File accession File format Output type Experiment accession Assay Biosample term id Biosample term name Biosample type Biosample organism Biosample treatments Biosample treatments amount Biosample treatments duration Experiment target Library made from Library depleted in Library extraction method Library lysis method Library crosslinking method Library strand specific Experiment date released Project RBNS protein concentration Library fragmentation method Library size range Biological replicate(s) Technical replicate Read length Mapped read length Run type Paired end Paired with Derived from Size Lab md5sum dbxrefs File download URL Assembly Platform Controlled by File Status Audit WARNING Audit INTERNAL_ACTION Audit NOT_COMPLIANT Audit ERROR ENCFF925UZZ fastq reads ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 1221762826 Xiang-Dong Fu, UCSD 3ebc60b8f49380a86bb095ae7689769a https://www.encodeproject.org/files/ENCFF925UZZ/@@download/ENCFF925UZZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF331RXU/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF539TVP fastq reads ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 1005475039 Xiang-Dong Fu, UCSD 4efe762399ef2414747faeefb52ac73f https://www.encodeproject.org/files/ENCFF539TVP/@@download/ENCFF539TVP.fastq.gz Illumina HiSeq 2000 /files/ENCFF318ZTK/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF281SDB bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF539TVP, ENCFF807MUK 700726692 ENCODE Processing Pipeline cebf5813192f489e6f1685848670f484 https://www.encodeproject.org/files/ENCFF281SDB/@@download/ENCFF281SDB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF667KBF bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF925UZZ 875727844 ENCODE Processing Pipeline df12c540236f6131ce71b5a7418f66f8 https://www.encodeproject.org/files/ENCFF667KBF/@@download/ENCFF667KBF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF928GGP bigWig signal p-value ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF350QUB, ENCFF667KBF 857056506 ENCODE Processing Pipeline 68fc93a2a5b86d246f5f8c133fdefcc1 https://www.encodeproject.org/files/ENCFF928GGP/@@download/ENCFF928GGP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF618QKD bigWig signal p-value ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF281SDB, ENCFF466QHR 754470286 ENCODE Processing Pipeline 92bf5d0f72077d546c2731bca8542192 https://www.encodeproject.org/files/ENCFF618QKD/@@download/ENCFF618QKD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF982OSU bigWig fold change over control ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF281SDB, ENCFF466QHR 509016998 ENCODE Processing Pipeline c970e9e4e5513cf8df7916d0fa9fc7d5 https://www.encodeproject.org/files/ENCFF982OSU/@@download/ENCFF982OSU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF751CTB bigWig fold change over control ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF350QUB, ENCFF667KBF 557738731 ENCODE Processing Pipeline ce40a9f399ad681ff4df4b7ee910c275 https://www.encodeproject.org/files/ENCFF751CTB/@@download/ENCFF751CTB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF929NEA bigWig signal p-value ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF281SDB, ENCFF350QUB, ENCFF466QHR, ENCFF667KBF 1426567941 ENCODE Processing Pipeline 566530554bafcb38bc32a0229713bddf https://www.encodeproject.org/files/ENCFF929NEA/@@download/ENCFF929NEA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF755KRH bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF350QUB, ENCFF667KBF 6487370 ENCODE Processing Pipeline a216a4a8a142f90b0aee3a2415f9346d https://www.encodeproject.org/files/ENCFF755KRH/@@download/ENCFF755KRH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF149RRS bigBed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF755KRH 13129060 ENCODE Processing Pipeline 1ab8ca56015a0be75431067f3912a92f https://www.encodeproject.org/files/ENCFF149RRS/@@download/ENCFF149RRS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF245CYX bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF281SDB, ENCFF350QUB, ENCFF466QHR, ENCFF667KBF 7138726 ENCODE Processing Pipeline 4a324123598ab014cc6c682fb87eb805 https://www.encodeproject.org/files/ENCFF245CYX/@@download/ENCFF245CYX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF285YMS bigBed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF245CYX 12895365 ENCODE Processing Pipeline 6ff8f19c8438fa4f28edadcbbc704a38 https://www.encodeproject.org/files/ENCFF285YMS/@@download/ENCFF285YMS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF753TWJ bigWig fold change over control ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF281SDB, ENCFF350QUB, ENCFF466QHR, ENCFF667KBF 1221850812 ENCODE Processing Pipeline 19665c7a1d44f9ceb2278169263ad27f https://www.encodeproject.org/files/ENCFF753TWJ/@@download/ENCFF753TWJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF720UBT bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF281SDB, ENCFF466QHR 6492687 ENCODE Processing Pipeline 8a2ad4ae6798b44d209bbe594a30b80e https://www.encodeproject.org/files/ENCFF720UBT/@@download/ENCFF720UBT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF726OAO bigBed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF720UBT 13012850 ENCODE Processing Pipeline 511238865d94da3974b86a1969402a1a https://www.encodeproject.org/files/ENCFF726OAO/@@download/ENCFF726OAO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF099SPM bam unfiltered alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF643CGH, ENCFF925UZZ 1679390477 ENCODE Processing Pipeline e16a119c516b1faaf6ec76d22954fd00 https://www.encodeproject.org/files/ENCFF099SPM/@@download/ENCFF099SPM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF250ASK bam unfiltered alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF539TVP, ENCFF643CGH 1376631830 ENCODE Processing Pipeline bb1a88d84fe7d5998e2ce518ee8631d4 https://www.encodeproject.org/files/ENCFF250ASK/@@download/ENCFF250ASK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF991WOD bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF539TVP, ENCFF643CGH 700345010 ENCODE Processing Pipeline d75129a57768089e947e34a4185b0dad https://www.encodeproject.org/files/ENCFF991WOD/@@download/ENCFF991WOD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF232PSU bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF925UZZ 875444682 ENCODE Processing Pipeline 31b910dbac1bdc8cd5b033f0a59d8fdb https://www.encodeproject.org/files/ENCFF232PSU/@@download/ENCFF232PSU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF365IOS bigWig signal p-value ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF232PSU, ENCFF388TPI 863668851 ENCODE Processing Pipeline 124b1b010a1022a48d607f23f789d12f https://www.encodeproject.org/files/ENCFF365IOS/@@download/ENCFF365IOS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF910TTX bigWig signal p-value ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF248LWZ, ENCFF991WOD 757786388 ENCODE Processing Pipeline 783fd3fdc13fb4e792419d9bae6af623 https://www.encodeproject.org/files/ENCFF910TTX/@@download/ENCFF910TTX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF252GWY bigWig signal p-value ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF232PSU, ENCFF248LWZ, ENCFF388TPI, ENCFF991WOD 1421789606 ENCODE Processing Pipeline 0b8e2e75dd387f2039ea9eb35d3e79cd https://www.encodeproject.org/files/ENCFF252GWY/@@download/ENCFF252GWY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF533FCA bigWig fold change over control ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF232PSU, ENCFF388TPI 578843739 ENCODE Processing Pipeline be41a266e7104185e3f267b517e7f0d4 https://www.encodeproject.org/files/ENCFF533FCA/@@download/ENCFF533FCA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF447MQY bigWig fold change over control ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF248LWZ, ENCFF991WOD 509580412 ENCODE Processing Pipeline 801f9614c90535802c7aa00de5805075 https://www.encodeproject.org/files/ENCFF447MQY/@@download/ENCFF447MQY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF095TJV bigWig fold change over control ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF232PSU, ENCFF248LWZ, ENCFF388TPI, ENCFF991WOD 1209677513 ENCODE Processing Pipeline 80affa65d574e76eaeeb7bd5c2a24d6b https://www.encodeproject.org/files/ENCFF095TJV/@@download/ENCFF095TJV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF733DNR bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF232PSU, ENCFF388TPI 6309446 ENCODE Processing Pipeline bfe95a5fd6a44e30259c30bf1a1e2ae4 https://www.encodeproject.org/files/ENCFF733DNR/@@download/ENCFF733DNR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF575CPG bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF248LWZ, ENCFF991WOD 6286499 ENCODE Processing Pipeline b669924210e53da60ca0118e08862bb6 https://www.encodeproject.org/files/ENCFF575CPG/@@download/ENCFF575CPG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF031WEU bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF232PSU, ENCFF248LWZ, ENCFF388TPI, ENCFF991WOD 7067476 ENCODE Processing Pipeline 615df54c78447d711949e079f51c4499 https://www.encodeproject.org/files/ENCFF031WEU/@@download/ENCFF031WEU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF260MMT bigBed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF733DNR 13099971 ENCODE Processing Pipeline 32f70474be63aaf9df43c84d7a4fef05 https://www.encodeproject.org/files/ENCFF260MMT/@@download/ENCFF260MMT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF765MLB bigBed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF575CPG 12982185 ENCODE Processing Pipeline 5a246f8d3466f831b3324cc2f1bc0029 https://www.encodeproject.org/files/ENCFF765MLB/@@download/ENCFF765MLB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF204OIP bed narrowPeak conservative idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF031WEU, ENCFF419RSJ, ENCFF575CPG, ENCFF733DNR 197854 ENCODE Processing Pipeline 288f44cb292bcc77bbed6f7a9c31bdef https://www.encodeproject.org/files/ENCFF204OIP/@@download/ENCFF204OIP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF083DAL bigBed narrowPeak conservative idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF204OIP 375755 ENCODE Processing Pipeline b89a53ce086bad3a032b479288f7cd07 https://www.encodeproject.org/files/ENCFF083DAL/@@download/ENCFF083DAL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF996YMS bigBed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF031WEU 12857981 ENCODE Processing Pipeline 15aebac81321e0f8e663a9da1254efbe https://www.encodeproject.org/files/ENCFF996YMS/@@download/ENCFF996YMS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF828QYP bigBed narrowPeak optimal idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF929TWP 412042 ENCODE Processing Pipeline 1e94e758099aecb3255ff0840eaa0e5e https://www.encodeproject.org/files/ENCFF828QYP/@@download/ENCFF828QYP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF929TWP bed narrowPeak optimal idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF031WEU, ENCFF419RSJ, ENCFF575CPG, ENCFF733DNR 224884 ENCODE Processing Pipeline b68998b0e9dddfba56900d32052315d1 https://www.encodeproject.org/files/ENCFF929TWP/@@download/ENCFF929TWP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF829CSZ bigBed narrowPeak conservative idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF920FBS 343914 ENCODE Processing Pipeline 3e343d6e9d2ed8f4907064ca6c0bd39d https://www.encodeproject.org/files/ENCFF829CSZ/@@download/ENCFF829CSZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF928QCD bigBed narrowPeak optimal idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF998KKJ 380216 ENCODE Processing Pipeline 619cf487fb40b081c014ec71944f445b https://www.encodeproject.org/files/ENCFF928QCD/@@download/ENCFF928QCD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF920FBS bed narrowPeak conservative idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF245CYX, ENCFF720UBT, ENCFF755KRH 175200 ENCODE Processing Pipeline efa64aa3f22770d536772f343addf362 https://www.encodeproject.org/files/ENCFF920FBS/@@download/ENCFF920FBS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF998KKJ bed narrowPeak optimal idr thresholded peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF245CYX, ENCFF720UBT, ENCFF755KRH 202079 ENCODE Processing Pipeline 7f68216ee11aceabaef58f989588a190 https://www.encodeproject.org/files/ENCFF998KKJ/@@download/ENCFF998KKJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF515TGR bam unfiltered alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF925UZZ 1671483610 ENCODE Processing Pipeline 603f580b0514fa47d2c28f7d32b96372 https://www.encodeproject.org/files/ENCFF515TGR/@@download/ENCFF515TGR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF169KFN bam unfiltered alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF539TVP, ENCFF807MUK 1370996487 ENCODE Processing Pipeline d8b9e2f542c3f089efec9b94076b37a6 https://www.encodeproject.org/files/ENCFF169KFN/@@download/ENCFF169KFN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF155PZO bam unfiltered alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPD, ENCFF002EGB, ENCFF807MUK 5825481798 ENCODE Processing Pipeline f5dcfd93bb67c17b7a4d3ad5e6a40ff5 https://www.encodeproject.org/files/ENCFF155PZO/@@download/ENCFF155PZO.bam hg19 released mild to moderate bottlenecking ENCFF347JRO bam unfiltered alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPB, ENCFF002DUE, ENCFF807MUK 5033503736 ENCODE Processing Pipeline fee1764dd1850d129a44a60810dfd0fe https://www.encodeproject.org/files/ENCFF347JRO/@@download/ENCFF347JRO.bam hg19 released mild to moderate bottlenecking ENCFF932YKV bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 1022623777 ENCODE Processing Pipeline 9b9484fd1a2cfef039f6e91228eb04d7 https://www.encodeproject.org/files/ENCFF932YKV/@@download/ENCFF932YKV.bigWig hg19 released mild to moderate bottlenecking ENCFF581WEG bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 986651360 ENCODE Processing Pipeline c81c686ee74df7cbf5147f8ebdb1f3bf https://www.encodeproject.org/files/ENCFF581WEG/@@download/ENCFF581WEG.bigWig hg19 released mild to moderate bottlenecking ENCFF436NWO bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 1249766523 ENCODE Processing Pipeline 24b80a133640c55e128b4ec0986e3c63 https://www.encodeproject.org/files/ENCFF436NWO/@@download/ENCFF436NWO.bigWig hg19 released mild to moderate bottlenecking ENCFF296BCS bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 1403772464 ENCODE Processing Pipeline 8f3e11d743546966f1e70cf7bbe0503d https://www.encodeproject.org/files/ENCFF296BCS/@@download/ENCFF296BCS.bigWig hg19 released mild to moderate bottlenecking ENCFF002DPB fastq reads ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002DUE 2535556722 Michael Snyder, Stanford 2d32499003243f4f1d4640252295c05e SRA:SRR5111677 https://www.encodeproject.org/files/ENCFF002DPB/@@download/ENCFF002DPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF002DPD fastq reads ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGB 2832898701 Michael Snyder, Stanford 3ea062eaccc7dd99e36ef3c38699d8a2 SRA:SRR5111676 https://www.encodeproject.org/files/ENCFF002DPD/@@download/ENCFF002DPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF002DUE fastq reads ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPB 2619130916 Michael Snyder, Stanford 97f8017d95026b3e924331791c468f2f SRA:SRR5111677 https://www.encodeproject.org/files/ENCFF002DUE/@@download/ENCFF002DUE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF002EGB fastq reads ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPD 2768716559 Michael Snyder, Stanford ff3a614ac05fb9c01842ebdcd19e1731 SRA:SRR5111676 https://www.encodeproject.org/files/ENCFF002EGB/@@download/ENCFF002EGB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF737XWF bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 1220192943 ENCODE Processing Pipeline 0be611e4566afc81be28aa96e801e400 https://www.encodeproject.org/files/ENCFF737XWF/@@download/ENCFF737XWF.bigWig hg19 released mild to moderate bottlenecking ENCFF622TBV bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 1989901723 ENCODE Processing Pipeline 0cc740b876180cd8601c6384019846f3 https://www.encodeproject.org/files/ENCFF622TBV/@@download/ENCFF622TBV.bigWig hg19 released mild to moderate bottlenecking ENCFF312EZM bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 6719059 ENCODE Processing Pipeline 71a739dae92c5ca03408ff454f3888de https://www.encodeproject.org/files/ENCFF312EZM/@@download/ENCFF312EZM.bed.gz hg19 released mild to moderate bottlenecking ENCFF477OCU bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 7173527 ENCODE Processing Pipeline 10fa05a4c4b4478b6214e169a15b4d44 https://www.encodeproject.org/files/ENCFF477OCU/@@download/ENCFF477OCU.bed.gz hg19 released mild to moderate bottlenecking ENCFF664XYL bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF312EZM 13206988 ENCODE Processing Pipeline 1908084775180e2884ba0128ae3afb13 https://www.encodeproject.org/files/ENCFF664XYL/@@download/ENCFF664XYL.bigBed hg19 released mild to moderate bottlenecking ENCFF940NRT bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7019893 ENCODE Processing Pipeline 5936d3a4c380f4b13628191fba4e233b https://www.encodeproject.org/files/ENCFF940NRT/@@download/ENCFF940NRT.bed.gz hg19 released mild to moderate bottlenecking ENCFF491ILO bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF940NRT 13206565 ENCODE Processing Pipeline aca08d946ef27207c24654f3ca260a44 https://www.encodeproject.org/files/ENCFF491ILO/@@download/ENCFF491ILO.bigBed hg19 released mild to moderate bottlenecking ENCFF660MUZ bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF477OCU 13081550 ENCODE Processing Pipeline 6e8f7b136d27e1d0339b3efbd658ed0c https://www.encodeproject.org/files/ENCFF660MUZ/@@download/ENCFF660MUZ.bigBed hg19 released mild to moderate bottlenecking ENCFF450JCL bed narrowPeak conservative idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF312EZM, ENCFF477OCU, ENCFF940NRT 513204 ENCODE Processing Pipeline 273720f6f51bb9e0fac260fe814a05a1 https://www.encodeproject.org/files/ENCFF450JCL/@@download/ENCFF450JCL.bed.gz hg19 released mild to moderate bottlenecking ENCFF824PFM bigBed narrowPeak conservative idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF450JCL 978452 ENCODE Processing Pipeline 983a20cc330f38c26c58986c93a72a3f https://www.encodeproject.org/files/ENCFF824PFM/@@download/ENCFF824PFM.bigBed hg19 released mild to moderate bottlenecking ENCFF992QZV bed narrowPeak optimal idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF312EZM, ENCFF477OCU, ENCFF940NRT 622007 ENCODE Processing Pipeline abd4e1b435d690187f35c0bf71fe5cdb https://www.encodeproject.org/files/ENCFF992QZV/@@download/ENCFF992QZV.bed.gz hg19 released mild to moderate bottlenecking ENCFF043XYY bigBed narrowPeak optimal idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF992QZV 1143721 ENCODE Processing Pipeline 99f150ee7c04ec64e96f2c03805e47af https://www.encodeproject.org/files/ENCFF043XYY/@@download/ENCFF043XYY.bigBed hg19 released mild to moderate bottlenecking ENCFF724MBT bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPD, ENCFF002EGB, ENCFF807MUK 5029153075 ENCODE Processing Pipeline 0244313f5904123cbd50caae31b05d45 https://www.encodeproject.org/files/ENCFF724MBT/@@download/ENCFF724MBT.bam hg19 released mild to moderate bottlenecking ENCFF882JOI bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPB, ENCFF002DUE, ENCFF807MUK 3976683577 ENCODE Processing Pipeline 34813cfb66968d9a8c9f792dd834f542 https://www.encodeproject.org/files/ENCFF882JOI/@@download/ENCFF882JOI.bam hg19 released mild to moderate bottlenecking ENCFF707YQP bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 1024925515 ENCODE Processing Pipeline a58115d16de1d4a50ab190cb49776e99 https://www.encodeproject.org/files/ENCFF707YQP/@@download/ENCFF707YQP.bigWig hg19 archived mild to moderate bottlenecking ENCFF136LMD bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 1256912391 ENCODE Processing Pipeline db92750d903ba7ee39039e13d242dff4 https://www.encodeproject.org/files/ENCFF136LMD/@@download/ENCFF136LMD.bigWig hg19 archived mild to moderate bottlenecking ENCFF290QSM bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 1406470435 ENCODE Processing Pipeline 680a1b7eee614d6d7d5039b1e5ac570c https://www.encodeproject.org/files/ENCFF290QSM/@@download/ENCFF290QSM.bigWig hg19 archived mild to moderate bottlenecking ENCFF055UKP bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 993161669 ENCODE Processing Pipeline d6b64d5a520072e2cf46472b02ff5536 https://www.encodeproject.org/files/ENCFF055UKP/@@download/ENCFF055UKP.bigWig hg19 archived mild to moderate bottlenecking ENCFF221LXN bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 1222554789 ENCODE Processing Pipeline 7ade69126dfd23d1c80f6a92ee1509d0 https://www.encodeproject.org/files/ENCFF221LXN/@@download/ENCFF221LXN.bigWig hg19 archived mild to moderate bottlenecking ENCFF794VUJ bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 6789866 ENCODE Processing Pipeline 235c938786e379e416bcee3bb756c555 https://www.encodeproject.org/files/ENCFF794VUJ/@@download/ENCFF794VUJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF731JDO bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7095383 ENCODE Processing Pipeline c35cf7cbae9e72bc00e9688c8705e0b5 https://www.encodeproject.org/files/ENCFF731JDO/@@download/ENCFF731JDO.bed.gz hg19 archived mild to moderate bottlenecking ENCFF720BUE bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 1990596655 ENCODE Processing Pipeline 0c1f3a48c44255d8380cec8e85275451 https://www.encodeproject.org/files/ENCFF720BUE/@@download/ENCFF720BUE.bigWig hg19 archived mild to moderate bottlenecking ENCFF116JUN bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 7182225 ENCODE Processing Pipeline 26d260ae9ace801d7f8f70505b4ac162 https://www.encodeproject.org/files/ENCFF116JUN/@@download/ENCFF116JUN.bed.gz hg19 archived mild to moderate bottlenecking ENCFF520CLE bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF794VUJ 13215499 ENCODE Processing Pipeline 59744a00f66ae5a955e23124d86959be https://www.encodeproject.org/files/ENCFF520CLE/@@download/ENCFF520CLE.bigBed hg19 archived mild to moderate bottlenecking ENCFF778HDU bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF116JUN 13082296 ENCODE Processing Pipeline 8992b649b80a00c54d4c040330bbae65 https://www.encodeproject.org/files/ENCFF778HDU/@@download/ENCFF778HDU.bigBed hg19 archived mild to moderate bottlenecking ENCFF804PKF bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF731JDO 13216244 ENCODE Processing Pipeline 4b93039fc7cb713279e0eb65ac531fa8 https://www.encodeproject.org/files/ENCFF804PKF/@@download/ENCFF804PKF.bigBed hg19 archived mild to moderate bottlenecking ENCFF626MZK bam unfiltered alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPB, ENCFF002DUE, ENCFF643CGH 5034170891 ENCODE Processing Pipeline 3b6f9e6f7a8e91c3214755e3fed87ae0 https://www.encodeproject.org/files/ENCFF626MZK/@@download/ENCFF626MZK.bam GRCh38 released mild to moderate bottlenecking ENCFF763PNZ bam unfiltered alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPD, ENCFF002EGB, ENCFF643CGH 5831358024 ENCODE Processing Pipeline 3c652b6a9c15742296aa23332a47d703 https://www.encodeproject.org/files/ENCFF763PNZ/@@download/ENCFF763PNZ.bam GRCh38 released mild to moderate bottlenecking ENCFF337GMY bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPB, ENCFF002DUE, ENCFF643CGH 3978117933 ENCODE Processing Pipeline a6537270b82b3d47c526e9e4c3f846ad https://www.encodeproject.org/files/ENCFF337GMY/@@download/ENCFF337GMY.bam GRCh38 released mild to moderate bottlenecking ENCFF821HMU bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPD, ENCFF002EGB, ENCFF643CGH 5031741844 ENCODE Processing Pipeline 1ec56176feffb806d192d3cb4cdb0385 https://www.encodeproject.org/files/ENCFF821HMU/@@download/ENCFF821HMU.bam GRCh38 released mild to moderate bottlenecking ENCFF944FUT bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF337GMY, ENCFF910IKB 975206621 ENCODE Processing Pipeline 28ccf8da360a8111fe5d6e31e6b33111 https://www.encodeproject.org/files/ENCFF944FUT/@@download/ENCFF944FUT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF593PIB bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF821HMU 1177490388 ENCODE Processing Pipeline c9e65ee790778a4a1c6407a1c514014d https://www.encodeproject.org/files/ENCFF593PIB/@@download/ENCFF593PIB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF541DNK bigWig signal p-value ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF337GMY, ENCFF821HMU, ENCFF910IKB 1432544317 ENCODE Processing Pipeline 631b6fee506610e4b7d543da160fa96c https://www.encodeproject.org/files/ENCFF541DNK/@@download/ENCFF541DNK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF177ESL bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF337GMY, ENCFF910IKB 989545833 ENCODE Processing Pipeline 699f0f387ee7ee4c0e1c67fd844ef150 https://www.encodeproject.org/files/ENCFF177ESL/@@download/ENCFF177ESL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF009YZC bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF821HMU 1222635336 ENCODE Processing Pipeline 942fb0b218c2adc645bb3cb03d210f52 https://www.encodeproject.org/files/ENCFF009YZC/@@download/ENCFF009YZC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF458LDQ bigWig fold change over control ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF337GMY, ENCFF821HMU, ENCFF910IKB 1984280745 ENCODE Processing Pipeline bd8b3ca7d47df5be44378d68ca3390d5 https://www.encodeproject.org/files/ENCFF458LDQ/@@download/ENCFF458LDQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF203LQZ bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF337GMY, ENCFF910IKB 6694355 ENCODE Processing Pipeline 6c59a8dd3c781dd837f77a4acaf8de66 https://www.encodeproject.org/files/ENCFF203LQZ/@@download/ENCFF203LQZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF108OPZ bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF821HMU 6987127 ENCODE Processing Pipeline 311ca73985eaf262135fa6bfdacbc782 https://www.encodeproject.org/files/ENCFF108OPZ/@@download/ENCFF108OPZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF535XLA bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF337GMY, ENCFF821HMU, ENCFF910IKB 7170867 ENCODE Processing Pipeline c39a1d202f0d89978725ae91400bb3e4 https://www.encodeproject.org/files/ENCFF535XLA/@@download/ENCFF535XLA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF810QQX bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF203LQZ 13206328 ENCODE Processing Pipeline 0c6bd9d57739344b439997932e1675f5 https://www.encodeproject.org/files/ENCFF810QQX/@@download/ENCFF810QQX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF482WBE bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF108OPZ 13192888 ENCODE Processing Pipeline a8caefdb71ce4b33b72bf62ed0f5b3bc https://www.encodeproject.org/files/ENCFF482WBE/@@download/ENCFF482WBE.bigBed GRCh38 released mild to moderate bottlenecking ENCFF333DCJ bigBed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF535XLA 13096342 ENCODE Processing Pipeline ec4b4410eaa90f9635fe79936b98e497 https://www.encodeproject.org/files/ENCFF333DCJ/@@download/ENCFF333DCJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF460GYT bed narrowPeak conservative idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF108OPZ, ENCFF203LQZ, ENCFF419RSJ, ENCFF535XLA 517105 ENCODE Processing Pipeline 226e8cfa8460f75225beeffe80341297 https://www.encodeproject.org/files/ENCFF460GYT/@@download/ENCFF460GYT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF650YRD bigBed narrowPeak conservative idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF460GYT 987767 ENCODE Processing Pipeline 1ffad225c545bc1367600d49701d7f15 https://www.encodeproject.org/files/ENCFF650YRD/@@download/ENCFF650YRD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF905EQT bigBed narrowPeak optimal idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF543STN 1142367 ENCODE Processing Pipeline ca1a5cecd1ca1d52f0c16d532d546425 https://www.encodeproject.org/files/ENCFF905EQT/@@download/ENCFF905EQT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF543STN bed narrowPeak optimal idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF108OPZ, ENCFF203LQZ, ENCFF419RSJ, ENCFF535XLA 617859 ENCODE Processing Pipeline a0c264cf57e6f232c64edeacf60a911a https://www.encodeproject.org/files/ENCFF543STN/@@download/ENCFF543STN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF431NKM bed narrowPeak conservative idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF116JUN, ENCFF731JDO, ENCFF794VUJ 453909 ENCODE Processing Pipeline 722ddcaa9d45655ee854d37daf3626ec https://www.encodeproject.org/files/ENCFF431NKM/@@download/ENCFF431NKM.bed.gz hg19 archived mild to moderate bottlenecking ENCFF142EOG bigBed narrowPeak conservative idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF431NKM 910960 ENCODE Processing Pipeline 1d481f31c66c4d50d7d7be3cb6246c81 https://www.encodeproject.org/files/ENCFF142EOG/@@download/ENCFF142EOG.bigBed hg19 archived mild to moderate bottlenecking ENCFF511MLB bigBed narrowPeak optimal idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF638YFC 1050672 ENCODE Processing Pipeline 51744712cc87cda4892ad63a015545b1 https://www.encodeproject.org/files/ENCFF511MLB/@@download/ENCFF511MLB.bigBed hg19 archived mild to moderate bottlenecking ENCFF638YFC bed narrowPeak optimal idr thresholded peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF116JUN, ENCFF731JDO, ENCFF794VUJ 549409 ENCODE Processing Pipeline 251eed7221822cb7a11fd6e446f1ffc8 https://www.encodeproject.org/files/ENCFF638YFC/@@download/ENCFF638YFC.bed.gz hg19 archived mild to moderate bottlenecking ENCFF679POI fastq reads ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1968224759 Richard Myers, HAIB da619ed7a765e419ef88c966679b6ed8 SRA:SRR5339631 https://www.encodeproject.org/files/ENCFF679POI/@@download/ENCFF679POI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695OMH fastq reads ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1260334589 Richard Myers, HAIB f3756bd78dfb9608ecd040c3ee42390a SRA:SRR5339632 https://www.encodeproject.org/files/ENCFF695OMH/@@download/ENCFF695OMH.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF319QGL bam unfiltered alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF695OMH 1465295380 ENCODE Processing Pipeline 03076994aaedc4092b443fa9cfd820a9 https://www.encodeproject.org/files/ENCFF319QGL/@@download/ENCFF319QGL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF883KKU bam unfiltered alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF679POI 2245197483 ENCODE Processing Pipeline ef7380f749909bb7a9d1d96f87a96b47 https://www.encodeproject.org/files/ENCFF883KKU/@@download/ENCFF883KKU.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF942OZW bam unfiltered alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF679POI, ENCFF807MUK 2240960744 ENCODE Processing Pipeline 17ff1cdecb33d244d8d1f364c59aefb3 https://www.encodeproject.org/files/ENCFF942OZW/@@download/ENCFF942OZW.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF791PQR bam unfiltered alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF695OMH, ENCFF807MUK 1462890601 ENCODE Processing Pipeline 8716bf841b3a82e5e19c08b7985ab19b https://www.encodeproject.org/files/ENCFF791PQR/@@download/ENCFF791PQR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF417XBC bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF695OMH, ENCFF807MUK 1121702001 ENCODE Processing Pipeline afde1dd84bdf224df11c6c3ffee34005 https://www.encodeproject.org/files/ENCFF417XBC/@@download/ENCFF417XBC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF705PYY bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF695OMH 1122028182 ENCODE Processing Pipeline 10e662ffe2618d88b4902ec4b1c5ee5b https://www.encodeproject.org/files/ENCFF705PYY/@@download/ENCFF705PYY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469ZEQ bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF679POI 1682109846 ENCODE Processing Pipeline 5bb486f87582f518c7e1733baac4c455 https://www.encodeproject.org/files/ENCFF469ZEQ/@@download/ENCFF469ZEQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970GQA bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF679POI, ENCFF807MUK 1681515612 ENCODE Processing Pipeline 4a6930001b3514c4f63e1d617cde69ca https://www.encodeproject.org/files/ENCFF970GQA/@@download/ENCFF970GQA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF025KIM bigWig signal p-value ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF705PYY 521905348 ENCODE Processing Pipeline e1e0f4b9e72d8501789473209b176fd9 https://www.encodeproject.org/files/ENCFF025KIM/@@download/ENCFF025KIM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF486JQK bigWig signal p-value ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF469ZEQ 632555774 ENCODE Processing Pipeline 660466ab6333f2492bbd47cfb416a29b https://www.encodeproject.org/files/ENCFF486JQK/@@download/ENCFF486JQK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF069DUV bigWig signal p-value ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF469ZEQ, ENCFF705PYY 655272705 ENCODE Processing Pipeline a0641d9dd4d177ca91924c01089a498f https://www.encodeproject.org/files/ENCFF069DUV/@@download/ENCFF069DUV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF355XGV bigWig fold change over control ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF469ZEQ 611704550 ENCODE Processing Pipeline fdaf82ebc18b0c3f04182c8377c5cfcc https://www.encodeproject.org/files/ENCFF355XGV/@@download/ENCFF355XGV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF036CCE bigWig fold change over control ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF705PYY 454528046 ENCODE Processing Pipeline ba4e0f5a752dd04c8aa715d20ae77d5a https://www.encodeproject.org/files/ENCFF036CCE/@@download/ENCFF036CCE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF656USH bigWig fold change over control ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF469ZEQ, ENCFF705PYY 862870737 ENCODE Processing Pipeline 38aedfb9c148cbe50800678706b6acd1 https://www.encodeproject.org/files/ENCFF656USH/@@download/ENCFF656USH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF403DJY bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF469ZEQ 6709201 ENCODE Processing Pipeline 2f9b21b71001585a90c5b3d72e50dcf8 https://www.encodeproject.org/files/ENCFF403DJY/@@download/ENCFF403DJY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF606SUB bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF705PYY 6431489 ENCODE Processing Pipeline a05c09efec04e966066148a63adf229d https://www.encodeproject.org/files/ENCFF606SUB/@@download/ENCFF606SUB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF216KWF bigBed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF403DJY 12794411 ENCODE Processing Pipeline 77bd754fd632b05dad926a5f118d609b https://www.encodeproject.org/files/ENCFF216KWF/@@download/ENCFF216KWF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF078YZS bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF469ZEQ, ENCFF705PYY 6986349 ENCODE Processing Pipeline dc85907f949c8b72550d380b6d0e52a8 https://www.encodeproject.org/files/ENCFF078YZS/@@download/ENCFF078YZS.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF527IMX bigBed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF606SUB 12875240 ENCODE Processing Pipeline 34b8b83b52661c5c7f629e47a957d46b https://www.encodeproject.org/files/ENCFF527IMX/@@download/ENCFF527IMX.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF876YRS bigBed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF078YZS 12729742 ENCODE Processing Pipeline 62b991fec59014ea669ee2443e555ffb https://www.encodeproject.org/files/ENCFF876YRS/@@download/ENCFF876YRS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF862MKQ bed narrowPeak conservative idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF078YZS, ENCFF403DJY, ENCFF419RSJ, ENCFF606SUB 600678 ENCODE Processing Pipeline ea65262bcfa4facf1ac2466ab085a6dd https://www.encodeproject.org/files/ENCFF862MKQ/@@download/ENCFF862MKQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF235HCL bigBed narrowPeak conservative idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF862MKQ 1104276 ENCODE Processing Pipeline c430db6caafaa10e3202cd8e8dce6c4f https://www.encodeproject.org/files/ENCFF235HCL/@@download/ENCFF235HCL.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF197YSM bed narrowPeak optimal idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF078YZS, ENCFF403DJY, ENCFF419RSJ, ENCFF606SUB 621967 ENCODE Processing Pipeline a95aa10071b351ed0a0d5557a46372fa https://www.encodeproject.org/files/ENCFF197YSM/@@download/ENCFF197YSM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875EWZ bigBed narrowPeak optimal idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF197YSM 1135695 ENCODE Processing Pipeline 08c83db2e5a0623b432e9f46de11220d https://www.encodeproject.org/files/ENCFF875EWZ/@@download/ENCFF875EWZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF481KEP bigWig signal p-value ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970GQA 1351608576 ENCODE Processing Pipeline 0c3632bbb5bce5d50a45268b4acb938b https://www.encodeproject.org/files/ENCFF481KEP/@@download/ENCFF481KEP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF607PUF bigWig signal p-value ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF417XBC 1279538875 ENCODE Processing Pipeline 4b0e8116b1e064733c36cc826550af4e https://www.encodeproject.org/files/ENCFF607PUF/@@download/ENCFF607PUF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF153OOU bigWig fold change over control ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970GQA 1133517661 ENCODE Processing Pipeline a4373ff61e34524bb889135b8088c983 https://www.encodeproject.org/files/ENCFF153OOU/@@download/ENCFF153OOU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF844LVJ bigWig signal p-value ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF417XBC, ENCFF970GQA 1423428986 ENCODE Processing Pipeline 41a7cba466ca94d8959bf19cacb2c076 https://www.encodeproject.org/files/ENCFF844LVJ/@@download/ENCFF844LVJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF748URG bigWig fold change over control ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF417XBC 878876842 ENCODE Processing Pipeline 6ac9e15fb2cb33a420d6856dbfa8751a https://www.encodeproject.org/files/ENCFF748URG/@@download/ENCFF748URG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF423MHO bigWig fold change over control ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF417XBC, ENCFF970GQA 1503015039 ENCODE Processing Pipeline e8c8af262d2670fd50b7649b197c1da1 https://www.encodeproject.org/files/ENCFF423MHO/@@download/ENCFF423MHO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF633NDL bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970GQA 6994768 ENCODE Processing Pipeline 2031eefbc0bb88d75c2dc831948b219a https://www.encodeproject.org/files/ENCFF633NDL/@@download/ENCFF633NDL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF270JUJ bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF417XBC 6818984 ENCODE Processing Pipeline 3b84347ef6235c67c6f755c8595d890c https://www.encodeproject.org/files/ENCFF270JUJ/@@download/ENCFF270JUJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF636XFC bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF417XBC, ENCFF970GQA 7093294 ENCODE Processing Pipeline 1f676afab5af12aec215f43ce1d6cf31 https://www.encodeproject.org/files/ENCFF636XFC/@@download/ENCFF636XFC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF141STE bigBed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF270JUJ 12741238 ENCODE Processing Pipeline e5972c5a85867419b7f3841dc003238e https://www.encodeproject.org/files/ENCFF141STE/@@download/ENCFF141STE.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF242MZA bigBed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF633NDL 12749150 ENCODE Processing Pipeline 3f4878378953561a4e7197a414045406 https://www.encodeproject.org/files/ENCFF242MZA/@@download/ENCFF242MZA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF054JNI bed narrowPeak conservative idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF270JUJ, ENCFF633NDL, ENCFF636XFC 610568 ENCODE Processing Pipeline 8fb8ddb481cd5db196beac39cfabaead https://www.encodeproject.org/files/ENCFF054JNI/@@download/ENCFF054JNI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF780SVO bigBed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF636XFC 12709160 ENCODE Processing Pipeline 7ec3accbbe0d9ddb033edee479eac541 https://www.encodeproject.org/files/ENCFF780SVO/@@download/ENCFF780SVO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF456KPI bigBed narrowPeak conservative idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF054JNI 1139369 ENCODE Processing Pipeline 7af886cebbe6c6af8ea85e00c551622f https://www.encodeproject.org/files/ENCFF456KPI/@@download/ENCFF456KPI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795SAO bed narrowPeak optimal idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF270JUJ, ENCFF633NDL, ENCFF636XFC 627113 ENCODE Processing Pipeline 2b35628d81e8c08f99d885f9ae251cc7 https://www.encodeproject.org/files/ENCFF795SAO/@@download/ENCFF795SAO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782PPD bigBed narrowPeak optimal idr thresholded peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF795SAO 1163449 ENCODE Processing Pipeline 49060d9eb57f7101d6eecb164045dc16 https://www.encodeproject.org/files/ENCFF782PPD/@@download/ENCFF782PPD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894OFW bam unfiltered alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF856FXU, ENCFF947GWY 1244555494 ENCODE Processing Pipeline a1d698a1bcd72d68e76da96004cb6add https://www.encodeproject.org/files/ENCFF894OFW/@@download/ENCFF894OFW.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF388PNJ bam unfiltered alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 50 ENCFF159GUZ, ENCFF771AEO, ENCFF807MUK 1060410771 ENCODE Processing Pipeline b87aa3cf2849492d1e5b556769882484 https://www.encodeproject.org/files/ENCFF388PNJ/@@download/ENCFF388PNJ.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF159GUZ fastq reads ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 499826897 Kevin White, UChicago 9278b3095bc21415dda6e1373c21062c SRA:SRR6212841 https://www.encodeproject.org/files/ENCFF159GUZ/@@download/ENCFF159GUZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF212LBE/, /files/ENCFF861SAD/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF856FXU fastq reads ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 589483835 Kevin White, UChicago c6f9f13abc353036e10dbf3871098667 SRA:SRR6212839 https://www.encodeproject.org/files/ENCFF856FXU/@@download/ENCFF856FXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF212LBE/, /files/ENCFF861SAD/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF771AEO fastq reads ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 486859969 Kevin White, UChicago 83e42d49fc36afa5f465725ecc809c94 SRA:SRR6212842 https://www.encodeproject.org/files/ENCFF771AEO/@@download/ENCFF771AEO.fastq.gz Illumina HiSeq 2500 /files/ENCFF212LBE/, /files/ENCFF861SAD/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF947GWY fastq reads ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 636438794 Kevin White, UChicago 3d6ff2c8f5850b706c802e9d47579adb SRA:SRR6212840 https://www.encodeproject.org/files/ENCFF947GWY/@@download/ENCFF947GWY.fastq.gz Illumina HiSeq 2500 /files/ENCFF212LBE/, /files/ENCFF861SAD/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF749SPN bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF856FXU, ENCFF947GWY 804252816 ENCODE Processing Pipeline 41c70bda1536739111f62225c9900724 https://www.encodeproject.org/files/ENCFF749SPN/@@download/ENCFF749SPN.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF151KAU bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 50 ENCFF159GUZ, ENCFF771AEO, ENCFF807MUK 791866884 ENCODE Processing Pipeline d22030050e9c50091d2002e0ca1018a0 https://www.encodeproject.org/files/ENCFF151KAU/@@download/ENCFF151KAU.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF749OPL bigWig signal p-value ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF122RZR, ENCFF151KAU 437654511 ENCODE Processing Pipeline 4582cd5241cb316bedd6925c2c125b79 https://www.encodeproject.org/files/ENCFF749OPL/@@download/ENCFF749OPL.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF736DHY bigWig signal p-value ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF122RZR, ENCFF749SPN 437505417 ENCODE Processing Pipeline 31a8349806f500fd37a041ddd0003e5b https://www.encodeproject.org/files/ENCFF736DHY/@@download/ENCFF736DHY.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF355QZP bigWig signal p-value ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF122RZR, ENCFF151KAU, ENCFF749SPN 608425171 ENCODE Processing Pipeline 7b09592df396cf71e3bf377aa327be5b https://www.encodeproject.org/files/ENCFF355QZP/@@download/ENCFF355QZP.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF082AJK bigWig fold change over control ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF122RZR, ENCFF151KAU 409046623 ENCODE Processing Pipeline c2715b1e5d757560bbbfb0f8d1aa15c6 https://www.encodeproject.org/files/ENCFF082AJK/@@download/ENCFF082AJK.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF819OJE bigWig fold change over control ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF122RZR, ENCFF151KAU, ENCFF749SPN 698819592 ENCODE Processing Pipeline 51694d1ed87581ca4192830601c66b06 https://www.encodeproject.org/files/ENCFF819OJE/@@download/ENCFF819OJE.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF568DPR bigWig fold change over control ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF122RZR, ENCFF749SPN 454804452 ENCODE Processing Pipeline 63e6dd2ce9630b92bbfedb6b7c05c342 https://www.encodeproject.org/files/ENCFF568DPR/@@download/ENCFF568DPR.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF496DRF bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF122RZR, ENCFF749SPN 6600546 ENCODE Processing Pipeline e10b945072947412a4967a04e7cda307 https://www.encodeproject.org/files/ENCFF496DRF/@@download/ENCFF496DRF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF586UNH bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF122RZR, ENCFF151KAU, ENCFF749SPN 7054018 ENCODE Processing Pipeline 9aa1c3c23f60d389f728bb3134d3104c https://www.encodeproject.org/files/ENCFF586UNH/@@download/ENCFF586UNH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF870WRO bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF122RZR, ENCFF151KAU 6411041 ENCODE Processing Pipeline 7468371d858620d613dcb242d0996952 https://www.encodeproject.org/files/ENCFF870WRO/@@download/ENCFF870WRO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF982KCZ bigBed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF870WRO 12876478 ENCODE Processing Pipeline 25fedd76cd7db40904d85645ca0f940e https://www.encodeproject.org/files/ENCFF982KCZ/@@download/ENCFF982KCZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF192KRK bigBed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF496DRF 12683237 ENCODE Processing Pipeline ef0945c2d0bc540fa2191a2ae7903cec https://www.encodeproject.org/files/ENCFF192KRK/@@download/ENCFF192KRK.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF936FWG bigBed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF586UNH 12776229 ENCODE Processing Pipeline afcb94c9de85427edf6ac9b62f1b42f6 https://www.encodeproject.org/files/ENCFF936FWG/@@download/ENCFF936FWG.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF389BNK bam unfiltered alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF856FXU, ENCFF947GWY 1248192445 ENCODE Processing Pipeline 45ed83695862de4b38184cfe15fc180c https://www.encodeproject.org/files/ENCFF389BNK/@@download/ENCFF389BNK.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF130LPZ bam unfiltered alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 50 ENCFF159GUZ, ENCFF643CGH, ENCFF771AEO 1063779857 ENCODE Processing Pipeline 1e8ecdfd6b311d62095484e7b3144486 https://www.encodeproject.org/files/ENCFF130LPZ/@@download/ENCFF130LPZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF057CNY bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 50 ENCFF159GUZ, ENCFF643CGH, ENCFF771AEO 791325096 ENCODE Processing Pipeline ba4d6e065931aba1f857dffbc6f58ddb https://www.encodeproject.org/files/ENCFF057CNY/@@download/ENCFF057CNY.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF216TEN bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF856FXU, ENCFF947GWY 803771068 ENCODE Processing Pipeline 6c2431435307a02b5d5d77d649829866 https://www.encodeproject.org/files/ENCFF216TEN/@@download/ENCFF216TEN.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF986ATH bigWig signal p-value ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF057CNY, ENCFF216TEN, ENCFF299GMC 602529147 ENCODE Processing Pipeline 637df3251ed4150b42f185e9f274825a https://www.encodeproject.org/files/ENCFF986ATH/@@download/ENCFF986ATH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF677KBX bigWig signal p-value ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF057CNY, ENCFF299GMC 451029545 ENCODE Processing Pipeline 27204d625c74b4098260a8a7c1e65931 https://www.encodeproject.org/files/ENCFF677KBX/@@download/ENCFF677KBX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF727RFJ bigWig signal p-value ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF216TEN, ENCFF299GMC 497142669 ENCODE Processing Pipeline 933d75897ad5d27e364c13cccb0bba32 https://www.encodeproject.org/files/ENCFF727RFJ/@@download/ENCFF727RFJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF579NFE bigWig fold change over control ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF216TEN, ENCFF299GMC 465758527 ENCODE Processing Pipeline 409bec0e4f066a747a2b9d6d00f90cb7 https://www.encodeproject.org/files/ENCFF579NFE/@@download/ENCFF579NFE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF088VYJ bigWig fold change over control ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF057CNY, ENCFF299GMC 419852907 ENCODE Processing Pipeline 47e7f85bbd02b473c734fb36535ee8ac https://www.encodeproject.org/files/ENCFF088VYJ/@@download/ENCFF088VYJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF262GOA bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF057CNY, ENCFF216TEN, ENCFF299GMC 6928691 ENCODE Processing Pipeline 882ca87ae01575f85d685afdf35e6a56 https://www.encodeproject.org/files/ENCFF262GOA/@@download/ENCFF262GOA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF057THX bigWig fold change over control ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF057CNY, ENCFF216TEN, ENCFF299GMC 691623450 ENCODE Processing Pipeline 48a4f3b117f50ee0494618326f01c19a https://www.encodeproject.org/files/ENCFF057THX/@@download/ENCFF057THX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF259KSQ bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF057CNY, ENCFF299GMC 6209799 ENCODE Processing Pipeline d607734184b9949a6bb9a0fe2fc6af5a https://www.encodeproject.org/files/ENCFF259KSQ/@@download/ENCFF259KSQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF560KXO bigBed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF259KSQ 12894279 ENCODE Processing Pipeline 63a88dd63ef5eecab7ce28f2ac1e3a87 https://www.encodeproject.org/files/ENCFF560KXO/@@download/ENCFF560KXO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF010PGN bigBed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF262GOA 12788211 ENCODE Processing Pipeline e6dba50395e6959367442e0d9def1284 https://www.encodeproject.org/files/ENCFF010PGN/@@download/ENCFF010PGN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF546FHG bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF216TEN, ENCFF299GMC 6457109 ENCODE Processing Pipeline 393ce6395ed413092a919bd580df2309 https://www.encodeproject.org/files/ENCFF546FHG/@@download/ENCFF546FHG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF939MRU bigBed narrowPeak optimal idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF544HIJ 639923 ENCODE Processing Pipeline 7f27a2fd47b2f7ce225ce0b5e0b4271e https://www.encodeproject.org/files/ENCFF939MRU/@@download/ENCFF939MRU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF867LYH bigBed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF546FHG 12677347 ENCODE Processing Pipeline 9b51f8f1552dc7cb44c345042cc13739 https://www.encodeproject.org/files/ENCFF867LYH/@@download/ENCFF867LYH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF757ULW bed narrowPeak conservative idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF259KSQ, ENCFF262GOA, ENCFF419RSJ, ENCFF546FHG 270644 ENCODE Processing Pipeline 3dd73563254d747956a32a24202c15a9 https://www.encodeproject.org/files/ENCFF757ULW/@@download/ENCFF757ULW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF564DHT bigBed narrowPeak conservative idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF757ULW 735514 ENCODE Processing Pipeline 6b5905757c46660fd9f185e51188053e https://www.encodeproject.org/files/ENCFF564DHT/@@download/ENCFF564DHT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF544HIJ bed narrowPeak optimal idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF259KSQ, ENCFF262GOA, ENCFF419RSJ, ENCFF546FHG 275769 ENCODE Processing Pipeline a03a4b47186bd0794eef7366c45cf94e https://www.encodeproject.org/files/ENCFF544HIJ/@@download/ENCFF544HIJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF498DWU bed narrowPeak conservative idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF496DRF, ENCFF586UNH, ENCFF870WRO 220043 ENCODE Processing Pipeline 597a43b6282361a313cf2dac044aed32 https://www.encodeproject.org/files/ENCFF498DWU/@@download/ENCFF498DWU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF815TTY bed narrowPeak optimal idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF496DRF, ENCFF586UNH, ENCFF870WRO 231991 ENCODE Processing Pipeline 8eb29d69d43dda0167d9a6380166fde5 https://www.encodeproject.org/files/ENCFF815TTY/@@download/ENCFF815TTY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF627KHW bigBed narrowPeak optimal idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF815TTY 478770 ENCODE Processing Pipeline 4369147fc8b7c23010ce651a93031886 https://www.encodeproject.org/files/ENCFF627KHW/@@download/ENCFF627KHW.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF592KWA bigBed narrowPeak conservative idr thresholded peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF498DWU 462154 ENCODE Processing Pipeline 1ced3178ea7308bed552dc6a7e8e3f78 https://www.encodeproject.org/files/ENCFF592KWA/@@download/ENCFF592KWA.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF103CMT bam unfiltered alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF663NBI, ENCFF667DGY, ENCFF807MUK 5385542966 ENCODE Processing Pipeline 081a7e02ad329e1605f7a80e38b8ec61 https://www.encodeproject.org/files/ENCFF103CMT/@@download/ENCFF103CMT.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF969SFM bam unfiltered alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF165NMW, ENCFF411TJB, ENCFF807MUK 4824020395 ENCODE Processing Pipeline ff9b75efa3f915f6cb5a1dd6c5f28c6f https://www.encodeproject.org/files/ENCFF969SFM/@@download/ENCFF969SFM.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF411TJB fastq reads ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF165NMW 2254923623 Michael Snyder, Stanford f15814cddc5049ec36dc1ecf78742f12 SRA:SRR6213491 https://www.encodeproject.org/files/ENCFF411TJB/@@download/ENCFF411TJB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF663NBI fastq reads ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF667DGY 2543386565 Michael Snyder, Stanford bf133ce0bfe9c771811974e7ffec68f3 SRA:SRR6213492 https://www.encodeproject.org/files/ENCFF663NBI/@@download/ENCFF663NBI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF165NMW fastq reads ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF411TJB 2160311489 Michael Snyder, Stanford 90163a2618e2b09cf3a9ef34d8faa83a SRA:SRR6213491 https://www.encodeproject.org/files/ENCFF165NMW/@@download/ENCFF165NMW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF667DGY fastq reads ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF663NBI 2512281033 Michael Snyder, Stanford 27b4b5f98c1c4c2765763ba17ebebfd9 SRA:SRR6213492 https://www.encodeproject.org/files/ENCFF667DGY/@@download/ENCFF667DGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF564MED bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF663NBI, ENCFF667DGY, ENCFF807MUK 4004727318 ENCODE Processing Pipeline fb1e494f5b94f6d8eb6e0cd6200e9943 https://www.encodeproject.org/files/ENCFF564MED/@@download/ENCFF564MED.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF079ISN bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF165NMW, ENCFF411TJB, ENCFF807MUK 3454448161 ENCODE Processing Pipeline 5a22116e6b9fdd774bd37460381a9d29 https://www.encodeproject.org/files/ENCFF079ISN/@@download/ENCFF079ISN.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF288GNC bigWig signal p-value ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF079ISN, ENCFF581ZJL 1057770002 ENCODE Processing Pipeline 48cbfbca191618e65744c4db4141140e https://www.encodeproject.org/files/ENCFF288GNC/@@download/ENCFF288GNC.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF557WFH bigWig signal p-value ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF051LWI, ENCFF564MED 1043533993 ENCODE Processing Pipeline 7f7032acdc8bf0967d63f2c525036494 https://www.encodeproject.org/files/ENCFF557WFH/@@download/ENCFF557WFH.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF765KWG bigWig signal p-value ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF079ISN, ENCFF564MED, ENCFF581ZJL 1832436405 ENCODE Processing Pipeline 57af81071e885b1745ebf2aa2a10c907 https://www.encodeproject.org/files/ENCFF765KWG/@@download/ENCFF765KWG.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF356PTU bigWig fold change over control ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF079ISN, ENCFF581ZJL 1052125504 ENCODE Processing Pipeline 734a2a84f63d1184389f1730429a5c52 https://www.encodeproject.org/files/ENCFF356PTU/@@download/ENCFF356PTU.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF387NCI bigWig fold change over control ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF051LWI, ENCFF564MED 1047730699 ENCODE Processing Pipeline 06361551a2821ff1a1e51f30e24b330b https://www.encodeproject.org/files/ENCFF387NCI/@@download/ENCFF387NCI.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF673WUS bigWig fold change over control ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF079ISN, ENCFF564MED, ENCFF581ZJL 1981862957 ENCODE Processing Pipeline a0c3fb15a53acb018ba933ff6e70e0ba https://www.encodeproject.org/files/ENCFF673WUS/@@download/ENCFF673WUS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF842STK bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF051LWI, ENCFF564MED 5744360 ENCODE Processing Pipeline dd0c6deb8ecd5d8954ff908d0cda5c4f https://www.encodeproject.org/files/ENCFF842STK/@@download/ENCFF842STK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF363FXM bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF079ISN, ENCFF581ZJL 6046627 ENCODE Processing Pipeline 668b680c249969f3157acbe573a4627e https://www.encodeproject.org/files/ENCFF363FXM/@@download/ENCFF363FXM.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF330YNZ bigBed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF363FXM 11329441 ENCODE Processing Pipeline 2ef777b9b029ee94dd96c05329a47561 https://www.encodeproject.org/files/ENCFF330YNZ/@@download/ENCFF330YNZ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF344ACD bigBed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF039BZL 11213190 ENCODE Processing Pipeline 12a2f2262cef2d5624356c77435d84b5 https://www.encodeproject.org/files/ENCFF344ACD/@@download/ENCFF344ACD.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF519BHR bigBed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF842STK 11267942 ENCODE Processing Pipeline ac338aca70b7da3b66af360a6f5ae83f https://www.encodeproject.org/files/ENCFF519BHR/@@download/ENCFF519BHR.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF039BZL bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF079ISN, ENCFF564MED, ENCFF581ZJL 7008942 ENCODE Processing Pipeline fb9d2f5bd12e39ed8efb1d32b5c0ddc1 https://www.encodeproject.org/files/ENCFF039BZL/@@download/ENCFF039BZL.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF998KXK bam unfiltered alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF165NMW, ENCFF411TJB, ENCFF643CGH 4829132725 ENCODE Processing Pipeline 0b66eb4f97cb07638255de3a54165c73 https://www.encodeproject.org/files/ENCFF998KXK/@@download/ENCFF998KXK.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF203EVC bam unfiltered alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF643CGH, ENCFF663NBI, ENCFF667DGY 5389763813 ENCODE Processing Pipeline 75831cb5cee19f7eeb65b07eebbfaf6f https://www.encodeproject.org/files/ENCFF203EVC/@@download/ENCFF203EVC.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF519OGB bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF165NMW, ENCFF411TJB, ENCFF643CGH 3455947623 ENCODE Processing Pipeline 77f9a1cdcabe935b7670481f47818324 https://www.encodeproject.org/files/ENCFF519OGB/@@download/ENCFF519OGB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF883BFY bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF643CGH, ENCFF663NBI, ENCFF667DGY 4005623520 ENCODE Processing Pipeline d649be16a109e60c79a897b9305baf17 https://www.encodeproject.org/files/ENCFF883BFY/@@download/ENCFF883BFY.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF124OYN bigWig signal p-value ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF519OGB, ENCFF910IKB 951537472 ENCODE Processing Pipeline cbd61f18148ba63cf3c3b9e462a4c052 https://www.encodeproject.org/files/ENCFF124OYN/@@download/ENCFF124OYN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF956HBR bigWig signal p-value ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF227IZS, ENCFF883BFY 1108234482 ENCODE Processing Pipeline 26cf5cd32bdc8cb4d19bdf0ea00fd40e https://www.encodeproject.org/files/ENCFF956HBR/@@download/ENCFF956HBR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF660YRA bigWig signal p-value ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF519OGB, ENCFF883BFY, ENCFF910IKB 1601181529 ENCODE Processing Pipeline 21c5b13b2127979a5ca24bf5154f28c5 https://www.encodeproject.org/files/ENCFF660YRA/@@download/ENCFF660YRA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF041SHP bigWig fold change over control ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF519OGB, ENCFF910IKB 1053282869 ENCODE Processing Pipeline 07fdad7e576162bbe91cad80131ac627 https://www.encodeproject.org/files/ENCFF041SHP/@@download/ENCFF041SHP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF437WOC bigWig fold change over control ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF227IZS, ENCFF883BFY 1030928226 ENCODE Processing Pipeline b802905e2f2ab8b07276119da0acc208 https://www.encodeproject.org/files/ENCFF437WOC/@@download/ENCFF437WOC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF996AGB bigWig fold change over control ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF519OGB, ENCFF883BFY, ENCFF910IKB 1974182853 ENCODE Processing Pipeline 410541d5dec0d0a0619b15864d075afd https://www.encodeproject.org/files/ENCFF996AGB/@@download/ENCFF996AGB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF119UAI bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF519OGB, ENCFF910IKB 5872244 ENCODE Processing Pipeline 8db5f2a2a0fb3522e9f6e54ef6187ea0 https://www.encodeproject.org/files/ENCFF119UAI/@@download/ENCFF119UAI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF839ELV bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF519OGB, ENCFF883BFY, ENCFF910IKB 6945062 ENCODE Processing Pipeline 19fe4186d00de02326eef7137fd72fa4 https://www.encodeproject.org/files/ENCFF839ELV/@@download/ENCFF839ELV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF367UIC bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF227IZS, ENCFF883BFY 5633886 ENCODE Processing Pipeline 71c8cb1bf04cf83b2941b2c6b7c55478 https://www.encodeproject.org/files/ENCFF367UIC/@@download/ENCFF367UIC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF690WDI bigBed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF119UAI 11325272 ENCODE Processing Pipeline 537a91b1ae14395b33f072ddb2419ee6 https://www.encodeproject.org/files/ENCFF690WDI/@@download/ENCFF690WDI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF437IZE bigBed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF367UIC 11257755 ENCODE Processing Pipeline 5ae29af0f7a38c756d5fcf5417f5df30 https://www.encodeproject.org/files/ENCFF437IZE/@@download/ENCFF437IZE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF736XCL bigBed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF839ELV 11230854 ENCODE Processing Pipeline e16cbd79935cf9eecde8d06104e3acfe https://www.encodeproject.org/files/ENCFF736XCL/@@download/ENCFF736XCL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF910CNE bigBed narrowPeak conservative idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF117NUA 116220 ENCODE Processing Pipeline 38313cda1334174a53b44bf09c924a54 https://www.encodeproject.org/files/ENCFF910CNE/@@download/ENCFF910CNE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF117NUA bed narrowPeak conservative idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF119UAI, ENCFF367UIC, ENCFF419RSJ, ENCFF839ELV 33462 ENCODE Processing Pipeline e11efa9b930efb873e3b402797ecfc18 https://www.encodeproject.org/files/ENCFF117NUA/@@download/ENCFF117NUA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF529BDW bed narrowPeak optimal idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF119UAI, ENCFF367UIC, ENCFF419RSJ, ENCFF839ELV 60816 ENCODE Processing Pipeline e9fcadd120f9c7e249d1df3815f3612a https://www.encodeproject.org/files/ENCFF529BDW/@@download/ENCFF529BDW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF323UOG bigBed narrowPeak optimal idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF529BDW 157034 ENCODE Processing Pipeline ca9ad0150a5915c5cf7a5991c59514e2 https://www.encodeproject.org/files/ENCFF323UOG/@@download/ENCFF323UOG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF808IJO bigBed narrowPeak optimal idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF494ZUY 143559 ENCODE Processing Pipeline cf63471f4ff14b7c12af9665ca1e4290 https://www.encodeproject.org/files/ENCFF808IJO/@@download/ENCFF808IJO.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF772GVZ bed narrowPeak conservative idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF039BZL, ENCFF363FXM, ENCFF842STK 28403 ENCODE Processing Pipeline c51ac9c07d89033d1ca39c9cefcb2b5f https://www.encodeproject.org/files/ENCFF772GVZ/@@download/ENCFF772GVZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF500HSN bigBed narrowPeak conservative idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF772GVZ 88816 ENCODE Processing Pipeline 745171bbae39e2ea72be57b2bea02bb9 https://www.encodeproject.org/files/ENCFF500HSN/@@download/ENCFF500HSN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF494ZUY bed narrowPeak optimal idr thresholded peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF039BZL, ENCFF363FXM, ENCFF842STK 52646 ENCODE Processing Pipeline d84d3f827e6208c9292af63c7bd62158 https://www.encodeproject.org/files/ENCFF494ZUY/@@download/ENCFF494ZUY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF352WCY fastq reads ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1324308629 Richard Myers, HAIB 90853bf8401b2d4902e2c524f6d312f7 SRA:SRR5338906 https://www.encodeproject.org/files/ENCFF352WCY/@@download/ENCFF352WCY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF823JNT fastq reads ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1394423875 Richard Myers, HAIB c42c9930fe1359d1f8b7db5ed4b82be6 SRA:SRR5338907 https://www.encodeproject.org/files/ENCFF823JNT/@@download/ENCFF823JNT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF848JSC bam unfiltered alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF352WCY, ENCFF643CGH 1576810370 ENCODE Processing Pipeline acffbf89abf83af23f76c05d08bd6617 https://www.encodeproject.org/files/ENCFF848JSC/@@download/ENCFF848JSC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF703SXU bam unfiltered alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF823JNT 1633358757 ENCODE Processing Pipeline 4190340a60a5f2fda8b14e6ab41e2d86 https://www.encodeproject.org/files/ENCFF703SXU/@@download/ENCFF703SXU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF969UPC bam unfiltered alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF823JNT 1630059602 ENCODE Processing Pipeline 72357b64f0d5c78ff451b54eddc02db9 https://www.encodeproject.org/files/ENCFF969UPC/@@download/ENCFF969UPC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF947JHU bam unfiltered alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF352WCY, ENCFF807MUK 1572742103 ENCODE Processing Pipeline 66bae589fb2444e539037bb0dcc1164b https://www.encodeproject.org/files/ENCFF947JHU/@@download/ENCFF947JHU.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF310MZC bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF823JNT 1204387995 ENCODE Processing Pipeline f6007eef6258e1cfba741299a9ba1655 https://www.encodeproject.org/files/ENCFF310MZC/@@download/ENCFF310MZC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF924HFP bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF352WCY, ENCFF643CGH 1170055517 ENCODE Processing Pipeline 0fe0059fd7312859063fce2222627d5b https://www.encodeproject.org/files/ENCFF924HFP/@@download/ENCFF924HFP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF023XMW bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF823JNT 1204878534 ENCODE Processing Pipeline b3f2d50545205ab07605f44daf9c935c https://www.encodeproject.org/files/ENCFF023XMW/@@download/ENCFF023XMW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF597IWX bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF352WCY, ENCFF807MUK 1169143059 ENCODE Processing Pipeline 1a88a1d1778d063b94479897f5c3c358 https://www.encodeproject.org/files/ENCFF597IWX/@@download/ENCFF597IWX.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF055MSO bigWig signal p-value ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF924HFP 534569924 ENCODE Processing Pipeline 690eb7dbecc391e972f753eebd5d7005 https://www.encodeproject.org/files/ENCFF055MSO/@@download/ENCFF055MSO.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515QIR bigWig signal p-value ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF023XMW 541380933 ENCODE Processing Pipeline ad49a76ef1a16c147f3b4c9e43997e2c https://www.encodeproject.org/files/ENCFF515QIR/@@download/ENCFF515QIR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF467IEW bigWig fold change over control ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF023XMW 480623006 ENCODE Processing Pipeline 17cca038b73f449c377bbfb7e8658d6a https://www.encodeproject.org/files/ENCFF467IEW/@@download/ENCFF467IEW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684NSX bigWig signal p-value ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF023XMW, ENCFF924HFP 643539204 ENCODE Processing Pipeline c2bb0d2ce923c1c79f7105dce444e1b9 https://www.encodeproject.org/files/ENCFF684NSX/@@download/ENCFF684NSX.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF131HKB bigWig fold change over control ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF924HFP 463726832 ENCODE Processing Pipeline 7c1e8ad72395c186c1a7dba68c28d4d0 https://www.encodeproject.org/files/ENCFF131HKB/@@download/ENCFF131HKB.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF914BGC bigWig fold change over control ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF023XMW, ENCFF924HFP 793383262 ENCODE Processing Pipeline 3e1daa39ce37a3d021ebe71e534a0b82 https://www.encodeproject.org/files/ENCFF914BGC/@@download/ENCFF914BGC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF349RRK bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF023XMW 6177906 ENCODE Processing Pipeline 7169811ed94548f2c520a5b03487f5c2 https://www.encodeproject.org/files/ENCFF349RRK/@@download/ENCFF349RRK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF283VFX bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF924HFP 5736508 ENCODE Processing Pipeline 4709bc0212d5bf69a80e222461914a48 https://www.encodeproject.org/files/ENCFF283VFX/@@download/ENCFF283VFX.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF080DKP bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF023XMW, ENCFF924HFP 6733688 ENCODE Processing Pipeline d94d6111fa10df06f2403857e2970156 https://www.encodeproject.org/files/ENCFF080DKP/@@download/ENCFF080DKP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF524KVC bigBed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF349RRK 12925204 ENCODE Processing Pipeline 48872071500a305bb6caaa385e2f4e2b https://www.encodeproject.org/files/ENCFF524KVC/@@download/ENCFF524KVC.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF942WOD bigBed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF283VFX 13182507 ENCODE Processing Pipeline f35a875ac3c7ca3d461333c800119838 https://www.encodeproject.org/files/ENCFF942WOD/@@download/ENCFF942WOD.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF286IVV bigBed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF080DKP 13045727 ENCODE Processing Pipeline 53e7d255b7e0708d1b403c3e4220cfac https://www.encodeproject.org/files/ENCFF286IVV/@@download/ENCFF286IVV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261LSG bed narrowPeak conservative idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF080DKP, ENCFF283VFX, ENCFF349RRK, ENCFF419RSJ 306462 ENCODE Processing Pipeline 94bbea0b742cb787554ec08c71c6543e https://www.encodeproject.org/files/ENCFF261LSG/@@download/ENCFF261LSG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF263GGJ bigBed narrowPeak conservative idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF261LSG 634075 ENCODE Processing Pipeline 1ff7e69c8bb978691d75a4dee87efed4 https://www.encodeproject.org/files/ENCFF263GGJ/@@download/ENCFF263GGJ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF186JAO bed narrowPeak optimal idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF080DKP, ENCFF283VFX, ENCFF349RRK, ENCFF419RSJ 402438 ENCODE Processing Pipeline 0371dbbe63d2165e722529096473a935 https://www.encodeproject.org/files/ENCFF186JAO/@@download/ENCFF186JAO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF764OWU bigBed narrowPeak optimal idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF186JAO 783794 ENCODE Processing Pipeline 6818870afccb06a699a0a5be69f42518 https://www.encodeproject.org/files/ENCFF764OWU/@@download/ENCFF764OWU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF159KLJ bigWig signal p-value ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF310MZC 1132251539 ENCODE Processing Pipeline cff85a32b8bba43fcbf35d652e43ee48 https://www.encodeproject.org/files/ENCFF159KLJ/@@download/ENCFF159KLJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF757NQY bigWig signal p-value ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF597IWX 1176537563 ENCODE Processing Pipeline 752405d0ddabe69cd00b8e504edb151f https://www.encodeproject.org/files/ENCFF757NQY/@@download/ENCFF757NQY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF381EAO bigWig signal p-value ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF310MZC, ENCFF597IWX 1423771691 ENCODE Processing Pipeline 1d435b8b80970004f5c2ea24de674587 https://www.encodeproject.org/files/ENCFF381EAO/@@download/ENCFF381EAO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF809PSS bigWig fold change over control ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF310MZC 845943961 ENCODE Processing Pipeline 3187561cfddd39440174c565e09f26b5 https://www.encodeproject.org/files/ENCFF809PSS/@@download/ENCFF809PSS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF704TAT bigWig fold change over control ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF597IWX 993987075 ENCODE Processing Pipeline aa6d4a0f458f1c5b96d0f47073fc2c4a https://www.encodeproject.org/files/ENCFF704TAT/@@download/ENCFF704TAT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF398CCH bigWig fold change over control ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF310MZC, ENCFF597IWX 1331939736 ENCODE Processing Pipeline d0f80ea7c02a18bcdcad12130d8bd5c3 https://www.encodeproject.org/files/ENCFF398CCH/@@download/ENCFF398CCH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003NLI bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF310MZC 6570162 ENCODE Processing Pipeline 9417575352a76fdd1e0faf53dba063ba https://www.encodeproject.org/files/ENCFF003NLI/@@download/ENCFF003NLI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF698JWD bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF597IWX 6699517 ENCODE Processing Pipeline 6fa2e25ecb6aa890d6760da657eef1fa https://www.encodeproject.org/files/ENCFF698JWD/@@download/ENCFF698JWD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF941APZ bigBed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF003NLI 12771785 ENCODE Processing Pipeline 2b0ad983753e16493e8913f792d5be0a https://www.encodeproject.org/files/ENCFF941APZ/@@download/ENCFF941APZ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF672NHK bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF310MZC, ENCFF597IWX 7051707 ENCODE Processing Pipeline 5b34738f2f7b3cc9f7dce3611d324f7a https://www.encodeproject.org/files/ENCFF672NHK/@@download/ENCFF672NHK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF137PXZ bigBed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF698JWD 13089367 ENCODE Processing Pipeline 3aca5302afcc4530382ac67b3b301020 https://www.encodeproject.org/files/ENCFF137PXZ/@@download/ENCFF137PXZ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF233BHF bigBed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF672NHK 12933567 ENCODE Processing Pipeline dae0d466678afd1449cd9d0bad5eaf03 https://www.encodeproject.org/files/ENCFF233BHF/@@download/ENCFF233BHF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF621XKU bed narrowPeak conservative idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF003NLI, ENCFF672NHK, ENCFF698JWD 260050 ENCODE Processing Pipeline 89a66a8d1183de925d4c335d2ee72181 https://www.encodeproject.org/files/ENCFF621XKU/@@download/ENCFF621XKU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF843WQE bigBed narrowPeak conservative idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF621XKU 483348 ENCODE Processing Pipeline a3d0267ecb30890c4ce521ccb2ac5d27 https://www.encodeproject.org/files/ENCFF843WQE/@@download/ENCFF843WQE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF838IUE bed narrowPeak optimal idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF003NLI, ENCFF672NHK, ENCFF698JWD 371369 ENCODE Processing Pipeline 0a37c5b68c207e118391e5e63198214c https://www.encodeproject.org/files/ENCFF838IUE/@@download/ENCFF838IUE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF848CGW bigBed narrowPeak optimal idr thresholded peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF838IUE 774325 ENCODE Processing Pipeline a90a0f07cfe4751566b39146eaaf707e https://www.encodeproject.org/files/ENCFF848CGW/@@download/ENCFF848CGW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF235XFK fastq reads ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF873YZS 2032927708 Michael Snyder, Stanford c173aab68177a89b168bc491fd6ba11c https://www.encodeproject.org/files/ENCFF235XFK/@@download/ENCFF235XFK.fastq.gz Illumina HiSeq 2000 /files/ENCFF858BWI/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF873YZS fastq reads ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF235XFK 2037651635 Michael Snyder, Stanford a1a7b6b635d61f011afb78fb945ba44c https://www.encodeproject.org/files/ENCFF873YZS/@@download/ENCFF873YZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF988ODF/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF672HFG bam alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF235XFK, ENCFF807MUK, ENCFF873YZS 2971476687 ENCODE Processing Pipeline 2966347beffa33baf38641d3f08b7cd7 https://www.encodeproject.org/files/ENCFF672HFG/@@download/ENCFF672HFG.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF028GGC fastq reads ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF549IAN 4141350447 Michael Snyder, Stanford 04966ed7b8e11a893f3939280b262752 https://www.encodeproject.org/files/ENCFF028GGC/@@download/ENCFF028GGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF858BWI/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF549IAN fastq reads ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF028GGC 4104588806 Michael Snyder, Stanford 77954d109b03488e282b15d43ab03fd6 https://www.encodeproject.org/files/ENCFF549IAN/@@download/ENCFF549IAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF988ODF/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF020USS bam unfiltered alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF028GGC, ENCFF235XFK, ENCFF549IAN, ENCFF643CGH, ENCFF873YZS 10840809884 ENCODE Processing Pipeline 24df5ac4befdd1808d8fa1396a86be6c https://www.encodeproject.org/files/ENCFF020USS/@@download/ENCFF020USS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF204XUZ bam unfiltered alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF028GGC, ENCFF235XFK, ENCFF549IAN, ENCFF807MUK, ENCFF873YZS 10848529480 ENCODE Processing Pipeline dc04eec0d5f5ce0600871451c85f56d1 https://www.encodeproject.org/files/ENCFF204XUZ/@@download/ENCFF204XUZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF127YRH bam alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF028GGC, ENCFF235XFK, ENCFF549IAN, ENCFF807MUK, ENCFF873YZS 4936443720 ENCODE Processing Pipeline cf1ee8b055cdc6fc6d6b54954fc8a743 https://www.encodeproject.org/files/ENCFF127YRH/@@download/ENCFF127YRH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF530VNF bam alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF028GGC, ENCFF235XFK, ENCFF549IAN, ENCFF643CGH, ENCFF873YZS 4943309999 ENCODE Processing Pipeline 654f199f1a777fd80ff42351efe200c0 https://www.encodeproject.org/files/ENCFF530VNF/@@download/ENCFF530VNF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF427ECQ bam unfiltered alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTQ, ENCFF002EGZ, ENCFF807MUK 6392787769 ENCODE Processing Pipeline 8dcb483a93770801dd53a94cf4b58634 https://www.encodeproject.org/files/ENCFF427ECQ/@@download/ENCFF427ECQ.bam hg19 released antibody characterized with exemption ENCFF778RJH bam unfiltered alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EGV, ENCFF002EHC, ENCFF807MUK 6756388466 ENCODE Processing Pipeline 13c946b29477e4cbe45e2c1997d7847c https://www.encodeproject.org/files/ENCFF778RJH/@@download/ENCFF778RJH.bam hg19 released antibody characterized with exemption ENCFF903RMF bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF061KWB, ENCFF511YMN, ENCFF583FAG 1659534769 ENCODE Processing Pipeline 68a806f1d326a6162dfc2e11de57eb08 https://www.encodeproject.org/files/ENCFF903RMF/@@download/ENCFF903RMF.bigWig hg19 released antibody characterized with exemption ENCFF002DTQ fastq reads ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGZ 2899199245 Michael Snyder, Stanford 19578bf4c0a0fb729062a8ee0b4d296f SRA:SRR5111461 https://www.encodeproject.org/files/ENCFF002DTQ/@@download/ENCFF002DTQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released antibody characterized with exemption ENCFF002EGV fastq reads ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHC 3099888317 Michael Snyder, Stanford fcdb004cfd4a0ba5863b2764a4d45cd3 SRA:SRR5111460 https://www.encodeproject.org/files/ENCFF002EGV/@@download/ENCFF002EGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released antibody characterized with exemption ENCFF002EGZ fastq reads ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DTQ 2939666120 Michael Snyder, Stanford ce222bcab7a74dfe9fbb4bd5b6b3526f SRA:SRR5111461 https://www.encodeproject.org/files/ENCFF002EGZ/@@download/ENCFF002EGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released antibody characterized with exemption ENCFF002EHC fastq reads ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EGV 3176906810 Michael Snyder, Stanford 621bc8c9329a6d3ff233cd673db106fc SRA:SRR5111460 https://www.encodeproject.org/files/ENCFF002EHC/@@download/ENCFF002EHC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released antibody characterized with exemption ENCFF822KRU bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF061KWB, ENCFF511YMN, ENCFF583FAG 2247789777 ENCODE Processing Pipeline 2de79c52e4ddb14f9309a443d1196bc2 https://www.encodeproject.org/files/ENCFF822KRU/@@download/ENCFF822KRU.bigWig hg19 released antibody characterized with exemption ENCFF007YBE bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG 6563632 ENCODE Processing Pipeline ad014830373e820bb80a858b76bc0a3b https://www.encodeproject.org/files/ENCFF007YBE/@@download/ENCFF007YBE.bed.gz hg19 released antibody characterized with exemption ENCFF078PIE bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 6311743 ENCODE Processing Pipeline ee37f60c860060fa2eddc8e9ed804e77 https://www.encodeproject.org/files/ENCFF078PIE/@@download/ENCFF078PIE.bed.gz hg19 released antibody characterized with exemption ENCFF537PXG bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF007YBE 11377706 ENCODE Processing Pipeline b835ac3fc574912ebd88b3ba1eae4828 https://www.encodeproject.org/files/ENCFF537PXG/@@download/ENCFF537PXG.bigBed hg19 released antibody characterized with exemption ENCFF232YBQ bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF061KWB, ENCFF511YMN, ENCFF583FAG 7166349 ENCODE Processing Pipeline 1d4325ece2965a5d5f34c298d7f9aeef https://www.encodeproject.org/files/ENCFF232YBQ/@@download/ENCFF232YBQ.bed.gz hg19 released antibody characterized with exemption ENCFF175FQE bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF232YBQ 13349963 ENCODE Processing Pipeline 87f898b59c8ddd50061cbfa9424b2d62 https://www.encodeproject.org/files/ENCFF175FQE/@@download/ENCFF175FQE.bigBed hg19 released antibody characterized with exemption ENCFF935BZA bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF078PIE 11154715 ENCODE Processing Pipeline 06055f2b08efb9281e2dbd5249b51ac2 https://www.encodeproject.org/files/ENCFF935BZA/@@download/ENCFF935BZA.bigBed hg19 released antibody characterized with exemption ENCFF841YCJ bigBed narrowPeak conservative idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF683THQ 308911 ENCODE Processing Pipeline f9272503148e3c0131b2ebb8bb06df23 https://www.encodeproject.org/files/ENCFF841YCJ/@@download/ENCFF841YCJ.bigBed hg19 released antibody characterized with exemption ENCFF683THQ bed narrowPeak conservative idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF007YBE, ENCFF078PIE, ENCFF232YBQ 141381 ENCODE Processing Pipeline dee8ce98af68495303046de51dba5a35 https://www.encodeproject.org/files/ENCFF683THQ/@@download/ENCFF683THQ.bed.gz hg19 released antibody characterized with exemption ENCFF965ZRH bed narrowPeak optimal idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF007YBE, ENCFF078PIE, ENCFF232YBQ 230360 ENCODE Processing Pipeline 034fb3e1a66d522847d0967705c3236c https://www.encodeproject.org/files/ENCFF965ZRH/@@download/ENCFF965ZRH.bed.gz hg19 released antibody characterized with exemption ENCFF422UPX bigBed narrowPeak optimal idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF965ZRH 439825 ENCODE Processing Pipeline 0f5a7a5c5093a03e2593edfa9733eef0 https://www.encodeproject.org/files/ENCFF422UPX/@@download/ENCFF422UPX.bigBed hg19 released antibody characterized with exemption ENCFF061KWB bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EGV, ENCFF002EHC, ENCFF807MUK 5828328579 ENCODE Processing Pipeline 99ec458e7f53cd2d19489f6adeb6ccd3 https://www.encodeproject.org/files/ENCFF061KWB/@@download/ENCFF061KWB.bam hg19 released antibody characterized with exemption ENCFF511YMN bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTQ, ENCFF002EGZ, ENCFF807MUK 5534624968 ENCODE Processing Pipeline 9f8157b7e6cb29f3b5c5ea0c9fc51bfa https://www.encodeproject.org/files/ENCFF511YMN/@@download/ENCFF511YMN.bam hg19 released antibody characterized with exemption ENCFF468VXA bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG 1426278212 ENCODE Processing Pipeline 46f30dd774c93e59ae036ef812c5f87e https://www.encodeproject.org/files/ENCFF468VXA/@@download/ENCFF468VXA.bigWig hg19 released antibody characterized with exemption ENCFF129IZI bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 1128011006 ENCODE Processing Pipeline 11413e4bd8f48d449d34322acd73ffb0 https://www.encodeproject.org/files/ENCFF129IZI/@@download/ENCFF129IZI.bigWig hg19 released antibody characterized with exemption ENCFF911ALP bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF061KWB, ENCFF511YMN, ENCFF583FAG 1649784590 ENCODE Processing Pipeline c8bc7eab6e1ac397ffe72ec1f44d7c3e https://www.encodeproject.org/files/ENCFF911ALP/@@download/ENCFF911ALP.bigWig hg19 archived antibody characterized with exemption ENCFF495NBD bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG 1761877209 ENCODE Processing Pipeline c1ed71df9fbf89975613f1e51159ec42 https://www.encodeproject.org/files/ENCFF495NBD/@@download/ENCFF495NBD.bigWig hg19 released antibody characterized with exemption ENCFF622KHQ bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 1313187715 ENCODE Processing Pipeline 41e3b0e948ba6065a8005d02f9e4b3a5 https://www.encodeproject.org/files/ENCFF622KHQ/@@download/ENCFF622KHQ.bigWig hg19 released antibody characterized with exemption ENCFF730HVB bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 6464073 ENCODE Processing Pipeline abd3110af11b2e8ce9790aa37353990d https://www.encodeproject.org/files/ENCFF730HVB/@@download/ENCFF730HVB.bed.gz hg19 archived antibody characterized with exemption ENCFF150QNO bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF061KWB, ENCFF511YMN, ENCFF583FAG 2240989744 ENCODE Processing Pipeline 9ba8fddfc314b7d710e775bb9c3890cd https://www.encodeproject.org/files/ENCFF150QNO/@@download/ENCFF150QNO.bigWig hg19 archived antibody characterized with exemption ENCFF358UBC bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG 6695357 ENCODE Processing Pipeline 5323de1ce8d1493e877c1d2d59bf3126 https://www.encodeproject.org/files/ENCFF358UBC/@@download/ENCFF358UBC.bed.gz hg19 archived antibody characterized with exemption ENCFF774YZA bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF061KWB, ENCFF511YMN, ENCFF583FAG 7201998 ENCODE Processing Pipeline c5a18cd80b9ab04e2d188f101a38700e https://www.encodeproject.org/files/ENCFF774YZA/@@download/ENCFF774YZA.bed.gz hg19 archived antibody characterized with exemption ENCFF695OHJ bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF358UBC 11384315 ENCODE Processing Pipeline 11e27ddfcbc18f30652abd622f09d98d https://www.encodeproject.org/files/ENCFF695OHJ/@@download/ENCFF695OHJ.bigBed hg19 archived antibody characterized with exemption ENCFF466SOU bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF730HVB 11164423 ENCODE Processing Pipeline 470459c8756a73de30a47cdf70badb03 https://www.encodeproject.org/files/ENCFF466SOU/@@download/ENCFF466SOU.bigBed hg19 archived antibody characterized with exemption ENCFF290QBW bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF774YZA 13360765 ENCODE Processing Pipeline f175c6b8b1e2c6872d9ffa5ed801cfd3 https://www.encodeproject.org/files/ENCFF290QBW/@@download/ENCFF290QBW.bigBed hg19 archived antibody characterized with exemption ENCFF123XST bam unfiltered alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EGV, ENCFF002EHC, ENCFF643CGH 6769230652 ENCODE Processing Pipeline 34040177f3a04e5cda05af6dee57cb0d https://www.encodeproject.org/files/ENCFF123XST/@@download/ENCFF123XST.bam GRCh38 released antibody characterized with exemption ENCFF171UMF bam unfiltered alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTQ, ENCFF002EGZ, ENCFF643CGH 6406310517 ENCODE Processing Pipeline 4c8769f0aa27a445e629144331199a30 https://www.encodeproject.org/files/ENCFF171UMF/@@download/ENCFF171UMF.bam GRCh38 released antibody characterized with exemption ENCFF742QMN bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EGV, ENCFF002EHC, ENCFF643CGH 5832863355 ENCODE Processing Pipeline 50fdceda3abcdfab5b47ba8660b13cdb https://www.encodeproject.org/files/ENCFF742QMN/@@download/ENCFF742QMN.bam GRCh38 released antibody characterized with exemption ENCFF316XFC bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTQ, ENCFF002EGZ, ENCFF643CGH 5539352921 ENCODE Processing Pipeline f9ac9d0cfd6844bd805838db7a6297a5 https://www.encodeproject.org/files/ENCFF316XFC/@@download/ENCFF316XFC.bam GRCh38 released antibody characterized with exemption ENCFF551NOV bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF742QMN 1440895889 ENCODE Processing Pipeline d1d1008a03823962dfd397accf239b15 https://www.encodeproject.org/files/ENCFF551NOV/@@download/ENCFF551NOV.bigWig GRCh38 released antibody characterized with exemption ENCFF583NEM bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF316XFC 1102973605 ENCODE Processing Pipeline a7df32ff3cf6fb6ca28097a41dde02ef https://www.encodeproject.org/files/ENCFF583NEM/@@download/ENCFF583NEM.bigWig GRCh38 released antibody characterized with exemption ENCFF218KPC bigWig signal p-value ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF316XFC, ENCFF426RDP, ENCFF742QMN 1816300679 ENCODE Processing Pipeline 9cf1a354fbca7e12f5e5cc2ee284b702 https://www.encodeproject.org/files/ENCFF218KPC/@@download/ENCFF218KPC.bigWig GRCh38 released antibody characterized with exemption ENCFF504FDN bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF742QMN 1701283101 ENCODE Processing Pipeline e8c302c5b278450e3cca7b7aa8019e4b https://www.encodeproject.org/files/ENCFF504FDN/@@download/ENCFF504FDN.bigWig GRCh38 released antibody characterized with exemption ENCFF087XPV bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF316XFC 1315280987 ENCODE Processing Pipeline f15a99aa23aaec1fb73a9038cbe68f36 https://www.encodeproject.org/files/ENCFF087XPV/@@download/ENCFF087XPV.bigWig GRCh38 released antibody characterized with exemption ENCFF531VTG bigWig fold change over control ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF316XFC, ENCFF426RDP, ENCFF742QMN 2269779728 ENCODE Processing Pipeline b687a0a3caa75b5eec6baad3ccde42bc https://www.encodeproject.org/files/ENCFF531VTG/@@download/ENCFF531VTG.bigWig GRCh38 released antibody characterized with exemption ENCFF850VUR bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF742QMN 6569483 ENCODE Processing Pipeline 018435500a57e0182fe059293c92fc19 https://www.encodeproject.org/files/ENCFF850VUR/@@download/ENCFF850VUR.bed.gz GRCh38 released antibody characterized with exemption ENCFF134HIB bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF316XFC 6312818 ENCODE Processing Pipeline fd72e24813d4c65a8be863b26c25b428 https://www.encodeproject.org/files/ENCFF134HIB/@@download/ENCFF134HIB.bed.gz GRCh38 released antibody characterized with exemption ENCFF829XTD bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF316XFC, ENCFF426RDP, ENCFF742QMN 7172464 ENCODE Processing Pipeline afae50f4daa346d7bdd31d49c79390b9 https://www.encodeproject.org/files/ENCFF829XTD/@@download/ENCFF829XTD.bed.gz GRCh38 released antibody characterized with exemption ENCFF021WPE bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF850VUR 11398584 ENCODE Processing Pipeline 5ad2bc4ea31e6e28196f5d712a4c4bca https://www.encodeproject.org/files/ENCFF021WPE/@@download/ENCFF021WPE.bigBed GRCh38 released antibody characterized with exemption ENCFF850VDR bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF134HIB 11170773 ENCODE Processing Pipeline 29d5d7685c7ccf9240f87f2ebfdd4a81 https://www.encodeproject.org/files/ENCFF850VDR/@@download/ENCFF850VDR.bigBed GRCh38 released antibody characterized with exemption ENCFF503XZE bigBed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF829XTD 13382695 ENCODE Processing Pipeline ec1a4344ee4a597a00a52e2c4e2cfb96 https://www.encodeproject.org/files/ENCFF503XZE/@@download/ENCFF503XZE.bigBed GRCh38 released antibody characterized with exemption ENCFF088ADT bed narrowPeak conservative idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF134HIB, ENCFF419RSJ, ENCFF829XTD, ENCFF850VUR 143680 ENCODE Processing Pipeline b3a34d202fdd7de523824e917000eeab https://www.encodeproject.org/files/ENCFF088ADT/@@download/ENCFF088ADT.bed.gz GRCh38 released antibody characterized with exemption ENCFF495JHS bigBed narrowPeak conservative idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF088ADT 312921 ENCODE Processing Pipeline 8f033e4ba58195584e31b7c421279191 https://www.encodeproject.org/files/ENCFF495JHS/@@download/ENCFF495JHS.bigBed GRCh38 released antibody characterized with exemption ENCFF225VFR bed narrowPeak optimal idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF134HIB, ENCFF419RSJ, ENCFF829XTD, ENCFF850VUR 170878 ENCODE Processing Pipeline 7c9b43e799b3652b798798894cde449f https://www.encodeproject.org/files/ENCFF225VFR/@@download/ENCFF225VFR.bed.gz GRCh38 released antibody characterized with exemption ENCFF836RIR bigBed narrowPeak optimal idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF225VFR 355743 ENCODE Processing Pipeline 219dd2a626b78d36ca433502e0634770 https://www.encodeproject.org/files/ENCFF836RIR/@@download/ENCFF836RIR.bigBed GRCh38 released antibody characterized with exemption ENCFF493NQT bigBed narrowPeak conservative idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF847RDD 225095 ENCODE Processing Pipeline 5c61d994e26b175be40956e19a554b16 https://www.encodeproject.org/files/ENCFF493NQT/@@download/ENCFF493NQT.bigBed hg19 archived antibody characterized with exemption ENCFF847RDD bed narrowPeak conservative idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF358UBC, ENCFF730HVB, ENCFF774YZA 116764 ENCODE Processing Pipeline ad1ae54c8a8b4baa3bc6a03725640d3f https://www.encodeproject.org/files/ENCFF847RDD/@@download/ENCFF847RDD.bed.gz hg19 archived antibody characterized with exemption ENCFF712UDN bed narrowPeak optimal idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF358UBC, ENCFF730HVB, ENCFF774YZA 185909 ENCODE Processing Pipeline e5f656c30eb3a3926efc3d5a30075e57 https://www.encodeproject.org/files/ENCFF712UDN/@@download/ENCFF712UDN.bed.gz hg19 archived antibody characterized with exemption ENCFF037KIH bigBed narrowPeak optimal idr thresholded peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF712UDN 377471 ENCODE Processing Pipeline e3ed3e2b3879c82ab77ce4530ffaa44a https://www.encodeproject.org/files/ENCFF037KIH/@@download/ENCFF037KIH.bigBed hg19 archived antibody characterized with exemption ENCFF632BHK fastq reads ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF047AKE 2251019611 Michael Snyder, Stanford 4cbe90e34d7c7514eece9b13fc6a95ad SRA:SRR6214193 https://www.encodeproject.org/files/ENCFF632BHK/@@download/ENCFF632BHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF217QHT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF047AKE fastq reads ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF632BHK 2253749809 Michael Snyder, Stanford a4d42c3adb9baf5824b52d780b24e9bb SRA:SRR6214193 https://www.encodeproject.org/files/ENCFF047AKE/@@download/ENCFF047AKE.fastq.gz Illumina HiSeq 2000 /files/ENCFF084TFW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF471DLO bam alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF047AKE, ENCFF632BHK, ENCFF807MUK 3842445277 ENCODE Processing Pipeline 2103dca7742c5737f150f0f3fd88b8e0 https://www.encodeproject.org/files/ENCFF471DLO/@@download/ENCFF471DLO.bam hg19 archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF585OIE fastq reads ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF275CUA 4730629849 Michael Snyder, Stanford a10b4bbd9a3b4a3bf364fa02c443ba42 SRA:SRR6214194 https://www.encodeproject.org/files/ENCFF585OIE/@@download/ENCFF585OIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF084TFW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF275CUA fastq reads ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF585OIE 4778911581 Michael Snyder, Stanford 043a59c58c2f7623ad8ab481ce2614a0 SRA:SRR6214194 https://www.encodeproject.org/files/ENCFF275CUA/@@download/ENCFF275CUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF217QHT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF116AYG bam unfiltered alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF047AKE, ENCFF275CUA, ENCFF585OIE, ENCFF632BHK, ENCFF643CGH 12799775084 ENCODE Processing Pipeline ec5a0e45fdc4ebbe08a070e6f9af897a https://www.encodeproject.org/files/ENCFF116AYG/@@download/ENCFF116AYG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF484ACL bam unfiltered alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF047AKE, ENCFF275CUA, ENCFF585OIE, ENCFF632BHK, ENCFF807MUK 12797105150 ENCODE Processing Pipeline 195990e566745e401e8e94e3a195e94d https://www.encodeproject.org/files/ENCFF484ACL/@@download/ENCFF484ACL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF256UVH bam alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF047AKE, ENCFF275CUA, ENCFF585OIE, ENCFF632BHK, ENCFF643CGH 7839774332 ENCODE Processing Pipeline 24b765a991c8d354aa0c0df67db8c6dc https://www.encodeproject.org/files/ENCFF256UVH/@@download/ENCFF256UVH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF936JKF bam alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF047AKE, ENCFF275CUA, ENCFF585OIE, ENCFF632BHK, ENCFF807MUK 7831349759 ENCODE Processing Pipeline 08657b7848f39a73951c836b9906bca3 https://www.encodeproject.org/files/ENCFF936JKF/@@download/ENCFF936JKF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF979TWD bigWig signal p-value ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF595PUD, ENCFF936JKF 985995319 ENCODE Processing Pipeline f60cbf1b084308612dc42565f9984db8 https://www.encodeproject.org/files/ENCFF979TWD/@@download/ENCFF979TWD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF126TOP bigBed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF856FKS 11411854 ENCODE Processing Pipeline e289cc58077db9b183df145fe4da2545 https://www.encodeproject.org/files/ENCFF126TOP/@@download/ENCFF126TOP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF856FKS bed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF595PUD, ENCFF936JKF 5771661 ENCODE Processing Pipeline 808715f13a98f4f910cdb02c9dd57904 https://www.encodeproject.org/files/ENCFF856FKS/@@download/ENCFF856FKS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF148LAV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF856FKS 233770 ENCODE Processing Pipeline 079bfee266a2afae180dc1daead26294 https://www.encodeproject.org/files/ENCFF148LAV/@@download/ENCFF148LAV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF469JVL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF148LAV 389815 ENCODE Processing Pipeline 8c6a310849762b6f058be632a5842b86 https://www.encodeproject.org/files/ENCFF469JVL/@@download/ENCFF469JVL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF173OVC bigWig fold change over control ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF595PUD, ENCFF936JKF 1496402855 ENCODE Processing Pipeline 5a469e6ed190515e7ad5824ed6e4f963 https://www.encodeproject.org/files/ENCFF173OVC/@@download/ENCFF173OVC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF102XCU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF854YVQ 235948 ENCODE Processing Pipeline a85c1d715a9a0cf315f689b2566eb281 https://www.encodeproject.org/files/ENCFF102XCU/@@download/ENCFF102XCU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF111EIE bigBed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF854YVQ 11446237 ENCODE Processing Pipeline 798a5b6a55a2aa302d34eb72fc97a9e4 https://www.encodeproject.org/files/ENCFF111EIE/@@download/ENCFF111EIE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF139IRU bigWig signal p-value ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016UQX, ENCFF256UVH 988028013 ENCODE Processing Pipeline 4fe60927e0b4257d1ac056746ee8122d https://www.encodeproject.org/files/ENCFF139IRU/@@download/ENCFF139IRU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF854YVQ bed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016UQX, ENCFF256UVH 5785678 ENCODE Processing Pipeline 253f41dd879eea5d7f9a0db125d11f2e https://www.encodeproject.org/files/ENCFF854YVQ/@@download/ENCFF854YVQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF109TWH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF102XCU 395480 ENCODE Processing Pipeline 6738abe3fae6adbe8fcd37b7389153a4 https://www.encodeproject.org/files/ENCFF109TWH/@@download/ENCFF109TWH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF743FWJ bigWig fold change over control ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016UQX, ENCFF256UVH 1519933287 ENCODE Processing Pipeline 39535d6c48e4f580809ee21b647d7b4a https://www.encodeproject.org/files/ENCFF743FWJ/@@download/ENCFF743FWJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF868EAF bam unfiltered alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 100 ENCFF014DOG, ENCFF284BOO, ENCFF807MUK 8002582729 ENCODE Processing Pipeline 0db5dd185038522ec00999ddebbfe5ca https://www.encodeproject.org/files/ENCFF868EAF/@@download/ENCFF868EAF.bam hg19 released control low read depth, missing genetic modification characterization ENCFF235MBT bam unfiltered alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 100 ENCFF398EAS, ENCFF493SOQ, ENCFF807MUK 4306691050 ENCODE Processing Pipeline e41985e55a4f1d6cf29f68b0ec8dd52f https://www.encodeproject.org/files/ENCFF235MBT/@@download/ENCFF235MBT.bam hg19 released control low read depth, missing genetic modification characterization ENCFF014DOG fastq reads ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF284BOO 3728365508 Michael Snyder, Stanford 8134996da44c3584dc9ae5c07292be9e SRA:SRR5112096 https://www.encodeproject.org/files/ENCFF014DOG/@@download/ENCFF014DOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF898SRJ/ released control low read depth, missing genetic modification characterization ENCFF493SOQ fastq reads ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF398EAS 1914365016 Michael Snyder, Stanford 77ff95dafcfa488459374b51bcb365ea SRA:SRR5112097 https://www.encodeproject.org/files/ENCFF493SOQ/@@download/ENCFF493SOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF703OVM/ released control low read depth, missing genetic modification characterization ENCFF398EAS fastq reads ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF493SOQ 1916396074 Michael Snyder, Stanford fc7ccc0071a78c041029b9aa35fc91a4 SRA:SRR5112097 https://www.encodeproject.org/files/ENCFF398EAS/@@download/ENCFF398EAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF898SRJ/ released control low read depth, missing genetic modification characterization ENCFF284BOO fastq reads ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF014DOG 3724180528 Michael Snyder, Stanford 4ef704a81b6c546e232e40f660a0b067 SRA:SRR5112096 https://www.encodeproject.org/files/ENCFF284BOO/@@download/ENCFF284BOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF703OVM/ released control low read depth, missing genetic modification characterization ENCFF143UTJ bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 100 ENCFF398EAS, ENCFF493SOQ, ENCFF807MUK 3697644036 ENCODE Processing Pipeline 6dfc728a5983c5d7b273be0ae109388a https://www.encodeproject.org/files/ENCFF143UTJ/@@download/ENCFF143UTJ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF811OUA bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 100 ENCFF014DOG, ENCFF284BOO, ENCFF807MUK 6770053501 ENCODE Processing Pipeline b626d7a211acd5969cc2dfecb44c0e99 https://www.encodeproject.org/files/ENCFF811OUA/@@download/ENCFF811OUA.bam hg19 released control low read depth, missing genetic modification characterization ENCFF506SIR bigWig signal p-value ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF811OUA, ENCFF930DZH 688394426 ENCODE Processing Pipeline 7b19bb7fafc9f2acb8e210494a71aa37 https://www.encodeproject.org/files/ENCFF506SIR/@@download/ENCFF506SIR.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF727HEB bigWig signal p-value ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF143UTJ, ENCFF930DZH 704347824 ENCODE Processing Pipeline 84b2d64d45f5000c4a87e58701f51820 https://www.encodeproject.org/files/ENCFF727HEB/@@download/ENCFF727HEB.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF954PLR bigWig fold change over control ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF811OUA, ENCFF930DZH 1142289005 ENCODE Processing Pipeline 86fa797e9f2315bde69b24602755664c https://www.encodeproject.org/files/ENCFF954PLR/@@download/ENCFF954PLR.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF780ABV bigWig signal p-value ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF143UTJ, ENCFF811OUA, ENCFF930DZH 670162455 ENCODE Processing Pipeline f05592d5436ea431458c4ca52544dc64 https://www.encodeproject.org/files/ENCFF780ABV/@@download/ENCFF780ABV.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF247LID bigWig fold change over control ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF143UTJ, ENCFF930DZH 753184631 ENCODE Processing Pipeline 5c7425d8752e060e9d5510e5931ee63d https://www.encodeproject.org/files/ENCFF247LID/@@download/ENCFF247LID.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF380LKG bigWig fold change over control ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF143UTJ, ENCFF811OUA, ENCFF930DZH 1587950130 ENCODE Processing Pipeline 63a9b28ee9d88dc78d2c34d331a63263 https://www.encodeproject.org/files/ENCFF380LKG/@@download/ENCFF380LKG.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF575RVG bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF143UTJ, ENCFF930DZH 5377635 ENCODE Processing Pipeline 5a7b9d48c880acef56539f484bac771f https://www.encodeproject.org/files/ENCFF575RVG/@@download/ENCFF575RVG.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF324NUW bigBed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF575RVG 11053917 ENCODE Processing Pipeline 1fde344a473789371e658df0a38b5de1 https://www.encodeproject.org/files/ENCFF324NUW/@@download/ENCFF324NUW.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF597WGL bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF143UTJ, ENCFF811OUA, ENCFF930DZH 6898473 ENCODE Processing Pipeline e49f7c3e1565644a28c7115c97376563 https://www.encodeproject.org/files/ENCFF597WGL/@@download/ENCFF597WGL.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF225CMV bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF811OUA, ENCFF930DZH 6133241 ENCODE Processing Pipeline 61a68c1a03eaf0f52bcfe393211fd5ec https://www.encodeproject.org/files/ENCFF225CMV/@@download/ENCFF225CMV.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF297KNZ bigBed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF225CMV 11114824 ENCODE Processing Pipeline d8690f47feb8ab96d095e3fb47db128a https://www.encodeproject.org/files/ENCFF297KNZ/@@download/ENCFF297KNZ.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF267OZU bigBed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF597WGL 11058322 ENCODE Processing Pipeline 960c09a3b00b872ca2402f353471386f https://www.encodeproject.org/files/ENCFF267OZU/@@download/ENCFF267OZU.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF898IOL bam unfiltered alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 100 ENCFF398EAS, ENCFF493SOQ, ENCFF643CGH 4313667152 ENCODE Processing Pipeline 21f6e4300e0917d8a4f58ca4a0303d34 https://www.encodeproject.org/files/ENCFF898IOL/@@download/ENCFF898IOL.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF541FEN bam unfiltered alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 100 ENCFF014DOG, ENCFF284BOO, ENCFF643CGH 8014838752 ENCODE Processing Pipeline 799278549f410f57219505eec4918b67 https://www.encodeproject.org/files/ENCFF541FEN/@@download/ENCFF541FEN.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF498EFE bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 100 ENCFF398EAS, ENCFF493SOQ, ENCFF643CGH 3701443888 ENCODE Processing Pipeline c39b60298ec20142f8b332ce95ce8f7c https://www.encodeproject.org/files/ENCFF498EFE/@@download/ENCFF498EFE.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF302OZO bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 100 ENCFF014DOG, ENCFF284BOO, ENCFF643CGH 6777189763 ENCODE Processing Pipeline 7e64338a9e3ef841c79f325c2694a4f2 https://www.encodeproject.org/files/ENCFF302OZO/@@download/ENCFF302OZO.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF071FAZ bigWig signal p-value ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF302OZO, ENCFF390ATQ 689509630 ENCODE Processing Pipeline 022df2fbbf4a4dd4780ae0f8c0689b74 https://www.encodeproject.org/files/ENCFF071FAZ/@@download/ENCFF071FAZ.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF532BWG bigWig signal p-value ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF390ATQ, ENCFF498EFE 705570182 ENCODE Processing Pipeline ecd0dde74541117073124fce772bcf6c https://www.encodeproject.org/files/ENCFF532BWG/@@download/ENCFF532BWG.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF157QUC bigWig signal p-value ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF302OZO, ENCFF390ATQ, ENCFF498EFE 671232868 ENCODE Processing Pipeline 4b9d1e940ecd7d937f2e7a9a71808dee https://www.encodeproject.org/files/ENCFF157QUC/@@download/ENCFF157QUC.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF010GVG bigWig fold change over control ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF302OZO, ENCFF390ATQ 1140399739 ENCODE Processing Pipeline ab140349251abc5cd3db534217dfb6a5 https://www.encodeproject.org/files/ENCFF010GVG/@@download/ENCFF010GVG.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF629ITZ bigWig fold change over control ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF390ATQ, ENCFF498EFE 757339408 ENCODE Processing Pipeline 990629422cb8b847da01580aa5adeffe https://www.encodeproject.org/files/ENCFF629ITZ/@@download/ENCFF629ITZ.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF281HGI bigWig fold change over control ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF302OZO, ENCFF390ATQ, ENCFF498EFE 1592389032 ENCODE Processing Pipeline 2c4bb859a31d2d6a30d12f6cf89163f4 https://www.encodeproject.org/files/ENCFF281HGI/@@download/ENCFF281HGI.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF672SIR bigBed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF500RYU 11112201 ENCODE Processing Pipeline b964d13a4e5f9ed9f6553b556334f95f https://www.encodeproject.org/files/ENCFF672SIR/@@download/ENCFF672SIR.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF431JHH bigBed narrowPeak conservative idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF410PQD 123803 ENCODE Processing Pipeline 28aefdc9bdc5575e68b4fa3571423a15 https://www.encodeproject.org/files/ENCFF431JHH/@@download/ENCFF431JHH.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF467UQI bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF390ATQ, ENCFF498EFE 5168427 ENCODE Processing Pipeline 139e1651dd628ccb2ee1f77bbd149d11 https://www.encodeproject.org/files/ENCFF467UQI/@@download/ENCFF467UQI.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF549AHZ bigBed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF467UQI 10997705 ENCODE Processing Pipeline 153f0c4c95eaf0e1ba6ff9de39106721 https://www.encodeproject.org/files/ENCFF549AHZ/@@download/ENCFF549AHZ.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF648ZZS bigBed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF110CRQ 11077505 ENCODE Processing Pipeline eaadb258e9b9230697f0b8b1c2434f2f https://www.encodeproject.org/files/ENCFF648ZZS/@@download/ENCFF648ZZS.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF110CRQ bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF302OZO, ENCFF390ATQ, ENCFF498EFE 6781330 ENCODE Processing Pipeline d799a164a6f25b8ec54a5fafc08dee77 https://www.encodeproject.org/files/ENCFF110CRQ/@@download/ENCFF110CRQ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF410PQD bed narrowPeak conservative idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF110CRQ, ENCFF419RSJ, ENCFF467UQI, ENCFF500RYU 33274 ENCODE Processing Pipeline ed1684bba1d03a6d92db969ed1a008a7 https://www.encodeproject.org/files/ENCFF410PQD/@@download/ENCFF410PQD.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF500RYU bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF302OZO, ENCFF390ATQ 5924322 ENCODE Processing Pipeline 052f355498512b39faea6df973e48022 https://www.encodeproject.org/files/ENCFF500RYU/@@download/ENCFF500RYU.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF265QXK bed narrowPeak optimal idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF110CRQ, ENCFF419RSJ, ENCFF467UQI, ENCFF500RYU 60234 ENCODE Processing Pipeline c176aa8d570ea5bfe905c412f1534b96 https://www.encodeproject.org/files/ENCFF265QXK/@@download/ENCFF265QXK.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF314RBH bigBed narrowPeak optimal idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF265QXK 168863 ENCODE Processing Pipeline acaddb026748f6f89e6d81ae583ad1aa https://www.encodeproject.org/files/ENCFF314RBH/@@download/ENCFF314RBH.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF494TFV bed narrowPeak conservative idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF225CMV, ENCFF575RVG, ENCFF597WGL 29058 ENCODE Processing Pipeline c4325f3320dcda06b9e1121d4f99f100 https://www.encodeproject.org/files/ENCFF494TFV/@@download/ENCFF494TFV.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF666MVK bigBed narrowPeak conservative idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF494TFV 97742 ENCODE Processing Pipeline 8373d2560f107fe8776fdd983d00f2e7 https://www.encodeproject.org/files/ENCFF666MVK/@@download/ENCFF666MVK.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF806QLF bigBed narrowPeak optimal idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF036YVI 130780 ENCODE Processing Pipeline 564f2698ed65a25444cb445b5c1ae0d6 https://www.encodeproject.org/files/ENCFF806QLF/@@download/ENCFF806QLF.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF036YVI bed narrowPeak optimal idr thresholded peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF225CMV, ENCFF575RVG, ENCFF597WGL 52645 ENCODE Processing Pipeline f353a61ba2e6c83a03f221aa38684c44 https://www.encodeproject.org/files/ENCFF036YVI/@@download/ENCFF036YVI.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF682QTO fastq reads ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF203YAZ 2578187417 Richard Myers, HAIB 96a218cd6de9302af510c3d274e8498f SRA:SRR6212896 https://www.encodeproject.org/files/ENCFF682QTO/@@download/ENCFF682QTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF224JZM/ released antibody characterized with exemption missing control alignments ENCFF203YAZ fastq reads ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF682QTO 2699289678 Richard Myers, HAIB 5377a2d07b1e25b17092e5bded64907e SRA:SRR6212896 https://www.encodeproject.org/files/ENCFF203YAZ/@@download/ENCFF203YAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF151KQH/ released antibody characterized with exemption missing control alignments ENCFF324FZX bam unfiltered alignments ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF203YAZ, ENCFF682QTO, ENCFF807MUK 6293284058 ENCODE Processing Pipeline 5da7a9cd5da833ea62e7d476dd9eed06 https://www.encodeproject.org/files/ENCFF324FZX/@@download/ENCFF324FZX.bam hg19 released antibody characterized with exemption missing control alignments ENCFF734WEC bam unfiltered alignments ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF203YAZ, ENCFF643CGH, ENCFF682QTO 6320054477 ENCODE Processing Pipeline a9c317b6f61f9fb790c532ec152cd541 https://www.encodeproject.org/files/ENCFF734WEC/@@download/ENCFF734WEC.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF855BDE bam alignments ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF203YAZ, ENCFF643CGH, ENCFF682QTO 4531020984 ENCODE Processing Pipeline 4a7099cc1c9ce48ab5f0af71dbeef096 https://www.encodeproject.org/files/ENCFF855BDE/@@download/ENCFF855BDE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF408OZV bam alignments ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF203YAZ, ENCFF682QTO, ENCFF807MUK 4526180642 ENCODE Processing Pipeline 79a3757a976b0e1991c07671d30ddf94 https://www.encodeproject.org/files/ENCFF408OZV/@@download/ENCFF408OZV.bam hg19 released antibody characterized with exemption missing control alignments ENCFF106FOU bigWig signal p-value ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF855BDE 1816184477 ENCODE Processing Pipeline 958df3ed022ec2006f16cbf786a46c28 https://www.encodeproject.org/files/ENCFF106FOU/@@download/ENCFF106FOU.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF353YJE bigWig fold change over control ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF855BDE 1841941371 ENCODE Processing Pipeline 18094bc6afacde687974736bae628f67 https://www.encodeproject.org/files/ENCFF353YJE/@@download/ENCFF353YJE.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF220JFI bed narrowPeak peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF855BDE 6142495 ENCODE Processing Pipeline c396c6984deeabbde44902f1d32a3d1d https://www.encodeproject.org/files/ENCFF220JFI/@@download/ENCFF220JFI.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF434LHU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF904COM 25677 ENCODE Processing Pipeline caa78386b8a8b9d68916ff4f4d25b230 https://www.encodeproject.org/files/ENCFF434LHU/@@download/ENCFF434LHU.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF904COM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF220JFI, ENCFF419RSJ 1771 ENCODE Processing Pipeline f9a805f8e02b10dd630ec46db7418a15 https://www.encodeproject.org/files/ENCFF904COM/@@download/ENCFF904COM.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF006OGD bigBed narrowPeak peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF220JFI 11849930 ENCODE Processing Pipeline 629b2bdc7d4aefb077bec931a549eeda https://www.encodeproject.org/files/ENCFF006OGD/@@download/ENCFF006OGD.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF426ZVM bigWig signal p-value ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF408OZV 1741916655 ENCODE Processing Pipeline c06e5eb1da68c9768676ba751b41bbb9 https://www.encodeproject.org/files/ENCFF426ZVM/@@download/ENCFF426ZVM.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF730SMH bed narrowPeak peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF408OZV 6134577 ENCODE Processing Pipeline 6712d118be7895dc696877572c87883d https://www.encodeproject.org/files/ENCFF730SMH/@@download/ENCFF730SMH.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF403WRV bigBed narrowPeak peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF730SMH 11830326 ENCODE Processing Pipeline 5d8fa9eeb854a1787a996c07d860bc6e https://www.encodeproject.org/files/ENCFF403WRV/@@download/ENCFF403WRV.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF479QKT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF243XHX 17708 ENCODE Processing Pipeline 6f621fe9ee5374d3b5d844f05947aa91 https://www.encodeproject.org/files/ENCFF479QKT/@@download/ENCFF479QKT.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF008LVL bigWig fold change over control ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF408OZV 1840836290 ENCODE Processing Pipeline 7171483d9e58efc733795f896bb0fdf1 https://www.encodeproject.org/files/ENCFF008LVL/@@download/ENCFF008LVL.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF243XHX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF730SMH 1644 ENCODE Processing Pipeline fd7a8b58b5d3168335dedfe70da5efbe https://www.encodeproject.org/files/ENCFF243XHX/@@download/ENCFF243XHX.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF611IJV bam unfiltered alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 100 ENCFF335SYB, ENCFF734FMS, ENCFF807MUK 4702247540 ENCODE Processing Pipeline b670f60e16a34bf799c5395fa8bd36e2 https://www.encodeproject.org/files/ENCFF611IJV/@@download/ENCFF611IJV.bam hg19 released control low read depth, missing genetic modification characterization ENCFF666PDF bam unfiltered alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 100 ENCFF442MPQ, ENCFF677HXI, ENCFF807MUK 4984000479 ENCODE Processing Pipeline f86daccc5031be9cdc0fc5404e17f423 https://www.encodeproject.org/files/ENCFF666PDF/@@download/ENCFF666PDF.bam hg19 released control low read depth, missing genetic modification characterization ENCFF335SYB fastq reads ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF734FMS 2166780455 Michael Snyder, Stanford 87a522019e938c0afd5b0aae0c0e6579 SRA:SRR5112058 https://www.encodeproject.org/files/ENCFF335SYB/@@download/ENCFF335SYB.fastq.gz Illumina HiSeq 2000 /files/ENCFF031XFH/ released control low read depth, missing genetic modification characterization ENCFF734FMS fastq reads ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF335SYB 2139855852 Michael Snyder, Stanford d01db0edd5d9663da80d239dfa085776 SRA:SRR5112058 https://www.encodeproject.org/files/ENCFF734FMS/@@download/ENCFF734FMS.fastq.gz Illumina HiSeq 2000 /files/ENCFF717YHU/ released control low read depth, missing genetic modification characterization ENCFF442MPQ fastq reads ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF677HXI 2301136146 Michael Snyder, Stanford c1d1762778cba7efd038911f63b63810 SRA:SRR5112057 https://www.encodeproject.org/files/ENCFF442MPQ/@@download/ENCFF442MPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF031XFH/ released control low read depth, missing genetic modification characterization ENCFF677HXI fastq reads ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF442MPQ 2248973390 Michael Snyder, Stanford 59cc495afd283be387321c13b5c92ce9 SRA:SRR5112057 https://www.encodeproject.org/files/ENCFF677HXI/@@download/ENCFF677HXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF717YHU/ released control low read depth, missing genetic modification characterization ENCFF578CTB bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 100 ENCFF442MPQ, ENCFF677HXI, ENCFF807MUK 4271614014 ENCODE Processing Pipeline 4e8dbc5dc7ae4247a9e1f46da7d3405d https://www.encodeproject.org/files/ENCFF578CTB/@@download/ENCFF578CTB.bam hg19 released control low read depth, missing genetic modification characterization ENCFF197TMV bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 100 ENCFF335SYB, ENCFF734FMS, ENCFF807MUK 4043923261 ENCODE Processing Pipeline 7fa1c385b5b9fc312a619e0273c61892 https://www.encodeproject.org/files/ENCFF197TMV/@@download/ENCFF197TMV.bam hg19 released control low read depth, missing genetic modification characterization ENCFF970DGK bigWig signal p-value ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF189PKR, ENCFF578CTB 733668920 ENCODE Processing Pipeline 7ceae979df68ff8a6ec28624ec0edcbf https://www.encodeproject.org/files/ENCFF970DGK/@@download/ENCFF970DGK.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF029HEO bigWig signal p-value ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF189PKR, ENCFF197TMV 762262698 ENCODE Processing Pipeline c7cc8c0f3f058d7c42f09b078fb04ce5 https://www.encodeproject.org/files/ENCFF029HEO/@@download/ENCFF029HEO.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF561RXA bigWig signal p-value ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF189PKR, ENCFF197TMV, ENCFF578CTB 721622443 ENCODE Processing Pipeline 333b1ddb89751dad7d6dd585ad39aea5 https://www.encodeproject.org/files/ENCFF561RXA/@@download/ENCFF561RXA.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF158ZSD bigWig fold change over control ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF189PKR, ENCFF578CTB 894833615 ENCODE Processing Pipeline f79a65b237ec773841edf233c94dc2ce https://www.encodeproject.org/files/ENCFF158ZSD/@@download/ENCFF158ZSD.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF048PQD bigWig fold change over control ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF189PKR, ENCFF197TMV, ENCFF578CTB 1409716351 ENCODE Processing Pipeline c55bb1ec6f170e528a1eef4794527c43 https://www.encodeproject.org/files/ENCFF048PQD/@@download/ENCFF048PQD.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF144KKG bigWig fold change over control ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF189PKR, ENCFF197TMV 883405994 ENCODE Processing Pipeline 17bc65567d7c2b1db44942e3ad75bc95 https://www.encodeproject.org/files/ENCFF144KKG/@@download/ENCFF144KKG.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF538FYO bigBed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF777YSR 11168556 ENCODE Processing Pipeline b45a533ce24eb8394e721b47198104df https://www.encodeproject.org/files/ENCFF538FYO/@@download/ENCFF538FYO.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF777YSR bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF189PKR, ENCFF197TMV 5399571 ENCODE Processing Pipeline 2648b73e01a12bf1d770eab481d3b4cd https://www.encodeproject.org/files/ENCFF777YSR/@@download/ENCFF777YSR.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF267PBD bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF189PKR, ENCFF197TMV, ENCFF578CTB 6518597 ENCODE Processing Pipeline 0a4010fb28336840612f4e3a90f0bd36 https://www.encodeproject.org/files/ENCFF267PBD/@@download/ENCFF267PBD.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF508MUL bigBed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF828PUB 11146356 ENCODE Processing Pipeline 8a43ff6398861fb05617ba5cd9602df6 https://www.encodeproject.org/files/ENCFF508MUL/@@download/ENCFF508MUL.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF828PUB bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF189PKR, ENCFF578CTB 5546344 ENCODE Processing Pipeline c47fb2cc45bcf3ff555033405150d4b0 https://www.encodeproject.org/files/ENCFF828PUB/@@download/ENCFF828PUB.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF093SKC bigBed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF267PBD 11159218 ENCODE Processing Pipeline b7c9693fef1d3160ad0d6c4585868406 https://www.encodeproject.org/files/ENCFF093SKC/@@download/ENCFF093SKC.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF363TIR bam unfiltered alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 100 ENCFF335SYB, ENCFF643CGH, ENCFF734FMS 4709813574 ENCODE Processing Pipeline 2a18d6ea7dac32c64b332219515445bd https://www.encodeproject.org/files/ENCFF363TIR/@@download/ENCFF363TIR.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF192VLT bam unfiltered alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 100 ENCFF442MPQ, ENCFF643CGH, ENCFF677HXI 4992998410 ENCODE Processing Pipeline 2897e73a3f8e53e46fbf81bbb7f169b1 https://www.encodeproject.org/files/ENCFF192VLT/@@download/ENCFF192VLT.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF949ENV bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 100 ENCFF335SYB, ENCFF643CGH, ENCFF734FMS 4045558156 ENCODE Processing Pipeline 3dd7575c03c8e515754de16ec407f82f https://www.encodeproject.org/files/ENCFF949ENV/@@download/ENCFF949ENV.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF280AEF bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 100 ENCFF442MPQ, ENCFF643CGH, ENCFF677HXI 4273869269 ENCODE Processing Pipeline 7cbf1e4c6090e0492436eb8595abe6ab https://www.encodeproject.org/files/ENCFF280AEF/@@download/ENCFF280AEF.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF593VMC bigWig signal p-value ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF002WSA, ENCFF280AEF 731151513 ENCODE Processing Pipeline ac243b6c9da6c735bdc0da894e7d6a81 https://www.encodeproject.org/files/ENCFF593VMC/@@download/ENCFF593VMC.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF336BWO bigWig signal p-value ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF002WSA, ENCFF949ENV 734676768 ENCODE Processing Pipeline 5778b96ff6b5aa90866759e6b3ac8bdb https://www.encodeproject.org/files/ENCFF336BWO/@@download/ENCFF336BWO.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF697YIB bigWig signal p-value ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF002WSA, ENCFF280AEF, ENCFF949ENV 726176145 ENCODE Processing Pipeline 118f31d817874ab43df807f3d0f5c3b3 https://www.encodeproject.org/files/ENCFF697YIB/@@download/ENCFF697YIB.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF988ULJ bigWig fold change over control ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF002WSA, ENCFF280AEF 883868191 ENCODE Processing Pipeline 7964ae951398cb83a19cdce275a7b221 https://www.encodeproject.org/files/ENCFF988ULJ/@@download/ENCFF988ULJ.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF653TNV bigWig fold change over control ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF002WSA, ENCFF949ENV 865440574 ENCODE Processing Pipeline 485b7431ab5b741a67197e37a6136673 https://www.encodeproject.org/files/ENCFF653TNV/@@download/ENCFF653TNV.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF923VES bigWig fold change over control ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF002WSA, ENCFF280AEF, ENCFF949ENV 1424819527 ENCODE Processing Pipeline 2205c8722743dc62c60f3570f75a06f1 https://www.encodeproject.org/files/ENCFF923VES/@@download/ENCFF923VES.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF678UKK bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF002WSA, ENCFF280AEF, ENCFF949ENV 6350185 ENCODE Processing Pipeline 2551835d3f191855d8adae18b621e5e3 https://www.encodeproject.org/files/ENCFF678UKK/@@download/ENCFF678UKK.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF449DVG bigBed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF808YPC 11096184 ENCODE Processing Pipeline bfa15a3e0880f62e448c1e2623bffdc2 https://www.encodeproject.org/files/ENCFF449DVG/@@download/ENCFF449DVG.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF564BED bigBed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF678UKK 11172479 ENCODE Processing Pipeline 18a2d31a1e2f42a87c6c44694862f138 https://www.encodeproject.org/files/ENCFF564BED/@@download/ENCFF564BED.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF808YPC bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF002WSA, ENCFF280AEF 5346386 ENCODE Processing Pipeline d12693d9d3fcbc3cdeb91c3d7afef09a https://www.encodeproject.org/files/ENCFF808YPC/@@download/ENCFF808YPC.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF622SEO bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF002WSA, ENCFF949ENV 5209718 ENCODE Processing Pipeline a95a33862ee562b6b5966f64bd03b457 https://www.encodeproject.org/files/ENCFF622SEO/@@download/ENCFF622SEO.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF380IBP bigBed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF622SEO 11114680 ENCODE Processing Pipeline acfb101988107a46cc44b06e68b23142 https://www.encodeproject.org/files/ENCFF380IBP/@@download/ENCFF380IBP.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF895ZGS bed narrowPeak conservative idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF622SEO, ENCFF678UKK, ENCFF808YPC 84839 ENCODE Processing Pipeline 4457384fa6689d20db3e4524f7bc804e https://www.encodeproject.org/files/ENCFF895ZGS/@@download/ENCFF895ZGS.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF716MRR bigBed narrowPeak conservative idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF895ZGS 188752 ENCODE Processing Pipeline 8d5a35a8b3ddb3f03809a0054667d570 https://www.encodeproject.org/files/ENCFF716MRR/@@download/ENCFF716MRR.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF563LGJ bed narrowPeak optimal idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF622SEO, ENCFF678UKK, ENCFF808YPC 122484 ENCODE Processing Pipeline 4a765afba563849acd43fff951aeb893 https://www.encodeproject.org/files/ENCFF563LGJ/@@download/ENCFF563LGJ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF133ALW bigBed narrowPeak optimal idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF563LGJ 283300 ENCODE Processing Pipeline 89ca7039627c8da47a6747dc94bd6ef7 https://www.encodeproject.org/files/ENCFF133ALW/@@download/ENCFF133ALW.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF361IAV bigBed narrowPeak conservative idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF006PAK 165313 ENCODE Processing Pipeline 22ba3fd52edf9137748c0cd9104746e9 https://www.encodeproject.org/files/ENCFF361IAV/@@download/ENCFF361IAV.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF006PAK bed narrowPeak conservative idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF267PBD, ENCFF777YSR, ENCFF828PUB 69474 ENCODE Processing Pipeline ababe80d1949f5ff877d8575537b71e1 https://www.encodeproject.org/files/ENCFF006PAK/@@download/ENCFF006PAK.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF619BDC bed narrowPeak optimal idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF267PBD, ENCFF777YSR, ENCFF828PUB 102575 ENCODE Processing Pipeline 3f2a8bb473746d1fb1310641b85ce509 https://www.encodeproject.org/files/ENCFF619BDC/@@download/ENCFF619BDC.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF537TUO bigBed narrowPeak optimal idr thresholded peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF619BDC 207777 ENCODE Processing Pipeline faa667b1c9107d29ca03b54d525c1bfd https://www.encodeproject.org/files/ENCFF537TUO/@@download/ENCFF537TUO.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF434ISC fastq reads ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 1 ENCFF105BAY 6181903230 Michael Snyder, Stanford 38e62f950ce79eea002874e4791fd4bb SRA:SRR6213948 https://www.encodeproject.org/files/ENCFF434ISC/@@download/ENCFF434ISC.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity ENCFF194JCS fastq reads ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 1 100 paired-ended 1 ENCFF831HED 3172935971 Michael Snyder, Stanford 7c9b99e194fc7a46cd5feac3ae8bf7dc SRA:SRR6213947 https://www.encodeproject.org/files/ENCFF194JCS/@@download/ENCFF194JCS.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity ENCFF831HED fastq reads ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 1 100 paired-ended 2 ENCFF194JCS 3480487880 Michael Snyder, Stanford c9d47d7fa1ce583edaa400eaa1a0d76f SRA:SRR6213947 https://www.encodeproject.org/files/ENCFF831HED/@@download/ENCFF831HED.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity ENCFF105BAY fastq reads ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 2 ENCFF434ISC 6669651770 Michael Snyder, Stanford 50d7a0ce73a934ab536c44f9bfa321a8 SRA:SRR6213948 https://www.encodeproject.org/files/ENCFF105BAY/@@download/ENCFF105BAY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity ENCFF256LJD bam unfiltered alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 100 ENCFF194JCS, ENCFF807MUK, ENCFF831HED 6032953602 ENCODE Processing Pipeline 4f2c8748994c80bcfa7340b565fb5e01 https://www.encodeproject.org/files/ENCFF256LJD/@@download/ENCFF256LJD.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF099AAR bam unfiltered alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 100 ENCFF194JCS, ENCFF643CGH, ENCFF831HED 6035154111 ENCODE Processing Pipeline f41db44dfe0865e56d33a999f1c0b1dd https://www.encodeproject.org/files/ENCFF099AAR/@@download/ENCFF099AAR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF207ILO bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 100 ENCFF194JCS, ENCFF807MUK, ENCFF831HED 3992877850 ENCODE Processing Pipeline 8d471aceeae5c01ab556eabb8bce62f4 https://www.encodeproject.org/files/ENCFF207ILO/@@download/ENCFF207ILO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF066JMV bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 100 ENCFF194JCS, ENCFF643CGH, ENCFF831HED 3995880451 ENCODE Processing Pipeline 602d8339a1c636309d54d92804819e49 https://www.encodeproject.org/files/ENCFF066JMV/@@download/ENCFF066JMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF796GXD bam unfiltered alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 100 ENCFF105BAY, ENCFF434ISC, ENCFF643CGH 11250676388 ENCODE Processing Pipeline 0b79b1bbc0b6f44b1f03a1e68385858f https://www.encodeproject.org/files/ENCFF796GXD/@@download/ENCFF796GXD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF663CTR bam unfiltered alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 100 ENCFF105BAY, ENCFF434ISC, ENCFF807MUK 11244444056 ENCODE Processing Pipeline 5b9d5588d163c72eef5c2a0391d54a09 https://www.encodeproject.org/files/ENCFF663CTR/@@download/ENCFF663CTR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF981ZOJ bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 100 ENCFF105BAY, ENCFF434ISC, ENCFF807MUK 8290086838 ENCODE Processing Pipeline 9625cc42ba8c1be17db40749b9cddfaa https://www.encodeproject.org/files/ENCFF981ZOJ/@@download/ENCFF981ZOJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF330XAC bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 100 ENCFF105BAY, ENCFF434ISC, ENCFF643CGH 8299455783 ENCODE Processing Pipeline e88564eaf6627e2724a5c6bfa6e93fde https://www.encodeproject.org/files/ENCFF330XAC/@@download/ENCFF330XAC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF326EWY bigWig signal p-value ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF330XAC, ENCFF712WXB, ENCFF790TAN 2365941813 ENCODE Processing Pipeline 099c6cff8de87a1326d2254af3cad56f https://www.encodeproject.org/files/ENCFF326EWY/@@download/ENCFF326EWY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF932CDT bigWig signal p-value ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF066JMV, ENCFF712WXB 1335004475 ENCODE Processing Pipeline 9b866ccee5cfff73f0b4c0c13163317a https://www.encodeproject.org/files/ENCFF932CDT/@@download/ENCFF932CDT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF090HZQ bigWig signal p-value ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF066JMV, ENCFF330XAC, ENCFF712WXB, ENCFF790TAN 2364424118 ENCODE Processing Pipeline 5c62f29ae987e2258d714e8229a9c2d2 https://www.encodeproject.org/files/ENCFF090HZQ/@@download/ENCFF090HZQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF165THZ bigWig fold change over control ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF330XAC, ENCFF712WXB, ENCFF790TAN 2499884362 ENCODE Processing Pipeline 2bc524f6ba3dfbe8f05922c5273fb310 https://www.encodeproject.org/files/ENCFF165THZ/@@download/ENCFF165THZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF930DHM bigWig fold change over control ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF066JMV, ENCFF712WXB 1417902474 ENCODE Processing Pipeline 6ffc4aa158da73717e4ccfd547d3c9ad https://www.encodeproject.org/files/ENCFF930DHM/@@download/ENCFF930DHM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF432FYS bigWig fold change over control ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF066JMV, ENCFF330XAC, ENCFF712WXB, ENCFF790TAN 2856334831 ENCODE Processing Pipeline ab87caa8cf27fc1044896a789c5a93bf https://www.encodeproject.org/files/ENCFF432FYS/@@download/ENCFF432FYS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF557SFL bed narrowPeak conservative idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF299RHL, ENCFF419RSJ, ENCFF694KSM, ENCFF935HPA 612630 ENCODE Processing Pipeline 6377fbfb5a1139a8f040542e92fca5e3 https://www.encodeproject.org/files/ENCFF557SFL/@@download/ENCFF557SFL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF296PRC bigBed narrowPeak conservative idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF557SFL 1393885 ENCODE Processing Pipeline 53897dfbf6e9ee64de85d68d0cde5534 https://www.encodeproject.org/files/ENCFF296PRC/@@download/ENCFF296PRC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF525MPI bed narrowPeak optimal idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF299RHL, ENCFF419RSJ, ENCFF694KSM, ENCFF935HPA 616163 ENCODE Processing Pipeline 771e3875b5bd6a6f256953a6fad4660a https://www.encodeproject.org/files/ENCFF525MPI/@@download/ENCFF525MPI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF299RHL bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF330XAC, ENCFF712WXB, ENCFF790TAN 7262176 ENCODE Processing Pipeline ac489291e1e4ef9a908078a1dd1817f6 https://www.encodeproject.org/files/ENCFF299RHL/@@download/ENCFF299RHL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF829KGK bigBed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF935HPA 13123417 ENCODE Processing Pipeline 99d4cfd73cdb0325114c28753057ccf4 https://www.encodeproject.org/files/ENCFF829KGK/@@download/ENCFF829KGK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF694KSM bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF066JMV, ENCFF712WXB 7206316 ENCODE Processing Pipeline f330c0cc918766b8bd4d09d10cf83663 https://www.encodeproject.org/files/ENCFF694KSM/@@download/ENCFF694KSM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF852CRJ bigBed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF694KSM 13012642 ENCODE Processing Pipeline b99a817fb7c5d9321ed449408739a7dc https://www.encodeproject.org/files/ENCFF852CRJ/@@download/ENCFF852CRJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF935HPA bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF066JMV, ENCFF330XAC, ENCFF712WXB, ENCFF790TAN 7310470 ENCODE Processing Pipeline 6cbcb5d2ee060f8423e597be99a5e148 https://www.encodeproject.org/files/ENCFF935HPA/@@download/ENCFF935HPA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF045PDJ bigBed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF299RHL 13182496 ENCODE Processing Pipeline a47b59c35ff2a80e0d2c86d57cebe19a https://www.encodeproject.org/files/ENCFF045PDJ/@@download/ENCFF045PDJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF397DQH bigBed narrowPeak optimal idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF525MPI 1417197 ENCODE Processing Pipeline bc8daa5701d18bfd8a60d23ab0f2a79c https://www.encodeproject.org/files/ENCFF397DQH/@@download/ENCFF397DQH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF905MKI bigWig signal p-value ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF981ZOJ 2044311460 ENCODE Processing Pipeline edd582244d9223bcbe0a8eccbf18b644 https://www.encodeproject.org/files/ENCFF905MKI/@@download/ENCFF905MKI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF987ZDX bigWig signal p-value ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF207ILO, ENCFF834TUP 1113417336 ENCODE Processing Pipeline 40c1604fb4d93b67cea21ab6b4e3e4b4 https://www.encodeproject.org/files/ENCFF987ZDX/@@download/ENCFF987ZDX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF683RIR bigWig signal p-value ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF160VXC, ENCFF207ILO, ENCFF834TUP, ENCFF981ZOJ 2361045181 ENCODE Processing Pipeline 8e1f03bcbda6c5ccc1e16407b46ead12 https://www.encodeproject.org/files/ENCFF683RIR/@@download/ENCFF683RIR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF932XMO bigWig fold change over control ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF160VXC, ENCFF207ILO, ENCFF834TUP, ENCFF981ZOJ 2851432185 ENCODE Processing Pipeline c2f54135df1c64001b7e2b8a85e3df0a https://www.encodeproject.org/files/ENCFF932XMO/@@download/ENCFF932XMO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF189YFO bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF207ILO, ENCFF834TUP 7142686 ENCODE Processing Pipeline 5fba234db01600332db1a33dc36a687d https://www.encodeproject.org/files/ENCFF189YFO/@@download/ENCFF189YFO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF198PUN bigBed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF230QTS 13165981 ENCODE Processing Pipeline 139899282ec346ae42ede40e578c5f1e https://www.encodeproject.org/files/ENCFF198PUN/@@download/ENCFF198PUN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF388VRP bigWig fold change over control ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF981ZOJ 2472094513 ENCODE Processing Pipeline 07d04081230b82ecd0b823bd706dbd90 https://www.encodeproject.org/files/ENCFF388VRP/@@download/ENCFF388VRP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF390CDI bigBed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF189YFO 12939662 ENCODE Processing Pipeline 276336176bd3ff2d7d1109b68f9c047d https://www.encodeproject.org/files/ENCFF390CDI/@@download/ENCFF390CDI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF476TYF bigWig fold change over control ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF207ILO, ENCFF834TUP 1409752517 ENCODE Processing Pipeline 53bcae607cf7345ee420d8067b11a232 https://www.encodeproject.org/files/ENCFF476TYF/@@download/ENCFF476TYF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF230QTS bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF981ZOJ 7251235 ENCODE Processing Pipeline ac03467c13d09b0c060ac98caf91fb99 https://www.encodeproject.org/files/ENCFF230QTS/@@download/ENCFF230QTS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF207RUE bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF160VXC, ENCFF207ILO, ENCFF834TUP, ENCFF981ZOJ 7309769 ENCODE Processing Pipeline 98bfaf46f1594d56e6b8d44ada364991 https://www.encodeproject.org/files/ENCFF207RUE/@@download/ENCFF207RUE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF670ZCR bed narrowPeak optimal idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF189YFO, ENCFF207RUE, ENCFF230QTS 626753 ENCODE Processing Pipeline 3572fd53982de4f442b944272468c615 https://www.encodeproject.org/files/ENCFF670ZCR/@@download/ENCFF670ZCR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF287WIC bigBed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF207RUE 13120133 ENCODE Processing Pipeline 584a04562b2863d9854420ce5e878ada https://www.encodeproject.org/files/ENCFF287WIC/@@download/ENCFF287WIC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF582HCK bed narrowPeak conservative idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF189YFO, ENCFF207RUE, ENCFF230QTS 612927 ENCODE Processing Pipeline e7f77bd3f6e2275f94b8e6e7d1c54a62 https://www.encodeproject.org/files/ENCFF582HCK/@@download/ENCFF582HCK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF186UJB bigBed narrowPeak conservative idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF582HCK 1390402 ENCODE Processing Pipeline 272422993686f63832939459cf9dea09 https://www.encodeproject.org/files/ENCFF186UJB/@@download/ENCFF186UJB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF838CNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF670ZCR 1429382 ENCODE Processing Pipeline a950a50937010ecdff81da00928ea3b9 https://www.encodeproject.org/files/ENCFF838CNQ/@@download/ENCFF838CNQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF269TVU fastq reads ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 2 ENCFF687SPD 1940447078 Richard Myers, HAIB f01412b4192aa6fa91e50b4e420d62e4 SRA:SRR6214036 https://www.encodeproject.org/files/ENCFF269TVU/@@download/ENCFF269TVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF102SYP/ released antibody characterized with exemption ENCFF687SPD fastq reads ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 1 ENCFF269TVU 1888817942 Richard Myers, HAIB bae293a922075c73644db67a863b09ea SRA:SRR6214036 https://www.encodeproject.org/files/ENCFF687SPD/@@download/ENCFF687SPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF090EFT/ released antibody characterized with exemption ENCFF602TRG bam alignments ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF269TVU, ENCFF643CGH, ENCFF687SPD 2990563873 ENCODE Processing Pipeline 71c6a4ab979daf50ab9c81f4a447886d https://www.encodeproject.org/files/ENCFF602TRG/@@download/ENCFF602TRG.bam GRCh38 released antibody characterized with exemption ENCFF152TJI bam unfiltered alignments ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF269TVU, ENCFF643CGH, ENCFF687SPD 4309910018 ENCODE Processing Pipeline 6b33c42b2bd7c9b648d3ffa54c08f117 https://www.encodeproject.org/files/ENCFF152TJI/@@download/ENCFF152TJI.bam GRCh38 released antibody characterized with exemption ENCFF256ERR bam unfiltered alignments ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF269TVU, ENCFF687SPD, ENCFF807MUK 4302915198 ENCODE Processing Pipeline d46e3f22f7f6544c517b8dafcb2ab348 https://www.encodeproject.org/files/ENCFF256ERR/@@download/ENCFF256ERR.bam hg19 released antibody characterized with exemption ENCFF014UOC bam alignments ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF269TVU, ENCFF687SPD, ENCFF807MUK 2990707165 ENCODE Processing Pipeline decf2ae65ab6a3d1a36301128d52dd84 https://www.encodeproject.org/files/ENCFF014UOC/@@download/ENCFF014UOC.bam hg19 released antibody characterized with exemption ENCFF987IKB bed narrowPeak peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF240ZFM, ENCFF602TRG 7092557 ENCODE Processing Pipeline 9592b7b3ce91ead0eeb0acaaee127c13 https://www.encodeproject.org/files/ENCFF987IKB/@@download/ENCFF987IKB.bed.gz GRCh38 released antibody characterized with exemption ENCFF735MBP bigWig signal p-value ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF240ZFM, ENCFF602TRG 977004329 ENCODE Processing Pipeline 3a410baabd66ea4c4c86f178135b1e61 https://www.encodeproject.org/files/ENCFF735MBP/@@download/ENCFF735MBP.bigWig GRCh38 released antibody characterized with exemption ENCFF119HZF bigBed narrowPeak peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF987IKB 13025419 ENCODE Processing Pipeline 7dd43956faaa371c7b1018035560b9ef https://www.encodeproject.org/files/ENCFF119HZF/@@download/ENCFF119HZF.bigBed GRCh38 released antibody characterized with exemption ENCFF640OPA bigWig fold change over control ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF240ZFM, ENCFF602TRG 851885257 ENCODE Processing Pipeline 522e3b115b309c58e1cbdf4937f529a5 https://www.encodeproject.org/files/ENCFF640OPA/@@download/ENCFF640OPA.bigWig GRCh38 released antibody characterized with exemption ENCFF549FZH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF419RSJ, ENCFF987IKB 896655 ENCODE Processing Pipeline 14c79b8a8b0dbad197eaf50dc557dea8 https://www.encodeproject.org/files/ENCFF549FZH/@@download/ENCFF549FZH.bed.gz GRCh38 released antibody characterized with exemption ENCFF922WUM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF549FZH 1704342 ENCODE Processing Pipeline d3e4a03f3f76a71a220e3e0b1d98054b https://www.encodeproject.org/files/ENCFF922WUM/@@download/ENCFF922WUM.bigBed GRCh38 released antibody characterized with exemption ENCFF157TQM bigWig signal p-value ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF014UOC, ENCFF300OHV 1060754693 ENCODE Processing Pipeline 516e221aea77e4b653a8b087dd4390a2 https://www.encodeproject.org/files/ENCFF157TQM/@@download/ENCFF157TQM.bigWig hg19 released antibody characterized with exemption ENCFF233SVA bed narrowPeak peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF014UOC, ENCFF300OHV 7101031 ENCODE Processing Pipeline 2d49e6634181766e27cdca2f505122b9 https://www.encodeproject.org/files/ENCFF233SVA/@@download/ENCFF233SVA.bed.gz hg19 released antibody characterized with exemption ENCFF844VIL bigBed narrowPeak peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF233SVA 13021346 ENCODE Processing Pipeline 34c8f8b8af5bc02bd87e6f9bcbd4b916 https://www.encodeproject.org/files/ENCFF844VIL/@@download/ENCFF844VIL.bigBed hg19 released antibody characterized with exemption ENCFF392ZZG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF007BBM 1704071 ENCODE Processing Pipeline 344c51fc28818d02b54ab46271c7f172 https://www.encodeproject.org/files/ENCFF392ZZG/@@download/ENCFF392ZZG.bigBed hg19 released antibody characterized with exemption ENCFF007BBM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF001TDO, ENCFF233SVA 897562 ENCODE Processing Pipeline e4116ff53e7533f362f2e6696cb67936 https://www.encodeproject.org/files/ENCFF007BBM/@@download/ENCFF007BBM.bed.gz hg19 released antibody characterized with exemption ENCFF547WRK bigWig fold change over control ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF014UOC, ENCFF300OHV 864858969 ENCODE Processing Pipeline a485e4617ec833a65648d90dba15c077 https://www.encodeproject.org/files/ENCFF547WRK/@@download/ENCFF547WRK.bigWig hg19 released antibody characterized with exemption ENCFF240XVG bam unfiltered alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 100 ENCFF615CRG, ENCFF718HUU, ENCFF807MUK 4265592793 ENCODE Processing Pipeline 7ff5500974cbc3441ed2ff2dbf43ee8f https://www.encodeproject.org/files/ENCFF240XVG/@@download/ENCFF240XVG.bam hg19 released low read depth, missing genetic modification characterization ENCFF679LJM bam unfiltered alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 100 ENCFF157JAL, ENCFF807MUK, ENCFF977AJQ 4233991659 ENCODE Processing Pipeline 1576f65f81e890855d1544892e465f90 https://www.encodeproject.org/files/ENCFF679LJM/@@download/ENCFF679LJM.bam hg19 released low read depth, missing genetic modification characterization ENCFF157JAL fastq reads ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF977AJQ 1930667486 Michael Snyder, Stanford b1d58db82a0bba168e6f238a9e7ea365 SRA:SRR5111134 https://www.encodeproject.org/files/ENCFF157JAL/@@download/ENCFF157JAL.fastq.gz Illumina HiSeq 2000 /files/ENCFF746XJG/ released low read depth, missing genetic modification characterization ENCFF718HUU fastq reads ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF615CRG 1786772171 Michael Snyder, Stanford 752e737305f19b2879bffd1bcc10087c SRA:SRR5111133 https://www.encodeproject.org/files/ENCFF718HUU/@@download/ENCFF718HUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF338LYQ/ released low read depth, missing genetic modification characterization ENCFF615CRG fastq reads ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF718HUU 1899709605 Michael Snyder, Stanford 10079ff5c9f5ce1a12f1d8729db1f18c SRA:SRR5111133 https://www.encodeproject.org/files/ENCFF615CRG/@@download/ENCFF615CRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF746XJG/ released low read depth, missing genetic modification characterization ENCFF977AJQ fastq reads ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF157JAL 1847320328 Michael Snyder, Stanford c7fbb69322bbfbc3ad2f9b2df86fe08e SRA:SRR5111134 https://www.encodeproject.org/files/ENCFF977AJQ/@@download/ENCFF977AJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF338LYQ/ released low read depth, missing genetic modification characterization ENCFF807NZJ bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 100 ENCFF157JAL, ENCFF807MUK, ENCFF977AJQ 3535194946 ENCODE Processing Pipeline 63c19dfad9fabfb625c53ea0c780e26a https://www.encodeproject.org/files/ENCFF807NZJ/@@download/ENCFF807NZJ.bam hg19 released low read depth, missing genetic modification characterization ENCFF767NHP bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 100 ENCFF615CRG, ENCFF718HUU, ENCFF807MUK 3200739042 ENCODE Processing Pipeline 7eb61a8981023c5a4e6d871e4bac8964 https://www.encodeproject.org/files/ENCFF767NHP/@@download/ENCFF767NHP.bam hg19 released low read depth, missing genetic modification characterization ENCFF833RIU bigWig signal p-value ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF099DHX, ENCFF807NZJ 917546953 ENCODE Processing Pipeline cecfb9f75b4959e7be7d37f789e5ccbd https://www.encodeproject.org/files/ENCFF833RIU/@@download/ENCFF833RIU.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF234PPM bigWig signal p-value ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF099DHX, ENCFF767NHP, ENCFF807NZJ 1090797515 ENCODE Processing Pipeline bc8cb233bc66c5bc78427a53d954be41 https://www.encodeproject.org/files/ENCFF234PPM/@@download/ENCFF234PPM.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF432FMT bigWig signal p-value ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF099DHX, ENCFF767NHP 749623839 ENCODE Processing Pipeline b8ae30755b6571d43f4bdae5a9bb53c0 https://www.encodeproject.org/files/ENCFF432FMT/@@download/ENCFF432FMT.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF830YTF bigWig fold change over control ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF099DHX, ENCFF807NZJ 907517047 ENCODE Processing Pipeline 6325535bf1211fbb11172f28a2728aae https://www.encodeproject.org/files/ENCFF830YTF/@@download/ENCFF830YTF.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF154UHN bigWig fold change over control ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF099DHX, ENCFF767NHP 824290142 ENCODE Processing Pipeline 7058ffd9bc7907168dd0e689141b6517 https://www.encodeproject.org/files/ENCFF154UHN/@@download/ENCFF154UHN.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF350TWP bigWig fold change over control ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF099DHX, ENCFF767NHP, ENCFF807NZJ 1330941591 ENCODE Processing Pipeline 5263396cdae274cd4d8a04e2b2531fae https://www.encodeproject.org/files/ENCFF350TWP/@@download/ENCFF350TWP.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF035UJY bigBed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF710KBI 13307544 ENCODE Processing Pipeline 68fc316d475d96a54dc48d26b710ece3 https://www.encodeproject.org/files/ENCFF035UJY/@@download/ENCFF035UJY.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF710KBI bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF099DHX, ENCFF807NZJ 6603746 ENCODE Processing Pipeline 5c96a10199f866ef8d8ff81060efc315 https://www.encodeproject.org/files/ENCFF710KBI/@@download/ENCFF710KBI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF670KBE bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF099DHX, ENCFF767NHP 6408804 ENCODE Processing Pipeline e30b7c45b6616618875246c074065c8f https://www.encodeproject.org/files/ENCFF670KBE/@@download/ENCFF670KBE.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF989QFY bigBed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF670KBE 13363638 ENCODE Processing Pipeline 26ffeae9540980f6cae3564b35ec42ba https://www.encodeproject.org/files/ENCFF989QFY/@@download/ENCFF989QFY.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF694BDZ bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF099DHX, ENCFF767NHP, ENCFF807NZJ 7101195 ENCODE Processing Pipeline af90e22bf4cff8c3624eb3d60fcd0789 https://www.encodeproject.org/files/ENCFF694BDZ/@@download/ENCFF694BDZ.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF523OXF bigBed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF694BDZ 13180767 ENCODE Processing Pipeline 5e8b19404887773dc086150e0b92eeb6 https://www.encodeproject.org/files/ENCFF523OXF/@@download/ENCFF523OXF.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF524RZA bam unfiltered alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 100 ENCFF615CRG, ENCFF643CGH, ENCFF718HUU 4274950782 ENCODE Processing Pipeline f1867efa0e3f450ce2c274494609857f https://www.encodeproject.org/files/ENCFF524RZA/@@download/ENCFF524RZA.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF561BHX bam unfiltered alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 100 ENCFF157JAL, ENCFF643CGH, ENCFF977AJQ 4240152821 ENCODE Processing Pipeline 0fe131fce742d35a19a8fa53e4914544 https://www.encodeproject.org/files/ENCFF561BHX/@@download/ENCFF561BHX.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF396AXY bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 100 ENCFF615CRG, ENCFF643CGH, ENCFF718HUU 3203536114 ENCODE Processing Pipeline a3d4e75e42a9b5b3c9d87a651404bcf9 https://www.encodeproject.org/files/ENCFF396AXY/@@download/ENCFF396AXY.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF391BBO bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 100 ENCFF157JAL, ENCFF643CGH, ENCFF977AJQ 3537540672 ENCODE Processing Pipeline 37d2700dfe277ecd4fe427b274655f16 https://www.encodeproject.org/files/ENCFF391BBO/@@download/ENCFF391BBO.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF591LLI bigWig signal p-value ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF343UNB, ENCFF391BBO 803593691 ENCODE Processing Pipeline 60a0b45477ec2fb4418ac6edce314307 https://www.encodeproject.org/files/ENCFF591LLI/@@download/ENCFF591LLI.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF065LAU bigWig signal p-value ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF343UNB, ENCFF396AXY 868766286 ENCODE Processing Pipeline 82aea4f6463a0a66f955d55a9289ce42 https://www.encodeproject.org/files/ENCFF065LAU/@@download/ENCFF065LAU.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF932PAM bigWig signal p-value ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF343UNB, ENCFF391BBO, ENCFF396AXY 1086436720 ENCODE Processing Pipeline ae2fcacda33ae588cac78f1947cd32b0 https://www.encodeproject.org/files/ENCFF932PAM/@@download/ENCFF932PAM.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF582YEI bigWig fold change over control ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF343UNB, ENCFF391BBO 890928658 ENCODE Processing Pipeline 9f02363987fbc487e0bd39965166bfcf https://www.encodeproject.org/files/ENCFF582YEI/@@download/ENCFF582YEI.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF098HID bigWig fold change over control ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF343UNB, ENCFF396AXY 813471340 ENCODE Processing Pipeline 689009a92e665dbc02cd2ea8cd93ce54 https://www.encodeproject.org/files/ENCFF098HID/@@download/ENCFF098HID.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF134JNY bigWig fold change over control ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF343UNB, ENCFF391BBO, ENCFF396AXY 1326906356 ENCODE Processing Pipeline 0751cae2dbb1b6a631d98155bdd2e98d https://www.encodeproject.org/files/ENCFF134JNY/@@download/ENCFF134JNY.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF789XDM bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF343UNB, ENCFF396AXY 6251232 ENCODE Processing Pipeline 844ca49edf86a942363064a8918b134c https://www.encodeproject.org/files/ENCFF789XDM/@@download/ENCFF789XDM.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF189PHJ bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF343UNB, ENCFF391BBO 6474392 ENCODE Processing Pipeline 55d7ce51df381dd813b7132ca6656014 https://www.encodeproject.org/files/ENCFF189PHJ/@@download/ENCFF189PHJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF065BOS bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF343UNB, ENCFF391BBO, ENCFF396AXY 7049991 ENCODE Processing Pipeline b76ace1ce3215e700684ab44cf688214 https://www.encodeproject.org/files/ENCFF065BOS/@@download/ENCFF065BOS.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF910LBV bigBed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF189PHJ 13321281 ENCODE Processing Pipeline fab4e69e4954204d05c65dc47ee6ec47 https://www.encodeproject.org/files/ENCFF910LBV/@@download/ENCFF910LBV.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF979GJQ bigBed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF789XDM 13366181 ENCODE Processing Pipeline 837a31ecbc6ee4e8e562f7d21c87d8e4 https://www.encodeproject.org/files/ENCFF979GJQ/@@download/ENCFF979GJQ.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF430JDL bigBed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF065BOS 13198460 ENCODE Processing Pipeline 4fb6ec9ab89b9d4457458748672474ad https://www.encodeproject.org/files/ENCFF430JDL/@@download/ENCFF430JDL.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF805MFJ bigBed narrowPeak conservative idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF400JHH 543355 ENCODE Processing Pipeline f50bad43ced0901801661b2cf15b495b https://www.encodeproject.org/files/ENCFF805MFJ/@@download/ENCFF805MFJ.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF400JHH bed narrowPeak conservative idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF065BOS, ENCFF189PHJ, ENCFF419RSJ, ENCFF789XDM 237619 ENCODE Processing Pipeline 45fedfcfc2106230520282d0e6dc2808 https://www.encodeproject.org/files/ENCFF400JHH/@@download/ENCFF400JHH.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF205IFX bed narrowPeak optimal idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF065BOS, ENCFF189PHJ, ENCFF419RSJ, ENCFF789XDM 266097 ENCODE Processing Pipeline 6fd62fd2b04c80cb9fbed279e5b2a0a1 https://www.encodeproject.org/files/ENCFF205IFX/@@download/ENCFF205IFX.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF441EBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF205IFX 591409 ENCODE Processing Pipeline 500aa9c1ff96b7f92dc0ca2b40bc2b47 https://www.encodeproject.org/files/ENCFF441EBQ/@@download/ENCFF441EBQ.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF048DTR bed narrowPeak conservative idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF670KBE, ENCFF694BDZ, ENCFF710KBI 196845 ENCODE Processing Pipeline 0f056a0878f013af157453cb04729afc https://www.encodeproject.org/files/ENCFF048DTR/@@download/ENCFF048DTR.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF545DAF bed narrowPeak optimal idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF670KBE, ENCFF694BDZ, ENCFF710KBI 243151 ENCODE Processing Pipeline 2d74e845180c2708a1b8a2f4ba901591 https://www.encodeproject.org/files/ENCFF545DAF/@@download/ENCFF545DAF.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF989HLP bigBed narrowPeak conservative idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF048DTR 389043 ENCODE Processing Pipeline 6016fb3a576a6d2ea930931c43f316b0 https://www.encodeproject.org/files/ENCFF989HLP/@@download/ENCFF989HLP.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF271WXD bigBed narrowPeak optimal idr thresholded peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF545DAF 450441 ENCODE Processing Pipeline 9ba52fa22c7b27d1ba1ad23bda89b085 https://www.encodeproject.org/files/ENCFF271WXD/@@download/ENCFF271WXD.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF349MIY fastq reads ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 1 100 paired-ended 2 ENCFF017IMJ 2075872266 Michael Snyder, Stanford f7396c330854dc664f2e27848684dd6a SRA:SRR6214159 https://www.encodeproject.org/files/ENCFF349MIY/@@download/ENCFF349MIY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption ENCFF920GYM fastq reads ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 1 100 paired-ended 1 ENCFF171QIU 2575463643 Michael Snyder, Stanford 11a1da9016da79926701c9624259f9e0 SRA:SRR6214160 https://www.encodeproject.org/files/ENCFF920GYM/@@download/ENCFF920GYM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption ENCFF017IMJ fastq reads ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 1 100 paired-ended 1 ENCFF349MIY 2086569253 Michael Snyder, Stanford da58c2252770d023815075115aad1c18 SRA:SRR6214159 https://www.encodeproject.org/files/ENCFF017IMJ/@@download/ENCFF017IMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption ENCFF171QIU fastq reads ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 1 100 paired-ended 2 ENCFF920GYM 2551777753 Michael Snyder, Stanford 6d6dbbda436156b2a5c92d64877df50d SRA:SRR6214160 https://www.encodeproject.org/files/ENCFF171QIU/@@download/ENCFF171QIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption ENCFF795XNL bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 100 ENCFF017IMJ, ENCFF349MIY, ENCFF807MUK 3709819467 ENCODE Processing Pipeline 47652183cd8e93c130a4cf04cbc6493a https://www.encodeproject.org/files/ENCFF795XNL/@@download/ENCFF795XNL.bam hg19 released antibody characterized with exemption ENCFF316QXZ bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 100 ENCFF171QIU, ENCFF807MUK, ENCFF920GYM 4708379292 ENCODE Processing Pipeline a587da96025d9d8ce74fe0a41bd5e34b https://www.encodeproject.org/files/ENCFF316QXZ/@@download/ENCFF316QXZ.bam hg19 released antibody characterized with exemption ENCFF460BPQ bam unfiltered alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 100 ENCFF017IMJ, ENCFF349MIY, ENCFF643CGH 4451211756 ENCODE Processing Pipeline 06e3eeee02962a14ab7d925b1d404d46 https://www.encodeproject.org/files/ENCFF460BPQ/@@download/ENCFF460BPQ.bam GRCh38 released antibody characterized with exemption ENCFF715AOC bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 100 ENCFF017IMJ, ENCFF349MIY, ENCFF643CGH 3712062830 ENCODE Processing Pipeline fac5968690fbaba3bd134c4682ed3034 https://www.encodeproject.org/files/ENCFF715AOC/@@download/ENCFF715AOC.bam GRCh38 released antibody characterized with exemption ENCFF388ZQS bam unfiltered alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 100 ENCFF171QIU, ENCFF643CGH, ENCFF920GYM 5541131138 ENCODE Processing Pipeline b6ef3fbe51fe380b7271bf426c6ee496 https://www.encodeproject.org/files/ENCFF388ZQS/@@download/ENCFF388ZQS.bam GRCh38 released antibody characterized with exemption ENCFF516TOF bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 100 ENCFF171QIU, ENCFF643CGH, ENCFF920GYM 4711099203 ENCODE Processing Pipeline 8f6a725f8f747df14aa60d3efcc1c596 https://www.encodeproject.org/files/ENCFF516TOF/@@download/ENCFF516TOF.bam GRCh38 released antibody characterized with exemption ENCFF491QED bigWig signal p-value ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF715AOC, ENCFF910IKB 1143314958 ENCODE Processing Pipeline 0a8c1219ba463660acceb28a87d7096d https://www.encodeproject.org/files/ENCFF491QED/@@download/ENCFF491QED.bigWig GRCh38 released antibody characterized with exemption ENCFF703MYE bigWig signal p-value ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF227IZS, ENCFF516TOF 944819293 ENCODE Processing Pipeline 1f5eb00b0143b1832a4fdf4ee92201ba https://www.encodeproject.org/files/ENCFF703MYE/@@download/ENCFF703MYE.bigWig GRCh38 released antibody characterized with exemption ENCFF882LDR bigWig signal p-value ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF227IZS, ENCFF516TOF, ENCFF715AOC, ENCFF910IKB 2030806941 ENCODE Processing Pipeline 412e431b2cae19e4016d53a41d5cdad3 https://www.encodeproject.org/files/ENCFF882LDR/@@download/ENCFF882LDR.bigWig GRCh38 released antibody characterized with exemption ENCFF622LJZ bigWig fold change over control ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF715AOC, ENCFF910IKB 1063596716 ENCODE Processing Pipeline 459bc3fb3803b12c69ac6bb9cf48f8f9 https://www.encodeproject.org/files/ENCFF622LJZ/@@download/ENCFF622LJZ.bigWig GRCh38 released antibody characterized with exemption ENCFF841EBY bigWig fold change over control ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF227IZS, ENCFF516TOF 1158863847 ENCODE Processing Pipeline 990a8f16ddf8a5e960e9ab60abd11e4b https://www.encodeproject.org/files/ENCFF841EBY/@@download/ENCFF841EBY.bigWig GRCh38 released antibody characterized with exemption ENCFF505OTI bigWig fold change over control ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF227IZS, ENCFF516TOF, ENCFF715AOC, ENCFF910IKB 2020743509 ENCODE Processing Pipeline 3794ce6ed5b6e82b3039dbc8b085f862 https://www.encodeproject.org/files/ENCFF505OTI/@@download/ENCFF505OTI.bigWig GRCh38 released antibody characterized with exemption ENCFF231HME bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF227IZS, ENCFF516TOF 6500271 ENCODE Processing Pipeline ba17e5819f3161a36760a3921a55a2ce https://www.encodeproject.org/files/ENCFF231HME/@@download/ENCFF231HME.bed.gz GRCh38 released antibody characterized with exemption ENCFF912LXU bed narrowPeak optimal idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF231HME, ENCFF269WSX, ENCFF378QNO, ENCFF419RSJ 512986 ENCODE Processing Pipeline 5b1fd7afd9bf8cc4eff806045deca8bb https://www.encodeproject.org/files/ENCFF912LXU/@@download/ENCFF912LXU.bed.gz GRCh38 released antibody characterized with exemption ENCFF249EZG bigBed narrowPeak optimal idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF912LXU 1125678 ENCODE Processing Pipeline 3fd6a128aabecdae21fa364c04a148ec https://www.encodeproject.org/files/ENCFF249EZG/@@download/ENCFF249EZG.bigBed GRCh38 released antibody characterized with exemption ENCFF378QNO bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF715AOC, ENCFF910IKB 6638817 ENCODE Processing Pipeline ef56fc5c6e73b279a71c35e457c43adf https://www.encodeproject.org/files/ENCFF378QNO/@@download/ENCFF378QNO.bed.gz GRCh38 released antibody characterized with exemption ENCFF528SUF bigBed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF378QNO 13528673 ENCODE Processing Pipeline 1e1c9a84f5a8b06031c8784921048f19 https://www.encodeproject.org/files/ENCFF528SUF/@@download/ENCFF528SUF.bigBed GRCh38 released antibody characterized with exemption ENCFF269WSX bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF227IZS, ENCFF516TOF, ENCFF715AOC, ENCFF910IKB 7189263 ENCODE Processing Pipeline b8d08fd262f954af88176d3acfb3a58b https://www.encodeproject.org/files/ENCFF269WSX/@@download/ENCFF269WSX.bed.gz GRCh38 released antibody characterized with exemption ENCFF243DCE bigBed narrowPeak conservative idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF619AEN 750579 ENCODE Processing Pipeline b0310316709c814655089ea6d15986ed https://www.encodeproject.org/files/ENCFF243DCE/@@download/ENCFF243DCE.bigBed GRCh38 released antibody characterized with exemption ENCFF387VHR bigBed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF231HME 11329114 ENCODE Processing Pipeline d38b33e819853f44259e51a9c21ae5e4 https://www.encodeproject.org/files/ENCFF387VHR/@@download/ENCFF387VHR.bigBed GRCh38 released antibody characterized with exemption ENCFF841IQQ bigBed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF269WSX 13494354 ENCODE Processing Pipeline 81dfa2335df479009a157412e4c394ee https://www.encodeproject.org/files/ENCFF841IQQ/@@download/ENCFF841IQQ.bigBed GRCh38 released antibody characterized with exemption ENCFF619AEN bed narrowPeak conservative idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF231HME, ENCFF269WSX, ENCFF378QNO, ENCFF419RSJ 404912 ENCODE Processing Pipeline 63061bf463563b29a07f88d089140ed8 https://www.encodeproject.org/files/ENCFF619AEN/@@download/ENCFF619AEN.bed.gz GRCh38 released antibody characterized with exemption ENCFF615DLD bam unfiltered alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 100 ENCFF017IMJ, ENCFF349MIY, ENCFF807MUK 4447881227 ENCODE Processing Pipeline c615ea3c603ec8765a4119f924a92f39 https://www.encodeproject.org/files/ENCFF615DLD/@@download/ENCFF615DLD.bam hg19 released antibody characterized with exemption ENCFF490NLT bam unfiltered alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 100 ENCFF171QIU, ENCFF807MUK, ENCFF920GYM 5535631191 ENCODE Processing Pipeline 6087954628eb918345120c29f5bddd82 https://www.encodeproject.org/files/ENCFF490NLT/@@download/ENCFF490NLT.bam hg19 released antibody characterized with exemption ENCFF611YKV bigWig signal p-value ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF051LWI, ENCFF316QXZ 1111175796 ENCODE Processing Pipeline 3805a48bbfa6bd6fd35c152ba0f6d661 https://www.encodeproject.org/files/ENCFF611YKV/@@download/ENCFF611YKV.bigWig hg19 released antibody characterized with exemption ENCFF007BTP bigWig fold change over control ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF051LWI, ENCFF316QXZ 1158724730 ENCODE Processing Pipeline ca220fa4bafa81afe3df805edcdc56be https://www.encodeproject.org/files/ENCFF007BTP/@@download/ENCFF007BTP.bigWig hg19 released antibody characterized with exemption ENCFF870JMX bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF581ZJL, ENCFF795XNL 6627135 ENCODE Processing Pipeline 1936337eec37b48544e0fc591363ca1b https://www.encodeproject.org/files/ENCFF870JMX/@@download/ENCFF870JMX.bed.gz hg19 released antibody characterized with exemption ENCFF578MTS bigBed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF870JMX 13509808 ENCODE Processing Pipeline e19df2488c6abcdbc76937f2eddde950 https://www.encodeproject.org/files/ENCFF578MTS/@@download/ENCFF578MTS.bigBed hg19 released antibody characterized with exemption ENCFF493TZM bed narrowPeak optimal idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF001TDO, ENCFF334SEU, ENCFF337ISL, ENCFF870JMX 509065 ENCODE Processing Pipeline 3683eb367b6ea3aaab2799d3a4abd218 https://www.encodeproject.org/files/ENCFF493TZM/@@download/ENCFF493TZM.bed.gz hg19 released antibody characterized with exemption ENCFF573SBF bigWig signal p-value ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF581ZJL, ENCFF795XNL 1014246300 ENCODE Processing Pipeline 85e4dc5dc90aebbb28127db5842f9176 https://www.encodeproject.org/files/ENCFF573SBF/@@download/ENCFF573SBF.bigWig hg19 released antibody characterized with exemption ENCFF307HCN bigWig signal p-value ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF051LWI, ENCFF316QXZ, ENCFF581ZJL, ENCFF795XNL 1915830876 ENCODE Processing Pipeline cf39bf3cbdacb3314ddea33ff082b380 https://www.encodeproject.org/files/ENCFF307HCN/@@download/ENCFF307HCN.bigWig hg19 released antibody characterized with exemption ENCFF996MSD bigWig fold change over control ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF581ZJL, ENCFF795XNL 1032984689 ENCODE Processing Pipeline 0aebe6ef1b46888c9977fd17b6db56a6 https://www.encodeproject.org/files/ENCFF996MSD/@@download/ENCFF996MSD.bigWig hg19 released antibody characterized with exemption ENCFF471XQM bigWig fold change over control ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF051LWI, ENCFF316QXZ, ENCFF581ZJL, ENCFF795XNL 2069942005 ENCODE Processing Pipeline d407aa1cacacc50c90e02629744fa1a8 https://www.encodeproject.org/files/ENCFF471XQM/@@download/ENCFF471XQM.bigWig hg19 released antibody characterized with exemption ENCFF337ISL bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF051LWI, ENCFF316QXZ 6500158 ENCODE Processing Pipeline ea9c81a1b970ba86b392f3154ebd0115 https://www.encodeproject.org/files/ENCFF337ISL/@@download/ENCFF337ISL.bed.gz hg19 released antibody characterized with exemption ENCFF334SEU bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF051LWI, ENCFF316QXZ, ENCFF581ZJL, ENCFF795XNL 7187022 ENCODE Processing Pipeline 972dd524ce2b7557d282612e7c086b19 https://www.encodeproject.org/files/ENCFF334SEU/@@download/ENCFF334SEU.bed.gz hg19 released antibody characterized with exemption ENCFF708JXD bigBed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF337ISL 11314783 ENCODE Processing Pipeline b433b6845d99836baebaf803248c6fad https://www.encodeproject.org/files/ENCFF708JXD/@@download/ENCFF708JXD.bigBed hg19 released antibody characterized with exemption ENCFF807SPC bigBed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF334SEU 13484434 ENCODE Processing Pipeline 35cac36a2354d069aeeffb9f1b31ac37 https://www.encodeproject.org/files/ENCFF807SPC/@@download/ENCFF807SPC.bigBed hg19 released antibody characterized with exemption ENCFF139SRI bed narrowPeak conservative idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF001TDO, ENCFF334SEU, ENCFF337ISL, ENCFF870JMX 402824 ENCODE Processing Pipeline 603c30db2124ed38ab65a75b2e2e15ff https://www.encodeproject.org/files/ENCFF139SRI/@@download/ENCFF139SRI.bed.gz hg19 released antibody characterized with exemption ENCFF330ZKU bigBed narrowPeak conservative idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF139SRI 746161 ENCODE Processing Pipeline 23cb14069c069d605b9200e3f3064f5d https://www.encodeproject.org/files/ENCFF330ZKU/@@download/ENCFF330ZKU.bigBed hg19 released antibody characterized with exemption ENCFF865DQO bigBed narrowPeak optimal idr thresholded peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1, 2 ENCFF493TZM 1116728 ENCODE Processing Pipeline 9921343315359621e52feb7e70818fc8 https://www.encodeproject.org/files/ENCFF865DQO/@@download/ENCFF865DQO.bigBed hg19 released antibody characterized with exemption ENCFF837BAY fastq reads ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF258EWB 1792753856 Richard Myers, HAIB 6f8a839810501ca55a5436f980054208 SRA:SRR6214151 https://www.encodeproject.org/files/ENCFF837BAY/@@download/ENCFF837BAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF005BUI/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF258EWB fastq reads ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF837BAY 1749081299 Richard Myers, HAIB 910a933fef389921b0e78b962bab045b SRA:SRR6214151 https://www.encodeproject.org/files/ENCFF258EWB/@@download/ENCFF258EWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF841NYD/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF088YLM bam unfiltered alignments ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258EWB, ENCFF643CGH, ENCFF837BAY 4267872310 ENCODE Processing Pipeline daaf3e4247a7e666cc6b0fa466eb3dba https://www.encodeproject.org/files/ENCFF088YLM/@@download/ENCFF088YLM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF345LLY bam unfiltered alignments ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258EWB, ENCFF807MUK, ENCFF837BAY 4247899242 ENCODE Processing Pipeline 41627e660ffcb8c04593769e7481de73 https://www.encodeproject.org/files/ENCFF345LLY/@@download/ENCFF345LLY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF332RWH bam alignments ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258EWB, ENCFF643CGH, ENCFF837BAY 2947752680 ENCODE Processing Pipeline da6a7f4cd16b3bf70bd41c02ba448ffd https://www.encodeproject.org/files/ENCFF332RWH/@@download/ENCFF332RWH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF632PPF bam alignments ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258EWB, ENCFF807MUK, ENCFF837BAY 2943973236 ENCODE Processing Pipeline 759a66ca109f7cbc572b07abd545c3d6 https://www.encodeproject.org/files/ENCFF632PPF/@@download/ENCFF632PPF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF221GRG bigWig fold change over control ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF332RWH 1114823225 ENCODE Processing Pipeline d2f3ade0eccab1d153a68577ea6fda23 https://www.encodeproject.org/files/ENCFF221GRG/@@download/ENCFF221GRG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF749HZJ bigBed narrowPeak peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF673MXP 11571479 ENCODE Processing Pipeline 95bf3f5b3998e894da7a415ac8cd9bb0 https://www.encodeproject.org/files/ENCFF749HZJ/@@download/ENCFF749HZJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF811FTS bigWig signal p-value ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF332RWH 1050040604 ENCODE Processing Pipeline 00e1e8c4549dafa5de3c567ba1f8d45a https://www.encodeproject.org/files/ENCFF811FTS/@@download/ENCFF811FTS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF380WEI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF102IIP 28527 ENCODE Processing Pipeline 324f6c80d5d0bf35f12582782f0f1cb6 https://www.encodeproject.org/files/ENCFF380WEI/@@download/ENCFF380WEI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF673MXP bed narrowPeak peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF332RWH 5448563 ENCODE Processing Pipeline 916a7b54b0de5328756063cf5571ec43 https://www.encodeproject.org/files/ENCFF673MXP/@@download/ENCFF673MXP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF102IIP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF673MXP 554 ENCODE Processing Pipeline e36f9003b99e32fd32e43c4160a53c60 https://www.encodeproject.org/files/ENCFF102IIP/@@download/ENCFF102IIP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF442ECO bigWig signal p-value ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF632PPF 1160265613 ENCODE Processing Pipeline 2f4b2a9ea7e31a6766ec40b4bcf63d77 https://www.encodeproject.org/files/ENCFF442ECO/@@download/ENCFF442ECO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF289TYN bigWig fold change over control ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF632PPF 1188261503 ENCODE Processing Pipeline 8330a127e188e47fd4d7972b062908d7 https://www.encodeproject.org/files/ENCFF289TYN/@@download/ENCFF289TYN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF617XKX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF576LKG 431 ENCODE Processing Pipeline a8343f9be1f3c2da847a49b1d69b5511 https://www.encodeproject.org/files/ENCFF617XKX/@@download/ENCFF617XKX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF709JWT bigBed narrowPeak peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF576LKG 11538587 ENCODE Processing Pipeline 1ec1d35705669a05c47287b3465f364f https://www.encodeproject.org/files/ENCFF709JWT/@@download/ENCFF709JWT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF576LKG bed narrowPeak peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF632PPF 5428091 ENCODE Processing Pipeline 0b375c428c70248420bd909825e93196 https://www.encodeproject.org/files/ENCFF576LKG/@@download/ENCFF576LKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF467EXD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF617XKX 21648 ENCODE Processing Pipeline 38a0d5262da52771d7a6158e27cab5f1 https://www.encodeproject.org/files/ENCFF467EXD/@@download/ENCFF467EXD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF109FVU bam unfiltered alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF038RNL, ENCFF807MUK 1636309471 ENCODE Processing Pipeline 291027bbfd3825104f22b911bf252f8a https://www.encodeproject.org/files/ENCFF109FVU/@@download/ENCFF109FVU.bam hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF178QZL bam unfiltered alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF853ECX 1266554853 ENCODE Processing Pipeline 32721fc8b8ca9b6cca76f11872e5f4da https://www.encodeproject.org/files/ENCFF178QZL/@@download/ENCFF178QZL.bam hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF038RNL fastq reads ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 1512828529 Richard Myers, HAIB 15b34a6cdf8369ad4c160b007136bb57 SRA:SRR5331481 https://www.encodeproject.org/files/ENCFF038RNL/@@download/ENCFF038RNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF255HDL/ released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF853ECX fastq reads ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1147855608 Richard Myers, HAIB eefb0cf5ceedc28645c681844609a33f SRA:SRR5331480 https://www.encodeproject.org/files/ENCFF853ECX/@@download/ENCFF853ECX.fastq.gz Illumina HiSeq 2000 /files/ENCFF255HDL/ released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF374DQB bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF853ECX 950555468 ENCODE Processing Pipeline 26437acedcdd92077acadbd3c3b9f478 https://www.encodeproject.org/files/ENCFF374DQB/@@download/ENCFF374DQB.bam hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF296PIX bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF038RNL, ENCFF807MUK 1222924444 ENCODE Processing Pipeline c7747323d99f341f65dc5f4b49a57426 https://www.encodeproject.org/files/ENCFF296PIX/@@download/ENCFF296PIX.bam hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF022JFK bigWig signal p-value ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF374DQB, ENCFF927ZZQ 414876752 ENCODE Processing Pipeline 1b8d5338c7fabcb0ef742a9e90a7d051 https://www.encodeproject.org/files/ENCFF022JFK/@@download/ENCFF022JFK.bigWig hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF299JHQ bigWig signal p-value ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF296PIX, ENCFF927ZZQ 430868989 ENCODE Processing Pipeline abca703ce91012962883a0eca052ee09 https://www.encodeproject.org/files/ENCFF299JHQ/@@download/ENCFF299JHQ.bigWig hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF456QYH bigWig fold change over control ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF374DQB, ENCFF927ZZQ 448085091 ENCODE Processing Pipeline 88d24889b54733a457d9df3831d457f3 https://www.encodeproject.org/files/ENCFF456QYH/@@download/ENCFF456QYH.bigWig hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF422YCK bigWig fold change over control ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF296PIX, ENCFF927ZZQ 549121831 ENCODE Processing Pipeline 6864b01dd95261478537e8f78171be0d https://www.encodeproject.org/files/ENCFF422YCK/@@download/ENCFF422YCK.bigWig hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF678BIR bigWig signal p-value ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF296PIX, ENCFF374DQB, ENCFF927ZZQ 384244293 ENCODE Processing Pipeline 11c52014108e18957ee376294fd49e24 https://www.encodeproject.org/files/ENCFF678BIR/@@download/ENCFF678BIR.bigWig hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF705EEN bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF296PIX, ENCFF927ZZQ 6065843 ENCODE Processing Pipeline 7aa7bb6b33401d221d382afeac70d737 https://www.encodeproject.org/files/ENCFF705EEN/@@download/ENCFF705EEN.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF368XHC bigWig fold change over control ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF296PIX, ENCFF374DQB, ENCFF927ZZQ 799819344 ENCODE Processing Pipeline acdb02f20d2ad7830d2aba1289458fd0 https://www.encodeproject.org/files/ENCFF368XHC/@@download/ENCFF368XHC.bigWig hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF246FCW bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF374DQB, ENCFF927ZZQ 5947796 ENCODE Processing Pipeline adda5de0829bd5fa4cb56dd603a5e9aa https://www.encodeproject.org/files/ENCFF246FCW/@@download/ENCFF246FCW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF843PZW bed narrowPeak conservative idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF091AYC, ENCFF246FCW, ENCFF705EEN 234783 ENCODE Processing Pipeline 25b5032291d03d86c858a25c6c274cbc https://www.encodeproject.org/files/ENCFF843PZW/@@download/ENCFF843PZW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF091AYC bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF296PIX, ENCFF374DQB, ENCFF927ZZQ 6650693 ENCODE Processing Pipeline 5c503d140af9110a80d04ad0153239f2 https://www.encodeproject.org/files/ENCFF091AYC/@@download/ENCFF091AYC.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF947RNO bigBed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF091AYC 12971865 ENCODE Processing Pipeline 4ba0736d2735e228bde60fa31aba0e74 https://www.encodeproject.org/files/ENCFF947RNO/@@download/ENCFF947RNO.bigBed hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF418WDR bed narrowPeak optimal idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF091AYC, ENCFF246FCW, ENCFF705EEN 254742 ENCODE Processing Pipeline 66a153f2060d613665c656ed0f47f943 https://www.encodeproject.org/files/ENCFF418WDR/@@download/ENCFF418WDR.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF169RHQ bigBed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF705EEN 13211365 ENCODE Processing Pipeline c365156616bf2fe6118ad1674b2322c1 https://www.encodeproject.org/files/ENCFF169RHQ/@@download/ENCFF169RHQ.bigBed hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF154SBU bigBed narrowPeak conservative idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF843PZW 515061 ENCODE Processing Pipeline d779eca48654ffd45710f49d3a03d310 https://www.encodeproject.org/files/ENCFF154SBU/@@download/ENCFF154SBU.bigBed hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF584NWO bigBed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF246FCW 13134008 ENCODE Processing Pipeline 7547991d1db3aeceae57f1071fcdf133 https://www.encodeproject.org/files/ENCFF584NWO/@@download/ENCFF584NWO.bigBed hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF290XVZ bigBed narrowPeak optimal idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF418WDR 547413 ENCODE Processing Pipeline 956483e885962264b667e8df5678ab96 https://www.encodeproject.org/files/ENCFF290XVZ/@@download/ENCFF290XVZ.bigBed hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF240XUB bam unfiltered alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF853ECX 1272905197 ENCODE Processing Pipeline af6598eb0a5f36396c5f0434df1abc44 https://www.encodeproject.org/files/ENCFF240XUB/@@download/ENCFF240XUB.bam GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF014SFD bam unfiltered alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF038RNL, ENCFF643CGH 1642644934 ENCODE Processing Pipeline a348fc1b8978eeb8827848869c2c7a7a https://www.encodeproject.org/files/ENCFF014SFD/@@download/ENCFF014SFD.bam GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF257JTU bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF853ECX 950574006 ENCODE Processing Pipeline 3cae85e24247d657e72abd47332f0ca0 https://www.encodeproject.org/files/ENCFF257JTU/@@download/ENCFF257JTU.bam GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF214NPN bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF038RNL, ENCFF643CGH 1222803815 ENCODE Processing Pipeline 7c03cf4c1c91e2e6a0872a519dee785f https://www.encodeproject.org/files/ENCFF214NPN/@@download/ENCFF214NPN.bam GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF405UNT bigWig signal p-value ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF257JTU, ENCFF999KIK 413200905 ENCODE Processing Pipeline 398b48a255ef597cde0a7ddd44a43024 https://www.encodeproject.org/files/ENCFF405UNT/@@download/ENCFF405UNT.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF543HQF bigWig signal p-value ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF214NPN, ENCFF999KIK 426950785 ENCODE Processing Pipeline e5f1a0ed648062b119b496dccf5fbc84 https://www.encodeproject.org/files/ENCFF543HQF/@@download/ENCFF543HQF.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF594KKL bigWig signal p-value ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF214NPN, ENCFF257JTU, ENCFF999KIK 381770390 ENCODE Processing Pipeline d78496e02280fc6523de573a17f716f3 https://www.encodeproject.org/files/ENCFF594KKL/@@download/ENCFF594KKL.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF471WDT bigWig fold change over control ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF257JTU, ENCFF999KIK 445210314 ENCODE Processing Pipeline 466fefa40a14c9f459d6818caf6582b0 https://www.encodeproject.org/files/ENCFF471WDT/@@download/ENCFF471WDT.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF194YNU bigWig fold change over control ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF214NPN, ENCFF999KIK 538970615 ENCODE Processing Pipeline 403410ee39e560fe6c0b192e839f6e07 https://www.encodeproject.org/files/ENCFF194YNU/@@download/ENCFF194YNU.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF912JZP bigWig fold change over control ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF214NPN, ENCFF257JTU, ENCFF999KIK 798398462 ENCODE Processing Pipeline d138a527f9ee5d7c2244fb1c322b4ae2 https://www.encodeproject.org/files/ENCFF912JZP/@@download/ENCFF912JZP.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF337JAD bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF257JTU, ENCFF999KIK 5680877 ENCODE Processing Pipeline dda32f6dd4af945346b6166ea2280d4a https://www.encodeproject.org/files/ENCFF337JAD/@@download/ENCFF337JAD.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF342OEH bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF214NPN, ENCFF999KIK 5836729 ENCODE Processing Pipeline 5eb27c56d7c4db67f29e7ec4bc9c66b3 https://www.encodeproject.org/files/ENCFF342OEH/@@download/ENCFF342OEH.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF670QNI bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF214NPN, ENCFF257JTU, ENCFF999KIK 6472317 ENCODE Processing Pipeline 50aa27c5a3f300f018d7ad3c005d2493 https://www.encodeproject.org/files/ENCFF670QNI/@@download/ENCFF670QNI.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF698OIU bigBed narrowPeak conservative idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF130WFH 516575 ENCODE Processing Pipeline e52f36c2c4becd37c69cd6b72cac80e1 https://www.encodeproject.org/files/ENCFF698OIU/@@download/ENCFF698OIU.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF130WFH bed narrowPeak conservative idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF337JAD, ENCFF342OEH, ENCFF419RSJ, ENCFF670QNI 234743 ENCODE Processing Pipeline cd370fdc91496589c0d911d382b23498 https://www.encodeproject.org/files/ENCFF130WFH/@@download/ENCFF130WFH.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF866QON bigBed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF337JAD 13079304 ENCODE Processing Pipeline 1b38f2c9e2d74a0db1c6086f660044aa https://www.encodeproject.org/files/ENCFF866QON/@@download/ENCFF866QON.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF214GXA bigBed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF342OEH 13177567 ENCODE Processing Pipeline eac38b8181c65cf6de164359c5378770 https://www.encodeproject.org/files/ENCFF214GXA/@@download/ENCFF214GXA.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF432MWV bigBed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF670QNI 12973067 ENCODE Processing Pipeline ce4db14a94795a04534ce1f1972819a2 https://www.encodeproject.org/files/ENCFF432MWV/@@download/ENCFF432MWV.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF491GZH bigBed narrowPeak optimal idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF914IWA 553367 ENCODE Processing Pipeline b51b8032ce64689e582c04c79948607a https://www.encodeproject.org/files/ENCFF491GZH/@@download/ENCFF491GZH.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF914IWA bed narrowPeak optimal idr thresholded peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF337JAD, ENCFF342OEH, ENCFF419RSJ, ENCFF670QNI 257821 ENCODE Processing Pipeline c1402abe42b28960cc6c6e0205699b5d https://www.encodeproject.org/files/ENCFF914IWA/@@download/ENCFF914IWA.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF392CDE bam unfiltered alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 100 ENCFF148FMX, ENCFF528GYT, ENCFF807MUK 5960513929 ENCODE Processing Pipeline a469baa2571743354860355f47195dc9 https://www.encodeproject.org/files/ENCFF392CDE/@@download/ENCFF392CDE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF182CER bam unfiltered alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 100 ENCFF074UIO, ENCFF186DEJ, ENCFF807MUK 5211210396 ENCODE Processing Pipeline 28a40bbf4337919886fe8afbb6e0114a https://www.encodeproject.org/files/ENCFF182CER/@@download/ENCFF182CER.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF186DEJ fastq reads ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF074UIO 2456614804 Michael Snyder, Stanford d36020dd1e934fa2a66a1ca4573cfff2 SRA:SRR5112062 https://www.encodeproject.org/files/ENCFF186DEJ/@@download/ENCFF186DEJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF067HZB/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF148FMX fastq reads ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF528GYT 2706721649 Michael Snyder, Stanford b4d68d98f5e512e7d209b5557a9f6967 SRA:SRR5112061 https://www.encodeproject.org/files/ENCFF148FMX/@@download/ENCFF148FMX.fastq.gz Illumina HiSeq 2000 /files/ENCFF795KJT/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF528GYT fastq reads ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF148FMX 2751659952 Michael Snyder, Stanford 57479abd8ea021627ef380b7cded6dfe SRA:SRR5112061 https://www.encodeproject.org/files/ENCFF528GYT/@@download/ENCFF528GYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF067HZB/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF074UIO fastq reads ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF186DEJ 2411275464 Michael Snyder, Stanford d31319386d0ef2b3b931d5cbdc897f2d SRA:SRR5112062 https://www.encodeproject.org/files/ENCFF074UIO/@@download/ENCFF074UIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF795KJT/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF904PIO bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 100 ENCFF074UIO, ENCFF186DEJ, ENCFF807MUK 3945232879 ENCODE Processing Pipeline 90c9cae76e95e7f174199a52c762190e https://www.encodeproject.org/files/ENCFF904PIO/@@download/ENCFF904PIO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF070QUN bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 100 ENCFF148FMX, ENCFF528GYT, ENCFF807MUK 5067773423 ENCODE Processing Pipeline 7990830fdaf2860c49dbc0b8c2c30174 https://www.encodeproject.org/files/ENCFF070QUN/@@download/ENCFF070QUN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF528IKJ bigWig fold change over control ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF387AIX, ENCFF904PIO 999867453 ENCODE Processing Pipeline 30e4f36e5a9cecb1071a26a486201586 https://www.encodeproject.org/files/ENCFF528IKJ/@@download/ENCFF528IKJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF200CFU bigWig signal p-value ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF387AIX, ENCFF904PIO 1011415692 ENCODE Processing Pipeline a1bbdb73b99a67a31edaf9a25d7e45b0 https://www.encodeproject.org/files/ENCFF200CFU/@@download/ENCFF200CFU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF608LFT bam unfiltered alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 100 ENCFF074UIO, ENCFF186DEJ, ENCFF643CGH 5219372431 ENCODE Processing Pipeline 71fcf219e09ebb466cfb6b3a2453a1d2 https://www.encodeproject.org/files/ENCFF608LFT/@@download/ENCFF608LFT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF180NUP bam unfiltered alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 100 ENCFF148FMX, ENCFF528GYT, ENCFF643CGH 5971890499 ENCODE Processing Pipeline 55879f09cf852e4dd53450c9b8e2cd46 https://www.encodeproject.org/files/ENCFF180NUP/@@download/ENCFF180NUP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF158BYF bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 100 ENCFF074UIO, ENCFF186DEJ, ENCFF643CGH 3948178839 ENCODE Processing Pipeline dd4d0bb31b80a1986d4a13b937d3b606 https://www.encodeproject.org/files/ENCFF158BYF/@@download/ENCFF158BYF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF557QLG bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 100 ENCFF148FMX, ENCFF528GYT, ENCFF643CGH 5071912433 ENCODE Processing Pipeline 8a972ad63360616fb4442e54df1ab17f https://www.encodeproject.org/files/ENCFF557QLG/@@download/ENCFF557QLG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF758ZFN bigWig signal p-value ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF557QLG, ENCFF824YEY 1174859763 ENCODE Processing Pipeline 30c9c2715f6c421e52080434ee514124 https://www.encodeproject.org/files/ENCFF758ZFN/@@download/ENCFF758ZFN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF895BMN bigWig signal p-value ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF158BYF, ENCFF824YEY 815309089 ENCODE Processing Pipeline 5d62efd253b865e54d5197765d78742b https://www.encodeproject.org/files/ENCFF895BMN/@@download/ENCFF895BMN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF460WXB bigWig signal p-value ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF158BYF, ENCFF557QLG, ENCFF824YEY 1132074331 ENCODE Processing Pipeline 518454df4eae1f3f1d62de34863de8a0 https://www.encodeproject.org/files/ENCFF460WXB/@@download/ENCFF460WXB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF901WHQ bigWig fold change over control ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF557QLG, ENCFF824YEY 1167568955 ENCODE Processing Pipeline e56fc2f9ac8a73fbd42dfacbe86deb7e https://www.encodeproject.org/files/ENCFF901WHQ/@@download/ENCFF901WHQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF588HYK bigWig fold change over control ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF158BYF, ENCFF824YEY 1003204147 ENCODE Processing Pipeline 0c89258876d3f1d87dc63ad63a297820 https://www.encodeproject.org/files/ENCFF588HYK/@@download/ENCFF588HYK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF591WOF bigWig fold change over control ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF158BYF, ENCFF557QLG, ENCFF824YEY 1629249038 ENCODE Processing Pipeline 629a8d3782fc7db235b3099106862a2c https://www.encodeproject.org/files/ENCFF591WOF/@@download/ENCFF591WOF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF702DXT bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF557QLG, ENCFF824YEY 6648349 ENCODE Processing Pipeline 917cbd4b0f4338169a2c9cbb3d57ab32 https://www.encodeproject.org/files/ENCFF702DXT/@@download/ENCFF702DXT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF344XGC bigBed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF702DXT 13193467 ENCODE Processing Pipeline 4e8115cd77223fcd5a28dedbe0a9ec15 https://www.encodeproject.org/files/ENCFF344XGC/@@download/ENCFF344XGC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF444LCK bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF158BYF, ENCFF824YEY 6317319 ENCODE Processing Pipeline 04d711d3a5462a05c9058e7f166a1387 https://www.encodeproject.org/files/ENCFF444LCK/@@download/ENCFF444LCK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF041ONC bigBed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF444LCK 13244805 ENCODE Processing Pipeline c0d6d470936ff1a1b0317f254ecc57b0 https://www.encodeproject.org/files/ENCFF041ONC/@@download/ENCFF041ONC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF403RJK bigBed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF950QEI 13190548 ENCODE Processing Pipeline 354a51e4a6c7e882a780c1fae470748b https://www.encodeproject.org/files/ENCFF403RJK/@@download/ENCFF403RJK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF840ZAM bed narrowPeak conservative idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF444LCK, ENCFF702DXT, ENCFF950QEI 116854 ENCODE Processing Pipeline 26bef3e658884fa3c1a2245a0645a8c8 https://www.encodeproject.org/files/ENCFF840ZAM/@@download/ENCFF840ZAM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF950QEI bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF158BYF, ENCFF557QLG, ENCFF824YEY 7156972 ENCODE Processing Pipeline e3752a36a4ba63ba0ee052e127370976 https://www.encodeproject.org/files/ENCFF950QEI/@@download/ENCFF950QEI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF931SVP bed narrowPeak optimal idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF444LCK, ENCFF702DXT, ENCFF950QEI 192620 ENCODE Processing Pipeline 5645ffd3c2406c5968e2bbe78f27c11a https://www.encodeproject.org/files/ENCFF931SVP/@@download/ENCFF931SVP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF443PUI bigBed narrowPeak conservative idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF840ZAM 294894 ENCODE Processing Pipeline 8dd691c9d88638af1c9d8f70e7a2ae13 https://www.encodeproject.org/files/ENCFF443PUI/@@download/ENCFF443PUI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF079CJV bigBed narrowPeak optimal idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF931SVP 489692 ENCODE Processing Pipeline 5d34ee1e70b31027ad549fec2c171824 https://www.encodeproject.org/files/ENCFF079CJV/@@download/ENCFF079CJV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF081GRD bigBed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF401ROZ 13163324 ENCODE Processing Pipeline 31e521db7ab16068f99f391c5b48fda0 https://www.encodeproject.org/files/ENCFF081GRD/@@download/ENCFF081GRD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF422YUB bigWig signal p-value ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF070QUN, ENCFF387AIX 1173051213 ENCODE Processing Pipeline 0adf25b77a8f8fd0e39cce0393c22807 https://www.encodeproject.org/files/ENCFF422YUB/@@download/ENCFF422YUB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF904LWU bigWig fold change over control ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF070QUN, ENCFF387AIX 1161650209 ENCODE Processing Pipeline 254ba8ad7284bb5f1dd6c32b3ca2b46c https://www.encodeproject.org/files/ENCFF904LWU/@@download/ENCFF904LWU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF145XQW bigBed narrowPeak optimal idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF580QGA 490521 ENCODE Processing Pipeline 53fc1958b5a16bd97950a25e29de3cad https://www.encodeproject.org/files/ENCFF145XQW/@@download/ENCFF145XQW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF993MOQ bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF387AIX, ENCFF904PIO 6311225 ENCODE Processing Pipeline 11f6ed6c2dc07141fabb2e9e59bf1606 https://www.encodeproject.org/files/ENCFF993MOQ/@@download/ENCFF993MOQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF401ROZ bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF070QUN, ENCFF387AIX, ENCFF904PIO 7156529 ENCODE Processing Pipeline 74c2adb3a26e22eadbffdd10641b898a https://www.encodeproject.org/files/ENCFF401ROZ/@@download/ENCFF401ROZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF998POF bigBed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF993MOQ 13226057 ENCODE Processing Pipeline 26b193484d0a36eb3d8167769ab5042c https://www.encodeproject.org/files/ENCFF998POF/@@download/ENCFF998POF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF939ETO bed narrowPeak conservative idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF347CVK, ENCFF401ROZ, ENCFF993MOQ 118707 ENCODE Processing Pipeline 482a64ac5276f1a7babed1320153ec49 https://www.encodeproject.org/files/ENCFF939ETO/@@download/ENCFF939ETO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF580QGA bed narrowPeak optimal idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF347CVK, ENCFF401ROZ, ENCFF993MOQ 195207 ENCODE Processing Pipeline e5b33520cb44052d0d417f7ef5d0e38a https://www.encodeproject.org/files/ENCFF580QGA/@@download/ENCFF580QGA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF106AQL bigWig signal p-value ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF070QUN, ENCFF387AIX, ENCFF904PIO 1153499286 ENCODE Processing Pipeline 44ea21d58dc3aa3062c246ad2f0f8f22 https://www.encodeproject.org/files/ENCFF106AQL/@@download/ENCFF106AQL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF229BST bigWig fold change over control ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF070QUN, ENCFF387AIX, ENCFF904PIO 1653640430 ENCODE Processing Pipeline 8b84c7c2c6f95be5e7be227666220231 https://www.encodeproject.org/files/ENCFF229BST/@@download/ENCFF229BST.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF347CVK bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF070QUN, ENCFF387AIX 6644140 ENCODE Processing Pipeline 1973f2cfc89d73a80ac9d8fb35c64493 https://www.encodeproject.org/files/ENCFF347CVK/@@download/ENCFF347CVK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF923TGJ bigBed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF347CVK 13176486 ENCODE Processing Pipeline 50695df62708ef9bab1de32a783bede7 https://www.encodeproject.org/files/ENCFF923TGJ/@@download/ENCFF923TGJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF536FXJ bigBed narrowPeak conservative idr thresholded peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF939ETO 342240 ENCODE Processing Pipeline 50ba74e3a155c2af9c32c2a4d073dbeb https://www.encodeproject.org/files/ENCFF536FXJ/@@download/ENCFF536FXJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF091ULK bam unfiltered alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 50 ENCFF801MAM, ENCFF807MUK 956912828 ENCODE Processing Pipeline 68af80fae2f795c970e4cf55b74f935b https://www.encodeproject.org/files/ENCFF091ULK/@@download/ENCFF091ULK.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF415BST bam unfiltered alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF822AJG 1138307039 ENCODE Processing Pipeline 84a093b23e7bcbc24cc4f8c2a3f3244c https://www.encodeproject.org/files/ENCFF415BST/@@download/ENCFF415BST.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF801MAM fastq reads ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 937199330 Richard Myers, HAIB ea9b76796419996d042c381243df7d71 SRA:SRR5331164 https://www.encodeproject.org/files/ENCFF801MAM/@@download/ENCFF801MAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF105CNG/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF822AJG fastq reads ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1119483973 Richard Myers, HAIB e8fd5620a9a497ae2d1e1ac687d3a98e SRA:SRR5331163 https://www.encodeproject.org/files/ENCFF822AJG/@@download/ENCFF822AJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF105CNG/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF051OAV bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF822AJG 857239659 ENCODE Processing Pipeline 331ec482b6a825598d1982a0834c214c https://www.encodeproject.org/files/ENCFF051OAV/@@download/ENCFF051OAV.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF528KWW bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF801MAM, ENCFF807MUK 725800333 ENCODE Processing Pipeline a5eb43feed3a804da1ffa442f2913dfe https://www.encodeproject.org/files/ENCFF528KWW/@@download/ENCFF528KWW.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF765AVR bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF051OAV, ENCFF231YLU 5527136 ENCODE Processing Pipeline eb8d4b0505df6f34667b376971e36816 https://www.encodeproject.org/files/ENCFF765AVR/@@download/ENCFF765AVR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF925KRY bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051OAV, ENCFF231YLU, ENCFF528KWW 6062921 ENCODE Processing Pipeline 03f3426a143628572d27640cbc23176a https://www.encodeproject.org/files/ENCFF925KRY/@@download/ENCFF925KRY.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF537YPR bigWig signal p-value ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF051OAV, ENCFF231YLU 398510841 ENCODE Processing Pipeline b74480d557d19e96f96b11ca702d5d3c https://www.encodeproject.org/files/ENCFF537YPR/@@download/ENCFF537YPR.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF419ALT bigWig signal p-value ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051OAV, ENCFF231YLU, ENCFF528KWW 495163588 ENCODE Processing Pipeline 6ce78272a801d8e4342705db0fff9417 https://www.encodeproject.org/files/ENCFF419ALT/@@download/ENCFF419ALT.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF601BIM bigWig signal p-value ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF231YLU, ENCFF528KWW 382491233 ENCODE Processing Pipeline 0f7e70a2817cc758c4f936a2eb3e098e https://www.encodeproject.org/files/ENCFF601BIM/@@download/ENCFF601BIM.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF983EBS bigWig fold change over control ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF051OAV, ENCFF231YLU 374007626 ENCODE Processing Pipeline 481205800cf7ef41abca6b6ca4f849d9 https://www.encodeproject.org/files/ENCFF983EBS/@@download/ENCFF983EBS.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF332OXV bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF231YLU, ENCFF528KWW 5157282 ENCODE Processing Pipeline 2cfa4c617c8654ce52b9d9bea96e6149 https://www.encodeproject.org/files/ENCFF332OXV/@@download/ENCFF332OXV.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF879CZA bigBed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF332OXV 10833077 ENCODE Processing Pipeline f0d8097f7b24a26157cbea563dc69d57 https://www.encodeproject.org/files/ENCFF879CZA/@@download/ENCFF879CZA.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF945ZRJ bigBed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF925KRY 11506510 ENCODE Processing Pipeline 60aab806f7e93cb83ea755bab7e915be https://www.encodeproject.org/files/ENCFF945ZRJ/@@download/ENCFF945ZRJ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF241KRI bed narrowPeak conservative idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF332OXV, ENCFF765AVR, ENCFF925KRY 1022373 ENCODE Processing Pipeline 7e343e4b08b2d3a09a40c8715bf55d9f https://www.encodeproject.org/files/ENCFF241KRI/@@download/ENCFF241KRI.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF379VSH bigBed narrowPeak optimal idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF734ALE 1770895 ENCODE Processing Pipeline 3c1ba17529f51caa73eaa6fa6f311ab9 https://www.encodeproject.org/files/ENCFF379VSH/@@download/ENCFF379VSH.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF909BKK bigWig fold change over control ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF231YLU, ENCFF528KWW 322974276 ENCODE Processing Pipeline 9cad687a748e40f46cd30835eddf1c16 https://www.encodeproject.org/files/ENCFF909BKK/@@download/ENCFF909BKK.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF120BII bigWig fold change over control ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051OAV, ENCFF231YLU, ENCFF528KWW 583373638 ENCODE Processing Pipeline 2e15d04d6c1721d36c709d0311ab638d https://www.encodeproject.org/files/ENCFF120BII/@@download/ENCFF120BII.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF399XCG bigBed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF765AVR 11231798 ENCODE Processing Pipeline c51cc55acf1d13ded1e281318622a9ef https://www.encodeproject.org/files/ENCFF399XCG/@@download/ENCFF399XCG.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF732GXO bigBed narrowPeak conservative idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF241KRI 1709737 ENCODE Processing Pipeline 32b5228455f803ba4ec4cf388965cd6c https://www.encodeproject.org/files/ENCFF732GXO/@@download/ENCFF732GXO.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF734ALE bed narrowPeak optimal idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF332OXV, ENCFF765AVR, ENCFF925KRY 1069944 ENCODE Processing Pipeline a693f52a70b13cbf3379c94bebd70962 https://www.encodeproject.org/files/ENCFF734ALE/@@download/ENCFF734ALE.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF970PZO bam unfiltered alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF822AJG 1140435824 ENCODE Processing Pipeline 6d75c6740bbec648965b3da0be02574c https://www.encodeproject.org/files/ENCFF970PZO/@@download/ENCFF970PZO.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF280INZ bam unfiltered alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 50 ENCFF643CGH, ENCFF801MAM 958636583 ENCODE Processing Pipeline 5565ff2e1762a9c5e487988301b60423 https://www.encodeproject.org/files/ENCFF280INZ/@@download/ENCFF280INZ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF200WCM bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 50 ENCFF643CGH, ENCFF801MAM 725614179 ENCODE Processing Pipeline f89c794a54e1a7a15ec41026100e000b https://www.encodeproject.org/files/ENCFF200WCM/@@download/ENCFF200WCM.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF346ENH bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF822AJG 857056875 ENCODE Processing Pipeline dd071e72914f4808af8da625417ee0b6 https://www.encodeproject.org/files/ENCFF346ENH/@@download/ENCFF346ENH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF013ZPN bigWig signal p-value ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF346ENH, ENCFF750GYK 424295983 ENCODE Processing Pipeline 35f0154480d4651109b0ff94b8dc6136 https://www.encodeproject.org/files/ENCFF013ZPN/@@download/ENCFF013ZPN.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF414LLA bigWig signal p-value ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF200WCM, ENCFF346ENH, ENCFF750GYK 491799386 ENCODE Processing Pipeline c902a0ba101bfc46d4232a47437dd169 https://www.encodeproject.org/files/ENCFF414LLA/@@download/ENCFF414LLA.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF361QVH bigWig fold change over control ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF346ENH, ENCFF750GYK 374002123 ENCODE Processing Pipeline dbabf8c85bc2c9a62fe67a60664602fa https://www.encodeproject.org/files/ENCFF361QVH/@@download/ENCFF361QVH.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF289DIW bigWig signal p-value ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF200WCM, ENCFF750GYK 442177392 ENCODE Processing Pipeline b7c4f19e5f8eb48a9500815b3630f85b https://www.encodeproject.org/files/ENCFF289DIW/@@download/ENCFF289DIW.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF244LQL bigWig fold change over control ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF200WCM, ENCFF750GYK 322751105 ENCODE Processing Pipeline e7d0115d432e1d699ff9b7cb4eb5b2d9 https://www.encodeproject.org/files/ENCFF244LQL/@@download/ENCFF244LQL.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF793MTS bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF200WCM, ENCFF346ENH, ENCFF750GYK 5926974 ENCODE Processing Pipeline af1fa3b957b572a1e3569a59d59bb2e7 https://www.encodeproject.org/files/ENCFF793MTS/@@download/ENCFF793MTS.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF685DYE bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF346ENH, ENCFF750GYK 5393716 ENCODE Processing Pipeline 1214e25afcfa1548760c362a2c84785b https://www.encodeproject.org/files/ENCFF685DYE/@@download/ENCFF685DYE.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF771KZZ bigWig fold change over control ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF200WCM, ENCFF346ENH, ENCFF750GYK 580244448 ENCODE Processing Pipeline 3255cd994437ea5115f1aba6ab0d61fe https://www.encodeproject.org/files/ENCFF771KZZ/@@download/ENCFF771KZZ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF196OKL bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF200WCM, ENCFF750GYK 5046434 ENCODE Processing Pipeline b06b2bd2c9b295548138b0c253e869fb https://www.encodeproject.org/files/ENCFF196OKL/@@download/ENCFF196OKL.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF853BVN bigBed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF685DYE 11106068 ENCODE Processing Pipeline 88d23f4924c8242984af077d1237d843 https://www.encodeproject.org/files/ENCFF853BVN/@@download/ENCFF853BVN.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF739AMM bigBed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF793MTS 11451475 ENCODE Processing Pipeline d48ea36fa511d4eeb5729a2f47c446a7 https://www.encodeproject.org/files/ENCFF739AMM/@@download/ENCFF739AMM.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF409PJH bigBed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF196OKL 10738257 ENCODE Processing Pipeline 5684972289ddb58460964980d7627d12 https://www.encodeproject.org/files/ENCFF409PJH/@@download/ENCFF409PJH.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF148OLB bigBed narrowPeak conservative idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF851IPG 1713952 ENCODE Processing Pipeline 13732d3c578fe16db94d65796c24ada4 https://www.encodeproject.org/files/ENCFF148OLB/@@download/ENCFF148OLB.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF851IPG bed narrowPeak conservative idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF196OKL, ENCFF419RSJ, ENCFF685DYE, ENCFF793MTS 1023346 ENCODE Processing Pipeline 153deac36ee1393d6278d753ac7abea3 https://www.encodeproject.org/files/ENCFF851IPG/@@download/ENCFF851IPG.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF247IVC bigBed narrowPeak optimal idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF330VPL 1779448 ENCODE Processing Pipeline e5fd20943f7da8cb4c03050a88d7402e https://www.encodeproject.org/files/ENCFF247IVC/@@download/ENCFF247IVC.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF330VPL bed narrowPeak optimal idr thresholded peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF196OKL, ENCFF419RSJ, ENCFF685DYE, ENCFF793MTS 1074288 ENCODE Processing Pipeline 6d45b623065fdc36d56bf162cec6b57c https://www.encodeproject.org/files/ENCFF330VPL/@@download/ENCFF330VPL.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF415SRB bam unfiltered alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF807MUK, ENCFF807OLO, ENCFF942FDD 5999183164 ENCODE Processing Pipeline 05ff23b57440c65429ea4ade84dbd44e https://www.encodeproject.org/files/ENCFF415SRB/@@download/ENCFF415SRB.bam hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF257DIX bam unfiltered alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF438UFH, ENCFF807MUK, ENCFF994DFN 6054573160 ENCODE Processing Pipeline 8d89f3528ecbbc597ce2f89222d0fa57 https://www.encodeproject.org/files/ENCFF257DIX/@@download/ENCFF257DIX.bam hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF807OLO fastq reads ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF942FDD 2754041770 Michael Snyder, Stanford bcf0e73e571a7e09e4dab8501cc4323a SRA:SRR5111747 https://www.encodeproject.org/files/ENCFF807OLO/@@download/ENCFF807OLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF419AVJ/ released missing genetic modification characterization missing mapped reads lengths ENCFF994DFN fastq reads ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF438UFH 2778362142 Michael Snyder, Stanford 14f3ff06d7dfe4c13cfdff366e226c1a SRA:SRR5111746 https://www.encodeproject.org/files/ENCFF994DFN/@@download/ENCFF994DFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF918QAP/ released missing genetic modification characterization missing mapped reads lengths ENCFF438UFH fastq reads ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF994DFN 2770312370 Michael Snyder, Stanford 5f8cf21523bf2266f6542f768535ecbe SRA:SRR5111746 https://www.encodeproject.org/files/ENCFF438UFH/@@download/ENCFF438UFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF419AVJ/ released missing genetic modification characterization missing mapped reads lengths ENCFF942FDD fastq reads ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF807OLO 2759154489 Michael Snyder, Stanford d98cea0616998d959052939ad744f4cd SRA:SRR5111747 https://www.encodeproject.org/files/ENCFF942FDD/@@download/ENCFF942FDD.fastq.gz Illumina HiSeq 2000 /files/ENCFF918QAP/ released missing genetic modification characterization missing mapped reads lengths ENCFF929AIJ bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF807MUK, ENCFF807OLO, ENCFF942FDD 5159466376 ENCODE Processing Pipeline 95cb0d0b0cfbb64b261ae470f577d976 https://www.encodeproject.org/files/ENCFF929AIJ/@@download/ENCFF929AIJ.bam hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF630NYB bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF438UFH, ENCFF807MUK, ENCFF994DFN 5304234218 ENCODE Processing Pipeline 1da982435a8bc49e319b1f5696d5eb85 https://www.encodeproject.org/files/ENCFF630NYB/@@download/ENCFF630NYB.bam hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF429IQP bigWig signal p-value ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF630NYB, ENCFF675KUA 1116256550 ENCODE Processing Pipeline df6f80e896eb42639fe7d955724acd4c https://www.encodeproject.org/files/ENCFF429IQP/@@download/ENCFF429IQP.bigWig hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF153SCC bigWig signal p-value ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF630NYB, ENCFF675KUA, ENCFF929AIJ 1065767496 ENCODE Processing Pipeline 2602246e7e78413e7297e506467a5d17 https://www.encodeproject.org/files/ENCFF153SCC/@@download/ENCFF153SCC.bigWig hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF940QWH bigWig fold change over control ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF675KUA, ENCFF929AIJ 1210045992 ENCODE Processing Pipeline 206fc822c20f0da9930de57ce87b3873 https://www.encodeproject.org/files/ENCFF940QWH/@@download/ENCFF940QWH.bigWig hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF349PCU bigWig fold change over control ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF630NYB, ENCFF675KUA 1236992906 ENCODE Processing Pipeline b932e4ac1ded9762569829464cae8c3f https://www.encodeproject.org/files/ENCFF349PCU/@@download/ENCFF349PCU.bigWig hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF514OUD bigWig signal p-value ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF675KUA, ENCFF929AIJ 1114832330 ENCODE Processing Pipeline f1e50cd99ab2656321bea5f1d6f6cd2c https://www.encodeproject.org/files/ENCFF514OUD/@@download/ENCFF514OUD.bigWig hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF061GJT bigWig fold change over control ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF630NYB, ENCFF675KUA, ENCFF929AIJ 1841648269 ENCODE Processing Pipeline 4f049501318398d07aaf5fd3e562df9b https://www.encodeproject.org/files/ENCFF061GJT/@@download/ENCFF061GJT.bigWig hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF099BYY bam unfiltered alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF438UFH, ENCFF643CGH, ENCFF994DFN 6065155796 ENCODE Processing Pipeline 780c7d573bf9db85bf4d725f76cd0da3 https://www.encodeproject.org/files/ENCFF099BYY/@@download/ENCFF099BYY.bam GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF185DKY bam unfiltered alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF643CGH, ENCFF807OLO, ENCFF942FDD 6009970535 ENCODE Processing Pipeline 2f4466998b8b9d160339182e719e2b71 https://www.encodeproject.org/files/ENCFF185DKY/@@download/ENCFF185DKY.bam GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF378QWS bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF438UFH, ENCFF643CGH, ENCFF994DFN 5308384950 ENCODE Processing Pipeline 4f3c52895c6b867d874690c70e99960a https://www.encodeproject.org/files/ENCFF378QWS/@@download/ENCFF378QWS.bam GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF878UKW bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF643CGH, ENCFF807OLO, ENCFF942FDD 5162800080 ENCODE Processing Pipeline 97a674507fc671e2c8188bf9417ad1e1 https://www.encodeproject.org/files/ENCFF878UKW/@@download/ENCFF878UKW.bam GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF160AHO bigWig signal p-value ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF247YFL, ENCFF878UKW 1116612527 ENCODE Processing Pipeline 673cb2b323d791ddf92fcf0f9f376879 https://www.encodeproject.org/files/ENCFF160AHO/@@download/ENCFF160AHO.bigWig GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF647ZWZ bigWig signal p-value ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF247YFL, ENCFF378QWS 1118181049 ENCODE Processing Pipeline 6fd459de6323d48cfe39ab6a81fadafa https://www.encodeproject.org/files/ENCFF647ZWZ/@@download/ENCFF647ZWZ.bigWig GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF667BQS bigWig signal p-value ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF247YFL, ENCFF378QWS, ENCFF878UKW 1078266979 ENCODE Processing Pipeline d49cc90d87dd09ba08e48902af856ad3 https://www.encodeproject.org/files/ENCFF667BQS/@@download/ENCFF667BQS.bigWig GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF723QDQ bigWig fold change over control ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF247YFL, ENCFF878UKW 1211762718 ENCODE Processing Pipeline faf434a48157b830be15540668b07a92 https://www.encodeproject.org/files/ENCFF723QDQ/@@download/ENCFF723QDQ.bigWig GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF194WFM bigWig fold change over control ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF247YFL, ENCFF378QWS 1235469796 ENCODE Processing Pipeline 01d67e4c4bf525b93067ef7a5180faa8 https://www.encodeproject.org/files/ENCFF194WFM/@@download/ENCFF194WFM.bigWig GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF191STL bigWig fold change over control ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF247YFL, ENCFF378QWS, ENCFF878UKW 1861047155 ENCODE Processing Pipeline ae0ab8a37dbf60036238729276246c96 https://www.encodeproject.org/files/ENCFF191STL/@@download/ENCFF191STL.bigWig GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF886YGC bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF247YFL, ENCFF878UKW 6487146 ENCODE Processing Pipeline 2be9aa46645d6ea3e6ef3df84c27ffa2 https://www.encodeproject.org/files/ENCFF886YGC/@@download/ENCFF886YGC.bed.gz GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF563YTX bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF247YFL, ENCFF378QWS 6629776 ENCODE Processing Pipeline 05a7ca4e0219e56ce7ced16bef428130 https://www.encodeproject.org/files/ENCFF563YTX/@@download/ENCFF563YTX.bed.gz GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF344ZPO bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF247YFL, ENCFF378QWS, ENCFF878UKW 7132314 ENCODE Processing Pipeline 5843c2c157da38dfd0a9cca3056136b7 https://www.encodeproject.org/files/ENCFF344ZPO/@@download/ENCFF344ZPO.bed.gz GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF545XRC bigBed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF886YGC 11108638 ENCODE Processing Pipeline b76fd9c9cf1dd13a817861632f35cb54 https://www.encodeproject.org/files/ENCFF545XRC/@@download/ENCFF545XRC.bigBed GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF202MFT bigBed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF563YTX 13230859 ENCODE Processing Pipeline ea863ec385d700e55be6c49480cf8c1e https://www.encodeproject.org/files/ENCFF202MFT/@@download/ENCFF202MFT.bigBed GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF998NUD bigBed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF344ZPO 13051558 ENCODE Processing Pipeline cbce9eb2250703539ec05419abd02616 https://www.encodeproject.org/files/ENCFF998NUD/@@download/ENCFF998NUD.bigBed GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF625FYY bed narrowPeak conservative idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF344ZPO, ENCFF419RSJ, ENCFF563YTX, ENCFF886YGC 161924 ENCODE Processing Pipeline 2bb0ea95ed7946957ca896cbc0262448 https://www.encodeproject.org/files/ENCFF625FYY/@@download/ENCFF625FYY.bed.gz GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF154AVN bigBed narrowPeak conservative idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF625FYY 388309 ENCODE Processing Pipeline f8625d90d5fd6626a5af865a6960ab1a https://www.encodeproject.org/files/ENCFF154AVN/@@download/ENCFF154AVN.bigBed GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF287GDT bed narrowPeak optimal idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF344ZPO, ENCFF419RSJ, ENCFF563YTX, ENCFF886YGC 219361 ENCODE Processing Pipeline f8a5c7ac5b7fc36191a5f8785030e1dd https://www.encodeproject.org/files/ENCFF287GDT/@@download/ENCFF287GDT.bed.gz GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF936SUW bigBed narrowPeak optimal idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF287GDT 486187 ENCODE Processing Pipeline 6e0778993359efe1eb4fbe1a35bd5ce5 https://www.encodeproject.org/files/ENCFF936SUW/@@download/ENCFF936SUW.bigBed GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF204DNA bigBed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF830SMA 11090734 ENCODE Processing Pipeline a14982d43b1ae98286155c0a142bcc36 https://www.encodeproject.org/files/ENCFF204DNA/@@download/ENCFF204DNA.bigBed hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF830SMA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF675KUA, ENCFF929AIJ 6484837 ENCODE Processing Pipeline 9f337526edf3461d6521791dee0f24c5 https://www.encodeproject.org/files/ENCFF830SMA/@@download/ENCFF830SMA.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF604GTI bigBed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF255LGM 13038615 ENCODE Processing Pipeline 268e0c1400661ef3f07d7d1438f769a0 https://www.encodeproject.org/files/ENCFF604GTI/@@download/ENCFF604GTI.bigBed hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF754ZLZ bigBed narrowPeak conservative idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF581HPR 388482 ENCODE Processing Pipeline e6777177e66d256ba09a008c42fe1039 https://www.encodeproject.org/files/ENCFF754ZLZ/@@download/ENCFF754ZLZ.bigBed hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF239BGX bigBed narrowPeak optimal idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF717TWA 485540 ENCODE Processing Pipeline 740804ce3dc4bced57dc5d70960fba05 https://www.encodeproject.org/files/ENCFF239BGX/@@download/ENCFF239BGX.bigBed hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF255LGM bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF630NYB, ENCFF675KUA, ENCFF929AIJ 7130529 ENCODE Processing Pipeline 6e83c1b938f397820dbf794db89f4c4d https://www.encodeproject.org/files/ENCFF255LGM/@@download/ENCFF255LGM.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF581HPR bed narrowPeak conservative idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF255LGM, ENCFF830SMA, ENCFF842XXA 164735 ENCODE Processing Pipeline 117180912cb7d5c4f8bb975ca6ee83f9 https://www.encodeproject.org/files/ENCFF581HPR/@@download/ENCFF581HPR.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF842XXA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF630NYB, ENCFF675KUA 6676264 ENCODE Processing Pipeline f94f0bcb0b973bf3126547a8d5a59a2e https://www.encodeproject.org/files/ENCFF842XXA/@@download/ENCFF842XXA.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF807QDY bigBed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF842XXA 13211365 ENCODE Processing Pipeline 726cf40a8a15c3d8c6d245dba61b93ad https://www.encodeproject.org/files/ENCFF807QDY/@@download/ENCFF807QDY.bigBed hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF717TWA bed narrowPeak optimal idr thresholded peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF255LGM, ENCFF830SMA, ENCFF842XXA 221756 ENCODE Processing Pipeline d6e556ebcba694582483815e5740993f https://www.encodeproject.org/files/ENCFF717TWA/@@download/ENCFF717TWA.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF825BIK bam unfiltered alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428KVQ, ENCFF807MUK, ENCFF845NIC 6041923995 ENCODE Processing Pipeline 18d93498d3c305bc6e6165ffc1aad561 https://www.encodeproject.org/files/ENCFF825BIK/@@download/ENCFF825BIK.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF772YZU bam unfiltered alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF637DCS, ENCFF807MUK, ENCFF813FAX 5397575007 ENCODE Processing Pipeline 757bc5ce2e1dedf13bbbb107917d9ec7 https://www.encodeproject.org/files/ENCFF772YZU/@@download/ENCFF772YZU.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF637DCS fastq reads ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF813FAX 2451271259 Michael Snyder, Stanford 6493c7d3a347c12bd1820017568759ea https://www.encodeproject.org/files/ENCFF637DCS/@@download/ENCFF637DCS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released experiment not submitted to GEO partially characterized antibody ENCFF845NIC fastq reads ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF428KVQ 2733932953 Michael Snyder, Stanford fff27a29a8cb16ddd8b6c05c9d0d45f6 https://www.encodeproject.org/files/ENCFF845NIC/@@download/ENCFF845NIC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released experiment not submitted to GEO partially characterized antibody ENCFF428KVQ fastq reads ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF845NIC 2774637020 Michael Snyder, Stanford 67274a212ea517c15e6c7423d2f56880 https://www.encodeproject.org/files/ENCFF428KVQ/@@download/ENCFF428KVQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released experiment not submitted to GEO partially characterized antibody ENCFF813FAX fastq reads ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF637DCS 2421090600 Michael Snyder, Stanford 2ab49ac46ddafacdd940d7b05bb114a4 https://www.encodeproject.org/files/ENCFF813FAX/@@download/ENCFF813FAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released experiment not submitted to GEO partially characterized antibody ENCFF986MVN bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF428KVQ, ENCFF807MUK, ENCFF845NIC 5283453352 ENCODE Processing Pipeline 954eede4f0093e7192ea07c119f8648b https://www.encodeproject.org/files/ENCFF986MVN/@@download/ENCFF986MVN.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF081SMO bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF637DCS, ENCFF807MUK, ENCFF813FAX 4671984014 ENCODE Processing Pipeline 850de43f2c033de40dd44d5f0d1e7cd7 https://www.encodeproject.org/files/ENCFF081SMO/@@download/ENCFF081SMO.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF971FVW bigWig signal p-value ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF986MVN 1320986804 ENCODE Processing Pipeline e0b45f4879ab88725e1c51e18cb25701 https://www.encodeproject.org/files/ENCFF971FVW/@@download/ENCFF971FVW.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF882BOJ bigWig fold change over control ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF986MVN 1331953328 ENCODE Processing Pipeline caf54a5a0bec35e496631a280079ea6e https://www.encodeproject.org/files/ENCFF882BOJ/@@download/ENCFF882BOJ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF489VNZ bigWig signal p-value ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF081SMO 1085253030 ENCODE Processing Pipeline 30c99ab7e4cba575d7cdb39b3b0aa7b1 https://www.encodeproject.org/files/ENCFF489VNZ/@@download/ENCFF489VNZ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF141GEQ bigWig signal p-value ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF081SMO, ENCFF581ZJL, ENCFF986MVN 1906919339 ENCODE Processing Pipeline b75552d86600125658d7bac252039e75 https://www.encodeproject.org/files/ENCFF141GEQ/@@download/ENCFF141GEQ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF665NJZ bigWig fold change over control ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF081SMO 1185169214 ENCODE Processing Pipeline d20f429e672fdb4d1aaa1949e6c8233b https://www.encodeproject.org/files/ENCFF665NJZ/@@download/ENCFF665NJZ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF646ILI bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF081SMO 6364084 ENCODE Processing Pipeline 2b4099828aa88a5b17f6459ebd04cc47 https://www.encodeproject.org/files/ENCFF646ILI/@@download/ENCFF646ILI.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF915YAW bigWig fold change over control ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF081SMO, ENCFF581ZJL, ENCFF986MVN 2237998226 ENCODE Processing Pipeline f5effcfb7aaf1d89a4ad863063d7303b https://www.encodeproject.org/files/ENCFF915YAW/@@download/ENCFF915YAW.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF591FNP bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF081SMO, ENCFF581ZJL, ENCFF986MVN 7188067 ENCODE Processing Pipeline af9d66f57dfa9f9e7dd32fc5e5899fc2 https://www.encodeproject.org/files/ENCFF591FNP/@@download/ENCFF591FNP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF847QJY bigBed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF591FNP 10956465 ENCODE Processing Pipeline a23a1b207d8e36072a7489d75dbe5060 https://www.encodeproject.org/files/ENCFF847QJY/@@download/ENCFF847QJY.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF414CUZ bed narrowPeak conservative idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF111ZUY, ENCFF591FNP, ENCFF646ILI 44292 ENCODE Processing Pipeline 4c3c7d7efff6dd377ae7343888e9f958 https://www.encodeproject.org/files/ENCFF414CUZ/@@download/ENCFF414CUZ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF946KIR bigBed narrowPeak conservative idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF414CUZ 149009 ENCODE Processing Pipeline db80cdd70d7e0c211e05caa09f65ccf1 https://www.encodeproject.org/files/ENCFF946KIR/@@download/ENCFF946KIR.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF111ZUY bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF986MVN 6725810 ENCODE Processing Pipeline dae84b855bb6d50384574cdcf6723666 https://www.encodeproject.org/files/ENCFF111ZUY/@@download/ENCFF111ZUY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF321QBL bigBed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF111ZUY 11097801 ENCODE Processing Pipeline 954da401d84686adb555e5e329f0d9b1 https://www.encodeproject.org/files/ENCFF321QBL/@@download/ENCFF321QBL.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF539GPJ bigBed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF646ILI 11053666 ENCODE Processing Pipeline 919a0773e05dd51700024dc4d395fa7a https://www.encodeproject.org/files/ENCFF539GPJ/@@download/ENCFF539GPJ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF691FCP bigBed narrowPeak optimal idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF394IKH 205796 ENCODE Processing Pipeline e61760cbb5240ba82cd23eb101c48042 https://www.encodeproject.org/files/ENCFF691FCP/@@download/ENCFF691FCP.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF394IKH bed narrowPeak optimal idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF111ZUY, ENCFF591FNP, ENCFF646ILI 77678 ENCODE Processing Pipeline 765224a8c1770ecdee379605d59b3503 https://www.encodeproject.org/files/ENCFF394IKH/@@download/ENCFF394IKH.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF912XZY bam unfiltered alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF637DCS, ENCFF643CGH, ENCFF813FAX 5405268599 ENCODE Processing Pipeline 2f7e3780e014b05d47b5f220a133ab5e https://www.encodeproject.org/files/ENCFF912XZY/@@download/ENCFF912XZY.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF189DCP bam unfiltered alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428KVQ, ENCFF643CGH, ENCFF845NIC 6050004041 ENCODE Processing Pipeline 04814c23ef6da5e976d7cc198e818d5d https://www.encodeproject.org/files/ENCFF189DCP/@@download/ENCFF189DCP.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF066FOE bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF637DCS, ENCFF643CGH, ENCFF813FAX 4676140388 ENCODE Processing Pipeline 676685a7e76ecb50597ae36d5508a6fa https://www.encodeproject.org/files/ENCFF066FOE/@@download/ENCFF066FOE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF731WSZ bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428KVQ, ENCFF643CGH, ENCFF845NIC 5288478708 ENCODE Processing Pipeline aa722ece7bfbd2143015031894d9e674 https://www.encodeproject.org/files/ENCFF731WSZ/@@download/ENCFF731WSZ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF035NLK bigWig signal p-value ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF731WSZ, ENCFF910IKB 1390492083 ENCODE Processing Pipeline 954a6f3db4ed81443f7ad15a1865b10a https://www.encodeproject.org/files/ENCFF035NLK/@@download/ENCFF035NLK.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF470UJV bigWig signal p-value ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF066FOE, ENCFF227IZS 1211979532 ENCODE Processing Pipeline 3c4145eddf0617cbef8953f289593b9b https://www.encodeproject.org/files/ENCFF470UJV/@@download/ENCFF470UJV.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF580ZDG bigWig signal p-value ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF066FOE, ENCFF227IZS, ENCFF731WSZ, ENCFF910IKB 2076313360 ENCODE Processing Pipeline 10a53d0533a701e9d3f49bf07acb151e https://www.encodeproject.org/files/ENCFF580ZDG/@@download/ENCFF580ZDG.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF131QKR bigWig fold change over control ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF731WSZ, ENCFF910IKB 1336191245 ENCODE Processing Pipeline 60a1587c9e6b7aa482f6112930d28ffb https://www.encodeproject.org/files/ENCFF131QKR/@@download/ENCFF131QKR.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF096XRH bigWig fold change over control ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF066FOE, ENCFF227IZS 1147282024 ENCODE Processing Pipeline e561cbdb44166d85b5c969e2f6870963 https://www.encodeproject.org/files/ENCFF096XRH/@@download/ENCFF096XRH.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF622AKD bigWig fold change over control ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF066FOE, ENCFF227IZS, ENCFF731WSZ, ENCFF910IKB 2207367187 ENCODE Processing Pipeline 0ae9a79058d369dd4e9338bc39ebc2e5 https://www.encodeproject.org/files/ENCFF622AKD/@@download/ENCFF622AKD.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF466SJL bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF731WSZ, ENCFF910IKB 6567394 ENCODE Processing Pipeline 95916278dc296b1023b4f6614b98353f https://www.encodeproject.org/files/ENCFF466SJL/@@download/ENCFF466SJL.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF642MOM bigBed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF466SJL 11111212 ENCODE Processing Pipeline 5079c6071a6092183c252ac12973b63f https://www.encodeproject.org/files/ENCFF642MOM/@@download/ENCFF642MOM.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF217XDF bigBed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF218HXP 10967056 ENCODE Processing Pipeline 30efd8c70c2a12f89ce5247eab56cc83 https://www.encodeproject.org/files/ENCFF217XDF/@@download/ENCFF217XDF.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF007LEG bed narrowPeak conservative idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF218HXP, ENCFF419RSJ, ENCFF466SJL, ENCFF727TIW 43949 ENCODE Processing Pipeline bd0c474d0fbc16625c3def6754e4384c https://www.encodeproject.org/files/ENCFF007LEG/@@download/ENCFF007LEG.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF727TIW bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF066FOE, ENCFF227IZS 6199715 ENCODE Processing Pipeline fa1275e74c8deb36314bf1099a85a4d1 https://www.encodeproject.org/files/ENCFF727TIW/@@download/ENCFF727TIW.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF218HXP bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF066FOE, ENCFF227IZS, ENCFF731WSZ, ENCFF910IKB 7174554 ENCODE Processing Pipeline 842c01e72e7c2737628d1f72182768fb https://www.encodeproject.org/files/ENCFF218HXP/@@download/ENCFF218HXP.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF014KUI bed narrowPeak optimal idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF218HXP, ENCFF419RSJ, ENCFF466SJL, ENCFF727TIW 78281 ENCODE Processing Pipeline 21b4afdf9dc4444e03516f090a066414 https://www.encodeproject.org/files/ENCFF014KUI/@@download/ENCFF014KUI.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF190INC bigBed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF727TIW 11063195 ENCODE Processing Pipeline d12517e574270cfd37210ea4e9255b28 https://www.encodeproject.org/files/ENCFF190INC/@@download/ENCFF190INC.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF741GCX bigBed narrowPeak conservative idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF007LEG 151586 ENCODE Processing Pipeline ea91388f0948b5134010edc875bec41d https://www.encodeproject.org/files/ENCFF741GCX/@@download/ENCFF741GCX.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF305CJI bigBed narrowPeak optimal idr thresholded peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF014KUI 210538 ENCODE Processing Pipeline 24894c53c598d56b9ef272d9e93970be https://www.encodeproject.org/files/ENCFF305CJI/@@download/ENCFF305CJI.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF459BFW bam unfiltered alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 100 ENCFF340VHI, ENCFF710XSY, ENCFF807MUK 2687617010 ENCODE Processing Pipeline 6c29a8578d66814e0bbaa2425f74fb8a https://www.encodeproject.org/files/ENCFF459BFW/@@download/ENCFF459BFW.bam hg19 released low read depth ENCFF222SHU bam unfiltered alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 100 ENCFF139VNK, ENCFF705WPL, ENCFF807MUK 3216907793 ENCODE Processing Pipeline 9c97cc249627100e57054be71debef60 https://www.encodeproject.org/files/ENCFF222SHU/@@download/ENCFF222SHU.bam hg19 released low read depth ENCFF340VHI fastq reads ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF710XSY 1172560713 Michael Snyder, Stanford 7ecc7b161ef03a6d7c498a65ee04133b SRA:SRR5111926 https://www.encodeproject.org/files/ENCFF340VHI/@@download/ENCFF340VHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF710XSY fastq reads ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF340VHI 1209175070 Michael Snyder, Stanford 4a10100abec7690d7503b80129cd084d SRA:SRR5111926 https://www.encodeproject.org/files/ENCFF710XSY/@@download/ENCFF710XSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF139VNK fastq reads ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF705WPL 1454870537 Michael Snyder, Stanford 4503c514a64699e39937041970e137c0 SRA:SRR5111927 https://www.encodeproject.org/files/ENCFF139VNK/@@download/ENCFF139VNK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF705WPL fastq reads ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF139VNK 1422221497 Michael Snyder, Stanford 5102dadb8baa706793dd4805f7bd0457 SRA:SRR5111927 https://www.encodeproject.org/files/ENCFF705WPL/@@download/ENCFF705WPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF943WPZ bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 100 ENCFF340VHI, ENCFF710XSY, ENCFF807MUK 2327103816 ENCODE Processing Pipeline 987702e26b88ff990d70f259f2ffcd23 https://www.encodeproject.org/files/ENCFF943WPZ/@@download/ENCFF943WPZ.bam hg19 released low read depth ENCFF239DXH bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 100 ENCFF139VNK, ENCFF705WPL, ENCFF807MUK 2737771975 ENCODE Processing Pipeline 7e9b3237d0d92cb271978403b753a0ca https://www.encodeproject.org/files/ENCFF239DXH/@@download/ENCFF239DXH.bam hg19 released low read depth ENCFF300PWL bigWig signal p-value ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF239DXH, ENCFF581ZJL 1014291836 ENCODE Processing Pipeline 164768b2d1353493bd2a51bd3c873fa8 https://www.encodeproject.org/files/ENCFF300PWL/@@download/ENCFF300PWL.bigWig hg19 released low read depth ENCFF086OSM bigWig signal p-value ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF943WPZ 837163985 ENCODE Processing Pipeline 1cd140ffa8697ec15a378fc302fe2f9b https://www.encodeproject.org/files/ENCFF086OSM/@@download/ENCFF086OSM.bigWig hg19 released low read depth ENCFF210WIF bigWig signal p-value ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF239DXH, ENCFF581ZJL, ENCFF943WPZ 1634658567 ENCODE Processing Pipeline 7ddf453f4c654c2a660efe44a7de6242 https://www.encodeproject.org/files/ENCFF210WIF/@@download/ENCFF210WIF.bigWig hg19 released low read depth ENCFF066GLS bigWig fold change over control ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF239DXH, ENCFF581ZJL 921467069 ENCODE Processing Pipeline 73ad6dcb0c7b8ba8cf606491564732d2 https://www.encodeproject.org/files/ENCFF066GLS/@@download/ENCFF066GLS.bigWig hg19 released low read depth ENCFF938CSV bigWig fold change over control ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF943WPZ 814057051 ENCODE Processing Pipeline 6b5e48f3780a7f88f83843ddec452e5e https://www.encodeproject.org/files/ENCFF938CSV/@@download/ENCFF938CSV.bigWig hg19 released low read depth ENCFF231QPU bigWig fold change over control ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF239DXH, ENCFF581ZJL, ENCFF943WPZ 1761370773 ENCODE Processing Pipeline 8ae21eb6660e4255ec5adc2c275105b2 https://www.encodeproject.org/files/ENCFF231QPU/@@download/ENCFF231QPU.bigWig hg19 released low read depth ENCFF674FOQ bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF239DXH, ENCFF581ZJL 6613524 ENCODE Processing Pipeline 68b5c4aee6f13205eba0cc76e6b34593 https://www.encodeproject.org/files/ENCFF674FOQ/@@download/ENCFF674FOQ.bed.gz hg19 released low read depth ENCFF235FNK bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF239DXH, ENCFF581ZJL, ENCFF943WPZ 7244029 ENCODE Processing Pipeline 9badfc32837ff8bfaac8d89424f31cba https://www.encodeproject.org/files/ENCFF235FNK/@@download/ENCFF235FNK.bed.gz hg19 released low read depth ENCFF328OKA bigBed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF674FOQ 13205291 ENCODE Processing Pipeline 43dcaf1cb74309d6b48d6e6bb40ce2de https://www.encodeproject.org/files/ENCFF328OKA/@@download/ENCFF328OKA.bigBed hg19 released low read depth ENCFF874QPZ bigBed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF338NAH 13174495 ENCODE Processing Pipeline 94a5b3303783bcdd1f87fce3f4b7e0b4 https://www.encodeproject.org/files/ENCFF874QPZ/@@download/ENCFF874QPZ.bigBed hg19 released low read depth ENCFF071XJV bigBed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF235FNK 12946062 ENCODE Processing Pipeline 589a351dc423d0137b58d5e23f79f201 https://www.encodeproject.org/files/ENCFF071XJV/@@download/ENCFF071XJV.bigBed hg19 released low read depth ENCFF338NAH bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF943WPZ 6424347 ENCODE Processing Pipeline a0e6904c4853be483cc4109cec75962b https://www.encodeproject.org/files/ENCFF338NAH/@@download/ENCFF338NAH.bed.gz hg19 released low read depth ENCFF949DRZ bam unfiltered alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 100 ENCFF139VNK, ENCFF643CGH, ENCFF705WPL 3220934712 ENCODE Processing Pipeline cffa314aa166abd8bdb0eda51f636c0e https://www.encodeproject.org/files/ENCFF949DRZ/@@download/ENCFF949DRZ.bam GRCh38 released low read depth ENCFF608FVU bam unfiltered alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 100 ENCFF340VHI, ENCFF643CGH, ENCFF710XSY 2690686850 ENCODE Processing Pipeline 4a54df6c05b0d1c57d7961a9a645db9c https://www.encodeproject.org/files/ENCFF608FVU/@@download/ENCFF608FVU.bam GRCh38 released low read depth ENCFF530UEA bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 100 ENCFF340VHI, ENCFF643CGH, ENCFF710XSY 2328187559 ENCODE Processing Pipeline 33a0d391a881b3f8d4fa9f09194acd91 https://www.encodeproject.org/files/ENCFF530UEA/@@download/ENCFF530UEA.bam GRCh38 released low read depth ENCFF437UWB bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 100 ENCFF139VNK, ENCFF643CGH, ENCFF705WPL 2738955274 ENCODE Processing Pipeline bab04e0a09c61bb552c00d92c160d03b https://www.encodeproject.org/files/ENCFF437UWB/@@download/ENCFF437UWB.bam GRCh38 released low read depth ENCFF719ZSH bigWig signal p-value ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF437UWB, ENCFF910IKB 866283584 ENCODE Processing Pipeline 38623c62f03035f97adc4e1e9e1e20e2 https://www.encodeproject.org/files/ENCFF719ZSH/@@download/ENCFF719ZSH.bigWig GRCh38 released low read depth ENCFF886TDI bigWig signal p-value ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF530UEA 869541527 ENCODE Processing Pipeline 9a49e99a425741d1ca3e0aef361fc4f9 https://www.encodeproject.org/files/ENCFF886TDI/@@download/ENCFF886TDI.bigWig GRCh38 released low read depth ENCFF863LOZ bigWig signal p-value ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF437UWB, ENCFF530UEA, ENCFF910IKB 1668878115 ENCODE Processing Pipeline f49101ec583862f7e5c1645ccb418de9 https://www.encodeproject.org/files/ENCFF863LOZ/@@download/ENCFF863LOZ.bigWig GRCh38 released low read depth ENCFF753ABR bigWig fold change over control ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF437UWB, ENCFF910IKB 905524600 ENCODE Processing Pipeline 1d9adc1daad428df7968ea30195a8f52 https://www.encodeproject.org/files/ENCFF753ABR/@@download/ENCFF753ABR.bigWig GRCh38 released low read depth ENCFF924PYI bigWig fold change over control ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF530UEA 814607484 ENCODE Processing Pipeline 6253159040dee6b872bcd278ec03d4ec https://www.encodeproject.org/files/ENCFF924PYI/@@download/ENCFF924PYI.bigWig GRCh38 released low read depth ENCFF595VMB bigWig fold change over control ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF437UWB, ENCFF530UEA, ENCFF910IKB 1761959639 ENCODE Processing Pipeline 79a31ed0145b25b37bdd86509e17598d https://www.encodeproject.org/files/ENCFF595VMB/@@download/ENCFF595VMB.bigWig GRCh38 released low read depth ENCFF056XZH bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF437UWB, ENCFF530UEA, ENCFF910IKB 7229581 ENCODE Processing Pipeline e45d991eb36013ae2a8925b21f28e85a https://www.encodeproject.org/files/ENCFF056XZH/@@download/ENCFF056XZH.bed.gz GRCh38 released low read depth ENCFF489TBT bigBed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF056XZH 12962411 ENCODE Processing Pipeline d15ece821d5bce263e7e8b37de4b7f5f https://www.encodeproject.org/files/ENCFF489TBT/@@download/ENCFF489TBT.bigBed GRCh38 released low read depth ENCFF417SCW bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF437UWB, ENCFF910IKB 6483812 ENCODE Processing Pipeline 7705a328b6d10e6e54b76e6f1d028d3f https://www.encodeproject.org/files/ENCFF417SCW/@@download/ENCFF417SCW.bed.gz GRCh38 released low read depth ENCFF745PQT bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF530UEA 6313784 ENCODE Processing Pipeline 3f0c6b3c3d9bc21c056b850a3413da4c https://www.encodeproject.org/files/ENCFF745PQT/@@download/ENCFF745PQT.bed.gz GRCh38 released low read depth ENCFF204JKX bigBed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF417SCW 13194777 ENCODE Processing Pipeline cdf6f041982ff1fe4cc29967fe199ce4 https://www.encodeproject.org/files/ENCFF204JKX/@@download/ENCFF204JKX.bigBed GRCh38 released low read depth ENCFF936AFN bigBed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF745PQT 13211961 ENCODE Processing Pipeline f8c3dc3cdf5a83426fc5fc38b265cdd0 https://www.encodeproject.org/files/ENCFF936AFN/@@download/ENCFF936AFN.bigBed GRCh38 released low read depth ENCFF317RVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF594KPG 999202 ENCODE Processing Pipeline 52c5c5662d44b46140f9026916a6f828 https://www.encodeproject.org/files/ENCFF317RVQ/@@download/ENCFF317RVQ.bigBed GRCh38 released low read depth ENCFF594KPG bed narrowPeak conservative idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF056XZH, ENCFF417SCW, ENCFF419RSJ, ENCFF745PQT 370146 ENCODE Processing Pipeline c74b7f4b0ef067d037295ce82b74a579 https://www.encodeproject.org/files/ENCFF594KPG/@@download/ENCFF594KPG.bed.gz GRCh38 released low read depth ENCFF158FUG bed narrowPeak optimal idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF056XZH, ENCFF417SCW, ENCFF419RSJ, ENCFF745PQT 435320 ENCODE Processing Pipeline 7ac60df853db86986c8c15d8e9875565 https://www.encodeproject.org/files/ENCFF158FUG/@@download/ENCFF158FUG.bed.gz GRCh38 released low read depth ENCFF528NXU bigBed narrowPeak optimal idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF158FUG 1148303 ENCODE Processing Pipeline 380752efbbe681b923440e457a7daa23 https://www.encodeproject.org/files/ENCFF528NXU/@@download/ENCFF528NXU.bigBed GRCh38 released low read depth ENCFF969DLL bigBed narrowPeak conservative idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF739UMP 616170 ENCODE Processing Pipeline f11b9cad9264cf9172275117e9caeb3a https://www.encodeproject.org/files/ENCFF969DLL/@@download/ENCFF969DLL.bigBed hg19 released low read depth ENCFF157UUF bed narrowPeak optimal idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF235FNK, ENCFF338NAH, ENCFF674FOQ 360420 ENCODE Processing Pipeline f149fb690dd6079819477e00024ce227 https://www.encodeproject.org/files/ENCFF157UUF/@@download/ENCFF157UUF.bed.gz hg19 released low read depth ENCFF739UMP bed narrowPeak conservative idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF235FNK, ENCFF338NAH, ENCFF674FOQ 297237 ENCODE Processing Pipeline ae1c7cdfdbb5cd15b1bfc698e6f18bd4 https://www.encodeproject.org/files/ENCFF739UMP/@@download/ENCFF739UMP.bed.gz hg19 released low read depth ENCFF320PSC bigBed narrowPeak optimal idr thresholded peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF157UUF 708695 ENCODE Processing Pipeline c6ea7c7549f8be12fdd4afc0d7db85b7 https://www.encodeproject.org/files/ENCFF320PSC/@@download/ENCFF320PSC.bigBed hg19 released low read depth ENCFF962BKF bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF807MUK 8055490215 ENCODE Processing Pipeline e5f4d7eb4949351fd3fac8d62d64f4e3 https://www.encodeproject.org/files/ENCFF962BKF/@@download/ENCFF962BKF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF210STE bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF807MUK 7893452627 ENCODE Processing Pipeline add403092f46221cb4e3e9bf20b335ee https://www.encodeproject.org/files/ENCFF210STE/@@download/ENCFF210STE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002DOM fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHO 3639528371 Michael Snyder, Stanford 5275f9997915a36a672a90a21c47d459 SRA:SRR5111144 https://www.encodeproject.org/files/ENCFF002DOM/@@download/ENCFF002DOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002DOQ fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHP 3794926700 Michael Snyder, Stanford 045ed16a9a8b11d09261cc1a31d0cce4 SRA:SRR5111145 https://www.encodeproject.org/files/ENCFF002DOQ/@@download/ENCFF002DOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EHO fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOM 3672693055 Michael Snyder, Stanford 30b356df62555bfc0e66187158bbdc59 SRA:SRR5111144 https://www.encodeproject.org/files/ENCFF002EHO/@@download/ENCFF002EHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EHP fastq reads ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DOQ 3778113984 Michael Snyder, Stanford 33c0a0a8f310b5a44f32d56b0f94841b SRA:SRR5111145 https://www.encodeproject.org/files/ENCFF002EHP/@@download/ENCFF002EHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF621AIX bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF807MUK 6457320830 ENCODE Processing Pipeline eaf974bbfe570893c9c49213fde0e7b8 https://www.encodeproject.org/files/ENCFF621AIX/@@download/ENCFF621AIX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF571DSD bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF807MUK 6575817140 ENCODE Processing Pipeline f42789153bc585b8f23b56b92d97a776 https://www.encodeproject.org/files/ENCFF571DSD/@@download/ENCFF571DSD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF781UCF bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 1418969832 ENCODE Processing Pipeline be34ba8fe326b754a8998cfa4817f867 https://www.encodeproject.org/files/ENCFF781UCF/@@download/ENCFF781UCF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF477YRC bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF571DSD, ENCFF621AIX, ENCFF941TZZ 2496162097 ENCODE Processing Pipeline 090d6694f9c5797b7c4176fb0b586e0d https://www.encodeproject.org/files/ENCFF477YRC/@@download/ENCFF477YRC.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF400HCL bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 1531784333 ENCODE Processing Pipeline def49cda0d6ed9ca58a80e3e040173d0 https://www.encodeproject.org/files/ENCFF400HCL/@@download/ENCFF400HCL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF744DJH bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF571DSD, ENCFF621AIX, ENCFF941TZZ 7270364 ENCODE Processing Pipeline 9ec6ed9eff390e53570363f5a3c9d5d1 https://www.encodeproject.org/files/ENCFF744DJH/@@download/ENCFF744DJH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF763CTD bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 1786079926 ENCODE Processing Pipeline 082b13f8f9698334ff4867d0653fcaaa https://www.encodeproject.org/files/ENCFF763CTD/@@download/ENCFF763CTD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF577TNC bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF790EAG 13328584 ENCODE Processing Pipeline 0a39827b2ab08f383548413db071b860 https://www.encodeproject.org/files/ENCFF577TNC/@@download/ENCFF577TNC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF631FWH bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF744DJH 13313842 ENCODE Processing Pipeline fa1bf50dac7be4eb26e670fcf853a6f6 https://www.encodeproject.org/files/ENCFF631FWH/@@download/ENCFF631FWH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF958FPB bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 1939364048 ENCODE Processing Pipeline 6f07cdbed8ca05418771e389d71578e5 https://www.encodeproject.org/files/ENCFF958FPB/@@download/ENCFF958FPB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF484ZSZ bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF571DSD, ENCFF621AIX, ENCFF941TZZ 2530435438 ENCODE Processing Pipeline c27fe7630d66ff42cac22e8ebc1909b3 https://www.encodeproject.org/files/ENCFF484ZSZ/@@download/ENCFF484ZSZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF432JWQ bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 6777932 ENCODE Processing Pipeline b76707c57c3f129259925cd947b1f208 https://www.encodeproject.org/files/ENCFF432JWQ/@@download/ENCFF432JWQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF511CIZ bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF432JWQ 13365835 ENCODE Processing Pipeline 362c313747f3d0587963d6eddb7bd6f5 https://www.encodeproject.org/files/ENCFF511CIZ/@@download/ENCFF511CIZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF790EAG bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 7075209 ENCODE Processing Pipeline 57175cbb3e3b259b17307f4ba23ad295 https://www.encodeproject.org/files/ENCFF790EAG/@@download/ENCFF790EAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF856PTQ bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF643CGH 8064142487 ENCODE Processing Pipeline 061c3d8b11cd2c3819947e2f462e3775 https://www.encodeproject.org/files/ENCFF856PTQ/@@download/ENCFF856PTQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF530LAJ bam unfiltered alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF643CGH 7903914701 ENCODE Processing Pipeline be586ae8bd1a572c12f65b54913b8898 https://www.encodeproject.org/files/ENCFF530LAJ/@@download/ENCFF530LAJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF360OZT bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF643CGH 6468833600 ENCODE Processing Pipeline f15323978e463e2513ae85d3189c56a8 https://www.encodeproject.org/files/ENCFF360OZT/@@download/ENCFF360OZT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF856SJL bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF643CGH 6595427591 ENCODE Processing Pipeline fb8fa5971520eb8227c0c55612c5be68 https://www.encodeproject.org/files/ENCFF856SJL/@@download/ENCFF856SJL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF614EDF bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF856SJL, ENCFF879YMO 1395309424 ENCODE Processing Pipeline 5dfb00106025068704f1db81e71deafd https://www.encodeproject.org/files/ENCFF614EDF/@@download/ENCFF614EDF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF156PLT bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF360OZT, ENCFF574BGV, ENCFF879YMO 1937565863 ENCODE Processing Pipeline 574e616b628178e37884c9754ee59cd3 https://www.encodeproject.org/files/ENCFF156PLT/@@download/ENCFF156PLT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF428OOG bigWig signal p-value ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF360OZT, ENCFF574BGV, ENCFF856SJL, ENCFF879YMO 1958158077 ENCODE Processing Pipeline 9688f048172f929d1bdf62f726a7a1a5 https://www.encodeproject.org/files/ENCFF428OOG/@@download/ENCFF428OOG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF944RRZ bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF856SJL, ENCFF879YMO 1533743250 ENCODE Processing Pipeline 4b1a70e72ec7bf783e707a94a6e0ebee https://www.encodeproject.org/files/ENCFF944RRZ/@@download/ENCFF944RRZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF603CPL bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF360OZT, ENCFF574BGV, ENCFF879YMO 1935216775 ENCODE Processing Pipeline 302139a53e2fb322e877f6d8547feca8 https://www.encodeproject.org/files/ENCFF603CPL/@@download/ENCFF603CPL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF676UXN bigWig fold change over control ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF360OZT, ENCFF574BGV, ENCFF856SJL, ENCFF879YMO 2530655757 ENCODE Processing Pipeline db09a43eb3ba7d4a575e7f048d214f41 https://www.encodeproject.org/files/ENCFF676UXN/@@download/ENCFF676UXN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF644SHD bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF856SJL, ENCFF879YMO 6632119 ENCODE Processing Pipeline bcb97f9f7d7f2c71d6653a23e668537e https://www.encodeproject.org/files/ENCFF644SHD/@@download/ENCFF644SHD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF448FLQ bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF360OZT, ENCFF574BGV, ENCFF879YMO 7006217 ENCODE Processing Pipeline cac33ef8586ebeb04d48c0bf200cb3d4 https://www.encodeproject.org/files/ENCFF448FLQ/@@download/ENCFF448FLQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF743AQR bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF644SHD 11243141 ENCODE Processing Pipeline c00023da46e8c7ebf0dcef0cd2cf052c https://www.encodeproject.org/files/ENCFF743AQR/@@download/ENCFF743AQR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF345SXC bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF360OZT, ENCFF574BGV, ENCFF856SJL, ENCFF879YMO 7257418 ENCODE Processing Pipeline 1b3c4307c32edbdcd05f540fe81938ce https://www.encodeproject.org/files/ENCFF345SXC/@@download/ENCFF345SXC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF337FSM bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF345SXC 13324564 ENCODE Processing Pipeline d06da3a860265bf06978fbc49d26597a https://www.encodeproject.org/files/ENCFF337FSM/@@download/ENCFF337FSM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF164WOB bigBed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF448FLQ 13326141 ENCODE Processing Pipeline baf4aa572061f1870bf2ee7b2fa18f8a https://www.encodeproject.org/files/ENCFF164WOB/@@download/ENCFF164WOB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF580TAE bed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF345SXC, ENCFF419RSJ, ENCFF448FLQ, ENCFF644SHD 198618 ENCODE Processing Pipeline fa53b5218d5fa59a707dfa4f329a5521 https://www.encodeproject.org/files/ENCFF580TAE/@@download/ENCFF580TAE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF447PDB bigBed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF580TAE 449380 ENCODE Processing Pipeline 28e277235e01f963bdbde778bf763ee5 https://www.encodeproject.org/files/ENCFF447PDB/@@download/ENCFF447PDB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF676BIG bed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF345SXC, ENCFF419RSJ, ENCFF448FLQ, ENCFF644SHD 309628 ENCODE Processing Pipeline aee22b6dbe0fd94f525c3b4981d7326d https://www.encodeproject.org/files/ENCFF676BIG/@@download/ENCFF676BIG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF820GYH bigBed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF676BIG 632044 ENCODE Processing Pipeline caa73c53d5f5bc7d81d144dcd38f6ea1 https://www.encodeproject.org/files/ENCFF820GYH/@@download/ENCFF820GYH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF273BVT bed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF432JWQ, ENCFF744DJH, ENCFF790EAG 253776 ENCODE Processing Pipeline 723ae98f692a0545c08fab0660c49ebe https://www.encodeproject.org/files/ENCFF273BVT/@@download/ENCFF273BVT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF163DWT bed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF432JWQ, ENCFF744DJH, ENCFF790EAG 156679 ENCODE Processing Pipeline d2d1c783a92bc1da03cb8299e1838a8b https://www.encodeproject.org/files/ENCFF163DWT/@@download/ENCFF163DWT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF667SDH bigBed narrowPeak optimal idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF273BVT 452183 ENCODE Processing Pipeline 7f8ac1b7640f5673e9140c6c316c9c83 https://www.encodeproject.org/files/ENCFF667SDH/@@download/ENCFF667SDH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF471CVE bigBed narrowPeak conservative idr thresholded peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF163DWT 321707 ENCODE Processing Pipeline ccc43bbd37e6796567b46bd37f832d9f https://www.encodeproject.org/files/ENCFF471CVE/@@download/ENCFF471CVE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF391FDK bam unfiltered alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF698ICA, ENCFF807MUK, ENCFF839LPL 5022137187 ENCODE Processing Pipeline c6b9b36aa56bd852a172a651be4c3daf https://www.encodeproject.org/files/ENCFF391FDK/@@download/ENCFF391FDK.bam hg19 released low read depth ENCFF394HFT bam unfiltered alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF400NVU, ENCFF807MUK, ENCFF920SBM 4016296514 ENCODE Processing Pipeline 9c964b79a5b8a9ecd21d71dba8a50c9f https://www.encodeproject.org/files/ENCFF394HFT/@@download/ENCFF394HFT.bam hg19 released low read depth ENCFF839LPL fastq reads ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF698ICA 2434855785 Michael Snyder, Stanford 27e65b059226dbf9f18f1aad91678ada SRA:SRR5111543 https://www.encodeproject.org/files/ENCFF839LPL/@@download/ENCFF839LPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF698ICA fastq reads ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF839LPL 2475345280 Michael Snyder, Stanford 78222056a75c1fb596a6eeaa195593e1 SRA:SRR5111543 https://www.encodeproject.org/files/ENCFF698ICA/@@download/ENCFF698ICA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF920SBM fastq reads ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF400NVU 1861855451 Michael Snyder, Stanford 58c585a0026f264702f65e5f32a4d5ba SRA:SRR5111542 https://www.encodeproject.org/files/ENCFF920SBM/@@download/ENCFF920SBM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF400NVU fastq reads ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF920SBM 1898649414 Michael Snyder, Stanford b93eac550784691589041df86a252ec9 SRA:SRR5111542 https://www.encodeproject.org/files/ENCFF400NVU/@@download/ENCFF400NVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF839GLQ bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF698ICA, ENCFF807MUK, ENCFF839LPL 4288292713 ENCODE Processing Pipeline 4ce0e20104fbb50578aef291abcc147d https://www.encodeproject.org/files/ENCFF839GLQ/@@download/ENCFF839GLQ.bam hg19 released low read depth ENCFF138LNW bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF400NVU, ENCFF807MUK, ENCFF920SBM 3492763395 ENCODE Processing Pipeline 6c3630e808f2c33d70183d85203e41d3 https://www.encodeproject.org/files/ENCFF138LNW/@@download/ENCFF138LNW.bam hg19 released low read depth ENCFF366YKO bigWig signal p-value ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF138LNW, ENCFF581ZJL 1062459959 ENCODE Processing Pipeline f472b58df583ed3831d7a23973895c55 https://www.encodeproject.org/files/ENCFF366YKO/@@download/ENCFF366YKO.bigWig hg19 released low read depth ENCFF129MIK bigWig signal p-value ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF839GLQ 1097097473 ENCODE Processing Pipeline 2b5075ae160d0df5dd6712118bb23f04 https://www.encodeproject.org/files/ENCFF129MIK/@@download/ENCFF129MIK.bigWig hg19 released low read depth ENCFF518XWE bigWig signal p-value ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF138LNW, ENCFF581ZJL, ENCFF839GLQ 1774645709 ENCODE Processing Pipeline 1abcbb415d4456d2a603b1c4e8cad249 https://www.encodeproject.org/files/ENCFF518XWE/@@download/ENCFF518XWE.bigWig hg19 released low read depth ENCFF555CHY bigWig fold change over control ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF138LNW, ENCFF581ZJL 1001654834 ENCODE Processing Pipeline 5356ca26fbd5c071657de285c418b64c https://www.encodeproject.org/files/ENCFF555CHY/@@download/ENCFF555CHY.bigWig hg19 released low read depth ENCFF910GGT bigWig fold change over control ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF839GLQ 1019176065 ENCODE Processing Pipeline 43d9123b62b8bcb6a25bddde26b8238a https://www.encodeproject.org/files/ENCFF910GGT/@@download/ENCFF910GGT.bigWig hg19 released low read depth ENCFF647MSS bigWig fold change over control ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF138LNW, ENCFF581ZJL, ENCFF839GLQ 1903451733 ENCODE Processing Pipeline 0d53a1d124354427019c1f43e5661279 https://www.encodeproject.org/files/ENCFF647MSS/@@download/ENCFF647MSS.bigWig hg19 released low read depth ENCFF157PBO bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF138LNW, ENCFF581ZJL 7197429 ENCODE Processing Pipeline 0af8663cfafe4ae8f1f42901e348933e https://www.encodeproject.org/files/ENCFF157PBO/@@download/ENCFF157PBO.bed.gz hg19 released low read depth ENCFF109VMO bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF839GLQ 7254397 ENCODE Processing Pipeline 946487180b55d5e1e6a68781d9572952 https://www.encodeproject.org/files/ENCFF109VMO/@@download/ENCFF109VMO.bed.gz hg19 released low read depth ENCFF656WXD bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF138LNW, ENCFF581ZJL, ENCFF839GLQ 7295050 ENCODE Processing Pipeline 15bc7c82e626a458d3a5a1cbc17cce62 https://www.encodeproject.org/files/ENCFF656WXD/@@download/ENCFF656WXD.bed.gz hg19 released low read depth ENCFF151EKY bigBed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF157PBO 12015998 ENCODE Processing Pipeline 8c8c51d150ce171e92718bd713c7f37e https://www.encodeproject.org/files/ENCFF151EKY/@@download/ENCFF151EKY.bigBed hg19 released low read depth ENCFF852NAG bigBed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF656WXD 11487429 ENCODE Processing Pipeline 280751a29ebe28c8b1c3d4a4b0d53bfc https://www.encodeproject.org/files/ENCFF852NAG/@@download/ENCFF852NAG.bigBed hg19 released low read depth ENCFF522VPA bigBed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF109VMO 11660550 ENCODE Processing Pipeline 3a38045a641af7f513681f4d851f1736 https://www.encodeproject.org/files/ENCFF522VPA/@@download/ENCFF522VPA.bigBed hg19 released low read depth ENCFF692COR bigBed narrowPeak optimal idr thresholded peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF248IWJ 1619061 ENCODE Processing Pipeline f763df8aa4e0dc1b3ce4b1b206cdc2cb https://www.encodeproject.org/files/ENCFF692COR/@@download/ENCFF692COR.bigBed hg19 released low read depth ENCFF248IWJ bed narrowPeak optimal idr thresholded peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF109VMO, ENCFF157PBO, ENCFF656WXD 771608 ENCODE Processing Pipeline 5483386eae2504c8c9ca1e71d470c6a3 https://www.encodeproject.org/files/ENCFF248IWJ/@@download/ENCFF248IWJ.bed.gz hg19 released low read depth ENCFF536MUP bam unfiltered alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF400NVU, ENCFF643CGH, ENCFF920SBM 4018045031 ENCODE Processing Pipeline ab6c2d993dc9ee7d001eb9aa6ce9ed7e https://www.encodeproject.org/files/ENCFF536MUP/@@download/ENCFF536MUP.bam GRCh38 released low read depth ENCFF334RNJ bam unfiltered alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF643CGH, ENCFF698ICA, ENCFF839LPL 5022146731 ENCODE Processing Pipeline 2609e79d9688035200bd0e60053882b5 https://www.encodeproject.org/files/ENCFF334RNJ/@@download/ENCFF334RNJ.bam GRCh38 released low read depth ENCFF438GBD bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF400NVU, ENCFF643CGH, ENCFF920SBM 3498115872 ENCODE Processing Pipeline b6415a44ce28929e9aa00764490fc7a5 https://www.encodeproject.org/files/ENCFF438GBD/@@download/ENCFF438GBD.bam GRCh38 released low read depth ENCFF601CVJ bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF643CGH, ENCFF698ICA, ENCFF839LPL 4297172506 ENCODE Processing Pipeline 2f8e42b8ff22fe36d4517bc4bc8f8c71 https://www.encodeproject.org/files/ENCFF601CVJ/@@download/ENCFF601CVJ.bam GRCh38 released low read depth ENCFF471XED bigWig signal p-value ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF438GBD, ENCFF910IKB 989705367 ENCODE Processing Pipeline 96835f2da93f2ed994c29b57c9a96d5a https://www.encodeproject.org/files/ENCFF471XED/@@download/ENCFF471XED.bigWig GRCh38 released low read depth ENCFF855XHJ bigWig signal p-value ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF601CVJ 998996074 ENCODE Processing Pipeline 6d8ac8393969d485a4a8cfb6b11155dd https://www.encodeproject.org/files/ENCFF855XHJ/@@download/ENCFF855XHJ.bigWig GRCh38 released low read depth ENCFF178AKL bigWig signal p-value ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227IZS, ENCFF438GBD, ENCFF601CVJ, ENCFF910IKB 1632787882 ENCODE Processing Pipeline aded0cf482d6cb5900b97025b8f0fdc1 https://www.encodeproject.org/files/ENCFF178AKL/@@download/ENCFF178AKL.bigWig GRCh38 released low read depth ENCFF721DBO bigWig fold change over control ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF438GBD, ENCFF910IKB 994932022 ENCODE Processing Pipeline abdea0c19bc5669929c3b270ff6395bd https://www.encodeproject.org/files/ENCFF721DBO/@@download/ENCFF721DBO.bigWig GRCh38 released low read depth ENCFF662UVZ bigWig fold change over control ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF601CVJ 1033022894 ENCODE Processing Pipeline a3fecc21ac5d30049aa7c8fd94bf86f8 https://www.encodeproject.org/files/ENCFF662UVZ/@@download/ENCFF662UVZ.bigWig GRCh38 released low read depth ENCFF321FZQ bigWig fold change over control ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227IZS, ENCFF438GBD, ENCFF601CVJ, ENCFF910IKB 1905247328 ENCODE Processing Pipeline bad0d245ab32c2cc1285e525eeaee8c9 https://www.encodeproject.org/files/ENCFF321FZQ/@@download/ENCFF321FZQ.bigWig GRCh38 released low read depth ENCFF547VDF bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF438GBD, ENCFF910IKB 7104038 ENCODE Processing Pipeline d43a3f6ae0d1a9715fb9d72539877e67 https://www.encodeproject.org/files/ENCFF547VDF/@@download/ENCFF547VDF.bed.gz GRCh38 released low read depth ENCFF714KCD bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF601CVJ 7122462 ENCODE Processing Pipeline 75f79b02ff8028b92a6793ceaa149be1 https://www.encodeproject.org/files/ENCFF714KCD/@@download/ENCFF714KCD.bed.gz GRCh38 released low read depth ENCFF516BJP bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227IZS, ENCFF438GBD, ENCFF601CVJ, ENCFF910IKB 7200636 ENCODE Processing Pipeline 58c7e607e48ad9107d75d25fb9fd3249 https://www.encodeproject.org/files/ENCFF516BJP/@@download/ENCFF516BJP.bed.gz GRCh38 released low read depth ENCFF589FFR bigBed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF547VDF 11930747 ENCODE Processing Pipeline a5123f5018280d97c4ad96b1d2ad924d https://www.encodeproject.org/files/ENCFF589FFR/@@download/ENCFF589FFR.bigBed GRCh38 released low read depth ENCFF748IRQ bigBed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF714KCD 11515730 ENCODE Processing Pipeline 2f96f91d43bf61014c629b0817d0de6a https://www.encodeproject.org/files/ENCFF748IRQ/@@download/ENCFF748IRQ.bigBed GRCh38 released low read depth ENCFF012ZCC bigBed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF516BJP 11382864 ENCODE Processing Pipeline 1a82f00a35399537614636d0322f1bf2 https://www.encodeproject.org/files/ENCFF012ZCC/@@download/ENCFF012ZCC.bigBed GRCh38 released low read depth ENCFF285MBX bed narrowPeak optimal idr thresholded peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF516BJP, ENCFF547VDF, ENCFF714KCD 745128 ENCODE Processing Pipeline b66ab75e232ac34877a053faf9db5195 https://www.encodeproject.org/files/ENCFF285MBX/@@download/ENCFF285MBX.bed.gz GRCh38 released low read depth ENCFF130WVT bigBed narrowPeak optimal idr thresholded peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF285MBX 1578419 ENCODE Processing Pipeline 7624d1f26fb3f0a86a30282ce8227a18 https://www.encodeproject.org/files/ENCFF130WVT/@@download/ENCFF130WVT.bigBed GRCh38 released low read depth ENCFF108ESB fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF895VJN 2292752401 Michael Snyder, Stanford 0ab360c09155b2fd514ee2ec0199428e https://www.encodeproject.org/files/ENCFF108ESB/@@download/ENCFF108ESB.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF917BAA fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF803CCE 2769046561 Michael Snyder, Stanford 38fa0d20fcc56f008e89493c27c6907e https://www.encodeproject.org/files/ENCFF917BAA/@@download/ENCFF917BAA.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF895VJN fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF108ESB 2167477551 Michael Snyder, Stanford a7da081afe0cec7eb1f24831a1fe6d9f https://www.encodeproject.org/files/ENCFF895VJN/@@download/ENCFF895VJN.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF803CCE fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF917BAA 2399945430 Michael Snyder, Stanford 949f5b144b317e8fc03f554f576b53c1 https://www.encodeproject.org/files/ENCFF803CCE/@@download/ENCFF803CCE.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF389WFJ bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF803CCE, ENCFF917BAA 4254401310 ENCODE Processing Pipeline a0eef9e45ea20e15714dc01e35d61ba3 https://www.encodeproject.org/files/ENCFF389WFJ/@@download/ENCFF389WFJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF508JKO bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF803CCE, ENCFF917BAA 1789971113 ENCODE Processing Pipeline 05e4cf55fd7c10bcb18240e5d22f0155 https://www.encodeproject.org/files/ENCFF508JKO/@@download/ENCFF508JKO.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF467JSA bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF108ESB, ENCFF643CGH, ENCFF895VJN 4016726565 ENCODE Processing Pipeline 30624cd8614737d5cdd40c0b673671d7 https://www.encodeproject.org/files/ENCFF467JSA/@@download/ENCFF467JSA.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF260TPL bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF108ESB, ENCFF643CGH, ENCFF895VJN 2171384744 ENCODE Processing Pipeline 4ef35c6e0df53cf910fa94e5bdccf549 https://www.encodeproject.org/files/ENCFF260TPL/@@download/ENCFF260TPL.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF841KTI bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF803CCE, ENCFF807MUK, ENCFF917BAA 1788975295 ENCODE Processing Pipeline eb1761e761ed6026c547cfbd953a27da https://www.encodeproject.org/files/ENCFF841KTI/@@download/ENCFF841KTI.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF911AAQ bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF108ESB, ENCFF807MUK, ENCFF895VJN 2169983205 ENCODE Processing Pipeline 15b6f8b327b0fbf49a8231de09d6bcc2 https://www.encodeproject.org/files/ENCFF911AAQ/@@download/ENCFF911AAQ.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF160MAF bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF803CCE, ENCFF807MUK, ENCFF917BAA 4258046310 ENCODE Processing Pipeline c90439fa0fe4cbaebae7bed0b82f6f6b https://www.encodeproject.org/files/ENCFF160MAF/@@download/ENCFF160MAF.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF140VPY bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF108ESB, ENCFF807MUK, ENCFF895VJN 4017228955 ENCODE Processing Pipeline 6ffee28924de144c7286e6de42eb8038 https://www.encodeproject.org/files/ENCFF140VPY/@@download/ENCFF140VPY.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF625EFW bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF260TPL, ENCFF910IKB 899053070 ENCODE Processing Pipeline f9ce4a07d16560845f802d3ed5acc133 https://www.encodeproject.org/files/ENCFF625EFW/@@download/ENCFF625EFW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF377FIA bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF508JKO 805826573 ENCODE Processing Pipeline 38ce2e1b6556afc1f556f10bb2da3f13 https://www.encodeproject.org/files/ENCFF377FIA/@@download/ENCFF377FIA.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF889TVL bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF260TPL, ENCFF508JKO, ENCFF910IKB 1464621796 ENCODE Processing Pipeline fafa8eb4bdd6f1af82c1733ee07aa9f1 https://www.encodeproject.org/files/ENCFF889TVL/@@download/ENCFF889TVL.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF228OTZ bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF260TPL, ENCFF910IKB 901260879 ENCODE Processing Pipeline 76587eba8baee5f33e7f6003930c78d0 https://www.encodeproject.org/files/ENCFF228OTZ/@@download/ENCFF228OTZ.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF297BBY bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF260TPL, ENCFF910IKB 6545880 ENCODE Processing Pipeline ecb3b774158a3ed4fa8f89be9ab1c0cf https://www.encodeproject.org/files/ENCFF297BBY/@@download/ENCFF297BBY.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF217TTM bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF968SJR 13276912 ENCODE Processing Pipeline 2ddaee3680ba55e25b7b8d4e3c0d4fc9 https://www.encodeproject.org/files/ENCFF217TTM/@@download/ENCFF217TTM.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF948EFF bed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF297BBY, ENCFF419RSJ, ENCFF772VMB, ENCFF968SJR 443840 ENCODE Processing Pipeline b91e029e0c17876d30a37a7a6a8e4ae8 https://www.encodeproject.org/files/ENCFF948EFF/@@download/ENCFF948EFF.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF582WRU bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF260TPL, ENCFF508JKO, ENCFF910IKB 1692562072 ENCODE Processing Pipeline 2340c727b68179092311ed2eb4aa1a15 https://www.encodeproject.org/files/ENCFF582WRU/@@download/ENCFF582WRU.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF008MHU bed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF297BBY, ENCFF419RSJ, ENCFF772VMB, ENCFF968SJR 378702 ENCODE Processing Pipeline 2b662e23fae0b1785e64ef798df9df47 https://www.encodeproject.org/files/ENCFF008MHU/@@download/ENCFF008MHU.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF850FFL bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF508JKO 804286665 ENCODE Processing Pipeline 173eedf171cdb2c32906ea680450dd88 https://www.encodeproject.org/files/ENCFF850FFL/@@download/ENCFF850FFL.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF968SJR bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF508JKO 6530864 ENCODE Processing Pipeline e60cf973255237ad6f389e8936f6ae95 https://www.encodeproject.org/files/ENCFF968SJR/@@download/ENCFF968SJR.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF772VMB bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF260TPL, ENCFF508JKO, ENCFF910IKB 7114056 ENCODE Processing Pipeline 749724467041e27955ce2f5abcf7286d https://www.encodeproject.org/files/ENCFF772VMB/@@download/ENCFF772VMB.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF652MWU bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF297BBY 13258508 ENCODE Processing Pipeline 6049adacc147f05224b4b9d3988ca1fa https://www.encodeproject.org/files/ENCFF652MWU/@@download/ENCFF652MWU.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF440AYR bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF772VMB 13150395 ENCODE Processing Pipeline 89cdf4f9e3eeac0300a6a578de3d9368 https://www.encodeproject.org/files/ENCFF440AYR/@@download/ENCFF440AYR.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF049XLD bigBed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF008MHU 824792 ENCODE Processing Pipeline 4fe7ec96221dd6c1620e18e0a2e81f0c https://www.encodeproject.org/files/ENCFF049XLD/@@download/ENCFF049XLD.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF110XQH bigBed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF948EFF 928078 ENCODE Processing Pipeline b16dfadda592aad2fde7d2c607f94735 https://www.encodeproject.org/files/ENCFF110XQH/@@download/ENCFF110XQH.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF668IYO bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF358UWQ 13080164 ENCODE Processing Pipeline feb415e2fb649108bbed81d4237ee8e2 https://www.encodeproject.org/files/ENCFF668IYO/@@download/ENCFF668IYO.bigBed hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF153RYT bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF132KBU, ENCFF735BSJ, ENCFF807MUK 2152108007 ENCODE Processing Pipeline c1eb708bca609426aea41305a64e547a https://www.encodeproject.org/files/ENCFF153RYT/@@download/ENCFF153RYT.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF624XXH bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF230XQX 13181232 ENCODE Processing Pipeline 3bd64af73090f5400413ec5bc607fc84 https://www.encodeproject.org/files/ENCFF624XXH/@@download/ENCFF624XXH.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF567YTM bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF972SUH 5979041 ENCODE Processing Pipeline 204ab26c8a76d7322c8ccf161f55f6ea https://www.encodeproject.org/files/ENCFF567YTM/@@download/ENCFF567YTM.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF753THE bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF648RLH, ENCFF910IKB 797957458 ENCODE Processing Pipeline 485d07328a55a22dc32716a1dbc62e5a https://www.encodeproject.org/files/ENCFF753THE/@@download/ENCFF753THE.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF648RLH bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF921OKO, ENCFF944WBR 1589571144 ENCODE Processing Pipeline 5398d3ee37c21af2a07836b5c23a4fdc https://www.encodeproject.org/files/ENCFF648RLH/@@download/ENCFF648RLH.bam GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF921OKO fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF944WBR 1065646216 Michael Snyder, Stanford 4bda61858651fe91f6b8ecf3a997cbb9 https://www.encodeproject.org/files/ENCFF921OKO/@@download/ENCFF921OKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF739WRB bigBed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF352HGW 778885 ENCODE Processing Pipeline 2eac33c6abe7066ef4d255bedd7d1faf https://www.encodeproject.org/files/ENCFF739WRB/@@download/ENCFF739WRB.bigBed hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF352HGW bed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF252JHJ, ENCFF358UWQ, ENCFF401MRM 359284 ENCODE Processing Pipeline e24abce2eb93185b8fab54ab59d5f784 https://www.encodeproject.org/files/ENCFF352HGW/@@download/ENCFF352HGW.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF010GOB bigBed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF666FOX 684722 ENCODE Processing Pipeline 2cc9f4565e8e91d9879f202b4bd20d2d https://www.encodeproject.org/files/ENCFF010GOB/@@download/ENCFF010GOB.bigBed hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF666FOX bed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF252JHJ, ENCFF358UWQ, ENCFF401MRM 301236 ENCODE Processing Pipeline 0181207574d73e6300a080476e8136b2 https://www.encodeproject.org/files/ENCFF666FOX/@@download/ENCFF666FOX.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF440HAH bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF401MRM 13181715 ENCODE Processing Pipeline ac12845f91c7dc3fcc9dfc4a790427de https://www.encodeproject.org/files/ENCFF440HAH/@@download/ENCFF440HAH.bigBed hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF109IHM bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF252JHJ 13175336 ENCODE Processing Pipeline 18bc02afebc8a85c748c01236aa72908 https://www.encodeproject.org/files/ENCFF109IHM/@@download/ENCFF109IHM.bigBed hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF401MRM bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF024YPR, ENCFF051LWI, ENCFF581ZJL, ENCFF970IIN 6881000 ENCODE Processing Pipeline ac8d8aeb5f2e86a57f15e917cc5ca947 https://www.encodeproject.org/files/ENCFF401MRM/@@download/ENCFF401MRM.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF358UWQ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF024YPR, ENCFF051LWI 5981773 ENCODE Processing Pipeline ca1bc3fdc58e3c336e9dd1a26d572ffe https://www.encodeproject.org/files/ENCFF358UWQ/@@download/ENCFF358UWQ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF252JHJ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF970IIN 6123031 ENCODE Processing Pipeline 723d9629d91b43ddfa993933a6ac000a https://www.encodeproject.org/files/ENCFF252JHJ/@@download/ENCFF252JHJ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF597TLR bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF024YPR, ENCFF051LWI, ENCFF581ZJL, ENCFF970IIN 1382378463 ENCODE Processing Pipeline 089438af0b864c5f289636ca2cfa4bf6 https://www.encodeproject.org/files/ENCFF597TLR/@@download/ENCFF597TLR.bigWig hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF504KWN bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF024YPR, ENCFF051LWI 613504474 ENCODE Processing Pipeline 2c51a4293a81ceb10e5ebe20b07d4ee8 https://www.encodeproject.org/files/ENCFF504KWN/@@download/ENCFF504KWN.bigWig hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF384CNQ bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF970IIN 697991030 ENCODE Processing Pipeline 641d5e11651f48ecd87f1f94efc45f88 https://www.encodeproject.org/files/ENCFF384CNQ/@@download/ENCFF384CNQ.bigWig hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF082YJG bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF024YPR, ENCFF051LWI, ENCFF581ZJL, ENCFF970IIN 1386561769 ENCODE Processing Pipeline 599f66f2583b0e26d2377186dfaae925 https://www.encodeproject.org/files/ENCFF082YJG/@@download/ENCFF082YJG.bigWig hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF400URY bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF024YPR, ENCFF051LWI 782580027 ENCODE Processing Pipeline 966ccad66e54cc0908ee8b8ddcf0af67 https://www.encodeproject.org/files/ENCFF400URY/@@download/ENCFF400URY.bigWig hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF214HFR bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF970IIN 885082823 ENCODE Processing Pipeline 2d961e64dddd73b32c97a7616e230778 https://www.encodeproject.org/files/ENCFF214HFR/@@download/ENCFF214HFR.bigWig hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF352YWR bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF807MUK, ENCFF921OKO, ENCFF944WBR 2206268735 ENCODE Processing Pipeline 53c4bf5e1c8cc525761d03fac14df9ad https://www.encodeproject.org/files/ENCFF352YWR/@@download/ENCFF352YWR.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF665NEW bigBed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF769WRU 786137 ENCODE Processing Pipeline cf493bebf2264a1428cafeb1f6bd653d https://www.encodeproject.org/files/ENCFF665NEW/@@download/ENCFF665NEW.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF769WRU bed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF020IMS, ENCFF230XQX, ENCFF419RSJ, ENCFF567YTM 363398 ENCODE Processing Pipeline b9825fab3cc6f4e6450fe0c9ad2e5411 https://www.encodeproject.org/files/ENCFF769WRU/@@download/ENCFF769WRU.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF990RYC bigBed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF553TQP 695698 ENCODE Processing Pipeline 4ffc8e80aefefba0f04ac591879a12d0 https://www.encodeproject.org/files/ENCFF990RYC/@@download/ENCFF990RYC.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF553TQP bed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF020IMS, ENCFF230XQX, ENCFF419RSJ, ENCFF567YTM 308131 ENCODE Processing Pipeline 7b06b7c00c01baff82dcc3385553b7f8 https://www.encodeproject.org/files/ENCFF553TQP/@@download/ENCFF553TQP.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF348GQQ bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF020IMS 13211440 ENCODE Processing Pipeline ee51a3af360e29dff5d45149504ccdf7 https://www.encodeproject.org/files/ENCFF348GQQ/@@download/ENCFF348GQQ.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF943RPX bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF567YTM 13089765 ENCODE Processing Pipeline f1bb8220ba678667e5637ce037dcbba6 https://www.encodeproject.org/files/ENCFF943RPX/@@download/ENCFF943RPX.bigBed GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF020IMS bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF648RLH, ENCFF910IKB, ENCFF972SUH 6898252 ENCODE Processing Pipeline da300ee37cdc1647d3e392e81a2ac376 https://www.encodeproject.org/files/ENCFF020IMS/@@download/ENCFF020IMS.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF230XQX bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF648RLH, ENCFF910IKB 6113164 ENCODE Processing Pipeline c6381f407ff1a83d6698a894657ab887 https://www.encodeproject.org/files/ENCFF230XQX/@@download/ENCFF230XQX.bed.gz GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF550TLL bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF648RLH, ENCFF910IKB, ENCFF972SUH 1367623683 ENCODE Processing Pipeline 42bce5aef5d4053d7b9ed1332a09d261 https://www.encodeproject.org/files/ENCFF550TLL/@@download/ENCFF550TLL.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF632EWE bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF972SUH 590882262 ENCODE Processing Pipeline 03cbcb0ac15dd9ba1e9a329f2f8c3c15 https://www.encodeproject.org/files/ENCFF632EWE/@@download/ENCFF632EWE.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF007NSI bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF648RLH, ENCFF910IKB 694787302 ENCODE Processing Pipeline 40e3ec109c0de0aa862ae83dcd957f7d https://www.encodeproject.org/files/ENCFF007NSI/@@download/ENCFF007NSI.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF813LHY bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF648RLH, ENCFF910IKB, ENCFF972SUH 1326139102 ENCODE Processing Pipeline eb624eed3829a721988aac456497622a https://www.encodeproject.org/files/ENCFF813LHY/@@download/ENCFF813LHY.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF140YXW bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF972SUH 796422041 ENCODE Processing Pipeline e034921c6238281132ec80b9ac3673a6 https://www.encodeproject.org/files/ENCFF140YXW/@@download/ENCFF140YXW.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF768AVQ bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF921OKO, ENCFF944WBR 2206480018 ENCODE Processing Pipeline 190533194768e6a9217f97fcce4f07a4 https://www.encodeproject.org/files/ENCFF768AVQ/@@download/ENCFF768AVQ.bam GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF972SUH bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF132KBU, ENCFF643CGH, ENCFF735BSJ 1378661538 ENCODE Processing Pipeline 38df4377b00011dcbabddab34ada9d78 https://www.encodeproject.org/files/ENCFF972SUH/@@download/ENCFF972SUH.bam GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF950HYX bam unfiltered alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF132KBU, ENCFF643CGH, ENCFF735BSJ 2151389253 ENCODE Processing Pipeline f7bc0406ae32be619df9337192ccd55b https://www.encodeproject.org/files/ENCFF950HYX/@@download/ENCFF950HYX.bam GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF970IIN bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF807MUK, ENCFF921OKO, ENCFF944WBR 1588793668 ENCODE Processing Pipeline 88d70478987f96688d3458589ae4f95a https://www.encodeproject.org/files/ENCFF970IIN/@@download/ENCFF970IIN.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF024YPR bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF132KBU, ENCFF735BSJ, ENCFF807MUK 1378127841 ENCODE Processing Pipeline fa947ab1a2e53243edd1a0619782fde3 https://www.encodeproject.org/files/ENCFF024YPR/@@download/ENCFF024YPR.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF944WBR fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF921OKO 1031779817 Michael Snyder, Stanford d798912d1066fcf21dcf45a8b32a0b11 https://www.encodeproject.org/files/ENCFF944WBR/@@download/ENCFF944WBR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF735BSJ fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF132KBU 1097531347 Michael Snyder, Stanford 79670ff7efb809172524426bae31223e https://www.encodeproject.org/files/ENCFF735BSJ/@@download/ENCFF735BSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF132KBU fastq reads ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF735BSJ 1061529757 Michael Snyder, Stanford 5d1a15f933310daf33c0303f45c372c8 https://www.encodeproject.org/files/ENCFF132KBU/@@download/ENCFF132KBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF497LFR bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF260KBY 13275630 ENCODE Processing Pipeline e914eae5d0f2a866db02d0f4eec8b154 https://www.encodeproject.org/files/ENCFF497LFR/@@download/ENCFF497LFR.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF337FJT bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF911AAQ 969501533 ENCODE Processing Pipeline fe8047b71244ab81d86cee115279b7fa https://www.encodeproject.org/files/ENCFF337FJT/@@download/ENCFF337FJT.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF145VYG bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF911AAQ 897711243 ENCODE Processing Pipeline c29cef7bbc7f6d5f86665865507199a6 https://www.encodeproject.org/files/ENCFF145VYG/@@download/ENCFF145VYG.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF150XCG bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF834TUP, ENCFF841KTI 886716522 ENCODE Processing Pipeline aeb7b6ba3746fb2a721db0e82a693126 https://www.encodeproject.org/files/ENCFF150XCG/@@download/ENCFF150XCG.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF452ZKJ bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF841KTI, ENCFF911AAQ 1431483542 ENCODE Processing Pipeline f1d47284ec94a3d93f499d8ee2951ae0 https://www.encodeproject.org/files/ENCFF452ZKJ/@@download/ENCFF452ZKJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF752PLO bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF834TUP, ENCFF841KTI 832411630 ENCODE Processing Pipeline 80d68f3b45f69be8a156e149313bbba1 https://www.encodeproject.org/files/ENCFF752PLO/@@download/ENCFF752PLO.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF723ILY bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF841KTI, ENCFF911AAQ 1703089881 ENCODE Processing Pipeline f4297957e7fc48009362db1473791a96 https://www.encodeproject.org/files/ENCFF723ILY/@@download/ENCFF723ILY.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF199PBO bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF911AAQ 6463924 ENCODE Processing Pipeline c12f8fc6733ef74ba731a112632d4e12 https://www.encodeproject.org/files/ENCFF199PBO/@@download/ENCFF199PBO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF721GUV bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF834TUP, ENCFF841KTI 6499363 ENCODE Processing Pipeline bf67c0603423efddd5ece0d9967c5b30 https://www.encodeproject.org/files/ENCFF721GUV/@@download/ENCFF721GUV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF260KBY bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF841KTI, ENCFF911AAQ 7195753 ENCODE Processing Pipeline 0b6c06ceff1c1865273eb87fb1543b64 https://www.encodeproject.org/files/ENCFF260KBY/@@download/ENCFF260KBY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF285ENJ bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF199PBO 13296601 ENCODE Processing Pipeline 6f9c8a2ca3922a1dd6cafd3fc8bac66f https://www.encodeproject.org/files/ENCFF285ENJ/@@download/ENCFF285ENJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF260XLM bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF721GUV 13210483 ENCODE Processing Pipeline 208145843764590254991bd6df838007 https://www.encodeproject.org/files/ENCFF260XLM/@@download/ENCFF260XLM.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF776ARH bed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF199PBO, ENCFF260KBY, ENCFF721GUV 360065 ENCODE Processing Pipeline 3fd6d5884717808bc6e7d03a8423362c https://www.encodeproject.org/files/ENCFF776ARH/@@download/ENCFF776ARH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF135FEB bigBed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF776ARH 800512 ENCODE Processing Pipeline 40f9eb282d6251cc2497900b2905304a https://www.encodeproject.org/files/ENCFF135FEB/@@download/ENCFF135FEB.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF106DAY bed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF199PBO, ENCFF260KBY, ENCFF721GUV 431592 ENCODE Processing Pipeline eebcfeb474d20d087492413655d9c57c https://www.encodeproject.org/files/ENCFF106DAY/@@download/ENCFF106DAY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF741ADC bigBed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF106DAY 914516 ENCODE Processing Pipeline 0f7e99b4a85f590e6576109e60dbf7e3 https://www.encodeproject.org/files/ENCFF741ADC/@@download/ENCFF741ADC.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF960MHJ bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF260TPL, ENCFF790TAN 898782910 ENCODE Processing Pipeline 0d7f9f721e330b94eaf119b8249e112c https://www.encodeproject.org/files/ENCFF960MHJ/@@download/ENCFF960MHJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF852NLH bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF260TPL, ENCFF508JKO, ENCFF712WXB, ENCFF790TAN 1671277139 ENCODE Processing Pipeline e473fd536ef91579fcd014c906d47d72 https://www.encodeproject.org/files/ENCFF852NLH/@@download/ENCFF852NLH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF626AVJ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF260TPL, ENCFF508JKO, ENCFF712WXB, ENCFF790TAN 7179353 ENCODE Processing Pipeline 4f87a8ef0e3b3d0e52f8a561ab7ea634 https://www.encodeproject.org/files/ENCFF626AVJ/@@download/ENCFF626AVJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF507MXA bigBed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF784XVN 797339 ENCODE Processing Pipeline 19d65a68b46b83a2a674ce9a1e8b8df1 https://www.encodeproject.org/files/ENCFF507MXA/@@download/ENCFF507MXA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF149VUU bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF260TPL, ENCFF790TAN 884089527 ENCODE Processing Pipeline f111bff837d7ece2d0ed8581f82bffa3 https://www.encodeproject.org/files/ENCFF149VUU/@@download/ENCFF149VUU.bigWig GRCh38 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF702TCQ bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF508JKO, ENCFF712WXB 849606128 ENCODE Processing Pipeline beb25012b4ba1680d14f4bd75828336d https://www.encodeproject.org/files/ENCFF702TCQ/@@download/ENCFF702TCQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF453DTP bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF508JKO, ENCFF712WXB 6521317 ENCODE Processing Pipeline 09d172ccf3834abca558f721c35347ed https://www.encodeproject.org/files/ENCFF453DTP/@@download/ENCFF453DTP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF325QPB bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF397EQE 13306316 ENCODE Processing Pipeline aced378ba14d883b722472b1600f4554 https://www.encodeproject.org/files/ENCFF325QPB/@@download/ENCFF325QPB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF107QWO bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF453DTP 13247760 ENCODE Processing Pipeline 43c8b9c9d468532686995ba60bc99ebe https://www.encodeproject.org/files/ENCFF107QWO/@@download/ENCFF107QWO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF256PVN bigWig signal p-value ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF260TPL, ENCFF508JKO, ENCFF712WXB, ENCFF790TAN 1394510376 ENCODE Processing Pipeline 02a02d4f72b0bca6dd05c6e6a40f129e https://www.encodeproject.org/files/ENCFF256PVN/@@download/ENCFF256PVN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF520HAX bigBed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF626AVJ 13263200 ENCODE Processing Pipeline df91fda79a5d0d77db69f55acfe7e87e https://www.encodeproject.org/files/ENCFF520HAX/@@download/ENCFF520HAX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF134JLR bed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF397EQE, ENCFF419RSJ, ENCFF453DTP, ENCFF626AVJ 418689 ENCODE Processing Pipeline 5a13794056dcab90483355bd68656432 https://www.encodeproject.org/files/ENCFF134JLR/@@download/ENCFF134JLR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF813QOS bigWig fold change over control ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF508JKO, ENCFF712WXB 832096133 ENCODE Processing Pipeline 89f467102b23880dfb397f4caef3c1d6 https://www.encodeproject.org/files/ENCFF813QOS/@@download/ENCFF813QOS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF397EQE bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF260TPL, ENCFF790TAN 6461796 ENCODE Processing Pipeline 9852f32c8ba230af66223b016559c9d2 https://www.encodeproject.org/files/ENCFF397EQE/@@download/ENCFF397EQE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF784XVN bed narrowPeak conservative idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF397EQE, ENCFF419RSJ, ENCFF453DTP, ENCFF626AVJ 355182 ENCODE Processing Pipeline 261ddf3d9be794ad514690cbc29de033 https://www.encodeproject.org/files/ENCFF784XVN/@@download/ENCFF784XVN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF648GYE bigBed narrowPeak optimal idr thresholded peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF134JLR 898367 ENCODE Processing Pipeline 73ea449d0730648287060f01323e5d4c https://www.encodeproject.org/files/ENCFF648GYE/@@download/ENCFF648GYE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF800GHL fastq reads ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF100YUK 7228531886 Michael Snyder, Stanford 2b6e0f5527827235fbc58c308dde4c62 SRA:SRR6212865 https://www.encodeproject.org/files/ENCFF800GHL/@@download/ENCFF800GHL.fastq.gz Illumina HiSeq 4000 /files/ENCFF848NLY/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF100YUK fastq reads ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF800GHL 7975164469 Michael Snyder, Stanford b147381ebf4144dfb0e89be728a9a9ed SRA:SRR6212865 https://www.encodeproject.org/files/ENCFF100YUK/@@download/ENCFF100YUK.fastq.gz Illumina HiSeq 4000 /files/ENCFF592JZV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF161NZV bam unfiltered alignments ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF100YUK, ENCFF800GHL, ENCFF807MUK 12984846486 ENCODE Processing Pipeline f4dbe0828b0537ef5cf61600aef81933 https://www.encodeproject.org/files/ENCFF161NZV/@@download/ENCFF161NZV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF619UBW bam unfiltered alignments ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF100YUK, ENCFF643CGH, ENCFF800GHL 12983594359 ENCODE Processing Pipeline be528fcf794245cba4e36bbf6730ac71 https://www.encodeproject.org/files/ENCFF619UBW/@@download/ENCFF619UBW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF590YRR bam alignments ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF100YUK, ENCFF800GHL, ENCFF807MUK 7701434066 ENCODE Processing Pipeline 3d220a41c3ff3b9ff4a32e64f18445d0 https://www.encodeproject.org/files/ENCFF590YRR/@@download/ENCFF590YRR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF503UVW bam alignments ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF100YUK, ENCFF643CGH, ENCFF800GHL 7718144496 ENCODE Processing Pipeline c91381a75b7926be37a4bd1a55872eb1 https://www.encodeproject.org/files/ENCFF503UVW/@@download/ENCFF503UVW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF835QEO bigWig signal p-value ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF590YRR, ENCFF882RAK 1850927493 ENCODE Processing Pipeline 3c7d589a7fbb762f71760ca6c167dc12 https://www.encodeproject.org/files/ENCFF835QEO/@@download/ENCFF835QEO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF279POO bed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF590YRR, ENCFF882RAK 7170449 ENCODE Processing Pipeline 49b0fde64fd93714da5d66d6bf53f219 https://www.encodeproject.org/files/ENCFF279POO/@@download/ENCFF279POO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF021OTY bigWig fold change over control ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF590YRR, ENCFF882RAK 2180945472 ENCODE Processing Pipeline ccd58588c65535280dfc947e0d9384d9 https://www.encodeproject.org/files/ENCFF021OTY/@@download/ENCFF021OTY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF689ZNH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF279POO 434711 ENCODE Processing Pipeline f4ee2a8efd651a90cb1f2b82d4c60d57 https://www.encodeproject.org/files/ENCFF689ZNH/@@download/ENCFF689ZNH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF123OGU bigWig signal p-value ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF503UVW, ENCFF600VZB 1827044091 ENCODE Processing Pipeline 4736c8fa8b326d37bf54831ae03fdfbb https://www.encodeproject.org/files/ENCFF123OGU/@@download/ENCFF123OGU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF599OCP bigWig fold change over control ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF503UVW, ENCFF600VZB 2160671563 ENCODE Processing Pipeline 7d9d644873eba16b6d82cff92f52b038 https://www.encodeproject.org/files/ENCFF599OCP/@@download/ENCFF599OCP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565OBX bigBed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF279POO 11514063 ENCODE Processing Pipeline fdf7f647d47228c5e1a2e236455f0395 https://www.encodeproject.org/files/ENCFF565OBX/@@download/ENCFF565OBX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF117SXK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF689ZNH 811003 ENCODE Processing Pipeline 7b0836ebd9b6bd485125b9c2d46c6e89 https://www.encodeproject.org/files/ENCFF117SXK/@@download/ENCFF117SXK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF160ZSM bigBed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF066NBQ 11497697 ENCODE Processing Pipeline d3250808ee74895e278273d834dde033 https://www.encodeproject.org/files/ENCFF160ZSM/@@download/ENCFF160ZSM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF066NBQ bed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF503UVW, ENCFF600VZB 7151900 ENCODE Processing Pipeline abe96081cdb4ece2ed306af43e7a1e63 https://www.encodeproject.org/files/ENCFF066NBQ/@@download/ENCFF066NBQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF314SQB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF066NBQ, ENCFF419RSJ 424370 ENCODE Processing Pipeline 6a185a0a1794dd4433f81249818d3ddf https://www.encodeproject.org/files/ENCFF314SQB/@@download/ENCFF314SQB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF187AFC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF314SQB 798067 ENCODE Processing Pipeline 37dc44bca620a8a073716addaf0e8087 https://www.encodeproject.org/files/ENCFF187AFC/@@download/ENCFF187AFC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF097GJA fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF060XCR 888067411 Michael Snyder, Stanford 3a707aa56e523d0c2c85d99ce43e4105 https://www.encodeproject.org/files/ENCFF097GJA/@@download/ENCFF097GJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF849TLD/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF060XCR fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF097GJA 847623319 Michael Snyder, Stanford 84cf9d6d4e01437545c2e9c2da03abda https://www.encodeproject.org/files/ENCFF060XCR/@@download/ENCFF060XCR.fastq.gz Illumina HiSeq 2000 /files/ENCFF096CKY/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF865YLR fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF845UZE 1946745839 Michael Snyder, Stanford 36c7143c1fa22befa880df869496f1b5 https://www.encodeproject.org/files/ENCFF865YLR/@@download/ENCFF865YLR.fastq.gz Illumina HiSeq 2000 /files/ENCFF849TLD/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF845UZE fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF865YLR 1973394576 Michael Snyder, Stanford 7b3b4e708c148e4325def144e9900597 https://www.encodeproject.org/files/ENCFF845UZE/@@download/ENCFF845UZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF096CKY/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF446UOL bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF060XCR, ENCFF097GJA, ENCFF807MUK 1683551493 ENCODE Processing Pipeline 78652857ef0047824173c19033001169 https://www.encodeproject.org/files/ENCFF446UOL/@@download/ENCFF446UOL.bam hg19 archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF845MTL bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF807MUK, ENCFF845UZE, ENCFF865YLR 3429745486 ENCODE Processing Pipeline f16123501b41d0ace4e010652b4f0d14 https://www.encodeproject.org/files/ENCFF845MTL/@@download/ENCFF845MTL.bam hg19 archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF960ZID fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF096VXL 2327810208 Michael Snyder, Stanford b59b83dd77cb12d5c9506909db721bcc SRA:SRR6212908 https://www.encodeproject.org/files/ENCFF960ZID/@@download/ENCFF960ZID.fastq.gz Illumina HiSeq 4000 /files/ENCFF725WQM/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF096VXL fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF960ZID 2398620655 Michael Snyder, Stanford fb4a71ea7b7242813122a2330c940f64 SRA:SRR6212908 https://www.encodeproject.org/files/ENCFF096VXL/@@download/ENCFF096VXL.fastq.gz Illumina HiSeq 4000 /files/ENCFF768JTI/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF621NBR fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF230HNM 1702933378 Michael Snyder, Stanford e6a58c5dd40cf6ac64512b1bf89bcbff SRA:SRR6212907 https://www.encodeproject.org/files/ENCFF621NBR/@@download/ENCFF621NBR.fastq.gz Illumina HiSeq 4000 /files/ENCFF725WQM/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF230HNM fastq reads ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF621NBR 1753469814 Michael Snyder, Stanford 81bf40db506d5269661d6c9512446ee5 SRA:SRR6212907 https://www.encodeproject.org/files/ENCFF230HNM/@@download/ENCFF230HNM.fastq.gz Illumina HiSeq 4000 /files/ENCFF768JTI/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF632XPI bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 100 ENCFF230HNM, ENCFF621NBR, ENCFF807MUK 2601606091 ENCODE Processing Pipeline 96094db01007e34a1b1b62488159aa32 https://www.encodeproject.org/files/ENCFF632XPI/@@download/ENCFF632XPI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF923STH bam unfiltered alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 100 ENCFF230HNM, ENCFF621NBR, ENCFF807MUK 3268819207 ENCODE Processing Pipeline 64b5cdfae4a862972f337bbc83f4a967 https://www.encodeproject.org/files/ENCFF923STH/@@download/ENCFF923STH.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF402ILX bam unfiltered alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 100 ENCFF230HNM, ENCFF621NBR, ENCFF643CGH 3272209908 ENCODE Processing Pipeline 375e94fae2b6c636f248f8e8501c810c https://www.encodeproject.org/files/ENCFF402ILX/@@download/ENCFF402ILX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF285CII bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 100 ENCFF230HNM, ENCFF621NBR, ENCFF643CGH 2602940586 ENCODE Processing Pipeline cf7270c0dfac26167418a5dc25f04689 https://www.encodeproject.org/files/ENCFF285CII/@@download/ENCFF285CII.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF748QNI bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 100 ENCFF096VXL, ENCFF807MUK, ENCFF960ZID 3498764104 ENCODE Processing Pipeline e53309e28f49e5deb527411901d72907 https://www.encodeproject.org/files/ENCFF748QNI/@@download/ENCFF748QNI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF288DQV bam unfiltered alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 100 ENCFF096VXL, ENCFF807MUK, ENCFF960ZID 4410010376 ENCODE Processing Pipeline 439488f8545551783d59ff9a47b32d2f https://www.encodeproject.org/files/ENCFF288DQV/@@download/ENCFF288DQV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF276NMY bam unfiltered alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 100 ENCFF096VXL, ENCFF643CGH, ENCFF960ZID 4415232393 ENCODE Processing Pipeline 4866a8b9b64137f366bfea29481ebce1 https://www.encodeproject.org/files/ENCFF276NMY/@@download/ENCFF276NMY.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF096KBP bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 100 ENCFF096VXL, ENCFF643CGH, ENCFF960ZID 3500924225 ENCODE Processing Pipeline 53bd3818c473c706469d38fc367b42e7 https://www.encodeproject.org/files/ENCFF096KBP/@@download/ENCFF096KBP.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF135PAY bigWig signal p-value ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF591PYL, ENCFF748QNI 1131715631 ENCODE Processing Pipeline 8fee1cc7dcadd9b50c31beef96a66916 https://www.encodeproject.org/files/ENCFF135PAY/@@download/ENCFF135PAY.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF922ICQ bigWig signal p-value ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF591PYL, ENCFF632XPI 1024374924 ENCODE Processing Pipeline 986f7017405102fdbad31f24438beb9f https://www.encodeproject.org/files/ENCFF922ICQ/@@download/ENCFF922ICQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF166FMY bigWig signal p-value ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF591PYL, ENCFF632XPI, ENCFF748QNI 1282527233 ENCODE Processing Pipeline 2dbc6ac20f45d851b35dacc0f93963ab https://www.encodeproject.org/files/ENCFF166FMY/@@download/ENCFF166FMY.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF878PED bigWig fold change over control ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF591PYL, ENCFF748QNI 1212302902 ENCODE Processing Pipeline c1f3437bc6fdb7767520af1b390cbb92 https://www.encodeproject.org/files/ENCFF878PED/@@download/ENCFF878PED.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF243AWG bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF591PYL, ENCFF748QNI 6702271 ENCODE Processing Pipeline 48e73ba4a2edbd11ad5617c5bae35faa https://www.encodeproject.org/files/ENCFF243AWG/@@download/ENCFF243AWG.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF258HYJ bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF591PYL, ENCFF632XPI 6525547 ENCODE Processing Pipeline 0707452f5158f3676955c29043b9816f https://www.encodeproject.org/files/ENCFF258HYJ/@@download/ENCFF258HYJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF757JFR bigWig fold change over control ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF591PYL, ENCFF632XPI 987225514 ENCODE Processing Pipeline 4fb19fe5544e2a0c7e4024d1cccde8f2 https://www.encodeproject.org/files/ENCFF757JFR/@@download/ENCFF757JFR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF802GJA bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF591PYL, ENCFF632XPI, ENCFF748QNI 7225697 ENCODE Processing Pipeline 28a2fed7e3d9e6ceb65d3ffa54860502 https://www.encodeproject.org/files/ENCFF802GJA/@@download/ENCFF802GJA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF883PPB bigWig fold change over control ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF591PYL, ENCFF632XPI, ENCFF748QNI 1673659294 ENCODE Processing Pipeline 4ed3199f6f9248386e2d7df0f7da7c59 https://www.encodeproject.org/files/ENCFF883PPB/@@download/ENCFF883PPB.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF025TNU bigBed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF802GJA 13311399 ENCODE Processing Pipeline f66f2a3cf382946c43123661332017d4 https://www.encodeproject.org/files/ENCFF025TNU/@@download/ENCFF025TNU.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF246CGV bigBed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF243AWG 13357489 ENCODE Processing Pipeline 375ad71cc9afe6c606aa23c4537ab657 https://www.encodeproject.org/files/ENCFF246CGV/@@download/ENCFF246CGV.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF920NDY bigBed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF258HYJ 13398413 ENCODE Processing Pipeline 4cc9e989eeaeafee97802255a26cdd83 https://www.encodeproject.org/files/ENCFF920NDY/@@download/ENCFF920NDY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF633PGJ bed narrowPeak conservative idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF243AWG, ENCFF258HYJ, ENCFF802GJA 422002 ENCODE Processing Pipeline 3975b1a4f948fb5c2ab2b04a7c98b18d https://www.encodeproject.org/files/ENCFF633PGJ/@@download/ENCFF633PGJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF527SZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF320THV 920973 ENCODE Processing Pipeline 2914e2c59b9308f25127b1eff3df370f https://www.encodeproject.org/files/ENCFF527SZQ/@@download/ENCFF527SZQ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF508KDY bigBed narrowPeak conservative idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF633PGJ 880162 ENCODE Processing Pipeline 24175dbee911d882d73c172af85bd6f5 https://www.encodeproject.org/files/ENCFF508KDY/@@download/ENCFF508KDY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF320THV bed narrowPeak optimal idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF243AWG, ENCFF258HYJ, ENCFF802GJA 447479 ENCODE Processing Pipeline b709cb1dcaca3ca588904fc3e400b3da https://www.encodeproject.org/files/ENCFF320THV/@@download/ENCFF320THV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF833WNC bigWig signal p-value ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF096KBP, ENCFF652CFB 1080169656 ENCODE Processing Pipeline cce65e4c808a0377cd031676d147c360 https://www.encodeproject.org/files/ENCFF833WNC/@@download/ENCFF833WNC.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF337EVQ bigWig signal p-value ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF285CII, ENCFF652CFB 1029991936 ENCODE Processing Pipeline 83f68e06f6c3c44c787036befcc90cca https://www.encodeproject.org/files/ENCFF337EVQ/@@download/ENCFF337EVQ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF213LIJ bigWig signal p-value ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF096KBP, ENCFF285CII, ENCFF652CFB 1284467750 ENCODE Processing Pipeline 54e8199710dd1f90f15c60f6a688f3ad https://www.encodeproject.org/files/ENCFF213LIJ/@@download/ENCFF213LIJ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF841YHR bigWig fold change over control ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF096KBP, ENCFF285CII, ENCFF652CFB 1679404220 ENCODE Processing Pipeline 129b0336f9149c63041fcaa4fcfb8fcd https://www.encodeproject.org/files/ENCFF841YHR/@@download/ENCFF841YHR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF427MKM bigWig fold change over control ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF285CII, ENCFF652CFB 987323732 ENCODE Processing Pipeline 396acd7a4c19142fbc492d3504897b7f https://www.encodeproject.org/files/ENCFF427MKM/@@download/ENCFF427MKM.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF066TTG bigBed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF020YJO 13368094 ENCODE Processing Pipeline d9c4822850bd72a3894e038bbfbdd83b https://www.encodeproject.org/files/ENCFF066TTG/@@download/ENCFF066TTG.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF649HNW bigWig fold change over control ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF096KBP, ENCFF652CFB 1215186641 ENCODE Processing Pipeline ef0a5933430c478442cd6cc1bb0b2b4d https://www.encodeproject.org/files/ENCFF649HNW/@@download/ENCFF649HNW.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF020YJO bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF096KBP, ENCFF652CFB 6701620 ENCODE Processing Pipeline 650241c9f9b2fb917d23fe39ea675840 https://www.encodeproject.org/files/ENCFF020YJO/@@download/ENCFF020YJO.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF212MIH bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF285CII, ENCFF652CFB 6504626 ENCODE Processing Pipeline c429c7b562c8c57b30735c490b57d17a https://www.encodeproject.org/files/ENCFF212MIH/@@download/ENCFF212MIH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF141XEH bed narrowPeak conservative idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF020YJO, ENCFF212MIH, ENCFF419RSJ, ENCFF863QLQ 413747 ENCODE Processing Pipeline 2a39ea9a417129c5520dc913d26f942f https://www.encodeproject.org/files/ENCFF141XEH/@@download/ENCFF141XEH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF342RAN bigBed narrowPeak conservative idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF141XEH 873679 ENCODE Processing Pipeline c46d169b97fda4872cca0bdd1e8a717d https://www.encodeproject.org/files/ENCFF342RAN/@@download/ENCFF342RAN.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF863QLQ bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF096KBP, ENCFF285CII, ENCFF652CFB 7203273 ENCODE Processing Pipeline 87d454d48dee1b031ed4db893a839b83 https://www.encodeproject.org/files/ENCFF863QLQ/@@download/ENCFF863QLQ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF450TUL bigBed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF863QLQ 13299897 ENCODE Processing Pipeline f3f9cbf1800d95af9db930f52533688d https://www.encodeproject.org/files/ENCFF450TUL/@@download/ENCFF450TUL.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF045SYW bigBed narrowPeak optimal idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF431GJK 924448 ENCODE Processing Pipeline cedd5ec1b6e9f3c76e2b1342ab0d8957 https://www.encodeproject.org/files/ENCFF045SYW/@@download/ENCFF045SYW.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF716YKD bigBed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF212MIH 13391683 ENCODE Processing Pipeline 6eaa4fc569a74a800e7e554437d47402 https://www.encodeproject.org/files/ENCFF716YKD/@@download/ENCFF716YKD.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF431GJK bed narrowPeak optimal idr thresholded peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF020YJO, ENCFF212MIH, ENCFF419RSJ, ENCFF863QLQ 446273 ENCODE Processing Pipeline 07faf723ed3075a3081c4c8d9b173ccf https://www.encodeproject.org/files/ENCFF431GJK/@@download/ENCFF431GJK.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF252EVO fastq reads ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF945PBZ 3451366768 Michael Snyder, Stanford 8a26256bb3b6f93933fea8174e13e363 SRA:SRR6212706 https://www.encodeproject.org/files/ENCFF252EVO/@@download/ENCFF252EVO.fastq.gz Illumina HiSeq 4000 /files/ENCFF646GDJ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF945PBZ fastq reads ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF252EVO 3301776777 Michael Snyder, Stanford 619b62c94f330c76118a409a130087c7 SRA:SRR6212706 https://www.encodeproject.org/files/ENCFF945PBZ/@@download/ENCFF945PBZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF313OIF/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF098VEL bam unfiltered alignments ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF252EVO, ENCFF807MUK, ENCFF945PBZ 5954689884 ENCODE Processing Pipeline 36bb0b2d7468adb4bdb627c7977a3467 https://www.encodeproject.org/files/ENCFF098VEL/@@download/ENCFF098VEL.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF738UKW bam unfiltered alignments ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF252EVO, ENCFF643CGH, ENCFF945PBZ 5951801358 ENCODE Processing Pipeline f57f9f27e997357dc2d4c6b55b239407 https://www.encodeproject.org/files/ENCFF738UKW/@@download/ENCFF738UKW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF129PLZ bam alignments ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF252EVO, ENCFF807MUK, ENCFF945PBZ 2310900837 ENCODE Processing Pipeline f97efeff2508978305942203ab2c0eb1 https://www.encodeproject.org/files/ENCFF129PLZ/@@download/ENCFF129PLZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF916PDB bam alignments ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF252EVO, ENCFF643CGH, ENCFF945PBZ 2314620758 ENCODE Processing Pipeline 033dc7d8533f11ca9e8ec0f53ad5f327 https://www.encodeproject.org/files/ENCFF916PDB/@@download/ENCFF916PDB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF502NTA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF759UNB 915721 ENCODE Processing Pipeline 9d6ffb7a3854026c25a7d5c5b0658c64 https://www.encodeproject.org/files/ENCFF502NTA/@@download/ENCFF502NTA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF027ZPO bigWig signal p-value ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF129PLZ, ENCFF791LLR 1063082860 ENCODE Processing Pipeline 84e290886b7b509361df7cc3a5f1da9e https://www.encodeproject.org/files/ENCFF027ZPO/@@download/ENCFF027ZPO.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF750NEU bigBed narrowPeak peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF986TTQ 13403050 ENCODE Processing Pipeline 4602e3c31da78672727a2964e810510e https://www.encodeproject.org/files/ENCFF750NEU/@@download/ENCFF750NEU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF391HIC bigWig fold change over control ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF129PLZ, ENCFF791LLR 1102645885 ENCODE Processing Pipeline 5965559e3cadc1c0c47276cdb25885e5 https://www.encodeproject.org/files/ENCFF391HIC/@@download/ENCFF391HIC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF759UNB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF986TTQ 376524 ENCODE Processing Pipeline 6adf9242942455a2bee2ab9668001b7c https://www.encodeproject.org/files/ENCFF759UNB/@@download/ENCFF759UNB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF986TTQ bed narrowPeak peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF129PLZ, ENCFF791LLR 6397192 ENCODE Processing Pipeline bb05de6435d61b4c6f4b3e43f13f3bc5 https://www.encodeproject.org/files/ENCFF986TTQ/@@download/ENCFF986TTQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF458LYZ bigWig signal p-value ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF512QNP, ENCFF916PDB 969532839 ENCODE Processing Pipeline 9202cdd82a353596081f678daa536756 https://www.encodeproject.org/files/ENCFF458LYZ/@@download/ENCFF458LYZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF543CLZ bed narrowPeak peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF512QNP, ENCFF916PDB 6343886 ENCODE Processing Pipeline 2aca475912d9d18a70a3823c93ba5ac8 https://www.encodeproject.org/files/ENCFF543CLZ/@@download/ENCFF543CLZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF028RZP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF543CLZ 355437 ENCODE Processing Pipeline 6bd131c317b6b68999976d7bb9d91f99 https://www.encodeproject.org/files/ENCFF028RZP/@@download/ENCFF028RZP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF989RTL bigBed narrowPeak peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF543CLZ 13359264 ENCODE Processing Pipeline 72bbde707388f272e4c9fa45fda5e799 https://www.encodeproject.org/files/ENCFF989RTL/@@download/ENCFF989RTL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF757YCH bigWig fold change over control ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF512QNP, ENCFF916PDB 1082234378 ENCODE Processing Pipeline 917d7771836b8890169f987af86a94f3 https://www.encodeproject.org/files/ENCFF757YCH/@@download/ENCFF757YCH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF618UGO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF028RZP 892122 ENCODE Processing Pipeline 653911270f92cd0ce9ccc821f473be8f https://www.encodeproject.org/files/ENCFF618UGO/@@download/ENCFF618UGO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF074WTD fastq reads ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF784DME 2984193680 Michael Snyder, Stanford a3150f54b826db057d0393ab6f0a14de SRA:SRR6213066 https://www.encodeproject.org/files/ENCFF074WTD/@@download/ENCFF074WTD.fastq.gz Illumina HiSeq 4000 /files/ENCFF052ROO/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF784DME fastq reads ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF074WTD 3515072296 Michael Snyder, Stanford 5ffd2af80fe6783ab5ee4e8485d73dda SRA:SRR6213066 https://www.encodeproject.org/files/ENCFF784DME/@@download/ENCFF784DME.fastq.gz Illumina HiSeq 4000 /files/ENCFF118YSX/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF194CKI bam alignments ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF074WTD, ENCFF784DME, ENCFF807MUK 1912047520 ENCODE Processing Pipeline 04578109bbe2608a906f33dc24cf574c https://www.encodeproject.org/files/ENCFF194CKI/@@download/ENCFF194CKI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF378CDM bam unfiltered alignments ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF074WTD, ENCFF643CGH, ENCFF784DME 6018845222 ENCODE Processing Pipeline 56c5beb8fb8fb051078d286d94b8b47a https://www.encodeproject.org/files/ENCFF378CDM/@@download/ENCFF378CDM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF959CSW bam unfiltered alignments ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF074WTD, ENCFF784DME, ENCFF807MUK 6017875041 ENCODE Processing Pipeline face2c3bd583c5f4156e22d6f0f8e11f https://www.encodeproject.org/files/ENCFF959CSW/@@download/ENCFF959CSW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF136USC bam alignments ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF074WTD, ENCFF643CGH, ENCFF784DME 1914233569 ENCODE Processing Pipeline 5fd6b13f14741e3e254fc6b1285ef316 https://www.encodeproject.org/files/ENCFF136USC/@@download/ENCFF136USC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF692HMO bigWig fold change over control ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF136USC, ENCFF842GBA 934132133 ENCODE Processing Pipeline 1eeb42bf7ae3cdbdddfa77d40b8ac5ba https://www.encodeproject.org/files/ENCFF692HMO/@@download/ENCFF692HMO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF760ECN bigWig signal p-value ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF136USC, ENCFF842GBA 1079762958 ENCODE Processing Pipeline 4248f3982538f3e5f854860fdccf5158 https://www.encodeproject.org/files/ENCFF760ECN/@@download/ENCFF760ECN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF920BPA bigWig signal p-value ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF194CKI, ENCFF919PUP 1059080220 ENCODE Processing Pipeline e4141ec177fa48b4632d667fd2b51737 https://www.encodeproject.org/files/ENCFF920BPA/@@download/ENCFF920BPA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF978GEZ bed narrowPeak peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF136USC, ENCFF842GBA 5899895 ENCODE Processing Pipeline 57ef794b4fd23328f26aaae261f64a43 https://www.encodeproject.org/files/ENCFF978GEZ/@@download/ENCFF978GEZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF294TAI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF978GEZ 270907 ENCODE Processing Pipeline cac571ce1926c7a751e6d311c7d9a3c7 https://www.encodeproject.org/files/ENCFF294TAI/@@download/ENCFF294TAI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF162UZK bigBed narrowPeak peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF978GEZ 13462098 ENCODE Processing Pipeline 8163a64c7feba2d7f69c9f38a4b1c44a https://www.encodeproject.org/files/ENCFF162UZK/@@download/ENCFF162UZK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF360SVY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF294TAI 620406 ENCODE Processing Pipeline bce0e5d12fd46af543f01985c62e6426 https://www.encodeproject.org/files/ENCFF360SVY/@@download/ENCFF360SVY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF324UHK bigBed narrowPeak peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF013FRY 13455868 ENCODE Processing Pipeline 75a14fa8557e0055a22a0ecd92ea3c47 https://www.encodeproject.org/files/ENCFF324UHK/@@download/ENCFF324UHK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF575RKM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF013FRY 270796 ENCODE Processing Pipeline 5fb77854cd1aaf0d726e49de1a7df0a1 https://www.encodeproject.org/files/ENCFF575RKM/@@download/ENCFF575RKM.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF935HKA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF575RKM 617122 ENCODE Processing Pipeline dfd1577469bd8e0cdef69b3ef8fca123 https://www.encodeproject.org/files/ENCFF935HKA/@@download/ENCFF935HKA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF839CVW bigWig fold change over control ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF194CKI, ENCFF919PUP 940770233 ENCODE Processing Pipeline edd5e23176ca22c9ab3154f648ae0caf https://www.encodeproject.org/files/ENCFF839CVW/@@download/ENCFF839CVW.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF013FRY bed narrowPeak peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF194CKI, ENCFF919PUP 5908109 ENCODE Processing Pipeline 48d3893bce9bd0bdb21bb7d65fa9ed56 https://www.encodeproject.org/files/ENCFF013FRY/@@download/ENCFF013FRY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF643ITK fastq reads ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF324OEI 3434825160 Michael Snyder, Stanford f818d881552f9e9809bf0d3b8d664379 SRA:SRR6213556 https://www.encodeproject.org/files/ENCFF643ITK/@@download/ENCFF643ITK.fastq.gz Illumina HiSeq 4000 /files/ENCFF052ROO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF324OEI fastq reads ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF643ITK 3998565851 Michael Snyder, Stanford 9200d147844e49be9bcf32f862282163 SRA:SRR6213556 https://www.encodeproject.org/files/ENCFF324OEI/@@download/ENCFF324OEI.fastq.gz Illumina HiSeq 4000 /files/ENCFF118YSX/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF004SUO bam unfiltered alignments ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF324OEI, ENCFF643CGH, ENCFF643ITK 7115839749 ENCODE Processing Pipeline 89c47076eac6a7d1474c51efef0f8ca4 https://www.encodeproject.org/files/ENCFF004SUO/@@download/ENCFF004SUO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF833PXK bam unfiltered alignments ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF324OEI, ENCFF643ITK, ENCFF807MUK 7110467241 ENCODE Processing Pipeline 83a289132738ec835d185a739776a940 https://www.encodeproject.org/files/ENCFF833PXK/@@download/ENCFF833PXK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF021JJL bam alignments ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF324OEI, ENCFF643ITK, ENCFF807MUK 3352870542 ENCODE Processing Pipeline c1f0f9b862d210c2d65f613542450a7d https://www.encodeproject.org/files/ENCFF021JJL/@@download/ENCFF021JJL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF339EOA bam alignments ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF324OEI, ENCFF643CGH, ENCFF643ITK 3356304028 ENCODE Processing Pipeline 0f935e01614675f820475dd06a80e8a6 https://www.encodeproject.org/files/ENCFF339EOA/@@download/ENCFF339EOA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF681BQF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF974SIH 969377 ENCODE Processing Pipeline d14502083005fcc41d7d92f8f8df3a04 https://www.encodeproject.org/files/ENCFF681BQF/@@download/ENCFF681BQF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF230IDW bed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF021JJL, ENCFF919PUP 6734617 ENCODE Processing Pipeline 4894bdd4a9bce3552cb6a0c1123fb0be https://www.encodeproject.org/files/ENCFF230IDW/@@download/ENCFF230IDW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF826UZW bigWig signal p-value ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF021JJL, ENCFF919PUP 1330643561 ENCODE Processing Pipeline a886141630c90f67fca245424a966cb6 https://www.encodeproject.org/files/ENCFF826UZW/@@download/ENCFF826UZW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF974SIH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF230IDW 548722 ENCODE Processing Pipeline 161bf154480ad101b65eabcc9250ffab https://www.encodeproject.org/files/ENCFF974SIH/@@download/ENCFF974SIH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF143AFG bigWig fold change over control ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF021JJL, ENCFF919PUP 1290548198 ENCODE Processing Pipeline 51256acad95e09e93fcf52daa5b97279 https://www.encodeproject.org/files/ENCFF143AFG/@@download/ENCFF143AFG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF281FLA bigBed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF230IDW 13658330 ENCODE Processing Pipeline 8eb15e24b6d97e8799b97fafa8d52598 https://www.encodeproject.org/files/ENCFF281FLA/@@download/ENCFF281FLA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF009LCG bigWig fold change over control ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF339EOA, ENCFF842GBA 1310096990 ENCODE Processing Pipeline 2ee1638e7edb970faa32451abf52a496 https://www.encodeproject.org/files/ENCFF009LCG/@@download/ENCFF009LCG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF582HJX bigWig signal p-value ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF339EOA, ENCFF842GBA 1221449031 ENCODE Processing Pipeline e6cef75b406e276ca2739123075f363a https://www.encodeproject.org/files/ENCFF582HJX/@@download/ENCFF582HJX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF167SCX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF930EVC 549382 ENCODE Processing Pipeline ce810b28c03745d40e7a7368a2262a47 https://www.encodeproject.org/files/ENCFF167SCX/@@download/ENCFF167SCX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF940OQE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF167SCX 970661 ENCODE Processing Pipeline d60edab09ed0ae4ea0b324d1024de93a https://www.encodeproject.org/files/ENCFF940OQE/@@download/ENCFF940OQE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF230JCN bigBed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF930EVC 13674555 ENCODE Processing Pipeline 8987100bd4aac86e925d95408d6746e5 https://www.encodeproject.org/files/ENCFF230JCN/@@download/ENCFF230JCN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF930EVC bed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF339EOA, ENCFF842GBA 6739145 ENCODE Processing Pipeline cde4369bcbc9d6d8bc2b60df5e679de9 https://www.encodeproject.org/files/ENCFF930EVC/@@download/ENCFF930EVC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF942ZRE fastq reads ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 1 ENCFF908SKY 4443988675 Michael Snyder, Stanford 7e2d551f2095c8eee31203c3dd02cd9b https://www.encodeproject.org/files/ENCFF942ZRE/@@download/ENCFF942ZRE.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF908SKY fastq reads ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 2 ENCFF942ZRE 4955245370 Michael Snyder, Stanford c324414dc19f388da6424b5841ea9031 https://www.encodeproject.org/files/ENCFF908SKY/@@download/ENCFF908SKY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF770NDG fastq reads ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 1 100 paired-ended 1 ENCFF369MSV 4181264057 Michael Snyder, Stanford f43c35df651fa500da223cc7d11157f5 https://www.encodeproject.org/files/ENCFF770NDG/@@download/ENCFF770NDG.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF369MSV fastq reads ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 1 100 paired-ended 2 ENCFF770NDG 4504943813 Michael Snyder, Stanford d09964673a604e42fa92751c151174b0 https://www.encodeproject.org/files/ENCFF369MSV/@@download/ENCFF369MSV.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF587CZT bam unfiltered alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 100 ENCFF807MUK, ENCFF908SKY, ENCFF942ZRE 7847864345 ENCODE Processing Pipeline c4e12579d0c93b01b3c5d89e0dbcb5a4 https://www.encodeproject.org/files/ENCFF587CZT/@@download/ENCFF587CZT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF370NZS bam unfiltered alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 100 ENCFF369MSV, ENCFF770NDG, ENCFF807MUK 8032102357 ENCODE Processing Pipeline 3749067914580edad31c72d3b9b0c3b6 https://www.encodeproject.org/files/ENCFF370NZS/@@download/ENCFF370NZS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF806JOR bam unfiltered alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 100 ENCFF643CGH, ENCFF908SKY, ENCFF942ZRE 7845188840 ENCODE Processing Pipeline 373aa391d531f0da18fe5964ee379bc3 https://www.encodeproject.org/files/ENCFF806JOR/@@download/ENCFF806JOR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF795LNM bam unfiltered alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 100 ENCFF369MSV, ENCFF643CGH, ENCFF770NDG 8039757861 ENCODE Processing Pipeline dabfcb34d2390e0eb693d8dee11c360a https://www.encodeproject.org/files/ENCFF795LNM/@@download/ENCFF795LNM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF127OLY bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 100 ENCFF807MUK, ENCFF908SKY, ENCFF942ZRE 4135383689 ENCODE Processing Pipeline 620850699dec1a60cea6040ddb7ae763 https://www.encodeproject.org/files/ENCFF127OLY/@@download/ENCFF127OLY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF040NCF bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 100 ENCFF643CGH, ENCFF908SKY, ENCFF942ZRE 4138210429 ENCODE Processing Pipeline 143be789d3393db550005938676ec12d https://www.encodeproject.org/files/ENCFF040NCF/@@download/ENCFF040NCF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF172XFW bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 100 ENCFF369MSV, ENCFF643CGH, ENCFF770NDG 5607680139 ENCODE Processing Pipeline ca199e29f0396e93d077415311a7e83f https://www.encodeproject.org/files/ENCFF172XFW/@@download/ENCFF172XFW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF345VAR bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 100 ENCFF369MSV, ENCFF770NDG, ENCFF807MUK 5602611724 ENCODE Processing Pipeline 77a3e686caf30b5c1e0fa2706c1807bf https://www.encodeproject.org/files/ENCFF345VAR/@@download/ENCFF345VAR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF775STF bigWig signal p-value ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF127OLY, ENCFF160VXC 1214568140 ENCODE Processing Pipeline 5dad989afc756fe28676be4b1d6c39c8 https://www.encodeproject.org/files/ENCFF775STF/@@download/ENCFF775STF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF273PLE bigWig signal p-value ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 1794147073 ENCODE Processing Pipeline 16f6b3cd1cee0f10e73e798b2244f1b2 https://www.encodeproject.org/files/ENCFF273PLE/@@download/ENCFF273PLE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF063VGP bigWig signal p-value ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF127OLY, ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 2445175994 ENCODE Processing Pipeline 9190a6fbdd169cc6327be7fb67c6e436 https://www.encodeproject.org/files/ENCFF063VGP/@@download/ENCFF063VGP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF864OJK bigWig fold change over control ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF127OLY, ENCFF160VXC 1427431090 ENCODE Processing Pipeline 2eac646bea37541461c795b56f438c4c https://www.encodeproject.org/files/ENCFF864OJK/@@download/ENCFF864OJK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF020DCN bigWig fold change over control ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 2101514701 ENCODE Processing Pipeline a8417ea38f2dadd9deec92ed305200e5 https://www.encodeproject.org/files/ENCFF020DCN/@@download/ENCFF020DCN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF137LOO bigWig fold change over control ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF127OLY, ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 2558779371 ENCODE Processing Pipeline f938510440a7f09569f115de638ba8b8 https://www.encodeproject.org/files/ENCFF137LOO/@@download/ENCFF137LOO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF883NAR bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF127OLY, ENCFF160VXC 7021507 ENCODE Processing Pipeline fe45ff543ef8295a5913e3a681bfce77 https://www.encodeproject.org/files/ENCFF883NAR/@@download/ENCFF883NAR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF275SGC bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 7080034 ENCODE Processing Pipeline 4acb7dce7f05f3a92faf0b49cf25c25c https://www.encodeproject.org/files/ENCFF275SGC/@@download/ENCFF275SGC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF932HNN bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF127OLY, ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 7256189 ENCODE Processing Pipeline 07c568604e67de0671d91cef01b6929b https://www.encodeproject.org/files/ENCFF932HNN/@@download/ENCFF932HNN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF080EKE bigBed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF883NAR 13033276 ENCODE Processing Pipeline 9223f63ec61024656d49a44a50e53221 https://www.encodeproject.org/files/ENCFF080EKE/@@download/ENCFF080EKE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF385NGV bigBed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF275SGC 10877067 ENCODE Processing Pipeline 3682be03feccfd82066536d0157efeef https://www.encodeproject.org/files/ENCFF385NGV/@@download/ENCFF385NGV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF135RRA bigBed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF932HNN 12982366 ENCODE Processing Pipeline 130ce48fda3c4199c8e0335ddd0c1d2a https://www.encodeproject.org/files/ENCFF135RRA/@@download/ENCFF135RRA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF765UDL bed narrowPeak conservative idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF001TDO, ENCFF275SGC, ENCFF883NAR, ENCFF932HNN 119498 ENCODE Processing Pipeline 6f18ee66326f6e50179cdb72337839af https://www.encodeproject.org/files/ENCFF765UDL/@@download/ENCFF765UDL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF685PMX bigBed narrowPeak conservative idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF765UDL 276425 ENCODE Processing Pipeline 564262954855d54ad3f766c9da5c53b5 https://www.encodeproject.org/files/ENCFF685PMX/@@download/ENCFF685PMX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF580DYE bed narrowPeak optimal idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF001TDO, ENCFF275SGC, ENCFF883NAR, ENCFF932HNN 203383 ENCODE Processing Pipeline 7d4031c85c21101f3842c25c04a662c7 https://www.encodeproject.org/files/ENCFF580DYE/@@download/ENCFF580DYE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF933UFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF580DYE 474667 ENCODE Processing Pipeline 9b520d82acaa292dca7b2888d8f3fdb0 https://www.encodeproject.org/files/ENCFF933UFQ/@@download/ENCFF933UFQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF103KGE bigWig signal p-value ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF040NCF, ENCFF790TAN 1303233729 ENCODE Processing Pipeline ed7d85cce9be02ea6af0797652f152d7 https://www.encodeproject.org/files/ENCFF103KGE/@@download/ENCFF103KGE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF650JID bigWig signal p-value ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF172XFW, ENCFF712WXB, ENCFF790TAN 2005705160 ENCODE Processing Pipeline 9276358fc35c68da69e082e8fd268efa https://www.encodeproject.org/files/ENCFF650JID/@@download/ENCFF650JID.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF458TVS bigWig signal p-value ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF040NCF, ENCFF172XFW, ENCFF712WXB, ENCFF790TAN 2454714847 ENCODE Processing Pipeline 210ba0fa3a81d8f95ccd37ba7dddd42e https://www.encodeproject.org/files/ENCFF458TVS/@@download/ENCFF458TVS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF694CYO bigWig fold change over control ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF040NCF, ENCFF790TAN 1429721076 ENCODE Processing Pipeline 548c9604e09b1ace9b8bdad008cffdc3 https://www.encodeproject.org/files/ENCFF694CYO/@@download/ENCFF694CYO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF534UCW bigWig fold change over control ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF172XFW, ENCFF712WXB, ENCFF790TAN 2101932892 ENCODE Processing Pipeline c286541932895151986940270c43d1aa https://www.encodeproject.org/files/ENCFF534UCW/@@download/ENCFF534UCW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF656AYV bigWig fold change over control ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF040NCF, ENCFF172XFW, ENCFF712WXB, ENCFF790TAN 2571840745 ENCODE Processing Pipeline 410ef7bc165408435e4c18ae9277ad4e https://www.encodeproject.org/files/ENCFF656AYV/@@download/ENCFF656AYV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF407QEE bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF172XFW, ENCFF712WXB, ENCFF790TAN 7034259 ENCODE Processing Pipeline 3ef84d4a9920882d83e975d075e4b87e https://www.encodeproject.org/files/ENCFF407QEE/@@download/ENCFF407QEE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF014UJZ bigBed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 ENCFF407QEE 10886847 ENCODE Processing Pipeline 0a4ad519b71fe93b3c8c4ede39a4f203 https://www.encodeproject.org/files/ENCFF014UJZ/@@download/ENCFF014UJZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF608YGZ bed narrowPeak conservative idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF230MVV, ENCFF407QEE, ENCFF419RSJ, ENCFF789HLZ 120536 ENCODE Processing Pipeline 5f7a69d6013e9d737f68d87326d59b68 https://www.encodeproject.org/files/ENCFF608YGZ/@@download/ENCFF608YGZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF913RTD bigBed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF230MVV 13046676 ENCODE Processing Pipeline fa31e14153a8c9718dfd65ba6353db9f https://www.encodeproject.org/files/ENCFF913RTD/@@download/ENCFF913RTD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF230MVV bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 ENCFF040NCF, ENCFF790TAN 6963863 ENCODE Processing Pipeline 383cb764aab51a75b5ad0d2686b054e6 https://www.encodeproject.org/files/ENCFF230MVV/@@download/ENCFF230MVV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF789HLZ bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF040NCF, ENCFF172XFW, ENCFF712WXB, ENCFF790TAN 7256427 ENCODE Processing Pipeline 893d18e2a36b50aaf98443a14d1f8a3c https://www.encodeproject.org/files/ENCFF789HLZ/@@download/ENCFF789HLZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF674TMB bigBed narrowPeak conservative idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF608YGZ 279272 ENCODE Processing Pipeline 1b159540aefb1a92cc85dcafe166b950 https://www.encodeproject.org/files/ENCFF674TMB/@@download/ENCFF674TMB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF742LSD bed narrowPeak optimal idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF230MVV, ENCFF407QEE, ENCFF419RSJ, ENCFF789HLZ 203453 ENCODE Processing Pipeline a652dacc98f08a6d68539358b6889050 https://www.encodeproject.org/files/ENCFF742LSD/@@download/ENCFF742LSD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF280PVF bigBed narrowPeak optimal idr thresholded peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF742LSD 475896 ENCODE Processing Pipeline 99dd039035c8bac824babf6cf53ffc24 https://www.encodeproject.org/files/ENCFF280PVF/@@download/ENCFF280PVF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF749CSK bigBed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF789HLZ 12996085 ENCODE Processing Pipeline f07b3a8632c0796f64db0991f6daed48 https://www.encodeproject.org/files/ENCFF749CSK/@@download/ENCFF749CSK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF339UFF bam unfiltered alignments ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF342VAQ, ENCFF422OJZ, ENCFF807MUK 2747342529 ENCODE Processing Pipeline 850d365df2efc61f7038edfd17817a45 https://www.encodeproject.org/files/ENCFF339UFF/@@download/ENCFF339UFF.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF422OJZ fastq reads ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF342VAQ 1184856885 Michael Snyder, Stanford 21ab1f379786911403754d8bc926e92a SRA:SRR6213835 https://www.encodeproject.org/files/ENCFF422OJZ/@@download/ENCFF422OJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF805UIJ/ released control low read depth, low read depth, antibody characterized with exemption ENCFF342VAQ fastq reads ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF422OJZ 1187923545 Michael Snyder, Stanford 246c91e4a5183a15f6ba2abc29091d69 SRA:SRR6213835 https://www.encodeproject.org/files/ENCFF342VAQ/@@download/ENCFF342VAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF333IGR/ released control low read depth, low read depth, antibody characterized with exemption ENCFF263IJB bam alignments ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF342VAQ, ENCFF422OJZ, ENCFF807MUK 2276793050 ENCODE Processing Pipeline ad0c94612cc80c85bd4faf9f2928889e https://www.encodeproject.org/files/ENCFF263IJB/@@download/ENCFF263IJB.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF025CMC bam unfiltered alignments ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF342VAQ, ENCFF422OJZ, ENCFF643CGH 2751196902 ENCODE Processing Pipeline d24e3ffeec24b5d190a3ce62f5f51097 https://www.encodeproject.org/files/ENCFF025CMC/@@download/ENCFF025CMC.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF604JZN bam alignments ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF342VAQ, ENCFF422OJZ, ENCFF643CGH 2279732950 ENCODE Processing Pipeline 2deac8fa2fc133dacb9d3c629e9a5f2b https://www.encodeproject.org/files/ENCFF604JZN/@@download/ENCFF604JZN.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF860UXP bigWig signal p-value ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF263IJB, ENCFF570YAA 613330007 ENCODE Processing Pipeline 4aa560c3ab5961b664ff1338013b3ad1 https://www.encodeproject.org/files/ENCFF860UXP/@@download/ENCFF860UXP.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF423DFR bigWig fold change over control ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF263IJB, ENCFF570YAA 541526310 ENCODE Processing Pipeline fd62e75fd2fc8c2036e50913f1981245 https://www.encodeproject.org/files/ENCFF423DFR/@@download/ENCFF423DFR.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF088TUO bed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF263IJB, ENCFF570YAA 4655953 ENCODE Processing Pipeline e5c8b9aff0b2a9efeacc424525f999b2 https://www.encodeproject.org/files/ENCFF088TUO/@@download/ENCFF088TUO.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF628ZLI bigBed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF088TUO 11046334 ENCODE Processing Pipeline ab039f6d9c326d208bd71fbd3142d250 https://www.encodeproject.org/files/ENCFF628ZLI/@@download/ENCFF628ZLI.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF369UWV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF088TUO 168397 ENCODE Processing Pipeline f2e6dccbbba9d2961a62abe146f5b625 https://www.encodeproject.org/files/ENCFF369UWV/@@download/ENCFF369UWV.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF465DFF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF369UWV 354238 ENCODE Processing Pipeline 2af2f504d70ac1d06858ac7b14839757 https://www.encodeproject.org/files/ENCFF465DFF/@@download/ENCFF465DFF.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF731YRQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF538QPY 353340 ENCODE Processing Pipeline 7c1c95fc32934ca0dc157b5dca6b441a https://www.encodeproject.org/files/ENCFF731YRQ/@@download/ENCFF731YRQ.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF538QPY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF919KHH 166110 ENCODE Processing Pipeline d8f078ab224f66432b3d7b003f8c3f16 https://www.encodeproject.org/files/ENCFF538QPY/@@download/ENCFF538QPY.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF748PHO bigWig fold change over control ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF604JZN, ENCFF752HGK 539604433 ENCODE Processing Pipeline 0cd8d8ebeee6691737e258cf9696fdea https://www.encodeproject.org/files/ENCFF748PHO/@@download/ENCFF748PHO.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF059FKD bigWig signal p-value ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF604JZN, ENCFF752HGK 502250078 ENCODE Processing Pipeline 1d26f1cd2f331402eb5187773ff9a391 https://www.encodeproject.org/files/ENCFF059FKD/@@download/ENCFF059FKD.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF919KHH bed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF604JZN, ENCFF752HGK 4593931 ENCODE Processing Pipeline f6474fb9f18d9a34ff8da4de1984df6a https://www.encodeproject.org/files/ENCFF919KHH/@@download/ENCFF919KHH.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF486CMI bigBed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF919KHH 10990866 ENCODE Processing Pipeline c8085616e9c5911d8481164fd6f40729 https://www.encodeproject.org/files/ENCFF486CMI/@@download/ENCFF486CMI.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF846BTF fastq reads ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF133IBS 1296046548 Richard Myers, HAIB 50de1099f54ab41ee1b3d13e9c045ecd SRA:SRR6213225 https://www.encodeproject.org/files/ENCFF846BTF/@@download/ENCFF846BTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF939CSH/ released low read depth, antibody characterized with exemption missing control alignments ENCFF133IBS fastq reads ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF846BTF 1269460468 Richard Myers, HAIB 75457cdce544fa33ba5cf651d3a0e69c SRA:SRR6213225 https://www.encodeproject.org/files/ENCFF133IBS/@@download/ENCFF133IBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF141WOU/ released low read depth, antibody characterized with exemption missing control alignments ENCFF827JFW bam unfiltered alignments ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF133IBS, ENCFF807MUK, ENCFF846BTF 3158572201 ENCODE Processing Pipeline 4085e4344bab279967e6c8593a9426c8 https://www.encodeproject.org/files/ENCFF827JFW/@@download/ENCFF827JFW.bam hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF329BOB bam unfiltered alignments ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF133IBS, ENCFF643CGH, ENCFF846BTF 3170717243 ENCODE Processing Pipeline c744ed65e686873c051d04a816689066 https://www.encodeproject.org/files/ENCFF329BOB/@@download/ENCFF329BOB.bam GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF527RBK bam alignments ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF133IBS, ENCFF643CGH, ENCFF846BTF 2447866623 ENCODE Processing Pipeline 55cb02bcd104d8000978e037c4b4ad71 https://www.encodeproject.org/files/ENCFF527RBK/@@download/ENCFF527RBK.bam GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF726KOK bam alignments ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF133IBS, ENCFF807MUK, ENCFF846BTF 2446585181 ENCODE Processing Pipeline b9efae8e1e18f10f12b971992b651436 https://www.encodeproject.org/files/ENCFF726KOK/@@download/ENCFF726KOK.bam hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF844FEO bigWig signal p-value ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF527RBK 1074767011 ENCODE Processing Pipeline f7e261b8d0f51bfc56fd26e7e9a3a850 https://www.encodeproject.org/files/ENCFF844FEO/@@download/ENCFF844FEO.bigWig GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF305XIN bigWig fold change over control ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF527RBK 996326495 ENCODE Processing Pipeline f6c8e9689e07c7c56db9977a01e0bdfb https://www.encodeproject.org/files/ENCFF305XIN/@@download/ENCFF305XIN.bigWig GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF495JYR bed narrowPeak peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF527RBK 5521388 ENCODE Processing Pipeline 972cecb75a3a1f117d54988233fbcebd https://www.encodeproject.org/files/ENCFF495JYR/@@download/ENCFF495JYR.bed.gz GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF943IGX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF244FQD 384930 ENCODE Processing Pipeline 2808f05f9eef91f716ef6d57307372b2 https://www.encodeproject.org/files/ENCFF943IGX/@@download/ENCFF943IGX.bigBed GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF689HEP bigBed narrowPeak peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF495JYR 11789551 ENCODE Processing Pipeline 41b4413ca8adf9122413eca84770c727 https://www.encodeproject.org/files/ENCFF689HEP/@@download/ENCFF689HEP.bigBed GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF244FQD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF495JYR 177250 ENCODE Processing Pipeline bd428621998ff39a5315959379847fe1 https://www.encodeproject.org/files/ENCFF244FQD/@@download/ENCFF244FQD.bed.gz GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF200AGB bigWig signal p-value ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF726KOK 1078352793 ENCODE Processing Pipeline 3f6f899cf82ad185235d445a1d57d03a https://www.encodeproject.org/files/ENCFF200AGB/@@download/ENCFF200AGB.bigWig hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF348UUV bigWig fold change over control ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF726KOK 995141249 ENCODE Processing Pipeline 3bb7a3542418ef54e2cda3ac014f4fdc https://www.encodeproject.org/files/ENCFF348UUV/@@download/ENCFF348UUV.bigWig hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF035UIJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF913GNW 179206 ENCODE Processing Pipeline 7e56ef87beacb49cb8540f6f23299f85 https://www.encodeproject.org/files/ENCFF035UIJ/@@download/ENCFF035UIJ.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF997RBH bigBed narrowPeak peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF913GNW 11778787 ENCODE Processing Pipeline 489b69ee08ba9bb79b1d1b95c58de95a https://www.encodeproject.org/files/ENCFF997RBH/@@download/ENCFF997RBH.bigBed hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF376ZIE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF035UIJ 384875 ENCODE Processing Pipeline a428a268ec1ff8444aaba1f846ce6b15 https://www.encodeproject.org/files/ENCFF376ZIE/@@download/ENCFF376ZIE.bigBed hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF913GNW bed narrowPeak peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF726KOK 5526232 ENCODE Processing Pipeline 30e19fa28b5af368754c5bc6f9a9905e https://www.encodeproject.org/files/ENCFF913GNW/@@download/ENCFF913GNW.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF761DFV bam unfiltered alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF050YVZ, ENCFF745PCH, ENCFF807MUK 5153661707 ENCODE Processing Pipeline 44f6f27f97db4f9a905c4b107b66f6b8 https://www.encodeproject.org/files/ENCFF761DFV/@@download/ENCFF761DFV.bam hg19 released ENCFF638TEL bam unfiltered alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF299YIC, ENCFF807MUK, ENCFF826AKY 5487959242 ENCODE Processing Pipeline 49a0a8d5ca85e8ccf095f595bbeb8b3c https://www.encodeproject.org/files/ENCFF638TEL/@@download/ENCFF638TEL.bam hg19 released ENCFF745PCH fastq reads ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF050YVZ 2326621988 Michael Snyder, Stanford 213b2563ea594f3e6a16bd2005c7ad27 SRA:SRR5111946 https://www.encodeproject.org/files/ENCFF745PCH/@@download/ENCFF745PCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF050YVZ fastq reads ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF745PCH 2397635314 Michael Snyder, Stanford be30dbb05f0b197f11b09a2e4aca5348 SRA:SRR5111946 https://www.encodeproject.org/files/ENCFF050YVZ/@@download/ENCFF050YVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF826AKY fastq reads ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF299YIC 2503721600 Michael Snyder, Stanford b21ce9b5390cfdce1be30bd5210f55cb SRA:SRR5111945 https://www.encodeproject.org/files/ENCFF826AKY/@@download/ENCFF826AKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF299YIC fastq reads ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF826AKY 2505582335 Michael Snyder, Stanford 7861f6ac8ea5b4b9d5cf32432c373218 SRA:SRR5111945 https://www.encodeproject.org/files/ENCFF299YIC/@@download/ENCFF299YIC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF821TOA bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF299YIC, ENCFF807MUK, ENCFF826AKY 4668356811 ENCODE Processing Pipeline af336ce98d50e63c2e4553c66dd67dbb https://www.encodeproject.org/files/ENCFF821TOA/@@download/ENCFF821TOA.bam hg19 released ENCFF471WLV bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF050YVZ, ENCFF745PCH, ENCFF807MUK 4425767161 ENCODE Processing Pipeline 993c784837eb80a417ff745f52273365 https://www.encodeproject.org/files/ENCFF471WLV/@@download/ENCFF471WLV.bam hg19 released ENCFF084FTC bam unfiltered alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF050YVZ, ENCFF643CGH, ENCFF745PCH 5159630980 ENCODE Processing Pipeline 707ec16a61a577aa723272b01caf772e https://www.encodeproject.org/files/ENCFF084FTC/@@download/ENCFF084FTC.bam GRCh38 released ENCFF701CLT bam unfiltered alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF299YIC, ENCFF643CGH, ENCFF826AKY 5494517150 ENCODE Processing Pipeline ac92a75bd2d218526c18781bd159e2d5 https://www.encodeproject.org/files/ENCFF701CLT/@@download/ENCFF701CLT.bam GRCh38 released ENCFF353XMB bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF050YVZ, ENCFF643CGH, ENCFF745PCH 4429112291 ENCODE Processing Pipeline d326b7cfc0f280aa784cc5a4c33475a1 https://www.encodeproject.org/files/ENCFF353XMB/@@download/ENCFF353XMB.bam GRCh38 released ENCFF131XTL bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF299YIC, ENCFF643CGH, ENCFF826AKY 4671454365 ENCODE Processing Pipeline ff83322aeb0648940a5eaca5be32601b https://www.encodeproject.org/files/ENCFF131XTL/@@download/ENCFF131XTL.bam GRCh38 released ENCFF748WVZ bigWig signal p-value ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF131XTL, ENCFF910IKB 1039488916 ENCODE Processing Pipeline 2d109aafb6922f6eff7166e8e200b9b5 https://www.encodeproject.org/files/ENCFF748WVZ/@@download/ENCFF748WVZ.bigWig GRCh38 released ENCFF601KCA bigWig signal p-value ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF353XMB 1026865476 ENCODE Processing Pipeline e55df03051217cb2bd81f4977f4aabfb https://www.encodeproject.org/files/ENCFF601KCA/@@download/ENCFF601KCA.bigWig GRCh38 released ENCFF994IMQ bigWig signal p-value ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF131XTL, ENCFF227IZS, ENCFF353XMB, ENCFF910IKB 2166424721 ENCODE Processing Pipeline 0043ceefe78eda240e7ace6a8304d388 https://www.encodeproject.org/files/ENCFF994IMQ/@@download/ENCFF994IMQ.bigWig GRCh38 released ENCFF600TLE bigWig fold change over control ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF131XTL, ENCFF910IKB 1251199621 ENCODE Processing Pipeline 6d6219591eb70d1d37541535b11c71ed https://www.encodeproject.org/files/ENCFF600TLE/@@download/ENCFF600TLE.bigWig GRCh38 released ENCFF703TSA bigWig fold change over control ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF353XMB 1156687160 ENCODE Processing Pipeline 4201fb1abc3a9400eecd51c5a64340cd https://www.encodeproject.org/files/ENCFF703TSA/@@download/ENCFF703TSA.bigWig GRCh38 released ENCFF837HCK bigWig fold change over control ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF131XTL, ENCFF227IZS, ENCFF353XMB, ENCFF910IKB 2158632906 ENCODE Processing Pipeline cd3b4275c7976d3de930134b982056b9 https://www.encodeproject.org/files/ENCFF837HCK/@@download/ENCFF837HCK.bigWig GRCh38 released ENCFF944TDV bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF131XTL, ENCFF910IKB 6644453 ENCODE Processing Pipeline 12d561d0a8581e2249aca22a13713e2e https://www.encodeproject.org/files/ENCFF944TDV/@@download/ENCFF944TDV.bed.gz GRCh38 released ENCFF137YWA bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF353XMB 6345252 ENCODE Processing Pipeline 215344f8d95ab198099232c60c721b8a https://www.encodeproject.org/files/ENCFF137YWA/@@download/ENCFF137YWA.bed.gz GRCh38 released ENCFF998NLN bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF131XTL, ENCFF227IZS, ENCFF353XMB, ENCFF910IKB 7226040 ENCODE Processing Pipeline 55d2deb88aed77ed1f3ef9748bf3d17a https://www.encodeproject.org/files/ENCFF998NLN/@@download/ENCFF998NLN.bed.gz GRCh38 released ENCFF230YZG bigBed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF944TDV 13295863 ENCODE Processing Pipeline a2200c7636a8ffb6b89b7bc21291fbac https://www.encodeproject.org/files/ENCFF230YZG/@@download/ENCFF230YZG.bigBed GRCh38 released ENCFF106FSX bigBed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF137YWA 13369065 ENCODE Processing Pipeline 6604fc1ba2f579871c638def100342db https://www.encodeproject.org/files/ENCFF106FSX/@@download/ENCFF106FSX.bigBed GRCh38 released ENCFF295RLO bigBed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF998NLN 13192828 ENCODE Processing Pipeline 9cd89d34542055319610535d69be27e3 https://www.encodeproject.org/files/ENCFF295RLO/@@download/ENCFF295RLO.bigBed GRCh38 released ENCFF745CJF bed narrowPeak conservative idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF137YWA, ENCFF419RSJ, ENCFF944TDV, ENCFF998NLN 167041 ENCODE Processing Pipeline 1c2c00bf18bf71714844a3bb37a62d92 https://www.encodeproject.org/files/ENCFF745CJF/@@download/ENCFF745CJF.bed.gz GRCh38 released ENCFF384GYE bigBed narrowPeak conservative idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF745CJF 389659 ENCODE Processing Pipeline 2cc3ffb828fb3f7ab4d26bdab875cf1e https://www.encodeproject.org/files/ENCFF384GYE/@@download/ENCFF384GYE.bigBed GRCh38 released ENCFF388LUX bed narrowPeak optimal idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF137YWA, ENCFF419RSJ, ENCFF944TDV, ENCFF998NLN 249289 ENCODE Processing Pipeline 2bd8969d70f944c99a46017e037274a6 https://www.encodeproject.org/files/ENCFF388LUX/@@download/ENCFF388LUX.bed.gz GRCh38 released ENCFF052CVK bigBed narrowPeak optimal idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF388LUX 529920 ENCODE Processing Pipeline e30e4dd158b36f52e6691168965e116f https://www.encodeproject.org/files/ENCFF052CVK/@@download/ENCFF052CVK.bigBed GRCh38 released ENCFF531VHW bigWig signal p-value ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF471WLV, ENCFF581ZJL, ENCFF821TOA 2024525678 ENCODE Processing Pipeline ddef83b82b76eaeea24383f96f966269 https://www.encodeproject.org/files/ENCFF531VHW/@@download/ENCFF531VHW.bigWig hg19 released ENCFF057GKG bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF821TOA 6650101 ENCODE Processing Pipeline c685a5d1d610d6d4d42b6e64e6cba59b https://www.encodeproject.org/files/ENCFF057GKG/@@download/ENCFF057GKG.bed.gz hg19 released ENCFF140PZM bigWig signal p-value ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF821TOA 1211818904 ENCODE Processing Pipeline ff367ad16addb995feccf985d036041a https://www.encodeproject.org/files/ENCFF140PZM/@@download/ENCFF140PZM.bigWig hg19 released ENCFF168YOC bigWig fold change over control ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF821TOA 1275559787 ENCODE Processing Pipeline e45cf25b11109f5f25dc37fa2aaa548f https://www.encodeproject.org/files/ENCFF168YOC/@@download/ENCFF168YOC.bigWig hg19 released ENCFF961SKK bigWig fold change over control ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF471WLV 1154276493 ENCODE Processing Pipeline 4ee52e3c94dc768541b7f040a6902c7c https://www.encodeproject.org/files/ENCFF961SKK/@@download/ENCFF961SKK.bigWig hg19 released ENCFF520BTA bigWig fold change over control ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF471WLV, ENCFF581ZJL, ENCFF821TOA 2159925830 ENCODE Processing Pipeline 351b62d2e9a72c06bf946e4a26953cab https://www.encodeproject.org/files/ENCFF520BTA/@@download/ENCFF520BTA.bigWig hg19 released ENCFF222ORU bigBed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF057GKG 13283602 ENCODE Processing Pipeline b7099a1de4d60921187faab9e8c510d9 https://www.encodeproject.org/files/ENCFF222ORU/@@download/ENCFF222ORU.bigBed hg19 released ENCFF010SWX bigWig signal p-value ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF471WLV 1219597696 ENCODE Processing Pipeline bb32aa89d4f96642624dc4dbf695fbb1 https://www.encodeproject.org/files/ENCFF010SWX/@@download/ENCFF010SWX.bigWig hg19 released ENCFF929AWJ bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF471WLV 6341953 ENCODE Processing Pipeline b55cda7b5759eaf429e79fa33aa4ff83 https://www.encodeproject.org/files/ENCFF929AWJ/@@download/ENCFF929AWJ.bed.gz hg19 released ENCFF549ABW bigBed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF400BXE 13183556 ENCODE Processing Pipeline 7a51e867281f41f99c8d29126d577999 https://www.encodeproject.org/files/ENCFF549ABW/@@download/ENCFF549ABW.bigBed hg19 released ENCFF692EWX bigBed narrowPeak optimal idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF197OGH 533015 ENCODE Processing Pipeline cb12c749a0a31189d1419f1bc72f30ba https://www.encodeproject.org/files/ENCFF692EWX/@@download/ENCFF692EWX.bigBed hg19 released ENCFF756SZA bigBed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF929AWJ 13347251 ENCODE Processing Pipeline 76d9a3fe6d91f06a38bf4b61cce3b7c7 https://www.encodeproject.org/files/ENCFF756SZA/@@download/ENCFF756SZA.bigBed hg19 released ENCFF148VLB bed narrowPeak conservative idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF057GKG, ENCFF400BXE, ENCFF929AWJ 168994 ENCODE Processing Pipeline c3ec8b30735636847557c4dc4c33131d https://www.encodeproject.org/files/ENCFF148VLB/@@download/ENCFF148VLB.bed.gz hg19 released ENCFF449HIT bigBed narrowPeak conservative idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF148VLB 389026 ENCODE Processing Pipeline 533125b3449241abb17040de609a559c https://www.encodeproject.org/files/ENCFF449HIT/@@download/ENCFF449HIT.bigBed hg19 released ENCFF197OGH bed narrowPeak optimal idr thresholded peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF057GKG, ENCFF400BXE, ENCFF929AWJ 255168 ENCODE Processing Pipeline c15d2ef58a82ef9fef93dd34f601b9fe https://www.encodeproject.org/files/ENCFF197OGH/@@download/ENCFF197OGH.bed.gz hg19 released ENCFF400BXE bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF471WLV, ENCFF581ZJL, ENCFF821TOA 7231144 ENCODE Processing Pipeline be3d1c655e0c192b2e782be178ccd282 https://www.encodeproject.org/files/ENCFF400BXE/@@download/ENCFF400BXE.bed.gz hg19 released ENCFF616PFZ bam unfiltered alignments ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 100 ENCFF028SIJ, ENCFF659QDJ, ENCFF807MUK 3262544394 ENCODE Processing Pipeline 6f51ff27e1506951c3415da7c0f98e37 https://www.encodeproject.org/files/ENCFF616PFZ/@@download/ENCFF616PFZ.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF028SIJ fastq reads ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF659QDJ 1494760446 Michael Snyder, Stanford ef0002643af62ddeed7f2c71b45f2462 SRA:SRR6214317 https://www.encodeproject.org/files/ENCFF028SIJ/@@download/ENCFF028SIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF775XBQ/ released control low read depth, low read depth, antibody characterized with exemption ENCFF659QDJ fastq reads ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF028SIJ 1492827364 Michael Snyder, Stanford 5b76520fe90ffe80338b0bb3cf78045d SRA:SRR6214317 https://www.encodeproject.org/files/ENCFF659QDJ/@@download/ENCFF659QDJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF511JSA/ released control low read depth, low read depth, antibody characterized with exemption ENCFF972JKW bam alignments ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF028SIJ, ENCFF659QDJ, ENCFF807MUK 2415656823 ENCODE Processing Pipeline 40ae85eae07aefc62978f8bdb7164e2c https://www.encodeproject.org/files/ENCFF972JKW/@@download/ENCFF972JKW.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF437NXL bam unfiltered alignments ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 100 ENCFF028SIJ, ENCFF643CGH, ENCFF659QDJ 3264488204 ENCODE Processing Pipeline d1ceba6738f28996c721bd4d7295c64e https://www.encodeproject.org/files/ENCFF437NXL/@@download/ENCFF437NXL.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF046ZDT bam alignments ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 100 ENCFF028SIJ, ENCFF643CGH, ENCFF659QDJ 2418362159 ENCODE Processing Pipeline 4f939cfed0d92e53bdad669ce99188f8 https://www.encodeproject.org/files/ENCFF046ZDT/@@download/ENCFF046ZDT.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF962PSR bigWig signal p-value ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF267XAF, ENCFF972JKW 505261602 ENCODE Processing Pipeline abd4f8187b43124300ada4e316757364 https://www.encodeproject.org/files/ENCFF962PSR/@@download/ENCFF962PSR.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF685DGA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF251IXD 984488 ENCODE Processing Pipeline f8d925f8c306d4306ea1fc51f3a6cfcc https://www.encodeproject.org/files/ENCFF685DGA/@@download/ENCFF685DGA.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF251IXD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF001TDO, ENCFF618NMD 557584 ENCODE Processing Pipeline e9d98a6b9e9199c4a09277e57142c981 https://www.encodeproject.org/files/ENCFF251IXD/@@download/ENCFF251IXD.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF618NMD bed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF267XAF, ENCFF972JKW 5609470 ENCODE Processing Pipeline 749bb05ad9a11d370a9568a6d71ca03a https://www.encodeproject.org/files/ENCFF618NMD/@@download/ENCFF618NMD.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF146QSC bigWig fold change over control ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF267XAF, ENCFF972JKW 542954401 ENCODE Processing Pipeline 5f0ad004bb526c186e4a73feb8b33bbc https://www.encodeproject.org/files/ENCFF146QSC/@@download/ENCFF146QSC.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF415FMS bigBed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF618NMD 13437291 ENCODE Processing Pipeline 3dd807032f449b9de7c8335f17e68ddf https://www.encodeproject.org/files/ENCFF415FMS/@@download/ENCFF415FMS.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF799DBR bigWig signal p-value ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF046ZDT, ENCFF418LUT 554998959 ENCODE Processing Pipeline 7125e76986f34712a35ac82cf60ca554 https://www.encodeproject.org/files/ENCFF799DBR/@@download/ENCFF799DBR.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF458ZYU bigWig fold change over control ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF046ZDT, ENCFF418LUT 544794905 ENCODE Processing Pipeline b7463c88f9fab3be980700db73db9b71 https://www.encodeproject.org/files/ENCFF458ZYU/@@download/ENCFF458ZYU.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF785EDU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF607VAP 1030482 ENCODE Processing Pipeline 49f568f43f15aeea0fc505dfa233d6fa https://www.encodeproject.org/files/ENCFF785EDU/@@download/ENCFF785EDU.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF165OLU bigBed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF616QVQ 13546845 ENCODE Processing Pipeline 52b6aab41875595d3b68914d6928c67e https://www.encodeproject.org/files/ENCFF165OLU/@@download/ENCFF165OLU.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF616QVQ bed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF046ZDT, ENCFF418LUT 5695864 ENCODE Processing Pipeline a38546da6be34d5791809e2ec382db5a https://www.encodeproject.org/files/ENCFF616QVQ/@@download/ENCFF616QVQ.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF607VAP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF419RSJ, ENCFF616QVQ 590648 ENCODE Processing Pipeline 176f9881f51a368d8940388b458249fe https://www.encodeproject.org/files/ENCFF607VAP/@@download/ENCFF607VAP.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF816RZD bam unfiltered alignments ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF466DDM, ENCFF768VKW, ENCFF807MUK 3700730516 ENCODE Processing Pipeline 216d4b032051246602765c484604e05c https://www.encodeproject.org/files/ENCFF816RZD/@@download/ENCFF816RZD.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF768VKW fastq reads ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF466DDM 1642402662 Michael Snyder, Stanford 2f53adc78c388d0463805cca7b5af09c SRA:SRR6212653 https://www.encodeproject.org/files/ENCFF768VKW/@@download/ENCFF768VKW.fastq.gz Illumina HiSeq 2000 /files/ENCFF511JSA/ released control low read depth, low read depth, antibody characterized with exemption ENCFF466DDM fastq reads ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF768VKW 1646582277 Michael Snyder, Stanford 6d0430260a5c8e35d3f7eac6adfd748f SRA:SRR6212653 https://www.encodeproject.org/files/ENCFF466DDM/@@download/ENCFF466DDM.fastq.gz Illumina HiSeq 2000 /files/ENCFF775XBQ/ released control low read depth, low read depth, antibody characterized with exemption ENCFF965QNY bam alignments ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF466DDM, ENCFF768VKW, ENCFF807MUK 2864108229 ENCODE Processing Pipeline 2d1f65bfd937411cde4fa4bd03052727 https://www.encodeproject.org/files/ENCFF965QNY/@@download/ENCFF965QNY.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF265PNE bam unfiltered alignments ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF466DDM, ENCFF643CGH, ENCFF768VKW 3704486124 ENCODE Processing Pipeline 1c17106e914025de1ada2d44b9e655b8 https://www.encodeproject.org/files/ENCFF265PNE/@@download/ENCFF265PNE.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF345GIA bam alignments ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF466DDM, ENCFF643CGH, ENCFF768VKW 2869114049 ENCODE Processing Pipeline 846790d129b38c514672a5b8ea486e61 https://www.encodeproject.org/files/ENCFF345GIA/@@download/ENCFF345GIA.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF022MCD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF348YEE 162303 ENCODE Processing Pipeline d939881370b9d207b896b98ad046b8e6 https://www.encodeproject.org/files/ENCFF022MCD/@@download/ENCFF022MCD.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF741QLC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF022MCD 337845 ENCODE Processing Pipeline 579a9609edabf929b70e2b5f41e46cc0 https://www.encodeproject.org/files/ENCFF741QLC/@@download/ENCFF741QLC.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF354CDG bigWig signal p-value ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF345GIA, ENCFF418LUT 681679146 ENCODE Processing Pipeline 928beb9c51dc5d11cad6967a45fe3404 https://www.encodeproject.org/files/ENCFF354CDG/@@download/ENCFF354CDG.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF900EGY bigWig signal p-value ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF267XAF, ENCFF965QNY 680431518 ENCODE Processing Pipeline 9d9ef8f923d020527e6a86c71a60305f https://www.encodeproject.org/files/ENCFF900EGY/@@download/ENCFF900EGY.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF348YEE bed narrowPeak peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF267XAF, ENCFF965QNY 4831888 ENCODE Processing Pipeline da09fae2ecaad51979dbe193ebdecd59 https://www.encodeproject.org/files/ENCFF348YEE/@@download/ENCFF348YEE.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF495CSK bigBed narrowPeak peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF348YEE 11084617 ENCODE Processing Pipeline 470afa9448c6aa4405efba52d5545e54 https://www.encodeproject.org/files/ENCFF495CSK/@@download/ENCFF495CSK.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF185LTG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF004RBP, ENCFF419RSJ 160799 ENCODE Processing Pipeline 5b7ca014e7586ec403f1b6553e712bb3 https://www.encodeproject.org/files/ENCFF185LTG/@@download/ENCFF185LTG.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF200MRS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF185LTG 338360 ENCODE Processing Pipeline b8f36185f6764d748c93863d3ed71021 https://www.encodeproject.org/files/ENCFF200MRS/@@download/ENCFF200MRS.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF202YYG bigWig fold change over control ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF267XAF, ENCFF965QNY 636146902 ENCODE Processing Pipeline 11937e0fb9b85f6945ae2195404c337a https://www.encodeproject.org/files/ENCFF202YYG/@@download/ENCFF202YYG.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF795RWB bigWig fold change over control ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF345GIA, ENCFF418LUT 635787400 ENCODE Processing Pipeline be9c19336d5386b4d9e0f16d890f1c33 https://www.encodeproject.org/files/ENCFF795RWB/@@download/ENCFF795RWB.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF004RBP bed narrowPeak peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF345GIA, ENCFF418LUT 4834298 ENCODE Processing Pipeline 211ab557f53cce75bf9471f2534301a4 https://www.encodeproject.org/files/ENCFF004RBP/@@download/ENCFF004RBP.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF686WLN bigBed narrowPeak peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF004RBP 11102217 ENCODE Processing Pipeline db61661261ee62b434ee84a123d5de47 https://www.encodeproject.org/files/ENCFF686WLN/@@download/ENCFF686WLN.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF460VIY bam unfiltered alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 100 ENCFF126NLO, ENCFF358CMD, ENCFF807MUK 4162480935 ENCODE Processing Pipeline d2b4c579c029981b752c299d749b7a10 https://www.encodeproject.org/files/ENCFF460VIY/@@download/ENCFF460VIY.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF663AYJ bam unfiltered alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432KKI, ENCFF807MUK, ENCFF971GFY 4800179221 ENCODE Processing Pipeline f7ff3a83bf6d8d322388108c172ac382 https://www.encodeproject.org/files/ENCFF663AYJ/@@download/ENCFF663AYJ.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF432KKI fastq reads ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF971GFY 2180570220 Michael Snyder, Stanford 82ce9dad11aa15eaf80fb43b9cab66b7 https://www.encodeproject.org/files/ENCFF432KKI/@@download/ENCFF432KKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF358CMD fastq reads ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF126NLO 1896189834 Michael Snyder, Stanford a5fc00183d3016717bf5ca3f15c77db6 https://www.encodeproject.org/files/ENCFF358CMD/@@download/ENCFF358CMD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF126NLO fastq reads ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF358CMD 1874002133 Michael Snyder, Stanford 853de97885ef73f46c26082a6f23bb05 https://www.encodeproject.org/files/ENCFF126NLO/@@download/ENCFF126NLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF971GFY fastq reads ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF432KKI 2211092366 Michael Snyder, Stanford 58b67ded9104e4dab8c2d08353bc0881 https://www.encodeproject.org/files/ENCFF971GFY/@@download/ENCFF971GFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF330WGJ bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432KKI, ENCFF807MUK, ENCFF971GFY 4145841335 ENCODE Processing Pipeline 3134b244641c33f294dc31f7bab1bf3f https://www.encodeproject.org/files/ENCFF330WGJ/@@download/ENCFF330WGJ.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF634JQQ bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 100 ENCFF126NLO, ENCFF358CMD, ENCFF807MUK 3486116166 ENCODE Processing Pipeline a8f8c05808c51e772e25453e99bf3e88 https://www.encodeproject.org/files/ENCFF634JQQ/@@download/ENCFF634JQQ.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF292ZDX bigWig signal p-value ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF634JQQ 966392738 ENCODE Processing Pipeline 8767bad9d4a92caa0cda9dd0919e8cb0 https://www.encodeproject.org/files/ENCFF292ZDX/@@download/ENCFF292ZDX.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF719MGA bigWig signal p-value ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF330WGJ 1104440662 ENCODE Processing Pipeline f7b4b14502ef94c054c8ea5aa7346dfe https://www.encodeproject.org/files/ENCFF719MGA/@@download/ENCFF719MGA.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF799VYS bigWig signal p-value ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF330WGJ, ENCFF581ZJL, ENCFF634JQQ 1966811672 ENCODE Processing Pipeline f7c31b1e09329cc2c3cda0661d721600 https://www.encodeproject.org/files/ENCFF799VYS/@@download/ENCFF799VYS.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF732ETO bigWig fold change over control ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF634JQQ 1072719364 ENCODE Processing Pipeline 90fd923c9f5ef38bc95a186287b5c21d https://www.encodeproject.org/files/ENCFF732ETO/@@download/ENCFF732ETO.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF308TXS bigWig fold change over control ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF330WGJ 1143630115 ENCODE Processing Pipeline 1617603d2ee71b8ae3295d06b8033411 https://www.encodeproject.org/files/ENCFF308TXS/@@download/ENCFF308TXS.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF806QJB bigWig fold change over control ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF330WGJ, ENCFF581ZJL, ENCFF634JQQ 2049415502 ENCODE Processing Pipeline 1c0e17155afabe31ef41593072d3ee8e https://www.encodeproject.org/files/ENCFF806QJB/@@download/ENCFF806QJB.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF544REW bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF634JQQ 6694070 ENCODE Processing Pipeline 59eacda1b4c81306cc76878e34ac55dd https://www.encodeproject.org/files/ENCFF544REW/@@download/ENCFF544REW.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF729TVF bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF330WGJ, ENCFF581ZJL, ENCFF634JQQ 7241031 ENCODE Processing Pipeline b120d41e06e0664f32c740a42e0d4006 https://www.encodeproject.org/files/ENCFF729TVF/@@download/ENCFF729TVF.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF422XRA bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF330WGJ 6984393 ENCODE Processing Pipeline ca24922c8643afe2720b83cc333e2c6b https://www.encodeproject.org/files/ENCFF422XRA/@@download/ENCFF422XRA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF064VMH bigBed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF544REW 13237406 ENCODE Processing Pipeline ebfb4e75ce0ec503053c10aae352b4ae https://www.encodeproject.org/files/ENCFF064VMH/@@download/ENCFF064VMH.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF004ZFS bigBed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF422XRA 13077307 ENCODE Processing Pipeline e496bf9d2bb953df3367fc07451ce212 https://www.encodeproject.org/files/ENCFF004ZFS/@@download/ENCFF004ZFS.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF591EXX bigBed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF729TVF 12984081 ENCODE Processing Pipeline b912e014dfcfb7f64725bcbaf3ce3a5a https://www.encodeproject.org/files/ENCFF591EXX/@@download/ENCFF591EXX.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF077KPD bed narrowPeak conservative idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF422XRA, ENCFF544REW, ENCFF729TVF 194170 ENCODE Processing Pipeline 5852f52e0a7df3795881f08be28d5b06 https://www.encodeproject.org/files/ENCFF077KPD/@@download/ENCFF077KPD.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF554LHL bigBed narrowPeak conservative idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF077KPD 484690 ENCODE Processing Pipeline 23174df806338d8e1e44a8ac99400ece https://www.encodeproject.org/files/ENCFF554LHL/@@download/ENCFF554LHL.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF728NEV bed narrowPeak optimal idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF422XRA, ENCFF544REW, ENCFF729TVF 260121 ENCODE Processing Pipeline fcf09c097b11a2cc09977c01b17abe51 https://www.encodeproject.org/files/ENCFF728NEV/@@download/ENCFF728NEV.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF758PXK bigBed narrowPeak optimal idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF728NEV 596097 ENCODE Processing Pipeline 9b5880b4fc0618ad7e86a47ea7de0e3f https://www.encodeproject.org/files/ENCFF758PXK/@@download/ENCFF758PXK.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF893QTT bam unfiltered alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 100 ENCFF126NLO, ENCFF358CMD, ENCFF643CGH 4166061393 ENCODE Processing Pipeline a3fed4dadee4668d8282db4b88049a9e https://www.encodeproject.org/files/ENCFF893QTT/@@download/ENCFF893QTT.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF472YRV bam unfiltered alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432KKI, ENCFF643CGH, ENCFF971GFY 4804198737 ENCODE Processing Pipeline 9a2d222d3956590c28aa60d65b1fdec6 https://www.encodeproject.org/files/ENCFF472YRV/@@download/ENCFF472YRV.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF657ZIF bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 100 ENCFF126NLO, ENCFF358CMD, ENCFF643CGH 3487588864 ENCODE Processing Pipeline c2c4fdc785d39cbd1105f94f21ac533d https://www.encodeproject.org/files/ENCFF657ZIF/@@download/ENCFF657ZIF.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF682PSU bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432KKI, ENCFF643CGH, ENCFF971GFY 4147990101 ENCODE Processing Pipeline 046911249664b44f9343e80f39aecb0d https://www.encodeproject.org/files/ENCFF682PSU/@@download/ENCFF682PSU.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF203AWB bigWig signal p-value ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF657ZIF, ENCFF910IKB 945379180 ENCODE Processing Pipeline 82b404609486918eec2a52b9adc93c37 https://www.encodeproject.org/files/ENCFF203AWB/@@download/ENCFF203AWB.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF309NCS bigWig signal p-value ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF682PSU 974285673 ENCODE Processing Pipeline 1330116146f21f10d4678faf9aa9dab7 https://www.encodeproject.org/files/ENCFF309NCS/@@download/ENCFF309NCS.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF350LAJ bigWig signal p-value ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF657ZIF, ENCFF682PSU, ENCFF910IKB 1930160217 ENCODE Processing Pipeline 5cbe4ce2b17dcb7d14cbe83dfebfedc1 https://www.encodeproject.org/files/ENCFF350LAJ/@@download/ENCFF350LAJ.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF323TVN bigWig fold change over control ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF657ZIF, ENCFF910IKB 1072516476 ENCODE Processing Pipeline 69a206296af48915489f3ff09df6a723 https://www.encodeproject.org/files/ENCFF323TVN/@@download/ENCFF323TVN.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF844FJJ bigWig fold change over control ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF682PSU 1137044304 ENCODE Processing Pipeline 8895d31a451d1115a4b685cd8596162a https://www.encodeproject.org/files/ENCFF844FJJ/@@download/ENCFF844FJJ.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF540DKX bigWig fold change over control ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF657ZIF, ENCFF682PSU, ENCFF910IKB 2037967961 ENCODE Processing Pipeline cd24d96c65d39594ee59d90ab39e4686 https://www.encodeproject.org/files/ENCFF540DKX/@@download/ENCFF540DKX.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF800QXL bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF657ZIF, ENCFF910IKB 6593377 ENCODE Processing Pipeline 0671b78525a692ec837c080ffc512d9a https://www.encodeproject.org/files/ENCFF800QXL/@@download/ENCFF800QXL.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF058OAF bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF682PSU 6858131 ENCODE Processing Pipeline eee28b8b0fc5455894fef4488541efc8 https://www.encodeproject.org/files/ENCFF058OAF/@@download/ENCFF058OAF.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF072ZBZ bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF657ZIF, ENCFF682PSU, ENCFF910IKB 7220104 ENCODE Processing Pipeline d1edcf9c0fbfc8e46b43c1c3a48a5c19 https://www.encodeproject.org/files/ENCFF072ZBZ/@@download/ENCFF072ZBZ.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF069EMD bigBed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF800QXL 13240899 ENCODE Processing Pipeline 1cb5ab404333cbf6081eeb594bc453ab https://www.encodeproject.org/files/ENCFF069EMD/@@download/ENCFF069EMD.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF695VXO bigBed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF058OAF 13087643 ENCODE Processing Pipeline a61e353b2e18d7e742c76389c43123bb https://www.encodeproject.org/files/ENCFF695VXO/@@download/ENCFF695VXO.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF156QRR bigBed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF072ZBZ 12978936 ENCODE Processing Pipeline 9c03404af0cae99267b8857b11639c11 https://www.encodeproject.org/files/ENCFF156QRR/@@download/ENCFF156QRR.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF046NMM bed narrowPeak conservative idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF058OAF, ENCFF072ZBZ, ENCFF419RSJ, ENCFF800QXL 189658 ENCODE Processing Pipeline dd8d574b1bc2a5975bd48f26232aa2fb https://www.encodeproject.org/files/ENCFF046NMM/@@download/ENCFF046NMM.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF849WUT bigBed narrowPeak conservative idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF046NMM 393511 ENCODE Processing Pipeline a1e0dfa3c21f4dbd42080315db1dcae8 https://www.encodeproject.org/files/ENCFF849WUT/@@download/ENCFF849WUT.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF760EPB bed narrowPeak optimal idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF058OAF, ENCFF072ZBZ, ENCFF419RSJ, ENCFF800QXL 254161 ENCODE Processing Pipeline 2dfcc0dbcc16a66ad3c37f4ccea080eb https://www.encodeproject.org/files/ENCFF760EPB/@@download/ENCFF760EPB.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF618BPL bigBed narrowPeak optimal idr thresholded peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF760EPB 591008 ENCODE Processing Pipeline 4c7cd6091ae8d0ef08036943afa56f28 https://www.encodeproject.org/files/ENCFF618BPL/@@download/ENCFF618BPL.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF814ZXA fastq reads ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 2 ENCFF150ATP 1986262190 Richard Myers, HAIB c96d58c4b079be67b19d9abec9c09fe4 SRA:SRR6213965 https://www.encodeproject.org/files/ENCFF814ZXA/@@download/ENCFF814ZXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF500RYP/ released antibody characterized with exemption ENCFF150ATP fastq reads ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 1 ENCFF814ZXA 1941104419 Richard Myers, HAIB e169742c9505528a67996c665864391f SRA:SRR6213965 https://www.encodeproject.org/files/ENCFF150ATP/@@download/ENCFF150ATP.fastq.gz Illumina HiSeq 2000 /files/ENCFF688VIR/ released antibody characterized with exemption ENCFF259CDS bam alignments ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF150ATP, ENCFF643CGH, ENCFF814ZXA 3315513718 ENCODE Processing Pipeline 66c21029697e50c711fa15893791cf87 https://www.encodeproject.org/files/ENCFF259CDS/@@download/ENCFF259CDS.bam GRCh38 released antibody characterized with exemption ENCFF308UPV bam unfiltered alignments ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF150ATP, ENCFF643CGH, ENCFF814ZXA 4484238386 ENCODE Processing Pipeline 51c3c8997a2ee9a1dd2cb4063fba2546 https://www.encodeproject.org/files/ENCFF308UPV/@@download/ENCFF308UPV.bam GRCh38 released antibody characterized with exemption ENCFF574YYV bam unfiltered alignments ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF150ATP, ENCFF807MUK, ENCFF814ZXA 4474781598 ENCODE Processing Pipeline 139308a93356b2c8e33dd41d2a2a1ee8 https://www.encodeproject.org/files/ENCFF574YYV/@@download/ENCFF574YYV.bam hg19 released antibody characterized with exemption ENCFF622CTL bam alignments ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF150ATP, ENCFF807MUK, ENCFF814ZXA 3315231561 ENCODE Processing Pipeline 395850f0fcc656a66d3e4e7a4aa09f27 https://www.encodeproject.org/files/ENCFF622CTL/@@download/ENCFF622CTL.bam hg19 released antibody characterized with exemption ENCFF903RGZ bigWig signal p-value ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF259CDS, ENCFF680OHW 1187057716 ENCODE Processing Pipeline 613f52fa716e9b324a2b3ddaad0083a7 https://www.encodeproject.org/files/ENCFF903RGZ/@@download/ENCFF903RGZ.bigWig GRCh38 released antibody characterized with exemption ENCFF419YGU bigBed narrowPeak peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF579GMB 12912261 ENCODE Processing Pipeline e78c89f870e4ff745d5cfbfcdd3b2874 https://www.encodeproject.org/files/ENCFF419YGU/@@download/ENCFF419YGU.bigBed GRCh38 released antibody characterized with exemption ENCFF594BQL bigWig fold change over control ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF259CDS, ENCFF680OHW 1078115945 ENCODE Processing Pipeline 7967bd19ecff2c4f90239f5c215dc1c7 https://www.encodeproject.org/files/ENCFF594BQL/@@download/ENCFF594BQL.bigWig GRCh38 released antibody characterized with exemption ENCFF941HRX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF899FTS 1697803 ENCODE Processing Pipeline 2442cf347945eb02bf5a234d374a7195 https://www.encodeproject.org/files/ENCFF941HRX/@@download/ENCFF941HRX.bigBed GRCh38 released antibody characterized with exemption ENCFF899FTS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF419RSJ, ENCFF579GMB 933789 ENCODE Processing Pipeline 245f1ec3d72d93c55f02b34efc47a568 https://www.encodeproject.org/files/ENCFF899FTS/@@download/ENCFF899FTS.bed.gz GRCh38 released antibody characterized with exemption ENCFF579GMB bed narrowPeak peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF259CDS, ENCFF680OHW 6999104 ENCODE Processing Pipeline 3c260aa9ac4dfe86d9477675e72f2944 https://www.encodeproject.org/files/ENCFF579GMB/@@download/ENCFF579GMB.bed.gz GRCh38 released antibody characterized with exemption ENCFF032RNH bigBed narrowPeak peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF875DLM 12825605 ENCODE Processing Pipeline 3b6ea9655a8b07def3e3c0346453ee1c https://www.encodeproject.org/files/ENCFF032RNH/@@download/ENCFF032RNH.bigBed hg19 released antibody characterized with exemption ENCFF546RER bigWig fold change over control ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF444SZG, ENCFF622CTL 1087590740 ENCODE Processing Pipeline 6e47da4c050cc97f2121426afef68c6a https://www.encodeproject.org/files/ENCFF546RER/@@download/ENCFF546RER.bigWig hg19 released antibody characterized with exemption ENCFF875DLM bed narrowPeak peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF444SZG, ENCFF622CTL 6930376 ENCODE Processing Pipeline 4d4177385f67999c819446a179bae721 https://www.encodeproject.org/files/ENCFF875DLM/@@download/ENCFF875DLM.bed.gz hg19 released antibody characterized with exemption ENCFF166XQW bigWig signal p-value ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF444SZG, ENCFF622CTL 1207280326 ENCODE Processing Pipeline 18f0432aacfe7a3313daf234f8498dfa https://www.encodeproject.org/files/ENCFF166XQW/@@download/ENCFF166XQW.bigWig hg19 released antibody characterized with exemption ENCFF807YPG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF001TDO, ENCFF875DLM 922059 ENCODE Processing Pipeline a4fa07dd43acab053b82b6452f094ef7 https://www.encodeproject.org/files/ENCFF807YPG/@@download/ENCFF807YPG.bed.gz hg19 released antibody characterized with exemption ENCFF317ROD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF807YPG 1672605 ENCODE Processing Pipeline 91b0b1643291e75122235a45e50d458d https://www.encodeproject.org/files/ENCFF317ROD/@@download/ENCFF317ROD.bigBed hg19 released antibody characterized with exemption ENCFF403YQE fastq reads ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1162146839 Richard Myers, HAIB cda5ff8554a88a27c5919ef890a4e965 SRA:SRR5331262 https://www.encodeproject.org/files/ENCFF403YQE/@@download/ENCFF403YQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF064SPT fastq reads ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1447280684 Richard Myers, HAIB 04dd60afc750691d3ba11272a42fe05f SRA:SRR5331263 https://www.encodeproject.org/files/ENCFF064SPT/@@download/ENCFF064SPT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF147GPM bam unfiltered alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 76 ENCFF403YQE, ENCFF807MUK 1243308040 ENCODE Processing Pipeline d1b79d706dadcb6dbb40ec5b865c9730 https://www.encodeproject.org/files/ENCFF147GPM/@@download/ENCFF147GPM.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF859NCC bam unfiltered alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 76 ENCFF403YQE, ENCFF643CGH 1245427097 ENCODE Processing Pipeline c3a6be1bda62620b9642ef11ddc71beb https://www.encodeproject.org/files/ENCFF859NCC/@@download/ENCFF859NCC.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF282RXE bam unfiltered alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 76 ENCFF064SPT, ENCFF643CGH 1633759226 ENCODE Processing Pipeline 53d1fdc9aa149e5b55f1433249ea4c86 https://www.encodeproject.org/files/ENCFF282RXE/@@download/ENCFF282RXE.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF942LEC bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 76 ENCFF403YQE, ENCFF807MUK 991571982 ENCODE Processing Pipeline 05084dd416746d6bb988786ea208dd01 https://www.encodeproject.org/files/ENCFF942LEC/@@download/ENCFF942LEC.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF889CRT bam unfiltered alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 76 ENCFF064SPT, ENCFF807MUK 1630757811 ENCODE Processing Pipeline 5e73b0093b1e494af2ad7e3a4ce86890 https://www.encodeproject.org/files/ENCFF889CRT/@@download/ENCFF889CRT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF195MMC bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 76 ENCFF403YQE, ENCFF643CGH 991843793 ENCODE Processing Pipeline 144f685d1f025615a67126dbfa181e51 https://www.encodeproject.org/files/ENCFF195MMC/@@download/ENCFF195MMC.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF031TWZ bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 76 ENCFF064SPT, ENCFF807MUK 1289660702 ENCODE Processing Pipeline 335adc6f486cb7ff8d89b38d2a08ff84 https://www.encodeproject.org/files/ENCFF031TWZ/@@download/ENCFF031TWZ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF371LTF bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 76 ENCFF064SPT, ENCFF643CGH 1290113177 ENCODE Processing Pipeline b6ed03f085f43a6fb93432fade2fea31 https://www.encodeproject.org/files/ENCFF371LTF/@@download/ENCFF371LTF.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF890DSY bigWig signal p-value ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF195MMC 496729163 ENCODE Processing Pipeline 6f5404c63fbf0a91d75bf96a56a2a962 https://www.encodeproject.org/files/ENCFF890DSY/@@download/ENCFF890DSY.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF526MWY bigWig signal p-value ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF371LTF 542465327 ENCODE Processing Pipeline 92ef332a8a8de9a43f0f5b2fa3d1f004 https://www.encodeproject.org/files/ENCFF526MWY/@@download/ENCFF526MWY.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF206WUO bigWig signal p-value ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF195MMC, ENCFF371LTF 673521778 ENCODE Processing Pipeline 3cf1b1da56eb4c9557327dbd9b1ab8ab https://www.encodeproject.org/files/ENCFF206WUO/@@download/ENCFF206WUO.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF607SEW bigWig fold change over control ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF371LTF 505669843 ENCODE Processing Pipeline 5b3baa674b2f8da7e2bf02d4ed8f68a0 https://www.encodeproject.org/files/ENCFF607SEW/@@download/ENCFF607SEW.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF390RDZ bigWig fold change over control ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF195MMC, ENCFF371LTF 772717275 ENCODE Processing Pipeline e820ba4b447458a9cd3e6f4d122b918f https://www.encodeproject.org/files/ENCFF390RDZ/@@download/ENCFF390RDZ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF550FDW bigWig fold change over control ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF195MMC 421995883 ENCODE Processing Pipeline 9d3453dbd89d586c2a285c8006868ce3 https://www.encodeproject.org/files/ENCFF550FDW/@@download/ENCFF550FDW.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362YAF bigBed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF189OLH 13005189 ENCODE Processing Pipeline 7b7f5d85b125ae3fe4a0ffad0eead0ba https://www.encodeproject.org/files/ENCFF362YAF/@@download/ENCFF362YAF.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF189OLH bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF195MMC 5944669 ENCODE Processing Pipeline a42df1fe97a7fbc0199fb94bf0048e2b https://www.encodeproject.org/files/ENCFF189OLH/@@download/ENCFF189OLH.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF814ZUE bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF371LTF 6272020 ENCODE Processing Pipeline 94c2ffc54c403c72fe267e961fa4a9ab https://www.encodeproject.org/files/ENCFF814ZUE/@@download/ENCFF814ZUE.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF624EYQ bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF195MMC, ENCFF371LTF 6722007 ENCODE Processing Pipeline 4df409e1496ef00f321cf2182f4b9599 https://www.encodeproject.org/files/ENCFF624EYQ/@@download/ENCFF624EYQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF212YPZ bigBed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF814ZUE 12996014 ENCODE Processing Pipeline fb01d005d0c0f56b6f55ba45fb3d5230 https://www.encodeproject.org/files/ENCFF212YPZ/@@download/ENCFF212YPZ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF635MVU bigBed narrowPeak conservative idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF120LIC 765085 ENCODE Processing Pipeline 11dd2f4cc60c976036ab05d083702264 https://www.encodeproject.org/files/ENCFF635MVU/@@download/ENCFF635MVU.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF478OVU bed narrowPeak optimal idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF189OLH, ENCFF419RSJ, ENCFF624EYQ, ENCFF814ZUE 458228 ENCODE Processing Pipeline f14fe11888dd0225d07190df4aa1307d https://www.encodeproject.org/files/ENCFF478OVU/@@download/ENCFF478OVU.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF488KXN bigBed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF624EYQ 12925107 ENCODE Processing Pipeline fcd3b658b6d46848d24a2d8955fef65a https://www.encodeproject.org/files/ENCFF488KXN/@@download/ENCFF488KXN.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF120LIC bed narrowPeak conservative idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF189OLH, ENCFF419RSJ, ENCFF624EYQ, ENCFF814ZUE 370213 ENCODE Processing Pipeline 2ea3becaa7748493650d0be46f4cb878 https://www.encodeproject.org/files/ENCFF120LIC/@@download/ENCFF120LIC.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF106OIE bigBed narrowPeak optimal idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF478OVU 903528 ENCODE Processing Pipeline 48b7a973655c704969c808e20e90dd09 https://www.encodeproject.org/files/ENCFF106OIE/@@download/ENCFF106OIE.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF807JYO bigWig signal p-value ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF942LEC 1045082813 ENCODE Processing Pipeline 16f58684faa5542003e31ac420e0f9f1 https://www.encodeproject.org/files/ENCFF807JYO/@@download/ENCFF807JYO.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF430KNF bigWig signal p-value ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF031TWZ, ENCFF203ABR 1252172122 ENCODE Processing Pipeline 9467dbe83f90fc3b5af97bcb30732581 https://www.encodeproject.org/files/ENCFF430KNF/@@download/ENCFF430KNF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF768ILD bigWig signal p-value ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF031TWZ, ENCFF203ABR, ENCFF942LEC 1491580312 ENCODE Processing Pipeline eb437ed51345808ce6cc8edef6313aa0 https://www.encodeproject.org/files/ENCFF768ILD/@@download/ENCFF768ILD.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF595GUE bigWig fold change over control ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF031TWZ, ENCFF203ABR 904310257 ENCODE Processing Pipeline 93563440f8c79375ad84f9134a810eb5 https://www.encodeproject.org/files/ENCFF595GUE/@@download/ENCFF595GUE.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF549IDP bigWig fold change over control ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF942LEC 808515248 ENCODE Processing Pipeline 7ebc5bee863346237f58cf6458231215 https://www.encodeproject.org/files/ENCFF549IDP/@@download/ENCFF549IDP.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF343WCZ bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF942LEC 6526342 ENCODE Processing Pipeline d65e164e6f456a4f27abcbe844f3b8b1 https://www.encodeproject.org/files/ENCFF343WCZ/@@download/ENCFF343WCZ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF856NOU bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF031TWZ, ENCFF203ABR 6831716 ENCODE Processing Pipeline 5345b85afc989a1dbc03593dd173d48c https://www.encodeproject.org/files/ENCFF856NOU/@@download/ENCFF856NOU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF991GWU bigWig fold change over control ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF031TWZ, ENCFF203ABR, ENCFF942LEC 1362769826 ENCODE Processing Pipeline b5afd48c072e79445af24696b9cdbc1f https://www.encodeproject.org/files/ENCFF991GWU/@@download/ENCFF991GWU.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF722ULF bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF031TWZ, ENCFF203ABR, ENCFF942LEC 6983295 ENCODE Processing Pipeline 0f78523c5107b612a5f2b3ca31d5d9fc https://www.encodeproject.org/files/ENCFF722ULF/@@download/ENCFF722ULF.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428TEC bigBed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF856NOU 12957373 ENCODE Processing Pipeline e285070cb365a77630f93b6578a71d3a https://www.encodeproject.org/files/ENCFF428TEC/@@download/ENCFF428TEC.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF386ERG bed narrowPeak conservative idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF343WCZ, ENCFF722ULF, ENCFF856NOU 360247 ENCODE Processing Pipeline 16768cf4e6d92c85892c5551ff256705 https://www.encodeproject.org/files/ENCFF386ERG/@@download/ENCFF386ERG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF628YUU bigBed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF722ULF 12849901 ENCODE Processing Pipeline 9cb699ea10d09acb02e61f6d3416544c https://www.encodeproject.org/files/ENCFF628YUU/@@download/ENCFF628YUU.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF673DQA bigBed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF343WCZ 12946964 ENCODE Processing Pipeline da4d2e67981baec039c59e007179f86f https://www.encodeproject.org/files/ENCFF673DQA/@@download/ENCFF673DQA.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF983MSP bed narrowPeak optimal idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF343WCZ, ENCFF722ULF, ENCFF856NOU 450779 ENCODE Processing Pipeline 7ef745d04ab3f726e6605f838187bf7a https://www.encodeproject.org/files/ENCFF983MSP/@@download/ENCFF983MSP.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF873LCC bigBed narrowPeak conservative idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF386ERG 636411 ENCODE Processing Pipeline 8375bcc759f60e33fa78d38abf93f7ad https://www.encodeproject.org/files/ENCFF873LCC/@@download/ENCFF873LCC.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF770DTU bigBed narrowPeak optimal idr thresholded peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF983MSP 938819 ENCODE Processing Pipeline 30deedda420a5373f331970b318f7f09 https://www.encodeproject.org/files/ENCFF770DTU/@@download/ENCFF770DTU.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF415LTO fastq reads ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 1 ENCFF963NAF 2132467875 Richard Myers, HAIB 0ea3b4096d219dc6bb4fc52f9c0c2229 SRA:SRR6212882 https://www.encodeproject.org/files/ENCFF415LTO/@@download/ENCFF415LTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF917RIA/ released antibody characterized with exemption ENCFF963NAF fastq reads ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 2 ENCFF415LTO 2178381073 Richard Myers, HAIB 47cfe42d08001a4e755b40192681a3f4 SRA:SRR6212882 https://www.encodeproject.org/files/ENCFF963NAF/@@download/ENCFF963NAF.fastq.gz Illumina HiSeq 2000 /files/ENCFF613PQJ/ released antibody characterized with exemption ENCFF299HJB bam unfiltered alignments ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF415LTO, ENCFF643CGH, ENCFF963NAF 5146906410 ENCODE Processing Pipeline 026ccc56b4dfa396aa87b588464b9c3a https://www.encodeproject.org/files/ENCFF299HJB/@@download/ENCFF299HJB.bam GRCh38 released antibody characterized with exemption ENCFF315PWO bam alignments ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF415LTO, ENCFF643CGH, ENCFF963NAF 3984913954 ENCODE Processing Pipeline 80f2095c70b6a5d49ae8bb0ee70fcd7d https://www.encodeproject.org/files/ENCFF315PWO/@@download/ENCFF315PWO.bam GRCh38 released antibody characterized with exemption ENCFF815UQQ bam unfiltered alignments ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF415LTO, ENCFF807MUK, ENCFF963NAF 5127328409 ENCODE Processing Pipeline b1c7a18e4cbd016121c0d12a00bf19c3 https://www.encodeproject.org/files/ENCFF815UQQ/@@download/ENCFF815UQQ.bam hg19 released antibody characterized with exemption ENCFF603NZR bam alignments ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF415LTO, ENCFF807MUK, ENCFF963NAF 3983388986 ENCODE Processing Pipeline f8db66bdf8c58e36d99b043c27073c40 https://www.encodeproject.org/files/ENCFF603NZR/@@download/ENCFF603NZR.bam hg19 released antibody characterized with exemption ENCFF787HWB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF156HCI 1237482 ENCODE Processing Pipeline 86e7e8688aa7e3a47b4163691111b271 https://www.encodeproject.org/files/ENCFF787HWB/@@download/ENCFF787HWB.bigBed GRCh38 released antibody characterized with exemption ENCFF043ZLX bigWig fold change over control ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF315PWO, ENCFF993NZP 1375489000 ENCODE Processing Pipeline 087e8aa8ed396ee6896b5cf0107c00b6 https://www.encodeproject.org/files/ENCFF043ZLX/@@download/ENCFF043ZLX.bigWig GRCh38 released antibody characterized with exemption ENCFF219LKP bigBed narrowPeak peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF053BWK 13767115 ENCODE Processing Pipeline cdf71d222bcb8d205ff422e84ff1ca60 https://www.encodeproject.org/files/ENCFF219LKP/@@download/ENCFF219LKP.bigBed GRCh38 released antibody characterized with exemption ENCFF156HCI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF053BWK, ENCFF419RSJ 595310 ENCODE Processing Pipeline ac5ae233be4d81d11f4fe94ad5fed7b0 https://www.encodeproject.org/files/ENCFF156HCI/@@download/ENCFF156HCI.bed.gz GRCh38 released antibody characterized with exemption ENCFF074VQD bigWig signal p-value ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF315PWO, ENCFF993NZP 1171934896 ENCODE Processing Pipeline 4673a359072fde1044ab7e2cbf0c093e https://www.encodeproject.org/files/ENCFF074VQD/@@download/ENCFF074VQD.bigWig GRCh38 released antibody characterized with exemption ENCFF053BWK bed narrowPeak peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF315PWO, ENCFF993NZP 6755619 ENCODE Processing Pipeline 347f69a976eaefb196ddce3e8848b1e1 https://www.encodeproject.org/files/ENCFF053BWK/@@download/ENCFF053BWK.bed.gz GRCh38 released antibody characterized with exemption ENCFF760FNL bigWig fold change over control ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF201UJX, ENCFF603NZR 1392113651 ENCODE Processing Pipeline 87b0d35961bb87c793e0725e142b46f7 https://www.encodeproject.org/files/ENCFF760FNL/@@download/ENCFF760FNL.bigWig hg19 released antibody characterized with exemption ENCFF229ALI bigBed narrowPeak peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF623DIA 13776547 ENCODE Processing Pipeline 00fb5b4e3bcf40ebcda4304c0c6b2f1f https://www.encodeproject.org/files/ENCFF229ALI/@@download/ENCFF229ALI.bigBed hg19 released antibody characterized with exemption ENCFF623DIA bed narrowPeak peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF201UJX, ENCFF603NZR 6780853 ENCODE Processing Pipeline 011af19b49f81fe00b87b10b268c2bfd https://www.encodeproject.org/files/ENCFF623DIA/@@download/ENCFF623DIA.bed.gz hg19 released antibody characterized with exemption ENCFF297RWQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF402FNX 1232339 ENCODE Processing Pipeline c0991275c1cf5aafc20f5e9217f695b5 https://www.encodeproject.org/files/ENCFF297RWQ/@@download/ENCFF297RWQ.bigBed hg19 released antibody characterized with exemption ENCFF106GQM bigWig signal p-value ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF201UJX, ENCFF603NZR 1635771495 ENCODE Processing Pipeline f028e6d578be387d52b2285b3b5c010f https://www.encodeproject.org/files/ENCFF106GQM/@@download/ENCFF106GQM.bigWig hg19 released antibody characterized with exemption ENCFF402FNX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF001TDO, ENCFF623DIA 596425 ENCODE Processing Pipeline c02a3abfa00617748f809aeb2aa3549d https://www.encodeproject.org/files/ENCFF402FNX/@@download/ENCFF402FNX.bed.gz hg19 released antibody characterized with exemption ENCFF239SIO fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 1 100 paired-ended 1 ENCFF871KIO 3674751206 Michael Snyder, Stanford c973c1c18c2c47607c9ce271e374924e https://www.encodeproject.org/files/ENCFF239SIO/@@download/ENCFF239SIO.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF871KIO fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 1 100 paired-ended 2 ENCFF239SIO 4089009941 Michael Snyder, Stanford c4c77679d4b1353b57efc2d3e47791f9 https://www.encodeproject.org/files/ENCFF871KIO/@@download/ENCFF871KIO.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF928EJZ fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 1 100 paired-ended 2 ENCFF545WZD 4311410526 Michael Snyder, Stanford dc78490b0bf2a518b2765f4dd9275f8e https://www.encodeproject.org/files/ENCFF928EJZ/@@download/ENCFF928EJZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF545WZD fastq reads ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 1 100 paired-ended 1 ENCFF928EJZ 3873116306 Michael Snyder, Stanford 314ed65fdfd0ce912fc9e82a2061660f https://www.encodeproject.org/files/ENCFF545WZD/@@download/ENCFF545WZD.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF827JLT bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF807MUK, ENCFF871KIO 6621115746 ENCODE Processing Pipeline 5f0022cac4ac8149e1ff4f50623b0e35 https://www.encodeproject.org/files/ENCFF827JLT/@@download/ENCFF827JLT.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF456UYW bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF643CGH, ENCFF871KIO 6618118810 ENCODE Processing Pipeline e0ea785020a242612c716955f386ac03 https://www.encodeproject.org/files/ENCFF456UYW/@@download/ENCFF456UYW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF966TTY bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF643CGH, ENCFF928EJZ 7241761460 ENCODE Processing Pipeline e310e021237cbb945037b78a9d815603 https://www.encodeproject.org/files/ENCFF966TTY/@@download/ENCFF966TTY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF062BUR bam unfiltered alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF807MUK, ENCFF928EJZ 7242036025 ENCODE Processing Pipeline 4595a746ad1beab98a827f42f71c5b93 https://www.encodeproject.org/files/ENCFF062BUR/@@download/ENCFF062BUR.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF400NRC bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF807MUK, ENCFF871KIO 3555424313 ENCODE Processing Pipeline 3fd86912d0f7a8bc7eb851bf8f087769 https://www.encodeproject.org/files/ENCFF400NRC/@@download/ENCFF400NRC.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF413UKW bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF807MUK, ENCFF928EJZ 4357537660 ENCODE Processing Pipeline 2b55d9acd46e48bb635f09fba38e0732 https://www.encodeproject.org/files/ENCFF413UKW/@@download/ENCFF413UKW.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF094RVF bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF643CGH, ENCFF871KIO 3560103909 ENCODE Processing Pipeline 1447f2a22de63acc2e12f7dc1d1a8fc7 https://www.encodeproject.org/files/ENCFF094RVF/@@download/ENCFF094RVF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF946NSO bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF643CGH, ENCFF928EJZ 4363090811 ENCODE Processing Pipeline fcd47889fdb741eab39844cfb9513e6f https://www.encodeproject.org/files/ENCFF946NSO/@@download/ENCFF946NSO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF236FIA bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 1052142898 ENCODE Processing Pipeline f372572b20ce39c5ef7b64e29e035466 https://www.encodeproject.org/files/ENCFF236FIA/@@download/ENCFF236FIA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF406XIC bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 1495957887 ENCODE Processing Pipeline 8136eb3cb6cd2c7e745dc4fb3b87cdc9 https://www.encodeproject.org/files/ENCFF406XIC/@@download/ENCFF406XIC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF358MLJ bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF400NRC, ENCFF413UKW, ENCFF592WAL, ENCFF901CND 1887346687 ENCODE Processing Pipeline 01eba8073df29b7075d322f31675884f https://www.encodeproject.org/files/ENCFF358MLJ/@@download/ENCFF358MLJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF521ION bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 1297996859 ENCODE Processing Pipeline a2f4da5b167f2f7e8fd66f2857d27376 https://www.encodeproject.org/files/ENCFF521ION/@@download/ENCFF521ION.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF139PCN bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 1892254837 ENCODE Processing Pipeline 47ce1d61ea65f23821d3b7a856474641 https://www.encodeproject.org/files/ENCFF139PCN/@@download/ENCFF139PCN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF463YMM bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF400NRC, ENCFF413UKW, ENCFF592WAL, ENCFF901CND 2334225605 ENCODE Processing Pipeline d3d7ed615f4fdf5aa21a146fc870d19f https://www.encodeproject.org/files/ENCFF463YMM/@@download/ENCFF463YMM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF350LWS bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 6593975 ENCODE Processing Pipeline 5d042bfd10651e0eaa3f9752367e2e13 https://www.encodeproject.org/files/ENCFF350LWS/@@download/ENCFF350LWS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF769CZK bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 7051051 ENCODE Processing Pipeline 7beb67f9bab7888ff35378531645d6bc https://www.encodeproject.org/files/ENCFF769CZK/@@download/ENCFF769CZK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF611QCT bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF769CZK 13244437 ENCODE Processing Pipeline f171d0984422ffbeb0c20bb984555746 https://www.encodeproject.org/files/ENCFF611QCT/@@download/ENCFF611QCT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF268ECX bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF400NRC, ENCFF413UKW, ENCFF592WAL, ENCFF901CND 7232422 ENCODE Processing Pipeline c9ddc2b9734ffebfadbae7b33aca7372 https://www.encodeproject.org/files/ENCFF268ECX/@@download/ENCFF268ECX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF018SCK bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF350LWS 11106804 ENCODE Processing Pipeline 1fa98daaf9f56eaa1c3d06780befd5d4 https://www.encodeproject.org/files/ENCFF018SCK/@@download/ENCFF018SCK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF948RIA bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF268ECX 13160468 ENCODE Processing Pipeline 6080aeb57c7b6ceff572ac9ac3c53fe5 https://www.encodeproject.org/files/ENCFF948RIA/@@download/ENCFF948RIA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF811HKX bigBed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF890HDX 150413 ENCODE Processing Pipeline 0065d0b6ac2e8de6e67f75a0fcf47002 https://www.encodeproject.org/files/ENCFF811HKX/@@download/ENCFF811HKX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF890HDX bed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF268ECX, ENCFF350LWS, ENCFF769CZK 46332 ENCODE Processing Pipeline d5981149e428091b0580deba65fcd932 https://www.encodeproject.org/files/ENCFF890HDX/@@download/ENCFF890HDX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF455YHJ bed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF268ECX, ENCFF350LWS, ENCFF769CZK 73718 ENCODE Processing Pipeline 2598e2b4d1582b2d4fd97e93d48f9d08 https://www.encodeproject.org/files/ENCFF455YHJ/@@download/ENCFF455YHJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF296URW bigBed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF455YHJ 195706 ENCODE Processing Pipeline f2bf98330599cafd468d98daabc1c362 https://www.encodeproject.org/files/ENCFF296URW/@@download/ENCFF296URW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF199EAZ bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF094RVF, ENCFF322NTO 1244335210 ENCODE Processing Pipeline b34d47ba87729575a5a67c22aa117cb6 https://www.encodeproject.org/files/ENCFF199EAZ/@@download/ENCFF199EAZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF120TYU bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 1801658331 ENCODE Processing Pipeline 1e32c9e5a34a830650d7b19170e91ced https://www.encodeproject.org/files/ENCFF120TYU/@@download/ENCFF120TYU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF794WZB bigWig signal p-value ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF094RVF, ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 2209762251 ENCODE Processing Pipeline c79d03035255c3b451c24fa6f881afc5 https://www.encodeproject.org/files/ENCFF794WZB/@@download/ENCFF794WZB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF377HNT bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF094RVF, ENCFF322NTO 1306043630 ENCODE Processing Pipeline 5c52c55f11552115775559b3165d89d2 https://www.encodeproject.org/files/ENCFF377HNT/@@download/ENCFF377HNT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF509YJG bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 1890500544 ENCODE Processing Pipeline 1da2ca1b88df1efb9c60fc8b341ecf2f https://www.encodeproject.org/files/ENCFF509YJG/@@download/ENCFF509YJG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF359QVU bigWig fold change over control ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF094RVF, ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 2334828755 ENCODE Processing Pipeline d8ca68aa9950b257f48e109b5eacac17 https://www.encodeproject.org/files/ENCFF359QVU/@@download/ENCFF359QVU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF935UBG bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF094RVF, ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 7225540 ENCODE Processing Pipeline 046aefe929362f0413d8b57316e6ef3a https://www.encodeproject.org/files/ENCFF935UBG/@@download/ENCFF935UBG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF878RIH bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF094RVF, ENCFF322NTO 6467288 ENCODE Processing Pipeline 9da4e358d15eef1435c3030cd46166f4 https://www.encodeproject.org/files/ENCFF878RIH/@@download/ENCFF878RIH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF594ITU bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF082HOG 13254019 ENCODE Processing Pipeline a103c0cc9c0f10cb96b57eb5b8f8cb55 https://www.encodeproject.org/files/ENCFF594ITU/@@download/ENCFF594ITU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF992JWY bed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF082HOG, ENCFF419RSJ, ENCFF878RIH, ENCFF935UBG 77004 ENCODE Processing Pipeline 6d504382cfd04c96cd2535c4cd14cee5 https://www.encodeproject.org/files/ENCFF992JWY/@@download/ENCFF992JWY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF082HOG bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF322NTO, ENCFF666ATR, ENCFF946NSO 6978581 ENCODE Processing Pipeline a00ccb223335652f2245c12f9727a092 https://www.encodeproject.org/files/ENCFF082HOG/@@download/ENCFF082HOG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF853WAK bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF935UBG 13170705 ENCODE Processing Pipeline 62cdeaf3f35217a113c786f409179aa5 https://www.encodeproject.org/files/ENCFF853WAK/@@download/ENCFF853WAK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF906HWN bigBed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF878RIH 11113043 ENCODE Processing Pipeline 10a128b385df4ca14b55ff8f79d2e8c8 https://www.encodeproject.org/files/ENCFF906HWN/@@download/ENCFF906HWN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF219TAL bed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF082HOG, ENCFF419RSJ, ENCFF878RIH, ENCFF935UBG 46321 ENCODE Processing Pipeline 46e26b67202a4bfe9f94a7a0b3d406a6 https://www.encodeproject.org/files/ENCFF219TAL/@@download/ENCFF219TAL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF016HMS bigBed narrowPeak conservative idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF219TAL 151059 ENCODE Processing Pipeline 455647cfcfec194e6da63686f8b4fc38 https://www.encodeproject.org/files/ENCFF016HMS/@@download/ENCFF016HMS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF470BIA bigBed narrowPeak optimal idr thresholded peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1, 2 ENCFF992JWY 202077 ENCODE Processing Pipeline eb42a71c80e7141dac166d9c83f3a7a4 https://www.encodeproject.org/files/ENCFF470BIA/@@download/ENCFF470BIA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF309FAZ fastq reads ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF140CYN 2837289779 Michael Snyder, Stanford 7d43f4101967c02aaefbb9812a67a0f3 SRA:SRR6214060 https://www.encodeproject.org/files/ENCFF309FAZ/@@download/ENCFF309FAZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF140CYN fastq reads ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF309FAZ 3151367294 Michael Snyder, Stanford b653733c01ee93e1ebe10d0f4b937f31 SRA:SRR6214060 https://www.encodeproject.org/files/ENCFF140CYN/@@download/ENCFF140CYN.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF380LXZ fastq reads ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF480JJF 3094226470 Michael Snyder, Stanford 486cf4109d545846c0f905f0ccd197b8 SRA:SRR6214059 https://www.encodeproject.org/files/ENCFF380LXZ/@@download/ENCFF380LXZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF480JJF fastq reads ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF380LXZ 3425559477 Michael Snyder, Stanford d995bf5a7b51d9018b9c01238073f5a2 SRA:SRR6214059 https://www.encodeproject.org/files/ENCFF480JJF/@@download/ENCFF480JJF.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF040LEJ bam unfiltered alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 100 ENCFF140CYN, ENCFF309FAZ, ENCFF643CGH 5983425355 ENCODE Processing Pipeline bf34472c2134203a9147f98a6c742912 https://www.encodeproject.org/files/ENCFF040LEJ/@@download/ENCFF040LEJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF406AWQ bam unfiltered alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 100 ENCFF380LXZ, ENCFF480JJF, ENCFF643CGH 6579018785 ENCODE Processing Pipeline 89307e22426e270787506c7d93684129 https://www.encodeproject.org/files/ENCFF406AWQ/@@download/ENCFF406AWQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF634WSK bam unfiltered alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 100 ENCFF140CYN, ENCFF309FAZ, ENCFF807MUK 5970471209 ENCODE Processing Pipeline e28fd0c16e3b9dc5c91f7f6c4408be00 https://www.encodeproject.org/files/ENCFF634WSK/@@download/ENCFF634WSK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF941XWZ bam unfiltered alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 100 ENCFF380LXZ, ENCFF480JJF, ENCFF807MUK 6563780800 ENCODE Processing Pipeline b444808c582a6bdcea2b5e4d82bc7692 https://www.encodeproject.org/files/ENCFF941XWZ/@@download/ENCFF941XWZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF140JDN bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 100 ENCFF140CYN, ENCFF309FAZ, ENCFF643CGH 4562269610 ENCODE Processing Pipeline a25ed46902c3d0164532b7cfd183c9be https://www.encodeproject.org/files/ENCFF140JDN/@@download/ENCFF140JDN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF667QTL bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 100 ENCFF140CYN, ENCFF309FAZ, ENCFF807MUK 4556375994 ENCODE Processing Pipeline be49f504420ceee945a417d93fd1d5cb https://www.encodeproject.org/files/ENCFF667QTL/@@download/ENCFF667QTL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF591YZP bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 100 ENCFF380LXZ, ENCFF480JJF, ENCFF643CGH 5258393822 ENCODE Processing Pipeline 12fe5204b007548d85b56bc6d97f0868 https://www.encodeproject.org/files/ENCFF591YZP/@@download/ENCFF591YZP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF118FTD bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 100 ENCFF380LXZ, ENCFF480JJF, ENCFF807MUK 5249087440 ENCODE Processing Pipeline 06448ffecbeb9b20bac34e4c43904b8a https://www.encodeproject.org/files/ENCFF118FTD/@@download/ENCFF118FTD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF739HUH bigWig signal p-value ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF667QTL, ENCFF823USR 1367735933 ENCODE Processing Pipeline 2bfab7d8154e04d5e95dbfc02cb65628 https://www.encodeproject.org/files/ENCFF739HUH/@@download/ENCFF739HUH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF990COD bigWig signal p-value ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF118FTD, ENCFF447KVS, ENCFF823USR 1651528397 ENCODE Processing Pipeline 323d917661fdb5163908bc0a7498d313 https://www.encodeproject.org/files/ENCFF990COD/@@download/ENCFF990COD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF300SML bigWig signal p-value ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF118FTD, ENCFF447KVS, ENCFF667QTL, ENCFF823USR 2309930781 ENCODE Processing Pipeline 6f05b52c2904104ee8d9b7fa90466598 https://www.encodeproject.org/files/ENCFF300SML/@@download/ENCFF300SML.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF059QLT bigWig fold change over control ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF667QTL, ENCFF823USR 1680832846 ENCODE Processing Pipeline fbcb1b5080b15b94445cff6a619f564a https://www.encodeproject.org/files/ENCFF059QLT/@@download/ENCFF059QLT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF403EAE bigWig fold change over control ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF118FTD, ENCFF447KVS, ENCFF823USR 1813977967 ENCODE Processing Pipeline 4098d8b6e7b1d9f1ea1a2a53aa140d07 https://www.encodeproject.org/files/ENCFF403EAE/@@download/ENCFF403EAE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF292XER bigWig fold change over control ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF118FTD, ENCFF447KVS, ENCFF667QTL, ENCFF823USR 2345999702 ENCODE Processing Pipeline 0cef45381bf378bce6569572ad52479a https://www.encodeproject.org/files/ENCFF292XER/@@download/ENCFF292XER.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF291LKR bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF118FTD, ENCFF447KVS, ENCFF823USR 6813767 ENCODE Processing Pipeline 9e82a33c04f76e8a0849ad996675e0cc https://www.encodeproject.org/files/ENCFF291LKR/@@download/ENCFF291LKR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF371FPA bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF667QTL, ENCFF823USR 6696970 ENCODE Processing Pipeline f909c228192449508da5c67159b40045 https://www.encodeproject.org/files/ENCFF371FPA/@@download/ENCFF371FPA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF249GZN bigBed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF371FPA 11338613 ENCODE Processing Pipeline 55f764af7069daa0e55cdce3ca7b0ca9 https://www.encodeproject.org/files/ENCFF249GZN/@@download/ENCFF249GZN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF014SMM bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF118FTD, ENCFF447KVS, ENCFF667QTL, ENCFF823USR 7300976 ENCODE Processing Pipeline bff835baf3e2a7625d72238e87952fd8 https://www.encodeproject.org/files/ENCFF014SMM/@@download/ENCFF014SMM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF525FQI bigBed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF291LKR 11235636 ENCODE Processing Pipeline fe82b925c3efa6b06ca50c02403b2b23 https://www.encodeproject.org/files/ENCFF525FQI/@@download/ENCFF525FQI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF193KGO bigBed narrowPeak conservative idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF142FWM 109719 ENCODE Processing Pipeline bda252e34cee32d3b14572448976356d https://www.encodeproject.org/files/ENCFF193KGO/@@download/ENCFF193KGO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF282SXB bed narrowPeak optimal idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF014SMM, ENCFF291LKR, ENCFF371FPA 52089 ENCODE Processing Pipeline 35d8b5977ee67e6d987d5b8a11f091b9 https://www.encodeproject.org/files/ENCFF282SXB/@@download/ENCFF282SXB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF306IQC bigBed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF014SMM 11152732 ENCODE Processing Pipeline 598cf0ea97fc8d689bb130d7df21fe59 https://www.encodeproject.org/files/ENCFF306IQC/@@download/ENCFF306IQC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF335FVM bigBed narrowPeak optimal idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF282SXB 157513 ENCODE Processing Pipeline 7cad8772bcb50b0bd63b42e85e68ef70 https://www.encodeproject.org/files/ENCFF335FVM/@@download/ENCFF335FVM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF142FWM bed narrowPeak conservative idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF014SMM, ENCFF291LKR, ENCFF371FPA 25285 ENCODE Processing Pipeline b84236530ca4cf5670ffcba29d3084b8 https://www.encodeproject.org/files/ENCFF142FWM/@@download/ENCFF142FWM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF607ACF bigWig signal p-value ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF140JDN, ENCFF191XYH, ENCFF746SKT 1502920006 ENCODE Processing Pipeline 781e965ed77fffe210e1058626e12c46 https://www.encodeproject.org/files/ENCFF607ACF/@@download/ENCFF607ACF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF421BQQ bigWig signal p-value ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF591YZP, ENCFF746SKT 1461664451 ENCODE Processing Pipeline cbefe7a2adb6187406b814226f5429ec https://www.encodeproject.org/files/ENCFF421BQQ/@@download/ENCFF421BQQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF390FUC bigWig signal p-value ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF140JDN, ENCFF191XYH, ENCFF591YZP, ENCFF746SKT 2293692796 ENCODE Processing Pipeline 99bca859ca013281957ae222cc597396 https://www.encodeproject.org/files/ENCFF390FUC/@@download/ENCFF390FUC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF666QRS bigWig fold change over control ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF140JDN, ENCFF191XYH, ENCFF746SKT 1685960041 ENCODE Processing Pipeline cc3664f0e43203a86eb91fe49761bdee https://www.encodeproject.org/files/ENCFF666QRS/@@download/ENCFF666QRS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF707YZQ bigWig fold change over control ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF591YZP, ENCFF746SKT 1818195871 ENCODE Processing Pipeline a1a7906682a463c88e4e886206796e76 https://www.encodeproject.org/files/ENCFF707YZQ/@@download/ENCFF707YZQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF071RAX bigWig fold change over control ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF140JDN, ENCFF191XYH, ENCFF591YZP, ENCFF746SKT 2326261016 ENCODE Processing Pipeline 99f740802302e3701a4373b5c8c7764f https://www.encodeproject.org/files/ENCFF071RAX/@@download/ENCFF071RAX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF580BMC bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF140JDN, ENCFF191XYH, ENCFF746SKT 6582140 ENCODE Processing Pipeline 45801832b17626ac2b719f2057695055 https://www.encodeproject.org/files/ENCFF580BMC/@@download/ENCFF580BMC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF976YGU bigBed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF765FAO 11255561 ENCODE Processing Pipeline ed0356b7ee6fac06d9c1dc4084a88ee6 https://www.encodeproject.org/files/ENCFF976YGU/@@download/ENCFF976YGU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF765FAO bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF591YZP, ENCFF746SKT 6717572 ENCODE Processing Pipeline 6eece9f8c87802a29831a880ebf3c8dc https://www.encodeproject.org/files/ENCFF765FAO/@@download/ENCFF765FAO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF830WRU bigBed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF580BMC 11356194 ENCODE Processing Pipeline f553c1675ebd5a321d8a569ca0774d07 https://www.encodeproject.org/files/ENCFF830WRU/@@download/ENCFF830WRU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF672KIO bigBed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF224VNW 11169097 ENCODE Processing Pipeline 633a638432b9475f81b9d5f06cd9c2f6 https://www.encodeproject.org/files/ENCFF672KIO/@@download/ENCFF672KIO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF270BJM bigBed narrowPeak conservative idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF165MPT 110794 ENCODE Processing Pipeline 8ca6a475e67fbf6ba9327236a0e6ceb6 https://www.encodeproject.org/files/ENCFF270BJM/@@download/ENCFF270BJM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF224VNW bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF140JDN, ENCFF191XYH, ENCFF591YZP, ENCFF746SKT 7274217 ENCODE Processing Pipeline 2c6fce4b6aed632ad7dbd381a0b5cb18 https://www.encodeproject.org/files/ENCFF224VNW/@@download/ENCFF224VNW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF165MPT bed narrowPeak conservative idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF224VNW, ENCFF419RSJ, ENCFF580BMC, ENCFF765FAO 25076 ENCODE Processing Pipeline de32b2e18bca7394472c3a5b9bc6c1e4 https://www.encodeproject.org/files/ENCFF165MPT/@@download/ENCFF165MPT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF219NOE bigBed narrowPeak optimal idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF473UHQ 158674 ENCODE Processing Pipeline 9676ff7ea76cd920389b16576c98334c https://www.encodeproject.org/files/ENCFF219NOE/@@download/ENCFF219NOE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF473UHQ bed narrowPeak optimal idr thresholded peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF224VNW, ENCFF419RSJ, ENCFF580BMC, ENCFF765FAO 51571 ENCODE Processing Pipeline 2823bce409a0db45f0bd3aa24652988c https://www.encodeproject.org/files/ENCFF473UHQ/@@download/ENCFF473UHQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF025XGP fastq reads ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF319EYM 2429020607 Richard Myers, HAIB 922a8961c8209ed62d82a13196552965 SRA:SRR6213675 https://www.encodeproject.org/files/ENCFF025XGP/@@download/ENCFF025XGP.fastq.gz Illumina HiSeq 2000 /files/ENCFF999NFH/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF319EYM fastq reads ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF025XGP 2362964548 Richard Myers, HAIB cf7acae8e04eccfe077ea95432130763 SRA:SRR6213675 https://www.encodeproject.org/files/ENCFF319EYM/@@download/ENCFF319EYM.fastq.gz Illumina HiSeq 2000 /files/ENCFF971VIW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF009DSU bam unfiltered alignments ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF025XGP, ENCFF319EYM, ENCFF643CGH 5272741504 ENCODE Processing Pipeline 239825b5db371e2504a94450cd2c4d9f https://www.encodeproject.org/files/ENCFF009DSU/@@download/ENCFF009DSU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF597ARJ bam unfiltered alignments ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF025XGP, ENCFF319EYM, ENCFF807MUK 5257815744 ENCODE Processing Pipeline 1cd0e6e24f49c42a17da5a7c560e7633 https://www.encodeproject.org/files/ENCFF597ARJ/@@download/ENCFF597ARJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF648GWA bam alignments ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF025XGP, ENCFF319EYM, ENCFF643CGH 2774008686 ENCODE Processing Pipeline 5a388de9e763e499d2f4506a63565ff7 https://www.encodeproject.org/files/ENCFF648GWA/@@download/ENCFF648GWA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF630UCU bam alignments ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF025XGP, ENCFF319EYM, ENCFF807MUK 2771437023 ENCODE Processing Pipeline 5025a0c26e1b2eda241c3e53a8813cba https://www.encodeproject.org/files/ENCFF630UCU/@@download/ENCFF630UCU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF130GLL bigWig signal p-value ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF648GWA 1092052555 ENCODE Processing Pipeline aec63445a07eaeb3eb65e8380ee5d4bd https://www.encodeproject.org/files/ENCFF130GLL/@@download/ENCFF130GLL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF625AQW bigWig fold change over control ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF648GWA 985520251 ENCODE Processing Pipeline 156be8957818b6c5ecd39832cf2040d5 https://www.encodeproject.org/files/ENCFF625AQW/@@download/ENCFF625AQW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF144BDA bed narrowPeak peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF648GWA 4846171 ENCODE Processing Pipeline 1623c1d8fc3a87f9c1e631e79aefb79d https://www.encodeproject.org/files/ENCFF144BDA/@@download/ENCFF144BDA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF630WSU bigBed narrowPeak peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF144BDA 11688493 ENCODE Processing Pipeline 39d762f69b17d859190476d4bf5422d2 https://www.encodeproject.org/files/ENCFF630WSU/@@download/ENCFF630WSU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF154QOD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF199FCD 36686 ENCODE Processing Pipeline c4ddf4434c6875855507440cb414791b https://www.encodeproject.org/files/ENCFF154QOD/@@download/ENCFF154QOD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF199FCD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF144BDA, ENCFF419RSJ 943 ENCODE Processing Pipeline fdb611244fe73a455afc1fdd60686585 https://www.encodeproject.org/files/ENCFF199FCD/@@download/ENCFF199FCD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF434UNF bigWig signal p-value ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF630UCU 979858158 ENCODE Processing Pipeline f459a85fca407d74a06e801068f99009 https://www.encodeproject.org/files/ENCFF434UNF/@@download/ENCFF434UNF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF516GYN bigWig fold change over control ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF630UCU 999655991 ENCODE Processing Pipeline 7c534afefc9535dfe4bc4ee79841cd33 https://www.encodeproject.org/files/ENCFF516GYN/@@download/ENCFF516GYN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF076NNI bigBed narrowPeak peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF609XUG 11666509 ENCODE Processing Pipeline 1332867144e65c375dd2d9dfbb26418b https://www.encodeproject.org/files/ENCFF076NNI/@@download/ENCFF076NNI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF902KAY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF240NSI 15718 ENCODE Processing Pipeline 8d224e36162ad44114a094ba2c44cf87 https://www.encodeproject.org/files/ENCFF902KAY/@@download/ENCFF902KAY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF240NSI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF609XUG 737 ENCODE Processing Pipeline b2ab53728e098e2949f6e4660fe8cd20 https://www.encodeproject.org/files/ENCFF240NSI/@@download/ENCFF240NSI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF609XUG bed narrowPeak peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF630UCU 4845814 ENCODE Processing Pipeline d0aee8a8266310980417af38dbdde8f9 https://www.encodeproject.org/files/ENCFF609XUG/@@download/ENCFF609XUG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF266MCK fastq reads ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1269610730 Richard Myers, HAIB d390b503ffe096a3f7c53e1aad03ef1f SRA:SRR5339678 https://www.encodeproject.org/files/ENCFF266MCK/@@download/ENCFF266MCK.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF811ZQF fastq reads ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1309310657 Richard Myers, HAIB 8c924f30acbf701260756a5c03c574aa SRA:SRR5339677 https://www.encodeproject.org/files/ENCFF811ZQF/@@download/ENCFF811ZQF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045AUV bam unfiltered alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF811ZQF 1425888391 ENCODE Processing Pipeline bfd01397e685637c322482a46400c641 https://www.encodeproject.org/files/ENCFF045AUV/@@download/ENCFF045AUV.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF971RLJ bam unfiltered alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 76 ENCFF266MCK, ENCFF643CGH 1389961231 ENCODE Processing Pipeline 3beb04a148e4fe4ae39c5ea7967d23f4 https://www.encodeproject.org/files/ENCFF971RLJ/@@download/ENCFF971RLJ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681PFC bam unfiltered alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 76 ENCFF266MCK, ENCFF807MUK 1385884524 ENCODE Processing Pipeline eaa1d15e200cecd4bdb68cc1cd712014 https://www.encodeproject.org/files/ENCFF681PFC/@@download/ENCFF681PFC.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF803STI bam unfiltered alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF811ZQF 1422981192 ENCODE Processing Pipeline 7eabca6a275a2b8f9b0c17ee79e137c0 https://www.encodeproject.org/files/ENCFF803STI/@@download/ENCFF803STI.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF033VMH bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF811ZQF 1116396701 ENCODE Processing Pipeline f07ee86baf52de04248a6438d119b7fb https://www.encodeproject.org/files/ENCFF033VMH/@@download/ENCFF033VMH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF532ZHO bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF811ZQF 1115728667 ENCODE Processing Pipeline dcebf1ac15da8b771ffe26d199938582 https://www.encodeproject.org/files/ENCFF532ZHO/@@download/ENCFF532ZHO.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF806KRN bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 76 ENCFF266MCK, ENCFF807MUK 1044890524 ENCODE Processing Pipeline d839257ba9ccccdc4c58dd13e745daad https://www.encodeproject.org/files/ENCFF806KRN/@@download/ENCFF806KRN.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF328AHJ bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 76 ENCFF266MCK, ENCFF643CGH 1045683657 ENCODE Processing Pipeline 8844b1d4e3ff63672f7b4a20c762c14f https://www.encodeproject.org/files/ENCFF328AHJ/@@download/ENCFF328AHJ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF282JCA bigWig signal p-value ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF033VMH 525385769 ENCODE Processing Pipeline f016b8c89038e99ddd5f79fcbe0c1478 https://www.encodeproject.org/files/ENCFF282JCA/@@download/ENCFF282JCA.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF760XUN bigWig fold change over control ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF328AHJ 414201581 ENCODE Processing Pipeline 70e2b388052a40261857795ba03c0e84 https://www.encodeproject.org/files/ENCFF760XUN/@@download/ENCFF760XUN.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178NGR bigWig signal p-value ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF328AHJ 439749089 ENCODE Processing Pipeline 78c7ea47ca0c495e96b674dad017cd51 https://www.encodeproject.org/files/ENCFF178NGR/@@download/ENCFF178NGR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF998IXB bigWig signal p-value ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF033VMH, ENCFF328AHJ 655434242 ENCODE Processing Pipeline 0aa59cb0268260c8257f07c45d4e7584 https://www.encodeproject.org/files/ENCFF998IXB/@@download/ENCFF998IXB.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF336ESH bigWig fold change over control ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF033VMH 463459598 ENCODE Processing Pipeline 76f07800a287971ccf45f98d0456c2c0 https://www.encodeproject.org/files/ENCFF336ESH/@@download/ENCFF336ESH.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF424PYM bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF033VMH 5598038 ENCODE Processing Pipeline 6a038a61c5cf14ad48cc3e88d8ee65d0 https://www.encodeproject.org/files/ENCFF424PYM/@@download/ENCFF424PYM.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF551KYF bigBed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF424PYM 13151380 ENCODE Processing Pipeline 6d8fff7697cf0e061768e65d54dca306 https://www.encodeproject.org/files/ENCFF551KYF/@@download/ENCFF551KYF.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF597CWQ bigWig fold change over control ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF033VMH, ENCFF328AHJ 727354937 ENCODE Processing Pipeline 72b8e1c6a4e5a649560c1a4f03b4f8d4 https://www.encodeproject.org/files/ENCFF597CWQ/@@download/ENCFF597CWQ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF434RLK bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF033VMH, ENCFF328AHJ 5525664 ENCODE Processing Pipeline 49237669cb92f4d7a727825ac30ba912 https://www.encodeproject.org/files/ENCFF434RLK/@@download/ENCFF434RLK.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF418QKJ bigBed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF869GAY 11007912 ENCODE Processing Pipeline fb425c77c1ec43e73d977e8b1eb1f1b4 https://www.encodeproject.org/files/ENCFF418QKJ/@@download/ENCFF418QKJ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF869GAY bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF328AHJ 4933834 ENCODE Processing Pipeline 7101a27574cf8dd2598dbdb26e8f9d94 https://www.encodeproject.org/files/ENCFF869GAY/@@download/ENCFF869GAY.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF213KNR bigBed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF434RLK 12101503 ENCODE Processing Pipeline 7c05830102643192e58c0c5d080f4659 https://www.encodeproject.org/files/ENCFF213KNR/@@download/ENCFF213KNR.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF499ZBA bed narrowPeak optimal idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF424PYM, ENCFF434RLK, ENCFF869GAY 228036 ENCODE Processing Pipeline ef10d729f22f830013e00cf1b8659d85 https://www.encodeproject.org/files/ENCFF499ZBA/@@download/ENCFF499ZBA.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF793YUM bed narrowPeak conservative idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF424PYM, ENCFF434RLK, ENCFF869GAY 203765 ENCODE Processing Pipeline 0d5ffd63997bc31540857c5ab86981d8 https://www.encodeproject.org/files/ENCFF793YUM/@@download/ENCFF793YUM.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF654KQL bigBed narrowPeak optimal idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF499ZBA 436930 ENCODE Processing Pipeline 3f7bfec8864874f702597dca0d2b6fa2 https://www.encodeproject.org/files/ENCFF654KQL/@@download/ENCFF654KQL.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF208WLD bigBed narrowPeak conservative idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF793YUM 401328 ENCODE Processing Pipeline 073737ba4ca7b88694d713d1d84d7346 https://www.encodeproject.org/files/ENCFF208WLD/@@download/ENCFF208WLD.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF933ELS bigWig signal p-value ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF806KRN 1089728208 ENCODE Processing Pipeline b9e50e109dbfe24e50443000abc89f16 https://www.encodeproject.org/files/ENCFF933ELS/@@download/ENCFF933ELS.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF427ZIB bigWig signal p-value ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF532ZHO 1126843506 ENCODE Processing Pipeline 5baa819f6a793ae80f30823deb2605fc https://www.encodeproject.org/files/ENCFF427ZIB/@@download/ENCFF427ZIB.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF200ONF bigWig signal p-value ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF532ZHO, ENCFF806KRN 1391518007 ENCODE Processing Pipeline f3e24424a71ee425b0be3b87f847d436 https://www.encodeproject.org/files/ENCFF200ONF/@@download/ENCFF200ONF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF067BYU bigWig fold change over control ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF806KRN 780740379 ENCODE Processing Pipeline b351f539f8d3c3deed24110494e3b387 https://www.encodeproject.org/files/ENCFF067BYU/@@download/ENCFF067BYU.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF603BQQ bigWig fold change over control ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF532ZHO 820847986 ENCODE Processing Pipeline 364f0fc755b4f3d4a3096607e221e063 https://www.encodeproject.org/files/ENCFF603BQQ/@@download/ENCFF603BQQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402UZM bigWig fold change over control ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF532ZHO, ENCFF806KRN 1283767101 ENCODE Processing Pipeline d1cfd75e1e10b165e18f797159266b6d https://www.encodeproject.org/files/ENCFF402UZM/@@download/ENCFF402UZM.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF216KHO bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF806KRN 5910176 ENCODE Processing Pipeline 40d3d7514044efd8001f18fd7caf080a https://www.encodeproject.org/files/ENCFF216KHO/@@download/ENCFF216KHO.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF579PAC bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF532ZHO 6432380 ENCODE Processing Pipeline c792771f1312fb4ff36db6c98b6112c7 https://www.encodeproject.org/files/ENCFF579PAC/@@download/ENCFF579PAC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF752TYG bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF532ZHO, ENCFF806KRN 6700415 ENCODE Processing Pipeline f9b9dd03b54650d75b0d1989526ece76 https://www.encodeproject.org/files/ENCFF752TYG/@@download/ENCFF752TYG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454PEW bigBed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF216KHO 11353944 ENCODE Processing Pipeline 219dbec8e3e1ed4eb00a0919c4a9be5a https://www.encodeproject.org/files/ENCFF454PEW/@@download/ENCFF454PEW.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF811OKV bigBed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF579PAC 13298009 ENCODE Processing Pipeline d95610720e78e562e52f57296d38ea21 https://www.encodeproject.org/files/ENCFF811OKV/@@download/ENCFF811OKV.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF865FZV bigBed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF752TYG 13395870 ENCODE Processing Pipeline c96ce1b83768e2fb7fd82aa29ee6e461 https://www.encodeproject.org/files/ENCFF865FZV/@@download/ENCFF865FZV.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF840XRU bed narrowPeak conservative idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF216KHO, ENCFF579PAC, ENCFF752TYG 191814 ENCODE Processing Pipeline 227077a6fa382645eaa3007e51b9b303 https://www.encodeproject.org/files/ENCFF840XRU/@@download/ENCFF840XRU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF330XSA bigBed narrowPeak conservative idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF840XRU 393612 ENCODE Processing Pipeline 54de2aa5aa92452ee243e25af950898f https://www.encodeproject.org/files/ENCFF330XSA/@@download/ENCFF330XSA.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF994CIT bed narrowPeak optimal idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF216KHO, ENCFF579PAC, ENCFF752TYG 214891 ENCODE Processing Pipeline b7bb80612164aea6a992366b2378b2da https://www.encodeproject.org/files/ENCFF994CIT/@@download/ENCFF994CIT.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF897NDR bigBed narrowPeak optimal idr thresholded peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF994CIT 426738 ENCODE Processing Pipeline 405004ce1ad70c6f090f9a35f8fadabd https://www.encodeproject.org/files/ENCFF897NDR/@@download/ENCFF897NDR.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF953DFO bam unfiltered alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF135KOW, ENCFF789UDV, ENCFF807MUK 6905998093 ENCODE Processing Pipeline 386a82967e1ab240658a72c81c54bb27 https://www.encodeproject.org/files/ENCFF953DFO/@@download/ENCFF953DFO.bam hg19 released ENCFF732HKQ bam unfiltered alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF755BUR, ENCFF807MUK, ENCFF994RSC 4970494837 ENCODE Processing Pipeline 5d154c2727a739cc99b06ae8ad49dd83 https://www.encodeproject.org/files/ENCFF732HKQ/@@download/ENCFF732HKQ.bam hg19 released ENCFF994RSC fastq reads ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF755BUR 2290264619 Michael Snyder, Stanford 8b92407fef037e90761403b436d595ff SRA:SRR5111112 https://www.encodeproject.org/files/ENCFF994RSC/@@download/ENCFF994RSC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF135KOW fastq reads ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF789UDV 3204019008 Michael Snyder, Stanford e1c56285e82a750fe68d3934f374127f SRA:SRR5111113 https://www.encodeproject.org/files/ENCFF135KOW/@@download/ENCFF135KOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF789UDV fastq reads ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF135KOW 3309415447 Michael Snyder, Stanford 25fdbda495ac6ce7f81164978eb34478 SRA:SRR5111113 https://www.encodeproject.org/files/ENCFF789UDV/@@download/ENCFF789UDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF755BUR fastq reads ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF994RSC 2280300971 Michael Snyder, Stanford 49080364d184a8d1b76a5846f90268b8 SRA:SRR5111112 https://www.encodeproject.org/files/ENCFF755BUR/@@download/ENCFF755BUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF463KKL bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF755BUR, ENCFF807MUK, ENCFF994RSC 4179492222 ENCODE Processing Pipeline a284c16e0a5dbfbabffcb3fd98d1faae https://www.encodeproject.org/files/ENCFF463KKL/@@download/ENCFF463KKL.bam hg19 released ENCFF069MNA bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF135KOW, ENCFF789UDV, ENCFF807MUK 5836136796 ENCODE Processing Pipeline a237c13c073e0a8b797b7bb3e230f558 https://www.encodeproject.org/files/ENCFF069MNA/@@download/ENCFF069MNA.bam hg19 released ENCFF265KGI bigWig signal p-value ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF463KKL, ENCFF581ZJL 1149451474 ENCODE Processing Pipeline 9df1beba656cde3b27ed83528e73e70d https://www.encodeproject.org/files/ENCFF265KGI/@@download/ENCFF265KGI.bigWig hg19 released ENCFF261XKQ bigWig signal p-value ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF069MNA, ENCFF463KKL, ENCFF581ZJL 1817137750 ENCODE Processing Pipeline 83d4ad038105696f9176dc103d3a29ff https://www.encodeproject.org/files/ENCFF261XKQ/@@download/ENCFF261XKQ.bigWig hg19 released ENCFF006TVX bigWig fold change over control ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF463KKL, ENCFF581ZJL 1126095141 ENCODE Processing Pipeline 70e853f102c3f791bc9a945a44c53753 https://www.encodeproject.org/files/ENCFF006TVX/@@download/ENCFF006TVX.bigWig hg19 released ENCFF024YIP bigWig fold change over control ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF069MNA, ENCFF463KKL, ENCFF581ZJL 2266759809 ENCODE Processing Pipeline 5254d0554a109947eacec3f5e4ba630c https://www.encodeproject.org/files/ENCFF024YIP/@@download/ENCFF024YIP.bigWig hg19 released ENCFF103HMX bam unfiltered alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF755BUR, ENCFF994RSC 4975071367 ENCODE Processing Pipeline 32479ee51bfcc9cfb6fd3cccd6100f68 https://www.encodeproject.org/files/ENCFF103HMX/@@download/ENCFF103HMX.bam GRCh38 released ENCFF819AWT bam unfiltered alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF135KOW, ENCFF643CGH, ENCFF789UDV 6912401595 ENCODE Processing Pipeline 36d705137df5c4374e8618331d482a49 https://www.encodeproject.org/files/ENCFF819AWT/@@download/ENCFF819AWT.bam GRCh38 released ENCFF887LAD bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF755BUR, ENCFF994RSC 4181847246 ENCODE Processing Pipeline 3e880059026af4e9b45523dcf0ced39e https://www.encodeproject.org/files/ENCFF887LAD/@@download/ENCFF887LAD.bam GRCh38 released ENCFF777ZPZ bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF135KOW, ENCFF643CGH, ENCFF789UDV 5841572111 ENCODE Processing Pipeline b584ff9e5d6b85f057e0a51d75ff2542 https://www.encodeproject.org/files/ENCFF777ZPZ/@@download/ENCFF777ZPZ.bam GRCh38 released ENCFF452WPS bigWig signal p-value ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF887LAD, ENCFF910IKB 1231960232 ENCODE Processing Pipeline 712c692c8f73e63f26d6730525b30921 https://www.encodeproject.org/files/ENCFF452WPS/@@download/ENCFF452WPS.bigWig GRCh38 released ENCFF108YGO bigWig signal p-value ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF777ZPZ 1097199274 ENCODE Processing Pipeline a029334211fbcd1978e30ccc4b9fa7c7 https://www.encodeproject.org/files/ENCFF108YGO/@@download/ENCFF108YGO.bigWig GRCh38 released ENCFF743NEN bigWig signal p-value ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF777ZPZ, ENCFF887LAD, ENCFF910IKB 2109579818 ENCODE Processing Pipeline eaf10d4a377179b48d8d70c0bf2195fb https://www.encodeproject.org/files/ENCFF743NEN/@@download/ENCFF743NEN.bigWig GRCh38 released ENCFF113JAR bigWig fold change over control ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF887LAD, ENCFF910IKB 1121765085 ENCODE Processing Pipeline 80bdfa4f98a38d6a1998f545fb9435bb https://www.encodeproject.org/files/ENCFF113JAR/@@download/ENCFF113JAR.bigWig GRCh38 released ENCFF804SAH bigWig fold change over control ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF777ZPZ 1381905865 ENCODE Processing Pipeline 792d4e6bef3cc107f585a71c803e8a9c https://www.encodeproject.org/files/ENCFF804SAH/@@download/ENCFF804SAH.bigWig GRCh38 released ENCFF720MIG bigWig fold change over control ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF777ZPZ, ENCFF887LAD, ENCFF910IKB 2268996558 ENCODE Processing Pipeline bad5697274dc2fc4ab61a583d04940f4 https://www.encodeproject.org/files/ENCFF720MIG/@@download/ENCFF720MIG.bigWig GRCh38 released ENCFF767VQM bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF887LAD, ENCFF910IKB 6707535 ENCODE Processing Pipeline f275d65537634a8adf1ddae792b22340 https://www.encodeproject.org/files/ENCFF767VQM/@@download/ENCFF767VQM.bed.gz GRCh38 released ENCFF959DNJ bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF777ZPZ 7042364 ENCODE Processing Pipeline 55ad10afb1c93666b48ca7f83f5eac4d https://www.encodeproject.org/files/ENCFF959DNJ/@@download/ENCFF959DNJ.bed.gz GRCh38 released ENCFF442TDR bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF777ZPZ, ENCFF887LAD, ENCFF910IKB 7287634 ENCODE Processing Pipeline 279736b0d88de11871852ef1e18ec977 https://www.encodeproject.org/files/ENCFF442TDR/@@download/ENCFF442TDR.bed.gz GRCh38 released ENCFF554JLD bigBed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF767VQM 13157762 ENCODE Processing Pipeline 231574885fab65de069fdcf39799d7ac https://www.encodeproject.org/files/ENCFF554JLD/@@download/ENCFF554JLD.bigBed GRCh38 released ENCFF525YCB bigBed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF959DNJ 13051305 ENCODE Processing Pipeline 3676db0cc39806b9925c764e68fb0d42 https://www.encodeproject.org/files/ENCFF525YCB/@@download/ENCFF525YCB.bigBed GRCh38 released ENCFF316KQT bigBed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF442TDR 12974232 ENCODE Processing Pipeline fc185c68c7492eb61a80235962f9f091 https://www.encodeproject.org/files/ENCFF316KQT/@@download/ENCFF316KQT.bigBed GRCh38 released ENCFF037UMP bed narrowPeak conservative idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF442TDR, ENCFF767VQM, ENCFF959DNJ 378663 ENCODE Processing Pipeline c26fa1023ac535b700fd89dca658cdbd https://www.encodeproject.org/files/ENCFF037UMP/@@download/ENCFF037UMP.bed.gz GRCh38 released ENCFF514UVM bigBed narrowPeak conservative idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF037UMP 904929 ENCODE Processing Pipeline 55d183c8a757821f21a5d78d872d118a https://www.encodeproject.org/files/ENCFF514UVM/@@download/ENCFF514UVM.bigBed GRCh38 released ENCFF010AIG bed narrowPeak optimal idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF442TDR, ENCFF767VQM, ENCFF959DNJ 476775 ENCODE Processing Pipeline 1066a28ac5d170f198afbf05a1d694b8 https://www.encodeproject.org/files/ENCFF010AIG/@@download/ENCFF010AIG.bed.gz GRCh38 released ENCFF979ZPM bigBed narrowPeak optimal idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF010AIG 1086369 ENCODE Processing Pipeline 60d114936f8e24dbfb64f4fa727ddff2 https://www.encodeproject.org/files/ENCFF979ZPM/@@download/ENCFF979ZPM.bigBed GRCh38 released ENCFF768MUF bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF069MNA 7062306 ENCODE Processing Pipeline 134d35f18b36ac678477cb75e19a27a2 https://www.encodeproject.org/files/ENCFF768MUF/@@download/ENCFF768MUF.bed.gz hg19 released ENCFF049XZY bigWig signal p-value ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF069MNA 1353025363 ENCODE Processing Pipeline 74b1295f56fe0db369a59540488f7f6a https://www.encodeproject.org/files/ENCFF049XZY/@@download/ENCFF049XZY.bigWig hg19 released ENCFF388SCV bigWig fold change over control ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF069MNA 1395035813 ENCODE Processing Pipeline f8ebdaa94c530e942e4a86c50ea36c3b https://www.encodeproject.org/files/ENCFF388SCV/@@download/ENCFF388SCV.bigWig hg19 released ENCFF743CIS bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF463KKL, ENCFF581ZJL 6703465 ENCODE Processing Pipeline f4e5c9c63dc8c1100f49bb50b9cad7b2 https://www.encodeproject.org/files/ENCFF743CIS/@@download/ENCFF743CIS.bed.gz hg19 released ENCFF884QJV bigBed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF743CIS 13144485 ENCODE Processing Pipeline 05aa64fc21791282900629ae1d19560f https://www.encodeproject.org/files/ENCFF884QJV/@@download/ENCFF884QJV.bigBed hg19 released ENCFF712UDU bigBed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF948VWR 12966381 ENCODE Processing Pipeline 2885820922a25750497ba604f44f209d https://www.encodeproject.org/files/ENCFF712UDU/@@download/ENCFF712UDU.bigBed hg19 released ENCFF385NDP bigBed narrowPeak conservative idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF460XQR 897039 ENCODE Processing Pipeline 8b953426fd03e471eead1c88fc8cf2d0 https://www.encodeproject.org/files/ENCFF385NDP/@@download/ENCFF385NDP.bigBed hg19 released ENCFF039EJO bigBed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF768MUF 13038121 ENCODE Processing Pipeline a5f311d677cd12b7e76f340e2cc65e22 https://www.encodeproject.org/files/ENCFF039EJO/@@download/ENCFF039EJO.bigBed hg19 released ENCFF948VWR bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF069MNA, ENCFF463KKL, ENCFF581ZJL 7288631 ENCODE Processing Pipeline fd4e7234862d196afe25c7a47a39f3bc https://www.encodeproject.org/files/ENCFF948VWR/@@download/ENCFF948VWR.bed.gz hg19 released ENCFF460XQR bed narrowPeak conservative idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF743CIS, ENCFF768MUF, ENCFF948VWR 376774 ENCODE Processing Pipeline 2af86103d1a85a8795d53e5b6bd3a118 https://www.encodeproject.org/files/ENCFF460XQR/@@download/ENCFF460XQR.bed.gz hg19 released ENCFF440JJW bed narrowPeak optimal idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF743CIS, ENCFF768MUF, ENCFF948VWR 474010 ENCODE Processing Pipeline 8e35e0276097b2e8621be227dd056368 https://www.encodeproject.org/files/ENCFF440JJW/@@download/ENCFF440JJW.bed.gz hg19 released ENCFF627JPV bigBed narrowPeak optimal idr thresholded peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF440JJW 1076400 ENCODE Processing Pipeline ee077bbb99247926a3da239b6d0348e8 https://www.encodeproject.org/files/ENCFF627JPV/@@download/ENCFF627JPV.bigBed hg19 released ENCFF937ICR fastq reads ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2054897149 Richard Myers, HAIB b7a28ad1f869c9273a026c9aa48cc4cf SRA:SRR5339014 https://www.encodeproject.org/files/ENCFF937ICR/@@download/ENCFF937ICR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425ZYO fastq reads ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2074846644 Richard Myers, HAIB 8821c7b50d75f694ce22cc288fa0d87f SRA:SRR5339015 https://www.encodeproject.org/files/ENCFF425ZYO/@@download/ENCFF425ZYO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428GPR bam unfiltered alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF937ICR 2279923069 ENCODE Processing Pipeline 5664f348d6b8f0f69182f5b15dcfaa98 https://www.encodeproject.org/files/ENCFF428GPR/@@download/ENCFF428GPR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF942RRM bam unfiltered alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF425ZYO, ENCFF807MUK 2290347522 ENCODE Processing Pipeline 13a4be62c9cc3d88af2ecc0ac3c6ccfd https://www.encodeproject.org/files/ENCFF942RRM/@@download/ENCFF942RRM.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851EKN bam unfiltered alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF425ZYO, ENCFF643CGH 2294893796 ENCODE Processing Pipeline b53b6ae6b18cad46209128d8f6f8b9d3 https://www.encodeproject.org/files/ENCFF851EKN/@@download/ENCFF851EKN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF322QSG bam unfiltered alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF937ICR 2274836118 ENCODE Processing Pipeline f47ba039e176527f7f4b0af169cf8ed6 https://www.encodeproject.org/files/ENCFF322QSG/@@download/ENCFF322QSG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF450IPE bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF937ICR 1746260993 ENCODE Processing Pipeline 6603a67b4b47e728e70f639daf165f53 https://www.encodeproject.org/files/ENCFF450IPE/@@download/ENCFF450IPE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF322PIR bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF425ZYO, ENCFF807MUK 1690147510 ENCODE Processing Pipeline c19842c9124092d78e2669d8de2fbdc1 https://www.encodeproject.org/files/ENCFF322PIR/@@download/ENCFF322PIR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF155WNX bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF937ICR 1745311423 ENCODE Processing Pipeline be861267a253dea4b2e3fe8f43451e5e https://www.encodeproject.org/files/ENCFF155WNX/@@download/ENCFF155WNX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515VII bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF425ZYO, ENCFF643CGH 1690927208 ENCODE Processing Pipeline c086ca727921e6a702f73f05595d8f8a https://www.encodeproject.org/files/ENCFF515VII/@@download/ENCFF515VII.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF177FUZ bigWig signal p-value ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF515VII 627985723 ENCODE Processing Pipeline e9d9ddac6e6cf743b128a2f3e97406f2 https://www.encodeproject.org/files/ENCFF177FUZ/@@download/ENCFF177FUZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684NGK bigWig signal p-value ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF450IPE 616808126 ENCODE Processing Pipeline 7fb8086d2a6c9be937f9d9ce46ea284f https://www.encodeproject.org/files/ENCFF684NGK/@@download/ENCFF684NGK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399ZCX bigWig signal p-value ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF450IPE, ENCFF515VII 671539813 ENCODE Processing Pipeline 4d656ccf1565b035f8728c2b78c55c22 https://www.encodeproject.org/files/ENCFF399ZCX/@@download/ENCFF399ZCX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF528MVJ bigWig fold change over control ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF450IPE 612414568 ENCODE Processing Pipeline a88bd740af75a8966f7ea4faeba8ee70 https://www.encodeproject.org/files/ENCFF528MVJ/@@download/ENCFF528MVJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF781GNL bigWig fold change over control ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF515VII 618829260 ENCODE Processing Pipeline f6ddfe7430ad891f67fc0f2aa38a8cc1 https://www.encodeproject.org/files/ENCFF781GNL/@@download/ENCFF781GNL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF508TIU bigWig fold change over control ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF450IPE, ENCFF515VII 1062531230 ENCODE Processing Pipeline 7918d7dd61c5164ae90d5a6cfd012677 https://www.encodeproject.org/files/ENCFF508TIU/@@download/ENCFF508TIU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF895ZDC bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF515VII 6143504 ENCODE Processing Pipeline 73e68e2f4d168ba1ecaf681f8660c421 https://www.encodeproject.org/files/ENCFF895ZDC/@@download/ENCFF895ZDC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF539NYK bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF450IPE 6280636 ENCODE Processing Pipeline 57eab34951476de3aa6e1397da17a110 https://www.encodeproject.org/files/ENCFF539NYK/@@download/ENCFF539NYK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF184JMI bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF450IPE, ENCFF515VII 7141730 ENCODE Processing Pipeline 26f10cccf4825b2aac35dbf9737b1685 https://www.encodeproject.org/files/ENCFF184JMI/@@download/ENCFF184JMI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF294FYH bigBed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF539NYK 13102856 ENCODE Processing Pipeline a2f1952abf2bdf3195cea300275bfb85 https://www.encodeproject.org/files/ENCFF294FYH/@@download/ENCFF294FYH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF791BEH bigBed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF895ZDC 13019690 ENCODE Processing Pipeline cf0ce176b61837873a91ff054d80527e https://www.encodeproject.org/files/ENCFF791BEH/@@download/ENCFF791BEH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF476WVI bigBed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF184JMI 12776884 ENCODE Processing Pipeline 57aaee802ca8f592af19c8e7f1afd1f5 https://www.encodeproject.org/files/ENCFF476WVI/@@download/ENCFF476WVI.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF236SLK bed narrowPeak conservative idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF184JMI, ENCFF419RSJ, ENCFF539NYK, ENCFF895ZDC 220501 ENCODE Processing Pipeline e51075c0f00c13fbcac1f330329d44ab https://www.encodeproject.org/files/ENCFF236SLK/@@download/ENCFF236SLK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF596GUJ bigBed narrowPeak conservative idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF236SLK 466451 ENCODE Processing Pipeline 3f613c6271e54c980e1ed43e1c4540fb https://www.encodeproject.org/files/ENCFF596GUJ/@@download/ENCFF596GUJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF443QKY bed narrowPeak optimal idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF184JMI, ENCFF419RSJ, ENCFF539NYK, ENCFF895ZDC 227508 ENCODE Processing Pipeline fa651ea6529181cd5b0bb48d8f7292bc https://www.encodeproject.org/files/ENCFF443QKY/@@download/ENCFF443QKY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF656RLK bigBed narrowPeak optimal idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF443QKY 479509 ENCODE Processing Pipeline d0f39fe1ee0e390ef3d0226fa37376c0 https://www.encodeproject.org/files/ENCFF656RLK/@@download/ENCFF656RLK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF371BVQ bigWig signal p-value ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF322PIR 1307945123 ENCODE Processing Pipeline 0b40a1ad74f33573926f43e03dd80c5d https://www.encodeproject.org/files/ENCFF371BVQ/@@download/ENCFF371BVQ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF534UBO bigWig signal p-value ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF155WNX, ENCFF203ABR 1311845782 ENCODE Processing Pipeline edfe06e46812085d2742a6495748b45c https://www.encodeproject.org/files/ENCFF534UBO/@@download/ENCFF534UBO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF785WAI bigWig signal p-value ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF155WNX, ENCFF203ABR, ENCFF322PIR 1706707490 ENCODE Processing Pipeline ecf13be7a404ced14dd8c41c1fd65fe4 https://www.encodeproject.org/files/ENCFF785WAI/@@download/ENCFF785WAI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF620VVL bigWig fold change over control ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF322PIR 1256794445 ENCODE Processing Pipeline a9cd07c8759f72606232526b3725c577 https://www.encodeproject.org/files/ENCFF620VVL/@@download/ENCFF620VVL.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF634GOR bigWig fold change over control ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF155WNX, ENCFF203ABR 1126392142 ENCODE Processing Pipeline a3de5d984714e00ff0321ef44cca34de https://www.encodeproject.org/files/ENCFF634GOR/@@download/ENCFF634GOR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF607AJC bigWig fold change over control ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF155WNX, ENCFF203ABR, ENCFF322PIR 1711426658 ENCODE Processing Pipeline 0a702efd10fe785300eb11b21ca9e37d https://www.encodeproject.org/files/ENCFF607AJC/@@download/ENCFF607AJC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF770ZZB bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF322PIR 7088347 ENCODE Processing Pipeline 410811b01a5019cba7effd86538b328d https://www.encodeproject.org/files/ENCFF770ZZB/@@download/ENCFF770ZZB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF671LXX bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF155WNX, ENCFF203ABR 6961663 ENCODE Processing Pipeline 82ac8059f249cf7aa63a380c293bb1d3 https://www.encodeproject.org/files/ENCFF671LXX/@@download/ENCFF671LXX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF589JFZ bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF155WNX, ENCFF203ABR, ENCFF322PIR 7185541 ENCODE Processing Pipeline 924b8f006ddd79c4eafaeb76ac32847b https://www.encodeproject.org/files/ENCFF589JFZ/@@download/ENCFF589JFZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF167LYS bigBed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF589JFZ 12874080 ENCODE Processing Pipeline 7e99084d78bad9b2191ab8544824ee30 https://www.encodeproject.org/files/ENCFF167LYS/@@download/ENCFF167LYS.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF379XBT bigBed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF770ZZB 12807558 ENCODE Processing Pipeline e36a42356b24ec7e97192028a083134d https://www.encodeproject.org/files/ENCFF379XBT/@@download/ENCFF379XBT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF888KWN bigBed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF671LXX 13098746 ENCODE Processing Pipeline 3ca0317c04fe86a57249c0887eebb731 https://www.encodeproject.org/files/ENCFF888KWN/@@download/ENCFF888KWN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF543ZEV bigBed narrowPeak conservative idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF849QJW 342162 ENCODE Processing Pipeline db3409c90963888aa19db87aa718ffb7 https://www.encodeproject.org/files/ENCFF543ZEV/@@download/ENCFF543ZEV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF849QJW bed narrowPeak conservative idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF589JFZ, ENCFF671LXX, ENCFF770ZZB 174315 ENCODE Processing Pipeline 8027bb74ebdf744068850f88a33b3915 https://www.encodeproject.org/files/ENCFF849QJW/@@download/ENCFF849QJW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF338ZJP bed narrowPeak optimal idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF589JFZ, ENCFF671LXX, ENCFF770ZZB 193379 ENCODE Processing Pipeline ea0a8c0256e7684e4d6fa2c393c3410f https://www.encodeproject.org/files/ENCFF338ZJP/@@download/ENCFF338ZJP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF294UHO bigBed narrowPeak optimal idr thresholded peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF338ZJP 368952 ENCODE Processing Pipeline 15c8d0bcd10419bc572abf906cb9fca1 https://www.encodeproject.org/files/ENCFF294UHO/@@download/ENCFF294UHO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF295KRE bam unfiltered alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF951QJT 1513193250 ENCODE Processing Pipeline c745bd7c816c7b686e3a618311cd273e https://www.encodeproject.org/files/ENCFF295KRE/@@download/ENCFF295KRE.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF573OCZ bam unfiltered alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF517FOY, ENCFF807MUK 1825195062 ENCODE Processing Pipeline 7ebfb0117f55fd029b6d6f9c109d6d9e https://www.encodeproject.org/files/ENCFF573OCZ/@@download/ENCFF573OCZ.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF517FOY fastq reads ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 1708377481 Richard Myers, HAIB 8d8cfb2cdf967131b259cf84056e16ed SRA:SRR5338551 https://www.encodeproject.org/files/ENCFF517FOY/@@download/ENCFF517FOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF662ZML/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF951QJT fastq reads ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1419621765 Richard Myers, HAIB 93e11a01cdb1e9f4fda4712f2bdca940 SRA:SRR5338552 https://www.encodeproject.org/files/ENCFF951QJT/@@download/ENCFF951QJT.fastq.gz Illumina HiSeq 2000 /files/ENCFF662ZML/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF447GXR bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF951QJT 1124379905 ENCODE Processing Pipeline 4ce16986c12b9e820480a6482cee6b5c https://www.encodeproject.org/files/ENCFF447GXR/@@download/ENCFF447GXR.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF453OTB bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF517FOY, ENCFF807MUK 1382675458 ENCODE Processing Pipeline ef55c47fd0f5b9a31eafc5275ecdf585 https://www.encodeproject.org/files/ENCFF453OTB/@@download/ENCFF453OTB.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF272DEJ bigWig signal p-value ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF106GMN, ENCFF447GXR 425570010 ENCODE Processing Pipeline b2363e47a780e4b606b5040a38a59639 https://www.encodeproject.org/files/ENCFF272DEJ/@@download/ENCFF272DEJ.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF935BPG bigWig signal p-value ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF106GMN, ENCFF453OTB 436418243 ENCODE Processing Pipeline b2d570936846a0c6e412ed343ef6dbb5 https://www.encodeproject.org/files/ENCFF935BPG/@@download/ENCFF935BPG.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF536CSS bigWig signal p-value ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF106GMN, ENCFF447GXR, ENCFF453OTB 426005306 ENCODE Processing Pipeline 8a86fdd5cbae8681614ddc492e3b06e0 https://www.encodeproject.org/files/ENCFF536CSS/@@download/ENCFF536CSS.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF207BPT bigWig fold change over control ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF106GMN, ENCFF453OTB 595888722 ENCODE Processing Pipeline 1f0f7130f78e5650790583ee4e42e851 https://www.encodeproject.org/files/ENCFF207BPT/@@download/ENCFF207BPT.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF607UAB bigWig fold change over control ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF106GMN, ENCFF447GXR 516962003 ENCODE Processing Pipeline 013426194811c50a1ab3e8d7ff9df82c https://www.encodeproject.org/files/ENCFF607UAB/@@download/ENCFF607UAB.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF680TBL bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF106GMN, ENCFF453OTB 6263158 ENCODE Processing Pipeline 7a2f2b55d64a26d88a41a20d56e24a23 https://www.encodeproject.org/files/ENCFF680TBL/@@download/ENCFF680TBL.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF664TLP bigWig fold change over control ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF106GMN, ENCFF447GXR, ENCFF453OTB 893199334 ENCODE Processing Pipeline 1aefea032782722a20c9a74ddaf4d32e https://www.encodeproject.org/files/ENCFF664TLP/@@download/ENCFF664TLP.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF628ATN bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF106GMN, ENCFF447GXR 6500122 ENCODE Processing Pipeline c030a9fddb8205541b2c73d382c99b35 https://www.encodeproject.org/files/ENCFF628ATN/@@download/ENCFF628ATN.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF269RLS bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF106GMN, ENCFF447GXR, ENCFF453OTB 6925591 ENCODE Processing Pipeline 38d954454fba2800a9d89335e867471a https://www.encodeproject.org/files/ENCFF269RLS/@@download/ENCFF269RLS.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF510HMT bigBed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF680TBL 13227130 ENCODE Processing Pipeline d4bd4a2e89fbf3ba6e7788561d8aca99 https://www.encodeproject.org/files/ENCFF510HMT/@@download/ENCFF510HMT.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF854ZRJ bigBed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF628ATN 12928709 ENCODE Processing Pipeline 323cccd63a4d850da6e0d97c6fc9f6de https://www.encodeproject.org/files/ENCFF854ZRJ/@@download/ENCFF854ZRJ.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF126FRN bigBed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF269RLS 13006679 ENCODE Processing Pipeline 6b5511145c1b75fce8ed546292c77f64 https://www.encodeproject.org/files/ENCFF126FRN/@@download/ENCFF126FRN.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF639VNB bed narrowPeak conservative idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF269RLS, ENCFF628ATN, ENCFF680TBL 446959 ENCODE Processing Pipeline a22f5855cbbc46a2d81d39525fe1ab7b https://www.encodeproject.org/files/ENCFF639VNB/@@download/ENCFF639VNB.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF874EVS bed narrowPeak optimal idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF269RLS, ENCFF628ATN, ENCFF680TBL 477282 ENCODE Processing Pipeline be71f391e60994a025c0662242be27ff https://www.encodeproject.org/files/ENCFF874EVS/@@download/ENCFF874EVS.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF507QFU bigBed narrowPeak conservative idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF639VNB 1011394 ENCODE Processing Pipeline e865ddfbecceff3931d22a1346ffec8a https://www.encodeproject.org/files/ENCFF507QFU/@@download/ENCFF507QFU.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF801CZC bigBed narrowPeak optimal idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF874EVS 1070543 ENCODE Processing Pipeline 11bd45ec93d68b9acc46c25ced3085b9 https://www.encodeproject.org/files/ENCFF801CZC/@@download/ENCFF801CZC.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF635CNZ bam unfiltered alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF951QJT 1518163060 ENCODE Processing Pipeline 75f4e054c40463253f1e2778f9c264af https://www.encodeproject.org/files/ENCFF635CNZ/@@download/ENCFF635CNZ.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF357IEY bam unfiltered alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF517FOY, ENCFF643CGH 1830526549 ENCODE Processing Pipeline ae2dde6728bdd14d7d70964a214c73be https://www.encodeproject.org/files/ENCFF357IEY/@@download/ENCFF357IEY.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF777VSR bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF951QJT 1124336501 ENCODE Processing Pipeline b7956a84263b8d6fb18a05c360846a1e https://www.encodeproject.org/files/ENCFF777VSR/@@download/ENCFF777VSR.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF212FUJ bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF517FOY, ENCFF643CGH 1382711163 ENCODE Processing Pipeline 8b00d25d574359872f44689f37e73ca0 https://www.encodeproject.org/files/ENCFF212FUJ/@@download/ENCFF212FUJ.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF657MNX bigWig signal p-value ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF400VEC, ENCFF777VSR 426767811 ENCODE Processing Pipeline 2ba9f365370d5bf91a11c758cd5455c0 https://www.encodeproject.org/files/ENCFF657MNX/@@download/ENCFF657MNX.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF396AHR bigWig signal p-value ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF212FUJ, ENCFF400VEC 435669442 ENCODE Processing Pipeline b8eae4bd23a481ef1a47528424c5a8ca https://www.encodeproject.org/files/ENCFF396AHR/@@download/ENCFF396AHR.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF342TJK bigWig signal p-value ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF212FUJ, ENCFF400VEC, ENCFF777VSR 425802706 ENCODE Processing Pipeline 1e82162bea66104884c39483ba9fd4f5 https://www.encodeproject.org/files/ENCFF342TJK/@@download/ENCFF342TJK.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF112WSU bigWig fold change over control ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF400VEC, ENCFF777VSR 520224439 ENCODE Processing Pipeline 78f04140e7fc02a7f458642f7d11bc9b https://www.encodeproject.org/files/ENCFF112WSU/@@download/ENCFF112WSU.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF024NKG bigWig fold change over control ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF212FUJ, ENCFF400VEC 592641968 ENCODE Processing Pipeline d26da1d8c04e15b8a798033bcbb5e1cf https://www.encodeproject.org/files/ENCFF024NKG/@@download/ENCFF024NKG.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF571MPI bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF400VEC, ENCFF777VSR 6282086 ENCODE Processing Pipeline 2dbf56ef7a04673f7c341e1e6963d172 https://www.encodeproject.org/files/ENCFF571MPI/@@download/ENCFF571MPI.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF618PGT bigWig fold change over control ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF212FUJ, ENCFF400VEC, ENCFF777VSR 897613792 ENCODE Processing Pipeline 742a5b5a537a7885c08a2d297ddc0892 https://www.encodeproject.org/files/ENCFF618PGT/@@download/ENCFF618PGT.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF117JAR bigBed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF571MPI 12917744 ENCODE Processing Pipeline d9abe9e027c0992f38626af4546b4c59 https://www.encodeproject.org/files/ENCFF117JAR/@@download/ENCFF117JAR.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF742EMB bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF212FUJ, ENCFF400VEC, ENCFF777VSR 6788785 ENCODE Processing Pipeline 6a7c1052f236b3a059a9018de3820f66 https://www.encodeproject.org/files/ENCFF742EMB/@@download/ENCFF742EMB.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF943CQI bigBed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF742EMB 13006846 ENCODE Processing Pipeline 869470751bebea69e9e5e35cd33488e8 https://www.encodeproject.org/files/ENCFF943CQI/@@download/ENCFF943CQI.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF460HFK bigBed narrowPeak optimal idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF571FVN 1077981 ENCODE Processing Pipeline aa40bfaf37ab1797d7c935fe947de4bf https://www.encodeproject.org/files/ENCFF460HFK/@@download/ENCFF460HFK.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF904MXP bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF212FUJ, ENCFF400VEC 6037465 ENCODE Processing Pipeline 8bc5d9eed95ff29bd65519f3ba31bb66 https://www.encodeproject.org/files/ENCFF904MXP/@@download/ENCFF904MXP.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF637GUJ bigBed narrowPeak conservative idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF721SZO 1012537 ENCODE Processing Pipeline d5e231d62a374efbcf0066fdca5961b2 https://www.encodeproject.org/files/ENCFF637GUJ/@@download/ENCFF637GUJ.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF231EBL bigBed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF904MXP 13198899 ENCODE Processing Pipeline c9d4cb1b2353610331136190cbb615e8 https://www.encodeproject.org/files/ENCFF231EBL/@@download/ENCFF231EBL.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF721SZO bed narrowPeak conservative idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF571MPI, ENCFF742EMB, ENCFF904MXP 447184 ENCODE Processing Pipeline 6f2c22be0d6de81f373334ab401ce258 https://www.encodeproject.org/files/ENCFF721SZO/@@download/ENCFF721SZO.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF571FVN bed narrowPeak optimal idr thresholded peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF571MPI, ENCFF742EMB, ENCFF904MXP 480653 ENCODE Processing Pipeline f0299c5d851cd4599b4cec90cbd1fe6c https://www.encodeproject.org/files/ENCFF571FVN/@@download/ENCFF571FVN.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF141CJE bam unfiltered alignments ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF807MUK, ENCFF831BTD, ENCFF975DXM 4004065559 ENCODE Processing Pipeline ec5bec0ac142e5e1429a473f4c753cc2 https://www.encodeproject.org/files/ENCFF141CJE/@@download/ENCFF141CJE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF831BTD fastq reads ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF975DXM 1839721482 Michael Snyder, Stanford 6a1bbcbc314feed2a25df15b30c264be SRA:SRR6212662 https://www.encodeproject.org/files/ENCFF831BTD/@@download/ENCFF831BTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF999MXU/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF975DXM fastq reads ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF831BTD 1881455367 Michael Snyder, Stanford 6e93de326b85a8c415714e87a7ebe98c SRA:SRR6212662 https://www.encodeproject.org/files/ENCFF975DXM/@@download/ENCFF975DXM.fastq.gz Illumina HiSeq 2000 /files/ENCFF782FKW/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF419SAO bam alignments ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF807MUK, ENCFF831BTD, ENCFF975DXM 2843172744 ENCODE Processing Pipeline 8a809219f08d75386664178917a09439 https://www.encodeproject.org/files/ENCFF419SAO/@@download/ENCFF419SAO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF445AON bam unfiltered alignments ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF831BTD, ENCFF975DXM 4007639671 ENCODE Processing Pipeline a0902d46712afe26add8459d81cae747 https://www.encodeproject.org/files/ENCFF445AON/@@download/ENCFF445AON.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF024ELD bam alignments ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF831BTD, ENCFF975DXM 2847663416 ENCODE Processing Pipeline 55e7fb45b7a5b424d1ad74e9cb64df6d https://www.encodeproject.org/files/ENCFF024ELD/@@download/ENCFF024ELD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF196DYP bigWig signal p-value ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419SAO, ENCFF905DKC 707989251 ENCODE Processing Pipeline 0199cae8b6bad24d998685b3a0673fdd https://www.encodeproject.org/files/ENCFF196DYP/@@download/ENCFF196DYP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF010BAD bed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419SAO, ENCFF905DKC 4479586 ENCODE Processing Pipeline 3935b26910c7d2eca43ec8bf0f29a22f https://www.encodeproject.org/files/ENCFF010BAD/@@download/ENCFF010BAD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF113EVR bigBed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF010BAD 11168570 ENCODE Processing Pipeline 670548b5e4c1c6e9469ae8579674735a https://www.encodeproject.org/files/ENCFF113EVR/@@download/ENCFF113EVR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF971ILA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF010BAD 144943 ENCODE Processing Pipeline a9792d185d759a8e6ed8f94d90bb82de https://www.encodeproject.org/files/ENCFF971ILA/@@download/ENCFF971ILA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF873HKL bigWig fold change over control ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419SAO, ENCFF905DKC 718047615 ENCODE Processing Pipeline e8726a465e0f8a8aa3fd1d2faf985e1f https://www.encodeproject.org/files/ENCFF873HKL/@@download/ENCFF873HKL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF659NNQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF971ILA 269570 ENCODE Processing Pipeline 5c93782712ddad596dd7a52ac5afe836 https://www.encodeproject.org/files/ENCFF659NNQ/@@download/ENCFF659NNQ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF204QPK bed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF024ELD, ENCFF270YLG 4479573 ENCODE Processing Pipeline fe853c71ed9ff5f3be76d4a2675de7a9 https://www.encodeproject.org/files/ENCFF204QPK/@@download/ENCFF204QPK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF451ZIR bigBed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF204QPK 11179313 ENCODE Processing Pipeline 3c1b2f58153aa69075c2cb18cb3b7101 https://www.encodeproject.org/files/ENCFF451ZIR/@@download/ENCFF451ZIR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF691KEZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF687WWO 268886 ENCODE Processing Pipeline 57c0e0677d834915cdfaa12d5b8b43bf https://www.encodeproject.org/files/ENCFF691KEZ/@@download/ENCFF691KEZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF687WWO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF204QPK, ENCFF419RSJ 143351 ENCODE Processing Pipeline 3e852d86fe9efcfe61da9c340606b1d7 https://www.encodeproject.org/files/ENCFF687WWO/@@download/ENCFF687WWO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF569BVF bigWig signal p-value ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF024ELD, ENCFF270YLG 707818266 ENCODE Processing Pipeline 336863b06940087dc4c1153f5c0b3cf6 https://www.encodeproject.org/files/ENCFF569BVF/@@download/ENCFF569BVF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF967TUN bigWig fold change over control ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF024ELD, ENCFF270YLG 721072465 ENCODE Processing Pipeline c3385b090b2686738539fd7d46c09f64 https://www.encodeproject.org/files/ENCFF967TUN/@@download/ENCFF967TUN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF883DYX fastq reads ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 1 ENCFF516YRH 2361227635 Michael Snyder, Stanford 51dc3a14a01df155b0c7667253e47d05 SRA:SRR6213958 https://www.encodeproject.org/files/ENCFF883DYX/@@download/ENCFF883DYX.fastq.gz Illumina HiSeq 4000 /files/ENCFF850NEC/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF516YRH fastq reads ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 2 ENCFF883DYX 2667711199 Michael Snyder, Stanford 28b70f7ed6f341b8654f0d884003f3b1 SRA:SRR6213958 https://www.encodeproject.org/files/ENCFF516YRH/@@download/ENCFF516YRH.fastq.gz Illumina HiSeq 4000 /files/ENCFF364SOU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF303VQI bam unfiltered alignments ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 100 ENCFF516YRH, ENCFF807MUK, ENCFF883DYX 4707413141 ENCODE Processing Pipeline 651c96efbf3c252ad5252bee3bc0a4a7 https://www.encodeproject.org/files/ENCFF303VQI/@@download/ENCFF303VQI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF299XGS bam unfiltered alignments ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 100 ENCFF516YRH, ENCFF643CGH, ENCFF883DYX 4709793335 ENCODE Processing Pipeline 8dbe9bc940ff44b72332b9cf7f841e76 https://www.encodeproject.org/files/ENCFF299XGS/@@download/ENCFF299XGS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF574DCD bam alignments ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 100 ENCFF516YRH, ENCFF807MUK, ENCFF883DYX 3547473121 ENCODE Processing Pipeline c5636b8d56abb45b87bbcb872e1597a8 https://www.encodeproject.org/files/ENCFF574DCD/@@download/ENCFF574DCD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF604KKL bam alignments ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 100 ENCFF516YRH, ENCFF643CGH, ENCFF883DYX 3552919639 ENCODE Processing Pipeline b114092c9feeb0cd040227c80bd46b6e https://www.encodeproject.org/files/ENCFF604KKL/@@download/ENCFF604KKL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF498TTP bigWig signal p-value ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF574DCD, ENCFF942GWO 1061686130 ENCODE Processing Pipeline 60379e12f8ab5438788325ecfc370204 https://www.encodeproject.org/files/ENCFF498TTP/@@download/ENCFF498TTP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF587CLH bigWig fold change over control ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF574DCD, ENCFF942GWO 1194227761 ENCODE Processing Pipeline c449391d6e4d6368e7f110c4f3314ec7 https://www.encodeproject.org/files/ENCFF587CLH/@@download/ENCFF587CLH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF372LOW bed narrowPeak peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF574DCD, ENCFF942GWO 6235445 ENCODE Processing Pipeline 43b45774277a43c65a31f96f9d84a899 https://www.encodeproject.org/files/ENCFF372LOW/@@download/ENCFF372LOW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF970NED bigBed narrowPeak peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF372LOW 11438051 ENCODE Processing Pipeline 9725f76421060fb0ec54831e5da8d3dc https://www.encodeproject.org/files/ENCFF970NED/@@download/ENCFF970NED.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF025PNK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF678WCZ 819578 ENCODE Processing Pipeline aa923b776b8f129e46ec143b19a49322 https://www.encodeproject.org/files/ENCFF025PNK/@@download/ENCFF025PNK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF678WCZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF372LOW 364623 ENCODE Processing Pipeline 92fb849e0290b8bf5a7d6114c3ccb2ce https://www.encodeproject.org/files/ENCFF678WCZ/@@download/ENCFF678WCZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF264QBV bigWig signal p-value ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF604KKL, ENCFF662BKD 1074168635 ENCODE Processing Pipeline 0930483087589845bc222d07d3ad774f https://www.encodeproject.org/files/ENCFF264QBV/@@download/ENCFF264QBV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF527LKH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF674MDG 811759 ENCODE Processing Pipeline 1669f1cd2ad5a3d3826b73a5f61c3195 https://www.encodeproject.org/files/ENCFF527LKH/@@download/ENCFF527LKH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF493VXF bigWig fold change over control ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF604KKL, ENCFF662BKD 1197810025 ENCODE Processing Pipeline a195f8871ec130e591d35cd138dced34 https://www.encodeproject.org/files/ENCFF493VXF/@@download/ENCFF493VXF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF288EXD bed narrowPeak peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF604KKL, ENCFF662BKD 6222445 ENCODE Processing Pipeline 5727a7f58409b697067be6923b168f83 https://www.encodeproject.org/files/ENCFF288EXD/@@download/ENCFF288EXD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF423RHT bigBed narrowPeak peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF288EXD 11433672 ENCODE Processing Pipeline 137c898edc9761fbf25fa68902931724 https://www.encodeproject.org/files/ENCFF423RHT/@@download/ENCFF423RHT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF674MDG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF288EXD, ENCFF419RSJ 358758 ENCODE Processing Pipeline 05dd138ace0c34c71916779bf20aef8d https://www.encodeproject.org/files/ENCFF674MDG/@@download/ENCFF674MDG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF532ZMV bam unfiltered alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF697STR, ENCFF766QOB, ENCFF807MUK 3593872994 ENCODE Processing Pipeline 02e34e6c280cdc8953ff3e33e6cbf780 https://www.encodeproject.org/files/ENCFF532ZMV/@@download/ENCFF532ZMV.bam hg19 released low read depth ENCFF538CSL bam unfiltered alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF374EZV, ENCFF807MUK, ENCFF887TWQ 3304442529 ENCODE Processing Pipeline bbb56665134b9fe9fc85ae3e03be5240 https://www.encodeproject.org/files/ENCFF538CSL/@@download/ENCFF538CSL.bam hg19 released low read depth ENCFF887TWQ fastq reads ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF374EZV 1464508151 Michael Snyder, Stanford 1ea14147f96fdab2e6614a64452d19c0 SRA:SRR5111132 https://www.encodeproject.org/files/ENCFF887TWQ/@@download/ENCFF887TWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF697STR fastq reads ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF766QOB 1632011071 Michael Snyder, Stanford a847ce904c322894c5baeedda0b5144c SRA:SRR5111131 https://www.encodeproject.org/files/ENCFF697STR/@@download/ENCFF697STR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF766QOB fastq reads ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF697STR 1626977381 Michael Snyder, Stanford 01c2562d976dea65e8adaed002deb397 SRA:SRR5111131 https://www.encodeproject.org/files/ENCFF766QOB/@@download/ENCFF766QOB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF374EZV fastq reads ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF887TWQ 1509157592 Michael Snyder, Stanford f4136ea8108af7fd46d80acf665be8a4 SRA:SRR5111132 https://www.encodeproject.org/files/ENCFF374EZV/@@download/ENCFF374EZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF568FRV bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF697STR, ENCFF766QOB, ENCFF807MUK 2905773575 ENCODE Processing Pipeline 297f4dae172fc5a619d35fa713777ce2 https://www.encodeproject.org/files/ENCFF568FRV/@@download/ENCFF568FRV.bam hg19 released low read depth ENCFF333NCC bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF374EZV, ENCFF807MUK, ENCFF887TWQ 2802016440 ENCODE Processing Pipeline 7c447ea4db24663dfc7cf2fb5d48107c https://www.encodeproject.org/files/ENCFF333NCC/@@download/ENCFF333NCC.bam hg19 released low read depth ENCFF336JJI bigWig signal p-value ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF568FRV, ENCFF581ZJL 1000081353 ENCODE Processing Pipeline ab32b5b70ef6e75e6a89f2a611582e1b https://www.encodeproject.org/files/ENCFF336JJI/@@download/ENCFF336JJI.bigWig hg19 released low read depth ENCFF917BYM bigWig signal p-value ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF333NCC 867527742 ENCODE Processing Pipeline 8e541a4c52909517a6abe2e91d738a79 https://www.encodeproject.org/files/ENCFF917BYM/@@download/ENCFF917BYM.bigWig hg19 released low read depth ENCFF060ICO bigWig signal p-value ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF333NCC, ENCFF568FRV, ENCFF581ZJL 1613148476 ENCODE Processing Pipeline 1683f4d51a5bba8bdf4bfded3ba83567 https://www.encodeproject.org/files/ENCFF060ICO/@@download/ENCFF060ICO.bigWig hg19 released low read depth ENCFF426LYI bigWig fold change over control ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF568FRV, ENCFF581ZJL 905355606 ENCODE Processing Pipeline 414cca2594a431ce114e41e793738af1 https://www.encodeproject.org/files/ENCFF426LYI/@@download/ENCFF426LYI.bigWig hg19 released low read depth ENCFF842KMB bigWig fold change over control ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF333NCC 881049267 ENCODE Processing Pipeline f5dd8a32bdb510e390934fd68493eda0 https://www.encodeproject.org/files/ENCFF842KMB/@@download/ENCFF842KMB.bigWig hg19 released low read depth ENCFF749MZJ bigWig fold change over control ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF333NCC, ENCFF568FRV, ENCFF581ZJL 1786543276 ENCODE Processing Pipeline ad5ceecbebc2f7832b51636a603ccb73 https://www.encodeproject.org/files/ENCFF749MZJ/@@download/ENCFF749MZJ.bigWig hg19 released low read depth ENCFF329FRY bigBed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF501DZY 13396964 ENCODE Processing Pipeline 55f2a14a34be309556a327b90d86fe50 https://www.encodeproject.org/files/ENCFF329FRY/@@download/ENCFF329FRY.bigBed hg19 released low read depth ENCFF094YIY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF333NCC 6297379 ENCODE Processing Pipeline 642dae0844a0e8d8dd075f82b553215f https://www.encodeproject.org/files/ENCFF094YIY/@@download/ENCFF094YIY.bed.gz hg19 released low read depth ENCFF501DZY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF568FRV, ENCFF581ZJL 6216671 ENCODE Processing Pipeline 930752e7e889e06e0e3a436fa59bb5ef https://www.encodeproject.org/files/ENCFF501DZY/@@download/ENCFF501DZY.bed.gz hg19 released low read depth ENCFF648SNQ bigBed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF094YIY 13362123 ENCODE Processing Pipeline 1838c35e1391ee011dc3b2700477dcc8 https://www.encodeproject.org/files/ENCFF648SNQ/@@download/ENCFF648SNQ.bigBed hg19 released low read depth ENCFF186VAU bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF333NCC, ENCFF568FRV, ENCFF581ZJL 7097726 ENCODE Processing Pipeline d7c9ad3f216460e2d0dd721db5ec966e https://www.encodeproject.org/files/ENCFF186VAU/@@download/ENCFF186VAU.bed.gz hg19 released low read depth ENCFF316TDH bigBed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF186VAU 13332392 ENCODE Processing Pipeline 19a17b2e682ae5218d16211789d60702 https://www.encodeproject.org/files/ENCFF316TDH/@@download/ENCFF316TDH.bigBed hg19 released low read depth ENCFF158BEJ bam unfiltered alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF374EZV, ENCFF643CGH, ENCFF887TWQ 3307702605 ENCODE Processing Pipeline d11ea33f4d9019cc161861fbb938535a https://www.encodeproject.org/files/ENCFF158BEJ/@@download/ENCFF158BEJ.bam GRCh38 released low read depth ENCFF509PAP bam unfiltered alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF697STR, ENCFF766QOB 3596801382 ENCODE Processing Pipeline f1c926b0c7b288e3beb72465453bc8e2 https://www.encodeproject.org/files/ENCFF509PAP/@@download/ENCFF509PAP.bam GRCh38 released low read depth ENCFF254IUH bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF697STR, ENCFF766QOB 2907338780 ENCODE Processing Pipeline 743060d1a4e279740492b634f01be06d https://www.encodeproject.org/files/ENCFF254IUH/@@download/ENCFF254IUH.bam GRCh38 released low read depth ENCFF167NVK bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF374EZV, ENCFF643CGH, ENCFF887TWQ 2804124820 ENCODE Processing Pipeline eacdcd40493b32e31a9f978a19de2178 https://www.encodeproject.org/files/ENCFF167NVK/@@download/ENCFF167NVK.bam GRCh38 released low read depth ENCFF085ZWO bigWig signal p-value ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF254IUH, ENCFF910IKB 927422434 ENCODE Processing Pipeline c10f0fd96290e52059c4821d798f194b https://www.encodeproject.org/files/ENCFF085ZWO/@@download/ENCFF085ZWO.bigWig GRCh38 released low read depth ENCFF157QPI bigWig signal p-value ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF167NVK, ENCFF227IZS 889081880 ENCODE Processing Pipeline 7f7b89e41eb7cbc75dd8d900f0555c1f https://www.encodeproject.org/files/ENCFF157QPI/@@download/ENCFF157QPI.bigWig GRCh38 released low read depth ENCFF175ESC bigWig signal p-value ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF167NVK, ENCFF227IZS, ENCFF254IUH, ENCFF910IKB 1818903033 ENCODE Processing Pipeline 90293a09dbf7f47dd59e2511a7efb620 https://www.encodeproject.org/files/ENCFF175ESC/@@download/ENCFF175ESC.bigWig GRCh38 released low read depth ENCFF220ANT bigWig fold change over control ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF254IUH, ENCFF910IKB 915138037 ENCODE Processing Pipeline 231097a76931246ee6ff8fd0ae9ecd9a https://www.encodeproject.org/files/ENCFF220ANT/@@download/ENCFF220ANT.bigWig GRCh38 released low read depth ENCFF539UWO bigWig fold change over control ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF167NVK, ENCFF227IZS 882508802 ENCODE Processing Pipeline 68666a13db52d7193b80e084eebcb31a https://www.encodeproject.org/files/ENCFF539UWO/@@download/ENCFF539UWO.bigWig GRCh38 released low read depth ENCFF113RTQ bigWig fold change over control ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF167NVK, ENCFF227IZS, ENCFF254IUH, ENCFF910IKB 1781016960 ENCODE Processing Pipeline b149deeac849d6c2e075c6e1c1ca9a4b https://www.encodeproject.org/files/ENCFF113RTQ/@@download/ENCFF113RTQ.bigWig GRCh38 released low read depth ENCFF817DXM bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF254IUH, ENCFF910IKB 6097340 ENCODE Processing Pipeline 91c110f53c2a075d1f90a5e9f3caa392 https://www.encodeproject.org/files/ENCFF817DXM/@@download/ENCFF817DXM.bed.gz GRCh38 released low read depth ENCFF136BJU bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF167NVK, ENCFF227IZS 6171534 ENCODE Processing Pipeline c52340bfe4754d2535b7a9213ffc54f5 https://www.encodeproject.org/files/ENCFF136BJU/@@download/ENCFF136BJU.bed.gz GRCh38 released low read depth ENCFF418PEX bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF167NVK, ENCFF227IZS, ENCFF254IUH, ENCFF910IKB 7069186 ENCODE Processing Pipeline 51d63d06686f5205a3d744be3053fdc2 https://www.encodeproject.org/files/ENCFF418PEX/@@download/ENCFF418PEX.bed.gz GRCh38 released low read depth ENCFF134HLI bigBed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF817DXM 13386457 ENCODE Processing Pipeline da5186e4a3984e7d4c8da73e25e4ec6a https://www.encodeproject.org/files/ENCFF134HLI/@@download/ENCFF134HLI.bigBed GRCh38 released low read depth ENCFF929ZLA bigBed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF136BJU 13375679 ENCODE Processing Pipeline 815793f2a99684c6c6f0cc78dfd56586 https://www.encodeproject.org/files/ENCFF929ZLA/@@download/ENCFF929ZLA.bigBed GRCh38 released low read depth ENCFF453AGZ bigBed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF418PEX 13364338 ENCODE Processing Pipeline b8974d7c5b67ca61c454064996377fa9 https://www.encodeproject.org/files/ENCFF453AGZ/@@download/ENCFF453AGZ.bigBed GRCh38 released low read depth ENCFF683KZE bigBed narrowPeak conservative idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF299JOC 523731 ENCODE Processing Pipeline b5f0c000cad8f4ec649ee16c5558171a https://www.encodeproject.org/files/ENCFF683KZE/@@download/ENCFF683KZE.bigBed GRCh38 released low read depth ENCFF299JOC bed narrowPeak conservative idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF136BJU, ENCFF418PEX, ENCFF419RSJ, ENCFF817DXM 254119 ENCODE Processing Pipeline 92589e53ff60a66e990c49240bfe374b https://www.encodeproject.org/files/ENCFF299JOC/@@download/ENCFF299JOC.bed.gz GRCh38 released low read depth ENCFF713ZVD bed narrowPeak optimal idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF136BJU, ENCFF418PEX, ENCFF419RSJ, ENCFF817DXM 311438 ENCODE Processing Pipeline 7d5c422e2e0fbd38738e7f2e5ba6653d https://www.encodeproject.org/files/ENCFF713ZVD/@@download/ENCFF713ZVD.bed.gz GRCh38 released low read depth ENCFF094QEC bigBed narrowPeak optimal idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF713ZVD 602137 ENCODE Processing Pipeline 9b96c8ed90ad35760299a293300cf4ce https://www.encodeproject.org/files/ENCFF094QEC/@@download/ENCFF094QEC.bigBed GRCh38 released low read depth ENCFF552FHP bigBed narrowPeak conservative idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF752DRC 468624 ENCODE Processing Pipeline aae88fc54cadc7c2dd75771f42bbac3b https://www.encodeproject.org/files/ENCFF552FHP/@@download/ENCFF552FHP.bigBed hg19 released low read depth ENCFF752DRC bed narrowPeak conservative idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF094YIY, ENCFF186VAU, ENCFF501DZY 216437 ENCODE Processing Pipeline d34a115aeb98915ee5cbc17d740e2677 https://www.encodeproject.org/files/ENCFF752DRC/@@download/ENCFF752DRC.bed.gz hg19 released low read depth ENCFF410EDG bed narrowPeak optimal idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF094YIY, ENCFF186VAU, ENCFF501DZY 259215 ENCODE Processing Pipeline dcb6e6f91e09c643f12408b087773474 https://www.encodeproject.org/files/ENCFF410EDG/@@download/ENCFF410EDG.bed.gz hg19 released low read depth ENCFF436REM bigBed narrowPeak optimal idr thresholded peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF410EDG 524630 ENCODE Processing Pipeline 1471211ef3617d7e336559aae3630e29 https://www.encodeproject.org/files/ENCFF436REM/@@download/ENCFF436REM.bigBed hg19 released low read depth ENCFF844CHO fastq reads ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF422HJD 3476871339 Michael Snyder, Stanford 2176d55bbc03f44ce89eec5073c2f139 SRA:SRR6212835 https://www.encodeproject.org/files/ENCFF844CHO/@@download/ENCFF844CHO.fastq.gz Illumina HiSeq 4000 /files/ENCFF723TPE/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF422HJD fastq reads ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF844CHO 3561540861 Michael Snyder, Stanford 705b8d7ea8deda2c7618c4e31b38224c SRA:SRR6212835 https://www.encodeproject.org/files/ENCFF422HJD/@@download/ENCFF422HJD.fastq.gz Illumina HiSeq 4000 /files/ENCFF896VYC/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF805JYZ bam unfiltered alignments ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF422HJD, ENCFF643CGH, ENCFF844CHO 6469425636 ENCODE Processing Pipeline 1de51be054b3616ff83660f62809d0ce https://www.encodeproject.org/files/ENCFF805JYZ/@@download/ENCFF805JYZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF077VRB bam unfiltered alignments ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF422HJD, ENCFF807MUK, ENCFF844CHO 6467336629 ENCODE Processing Pipeline fa9d0559f9a7d554e50f0e2e722f3354 https://www.encodeproject.org/files/ENCFF077VRB/@@download/ENCFF077VRB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF548GPB bam alignments ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF422HJD, ENCFF643CGH, ENCFF844CHO 3911872816 ENCODE Processing Pipeline 4afaa1fb299f71cbcc32220c317eb393 https://www.encodeproject.org/files/ENCFF548GPB/@@download/ENCFF548GPB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF051HDO bam alignments ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF422HJD, ENCFF807MUK, ENCFF844CHO 3907081921 ENCODE Processing Pipeline 9a9de95d5435234c2d815ac3f4f83326 https://www.encodeproject.org/files/ENCFF051HDO/@@download/ENCFF051HDO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF620DNX bed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF051HDO, ENCFF908GSJ 6836392 ENCODE Processing Pipeline 8da83cc93e5aa7b42fc58f8a6577596a https://www.encodeproject.org/files/ENCFF620DNX/@@download/ENCFF620DNX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF523JVX bigBed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF620DNX 13551259 ENCODE Processing Pipeline 489f7c0f38da51d7eb0640065891b5f5 https://www.encodeproject.org/files/ENCFF523JVX/@@download/ENCFF523JVX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF283PHB bigWig signal p-value ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF051HDO, ENCFF908GSJ 1034269314 ENCODE Processing Pipeline d3b725c068dde4b4d0c08396e5d811ff https://www.encodeproject.org/files/ENCFF283PHB/@@download/ENCFF283PHB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF395FCN bigWig fold change over control ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF051HDO, ENCFF908GSJ 1330749474 ENCODE Processing Pipeline cbae4cd8028068d9add3d67178b80bf5 https://www.encodeproject.org/files/ENCFF395FCN/@@download/ENCFF395FCN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF547PLX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF620DNX 743529 ENCODE Processing Pipeline 9be895fc655a4677eb0774b455ac6453 https://www.encodeproject.org/files/ENCFF547PLX/@@download/ENCFF547PLX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF850GCY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF547PLX 1529405 ENCODE Processing Pipeline 717a58ecfda6ee5c3bb478276af4d1dc https://www.encodeproject.org/files/ENCFF850GCY/@@download/ENCFF850GCY.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF653KIU bigWig fold change over control ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF548GPB, ENCFF602FBL 1333526165 ENCODE Processing Pipeline d07a91c9efb5d84c7f7d166206e2a88b https://www.encodeproject.org/files/ENCFF653KIU/@@download/ENCFF653KIU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF991PTL bigBed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF554DUQ 13595130 ENCODE Processing Pipeline a09f653565e7f4d24bdb24e6052f472d https://www.encodeproject.org/files/ENCFF991PTL/@@download/ENCFF991PTL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF693TBO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF554DUQ 752636 ENCODE Processing Pipeline 785853b1da7f2711bc2955eac040a1f9 https://www.encodeproject.org/files/ENCFF693TBO/@@download/ENCFF693TBO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF753AMV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF693TBO 1545911 ENCODE Processing Pipeline f823fa14a67da0be0b4c248cb1465b76 https://www.encodeproject.org/files/ENCFF753AMV/@@download/ENCFF753AMV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF554DUQ bed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF548GPB, ENCFF602FBL 6865342 ENCODE Processing Pipeline 01ff45d5e90073c657638db7547b1050 https://www.encodeproject.org/files/ENCFF554DUQ/@@download/ENCFF554DUQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF875AHC bigWig signal p-value ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF548GPB, ENCFF602FBL 1095667588 ENCODE Processing Pipeline c5b70deb6dabb232b25641e3b8ac7dee https://www.encodeproject.org/files/ENCFF875AHC/@@download/ENCFF875AHC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF566VEY bam unfiltered alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 100 ENCFF501RUA, ENCFF721WRK, ENCFF807MUK 7542511696 ENCODE Processing Pipeline 2040dbfac7dd33ae7b1d7fe8d188dc21 https://www.encodeproject.org/files/ENCFF566VEY/@@download/ENCFF566VEY.bam hg19 released ENCFF598LRF bam unfiltered alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 100 ENCFF567PIT, ENCFF568RGZ, ENCFF807MUK 6552589560 ENCODE Processing Pipeline 8e5bc988bd56d1dd969fa975a5d4b2ff https://www.encodeproject.org/files/ENCFF598LRF/@@download/ENCFF598LRF.bam hg19 released ENCFF568RGZ fastq reads ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF567PIT 3009794003 Michael Snyder, Stanford 66be1c461800ec1ada0b48971b6aabd4 SRA:SRR5112354 https://www.encodeproject.org/files/ENCFF568RGZ/@@download/ENCFF568RGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF721WRK fastq reads ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF501RUA 3489761444 Michael Snyder, Stanford e5cc83638f0ac44287c70c6240be75a8 SRA:SRR5112355 https://www.encodeproject.org/files/ENCFF721WRK/@@download/ENCFF721WRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF501RUA fastq reads ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF721WRK 3547511726 Michael Snyder, Stanford 41e72f6f9dc89eb3c322659b52910415 SRA:SRR5112355 https://www.encodeproject.org/files/ENCFF501RUA/@@download/ENCFF501RUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF567PIT fastq reads ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF568RGZ 3048737428 Michael Snyder, Stanford 629b95e354965588673062c4fdb01a9e SRA:SRR5112354 https://www.encodeproject.org/files/ENCFF567PIT/@@download/ENCFF567PIT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF621JTB bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 100 ENCFF501RUA, ENCFF721WRK, ENCFF807MUK 6514679259 ENCODE Processing Pipeline bb47ad417d035d554b9ba1c5e7fb003d https://www.encodeproject.org/files/ENCFF621JTB/@@download/ENCFF621JTB.bam hg19 released ENCFF508SEX bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 100 ENCFF567PIT, ENCFF568RGZ, ENCFF807MUK 5634227522 ENCODE Processing Pipeline 3ac416fe01d0765726196b55a99a457c https://www.encodeproject.org/files/ENCFF508SEX/@@download/ENCFF508SEX.bam hg19 released ENCFF602HHC bigWig signal p-value ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF508SEX, ENCFF581ZJL 1377277478 ENCODE Processing Pipeline ace0eb498d5b3ccf7b140fe95596846b https://www.encodeproject.org/files/ENCFF602HHC/@@download/ENCFF602HHC.bigWig hg19 released ENCFF573VHS bigWig signal p-value ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF621JTB 1928165008 ENCODE Processing Pipeline 5a7a14f6a665e35734b73fc43e31d2de https://www.encodeproject.org/files/ENCFF573VHS/@@download/ENCFF573VHS.bigWig hg19 released ENCFF050OCX bigWig signal p-value ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF508SEX, ENCFF581ZJL, ENCFF621JTB 1966070385 ENCODE Processing Pipeline ba15c86bb9316a6b09a395b5cea2af34 https://www.encodeproject.org/files/ENCFF050OCX/@@download/ENCFF050OCX.bigWig hg19 released ENCFF608TZE bigWig fold change over control ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF508SEX, ENCFF581ZJL 1345395851 ENCODE Processing Pipeline c75a5d5f4ba33fe80a9f5460caa94913 https://www.encodeproject.org/files/ENCFF608TZE/@@download/ENCFF608TZE.bigWig hg19 released ENCFF776KNN bigWig fold change over control ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF621JTB 1893112148 ENCODE Processing Pipeline c43166a171731d5311f7991ade482f08 https://www.encodeproject.org/files/ENCFF776KNN/@@download/ENCFF776KNN.bigWig hg19 released ENCFF332WPW bigWig fold change over control ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF508SEX, ENCFF581ZJL, ENCFF621JTB 2432054798 ENCODE Processing Pipeline 27e0d67bec6d4ac913388cae5e6a4be6 https://www.encodeproject.org/files/ENCFF332WPW/@@download/ENCFF332WPW.bigWig hg19 released ENCFF208YXN bigBed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF260MCD 11023087 ENCODE Processing Pipeline 1e1c55ea642b34da53c9a62d2576ad65 https://www.encodeproject.org/files/ENCFF208YXN/@@download/ENCFF208YXN.bigBed hg19 released ENCFF260MCD bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF508SEX, ENCFF581ZJL 6644738 ENCODE Processing Pipeline 38fc5094fedb938a0cd694b3d2ffd88e https://www.encodeproject.org/files/ENCFF260MCD/@@download/ENCFF260MCD.bed.gz hg19 released ENCFF262RPX bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF621JTB 7072773 ENCODE Processing Pipeline ed8b89f25a858edca351d442df02f59a https://www.encodeproject.org/files/ENCFF262RPX/@@download/ENCFF262RPX.bed.gz hg19 released ENCFF530ETK bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF508SEX, ENCFF581ZJL, ENCFF621JTB 7233376 ENCODE Processing Pipeline 200d67b2045a04d5547c856cde94ac0b https://www.encodeproject.org/files/ENCFF530ETK/@@download/ENCFF530ETK.bed.gz hg19 released ENCFF824BFL bigBed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF262RPX 10943590 ENCODE Processing Pipeline 5be690b67e1b66eb461f79d74a5c3a02 https://www.encodeproject.org/files/ENCFF824BFL/@@download/ENCFF824BFL.bigBed hg19 released ENCFF967ENR bigBed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF530ETK 13042427 ENCODE Processing Pipeline 505313246c05d1ae2293745f2985b199 https://www.encodeproject.org/files/ENCFF967ENR/@@download/ENCFF967ENR.bigBed hg19 released ENCFF605QGJ bed narrowPeak conservative idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF260MCD, ENCFF262RPX, ENCFF530ETK 33226 ENCODE Processing Pipeline 442aefc6145383ced59d427b142cd044 https://www.encodeproject.org/files/ENCFF605QGJ/@@download/ENCFF605QGJ.bed.gz hg19 released ENCFF394PVD bigBed narrowPeak conservative idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF605QGJ 121008 ENCODE Processing Pipeline 55e1bf97cf4fc02e50bb02ce081d3da0 https://www.encodeproject.org/files/ENCFF394PVD/@@download/ENCFF394PVD.bigBed hg19 released ENCFF895DKT bigBed narrowPeak optimal idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF679ITJ 156649 ENCODE Processing Pipeline 4cce95777ac263136867f761824cf4d6 https://www.encodeproject.org/files/ENCFF895DKT/@@download/ENCFF895DKT.bigBed hg19 released ENCFF679ITJ bed narrowPeak optimal idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF260MCD, ENCFF262RPX, ENCFF530ETK 53864 ENCODE Processing Pipeline 4809a1434ba955b7c1164f4b9f572b67 https://www.encodeproject.org/files/ENCFF679ITJ/@@download/ENCFF679ITJ.bed.gz hg19 released ENCFF642KOW bam unfiltered alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 100 ENCFF567PIT, ENCFF568RGZ, ENCFF643CGH 6561797504 ENCODE Processing Pipeline d6676688b07740b05238deb0b95ce80f https://www.encodeproject.org/files/ENCFF642KOW/@@download/ENCFF642KOW.bam GRCh38 released ENCFF961BZW bam unfiltered alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 100 ENCFF501RUA, ENCFF643CGH, ENCFF721WRK 7552849077 ENCODE Processing Pipeline cd50aa8aa23a322f879af9e5f8da8df3 https://www.encodeproject.org/files/ENCFF961BZW/@@download/ENCFF961BZW.bam GRCh38 released ENCFF668FCG bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 100 ENCFF567PIT, ENCFF568RGZ, ENCFF643CGH 5638457482 ENCODE Processing Pipeline 21f9edceb8e77e091293ec350ba32a02 https://www.encodeproject.org/files/ENCFF668FCG/@@download/ENCFF668FCG.bam GRCh38 released ENCFF145NON bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 100 ENCFF501RUA, ENCFF643CGH, ENCFF721WRK 6519958105 ENCODE Processing Pipeline a7ca88f7c13cf4edde97dbf91ca22e69 https://www.encodeproject.org/files/ENCFF145NON/@@download/ENCFF145NON.bam GRCh38 released ENCFF631UKM bigWig signal p-value ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF668FCG, ENCFF910IKB 1293935796 ENCODE Processing Pipeline 7b2a034b4d0482fb2a8e8c8c4d8c6af0 https://www.encodeproject.org/files/ENCFF631UKM/@@download/ENCFF631UKM.bigWig GRCh38 released ENCFF256GKD bigWig signal p-value ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF145NON, ENCFF227IZS, ENCFF910IKB 1659091883 ENCODE Processing Pipeline 75bb83beae1f0ee92cb6cdd8cebae318 https://www.encodeproject.org/files/ENCFF256GKD/@@download/ENCFF256GKD.bigWig GRCh38 released ENCFF367WKR bigWig signal p-value ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF145NON, ENCFF227IZS, ENCFF668FCG, ENCFF910IKB 2126016569 ENCODE Processing Pipeline ec37c6fd916519733e7ac07f03d0ed95 https://www.encodeproject.org/files/ENCFF367WKR/@@download/ENCFF367WKR.bigWig GRCh38 released ENCFF784PNF bigWig fold change over control ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF668FCG, ENCFF910IKB 1354163764 ENCODE Processing Pipeline 328fff08a385cddb6bbf9c9c351b9486 https://www.encodeproject.org/files/ENCFF784PNF/@@download/ENCFF784PNF.bigWig GRCh38 released ENCFF362LEI bigWig fold change over control ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF145NON, ENCFF227IZS, ENCFF910IKB 1911099147 ENCODE Processing Pipeline 422cf9a8f103b6421558190bda4ecddf https://www.encodeproject.org/files/ENCFF362LEI/@@download/ENCFF362LEI.bigWig GRCh38 released ENCFF419BHQ bigWig fold change over control ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF145NON, ENCFF227IZS, ENCFF668FCG, ENCFF910IKB 2451685638 ENCODE Processing Pipeline f6ebd080380606b5d9e2b20be5824846 https://www.encodeproject.org/files/ENCFF419BHQ/@@download/ENCFF419BHQ.bigWig GRCh38 released ENCFF209WCI bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF668FCG, ENCFF910IKB 6502942 ENCODE Processing Pipeline ef14b3ef0c28e0e8c859f6514c67555f https://www.encodeproject.org/files/ENCFF209WCI/@@download/ENCFF209WCI.bed.gz GRCh38 released ENCFF007DSK bigBed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF209WCI 11036534 ENCODE Processing Pipeline 102ae7c05def047068c3bac194811cc2 https://www.encodeproject.org/files/ENCFF007DSK/@@download/ENCFF007DSK.bigBed GRCh38 released ENCFF487PEJ bigBed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF799RSQ 10956940 ENCODE Processing Pipeline 6816d99117bc0a209c781b19dff75e85 https://www.encodeproject.org/files/ENCFF487PEJ/@@download/ENCFF487PEJ.bigBed GRCh38 released ENCFF799RSQ bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF145NON, ENCFF227IZS, ENCFF910IKB 7010408 ENCODE Processing Pipeline 9439994cd87a99d3dc7df0f035af8883 https://www.encodeproject.org/files/ENCFF799RSQ/@@download/ENCFF799RSQ.bed.gz GRCh38 released ENCFF483MZB bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF145NON, ENCFF227IZS, ENCFF668FCG, ENCFF910IKB 7234067 ENCODE Processing Pipeline ddec7b234e581e12173910bd3fb5d9f8 https://www.encodeproject.org/files/ENCFF483MZB/@@download/ENCFF483MZB.bed.gz GRCh38 released ENCFF122GOC bed narrowPeak conservative idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF209WCI, ENCFF419RSJ, ENCFF483MZB, ENCFF799RSQ 30438 ENCODE Processing Pipeline 9bc7be50679ae4d8c6eb6c09da1b758d https://www.encodeproject.org/files/ENCFF122GOC/@@download/ENCFF122GOC.bed.gz GRCh38 released ENCFF922PVI bigBed narrowPeak conservative idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF122GOC 120678 ENCODE Processing Pipeline 6547e1467c06626f45193b67df432243 https://www.encodeproject.org/files/ENCFF922PVI/@@download/ENCFF922PVI.bigBed GRCh38 released ENCFF672PYP bed narrowPeak optimal idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF209WCI, ENCFF419RSJ, ENCFF483MZB, ENCFF799RSQ 51856 ENCODE Processing Pipeline 6c8a3fa3bb9dcefb3bb5f8c48cd57489 https://www.encodeproject.org/files/ENCFF672PYP/@@download/ENCFF672PYP.bed.gz GRCh38 released ENCFF040QJR bigBed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF483MZB 10910236 ENCODE Processing Pipeline 421c75e102be1ceb484659d25d726432 https://www.encodeproject.org/files/ENCFF040QJR/@@download/ENCFF040QJR.bigBed GRCh38 released ENCFF509ARI bigBed narrowPeak optimal idr thresholded peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF672PYP 158136 ENCODE Processing Pipeline 0f64b7f726a70b2f64ab238c8704b5a2 https://www.encodeproject.org/files/ENCFF509ARI/@@download/ENCFF509ARI.bigBed GRCh38 released ENCFF653BVZ bam unfiltered alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 100 ENCFF189UUN, ENCFF332XKO, ENCFF807MUK 4553701541 ENCODE Processing Pipeline 2c52995557b0e060c93be678e28ca354 https://www.encodeproject.org/files/ENCFF653BVZ/@@download/ENCFF653BVZ.bam hg19 released low read depth ENCFF237QMV bam unfiltered alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 100 ENCFF094FKH, ENCFF807MUK, ENCFF968SHS 3743465486 ENCODE Processing Pipeline 215c466fd6df04a03c6590e51634502f https://www.encodeproject.org/files/ENCFF237QMV/@@download/ENCFF237QMV.bam hg19 released low read depth ENCFF094FKH fastq reads ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 1 100 paired-ended 1 ENCFF968SHS 1655034233 Michael Snyder, Stanford 04e98aead0ab1f887f6bff89caeec55f SRA:SRR5112202 https://www.encodeproject.org/files/ENCFF094FKH/@@download/ENCFF094FKH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF968SHS fastq reads ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 1 100 paired-ended 2 ENCFF094FKH 1720416778 Michael Snyder, Stanford 09b51cf6b4a004b2d915454ebbf2e4b7 SRA:SRR5112202 https://www.encodeproject.org/files/ENCFF968SHS/@@download/ENCFF968SHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF332XKO fastq reads ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 1 100 paired-ended 1 ENCFF189UUN 2126850994 Michael Snyder, Stanford eb996cff637b109c765b916db17977b3 SRA:SRR5112201 https://www.encodeproject.org/files/ENCFF332XKO/@@download/ENCFF332XKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF189UUN fastq reads ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 1 100 paired-ended 2 ENCFF332XKO 2058799488 Michael Snyder, Stanford a5f61bbcd15afcffdbd477a7ed9313fd SRA:SRR5112201 https://www.encodeproject.org/files/ENCFF189UUN/@@download/ENCFF189UUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF397XVJ bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 100 ENCFF189UUN, ENCFF332XKO, ENCFF807MUK 3741355948 ENCODE Processing Pipeline dbc3dfb7c06fbadc3cd193ca4dde3cf8 https://www.encodeproject.org/files/ENCFF397XVJ/@@download/ENCFF397XVJ.bam hg19 released low read depth ENCFF675GYP bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 100 ENCFF094FKH, ENCFF807MUK, ENCFF968SHS 3096534358 ENCODE Processing Pipeline dc8cc650e3fb1c9e853c2d8dad3cb2ed https://www.encodeproject.org/files/ENCFF675GYP/@@download/ENCFF675GYP.bam hg19 released low read depth ENCFF863HQX bigWig signal p-value ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF397XVJ, ENCFF581ZJL 949417509 ENCODE Processing Pipeline 598addffd1162fd62abd16640bc5668e https://www.encodeproject.org/files/ENCFF863HQX/@@download/ENCFF863HQX.bigWig hg19 released low read depth ENCFF895YED bigWig signal p-value ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF051LWI, ENCFF675GYP 931792802 ENCODE Processing Pipeline 013e64c894afcdf73eb671a39c837044 https://www.encodeproject.org/files/ENCFF895YED/@@download/ENCFF895YED.bigWig hg19 released low read depth ENCFF604RBK bigWig signal p-value ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF051LWI, ENCFF397XVJ, ENCFF581ZJL, ENCFF675GYP 1854512096 ENCODE Processing Pipeline 4a445421a57963bb50492fbcc0d5b537 https://www.encodeproject.org/files/ENCFF604RBK/@@download/ENCFF604RBK.bigWig hg19 released low read depth ENCFF833GNS bigWig fold change over control ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF051LWI, ENCFF675GYP 961347684 ENCODE Processing Pipeline 1ac2cf4df6e51d4f1257b452957168a6 https://www.encodeproject.org/files/ENCFF833GNS/@@download/ENCFF833GNS.bigWig hg19 released low read depth ENCFF141KVC bigWig fold change over control ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF397XVJ, ENCFF581ZJL 1083427464 ENCODE Processing Pipeline c75e5cb1a772ba80ca4759e657266453 https://www.encodeproject.org/files/ENCFF141KVC/@@download/ENCFF141KVC.bigWig hg19 released low read depth ENCFF563KAU bigWig fold change over control ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF051LWI, ENCFF397XVJ, ENCFF581ZJL, ENCFF675GYP 1915270228 ENCODE Processing Pipeline 19f03d0197ebed789fe9c5a38918fd75 https://www.encodeproject.org/files/ENCFF563KAU/@@download/ENCFF563KAU.bigWig hg19 released low read depth ENCFF778NFD bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF051LWI, ENCFF675GYP 7067095 ENCODE Processing Pipeline 3555732e90f0ff054715edfa7fa639e3 https://www.encodeproject.org/files/ENCFF778NFD/@@download/ENCFF778NFD.bed.gz hg19 released low read depth ENCFF984OJS bigBed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF388RWJ 12873354 ENCODE Processing Pipeline 6fa4fe92ef362aec83b9705180301d85 https://www.encodeproject.org/files/ENCFF984OJS/@@download/ENCFF984OJS.bigBed hg19 released low read depth ENCFF388RWJ bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF397XVJ, ENCFF581ZJL 7022368 ENCODE Processing Pipeline c5f090b4652004481eb89024056e4c29 https://www.encodeproject.org/files/ENCFF388RWJ/@@download/ENCFF388RWJ.bed.gz hg19 released low read depth ENCFF108BVL bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF051LWI, ENCFF397XVJ, ENCFF581ZJL, ENCFF675GYP 7278648 ENCODE Processing Pipeline 2e985497367799e3ea0d43b1ad7cb110 https://www.encodeproject.org/files/ENCFF108BVL/@@download/ENCFF108BVL.bed.gz hg19 released low read depth ENCFF987MLB bigBed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF778NFD 12856947 ENCODE Processing Pipeline 69a0d19751a1fcf4d76398081697ca53 https://www.encodeproject.org/files/ENCFF987MLB/@@download/ENCFF987MLB.bigBed hg19 released low read depth ENCFF853CEX bigBed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF108BVL 12947594 ENCODE Processing Pipeline 81e2d91f6f0487076b037d3770067fc2 https://www.encodeproject.org/files/ENCFF853CEX/@@download/ENCFF853CEX.bigBed hg19 released low read depth ENCFF073OVL bam unfiltered alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 100 ENCFF094FKH, ENCFF643CGH, ENCFF968SHS 3746071100 ENCODE Processing Pipeline 02250fc5261a1b9889fdc96f2252bf35 https://www.encodeproject.org/files/ENCFF073OVL/@@download/ENCFF073OVL.bam GRCh38 released low read depth ENCFF775SSR bam unfiltered alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 100 ENCFF189UUN, ENCFF332XKO, ENCFF643CGH 4557087515 ENCODE Processing Pipeline 4c13efcbfead6c65e8b52f6e0d956c46 https://www.encodeproject.org/files/ENCFF775SSR/@@download/ENCFF775SSR.bam GRCh38 released low read depth ENCFF632WSK bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 100 ENCFF094FKH, ENCFF643CGH, ENCFF968SHS 3097794878 ENCODE Processing Pipeline bb404bccfca41bcdfe1c3f46b4003893 https://www.encodeproject.org/files/ENCFF632WSK/@@download/ENCFF632WSK.bam GRCh38 released low read depth ENCFF226IAA bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 100 ENCFF189UUN, ENCFF332XKO, ENCFF643CGH 3742608948 ENCODE Processing Pipeline b3ad9602bb8926b585b0fd984376295a https://www.encodeproject.org/files/ENCFF226IAA/@@download/ENCFF226IAA.bam GRCh38 released low read depth ENCFF430GWT bigWig signal p-value ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF226IAA, ENCFF910IKB 1020509694 ENCODE Processing Pipeline 2a6c9ea7b2410afcb90fcd31fee9073c https://www.encodeproject.org/files/ENCFF430GWT/@@download/ENCFF430GWT.bigWig GRCh38 released low read depth ENCFF150EDF bigWig signal p-value ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF227IZS, ENCFF632WSK 893642692 ENCODE Processing Pipeline f656c40fcedec9a8cf24708de2d7a1b1 https://www.encodeproject.org/files/ENCFF150EDF/@@download/ENCFF150EDF.bigWig GRCh38 released low read depth ENCFF963MJM bigWig signal p-value ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF226IAA, ENCFF227IZS, ENCFF632WSK, ENCFF910IKB 1830393401 ENCODE Processing Pipeline 8eed0150bc936a6ebbe29e0a9eddb7a9 https://www.encodeproject.org/files/ENCFF963MJM/@@download/ENCFF963MJM.bigWig GRCh38 released low read depth ENCFF338SJT bigWig fold change over control ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF226IAA, ENCFF910IKB 1085540990 ENCODE Processing Pipeline f5f0b5c7b852687281d265df72c76420 https://www.encodeproject.org/files/ENCFF338SJT/@@download/ENCFF338SJT.bigWig GRCh38 released low read depth ENCFF029WWS bigWig fold change over control ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF227IZS, ENCFF632WSK 961758595 ENCODE Processing Pipeline 514c9cda4cdd909666c41bdf7f494ce5 https://www.encodeproject.org/files/ENCFF029WWS/@@download/ENCFF029WWS.bigWig GRCh38 released low read depth ENCFF033QAN bigWig fold change over control ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF226IAA, ENCFF227IZS, ENCFF632WSK, ENCFF910IKB 1929506283 ENCODE Processing Pipeline 077d531c47d67666eda5abfdf69091e8 https://www.encodeproject.org/files/ENCFF033QAN/@@download/ENCFF033QAN.bigWig GRCh38 released low read depth ENCFF139UBB bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF226IAA, ENCFF910IKB 7005465 ENCODE Processing Pipeline 9afe7615d59c4041bc392986e28402d5 https://www.encodeproject.org/files/ENCFF139UBB/@@download/ENCFF139UBB.bed.gz GRCh38 released low read depth ENCFF930SRJ bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF227IZS, ENCFF632WSK 7022101 ENCODE Processing Pipeline 27898cff43da2d6384e20a271b264424 https://www.encodeproject.org/files/ENCFF930SRJ/@@download/ENCFF930SRJ.bed.gz GRCh38 released low read depth ENCFF673YDA bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF226IAA, ENCFF227IZS, ENCFF632WSK, ENCFF910IKB 7144801 ENCODE Processing Pipeline 0c2ac8d2fc662b8eba2083101a045794 https://www.encodeproject.org/files/ENCFF673YDA/@@download/ENCFF673YDA.bed.gz GRCh38 released low read depth ENCFF696KXL bigBed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 ENCFF139UBB 12912151 ENCODE Processing Pipeline a96c8fe1f66ff2ad4ed85166399f22e0 https://www.encodeproject.org/files/ENCFF696KXL/@@download/ENCFF696KXL.bigBed GRCh38 released low read depth ENCFF283CSH bigBed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 ENCFF930SRJ 12861561 ENCODE Processing Pipeline 6a8e29d744575a4014fb4f85df78f65f https://www.encodeproject.org/files/ENCFF283CSH/@@download/ENCFF283CSH.bigBed GRCh38 released low read depth ENCFF573SPH bigBed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF673YDA 12802331 ENCODE Processing Pipeline 1b3f3db71cdca9a49ba0fa681cd86b56 https://www.encodeproject.org/files/ENCFF573SPH/@@download/ENCFF573SPH.bigBed GRCh38 released low read depth ENCFF909FRB bed narrowPeak conservative idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF139UBB, ENCFF419RSJ, ENCFF673YDA, ENCFF930SRJ 874272 ENCODE Processing Pipeline f0ab1dadc53548c21013b56ae11d10e0 https://www.encodeproject.org/files/ENCFF909FRB/@@download/ENCFF909FRB.bed.gz GRCh38 released low read depth ENCFF511PMB bigBed narrowPeak conservative idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF909FRB 1524746 ENCODE Processing Pipeline 79ea2855a66764abefbd69be35adb217 https://www.encodeproject.org/files/ENCFF511PMB/@@download/ENCFF511PMB.bigBed GRCh38 released low read depth ENCFF556STK bed narrowPeak optimal idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF139UBB, ENCFF419RSJ, ENCFF673YDA, ENCFF930SRJ 1123859 ENCODE Processing Pipeline fbe90617a2d058c5b6c374a662588443 https://www.encodeproject.org/files/ENCFF556STK/@@download/ENCFF556STK.bed.gz GRCh38 released low read depth ENCFF474LWU bigBed narrowPeak optimal idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF556STK 2363956 ENCODE Processing Pipeline 92d154bb452ca86149bd9ddec3a23bc8 https://www.encodeproject.org/files/ENCFF474LWU/@@download/ENCFF474LWU.bigBed GRCh38 released low read depth ENCFF885VCM bigBed narrowPeak conservative idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF681IOP 1377770 ENCODE Processing Pipeline 5532e345bace13f1ec93347901bd0d26 https://www.encodeproject.org/files/ENCFF885VCM/@@download/ENCFF885VCM.bigBed hg19 released low read depth ENCFF151JTF bigBed narrowPeak optimal idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF408FQC 1653518 ENCODE Processing Pipeline 087aa3a58166ed6bc094caa8ad370fe5 https://www.encodeproject.org/files/ENCFF151JTF/@@download/ENCFF151JTF.bigBed hg19 released low read depth ENCFF681IOP bed narrowPeak conservative idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF001TDO, ENCFF108BVL, ENCFF388RWJ, ENCFF778NFD 759324 ENCODE Processing Pipeline faa326900a794100ddc74dd9fb3cc602 https://www.encodeproject.org/files/ENCFF681IOP/@@download/ENCFF681IOP.bed.gz hg19 released low read depth ENCFF408FQC bed narrowPeak optimal idr thresholded peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3, 4 ENCFF001TDO, ENCFF108BVL, ENCFF388RWJ, ENCFF778NFD 974557 ENCODE Processing Pipeline a9f515a615c9736874c5b02b3ef2f106 https://www.encodeproject.org/files/ENCFF408FQC/@@download/ENCFF408FQC.bed.gz hg19 released low read depth ENCFF169CRK fastq reads ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF367HUF 3742580635 Michael Snyder, Stanford 8e04ff86b79e7b126458d7ab5666551c https://www.encodeproject.org/files/ENCFF169CRK/@@download/ENCFF169CRK.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF457RYN fastq reads ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF126JWD 2988597444 Michael Snyder, Stanford b86090b4e75177f5ffc10ebbe4402877 https://www.encodeproject.org/files/ENCFF457RYN/@@download/ENCFF457RYN.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF126JWD fastq reads ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF457RYN 3153791741 Michael Snyder, Stanford 4a0f8ed1f360387eab04db889f1ec823 https://www.encodeproject.org/files/ENCFF126JWD/@@download/ENCFF126JWD.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF367HUF fastq reads ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF169CRK 3456593142 Michael Snyder, Stanford 1367bd682ec1fc6eea2a14610e404c39 https://www.encodeproject.org/files/ENCFF367HUF/@@download/ENCFF367HUF.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF373DUA bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 100 ENCFF126JWD, ENCFF457RYN, ENCFF643CGH 4122423719 ENCODE Processing Pipeline b5928c78d4c91b4b39990476a19e4d7b https://www.encodeproject.org/files/ENCFF373DUA/@@download/ENCFF373DUA.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF214HPX bam unfiltered alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 100 ENCFF126JWD, ENCFF457RYN, ENCFF643CGH 5804657468 ENCODE Processing Pipeline 94a47bead20a640e5554dcbd1ff7c7c1 https://www.encodeproject.org/files/ENCFF214HPX/@@download/ENCFF214HPX.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF382QTB bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 100 ENCFF169CRK, ENCFF367HUF, ENCFF643CGH 4036680207 ENCODE Processing Pipeline ea502aa95c6b1d7f39d2923e7f7e1a36 https://www.encodeproject.org/files/ENCFF382QTB/@@download/ENCFF382QTB.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF420AYY bam unfiltered alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 100 ENCFF169CRK, ENCFF367HUF, ENCFF643CGH 6369616293 ENCODE Processing Pipeline 43c0019495dc12157fc7c2880ae125dd https://www.encodeproject.org/files/ENCFF420AYY/@@download/ENCFF420AYY.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF606TFQ bam unfiltered alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 100 ENCFF169CRK, ENCFF367HUF, ENCFF807MUK 6366430448 ENCODE Processing Pipeline 4777fe94afa49ebb9d39f0ba9015f97e https://www.encodeproject.org/files/ENCFF606TFQ/@@download/ENCFF606TFQ.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF220SOG bam unfiltered alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 100 ENCFF126JWD, ENCFF457RYN, ENCFF807MUK 5798310846 ENCODE Processing Pipeline 743e63d40ea7189bdbcef0e3c2a9348d https://www.encodeproject.org/files/ENCFF220SOG/@@download/ENCFF220SOG.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF512OEJ bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 100 ENCFF169CRK, ENCFF367HUF, ENCFF807MUK 4035172019 ENCODE Processing Pipeline 987d6216bf3c30b78f77f638e7184106 https://www.encodeproject.org/files/ENCFF512OEJ/@@download/ENCFF512OEJ.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF478OFO bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 100 ENCFF126JWD, ENCFF457RYN, ENCFF807MUK 4120415067 ENCODE Processing Pipeline 5544eda7d5dee708a8f2a991e22da0a9 https://www.encodeproject.org/files/ENCFF478OFO/@@download/ENCFF478OFO.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF466TUD bigWig signal p-value ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF373DUA, ENCFF790TAN 1037386107 ENCODE Processing Pipeline f52e3e4f367d7f62ab21c19ca4c4e961 https://www.encodeproject.org/files/ENCFF466TUD/@@download/ENCFF466TUD.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF830BDI bigWig signal p-value ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF160VXC, ENCFF478OFO 1278470087 ENCODE Processing Pipeline 392e3f806e896b4b704bf6b15f6759e2 https://www.encodeproject.org/files/ENCFF830BDI/@@download/ENCFF830BDI.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF802GSI bigWig fold change over control ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF373DUA, ENCFF790TAN 1417671128 ENCODE Processing Pipeline 0257ebfbb356a95bc4b323ebc11f8d36 https://www.encodeproject.org/files/ENCFF802GSI/@@download/ENCFF802GSI.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF214WAD bigWig fold change over control ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF160VXC, ENCFF478OFO 1401639751 ENCODE Processing Pipeline 9454c092fade19500bf3de624b5db7ca https://www.encodeproject.org/files/ENCFF214WAD/@@download/ENCFF214WAD.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF255XDG bigWig signal p-value ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF382QTB, ENCFF712WXB 1098093658 ENCODE Processing Pipeline 024de5fca280902b7f7b582d67ee2f08 https://www.encodeproject.org/files/ENCFF255XDG/@@download/ENCFF255XDG.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF098NBC bigWig signal p-value ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF512OEJ, ENCFF834TUP 1372257042 ENCODE Processing Pipeline ba619b6f04eeaeb79e7f90de2553ae2e https://www.encodeproject.org/files/ENCFF098NBC/@@download/ENCFF098NBC.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF131RIX bigWig signal p-value ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF373DUA, ENCFF382QTB, ENCFF712WXB, ENCFF790TAN 2167879310 ENCODE Processing Pipeline 855615e905ebd2860ad22ddadb97e028 https://www.encodeproject.org/files/ENCFF131RIX/@@download/ENCFF131RIX.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF594WSC bigWig signal p-value ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF160VXC, ENCFF478OFO, ENCFF512OEJ, ENCFF834TUP 2039391490 ENCODE Processing Pipeline 398e4a17feef766e3a580c5ac14c9bf1 https://www.encodeproject.org/files/ENCFF594WSC/@@download/ENCFF594WSC.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF139ZAI bigWig fold change over control ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF512OEJ, ENCFF834TUP 1409753238 ENCODE Processing Pipeline 6dc589b7fc2953429e850aab8779fdb0 https://www.encodeproject.org/files/ENCFF139ZAI/@@download/ENCFF139ZAI.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF096KZD bigWig fold change over control ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF382QTB, ENCFF712WXB 1409908134 ENCODE Processing Pipeline 2b22ef8db61e2025b274b84bcb2b8a1f https://www.encodeproject.org/files/ENCFF096KZD/@@download/ENCFF096KZD.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF783IOJ bigWig fold change over control ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF160VXC, ENCFF478OFO, ENCFF512OEJ, ENCFF834TUP 2334099370 ENCODE Processing Pipeline bf43d4691a6be24de102ecfd370bc240 https://www.encodeproject.org/files/ENCFF783IOJ/@@download/ENCFF783IOJ.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF263MQY bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF160VXC, ENCFF478OFO 7015651 ENCODE Processing Pipeline 9dafa63525ad4fba374d03ff634f5cdd https://www.encodeproject.org/files/ENCFF263MQY/@@download/ENCFF263MQY.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF481PMC bigWig fold change over control ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF373DUA, ENCFF382QTB, ENCFF712WXB, ENCFF790TAN 2345702691 ENCODE Processing Pipeline 57e6aec9b6ac4a15a64061e4798e4b81 https://www.encodeproject.org/files/ENCFF481PMC/@@download/ENCFF481PMC.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF164BVB bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF512OEJ, ENCFF834TUP 7021524 ENCODE Processing Pipeline f0b86a668bd367ffc7369bf13feb85fa https://www.encodeproject.org/files/ENCFF164BVB/@@download/ENCFF164BVB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF034DTN bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF160VXC, ENCFF478OFO, ENCFF512OEJ, ENCFF834TUP 7255556 ENCODE Processing Pipeline 4ac31635812722fe06d173a2b4d1ca88 https://www.encodeproject.org/files/ENCFF034DTN/@@download/ENCFF034DTN.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF961WKS bigBed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF263MQY 13619149 ENCODE Processing Pipeline 6a452c0c8a9ae09bdced8bc3f57747fb https://www.encodeproject.org/files/ENCFF961WKS/@@download/ENCFF961WKS.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF718BGA bigBed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF164BVB 13146896 ENCODE Processing Pipeline 059ed6b851386c9ef2af9f0c863a5bd3 https://www.encodeproject.org/files/ENCFF718BGA/@@download/ENCFF718BGA.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF815VNX bigBed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF034DTN 13675646 ENCODE Processing Pipeline 993be9f7c36a31561118a29d832e2cbf https://www.encodeproject.org/files/ENCFF815VNX/@@download/ENCFF815VNX.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF737ZGG bed narrowPeak conservative idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF034DTN, ENCFF164BVB, ENCFF263MQY 783119 ENCODE Processing Pipeline e453b6a71d920c99675d594cd395e5b5 https://www.encodeproject.org/files/ENCFF737ZGG/@@download/ENCFF737ZGG.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF803VVQ bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF373DUA, ENCFF790TAN 7023601 ENCODE Processing Pipeline c4a33a375f2e1b6005b200d364160a2a https://www.encodeproject.org/files/ENCFF803VVQ/@@download/ENCFF803VVQ.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF836ZXF bigBed narrowPeak conservative idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF737ZGG 1549009 ENCODE Processing Pipeline deeb430d38c1abb354da46cf0531d413 https://www.encodeproject.org/files/ENCFF836ZXF/@@download/ENCFF836ZXF.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF958KNK bed narrowPeak optimal idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF034DTN, ENCFF164BVB, ENCFF263MQY 1074003 ENCODE Processing Pipeline 9766f5508a9d7c4285265a20084a2850 https://www.encodeproject.org/files/ENCFF958KNK/@@download/ENCFF958KNK.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF950AHH bigBed narrowPeak optimal idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF958KNK 1997182 ENCODE Processing Pipeline 0b071fb73fd646425c96876d9e7111fc https://www.encodeproject.org/files/ENCFF950AHH/@@download/ENCFF950AHH.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF983STO bigBed narrowPeak optimal idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF937OKC 2066419 ENCODE Processing Pipeline 16d749a7a28b57fb5f852ed467d963eb https://www.encodeproject.org/files/ENCFF983STO/@@download/ENCFF983STO.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF225ALT bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF373DUA, ENCFF382QTB, ENCFF712WXB, ENCFF790TAN 7367777 ENCODE Processing Pipeline 4aaf97f8efb926db91a63f5abb646013 https://www.encodeproject.org/files/ENCFF225ALT/@@download/ENCFF225ALT.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF217UTL bigBed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF803VVQ 13635584 ENCODE Processing Pipeline 7c57f0bb17605f59984dd0299e4a9153 https://www.encodeproject.org/files/ENCFF217UTL/@@download/ENCFF217UTL.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF937OKC bed narrowPeak optimal idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF151HWD, ENCFF225ALT, ENCFF419RSJ, ENCFF803VVQ 1113570 ENCODE Processing Pipeline 514035b47c592feb695ca9c9c919d4c6 https://www.encodeproject.org/files/ENCFF937OKC/@@download/ENCFF937OKC.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF151HWD bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF382QTB, ENCFF712WXB 7027515 ENCODE Processing Pipeline 7f0d84569ebc72919e0aef1ed4f72e7b https://www.encodeproject.org/files/ENCFF151HWD/@@download/ENCFF151HWD.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF933VGF bigBed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF151HWD 13159925 ENCODE Processing Pipeline 76cccd0c86e9bf757105e6bdcc78d0c3 https://www.encodeproject.org/files/ENCFF933VGF/@@download/ENCFF933VGF.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF902FQQ bigBed narrowPeak conservative idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF011BHF 1607086 ENCODE Processing Pipeline 8c80ad4311bf67514e53eeefffaa655a https://www.encodeproject.org/files/ENCFF902FQQ/@@download/ENCFF902FQQ.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF704UGS bigBed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF225ALT 13821431 ENCODE Processing Pipeline 28a0102502f2bd5a859b1e91f6819f80 https://www.encodeproject.org/files/ENCFF704UGS/@@download/ENCFF704UGS.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF011BHF bed narrowPeak conservative idr thresholded peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF151HWD, ENCFF225ALT, ENCFF419RSJ, ENCFF803VVQ 816354 ENCODE Processing Pipeline aa3885a519239e88509b94ea5f466397 https://www.encodeproject.org/files/ENCFF011BHF/@@download/ENCFF011BHF.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF666SRS fastq reads ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1375627520 Richard Myers, HAIB 786d282780d6d2db03cb6fa256524aa6 https://www.encodeproject.org/files/ENCFF666SRS/@@download/ENCFF666SRS.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF512QZH bam unfiltered alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 76 ENCFF666SRS, ENCFF807MUK 1467238917 ENCODE Processing Pipeline 845a8d2a8cf3ec46b62454888ee72160 https://www.encodeproject.org/files/ENCFF512QZH/@@download/ENCFF512QZH.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF392USJ bam unfiltered alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 76 ENCFF643CGH, ENCFF666SRS 1469749784 ENCODE Processing Pipeline a29c4ca2215aacdbcd77678ee1f93d21 https://www.encodeproject.org/files/ENCFF392USJ/@@download/ENCFF392USJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF971DOF bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 76 ENCFF666SRS, ENCFF807MUK 1112491964 ENCODE Processing Pipeline c09e15ff1e316d7678ecd709a805f9ee https://www.encodeproject.org/files/ENCFF971DOF/@@download/ENCFF971DOF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF295FAD bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 76 ENCFF643CGH, ENCFF666SRS 1112963946 ENCODE Processing Pipeline ba799f6eed82f702b60e06aa622ce94a https://www.encodeproject.org/files/ENCFF295FAD/@@download/ENCFF295FAD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF816KGP fastq reads ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 2342178801 Richard Myers, HAIB f2060fae016b337f72e436f7e79ea9ee https://www.encodeproject.org/files/ENCFF816KGP/@@download/ENCFF816KGP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF651EWK bam unfiltered alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF816KGP 2706716708 ENCODE Processing Pipeline c3f38e768399111b54be152f70b390af https://www.encodeproject.org/files/ENCFF651EWK/@@download/ENCFF651EWK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF792WHM bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF816KGP 2011357202 ENCODE Processing Pipeline ae919fbc5b53fd703c24f7ec86735a60 https://www.encodeproject.org/files/ENCFF792WHM/@@download/ENCFF792WHM.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF799WCT bam unfiltered alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 76 ENCFF807MUK, ENCFF816KGP 2703163274 ENCODE Processing Pipeline 3d5a5d7047cd94f2fb800f2f3e90102e https://www.encodeproject.org/files/ENCFF799WCT/@@download/ENCFF799WCT.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF700RMC bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 76 ENCFF807MUK, ENCFF816KGP 2010739545 ENCODE Processing Pipeline f375de62c4f6235a470181b0b20ad3c0 https://www.encodeproject.org/files/ENCFF700RMC/@@download/ENCFF700RMC.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF882VKJ bigWig fold change over control ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF971DOF 446583232 ENCODE Processing Pipeline cb64a2b8d6e8c1f006ad6fd5960469cc https://www.encodeproject.org/files/ENCFF882VKJ/@@download/ENCFF882VKJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF778BOJ bigWig signal p-value ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF792WHM 677672716 ENCODE Processing Pipeline f8687202610bae8588aaea76e0dc9029 https://www.encodeproject.org/files/ENCFF778BOJ/@@download/ENCFF778BOJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF637JRS bigWig signal p-value ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF295FAD, ENCFF792WHM 672298268 ENCODE Processing Pipeline 223367cad5b5572f0c28b5c65002f38b https://www.encodeproject.org/files/ENCFF637JRS/@@download/ENCFF637JRS.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF556ZMM bigWig signal p-value ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF295FAD 583591521 ENCODE Processing Pipeline 07342210fbfd91f55e4fe82497ef08d6 https://www.encodeproject.org/files/ENCFF556ZMM/@@download/ENCFF556ZMM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF980MRR bigWig fold change over control ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF295FAD 430521343 ENCODE Processing Pipeline ac3bf93c2c981771973ae2f4c5dbef9e https://www.encodeproject.org/files/ENCFF980MRR/@@download/ENCFF980MRR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF242PUG bigWig signal p-value ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF971DOF 522823389 ENCODE Processing Pipeline 5d607b09864f81c82c8992df1d53b909 https://www.encodeproject.org/files/ENCFF242PUG/@@download/ENCFF242PUG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF137XCJ bigWig signal p-value ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF700RMC 678075253 ENCODE Processing Pipeline 25936a6b15e67be135634c34c325a391 https://www.encodeproject.org/files/ENCFF137XCJ/@@download/ENCFF137XCJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF677UIK bigWig signal p-value ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF700RMC, ENCFF971DOF 669375685 ENCODE Processing Pipeline e791b7cc71f49752720391436baae105 https://www.encodeproject.org/files/ENCFF677UIK/@@download/ENCFF677UIK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF373HOQ bigWig fold change over control ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF792WHM 599762085 ENCODE Processing Pipeline 16c24bb6a2579be6aaa2ff5e9bea278d https://www.encodeproject.org/files/ENCFF373HOQ/@@download/ENCFF373HOQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF310AFR bigWig fold change over control ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF700RMC 598939992 ENCODE Processing Pipeline c66dcb293d90419a49c319f04dd97990 https://www.encodeproject.org/files/ENCFF310AFR/@@download/ENCFF310AFR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF916DXW bigWig fold change over control ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF295FAD, ENCFF792WHM 921866991 ENCODE Processing Pipeline 5b2574dd0ce9a775625e00195b6fde49 https://www.encodeproject.org/files/ENCFF916DXW/@@download/ENCFF916DXW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF643WIF bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF700RMC, ENCFF971DOF 7038221 ENCODE Processing Pipeline aa5c79a8504b88e3d8a6aca0f64634a9 https://www.encodeproject.org/files/ENCFF643WIF/@@download/ENCFF643WIF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF447QUH bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF971DOF 6225304 ENCODE Processing Pipeline 3002bf6fad98dcca32ffe8354fd5a7f2 https://www.encodeproject.org/files/ENCFF447QUH/@@download/ENCFF447QUH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF752BUG bigWig fold change over control ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF700RMC, ENCFF971DOF 914721777 ENCODE Processing Pipeline 684253b0a48db0ee8412d528835cf804 https://www.encodeproject.org/files/ENCFF752BUG/@@download/ENCFF752BUG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF988PCN bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF700RMC 6697847 ENCODE Processing Pipeline dd592234b130d5873b6da99f867ba946 https://www.encodeproject.org/files/ENCFF988PCN/@@download/ENCFF988PCN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF198CKM bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF792WHM 6701927 ENCODE Processing Pipeline be266231b0d24bf541b4d62a5c78900a https://www.encodeproject.org/files/ENCFF198CKM/@@download/ENCFF198CKM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF514FOY bigBed narrowPeak conservative idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF841GUR 253423 ENCODE Processing Pipeline 2610c99eb2ebf5848964bf347af4ebc2 https://www.encodeproject.org/files/ENCFF514FOY/@@download/ENCFF514FOY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF533DJI bigBed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF447QUH 13042537 ENCODE Processing Pipeline 726037e08bca114732163814a098b53d https://www.encodeproject.org/files/ENCFF533DJI/@@download/ENCFF533DJI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF218SUS bigBed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF643WIF 12681029 ENCODE Processing Pipeline 6005ab4f40ba60b0eaa5577d291e0fd7 https://www.encodeproject.org/files/ENCFF218SUS/@@download/ENCFF218SUS.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF571AQS bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF295FAD, ENCFF792WHM 7051823 ENCODE Processing Pipeline 9deb46fae6ad6ada387218c5af6885f9 https://www.encodeproject.org/files/ENCFF571AQS/@@download/ENCFF571AQS.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF075LQF bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF295FAD 6076901 ENCODE Processing Pipeline 4c6392dccb4c0c5f9a1793b1483de1a7 https://www.encodeproject.org/files/ENCFF075LQF/@@download/ENCFF075LQF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF247BIW bigBed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF988PCN 12570589 ENCODE Processing Pipeline 47a8cac4dd744848439699fe130676b2 https://www.encodeproject.org/files/ENCFF247BIW/@@download/ENCFF247BIW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF937LVR bigBed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF571AQS 12746890 ENCODE Processing Pipeline c2ce46a2d307a24c6c27fc813e47ef62 https://www.encodeproject.org/files/ENCFF937LVR/@@download/ENCFF937LVR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF604TUF bigBed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF075LQF 13027954 ENCODE Processing Pipeline 3dd94640fca2a3e169b8b434e0ccc22b https://www.encodeproject.org/files/ENCFF604TUF/@@download/ENCFF604TUF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF841GUR bed narrowPeak conservative idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF447QUH, ENCFF643WIF, ENCFF988PCN 113384 ENCODE Processing Pipeline 58d59a10ffa43f3f98dfaadc797410fa https://www.encodeproject.org/files/ENCFF841GUR/@@download/ENCFF841GUR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF763XLN bed narrowPeak optimal idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF447QUH, ENCFF643WIF, ENCFF988PCN 208740 ENCODE Processing Pipeline 8ad14bba8001263317e4d936a270504a https://www.encodeproject.org/files/ENCFF763XLN/@@download/ENCFF763XLN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF368MXR bigBed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF198CKM 12575218 ENCODE Processing Pipeline d30d132f71fbd3f73c3fd06dfab5113f https://www.encodeproject.org/files/ENCFF368MXR/@@download/ENCFF368MXR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF599LRL bigBed narrowPeak optimal idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF763XLN 389127 ENCODE Processing Pipeline 8ad7e4c858331292a31710a4ce1a2b21 https://www.encodeproject.org/files/ENCFF599LRL/@@download/ENCFF599LRL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF817WSC bigBed narrowPeak conservative idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF674FRU 266696 ENCODE Processing Pipeline 7438536ceec89ecab31f118c9707fcb5 https://www.encodeproject.org/files/ENCFF817WSC/@@download/ENCFF817WSC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF674FRU bed narrowPeak conservative idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF075LQF, ENCFF198CKM, ENCFF419RSJ, ENCFF571AQS 121196 ENCODE Processing Pipeline 360a9e3d6ef15b6783fddfb3537974f4 https://www.encodeproject.org/files/ENCFF674FRU/@@download/ENCFF674FRU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF683QEX bed narrowPeak optimal idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF075LQF, ENCFF198CKM, ENCFF419RSJ, ENCFF571AQS 217802 ENCODE Processing Pipeline 3ad6cf9efee36907de2a3d7e306db6dc https://www.encodeproject.org/files/ENCFF683QEX/@@download/ENCFF683QEX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF054DCI bigBed narrowPeak optimal idr thresholded peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF683QEX 485276 ENCODE Processing Pipeline 527246fd6d9db44a5c533e4b6542f267 https://www.encodeproject.org/files/ENCFF054DCI/@@download/ENCFF054DCI.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF959QTN fastq reads ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 1 50 single-ended 1329891159 Richard Myers, HAIB 139c4b5b2b7df7f0830d71495b962e7c SRA:SRR5339427 https://www.encodeproject.org/files/ENCFF959QTN/@@download/ENCFF959QTN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF204JMO fastq reads ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 1 50 single-ended 2137886747 Richard Myers, HAIB 3d7df65026afdbf0ed8584ee3a91c06f SRA:SRR5339426 https://www.encodeproject.org/files/ENCFF204JMO/@@download/ENCFF204JMO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF946BKE bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 50 ENCFF807MUK, ENCFF959QTN 1069901936 ENCODE Processing Pipeline b9efb0051d67fbf9492c1fe10f09a005 https://www.encodeproject.org/files/ENCFF946BKE/@@download/ENCFF946BKE.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF862PIC bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 50 ENCFF204JMO, ENCFF807MUK 1624723653 ENCODE Processing Pipeline 2738b8297ac2a9fc8786e17bc7844de8 https://www.encodeproject.org/files/ENCFF862PIC/@@download/ENCFF862PIC.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF087TRL bam unfiltered alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 50 ENCFF643CGH, ENCFF959QTN 1435019191 ENCODE Processing Pipeline c9eb686b986041921981cdc419cd16e9 https://www.encodeproject.org/files/ENCFF087TRL/@@download/ENCFF087TRL.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF678DAV bam unfiltered alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 50 ENCFF204JMO, ENCFF643CGH 2256386454 ENCODE Processing Pipeline a332934800c5ac0b62c19f9912c07849 https://www.encodeproject.org/files/ENCFF678DAV/@@download/ENCFF678DAV.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF587PVQ bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 50 ENCFF643CGH, ENCFF959QTN 1069440142 ENCODE Processing Pipeline ff7c03249ca5cfec1c27f89d62d949d1 https://www.encodeproject.org/files/ENCFF587PVQ/@@download/ENCFF587PVQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF742TAS bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 50 ENCFF204JMO, ENCFF643CGH 1624070612 ENCODE Processing Pipeline 326fef1303a337b302cab0c95306f98b https://www.encodeproject.org/files/ENCFF742TAS/@@download/ENCFF742TAS.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF072ULT bigWig signal p-value ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF742TAS 1129064676 ENCODE Processing Pipeline e7492caede283d63c043dcf0f441fb94 https://www.encodeproject.org/files/ENCFF072ULT/@@download/ENCFF072ULT.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF571OMJ bigWig signal p-value ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF587PVQ 970182561 ENCODE Processing Pipeline 1a0f09f2bbdeeaca28ec39edf0bfe5a3 https://www.encodeproject.org/files/ENCFF571OMJ/@@download/ENCFF571OMJ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF536WVV bigWig signal p-value ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF587PVQ, ENCFF742TAS 1352603340 ENCODE Processing Pipeline bc95db5d23fa9a71d4cb0ed4d55616f2 https://www.encodeproject.org/files/ENCFF536WVV/@@download/ENCFF536WVV.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF541PYZ bigWig fold change over control ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF742TAS 906939221 ENCODE Processing Pipeline d7eb652986ee293a724a0608d60c4769 https://www.encodeproject.org/files/ENCFF541PYZ/@@download/ENCFF541PYZ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF008DSY bigWig fold change over control ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF587PVQ 697503867 ENCODE Processing Pipeline 98a2461e7c87a4e1cadd813f8fea5d9c https://www.encodeproject.org/files/ENCFF008DSY/@@download/ENCFF008DSY.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF957KCO bigWig fold change over control ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF587PVQ, ENCFF742TAS 1295839093 ENCODE Processing Pipeline 702fa1d3ef2e146000378859086fcc7f https://www.encodeproject.org/files/ENCFF957KCO/@@download/ENCFF957KCO.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF482KCZ bigBed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF575VCO 13336359 ENCODE Processing Pipeline 4117164d454471ffa216c3d3e0462103 https://www.encodeproject.org/files/ENCFF482KCZ/@@download/ENCFF482KCZ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF575VCO bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF587PVQ, ENCFF742TAS 6926185 ENCODE Processing Pipeline f989a2624676b999e705716b76e3d2f5 https://www.encodeproject.org/files/ENCFF575VCO/@@download/ENCFF575VCO.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF490VXZ bigBed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF344EVG 11222833 ENCODE Processing Pipeline 4a6df3259383e49bfc03308460d275d8 https://www.encodeproject.org/files/ENCFF490VXZ/@@download/ENCFF490VXZ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF621JVC bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF742TAS 6313460 ENCODE Processing Pipeline fef2a2cf175ee3d8a5aa91625c03603f https://www.encodeproject.org/files/ENCFF621JVC/@@download/ENCFF621JVC.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF344EVG bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF587PVQ 5960377 ENCODE Processing Pipeline 37d635e74414b9544ba832e25e7c05bf https://www.encodeproject.org/files/ENCFF344EVG/@@download/ENCFF344EVG.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF083NMR bigBed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF621JVC 13405623 ENCODE Processing Pipeline b795a2d706a378f3f7427e57876df138 https://www.encodeproject.org/files/ENCFF083NMR/@@download/ENCFF083NMR.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF357AHH bed narrowPeak conservative idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF344EVG, ENCFF419RSJ, ENCFF575VCO, ENCFF621JVC 94723 ENCODE Processing Pipeline f2d4205f963f9e65d6a05c437d088950 https://www.encodeproject.org/files/ENCFF357AHH/@@download/ENCFF357AHH.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF512IAI bed narrowPeak optimal idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF344EVG, ENCFF419RSJ, ENCFF575VCO, ENCFF621JVC 108529 ENCODE Processing Pipeline e33e20bf2dddde8658e603a7255dc012 https://www.encodeproject.org/files/ENCFF512IAI/@@download/ENCFF512IAI.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF213MTE bigBed narrowPeak conservative idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF357AHH 237864 ENCODE Processing Pipeline 196f62736b7483857236a228ec6e5628 https://www.encodeproject.org/files/ENCFF213MTE/@@download/ENCFF213MTE.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF320ICM bigBed narrowPeak optimal idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF512IAI 258805 ENCODE Processing Pipeline 4c70731f70ba41eafbee379da6701472 https://www.encodeproject.org/files/ENCFF320ICM/@@download/ENCFF320ICM.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF262SAL bam unfiltered alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 50 ENCFF807MUK, ENCFF959QTN 1431937004 ENCODE Processing Pipeline fb194f8702a078062f923f1c65aa7078 https://www.encodeproject.org/files/ENCFF262SAL/@@download/ENCFF262SAL.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF344CZR bam unfiltered alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 50 ENCFF204JMO, ENCFF807MUK 2251395171 ENCODE Processing Pipeline 14d95680fe5c5dba396781a0631e1c88 https://www.encodeproject.org/files/ENCFF344CZR/@@download/ENCFF344CZR.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF667OHN bigWig signal p-value ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC 1132997520 ENCODE Processing Pipeline b964841134dd3499d1c6eef97956ba3e https://www.encodeproject.org/files/ENCFF667OHN/@@download/ENCFF667OHN.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF127VYL bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC, ENCFF946BKE 6960660 ENCODE Processing Pipeline 424c487b448113ec1d5a48e87875ff0e https://www.encodeproject.org/files/ENCFF127VYL/@@download/ENCFF127VYL.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF031KDI bigBed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF127VYL 13330277 ENCODE Processing Pipeline a6719e97eebdef92dc7adc7410094b24 https://www.encodeproject.org/files/ENCFF031KDI/@@download/ENCFF031KDI.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF620YDD bigWig fold change over control ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC 863121876 ENCODE Processing Pipeline db7a5a497abb7ba3b794b4094afe8533 https://www.encodeproject.org/files/ENCFF620YDD/@@download/ENCFF620YDD.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF206YXA bigWig signal p-value ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF946BKE 1039092250 ENCODE Processing Pipeline 8944a9546d816a32529ac300532f0c66 https://www.encodeproject.org/files/ENCFF206YXA/@@download/ENCFF206YXA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF307AKP bigWig signal p-value ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC, ENCFF946BKE 1369292659 ENCODE Processing Pipeline afb4dee3188355c6d4cd12924c4583f9 https://www.encodeproject.org/files/ENCFF307AKP/@@download/ENCFF307AKP.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF688MOC bigWig fold change over control ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF946BKE 739882166 ENCODE Processing Pipeline 384e9e4f39faa589c2095b6dbdec9f91 https://www.encodeproject.org/files/ENCFF688MOC/@@download/ENCFF688MOC.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF005PNR bigWig fold change over control ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC, ENCFF946BKE 1251035049 ENCODE Processing Pipeline 8489dea74ff5fc7d95975b74f9ea1203 https://www.encodeproject.org/files/ENCFF005PNR/@@download/ENCFF005PNR.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF588ZYR bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC 6374559 ENCODE Processing Pipeline c33c3673740b566fbda54f4be7e1c3de https://www.encodeproject.org/files/ENCFF588ZYR/@@download/ENCFF588ZYR.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF086FEW bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF946BKE 5994594 ENCODE Processing Pipeline 1a05c82267f19e88a3885da5e35280e9 https://www.encodeproject.org/files/ENCFF086FEW/@@download/ENCFF086FEW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF182AYX bigBed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF588ZYR 13407620 ENCODE Processing Pipeline 5bc76e5a2e1e269c91b0d74f2e954839 https://www.encodeproject.org/files/ENCFF182AYX/@@download/ENCFF182AYX.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF387GNZ bigBed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF086FEW 13363241 ENCODE Processing Pipeline 1fbcd3bc6c731ed0af4ce6af15f94238 https://www.encodeproject.org/files/ENCFF387GNZ/@@download/ENCFF387GNZ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF850HGO bed narrowPeak conservative idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF086FEW, ENCFF127VYL, ENCFF588ZYR 93873 ENCODE Processing Pipeline d2895077f392374a42dbb1104cb96b8f https://www.encodeproject.org/files/ENCFF850HGO/@@download/ENCFF850HGO.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF948XAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF850HGO 235256 ENCODE Processing Pipeline 041b29dbaafe0a87a94e4cbea83fcad3 https://www.encodeproject.org/files/ENCFF948XAQ/@@download/ENCFF948XAQ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF249EZR bed narrowPeak optimal idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF086FEW, ENCFF127VYL, ENCFF588ZYR 107201 ENCODE Processing Pipeline e6d734cd2dddbdb65175f4aac5d619c6 https://www.encodeproject.org/files/ENCFF249EZR/@@download/ENCFF249EZR.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF629SVO bigBed narrowPeak optimal idr thresholded peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF249EZR 255311 ENCODE Processing Pipeline d9516d5534c39b09c44254327a3b3842 https://www.encodeproject.org/files/ENCFF629SVO/@@download/ENCFF629SVO.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF742XBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF001TDO, ENCFF103IWV 181661 ENCODE Processing Pipeline 1b9ada6fed2a3c13f248a6437613ba50 https://www.encodeproject.org/files/ENCFF742XBE/@@download/ENCFF742XBE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF325MHC bigWig signal p-value ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF061QOJ, ENCFF657MSB 683483458 ENCODE Processing Pipeline f0dd9fdc3ec727455c909a17c9213ff1 https://www.encodeproject.org/files/ENCFF325MHC/@@download/ENCFF325MHC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF438JCC bigWig fold change over control ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF061QOJ, ENCFF657MSB 712558391 ENCODE Processing Pipeline d214e184c0e29630211f7fed2f5d5ada https://www.encodeproject.org/files/ENCFF438JCC/@@download/ENCFF438JCC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF103IWV bed narrowPeak peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF061QOJ, ENCFF657MSB 5575003 ENCODE Processing Pipeline 4121a132e5bc5312012440d570322a3a https://www.encodeproject.org/files/ENCFF103IWV/@@download/ENCFF103IWV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF532PFF bigBed narrowPeak peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF103IWV 11184772 ENCODE Processing Pipeline ef13d971972a8135d49487b22833a834 https://www.encodeproject.org/files/ENCFF532PFF/@@download/ENCFF532PFF.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF309ULX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF742XBE 329065 ENCODE Processing Pipeline 4c3e3e0411982d30200a279fc908efa5 https://www.encodeproject.org/files/ENCFF309ULX/@@download/ENCFF309ULX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF191GQU fastq reads ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 1 50 single-ended 1323562242 Richard Myers, HAIB 5d31d8e5caa420da75cfc40c3d8c0ad1 https://www.encodeproject.org/files/ENCFF191GQU/@@download/ENCFF191GQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF674HKI bam unfiltered alignments ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 50 ENCFF191GQU, ENCFF807MUK 1502109512 ENCODE Processing Pipeline 90b39f5ea133811ff7f23276fa388039 https://www.encodeproject.org/files/ENCFF674HKI/@@download/ENCFF674HKI.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF254RAB bam unfiltered alignments ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 50 ENCFF191GQU, ENCFF643CGH 1505851960 ENCODE Processing Pipeline ef9d4f222404c32de9588f56ddea9b2b https://www.encodeproject.org/files/ENCFF254RAB/@@download/ENCFF254RAB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF657MSB bam alignments ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 50 ENCFF191GQU, ENCFF807MUK 1112004726 ENCODE Processing Pipeline 3d5955d75f5ff13ef5733c37a71742a2 https://www.encodeproject.org/files/ENCFF657MSB/@@download/ENCFF657MSB.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF083FZS bam alignments ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 50 ENCFF191GQU, ENCFF643CGH 1111733083 ENCODE Processing Pipeline a378a22805a04b4ae2bdff0c16f86dfa https://www.encodeproject.org/files/ENCFF083FZS/@@download/ENCFF083FZS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF779ZQJ bigBed narrowPeak peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF550OMJ 11263135 ENCODE Processing Pipeline 743438c4b333374fde79f469d2ad2cee https://www.encodeproject.org/files/ENCFF779ZQJ/@@download/ENCFF779ZQJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF274MAU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF296DCP 335457 ENCODE Processing Pipeline b07e622c3d7fcd7432a85322fab6d965 https://www.encodeproject.org/files/ENCFF274MAU/@@download/ENCFF274MAU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF550OMJ bed narrowPeak peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF083FZS, ENCFF332SVJ 5830001 ENCODE Processing Pipeline ea10754542abdb37a21219b02eb7bfa1 https://www.encodeproject.org/files/ENCFF550OMJ/@@download/ENCFF550OMJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF296DCP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF419RSJ, ENCFF550OMJ 185185 ENCODE Processing Pipeline 3525cc1c43fb75e360241cc9b0a23fa0 https://www.encodeproject.org/files/ENCFF296DCP/@@download/ENCFF296DCP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF704YNA bigWig signal p-value ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF083FZS, ENCFF332SVJ 698418769 ENCODE Processing Pipeline 32b76b09e45e4abae1195d0e288a9783 https://www.encodeproject.org/files/ENCFF704YNA/@@download/ENCFF704YNA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF059WGK bigWig fold change over control ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF083FZS, ENCFF332SVJ 653219234 ENCODE Processing Pipeline efe28cf76a81e528a6a48d6ae0691a50 https://www.encodeproject.org/files/ENCFF059WGK/@@download/ENCFF059WGK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF622IRP fastq reads ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF483DQG 4005940551 Michael Snyder, Stanford e08e4aca7564ca48839154a9b42afc47 https://www.encodeproject.org/files/ENCFF622IRP/@@download/ENCFF622IRP.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF699WWO fastq reads ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF864GEB 6570123637 Michael Snyder, Stanford dcde46f116ad3624d8f3bfe5237c9b22 https://www.encodeproject.org/files/ENCFF699WWO/@@download/ENCFF699WWO.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF864GEB fastq reads ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF699WWO 7446589928 Michael Snyder, Stanford eb10f5f248d3be118c009a756447f5e7 https://www.encodeproject.org/files/ENCFF864GEB/@@download/ENCFF864GEB.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF483DQG fastq reads ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF622IRP 3803268821 Michael Snyder, Stanford 0b986d00b10cb840232b5658e518ad40 https://www.encodeproject.org/files/ENCFF483DQG/@@download/ENCFF483DQG.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF266NEQ bam unfiltered alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF483DQG, ENCFF622IRP, ENCFF807MUK 7310421961 ENCODE Processing Pipeline 703f3ef4a15e649f67e7f3b1f57f47f5 https://www.encodeproject.org/files/ENCFF266NEQ/@@download/ENCFF266NEQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF015UYQ bam unfiltered alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF483DQG, ENCFF622IRP, ENCFF643CGH 7320119076 ENCODE Processing Pipeline ee623e73166130eaecc0971b56551819 https://www.encodeproject.org/files/ENCFF015UYQ/@@download/ENCFF015UYQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF266MRA bam unfiltered alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF699WWO, ENCFF807MUK, ENCFF864GEB 11592770961 ENCODE Processing Pipeline a914bfab281b8fbaf6d34ab1212a2fbd https://www.encodeproject.org/files/ENCFF266MRA/@@download/ENCFF266MRA.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF669PBX bam unfiltered alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF699WWO, ENCFF864GEB 11590840481 ENCODE Processing Pipeline f4459005b089a4aafa54b9f256cfe623 https://www.encodeproject.org/files/ENCFF669PBX/@@download/ENCFF669PBX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF571KDO bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF483DQG, ENCFF622IRP, ENCFF807MUK 5494356551 ENCODE Processing Pipeline 3e8172cd0e828efa9ebf4966588a2838 https://www.encodeproject.org/files/ENCFF571KDO/@@download/ENCFF571KDO.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF903QIT bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF483DQG, ENCFF622IRP, ENCFF643CGH 5505067428 ENCODE Processing Pipeline 8e8bf853066d2afc3d769a0f19301862 https://www.encodeproject.org/files/ENCFF903QIT/@@download/ENCFF903QIT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF510THU bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF699WWO, ENCFF864GEB 5745482112 ENCODE Processing Pipeline 0690c51cf39a56d99c9b46043f1e26ca https://www.encodeproject.org/files/ENCFF510THU/@@download/ENCFF510THU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF658KLO bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF699WWO, ENCFF807MUK, ENCFF864GEB 5739974618 ENCODE Processing Pipeline 8d756f3683bd89a787eeeba4a1bd0c1a https://www.encodeproject.org/files/ENCFF658KLO/@@download/ENCFF658KLO.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF195PLV bigWig signal p-value ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF571KDO, ENCFF834TUP 1952664388 ENCODE Processing Pipeline 1167600530aee7fe8a5531144a755f07 https://www.encodeproject.org/files/ENCFF195PLV/@@download/ENCFF195PLV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF251AWP bigWig signal p-value ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF658KLO, ENCFF834TUP 1526018292 ENCODE Processing Pipeline 5f1a19e973b2c9ae6d4e6b4443668049 https://www.encodeproject.org/files/ENCFF251AWP/@@download/ENCFF251AWP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF647TGL bigWig signal p-value ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF571KDO, ENCFF658KLO, ENCFF834TUP 2386761091 ENCODE Processing Pipeline 621c58673ae590e3f373bf9f25a0ec26 https://www.encodeproject.org/files/ENCFF647TGL/@@download/ENCFF647TGL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF979ULJ bigWig fold change over control ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF571KDO, ENCFF834TUP 2065610471 ENCODE Processing Pipeline 17f92808d8bce688ea98c9838d2ac786 https://www.encodeproject.org/files/ENCFF979ULJ/@@download/ENCFF979ULJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF402OJZ bigWig fold change over control ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF658KLO, ENCFF834TUP 1705076624 ENCODE Processing Pipeline 9f3110ba4d130b4b5315aa332ba57b54 https://www.encodeproject.org/files/ENCFF402OJZ/@@download/ENCFF402OJZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF410NKD bigWig fold change over control ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF571KDO, ENCFF658KLO, ENCFF834TUP 2731741194 ENCODE Processing Pipeline f4dfdec8f8cfc21f47aaac381802d14f https://www.encodeproject.org/files/ENCFF410NKD/@@download/ENCFF410NKD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF917NDP bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF571KDO, ENCFF658KLO, ENCFF834TUP 7281434 ENCODE Processing Pipeline 22be7271bc049d3a511eb197c0c71f03 https://www.encodeproject.org/files/ENCFF917NDP/@@download/ENCFF917NDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF296OXW bigBed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF550GTF 10796336 ENCODE Processing Pipeline 5c2f241c301fcb189cda82f168a42528 https://www.encodeproject.org/files/ENCFF296OXW/@@download/ENCFF296OXW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF298IEA bigBed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF162LKJ 11057404 ENCODE Processing Pipeline a0a6fb0f79ae55079a8bb9551e39f879 https://www.encodeproject.org/files/ENCFF298IEA/@@download/ENCFF298IEA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF922TDM bed narrowPeak optimal idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF162LKJ, ENCFF550GTF, ENCFF917NDP 75060 ENCODE Processing Pipeline 41ea12a0fe93278e96a648164c7ae3b8 https://www.encodeproject.org/files/ENCFF922TDM/@@download/ENCFF922TDM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF162LKJ bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF571KDO, ENCFF834TUP 6957983 ENCODE Processing Pipeline 7320713e5f6becb5840da5d1bc1c7f89 https://www.encodeproject.org/files/ENCFF162LKJ/@@download/ENCFF162LKJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF550GTF bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF658KLO, ENCFF834TUP 7036947 ENCODE Processing Pipeline 8cd478c9e0feffc9ef67b0abe72cf734 https://www.encodeproject.org/files/ENCFF550GTF/@@download/ENCFF550GTF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF080HPG bigBed narrowPeak optimal idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF922TDM 205484 ENCODE Processing Pipeline d6c448a1a56304bdf427c75787187456 https://www.encodeproject.org/files/ENCFF080HPG/@@download/ENCFF080HPG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF415GRK bigBed narrowPeak conservative idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF082PCH 177608 ENCODE Processing Pipeline d64d1718150b11f3b9d4d2f73759e55f https://www.encodeproject.org/files/ENCFF415GRK/@@download/ENCFF415GRK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF009UEL bigBed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF917NDP 13213152 ENCODE Processing Pipeline 59e26a58990b33db99ce4e1e53e6116f https://www.encodeproject.org/files/ENCFF009UEL/@@download/ENCFF009UEL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF082PCH bed narrowPeak conservative idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF162LKJ, ENCFF550GTF, ENCFF917NDP 57696 ENCODE Processing Pipeline 9ba45d7c7b6998e44d37518312210190 https://www.encodeproject.org/files/ENCFF082PCH/@@download/ENCFF082PCH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF183TMP bigWig signal p-value ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF903QIT 1656705751 ENCODE Processing Pipeline 6346aefad4060686633e71096d8d5011 https://www.encodeproject.org/files/ENCFF183TMP/@@download/ENCFF183TMP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF884BQL bigWig signal p-value ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF510THU, ENCFF712WXB 1532328766 ENCODE Processing Pipeline d9efbba994bbf294fd6f878b9b037d5d https://www.encodeproject.org/files/ENCFF884BQL/@@download/ENCFF884BQL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF919FUK bigWig signal p-value ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF510THU, ENCFF712WXB, ENCFF790TAN, ENCFF903QIT 2411749771 ENCODE Processing Pipeline fb82b53fe5a494c2b93a06301973011d https://www.encodeproject.org/files/ENCFF919FUK/@@download/ENCFF919FUK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF042ZIT bigWig fold change over control ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF903QIT 2068737326 ENCODE Processing Pipeline bf47eca7b4cc2330d27fb83d974bfa29 https://www.encodeproject.org/files/ENCFF042ZIT/@@download/ENCFF042ZIT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF995YDO bigWig fold change over control ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF510THU, ENCFF712WXB 1713083195 ENCODE Processing Pipeline bac6bc5f60d28db78bee1c078af32127 https://www.encodeproject.org/files/ENCFF995YDO/@@download/ENCFF995YDO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF086KNG bigWig fold change over control ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF510THU, ENCFF712WXB, ENCFF790TAN, ENCFF903QIT 2750675486 ENCODE Processing Pipeline 6fdcd72713952bf2c6dddbc572f437b1 https://www.encodeproject.org/files/ENCFF086KNG/@@download/ENCFF086KNG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF063BWB bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF903QIT 6863055 ENCODE Processing Pipeline f15697828b8f596d1cfa5958ec6575d9 https://www.encodeproject.org/files/ENCFF063BWB/@@download/ENCFF063BWB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF733VAS bigBed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF063BWB 11078860 ENCODE Processing Pipeline 40a094d73654501e8ee7f5c714faac18 https://www.encodeproject.org/files/ENCFF733VAS/@@download/ENCFF733VAS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF724RDX bigBed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF400JVN 10808353 ENCODE Processing Pipeline 5311bdc887d817d7a7eb392af539225c https://www.encodeproject.org/files/ENCFF724RDX/@@download/ENCFF724RDX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF400JVN bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF510THU, ENCFF712WXB 6965342 ENCODE Processing Pipeline 8823840509fe09ae3b84ec85efbcc182 https://www.encodeproject.org/files/ENCFF400JVN/@@download/ENCFF400JVN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF757RZT bigBed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF519GUH 13239728 ENCODE Processing Pipeline 03a2f84df123ad76f3c3365e11dda086 https://www.encodeproject.org/files/ENCFF757RZT/@@download/ENCFF757RZT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF519GUH bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF510THU, ENCFF712WXB, ENCFF790TAN, ENCFF903QIT 7287103 ENCODE Processing Pipeline 951cd859c1af33fe38bc59a473781806 https://www.encodeproject.org/files/ENCFF519GUH/@@download/ENCFF519GUH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF977FJV bigBed narrowPeak optimal idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF584SNZ 209209 ENCODE Processing Pipeline 553968be42dbc0de85bc2d24ff66728a https://www.encodeproject.org/files/ENCFF977FJV/@@download/ENCFF977FJV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF097AKG bed narrowPeak conservative idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063BWB, ENCFF400JVN, ENCFF419RSJ, ENCFF519GUH 57967 ENCODE Processing Pipeline 41687a50fc2f72b7078d66894c8a9471 https://www.encodeproject.org/files/ENCFF097AKG/@@download/ENCFF097AKG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF231VLP bigBed narrowPeak conservative idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF097AKG 179514 ENCODE Processing Pipeline 2ec77cfb88e5d02746f4fff540087295 https://www.encodeproject.org/files/ENCFF231VLP/@@download/ENCFF231VLP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF584SNZ bed narrowPeak optimal idr thresholded peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063BWB, ENCFF400JVN, ENCFF419RSJ, ENCFF519GUH 75816 ENCODE Processing Pipeline 28d8b072c63a6142f93a5014827e57d0 https://www.encodeproject.org/files/ENCFF584SNZ/@@download/ENCFF584SNZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF288BKY bam unfiltered alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 100 ENCFF098GTH, ENCFF807MUK, ENCFF926UQW 5672809246 ENCODE Processing Pipeline 619ced776359d0ab4d20904fb7744664 https://www.encodeproject.org/files/ENCFF288BKY/@@download/ENCFF288BKY.bam hg19 released missing genetic modification characterization ENCFF499FYB bam unfiltered alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 100 ENCFF099UOS, ENCFF790ADI, ENCFF807MUK 5153421658 ENCODE Processing Pipeline 403f79a70a9e4b8a28b6b0b49cffe46f https://www.encodeproject.org/files/ENCFF499FYB/@@download/ENCFF499FYB.bam hg19 released missing genetic modification characterization ENCFF926UQW fastq reads ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF098GTH 2591212835 Michael Snyder, Stanford 522d135f399dbffe9a67638757eb54f7 SRA:SRR5111940 https://www.encodeproject.org/files/ENCFF926UQW/@@download/ENCFF926UQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF860YMH/ released missing genetic modification characterization ENCFF099UOS fastq reads ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF790ADI 2377656608 Michael Snyder, Stanford 50ea574c8b29938654e0eecabe4c15da SRA:SRR5111941 https://www.encodeproject.org/files/ENCFF099UOS/@@download/ENCFF099UOS.fastq.gz Illumina HiSeq 2000 /files/ENCFF860YMH/ released missing genetic modification characterization ENCFF790ADI fastq reads ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF099UOS 2307588617 Michael Snyder, Stanford 07153eed45283699920ecad28a689df4 SRA:SRR5111941 https://www.encodeproject.org/files/ENCFF790ADI/@@download/ENCFF790ADI.fastq.gz Illumina HiSeq 2000 /files/ENCFF769QGP/ released missing genetic modification characterization ENCFF098GTH fastq reads ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF926UQW 2653142922 Michael Snyder, Stanford 767448936a59843fe492eda25e4139aa SRA:SRR5111940 https://www.encodeproject.org/files/ENCFF098GTH/@@download/ENCFF098GTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF769QGP/ released missing genetic modification characterization ENCFF373VCV bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 100 ENCFF099UOS, ENCFF790ADI, ENCFF807MUK 3999945910 ENCODE Processing Pipeline f921d90eb2543d86d731dc2d8b238e07 https://www.encodeproject.org/files/ENCFF373VCV/@@download/ENCFF373VCV.bam hg19 released missing genetic modification characterization ENCFF124VCI bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 100 ENCFF098GTH, ENCFF807MUK, ENCFF926UQW 4581542885 ENCODE Processing Pipeline 747f107adcd5c4b4b76c1e3d32477e0e https://www.encodeproject.org/files/ENCFF124VCI/@@download/ENCFF124VCI.bam hg19 released missing genetic modification characterization ENCFF109QPO bigWig fold change over control ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF373VCV, ENCFF936MBZ 864807224 ENCODE Processing Pipeline 19ccb0c8b4f1d37213d4297f0cdfdd39 https://www.encodeproject.org/files/ENCFF109QPO/@@download/ENCFF109QPO.bigWig hg19 released missing genetic modification characterization ENCFF202RWJ bigWig signal p-value ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF373VCV, ENCFF936MBZ 764075863 ENCODE Processing Pipeline 353ba33c6d9c693a4d9b78144878d19b https://www.encodeproject.org/files/ENCFF202RWJ/@@download/ENCFF202RWJ.bigWig hg19 released missing genetic modification characterization ENCFF348ZJL bam unfiltered alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 100 ENCFF099UOS, ENCFF643CGH, ENCFF790ADI 5160772138 ENCODE Processing Pipeline 17e98f9c194ece6266afb372cb6cfe6f https://www.encodeproject.org/files/ENCFF348ZJL/@@download/ENCFF348ZJL.bam GRCh38 released missing genetic modification characterization ENCFF611NQA bam unfiltered alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 100 ENCFF098GTH, ENCFF643CGH, ENCFF926UQW 5679090262 ENCODE Processing Pipeline 74279c9640c98766d2de7db4b2bdc133 https://www.encodeproject.org/files/ENCFF611NQA/@@download/ENCFF611NQA.bam GRCh38 released missing genetic modification characterization ENCFF931HWG bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 100 ENCFF099UOS, ENCFF643CGH, ENCFF790ADI 4001845676 ENCODE Processing Pipeline adb719d0ad46240ef1c3a5d20c9164d0 https://www.encodeproject.org/files/ENCFF931HWG/@@download/ENCFF931HWG.bam GRCh38 released missing genetic modification characterization ENCFF562PEW bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 100 ENCFF098GTH, ENCFF643CGH, ENCFF926UQW 4584921995 ENCODE Processing Pipeline 3565c96ef7c3f2ce6312257d175908ba https://www.encodeproject.org/files/ENCFF562PEW/@@download/ENCFF562PEW.bam GRCh38 released missing genetic modification characterization ENCFF841GEU bigWig signal p-value ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF562PEW, ENCFF700BKM 972331394 ENCODE Processing Pipeline 0afdee8e182a1f0e7919c61ec61705d2 https://www.encodeproject.org/files/ENCFF841GEU/@@download/ENCFF841GEU.bigWig GRCh38 released missing genetic modification characterization ENCFF883ACU bigWig signal p-value ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF700BKM, ENCFF931HWG 888255828 ENCODE Processing Pipeline bdc104b14f170e4890442172c58b8340 https://www.encodeproject.org/files/ENCFF883ACU/@@download/ENCFF883ACU.bigWig GRCh38 released missing genetic modification characterization ENCFF546GCR bigWig signal p-value ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF562PEW, ENCFF700BKM, ENCFF931HWG 950353628 ENCODE Processing Pipeline 896688be746c3fc1cd391df88e0c6872 https://www.encodeproject.org/files/ENCFF546GCR/@@download/ENCFF546GCR.bigWig GRCh38 released missing genetic modification characterization ENCFF244ZUH bigWig fold change over control ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF562PEW, ENCFF700BKM 1023194020 ENCODE Processing Pipeline 416fef4da4cbc1b838343b54eed056b7 https://www.encodeproject.org/files/ENCFF244ZUH/@@download/ENCFF244ZUH.bigWig GRCh38 released missing genetic modification characterization ENCFF756YGO bigWig fold change over control ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF700BKM, ENCFF931HWG 857360577 ENCODE Processing Pipeline c1ef9db2d30022ee130586b313ab933e https://www.encodeproject.org/files/ENCFF756YGO/@@download/ENCFF756YGO.bigWig GRCh38 released missing genetic modification characterization ENCFF446TLB bigWig fold change over control ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF562PEW, ENCFF700BKM, ENCFF931HWG 1506158467 ENCODE Processing Pipeline 5387575559ce56ada5b67b3975746eec https://www.encodeproject.org/files/ENCFF446TLB/@@download/ENCFF446TLB.bigWig GRCh38 released missing genetic modification characterization ENCFF410LYI bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF562PEW, ENCFF700BKM 5925947 ENCODE Processing Pipeline 9299dd6e7ba9c5c6ce6bbb48871ca2b4 https://www.encodeproject.org/files/ENCFF410LYI/@@download/ENCFF410LYI.bed.gz GRCh38 released missing genetic modification characterization ENCFF837QOE bigBed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF410LYI 11221987 ENCODE Processing Pipeline 448bbee848b1dd603f49ef1a6421659c https://www.encodeproject.org/files/ENCFF837QOE/@@download/ENCFF837QOE.bigBed GRCh38 released missing genetic modification characterization ENCFF774XTZ bigBed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF752QBL 11180416 ENCODE Processing Pipeline 4d975921398ff528f87317d2177ae925 https://www.encodeproject.org/files/ENCFF774XTZ/@@download/ENCFF774XTZ.bigBed GRCh38 released missing genetic modification characterization ENCFF400FKO bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF562PEW, ENCFF700BKM, ENCFF931HWG 6736983 ENCODE Processing Pipeline 513e2047a5ec34c46cca53daa3030837 https://www.encodeproject.org/files/ENCFF400FKO/@@download/ENCFF400FKO.bed.gz GRCh38 released missing genetic modification characterization ENCFF253LPG bigBed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF400FKO 13123034 ENCODE Processing Pipeline d8bea45355a4542730115d5911492c79 https://www.encodeproject.org/files/ENCFF253LPG/@@download/ENCFF253LPG.bigBed GRCh38 released missing genetic modification characterization ENCFF752QBL bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF700BKM, ENCFF931HWG 5917778 ENCODE Processing Pipeline 31dcb882a4e018ea1b2224f147f0905a https://www.encodeproject.org/files/ENCFF752QBL/@@download/ENCFF752QBL.bed.gz GRCh38 released missing genetic modification characterization ENCFF323RGW bed narrowPeak optimal idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF400FKO, ENCFF410LYI, ENCFF419RSJ, ENCFF752QBL 225739 ENCODE Processing Pipeline c230989b1a11aa4663f27432d27e71aa https://www.encodeproject.org/files/ENCFF323RGW/@@download/ENCFF323RGW.bed.gz GRCh38 released missing genetic modification characterization ENCFF337QPO bigBed narrowPeak optimal idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF323RGW 438055 ENCODE Processing Pipeline 8672f922174b32df4301b8751923c01a https://www.encodeproject.org/files/ENCFF337QPO/@@download/ENCFF337QPO.bigBed GRCh38 released missing genetic modification characterization ENCFF465BGX bed narrowPeak conservative idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF400FKO, ENCFF410LYI, ENCFF419RSJ, ENCFF752QBL 190571 ENCODE Processing Pipeline a76f48885f2a412d34b5c7e223b2d4fd https://www.encodeproject.org/files/ENCFF465BGX/@@download/ENCFF465BGX.bed.gz GRCh38 released missing genetic modification characterization ENCFF152IVA bigBed narrowPeak conservative idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF465BGX 387939 ENCODE Processing Pipeline 9354b3ed2c8864835597dd577c7d61d5 https://www.encodeproject.org/files/ENCFF152IVA/@@download/ENCFF152IVA.bigBed GRCh38 released missing genetic modification characterization ENCFF869TGI bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF373VCV, ENCFF936MBZ 5921029 ENCODE Processing Pipeline 5368257bee17f7e891c75689b2cf46b8 https://www.encodeproject.org/files/ENCFF869TGI/@@download/ENCFF869TGI.bed.gz hg19 released missing genetic modification characterization ENCFF827LZB bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF124VCI, ENCFF373VCV, ENCFF936MBZ 6731420 ENCODE Processing Pipeline f7013f62747402c1c0cd7c4493d0be63 https://www.encodeproject.org/files/ENCFF827LZB/@@download/ENCFF827LZB.bed.gz hg19 released missing genetic modification characterization ENCFF411DIA bed narrowPeak optimal idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF827LZB, ENCFF869TGI, ENCFF963EUU 225811 ENCODE Processing Pipeline 43ce1eff00a6b8021cc73f72e80b62a5 https://www.encodeproject.org/files/ENCFF411DIA/@@download/ENCFF411DIA.bed.gz hg19 released missing genetic modification characterization ENCFF980QUR bigWig signal p-value ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF124VCI, ENCFF936MBZ 970523520 ENCODE Processing Pipeline fff0c4d96d211e735572c78f1d347e2a https://www.encodeproject.org/files/ENCFF980QUR/@@download/ENCFF980QUR.bigWig hg19 released missing genetic modification characterization ENCFF080SUU bigWig fold change over control ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF124VCI, ENCFF373VCV, ENCFF936MBZ 1495861483 ENCODE Processing Pipeline 9d2e43de4a6507d7b622313caf59b2e9 https://www.encodeproject.org/files/ENCFF080SUU/@@download/ENCFF080SUU.bigWig hg19 released missing genetic modification characterization ENCFF161OTR bigBed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF827LZB 13102845 ENCODE Processing Pipeline e4feb01c2927956a7a10428f1e152973 https://www.encodeproject.org/files/ENCFF161OTR/@@download/ENCFF161OTR.bigBed hg19 released missing genetic modification characterization ENCFF540SCI bigWig fold change over control ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF124VCI, ENCFF936MBZ 1023917989 ENCODE Processing Pipeline 06f5bac083a35cf0543468600152e5de https://www.encodeproject.org/files/ENCFF540SCI/@@download/ENCFF540SCI.bigWig hg19 released missing genetic modification characterization ENCFF511GKD bed narrowPeak conservative idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF827LZB, ENCFF869TGI, ENCFF963EUU 189282 ENCODE Processing Pipeline aea82ce28d87dadadcda001193b5001d https://www.encodeproject.org/files/ENCFF511GKD/@@download/ENCFF511GKD.bed.gz hg19 released missing genetic modification characterization ENCFF996RDA bigBed narrowPeak optimal idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF411DIA 434607 ENCODE Processing Pipeline e6dbd769c7eb8b11a9772fbdc403f68a https://www.encodeproject.org/files/ENCFF996RDA/@@download/ENCFF996RDA.bigBed hg19 released missing genetic modification characterization ENCFF918WJZ bigBed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF869TGI 11169486 ENCODE Processing Pipeline 2ac9816858220c48faf1e671b43ed51d https://www.encodeproject.org/files/ENCFF918WJZ/@@download/ENCFF918WJZ.bigBed hg19 released missing genetic modification characterization ENCFF030RAC bigBed narrowPeak conservative idr thresholded peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF511GKD 382995 ENCODE Processing Pipeline 3dcf7c576d30417cde6ffb1f178009b3 https://www.encodeproject.org/files/ENCFF030RAC/@@download/ENCFF030RAC.bigBed hg19 released missing genetic modification characterization ENCFF270CUI bigWig signal p-value ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF124VCI, ENCFF373VCV, ENCFF936MBZ 944641146 ENCODE Processing Pipeline 2f85a9c769e66db9b7b3572e770974a8 https://www.encodeproject.org/files/ENCFF270CUI/@@download/ENCFF270CUI.bigWig hg19 released missing genetic modification characterization ENCFF963EUU bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF124VCI, ENCFF936MBZ 5923434 ENCODE Processing Pipeline d068345d605435fcf94906b86ce05688 https://www.encodeproject.org/files/ENCFF963EUU/@@download/ENCFF963EUU.bed.gz hg19 released missing genetic modification characterization ENCFF217AQB bigBed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF963EUU 11200690 ENCODE Processing Pipeline 3f896eab6d3a4e7a141df6a9b6e0be51 https://www.encodeproject.org/files/ENCFF217AQB/@@download/ENCFF217AQB.bigBed hg19 released missing genetic modification characterization ENCFF201YVQ bam unfiltered alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF526NYU, ENCFF807MUK 936774233 ENCODE Processing Pipeline 7ce9c5504d42b8ed5d37270c1de56c6b https://www.encodeproject.org/files/ENCFF201YVQ/@@download/ENCFF201YVQ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF830KJF bam unfiltered alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF253ROA, ENCFF807MUK 1518278067 ENCODE Processing Pipeline c748612cdbc3032c45ffb70bc1e31029 https://www.encodeproject.org/files/ENCFF830KJF/@@download/ENCFF830KJF.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF526NYU fastq reads ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 821717038 Richard Myers, HAIB 3d1ec6cbcff12cfff941ed18ba9994ae SRA:SRR5339030 https://www.encodeproject.org/files/ENCFF526NYU/@@download/ENCFF526NYU.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF253ROA fastq reads ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1328930452 Richard Myers, HAIB c6fb963d2ea446b39f5115046cd28574 SRA:SRR5339031 https://www.encodeproject.org/files/ENCFF253ROA/@@download/ENCFF253ROA.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF232RDZ bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF526NYU, ENCFF807MUK 708606305 ENCODE Processing Pipeline a8801a4f86ee0491ca7f22c5ff3d827a https://www.encodeproject.org/files/ENCFF232RDZ/@@download/ENCFF232RDZ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF907MUS bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF253ROA, ENCFF807MUK 1153891348 ENCODE Processing Pipeline ab542e8c689b5b7df112acd2c3603594 https://www.encodeproject.org/files/ENCFF907MUS/@@download/ENCFF907MUS.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF990SCZ bigWig signal p-value ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF232RDZ 786005173 ENCODE Processing Pipeline 508dfe754a397b6da35f33561b27f984 https://www.encodeproject.org/files/ENCFF990SCZ/@@download/ENCFF990SCZ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF731VSK bigWig signal p-value ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF907MUS 779647413 ENCODE Processing Pipeline b79e594b2529cc697952ccfb0fe79e2a https://www.encodeproject.org/files/ENCFF731VSK/@@download/ENCFF731VSK.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF218GXY bigWig signal p-value ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF232RDZ, ENCFF907MUS 874640687 ENCODE Processing Pipeline 1b9fc0f3616bf0596bceeeb94367bcd1 https://www.encodeproject.org/files/ENCFF218GXY/@@download/ENCFF218GXY.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF916PYQ bigWig fold change over control ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF907MUS 662302222 ENCODE Processing Pipeline 7a560024b079bdb59b0fc486610607bb https://www.encodeproject.org/files/ENCFF916PYQ/@@download/ENCFF916PYQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF203KTC bigWig fold change over control ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF232RDZ 532405781 ENCODE Processing Pipeline 23d3fb0b921e670afdf8a41f77e0e0f4 https://www.encodeproject.org/files/ENCFF203KTC/@@download/ENCFF203KTC.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF021SXQ bigWig fold change over control ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF232RDZ, ENCFF907MUS 963354845 ENCODE Processing Pipeline f9d15936d35339c8893d6a99a4cef2cf https://www.encodeproject.org/files/ENCFF021SXQ/@@download/ENCFF021SXQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF590NKV bigBed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF597QZY 11630107 ENCODE Processing Pipeline 0ba46d45111c61a830d5e44a572fc09f https://www.encodeproject.org/files/ENCFF590NKV/@@download/ENCFF590NKV.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF597QZY bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF232RDZ, ENCFF907MUS 5919643 ENCODE Processing Pipeline 5663b0730a149ef14f905bc402ced55b https://www.encodeproject.org/files/ENCFF597QZY/@@download/ENCFF597QZY.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF003PSH bed narrowPeak conservative idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF539OHR, ENCFF597QZY, ENCFF906WAQ 70177 ENCODE Processing Pipeline fe52b915cd3c6bdc7a54add5484f1b6d https://www.encodeproject.org/files/ENCFF003PSH/@@download/ENCFF003PSH.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF624QDF bigBed narrowPeak conservative idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF003PSH 183011 ENCODE Processing Pipeline aa7a849ea6e2fea96cc2e8b6e4a2ac66 https://www.encodeproject.org/files/ENCFF624QDF/@@download/ENCFF624QDF.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF078CQD bigBed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF539OHR 11224782 ENCODE Processing Pipeline dea4595092b14ad79128eaf94c074962 https://www.encodeproject.org/files/ENCFF078CQD/@@download/ENCFF078CQD.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF460HOI bigBed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF906WAQ 11037671 ENCODE Processing Pipeline 8329e05c9de35087a07213d4f1740513 https://www.encodeproject.org/files/ENCFF460HOI/@@download/ENCFF460HOI.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF269EMM bed narrowPeak optimal idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF539OHR, ENCFF597QZY, ENCFF906WAQ 71060 ENCODE Processing Pipeline af53a063019d668f2053979d501052f0 https://www.encodeproject.org/files/ENCFF269EMM/@@download/ENCFF269EMM.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF165YNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF269EMM 184353 ENCODE Processing Pipeline 8cb1b38390ceebb13e40a29d9fe3f1a7 https://www.encodeproject.org/files/ENCFF165YNJ/@@download/ENCFF165YNJ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF539OHR bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF907MUS 5029003 ENCODE Processing Pipeline 139796eb1ef6b10e47dd7dcd30db30a3 https://www.encodeproject.org/files/ENCFF539OHR/@@download/ENCFF539OHR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF906WAQ bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF232RDZ 4866259 ENCODE Processing Pipeline 08d4a0372abef1262df64685abf4d357 https://www.encodeproject.org/files/ENCFF906WAQ/@@download/ENCFF906WAQ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF072SKI bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF526NYU, ENCFF643CGH 708343934 ENCODE Processing Pipeline 4bade86559c4d07e006fc300cd46f8f4 https://www.encodeproject.org/files/ENCFF072SKI/@@download/ENCFF072SKI.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF100EJJ bam unfiltered alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF526NYU, ENCFF643CGH 940436271 ENCODE Processing Pipeline e8c0bcb0b3fbbb982fd1859945a3682a https://www.encodeproject.org/files/ENCFF100EJJ/@@download/ENCFF100EJJ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF933PZQ bam unfiltered alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF253ROA, ENCFF643CGH 1524171628 ENCODE Processing Pipeline 7aa02943d9d5b3a9dc4a11ffc4da18d8 https://www.encodeproject.org/files/ENCFF933PZQ/@@download/ENCFF933PZQ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF030XLK bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF253ROA, ENCFF643CGH 1153689566 ENCODE Processing Pipeline af8caa2694858009872092e34b9e23c8 https://www.encodeproject.org/files/ENCFF030XLK/@@download/ENCFF030XLK.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF256VOX bigWig signal p-value ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF030XLK, ENCFF332SVJ 865119991 ENCODE Processing Pipeline 0cf1882dc05bb45d6f0167bb1107639d https://www.encodeproject.org/files/ENCFF256VOX/@@download/ENCFF256VOX.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF923GZG bigWig signal p-value ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF072SKI, ENCFF332SVJ 826378777 ENCODE Processing Pipeline c0a57ee59eb8dd3c623562acf450c7e0 https://www.encodeproject.org/files/ENCFF923GZG/@@download/ENCFF923GZG.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF848NVR bigWig signal p-value ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF030XLK, ENCFF072SKI, ENCFF332SVJ 1026327441 ENCODE Processing Pipeline 85ea7855f034f8ae16e727da759f6ef4 https://www.encodeproject.org/files/ENCFF848NVR/@@download/ENCFF848NVR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF838JMR bigWig fold change over control ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF030XLK, ENCFF332SVJ 696890026 ENCODE Processing Pipeline e47a68c8c3e4302a9cbaa89319a6ed3b https://www.encodeproject.org/files/ENCFF838JMR/@@download/ENCFF838JMR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF364TGB bigWig fold change over control ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF072SKI, ENCFF332SVJ 530123314 ENCODE Processing Pipeline dddd4248670ec1f6d933a22682bd647e https://www.encodeproject.org/files/ENCFF364TGB/@@download/ENCFF364TGB.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF255VXF bigWig fold change over control ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF030XLK, ENCFF072SKI, ENCFF332SVJ 981924076 ENCODE Processing Pipeline 37ceaa27d9b24bdff803c2b6b90733b0 https://www.encodeproject.org/files/ENCFF255VXF/@@download/ENCFF255VXF.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF428CPW bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF030XLK, ENCFF332SVJ 4789332 ENCODE Processing Pipeline ac6bfa830672a3c48296508dab15ad48 https://www.encodeproject.org/files/ENCFF428CPW/@@download/ENCFF428CPW.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF479NRZ bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF030XLK, ENCFF072SKI, ENCFF332SVJ 5559162 ENCODE Processing Pipeline 1fe0e3b2fa1fbd6d5f49583c1e94b74d https://www.encodeproject.org/files/ENCFF479NRZ/@@download/ENCFF479NRZ.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF743XUM bigBed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF428CPW 11116391 ENCODE Processing Pipeline 040d4de0b3147c8ab92032049d3be3f1 https://www.encodeproject.org/files/ENCFF743XUM/@@download/ENCFF743XUM.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF603XZJ bigBed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF479NRZ 11626495 ENCODE Processing Pipeline ecdfd614829af32f2c281878f6ea44e9 https://www.encodeproject.org/files/ENCFF603XZJ/@@download/ENCFF603XZJ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF958UWK bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF072SKI, ENCFF332SVJ 4569141 ENCODE Processing Pipeline 5833361a90c90b9a365f6a3de284a994 https://www.encodeproject.org/files/ENCFF958UWK/@@download/ENCFF958UWK.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF648NTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF925OBR 187356 ENCODE Processing Pipeline 391a1c7279f2d380f1d8614424d1f06f https://www.encodeproject.org/files/ENCFF648NTJ/@@download/ENCFF648NTJ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF233ENP bigBed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF958UWK 10917607 ENCODE Processing Pipeline 382837f9da03d6ba59538e2d03555c69 https://www.encodeproject.org/files/ENCFF233ENP/@@download/ENCFF233ENP.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF270VUX bed narrowPeak conservative idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF428CPW, ENCFF479NRZ, ENCFF958UWK 70616 ENCODE Processing Pipeline d2e6b29ef9a1a8ee426483e95978a335 https://www.encodeproject.org/files/ENCFF270VUX/@@download/ENCFF270VUX.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF185OAW bigBed narrowPeak conservative idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF270VUX 185774 ENCODE Processing Pipeline 0f19fbfcae4d92b256f10076fa8ca2e6 https://www.encodeproject.org/files/ENCFF185OAW/@@download/ENCFF185OAW.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF925OBR bed narrowPeak optimal idr thresholded peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF428CPW, ENCFF479NRZ, ENCFF958UWK 71594 ENCODE Processing Pipeline a192e09fb75616923efec4f248adf041 https://www.encodeproject.org/files/ENCFF925OBR/@@download/ENCFF925OBR.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF981LZA fastq reads ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF448IBU 2502669141 Michael Snyder, Stanford 82edfd9e6829661bad0a540c5591a13c SRA:SRR6214419 https://www.encodeproject.org/files/ENCFF981LZA/@@download/ENCFF981LZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF409WTS/ released antibody characterized with exemption ENCFF448IBU fastq reads ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF981LZA 2480510249 Michael Snyder, Stanford 398cf4c2a8088ccf1bc5d936510c4f4d SRA:SRR6214419 https://www.encodeproject.org/files/ENCFF448IBU/@@download/ENCFF448IBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF757YZF/ released antibody characterized with exemption ENCFF426FFH bam unfiltered alignments ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF448IBU, ENCFF807MUK, ENCFF981LZA 5320078900 ENCODE Processing Pipeline 8bdb19ed81081974e0338ac357e28b06 https://www.encodeproject.org/files/ENCFF426FFH/@@download/ENCFF426FFH.bam hg19 released antibody characterized with exemption ENCFF282SQP bam alignments ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF448IBU, ENCFF807MUK, ENCFF981LZA 4264437418 ENCODE Processing Pipeline 163470679e47eb6803dde3f75e979917 https://www.encodeproject.org/files/ENCFF282SQP/@@download/ENCFF282SQP.bam hg19 released antibody characterized with exemption ENCFF365NOY bam unfiltered alignments ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF448IBU, ENCFF643CGH, ENCFF981LZA 5324031163 ENCODE Processing Pipeline fa18c06021faf012167052c2875e6725 https://www.encodeproject.org/files/ENCFF365NOY/@@download/ENCFF365NOY.bam GRCh38 released antibody characterized with exemption ENCFF069JAM bam alignments ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF448IBU, ENCFF643CGH, ENCFF981LZA 4269617818 ENCODE Processing Pipeline f5dd38b1b0decd66ac9605ac80e0e79d https://www.encodeproject.org/files/ENCFF069JAM/@@download/ENCFF069JAM.bam GRCh38 released antibody characterized with exemption ENCFF076SND bigWig signal p-value ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF282SQP, ENCFF745BKE 980018398 ENCODE Processing Pipeline df86e7dbb0d4d54da05e80198f4ae7f7 https://www.encodeproject.org/files/ENCFF076SND/@@download/ENCFF076SND.bigWig hg19 released antibody characterized with exemption ENCFF779QTR bed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF282SQP, ENCFF745BKE 6480153 ENCODE Processing Pipeline 439031ea4ee45d2a7377621e80087599 https://www.encodeproject.org/files/ENCFF779QTR/@@download/ENCFF779QTR.bed.gz hg19 released antibody characterized with exemption ENCFF494SYI bigBed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF779QTR 13882943 ENCODE Processing Pipeline 0a49d2faed0f6f3f7e455b3ddff5713b https://www.encodeproject.org/files/ENCFF494SYI/@@download/ENCFF494SYI.bigBed hg19 released antibody characterized with exemption ENCFF567ZNZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF622LJD 1160429 ENCODE Processing Pipeline 542d0bc797f3494d92292dc979ae990b https://www.encodeproject.org/files/ENCFF567ZNZ/@@download/ENCFF567ZNZ.bigBed hg19 released antibody characterized with exemption ENCFF006LTS bigWig fold change over control ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF282SQP, ENCFF745BKE 988516272 ENCODE Processing Pipeline cab66c31e81607e0261427c7e55e4520 https://www.encodeproject.org/files/ENCFF006LTS/@@download/ENCFF006LTS.bigWig hg19 released antibody characterized with exemption ENCFF622LJD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF779QTR 665695 ENCODE Processing Pipeline daea7f8fce240eb4f1d04843574efc65 https://www.encodeproject.org/files/ENCFF622LJD/@@download/ENCFF622LJD.bed.gz hg19 released antibody characterized with exemption ENCFF405PIU bigWig signal p-value ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF069JAM, ENCFF838GUO 924852132 ENCODE Processing Pipeline a2c828971dc403a93da71c7dd1624a9f https://www.encodeproject.org/files/ENCFF405PIU/@@download/ENCFF405PIU.bigWig GRCh38 released antibody characterized with exemption ENCFF144BNN bigBed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF636RLY 13884083 ENCODE Processing Pipeline 3266b5d20f93333c41cb4d45d179ef4e https://www.encodeproject.org/files/ENCFF144BNN/@@download/ENCFF144BNN.bigBed GRCh38 released antibody characterized with exemption ENCFF412TMX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF636RLY 664490 ENCODE Processing Pipeline 6cd443439225358a47a29908bd08f39a https://www.encodeproject.org/files/ENCFF412TMX/@@download/ENCFF412TMX.bed.gz GRCh38 released antibody characterized with exemption ENCFF636RLY bed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF069JAM, ENCFF838GUO 6472204 ENCODE Processing Pipeline 2d2fa18ba58453ec8ba341eedfdeb45d https://www.encodeproject.org/files/ENCFF636RLY/@@download/ENCFF636RLY.bed.gz GRCh38 released antibody characterized with exemption ENCFF532QGW bigWig fold change over control ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF069JAM, ENCFF838GUO 970393300 ENCODE Processing Pipeline 892d65fb53b57a1b0967e78856da470a https://www.encodeproject.org/files/ENCFF532QGW/@@download/ENCFF532QGW.bigWig GRCh38 released antibody characterized with exemption ENCFF123DVC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF412TMX 1162112 ENCODE Processing Pipeline e6218f8a012e414aaf154e834c56fdb3 https://www.encodeproject.org/files/ENCFF123DVC/@@download/ENCFF123DVC.bigBed GRCh38 released antibody characterized with exemption ENCFF574HXK fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF997CNG 2966153565 Michael Snyder, Stanford 6a06f7c5cd2a3d007281bc651582a7ab SRA:SRR6214004 https://www.encodeproject.org/files/ENCFF574HXK/@@download/ENCFF574HXK.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF393WEP fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF364TAC 10703684588 Michael Snyder, Stanford 00c8ead9796cfc312093f272beb8c3ab SRA:SRR6214003 https://www.encodeproject.org/files/ENCFF393WEP/@@download/ENCFF393WEP.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF364TAC fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF393WEP 9706621516 Michael Snyder, Stanford ba535bdf91fc237d0fd588b16436b8ad SRA:SRR6214003 https://www.encodeproject.org/files/ENCFF364TAC/@@download/ENCFF364TAC.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF997CNG fastq reads ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF574HXK 2770651140 Michael Snyder, Stanford 521a0238c23a7e57cf63a0d58362c1f0 SRA:SRR6214004 https://www.encodeproject.org/files/ENCFF997CNG/@@download/ENCFF997CNG.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF669BBE bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF643CGH, ENCFF997CNG 5616182539 ENCODE Processing Pipeline 561169504f71a6e1202a023c851a08c9 https://www.encodeproject.org/files/ENCFF669BBE/@@download/ENCFF669BBE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF143HZI bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF807MUK, ENCFF997CNG 5609774869 ENCODE Processing Pipeline 5fb14378dea84b53a0403bd60677757f https://www.encodeproject.org/files/ENCFF143HZI/@@download/ENCFF143HZI.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF125XMV bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF643CGH, ENCFF997CNG 4625664645 ENCODE Processing Pipeline 2e467893318bd737504f24fb931be556 https://www.encodeproject.org/files/ENCFF125XMV/@@download/ENCFF125XMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF170QWA bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF807MUK, ENCFF997CNG 4616663173 ENCODE Processing Pipeline 236dfb01a7419459a8377ccb76194abd https://www.encodeproject.org/files/ENCFF170QWA/@@download/ENCFF170QWA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF772KBH bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF807MUK 17551856651 ENCODE Processing Pipeline 0faf26a028b2104b598cb481d3bd37b2 https://www.encodeproject.org/files/ENCFF772KBH/@@download/ENCFF772KBH.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF843IFG bam unfiltered alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF643CGH 17549410945 ENCODE Processing Pipeline 6670cfb65c7ef7b18ebd6b1c40a0f57d https://www.encodeproject.org/files/ENCFF843IFG/@@download/ENCFF843IFG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF201IJO bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF807MUK 10117411036 ENCODE Processing Pipeline 05aa35d552cdf7d91ef33ddcfa810892 https://www.encodeproject.org/files/ENCFF201IJO/@@download/ENCFF201IJO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF673WGB bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF643CGH 10141771274 ENCODE Processing Pipeline aadfcc6c7f220fa226e753025676bb0e https://www.encodeproject.org/files/ENCFF673WGB/@@download/ENCFF673WGB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF445BQP bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR 1731263943 ENCODE Processing Pipeline 9968892b9c273421a84c7ed8aaeeea87 https://www.encodeproject.org/files/ENCFF445BQP/@@download/ENCFF445BQP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF841VKX bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF322NTO, ENCFF673WGB 1415635572 ENCODE Processing Pipeline 140cea640a9b25eef4b75dbb28cd7279 https://www.encodeproject.org/files/ENCFF841VKX/@@download/ENCFF841VKX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF285PEI bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR, ENCFF673WGB 2356673772 ENCODE Processing Pipeline 8b1a7da1e4c26a2f4a8a03d0163e027d https://www.encodeproject.org/files/ENCFF285PEI/@@download/ENCFF285PEI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF177ZOK bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR 1833709955 ENCODE Processing Pipeline 2e63aeb7e57a6721c8a6ad34c4816e62 https://www.encodeproject.org/files/ENCFF177ZOK/@@download/ENCFF177ZOK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF325EYN bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF322NTO, ENCFF673WGB 2232153364 ENCODE Processing Pipeline 38539a1d2de6edffce788708566781ed https://www.encodeproject.org/files/ENCFF325EYN/@@download/ENCFF325EYN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF614WVD bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR, ENCFF673WGB 4227232754 ENCODE Processing Pipeline c25a7c2ccab7f7a7f245c8cdffde3ab8 https://www.encodeproject.org/files/ENCFF614WVD/@@download/ENCFF614WVD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF051TIF bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR 7062450 ENCODE Processing Pipeline 26e4a6ff82473d0dadb19b73c1e7630d https://www.encodeproject.org/files/ENCFF051TIF/@@download/ENCFF051TIF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF709QYA bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF322NTO, ENCFF673WGB 7405219 ENCODE Processing Pipeline 3461cf86ddf87102f93c7e8dde2d45ae https://www.encodeproject.org/files/ENCFF709QYA/@@download/ENCFF709QYA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF521MOQ bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF125XMV, ENCFF322NTO, ENCFF666ATR, ENCFF673WGB 7395184 ENCODE Processing Pipeline 1ebec1f600f12af9de9ed39cdbed390a https://www.encodeproject.org/files/ENCFF521MOQ/@@download/ENCFF521MOQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF904BAQ bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF051TIF 13029672 ENCODE Processing Pipeline 59322637171dc7855914f7053293f6d8 https://www.encodeproject.org/files/ENCFF904BAQ/@@download/ENCFF904BAQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF300ONT bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF709QYA 13271719 ENCODE Processing Pipeline a061f95cb45036fc125c7fcd62b56f7d https://www.encodeproject.org/files/ENCFF300ONT/@@download/ENCFF300ONT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF358FOS bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF521MOQ 13231575 ENCODE Processing Pipeline 7ebb1df6ec6eb95edd94ab55f30f7e01 https://www.encodeproject.org/files/ENCFF358FOS/@@download/ENCFF358FOS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF127UTH bed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051TIF, ENCFF419RSJ, ENCFF521MOQ, ENCFF709QYA 721522 ENCODE Processing Pipeline 2fe153ffd707a1ed10cacf9cda22781a https://www.encodeproject.org/files/ENCFF127UTH/@@download/ENCFF127UTH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF176GUV bigBed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF127UTH 1597781 ENCODE Processing Pipeline 8acbda001505699e6caef7a4f1c6e426 https://www.encodeproject.org/files/ENCFF176GUV/@@download/ENCFF176GUV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF088OLI bed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF051TIF, ENCFF419RSJ, ENCFF521MOQ, ENCFF709QYA 977890 ENCODE Processing Pipeline 48aaa7925c53fa72dd9d5aa7f287f429 https://www.encodeproject.org/files/ENCFF088OLI/@@download/ENCFF088OLI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF762AZY bigBed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF088OLI 2053909 ENCODE Processing Pipeline c41b2a6243be9c878b03003a730d449a https://www.encodeproject.org/files/ENCFF762AZY/@@download/ENCFF762AZY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF015LAS bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF170QWA, ENCFF201IJO, ENCFF592WAL, ENCFF901CND 7316173 ENCODE Processing Pipeline 8c6f4b18382e89e40b904d11de6d5975 https://www.encodeproject.org/files/ENCFF015LAS/@@download/ENCFF015LAS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF983QJN bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF121LDE 13261631 ENCODE Processing Pipeline 42c7510a3677f87a38e2923fe1deb0fc https://www.encodeproject.org/files/ENCFF983QJN/@@download/ENCFF983QJN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF325SVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF653MIQ 2011614 ENCODE Processing Pipeline 007b5e774be2a501ba17d415011eb632 https://www.encodeproject.org/files/ENCFF325SVJ/@@download/ENCFF325SVJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF489GBB bed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF015LAS, ENCFF121LDE, ENCFF658QMA 697788 ENCODE Processing Pipeline ab9e42a12785cb026b7005d3c593bef2 https://www.encodeproject.org/files/ENCFF489GBB/@@download/ENCFF489GBB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF983GKW bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 1848425647 ENCODE Processing Pipeline 692d9992cfb74806906ac28beb24ce63 https://www.encodeproject.org/files/ENCFF983GKW/@@download/ENCFF983GKW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF658QMA bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 7059027 ENCODE Processing Pipeline 388cc423bf31f1db19df68636bb8fb5e https://www.encodeproject.org/files/ENCFF658QMA/@@download/ENCFF658QMA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF912JSW bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF015LAS 13136256 ENCODE Processing Pipeline 2c46b71e213fafc644258939f9b00074 https://www.encodeproject.org/files/ENCFF912JSW/@@download/ENCFF912JSW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF448CPD bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF170QWA, ENCFF201IJO, ENCFF592WAL, ENCFF901CND 2317115625 ENCODE Processing Pipeline 5e0de95426ca8556d0f56aff10fbcb13 https://www.encodeproject.org/files/ENCFF448CPD/@@download/ENCFF448CPD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF942IMP bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF170QWA, ENCFF201IJO, ENCFF592WAL, ENCFF901CND 4172110183 ENCODE Processing Pipeline 55a5bb30f07f478d3f1174b3e0e09120 https://www.encodeproject.org/files/ENCFF942IMP/@@download/ENCFF942IMP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF205UJI bigBed narrowPeak conservative idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF489GBB 1561292 ENCODE Processing Pipeline 6efbd254e94d82f7eb6a2ba8b75c64f0 https://www.encodeproject.org/files/ENCFF205UJI/@@download/ENCFF205UJI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF121LDE bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 7399387 ENCODE Processing Pipeline 9592a949848414b2593e1a787435abe9 https://www.encodeproject.org/files/ENCFF121LDE/@@download/ENCFF121LDE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF505ZUY bigBed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF658QMA 13025781 ENCODE Processing Pipeline 92d75b259caf5a37c8219503fc7d4e2b https://www.encodeproject.org/files/ENCFF505ZUY/@@download/ENCFF505ZUY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF653MIQ bed narrowPeak optimal idr thresholded peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF015LAS, ENCFF121LDE, ENCFF658QMA 951360 ENCODE Processing Pipeline 1f78aaf05fbfc895c4ff5d21f048885f https://www.encodeproject.org/files/ENCFF653MIQ/@@download/ENCFF653MIQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF129JYL bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 1715714145 ENCODE Processing Pipeline 0ce8cbf7816e785f8c6ca188cc9488e7 https://www.encodeproject.org/files/ENCFF129JYL/@@download/ENCFF129JYL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF086OWH bigWig signal p-value ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 1427446901 ENCODE Processing Pipeline 028626c705ce10bde229b05f61187d91 https://www.encodeproject.org/files/ENCFF086OWH/@@download/ENCFF086OWH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF990ZVT bigWig fold change over control ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 2239133652 ENCODE Processing Pipeline 4b14589c396577f3e5832f384fb174b1 https://www.encodeproject.org/files/ENCFF990ZVT/@@download/ENCFF990ZVT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF746BEA fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF096BNX 5668882188 Michael Snyder, Stanford fd2e04e291512b864560ea066a7f3711 https://www.encodeproject.org/files/ENCFF746BEA/@@download/ENCFF746BEA.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF096BNX fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF746BEA 5121257734 Michael Snyder, Stanford 3d4469bb4337e82ebaa7953cbb069b98 https://www.encodeproject.org/files/ENCFF096BNX/@@download/ENCFF096BNX.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF423CLL fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF920YLL 4604696312 Michael Snyder, Stanford 7832d9aef024b0e28d9915b0204d0831 https://www.encodeproject.org/files/ENCFF423CLL/@@download/ENCFF423CLL.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF920YLL fastq reads ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF423CLL 4623870042 Michael Snyder, Stanford 80061463c2b4187ef78faa4d1ab68a45 https://www.encodeproject.org/files/ENCFF920YLL/@@download/ENCFF920YLL.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF767EYL bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF807MUK, ENCFF920YLL 8598637093 ENCODE Processing Pipeline 6625c23436d714e2c18aa762e13ca8df https://www.encodeproject.org/files/ENCFF767EYL/@@download/ENCFF767EYL.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF951GLQ bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF643CGH, ENCFF920YLL 8599046000 ENCODE Processing Pipeline 932ea3c7828ca7448d95d6136561381d https://www.encodeproject.org/files/ENCFF951GLQ/@@download/ENCFF951GLQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF207TPA bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF643CGH, ENCFF746BEA 9044049688 ENCODE Processing Pipeline 21b1d3a80fa0060d651f01eb2df26506 https://www.encodeproject.org/files/ENCFF207TPA/@@download/ENCFF207TPA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF387RFR bam unfiltered alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF746BEA, ENCFF807MUK 9066926286 ENCODE Processing Pipeline a7f029fcd71cf4ce7f491734d8ce9475 https://www.encodeproject.org/files/ENCFF387RFR/@@download/ENCFF387RFR.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF245PXJ bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF807MUK, ENCFF920YLL 3913336857 ENCODE Processing Pipeline 6f9ef5e1f83e7aac1ff45585bcac86e8 https://www.encodeproject.org/files/ENCFF245PXJ/@@download/ENCFF245PXJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF018ITN bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF643CGH, ENCFF920YLL 3922535427 ENCODE Processing Pipeline 370aca14dcbd55c3ed75cba26d533063 https://www.encodeproject.org/files/ENCFF018ITN/@@download/ENCFF018ITN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF560TMS bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF643CGH, ENCFF746BEA 4876341558 ENCODE Processing Pipeline fa62ee1c6dfe09107f27a9d3744c1c47 https://www.encodeproject.org/files/ENCFF560TMS/@@download/ENCFF560TMS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF683DXC bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF746BEA, ENCFF807MUK 4844006387 ENCODE Processing Pipeline 0cda1dff0e7d7b5ab1f3281a1b7aecde https://www.encodeproject.org/files/ENCFF683DXC/@@download/ENCFF683DXC.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF364BED bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 1099671367 ENCODE Processing Pipeline a7add35bc2b58286933f027b3c604303 https://www.encodeproject.org/files/ENCFF364BED/@@download/ENCFF364BED.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF263OTK bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 1710537429 ENCODE Processing Pipeline d7382c13d3c947ffeb1e6d962e383931 https://www.encodeproject.org/files/ENCFF263OTK/@@download/ENCFF263OTK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF663OWL bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245PXJ, ENCFF592WAL, ENCFF683DXC, ENCFF901CND 1933442140 ENCODE Processing Pipeline 56829e9f259f4d6a7c50d31d3061c312 https://www.encodeproject.org/files/ENCFF663OWL/@@download/ENCFF663OWL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF736HYF bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 1204413692 ENCODE Processing Pipeline fe9ed24a163d6efffc594698c604162e https://www.encodeproject.org/files/ENCFF736HYF/@@download/ENCFF736HYF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF027GXL bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 1946649099 ENCODE Processing Pipeline c51ffa2475bf2a2c531594e51d770640 https://www.encodeproject.org/files/ENCFF027GXL/@@download/ENCFF027GXL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF158HLI bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245PXJ, ENCFF592WAL, ENCFF683DXC, ENCFF901CND 2423352334 ENCODE Processing Pipeline 57a7aee24f731c699184f63e4f964458 https://www.encodeproject.org/files/ENCFF158HLI/@@download/ENCFF158HLI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF172UOB bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 6178196 ENCODE Processing Pipeline 4426a4ea966e640b31b13fc2e2836553 https://www.encodeproject.org/files/ENCFF172UOB/@@download/ENCFF172UOB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF467WTS bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245PXJ, ENCFF592WAL, ENCFF683DXC, ENCFF901CND 7321391 ENCODE Processing Pipeline 97a94f5dbe76c1dafdac0bb5948975f9 https://www.encodeproject.org/files/ENCFF467WTS/@@download/ENCFF467WTS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF500GHH bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 6986623 ENCODE Processing Pipeline c85d20f14641924408142531cfafdd20 https://www.encodeproject.org/files/ENCFF500GHH/@@download/ENCFF500GHH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF469SDP bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF172UOB 11326514 ENCODE Processing Pipeline 5e3d11932c2efc1f88e4d3653781e08b https://www.encodeproject.org/files/ENCFF469SDP/@@download/ENCFF469SDP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF748SFF bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF500GHH 11396961 ENCODE Processing Pipeline 99b8cdb52faf1eb45e292066a71ea292 https://www.encodeproject.org/files/ENCFF748SFF/@@download/ENCFF748SFF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF059TGS bigBed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF069KRU 571605 ENCODE Processing Pipeline 2e33234744e43da1304c5340046edb2b https://www.encodeproject.org/files/ENCFF059TGS/@@download/ENCFF059TGS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF646RMP bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF467WTS 11482131 ENCODE Processing Pipeline 6a25dda8c161a23d30abc9d4eb5ea4a0 https://www.encodeproject.org/files/ENCFF646RMP/@@download/ENCFF646RMP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF069KRU bed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF172UOB, ENCFF467WTS, ENCFF500GHH 283536 ENCODE Processing Pipeline 3ad6115fc98005ed4657fd0e2db1d73f https://www.encodeproject.org/files/ENCFF069KRU/@@download/ENCFF069KRU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF909FRA bed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF172UOB, ENCFF467WTS, ENCFF500GHH 355186 ENCODE Processing Pipeline 61fffb75b6f30e6189a0319942b70dab https://www.encodeproject.org/files/ENCFF909FRA/@@download/ENCFF909FRA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF829XQW bigBed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF909FRA 672937 ENCODE Processing Pipeline ef44ab90bd76f91cfde8e9eefcd64a9d https://www.encodeproject.org/files/ENCFF829XQW/@@download/ENCFF829XQW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF065HFA bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF018ITN, ENCFF322NTO 1223405899 ENCODE Processing Pipeline 1b8b8592eaaf81e9ac87f4452ff37b2a https://www.encodeproject.org/files/ENCFF065HFA/@@download/ENCFF065HFA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF395DWL bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 1790993946 ENCODE Processing Pipeline c76d444320aa821c377876ac23e8e0a3 https://www.encodeproject.org/files/ENCFF395DWL/@@download/ENCFF395DWL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF766UCI bigWig signal p-value ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF018ITN, ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 1855229779 ENCODE Processing Pipeline c560177c0b38af78ea8071c67911a15a https://www.encodeproject.org/files/ENCFF766UCI/@@download/ENCFF766UCI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF167UMY bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF018ITN, ENCFF322NTO 1200455696 ENCODE Processing Pipeline ad4a526e86efe8ac31a3794104dbc189 https://www.encodeproject.org/files/ENCFF167UMY/@@download/ENCFF167UMY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF348IWB bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 1984640854 ENCODE Processing Pipeline 48d27e8320adf17de4dbfe381f13bddd https://www.encodeproject.org/files/ENCFF348IWB/@@download/ENCFF348IWB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF569CSW bigWig fold change over control ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF018ITN, ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 2426650348 ENCODE Processing Pipeline dfe0f13c108fb93b2ed1f04576b9545b https://www.encodeproject.org/files/ENCFF569CSW/@@download/ENCFF569CSW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF116RPQ bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 6942901 ENCODE Processing Pipeline ccb069f27ef165c3bd152a710f3dea4d https://www.encodeproject.org/files/ENCFF116RPQ/@@download/ENCFF116RPQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF021GHV bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF116RPQ 11385890 ENCODE Processing Pipeline 8b662456da9673ffcb625dc1b260bcd2 https://www.encodeproject.org/files/ENCFF021GHV/@@download/ENCFF021GHV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF439JXH bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF800IJR 11306831 ENCODE Processing Pipeline 4220b1cee23702f64630bbf2199f48c9 https://www.encodeproject.org/files/ENCFF439JXH/@@download/ENCFF439JXH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF654JXR bed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF116RPQ, ENCFF419RSJ, ENCFF596JYU, ENCFF800IJR 294331 ENCODE Processing Pipeline 0b6dffd6bab421678cff136b350909ac https://www.encodeproject.org/files/ENCFF654JXR/@@download/ENCFF654JXR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF154RXM bigBed narrowPeak conservative idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF654JXR 551713 ENCODE Processing Pipeline 2cdbc2b07dcc8c3eea063a93bccb01ab https://www.encodeproject.org/files/ENCFF154RXM/@@download/ENCFF154RXM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF323KAA bigBed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF766WWB 804371 ENCODE Processing Pipeline 8a9e45363e70c8bb7a92437d73dc5b15 https://www.encodeproject.org/files/ENCFF323KAA/@@download/ENCFF323KAA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF596JYU bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF018ITN, ENCFF322NTO, ENCFF560TMS, ENCFF666ATR 7305883 ENCODE Processing Pipeline 1a85f71ab72d1c6c6e0859485ca10b6c https://www.encodeproject.org/files/ENCFF596JYU/@@download/ENCFF596JYU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF240WOE bigBed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF596JYU 11459628 ENCODE Processing Pipeline ff7c896e70037f7e239335f9c3a4676d https://www.encodeproject.org/files/ENCFF240WOE/@@download/ENCFF240WOE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF766WWB bed narrowPeak optimal idr thresholded peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF116RPQ, ENCFF419RSJ, ENCFF596JYU, ENCFF800IJR 363257 ENCODE Processing Pipeline 35a0e07587872dbbb364026f767616bb https://www.encodeproject.org/files/ENCFF766WWB/@@download/ENCFF766WWB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF800IJR bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF018ITN, ENCFF322NTO 5993007 ENCODE Processing Pipeline 30d09d48654f15d7a6df43ea684bc590 https://www.encodeproject.org/files/ENCFF800IJR/@@download/ENCFF800IJR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF401ZXJ bam unfiltered alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 100 ENCFF328DHW, ENCFF370TGN, ENCFF807MUK 2735662603 ENCODE Processing Pipeline c7a32e25f0bcf374788c4ca37b40c6b5 https://www.encodeproject.org/files/ENCFF401ZXJ/@@download/ENCFF401ZXJ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF343WUW bam unfiltered alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165TPB, ENCFF186WPX, ENCFF807MUK 3563187013 ENCODE Processing Pipeline 787c1610448f95eaa46509728c7572d7 https://www.encodeproject.org/files/ENCFF343WUW/@@download/ENCFF343WUW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF370TGN fastq reads ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF328DHW 1222455235 Michael Snyder, Stanford 24e96f4f7990c80352b6afd8f90eef97 SRA:SRR5111468 https://www.encodeproject.org/files/ENCFF370TGN/@@download/ENCFF370TGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF186WPX fastq reads ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF165TPB 1589939113 Michael Snyder, Stanford 08879882ead8c78c8f0518a243f9740d SRA:SRR5111469 https://www.encodeproject.org/files/ENCFF186WPX/@@download/ENCFF186WPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF165TPB fastq reads ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF186WPX 1607638431 Michael Snyder, Stanford 29953552314c8e187a6c1c6451de129d SRA:SRR5111469 https://www.encodeproject.org/files/ENCFF165TPB/@@download/ENCFF165TPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF328DHW fastq reads ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF370TGN 1237487415 Michael Snyder, Stanford 9f49c130d74f0917031448f30efa0d5a SRA:SRR5111468 https://www.encodeproject.org/files/ENCFF328DHW/@@download/ENCFF328DHW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF175TNH bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 100 ENCFF328DHW, ENCFF370TGN, ENCFF807MUK 2217456264 ENCODE Processing Pipeline fddfb26ffdf0dba142e96bf34512b16d https://www.encodeproject.org/files/ENCFF175TNH/@@download/ENCFF175TNH.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF720PEL bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165TPB, ENCFF186WPX, ENCFF807MUK 3005638018 ENCODE Processing Pipeline eb27a3af123af7d972b1b1ac360cf979 https://www.encodeproject.org/files/ENCFF720PEL/@@download/ENCFF720PEL.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF611DOX bigWig signal p-value ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF175TNH, ENCFF581ZJL 892782560 ENCODE Processing Pipeline be3ef4e95d43e92df85802d3c8ec2e5a https://www.encodeproject.org/files/ENCFF611DOX/@@download/ENCFF611DOX.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF804TRB bigWig signal p-value ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF720PEL 952701462 ENCODE Processing Pipeline 59b10db94967f970ca347202836e3570 https://www.encodeproject.org/files/ENCFF804TRB/@@download/ENCFF804TRB.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF435WYY bigWig signal p-value ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF175TNH, ENCFF581ZJL, ENCFF720PEL 1562080741 ENCODE Processing Pipeline 01056806b9898928661fe36a75d1948b https://www.encodeproject.org/files/ENCFF435WYY/@@download/ENCFF435WYY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF711VAJ bigWig fold change over control ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF175TNH, ENCFF581ZJL 850742343 ENCODE Processing Pipeline fa96e7ca2c0bf54932a1a629c2e5c7e9 https://www.encodeproject.org/files/ENCFF711VAJ/@@download/ENCFF711VAJ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF966FHO bigWig fold change over control ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF720PEL 984573330 ENCODE Processing Pipeline 10f13f00ae5a639b79f22bd1b610b440 https://www.encodeproject.org/files/ENCFF966FHO/@@download/ENCFF966FHO.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF609CBO bigWig fold change over control ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF175TNH, ENCFF581ZJL, ENCFF720PEL 1818991755 ENCODE Processing Pipeline 76e315c5c500edbf3e94d9fb26083a4e https://www.encodeproject.org/files/ENCFF609CBO/@@download/ENCFF609CBO.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF898ILE bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF175TNH, ENCFF581ZJL, ENCFF720PEL 7151903 ENCODE Processing Pipeline f7621d311206eb0618a9bca6441fb0c1 https://www.encodeproject.org/files/ENCFF898ILE/@@download/ENCFF898ILE.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF244YZX bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF175TNH, ENCFF581ZJL 6318220 ENCODE Processing Pipeline 7690abbf3fc7c97d08a017e957604a05 https://www.encodeproject.org/files/ENCFF244YZX/@@download/ENCFF244YZX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF050TDD bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF720PEL 6579727 ENCODE Processing Pipeline ef27ea44e3d30e879a25641255d79101 https://www.encodeproject.org/files/ENCFF050TDD/@@download/ENCFF050TDD.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF825WLM bigBed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF244YZX 13262213 ENCODE Processing Pipeline e43fd35bb15840a95705c8c062209ca5 https://www.encodeproject.org/files/ENCFF825WLM/@@download/ENCFF825WLM.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF625WGN bigBed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF050TDD 13331336 ENCODE Processing Pipeline ebfda0a5e32ca054f1716ace6df93234 https://www.encodeproject.org/files/ENCFF625WGN/@@download/ENCFF625WGN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF927TLB bigBed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF898ILE 13193758 ENCODE Processing Pipeline c7e880b4411ea007611406fcdd233e50 https://www.encodeproject.org/files/ENCFF927TLB/@@download/ENCFF927TLB.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF616JGV bam unfiltered alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 100 ENCFF328DHW, ENCFF370TGN, ENCFF643CGH 2738388787 ENCODE Processing Pipeline 9e4db182394f62033eede2c032705845 https://www.encodeproject.org/files/ENCFF616JGV/@@download/ENCFF616JGV.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF696EGT bam unfiltered alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165TPB, ENCFF186WPX, ENCFF643CGH 3567486611 ENCODE Processing Pipeline 5afe655a05478462bb4dac5aff2ae843 https://www.encodeproject.org/files/ENCFF696EGT/@@download/ENCFF696EGT.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF019RWB bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 100 ENCFF328DHW, ENCFF370TGN, ENCFF643CGH 2218229655 ENCODE Processing Pipeline bb5f9c4fe1a5cf87962476bf3bb9e60f https://www.encodeproject.org/files/ENCFF019RWB/@@download/ENCFF019RWB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF353EFN bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165TPB, ENCFF186WPX, ENCFF643CGH 3007341660 ENCODE Processing Pipeline 946b1f96d4c37060e4cc179193cd356a https://www.encodeproject.org/files/ENCFF353EFN/@@download/ENCFF353EFN.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF386OOF bigWig signal p-value ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF019RWB, ENCFF910IKB 870179064 ENCODE Processing Pipeline 522ae9828c9e60da827735afa86496a5 https://www.encodeproject.org/files/ENCFF386OOF/@@download/ENCFF386OOF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF660JMD bigWig signal p-value ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF353EFN 963192277 ENCODE Processing Pipeline d6cec7ca09a7ce559dc73abebd566701 https://www.encodeproject.org/files/ENCFF660JMD/@@download/ENCFF660JMD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF297RIW bigWig signal p-value ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF019RWB, ENCFF227IZS, ENCFF353EFN, ENCFF910IKB 1466676558 ENCODE Processing Pipeline cdee10debb7f35d08d8b6cecbf116d5e https://www.encodeproject.org/files/ENCFF297RIW/@@download/ENCFF297RIW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF673OAT bigWig fold change over control ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF019RWB, ENCFF910IKB 851008094 ENCODE Processing Pipeline dd7dd5f3a539947708415b4c8f465b9d https://www.encodeproject.org/files/ENCFF673OAT/@@download/ENCFF673OAT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF340DHB bigWig fold change over control ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF353EFN 1005127101 ENCODE Processing Pipeline bebeb5a1c9a7633b817703eb4170bb9f https://www.encodeproject.org/files/ENCFF340DHB/@@download/ENCFF340DHB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF373YVF bigWig fold change over control ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF019RWB, ENCFF227IZS, ENCFF353EFN, ENCFF910IKB 1794958796 ENCODE Processing Pipeline 89c4235a81fb56563f7d496e427462ef https://www.encodeproject.org/files/ENCFF373YVF/@@download/ENCFF373YVF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF367RSU bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF019RWB, ENCFF910IKB 6175526 ENCODE Processing Pipeline 68afc59870a0384a45b17e4f50939bcc https://www.encodeproject.org/files/ENCFF367RSU/@@download/ENCFF367RSU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF471OVB bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF353EFN 6427343 ENCODE Processing Pipeline 21e810e7ea49a4074f863f29ba8cbe48 https://www.encodeproject.org/files/ENCFF471OVB/@@download/ENCFF471OVB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF736YXX bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF019RWB, ENCFF227IZS, ENCFF353EFN, ENCFF910IKB 7109326 ENCODE Processing Pipeline 6ed19628b6759b0f24de3178832a2252 https://www.encodeproject.org/files/ENCFF736YXX/@@download/ENCFF736YXX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF640TIS bigBed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF367RSU 13254745 ENCODE Processing Pipeline bc8a59a2a2446097c9d962134d57e8c5 https://www.encodeproject.org/files/ENCFF640TIS/@@download/ENCFF640TIS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF070RVC bigBed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF736YXX 13205945 ENCODE Processing Pipeline 3a7283b39dea6a06ba83c4c9e0b3a291 https://www.encodeproject.org/files/ENCFF070RVC/@@download/ENCFF070RVC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF308LVW bigBed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF471OVB 13331120 ENCODE Processing Pipeline e18687c70e828b3a0350839fd262eca2 https://www.encodeproject.org/files/ENCFF308LVW/@@download/ENCFF308LVW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF772WLM bed narrowPeak conservative idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF367RSU, ENCFF419RSJ, ENCFF471OVB, ENCFF736YXX 151635 ENCODE Processing Pipeline dd1229a236355ba53a00a6d8e27267ce https://www.encodeproject.org/files/ENCFF772WLM/@@download/ENCFF772WLM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF456RXF bigBed narrowPeak conservative idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF772WLM 389680 ENCODE Processing Pipeline cd5241018b290f58b6952e20358e8d9d https://www.encodeproject.org/files/ENCFF456RXF/@@download/ENCFF456RXF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF577LQR bed narrowPeak optimal idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF367RSU, ENCFF419RSJ, ENCFF471OVB, ENCFF736YXX 184702 ENCODE Processing Pipeline bb9c159f53df46172d968d0f6d728c72 https://www.encodeproject.org/files/ENCFF577LQR/@@download/ENCFF577LQR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF208ZBV bigBed narrowPeak optimal idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF577LQR 448404 ENCODE Processing Pipeline 59082c8ffb23bb3b8ef8a3eb4c634bd9 https://www.encodeproject.org/files/ENCFF208ZBV/@@download/ENCFF208ZBV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF921WMN bed narrowPeak optimal idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF050TDD, ENCFF244YZX, ENCFF898ILE 169082 ENCODE Processing Pipeline 20b395a93cc75d57adb1473906fc3ec0 https://www.encodeproject.org/files/ENCFF921WMN/@@download/ENCFF921WMN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF400OZY bigBed narrowPeak optimal idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF921WMN 349390 ENCODE Processing Pipeline 71b4810158ee293085c8e3fb03d9697f https://www.encodeproject.org/files/ENCFF400OZY/@@download/ENCFF400OZY.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF781MGX bigBed narrowPeak conservative idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF223MVK 286509 ENCODE Processing Pipeline b8e6503ed8c1d1e429a285e3b55f75a7 https://www.encodeproject.org/files/ENCFF781MGX/@@download/ENCFF781MGX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF223MVK bed narrowPeak conservative idr thresholded peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF050TDD, ENCFF244YZX, ENCFF898ILE 123774 ENCODE Processing Pipeline 167b03474eca1be06a0e11484acec536 https://www.encodeproject.org/files/ENCFF223MVK/@@download/ENCFF223MVK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF367BMZ fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 2 ENCFF697JWX 4361484076 Michael Snyder, Stanford 8275532161dd016b3f0b2ebcb52d6e80 SRA:SRR6213641 https://www.encodeproject.org/files/ENCFF367BMZ/@@download/ENCFF367BMZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF952VLJ fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 1 ENCFF230ILN 2260725117 Michael Snyder, Stanford c8749ddf78e896ded7d2be5bbea75f7f SRA:SRR6213642 https://www.encodeproject.org/files/ENCFF952VLJ/@@download/ENCFF952VLJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF697JWX fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 1 ENCFF367BMZ 4099856088 Michael Snyder, Stanford 5e0ba57f16ea9b309fd463a171987be8 SRA:SRR6213641 https://www.encodeproject.org/files/ENCFF697JWX/@@download/ENCFF697JWX.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF230ILN fastq reads ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 2 ENCFF952VLJ 2502409073 Michael Snyder, Stanford 674828bdcb2d458ce41de059e6e5d56d SRA:SRR6213642 https://www.encodeproject.org/files/ENCFF230ILN/@@download/ENCFF230ILN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF263GBY bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF643CGH, ENCFF952VLJ 4682225573 ENCODE Processing Pipeline 53a70bdd04ab7fd435e8e3a8000c8c78 https://www.encodeproject.org/files/ENCFF263GBY/@@download/ENCFF263GBY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF309MTT bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF807MUK, ENCFF952VLJ 4677511109 ENCODE Processing Pipeline b84101961d517f9682c779d65d719b3e https://www.encodeproject.org/files/ENCFF309MTT/@@download/ENCFF309MTT.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF253RNG bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF643CGH, ENCFF697JWX 7656391563 ENCODE Processing Pipeline 2ef3e2fcf85d52ab468c456729baa695 https://www.encodeproject.org/files/ENCFF253RNG/@@download/ENCFF253RNG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF870YQK bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF643CGH, ENCFF952VLJ 3492365386 ENCODE Processing Pipeline 9d8f66b558bee3f31aea2350297f0696 https://www.encodeproject.org/files/ENCFF870YQK/@@download/ENCFF870YQK.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF405TSG bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF807MUK, ENCFF952VLJ 3486018682 ENCODE Processing Pipeline d4be12a08e04de40d86c64f6bf81476a https://www.encodeproject.org/files/ENCFF405TSG/@@download/ENCFF405TSG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF338NXC bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF643CGH, ENCFF697JWX 4969036124 ENCODE Processing Pipeline 7b10d83afbcbe1537f7ffb79a62cd0c6 https://www.encodeproject.org/files/ENCFF338NXC/@@download/ENCFF338NXC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF293UYK bam unfiltered alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF697JWX, ENCFF807MUK 7652558570 ENCODE Processing Pipeline bfee8e47e1dde467e7b737e3faf9e06f https://www.encodeproject.org/files/ENCFF293UYK/@@download/ENCFF293UYK.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF429AJS bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF697JWX, ENCFF807MUK 4957031101 ENCODE Processing Pipeline 7bb5230a39494b8e7f69c15ffd870f23 https://www.encodeproject.org/files/ENCFF429AJS/@@download/ENCFF429AJS.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF813ILR bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 1007617352 ENCODE Processing Pipeline 57f2acd6b18b7e44cba4fd459bc1364b https://www.encodeproject.org/files/ENCFF813ILR/@@download/ENCFF813ILR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF002KMW bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 1648816139 ENCODE Processing Pipeline b183e7538b30f0fd2c291b99e3e96d48 https://www.encodeproject.org/files/ENCFF002KMW/@@download/ENCFF002KMW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF608IXU bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF405TSG, ENCFF429AJS, ENCFF592WAL, ENCFF901CND 2207390579 ENCODE Processing Pipeline a833d57cf95d14d7cf0e5c6f82e47ab4 https://www.encodeproject.org/files/ENCFF608IXU/@@download/ENCFF608IXU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF124AYA bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 1119743717 ENCODE Processing Pipeline 4d8ecee5b1075c27d1b068175ab78b89 https://www.encodeproject.org/files/ENCFF124AYA/@@download/ENCFF124AYA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF817GJH bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 1993298874 ENCODE Processing Pipeline 44686ba1fb8e3f61f02c918132055e95 https://www.encodeproject.org/files/ENCFF817GJH/@@download/ENCFF817GJH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF045XLJ bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF405TSG, ENCFF429AJS, ENCFF592WAL, ENCFF901CND 2342446914 ENCODE Processing Pipeline f54b7058104d05a678c2a797702c404e https://www.encodeproject.org/files/ENCFF045XLJ/@@download/ENCFF045XLJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF431GOQ bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 6827192 ENCODE Processing Pipeline eab27a127aef882b18d69401c9b98761 https://www.encodeproject.org/files/ENCFF431GOQ/@@download/ENCFF431GOQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF515FMR bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 7226284 ENCODE Processing Pipeline bf3da0bc8c3f37d49ce335c43b3ae03f https://www.encodeproject.org/files/ENCFF515FMR/@@download/ENCFF515FMR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF379VSR bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF405TSG, ENCFF429AJS, ENCFF592WAL, ENCFF901CND 7269282 ENCODE Processing Pipeline c209b87ef398b9d2764f36162ab6b259 https://www.encodeproject.org/files/ENCFF379VSR/@@download/ENCFF379VSR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF931WNT bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF431GOQ 12978189 ENCODE Processing Pipeline 79a3f28232f3a859f48aeff81a68242d https://www.encodeproject.org/files/ENCFF931WNT/@@download/ENCFF931WNT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF286TLK bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF379VSR 13152121 ENCODE Processing Pipeline 679d9149b11107c166051474bed27302 https://www.encodeproject.org/files/ENCFF286TLK/@@download/ENCFF286TLK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF337XDI bed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF379VSR, ENCFF431GOQ, ENCFF515FMR 707927 ENCODE Processing Pipeline 8590b47ba9e5029572e480c0556dbced https://www.encodeproject.org/files/ENCFF337XDI/@@download/ENCFF337XDI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF063PKA bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF515FMR 13193570 ENCODE Processing Pipeline a93a92772b787235c1d674e59a084785 https://www.encodeproject.org/files/ENCFF063PKA/@@download/ENCFF063PKA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF571TOW bigBed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF337XDI 1587870 ENCODE Processing Pipeline 4c220bc4fc5a4687f850f6798a55045c https://www.encodeproject.org/files/ENCFF571TOW/@@download/ENCFF571TOW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF339FFC bed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF379VSR, ENCFF431GOQ, ENCFF515FMR 878892 ENCODE Processing Pipeline d96de9a2859401cbdc832a84bc103e4d https://www.encodeproject.org/files/ENCFF339FFC/@@download/ENCFF339FFC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF417XQY bigBed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF339FFC 1898765 ENCODE Processing Pipeline 0394895810ab4d4a5a6134e3028a0689 https://www.encodeproject.org/files/ENCFF417XQY/@@download/ENCFF417XQY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF382BMO bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF666ATR, ENCFF870YQK 1242370946 ENCODE Processing Pipeline 4c658dc5a86a982359048bfd9913f6b7 https://www.encodeproject.org/files/ENCFF382BMO/@@download/ENCFF382BMO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF386NEY bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR 1792593693 ENCODE Processing Pipeline 7f9ce621e26dd21af12ddbed6b5ad961 https://www.encodeproject.org/files/ENCFF386NEY/@@download/ENCFF386NEY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF138CZM bigWig signal p-value ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR, ENCFF870YQK 1888945152 ENCODE Processing Pipeline 131ad6921e8e9d2526269d8513ae6834 https://www.encodeproject.org/files/ENCFF138CZM/@@download/ENCFF138CZM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF817SQJ bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF666ATR, ENCFF870YQK 1105331548 ENCODE Processing Pipeline d0ea10d17fab1541c8a433c61a909f09 https://www.encodeproject.org/files/ENCFF817SQJ/@@download/ENCFF817SQJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF148PRA bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR 1975377539 ENCODE Processing Pipeline e230bb329b9caf78b26a77ffe5d1079b https://www.encodeproject.org/files/ENCFF148PRA/@@download/ENCFF148PRA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF613CYH bigWig fold change over control ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR, ENCFF870YQK 2344255761 ENCODE Processing Pipeline 26571496e263a0b8663194dfe50c4a27 https://www.encodeproject.org/files/ENCFF613CYH/@@download/ENCFF613CYH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF148YIM bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF016LVW 12987144 ENCODE Processing Pipeline 0c1292aa4012ee1079f7a31b90148d75 https://www.encodeproject.org/files/ENCFF148YIM/@@download/ENCFF148YIM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF764DSU bed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF016LVW, ENCFF307WNL, ENCFF419RSJ, ENCFF634RWE 709528 ENCODE Processing Pipeline c27258846d921c51b0ccb2d3ed1b1334 https://www.encodeproject.org/files/ENCFF764DSU/@@download/ENCFF764DSU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF489WUP bigBed narrowPeak conservative idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF764DSU 1590546 ENCODE Processing Pipeline 6ff329a1710fc2c61968e8acfe51ae5b https://www.encodeproject.org/files/ENCFF489WUP/@@download/ENCFF489WUP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF738EPP bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF634RWE 13163834 ENCODE Processing Pipeline c0747eb4262ba1d8524583b190b75781 https://www.encodeproject.org/files/ENCFF738EPP/@@download/ENCFF738EPP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF526WVH bed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF016LVW, ENCFF307WNL, ENCFF419RSJ, ENCFF634RWE 871355 ENCODE Processing Pipeline 466dc0fc0dbdc5c7412e8b9413345657 https://www.encodeproject.org/files/ENCFF526WVH/@@download/ENCFF526WVH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF016LVW bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF666ATR, ENCFF870YQK 6775589 ENCODE Processing Pipeline c40350fdb023f4d85661c31d1d3f4c9e https://www.encodeproject.org/files/ENCFF016LVW/@@download/ENCFF016LVW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF634RWE bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR, ENCFF870YQK 7273466 ENCODE Processing Pipeline bf316cfd5eab104982b4b99c34d21d96 https://www.encodeproject.org/files/ENCFF634RWE/@@download/ENCFF634RWE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF041VBM bigBed narrowPeak optimal idr thresholded peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF526WVH 1888033 ENCODE Processing Pipeline 2358c12c82d1d32d129ba653496f0ec5 https://www.encodeproject.org/files/ENCFF041VBM/@@download/ENCFF041VBM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF520AII bigBed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF307WNL 13236302 ENCODE Processing Pipeline 54f3b357f3052f20ed8db2752072041c https://www.encodeproject.org/files/ENCFF520AII/@@download/ENCFF520AII.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF307WNL bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF322NTO, ENCFF338NXC, ENCFF666ATR 7241042 ENCODE Processing Pipeline e734575e2331625fc8a14c955b11cb01 https://www.encodeproject.org/files/ENCFF307WNL/@@download/ENCFF307WNL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF667HER bam unfiltered alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF239XFD, ENCFF807MUK, ENCFF843QOR 4032855862 ENCODE Processing Pipeline 4e24d7f436e0d405ca41f7be04608935 https://www.encodeproject.org/files/ENCFF667HER/@@download/ENCFF667HER.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF251WCF bam unfiltered alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF030EJQ, ENCFF807MUK, ENCFF845NVE 5657757925 ENCODE Processing Pipeline 76ed07633177b8bbf8a6006c4b365abd https://www.encodeproject.org/files/ENCFF251WCF/@@download/ENCFF251WCF.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF843QOR fastq reads ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF239XFD 1896684751 Michael Snyder, Stanford b1b269e0f7563ab4870462437570cb1d SRA:SRR5111047 https://www.encodeproject.org/files/ENCFF843QOR/@@download/ENCFF843QOR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF030EJQ fastq reads ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF845NVE 2648391803 Michael Snyder, Stanford 9acc311f36a877381102552d74177aa4 SRA:SRR5111048 https://www.encodeproject.org/files/ENCFF030EJQ/@@download/ENCFF030EJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF845NVE fastq reads ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF030EJQ 2650664541 Michael Snyder, Stanford 01eb20a3c567598ab30d9f2a0f0f145f SRA:SRR5111048 https://www.encodeproject.org/files/ENCFF845NVE/@@download/ENCFF845NVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF239XFD fastq reads ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF843QOR 1851568178 Michael Snyder, Stanford ce3885e752f19bf4ea5bc88f29d097f4 SRA:SRR5111047 https://www.encodeproject.org/files/ENCFF239XFD/@@download/ENCFF239XFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF167RGS bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF239XFD, ENCFF807MUK, ENCFF843QOR 3246261874 ENCODE Processing Pipeline 05a7a5b5030d96d9e28ecca6d4ae4b35 https://www.encodeproject.org/files/ENCFF167RGS/@@download/ENCFF167RGS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF689KTQ bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF030EJQ, ENCFF807MUK, ENCFF845NVE 4512438449 ENCODE Processing Pipeline 8d18dcbacf858d287c3bfc65879e530f https://www.encodeproject.org/files/ENCFF689KTQ/@@download/ENCFF689KTQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF131KPZ bigWig signal p-value ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF167RGS, ENCFF581ZJL 1001626051 ENCODE Processing Pipeline 369d9b53537db17071daebad381aed00 https://www.encodeproject.org/files/ENCFF131KPZ/@@download/ENCFF131KPZ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF781CIK bigWig signal p-value ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF689KTQ 920223118 ENCODE Processing Pipeline ff333ce2aacdf8d2de9b2f1426a79dcd https://www.encodeproject.org/files/ENCFF781CIK/@@download/ENCFF781CIK.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF340BLF bigWig signal p-value ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF167RGS, ENCFF581ZJL, ENCFF689KTQ 1877814285 ENCODE Processing Pipeline 2413c5c8e08a3794735cdfb4953fe888 https://www.encodeproject.org/files/ENCFF340BLF/@@download/ENCFF340BLF.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF190KTA bigWig fold change over control ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF167RGS, ENCFF581ZJL 1058905259 ENCODE Processing Pipeline 0d4b258debeaca46f4593d4be38532aa https://www.encodeproject.org/files/ENCFF190KTA/@@download/ENCFF190KTA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF524YMI bigWig fold change over control ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF689KTQ 1105578896 ENCODE Processing Pipeline 389162d3e4f287e9942b305f65839f7f https://www.encodeproject.org/files/ENCFF524YMI/@@download/ENCFF524YMI.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF080AFW bigWig fold change over control ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF167RGS, ENCFF581ZJL, ENCFF689KTQ 1971535279 ENCODE Processing Pipeline de6f59e1a156a1b0d80aed38c37cf552 https://www.encodeproject.org/files/ENCFF080AFW/@@download/ENCFF080AFW.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF101SDV bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF167RGS, ENCFF581ZJL, ENCFF689KTQ 7178040 ENCODE Processing Pipeline 0de4c28ddb2b43817cc84236be2e66a4 https://www.encodeproject.org/files/ENCFF101SDV/@@download/ENCFF101SDV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF524RDY bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF167RGS, ENCFF581ZJL 6933055 ENCODE Processing Pipeline 1c3305645ee0244fa7084996518070cd https://www.encodeproject.org/files/ENCFF524RDY/@@download/ENCFF524RDY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF683CLN bigBed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF524RDY 13121840 ENCODE Processing Pipeline 923c0381027c18a3bd41b9dc2a8f56b4 https://www.encodeproject.org/files/ENCFF683CLN/@@download/ENCFF683CLN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF333ULN bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF689KTQ 7069411 ENCODE Processing Pipeline 038820ec11df6d6781de8da33e8ea384 https://www.encodeproject.org/files/ENCFF333ULN/@@download/ENCFF333ULN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF070CAG bigBed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF333ULN 12994210 ENCODE Processing Pipeline 4a994320b1ab1af66a7c51dc4d55fcad https://www.encodeproject.org/files/ENCFF070CAG/@@download/ENCFF070CAG.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF323FPW bigBed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF101SDV 12794709 ENCODE Processing Pipeline 425278c06aa2390dbf117310b401b4b8 https://www.encodeproject.org/files/ENCFF323FPW/@@download/ENCFF323FPW.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF761RWD bam unfiltered alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF239XFD, ENCFF643CGH, ENCFF843QOR 4035567770 ENCODE Processing Pipeline 71160abffb8ecc0c219f9058f30d65de https://www.encodeproject.org/files/ENCFF761RWD/@@download/ENCFF761RWD.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF003SPM bam unfiltered alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF030EJQ, ENCFF643CGH, ENCFF845NVE 5661082048 ENCODE Processing Pipeline dc9aacf0327b9a2ab2c11c4a33a1d0fb https://www.encodeproject.org/files/ENCFF003SPM/@@download/ENCFF003SPM.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF754GYS bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF030EJQ, ENCFF643CGH, ENCFF845NVE 4515247950 ENCODE Processing Pipeline c0d371dc787b865a438d224a6037691d https://www.encodeproject.org/files/ENCFF754GYS/@@download/ENCFF754GYS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF035CJB bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF239XFD, ENCFF643CGH, ENCFF843QOR 3247919616 ENCODE Processing Pipeline aa3d36df032a4a1c19332d879cdc7573 https://www.encodeproject.org/files/ENCFF035CJB/@@download/ENCFF035CJB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF910KKD bigWig signal p-value ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF035CJB, ENCFF910IKB 950220676 ENCODE Processing Pipeline 062dccde6a175cdf17504e9bb7fc7e27 https://www.encodeproject.org/files/ENCFF910KKD/@@download/ENCFF910KKD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF650TBT bigWig signal p-value ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF754GYS 1092152129 ENCODE Processing Pipeline 70f533fc2c04f39ab15aaeb7bb119c42 https://www.encodeproject.org/files/ENCFF650TBT/@@download/ENCFF650TBT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF044EPC bigWig signal p-value ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF035CJB, ENCFF227IZS, ENCFF754GYS, ENCFF910IKB 1681007049 ENCODE Processing Pipeline c0c048503de9310284eb298e9683c9b5 https://www.encodeproject.org/files/ENCFF044EPC/@@download/ENCFF044EPC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF277NXA bigWig fold change over control ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF035CJB, ENCFF910IKB 1028243642 ENCODE Processing Pipeline d5a8726737d44740502ce31d1be12479 https://www.encodeproject.org/files/ENCFF277NXA/@@download/ENCFF277NXA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF882JPS bigWig fold change over control ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF754GYS 1104886100 ENCODE Processing Pipeline 3012fcc81605868a8c84917dbed266ee https://www.encodeproject.org/files/ENCFF882JPS/@@download/ENCFF882JPS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF357KCF bigWig fold change over control ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF035CJB, ENCFF227IZS, ENCFF754GYS, ENCFF910IKB 2004600333 ENCODE Processing Pipeline 1969faec5189864fad7f0b32f64f51ff https://www.encodeproject.org/files/ENCFF357KCF/@@download/ENCFF357KCF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF909RRT bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF035CJB, ENCFF910IKB 6826961 ENCODE Processing Pipeline 7b33c6ed24b61d7cb79c779745ba4ed9 https://www.encodeproject.org/files/ENCFF909RRT/@@download/ENCFF909RRT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF183XMA bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF754GYS 6960087 ENCODE Processing Pipeline e01d68b420ab4baec07c47906baebf4c https://www.encodeproject.org/files/ENCFF183XMA/@@download/ENCFF183XMA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF431YFN bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF035CJB, ENCFF227IZS, ENCFF754GYS, ENCFF910IKB 7199473 ENCODE Processing Pipeline 464d6f1b6c3388a9855f2c5a85bce639 https://www.encodeproject.org/files/ENCFF431YFN/@@download/ENCFF431YFN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF519XNN bigBed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF909RRT 13093480 ENCODE Processing Pipeline f0cdda06536f391829ebf11b8951cc21 https://www.encodeproject.org/files/ENCFF519XNN/@@download/ENCFF519XNN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF468WPQ bigBed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF183XMA 12952429 ENCODE Processing Pipeline 94c35882af8c05cd292b1feaf1f8534c https://www.encodeproject.org/files/ENCFF468WPQ/@@download/ENCFF468WPQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF740KFU bigBed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF431YFN 12830375 ENCODE Processing Pipeline 7f2e806da345124b935cac0436cc15eb https://www.encodeproject.org/files/ENCFF740KFU/@@download/ENCFF740KFU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF892BNB bed narrowPeak conservative idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF183XMA, ENCFF419RSJ, ENCFF431YFN, ENCFF909RRT 393806 ENCODE Processing Pipeline 1b84e4fb556284f763450540a0fd441d https://www.encodeproject.org/files/ENCFF892BNB/@@download/ENCFF892BNB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF408GQR bigBed narrowPeak conservative idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF892BNB 822214 ENCODE Processing Pipeline 335dee4b2af66a7d20ff0ff30c0862ca https://www.encodeproject.org/files/ENCFF408GQR/@@download/ENCFF408GQR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF808NWU bed narrowPeak optimal idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF183XMA, ENCFF419RSJ, ENCFF431YFN, ENCFF909RRT 494804 ENCODE Processing Pipeline 091147fb85557ce881ed563fdad1fcbd https://www.encodeproject.org/files/ENCFF808NWU/@@download/ENCFF808NWU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF616HUW bigBed narrowPeak optimal idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF808NWU 977635 ENCODE Processing Pipeline cd80e70ba072f7dce0ee45aeb08dbc39 https://www.encodeproject.org/files/ENCFF616HUW/@@download/ENCFF616HUW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF634SXL bigBed narrowPeak optimal idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF076IFG 878811 ENCODE Processing Pipeline 2518b8dae328477df3bf09b5622ab066 https://www.encodeproject.org/files/ENCFF634SXL/@@download/ENCFF634SXL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF132ZXL bed narrowPeak conservative idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF101SDV, ENCFF333ULN, ENCFF524RDY 339125 ENCODE Processing Pipeline 44eca35ec4dc43390bc8312b6bec294c https://www.encodeproject.org/files/ENCFF132ZXL/@@download/ENCFF132ZXL.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF953GAI bigBed narrowPeak conservative idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF132ZXL 744618 ENCODE Processing Pipeline 5919e0d870834b419604661685c69a37 https://www.encodeproject.org/files/ENCFF953GAI/@@download/ENCFF953GAI.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF076IFG bed narrowPeak optimal idr thresholded peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF101SDV, ENCFF333ULN, ENCFF524RDY 429072 ENCODE Processing Pipeline 2685a6bf489be07bdc3b2f2d29d997cd https://www.encodeproject.org/files/ENCFF076IFG/@@download/ENCFF076IFG.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF827IYA bam unfiltered alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF939TTG 1463692197 ENCODE Processing Pipeline 2ef4fbe437093678954607f01f171f6f https://www.encodeproject.org/files/ENCFF827IYA/@@download/ENCFF827IYA.bam hg19 released low read depth, antibody characterized with exemption ENCFF393IBD bam unfiltered alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 50 ENCFF137GGC, ENCFF807MUK 1440329158 ENCODE Processing Pipeline e0913d72547ccf7bd8bf8313e31d145e https://www.encodeproject.org/files/ENCFF393IBD/@@download/ENCFF393IBD.bam hg19 released low read depth, antibody characterized with exemption ENCFF123GSL bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131GPA, ENCFF162LLQ, ENCFF632RLI, ENCFF925QJE 777479109 ENCODE Processing Pipeline 9cc63f7b0384d92a6c04b87700548b0a https://www.encodeproject.org/files/ENCFF123GSL/@@download/ENCFF123GSL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF174SPG bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF131GPA, ENCFF925QJE 2147547 ENCODE Processing Pipeline 590be9160b549591f93bb5004c57222c https://www.encodeproject.org/files/ENCFF174SPG/@@download/ENCFF174SPG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF198ATT bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF557TVO 10929859 ENCODE Processing Pipeline ab9abacc17f706e8c3c52f555074882c https://www.encodeproject.org/files/ENCFF198ATT/@@download/ENCFF198ATT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF462LCU bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131GPA, ENCFF162LLQ, ENCFF632RLI, ENCFF925QJE 879093045 ENCODE Processing Pipeline d3ccc3859c67c6bb9d882cb489bad14b https://www.encodeproject.org/files/ENCFF462LCU/@@download/ENCFF462LCU.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF557TVO bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF162LLQ, ENCFF632RLI 5143877 ENCODE Processing Pipeline 55c4690cdda179c321aef754b40da277 https://www.encodeproject.org/files/ENCFF557TVO/@@download/ENCFF557TVO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF755OPP bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131GPA, ENCFF162LLQ, ENCFF632RLI, ENCFF925QJE 6357163 ENCODE Processing Pipeline 79962d2b443add2519fdea8f311380f1 https://www.encodeproject.org/files/ENCFF755OPP/@@download/ENCFF755OPP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF854JST bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF174SPG 4285467 ENCODE Processing Pipeline 014d17cdd8c18a49cebabdbe20ca3f3b https://www.encodeproject.org/files/ENCFF854JST/@@download/ENCFF854JST.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF188XCL bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF755OPP 13403454 ENCODE Processing Pipeline f188572f5067c80351ebccdcbb1e481f https://www.encodeproject.org/files/ENCFF188XCL/@@download/ENCFF188XCL.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF860FKS bed narrowPeak conservative idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF174SPG, ENCFF557TVO, ENCFF755OPP 113131 ENCODE Processing Pipeline f59c4158d3756565968c1d8eed7c3dc2 https://www.encodeproject.org/files/ENCFF860FKS/@@download/ENCFF860FKS.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF563KEA bigBed narrowPeak conservative idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF860FKS 277169 ENCODE Processing Pipeline 21eea54eacbe179759c77b6ec5df1f3d https://www.encodeproject.org/files/ENCFF563KEA/@@download/ENCFF563KEA.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF132BFM bed narrowPeak optimal idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF174SPG, ENCFF557TVO, ENCFF755OPP 205039 ENCODE Processing Pipeline d8eacef275ec089ec50959bc1c078ffc https://www.encodeproject.org/files/ENCFF132BFM/@@download/ENCFF132BFM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF271HLX bigBed narrowPeak optimal idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF132BFM 413585 ENCODE Processing Pipeline 3fdccf42b215fc845e561ea11f8d831b https://www.encodeproject.org/files/ENCFF271HLX/@@download/ENCFF271HLX.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF137GGC fastq reads ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1363802420 Richard Myers, HAIB fbff43907a117b2f555340f2cd8e77ed SRA:SRR5338741 https://www.encodeproject.org/files/ENCFF137GGC/@@download/ENCFF137GGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGD/ released low read depth, antibody characterized with exemption ENCFF939TTG fastq reads ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1358374567 Richard Myers, HAIB 4a8fe12ae30706fa39ad1ee4da8ca460 SRA:SRR5338742 https://www.encodeproject.org/files/ENCFF939TTG/@@download/ENCFF939TTG.fastq.gz Illumina HiSeq 2000 /files/ENCFF820XYY/ released low read depth, antibody characterized with exemption ENCFF162LLQ bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 50 ENCFF137GGC, ENCFF807MUK 1021738373 ENCODE Processing Pipeline e90e07b5d70cfb83fe7cdefdb45af2d4 https://www.encodeproject.org/files/ENCFF162LLQ/@@download/ENCFF162LLQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF131GPA bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF939TTG 1106852999 ENCODE Processing Pipeline c86337970bf8e63d1ffa58d05fdd79da https://www.encodeproject.org/files/ENCFF131GPA/@@download/ENCFF131GPA.bam hg19 released low read depth, antibody characterized with exemption ENCFF266NVH bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF131GPA, ENCFF925QJE 484928585 ENCODE Processing Pipeline e3d8db046a437ac538b8010bfe82e745 https://www.encodeproject.org/files/ENCFF266NVH/@@download/ENCFF266NVH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF636BWE bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131GPA, ENCFF162LLQ, ENCFF419TYN, ENCFF925QJE 6517828 ENCODE Processing Pipeline 1b6d1cc8a7b92a82922f4f24d308797e https://www.encodeproject.org/files/ENCFF636BWE/@@download/ENCFF636BWE.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF167BLN bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131GPA, ENCFF162LLQ, ENCFF419TYN, ENCFF925QJE 780170533 ENCODE Processing Pipeline 6d090c93ec2e4d6056742f91a04108bd https://www.encodeproject.org/files/ENCFF167BLN/@@download/ENCFF167BLN.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF850DVA bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF682ZLL 11027663 ENCODE Processing Pipeline 954b91d24a0adf616e6f0b69f2bc05bf https://www.encodeproject.org/files/ENCFF850DVA/@@download/ENCFF850DVA.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF619HGM bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF628KQC 4302595 ENCODE Processing Pipeline b33f77ee481d9ca0645068ca637d5972 https://www.encodeproject.org/files/ENCFF619HGM/@@download/ENCFF619HGM.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF321JIS bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF636BWE 13410738 ENCODE Processing Pipeline 863a32ed621fe21ceb74e8cb4e9aa0ea https://www.encodeproject.org/files/ENCFF321JIS/@@download/ENCFF321JIS.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF617EWV bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF162LLQ, ENCFF632RLI 350974427 ENCODE Processing Pipeline 2a657ec535e2b0b018d8493d4d41dc90 https://www.encodeproject.org/files/ENCFF617EWV/@@download/ENCFF617EWV.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF468JBB bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF162LLQ, ENCFF632RLI 368638231 ENCODE Processing Pipeline f466e6084ad34d9108a2d079302178c2 https://www.encodeproject.org/files/ENCFF468JBB/@@download/ENCFF468JBB.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF682ZLL bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF162LLQ, ENCFF419TYN 5356830 ENCODE Processing Pipeline fc900361c68396ee9761d67bcf3aaaf1 https://www.encodeproject.org/files/ENCFF682ZLL/@@download/ENCFF682ZLL.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF950JCI bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF131GPA, ENCFF925QJE 435309112 ENCODE Processing Pipeline a16c8acad46887e616c65703120233a7 https://www.encodeproject.org/files/ENCFF950JCI/@@download/ENCFF950JCI.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF396ARC bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131GPA, ENCFF162LLQ, ENCFF419TYN, ENCFF925QJE 879492095 ENCODE Processing Pipeline 11e90a5f77ed75bba9277da4e500f79a https://www.encodeproject.org/files/ENCFF396ARC/@@download/ENCFF396ARC.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF628KQC bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF131GPA, ENCFF925QJE 2201515 ENCODE Processing Pipeline 619c4a9e07b8a8a8602fe67b799f4a49 https://www.encodeproject.org/files/ENCFF628KQC/@@download/ENCFF628KQC.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF546QWD bam unfiltered alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF939TTG 1467813481 ENCODE Processing Pipeline ce2b6881f56a82b07b9969622d1b64e6 https://www.encodeproject.org/files/ENCFF546QWD/@@download/ENCFF546QWD.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF256BJV bam unfiltered alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 50 ENCFF137GGC, ENCFF643CGH 1444659363 ENCODE Processing Pipeline a8377eca8992f384f96a0f766a07e662 https://www.encodeproject.org/files/ENCFF256BJV/@@download/ENCFF256BJV.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF908SPX bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF939TTG 1106836211 ENCODE Processing Pipeline fefc088ff89f6e4385df01bfe90fc179 https://www.encodeproject.org/files/ENCFF908SPX/@@download/ENCFF908SPX.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF010EFV bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 50 ENCFF137GGC, ENCFF643CGH 1021640457 ENCODE Processing Pipeline 3066302e93e782edd312103d6393d196 https://www.encodeproject.org/files/ENCFF010EFV/@@download/ENCFF010EFV.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF029GFV bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF010EFV, ENCFF113QYJ 490399074 ENCODE Processing Pipeline 378fd87a251dc4f272517970faa35d77 https://www.encodeproject.org/files/ENCFF029GFV/@@download/ENCFF029GFV.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF678XLV bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF715ECN, ENCFF908SPX 483272291 ENCODE Processing Pipeline 7d8086872f813c25b703becdd5da23f2 https://www.encodeproject.org/files/ENCFF678XLV/@@download/ENCFF678XLV.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF392VJI bigWig signal p-value ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF010EFV, ENCFF113QYJ, ENCFF715ECN, ENCFF908SPX 705556620 ENCODE Processing Pipeline 1b548a4fac6e259bd775252f1ab49520 https://www.encodeproject.org/files/ENCFF392VJI/@@download/ENCFF392VJI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF538XLD bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF010EFV, ENCFF113QYJ 366229994 ENCODE Processing Pipeline ccbf226bf5f78444140eac94673cb54e https://www.encodeproject.org/files/ENCFF538XLD/@@download/ENCFF538XLD.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF339VMG bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF715ECN, ENCFF908SPX 430617030 ENCODE Processing Pipeline 180adf50559b146296acd8281d52653c https://www.encodeproject.org/files/ENCFF339VMG/@@download/ENCFF339VMG.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF717RHJ bigWig fold change over control ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF010EFV, ENCFF113QYJ, ENCFF715ECN, ENCFF908SPX 865950691 ENCODE Processing Pipeline 3490e63590fc45b32abdc05f2330178c https://www.encodeproject.org/files/ENCFF717RHJ/@@download/ENCFF717RHJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF157NWN bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF010EFV, ENCFF113QYJ 5081270 ENCODE Processing Pipeline 1a76ca1fbcfc39538fd8305e3f397427 https://www.encodeproject.org/files/ENCFF157NWN/@@download/ENCFF157NWN.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF981LYA bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF157NWN 10906077 ENCODE Processing Pipeline 0ce821cdf5fe9e4bc91e55996ef806e0 https://www.encodeproject.org/files/ENCFF981LYA/@@download/ENCFF981LYA.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF466FKH bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF010EFV, ENCFF113QYJ, ENCFF715ECN, ENCFF908SPX 6359345 ENCODE Processing Pipeline e526733c588254cd3be829b66378b329 https://www.encodeproject.org/files/ENCFF466FKH/@@download/ENCFF466FKH.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF736DIR bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF715ECN, ENCFF908SPX 2120096 ENCODE Processing Pipeline 4d7d5f59dce1094463f3c7aecc0244a5 https://www.encodeproject.org/files/ENCFF736DIR/@@download/ENCFF736DIR.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF181RSD bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF736DIR 4261459 ENCODE Processing Pipeline e27f9712ad1a56c553317a4270d0e535 https://www.encodeproject.org/files/ENCFF181RSD/@@download/ENCFF181RSD.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF425SZJ bigBed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF466FKH 13410210 ENCODE Processing Pipeline 731b5fade8160b30f5de73cd19103140 https://www.encodeproject.org/files/ENCFF425SZJ/@@download/ENCFF425SZJ.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF531PVU bigBed narrowPeak conservative idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF319FBU 280240 ENCODE Processing Pipeline 4f9e25ed9bdef615dfe39d49046511d2 https://www.encodeproject.org/files/ENCFF531PVU/@@download/ENCFF531PVU.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF257QND bed narrowPeak optimal idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF157NWN, ENCFF419RSJ, ENCFF466FKH, ENCFF736DIR 209627 ENCODE Processing Pipeline aa623ac2ea9c3a9f84b6be83640ea8b0 https://www.encodeproject.org/files/ENCFF257QND/@@download/ENCFF257QND.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF319FBU bed narrowPeak conservative idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF157NWN, ENCFF419RSJ, ENCFF466FKH, ENCFF736DIR 114972 ENCODE Processing Pipeline a08941ab501bffa87e26fe67a9e96458 https://www.encodeproject.org/files/ENCFF319FBU/@@download/ENCFF319FBU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF455EXR bigBed narrowPeak optimal idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF257QND 420193 ENCODE Processing Pipeline 25c47f6b2d2e28e31b321d020481f3a9 https://www.encodeproject.org/files/ENCFF455EXR/@@download/ENCFF455EXR.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF104RMI bigBed narrowPeak optimal idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF543UJL 380252 ENCODE Processing Pipeline 7af8e4fa2dcd82e0244ada7e39314195 https://www.encodeproject.org/files/ENCFF104RMI/@@download/ENCFF104RMI.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF543UJL bed narrowPeak optimal idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF628KQC, ENCFF636BWE, ENCFF682ZLL 181988 ENCODE Processing Pipeline d5d787e0e7925ce0d9da6e778090b957 https://www.encodeproject.org/files/ENCFF543UJL/@@download/ENCFF543UJL.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF335WSB bigBed narrowPeak conservative idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF870WOO 216451 ENCODE Processing Pipeline ae14f81cdc717574e02b37ba0dbb3f15 https://www.encodeproject.org/files/ENCFF335WSB/@@download/ENCFF335WSB.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF870WOO bed narrowPeak conservative idr thresholded peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF628KQC, ENCFF636BWE, ENCFF682ZLL 104008 ENCODE Processing Pipeline 34bc8234ef31d548e5b55f8387ff1d44 https://www.encodeproject.org/files/ENCFF870WOO/@@download/ENCFF870WOO.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF337FVY fastq reads ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 418590049 Xiang-Dong Fu, UCSD c1b7ccd41959fb5cfec0cc38c4109e3c https://www.encodeproject.org/files/ENCFF337FVY/@@download/ENCFF337FVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF064RLS fastq reads ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 398979223 Xiang-Dong Fu, UCSD 6dd87cb02f4357dc12d29031a3fbcc83 https://www.encodeproject.org/files/ENCFF064RLS/@@download/ENCFF064RLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF577LLL/ released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF709QNC bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF337FVY, ENCFF807MUK 201635267 ENCODE Processing Pipeline e7b301cc9231ada9a425c54aeee17c22 https://www.encodeproject.org/files/ENCFF709QNC/@@download/ENCFF709QNC.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF402MOS bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF064RLS, ENCFF807MUK 251308754 ENCODE Processing Pipeline 64c2114fb2da67ffd6eefdc3da76139d https://www.encodeproject.org/files/ENCFF402MOS/@@download/ENCFF402MOS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF259RSX bam unfiltered alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF064RLS, ENCFF643CGH 523479473 ENCODE Processing Pipeline cec15e75269c99de567df7b190494ad5 https://www.encodeproject.org/files/ENCFF259RSX/@@download/ENCFF259RSX.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF254WSM bam unfiltered alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF337FVY, ENCFF643CGH 513569394 ENCODE Processing Pipeline 5f0a35ba79a0adcb1253959c3cbc333f https://www.encodeproject.org/files/ENCFF254WSM/@@download/ENCFF254WSM.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF390DNG bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF337FVY, ENCFF643CGH 201322490 ENCODE Processing Pipeline d25ba8bd5ca59e1373904ea398f9a304 https://www.encodeproject.org/files/ENCFF390DNG/@@download/ENCFF390DNG.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF474FMS bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF064RLS, ENCFF643CGH 250920446 ENCODE Processing Pipeline 8c5a18d2d1493e6aa1a3e0d5243c630a https://www.encodeproject.org/files/ENCFF474FMS/@@download/ENCFF474FMS.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF722INI bigWig signal p-value ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF390DNG, ENCFF906SAI 510201860 ENCODE Processing Pipeline 1f0e9de07eba862b30162fc56a2fc8d0 https://www.encodeproject.org/files/ENCFF722INI/@@download/ENCFF722INI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF691YUR bigWig signal p-value ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF120YSP, ENCFF474FMS 522138950 ENCODE Processing Pipeline b1bdf43865137af7aff5b33a6cc6cc0d https://www.encodeproject.org/files/ENCFF691YUR/@@download/ENCFF691YUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF439LQK bigWig fold change over control ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF120YSP, ENCFF474FMS 247276846 ENCODE Processing Pipeline 0f691feda53540dac3e19bd02ecf967c https://www.encodeproject.org/files/ENCFF439LQK/@@download/ENCFF439LQK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF578JTO bigWig signal p-value ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF120YSP, ENCFF390DNG, ENCFF474FMS, ENCFF906SAI 932098968 ENCODE Processing Pipeline be1d590bf6cd6baf0a15272fcd6cb5e6 https://www.encodeproject.org/files/ENCFF578JTO/@@download/ENCFF578JTO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF838MTF bigWig fold change over control ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF390DNG, ENCFF906SAI 210358114 ENCODE Processing Pipeline 95ade94fa344bda9502f87e0e66a6960 https://www.encodeproject.org/files/ENCFF838MTF/@@download/ENCFF838MTF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF322KBR bigWig fold change over control ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF120YSP, ENCFF390DNG, ENCFF474FMS, ENCFF906SAI 593374261 ENCODE Processing Pipeline 2088205bc50747d73098caa3eab88965 https://www.encodeproject.org/files/ENCFF322KBR/@@download/ENCFF322KBR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF877VRW bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF120YSP, ENCFF474FMS 2919738 ENCODE Processing Pipeline 062bd4cc99c17f03cc02b199b5bace89 https://www.encodeproject.org/files/ENCFF877VRW/@@download/ENCFF877VRW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF278SFK bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF390DNG, ENCFF906SAI 2087223 ENCODE Processing Pipeline 5b274eccab96449848d74b5a20e8bda6 https://www.encodeproject.org/files/ENCFF278SFK/@@download/ENCFF278SFK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF061CWY bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF120YSP, ENCFF390DNG, ENCFF474FMS, ENCFF906SAI 5730657 ENCODE Processing Pipeline 147142bb3e14a01964114e6d163283d3 https://www.encodeproject.org/files/ENCFF061CWY/@@download/ENCFF061CWY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF904CWX bigBed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF877VRW 6670242 ENCODE Processing Pipeline 48cee9062fccab48c0d539b377bef7b8 https://www.encodeproject.org/files/ENCFF904CWX/@@download/ENCFF904CWX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF517DJE bigBed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF278SFK 5020152 ENCODE Processing Pipeline ebf5b2611644381b89927d1126125abd https://www.encodeproject.org/files/ENCFF517DJE/@@download/ENCFF517DJE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF916EOG bigBed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF061CWY 13471398 ENCODE Processing Pipeline 9acc2181aa14c55a4f40d605984552b9 https://www.encodeproject.org/files/ENCFF916EOG/@@download/ENCFF916EOG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF563WDZ bed narrowPeak optimal idr thresholded peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF061CWY, ENCFF278SFK, ENCFF419RSJ, ENCFF877VRW 6248 ENCODE Processing Pipeline ba175d1279e07895a451afb39e429df4 https://www.encodeproject.org/files/ENCFF563WDZ/@@download/ENCFF563WDZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF920VJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF563WDZ 97664 ENCODE Processing Pipeline 8f61a7789dfd6b845ebe9fc27fe9413c https://www.encodeproject.org/files/ENCFF920VJQ/@@download/ENCFF920VJQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF555BUM bigWig fold change over control ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF402MOS, ENCFF493QSH 247100741 ENCODE Processing Pipeline 136beb0891a70427e6bc4fa9e0e01968 https://www.encodeproject.org/files/ENCFF555BUM/@@download/ENCFF555BUM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF325TSC bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF641CEP, ENCFF709QNC 2240256 ENCODE Processing Pipeline d9b247dda84ccbccfbe1aa818d4405da https://www.encodeproject.org/files/ENCFF325TSC/@@download/ENCFF325TSC.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF541AHC bigWig signal p-value ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF402MOS, ENCFF493QSH, ENCFF641CEP, ENCFF709QNC 964242324 ENCODE Processing Pipeline 92ba9ecd5d9fe45284ff3e180f23e3ef https://www.encodeproject.org/files/ENCFF541AHC/@@download/ENCFF541AHC.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF932WVN bigBed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF212ABS 6747905 ENCODE Processing Pipeline 178170a6f7c359f2724a6d442fc3e476 https://www.encodeproject.org/files/ENCFF932WVN/@@download/ENCFF932WVN.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF529NTU bigBed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF325TSC 5224389 ENCODE Processing Pipeline d30878ea4815060418bcf7ddc0a5bbf4 https://www.encodeproject.org/files/ENCFF529NTU/@@download/ENCFF529NTU.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF256CSL bigWig signal p-value ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF641CEP, ENCFF709QNC 585027037 ENCODE Processing Pipeline b60048453352d5d0a144ce123c22843d https://www.encodeproject.org/files/ENCFF256CSL/@@download/ENCFF256CSL.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF235FTV bigBed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF764ZHV 13466413 ENCODE Processing Pipeline 151197c67ada60172653cac5e9fa56f7 https://www.encodeproject.org/files/ENCFF235FTV/@@download/ENCFF235FTV.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF563AXY bigWig signal p-value ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF402MOS, ENCFF493QSH 551557118 ENCODE Processing Pipeline 4836a2618ae1211add38d6ccddf0b336 https://www.encodeproject.org/files/ENCFF563AXY/@@download/ENCFF563AXY.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF534MXQ bigWig fold change over control ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF641CEP, ENCFF709QNC 210111900 ENCODE Processing Pipeline e9988daba838cb930bfd2ad6823dbc7a https://www.encodeproject.org/files/ENCFF534MXQ/@@download/ENCFF534MXQ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF948XVB bigWig fold change over control ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF402MOS, ENCFF493QSH, ENCFF641CEP, ENCFF709QNC 604513836 ENCODE Processing Pipeline 501d3606fb7d2a8eef9d1017d95320d6 https://www.encodeproject.org/files/ENCFF948XVB/@@download/ENCFF948XVB.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF212ABS bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF402MOS, ENCFF493QSH 2984149 ENCODE Processing Pipeline 274b166d82e9466f2143e4a7394ec866 https://www.encodeproject.org/files/ENCFF212ABS/@@download/ENCFF212ABS.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF764ZHV bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF402MOS, ENCFF493QSH, ENCFF641CEP, ENCFF709QNC 5850514 ENCODE Processing Pipeline cd81ce772bf7fdff2d23842c461ffed2 https://www.encodeproject.org/files/ENCFF764ZHV/@@download/ENCFF764ZHV.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF761RFH bed narrowPeak conservative idr thresholded peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF212ABS, ENCFF325TSC, ENCFF764ZHV 5961 ENCODE Processing Pipeline 4fc71f69eb5163f71d040396568e40c6 https://www.encodeproject.org/files/ENCFF761RFH/@@download/ENCFF761RFH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF479OSE bigBed narrowPeak conservative idr thresholded peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF761RFH 96252 ENCODE Processing Pipeline c6c6b717311415b697d1135ebd7545d0 https://www.encodeproject.org/files/ENCFF479OSE/@@download/ENCFF479OSE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF971VJZ bed narrowPeak optimal idr thresholded peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF212ABS, ENCFF325TSC, ENCFF764ZHV 7462 ENCODE Processing Pipeline b168b2de611fd90e36c8a89235a80191 https://www.encodeproject.org/files/ENCFF971VJZ/@@download/ENCFF971VJZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF863XRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF971VJZ 73575 ENCODE Processing Pipeline 7157e7e4bb9f98e8ec173345d56ef672 https://www.encodeproject.org/files/ENCFF863XRQ/@@download/ENCFF863XRQ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF041SSZ bam unfiltered alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF337FVY, ENCFF807MUK 511452491 ENCODE Processing Pipeline 7d145e6947095ad57ee642b882c05558 https://www.encodeproject.org/files/ENCFF041SSZ/@@download/ENCFF041SSZ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF312KVO bam unfiltered alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF064RLS, ENCFF807MUK 521630424 ENCODE Processing Pipeline 0e1785460872d82bfe68d60965135b53 https://www.encodeproject.org/files/ENCFF312KVO/@@download/ENCFF312KVO.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF235PXN bam unfiltered alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 100 ENCFF134VGP, ENCFF160TXM, ENCFF807MUK 5945984642 ENCODE Processing Pipeline 440d9e368c1cfeab95357a23b9fc4e63 https://www.encodeproject.org/files/ENCFF235PXN/@@download/ENCFF235PXN.bam hg19 released mild to moderate bottlenecking ENCFF054TBR bam unfiltered alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 100 ENCFF197ETF, ENCFF608EHV, ENCFF807MUK 5217098296 ENCODE Processing Pipeline d8a382f70a3e8ca6e0256894d58d11c2 https://www.encodeproject.org/files/ENCFF054TBR/@@download/ENCFF054TBR.bam hg19 released mild to moderate bottlenecking ENCFF608EHV fastq reads ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF197ETF 2422597180 Michael Snyder, Stanford d03f9dabaab988f5f5ef4bcead87b264 SRA:SRR6213386 https://www.encodeproject.org/files/ENCFF608EHV/@@download/ENCFF608EHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF197ETF fastq reads ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF608EHV 2507388978 Michael Snyder, Stanford f8294f6fb299126b74b1433f491cb615 SRA:SRR6213386 https://www.encodeproject.org/files/ENCFF197ETF/@@download/ENCFF197ETF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF160TXM fastq reads ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF134VGP 2792291017 Michael Snyder, Stanford e31ec999d8e18d21d43d392708c32687 SRA:SRR6213387 https://www.encodeproject.org/files/ENCFF160TXM/@@download/ENCFF160TXM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF134VGP fastq reads ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF160TXM 2880849524 Michael Snyder, Stanford a6f2c78db7d5ae9a021107ae79c654c8 SRA:SRR6213387 https://www.encodeproject.org/files/ENCFF134VGP/@@download/ENCFF134VGP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF588VIM bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 100 ENCFF197ETF, ENCFF608EHV, ENCFF807MUK 3681205096 ENCODE Processing Pipeline 616ab18c4d288fe85e36fd8a718f1027 https://www.encodeproject.org/files/ENCFF588VIM/@@download/ENCFF588VIM.bam hg19 released mild to moderate bottlenecking ENCFF787QAB bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 100 ENCFF134VGP, ENCFF160TXM, ENCFF807MUK 4302623716 ENCODE Processing Pipeline 83041f12e18e655ab0fd492bc4eea113 https://www.encodeproject.org/files/ENCFF787QAB/@@download/ENCFF787QAB.bam hg19 released mild to moderate bottlenecking ENCFF222DTT bigWig signal p-value ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF581ZJL, ENCFF588VIM 1145373959 ENCODE Processing Pipeline 83c578d022fcf8954f4ddaa573c4d1e8 https://www.encodeproject.org/files/ENCFF222DTT/@@download/ENCFF222DTT.bigWig hg19 released mild to moderate bottlenecking ENCFF759CQR bigWig signal p-value ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF581ZJL, ENCFF787QAB 1254949865 ENCODE Processing Pipeline d0e444a31636336f4eab2dfdb3b7bfab https://www.encodeproject.org/files/ENCFF759CQR/@@download/ENCFF759CQR.bigWig hg19 released mild to moderate bottlenecking ENCFF259AMJ bigWig signal p-value ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF581ZJL, ENCFF588VIM, ENCFF787QAB 1555811963 ENCODE Processing Pipeline 510d465e8b843a332ff131eaced62dfb https://www.encodeproject.org/files/ENCFF259AMJ/@@download/ENCFF259AMJ.bigWig hg19 released mild to moderate bottlenecking ENCFF774RBG bigWig fold change over control ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF581ZJL, ENCFF588VIM 1098087174 ENCODE Processing Pipeline 8093e037ce311e9927eff377aad977cc https://www.encodeproject.org/files/ENCFF774RBG/@@download/ENCFF774RBG.bigWig hg19 released mild to moderate bottlenecking ENCFF975KUX bigWig fold change over control ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF581ZJL, ENCFF787QAB 1240702201 ENCODE Processing Pipeline e89d2864e7fbf5049250540c14aea596 https://www.encodeproject.org/files/ENCFF975KUX/@@download/ENCFF975KUX.bigWig hg19 released mild to moderate bottlenecking ENCFF856RTE bigWig fold change over control ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF581ZJL, ENCFF588VIM, ENCFF787QAB 1693394426 ENCODE Processing Pipeline 45ac991c6687d0ba9f8e4a625830624f https://www.encodeproject.org/files/ENCFF856RTE/@@download/ENCFF856RTE.bigWig hg19 released mild to moderate bottlenecking ENCFF051PEB bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF581ZJL, ENCFF588VIM 6977902 ENCODE Processing Pipeline 46cb8d9c3077842332aab8b6a0696bd2 https://www.encodeproject.org/files/ENCFF051PEB/@@download/ENCFF051PEB.bed.gz hg19 released mild to moderate bottlenecking ENCFF299WDT bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF581ZJL, ENCFF787QAB 7053427 ENCODE Processing Pipeline f2d0976e6d84a7e40f3e8275aa373a62 https://www.encodeproject.org/files/ENCFF299WDT/@@download/ENCFF299WDT.bed.gz hg19 released mild to moderate bottlenecking ENCFF759MGA bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF581ZJL, ENCFF588VIM, ENCFF787QAB 7277439 ENCODE Processing Pipeline 3c067f04d3a2c030d65e7af2da6a4c92 https://www.encodeproject.org/files/ENCFF759MGA/@@download/ENCFF759MGA.bed.gz hg19 released mild to moderate bottlenecking ENCFF266LTF bigBed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF759MGA 12974870 ENCODE Processing Pipeline 409c534260ea22174b995dacb10e6c87 https://www.encodeproject.org/files/ENCFF266LTF/@@download/ENCFF266LTF.bigBed hg19 released mild to moderate bottlenecking ENCFF129XVM bigBed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF051PEB 13182166 ENCODE Processing Pipeline f72ccc0d78623f84724317ab95a780f3 https://www.encodeproject.org/files/ENCFF129XVM/@@download/ENCFF129XVM.bigBed hg19 released mild to moderate bottlenecking ENCFF584LLO bigBed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF299WDT 13101976 ENCODE Processing Pipeline 1a3c440bb956869c8ccc4a9d556b4364 https://www.encodeproject.org/files/ENCFF584LLO/@@download/ENCFF584LLO.bigBed hg19 released mild to moderate bottlenecking ENCFF209YTE bed narrowPeak conservative idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF051PEB, ENCFF299WDT, ENCFF759MGA 352149 ENCODE Processing Pipeline 3447cd4fda35616b6cfce2420fd5cd14 https://www.encodeproject.org/files/ENCFF209YTE/@@download/ENCFF209YTE.bed.gz hg19 released mild to moderate bottlenecking ENCFF599CPT bigBed narrowPeak conservative idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF209YTE 728559 ENCODE Processing Pipeline 6be5c39ea0533718107a68713ee4b7bc https://www.encodeproject.org/files/ENCFF599CPT/@@download/ENCFF599CPT.bigBed hg19 released mild to moderate bottlenecking ENCFF874QUM bed narrowPeak optimal idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF051PEB, ENCFF299WDT, ENCFF759MGA 486014 ENCODE Processing Pipeline 75a755f8a4bc844744a9df818b13c184 https://www.encodeproject.org/files/ENCFF874QUM/@@download/ENCFF874QUM.bed.gz hg19 released mild to moderate bottlenecking ENCFF280TFB bigBed narrowPeak optimal idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF874QUM 938890 ENCODE Processing Pipeline eb91fdf6c3d6f0157cfbe4b8b0e4f8c2 https://www.encodeproject.org/files/ENCFF280TFB/@@download/ENCFF280TFB.bigBed hg19 released mild to moderate bottlenecking ENCFF689TUR bam unfiltered alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 100 ENCFF197ETF, ENCFF608EHV, ENCFF643CGH 5217740920 ENCODE Processing Pipeline 58faf16ca78991d2e59ecd1186502eab https://www.encodeproject.org/files/ENCFF689TUR/@@download/ENCFF689TUR.bam GRCh38 released mild to moderate bottlenecking ENCFF306KNJ bam unfiltered alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 100 ENCFF134VGP, ENCFF160TXM, ENCFF643CGH 5946424415 ENCODE Processing Pipeline 004eb7189ee47d0ccc14af9f6e77b480 https://www.encodeproject.org/files/ENCFF306KNJ/@@download/ENCFF306KNJ.bam GRCh38 released mild to moderate bottlenecking ENCFF138PZX bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 100 ENCFF197ETF, ENCFF608EHV, ENCFF643CGH 3684165028 ENCODE Processing Pipeline ee2c90a9173fe7270ad877b9399b5813 https://www.encodeproject.org/files/ENCFF138PZX/@@download/ENCFF138PZX.bam GRCh38 released mild to moderate bottlenecking ENCFF039QUZ bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 100 ENCFF134VGP, ENCFF160TXM, ENCFF643CGH 4305189649 ENCODE Processing Pipeline d2779d2c2f0a6640633f45e4772ba07d https://www.encodeproject.org/files/ENCFF039QUZ/@@download/ENCFF039QUZ.bam GRCh38 released mild to moderate bottlenecking ENCFF137LMQ bigWig signal p-value ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF138PZX, ENCFF910IKB 1153838121 ENCODE Processing Pipeline 21016492416f576c69759701919ece03 https://www.encodeproject.org/files/ENCFF137LMQ/@@download/ENCFF137LMQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF276RJE bigWig signal p-value ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF039QUZ, ENCFF910IKB 1143190193 ENCODE Processing Pipeline cae2efc3e0d2824074ece48f13261d0f https://www.encodeproject.org/files/ENCFF276RJE/@@download/ENCFF276RJE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF104MUM bigWig signal p-value ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF039QUZ, ENCFF138PZX, ENCFF910IKB 1592711636 ENCODE Processing Pipeline 3e2d40d08f40c0e0310e0ecd4e0c2a02 https://www.encodeproject.org/files/ENCFF104MUM/@@download/ENCFF104MUM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF064UXO bigWig fold change over control ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF138PZX, ENCFF910IKB 1103285598 ENCODE Processing Pipeline 36940b6a5e79ce5b35975379360cb5ff https://www.encodeproject.org/files/ENCFF064UXO/@@download/ENCFF064UXO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF910MJT bigWig fold change over control ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF039QUZ, ENCFF910IKB 1242769048 ENCODE Processing Pipeline 1816a8826cbae57d38d8f53be5ae9219 https://www.encodeproject.org/files/ENCFF910MJT/@@download/ENCFF910MJT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF791ETT bigWig fold change over control ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF039QUZ, ENCFF138PZX, ENCFF910IKB 1726710495 ENCODE Processing Pipeline c8a0db504c917d0838787105b35b46ed https://www.encodeproject.org/files/ENCFF791ETT/@@download/ENCFF791ETT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF642XCG bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF138PZX, ENCFF910IKB 6875366 ENCODE Processing Pipeline 63c52e4cf17d7d2ed917de66914e03f1 https://www.encodeproject.org/files/ENCFF642XCG/@@download/ENCFF642XCG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF828OPT bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF039QUZ, ENCFF910IKB 6964913 ENCODE Processing Pipeline 1226c3f3c64130f5d8028877de748813 https://www.encodeproject.org/files/ENCFF828OPT/@@download/ENCFF828OPT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF444GLG bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF039QUZ, ENCFF138PZX, ENCFF910IKB 7234514 ENCODE Processing Pipeline 4e752d4222efb03cb2f7096f86827769 https://www.encodeproject.org/files/ENCFF444GLG/@@download/ENCFF444GLG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF470WYV bigBed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF642XCG 13179405 ENCODE Processing Pipeline 3e9fcffdcd444d3c3d378130e45d611a https://www.encodeproject.org/files/ENCFF470WYV/@@download/ENCFF470WYV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF468DHY bigBed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF828OPT 13091816 ENCODE Processing Pipeline 778f1f79360dfe9bc530b16bbb4502fa https://www.encodeproject.org/files/ENCFF468DHY/@@download/ENCFF468DHY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF242CMO bigBed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF444GLG 12955408 ENCODE Processing Pipeline 2ffe5452aa56f1c3889fa20f52d85003 https://www.encodeproject.org/files/ENCFF242CMO/@@download/ENCFF242CMO.bigBed GRCh38 released mild to moderate bottlenecking ENCFF259WDV bed narrowPeak conservative idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF444GLG, ENCFF642XCG, ENCFF828OPT 343276 ENCODE Processing Pipeline 27ca242a548e4a1c705fa329ea00e07b https://www.encodeproject.org/files/ENCFF259WDV/@@download/ENCFF259WDV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF962CZX bigBed narrowPeak conservative idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF259WDV 721533 ENCODE Processing Pipeline a106945403ca895d3166a3e29ddc119e https://www.encodeproject.org/files/ENCFF962CZX/@@download/ENCFF962CZX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF180TUM bed narrowPeak optimal idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF444GLG, ENCFF642XCG, ENCFF828OPT 474250 ENCODE Processing Pipeline c6a01e42d9542587c329c4ba60a2e61a https://www.encodeproject.org/files/ENCFF180TUM/@@download/ENCFF180TUM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF512GTM bigBed narrowPeak optimal idr thresholded peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF180TUM 928245 ENCODE Processing Pipeline e7da7f0a28b15558a52e02f6b4364c54 https://www.encodeproject.org/files/ENCFF512GTM/@@download/ENCFF512GTM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF674QUX fastq reads ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF384EGA 1964388359 Michael Snyder, Stanford bbcd6aac8e273d314d4f31ad082453f8 https://www.encodeproject.org/files/ENCFF674QUX/@@download/ENCFF674QUX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ archived mild to moderate bottlenecking, inconsistent platforms ENCFF439DZE fastq reads ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF456ASW 4178843492 Michael Snyder, Stanford fe48a666c957eafc72a0a903c8fd3343 SRA:SRR6214402 https://www.encodeproject.org/files/ENCFF439DZE/@@download/ENCFF439DZE.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, inconsistent platforms ENCFF384EGA fastq reads ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF674QUX 1911627950 Michael Snyder, Stanford 752b29fd3e5433f26a8f9b7b0e888979 https://www.encodeproject.org/files/ENCFF384EGA/@@download/ENCFF384EGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ archived mild to moderate bottlenecking, inconsistent platforms ENCFF456ASW fastq reads ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF439DZE 4558822289 Michael Snyder, Stanford ef8957e2870e422c0074fa097e53309a SRA:SRR6214402 https://www.encodeproject.org/files/ENCFF456ASW/@@download/ENCFF456ASW.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, inconsistent platforms ENCFF534ZOY fastq reads ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF077ONG 4615312010 Michael Snyder, Stanford c140e239a48a9866ceeeab2eb9c54558 SRA:SRR6214401 https://www.encodeproject.org/files/ENCFF534ZOY/@@download/ENCFF534ZOY.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, inconsistent platforms ENCFF077ONG fastq reads ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF534ZOY 4776637410 Michael Snyder, Stanford 738b3a2ce82e55140683b32fb26e2e2e SRA:SRR6214401 https://www.encodeproject.org/files/ENCFF077ONG/@@download/ENCFF077ONG.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, inconsistent platforms ENCFF753EXC bam unfiltered alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 100 ENCFF439DZE, ENCFF456ASW, ENCFF643CGH 7878571169 ENCODE Processing Pipeline d9b8d2e4c2e6cb2a7a9b5441fb973316 https://www.encodeproject.org/files/ENCFF753EXC/@@download/ENCFF753EXC.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF212AKE bam unfiltered alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 100 ENCFF077ONG, ENCFF534ZOY, ENCFF643CGH 8179518209 ENCODE Processing Pipeline 7f8378b2b61d51dad10b3ee39ad9448c https://www.encodeproject.org/files/ENCFF212AKE/@@download/ENCFF212AKE.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF059AYM bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 100 ENCFF439DZE, ENCFF456ASW, ENCFF643CGH 6049847380 ENCODE Processing Pipeline 4337146fcc2e400a5e372efcd5b63d05 https://www.encodeproject.org/files/ENCFF059AYM/@@download/ENCFF059AYM.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF272DYC bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 100 ENCFF077ONG, ENCFF534ZOY, ENCFF643CGH 6570215360 ENCODE Processing Pipeline 2d7b758fd2df7431b2e8a35364dec584 https://www.encodeproject.org/files/ENCFF272DYC/@@download/ENCFF272DYC.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF666QTO bigWig signal p-value ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF272DYC, ENCFF712WXB, ENCFF790TAN 2102465732 ENCODE Processing Pipeline d7ac168a84bd7942066813f515644a07 https://www.encodeproject.org/files/ENCFF666QTO/@@download/ENCFF666QTO.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF751NIG bigWig signal p-value ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF059AYM, ENCFF272DYC, ENCFF712WXB, ENCFF790TAN 2379512931 ENCODE Processing Pipeline 7e341f9ef1d123709f0dbd09194c00ca https://www.encodeproject.org/files/ENCFF751NIG/@@download/ENCFF751NIG.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF327WBZ bigWig fold change over control ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF272DYC, ENCFF712WXB, ENCFF790TAN 2312227102 ENCODE Processing Pipeline 762ae4ce845b3d7ca3d3e192b268257e https://www.encodeproject.org/files/ENCFF327WBZ/@@download/ENCFF327WBZ.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF906PBS bigWig signal p-value ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF059AYM, ENCFF712WXB 1538694505 ENCODE Processing Pipeline dc971b8a8efec787f6a06ae5317add40 https://www.encodeproject.org/files/ENCFF906PBS/@@download/ENCFF906PBS.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF964NQM bigWig fold change over control ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF059AYM, ENCFF712WXB 1810212701 ENCODE Processing Pipeline e3f21b07b1e10c6ddd925a5fe2d8185f https://www.encodeproject.org/files/ENCFF964NQM/@@download/ENCFF964NQM.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF031VXJ bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF272DYC, ENCFF712WXB, ENCFF790TAN 7263292 ENCODE Processing Pipeline d1bdc5d490ce703dfa9de0a157634557 https://www.encodeproject.org/files/ENCFF031VXJ/@@download/ENCFF031VXJ.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF630OGT bigWig fold change over control ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF059AYM, ENCFF272DYC, ENCFF712WXB, ENCFF790TAN 4073499080 ENCODE Processing Pipeline 21eaaa0e47371653f4b7c95b33f07a7f https://www.encodeproject.org/files/ENCFF630OGT/@@download/ENCFF630OGT.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF654XFG bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF059AYM, ENCFF272DYC, ENCFF712WXB, ENCFF790TAN 7305530 ENCODE Processing Pipeline 24169255eb1bd2e283828e56dbde1ad2 https://www.encodeproject.org/files/ENCFF654XFG/@@download/ENCFF654XFG.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF485LQW bigBed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF654XFG 13616035 ENCODE Processing Pipeline ff2e124b817949a7cbf60cbce7906604 https://www.encodeproject.org/files/ENCFF485LQW/@@download/ENCFF485LQW.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF510BZJ bigBed narrowPeak conservative idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF132TXF 1708709 ENCODE Processing Pipeline 4f2cbfe32f872410d2811a85b767b32a https://www.encodeproject.org/files/ENCFF510BZJ/@@download/ENCFF510BZJ.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF241DCR bigBed narrowPeak optimal idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF092TVM 1753119 ENCODE Processing Pipeline d7c019f17899f38f0506a60bc7420d3a https://www.encodeproject.org/files/ENCFF241DCR/@@download/ENCFF241DCR.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF981FUV bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF059AYM, ENCFF712WXB 7228242 ENCODE Processing Pipeline ed52d70ebbde88f412f5b8f450323df3 https://www.encodeproject.org/files/ENCFF981FUV/@@download/ENCFF981FUV.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF340DRC bigBed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF031VXJ 13521854 ENCODE Processing Pipeline 64f4ffb76bc4f3c63d539d92f60474d4 https://www.encodeproject.org/files/ENCFF340DRC/@@download/ENCFF340DRC.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF092TVM bed narrowPeak optimal idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF031VXJ, ENCFF419RSJ, ENCFF654XFG, ENCFF981FUV 878508 ENCODE Processing Pipeline 755fcf39e0513f266110edb9abe198a7 https://www.encodeproject.org/files/ENCFF092TVM/@@download/ENCFF092TVM.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF848BPH bigBed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF981FUV 13484100 ENCODE Processing Pipeline d3b6d716198b6151cee46d254c14e3a1 https://www.encodeproject.org/files/ENCFF848BPH/@@download/ENCFF848BPH.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF132TXF bed narrowPeak conservative idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF031VXJ, ENCFF419RSJ, ENCFF654XFG, ENCFF981FUV 859248 ENCODE Processing Pipeline 358dace8ca2c640240859ceca2c46c93 https://www.encodeproject.org/files/ENCFF132TXF/@@download/ENCFF132TXF.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF042TGG bam unfiltered alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 100 ENCFF439DZE, ENCFF456ASW, ENCFF807MUK 7873307965 ENCODE Processing Pipeline d375dbfdacec491f1760ec25faa349e0 https://www.encodeproject.org/files/ENCFF042TGG/@@download/ENCFF042TGG.bam hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF198HNS bam unfiltered alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 100 ENCFF077ONG, ENCFF534ZOY, ENCFF807MUK 8175213433 ENCODE Processing Pipeline de202e06675c09c59dd4b970ea6bb51f https://www.encodeproject.org/files/ENCFF198HNS/@@download/ENCFF198HNS.bam hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF822VWX bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 100 ENCFF077ONG, ENCFF534ZOY, ENCFF807MUK 6564647407 ENCODE Processing Pipeline ae9670144d9b059741ae2c603efefaf4 https://www.encodeproject.org/files/ENCFF822VWX/@@download/ENCFF822VWX.bam hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF753LGT bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 100 ENCFF439DZE, ENCFF456ASW, ENCFF807MUK 6045758828 ENCODE Processing Pipeline c687fa85d13cd3c7ff3cb34812e582ea https://www.encodeproject.org/files/ENCFF753LGT/@@download/ENCFF753LGT.bam hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF533CFJ bigWig signal p-value ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF160VXC, ENCFF822VWX, ENCFF834TUP 2209426966 ENCODE Processing Pipeline d265b6b1dc24c16f38ff4abf53f662b3 https://www.encodeproject.org/files/ENCFF533CFJ/@@download/ENCFF533CFJ.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF124BLC bigWig signal p-value ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF753LGT, ENCFF834TUP 1541945908 ENCODE Processing Pipeline 8e0d65d2bc1ba1f2ed31f7bfc03088fa https://www.encodeproject.org/files/ENCFF124BLC/@@download/ENCFF124BLC.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF164UUU bigWig fold change over control ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF160VXC, ENCFF822VWX, ENCFF834TUP 2277864175 ENCODE Processing Pipeline 87940451aaa1fb47d2e933c9d69b28f7 https://www.encodeproject.org/files/ENCFF164UUU/@@download/ENCFF164UUU.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF292SNP bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF753LGT, ENCFF834TUP 7252193 ENCODE Processing Pipeline e75f3e53f1fb259d8bc04167166d255b https://www.encodeproject.org/files/ENCFF292SNP/@@download/ENCFF292SNP.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF034XOR bigWig signal p-value ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF160VXC, ENCFF753LGT, ENCFF822VWX, ENCFF834TUP 2367289060 ENCODE Processing Pipeline 57e8ea61147acb3b9c7bc92237f11539 https://www.encodeproject.org/files/ENCFF034XOR/@@download/ENCFF034XOR.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF625QNJ bigWig fold change over control ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF753LGT, ENCFF834TUP 1808232930 ENCODE Processing Pipeline 62db91c156cbbeadce3f8811ee5e1db0 https://www.encodeproject.org/files/ENCFF625QNJ/@@download/ENCFF625QNJ.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF072WWL bed narrowPeak conservative idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF292SNP, ENCFF351DKB, ENCFF754CMK 855707 ENCODE Processing Pipeline 5e181fde622ec273b1a5685c383e368e https://www.encodeproject.org/files/ENCFF072WWL/@@download/ENCFF072WWL.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF351DKB bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF160VXC, ENCFF822VWX, ENCFF834TUP 7258939 ENCODE Processing Pipeline 96bc24b8a37c141356d2d757d60d26ec https://www.encodeproject.org/files/ENCFF351DKB/@@download/ENCFF351DKB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF370ENX bed narrowPeak optimal idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF292SNP, ENCFF351DKB, ENCFF754CMK 878417 ENCODE Processing Pipeline c5c8948cb0e3434da4fa620f09ef9812 https://www.encodeproject.org/files/ENCFF370ENX/@@download/ENCFF370ENX.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF285OCI bigBed narrowPeak optimal idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF370ENX 1746388 ENCODE Processing Pipeline 88b3e04cb54e3913f3ed6d05dc9e4ca5 https://www.encodeproject.org/files/ENCFF285OCI/@@download/ENCFF285OCI.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF474SAL bigWig fold change over control ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF160VXC, ENCFF753LGT, ENCFF822VWX, ENCFF834TUP 4047090936 ENCODE Processing Pipeline e0c9d0da9f78cb55e31a01bdadccc464 https://www.encodeproject.org/files/ENCFF474SAL/@@download/ENCFF474SAL.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF393VLZ bigBed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF754CMK 13603456 ENCODE Processing Pipeline 3ebd700d1d4d5dafbea66dc4fb1977c9 https://www.encodeproject.org/files/ENCFF393VLZ/@@download/ENCFF393VLZ.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF232EYF bigBed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF351DKB 13508844 ENCODE Processing Pipeline 591f128ca61cdc0996cb4d4ba6ee4896 https://www.encodeproject.org/files/ENCFF232EYF/@@download/ENCFF232EYF.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF292MFU bigBed narrowPeak conservative idr thresholded peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF072WWL 1701239 ENCODE Processing Pipeline 1fc8f0b461eba03d7dfbac90132ab723 https://www.encodeproject.org/files/ENCFF292MFU/@@download/ENCFF292MFU.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF754CMK bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF160VXC, ENCFF753LGT, ENCFF822VWX, ENCFF834TUP 7301117 ENCODE Processing Pipeline 6f2bd3fb9c8d0f1fe300daa205cb1e3f https://www.encodeproject.org/files/ENCFF754CMK/@@download/ENCFF754CMK.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF496MEB bigBed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF292SNP 13510173 ENCODE Processing Pipeline e3cdb9e1c842061f1fd1eca34afd7dac https://www.encodeproject.org/files/ENCFF496MEB/@@download/ENCFF496MEB.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF342ZEM bam unfiltered alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF778OSN, ENCFF807MUK, ENCFF839XCL 5513957931 ENCODE Processing Pipeline 451d9aa687a04b521653c9382b2379c2 https://www.encodeproject.org/files/ENCFF342ZEM/@@download/ENCFF342ZEM.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF683GQF bam unfiltered alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF365NLR, ENCFF467AXX, ENCFF807MUK 3919331441 ENCODE Processing Pipeline c896d1d65ca3d54f687e9a87afc5cb24 https://www.encodeproject.org/files/ENCFF683GQF/@@download/ENCFF683GQF.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF778OSN fastq reads ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF839XCL 2584438597 Michael Snyder, Stanford 226487bb80f2970c9ccefb903ce777da https://www.encodeproject.org/files/ENCFF778OSN/@@download/ENCFF778OSN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF365NLR fastq reads ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF467AXX 1791927726 Michael Snyder, Stanford ff68a9429832f530606d9f54b0fd25e9 https://www.encodeproject.org/files/ENCFF365NLR/@@download/ENCFF365NLR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF839XCL fastq reads ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF778OSN 2579180783 Michael Snyder, Stanford c58f060bf75352d2d3329848622a1d6f https://www.encodeproject.org/files/ENCFF839XCL/@@download/ENCFF839XCL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF467AXX fastq reads ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF365NLR 1830702410 Michael Snyder, Stanford 2b2b938b8f9d6298dd8495196630d11f https://www.encodeproject.org/files/ENCFF467AXX/@@download/ENCFF467AXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF019NMV bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF365NLR, ENCFF467AXX, ENCFF807MUK 3187410712 ENCODE Processing Pipeline 9dbc98e34ccaf4cbeda6170c4ebc6a6d https://www.encodeproject.org/files/ENCFF019NMV/@@download/ENCFF019NMV.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF534OTQ bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF778OSN, ENCFF807MUK, ENCFF839XCL 4309000571 ENCODE Processing Pipeline bf6bfeb397e075b574b319a076657f91 https://www.encodeproject.org/files/ENCFF534OTQ/@@download/ENCFF534OTQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF638UXS bigWig signal p-value ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF019NMV, ENCFF581ZJL 1043229163 ENCODE Processing Pipeline 1be3eacca503a5bc0ee3bb978f39be7f https://www.encodeproject.org/files/ENCFF638UXS/@@download/ENCFF638UXS.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF360VXM bigWig signal p-value ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF534OTQ 974285466 ENCODE Processing Pipeline 163b5e91b5ccfc6db30ac8714dfebc28 https://www.encodeproject.org/files/ENCFF360VXM/@@download/ENCFF360VXM.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF567AHN bigWig fold change over control ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF019NMV, ENCFF581ZJL 1037717396 ENCODE Processing Pipeline c1eac8b22f2c316a1ac675e0ea192118 https://www.encodeproject.org/files/ENCFF567AHN/@@download/ENCFF567AHN.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF173DED bigWig signal p-value ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF019NMV, ENCFF051LWI, ENCFF534OTQ, ENCFF581ZJL 1755482153 ENCODE Processing Pipeline 28a514e63e0169e7a2b9add06a44ad00 https://www.encodeproject.org/files/ENCFF173DED/@@download/ENCFF173DED.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF058POD bigWig fold change over control ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF534OTQ 1106235906 ENCODE Processing Pipeline 0477208635e8231a2a56a86b7539b56b https://www.encodeproject.org/files/ENCFF058POD/@@download/ENCFF058POD.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF092WDH bigWig fold change over control ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF019NMV, ENCFF051LWI, ENCFF534OTQ, ENCFF581ZJL 1994724545 ENCODE Processing Pipeline 00e150f230581c40f43f0e9707c19925 https://www.encodeproject.org/files/ENCFF092WDH/@@download/ENCFF092WDH.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF904YUH bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF534OTQ 6830870 ENCODE Processing Pipeline 6d5890f88e3ef7e3c6dc6be88c11c67e https://www.encodeproject.org/files/ENCFF904YUH/@@download/ENCFF904YUH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF133EYO bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF019NMV, ENCFF581ZJL 6905870 ENCODE Processing Pipeline 593a7b157fdd9fe7c6683d3eb14892e2 https://www.encodeproject.org/files/ENCFF133EYO/@@download/ENCFF133EYO.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF696BJA bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF019NMV, ENCFF051LWI, ENCFF534OTQ, ENCFF581ZJL 7168536 ENCODE Processing Pipeline 52b97caf9cbb78cdb0d7fdba098bd89c https://www.encodeproject.org/files/ENCFF696BJA/@@download/ENCFF696BJA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF455EBE bigBed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF133EYO 13000608 ENCODE Processing Pipeline 9bdf7db06d5518ca8ded7f6ffb6b7392 https://www.encodeproject.org/files/ENCFF455EBE/@@download/ENCFF455EBE.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF314SYK bigBed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF904YUH 13154188 ENCODE Processing Pipeline 79af54551c34fdd10deee57ee6e68cc0 https://www.encodeproject.org/files/ENCFF314SYK/@@download/ENCFF314SYK.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF267SLP bigBed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF696BJA 12742000 ENCODE Processing Pipeline d4a8864124623c74717e08faf6b82674 https://www.encodeproject.org/files/ENCFF267SLP/@@download/ENCFF267SLP.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF953GCB bam unfiltered alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF365NLR, ENCFF467AXX, ENCFF643CGH 3922274008 ENCODE Processing Pipeline c314cbb4c798d9e08751933e2e21d8c4 https://www.encodeproject.org/files/ENCFF953GCB/@@download/ENCFF953GCB.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF034WKA bam unfiltered alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF778OSN, ENCFF839XCL 5518282520 ENCODE Processing Pipeline 16186a99abb660714d20710295dfdefd https://www.encodeproject.org/files/ENCFF034WKA/@@download/ENCFF034WKA.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF589IBH bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF365NLR, ENCFF467AXX, ENCFF643CGH 3189099028 ENCODE Processing Pipeline c27a1b8845a06f204df59b688087cf1a https://www.encodeproject.org/files/ENCFF589IBH/@@download/ENCFF589IBH.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF514FRG bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF778OSN, ENCFF839XCL 4310261140 ENCODE Processing Pipeline 82c301fc09270d64843d400ad1239efa https://www.encodeproject.org/files/ENCFF514FRG/@@download/ENCFF514FRG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF250DJH bigWig signal p-value ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF589IBH, ENCFF910IKB 1146427661 ENCODE Processing Pipeline 3a408991f085ea02e6f629124e983882 https://www.encodeproject.org/files/ENCFF250DJH/@@download/ENCFF250DJH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF697GKI bigWig signal p-value ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF514FRG 1120334128 ENCODE Processing Pipeline 6e5b1efa7ef31cebbda3d77b10edf233 https://www.encodeproject.org/files/ENCFF697GKI/@@download/ENCFF697GKI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF009GXA bigWig signal p-value ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF514FRG, ENCFF589IBH, ENCFF910IKB 1755562541 ENCODE Processing Pipeline 0f582a4b6055e83d62407cd9c0a65fe5 https://www.encodeproject.org/files/ENCFF009GXA/@@download/ENCFF009GXA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF887PXB bigWig fold change over control ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF589IBH, ENCFF910IKB 1033853711 ENCODE Processing Pipeline fc5436ecdec2fa9ee31a1163f42464ff https://www.encodeproject.org/files/ENCFF887PXB/@@download/ENCFF887PXB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF298KPW bigWig fold change over control ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF514FRG 1106479341 ENCODE Processing Pipeline dde5d84a0a920cc25bb1a358150e4d07 https://www.encodeproject.org/files/ENCFF298KPW/@@download/ENCFF298KPW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF690TMV bigWig fold change over control ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF514FRG, ENCFF589IBH, ENCFF910IKB 1993182317 ENCODE Processing Pipeline 1cba01a40f58f0aaf1b1f68b89a6dcf2 https://www.encodeproject.org/files/ENCFF690TMV/@@download/ENCFF690TMV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF177KFF bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF589IBH, ENCFF910IKB 6814523 ENCODE Processing Pipeline c7dbcfc724f6af6561f2fdde66b02ff7 https://www.encodeproject.org/files/ENCFF177KFF/@@download/ENCFF177KFF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF094YJF bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF514FRG 6736637 ENCODE Processing Pipeline 516e557d7e6fd9f3fcb4c5ac01cd861b https://www.encodeproject.org/files/ENCFF094YJF/@@download/ENCFF094YJF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF389AUY bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF514FRG, ENCFF589IBH, ENCFF910IKB 7231205 ENCODE Processing Pipeline 511a3ebe1e5f35a0dc18b0edde663351 https://www.encodeproject.org/files/ENCFF389AUY/@@download/ENCFF389AUY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF616YZS bigBed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF177KFF 13010446 ENCODE Processing Pipeline 699111d2a02f71709c8826cffe86cf85 https://www.encodeproject.org/files/ENCFF616YZS/@@download/ENCFF616YZS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF684XKZ bigBed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF094YJF 13152092 ENCODE Processing Pipeline edfc6fdfaa9bea1a32c979b3900cf46a https://www.encodeproject.org/files/ENCFF684XKZ/@@download/ENCFF684XKZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF857RSM bigBed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF389AUY 12824893 ENCODE Processing Pipeline 61c1645784881fc2b937bd443c343deb https://www.encodeproject.org/files/ENCFF857RSM/@@download/ENCFF857RSM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF008DYZ bed narrowPeak conservative idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF094YJF, ENCFF177KFF, ENCFF389AUY, ENCFF419RSJ 186045 ENCODE Processing Pipeline d933fc53fe424e90df9e400c0ed1adc4 https://www.encodeproject.org/files/ENCFF008DYZ/@@download/ENCFF008DYZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF723YBP bigBed narrowPeak conservative idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF008DYZ 455726 ENCODE Processing Pipeline 939ea660f1d39a79019ff7d05c66f3bb https://www.encodeproject.org/files/ENCFF723YBP/@@download/ENCFF723YBP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF171WWF bed narrowPeak optimal idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF094YJF, ENCFF177KFF, ENCFF389AUY, ENCFF419RSJ 237876 ENCODE Processing Pipeline 6ba2a09f16d1dc921809d48f0d085edd https://www.encodeproject.org/files/ENCFF171WWF/@@download/ENCFF171WWF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF316AYA bigBed narrowPeak optimal idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF171WWF 542770 ENCODE Processing Pipeline 727b8c5d40c4840fada167b182701d6d https://www.encodeproject.org/files/ENCFF316AYA/@@download/ENCFF316AYA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF749OIM bed narrowPeak conservative idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF133EYO, ENCFF696BJA, ENCFF904YUH 153517 ENCODE Processing Pipeline 1f88b53e6adef05457ef6e27111ab839 https://www.encodeproject.org/files/ENCFF749OIM/@@download/ENCFF749OIM.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF925DJG bed narrowPeak optimal idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF133EYO, ENCFF696BJA, ENCFF904YUH 199330 ENCODE Processing Pipeline a54bfc70ca37fae47890b441013320dd https://www.encodeproject.org/files/ENCFF925DJG/@@download/ENCFF925DJG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF799TTD bigBed narrowPeak optimal idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF925DJG 393161 ENCODE Processing Pipeline 79549d9988d96bb109cec3759e34dc42 https://www.encodeproject.org/files/ENCFF799TTD/@@download/ENCFF799TTD.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF809XKT bigBed narrowPeak conservative idr thresholded peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF749OIM 331951 ENCODE Processing Pipeline 4dd28fa9de34eab7875965e526a74e5f https://www.encodeproject.org/files/ENCFF809XKT/@@download/ENCFF809XKT.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF643PYI bam unfiltered alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF073VHT, ENCFF564LFT, ENCFF807MUK 1902735418 ENCODE Processing Pipeline 00243d5415118c956eee9981195635b3 https://www.encodeproject.org/files/ENCFF643PYI/@@download/ENCFF643PYI.bam hg19 released missing genetic modification characterization ENCFF915FMM bam unfiltered alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF253BVP, ENCFF649VGU, ENCFF807MUK 1599190117 ENCODE Processing Pipeline de1da9f49f920253705b0831e3e3f8f5 https://www.encodeproject.org/files/ENCFF915FMM/@@download/ENCFF915FMM.bam hg19 released missing genetic modification characterization ENCFF253BVP fastq reads ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 600089269 Kevin White, UChicago f7eb690a0f4336cf279686b036345c97 SRA:SRR6214169 https://www.encodeproject.org/files/ENCFF253BVP/@@download/ENCFF253BVP.fastq.gz Illumina HiSeq 2500 /files/ENCFF422MHT/, /files/ENCFF564OXD/ released missing genetic modification characterization ENCFF564LFT fastq reads ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 763922049 Kevin White, UChicago 044a3d3330d7098681762b437e705baa SRA:SRR6214167 https://www.encodeproject.org/files/ENCFF564LFT/@@download/ENCFF564LFT.fastq.gz Illumina HiSeq 2500 /files/ENCFF422MHT/, /files/ENCFF564OXD/ released missing genetic modification characterization ENCFF073VHT fastq reads ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 973939984 Kevin White, UChicago 1c7d02591bb54d1d2c05ff8a62a5845a SRA:SRR6214168 https://www.encodeproject.org/files/ENCFF073VHT/@@download/ENCFF073VHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF422MHT/, /files/ENCFF564OXD/ released missing genetic modification characterization ENCFF649VGU fastq reads ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 839622902 Kevin White, UChicago 68f1dde6e2135eec2d0e5633d4b2a4c3 SRA:SRR6214170 https://www.encodeproject.org/files/ENCFF649VGU/@@download/ENCFF649VGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF422MHT/, /files/ENCFF564OXD/ released missing genetic modification characterization ENCFF775ZRK bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF253BVP, ENCFF649VGU, ENCFF807MUK 1272637203 ENCODE Processing Pipeline 4e3893e7191613f3d25b40dd4e3da005 https://www.encodeproject.org/files/ENCFF775ZRK/@@download/ENCFF775ZRK.bam hg19 released missing genetic modification characterization ENCFF702YSS bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF073VHT, ENCFF564LFT, ENCFF807MUK 1503614871 ENCODE Processing Pipeline fb0efae89bafbaf3776018ea30a13a6f https://www.encodeproject.org/files/ENCFF702YSS/@@download/ENCFF702YSS.bam hg19 released missing genetic modification characterization ENCFF817UBQ bigWig signal p-value ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF702YSS, ENCFF891YJS 519346193 ENCODE Processing Pipeline 9f88c125765128d9705b41a1edeb2ee1 https://www.encodeproject.org/files/ENCFF817UBQ/@@download/ENCFF817UBQ.bigWig hg19 released missing genetic modification characterization ENCFF117KZQ bigWig signal p-value ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF775ZRK, ENCFF891YJS 516932797 ENCODE Processing Pipeline ad169b53f69d9adb3ca5c71264262d83 https://www.encodeproject.org/files/ENCFF117KZQ/@@download/ENCFF117KZQ.bigWig hg19 released missing genetic modification characterization ENCFF921NSY bigWig signal p-value ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF702YSS, ENCFF775ZRK, ENCFF891YJS 508673087 ENCODE Processing Pipeline 4524a07c2b32a1c14ed45dd829301b85 https://www.encodeproject.org/files/ENCFF921NSY/@@download/ENCFF921NSY.bigWig hg19 released missing genetic modification characterization ENCFF644UTC bigWig fold change over control ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF775ZRK, ENCFF891YJS 531614910 ENCODE Processing Pipeline 40ac93901b04eb1cf2c9abe720ec5484 https://www.encodeproject.org/files/ENCFF644UTC/@@download/ENCFF644UTC.bigWig hg19 released missing genetic modification characterization ENCFF342URP bigWig fold change over control ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF702YSS, ENCFF891YJS 606901157 ENCODE Processing Pipeline 0669a7d49ddfbc0c36b161ab9a402934 https://www.encodeproject.org/files/ENCFF342URP/@@download/ENCFF342URP.bigWig hg19 released missing genetic modification characterization ENCFF439ZHX bigWig fold change over control ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF702YSS, ENCFF775ZRK, ENCFF891YJS 902259121 ENCODE Processing Pipeline 55b0a1fc3643bf70be4f1055235405b6 https://www.encodeproject.org/files/ENCFF439ZHX/@@download/ENCFF439ZHX.bigWig hg19 released missing genetic modification characterization ENCFF985HFC bigBed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF241QBV 13202589 ENCODE Processing Pipeline 324c8456f43d9161b79a2557efc3838a https://www.encodeproject.org/files/ENCFF985HFC/@@download/ENCFF985HFC.bigBed hg19 released missing genetic modification characterization ENCFF241QBV bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF775ZRK, ENCFF891YJS 6254539 ENCODE Processing Pipeline c7fb7fb7e8669a0f4968aeb0331a514c https://www.encodeproject.org/files/ENCFF241QBV/@@download/ENCFF241QBV.bed.gz hg19 released missing genetic modification characterization ENCFF074NKQ bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF702YSS, ENCFF891YJS 6763727 ENCODE Processing Pipeline 4fcc50d833fbd8658c629457a34785d8 https://www.encodeproject.org/files/ENCFF074NKQ/@@download/ENCFF074NKQ.bed.gz hg19 released missing genetic modification characterization ENCFF882VDD bigBed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF074NKQ 12973850 ENCODE Processing Pipeline ebe1470fdf4fdb5eaf4bdd657f8907b3 https://www.encodeproject.org/files/ENCFF882VDD/@@download/ENCFF882VDD.bigBed hg19 released missing genetic modification characterization ENCFF769RKU bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF702YSS, ENCFF775ZRK, ENCFF891YJS 7077032 ENCODE Processing Pipeline 67c5bc0bfa084f885cf4b8f972beb88e https://www.encodeproject.org/files/ENCFF769RKU/@@download/ENCFF769RKU.bed.gz hg19 released missing genetic modification characterization ENCFF221JWP bigBed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF769RKU 12915645 ENCODE Processing Pipeline 5500d65992a89289605d8aae47322f31 https://www.encodeproject.org/files/ENCFF221JWP/@@download/ENCFF221JWP.bigBed hg19 released missing genetic modification characterization ENCFF994XOL bam unfiltered alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF253BVP, ENCFF643CGH, ENCFF649VGU 1604761827 ENCODE Processing Pipeline 418cbdcbe3d4d8a236b45a706deb6aea https://www.encodeproject.org/files/ENCFF994XOL/@@download/ENCFF994XOL.bam GRCh38 released missing genetic modification characterization ENCFF245TDR bam unfiltered alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF073VHT, ENCFF564LFT, ENCFF643CGH 1908589045 ENCODE Processing Pipeline 4732668a56671ab5b03bf61cfae31eae https://www.encodeproject.org/files/ENCFF245TDR/@@download/ENCFF245TDR.bam GRCh38 released missing genetic modification characterization ENCFF251EVS bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF253BVP, ENCFF643CGH, ENCFF649VGU 1272061373 ENCODE Processing Pipeline f724c6fee7cb64da7fce256a7c52a66a https://www.encodeproject.org/files/ENCFF251EVS/@@download/ENCFF251EVS.bam GRCh38 released missing genetic modification characterization ENCFF619SRD bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF073VHT, ENCFF564LFT, ENCFF643CGH 1502995676 ENCODE Processing Pipeline d4a8bec12dcdfa84026fbbc5a591496f https://www.encodeproject.org/files/ENCFF619SRD/@@download/ENCFF619SRD.bam GRCh38 released missing genetic modification characterization ENCFF582RKM bigWig signal p-value ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF251EVS, ENCFF383YOE 520759103 ENCODE Processing Pipeline 96ca93a20017280f16da6ff08447373a https://www.encodeproject.org/files/ENCFF582RKM/@@download/ENCFF582RKM.bigWig GRCh38 released missing genetic modification characterization ENCFF738OCM bigWig signal p-value ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF383YOE, ENCFF619SRD 526758348 ENCODE Processing Pipeline 404cdeb1818a61865cf5ef736d5dddc8 https://www.encodeproject.org/files/ENCFF738OCM/@@download/ENCFF738OCM.bigWig GRCh38 released missing genetic modification characterization ENCFF020INB bigWig signal p-value ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF251EVS, ENCFF383YOE, ENCFF619SRD 514045023 ENCODE Processing Pipeline ae204c4809ea8948b1e67558904adf7f https://www.encodeproject.org/files/ENCFF020INB/@@download/ENCFF020INB.bigWig GRCh38 released missing genetic modification characterization ENCFF912FBW bigWig fold change over control ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF251EVS, ENCFF383YOE 536719500 ENCODE Processing Pipeline 303ba7660b4728bdfec2a587edfbe2e7 https://www.encodeproject.org/files/ENCFF912FBW/@@download/ENCFF912FBW.bigWig GRCh38 released missing genetic modification characterization ENCFF956MOS bigWig fold change over control ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF383YOE, ENCFF619SRD 611252888 ENCODE Processing Pipeline 1ecc94e0625a649f3c4b2b0a2615899c https://www.encodeproject.org/files/ENCFF956MOS/@@download/ENCFF956MOS.bigWig GRCh38 released missing genetic modification characterization ENCFF223LQK bigWig fold change over control ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF251EVS, ENCFF383YOE, ENCFF619SRD 905925011 ENCODE Processing Pipeline fbae13aa0f255983090bc11b894e53a9 https://www.encodeproject.org/files/ENCFF223LQK/@@download/ENCFF223LQK.bigWig GRCh38 released missing genetic modification characterization ENCFF076JAN bigBed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF377MIJ 12960501 ENCODE Processing Pipeline f4d7ddcd76b4342a0b4abedfb9c61f2a https://www.encodeproject.org/files/ENCFF076JAN/@@download/ENCFF076JAN.bigBed GRCh38 released missing genetic modification characterization ENCFF585YJH bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF251EVS, ENCFF383YOE, ENCFF619SRD 6980123 ENCODE Processing Pipeline b25ae3e587fa1b3b695b5a26d8d5895d https://www.encodeproject.org/files/ENCFF585YJH/@@download/ENCFF585YJH.bed.gz GRCh38 released missing genetic modification characterization ENCFF556XZO bigBed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF585YJH 12920090 ENCODE Processing Pipeline 19d867825fdb762ea4225b70b78e9710 https://www.encodeproject.org/files/ENCFF556XZO/@@download/ENCFF556XZO.bigBed GRCh38 released missing genetic modification characterization ENCFF486DBE bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF251EVS, ENCFF383YOE 6067115 ENCODE Processing Pipeline 6b84b48b88aa8a9c5c12e65cdbb59469 https://www.encodeproject.org/files/ENCFF486DBE/@@download/ENCFF486DBE.bed.gz GRCh38 released missing genetic modification characterization ENCFF377MIJ bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF383YOE, ENCFF619SRD 6589744 ENCODE Processing Pipeline 0a96540658c319201364b42b128d28cb https://www.encodeproject.org/files/ENCFF377MIJ/@@download/ENCFF377MIJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF647OPT bigBed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF486DBE 13176911 ENCODE Processing Pipeline f767d038ab8c1133d7ce5e20d649f944 https://www.encodeproject.org/files/ENCFF647OPT/@@download/ENCFF647OPT.bigBed GRCh38 released missing genetic modification characterization ENCFF066UQP bed narrowPeak conservative idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF377MIJ, ENCFF419RSJ, ENCFF486DBE, ENCFF585YJH 366230 ENCODE Processing Pipeline c8b54cbeda8665b5f65875b54ca91909 https://www.encodeproject.org/files/ENCFF066UQP/@@download/ENCFF066UQP.bed.gz GRCh38 released missing genetic modification characterization ENCFF356HGO bigBed narrowPeak conservative idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF066UQP 865261 ENCODE Processing Pipeline 49288d96ea3226669ac7831375487d95 https://www.encodeproject.org/files/ENCFF356HGO/@@download/ENCFF356HGO.bigBed GRCh38 released missing genetic modification characterization ENCFF256CVB bed narrowPeak optimal idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF377MIJ, ENCFF419RSJ, ENCFF486DBE, ENCFF585YJH 368974 ENCODE Processing Pipeline d1a0dc47db40aa571af027ea0b93d037 https://www.encodeproject.org/files/ENCFF256CVB/@@download/ENCFF256CVB.bed.gz GRCh38 released missing genetic modification characterization ENCFF646JBO bigBed narrowPeak optimal idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF256CVB 871887 ENCODE Processing Pipeline e740795eb10776d14a776167ef5fdfef https://www.encodeproject.org/files/ENCFF646JBO/@@download/ENCFF646JBO.bigBed GRCh38 released missing genetic modification characterization ENCFF140VIF bed narrowPeak conservative idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF074NKQ, ENCFF241QBV, ENCFF769RKU 308977 ENCODE Processing Pipeline 3d0685831059d13fc3b7a4f661551f7a https://www.encodeproject.org/files/ENCFF140VIF/@@download/ENCFF140VIF.bed.gz hg19 released missing genetic modification characterization ENCFF889KVH bigBed narrowPeak conservative idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF140VIF 635183 ENCODE Processing Pipeline 2139b58bdaab1274c3c6e1c75022912b https://www.encodeproject.org/files/ENCFF889KVH/@@download/ENCFF889KVH.bigBed hg19 released missing genetic modification characterization ENCFF526EEI bed narrowPeak optimal idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF074NKQ, ENCFF241QBV, ENCFF769RKU 313782 ENCODE Processing Pipeline 1f4cf632566898df354da40c0e111751 https://www.encodeproject.org/files/ENCFF526EEI/@@download/ENCFF526EEI.bed.gz hg19 released missing genetic modification characterization ENCFF243YSE bigBed narrowPeak optimal idr thresholded peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF526EEI 642193 ENCODE Processing Pipeline 82cf13b4c1186eab882473aef1fa7f56 https://www.encodeproject.org/files/ENCFF243YSE/@@download/ENCFF243YSE.bigBed hg19 released missing genetic modification characterization ENCFF950AJU bam unfiltered alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 100 ENCFF156ZUZ, ENCFF738CWY, ENCFF807MUK 6050518085 ENCODE Processing Pipeline 923ec029ef64bc19b8466d9ce2491cb8 https://www.encodeproject.org/files/ENCFF950AJU/@@download/ENCFF950AJU.bam hg19 released ENCFF791WUT bam unfiltered alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 100 ENCFF245IWG, ENCFF807MUK, ENCFF936LDI 5618509576 ENCODE Processing Pipeline aea8a4757c019cff1730aca9c9511365 https://www.encodeproject.org/files/ENCFF791WUT/@@download/ENCFF791WUT.bam hg19 released ENCFF738CWY fastq reads ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 1 100 paired-ended 2 ENCFF156ZUZ 2827658762 Michael Snyder, Stanford 01744537d7c93de247c69af06d2e871a SRA:SRR5112376 https://www.encodeproject.org/files/ENCFF738CWY/@@download/ENCFF738CWY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF156ZUZ fastq reads ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 1 100 paired-ended 1 ENCFF738CWY 2792492278 Michael Snyder, Stanford c69dddcc596186f50bfa2b9391c0865a SRA:SRR5112376 https://www.encodeproject.org/files/ENCFF156ZUZ/@@download/ENCFF156ZUZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF245IWG fastq reads ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 1 100 paired-ended 2 ENCFF936LDI 2633279556 Michael Snyder, Stanford abc83f9791f5a7de9c68c8895f27ab0c SRA:SRR5112377 https://www.encodeproject.org/files/ENCFF245IWG/@@download/ENCFF245IWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF936LDI fastq reads ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 1 100 paired-ended 1 ENCFF245IWG 2600485994 Michael Snyder, Stanford 4d410388bfa8d663da93854f52f7f91d SRA:SRR5112377 https://www.encodeproject.org/files/ENCFF936LDI/@@download/ENCFF936LDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF777WTJ bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 100 ENCFF245IWG, ENCFF807MUK, ENCFF936LDI 4719294160 ENCODE Processing Pipeline 740b648878c780dd1513e1e3acac4251 https://www.encodeproject.org/files/ENCFF777WTJ/@@download/ENCFF777WTJ.bam hg19 released ENCFF561GSY bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 100 ENCFF156ZUZ, ENCFF738CWY, ENCFF807MUK 5115111229 ENCODE Processing Pipeline 6df891433469722061588ac80d2ad030 https://www.encodeproject.org/files/ENCFF561GSY/@@download/ENCFF561GSY.bam hg19 released ENCFF938BKY bigWig signal p-value ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF561GSY, ENCFF581ZJL 1105336266 ENCODE Processing Pipeline b136c69b73f6eef5a665b55c78e641ce https://www.encodeproject.org/files/ENCFF938BKY/@@download/ENCFF938BKY.bigWig hg19 released ENCFF666AOJ bigWig signal p-value ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF051LWI, ENCFF777WTJ 1015489867 ENCODE Processing Pipeline 02c90d7109ee3262e8d1741b2b4becb7 https://www.encodeproject.org/files/ENCFF666AOJ/@@download/ENCFF666AOJ.bigWig hg19 released ENCFF995KTX bigWig signal p-value ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF051LWI, ENCFF561GSY, ENCFF581ZJL, ENCFF777WTJ 1892288441 ENCODE Processing Pipeline be63c5e9b20101263929e816a31ae7cc https://www.encodeproject.org/files/ENCFF995KTX/@@download/ENCFF995KTX.bigWig hg19 released ENCFF255XPV bigWig fold change over control ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF561GSY, ENCFF581ZJL 1299881859 ENCODE Processing Pipeline 09d308409fd4dbe983521f349f19598b https://www.encodeproject.org/files/ENCFF255XPV/@@download/ENCFF255XPV.bigWig hg19 released ENCFF910PLM bigWig fold change over control ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF051LWI, ENCFF777WTJ 1146995421 ENCODE Processing Pipeline aa79c7981db99d7fd1c31993b67a8966 https://www.encodeproject.org/files/ENCFF910PLM/@@download/ENCFF910PLM.bigWig hg19 released ENCFF715OCK bigWig fold change over control ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF051LWI, ENCFF561GSY, ENCFF581ZJL, ENCFF777WTJ 2196544317 ENCODE Processing Pipeline 46e4b962b001a3b71d313e82605fe6c5 https://www.encodeproject.org/files/ENCFF715OCK/@@download/ENCFF715OCK.bigWig hg19 released ENCFF165OLG bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF561GSY, ENCFF581ZJL 7194804 ENCODE Processing Pipeline 3ee7173d67a0ae3c64c577669ba2e544 https://www.encodeproject.org/files/ENCFF165OLG/@@download/ENCFF165OLG.bed.gz hg19 released ENCFF320JKZ bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF051LWI, ENCFF777WTJ 7163528 ENCODE Processing Pipeline abde4ca054c2bc93c58be11b81372073 https://www.encodeproject.org/files/ENCFF320JKZ/@@download/ENCFF320JKZ.bed.gz hg19 released ENCFF519QZC bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF051LWI, ENCFF561GSY, ENCFF581ZJL, ENCFF777WTJ 7143401 ENCODE Processing Pipeline b28be6209e576830c06ae1bea8a3ed77 https://www.encodeproject.org/files/ENCFF519QZC/@@download/ENCFF519QZC.bed.gz hg19 released ENCFF901AIL bigBed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF165OLG 12932855 ENCODE Processing Pipeline 3806e13b73ca204d73232e3c797d2cc2 https://www.encodeproject.org/files/ENCFF901AIL/@@download/ENCFF901AIL.bigBed hg19 released ENCFF230ZWS bigBed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF519QZC 12811670 ENCODE Processing Pipeline 8e6ca00fd9a6d90110420eb736ada868 https://www.encodeproject.org/files/ENCFF230ZWS/@@download/ENCFF230ZWS.bigBed hg19 released ENCFF998CUC bigBed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF320JKZ 13014549 ENCODE Processing Pipeline be2cca2fc51b64dfc223cb287c6304e4 https://www.encodeproject.org/files/ENCFF998CUC/@@download/ENCFF998CUC.bigBed hg19 released ENCFF766NVP bed narrowPeak conservative idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF001TDO, ENCFF165OLG, ENCFF320JKZ, ENCFF519QZC 758293 ENCODE Processing Pipeline 544fd964a347a9bea2097f2a3602f350 https://www.encodeproject.org/files/ENCFF766NVP/@@download/ENCFF766NVP.bed.gz hg19 released ENCFF802SZP bigBed narrowPeak conservative idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF766NVP 1714663 ENCODE Processing Pipeline deb9bf1b674cf4169ba8e855bd337bb5 https://www.encodeproject.org/files/ENCFF802SZP/@@download/ENCFF802SZP.bigBed hg19 released ENCFF886VSU bed narrowPeak optimal idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF001TDO, ENCFF165OLG, ENCFF320JKZ, ENCFF519QZC 870116 ENCODE Processing Pipeline 75a920f51d6077f2f65ffc7fadadfe2e https://www.encodeproject.org/files/ENCFF886VSU/@@download/ENCFF886VSU.bed.gz hg19 released ENCFF486YIL bigBed narrowPeak optimal idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF886VSU 1919377 ENCODE Processing Pipeline f7c9283424c2657146e70bc0254a981b https://www.encodeproject.org/files/ENCFF486YIL/@@download/ENCFF486YIL.bigBed hg19 released ENCFF818AVS bam unfiltered alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 100 ENCFF245IWG, ENCFF643CGH, ENCFF936LDI 5622708566 ENCODE Processing Pipeline 1c73f6b993b6dc5cd4782553c31211b0 https://www.encodeproject.org/files/ENCFF818AVS/@@download/ENCFF818AVS.bam GRCh38 released ENCFF693BGB bam unfiltered alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 100 ENCFF156ZUZ, ENCFF643CGH, ENCFF738CWY 6056186829 ENCODE Processing Pipeline 50cbf8015aa57efa2a9e6c977f292e5e https://www.encodeproject.org/files/ENCFF693BGB/@@download/ENCFF693BGB.bam GRCh38 released ENCFF016KRJ bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 100 ENCFF245IWG, ENCFF643CGH, ENCFF936LDI 4724238592 ENCODE Processing Pipeline f8697a3f8718ebb15e9d8f2231f2e9ae https://www.encodeproject.org/files/ENCFF016KRJ/@@download/ENCFF016KRJ.bam GRCh38 released ENCFF880SVB bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 100 ENCFF156ZUZ, ENCFF643CGH, ENCFF738CWY 5121163613 ENCODE Processing Pipeline e2dac7da1d99ca5560778b56c01c5c89 https://www.encodeproject.org/files/ENCFF880SVB/@@download/ENCFF880SVB.bam GRCh38 released ENCFF645OOV bigWig signal p-value ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF880SVB, ENCFF910IKB 1300828033 ENCODE Processing Pipeline 3cb603138dfab6783bcd60045eaaac31 https://www.encodeproject.org/files/ENCFF645OOV/@@download/ENCFF645OOV.bigWig GRCh38 released ENCFF218DSZ bigWig signal p-value ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF016KRJ, ENCFF227IZS 1133976728 ENCODE Processing Pipeline 8123b522bbfc239057d8f321773b619a https://www.encodeproject.org/files/ENCFF218DSZ/@@download/ENCFF218DSZ.bigWig GRCh38 released ENCFF194IPJ bigWig signal p-value ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF016KRJ, ENCFF227IZS, ENCFF880SVB, ENCFF910IKB 1743794093 ENCODE Processing Pipeline c7d90404826fb8dd8c39e09eeae8aa03 https://www.encodeproject.org/files/ENCFF194IPJ/@@download/ENCFF194IPJ.bigWig GRCh38 released ENCFF056CQY bigWig fold change over control ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF880SVB, ENCFF910IKB 1291104295 ENCODE Processing Pipeline 4ecd8173c32fb9f4c9c79a263f6addfa https://www.encodeproject.org/files/ENCFF056CQY/@@download/ENCFF056CQY.bigWig GRCh38 released ENCFF027GZW bigWig fold change over control ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF016KRJ, ENCFF227IZS 1146888103 ENCODE Processing Pipeline 67b8b72d7afb683a8d8284c9564477c9 https://www.encodeproject.org/files/ENCFF027GZW/@@download/ENCFF027GZW.bigWig GRCh38 released ENCFF741DZJ bigWig fold change over control ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF016KRJ, ENCFF227IZS, ENCFF880SVB, ENCFF910IKB 2151923983 ENCODE Processing Pipeline 97eda91fe911bbfc32d79c11f5dc72bd https://www.encodeproject.org/files/ENCFF741DZJ/@@download/ENCFF741DZJ.bigWig GRCh38 released ENCFF094JFK bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF016KRJ, ENCFF227IZS 7032330 ENCODE Processing Pipeline 9a29279856a44890c37faf2473456c0d https://www.encodeproject.org/files/ENCFF094JFK/@@download/ENCFF094JFK.bed.gz GRCh38 released ENCFF164XFI bigBed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF094JFK 12913212 ENCODE Processing Pipeline bd085bcced2121126eccf7e385906eb2 https://www.encodeproject.org/files/ENCFF164XFI/@@download/ENCFF164XFI.bigBed GRCh38 released ENCFF674ELX bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF880SVB, ENCFF910IKB 7142588 ENCODE Processing Pipeline 8edc8dd336c1d89969c7bb7a9406cd57 https://www.encodeproject.org/files/ENCFF674ELX/@@download/ENCFF674ELX.bed.gz GRCh38 released ENCFF004CAC bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF016KRJ, ENCFF227IZS, ENCFF880SVB, ENCFF910IKB 7139471 ENCODE Processing Pipeline e0c6ae7d13bd527fcf7f1ff344362747 https://www.encodeproject.org/files/ENCFF004CAC/@@download/ENCFF004CAC.bed.gz GRCh38 released ENCFF601TEI bigBed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF674ELX 12900647 ENCODE Processing Pipeline b1930914225e4a6397ab9d43331fa4f5 https://www.encodeproject.org/files/ENCFF601TEI/@@download/ENCFF601TEI.bigBed GRCh38 released ENCFF619ZVX bigBed narrowPeak conservative idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF589RYN 1715421 ENCODE Processing Pipeline 51041bf46e3b0d645132f26ab75f06c9 https://www.encodeproject.org/files/ENCFF619ZVX/@@download/ENCFF619ZVX.bigBed GRCh38 released ENCFF927BOI bigBed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF004CAC 12814005 ENCODE Processing Pipeline 8d7467c71f4da48bbb9eec94276ff0a0 https://www.encodeproject.org/files/ENCFF927BOI/@@download/ENCFF927BOI.bigBed GRCh38 released ENCFF589RYN bed narrowPeak conservative idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF004CAC, ENCFF094JFK, ENCFF419RSJ, ENCFF674ELX 756706 ENCODE Processing Pipeline 998f12640990aa5f14f31b18b05e58d8 https://www.encodeproject.org/files/ENCFF589RYN/@@download/ENCFF589RYN.bed.gz GRCh38 released ENCFF259GZX bigBed narrowPeak optimal idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF785BTP 1923409 ENCODE Processing Pipeline 2c53faeb2f643f77643061f108c20578 https://www.encodeproject.org/files/ENCFF259GZX/@@download/ENCFF259GZX.bigBed GRCh38 released ENCFF785BTP bed narrowPeak optimal idr thresholded peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF004CAC, ENCFF094JFK, ENCFF419RSJ, ENCFF674ELX 869837 ENCODE Processing Pipeline 858e8076f6d72cab574d40906762dc53 https://www.encodeproject.org/files/ENCFF785BTP/@@download/ENCFF785BTP.bed.gz GRCh38 released ENCFF408JLD bam unfiltered alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 100 ENCFF121ACO, ENCFF250AVG, ENCFF807MUK 6450766557 ENCODE Processing Pipeline d775ab39078add6bc772ace879811e06 https://www.encodeproject.org/files/ENCFF408JLD/@@download/ENCFF408JLD.bam hg19 released ENCFF871FHN bam unfiltered alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 100 ENCFF640FTH, ENCFF807MUK, ENCFF909ZLD 6208155976 ENCODE Processing Pipeline f484dd435762e2fa4a4b5e897693865d https://www.encodeproject.org/files/ENCFF871FHN/@@download/ENCFF871FHN.bam hg19 released ENCFF250AVG fastq reads ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF121ACO 2931823045 Michael Snyder, Stanford 5b402356a3795993e6bdc80febd3de96 SRA:SRR5111777 https://www.encodeproject.org/files/ENCFF250AVG/@@download/ENCFF250AVG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF121ACO fastq reads ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF250AVG 2979421944 Michael Snyder, Stanford 8dbba304aa32ae5181e98ddbc6c51e5b SRA:SRR5111777 https://www.encodeproject.org/files/ENCFF121ACO/@@download/ENCFF121ACO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF909ZLD fastq reads ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF640FTH 2861324304 Michael Snyder, Stanford e825da0c92a58c43526a8d6385e1bb6c SRA:SRR5111776 https://www.encodeproject.org/files/ENCFF909ZLD/@@download/ENCFF909ZLD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF640FTH fastq reads ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF909ZLD 2813474986 Michael Snyder, Stanford 37a8282345c50f744397042513f3f484 SRA:SRR5111776 https://www.encodeproject.org/files/ENCFF640FTH/@@download/ENCFF640FTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF477POF bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 100 ENCFF640FTH, ENCFF807MUK, ENCFF909ZLD 5369230695 ENCODE Processing Pipeline 3c78b00b850224652880b3d77f6c6c06 https://www.encodeproject.org/files/ENCFF477POF/@@download/ENCFF477POF.bam hg19 released ENCFF044ZGL bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 100 ENCFF121ACO, ENCFF250AVG, ENCFF807MUK 5618933179 ENCODE Processing Pipeline 562eac24a8607653fe8159053458b24d https://www.encodeproject.org/files/ENCFF044ZGL/@@download/ENCFF044ZGL.bam hg19 released ENCFF261CFW bigWig signal p-value ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF477POF, ENCFF581ZJL 1383926783 ENCODE Processing Pipeline 0845f5342bd7f781d63689dcc74ad4d2 https://www.encodeproject.org/files/ENCFF261CFW/@@download/ENCFF261CFW.bigWig hg19 released ENCFF366UUO bigWig signal p-value ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF044ZGL, ENCFF581ZJL 1082547957 ENCODE Processing Pipeline 173d54f80d51635f90ab087be2412c0f https://www.encodeproject.org/files/ENCFF366UUO/@@download/ENCFF366UUO.bigWig hg19 released ENCFF355LQH bigWig signal p-value ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF044ZGL, ENCFF477POF, ENCFF581ZJL 1594281074 ENCODE Processing Pipeline 6418af1b27b34b0293e084f5d03089e4 https://www.encodeproject.org/files/ENCFF355LQH/@@download/ENCFF355LQH.bigWig hg19 released ENCFF184STM bigWig fold change over control ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF477POF, ENCFF581ZJL 1354759569 ENCODE Processing Pipeline dab5e87a12dae8066e1ec819debbd476 https://www.encodeproject.org/files/ENCFF184STM/@@download/ENCFF184STM.bigWig hg19 released ENCFF061AYO bigWig fold change over control ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF044ZGL, ENCFF581ZJL 1408917994 ENCODE Processing Pipeline 9cdf0cc5b86ea02f0289ddcafcec2041 https://www.encodeproject.org/files/ENCFF061AYO/@@download/ENCFF061AYO.bigWig hg19 released ENCFF028PQJ bigWig fold change over control ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF044ZGL, ENCFF477POF, ENCFF581ZJL 2012055396 ENCODE Processing Pipeline a9996dfc38996d6998b8bada9b8769cc https://www.encodeproject.org/files/ENCFF028PQJ/@@download/ENCFF028PQJ.bigWig hg19 released ENCFF298ANN bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF477POF, ENCFF581ZJL 6668549 ENCODE Processing Pipeline fe70ba76f997927a58faceef760078aa https://www.encodeproject.org/files/ENCFF298ANN/@@download/ENCFF298ANN.bed.gz hg19 released ENCFF165WWF bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF044ZGL, ENCFF477POF, ENCFF581ZJL 7146513 ENCODE Processing Pipeline b3641340d51f917d043e9927a3333d40 https://www.encodeproject.org/files/ENCFF165WWF/@@download/ENCFF165WWF.bed.gz hg19 released ENCFF232KWI bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF044ZGL, ENCFF581ZJL 6647154 ENCODE Processing Pipeline e5d1fa786643f62b7da74009b2bb1f10 https://www.encodeproject.org/files/ENCFF232KWI/@@download/ENCFF232KWI.bed.gz hg19 released ENCFF225ESW bigBed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF298ANN 10992070 ENCODE Processing Pipeline 96fc72784029df3d000465f91b74f293 https://www.encodeproject.org/files/ENCFF225ESW/@@download/ENCFF225ESW.bigBed hg19 released ENCFF220FGA bigBed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF165WWF 10797981 ENCODE Processing Pipeline 04a5d5e1c6a4cf919c97e4d85740a5cc https://www.encodeproject.org/files/ENCFF220FGA/@@download/ENCFF220FGA.bigBed hg19 released ENCFF793SGC bigBed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF232KWI 10996079 ENCODE Processing Pipeline 18d55f8ff99e5241cf93085303275018 https://www.encodeproject.org/files/ENCFF793SGC/@@download/ENCFF793SGC.bigBed hg19 released ENCFF552GJB bigBed narrowPeak conservative idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF005JRY 112151 ENCODE Processing Pipeline a3e4c6f2b512dd72fbeb9ac661e64c54 https://www.encodeproject.org/files/ENCFF552GJB/@@download/ENCFF552GJB.bigBed hg19 released ENCFF005JRY bed narrowPeak conservative idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF165WWF, ENCFF232KWI, ENCFF298ANN 23371 ENCODE Processing Pipeline c85968bec0af33dc24640b4fc9df21cc https://www.encodeproject.org/files/ENCFF005JRY/@@download/ENCFF005JRY.bed.gz hg19 released ENCFF278ONE bed narrowPeak optimal idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF165WWF, ENCFF232KWI, ENCFF298ANN 42864 ENCODE Processing Pipeline f001f8218fe092df94f9780e7635d9ad https://www.encodeproject.org/files/ENCFF278ONE/@@download/ENCFF278ONE.bed.gz hg19 released ENCFF663ESN bigBed narrowPeak optimal idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF278ONE 133527 ENCODE Processing Pipeline ea4760dba08f07f7ccca5174bf6da11a https://www.encodeproject.org/files/ENCFF663ESN/@@download/ENCFF663ESN.bigBed hg19 released ENCFF853ARE bam unfiltered alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 100 ENCFF121ACO, ENCFF250AVG, ENCFF643CGH 6459266090 ENCODE Processing Pipeline e1a5cf283f88459dd26ab0592a4dd9bc https://www.encodeproject.org/files/ENCFF853ARE/@@download/ENCFF853ARE.bam GRCh38 released ENCFF512QAY bam unfiltered alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 100 ENCFF640FTH, ENCFF643CGH, ENCFF909ZLD 6217656139 ENCODE Processing Pipeline 01af78e9db129759cda10b313b0aaa8d https://www.encodeproject.org/files/ENCFF512QAY/@@download/ENCFF512QAY.bam GRCh38 released ENCFF548AHK bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 100 ENCFF121ACO, ENCFF250AVG, ENCFF643CGH 5623323262 ENCODE Processing Pipeline 00dc0f654a02a86421b779c607fff0b3 https://www.encodeproject.org/files/ENCFF548AHK/@@download/ENCFF548AHK.bam GRCh38 released ENCFF995UTD bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 100 ENCFF640FTH, ENCFF643CGH, ENCFF909ZLD 5374974688 ENCODE Processing Pipeline 8ec98c581f861ae499a7c3cbd9c04557 https://www.encodeproject.org/files/ENCFF995UTD/@@download/ENCFF995UTD.bam GRCh38 released ENCFF815LSE bigWig signal p-value ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF910IKB, ENCFF995UTD 1316388610 ENCODE Processing Pipeline b937e796f1fef68ea968602a65e235ef https://www.encodeproject.org/files/ENCFF815LSE/@@download/ENCFF815LSE.bigWig GRCh38 released ENCFF262NRZ bigWig signal p-value ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF548AHK, ENCFF910IKB 1422606453 ENCODE Processing Pipeline 12b3a2e39427e89921bbfbcb8ae96cb1 https://www.encodeproject.org/files/ENCFF262NRZ/@@download/ENCFF262NRZ.bigWig GRCh38 released ENCFF591GIJ bigWig signal p-value ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF548AHK, ENCFF910IKB, ENCFF995UTD 1585076228 ENCODE Processing Pipeline 011b32db465373152219074c16308feb https://www.encodeproject.org/files/ENCFF591GIJ/@@download/ENCFF591GIJ.bigWig GRCh38 released ENCFF103EIF bigWig fold change over control ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF910IKB, ENCFF995UTD 1372247189 ENCODE Processing Pipeline 51e6f79b72215654981ee6ba64a74671 https://www.encodeproject.org/files/ENCFF103EIF/@@download/ENCFF103EIF.bigWig GRCh38 released ENCFF003FMA bigWig fold change over control ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF548AHK, ENCFF910IKB 1402356102 ENCODE Processing Pipeline c4a026745cb1cf1c396170d9a649ec7b https://www.encodeproject.org/files/ENCFF003FMA/@@download/ENCFF003FMA.bigWig GRCh38 released ENCFF951YWA bigWig fold change over control ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF548AHK, ENCFF910IKB, ENCFF995UTD 2005334697 ENCODE Processing Pipeline 1e1b6183743d7ba7d839a0e5bfdb6281 https://www.encodeproject.org/files/ENCFF951YWA/@@download/ENCFF951YWA.bigWig GRCh38 released ENCFF618NEQ bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF548AHK, ENCFF910IKB 6513507 ENCODE Processing Pipeline 6093ae718a44b3866293c9d0522c3aa7 https://www.encodeproject.org/files/ENCFF618NEQ/@@download/ENCFF618NEQ.bed.gz GRCh38 released ENCFF035VLB bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF548AHK, ENCFF910IKB, ENCFF995UTD 7111942 ENCODE Processing Pipeline e82224471ac284faa2ab20ce48e402a2 https://www.encodeproject.org/files/ENCFF035VLB/@@download/ENCFF035VLB.bed.gz GRCh38 released ENCFF426EZS bigBed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF618NEQ 11005436 ENCODE Processing Pipeline 1a3fbe0919ba3d26a2aaf1b35082731f https://www.encodeproject.org/files/ENCFF426EZS/@@download/ENCFF426EZS.bigBed GRCh38 released ENCFF366DIZ bigBed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF035VLB 10810112 ENCODE Processing Pipeline 636a7f20b4ce1271adb46bd774e3d89b https://www.encodeproject.org/files/ENCFF366DIZ/@@download/ENCFF366DIZ.bigBed GRCh38 released ENCFF240ALI bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF910IKB, ENCFF995UTD 6537629 ENCODE Processing Pipeline 66ac6d94bdf1cff5e17c256d03cc79d5 https://www.encodeproject.org/files/ENCFF240ALI/@@download/ENCFF240ALI.bed.gz GRCh38 released ENCFF250NHM bed narrowPeak conservative idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF035VLB, ENCFF240ALI, ENCFF419RSJ, ENCFF618NEQ 20033 ENCODE Processing Pipeline 635a90ee36c0f77beb100d2f6e9d0c15 https://www.encodeproject.org/files/ENCFF250NHM/@@download/ENCFF250NHM.bed.gz GRCh38 released ENCFF104WKM bigBed narrowPeak conservative idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF250NHM 96420 ENCODE Processing Pipeline 745ed7f3c28a163745bf5572b7242fb6 https://www.encodeproject.org/files/ENCFF104WKM/@@download/ENCFF104WKM.bigBed GRCh38 released ENCFF288ZRD bed narrowPeak optimal idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF035VLB, ENCFF240ALI, ENCFF419RSJ, ENCFF618NEQ 38961 ENCODE Processing Pipeline a857aa4b2e3800fd7500c4f91739f432 https://www.encodeproject.org/files/ENCFF288ZRD/@@download/ENCFF288ZRD.bed.gz GRCh38 released ENCFF975ANM bigBed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF240ALI 11011675 ENCODE Processing Pipeline 5fda0e0e0d5c93e1d0d081ce3a9a5b97 https://www.encodeproject.org/files/ENCFF975ANM/@@download/ENCFF975ANM.bigBed GRCh38 released ENCFF737TIX bigBed narrowPeak optimal idr thresholded peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF288ZRD 130613 ENCODE Processing Pipeline 489c537a5e3d6e6207410b88dea9b251 https://www.encodeproject.org/files/ENCFF737TIX/@@download/ENCFF737TIX.bigBed GRCh38 released ENCFF432HUY bam unfiltered alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF428TYZ, ENCFF678JFY, ENCFF807MUK 1814232081 ENCODE Processing Pipeline c7b19666789b432c31556b86d768cedd https://www.encodeproject.org/files/ENCFF432HUY/@@download/ENCFF432HUY.bam hg19 released control low read depth, missing genetic modification characterization ENCFF926JFS bam unfiltered alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF164RED, ENCFF272RDB, ENCFF807MUK 1444693738 ENCODE Processing Pipeline e265d8447bf0fcf13ff62d69224ef373 https://www.encodeproject.org/files/ENCFF926JFS/@@download/ENCFF926JFS.bam hg19 released control low read depth, missing genetic modification characterization ENCFF164RED fastq reads ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 771933212 Kevin White, UChicago 874087ad8c770b7034514e01d3bc5efb SRA:SRR6213615 https://www.encodeproject.org/files/ENCFF164RED/@@download/ENCFF164RED.fastq.gz Illumina HiSeq 2500 /files/ENCFF422UWG/ released control low read depth, missing genetic modification characterization ENCFF428TYZ fastq reads ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 832705246 Kevin White, UChicago 56cbe2ee47f57b98828ae536e5ae7bc7 SRA:SRR6213613 https://www.encodeproject.org/files/ENCFF428TYZ/@@download/ENCFF428TYZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF422UWG/ released control low read depth, missing genetic modification characterization ENCFF272RDB fastq reads ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 549895904 Kevin White, UChicago 1a53716734eecce485362609ff412f62 SRA:SRR6213616 https://www.encodeproject.org/files/ENCFF272RDB/@@download/ENCFF272RDB.fastq.gz Illumina HiSeq 2000 /files/ENCFF422UWG/ released control low read depth, missing genetic modification characterization ENCFF678JFY fastq reads ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 828146359 Kevin White, UChicago e49ab69fbe2684afa9d5c02178f97d7e SRA:SRR6213614 https://www.encodeproject.org/files/ENCFF678JFY/@@download/ENCFF678JFY.fastq.gz Illumina HiSeq 2500 /files/ENCFF422UWG/ released control low read depth, missing genetic modification characterization ENCFF845ZLZ bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF428TYZ, ENCFF678JFY, ENCFF807MUK 1417309669 ENCODE Processing Pipeline 33b09c9c8fd506d834c37d26c05d7663 https://www.encodeproject.org/files/ENCFF845ZLZ/@@download/ENCFF845ZLZ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF552USH bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF164RED, ENCFF272RDB, ENCFF807MUK 1106115991 ENCODE Processing Pipeline 27cadad3e64f800c7f0a1f66d91d7ced https://www.encodeproject.org/files/ENCFF552USH/@@download/ENCFF552USH.bam hg19 released control low read depth, missing genetic modification characterization ENCFF653QZA bigWig signal p-value ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF552USH, ENCFF577QBK 403406123 ENCODE Processing Pipeline 715115a5cf6b4184eb0efa844e6ce420 https://www.encodeproject.org/files/ENCFF653QZA/@@download/ENCFF653QZA.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF017ZBH bigWig signal p-value ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF577QBK, ENCFF845ZLZ 403147594 ENCODE Processing Pipeline 9bf6217b6b7797c92acec7366389b915 https://www.encodeproject.org/files/ENCFF017ZBH/@@download/ENCFF017ZBH.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF562GOA bigWig signal p-value ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF552USH, ENCFF577QBK, ENCFF845ZLZ 409242245 ENCODE Processing Pipeline b63e2eaf3b7cbf69194b90f8a35047ca https://www.encodeproject.org/files/ENCFF562GOA/@@download/ENCFF562GOA.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF607RCG bigWig fold change over control ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF552USH, ENCFF577QBK 477682674 ENCODE Processing Pipeline 67ef2b1ceb701011805b4e97658a2454 https://www.encodeproject.org/files/ENCFF607RCG/@@download/ENCFF607RCG.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF390FSE bigWig fold change over control ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF577QBK, ENCFF845ZLZ 555134764 ENCODE Processing Pipeline 8e123f58e042c7e4b0dfdd78bffc8f25 https://www.encodeproject.org/files/ENCFF390FSE/@@download/ENCFF390FSE.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF974CYT bigWig fold change over control ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF552USH, ENCFF577QBK, ENCFF845ZLZ 831836922 ENCODE Processing Pipeline 8e422e0fcb5e50588077d2e3c52a57d9 https://www.encodeproject.org/files/ENCFF974CYT/@@download/ENCFF974CYT.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF796SSH bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF552USH, ENCFF577QBK 6958561 ENCODE Processing Pipeline 8a9b82bc9d86cdea5b34591b1303d131 https://www.encodeproject.org/files/ENCFF796SSH/@@download/ENCFF796SSH.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF138CUL bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF552USH, ENCFF577QBK, ENCFF845ZLZ 7296018 ENCODE Processing Pipeline 9089567410de069c2ab8b031f9aabad5 https://www.encodeproject.org/files/ENCFF138CUL/@@download/ENCFF138CUL.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF513NXG bigBed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF796SSH 12299140 ENCODE Processing Pipeline e514001e050b79daf7c1331d72800f81 https://www.encodeproject.org/files/ENCFF513NXG/@@download/ENCFF513NXG.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF373TEW bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF577QBK, ENCFF845ZLZ 6929023 ENCODE Processing Pipeline 70ec6f6f31e08f34de4b50bd339f9dd7 https://www.encodeproject.org/files/ENCFF373TEW/@@download/ENCFF373TEW.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF528SDW bigBed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF373TEW 12655497 ENCODE Processing Pipeline 9309472d74fe53526845e0878150a0e6 https://www.encodeproject.org/files/ENCFF528SDW/@@download/ENCFF528SDW.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF270FKU bigBed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF138CUL 12443013 ENCODE Processing Pipeline f478d4c1dd3a4f3799bac29470b82895 https://www.encodeproject.org/files/ENCFF270FKU/@@download/ENCFF270FKU.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF518QRE bam unfiltered alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF164RED, ENCFF272RDB, ENCFF643CGH 1449057701 ENCODE Processing Pipeline 9a1de17c0820fb10b82cc559bd66bac9 https://www.encodeproject.org/files/ENCFF518QRE/@@download/ENCFF518QRE.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF581FUF bam unfiltered alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF428TYZ, ENCFF643CGH, ENCFF678JFY 1820695814 ENCODE Processing Pipeline 2dd296585bef5312b35690fceaa3f817 https://www.encodeproject.org/files/ENCFF581FUF/@@download/ENCFF581FUF.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF623YPH bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF164RED, ENCFF272RDB, ENCFF643CGH 1105625527 ENCODE Processing Pipeline b6a511acf45adaea89a41a162c94e068 https://www.encodeproject.org/files/ENCFF623YPH/@@download/ENCFF623YPH.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF106BHY bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF428TYZ, ENCFF643CGH, ENCFF678JFY 1416696061 ENCODE Processing Pipeline 1a62b40588cea4dd3df8f26e612510b6 https://www.encodeproject.org/files/ENCFF106BHY/@@download/ENCFF106BHY.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF752YQA bigWig signal p-value ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF093MXU, ENCFF106BHY 395475654 ENCODE Processing Pipeline b3f6fc02cd00a29b7601755248e48d94 https://www.encodeproject.org/files/ENCFF752YQA/@@download/ENCFF752YQA.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF012COQ bigWig signal p-value ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF093MXU, ENCFF623YPH 418973437 ENCODE Processing Pipeline 97da2d04390a56e4fa5c5a264a4aa08f https://www.encodeproject.org/files/ENCFF012COQ/@@download/ENCFF012COQ.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF782UZX bigWig signal p-value ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF093MXU, ENCFF106BHY, ENCFF623YPH 409032006 ENCODE Processing Pipeline 284d3791fcb332ae5bcd7ff916cd4b4b https://www.encodeproject.org/files/ENCFF782UZX/@@download/ENCFF782UZX.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF467BPQ bigWig fold change over control ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF093MXU, ENCFF623YPH 490533289 ENCODE Processing Pipeline 04fa9b881bde833b3053225cf65a739f https://www.encodeproject.org/files/ENCFF467BPQ/@@download/ENCFF467BPQ.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF023LDG bigWig fold change over control ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF093MXU, ENCFF106BHY 543576726 ENCODE Processing Pipeline 9099c69281c0b0c236579c1a54e89040 https://www.encodeproject.org/files/ENCFF023LDG/@@download/ENCFF023LDG.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF600BXX bigWig fold change over control ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF093MXU, ENCFF106BHY, ENCFF623YPH 828663877 ENCODE Processing Pipeline f3404964aca40109e8d0a89484d59273 https://www.encodeproject.org/files/ENCFF600BXX/@@download/ENCFF600BXX.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF455XEV bigBed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF524ZDS 12288763 ENCODE Processing Pipeline 510492881c4bbe21e746c73a191af2be https://www.encodeproject.org/files/ENCFF455XEV/@@download/ENCFF455XEV.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF992KZV bigBed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF379YGQ 12446093 ENCODE Processing Pipeline 9284ea049474101670ca0a1f792a6493 https://www.encodeproject.org/files/ENCFF992KZV/@@download/ENCFF992KZV.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF038KKT bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF093MXU, ENCFF106BHY 6757313 ENCODE Processing Pipeline da401500ae80663a4a0300b04f9cb17b https://www.encodeproject.org/files/ENCFF038KKT/@@download/ENCFF038KKT.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF524ZDS bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF093MXU, ENCFF623YPH 6831659 ENCODE Processing Pipeline 9e19bba4654b7bd5ecce706517fb17d3 https://www.encodeproject.org/files/ENCFF524ZDS/@@download/ENCFF524ZDS.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF379YGQ bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF093MXU, ENCFF106BHY, ENCFF623YPH 7230919 ENCODE Processing Pipeline 4307f31879c8d0528be68eea2255ae52 https://www.encodeproject.org/files/ENCFF379YGQ/@@download/ENCFF379YGQ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF779YWP bigBed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF038KKT 12659034 ENCODE Processing Pipeline 5b2e01612ba6af7230b43b19fdd753b4 https://www.encodeproject.org/files/ENCFF779YWP/@@download/ENCFF779YWP.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF775TPP bed narrowPeak optimal idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF038KKT, ENCFF379YGQ, ENCFF419RSJ, ENCFF524ZDS 301964 ENCODE Processing Pipeline 10316078aed1474f674bbc99b20b1f4a https://www.encodeproject.org/files/ENCFF775TPP/@@download/ENCFF775TPP.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF746AHG bigBed narrowPeak optimal idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF775TPP 745956 ENCODE Processing Pipeline 9d63eba2dea6dd68804886ed39aeaa23 https://www.encodeproject.org/files/ENCFF746AHG/@@download/ENCFF746AHG.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF131VZY bed narrowPeak conservative idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF038KKT, ENCFF379YGQ, ENCFF419RSJ, ENCFF524ZDS 243950 ENCODE Processing Pipeline 144c5c466457d13d60b2af3fb0ce2793 https://www.encodeproject.org/files/ENCFF131VZY/@@download/ENCFF131VZY.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF898WMO bigBed narrowPeak conservative idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF131VZY 626154 ENCODE Processing Pipeline 9ae9ff26e5a0f7d1e3704622dce0f83f https://www.encodeproject.org/files/ENCFF898WMO/@@download/ENCFF898WMO.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF254QBD bigBed narrowPeak optimal idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF778RMG 575528 ENCODE Processing Pipeline 74db73d707a085093346313f24a8b505 https://www.encodeproject.org/files/ENCFF254QBD/@@download/ENCFF254QBD.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF778RMG bed narrowPeak optimal idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF138CUL, ENCFF373TEW, ENCFF796SSH 253646 ENCODE Processing Pipeline b10e9ebc53d80fd09275ddc64ec080fb https://www.encodeproject.org/files/ENCFF778RMG/@@download/ENCFF778RMG.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF394WVZ bed narrowPeak conservative idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF138CUL, ENCFF373TEW, ENCFF796SSH 197309 ENCODE Processing Pipeline 63e73984e4425e3cbf06cb0ce7558780 https://www.encodeproject.org/files/ENCFF394WVZ/@@download/ENCFF394WVZ.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF267PJT bigBed narrowPeak conservative idr thresholded peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF394WVZ 476117 ENCODE Processing Pipeline 31c7639c16e37a7b31098b3c7ebfd393 https://www.encodeproject.org/files/ENCFF267PJT/@@download/ENCFF267PJT.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF525RRE fastq reads ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 1031769731 Xiang-Dong Fu, UCSD c41b386979a97218ff7949133e05a794 SRA:SRR6212926 https://www.encodeproject.org/files/ENCFF525RRE/@@download/ENCFF525RRE.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF693ECZ fastq reads ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 867841858 Xiang-Dong Fu, UCSD 2d6b90eed8059ce8c257ff7e9aef744d SRA:SRR6212925 https://www.encodeproject.org/files/ENCFF693ECZ/@@download/ENCFF693ECZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF478RXX bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF525RRE, ENCFF643CGH 654512157 ENCODE Processing Pipeline 45f3213fd8aceb34bb3dd296e0562d90 https://www.encodeproject.org/files/ENCFF478RXX/@@download/ENCFF478RXX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF699MFO bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF693ECZ, ENCFF807MUK 556632370 ENCODE Processing Pipeline 4b24cf41224e947bb7fba564ee20dbf1 https://www.encodeproject.org/files/ENCFF699MFO/@@download/ENCFF699MFO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF110WTS bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF693ECZ 556099988 ENCODE Processing Pipeline 871c6ebc932a7f3a0c333924d83d41ba https://www.encodeproject.org/files/ENCFF110WTS/@@download/ENCFF110WTS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF828AUG bam unfiltered alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF525RRE, ENCFF807MUK 1293670619 ENCODE Processing Pipeline 98d250a126d28849ee7db3c72eecca2f https://www.encodeproject.org/files/ENCFF828AUG/@@download/ENCFF828AUG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF196ENM bam unfiltered alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF693ECZ, ENCFF807MUK 1089557157 ENCODE Processing Pipeline 12b2801d713d344aac6cd2d47234fddc https://www.encodeproject.org/files/ENCFF196ENM/@@download/ENCFF196ENM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF557UCL bam unfiltered alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF693ECZ 1092935218 ENCODE Processing Pipeline 34735b3ba2a57b1b4d08e2155d83ef21 https://www.encodeproject.org/files/ENCFF557UCL/@@download/ENCFF557UCL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF135FEK bam unfiltered alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF525RRE, ENCFF643CGH 1298348555 ENCODE Processing Pipeline 9379e5b0a0cfaf61609c03bb6523df7e https://www.encodeproject.org/files/ENCFF135FEK/@@download/ENCFF135FEK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF987JXY bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF525RRE, ENCFF807MUK 655112807 ENCODE Processing Pipeline 20348fa3759aabb6eb1fb2af8a6a2823 https://www.encodeproject.org/files/ENCFF987JXY/@@download/ENCFF987JXY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF983NVY bigWig fold change over control ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF578XGS, ENCFF699MFO, ENCFF987JXY 851197748 ENCODE Processing Pipeline 7cb68ad2258dce4bafa0c1dac10850d3 https://www.encodeproject.org/files/ENCFF983NVY/@@download/ENCFF983NVY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF587UIU bigWig signal p-value ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF987JXY 505401775 ENCODE Processing Pipeline 539abd00fa6ec2b91f650ae516152ecb https://www.encodeproject.org/files/ENCFF587UIU/@@download/ENCFF587UIU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF373QRK bed narrowPeak conservative idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF229FTN, ENCFF456VQO, ENCFF946JBN 55325 ENCODE Processing Pipeline 3eea3ccb567919ba25f627571b647a33 https://www.encodeproject.org/files/ENCFF373QRK/@@download/ENCFF373QRK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF560CMG bed narrowPeak optimal idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF229FTN, ENCFF456VQO, ENCFF946JBN 66668 ENCODE Processing Pipeline 3c99421784619151bea246fef5f923fc https://www.encodeproject.org/files/ENCFF560CMG/@@download/ENCFF560CMG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF342DKX bigWig fold change over control ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF699MFO 343171699 ENCODE Processing Pipeline 2faf3a414b66d78e08b90d66b7a15976 https://www.encodeproject.org/files/ENCFF342DKX/@@download/ENCFF342DKX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF946JBN bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF578XGS, ENCFF699MFO, ENCFF987JXY 6931646 ENCODE Processing Pipeline fe432d713a73b2e8063be9379faabe20 https://www.encodeproject.org/files/ENCFF946JBN/@@download/ENCFF946JBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF686ZBE bigBed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF229FTN 13262849 ENCODE Processing Pipeline dd46a7c44063330ae1f88195fc610d80 https://www.encodeproject.org/files/ENCFF686ZBE/@@download/ENCFF686ZBE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF303UYX bigBed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF946JBN 13293640 ENCODE Processing Pipeline ec8714be997058a3d0e99d737475057e https://www.encodeproject.org/files/ENCFF303UYX/@@download/ENCFF303UYX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF381RHU bigBed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456VQO 13246606 ENCODE Processing Pipeline 8e7aac3ccf429cb3a373e7e9588150ff https://www.encodeproject.org/files/ENCFF381RHU/@@download/ENCFF381RHU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF552CYY bigBed narrowPeak conservative idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF373QRK 167361 ENCODE Processing Pipeline 5215cb51cd728e19d7c49f4b5c01522d https://www.encodeproject.org/files/ENCFF552CYY/@@download/ENCFF552CYY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF645HHQ bigWig signal p-value ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF578XGS, ENCFF699MFO, ENCFF987JXY 876213816 ENCODE Processing Pipeline 7eef9a323439bb952ddb47019a6d9674 https://www.encodeproject.org/files/ENCFF645HHQ/@@download/ENCFF645HHQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF456VQO bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF699MFO 5702987 ENCODE Processing Pipeline 95ef0417c5bb74b9e7bb3b6ba868331d https://www.encodeproject.org/files/ENCFF456VQO/@@download/ENCFF456VQO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF229FTN bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF987JXY 5873218 ENCODE Processing Pipeline c90c5cdfc087540d73eebbe76e58e410 https://www.encodeproject.org/files/ENCFF229FTN/@@download/ENCFF229FTN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF208HRC bigWig signal p-value ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF699MFO 428605917 ENCODE Processing Pipeline de3426c308a10528ce3bf6105eab5b21 https://www.encodeproject.org/files/ENCFF208HRC/@@download/ENCFF208HRC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF646NML bigWig fold change over control ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF987JXY 405783623 ENCODE Processing Pipeline 8a5806f7e60d65bb827ce6d4110991cc https://www.encodeproject.org/files/ENCFF646NML/@@download/ENCFF646NML.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF693BHL bigBed narrowPeak optimal idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF560CMG 187407 ENCODE Processing Pipeline 7913788fbf3b8bb718ecc72cd20f8e97 https://www.encodeproject.org/files/ENCFF693BHL/@@download/ENCFF693BHL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF576KYT bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF110WTS, ENCFF253UKR, ENCFF279QEN, ENCFF478RXX 6895761 ENCODE Processing Pipeline a80cac19af6b159bc807c885c73a2c33 https://www.encodeproject.org/files/ENCFF576KYT/@@download/ENCFF576KYT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF124GJR bigBed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF838ZPY 13276683 ENCODE Processing Pipeline edbcb1d3229cd75a585a2a64156a182a https://www.encodeproject.org/files/ENCFF124GJR/@@download/ENCFF124GJR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF268OSL bigWig signal p-value ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF110WTS, ENCFF253UKR, ENCFF279QEN, ENCFF478RXX 937864060 ENCODE Processing Pipeline f270cbcee2b69cf0a85d10de8e6bbf47 https://www.encodeproject.org/files/ENCFF268OSL/@@download/ENCFF268OSL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF132TKJ bigWig fold change over control ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF110WTS, ENCFF253UKR 326344427 ENCODE Processing Pipeline 5412fb874f1d70087b04775df6b55f5b https://www.encodeproject.org/files/ENCFF132TKJ/@@download/ENCFF132TKJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF041EMG bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF110WTS, ENCFF253UKR 5667601 ENCODE Processing Pipeline 9d84ff9d0b0642f54b077fda789dc452 https://www.encodeproject.org/files/ENCFF041EMG/@@download/ENCFF041EMG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF509YFF bed narrowPeak optimal idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF041EMG, ENCFF419RSJ, ENCFF576KYT, ENCFF838ZPY 67222 ENCODE Processing Pipeline bd33ba2c6ca2ccfbae0b7c1a3e3dac6e https://www.encodeproject.org/files/ENCFF509YFF/@@download/ENCFF509YFF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF150IKP bigBed narrowPeak optimal idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF509YFF 189069 ENCODE Processing Pipeline 101061e4791728759fbe0c45da0f3732 https://www.encodeproject.org/files/ENCFF150IKP/@@download/ENCFF150IKP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF838ZPY bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF478RXX 5772923 ENCODE Processing Pipeline 1f4a094b98ce3351206ce25a6b5b7f41 https://www.encodeproject.org/files/ENCFF838ZPY/@@download/ENCFF838ZPY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF208AKV bigBed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF041EMG 13248364 ENCODE Processing Pipeline 612aabeaa99a569d3521bf60e7816ef4 https://www.encodeproject.org/files/ENCFF208AKV/@@download/ENCFF208AKV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF725ECP bigWig signal p-value ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF110WTS, ENCFF253UKR 450784635 ENCODE Processing Pipeline c76e9e25660763d3cc7cf92350e969f0 https://www.encodeproject.org/files/ENCFF725ECP/@@download/ENCFF725ECP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF900BXN bigWig fold change over control ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF478RXX 393052283 ENCODE Processing Pipeline 026ab615c1e423379a1e1a5e24db920b https://www.encodeproject.org/files/ENCFF900BXN/@@download/ENCFF900BXN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF124POL bigBed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF576KYT 13321240 ENCODE Processing Pipeline 474444af07aea5a73c8111c2e4e09005 https://www.encodeproject.org/files/ENCFF124POL/@@download/ENCFF124POL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF496MCE bed narrowPeak conservative idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF041EMG, ENCFF419RSJ, ENCFF576KYT, ENCFF838ZPY 56232 ENCODE Processing Pipeline da0ff0cd89ea4fb10e9539f9cb3c3f4f https://www.encodeproject.org/files/ENCFF496MCE/@@download/ENCFF496MCE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF843YFX bigBed narrowPeak conservative idr thresholded peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF496MCE 170436 ENCODE Processing Pipeline 9577e639fb5e4a5ca6ccd3e081d3c4aa https://www.encodeproject.org/files/ENCFF843YFX/@@download/ENCFF843YFX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF385YWH bigWig signal p-value ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF478RXX 497020238 ENCODE Processing Pipeline 097f5cfa467904d4b4c9a41f74226419 https://www.encodeproject.org/files/ENCFF385YWH/@@download/ENCFF385YWH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF945HYM bigWig fold change over control ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF110WTS, ENCFF253UKR, ENCFF279QEN, ENCFF478RXX 805675511 ENCODE Processing Pipeline ea55ba77a8df571473071a9533999a54 https://www.encodeproject.org/files/ENCFF945HYM/@@download/ENCFF945HYM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF049DQW bam unfiltered alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF807MUK 1629516820 ENCODE Processing Pipeline ed13cc95ec029d932e8211b508a48811 https://www.encodeproject.org/files/ENCFF049DQW/@@download/ENCFF049DQW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF233XVJ bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF807MUK 1208595209 ENCODE Processing Pipeline 6bf90f3475abe52959b293c5611d0bd0 https://www.encodeproject.org/files/ENCFF233XVJ/@@download/ENCFF233XVJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF233VED bam unfiltered alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF807MUK 1398579464 ENCODE Processing Pipeline 6859e2c7a50ad674caf609ad596015f2 https://www.encodeproject.org/files/ENCFF233VED/@@download/ENCFF233VED.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF430WBQ bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF807MUK 1023915550 ENCODE Processing Pipeline cb131e11a561481291b3b8fc99878de6 https://www.encodeproject.org/files/ENCFF430WBQ/@@download/ENCFF430WBQ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF040NRE bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF430WBQ, ENCFF871NUZ 655320629 ENCODE Processing Pipeline eecbab739159748a3af48073020cac7e https://www.encodeproject.org/files/ENCFF040NRE/@@download/ENCFF040NRE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF737YKX bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF430WBQ, ENCFF871NUZ 620084601 ENCODE Processing Pipeline 96fc6caff1b85739677de66fdd5913e0 https://www.encodeproject.org/files/ENCFF737YKX/@@download/ENCFF737YKX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF502TYN bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF233XVJ, ENCFF321UJV 596451076 ENCODE Processing Pipeline 8bd16485cc02b1de00c4422b89be3c21 https://www.encodeproject.org/files/ENCFF502TYN/@@download/ENCFF502TYN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF017SJJ bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF233XVJ, ENCFF321UJV, ENCFF430WBQ, ENCFF871NUZ 1133424667 ENCODE Processing Pipeline 35cf471596837e26d57f535d72a0f796 https://www.encodeproject.org/files/ENCFF017SJJ/@@download/ENCFF017SJJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF480IAE bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF233XVJ, ENCFF321UJV 637245275 ENCODE Processing Pipeline 3aca4dae7c86f4fd7d0723317c44d3c9 https://www.encodeproject.org/files/ENCFF480IAE/@@download/ENCFF480IAE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF486TVE bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF233XVJ, ENCFF321UJV, ENCFF430WBQ, ENCFF871NUZ 1283439968 ENCODE Processing Pipeline f8f7bc67aa3d2822ef9669864c9707b3 https://www.encodeproject.org/files/ENCFF486TVE/@@download/ENCFF486TVE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF086YFF bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF430WBQ, ENCFF871NUZ 6419348 ENCODE Processing Pipeline f19df16c5a6e5229aab8f0c4954f97a1 https://www.encodeproject.org/files/ENCFF086YFF/@@download/ENCFF086YFF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF079CJA bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF233XVJ, ENCFF321UJV 6422117 ENCODE Processing Pipeline 7462f67a9e73f083935846d663700f1c https://www.encodeproject.org/files/ENCFF079CJA/@@download/ENCFF079CJA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF884TKH bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF233XVJ, ENCFF321UJV, ENCFF430WBQ, ENCFF871NUZ 7121951 ENCODE Processing Pipeline 5743eeb064d5404ca45ddaf032fc19cd https://www.encodeproject.org/files/ENCFF884TKH/@@download/ENCFF884TKH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF157SCG bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF086YFF 12970213 ENCODE Processing Pipeline 338e6c5e32f560bdd0743b143881b948 https://www.encodeproject.org/files/ENCFF157SCG/@@download/ENCFF157SCG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF079FJT bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF079CJA 13103160 ENCODE Processing Pipeline e36b77454adf0b773a225ff27e9192d9 https://www.encodeproject.org/files/ENCFF079FJT/@@download/ENCFF079FJT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF187AWZ bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF884TKH 13215443 ENCODE Processing Pipeline 284828fc1f2e196108b1755d9bee32f7 https://www.encodeproject.org/files/ENCFF187AWZ/@@download/ENCFF187AWZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF313YXM bed narrowPeak conservative idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF079CJA, ENCFF086YFF, ENCFF884TKH 858201 ENCODE Processing Pipeline 30426f0737cdbf9ff0b6dae8b02b65ac https://www.encodeproject.org/files/ENCFF313YXM/@@download/ENCFF313YXM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF184WRA bigBed narrowPeak conservative idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF313YXM 1871502 ENCODE Processing Pipeline b64f01c4a5ddc6bb4e222375f833db7c https://www.encodeproject.org/files/ENCFF184WRA/@@download/ENCFF184WRA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF566WSG bed narrowPeak optimal idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF079CJA, ENCFF086YFF, ENCFF884TKH 1009004 ENCODE Processing Pipeline 1bd5d50abbe1d858675db04c9d86fd4a https://www.encodeproject.org/files/ENCFF566WSG/@@download/ENCFF566WSG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF060NRO bigBed narrowPeak optimal idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF566WSG 2139949 ENCODE Processing Pipeline 653d50ebb48085a855bb4e5d10143783 https://www.encodeproject.org/files/ENCFF060NRO/@@download/ENCFF060NRO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF634YGY fastq reads ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 1 50 single-ended 1522057961 Richard Myers, HAIB 29bc7c04b434d7505a65c1507ec6bebc SRA:SRR5338762 https://www.encodeproject.org/files/ENCFF634YGY/@@download/ENCFF634YGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF244DVW fastq reads ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 1 50 single-ended 1302821527 Richard Myers, HAIB e7a0a463234705ff8e9a359b776235bb SRA:SRR5338761 https://www.encodeproject.org/files/ENCFF244DVW/@@download/ENCFF244DVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF247MLF/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF679ZOV bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF807MUK 1208595180 ENCODE Processing Pipeline c8b6cc3d0f2e77f003e7a0097a30cc8f https://www.encodeproject.org/files/ENCFF679ZOV/@@download/ENCFF679ZOV.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF140FDZ bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF807MUK 1023915522 ENCODE Processing Pipeline 70563467b04d9d88e2b10b9dccf577b1 https://www.encodeproject.org/files/ENCFF140FDZ/@@download/ENCFF140FDZ.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF300YTE bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF140FDZ, ENCFF871NUZ 654051446 ENCODE Processing Pipeline 945bf7b4914970c280aebfa25dcf2d2f https://www.encodeproject.org/files/ENCFF300YTE/@@download/ENCFF300YTE.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF685MHA bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF321UJV, ENCFF679ZOV 593416998 ENCODE Processing Pipeline 656299fe65439d39dc5c02520abbde72 https://www.encodeproject.org/files/ENCFF685MHA/@@download/ENCFF685MHA.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF007JYW bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF140FDZ, ENCFF321UJV, ENCFF679ZOV, ENCFF871NUZ 1125281398 ENCODE Processing Pipeline f588c44db1a14d8d8141268afb04ad21 https://www.encodeproject.org/files/ENCFF007JYW/@@download/ENCFF007JYW.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF469UUV bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF321UJV, ENCFF679ZOV 631718567 ENCODE Processing Pipeline 0f171e6d1fec7acc97f9c8a9ee4181af https://www.encodeproject.org/files/ENCFF469UUV/@@download/ENCFF469UUV.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF264PQZ bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF140FDZ, ENCFF871NUZ 618181475 ENCODE Processing Pipeline bbe680c2ca0a22c0dd503d33dc08ab65 https://www.encodeproject.org/files/ENCFF264PQZ/@@download/ENCFF264PQZ.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF269NAU bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF140FDZ, ENCFF321UJV, ENCFF679ZOV, ENCFF871NUZ 1270817963 ENCODE Processing Pipeline 007064487d3792de8a25ce4dca21f14d https://www.encodeproject.org/files/ENCFF269NAU/@@download/ENCFF269NAU.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF061SPB bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF321UJV, ENCFF679ZOV 6554758 ENCODE Processing Pipeline 22e0f0e2365c35a539a3b4e0a3c695c2 https://www.encodeproject.org/files/ENCFF061SPB/@@download/ENCFF061SPB.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF335ZZX bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF140FDZ, ENCFF871NUZ 6592953 ENCODE Processing Pipeline ddb424f59e5fc822d1779b7d9f955e99 https://www.encodeproject.org/files/ENCFF335ZZX/@@download/ENCFF335ZZX.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF800NJQ bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF140FDZ, ENCFF321UJV, ENCFF679ZOV, ENCFF871NUZ 7173337 ENCODE Processing Pipeline 64c61463dfb3d7153bcc46ce429f31d7 https://www.encodeproject.org/files/ENCFF800NJQ/@@download/ENCFF800NJQ.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF272NDT bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF335ZZX 12984045 ENCODE Processing Pipeline 461477ae887e93baf17bfd3b28a894b0 https://www.encodeproject.org/files/ENCFF272NDT/@@download/ENCFF272NDT.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF900TNM bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF800NJQ 13216364 ENCODE Processing Pipeline 401f939f9acd0957f6cecedfb6837e26 https://www.encodeproject.org/files/ENCFF900TNM/@@download/ENCFF900TNM.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF056YSA bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF061SPB 13110963 ENCODE Processing Pipeline 03cc3ba77a4775f12236d1243e6551e3 https://www.encodeproject.org/files/ENCFF056YSA/@@download/ENCFF056YSA.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF388IBA bam unfiltered alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF643CGH 1636770772 ENCODE Processing Pipeline 8f26ec5a7f8859c57bc94c1563d2c099 https://www.encodeproject.org/files/ENCFF388IBA/@@download/ENCFF388IBA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF488ZUW bam unfiltered alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF643CGH 1404633596 ENCODE Processing Pipeline 19221ee6265f7e37ba62ae6f66a92b36 https://www.encodeproject.org/files/ENCFF488ZUW/@@download/ENCFF488ZUW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF475YAS bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF643CGH 1023738747 ENCODE Processing Pipeline 80e072d04e32d74e896a01354abfca6c https://www.encodeproject.org/files/ENCFF475YAS/@@download/ENCFF475YAS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF168KFH bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF643CGH 1208466148 ENCODE Processing Pipeline 7988062d5124fc1cc1cb2e6ef7783485 https://www.encodeproject.org/files/ENCFF168KFH/@@download/ENCFF168KFH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF396IYJ bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF168KFH, ENCFF610PNU 646770379 ENCODE Processing Pipeline 64ee646bfebb240d711100905b612ea4 https://www.encodeproject.org/files/ENCFF396IYJ/@@download/ENCFF396IYJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF196IBD bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF259AXY, ENCFF475YAS 599202019 ENCODE Processing Pipeline 9ca1e1f0991739e5ed49385aaf143bca https://www.encodeproject.org/files/ENCFF196IBD/@@download/ENCFF196IBD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF341WIV bigWig signal p-value ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF168KFH, ENCFF259AXY, ENCFF475YAS, ENCFF610PNU 1005261413 ENCODE Processing Pipeline cb3a0af943054f381cf64a27862d5cf8 https://www.encodeproject.org/files/ENCFF341WIV/@@download/ENCFF341WIV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF435IZM bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF259AXY, ENCFF475YAS 624144539 ENCODE Processing Pipeline e32e226cc822b6571d71a3589e74b226 https://www.encodeproject.org/files/ENCFF435IZM/@@download/ENCFF435IZM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF921SNH bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF168KFH, ENCFF610PNU 632609332 ENCODE Processing Pipeline 14d6b8a22689b6023441ff12a41ef389 https://www.encodeproject.org/files/ENCFF921SNH/@@download/ENCFF921SNH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF057SLO bigWig fold change over control ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF168KFH, ENCFF259AXY, ENCFF475YAS, ENCFF610PNU 1259588094 ENCODE Processing Pipeline a096c4c777830ac9ad3718a0b4f9266b https://www.encodeproject.org/files/ENCFF057SLO/@@download/ENCFF057SLO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF150WJN bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF259AXY, ENCFF475YAS 6431705 ENCODE Processing Pipeline 5ccd5655582b42730008df8acf0490a2 https://www.encodeproject.org/files/ENCFF150WJN/@@download/ENCFF150WJN.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF927HII bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF168KFH, ENCFF610PNU 6423332 ENCODE Processing Pipeline bc4a494fe1cccb9cb2d19113fb07a9cd https://www.encodeproject.org/files/ENCFF927HII/@@download/ENCFF927HII.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF196BJH bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF150WJN 12993612 ENCODE Processing Pipeline 22a93a15757ea7363d0ef71502a97fa0 https://www.encodeproject.org/files/ENCFF196BJH/@@download/ENCFF196BJH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF505BIK bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF168KFH, ENCFF259AXY, ENCFF475YAS, ENCFF610PNU 7085788 ENCODE Processing Pipeline 2dc6daa6ebba8416e00abd27bf66b891 https://www.encodeproject.org/files/ENCFF505BIK/@@download/ENCFF505BIK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF631ZVW bed narrowPeak conservative idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF150WJN, ENCFF419RSJ, ENCFF505BIK, ENCFF927HII 848773 ENCODE Processing Pipeline b5ed31d73946965a5727372e3aab6a96 https://www.encodeproject.org/files/ENCFF631ZVW/@@download/ENCFF631ZVW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF459TWF bed narrowPeak optimal idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF150WJN, ENCFF419RSJ, ENCFF505BIK, ENCFF927HII 989651 ENCODE Processing Pipeline 9fd3879ab7a35281338c381a2c05f95d https://www.encodeproject.org/files/ENCFF459TWF/@@download/ENCFF459TWF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF993VRB bigBed narrowPeak conservative idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF631ZVW 1859240 ENCODE Processing Pipeline 61108795b7dac3b3089cab139956b2b8 https://www.encodeproject.org/files/ENCFF993VRB/@@download/ENCFF993VRB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF661SJX bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF927HII 13110866 ENCODE Processing Pipeline 46973f2b2a891ac4e464b1789e500155 https://www.encodeproject.org/files/ENCFF661SJX/@@download/ENCFF661SJX.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF562ROB bigBed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF505BIK 13177184 ENCODE Processing Pipeline ca988626498bad2f79cc625b26cf3651 https://www.encodeproject.org/files/ENCFF562ROB/@@download/ENCFF562ROB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF719ELB bigBed narrowPeak optimal idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF459TWF 2113152 ENCODE Processing Pipeline cbca22479638521576d6f70141df46cf https://www.encodeproject.org/files/ENCFF719ELB/@@download/ENCFF719ELB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF603OCV bed narrowPeak optimal idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF061SPB, ENCFF335ZZX, ENCFF800NJQ 875622 ENCODE Processing Pipeline d4db56cba78dbb66b37446153ce0a506 https://www.encodeproject.org/files/ENCFF603OCV/@@download/ENCFF603OCV.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF612QWS bigBed narrowPeak optimal idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF603OCV 1530928 ENCODE Processing Pipeline 15b39ce8f8e8d0b1eaddd49f8e9e42bf https://www.encodeproject.org/files/ENCFF612QWS/@@download/ENCFF612QWS.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF026EYC bed narrowPeak conservative idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF061SPB, ENCFF335ZZX, ENCFF800NJQ 744952 ENCODE Processing Pipeline b1294229a288baf5e7ca6b107c14d398 https://www.encodeproject.org/files/ENCFF026EYC/@@download/ENCFF026EYC.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF826BFA bigBed narrowPeak conservative idr thresholded peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF026EYC 1354488 ENCODE Processing Pipeline 04721aedadbaa2d864c56ff5c8028e34 https://www.encodeproject.org/files/ENCFF826BFA/@@download/ENCFF826BFA.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF319MAG bam unfiltered alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 50 ENCFF807MUK, ENCFF822SMI 1223855627 ENCODE Processing Pipeline 775d87d012d0ba0e1535045b922a0aa6 https://www.encodeproject.org/files/ENCFF319MAG/@@download/ENCFF319MAG.bam hg19 released borderline replicate concordance, low read depth ENCFF957NUN bam unfiltered alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 50 ENCFF807MUK, ENCFF813TPE 2215728345 ENCODE Processing Pipeline 19c7d069b0de5cf1a6f6108d317ba16e https://www.encodeproject.org/files/ENCFF957NUN/@@download/ENCFF957NUN.bam hg19 released borderline replicate concordance, low read depth ENCFF316IEO bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF304NXG, ENCFF437NVC, ENCFF994YBV 955425045 ENCODE Processing Pipeline c0920a95ad4107caa277546eca5c37dd https://www.encodeproject.org/files/ENCFF316IEO/@@download/ENCFF316IEO.bigWig hg19 released borderline replicate concordance, low read depth ENCFF784IUY bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF304NXG, ENCFF437NVC, ENCFF994YBV 855106932 ENCODE Processing Pipeline 47439db98e3dcca0cd6c648d550a728a https://www.encodeproject.org/files/ENCFF784IUY/@@download/ENCFF784IUY.bigWig hg19 released borderline replicate concordance, low read depth ENCFF145TCF bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF304NXG, ENCFF437NVC, ENCFF698VEP, ENCFF994YBV 1024599886 ENCODE Processing Pipeline 869221bdc6bd42baad0efe6548a0f7e5 https://www.encodeproject.org/files/ENCFF145TCF/@@download/ENCFF145TCF.bigWig hg19 released borderline replicate concordance, low read depth ENCFF618RTC bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF304NXG, ENCFF437NVC, ENCFF698VEP, ENCFF994YBV 1124453621 ENCODE Processing Pipeline 10d1aa4a7c501ff411a16dba7dbd53de https://www.encodeproject.org/files/ENCFF618RTC/@@download/ENCFF618RTC.bigWig hg19 released borderline replicate concordance, low read depth ENCFF017KJV bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF304NXG, ENCFF437NVC, ENCFF994YBV 6289150 ENCODE Processing Pipeline 3e62bfe71d8297b8a056cdb03c11a8e6 https://www.encodeproject.org/files/ENCFF017KJV/@@download/ENCFF017KJV.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF030MOS bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF304NXG, ENCFF698VEP, ENCFF994YBV 5455129 ENCODE Processing Pipeline 6797e15bdea39772a8f8ebcda10a7f9c https://www.encodeproject.org/files/ENCFF030MOS/@@download/ENCFF030MOS.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF828EGG bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF304NXG, ENCFF437NVC, ENCFF698VEP, ENCFF994YBV 6683072 ENCODE Processing Pipeline c95e097f161321cf4dc56070b4e8482f https://www.encodeproject.org/files/ENCFF828EGG/@@download/ENCFF828EGG.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF438BZK bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF017KJV 13507971 ENCODE Processing Pipeline 24429bccccbfc8414d984d0a3cb6ddb9 https://www.encodeproject.org/files/ENCFF438BZK/@@download/ENCFF438BZK.bigBed hg19 released borderline replicate concordance, low read depth ENCFF971PHH bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF030MOS 11329881 ENCODE Processing Pipeline fb12070b49b1a5a7ee16fd3e332f5e5a https://www.encodeproject.org/files/ENCFF971PHH/@@download/ENCFF971PHH.bigBed hg19 released borderline replicate concordance, low read depth ENCFF353WJY bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF828EGG 13615510 ENCODE Processing Pipeline 21919310c3c1c7f54452e45409f0f419 https://www.encodeproject.org/files/ENCFF353WJY/@@download/ENCFF353WJY.bigBed hg19 released borderline replicate concordance, low read depth ENCFF263VIF bed narrowPeak conservative idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF001TDO, ENCFF017KJV, ENCFF030MOS, ENCFF828EGG 270731 ENCODE Processing Pipeline 70ed622ebfd21b22fce60f3a083b935f https://www.encodeproject.org/files/ENCFF263VIF/@@download/ENCFF263VIF.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF527LKZ bigBed narrowPeak conservative idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF263VIF 537358 ENCODE Processing Pipeline e5210d1b13109a6e5f282de17415e44a https://www.encodeproject.org/files/ENCFF527LKZ/@@download/ENCFF527LKZ.bigBed hg19 released borderline replicate concordance, low read depth ENCFF712NYW bed narrowPeak optimal idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF001TDO, ENCFF017KJV, ENCFF030MOS, ENCFF828EGG 502010 ENCODE Processing Pipeline 3b7c8a8fa1d88fb49d4d31be7971c323 https://www.encodeproject.org/files/ENCFF712NYW/@@download/ENCFF712NYW.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF986UYW bigBed narrowPeak optimal idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF712NYW 1033336 ENCODE Processing Pipeline af6ad92d25424550d14e4ebe5d3814f4 https://www.encodeproject.org/files/ENCFF986UYW/@@download/ENCFF986UYW.bigBed hg19 released borderline replicate concordance, low read depth ENCFF813TPE fastq reads ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 1 50 single-ended 2113308495 Richard Myers, HAIB 085c2a038aa14feaabab8c2360c7714b SRA:SRR5331242 https://www.encodeproject.org/files/ENCFF813TPE/@@download/ENCFF813TPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF876NBT/ released borderline replicate concordance, low read depth ENCFF822SMI fastq reads ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 1 50 single-ended 1146312288 Richard Myers, HAIB f111b2f5de096300ab317f32b00793bc SRA:SRR5331243 https://www.encodeproject.org/files/ENCFF822SMI/@@download/ENCFF822SMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BFY/ released borderline replicate concordance, low read depth ENCFF698VEP bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 50 ENCFF807MUK, ENCFF822SMI 928744047 ENCODE Processing Pipeline d4b51f76e092833c44156063a67f22c0 https://www.encodeproject.org/files/ENCFF698VEP/@@download/ENCFF698VEP.bam hg19 released borderline replicate concordance, low read depth ENCFF437NVC bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 50 ENCFF807MUK, ENCFF813TPE 1624435735 ENCODE Processing Pipeline d8bda1b8a8939167693b4b115a3e3da7 https://www.encodeproject.org/files/ENCFF437NVC/@@download/ENCFF437NVC.bam hg19 released borderline replicate concordance, low read depth ENCFF319RKO bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF356JMK, ENCFF437NVC, ENCFF994YBV 959209736 ENCODE Processing Pipeline d33686747ccad9fa7ff426a397c9b6b3 https://www.encodeproject.org/files/ENCFF319RKO/@@download/ENCFF319RKO.bigWig hg19 archived borderline replicate concordance, low read depth ENCFF804GWV bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF304NXG, ENCFF698VEP, ENCFF994YBV 933651207 ENCODE Processing Pipeline b58182df536b90bd4bb7999e32779422 https://www.encodeproject.org/files/ENCFF804GWV/@@download/ENCFF804GWV.bigWig hg19 released borderline replicate concordance, low read depth ENCFF782QBR bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF304NXG, ENCFF698VEP, ENCFF994YBV 602371076 ENCODE Processing Pipeline 383425c742766e1c11fea51f7cffceb1 https://www.encodeproject.org/files/ENCFF782QBR/@@download/ENCFF782QBR.bigWig hg19 released borderline replicate concordance, low read depth ENCFF387HGD bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF356JMK, ENCFF437NVC, ENCFF698VEP, ENCFF994YBV 1024005971 ENCODE Processing Pipeline 1ec482cc072a56c8a034ade8f38ccc0e https://www.encodeproject.org/files/ENCFF387HGD/@@download/ENCFF387HGD.bigWig hg19 archived borderline replicate concordance, low read depth ENCFF250NWE bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF356JMK, ENCFF437NVC, ENCFF994YBV 867107176 ENCODE Processing Pipeline fcd66ce4d32fcbac886a497afd9ddfc7 https://www.encodeproject.org/files/ENCFF250NWE/@@download/ENCFF250NWE.bigWig hg19 archived borderline replicate concordance, low read depth ENCFF422FDS bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF356JMK, ENCFF437NVC, ENCFF698VEP, ENCFF994YBV 1167458422 ENCODE Processing Pipeline 851505e0ef1ea128b19a021d45aad8f8 https://www.encodeproject.org/files/ENCFF422FDS/@@download/ENCFF422FDS.bigWig hg19 archived borderline replicate concordance, low read depth ENCFF296FGF bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF356JMK, ENCFF698VEP, ENCFF994YBV 5653285 ENCODE Processing Pipeline 3764a7b42bc983547974deeed1fa2371 https://www.encodeproject.org/files/ENCFF296FGF/@@download/ENCFF296FGF.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF175OWR bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF356JMK, ENCFF437NVC, ENCFF994YBV 6452225 ENCODE Processing Pipeline 3d953209576895e0d22ecd9a876406a0 https://www.encodeproject.org/files/ENCFF175OWR/@@download/ENCFF175OWR.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF223TUK bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF296FGF 11396832 ENCODE Processing Pipeline f7e4acf4ef9cf7c07034ba4f97ed9ad6 https://www.encodeproject.org/files/ENCFF223TUK/@@download/ENCFF223TUK.bigBed hg19 archived borderline replicate concordance, low read depth ENCFF403CMY bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF356JMK, ENCFF437NVC, ENCFF698VEP, ENCFF994YBV 6802429 ENCODE Processing Pipeline 12d87506200180c4ed22dbdb2e6b1967 https://www.encodeproject.org/files/ENCFF403CMY/@@download/ENCFF403CMY.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF393PZE bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF175OWR 13520780 ENCODE Processing Pipeline 28483f1687af66e41560b5a428587302 https://www.encodeproject.org/files/ENCFF393PZE/@@download/ENCFF393PZE.bigBed hg19 archived borderline replicate concordance, low read depth ENCFF442GKE bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF403CMY 13621503 ENCODE Processing Pipeline 6b96ae544eb75b886a6a9a40959c0b6e https://www.encodeproject.org/files/ENCFF442GKE/@@download/ENCFF442GKE.bigBed hg19 archived borderline replicate concordance, low read depth ENCFF884PQP bam unfiltered alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 50 ENCFF643CGH, ENCFF822SMI 1226947315 ENCODE Processing Pipeline c63ac8d6f6378587723a4fe149c34de8 https://www.encodeproject.org/files/ENCFF884PQP/@@download/ENCFF884PQP.bam GRCh38 released borderline replicate concordance, low read depth ENCFF257FVX bam unfiltered alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 50 ENCFF643CGH, ENCFF813TPE 2222391471 ENCODE Processing Pipeline 0b625a7acdd8d2d7db850cbf74d96504 https://www.encodeproject.org/files/ENCFF257FVX/@@download/ENCFF257FVX.bam GRCh38 released borderline replicate concordance, low read depth ENCFF319BJC bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 50 ENCFF643CGH, ENCFF822SMI 928585355 ENCODE Processing Pipeline 0593b9b4a4d419f0b9baaa4d2985698b https://www.encodeproject.org/files/ENCFF319BJC/@@download/ENCFF319BJC.bam GRCh38 released borderline replicate concordance, low read depth ENCFF340QRX bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 50 ENCFF643CGH, ENCFF813TPE 1624077843 ENCODE Processing Pipeline 13f49284e055ce3cde8e53017028b6ee https://www.encodeproject.org/files/ENCFF340QRX/@@download/ENCFF340QRX.bam GRCh38 released borderline replicate concordance, low read depth ENCFF039BZT bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF103VPA, ENCFF340QRX, ENCFF894EOG 928084875 ENCODE Processing Pipeline 45a1af7e23aac765f1d4885525ee93d8 https://www.encodeproject.org/files/ENCFF039BZT/@@download/ENCFF039BZT.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF279SVE bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF103VPA, ENCFF319BJC, ENCFF894EOG 904722595 ENCODE Processing Pipeline f1f7b01f0a1bcceb5428d52d737f6891 https://www.encodeproject.org/files/ENCFF279SVE/@@download/ENCFF279SVE.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF924SII bigWig signal p-value ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF103VPA, ENCFF319BJC, ENCFF340QRX, ENCFF894EOG 1190712365 ENCODE Processing Pipeline f10561b78169011b474850fa52022140 https://www.encodeproject.org/files/ENCFF924SII/@@download/ENCFF924SII.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF710MWZ bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF103VPA, ENCFF340QRX, ENCFF894EOG 853183899 ENCODE Processing Pipeline b7c59df4b07b50c75474de8770cf1a2b https://www.encodeproject.org/files/ENCFF710MWZ/@@download/ENCFF710MWZ.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF491ODT bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF103VPA, ENCFF319BJC, ENCFF894EOG 612247424 ENCODE Processing Pipeline 152db05ea4308351829212b547070598 https://www.encodeproject.org/files/ENCFF491ODT/@@download/ENCFF491ODT.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF752PDZ bigWig fold change over control ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF103VPA, ENCFF319BJC, ENCFF340QRX, ENCFF894EOG 1120475110 ENCODE Processing Pipeline 945bd11978e6604146ac52e9326c4e7d https://www.encodeproject.org/files/ENCFF752PDZ/@@download/ENCFF752PDZ.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF809PHA bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF103VPA, ENCFF340QRX, ENCFF894EOG 6296765 ENCODE Processing Pipeline ecf6373e8af40d2644cd1e893d759529 https://www.encodeproject.org/files/ENCFF809PHA/@@download/ENCFF809PHA.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF378UNO bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF103VPA, ENCFF319BJC, ENCFF340QRX, ENCFF894EOG 6670160 ENCODE Processing Pipeline ffa6b4f7c7ecc094916c33d6613b5c5c https://www.encodeproject.org/files/ENCFF378UNO/@@download/ENCFF378UNO.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF842VCH bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF809PHA 13523128 ENCODE Processing Pipeline c665b5f7ddcb92d58105e398e2cf2913 https://www.encodeproject.org/files/ENCFF842VCH/@@download/ENCFF842VCH.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF447HAK bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF378UNO 13605863 ENCODE Processing Pipeline 96a4ff5c2876cf93aef659c3b05af1ff https://www.encodeproject.org/files/ENCFF447HAK/@@download/ENCFF447HAK.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF159RMJ bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF103VPA, ENCFF319BJC, ENCFF894EOG 5451027 ENCODE Processing Pipeline df508a014628571e20fc743555a95e9d https://www.encodeproject.org/files/ENCFF159RMJ/@@download/ENCFF159RMJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF437WFB bigBed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF159RMJ 11334315 ENCODE Processing Pipeline 9d66dd0d440d9cdfa1d8e1da24994f71 https://www.encodeproject.org/files/ENCFF437WFB/@@download/ENCFF437WFB.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF967ZYC bigBed narrowPeak optimal idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF912SQI 1036343 ENCODE Processing Pipeline e118bc14050e035ccffc246fcaf3825e https://www.encodeproject.org/files/ENCFF967ZYC/@@download/ENCFF967ZYC.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF912SQI bed narrowPeak optimal idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF159RMJ, ENCFF378UNO, ENCFF419RSJ, ENCFF809PHA 502931 ENCODE Processing Pipeline 739a70dcbee45b647ec35975de8cfec9 https://www.encodeproject.org/files/ENCFF912SQI/@@download/ENCFF912SQI.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF696VDG bed narrowPeak conservative idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF159RMJ, ENCFF378UNO, ENCFF419RSJ, ENCFF809PHA 268496 ENCODE Processing Pipeline 7678dfc2d6593798172b9dda144f4f88 https://www.encodeproject.org/files/ENCFF696VDG/@@download/ENCFF696VDG.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF454PKG bigBed narrowPeak conservative idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF696VDG 534635 ENCODE Processing Pipeline 256e11c1761ee7422fb84ca28bacf955 https://www.encodeproject.org/files/ENCFF454PKG/@@download/ENCFF454PKG.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF890OUL bed narrowPeak conservative idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF001TDO, ENCFF175OWR, ENCFF296FGF, ENCFF403CMY 247962 ENCODE Processing Pipeline 384face4ca066bea89388f6015807f8d https://www.encodeproject.org/files/ENCFF890OUL/@@download/ENCFF890OUL.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF250MEG bigBed narrowPeak optimal idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF184XYF 754786 ENCODE Processing Pipeline cdea7f5c2e72ca3803edb96f48bbfb57 https://www.encodeproject.org/files/ENCFF250MEG/@@download/ENCFF250MEG.bigBed hg19 archived borderline replicate concordance, low read depth ENCFF848DOK bigBed narrowPeak conservative idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF890OUL 505473 ENCODE Processing Pipeline 1978e6391a0cd41246fdde27b1ebcd3d https://www.encodeproject.org/files/ENCFF848DOK/@@download/ENCFF848DOK.bigBed hg19 archived borderline replicate concordance, low read depth ENCFF184XYF bed narrowPeak optimal idr thresholded peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1, 2 ENCFF001TDO, ENCFF175OWR, ENCFF296FGF, ENCFF403CMY 446347 ENCODE Processing Pipeline 7667cee2f761f2918dac39d02674348a https://www.encodeproject.org/files/ENCFF184XYF/@@download/ENCFF184XYF.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF130DQU bam unfiltered alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 100 ENCFF055XKT, ENCFF807MUK, ENCFF968UUM 9318667967 ENCODE Processing Pipeline 367c83e4df8d77fa2ac53bcc05a07f25 https://www.encodeproject.org/files/ENCFF130DQU/@@download/ENCFF130DQU.bam hg19 released missing genetic modification characterization ENCFF461XCU bam unfiltered alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 100 ENCFF123LEB, ENCFF229NRD, ENCFF807MUK 10436702035 ENCODE Processing Pipeline 3eea8a8b636fd8e12f0509ee330b1ca1 https://www.encodeproject.org/files/ENCFF461XCU/@@download/ENCFF461XCU.bam hg19 released missing genetic modification characterization ENCFF123LEB fastq reads ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF229NRD 4824886729 Michael Snyder, Stanford 105e12cb51784992f3f8be4fba8bd63f SRA:SRR5111876 https://www.encodeproject.org/files/ENCFF123LEB/@@download/ENCFF123LEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF144ZOK/, /files/ENCFF514OKS/ released missing genetic modification characterization ENCFF968UUM fastq reads ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF055XKT 4304013696 Michael Snyder, Stanford c242e985012e71e2f4aca0c45e722ad2 SRA:SRR5111877 https://www.encodeproject.org/files/ENCFF968UUM/@@download/ENCFF968UUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF144ZOK/, /files/ENCFF514OKS/ released missing genetic modification characterization ENCFF055XKT fastq reads ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF968UUM 4403233188 Michael Snyder, Stanford 32d9b4361731a95c698f82352a468705 SRA:SRR5111877 https://www.encodeproject.org/files/ENCFF055XKT/@@download/ENCFF055XKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF144ZOK/, /files/ENCFF514OKS/ released missing genetic modification characterization ENCFF229NRD fastq reads ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF123LEB 4992703432 Michael Snyder, Stanford 2e7e62d520fd87eb51c2aae5cdb83471 SRA:SRR5111876 https://www.encodeproject.org/files/ENCFF229NRD/@@download/ENCFF229NRD.fastq.gz Illumina HiSeq 2000 /files/ENCFF144ZOK/, /files/ENCFF514OKS/ released missing genetic modification characterization ENCFF512JPN bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF055XKT, ENCFF807MUK, ENCFF968UUM 7846285260 ENCODE Processing Pipeline ec62d2bcca56ec3c7b2f9fc246b39caa https://www.encodeproject.org/files/ENCFF512JPN/@@download/ENCFF512JPN.bam hg19 released missing genetic modification characterization ENCFF187NQM bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF123LEB, ENCFF229NRD, ENCFF807MUK 8802767033 ENCODE Processing Pipeline 0c6d08a9602d27c082c2548e0b7779f0 https://www.encodeproject.org/files/ENCFF187NQM/@@download/ENCFF187NQM.bam hg19 released missing genetic modification characterization ENCFF905QBR bigWig signal p-value ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF267TAG, ENCFF512JPN 1642163013 ENCODE Processing Pipeline 39b36f57d74e52c68a104a0572c02d8e https://www.encodeproject.org/files/ENCFF905QBR/@@download/ENCFF905QBR.bigWig hg19 released missing genetic modification characterization ENCFF720FMQ bigWig signal p-value ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF187NQM, ENCFF267TAG, ENCFF512JPN 2058758858 ENCODE Processing Pipeline 98c595bbce876068e4652b498cb9f293 https://www.encodeproject.org/files/ENCFF720FMQ/@@download/ENCFF720FMQ.bigWig hg19 released missing genetic modification characterization ENCFF357VCS bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF187NQM, ENCFF267TAG 7293894 ENCODE Processing Pipeline 518350f213fd7e62dcdac573752d7de7 https://www.encodeproject.org/files/ENCFF357VCS/@@download/ENCFF357VCS.bed.gz hg19 released missing genetic modification characterization ENCFF200CGX bigBed narrowPeak conservative idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF617CTX 792914 ENCODE Processing Pipeline 222b556a854a463ee3ad77cddf9c8281 https://www.encodeproject.org/files/ENCFF200CGX/@@download/ENCFF200CGX.bigBed hg19 released missing genetic modification characterization ENCFF630AMB bigWig signal p-value ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF187NQM, ENCFF267TAG 2041132665 ENCODE Processing Pipeline 10849b143b4d3e36ffcbbcea749d1ae3 https://www.encodeproject.org/files/ENCFF630AMB/@@download/ENCFF630AMB.bigWig hg19 released missing genetic modification characterization ENCFF530EDL bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF267TAG, ENCFF512JPN 7255330 ENCODE Processing Pipeline 6633f9702b47a79ee6cd79f14b0037b6 https://www.encodeproject.org/files/ENCFF530EDL/@@download/ENCFF530EDL.bed.gz hg19 released missing genetic modification characterization ENCFF870WHI bigWig fold change over control ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF187NQM, ENCFF267TAG, ENCFF512JPN 2693717105 ENCODE Processing Pipeline 3c88cbe7fc7adb9fabd72700e1797a2a https://www.encodeproject.org/files/ENCFF870WHI/@@download/ENCFF870WHI.bigWig hg19 released missing genetic modification characterization ENCFF188IJE bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF187NQM, ENCFF267TAG, ENCFF512JPN 7382572 ENCODE Processing Pipeline d7a9ee4b6cd62d3ecdfb0efc045880bd https://www.encodeproject.org/files/ENCFF188IJE/@@download/ENCFF188IJE.bed.gz hg19 released missing genetic modification characterization ENCFF719JIJ bigBed narrowPeak optimal idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF447QUG 848249 ENCODE Processing Pipeline 24601f9e716df3360e722f230c73e98a https://www.encodeproject.org/files/ENCFF719JIJ/@@download/ENCFF719JIJ.bigBed hg19 released missing genetic modification characterization ENCFF350FJL bigWig fold change over control ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF187NQM, ENCFF267TAG 2047031691 ENCODE Processing Pipeline b685844ab06b2f8d78810ce33112f652 https://www.encodeproject.org/files/ENCFF350FJL/@@download/ENCFF350FJL.bigWig hg19 released missing genetic modification characterization ENCFF206SWP bigWig fold change over control ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF267TAG, ENCFF512JPN 1961835903 ENCODE Processing Pipeline fe6db8c22861ab3626dc0f35a12c42c5 https://www.encodeproject.org/files/ENCFF206SWP/@@download/ENCFF206SWP.bigWig hg19 released missing genetic modification characterization ENCFF607ZMI bigBed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF530EDL 13251257 ENCODE Processing Pipeline 8f7c30e906a0c82914a53aa1fc9eac2d https://www.encodeproject.org/files/ENCFF607ZMI/@@download/ENCFF607ZMI.bigBed hg19 released missing genetic modification characterization ENCFF913XDQ bigBed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF357VCS 13023649 ENCODE Processing Pipeline 526eda57c4c76f2fd2837e05514b0e99 https://www.encodeproject.org/files/ENCFF913XDQ/@@download/ENCFF913XDQ.bigBed hg19 released missing genetic modification characterization ENCFF401LSS bigBed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF188IJE 13125929 ENCODE Processing Pipeline 91800274e8f71575bb5626fc702b1ac1 https://www.encodeproject.org/files/ENCFF401LSS/@@download/ENCFF401LSS.bigBed hg19 released missing genetic modification characterization ENCFF617CTX bed narrowPeak conservative idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF188IJE, ENCFF357VCS, ENCFF530EDL 399859 ENCODE Processing Pipeline 4ebf8b06f0559b86426be620d5035f64 https://www.encodeproject.org/files/ENCFF617CTX/@@download/ENCFF617CTX.bed.gz hg19 released missing genetic modification characterization ENCFF447QUG bed narrowPeak optimal idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF188IJE, ENCFF357VCS, ENCFF530EDL 434983 ENCODE Processing Pipeline dccf07316b700c70e29bc268987e06b7 https://www.encodeproject.org/files/ENCFF447QUG/@@download/ENCFF447QUG.bed.gz hg19 released missing genetic modification characterization ENCFF120HZB bam unfiltered alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 100 ENCFF055XKT, ENCFF643CGH, ENCFF968UUM 9331172309 ENCODE Processing Pipeline a33ccc82fb196ddacfcf38eb9c591884 https://www.encodeproject.org/files/ENCFF120HZB/@@download/ENCFF120HZB.bam GRCh38 released missing genetic modification characterization ENCFF093LOE bam unfiltered alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 100 ENCFF123LEB, ENCFF229NRD, ENCFF643CGH 10451816636 ENCODE Processing Pipeline 5bce9222d870a771a385476ce05ced8e https://www.encodeproject.org/files/ENCFF093LOE/@@download/ENCFF093LOE.bam GRCh38 released missing genetic modification characterization ENCFF300AUR bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 100 ENCFF055XKT, ENCFF643CGH, ENCFF968UUM 7854969982 ENCODE Processing Pipeline fdb3b060053582b8198bd3619262199e https://www.encodeproject.org/files/ENCFF300AUR/@@download/ENCFF300AUR.bam GRCh38 released missing genetic modification characterization ENCFF996AFH bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 100 ENCFF123LEB, ENCFF229NRD, ENCFF643CGH 8812012236 ENCODE Processing Pipeline f84bd2a367445b3d27b5011ee01321cc https://www.encodeproject.org/files/ENCFF996AFH/@@download/ENCFF996AFH.bam GRCh38 released missing genetic modification characterization ENCFF686QXP bigWig signal p-value ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF752BZZ, ENCFF996AFH 1530051586 ENCODE Processing Pipeline aff3d1f32d4335fb1c28727c5fe00bfd https://www.encodeproject.org/files/ENCFF686QXP/@@download/ENCFF686QXP.bigWig GRCh38 released missing genetic modification characterization ENCFF340RSO bigWig signal p-value ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF300AUR, ENCFF752BZZ 1850013074 ENCODE Processing Pipeline e4ba84082c0f24bb594b7773c2101b5e https://www.encodeproject.org/files/ENCFF340RSO/@@download/ENCFF340RSO.bigWig GRCh38 released missing genetic modification characterization ENCFF547EAU bigWig signal p-value ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF300AUR, ENCFF752BZZ, ENCFF996AFH 2062513149 ENCODE Processing Pipeline 6b106f2f7451bfd6859bdeec2d1b7f15 https://www.encodeproject.org/files/ENCFF547EAU/@@download/ENCFF547EAU.bigWig GRCh38 released missing genetic modification characterization ENCFF849NDY bigWig fold change over control ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF752BZZ, ENCFF996AFH 2071061461 ENCODE Processing Pipeline da48e22ef61eb3f613c7c6b73e2494ff https://www.encodeproject.org/files/ENCFF849NDY/@@download/ENCFF849NDY.bigWig GRCh38 released missing genetic modification characterization ENCFF293WHT bigWig fold change over control ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF300AUR, ENCFF752BZZ 1974935755 ENCODE Processing Pipeline f2bc2c826d456aa3ddab0d22c7160b27 https://www.encodeproject.org/files/ENCFF293WHT/@@download/ENCFF293WHT.bigWig GRCh38 released missing genetic modification characterization ENCFF296TWV bigBed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF239NNB 13067166 ENCODE Processing Pipeline 2c16cd7c576526f5fb96c8f4b6f5e5e1 https://www.encodeproject.org/files/ENCFF296TWV/@@download/ENCFF296TWV.bigBed GRCh38 released missing genetic modification characterization ENCFF843CXH bigWig fold change over control ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF300AUR, ENCFF752BZZ, ENCFF996AFH 2697572506 ENCODE Processing Pipeline 362c9c52e2e020d7abac11af44edd570 https://www.encodeproject.org/files/ENCFF843CXH/@@download/ENCFF843CXH.bigWig GRCh38 released missing genetic modification characterization ENCFF641OLH bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF300AUR, ENCFF752BZZ, ENCFF996AFH 7391955 ENCODE Processing Pipeline ea535c3abe68c6feaba73c05f7a00e36 https://www.encodeproject.org/files/ENCFF641OLH/@@download/ENCFF641OLH.bed.gz GRCh38 released missing genetic modification characterization ENCFF521LOL bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF300AUR, ENCFF752BZZ 7251978 ENCODE Processing Pipeline 383c6e878ccec7b358f50069511bda8a https://www.encodeproject.org/files/ENCFF521LOL/@@download/ENCFF521LOL.bed.gz GRCh38 released missing genetic modification characterization ENCFF231IYV bigBed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF641OLH 13156168 ENCODE Processing Pipeline 53f8b4ec38c5915830e14b5c40706906 https://www.encodeproject.org/files/ENCFF231IYV/@@download/ENCFF231IYV.bigBed GRCh38 released missing genetic modification characterization ENCFF528UHH bigBed narrowPeak optimal idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF825ZIU 848545 ENCODE Processing Pipeline b657ec1885546c905ce02f7495add757 https://www.encodeproject.org/files/ENCFF528UHH/@@download/ENCFF528UHH.bigBed GRCh38 released missing genetic modification characterization ENCFF239NNB bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF752BZZ, ENCFF996AFH 7323908 ENCODE Processing Pipeline 2265d973a36e20077bfb27a294168d9c https://www.encodeproject.org/files/ENCFF239NNB/@@download/ENCFF239NNB.bed.gz GRCh38 released missing genetic modification characterization ENCFF558SDJ bed narrowPeak conservative idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF239NNB, ENCFF419RSJ, ENCFF521LOL, ENCFF641OLH 405121 ENCODE Processing Pipeline 0c6e95c472c512800fe287ed46a5c9c2 https://www.encodeproject.org/files/ENCFF558SDJ/@@download/ENCFF558SDJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF378AKK bigBed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF521LOL 13269013 ENCODE Processing Pipeline 25be5333ec787293deddb85c24dbf41a https://www.encodeproject.org/files/ENCFF378AKK/@@download/ENCFF378AKK.bigBed GRCh38 released missing genetic modification characterization ENCFF485VKN bigBed narrowPeak conservative idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF558SDJ 806399 ENCODE Processing Pipeline 29200d85d398fd65dac62ef596dcf68f https://www.encodeproject.org/files/ENCFF485VKN/@@download/ENCFF485VKN.bigBed GRCh38 released missing genetic modification characterization ENCFF825ZIU bed narrowPeak optimal idr thresholded peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF239NNB, ENCFF419RSJ, ENCFF521LOL, ENCFF641OLH 431257 ENCODE Processing Pipeline 4ab70d959a8e6194fb15b79f10ce6026 https://www.encodeproject.org/files/ENCFF825ZIU/@@download/ENCFF825ZIU.bed.gz GRCh38 released missing genetic modification characterization ENCFF206ARZ fastq reads ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 1 50 single-ended 1189586211 Richard Myers, HAIB 467f2ebabe696c458198205cdc226053 SRA:SRR5339393 https://www.encodeproject.org/files/ENCFF206ARZ/@@download/ENCFF206ARZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, moderate library complexity ENCFF252RBF fastq reads ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 1 50 single-ended 1125296409 Richard Myers, HAIB 4f0e8b31307e3a995099a7a7392facbd SRA:SRR5339392 https://www.encodeproject.org/files/ENCFF252RBF/@@download/ENCFF252RBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released low read depth, moderate library complexity ENCFF862RTJ bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF206ARZ, ENCFF807MUK 718270539 ENCODE Processing Pipeline 144b95e9b136afd3475ffe9564ee7434 https://www.encodeproject.org/files/ENCFF862RTJ/@@download/ENCFF862RTJ.bam hg19 released low read depth, moderate library complexity ENCFF742QOQ bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF252RBF, ENCFF807MUK 754715535 ENCODE Processing Pipeline 6360ff2ee76218c03cdb37b9efd5caf7 https://www.encodeproject.org/files/ENCFF742QOQ/@@download/ENCFF742QOQ.bam hg19 released low read depth, moderate library complexity ENCFF978AGA bigWig signal p-value ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862RTJ 905009147 ENCODE Processing Pipeline 6ac48a4d557d09f9dd8cdc7b21cb7844 https://www.encodeproject.org/files/ENCFF978AGA/@@download/ENCFF978AGA.bigWig hg19 released low read depth, moderate library complexity ENCFF300JRB bigWig signal p-value ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ 924957599 ENCODE Processing Pipeline e38deb9b6f49fcce4e865a2863c72029 https://www.encodeproject.org/files/ENCFF300JRB/@@download/ENCFF300JRB.bigWig hg19 released low read depth, moderate library complexity ENCFF812ZYM bigWig signal p-value ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ, ENCFF862RTJ 1005407653 ENCODE Processing Pipeline 1d372b2507a94c4da5a0189aeb470878 https://www.encodeproject.org/files/ENCFF812ZYM/@@download/ENCFF812ZYM.bigWig hg19 released low read depth, moderate library complexity ENCFF576VLX bigWig fold change over control ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ 653935114 ENCODE Processing Pipeline 4bb12e2bf0d251452f9f1c4c64fb968b https://www.encodeproject.org/files/ENCFF576VLX/@@download/ENCFF576VLX.bigWig hg19 released low read depth, moderate library complexity ENCFF352ACZ bigWig fold change over control ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862RTJ 591203467 ENCODE Processing Pipeline 7153a020df82e06caa25cd0c5c3a574f https://www.encodeproject.org/files/ENCFF352ACZ/@@download/ENCFF352ACZ.bigWig hg19 released low read depth, moderate library complexity ENCFF027MWG bigWig fold change over control ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ, ENCFF862RTJ 981625613 ENCODE Processing Pipeline e2c2fef280ae52141429c4d62fe608e5 https://www.encodeproject.org/files/ENCFF027MWG/@@download/ENCFF027MWG.bigWig hg19 released low read depth, moderate library complexity ENCFF870HGG bam unfiltered alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF206ARZ, ENCFF643CGH 1144151099 ENCODE Processing Pipeline 9edfb388cf89b0a64e431b040de20465 https://www.encodeproject.org/files/ENCFF870HGG/@@download/ENCFF870HGG.bam GRCh38 released low read depth, moderate library complexity ENCFF185CRQ bam unfiltered alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF252RBF, ENCFF643CGH 1113350402 ENCODE Processing Pipeline 2ca59d9d834c1342976759ccf09a642b https://www.encodeproject.org/files/ENCFF185CRQ/@@download/ENCFF185CRQ.bam GRCh38 released low read depth, moderate library complexity ENCFF564KCD bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF252RBF, ENCFF643CGH 754403095 ENCODE Processing Pipeline 5d0c9bea684814459d75f3b33609208e https://www.encodeproject.org/files/ENCFF564KCD/@@download/ENCFF564KCD.bam GRCh38 released low read depth, moderate library complexity ENCFF207NLX bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF206ARZ, ENCFF643CGH 717958307 ENCODE Processing Pipeline 6a1b6a04f9a88695bf844b4e96438ddb https://www.encodeproject.org/files/ENCFF207NLX/@@download/ENCFF207NLX.bam GRCh38 released low read depth, moderate library complexity ENCFF058DPW bigWig signal p-value ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF207NLX, ENCFF332SVJ, ENCFF709XAA 906441624 ENCODE Processing Pipeline 930911f2e51fe7e5ec0b70b4bfe0c1b8 https://www.encodeproject.org/files/ENCFF058DPW/@@download/ENCFF058DPW.bigWig GRCh38 released low read depth, moderate library complexity ENCFF308RKT bigWig signal p-value ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF332SVJ, ENCFF564KCD, ENCFF709XAA 1011894179 ENCODE Processing Pipeline 324588031893185def2c4b4b4d0dd27b https://www.encodeproject.org/files/ENCFF308RKT/@@download/ENCFF308RKT.bigWig GRCh38 released low read depth, moderate library complexity ENCFF197LZX bigWig signal p-value ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF207NLX, ENCFF332SVJ, ENCFF564KCD, ENCFF709XAA 1175973226 ENCODE Processing Pipeline a23a82e59bb8e945165e64babec59e58 https://www.encodeproject.org/files/ENCFF197LZX/@@download/ENCFF197LZX.bigWig GRCh38 released low read depth, moderate library complexity ENCFF728GJW bigWig fold change over control ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF207NLX, ENCFF332SVJ, ENCFF709XAA 589918499 ENCODE Processing Pipeline f8d456cb87e393ffb23664abe5aa74e0 https://www.encodeproject.org/files/ENCFF728GJW/@@download/ENCFF728GJW.bigWig GRCh38 released low read depth, moderate library complexity ENCFF267SKK bigWig fold change over control ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF332SVJ, ENCFF564KCD, ENCFF709XAA 651760488 ENCODE Processing Pipeline 45b57e81cace45d4e3540bbd258760ef https://www.encodeproject.org/files/ENCFF267SKK/@@download/ENCFF267SKK.bigWig GRCh38 released low read depth, moderate library complexity ENCFF932HVW bigWig fold change over control ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF207NLX, ENCFF332SVJ, ENCFF564KCD, ENCFF709XAA 978529953 ENCODE Processing Pipeline 727c9912fedb2bf0fcefc182abd79ef7 https://www.encodeproject.org/files/ENCFF932HVW/@@download/ENCFF932HVW.bigWig GRCh38 released low read depth, moderate library complexity ENCFF617KCZ bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF207NLX, ENCFF332SVJ, ENCFF709XAA 5841840 ENCODE Processing Pipeline 1b3caa2049a8b1d6339b5104dd2e9826 https://www.encodeproject.org/files/ENCFF617KCZ/@@download/ENCFF617KCZ.bed.gz GRCh38 released low read depth, moderate library complexity ENCFF161WZP bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF332SVJ, ENCFF564KCD, ENCFF709XAA 5869046 ENCODE Processing Pipeline d86dd6901457021f3560e99080d887d1 https://www.encodeproject.org/files/ENCFF161WZP/@@download/ENCFF161WZP.bed.gz GRCh38 released low read depth, moderate library complexity ENCFF534QFC bigBed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF161WZP 13486480 ENCODE Processing Pipeline 7e642d04a792e6fe82e98ccb464ffc0e https://www.encodeproject.org/files/ENCFF534QFC/@@download/ENCFF534QFC.bigBed GRCh38 released low read depth, moderate library complexity ENCFF636TZL bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF207NLX, ENCFF332SVJ, ENCFF564KCD, ENCFF709XAA 6373780 ENCODE Processing Pipeline 1509ce7c1c429fd1c7d7ff51e19b94d4 https://www.encodeproject.org/files/ENCFF636TZL/@@download/ENCFF636TZL.bed.gz GRCh38 released low read depth, moderate library complexity ENCFF812GVV bigBed narrowPeak optimal idr thresholded peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF626VDA 691149 ENCODE Processing Pipeline 7dfd8eaeb418179ca9974c49bebe64d6 https://www.encodeproject.org/files/ENCFF812GVV/@@download/ENCFF812GVV.bigBed GRCh38 released low read depth, moderate library complexity ENCFF116DXL bigBed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF617KCZ 13392542 ENCODE Processing Pipeline 57f4568567a6ddce486fbbac44a2941e https://www.encodeproject.org/files/ENCFF116DXL/@@download/ENCFF116DXL.bigBed GRCh38 released low read depth, moderate library complexity ENCFF651QMX bigBed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF636TZL 13579785 ENCODE Processing Pipeline 199f3dd641ee09595e9919aec1844030 https://www.encodeproject.org/files/ENCFF651QMX/@@download/ENCFF651QMX.bigBed GRCh38 released low read depth, moderate library complexity ENCFF626VDA bed narrowPeak optimal idr thresholded peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF161WZP, ENCFF419RSJ, ENCFF617KCZ, ENCFF636TZL 376439 ENCODE Processing Pipeline 073ab3f58f304ec82215a5ecfcb383b8 https://www.encodeproject.org/files/ENCFF626VDA/@@download/ENCFF626VDA.bed.gz GRCh38 released low read depth, moderate library complexity ENCFF064VGJ bam unfiltered alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF206ARZ, ENCFF807MUK 1142476952 ENCODE Processing Pipeline 878487d46c0c3e6ef33b63ec67697450 https://www.encodeproject.org/files/ENCFF064VGJ/@@download/ENCFF064VGJ.bam hg19 released low read depth, moderate library complexity ENCFF746AYT bam unfiltered alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF252RBF, ENCFF807MUK 1111610277 ENCODE Processing Pipeline 3976abffe3ad51329652fff8e6569080 https://www.encodeproject.org/files/ENCFF746AYT/@@download/ENCFF746AYT.bam hg19 released low read depth, moderate library complexity ENCFF606MZK bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862RTJ 5843860 ENCODE Processing Pipeline 951c843562da6d636f7e4f4647195342 https://www.encodeproject.org/files/ENCFF606MZK/@@download/ENCFF606MZK.bed.gz hg19 released low read depth, moderate library complexity ENCFF807NSC bigBed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF606MZK 13385130 ENCODE Processing Pipeline c4f97e229bf50809aba8cb867179d249 https://www.encodeproject.org/files/ENCFF807NSC/@@download/ENCFF807NSC.bigBed hg19 released low read depth, moderate library complexity ENCFF144PPR bed narrowPeak optimal idr thresholded peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF001TDO, ENCFF559ITE, ENCFF606MZK, ENCFF892HJT 370811 ENCODE Processing Pipeline ed341ef382b1729a4467c26b9d7afc00 https://www.encodeproject.org/files/ENCFF144PPR/@@download/ENCFF144PPR.bed.gz hg19 released low read depth, moderate library complexity ENCFF205RKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF144PPR 680314 ENCODE Processing Pipeline 3b9ad4731a6d7702cc07ff49e619fe1f https://www.encodeproject.org/files/ENCFF205RKZ/@@download/ENCFF205RKZ.bigBed hg19 released low read depth, moderate library complexity ENCFF892HJT bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ 5874459 ENCODE Processing Pipeline f7b54c7101852b2eae0e6453528c8cd5 https://www.encodeproject.org/files/ENCFF892HJT/@@download/ENCFF892HJT.bed.gz hg19 released low read depth, moderate library complexity ENCFF111EWY bigBed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF559ITE 13550444 ENCODE Processing Pipeline 61e6d94202a567d6819c1cf3bffaccb7 https://www.encodeproject.org/files/ENCFF111EWY/@@download/ENCFF111EWY.bigBed hg19 released low read depth, moderate library complexity ENCFF559ITE bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ, ENCFF862RTJ 6386406 ENCODE Processing Pipeline 1bc4bd7836fca6a87e852936ce357253 https://www.encodeproject.org/files/ENCFF559ITE/@@download/ENCFF559ITE.bed.gz hg19 released low read depth, moderate library complexity ENCFF604ADM bigBed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF892HJT 13476175 ENCODE Processing Pipeline e998e9aed28b80d961112669ca158bee https://www.encodeproject.org/files/ENCFF604ADM/@@download/ENCFF604ADM.bigBed hg19 released low read depth, moderate library complexity ENCFF841DWU bam unfiltered alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF807MUK, ENCFF898YVQ 1200873731 ENCODE Processing Pipeline 28fa970bee136d60d15042167038133d https://www.encodeproject.org/files/ENCFF841DWU/@@download/ENCFF841DWU.bam hg19 released low read depth, antibody characterized with exemption ENCFF316KPP bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF807MUK, ENCFF898YVQ 953388408 ENCODE Processing Pipeline 6f68d741fb24b5e04e9dc0284f651347 https://www.encodeproject.org/files/ENCFF316KPP/@@download/ENCFF316KPP.bam hg19 released low read depth, antibody characterized with exemption ENCFF452QAK bam unfiltered alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF807MUK 972435510 ENCODE Processing Pipeline 42b8e82ea5bc7c15945de7ab6c1808da https://www.encodeproject.org/files/ENCFF452QAK/@@download/ENCFF452QAK.bam hg19 released low read depth, antibody characterized with exemption ENCFF494PPW bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF807MUK 763649990 ENCODE Processing Pipeline 478e80cda63ef971bb7f0bd5edd347e2 https://www.encodeproject.org/files/ENCFF494PPW/@@download/ENCFF494PPW.bam hg19 released low read depth, antibody characterized with exemption ENCFF964CLX bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF316KPP 413230675 ENCODE Processing Pipeline 95b83c5d1933c04c40af4f2870161189 https://www.encodeproject.org/files/ENCFF964CLX/@@download/ENCFF964CLX.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF687WTU bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF017YFK, ENCFF316KPP, ENCFF494PPW, ENCFF956QBZ 6975912 ENCODE Processing Pipeline 89cb3cdf91595466b156a736d8322ab8 https://www.encodeproject.org/files/ENCFF687WTU/@@download/ENCFF687WTU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF854BPP bed narrowPeak optimal idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF001TDO, ENCFF529XXM, ENCFF687WTU, ENCFF987INA 526110 ENCODE Processing Pipeline 387838ea26f2691bffe6e0e4c7833712 https://www.encodeproject.org/files/ENCFF854BPP/@@download/ENCFF854BPP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF706SVF bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF316KPP 631156367 ENCODE Processing Pipeline 306b45727baae2514354137c329a3074 https://www.encodeproject.org/files/ENCFF706SVF/@@download/ENCFF706SVF.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF529XXM bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF316KPP 6344339 ENCODE Processing Pipeline 43f83bf1dc78f5a3aef040cdef281e49 https://www.encodeproject.org/files/ENCFF529XXM/@@download/ENCFF529XXM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF987INA bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF494PPW, ENCFF956QBZ 6056552 ENCODE Processing Pipeline d5f2c0cab1ba29c36378a3240e1be3b6 https://www.encodeproject.org/files/ENCFF987INA/@@download/ENCFF987INA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF160CKG bigBed narrowPeak optimal idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF854BPP 1291981 ENCODE Processing Pipeline 7210d5a66306ec3f217aaa905be372bd https://www.encodeproject.org/files/ENCFF160CKG/@@download/ENCFF160CKG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF050EGT bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF529XXM 12591067 ENCODE Processing Pipeline 622aa1830b24fd1f7e6c2d3c3c5f2e85 https://www.encodeproject.org/files/ENCFF050EGT/@@download/ENCFF050EGT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF610FZT bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF987INA 12623856 ENCODE Processing Pipeline eacadd17c24d672a43fc2719277a86a9 https://www.encodeproject.org/files/ENCFF610FZT/@@download/ENCFF610FZT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF767HZW bigBed narrowPeak conservative idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF980HPT 1007465 ENCODE Processing Pipeline 77f57c52aab4b2c4b0334fc2daaac1c1 https://www.encodeproject.org/files/ENCFF767HZW/@@download/ENCFF767HZW.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF388IRG bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF687WTU 12525701 ENCODE Processing Pipeline 3f1e017e2d2f0b57fc11b0b8bbd188de https://www.encodeproject.org/files/ENCFF388IRG/@@download/ENCFF388IRG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF980HPT bed narrowPeak conservative idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF001TDO, ENCFF529XXM, ENCFF687WTU, ENCFF987INA 497434 ENCODE Processing Pipeline b5aba6d471494184120c4a5b3f429e1b https://www.encodeproject.org/files/ENCFF980HPT/@@download/ENCFF980HPT.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF898YVQ fastq reads ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 1 50 single-ended 1089441455 Richard Myers, HAIB c72fc2f0d82bed2984f7d2303aa6cfcb SRA:SRR5338645 https://www.encodeproject.org/files/ENCFF898YVQ/@@download/ENCFF898YVQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF484RXR/ released low read depth, antibody characterized with exemption ENCFF211BUP fastq reads ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 1 50 single-ended 878927804 Richard Myers, HAIB 70f090d0af98ddae984ff7285cca81d7 SRA:SRR5338646 https://www.encodeproject.org/files/ENCFF211BUP/@@download/ENCFF211BUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF252PYF/ released low read depth, antibody characterized with exemption ENCFF778QKS bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF807MUK, ENCFF898YVQ 953388380 ENCODE Processing Pipeline b4747c161ca790813e3b899d872fee3b https://www.encodeproject.org/files/ENCFF778QKS/@@download/ENCFF778QKS.bam hg19 archived low read depth, antibody characterized with exemption ENCFF773JVR bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF807MUK 763649961 ENCODE Processing Pipeline 0b56ebdeb4d3b883cabb3100e0154fec https://www.encodeproject.org/files/ENCFF773JVR/@@download/ENCFF773JVR.bam hg19 archived low read depth, antibody characterized with exemption ENCFF890HJH bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF778QKS 629194363 ENCODE Processing Pipeline dfc9158d5d95d881cb9250f743d9b59b https://www.encodeproject.org/files/ENCFF890HJH/@@download/ENCFF890HJH.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF919VDD bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF017YFK, ENCFF316KPP, ENCFF494PPW, ENCFF956QBZ 965889598 ENCODE Processing Pipeline abd5bf64cc2881ac7ebd91b44cc18d72 https://www.encodeproject.org/files/ENCFF919VDD/@@download/ENCFF919VDD.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF239TZH bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF494PPW, ENCFF956QBZ 426270505 ENCODE Processing Pipeline 5b54b504552b36312b7d987b7c848586 https://www.encodeproject.org/files/ENCFF239TZH/@@download/ENCFF239TZH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF433CWQ bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF494PPW, ENCFF956QBZ 330441710 ENCODE Processing Pipeline 0644e9fec4280f9e09e1ae4b72ddba81 https://www.encodeproject.org/files/ENCFF433CWQ/@@download/ENCFF433CWQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF624PGT bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF778QKS 405357927 ENCODE Processing Pipeline 450d059d6d6d38af6a3bb909ba260d94 https://www.encodeproject.org/files/ENCFF624PGT/@@download/ENCFF624PGT.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF430AFG bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF263YLX 12650468 ENCODE Processing Pipeline 879da7cb8b94391605254a5da85fc22c https://www.encodeproject.org/files/ENCFF430AFG/@@download/ENCFF430AFG.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF618FBU bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF778QKS 6474544 ENCODE Processing Pipeline 3e79ba93fd8141123efa25622e40714d https://www.encodeproject.org/files/ENCFF618FBU/@@download/ENCFF618FBU.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF140EHF bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF017YFK, ENCFF316KPP, ENCFF494PPW, ENCFF956QBZ 785583806 ENCODE Processing Pipeline 3770480dbf275f79b89905842b7f0a01 https://www.encodeproject.org/files/ENCFF140EHF/@@download/ENCFF140EHF.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF171YNB bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF017YFK, ENCFF773JVR, ENCFF778QKS, ENCFF956QBZ 7021232 ENCODE Processing Pipeline 04216611ece5f8fe19fb78b3a01656be https://www.encodeproject.org/files/ENCFF171YNB/@@download/ENCFF171YNB.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF059CJC bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF618FBU 12601971 ENCODE Processing Pipeline dfa7594b98c41f56b2a1d35e88925751 https://www.encodeproject.org/files/ENCFF059CJC/@@download/ENCFF059CJC.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF906CBH bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF171YNB 12525076 ENCODE Processing Pipeline ecc672d3899242168cb37873fd9b8171 https://www.encodeproject.org/files/ENCFF906CBH/@@download/ENCFF906CBH.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF263YLX bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF773JVR, ENCFF956QBZ 6232967 ENCODE Processing Pipeline 42f6213ed26eca9dab6e123818cfbbeb https://www.encodeproject.org/files/ENCFF263YLX/@@download/ENCFF263YLX.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF815UJE bam unfiltered alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF643CGH 973581067 ENCODE Processing Pipeline 1c210e7483f2379b5b76b75982c432b3 https://www.encodeproject.org/files/ENCFF815UJE/@@download/ENCFF815UJE.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF122VCH bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF643CGH 763401977 ENCODE Processing Pipeline 033aab42fa144b50216773ac077250a0 https://www.encodeproject.org/files/ENCFF122VCH/@@download/ENCFF122VCH.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF852FHU bam unfiltered alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF643CGH, ENCFF898YVQ 1202042668 ENCODE Processing Pipeline ca3c3d6d8cad34dc085d9d1b612625c4 https://www.encodeproject.org/files/ENCFF852FHU/@@download/ENCFF852FHU.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF591JSM bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF643CGH, ENCFF898YVQ 953123176 ENCODE Processing Pipeline 8f8ad10ad22a6bf5105768f6dd6d2fc4 https://www.encodeproject.org/files/ENCFF591JSM/@@download/ENCFF591JSM.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF833YOX bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF591JSM, ENCFF982GQU 634294474 ENCODE Processing Pipeline 21ab5107dca845db980bd6fead1dbb5f https://www.encodeproject.org/files/ENCFF833YOX/@@download/ENCFF833YOX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF218COB bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF122VCH, ENCFF341IVK 544441405 ENCODE Processing Pipeline 7533ba143bc5f877b4944ca3a9fb0608 https://www.encodeproject.org/files/ENCFF218COB/@@download/ENCFF218COB.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF988GOB bigWig signal p-value ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF122VCH, ENCFF341IVK, ENCFF591JSM, ENCFF982GQU 791960466 ENCODE Processing Pipeline 9d9aba695a0d60f4f058b4a69d3c6853 https://www.encodeproject.org/files/ENCFF988GOB/@@download/ENCFF988GOB.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF455JXT bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF591JSM, ENCFF982GQU 411889800 ENCODE Processing Pipeline ce79698c5440f3d53eda5a23f98b25b6 https://www.encodeproject.org/files/ENCFF455JXT/@@download/ENCFF455JXT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF877ROF bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF122VCH, ENCFF341IVK 328548634 ENCODE Processing Pipeline 4341e5e98f620043a1309483afe5160b https://www.encodeproject.org/files/ENCFF877ROF/@@download/ENCFF877ROF.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF170YDM bigWig fold change over control ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF122VCH, ENCFF341IVK, ENCFF591JSM, ENCFF982GQU 804804710 ENCODE Processing Pipeline f89cec93acbe36a3e62da8f2fb5e1127 https://www.encodeproject.org/files/ENCFF170YDM/@@download/ENCFF170YDM.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF913TST bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF122VCH, ENCFF341IVK 6038348 ENCODE Processing Pipeline bbe989a2003c10d31430b492e098e596 https://www.encodeproject.org/files/ENCFF913TST/@@download/ENCFF913TST.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF608SAA bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF122VCH, ENCFF341IVK, ENCFF591JSM, ENCFF982GQU 6974963 ENCODE Processing Pipeline 772fb4f4e9dc4748504db79c8e0b66e8 https://www.encodeproject.org/files/ENCFF608SAA/@@download/ENCFF608SAA.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF920OTS bigBed narrowPeak optimal idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF516QUC 1010022 ENCODE Processing Pipeline e2073c89cee3553183fe0cb3a151b307 https://www.encodeproject.org/files/ENCFF920OTS/@@download/ENCFF920OTS.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF080WBH bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF608SAA 12537346 ENCODE Processing Pipeline eb13750c9d7e1a8d8f741922eff2c601 https://www.encodeproject.org/files/ENCFF080WBH/@@download/ENCFF080WBH.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF399EAI bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF591JSM, ENCFF982GQU 6366938 ENCODE Processing Pipeline 9af86459b95458219c59126e4163da00 https://www.encodeproject.org/files/ENCFF399EAI/@@download/ENCFF399EAI.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF829VUH bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF399EAI 12619745 ENCODE Processing Pipeline 7a4307eaba38a1b96c7852a8b54795ee https://www.encodeproject.org/files/ENCFF829VUH/@@download/ENCFF829VUH.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF608OQO bigBed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF913TST 12621175 ENCODE Processing Pipeline 5536677afe98077b47442e1044da41e3 https://www.encodeproject.org/files/ENCFF608OQO/@@download/ENCFF608OQO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF516QUC bed narrowPeak optimal idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF399EAI, ENCFF419RSJ, ENCFF608SAA, ENCFF913TST 496920 ENCODE Processing Pipeline 63f4d4e413071de2bd748c615b5762c9 https://www.encodeproject.org/files/ENCFF516QUC/@@download/ENCFF516QUC.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF822TCG bigBed narrowPeak conservative idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF903OKN 962156 ENCODE Processing Pipeline 93d7f50cda2ad1d6b5029084d8705ffb https://www.encodeproject.org/files/ENCFF822TCG/@@download/ENCFF822TCG.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF523JXM bigBed narrowPeak optimal idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF690DDP 1002488 ENCODE Processing Pipeline 7a6c154aa4d9362eb6f35e57ffb56716 https://www.encodeproject.org/files/ENCFF523JXM/@@download/ENCFF523JXM.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF903OKN bed narrowPeak conservative idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF001TDO, ENCFF171YNB, ENCFF263YLX, ENCFF618FBU 460341 ENCODE Processing Pipeline b23b625c65b75377136037732bae84b9 https://www.encodeproject.org/files/ENCFF903OKN/@@download/ENCFF903OKN.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF690DDP bed narrowPeak optimal idr thresholded peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1, 2 ENCFF001TDO, ENCFF171YNB, ENCFF263YLX, ENCFF618FBU 490398 ENCODE Processing Pipeline 6707f2d1389cc2c8e7c8e9d240c4bfbf https://www.encodeproject.org/files/ENCFF690DDP/@@download/ENCFF690DDP.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF328YGT bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF862QDQ 1355078824 ENCODE Processing Pipeline d51942e27bfc0c308981318119b3d16b https://www.encodeproject.org/files/ENCFF328YGT/@@download/ENCFF328YGT.bam hg19 released low read depth, antibody characterized with exemption ENCFF028TLV bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF807MUK 1474059950 ENCODE Processing Pipeline edb1c5d54d25c020733371f0b97ef98f https://www.encodeproject.org/files/ENCFF028TLV/@@download/ENCFF028TLV.bam hg19 released low read depth, antibody characterized with exemption ENCFF862QDQ fastq reads ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1291003577 Richard Myers, HAIB 08e3a4bb9de3b38325a675afe36d71ad SRA:SRR5339419 https://www.encodeproject.org/files/ENCFF862QDQ/@@download/ENCFF862QDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF090NGH/ released low read depth, antibody characterized with exemption ENCFF221TOX fastq reads ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1357461397 Richard Myers, HAIB 6401ef9b83258152f99c6e0b021fdd52 SRA:SRR5339420 https://www.encodeproject.org/files/ENCFF221TOX/@@download/ENCFF221TOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF180PND/, /files/ENCFF381XXA/ released low read depth, antibody characterized with exemption ENCFF748DIW bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF862QDQ 765457821 ENCODE Processing Pipeline c8984cb355c0e48c15ff5d268459c790 https://www.encodeproject.org/files/ENCFF748DIW/@@download/ENCFF748DIW.bam hg19 released low read depth, antibody characterized with exemption ENCFF328CQA bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF807MUK 1059935076 ENCODE Processing Pipeline b27f486549583a87718892b6f276c619 https://www.encodeproject.org/files/ENCFF328CQA/@@download/ENCFF328CQA.bam hg19 released low read depth, antibody characterized with exemption ENCFF889DQQ bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 842665385 ENCODE Processing Pipeline 2f1d3d7b12cb13afc9aeb9eb37d4571a https://www.encodeproject.org/files/ENCFF889DQQ/@@download/ENCFF889DQQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF634OUT bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 787851311 ENCODE Processing Pipeline dd04b7437a771ba008a33e1f3f1ba5d7 https://www.encodeproject.org/files/ENCFF634OUT/@@download/ENCFF634OUT.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF325AYV bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 695339973 ENCODE Processing Pipeline e9fc0a224a51cda279feb3642b07e558 https://www.encodeproject.org/files/ENCFF325AYV/@@download/ENCFF325AYV.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF269OKC bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 523603722 ENCODE Processing Pipeline 40c224470709d2a5106de329eb7c3503 https://www.encodeproject.org/files/ENCFF269OKC/@@download/ENCFF269OKC.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF146RPS bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF389NMB 13322346 ENCODE Processing Pipeline 6ae2251fecc619b834e2997d74f4424f https://www.encodeproject.org/files/ENCFF146RPS/@@download/ENCFF146RPS.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF273ZDS bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 6189524 ENCODE Processing Pipeline 4c1449a60b201cba321fb887fa5900c1 https://www.encodeproject.org/files/ENCFF273ZDS/@@download/ENCFF273ZDS.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF278OPV bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF838ABE 13229914 ENCODE Processing Pipeline 1b4e67d0a16849bb571ace21449fe4bf https://www.encodeproject.org/files/ENCFF278OPV/@@download/ENCFF278OPV.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF295FCL bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF328CQA, ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 961980690 ENCODE Processing Pipeline 1c7ccf0755cab7e5ef2ca3cf3f6565c3 https://www.encodeproject.org/files/ENCFF295FCL/@@download/ENCFF295FCL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF327KPH bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF328CQA, ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 1023543817 ENCODE Processing Pipeline eff04674d8189dfcdab691b82b03bfa6 https://www.encodeproject.org/files/ENCFF327KPH/@@download/ENCFF327KPH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF838ABE bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 6510385 ENCODE Processing Pipeline fb26371bb0f418ebd525bfad0e747028 https://www.encodeproject.org/files/ENCFF838ABE/@@download/ENCFF838ABE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF389NMB bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF328CQA, ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 6897786 ENCODE Processing Pipeline b87cc44f43fa933e8cb605b912bbdffb https://www.encodeproject.org/files/ENCFF389NMB/@@download/ENCFF389NMB.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF154VEE bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF273ZDS 13399987 ENCODE Processing Pipeline 81c1c6e130e8d37be8697d25b2ebeef3 https://www.encodeproject.org/files/ENCFF154VEE/@@download/ENCFF154VEE.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF010SVS bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF862QDQ 1359618510 ENCODE Processing Pipeline fc67f918c499fdf6dc3eece4cb1a3619 https://www.encodeproject.org/files/ENCFF010SVS/@@download/ENCFF010SVS.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF870XDV bam unfiltered alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF643CGH 1477620199 ENCODE Processing Pipeline 6e132f0fcbf4703b8aa52db5031d10cf https://www.encodeproject.org/files/ENCFF870XDV/@@download/ENCFF870XDV.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF127DWU bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF862QDQ 768707575 ENCODE Processing Pipeline ab554e2454afe47ba208a1a45fa727f0 https://www.encodeproject.org/files/ENCFF127DWU/@@download/ENCFF127DWU.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF890TFD bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF643CGH 1065261651 ENCODE Processing Pipeline dde22eb23ff7454fe954b5ee07381ddf https://www.encodeproject.org/files/ENCFF890TFD/@@download/ENCFF890TFD.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF994DRD bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF127DWU, ENCFF290EGQ, ENCFF940GKZ 779004221 ENCODE Processing Pipeline ea45f1dd3ef82686731ec08992eb2b3d https://www.encodeproject.org/files/ENCFF994DRD/@@download/ENCFF994DRD.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF273DCX bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 986128164 ENCODE Processing Pipeline c6a71b07d8d6082ffaa85b0ea6fa878c https://www.encodeproject.org/files/ENCFF273DCX/@@download/ENCFF273DCX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF729KEI bigWig signal p-value ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF127DWU, ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 1017242398 ENCODE Processing Pipeline c965d2dd69e4a6fb598bb626c5823ba3 https://www.encodeproject.org/files/ENCFF729KEI/@@download/ENCFF729KEI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF819GZC bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 696688768 ENCODE Processing Pipeline 7010504d15ab0f5ddde4652c1db729ac https://www.encodeproject.org/files/ENCFF819GZC/@@download/ENCFF819GZC.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF242RTA bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF127DWU, ENCFF290EGQ, ENCFF940GKZ 508413746 ENCODE Processing Pipeline d3ca5c1b4385b376e2353b8657365754 https://www.encodeproject.org/files/ENCFF242RTA/@@download/ENCFF242RTA.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF930HBS bigWig fold change over control ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF127DWU, ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 1005662567 ENCODE Processing Pipeline adc189b586d25e9b9e1e956384a870db https://www.encodeproject.org/files/ENCFF930HBS/@@download/ENCFF930HBS.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF219QPR bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF758YNV 13372096 ENCODE Processing Pipeline 7cd777aee8ead7975ff5dd6ee47a9d6b https://www.encodeproject.org/files/ENCFF219QPR/@@download/ENCFF219QPR.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF919MOX bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 6355816 ENCODE Processing Pipeline ea1ff62e038fdfede8feeb236c14435e https://www.encodeproject.org/files/ENCFF919MOX/@@download/ENCFF919MOX.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF414HSP bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF919MOX 13203451 ENCODE Processing Pipeline faf08a7583ff7b30cb26b6e29d7165a8 https://www.encodeproject.org/files/ENCFF414HSP/@@download/ENCFF414HSP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF097WEC bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF127DWU, ENCFF290EGQ, ENCFF890TFD, ENCFF940GKZ 6775463 ENCODE Processing Pipeline 322f3f574a126800de6b85e7d7631f94 https://www.encodeproject.org/files/ENCFF097WEC/@@download/ENCFF097WEC.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF758YNV bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF127DWU, ENCFF290EGQ, ENCFF940GKZ 5900512 ENCODE Processing Pipeline ca0652e00c4645dd6c4d0798080dab6c https://www.encodeproject.org/files/ENCFF758YNV/@@download/ENCFF758YNV.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF989DMQ bigBed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF097WEC 13351735 ENCODE Processing Pipeline 4bdb188a8cc681aecf3fdfec894c6d7d https://www.encodeproject.org/files/ENCFF989DMQ/@@download/ENCFF989DMQ.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF229XLK bigBed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF070SOX 792956 ENCODE Processing Pipeline b09e13c00a051ac9777d37749592512e https://www.encodeproject.org/files/ENCFF229XLK/@@download/ENCFF229XLK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF013PBU bed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF097WEC, ENCFF419RSJ, ENCFF758YNV, ENCFF919MOX 363592 ENCODE Processing Pipeline 1553a710bfa67ca0e1dd06818a2a2b47 https://www.encodeproject.org/files/ENCFF013PBU/@@download/ENCFF013PBU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF012HPV bigBed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF013PBU 754252 ENCODE Processing Pipeline 005f577663d2792df91f64b4779bab56 https://www.encodeproject.org/files/ENCFF012HPV/@@download/ENCFF012HPV.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF070SOX bed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF097WEC, ENCFF419RSJ, ENCFF758YNV, ENCFF919MOX 389087 ENCODE Processing Pipeline 68fb55ca044b0b63e2826cc780bce97f https://www.encodeproject.org/files/ENCFF070SOX/@@download/ENCFF070SOX.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF773EXP bed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF273ZDS, ENCFF389NMB, ENCFF838ABE 308453 ENCODE Processing Pipeline 5a747a760a5777ccaa80f3becbd61f2c https://www.encodeproject.org/files/ENCFF773EXP/@@download/ENCFF773EXP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF788LSH bed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF273ZDS, ENCFF389NMB, ENCFF838ABE 324597 ENCODE Processing Pipeline 63ff827b2e1cbb2c9e897d6d4273086c https://www.encodeproject.org/files/ENCFF788LSH/@@download/ENCFF788LSH.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF741OJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF773EXP 541265 ENCODE Processing Pipeline bb9e413975b4070784dfa9cda53f9387 https://www.encodeproject.org/files/ENCFF741OJZ/@@download/ENCFF741OJZ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF298WZV bigBed narrowPeak optimal idr thresholded peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF788LSH 562614 ENCODE Processing Pipeline 920d8806b19a39ba983d7ee87e4be850 https://www.encodeproject.org/files/ENCFF298WZV/@@download/ENCFF298WZV.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF042TMG bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF807MUK 638929594 ENCODE Processing Pipeline 0565e8b7d3d9e1c775a588011c78486a https://www.encodeproject.org/files/ENCFF042TMG/@@download/ENCFF042TMG.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF356IQW bam unfiltered alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF807MUK 840884651 ENCODE Processing Pipeline 312f717840619e10f26792a24d5559d9 https://www.encodeproject.org/files/ENCFF356IQW/@@download/ENCFF356IQW.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF097PEG bam unfiltered alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF807MUK 1855510136 ENCODE Processing Pipeline 44218cccaa1ef852b2a45919c05a0db4 https://www.encodeproject.org/files/ENCFF097PEG/@@download/ENCFF097PEG.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF192MTR bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF807MUK 1311840478 ENCODE Processing Pipeline 597915355102894352f2f4822ea10724 https://www.encodeproject.org/files/ENCFF192MTR/@@download/ENCFF192MTR.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF340IKA bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF042TMG, ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 1093636568 ENCODE Processing Pipeline 828f375007046a08aa78cd46c0f4e120 https://www.encodeproject.org/files/ENCFF340IKA/@@download/ENCFF340IKA.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF279XHL bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF042TMG, ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 1110825394 ENCODE Processing Pipeline 27e65fa48a620bc59797932404bd2d96 https://www.encodeproject.org/files/ENCFF279XHL/@@download/ENCFF279XHL.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF617HUR bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 6221045 ENCODE Processing Pipeline 9f26e32201c2110c70ee688f83fbc51b https://www.encodeproject.org/files/ENCFF617HUR/@@download/ENCFF617HUR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF525BTB bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF042TMG, ENCFF200LFK, ENCFF321UJV 5933870 ENCODE Processing Pipeline 9fb64c313269a4d08781b473454a6aab https://www.encodeproject.org/files/ENCFF525BTB/@@download/ENCFF525BTB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF348QEP bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF042TMG, ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 6708482 ENCODE Processing Pipeline 7f1fafa3f9e0c95359a70eed125b0731 https://www.encodeproject.org/files/ENCFF348QEP/@@download/ENCFF348QEP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF561PNC bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF617HUR 13614124 ENCODE Processing Pipeline a88f3bb60945fe94c2c1ec656e9aff2c https://www.encodeproject.org/files/ENCFF561PNC/@@download/ENCFF561PNC.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF375NLZ bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF525BTB 13418687 ENCODE Processing Pipeline 573d212e4a2332fec82fd4fd6b0b469d https://www.encodeproject.org/files/ENCFF375NLZ/@@download/ENCFF375NLZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF605JHL bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF348QEP 13540136 ENCODE Processing Pipeline 4b41215dbe0fdd067619131947e07113 https://www.encodeproject.org/files/ENCFF605JHL/@@download/ENCFF605JHL.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF401IAH bigBed narrowPeak conservative idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF192NOU 968009 ENCODE Processing Pipeline 08e3ae1047db23560af1caf0ae2d1a85 https://www.encodeproject.org/files/ENCFF401IAH/@@download/ENCFF401IAH.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF266KLW bed narrowPeak optimal idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF348QEP, ENCFF525BTB, ENCFF617HUR 507212 ENCODE Processing Pipeline 2732be2073a35bea7c8e899b526ee7f5 https://www.encodeproject.org/files/ENCFF266KLW/@@download/ENCFF266KLW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF192NOU bed narrowPeak conservative idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF348QEP, ENCFF525BTB, ENCFF617HUR 477460 ENCODE Processing Pipeline d5d154a068e0edd0c0b6307c826c19cc https://www.encodeproject.org/files/ENCFF192NOU/@@download/ENCFF192NOU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF711XOX bigBed narrowPeak optimal idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF266KLW 1015746 ENCODE Processing Pipeline 578cee37649bdaf175d28eb460562164 https://www.encodeproject.org/files/ENCFF711XOX/@@download/ENCFF711XOX.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF182FSV fastq reads ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 1 50 single-ended 1728361818 Richard Myers, HAIB 5f216a8a4959c745a685addd1f750e04 SRA:SRR5338582 https://www.encodeproject.org/files/ENCFF182FSV/@@download/ENCFF182FSV.fastq.gz Illumina HiSeq 2000 /files/ENCFF123QZN/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF264HRE fastq reads ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 1 50 single-ended 758986366 Richard Myers, HAIB f0e8919d2f6159f5fe0c394a5d90637c SRA:SRR5338581 https://www.encodeproject.org/files/ENCFF264HRE/@@download/ENCFF264HRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF994LTR bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF807MUK 1311840450 ENCODE Processing Pipeline 44693baf46b096f7272e14182884f8a1 https://www.encodeproject.org/files/ENCFF994LTR/@@download/ENCFF994LTR.bam hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF812LHP bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF807MUK 638929566 ENCODE Processing Pipeline 6fdc7e9c91f6bfb71e6fc705069db679 https://www.encodeproject.org/files/ENCFF812LHP/@@download/ENCFF812LHP.bam hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF079NNQ bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 930687673 ENCODE Processing Pipeline 07d035acd5ca92c41a7dab10953e21c3 https://www.encodeproject.org/files/ENCFF079NNQ/@@download/ENCFF079NNQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF273KXA bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF200LFK, ENCFF321UJV, ENCFF812LHP, ENCFF994LTR 1087394845 ENCODE Processing Pipeline 1d49886b1a83bb5fa1710f54ea6e5bad https://www.encodeproject.org/files/ENCFF273KXA/@@download/ENCFF273KXA.bigWig hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF156KWH bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 846313788 ENCODE Processing Pipeline 8aefe1584d423547c6aa672e5fbe99ad https://www.encodeproject.org/files/ENCFF156KWH/@@download/ENCFF156KWH.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF832ZSJ bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF042TMG, ENCFF200LFK, ENCFF321UJV 732473344 ENCODE Processing Pipeline 7e69e49e405c006dd2674c5d59771381 https://www.encodeproject.org/files/ENCFF832ZSJ/@@download/ENCFF832ZSJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF923QKQ bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF042TMG, ENCFF200LFK, ENCFF321UJV 574013340 ENCODE Processing Pipeline e245f365764089e2161225555c0a0ed0 https://www.encodeproject.org/files/ENCFF923QKQ/@@download/ENCFF923QKQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF972IHG bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF200LFK, ENCFF321UJV, ENCFF812LHP, ENCFF994LTR 1101790805 ENCODE Processing Pipeline 50b3678df723b7decc85ff2e136ba18f https://www.encodeproject.org/files/ENCFF972IHG/@@download/ENCFF972IHG.bigWig hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF495GMC bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF200LFK, ENCFF321UJV, ENCFF812LHP, ENCFF994LTR 6844457 ENCODE Processing Pipeline 88f3349d5f6ab36c33d1b429dcac3f86 https://www.encodeproject.org/files/ENCFF495GMC/@@download/ENCFF495GMC.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF658HKF bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF150BYS 13448183 ENCODE Processing Pipeline 7063e519bfae5a555a4024bdaf544961 https://www.encodeproject.org/files/ENCFF658HKF/@@download/ENCFF658HKF.bigBed hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF742DVI bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF495GMC 13544136 ENCODE Processing Pipeline 8cdf291f37aadf20b5f7529cc7708376 https://www.encodeproject.org/files/ENCFF742DVI/@@download/ENCFF742DVI.bigBed hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF150BYS bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF812LHP 6089239 ENCODE Processing Pipeline a57b3bdcaa277249137b0364c06f5fe0 https://www.encodeproject.org/files/ENCFF150BYS/@@download/ENCFF150BYS.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF775AMH bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF994LTR 6419949 ENCODE Processing Pipeline 426b4aad5128d4f275f3ab001bb35a13 https://www.encodeproject.org/files/ENCFF775AMH/@@download/ENCFF775AMH.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF639OVD bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF775AMH 13624628 ENCODE Processing Pipeline a137cc4074e26792efe4a515b4fb9fbb https://www.encodeproject.org/files/ENCFF639OVD/@@download/ENCFF639OVD.bigBed hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF153WUK bam unfiltered alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF643CGH 844912358 ENCODE Processing Pipeline 91a77b51ce0cbd2c549adab6429a2bd8 https://www.encodeproject.org/files/ENCFF153WUK/@@download/ENCFF153WUK.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF222VHU bam unfiltered alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF643CGH 1865032750 ENCODE Processing Pipeline 96f6651a0b51acfdfee858d56f3bc2e8 https://www.encodeproject.org/files/ENCFF222VHU/@@download/ENCFF222VHU.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF233KNQ bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF643CGH 638863160 ENCODE Processing Pipeline 1ab5e52241b8b2af7918e6f1f059a7c6 https://www.encodeproject.org/files/ENCFF233KNQ/@@download/ENCFF233KNQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF490SKM bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF643CGH 1311917228 ENCODE Processing Pipeline 0c4946d8815afb610add8a93c401ef58 https://www.encodeproject.org/files/ENCFF490SKM/@@download/ENCFF490SKM.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF170UAC bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF337WHA, ENCFF490SKM, ENCFF610PNU 997984476 ENCODE Processing Pipeline 71c15f4d6dfa20f542132fcd20c45085 https://www.encodeproject.org/files/ENCFF170UAC/@@download/ENCFF170UAC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF972EEX bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF233KNQ, ENCFF337WHA, ENCFF610PNU 800739160 ENCODE Processing Pipeline b234910b06559f6a525294976e2f56d6 https://www.encodeproject.org/files/ENCFF972EEX/@@download/ENCFF972EEX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF453DYR bigWig signal p-value ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF233KNQ, ENCFF337WHA, ENCFF490SKM, ENCFF610PNU 1129410606 ENCODE Processing Pipeline e7aebaefd0e0ceb8de040383d55a793b https://www.encodeproject.org/files/ENCFF453DYR/@@download/ENCFF453DYR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF582KYV bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF337WHA, ENCFF490SKM, ENCFF610PNU 840598980 ENCODE Processing Pipeline 5a28f9622115aca21121432090885bd5 https://www.encodeproject.org/files/ENCFF582KYV/@@download/ENCFF582KYV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF363ACC bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF233KNQ, ENCFF337WHA, ENCFF490SKM, ENCFF610PNU 1104287485 ENCODE Processing Pipeline 69b4ce196076256e9ff90a52c96c6da7 https://www.encodeproject.org/files/ENCFF363ACC/@@download/ENCFF363ACC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF161FYB bigWig fold change over control ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF233KNQ, ENCFF337WHA, ENCFF610PNU 571321956 ENCODE Processing Pipeline 492c2b2b620ec775cdd346079b900303 https://www.encodeproject.org/files/ENCFF161FYB/@@download/ENCFF161FYB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF200LDF bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF233KNQ, ENCFF337WHA, ENCFF610PNU 5931350 ENCODE Processing Pipeline 82196295799dc523fddfac075579d848 https://www.encodeproject.org/files/ENCFF200LDF/@@download/ENCFF200LDF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF243CQL bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF233KNQ, ENCFF337WHA, ENCFF490SKM, ENCFF610PNU 6704003 ENCODE Processing Pipeline 0ef99f66cc7e06f007cf4538ee664f2a https://www.encodeproject.org/files/ENCFF243CQL/@@download/ENCFF243CQL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF467WAZ bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF337WHA, ENCFF490SKM, ENCFF610PNU 6220716 ENCODE Processing Pipeline fa250fd02311b642f94a4802ec6c02f5 https://www.encodeproject.org/files/ENCFF467WAZ/@@download/ENCFF467WAZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF589EYI bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF467WAZ 13622954 ENCODE Processing Pipeline 62f83ab37c0e2ab33ac39ea9f710dfaf https://www.encodeproject.org/files/ENCFF589EYI/@@download/ENCFF589EYI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF239PUQ bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF243CQL 13542565 ENCODE Processing Pipeline 68d08e30cf245d654da91f9621569f1d https://www.encodeproject.org/files/ENCFF239PUQ/@@download/ENCFF239PUQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF904AXV bigBed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF200LDF 13432206 ENCODE Processing Pipeline 056fc9a4b1dcebc0c7764617ffdc03cb https://www.encodeproject.org/files/ENCFF904AXV/@@download/ENCFF904AXV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF606DWB bed narrowPeak conservative idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF200LDF, ENCFF243CQL, ENCFF419RSJ, ENCFF467WAZ 477266 ENCODE Processing Pipeline 2da442df8d816ae60b96864c5e34ab0d https://www.encodeproject.org/files/ENCFF606DWB/@@download/ENCFF606DWB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF119ESN bigBed narrowPeak optimal idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF379TVQ 1012984 ENCODE Processing Pipeline 0dd3d5fed30ea391023a794ae5c22a4f https://www.encodeproject.org/files/ENCFF119ESN/@@download/ENCFF119ESN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF840VZC bigBed narrowPeak conservative idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF606DWB 969721 ENCODE Processing Pipeline a524bf5fe3eb4add2f1093ef765435b9 https://www.encodeproject.org/files/ENCFF840VZC/@@download/ENCFF840VZC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF379TVQ bed narrowPeak optimal idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF200LDF, ENCFF243CQL, ENCFF419RSJ, ENCFF467WAZ 504166 ENCODE Processing Pipeline 84257dd5ce7c1cfe6c380d53b1990ecc https://www.encodeproject.org/files/ENCFF379TVQ/@@download/ENCFF379TVQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF957ONP bigBed narrowPeak conservative idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF014JMW 699386 ENCODE Processing Pipeline f903dde0a38c8e1123be9d7e212b1448 https://www.encodeproject.org/files/ENCFF957ONP/@@download/ENCFF957ONP.bigBed hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF014JMW bed narrowPeak conservative idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF150BYS, ENCFF495GMC, ENCFF775AMH 416270 ENCODE Processing Pipeline 7006249754a96b374c24f4d92145246a https://www.encodeproject.org/files/ENCFF014JMW/@@download/ENCFF014JMW.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF367GXC bigBed narrowPeak optimal idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF133YMX 715335 ENCODE Processing Pipeline 3eaafab53dc5e3b97283da3c2801b2df https://www.encodeproject.org/files/ENCFF367GXC/@@download/ENCFF367GXC.bigBed hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF133YMX bed narrowPeak optimal idr thresholded peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF150BYS, ENCFF495GMC, ENCFF775AMH 428177 ENCODE Processing Pipeline a5fe216065e927a3391b4d54d418aa78 https://www.encodeproject.org/files/ENCFF133YMX/@@download/ENCFF133YMX.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF017GOO fastq reads ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 1 50 single-ended 1880863895 Richard Myers, HAIB 937973a2478ecf704f736a58a46e2929 SRA:SRR5339415 https://www.encodeproject.org/files/ENCFF017GOO/@@download/ENCFF017GOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF654JMO/ released low read depth, antibody characterized with exemption, mixed read lengths ENCFF705KCW fastq reads ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 1 76 single-ended 1412913944 Richard Myers, HAIB bb5d14e7f7bc902fa63da732e80ef357 SRA:SRR5339416 https://www.encodeproject.org/files/ENCFF705KCW/@@download/ENCFF705KCW.fastq.gz Illumina HiSeq 2000 /files/ENCFF074CLV/ released low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths ENCFF717YXY bam unfiltered alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 50 ENCFF643CGH, ENCFF705KCW 1222574092 ENCODE Processing Pipeline 105163b047cecec44a890c600a6f2bbb https://www.encodeproject.org/files/ENCFF717YXY/@@download/ENCFF717YXY.bam GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF878VSW bam unfiltered alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 50 ENCFF705KCW, ENCFF807MUK 1217261647 ENCODE Processing Pipeline be199a5256a69d5b2e805054998fa70b https://www.encodeproject.org/files/ENCFF878VSW/@@download/ENCFF878VSW.bam hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF788STB bam unfiltered alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 50 ENCFF017GOO, ENCFF643CGH 2039800411 ENCODE Processing Pipeline f9c1b075b13b69f9debf7afbb4adf1f4 https://www.encodeproject.org/files/ENCFF788STB/@@download/ENCFF788STB.bam GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF916PKM bam unfiltered alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 50 ENCFF017GOO, ENCFF807MUK 2033567894 ENCODE Processing Pipeline 97e9f824b0715396e9796941b7ec4142 https://www.encodeproject.org/files/ENCFF916PKM/@@download/ENCFF916PKM.bam hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF361SFX bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 50 ENCFF643CGH, ENCFF705KCW 920599975 ENCODE Processing Pipeline 4fb5b999b14415dbbe5865694340a901 https://www.encodeproject.org/files/ENCFF361SFX/@@download/ENCFF361SFX.bam GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF064YNC bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 50 ENCFF705KCW, ENCFF807MUK 920439513 ENCODE Processing Pipeline d34f4563c4aa50fe62e9d74b6007de98 https://www.encodeproject.org/files/ENCFF064YNC/@@download/ENCFF064YNC.bam hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF932FED bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 50 ENCFF017GOO, ENCFF643CGH 1494543350 ENCODE Processing Pipeline 908e915397dfd70c8d68e45e30a8ae7c https://www.encodeproject.org/files/ENCFF932FED/@@download/ENCFF932FED.bam GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF844NZR bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 50 ENCFF017GOO, ENCFF807MUK 1494514489 ENCODE Processing Pipeline 99c74a92287095321046325f94b10b3e https://www.encodeproject.org/files/ENCFF844NZR/@@download/ENCFF844NZR.bam hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF308SQN bigWig fold change over control ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF064YNC, ENCFF449ZKA 515122469 ENCODE Processing Pipeline aa8bc986cc2a4ad61d99b09a7804d7e1 https://www.encodeproject.org/files/ENCFF308SQN/@@download/ENCFF308SQN.bigWig hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF139EUG bigWig signal p-value ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF064YNC, ENCFF449ZKA, ENCFF844NZR, ENCFF929OSU 1120652957 ENCODE Processing Pipeline 274fcd7712c4c382f5970c780020f42c https://www.encodeproject.org/files/ENCFF139EUG/@@download/ENCFF139EUG.bigWig hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF014CZH bigWig fold change over control ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF844NZR, ENCFF929OSU 525925565 ENCODE Processing Pipeline e8011a1372f271b75cc4759e42f2a2cf https://www.encodeproject.org/files/ENCFF014CZH/@@download/ENCFF014CZH.bigWig hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF334WHT bigWig signal p-value ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF844NZR, ENCFF929OSU 643883354 ENCODE Processing Pipeline 76013a9a96db8653dae59a0103cbcb31 https://www.encodeproject.org/files/ENCFF334WHT/@@download/ENCFF334WHT.bigWig hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF268IZJ bigWig signal p-value ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF064YNC, ENCFF449ZKA 661864892 ENCODE Processing Pipeline f9c675c8272625c1d46b34e954b7941f https://www.encodeproject.org/files/ENCFF268IZJ/@@download/ENCFF268IZJ.bigWig hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF629JUA bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF064YNC, ENCFF449ZKA 5765663 ENCODE Processing Pipeline 9915636e438fd998572c529133ee8315 https://www.encodeproject.org/files/ENCFF629JUA/@@download/ENCFF629JUA.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF017AFI bigBed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF629JUA 13385252 ENCODE Processing Pipeline c8a8d665f01bad0523c8d86b0821364b https://www.encodeproject.org/files/ENCFF017AFI/@@download/ENCFF017AFI.bigBed hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF575WAU bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF064YNC, ENCFF449ZKA, ENCFF844NZR, ENCFF929OSU 6860197 ENCODE Processing Pipeline 5e7552b1f0b4005ef912400f6131c491 https://www.encodeproject.org/files/ENCFF575WAU/@@download/ENCFF575WAU.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF438HPL bed narrowPeak conservative idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF001TDO, ENCFF136ODS, ENCFF575WAU, ENCFF629JUA 135865 ENCODE Processing Pipeline 7ad3cc0966bcb0f767b70dc03b6182f2 https://www.encodeproject.org/files/ENCFF438HPL/@@download/ENCFF438HPL.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF494NAX bigWig fold change over control ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF064YNC, ENCFF449ZKA, ENCFF844NZR, ENCFF929OSU 1182364900 ENCODE Processing Pipeline 8adc58b758bff901f77b7511343f23b2 https://www.encodeproject.org/files/ENCFF494NAX/@@download/ENCFF494NAX.bigWig hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF503LYA bigBed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF136ODS 13285893 ENCODE Processing Pipeline 0ab57b932185523bfb90fcb0f0ed2753 https://www.encodeproject.org/files/ENCFF503LYA/@@download/ENCFF503LYA.bigBed hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF136ODS bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF844NZR, ENCFF929OSU 5964046 ENCODE Processing Pipeline be3f58a9c5d39356def9ef240208e6e5 https://www.encodeproject.org/files/ENCFF136ODS/@@download/ENCFF136ODS.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF547GWA bigBed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF575WAU 13390029 ENCODE Processing Pipeline e4fcc549c459ff143d1fe76328e5382b https://www.encodeproject.org/files/ENCFF547GWA/@@download/ENCFF547GWA.bigBed hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF806MVB bigBed narrowPeak conservative idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF438HPL 286481 ENCODE Processing Pipeline 602982d0b21c6a5cdd2ae830e85d5f0d https://www.encodeproject.org/files/ENCFF806MVB/@@download/ENCFF806MVB.bigBed hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF177FZU bed narrowPeak optimal idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF001TDO, ENCFF136ODS, ENCFF575WAU, ENCFF629JUA 201045 ENCODE Processing Pipeline f15f87c10854c7ddee174962575bc02e https://www.encodeproject.org/files/ENCFF177FZU/@@download/ENCFF177FZU.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF434RYB bigBed narrowPeak optimal idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF177FZU 453394 ENCODE Processing Pipeline 2401878d6121007f244545509add6ead https://www.encodeproject.org/files/ENCFF434RYB/@@download/ENCFF434RYB.bigBed hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF577IKJ bigWig signal p-value ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF506QEL, ENCFF932FED 609131345 ENCODE Processing Pipeline ae11f6b47d068caf171fe3a394ffe202 https://www.encodeproject.org/files/ENCFF577IKJ/@@download/ENCFF577IKJ.bigWig GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF344JTR bigWig signal p-value ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF361SFX, ENCFF749JIA 621798237 ENCODE Processing Pipeline 545bb92fdbf1ab97eeeee516328bf45e https://www.encodeproject.org/files/ENCFF344JTR/@@download/ENCFF344JTR.bigWig GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF559PQD bigWig signal p-value ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF361SFX, ENCFF506QEL, ENCFF749JIA, ENCFF932FED 1003094890 ENCODE Processing Pipeline b5239038df14cbee4fb4a83ecdc011a2 https://www.encodeproject.org/files/ENCFF559PQD/@@download/ENCFF559PQD.bigWig GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF970THO bigWig fold change over control ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF506QEL, ENCFF932FED 542781500 ENCODE Processing Pipeline 1e4d2aed2db54e895f5f871293e37497 https://www.encodeproject.org/files/ENCFF970THO/@@download/ENCFF970THO.bigWig GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF499NGO bigWig fold change over control ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF361SFX, ENCFF749JIA 508284437 ENCODE Processing Pipeline 549492ad421b4fd3e37deb67388511af https://www.encodeproject.org/files/ENCFF499NGO/@@download/ENCFF499NGO.bigWig GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF981ISA bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF506QEL, ENCFF932FED 5829680 ENCODE Processing Pipeline 3c32c96b5959c3b0d1f7f13255580ba6 https://www.encodeproject.org/files/ENCFF981ISA/@@download/ENCFF981ISA.bed.gz GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF693WQA bigWig fold change over control ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF361SFX, ENCFF506QEL, ENCFF749JIA, ENCFF932FED 1167616209 ENCODE Processing Pipeline 6b4b15efda30fce88b7598aa018cc738 https://www.encodeproject.org/files/ENCFF693WQA/@@download/ENCFF693WQA.bigWig GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF466XFJ bigBed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF528FFE 11177297 ENCODE Processing Pipeline f7a17ee4acf5ce729c313d7787509e96 https://www.encodeproject.org/files/ENCFF466XFJ/@@download/ENCFF466XFJ.bigBed GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF530OOZ bigBed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF981ISA 13291368 ENCODE Processing Pipeline 52f9b553df63f800fa15601b814a7341 https://www.encodeproject.org/files/ENCFF530OOZ/@@download/ENCFF530OOZ.bigBed GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF059HCN bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF361SFX, ENCFF506QEL, ENCFF749JIA, ENCFF932FED 6748326 ENCODE Processing Pipeline e14fa671126c6fe3bb0bb4e8600b9ee4 https://www.encodeproject.org/files/ENCFF059HCN/@@download/ENCFF059HCN.bed.gz GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF528FFE bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF361SFX, ENCFF749JIA 5502252 ENCODE Processing Pipeline 66a758dc22c375a710fa58a37df2b8b2 https://www.encodeproject.org/files/ENCFF528FFE/@@download/ENCFF528FFE.bed.gz GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF490ZAJ bed narrowPeak conservative idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF059HCN, ENCFF419RSJ, ENCFF528FFE, ENCFF981ISA 136440 ENCODE Processing Pipeline 723352af6ab28372a36037072a4e08d2 https://www.encodeproject.org/files/ENCFF490ZAJ/@@download/ENCFF490ZAJ.bed.gz GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF655WEI bigBed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF059HCN 13390504 ENCODE Processing Pipeline 6d9914e14b68af415ac3a52dc1a3437f https://www.encodeproject.org/files/ENCFF655WEI/@@download/ENCFF655WEI.bigBed GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF415SHK bigBed narrowPeak conservative idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF490ZAJ 286688 ENCODE Processing Pipeline 682d8e7e743ce8a11e6e506daa9a28ae https://www.encodeproject.org/files/ENCFF415SHK/@@download/ENCFF415SHK.bigBed GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF769SEZ bed narrowPeak optimal idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF059HCN, ENCFF419RSJ, ENCFF528FFE, ENCFF981ISA 197486 ENCODE Processing Pipeline 76af9fc9f3e2f05be2ccaa5723105d87 https://www.encodeproject.org/files/ENCFF769SEZ/@@download/ENCFF769SEZ.bed.gz GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF504NTG bigBed narrowPeak optimal idr thresholded peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF769SEZ 448907 ENCODE Processing Pipeline 76116ee9389233a1b6520458fdae7c77 https://www.encodeproject.org/files/ENCFF504NTG/@@download/ENCFF504NTG.bigBed GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF472ZHR bam unfiltered alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF045UOH, ENCFF807MUK 1033443598 ENCODE Processing Pipeline e13ff3936b912fa893051f78f82e7db2 https://www.encodeproject.org/files/ENCFF472ZHR/@@download/ENCFF472ZHR.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF105SMK bam unfiltered alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF468UEL, ENCFF807MUK 1268639489 ENCODE Processing Pipeline 620d67e22a6a26ec2a5f481df0bb84ad https://www.encodeproject.org/files/ENCFF105SMK/@@download/ENCFF105SMK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF468UEL fastq reads ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1394707718 Richard Myers, HAIB b98e0957aa5d8632ec98f8158fa98d29 SRA:SRR5339409 https://www.encodeproject.org/files/ENCFF468UEL/@@download/ENCFF468UEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF434XRU/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF045UOH fastq reads ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1115105921 Richard Myers, HAIB bc0ab97f2f57bfa0d1c53c27f5ed197e SRA:SRR5339410 https://www.encodeproject.org/files/ENCFF045UOH/@@download/ENCFF045UOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF272WBE/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF674SQJ bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF468UEL, ENCFF807MUK 649226320 ENCODE Processing Pipeline 123df4d7e0558e7f2d9824942f2f1502 https://www.encodeproject.org/files/ENCFF674SQJ/@@download/ENCFF674SQJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF213IBE bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF045UOH, ENCFF807MUK 538128588 ENCODE Processing Pipeline 036ac58c74ee9f547f227cccbd542ac0 https://www.encodeproject.org/files/ENCFF213IBE/@@download/ENCFF213IBE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF126URE bigWig signal p-value ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF213IBE, ENCFF850ZDJ 649818158 ENCODE Processing Pipeline 8f1c9773011e237f79ee87acbc7af321 https://www.encodeproject.org/files/ENCFF126URE/@@download/ENCFF126URE.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF911GYT bigWig signal p-value ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF108FPL, ENCFF213IBE, ENCFF674SQJ, ENCFF850ZDJ 712582909 ENCODE Processing Pipeline e9e63653586e7daf5a0af9fda65934f4 https://www.encodeproject.org/files/ENCFF911GYT/@@download/ENCFF911GYT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF583CBK bigWig signal p-value ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF674SQJ, ENCFF850ZDJ 738745147 ENCODE Processing Pipeline c827d38eb763809f2e94e0fbde242fbc https://www.encodeproject.org/files/ENCFF583CBK/@@download/ENCFF583CBK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF696LNC bigWig fold change over control ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF213IBE, ENCFF850ZDJ 391867381 ENCODE Processing Pipeline f90627e4650a4beb72048c0b9b69b3c1 https://www.encodeproject.org/files/ENCFF696LNC/@@download/ENCFF696LNC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF636FTJ bigWig fold change over control ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF674SQJ, ENCFF850ZDJ 579982963 ENCODE Processing Pipeline 072d6ad064a62463f318fd52f551d2a7 https://www.encodeproject.org/files/ENCFF636FTJ/@@download/ENCFF636FTJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF168SMR bigWig fold change over control ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF108FPL, ENCFF213IBE, ENCFF674SQJ, ENCFF850ZDJ 777977058 ENCODE Processing Pipeline 432b37aafb572794f68a5fc67a0f03f5 https://www.encodeproject.org/files/ENCFF168SMR/@@download/ENCFF168SMR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF436LYU bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF213IBE, ENCFF850ZDJ 5709650 ENCODE Processing Pipeline 6b343ead7d115e6b752ee6c132f97a7f https://www.encodeproject.org/files/ENCFF436LYU/@@download/ENCFF436LYU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF533OLJ bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF674SQJ, ENCFF850ZDJ 6215046 ENCODE Processing Pipeline 68dc3be13a3520b559f5ef82686f09cd https://www.encodeproject.org/files/ENCFF533OLJ/@@download/ENCFF533OLJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF062EYR bigBed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF436LYU 13302123 ENCODE Processing Pipeline ac07c57e48ccb3deb2557d41f75d7001 https://www.encodeproject.org/files/ENCFF062EYR/@@download/ENCFF062EYR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF328VME bigBed narrowPeak conservative idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF920ITW 480070 ENCODE Processing Pipeline f963b424d4c54cc0e15b1069737d1375 https://www.encodeproject.org/files/ENCFF328VME/@@download/ENCFF328VME.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF003GNY bed narrowPeak optimal idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF436LYU, ENCFF518DDL, ENCFF533OLJ 280925 ENCODE Processing Pipeline c43e409d329170937ef998c5d5e77be0 https://www.encodeproject.org/files/ENCFF003GNY/@@download/ENCFF003GNY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF999BAC bigBed narrowPeak optimal idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF003GNY 520461 ENCODE Processing Pipeline 3018b3d7d4e6cd9bd5b5b7b1c7b61c3a https://www.encodeproject.org/files/ENCFF999BAC/@@download/ENCFF999BAC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF920ITW bed narrowPeak conservative idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF436LYU, ENCFF518DDL, ENCFF533OLJ 253190 ENCODE Processing Pipeline 59925803583637c7f4a1a2696f1d99d4 https://www.encodeproject.org/files/ENCFF920ITW/@@download/ENCFF920ITW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF518DDL bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF108FPL, ENCFF213IBE, ENCFF674SQJ, ENCFF850ZDJ 6541063 ENCODE Processing Pipeline a8c2d05179a659f50c6e8e735e491216 https://www.encodeproject.org/files/ENCFF518DDL/@@download/ENCFF518DDL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF836CKV bigBed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF518DDL 13438336 ENCODE Processing Pipeline 5ed85e2af91a0d683ab9e1eef61da61d https://www.encodeproject.org/files/ENCFF836CKV/@@download/ENCFF836CKV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF655LXK bigBed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF533OLJ 13395517 ENCODE Processing Pipeline adb8e438adce819c4e09a6c181404cbb https://www.encodeproject.org/files/ENCFF655LXK/@@download/ENCFF655LXK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF390ZCZ bam unfiltered alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF468UEL, ENCFF643CGH 1272463486 ENCODE Processing Pipeline e7c9b1d0b2918ecda5d55e40ae4a3e12 https://www.encodeproject.org/files/ENCFF390ZCZ/@@download/ENCFF390ZCZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF131CXQ bam unfiltered alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF045UOH, ENCFF643CGH 1035185785 ENCODE Processing Pipeline 1db41953f83b96b044bc3aa7495a2481 https://www.encodeproject.org/files/ENCFF131CXQ/@@download/ENCFF131CXQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF688NWX bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF045UOH, ENCFF643CGH 537930120 ENCODE Processing Pipeline 13ab622384a140201e43f51e6e292b50 https://www.encodeproject.org/files/ENCFF688NWX/@@download/ENCFF688NWX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF332KBI bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF468UEL, ENCFF643CGH 649009623 ENCODE Processing Pipeline 70c766fbaad3d0bb653300a673b7e2d3 https://www.encodeproject.org/files/ENCFF332KBI/@@download/ENCFF332KBI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF387INZ bigWig signal p-value ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF035HOG, ENCFF626VZO, ENCFF688NWX 714520850 ENCODE Processing Pipeline 0d1bce2355cb1a5418fecea4c341c3e4 https://www.encodeproject.org/files/ENCFF387INZ/@@download/ENCFF387INZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF295FJW bigWig signal p-value ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF035HOG, ENCFF332KBI, ENCFF626VZO 720122733 ENCODE Processing Pipeline 0d8df6230b7ab6bc057cf55ad3c35826 https://www.encodeproject.org/files/ENCFF295FJW/@@download/ENCFF295FJW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF501JJR bigWig fold change over control ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF035HOG, ENCFF626VZO, ENCFF688NWX 382726704 ENCODE Processing Pipeline fc71f71830a44b849bf037cb9f7f9ad4 https://www.encodeproject.org/files/ENCFF501JJR/@@download/ENCFF501JJR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF686OMQ bigWig signal p-value ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF035HOG, ENCFF332KBI, ENCFF626VZO, ENCFF688NWX 777697775 ENCODE Processing Pipeline ff4d64346dc575975d9dd19f78562c32 https://www.encodeproject.org/files/ENCFF686OMQ/@@download/ENCFF686OMQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF382WBN bigWig fold change over control ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF035HOG, ENCFF332KBI, ENCFF626VZO, ENCFF688NWX 776981660 ENCODE Processing Pipeline 71cc8ace24b709f744c7f32ce15a91e9 https://www.encodeproject.org/files/ENCFF382WBN/@@download/ENCFF382WBN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF570RVS bigWig fold change over control ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF035HOG, ENCFF332KBI, ENCFF626VZO 576992104 ENCODE Processing Pipeline 41fe5ca3a4ff80f985eaa42d8007aa2a https://www.encodeproject.org/files/ENCFF570RVS/@@download/ENCFF570RVS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF665ZMZ bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF035HOG, ENCFF626VZO, ENCFF688NWX 5508431 ENCODE Processing Pipeline 3c355f4aaf6175ed9f003d130a1e5d20 https://www.encodeproject.org/files/ENCFF665ZMZ/@@download/ENCFF665ZMZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF833JKW bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF035HOG, ENCFF332KBI, ENCFF626VZO 6000066 ENCODE Processing Pipeline 56101f48ecc8105b53f0362176b94c93 https://www.encodeproject.org/files/ENCFF833JKW/@@download/ENCFF833JKW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF930MLB bigBed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF665ZMZ 13234981 ENCODE Processing Pipeline c029b4f4f16390a11499a6e4163f91c8 https://www.encodeproject.org/files/ENCFF930MLB/@@download/ENCFF930MLB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF531ASI bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF035HOG, ENCFF332KBI, ENCFF626VZO, ENCFF688NWX 6369740 ENCODE Processing Pipeline e96f6b6a6352a435ddbd6e3721998111 https://www.encodeproject.org/files/ENCFF531ASI/@@download/ENCFF531ASI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF842MAP bigBed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF833JKW 13364845 ENCODE Processing Pipeline 1f95a4430df82c1948f65ee292672f21 https://www.encodeproject.org/files/ENCFF842MAP/@@download/ENCFF842MAP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF536CTX bed narrowPeak conservative idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF531ASI, ENCFF665ZMZ, ENCFF833JKW 260809 ENCODE Processing Pipeline 06707cba16ae5fdbd0b28d177f3e3f2b https://www.encodeproject.org/files/ENCFF536CTX/@@download/ENCFF536CTX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF418HPM bigBed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF531ASI 13467290 ENCODE Processing Pipeline 88ed03aa222a5a302d93440a299a0d49 https://www.encodeproject.org/files/ENCFF418HPM/@@download/ENCFF418HPM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF313RFR bed narrowPeak optimal idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF531ASI, ENCFF665ZMZ, ENCFF833JKW 294539 ENCODE Processing Pipeline a850261710eb5c1d26bf933271e7be75 https://www.encodeproject.org/files/ENCFF313RFR/@@download/ENCFF313RFR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF095QFS bigBed narrowPeak conservative idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF536CTX 623629 ENCODE Processing Pipeline cfaed51d61e56a5b892a8d2aa07f256e https://www.encodeproject.org/files/ENCFF095QFS/@@download/ENCFF095QFS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF863FRP bigBed narrowPeak optimal idr thresholded peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF313RFR 688100 ENCODE Processing Pipeline e51f2eb1b982776df60d7022c1dccb74 https://www.encodeproject.org/files/ENCFF863FRP/@@download/ENCFF863FRP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF287ADI fastq reads ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1623083597 Richard Myers, HAIB da1a36b807c378069625527e30cbec39 SRA:SRR5338714 https://www.encodeproject.org/files/ENCFF287ADI/@@download/ENCFF287ADI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521IXY fastq reads ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2024292514 Richard Myers, HAIB ab30f08ab18cd683df667230c9a03159 SRA:SRR5338713 https://www.encodeproject.org/files/ENCFF521IXY/@@download/ENCFF521IXY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF250ZEU bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 76 ENCFF521IXY, ENCFF643CGH 1915484676 ENCODE Processing Pipeline b7ae9f6d4848a17cc9728681878dd7f5 https://www.encodeproject.org/files/ENCFF250ZEU/@@download/ENCFF250ZEU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF180NFM bam unfiltered alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 76 ENCFF287ADI, ENCFF807MUK 1867231258 ENCODE Processing Pipeline 5c629e6d892ee9efe949dc092d6cd4ac https://www.encodeproject.org/files/ENCFF180NFM/@@download/ENCFF180NFM.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF965CQC bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 76 ENCFF287ADI, ENCFF807MUK 1258641520 ENCODE Processing Pipeline ad55a500374dd28d5387e42e1db65d39 https://www.encodeproject.org/files/ENCFF965CQC/@@download/ENCFF965CQC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF553BFP bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 76 ENCFF521IXY, ENCFF807MUK 1914057501 ENCODE Processing Pipeline 4304c9fcb1ef9bbf50ca82d01eafd212 https://www.encodeproject.org/files/ENCFF553BFP/@@download/ENCFF553BFP.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF634VRX bam unfiltered alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 76 ENCFF521IXY, ENCFF643CGH 2447069942 ENCODE Processing Pipeline dc222d25933ad9144ae3045a176a8b04 https://www.encodeproject.org/files/ENCFF634VRX/@@download/ENCFF634VRX.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF741KLN bam unfiltered alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 76 ENCFF287ADI, ENCFF643CGH 1869301577 ENCODE Processing Pipeline d3d0f9a2c10d4142ef880be166c85a25 https://www.encodeproject.org/files/ENCFF741KLN/@@download/ENCFF741KLN.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF407PYO bam unfiltered alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 76 ENCFF521IXY, ENCFF807MUK 2440178875 ENCODE Processing Pipeline 64d2b1fdb3e8b6f5710a2e32bba68a49 https://www.encodeproject.org/files/ENCFF407PYO/@@download/ENCFF407PYO.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF789XWO bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 76 ENCFF287ADI, ENCFF643CGH 1258849045 ENCODE Processing Pipeline ee209c30b70729344d0ae9eab4d775f1 https://www.encodeproject.org/files/ENCFF789XWO/@@download/ENCFF789XWO.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402JDY bigWig fold change over control ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF789XWO 428584723 ENCODE Processing Pipeline 22d7e8e0bdd289dda2912aee6cdd7e9f https://www.encodeproject.org/files/ENCFF402JDY/@@download/ENCFF402JDY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF256ZWF bigWig signal p-value ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF250ZEU 659156935 ENCODE Processing Pipeline 4068c4f970662d20c8503b8052533666 https://www.encodeproject.org/files/ENCFF256ZWF/@@download/ENCFF256ZWF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF083RHA bigWig signal p-value ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF789XWO 570340923 ENCODE Processing Pipeline 8af9349a3e2887381bd8e89788d4375e https://www.encodeproject.org/files/ENCFF083RHA/@@download/ENCFF083RHA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF982AAL bigWig signal p-value ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF250ZEU, ENCFF789XWO 678683820 ENCODE Processing Pipeline 20852d8d729f7d0d174e5edeae99291e https://www.encodeproject.org/files/ENCFF982AAL/@@download/ENCFF982AAL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF042CIY bigWig fold change over control ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF250ZEU 626239977 ENCODE Processing Pipeline 79af090c0910d1fe41ff51ac812f8481 https://www.encodeproject.org/files/ENCFF042CIY/@@download/ENCFF042CIY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF605TCK bigWig fold change over control ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF250ZEU, ENCFF789XWO 911285692 ENCODE Processing Pipeline 5ef0e98d0049827acbcef48ca8c4a37f https://www.encodeproject.org/files/ENCFF605TCK/@@download/ENCFF605TCK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF309FZW bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF250ZEU 6283604 ENCODE Processing Pipeline d067c43b3d0ff35854c89d2488ecd613 https://www.encodeproject.org/files/ENCFF309FZW/@@download/ENCFF309FZW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF225MMJ bigBed narrowPeak optimal idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF179NMB 1309812 ENCODE Processing Pipeline fd8b17eebbcf1fc6d0f0e9a6cdb7c97e https://www.encodeproject.org/files/ENCFF225MMJ/@@download/ENCFF225MMJ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF208JRS bigBed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF453PGL 12510397 ENCODE Processing Pipeline 997134a5d9190999dce05f4a17d5e8d4 https://www.encodeproject.org/files/ENCFF208JRS/@@download/ENCFF208JRS.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF400XLI bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF789XWO 6852475 ENCODE Processing Pipeline 027ba973a64100bcea6fd67a6650f22d https://www.encodeproject.org/files/ENCFF400XLI/@@download/ENCFF400XLI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF622EUH bed narrowPeak conservative idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF309FZW, ENCFF400XLI, ENCFF419RSJ, ENCFF453PGL 375363 ENCODE Processing Pipeline 359f738179f2bbae32fd86ad8913d0ad https://www.encodeproject.org/files/ENCFF622EUH/@@download/ENCFF622EUH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF623WIB bigBed narrowPeak conservative idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF622EUH 748191 ENCODE Processing Pipeline c1a18c42d702e8c276012954104a69da https://www.encodeproject.org/files/ENCFF623WIB/@@download/ENCFF623WIB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF179NMB bed narrowPeak optimal idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF309FZW, ENCFF400XLI, ENCFF419RSJ, ENCFF453PGL 598746 ENCODE Processing Pipeline 1c358b4723933cd381e9fe37752281fb https://www.encodeproject.org/files/ENCFF179NMB/@@download/ENCFF179NMB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF954NFO bigBed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF309FZW 13078476 ENCODE Processing Pipeline 9f0109f538cf71ae9a18ae4a7310eafb https://www.encodeproject.org/files/ENCFF954NFO/@@download/ENCFF954NFO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF538NYP bigBed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF400XLI 12266883 ENCODE Processing Pipeline 590eb6600e3b1edee3600d5ac2245eb4 https://www.encodeproject.org/files/ENCFF538NYP/@@download/ENCFF538NYP.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF453PGL bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF250ZEU, ENCFF789XWO 7128048 ENCODE Processing Pipeline 99ea8699938f343c31fd3ba0799370cc https://www.encodeproject.org/files/ENCFF453PGL/@@download/ENCFF453PGL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF813KLS bigWig signal p-value ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF553BFP 1403361373 ENCODE Processing Pipeline 69d93a2c80c224e3f783cea025037d29 https://www.encodeproject.org/files/ENCFF813KLS/@@download/ENCFF813KLS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF116BFX bigWig signal p-value ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF965CQC 1252146534 ENCODE Processing Pipeline d868c2a357ee2393b72c284794f7a52b https://www.encodeproject.org/files/ENCFF116BFX/@@download/ENCFF116BFX.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF646ZYB bigWig signal p-value ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF553BFP, ENCFF965CQC 1578769278 ENCODE Processing Pipeline 87543f096b7060739779d3c4ccbcbd63 https://www.encodeproject.org/files/ENCFF646ZYB/@@download/ENCFF646ZYB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF265LHH bigWig fold change over control ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF553BFP 1060720225 ENCODE Processing Pipeline 7290493e9aec43c23985abbd408197d5 https://www.encodeproject.org/files/ENCFF265LHH/@@download/ENCFF265LHH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF516UEC bigWig fold change over control ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF965CQC 787862544 ENCODE Processing Pipeline 644409af8b21065f95543d06e85efc61 https://www.encodeproject.org/files/ENCFF516UEC/@@download/ENCFF516UEC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF674SCB bigWig fold change over control ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF553BFP, ENCFF965CQC 1471047731 ENCODE Processing Pipeline a65b2993744944e94aa3e6d6e71f7606 https://www.encodeproject.org/files/ENCFF674SCB/@@download/ENCFF674SCB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530ZYM bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF553BFP 6933467 ENCODE Processing Pipeline 1a22c0fdb31099eea0a157fc240e41d7 https://www.encodeproject.org/files/ENCFF530ZYM/@@download/ENCFF530ZYM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF525HIO bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF553BFP, ENCFF965CQC 7040250 ENCODE Processing Pipeline 435c6e1e79cb60c5420073935b1b6d37 https://www.encodeproject.org/files/ENCFF525HIO/@@download/ENCFF525HIO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF060WBX bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF965CQC 6831676 ENCODE Processing Pipeline c5d01810802b20670d1f08bb2293814c https://www.encodeproject.org/files/ENCFF060WBX/@@download/ENCFF060WBX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF692BGW bigBed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF530ZYM 13045482 ENCODE Processing Pipeline f5554a9241ffb07933f0e0b3d3447d68 https://www.encodeproject.org/files/ENCFF692BGW/@@download/ENCFF692BGW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF307HMF bigBed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF060WBX 12003612 ENCODE Processing Pipeline 792466db3c92984432f0aa6081e27173 https://www.encodeproject.org/files/ENCFF307HMF/@@download/ENCFF307HMF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531ERR bigBed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF525HIO 12363651 ENCODE Processing Pipeline deabcc63f7d5a009891c238febd74bb4 https://www.encodeproject.org/files/ENCFF531ERR/@@download/ENCFF531ERR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617JJO bed narrowPeak conservative idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF060WBX, ENCFF525HIO, ENCFF530ZYM 416910 ENCODE Processing Pipeline a0b209ba69bd81bc55103d537a34fad3 https://www.encodeproject.org/files/ENCFF617JJO/@@download/ENCFF617JJO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF916OSQ bed narrowPeak optimal idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF060WBX, ENCFF525HIO, ENCFF530ZYM 611201 ENCODE Processing Pipeline 11f0622c11f0e5b0170cab9af65aeabf https://www.encodeproject.org/files/ENCFF916OSQ/@@download/ENCFF916OSQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099ITO bigBed narrowPeak conservative idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF617JJO 830270 ENCODE Processing Pipeline 0c6eef58943980935dbe6b636c561055 https://www.encodeproject.org/files/ENCFF099ITO/@@download/ENCFF099ITO.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF723CKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF916OSQ 1398808 ENCODE Processing Pipeline 0e430980d1d7c2a8689814594ef50ed5 https://www.encodeproject.org/files/ENCFF723CKJ/@@download/ENCFF723CKJ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF514ZDJ fastq reads ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF249PNP 2421911616 Michael Snyder, Stanford 9105c8ec245a2214b98d36cd91eff470 SRA:SRR6213558 https://www.encodeproject.org/files/ENCFF514ZDJ/@@download/ENCFF514ZDJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity ENCFF756SRO fastq reads ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF615SHE 2815009659 Michael Snyder, Stanford b6e39f5fb86e540c46f6af1ef456d313 SRA:SRR6213557 https://www.encodeproject.org/files/ENCFF756SRO/@@download/ENCFF756SRO.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity ENCFF615SHE fastq reads ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF756SRO 3393189355 Michael Snyder, Stanford 3cea6c67beea76dd501085e1d9031470 SRA:SRR6213557 https://www.encodeproject.org/files/ENCFF615SHE/@@download/ENCFF615SHE.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity ENCFF249PNP fastq reads ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF514ZDJ 2888058502 Michael Snyder, Stanford e205516a94f2068d8f916585048ba5dd SRA:SRR6213558 https://www.encodeproject.org/files/ENCFF249PNP/@@download/ENCFF249PNP.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity ENCFF398EEB bam unfiltered alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF249PNP, ENCFF514ZDJ, ENCFF643CGH 4808480790 ENCODE Processing Pipeline 66ddbee0ae07cc118244e6a9ad047774 https://www.encodeproject.org/files/ENCFF398EEB/@@download/ENCFF398EEB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF141ICN bam unfiltered alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF249PNP, ENCFF514ZDJ, ENCFF807MUK 4806165138 ENCODE Processing Pipeline 1de542ac41188a3a90bc00ef01ebf8e2 https://www.encodeproject.org/files/ENCFF141ICN/@@download/ENCFF141ICN.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF475KIY bam unfiltered alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF615SHE, ENCFF756SRO, ENCFF807MUK 5519125696 ENCODE Processing Pipeline 72660f302a47817515b103d72d7b9f7c https://www.encodeproject.org/files/ENCFF475KIY/@@download/ENCFF475KIY.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF960KBQ bam unfiltered alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF615SHE, ENCFF643CGH, ENCFF756SRO 5521482102 ENCODE Processing Pipeline cd612a5a99ae05423256809460defe88 https://www.encodeproject.org/files/ENCFF960KBQ/@@download/ENCFF960KBQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF318HXV bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF615SHE, ENCFF756SRO, ENCFF807MUK 3531474467 ENCODE Processing Pipeline 7790ae4437df262ae6ade9e76d2d5395 https://www.encodeproject.org/files/ENCFF318HXV/@@download/ENCFF318HXV.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF803TYM bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF249PNP, ENCFF514ZDJ, ENCFF643CGH 3236115782 ENCODE Processing Pipeline 2588f1603f43277f7ae16b1471fbff3d https://www.encodeproject.org/files/ENCFF803TYM/@@download/ENCFF803TYM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF899ORC bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF249PNP, ENCFF514ZDJ, ENCFF807MUK 3234128108 ENCODE Processing Pipeline b4353341d5840348fb38fdfa595dc17e https://www.encodeproject.org/files/ENCFF899ORC/@@download/ENCFF899ORC.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF698VVG bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF615SHE, ENCFF643CGH, ENCFF756SRO 3533870594 ENCODE Processing Pipeline 63f416f989a93e24f359aca7577a4f5e https://www.encodeproject.org/files/ENCFF698VVG/@@download/ENCFF698VVG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF761NRP bigWig signal p-value ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF899ORC 982376119 ENCODE Processing Pipeline ebaef32537b86c19186a02081917d780 https://www.encodeproject.org/files/ENCFF761NRP/@@download/ENCFF761NRP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF260JMM bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF318HXV, ENCFF834TUP 7100744 ENCODE Processing Pipeline 088d643e4c1e293ba708b5d62b327189 https://www.encodeproject.org/files/ENCFF260JMM/@@download/ENCFF260JMM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF431KXB bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF318HXV, ENCFF834TUP, ENCFF899ORC 7285470 ENCODE Processing Pipeline 45bdf9d882d751aef8b239239586d983 https://www.encodeproject.org/files/ENCFF431KXB/@@download/ENCFF431KXB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF673IPX bigBed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF260JMM 12810944 ENCODE Processing Pipeline a6602f9849463e3e9bf00f13396d5095 https://www.encodeproject.org/files/ENCFF673IPX/@@download/ENCFF673IPX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF485QVW bigBed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF191KTX 13209165 ENCODE Processing Pipeline 7819de6ef71923fdba04ed7ddc41224c https://www.encodeproject.org/files/ENCFF485QVW/@@download/ENCFF485QVW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF817VGB bigBed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF431KXB 12958147 ENCODE Processing Pipeline 989582059dc97b69dcad01b02309e23c https://www.encodeproject.org/files/ENCFF817VGB/@@download/ENCFF817VGB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF401QYL bigBed narrowPeak optimal idr thresholded peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF059ONJ 1475536 ENCODE Processing Pipeline 763efdc1175a7edaab97ff2ae57e08cf https://www.encodeproject.org/files/ENCFF401QYL/@@download/ENCFF401QYL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF146HYH bigWig signal p-value ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF318HXV, ENCFF834TUP 1011588117 ENCODE Processing Pipeline 342a590559f47048eeb78b9843e62b96 https://www.encodeproject.org/files/ENCFF146HYH/@@download/ENCFF146HYH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF503JZG bigWig signal p-value ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF318HXV, ENCFF834TUP, ENCFF899ORC 1836197092 ENCODE Processing Pipeline 94c6c0578f50c3bcfaf5d55b26c1a864 https://www.encodeproject.org/files/ENCFF503JZG/@@download/ENCFF503JZG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF318WPO bigWig fold change over control ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF899ORC 1224297782 ENCODE Processing Pipeline 525712702acf72483119ce3738b30d41 https://www.encodeproject.org/files/ENCFF318WPO/@@download/ENCFF318WPO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF122KIF bigWig fold change over control ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF318HXV, ENCFF834TUP 1310401311 ENCODE Processing Pipeline 71408832c760f8ad09648e53422ba101 https://www.encodeproject.org/files/ENCFF122KIF/@@download/ENCFF122KIF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF191KTX bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF899ORC 6850176 ENCODE Processing Pipeline d6d781cc28f8d5798a2b30c9215d71be https://www.encodeproject.org/files/ENCFF191KTX/@@download/ENCFF191KTX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF638KYE bigWig fold change over control ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF318HXV, ENCFF834TUP, ENCFF899ORC 2171017618 ENCODE Processing Pipeline 709bfd30d259099ee8633455e9f79cb3 https://www.encodeproject.org/files/ENCFF638KYE/@@download/ENCFF638KYE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF059ONJ bed narrowPeak optimal idr thresholded peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF191KTX, ENCFF260JMM, ENCFF431KXB 698405 ENCODE Processing Pipeline b90c66a28237946beae947f6c6d02cdd https://www.encodeproject.org/files/ENCFF059ONJ/@@download/ENCFF059ONJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF832QZZ bigWig signal p-value ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF790TAN, ENCFF803TYM 1095230421 ENCODE Processing Pipeline 77968df2e78a193a6aeecffb1e77bef2 https://www.encodeproject.org/files/ENCFF832QZZ/@@download/ENCFF832QZZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF720WDL bigWig signal p-value ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF698VVG, ENCFF712WXB 1029595324 ENCODE Processing Pipeline bbb32c7519f081a7c290bec6d79d4394 https://www.encodeproject.org/files/ENCFF720WDL/@@download/ENCFF720WDL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF885QLV bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF698VVG, ENCFF712WXB 7159991 ENCODE Processing Pipeline 83a3d7a31df632d5bf2ccb1b30e56313 https://www.encodeproject.org/files/ENCFF885QLV/@@download/ENCFF885QLV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF553CUJ bigWig fold change over control ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF790TAN, ENCFF803TYM 1226300942 ENCODE Processing Pipeline 0b4f491bd20ed843639d5655168fd4a8 https://www.encodeproject.org/files/ENCFF553CUJ/@@download/ENCFF553CUJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF135BHH bigWig fold change over control ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF698VVG, ENCFF712WXB 1301421735 ENCODE Processing Pipeline 01aa0934b51bfd98c22b84865bbcf5c0 https://www.encodeproject.org/files/ENCFF135BHH/@@download/ENCFF135BHH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF896XFU bigWig signal p-value ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF698VVG, ENCFF712WXB, ENCFF790TAN, ENCFF803TYM 1822160833 ENCODE Processing Pipeline 712ac551e1ffb9ea95a40e3608301d48 https://www.encodeproject.org/files/ENCFF896XFU/@@download/ENCFF896XFU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF666QUF bigBed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF885QLV 12892567 ENCODE Processing Pipeline fd0f1e79cbd40364d103c7b437a6f3fe https://www.encodeproject.org/files/ENCFF666QUF/@@download/ENCFF666QUF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF131DAH bigBed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF415QOB 12955918 ENCODE Processing Pipeline f5e625b055174fe075400b0edeaa8fdf https://www.encodeproject.org/files/ENCFF131DAH/@@download/ENCFF131DAH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF307NZC bigWig fold change over control ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF698VVG, ENCFF712WXB, ENCFF790TAN, ENCFF803TYM 2163771895 ENCODE Processing Pipeline 7d1eb0eec9281cab209ec3ab08d7279e https://www.encodeproject.org/files/ENCFF307NZC/@@download/ENCFF307NZC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF682WFJ bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF790TAN, ENCFF803TYM 6857662 ENCODE Processing Pipeline 45cced03fe00f90cfc53814c79c64799 https://www.encodeproject.org/files/ENCFF682WFJ/@@download/ENCFF682WFJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF779KIK bigBed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF682WFJ 13227024 ENCODE Processing Pipeline bb003ad3b11229ba9ef34c3cfd703f30 https://www.encodeproject.org/files/ENCFF779KIK/@@download/ENCFF779KIK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF415QOB bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF698VVG, ENCFF712WXB, ENCFF790TAN, ENCFF803TYM 7278240 ENCODE Processing Pipeline 963f05c1b890c4068741c4b4bb694c2e https://www.encodeproject.org/files/ENCFF415QOB/@@download/ENCFF415QOB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF926CRV bed narrowPeak optimal idr thresholded peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF415QOB, ENCFF419RSJ, ENCFF682WFJ, ENCFF885QLV 697021 ENCODE Processing Pipeline 42dc879ba07ade844e614f635def9031 https://www.encodeproject.org/files/ENCFF926CRV/@@download/ENCFF926CRV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF631EJP bigBed narrowPeak optimal idr thresholded peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF926CRV 1475076 ENCODE Processing Pipeline b603c5f8c934f2d9eb0662763f0784c7 https://www.encodeproject.org/files/ENCFF631EJP/@@download/ENCFF631EJP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF318EMZ bam unfiltered alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085NFE, ENCFF214JGI, ENCFF807MUK 4994444050 ENCODE Processing Pipeline b00e338861f69278f4bd802f10d8efeb https://www.encodeproject.org/files/ENCFF318EMZ/@@download/ENCFF318EMZ.bam hg19 released ENCFF241DMZ bam unfiltered alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF099ZTK, ENCFF684TOL, ENCFF807MUK 5197376005 ENCODE Processing Pipeline 95e0851b0e858b82ccf57a69e3875cd8 https://www.encodeproject.org/files/ENCFF241DMZ/@@download/ENCFF241DMZ.bam hg19 released ENCFF684TOL fastq reads ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF099ZTK 2331559074 Michael Snyder, Stanford cc1d8df4b4dffa4b31437ab5e3311155 SRA:SRR5111789 https://www.encodeproject.org/files/ENCFF684TOL/@@download/ENCFF684TOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF085NFE fastq reads ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF214JGI 2230863430 Michael Snyder, Stanford 29e392b02335001f9ea3fac88b2f4c30 SRA:SRR5111788 https://www.encodeproject.org/files/ENCFF085NFE/@@download/ENCFF085NFE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF099ZTK fastq reads ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF684TOL 2380653135 Michael Snyder, Stanford a937b8d0f5c2e151d277f7b26368f4d9 SRA:SRR5111789 https://www.encodeproject.org/files/ENCFF099ZTK/@@download/ENCFF099ZTK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF214JGI fastq reads ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF085NFE 2279197428 Michael Snyder, Stanford 56789eced071bda865b84488bea9ffc9 SRA:SRR5111788 https://www.encodeproject.org/files/ENCFF214JGI/@@download/ENCFF214JGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF288XHQ bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF099ZTK, ENCFF684TOL, ENCFF807MUK 4406890939 ENCODE Processing Pipeline 2ff6a9483c7634166957799749097cbf https://www.encodeproject.org/files/ENCFF288XHQ/@@download/ENCFF288XHQ.bam hg19 released ENCFF376QZH bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF085NFE, ENCFF214JGI, ENCFF807MUK 4253810044 ENCODE Processing Pipeline 1ed240057a699f20a582c5f95e705b0b https://www.encodeproject.org/files/ENCFF376QZH/@@download/ENCFF376QZH.bam hg19 released ENCFF024XNZ bigWig signal p-value ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF288XHQ, ENCFF376QZH, ENCFF583FAG 2020992086 ENCODE Processing Pipeline 9e4d002e567e051fe29c91d59b6f5feb https://www.encodeproject.org/files/ENCFF024XNZ/@@download/ENCFF024XNZ.bigWig hg19 released ENCFF463KXG bigWig signal p-value ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF288XHQ, ENCFF583FAG 965417601 ENCODE Processing Pipeline c342d4b3a04c054ef82dca4911d88e47 https://www.encodeproject.org/files/ENCFF463KXG/@@download/ENCFF463KXG.bigWig hg19 released ENCFF597EWN bigWig fold change over control ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF288XHQ, ENCFF583FAG 1085278082 ENCODE Processing Pipeline 6debe2143c8ab1fb4bf68202b8f1b76b https://www.encodeproject.org/files/ENCFF597EWN/@@download/ENCFF597EWN.bigWig hg19 released ENCFF948WIS bigWig signal p-value ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF376QZH 881794687 ENCODE Processing Pipeline 0ab9994ab2276011e4ad6f730c4fd556 https://www.encodeproject.org/files/ENCFF948WIS/@@download/ENCFF948WIS.bigWig hg19 released ENCFF639JWG bigWig fold change over control ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF376QZH 1098157440 ENCODE Processing Pipeline 0b7ea75e5c60bacf04e7cab13026277e https://www.encodeproject.org/files/ENCFF639JWG/@@download/ENCFF639JWG.bigWig hg19 released ENCFF023ENJ bigWig fold change over control ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF288XHQ, ENCFF376QZH, ENCFF583FAG 1995177930 ENCODE Processing Pipeline 5bdff6a18377929a6bdb7a79c1571208 https://www.encodeproject.org/files/ENCFF023ENJ/@@download/ENCFF023ENJ.bigWig hg19 released ENCFF427GLG bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF376QZH 6216994 ENCODE Processing Pipeline a071cadd074ce4334e34dc1ae939aa8d https://www.encodeproject.org/files/ENCFF427GLG/@@download/ENCFF427GLG.bed.gz hg19 released ENCFF142BLA bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF288XHQ, ENCFF376QZH, ENCFF583FAG 7070110 ENCODE Processing Pipeline 6d8166f070b0d0ee89774504f5feb97c https://www.encodeproject.org/files/ENCFF142BLA/@@download/ENCFF142BLA.bed.gz hg19 released ENCFF960ASZ bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF288XHQ, ENCFF583FAG 5979369 ENCODE Processing Pipeline 7bfba58b6d1de5310acd4c6e47da5fde https://www.encodeproject.org/files/ENCFF960ASZ/@@download/ENCFF960ASZ.bed.gz hg19 released ENCFF370EVY bigBed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF960ASZ 11181892 ENCODE Processing Pipeline aacf895f003e498aa1abf57dc12eea1b https://www.encodeproject.org/files/ENCFF370EVY/@@download/ENCFF370EVY.bigBed hg19 released ENCFF200EQP bed narrowPeak conservative idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF142BLA, ENCFF427GLG, ENCFF960ASZ 43784 ENCODE Processing Pipeline fdc6f94fdfcc8aaf8ff01734356d22b8 https://www.encodeproject.org/files/ENCFF200EQP/@@download/ENCFF200EQP.bed.gz hg19 released ENCFF828ZDG bigBed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF427GLG 11164785 ENCODE Processing Pipeline 82ffd3c969459abd61cef4086e737857 https://www.encodeproject.org/files/ENCFF828ZDG/@@download/ENCFF828ZDG.bigBed hg19 released ENCFF991TLF bigBed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF142BLA 11116750 ENCODE Processing Pipeline 61d4c11af5217f905ad9abcbd2b12d13 https://www.encodeproject.org/files/ENCFF991TLF/@@download/ENCFF991TLF.bigBed hg19 released ENCFF394QCH bigBed narrowPeak optimal idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF686LJE 194043 ENCODE Processing Pipeline 091a98d55c3a6e635e9142b477a4c8ab https://www.encodeproject.org/files/ENCFF394QCH/@@download/ENCFF394QCH.bigBed hg19 released ENCFF118MIZ bigBed narrowPeak conservative idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF200EQP 140957 ENCODE Processing Pipeline bddcea4510a15c7202abc90adcea4d71 https://www.encodeproject.org/files/ENCFF118MIZ/@@download/ENCFF118MIZ.bigBed hg19 released ENCFF686LJE bed narrowPeak optimal idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF142BLA, ENCFF427GLG, ENCFF960ASZ 75751 ENCODE Processing Pipeline 2e59e555172d67a4f1c4cf2637a57378 https://www.encodeproject.org/files/ENCFF686LJE/@@download/ENCFF686LJE.bed.gz hg19 released ENCFF527PRI bam unfiltered alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085NFE, ENCFF214JGI, ENCFF643CGH 5004632317 ENCODE Processing Pipeline f0945cb247f655eb39a6014ce8aeb638 https://www.encodeproject.org/files/ENCFF527PRI/@@download/ENCFF527PRI.bam GRCh38 released ENCFF115ODC bam unfiltered alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF099ZTK, ENCFF643CGH, ENCFF684TOL 5207574180 ENCODE Processing Pipeline 157155b11798ff489497277c7cd4b2ea https://www.encodeproject.org/files/ENCFF115ODC/@@download/ENCFF115ODC.bam GRCh38 released ENCFF953GQZ bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085NFE, ENCFF214JGI, ENCFF643CGH 4262536430 ENCODE Processing Pipeline e1e047fde4ac1b380909a9d291f34895 https://www.encodeproject.org/files/ENCFF953GQZ/@@download/ENCFF953GQZ.bam GRCh38 released ENCFF266ROF bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF099ZTK, ENCFF643CGH, ENCFF684TOL 4415441191 ENCODE Processing Pipeline 2904dc84206784bb6e877d397aa0419d https://www.encodeproject.org/files/ENCFF266ROF/@@download/ENCFF266ROF.bam GRCh38 released ENCFF068EIF bigWig signal p-value ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF266ROF, ENCFF426RDP 1058596076 ENCODE Processing Pipeline a455064c073d86578969fb5ae4d2d870 https://www.encodeproject.org/files/ENCFF068EIF/@@download/ENCFF068EIF.bigWig GRCh38 released ENCFF837IPP bigWig signal p-value ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF953GQZ 1004942462 ENCODE Processing Pipeline a7cea26e23cf1e098fa9cf9408addd25 https://www.encodeproject.org/files/ENCFF837IPP/@@download/ENCFF837IPP.bigWig GRCh38 released ENCFF812VIR bigWig signal p-value ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF266ROF, ENCFF291AFY, ENCFF426RDP, ENCFF953GQZ 1521683147 ENCODE Processing Pipeline fae4c946a92bbf13f08a004e7e384fba https://www.encodeproject.org/files/ENCFF812VIR/@@download/ENCFF812VIR.bigWig GRCh38 released ENCFF057PEX bigWig fold change over control ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF266ROF, ENCFF426RDP 1074747455 ENCODE Processing Pipeline 9285c1b95e74b032cd67554d1261ffdb https://www.encodeproject.org/files/ENCFF057PEX/@@download/ENCFF057PEX.bigWig GRCh38 released ENCFF568UXG bigWig fold change over control ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF953GQZ 1100858020 ENCODE Processing Pipeline 97f23e7fe4e5f0d4d7bfa5afff9a4615 https://www.encodeproject.org/files/ENCFF568UXG/@@download/ENCFF568UXG.bigWig GRCh38 released ENCFF737EQQ bigWig fold change over control ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF266ROF, ENCFF291AFY, ENCFF426RDP, ENCFF953GQZ 2040393401 ENCODE Processing Pipeline d030300fea6f83d726b6be730548c035 https://www.encodeproject.org/files/ENCFF737EQQ/@@download/ENCFF737EQQ.bigWig GRCh38 released ENCFF524SET bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF266ROF, ENCFF426RDP 5826218 ENCODE Processing Pipeline 619c4f5d33d77f624e863816ab6d5909 https://www.encodeproject.org/files/ENCFF524SET/@@download/ENCFF524SET.bed.gz GRCh38 released ENCFF739ADY bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF953GQZ 6046932 ENCODE Processing Pipeline 30b3bde90249dd12b3f5a8345a043417 https://www.encodeproject.org/files/ENCFF739ADY/@@download/ENCFF739ADY.bed.gz GRCh38 released ENCFF457LCQ bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF266ROF, ENCFF291AFY, ENCFF426RDP, ENCFF953GQZ 7028396 ENCODE Processing Pipeline af3ba7fad4089eefaa876c940cd2f427 https://www.encodeproject.org/files/ENCFF457LCQ/@@download/ENCFF457LCQ.bed.gz GRCh38 released ENCFF285QCR bigBed narrowPeak conservative idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF878CYO 172344 ENCODE Processing Pipeline 49184747b41df22453079efb235c09da https://www.encodeproject.org/files/ENCFF285QCR/@@download/ENCFF285QCR.bigBed GRCh38 released ENCFF245NVD bigBed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF524SET 11175473 ENCODE Processing Pipeline 5da0538a6f57864109234337bee51f78 https://www.encodeproject.org/files/ENCFF245NVD/@@download/ENCFF245NVD.bigBed GRCh38 released ENCFF427LNG bigBed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF739ADY 11164073 ENCODE Processing Pipeline 24cb8eaf88ad61f3fb4d83a21afd2386 https://www.encodeproject.org/files/ENCFF427LNG/@@download/ENCFF427LNG.bigBed GRCh38 released ENCFF578NMN bed narrowPeak optimal idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF457LCQ, ENCFF524SET, ENCFF739ADY 83034 ENCODE Processing Pipeline 058d88cd7c67e3f2d9b7cfd2e7cc6b81 https://www.encodeproject.org/files/ENCFF578NMN/@@download/ENCFF578NMN.bed.gz GRCh38 released ENCFF313FSM bigBed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF457LCQ 11124477 ENCODE Processing Pipeline eb658d10779dea92b77ff350c92acff7 https://www.encodeproject.org/files/ENCFF313FSM/@@download/ENCFF313FSM.bigBed GRCh38 released ENCFF878CYO bed narrowPeak conservative idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF457LCQ, ENCFF524SET, ENCFF739ADY 47543 ENCODE Processing Pipeline 877cc49e111ad528182034cf4958f8fe https://www.encodeproject.org/files/ENCFF878CYO/@@download/ENCFF878CYO.bed.gz GRCh38 released ENCFF806DUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF578NMN 242470 ENCODE Processing Pipeline ab86bf7526bfb8e59f1345801f3845ee https://www.encodeproject.org/files/ENCFF806DUZ/@@download/ENCFF806DUZ.bigBed GRCh38 released ENCFF202MPS fastq reads ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF153BBD 2479661894 Michael Snyder, Stanford 43d380146c67993468e807cdd8e04b12 SRA:SRR6214084 https://www.encodeproject.org/files/ENCFF202MPS/@@download/ENCFF202MPS.fastq.gz Illumina HiSeq 4000 /files/ENCFF032ITD/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF153BBD fastq reads ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF202MPS 2800963013 Michael Snyder, Stanford f7ee17d4fa680d59606e058e415ff36e SRA:SRR6214084 https://www.encodeproject.org/files/ENCFF153BBD/@@download/ENCFF153BBD.fastq.gz Illumina HiSeq 4000 /files/ENCFF459DWM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF006HFG bam unfiltered alignments ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF153BBD, ENCFF202MPS, ENCFF807MUK 4991659799 ENCODE Processing Pipeline eb59566194ca3315e3f467c8013b9523 https://www.encodeproject.org/files/ENCFF006HFG/@@download/ENCFF006HFG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF336YLG bam alignments ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF153BBD, ENCFF202MPS, ENCFF807MUK 4032182037 ENCODE Processing Pipeline 0e85b710153dbaba2a2cfa66d7af6f86 https://www.encodeproject.org/files/ENCFF336YLG/@@download/ENCFF336YLG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF400HPP bam unfiltered alignments ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF153BBD, ENCFF202MPS, ENCFF643CGH 4997041969 ENCODE Processing Pipeline 70887dd17750e35b851a9fa9013497be https://www.encodeproject.org/files/ENCFF400HPP/@@download/ENCFF400HPP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF578UPT bam alignments ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF153BBD, ENCFF202MPS, ENCFF643CGH 4034724652 ENCODE Processing Pipeline 6e04af2292cd1781ea3d0b2041b800ee https://www.encodeproject.org/files/ENCFF578UPT/@@download/ENCFF578UPT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF365UJS bigWig signal p-value ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300XKS, ENCFF336YLG 1035399167 ENCODE Processing Pipeline 7cec39d0726ec3005e8e1933a77b703d https://www.encodeproject.org/files/ENCFF365UJS/@@download/ENCFF365UJS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF572RSY bigWig fold change over control ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300XKS, ENCFF336YLG 1254122842 ENCODE Processing Pipeline 2bf4bb53b48f955353ade3a6359500b6 https://www.encodeproject.org/files/ENCFF572RSY/@@download/ENCFF572RSY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF955JLZ bigBed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF747PUI 11673114 ENCODE Processing Pipeline a52d4ed7b6921d354fc7e64962128e3f https://www.encodeproject.org/files/ENCFF955JLZ/@@download/ENCFF955JLZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF520JZM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF747PUI 700769 ENCODE Processing Pipeline 12909e8208754d0c074e96cab115db3e https://www.encodeproject.org/files/ENCFF520JZM/@@download/ENCFF520JZM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF747PUI bed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300XKS, ENCFF336YLG 6466857 ENCODE Processing Pipeline cffd4c21e3adb5a3b1c38609954c2b86 https://www.encodeproject.org/files/ENCFF747PUI/@@download/ENCFF747PUI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF048TEG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF520JZM 1224801 ENCODE Processing Pipeline 225c0a01d2f111eda86c1e46b265ddd7 https://www.encodeproject.org/files/ENCFF048TEG/@@download/ENCFF048TEG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF084QPC bigWig signal p-value ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF578UPT, ENCFF700NXF 1036194612 ENCODE Processing Pipeline bb44856986c85db79c2b217850ad3314 https://www.encodeproject.org/files/ENCFF084QPC/@@download/ENCFF084QPC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF866OIP bed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF578UPT, ENCFF700NXF 6469462 ENCODE Processing Pipeline 1797131b6da7c64f0cf649cc0b25fac7 https://www.encodeproject.org/files/ENCFF866OIP/@@download/ENCFF866OIP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF698JTY bigWig fold change over control ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF578UPT, ENCFF700NXF 1255174014 ENCODE Processing Pipeline c34a910ac797b099ecd84370bf2f6b5e https://www.encodeproject.org/files/ENCFF698JTY/@@download/ENCFF698JTY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF433DCM bigBed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF866OIP 11688590 ENCODE Processing Pipeline 154f28a337b8e7876d9acece7b8b88f2 https://www.encodeproject.org/files/ENCFF433DCM/@@download/ENCFF433DCM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF728IYI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF866OIP 704227 ENCODE Processing Pipeline ca9907396aa7d5df6f7a51367dbf6b5b https://www.encodeproject.org/files/ENCFF728IYI/@@download/ENCFF728IYI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF330SCA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF728IYI 1232213 ENCODE Processing Pipeline 09429e6971857eb2cf4afde351c83502 https://www.encodeproject.org/files/ENCFF330SCA/@@download/ENCFF330SCA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF934TSI fastq reads ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF782COM 4378190805 Michael Snyder, Stanford f485f8a4cc7a83b936de0e179671f3e4 SRA:SRR6212974 https://www.encodeproject.org/files/ENCFF934TSI/@@download/ENCFF934TSI.fastq.gz Illumina HiSeq 4000 /files/ENCFF353KTB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF782COM fastq reads ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF934TSI 4013500868 Michael Snyder, Stanford 3818c6d61817217fc76a2a748c747403 SRA:SRR6212974 https://www.encodeproject.org/files/ENCFF782COM/@@download/ENCFF782COM.fastq.gz Illumina HiSeq 4000 /files/ENCFF415UOP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF519HTQ bam unfiltered alignments ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF782COM, ENCFF807MUK, ENCFF934TSI 7689011680 ENCODE Processing Pipeline f788d85b1146e830039d2272ec8c6094 https://www.encodeproject.org/files/ENCFF519HTQ/@@download/ENCFF519HTQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF681NKV bam unfiltered alignments ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF782COM, ENCFF934TSI 7689258193 ENCODE Processing Pipeline bdd23e7dfe43c9549f801cc38a8acbfe https://www.encodeproject.org/files/ENCFF681NKV/@@download/ENCFF681NKV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF546PNW bam alignments ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF782COM, ENCFF807MUK, ENCFF934TSI 3933559535 ENCODE Processing Pipeline 881c41974a8603355b22b370b3e5c960 https://www.encodeproject.org/files/ENCFF546PNW/@@download/ENCFF546PNW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF076LAL bam alignments ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF782COM, ENCFF934TSI 3944951342 ENCODE Processing Pipeline a25df450c58af9f7decff2012ea67af5 https://www.encodeproject.org/files/ENCFF076LAL/@@download/ENCFF076LAL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF793JKF bigWig signal p-value ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF191LEP, ENCFF546PNW 1068333762 ENCODE Processing Pipeline ad85ac59303318c6f14dd251635b84a9 https://www.encodeproject.org/files/ENCFF793JKF/@@download/ENCFF793JKF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF017ZLR bigWig fold change over control ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF191LEP, ENCFF546PNW 1304767507 ENCODE Processing Pipeline 8e36b4dd00bb29066a58f5872185304e https://www.encodeproject.org/files/ENCFF017ZLR/@@download/ENCFF017ZLR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF816LOA bigBed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF173TPC 11285670 ENCODE Processing Pipeline c1a4f03eda1cf9558b5b0087aefe38dd https://www.encodeproject.org/files/ENCFF816LOA/@@download/ENCFF816LOA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF637FOR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF173TPC 258148 ENCODE Processing Pipeline b47d818695eede8a4856409220c10f6f https://www.encodeproject.org/files/ENCFF637FOR/@@download/ENCFF637FOR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF173TPC bed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF191LEP, ENCFF546PNW 6259235 ENCODE Processing Pipeline e513594478f6683c4ed945a918cd417a https://www.encodeproject.org/files/ENCFF173TPC/@@download/ENCFF173TPC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF562UQA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF637FOR 492037 ENCODE Processing Pipeline 1e939ae0a8056bc51634d1406c0ee08b https://www.encodeproject.org/files/ENCFF562UQA/@@download/ENCFF562UQA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF436ENK bed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF047KMB, ENCFF076LAL 6261302 ENCODE Processing Pipeline 0bfe9fee946edcce43c9b41d903b86f1 https://www.encodeproject.org/files/ENCFF436ENK/@@download/ENCFF436ENK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF190ANB bigWig signal p-value ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF047KMB, ENCFF076LAL 1046345512 ENCODE Processing Pipeline 0727ad4cf152aa6527d041807b1f9d8b https://www.encodeproject.org/files/ENCFF190ANB/@@download/ENCFF190ANB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF041MGW bigWig fold change over control ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF047KMB, ENCFF076LAL 1286445678 ENCODE Processing Pipeline 3e1691da21cdd887d49bb849d8fb224c https://www.encodeproject.org/files/ENCFF041MGW/@@download/ENCFF041MGW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF149QRU bigBed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF436ENK 11293159 ENCODE Processing Pipeline 8cc7ec03cd95059a670f03fc350198b0 https://www.encodeproject.org/files/ENCFF149QRU/@@download/ENCFF149QRU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF916FGF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF436ENK 263275 ENCODE Processing Pipeline f96b76d134f54a31962e14f3fba76aae https://www.encodeproject.org/files/ENCFF916FGF/@@download/ENCFF916FGF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF509YTK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF916FGF 501470 ENCODE Processing Pipeline 3e10cfd53f76fa0a570e256e26e5bb58 https://www.encodeproject.org/files/ENCFF509YTK/@@download/ENCFF509YTK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF030BFQ fastq reads ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF748NXL 4455168292 Michael Snyder, Stanford 980034e08897e90b2c81d657b94b7eda SRA:SRR5111307 https://www.encodeproject.org/files/ENCFF030BFQ/@@download/ENCFF030BFQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF748NXL fastq reads ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF030BFQ 4404899509 Michael Snyder, Stanford 22e1d40f39840af5321883f14888e5e9 SRA:SRR5111307 https://www.encodeproject.org/files/ENCFF748NXL/@@download/ENCFF748NXL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF279UPH fastq reads ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF031HGS 2590252961 Michael Snyder, Stanford 6dd6a03f19af0a0fbc3cac7705268e12 SRA:SRR5111308 https://www.encodeproject.org/files/ENCFF279UPH/@@download/ENCFF279UPH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF031HGS fastq reads ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF279UPH 2622028694 Michael Snyder, Stanford bcb7c3d0884eae37e5a153329705b380 SRA:SRR5111308 https://www.encodeproject.org/files/ENCFF031HGS/@@download/ENCFF031HGS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF643VOY bam unfiltered alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 100 ENCFF031HGS, ENCFF279UPH, ENCFF807MUK 5399483277 ENCODE Processing Pipeline 756c989dd0a928f0af4875e62b39407b https://www.encodeproject.org/files/ENCFF643VOY/@@download/ENCFF643VOY.bam hg19 released borderline replicate concordance ENCFF853OWO bam unfiltered alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 100 ENCFF030BFQ, ENCFF748NXL, ENCFF807MUK 8853989847 ENCODE Processing Pipeline e4e8a6dc3e170b2aeb8546b97d0622f4 https://www.encodeproject.org/files/ENCFF853OWO/@@download/ENCFF853OWO.bam hg19 released borderline replicate concordance ENCFF973SCA bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 100 ENCFF031HGS, ENCFF279UPH, ENCFF807MUK 4283910626 ENCODE Processing Pipeline 31a29d1a450363b3192c46e286506502 https://www.encodeproject.org/files/ENCFF973SCA/@@download/ENCFF973SCA.bam hg19 released borderline replicate concordance ENCFF566XEP bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 100 ENCFF030BFQ, ENCFF748NXL, ENCFF807MUK 6810454316 ENCODE Processing Pipeline 4899da5d9ae00ad87f878005b614e030 https://www.encodeproject.org/files/ENCFF566XEP/@@download/ENCFF566XEP.bam hg19 released borderline replicate concordance ENCFF093IGV bam unfiltered alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 100 ENCFF031HGS, ENCFF279UPH, ENCFF643CGH 5412461632 ENCODE Processing Pipeline 463c24d8f61583bcc2bf501e8c17686c https://www.encodeproject.org/files/ENCFF093IGV/@@download/ENCFF093IGV.bam GRCh38 released borderline replicate concordance ENCFF426VJL bam unfiltered alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 100 ENCFF030BFQ, ENCFF643CGH, ENCFF748NXL 8871839195 ENCODE Processing Pipeline 176a9459bc4d170faeb3dee7ee8b80d6 https://www.encodeproject.org/files/ENCFF426VJL/@@download/ENCFF426VJL.bam GRCh38 released borderline replicate concordance ENCFF696RXB bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 100 ENCFF031HGS, ENCFF279UPH, ENCFF643CGH 4290671027 ENCODE Processing Pipeline 3c951338b7b405f8c859f425fefebebc https://www.encodeproject.org/files/ENCFF696RXB/@@download/ENCFF696RXB.bam GRCh38 released borderline replicate concordance ENCFF455ZKM bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 100 ENCFF030BFQ, ENCFF643CGH, ENCFF748NXL 6820674517 ENCODE Processing Pipeline 02ee6cc7e1a5652569ab4c4c81be4f65 https://www.encodeproject.org/files/ENCFF455ZKM/@@download/ENCFF455ZKM.bam GRCh38 released borderline replicate concordance ENCFF176AYP bigWig signal p-value ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF455ZKM 1390069392 ENCODE Processing Pipeline 7a6660516c46b1764995fd8f6ff64640 https://www.encodeproject.org/files/ENCFF176AYP/@@download/ENCFF176AYP.bigWig GRCh38 released borderline replicate concordance ENCFF214UDM bigWig signal p-value ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF455ZKM, ENCFF696RXB 1866689072 ENCODE Processing Pipeline 5a5cb361acdc9c98eeb92f95e7e4e89e https://www.encodeproject.org/files/ENCFF214UDM/@@download/ENCFF214UDM.bigWig GRCh38 released borderline replicate concordance ENCFF717UTX bigWig fold change over control ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF426RDP, ENCFF696RXB 969590393 ENCODE Processing Pipeline b9efb14eb7cd33fbd8012cd1fa9cbe9f https://www.encodeproject.org/files/ENCFF717UTX/@@download/ENCFF717UTX.bigWig GRCh38 released borderline replicate concordance ENCFF949AAM bigWig signal p-value ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF426RDP, ENCFF696RXB 981413617 ENCODE Processing Pipeline 9300095f8f12e52073c61513a591ae09 https://www.encodeproject.org/files/ENCFF949AAM/@@download/ENCFF949AAM.bigWig GRCh38 released borderline replicate concordance ENCFF380RZP bigWig fold change over control ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF455ZKM 1758323979 ENCODE Processing Pipeline ed45a08567a70b85f8d5c0c367e99ebc https://www.encodeproject.org/files/ENCFF380RZP/@@download/ENCFF380RZP.bigWig GRCh38 released borderline replicate concordance ENCFF076INM bigWig fold change over control ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF455ZKM, ENCFF696RXB 2118701275 ENCODE Processing Pipeline 62055eec0e1a47ce90fdca4ccd180656 https://www.encodeproject.org/files/ENCFF076INM/@@download/ENCFF076INM.bigWig GRCh38 released borderline replicate concordance ENCFF832ZFL bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF426RDP, ENCFF696RXB 5588379 ENCODE Processing Pipeline 9215b2c2dd65c8d1555c38c2a9fee1f2 https://www.encodeproject.org/files/ENCFF832ZFL/@@download/ENCFF832ZFL.bed.gz GRCh38 released borderline replicate concordance ENCFF673NYY bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF455ZKM, ENCFF696RXB 7090027 ENCODE Processing Pipeline dfdb9cfb4b52e45f04fa6e702d0a0cd9 https://www.encodeproject.org/files/ENCFF673NYY/@@download/ENCFF673NYY.bed.gz GRCh38 released borderline replicate concordance ENCFF291AFC bigBed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF832ZFL 11242192 ENCODE Processing Pipeline 40922dd4a1cfbb130432fa5d5c642830 https://www.encodeproject.org/files/ENCFF291AFC/@@download/ENCFF291AFC.bigBed GRCh38 released borderline replicate concordance ENCFF352YKJ bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF455ZKM 6797541 ENCODE Processing Pipeline 03fdf73b6155a7e44657ad0b8ea719c5 https://www.encodeproject.org/files/ENCFF352YKJ/@@download/ENCFF352YKJ.bed.gz GRCh38 released borderline replicate concordance ENCFF745ZVG bigBed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF352YKJ 11261258 ENCODE Processing Pipeline d8af13bbf53a6a557562d57999fe7266 https://www.encodeproject.org/files/ENCFF745ZVG/@@download/ENCFF745ZVG.bigBed GRCh38 released borderline replicate concordance ENCFF748OZT bigBed narrowPeak optimal idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF780WLS 364506 ENCODE Processing Pipeline de425feda77f7c6197751ca7cedd82d6 https://www.encodeproject.org/files/ENCFF748OZT/@@download/ENCFF748OZT.bigBed GRCh38 released borderline replicate concordance ENCFF482CLE bigBed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF673NYY 11174213 ENCODE Processing Pipeline 3ab409edd5aefd2ab8eb07be958d0fc6 https://www.encodeproject.org/files/ENCFF482CLE/@@download/ENCFF482CLE.bigBed GRCh38 released borderline replicate concordance ENCFF863GMR bed narrowPeak conservative idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF352YKJ, ENCFF419RSJ, ENCFF673NYY, ENCFF832ZFL 108570 ENCODE Processing Pipeline 0304aea777629305b415220dc774d075 https://www.encodeproject.org/files/ENCFF863GMR/@@download/ENCFF863GMR.bed.gz GRCh38 released borderline replicate concordance ENCFF479GNO bigBed narrowPeak conservative idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF863GMR 257353 ENCODE Processing Pipeline 50964d56ee313a9fcef9fbb7b1cfb9f0 https://www.encodeproject.org/files/ENCFF479GNO/@@download/ENCFF479GNO.bigBed GRCh38 released borderline replicate concordance ENCFF780WLS bed narrowPeak optimal idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF352YKJ, ENCFF419RSJ, ENCFF673NYY, ENCFF832ZFL 180241 ENCODE Processing Pipeline 1d8a3b7da70da620de296b717e570765 https://www.encodeproject.org/files/ENCFF780WLS/@@download/ENCFF780WLS.bed.gz GRCh38 released borderline replicate concordance ENCFF320CQP bigWig signal p-value ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF973SCA 857355729 ENCODE Processing Pipeline dbbe113b88c2dec74577bd68217d5bfe https://www.encodeproject.org/files/ENCFF320CQP/@@download/ENCFF320CQP.bigWig hg19 released borderline replicate concordance ENCFF544QAO bigWig signal p-value ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG 1692556130 ENCODE Processing Pipeline 9a075d51227e57169ef443235f391147 https://www.encodeproject.org/files/ENCFF544QAO/@@download/ENCFF544QAO.bigWig hg19 released borderline replicate concordance ENCFF272QNG bigWig signal p-value ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG, ENCFF973SCA 1726357502 ENCODE Processing Pipeline 3916406c4b5f6a79d871711bd33511a5 https://www.encodeproject.org/files/ENCFF272QNG/@@download/ENCFF272QNG.bigWig hg19 released borderline replicate concordance ENCFF039ZMQ bigWig fold change over control ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF973SCA 968150452 ENCODE Processing Pipeline 6368e6a96ee7bb930ca5e117f5672b9c https://www.encodeproject.org/files/ENCFF039ZMQ/@@download/ENCFF039ZMQ.bigWig hg19 released borderline replicate concordance ENCFF515PIS bigWig fold change over control ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG 1773317740 ENCODE Processing Pipeline ce2716524bebf19c1a90c63ce4817a13 https://www.encodeproject.org/files/ENCFF515PIS/@@download/ENCFF515PIS.bigWig hg19 released borderline replicate concordance ENCFF684BFS bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG 6787867 ENCODE Processing Pipeline 8319f4102b9aedff494905f19ef8f383 https://www.encodeproject.org/files/ENCFF684BFS/@@download/ENCFF684BFS.bed.gz hg19 released borderline replicate concordance ENCFF613ONR bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF973SCA 5581607 ENCODE Processing Pipeline 6090cd15d03b360d1d73e80487525780 https://www.encodeproject.org/files/ENCFF613ONR/@@download/ENCFF613ONR.bed.gz hg19 released borderline replicate concordance ENCFF578CRL bigBed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF515ZCN 11153377 ENCODE Processing Pipeline 23f0efd1930f9d3a2c46e9a2e3e188e0 https://www.encodeproject.org/files/ENCFF578CRL/@@download/ENCFF578CRL.bigBed hg19 released borderline replicate concordance ENCFF305ALD bigWig fold change over control ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG, ENCFF973SCA 2112218077 ENCODE Processing Pipeline 0fd81d5ae65e8e352bcc1065c0fc118e https://www.encodeproject.org/files/ENCFF305ALD/@@download/ENCFF305ALD.bigWig hg19 released borderline replicate concordance ENCFF086GXL bigBed narrowPeak conservative idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF915HRK 249388 ENCODE Processing Pipeline 7e84bb9eb656e1bbca1f3e90c7fa53d2 https://www.encodeproject.org/files/ENCFF086GXL/@@download/ENCFF086GXL.bigBed hg19 released borderline replicate concordance ENCFF515ZCN bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG, ENCFF973SCA 7079643 ENCODE Processing Pipeline 423083e157daa71423941a92a2cd9de5 https://www.encodeproject.org/files/ENCFF515ZCN/@@download/ENCFF515ZCN.bed.gz hg19 released borderline replicate concordance ENCFF116WDX bigBed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF613ONR 11217920 ENCODE Processing Pipeline 15bec213883703d89346e8c46d109cec https://www.encodeproject.org/files/ENCFF116WDX/@@download/ENCFF116WDX.bigBed hg19 released borderline replicate concordance ENCFF915HRK bed narrowPeak conservative idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF515ZCN, ENCFF613ONR, ENCFF684BFS 105020 ENCODE Processing Pipeline ab2b2f8c9ba66158ffc37adb43dd7166 https://www.encodeproject.org/files/ENCFF915HRK/@@download/ENCFF915HRK.bed.gz hg19 released borderline replicate concordance ENCFF754EOD bigBed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF684BFS 11239602 ENCODE Processing Pipeline f53d2347814b7d70219371482bc3b40f https://www.encodeproject.org/files/ENCFF754EOD/@@download/ENCFF754EOD.bigBed hg19 released borderline replicate concordance ENCFF447FPV bed narrowPeak optimal idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF515ZCN, ENCFF613ONR, ENCFF684BFS 172266 ENCODE Processing Pipeline b97a0af53cba492b881017ed8ba0ea15 https://www.encodeproject.org/files/ENCFF447FPV/@@download/ENCFF447FPV.bed.gz hg19 released borderline replicate concordance ENCFF322OXL bigBed narrowPeak optimal idr thresholded peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF447FPV 349196 ENCODE Processing Pipeline ef25047c44a894d85d2463d884512348 https://www.encodeproject.org/files/ENCFF322OXL/@@download/ENCFF322OXL.bigBed hg19 released borderline replicate concordance ENCFF306ZHJ bam unfiltered alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF202GQI, ENCFF291XCZ, ENCFF807MUK 6615855041 ENCODE Processing Pipeline 9500f8120fa101e82b2eb7b8d9852b1f https://www.encodeproject.org/files/ENCFF306ZHJ/@@download/ENCFF306ZHJ.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF967TYE bam unfiltered alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF156UAQ, ENCFF498MQF, ENCFF807MUK 3475669128 ENCODE Processing Pipeline 1db47bf0ed5f9b912daecbac943c2033 https://www.encodeproject.org/files/ENCFF967TYE/@@download/ENCFF967TYE.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF202GQI fastq reads ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF291XCZ 3052903083 Michael Snyder, Stanford 572ac4bc14a4af5fa0d8b33bd6d59817 https://www.encodeproject.org/files/ENCFF202GQI/@@download/ENCFF202GQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF156UAQ fastq reads ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF498MQF 1560989719 Michael Snyder, Stanford 4bbd0d1d666328501050760e1f0aab64 https://www.encodeproject.org/files/ENCFF156UAQ/@@download/ENCFF156UAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF291XCZ fastq reads ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF202GQI 3065076355 Michael Snyder, Stanford c596035f1b36555c7396d7230933cb6d https://www.encodeproject.org/files/ENCFF291XCZ/@@download/ENCFF291XCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF498MQF fastq reads ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF156UAQ 1522791652 Michael Snyder, Stanford ce5e287cd4f9d568e2f9ee5fcc0baee8 https://www.encodeproject.org/files/ENCFF498MQF/@@download/ENCFF498MQF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF214ARE bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF156UAQ, ENCFF498MQF, ENCFF807MUK 2950767799 ENCODE Processing Pipeline c1179be7f1b2b2b2088d5575a5c81f5e https://www.encodeproject.org/files/ENCFF214ARE/@@download/ENCFF214ARE.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF507XLD bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF202GQI, ENCFF291XCZ, ENCFF807MUK 5490844705 ENCODE Processing Pipeline 3b08cedd8c4f924360023e5d05c07613 https://www.encodeproject.org/files/ENCFF507XLD/@@download/ENCFF507XLD.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF181DKI bigWig signal p-value ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF507XLD, ENCFF583FAG 1218168754 ENCODE Processing Pipeline 891aac9c4f380d92533f46abece7169a https://www.encodeproject.org/files/ENCFF181DKI/@@download/ENCFF181DKI.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF645EWA bigWig signal p-value ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF214ARE 948752944 ENCODE Processing Pipeline 575dc83813d7aada96a87c3461875619 https://www.encodeproject.org/files/ENCFF645EWA/@@download/ENCFF645EWA.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF507JIM bigWig signal p-value ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF214ARE, ENCFF507XLD, ENCFF583FAG 1583265007 ENCODE Processing Pipeline eb59fee23b80e0e907de4dfe3f665401 https://www.encodeproject.org/files/ENCFF507JIM/@@download/ENCFF507JIM.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF479NSB bigWig fold change over control ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF507XLD, ENCFF583FAG 1186985892 ENCODE Processing Pipeline 56660afbc22de74ee2054a9783ee0d0c https://www.encodeproject.org/files/ENCFF479NSB/@@download/ENCFF479NSB.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF584IZJ bigWig fold change over control ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF214ARE 909503591 ENCODE Processing Pipeline daa569e8de57622c82c53667c17362db https://www.encodeproject.org/files/ENCFF584IZJ/@@download/ENCFF584IZJ.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF264KEG bigWig fold change over control ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF214ARE, ENCFF507XLD, ENCFF583FAG 1956949538 ENCODE Processing Pipeline faa61c832f4647fd9c96b56cdf75293b https://www.encodeproject.org/files/ENCFF264KEG/@@download/ENCFF264KEG.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF503OBN bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF214ARE 5755072 ENCODE Processing Pipeline f8794d5e8f772bef1577ef5fbc5d51f8 https://www.encodeproject.org/files/ENCFF503OBN/@@download/ENCFF503OBN.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF512ZVD bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF507XLD, ENCFF583FAG 6419709 ENCODE Processing Pipeline e5228703456608c4e83bc33db9424352 https://www.encodeproject.org/files/ENCFF512ZVD/@@download/ENCFF512ZVD.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF013MRQ bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF214ARE, ENCFF507XLD, ENCFF583FAG 7009215 ENCODE Processing Pipeline 133e5d1dd276fdfb1879535cfc357162 https://www.encodeproject.org/files/ENCFF013MRQ/@@download/ENCFF013MRQ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF494XPM bigBed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF013MRQ 11194940 ENCODE Processing Pipeline f11ca7e2dd8857f68f15692e677e8b4c https://www.encodeproject.org/files/ENCFF494XPM/@@download/ENCFF494XPM.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF420KDU bigBed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF503OBN 11250337 ENCODE Processing Pipeline c990e4e1b0b0426a4d8b92f770cea871 https://www.encodeproject.org/files/ENCFF420KDU/@@download/ENCFF420KDU.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF543FLC bigBed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF512ZVD 11263501 ENCODE Processing Pipeline bfc12ce95b8f0dffd84a2ac0e91a2409 https://www.encodeproject.org/files/ENCFF543FLC/@@download/ENCFF543FLC.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF771NAV bam unfiltered alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF156UAQ, ENCFF498MQF, ENCFF643CGH 3482095348 ENCODE Processing Pipeline c733da639e17f7467726ece5274eb0b4 https://www.encodeproject.org/files/ENCFF771NAV/@@download/ENCFF771NAV.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF243KJI bam unfiltered alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF202GQI, ENCFF291XCZ, ENCFF643CGH 6627500957 ENCODE Processing Pipeline a5221bc35c40e5e30bc36a34b71d5537 https://www.encodeproject.org/files/ENCFF243KJI/@@download/ENCFF243KJI.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF721HMO bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF156UAQ, ENCFF498MQF, ENCFF643CGH 2954895614 ENCODE Processing Pipeline 10354562fd5daa0d4b8435126dc87a03 https://www.encodeproject.org/files/ENCFF721HMO/@@download/ENCFF721HMO.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF309ZZR bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF202GQI, ENCFF291XCZ, ENCFF643CGH 5497021013 ENCODE Processing Pipeline 14596a3be35b2abd597c6a62cdf53f29 https://www.encodeproject.org/files/ENCFF309ZZR/@@download/ENCFF309ZZR.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF167WDS bigWig signal p-value ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF309ZZR, ENCFF426RDP 1225986404 ENCODE Processing Pipeline 821eae4549b8f013a4ca497d68e8ba2a https://www.encodeproject.org/files/ENCFF167WDS/@@download/ENCFF167WDS.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF946HKU bigWig signal p-value ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF721HMO 998472931 ENCODE Processing Pipeline 2a6d162a602814616b40e8aeb3685809 https://www.encodeproject.org/files/ENCFF946HKU/@@download/ENCFF946HKU.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF240JTU bigWig signal p-value ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF309ZZR, ENCFF426RDP, ENCFF721HMO 1884732318 ENCODE Processing Pipeline 1d8c02ea8ded54db7bce06b275a5f1bb https://www.encodeproject.org/files/ENCFF240JTU/@@download/ENCFF240JTU.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF849WBG bigWig fold change over control ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF309ZZR, ENCFF426RDP 1198798445 ENCODE Processing Pipeline 989533b62adb4be7b2c3cc9dbd931545 https://www.encodeproject.org/files/ENCFF849WBG/@@download/ENCFF849WBG.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF118SLL bigWig fold change over control ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF721HMO 897878488 ENCODE Processing Pipeline 5135faa03b44ce5e82968b5a73dbd391 https://www.encodeproject.org/files/ENCFF118SLL/@@download/ENCFF118SLL.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF099BUE bigWig fold change over control ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF309ZZR, ENCFF426RDP, ENCFF721HMO 1959451930 ENCODE Processing Pipeline 3fb22f8cfc6bc249d1cd944ab7871189 https://www.encodeproject.org/files/ENCFF099BUE/@@download/ENCFF099BUE.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF361XEW bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF309ZZR, ENCFF426RDP 6232625 ENCODE Processing Pipeline ace3b59564be1f5ac4f14b7c1894e4e4 https://www.encodeproject.org/files/ENCFF361XEW/@@download/ENCFF361XEW.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF501TOV bigBed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361XEW 11262801 ENCODE Processing Pipeline b5b8c6dfd66c5ee0fad2d73ffcda4417 https://www.encodeproject.org/files/ENCFF501TOV/@@download/ENCFF501TOV.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF501XUC bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF309ZZR, ENCFF426RDP, ENCFF721HMO 6931992 ENCODE Processing Pipeline 0e337b23ae21304e26df133b0019bfa3 https://www.encodeproject.org/files/ENCFF501XUC/@@download/ENCFF501XUC.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF737PKU bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF721HMO 5567075 ENCODE Processing Pipeline 80d5ff72a24cbebfd280d49b68e2c288 https://www.encodeproject.org/files/ENCFF737PKU/@@download/ENCFF737PKU.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF420LEY bigBed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF737PKU 11238415 ENCODE Processing Pipeline 3829842431e6e1ac8a549c14fcc412ce https://www.encodeproject.org/files/ENCFF420LEY/@@download/ENCFF420LEY.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF242BFV bigBed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF501XUC 11212524 ENCODE Processing Pipeline 69a7056b13184d3f2b4c4c644c11d612 https://www.encodeproject.org/files/ENCFF242BFV/@@download/ENCFF242BFV.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF409YQR bigBed narrowPeak conservative idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF920HMY 213253 ENCODE Processing Pipeline ea8506f0fe010428d52b839e5b2d221c https://www.encodeproject.org/files/ENCFF409YQR/@@download/ENCFF409YQR.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF924SKM bigBed narrowPeak optimal idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF059LJD 318554 ENCODE Processing Pipeline f57799d7492b12b2a05c065f20527c11 https://www.encodeproject.org/files/ENCFF924SKM/@@download/ENCFF924SKM.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF920HMY bed narrowPeak conservative idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF361XEW, ENCFF419RSJ, ENCFF501XUC, ENCFF737PKU 77775 ENCODE Processing Pipeline b35f7cc305e61fc88cdd49cf340ef790 https://www.encodeproject.org/files/ENCFF920HMY/@@download/ENCFF920HMY.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF059LJD bed narrowPeak optimal idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF361XEW, ENCFF419RSJ, ENCFF501XUC, ENCFF737PKU 144123 ENCODE Processing Pipeline c90c18824d92541475a94e2df5b680f2 https://www.encodeproject.org/files/ENCFF059LJD/@@download/ENCFF059LJD.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF963DEW bigBed narrowPeak conservative idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382FIJ 160836 ENCODE Processing Pipeline ec6f4922e92952aa6d5fd91700343ac2 https://www.encodeproject.org/files/ENCFF963DEW/@@download/ENCFF963DEW.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF382FIJ bed narrowPeak conservative idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF013MRQ, ENCFF503OBN, ENCFF512ZVD 66328 ENCODE Processing Pipeline e719c0e4a47390c3808fc723acc0dbee https://www.encodeproject.org/files/ENCFF382FIJ/@@download/ENCFF382FIJ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF587EOD bed narrowPeak optimal idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF013MRQ, ENCFF503OBN, ENCFF512ZVD 119114 ENCODE Processing Pipeline 05c041dc76a925fa1f284c6192e9941c https://www.encodeproject.org/files/ENCFF587EOD/@@download/ENCFF587EOD.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF618QFI bigBed narrowPeak optimal idr thresholded peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF587EOD 228659 ENCODE Processing Pipeline 376548bde2fa5bab8045945949a80349 https://www.encodeproject.org/files/ENCFF618QFI/@@download/ENCFF618QFI.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF412TQO bam unfiltered alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 50 ENCFF070RQL, ENCFF807MUK 2480726891 ENCODE Processing Pipeline 839e416dcc401eec3f1d13117f853076 https://www.encodeproject.org/files/ENCFF412TQO/@@download/ENCFF412TQO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF941IAJ bam unfiltered alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 50 ENCFF779OCL, ENCFF807MUK 1505399506 ENCODE Processing Pipeline 671ab4832e2605966408b47119d431cb https://www.encodeproject.org/files/ENCFF941IAJ/@@download/ENCFF941IAJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF779OCL fastq reads ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 1 50 single-ended 1396929526 Richard Myers, HAIB 67581192b6f26e4269841df74d81073c SRA:SRR5339534 https://www.encodeproject.org/files/ENCFF779OCL/@@download/ENCFF779OCL.fastq.gz Illumina HiSeq 2000 /files/ENCFF272WBE/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF070RQL fastq reads ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 1 50 single-ended 2280171920 Richard Myers, HAIB 28479e1b6560ba5e4e411daa156695d3 SRA:SRR5339535 https://www.encodeproject.org/files/ENCFF070RQL/@@download/ENCFF070RQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF737ELZ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF289GAC bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF070RQL, ENCFF807MUK 1820113927 ENCODE Processing Pipeline eaa6edbcfb9dde7124fcd3364d518b32 https://www.encodeproject.org/files/ENCFF289GAC/@@download/ENCFF289GAC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF322CDL bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF779OCL, ENCFF807MUK 1076113461 ENCODE Processing Pipeline f9e88d39a5e19a5f884be992f59a0264 https://www.encodeproject.org/files/ENCFF322CDL/@@download/ENCFF322CDL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF727LMF bigWig signal p-value ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF108FPL, ENCFF322CDL, ENCFF969DYI 787774106 ENCODE Processing Pipeline fb00b3c8e360a953537c490d966444ef https://www.encodeproject.org/files/ENCFF727LMF/@@download/ENCFF727LMF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF047XRR bigWig signal p-value ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF108FPL, ENCFF289GAC, ENCFF969DYI 1143734289 ENCODE Processing Pipeline fe408ac8489ee7d24752b3007ab06fb8 https://www.encodeproject.org/files/ENCFF047XRR/@@download/ENCFF047XRR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF360LRR bigWig fold change over control ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF108FPL, ENCFF322CDL, ENCFF969DYI 742703166 ENCODE Processing Pipeline 27fa76021ee3da086dc56cc5c90098d1 https://www.encodeproject.org/files/ENCFF360LRR/@@download/ENCFF360LRR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF840QDK bigWig signal p-value ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF108FPL, ENCFF289GAC, ENCFF322CDL, ENCFF969DYI 1329541090 ENCODE Processing Pipeline fa1b117172e291922bcf13d95f04fcdc https://www.encodeproject.org/files/ENCFF840QDK/@@download/ENCFF840QDK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF748IWJ bigWig fold change over control ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF108FPL, ENCFF289GAC, ENCFF322CDL, ENCFF969DYI 1353712446 ENCODE Processing Pipeline d4c4be67aaf77e5cbe7e8d1174576f29 https://www.encodeproject.org/files/ENCFF748IWJ/@@download/ENCFF748IWJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF046FFQ bigWig fold change over control ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF108FPL, ENCFF289GAC, ENCFF969DYI 1073346067 ENCODE Processing Pipeline 2f2c68b4a34d404797c0ef32dce93a24 https://www.encodeproject.org/files/ENCFF046FFQ/@@download/ENCFF046FFQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF006WAA bigBed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF467KJE 13350175 ENCODE Processing Pipeline 24310cd6312f7dd1d557ba187c402079 https://www.encodeproject.org/files/ENCFF006WAA/@@download/ENCFF006WAA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF029FHZ bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF108FPL, ENCFF322CDL, ENCFF969DYI 6550732 ENCODE Processing Pipeline 5eb05c692477dab690944ae9c11ba30e https://www.encodeproject.org/files/ENCFF029FHZ/@@download/ENCFF029FHZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF640XEN bigBed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF997CFJ 13397201 ENCODE Processing Pipeline e290dce2942a79d24a8cfd4f61a3e207 https://www.encodeproject.org/files/ENCFF640XEN/@@download/ENCFF640XEN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF642SED bigBed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF029FHZ 13280687 ENCODE Processing Pipeline bae67584a0af6e6e6db4b5c849fedb80 https://www.encodeproject.org/files/ENCFF642SED/@@download/ENCFF642SED.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF467KJE bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF108FPL, ENCFF289GAC, ENCFF322CDL, ENCFF969DYI 7184792 ENCODE Processing Pipeline a9cd10b3dd1e599288116d4e6a43337f https://www.encodeproject.org/files/ENCFF467KJE/@@download/ENCFF467KJE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF569NVH bed narrowPeak conservative idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF029FHZ, ENCFF467KJE, ENCFF997CFJ 456812 ENCODE Processing Pipeline 2e78c2c9365e3cf4b388423b75eb09bd https://www.encodeproject.org/files/ENCFF569NVH/@@download/ENCFF569NVH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF997CFJ bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF108FPL, ENCFF289GAC, ENCFF969DYI 6903752 ENCODE Processing Pipeline 67fb6eeedc4b1740e5e61448727e6b0a https://www.encodeproject.org/files/ENCFF997CFJ/@@download/ENCFF997CFJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF305VNV bigBed narrowPeak conservative idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF569NVH 912338 ENCODE Processing Pipeline d9ac5ada9ca2b8a1860889874b731354 https://www.encodeproject.org/files/ENCFF305VNV/@@download/ENCFF305VNV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF693JHE bed narrowPeak optimal idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF029FHZ, ENCFF467KJE, ENCFF997CFJ 519466 ENCODE Processing Pipeline d6588d01138beb53cf9323ee986d3fd8 https://www.encodeproject.org/files/ENCFF693JHE/@@download/ENCFF693JHE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF315IBC bigBed narrowPeak optimal idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF693JHE 1006002 ENCODE Processing Pipeline b55b2b5fdbfc7b7f9cbe856a3fa916b2 https://www.encodeproject.org/files/ENCFF315IBC/@@download/ENCFF315IBC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF617HTX bam unfiltered alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 50 ENCFF643CGH, ENCFF779OCL 1511073008 ENCODE Processing Pipeline 25b9c4aa299f9bb6c75e7676c2317c69 https://www.encodeproject.org/files/ENCFF617HTX/@@download/ENCFF617HTX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF578WRZ bam unfiltered alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 50 ENCFF070RQL, ENCFF643CGH 2492115450 ENCODE Processing Pipeline 471a420627b33cdc1599e6af7d90dca8 https://www.encodeproject.org/files/ENCFF578WRZ/@@download/ENCFF578WRZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF828CLY bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 50 ENCFF643CGH, ENCFF779OCL 1075842115 ENCODE Processing Pipeline 0af039656b846dbe1def5918648cb422 https://www.encodeproject.org/files/ENCFF828CLY/@@download/ENCFF828CLY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF731XGM bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 50 ENCFF070RQL, ENCFF643CGH 1820272717 ENCODE Processing Pipeline bebd0f9a2c6fb316cab291f32f27e43b https://www.encodeproject.org/files/ENCFF731XGM/@@download/ENCFF731XGM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF586EFV bigWig signal p-value ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF372RRO, ENCFF626VZO, ENCFF828CLY 758534304 ENCODE Processing Pipeline fa9bdd0ba2f579f0a370356655d0be10 https://www.encodeproject.org/files/ENCFF586EFV/@@download/ENCFF586EFV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF103VKF bigWig fold change over control ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF372RRO, ENCFF626VZO, ENCFF828CLY 742379297 ENCODE Processing Pipeline c6c433eee96e19bbbf813a217915efbc https://www.encodeproject.org/files/ENCFF103VKF/@@download/ENCFF103VKF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF125ANK bigWig signal p-value ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF372RRO, ENCFF626VZO, ENCFF731XGM 970639701 ENCODE Processing Pipeline f3e0ba1854316dd7429937bfb808be6b https://www.encodeproject.org/files/ENCFF125ANK/@@download/ENCFF125ANK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF873DTT bigWig signal p-value ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF372RRO, ENCFF626VZO, ENCFF731XGM, ENCFF828CLY 1351889150 ENCODE Processing Pipeline 45868b7ab61cd9c3959b1f9fb6876029 https://www.encodeproject.org/files/ENCFF873DTT/@@download/ENCFF873DTT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF640SYI bigWig fold change over control ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF372RRO, ENCFF626VZO, ENCFF731XGM 1079696921 ENCODE Processing Pipeline 7cb5dc8f53655729a1c8c655d7752fc0 https://www.encodeproject.org/files/ENCFF640SYI/@@download/ENCFF640SYI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF906AXR bigWig fold change over control ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF372RRO, ENCFF626VZO, ENCFF731XGM, ENCFF828CLY 1377223195 ENCODE Processing Pipeline 066c1f2865463be4289fe00c623e4118 https://www.encodeproject.org/files/ENCFF906AXR/@@download/ENCFF906AXR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF856HFW bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF372RRO, ENCFF626VZO, ENCFF731XGM 6764420 ENCODE Processing Pipeline dc06b8a2004597c8f89e7686ecb5dffb https://www.encodeproject.org/files/ENCFF856HFW/@@download/ENCFF856HFW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF462MIM bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF372RRO, ENCFF626VZO, ENCFF731XGM, ENCFF828CLY 7110231 ENCODE Processing Pipeline bc66789c59f7078ec5a2e432dbb4832d https://www.encodeproject.org/files/ENCFF462MIM/@@download/ENCFF462MIM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF050QJU bigBed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF856HFW 13405752 ENCODE Processing Pipeline be6569fd7105b253f4c5f1bfde25f57c https://www.encodeproject.org/files/ENCFF050QJU/@@download/ENCFF050QJU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF698CPN bigBed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF462MIM 13350877 ENCODE Processing Pipeline 584e37e5e9a9a9d01f72d34ebbde0e1a https://www.encodeproject.org/files/ENCFF698CPN/@@download/ENCFF698CPN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF045YGD bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF372RRO, ENCFF626VZO, ENCFF828CLY 6335624 ENCODE Processing Pipeline f82d45054ea6c702e4b8714617b88c42 https://www.encodeproject.org/files/ENCFF045YGD/@@download/ENCFF045YGD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF199EDN bigBed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF045YGD 13278421 ENCODE Processing Pipeline 8b758fdb383fada93b459da52f96b5cd https://www.encodeproject.org/files/ENCFF199EDN/@@download/ENCFF199EDN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF916WZZ bed narrowPeak conservative idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF045YGD, ENCFF419RSJ, ENCFF462MIM, ENCFF856HFW 455826 ENCODE Processing Pipeline e63d511b662bc4e5aac5ce0799e79296 https://www.encodeproject.org/files/ENCFF916WZZ/@@download/ENCFF916WZZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF384JEZ bigBed narrowPeak conservative idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF916WZZ 913059 ENCODE Processing Pipeline efa6764cc44498cf7c57c1149e1b9beb https://www.encodeproject.org/files/ENCFF384JEZ/@@download/ENCFF384JEZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF290UGF bed narrowPeak optimal idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF045YGD, ENCFF419RSJ, ENCFF462MIM, ENCFF856HFW 521548 ENCODE Processing Pipeline 78b6b7231fcf761d614cc774047858ce https://www.encodeproject.org/files/ENCFF290UGF/@@download/ENCFF290UGF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF745MPC bigBed narrowPeak optimal idr thresholded peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF290UGF 1011263 ENCODE Processing Pipeline 4ffb72d30e0cb790f6a7a68b38ae4abc https://www.encodeproject.org/files/ENCFF745MPC/@@download/ENCFF745MPC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF543XYT fastq reads ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 2 100 paired-ended 1 ENCFF184VEG 3717320167 Michael Snyder, Stanford f98da5ec41d2d18a4793a42c55a58880 https://www.encodeproject.org/files/ENCFF543XYT/@@download/ENCFF543XYT.fastq.gz Illumina HiSeq 4000 /files/ENCFF060UJV/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF937YTY fastq reads ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF031DNI 3724117614 Michael Snyder, Stanford 864b6ac41dadb2b5a0c279dce61f45aa https://www.encodeproject.org/files/ENCFF937YTY/@@download/ENCFF937YTY.fastq.gz Illumina HiSeq 4000 /files/ENCFF640ALF/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF184VEG fastq reads ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 2 100 paired-ended 2 ENCFF543XYT 4076774487 Michael Snyder, Stanford 0c022cfd0951da27dcc79ea93951988d https://www.encodeproject.org/files/ENCFF184VEG/@@download/ENCFF184VEG.fastq.gz Illumina HiSeq 4000 /files/ENCFF748BIS/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF031DNI fastq reads ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF937YTY 4089186097 Michael Snyder, Stanford e4a9e4ba2ac3dae21b0f4da8dabef6e3 https://www.encodeproject.org/files/ENCFF031DNI/@@download/ENCFF031DNI.fastq.gz Illumina HiSeq 4000 /files/ENCFF626NFD/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF015FWU bam unfiltered alignments ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 100 ENCFF031DNI, ENCFF184VEG, ENCFF543XYT, ENCFF643CGH, ENCFF937YTY 12532640431 ENCODE Processing Pipeline 6269ad226edda964776d1d411ca1264a https://www.encodeproject.org/files/ENCFF015FWU/@@download/ENCFF015FWU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF876QOT bam unfiltered alignments ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 100 ENCFF031DNI, ENCFF184VEG, ENCFF543XYT, ENCFF807MUK, ENCFF937YTY 12557172446 ENCODE Processing Pipeline fe781e90e6d58bd3ff5b70c825caf1b7 https://www.encodeproject.org/files/ENCFF876QOT/@@download/ENCFF876QOT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF468AEG bam alignments ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 100 ENCFF031DNI, ENCFF184VEG, ENCFF543XYT, ENCFF807MUK, ENCFF937YTY 4530274205 ENCODE Processing Pipeline c1c4e3224b43741eae8cd4d3232841b9 https://www.encodeproject.org/files/ENCFF468AEG/@@download/ENCFF468AEG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF970KZJ bam alignments ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 100 ENCFF031DNI, ENCFF184VEG, ENCFF543XYT, ENCFF643CGH, ENCFF937YTY 4536317454 ENCODE Processing Pipeline 27fe38bb2d46eacea1967af61ec54edd https://www.encodeproject.org/files/ENCFF970KZJ/@@download/ENCFF970KZJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF513FTL bam unfiltered alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 100 ENCFF311SGU, ENCFF647KQT, ENCFF807MUK 6519718180 ENCODE Processing Pipeline 48a9dfeace238db3ed8c932908de3c6c https://www.encodeproject.org/files/ENCFF513FTL/@@download/ENCFF513FTL.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF218BQS bam unfiltered alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 100 ENCFF497JNW, ENCFF807MUK, ENCFF842CFV 4315756218 ENCODE Processing Pipeline 05ab44eadd7a838753da70d740f01099 https://www.encodeproject.org/files/ENCFF218BQS/@@download/ENCFF218BQS.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF647KQT fastq reads ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF311SGU 3427957599 Michael Snyder, Stanford 5d1daef7b9628b1ab863256a80f6ee54 SRA:SRR5111965 https://www.encodeproject.org/files/ENCFF647KQT/@@download/ENCFF647KQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF224SOH/, /files/ENCFF451VBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF497JNW fastq reads ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF842CFV 2144210843 Michael Snyder, Stanford a940f16e740bcbc58dc4d0193b5a68c2 SRA:SRR5111964 https://www.encodeproject.org/files/ENCFF497JNW/@@download/ENCFF497JNW.fastq.gz Illumina HiSeq 2000 /files/ENCFF224SOH/, /files/ENCFF451VBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF311SGU fastq reads ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF647KQT 3571074922 Michael Snyder, Stanford 9d80f36e0b2feef46cb63d404fa420c7 SRA:SRR5111965 https://www.encodeproject.org/files/ENCFF311SGU/@@download/ENCFF311SGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF224SOH/, /files/ENCFF451VBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF842CFV fastq reads ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF497JNW 2204204749 Michael Snyder, Stanford bb91c59376108bf8a8aac0f81b6d6036 SRA:SRR5111964 https://www.encodeproject.org/files/ENCFF842CFV/@@download/ENCFF842CFV.fastq.gz Illumina HiSeq 2000 /files/ENCFF224SOH/, /files/ENCFF451VBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF228QPG bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF311SGU, ENCFF647KQT, ENCFF807MUK 3546147050 ENCODE Processing Pipeline f2b0dc53fe26ea29c9afbb0e85148afa https://www.encodeproject.org/files/ENCFF228QPG/@@download/ENCFF228QPG.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF102OVJ bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF497JNW, ENCFF807MUK, ENCFF842CFV 2951119985 ENCODE Processing Pipeline f31225be3421069ea94ed7b80a247634 https://www.encodeproject.org/files/ENCFF102OVJ/@@download/ENCFF102OVJ.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF315EIP bigWig fold change over control ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF228QPG, ENCFF319TDX 858867888 ENCODE Processing Pipeline 50db1c42f72ff774e582ffe96352de71 https://www.encodeproject.org/files/ENCFF315EIP/@@download/ENCFF315EIP.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF184UAJ bigWig signal p-value ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF102OVJ, ENCFF319TDX 611130735 ENCODE Processing Pipeline d668c0d49adc41167e667233369e6ff9 https://www.encodeproject.org/files/ENCFF184UAJ/@@download/ENCFF184UAJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF874UJI bigWig signal p-value ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF228QPG, ENCFF319TDX 848346209 ENCODE Processing Pipeline b0e340fef96306689ffeb260bea83598 https://www.encodeproject.org/files/ENCFF874UJI/@@download/ENCFF874UJI.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF281ART bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF228QPG, ENCFF319TDX 7026067 ENCODE Processing Pipeline 5490a96c5eee9cf6b27d1b2931a9ab2e https://www.encodeproject.org/files/ENCFF281ART/@@download/ENCFF281ART.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF435TZX bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF102OVJ, ENCFF228QPG, ENCFF319TDX 7276549 ENCODE Processing Pipeline e0a6d3e9fb1237aa90a5a3577bbb95dd https://www.encodeproject.org/files/ENCFF435TZX/@@download/ENCFF435TZX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF102TIK bigWig fold change over control ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF102OVJ, ENCFF319TDX 732770692 ENCODE Processing Pipeline ada15b06f35f10f7f6982205d636dcbc https://www.encodeproject.org/files/ENCFF102TIK/@@download/ENCFF102TIK.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF175VPS bigWig fold change over control ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF102OVJ, ENCFF228QPG, ENCFF319TDX 1182284809 ENCODE Processing Pipeline 7b7d596bef40ad6e76d715ea7af268b9 https://www.encodeproject.org/files/ENCFF175VPS/@@download/ENCFF175VPS.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF228PSB bed narrowPeak optimal idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF281ART, ENCFF303DKR, ENCFF435TZX 799671 ENCODE Processing Pipeline 054f28f450d6d4e35a9993fce120ae4c https://www.encodeproject.org/files/ENCFF228PSB/@@download/ENCFF228PSB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF817YQL bigBed narrowPeak optimal idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF228PSB 1764186 ENCODE Processing Pipeline 47b2b96adb42a7bfd22aca7c2d4e2d97 https://www.encodeproject.org/files/ENCFF817YQL/@@download/ENCFF817YQL.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF185HDZ bigWig signal p-value ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF102OVJ, ENCFF228QPG, ENCFF319TDX 836357645 ENCODE Processing Pipeline 10081ff71ad4632d89ce871889b09dea https://www.encodeproject.org/files/ENCFF185HDZ/@@download/ENCFF185HDZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF556ULA bigBed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF435TZX 13005686 ENCODE Processing Pipeline 01e8554bdf8026007c56753eb24e2d90 https://www.encodeproject.org/files/ENCFF556ULA/@@download/ENCFF556ULA.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF883RXL bigBed narrowPeak conservative idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF820BLL 1743347 ENCODE Processing Pipeline 878fd6d524d335696210bceebed79d13 https://www.encodeproject.org/files/ENCFF883RXL/@@download/ENCFF883RXL.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF303DKR bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF102OVJ, ENCFF319TDX 6737397 ENCODE Processing Pipeline f3f8b4ff33716b5a73ff5585e6f524b9 https://www.encodeproject.org/files/ENCFF303DKR/@@download/ENCFF303DKR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF820BLL bed narrowPeak conservative idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF281ART, ENCFF303DKR, ENCFF435TZX 792908 ENCODE Processing Pipeline 98698eff66ac0dfe6cd233f833c610fb https://www.encodeproject.org/files/ENCFF820BLL/@@download/ENCFF820BLL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF638XGI bigBed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF281ART 12941666 ENCODE Processing Pipeline 8bfc37a16994bd233bd6afbe45ebb406 https://www.encodeproject.org/files/ENCFF638XGI/@@download/ENCFF638XGI.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF992ZDG bigBed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF303DKR 13193183 ENCODE Processing Pipeline 3e9b8239f89d4b2d7ee7ae667f4bd519 https://www.encodeproject.org/files/ENCFF992ZDG/@@download/ENCFF992ZDG.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF192UGS bam unfiltered alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 100 ENCFF497JNW, ENCFF643CGH, ENCFF842CFV 4317691503 ENCODE Processing Pipeline b7ec315ce81c8e9be5c7e8658ff059c9 https://www.encodeproject.org/files/ENCFF192UGS/@@download/ENCFF192UGS.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF631UIG bam unfiltered alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 100 ENCFF311SGU, ENCFF643CGH, ENCFF647KQT 6519152362 ENCODE Processing Pipeline 22bd892c067c27b004be3a453408915e https://www.encodeproject.org/files/ENCFF631UIG/@@download/ENCFF631UIG.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF938FQC bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 100 ENCFF497JNW, ENCFF643CGH, ENCFF842CFV 2952154493 ENCODE Processing Pipeline b3f5828305f72d5a0bf313bc402978ef https://www.encodeproject.org/files/ENCFF938FQC/@@download/ENCFF938FQC.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF327XSI bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 100 ENCFF311SGU, ENCFF643CGH, ENCFF647KQT 3547651072 ENCODE Processing Pipeline 4aeb2bba2f62dfbdba6339f83e7c98b3 https://www.encodeproject.org/files/ENCFF327XSI/@@download/ENCFF327XSI.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF742PWS bigWig signal p-value ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF327XSI, ENCFF394JQH 839814285 ENCODE Processing Pipeline 5ede2b4633230244198648b86b7afff2 https://www.encodeproject.org/files/ENCFF742PWS/@@download/ENCFF742PWS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF946HUI bigWig signal p-value ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF394JQH, ENCFF938FQC 686129407 ENCODE Processing Pipeline 3352e25cf06e8ac800b74c125ae23e5c https://www.encodeproject.org/files/ENCFF946HUI/@@download/ENCFF946HUI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF587RUL bigWig signal p-value ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF327XSI, ENCFF394JQH, ENCFF938FQC 840693060 ENCODE Processing Pipeline 7653ec8df6295f5f9bc8139835bc2663 https://www.encodeproject.org/files/ENCFF587RUL/@@download/ENCFF587RUL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF756NHY bigWig fold change over control ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF327XSI, ENCFF394JQH 855639823 ENCODE Processing Pipeline a118fcdfd66b07d164b92683cc9eb17d https://www.encodeproject.org/files/ENCFF756NHY/@@download/ENCFF756NHY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF631QGM bigWig fold change over control ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF394JQH, ENCFF938FQC 733844601 ENCODE Processing Pipeline dc7c5eef6856b1dcdb558d784c82abc4 https://www.encodeproject.org/files/ENCFF631QGM/@@download/ENCFF631QGM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF894JDF bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF394JQH, ENCFF938FQC 6659004 ENCODE Processing Pipeline af0b364522bac11653f5e232ec27a7d6 https://www.encodeproject.org/files/ENCFF894JDF/@@download/ENCFF894JDF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF265AHI bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF327XSI, ENCFF394JQH, ENCFF938FQC 7216997 ENCODE Processing Pipeline 9bfdb9e00388daacc7d9330060983115 https://www.encodeproject.org/files/ENCFF265AHI/@@download/ENCFF265AHI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF021ELR bigWig fold change over control ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF327XSI, ENCFF394JQH, ENCFF938FQC 1223224453 ENCODE Processing Pipeline b759280c91b70cddfe9184494ac913d2 https://www.encodeproject.org/files/ENCFF021ELR/@@download/ENCFF021ELR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF447IHS bigBed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF492ZNK 12924603 ENCODE Processing Pipeline 2ad3a565036b2920f90bf327451ff8cd https://www.encodeproject.org/files/ENCFF447IHS/@@download/ENCFF447IHS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF321TZS bigBed narrowPeak conservative idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF605TNJ 1735196 ENCODE Processing Pipeline a0c5a1c1b5e90a3db9727179a0f99647 https://www.encodeproject.org/files/ENCFF321TZS/@@download/ENCFF321TZS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF711DLC bigBed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF894JDF 13233880 ENCODE Processing Pipeline f3f067ca246682a324658c587b1c0c9d https://www.encodeproject.org/files/ENCFF711DLC/@@download/ENCFF711DLC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF492ZNK bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF327XSI, ENCFF394JQH 6947208 ENCODE Processing Pipeline 39ee85589bc2498b59bd34e10c3e0d93 https://www.encodeproject.org/files/ENCFF492ZNK/@@download/ENCFF492ZNK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF419WTZ bed narrowPeak optimal idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF265AHI, ENCFF419RSJ, ENCFF492ZNK, ENCFF894JDF 795933 ENCODE Processing Pipeline db80ad0dec4830532fc99a3350ab1b37 https://www.encodeproject.org/files/ENCFF419WTZ/@@download/ENCFF419WTZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF680EQH bigBed narrowPeak optimal idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419WTZ 1423588 ENCODE Processing Pipeline 0fabff031d0a2f851411d922ed6f54ac https://www.encodeproject.org/files/ENCFF680EQH/@@download/ENCFF680EQH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF742CLG bigBed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF265AHI 12984300 ENCODE Processing Pipeline 3ed5eec29281ea9dac4c8e941e8173fc https://www.encodeproject.org/files/ENCFF742CLG/@@download/ENCFF742CLG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF605TNJ bed narrowPeak conservative idr thresholded peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF265AHI, ENCFF419RSJ, ENCFF492ZNK, ENCFF894JDF 784161 ENCODE Processing Pipeline ed5636e4b4934f3ba5a5caf3db0b27ec https://www.encodeproject.org/files/ENCFF605TNJ/@@download/ENCFF605TNJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF241DJP bam unfiltered alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 100 ENCFF044YZK, ENCFF807MUK, ENCFF829JEX 4362051141 ENCODE Processing Pipeline c4b201ed95f9f60b3706b409339deb96 https://www.encodeproject.org/files/ENCFF241DJP/@@download/ENCFF241DJP.bam hg19 released low read depth ENCFF359FMP bam unfiltered alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 100 ENCFF250LUM, ENCFF307RHE, ENCFF807MUK 4207889241 ENCODE Processing Pipeline 49045501fe3a97bc9337cb89eddda979 https://www.encodeproject.org/files/ENCFF359FMP/@@download/ENCFF359FMP.bam hg19 released low read depth ENCFF044YZK fastq reads ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF829JEX 1986436805 Michael Snyder, Stanford 33d68680ae58cdee6b37cf87f8b971b3 SRA:SRR5112127 https://www.encodeproject.org/files/ENCFF044YZK/@@download/ENCFF044YZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF307RHE fastq reads ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF250LUM 1910691367 Michael Snyder, Stanford 3683a0b65cf45c89e6184fd0b7ce269e SRA:SRR5112128 https://www.encodeproject.org/files/ENCFF307RHE/@@download/ENCFF307RHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF829JEX fastq reads ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF044YZK 1936874967 Michael Snyder, Stanford 4b3e73aa485c45ad4e189063916022b4 SRA:SRR5112127 https://www.encodeproject.org/files/ENCFF829JEX/@@download/ENCFF829JEX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF250LUM fastq reads ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF307RHE 1946787816 Michael Snyder, Stanford e0df5ebb1950b7a634c33a9e34ebdb7a SRA:SRR5112128 https://www.encodeproject.org/files/ENCFF250LUM/@@download/ENCFF250LUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF050ZWR bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 100 ENCFF044YZK, ENCFF807MUK, ENCFF829JEX 3728434340 ENCODE Processing Pipeline c39c98056f4cdfbe52e6857e02e7fc60 https://www.encodeproject.org/files/ENCFF050ZWR/@@download/ENCFF050ZWR.bam hg19 released low read depth ENCFF842SKP bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 100 ENCFF250LUM, ENCFF307RHE, ENCFF807MUK 3471689816 ENCODE Processing Pipeline 7173a0160ccece05ef503cf77ec5c008 https://www.encodeproject.org/files/ENCFF842SKP/@@download/ENCFF842SKP.bam hg19 released low read depth ENCFF579BXC bigWig signal p-value ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF050ZWR, ENCFF581ZJL 1093167317 ENCODE Processing Pipeline 55784c5ecf1095e661c3f29a3f9eed57 https://www.encodeproject.org/files/ENCFF579BXC/@@download/ENCFF579BXC.bigWig hg19 released low read depth ENCFF430IVD bigWig signal p-value ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF842SKP 1092454100 ENCODE Processing Pipeline 05db63176f1c3bc2305d0d52d972e103 https://www.encodeproject.org/files/ENCFF430IVD/@@download/ENCFF430IVD.bigWig hg19 released low read depth ENCFF388GQF bigWig signal p-value ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF050ZWR, ENCFF051LWI, ENCFF581ZJL, ENCFF842SKP 1584356952 ENCODE Processing Pipeline 0b814f968e4e5a4791c77005529a9aca https://www.encodeproject.org/files/ENCFF388GQF/@@download/ENCFF388GQF.bigWig hg19 released low read depth ENCFF997JCO bigWig fold change over control ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF050ZWR, ENCFF581ZJL 1111079811 ENCODE Processing Pipeline 429cbbb16dc26a4695fe7c91e8a0e083 https://www.encodeproject.org/files/ENCFF997JCO/@@download/ENCFF997JCO.bigWig hg19 released low read depth ENCFF300PEI bigWig fold change over control ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF842SKP 1000065434 ENCODE Processing Pipeline 2ffc8358911ec5e7e05a8a608d8ad033 https://www.encodeproject.org/files/ENCFF300PEI/@@download/ENCFF300PEI.bigWig hg19 released low read depth ENCFF847TGB bigWig fold change over control ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF050ZWR, ENCFF051LWI, ENCFF581ZJL, ENCFF842SKP 1994409530 ENCODE Processing Pipeline 3f129cb9e9e8b2b368febb4cea9c0ea6 https://www.encodeproject.org/files/ENCFF847TGB/@@download/ENCFF847TGB.bigWig hg19 released low read depth ENCFF696NDZ bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF050ZWR, ENCFF581ZJL 6922724 ENCODE Processing Pipeline cdeff180b250f2f1f3a024f0da98ba52 https://www.encodeproject.org/files/ENCFF696NDZ/@@download/ENCFF696NDZ.bed.gz hg19 released low read depth ENCFF710KZS bigBed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF232HEV 13029235 ENCODE Processing Pipeline 5f9465a6de88d8433c1bb70b26d1ac7d https://www.encodeproject.org/files/ENCFF710KZS/@@download/ENCFF710KZS.bigBed hg19 released low read depth ENCFF232HEV bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF842SKP 6884646 ENCODE Processing Pipeline 4416b7547a5b229856a3940d5b90c0f9 https://www.encodeproject.org/files/ENCFF232HEV/@@download/ENCFF232HEV.bed.gz hg19 released low read depth ENCFF813HMN bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF050ZWR, ENCFF051LWI, ENCFF581ZJL, ENCFF842SKP 7260038 ENCODE Processing Pipeline 708edd54fcc71c29c1c51c1f0d9321f9 https://www.encodeproject.org/files/ENCFF813HMN/@@download/ENCFF813HMN.bed.gz hg19 released low read depth ENCFF432CNX bigBed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF696NDZ 13103223 ENCODE Processing Pipeline 6f4e0c38d4b7b168804daa65609beb3a https://www.encodeproject.org/files/ENCFF432CNX/@@download/ENCFF432CNX.bigBed hg19 released low read depth ENCFF338OLR bigBed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF813HMN 12856963 ENCODE Processing Pipeline 8aaeb0408022b8cca7e0eace853e810b https://www.encodeproject.org/files/ENCFF338OLR/@@download/ENCFF338OLR.bigBed hg19 released low read depth ENCFF046RKA bam unfiltered alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 100 ENCFF250LUM, ENCFF307RHE, ENCFF643CGH 4211050316 ENCODE Processing Pipeline 6a60e6bad357dae40b57ee7414b3a782 https://www.encodeproject.org/files/ENCFF046RKA/@@download/ENCFF046RKA.bam GRCh38 released low read depth ENCFF571LYC bam unfiltered alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 100 ENCFF044YZK, ENCFF643CGH, ENCFF829JEX 4366712101 ENCODE Processing Pipeline fa55dfa5652c4aca27e4dc059b7eb907 https://www.encodeproject.org/files/ENCFF571LYC/@@download/ENCFF571LYC.bam GRCh38 released low read depth ENCFF015UIX bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 100 ENCFF250LUM, ENCFF307RHE, ENCFF643CGH 3472577277 ENCODE Processing Pipeline 9f6ac174c3575ab5906bc9d2f048e4df https://www.encodeproject.org/files/ENCFF015UIX/@@download/ENCFF015UIX.bam GRCh38 released low read depth ENCFF587HZM bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 100 ENCFF044YZK, ENCFF643CGH, ENCFF829JEX 3729985722 ENCODE Processing Pipeline 1f45eb4a678d29aa3b2a3d32e045d1e4 https://www.encodeproject.org/files/ENCFF587HZM/@@download/ENCFF587HZM.bam GRCh38 released low read depth ENCFF447ERS bigWig signal p-value ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF587HZM, ENCFF910IKB 1108512186 ENCODE Processing Pipeline fbebc67b199fdeca4d1e93a1dbafb9bc https://www.encodeproject.org/files/ENCFF447ERS/@@download/ENCFF447ERS.bigWig GRCh38 released low read depth ENCFF157LID bigWig signal p-value ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF015UIX, ENCFF227IZS 865571542 ENCODE Processing Pipeline be0d086c8ee84c9809ce9ef4bc49716f https://www.encodeproject.org/files/ENCFF157LID/@@download/ENCFF157LID.bigWig GRCh38 released low read depth ENCFF221QSU bigWig signal p-value ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF015UIX, ENCFF227IZS, ENCFF587HZM, ENCFF910IKB 1734596597 ENCODE Processing Pipeline 79f5a69d16c6eddf2bdd633d9a748355 https://www.encodeproject.org/files/ENCFF221QSU/@@download/ENCFF221QSU.bigWig GRCh38 released low read depth ENCFF063FSY bigWig fold change over control ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF587HZM, ENCFF910IKB 1116349413 ENCODE Processing Pipeline 21e8842edc6ab0ba16a3c3dc7eb6c546 https://www.encodeproject.org/files/ENCFF063FSY/@@download/ENCFF063FSY.bigWig GRCh38 released low read depth ENCFF735ZOU bigWig fold change over control ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF015UIX, ENCFF227IZS 1002621074 ENCODE Processing Pipeline a961ce86496112a685f2b5d98ce3bc18 https://www.encodeproject.org/files/ENCFF735ZOU/@@download/ENCFF735ZOU.bigWig GRCh38 released low read depth ENCFF394UYP bigWig fold change over control ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF015UIX, ENCFF227IZS, ENCFF587HZM, ENCFF910IKB 2012243395 ENCODE Processing Pipeline 8b0e5daa60a0b212c97b8b73651ebf48 https://www.encodeproject.org/files/ENCFF394UYP/@@download/ENCFF394UYP.bigWig GRCh38 released low read depth ENCFF243MBZ bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF015UIX, ENCFF227IZS 6805431 ENCODE Processing Pipeline 53cb9d06b5f42fedbf17fb42e2129e74 https://www.encodeproject.org/files/ENCFF243MBZ/@@download/ENCFF243MBZ.bed.gz GRCh38 released low read depth ENCFF831GNR bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF587HZM, ENCFF910IKB 6823843 ENCODE Processing Pipeline 4af38959390946dc6019fbd98ba68bc3 https://www.encodeproject.org/files/ENCFF831GNR/@@download/ENCFF831GNR.bed.gz GRCh38 released low read depth ENCFF084KSI bigBed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF831GNR 13110549 ENCODE Processing Pipeline f808b10786af114b5b1a75483f95e187 https://www.encodeproject.org/files/ENCFF084KSI/@@download/ENCFF084KSI.bigBed GRCh38 released low read depth ENCFF057PDR bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF015UIX, ENCFF227IZS, ENCFF587HZM, ENCFF910IKB 7255373 ENCODE Processing Pipeline cc1aa6c8daf96c178ffdaa07f9dfeec4 https://www.encodeproject.org/files/ENCFF057PDR/@@download/ENCFF057PDR.bed.gz GRCh38 released low read depth ENCFF770VPK bigBed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF243MBZ 13034875 ENCODE Processing Pipeline 2c354d57c4554ce11430171b54058797 https://www.encodeproject.org/files/ENCFF770VPK/@@download/ENCFF770VPK.bigBed GRCh38 released low read depth ENCFF226YIS bigBed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF057PDR 12862884 ENCODE Processing Pipeline 0e06c8a806b7a07c94284cf6379a31cf https://www.encodeproject.org/files/ENCFF226YIS/@@download/ENCFF226YIS.bigBed GRCh38 released low read depth ENCFF393TSA bigBed narrowPeak conservative idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF966CGZ 285354 ENCODE Processing Pipeline 688ea10dee7e5f5d0abb0013852655f5 https://www.encodeproject.org/files/ENCFF393TSA/@@download/ENCFF393TSA.bigBed GRCh38 released low read depth ENCFF966CGZ bed narrowPeak conservative idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF057PDR, ENCFF243MBZ, ENCFF419RSJ, ENCFF831GNR 101654 ENCODE Processing Pipeline 850bc8018e9d1f71532a78f51b18e468 https://www.encodeproject.org/files/ENCFF966CGZ/@@download/ENCFF966CGZ.bed.gz GRCh38 released low read depth ENCFF349MSP bed narrowPeak optimal idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF057PDR, ENCFF243MBZ, ENCFF419RSJ, ENCFF831GNR 164122 ENCODE Processing Pipeline dfb29d14928060c7b12347bbf74fedb5 https://www.encodeproject.org/files/ENCFF349MSP/@@download/ENCFF349MSP.bed.gz GRCh38 released low read depth ENCFF603TYC bigBed narrowPeak optimal idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF349MSP 396693 ENCODE Processing Pipeline 336b0211b59298c0e08c5b3898c587d2 https://www.encodeproject.org/files/ENCFF603TYC/@@download/ENCFF603TYC.bigBed GRCh38 released low read depth ENCFF539WLH bed narrowPeak optimal idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF232HEV, ENCFF696NDZ, ENCFF813HMN 128344 ENCODE Processing Pipeline 2a1c65eb617ccef1f2444da1282bf8b0 https://www.encodeproject.org/files/ENCFF539WLH/@@download/ENCFF539WLH.bed.gz hg19 released low read depth ENCFF697DZC bed narrowPeak conservative idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF232HEV, ENCFF696NDZ, ENCFF813HMN 81053 ENCODE Processing Pipeline db0b6abbe2913ccc712c01c3aaa674ae https://www.encodeproject.org/files/ENCFF697DZC/@@download/ENCFF697DZC.bed.gz hg19 released low read depth ENCFF954GSM bigBed narrowPeak conservative idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF697DZC 214781 ENCODE Processing Pipeline 3be538bbda0d8ef1e23ddbd5bc35c4a7 https://www.encodeproject.org/files/ENCFF954GSM/@@download/ENCFF954GSM.bigBed hg19 released low read depth ENCFF369QLE bigBed narrowPeak optimal idr thresholded peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF539WLH 285189 ENCODE Processing Pipeline ab59fe1920baae048851de213a8ddcff https://www.encodeproject.org/files/ENCFF369QLE/@@download/ENCFF369QLE.bigBed hg19 released low read depth ENCFF002EWY fastq reads ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 1 36 single-ended 860476529 Michael Snyder, Stanford 8be8e80b1daf019d465d60a8a2bc8ed7 https://www.encodeproject.org/files/ENCFF002EWY/@@download/ENCFF002EWY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002EXD/ released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF002EXC fastq reads ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 1 36 single-ended 919600750 Michael Snyder, Stanford 2dccf53f3683abda90c4d8be5a2e29f4 https://www.encodeproject.org/files/ENCFF002EXC/@@download/ENCFF002EXC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002EXA/ released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF915HOY bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EXC, ENCFF643CGH 920463653 ENCODE Processing Pipeline 9d1d10a512bcaefeacb251f0b3473659 https://www.encodeproject.org/files/ENCFF915HOY/@@download/ENCFF915HOY.bam GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF825RNP bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EXC, ENCFF807MUK 920863155 ENCODE Processing Pipeline f32a77be794c4c1541c41fc7107215d8 https://www.encodeproject.org/files/ENCFF825RNP/@@download/ENCFF825RNP.bam hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF257TLH bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EWY, ENCFF807MUK 829347407 ENCODE Processing Pipeline f9841a987db4555c5ed22d13440ac6b9 https://www.encodeproject.org/files/ENCFF257TLH/@@download/ENCFF257TLH.bam hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF283OMH bam unfiltered alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EXC, ENCFF643CGH 1326553037 ENCODE Processing Pipeline e61b05967adeae5417bd5e4431a99d20 https://www.encodeproject.org/files/ENCFF283OMH/@@download/ENCFF283OMH.bam GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF170SUW bam unfiltered alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EXC, ENCFF807MUK 1320040099 ENCODE Processing Pipeline 955f0a4f2092f9bcc22dff2d37ed635d https://www.encodeproject.org/files/ENCFF170SUW/@@download/ENCFF170SUW.bam hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF396XHE bam unfiltered alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EWY, ENCFF807MUK 1223974994 ENCODE Processing Pipeline 07c9dedbee1cf99e1846fbeb607571c4 https://www.encodeproject.org/files/ENCFF396XHE/@@download/ENCFF396XHE.bam hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF245EJX bam unfiltered alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EWY, ENCFF643CGH 1230641268 ENCODE Processing Pipeline 3cf72fcea6643d8ede8babf9fd9d8403 https://www.encodeproject.org/files/ENCFF245EJX/@@download/ENCFF245EJX.bam GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF529HAI bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EWY, ENCFF643CGH 828956493 ENCODE Processing Pipeline 2b8324193348f06cb6af2ebb487bb4bd https://www.encodeproject.org/files/ENCFF529HAI/@@download/ENCFF529HAI.bam GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF510BIW bigWig fold change over control ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 542433376 ENCODE Processing Pipeline 2eabec3a8c4b0ab6af03ffad9f63ac30 https://www.encodeproject.org/files/ENCFF510BIW/@@download/ENCFF510BIW.bigWig hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF859DNJ bigWig signal p-value ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 651126031 ENCODE Processing Pipeline cd154933f29105b63cb7105934421e16 https://www.encodeproject.org/files/ENCFF859DNJ/@@download/ENCFF859DNJ.bigWig hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF064LSJ bigWig signal p-value ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 878219631 ENCODE Processing Pipeline e65767572b934ed08ca954c3f4958fe5 https://www.encodeproject.org/files/ENCFF064LSJ/@@download/ENCFF064LSJ.bigWig hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF705LKP bigBed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF654DFC 11592995 ENCODE Processing Pipeline 409f55858f1dac1a4933ba91cfb09c0e https://www.encodeproject.org/files/ENCFF705LKP/@@download/ENCFF705LKP.bigBed hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF092FWZ bigBed narrowPeak conservative idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF857VSJ 718732 ENCODE Processing Pipeline f4e56a2c34a3ed55a27d416f46e7a8b6 https://www.encodeproject.org/files/ENCFF092FWZ/@@download/ENCFF092FWZ.bigBed hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF150TRV bigWig signal p-value ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS 614430049 ENCODE Processing Pipeline 9bf7f82075cb628b161d81025afe3f68 https://www.encodeproject.org/files/ENCFF150TRV/@@download/ENCFF150TRV.bigWig hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF556OAI bigWig fold change over control ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS 510367588 ENCODE Processing Pipeline fb70eaedf9d63a119e5b694c719923c1 https://www.encodeproject.org/files/ENCFF556OAI/@@download/ENCFF556OAI.bigWig hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF707KYS bigBed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF501YCY 11130888 ENCODE Processing Pipeline 1b310a77bd655caeaf29f16ddbaac6cf https://www.encodeproject.org/files/ENCFF707KYS/@@download/ENCFF707KYS.bigBed hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF502LYH bigWig fold change over control ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 853486402 ENCODE Processing Pipeline 0b9e772761d17cd9acb4271a6507d5aa https://www.encodeproject.org/files/ENCFF502LYH/@@download/ENCFF502LYH.bigWig hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF800RTH bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 4753523 ENCODE Processing Pipeline 0a46fef5ed8a49e0b755e7e6483fce5c https://www.encodeproject.org/files/ENCFF800RTH/@@download/ENCFF800RTH.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF501YCY bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS 4563885 ENCODE Processing Pipeline 1f94db6c1eb1a51247b39e7ce1f0efb8 https://www.encodeproject.org/files/ENCFF501YCY/@@download/ENCFF501YCY.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF654DFC bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 5289380 ENCODE Processing Pipeline 9a65821896b2edbd1d385b8d938aedd1 https://www.encodeproject.org/files/ENCFF654DFC/@@download/ENCFF654DFC.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF962WIX bigBed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF800RTH 11230042 ENCODE Processing Pipeline 61ad9ef53f02b1f0f4a743b3398676b0 https://www.encodeproject.org/files/ENCFF962WIX/@@download/ENCFF962WIX.bigBed hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF857VSJ bed narrowPeak conservative idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF501YCY, ENCFF654DFC, ENCFF800RTH 373126 ENCODE Processing Pipeline 405c8b4aadee7e94db3a0c0e39320c4c https://www.encodeproject.org/files/ENCFF857VSJ/@@download/ENCFF857VSJ.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF233DOW bed narrowPeak optimal idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF501YCY, ENCFF654DFC, ENCFF800RTH 385302 ENCODE Processing Pipeline 4a40fd4a80e95f2166f4d6e2694c136a https://www.encodeproject.org/files/ENCFF233DOW/@@download/ENCFF233DOW.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF019EGA bigBed narrowPeak optimal idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF233DOW 736644 ENCODE Processing Pipeline e9e8bab163991da0a3e363ba42e54518 https://www.encodeproject.org/files/ENCFF019EGA/@@download/ENCFF019EGA.bigBed hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF134AVY bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF915HOY 4751834 ENCODE Processing Pipeline 407bebea4508526ad53f5557561bbca2 https://www.encodeproject.org/files/ENCFF134AVY/@@download/ENCFF134AVY.bed.gz GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF937XHR bigWig fold change over control ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF529HAI 514228903 ENCODE Processing Pipeline 1bf7cddba09e817bba6460cb9165f765 https://www.encodeproject.org/files/ENCFF937XHR/@@download/ENCFF937XHR.bigWig GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF303ZNL bigWig fold change over control ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF529HAI, ENCFF915HOY 868539798 ENCODE Processing Pipeline dd9a7d07b67905ee794b216b9c87f876 https://www.encodeproject.org/files/ENCFF303ZNL/@@download/ENCFF303ZNL.bigWig GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF515HXP bigWig signal p-value ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF915HOY 650089434 ENCODE Processing Pipeline 7573e18d29ab8b144dd9e6c3b5905c60 https://www.encodeproject.org/files/ENCFF515HXP/@@download/ENCFF515HXP.bigWig GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF315BSV bed narrowPeak optimal idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF134AVY, ENCFF318YTP, ENCFF419RSJ, ENCFF429VMY 385686 ENCODE Processing Pipeline cdfd078d834d30771f5780e05d64eba6 https://www.encodeproject.org/files/ENCFF315BSV/@@download/ENCFF315BSV.bed.gz GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF259FDP bigWig signal p-value ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF529HAI, ENCFF915HOY 880715074 ENCODE Processing Pipeline cbec431a8f7457328e8cd60c3f0fa4fd https://www.encodeproject.org/files/ENCFF259FDP/@@download/ENCFF259FDP.bigWig GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF446BVC bigBed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF318YTP 11149100 ENCODE Processing Pipeline d8cc4767b9bfcd94f715eabaad39203e https://www.encodeproject.org/files/ENCFF446BVC/@@download/ENCFF446BVC.bigBed GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF670WHV bigBed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF429VMY 11596597 ENCODE Processing Pipeline a52094c219c6524856eabbda8531afc4 https://www.encodeproject.org/files/ENCFF670WHV/@@download/ENCFF670WHV.bigBed GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF318YTP bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF529HAI 4553525 ENCODE Processing Pipeline ba4e3c34ade3213ef94d16abd10c6a5e https://www.encodeproject.org/files/ENCFF318YTP/@@download/ENCFF318YTP.bed.gz GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF429VMY bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF529HAI, ENCFF915HOY 5289591 ENCODE Processing Pipeline a57a4056427e0f1d8324c2e952462a21 https://www.encodeproject.org/files/ENCFF429VMY/@@download/ENCFF429VMY.bed.gz GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF661TXD bigWig fold change over control ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF915HOY 546476761 ENCODE Processing Pipeline beeb62f4bd911b4494d47368b6635ca5 https://www.encodeproject.org/files/ENCFF661TXD/@@download/ENCFF661TXD.bigWig GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF723KGL bigWig signal p-value ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF529HAI 556936121 ENCODE Processing Pipeline 0e50a6094070d37f9eb238d136067a47 https://www.encodeproject.org/files/ENCFF723KGL/@@download/ENCFF723KGL.bigWig GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF313GTK bigBed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF134AVY 11235049 ENCODE Processing Pipeline 6773d8ef7f13ead0d25402805282099d https://www.encodeproject.org/files/ENCFF313GTK/@@download/ENCFF313GTK.bigBed GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF065LHK bigBed narrowPeak optimal idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF315BSV 736760 ENCODE Processing Pipeline ef707fac6f7f190818b508c51546e147 https://www.encodeproject.org/files/ENCFF065LHK/@@download/ENCFF065LHK.bigBed GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF500XIG bed narrowPeak conservative idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF134AVY, ENCFF318YTP, ENCFF419RSJ, ENCFF429VMY 371229 ENCODE Processing Pipeline 78ac6a643ad2f46c97c3361b92d773d9 https://www.encodeproject.org/files/ENCFF500XIG/@@download/ENCFF500XIG.bed.gz GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF108EMH bigBed narrowPeak conservative idr thresholded peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF500XIG 716061 ENCODE Processing Pipeline 2e03ea22afb7a930eda64a74b6361faa https://www.encodeproject.org/files/ENCFF108EMH/@@download/ENCFF108EMH.bigBed GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF261LRY fastq reads ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1382664635 Richard Myers, HAIB 7d133b1f256ebfb6363851c65e82c2d6 SRA:SRR5331203 https://www.encodeproject.org/files/ENCFF261LRY/@@download/ENCFF261LRY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402KIC fastq reads ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2038930919 Richard Myers, HAIB ce0d37dd23ef137ee691026d72a39254 SRA:SRR5331202 https://www.encodeproject.org/files/ENCFF402KIC/@@download/ENCFF402KIC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF637CQD bam unfiltered alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF261LRY, ENCFF643CGH 1614820357 ENCODE Processing Pipeline 1e0759847dbb66bbac6feda39fdfa511 https://www.encodeproject.org/files/ENCFF637CQD/@@download/ENCFF637CQD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF259HFL bam unfiltered alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF261LRY, ENCFF807MUK 1612185014 ENCODE Processing Pipeline b64b47231e9a8ccc1bac13a5759252b1 https://www.encodeproject.org/files/ENCFF259HFL/@@download/ENCFF259HFL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF954QTJ bam unfiltered alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF402KIC, ENCFF643CGH 2397469385 ENCODE Processing Pipeline ded1092d7b6aaa761f3de033cc101d18 https://www.encodeproject.org/files/ENCFF954QTJ/@@download/ENCFF954QTJ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF297MHQ bam unfiltered alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF402KIC, ENCFF807MUK 2390548712 ENCODE Processing Pipeline 124bf267d4762608dd1f1f32029675cc https://www.encodeproject.org/files/ENCFF297MHQ/@@download/ENCFF297MHQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045LKN bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF261LRY, ENCFF643CGH 1310174525 ENCODE Processing Pipeline c77f74dda12b009afa916078159342aa https://www.encodeproject.org/files/ENCFF045LKN/@@download/ENCFF045LKN.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF206GMY bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF261LRY, ENCFF807MUK 1309809224 ENCODE Processing Pipeline e37c5868cf2ba27dbb6a8043086b63b2 https://www.encodeproject.org/files/ENCFF206GMY/@@download/ENCFF206GMY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF742QEL bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF402KIC, ENCFF643CGH 1744150805 ENCODE Processing Pipeline e43ce9b6791795a1b1ecde755295406d https://www.encodeproject.org/files/ENCFF742QEL/@@download/ENCFF742QEL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961GTC bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF402KIC, ENCFF807MUK 1742772147 ENCODE Processing Pipeline fce6fe3b178438b0d06b1881412a1b13 https://www.encodeproject.org/files/ENCFF961GTC/@@download/ENCFF961GTC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF487WHH bigWig signal p-value ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF045LKN 553552240 ENCODE Processing Pipeline 03da7e91d6ec710ec1a312f8d1199967 https://www.encodeproject.org/files/ENCFF487WHH/@@download/ENCFF487WHH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF384UUX bigWig signal p-value ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF742QEL 612959088 ENCODE Processing Pipeline 64c33d6522e944199fbd477ae7ba4e55 https://www.encodeproject.org/files/ENCFF384UUX/@@download/ENCFF384UUX.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF792FNY bigWig signal p-value ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045LKN, ENCFF742QEL 677803834 ENCODE Processing Pipeline 24c110523aee853720bb812867c994ee https://www.encodeproject.org/files/ENCFF792FNY/@@download/ENCFF792FNY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF500YGL bigWig fold change over control ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF742QEL 600257730 ENCODE Processing Pipeline 7f1ed687a0fd4943468f3ff6cef6d3bd https://www.encodeproject.org/files/ENCFF500YGL/@@download/ENCFF500YGL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF692ATK bigWig fold change over control ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF045LKN 511539248 ENCODE Processing Pipeline e6a675fb249e203578ca19d91153909b https://www.encodeproject.org/files/ENCFF692ATK/@@download/ENCFF692ATK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF722YGP bigWig fold change over control ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045LKN, ENCFF742QEL 946805315 ENCODE Processing Pipeline 7e799e46ff3d57ab3329d61898b73c79 https://www.encodeproject.org/files/ENCFF722YGP/@@download/ENCFF722YGP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF062NZW bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF045LKN 6306076 ENCODE Processing Pipeline 6e0d2c3a9d6beaec4de319844d2f0732 https://www.encodeproject.org/files/ENCFF062NZW/@@download/ENCFF062NZW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF698AFP bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045LKN, ENCFF742QEL 6836560 ENCODE Processing Pipeline 8dc2d720dd01b58277eb42f5423e5db8 https://www.encodeproject.org/files/ENCFF698AFP/@@download/ENCFF698AFP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF318KIV bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF742QEL 6084016 ENCODE Processing Pipeline d36bd08930bf3f475fcc7defe5aa61f9 https://www.encodeproject.org/files/ENCFF318KIV/@@download/ENCFF318KIV.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF730VOM bigBed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF062NZW 12910673 ENCODE Processing Pipeline 6b9c2c42fed8abf83be012e1e7786e7e https://www.encodeproject.org/files/ENCFF730VOM/@@download/ENCFF730VOM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF064YFD bigBed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF318KIV 13242305 ENCODE Processing Pipeline 5b8c52988b27ba37ccdf1dccb6c63ebf https://www.encodeproject.org/files/ENCFF064YFD/@@download/ENCFF064YFD.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF366QTN bigBed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF698AFP 12959004 ENCODE Processing Pipeline 6361f9b1260d7a9a310458d1cbd961b4 https://www.encodeproject.org/files/ENCFF366QTN/@@download/ENCFF366QTN.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF470INJ bed narrowPeak conservative idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF062NZW, ENCFF318KIV, ENCFF419RSJ, ENCFF698AFP 287658 ENCODE Processing Pipeline be99ac3fa0098a79f4f3001c71d52596 https://www.encodeproject.org/files/ENCFF470INJ/@@download/ENCFF470INJ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028YAP bigBed narrowPeak conservative idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF470INJ 645454 ENCODE Processing Pipeline 42ac97a52022d804650ca03ccb26d4cc https://www.encodeproject.org/files/ENCFF028YAP/@@download/ENCFF028YAP.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF914TSO bed narrowPeak optimal idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF062NZW, ENCFF318KIV, ENCFF419RSJ, ENCFF698AFP 454003 ENCODE Processing Pipeline 2bafd1e4138874ef57ba0e233ee93691 https://www.encodeproject.org/files/ENCFF914TSO/@@download/ENCFF914TSO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF881TFG bigBed narrowPeak optimal idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF914TSO 906891 ENCODE Processing Pipeline 5251403c2646cb16ae1c58380cf5a720 https://www.encodeproject.org/files/ENCFF881TFG/@@download/ENCFF881TFG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF635WZG bigWig signal p-value ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF961GTC 1243045830 ENCODE Processing Pipeline 5dcf350c2c1cbe18f2eb09e4f31d10aa https://www.encodeproject.org/files/ENCFF635WZG/@@download/ENCFF635WZG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF987TZC bigWig signal p-value ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF206GMY 1242360008 ENCODE Processing Pipeline 294c9e620be6b2ef2d364f7c17131a98 https://www.encodeproject.org/files/ENCFF987TZC/@@download/ENCFF987TZC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF215VUM bigWig signal p-value ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF206GMY, ENCFF961GTC 1320394124 ENCODE Processing Pipeline e62c8a87f302c402d830dc9c86281c90 https://www.encodeproject.org/files/ENCFF215VUM/@@download/ENCFF215VUM.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF729XSK bigWig fold change over control ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF206GMY 968890161 ENCODE Processing Pipeline 5e8ee39e63df31cc422362c8960fcc42 https://www.encodeproject.org/files/ENCFF729XSK/@@download/ENCFF729XSK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF377FJF bigWig fold change over control ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF961GTC 1061101790 ENCODE Processing Pipeline d438f5a1fd6b263738e28bd638634362 https://www.encodeproject.org/files/ENCFF377FJF/@@download/ENCFF377FJF.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF903JLK bigWig fold change over control ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF206GMY, ENCFF961GTC 1542977270 ENCODE Processing Pipeline d8d843872f8c6e4d1f7633b15634d7ca https://www.encodeproject.org/files/ENCFF903JLK/@@download/ENCFF903JLK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF620TDM bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF206GMY 6787270 ENCODE Processing Pipeline 79900484dce7fb22875f97caa569e21d https://www.encodeproject.org/files/ENCFF620TDM/@@download/ENCFF620TDM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF381ZGO bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF961GTC 6672164 ENCODE Processing Pipeline 4ebed3309cd75ab37a60b84b13491cbb https://www.encodeproject.org/files/ENCFF381ZGO/@@download/ENCFF381ZGO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF063ZLC bigBed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF620TDM 12916768 ENCODE Processing Pipeline e7d7e8fed144346b7485d53ee1c0a168 https://www.encodeproject.org/files/ENCFF063ZLC/@@download/ENCFF063ZLC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF336VHS bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF206GMY, ENCFF961GTC 7025566 ENCODE Processing Pipeline 8ced14c54f2cf142dec140cec828960f https://www.encodeproject.org/files/ENCFF336VHS/@@download/ENCFF336VHS.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF825HTR bigBed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF381ZGO 13284144 ENCODE Processing Pipeline 9bd92cc87b2fa6fc359213dbad83c6f3 https://www.encodeproject.org/files/ENCFF825HTR/@@download/ENCFF825HTR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF250DOK bigBed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF336VHS 12914066 ENCODE Processing Pipeline 96d10f2e78996bef140c74f9debc782d https://www.encodeproject.org/files/ENCFF250DOK/@@download/ENCFF250DOK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF750UVK bed narrowPeak conservative idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF336VHS, ENCFF381ZGO, ENCFF620TDM 290829 ENCODE Processing Pipeline 564876d427aa51f973aab85e6e66e09a https://www.encodeproject.org/files/ENCFF750UVK/@@download/ENCFF750UVK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515VAF bed narrowPeak optimal idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF336VHS, ENCFF381ZGO, ENCFF620TDM 429154 ENCODE Processing Pipeline 4c0c30001d9d56ec1d5a6f6d247de5ee https://www.encodeproject.org/files/ENCFF515VAF/@@download/ENCFF515VAF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF899EBQ bigBed narrowPeak conservative idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF750UVK 549755 ENCODE Processing Pipeline 46e92a6857abd4bacafeb16d3f375d5c https://www.encodeproject.org/files/ENCFF899EBQ/@@download/ENCFF899EBQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF290MUH bigBed narrowPeak optimal idr thresholded peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF515VAF 909626 ENCODE Processing Pipeline 6caed930704f9ad7d2efadcf6dd96900 https://www.encodeproject.org/files/ENCFF290MUH/@@download/ENCFF290MUH.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF041ZHS fastq reads ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 1323143295 Richard Myers, HAIB d19272fea32cab6cf973f41a07386606 https://www.encodeproject.org/files/ENCFF041ZHS/@@download/ENCFF041ZHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF259PTD bam unfiltered alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 76 ENCFF041ZHS, ENCFF643CGH 1575314568 ENCODE Processing Pipeline 1ab5c31695478b23118829f11f70fd0a https://www.encodeproject.org/files/ENCFF259PTD/@@download/ENCFF259PTD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF786FKJ bam unfiltered alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 76 ENCFF041ZHS, ENCFF807MUK 1572080851 ENCODE Processing Pipeline fcd7bc0356373ddf58cf6b49d40360e0 https://www.encodeproject.org/files/ENCFF786FKJ/@@download/ENCFF786FKJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF603ARU bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 76 ENCFF041ZHS, ENCFF643CGH 1136997453 ENCODE Processing Pipeline de44f3b4a2356429d97b3492f7573225 https://www.encodeproject.org/files/ENCFF603ARU/@@download/ENCFF603ARU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF447QIZ bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 76 ENCFF041ZHS, ENCFF807MUK 1136396904 ENCODE Processing Pipeline 7c92bfb5dae299636e62f4b4795c1c92 https://www.encodeproject.org/files/ENCFF447QIZ/@@download/ENCFF447QIZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF284DII fastq reads ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1471619272 Richard Myers, HAIB 6858d38522816bf94ecb9ef038ee2c82 https://www.encodeproject.org/files/ENCFF284DII/@@download/ENCFF284DII.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF753QQD bam unfiltered alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 76 ENCFF284DII, ENCFF643CGH 1804141032 ENCODE Processing Pipeline 749dcb62cee1268df74a20ece13c043c https://www.encodeproject.org/files/ENCFF753QQD/@@download/ENCFF753QQD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF709FGO bam unfiltered alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 76 ENCFF284DII, ENCFF807MUK 1799769381 ENCODE Processing Pipeline b1a4c95a9d471e71fa9bccce325a1588 https://www.encodeproject.org/files/ENCFF709FGO/@@download/ENCFF709FGO.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF239NEJ bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 76 ENCFF284DII, ENCFF643CGH 1407433315 ENCODE Processing Pipeline 68c73b0939a5ef773b27ef60037290e2 https://www.encodeproject.org/files/ENCFF239NEJ/@@download/ENCFF239NEJ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF456NXL bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 76 ENCFF284DII, ENCFF807MUK 1406631309 ENCODE Processing Pipeline 3de20937e4a6dfbd0f71e4c898f5ea8a https://www.encodeproject.org/files/ENCFF456NXL/@@download/ENCFF456NXL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF893XTH bigWig signal p-value ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF447QIZ, ENCFF456NXL 639678392 ENCODE Processing Pipeline e6a8e9e534d83af976b4af04bd45add1 https://www.encodeproject.org/files/ENCFF893XTH/@@download/ENCFF893XTH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF879OMV bigWig fold change over control ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF603ARU 546216815 ENCODE Processing Pipeline 591ae30cfe26addcdf4435267f529e95 https://www.encodeproject.org/files/ENCFF879OMV/@@download/ENCFF879OMV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF293AWG bigWig fold change over control ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF447QIZ, ENCFF456NXL 781053965 ENCODE Processing Pipeline 61cac77113d0b0cf9f553bf100d08e3a https://www.encodeproject.org/files/ENCFF293AWG/@@download/ENCFF293AWG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF175QVA bigWig signal p-value ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF456NXL 523559022 ENCODE Processing Pipeline 0c79dd3652ac7ca083d4d2ec5b305a35 https://www.encodeproject.org/files/ENCFF175QVA/@@download/ENCFF175QVA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF908FIY bigWig fold change over control ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF447QIZ 443754595 ENCODE Processing Pipeline f0173f9cb1c929d17f1a7f8984ba8011 https://www.encodeproject.org/files/ENCFF908FIY/@@download/ENCFF908FIY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF564SWC bigWig signal p-value ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF239NEJ 540060871 ENCODE Processing Pipeline 3b5d6fb4cbcf70f92de61763cd968b59 https://www.encodeproject.org/files/ENCFF564SWC/@@download/ENCFF564SWC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF103WKP bigWig fold change over control ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF456NXL 482150997 ENCODE Processing Pipeline 8316409983c19aba5740e778b03ea08f https://www.encodeproject.org/files/ENCFF103WKP/@@download/ENCFF103WKP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF774BTR bigWig signal p-value ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF447QIZ 567109851 ENCODE Processing Pipeline 1bb14b4cc7cac928188107977cd4943c https://www.encodeproject.org/files/ENCFF774BTR/@@download/ENCFF774BTR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF028ISK bigWig signal p-value ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF603ARU 490826214 ENCODE Processing Pipeline 620910725e46a60a2464b5068f5678b2 https://www.encodeproject.org/files/ENCFF028ISK/@@download/ENCFF028ISK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF129OFR bigWig fold change over control ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF239NEJ 490528911 ENCODE Processing Pipeline 4cea3ccc74621d06d6d51ac8a4751b24 https://www.encodeproject.org/files/ENCFF129OFR/@@download/ENCFF129OFR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF023HMY bigWig signal p-value ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF239NEJ, ENCFF603ARU 623778127 ENCODE Processing Pipeline 92e4b3c3faa4e5ddd49a7cd94aa0d2aa https://www.encodeproject.org/files/ENCFF023HMY/@@download/ENCFF023HMY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF015GGC bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF447QIZ 5991238 ENCODE Processing Pipeline 5438f4abe78a80eab1b87b8eac428a30 https://www.encodeproject.org/files/ENCFF015GGC/@@download/ENCFF015GGC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF958UJB bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF603ARU 6626907 ENCODE Processing Pipeline 1ddf351fef530cf0df504ff4b961d811 https://www.encodeproject.org/files/ENCFF958UJB/@@download/ENCFF958UJB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF053WYG bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF239NEJ, ENCFF603ARU 6490744 ENCODE Processing Pipeline 48d4221170c9acc701899e649a462874 https://www.encodeproject.org/files/ENCFF053WYG/@@download/ENCFF053WYG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF626CMX bigBed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF958UJB 12692955 ENCODE Processing Pipeline 8aa405364b4d57dc9b0f909e12cfe72c https://www.encodeproject.org/files/ENCFF626CMX/@@download/ENCFF626CMX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF133TBZ bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF456NXL 5581188 ENCODE Processing Pipeline b6193d93e2d754cd6791341ecdf9d64c https://www.encodeproject.org/files/ENCFF133TBZ/@@download/ENCFF133TBZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF023ZKG bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF447QIZ, ENCFF456NXL 6532335 ENCODE Processing Pipeline 774e657c53f149cca913b933befe8c79 https://www.encodeproject.org/files/ENCFF023ZKG/@@download/ENCFF023ZKG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF849LEK bigBed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF015GGC 13116637 ENCODE Processing Pipeline e1775d9afcdbe53362c2f052935864a7 https://www.encodeproject.org/files/ENCFF849LEK/@@download/ENCFF849LEK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF110LLP bigWig fold change over control ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF239NEJ, ENCFF603ARU 767875001 ENCODE Processing Pipeline a2a6ddea26331f8e30a72a18e20afc6d https://www.encodeproject.org/files/ENCFF110LLP/@@download/ENCFF110LLP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF386LMI bigBed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF023ZKG 13097489 ENCODE Processing Pipeline e8d0d1ac8fe32bfe0123039b8d1ca84e https://www.encodeproject.org/files/ENCFF386LMI/@@download/ENCFF386LMI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF335DMN bigBed narrowPeak conservative idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF650LIT 216719 ENCODE Processing Pipeline beddd5dc8efb6aa621b2bf99ff98ab85 https://www.encodeproject.org/files/ENCFF335DMN/@@download/ENCFF335DMN.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF448SUD bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF239NEJ 5536946 ENCODE Processing Pipeline 56d8104bdd9f2839539ecb275a1c76ef https://www.encodeproject.org/files/ENCFF448SUD/@@download/ENCFF448SUD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF035DIP bigBed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF448SUD 13168720 ENCODE Processing Pipeline f2d0accf98757c3fe34e69a61ccfa23c https://www.encodeproject.org/files/ENCFF035DIP/@@download/ENCFF035DIP.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF329AGZ bigBed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF133TBZ 13166721 ENCODE Processing Pipeline 09384fed81b2a8fe709cb38d786924bc https://www.encodeproject.org/files/ENCFF329AGZ/@@download/ENCFF329AGZ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF800FXA bigBed narrowPeak optimal idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF804RUY 271684 ENCODE Processing Pipeline 515c54950125cebbfda065e65026283a https://www.encodeproject.org/files/ENCFF800FXA/@@download/ENCFF800FXA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF650LIT bed narrowPeak conservative idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF015GGC, ENCFF023ZKG, ENCFF133TBZ 90041 ENCODE Processing Pipeline f2e630d126ac338b4f692a6141d5b51f https://www.encodeproject.org/files/ENCFF650LIT/@@download/ENCFF650LIT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF804RUY bed narrowPeak optimal idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF015GGC, ENCFF023ZKG, ENCFF133TBZ 125949 ENCODE Processing Pipeline 8919853879d9fd8847317a9f728a4010 https://www.encodeproject.org/files/ENCFF804RUY/@@download/ENCFF804RUY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF712NRE bigBed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF053WYG 13124732 ENCODE Processing Pipeline 01150de071030fb632f455f366127964 https://www.encodeproject.org/files/ENCFF712NRE/@@download/ENCFF712NRE.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF353FRG bed narrowPeak conservative idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF053WYG, ENCFF419RSJ, ENCFF448SUD, ENCFF958UJB 63942 ENCODE Processing Pipeline db9bf74f84c3f7895032673b253f012d https://www.encodeproject.org/files/ENCFF353FRG/@@download/ENCFF353FRG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF675ZSI bigBed narrowPeak conservative idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF353FRG 175750 ENCODE Processing Pipeline 4c50abbf885706c1858c686de9df0784 https://www.encodeproject.org/files/ENCFF675ZSI/@@download/ENCFF675ZSI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF158PPW bed narrowPeak optimal idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF053WYG, ENCFF419RSJ, ENCFF448SUD, ENCFF958UJB 129233 ENCODE Processing Pipeline 38897a5bb6cf83a39b904c357578d758 https://www.encodeproject.org/files/ENCFF158PPW/@@download/ENCFF158PPW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF322DSH bigBed narrowPeak optimal idr thresholded peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF158PPW 278818 ENCODE Processing Pipeline 76ac2aad05666db96d4310c778faf9f3 https://www.encodeproject.org/files/ENCFF322DSH/@@download/ENCFF322DSH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF232GAY bam unfiltered alignments ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF106TQC, ENCFF774SIF, ENCFF807MUK 6745683339 ENCODE Processing Pipeline 925e58adc40c46afece9e0d76b1f98fa https://www.encodeproject.org/files/ENCFF232GAY/@@download/ENCFF232GAY.bam hg19 released antibody characterized with exemption ENCFF774SIF fastq reads ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF106TQC 3031937984 Michael Snyder, Stanford f005b587dd9e09c938a2f418f50c22e1 SRA:SRR6213705 https://www.encodeproject.org/files/ENCFF774SIF/@@download/ENCFF774SIF.fastq.gz Illumina HiSeq 2000 /files/ENCFF165UVC/ released antibody characterized with exemption ENCFF106TQC fastq reads ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF774SIF 3118264975 Michael Snyder, Stanford 3944ca88f569a0e978eaf721a3c3c6c4 SRA:SRR6213705 https://www.encodeproject.org/files/ENCFF106TQC/@@download/ENCFF106TQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF694VZW/ released antibody characterized with exemption ENCFF370DPP bam alignments ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF106TQC, ENCFF774SIF, ENCFF807MUK 5687484560 ENCODE Processing Pipeline eafe96ac6177debf1340bac84fced490 https://www.encodeproject.org/files/ENCFF370DPP/@@download/ENCFF370DPP.bam hg19 released antibody characterized with exemption ENCFF583IEN bam unfiltered alignments ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF106TQC, ENCFF643CGH, ENCFF774SIF 6756199282 ENCODE Processing Pipeline 12297e0e128f7704b7d68d871557d4ac https://www.encodeproject.org/files/ENCFF583IEN/@@download/ENCFF583IEN.bam GRCh38 released antibody characterized with exemption ENCFF903NKV bam alignments ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF106TQC, ENCFF643CGH, ENCFF774SIF 5699938908 ENCODE Processing Pipeline ec764d52130a6d54a84e62279eb4faa7 https://www.encodeproject.org/files/ENCFF903NKV/@@download/ENCFF903NKV.bam GRCh38 released antibody characterized with exemption ENCFF925TGL bigWig signal p-value ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF370DPP, ENCFF403WUZ 1079678671 ENCODE Processing Pipeline ec1b9c4edfa3c869ecdbf39f01bee523 https://www.encodeproject.org/files/ENCFF925TGL/@@download/ENCFF925TGL.bigWig hg19 released antibody characterized with exemption ENCFF877QMQ bed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF370DPP, ENCFF403WUZ 6430493 ENCODE Processing Pipeline cbce1ae827e70b00ddb3b8346d602677 https://www.encodeproject.org/files/ENCFF877QMQ/@@download/ENCFF877QMQ.bed.gz hg19 released antibody characterized with exemption ENCFF003YLJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF877QMQ 370690 ENCODE Processing Pipeline ff5cd00df1ba8abf45115f40b9fb5b84 https://www.encodeproject.org/files/ENCFF003YLJ/@@download/ENCFF003YLJ.bed.gz hg19 released antibody characterized with exemption ENCFF435CEQ bigWig fold change over control ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF370DPP, ENCFF403WUZ 1337197024 ENCODE Processing Pipeline 14b26c27d4da65d856991084f0b4d08a https://www.encodeproject.org/files/ENCFF435CEQ/@@download/ENCFF435CEQ.bigWig hg19 released antibody characterized with exemption ENCFF857OID bigBed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF877QMQ 11496478 ENCODE Processing Pipeline b75f89ff2ec7ec56cb17b8061cdac227 https://www.encodeproject.org/files/ENCFF857OID/@@download/ENCFF857OID.bigBed hg19 released antibody characterized with exemption ENCFF959CLQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF003YLJ 710850 ENCODE Processing Pipeline 98f1b3126b4617d6997dbac65e65b73b https://www.encodeproject.org/files/ENCFF959CLQ/@@download/ENCFF959CLQ.bigBed hg19 released antibody characterized with exemption ENCFF219HLR bigBed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF882NVP 11505500 ENCODE Processing Pipeline 51ce09e1db5d6dccd629085884419b5c https://www.encodeproject.org/files/ENCFF219HLR/@@download/ENCFF219HLR.bigBed GRCh38 released antibody characterized with exemption ENCFF248QUD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF882NVP 371183 ENCODE Processing Pipeline 80f48517315dfe39b6958947d99bfe26 https://www.encodeproject.org/files/ENCFF248QUD/@@download/ENCFF248QUD.bed.gz GRCh38 released antibody characterized with exemption ENCFF750TQO bigWig signal p-value ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF376BTL, ENCFF903NKV 1112690421 ENCODE Processing Pipeline 41b286e3f58a4163b8910423f9d3274b https://www.encodeproject.org/files/ENCFF750TQO/@@download/ENCFF750TQO.bigWig GRCh38 released antibody characterized with exemption ENCFF882NVP bed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF376BTL, ENCFF903NKV 6434271 ENCODE Processing Pipeline 785b4cacd8b5b0365427835bfc58984d https://www.encodeproject.org/files/ENCFF882NVP/@@download/ENCFF882NVP.bed.gz GRCh38 released antibody characterized with exemption ENCFF805OEN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF248QUD 713839 ENCODE Processing Pipeline c875debb1665ab093f15392cee742e9e https://www.encodeproject.org/files/ENCFF805OEN/@@download/ENCFF805OEN.bigBed GRCh38 released antibody characterized with exemption ENCFF551SXN bigWig fold change over control ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF376BTL, ENCFF903NKV 1313269702 ENCODE Processing Pipeline 2542522f25fcf73b2e38878118d84504 https://www.encodeproject.org/files/ENCFF551SXN/@@download/ENCFF551SXN.bigWig GRCh38 released antibody characterized with exemption ENCFF278ZFA bam unfiltered alignments ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF372GPW, ENCFF807MUK, ENCFF881VQU 4610940507 ENCODE Processing Pipeline 86e860c2897549b13196ab08093d317d https://www.encodeproject.org/files/ENCFF278ZFA/@@download/ENCFF278ZFA.bam hg19 released control low read depth, antibody characterized with exemption ENCFF372GPW fastq reads ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF881VQU 2033706005 Michael Snyder, Stanford 38bff894bdaccde38a5102bfe73e6b6f SRA:SRR6214339 https://www.encodeproject.org/files/ENCFF372GPW/@@download/ENCFF372GPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF857OPQ/ released control low read depth, antibody characterized with exemption ENCFF881VQU fastq reads ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF372GPW 2000917026 Michael Snyder, Stanford c44bb3d1c877a8febe19d592731fb750 SRA:SRR6214339 https://www.encodeproject.org/files/ENCFF881VQU/@@download/ENCFF881VQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF453CTT/ released control low read depth, antibody characterized with exemption ENCFF080WMH bam alignments ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF372GPW, ENCFF807MUK, ENCFF881VQU 3974602133 ENCODE Processing Pipeline 17d3fa31f67101ee267d9bc284053a17 https://www.encodeproject.org/files/ENCFF080WMH/@@download/ENCFF080WMH.bam hg19 released control low read depth, antibody characterized with exemption ENCFF279PAT bam unfiltered alignments ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF372GPW, ENCFF643CGH, ENCFF881VQU 4620960573 ENCODE Processing Pipeline b77bb44e2b2f5e645c2e508b7eae0846 https://www.encodeproject.org/files/ENCFF279PAT/@@download/ENCFF279PAT.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF780OIC bam alignments ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF372GPW, ENCFF643CGH, ENCFF881VQU 3982291322 ENCODE Processing Pipeline c5b8dedcc228560d35ef175f05ef1b34 https://www.encodeproject.org/files/ENCFF780OIC/@@download/ENCFF780OIC.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF828UBR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF142PDO 2637 ENCODE Processing Pipeline 832b158cdc4041222075f1d001a90fa6 https://www.encodeproject.org/files/ENCFF828UBR/@@download/ENCFF828UBR.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF142PDO bed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF080WMH, ENCFF880RWA 3956703 ENCODE Processing Pipeline 41b35e5618e558377cb578e258e6e7a7 https://www.encodeproject.org/files/ENCFF142PDO/@@download/ENCFF142PDO.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF277ANO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF828UBR 39627 ENCODE Processing Pipeline ba786649860f8bddb7faf56a36ae9c57 https://www.encodeproject.org/files/ENCFF277ANO/@@download/ENCFF277ANO.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF870YEI bigWig signal p-value ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF080WMH, ENCFF880RWA 807205143 ENCODE Processing Pipeline f0980657d351bc24675afe96fa6b2e43 https://www.encodeproject.org/files/ENCFF870YEI/@@download/ENCFF870YEI.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF413OBX bigWig fold change over control ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF080WMH, ENCFF880RWA 871808277 ENCODE Processing Pipeline 810e90c47e75dbdddefa5672f15945fb https://www.encodeproject.org/files/ENCFF413OBX/@@download/ENCFF413OBX.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF651QPL bigBed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF142PDO 6861455 ENCODE Processing Pipeline 7ec72f6ea285abe22b637a3357c36afb https://www.encodeproject.org/files/ENCFF651QPL/@@download/ENCFF651QPL.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF896ZBU bed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF709NCT, ENCFF780OIC 4873026 ENCODE Processing Pipeline 787306b5415b7de63f6dff01e271db1b https://www.encodeproject.org/files/ENCFF896ZBU/@@download/ENCFF896ZBU.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF848ZIL bigWig fold change over control ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF709NCT, ENCFF780OIC 872710915 ENCODE Processing Pipeline 2dbde3c224e4d2960ff87ebcfde94a03 https://www.encodeproject.org/files/ENCFF848ZIL/@@download/ENCFF848ZIL.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF114IFZ bigBed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF896ZBU 11280683 ENCODE Processing Pipeline c16da2413f5da541e6c3a9e7237e3335 https://www.encodeproject.org/files/ENCFF114IFZ/@@download/ENCFF114IFZ.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF201JTI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF831BFL 49164 ENCODE Processing Pipeline 9a8dacccadc50c846b6ca6735f390144 https://www.encodeproject.org/files/ENCFF201JTI/@@download/ENCFF201JTI.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF170WTD bigWig signal p-value ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF709NCT, ENCFF780OIC 809041480 ENCODE Processing Pipeline 3890a1b2e8bb311a5dd48dbd3a18a1cb https://www.encodeproject.org/files/ENCFF170WTD/@@download/ENCFF170WTD.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF831BFL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF896ZBU 2480 ENCODE Processing Pipeline c8990f8ea41bc1a527e1f55ac4ec2f58 https://www.encodeproject.org/files/ENCFF831BFL/@@download/ENCFF831BFL.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF373KIQ fastq reads ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF234XIN 2878706034 Michael Snyder, Stanford 801160e7ec8ea3245fc22bfd8780e0bb SRA:SRR6213082 https://www.encodeproject.org/files/ENCFF373KIQ/@@download/ENCFF373KIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF681BWM fastq reads ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF909TNH 2901669065 Michael Snyder, Stanford 020ca4102b417b176807bfb76cf31e05 SRA:SRR6213081 https://www.encodeproject.org/files/ENCFF681BWM/@@download/ENCFF681BWM.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF909TNH fastq reads ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF681BWM 3563446579 Michael Snyder, Stanford 18d5ff2a8b9c6f7f1cc0a645bc913923 SRA:SRR6213081 https://www.encodeproject.org/files/ENCFF909TNH/@@download/ENCFF909TNH.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF234XIN fastq reads ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF373KIQ 2298789163 Michael Snyder, Stanford ce6749f327148af71e07c7306cbe5dbc SRA:SRR6213082 https://www.encodeproject.org/files/ENCFF234XIN/@@download/ENCFF234XIN.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF274ERQ bam unfiltered alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF234XIN, ENCFF373KIQ, ENCFF643CGH 5408739436 ENCODE Processing Pipeline 05dde17a169c9e54790d7013e67bb24e https://www.encodeproject.org/files/ENCFF274ERQ/@@download/ENCFF274ERQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF426ZKI bam unfiltered alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF681BWM, ENCFF909TNH 6524257444 ENCODE Processing Pipeline 00e7ac203b3e961b676b4dfea8b143f7 https://www.encodeproject.org/files/ENCFF426ZKI/@@download/ENCFF426ZKI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF595QKN bam unfiltered alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF681BWM, ENCFF807MUK, ENCFF909TNH 6511665661 ENCODE Processing Pipeline b0227e61fb9d2f9de88742c2d101de69 https://www.encodeproject.org/files/ENCFF595QKN/@@download/ENCFF595QKN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF696XHK bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF234XIN, ENCFF373KIQ, ENCFF643CGH 4295245822 ENCODE Processing Pipeline 6a0d2ac5cc611c35b41755ad701c9105 https://www.encodeproject.org/files/ENCFF696XHK/@@download/ENCFF696XHK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF030QHF bam unfiltered alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF234XIN, ENCFF373KIQ, ENCFF807MUK 5397747015 ENCODE Processing Pipeline d6d0838a21b59cb549359d816f9de516 https://www.encodeproject.org/files/ENCFF030QHF/@@download/ENCFF030QHF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF328RQW bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF234XIN, ENCFF373KIQ, ENCFF807MUK 4290986914 ENCODE Processing Pipeline 211563978d44a6aff33fd948b498968b https://www.encodeproject.org/files/ENCFF328RQW/@@download/ENCFF328RQW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF764JDZ bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF681BWM, ENCFF807MUK, ENCFF909TNH 5314128578 ENCODE Processing Pipeline 1ac021fbba25d4891d24ca26cb0ff269 https://www.encodeproject.org/files/ENCFF764JDZ/@@download/ENCFF764JDZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF473ZIB bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF681BWM, ENCFF909TNH 5319674078 ENCODE Processing Pipeline f1c97bd7a04146d5c8acfe72a64370ca https://www.encodeproject.org/files/ENCFF473ZIB/@@download/ENCFF473ZIB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF073DVY bigWig signal p-value ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF473ZIB, ENCFF810LLR 1655514321 ENCODE Processing Pipeline 168a9bc5e97a31d3ac8a4b9edfee3234 https://www.encodeproject.org/files/ENCFF073DVY/@@download/ENCFF073DVY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF965TSE bigBed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF654KJD 11223936 ENCODE Processing Pipeline 9f44494bbd95b2dd678f616ce64ff91a https://www.encodeproject.org/files/ENCFF965TSE/@@download/ENCFF965TSE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF616CMT bigBed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF437GUI 11271098 ENCODE Processing Pipeline cf6bc89bfec0d724b2a4b4b60e85201e https://www.encodeproject.org/files/ENCFF616CMT/@@download/ENCFF616CMT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF654KJD bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF696XHK, ENCFF810LLR 6534212 ENCODE Processing Pipeline 9b10341e85850182af29afd21073728c https://www.encodeproject.org/files/ENCFF654KJD/@@download/ENCFF654KJD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF567RLB bed narrowPeak conservative idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF437GUI, ENCFF654KJD, ENCFF873WUY 32096 ENCODE Processing Pipeline 921994c146f872aa2bbcc0f4be181a5f https://www.encodeproject.org/files/ENCFF567RLB/@@download/ENCFF567RLB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF500ABD bed narrowPeak optimal idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF437GUI, ENCFF654KJD, ENCFF873WUY 51879 ENCODE Processing Pipeline 0ad26b74bd5b03f797bca28c250d6e72 https://www.encodeproject.org/files/ENCFF500ABD/@@download/ENCFF500ABD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF808EAV bigWig fold change over control ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF473ZIB, ENCFF810LLR 1785158237 ENCODE Processing Pipeline ac1b7b2013e7aa3bd81cc3f347024900 https://www.encodeproject.org/files/ENCFF808EAV/@@download/ENCFF808EAV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF772PPJ bigWig fold change over control ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF696XHK, ENCFF810LLR 1541760530 ENCODE Processing Pipeline dc85a32ce05cbe0106cefd020e5f690e https://www.encodeproject.org/files/ENCFF772PPJ/@@download/ENCFF772PPJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF958WAC bigWig fold change over control ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF473ZIB, ENCFF696XHK, ENCFF810LLR 2267379129 ENCODE Processing Pipeline f3fc7c893750d90dd1a4e8be67f8f59a https://www.encodeproject.org/files/ENCFF958WAC/@@download/ENCFF958WAC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF873WUY bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF473ZIB, ENCFF810LLR 6741948 ENCODE Processing Pipeline 2afbef043cfe01293a17af13b9a8533d https://www.encodeproject.org/files/ENCFF873WUY/@@download/ENCFF873WUY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF708FPE bigWig signal p-value ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF696XHK, ENCFF810LLR 1249160666 ENCODE Processing Pipeline 97d6fec207f0df858b20d46ed67588c4 https://www.encodeproject.org/files/ENCFF708FPE/@@download/ENCFF708FPE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF909LQW bigWig signal p-value ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF473ZIB, ENCFF696XHK, ENCFF810LLR 1974046210 ENCODE Processing Pipeline 695590ada93be1c5d009a52c495068fc https://www.encodeproject.org/files/ENCFF909LQW/@@download/ENCFF909LQW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF021ZBN bigBed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF873WUY 11059404 ENCODE Processing Pipeline 97b3f60e5eac29d283efc4b773fdbf32 https://www.encodeproject.org/files/ENCFF021ZBN/@@download/ENCFF021ZBN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF437GUI bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF473ZIB, ENCFF696XHK, ENCFF810LLR 7333471 ENCODE Processing Pipeline ac88dde480de8b376ece252b261f9504 https://www.encodeproject.org/files/ENCFF437GUI/@@download/ENCFF437GUI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF806YAP bigBed narrowPeak conservative idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF567RLB 106282 ENCODE Processing Pipeline 92a78444c3567c43038bbc1ae586bc80 https://www.encodeproject.org/files/ENCFF806YAP/@@download/ENCFF806YAP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF611QYH bigBed narrowPeak optimal idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF500ABD 134507 ENCODE Processing Pipeline c9c5e581c72e1687710c02adae031b3d https://www.encodeproject.org/files/ENCFF611QYH/@@download/ENCFF611QYH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF322TPZ bigWig signal p-value ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764JDZ 1442966267 ENCODE Processing Pipeline b616a72f569747171dd7d3f86006fece https://www.encodeproject.org/files/ENCFF322TPZ/@@download/ENCFF322TPZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF062KAH bigWig fold change over control ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF328RQW 1537685208 ENCODE Processing Pipeline 842bb4175f8660caeaac7ad7b3e4cd3b https://www.encodeproject.org/files/ENCFF062KAH/@@download/ENCFF062KAH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF679NLN bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF328RQW 6527501 ENCODE Processing Pipeline a8b7dd9bb660673db1fa6cf3b7826ce6 https://www.encodeproject.org/files/ENCFF679NLN/@@download/ENCFF679NLN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF126EEW bigWig signal p-value ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF328RQW 1519177433 ENCODE Processing Pipeline 6ea45d7b5464783c4f7a6dffd585dc36 https://www.encodeproject.org/files/ENCFF126EEW/@@download/ENCFF126EEW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF664UGX bigWig fold change over control ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764JDZ 1781918097 ENCODE Processing Pipeline 24cac528acee41e06add47166b635887 https://www.encodeproject.org/files/ENCFF664UGX/@@download/ENCFF664UGX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF670VRJ bigBed narrowPeak optimal idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF957YKG 130079 ENCODE Processing Pipeline 193e807fbb0f679ddf2d415295a250be https://www.encodeproject.org/files/ENCFF670VRJ/@@download/ENCFF670VRJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF724ZOA bigWig signal p-value ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF328RQW, ENCFF764JDZ 1932801821 ENCODE Processing Pipeline 7c456353ffabc0dfc9f565110284cea9 https://www.encodeproject.org/files/ENCFF724ZOA/@@download/ENCFF724ZOA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF349PIJ bigBed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF679NLN 11207437 ENCODE Processing Pipeline 82f1222ad54fe8fb57f786f196b6905f https://www.encodeproject.org/files/ENCFF349PIJ/@@download/ENCFF349PIJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF432JZQ bed narrowPeak conservative idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF091FKF, ENCFF679NLN, ENCFF984CKR 31178 ENCODE Processing Pipeline 7d4863b1257f997ced12a8a54510b5d0 https://www.encodeproject.org/files/ENCFF432JZQ/@@download/ENCFF432JZQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF090KMO bigWig fold change over control ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF328RQW, ENCFF764JDZ 2220606835 ENCODE Processing Pipeline 2c952fea4bb29cc7aba254c0122b5316 https://www.encodeproject.org/files/ENCFF090KMO/@@download/ENCFF090KMO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF091FKF bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764JDZ 6736798 ENCODE Processing Pipeline d2c9f744c51595bdbef60dd3af01647f https://www.encodeproject.org/files/ENCFF091FKF/@@download/ENCFF091FKF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF820XTZ bigBed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF091FKF 11046264 ENCODE Processing Pipeline 2eab6043fcebbe5f593be2d54f7a1e41 https://www.encodeproject.org/files/ENCFF820XTZ/@@download/ENCFF820XTZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF957YKG bed narrowPeak optimal idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF091FKF, ENCFF679NLN, ENCFF984CKR 50316 ENCODE Processing Pipeline 20272faa2f2f839beb3ed467fe083965 https://www.encodeproject.org/files/ENCFF957YKG/@@download/ENCFF957YKG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF984CKR bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF328RQW, ENCFF764JDZ 7324984 ENCODE Processing Pipeline 5813db76af06bd9b2d6abeb411464766 https://www.encodeproject.org/files/ENCFF984CKR/@@download/ENCFF984CKR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF213NDI bigBed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF984CKR 11254615 ENCODE Processing Pipeline 47d409e19a33ec5b063c8bb5d2ec297a https://www.encodeproject.org/files/ENCFF213NDI/@@download/ENCFF213NDI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF294WHN bigBed narrowPeak conservative idr thresholded peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF432JZQ 102958 ENCODE Processing Pipeline 835ff65fae1faaae25736f9a4f0255af https://www.encodeproject.org/files/ENCFF294WHN/@@download/ENCFF294WHN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF455UQA fastq reads ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 1 ENCFF714KWX 1592632022 Michael Snyder, Stanford a2a6fa2d372c7029ad41cd55c128e9a3 SRA:SRR5112090 https://www.encodeproject.org/files/ENCFF455UQA/@@download/ENCFF455UQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF714KWX fastq reads ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 2 ENCFF455UQA 1655190830 Michael Snyder, Stanford 751c115cf10c8e189f318212e3caa0aa SRA:SRR5112090 https://www.encodeproject.org/files/ENCFF714KWX/@@download/ENCFF714KWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF268XRY fastq reads ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 1 100 paired-ended 1 ENCFF642TLW 1844696191 Michael Snyder, Stanford 4932de7a42048cb3dd2c793d5ee67ce1 SRA:SRR5112091 https://www.encodeproject.org/files/ENCFF268XRY/@@download/ENCFF268XRY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF642TLW fastq reads ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 1 100 paired-ended 2 ENCFF268XRY 1914533310 Michael Snyder, Stanford eb0a2c37f52b8628f44d7783b1a4f197 SRA:SRR5112091 https://www.encodeproject.org/files/ENCFF642TLW/@@download/ENCFF642TLW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF246WTN bam unfiltered alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF455UQA, ENCFF714KWX, ENCFF807MUK 3557652207 ENCODE Processing Pipeline 1f2a4c921c410907868c86fec0a0c239 https://www.encodeproject.org/files/ENCFF246WTN/@@download/ENCFF246WTN.bam hg19 released low read depth ENCFF059UBN bam unfiltered alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF455UQA, ENCFF643CGH, ENCFF714KWX 3560028918 ENCODE Processing Pipeline 0d5452477056a1748f8e4f7b327a2491 https://www.encodeproject.org/files/ENCFF059UBN/@@download/ENCFF059UBN.bam GRCh38 released low read depth ENCFF239BDK bam unfiltered alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF268XRY, ENCFF642TLW, ENCFF807MUK 4074020378 ENCODE Processing Pipeline 62d007fcd13b654d79b011b86cdc29e2 https://www.encodeproject.org/files/ENCFF239BDK/@@download/ENCFF239BDK.bam hg19 released low read depth ENCFF694HJF bam unfiltered alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF268XRY, ENCFF642TLW, ENCFF643CGH 4076790612 ENCODE Processing Pipeline 17940750749b6fb1fd4bfa1d32ad1f0a https://www.encodeproject.org/files/ENCFF694HJF/@@download/ENCFF694HJF.bam GRCh38 released low read depth ENCFF690CWG bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF268XRY, ENCFF642TLW, ENCFF807MUK 3318211048 ENCODE Processing Pipeline b28f764a8693e61bb0fc192f28d10c51 https://www.encodeproject.org/files/ENCFF690CWG/@@download/ENCFF690CWG.bam hg19 released low read depth ENCFF411PRP bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF455UQA, ENCFF714KWX, ENCFF807MUK 2929738879 ENCODE Processing Pipeline 57865b66061b4d2a9bf47c96f32ce65d https://www.encodeproject.org/files/ENCFF411PRP/@@download/ENCFF411PRP.bam hg19 released low read depth ENCFF072KEJ bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF268XRY, ENCFF642TLW, ENCFF643CGH 3320931923 ENCODE Processing Pipeline e6cb9fa4c68ecc8dc2c6fb9e23d74d82 https://www.encodeproject.org/files/ENCFF072KEJ/@@download/ENCFF072KEJ.bam GRCh38 released low read depth ENCFF033JFM bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF455UQA, ENCFF643CGH, ENCFF714KWX 2931511017 ENCODE Processing Pipeline 3a4540f9e0b9d8f043c821129614407b https://www.encodeproject.org/files/ENCFF033JFM/@@download/ENCFF033JFM.bam GRCh38 released low read depth ENCFF268RNI bigWig signal p-value ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF411PRP, ENCFF581ZJL 1054654074 ENCODE Processing Pipeline d5c586a01646c87e70a186ea5068ef40 https://www.encodeproject.org/files/ENCFF268RNI/@@download/ENCFF268RNI.bigWig hg19 released low read depth ENCFF259SKO bigWig signal p-value ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF051LWI, ENCFF690CWG 1118906805 ENCODE Processing Pipeline ed42e0ef24a792a7bf6a983de5057e4f https://www.encodeproject.org/files/ENCFF259SKO/@@download/ENCFF259SKO.bigWig hg19 released low read depth ENCFF357TSR bigWig signal p-value ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF051LWI, ENCFF411PRP, ENCFF581ZJL, ENCFF690CWG 1870179718 ENCODE Processing Pipeline 8f449ebe2985511fb6c62775c1aab6a6 https://www.encodeproject.org/files/ENCFF357TSR/@@download/ENCFF357TSR.bigWig hg19 released low read depth ENCFF034NZW bigWig fold change over control ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF411PRP, ENCFF581ZJL 954208367 ENCODE Processing Pipeline 71417175a14dd82019013671f0869065 https://www.encodeproject.org/files/ENCFF034NZW/@@download/ENCFF034NZW.bigWig hg19 released low read depth ENCFF468DEE bigWig fold change over control ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF051LWI, ENCFF690CWG 983320466 ENCODE Processing Pipeline 776d150a00caa32103026fced7ab7d27 https://www.encodeproject.org/files/ENCFF468DEE/@@download/ENCFF468DEE.bigWig hg19 released low read depth ENCFF733BAD bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF051LWI, ENCFF690CWG 6810880 ENCODE Processing Pipeline 1099a7eba7de19b93fa68046112910e4 https://www.encodeproject.org/files/ENCFF733BAD/@@download/ENCFF733BAD.bed.gz hg19 released low read depth ENCFF649STG bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF051LWI, ENCFF411PRP, ENCFF581ZJL, ENCFF690CWG 7225762 ENCODE Processing Pipeline d3445bb552d890141b649942e051b032 https://www.encodeproject.org/files/ENCFF649STG/@@download/ENCFF649STG.bed.gz hg19 released low read depth ENCFF412XOO bigBed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF733BAD 13286752 ENCODE Processing Pipeline de5bedd9b46811337f4506c71c495a2f https://www.encodeproject.org/files/ENCFF412XOO/@@download/ENCFF412XOO.bigBed hg19 released low read depth ENCFF535HME bigBed narrowPeak optimal idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF366UBB 1057880 ENCODE Processing Pipeline 39b3d16fd51552bb594d0d159c4d89fb https://www.encodeproject.org/files/ENCFF535HME/@@download/ENCFF535HME.bigBed hg19 released low read depth ENCFF202DLT bigBed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF810EAC 13228422 ENCODE Processing Pipeline a97b3a18a9d69b9629466b6baf843d0b https://www.encodeproject.org/files/ENCFF202DLT/@@download/ENCFF202DLT.bigBed hg19 released low read depth ENCFF211OZC bigWig fold change over control ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF051LWI, ENCFF411PRP, ENCFF581ZJL, ENCFF690CWG 1858187980 ENCODE Processing Pipeline 47dcb96e8d9e1ccb86d8b9b4cfd09004 https://www.encodeproject.org/files/ENCFF211OZC/@@download/ENCFF211OZC.bigWig hg19 released low read depth ENCFF810EAC bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF411PRP, ENCFF581ZJL 6721746 ENCODE Processing Pipeline 5cc4b114acb6825cc1974b8168d3c37e https://www.encodeproject.org/files/ENCFF810EAC/@@download/ENCFF810EAC.bed.gz hg19 released low read depth ENCFF383XBY bigBed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF649STG 13140423 ENCODE Processing Pipeline eea6e663539b1d3803449f30783df316 https://www.encodeproject.org/files/ENCFF383XBY/@@download/ENCFF383XBY.bigBed hg19 released low read depth ENCFF366UBB bed narrowPeak optimal idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF649STG, ENCFF733BAD, ENCFF810EAC 523344 ENCODE Processing Pipeline b70248917b378e34aa1952f19b956f77 https://www.encodeproject.org/files/ENCFF366UBB/@@download/ENCFF366UBB.bed.gz hg19 released low read depth ENCFF098XOZ bed narrowPeak conservative idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF649STG, ENCFF733BAD, ENCFF810EAC 448046 ENCODE Processing Pipeline c4dcbcdc941c978113d733fb61f5d29c https://www.encodeproject.org/files/ENCFF098XOZ/@@download/ENCFF098XOZ.bed.gz hg19 released low read depth ENCFF306SLO bigBed narrowPeak conservative idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF098XOZ 944007 ENCODE Processing Pipeline 87a7de851704c7f36df0a165b6e030eb https://www.encodeproject.org/files/ENCFF306SLO/@@download/ENCFF306SLO.bigBed hg19 released low read depth ENCFF623VCR bigWig signal p-value ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF033JFM, ENCFF910IKB 943773278 ENCODE Processing Pipeline 2cd214a4f032ec3966678d8ac4b2c6d1 https://www.encodeproject.org/files/ENCFF623VCR/@@download/ENCFF623VCR.bigWig GRCh38 released low read depth ENCFF950WOV bigWig signal p-value ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF072KEJ, ENCFF227IZS 933038297 ENCODE Processing Pipeline 9a9c741ca9e2b8d7a3c33955baaf6cad https://www.encodeproject.org/files/ENCFF950WOV/@@download/ENCFF950WOV.bigWig GRCh38 released low read depth ENCFF626JAJ bigWig signal p-value ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF033JFM, ENCFF072KEJ, ENCFF227IZS, ENCFF910IKB 1522828400 ENCODE Processing Pipeline f45582db6377f85d588439c927b13aad https://www.encodeproject.org/files/ENCFF626JAJ/@@download/ENCFF626JAJ.bigWig GRCh38 released low read depth ENCFF389LMM bigWig fold change over control ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF033JFM, ENCFF910IKB 951078888 ENCODE Processing Pipeline 61c578a64ed790636b8051ff5abf5003 https://www.encodeproject.org/files/ENCFF389LMM/@@download/ENCFF389LMM.bigWig GRCh38 released low read depth ENCFF967IQQ bigWig fold change over control ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF072KEJ, ENCFF227IZS 988618414 ENCODE Processing Pipeline 397bfc457d74c75793e20de3e80e4cf8 https://www.encodeproject.org/files/ENCFF967IQQ/@@download/ENCFF967IQQ.bigWig GRCh38 released low read depth ENCFF864EVQ bigWig fold change over control ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF033JFM, ENCFF072KEJ, ENCFF227IZS, ENCFF910IKB 1864090059 ENCODE Processing Pipeline 35571095265b291941385765119eedfc https://www.encodeproject.org/files/ENCFF864EVQ/@@download/ENCFF864EVQ.bigWig GRCh38 released low read depth ENCFF512XHP bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF033JFM, ENCFF072KEJ, ENCFF227IZS, ENCFF910IKB 7127787 ENCODE Processing Pipeline 5c15ab9b57ee3c699a8398c74b74cc69 https://www.encodeproject.org/files/ENCFF512XHP/@@download/ENCFF512XHP.bed.gz GRCh38 released low read depth ENCFF917BXV bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF072KEJ, ENCFF227IZS 6704878 ENCODE Processing Pipeline 73a22a5dd8710492a27107d660700ac2 https://www.encodeproject.org/files/ENCFF917BXV/@@download/ENCFF917BXV.bed.gz GRCh38 released low read depth ENCFF738GOD bigBed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF512XHP 13056030 ENCODE Processing Pipeline ad05a020d8d52d959690f7290cafd902 https://www.encodeproject.org/files/ENCFF738GOD/@@download/ENCFF738GOD.bigBed GRCh38 released low read depth ENCFF150TDO bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF033JFM, ENCFF910IKB 6561010 ENCODE Processing Pipeline f3deb96da0f612c01ee43892b636aa8d https://www.encodeproject.org/files/ENCFF150TDO/@@download/ENCFF150TDO.bed.gz GRCh38 released low read depth ENCFF006WPP bigBed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF917BXV 13284228 ENCODE Processing Pipeline 9b19375ed136e57837cb77d7f7326bc6 https://www.encodeproject.org/files/ENCFF006WPP/@@download/ENCFF006WPP.bigBed GRCh38 released low read depth ENCFF280GSX bigBed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF150TDO 13163444 ENCODE Processing Pipeline 64ad82a053f0a3179fe65e95612a25d1 https://www.encodeproject.org/files/ENCFF280GSX/@@download/ENCFF280GSX.bigBed GRCh38 released low read depth ENCFF028DNS bigBed narrowPeak conservative idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF032MJB 913764 ENCODE Processing Pipeline 1fec6d7da6617aeddf61df88dd712acc https://www.encodeproject.org/files/ENCFF028DNS/@@download/ENCFF028DNS.bigBed GRCh38 released low read depth ENCFF007ZUL bed narrowPeak optimal idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF150TDO, ENCFF419RSJ, ENCFF512XHP, ENCFF917BXV 490433 ENCODE Processing Pipeline 878253b762325dff1663e201db17803c https://www.encodeproject.org/files/ENCFF007ZUL/@@download/ENCFF007ZUL.bed.gz GRCh38 released low read depth ENCFF759UHQ bigBed narrowPeak optimal idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF007ZUL 1011426 ENCODE Processing Pipeline fd083cfcb754f381ca96212183b09a59 https://www.encodeproject.org/files/ENCFF759UHQ/@@download/ENCFF759UHQ.bigBed GRCh38 released low read depth ENCFF032MJB bed narrowPeak conservative idr thresholded peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF150TDO, ENCFF419RSJ, ENCFF512XHP, ENCFF917BXV 424894 ENCODE Processing Pipeline 4827f9e193c2a9aac07eea85936856e9 https://www.encodeproject.org/files/ENCFF032MJB/@@download/ENCFF032MJB.bed.gz GRCh38 released low read depth ENCFF269RXH bam unfiltered alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643ZXX, ENCFF807MUK 2379981976 ENCODE Processing Pipeline 04f083f0b37ee2cdfe17d035a03fcdb1 https://www.encodeproject.org/files/ENCFF269RXH/@@download/ENCFF269RXH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF508TKU bam unfiltered alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF171UDL, ENCFF807MUK 2485801684 ENCODE Processing Pipeline d3a831460fa877d4718a83bb59f043fe https://www.encodeproject.org/files/ENCFF508TKU/@@download/ENCFF508TKU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF643ZXX fastq reads ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 1 50 single-ended 2442016867 Richard Myers, HAIB e29b7c53e9d90145780e6de4dba1baa0 SRA:SRR5339547 https://www.encodeproject.org/files/ENCFF643ZXX/@@download/ENCFF643ZXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF123QZN/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF171UDL fastq reads ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 1 50 single-ended 2497237428 Richard Myers, HAIB da6b8787e8a688bc84747f6fe908dc32 SRA:SRR5339546 https://www.encodeproject.org/files/ENCFF171UDL/@@download/ENCFF171UDL.fastq.gz Illumina HiSeq 2000 /files/ENCFF977SGP/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF018ELX bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF171UDL, ENCFF807MUK 1730151462 ENCODE Processing Pipeline 1df025c6081d5372e58db05f39db84f7 https://www.encodeproject.org/files/ENCFF018ELX/@@download/ENCFF018ELX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF231NPN bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643ZXX, ENCFF807MUK 1657725749 ENCODE Processing Pipeline 42f9a42f57986ed108ee19d84a31567b https://www.encodeproject.org/files/ENCFF231NPN/@@download/ENCFF231NPN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF353UAM bigWig signal p-value ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 850172427 ENCODE Processing Pipeline 6cbcdf10831a13037c551589a940411d https://www.encodeproject.org/files/ENCFF353UAM/@@download/ENCFF353UAM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF700SWH bigWig signal p-value ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF018ELX, ENCFF235CCD 676002025 ENCODE Processing Pipeline e91e58491f4f20a261da253c4273a1ea https://www.encodeproject.org/files/ENCFF700SWH/@@download/ENCFF700SWH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF722HAU bigWig signal p-value ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF018ELX, ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 1147383617 ENCODE Processing Pipeline 6138be68b9e657293e1732ea9da10330 https://www.encodeproject.org/files/ENCFF722HAU/@@download/ENCFF722HAU.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF901NNV bigWig fold change over control ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 1007721106 ENCODE Processing Pipeline bbeb53ba3a77fcffc533dd0e888d80c0 https://www.encodeproject.org/files/ENCFF901NNV/@@download/ENCFF901NNV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF941FGM bigWig fold change over control ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF018ELX, ENCFF235CCD 836713388 ENCODE Processing Pipeline 0978e4ae94579bea4d81881c6a382b3c https://www.encodeproject.org/files/ENCFF941FGM/@@download/ENCFF941FGM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF984NZJ bigWig fold change over control ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF018ELX, ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 1526559027 ENCODE Processing Pipeline 90478727ae098203cffa5dae2935e01c https://www.encodeproject.org/files/ENCFF984NZJ/@@download/ENCFF984NZJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF846YGT bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 6917938 ENCODE Processing Pipeline da9ca8dbb874b2b094e90ef812bee635 https://www.encodeproject.org/files/ENCFF846YGT/@@download/ENCFF846YGT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF044MZF bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF018ELX, ENCFF235CCD 6541951 ENCODE Processing Pipeline 52901ea7efa04a261a8663c35d9b394f https://www.encodeproject.org/files/ENCFF044MZF/@@download/ENCFF044MZF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF727LYG bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF018ELX, ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 7053572 ENCODE Processing Pipeline 72107ad71177e5a33d9cf66532faa662 https://www.encodeproject.org/files/ENCFF727LYG/@@download/ENCFF727LYG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF144IPZ bigBed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF846YGT 13811898 ENCODE Processing Pipeline cda316b7f47c0dda493dd69fa68e7681 https://www.encodeproject.org/files/ENCFF144IPZ/@@download/ENCFF144IPZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF441DPQ bigBed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF044MZF 13638687 ENCODE Processing Pipeline ec181943c27f82e3deb804a5a9fa99b6 https://www.encodeproject.org/files/ENCFF441DPQ/@@download/ENCFF441DPQ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF525OKK bigBed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF727LYG 13743659 ENCODE Processing Pipeline 7a8c58d3b24b8ce18f37abb613382a20 https://www.encodeproject.org/files/ENCFF525OKK/@@download/ENCFF525OKK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF916RJA bam unfiltered alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643CGH, ENCFF643ZXX 2389497024 ENCODE Processing Pipeline d9ccf4b07dc839e0f02fb578f91080f1 https://www.encodeproject.org/files/ENCFF916RJA/@@download/ENCFF916RJA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF991TKR bam unfiltered alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF171UDL, ENCFF643CGH 2497451731 ENCODE Processing Pipeline 26d5c30b7972ca767fe5342e938f9794 https://www.encodeproject.org/files/ENCFF991TKR/@@download/ENCFF991TKR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF910WTA bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643CGH, ENCFF643ZXX 1657720016 ENCODE Processing Pipeline 0748ebac4e559c788a408c941866df76 https://www.encodeproject.org/files/ENCFF910WTA/@@download/ENCFF910WTA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF445BCF bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF171UDL, ENCFF643CGH 1730247156 ENCODE Processing Pipeline 9b2af97658610f11ddb29ba096e0851b https://www.encodeproject.org/files/ENCFF445BCF/@@download/ENCFF445BCF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF076BJE bigWig signal p-value ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200YPH, ENCFF337WHA, ENCFF910WTA 866067999 ENCODE Processing Pipeline 3c3ec4bfd1bb55e12dafc70053bc5b6a https://www.encodeproject.org/files/ENCFF076BJE/@@download/ENCFF076BJE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF926QQE bigWig signal p-value ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF200YPH, ENCFF445BCF 673502403 ENCODE Processing Pipeline d8b588befe16fcbdf6eac431e08ccb36 https://www.encodeproject.org/files/ENCFF926QQE/@@download/ENCFF926QQE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF026IIQ bigWig signal p-value ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF200YPH, ENCFF337WHA, ENCFF445BCF, ENCFF910WTA 1157167082 ENCODE Processing Pipeline 221dbdc43b466605e350749112c3f0cf https://www.encodeproject.org/files/ENCFF026IIQ/@@download/ENCFF026IIQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF982UYD bigWig fold change over control ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200YPH, ENCFF337WHA, ENCFF910WTA 1010254796 ENCODE Processing Pipeline 1906845a09bf0d17c2c73538577ff04f https://www.encodeproject.org/files/ENCFF982UYD/@@download/ENCFF982UYD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF007PVL bigWig fold change over control ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF200YPH, ENCFF445BCF 832845793 ENCODE Processing Pipeline 638615ca36f673ca319d53da064f1dc7 https://www.encodeproject.org/files/ENCFF007PVL/@@download/ENCFF007PVL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF667HOI bigWig fold change over control ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF200YPH, ENCFF337WHA, ENCFF445BCF, ENCFF910WTA 1538303425 ENCODE Processing Pipeline bb03f178c1e35cf3c0178283dc07fcf1 https://www.encodeproject.org/files/ENCFF667HOI/@@download/ENCFF667HOI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF462WPV bigBed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF184KZB 13641348 ENCODE Processing Pipeline 5fb206ee526081300804ba7c5c67fd30 https://www.encodeproject.org/files/ENCFF462WPV/@@download/ENCFF462WPV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF013PVV bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200YPH, ENCFF337WHA, ENCFF910WTA 6768336 ENCODE Processing Pipeline 66f48d92637c1a9bea77986836d08122 https://www.encodeproject.org/files/ENCFF013PVV/@@download/ENCFF013PVV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF184KZB bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF200YPH, ENCFF445BCF 6420495 ENCODE Processing Pipeline c7cc2e139602ed616a5cb14d96abeb5f https://www.encodeproject.org/files/ENCFF184KZB/@@download/ENCFF184KZB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF628MXS bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF200YPH, ENCFF337WHA, ENCFF445BCF, ENCFF910WTA 7025976 ENCODE Processing Pipeline 60cf8e87e980c31a4ebf3189ee54c5bf https://www.encodeproject.org/files/ENCFF628MXS/@@download/ENCFF628MXS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF513QWE bigBed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF013PVV 13724017 ENCODE Processing Pipeline 7cdd2025df468a652e67964122f49a1f https://www.encodeproject.org/files/ENCFF513QWE/@@download/ENCFF513QWE.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF886CCK bigBed narrowPeak conservative idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF208GHS 2047637 ENCODE Processing Pipeline 80a8ebdd930817a8b4867c71f5b19d63 https://www.encodeproject.org/files/ENCFF886CCK/@@download/ENCFF886CCK.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF692UHJ bigBed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF628MXS 13753293 ENCODE Processing Pipeline 0dae24a07c9a330e2a77a948a5467c8b https://www.encodeproject.org/files/ENCFF692UHJ/@@download/ENCFF692UHJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF208GHS bed narrowPeak conservative idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF013PVV, ENCFF184KZB, ENCFF419RSJ, ENCFF628MXS 1013827 ENCODE Processing Pipeline 44878c9e31a9f178619ba7934437f8ba https://www.encodeproject.org/files/ENCFF208GHS/@@download/ENCFF208GHS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF229WFR bed narrowPeak optimal idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF013PVV, ENCFF184KZB, ENCFF419RSJ, ENCFF628MXS 1097826 ENCODE Processing Pipeline d48ae05858854fae5dd9fe37411c3d39 https://www.encodeproject.org/files/ENCFF229WFR/@@download/ENCFF229WFR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF670JLC bigBed narrowPeak optimal idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF229WFR 2168615 ENCODE Processing Pipeline 348efb006379cce60de08bd55411ebe4 https://www.encodeproject.org/files/ENCFF670JLC/@@download/ENCFF670JLC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF863KHC bigBed narrowPeak conservative idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF271YUO 1466088 ENCODE Processing Pipeline 56e6918316ed10fcac0fbe5889cb06cb https://www.encodeproject.org/files/ENCFF863KHC/@@download/ENCFF863KHC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF271YUO bed narrowPeak conservative idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF044MZF, ENCFF727LYG, ENCFF846YGT 926160 ENCODE Processing Pipeline 989469d4691b22d44ece108328fc2bee https://www.encodeproject.org/files/ENCFF271YUO/@@download/ENCFF271YUO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF959HHD bigBed narrowPeak optimal idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF108ZTV 2036469 ENCODE Processing Pipeline 0ae74746ddc2f58122cf36a028fb3a72 https://www.encodeproject.org/files/ENCFF959HHD/@@download/ENCFF959HHD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF108ZTV bed narrowPeak optimal idr thresholded peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF044MZF, ENCFF727LYG, ENCFF846YGT 1008002 ENCODE Processing Pipeline 524494eb4a5d531f9c8a7c43202a4027 https://www.encodeproject.org/files/ENCFF108ZTV/@@download/ENCFF108ZTV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF325MVE bam unfiltered alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 100 ENCFF255DXC, ENCFF383KIY, ENCFF807MUK 5843195345 ENCODE Processing Pipeline afe1e12a479c8fdc49a45531752c3fb7 https://www.encodeproject.org/files/ENCFF325MVE/@@download/ENCFF325MVE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF685VAU bam unfiltered alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 100 ENCFF336PPY, ENCFF514VXT, ENCFF807MUK 6446388521 ENCODE Processing Pipeline a93b0bcf4ab3868916345cf47e63893d https://www.encodeproject.org/files/ENCFF685VAU/@@download/ENCFF685VAU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF514VXT fastq reads ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF336PPY 3252629796 Michael Snyder, Stanford c81a02059e9626c43e995bd787840709 SRA:SRR5111879 https://www.encodeproject.org/files/ENCFF514VXT/@@download/ENCFF514VXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFJ/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF383KIY fastq reads ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF255DXC 2648707974 Michael Snyder, Stanford cfef6b2532e8610bd8d0c30c00fc5eb8 SRA:SRR5111878 https://www.encodeproject.org/files/ENCFF383KIY/@@download/ENCFF383KIY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFO/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF255DXC fastq reads ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF383KIY 2683723697 Michael Snyder, Stanford 7ec7105e38c12bbe0f2435afda363164 SRA:SRR5111878 https://www.encodeproject.org/files/ENCFF255DXC/@@download/ENCFF255DXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFN/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF336PPY fastq reads ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF514VXT 3217393966 Michael Snyder, Stanford 0246b7582c1173eedc6ce415e2196795 SRA:SRR5111879 https://www.encodeproject.org/files/ENCFF336PPY/@@download/ENCFF336PPY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFK/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF008CNQ bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 100 ENCFF336PPY, ENCFF514VXT, ENCFF807MUK 3396712792 ENCODE Processing Pipeline 4748f534b6048be699a27d5e7dde779c https://www.encodeproject.org/files/ENCFF008CNQ/@@download/ENCFF008CNQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF850IFD bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 100 ENCFF255DXC, ENCFF383KIY, ENCFF807MUK 5021370735 ENCODE Processing Pipeline 07d043f9c4eea1cedaa185c3c35ef590 https://www.encodeproject.org/files/ENCFF850IFD/@@download/ENCFF850IFD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF610SJH bigWig signal p-value ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF008CNQ, ENCFF132FAW 994349320 ENCODE Processing Pipeline 6c7d7e2634dde0f8effb69c4565e60eb https://www.encodeproject.org/files/ENCFF610SJH/@@download/ENCFF610SJH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF404ELT bigWig signal p-value ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF231HAE, ENCFF850IFD 1289542053 ENCODE Processing Pipeline 17a98e6cea74b961bf3e58fe9f8cf60a https://www.encodeproject.org/files/ENCFF404ELT/@@download/ENCFF404ELT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF975AFM bigWig signal p-value ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF008CNQ, ENCFF132FAW, ENCFF231HAE, ENCFF850IFD 2138899217 ENCODE Processing Pipeline 1fbaa54756c201e3f9b66098cfe5100f https://www.encodeproject.org/files/ENCFF975AFM/@@download/ENCFF975AFM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF893YQO bigWig fold change over control ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF008CNQ, ENCFF132FAW 1024198634 ENCODE Processing Pipeline ad9f4c4d62d378794b70020a9baf80ac https://www.encodeproject.org/files/ENCFF893YQO/@@download/ENCFF893YQO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF708HJC bigWig fold change over control ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF231HAE, ENCFF850IFD 1313353181 ENCODE Processing Pipeline 66676f4017e375701a7f62e259e3dc3f https://www.encodeproject.org/files/ENCFF708HJC/@@download/ENCFF708HJC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF619ZPZ bigWig fold change over control ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF008CNQ, ENCFF132FAW, ENCFF231HAE, ENCFF850IFD 2143134860 ENCODE Processing Pipeline cf5bd7d903321d15bfb720fc3f4b776e https://www.encodeproject.org/files/ENCFF619ZPZ/@@download/ENCFF619ZPZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF149RTO bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF008CNQ, ENCFF132FAW, ENCFF231HAE, ENCFF850IFD 6912658 ENCODE Processing Pipeline bf6e3a43545b46a72014b9f2f1aef414 https://www.encodeproject.org/files/ENCFF149RTO/@@download/ENCFF149RTO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF607MHD bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF008CNQ, ENCFF132FAW 5768302 ENCODE Processing Pipeline 9eb4aaa343e9f803ba88697c46b66aea https://www.encodeproject.org/files/ENCFF607MHD/@@download/ENCFF607MHD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF312HIY bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF231HAE, ENCFF850IFD 6044308 ENCODE Processing Pipeline ebe12bf0fe74dbbc4732b2be7c5f61ba https://www.encodeproject.org/files/ENCFF312HIY/@@download/ENCFF312HIY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF482UMW bigBed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF607MHD 11382923 ENCODE Processing Pipeline 98aab4c36a323da5a4faa11297adcc8a https://www.encodeproject.org/files/ENCFF482UMW/@@download/ENCFF482UMW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF109LLB bigBed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF149RTO 11249144 ENCODE Processing Pipeline 7e38fa0c5447a3857db4dcf85a4ecfcc https://www.encodeproject.org/files/ENCFF109LLB/@@download/ENCFF109LLB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF999FHH bigBed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF312HIY 11321143 ENCODE Processing Pipeline a7d7d37dad1f927f135ca3d31b9ab12c https://www.encodeproject.org/files/ENCFF999FHH/@@download/ENCFF999FHH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF291TXE bam unfiltered alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 100 ENCFF255DXC, ENCFF383KIY, ENCFF643CGH 5852685062 ENCODE Processing Pipeline 2c7b2d6b480329116ba6d02437234cab https://www.encodeproject.org/files/ENCFF291TXE/@@download/ENCFF291TXE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF161HJC bam unfiltered alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 100 ENCFF336PPY, ENCFF514VXT, ENCFF643CGH 6438185462 ENCODE Processing Pipeline ac9d8ff5d5d793db3da09d05389c6cc1 https://www.encodeproject.org/files/ENCFF161HJC/@@download/ENCFF161HJC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF960WSN bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 100 ENCFF255DXC, ENCFF383KIY, ENCFF643CGH 5023509142 ENCODE Processing Pipeline 6421c53785ac185bc299361bd511de27 https://www.encodeproject.org/files/ENCFF960WSN/@@download/ENCFF960WSN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF913BSN bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 100 ENCFF336PPY, ENCFF514VXT, ENCFF643CGH 3394892754 ENCODE Processing Pipeline bb85413721da7a4c81f9d82c03067543 https://www.encodeproject.org/files/ENCFF913BSN/@@download/ENCFF913BSN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF451FSR bigWig signal p-value ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF586NUV, ENCFF913BSN 1077740228 ENCODE Processing Pipeline 0e177376902a251090e3bd9e2069db92 https://www.encodeproject.org/files/ENCFF451FSR/@@download/ENCFF451FSR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF725QIM bigWig signal p-value ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF386EWJ, ENCFF960WSN 1062916050 ENCODE Processing Pipeline 33eae124c5f897fc0cf448340d9167c3 https://www.encodeproject.org/files/ENCFF725QIM/@@download/ENCFF725QIM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF307NRK bigWig signal p-value ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF386EWJ, ENCFF586NUV, ENCFF913BSN, ENCFF960WSN 1965508348 ENCODE Processing Pipeline 7fc56c1fb73cac09ffe67cb6f06221dc https://www.encodeproject.org/files/ENCFF307NRK/@@download/ENCFF307NRK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF603EEW bigWig fold change over control ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF586NUV, ENCFF913BSN 1046273487 ENCODE Processing Pipeline e47a6631bfabc0e74dcae58e06909788 https://www.encodeproject.org/files/ENCFF603EEW/@@download/ENCFF603EEW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF630LJH bigWig fold change over control ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF386EWJ, ENCFF960WSN 1291474105 ENCODE Processing Pipeline bf5bd006004307efdf684dcc5c99a6f3 https://www.encodeproject.org/files/ENCFF630LJH/@@download/ENCFF630LJH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF538PUA bigWig fold change over control ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF386EWJ, ENCFF586NUV, ENCFF913BSN, ENCFF960WSN 2166788103 ENCODE Processing Pipeline 4f59d2e86fe8c3882d91f2461c0e9226 https://www.encodeproject.org/files/ENCFF538PUA/@@download/ENCFF538PUA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF537PGX bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF386EWJ, ENCFF960WSN 5849523 ENCODE Processing Pipeline cd63d8df19973169cd40f332746a808f https://www.encodeproject.org/files/ENCFF537PGX/@@download/ENCFF537PGX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF417EEN bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF386EWJ, ENCFF586NUV, ENCFF913BSN, ENCFF960WSN 6851704 ENCODE Processing Pipeline 984b8ab3d2a77c852ab60428c5fb10d2 https://www.encodeproject.org/files/ENCFF417EEN/@@download/ENCFF417EEN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF778HGF bigBed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF537PGX 11312765 ENCODE Processing Pipeline 70a6e8d4781a741ded1bbffed08e721c https://www.encodeproject.org/files/ENCFF778HGF/@@download/ENCFF778HGF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF569CWX bigBed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF417EEN 11268290 ENCODE Processing Pipeline 978a1f7b5943527b730c98e47e0a65f7 https://www.encodeproject.org/files/ENCFF569CWX/@@download/ENCFF569CWX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF161ZYQ bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF586NUV, ENCFF913BSN 5585792 ENCODE Processing Pipeline 4a275699f8834071febf917b01b30108 https://www.encodeproject.org/files/ENCFF161ZYQ/@@download/ENCFF161ZYQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF927MYX bigBed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF161ZYQ 11372383 ENCODE Processing Pipeline a187f30b30a98bcea0616e8cc9744921 https://www.encodeproject.org/files/ENCFF927MYX/@@download/ENCFF927MYX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF030TJV bigBed narrowPeak conservative idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF678AUZ 71177 ENCODE Processing Pipeline 658603807dd2f73cac8f991e8995d07b https://www.encodeproject.org/files/ENCFF030TJV/@@download/ENCFF030TJV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF678AUZ bed narrowPeak conservative idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF161ZYQ, ENCFF417EEN, ENCFF419RSJ, ENCFF537PGX 10744 ENCODE Processing Pipeline f0840c19b626897a39b191cf44177046 https://www.encodeproject.org/files/ENCFF678AUZ/@@download/ENCFF678AUZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF337ZPN bigBed narrowPeak optimal idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF834LQR 96982 ENCODE Processing Pipeline 92e63c356a0610f1ceed7351edac095c https://www.encodeproject.org/files/ENCFF337ZPN/@@download/ENCFF337ZPN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF834LQR bed narrowPeak optimal idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF161ZYQ, ENCFF417EEN, ENCFF419RSJ, ENCFF537PGX 26101 ENCODE Processing Pipeline ff7063e798fa5d509cd0adedd649c6bd https://www.encodeproject.org/files/ENCFF834LQR/@@download/ENCFF834LQR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF675ZHC bed narrowPeak optimal idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF149RTO, ENCFF312HIY, ENCFF607MHD 19622 ENCODE Processing Pipeline 9c7c4f4820d59882e08fa26874ded8ba https://www.encodeproject.org/files/ENCFF675ZHC/@@download/ENCFF675ZHC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF889JSY bigBed narrowPeak optimal idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF675ZHC 72840 ENCODE Processing Pipeline 673d437fce3bccdc949fb2beb97139c0 https://www.encodeproject.org/files/ENCFF889JSY/@@download/ENCFF889JSY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF971NUS bed narrowPeak conservative idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF149RTO, ENCFF312HIY, ENCFF607MHD 8565 ENCODE Processing Pipeline 3692644f388eb2488af06a4def6b8221 https://www.encodeproject.org/files/ENCFF971NUS/@@download/ENCFF971NUS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF990YGU bigBed narrowPeak conservative idr thresholded peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF971NUS 57362 ENCODE Processing Pipeline d6e99ed47cf6ed7375465ab1a76d3472 https://www.encodeproject.org/files/ENCFF990YGU/@@download/ENCFF990YGU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF025KYE bam unfiltered alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 50 ENCFF548OMB, ENCFF611RZZ, ENCFF807MUK 1064750073 ENCODE Processing Pipeline ede6da0a597b86b05446e7423f1d0e24 https://www.encodeproject.org/files/ENCFF025KYE/@@download/ENCFF025KYE.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF556XPI bam unfiltered alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 50 ENCFF097AUF, ENCFF680CYZ, ENCFF807MUK 1590063804 ENCODE Processing Pipeline 0bcc3b7edc5d49ff12feda998d10247a https://www.encodeproject.org/files/ENCFF556XPI/@@download/ENCFF556XPI.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF548OMB fastq reads ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 1 50 single-ended 453038583 Kevin White, UChicago 807afb21d3b6b89cfd504aec0ab02923 SRA:SRR6212695 https://www.encodeproject.org/files/ENCFF548OMB/@@download/ENCFF548OMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF608KKT/ released control low read depth, low read depth, missing genetic modification characterization ENCFF097AUF fastq reads ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 1 50 single-ended 578116937 Kevin White, UChicago 9d68c31dfb4387e2af8c4d4751f33605 SRA:SRR6212693 https://www.encodeproject.org/files/ENCFF097AUF/@@download/ENCFF097AUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF608KKT/ released control low read depth, low read depth, missing genetic modification characterization ENCFF611RZZ fastq reads ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 1 50 single-ended 507353058 Kevin White, UChicago f3ac50970b0343e007e72fddf919cf75 SRA:SRR6212696 https://www.encodeproject.org/files/ENCFF611RZZ/@@download/ENCFF611RZZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF608KKT/ released control low read depth, low read depth, missing genetic modification characterization ENCFF680CYZ fastq reads ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 1 50 single-ended 871965459 Kevin White, UChicago bcf91cd59deb61d8f289ed55ab7baa14 SRA:SRR6212694 https://www.encodeproject.org/files/ENCFF680CYZ/@@download/ENCFF680CYZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF608KKT/ released control low read depth, low read depth, missing genetic modification characterization ENCFF544NMW bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 50 ENCFF097AUF, ENCFF680CYZ, ENCFF807MUK 1244037834 ENCODE Processing Pipeline e6722851bffe09c345581ffd455f7d4c https://www.encodeproject.org/files/ENCFF544NMW/@@download/ENCFF544NMW.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF812ESP bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 50 ENCFF548OMB, ENCFF611RZZ, ENCFF807MUK 831253526 ENCODE Processing Pipeline abf1fc61b258ccf667db45a4d2a212d1 https://www.encodeproject.org/files/ENCFF812ESP/@@download/ENCFF812ESP.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF108HYZ bigWig signal p-value ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF005EDF, ENCFF544NMW, ENCFF812ESP 420457509 ENCODE Processing Pipeline 6265a761ef75c638d092889b04eb8aa5 https://www.encodeproject.org/files/ENCFF108HYZ/@@download/ENCFF108HYZ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF692TTD bigWig signal p-value ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF005EDF, ENCFF544NMW 419300141 ENCODE Processing Pipeline 021680f4d8633162dd551e9704a077b0 https://www.encodeproject.org/files/ENCFF692TTD/@@download/ENCFF692TTD.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF981DPM bigWig fold change over control ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF005EDF, ENCFF812ESP 402883801 ENCODE Processing Pipeline 0e3f66094a85668091dd269a35256b19 https://www.encodeproject.org/files/ENCFF981DPM/@@download/ENCFF981DPM.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF520KCD bigWig signal p-value ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF005EDF, ENCFF812ESP 407164602 ENCODE Processing Pipeline 377ed92e7657cc146bd81f6850ef566e https://www.encodeproject.org/files/ENCFF520KCD/@@download/ENCFF520KCD.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF825JVK bigWig fold change over control ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF005EDF, ENCFF544NMW 531787373 ENCODE Processing Pipeline c9b85f28b0febcd87258a3b35929589d https://www.encodeproject.org/files/ENCFF825JVK/@@download/ENCFF825JVK.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF189LJG bigBed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF328SGB 13224787 ENCODE Processing Pipeline 8004d1ea2f17552f01ecdc0863b9b028 https://www.encodeproject.org/files/ENCFF189LJG/@@download/ENCFF189LJG.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF013EQH bigWig fold change over control ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF005EDF, ENCFF544NMW, ENCFF812ESP 749961537 ENCODE Processing Pipeline 001d3c617113145f9dc5674314674dd6 https://www.encodeproject.org/files/ENCFF013EQH/@@download/ENCFF013EQH.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF517BWM bed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF005EDF, ENCFF544NMW 5856729 ENCODE Processing Pipeline 12e3c7a9a5c149560f95023445c2fd7b https://www.encodeproject.org/files/ENCFF517BWM/@@download/ENCFF517BWM.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF207TBA bigBed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF517BWM 13252794 ENCODE Processing Pipeline abe5a37107a9a7148027577700aad8db https://www.encodeproject.org/files/ENCFF207TBA/@@download/ENCFF207TBA.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF667SOI bed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF005EDF, ENCFF544NMW, ENCFF812ESP 6300579 ENCODE Processing Pipeline fd7798441e92f851adf6179fdd98bf4a https://www.encodeproject.org/files/ENCFF667SOI/@@download/ENCFF667SOI.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF328SGB bed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF005EDF, ENCFF812ESP 5669935 ENCODE Processing Pipeline 4df2b24c3e7b7250794fd20d5d620aa4 https://www.encodeproject.org/files/ENCFF328SGB/@@download/ENCFF328SGB.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF994JVL bigBed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF667SOI 13056042 ENCODE Processing Pipeline 47aad17dc9f104ac75b930fb7d1c78bf https://www.encodeproject.org/files/ENCFF994JVL/@@download/ENCFF994JVL.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF899BOT bam unfiltered alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 50 ENCFF548OMB, ENCFF611RZZ, ENCFF643CGH 1069140500 ENCODE Processing Pipeline 4a52d91cb7dfd16a94d6817cd3a5b178 https://www.encodeproject.org/files/ENCFF899BOT/@@download/ENCFF899BOT.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF420ZDV bam unfiltered alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 50 ENCFF097AUF, ENCFF643CGH, ENCFF680CYZ 1597205385 ENCODE Processing Pipeline 51aec1a6ae63d34147c6fe78a98e10ee https://www.encodeproject.org/files/ENCFF420ZDV/@@download/ENCFF420ZDV.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF856JMS bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 50 ENCFF548OMB, ENCFF611RZZ, ENCFF643CGH 830961091 ENCODE Processing Pipeline 743a21927acc1c12fb344c8a9a692448 https://www.encodeproject.org/files/ENCFF856JMS/@@download/ENCFF856JMS.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF692CNT bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 50 ENCFF097AUF, ENCFF643CGH, ENCFF680CYZ 1243752155 ENCODE Processing Pipeline f09282d8748b5986755ca530f4869d46 https://www.encodeproject.org/files/ENCFF692CNT/@@download/ENCFF692CNT.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF299RUL bigWig signal p-value ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF856JMS, ENCFF938UEI 406820482 ENCODE Processing Pipeline 8e1e2c4aee7853587918976860ceb4bf https://www.encodeproject.org/files/ENCFF299RUL/@@download/ENCFF299RUL.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF705ERO bigWig signal p-value ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF692CNT, ENCFF938UEI 420249055 ENCODE Processing Pipeline fb4d4c534eed8f4313a731f65a804097 https://www.encodeproject.org/files/ENCFF705ERO/@@download/ENCFF705ERO.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF835DRX bigWig signal p-value ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF692CNT, ENCFF856JMS, ENCFF938UEI 416918415 ENCODE Processing Pipeline f7130f73210256f81cacea87d51393e1 https://www.encodeproject.org/files/ENCFF835DRX/@@download/ENCFF835DRX.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF741JAT bigWig fold change over control ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF856JMS, ENCFF938UEI 400913740 ENCODE Processing Pipeline 92cd6cdcd31324ad25a21950d9603c5d https://www.encodeproject.org/files/ENCFF741JAT/@@download/ENCFF741JAT.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF764OEC bigWig fold change over control ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF692CNT, ENCFF856JMS, ENCFF938UEI 746176081 ENCODE Processing Pipeline 33f14cc4b013c888cf660674ef5e5d9a https://www.encodeproject.org/files/ENCFF764OEC/@@download/ENCFF764OEC.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF497KCR bigWig fold change over control ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF692CNT, ENCFF938UEI 531728097 ENCODE Processing Pipeline e3809bf6ed57354116dc6c32a5852a95 https://www.encodeproject.org/files/ENCFF497KCR/@@download/ENCFF497KCR.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF760IUO bed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF692CNT, ENCFF856JMS, ENCFF938UEI 6070847 ENCODE Processing Pipeline a4550cf6f8cd1e342e0132ccc7eba863 https://www.encodeproject.org/files/ENCFF760IUO/@@download/ENCFF760IUO.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF954PDP bed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF692CNT, ENCFF938UEI 5569815 ENCODE Processing Pipeline f3a09645daf40debb09115c29084a739 https://www.encodeproject.org/files/ENCFF954PDP/@@download/ENCFF954PDP.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF188KJL bigBed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF984QST 13161473 ENCODE Processing Pipeline 0878a3cbc822e60b7c2c56b56ebc8a40 https://www.encodeproject.org/files/ENCFF188KJL/@@download/ENCFF188KJL.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF984QST bed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 ENCFF856JMS, ENCFF938UEI 5357327 ENCODE Processing Pipeline 7c0bfeb63da53a251435764625f9e39b https://www.encodeproject.org/files/ENCFF984QST/@@download/ENCFF984QST.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF437BWV bigBed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF760IUO 13040404 ENCODE Processing Pipeline 9eb79d459b77ab333be61d824ea25659 https://www.encodeproject.org/files/ENCFF437BWV/@@download/ENCFF437BWV.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF119MJI bigBed narrowPeak peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 ENCFF954PDP 13213453 ENCODE Processing Pipeline fe82c0553b994d6e7d49405a0b8b83c9 https://www.encodeproject.org/files/ENCFF119MJI/@@download/ENCFF119MJI.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF891BPE bed narrowPeak optimal idr thresholded peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF419RSJ, ENCFF760IUO, ENCFF954PDP, ENCFF984QST 343020 ENCODE Processing Pipeline 2a86d7ffc11b246d171655d8a4b1d12d https://www.encodeproject.org/files/ENCFF891BPE/@@download/ENCFF891BPE.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF508NCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF891BPE 697691 ENCODE Processing Pipeline 8af5cb8bff0b48c737af7e06c1fed036 https://www.encodeproject.org/files/ENCFF508NCZ/@@download/ENCFF508NCZ.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF258KFV bigBed narrowPeak optimal idr thresholded peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF173VKA 622511 ENCODE Processing Pipeline dcf5eeaf7385dda2aea5336b9fbecfec https://www.encodeproject.org/files/ENCFF258KFV/@@download/ENCFF258KFV.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF173VKA bed narrowPeak optimal idr thresholded peaks ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3, 4 ENCFF001TDO, ENCFF328SGB, ENCFF517BWM, ENCFF667SOI 295179 ENCODE Processing Pipeline 458c3469b2c62eeda6604910e45cbd66 https://www.encodeproject.org/files/ENCFF173VKA/@@download/ENCFF173VKA.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF643VJS fastq reads ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF961ECZ 2518344443 Michael Snyder, Stanford 2ce507334e920fec531443106c234661 SRA:SRR6213920 https://www.encodeproject.org/files/ENCFF643VJS/@@download/ENCFF643VJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF961ECZ fastq reads ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF643VJS 2594621149 Michael Snyder, Stanford 30f9015d256d77d11c98053837d64ca2 SRA:SRR6213920 https://www.encodeproject.org/files/ENCFF961ECZ/@@download/ENCFF961ECZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF627SNU fastq reads ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF559LBE 3027753842 Michael Snyder, Stanford 21187752a75c4840adb22ea3391530af SRA:SRR6213919 https://www.encodeproject.org/files/ENCFF627SNU/@@download/ENCFF627SNU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF559LBE fastq reads ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF627SNU 3119577675 Michael Snyder, Stanford d60c1bbecd20cf7cea7ef9e072113028 SRA:SRR6213919 https://www.encodeproject.org/files/ENCFF559LBE/@@download/ENCFF559LBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF339MCX bam unfiltered alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF559LBE, ENCFF627SNU, ENCFF643CGH 6642948396 ENCODE Processing Pipeline 293d81dabbe83761e1cf78e99112473e https://www.encodeproject.org/files/ENCFF339MCX/@@download/ENCFF339MCX.bam GRCh38 released ENCFF287NGJ bam unfiltered alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643CGH, ENCFF643VJS, ENCFF961ECZ 5617727532 ENCODE Processing Pipeline 8e83d2802ef1c4809a51a22ebdb5af76 https://www.encodeproject.org/files/ENCFF287NGJ/@@download/ENCFF287NGJ.bam GRCh38 released ENCFF072JHV bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643CGH, ENCFF643VJS, ENCFF961ECZ 4394718202 ENCODE Processing Pipeline 5e78fb113c2cb23d91d71547fa60214f https://www.encodeproject.org/files/ENCFF072JHV/@@download/ENCFF072JHV.bam GRCh38 released ENCFF948EKK bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF559LBE, ENCFF627SNU, ENCFF643CGH 5129845068 ENCODE Processing Pipeline aa7a8d79865694c9b8b12fbab4d8c397 https://www.encodeproject.org/files/ENCFF948EKK/@@download/ENCFF948EKK.bam GRCh38 released ENCFF303JHO bigWig signal p-value ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF072JHV, ENCFF426RDP 1035597881 ENCODE Processing Pipeline 7903207fda31870e6b2e74148bce0f3c https://www.encodeproject.org/files/ENCFF303JHO/@@download/ENCFF303JHO.bigWig GRCh38 released ENCFF265SIB bigWig signal p-value ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF948EKK 1177176910 ENCODE Processing Pipeline 8ca22ad09b4acd0ebb7c768ea52768cf https://www.encodeproject.org/files/ENCFF265SIB/@@download/ENCFF265SIB.bigWig GRCh38 released ENCFF521OPC bigWig signal p-value ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF072JHV, ENCFF291AFY, ENCFF426RDP, ENCFF948EKK 1645383971 ENCODE Processing Pipeline 9c3befe84733df741751cb2397f0d162 https://www.encodeproject.org/files/ENCFF521OPC/@@download/ENCFF521OPC.bigWig GRCh38 released ENCFF244UHH bigWig fold change over control ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF072JHV, ENCFF426RDP 1061276350 ENCODE Processing Pipeline 51baf29fcbe3125566d8956db1289b16 https://www.encodeproject.org/files/ENCFF244UHH/@@download/ENCFF244UHH.bigWig GRCh38 released ENCFF431XBT bigWig fold change over control ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF948EKK 1199174415 ENCODE Processing Pipeline ea1d7f5bcf88dbec359bae050834bfad https://www.encodeproject.org/files/ENCFF431XBT/@@download/ENCFF431XBT.bigWig GRCh38 released ENCFF095RDM bigWig fold change over control ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF072JHV, ENCFF291AFY, ENCFF426RDP, ENCFF948EKK 2069640420 ENCODE Processing Pipeline f25d1b09560d503fd69e30c3936135c4 https://www.encodeproject.org/files/ENCFF095RDM/@@download/ENCFF095RDM.bigWig GRCh38 released ENCFF903ZSC bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF072JHV, ENCFF426RDP 6303887 ENCODE Processing Pipeline abdc179218a5b3cbec973566ced038c5 https://www.encodeproject.org/files/ENCFF903ZSC/@@download/ENCFF903ZSC.bed.gz GRCh38 released ENCFF181DPW bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF948EKK 6661360 ENCODE Processing Pipeline 0b32867797f2b6544690fd2891c4fc2d https://www.encodeproject.org/files/ENCFF181DPW/@@download/ENCFF181DPW.bed.gz GRCh38 released ENCFF755SCN bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF072JHV, ENCFF291AFY, ENCFF426RDP, ENCFF948EKK 7188929 ENCODE Processing Pipeline 98bb0b5c3a03e9d8c1e3616352f74286 https://www.encodeproject.org/files/ENCFF755SCN/@@download/ENCFF755SCN.bed.gz GRCh38 released ENCFF985WII bigBed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF903ZSC 13397273 ENCODE Processing Pipeline a66e416c29b55020c39c6bb6eef91d73 https://www.encodeproject.org/files/ENCFF985WII/@@download/ENCFF985WII.bigBed GRCh38 released ENCFF486BBD bigBed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF181DPW 13394422 ENCODE Processing Pipeline 11aebaeed1b991051864f2e9e2173cc1 https://www.encodeproject.org/files/ENCFF486BBD/@@download/ENCFF486BBD.bigBed GRCh38 released ENCFF257DKQ bigBed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF755SCN 13403486 ENCODE Processing Pipeline 636ce16ed0b589903a35f0f7230c37ed https://www.encodeproject.org/files/ENCFF257DKQ/@@download/ENCFF257DKQ.bigBed GRCh38 released ENCFF979WIC bed narrowPeak conservative idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF181DPW, ENCFF419RSJ, ENCFF755SCN, ENCFF903ZSC 341442 ENCODE Processing Pipeline 251148203a7ba8099fbda033e7aa484a https://www.encodeproject.org/files/ENCFF979WIC/@@download/ENCFF979WIC.bed.gz GRCh38 released ENCFF369XXU bigBed narrowPeak conservative idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF979WIC 680368 ENCODE Processing Pipeline 35bb6728cee61235a5fb4dc6088f0e86 https://www.encodeproject.org/files/ENCFF369XXU/@@download/ENCFF369XXU.bigBed GRCh38 released ENCFF519XTN bed narrowPeak optimal idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF181DPW, ENCFF419RSJ, ENCFF755SCN, ENCFF903ZSC 427254 ENCODE Processing Pipeline a73c701605523a49a94b3b5c800a01df https://www.encodeproject.org/files/ENCFF519XTN/@@download/ENCFF519XTN.bed.gz GRCh38 released ENCFF699IVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF519XTN 799346 ENCODE Processing Pipeline 65e9b1382d60e3631ef0f4a9ecea341e https://www.encodeproject.org/files/ENCFF699IVQ/@@download/ENCFF699IVQ.bigBed GRCh38 released ENCFF206IHV bam unfiltered alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643VJS, ENCFF807MUK, ENCFF961ECZ 5610519751 ENCODE Processing Pipeline 73838d932ebb0f5d57692c4347f07c8b https://www.encodeproject.org/files/ENCFF206IHV/@@download/ENCFF206IHV.bam hg19 released ENCFF898YGW bam unfiltered alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF559LBE, ENCFF627SNU, ENCFF807MUK 6635516650 ENCODE Processing Pipeline 096183d09e3a6b44474660db2ec7c029 https://www.encodeproject.org/files/ENCFF898YGW/@@download/ENCFF898YGW.bam hg19 released ENCFF146NJI bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF559LBE, ENCFF627SNU, ENCFF807MUK 5122963769 ENCODE Processing Pipeline 97ef58cfa9b0a5ddb7686195c2df8840 https://www.encodeproject.org/files/ENCFF146NJI/@@download/ENCFF146NJI.bam hg19 released ENCFF952LEG bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643VJS, ENCFF807MUK, ENCFF961ECZ 4388039662 ENCODE Processing Pipeline b71c426c57c8d9a40303e3847ecad44f https://www.encodeproject.org/files/ENCFF952LEG/@@download/ENCFF952LEG.bam hg19 released ENCFF346QRC bigWig signal p-value ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF952LEG 1133571096 ENCODE Processing Pipeline 10fa4f371c5ff58814dd1276a7d1c982 https://www.encodeproject.org/files/ENCFF346QRC/@@download/ENCFF346QRC.bigWig hg19 released ENCFF091ACR bigWig fold change over control ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF952LEG 1038407770 ENCODE Processing Pipeline 43ebaadbdc43fb4ad34d031c021e55e1 https://www.encodeproject.org/files/ENCFF091ACR/@@download/ENCFF091ACR.bigWig hg19 released ENCFF081YIR bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF952LEG 6296567 ENCODE Processing Pipeline 4f4d00a21826bc04487dbcdd6fac150e https://www.encodeproject.org/files/ENCFF081YIR/@@download/ENCFF081YIR.bed.gz hg19 released ENCFF525LJK bigBed narrowPeak conservative idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF754GUJ 672270 ENCODE Processing Pipeline b48c885e59f40877104e4262a60542ca https://www.encodeproject.org/files/ENCFF525LJK/@@download/ENCFF525LJK.bigBed hg19 released ENCFF782KJU bigWig fold change over control ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF146NJI 1200949136 ENCODE Processing Pipeline 3de894af71a24ad39bf7628ac7018088 https://www.encodeproject.org/files/ENCFF782KJU/@@download/ENCFF782KJU.bigWig hg19 released ENCFF046EOR bigBed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF081YIR 13379094 ENCODE Processing Pipeline 1f4b75a1665c4533a65a43d9a4ae3142 https://www.encodeproject.org/files/ENCFF046EOR/@@download/ENCFF046EOR.bigBed hg19 released ENCFF529ZXD bigBed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF833GDZ 13409439 ENCODE Processing Pipeline 280cc45ca51482c4fc18d6e464fbd3c6 https://www.encodeproject.org/files/ENCFF529ZXD/@@download/ENCFF529ZXD.bigBed hg19 released ENCFF247KIL bigWig signal p-value ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF146NJI, ENCFF583FAG, ENCFF952LEG 1522254469 ENCODE Processing Pipeline 14a627913c75d883e41631135839ea86 https://www.encodeproject.org/files/ENCFF247KIL/@@download/ENCFF247KIL.bigWig hg19 released ENCFF801HFU bigWig fold change over control ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF146NJI, ENCFF583FAG, ENCFF952LEG 2029723529 ENCODE Processing Pipeline 15bba6a0b59ffec165349acea86644d6 https://www.encodeproject.org/files/ENCFF801HFU/@@download/ENCFF801HFU.bigWig hg19 released ENCFF522QAT bigBed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF921PXY 13394684 ENCODE Processing Pipeline d1aeed8371cf0034fa517a19a58c09f8 https://www.encodeproject.org/files/ENCFF522QAT/@@download/ENCFF522QAT.bigBed hg19 released ENCFF754GUJ bed narrowPeak conservative idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF081YIR, ENCFF833GDZ, ENCFF921PXY 336644 ENCODE Processing Pipeline db969b2d2bb9d91b769e971430581208 https://www.encodeproject.org/files/ENCFF754GUJ/@@download/ENCFF754GUJ.bed.gz hg19 released ENCFF991KHM bigBed narrowPeak optimal idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF817RST 797488 ENCODE Processing Pipeline dad3a739a841039754094f68a026ad7d https://www.encodeproject.org/files/ENCFF991KHM/@@download/ENCFF991KHM.bigBed hg19 released ENCFF833GDZ bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF146NJI 6683708 ENCODE Processing Pipeline 40ef3cb0eefd27c5918a40c7d0d9a3fd https://www.encodeproject.org/files/ENCFF833GDZ/@@download/ENCFF833GDZ.bed.gz hg19 released ENCFF817RST bed narrowPeak optimal idr thresholded peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF081YIR, ENCFF833GDZ, ENCFF921PXY 427284 ENCODE Processing Pipeline 50257909e3bcb342ebf3476e6849537a https://www.encodeproject.org/files/ENCFF817RST/@@download/ENCFF817RST.bed.gz hg19 released ENCFF486WQE bigWig signal p-value ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF146NJI 996448958 ENCODE Processing Pipeline 5013a61cdb7536e3d0f3f8ef23e9b2a1 https://www.encodeproject.org/files/ENCFF486WQE/@@download/ENCFF486WQE.bigWig hg19 released ENCFF921PXY bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF146NJI, ENCFF583FAG, ENCFF952LEG 7169742 ENCODE Processing Pipeline 79fe75aa55487d0326395b79049ebeb7 https://www.encodeproject.org/files/ENCFF921PXY/@@download/ENCFF921PXY.bed.gz hg19 released ENCFF689WAA fastq reads ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1468649886 Richard Myers, HAIB 62b0ef4b2b344635f3136ff1ca554304 SRA:SRR5331412 https://www.encodeproject.org/files/ENCFF689WAA/@@download/ENCFF689WAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF972ZUD fastq reads ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1632201261 Richard Myers, HAIB df9d8ba1f15a5ddf1e4f7a88cbb7a0dd SRA:SRR5331411 https://www.encodeproject.org/files/ENCFF972ZUD/@@download/ENCFF972ZUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF231XVC bigWig signal p-value ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF348RHT, ENCFF654EHF, ENCFF991UTU 969318594 ENCODE Processing Pipeline f9304c8165279a28f0e8a0712d40f21b https://www.encodeproject.org/files/ENCFF231XVC/@@download/ENCFF231XVC.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF512ZHO bigWig fold change over control ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF348RHT, ENCFF654EHF, ENCFF991UTU 976551385 ENCODE Processing Pipeline 88f4b4b676dfa9ab7e9d185e2912d3e5 https://www.encodeproject.org/files/ENCFF512ZHO/@@download/ENCFF512ZHO.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF077SLL bam unfiltered alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF689WAA 1653166591 ENCODE Processing Pipeline 9841733b8e6536b8c193e672bfd709bb https://www.encodeproject.org/files/ENCFF077SLL/@@download/ENCFF077SLL.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF032LDQ bam unfiltered alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF972ZUD 1812441018 ENCODE Processing Pipeline c3651a63d4a01cae1242c6fb35d8ed17 https://www.encodeproject.org/files/ENCFF032LDQ/@@download/ENCFF032LDQ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF459VZA bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF689WAA 1242049797 ENCODE Processing Pipeline eb1b076968d84e1b8aa8fb30479624a4 https://www.encodeproject.org/files/ENCFF459VZA/@@download/ENCFF459VZA.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF896BMA bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF972ZUD 1350650959 ENCODE Processing Pipeline cc86e2283e0fd4914c9c42a236079383 https://www.encodeproject.org/files/ENCFF896BMA/@@download/ENCFF896BMA.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF581XVI bigWig fold change over control ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF459VZA, ENCFF995OIG 965282060 ENCODE Processing Pipeline 2ac140d8309e71565f0d748962dcd20e https://www.encodeproject.org/files/ENCFF581XVI/@@download/ENCFF581XVI.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF572SMO bigWig signal p-value ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF896BMA, ENCFF995OIG 1018537190 ENCODE Processing Pipeline e6856d4d16bea3a156c14101f7add341 https://www.encodeproject.org/files/ENCFF572SMO/@@download/ENCFF572SMO.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF705BOD bigWig signal p-value ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF459VZA, ENCFF995OIG 1024615750 ENCODE Processing Pipeline c986323d1dc2b6d924021183de84e924 https://www.encodeproject.org/files/ENCFF705BOD/@@download/ENCFF705BOD.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF014IVZ bigWig signal p-value ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF459VZA, ENCFF896BMA, ENCFF995OIG 1211731646 ENCODE Processing Pipeline 8402c1d74068a32d81f60d9bda00ee87 https://www.encodeproject.org/files/ENCFF014IVZ/@@download/ENCFF014IVZ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF289VWJ bigWig fold change over control ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF896BMA, ENCFF995OIG 994950466 ENCODE Processing Pipeline 067d5817fddb1c39658689e0f96ccf88 https://www.encodeproject.org/files/ENCFF289VWJ/@@download/ENCFF289VWJ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF287ZYU bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF459VZA, ENCFF995OIG 6372060 ENCODE Processing Pipeline cae1e5840857c3261e63df1d1c60383b https://www.encodeproject.org/files/ENCFF287ZYU/@@download/ENCFF287ZYU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF711DHZ bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF896BMA, ENCFF995OIG 6505930 ENCODE Processing Pipeline becbf4917110dfcb53e17a746deb8ab5 https://www.encodeproject.org/files/ENCFF711DHZ/@@download/ENCFF711DHZ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF528FTD bigWig fold change over control ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF459VZA, ENCFF896BMA, ENCFF995OIG 1437403571 ENCODE Processing Pipeline ecc6ccd3b704ab00c9cee2716ffd2408 https://www.encodeproject.org/files/ENCFF528FTD/@@download/ENCFF528FTD.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF199CZR bigBed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF711DHZ 13434923 ENCODE Processing Pipeline aac64b78fbf5fc6f65c8f3699a0f5aeb https://www.encodeproject.org/files/ENCFF199CZR/@@download/ENCFF199CZR.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF851EKF bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF459VZA, ENCFF896BMA, ENCFF995OIG 6937787 ENCODE Processing Pipeline 97da319bce4bc1183675320de6ee33a3 https://www.encodeproject.org/files/ENCFF851EKF/@@download/ENCFF851EKF.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF595XKR bigBed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF851EKF 13406496 ENCODE Processing Pipeline d47f7f38566b79b010481189b52ceec2 https://www.encodeproject.org/files/ENCFF595XKR/@@download/ENCFF595XKR.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF711ERI bigBed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF287ZYU 13600666 ENCODE Processing Pipeline 6cfbbaae75a0d54cfe8300b1975e757f https://www.encodeproject.org/files/ENCFF711ERI/@@download/ENCFF711ERI.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF032ACV bed narrowPeak conservative idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF287ZYU, ENCFF419RSJ, ENCFF711DHZ, ENCFF851EKF 290972 ENCODE Processing Pipeline b8f77abc460e5837d39a790d0cdd7e11 https://www.encodeproject.org/files/ENCFF032ACV/@@download/ENCFF032ACV.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF420PED bed narrowPeak optimal idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF287ZYU, ENCFF419RSJ, ENCFF711DHZ, ENCFF851EKF 395502 ENCODE Processing Pipeline 3d5dd20165daa0d5bed3ae84f9143202 https://www.encodeproject.org/files/ENCFF420PED/@@download/ENCFF420PED.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF414YYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF032ACV 648723 ENCODE Processing Pipeline e008ab2b270375f7ad0e734cd3e70c0f https://www.encodeproject.org/files/ENCFF414YYJ/@@download/ENCFF414YYJ.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF074YEK bigBed narrowPeak optimal idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF420PED 817651 ENCODE Processing Pipeline 7468186b9926d75dce7599c6bb9b4216 https://www.encodeproject.org/files/ENCFF074YEK/@@download/ENCFF074YEK.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF016FVB bam unfiltered alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF972ZUD 1803103653 ENCODE Processing Pipeline 08e96c32ede12fb9fc8c48a1f719dc41 https://www.encodeproject.org/files/ENCFF016FVB/@@download/ENCFF016FVB.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF763BJA bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF689WAA, ENCFF807MUK 1241881369 ENCODE Processing Pipeline c3b09e37d7c7595b888d84c1647962e0 https://www.encodeproject.org/files/ENCFF763BJA/@@download/ENCFF763BJA.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF348RHT bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF972ZUD 1350610150 ENCODE Processing Pipeline 2ca8451e5a57728ddc6225a97e085b91 https://www.encodeproject.org/files/ENCFF348RHT/@@download/ENCFF348RHT.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF199WXN bam unfiltered alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF689WAA, ENCFF807MUK 1644472539 ENCODE Processing Pipeline 990d05493597c0607afb3e0ee9282cba https://www.encodeproject.org/files/ENCFF199WXN/@@download/ENCFF199WXN.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF761SWJ bigWig signal p-value ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 1085928959 ENCODE Processing Pipeline 46c484e92872ab201df3fec470456e46 https://www.encodeproject.org/files/ENCFF761SWJ/@@download/ENCFF761SWJ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF345DXT bigWig signal p-value ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF348RHT, ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 1223076573 ENCODE Processing Pipeline 1d9998b8ae96466f999aca0121021185 https://www.encodeproject.org/files/ENCFF345DXT/@@download/ENCFF345DXT.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF349LVY bigWig fold change over control ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 979801664 ENCODE Processing Pipeline 539ae6c7fb907eb54812ad0b57a36945 https://www.encodeproject.org/files/ENCFF349LVY/@@download/ENCFF349LVY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF117TPN bigBed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF755MSZ 13418175 ENCODE Processing Pipeline c26b625effc9df1ffac98224e808957a https://www.encodeproject.org/files/ENCFF117TPN/@@download/ENCFF117TPN.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF094XYL bigWig fold change over control ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF348RHT, ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 1465280645 ENCODE Processing Pipeline dea36ce7240fa3db7c2c27a67738f510 https://www.encodeproject.org/files/ENCFF094XYL/@@download/ENCFF094XYL.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF755MSZ bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF348RHT, ENCFF654EHF, ENCFF991UTU 6527404 ENCODE Processing Pipeline e09b319f1570533cfd2fd14888b6b00a https://www.encodeproject.org/files/ENCFF755MSZ/@@download/ENCFF755MSZ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF148VNY bigBed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF063GQS 13540772 ENCODE Processing Pipeline 55f69fd3c2dc79a128b7a29c2e113839 https://www.encodeproject.org/files/ENCFF148VNY/@@download/ENCFF148VNY.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF063GQS bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 6364179 ENCODE Processing Pipeline 73c9e6ffd398f7b1525634dbeab99bbf https://www.encodeproject.org/files/ENCFF063GQS/@@download/ENCFF063GQS.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF235XPK bed narrowPeak conservative idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF063GQS, ENCFF567PTY, ENCFF755MSZ 292577 ENCODE Processing Pipeline e32374a877a24e550001db0ad7a791de https://www.encodeproject.org/files/ENCFF235XPK/@@download/ENCFF235XPK.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF441ULY bigBed narrowPeak optimal idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF693FRV 814634 ENCODE Processing Pipeline 4e990e44939d05a13895380a9197a169 https://www.encodeproject.org/files/ENCFF441ULY/@@download/ENCFF441ULY.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF567PTY bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF348RHT, ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 6957449 ENCODE Processing Pipeline 0e16fc8da16c1df5c28d844be9e31860 https://www.encodeproject.org/files/ENCFF567PTY/@@download/ENCFF567PTY.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF411APS bigBed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF567PTY 13398941 ENCODE Processing Pipeline 523351bc6e080830e2e5195388a614d6 https://www.encodeproject.org/files/ENCFF411APS/@@download/ENCFF411APS.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF014COI bigBed narrowPeak conservative idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235XPK 649791 ENCODE Processing Pipeline 8c281890f13cb49b2a39e94741c249f5 https://www.encodeproject.org/files/ENCFF014COI/@@download/ENCFF014COI.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF693FRV bed narrowPeak optimal idr thresholded peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF063GQS, ENCFF567PTY, ENCFF755MSZ 394305 ENCODE Processing Pipeline 433d0c39ff3942ba18f059f8a4b159d1 https://www.encodeproject.org/files/ENCFF693FRV/@@download/ENCFF693FRV.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF336OYQ bam unfiltered alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 100 ENCFF292TZE, ENCFF710ZBC, ENCFF807MUK 6182100726 ENCODE Processing Pipeline f2516641db7f8d63a71b1e2e8f3ed304 https://www.encodeproject.org/files/ENCFF336OYQ/@@download/ENCFF336OYQ.bam hg19 released antibody characterized with exemption ENCFF870QAR bam unfiltered alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 100 ENCFF241YMF, ENCFF807MUK, ENCFF941CCE 6250949955 ENCODE Processing Pipeline 57fa5046da1a4856e2aa07f808cf6067 https://www.encodeproject.org/files/ENCFF870QAR/@@download/ENCFF870QAR.bam hg19 released antibody characterized with exemption ENCFF292TZE fastq reads ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF710ZBC 2851410445 Michael Snyder, Stanford 726f8629e48ad4121b9c26c2216bea15 SRA:SRR6213715 https://www.encodeproject.org/files/ENCFF292TZE/@@download/ENCFF292TZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption ENCFF941CCE fastq reads ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF241YMF 2967457883 Michael Snyder, Stanford e7abfc9782058ef076a9621c0b4b36a2 SRA:SRR6213714 https://www.encodeproject.org/files/ENCFF941CCE/@@download/ENCFF941CCE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption ENCFF710ZBC fastq reads ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF292TZE 2946203117 Michael Snyder, Stanford 428a513cc1755d6f804bc2560a1a3163 SRA:SRR6213715 https://www.encodeproject.org/files/ENCFF710ZBC/@@download/ENCFF710ZBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption ENCFF241YMF fastq reads ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF941CCE 2879763975 Michael Snyder, Stanford 215f108525f0916531bdc40ed5a598c3 SRA:SRR6213714 https://www.encodeproject.org/files/ENCFF241YMF/@@download/ENCFF241YMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption ENCFF057NCM bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 100 ENCFF241YMF, ENCFF807MUK, ENCFF941CCE 5191782993 ENCODE Processing Pipeline d01b9db2f5c7f3ac88bfb1bb963a25e4 https://www.encodeproject.org/files/ENCFF057NCM/@@download/ENCFF057NCM.bam hg19 released antibody characterized with exemption ENCFF891JGT bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 100 ENCFF292TZE, ENCFF710ZBC, ENCFF807MUK 5227199260 ENCODE Processing Pipeline ae03cecee914c38b6f30ac5d62c65d72 https://www.encodeproject.org/files/ENCFF891JGT/@@download/ENCFF891JGT.bam hg19 released antibody characterized with exemption ENCFF967SMZ bigWig signal p-value ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF057NCM, ENCFF581ZJL 1394459341 ENCODE Processing Pipeline ac45e4217d766828cf8e898acce4daec https://www.encodeproject.org/files/ENCFF967SMZ/@@download/ENCFF967SMZ.bigWig hg19 released antibody characterized with exemption ENCFF685CLD bigWig signal p-value ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF891JGT 1157000515 ENCODE Processing Pipeline a56301c4e910281d02daeea1f028d2ec https://www.encodeproject.org/files/ENCFF685CLD/@@download/ENCFF685CLD.bigWig hg19 released antibody characterized with exemption ENCFF240ITM bigWig signal p-value ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF057NCM, ENCFF581ZJL, ENCFF891JGT 2094931298 ENCODE Processing Pipeline 08d64b0a81dd698894aa1de966bbd71c https://www.encodeproject.org/files/ENCFF240ITM/@@download/ENCFF240ITM.bigWig hg19 released antibody characterized with exemption ENCFF106HCG bigWig fold change over control ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF057NCM, ENCFF581ZJL 1338024986 ENCODE Processing Pipeline c7f9e1b2aababd3af52809f1550d8ad8 https://www.encodeproject.org/files/ENCFF106HCG/@@download/ENCFF106HCG.bigWig hg19 released antibody characterized with exemption ENCFF311IFA bigWig fold change over control ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF891JGT 1285172257 ENCODE Processing Pipeline 86b1d500c555b904c4485f8bb3cd335f https://www.encodeproject.org/files/ENCFF311IFA/@@download/ENCFF311IFA.bigWig hg19 released antibody characterized with exemption ENCFF595RNS bigWig fold change over control ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF057NCM, ENCFF581ZJL, ENCFF891JGT 2313270123 ENCODE Processing Pipeline a6afe5bb414d1e6daa8d80cd0a5a73f4 https://www.encodeproject.org/files/ENCFF595RNS/@@download/ENCFF595RNS.bigWig hg19 released antibody characterized with exemption ENCFF953ORJ bam unfiltered alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 100 ENCFF241YMF, ENCFF643CGH, ENCFF941CCE 6258223667 ENCODE Processing Pipeline 2ddfce3a9c393be44e3ac763d4c4a053 https://www.encodeproject.org/files/ENCFF953ORJ/@@download/ENCFF953ORJ.bam GRCh38 released antibody characterized with exemption ENCFF998BKX bam unfiltered alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 100 ENCFF292TZE, ENCFF643CGH, ENCFF710ZBC 6187852956 ENCODE Processing Pipeline 68aabf807e5c9e1e0ddcd78e9515c4d6 https://www.encodeproject.org/files/ENCFF998BKX/@@download/ENCFF998BKX.bam GRCh38 released antibody characterized with exemption ENCFF657TZQ bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 100 ENCFF241YMF, ENCFF643CGH, ENCFF941CCE 5193671450 ENCODE Processing Pipeline 6dd331011c677fe339958c39192cafbd https://www.encodeproject.org/files/ENCFF657TZQ/@@download/ENCFF657TZQ.bam GRCh38 released antibody characterized with exemption ENCFF738AVH bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 100 ENCFF292TZE, ENCFF643CGH, ENCFF710ZBC 5228373859 ENCODE Processing Pipeline c1b8bc6a8900399656dc422f69f46fa7 https://www.encodeproject.org/files/ENCFF738AVH/@@download/ENCFF738AVH.bam GRCh38 released antibody characterized with exemption ENCFF357BAQ bigWig signal p-value ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF657TZQ, ENCFF910IKB 1094999938 ENCODE Processing Pipeline 8b5489078556be21471e043fcf1a5d7e https://www.encodeproject.org/files/ENCFF357BAQ/@@download/ENCFF357BAQ.bigWig GRCh38 released antibody characterized with exemption ENCFF344OSQ bigWig signal p-value ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF738AVH 1102477987 ENCODE Processing Pipeline b9a032ae37a97ac5b3eda64ef3327774 https://www.encodeproject.org/files/ENCFF344OSQ/@@download/ENCFF344OSQ.bigWig GRCh38 released antibody characterized with exemption ENCFF205MGT bigWig signal p-value ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF227IZS, ENCFF657TZQ, ENCFF738AVH, ENCFF910IKB 1807845882 ENCODE Processing Pipeline 9cbdb034f531cc8c7543cdf613dd22d7 https://www.encodeproject.org/files/ENCFF205MGT/@@download/ENCFF205MGT.bigWig GRCh38 released antibody characterized with exemption ENCFF356IMJ bigWig fold change over control ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF657TZQ, ENCFF910IKB 1352405371 ENCODE Processing Pipeline dfc3d41d30d184ea3ee60521bf7707a2 https://www.encodeproject.org/files/ENCFF356IMJ/@@download/ENCFF356IMJ.bigWig GRCh38 released antibody characterized with exemption ENCFF619PKO bigWig fold change over control ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF738AVH 1286110272 ENCODE Processing Pipeline 4cecd2ea20d1115cf1bbee50ea60fb17 https://www.encodeproject.org/files/ENCFF619PKO/@@download/ENCFF619PKO.bigWig GRCh38 released antibody characterized with exemption ENCFF026MQA bigWig fold change over control ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF227IZS, ENCFF657TZQ, ENCFF738AVH, ENCFF910IKB 2315814803 ENCODE Processing Pipeline 4397fc36a54c366cbac286e90acb2636 https://www.encodeproject.org/files/ENCFF026MQA/@@download/ENCFF026MQA.bigWig GRCh38 released antibody characterized with exemption ENCFF615KWQ bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF657TZQ, ENCFF910IKB 7092343 ENCODE Processing Pipeline 165ccb4d4554a0ef081544a8b208531d https://www.encodeproject.org/files/ENCFF615KWQ/@@download/ENCFF615KWQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF567GWM bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF738AVH 7173717 ENCODE Processing Pipeline 4e4e39d3eb0eeab7e7cdca7904d8be90 https://www.encodeproject.org/files/ENCFF567GWM/@@download/ENCFF567GWM.bed.gz GRCh38 released antibody characterized with exemption ENCFF532BAK bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF227IZS, ENCFF657TZQ, ENCFF738AVH, ENCFF910IKB 7279285 ENCODE Processing Pipeline 76b74493e2ff9ccc4724263d0fff29de https://www.encodeproject.org/files/ENCFF532BAK/@@download/ENCFF532BAK.bed.gz GRCh38 released antibody characterized with exemption ENCFF036PVX bigBed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF615KWQ 13193442 ENCODE Processing Pipeline 8b1704756d88c5a97b7c9cfd41b0e15c https://www.encodeproject.org/files/ENCFF036PVX/@@download/ENCFF036PVX.bigBed GRCh38 released antibody characterized with exemption ENCFF505OTR bigBed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF567GWM 12941971 ENCODE Processing Pipeline 53b54c7e9d9aca62f519f16604b0865e https://www.encodeproject.org/files/ENCFF505OTR/@@download/ENCFF505OTR.bigBed GRCh38 released antibody characterized with exemption ENCFF546XMC bigBed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF532BAK 12991105 ENCODE Processing Pipeline b470441470e4b405ef77afef6aae7305 https://www.encodeproject.org/files/ENCFF546XMC/@@download/ENCFF546XMC.bigBed GRCh38 released antibody characterized with exemption ENCFF535ZFM bed narrowPeak conservative idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF532BAK, ENCFF567GWM, ENCFF615KWQ 416129 ENCODE Processing Pipeline 7793c91cafb20c8e4171d421c299d5b2 https://www.encodeproject.org/files/ENCFF535ZFM/@@download/ENCFF535ZFM.bed.gz GRCh38 released antibody characterized with exemption ENCFF044QPT bigBed narrowPeak conservative idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF535ZFM 862644 ENCODE Processing Pipeline cf0bce3b4ea6017f3e44094960ffbf60 https://www.encodeproject.org/files/ENCFF044QPT/@@download/ENCFF044QPT.bigBed GRCh38 released antibody characterized with exemption ENCFF260CBQ bed narrowPeak optimal idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF532BAK, ENCFF567GWM, ENCFF615KWQ 520138 ENCODE Processing Pipeline 5a37d6db72e31e29e52b6c2b83618f68 https://www.encodeproject.org/files/ENCFF260CBQ/@@download/ENCFF260CBQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF431HSM bigBed narrowPeak optimal idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF260CBQ 1020560 ENCODE Processing Pipeline 21169f43dec315137d3ea8224bbcf5d1 https://www.encodeproject.org/files/ENCFF431HSM/@@download/ENCFF431HSM.bigBed GRCh38 released antibody characterized with exemption ENCFF560GUE bigBed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF309SZA 12925835 ENCODE Processing Pipeline 8eb26b8c7126b3ca88788508fe3350d3 https://www.encodeproject.org/files/ENCFF560GUE/@@download/ENCFF560GUE.bigBed hg19 released antibody characterized with exemption ENCFF309SZA bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF891JGT 7176855 ENCODE Processing Pipeline 49d352536c4577a2bfc11622141afab3 https://www.encodeproject.org/files/ENCFF309SZA/@@download/ENCFF309SZA.bed.gz hg19 released antibody characterized with exemption ENCFF956UQS bigBed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF924XOY 13005926 ENCODE Processing Pipeline e532ceb7efcae02dfc5fa05869a8f825 https://www.encodeproject.org/files/ENCFF956UQS/@@download/ENCFF956UQS.bigBed hg19 released antibody characterized with exemption ENCFF576GFA bigBed narrowPeak optimal idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF340PPI 1031175 ENCODE Processing Pipeline 355a21ad1e44f4bca74ee1597d38044c https://www.encodeproject.org/files/ENCFF576GFA/@@download/ENCFF576GFA.bigBed hg19 released antibody characterized with exemption ENCFF720BVJ bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF057NCM, ENCFF581ZJL 7096882 ENCODE Processing Pipeline 5642da1c0113cedbfd494e26d8fe70cc https://www.encodeproject.org/files/ENCFF720BVJ/@@download/ENCFF720BVJ.bed.gz hg19 released antibody characterized with exemption ENCFF924XOY bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF057NCM, ENCFF581ZJL, ENCFF891JGT 7301964 ENCODE Processing Pipeline 58942973d3f4e298ec657e05dafe9706 https://www.encodeproject.org/files/ENCFF924XOY/@@download/ENCFF924XOY.bed.gz hg19 released antibody characterized with exemption ENCFF214JKY bigBed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF720BVJ 13188359 ENCODE Processing Pipeline 40e08b08849b6c8473361148974a4256 https://www.encodeproject.org/files/ENCFF214JKY/@@download/ENCFF214JKY.bigBed hg19 released antibody characterized with exemption ENCFF687PGE bigBed narrowPeak conservative idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF016XTQ 871501 ENCODE Processing Pipeline ecd5f214aee13a4f51a0d02a76cad1a0 https://www.encodeproject.org/files/ENCFF687PGE/@@download/ENCFF687PGE.bigBed hg19 released antibody characterized with exemption ENCFF016XTQ bed narrowPeak conservative idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF309SZA, ENCFF720BVJ, ENCFF924XOY 424887 ENCODE Processing Pipeline b0a55b9cab5d1aecab294b47f21dbf87 https://www.encodeproject.org/files/ENCFF016XTQ/@@download/ENCFF016XTQ.bed.gz hg19 released antibody characterized with exemption ENCFF340PPI bed narrowPeak optimal idr thresholded peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF309SZA, ENCFF720BVJ, ENCFF924XOY 530134 ENCODE Processing Pipeline 9a398398d2c9211d4896d977bf907b72 https://www.encodeproject.org/files/ENCFF340PPI/@@download/ENCFF340PPI.bed.gz hg19 released antibody characterized with exemption ENCFF661CQW bam unfiltered alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF184ZLD, ENCFF560POR, ENCFF807MUK 1634181307 ENCODE Processing Pipeline a08758ee1588e0d04782980e0e0d6e07 https://www.encodeproject.org/files/ENCFF661CQW/@@download/ENCFF661CQW.bam hg19 released control low read depth, missing genetic modification characterization ENCFF512JDZ bam unfiltered alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF203HJN, ENCFF804ROV, ENCFF807MUK 1798295168 ENCODE Processing Pipeline c1bee7e28b26cf550c193b343aa81f7c https://www.encodeproject.org/files/ENCFF512JDZ/@@download/ENCFF512JDZ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF804ROV fastq reads ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 747936726 Kevin White, UChicago 42d739c4bd6154f54527fa05a91ececa SRA:SRR6212620 https://www.encodeproject.org/files/ENCFF804ROV/@@download/ENCFF804ROV.fastq.gz Illumina HiSeq 2500 /files/ENCFF787HQI/ released control low read depth, missing genetic modification characterization ENCFF184ZLD fastq reads ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 548201430 Kevin White, UChicago 1a8fd8fd8a11237d8a89df46b293bae6 SRA:SRR6212622 https://www.encodeproject.org/files/ENCFF184ZLD/@@download/ENCFF184ZLD.fastq.gz Illumina HiSeq 2500 /files/ENCFF787HQI/ released control low read depth, missing genetic modification characterization ENCFF560POR fastq reads ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 946026655 Kevin White, UChicago 03ff17ad13f760815d7bd1192bf32093 SRA:SRR6212623 https://www.encodeproject.org/files/ENCFF560POR/@@download/ENCFF560POR.fastq.gz Illumina HiSeq 2500 /files/ENCFF787HQI/ released control low read depth, missing genetic modification characterization ENCFF203HJN fastq reads ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 907462454 Kevin White, UChicago 0fde580d27ba88ad3eb6e50451b84013 SRA:SRR6212621 https://www.encodeproject.org/files/ENCFF203HJN/@@download/ENCFF203HJN.fastq.gz Illumina HiSeq 2500 /files/ENCFF787HQI/ released control low read depth, missing genetic modification characterization ENCFF877WMR bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF184ZLD, ENCFF560POR, ENCFF807MUK 1268559997 ENCODE Processing Pipeline c77d138f16437d1eeeaf76b40c65b288 https://www.encodeproject.org/files/ENCFF877WMR/@@download/ENCFF877WMR.bam hg19 released control low read depth, missing genetic modification characterization ENCFF471EXM bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF203HJN, ENCFF804ROV, ENCFF807MUK 1386729352 ENCODE Processing Pipeline 6751ae57266729afcf328a64ed71f5d9 https://www.encodeproject.org/files/ENCFF471EXM/@@download/ENCFF471EXM.bam hg19 released control low read depth, missing genetic modification characterization ENCFF305DAM bigWig signal p-value ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF450MML, ENCFF471EXM 442438411 ENCODE Processing Pipeline f94ab8c1484620ad48a41478f564b21a https://www.encodeproject.org/files/ENCFF305DAM/@@download/ENCFF305DAM.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF754BAY bigWig fold change over control ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF450MML, ENCFF471EXM 579143873 ENCODE Processing Pipeline 9d0f4c255011cddf9ab1beba4bc1d0ec https://www.encodeproject.org/files/ENCFF754BAY/@@download/ENCFF754BAY.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF015EYV bigWig signal p-value ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF450MML, ENCFF877WMR 442583581 ENCODE Processing Pipeline 01fa8e6ccd0bed17722b7a6ee50d9d24 https://www.encodeproject.org/files/ENCFF015EYV/@@download/ENCFF015EYV.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF343VYQ bigWig fold change over control ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF450MML, ENCFF877WMR 521989765 ENCODE Processing Pipeline bc5dc146dabe972e9a43aa2329f1e73d https://www.encodeproject.org/files/ENCFF343VYQ/@@download/ENCFF343VYQ.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF258YNB bigWig signal p-value ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF450MML, ENCFF471EXM, ENCFF877WMR 435230803 ENCODE Processing Pipeline 218be82bc475e35233147f52f2a261c4 https://www.encodeproject.org/files/ENCFF258YNB/@@download/ENCFF258YNB.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF480XIJ bigWig fold change over control ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF450MML, ENCFF471EXM, ENCFF877WMR 892054292 ENCODE Processing Pipeline a1b09df2a1d26d5e2f1216bb7dac89a2 https://www.encodeproject.org/files/ENCFF480XIJ/@@download/ENCFF480XIJ.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF139LBR bigBed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF482DDO 13161187 ENCODE Processing Pipeline f3eeb7d8f89be59d363d574c1542885b https://www.encodeproject.org/files/ENCFF139LBR/@@download/ENCFF139LBR.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF223YLF bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF450MML, ENCFF877WMR 5991733 ENCODE Processing Pipeline 77fdd9901e99405f2b0f8361c89f4160 https://www.encodeproject.org/files/ENCFF223YLF/@@download/ENCFF223YLF.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF179RVQ bigBed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF381BVK 13344408 ENCODE Processing Pipeline 95d7aaceb12eddde441b2fd2d5e11e35 https://www.encodeproject.org/files/ENCFF179RVQ/@@download/ENCFF179RVQ.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF381BVK bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF450MML, ENCFF471EXM 6000427 ENCODE Processing Pipeline 3056b1a034fc75f667da081b1b1b2d45 https://www.encodeproject.org/files/ENCFF381BVK/@@download/ENCFF381BVK.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF825KKD bigBed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF223YLF 13362301 ENCODE Processing Pipeline edfdd2466ec3155f6793bdadce660f91 https://www.encodeproject.org/files/ENCFF825KKD/@@download/ENCFF825KKD.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF482DDO bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF450MML, ENCFF471EXM, ENCFF877WMR 6695340 ENCODE Processing Pipeline e1b9e2f2d5882df5d98e554ee8c559f8 https://www.encodeproject.org/files/ENCFF482DDO/@@download/ENCFF482DDO.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF020HNC bam unfiltered alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF184ZLD, ENCFF560POR, ENCFF643CGH 1641490262 ENCODE Processing Pipeline de90220dc53e380d2a85adef64fa174b https://www.encodeproject.org/files/ENCFF020HNC/@@download/ENCFF020HNC.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF629YDV bam unfiltered alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF203HJN, ENCFF643CGH, ENCFF804ROV 1806642935 ENCODE Processing Pipeline 5ce8c2bca37b2609a34185ed487231d5 https://www.encodeproject.org/files/ENCFF629YDV/@@download/ENCFF629YDV.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF449ZQR bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF184ZLD, ENCFF560POR, ENCFF643CGH 1268211309 ENCODE Processing Pipeline d377537bdb65574389b333c5208fe346 https://www.encodeproject.org/files/ENCFF449ZQR/@@download/ENCFF449ZQR.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF651NEA bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF203HJN, ENCFF643CGH, ENCFF804ROV 1386357580 ENCODE Processing Pipeline da6e91a3a5a5496db27e980a851821c6 https://www.encodeproject.org/files/ENCFF651NEA/@@download/ENCFF651NEA.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF634EAA bigWig signal p-value ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQR, ENCFF640BTE 446946142 ENCODE Processing Pipeline 6e7cc0481f1309fd50b7fab02f4a5715 https://www.encodeproject.org/files/ENCFF634EAA/@@download/ENCFF634EAA.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF240QEE bigWig signal p-value ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF449ZQR, ENCFF640BTE, ENCFF651NEA 427390316 ENCODE Processing Pipeline 84c98635cc02dd03fb820a3f3cd71571 https://www.encodeproject.org/files/ENCFF240QEE/@@download/ENCFF240QEE.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF331KRP bigWig signal p-value ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF640BTE, ENCFF651NEA 439588560 ENCODE Processing Pipeline 881ea4bcb2a8c1373067a3de2168a2e8 https://www.encodeproject.org/files/ENCFF331KRP/@@download/ENCFF331KRP.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF281HNR bigWig fold change over control ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQR, ENCFF640BTE 529351457 ENCODE Processing Pipeline dfeefc34f59208fa8659014a243e502e https://www.encodeproject.org/files/ENCFF281HNR/@@download/ENCFF281HNR.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF776TQY bigWig fold change over control ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF449ZQR, ENCFF640BTE, ENCFF651NEA 881318238 ENCODE Processing Pipeline 58bcfc3319e7204102305f4a96d25e73 https://www.encodeproject.org/files/ENCFF776TQY/@@download/ENCFF776TQY.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF391TZY bigBed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF838LYZ 13174468 ENCODE Processing Pipeline 2735656251c061d559028aad0a180951 https://www.encodeproject.org/files/ENCFF391TZY/@@download/ENCFF391TZY.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF866SKT bigWig fold change over control ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF640BTE, ENCFF651NEA 573713861 ENCODE Processing Pipeline e2275defa7b75ce3ec4a96c059e5582e https://www.encodeproject.org/files/ENCFF866SKT/@@download/ENCFF866SKT.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF370PLR bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF640BTE, ENCFF651NEA 5688026 ENCODE Processing Pipeline c9210682d1d06da276a30d2b7d606cd8 https://www.encodeproject.org/files/ENCFF370PLR/@@download/ENCFF370PLR.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF150ZOG bigBed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF370PLR 13333278 ENCODE Processing Pipeline f5e42dd7051e10a132208de903372103 https://www.encodeproject.org/files/ENCFF150ZOG/@@download/ENCFF150ZOG.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF838LYZ bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF449ZQR, ENCFF640BTE, ENCFF651NEA 6492404 ENCODE Processing Pipeline 81bccffa4626cc849eec481ad0bf7c60 https://www.encodeproject.org/files/ENCFF838LYZ/@@download/ENCFF838LYZ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF036SSI bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQR, ENCFF640BTE 5618226 ENCODE Processing Pipeline bf72234c9a85c0471f0803299fe49204 https://www.encodeproject.org/files/ENCFF036SSI/@@download/ENCFF036SSI.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF318RGX bigBed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF036SSI 13340488 ENCODE Processing Pipeline fbb4aae7d0871bb31a667578064bc79c https://www.encodeproject.org/files/ENCFF318RGX/@@download/ENCFF318RGX.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF930PBH bed narrowPeak optimal idr thresholded peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF036SSI, ENCFF370PLR, ENCFF419RSJ, ENCFF838LYZ 281720 ENCODE Processing Pipeline baf430dbec4b5b4d10651d4ba340203f https://www.encodeproject.org/files/ENCFF930PBH/@@download/ENCFF930PBH.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF478GPD bigBed narrowPeak optimal idr thresholded peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF930PBH 508953 ENCODE Processing Pipeline 06984b33f43d4b88bf9ebdf87b52295f https://www.encodeproject.org/files/ENCFF478GPD/@@download/ENCFF478GPD.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF433SID bed narrowPeak conservative idr thresholded peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF223YLF, ENCFF381BVK, ENCFF482DDO 227109 ENCODE Processing Pipeline 4807d78d228e0aa7d4c217bd64003e15 https://www.encodeproject.org/files/ENCFF433SID/@@download/ENCFF433SID.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF961AJY bigBed narrowPeak conservative idr thresholded peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF433SID 427233 ENCODE Processing Pipeline 450874d3eac97ff570f82a13d2a59cc1 https://www.encodeproject.org/files/ENCFF961AJY/@@download/ENCFF961AJY.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF795RZA bigBed narrowPeak optimal idr thresholded peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF884GAH 437400 ENCODE Processing Pipeline 6543aefac271d1bb584b1fb06222bb5d https://www.encodeproject.org/files/ENCFF795RZA/@@download/ENCFF795RZA.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF884GAH bed narrowPeak optimal idr thresholded peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF223YLF, ENCFF381BVK, ENCFF482DDO 234617 ENCODE Processing Pipeline 16716888547d8fbfce198b63ad9fb09b https://www.encodeproject.org/files/ENCFF884GAH/@@download/ENCFF884GAH.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF627HTL bam unfiltered alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPJ, ENCFF002EGF, ENCFF807MUK 8579927803 ENCODE Processing Pipeline f0601bf1b103b6e7251fd0cfe348cfcb https://www.encodeproject.org/files/ENCFF627HTL/@@download/ENCFF627HTL.bam hg19 released mild to moderate bottlenecking ENCFF991ZLC bam unfiltered alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPM, ENCFF002DUA, ENCFF807MUK 7830222655 ENCODE Processing Pipeline 45f9452477c3e65d81159338b22c6e1a https://www.encodeproject.org/files/ENCFF991ZLC/@@download/ENCFF991ZLC.bam hg19 released mild to moderate bottlenecking ENCFF002DPJ fastq reads ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGF 4173078656 Michael Snyder, Stanford fbc799e4689d93e528a5a5db3fd1a99e SRA:SRR6214388 https://www.encodeproject.org/files/ENCFF002DPJ/@@download/ENCFF002DPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF002DPM fastq reads ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002DUA 3697627399 Michael Snyder, Stanford 85bce0dc93257926329d8a823d3a35e9 SRA:SRR6214389 https://www.encodeproject.org/files/ENCFF002DPM/@@download/ENCFF002DPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF002DUA fastq reads ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPM 3803308069 Michael Snyder, Stanford e07f12682a52e9a55bc4ea5e59885fed SRA:SRR6214389 https://www.encodeproject.org/files/ENCFF002DUA/@@download/ENCFF002DUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF002EGF fastq reads ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPJ 4048302634 Michael Snyder, Stanford b3689a234ab0823589ed9862f379bf23 SRA:SRR6214388 https://www.encodeproject.org/files/ENCFF002EGF/@@download/ENCFF002EGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF849SWB bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPM, ENCFF002DUA, ENCFF807MUK 6237747688 ENCODE Processing Pipeline aa372d5953b5de7a2bc84f467b0fb4d9 https://www.encodeproject.org/files/ENCFF849SWB/@@download/ENCFF849SWB.bam hg19 released mild to moderate bottlenecking ENCFF952MSU bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPJ, ENCFF002EGF, ENCFF807MUK 6820230208 ENCODE Processing Pipeline b481fd0016b01cae4a349d60b7656bc1 https://www.encodeproject.org/files/ENCFF952MSU/@@download/ENCFF952MSU.bam hg19 released mild to moderate bottlenecking ENCFF400URZ bigWig signal p-value ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF952MSU 1393662630 ENCODE Processing Pipeline 69c7c6d64bb68ffd34978663d8e6f336 https://www.encodeproject.org/files/ENCFF400URZ/@@download/ENCFF400URZ.bigWig hg19 released mild to moderate bottlenecking ENCFF549WOH bigWig fold change over control ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF952MSU 1507919681 ENCODE Processing Pipeline 7bf739cd4bbff942365d974649b13a07 https://www.encodeproject.org/files/ENCFF549WOH/@@download/ENCFF549WOH.bigWig hg19 released mild to moderate bottlenecking ENCFF244NNS bam unfiltered alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPM, ENCFF002DUA, ENCFF643CGH 7834646660 ENCODE Processing Pipeline 2d0305fd72123035b20fd26d86c55b90 https://www.encodeproject.org/files/ENCFF244NNS/@@download/ENCFF244NNS.bam GRCh38 released mild to moderate bottlenecking ENCFF158AUC bam unfiltered alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPJ, ENCFF002EGF, ENCFF643CGH 8585364284 ENCODE Processing Pipeline 1444ec02504facd3ada4471a2ff6eefb https://www.encodeproject.org/files/ENCFF158AUC/@@download/ENCFF158AUC.bam GRCh38 released mild to moderate bottlenecking ENCFF022LJH bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPM, ENCFF002DUA, ENCFF643CGH 6238605838 ENCODE Processing Pipeline 83f796f0789f223986efa3fb6b340567 https://www.encodeproject.org/files/ENCFF022LJH/@@download/ENCFF022LJH.bam GRCh38 released mild to moderate bottlenecking ENCFF508MVS bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPJ, ENCFF002EGF, ENCFF643CGH 6822072754 ENCODE Processing Pipeline 430b6b4a27b86a564413df24f76a4db2 https://www.encodeproject.org/files/ENCFF508MVS/@@download/ENCFF508MVS.bam GRCh38 released mild to moderate bottlenecking ENCFF354DLU bigWig signal p-value ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF508MVS, ENCFF910IKB 1214703027 ENCODE Processing Pipeline 44ec9dd9434156e65239880892ccf66f https://www.encodeproject.org/files/ENCFF354DLU/@@download/ENCFF354DLU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF487XCW bigWig signal p-value ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF022LJH, ENCFF227IZS 1252481064 ENCODE Processing Pipeline b05b7fcd9d12230a5828d4b78cc3f456 https://www.encodeproject.org/files/ENCFF487XCW/@@download/ENCFF487XCW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF891HZK bigWig signal p-value ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF022LJH, ENCFF227IZS, ENCFF508MVS, ENCFF910IKB 1896881299 ENCODE Processing Pipeline 2079b19f35e0a6018f1a8293fa493ca1 https://www.encodeproject.org/files/ENCFF891HZK/@@download/ENCFF891HZK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF157CSA bigWig fold change over control ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF508MVS, ENCFF910IKB 1510157786 ENCODE Processing Pipeline 8800c1794e2a8cb1fcabbacaa9876af8 https://www.encodeproject.org/files/ENCFF157CSA/@@download/ENCFF157CSA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF783QQF bigWig fold change over control ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF022LJH, ENCFF227IZS 1340297306 ENCODE Processing Pipeline 92425cb25b0e8ec0c415163e3d1cb1fc https://www.encodeproject.org/files/ENCFF783QQF/@@download/ENCFF783QQF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF049NNZ bigWig fold change over control ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF022LJH, ENCFF227IZS, ENCFF508MVS, ENCFF910IKB 2417219818 ENCODE Processing Pipeline aba8c0b737c67963867b57cdd39f54d3 https://www.encodeproject.org/files/ENCFF049NNZ/@@download/ENCFF049NNZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF895WCF bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF022LJH, ENCFF227IZS 7044455 ENCODE Processing Pipeline c0d8633482c801bc7ff4c4b88d0c77ff https://www.encodeproject.org/files/ENCFF895WCF/@@download/ENCFF895WCF.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604MQF bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF508MVS, ENCFF910IKB 6931962 ENCODE Processing Pipeline 60ac8fa3a1633e1ae9083554986d5181 https://www.encodeproject.org/files/ENCFF604MQF/@@download/ENCFF604MQF.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF477QJR bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF022LJH, ENCFF227IZS, ENCFF508MVS, ENCFF910IKB 7257974 ENCODE Processing Pipeline f8fcf9d6e1e22c3bc367c87b03c60c5c https://www.encodeproject.org/files/ENCFF477QJR/@@download/ENCFF477QJR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF339YYL bigBed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF604MQF 13309550 ENCODE Processing Pipeline 87d6fa3349871818da019218310870c3 https://www.encodeproject.org/files/ENCFF339YYL/@@download/ENCFF339YYL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF956JQI bigBed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF477QJR 13263338 ENCODE Processing Pipeline 4552becc7861f5c11125dbc71e4285ca https://www.encodeproject.org/files/ENCFF956JQI/@@download/ENCFF956JQI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF950RZR bigBed narrowPeak conservative idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF251SPU 1027047 ENCODE Processing Pipeline 4acd107c1137b90df47d38f56e6be0c6 https://www.encodeproject.org/files/ENCFF950RZR/@@download/ENCFF950RZR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF280GNH bigBed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF895WCF 13231395 ENCODE Processing Pipeline 3ae94409b0fcfa3c4239e5efc498e290 https://www.encodeproject.org/files/ENCFF280GNH/@@download/ENCFF280GNH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF251SPU bed narrowPeak conservative idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF477QJR, ENCFF604MQF, ENCFF895WCF 499744 ENCODE Processing Pipeline 93cf639e3819eb38dd6147304b6feafe https://www.encodeproject.org/files/ENCFF251SPU/@@download/ENCFF251SPU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF431STY bed narrowPeak optimal idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF477QJR, ENCFF604MQF, ENCFF895WCF 664255 ENCODE Processing Pipeline 53acd783fa28f833f0c3f047a2fd7f1f https://www.encodeproject.org/files/ENCFF431STY/@@download/ENCFF431STY.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF290IKB bigBed narrowPeak optimal idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF431STY 1276742 ENCODE Processing Pipeline 5c953d2dfceeb9ff9066611050852190 https://www.encodeproject.org/files/ENCFF290IKB/@@download/ENCFF290IKB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF459VPD bigWig signal p-value ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF849SWB 1230384053 ENCODE Processing Pipeline 252420f12221641be49c280dd78f637d https://www.encodeproject.org/files/ENCFF459VPD/@@download/ENCFF459VPD.bigWig hg19 released mild to moderate bottlenecking ENCFF275NIZ bigWig signal p-value ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF849SWB, ENCFF952MSU 2054951159 ENCODE Processing Pipeline bda5c8fc21305898894a42d01a332443 https://www.encodeproject.org/files/ENCFF275NIZ/@@download/ENCFF275NIZ.bigWig hg19 released mild to moderate bottlenecking ENCFF479LSR bigWig fold change over control ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF849SWB 1339040635 ENCODE Processing Pipeline cd6be63e1bb1129f28cdf87091a31a55 https://www.encodeproject.org/files/ENCFF479LSR/@@download/ENCFF479LSR.bigWig hg19 released mild to moderate bottlenecking ENCFF669NWG bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF849SWB, ENCFF952MSU 7252192 ENCODE Processing Pipeline 266f1bee56fdf2ea31ee6a6bf846a2fa https://www.encodeproject.org/files/ENCFF669NWG/@@download/ENCFF669NWG.bed.gz hg19 released mild to moderate bottlenecking ENCFF214NEU bigBed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF669NWG 13248776 ENCODE Processing Pipeline 4e8839c113fca60f77f5d9613115a609 https://www.encodeproject.org/files/ENCFF214NEU/@@download/ENCFF214NEU.bigBed hg19 released mild to moderate bottlenecking ENCFF757HAQ bigWig fold change over control ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF849SWB, ENCFF952MSU 2443407353 ENCODE Processing Pipeline 20110fc9441bd04b1d0fa272ff63a917 https://www.encodeproject.org/files/ENCFF757HAQ/@@download/ENCFF757HAQ.bigWig hg19 released mild to moderate bottlenecking ENCFF954EOW bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF952MSU 6924185 ENCODE Processing Pipeline d52ba4e7f65b735d615e3d4954ce9202 https://www.encodeproject.org/files/ENCFF954EOW/@@download/ENCFF954EOW.bed.gz hg19 released mild to moderate bottlenecking ENCFF900AXN bigBed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF221LMV 13130178 ENCODE Processing Pipeline 0650f2a26cef49746981e76f5cc00bd8 https://www.encodeproject.org/files/ENCFF900AXN/@@download/ENCFF900AXN.bigBed hg19 released mild to moderate bottlenecking ENCFF353GUG bed narrowPeak conservative idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF221LMV, ENCFF669NWG, ENCFF954EOW 498959 ENCODE Processing Pipeline 196208a8172a3728850a143276a9b492 https://www.encodeproject.org/files/ENCFF353GUG/@@download/ENCFF353GUG.bed.gz hg19 released mild to moderate bottlenecking ENCFF221LMV bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF849SWB 6968495 ENCODE Processing Pipeline 4f52730587772f0e911e79139e031afe https://www.encodeproject.org/files/ENCFF221LMV/@@download/ENCFF221LMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF525ZBG bigBed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF954EOW 13292494 ENCODE Processing Pipeline 67a6d020777e236614043ad287bba51a https://www.encodeproject.org/files/ENCFF525ZBG/@@download/ENCFF525ZBG.bigBed hg19 released mild to moderate bottlenecking ENCFF241TBP bed narrowPeak optimal idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF221LMV, ENCFF669NWG, ENCFF954EOW 662988 ENCODE Processing Pipeline ddfe5ef7a5a81e0d8353f3f421ca1c7b https://www.encodeproject.org/files/ENCFF241TBP/@@download/ENCFF241TBP.bed.gz hg19 released mild to moderate bottlenecking ENCFF283IFS bigBed narrowPeak optimal idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF241TBP 1274060 ENCODE Processing Pipeline b918e752e103d79aa92daf65cddb798c https://www.encodeproject.org/files/ENCFF283IFS/@@download/ENCFF283IFS.bigBed hg19 released mild to moderate bottlenecking ENCFF252KMY bigBed narrowPeak conservative idr thresholded peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF353GUG 1024670 ENCODE Processing Pipeline 27ba2553d50b9b8812ad6b696b8b1f1a https://www.encodeproject.org/files/ENCFF252KMY/@@download/ENCFF252KMY.bigBed hg19 released mild to moderate bottlenecking ENCFF405KNH bam unfiltered alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF670UOV, ENCFF807MUK, ENCFF841OOC 4052596893 ENCODE Processing Pipeline 133e2a69b22b389e086bcbba15f6f342 https://www.encodeproject.org/files/ENCFF405KNH/@@download/ENCFF405KNH.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF454PCU bam unfiltered alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF058FFZ, ENCFF674GQJ, ENCFF807MUK 4244195615 ENCODE Processing Pipeline b9a1881ccfb11f905bab70098189e021 https://www.encodeproject.org/files/ENCFF454PCU/@@download/ENCFF454PCU.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF670UOV fastq reads ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF841OOC 1879994175 Michael Snyder, Stanford dec7b551a8c3cdcfc86917b69719d17c https://www.encodeproject.org/files/ENCFF670UOV/@@download/ENCFF670UOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF058FFZ fastq reads ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF674GQJ 1936004523 Michael Snyder, Stanford fbf194655f43439cfe93251c1cc0cca3 https://www.encodeproject.org/files/ENCFF058FFZ/@@download/ENCFF058FFZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF674GQJ fastq reads ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF058FFZ 1996738333 Michael Snyder, Stanford d45bcccd21c4aae33ea9c76c009d2d81 https://www.encodeproject.org/files/ENCFF674GQJ/@@download/ENCFF674GQJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF841OOC fastq reads ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF670UOV 1823435356 Michael Snyder, Stanford fe7f8b9f5817ad7341598947b262e769 https://www.encodeproject.org/files/ENCFF841OOC/@@download/ENCFF841OOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF446LZB bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF670UOV, ENCFF807MUK, ENCFF841OOC 3447122804 ENCODE Processing Pipeline c7bcfb102866a0051954179a209aa3e8 https://www.encodeproject.org/files/ENCFF446LZB/@@download/ENCFF446LZB.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF264TYT bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF058FFZ, ENCFF674GQJ, ENCFF807MUK 3559327177 ENCODE Processing Pipeline 38dc8ea35b12837bc2a7237614cfb64d https://www.encodeproject.org/files/ENCFF264TYT/@@download/ENCFF264TYT.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF841ZQJ bigWig signal p-value ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF264TYT, ENCFF581ZJL 1049805385 ENCODE Processing Pipeline 5b14c4b029892f9457b99b59351f81e2 https://www.encodeproject.org/files/ENCFF841ZQJ/@@download/ENCFF841ZQJ.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF618BDB bigWig signal p-value ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF446LZB 989099454 ENCODE Processing Pipeline c3181bd1978247c359cbc43a85fdc8fa https://www.encodeproject.org/files/ENCFF618BDB/@@download/ENCFF618BDB.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF610TLR bigWig signal p-value ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264TYT, ENCFF446LZB, ENCFF581ZJL 1870982104 ENCODE Processing Pipeline 3772c0e11186aea0f73dbfbe106ee4ee https://www.encodeproject.org/files/ENCFF610TLR/@@download/ENCFF610TLR.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF452WGO bigWig fold change over control ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF264TYT, ENCFF581ZJL 1074390041 ENCODE Processing Pipeline 38114008da5ca49bd8c723b3cdc8e4c0 https://www.encodeproject.org/files/ENCFF452WGO/@@download/ENCFF452WGO.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF545XLF bigWig fold change over control ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF446LZB 982024719 ENCODE Processing Pipeline d58269f9e3d68da9f38e6ef4c93266a5 https://www.encodeproject.org/files/ENCFF545XLF/@@download/ENCFF545XLF.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF685ZXF bigWig fold change over control ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264TYT, ENCFF446LZB, ENCFF581ZJL 1934992895 ENCODE Processing Pipeline 2376675fa2746ac6c2887fc9882afdcf https://www.encodeproject.org/files/ENCFF685ZXF/@@download/ENCFF685ZXF.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF729LTY bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF264TYT, ENCFF581ZJL 7099146 ENCODE Processing Pipeline 628d0b785b60b2ee6aac7fdeaa4cb08a https://www.encodeproject.org/files/ENCFF729LTY/@@download/ENCFF729LTY.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF230UQS bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF446LZB 7020305 ENCODE Processing Pipeline 18561f1925c356adf0aafbf3d0f97ce9 https://www.encodeproject.org/files/ENCFF230UQS/@@download/ENCFF230UQS.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF255HKN bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264TYT, ENCFF446LZB, ENCFF581ZJL 7173879 ENCODE Processing Pipeline aeb881b6ecc4466d1162b9536295e499 https://www.encodeproject.org/files/ENCFF255HKN/@@download/ENCFF255HKN.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF204WPK bigBed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF230UQS 12660387 ENCODE Processing Pipeline 973a5012ed7f9ed16969f410dae68989 https://www.encodeproject.org/files/ENCFF204WPK/@@download/ENCFF204WPK.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF930RQX bigBed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF255HKN 12245687 ENCODE Processing Pipeline a5412ddfa564a6bcbb0368c7d6a76799 https://www.encodeproject.org/files/ENCFF930RQX/@@download/ENCFF930RQX.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF326BMX bigBed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF729LTY 12550550 ENCODE Processing Pipeline ddf46e1665d09cefd5cb1cd7e8fec3e1 https://www.encodeproject.org/files/ENCFF326BMX/@@download/ENCFF326BMX.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF156DTP bam unfiltered alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF670UOV, ENCFF841OOC 4055499752 ENCODE Processing Pipeline df0a05705cd0cc847f61bbebd1505ef3 https://www.encodeproject.org/files/ENCFF156DTP/@@download/ENCFF156DTP.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF343TJV bam unfiltered alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF058FFZ, ENCFF643CGH, ENCFF674GQJ 4246979821 ENCODE Processing Pipeline 86c9c9f06524c6c85d8753566b80a1cb https://www.encodeproject.org/files/ENCFF343TJV/@@download/ENCFF343TJV.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF995XZH bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF670UOV, ENCFF841OOC 3450086582 ENCODE Processing Pipeline f13fd3791ee5bc7302511dbb116b3fb7 https://www.encodeproject.org/files/ENCFF995XZH/@@download/ENCFF995XZH.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF877RVZ bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF058FFZ, ENCFF643CGH, ENCFF674GQJ 3562573023 ENCODE Processing Pipeline 37d2259cbdcd802eef322b188bdcdea1 https://www.encodeproject.org/files/ENCFF877RVZ/@@download/ENCFF877RVZ.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF377CEZ bigWig signal p-value ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF877RVZ, ENCFF910IKB 1031297292 ENCODE Processing Pipeline b51edd4568de5ab677aa523734fcfa9d https://www.encodeproject.org/files/ENCFF377CEZ/@@download/ENCFF377CEZ.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF814SMU bigWig signal p-value ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF995XZH 934123986 ENCODE Processing Pipeline 247a9f860ef9cad6817e34361ccaf479 https://www.encodeproject.org/files/ENCFF814SMU/@@download/ENCFF814SMU.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF286BLX bigWig signal p-value ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF877RVZ, ENCFF910IKB, ENCFF995XZH 1883114618 ENCODE Processing Pipeline 225fe86f17591ff454b885b0b802ebd7 https://www.encodeproject.org/files/ENCFF286BLX/@@download/ENCFF286BLX.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF074MCV bigWig fold change over control ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF877RVZ, ENCFF910IKB 1052559580 ENCODE Processing Pipeline e4efbaa960f1ead90e153d85a138c434 https://www.encodeproject.org/files/ENCFF074MCV/@@download/ENCFF074MCV.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF582HMX bigWig fold change over control ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF995XZH 977236504 ENCODE Processing Pipeline 60c571f190562e004e3af232f1fbd3e4 https://www.encodeproject.org/files/ENCFF582HMX/@@download/ENCFF582HMX.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF300YKS bigWig fold change over control ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF877RVZ, ENCFF910IKB, ENCFF995XZH 1896523858 ENCODE Processing Pipeline 50b255d8f9d23bc42b6cb7f0362db08c https://www.encodeproject.org/files/ENCFF300YKS/@@download/ENCFF300YKS.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF222TPO bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF877RVZ, ENCFF910IKB 7026204 ENCODE Processing Pipeline 389c879849e9dd9b40d8ea053ab24beb https://www.encodeproject.org/files/ENCFF222TPO/@@download/ENCFF222TPO.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF614AUL bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF995XZH 6943742 ENCODE Processing Pipeline 247a67bf24d33228074839a7f4f8dfec https://www.encodeproject.org/files/ENCFF614AUL/@@download/ENCFF614AUL.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF269WRB bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF877RVZ, ENCFF910IKB, ENCFF995XZH 7176619 ENCODE Processing Pipeline d6d54db68ac950eddad7b7d5a5426af0 https://www.encodeproject.org/files/ENCFF269WRB/@@download/ENCFF269WRB.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF074KAF bigBed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF222TPO 12531261 ENCODE Processing Pipeline a4718e570b02cad7ed19a155afc731ae https://www.encodeproject.org/files/ENCFF074KAF/@@download/ENCFF074KAF.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF979JSU bigBed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF614AUL 12656059 ENCODE Processing Pipeline 96fd058bbb0e80a1de201bfacd968380 https://www.encodeproject.org/files/ENCFF979JSU/@@download/ENCFF979JSU.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF207UXX bigBed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF269WRB 12257002 ENCODE Processing Pipeline 538818f2c40255cc26ed3caaf8006a03 https://www.encodeproject.org/files/ENCFF207UXX/@@download/ENCFF207UXX.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF779AZS bed narrowPeak conservative idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF222TPO, ENCFF269WRB, ENCFF419RSJ, ENCFF614AUL 337019 ENCODE Processing Pipeline 82209c8de6a76362a080542762c61bd2 https://www.encodeproject.org/files/ENCFF779AZS/@@download/ENCFF779AZS.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF988KJQ bigBed narrowPeak conservative idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF779AZS 852380 ENCODE Processing Pipeline f7211a7175a17b650c1cdb33f98c981a https://www.encodeproject.org/files/ENCFF988KJQ/@@download/ENCFF988KJQ.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF078TXM bed narrowPeak optimal idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF222TPO, ENCFF269WRB, ENCFF419RSJ, ENCFF614AUL 374704 ENCODE Processing Pipeline cf30fcf78bc41a9d0703a890940edb6b https://www.encodeproject.org/files/ENCFF078TXM/@@download/ENCFF078TXM.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF362HAC bigBed narrowPeak optimal idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF078TXM 927749 ENCODE Processing Pipeline 525c6c541afd611998f40490241505a4 https://www.encodeproject.org/files/ENCFF362HAC/@@download/ENCFF362HAC.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF872JJJ bed narrowPeak optimal idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF230UQS, ENCFF255HKN, ENCFF729LTY 333967 ENCODE Processing Pipeline 4fa731cb3c8d39c1c5bd2b21cd149768 https://www.encodeproject.org/files/ENCFF872JJJ/@@download/ENCFF872JJJ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF208SDV bigBed narrowPeak optimal idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF872JJJ 702824 ENCODE Processing Pipeline c6dd66b70c9ec20c77b9b1b7d1ace8e3 https://www.encodeproject.org/files/ENCFF208SDV/@@download/ENCFF208SDV.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF810SHF bed narrowPeak conservative idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF230UQS, ENCFF255HKN, ENCFF729LTY 292155 ENCODE Processing Pipeline 8f4cc64e7f84be32683849bdaebe11af https://www.encodeproject.org/files/ENCFF810SHF/@@download/ENCFF810SHF.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF954DTY bigBed narrowPeak conservative idr thresholded peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF810SHF 640695 ENCODE Processing Pipeline ef06de9b3f93a81f1bc4adf22544824c https://www.encodeproject.org/files/ENCFF954DTY/@@download/ENCFF954DTY.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF808VYQ bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 839109796 ENCODE Processing Pipeline 5eb4e49f8a22f284ae8f9982705e96a5 https://www.encodeproject.org/files/ENCFF808VYQ/@@download/ENCFF808VYQ.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF371SQG bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 679642497 ENCODE Processing Pipeline 77380c81bcc7cd56a6bf50c873e8b5d5 https://www.encodeproject.org/files/ENCFF371SQG/@@download/ENCFF371SQG.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF685PNE bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF226JIO, ENCFF654EHF, ENCFF991UTU 952103499 ENCODE Processing Pipeline 4b2cfd60ea035cbe3b0481b601ad3aa8 https://www.encodeproject.org/files/ENCFF685PNE/@@download/ENCFF685PNE.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF281KPK bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF226JIO, ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 1060310486 ENCODE Processing Pipeline fa3e06876096b7733a5a457fddcdbb21 https://www.encodeproject.org/files/ENCFF281KPK/@@download/ENCFF281KPK.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF052DUY bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF226JIO, ENCFF654EHF, ENCFF991UTU 869172787 ENCODE Processing Pipeline 3e36bb1b734e3a0805cab87c22523b97 https://www.encodeproject.org/files/ENCFF052DUY/@@download/ENCFF052DUY.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF879HWY bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF226JIO, ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 1187946995 ENCODE Processing Pipeline fca51adfd2055edb988eda44d28ae045 https://www.encodeproject.org/files/ENCFF879HWY/@@download/ENCFF879HWY.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF435XEZ bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 6362369 ENCODE Processing Pipeline 0be7388e3daa3282e816f915b1749e17 https://www.encodeproject.org/files/ENCFF435XEZ/@@download/ENCFF435XEZ.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF683XUE bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF226JIO, ENCFF654EHF, ENCFF991UTU 6640502 ENCODE Processing Pipeline a92ccb7ce2085187d5b8fb784cc26d1a https://www.encodeproject.org/files/ENCFF683XUE/@@download/ENCFF683XUE.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF917NOB bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF226JIO, ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 6893580 ENCODE Processing Pipeline 7b6d409f4e3deb0bb0c8b3ec632cba47 https://www.encodeproject.org/files/ENCFF917NOB/@@download/ENCFF917NOB.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF917GIK bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF435XEZ 13089373 ENCODE Processing Pipeline dd23e106eb42ed06e11354b06ce0b17e https://www.encodeproject.org/files/ENCFF917GIK/@@download/ENCFF917GIK.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF571WPL bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF683XUE 13342283 ENCODE Processing Pipeline a739eb835fe1948386d582a6a0883b47 https://www.encodeproject.org/files/ENCFF571WPL/@@download/ENCFF571WPL.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF211FVC bed narrowPeak conservative idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF435XEZ, ENCFF683XUE, ENCFF917NOB 537563 ENCODE Processing Pipeline 0db6e4837397e8144746decf2370f46d https://www.encodeproject.org/files/ENCFF211FVC/@@download/ENCFF211FVC.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF111KHX bigBed narrowPeak conservative idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF211FVC 1026177 ENCODE Processing Pipeline b84ded370872d2831671bc844e518b22 https://www.encodeproject.org/files/ENCFF111KHX/@@download/ENCFF111KHX.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF874NRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF851HUJ 1028298 ENCODE Processing Pipeline 382aca6e71fd6f167c408a94f0f49208 https://www.encodeproject.org/files/ENCFF874NRZ/@@download/ENCFF874NRZ.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF350JME bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF917NOB 13215991 ENCODE Processing Pipeline b9ad805fb1fdbb8ac13f4f5e4f25a978 https://www.encodeproject.org/files/ENCFF350JME/@@download/ENCFF350JME.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF851HUJ bed narrowPeak optimal idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF435XEZ, ENCFF683XUE, ENCFF917NOB 536405 ENCODE Processing Pipeline b5663d4401ea20f7753e2b2485e7e4ae https://www.encodeproject.org/files/ENCFF851HUJ/@@download/ENCFF851HUJ.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF769ICW fastq reads ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 1 50 single-ended 1460220366 Richard Myers, HAIB 4b8b1559f8ada4eaedd15062cd285234 SRA:SRR5339662 https://www.encodeproject.org/files/ENCFF769ICW/@@download/ENCFF769ICW.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF188ZYE fastq reads ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 1 50 single-ended 773437785 Richard Myers, HAIB 0338429bd16137142debb1bc4ad815d8 SRA:SRR5339661 https://www.encodeproject.org/files/ENCFF188ZYE/@@download/ENCFF188ZYE.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF776IMT bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF807MUK 664998125 ENCODE Processing Pipeline 94015738bef00c905b8093d5bb9a0bd0 https://www.encodeproject.org/files/ENCFF776IMT/@@download/ENCFF776IMT.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF805KOB bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF769ICW, ENCFF807MUK 1199184691 ENCODE Processing Pipeline 563fd495c4ec69cda385dc677d313a70 https://www.encodeproject.org/files/ENCFF805KOB/@@download/ENCFF805KOB.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF922MJG bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF654EHF, ENCFF776IMT, ENCFF805KOB, ENCFF991UTU 1181603649 ENCODE Processing Pipeline 61359517c07aaddb777f50f4d4e9a1b6 https://www.encodeproject.org/files/ENCFF922MJG/@@download/ENCFF922MJG.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF700FGO bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF776IMT, ENCFF991UTU 832559794 ENCODE Processing Pipeline 683a33e74212fc8655b2c421b45a60b2 https://www.encodeproject.org/files/ENCFF700FGO/@@download/ENCFF700FGO.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF307EAB bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF654EHF, ENCFF776IMT, ENCFF805KOB, ENCFF991UTU 1056294787 ENCODE Processing Pipeline 4aef4e99c2405d43a7a9a4bda164e57d https://www.encodeproject.org/files/ENCFF307EAB/@@download/ENCFF307EAB.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF883GIY bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF805KOB, ENCFF991UTU 955639882 ENCODE Processing Pipeline b0625bdfee66026b3e9102ea0bc95e38 https://www.encodeproject.org/files/ENCFF883GIY/@@download/ENCFF883GIY.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF633YHS bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF805KOB, ENCFF991UTU 876517941 ENCODE Processing Pipeline ece0536876033d7e50f7ac728edd2999 https://www.encodeproject.org/files/ENCFF633YHS/@@download/ENCFF633YHS.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF295IKV bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF579AYO 13097208 ENCODE Processing Pipeline 67ab36092178edff892648c995ad5907 https://www.encodeproject.org/files/ENCFF295IKV/@@download/ENCFF295IKV.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF033ZJQ bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF642PNJ 13347501 ENCODE Processing Pipeline a599bd8067dedeacdb6c9ab3b6b9db68 https://www.encodeproject.org/files/ENCFF033ZJQ/@@download/ENCFF033ZJQ.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF428MAV bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF396QYK 13217570 ENCODE Processing Pipeline b9cadaa3a600c7fcae4a8a25486b79c1 https://www.encodeproject.org/files/ENCFF428MAV/@@download/ENCFF428MAV.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF045WZW bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF776IMT, ENCFF991UTU 669875978 ENCODE Processing Pipeline 34080185ec423e7cce3169c89d66695a https://www.encodeproject.org/files/ENCFF045WZW/@@download/ENCFF045WZW.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF396QYK bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF654EHF, ENCFF776IMT, ENCFF805KOB, ENCFF991UTU 6979244 ENCODE Processing Pipeline 658e252cf72ec4a16065ef0e57aaf02f https://www.encodeproject.org/files/ENCFF396QYK/@@download/ENCFF396QYK.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF579AYO bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF776IMT, ENCFF991UTU 6497543 ENCODE Processing Pipeline edb26bc092e26f4bc99fed9e119d9990 https://www.encodeproject.org/files/ENCFF579AYO/@@download/ENCFF579AYO.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF642PNJ bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF805KOB, ENCFF991UTU 6798252 ENCODE Processing Pipeline 26d75710470840306cb32104ceea008c https://www.encodeproject.org/files/ENCFF642PNJ/@@download/ENCFF642PNJ.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF637UGC bam unfiltered alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF807MUK 853399389 ENCODE Processing Pipeline 847d117a1eecd03aaf118970010df081 https://www.encodeproject.org/files/ENCFF637UGC/@@download/ENCFF637UGC.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF772NWF bam unfiltered alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF769ICW, ENCFF807MUK 1614530005 ENCODE Processing Pipeline 9c39efbb0b12f19fad9dcb03d1eea99c https://www.encodeproject.org/files/ENCFF772NWF/@@download/ENCFF772NWF.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF567MOA bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF807MUK 664998153 ENCODE Processing Pipeline b6ef2a0b32f524937a7286de6b30cc39 https://www.encodeproject.org/files/ENCFF567MOA/@@download/ENCFF567MOA.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF226JIO bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF769ICW, ENCFF807MUK 1199184720 ENCODE Processing Pipeline 007a10b14c1a3a767be39fab57f36900 https://www.encodeproject.org/files/ENCFF226JIO/@@download/ENCFF226JIO.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF525UUL bam unfiltered alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF643CGH 857030000 ENCODE Processing Pipeline 811caabfa988f5ff4fdc1d310b1fcecb https://www.encodeproject.org/files/ENCFF525UUL/@@download/ENCFF525UUL.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF028ZVJ bam unfiltered alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF643CGH, ENCFF769ICW 1621643142 ENCODE Processing Pipeline 0211bdf49c4e0811b4987944b7c6f413 https://www.encodeproject.org/files/ENCFF028ZVJ/@@download/ENCFF028ZVJ.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF550RLX bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF643CGH 664892396 ENCODE Processing Pipeline ada4f8845b3e64771c49740ca232a28f https://www.encodeproject.org/files/ENCFF550RLX/@@download/ENCFF550RLX.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF686NVV bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF643CGH, ENCFF769ICW 1199170132 ENCODE Processing Pipeline 123419aaa1fcd34c90a241bf9d8fcf7b https://www.encodeproject.org/files/ENCFF686NVV/@@download/ENCFF686NVV.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF943IUG bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF370PSF, ENCFF686NVV, ENCFF995OIG 978607038 ENCODE Processing Pipeline 3bb497e40ffd9bcd7ec085d282a79c77 https://www.encodeproject.org/files/ENCFF943IUG/@@download/ENCFF943IUG.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF501KAM bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF370PSF, ENCFF550RLX, ENCFF995OIG 854906800 ENCODE Processing Pipeline c7d0a386bfeb30cd056d691df5ea4e13 https://www.encodeproject.org/files/ENCFF501KAM/@@download/ENCFF501KAM.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF198XEN bigWig signal p-value ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF370PSF, ENCFF550RLX, ENCFF686NVV, ENCFF995OIG 1035768807 ENCODE Processing Pipeline b36bbe074a9a3fd542d7620414f0a674 https://www.encodeproject.org/files/ENCFF198XEN/@@download/ENCFF198XEN.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF545KFB bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF370PSF, ENCFF550RLX, ENCFF995OIG 669480637 ENCODE Processing Pipeline 934383c15bf371aec33c0d65ee6411f6 https://www.encodeproject.org/files/ENCFF545KFB/@@download/ENCFF545KFB.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF494UDV bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF370PSF, ENCFF686NVV, ENCFF995OIG 847917337 ENCODE Processing Pipeline fdb51ee5717d66aa9c3d5f93b9d62e64 https://www.encodeproject.org/files/ENCFF494UDV/@@download/ENCFF494UDV.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF152LUE bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF370PSF, ENCFF550RLX, ENCFF995OIG 6323381 ENCODE Processing Pipeline 039700d75fa3551932b8724d8cd43c57 https://www.encodeproject.org/files/ENCFF152LUE/@@download/ENCFF152LUE.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF152OQL bigWig fold change over control ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF370PSF, ENCFF550RLX, ENCFF686NVV, ENCFF995OIG 1204182015 ENCODE Processing Pipeline e5d6f8e32490de44af31d3ff7b427180 https://www.encodeproject.org/files/ENCFF152OQL/@@download/ENCFF152OQL.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF478PUG bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF370PSF, ENCFF686NVV, ENCFF995OIG 6609895 ENCODE Processing Pipeline fba4bb0e56c56a5b4d973cc2d3bc8ce3 https://www.encodeproject.org/files/ENCFF478PUG/@@download/ENCFF478PUG.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF311ATO bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF152LUE 13049515 ENCODE Processing Pipeline 788e812be3a9dd3eb7739ba925a933a0 https://www.encodeproject.org/files/ENCFF311ATO/@@download/ENCFF311ATO.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF720EBM bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF370PSF, ENCFF550RLX, ENCFF686NVV, ENCFF995OIG 6859158 ENCODE Processing Pipeline ca5dd8316748345e0dfa756a24117a3c https://www.encodeproject.org/files/ENCFF720EBM/@@download/ENCFF720EBM.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF838VFX bed narrowPeak optimal idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF152LUE, ENCFF419RSJ, ENCFF478PUG, ENCFF720EBM 542676 ENCODE Processing Pipeline 96df6fc0ed16c24d7af0c1b36bf582c1 https://www.encodeproject.org/files/ENCFF838VFX/@@download/ENCFF838VFX.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF787VLV bigBed narrowPeak optimal idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF838VFX 1035265 ENCODE Processing Pipeline fe9ae39c0909bfb0c988e152f703021c https://www.encodeproject.org/files/ENCFF787VLV/@@download/ENCFF787VLV.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF092EHP bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF478PUG 13315153 ENCODE Processing Pipeline 76b1a3486c612df40cd74ad74f0f817d https://www.encodeproject.org/files/ENCFF092EHP/@@download/ENCFF092EHP.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF284PPQ bigBed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF720EBM 13196061 ENCODE Processing Pipeline 6b32247f9cf8aeb2a8e21458c1bd9ea7 https://www.encodeproject.org/files/ENCFF284PPQ/@@download/ENCFF284PPQ.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF802JZI bigBed narrowPeak conservative idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF805MUO 1020683 ENCODE Processing Pipeline 12bbfb4c8ae5493f434915340eb33c99 https://www.encodeproject.org/files/ENCFF802JZI/@@download/ENCFF802JZI.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF805MUO bed narrowPeak conservative idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF152LUE, ENCFF419RSJ, ENCFF478PUG, ENCFF720EBM 533979 ENCODE Processing Pipeline 462b6bc38b4a67bc559bb16c7ba57618 https://www.encodeproject.org/files/ENCFF805MUO/@@download/ENCFF805MUO.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF454LWY bigBed narrowPeak conservative idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF089DNN 953050 ENCODE Processing Pipeline fe8c1f28bb40c4c177449ec5086cb353 https://www.encodeproject.org/files/ENCFF454LWY/@@download/ENCFF454LWY.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF214QUX bed narrowPeak optimal idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF396QYK, ENCFF579AYO, ENCFF642PNJ 501080 ENCODE Processing Pipeline 7371981ddd260e640ca4863cbb1d94bd https://www.encodeproject.org/files/ENCFF214QUX/@@download/ENCFF214QUX.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF438BIL bigBed narrowPeak optimal idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF214QUX 976277 ENCODE Processing Pipeline f89053e6d25cad6f478e7c096fec2441 https://www.encodeproject.org/files/ENCFF438BIL/@@download/ENCFF438BIL.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF089DNN bed narrowPeak conservative idr thresholded peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF396QYK, ENCFF579AYO, ENCFF642PNJ 484985 ENCODE Processing Pipeline 30fcce1f583fef4225344ba217fd98ed https://www.encodeproject.org/files/ENCFF089DNN/@@download/ENCFF089DNN.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF655PTL bam unfiltered alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPF, ENCFF002EFZ, ENCFF807MUK 5713790785 ENCODE Processing Pipeline e68bf6bb8dc11eaec7b792b46b8651bb https://www.encodeproject.org/files/ENCFF655PTL/@@download/ENCFF655PTL.bam hg19 released mild to moderate bottlenecking ENCFF883WVV bam unfiltered alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPA, ENCFF002EFX, ENCFF807MUK 5108310852 ENCODE Processing Pipeline 410f16fb0287372dd93be6489fe8681a https://www.encodeproject.org/files/ENCFF883WVV/@@download/ENCFF883WVV.bam hg19 released mild to moderate bottlenecking ENCFF405QFN bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 1539243380 ENCODE Processing Pipeline db9d49409bd68a574497318cdecf7a0b https://www.encodeproject.org/files/ENCFF405QFN/@@download/ENCFF405QFN.bigWig hg19 released mild to moderate bottlenecking ENCFF002DPA fastq reads ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EFX 2532879648 Michael Snyder, Stanford b4770ffe49382961d13fc002c7bb7f85 SRA:SRR5112381 https://www.encodeproject.org/files/ENCFF002DPA/@@download/ENCFF002DPA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF002DPF fastq reads ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EFZ 2864834526 Michael Snyder, Stanford 792c3680f9eb5e479c1987927e65f22e SRA:SRR5112382 https://www.encodeproject.org/files/ENCFF002DPF/@@download/ENCFF002DPF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF002EFX fastq reads ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPA 2611936006 Michael Snyder, Stanford e7a35dff04c18e373eaef6e90d73d8db SRA:SRR5112381 https://www.encodeproject.org/files/ENCFF002EFX/@@download/ENCFF002EFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF002EFZ fastq reads ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPF 2799065029 Michael Snyder, Stanford 445cc7cbda8e80e9bbe5bfaeca1f709b SRA:SRR5112382 https://www.encodeproject.org/files/ENCFF002EFZ/@@download/ENCFF002EFZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF966TQS bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 1954051218 ENCODE Processing Pipeline aac4b21ce79816a0b3451b924dc1c141 https://www.encodeproject.org/files/ENCFF966TQS/@@download/ENCFF966TQS.bigWig hg19 released mild to moderate bottlenecking ENCFF113EKC bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 6766643 ENCODE Processing Pipeline 004b8c0ba595469c62a2df0a692f1732 https://www.encodeproject.org/files/ENCFF113EKC/@@download/ENCFF113EKC.bed.gz hg19 released mild to moderate bottlenecking ENCFF657EBT bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF113EKC 13201688 ENCODE Processing Pipeline daa58adf05567ab1195667a2cbb307ec https://www.encodeproject.org/files/ENCFF657EBT/@@download/ENCFF657EBT.bigBed hg19 released mild to moderate bottlenecking ENCFF288BMB bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6894601 ENCODE Processing Pipeline 3001eca0f6ac4c5cc4f2cb18927cab12 https://www.encodeproject.org/files/ENCFF288BMB/@@download/ENCFF288BMB.bed.gz hg19 released mild to moderate bottlenecking ENCFF406JKC bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 7143616 ENCODE Processing Pipeline b8def5f6e578dcf33f82a4d9ce98f8a0 https://www.encodeproject.org/files/ENCFF406JKC/@@download/ENCFF406JKC.bed.gz hg19 released mild to moderate bottlenecking ENCFF774YNB bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF288BMB 13189179 ENCODE Processing Pipeline d2064f91840cf4683c14521f76e0377a https://www.encodeproject.org/files/ENCFF774YNB/@@download/ENCFF774YNB.bigBed hg19 released mild to moderate bottlenecking ENCFF816USM bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF406JKC 13041560 ENCODE Processing Pipeline d8d416cfb1f203dfc5bd933c84e6e8e5 https://www.encodeproject.org/files/ENCFF816USM/@@download/ENCFF816USM.bigBed hg19 released mild to moderate bottlenecking ENCFF836FKF bed narrowPeak conservative idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF113EKC, ENCFF288BMB, ENCFF406JKC 641086 ENCODE Processing Pipeline bd7288a70c296c891df464f23e50559e https://www.encodeproject.org/files/ENCFF836FKF/@@download/ENCFF836FKF.bed.gz hg19 released mild to moderate bottlenecking ENCFF616OKD bigBed narrowPeak conservative idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF836FKF 1159518 ENCODE Processing Pipeline 9ca4eec38c882b524327a0480428b935 https://www.encodeproject.org/files/ENCFF616OKD/@@download/ENCFF616OKD.bigBed hg19 released mild to moderate bottlenecking ENCFF493ABN bed narrowPeak optimal idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF113EKC, ENCFF288BMB, ENCFF406JKC 684973 ENCODE Processing Pipeline d5fff8c03ee7b8067da264cb490f4327 https://www.encodeproject.org/files/ENCFF493ABN/@@download/ENCFF493ABN.bed.gz hg19 released mild to moderate bottlenecking ENCFF563JEN bigBed narrowPeak optimal idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF493ABN 1230855 ENCODE Processing Pipeline 127d0c8b5729f2ff62f68c55f0fe12e5 https://www.encodeproject.org/files/ENCFF563JEN/@@download/ENCFF563JEN.bigBed hg19 released mild to moderate bottlenecking ENCFF986GTB bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPF, ENCFF002EFZ, ENCFF807MUK 4802295089 ENCODE Processing Pipeline eddb474b557c2506a936f5d7d9e21f8c https://www.encodeproject.org/files/ENCFF986GTB/@@download/ENCFF986GTB.bam hg19 released mild to moderate bottlenecking ENCFF615FDE bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPA, ENCFF002EFX, ENCFF807MUK 4393017795 ENCODE Processing Pipeline 5cc8856b1225ffc3318ae237ea0cdc30 https://www.encodeproject.org/files/ENCFF615FDE/@@download/ENCFF615FDE.bam hg19 released mild to moderate bottlenecking ENCFF036DUA bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 887136400 ENCODE Processing Pipeline 492419d6a8f0f8c30f95dde5a792d1b3 https://www.encodeproject.org/files/ENCFF036DUA/@@download/ENCFF036DUA.bigWig hg19 released mild to moderate bottlenecking ENCFF931KMU bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 1020917327 ENCODE Processing Pipeline 0ddd30e299c0fab7d369f02981e02c19 https://www.encodeproject.org/files/ENCFF931KMU/@@download/ENCFF931KMU.bigWig hg19 released mild to moderate bottlenecking ENCFF713PLO bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 1537456036 ENCODE Processing Pipeline 82b6a29f7ce85486603d9e09c17b6e8f https://www.encodeproject.org/files/ENCFF713PLO/@@download/ENCFF713PLO.bigWig hg19 archived mild to moderate bottlenecking ENCFF744SAJ bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 1033172151 ENCODE Processing Pipeline 1d1f0bc51423316d090add0ef6b0e5d9 https://www.encodeproject.org/files/ENCFF744SAJ/@@download/ENCFF744SAJ.bigWig hg19 released mild to moderate bottlenecking ENCFF897ZRQ bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 1114400258 ENCODE Processing Pipeline 17597962aea0d46139343e70228d8a05 https://www.encodeproject.org/files/ENCFF897ZRQ/@@download/ENCFF897ZRQ.bigWig hg19 released mild to moderate bottlenecking ENCFF328DWU bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 1945762963 ENCODE Processing Pipeline 48d7ef49cb6cbf52928ad44dba8b93c8 https://www.encodeproject.org/files/ENCFF328DWU/@@download/ENCFF328DWU.bigWig hg19 archived mild to moderate bottlenecking ENCFF295YFY bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF978MYZ 13044638 ENCODE Processing Pipeline 6429d345b35e82d271ae2f10dac7a434 https://www.encodeproject.org/files/ENCFF295YFY/@@download/ENCFF295YFY.bigBed hg19 archived mild to moderate bottlenecking ENCFF010NSU bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF263SML 13203945 ENCODE Processing Pipeline 668bfb831e1548e541004e21a02d6be3 https://www.encodeproject.org/files/ENCFF010NSU/@@download/ENCFF010NSU.bigBed hg19 archived mild to moderate bottlenecking ENCFF219SON bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF138RWJ 13191214 ENCODE Processing Pipeline e754ac876601d782cfdacdcde5c7ffb1 https://www.encodeproject.org/files/ENCFF219SON/@@download/ENCFF219SON.bigBed hg19 archived mild to moderate bottlenecking ENCFF138RWJ bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6970449 ENCODE Processing Pipeline afd34a6b4a486fa0b6feb85b2992031d https://www.encodeproject.org/files/ENCFF138RWJ/@@download/ENCFF138RWJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF263SML bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 6840897 ENCODE Processing Pipeline 3d9c51ef3db7280749befdb5d623ea1f https://www.encodeproject.org/files/ENCFF263SML/@@download/ENCFF263SML.bed.gz hg19 archived mild to moderate bottlenecking ENCFF978MYZ bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 7149174 ENCODE Processing Pipeline d608454c08c8de0f51d7972f7aca6387 https://www.encodeproject.org/files/ENCFF978MYZ/@@download/ENCFF978MYZ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF564CXM bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPA, ENCFF002EFX, ENCFF643CGH 4394573976 ENCODE Processing Pipeline c6a3a7c490d60a8995709d5f9f9cc216 https://www.encodeproject.org/files/ENCFF564CXM/@@download/ENCFF564CXM.bam GRCh38 released mild to moderate bottlenecking ENCFF675LCH bam unfiltered alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPF, ENCFF002EFZ, ENCFF643CGH 5717512899 ENCODE Processing Pipeline 3e75ff9357191c1436b7476c0fd9c1b0 https://www.encodeproject.org/files/ENCFF675LCH/@@download/ENCFF675LCH.bam GRCh38 released mild to moderate bottlenecking ENCFF933GGT bam unfiltered alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPA, ENCFF002EFX, ENCFF643CGH 5110371038 ENCODE Processing Pipeline 3c8e01b7dc0fac1baaeb2948d02c1bcd https://www.encodeproject.org/files/ENCFF933GGT/@@download/ENCFF933GGT.bam GRCh38 released mild to moderate bottlenecking ENCFF722LJA bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPF, ENCFF002EFZ, ENCFF643CGH 4804881345 ENCODE Processing Pipeline 76270d2182112cd6a4950e4f0a68ba57 https://www.encodeproject.org/files/ENCFF722LJA/@@download/ENCFF722LJA.bam GRCh38 released mild to moderate bottlenecking ENCFF552SBR bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF722LJA 6864653 ENCODE Processing Pipeline 96f2f1111693aeeb92783096181709ee https://www.encodeproject.org/files/ENCFF552SBR/@@download/ENCFF552SBR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF981BVY bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF722LJA 884105844 ENCODE Processing Pipeline 0d033b996759ca7ca220fb5dccc5f700 https://www.encodeproject.org/files/ENCFF981BVY/@@download/ENCFF981BVY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF271IWM bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF564CXM, ENCFF722LJA, ENCFF910IKB 1947371034 ENCODE Processing Pipeline aed94780b451eb15666de62c7a2e7356 https://www.encodeproject.org/files/ENCFF271IWM/@@download/ENCFF271IWM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF911DQZ bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF490KOA 13056224 ENCODE Processing Pipeline 0db14ae35baf7c0e2502487de3254bc0 https://www.encodeproject.org/files/ENCFF911DQZ/@@download/ENCFF911DQZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF849QQG bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF564CXM, ENCFF910IKB 904654726 ENCODE Processing Pipeline 82806a35b4ee30c8f32a2eabc9254047 https://www.encodeproject.org/files/ENCFF849QQG/@@download/ENCFF849QQG.bigWig GRCh38 released mild to moderate bottlenecking ENCFF385KDZ bigWig signal p-value ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF564CXM, ENCFF722LJA, ENCFF910IKB 1563038334 ENCODE Processing Pipeline 17e7e8bfdf9055b842f19302a3256a0c https://www.encodeproject.org/files/ENCFF385KDZ/@@download/ENCFF385KDZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF098QAR bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF564CXM, ENCFF910IKB 1040818879 ENCODE Processing Pipeline db17ce69b635a063970f914b98e53ec1 https://www.encodeproject.org/files/ENCFF098QAR/@@download/ENCFF098QAR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF645UIM bigWig fold change over control ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF722LJA 1104407043 ENCODE Processing Pipeline 0a6ba4f828729f0853d1d3afd74917db https://www.encodeproject.org/files/ENCFF645UIM/@@download/ENCFF645UIM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF387LCD bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF564CXM, ENCFF910IKB 6797676 ENCODE Processing Pipeline 2d46b9d2ef30b56f84e6f55f6e502621 https://www.encodeproject.org/files/ENCFF387LCD/@@download/ENCFF387LCD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF490KOA bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF564CXM, ENCFF722LJA, ENCFF910IKB 7136563 ENCODE Processing Pipeline 9e5056eaec2bc0f5d6ab1761c2e65245 https://www.encodeproject.org/files/ENCFF490KOA/@@download/ENCFF490KOA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF701HLA bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF387LCD 13283412 ENCODE Processing Pipeline bfb5e01ee6d8dbacca8910023e369e2e https://www.encodeproject.org/files/ENCFF701HLA/@@download/ENCFF701HLA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF739EUG bigBed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF552SBR 13166460 ENCODE Processing Pipeline 75d47e85307ab92036b088be6e71b264 https://www.encodeproject.org/files/ENCFF739EUG/@@download/ENCFF739EUG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF999GFD bigBed narrowPeak conservative idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF762NRN 1168229 ENCODE Processing Pipeline 0b2676741b9cbf81aac54c356d2b3065 https://www.encodeproject.org/files/ENCFF999GFD/@@download/ENCFF999GFD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF782YFS bed narrowPeak optimal idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF387LCD, ENCFF419RSJ, ENCFF490KOA, ENCFF552SBR 684837 ENCODE Processing Pipeline f22788b5a3d64f0348e8aa61bf92085c https://www.encodeproject.org/files/ENCFF782YFS/@@download/ENCFF782YFS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF920TBG bigBed narrowPeak optimal idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF782YFS 1237209 ENCODE Processing Pipeline b086da3b3e4bdbf0c7458fac388058f9 https://www.encodeproject.org/files/ENCFF920TBG/@@download/ENCFF920TBG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF762NRN bed narrowPeak conservative idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF387LCD, ENCFF419RSJ, ENCFF490KOA, ENCFF552SBR 643781 ENCODE Processing Pipeline 66af117f75856c31f1eef9c811eb6723 https://www.encodeproject.org/files/ENCFF762NRN/@@download/ENCFF762NRN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF002WSS bigBed narrowPeak conservative idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF905MTJ 1072846 ENCODE Processing Pipeline f25860c484757fba3ceedcf911a2237a https://www.encodeproject.org/files/ENCFF002WSS/@@download/ENCFF002WSS.bigBed hg19 archived mild to moderate bottlenecking ENCFF905MTJ bed narrowPeak conservative idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF138RWJ, ENCFF263SML, ENCFF978MYZ 566520 ENCODE Processing Pipeline 499de513bf3853402210c3ef992bde7c https://www.encodeproject.org/files/ENCFF905MTJ/@@download/ENCFF905MTJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF809MSQ bed narrowPeak optimal idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF138RWJ, ENCFF263SML, ENCFF978MYZ 603740 ENCODE Processing Pipeline c5c300d8c24705b1cf027b0ddc4468af https://www.encodeproject.org/files/ENCFF809MSQ/@@download/ENCFF809MSQ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF985BIH bigBed narrowPeak optimal idr thresholded peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF809MSQ 1133380 ENCODE Processing Pipeline 1b81b4c96bf34df6a69b46d881180771 https://www.encodeproject.org/files/ENCFF985BIH/@@download/ENCFF985BIH.bigBed hg19 archived mild to moderate bottlenecking ENCFF461DSK fastq reads ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF245QAX 1387111400 Richard Myers, HAIB 8f4439c8d1dbabb390501ca9d65a6b45 SRA:SRR6213830 https://www.encodeproject.org/files/ENCFF461DSK/@@download/ENCFF461DSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF951WSO/ released antibody characterized with exemption missing control alignments ENCFF245QAX fastq reads ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF461DSK 1415133262 Richard Myers, HAIB 22dc647f12bce3f55a467ead92a5caf3 SRA:SRR6213830 https://www.encodeproject.org/files/ENCFF245QAX/@@download/ENCFF245QAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF960XDG/ released antibody characterized with exemption missing control alignments ENCFF175OKZ bam unfiltered alignments ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF245QAX, ENCFF461DSK, ENCFF643CGH 3440938984 ENCODE Processing Pipeline d2311eb2173edc34c4f70838b7d11466 https://www.encodeproject.org/files/ENCFF175OKZ/@@download/ENCFF175OKZ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF542DGC bam unfiltered alignments ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF245QAX, ENCFF461DSK, ENCFF807MUK 3427732033 ENCODE Processing Pipeline 36fbefff167135f1054fc5604e067cd3 https://www.encodeproject.org/files/ENCFF542DGC/@@download/ENCFF542DGC.bam hg19 released antibody characterized with exemption missing control alignments ENCFF719ASG bam alignments ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF245QAX, ENCFF461DSK, ENCFF807MUK 2584802167 ENCODE Processing Pipeline 53135d487a230d142d9d9762da9011f4 https://www.encodeproject.org/files/ENCFF719ASG/@@download/ENCFF719ASG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF210CWN bam alignments ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF245QAX, ENCFF461DSK, ENCFF643CGH 2586302527 ENCODE Processing Pipeline 15b1d1966f32f73388282d6d99c13999 https://www.encodeproject.org/files/ENCFF210CWN/@@download/ENCFF210CWN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF312CPT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF291RDN 508006 ENCODE Processing Pipeline 627d8419452a6bc9ef527af2075f1c78 https://www.encodeproject.org/files/ENCFF312CPT/@@download/ENCFF312CPT.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF318HJW bigWig signal p-value ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF719ASG 814674404 ENCODE Processing Pipeline 62e7ee8ead6e036af3ad0c877a3c7cc7 https://www.encodeproject.org/files/ENCFF318HJW/@@download/ENCFF318HJW.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF218YPP bigBed narrowPeak peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF149EWP 11460498 ENCODE Processing Pipeline ae90b304646c502d4f981064d3658ce3 https://www.encodeproject.org/files/ENCFF218YPP/@@download/ENCFF218YPP.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF291RDN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF149EWP, ENCFF419RSJ 264626 ENCODE Processing Pipeline 942956b0f1a7614630124ad98e5ea812 https://www.encodeproject.org/files/ENCFF291RDN/@@download/ENCFF291RDN.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF275YIZ bigWig fold change over control ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF719ASG 864478934 ENCODE Processing Pipeline 6dcad8e976da3a8acaad9061736d449d https://www.encodeproject.org/files/ENCFF275YIZ/@@download/ENCFF275YIZ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF052MLC bed narrowPeak peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF719ASG 5164567 ENCODE Processing Pipeline 564e358518e174fd8563fa6c0eef389d https://www.encodeproject.org/files/ENCFF052MLC/@@download/ENCFF052MLC.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF824SMX bigBed narrowPeak peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF052MLC 11454151 ENCODE Processing Pipeline 609b531ce5fd4f508796cbf72f54d0e3 https://www.encodeproject.org/files/ENCFF824SMX/@@download/ENCFF824SMX.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF597JRR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF052MLC 267172 ENCODE Processing Pipeline 4fbb8144d469503075301fcc21bec0d5 https://www.encodeproject.org/files/ENCFF597JRR/@@download/ENCFF597JRR.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF739GQQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF597JRR 510139 ENCODE Processing Pipeline 76e2d100d2edb564cd95b66e3f1db960 https://www.encodeproject.org/files/ENCFF739GQQ/@@download/ENCFF739GQQ.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF354PLP bigWig signal p-value ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF210CWN 872667711 ENCODE Processing Pipeline 20885c65ec39e562aae79f2befde9675 https://www.encodeproject.org/files/ENCFF354PLP/@@download/ENCFF354PLP.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF149EWP bed narrowPeak peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF210CWN 5158845 ENCODE Processing Pipeline 88d804afc4b2947d76e97343b6046dda https://www.encodeproject.org/files/ENCFF149EWP/@@download/ENCFF149EWP.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF977MTB bigWig fold change over control ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF210CWN 846333595 ENCODE Processing Pipeline 0d2b9bb5a3b07813e82a68daf45168ae https://www.encodeproject.org/files/ENCFF977MTB/@@download/ENCFF977MTB.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF898CWY bam unfiltered alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF807MUK, ENCFF966WHJ 3731882234 ENCODE Processing Pipeline 4344b1a9c53ec71976247e17ac2e93b5 https://www.encodeproject.org/files/ENCFF898CWY/@@download/ENCFF898CWY.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF355IQD bam unfiltered alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF167KLS, ENCFF429BVY, ENCFF807MUK 1815667559 ENCODE Processing Pipeline bb31dee8254402915c85f1ba40648061 https://www.encodeproject.org/files/ENCFF355IQD/@@download/ENCFF355IQD.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF100ZAY bam unfiltered alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF167KLS, ENCFF429BVY, ENCFF643CGH 1825395935 ENCODE Processing Pipeline 1213d20864eed96a0665c4b460cf69b5 https://www.encodeproject.org/files/ENCFF100ZAY/@@download/ENCFF100ZAY.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF739CZU bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF167KLS, ENCFF429BVY, ENCFF807MUK 1117597375 ENCODE Processing Pipeline f11e7d9d70f48adc76120f23fb9c22cc https://www.encodeproject.org/files/ENCFF739CZU/@@download/ENCFF739CZU.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF510CLQ bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF167KLS, ENCFF429BVY, ENCFF643CGH 1117078329 ENCODE Processing Pipeline 57ddcb06dfd4666d2197f2c485345ac2 https://www.encodeproject.org/files/ENCFF510CLQ/@@download/ENCFF510CLQ.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF229DGU bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF643CGH, ENCFF966WHJ 2480532482 ENCODE Processing Pipeline 097cd76ae3ae654efa402930948372f2 https://www.encodeproject.org/files/ENCFF229DGU/@@download/ENCFF229DGU.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF199BMF bam unfiltered alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF643CGH, ENCFF966WHJ 3752886053 ENCODE Processing Pipeline 30acc9f96e51516bfb72100cae404142 https://www.encodeproject.org/files/ENCFF199BMF/@@download/ENCFF199BMF.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF097QGZ bigWig signal p-value ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF229DGU, ENCFF510CLQ, ENCFF607ZQL, ENCFF630PML 1390419643 ENCODE Processing Pipeline dd1de3b5a6bf5dcd793b64140d48ce86 https://www.encodeproject.org/files/ENCFF097QGZ/@@download/ENCFF097QGZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF988MDM bigBed narrowPeak conservative idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF429NNH 174222 ENCODE Processing Pipeline 6e2ceccf945edab680cc65e4a2b92026 https://www.encodeproject.org/files/ENCFF988MDM/@@download/ENCFF988MDM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF391MKB bigWig signal p-value ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF739CZU 1169737007 ENCODE Processing Pipeline b1f5f4d7283df8586a677c3af4b83d46 https://www.encodeproject.org/files/ENCFF391MKB/@@download/ENCFF391MKB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF862XUB bigWig fold change over control ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF739CZU 1036975198 ENCODE Processing Pipeline 48b0a9286dc3f8d07cbc96c0236b310c https://www.encodeproject.org/files/ENCFF862XUB/@@download/ENCFF862XUB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF853YEV bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX 7130030 ENCODE Processing Pipeline f42d062f5574d7c2034d46af3d87d5c2 https://www.encodeproject.org/files/ENCFF853YEV/@@download/ENCFF853YEV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF724ZSR bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF739CZU 6247130 ENCODE Processing Pipeline 6c74b521dba8fe462b798f1c39c88d80 https://www.encodeproject.org/files/ENCFF724ZSR/@@download/ENCFF724ZSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF887LHM bed narrowPeak optimal idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF582UCY, ENCFF724ZSR, ENCFF853YEV 72796 ENCODE Processing Pipeline 31cf866fcc209e6d4489baee92e9fcd2 https://www.encodeproject.org/files/ENCFF887LHM/@@download/ENCFF887LHM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF733VQW bigBed narrowPeak optimal idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF887LHM 228148 ENCODE Processing Pipeline 029e52cc2a9056bcb95447bbb982e42c https://www.encodeproject.org/files/ENCFF733VQW/@@download/ENCFF733VQW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF596XTE bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF510CLQ, ENCFF607ZQL, ENCFF630PML 6218976 ENCODE Processing Pipeline 7f05befcd35d02a5fe4a3785e8e7e564 https://www.encodeproject.org/files/ENCFF596XTE/@@download/ENCFF596XTE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF074NFE bigBed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF369YQE 13085007 ENCODE Processing Pipeline e486906fcff75bca25f63b351136dc47 https://www.encodeproject.org/files/ENCFF074NFE/@@download/ENCFF074NFE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF560BDQ bigWig signal p-value ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX 1330257912 ENCODE Processing Pipeline 2152e58d847cce7a73280207e917ec0d https://www.encodeproject.org/files/ENCFF560BDQ/@@download/ENCFF560BDQ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF351SUD bigWig fold change over control ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX 1525751702 ENCODE Processing Pipeline 486b5ea7e02c69d93b8970eb1d1b9494 https://www.encodeproject.org/files/ENCFF351SUD/@@download/ENCFF351SUD.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF511WAC bigWig signal p-value ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX, ENCFF739CZU 1767030647 ENCODE Processing Pipeline bf5e37a08705150e1cd11933989fd6c6 https://www.encodeproject.org/files/ENCFF511WAC/@@download/ENCFF511WAC.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF554HAG bigWig fold change over control ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX, ENCFF739CZU 1830894778 ENCODE Processing Pipeline d25d03c09ba8ef7ec2604d5657663030 https://www.encodeproject.org/files/ENCFF554HAG/@@download/ENCFF554HAG.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF582UCY bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX, ENCFF739CZU 7166046 ENCODE Processing Pipeline e639f37bb051826a32c891d4068b2254 https://www.encodeproject.org/files/ENCFF582UCY/@@download/ENCFF582UCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF050HFS bigBed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF853YEV 13142433 ENCODE Processing Pipeline 390be16bcdd9d3e41600faa58bdda902 https://www.encodeproject.org/files/ENCFF050HFS/@@download/ENCFF050HFS.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF590LXA bigBed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF724ZSR 13453542 ENCODE Processing Pipeline 5aca4a194257a55779d15eed48d041f2 https://www.encodeproject.org/files/ENCFF590LXA/@@download/ENCFF590LXA.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF227FQC bigBed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF582UCY 13069496 ENCODE Processing Pipeline 960186603c51eb9201ab68e09ef425e1 https://www.encodeproject.org/files/ENCFF227FQC/@@download/ENCFF227FQC.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF871VNP bed narrowPeak conservative idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF582UCY, ENCFF724ZSR, ENCFF853YEV 58744 ENCODE Processing Pipeline fc6aa4b59f5a4dd7edacb6a3d2181aac https://www.encodeproject.org/files/ENCFF871VNP/@@download/ENCFF871VNP.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF553GOE bigBed narrowPeak conservative idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF871VNP 173053 ENCODE Processing Pipeline d349c56f5fd87682383e2e4c3d6d976f https://www.encodeproject.org/files/ENCFF553GOE/@@download/ENCFF553GOE.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF369YQE bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF229DGU, ENCFF510CLQ, ENCFF607ZQL, ENCFF630PML 7166972 ENCODE Processing Pipeline 8cfbce38ddd7355727a217d1cb162dbf https://www.encodeproject.org/files/ENCFF369YQE/@@download/ENCFF369YQE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF774GPJ bigBed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF551TPD 13146253 ENCODE Processing Pipeline b6e46444c148e5fc6d50544eb5624dd5 https://www.encodeproject.org/files/ENCFF774GPJ/@@download/ENCFF774GPJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF914BHR bigBed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF596XTE 13467601 ENCODE Processing Pipeline 87aef837299bd5ace7508b660fcdd9e1 https://www.encodeproject.org/files/ENCFF914BHR/@@download/ENCFF914BHR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF429NNH bed narrowPeak conservative idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF369YQE, ENCFF419RSJ, ENCFF551TPD, ENCFF596XTE 59102 ENCODE Processing Pipeline ca38348248e495b23a2dd93b1c654e87 https://www.encodeproject.org/files/ENCFF429NNH/@@download/ENCFF429NNH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF387QBM bigWig signal p-value ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF510CLQ, ENCFF607ZQL, ENCFF630PML 1136529893 ENCODE Processing Pipeline 3cbd82076beddde5fd1a767031930baa https://www.encodeproject.org/files/ENCFF387QBM/@@download/ENCFF387QBM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF551TPD bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF229DGU, ENCFF607ZQL, ENCFF630PML 7132687 ENCODE Processing Pipeline e2f32786a9236490da89a9d43d9119e8 https://www.encodeproject.org/files/ENCFF551TPD/@@download/ENCFF551TPD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF264UTC bigWig signal p-value ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF229DGU, ENCFF607ZQL, ENCFF630PML 1528210892 ENCODE Processing Pipeline bdcc852a23255ff288ad08f46388368c https://www.encodeproject.org/files/ENCFF264UTC/@@download/ENCFF264UTC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF691TVH bigBed narrowPeak optimal idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF687VHB 230205 ENCODE Processing Pipeline 266bc647c9b3970878d438374fbcaf56 https://www.encodeproject.org/files/ENCFF691TVH/@@download/ENCFF691TVH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF051SEO bigWig fold change over control ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF229DGU, ENCFF607ZQL, ENCFF630PML 1583394019 ENCODE Processing Pipeline c18ac6244706e1ba45f12129423cd6ee https://www.encodeproject.org/files/ENCFF051SEO/@@download/ENCFF051SEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF919BHX bigWig fold change over control ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF510CLQ, ENCFF607ZQL, ENCFF630PML 1023293918 ENCODE Processing Pipeline 9a4211bc476104dc1868b9a5d3c79625 https://www.encodeproject.org/files/ENCFF919BHX/@@download/ENCFF919BHX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF395HFM bigWig fold change over control ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF229DGU, ENCFF510CLQ, ENCFF607ZQL, ENCFF630PML 1791859158 ENCODE Processing Pipeline 3a97e0d41098353f798d1a3049ac238d https://www.encodeproject.org/files/ENCFF395HFM/@@download/ENCFF395HFM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF687VHB bed narrowPeak optimal idr thresholded peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF369YQE, ENCFF419RSJ, ENCFF551TPD, ENCFF596XTE 73259 ENCODE Processing Pipeline f5e43dc0d21db279d40cfb505008c620 https://www.encodeproject.org/files/ENCFF687VHB/@@download/ENCFF687VHB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF966WHJ fastq reads ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 36 single-ended 2977993405 Bradley Bernstein, Broad b6b4243ef723bca543fda67d14f5a1cb https://www.encodeproject.org/files/ENCFF966WHJ/@@download/ENCFF966WHJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF349YSG/, /files/ENCFF775RGK/, /files/ENCFF829PCB/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF153HRH bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF807MUK, ENCFF966WHJ 2481249284 ENCODE Processing Pipeline aee93eb3b2a8f9e158e85745b04653fd https://www.encodeproject.org/files/ENCFF153HRH/@@download/ENCFF153HRH.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF167KLS fastq reads ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 36 single-ended 712285979 Bradley Bernstein, Broad 8c77fcd9e7792885d291a586da55d3e6 https://www.encodeproject.org/files/ENCFF167KLS/@@download/ENCFF167KLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF799XPQ/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF429BVY fastq reads ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 36 single-ended 714798973 Bradley Bernstein, Broad 5e35474c60d4a58a3dc0cd0d88efbe6b https://www.encodeproject.org/files/ENCFF429BVY/@@download/ENCFF429BVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF799XPQ/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF328YJN fastq reads ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 1 76 paired-ended 1 ENCFF006VGP 2626553309 Richard Myers, HAIB 3eba2cc8b7957c0c76587cb14eb6d26a https://www.encodeproject.org/files/ENCFF328YJN/@@download/ENCFF328YJN.fastq.gz Illumina HiSeq 2000 /files/ENCFF007ATE/ released antibody characterized with exemption experiment not submitted to GEO ENCFF006VGP fastq reads ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 1 76 paired-ended 2 ENCFF328YJN 2754857449 Richard Myers, HAIB 943ccc936b761b252ded0e34a3bc01bb https://www.encodeproject.org/files/ENCFF006VGP/@@download/ENCFF006VGP.fastq.gz Illumina HiSeq 2000 /files/ENCFF629EIQ/ released antibody characterized with exemption experiment not submitted to GEO ENCFF149VZU bam alignments ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 76 ENCFF006VGP, ENCFF328YJN, ENCFF807MUK 4717508116 ENCODE Processing Pipeline 69ba8650217d2aefe5431b569913ebf2 https://www.encodeproject.org/files/ENCFF149VZU/@@download/ENCFF149VZU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF714ZRF bam unfiltered alignments ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 76 ENCFF006VGP, ENCFF328YJN, ENCFF807MUK 6331352360 ENCODE Processing Pipeline f3b8f72d9387b3ffe6a85fc89e648c17 https://www.encodeproject.org/files/ENCFF714ZRF/@@download/ENCFF714ZRF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF268CPV bam unfiltered alignments ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 76 ENCFF006VGP, ENCFF328YJN, ENCFF643CGH 6357840955 ENCODE Processing Pipeline b7f48e22129869c64d6897d43e1e77b4 https://www.encodeproject.org/files/ENCFF268CPV/@@download/ENCFF268CPV.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF330KYG bam alignments ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 76 ENCFF006VGP, ENCFF328YJN, ENCFF643CGH 4722549765 ENCODE Processing Pipeline 5c858cfc4e2280f37745c20d56d2c69b https://www.encodeproject.org/files/ENCFF330KYG/@@download/ENCFF330KYG.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF815RVR bigBed narrowPeak peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF399OOG 13396564 ENCODE Processing Pipeline 29897ffc9da2618a37fa26c768e054b4 https://www.encodeproject.org/files/ENCFF815RVR/@@download/ENCFF815RVR.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF010PQF bigWig signal p-value ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF330KYG, ENCFF943XRD 1666217952 ENCODE Processing Pipeline 827f9a011860fae5a2d42f541b0ac0dd https://www.encodeproject.org/files/ENCFF010PQF/@@download/ENCFF010PQF.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF534ZUJ bigWig fold change over control ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF330KYG, ENCFF943XRD 1534251346 ENCODE Processing Pipeline e0c9245453029f149ccdc4d44198820f https://www.encodeproject.org/files/ENCFF534ZUJ/@@download/ENCFF534ZUJ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF473KUA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF399OOG, ENCFF419RSJ 549912 ENCODE Processing Pipeline 42f853c4bc56b1454488f673b23c1572 https://www.encodeproject.org/files/ENCFF473KUA/@@download/ENCFF473KUA.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF399OOG bed narrowPeak peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF330KYG, ENCFF943XRD 7129377 ENCODE Processing Pipeline ae484e0b07035ae311e0fcac4b08ea74 https://www.encodeproject.org/files/ENCFF399OOG/@@download/ENCFF399OOG.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF060KVH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF473KUA 1094903 ENCODE Processing Pipeline bb5b2f0bd89d1b8c5c5bf1155098212e https://www.encodeproject.org/files/ENCFF060KVH/@@download/ENCFF060KVH.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF571VWB bigWig signal p-value ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF149VZU, ENCFF437XIH 1638537051 ENCODE Processing Pipeline e7d2f6b9ea9bf10e41b28b173aa8a6a6 https://www.encodeproject.org/files/ENCFF571VWB/@@download/ENCFF571VWB.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF986GSI bigWig fold change over control ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF149VZU, ENCFF437XIH 1511473785 ENCODE Processing Pipeline df3befb9639c47b4a05d072376a9cd1a https://www.encodeproject.org/files/ENCFF986GSI/@@download/ENCFF986GSI.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF285ODQ bed narrowPeak peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF149VZU, ENCFF437XIH 7110981 ENCODE Processing Pipeline 96495d5e4402340ae4ae01a383537ee0 https://www.encodeproject.org/files/ENCFF285ODQ/@@download/ENCFF285ODQ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF673JFD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF050TAS 1080944 ENCODE Processing Pipeline 91f4423d051e496226c3bbcb916f390f https://www.encodeproject.org/files/ENCFF673JFD/@@download/ENCFF673JFD.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF773TKK bigBed narrowPeak peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF285ODQ 13369927 ENCODE Processing Pipeline 15423a88f766ebce6e071de24ea7d26a https://www.encodeproject.org/files/ENCFF773TKK/@@download/ENCFF773TKK.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF050TAS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF001TDO, ENCFF285ODQ 539676 ENCODE Processing Pipeline f8063e38499782bc7b4fa74323e19edf https://www.encodeproject.org/files/ENCFF050TAS/@@download/ENCFF050TAS.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF481DYO bam unfiltered alignments ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014DFT, ENCFF699OSQ, ENCFF807MUK 6700709996 ENCODE Processing Pipeline b1f56234704a781fe8b9c8787bd0d5f4 https://www.encodeproject.org/files/ENCFF481DYO/@@download/ENCFF481DYO.bam hg19 released control low read depth, antibody characterized with exemption ENCFF014DFT fastq reads ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF699OSQ 2996992883 Michael Snyder, Stanford 836f53a6cfdb300df68a23b58aefc1c8 SRA:SRR6213380 https://www.encodeproject.org/files/ENCFF014DFT/@@download/ENCFF014DFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF453CTT/ released control low read depth, antibody characterized with exemption ENCFF699OSQ fastq reads ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF014DFT 3054190202 Michael Snyder, Stanford 72fab68ed2ee91218578c6789c72621b SRA:SRR6213380 https://www.encodeproject.org/files/ENCFF699OSQ/@@download/ENCFF699OSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF857OPQ/ released control low read depth, antibody characterized with exemption ENCFF875VJU bam alignments ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF014DFT, ENCFF699OSQ, ENCFF807MUK 5670621423 ENCODE Processing Pipeline d19ad595968be35084f2becaca18bafd https://www.encodeproject.org/files/ENCFF875VJU/@@download/ENCFF875VJU.bam hg19 released control low read depth, antibody characterized with exemption ENCFF112ZQC bam unfiltered alignments ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014DFT, ENCFF643CGH, ENCFF699OSQ 6712847406 ENCODE Processing Pipeline 405b0b85cfce36268d2c61d0593e02fd https://www.encodeproject.org/files/ENCFF112ZQC/@@download/ENCFF112ZQC.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF809HJM bam alignments ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014DFT, ENCFF643CGH, ENCFF699OSQ 5683005283 ENCODE Processing Pipeline c326ecd9ab6b32ddd303bf5595a44953 https://www.encodeproject.org/files/ENCFF809HJM/@@download/ENCFF809HJM.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF663LUW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF168HOV 63219 ENCODE Processing Pipeline 0b49ab130f7190cad60c043a43349c71 https://www.encodeproject.org/files/ENCFF663LUW/@@download/ENCFF663LUW.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF025LEV bigWig signal p-value ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF875VJU, ENCFF880RWA 739516720 ENCODE Processing Pipeline 783c4234c79721e5355e40de095fb30a https://www.encodeproject.org/files/ENCFF025LEV/@@download/ENCFF025LEV.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF796PXK bigBed narrowPeak peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF124PUR 11361353 ENCODE Processing Pipeline 7b6628b77842bea209293eda2a274618 https://www.encodeproject.org/files/ENCFF796PXK/@@download/ENCFF796PXK.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF124PUR bed narrowPeak peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF875VJU, ENCFF880RWA 5314711 ENCODE Processing Pipeline a45c18632d08ae3df4ab9ce70d263959 https://www.encodeproject.org/files/ENCFF124PUR/@@download/ENCFF124PUR.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF168HOV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF124PUR 12431 ENCODE Processing Pipeline 365229ac0a85bc44f35d2ac54d56b3dc https://www.encodeproject.org/files/ENCFF168HOV/@@download/ENCFF168HOV.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF158TWJ bigWig fold change over control ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF875VJU, ENCFF880RWA 1069381497 ENCODE Processing Pipeline 270d2739774acc3efd9f88a806262d3b https://www.encodeproject.org/files/ENCFF158TWJ/@@download/ENCFF158TWJ.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF664BBE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF280GHS 80302 ENCODE Processing Pipeline e9daadfc8a92e7505c54bdecef07e047 https://www.encodeproject.org/files/ENCFF664BBE/@@download/ENCFF664BBE.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF409VJA bigWig signal p-value ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF709NCT, ENCFF809HJM 741149433 ENCODE Processing Pipeline 6c1629fbc300a8ec4988240ed7dbf34c https://www.encodeproject.org/files/ENCFF409VJA/@@download/ENCFF409VJA.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF195WDA bed narrowPeak peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF709NCT, ENCFF809HJM 5315026 ENCODE Processing Pipeline 30e83f4942f33061a5b2b8f00bd9fd7d https://www.encodeproject.org/files/ENCFF195WDA/@@download/ENCFF195WDA.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF105BII bigBed narrowPeak peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF195WDA 11385071 ENCODE Processing Pipeline 7244bbbe71caf714b709acb383738b0e https://www.encodeproject.org/files/ENCFF105BII/@@download/ENCFF105BII.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF280GHS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF195WDA, ENCFF419RSJ 14896 ENCODE Processing Pipeline 74b3e314e91c118b62be497b50ef03b1 https://www.encodeproject.org/files/ENCFF280GHS/@@download/ENCFF280GHS.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF072IOC bigWig fold change over control ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF709NCT, ENCFF809HJM 1074492121 ENCODE Processing Pipeline 342dae7cd20141456d703db5eb28dab3 https://www.encodeproject.org/files/ENCFF072IOC/@@download/ENCFF072IOC.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF511MHY bam unfiltered alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 100 ENCFF807MUK, ENCFF854CCC, ENCFF881JDL 4108588207 ENCODE Processing Pipeline 1ec7214e95b46af78cc1f0babad20cb9 https://www.encodeproject.org/files/ENCFF511MHY/@@download/ENCFF511MHY.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF757THT bam unfiltered alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 100 ENCFF321LCC, ENCFF581MDG, ENCFF807MUK 7027502175 ENCODE Processing Pipeline dd2238428a2c5daa8187f157e1615852 https://www.encodeproject.org/files/ENCFF757THT/@@download/ENCFF757THT.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF581MDG fastq reads ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF321LCC 3327339438 Michael Snyder, Stanford 638ef9ba519933b7f6f7fd46e3f93c64 SRA:SRR5111059 https://www.encodeproject.org/files/ENCFF581MDG/@@download/ENCFF581MDG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF321LCC fastq reads ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF581MDG 3239576574 Michael Snyder, Stanford cb6fa618467e164e83e97fe730c25828 SRA:SRR5111059 https://www.encodeproject.org/files/ENCFF321LCC/@@download/ENCFF321LCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF881JDL fastq reads ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF854CCC 1906331476 Michael Snyder, Stanford aa7bbc22999c06d3a742c28243b8bcfb SRA:SRR5111060 https://www.encodeproject.org/files/ENCFF881JDL/@@download/ENCFF881JDL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF854CCC fastq reads ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF881JDL 1883208033 Michael Snyder, Stanford c9f578993971016450788080bfb1619d SRA:SRR5111060 https://www.encodeproject.org/files/ENCFF854CCC/@@download/ENCFF854CCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF948RVR bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 100 ENCFF807MUK, ENCFF854CCC, ENCFF881JDL 3347954121 ENCODE Processing Pipeline c29a4800762a56eef472b279e60eb76c https://www.encodeproject.org/files/ENCFF948RVR/@@download/ENCFF948RVR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF262STC bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 100 ENCFF321LCC, ENCFF581MDG, ENCFF807MUK 5486195713 ENCODE Processing Pipeline edd5c50c63d9de67f51e5136bf804ce0 https://www.encodeproject.org/files/ENCFF262STC/@@download/ENCFF262STC.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF211FEP bigWig signal p-value ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF948RVR 1123137016 ENCODE Processing Pipeline 6d66adb07e4a654241009fbceb1b3d4a https://www.encodeproject.org/files/ENCFF211FEP/@@download/ENCFF211FEP.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF385DNN bigWig signal p-value ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF262STC 1235038724 ENCODE Processing Pipeline adb88a6de7a0d8ae27671f5f0a602d43 https://www.encodeproject.org/files/ENCFF385DNN/@@download/ENCFF385DNN.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF345EIT bigWig signal p-value ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF262STC, ENCFF581ZJL, ENCFF948RVR 1786484803 ENCODE Processing Pipeline dbf7d6177361021ef5cbaf5f1a6b8df3 https://www.encodeproject.org/files/ENCFF345EIT/@@download/ENCFF345EIT.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF354SEI bigWig fold change over control ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF948RVR 1065261839 ENCODE Processing Pipeline 7539c35c896694fd7249f90e7fc96a7e https://www.encodeproject.org/files/ENCFF354SEI/@@download/ENCFF354SEI.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF516WDU bigWig fold change over control ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF262STC 1286327012 ENCODE Processing Pipeline e114a5a46fb466aaa59655ff295e19db https://www.encodeproject.org/files/ENCFF516WDU/@@download/ENCFF516WDU.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF676AOK bigWig fold change over control ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF262STC, ENCFF581ZJL, ENCFF948RVR 2085623723 ENCODE Processing Pipeline 876b901f287ee77faa06645623e458b0 https://www.encodeproject.org/files/ENCFF676AOK/@@download/ENCFF676AOK.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF032UMZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF948RVR 6940315 ENCODE Processing Pipeline 7fe98b1db8a51da117e0bb6035488924 https://www.encodeproject.org/files/ENCFF032UMZ/@@download/ENCFF032UMZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF621PYJ bigBed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF021DHZ 13094065 ENCODE Processing Pipeline c19ae49d3c0a86c014a375232bc0e121 https://www.encodeproject.org/files/ENCFF621PYJ/@@download/ENCFF621PYJ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF266LAP bigBed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF032UMZ 13013237 ENCODE Processing Pipeline dff601cfe105bfac68f74995ce535352 https://www.encodeproject.org/files/ENCFF266LAP/@@download/ENCFF266LAP.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF650HMR bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF262STC, ENCFF581ZJL, ENCFF948RVR 7268761 ENCODE Processing Pipeline 95bafa47f2faeff7d2d871566b7a397f https://www.encodeproject.org/files/ENCFF650HMR/@@download/ENCFF650HMR.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF021DHZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF262STC 7016934 ENCODE Processing Pipeline 2b207983b554dccb298e6a982558fbca https://www.encodeproject.org/files/ENCFF021DHZ/@@download/ENCFF021DHZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF437RQT bigBed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF650HMR 12834794 ENCODE Processing Pipeline aed7c69ed89cd64ec457b082533d3828 https://www.encodeproject.org/files/ENCFF437RQT/@@download/ENCFF437RQT.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF732ZCF bam unfiltered alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF854CCC, ENCFF881JDL 4111759687 ENCODE Processing Pipeline 8f03eb9df7ea4f449e893773821bf5c1 https://www.encodeproject.org/files/ENCFF732ZCF/@@download/ENCFF732ZCF.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF397LNB bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF854CCC, ENCFF881JDL 3349420446 ENCODE Processing Pipeline 9fc8ef3a1c0043612a0c4a9c2edba69b https://www.encodeproject.org/files/ENCFF397LNB/@@download/ENCFF397LNB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF106JJJ bam unfiltered alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 100 ENCFF321LCC, ENCFF581MDG, ENCFF643CGH 7032936422 ENCODE Processing Pipeline 04f31424c6bedbb423bd6f79919f99a3 https://www.encodeproject.org/files/ENCFF106JJJ/@@download/ENCFF106JJJ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF700WSI bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 100 ENCFF321LCC, ENCFF581MDG, ENCFF643CGH 5489300678 ENCODE Processing Pipeline 3a013ccf59abd959b6eec94e204bdddd https://www.encodeproject.org/files/ENCFF700WSI/@@download/ENCFF700WSI.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF150WKJ bigWig signal p-value ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF397LNB, ENCFF910IKB 1123841442 ENCODE Processing Pipeline 784d98a493fa986c94dc5457a37b2b76 https://www.encodeproject.org/files/ENCFF150WKJ/@@download/ENCFF150WKJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF467QSK bigWig signal p-value ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF700WSI 1002282786 ENCODE Processing Pipeline 00bf8398c47ea71922ea9b98a59b242c https://www.encodeproject.org/files/ENCFF467QSK/@@download/ENCFF467QSK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF043TNW bigWig signal p-value ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF397LNB, ENCFF700WSI, ENCFF910IKB 1889640962 ENCODE Processing Pipeline 203f4d9afcb3d8e45ea62fe1c5fd4a8a https://www.encodeproject.org/files/ENCFF043TNW/@@download/ENCFF043TNW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF782XIT bigWig fold change over control ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF397LNB, ENCFF910IKB 1064417312 ENCODE Processing Pipeline 07a88f0d4a2788f2519ada609de55691 https://www.encodeproject.org/files/ENCFF782XIT/@@download/ENCFF782XIT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF473IIF bigWig fold change over control ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF700WSI 1279555549 ENCODE Processing Pipeline 6704cab8ca6241a7db812dbf2db38a4d https://www.encodeproject.org/files/ENCFF473IIF/@@download/ENCFF473IIF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF065RHP bigWig fold change over control ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF397LNB, ENCFF700WSI, ENCFF910IKB 2084585240 ENCODE Processing Pipeline a189e0da007cba75e436f94701f09f94 https://www.encodeproject.org/files/ENCFF065RHP/@@download/ENCFF065RHP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF650QRE bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF397LNB, ENCFF910IKB 6801433 ENCODE Processing Pipeline 6daffeac26caf78eb938152fe8dbb664 https://www.encodeproject.org/files/ENCFF650QRE/@@download/ENCFF650QRE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF219QEL bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF700WSI 6931066 ENCODE Processing Pipeline d6e0e882359ceacc4f0c99523f8fff66 https://www.encodeproject.org/files/ENCFF219QEL/@@download/ENCFF219QEL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF676XEI bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF397LNB, ENCFF700WSI, ENCFF910IKB 7247901 ENCODE Processing Pipeline 12997715425bce34a2f104788cd94e9f https://www.encodeproject.org/files/ENCFF676XEI/@@download/ENCFF676XEI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF633CVT bigBed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF650QRE 12964783 ENCODE Processing Pipeline 09835f4263a9acf7a10438aa2b207e47 https://www.encodeproject.org/files/ENCFF633CVT/@@download/ENCFF633CVT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF355RBE bigBed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF219QEL 13090586 ENCODE Processing Pipeline d58b2edfe1d293b52f92ac7d2af225b7 https://www.encodeproject.org/files/ENCFF355RBE/@@download/ENCFF355RBE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF301ASL bigBed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF676XEI 12824647 ENCODE Processing Pipeline 5f86a1c59c0353e6e66f8ac32bf09a89 https://www.encodeproject.org/files/ENCFF301ASL/@@download/ENCFF301ASL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF023PLP bed narrowPeak conservative idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF219QEL, ENCFF419RSJ, ENCFF650QRE, ENCFF676XEI 258032 ENCODE Processing Pipeline 8024a88a7c27ba193731001e1ab55caa https://www.encodeproject.org/files/ENCFF023PLP/@@download/ENCFF023PLP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF462FUG bigBed narrowPeak conservative idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023PLP 554918 ENCODE Processing Pipeline 98c422823cbe9033aed2d883c5b6c757 https://www.encodeproject.org/files/ENCFF462FUG/@@download/ENCFF462FUG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF728KKP bed narrowPeak optimal idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF219QEL, ENCFF419RSJ, ENCFF650QRE, ENCFF676XEI 383162 ENCODE Processing Pipeline 8dd1f3b760d18bb50be1a56c01c5bcf3 https://www.encodeproject.org/files/ENCFF728KKP/@@download/ENCFF728KKP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF062UXM bigBed narrowPeak optimal idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF728KKP 749565 ENCODE Processing Pipeline 078d1d5c7cde1376bc6c98be1861ce8d https://www.encodeproject.org/files/ENCFF062UXM/@@download/ENCFF062UXM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF981VUX bed narrowPeak conservative idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF021DHZ, ENCFF032UMZ, ENCFF650HMR 211292 ENCODE Processing Pipeline eb96ca3f7828b9ca78b44ddbe4345336 https://www.encodeproject.org/files/ENCFF981VUX/@@download/ENCFF981VUX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF671VCR bigBed narrowPeak conservative idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF981VUX 399000 ENCODE Processing Pipeline 96f18485b13878177db6af890b93ec45 https://www.encodeproject.org/files/ENCFF671VCR/@@download/ENCFF671VCR.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF074EZL bed narrowPeak optimal idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF021DHZ, ENCFF032UMZ, ENCFF650HMR 321865 ENCODE Processing Pipeline 7e52fb41f5a8121abd5a3b5a07f42747 https://www.encodeproject.org/files/ENCFF074EZL/@@download/ENCFF074EZL.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF546HOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF074EZL 662278 ENCODE Processing Pipeline 322d9f882e5e24b94394d0f9b52156f3 https://www.encodeproject.org/files/ENCFF546HOZ/@@download/ENCFF546HOZ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF435JEO fastq reads ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 1 100 paired-ended 2 ENCFF443EYG 3454650200 Michael Snyder, Stanford fd09d4d2f1a10a4ed3d8eb2bc1fff7f3 SRA:SRR5112257 https://www.encodeproject.org/files/ENCFF435JEO/@@download/ENCFF435JEO.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity ENCFF443EYG fastq reads ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 1 100 paired-ended 1 ENCFF435JEO 2960929664 Michael Snyder, Stanford c29ff6d3fa71580ffd70a5b236dab0d2 SRA:SRR5112257 https://www.encodeproject.org/files/ENCFF443EYG/@@download/ENCFF443EYG.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity ENCFF224PWB fastq reads ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 1 ENCFF337XLT 4192369883 Michael Snyder, Stanford 3f336d5c02c9e130280c99b0d523245a SRA:SRR5112256 https://www.encodeproject.org/files/ENCFF224PWB/@@download/ENCFF224PWB.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity ENCFF337XLT fastq reads ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 2 ENCFF224PWB 4446265502 Michael Snyder, Stanford 8a059b4d0c98e9551552660303531592 SRA:SRR5112256 https://www.encodeproject.org/files/ENCFF337XLT/@@download/ENCFF337XLT.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity ENCFF969PXB bam unfiltered alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF435JEO, ENCFF443EYG, ENCFF807MUK 5877460934 ENCODE Processing Pipeline 57c0d5a376cb98240e7f19d216aeebad https://www.encodeproject.org/files/ENCFF969PXB/@@download/ENCFF969PXB.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF420TEY bam unfiltered alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF435JEO, ENCFF443EYG, ENCFF643CGH 5882036204 ENCODE Processing Pipeline 218a89fdce252c7d29ed68e6bc93b1c4 https://www.encodeproject.org/files/ENCFF420TEY/@@download/ENCFF420TEY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF484LPC bam unfiltered alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF224PWB, ENCFF337XLT, ENCFF643CGH 7839421889 ENCODE Processing Pipeline 465a17797ec79c2a13ddd60014978a48 https://www.encodeproject.org/files/ENCFF484LPC/@@download/ENCFF484LPC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF814RYW bam unfiltered alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF224PWB, ENCFF337XLT, ENCFF807MUK 7834623290 ENCODE Processing Pipeline a638e7ee9868528851dd1c007842f818 https://www.encodeproject.org/files/ENCFF814RYW/@@download/ENCFF814RYW.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF282YII bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF435JEO, ENCFF443EYG, ENCFF807MUK 4201418841 ENCODE Processing Pipeline 883d7e84e2f28e672ab10721ab0982a7 https://www.encodeproject.org/files/ENCFF282YII/@@download/ENCFF282YII.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF420DGT bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF435JEO, ENCFF443EYG, ENCFF643CGH 4205404276 ENCODE Processing Pipeline b0207a286b8ff143359bd0446664dbba https://www.encodeproject.org/files/ENCFF420DGT/@@download/ENCFF420DGT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF682WTZ bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF224PWB, ENCFF337XLT, ENCFF807MUK 5990476621 ENCODE Processing Pipeline cd7dd1edddeef1422429114acd57f5c5 https://www.encodeproject.org/files/ENCFF682WTZ/@@download/ENCFF682WTZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF129RYE bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF224PWB, ENCFF337XLT, ENCFF643CGH 5996078376 ENCODE Processing Pipeline 680900c76caebd025ca8223851016d7b https://www.encodeproject.org/files/ENCFF129RYE/@@download/ENCFF129RYE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF862IGV bigWig signal p-value ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF282YII, ENCFF834TUP 1296801281 ENCODE Processing Pipeline 68a83728ad74ccb7afd9c57534c030be https://www.encodeproject.org/files/ENCFF862IGV/@@download/ENCFF862IGV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF833UPN bigWig fold change over control ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF129RYE, ENCFF420DGT, ENCFF712WXB, ENCFF790TAN 2620156675 ENCODE Processing Pipeline 800117539992c8b8bc8c2460fdb75ae6 https://www.encodeproject.org/files/ENCFF833UPN/@@download/ENCFF833UPN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF292YLV bigWig fold change over control ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF282YII, ENCFF682WTZ, ENCFF834TUP 2617519106 ENCODE Processing Pipeline cae91f22ac1f38f2ae4f508af9d4efc8 https://www.encodeproject.org/files/ENCFF292YLV/@@download/ENCFF292YLV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF098MNE bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF129RYE, ENCFF712WXB, ENCFF790TAN 7190812 ENCODE Processing Pipeline d7935bb743438cfa2f82636a34b7b201 https://www.encodeproject.org/files/ENCFF098MNE/@@download/ENCFF098MNE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF756UDD bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF420DGT, ENCFF712WXB 6854310 ENCODE Processing Pipeline d1c6eeddfc90e75e760a0d31d26753f6 https://www.encodeproject.org/files/ENCFF756UDD/@@download/ENCFF756UDD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF825GRZ bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF129RYE, ENCFF420DGT, ENCFF712WXB, ENCFF790TAN 7271805 ENCODE Processing Pipeline 52bd0192a1c344c4a3afe1e4f450be33 https://www.encodeproject.org/files/ENCFF825GRZ/@@download/ENCFF825GRZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF584ZGO bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF282YII, ENCFF682WTZ, ENCFF834TUP 7248295 ENCODE Processing Pipeline a1ed7479c644b147a2bb7e692edf573f https://www.encodeproject.org/files/ENCFF584ZGO/@@download/ENCFF584ZGO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF724VJM bigBed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF825GRZ 13355817 ENCODE Processing Pipeline 41708bfc00993c3cc0e04772d7c90d94 https://www.encodeproject.org/files/ENCFF724VJM/@@download/ENCFF724VJM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF444WWM bigBed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF584ZGO 13317241 ENCODE Processing Pipeline 37f39a5f8ac78f8d1284088ad3670db5 https://www.encodeproject.org/files/ENCFF444WWM/@@download/ENCFF444WWM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF938VXE bigBed narrowPeak conservative idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF691VAI 950162 ENCODE Processing Pipeline 2703bce0925c2935902d05f707626a8f https://www.encodeproject.org/files/ENCFF938VXE/@@download/ENCFF938VXE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF956WTY bigWig signal p-value ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF129RYE, ENCFF712WXB, ENCFF790TAN 1665576913 ENCODE Processing Pipeline 01157ea113b9c1d089b896d84fd5089e https://www.encodeproject.org/files/ENCFF956WTY/@@download/ENCFF956WTY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF110GZR bigWig signal p-value ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF682WTZ, ENCFF834TUP 1952695239 ENCODE Processing Pipeline 45ed4cc4eb3593279e95a3abd1085377 https://www.encodeproject.org/files/ENCFF110GZR/@@download/ENCFF110GZR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF753RMA bigWig signal p-value ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF420DGT, ENCFF712WXB 1317308627 ENCODE Processing Pipeline f113636cd6ff3228118a3b0947f3e20d https://www.encodeproject.org/files/ENCFF753RMA/@@download/ENCFF753RMA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF177ILO bigWig signal p-value ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF129RYE, ENCFF420DGT, ENCFF712WXB, ENCFF790TAN 2440490640 ENCODE Processing Pipeline d290920cb45d6ac517b3b4f7afad86da https://www.encodeproject.org/files/ENCFF177ILO/@@download/ENCFF177ILO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF775LPV bigWig signal p-value ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF282YII, ENCFF682WTZ, ENCFF834TUP 2437281953 ENCODE Processing Pipeline 4f36652fef197516ee14d14e1c199167 https://www.encodeproject.org/files/ENCFF775LPV/@@download/ENCFF775LPV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF261GZW bigWig fold change over control ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF282YII, ENCFF834TUP 1447799053 ENCODE Processing Pipeline b665188e551a075bd82667a51caa458c https://www.encodeproject.org/files/ENCFF261GZW/@@download/ENCFF261GZW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF705RWC bigBed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF098MNE 13363623 ENCODE Processing Pipeline 3d7febda1acea22229927a5ace619a4b https://www.encodeproject.org/files/ENCFF705RWC/@@download/ENCFF705RWC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF620EUP bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF682WTZ, ENCFF834TUP 7172221 ENCODE Processing Pipeline 1dfaa7944b26740a476409b2fbc05319 https://www.encodeproject.org/files/ENCFF620EUP/@@download/ENCFF620EUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF675VGK bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF282YII, ENCFF834TUP 6846730 ENCODE Processing Pipeline 8d55e7ff85dcc1b6539585c43df576c4 https://www.encodeproject.org/files/ENCFF675VGK/@@download/ENCFF675VGK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF766MKD bigBed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF620EUP 13336290 ENCODE Processing Pipeline 0b6fbc807a9d41a6b2c99288e8be20f0 https://www.encodeproject.org/files/ENCFF766MKD/@@download/ENCFF766MKD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF353PHY bigWig fold change over control ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF682WTZ, ENCFF834TUP 2134604671 ENCODE Processing Pipeline 094828a306abe6cfaace16fc80efdb43 https://www.encodeproject.org/files/ENCFF353PHY/@@download/ENCFF353PHY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF124FDK bigWig fold change over control ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF420DGT, ENCFF712WXB 1435582424 ENCODE Processing Pipeline 39a9a53ce41353b69d2b29a7c34b5687 https://www.encodeproject.org/files/ENCFF124FDK/@@download/ENCFF124FDK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF097WRP bigBed narrowPeak conservative idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF577EBU 962909 ENCODE Processing Pipeline 5599d888f70279efc6032b7b9279df11 https://www.encodeproject.org/files/ENCFF097WRP/@@download/ENCFF097WRP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF812UVT bigBed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF675VGK 13401661 ENCODE Processing Pipeline efe9e81de2176c349e1b8b104a7d0b1d https://www.encodeproject.org/files/ENCFF812UVT/@@download/ENCFF812UVT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF691VAI bed narrowPeak conservative idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF584ZGO, ENCFF620EUP, ENCFF675VGK 443702 ENCODE Processing Pipeline fa839911c6cf87bab1251c987b0f18bc https://www.encodeproject.org/files/ENCFF691VAI/@@download/ENCFF691VAI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF679NLX bigBed narrowPeak optimal idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF165BCW 1000551 ENCODE Processing Pipeline a3c53a8de7adb5c582a5c05ef0ec485e https://www.encodeproject.org/files/ENCFF679NLX/@@download/ENCFF679NLX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF785EFH bigWig fold change over control ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF129RYE, ENCFF712WXB, ENCFF790TAN 2135747882 ENCODE Processing Pipeline b7d91d563b34e6d61d056dcd96294843 https://www.encodeproject.org/files/ENCFF785EFH/@@download/ENCFF785EFH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF554XVP bigBed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF756UDD 13418694 ENCODE Processing Pipeline a7709bdad22cb4012d648e8b16c4717b https://www.encodeproject.org/files/ENCFF554XVP/@@download/ENCFF554XVP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF577EBU bed narrowPeak conservative idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF098MNE, ENCFF419RSJ, ENCFF756UDD, ENCFF825GRZ 450611 ENCODE Processing Pipeline cfbbfda01870acd751cd4025a009b254 https://www.encodeproject.org/files/ENCFF577EBU/@@download/ENCFF577EBU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF165BCW bed narrowPeak optimal idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF584ZGO, ENCFF620EUP, ENCFF675VGK 472483 ENCODE Processing Pipeline 400dadc1bad41dafe27291e51353005f https://www.encodeproject.org/files/ENCFF165BCW/@@download/ENCFF165BCW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF856HUK bed narrowPeak optimal idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF098MNE, ENCFF419RSJ, ENCFF756UDD, ENCFF825GRZ 479826 ENCODE Processing Pipeline 3fce17d32adedb8d11def5e87ff3d0fe https://www.encodeproject.org/files/ENCFF856HUK/@@download/ENCFF856HUK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF493SVP bigBed narrowPeak optimal idr thresholded peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF856HUK 1013466 ENCODE Processing Pipeline 6bec9369b1293e8710c31f4a682a19d1 https://www.encodeproject.org/files/ENCFF493SVP/@@download/ENCFF493SVP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF956SSU fastq reads ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 1 76 paired-ended 1 ENCFF919EOD 1851365619 Bradley Bernstein, Broad e7ded1d01e01c7f3c69fcc2ef0df462d SRA:SRR5833078 https://www.encodeproject.org/files/ENCFF956SSU/@@download/ENCFF956SSU.fastq.gz Illumina HiSeq 2500 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF300LJR/, /files/ENCFF869EIB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF919EOD fastq reads ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 1 76 paired-ended 2 ENCFF956SSU 1859576504 Bradley Bernstein, Broad 9400d4e575313e7b47b89a503e39991f SRA:SRR5833078 https://www.encodeproject.org/files/ENCFF919EOD/@@download/ENCFF919EOD.fastq.gz Illumina HiSeq 2500 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF300LJR/, /files/ENCFF869EIB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF103FNH fastq reads ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 1 76 paired-ended 1 ENCFF383JIP 2001021226 Bradley Bernstein, Broad 330ffc0eda681d45fbb87047ce3f0138 SRA:SRR5833079 https://www.encodeproject.org/files/ENCFF103FNH/@@download/ENCFF103FNH.fastq.gz Illumina HiSeq 2500 /files/ENCFF116RUN/, /files/ENCFF470CVX/, /files/ENCFF546EIX/, /files/ENCFF641CIT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF383JIP fastq reads ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 1 76 paired-ended 2 ENCFF103FNH 2076187649 Bradley Bernstein, Broad 572f32bf2cf8400bf5ad23299d45d8fa SRA:SRR5833079 https://www.encodeproject.org/files/ENCFF383JIP/@@download/ENCFF383JIP.fastq.gz Illumina HiSeq 2500 /files/ENCFF116RUN/, /files/ENCFF470CVX/, /files/ENCFF546EIX/, /files/ENCFF641CIT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF773PZJ bam unfiltered alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 76 ENCFF103FNH, ENCFF383JIP, ENCFF643CGH 4932955607 ENCODE Processing Pipeline 4dcfc23c12f2773483c2c11d8fa89314 https://www.encodeproject.org/files/ENCFF773PZJ/@@download/ENCFF773PZJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF552PEL bam unfiltered alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 76 ENCFF807MUK, ENCFF919EOD, ENCFF956SSU 4527079033 ENCODE Processing Pipeline 3f6ce583e545e4a28cad6e7be8703b18 https://www.encodeproject.org/files/ENCFF552PEL/@@download/ENCFF552PEL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF274DDB bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 76 ENCFF643CGH, ENCFF919EOD, ENCFF956SSU 3693595739 ENCODE Processing Pipeline c59076fd8f12a21201f2707aa2311625 https://www.encodeproject.org/files/ENCFF274DDB/@@download/ENCFF274DDB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF935JGC bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 76 ENCFF103FNH, ENCFF383JIP, ENCFF807MUK 3650904638 ENCODE Processing Pipeline 48ea03c31a03d177977823303f650199 https://www.encodeproject.org/files/ENCFF935JGC/@@download/ENCFF935JGC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF006GXQ bam unfiltered alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 76 ENCFF643CGH, ENCFF919EOD, ENCFF956SSU 4542016402 ENCODE Processing Pipeline 1c8683892e056ac8257988e036d43548 https://www.encodeproject.org/files/ENCFF006GXQ/@@download/ENCFF006GXQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF954MFY bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 76 ENCFF103FNH, ENCFF383JIP, ENCFF643CGH 3649215100 ENCODE Processing Pipeline 24c24465abbd41e1058c983615a585a7 https://www.encodeproject.org/files/ENCFF954MFY/@@download/ENCFF954MFY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF692UAE bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 76 ENCFF807MUK, ENCFF919EOD, ENCFF956SSU 3696732385 ENCODE Processing Pipeline 03b5fa899b834a7d53cb8286c284b06d https://www.encodeproject.org/files/ENCFF692UAE/@@download/ENCFF692UAE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF752EJO bam unfiltered alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 76 ENCFF103FNH, ENCFF383JIP, ENCFF807MUK 4919858600 ENCODE Processing Pipeline d0a4f84d3012ca79997b7eb858d0b2a4 https://www.encodeproject.org/files/ENCFF752EJO/@@download/ENCFF752EJO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF186VVK bigWig signal p-value ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE 2323167175 ENCODE Processing Pipeline a1f5904d481e5b06a665ce3ad8d62e79 https://www.encodeproject.org/files/ENCFF186VVK/@@download/ENCFF186VVK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF929SED bigWig signal p-value ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF274DDB, ENCFF687LIL, ENCFF956GLJ 2362729257 ENCODE Processing Pipeline de4509661449d8675a23675a0b42aeb3 https://www.encodeproject.org/files/ENCFF929SED/@@download/ENCFF929SED.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF822TXZ bigWig signal p-value ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF274DDB, ENCFF687LIL, ENCFF954MFY, ENCFF956GLJ 2318808458 ENCODE Processing Pipeline 40d94dc7b13cdd209e41ab6478d0bd73 https://www.encodeproject.org/files/ENCFF822TXZ/@@download/ENCFF822TXZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF065ZZR bigWig fold change over control ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE 2113560841 ENCODE Processing Pipeline 764cad2ab15d7e60201a636a3f9bdb3f https://www.encodeproject.org/files/ENCFF065ZZR/@@download/ENCFF065ZZR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF398LTN bigWig signal p-value ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE, ENCFF935JGC 2485872234 ENCODE Processing Pipeline 025cba35a3906ecaedab366e8cf28dc9 https://www.encodeproject.org/files/ENCFF398LTN/@@download/ENCFF398LTN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF617YLE bigWig signal p-value ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF687LIL, ENCFF954MFY, ENCFF956GLJ 2238099047 ENCODE Processing Pipeline 7d8db4cbf87234a55122eeffacf33d8e https://www.encodeproject.org/files/ENCFF617YLE/@@download/ENCFF617YLE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF351ETF bigWig signal p-value ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF093OXI, ENCFF571VVW, ENCFF935JGC 2205214447 ENCODE Processing Pipeline d69ea7f668fc0dd0d2e5b0ae2b793edb https://www.encodeproject.org/files/ENCFF351ETF/@@download/ENCFF351ETF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF708BRE bigWig fold change over control ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE, ENCFF935JGC 2736349074 ENCODE Processing Pipeline 40dc31403fa0724df8fb78093c6dd595 https://www.encodeproject.org/files/ENCFF708BRE/@@download/ENCFF708BRE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF767NVH bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF274DDB, ENCFF687LIL, ENCFF954MFY, ENCFF956GLJ 7175899 ENCODE Processing Pipeline 3a57633395f2ca0e226df2059964a1e8 https://www.encodeproject.org/files/ENCFF767NVH/@@download/ENCFF767NVH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF885JCS bigBed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF691TLG 12159436 ENCODE Processing Pipeline f921736dc7bd26eac357542ed3250887 https://www.encodeproject.org/files/ENCFF885JCS/@@download/ENCFF885JCS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF069SUW bigWig fold change over control ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF274DDB, ENCFF687LIL, ENCFF956GLJ 2108990163 ENCODE Processing Pipeline a9197c0e9eab50015988a4b6077b6546 https://www.encodeproject.org/files/ENCFF069SUW/@@download/ENCFF069SUW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF932COR bigWig fold change over control ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF687LIL, ENCFF954MFY, ENCFF956GLJ 2027279616 ENCODE Processing Pipeline 3309613bfda9e8ce70b5c1cb71ef0267 https://www.encodeproject.org/files/ENCFF932COR/@@download/ENCFF932COR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF691TLG bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF274DDB, ENCFF687LIL, ENCFF956GLJ 7203051 ENCODE Processing Pipeline bb22cf16bef5812b211f2562074c4912 https://www.encodeproject.org/files/ENCFF691TLG/@@download/ENCFF691TLG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF561MTT bigBed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF957ZSV 12405481 ENCODE Processing Pipeline 723d42d1495f3e3541234a469d5dfa33 https://www.encodeproject.org/files/ENCFF561MTT/@@download/ENCFF561MTT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF328IOZ bed narrowPeak optimal idr thresholded peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF488KHJ, ENCFF625OET, ENCFF957ZSV 682251 ENCODE Processing Pipeline d07cb5c747bbb0c732e3f46f2e793a4b https://www.encodeproject.org/files/ENCFF328IOZ/@@download/ENCFF328IOZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF870WEY bigWig fold change over control ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF093OXI, ENCFF571VVW, ENCFF935JGC 2031520510 ENCODE Processing Pipeline 9d05daefc470d48efef871a2486b2da7 https://www.encodeproject.org/files/ENCFF870WEY/@@download/ENCFF870WEY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF625OET bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE 7193333 ENCODE Processing Pipeline 39c6a1d6ff2c03d44c0b0a0cd0abc75c https://www.encodeproject.org/files/ENCFF625OET/@@download/ENCFF625OET.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF957ZSV bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF093OXI, ENCFF571VVW, ENCFF935JGC 7162873 ENCODE Processing Pipeline fccf32e633236ef2f1eadcd05e030145 https://www.encodeproject.org/files/ENCFF957ZSV/@@download/ENCFF957ZSV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF488KHJ bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE, ENCFF935JGC 7226701 ENCODE Processing Pipeline b50a470fab5ffa69e6e0348168559c58 https://www.encodeproject.org/files/ENCFF488KHJ/@@download/ENCFF488KHJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF444QVX bigBed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF625OET 12146479 ENCODE Processing Pipeline db163e628014bdeaa4fc1e908b9557df https://www.encodeproject.org/files/ENCFF444QVX/@@download/ENCFF444QVX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF229IOE bigWig fold change over control ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF274DDB, ENCFF687LIL, ENCFF954MFY, ENCFF956GLJ 2711226229 ENCODE Processing Pipeline 4100a6dc7546573ac0e0894bf31e064b https://www.encodeproject.org/files/ENCFF229IOE/@@download/ENCFF229IOE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF605MTK bigBed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF488KHJ 11893801 ENCODE Processing Pipeline 1b0364d52a00ff9d1dbcbda8714c20ed https://www.encodeproject.org/files/ENCFF605MTK/@@download/ENCFF605MTK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF469EAH bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF687LIL, ENCFF954MFY, ENCFF956GLJ 7171471 ENCODE Processing Pipeline 5691b5283a305aea27b3f9d61e0df5d1 https://www.encodeproject.org/files/ENCFF469EAH/@@download/ENCFF469EAH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF228MIF bigBed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF469EAH 12426543 ENCODE Processing Pipeline add3b6a625380a52c87e21c526219ab6 https://www.encodeproject.org/files/ENCFF228MIF/@@download/ENCFF228MIF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF689GPW bed narrowPeak optimal idr thresholded peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF419RSJ, ENCFF469EAH, ENCFF691TLG, ENCFF767NVH 680419 ENCODE Processing Pipeline fb526d0a86876d84f29a927ea7cc844a https://www.encodeproject.org/files/ENCFF689GPW/@@download/ENCFF689GPW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF142DOX bigBed narrowPeak optimal idr thresholded peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF328IOZ 1421750 ENCODE Processing Pipeline e866a3348f7e1ba4682c48abc7510f3a https://www.encodeproject.org/files/ENCFF142DOX/@@download/ENCFF142DOX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF728SGL bigBed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF767NVH 11791084 ENCODE Processing Pipeline fa905dc3ec1071f07022c48d479926dc https://www.encodeproject.org/files/ENCFF728SGL/@@download/ENCFF728SGL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF422DVB bigBed narrowPeak optimal idr thresholded peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF689GPW 1409620 ENCODE Processing Pipeline 890ec6713613933cfb292cb3befd4325 https://www.encodeproject.org/files/ENCFF422DVB/@@download/ENCFF422DVB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF365XKE fastq reads ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF148DET 2010723703 Michael Snyder, Stanford 247dfd7e18132812f7fb7a4003ca5bbf SRA:SRR6213951 https://www.encodeproject.org/files/ENCFF365XKE/@@download/ENCFF365XKE.fastq.gz Illumina HiSeq 4000 /files/ENCFF199IYX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF148DET fastq reads ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF365XKE 2159719922 Michael Snyder, Stanford 0170bc652bfb29f34e4526dec94a08e6 SRA:SRR6213951 https://www.encodeproject.org/files/ENCFF148DET/@@download/ENCFF148DET.fastq.gz Illumina HiSeq 4000 /files/ENCFF747IKZ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF710EOU bam unfiltered alignments ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF148DET, ENCFF365XKE, ENCFF807MUK 4058715193 ENCODE Processing Pipeline b5c21b74acabdc497a302cf6be6f3e3e https://www.encodeproject.org/files/ENCFF710EOU/@@download/ENCFF710EOU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF928FSC bam alignments ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF148DET, ENCFF365XKE, ENCFF807MUK 3235240377 ENCODE Processing Pipeline 60dd0d52eb99d911feb7940d57e5344e https://www.encodeproject.org/files/ENCFF928FSC/@@download/ENCFF928FSC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF980SQO bam unfiltered alignments ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF148DET, ENCFF365XKE, ENCFF643CGH 4064263008 ENCODE Processing Pipeline 2d59a493e29e68102c4b9baa9d18223b https://www.encodeproject.org/files/ENCFF980SQO/@@download/ENCFF980SQO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF196CKN bam alignments ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF148DET, ENCFF365XKE, ENCFF643CGH 3238218842 ENCODE Processing Pipeline 5e02b7c0509960be2113abacffcdd640 https://www.encodeproject.org/files/ENCFF196CKN/@@download/ENCFF196CKN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF299VHW bigWig signal p-value ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF744HKB, ENCFF928FSC 1017768475 ENCODE Processing Pipeline a7faa82c4646b6a8113e1791a7a93e5b https://www.encodeproject.org/files/ENCFF299VHW/@@download/ENCFF299VHW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF518QEO bigWig fold change over control ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF744HKB, ENCFF928FSC 986286367 ENCODE Processing Pipeline b81a61375e07c63cd3e84f7afefb5f69 https://www.encodeproject.org/files/ENCFF518QEO/@@download/ENCFF518QEO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF142FYE bed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF744HKB, ENCFF928FSC 5990872 ENCODE Processing Pipeline f8dd3e03ef057fbc2f714c956e7f72d8 https://www.encodeproject.org/files/ENCFF142FYE/@@download/ENCFF142FYE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF625PCT bigBed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF142FYE 11707895 ENCODE Processing Pipeline 8d42c3a170f1a27f163841c77c771b64 https://www.encodeproject.org/files/ENCFF625PCT/@@download/ENCFF625PCT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF665OBP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF142FYE 646417 ENCODE Processing Pipeline 457b941cc82434201d517028c3f5d598 https://www.encodeproject.org/files/ENCFF665OBP/@@download/ENCFF665OBP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF488RFB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF665OBP 1168794 ENCODE Processing Pipeline 0dac99b7e11f02cb305fd1fe8dc564ae https://www.encodeproject.org/files/ENCFF488RFB/@@download/ENCFF488RFB.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF725QYM bigWig signal p-value ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF196CKN, ENCFF621CXJ 961504156 ENCODE Processing Pipeline c0dfb954ffe9f96945909818c98cede7 https://www.encodeproject.org/files/ENCFF725QYM/@@download/ENCFF725QYM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF646FIY bigWig fold change over control ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF196CKN, ENCFF621CXJ 984872442 ENCODE Processing Pipeline a5b3c4ad2e1b0cbae41ede236c6c836a https://www.encodeproject.org/files/ENCFF646FIY/@@download/ENCFF646FIY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF749PCR bed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF196CKN, ENCFF621CXJ 5996749 ENCODE Processing Pipeline b48732b32e020b3e6d00c1d2a8fa5715 https://www.encodeproject.org/files/ENCFF749PCR/@@download/ENCFF749PCR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF631BLT bigBed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF749PCR 11729605 ENCODE Processing Pipeline a80cc59d37aca08cf9196444f57f6c64 https://www.encodeproject.org/files/ENCFF631BLT/@@download/ENCFF631BLT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF136LAP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF749PCR 654499 ENCODE Processing Pipeline c7b0f4129596c4f3e6978adca81e9426 https://www.encodeproject.org/files/ENCFF136LAP/@@download/ENCFF136LAP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF685XXP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF136LAP 1182415 ENCODE Processing Pipeline 2323ca874f60806ebdd6a92eb4bf5b46 https://www.encodeproject.org/files/ENCFF685XXP/@@download/ENCFF685XXP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF845QUV fastq reads ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 2 ENCFF053MVO 3720275186 Michael Snyder, Stanford 0f246493cb974ea9f7b7100de01f2deb SRA:SRR5112195 https://www.encodeproject.org/files/ENCFF845QUV/@@download/ENCFF845QUV.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking ENCFF053MVO fastq reads ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 1 ENCFF845QUV 3492017601 Michael Snyder, Stanford 6a5ccfee7d757dab7c57195d1e70fde1 SRA:SRR5112195 https://www.encodeproject.org/files/ENCFF053MVO/@@download/ENCFF053MVO.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking ENCFF482CBG fastq reads ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 1 ENCFF172SIG 3758015828 Michael Snyder, Stanford a96a874451998e683d0dd8243184021e SRA:SRR5112196 https://www.encodeproject.org/files/ENCFF482CBG/@@download/ENCFF482CBG.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking ENCFF172SIG fastq reads ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 2 ENCFF482CBG 4047671533 Michael Snyder, Stanford a11a205cecdada644d25d92d92e1f94f SRA:SRR5112196 https://www.encodeproject.org/files/ENCFF172SIG/@@download/ENCFF172SIG.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking ENCFF844WOQ bam unfiltered alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 100 ENCFF053MVO, ENCFF643CGH, ENCFF845QUV 6900309613 ENCODE Processing Pipeline 3cd08f5610c793044522edacbd124447 https://www.encodeproject.org/files/ENCFF844WOQ/@@download/ENCFF844WOQ.bam GRCh38 released mild to moderate bottlenecking ENCFF523PJS bam unfiltered alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 100 ENCFF172SIG, ENCFF482CBG, ENCFF807MUK 7353438080 ENCODE Processing Pipeline 0397ffbc2975e7149b4454dc2ab5c9ac https://www.encodeproject.org/files/ENCFF523PJS/@@download/ENCFF523PJS.bam hg19 released mild to moderate bottlenecking ENCFF562HQF bam unfiltered alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 100 ENCFF053MVO, ENCFF807MUK, ENCFF845QUV 6890551701 ENCODE Processing Pipeline 805c491cdbddc9b91ec6e4976f750b0a https://www.encodeproject.org/files/ENCFF562HQF/@@download/ENCFF562HQF.bam hg19 released mild to moderate bottlenecking ENCFF036TDM bam unfiltered alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 100 ENCFF172SIG, ENCFF482CBG, ENCFF643CGH 7363576582 ENCODE Processing Pipeline b38b4011096cfa6a699818dad37c461c https://www.encodeproject.org/files/ENCFF036TDM/@@download/ENCFF036TDM.bam GRCh38 released mild to moderate bottlenecking ENCFF714SYF bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 100 ENCFF053MVO, ENCFF807MUK, ENCFF845QUV 5278853378 ENCODE Processing Pipeline 56da2a2c5c2be1a8fcc64703f0f87f21 https://www.encodeproject.org/files/ENCFF714SYF/@@download/ENCFF714SYF.bam hg19 released mild to moderate bottlenecking ENCFF764EWY bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 100 ENCFF172SIG, ENCFF482CBG, ENCFF643CGH 5423703397 ENCODE Processing Pipeline c5600086ec9c8f22ddbfc80220da7478 https://www.encodeproject.org/files/ENCFF764EWY/@@download/ENCFF764EWY.bam GRCh38 released mild to moderate bottlenecking ENCFF258WGM bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 100 ENCFF053MVO, ENCFF643CGH, ENCFF845QUV 5285337052 ENCODE Processing Pipeline 5839cd4afcb03f5f826821374802e658 https://www.encodeproject.org/files/ENCFF258WGM/@@download/ENCFF258WGM.bam GRCh38 released mild to moderate bottlenecking ENCFF494NAS bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 100 ENCFF172SIG, ENCFF482CBG, ENCFF807MUK 5417035346 ENCODE Processing Pipeline 5b696619702010df2b4fec11b27f1c9e https://www.encodeproject.org/files/ENCFF494NAS/@@download/ENCFF494NAS.bam hg19 released mild to moderate bottlenecking ENCFF103TGM bigWig signal p-value ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF258WGM, ENCFF705ARK, ENCFF802NAW 1821422361 ENCODE Processing Pipeline 8a157e1279720ad5c891c28a015ca463 https://www.encodeproject.org/files/ENCFF103TGM/@@download/ENCFF103TGM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF965RJS bigWig signal p-value ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF258WGM, ENCFF705ARK, ENCFF764EWY, ENCFF802NAW 2372084499 ENCODE Processing Pipeline 8adee6dabb7df848a9032fd6b53770d2 https://www.encodeproject.org/files/ENCFF965RJS/@@download/ENCFF965RJS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF740XPN bigWig signal p-value ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF705ARK, ENCFF764EWY, ENCFF802NAW 1850033088 ENCODE Processing Pipeline 7e4b858f57d6e547435e083996eb8c94 https://www.encodeproject.org/files/ENCFF740XPN/@@download/ENCFF740XPN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF414DVF bigWig fold change over control ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF258WGM, ENCFF705ARK, ENCFF802NAW 2004882122 ENCODE Processing Pipeline f81e8d1340d1df16128f6127974adfbb https://www.encodeproject.org/files/ENCFF414DVF/@@download/ENCFF414DVF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF951CRD bigWig fold change over control ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF705ARK, ENCFF764EWY, ENCFF802NAW 2034128723 ENCODE Processing Pipeline 9eda20b870e7af901ce5a0c984ac1658 https://www.encodeproject.org/files/ENCFF951CRD/@@download/ENCFF951CRD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF890KDF bigWig fold change over control ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF258WGM, ENCFF705ARK, ENCFF764EWY, ENCFF802NAW 2644931530 ENCODE Processing Pipeline 04a10608f5cff0273cd7ab8564216cf3 https://www.encodeproject.org/files/ENCFF890KDF/@@download/ENCFF890KDF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF873ARU bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF258WGM, ENCFF705ARK, ENCFF764EWY, ENCFF802NAW 7243083 ENCODE Processing Pipeline fac286094031189ca8d841f062862d10 https://www.encodeproject.org/files/ENCFF873ARU/@@download/ENCFF873ARU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF964DZH bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF258WGM, ENCFF705ARK, ENCFF802NAW 6915970 ENCODE Processing Pipeline de3b0ed3b494fe21dfcad7e01ae9d516 https://www.encodeproject.org/files/ENCFF964DZH/@@download/ENCFF964DZH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF541PSB bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF705ARK, ENCFF764EWY, ENCFF802NAW 7026025 ENCODE Processing Pipeline d4eee752fe15740e48411c7659108e15 https://www.encodeproject.org/files/ENCFF541PSB/@@download/ENCFF541PSB.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF184ZSC bigBed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF964DZH 11148117 ENCODE Processing Pipeline 6d8e6a80bfd6b136b0c81947708ba1da https://www.encodeproject.org/files/ENCFF184ZSC/@@download/ENCFF184ZSC.bigBed GRCh38 released mild to moderate bottlenecking ENCFF208KNX bigBed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF873ARU 10989009 ENCODE Processing Pipeline 88622ce2d03153f7dceab443f6f599e3 https://www.encodeproject.org/files/ENCFF208KNX/@@download/ENCFF208KNX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF030AXQ bigBed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF541PSB 11084736 ENCODE Processing Pipeline 10c2b4447903553a308d7d134e52a54f https://www.encodeproject.org/files/ENCFF030AXQ/@@download/ENCFF030AXQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF337RFK bed narrowPeak conservative idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF541PSB, ENCFF873ARU, ENCFF964DZH 29293 ENCODE Processing Pipeline 2603fef187967fa3551254ee67539ae3 https://www.encodeproject.org/files/ENCFF337RFK/@@download/ENCFF337RFK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF280GRV bigBed narrowPeak conservative idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF337RFK 103443 ENCODE Processing Pipeline 2d5a06b67adf24ddefaca5cdd5c79c42 https://www.encodeproject.org/files/ENCFF280GRV/@@download/ENCFF280GRV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF959TZW bed narrowPeak optimal idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF541PSB, ENCFF873ARU, ENCFF964DZH 39765 ENCODE Processing Pipeline e092eaf39a95d574012ddae32b31b02a https://www.encodeproject.org/files/ENCFF959TZW/@@download/ENCFF959TZW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF891BCF bigBed narrowPeak optimal idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF959TZW 139149 ENCODE Processing Pipeline 28ddf221ed7f350f8f6148e887959bae https://www.encodeproject.org/files/ENCFF891BCF/@@download/ENCFF891BCF.bigBed GRCh38 released mild to moderate bottlenecking ENCFF137NWW bigWig signal p-value ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 1990509170 ENCODE Processing Pipeline 2a600cb486a0627abf7ece5d364daf3b https://www.encodeproject.org/files/ENCFF137NWW/@@download/ENCFF137NWW.bigWig hg19 released mild to moderate bottlenecking ENCFF475PYE bigWig signal p-value ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF494NAS, ENCFF529BVI, ENCFF772FBN 1563760880 ENCODE Processing Pipeline f4fd9e986e664b7d3170966050b2e3d7 https://www.encodeproject.org/files/ENCFF475PYE/@@download/ENCFF475PYE.bigWig hg19 released mild to moderate bottlenecking ENCFF628SZN bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF494NAS, ENCFF529BVI, ENCFF772FBN 7017958 ENCODE Processing Pipeline 40baa9d3ad2a2333d6635f9b35981915 https://www.encodeproject.org/files/ENCFF628SZN/@@download/ENCFF628SZN.bed.gz hg19 released mild to moderate bottlenecking ENCFF501YAG bigWig signal p-value ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF494NAS, ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 2354727951 ENCODE Processing Pipeline 29a8c521b45b9beed1e162c7c0fb973d https://www.encodeproject.org/files/ENCFF501YAG/@@download/ENCFF501YAG.bigWig hg19 released mild to moderate bottlenecking ENCFF839NJN bigWig fold change over control ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 1999013523 ENCODE Processing Pipeline 0876f7a998db6b98cde45a09154c42f2 https://www.encodeproject.org/files/ENCFF839NJN/@@download/ENCFF839NJN.bigWig hg19 released mild to moderate bottlenecking ENCFF674XTK bigWig fold change over control ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF494NAS, ENCFF529BVI, ENCFF772FBN 2011582522 ENCODE Processing Pipeline cd6d8502116e58e83a9a785fc40ed4c7 https://www.encodeproject.org/files/ENCFF674XTK/@@download/ENCFF674XTK.bigWig hg19 released mild to moderate bottlenecking ENCFF610ARD bigWig fold change over control ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF494NAS, ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 2632319226 ENCODE Processing Pipeline 4fedce23c7a7516421f9c262f40bcbbf https://www.encodeproject.org/files/ENCFF610ARD/@@download/ENCFF610ARD.bigWig hg19 released mild to moderate bottlenecking ENCFF172PDW bigBed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF898EEY 11126421 ENCODE Processing Pipeline 27088d6b31f9c706db4d65edab8c51c3 https://www.encodeproject.org/files/ENCFF172PDW/@@download/ENCFF172PDW.bigBed hg19 released mild to moderate bottlenecking ENCFF135NXA bed narrowPeak conservative idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF355FZF, ENCFF628SZN, ENCFF898EEY 28743 ENCODE Processing Pipeline 9b4cf7fcae9aa78e9cd321772a77733f https://www.encodeproject.org/files/ENCFF135NXA/@@download/ENCFF135NXA.bed.gz hg19 released mild to moderate bottlenecking ENCFF726CWV bigBed narrowPeak optimal idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF203REX 138654 ENCODE Processing Pipeline 934a723e5920c90ba69cf4667d8efb0e https://www.encodeproject.org/files/ENCFF726CWV/@@download/ENCFF726CWV.bigBed hg19 released mild to moderate bottlenecking ENCFF898EEY bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 6910838 ENCODE Processing Pipeline f42633570bd73eb713c2e9cdc00b5c5c https://www.encodeproject.org/files/ENCFF898EEY/@@download/ENCFF898EEY.bed.gz hg19 released mild to moderate bottlenecking ENCFF203REX bed narrowPeak optimal idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF355FZF, ENCFF628SZN, ENCFF898EEY 40876 ENCODE Processing Pipeline 42a3aa6efd4c39b384ad98bd78994d4b https://www.encodeproject.org/files/ENCFF203REX/@@download/ENCFF203REX.bed.gz hg19 released mild to moderate bottlenecking ENCFF875AMN bigBed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF628SZN 11065444 ENCODE Processing Pipeline 6523113cc20e11beba266c798aa869a7 https://www.encodeproject.org/files/ENCFF875AMN/@@download/ENCFF875AMN.bigBed hg19 released mild to moderate bottlenecking ENCFF355FZF bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF494NAS, ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 7223641 ENCODE Processing Pipeline be4cd5ee968ec7df81a94afa45e16111 https://www.encodeproject.org/files/ENCFF355FZF/@@download/ENCFF355FZF.bed.gz hg19 released mild to moderate bottlenecking ENCFF093UVW bigBed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF355FZF 10954463 ENCODE Processing Pipeline 1497a5804bf227a1b26d99d04f6c21aa https://www.encodeproject.org/files/ENCFF093UVW/@@download/ENCFF093UVW.bigBed hg19 released mild to moderate bottlenecking ENCFF511IOT bigBed narrowPeak conservative idr thresholded peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF135NXA 100810 ENCODE Processing Pipeline b41b3bbbd01c5be1b9fbd20feae1d7c4 https://www.encodeproject.org/files/ENCFF511IOT/@@download/ENCFF511IOT.bigBed hg19 released mild to moderate bottlenecking ENCFF438SXQ fastq reads ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1941571810 Richard Myers, HAIB 82ad42d812b24a3df4ae6e5e9bb9c021 SRA:SRR5339347 https://www.encodeproject.org/files/ENCFF438SXQ/@@download/ENCFF438SXQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF633XUQ fastq reads ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2113592423 Richard Myers, HAIB a89a96dc818709c7f4cb933abda967d6 SRA:SRR5339348 https://www.encodeproject.org/files/ENCFF633XUQ/@@download/ENCFF633XUQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF492RWD bam unfiltered alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF438SXQ, ENCFF807MUK 2323287771 ENCODE Processing Pipeline 7d2ffa43e5f0887a1898f6c550ecee94 https://www.encodeproject.org/files/ENCFF492RWD/@@download/ENCFF492RWD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501HGC bam unfiltered alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF633XUQ, ENCFF807MUK 2455602232 ENCODE Processing Pipeline f23fc2a9ba374b20b3f902cf01bc10b6 https://www.encodeproject.org/files/ENCFF501HGC/@@download/ENCFF501HGC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF618MTC bam unfiltered alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF633XUQ, ENCFF643CGH 2461086832 ENCODE Processing Pipeline d423013ad609adfd787ec103af5e2be2 https://www.encodeproject.org/files/ENCFF618MTC/@@download/ENCFF618MTC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF652KLI bam unfiltered alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF438SXQ, ENCFF643CGH 2328838475 ENCODE Processing Pipeline 342d8245b484a0be405a9b90744f9d28 https://www.encodeproject.org/files/ENCFF652KLI/@@download/ENCFF652KLI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF371NEP bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF438SXQ, ENCFF807MUK 1782617473 ENCODE Processing Pipeline 0ec581d657bf198969d586cebef5b291 https://www.encodeproject.org/files/ENCFF371NEP/@@download/ENCFF371NEP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF868KHL bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF633XUQ, ENCFF807MUK 1860643506 ENCODE Processing Pipeline 3a048bd6f003e04b9bdec6651ea6d1d6 https://www.encodeproject.org/files/ENCFF868KHL/@@download/ENCFF868KHL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF448PRG bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF633XUQ, ENCFF643CGH 1861597559 ENCODE Processing Pipeline cc788199cc108b785c18a8cc6611070c https://www.encodeproject.org/files/ENCFF448PRG/@@download/ENCFF448PRG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428YKP bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF438SXQ, ENCFF643CGH 1783537266 ENCODE Processing Pipeline 6ed7d8bf795e34ac8acb8a607f9917fc https://www.encodeproject.org/files/ENCFF428YKP/@@download/ENCFF428YKP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF293BOA bigWig signal p-value ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF448PRG 658700006 ENCODE Processing Pipeline a2791ac4d4d5c6b23de365ed27090a47 https://www.encodeproject.org/files/ENCFF293BOA/@@download/ENCFF293BOA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF657QFN bigWig signal p-value ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF428YKP 636513293 ENCODE Processing Pipeline 19f1999627df13f8c468e5b0a46d08a0 https://www.encodeproject.org/files/ENCFF657QFN/@@download/ENCFF657QFN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970CRM bigWig signal p-value ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF428YKP, ENCFF448PRG 656378861 ENCODE Processing Pipeline ca66ef34342497a2aaae54ce9307755a https://www.encodeproject.org/files/ENCFF970CRM/@@download/ENCFF970CRM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF913PII bigWig fold change over control ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF448PRG 607949262 ENCODE Processing Pipeline a1e551db3af8e57641458c4b28c582c0 https://www.encodeproject.org/files/ENCFF913PII/@@download/ENCFF913PII.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF903STU bigWig fold change over control ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF428YKP 609539432 ENCODE Processing Pipeline 3f7603a209985f9a3e93334ef723671e https://www.encodeproject.org/files/ENCFF903STU/@@download/ENCFF903STU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425LTP bigWig fold change over control ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF428YKP, ENCFF448PRG 1000121921 ENCODE Processing Pipeline 4d44077fddde2ebef291579d8a436d16 https://www.encodeproject.org/files/ENCFF425LTP/@@download/ENCFF425LTP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF580IXX bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF448PRG 6240765 ENCODE Processing Pipeline c383c2ee2f4020e0a544b53accea22f3 https://www.encodeproject.org/files/ENCFF580IXX/@@download/ENCFF580IXX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF938UCU bigBed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF580IXX 12949268 ENCODE Processing Pipeline 9864af3d96592726372207d916a452f9 https://www.encodeproject.org/files/ENCFF938UCU/@@download/ENCFF938UCU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF614KIR bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF428YKP, ENCFF448PRG 6722375 ENCODE Processing Pipeline 470809a1eaebb698074fdb41548a2cd8 https://www.encodeproject.org/files/ENCFF614KIR/@@download/ENCFF614KIR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF655FUP bed narrowPeak conservative idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF171YDU, ENCFF419RSJ, ENCFF580IXX, ENCFF614KIR 695691 ENCODE Processing Pipeline 65647343af687be647169ebe6e8810ee https://www.encodeproject.org/files/ENCFF655FUP/@@download/ENCFF655FUP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF250SHS bigBed narrowPeak optimal idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF541EKJ 1403509 ENCODE Processing Pipeline 16a1ea7da0de0d017889787d039ba81e https://www.encodeproject.org/files/ENCFF250SHS/@@download/ENCFF250SHS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF171YDU bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF428YKP 5962587 ENCODE Processing Pipeline 5e6bfab9cfa683bf686e958f344b0efa https://www.encodeproject.org/files/ENCFF171YDU/@@download/ENCFF171YDU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304DVS bigBed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF171YDU 13188103 ENCODE Processing Pipeline d3c7a9a36e1275804d39df12cc1d6a23 https://www.encodeproject.org/files/ENCFF304DVS/@@download/ENCFF304DVS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF745YKX bigBed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF614KIR 13022712 ENCODE Processing Pipeline d5ae6aed540d0481862842093c5da41b https://www.encodeproject.org/files/ENCFF745YKX/@@download/ENCFF745YKX.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF864CWW bigBed narrowPeak conservative idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF655FUP 1325528 ENCODE Processing Pipeline d1579bf68bc192fa71b4b162244fe519 https://www.encodeproject.org/files/ENCFF864CWW/@@download/ENCFF864CWW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF541EKJ bed narrowPeak optimal idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF171YDU, ENCFF419RSJ, ENCFF580IXX, ENCFF614KIR 748242 ENCODE Processing Pipeline 74eb7f75d548b09f002fb61e4c2e5624 https://www.encodeproject.org/files/ENCFF541EKJ/@@download/ENCFF541EKJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF311III bigWig signal p-value ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF868KHL 1311272997 ENCODE Processing Pipeline 02ad0fefc61a6c2c8c52d37ed060a992 https://www.encodeproject.org/files/ENCFF311III/@@download/ENCFF311III.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321XBA bigWig signal p-value ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF371NEP 1266986051 ENCODE Processing Pipeline 9e44fc293b83adf0cec491c8a0eddab2 https://www.encodeproject.org/files/ENCFF321XBA/@@download/ENCFF321XBA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF668MTT bigWig signal p-value ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF371NEP, ENCFF868KHL 1494406300 ENCODE Processing Pipeline 7d58c3e5283f515f2794a940520b4799 https://www.encodeproject.org/files/ENCFF668MTT/@@download/ENCFF668MTT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF791MAI bigWig fold change over control ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF868KHL 1038477416 ENCODE Processing Pipeline d3195bb64b07d3ddee2f7fd6315dcfd2 https://www.encodeproject.org/files/ENCFF791MAI/@@download/ENCFF791MAI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF473VRU bigWig fold change over control ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF371NEP 1126293313 ENCODE Processing Pipeline ddf8b7450cca97a5aae65197a7592d6f https://www.encodeproject.org/files/ENCFF473VRU/@@download/ENCFF473VRU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF916ADP bigWig fold change over control ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF371NEP, ENCFF868KHL 1631395016 ENCODE Processing Pipeline a7612db583039d95d5558abdb6563910 https://www.encodeproject.org/files/ENCFF916ADP/@@download/ENCFF916ADP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF135KRY bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF868KHL 6587417 ENCODE Processing Pipeline 0a9db420a0a052781c830864eab79ae6 https://www.encodeproject.org/files/ENCFF135KRY/@@download/ENCFF135KRY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF771RJQ bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF371NEP 6506103 ENCODE Processing Pipeline 58b29f71002828a507239a8a02689344 https://www.encodeproject.org/files/ENCFF771RJQ/@@download/ENCFF771RJQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF928PLM bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF371NEP, ENCFF868KHL 6974632 ENCODE Processing Pipeline c8db98966e324437a639f6e1a86544ba https://www.encodeproject.org/files/ENCFF928PLM/@@download/ENCFF928PLM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF761KAX bigBed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF771RJQ 13172426 ENCODE Processing Pipeline 0ffe060bb6e823e3d3a73afe2d957c81 https://www.encodeproject.org/files/ENCFF761KAX/@@download/ENCFF761KAX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF385ICH bigBed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF135KRY 12857976 ENCODE Processing Pipeline 4460a7125f7bdfbf09fbf4cebae5db33 https://www.encodeproject.org/files/ENCFF385ICH/@@download/ENCFF385ICH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517NXJ bigBed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF928PLM 13127989 ENCODE Processing Pipeline 78668c5498da72079acf6fd9e7fe6d62 https://www.encodeproject.org/files/ENCFF517NXJ/@@download/ENCFF517NXJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF787WAI bed narrowPeak conservative idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF135KRY, ENCFF771RJQ, ENCFF928PLM 718619 ENCODE Processing Pipeline 56e17f95b215a59096569fa01ce05f23 https://www.encodeproject.org/files/ENCFF787WAI/@@download/ENCFF787WAI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF487YKX bigBed narrowPeak optimal idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF484WVM 1488633 ENCODE Processing Pipeline ccaf2f9c2af77129c6f4dedf3b037aa4 https://www.encodeproject.org/files/ENCFF487YKX/@@download/ENCFF487YKX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF484WVM bed narrowPeak optimal idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF135KRY, ENCFF771RJQ, ENCFF928PLM 763626 ENCODE Processing Pipeline 68903538af7a7665b4f666544f6e9cb9 https://www.encodeproject.org/files/ENCFF484WVM/@@download/ENCFF484WVM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF716BXV bigBed narrowPeak conservative idr thresholded peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF787WAI 1420211 ENCODE Processing Pipeline 48bc9dd56c16b7bdfc102c87512d05c0 https://www.encodeproject.org/files/ENCFF716BXV/@@download/ENCFF716BXV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF422UUJ bam unfiltered alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 100 ENCFF235JMI, ENCFF807MUK, ENCFF993LLQ 10996470620 ENCODE Processing Pipeline 8c386133e47f55d8bb5846eb7ed0d908 https://www.encodeproject.org/files/ENCFF422UUJ/@@download/ENCFF422UUJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF970QAQ bam unfiltered alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158TRB, ENCFF737EQI, ENCFF807MUK 4572985781 ENCODE Processing Pipeline 728e68eec01aed4ef1e36ad45f270e95 https://www.encodeproject.org/files/ENCFF970QAQ/@@download/ENCFF970QAQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF737EQI fastq reads ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF158TRB 2143789088 Michael Snyder, Stanford da955f5a1495bb4df9153e76dc9f55bc https://www.encodeproject.org/files/ENCFF737EQI/@@download/ENCFF737EQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF993LLQ fastq reads ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF235JMI 5448144573 Michael Snyder, Stanford a21c80540d44c6600d1705516693d6a9 https://www.encodeproject.org/files/ENCFF993LLQ/@@download/ENCFF993LLQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF158TRB fastq reads ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF737EQI 2172829815 Michael Snyder, Stanford afc3d13fd06502dd18f455c81a0d518c https://www.encodeproject.org/files/ENCFF158TRB/@@download/ENCFF158TRB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF235JMI fastq reads ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF993LLQ 5353724299 Michael Snyder, Stanford c552dcbdfaf2830b81d35ebd4c864e0f https://www.encodeproject.org/files/ENCFF235JMI/@@download/ENCFF235JMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF761ADG bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158TRB, ENCFF737EQI, ENCFF807MUK 3413154926 ENCODE Processing Pipeline cf1dc60c897df42f225124834fbd01d2 https://www.encodeproject.org/files/ENCFF761ADG/@@download/ENCFF761ADG.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF605EYP bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 100 ENCFF235JMI, ENCFF807MUK, ENCFF993LLQ 9019722965 ENCODE Processing Pipeline 418999710f2e14b42497c87a73ae07de https://www.encodeproject.org/files/ENCFF605EYP/@@download/ENCFF605EYP.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF257PYN bigWig signal p-value ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF761ADG 1063976909 ENCODE Processing Pipeline 54b7e6d86e9337c85dd4dd5bf11779ac https://www.encodeproject.org/files/ENCFF257PYN/@@download/ENCFF257PYN.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF770YZS bigWig signal p-value ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP 1975741905 ENCODE Processing Pipeline 5fa60fc86d441bfca453d0d23ba5eeb4 https://www.encodeproject.org/files/ENCFF770YZS/@@download/ENCFF770YZS.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF708WMA bigWig fold change over control ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP 2257331967 ENCODE Processing Pipeline 3368db66c17d884b22ae46d0f76dd921 https://www.encodeproject.org/files/ENCFF708WMA/@@download/ENCFF708WMA.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF011JGE bigWig fold change over control ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF761ADG 1078483136 ENCODE Processing Pipeline 86ea777fb48475a6ec45b27ecd8749ef https://www.encodeproject.org/files/ENCFF011JGE/@@download/ENCFF011JGE.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF505CXS bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP, ENCFF761ADG 7276731 ENCODE Processing Pipeline f03019a225e86d921b52d095e8ec8ad2 https://www.encodeproject.org/files/ENCFF505CXS/@@download/ENCFF505CXS.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF527SPW bigWig signal p-value ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP, ENCFF761ADG 2487463034 ENCODE Processing Pipeline 48735c5517a97e3484a6dfb80abd3682 https://www.encodeproject.org/files/ENCFF527SPW/@@download/ENCFF527SPW.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF016YLI bigWig fold change over control ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP, ENCFF761ADG 2521295002 ENCODE Processing Pipeline e0ae76c1e2213e0c2b9029dd627b5fff https://www.encodeproject.org/files/ENCFF016YLI/@@download/ENCFF016YLI.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF756HQJ bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF761ADG 6458710 ENCODE Processing Pipeline 47860d386d60296bafaba33d7797af80 https://www.encodeproject.org/files/ENCFF756HQJ/@@download/ENCFF756HQJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF216JOG bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP 7257353 ENCODE Processing Pipeline 81289654f2e34566512ad9f7d1d7c675 https://www.encodeproject.org/files/ENCFF216JOG/@@download/ENCFF216JOG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF873JQG bigBed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF216JOG 13095550 ENCODE Processing Pipeline 5865f5ee0c596df0472b9d2d990017c1 https://www.encodeproject.org/files/ENCFF873JQG/@@download/ENCFF873JQG.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF668SFF bigBed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF756HQJ 11290027 ENCODE Processing Pipeline 8e30572b62696f08ef472dbf515d57bb https://www.encodeproject.org/files/ENCFF668SFF/@@download/ENCFF668SFF.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF175PMC bigBed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF505CXS 13097265 ENCODE Processing Pipeline 9256f33b04f0e43d18e6a9d85ab91a64 https://www.encodeproject.org/files/ENCFF175PMC/@@download/ENCFF175PMC.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF464ELQ bam unfiltered alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158TRB, ENCFF643CGH, ENCFF737EQI 4576687277 ENCODE Processing Pipeline 6137b5d53642aaeae50304ea8bc174ee https://www.encodeproject.org/files/ENCFF464ELQ/@@download/ENCFF464ELQ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF310XPD bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158TRB, ENCFF643CGH, ENCFF737EQI 3416000228 ENCODE Processing Pipeline 55e6533c3b02ab49dbf2df3f20398c5f https://www.encodeproject.org/files/ENCFF310XPD/@@download/ENCFF310XPD.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF508PWE bam unfiltered alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 100 ENCFF235JMI, ENCFF643CGH, ENCFF993LLQ 11004010272 ENCODE Processing Pipeline 67c8631c5bf275034c32030229177c09 https://www.encodeproject.org/files/ENCFF508PWE/@@download/ENCFF508PWE.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF473BZX bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 100 ENCFF235JMI, ENCFF643CGH, ENCFF993LLQ 9026489866 ENCODE Processing Pipeline 1e75209fdcca9638382b1dd287e8b4a5 https://www.encodeproject.org/files/ENCFF473BZX/@@download/ENCFF473BZX.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF170JGH bigWig signal p-value ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF310XPD, ENCFF910IKB 1103170396 ENCODE Processing Pipeline 56cfa2e3d8529b356987ae7a3ee24592 https://www.encodeproject.org/files/ENCFF170JGH/@@download/ENCFF170JGH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF375PNL bigWig signal p-value ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF473BZX, ENCFF910IKB 2240817233 ENCODE Processing Pipeline 811f1d0526aeab674726dadba64c42b0 https://www.encodeproject.org/files/ENCFF375PNL/@@download/ENCFF375PNL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF678MAQ bigWig signal p-value ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF310XPD, ENCFF473BZX, ENCFF910IKB 2522580185 ENCODE Processing Pipeline 819231c86cc3158386ce63dfb3c38a7a https://www.encodeproject.org/files/ENCFF678MAQ/@@download/ENCFF678MAQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF157NYV bigWig fold change over control ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF310XPD, ENCFF910IKB 1078105045 ENCODE Processing Pipeline af5b179939e57db050a897a9ed7df056 https://www.encodeproject.org/files/ENCFF157NYV/@@download/ENCFF157NYV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF811GBI bigWig fold change over control ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF473BZX, ENCFF910IKB 2253489840 ENCODE Processing Pipeline e98a3794513770900f21b75aff8d40b0 https://www.encodeproject.org/files/ENCFF811GBI/@@download/ENCFF811GBI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF129ETR bigWig fold change over control ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF310XPD, ENCFF473BZX, ENCFF910IKB 2557190446 ENCODE Processing Pipeline 1a131d45f80a64500637938dae1a2f5a https://www.encodeproject.org/files/ENCFF129ETR/@@download/ENCFF129ETR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF374RIS bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF310XPD, ENCFF910IKB 6409839 ENCODE Processing Pipeline d74c71fb967a2bbf8c46e6651290ead9 https://www.encodeproject.org/files/ENCFF374RIS/@@download/ENCFF374RIS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF464TCJ bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF473BZX, ENCFF910IKB 7244753 ENCODE Processing Pipeline 1c67a74c7dc36af613abcd44afc256e2 https://www.encodeproject.org/files/ENCFF464TCJ/@@download/ENCFF464TCJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF637FJI bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF310XPD, ENCFF473BZX, ENCFF910IKB 7274822 ENCODE Processing Pipeline cce24ae13f656822065c4eafe1ab7e37 https://www.encodeproject.org/files/ENCFF637FJI/@@download/ENCFF637FJI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF448JKP bigBed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF374RIS 13435415 ENCODE Processing Pipeline 1ef9d5a8c1cfada6755af568015e0d58 https://www.encodeproject.org/files/ENCFF448JKP/@@download/ENCFF448JKP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF730RUD bigBed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF464TCJ 13099103 ENCODE Processing Pipeline ba7904c96796f4240eb11f08be8a3b42 https://www.encodeproject.org/files/ENCFF730RUD/@@download/ENCFF730RUD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF710PHH bigBed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF637FJI 13100951 ENCODE Processing Pipeline 5e0cde895de1fc66131e44cb8fbfdea4 https://www.encodeproject.org/files/ENCFF710PHH/@@download/ENCFF710PHH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF802XAO bigBed narrowPeak conservative idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF151TIK 232248 ENCODE Processing Pipeline 36604663cbed7c4e7cde4575db5ca4db https://www.encodeproject.org/files/ENCFF802XAO/@@download/ENCFF802XAO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF151TIK bed narrowPeak conservative idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF374RIS, ENCFF419RSJ, ENCFF464TCJ, ENCFF637FJI 86407 ENCODE Processing Pipeline f7809f7fb6a860c0df9f43977c3be589 https://www.encodeproject.org/files/ENCFF151TIK/@@download/ENCFF151TIK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF958YSG bed narrowPeak optimal idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF374RIS, ENCFF419RSJ, ENCFF464TCJ, ENCFF637FJI 150230 ENCODE Processing Pipeline fdb01496814e9dee749648544fe966fd https://www.encodeproject.org/files/ENCFF958YSG/@@download/ENCFF958YSG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF965LQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF958YSG 328933 ENCODE Processing Pipeline fdd815be612941ac7398eebbaf961be1 https://www.encodeproject.org/files/ENCFF965LQJ/@@download/ENCFF965LQJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF301MQS bigBed narrowPeak optimal idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF235ZZP 298177 ENCODE Processing Pipeline 12a6761bd8f92e4e4c24f8291281f016 https://www.encodeproject.org/files/ENCFF301MQS/@@download/ENCFF301MQS.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF235ZZP bed narrowPeak optimal idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF216JOG, ENCFF505CXS, ENCFF756HQJ 129016 ENCODE Processing Pipeline d8ef3cc4d24c5415e9a82592ed82fb4d https://www.encodeproject.org/files/ENCFF235ZZP/@@download/ENCFF235ZZP.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF701QFG bed narrowPeak conservative idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF216JOG, ENCFF505CXS, ENCFF756HQJ 74127 ENCODE Processing Pipeline b04de5e3fbcf71fbd03192b09bb7f09b https://www.encodeproject.org/files/ENCFF701QFG/@@download/ENCFF701QFG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF205TTE bigBed narrowPeak conservative idr thresholded peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF701QFG 174186 ENCODE Processing Pipeline 720e105e2d4479fbb0b57fd7a9758c35 https://www.encodeproject.org/files/ENCFF205TTE/@@download/ENCFF205TTE.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF557MVE fastq reads ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 1 50 single-ended 1181960620 Richard Myers, HAIB 0a82e6214892de4a270f66672470ac4e SRA:SRR5339498 https://www.encodeproject.org/files/ENCFF557MVE/@@download/ENCFF557MVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF564XPO/ released antibody characterized with exemption biological replicates with identical biosample ENCFF450YAP fastq reads ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 1 50 single-ended 1285686141 Richard Myers, HAIB 7e75f2285935343e962e939e6209723e SRA:SRR5339497 https://www.encodeproject.org/files/ENCFF450YAP/@@download/ENCFF450YAP.fastq.gz Illumina HiSeq 2000 /files/ENCFF963TEZ/ released antibody characterized with exemption biological replicates with identical biosample ENCFF875YSN bam unfiltered alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 50 ENCFF557MVE, ENCFF807MUK 1272648537 ENCODE Processing Pipeline 46d2f62ab29520bbd855d73a0e422b1a https://www.encodeproject.org/files/ENCFF875YSN/@@download/ENCFF875YSN.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF448PLJ bam unfiltered alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 50 ENCFF557MVE, ENCFF643CGH 1274638165 ENCODE Processing Pipeline c6898d89e47c5595707319d44b7dd19f https://www.encodeproject.org/files/ENCFF448PLJ/@@download/ENCFF448PLJ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF994LQW bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 50 ENCFF450YAP, ENCFF807MUK 1027060412 ENCODE Processing Pipeline 9fc8e64cf3d18d575a4bf25fa3cc2866 https://www.encodeproject.org/files/ENCFF994LQW/@@download/ENCFF994LQW.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF568JWW bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 50 ENCFF557MVE, ENCFF807MUK 978807838 ENCODE Processing Pipeline 42b0281e81d54d9a63754c5eb63d018a https://www.encodeproject.org/files/ENCFF568JWW/@@download/ENCFF568JWW.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF912DCK bam unfiltered alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 50 ENCFF450YAP, ENCFF643CGH 1346925100 ENCODE Processing Pipeline b9df84b754bb98c31d060d40c8f0f941 https://www.encodeproject.org/files/ENCFF912DCK/@@download/ENCFF912DCK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF596BCZ bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 50 ENCFF557MVE, ENCFF643CGH 978845127 ENCODE Processing Pipeline 3674f191d445bc3e4a5cf865719800a4 https://www.encodeproject.org/files/ENCFF596BCZ/@@download/ENCFF596BCZ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF594YKY bam unfiltered alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 50 ENCFF450YAP, ENCFF807MUK 1345294064 ENCODE Processing Pipeline de9a8f35e9f8a2261dfe0e05c5d90573 https://www.encodeproject.org/files/ENCFF594YKY/@@download/ENCFF594YKY.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF091YVC bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 50 ENCFF450YAP, ENCFF643CGH 1027036560 ENCODE Processing Pipeline 78021f729889e824d12bd0a51f6c0c93 https://www.encodeproject.org/files/ENCFF091YVC/@@download/ENCFF091YVC.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF509KUY bigWig signal p-value ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM 702226874 ENCODE Processing Pipeline c10f040107367b31ff0f0402f1286dd3 https://www.encodeproject.org/files/ENCFF509KUY/@@download/ENCFF509KUY.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF315GNC bigBed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF142WNN 12899158 ENCODE Processing Pipeline ddd347bd9df5e632849f5281acf1b3ae https://www.encodeproject.org/files/ENCFF315GNC/@@download/ENCFF315GNC.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF945IWI bigWig signal p-value ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF876ZSM, ENCFF994LQW 481000405 ENCODE Processing Pipeline c8c6bdf797d9c7c8717e207b55ee6f74 https://www.encodeproject.org/files/ENCFF945IWI/@@download/ENCFF945IWI.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF142WNN bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF876ZSM, ENCFF994LQW 6253188 ENCODE Processing Pipeline 4f226b6cef40ff1c97d42b6fe5b8cfdf https://www.encodeproject.org/files/ENCFF142WNN/@@download/ENCFF142WNN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF371IUU bigBed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF494HET 13072201 ENCODE Processing Pipeline c581a4128f54b60c2ae2c647659b77fc https://www.encodeproject.org/files/ENCFF371IUU/@@download/ENCFF371IUU.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF109RQV bed narrowPeak conservative idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF142WNN, ENCFF342UVO, ENCFF494HET 759979 ENCODE Processing Pipeline 18a46bec27819d812cae6410be10dd9a https://www.encodeproject.org/files/ENCFF109RQV/@@download/ENCFF109RQV.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF701CDH bigWig fold change over control ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM 541076136 ENCODE Processing Pipeline 9064f2f4fd5ef1c173afd446c43394d7 https://www.encodeproject.org/files/ENCFF701CDH/@@download/ENCFF701CDH.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF494HET bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM 6338679 ENCODE Processing Pipeline 64d58df1142ed1b7e9639e7afeaf50a6 https://www.encodeproject.org/files/ENCFF494HET/@@download/ENCFF494HET.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF342UVO bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM, ENCFF994LQW 6893084 ENCODE Processing Pipeline b2c44c494bdfaa7024b07593cf66c22b https://www.encodeproject.org/files/ENCFF342UVO/@@download/ENCFF342UVO.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF279DYD bigBed narrowPeak conservative idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF109RQV 1580171 ENCODE Processing Pipeline ebf621bba01acd2d4c629fa54737d47e https://www.encodeproject.org/files/ENCFF279DYD/@@download/ENCFF279DYD.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF943FWM bigWig signal p-value ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM, ENCFF994LQW 900523776 ENCODE Processing Pipeline 34ac701556a8c6a8e4d20a24f1436a6a https://www.encodeproject.org/files/ENCFF943FWM/@@download/ENCFF943FWM.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF285UTG bigWig fold change over control ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF876ZSM, ENCFF994LQW 432780783 ENCODE Processing Pipeline 31e08bfc98dc95c478eb114d0b35e272 https://www.encodeproject.org/files/ENCFF285UTG/@@download/ENCFF285UTG.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF602CSC bigBed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF342UVO 13050155 ENCODE Processing Pipeline 7770bc93cce86cda9bb42a646053993c https://www.encodeproject.org/files/ENCFF602CSC/@@download/ENCFF602CSC.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF910BJG bigBed narrowPeak optimal idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF476TIZ 1662803 ENCODE Processing Pipeline 7547d27846a7f1947e0609ec0435a1d3 https://www.encodeproject.org/files/ENCFF910BJG/@@download/ENCFF910BJG.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF122IVA bigWig fold change over control ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM, ENCFF994LQW 886753018 ENCODE Processing Pipeline 474d1c097410ba6f88df8e2738607e3b https://www.encodeproject.org/files/ENCFF122IVA/@@download/ENCFF122IVA.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF476TIZ bed narrowPeak optimal idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF142WNN, ENCFF342UVO, ENCFF494HET 814178 ENCODE Processing Pipeline 074d9fbb58b000a0b57810f7030046fa https://www.encodeproject.org/files/ENCFF476TIZ/@@download/ENCFF476TIZ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF954CTO bigWig signal p-value ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF091YVC, ENCFF802YSD 480903342 ENCODE Processing Pipeline e2bfa39f1c09e51cd2b25ee2a7aea53c https://www.encodeproject.org/files/ENCFF954CTO/@@download/ENCFF954CTO.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF259EKX bigWig signal p-value ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF091YVC, ENCFF389HKQ, ENCFF596BCZ, ENCFF802YSD 900253783 ENCODE Processing Pipeline f5569a92b899d5330cc2d140d94d1064 https://www.encodeproject.org/files/ENCFF259EKX/@@download/ENCFF259EKX.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF549CNS bigWig signal p-value ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF389HKQ, ENCFF596BCZ, ENCFF802YSD 654016629 ENCODE Processing Pipeline 070dad03da474f4fc65789ddee057293 https://www.encodeproject.org/files/ENCFF549CNS/@@download/ENCFF549CNS.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF387VYF bigWig fold change over control ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF389HKQ, ENCFF596BCZ, ENCFF802YSD 540920508 ENCODE Processing Pipeline 7c87f5666250682d83c01000c4635d43 https://www.encodeproject.org/files/ENCFF387VYF/@@download/ENCFF387VYF.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF348SHM bigWig fold change over control ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF091YVC, ENCFF802YSD 433498043 ENCODE Processing Pipeline b5770440f1e2088bed81ad95241ffcf5 https://www.encodeproject.org/files/ENCFF348SHM/@@download/ENCFF348SHM.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF912TKR bigWig fold change over control ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF091YVC, ENCFF389HKQ, ENCFF596BCZ, ENCFF802YSD 886930765 ENCODE Processing Pipeline 1e9e912392e9457f654796463b43b872 https://www.encodeproject.org/files/ENCFF912TKR/@@download/ENCFF912TKR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF678VRH bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF389HKQ, ENCFF596BCZ, ENCFF802YSD 6148504 ENCODE Processing Pipeline 7f3652dce7a3345cefc71ed13df3faae https://www.encodeproject.org/files/ENCFF678VRH/@@download/ENCFF678VRH.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF042CMN bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF091YVC, ENCFF389HKQ, ENCFF596BCZ, ENCFF802YSD 6837418 ENCODE Processing Pipeline 184017cf54addb62d7c595abe15b7789 https://www.encodeproject.org/files/ENCFF042CMN/@@download/ENCFF042CMN.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF272ECF bigBed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF523QCL 12925577 ENCODE Processing Pipeline a7874754e0cd8b807ae0bb83486ffa0c https://www.encodeproject.org/files/ENCFF272ECF/@@download/ENCFF272ECF.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF523QCL bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF091YVC, ENCFF802YSD 6107111 ENCODE Processing Pipeline 8743701e1736a366d44a71e2554336bd https://www.encodeproject.org/files/ENCFF523QCL/@@download/ENCFF523QCL.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF095RVV bigBed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF678VRH 13001006 ENCODE Processing Pipeline ee9b42205b2a48c86c9c72a96639f210 https://www.encodeproject.org/files/ENCFF095RVV/@@download/ENCFF095RVV.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF188IVF bigBed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF042CMN 13055518 ENCODE Processing Pipeline 8f8678508240aec7d59de6271a8add05 https://www.encodeproject.org/files/ENCFF188IVF/@@download/ENCFF188IVF.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF953CWR bigBed narrowPeak conservative idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF336GTB 1582819 ENCODE Processing Pipeline 3e812b0675076039b80bf683cf55e82e https://www.encodeproject.org/files/ENCFF953CWR/@@download/ENCFF953CWR.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF336GTB bed narrowPeak conservative idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF042CMN, ENCFF419RSJ, ENCFF523QCL, ENCFF678VRH 761389 ENCODE Processing Pipeline ba36bd012b6e4cb938532a2188ee91aa https://www.encodeproject.org/files/ENCFF336GTB/@@download/ENCFF336GTB.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF730DVC bed narrowPeak optimal idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF042CMN, ENCFF419RSJ, ENCFF523QCL, ENCFF678VRH 817975 ENCODE Processing Pipeline c4b102a6c7534b35aca4e787589dabd0 https://www.encodeproject.org/files/ENCFF730DVC/@@download/ENCFF730DVC.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF897BDB bigBed narrowPeak optimal idr thresholded peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF730DVC 1668368 ENCODE Processing Pipeline 67a26d89576e90a2aaa7249d8d263581 https://www.encodeproject.org/files/ENCFF897BDB/@@download/ENCFF897BDB.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF131MJT fastq reads ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 1 50 single-ended 2458979500 Richard Myers, HAIB 0b050d0c479329eda18ab63b73b723c8 SRA:SRR5339428 https://www.encodeproject.org/files/ENCFF131MJT/@@download/ENCFF131MJT.fastq.gz Illumina HiSeq 2000 /files/ENCFF963TEZ/ released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF291CUA fastq reads ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 1 50 single-ended 890094923 Richard Myers, HAIB 6ea2b47512fe74dd2924f3e77c144564 SRA:SRR5339429 https://www.encodeproject.org/files/ENCFF291CUA/@@download/ENCFF291CUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF564XPO/ released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF028MMF bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 50 ENCFF291CUA, ENCFF643CGH 771027834 ENCODE Processing Pipeline 0bbebbfd6dd72afabe71b4e618187aad https://www.encodeproject.org/files/ENCFF028MMF/@@download/ENCFF028MMF.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF103FSR bam unfiltered alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 50 ENCFF291CUA, ENCFF807MUK 985529197 ENCODE Processing Pipeline cda9564ad36ea8aa83f193485fff8d7e https://www.encodeproject.org/files/ENCFF103FSR/@@download/ENCFF103FSR.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF491KWW bam unfiltered alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 50 ENCFF131MJT, ENCFF643CGH 2576717786 ENCODE Processing Pipeline e81ca68f69f9b1fc8f726045e08555cb https://www.encodeproject.org/files/ENCFF491KWW/@@download/ENCFF491KWW.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF953GGK bam unfiltered alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 50 ENCFF291CUA, ENCFF643CGH 987480254 ENCODE Processing Pipeline 58a740525fc53b9476ddff11c3f53a7f https://www.encodeproject.org/files/ENCFF953GGK/@@download/ENCFF953GGK.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF432VHJ bam unfiltered alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 50 ENCFF131MJT, ENCFF807MUK 2571549508 ENCODE Processing Pipeline fb06720ad9ab796b66ebbec0a8b81124 https://www.encodeproject.org/files/ENCFF432VHJ/@@download/ENCFF432VHJ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF506GHT bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 50 ENCFF291CUA, ENCFF807MUK 771021370 ENCODE Processing Pipeline fb2dc92d7405155a7a8dd9bc7878e2ed https://www.encodeproject.org/files/ENCFF506GHT/@@download/ENCFF506GHT.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF198OIE bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 50 ENCFF131MJT, ENCFF643CGH 1940925224 ENCODE Processing Pipeline ec0eeeaa308c4d4089d8e99fe0ceb57d https://www.encodeproject.org/files/ENCFF198OIE/@@download/ENCFF198OIE.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF242CKK bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 50 ENCFF131MJT, ENCFF807MUK 1940787352 ENCODE Processing Pipeline 9eb844526b9b7a4b64b29e9a124374ea https://www.encodeproject.org/files/ENCFF242CKK/@@download/ENCFF242CKK.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF533SID bed narrowPeak conservative idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF001TDO, ENCFF151FHL, ENCFF664WRF, ENCFF764LKV 672951 ENCODE Processing Pipeline 11c71025245479a0d34ea820314815cc https://www.encodeproject.org/files/ENCFF533SID/@@download/ENCFF533SID.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF151FHL bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF242CKK, ENCFF506GHT, ENCFF829HKP, ENCFF876ZSM 7025694 ENCODE Processing Pipeline 0293b98eb8f7c1e8ce1e95ea21e21043 https://www.encodeproject.org/files/ENCFF151FHL/@@download/ENCFF151FHL.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF559UKB bigBed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF764LKV 11120530 ENCODE Processing Pipeline 08e21c167e87d8245553f03228aab57d https://www.encodeproject.org/files/ENCFF559UKB/@@download/ENCFF559UKB.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF583SRK bigWig fold change over control ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF506GHT, ENCFF829HKP 357877284 ENCODE Processing Pipeline dd87b5e6dc394500f7d17e0b180c2136 https://www.encodeproject.org/files/ENCFF583SRK/@@download/ENCFF583SRK.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF854UZZ bigWig fold change over control ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF242CKK, ENCFF506GHT, ENCFF829HKP, ENCFF876ZSM 1183149414 ENCODE Processing Pipeline c63166b3963c55e36e7e30f415e0fe44 https://www.encodeproject.org/files/ENCFF854UZZ/@@download/ENCFF854UZZ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF664WRF bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF242CKK, ENCFF829HKP, ENCFF876ZSM 6681557 ENCODE Processing Pipeline b6d6cc854cc2453c88911a79acc86452 https://www.encodeproject.org/files/ENCFF664WRF/@@download/ENCFF664WRF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF206KBF bigBed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF664WRF 13294504 ENCODE Processing Pipeline ce50072af237d9d0c4c5ec0deb162828 https://www.encodeproject.org/files/ENCFF206KBF/@@download/ENCFF206KBF.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF609YIG bigBed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF151FHL 13491352 ENCODE Processing Pipeline d55f01fc21897a63c88bd0660d196a80 https://www.encodeproject.org/files/ENCFF609YIG/@@download/ENCFF609YIG.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF628OTI bigWig signal p-value ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF506GHT, ENCFF829HKP 509380674 ENCODE Processing Pipeline 1adb1f12023589c4049c227d94b2b140 https://www.encodeproject.org/files/ENCFF628OTI/@@download/ENCFF628OTI.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF902QFZ bigWig signal p-value ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF242CKK, ENCFF506GHT, ENCFF829HKP, ENCFF876ZSM 929195950 ENCODE Processing Pipeline af31232464bb3b4d54d1680c49220272 https://www.encodeproject.org/files/ENCFF902QFZ/@@download/ENCFF902QFZ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF688OMX bigWig fold change over control ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF242CKK, ENCFF829HKP, ENCFF876ZSM 944763294 ENCODE Processing Pipeline af6bb8b9d1a10c8758392ad4413ac0b0 https://www.encodeproject.org/files/ENCFF688OMX/@@download/ENCFF688OMX.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF764LKV bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF506GHT, ENCFF829HKP 5339710 ENCODE Processing Pipeline 2f06292ed2403141ca58fc1cea1a60e5 https://www.encodeproject.org/files/ENCFF764LKV/@@download/ENCFF764LKV.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF897LDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF533SID 1137629 ENCODE Processing Pipeline 6f2fbfb9d1b090525bfcb44ab9b794a7 https://www.encodeproject.org/files/ENCFF897LDZ/@@download/ENCFF897LDZ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF318BMP bigBed narrowPeak optimal idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF501XJA 1442495 ENCODE Processing Pipeline 011ee2a83231c2fd04c0a70e6c6e8483 https://www.encodeproject.org/files/ENCFF318BMP/@@download/ENCFF318BMP.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF938VSN bigWig signal p-value ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF242CKK, ENCFF829HKP, ENCFF876ZSM 947032746 ENCODE Processing Pipeline 132e568fe60621c75cb5c3e0bb78b96e https://www.encodeproject.org/files/ENCFF938VSN/@@download/ENCFF938VSN.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF501XJA bed narrowPeak optimal idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF001TDO, ENCFF151FHL, ENCFF664WRF, ENCFF764LKV 907481 ENCODE Processing Pipeline f4b607f284f03be176612d624cb7a16b https://www.encodeproject.org/files/ENCFF501XJA/@@download/ENCFF501XJA.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF597WXC bigWig signal p-value ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF028MMF, ENCFF389HKQ 467344526 ENCODE Processing Pipeline 3ab4036252a82e5f485b2630072c6c35 https://www.encodeproject.org/files/ENCFF597WXC/@@download/ENCFF597WXC.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF812CSA bigWig signal p-value ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF198OIE, ENCFF389HKQ, ENCFF802YSD 946792457 ENCODE Processing Pipeline 75cb1758021008a0e56a393039684fc1 https://www.encodeproject.org/files/ENCFF812CSA/@@download/ENCFF812CSA.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF630XHQ bigWig signal p-value ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF028MMF, ENCFF198OIE, ENCFF389HKQ, ENCFF802YSD 911228323 ENCODE Processing Pipeline 667b8a63308c7df1b5d2f16b07453999 https://www.encodeproject.org/files/ENCFF630XHQ/@@download/ENCFF630XHQ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF143WTJ bigWig fold change over control ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF198OIE, ENCFF389HKQ, ENCFF802YSD 944897985 ENCODE Processing Pipeline d5a00a5cbdee1a89e91f380894c593d3 https://www.encodeproject.org/files/ENCFF143WTJ/@@download/ENCFF143WTJ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF581ZOP bigWig fold change over control ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF028MMF, ENCFF389HKQ 365006749 ENCODE Processing Pipeline b4af8ee9e4f1962660eb4c7fe5df45d5 https://www.encodeproject.org/files/ENCFF581ZOP/@@download/ENCFF581ZOP.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF573DQZ bigWig fold change over control ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF028MMF, ENCFF198OIE, ENCFF389HKQ, ENCFF802YSD 1182658911 ENCODE Processing Pipeline 64e70923b1ba0416fdfa7357848f7d45 https://www.encodeproject.org/files/ENCFF573DQZ/@@download/ENCFF573DQZ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF567VCA bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF028MMF, ENCFF389HKQ 5289345 ENCODE Processing Pipeline f9b98367c7690814af53bde91c7a8cbf https://www.encodeproject.org/files/ENCFF567VCA/@@download/ENCFF567VCA.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF119CLS bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF198OIE, ENCFF389HKQ, ENCFF802YSD 6702105 ENCODE Processing Pipeline fc5555d68a912f48b0afc02ed8ce283d https://www.encodeproject.org/files/ENCFF119CLS/@@download/ENCFF119CLS.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF301KIQ bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF028MMF, ENCFF198OIE, ENCFF389HKQ, ENCFF802YSD 6993984 ENCODE Processing Pipeline 0194faddf7afd359561169c4bf8684a1 https://www.encodeproject.org/files/ENCFF301KIQ/@@download/ENCFF301KIQ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF634UPK bigBed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF567VCA 11136659 ENCODE Processing Pipeline 4e7244012bb2a3dcff652c3c02d49952 https://www.encodeproject.org/files/ENCFF634UPK/@@download/ENCFF634UPK.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF790DED bigBed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF119CLS 13434503 ENCODE Processing Pipeline cc18641dc08134c3fa8c99e5c3a43e24 https://www.encodeproject.org/files/ENCFF790DED/@@download/ENCFF790DED.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF700RVF bigBed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF301KIQ 13509681 ENCODE Processing Pipeline 249ff18ae83baaa733b6f74c04318857 https://www.encodeproject.org/files/ENCFF700RVF/@@download/ENCFF700RVF.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF139ARB bigBed narrowPeak conservative idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF244SJK 1146158 ENCODE Processing Pipeline e7e0a8d22f1845ede625f02d4f761118 https://www.encodeproject.org/files/ENCFF139ARB/@@download/ENCFF139ARB.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF244SJK bed narrowPeak conservative idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF119CLS, ENCFF301KIQ, ENCFF419RSJ, ENCFF567VCA 677670 ENCODE Processing Pipeline 05c48ac3714e109167cce6d849a1d7bc https://www.encodeproject.org/files/ENCFF244SJK/@@download/ENCFF244SJK.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF482JUI bed narrowPeak optimal idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF119CLS, ENCFF301KIQ, ENCFF419RSJ, ENCFF567VCA 922646 ENCODE Processing Pipeline 328e2c3f9628b614851e34be8e4b3b9c https://www.encodeproject.org/files/ENCFF482JUI/@@download/ENCFF482JUI.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF452DTN bigBed narrowPeak optimal idr thresholded peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1, 2 ENCFF482JUI 1464480 ENCODE Processing Pipeline 108c1b0748a21d51ab9c96012a70332b https://www.encodeproject.org/files/ENCFF452DTN/@@download/ENCFF452DTN.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF389LQC fastq reads ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 844320730 Richard Myers, HAIB 4fe9c8fabbb7c7898f34a50bd19c2334 https://www.encodeproject.org/files/ENCFF389LQC/@@download/ENCFF389LQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF132PDR fastq reads ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 969494646 Richard Myers, HAIB 948c759f2f29f75842dd13e3f3ee17db https://www.encodeproject.org/files/ENCFF132PDR/@@download/ENCFF132PDR.fastq.gz Illumina HiSeq 2000 /files/ENCFF123QZN/ released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF710QBQ bigWig signal p-value ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL 767748037 ENCODE Processing Pipeline 6b9d0c5dccaa2ec8d7f4e1c6e993aa6a https://www.encodeproject.org/files/ENCFF710QBQ/@@download/ENCFF710QBQ.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF698QJL bigWig fold change over control ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL 610371356 ENCODE Processing Pipeline edfe223759b2955b5380341c290a647c https://www.encodeproject.org/files/ENCFF698QJL/@@download/ENCFF698QJL.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF909QBF bam unfiltered alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF132PDR, ENCFF643CGH 1058601292 ENCODE Processing Pipeline 6b86d7438e372918d02b7e863e0e96a9 https://www.encodeproject.org/files/ENCFF909QBF/@@download/ENCFF909QBF.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF174ZGG bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF132PDR, ENCFF643CGH 805226909 ENCODE Processing Pipeline eeb21cadcc151a064ac5e3b993efca89 https://www.encodeproject.org/files/ENCFF174ZGG/@@download/ENCFF174ZGG.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF607CWH bam unfiltered alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF389LQC, ENCFF643CGH 959366349 ENCODE Processing Pipeline b2ee2b43bad688d772564df7f8e0a554 https://www.encodeproject.org/files/ENCFF607CWH/@@download/ENCFF607CWH.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF995SEN bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF389LQC, ENCFF643CGH 723446775 ENCODE Processing Pipeline 4ea8a7f2403fc6917d81b7154acf6bf7 https://www.encodeproject.org/files/ENCFF995SEN/@@download/ENCFF995SEN.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF262SKA bigWig signal p-value ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF610PNU, ENCFF995SEN 762472387 ENCODE Processing Pipeline 0458935d3bf11bbc88400dd77f4ef3c0 https://www.encodeproject.org/files/ENCFF262SKA/@@download/ENCFF262SKA.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF527QQW bigWig signal p-value ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF174ZGG, ENCFF337WHA, ENCFF610PNU, ENCFF995SEN 868090433 ENCODE Processing Pipeline 0023e63e24b7732e0819a4fbaf89577d https://www.encodeproject.org/files/ENCFF527QQW/@@download/ENCFF527QQW.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF100DVH bigWig fold change over control ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF174ZGG, ENCFF337WHA, ENCFF610PNU 592901060 ENCODE Processing Pipeline 28932a4104667d007348c9da70cbb520 https://www.encodeproject.org/files/ENCFF100DVH/@@download/ENCFF100DVH.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF558VEP bigWig signal p-value ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF174ZGG, ENCFF337WHA, ENCFF610PNU 885286393 ENCODE Processing Pipeline 41177b075709f55e614504f60fa62864 https://www.encodeproject.org/files/ENCFF558VEP/@@download/ENCFF558VEP.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF960NYN bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF610PNU, ENCFF995SEN 5656374 ENCODE Processing Pipeline 051d483928eeb77d9fecb282a3fce31e https://www.encodeproject.org/files/ENCFF960NYN/@@download/ENCFF960NYN.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF968MST bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF174ZGG, ENCFF337WHA, ENCFF610PNU 5500473 ENCODE Processing Pipeline ce1cfe43671a066ab9d2d78c530b17b7 https://www.encodeproject.org/files/ENCFF968MST/@@download/ENCFF968MST.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF086GJP bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF174ZGG, ENCFF337WHA, ENCFF610PNU, ENCFF995SEN 6159734 ENCODE Processing Pipeline c5fdb9218837501e0789a1dadfb9bc40 https://www.encodeproject.org/files/ENCFF086GJP/@@download/ENCFF086GJP.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF919AEJ bigWig fold change over control ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF610PNU, ENCFF995SEN 606114419 ENCODE Processing Pipeline 2d62a4f492c44a87321e22c824f94b2b https://www.encodeproject.org/files/ENCFF919AEJ/@@download/ENCFF919AEJ.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF971SPU bigWig fold change over control ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF174ZGG, ENCFF337WHA, ENCFF610PNU, ENCFF995SEN 974024094 ENCODE Processing Pipeline df99f454538f707582ee1c5c235f3fd5 https://www.encodeproject.org/files/ENCFF971SPU/@@download/ENCFF971SPU.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF378YOB bigBed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF086GJP 13562644 ENCODE Processing Pipeline 777a2fae54fadccbcd429c3ec1e9e215 https://www.encodeproject.org/files/ENCFF378YOB/@@download/ENCFF378YOB.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF693ZZY bigBed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF960NYN 13465943 ENCODE Processing Pipeline a7d92bb81e06e6d66d6882d597e1fed3 https://www.encodeproject.org/files/ENCFF693ZZY/@@download/ENCFF693ZZY.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF556CZO bigBed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF968MST 11377044 ENCODE Processing Pipeline 8c5262d4c87ac6c67f8aaaa029438d2c https://www.encodeproject.org/files/ENCFF556CZO/@@download/ENCFF556CZO.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF668CLC bed narrowPeak conservative idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF086GJP, ENCFF419RSJ, ENCFF960NYN, ENCFF968MST 304515 ENCODE Processing Pipeline d5c93ef0f523999156a0b4334a5f66d4 https://www.encodeproject.org/files/ENCFF668CLC/@@download/ENCFF668CLC.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF309VIA bigBed narrowPeak conservative idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF668CLC 669785 ENCODE Processing Pipeline 1d5c937f21169410b708b9a298f4ac1d https://www.encodeproject.org/files/ENCFF309VIA/@@download/ENCFF309VIA.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF617JQS bed narrowPeak optimal idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF086GJP, ENCFF419RSJ, ENCFF960NYN, ENCFF968MST 341923 ENCODE Processing Pipeline 49b41dece0ca596f3d0edc8cec227e0f https://www.encodeproject.org/files/ENCFF617JQS/@@download/ENCFF617JQS.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF600JOT bigBed narrowPeak optimal idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF617JQS 734570 ENCODE Processing Pipeline 5bdc0684ac004d0d4ac6785fd0279f77 https://www.encodeproject.org/files/ENCFF600JOT/@@download/ENCFF600JOT.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF991LRY bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF132PDR, ENCFF807MUK 805243507 ENCODE Processing Pipeline 84edea1c709720ab79080f2a0353bdad https://www.encodeproject.org/files/ENCFF991LRY/@@download/ENCFF991LRY.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF475SVL bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF389LQC, ENCFF807MUK 723432578 ENCODE Processing Pipeline ef7c8a30dfa6d716449517f934a71eb9 https://www.encodeproject.org/files/ENCFF475SVL/@@download/ENCFF475SVL.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF518QYN bam unfiltered alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF132PDR, ENCFF807MUK 1053611773 ENCODE Processing Pipeline aed38e04c0ed200396ab994fbbeeca2b https://www.encodeproject.org/files/ENCFF518QYN/@@download/ENCFF518QYN.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF481REM bam unfiltered alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF389LQC, ENCFF807MUK 954063822 ENCODE Processing Pipeline 0b32608810f695c1b4fff49f085c311d https://www.encodeproject.org/files/ENCFF481REM/@@download/ENCFF481REM.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF665MGN bigWig signal p-value ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL, ENCFF991LRY 925112577 ENCODE Processing Pipeline cac38711006af55312066c7c0132ad50 https://www.encodeproject.org/files/ENCFF665MGN/@@download/ENCFF665MGN.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF547HCV bigWig fold change over control ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF991LRY 596784811 ENCODE Processing Pipeline 3c00bcacecf7b47304c8cb90fd6bd375 https://www.encodeproject.org/files/ENCFF547HCV/@@download/ENCFF547HCV.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF981ZME bigBed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF876JTC 11365215 ENCODE Processing Pipeline fa2ea8c792665d4bbc8b64091f3ec778 https://www.encodeproject.org/files/ENCFF981ZME/@@download/ENCFF981ZME.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF603GMZ bed narrowPeak conservative idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF484TJY, ENCFF560WHY, ENCFF876JTC 308492 ENCODE Processing Pipeline 185aec586e48d2b91a3e674b84e913de https://www.encodeproject.org/files/ENCFF603GMZ/@@download/ENCFF603GMZ.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF424TMM bigBed narrowPeak conservative idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF603GMZ 673553 ENCODE Processing Pipeline 55134932a3ace5612fea587debf4787d https://www.encodeproject.org/files/ENCFF424TMM/@@download/ENCFF424TMM.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF460VSP bigBed narrowPeak optimal idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF862SRI 745020 ENCODE Processing Pipeline f6c9dfc71dceb583203e3a1201d14a82 https://www.encodeproject.org/files/ENCFF460VSP/@@download/ENCFF460VSP.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF939EEO bigBed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF560WHY 13568680 ENCODE Processing Pipeline 11e9ea8be106369e14e8925d87da7cc1 https://www.encodeproject.org/files/ENCFF939EEO/@@download/ENCFF939EEO.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF007HKT bigWig signal p-value ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF991LRY 773499719 ENCODE Processing Pipeline 6da5e78820d7d5d4d0423b427ae337a3 https://www.encodeproject.org/files/ENCFF007HKT/@@download/ENCFF007HKT.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF802GPL bigWig fold change over control ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL, ENCFF991LRY 955044771 ENCODE Processing Pipeline 0b881ffcf3d9f7c959a3c1dcd8ce575a https://www.encodeproject.org/files/ENCFF802GPL/@@download/ENCFF802GPL.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF876JTC bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF991LRY 5502916 ENCODE Processing Pipeline 663e8cff958659837f3a59336b470f2e https://www.encodeproject.org/files/ENCFF876JTC/@@download/ENCFF876JTC.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF707KJP bigBed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF484TJY 13476661 ENCODE Processing Pipeline 7483661736abd8707731c975c094b6d8 https://www.encodeproject.org/files/ENCFF707KJP/@@download/ENCFF707KJP.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF484TJY bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL 5724092 ENCODE Processing Pipeline 05d2bd2e4c29d2d4d58ec91760b0afb0 https://www.encodeproject.org/files/ENCFF484TJY/@@download/ENCFF484TJY.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF560WHY bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL, ENCFF991LRY 6203756 ENCODE Processing Pipeline b80b0aaa2c98e92479885a65bfa8bd18 https://www.encodeproject.org/files/ENCFF560WHY/@@download/ENCFF560WHY.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF862SRI bed narrowPeak optimal idr thresholded peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF484TJY, ENCFF560WHY, ENCFF876JTC 350114 ENCODE Processing Pipeline 1c6811d4053f35decc7973fcf5f8f7b5 https://www.encodeproject.org/files/ENCFF862SRI/@@download/ENCFF862SRI.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF003OUL fastq reads ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 1 50 single-ended 1615663506 Richard Myers, HAIB 94f1ccf6e234829006630558bebd44e1 https://www.encodeproject.org/files/ENCFF003OUL/@@download/ENCFF003OUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF247MLF/ released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF390HDY fastq reads ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 1 50 single-ended 1547917981 Richard Myers, HAIB 5fc145d2ace8b2e2d1be92f0b6e7bd85 https://www.encodeproject.org/files/ENCFF390HDY/@@download/ENCFF390HDY.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF101CRH bigWig signal p-value ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF321UJV, ENCFF409VUE 709337502 ENCODE Processing Pipeline 791bd977ba59aa2ae86095ae5210bd2e https://www.encodeproject.org/files/ENCFF101CRH/@@download/ENCFF101CRH.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF027LPM bigWig signal p-value ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF428WCT, ENCFF871NUZ 602414531 ENCODE Processing Pipeline 51606e3cdf31391d3e090df8b9f450ad https://www.encodeproject.org/files/ENCFF027LPM/@@download/ENCFF027LPM.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF623GZK bigWig fold change over control ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF321UJV, ENCFF409VUE 632016551 ENCODE Processing Pipeline 70caa2372d0be47b60431190b4c50ca1 https://www.encodeproject.org/files/ENCFF623GZK/@@download/ENCFF623GZK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF803GSQ bigWig fold change over control ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF428WCT, ENCFF871NUZ 639318384 ENCODE Processing Pipeline e8590999f62546ba7ab966e4333ac1bd https://www.encodeproject.org/files/ENCFF803GSQ/@@download/ENCFF803GSQ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF205WQU bam unfiltered alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 50 ENCFF390HDY, ENCFF643CGH 1618720901 ENCODE Processing Pipeline 5da51154d53f190df6d9defab6d857a4 https://www.encodeproject.org/files/ENCFF205WQU/@@download/ENCFF205WQU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF967KLU bam unfiltered alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 50 ENCFF003OUL, ENCFF643CGH 1719033616 ENCODE Processing Pipeline 89421b380f27893ec9d90fdcab7276af https://www.encodeproject.org/files/ENCFF967KLU/@@download/ENCFF967KLU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF334WLO bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 50 ENCFF390HDY, ENCFF643CGH 1194271411 ENCODE Processing Pipeline dbe5b6d61f4ac9c3ec56f07235b9d521 https://www.encodeproject.org/files/ENCFF334WLO/@@download/ENCFF334WLO.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF761PTZ bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 50 ENCFF003OUL, ENCFF643CGH 1273941598 ENCODE Processing Pipeline a26c956b944751d0205ea2f2763506b8 https://www.encodeproject.org/files/ENCFF761PTZ/@@download/ENCFF761PTZ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF769OKK bigWig signal p-value ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF334WLO, ENCFF610PNU 577499816 ENCODE Processing Pipeline dfe966f1b4da53d396d9a5cc7a1a8b14 https://www.encodeproject.org/files/ENCFF769OKK/@@download/ENCFF769OKK.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF029JHT bigWig signal p-value ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF259AXY, ENCFF761PTZ 696372794 ENCODE Processing Pipeline af0d3509d72625fc9d6bc23e797f9e17 https://www.encodeproject.org/files/ENCFF029JHT/@@download/ENCFF029JHT.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF124SJD bigWig signal p-value ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF259AXY, ENCFF334WLO, ENCFF610PNU, ENCFF761PTZ 1018296849 ENCODE Processing Pipeline 8ec86a227aa85db74b2d31f041e436ef https://www.encodeproject.org/files/ENCFF124SJD/@@download/ENCFF124SJD.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF712IIB bigWig fold change over control ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF334WLO, ENCFF610PNU 632513157 ENCODE Processing Pipeline 35d8d94328fa46d350d8772a884cbd15 https://www.encodeproject.org/files/ENCFF712IIB/@@download/ENCFF712IIB.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF418ZKY bigWig fold change over control ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF259AXY, ENCFF761PTZ 630537261 ENCODE Processing Pipeline eff6b224a06e300ecb30f107d6c0da8e https://www.encodeproject.org/files/ENCFF418ZKY/@@download/ENCFF418ZKY.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF586QFS bigWig fold change over control ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF259AXY, ENCFF334WLO, ENCFF610PNU, ENCFF761PTZ 1270853692 ENCODE Processing Pipeline bb6a57220e444a08f6c4e3899c2a920c https://www.encodeproject.org/files/ENCFF586QFS/@@download/ENCFF586QFS.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF402FHN bigBed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF444TJW 13197865 ENCODE Processing Pipeline ba30cafabee880fdcd56713f4bee3418 https://www.encodeproject.org/files/ENCFF402FHN/@@download/ENCFF402FHN.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF444TJW bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF334WLO, ENCFF610PNU 6264268 ENCODE Processing Pipeline 319f6fb3796978f2183b4525db9597fe https://www.encodeproject.org/files/ENCFF444TJW/@@download/ENCFF444TJW.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF010FSB bigBed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF913EHI 13558029 ENCODE Processing Pipeline 8ff46d76ece266377ee54a5fc8131b15 https://www.encodeproject.org/files/ENCFF010FSB/@@download/ENCFF010FSB.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF609RFQ bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF259AXY, ENCFF761PTZ 5898792 ENCODE Processing Pipeline 545bafa70accdd8ad6e6132235b8678b https://www.encodeproject.org/files/ENCFF609RFQ/@@download/ENCFF609RFQ.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF913EHI bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF259AXY, ENCFF334WLO, ENCFF610PNU, ENCFF761PTZ 6795448 ENCODE Processing Pipeline 0a07359fa22c040fb61d9cd8672e1c7d https://www.encodeproject.org/files/ENCFF913EHI/@@download/ENCFF913EHI.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF102VCZ bigBed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF609RFQ 13357739 ENCODE Processing Pipeline 23fdb23236185f81ae2c8b4c9467a5d9 https://www.encodeproject.org/files/ENCFF102VCZ/@@download/ENCFF102VCZ.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF767DCV bigBed narrowPeak conservative idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF968WAS 1890564 ENCODE Processing Pipeline b603d4a0cbce5cdee2ad96af4391aec8 https://www.encodeproject.org/files/ENCFF767DCV/@@download/ENCFF767DCV.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF968WAS bed narrowPeak conservative idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF444TJW, ENCFF609RFQ, ENCFF913EHI 1038126 ENCODE Processing Pipeline ead0a5ee846d67a0aeec53cbc3084184 https://www.encodeproject.org/files/ENCFF968WAS/@@download/ENCFF968WAS.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF811TAO bigBed narrowPeak optimal idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF201KGJ 2075381 ENCODE Processing Pipeline 7d136bb7982cd4fdc887cf2740f4a831 https://www.encodeproject.org/files/ENCFF811TAO/@@download/ENCFF811TAO.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF201KGJ bed narrowPeak optimal idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF444TJW, ENCFF609RFQ, ENCFF913EHI 1166125 ENCODE Processing Pipeline 6d6a19926e8cbaf00b430f15a4dae76c https://www.encodeproject.org/files/ENCFF201KGJ/@@download/ENCFF201KGJ.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF583NVJ bam unfiltered alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 50 ENCFF390HDY, ENCFF807MUK 1612270233 ENCODE Processing Pipeline 01106c497b09df46955226b6579206d5 https://www.encodeproject.org/files/ENCFF583NVJ/@@download/ENCFF583NVJ.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF569XSF bam unfiltered alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 50 ENCFF003OUL, ENCFF807MUK 1712599958 ENCODE Processing Pipeline 7572b6e5e3a3e7f961d3169fe2c40f59 https://www.encodeproject.org/files/ENCFF569XSF/@@download/ENCFF569XSF.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF428WCT bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 50 ENCFF003OUL, ENCFF807MUK 1274117031 ENCODE Processing Pipeline 54d8ad1090f8da1deb7cc74e305eb0d1 https://www.encodeproject.org/files/ENCFF428WCT/@@download/ENCFF428WCT.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF409VUE bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 50 ENCFF390HDY, ENCFF807MUK 1194440872 ENCODE Processing Pipeline fe0fe568ed08004709ca0257e660bf49 https://www.encodeproject.org/files/ENCFF409VUE/@@download/ENCFF409VUE.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF255SKA bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF428WCT, ENCFF871NUZ 5910983 ENCODE Processing Pipeline 1a54775e476764cdb5f9af5bd2641d90 https://www.encodeproject.org/files/ENCFF255SKA/@@download/ENCFF255SKA.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF515RCQ bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF321UJV, ENCFF409VUE, ENCFF428WCT, ENCFF871NUZ 6926694 ENCODE Processing Pipeline c7c6ff453d35358b768efc101c0458a3 https://www.encodeproject.org/files/ENCFF515RCQ/@@download/ENCFF515RCQ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF727PJX bigBed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF255SKA 13364430 ENCODE Processing Pipeline 87792f53406c0a24e61e49511bfdc950 https://www.encodeproject.org/files/ENCFF727PJX/@@download/ENCFF727PJX.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF760CMQ bigWig signal p-value ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF321UJV, ENCFF409VUE, ENCFF428WCT, ENCFF871NUZ 1163942459 ENCODE Processing Pipeline 7e90b1b862f9c4878bf070ff194485ce https://www.encodeproject.org/files/ENCFF760CMQ/@@download/ENCFF760CMQ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF655LWO bigBed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF515RCQ 13713187 ENCODE Processing Pipeline 79712ca674aefb525d24b60c0ecbb843 https://www.encodeproject.org/files/ENCFF655LWO/@@download/ENCFF655LWO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF362WXS bigWig fold change over control ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF321UJV, ENCFF409VUE, ENCFF428WCT, ENCFF871NUZ 1285185649 ENCODE Processing Pipeline 6aba624e31febc1abd8663b0dc03b5c8 https://www.encodeproject.org/files/ENCFF362WXS/@@download/ENCFF362WXS.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF094URN bed narrowPeak conservative idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF183ZZZ, ENCFF255SKA, ENCFF515RCQ 1067042 ENCODE Processing Pipeline 20599b2277a7cfee5678207dd7a1276a https://www.encodeproject.org/files/ENCFF094URN/@@download/ENCFF094URN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF183ZZZ bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF321UJV, ENCFF409VUE 6281346 ENCODE Processing Pipeline df0168efb952e7c4434ea0f9c41b7a00 https://www.encodeproject.org/files/ENCFF183ZZZ/@@download/ENCFF183ZZZ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF570GHM bigBed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF183ZZZ 13213772 ENCODE Processing Pipeline f12bb1c15f3369f7b6087cf67eb3dd7e https://www.encodeproject.org/files/ENCFF570GHM/@@download/ENCFF570GHM.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF206FXU bigBed narrowPeak conservative idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF094URN 1939676 ENCODE Processing Pipeline d7f672fe5ea1dd86fdb510a511b224e1 https://www.encodeproject.org/files/ENCFF206FXU/@@download/ENCFF206FXU.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF189HPG bed narrowPeak optimal idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF183ZZZ, ENCFF255SKA, ENCFF515RCQ 1202043 ENCODE Processing Pipeline c170b33e7b6fce92b71adc330e097600 https://www.encodeproject.org/files/ENCFF189HPG/@@download/ENCFF189HPG.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF717ULT bigBed narrowPeak optimal idr thresholded peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF189HPG 2135892 ENCODE Processing Pipeline e1b641e453e7fc67302fcf6808e187f7 https://www.encodeproject.org/files/ENCFF717ULT/@@download/ENCFF717ULT.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF525YYN fastq reads ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1170896664 Bradley Bernstein, Broad 1435c80967a3f66a4123dfde1077e27a SRA:SRR5832869 https://www.encodeproject.org/files/ENCFF525YYN/@@download/ENCFF525YYN.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released low read depth ENCFF500QDP fastq reads ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1206466100 Bradley Bernstein, Broad f9830d59db8ced6fe08d74a6583ba637 SRA:SRR5832870 https://www.encodeproject.org/files/ENCFF500QDP/@@download/ENCFF500QDP.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released low read depth ENCFF343BMV bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF807MUK 1454315378 ENCODE Processing Pipeline 49cce5abb39d0f653364df42e3b58034 https://www.encodeproject.org/files/ENCFF343BMV/@@download/ENCFF343BMV.bam hg19 released low read depth ENCFF045BQI bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF643CGH 1460539127 ENCODE Processing Pipeline 5ba56bd3960d8032c360122495caa0e2 https://www.encodeproject.org/files/ENCFF045BQI/@@download/ENCFF045BQI.bam GRCh38 released low read depth ENCFF613DSA bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF807MUK 1162994412 ENCODE Processing Pipeline 22aea8c2a744ccdf99a0173ee4c10e43 https://www.encodeproject.org/files/ENCFF613DSA/@@download/ENCFF613DSA.bam hg19 released low read depth ENCFF226SIV bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF643CGH 1438001316 ENCODE Processing Pipeline b6bf3d3f9ead48f3b2ff7f56928fbafa https://www.encodeproject.org/files/ENCFF226SIV/@@download/ENCFF226SIV.bam GRCh38 released low read depth ENCFF279FXW bam unfiltered alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF807MUK 1430859609 ENCODE Processing Pipeline 1c5eed3b5440b8cb967516e08ec4903d https://www.encodeproject.org/files/ENCFF279FXW/@@download/ENCFF279FXW.bam hg19 released low read depth ENCFF891QYX bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF643CGH 1111303265 ENCODE Processing Pipeline de8403dcb4e07d5e59e0ed83dffad87b https://www.encodeproject.org/files/ENCFF891QYX/@@download/ENCFF891QYX.bam GRCh38 released low read depth ENCFF814XON bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF643CGH 1166104741 ENCODE Processing Pipeline d52737598171775eb1be1c42478a40b1 https://www.encodeproject.org/files/ENCFF814XON/@@download/ENCFF814XON.bam GRCh38 released low read depth ENCFF177HNF bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF807MUK 1107658291 ENCODE Processing Pipeline 4605f4ec232fcd8ef5434af6d7d491b9 https://www.encodeproject.org/files/ENCFF177HNF/@@download/ENCFF177HNF.bam hg19 released low read depth ENCFF726SNR bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 1012307624 ENCODE Processing Pipeline b8b24fcedf88b2e1c7858e00a67fa76e https://www.encodeproject.org/files/ENCFF726SNR/@@download/ENCFF726SNR.bigWig hg19 released low read depth ENCFF685NUU bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 6315866 ENCODE Processing Pipeline e2c7d4c65e357d207437d90dd53fb2c5 https://www.encodeproject.org/files/ENCFF685NUU/@@download/ENCFF685NUU.bed.gz hg19 released low read depth ENCFF069WNS bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 6147376 ENCODE Processing Pipeline b3f11d9c60d051d52eb429f9cfe1601e https://www.encodeproject.org/files/ENCFF069WNS/@@download/ENCFF069WNS.bed.gz hg19 released low read depth ENCFF885FOW bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF685NUU 13308947 ENCODE Processing Pipeline 53eb18e68b18067205e0ce095d281176 https://www.encodeproject.org/files/ENCFF885FOW/@@download/ENCFF885FOW.bigBed hg19 released low read depth ENCFF216FFS bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF069WNS 13412297 ENCODE Processing Pipeline a58fb77ec4cb7190f4f951733988d940 https://www.encodeproject.org/files/ENCFF216FFS/@@download/ENCFF216FFS.bigBed hg19 released low read depth ENCFF607ZXG bed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF069WNS, ENCFF685NUU, ENCFF981HQF 8382 ENCODE Processing Pipeline a88337e976aeb447418fa97d35b40024 https://www.encodeproject.org/files/ENCFF607ZXG/@@download/ENCFF607ZXG.bed.gz hg19 released low read depth ENCFF417OFX bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF052CIJ 13372889 ENCODE Processing Pipeline 4a7d455bb96e6f1a1af827127b5fe74c https://www.encodeproject.org/files/ENCFF417OFX/@@download/ENCFF417OFX.bigBed GRCh38 released low read depth ENCFF606YYB bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF891QYX 6172805 ENCODE Processing Pipeline 22ae1ae22ae8219e0a192585d48e58ad https://www.encodeproject.org/files/ENCFF606YYB/@@download/ENCFF606YYB.bed.gz GRCh38 released low read depth ENCFF088EDZ bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF981HQF 13216659 ENCODE Processing Pipeline 7e34d99e3c4734d6e244b0755fce3dec https://www.encodeproject.org/files/ENCFF088EDZ/@@download/ENCFF088EDZ.bigBed hg19 released low read depth ENCFF124KYF bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 957998615 ENCODE Processing Pipeline d0f9f84ac5b8c746c16da143d0c5b4b0 https://www.encodeproject.org/files/ENCFF124KYF/@@download/ENCFF124KYF.bigWig hg19 released low read depth ENCFF453WUG bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 847524936 ENCODE Processing Pipeline dbb3a494a46b2683a38333d1d9ba8194 https://www.encodeproject.org/files/ENCFF453WUG/@@download/ENCFF453WUG.bigWig hg19 released low read depth ENCFF220BSP bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF891QYX 882015840 ENCODE Processing Pipeline dba8df950f6d4ad772a44f09fc88d09d https://www.encodeproject.org/files/ENCFF220BSP/@@download/ENCFF220BSP.bigWig GRCh38 released low read depth ENCFF981HQF bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177HNF, ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 6929774 ENCODE Processing Pipeline 4927ba7e397bdabff25014eb91551508 https://www.encodeproject.org/files/ENCFF981HQF/@@download/ENCFF981HQF.bed.gz hg19 released low read depth ENCFF052CIJ bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON, ENCFF891QYX 6780627 ENCODE Processing Pipeline 4df82676d5b65115d82e0cc18a27602d https://www.encodeproject.org/files/ENCFF052CIJ/@@download/ENCFF052CIJ.bed.gz GRCh38 released low read depth ENCFF141LEI bed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF069WNS, ENCFF685NUU, ENCFF981HQF 8524 ENCODE Processing Pipeline 58281cd2d3fdcbce6474dcc7abc61e32 https://www.encodeproject.org/files/ENCFF141LEI/@@download/ENCFF141LEI.bed.gz hg19 released low read depth ENCFF930BKB bigBed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF552QOA 108474 ENCODE Processing Pipeline ff7255d33a5156eaed437c694886fd38 https://www.encodeproject.org/files/ENCFF930BKB/@@download/ENCFF930BKB.bigBed GRCh38 released low read depth ENCFF094MGE bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON, ENCFF891QYX 1159558624 ENCODE Processing Pipeline 9f4939130347faf09d1856682ded3ecb https://www.encodeproject.org/files/ENCFF094MGE/@@download/ENCFF094MGE.bigWig GRCh38 released low read depth ENCFF290KWW bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF891QYX 932029198 ENCODE Processing Pipeline 88b61caff12fbccf71c4d3ea1f4d5da7 https://www.encodeproject.org/files/ENCFF290KWW/@@download/ENCFF290KWW.bigWig GRCh38 released low read depth ENCFF643WKY bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON 978954812 ENCODE Processing Pipeline 740d13b6b790d36ad9b7dfcce1073f6e https://www.encodeproject.org/files/ENCFF643WKY/@@download/ENCFF643WKY.bigWig GRCh38 released low read depth ENCFF741ZGT bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON, ENCFF891QYX 1300031515 ENCODE Processing Pipeline 6cafabf9307043089fa99358c54de318 https://www.encodeproject.org/files/ENCFF741ZGT/@@download/ENCFF741ZGT.bigWig GRCh38 released low read depth ENCFF732LWT bigBed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF607ZXG 101627 ENCODE Processing Pipeline b57a11b503f9e5b730c8184097a24d83 https://www.encodeproject.org/files/ENCFF732LWT/@@download/ENCFF732LWT.bigBed hg19 released low read depth ENCFF269CTS bigWig signal p-value ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177HNF, ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 1141085169 ENCODE Processing Pipeline 098589aeb183a780153a5d91249888eb https://www.encodeproject.org/files/ENCFF269CTS/@@download/ENCFF269CTS.bigWig hg19 released low read depth ENCFF613JTE bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 909517178 ENCODE Processing Pipeline e3241218f8a320c76dd4978b0203a179 https://www.encodeproject.org/files/ENCFF613JTE/@@download/ENCFF613JTE.bigWig hg19 released low read depth ENCFF771KTX bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON 870028969 ENCODE Processing Pipeline a279a2457f2f83de1ba116fcc4397336 https://www.encodeproject.org/files/ENCFF771KTX/@@download/ENCFF771KTX.bigWig GRCh38 released low read depth ENCFF560MPE bigWig fold change over control ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177HNF, ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 1287905756 ENCODE Processing Pipeline 478abd43c577b6ce40786a07fe9ce972 https://www.encodeproject.org/files/ENCFF560MPE/@@download/ENCFF560MPE.bigWig hg19 released low read depth ENCFF815EXW bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF814XON 5956561 ENCODE Processing Pipeline 6ef45f0cdca1d314d213a89065752f4d https://www.encodeproject.org/files/ENCFF815EXW/@@download/ENCFF815EXW.bed.gz GRCh38 released low read depth ENCFF657PLX bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF606YYB 13410176 ENCODE Processing Pipeline 2973e625de3c051eb4fb133ce2d15228 https://www.encodeproject.org/files/ENCFF657PLX/@@download/ENCFF657PLX.bigBed GRCh38 released low read depth ENCFF437FDH bigBed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF141LEI 101585 ENCODE Processing Pipeline 1c21d75251c608fe5990d69cabb16557 https://www.encodeproject.org/files/ENCFF437FDH/@@download/ENCFF437FDH.bigBed hg19 released low read depth ENCFF994CDG bigBed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF815EXW 13510923 ENCODE Processing Pipeline d51d0a756588c35fbdf03796501a09c9 https://www.encodeproject.org/files/ENCFF994CDG/@@download/ENCFF994CDG.bigBed GRCh38 released low read depth ENCFF507WQJ bed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF052CIJ, ENCFF419RSJ, ENCFF606YYB, ENCFF815EXW 8328 ENCODE Processing Pipeline b236d118244fdf5629d1108fc6ddd034 https://www.encodeproject.org/files/ENCFF507WQJ/@@download/ENCFF507WQJ.bed.gz GRCh38 released low read depth ENCFF552QOA bed narrowPeak optimal idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF052CIJ, ENCFF419RSJ, ENCFF606YYB, ENCFF815EXW 9613 ENCODE Processing Pipeline 308262f6f3c2a771c64553ce3028969e https://www.encodeproject.org/files/ENCFF552QOA/@@download/ENCFF552QOA.bed.gz GRCh38 released low read depth ENCFF452WYE bigBed narrowPeak conservative idr thresholded peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF507WQJ 105141 ENCODE Processing Pipeline 9d013b3a95d3c7d284949eae5be59861 https://www.encodeproject.org/files/ENCFF452WYE/@@download/ENCFF452WYE.bigBed GRCh38 released low read depth ENCFF121YCH fastq reads ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 1 100 paired-ended 2 ENCFF950ZNN 2908274485 Michael Snyder, Stanford f44ca355a3c32afbb5b42fe2028b2db2 SRA:SRR6214329 https://www.encodeproject.org/files/ENCFF121YCH/@@download/ENCFF121YCH.fastq.gz Illumina HiSeq 4000 /files/ENCFF401JOM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF950ZNN fastq reads ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 1 100 paired-ended 1 ENCFF121YCH 2442095425 Michael Snyder, Stanford 27c802a2957affc90310cecf8f03170a SRA:SRR6214329 https://www.encodeproject.org/files/ENCFF950ZNN/@@download/ENCFF950ZNN.fastq.gz Illumina HiSeq 4000 /files/ENCFF630VPV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF364HTM bam alignments ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 100 ENCFF121YCH, ENCFF643CGH, ENCFF950ZNN 2994402378 ENCODE Processing Pipeline 93e6da5441393fdce1e87ba3fc4c6f8e https://www.encodeproject.org/files/ENCFF364HTM/@@download/ENCFF364HTM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF065PCE bam unfiltered alignments ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 100 ENCFF121YCH, ENCFF643CGH, ENCFF950ZNN 4761067702 ENCODE Processing Pipeline 37a42a555d926576fc5cd090f44ae3b1 https://www.encodeproject.org/files/ENCFF065PCE/@@download/ENCFF065PCE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF938TBK bam unfiltered alignments ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 100 ENCFF121YCH, ENCFF807MUK, ENCFF950ZNN 4757688739 ENCODE Processing Pipeline 4ae47aee24ad71ea5230830ce24872c0 https://www.encodeproject.org/files/ENCFF938TBK/@@download/ENCFF938TBK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF950BSF bam alignments ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 100 ENCFF121YCH, ENCFF807MUK, ENCFF950ZNN 2989437637 ENCODE Processing Pipeline 1a96f506adb2fd18416270925779eda0 https://www.encodeproject.org/files/ENCFF950BSF/@@download/ENCFF950BSF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF782XKI bigWig signal p-value ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF004MGP, ENCFF950BSF 877860148 ENCODE Processing Pipeline 7a6faf8e0d0b234f341a0a67a5ae904a https://www.encodeproject.org/files/ENCFF782XKI/@@download/ENCFF782XKI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF101PDP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF001TDO, ENCFF693ETV 396511 ENCODE Processing Pipeline 3e321488d5af15c415b932c9c969b2e1 https://www.encodeproject.org/files/ENCFF101PDP/@@download/ENCFF101PDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF849XXE bigWig fold change over control ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF004MGP, ENCFF950BSF 1044842633 ENCODE Processing Pipeline 333a2b01fcd96dcd833515c8344dc8c0 https://www.encodeproject.org/files/ENCFF849XXE/@@download/ENCFF849XXE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF770OUZ bigBed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF693ETV 11599270 ENCODE Processing Pipeline cf0f2b09ffbc273e71100e7d2598242e https://www.encodeproject.org/files/ENCFF770OUZ/@@download/ENCFF770OUZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF693ETV bed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF004MGP, ENCFF950BSF 5946564 ENCODE Processing Pipeline 8eeb8e9ed18535d626ef61e81c346fd9 https://www.encodeproject.org/files/ENCFF693ETV/@@download/ENCFF693ETV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF347XGD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF101PDP 755526 ENCODE Processing Pipeline defb388cc6d07af61a07f05767e595ef https://www.encodeproject.org/files/ENCFF347XGD/@@download/ENCFF347XGD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF372MFG bigWig signal p-value ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF364HTM, ENCFF863CTX 996043133 ENCODE Processing Pipeline 41a18889696f1d78b1417f2aff0e5be2 https://www.encodeproject.org/files/ENCFF372MFG/@@download/ENCFF372MFG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF281XHU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF419RSJ, ENCFF587UBP 386519 ENCODE Processing Pipeline 4e43fd7d51aeed90b1add774ad1c2f6a https://www.encodeproject.org/files/ENCFF281XHU/@@download/ENCFF281XHU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF378VTL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF281XHU 744843 ENCODE Processing Pipeline a4ebbf9cb2d73d30c2d284a32d98d381 https://www.encodeproject.org/files/ENCFF378VTL/@@download/ENCFF378VTL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF587UBP bed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF364HTM, ENCFF863CTX 5913190 ENCODE Processing Pipeline 137f47cddc0ad49dee3fc48d2e297f5c https://www.encodeproject.org/files/ENCFF587UBP/@@download/ENCFF587UBP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF369BRW bigBed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF587UBP 11574228 ENCODE Processing Pipeline b22e1005c827174ab25ec5889f18a28e https://www.encodeproject.org/files/ENCFF369BRW/@@download/ENCFF369BRW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF211PSD bigWig fold change over control ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF364HTM, ENCFF863CTX 1069854558 ENCODE Processing Pipeline 5814e4bd72327443fd6e9a2c99ae4ed7 https://www.encodeproject.org/files/ENCFF211PSD/@@download/ENCFF211PSD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF078GUJ bam unfiltered alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 100 ENCFF543AIK, ENCFF807MUK, ENCFF865YPR 5865134556 ENCODE Processing Pipeline e5213107db3a30ef7eca8e6fbc18ed10 https://www.encodeproject.org/files/ENCFF078GUJ/@@download/ENCFF078GUJ.bam hg19 released antibody characterized with exemption ENCFF741AHG bam unfiltered alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 100 ENCFF730YIK, ENCFF807MUK, ENCFF861REO 4629897289 ENCODE Processing Pipeline bf15f05d1756008e34b4712aebf8b7b1 https://www.encodeproject.org/files/ENCFF741AHG/@@download/ENCFF741AHG.bam hg19 released antibody characterized with exemption ENCFF861REO fastq reads ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF730YIK 2089298482 Michael Snyder, Stanford 0cf5b060af1fa08daa2e34f5ccbec898 SRA:SRR6214381 https://www.encodeproject.org/files/ENCFF861REO/@@download/ENCFF861REO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption ENCFF730YIK fastq reads ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF861REO 2050637005 Michael Snyder, Stanford c2a0191943fb8c8539918c3a47973a5f SRA:SRR6214381 https://www.encodeproject.org/files/ENCFF730YIK/@@download/ENCFF730YIK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption ENCFF865YPR fastq reads ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF543AIK 2676109101 Michael Snyder, Stanford fcff60fa9c5f104a7ecc9866ce497c38 SRA:SRR6214380 https://www.encodeproject.org/files/ENCFF865YPR/@@download/ENCFF865YPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption ENCFF543AIK fastq reads ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF865YPR 2693104827 Michael Snyder, Stanford 2bfe32457461047d548f4caa08c21b62 SRA:SRR6214380 https://www.encodeproject.org/files/ENCFF543AIK/@@download/ENCFF543AIK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption ENCFF829QRY bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 100 ENCFF543AIK, ENCFF807MUK, ENCFF865YPR 4458037781 ENCODE Processing Pipeline 6acfb72aca06bbc627a05904ffa2b4a3 https://www.encodeproject.org/files/ENCFF829QRY/@@download/ENCFF829QRY.bam hg19 released antibody characterized with exemption ENCFF448ALJ bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 100 ENCFF730YIK, ENCFF807MUK, ENCFF861REO 4029251972 ENCODE Processing Pipeline c242c39d56d66a3101990689f44302dd https://www.encodeproject.org/files/ENCFF448ALJ/@@download/ENCFF448ALJ.bam hg19 released antibody characterized with exemption ENCFF006HJJ bigWig signal p-value ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF581ZJL, ENCFF829QRY 1192790733 ENCODE Processing Pipeline 89295be3e92ea548a0d8fa230935022c https://www.encodeproject.org/files/ENCFF006HJJ/@@download/ENCFF006HJJ.bigWig hg19 released antibody characterized with exemption ENCFF460DDB bigWig signal p-value ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF448ALJ 1091149459 ENCODE Processing Pipeline f347394102b0f5cd3a552e02bf168114 https://www.encodeproject.org/files/ENCFF460DDB/@@download/ENCFF460DDB.bigWig hg19 released antibody characterized with exemption ENCFF480MGF bigWig signal p-value ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF448ALJ, ENCFF581ZJL, ENCFF829QRY 1656280674 ENCODE Processing Pipeline f0654073fcb14c95d235cf9d0d41bb02 https://www.encodeproject.org/files/ENCFF480MGF/@@download/ENCFF480MGF.bigWig hg19 released antibody characterized with exemption ENCFF872UVV bigWig fold change over control ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF581ZJL, ENCFF829QRY 1200578597 ENCODE Processing Pipeline ceadaf69b4647088bef749cb6ec14089 https://www.encodeproject.org/files/ENCFF872UVV/@@download/ENCFF872UVV.bigWig hg19 released antibody characterized with exemption ENCFF022WST bigWig fold change over control ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF448ALJ 1117788025 ENCODE Processing Pipeline 4d6b5f3ee16c83303cf7ba7358794650 https://www.encodeproject.org/files/ENCFF022WST/@@download/ENCFF022WST.bigWig hg19 released antibody characterized with exemption ENCFF477PQL bigWig fold change over control ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF448ALJ, ENCFF581ZJL, ENCFF829QRY 2092412548 ENCODE Processing Pipeline 457f123bd3a4e94d0ade3c741992a4d9 https://www.encodeproject.org/files/ENCFF477PQL/@@download/ENCFF477PQL.bigWig hg19 released antibody characterized with exemption ENCFF477OXP bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF581ZJL, ENCFF829QRY 6484621 ENCODE Processing Pipeline fa90de3cfac4674edf9523388e31ccf6 https://www.encodeproject.org/files/ENCFF477OXP/@@download/ENCFF477OXP.bed.gz hg19 released antibody characterized with exemption ENCFF813QIG bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF448ALJ 6696456 ENCODE Processing Pipeline d3770d1cb49701c8897d34afc573b6a5 https://www.encodeproject.org/files/ENCFF813QIG/@@download/ENCFF813QIG.bed.gz hg19 released antibody characterized with exemption ENCFF131NLL bigBed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF477OXP 11280092 ENCODE Processing Pipeline 9b5289d02a8208a118cc3cd75a38c0b0 https://www.encodeproject.org/files/ENCFF131NLL/@@download/ENCFF131NLL.bigBed hg19 released antibody characterized with exemption ENCFF901ECC bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF448ALJ, ENCFF581ZJL, ENCFF829QRY 7165546 ENCODE Processing Pipeline 8a0ea8c96fbe0c65f8266674e4eee47b https://www.encodeproject.org/files/ENCFF901ECC/@@download/ENCFF901ECC.bed.gz hg19 released antibody characterized with exemption ENCFF417QSI bigBed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF813QIG 13233150 ENCODE Processing Pipeline b2244b6cd32888ae84b59e1b762cd51c https://www.encodeproject.org/files/ENCFF417QSI/@@download/ENCFF417QSI.bigBed hg19 released antibody characterized with exemption ENCFF033FPI bigBed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF901ECC 13243727 ENCODE Processing Pipeline 0dd740249643dd8d6d96d10ced5d7a3c https://www.encodeproject.org/files/ENCFF033FPI/@@download/ENCFF033FPI.bigBed hg19 released antibody characterized with exemption ENCFF654HDK bed narrowPeak conservative idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF477OXP, ENCFF813QIG, ENCFF901ECC 58257 ENCODE Processing Pipeline b4fcb2c12b95f2acee1f9859e70dc1bc https://www.encodeproject.org/files/ENCFF654HDK/@@download/ENCFF654HDK.bed.gz hg19 released antibody characterized with exemption ENCFF105WGB bigBed narrowPeak conservative idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF654HDK 173023 ENCODE Processing Pipeline 0b0f4254ea3202fe8004eb5589d2288a https://www.encodeproject.org/files/ENCFF105WGB/@@download/ENCFF105WGB.bigBed hg19 released antibody characterized with exemption ENCFF539AFY bigBed narrowPeak optimal idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF359QCN 229284 ENCODE Processing Pipeline 9166841a969cee8ec38ee0b88761f780 https://www.encodeproject.org/files/ENCFF539AFY/@@download/ENCFF539AFY.bigBed hg19 released antibody characterized with exemption ENCFF359QCN bed narrowPeak optimal idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF477OXP, ENCFF813QIG, ENCFF901ECC 93421 ENCODE Processing Pipeline 7d36f0239138fa8ed42599cdb4431be9 https://www.encodeproject.org/files/ENCFF359QCN/@@download/ENCFF359QCN.bed.gz hg19 released antibody characterized with exemption ENCFF934QDZ bam unfiltered alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 100 ENCFF643CGH, ENCFF730YIK, ENCFF861REO 4635618779 ENCODE Processing Pipeline 1248f2a030389594e29525023e2d2e73 https://www.encodeproject.org/files/ENCFF934QDZ/@@download/ENCFF934QDZ.bam GRCh38 released antibody characterized with exemption ENCFF248KAG bam unfiltered alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 100 ENCFF543AIK, ENCFF643CGH, ENCFF865YPR 5873452277 ENCODE Processing Pipeline 214b21724057796c1492cfb9dabc751d https://www.encodeproject.org/files/ENCFF248KAG/@@download/ENCFF248KAG.bam GRCh38 released antibody characterized with exemption ENCFF329MCT bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 100 ENCFF643CGH, ENCFF730YIK, ENCFF861REO 4033853337 ENCODE Processing Pipeline a95dead3fb5a999719e2d352db197f83 https://www.encodeproject.org/files/ENCFF329MCT/@@download/ENCFF329MCT.bam GRCh38 released antibody characterized with exemption ENCFF872TUO bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 100 ENCFF543AIK, ENCFF643CGH, ENCFF865YPR 4464825655 ENCODE Processing Pipeline c17bc1635ed0701191c267a011d302fc https://www.encodeproject.org/files/ENCFF872TUO/@@download/ENCFF872TUO.bam GRCh38 released antibody characterized with exemption ENCFF211SZA bigWig signal p-value ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF872TUO, ENCFF910IKB 1065106526 ENCODE Processing Pipeline 91163111672ec23ff85987689bac875f https://www.encodeproject.org/files/ENCFF211SZA/@@download/ENCFF211SZA.bigWig GRCh38 released antibody characterized with exemption ENCFF102OPR bigWig signal p-value ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF227IZS, ENCFF329MCT 991169521 ENCODE Processing Pipeline fbdab7ce89b1d72e782938af8cb5fefc https://www.encodeproject.org/files/ENCFF102OPR/@@download/ENCFF102OPR.bigWig GRCh38 released antibody characterized with exemption ENCFF691ZSY bigWig signal p-value ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF329MCT, ENCFF872TUO, ENCFF910IKB 1757976492 ENCODE Processing Pipeline c8eb24134b6fa82eb6a0fbb4be08a310 https://www.encodeproject.org/files/ENCFF691ZSY/@@download/ENCFF691ZSY.bigWig GRCh38 released antibody characterized with exemption ENCFF799OFC bigWig fold change over control ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF872TUO, ENCFF910IKB 1203622962 ENCODE Processing Pipeline 991dedd74405694ba896976a44fdf79e https://www.encodeproject.org/files/ENCFF799OFC/@@download/ENCFF799OFC.bigWig GRCh38 released antibody characterized with exemption ENCFF317AXA bigWig fold change over control ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF227IZS, ENCFF329MCT 1099242435 ENCODE Processing Pipeline e75199a15dc51a20c29009f3ea57c281 https://www.encodeproject.org/files/ENCFF317AXA/@@download/ENCFF317AXA.bigWig GRCh38 released antibody characterized with exemption ENCFF893QJX bigWig fold change over control ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF329MCT, ENCFF872TUO, ENCFF910IKB 2061294245 ENCODE Processing Pipeline 8be213e61bb0ce76044af10a69e96193 https://www.encodeproject.org/files/ENCFF893QJX/@@download/ENCFF893QJX.bigWig GRCh38 released antibody characterized with exemption ENCFF142EFY bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF227IZS, ENCFF329MCT 6560830 ENCODE Processing Pipeline ac6e89e4ff8fd9c139b9df30dfe89edc https://www.encodeproject.org/files/ENCFF142EFY/@@download/ENCFF142EFY.bed.gz GRCh38 released antibody characterized with exemption ENCFF411IUW bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF872TUO, ENCFF910IKB 6323418 ENCODE Processing Pipeline cf68f881d8de37a9053d12a74694ae82 https://www.encodeproject.org/files/ENCFF411IUW/@@download/ENCFF411IUW.bed.gz GRCh38 released antibody characterized with exemption ENCFF935TEH bigBed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF142EFY 13242784 ENCODE Processing Pipeline 3154c0e3422d4bd7bcd3a8258e05e8d0 https://www.encodeproject.org/files/ENCFF935TEH/@@download/ENCFF935TEH.bigBed GRCh38 released antibody characterized with exemption ENCFF816QIM bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF329MCT, ENCFF872TUO, ENCFF910IKB 7144183 ENCODE Processing Pipeline cd14709fa040c1c160eeec94b83756d1 https://www.encodeproject.org/files/ENCFF816QIM/@@download/ENCFF816QIM.bed.gz GRCh38 released antibody characterized with exemption ENCFF858ZEL bigBed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF411IUW 11292455 ENCODE Processing Pipeline cf2227c25c68798144123e6f6105928d https://www.encodeproject.org/files/ENCFF858ZEL/@@download/ENCFF858ZEL.bigBed GRCh38 released antibody characterized with exemption ENCFF498TJW bed narrowPeak conservative idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF142EFY, ENCFF411IUW, ENCFF419RSJ, ENCFF816QIM 58180 ENCODE Processing Pipeline c9399bddbfba6ecc36bfbfe666d708f6 https://www.encodeproject.org/files/ENCFF498TJW/@@download/ENCFF498TJW.bed.gz GRCh38 released antibody characterized with exemption ENCFF466KJM bigBed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF816QIM 13258207 ENCODE Processing Pipeline f3307f12c79057b83e69a618d3bde5fa https://www.encodeproject.org/files/ENCFF466KJM/@@download/ENCFF466KJM.bigBed GRCh38 released antibody characterized with exemption ENCFF145JVG bigBed narrowPeak optimal idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF813GMP 235530 ENCODE Processing Pipeline 25258f076e362be309636531a68fe36a https://www.encodeproject.org/files/ENCFF145JVG/@@download/ENCFF145JVG.bigBed GRCh38 released antibody characterized with exemption ENCFF544IUD bigBed narrowPeak conservative idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF498TJW 174717 ENCODE Processing Pipeline a2e4772f8b42a74104104dca3caabba9 https://www.encodeproject.org/files/ENCFF544IUD/@@download/ENCFF544IUD.bigBed GRCh38 released antibody characterized with exemption ENCFF813GMP bed narrowPeak optimal idr thresholded peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF142EFY, ENCFF411IUW, ENCFF419RSJ, ENCFF816QIM 95815 ENCODE Processing Pipeline 44c6a9971bc71fb862edde8496ee3c36 https://www.encodeproject.org/files/ENCFF813GMP/@@download/ENCFF813GMP.bed.gz GRCh38 released antibody characterized with exemption ENCFF454EYI fastq reads ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1376902784 Richard Myers, HAIB d1ff1485eb48deb9f783ca24bf473aea SRA:SRR5331226 https://www.encodeproject.org/files/ENCFF454EYI/@@download/ENCFF454EYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF536LRX/ released borderline replicate concordance, low read depth ENCFF232WOY fastq reads ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1637161467 Richard Myers, HAIB 407f64cfd22a776e0c230f373c2e27fe SRA:SRR5331227 https://www.encodeproject.org/files/ENCFF232WOY/@@download/ENCFF232WOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF913JVQ/ released borderline replicate concordance, low read depth ENCFF107VJA bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 50 ENCFF232WOY, ENCFF807MUK 1310208680 ENCODE Processing Pipeline 25779f740041eb74083d794af4963c63 https://www.encodeproject.org/files/ENCFF107VJA/@@download/ENCFF107VJA.bam hg19 released borderline replicate concordance, low read depth ENCFF708IYO bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 50 ENCFF454EYI, ENCFF807MUK 1165039842 ENCODE Processing Pipeline 1933f2cc439827f690a6bc477d4b6cbf https://www.encodeproject.org/files/ENCFF708IYO/@@download/ENCFF708IYO.bam hg19 released borderline replicate concordance, low read depth ENCFF877DYM bam unfiltered alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 50 ENCFF454EYI, ENCFF643CGH 1503195194 ENCODE Processing Pipeline 6495391c3d1c9c47a3f8477728f8ca19 https://www.encodeproject.org/files/ENCFF877DYM/@@download/ENCFF877DYM.bam GRCh38 released borderline replicate concordance, low read depth ENCFF468FPM bam unfiltered alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 50 ENCFF232WOY, ENCFF643CGH 1758259023 ENCODE Processing Pipeline 5c72be1533bf4f12afb0197841c10fb6 https://www.encodeproject.org/files/ENCFF468FPM/@@download/ENCFF468FPM.bam GRCh38 released borderline replicate concordance, low read depth ENCFF719XQY bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 50 ENCFF454EYI, ENCFF643CGH 1164666225 ENCODE Processing Pipeline 0ee35c3100317ca2d4f4748598942809 https://www.encodeproject.org/files/ENCFF719XQY/@@download/ENCFF719XQY.bam GRCh38 released borderline replicate concordance, low read depth ENCFF544DDY bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 50 ENCFF232WOY, ENCFF643CGH 1309680764 ENCODE Processing Pipeline 006db9dee42877afdf16dce0c20a5efc https://www.encodeproject.org/files/ENCFF544DDY/@@download/ENCFF544DDY.bam GRCh38 released borderline replicate concordance, low read depth ENCFF660KID bigWig signal p-value ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF162ZOO, ENCFF544DDY 713062287 ENCODE Processing Pipeline 646c92d7ced7c03f98fa8450add1e5a6 https://www.encodeproject.org/files/ENCFF660KID/@@download/ENCFF660KID.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF630SVO bigWig signal p-value ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF719XQY, ENCFF968UFH 671202614 ENCODE Processing Pipeline 13ec3fc56f0b0e2c836cb8560204f0ef https://www.encodeproject.org/files/ENCFF630SVO/@@download/ENCFF630SVO.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF838LIQ bigWig signal p-value ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF162ZOO, ENCFF544DDY, ENCFF719XQY, ENCFF968UFH 1277192286 ENCODE Processing Pipeline 47118af05c49be50cffb73b92a19b895 https://www.encodeproject.org/files/ENCFF838LIQ/@@download/ENCFF838LIQ.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF418YSU bigWig fold change over control ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF162ZOO, ENCFF544DDY 596529877 ENCODE Processing Pipeline 9976ff88988dccd597a70424655ab239 https://www.encodeproject.org/files/ENCFF418YSU/@@download/ENCFF418YSU.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF219VGB bigWig fold change over control ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF719XQY, ENCFF968UFH 550379277 ENCODE Processing Pipeline fa82f6e5070b42f2e649e7286cb8b658 https://www.encodeproject.org/files/ENCFF219VGB/@@download/ENCFF219VGB.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF657DIW bigWig fold change over control ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF162ZOO, ENCFF544DDY, ENCFF719XQY, ENCFF968UFH 1209509430 ENCODE Processing Pipeline 1b4728345f0b03c1f513ac47d409cb98 https://www.encodeproject.org/files/ENCFF657DIW/@@download/ENCFF657DIW.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF718ZLW bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF719XQY, ENCFF968UFH 5768360 ENCODE Processing Pipeline f1f68f95d037e8c649e5ad40f57950a8 https://www.encodeproject.org/files/ENCFF718ZLW/@@download/ENCFF718ZLW.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF243IIV bigBed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF718ZLW 13166722 ENCODE Processing Pipeline 0189c8528767f2fc61a2f1fc1591a651 https://www.encodeproject.org/files/ENCFF243IIV/@@download/ENCFF243IIV.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF070FHF bigBed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF515RUZ 13076381 ENCODE Processing Pipeline 52e6abc6aa0fb9d6affb7ba5d1842c3b https://www.encodeproject.org/files/ENCFF070FHF/@@download/ENCFF070FHF.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF105RJJ bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF162ZOO, ENCFF544DDY, ENCFF719XQY, ENCFF968UFH 7003878 ENCODE Processing Pipeline dce07d13585a7349b2ed2cb6584240cc https://www.encodeproject.org/files/ENCFF105RJJ/@@download/ENCFF105RJJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF515RUZ bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF162ZOO, ENCFF544DDY 6431040 ENCODE Processing Pipeline 0c755a6f2bb9135aa0a3421567c13e9c https://www.encodeproject.org/files/ENCFF515RUZ/@@download/ENCFF515RUZ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF290BTM bigBed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF105RJJ 13238850 ENCODE Processing Pipeline fd59222eea71e6ce1a4bb98c515e013f https://www.encodeproject.org/files/ENCFF290BTM/@@download/ENCFF290BTM.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF402SQA bigBed narrowPeak conservative idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF666MKU 349005 ENCODE Processing Pipeline 02ede845629758f3e3c42ed8955903de https://www.encodeproject.org/files/ENCFF402SQA/@@download/ENCFF402SQA.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF666MKU bed narrowPeak conservative idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF105RJJ, ENCFF419RSJ, ENCFF515RUZ, ENCFF718ZLW 165150 ENCODE Processing Pipeline dfec03e4332932d52d1345a1eec18895 https://www.encodeproject.org/files/ENCFF666MKU/@@download/ENCFF666MKU.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF309AID bigBed narrowPeak optimal idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF741CLJ 655348 ENCODE Processing Pipeline cda00ad0694c70f66bdd406bafa3a0d2 https://www.encodeproject.org/files/ENCFF309AID/@@download/ENCFF309AID.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF741CLJ bed narrowPeak optimal idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF105RJJ, ENCFF419RSJ, ENCFF515RUZ, ENCFF718ZLW 303753 ENCODE Processing Pipeline fd614180ded8d33a00c702f5fc83e723 https://www.encodeproject.org/files/ENCFF741CLJ/@@download/ENCFF741CLJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF789KSW bam unfiltered alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 50 ENCFF232WOY, ENCFF807MUK 1752580791 ENCODE Processing Pipeline 5a00ddc82303eaa60cd1e64f123e8547 https://www.encodeproject.org/files/ENCFF789KSW/@@download/ENCFF789KSW.bam hg19 released borderline replicate concordance, low read depth ENCFF452MYV bam unfiltered alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 50 ENCFF454EYI, ENCFF807MUK 1500118592 ENCODE Processing Pipeline 6fe022223da7e40e465ba6485026db63 https://www.encodeproject.org/files/ENCFF452MYV/@@download/ENCFF452MYV.bam hg19 released borderline replicate concordance, low read depth ENCFF821GMK bigWig signal p-value ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF107VJA, ENCFF444TNY 764802479 ENCODE Processing Pipeline fe98432f49be40f5964de182914aa08a https://www.encodeproject.org/files/ENCFF821GMK/@@download/ENCFF821GMK.bigWig hg19 released borderline replicate concordance, low read depth ENCFF844TQX bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF107VJA, ENCFF444TNY 6439920 ENCODE Processing Pipeline 282e4782f8494d85976bcf5d26aef0a7 https://www.encodeproject.org/files/ENCFF844TQX/@@download/ENCFF844TQX.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF258FWL bigWig fold change over control ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF107VJA, ENCFF444TNY 594205650 ENCODE Processing Pipeline 2e640b56540a58fb594973cc7560589b https://www.encodeproject.org/files/ENCFF258FWL/@@download/ENCFF258FWL.bigWig hg19 released borderline replicate concordance, low read depth ENCFF570BQM bigWig signal p-value ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF082GBO, ENCFF107VJA, ENCFF444TNY, ENCFF708IYO 1400223074 ENCODE Processing Pipeline 1b9fc624c8753508c4fc350c49a6342b https://www.encodeproject.org/files/ENCFF570BQM/@@download/ENCFF570BQM.bigWig hg19 released borderline replicate concordance, low read depth ENCFF820ZTK bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF082GBO, ENCFF708IYO 5560359 ENCODE Processing Pipeline f8f01706849c4eee56860e0693bd4143 https://www.encodeproject.org/files/ENCFF820ZTK/@@download/ENCFF820ZTK.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF576LFG bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF082GBO, ENCFF107VJA, ENCFF444TNY, ENCFF708IYO 6999284 ENCODE Processing Pipeline 24ec94b58a385ffd60d08cb75a51c5b3 https://www.encodeproject.org/files/ENCFF576LFG/@@download/ENCFF576LFG.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF093TWU bigBed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF844TQX 13056797 ENCODE Processing Pipeline e1476f78228f5335e4359f21f6e76b99 https://www.encodeproject.org/files/ENCFF093TWU/@@download/ENCFF093TWU.bigBed hg19 released borderline replicate concordance, low read depth ENCFF234PWC bigWig fold change over control ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF082GBO, ENCFF708IYO 552460120 ENCODE Processing Pipeline cde38b2ca6b9d2db90117479592cff78 https://www.encodeproject.org/files/ENCFF234PWC/@@download/ENCFF234PWC.bigWig hg19 released borderline replicate concordance, low read depth ENCFF513CNT bed narrowPeak conservative idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF576LFG, ENCFF820ZTK, ENCFF844TQX 165635 ENCODE Processing Pipeline 3db56811c1a96845e566ea81b37416ed https://www.encodeproject.org/files/ENCFF513CNT/@@download/ENCFF513CNT.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF359ZYF bigBed narrowPeak conservative idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF513CNT 349026 ENCODE Processing Pipeline bac2a5aabc40e036f30cb844a7756f42 https://www.encodeproject.org/files/ENCFF359ZYF/@@download/ENCFF359ZYF.bigBed hg19 released borderline replicate concordance, low read depth ENCFF883CBQ bigWig signal p-value ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF082GBO, ENCFF708IYO 626586590 ENCODE Processing Pipeline e1cf843392550497cf9dff7b972be8d6 https://www.encodeproject.org/files/ENCFF883CBQ/@@download/ENCFF883CBQ.bigWig hg19 released borderline replicate concordance, low read depth ENCFF857HEZ bigWig fold change over control ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF082GBO, ENCFF107VJA, ENCFF444TNY, ENCFF708IYO 1232371252 ENCODE Processing Pipeline 86ca61ac680c47c1f2cddeee0a5fcb0d https://www.encodeproject.org/files/ENCFF857HEZ/@@download/ENCFF857HEZ.bigWig hg19 released borderline replicate concordance, low read depth ENCFF281BEC bigBed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF820ZTK 13096803 ENCODE Processing Pipeline f4d1527486ca9cea512644bb4cf8c0f4 https://www.encodeproject.org/files/ENCFF281BEC/@@download/ENCFF281BEC.bigBed hg19 released borderline replicate concordance, low read depth ENCFF993ILX bigBed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF576LFG 13234410 ENCODE Processing Pipeline 87d018cb32106bd08e459482a7ebf390 https://www.encodeproject.org/files/ENCFF993ILX/@@download/ENCFF993ILX.bigBed hg19 released borderline replicate concordance, low read depth ENCFF972LPT bed narrowPeak optimal idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF576LFG, ENCFF820ZTK, ENCFF844TQX 305539 ENCODE Processing Pipeline 1563fb6abad7b6e01e1a4b592835b343 https://www.encodeproject.org/files/ENCFF972LPT/@@download/ENCFF972LPT.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF578SVX bigBed narrowPeak optimal idr thresholded peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF972LPT 657998 ENCODE Processing Pipeline 2008e277d1642e83eaa1c6d01d55be17 https://www.encodeproject.org/files/ENCFF578SVX/@@download/ENCFF578SVX.bigBed hg19 released borderline replicate concordance, low read depth ENCFF580BBC fastq reads ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 1723674842 Richard Myers, HAIB b855e25ade820132d28a3616d22545a3 https://www.encodeproject.org/files/ENCFF580BBC/@@download/ENCFF580BBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF867PSG bam unfiltered alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 76 ENCFF580BBC, ENCFF643CGH 1992946578 ENCODE Processing Pipeline 79bb7a92d71248641dc78636de92a294 https://www.encodeproject.org/files/ENCFF867PSG/@@download/ENCFF867PSG.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF128PGJ bam unfiltered alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 76 ENCFF580BBC, ENCFF807MUK 1988635112 ENCODE Processing Pipeline 07f521d5e665a2c2e1f81a9bd87347f4 https://www.encodeproject.org/files/ENCFF128PGJ/@@download/ENCFF128PGJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF262QYO bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 76 ENCFF580BBC, ENCFF643CGH 1494605253 ENCODE Processing Pipeline a63be7bbf442acec46a230e7d72f9408 https://www.encodeproject.org/files/ENCFF262QYO/@@download/ENCFF262QYO.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF267MTS bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 76 ENCFF580BBC, ENCFF807MUK 1493916024 ENCODE Processing Pipeline c742f4bfcda991a7fc29e550df2e62de https://www.encodeproject.org/files/ENCFF267MTS/@@download/ENCFF267MTS.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF373AYF fastq reads ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 2040130746 Richard Myers, HAIB e6aeea0a84dd9192633b4bd3da13b9ed https://www.encodeproject.org/files/ENCFF373AYF/@@download/ENCFF373AYF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF918EWK bam unfiltered alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 76 ENCFF373AYF, ENCFF807MUK 2349521784 ENCODE Processing Pipeline 6e8c36711aa0aaea1a07a734724607ab https://www.encodeproject.org/files/ENCFF918EWK/@@download/ENCFF918EWK.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF833GRI bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 76 ENCFF373AYF, ENCFF643CGH 1787724773 ENCODE Processing Pipeline 6148e0245bce5651ccb4fad79dd78d88 https://www.encodeproject.org/files/ENCFF833GRI/@@download/ENCFF833GRI.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF865OOT bam unfiltered alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 76 ENCFF373AYF, ENCFF643CGH 2354439704 ENCODE Processing Pipeline 765ee2f59ea7b799124cd19fcc9c8b0a https://www.encodeproject.org/files/ENCFF865OOT/@@download/ENCFF865OOT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF511WMB bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 76 ENCFF373AYF, ENCFF807MUK 1786629475 ENCODE Processing Pipeline f6dc696522ceb4947ec9da82c279e818 https://www.encodeproject.org/files/ENCFF511WMB/@@download/ENCFF511WMB.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF022GTU bigWig signal p-value ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF511WMB 650798251 ENCODE Processing Pipeline 68a607e1c12300dbb929130d9e0d0df4 https://www.encodeproject.org/files/ENCFF022GTU/@@download/ENCFF022GTU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF503EPM bigWig fold change over control ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF833GRI 603611767 ENCODE Processing Pipeline 1aa61e5fb0f690897a8d899f1737d5c3 https://www.encodeproject.org/files/ENCFF503EPM/@@download/ENCFF503EPM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF490KMY bigWig signal p-value ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF267MTS 479513796 ENCODE Processing Pipeline d5da085c0b8004f0c2b0f88f593c35eb https://www.encodeproject.org/files/ENCFF490KMY/@@download/ENCFF490KMY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF648ASC bigWig signal p-value ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF267MTS, ENCFF511WMB 678518721 ENCODE Processing Pipeline cb01ca12af130349a14176ca5b3b924f https://www.encodeproject.org/files/ENCFF648ASC/@@download/ENCFF648ASC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF163CDF bigWig fold change over control ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF511WMB 607775285 ENCODE Processing Pipeline 24312998613c2dd47faae2d1566f53c2 https://www.encodeproject.org/files/ENCFF163CDF/@@download/ENCFF163CDF.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF613FMK bigWig signal p-value ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF262QYO, ENCFF833GRI 680097965 ENCODE Processing Pipeline 8d0d0d29f38164eb5e7829d83ab0158b https://www.encodeproject.org/files/ENCFF613FMK/@@download/ENCFF613FMK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF903KDS bigWig signal p-value ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF833GRI 650430854 ENCODE Processing Pipeline 47ca37159018dee4b8fb803242017979 https://www.encodeproject.org/files/ENCFF903KDS/@@download/ENCFF903KDS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF858SXP bigWig signal p-value ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF262QYO 569404061 ENCODE Processing Pipeline 9a7e44ee7ffed376bccbe04ea625546c https://www.encodeproject.org/files/ENCFF858SXP/@@download/ENCFF858SXP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF382KFF bigWig fold change over control ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF267MTS 491674072 ENCODE Processing Pipeline 944388b7df3f45691541dae6f9d3138f https://www.encodeproject.org/files/ENCFF382KFF/@@download/ENCFF382KFF.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF062NEJ bigWig fold change over control ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF262QYO 488860005 ENCODE Processing Pipeline eee5a8f2f65a26cb9873f3e2237b789f https://www.encodeproject.org/files/ENCFF062NEJ/@@download/ENCFF062NEJ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF051QWN bigWig fold change over control ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF267MTS, ENCFF511WMB 928639705 ENCODE Processing Pipeline a39fdb6cfbb9c149411c00518981f9c5 https://www.encodeproject.org/files/ENCFF051QWN/@@download/ENCFF051QWN.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF274CPY bigBed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF770RZT 13089348 ENCODE Processing Pipeline 681fc4d751e8be3e52e4c28f4f44dd35 https://www.encodeproject.org/files/ENCFF274CPY/@@download/ENCFF274CPY.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF719AHJ bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF267MTS 6015769 ENCODE Processing Pipeline 3023f0f36f4714dcc1109d80e359940b https://www.encodeproject.org/files/ENCFF719AHJ/@@download/ENCFF719AHJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF943YKG bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF833GRI 5984352 ENCODE Processing Pipeline ad4fd08ffa8362a72bfb4b90574159cc https://www.encodeproject.org/files/ENCFF943YKG/@@download/ENCFF943YKG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF770RZT bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF511WMB 5964926 ENCODE Processing Pipeline 4fcffece5777b5b360e87822c93c5b5b https://www.encodeproject.org/files/ENCFF770RZT/@@download/ENCFF770RZT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF487IOR bigWig fold change over control ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF262QYO, ENCFF833GRI 929714772 ENCODE Processing Pipeline e59075bc3d64296113013294049b8ed0 https://www.encodeproject.org/files/ENCFF487IOR/@@download/ENCFF487IOR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF461ILI bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF267MTS, ENCFF511WMB 6775767 ENCODE Processing Pipeline 34286a7bd8e99766a0c972c932ec54ff https://www.encodeproject.org/files/ENCFF461ILI/@@download/ENCFF461ILI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF434PMZ bigBed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF719AHJ 12949392 ENCODE Processing Pipeline 52c4d1c3077a0ce163ec7dced49f8338 https://www.encodeproject.org/files/ENCFF434PMZ/@@download/ENCFF434PMZ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF860ZQP bed narrowPeak conservative idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF461ILI, ENCFF719AHJ, ENCFF770RZT 327789 ENCODE Processing Pipeline 9f8fcc430ca06c8e0095ce14cd2e1b02 https://www.encodeproject.org/files/ENCFF860ZQP/@@download/ENCFF860ZQP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF529BRK bigBed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF461ILI 12916056 ENCODE Processing Pipeline 773e188d6b18128a104a8ab73b436fbf https://www.encodeproject.org/files/ENCFF529BRK/@@download/ENCFF529BRK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF539NNX bigBed narrowPeak optimal idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF864YJE 1058609 ENCODE Processing Pipeline 7eb0f4c47d63a656aa5450a0f53468cf https://www.encodeproject.org/files/ENCFF539NNX/@@download/ENCFF539NNX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF939OBV bigBed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF188TXK 12918195 ENCODE Processing Pipeline bf6e44477ad8dbe282afb0ecb019bd72 https://www.encodeproject.org/files/ENCFF939OBV/@@download/ENCFF939OBV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF184IYE bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF262QYO 6015931 ENCODE Processing Pipeline 82aae59bf94e2d1dbba46c37ce509430 https://www.encodeproject.org/files/ENCFF184IYE/@@download/ENCFF184IYE.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF060HVP bigBed narrowPeak conservative idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF860ZQP 596698 ENCODE Processing Pipeline 31a470cc08ae15ba2440716322ef2cac https://www.encodeproject.org/files/ENCFF060HVP/@@download/ENCFF060HVP.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF864YJE bed narrowPeak optimal idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF461ILI, ENCFF719AHJ, ENCFF770RZT 531822 ENCODE Processing Pipeline a952095c309e04251a39ad29756b5fc1 https://www.encodeproject.org/files/ENCFF864YJE/@@download/ENCFF864YJE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF721YBI bigBed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF184IYE 12953516 ENCODE Processing Pipeline 1f60097b783aaa50302754a072043bfa https://www.encodeproject.org/files/ENCFF721YBI/@@download/ENCFF721YBI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF862YTS bigBed narrowPeak conservative idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF927RTA 600791 ENCODE Processing Pipeline 8912f845aa135a1f0736f4aab66bf075 https://www.encodeproject.org/files/ENCFF862YTS/@@download/ENCFF862YTS.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF188TXK bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF262QYO, ENCFF833GRI 6777223 ENCODE Processing Pipeline f5a89e6507d04ebb3a3dd037b029aaa4 https://www.encodeproject.org/files/ENCFF188TXK/@@download/ENCFF188TXK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF254SNH bigBed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF943YKG 13093964 ENCODE Processing Pipeline 9e3ea233f7310f26c1926559dd228ae7 https://www.encodeproject.org/files/ENCFF254SNH/@@download/ENCFF254SNH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF491STA bigBed narrowPeak optimal idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF923NCW 1054035 ENCODE Processing Pipeline aa5c6da8d1247a4acb98ef214326cea2 https://www.encodeproject.org/files/ENCFF491STA/@@download/ENCFF491STA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF927RTA bed narrowPeak conservative idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF184IYE, ENCFF188TXK, ENCFF419RSJ, ENCFF943YKG 330598 ENCODE Processing Pipeline 27b988dc88f00f46bc1816d85420e6ad https://www.encodeproject.org/files/ENCFF927RTA/@@download/ENCFF927RTA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF923NCW bed narrowPeak optimal idr thresholded peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF184IYE, ENCFF188TXK, ENCFF419RSJ, ENCFF943YKG 527682 ENCODE Processing Pipeline 6932d6b5f40fede3ea96c757a1db5834 https://www.encodeproject.org/files/ENCFF923NCW/@@download/ENCFF923NCW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF396OEK fastq reads ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF210GUT 1623911899 Michael Snyder, Stanford 9195d8ac5cbb9c620f4d38d7a602db84 https://www.encodeproject.org/files/ENCFF396OEK/@@download/ENCFF396OEK.fastq.gz Illumina HiSeq 2000 /files/ENCFF885SDD/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF210GUT fastq reads ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF396OEK 1654557195 Michael Snyder, Stanford 5766f62ab40f7eb76a4d5b5cdf0004c1 https://www.encodeproject.org/files/ENCFF210GUT/@@download/ENCFF210GUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF390IKC/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF852ZIL bam alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF210GUT, ENCFF396OEK, ENCFF807MUK 2329624264 ENCODE Processing Pipeline a2d22db38d778c1024ffaa49706422c0 https://www.encodeproject.org/files/ENCFF852ZIL/@@download/ENCFF852ZIL.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF991PJC fastq reads ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF646RMM 5301045889 Michael Snyder, Stanford 67284eb295b1e71e6af5be9ba21f9721 https://www.encodeproject.org/files/ENCFF991PJC/@@download/ENCFF991PJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF390IKC/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF646RMM fastq reads ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF991PJC 5230426025 Michael Snyder, Stanford 7cbf13d27f068543f1eb162965120258 https://www.encodeproject.org/files/ENCFF646RMM/@@download/ENCFF646RMM.fastq.gz Illumina HiSeq 2000 /files/ENCFF885SDD/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF344XAW bam alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF210GUT, ENCFF396OEK, ENCFF646RMM, ENCFF807MUK, ENCFF991PJC 4824153571 ENCODE Processing Pipeline 57fd5fe4978bf8822d43ed55c8ef3549 https://www.encodeproject.org/files/ENCFF344XAW/@@download/ENCFF344XAW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF491QNR bam unfiltered alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF210GUT, ENCFF396OEK, ENCFF643CGH, ENCFF646RMM, ENCFF991PJC 11572028552 ENCODE Processing Pipeline aff224fd8cc29f545ba7e2278b2fb212 https://www.encodeproject.org/files/ENCFF491QNR/@@download/ENCFF491QNR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF361PXX bam unfiltered alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF210GUT, ENCFF396OEK, ENCFF646RMM, ENCFF807MUK, ENCFF991PJC 11583617807 ENCODE Processing Pipeline ff7a2bcde501a3291085df1b703f86f6 https://www.encodeproject.org/files/ENCFF361PXX/@@download/ENCFF361PXX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF022LUZ bam alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF210GUT, ENCFF396OEK, ENCFF643CGH, ENCFF646RMM, ENCFF991PJC 4827625641 ENCODE Processing Pipeline c9f0c5514cba2b40cdb6c759c72ce573 https://www.encodeproject.org/files/ENCFF022LUZ/@@download/ENCFF022LUZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF101NLP fastq reads ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1983825698 Richard Myers, HAIB 83b23cd01e763b89faa4e243f325d997 https://www.encodeproject.org/files/ENCFF101NLP/@@download/ENCFF101NLP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF511NCY bam unfiltered alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 76 ENCFF101NLP, ENCFF643CGH 2291677762 ENCODE Processing Pipeline 479339fdf64ba671f3a60b1107508711 https://www.encodeproject.org/files/ENCFF511NCY/@@download/ENCFF511NCY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF277BQN bam unfiltered alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 76 ENCFF101NLP, ENCFF807MUK 2286404875 ENCODE Processing Pipeline 6717eb6f31fd437046eb4e13719761a0 https://www.encodeproject.org/files/ENCFF277BQN/@@download/ENCFF277BQN.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF738UWF bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 76 ENCFF101NLP, ENCFF643CGH 1761292029 ENCODE Processing Pipeline f60de6ac36f83acbdb5ff9a6f1f97a4d https://www.encodeproject.org/files/ENCFF738UWF/@@download/ENCFF738UWF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF668QAW bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 76 ENCFF101NLP, ENCFF807MUK 1760280429 ENCODE Processing Pipeline 1ee9bb6c380b607a4d881b5ecfb7236b https://www.encodeproject.org/files/ENCFF668QAW/@@download/ENCFF668QAW.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF249JNC fastq reads ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 2388804288 Richard Myers, HAIB 05e402d6e8bbd8451d9f22f8178a8603 https://www.encodeproject.org/files/ENCFF249JNC/@@download/ENCFF249JNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF268WQR bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 76 ENCFF249JNC, ENCFF643CGH 2026785858 ENCODE Processing Pipeline 526b055bd519c564b6f3c9e26ddde245 https://www.encodeproject.org/files/ENCFF268WQR/@@download/ENCFF268WQR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF360EZE bam unfiltered alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 76 ENCFF249JNC, ENCFF807MUK 2750275647 ENCODE Processing Pipeline 10788aeb0238d9e59a69b230fd2fe751 https://www.encodeproject.org/files/ENCFF360EZE/@@download/ENCFF360EZE.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF608TJP bam unfiltered alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 76 ENCFF249JNC, ENCFF643CGH 2757761406 ENCODE Processing Pipeline 28302d89931ead19dce888cd4e5b940e https://www.encodeproject.org/files/ENCFF608TJP/@@download/ENCFF608TJP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF466PBF bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 76 ENCFF249JNC, ENCFF807MUK 2025379138 ENCODE Processing Pipeline deca17265e24ea992e7bf1a9415f6459 https://www.encodeproject.org/files/ENCFF466PBF/@@download/ENCFF466PBF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF061RAW bigWig signal p-value ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF668QAW 622569843 ENCODE Processing Pipeline 7e3176ee4784aea3442b876fe7b2d1c6 https://www.encodeproject.org/files/ENCFF061RAW/@@download/ENCFF061RAW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF477FVM bigWig fold change over control ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF668QAW 601110017 ENCODE Processing Pipeline d63525edf7760ac55277103aa523bfcb https://www.encodeproject.org/files/ENCFF477FVM/@@download/ENCFF477FVM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF585PJU bigWig signal p-value ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF466PBF 645545190 ENCODE Processing Pipeline 47e44f3a2f38e04f5b0a560ccdd9585a https://www.encodeproject.org/files/ENCFF585PJU/@@download/ENCFF585PJU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF089LDI bigWig signal p-value ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF466PBF, ENCFF668QAW 646130432 ENCODE Processing Pipeline ccca8b1db55e4b2975f653463ae5b15c https://www.encodeproject.org/files/ENCFF089LDI/@@download/ENCFF089LDI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF287OJT bigWig fold change over control ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF466PBF 665023467 ENCODE Processing Pipeline ce2af4865c1fd5022225c42b5f8963fd https://www.encodeproject.org/files/ENCFF287OJT/@@download/ENCFF287OJT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF129TSM bigWig fold change over control ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF466PBF, ENCFF668QAW 1071931480 ENCODE Processing Pipeline f6b208c6b59b57fa87a3f3961ee2a347 https://www.encodeproject.org/files/ENCFF129TSM/@@download/ENCFF129TSM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF998ZZB bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF668QAW 6570414 ENCODE Processing Pipeline bdf447bdf52e9686f821b220728802b4 https://www.encodeproject.org/files/ENCFF998ZZB/@@download/ENCFF998ZZB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF875UCR bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF466PBF 6406182 ENCODE Processing Pipeline f49ab9358eeb7023973f2790d19eb3b4 https://www.encodeproject.org/files/ENCFF875UCR/@@download/ENCFF875UCR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF132YZW bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF466PBF, ENCFF668QAW 7028734 ENCODE Processing Pipeline d84d5911ddc8b57d3b0037912fa96f66 https://www.encodeproject.org/files/ENCFF132YZW/@@download/ENCFF132YZW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF975ZEU bigBed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF998ZZB 12936582 ENCODE Processing Pipeline 9d288e274aafa1436c92fcc6b6933664 https://www.encodeproject.org/files/ENCFF975ZEU/@@download/ENCFF975ZEU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF056FHR bigBed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF875UCR 13111317 ENCODE Processing Pipeline 96c7c69c5e1ec825f03219d8e5a7b159 https://www.encodeproject.org/files/ENCFF056FHR/@@download/ENCFF056FHR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF801DSH bigBed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF132YZW 12930914 ENCODE Processing Pipeline 7693165ef6dd17b81ddc36d03a9301ea https://www.encodeproject.org/files/ENCFF801DSH/@@download/ENCFF801DSH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF802CPZ bed narrowPeak optimal idr thresholded peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF132YZW, ENCFF875UCR, ENCFF998ZZB 363126 ENCODE Processing Pipeline c1f9b6ec20d7cb89fa9f7c87fb0e497f https://www.encodeproject.org/files/ENCFF802CPZ/@@download/ENCFF802CPZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF050GJR bigBed narrowPeak optimal idr thresholded peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF802CPZ 724603 ENCODE Processing Pipeline d3aad2b2531733580c55ebd75c0e7dfb https://www.encodeproject.org/files/ENCFF050GJR/@@download/ENCFF050GJR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF534TCH bigWig fold change over control ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF738UWF 604180086 ENCODE Processing Pipeline 92728bfb5f8d323194306ec46d3bce42 https://www.encodeproject.org/files/ENCFF534TCH/@@download/ENCFF534TCH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF267ACW bigWig signal p-value ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF738UWF 622127726 ENCODE Processing Pipeline 512d5c77dec6a756b141ea7e55311dbb https://www.encodeproject.org/files/ENCFF267ACW/@@download/ENCFF267ACW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF174KSV bigWig fold change over control ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF268WQR 690481899 ENCODE Processing Pipeline 5f3771c04e68beaedf39b35833b24cd6 https://www.encodeproject.org/files/ENCFF174KSV/@@download/ENCFF174KSV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF259KSZ bigWig signal p-value ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF268WQR 652597767 ENCODE Processing Pipeline af9e89fda28c93f0201a5ae8fc923322 https://www.encodeproject.org/files/ENCFF259KSZ/@@download/ENCFF259KSZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF970HNM bigWig signal p-value ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF268WQR, ENCFF738UWF 645723201 ENCODE Processing Pipeline f00087ff112c58132bd0196311ef12be https://www.encodeproject.org/files/ENCFF970HNM/@@download/ENCFF970HNM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF564KJB bigWig fold change over control ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF268WQR, ENCFF738UWF 1069729790 ENCODE Processing Pipeline d148ec53b713d2eb6279e9e443b62d83 https://www.encodeproject.org/files/ENCFF564KJB/@@download/ENCFF564KJB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF655HQP bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF738UWF 6556300 ENCODE Processing Pipeline 366a4f67563534987d32bf90ef219742 https://www.encodeproject.org/files/ENCFF655HQP/@@download/ENCFF655HQP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF760XQB bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF268WQR, ENCFF738UWF 7010759 ENCODE Processing Pipeline 7062830f824a7e7c649e9c3a485bca72 https://www.encodeproject.org/files/ENCFF760XQB/@@download/ENCFF760XQB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF958XII bigBed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF655HQP 12957696 ENCODE Processing Pipeline d3586544f8de1ed1eb55663cc44152a3 https://www.encodeproject.org/files/ENCFF958XII/@@download/ENCFF958XII.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF605JQV bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF268WQR 6392076 ENCODE Processing Pipeline 18bce5b270e50bbf1fdd1dd0142c3384 https://www.encodeproject.org/files/ENCFF605JQV/@@download/ENCFF605JQV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF257UJG bigBed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF605JQV 13101186 ENCODE Processing Pipeline 4b6a1dda473d1ef4e4cce879939d18db https://www.encodeproject.org/files/ENCFF257UJG/@@download/ENCFF257UJG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF303SHI bed narrowPeak conservative idr thresholded peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF605JQV, ENCFF655HQP, ENCFF760XQB 357271 ENCODE Processing Pipeline 4780bebe5abc037829216953cdfa25f8 https://www.encodeproject.org/files/ENCFF303SHI/@@download/ENCFF303SHI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF766KKU bed narrowPeak optimal idr thresholded peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF605JQV, ENCFF655HQP, ENCFF760XQB 357976 ENCODE Processing Pipeline 955f62d3af72a96f44b4f1e07bc0129a https://www.encodeproject.org/files/ENCFF766KKU/@@download/ENCFF766KKU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF452LPG bigBed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF760XQB 12913817 ENCODE Processing Pipeline ed663e8c80b407224ee80335fbb684d2 https://www.encodeproject.org/files/ENCFF452LPG/@@download/ENCFF452LPG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF072XVE bigBed narrowPeak optimal idr thresholded peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF766KKU 718486 ENCODE Processing Pipeline c7a250a5d2ede805b83b920c028759fb https://www.encodeproject.org/files/ENCFF072XVE/@@download/ENCFF072XVE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF316ULQ bigBed narrowPeak conservative idr thresholded peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF303SHI 717300 ENCODE Processing Pipeline a71331d2da6dad8c9135bead7fa25ca1 https://www.encodeproject.org/files/ENCFF316ULQ/@@download/ENCFF316ULQ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF496CZA fastq reads ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF028NOQ 3584891358 Michael Snyder, Stanford de9c581e7ad0570e07ff5cc2ce1d5cfe SRA:SRR6213855 https://www.encodeproject.org/files/ENCFF496CZA/@@download/ENCFF496CZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF953WVU/ released missing genetic modification characterization ENCFF028NOQ fastq reads ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF496CZA 3669317513 Michael Snyder, Stanford 63f884298c0232909273095cbe704634 SRA:SRR6213855 https://www.encodeproject.org/files/ENCFF028NOQ/@@download/ENCFF028NOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF911YKD/ released missing genetic modification characterization ENCFF567TRK fastq reads ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF392MVW 4447163098 Michael Snyder, Stanford 6b5c3bf5e5c8068f1f8d196ce245d75a SRA:SRR6213856 https://www.encodeproject.org/files/ENCFF567TRK/@@download/ENCFF567TRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF911YKD/ released missing genetic modification characterization ENCFF392MVW fastq reads ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF567TRK 4383399884 Michael Snyder, Stanford 0453ffcfd0b11fa1441f8e74bf9c70b5 SRA:SRR6213856 https://www.encodeproject.org/files/ENCFF392MVW/@@download/ENCFF392MVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF953WVU/ released missing genetic modification characterization ENCFF303IRP bam unfiltered alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 100 ENCFF392MVW, ENCFF567TRK, ENCFF643CGH 9455479317 ENCODE Processing Pipeline ff60b43b5282296b07535f05010e335d https://www.encodeproject.org/files/ENCFF303IRP/@@download/ENCFF303IRP.bam GRCh38 released missing genetic modification characterization ENCFF801LQC bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 100 ENCFF028NOQ, ENCFF496CZA, ENCFF643CGH 6154385409 ENCODE Processing Pipeline c068f6694bd63cf7cf0b7435f23b74fe https://www.encodeproject.org/files/ENCFF801LQC/@@download/ENCFF801LQC.bam GRCh38 released missing genetic modification characterization ENCFF092XPV bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 100 ENCFF392MVW, ENCFF567TRK, ENCFF643CGH 7309611198 ENCODE Processing Pipeline 06413cd52bc0f19f74634418447cf64b https://www.encodeproject.org/files/ENCFF092XPV/@@download/ENCFF092XPV.bam GRCh38 released missing genetic modification characterization ENCFF703DBL bam unfiltered alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 100 ENCFF028NOQ, ENCFF496CZA, ENCFF643CGH 7899800184 ENCODE Processing Pipeline 246a6864779330f5a131f61cd54fa481 https://www.encodeproject.org/files/ENCFF703DBL/@@download/ENCFF703DBL.bam GRCh38 released missing genetic modification characterization ENCFF158JVR bam unfiltered alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 100 ENCFF392MVW, ENCFF567TRK, ENCFF807MUK 9437106522 ENCODE Processing Pipeline 87b00d4c0710197f752e705d6f0a7eb5 https://www.encodeproject.org/files/ENCFF158JVR/@@download/ENCFF158JVR.bam hg19 released missing genetic modification characterization ENCFF244CWH bam unfiltered alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 100 ENCFF028NOQ, ENCFF496CZA, ENCFF807MUK 7881597061 ENCODE Processing Pipeline 7a572e7b709b8611d4db72199b0396b2 https://www.encodeproject.org/files/ENCFF244CWH/@@download/ENCFF244CWH.bam hg19 released missing genetic modification characterization ENCFF929HAN bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 100 ENCFF392MVW, ENCFF567TRK, ENCFF807MUK 7306220624 ENCODE Processing Pipeline 442bef002de0713f089303acdd0faf0c https://www.encodeproject.org/files/ENCFF929HAN/@@download/ENCFF929HAN.bam hg19 released missing genetic modification characterization ENCFF309ASH bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 100 ENCFF028NOQ, ENCFF496CZA, ENCFF807MUK 6152579785 ENCODE Processing Pipeline edfe044de564c6b47513f2daebdaedd0 https://www.encodeproject.org/files/ENCFF309ASH/@@download/ENCFF309ASH.bam hg19 released missing genetic modification characterization ENCFF272ULO bed narrowPeak optimal idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF183FOU, ENCFF335AYY, ENCFF880AEL 839761 ENCODE Processing Pipeline 29d7e21f3c25f41bd7185514faa49553 https://www.encodeproject.org/files/ENCFF272ULO/@@download/ENCFF272ULO.bed.gz hg19 released missing genetic modification characterization ENCFF813YEV bigBed narrowPeak optimal idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF272ULO 1659022 ENCODE Processing Pipeline e392bd9673ff78c11b12ed83aad5c0dc https://www.encodeproject.org/files/ENCFF813YEV/@@download/ENCFF813YEV.bigBed hg19 released missing genetic modification characterization ENCFF710RTW bigWig signal p-value ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF092XPV, ENCFF713PVH, ENCFF801LQC 2000035391 ENCODE Processing Pipeline 3d92656f45a52c066ba74dbeeeeba87a https://www.encodeproject.org/files/ENCFF710RTW/@@download/ENCFF710RTW.bigWig GRCh38 released missing genetic modification characterization ENCFF833DME bigWig fold change over control ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF309ASH, ENCFF666KPK 1560513804 ENCODE Processing Pipeline 83534f6348fed817773a8a83aadab038 https://www.encodeproject.org/files/ENCFF833DME/@@download/ENCFF833DME.bigWig hg19 released missing genetic modification characterization ENCFF010QMH bigWig fold change over control ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF666KPK, ENCFF929HAN 1720571524 ENCODE Processing Pipeline 26cc5be71da37c9cad18e45010a58302 https://www.encodeproject.org/files/ENCFF010QMH/@@download/ENCFF010QMH.bigWig hg19 released missing genetic modification characterization ENCFF183FOU bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF666KPK, ENCFF929HAN 7199777 ENCODE Processing Pipeline bad146c1707938eeacedc3cfa7174b29 https://www.encodeproject.org/files/ENCFF183FOU/@@download/ENCFF183FOU.bed.gz hg19 released missing genetic modification characterization ENCFF880AEL bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF309ASH, ENCFF666KPK, ENCFF929HAN 7310147 ENCODE Processing Pipeline 4ca0318ae43ad207a919bf225255991b https://www.encodeproject.org/files/ENCFF880AEL/@@download/ENCFF880AEL.bed.gz hg19 released missing genetic modification characterization ENCFF066XMS bigBed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF335AYY 13531898 ENCODE Processing Pipeline f9572c29f972eb350628207915eb883a https://www.encodeproject.org/files/ENCFF066XMS/@@download/ENCFF066XMS.bigBed hg19 released missing genetic modification characterization ENCFF165ZYS bigWig signal p-value ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF092XPV, ENCFF713PVH 1810897319 ENCODE Processing Pipeline f165164026ec538a1f2b6176e914b89e https://www.encodeproject.org/files/ENCFF165ZYS/@@download/ENCFF165ZYS.bigWig GRCh38 released missing genetic modification characterization ENCFF797MRW bed narrowPeak optimal idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF401GFI, ENCFF419RSJ, ENCFF637YLM, ENCFF875VQM 841645 ENCODE Processing Pipeline d4109884f770228a5eb64a2622e4f30b https://www.encodeproject.org/files/ENCFF797MRW/@@download/ENCFF797MRW.bed.gz GRCh38 released missing genetic modification characterization ENCFF506QIM bigWig signal p-value ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF666KPK, ENCFF929HAN 1571992845 ENCODE Processing Pipeline 248e72fe266b12a18a1a2fef1eecce96 https://www.encodeproject.org/files/ENCFF506QIM/@@download/ENCFF506QIM.bigWig hg19 released missing genetic modification characterization ENCFF672VRU bigWig signal p-value ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF309ASH, ENCFF666KPK, ENCFF929HAN 1992879723 ENCODE Processing Pipeline 7068183446fbdfdac65accc720871662 https://www.encodeproject.org/files/ENCFF672VRU/@@download/ENCFF672VRU.bigWig hg19 released missing genetic modification characterization ENCFF540WMP bigWig fold change over control ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF309ASH, ENCFF666KPK, ENCFF929HAN 2208127363 ENCODE Processing Pipeline 620a9c4a78496503f76fb48a8989b51e https://www.encodeproject.org/files/ENCFF540WMP/@@download/ENCFF540WMP.bigWig hg19 released missing genetic modification characterization ENCFF335AYY bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF309ASH, ENCFF666KPK 7134776 ENCODE Processing Pipeline 7003592965f9b217550bb6548c2dd4f1 https://www.encodeproject.org/files/ENCFF335AYY/@@download/ENCFF335AYY.bed.gz hg19 released missing genetic modification characterization ENCFF204VBC bigBed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF183FOU 13691926 ENCODE Processing Pipeline c2c7ebc0f6d03c70012f3fc76c3a2056 https://www.encodeproject.org/files/ENCFF204VBC/@@download/ENCFF204VBC.bigBed hg19 released missing genetic modification characterization ENCFF709MOC bigBed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF880AEL 13705198 ENCODE Processing Pipeline 359275a6986e677ad20d0fb8a8d7604b https://www.encodeproject.org/files/ENCFF709MOC/@@download/ENCFF709MOC.bigBed hg19 released missing genetic modification characterization ENCFF674WGB bed narrowPeak conservative idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF183FOU, ENCFF335AYY, ENCFF880AEL 734107 ENCODE Processing Pipeline aa6eeaf78f1fbb224fd42ca73c50a831 https://www.encodeproject.org/files/ENCFF674WGB/@@download/ENCFF674WGB.bed.gz hg19 released missing genetic modification characterization ENCFF999WJP bigBed narrowPeak conservative idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF674WGB 1495402 ENCODE Processing Pipeline 58e722822fd609eea45d7a0ee1e65c77 https://www.encodeproject.org/files/ENCFF999WJP/@@download/ENCFF999WJP.bigBed hg19 released missing genetic modification characterization ENCFF396YAY bigWig signal p-value ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF309ASH, ENCFF666KPK 1264128674 ENCODE Processing Pipeline 10b8f248aec2910cf46a4f593f657e8b https://www.encodeproject.org/files/ENCFF396YAY/@@download/ENCFF396YAY.bigWig hg19 released missing genetic modification characterization ENCFF401GFI bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF092XPV, ENCFF713PVH 7119297 ENCODE Processing Pipeline f65da31c713ff3f15222dbcdfcffbea9 https://www.encodeproject.org/files/ENCFF401GFI/@@download/ENCFF401GFI.bed.gz GRCh38 released missing genetic modification characterization ENCFF875VQM bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF092XPV, ENCFF713PVH, ENCFF801LQC 7281778 ENCODE Processing Pipeline a0d005e89242b10a6ef7e7328289427b https://www.encodeproject.org/files/ENCFF875VQM/@@download/ENCFF875VQM.bed.gz GRCh38 released missing genetic modification characterization ENCFF638SAT bed narrowPeak conservative idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF401GFI, ENCFF419RSJ, ENCFF637YLM, ENCFF875VQM 722413 ENCODE Processing Pipeline e12eefbd6bb8cc4cb216ce3171661a1e https://www.encodeproject.org/files/ENCFF638SAT/@@download/ENCFF638SAT.bed.gz GRCh38 released missing genetic modification characterization ENCFF295KBC bigWig signal p-value ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF713PVH, ENCFF801LQC 1526729091 ENCODE Processing Pipeline 180e6e1b2e62fc594d9f0b5c01677149 https://www.encodeproject.org/files/ENCFF295KBC/@@download/ENCFF295KBC.bigWig GRCh38 released missing genetic modification characterization ENCFF329TBA bigBed narrowPeak optimal idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF797MRW 1670908 ENCODE Processing Pipeline 920aa7dd92bb8764331cfa044339e96c https://www.encodeproject.org/files/ENCFF329TBA/@@download/ENCFF329TBA.bigBed GRCh38 released missing genetic modification characterization ENCFF422PXH bigWig fold change over control ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF092XPV, ENCFF713PVH 1766286174 ENCODE Processing Pipeline cea4b96b44a668c05ba6455049fd28fd https://www.encodeproject.org/files/ENCFF422PXH/@@download/ENCFF422PXH.bigWig GRCh38 released missing genetic modification characterization ENCFF649LJJ bigWig fold change over control ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF092XPV, ENCFF713PVH, ENCFF801LQC 2212912662 ENCODE Processing Pipeline f9f4ac3bd24b22c28df44defa08fa5bc https://www.encodeproject.org/files/ENCFF649LJJ/@@download/ENCFF649LJJ.bigWig GRCh38 released missing genetic modification characterization ENCFF596OGC bigBed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF875VQM 13685163 ENCODE Processing Pipeline e4d763f07a865fbda694957e646977e4 https://www.encodeproject.org/files/ENCFF596OGC/@@download/ENCFF596OGC.bigBed GRCh38 released missing genetic modification characterization ENCFF013BLU bigWig fold change over control ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF713PVH, ENCFF801LQC 1618908819 ENCODE Processing Pipeline a99eeace260443d17a6bc90b9d3b0a4b https://www.encodeproject.org/files/ENCFF013BLU/@@download/ENCFF013BLU.bigWig GRCh38 released missing genetic modification characterization ENCFF637YLM bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF713PVH, ENCFF801LQC 7084942 ENCODE Processing Pipeline a6381d775e78814b8726ea3b8d6dd7bc https://www.encodeproject.org/files/ENCFF637YLM/@@download/ENCFF637YLM.bed.gz GRCh38 released missing genetic modification characterization ENCFF903FIF bigBed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF637YLM 13488050 ENCODE Processing Pipeline c0c08094a005b6286296b0a11c56db2c https://www.encodeproject.org/files/ENCFF903FIF/@@download/ENCFF903FIF.bigBed GRCh38 released missing genetic modification characterization ENCFF277DTF bigBed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF401GFI 13612784 ENCODE Processing Pipeline 0040130f6c181d92cb0351fc70fd8da3 https://www.encodeproject.org/files/ENCFF277DTF/@@download/ENCFF277DTF.bigBed GRCh38 released missing genetic modification characterization ENCFF151GXO bigBed narrowPeak conservative idr thresholded peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF638SAT 1487104 ENCODE Processing Pipeline 9af319aa7730fbcb461ad33ece9bc595 https://www.encodeproject.org/files/ENCFF151GXO/@@download/ENCFF151GXO.bigBed GRCh38 released missing genetic modification characterization ENCFF962RJG bam unfiltered alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF521BUZ, ENCFF807MUK, ENCFF993ZKD 5402203849 ENCODE Processing Pipeline ca14292959244f1cb057264d1d82ad6d https://www.encodeproject.org/files/ENCFF962RJG/@@download/ENCFF962RJG.bam hg19 released antibody characterized with exemption ENCFF141EJI bam unfiltered alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 100 ENCFF173TVY, ENCFF428YAW, ENCFF807MUK 6654862602 ENCODE Processing Pipeline ff66401c069e86f8c3754485fd233116 https://www.encodeproject.org/files/ENCFF141EJI/@@download/ENCFF141EJI.bam hg19 released antibody characterized with exemption ENCFF173TVY fastq reads ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 1 100 paired-ended 2 ENCFF428YAW 3057917123 Michael Snyder, Stanford 153f2b48cc13a4755b55b0689d3a2099 SRA:SRR5111870 https://www.encodeproject.org/files/ENCFF173TVY/@@download/ENCFF173TVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released antibody characterized with exemption ENCFF521BUZ fastq reads ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF993ZKD 2377267896 Michael Snyder, Stanford ef586969f15995773a89b0c0ebdc9451 SRA:SRR5111869 https://www.encodeproject.org/files/ENCFF521BUZ/@@download/ENCFF521BUZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released antibody characterized with exemption ENCFF993ZKD fastq reads ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF521BUZ 2474889364 Michael Snyder, Stanford 7492c133f4dc644e2389394420867053 SRA:SRR5111869 https://www.encodeproject.org/files/ENCFF993ZKD/@@download/ENCFF993ZKD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released antibody characterized with exemption ENCFF428YAW fastq reads ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 1 100 paired-ended 1 ENCFF173TVY 2975669694 Michael Snyder, Stanford d4ee00584b7a97a20103ae3241788c22 SRA:SRR5111870 https://www.encodeproject.org/files/ENCFF428YAW/@@download/ENCFF428YAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released antibody characterized with exemption ENCFF560RIF bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 100 ENCFF173TVY, ENCFF428YAW, ENCFF807MUK 5609689016 ENCODE Processing Pipeline 7b490aac95b9de98b898977215bbf328 https://www.encodeproject.org/files/ENCFF560RIF/@@download/ENCFF560RIF.bam hg19 released antibody characterized with exemption ENCFF934LPP bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF521BUZ, ENCFF807MUK, ENCFF993ZKD 4690367946 ENCODE Processing Pipeline 4e27be6a35ffa1d45a9c074cb8bae3de https://www.encodeproject.org/files/ENCFF934LPP/@@download/ENCFF934LPP.bam hg19 released antibody characterized with exemption ENCFF217ZRK bigWig signal p-value ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF449NNE, ENCFF934LPP 1221356105 ENCODE Processing Pipeline 6a89e3121792350b39f96fb50624be86 https://www.encodeproject.org/files/ENCFF217ZRK/@@download/ENCFF217ZRK.bigWig hg19 released antibody characterized with exemption ENCFF770KYG bigWig signal p-value ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF560RIF, ENCFF999EQI 1295639623 ENCODE Processing Pipeline 3cd31e3270d7d6e125fb559eee827c75 https://www.encodeproject.org/files/ENCFF770KYG/@@download/ENCFF770KYG.bigWig hg19 released antibody characterized with exemption ENCFF949MMJ bigWig signal p-value ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF449NNE, ENCFF560RIF, ENCFF934LPP, ENCFF999EQI 2056338503 ENCODE Processing Pipeline c6ee63255bf7a9a4693beb0896f571ab https://www.encodeproject.org/files/ENCFF949MMJ/@@download/ENCFF949MMJ.bigWig hg19 released antibody characterized with exemption ENCFF070FBA bigWig fold change over control ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF449NNE, ENCFF934LPP 1332197765 ENCODE Processing Pipeline 1ede3bf6e329a05e414b4ae0915f1edc https://www.encodeproject.org/files/ENCFF070FBA/@@download/ENCFF070FBA.bigWig hg19 released antibody characterized with exemption ENCFF435YYT bigWig fold change over control ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF560RIF, ENCFF999EQI 1252059278 ENCODE Processing Pipeline 16169b4a129567e884870df43606a005 https://www.encodeproject.org/files/ENCFF435YYT/@@download/ENCFF435YYT.bigWig hg19 released antibody characterized with exemption ENCFF172LWV bigWig fold change over control ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF449NNE, ENCFF560RIF, ENCFF934LPP, ENCFF999EQI 2215346142 ENCODE Processing Pipeline 6eba8936791c5d09c9c4b014348a7cbf https://www.encodeproject.org/files/ENCFF172LWV/@@download/ENCFF172LWV.bigWig hg19 released antibody characterized with exemption ENCFF210KEP bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF449NNE, ENCFF934LPP 6366042 ENCODE Processing Pipeline 730a2343c94f5d0cd106f714d857648a https://www.encodeproject.org/files/ENCFF210KEP/@@download/ENCFF210KEP.bed.gz hg19 released antibody characterized with exemption ENCFF427HUY bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF560RIF, ENCFF999EQI 6439706 ENCODE Processing Pipeline 2f938ab5d7806c791066b483088f3f39 https://www.encodeproject.org/files/ENCFF427HUY/@@download/ENCFF427HUY.bed.gz hg19 released antibody characterized with exemption ENCFF075QET bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF449NNE, ENCFF560RIF, ENCFF934LPP, ENCFF999EQI 7184491 ENCODE Processing Pipeline f0144ce1483986c20c3fdbd2dc337911 https://www.encodeproject.org/files/ENCFF075QET/@@download/ENCFF075QET.bed.gz hg19 released antibody characterized with exemption ENCFF523IGH bigBed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF427HUY 11315840 ENCODE Processing Pipeline 9a973d7109faef6f593992da8a1adc1d https://www.encodeproject.org/files/ENCFF523IGH/@@download/ENCFF523IGH.bigBed hg19 released antibody characterized with exemption ENCFF929QQS bigBed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF210KEP 11436583 ENCODE Processing Pipeline 97d82d16ced0264c533e1eb22611b19a https://www.encodeproject.org/files/ENCFF929QQS/@@download/ENCFF929QQS.bigBed hg19 released antibody characterized with exemption ENCFF490MWX bigBed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF075QET 11399308 ENCODE Processing Pipeline a0374c8b5ac23fcda5d53d71499dbcf3 https://www.encodeproject.org/files/ENCFF490MWX/@@download/ENCFF490MWX.bigBed hg19 released antibody characterized with exemption ENCFF018ZCT bed narrowPeak conservative idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF001TDO, ENCFF075QET, ENCFF210KEP, ENCFF427HUY 68307 ENCODE Processing Pipeline c79a843d0065f44515334ab380b91174 https://www.encodeproject.org/files/ENCFF018ZCT/@@download/ENCFF018ZCT.bed.gz hg19 released antibody characterized with exemption ENCFF807BXT bed narrowPeak optimal idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF001TDO, ENCFF075QET, ENCFF210KEP, ENCFF427HUY 124523 ENCODE Processing Pipeline 3b8da53e9d682463032b7d6e78b36a8e https://www.encodeproject.org/files/ENCFF807BXT/@@download/ENCFF807BXT.bed.gz hg19 released antibody characterized with exemption ENCFF817CDH bigBed narrowPeak conservative idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF018ZCT 166922 ENCODE Processing Pipeline e3576cfce43d0ee23d0d6e72ef7e9bd9 https://www.encodeproject.org/files/ENCFF817CDH/@@download/ENCFF817CDH.bigBed hg19 released antibody characterized with exemption ENCFF989AON bigBed narrowPeak optimal idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF807BXT 291985 ENCODE Processing Pipeline 2ed6aa32b55519d273aa9a014dd82eac https://www.encodeproject.org/files/ENCFF989AON/@@download/ENCFF989AON.bigBed hg19 released antibody characterized with exemption ENCFF583TPJ bam unfiltered alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF521BUZ, ENCFF643CGH, ENCFF993ZKD 5415168934 ENCODE Processing Pipeline 2e32f515ba3b2922a48c042da9ac90b1 https://www.encodeproject.org/files/ENCFF583TPJ/@@download/ENCFF583TPJ.bam GRCh38 released antibody characterized with exemption ENCFF205IXQ bam unfiltered alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 100 ENCFF173TVY, ENCFF428YAW, ENCFF643CGH 6668863973 ENCODE Processing Pipeline 92709c52d2259751aac281e4410faf90 https://www.encodeproject.org/files/ENCFF205IXQ/@@download/ENCFF205IXQ.bam GRCh38 released antibody characterized with exemption ENCFF862DYV bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF521BUZ, ENCFF643CGH, ENCFF993ZKD 4701891822 ENCODE Processing Pipeline 0d5c36706088b1ce83419b0b71bfc2b0 https://www.encodeproject.org/files/ENCFF862DYV/@@download/ENCFF862DYV.bam GRCh38 released antibody characterized with exemption ENCFF343FIG bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 100 ENCFF173TVY, ENCFF428YAW, ENCFF643CGH 5626494384 ENCODE Processing Pipeline ceab3c9ee774ba4b5704e8880ad30d5c https://www.encodeproject.org/files/ENCFF343FIG/@@download/ENCFF343FIG.bam GRCh38 released antibody characterized with exemption ENCFF138PUD bigWig signal p-value ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF190EPQ, ENCFF862DYV 1076927088 ENCODE Processing Pipeline 29a5b88259465a7b26876131c9d8ecc3 https://www.encodeproject.org/files/ENCFF138PUD/@@download/ENCFF138PUD.bigWig GRCh38 released antibody characterized with exemption ENCFF521RCK bigWig signal p-value ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF343FIG, ENCFF950AXC 1099678284 ENCODE Processing Pipeline 8a2c906d873ddf3d47fe22025bcdaf31 https://www.encodeproject.org/files/ENCFF521RCK/@@download/ENCFF521RCK.bigWig GRCh38 released antibody characterized with exemption ENCFF616OKV bigWig signal p-value ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF190EPQ, ENCFF343FIG, ENCFF862DYV, ENCFF950AXC 2236026164 ENCODE Processing Pipeline 171b45d3bb7876fe9af9ac7333008b9a https://www.encodeproject.org/files/ENCFF616OKV/@@download/ENCFF616OKV.bigWig GRCh38 released antibody characterized with exemption ENCFF687COL bigWig fold change over control ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF190EPQ, ENCFF862DYV 1302704870 ENCODE Processing Pipeline 6be4acf107f51f5ce8853144640f9d4b https://www.encodeproject.org/files/ENCFF687COL/@@download/ENCFF687COL.bigWig GRCh38 released antibody characterized with exemption ENCFF327HFJ bigWig fold change over control ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF343FIG, ENCFF950AXC 1276217340 ENCODE Processing Pipeline 732d8f5d2b59ab04f5bb9bcbbddeeac8 https://www.encodeproject.org/files/ENCFF327HFJ/@@download/ENCFF327HFJ.bigWig GRCh38 released antibody characterized with exemption ENCFF764LRI bigWig fold change over control ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF190EPQ, ENCFF343FIG, ENCFF862DYV, ENCFF950AXC 2255369471 ENCODE Processing Pipeline f932c22b4b7e191c76e8e33c31962a0c https://www.encodeproject.org/files/ENCFF764LRI/@@download/ENCFF764LRI.bigWig GRCh38 released antibody characterized with exemption ENCFF414KWS bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF190EPQ, ENCFF862DYV 6215689 ENCODE Processing Pipeline 547501cd1a14fd4fe13264fb666b2d47 https://www.encodeproject.org/files/ENCFF414KWS/@@download/ENCFF414KWS.bed.gz GRCh38 released antibody characterized with exemption ENCFF036MNH bigBed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF414KWS 11447853 ENCODE Processing Pipeline ffd796f1ea18768c71b408388998277b https://www.encodeproject.org/files/ENCFF036MNH/@@download/ENCFF036MNH.bigBed GRCh38 released antibody characterized with exemption ENCFF590ZWM bigBed narrowPeak conservative idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF485YDQ 172893 ENCODE Processing Pipeline aeabcd99afca0b27bf2772b694cab282 https://www.encodeproject.org/files/ENCFF590ZWM/@@download/ENCFF590ZWM.bigBed GRCh38 released antibody characterized with exemption ENCFF684TTF bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF190EPQ, ENCFF343FIG, ENCFF862DYV, ENCFF950AXC 7148214 ENCODE Processing Pipeline 7cba09ea781bba00118879e9a3b1e047 https://www.encodeproject.org/files/ENCFF684TTF/@@download/ENCFF684TTF.bed.gz GRCh38 released antibody characterized with exemption ENCFF485YDQ bed narrowPeak conservative idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF073IQI, ENCFF414KWS, ENCFF419RSJ, ENCFF684TTF 71337 ENCODE Processing Pipeline 2e947c5ddcbab73acbc03658426bb697 https://www.encodeproject.org/files/ENCFF485YDQ/@@download/ENCFF485YDQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF073IQI bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF343FIG, ENCFF950AXC 6272176 ENCODE Processing Pipeline 9d3d13bd2debc139980fb9d8470e9bd1 https://www.encodeproject.org/files/ENCFF073IQI/@@download/ENCFF073IQI.bed.gz GRCh38 released antibody characterized with exemption ENCFF981ZJS bigBed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 ENCFF073IQI 11321683 ENCODE Processing Pipeline ac5cf41f7750339f517564b4a27e5b04 https://www.encodeproject.org/files/ENCFF981ZJS/@@download/ENCFF981ZJS.bigBed GRCh38 released antibody characterized with exemption ENCFF725HJH bigBed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF684TTF 11424032 ENCODE Processing Pipeline 8b9f5629e098e883e18611def2556479 https://www.encodeproject.org/files/ENCFF725HJH/@@download/ENCFF725HJH.bigBed GRCh38 released antibody characterized with exemption ENCFF167GXB bigBed narrowPeak optimal idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF654KVO 303687 ENCODE Processing Pipeline 8fcca7a4b2d79d1315593426d3efc1aa https://www.encodeproject.org/files/ENCFF167GXB/@@download/ENCFF167GXB.bigBed GRCh38 released antibody characterized with exemption ENCFF654KVO bed narrowPeak optimal idr thresholded peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2, 3 ENCFF073IQI, ENCFF414KWS, ENCFF419RSJ, ENCFF684TTF 130490 ENCODE Processing Pipeline 0e1f6bba6f37dcd7b8e3eef110fc5e9b https://www.encodeproject.org/files/ENCFF654KVO/@@download/ENCFF654KVO.bed.gz GRCh38 released antibody characterized with exemption ENCFF388ZHD fastq reads ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF606KRS 6908365036 Michael Snyder, Stanford 34af5eff73c9491414cd455b4af10906 SRA:SRR6213013 https://www.encodeproject.org/files/ENCFF388ZHD/@@download/ENCFF388ZHD.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF606KRS fastq reads ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF388ZHD 7307099036 Michael Snyder, Stanford 452138332cca5765a24d48f8c6ea5b3a SRA:SRR6213013 https://www.encodeproject.org/files/ENCFF606KRS/@@download/ENCFF606KRS.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF576BZL fastq reads ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF844WJN 2684981815 Michael Snyder, Stanford ee7f7d3312385c87059a5d5d9d09e104 https://www.encodeproject.org/files/ENCFF576BZL/@@download/ENCFF576BZL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF844WJN fastq reads ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF576BZL 2668986967 Michael Snyder, Stanford 631fea95a249a2982c9774d470bdb4ab https://www.encodeproject.org/files/ENCFF844WJN/@@download/ENCFF844WJN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF642JDC fastq reads ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF845RNP 3316282352 Michael Snyder, Stanford 32e3f4ad2316337fc0f1596075152bc9 SRA:SRR6213012 https://www.encodeproject.org/files/ENCFF642JDC/@@download/ENCFF642JDC.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF845RNP fastq reads ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF642JDC 2890587542 Michael Snyder, Stanford 2d21deef10ac926b6ada2241780c2925 SRA:SRR6213012 https://www.encodeproject.org/files/ENCFF845RNP/@@download/ENCFF845RNP.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF104QYO bam unfiltered alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 100 ENCFF642JDC, ENCFF807MUK, ENCFF845RNP 6171636848 ENCODE Processing Pipeline 5c5ce367772ce838d06f5c96f3a4c16b https://www.encodeproject.org/files/ENCFF104QYO/@@download/ENCFF104QYO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF596VZQ bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 100 ENCFF642JDC, ENCFF807MUK, ENCFF845RNP 5025705878 ENCODE Processing Pipeline 18768f7303114d3db14f59df349447bb https://www.encodeproject.org/files/ENCFF596VZQ/@@download/ENCFF596VZQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF799NHP bam unfiltered alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 100 ENCFF388ZHD, ENCFF606KRS, ENCFF807MUK 12645660673 ENCODE Processing Pipeline 1284498d8b39467f5df3560210afedea https://www.encodeproject.org/files/ENCFF799NHP/@@download/ENCFF799NHP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF479RQX bam unfiltered alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 100 ENCFF642JDC, ENCFF643CGH, ENCFF845RNP 6187258272 ENCODE Processing Pipeline 1feebb8a2802620c4454622e6a89a6cb https://www.encodeproject.org/files/ENCFF479RQX/@@download/ENCFF479RQX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF274SQL bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 100 ENCFF388ZHD, ENCFF606KRS, ENCFF807MUK 9851737924 ENCODE Processing Pipeline 652ae4ff1a42b162a879102a7853bf84 https://www.encodeproject.org/files/ENCFF274SQL/@@download/ENCFF274SQL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF121JNK bam unfiltered alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 100 ENCFF388ZHD, ENCFF606KRS, ENCFF643CGH 12663027451 ENCODE Processing Pipeline c18aa08af3e8712a68daeaa91b2b769e https://www.encodeproject.org/files/ENCFF121JNK/@@download/ENCFF121JNK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF228ZGU bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 100 ENCFF642JDC, ENCFF643CGH, ENCFF845RNP 5038148705 ENCODE Processing Pipeline 23a5996701ebc760a1199ce9851ce624 https://www.encodeproject.org/files/ENCFF228ZGU/@@download/ENCFF228ZGU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF106TAT bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 100 ENCFF388ZHD, ENCFF606KRS, ENCFF643CGH 9877696813 ENCODE Processing Pipeline 0da039e2da99715563e68d55bb7529b1 https://www.encodeproject.org/files/ENCFF106TAT/@@download/ENCFF106TAT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF684BLC bigWig signal p-value ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF228ZGU, ENCFF475DWJ, ENCFF621RXC 2169144424 ENCODE Processing Pipeline fde51e6d80417880fb9e29191767c0d3 https://www.encodeproject.org/files/ENCFF684BLC/@@download/ENCFF684BLC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF198FRX bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF106TAT, ENCFF475DWJ, ENCFF621RXC 7277399 ENCODE Processing Pipeline d453b3c466416d1121f973832b80d0c0 https://www.encodeproject.org/files/ENCFF198FRX/@@download/ENCFF198FRX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF160MIA bigWig signal p-value ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF106TAT, ENCFF228ZGU, ENCFF475DWJ, ENCFF621RXC 4163644259 ENCODE Processing Pipeline d269cd4f3e6fc49b7b60d92fcf8785d5 https://www.encodeproject.org/files/ENCFF160MIA/@@download/ENCFF160MIA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF614DRO bigWig signal p-value ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF106TAT, ENCFF475DWJ, ENCFF621RXC 2569574388 ENCODE Processing Pipeline 8b9b0b41c04d44a1edebde66022bfd8c https://www.encodeproject.org/files/ENCFF614DRO/@@download/ENCFF614DRO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF114LWC bigWig fold change over control ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF106TAT, ENCFF475DWJ, ENCFF621RXC 2886473054 ENCODE Processing Pipeline 81ab0a74ef93c4d8944527a45787553d https://www.encodeproject.org/files/ENCFF114LWC/@@download/ENCFF114LWC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF410AXO bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF228ZGU, ENCFF475DWJ, ENCFF621RXC 6969846 ENCODE Processing Pipeline ca33480cb75431a9422a01f332a02f4c https://www.encodeproject.org/files/ENCFF410AXO/@@download/ENCFF410AXO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF399DVV bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF106TAT, ENCFF228ZGU, ENCFF475DWJ, ENCFF621RXC 7330151 ENCODE Processing Pipeline 844b1c239a4c7c803e23873fac67615b https://www.encodeproject.org/files/ENCFF399DVV/@@download/ENCFF399DVV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF916BOQ bigWig fold change over control ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF228ZGU, ENCFF475DWJ, ENCFF621RXC 2138961850 ENCODE Processing Pipeline 78b375cfda30ecc15a4426c0a5cf9102 https://www.encodeproject.org/files/ENCFF916BOQ/@@download/ENCFF916BOQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF015ETD bigWig fold change over control ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF106TAT, ENCFF228ZGU, ENCFF475DWJ, ENCFF621RXC 4617424110 ENCODE Processing Pipeline 0351ebfd490d790de1755253c8c2afa1 https://www.encodeproject.org/files/ENCFF015ETD/@@download/ENCFF015ETD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF188ETW bigBed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF198FRX 13465726 ENCODE Processing Pipeline c9a2c9f12a43c471fe88c21152d4b81b https://www.encodeproject.org/files/ENCFF188ETW/@@download/ENCFF188ETW.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF365WUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF145WWK 361562 ENCODE Processing Pipeline 037c8c517e36e87d52dbb3cd55f0f598 https://www.encodeproject.org/files/ENCFF365WUZ/@@download/ENCFF365WUZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF887DUY bed narrowPeak optimal idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF198FRX, ENCFF399DVV, ENCFF410AXO, ENCFF419RSJ 283119 ENCODE Processing Pipeline 338648bb1f9486e9d138ad9fc10a5a64 https://www.encodeproject.org/files/ENCFF887DUY/@@download/ENCFF887DUY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF722CWR bigBed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF410AXO 11386351 ENCODE Processing Pipeline a806d2d5c4bf057bf11b7f68c2ff0620 https://www.encodeproject.org/files/ENCFF722CWR/@@download/ENCFF722CWR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF315VMO bigBed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF399DVV 13506529 ENCODE Processing Pipeline c6b62a98022c2f384960e43190b8eb29 https://www.encodeproject.org/files/ENCFF315VMO/@@download/ENCFF315VMO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF145WWK bed narrowPeak conservative idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF198FRX, ENCFF399DVV, ENCFF410AXO, ENCFF419RSJ 161781 ENCODE Processing Pipeline 191b83b2b0dd0525851a2b177c254186 https://www.encodeproject.org/files/ENCFF145WWK/@@download/ENCFF145WWK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF648LMB bigBed narrowPeak optimal idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF887DUY 534587 ENCODE Processing Pipeline 8a64657bedb8890bb0a4bcb4557ddb63 https://www.encodeproject.org/files/ENCFF648LMB/@@download/ENCFF648LMB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF280UHO bigBed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF408HFJ 11383608 ENCODE Processing Pipeline 15aec5f08cdc862eb62545712524fe3d https://www.encodeproject.org/files/ENCFF280UHO/@@download/ENCFF280UHO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF580ZML bigBed narrowPeak conservative idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF852LYH 362342 ENCODE Processing Pipeline 285fe8895545bc56afbea1af45956587 https://www.encodeproject.org/files/ENCFF580ZML/@@download/ENCFF580ZML.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF940MMM bigWig signal p-value ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF172XZA, ENCFF274SQL, ENCFF843IXX 2356704031 ENCODE Processing Pipeline a30acc7f211760343e1ebe80b7d3845c https://www.encodeproject.org/files/ENCFF940MMM/@@download/ENCFF940MMM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF902YFC bigWig signal p-value ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF172XZA, ENCFF596VZQ, ENCFF843IXX 1789088638 ENCODE Processing Pipeline 1a97f054d889b5a6b1aa3cbe52aacf11 https://www.encodeproject.org/files/ENCFF902YFC/@@download/ENCFF902YFC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF251GMY bigBed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF447RTB 13448409 ENCODE Processing Pipeline dc6138260d4f237d63ea9a934822c79d https://www.encodeproject.org/files/ENCFF251GMY/@@download/ENCFF251GMY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF852LYH bed narrowPeak conservative idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF408HFJ, ENCFF447RTB, ENCFF968MAD 163413 ENCODE Processing Pipeline 3e95a0c800ec137d4347b99c7f0cfc2c https://www.encodeproject.org/files/ENCFF852LYH/@@download/ENCFF852LYH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF408HFJ bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF172XZA, ENCFF596VZQ, ENCFF843IXX 6969919 ENCODE Processing Pipeline 6da48c77f1a9638554e3c796ecfd53ea https://www.encodeproject.org/files/ENCFF408HFJ/@@download/ENCFF408HFJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF574YMJ bed narrowPeak optimal idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF408HFJ, ENCFF447RTB, ENCFF968MAD 283367 ENCODE Processing Pipeline 63c5da4fc3c3ea560d12f4ffd7394112 https://www.encodeproject.org/files/ENCFF574YMJ/@@download/ENCFF574YMJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF938OUY bigWig fold change over control ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF172XZA, ENCFF274SQL, ENCFF843IXX 4073026294 ENCODE Processing Pipeline 1909cc2b78660091f354a16a52a4371e https://www.encodeproject.org/files/ENCFF938OUY/@@download/ENCFF938OUY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF993RSW bigWig fold change over control ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF172XZA, ENCFF274SQL, ENCFF596VZQ, ENCFF843IXX 4559329119 ENCODE Processing Pipeline 46a8b53a85e4a7ae0c42d8f56d98eefe https://www.encodeproject.org/files/ENCFF993RSW/@@download/ENCFF993RSW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF637DHU bigBed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF968MAD 13488216 ENCODE Processing Pipeline 78f6ee040d7a09b097c1f6e7a3b70b42 https://www.encodeproject.org/files/ENCFF637DHU/@@download/ENCFF637DHU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF447RTB bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF172XZA, ENCFF274SQL, ENCFF843IXX 7270532 ENCODE Processing Pipeline 4898a94c71cd8c47b40ffc41fc9fff9b https://www.encodeproject.org/files/ENCFF447RTB/@@download/ENCFF447RTB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF968MAD bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF172XZA, ENCFF274SQL, ENCFF596VZQ, ENCFF843IXX 7321467 ENCODE Processing Pipeline fc3763e2b39f5508c23c9c8216dfe596 https://www.encodeproject.org/files/ENCFF968MAD/@@download/ENCFF968MAD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF278LOZ bigWig signal p-value ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF172XZA, ENCFF274SQL, ENCFF596VZQ, ENCFF843IXX 4111917651 ENCODE Processing Pipeline e361f11cb4d87b5cf728260818191905 https://www.encodeproject.org/files/ENCFF278LOZ/@@download/ENCFF278LOZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF700OFD bigWig fold change over control ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF172XZA, ENCFF596VZQ, ENCFF843IXX 2165919202 ENCODE Processing Pipeline 156edc180af650659229de1d68b625d7 https://www.encodeproject.org/files/ENCFF700OFD/@@download/ENCFF700OFD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF312IIZ bigBed narrowPeak optimal idr thresholded peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF574YMJ 532754 ENCODE Processing Pipeline 299026f3847978202631015f9a16027b https://www.encodeproject.org/files/ENCFF312IIZ/@@download/ENCFF312IIZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF638DGT fastq reads ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF426JLQ 2995913654 Michael Snyder, Stanford 9d15f66469938699ebcee818f735cb07 SRA:SRR6212632 https://www.encodeproject.org/files/ENCFF638DGT/@@download/ENCFF638DGT.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF426JLQ fastq reads ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF638DGT 2619835912 Michael Snyder, Stanford 965ad1b800fd5f5ca22a089d0c10e688 SRA:SRR6212632 https://www.encodeproject.org/files/ENCFF426JLQ/@@download/ENCFF426JLQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF901MLH fastq reads ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF395NAD 3325845909 Michael Snyder, Stanford 98763b755c3466cef6ee2b92cb340434 SRA:SRR6212631 https://www.encodeproject.org/files/ENCFF901MLH/@@download/ENCFF901MLH.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF395NAD fastq reads ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF901MLH 4070832521 Michael Snyder, Stanford 00c84d25e1edf45d5076bf42e5659a48 SRA:SRR6212631 https://www.encodeproject.org/files/ENCFF395NAD/@@download/ENCFF395NAD.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF995QNS bam unfiltered alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF426JLQ, ENCFF638DGT, ENCFF643CGH 5718328245 ENCODE Processing Pipeline a21b7d52574bf6600a60aa48b72d2ce2 https://www.encodeproject.org/files/ENCFF995QNS/@@download/ENCFF995QNS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF382FXM bam unfiltered alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF426JLQ, ENCFF638DGT, ENCFF807MUK 5705096592 ENCODE Processing Pipeline ef3dfbdc7be7bba38b2779ab83c006bc https://www.encodeproject.org/files/ENCFF382FXM/@@download/ENCFF382FXM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF804NGY bam unfiltered alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF395NAD, ENCFF807MUK, ENCFF901MLH 7284339770 ENCODE Processing Pipeline 7cfa5fa870eae448af1f02d0972f5af1 https://www.encodeproject.org/files/ENCFF804NGY/@@download/ENCFF804NGY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF631MPQ bam unfiltered alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF395NAD, ENCFF643CGH, ENCFF901MLH 7299706645 ENCODE Processing Pipeline 724cd123b78a8efbb9d4c33279174690 https://www.encodeproject.org/files/ENCFF631MPQ/@@download/ENCFF631MPQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF219RUS bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF426JLQ, ENCFF638DGT, ENCFF643CGH 4621651948 ENCODE Processing Pipeline badc9ba75f8451fbe22af6fe0a484922 https://www.encodeproject.org/files/ENCFF219RUS/@@download/ENCFF219RUS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF952ZLK bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF426JLQ, ENCFF638DGT, ENCFF807MUK 4618589414 ENCODE Processing Pipeline 97ffe7292b9a1c3016c61fd95447411a https://www.encodeproject.org/files/ENCFF952ZLK/@@download/ENCFF952ZLK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF535YPL bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF395NAD, ENCFF807MUK, ENCFF901MLH 5831833730 ENCODE Processing Pipeline 80a490643908004365403c5de4095896 https://www.encodeproject.org/files/ENCFF535YPL/@@download/ENCFF535YPL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF686YXQ bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF395NAD, ENCFF643CGH, ENCFF901MLH 5836326124 ENCODE Processing Pipeline 5a192b00a0599c4d74a4c2f7603e4a2e https://www.encodeproject.org/files/ENCFF686YXQ/@@download/ENCFF686YXQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF859CYN bigWig signal p-value ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF952ZLK 1410014971 ENCODE Processing Pipeline 3bc31fb66284e0fc9d773d8bf6368cca https://www.encodeproject.org/files/ENCFF859CYN/@@download/ENCFF859CYN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF951AAT bigWig signal p-value ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF219RUS, ENCFF686YXQ, ENCFF810LLR 1924858605 ENCODE Processing Pipeline 58a1838a86ce04cec462bf5a39763582 https://www.encodeproject.org/files/ENCFF951AAT/@@download/ENCFF951AAT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF637CTG bigWig signal p-value ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF686YXQ, ENCFF810LLR 1884531860 ENCODE Processing Pipeline a9e72fc90ff08479232a61e61f0b8c6a https://www.encodeproject.org/files/ENCFF637CTG/@@download/ENCFF637CTG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF938MOZ bigWig signal p-value ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF535YPL 1834341652 ENCODE Processing Pipeline c3fc0575635bf3efce88e66ada3844f4 https://www.encodeproject.org/files/ENCFF938MOZ/@@download/ENCFF938MOZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF471AXD bigWig signal p-value ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF219RUS, ENCFF810LLR 1380228925 ENCODE Processing Pipeline a06c4d4d86e2420a553099a13397df7b https://www.encodeproject.org/files/ENCFF471AXD/@@download/ENCFF471AXD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF059VXZ bigWig signal p-value ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF535YPL, ENCFF952ZLK 1960275466 ENCODE Processing Pipeline 1f5be521d3c87804f037d2e9ebea5b25 https://www.encodeproject.org/files/ENCFF059VXZ/@@download/ENCFF059VXZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF951QIS bigWig fold change over control ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF219RUS, ENCFF810LLR 1646606081 ENCODE Processing Pipeline 17f7ec61f7155089ac4fb45b9d072ddf https://www.encodeproject.org/files/ENCFF951QIS/@@download/ENCFF951QIS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF789KBG bigWig fold change over control ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF686YXQ, ENCFF810LLR 1860029310 ENCODE Processing Pipeline 84c08acca5a98ac14206391d5c8ce5c2 https://www.encodeproject.org/files/ENCFF789KBG/@@download/ENCFF789KBG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF614XPW bigWig fold change over control ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF535YPL, ENCFF952ZLK 2384348165 ENCODE Processing Pipeline befc41ee4010a105497fb51c84ccf2ea https://www.encodeproject.org/files/ENCFF614XPW/@@download/ENCFF614XPW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF083SPA bigWig fold change over control ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF952ZLK 1653362009 ENCODE Processing Pipeline 6e97194114c46b01760a62951b37b9b8 https://www.encodeproject.org/files/ENCFF083SPA/@@download/ENCFF083SPA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF199KEJ bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF219RUS, ENCFF810LLR 6658346 ENCODE Processing Pipeline 6c964df324f61d11e90876c1b62020ff https://www.encodeproject.org/files/ENCFF199KEJ/@@download/ENCFF199KEJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF178MEC bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF535YPL, ENCFF952ZLK 7305061 ENCODE Processing Pipeline d2bd6312e23f2b24c394bf97805ce267 https://www.encodeproject.org/files/ENCFF178MEC/@@download/ENCFF178MEC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF576JCZ bigWig fold change over control ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF535YPL 1875426558 ENCODE Processing Pipeline c009d50452dd71865f42ded62445e3f4 https://www.encodeproject.org/files/ENCFF576JCZ/@@download/ENCFF576JCZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF899YMS bigWig fold change over control ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF219RUS, ENCFF686YXQ, ENCFF810LLR 2349493395 ENCODE Processing Pipeline 71eb5969c327d8b3eff8c14528ebbb19 https://www.encodeproject.org/files/ENCFF899YMS/@@download/ENCFF899YMS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF822VTG bigBed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF525TUF 10924011 ENCODE Processing Pipeline dcfd9297e8a8c624634aab9cae765a04 https://www.encodeproject.org/files/ENCFF822VTG/@@download/ENCFF822VTG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF455KIL bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF952ZLK 6651790 ENCODE Processing Pipeline 120cf01590b951289afc54857a6160cf https://www.encodeproject.org/files/ENCFF455KIL/@@download/ENCFF455KIL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF525TUF bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF535YPL 6931646 ENCODE Processing Pipeline 59e74a9b7a09376b96298628b69b2a93 https://www.encodeproject.org/files/ENCFF525TUF/@@download/ENCFF525TUF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF685LST bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF686YXQ, ENCFF810LLR 6939564 ENCODE Processing Pipeline 7cb2dd672146b6e52f21d66b7942fd2d https://www.encodeproject.org/files/ENCFF685LST/@@download/ENCFF685LST.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF559DOT bigBed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF199KEJ 11063637 ENCODE Processing Pipeline df88dbf720bc426f9d22dab2f5322e1d https://www.encodeproject.org/files/ENCFF559DOT/@@download/ENCFF559DOT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF633UHF bigBed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF455KIL 11045178 ENCODE Processing Pipeline 05402d6a23154283a14366d65487d117 https://www.encodeproject.org/files/ENCFF633UHF/@@download/ENCFF633UHF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF336SYE bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF219RUS, ENCFF686YXQ, ENCFF810LLR 7317751 ENCODE Processing Pipeline e72b55e6daf11f1c4d0f8fa501a1f7cb https://www.encodeproject.org/files/ENCFF336SYE/@@download/ENCFF336SYE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF679LQK bed narrowPeak conservative idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF178MEC, ENCFF455KIL, ENCFF525TUF 26656 ENCODE Processing Pipeline 7e67772f2656e621f031540940a3750f https://www.encodeproject.org/files/ENCFF679LQK/@@download/ENCFF679LQK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF130FBW bigBed narrowPeak conservative idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF679LQK 106745 ENCODE Processing Pipeline 4b92606d8f91a406a244884adf3ed090 https://www.encodeproject.org/files/ENCFF130FBW/@@download/ENCFF130FBW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF272DRN bigBed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF178MEC 11000815 ENCODE Processing Pipeline bb18096d4e11ce907e4fb6c27a690b8b https://www.encodeproject.org/files/ENCFF272DRN/@@download/ENCFF272DRN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF016SAS bigBed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF685LST 10941363 ENCODE Processing Pipeline 84687c747c09776dcc4aaf2a9bd3d4d7 https://www.encodeproject.org/files/ENCFF016SAS/@@download/ENCFF016SAS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF525ERS bigBed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF336SYE 11007954 ENCODE Processing Pipeline c41f3cab6cdcc9743945d984a00adcb0 https://www.encodeproject.org/files/ENCFF525ERS/@@download/ENCFF525ERS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF240VYE bed narrowPeak conservative idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF199KEJ, ENCFF336SYE, ENCFF419RSJ, ENCFF685LST 28827 ENCODE Processing Pipeline 666bc7dee77b7b2a197126f6d7cffacc https://www.encodeproject.org/files/ENCFF240VYE/@@download/ENCFF240VYE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF341FTO bed narrowPeak optimal idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF178MEC, ENCFF455KIL, ENCFF525TUF 41683 ENCODE Processing Pipeline 5cc8eac2432cfe85d3b31879fb620df8 https://www.encodeproject.org/files/ENCFF341FTO/@@download/ENCFF341FTO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF240OPH bigBed narrowPeak optimal idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF975JSZ 141983 ENCODE Processing Pipeline 8dc88f295216c1abcf48628430e402b9 https://www.encodeproject.org/files/ENCFF240OPH/@@download/ENCFF240OPH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF487EMJ bigBed narrowPeak conservative idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF240VYE 113438 ENCODE Processing Pipeline 46e214c8fb94550c76c715e8c036a570 https://www.encodeproject.org/files/ENCFF487EMJ/@@download/ENCFF487EMJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF886EHO bigBed narrowPeak optimal idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF341FTO 131053 ENCODE Processing Pipeline 493988d0a17b92c0b70e5039a414c14d https://www.encodeproject.org/files/ENCFF886EHO/@@download/ENCFF886EHO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF975JSZ bed narrowPeak optimal idr thresholded peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF199KEJ, ENCFF336SYE, ENCFF419RSJ, ENCFF685LST 46385 ENCODE Processing Pipeline 34e7ee56b65acf757f95913b45292689 https://www.encodeproject.org/files/ENCFF975JSZ/@@download/ENCFF975JSZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF170AOL fastq reads ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1282048117 Richard Myers, HAIB 7f74bb12c2f6f5aa6d2d2f01f4513554 SRA:SRR5331426 https://www.encodeproject.org/files/ENCFF170AOL/@@download/ENCFF170AOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF149FLF fastq reads ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1335946409 Richard Myers, HAIB 3f64b7ee701985595753036282fd10d5 SRA:SRR5331427 https://www.encodeproject.org/files/ENCFF149FLF/@@download/ENCFF149FLF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF504FEY bam unfiltered alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF170AOL, ENCFF807MUK 1514031915 ENCODE Processing Pipeline bc6a5dd78b0f360cf17a3942474251cd https://www.encodeproject.org/files/ENCFF504FEY/@@download/ENCFF504FEY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517DLT bam unfiltered alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF149FLF, ENCFF807MUK 1537077753 ENCODE Processing Pipeline f2d034c00a2135aa8ea69fb94a686548 https://www.encodeproject.org/files/ENCFF517DLT/@@download/ENCFF517DLT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF238YWI bam unfiltered alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF170AOL, ENCFF643CGH 1517192822 ENCODE Processing Pipeline 3a946a6954d12feeeeed6eb2a7744b05 https://www.encodeproject.org/files/ENCFF238YWI/@@download/ENCFF238YWI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF627NHL bam unfiltered alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF149FLF, ENCFF643CGH 1539972244 ENCODE Processing Pipeline 3fb795fbcbb1d1dd0d0f5ec5995999d0 https://www.encodeproject.org/files/ENCFF627NHL/@@download/ENCFF627NHL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF431XUQ bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF170AOL, ENCFF643CGH 1138828617 ENCODE Processing Pipeline db178e0d8dd1eb4470e8f6251e0a6ae0 https://www.encodeproject.org/files/ENCFF431XUQ/@@download/ENCFF431XUQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF176ZRH bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF170AOL, ENCFF807MUK 1138189694 ENCODE Processing Pipeline e7718ca50b5a77a3d9b9fd12e46f861f https://www.encodeproject.org/files/ENCFF176ZRH/@@download/ENCFF176ZRH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF380CUY bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF149FLF, ENCFF807MUK 1123743199 ENCODE Processing Pipeline 37bd780e62fd059ff472bb9d80d6ffb1 https://www.encodeproject.org/files/ENCFF380CUY/@@download/ENCFF380CUY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF847EMM bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF149FLF, ENCFF643CGH 1124266267 ENCODE Processing Pipeline 1d4b185eb44c70d0fbc3b32d0048dbdb https://www.encodeproject.org/files/ENCFF847EMM/@@download/ENCFF847EMM.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF858GVY bigWig signal p-value ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF431XUQ 599035861 ENCODE Processing Pipeline a4e869f79eba3dce5f633ff4b3700bb5 https://www.encodeproject.org/files/ENCFF858GVY/@@download/ENCFF858GVY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF658UDW bigWig signal p-value ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF431XUQ, ENCFF847EMM 674086564 ENCODE Processing Pipeline 9832f1096eb713ecec1beabd6d9bcdd8 https://www.encodeproject.org/files/ENCFF658UDW/@@download/ENCFF658UDW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF984KOZ bigWig signal p-value ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF847EMM 500046226 ENCODE Processing Pipeline edb5d5f17b4c5ad15042ae123730b966 https://www.encodeproject.org/files/ENCFF984KOZ/@@download/ENCFF984KOZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF675AAN bigWig fold change over control ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF431XUQ 464655415 ENCODE Processing Pipeline 12511a47ef41a77d01e235bb1cfeaccc https://www.encodeproject.org/files/ENCFF675AAN/@@download/ENCFF675AAN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF272BDX bigWig fold change over control ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF847EMM 456515708 ENCODE Processing Pipeline 1353ec6b7172f07e6718429fefa23737 https://www.encodeproject.org/files/ENCFF272BDX/@@download/ENCFF272BDX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF277QPV bigWig fold change over control ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF431XUQ, ENCFF847EMM 769901030 ENCODE Processing Pipeline 5dad4c4b56beb4970a3ea1ad718ee3fa https://www.encodeproject.org/files/ENCFF277QPV/@@download/ENCFF277QPV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF401OCK bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF431XUQ 5593968 ENCODE Processing Pipeline d3786f493fc3cc86348bfba396dce1ea https://www.encodeproject.org/files/ENCFF401OCK/@@download/ENCFF401OCK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF415HVP bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF847EMM 5811808 ENCODE Processing Pipeline 4a25720b2f2fa11e35d1b7fbc3e9fd42 https://www.encodeproject.org/files/ENCFF415HVP/@@download/ENCFF415HVP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF419DHT bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF431XUQ, ENCFF847EMM 6368970 ENCODE Processing Pipeline 8c906d8464dbae9094eea00c9ca1bd41 https://www.encodeproject.org/files/ENCFF419DHT/@@download/ENCFF419DHT.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF147HIB bigBed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF415HVP 13212342 ENCODE Processing Pipeline 610ab48a4a185652361912d7e320aff0 https://www.encodeproject.org/files/ENCFF147HIB/@@download/ENCFF147HIB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF838KWS bigBed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF401OCK 13146297 ENCODE Processing Pipeline 280e835a5a52d524f976e440a43fd0bb https://www.encodeproject.org/files/ENCFF838KWS/@@download/ENCFF838KWS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261IYR bigBed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419DHT 13260306 ENCODE Processing Pipeline 8d01e1f2639c0563160311f7cccd87c0 https://www.encodeproject.org/files/ENCFF261IYR/@@download/ENCFF261IYR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF928SXE bed narrowPeak conservative idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF401OCK, ENCFF415HVP, ENCFF419DHT, ENCFF419RSJ 611892 ENCODE Processing Pipeline 12930fab3c0bacbfbc1b6ad2efbc1277 https://www.encodeproject.org/files/ENCFF928SXE/@@download/ENCFF928SXE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF278ZNM bed narrowPeak optimal idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF401OCK, ENCFF415HVP, ENCFF419DHT, ENCFF419RSJ 671510 ENCODE Processing Pipeline 7e0159e6c6504797c7230c5d87b288a3 https://www.encodeproject.org/files/ENCFF278ZNM/@@download/ENCFF278ZNM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF966HEA bigBed narrowPeak conservative idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF928SXE 1231763 ENCODE Processing Pipeline d8d104b2e962fc93d07217493643f919 https://www.encodeproject.org/files/ENCFF966HEA/@@download/ENCFF966HEA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF246YII bigBed narrowPeak optimal idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF278ZNM 1322962 ENCODE Processing Pipeline f4f4c5b637edfb60def53eb277fdfaf4 https://www.encodeproject.org/files/ENCFF246YII/@@download/ENCFF246YII.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF219HSO bigWig signal p-value ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF176ZRH, ENCFF203ABR 1180744500 ENCODE Processing Pipeline fc358e76b46a85fa6aead59d7cac6838 https://www.encodeproject.org/files/ENCFF219HSO/@@download/ENCFF219HSO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF523UVW bigWig signal p-value ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF380CUY 1180758933 ENCODE Processing Pipeline d897a99a8071b496fe29bed11739f6c1 https://www.encodeproject.org/files/ENCFF523UVW/@@download/ENCFF523UVW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF232ESW bigWig fold change over control ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF176ZRH, ENCFF203ABR 891046002 ENCODE Processing Pipeline 59dc7fa5e261044b07c1229aff1f9bab https://www.encodeproject.org/files/ENCFF232ESW/@@download/ENCFF232ESW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF568BWK bigWig signal p-value ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF176ZRH, ENCFF203ABR, ENCFF380CUY 1407967500 ENCODE Processing Pipeline c2c90899fe825616027b1b247949d7e4 https://www.encodeproject.org/files/ENCFF568BWK/@@download/ENCFF568BWK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF421LRM bigWig fold change over control ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF380CUY 852033215 ENCODE Processing Pipeline 55bf2e614ae79a60ee7b54174c5d3717 https://www.encodeproject.org/files/ENCFF421LRM/@@download/ENCFF421LRM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF142JQU bigWig fold change over control ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF176ZRH, ENCFF203ABR, ENCFF380CUY 1347322501 ENCODE Processing Pipeline aad97c745c9be94e2a5729bd56fef659 https://www.encodeproject.org/files/ENCFF142JQU/@@download/ENCFF142JQU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF716YYO bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF380CUY 6163098 ENCODE Processing Pipeline 07dd9cd1f5045e0f059d031de28cae46 https://www.encodeproject.org/files/ENCFF716YYO/@@download/ENCFF716YYO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF918LPX bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF176ZRH, ENCFF203ABR 6209851 ENCODE Processing Pipeline 3c4914186e9741b352e5e1a081c4b8c2 https://www.encodeproject.org/files/ENCFF918LPX/@@download/ENCFF918LPX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045CXK bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF176ZRH, ENCFF203ABR, ENCFF380CUY 6677123 ENCODE Processing Pipeline ebc0878a0ec4de16519ceeb265b66bf6 https://www.encodeproject.org/files/ENCFF045CXK/@@download/ENCFF045CXK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616UPI bigBed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF716YYO 12995416 ENCODE Processing Pipeline 51ed136fc76271dbecd05049824e598f https://www.encodeproject.org/files/ENCFF616UPI/@@download/ENCFF616UPI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF602FLN bigBed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045CXK 13162431 ENCODE Processing Pipeline d772defde727b3d48f8792b3b31fd8d4 https://www.encodeproject.org/files/ENCFF602FLN/@@download/ENCFF602FLN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF245HZT bigBed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF918LPX 13223716 ENCODE Processing Pipeline 67abaf085b0b49c9c8932b752fcfddc0 https://www.encodeproject.org/files/ENCFF245HZT/@@download/ENCFF245HZT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF455XOE bed narrowPeak conservative idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF045CXK, ENCFF716YYO, ENCFF918LPX 606493 ENCODE Processing Pipeline 71a496bf1afac74724d68c6f13b49208 https://www.encodeproject.org/files/ENCFF455XOE/@@download/ENCFF455XOE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF823USP bed narrowPeak optimal idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF045CXK, ENCFF716YYO, ENCFF918LPX 653855 ENCODE Processing Pipeline e3e569c9f86d208e4facdfad87406b48 https://www.encodeproject.org/files/ENCFF823USP/@@download/ENCFF823USP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF709NBJ bigBed narrowPeak conservative idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF455XOE 1265980 ENCODE Processing Pipeline 52770844f709a73fe54872a6c5ea56a8 https://www.encodeproject.org/files/ENCFF709NBJ/@@download/ENCFF709NBJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF452FPL bigBed narrowPeak optimal idr thresholded peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF823USP 1337275 ENCODE Processing Pipeline a53599f4f268c59adc889bc322f8f66b https://www.encodeproject.org/files/ENCFF452FPL/@@download/ENCFF452FPL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF907HHY fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF237EAI 2873329450 Michael Snyder, Stanford 16fcec22af4a0f5323a367d552dbe47b SRA:SRR6214306 https://www.encodeproject.org/files/ENCFF907HHY/@@download/ENCFF907HHY.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF237EAI fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF907HHY 3310216178 Michael Snyder, Stanford 9b1083ac60834a1c347b2d448b9eb834 SRA:SRR6214306 https://www.encodeproject.org/files/ENCFF237EAI/@@download/ENCFF237EAI.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF608RBJ fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF870NUU 2697256746 Michael Snyder, Stanford 580b9fa1a4e5c392bb039dc75ebb4b04 SRA:SRR6214307 https://www.encodeproject.org/files/ENCFF608RBJ/@@download/ENCFF608RBJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF870NUU fastq reads ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF608RBJ 2721533371 Michael Snyder, Stanford 16ec96f41be4dec5430b56cfcfdce3d7 SRA:SRR6214307 https://www.encodeproject.org/files/ENCFF870NUU/@@download/ENCFF870NUU.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF190SRK bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF807MUK, ENCFF870NUU 5156059749 ENCODE Processing Pipeline de9d5070aad20d044ec6e94770cf31f7 https://www.encodeproject.org/files/ENCFF190SRK/@@download/ENCFF190SRK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF703YIF bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF807MUK, ENCFF907HHY 5851920984 ENCODE Processing Pipeline 6dd26b211ff42f8e311d9a50bad53d39 https://www.encodeproject.org/files/ENCFF703YIF/@@download/ENCFF703YIF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF635MJX bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF643CGH, ENCFF870NUU 5160887560 ENCODE Processing Pipeline bb59571121aacf25ebab0a36f5e514f2 https://www.encodeproject.org/files/ENCFF635MJX/@@download/ENCFF635MJX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF157MZW bam unfiltered alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF643CGH, ENCFF907HHY 5858291712 ENCODE Processing Pipeline bf325a933f8ac5f24694b2dc220b56e3 https://www.encodeproject.org/files/ENCFF157MZW/@@download/ENCFF157MZW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF466DBM bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF807MUK, ENCFF907HHY 4685546093 ENCODE Processing Pipeline 08e4455f00c73d3aced728b0a9adca63 https://www.encodeproject.org/files/ENCFF466DBM/@@download/ENCFF466DBM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF577SKC bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF643CGH, ENCFF907HHY 4691944629 ENCODE Processing Pipeline ad07f54fd39ab8dc1ff19325b0df71c3 https://www.encodeproject.org/files/ENCFF577SKC/@@download/ENCFF577SKC.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF593EWE bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF807MUK, ENCFF870NUU 4033549977 ENCODE Processing Pipeline 7f832029626014bd59b41d543849151e https://www.encodeproject.org/files/ENCFF593EWE/@@download/ENCFF593EWE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF252GCC bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF643CGH, ENCFF870NUU 4038531531 ENCODE Processing Pipeline 3b9e01759834231190af49b23416472a https://www.encodeproject.org/files/ENCFF252GCC/@@download/ENCFF252GCC.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF736WSI bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 6893404 ENCODE Processing Pipeline 252b55c4550ec6b08124dd53f6f0a2e4 https://www.encodeproject.org/files/ENCFF736WSI/@@download/ENCFF736WSI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF747QQE bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF589PUL 13227761 ENCODE Processing Pipeline 66058a6732972198b22c06fa581852da https://www.encodeproject.org/files/ENCFF747QQE/@@download/ENCFF747QQE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF378UWE bigBed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF513RIQ 783743 ENCODE Processing Pipeline f42badd111ffe85851e04ef24d888a50 https://www.encodeproject.org/files/ENCFF378UWE/@@download/ENCFF378UWE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF986KIH bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 1791689450 ENCODE Processing Pipeline 7e8122b99d3e8c41b70d067ff6321210 https://www.encodeproject.org/files/ENCFF986KIH/@@download/ENCFF986KIH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF376CMK bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF021SAT 13312390 ENCODE Processing Pipeline b0a58e07f4ce2d6201408ff567e7f46a https://www.encodeproject.org/files/ENCFF376CMK/@@download/ENCFF376CMK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF807UJN bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 1304442544 ENCODE Processing Pipeline 18d69801f771b88a9c4248562104078a https://www.encodeproject.org/files/ENCFF807UJN/@@download/ENCFF807UJN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF427RVD bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF466DBM, ENCFF592WAL, ENCFF593EWE, ENCFF901CND 1835812805 ENCODE Processing Pipeline 11d0da16d3729da4e793115116856fb2 https://www.encodeproject.org/files/ENCFF427RVD/@@download/ENCFF427RVD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF142VQQ bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 1865459873 ENCODE Processing Pipeline 33bb0d74d5bbfb1823eac7ad9ad33bfd https://www.encodeproject.org/files/ENCFF142VQQ/@@download/ENCFF142VQQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF998OVR bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF466DBM, ENCFF592WAL, ENCFF593EWE, ENCFF901CND 2359855282 ENCODE Processing Pipeline d3e25ec933f9d89cbe07e964f61a8e2d https://www.encodeproject.org/files/ENCFF998OVR/@@download/ENCFF998OVR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF357FTH bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF736WSI 13272512 ENCODE Processing Pipeline 6a81aa2b046344c1c0ab8f229870cc65 https://www.encodeproject.org/files/ENCFF357FTH/@@download/ENCFF357FTH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF244JWN bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 1334384565 ENCODE Processing Pipeline d8367d015c6d65eeb63ad6b97c0d8d21 https://www.encodeproject.org/files/ENCFF244JWN/@@download/ENCFF244JWN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF021SAT bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 7094220 ENCODE Processing Pipeline c0ae0e7431a531a017941e22c329a15d https://www.encodeproject.org/files/ENCFF021SAT/@@download/ENCFF021SAT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF589PUL bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF466DBM, ENCFF592WAL, ENCFF593EWE, ENCFF901CND 7302425 ENCODE Processing Pipeline a61019e264390503295090085647a3da https://www.encodeproject.org/files/ENCFF589PUL/@@download/ENCFF589PUL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF165XUL bed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021SAT, ENCFF589PUL, ENCFF736WSI 272201 ENCODE Processing Pipeline c0d41935971600e35134399ca56de319 https://www.encodeproject.org/files/ENCFF165XUL/@@download/ENCFF165XUL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF918SNN bigBed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF165XUL 586929 ENCODE Processing Pipeline ba34bc46ba180021514d85c9930a3a40 https://www.encodeproject.org/files/ENCFF918SNN/@@download/ENCFF918SNN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF513RIQ bed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021SAT, ENCFF589PUL, ENCFF736WSI 393714 ENCODE Processing Pipeline d44225226240074d5eaa115e9fe46731 https://www.encodeproject.org/files/ENCFF513RIQ/@@download/ENCFF513RIQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF488AES bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 1859325091 ENCODE Processing Pipeline c2d76bf9c776467b207f56536ebad818 https://www.encodeproject.org/files/ENCFF488AES/@@download/ENCFF488AES.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF632OKL bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF071XPM 13236764 ENCODE Processing Pipeline 899e237ee90625fb91a8b89414e2e203 https://www.encodeproject.org/files/ENCFF632OKL/@@download/ENCFF632OKL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF631CIU bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 1802726530 ENCODE Processing Pipeline 416085dd206e01639eb61694abd5d327 https://www.encodeproject.org/files/ENCFF631CIU/@@download/ENCFF631CIU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF568SOZ bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF252GCC, ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 2201972902 ENCODE Processing Pipeline 544e3d0c4ac74b176b51320b2f5e048f https://www.encodeproject.org/files/ENCFF568SOZ/@@download/ENCFF568SOZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF700YOH bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF252GCC, ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 2354204168 ENCODE Processing Pipeline 8c143cff58a0422bf8d6e70074d4c01c https://www.encodeproject.org/files/ENCFF700YOH/@@download/ENCFF700YOH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF281RZB bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 7097224 ENCODE Processing Pipeline 7bb7eb0e17e0464b24f46273ea6bf421 https://www.encodeproject.org/files/ENCFF281RZB/@@download/ENCFF281RZB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF851KJE bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF252GCC, ENCFF666ATR 6889845 ENCODE Processing Pipeline cc1a5950be48f7314a20fe1668c90e12 https://www.encodeproject.org/files/ENCFF851KJE/@@download/ENCFF851KJE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF232LTK bigWig fold change over control ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF252GCC, ENCFF666ATR 1286788700 ENCODE Processing Pipeline 6992f2de452cce3fc76b2f9fc43a200b https://www.encodeproject.org/files/ENCFF232LTK/@@download/ENCFF232LTK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF071XPM bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF252GCC, ENCFF322NTO, ENCFF577SKC, ENCFF666ATR 7307689 ENCODE Processing Pipeline b0ea5ec7da4275f8fd5346756b84a819 https://www.encodeproject.org/files/ENCFF071XPM/@@download/ENCFF071XPM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF421RSI bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF281RZB 13322441 ENCODE Processing Pipeline 53e6d3d1b66d995e66d7e6c4139363a2 https://www.encodeproject.org/files/ENCFF421RSI/@@download/ENCFF421RSI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF085OLL bigBed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF200SLC 797798 ENCODE Processing Pipeline 6764afa68d685e59a399ad27a7597c55 https://www.encodeproject.org/files/ENCFF085OLL/@@download/ENCFF085OLL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF892ZNV bigWig signal p-value ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF252GCC, ENCFF666ATR 1144052721 ENCODE Processing Pipeline caa541dc9555dac262dc82063e340984 https://www.encodeproject.org/files/ENCFF892ZNV/@@download/ENCFF892ZNV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF944XBK bigBed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF851KJE 13277153 ENCODE Processing Pipeline f39f168181d86be2fe2c9ccc80a1ec1b https://www.encodeproject.org/files/ENCFF944XBK/@@download/ENCFF944XBK.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF204RPR bed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF071XPM, ENCFF281RZB, ENCFF419RSJ, ENCFF851KJE 272205 ENCODE Processing Pipeline 1a485b08760b9079857e54f9257f77eb https://www.encodeproject.org/files/ENCFF204RPR/@@download/ENCFF204RPR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF371ADG bigBed narrowPeak conservative idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF204RPR 587790 ENCODE Processing Pipeline 5416cc5a67323d8f93177c557fc66b66 https://www.encodeproject.org/files/ENCFF371ADG/@@download/ENCFF371ADG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF200SLC bed narrowPeak optimal idr thresholded peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF071XPM, ENCFF281RZB, ENCFF419RSJ, ENCFF851KJE 402143 ENCODE Processing Pipeline 497113d1d2e932e9a95395c0aed4fa20 https://www.encodeproject.org/files/ENCFF200SLC/@@download/ENCFF200SLC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF208UBO bam unfiltered alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVR, ENCFF807MUK 1223331169 ENCODE Processing Pipeline d9db8c6ed209ebb0b75432daab94a528 https://www.encodeproject.org/files/ENCFF208UBO/@@download/ENCFF208UBO.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF932QJT bam unfiltered alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EVV, ENCFF807MUK 1368595331 ENCODE Processing Pipeline 2497cda54cff7c183bcd212ddb008bbf https://www.encodeproject.org/files/ENCFF932QJT/@@download/ENCFF932QJT.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF002EVR fastq reads ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 1 36 single-ended 984620326 Michael Snyder, Stanford 6c76cc06452a0bb080b9d2d699ebbec6 https://www.encodeproject.org/files/ENCFF002EVR/@@download/ENCFF002EVR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length experiment not submitted to GEO partially characterized antibody ENCFF002EVV fastq reads ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 1 36 single-ended 1098843918 Michael Snyder, Stanford 2a8eac390846ceef7f306b6452e06e2b https://www.encodeproject.org/files/ENCFF002EVV/@@download/ENCFF002EVV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length experiment not submitted to GEO partially characterized antibody ENCFF172WFR bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EVV, ENCFF807MUK 970167447 ENCODE Processing Pipeline 55e3c0bc237a8774081b4342eaf83a2a https://www.encodeproject.org/files/ENCFF172WFR/@@download/ENCFF172WFR.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF434WMV bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVR, ENCFF807MUK 867173967 ENCODE Processing Pipeline 570016836f1180f04a38aa31ad4a8d18 https://www.encodeproject.org/files/ENCFF434WMV/@@download/ENCFF434WMV.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF300YPM bigWig signal p-value ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF172WFR, ENCFF863VMN 559595575 ENCODE Processing Pipeline 7bf8fb45fe9e5401ee3577db9af89a84 https://www.encodeproject.org/files/ENCFF300YPM/@@download/ENCFF300YPM.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF787AUY bigWig fold change over control ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF172WFR, ENCFF863VMN 522780794 ENCODE Processing Pipeline 4722067276ac03efe032fe8f7e6be4ec https://www.encodeproject.org/files/ENCFF787AUY/@@download/ENCFF787AUY.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF382LLY bam unfiltered alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EVV, ENCFF643CGH 1375788649 ENCODE Processing Pipeline 045d0fac8e0756512b27b56590acc414 https://www.encodeproject.org/files/ENCFF382LLY/@@download/ENCFF382LLY.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF323FPN bam unfiltered alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVR, ENCFF643CGH 1228911550 ENCODE Processing Pipeline 21aec84d60a608980a9e1baad48757ee https://www.encodeproject.org/files/ENCFF323FPN/@@download/ENCFF323FPN.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF553ZKD bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVR, ENCFF643CGH 866730120 ENCODE Processing Pipeline e648f715cf070de8971f2101fb5ee499 https://www.encodeproject.org/files/ENCFF553ZKD/@@download/ENCFF553ZKD.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF350GBI bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EVV, ENCFF643CGH 969824559 ENCODE Processing Pipeline 39fb01c466c2df31ef1da18d091f178e https://www.encodeproject.org/files/ENCFF350GBI/@@download/ENCFF350GBI.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF727QUO bigWig signal p-value ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF350GBI, ENCFF511RLN 611559991 ENCODE Processing Pipeline 039369faec7cbc7db913fabd55f00701 https://www.encodeproject.org/files/ENCFF727QUO/@@download/ENCFF727QUO.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF945MLO bigWig signal p-value ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF536CTV, ENCFF553ZKD 588590439 ENCODE Processing Pipeline 04fdec4a83e42b6f183c84e281ae40da https://www.encodeproject.org/files/ENCFF945MLO/@@download/ENCFF945MLO.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF112NLV bigWig signal p-value ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF350GBI, ENCFF511RLN, ENCFF536CTV, ENCFF553ZKD 1075504541 ENCODE Processing Pipeline 8fb5fbfcf54a0ec41c0dba5da15038e8 https://www.encodeproject.org/files/ENCFF112NLV/@@download/ENCFF112NLV.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF382TAO bigWig fold change over control ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF350GBI, ENCFF511RLN 534806428 ENCODE Processing Pipeline e6fa93372d192cd06a68ab4febb4b214 https://www.encodeproject.org/files/ENCFF382TAO/@@download/ENCFF382TAO.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF744JDI bigWig fold change over control ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF536CTV, ENCFF553ZKD 454162141 ENCODE Processing Pipeline 94f399efad9760c2381f66415b618765 https://www.encodeproject.org/files/ENCFF744JDI/@@download/ENCFF744JDI.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF869EQY bigWig fold change over control ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF350GBI, ENCFF511RLN, ENCFF536CTV, ENCFF553ZKD 1075562353 ENCODE Processing Pipeline 9060902b9276b29dead322d24bf78546 https://www.encodeproject.org/files/ENCFF869EQY/@@download/ENCFF869EQY.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF653DQM bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF350GBI, ENCFF511RLN 5078028 ENCODE Processing Pipeline f6a82d37293dcbc702e07f69cf8a7b5f https://www.encodeproject.org/files/ENCFF653DQM/@@download/ENCFF653DQM.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF032LRC bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF536CTV, ENCFF553ZKD 4907307 ENCODE Processing Pipeline a07d5f306ece9f3c45572828a376b56b https://www.encodeproject.org/files/ENCFF032LRC/@@download/ENCFF032LRC.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF725NKN bigBed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF653DQM 11212250 ENCODE Processing Pipeline 19ca466545ee6c7ae4ea75723e3cc66b https://www.encodeproject.org/files/ENCFF725NKN/@@download/ENCFF725NKN.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF967WOD bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF350GBI, ENCFF511RLN, ENCFF536CTV, ENCFF553ZKD 6322386 ENCODE Processing Pipeline f2666511ca62db9cc489f74032892b22 https://www.encodeproject.org/files/ENCFF967WOD/@@download/ENCFF967WOD.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF562GIE bigBed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF032LRC 11076734 ENCODE Processing Pipeline b7d97b9c63fe35d67fa57a5db0b60e46 https://www.encodeproject.org/files/ENCFF562GIE/@@download/ENCFF562GIE.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF487KTD bed narrowPeak conservative idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF032LRC, ENCFF419RSJ, ENCFF653DQM, ENCFF967WOD 140178 ENCODE Processing Pipeline 0ad5ec954b6cacc4590ab71cc1a76aee https://www.encodeproject.org/files/ENCFF487KTD/@@download/ENCFF487KTD.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF991KGA bigBed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF967WOD 13591151 ENCODE Processing Pipeline 9e8617a8483a1d5bb823aecf51ada153 https://www.encodeproject.org/files/ENCFF991KGA/@@download/ENCFF991KGA.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF746ENK bigBed narrowPeak conservative idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF487KTD 314019 ENCODE Processing Pipeline 583baf3d019d678fa035a9446c3a3e82 https://www.encodeproject.org/files/ENCFF746ENK/@@download/ENCFF746ENK.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF128TUP bed narrowPeak optimal idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF032LRC, ENCFF419RSJ, ENCFF653DQM, ENCFF967WOD 166563 ENCODE Processing Pipeline c643df9590eceb0e8778ef9522f449bb https://www.encodeproject.org/files/ENCFF128TUP/@@download/ENCFF128TUP.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF475CQD bigBed narrowPeak optimal idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF128TUP 353522 ENCODE Processing Pipeline 52c97da44c61d147436bda72baaf34dd https://www.encodeproject.org/files/ENCFF475CQD/@@download/ENCFF475CQD.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF741BUT bigWig signal p-value ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF434WMV, ENCFF817NEK 527981911 ENCODE Processing Pipeline 4ad03fedaf26c89524414d4dc7c98629 https://www.encodeproject.org/files/ENCFF741BUT/@@download/ENCFF741BUT.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF520ZLT bigWig signal p-value ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF172WFR, ENCFF434WMV, ENCFF817NEK, ENCFF863VMN 1075821012 ENCODE Processing Pipeline fafc0163caf1519818502086115e45ba https://www.encodeproject.org/files/ENCFF520ZLT/@@download/ENCFF520ZLT.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF930FSV bigWig fold change over control ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF172WFR, ENCFF434WMV, ENCFF817NEK, ENCFF863VMN 1076656242 ENCODE Processing Pipeline d6730305ec52aa25f4359ff42de4ebc5 https://www.encodeproject.org/files/ENCFF930FSV/@@download/ENCFF930FSV.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF704UKX bigWig fold change over control ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF434WMV, ENCFF817NEK 455315613 ENCODE Processing Pipeline 42545ad8e0b8111e991f3f415da8f166 https://www.encodeproject.org/files/ENCFF704UKX/@@download/ENCFF704UKX.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF771MQQ bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF172WFR, ENCFF863VMN 5083194 ENCODE Processing Pipeline 4b99e565fa0694f3cf163d2d13b50b86 https://www.encodeproject.org/files/ENCFF771MQQ/@@download/ENCFF771MQQ.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF476KWE bigBed narrowPeak optimal idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF244ORA 350254 ENCODE Processing Pipeline 3d53a0c8301d88ec781e90c770bec1be https://www.encodeproject.org/files/ENCFF476KWE/@@download/ENCFF476KWE.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF749DAY bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF434WMV, ENCFF817NEK 4929972 ENCODE Processing Pipeline 3b8c3d33e1caae806ca1df659f13255a https://www.encodeproject.org/files/ENCFF749DAY/@@download/ENCFF749DAY.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF338MRR bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF172WFR, ENCFF434WMV, ENCFF817NEK, ENCFF863VMN 6325818 ENCODE Processing Pipeline 29a6280aa2825aeafe453c53a36f2c70 https://www.encodeproject.org/files/ENCFF338MRR/@@download/ENCFF338MRR.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF314UVG bigBed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF771MQQ 11211025 ENCODE Processing Pipeline d3c10a2a179ca846614a41cb1898658b https://www.encodeproject.org/files/ENCFF314UVG/@@download/ENCFF314UVG.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF872DZG bigBed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF749DAY 11069735 ENCODE Processing Pipeline 3c0c01077abd55715634aecd9633841f https://www.encodeproject.org/files/ENCFF872DZG/@@download/ENCFF872DZG.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF556YKQ bigBed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF338MRR 13587924 ENCODE Processing Pipeline a411b055021452b1c7bee34d97b79d48 https://www.encodeproject.org/files/ENCFF556YKQ/@@download/ENCFF556YKQ.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF653JVV bed narrowPeak conservative idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF338MRR, ENCFF749DAY, ENCFF771MQQ 141732 ENCODE Processing Pipeline eaebecf1e47a1ae8579b391af4eabbfe https://www.encodeproject.org/files/ENCFF653JVV/@@download/ENCFF653JVV.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF353OQL bigBed narrowPeak conservative idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF653JVV 315189 ENCODE Processing Pipeline 78eb8219f1154b12fc5a39263fb06562 https://www.encodeproject.org/files/ENCFF353OQL/@@download/ENCFF353OQL.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF244ORA bed narrowPeak optimal idr thresholded peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF338MRR, ENCFF749DAY, ENCFF771MQQ 165448 ENCODE Processing Pipeline 0915fff499818a173ad96b6a1787bbb4 https://www.encodeproject.org/files/ENCFF244ORA/@@download/ENCFF244ORA.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF278POP fastq reads ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 1 76 single-ended 1855249298 Richard Myers, HAIB d16c864714a2afbebc9257a97336b446 https://www.encodeproject.org/files/ENCFF278POP/@@download/ENCFF278POP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF661IEZ bam unfiltered alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 76 ENCFF278POP, ENCFF643CGH 1984054275 ENCODE Processing Pipeline 8ace2e76ed781730393426335b4b2751 https://www.encodeproject.org/files/ENCFF661IEZ/@@download/ENCFF661IEZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF774YPR bam unfiltered alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 76 ENCFF278POP, ENCFF807MUK 1979788188 ENCODE Processing Pipeline 28619518d40fb466494c680fcd67d0de https://www.encodeproject.org/files/ENCFF774YPR/@@download/ENCFF774YPR.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF880OFW bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 76 ENCFF278POP, ENCFF643CGH 1542873046 ENCODE Processing Pipeline 02951a20c312ee4fda075e1e52a541ec https://www.encodeproject.org/files/ENCFF880OFW/@@download/ENCFF880OFW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF687QZJ bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 76 ENCFF278POP, ENCFF807MUK 1542241261 ENCODE Processing Pipeline b1463768631ec01433b202a27426d2d9 https://www.encodeproject.org/files/ENCFF687QZJ/@@download/ENCFF687QZJ.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF057ISV fastq reads ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 1 76 single-ended 2461443529 Richard Myers, HAIB 0a3c46e012dd0d3ce694c7e006762751 https://www.encodeproject.org/files/ENCFF057ISV/@@download/ENCFF057ISV.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF199DBR bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 76 ENCFF057ISV, ENCFF807MUK 2144396910 ENCODE Processing Pipeline 6871821beb0d3396d2cc035ed17920f6 https://www.encodeproject.org/files/ENCFF199DBR/@@download/ENCFF199DBR.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF312XVZ bam unfiltered alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 76 ENCFF057ISV, ENCFF643CGH 2845165522 ENCODE Processing Pipeline 3d1affb8efc69ff5cf32fc7715f83203 https://www.encodeproject.org/files/ENCFF312XVZ/@@download/ENCFF312XVZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF043URB bam unfiltered alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 76 ENCFF057ISV, ENCFF807MUK 2838808037 ENCODE Processing Pipeline 82c70aa412c1aefdca09ce14edbd2359 https://www.encodeproject.org/files/ENCFF043URB/@@download/ENCFF043URB.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF980FYC bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 76 ENCFF057ISV, ENCFF643CGH 2145487394 ENCODE Processing Pipeline 72ab9a7a3fa26b276ebbd69ffc99e6ff https://www.encodeproject.org/files/ENCFF980FYC/@@download/ENCFF980FYC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF420YRE bigWig signal p-value ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF880OFW 583555345 ENCODE Processing Pipeline 6268088a21109cc62b13f24b57c46f3a https://www.encodeproject.org/files/ENCFF420YRE/@@download/ENCFF420YRE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF783BZI bigWig signal p-value ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF199DBR 661127268 ENCODE Processing Pipeline e4ba9ee71504c3c74a7009e49a332437 https://www.encodeproject.org/files/ENCFF783BZI/@@download/ENCFF783BZI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF387TDC bigWig signal p-value ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF980FYC 657460509 ENCODE Processing Pipeline 7a791a904ab0e8fddd755394580d0e10 https://www.encodeproject.org/files/ENCFF387TDC/@@download/ENCFF387TDC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF425UEJ bigWig signal p-value ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF199DBR, ENCFF687QZJ 637449460 ENCODE Processing Pipeline 5441b9ee64bfad0f63e1c09d5a8083be https://www.encodeproject.org/files/ENCFF425UEJ/@@download/ENCFF425UEJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF313KLW bigWig fold change over control ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF687QZJ 535494176 ENCODE Processing Pipeline b0fb2459632759ceb277c19ce067dc18 https://www.encodeproject.org/files/ENCFF313KLW/@@download/ENCFF313KLW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF080TVI bigWig fold change over control ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF880OFW 555140512 ENCODE Processing Pipeline 64f9e08a5059acac442dd3258e7f9057 https://www.encodeproject.org/files/ENCFF080TVI/@@download/ENCFF080TVI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF466YWF bigWig signal p-value ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF687QZJ 491111023 ENCODE Processing Pipeline a6ca9d80de83d99bd2d17f4c758a2681 https://www.encodeproject.org/files/ENCFF466YWF/@@download/ENCFF466YWF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF787ZNQ bigWig signal p-value ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF880OFW, ENCFF980FYC 652564046 ENCODE Processing Pipeline dd7f6661587ce5d69f4533265c46ecba https://www.encodeproject.org/files/ENCFF787ZNQ/@@download/ENCFF787ZNQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF326XTL bigWig fold change over control ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF199DBR 693727329 ENCODE Processing Pipeline 3cce2f55ca44ee2caaf3b54b959c3aa4 https://www.encodeproject.org/files/ENCFF326XTL/@@download/ENCFF326XTL.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF088RRF bigWig fold change over control ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF980FYC 693689833 ENCODE Processing Pipeline 89000c6e3474762cd4f5ebbd6cb9e575 https://www.encodeproject.org/files/ENCFF088RRF/@@download/ENCFF088RRF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF123ASB bigBed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF726PBL 12908564 ENCODE Processing Pipeline b2c70b3a31c12d2e019ff46a6db26ea8 https://www.encodeproject.org/files/ENCFF123ASB/@@download/ENCFF123ASB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF726PBL bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF199DBR 6703817 ENCODE Processing Pipeline 41242e85b3d30743d779506d8c7c4e6c https://www.encodeproject.org/files/ENCFF726PBL/@@download/ENCFF726PBL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF845VKC bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF199DBR, ENCFF687QZJ 7054471 ENCODE Processing Pipeline ce91b7ccdecc5b8fbbafe78675089fd6 https://www.encodeproject.org/files/ENCFF845VKC/@@download/ENCFF845VKC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF488OHR bigBed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF845VKC 12841154 ENCODE Processing Pipeline 54e4aec9b68fd344bbe3796338440209 https://www.encodeproject.org/files/ENCFF488OHR/@@download/ENCFF488OHR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF541OOA bigWig fold change over control ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF199DBR, ENCFF687QZJ 1030014571 ENCODE Processing Pipeline d8629c23f33b7d1de6ea5402cd3796d9 https://www.encodeproject.org/files/ENCFF541OOA/@@download/ENCFF541OOA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF644ZTR bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF687QZJ 6498358 ENCODE Processing Pipeline 1595b9867b2ae9898a3e3b0888d798ad https://www.encodeproject.org/files/ENCFF644ZTR/@@download/ENCFF644ZTR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF674IMN bigBed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF644ZTR 13036742 ENCODE Processing Pipeline 8126ab6eedcb8635343f96213f0fba3b https://www.encodeproject.org/files/ENCFF674IMN/@@download/ENCFF674IMN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF992MSA bed narrowPeak conservative idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF001TDO, ENCFF644ZTR, ENCFF726PBL, ENCFF845VKC 328036 ENCODE Processing Pipeline 97a224b21b777a9c6db0c714e5c62210 https://www.encodeproject.org/files/ENCFF992MSA/@@download/ENCFF992MSA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF362WUO bed narrowPeak optimal idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF001TDO, ENCFF644ZTR, ENCFF726PBL, ENCFF845VKC 368119 ENCODE Processing Pipeline 1d05a1b40c43946dcca132013bafcce7 https://www.encodeproject.org/files/ENCFF362WUO/@@download/ENCFF362WUO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF353YGW bigBed narrowPeak optimal idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF362WUO 726166 ENCODE Processing Pipeline 86d2cf78556e461379f1a0785fab9df4 https://www.encodeproject.org/files/ENCFF353YGW/@@download/ENCFF353YGW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF041PBD bigWig fold change over control ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF880OFW, ENCFF980FYC 1045639708 ENCODE Processing Pipeline 11cdf653676b07a6618f7e12ece0e142 https://www.encodeproject.org/files/ENCFF041PBD/@@download/ENCFF041PBD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF432VPR bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF980FYC 6701372 ENCODE Processing Pipeline c1ab7d10f19f384997fffa6624def750 https://www.encodeproject.org/files/ENCFF432VPR/@@download/ENCFF432VPR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF598NCM bigBed narrowPeak conservative idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF992MSA 663708 ENCODE Processing Pipeline 5094bf6f785fca7ee71e244c35297730 https://www.encodeproject.org/files/ENCFF598NCM/@@download/ENCFF598NCM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF137BMC bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF880OFW 6437068 ENCODE Processing Pipeline d84257f0d7d8903e46d2e3d32a819b66 https://www.encodeproject.org/files/ENCFF137BMC/@@download/ENCFF137BMC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF853CZJ bigBed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF432VPR 12912944 ENCODE Processing Pipeline d46aeb38f2085b82017627c877e58255 https://www.encodeproject.org/files/ENCFF853CZJ/@@download/ENCFF853CZJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF485CYI bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF880OFW, ENCFF980FYC 7043358 ENCODE Processing Pipeline 14ca351861589bea48ed628f9cdc8258 https://www.encodeproject.org/files/ENCFF485CYI/@@download/ENCFF485CYI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF183TAC bigBed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF485CYI 12830864 ENCODE Processing Pipeline 0a864846c5093e5b680162d9ad0a39d9 https://www.encodeproject.org/files/ENCFF183TAC/@@download/ENCFF183TAC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF931ILD bed narrowPeak conservative idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF137BMC, ENCFF419RSJ, ENCFF432VPR, ENCFF485CYI 325139 ENCODE Processing Pipeline 53f4e52df6646b03229724836c589400 https://www.encodeproject.org/files/ENCFF931ILD/@@download/ENCFF931ILD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF974SLK bigBed narrowPeak optimal idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF330FGQ 728429 ENCODE Processing Pipeline eb4342849b4b348235dc5a04630a29a2 https://www.encodeproject.org/files/ENCFF974SLK/@@download/ENCFF974SLK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF330FGQ bed narrowPeak optimal idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF137BMC, ENCFF419RSJ, ENCFF432VPR, ENCFF485CYI 369013 ENCODE Processing Pipeline bbb20f88f188411e3493608dbb3c159b https://www.encodeproject.org/files/ENCFF330FGQ/@@download/ENCFF330FGQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF174NKR bigBed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF137BMC 13050428 ENCODE Processing Pipeline 6294ccc4298870ad91f3f3fec9b181e2 https://www.encodeproject.org/files/ENCFF174NKR/@@download/ENCFF174NKR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF723CCZ bigBed narrowPeak conservative idr thresholded peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF931ILD 660140 ENCODE Processing Pipeline 0e465d036d057b98f1007a3efdafc5d0 https://www.encodeproject.org/files/ENCFF723CCZ/@@download/ENCFF723CCZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF075NAH bam unfiltered alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 100 ENCFF630BDU, ENCFF807MUK, ENCFF847AWQ 4492067845 ENCODE Processing Pipeline 5c2cac2409f34454a6c3aa77c641cb60 https://www.encodeproject.org/files/ENCFF075NAH/@@download/ENCFF075NAH.bam hg19 released antibody characterized with exemption ENCFF149JPI bam unfiltered alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 100 ENCFF264ZQH, ENCFF807MUK, ENCFF998JJX 5027014002 ENCODE Processing Pipeline 105eb2c10792aeb3d260cd96a41edad6 https://www.encodeproject.org/files/ENCFF149JPI/@@download/ENCFF149JPI.bam hg19 released antibody characterized with exemption ENCFF630BDU fastq reads ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF847AWQ 2014557701 Michael Snyder, Stanford c6ef244bc30eed355bb4a609b8a1fc13 SRA:SRR5111977 https://www.encodeproject.org/files/ENCFF630BDU/@@download/ENCFF630BDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released antibody characterized with exemption ENCFF847AWQ fastq reads ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF630BDU 2066556583 Michael Snyder, Stanford 2ca5bba88874614b07c2b50d5d01f4f2 SRA:SRR5111977 https://www.encodeproject.org/files/ENCFF847AWQ/@@download/ENCFF847AWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released antibody characterized with exemption ENCFF998JJX fastq reads ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF264ZQH 2297103508 Michael Snyder, Stanford 0ba5c7de90f2549b8d2c1d4c9f17a416 SRA:SRR5111978 https://www.encodeproject.org/files/ENCFF998JJX/@@download/ENCFF998JJX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released antibody characterized with exemption ENCFF264ZQH fastq reads ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF998JJX 2245605630 Michael Snyder, Stanford 1c8fe17eefb40f8e6dae7c51a523bd11 SRA:SRR5111978 https://www.encodeproject.org/files/ENCFF264ZQH/@@download/ENCFF264ZQH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released antibody characterized with exemption ENCFF778MHV bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 100 ENCFF630BDU, ENCFF807MUK, ENCFF847AWQ 3646987895 ENCODE Processing Pipeline a9dd7fd8597a3ee199c4568d11389a9a https://www.encodeproject.org/files/ENCFF778MHV/@@download/ENCFF778MHV.bam hg19 released antibody characterized with exemption ENCFF517CCI bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 100 ENCFF264ZQH, ENCFF807MUK, ENCFF998JJX 4245405693 ENCODE Processing Pipeline 960149ead0da2609fc0aa9babaddb698 https://www.encodeproject.org/files/ENCFF517CCI/@@download/ENCFF517CCI.bam hg19 released antibody characterized with exemption ENCFF960YSF bigWig signal p-value ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF517CCI, ENCFF583FAG 1069654476 ENCODE Processing Pipeline 6a0c04f77d5da0d6101d4b83229f0229 https://www.encodeproject.org/files/ENCFF960YSF/@@download/ENCFF960YSF.bigWig hg19 released antibody characterized with exemption ENCFF728IXW bigWig signal p-value ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF049MPQ, ENCFF778MHV 969373377 ENCODE Processing Pipeline 16e2fd0ba8db4e6f67b2a05cab9c4c5b https://www.encodeproject.org/files/ENCFF728IXW/@@download/ENCFF728IXW.bigWig hg19 released antibody characterized with exemption ENCFF871SBQ bigWig signal p-value ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF049MPQ, ENCFF517CCI, ENCFF583FAG, ENCFF778MHV 1694675589 ENCODE Processing Pipeline bb1f3cab19a615660432567e45991e02 https://www.encodeproject.org/files/ENCFF871SBQ/@@download/ENCFF871SBQ.bigWig hg19 released antibody characterized with exemption ENCFF359GJA bigWig fold change over control ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF517CCI, ENCFF583FAG 1084859132 ENCODE Processing Pipeline 3b4d328e517d8dc452ef251b496bcc77 https://www.encodeproject.org/files/ENCFF359GJA/@@download/ENCFF359GJA.bigWig hg19 released antibody characterized with exemption ENCFF136NPS bigWig fold change over control ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF049MPQ, ENCFF778MHV 1022155594 ENCODE Processing Pipeline c9f334268cc299a287bdde344186ce37 https://www.encodeproject.org/files/ENCFF136NPS/@@download/ENCFF136NPS.bigWig hg19 released antibody characterized with exemption ENCFF862BEF bigWig fold change over control ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF049MPQ, ENCFF517CCI, ENCFF583FAG, ENCFF778MHV 1944875687 ENCODE Processing Pipeline 816d1950ea347a50768cb8f7052edc38 https://www.encodeproject.org/files/ENCFF862BEF/@@download/ENCFF862BEF.bigWig hg19 released antibody characterized with exemption ENCFF458XHM bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF049MPQ, ENCFF778MHV 6307940 ENCODE Processing Pipeline 00f2227c2eaa7b204dae32cbc33ff181 https://www.encodeproject.org/files/ENCFF458XHM/@@download/ENCFF458XHM.bed.gz hg19 released antibody characterized with exemption ENCFF623KZC bigBed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF458XHM 13296343 ENCODE Processing Pipeline 1d436a58b461bd75ec8cd69820e6177d https://www.encodeproject.org/files/ENCFF623KZC/@@download/ENCFF623KZC.bigBed hg19 released antibody characterized with exemption ENCFF493ZKZ bigBed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF824NFX 11120169 ENCODE Processing Pipeline 55b026d4c5b2905c4ccbe747cbb076e6 https://www.encodeproject.org/files/ENCFF493ZKZ/@@download/ENCFF493ZKZ.bigBed hg19 released antibody characterized with exemption ENCFF932LYV bigBed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF844ATW 13163982 ENCODE Processing Pipeline 472da8c3582f4e8a04dc67f3ee7df7a5 https://www.encodeproject.org/files/ENCFF932LYV/@@download/ENCFF932LYV.bigBed hg19 released antibody characterized with exemption ENCFF824NFX bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF517CCI, ENCFF583FAG 6211167 ENCODE Processing Pipeline 6e287b966c2ea7a889f418d0e1e64d97 https://www.encodeproject.org/files/ENCFF824NFX/@@download/ENCFF824NFX.bed.gz hg19 released antibody characterized with exemption ENCFF844ATW bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF049MPQ, ENCFF517CCI, ENCFF583FAG, ENCFF778MHV 7114983 ENCODE Processing Pipeline 0d475ec90ed02eb53dcc02d16092d76f https://www.encodeproject.org/files/ENCFF844ATW/@@download/ENCFF844ATW.bed.gz hg19 released antibody characterized with exemption ENCFF037NWE bed narrowPeak conservative idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF458XHM, ENCFF824NFX, ENCFF844ATW 93043 ENCODE Processing Pipeline 9fe57c19a3aa745dace005a6ebeb02a8 https://www.encodeproject.org/files/ENCFF037NWE/@@download/ENCFF037NWE.bed.gz hg19 released antibody characterized with exemption ENCFF162RSN bed narrowPeak optimal idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF458XHM, ENCFF824NFX, ENCFF844ATW 146581 ENCODE Processing Pipeline 7926bf331b2624cf38b2085c98494160 https://www.encodeproject.org/files/ENCFF162RSN/@@download/ENCFF162RSN.bed.gz hg19 released antibody characterized with exemption ENCFF993PXH bigBed narrowPeak conservative idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF037NWE 257873 ENCODE Processing Pipeline 988eede4d7f764fc3d51e777dbb19659 https://www.encodeproject.org/files/ENCFF993PXH/@@download/ENCFF993PXH.bigBed hg19 released antibody characterized with exemption ENCFF430CTY bigBed narrowPeak optimal idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF162RSN 352195 ENCODE Processing Pipeline 3f92eebc1c53acc152700e099d31a684 https://www.encodeproject.org/files/ENCFF430CTY/@@download/ENCFF430CTY.bigBed hg19 released antibody characterized with exemption ENCFF862RZJ bam unfiltered alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 100 ENCFF630BDU, ENCFF643CGH, ENCFF847AWQ 4499042145 ENCODE Processing Pipeline 366d17969a6de8534a142debaa8ef52e https://www.encodeproject.org/files/ENCFF862RZJ/@@download/ENCFF862RZJ.bam GRCh38 released antibody characterized with exemption ENCFF302LHZ bam unfiltered alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 100 ENCFF264ZQH, ENCFF643CGH, ENCFF998JJX 5037010986 ENCODE Processing Pipeline 144e3e7c9a1ca2c052a239fce92cf66e https://www.encodeproject.org/files/ENCFF302LHZ/@@download/ENCFF302LHZ.bam GRCh38 released antibody characterized with exemption ENCFF037WYA bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 100 ENCFF630BDU, ENCFF643CGH, ENCFF847AWQ 3651354002 ENCODE Processing Pipeline 9856eee64a54639925fa64f1f5f779e8 https://www.encodeproject.org/files/ENCFF037WYA/@@download/ENCFF037WYA.bam GRCh38 released antibody characterized with exemption ENCFF745LPJ bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 100 ENCFF264ZQH, ENCFF643CGH, ENCFF998JJX 4251741481 ENCODE Processing Pipeline 7eb2f162a1c1296a2d50276e316383b8 https://www.encodeproject.org/files/ENCFF745LPJ/@@download/ENCFF745LPJ.bam GRCh38 released antibody characterized with exemption ENCFF019UEE bigWig signal p-value ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF426RDP, ENCFF745LPJ 948615363 ENCODE Processing Pipeline de59d3965b2b9386dc26fc131a30ba71 https://www.encodeproject.org/files/ENCFF019UEE/@@download/ENCFF019UEE.bigWig GRCh38 released antibody characterized with exemption ENCFF911JLE bigWig signal p-value ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF037WYA, ENCFF291AFY 908117445 ENCODE Processing Pipeline 1f56b0f8e01b3de4f5d9e3cc9bcf52f7 https://www.encodeproject.org/files/ENCFF911JLE/@@download/ENCFF911JLE.bigWig GRCh38 released antibody characterized with exemption ENCFF178LOZ bigWig signal p-value ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF037WYA, ENCFF291AFY, ENCFF426RDP, ENCFF745LPJ 1878085692 ENCODE Processing Pipeline 939c8ed135339690c0458b0b99af9a70 https://www.encodeproject.org/files/ENCFF178LOZ/@@download/ENCFF178LOZ.bigWig GRCh38 released antibody characterized with exemption ENCFF081EHS bigWig fold change over control ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF426RDP, ENCFF745LPJ 1097996842 ENCODE Processing Pipeline aa9a51752f75a5fed68ca40e9acf49d8 https://www.encodeproject.org/files/ENCFF081EHS/@@download/ENCFF081EHS.bigWig GRCh38 released antibody characterized with exemption ENCFF216VHP bigWig fold change over control ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF037WYA, ENCFF291AFY 1022976388 ENCODE Processing Pipeline 2696c8a5febcda271b0c1c3e028fa35a https://www.encodeproject.org/files/ENCFF216VHP/@@download/ENCFF216VHP.bigWig GRCh38 released antibody characterized with exemption ENCFF294VXO bigWig fold change over control ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF037WYA, ENCFF291AFY, ENCFF426RDP, ENCFF745LPJ 1945156250 ENCODE Processing Pipeline 03bc59df1359384d6ce0c09048bbec90 https://www.encodeproject.org/files/ENCFF294VXO/@@download/ENCFF294VXO.bigWig GRCh38 released antibody characterized with exemption ENCFF525UQQ bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF426RDP, ENCFF745LPJ 6049230 ENCODE Processing Pipeline 0efc85ddab27e46f50997b9ae87bef14 https://www.encodeproject.org/files/ENCFF525UQQ/@@download/ENCFF525UQQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF315PRS bigBed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF525UQQ 11124810 ENCODE Processing Pipeline f2cd7bdf53c7968757414c84eaaff62c https://www.encodeproject.org/files/ENCFF315PRS/@@download/ENCFF315PRS.bigBed GRCh38 released antibody characterized with exemption ENCFF788ZVV bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF037WYA, ENCFF291AFY 6138730 ENCODE Processing Pipeline 52ddb007620d76192a6f644d8b2492e3 https://www.encodeproject.org/files/ENCFF788ZVV/@@download/ENCFF788ZVV.bed.gz GRCh38 released antibody characterized with exemption ENCFF935FQO bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF037WYA, ENCFF291AFY, ENCFF426RDP, ENCFF745LPJ 7093790 ENCODE Processing Pipeline 6b9a6fbb9e6fc89e9b151230f42db373 https://www.encodeproject.org/files/ENCFF935FQO/@@download/ENCFF935FQO.bed.gz GRCh38 released antibody characterized with exemption ENCFF433HTY bigBed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF788ZVV 13301982 ENCODE Processing Pipeline 5ebe4ae5cd3cceaad074eeaa50fe5fa6 https://www.encodeproject.org/files/ENCFF433HTY/@@download/ENCFF433HTY.bigBed GRCh38 released antibody characterized with exemption ENCFF856LBK bed narrowPeak conservative idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF525UQQ, ENCFF788ZVV, ENCFF935FQO 99503 ENCODE Processing Pipeline 6035088c6f255f76cdd826d5108c3916 https://www.encodeproject.org/files/ENCFF856LBK/@@download/ENCFF856LBK.bed.gz GRCh38 released antibody characterized with exemption ENCFF115UYF bigBed narrowPeak conservative idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF856LBK 268891 ENCODE Processing Pipeline 82907bdfd45ec570647636bd1a97e05e https://www.encodeproject.org/files/ENCFF115UYF/@@download/ENCFF115UYF.bigBed GRCh38 released antibody characterized with exemption ENCFF674MQR bigBed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF935FQO 13177078 ENCODE Processing Pipeline 555b4dd513df981ccceccf00cbf198d9 https://www.encodeproject.org/files/ENCFF674MQR/@@download/ENCFF674MQR.bigBed GRCh38 released antibody characterized with exemption ENCFF541HRT bed narrowPeak optimal idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF525UQQ, ENCFF788ZVV, ENCFF935FQO 152057 ENCODE Processing Pipeline 82959b70617179f534548b6dc0382f74 https://www.encodeproject.org/files/ENCFF541HRT/@@download/ENCFF541HRT.bed.gz GRCh38 released antibody characterized with exemption ENCFF940XUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF541HRT 360622 ENCODE Processing Pipeline 7274ed7ab1996625d18fedcc47f5f645 https://www.encodeproject.org/files/ENCFF940XUQ/@@download/ENCFF940XUQ.bigBed GRCh38 released antibody characterized with exemption ENCFF348HJC fastq reads ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 1 50 single-ended 2278530743 Richard Myers, HAIB a98eac0d9f42f0e0a9d1925b70625059 SRA:SRR5338919 https://www.encodeproject.org/files/ENCFF348HJC/@@download/ENCFF348HJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF768KAE fastq reads ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 1 50 single-ended 2084865160 Richard Myers, HAIB 17363d0e9ec712cfea0d749bb27f05ae SRA:SRR5338918 https://www.encodeproject.org/files/ENCFF768KAE/@@download/ENCFF768KAE.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF310ION bam unfiltered alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643CGH, ENCFF768KAE 2637666419 ENCODE Processing Pipeline f4c9eaeb25cfe17bb797f76fb2d39e73 https://www.encodeproject.org/files/ENCFF310ION/@@download/ENCFF310ION.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF265DXN bam unfiltered alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 50 ENCFF768KAE, ENCFF807MUK 2624495766 ENCODE Processing Pipeline 0adab86779cd66fd98487f3c70fed29c https://www.encodeproject.org/files/ENCFF265DXN/@@download/ENCFF265DXN.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF434YLV bam unfiltered alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 50 ENCFF348HJC, ENCFF643CGH 2868295678 ENCODE Processing Pipeline caa9e364fb3d4762faedcc7554080123 https://www.encodeproject.org/files/ENCFF434YLV/@@download/ENCFF434YLV.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF530GUM bam unfiltered alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 50 ENCFF348HJC, ENCFF807MUK 2853428824 ENCODE Processing Pipeline 605e98db712a4b1e0d8c8c6911389bad https://www.encodeproject.org/files/ENCFF530GUM/@@download/ENCFF530GUM.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF879CUM bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643CGH, ENCFF768KAE 1943705307 ENCODE Processing Pipeline d711f398ddf4e9e6bd197a7dcbbda6a9 https://www.encodeproject.org/files/ENCFF879CUM/@@download/ENCFF879CUM.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF207GHC bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 50 ENCFF348HJC, ENCFF643CGH 2065635913 ENCODE Processing Pipeline 49f71b47d98cf2c8795fa87303644465 https://www.encodeproject.org/files/ENCFF207GHC/@@download/ENCFF207GHC.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF629YQB bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 50 ENCFF348HJC, ENCFF807MUK 2065181109 ENCODE Processing Pipeline 75a457e2196b9c0c13b827ca87ec948f https://www.encodeproject.org/files/ENCFF629YQB/@@download/ENCFF629YQB.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF468OBD bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 50 ENCFF768KAE, ENCFF807MUK 1943264764 ENCODE Processing Pipeline f7ce4215b21b56fed3f438a9a44662a8 https://www.encodeproject.org/files/ENCFF468OBD/@@download/ENCFF468OBD.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF976PZR bigWig signal p-value ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF023YTY, ENCFF468OBD 469740887 ENCODE Processing Pipeline 1e5f0796d4318b6b50157f8622f050f5 https://www.encodeproject.org/files/ENCFF976PZR/@@download/ENCFF976PZR.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF921IRV bigWig signal p-value ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF023YTY, ENCFF629YQB 452016123 ENCODE Processing Pipeline c70afaccc1ce7af70e3e5fde5b6cf516 https://www.encodeproject.org/files/ENCFF921IRV/@@download/ENCFF921IRV.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF563ZIL bigWig fold change over control ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF023YTY, ENCFF629YQB 775270439 ENCODE Processing Pipeline 6f12ec4a8ac3dfdbd57618ffce15be44 https://www.encodeproject.org/files/ENCFF563ZIL/@@download/ENCFF563ZIL.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF730EXE bigBed narrowPeak conservative idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF421ZII 1701957 ENCODE Processing Pipeline ddcd188ac2373e76819c1b5275b0d7a9 https://www.encodeproject.org/files/ENCFF730EXE/@@download/ENCFF730EXE.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF211XLF bigBed narrowPeak optimal idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF624SFC 1739582 ENCODE Processing Pipeline e56b86380291589fa61f499e1286e750 https://www.encodeproject.org/files/ENCFF211XLF/@@download/ENCFF211XLF.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF071LZO bigWig signal p-value ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF023YTY, ENCFF468OBD, ENCFF629YQB 440694051 ENCODE Processing Pipeline dd1fb675e9b9cfc0ee770208332bf1b9 https://www.encodeproject.org/files/ENCFF071LZO/@@download/ENCFF071LZO.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF583DLB bigWig fold change over control ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF023YTY, ENCFF468OBD 763139258 ENCODE Processing Pipeline 12f804b060e8b37ebc42476d2ce8633d https://www.encodeproject.org/files/ENCFF583DLB/@@download/ENCFF583DLB.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF008WCZ bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF023YTY, ENCFF629YQB 5888774 ENCODE Processing Pipeline 578a6084662c612d255a776121ced563 https://www.encodeproject.org/files/ENCFF008WCZ/@@download/ENCFF008WCZ.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF181DWV bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF023YTY, ENCFF468OBD, ENCFF629YQB 6771537 ENCODE Processing Pipeline 94e6166466cb1fa9d5fa9a99863c3cb7 https://www.encodeproject.org/files/ENCFF181DWV/@@download/ENCFF181DWV.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF960RHW bigBed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF145MQM 11671719 ENCODE Processing Pipeline 76231210a73d5928201ffbecfb2661c3 https://www.encodeproject.org/files/ENCFF960RHW/@@download/ENCFF960RHW.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF314GCG bigBed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF008WCZ 11806660 ENCODE Processing Pipeline ff3fdd0fdfa780b1741559abc21deef1 https://www.encodeproject.org/files/ENCFF314GCG/@@download/ENCFF314GCG.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF974QJE bigBed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF181DWV 11723103 ENCODE Processing Pipeline 9d01dc844908977681814ed6ec9f3580 https://www.encodeproject.org/files/ENCFF974QJE/@@download/ENCFF974QJE.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF624SFC bed narrowPeak optimal idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF008WCZ, ENCFF145MQM, ENCFF181DWV 1124836 ENCODE Processing Pipeline 086f8e2fb4fbd272c66b98b384a2ebf8 https://www.encodeproject.org/files/ENCFF624SFC/@@download/ENCFF624SFC.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF652BFV bigWig fold change over control ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF023YTY, ENCFF468OBD, ENCFF629YQB 1324036547 ENCODE Processing Pipeline ae14e299f280a4c9508ad81dc419acad https://www.encodeproject.org/files/ENCFF652BFV/@@download/ENCFF652BFV.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF145MQM bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF023YTY, ENCFF468OBD 5902959 ENCODE Processing Pipeline 77bd1b15ac7dd3e9806b3b2dc5284cbb https://www.encodeproject.org/files/ENCFF145MQM/@@download/ENCFF145MQM.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF421ZII bed narrowPeak conservative idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF008WCZ, ENCFF145MQM, ENCFF181DWV 1096168 ENCODE Processing Pipeline 53de18133ce94205b8fae6fa2cfd864d https://www.encodeproject.org/files/ENCFF421ZII/@@download/ENCFF421ZII.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF056EDB bigWig signal p-value ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF582CVJ, ENCFF879CUM 469795275 ENCODE Processing Pipeline 8f29e9dc70d110752d8101530544e70c https://www.encodeproject.org/files/ENCFF056EDB/@@download/ENCFF056EDB.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF217XPM bigWig signal p-value ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF207GHC, ENCFF582CVJ, ENCFF879CUM 440713501 ENCODE Processing Pipeline d5e3f11dbed712e7ca92067d6f898a07 https://www.encodeproject.org/files/ENCFF217XPM/@@download/ENCFF217XPM.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF679PFY bigWig signal p-value ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF207GHC, ENCFF582CVJ 452226093 ENCODE Processing Pipeline 2bd852d81ea22026b57ff88b4e4bfe4c https://www.encodeproject.org/files/ENCFF679PFY/@@download/ENCFF679PFY.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF220TCK bigWig fold change over control ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF582CVJ, ENCFF879CUM 766070484 ENCODE Processing Pipeline a81eb2ff9f18fe8f7718b2ea819df9bd https://www.encodeproject.org/files/ENCFF220TCK/@@download/ENCFF220TCK.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF422RII bigWig fold change over control ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF207GHC, ENCFF582CVJ 789624308 ENCODE Processing Pipeline b3fe655ff90d040fff44bad212760029 https://www.encodeproject.org/files/ENCFF422RII/@@download/ENCFF422RII.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF322CKA bigWig fold change over control ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF207GHC, ENCFF582CVJ, ENCFF879CUM 1320871434 ENCODE Processing Pipeline 667f55b6449e86e065281bc80b5cf18f https://www.encodeproject.org/files/ENCFF322CKA/@@download/ENCFF322CKA.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF715ZHP bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF582CVJ, ENCFF879CUM 5692870 ENCODE Processing Pipeline f480a7dd2e9174ac5d95ba61970a594f https://www.encodeproject.org/files/ENCFF715ZHP/@@download/ENCFF715ZHP.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF811CCD bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF207GHC, ENCFF582CVJ 5681813 ENCODE Processing Pipeline cc34b4f8bdaf62c357ce2d55342e88ba https://www.encodeproject.org/files/ENCFF811CCD/@@download/ENCFF811CCD.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF094PPY bigBed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF715ZHP 11652434 ENCODE Processing Pipeline 386c9ad908137951cb9629518b1d07f4 https://www.encodeproject.org/files/ENCFF094PPY/@@download/ENCFF094PPY.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF044HQV bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF207GHC, ENCFF582CVJ, ENCFF879CUM 6730595 ENCODE Processing Pipeline 28b452302347576b3190e0994b7e2971 https://www.encodeproject.org/files/ENCFF044HQV/@@download/ENCFF044HQV.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF332BAY bigBed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF811CCD 11786514 ENCODE Processing Pipeline 3699c01c2b13cada1698b039a61cfa4c https://www.encodeproject.org/files/ENCFF332BAY/@@download/ENCFF332BAY.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF168UMN bigBed narrowPeak conservative idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF659XDV 1738250 ENCODE Processing Pipeline 090b9b1fa87b309d527256298d725e28 https://www.encodeproject.org/files/ENCFF168UMN/@@download/ENCFF168UMN.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF751HOF bigBed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF044HQV 11806936 ENCODE Processing Pipeline 60333db486c6d430a49d540bfcb682a4 https://www.encodeproject.org/files/ENCFF751HOF/@@download/ENCFF751HOF.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF659XDV bed narrowPeak conservative idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF044HQV, ENCFF419RSJ, ENCFF715ZHP, ENCFF811CCD 1123619 ENCODE Processing Pipeline 8deaef51dc9421908e8be809a3ff0479 https://www.encodeproject.org/files/ENCFF659XDV/@@download/ENCFF659XDV.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF714AST bigBed narrowPeak optimal idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF685UQE 1775197 ENCODE Processing Pipeline 2757971bc2fbdc565d8e3c43fe3572a0 https://www.encodeproject.org/files/ENCFF714AST/@@download/ENCFF714AST.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF685UQE bed narrowPeak optimal idr thresholded peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF044HQV, ENCFF419RSJ, ENCFF715ZHP, ENCFF811CCD 1152225 ENCODE Processing Pipeline 1572fafb06abe1db5e3105487428d84e https://www.encodeproject.org/files/ENCFF685UQE/@@download/ENCFF685UQE.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF784EQQ fastq reads ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1873783381 Richard Myers, HAIB 19d276ae0c5f7ff6592e598356a7ea29 SRA:SRR5331451 https://www.encodeproject.org/files/ENCFF784EQQ/@@download/ENCFF784EQQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF908GXH fastq reads ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2081808087 Richard Myers, HAIB 119cfd62385de3ebece2675951ebd71b SRA:SRR5331452 https://www.encodeproject.org/files/ENCFF908GXH/@@download/ENCFF908GXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF590MFY bam unfiltered alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF908GXH 2360535446 ENCODE Processing Pipeline 00c7dfeb55bbebcadda5463d32bfeb0a https://www.encodeproject.org/files/ENCFF590MFY/@@download/ENCFF590MFY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF118WFV bam unfiltered alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF784EQQ 2200189924 ENCODE Processing Pipeline b65dc544c1be82b89b1eae3836f07f7e https://www.encodeproject.org/files/ENCFF118WFV/@@download/ENCFF118WFV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF079KMF bam unfiltered alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF784EQQ, ENCFF807MUK 2194176679 ENCODE Processing Pipeline 4c06691d4021710a1c3ca2a74dd31d50 https://www.encodeproject.org/files/ENCFF079KMF/@@download/ENCFF079KMF.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF664VVG bam unfiltered alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF908GXH 2365767587 ENCODE Processing Pipeline 2c62e47d3ef69ad80d8f203b2102f234 https://www.encodeproject.org/files/ENCFF664VVG/@@download/ENCFF664VVG.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF290GQR bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF784EQQ 1711479022 ENCODE Processing Pipeline 4bff585d0d380d3dd1a4b27cea964fa6 https://www.encodeproject.org/files/ENCFF290GQR/@@download/ENCFF290GQR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF369RCJ bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF784EQQ, ENCFF807MUK 1710160872 ENCODE Processing Pipeline 23bc8dd0b9399b4646c9c0e2acea7a92 https://www.encodeproject.org/files/ENCFF369RCJ/@@download/ENCFF369RCJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF778TOE bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF908GXH 1794815302 ENCODE Processing Pipeline de64af9df234476a37160412d7f760dd https://www.encodeproject.org/files/ENCFF778TOE/@@download/ENCFF778TOE.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF109RLL bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF908GXH 1795598977 ENCODE Processing Pipeline 0d812476bf5d5c717d998f693d758b21 https://www.encodeproject.org/files/ENCFF109RLL/@@download/ENCFF109RLL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF731ION bigWig signal p-value ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF109RLL 668889682 ENCODE Processing Pipeline 380d7369cab72ebbe4d12e8de984bcb7 https://www.encodeproject.org/files/ENCFF731ION/@@download/ENCFF731ION.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF997SFG bigWig signal p-value ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF290GQR 623418440 ENCODE Processing Pipeline 7322414890139a0791ceddb39a08ce08 https://www.encodeproject.org/files/ENCFF997SFG/@@download/ENCFF997SFG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF218WYC bigWig signal p-value ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF109RLL, ENCFF290GQR 655860957 ENCODE Processing Pipeline 253aedf16f0181f6d331c5858813e61c https://www.encodeproject.org/files/ENCFF218WYC/@@download/ENCFF218WYC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF938FCP bigWig fold change over control ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF109RLL 655222049 ENCODE Processing Pipeline 3f19f88d1a58b7771ac56f1abb5259ae https://www.encodeproject.org/files/ENCFF938FCP/@@download/ENCFF938FCP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF161LYV bigWig fold change over control ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF290GQR 599031218 ENCODE Processing Pipeline 18c229a4a7a3fc464a813311cbbb0402 https://www.encodeproject.org/files/ENCFF161LYV/@@download/ENCFF161LYV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501PAT bigWig fold change over control ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF109RLL, ENCFF290GQR 1030105541 ENCODE Processing Pipeline ed3624823d1575e19b5306cf46c41702 https://www.encodeproject.org/files/ENCFF501PAT/@@download/ENCFF501PAT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF865HMI bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF290GQR 5950684 ENCODE Processing Pipeline b132635c921dcb33c7cb9c66c63f06af https://www.encodeproject.org/files/ENCFF865HMI/@@download/ENCFF865HMI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF756IEC bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF109RLL 6464717 ENCODE Processing Pipeline a22fed79d3e3672c14c7dd3f1933727e https://www.encodeproject.org/files/ENCFF756IEC/@@download/ENCFF756IEC.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF843NDF bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF109RLL, ENCFF290GQR 6854653 ENCODE Processing Pipeline dacbfd6947c50ea4fdeea916322cd7db https://www.encodeproject.org/files/ENCFF843NDF/@@download/ENCFF843NDF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF059QCS bigBed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF865HMI 13214129 ENCODE Processing Pipeline 24bf4f9f54819b532f6c900a6366283f https://www.encodeproject.org/files/ENCFF059QCS/@@download/ENCFF059QCS.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF276OCH bigBed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF756IEC 12991591 ENCODE Processing Pipeline cb4e7800973f23f7464ee30a8ab6d37d https://www.encodeproject.org/files/ENCFF276OCH/@@download/ENCFF276OCH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF554BEA bigBed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF843NDF 13018549 ENCODE Processing Pipeline 0a9e6ec584ace8a52eb496d08e3d0da7 https://www.encodeproject.org/files/ENCFF554BEA/@@download/ENCFF554BEA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695HIB bed narrowPeak conservative idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF756IEC, ENCFF843NDF, ENCFF865HMI 377072 ENCODE Processing Pipeline ebe4769d723cac31de68a7e8d257d6ad https://www.encodeproject.org/files/ENCFF695HIB/@@download/ENCFF695HIB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782FTA bigBed narrowPeak conservative idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF695HIB 669202 ENCODE Processing Pipeline 438dc9f54582c065e88dea1147f5b4e3 https://www.encodeproject.org/files/ENCFF782FTA/@@download/ENCFF782FTA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF926VIT bed narrowPeak optimal idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF756IEC, ENCFF843NDF, ENCFF865HMI 504793 ENCODE Processing Pipeline 6208eb84b17b4b5652435eb841582be0 https://www.encodeproject.org/files/ENCFF926VIT/@@download/ENCFF926VIT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF154UIR bigBed narrowPeak optimal idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF926VIT 1030805 ENCODE Processing Pipeline ff7d74be84662c47f38d5414c4e906af https://www.encodeproject.org/files/ENCFF154UIR/@@download/ENCFF154UIR.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF556UBP bigWig signal p-value ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF369RCJ 1299431360 ENCODE Processing Pipeline 562b9e20b5267c6e3d1c08ec434cb2b0 https://www.encodeproject.org/files/ENCFF556UBP/@@download/ENCFF556UBP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF974UOH bigWig signal p-value ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF778TOE 1325453913 ENCODE Processing Pipeline bb22315774ed652b712cf408c6d9a4a3 https://www.encodeproject.org/files/ENCFF974UOH/@@download/ENCFF974UOH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935KTN bigWig signal p-value ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF369RCJ, ENCFF778TOE 1751822153 ENCODE Processing Pipeline b75735c2a5c8090fd3732961ce5a2d65 https://www.encodeproject.org/files/ENCFF935KTN/@@download/ENCFF935KTN.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF676OIW bigWig fold change over control ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF369RCJ 1083734446 ENCODE Processing Pipeline 3b340bff2f55dea0fc98e5cbd2c82348 https://www.encodeproject.org/files/ENCFF676OIW/@@download/ENCFF676OIW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF743FCF bigWig fold change over control ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF778TOE 1166405017 ENCODE Processing Pipeline 7a653a90b9f2370f62f69dc7ca59ceeb https://www.encodeproject.org/files/ENCFF743FCF/@@download/ENCFF743FCF.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF496WQN bigWig fold change over control ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF369RCJ, ENCFF778TOE 1695954279 ENCODE Processing Pipeline b1ec2c499c0413b9fb9d099558fb5ad4 https://www.encodeproject.org/files/ENCFF496WQN/@@download/ENCFF496WQN.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935DLZ bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF369RCJ 6528624 ENCODE Processing Pipeline f542afd8f9ef41d104caa9c6d1c39220 https://www.encodeproject.org/files/ENCFF935DLZ/@@download/ENCFF935DLZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF483QHT bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF778TOE 6812213 ENCODE Processing Pipeline 6d477a04bb9cc5498596c59cefd6922a https://www.encodeproject.org/files/ENCFF483QHT/@@download/ENCFF483QHT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF627RNW bigBed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF935DLZ 13249008 ENCODE Processing Pipeline 3cdf1f3ed89731bd1f202e913a7e2697 https://www.encodeproject.org/files/ENCFF627RNW/@@download/ENCFF627RNW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF528FVE bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF369RCJ, ENCFF778TOE 7025592 ENCODE Processing Pipeline 9c2e99b8b110f922e3f27e251fd2cb55 https://www.encodeproject.org/files/ENCFF528FVE/@@download/ENCFF528FVE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF986CEO bed narrowPeak conservative idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF483QHT, ENCFF528FVE, ENCFF935DLZ 377894 ENCODE Processing Pipeline 8fc2257a90279c749a19a95e22a960fb https://www.encodeproject.org/files/ENCFF986CEO/@@download/ENCFF986CEO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF593NKM bigBed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF483QHT 13005075 ENCODE Processing Pipeline 5c4b232fdc46741fb6e1bbaa4c4dd7d8 https://www.encodeproject.org/files/ENCFF593NKM/@@download/ENCFF593NKM.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF245FCX bigBed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF528FVE 13043585 ENCODE Processing Pipeline 52ca53554a729be3e676f12e19729799 https://www.encodeproject.org/files/ENCFF245FCX/@@download/ENCFF245FCX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF601ROG bigBed narrowPeak conservative idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF986CEO 688637 ENCODE Processing Pipeline cff68f979f96d2eb8fc11d32ac309559 https://www.encodeproject.org/files/ENCFF601ROG/@@download/ENCFF601ROG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF116GAH bed narrowPeak optimal idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF483QHT, ENCFF528FVE, ENCFF935DLZ 489976 ENCODE Processing Pipeline 1ee10f2b1a95191139ba1807d397608f https://www.encodeproject.org/files/ENCFF116GAH/@@download/ENCFF116GAH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF380CZX bigBed narrowPeak optimal idr thresholded peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF116GAH 1046623 ENCODE Processing Pipeline 24cedb279fc1fbeb8b614ed21d1446f1 https://www.encodeproject.org/files/ENCFF380CZX/@@download/ENCFF380CZX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF700NJD bam unfiltered alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 100 ENCFF029JZY, ENCFF455XVE, ENCFF807MUK 4798515578 ENCODE Processing Pipeline 19ca1255aac36de3db19c6b28ed2a841 https://www.encodeproject.org/files/ENCFF700NJD/@@download/ENCFF700NJD.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF698JSA bam unfiltered alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF018YWZ, ENCFF220PBO, ENCFF807MUK 5146797841 ENCODE Processing Pipeline 11e866f6259115e713afb27a6c0dc1ba https://www.encodeproject.org/files/ENCFF698JSA/@@download/ENCFF698JSA.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF455XVE fastq reads ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 1 100 paired-ended 1 ENCFF029JZY 2261386726 Michael Snyder, Stanford 577d7534525432120dc7a38d5b29b351 https://www.encodeproject.org/files/ENCFF455XVE/@@download/ENCFF455XVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF220PBO fastq reads ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 1 ENCFF018YWZ 2391364944 Michael Snyder, Stanford c15cb29a452df29c812b8fa3532174c5 https://www.encodeproject.org/files/ENCFF220PBO/@@download/ENCFF220PBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF018YWZ fastq reads ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 2 ENCFF220PBO 2403435875 Michael Snyder, Stanford 9b98c477b52c56527bb791f57a7142eb https://www.encodeproject.org/files/ENCFF018YWZ/@@download/ENCFF018YWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF029JZY fastq reads ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 1 100 paired-ended 2 ENCFF455XVE 2288990672 Michael Snyder, Stanford e77b68a81149c535b7cace00e39ef64e https://www.encodeproject.org/files/ENCFF029JZY/@@download/ENCFF029JZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF365ZKI bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF018YWZ, ENCFF220PBO, ENCFF807MUK 4156629063 ENCODE Processing Pipeline 115500dbaa6538a2fccb60a6afba957b https://www.encodeproject.org/files/ENCFF365ZKI/@@download/ENCFF365ZKI.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF670CVM bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 100 ENCFF029JZY, ENCFF455XVE, ENCFF807MUK 3496711699 ENCODE Processing Pipeline 356f37452b0c8ea2e209e4c12e4a81ea https://www.encodeproject.org/files/ENCFF670CVM/@@download/ENCFF670CVM.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF052SIA bigWig signal p-value ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF365ZKI, ENCFF581ZJL 1261581501 ENCODE Processing Pipeline 9e0babc9354eb0d8492643f82af70e7f https://www.encodeproject.org/files/ENCFF052SIA/@@download/ENCFF052SIA.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF123QPG bigWig signal p-value ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF670CVM 1105193752 ENCODE Processing Pipeline b7ab3ef0070ca465ff7a5a4c3ea8cb80 https://www.encodeproject.org/files/ENCFF123QPG/@@download/ENCFF123QPG.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF248FCU bigWig signal p-value ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF365ZKI, ENCFF581ZJL, ENCFF670CVM 1919392288 ENCODE Processing Pipeline 5ea712babe4d69f7b524fefa6b7d5c6e https://www.encodeproject.org/files/ENCFF248FCU/@@download/ENCFF248FCU.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF597NFW bigWig fold change over control ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF365ZKI, ENCFF581ZJL 1142388003 ENCODE Processing Pipeline 17876ec36ee116508f3711b989d1b7aa https://www.encodeproject.org/files/ENCFF597NFW/@@download/ENCFF597NFW.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF025KUF bigWig fold change over control ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF670CVM 1004449582 ENCODE Processing Pipeline bb0ce837b33daa967f56c5faa759359e https://www.encodeproject.org/files/ENCFF025KUF/@@download/ENCFF025KUF.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF652VBD bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF365ZKI, ENCFF581ZJL, ENCFF670CVM 7215542 ENCODE Processing Pipeline c890bbbbef855799f00e8a3d6f15464f https://www.encodeproject.org/files/ENCFF652VBD/@@download/ENCFF652VBD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF931TIP bigBed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF652VBD 13574141 ENCODE Processing Pipeline d8c818297fc6c92bbce4eb0a758fe057 https://www.encodeproject.org/files/ENCFF931TIP/@@download/ENCFF931TIP.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF935XHX bigWig fold change over control ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF365ZKI, ENCFF581ZJL, ENCFF670CVM 1997459496 ENCODE Processing Pipeline a78e37e2c7ee07576c7e8c969e4262a2 https://www.encodeproject.org/files/ENCFF935XHX/@@download/ENCFF935XHX.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF420EZA bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF670CVM 6776679 ENCODE Processing Pipeline fac5621ffb5d3033a828fd2b721573b0 https://www.encodeproject.org/files/ENCFF420EZA/@@download/ENCFF420EZA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF958FGE bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF365ZKI, ENCFF581ZJL 6801009 ENCODE Processing Pipeline 30f37a2484cc13307fd55e8a60edfd34 https://www.encodeproject.org/files/ENCFF958FGE/@@download/ENCFF958FGE.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF749XFI bigBed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF958FGE 13488622 ENCODE Processing Pipeline 5027d2e79d3bf7828f44a523e6322e3f https://www.encodeproject.org/files/ENCFF749XFI/@@download/ENCFF749XFI.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF815INM bigBed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF420EZA 13579974 ENCODE Processing Pipeline 2abe2a0e6ade9cfb0d04dc48078ff588 https://www.encodeproject.org/files/ENCFF815INM/@@download/ENCFF815INM.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF627TMJ bam unfiltered alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 100 ENCFF029JZY, ENCFF455XVE, ENCFF643CGH 4801155707 ENCODE Processing Pipeline 7cb77c28d5394163995e6b9804a301f9 https://www.encodeproject.org/files/ENCFF627TMJ/@@download/ENCFF627TMJ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF523DTE bam unfiltered alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF018YWZ, ENCFF220PBO, ENCFF643CGH 5151018091 ENCODE Processing Pipeline c2ec8fcc65f69f6d5770e25f587c7a60 https://www.encodeproject.org/files/ENCFF523DTE/@@download/ENCFF523DTE.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF778KCK bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 100 ENCFF029JZY, ENCFF455XVE, ENCFF643CGH 3498011102 ENCODE Processing Pipeline aa08eeacd3bac6e32d02a96601bb6a2c https://www.encodeproject.org/files/ENCFF778KCK/@@download/ENCFF778KCK.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF462VNN bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF018YWZ, ENCFF220PBO, ENCFF643CGH 4158571398 ENCODE Processing Pipeline e4138e68d5823438f0cbbf94580ad865 https://www.encodeproject.org/files/ENCFF462VNN/@@download/ENCFF462VNN.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF539XVT bigWig signal p-value ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF462VNN, ENCFF910IKB 1174101732 ENCODE Processing Pipeline ddadfdde99c3d7ae0770ac5b880ca4f1 https://www.encodeproject.org/files/ENCFF539XVT/@@download/ENCFF539XVT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF183CKB bigWig signal p-value ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF227IZS, ENCFF778KCK 1079747291 ENCODE Processing Pipeline f8e7138d433817ae0465298418e839df https://www.encodeproject.org/files/ENCFF183CKB/@@download/ENCFF183CKB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF165RDJ bigWig signal p-value ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF227IZS, ENCFF462VNN, ENCFF778KCK, ENCFF910IKB 1928563463 ENCODE Processing Pipeline 7a71379ad861a8cbe6254826f2975772 https://www.encodeproject.org/files/ENCFF165RDJ/@@download/ENCFF165RDJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF550DZF bigWig fold change over control ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF462VNN, ENCFF910IKB 1146375495 ENCODE Processing Pipeline 341f231a63931eff99372fc2b2b2c595 https://www.encodeproject.org/files/ENCFF550DZF/@@download/ENCFF550DZF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF391FON bigWig fold change over control ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF227IZS, ENCFF778KCK 987483566 ENCODE Processing Pipeline 56276678377244707d185a7e376664b4 https://www.encodeproject.org/files/ENCFF391FON/@@download/ENCFF391FON.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF808IWR bigWig fold change over control ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF227IZS, ENCFF462VNN, ENCFF778KCK, ENCFF910IKB 1998624852 ENCODE Processing Pipeline 640ea8e2d306d80ea990c81a6c116938 https://www.encodeproject.org/files/ENCFF808IWR/@@download/ENCFF808IWR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF459VCL bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF462VNN, ENCFF910IKB 6683163 ENCODE Processing Pipeline 94f4d8663fc334081461f05115fe493e https://www.encodeproject.org/files/ENCFF459VCL/@@download/ENCFF459VCL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF293MMH bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF227IZS, ENCFF778KCK 6647929 ENCODE Processing Pipeline 1343e1537c42da0b886f616cb5177533 https://www.encodeproject.org/files/ENCFF293MMH/@@download/ENCFF293MMH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF499VLE bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF227IZS, ENCFF462VNN, ENCFF778KCK, ENCFF910IKB 7184686 ENCODE Processing Pipeline 9b2ef373f831ce59ce17d6324c3e4442 https://www.encodeproject.org/files/ENCFF499VLE/@@download/ENCFF499VLE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF133CJA bigBed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 ENCFF459VCL 13484648 ENCODE Processing Pipeline bec1bb7df20df56313a1a213cea447f6 https://www.encodeproject.org/files/ENCFF133CJA/@@download/ENCFF133CJA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF790SBB bigBed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 ENCFF293MMH 13575328 ENCODE Processing Pipeline ab43c578b49707fef5e7a4d3737f9e0e https://www.encodeproject.org/files/ENCFF790SBB/@@download/ENCFF790SBB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF898DCS bigBed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF499VLE 13561731 ENCODE Processing Pipeline ab83b262fe112b8cf986fe57c35515c3 https://www.encodeproject.org/files/ENCFF898DCS/@@download/ENCFF898DCS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF105CED bed narrowPeak conservative idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF293MMH, ENCFF419RSJ, ENCFF459VCL, ENCFF499VLE 488079 ENCODE Processing Pipeline 93a089b15e99c1d90251125cefde18f1 https://www.encodeproject.org/files/ENCFF105CED/@@download/ENCFF105CED.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF662AIM bigBed narrowPeak conservative idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF105CED 882358 ENCODE Processing Pipeline a3f8a0f804bdaf2f278ca8a0075f6bd3 https://www.encodeproject.org/files/ENCFF662AIM/@@download/ENCFF662AIM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF262TMM bed narrowPeak optimal idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF293MMH, ENCFF419RSJ, ENCFF459VCL, ENCFF499VLE 610545 ENCODE Processing Pipeline d3dc06dc43c2790d9347623732a23475 https://www.encodeproject.org/files/ENCFF262TMM/@@download/ENCFF262TMM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF706NTF bigBed narrowPeak optimal idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF262TMM 1044701 ENCODE Processing Pipeline c928a1b5c7e1b30a1da6b5a15111ac19 https://www.encodeproject.org/files/ENCFF706NTF/@@download/ENCFF706NTF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF885PUG bigBed narrowPeak conservative idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF724TVS 803263 ENCODE Processing Pipeline 7087ebde233ee9779dddd310e599b797 https://www.encodeproject.org/files/ENCFF885PUG/@@download/ENCFF885PUG.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF724TVS bed narrowPeak conservative idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF001TDO, ENCFF420EZA, ENCFF652VBD, ENCFF958FGE 436659 ENCODE Processing Pipeline 278372172d93f2b73eb787113b8e58f8 https://www.encodeproject.org/files/ENCFF724TVS/@@download/ENCFF724TVS.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF534CPL bigBed narrowPeak optimal idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF497XOD 937450 ENCODE Processing Pipeline 6bbb95aea195152dab8c94c4886c26d3 https://www.encodeproject.org/files/ENCFF534CPL/@@download/ENCFF534CPL.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF497XOD bed narrowPeak optimal idr thresholded peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF001TDO, ENCFF420EZA, ENCFF652VBD, ENCFF958FGE 543857 ENCODE Processing Pipeline 0ee41a02ba74c38f647572359038656e https://www.encodeproject.org/files/ENCFF497XOD/@@download/ENCFF497XOD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF772XOL fastq reads ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2052561483 Richard Myers, HAIB 7ca4ec68cc5cf76741cc5493c8554e7f SRA:SRR5339198 https://www.encodeproject.org/files/ENCFF772XOL/@@download/ENCFF772XOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF257FGF fastq reads ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1592664435 Richard Myers, HAIB 1177fb09546359b83a3f78a87966e391 SRA:SRR5339199 https://www.encodeproject.org/files/ENCFF257FGF/@@download/ENCFF257FGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF005GGK bam unfiltered alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF772XOL 2379338935 ENCODE Processing Pipeline 89f0741e5705c40ac4307b812c983d27 https://www.encodeproject.org/files/ENCFF005GGK/@@download/ENCFF005GGK.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF175ENQ bam unfiltered alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF257FGF, ENCFF643CGH 1697577956 ENCODE Processing Pipeline 1c1133b26b6a9cc848d4186c2e1f4bbd https://www.encodeproject.org/files/ENCFF175ENQ/@@download/ENCFF175ENQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF301OFL bam unfiltered alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF257FGF, ENCFF807MUK 1694750901 ENCODE Processing Pipeline f35131a5d5d97f5ef58ea2b08ec78cc3 https://www.encodeproject.org/files/ENCFF301OFL/@@download/ENCFF301OFL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF197SIO bam unfiltered alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF772XOL, ENCFF807MUK 2373894236 ENCODE Processing Pipeline 43bac4414452889307a4dc9ad542494a https://www.encodeproject.org/files/ENCFF197SIO/@@download/ENCFF197SIO.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF584VTC bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF257FGF, ENCFF807MUK 1300329468 ENCODE Processing Pipeline cb4ea872ced408d65f6d33ec445b2b5a https://www.encodeproject.org/files/ENCFF584VTC/@@download/ENCFF584VTC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF088RTW bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF257FGF, ENCFF643CGH 1300735578 ENCODE Processing Pipeline 9fbca789b484a329bab1a78072441688 https://www.encodeproject.org/files/ENCFF088RTW/@@download/ENCFF088RTW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894JTR bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF772XOL 1741304919 ENCODE Processing Pipeline 4fe1c5f3c9a07fd3834195ebfd623e64 https://www.encodeproject.org/files/ENCFF894JTR/@@download/ENCFF894JTR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF079UPJ bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF772XOL, ENCFF807MUK 1740457709 ENCODE Processing Pipeline c15381f696699727cdeadcea5dca24dc https://www.encodeproject.org/files/ENCFF079UPJ/@@download/ENCFF079UPJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531UAK bigWig signal p-value ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF894JTR 607804470 ENCODE Processing Pipeline f2d2a9695a07698ac2c0423d1a2eded0 https://www.encodeproject.org/files/ENCFF531UAK/@@download/ENCFF531UAK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF718NCZ bigWig signal p-value ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF088RTW 506123231 ENCODE Processing Pipeline 141d9d230c2b90bf8ad3cb42a683680c https://www.encodeproject.org/files/ENCFF718NCZ/@@download/ENCFF718NCZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF408JUT bigWig signal p-value ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF088RTW, ENCFF894JTR 647688435 ENCODE Processing Pipeline b6ebc542d75fa60d8eee0e24cfd93443 https://www.encodeproject.org/files/ENCFF408JUT/@@download/ENCFF408JUT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF368NID bigWig fold change over control ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF894JTR 596455054 ENCODE Processing Pipeline ca8ca1775c7c2e63f79dec4d6b62448c https://www.encodeproject.org/files/ENCFF368NID/@@download/ENCFF368NID.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF430PKR bigWig fold change over control ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF088RTW 450805526 ENCODE Processing Pipeline 9efa35ca83f9f4be951d19de58e0654d https://www.encodeproject.org/files/ENCFF430PKR/@@download/ENCFF430PKR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF175PRM bigWig fold change over control ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF088RTW, ENCFF894JTR 892876256 ENCODE Processing Pipeline 0276a5be335fb6639d7a02a0d8442021 https://www.encodeproject.org/files/ENCFF175PRM/@@download/ENCFF175PRM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF940KEW bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF088RTW 6129997 ENCODE Processing Pipeline 918595ba7d785787dffe8c024649f03a https://www.encodeproject.org/files/ENCFF940KEW/@@download/ENCFF940KEW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF345JAM bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF894JTR 6581595 ENCODE Processing Pipeline eb3031206e90210a1f9d4cd5ee90d347 https://www.encodeproject.org/files/ENCFF345JAM/@@download/ENCFF345JAM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124SQG bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF088RTW, ENCFF894JTR 6939979 ENCODE Processing Pipeline a734c40a1488e3399d47944b39f93821 https://www.encodeproject.org/files/ENCFF124SQG/@@download/ENCFF124SQG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF620XDI bigBed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF345JAM 13010720 ENCODE Processing Pipeline 2d9b072516a1b080bbcd1ab1e3c79d53 https://www.encodeproject.org/files/ENCFF620XDI/@@download/ENCFF620XDI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF208LYX bigBed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF940KEW 13041312 ENCODE Processing Pipeline 8bfa50866945e9089cc63596b413a4e8 https://www.encodeproject.org/files/ENCFF208LYX/@@download/ENCFF208LYX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF853OMG bigBed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124SQG 12907378 ENCODE Processing Pipeline f37e11d1b47d151882f1f800411d8a89 https://www.encodeproject.org/files/ENCFF853OMG/@@download/ENCFF853OMG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405THA bed narrowPeak conservative idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124SQG, ENCFF345JAM, ENCFF419RSJ, ENCFF940KEW 340282 ENCODE Processing Pipeline 7694ffe68fdba01848aba7bf428ce815 https://www.encodeproject.org/files/ENCFF405THA/@@download/ENCFF405THA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782DLB bigBed narrowPeak conservative idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF405THA 682147 ENCODE Processing Pipeline e66f75ef043d3684929a5ce555b0b14c https://www.encodeproject.org/files/ENCFF782DLB/@@download/ENCFF782DLB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF673YDK bed narrowPeak optimal idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124SQG, ENCFF345JAM, ENCFF419RSJ, ENCFF940KEW 364742 ENCODE Processing Pipeline 82f0ee017c3c441a3b8de8a4866ed71c https://www.encodeproject.org/files/ENCFF673YDK/@@download/ENCFF673YDK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF284JCS bigBed narrowPeak optimal idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF673YDK 720516 ENCODE Processing Pipeline 441655e1bbc62c0f47e52f9684fe0416 https://www.encodeproject.org/files/ENCFF284JCS/@@download/ENCFF284JCS.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF955QUM bigWig signal p-value ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF079UPJ, ENCFF203ABR 1326667366 ENCODE Processing Pipeline 0f34d4672c4f68f209f70d3162da9d37 https://www.encodeproject.org/files/ENCFF955QUM/@@download/ENCFF955QUM.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF974PKV bigWig signal p-value ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF584VTC 1169760886 ENCODE Processing Pipeline 9b70eda2637a5f484056518be1b945aa https://www.encodeproject.org/files/ENCFF974PKV/@@download/ENCFF974PKV.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF706EXT bigWig signal p-value ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF079UPJ, ENCFF203ABR, ENCFF584VTC 1439780493 ENCODE Processing Pipeline 35c82610310dda66704182f3e4f7f599 https://www.encodeproject.org/files/ENCFF706EXT/@@download/ENCFF706EXT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF447EGU bigWig fold change over control ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF079UPJ, ENCFF203ABR 1196583948 ENCODE Processing Pipeline 3bcad3ea625d01ab9f703075ee17822c https://www.encodeproject.org/files/ENCFF447EGU/@@download/ENCFF447EGU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF520JGR bigWig fold change over control ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF584VTC 847045441 ENCODE Processing Pipeline a98267069152f5b6110de31ce575830c https://www.encodeproject.org/files/ENCFF520JGR/@@download/ENCFF520JGR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF874XIR bigWig fold change over control ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF079UPJ, ENCFF203ABR, ENCFF584VTC 1468432047 ENCODE Processing Pipeline 9ef8f0beaca2558b1f96106b5a2a2349 https://www.encodeproject.org/files/ENCFF874XIR/@@download/ENCFF874XIR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF187DLY bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF584VTC 6797422 ENCODE Processing Pipeline e100c3be710d0933684a970579295886 https://www.encodeproject.org/files/ENCFF187DLY/@@download/ENCFF187DLY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262AAT bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF079UPJ, ENCFF203ABR 7043889 ENCODE Processing Pipeline 727707af6fce1e3371442eb5d1f9829f https://www.encodeproject.org/files/ENCFF262AAT/@@download/ENCFF262AAT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF680GWJ bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF079UPJ, ENCFF203ABR, ENCFF584VTC 7198586 ENCODE Processing Pipeline 29b4cc2515239f90ec13db9d3c5a935b https://www.encodeproject.org/files/ENCFF680GWJ/@@download/ENCFF680GWJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF564UZL bigBed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF262AAT 12912121 ENCODE Processing Pipeline f86a4c145bc3df0d0378d36a44baa67b https://www.encodeproject.org/files/ENCFF564UZL/@@download/ENCFF564UZL.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378CIR bigBed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF187DLY 13048262 ENCODE Processing Pipeline d7743c3b6217a8a28608f94528d9d87f https://www.encodeproject.org/files/ENCFF378CIR/@@download/ENCFF378CIR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF129AND bigBed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF680GWJ 12928591 ENCODE Processing Pipeline 0cda867cce40fe7e5cdd5d8095e9e75e https://www.encodeproject.org/files/ENCFF129AND/@@download/ENCFF129AND.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF909BJE bigBed narrowPeak optimal idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317TMK 721990 ENCODE Processing Pipeline 08c75c9024e419254a849f5277f60c08 https://www.encodeproject.org/files/ENCFF909BJE/@@download/ENCFF909BJE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF169QNM bed narrowPeak conservative idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF187DLY, ENCFF262AAT, ENCFF680GWJ 311882 ENCODE Processing Pipeline ceccd93c3bf55e14debf98fb2ce661d8 https://www.encodeproject.org/files/ENCFF169QNM/@@download/ENCFF169QNM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF317TMK bed narrowPeak optimal idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF187DLY, ENCFF262AAT, ENCFF680GWJ 347367 ENCODE Processing Pipeline 024952fb5c33f399ff2230f2324b2c26 https://www.encodeproject.org/files/ENCFF317TMK/@@download/ENCFF317TMK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF883NXD bigBed narrowPeak conservative idr thresholded peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF169QNM 667817 ENCODE Processing Pipeline e23a7c20ced6506752355700525b45ab https://www.encodeproject.org/files/ENCFF883NXD/@@download/ENCFF883NXD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF079AGT fastq reads ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2974691562 Richard Myers, HAIB 182ff6310784f27f2f900a54012c3b3f SRA:SRR5339096 https://www.encodeproject.org/files/ENCFF079AGT/@@download/ENCFF079AGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF753ADO fastq reads ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1831918467 Richard Myers, HAIB 75ca786931af2c2aecc9cb733a8372d6 SRA:SRR5339095 https://www.encodeproject.org/files/ENCFF753ADO/@@download/ENCFF753ADO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF374GYZ bam unfiltered alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 76 ENCFF753ADO, ENCFF807MUK 2225443771 ENCODE Processing Pipeline 292846e1417ffad71890b7f84e4e315c https://www.encodeproject.org/files/ENCFF374GYZ/@@download/ENCFF374GYZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF259SVJ bam unfiltered alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079AGT, ENCFF807MUK 3536275768 ENCODE Processing Pipeline cccf1d36b8f35322ec3f5bbcf468f41d https://www.encodeproject.org/files/ENCFF259SVJ/@@download/ENCFF259SVJ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF859RGN bam unfiltered alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079AGT, ENCFF643CGH 3548359882 ENCODE Processing Pipeline 16551e4f53f47fa502498749ae59ddf3 https://www.encodeproject.org/files/ENCFF859RGN/@@download/ENCFF859RGN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF987STE bam unfiltered alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF753ADO 2233002717 ENCODE Processing Pipeline 9d5fc3c0b9eb0a4496b5d0ba7a45aca2 https://www.encodeproject.org/files/ENCFF987STE/@@download/ENCFF987STE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF754VKI bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 76 ENCFF753ADO, ENCFF807MUK 1640726578 ENCODE Processing Pipeline 3a7de9dede9183457b1f76bbaaa15784 https://www.encodeproject.org/files/ENCFF754VKI/@@download/ENCFF754VKI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF372XYO bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF753ADO 1642464166 ENCODE Processing Pipeline 7e23e159a8fd443d6a7f12f97bf24aa0 https://www.encodeproject.org/files/ENCFF372XYO/@@download/ENCFF372XYO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF453XVL bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079AGT, ENCFF643CGH 2717160667 ENCODE Processing Pipeline 9bf815839e7058557d22465cb84d4bde https://www.encodeproject.org/files/ENCFF453XVL/@@download/ENCFF453XVL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970BNS bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079AGT, ENCFF807MUK 2714457672 ENCODE Processing Pipeline d8e3aaa515af2b8a5144e7b2c6d55a00 https://www.encodeproject.org/files/ENCFF970BNS/@@download/ENCFF970BNS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF743QXT bigWig signal p-value ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF372XYO, ENCFF453XVL 639584594 ENCODE Processing Pipeline 570c9ad75b538ebe3731d3ad50e8cebe https://www.encodeproject.org/files/ENCFF743QXT/@@download/ENCFF743QXT.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF864GAC bigWig signal p-value ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF453XVL 669520516 ENCODE Processing Pipeline be56c89516c0777ba37268255eba2b14 https://www.encodeproject.org/files/ENCFF864GAC/@@download/ENCFF864GAC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF625NUH bigWig signal p-value ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF372XYO 666042346 ENCODE Processing Pipeline 0361be0616a26285608084607ea322be https://www.encodeproject.org/files/ENCFF625NUH/@@download/ENCFF625NUH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF897CCJ bigWig fold change over control ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF453XVL 862667721 ENCODE Processing Pipeline da7a2b161ba0636cf1f88958528628d6 https://www.encodeproject.org/files/ENCFF897CCJ/@@download/ENCFF897CCJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF802XFR bigWig fold change over control ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF372XYO, ENCFF453XVL 1175810107 ENCODE Processing Pipeline ea36279ce82a6115341fee5b82bc50cf https://www.encodeproject.org/files/ENCFF802XFR/@@download/ENCFF802XFR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178FID bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF453XVL 5784442 ENCODE Processing Pipeline 899726cf32a073be3256f2a2d62a1c49 https://www.encodeproject.org/files/ENCFF178FID/@@download/ENCFF178FID.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454LGN bigBed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF182XWQ 11236089 ENCODE Processing Pipeline c52daac1f4e66649b6a952fc99f8e33c https://www.encodeproject.org/files/ENCFF454LGN/@@download/ENCFF454LGN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF042QZA bigBed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF521USI 11118655 ENCODE Processing Pipeline bcac23b495daa73f93d2a82319ef09e7 https://www.encodeproject.org/files/ENCFF042QZA/@@download/ENCFF042QZA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF248DOY bigWig fold change over control ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF372XYO 534987060 ENCODE Processing Pipeline a3e4bc9aa78a1e64a60cad1ee9315a14 https://www.encodeproject.org/files/ENCFF248DOY/@@download/ENCFF248DOY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF995ZSA bed narrowPeak optimal idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF178FID, ENCFF182XWQ, ENCFF419RSJ, ENCFF521USI 147515 ENCODE Processing Pipeline 7c2a70920be27fbeeba68c2cb5cd9a4d https://www.encodeproject.org/files/ENCFF995ZSA/@@download/ENCFF995ZSA.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF182XWQ bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF372XYO 5006424 ENCODE Processing Pipeline e7ecccd6eabb45d1b4d34980c206bce7 https://www.encodeproject.org/files/ENCFF182XWQ/@@download/ENCFF182XWQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF948VRJ bed narrowPeak conservative idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF178FID, ENCFF182XWQ, ENCFF419RSJ, ENCFF521USI 110873 ENCODE Processing Pipeline 70fb39dc648d32021c2731c7914e4eb2 https://www.encodeproject.org/files/ENCFF948VRJ/@@download/ENCFF948VRJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521USI bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF372XYO, ENCFF453XVL 6299525 ENCODE Processing Pipeline d9fd8a6c422b10ee88389fbdc2aafbba https://www.encodeproject.org/files/ENCFF521USI/@@download/ENCFF521USI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF419RND bigBed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF178FID 13468711 ENCODE Processing Pipeline 55156341e712680806f439e76e320c38 https://www.encodeproject.org/files/ENCFF419RND/@@download/ENCFF419RND.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362XIC bigBed narrowPeak conservative idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF948VRJ 233466 ENCODE Processing Pipeline ca204970faaf0f036e0d34042e535947 https://www.encodeproject.org/files/ENCFF362XIC/@@download/ENCFF362XIC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF516JMB bigBed narrowPeak optimal idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF995ZSA 281765 ENCODE Processing Pipeline 3fac5ff71a9f5a7506fb790c5ccb25b5 https://www.encodeproject.org/files/ENCFF516JMB/@@download/ENCFF516JMB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF043UOT bigWig signal p-value ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970BNS 1280336918 ENCODE Processing Pipeline 5b848a7b0065ba974f321e12928dcf2f https://www.encodeproject.org/files/ENCFF043UOT/@@download/ENCFF043UOT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF941GVE bigWig signal p-value ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF754VKI 1289861198 ENCODE Processing Pipeline de82d78a734dfbae98cf9d4a47da4842 https://www.encodeproject.org/files/ENCFF941GVE/@@download/ENCFF941GVE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF914XTE bigWig signal p-value ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF754VKI, ENCFF970BNS 1705834355 ENCODE Processing Pipeline d47f923eef3ee7e0777e84318cb0c1b2 https://www.encodeproject.org/files/ENCFF914XTE/@@download/ENCFF914XTE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF337ZHH bigWig fold change over control ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970BNS 1417858799 ENCODE Processing Pipeline 1dfa7d899a468e96455ce63722693ce5 https://www.encodeproject.org/files/ENCFF337ZHH/@@download/ENCFF337ZHH.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF707SKM bigWig fold change over control ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF754VKI 996914848 ENCODE Processing Pipeline 96f76207368d18608ea1b5a0c54c0efe https://www.encodeproject.org/files/ENCFF707SKM/@@download/ENCFF707SKM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF486XEI bigWig fold change over control ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF754VKI, ENCFF970BNS 1840062736 ENCODE Processing Pipeline 776e193a84c090d1110e4350fce3ec70 https://www.encodeproject.org/files/ENCFF486XEI/@@download/ENCFF486XEI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF982JLX bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970BNS 6582722 ENCODE Processing Pipeline dda7cf3d1254906d95592536b1dd4c76 https://www.encodeproject.org/files/ENCFF982JLX/@@download/ENCFF982JLX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF959BSS bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF754VKI 5959172 ENCODE Processing Pipeline 5130dd852416e154d8619cc2e9ee3f9e https://www.encodeproject.org/files/ENCFF959BSS/@@download/ENCFF959BSS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF932MXK bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF754VKI, ENCFF970BNS 6959929 ENCODE Processing Pipeline e44d24a0f6189d1029ed414ed411a35a https://www.encodeproject.org/files/ENCFF932MXK/@@download/ENCFF932MXK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399IFW bigBed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF982JLX 13612093 ENCODE Processing Pipeline 914aa069d7688e6b734273e08c9efd2d https://www.encodeproject.org/files/ENCFF399IFW/@@download/ENCFF399IFW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124YPR bigBed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF959BSS 11344414 ENCODE Processing Pipeline baa273d432364f1ba4fe5d1b0df6ed40 https://www.encodeproject.org/files/ENCFF124YPR/@@download/ENCFF124YPR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF606MDN bed narrowPeak conservative idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF932MXK, ENCFF959BSS, ENCFF982JLX 111724 ENCODE Processing Pipeline 9829b11aaed649d507c61ccd7a689c45 https://www.encodeproject.org/files/ENCFF606MDN/@@download/ENCFF606MDN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF492BFD bigBed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF932MXK 11416123 ENCODE Processing Pipeline 5dc0b3be4218c500a64d6f0cb2779285 https://www.encodeproject.org/files/ENCFF492BFD/@@download/ENCFF492BFD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF496SOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF172WZC 277820 ENCODE Processing Pipeline 8b227ba6d8cdd6c525d6cc8e1996ee4a https://www.encodeproject.org/files/ENCFF496SOQ/@@download/ENCFF496SOQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF353DOD bigBed narrowPeak conservative idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF606MDN 240466 ENCODE Processing Pipeline 4a1f535b7bb8a06a0dbcb89921ed1626 https://www.encodeproject.org/files/ENCFF353DOD/@@download/ENCFF353DOD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF172WZC bed narrowPeak optimal idr thresholded peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF932MXK, ENCFF959BSS, ENCFF982JLX 139478 ENCODE Processing Pipeline 1cfd9eb23e90a2cc62c49a6d12fb602c https://www.encodeproject.org/files/ENCFF172WZC/@@download/ENCFF172WZC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF398DGY bam unfiltered alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 50 ENCFF215QBP, ENCFF807MUK 1077376643 ENCODE Processing Pipeline ee13406c5ce9b544f80f07bd0338061b https://www.encodeproject.org/files/ENCFF398DGY/@@download/ENCFF398DGY.bam hg19 released low read depth, missing genetic modification characterization ENCFF714TQJ bam unfiltered alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 50 ENCFF426DFS, ENCFF807MUK 1039915912 ENCODE Processing Pipeline addafaca92d0e727d3f38ec4ee5b37d0 https://www.encodeproject.org/files/ENCFF714TQJ/@@download/ENCFF714TQJ.bam hg19 released low read depth, missing genetic modification characterization ENCFF426DFS fastq reads ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 956201588 Kevin White, UChicago c6a9e3a4951d3c24a8ed393b30fe17f8 SRA:SRR6213986 https://www.encodeproject.org/files/ENCFF426DFS/@@download/ENCFF426DFS.fastq.gz Illumina HiSeq 2000 /files/ENCFF044EPS/ released low read depth, missing genetic modification characterization ENCFF215QBP fastq reads ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1000451826 Kevin White, UChicago be8698180095a77f5d64937813609ce3 SRA:SRR6213985 https://www.encodeproject.org/files/ENCFF215QBP/@@download/ENCFF215QBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF044EPS/ released low read depth, missing genetic modification characterization ENCFF500GNW bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 50 ENCFF426DFS, ENCFF807MUK 811862923 ENCODE Processing Pipeline 751976903f70f3ec33e30d1314028bc4 https://www.encodeproject.org/files/ENCFF500GNW/@@download/ENCFF500GNW.bam hg19 released low read depth, missing genetic modification characterization ENCFF804GZU bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 50 ENCFF215QBP, ENCFF807MUK 841766508 ENCODE Processing Pipeline c8b0e5f0b3de657348a08c08a5bcf35a https://www.encodeproject.org/files/ENCFF804GZU/@@download/ENCFF804GZU.bam hg19 released low read depth, missing genetic modification characterization ENCFF917MWY bigWig fold change over control ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF053ULL, ENCFF804GZU 474991837 ENCODE Processing Pipeline 1e22cc40726eb963fa76dbf79d180272 https://www.encodeproject.org/files/ENCFF917MWY/@@download/ENCFF917MWY.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF487JYD bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF053ULL, ENCFF804GZU 6198220 ENCODE Processing Pipeline 149c202090cd8c1452ad189901f54d15 https://www.encodeproject.org/files/ENCFF487JYD/@@download/ENCFF487JYD.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF583QEJ bigWig signal p-value ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF053ULL, ENCFF804GZU 552528857 ENCODE Processing Pipeline fb3d44d4728a1bf8f0a74bfa7c705646 https://www.encodeproject.org/files/ENCFF583QEJ/@@download/ENCFF583QEJ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF002QEB bigWig signal p-value ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF053ULL, ENCFF500GNW, ENCFF804GZU 692921792 ENCODE Processing Pipeline 570a011c0ac7c7011f17cf6f2aca0e70 https://www.encodeproject.org/files/ENCFF002QEB/@@download/ENCFF002QEB.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF423GZH bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF053ULL, ENCFF500GNW 6055436 ENCODE Processing Pipeline 6b81da2f832fd3de56ca5db061472997 https://www.encodeproject.org/files/ENCFF423GZH/@@download/ENCFF423GZH.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF823IBN bigBed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF423GZH 13102410 ENCODE Processing Pipeline 80bbbd0a42f7ffb48563094e6ce72c13 https://www.encodeproject.org/files/ENCFF823IBN/@@download/ENCFF823IBN.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF104RJR bigBed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF590NAP 13167345 ENCODE Processing Pipeline eaf33e2aacacac41d0f563de14f04110 https://www.encodeproject.org/files/ENCFF104RJR/@@download/ENCFF104RJR.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF117IQQ bigWig signal p-value ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF053ULL, ENCFF500GNW 514803191 ENCODE Processing Pipeline bd7f025a433de976cb79e6b1d2b18572 https://www.encodeproject.org/files/ENCFF117IQQ/@@download/ENCFF117IQQ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF236GVP bigWig fold change over control ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF053ULL, ENCFF500GNW 458132775 ENCODE Processing Pipeline 40265e02cc1877fe29832e02231d2905 https://www.encodeproject.org/files/ENCFF236GVP/@@download/ENCFF236GVP.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF962YAA bigWig fold change over control ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF053ULL, ENCFF500GNW, ENCFF804GZU 731194457 ENCODE Processing Pipeline adee7e7c59d45ba22e1a4fffcc6ccce4 https://www.encodeproject.org/files/ENCFF962YAA/@@download/ENCFF962YAA.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF590NAP bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF053ULL, ENCFF500GNW, ENCFF804GZU 6747513 ENCODE Processing Pipeline 5f5dfbcf75ed5937e8532fe3b8b44953 https://www.encodeproject.org/files/ENCFF590NAP/@@download/ENCFF590NAP.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF127JDK bigBed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF487JYD 13097092 ENCODE Processing Pipeline 26795abae8a1e1bde04d6c44dfe56413 https://www.encodeproject.org/files/ENCFF127JDK/@@download/ENCFF127JDK.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF338NPG bam unfiltered alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 50 ENCFF426DFS, ENCFF643CGH 1044721119 ENCODE Processing Pipeline d267b3c8188abd313d4e0d22f988989e https://www.encodeproject.org/files/ENCFF338NPG/@@download/ENCFF338NPG.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF172GCN bam unfiltered alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 50 ENCFF215QBP, ENCFF643CGH 1082045820 ENCODE Processing Pipeline 6910c4bca8ffe77387ee7b52f2ef8041 https://www.encodeproject.org/files/ENCFF172GCN/@@download/ENCFF172GCN.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF680KUB bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 50 ENCFF215QBP, ENCFF643CGH 841330804 ENCODE Processing Pipeline e274afe97bacb1f00d005d4247697cb0 https://www.encodeproject.org/files/ENCFF680KUB/@@download/ENCFF680KUB.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF757TIT bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 50 ENCFF426DFS, ENCFF643CGH 811445298 ENCODE Processing Pipeline c6d9725640693da9c93fdcc0c18ac1a0 https://www.encodeproject.org/files/ENCFF757TIT/@@download/ENCFF757TIT.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF214SAR bigWig signal p-value ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF756KAA, ENCFF757TIT 590849558 ENCODE Processing Pipeline 70dd8e762c307fba73aea5d1e327a428 https://www.encodeproject.org/files/ENCFF214SAR/@@download/ENCFF214SAR.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF313LSS bigWig signal p-value ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF680KUB, ENCFF756KAA 461995395 ENCODE Processing Pipeline 2fde67a49ce1968f98fc8489378c2f89 https://www.encodeproject.org/files/ENCFF313LSS/@@download/ENCFF313LSS.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF727NQN bigWig signal p-value ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF680KUB, ENCFF756KAA, ENCFF757TIT 686665841 ENCODE Processing Pipeline 5590536cffdc51006d77d59b9bc3390d https://www.encodeproject.org/files/ENCFF727NQN/@@download/ENCFF727NQN.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF479LED bigWig fold change over control ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF680KUB, ENCFF756KAA 476092158 ENCODE Processing Pipeline 96e4ad24517c042a8861da651566f007 https://www.encodeproject.org/files/ENCFF479LED/@@download/ENCFF479LED.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF904NRE bigWig fold change over control ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF756KAA, ENCFF757TIT 461307671 ENCODE Processing Pipeline 1591ae61695e490b8d429a5b8d94aafb https://www.encodeproject.org/files/ENCFF904NRE/@@download/ENCFF904NRE.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF201REJ bigWig fold change over control ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF680KUB, ENCFF756KAA, ENCFF757TIT 737447969 ENCODE Processing Pipeline 680b9fe45e2f028dff3e1c411c5aaa39 https://www.encodeproject.org/files/ENCFF201REJ/@@download/ENCFF201REJ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF867DSB bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF680KUB, ENCFF756KAA, ENCFF757TIT 6565491 ENCODE Processing Pipeline e6bbcd9c0153dcdd1046f08a4f1d64bd https://www.encodeproject.org/files/ENCFF867DSB/@@download/ENCFF867DSB.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF022NSD bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF756KAA, ENCFF757TIT 5860452 ENCODE Processing Pipeline f1164658831219149c3f9f05cd436562 https://www.encodeproject.org/files/ENCFF022NSD/@@download/ENCFF022NSD.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF799ZUU bigBed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF022NSD 13076980 ENCODE Processing Pipeline 4e79abfb16b7366940bd9b322eb3b8d4 https://www.encodeproject.org/files/ENCFF799ZUU/@@download/ENCFF799ZUU.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF901HEW bigBed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF867DSB 13167224 ENCODE Processing Pipeline a0cf19071b543058ebc579d9be6c49db https://www.encodeproject.org/files/ENCFF901HEW/@@download/ENCFF901HEW.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF907LHK bigBed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF593LGK 13039502 ENCODE Processing Pipeline 3cb03a5e01b8caa4fb41364bb12321a0 https://www.encodeproject.org/files/ENCFF907LHK/@@download/ENCFF907LHK.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF572OWY bed narrowPeak optimal idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF022NSD, ENCFF419RSJ, ENCFF593LGK, ENCFF867DSB 473778 ENCODE Processing Pipeline 80a1eb3e913e8186076f68b3dc53905b https://www.encodeproject.org/files/ENCFF572OWY/@@download/ENCFF572OWY.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF340KMA bigBed narrowPeak optimal idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF572OWY 1093024 ENCODE Processing Pipeline 091ba0ce5fd2b94eef532c92ced12ee2 https://www.encodeproject.org/files/ENCFF340KMA/@@download/ENCFF340KMA.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF593LGK bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF680KUB, ENCFF756KAA 5945742 ENCODE Processing Pipeline 555b9912348b75042f6fc92936e5f796 https://www.encodeproject.org/files/ENCFF593LGK/@@download/ENCFF593LGK.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF709IUJ bed narrowPeak conservative idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF022NSD, ENCFF419RSJ, ENCFF593LGK, ENCFF867DSB 470038 ENCODE Processing Pipeline 5dcd831928ffef01b05fbd2b54e2d844 https://www.encodeproject.org/files/ENCFF709IUJ/@@download/ENCFF709IUJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF782LGJ bigBed narrowPeak conservative idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF709IUJ 1086084 ENCODE Processing Pipeline 1bac79ec90b7dc550ed084f97fbcce08 https://www.encodeproject.org/files/ENCFF782LGJ/@@download/ENCFF782LGJ.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF244YEY bigBed narrowPeak conservative idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF575JXW 808223 ENCODE Processing Pipeline 9d9e2d7d929d82788bfda3d2ea3e7fcf https://www.encodeproject.org/files/ENCFF244YEY/@@download/ENCFF244YEY.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF575JXW bed narrowPeak conservative idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF423GZH, ENCFF487JYD, ENCFF590NAP 414991 ENCODE Processing Pipeline 2e9780b666c281818fe50560613fe84b https://www.encodeproject.org/files/ENCFF575JXW/@@download/ENCFF575JXW.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF433RKB bed narrowPeak optimal idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF423GZH, ENCFF487JYD, ENCFF590NAP 422337 ENCODE Processing Pipeline f5ce515799a684a69f3d908d6f5358e2 https://www.encodeproject.org/files/ENCFF433RKB/@@download/ENCFF433RKB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF926KSY bigBed narrowPeak optimal idr thresholded peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF433RKB 817532 ENCODE Processing Pipeline fe197c0204c00e99f7da9fd48af57c0c https://www.encodeproject.org/files/ENCFF926KSY/@@download/ENCFF926KSY.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF068PBQ fastq reads ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2232661054 Richard Myers, HAIB 9de6e9c3300e9d415145a734d4b82f9b SRA:SRR5339144 https://www.encodeproject.org/files/ENCFF068PBQ/@@download/ENCFF068PBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF383FTW fastq reads ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2012531426 Richard Myers, HAIB b7a4244f6b1c3b1fe2cd149447b68c46 SRA:SRR5339145 https://www.encodeproject.org/files/ENCFF383FTW/@@download/ENCFF383FTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF101BQK bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF068PBQ, ENCFF807MUK 2047542572 ENCODE Processing Pipeline da665246ad8c38a316687138098d094e https://www.encodeproject.org/files/ENCFF101BQK/@@download/ENCFF101BQK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970YTR bam unfiltered alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF068PBQ, ENCFF807MUK 2695310863 ENCODE Processing Pipeline 9a104e243e09add6d92a27511494151e https://www.encodeproject.org/files/ENCFF970YTR/@@download/ENCFF970YTR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124TLC bam unfiltered alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF383FTW, ENCFF807MUK 2451681319 ENCODE Processing Pipeline cc6c41ab717a57368b41f5f9a401e853 https://www.encodeproject.org/files/ENCFF124TLC/@@download/ENCFF124TLC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378PCU bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF383FTW, ENCFF807MUK 1926843228 ENCODE Processing Pipeline 39ede5d027fa29e0eb2f028516c54190 https://www.encodeproject.org/files/ENCFF378PCU/@@download/ENCFF378PCU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF437BCQ bam unfiltered alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF068PBQ, ENCFF643CGH 2703401260 ENCODE Processing Pipeline 92ff220af7d4c9a44601295a70e20001 https://www.encodeproject.org/files/ENCFF437BCQ/@@download/ENCFF437BCQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF553QXD bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF068PBQ, ENCFF643CGH 2049119246 ENCODE Processing Pipeline b2c4e4b96d2a406d2727378dab18203b https://www.encodeproject.org/files/ENCFF553QXD/@@download/ENCFF553QXD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681PWS bam unfiltered alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF383FTW, ENCFF643CGH 2459876405 ENCODE Processing Pipeline d00bb654dbd463139f6ada509c16238c https://www.encodeproject.org/files/ENCFF681PWS/@@download/ENCFF681PWS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685WAA bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF383FTW, ENCFF643CGH 1928675958 ENCODE Processing Pipeline a6b18b2a64a7a2d86736475b1f301c4b https://www.encodeproject.org/files/ENCFF685WAA/@@download/ENCFF685WAA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402YSA bigWig signal p-value ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF685WAA 642798189 ENCODE Processing Pipeline 67e9d01b926c23f612d8524ae0da2319 https://www.encodeproject.org/files/ENCFF402YSA/@@download/ENCFF402YSA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF765EEI bigWig signal p-value ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF553QXD 671494538 ENCODE Processing Pipeline 647fa45649bc2721486bd27873946874 https://www.encodeproject.org/files/ENCFF765EEI/@@download/ENCFF765EEI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF513PCS bigWig signal p-value ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF553QXD, ENCFF685WAA 662436061 ENCODE Processing Pipeline b91a5c39c3e67b56b9839cc7339f2901 https://www.encodeproject.org/files/ENCFF513PCS/@@download/ENCFF513PCS.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF140ZHW bigWig fold change over control ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF553QXD 696293320 ENCODE Processing Pipeline c63dad7678d4e71ad0298d5f28037d4f https://www.encodeproject.org/files/ENCFF140ZHW/@@download/ENCFF140ZHW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851YMO bigWig fold change over control ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF553QXD, ENCFF685WAA 1097024492 ENCODE Processing Pipeline cb75483d58a0e260a347b2a038a212c8 https://www.encodeproject.org/files/ENCFF851YMO/@@download/ENCFF851YMO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF024CVJ bigWig fold change over control ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF685WAA 644552954 ENCODE Processing Pipeline 3dc0ba314f4c1c9f137829b7656b69a1 https://www.encodeproject.org/files/ENCFF024CVJ/@@download/ENCFF024CVJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF490TVK bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF553QXD 5737264 ENCODE Processing Pipeline d0c8c0b6bbd2137e7d16e93d1b291e18 https://www.encodeproject.org/files/ENCFF490TVK/@@download/ENCFF490TVK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF225AMW bigBed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF514DMF 11221270 ENCODE Processing Pipeline 8825ded51e917e5afa93f3ced402e5c0 https://www.encodeproject.org/files/ENCFF225AMW/@@download/ENCFF225AMW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF895WKC bigBed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF490TVK 13360207 ENCODE Processing Pipeline f2a0abaf42bf0310d4de4c8138d11d1a https://www.encodeproject.org/files/ENCFF895WKC/@@download/ENCFF895WKC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF514DMF bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF685WAA 5263326 ENCODE Processing Pipeline 61d52cacb379a100474432f3f98ab45e https://www.encodeproject.org/files/ENCFF514DMF/@@download/ENCFF514DMF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF790LLT bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF553QXD, ENCFF685WAA 6394382 ENCODE Processing Pipeline 090ec064a8a8042492a870647e9e4997 https://www.encodeproject.org/files/ENCFF790LLT/@@download/ENCFF790LLT.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF264GLW bigBed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF790LLT 13191924 ENCODE Processing Pipeline ddcbcac0e3f7d622b018456c97fae2be https://www.encodeproject.org/files/ENCFF264GLW/@@download/ENCFF264GLW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF759QNJ bigBed narrowPeak conservative idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF016NUM 283234 ENCODE Processing Pipeline 3bdef12459b6144930fd059a5d798217 https://www.encodeproject.org/files/ENCFF759QNJ/@@download/ENCFF759QNJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF623GQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF431YWW 294772 ENCODE Processing Pipeline 95d65da58ffb9942868270b2aa9aec26 https://www.encodeproject.org/files/ENCFF623GQJ/@@download/ENCFF623GQJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF016NUM bed narrowPeak conservative idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF490TVK, ENCFF514DMF, ENCFF790LLT 112426 ENCODE Processing Pipeline e264de3145cfcb772a3398cdb9c1beda https://www.encodeproject.org/files/ENCFF016NUM/@@download/ENCFF016NUM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF431YWW bed narrowPeak optimal idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF490TVK, ENCFF514DMF, ENCFF790LLT 120317 ENCODE Processing Pipeline 0d67a99dd848859ae16bfd593725d313 https://www.encodeproject.org/files/ENCFF431YWW/@@download/ENCFF431YWW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF137IUV bigWig signal p-value ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378PCU 1445189677 ENCODE Processing Pipeline 92eeda251e501eef37366d22fe5c6f51 https://www.encodeproject.org/files/ENCFF137IUV/@@download/ENCFF137IUV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF675MYN bigWig signal p-value ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF101BQK, ENCFF203ABR 1292537619 ENCODE Processing Pipeline ea947d9bf2d9d6e50270f3c9bb855bf7 https://www.encodeproject.org/files/ENCFF675MYN/@@download/ENCFF675MYN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF442OPZ bigWig signal p-value ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF101BQK, ENCFF203ABR, ENCFF378PCU 1740823279 ENCODE Processing Pipeline 2633a6377e0d64d684d4127e25e20fa5 https://www.encodeproject.org/files/ENCFF442OPZ/@@download/ENCFF442OPZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF411ZNU bigWig fold change over control ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378PCU 1176941406 ENCODE Processing Pipeline 3b8ab202c3153c02cf92cb5af6a8f2d8 https://www.encodeproject.org/files/ENCFF411ZNU/@@download/ENCFF411ZNU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF311NJO bigWig fold change over control ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF101BQK, ENCFF203ABR 1262145551 ENCODE Processing Pipeline 6de01b5c7bba5729245e1ae96751e044 https://www.encodeproject.org/files/ENCFF311NJO/@@download/ENCFF311NJO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF227UAR bigWig fold change over control ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF101BQK, ENCFF203ABR, ENCFF378PCU 1777745724 ENCODE Processing Pipeline dd1e40e78ae5ca3a8103ae240feeb007 https://www.encodeproject.org/files/ENCFF227UAR/@@download/ENCFF227UAR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF840FIK bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF101BQK, ENCFF203ABR, ENCFF378PCU 7032828 ENCODE Processing Pipeline f627938b3727468ece59cfc982900b3b https://www.encodeproject.org/files/ENCFF840FIK/@@download/ENCFF840FIK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF074TSF bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378PCU 6260345 ENCODE Processing Pipeline ebf98b58bf9f340b1d5ef057e7c8ca89 https://www.encodeproject.org/files/ENCFF074TSF/@@download/ENCFF074TSF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF820QNK bigBed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF074TSF 13609948 ENCODE Processing Pipeline fd9d0dfa23a9f8d483c06c3f4b2f09ae https://www.encodeproject.org/files/ENCFF820QNK/@@download/ENCFF820QNK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF819ZLV bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF101BQK, ENCFF203ABR 6629888 ENCODE Processing Pipeline 538671cf8156e5669b7aa516f487832b https://www.encodeproject.org/files/ENCFF819ZLV/@@download/ENCFF819ZLV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF758MOB bigBed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF819ZLV 13483124 ENCODE Processing Pipeline fb143e9ab7be03ac708233da1d55a41a https://www.encodeproject.org/files/ENCFF758MOB/@@download/ENCFF758MOB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF159BPQ bigBed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF840FIK 13449951 ENCODE Processing Pipeline 88925427ba6cff4bfeaae91912c6d912 https://www.encodeproject.org/files/ENCFF159BPQ/@@download/ENCFF159BPQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF679SPF bed narrowPeak optimal idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF074TSF, ENCFF819ZLV, ENCFF840FIK 105934 ENCODE Processing Pipeline 58f3f1a2b5f9adedbf6f1aee3925c96b https://www.encodeproject.org/files/ENCFF679SPF/@@download/ENCFF679SPF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF071VWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF249IBI 218676 ENCODE Processing Pipeline d15235f41a22aa39bddd494202bde0b2 https://www.encodeproject.org/files/ENCFF071VWQ/@@download/ENCFF071VWQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF394UIG bigBed narrowPeak optimal idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF679SPF 227331 ENCODE Processing Pipeline ae6c816d7805de0a5f60d8b91be5855c https://www.encodeproject.org/files/ENCFF394UIG/@@download/ENCFF394UIG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249IBI bed narrowPeak conservative idr thresholded peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF074TSF, ENCFF819ZLV, ENCFF840FIK 99167 ENCODE Processing Pipeline bad9a2f42933be05eea845ec73c6309d https://www.encodeproject.org/files/ENCFF249IBI/@@download/ENCFF249IBI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF247HTV fastq reads ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1983536862 Richard Myers, HAIB 4e0a33097f77ce3fbd0612c8cd7c1404 SRA:SRR5331198 https://www.encodeproject.org/files/ENCFF247HTV/@@download/ENCFF247HTV.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF714SGI fastq reads ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1978680822 Richard Myers, HAIB 87d194f1a4b83cc4c84edf54e42148ab SRA:SRR5331197 https://www.encodeproject.org/files/ENCFF714SGI/@@download/ENCFF714SGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF573YRY bam unfiltered alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF714SGI 2182199866 ENCODE Processing Pipeline 94ef84cec3b6d797907890a69e1ec19e https://www.encodeproject.org/files/ENCFF573YRY/@@download/ENCFF573YRY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF411DVO bam unfiltered alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF247HTV, ENCFF643CGH 2199922288 ENCODE Processing Pipeline ea8756be5dae1b77f2348d1a7c0da258 https://www.encodeproject.org/files/ENCFF411DVO/@@download/ENCFF411DVO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF897UYW bam unfiltered alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF247HTV, ENCFF807MUK 2195659086 ENCODE Processing Pipeline bfaa79e7798c2d1df06b4b898b2c32c6 https://www.encodeproject.org/files/ENCFF897UYW/@@download/ENCFF897UYW.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF031TCU bam unfiltered alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF714SGI, ENCFF807MUK 2177414725 ENCODE Processing Pipeline bf646e05d84e7bb51c92c655785b9b32 https://www.encodeproject.org/files/ENCFF031TCU/@@download/ENCFF031TCU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF436OMA bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF247HTV, ENCFF643CGH 1684344808 ENCODE Processing Pipeline ca9e29e564fc5bffbbe355fc1bc08f8a https://www.encodeproject.org/files/ENCFF436OMA/@@download/ENCFF436OMA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF921NVQ bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF714SGI, ENCFF807MUK 1651157280 ENCODE Processing Pipeline 75c8aa077b0a0482a9b2b0846c3dca5a https://www.encodeproject.org/files/ENCFF921NVQ/@@download/ENCFF921NVQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887RJC bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF247HTV, ENCFF807MUK 1683641791 ENCODE Processing Pipeline 64efb6079c9f14372ba6c4aa9221dfa8 https://www.encodeproject.org/files/ENCFF887RJC/@@download/ENCFF887RJC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF123DYP bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF714SGI 1652015010 ENCODE Processing Pipeline c46c03a40ce71142800814c2b861b8c9 https://www.encodeproject.org/files/ENCFF123DYP/@@download/ENCFF123DYP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF687STK bigWig signal p-value ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF123DYP 612036904 ENCODE Processing Pipeline cafc478784146cb2ca491dba77deed0b https://www.encodeproject.org/files/ENCFF687STK/@@download/ENCFF687STK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF711RUF bigWig signal p-value ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF123DYP, ENCFF436OMA 616992193 ENCODE Processing Pipeline a45bfcf885219b4fe8db24582d969ed6 https://www.encodeproject.org/files/ENCFF711RUF/@@download/ENCFF711RUF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF048RFA bigWig signal p-value ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF436OMA 618108329 ENCODE Processing Pipeline f074455e76b4ab8a6fc26356cc8c00bd https://www.encodeproject.org/files/ENCFF048RFA/@@download/ENCFF048RFA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF194KOM bigWig fold change over control ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF123DYP 596374093 ENCODE Processing Pipeline ccd7e875ab6218f8a67b1b0741064ee4 https://www.encodeproject.org/files/ENCFF194KOM/@@download/ENCFF194KOM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF068JNP bigWig fold change over control ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF436OMA 603583662 ENCODE Processing Pipeline 25643da636a99c2a64708333dcb65c17 https://www.encodeproject.org/files/ENCFF068JNP/@@download/ENCFF068JNP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF583TMU bigWig fold change over control ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF123DYP, ENCFF436OMA 1001912021 ENCODE Processing Pipeline 1f62940d8de2aa32ab1f21ff43ea6db6 https://www.encodeproject.org/files/ENCFF583TMU/@@download/ENCFF583TMU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF153DTK bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF436OMA 6803705 ENCODE Processing Pipeline 5fa08b0a3956ff9fc9c5f9dcb0e79831 https://www.encodeproject.org/files/ENCFF153DTK/@@download/ENCFF153DTK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF473XPU bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF123DYP, ENCFF436OMA 7130793 ENCODE Processing Pipeline 1cb7304ee7521f6d7a0748329f39c42f https://www.encodeproject.org/files/ENCFF473XPU/@@download/ENCFF473XPU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF828CEN bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF123DYP 6670595 ENCODE Processing Pipeline 704595581b919bcd9b16f3733c0192a5 https://www.encodeproject.org/files/ENCFF828CEN/@@download/ENCFF828CEN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF301NSH bigBed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF828CEN 12885683 ENCODE Processing Pipeline edca4715682c9a208ca1b72e13df4735 https://www.encodeproject.org/files/ENCFF301NSH/@@download/ENCFF301NSH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF155QEZ bigBed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF153DTK 12894736 ENCODE Processing Pipeline 20b4318bc0445036304ac252cc70e697 https://www.encodeproject.org/files/ENCFF155QEZ/@@download/ENCFF155QEZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF048GOO bigBed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF473XPU 12815324 ENCODE Processing Pipeline cba6b2809d05cbc6feb275f5f1c2418e https://www.encodeproject.org/files/ENCFF048GOO/@@download/ENCFF048GOO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935AGY bed narrowPeak conservative idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF153DTK, ENCFF419RSJ, ENCFF473XPU, ENCFF828CEN 387814 ENCODE Processing Pipeline 758055fe9b608d7bcd83bebbb6c45c05 https://www.encodeproject.org/files/ENCFF935AGY/@@download/ENCFF935AGY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262LJF bigBed narrowPeak conservative idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF935AGY 943014 ENCODE Processing Pipeline b7fcf4ba8f37c97c47de7558136e480b https://www.encodeproject.org/files/ENCFF262LJF/@@download/ENCFF262LJF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF253EID bed narrowPeak optimal idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF153DTK, ENCFF419RSJ, ENCFF473XPU, ENCFF828CEN 396719 ENCODE Processing Pipeline 87c87b5606d428ac90fb8bc857ea095d https://www.encodeproject.org/files/ENCFF253EID/@@download/ENCFF253EID.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF047QYI bigBed narrowPeak optimal idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF253EID 959957 ENCODE Processing Pipeline 79608e2628acaa8f14f563a00ef5ccec https://www.encodeproject.org/files/ENCFF047QYI/@@download/ENCFF047QYI.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF098ESM bigWig signal p-value ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF887RJC 1282001245 ENCODE Processing Pipeline 843ebeb3f14995854dcd45022ee90237 https://www.encodeproject.org/files/ENCFF098ESM/@@download/ENCFF098ESM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF664DJS bigWig signal p-value ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF921NVQ 1285251304 ENCODE Processing Pipeline 41216ff784d3fdfa3e7e5668d9e9a1df https://www.encodeproject.org/files/ENCFF664DJS/@@download/ENCFF664DJS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF627WQV bigWig signal p-value ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF887RJC, ENCFF921NVQ 1352685296 ENCODE Processing Pipeline ac81df9eb442f3c2816fa4d55ceba14f https://www.encodeproject.org/files/ENCFF627WQV/@@download/ENCFF627WQV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF264LBZ bigWig fold change over control ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF887RJC 1122965920 ENCODE Processing Pipeline 2c09b3a644d141fe4695183a4c48a8db https://www.encodeproject.org/files/ENCFF264LBZ/@@download/ENCFF264LBZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF945FFH bigWig fold change over control ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF921NVQ 1049737171 ENCODE Processing Pipeline 0a5a52568f221a89213a52363b83bcb2 https://www.encodeproject.org/files/ENCFF945FFH/@@download/ENCFF945FFH.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF230IJN bigWig fold change over control ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF887RJC, ENCFF921NVQ 1604326042 ENCODE Processing Pipeline f04e927bd1ebe669937446b5b5b87e16 https://www.encodeproject.org/files/ENCFF230IJN/@@download/ENCFF230IJN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308KAE bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF887RJC 7037785 ENCODE Processing Pipeline 1391340be3595584a1cc0a711cc1de92 https://www.encodeproject.org/files/ENCFF308KAE/@@download/ENCFF308KAE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF317CAE bigBed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF308KAE 12824903 ENCODE Processing Pipeline 4a5af85d7588e5c7df77d67aa9f25550 https://www.encodeproject.org/files/ENCFF317CAE/@@download/ENCFF317CAE.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF199FRO bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF921NVQ 7002376 ENCODE Processing Pipeline c421f1d8f4006fbfe7882fc68e83cda1 https://www.encodeproject.org/files/ENCFF199FRO/@@download/ENCFF199FRO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425QMN bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF887RJC, ENCFF921NVQ 7225767 ENCODE Processing Pipeline 6161dc6dc75c5c9d3542e29415cf30b1 https://www.encodeproject.org/files/ENCFF425QMN/@@download/ENCFF425QMN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF147QXH bigBed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF199FRO 12868835 ENCODE Processing Pipeline 38c9e09dbe1237e4b4216424949a42e3 https://www.encodeproject.org/files/ENCFF147QXH/@@download/ENCFF147QXH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF912EJX bigBed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF425QMN 12774391 ENCODE Processing Pipeline 6ce6f14b8867a189087c2a8178c876bf https://www.encodeproject.org/files/ENCFF912EJX/@@download/ENCFF912EJX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF724AFB bed narrowPeak conservative idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF199FRO, ENCFF308KAE, ENCFF425QMN 380476 ENCODE Processing Pipeline b50d790f0fbe25837fe9720e766a8481 https://www.encodeproject.org/files/ENCFF724AFB/@@download/ENCFF724AFB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF611SBI bigBed narrowPeak conservative idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF724AFB 790135 ENCODE Processing Pipeline 0a983a0550c88a1cb031c084d20cd170 https://www.encodeproject.org/files/ENCFF611SBI/@@download/ENCFF611SBI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF969GKJ bed narrowPeak optimal idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF199FRO, ENCFF308KAE, ENCFF425QMN 393609 ENCODE Processing Pipeline 07957e2fa3917e92ccaff4d4305055f4 https://www.encodeproject.org/files/ENCFF969GKJ/@@download/ENCFF969GKJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF572XNT bigBed narrowPeak optimal idr thresholded peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF969GKJ 810962 ENCODE Processing Pipeline b3f36d00b048675b8f93409e2ca7abee https://www.encodeproject.org/files/ENCFF572XNT/@@download/ENCFF572XNT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF592DVR fastq reads ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF151IHT 3338439822 Michael Snyder, Stanford e2a3a0b3747296475a379e88ee9bb759 SRA:SRR6214020 https://www.encodeproject.org/files/ENCFF592DVR/@@download/ENCFF592DVR.fastq.gz Illumina HiSeq 4000 /files/ENCFF736ADI/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF151IHT fastq reads ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF592DVR 2912673100 Michael Snyder, Stanford 597790b05231ac5c63d25b4bc22ce565 SRA:SRR6214020 https://www.encodeproject.org/files/ENCFF151IHT/@@download/ENCFF151IHT.fastq.gz Illumina HiSeq 4000 /files/ENCFF060AIJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF120ASG bam unfiltered alignments ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF151IHT, ENCFF592DVR, ENCFF807MUK 5504550174 ENCODE Processing Pipeline 779d2436854fbb4d94068056ee1a3c9e https://www.encodeproject.org/files/ENCFF120ASG/@@download/ENCFF120ASG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF699AKH bam unfiltered alignments ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF151IHT, ENCFF592DVR, ENCFF643CGH 5501837770 ENCODE Processing Pipeline e4d133073c6ee3414f864143b752af47 https://www.encodeproject.org/files/ENCFF699AKH/@@download/ENCFF699AKH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF309III bam alignments ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF151IHT, ENCFF592DVR, ENCFF807MUK 2982663962 ENCODE Processing Pipeline bef0ad82009fe6adba872151545ae44e https://www.encodeproject.org/files/ENCFF309III/@@download/ENCFF309III.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF809BGD bam alignments ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF151IHT, ENCFF592DVR, ENCFF643CGH 2983924444 ENCODE Processing Pipeline f2711fa86aa72f4cd9c3d2e7d6fad5b0 https://www.encodeproject.org/files/ENCFF809BGD/@@download/ENCFF809BGD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF639CAG bigWig signal p-value ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF309III, ENCFF735LIV 1148848311 ENCODE Processing Pipeline 42fc0f660cf6ee82b17ef1c93156a168 https://www.encodeproject.org/files/ENCFF639CAG/@@download/ENCFF639CAG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF692BII bigWig fold change over control ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF309III, ENCFF735LIV 1035021100 ENCODE Processing Pipeline e2ef65ad6fc9b31d22f9b759e290bc69 https://www.encodeproject.org/files/ENCFF692BII/@@download/ENCFF692BII.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF541GTF bed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF309III, ENCFF735LIV 6736752 ENCODE Processing Pipeline 9a5076239e164774b5cc1f186250afab https://www.encodeproject.org/files/ENCFF541GTF/@@download/ENCFF541GTF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF021ZSL bigBed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF541GTF 13506472 ENCODE Processing Pipeline 568136ae9794bec166f8f683e1e22025 https://www.encodeproject.org/files/ENCFF021ZSL/@@download/ENCFF021ZSL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF646ODW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF541GTF 738625 ENCODE Processing Pipeline eaede68764398ab30bd3ee58592c9fc1 https://www.encodeproject.org/files/ENCFF646ODW/@@download/ENCFF646ODW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF992MAF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF646ODW 1505990 ENCODE Processing Pipeline 0518ce080ead1be16fae9487a4389a77 https://www.encodeproject.org/files/ENCFF992MAF/@@download/ENCFF992MAF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF802SDO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF611MLV 1530489 ENCODE Processing Pipeline 9e039365825d856044a189cf4398bafe https://www.encodeproject.org/files/ENCFF802SDO/@@download/ENCFF802SDO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF831OQM bigWig signal p-value ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF129ZFR, ENCFF809BGD 905994797 ENCODE Processing Pipeline 47ab910b5fae5eac17c9f22162bc07e2 https://www.encodeproject.org/files/ENCFF831OQM/@@download/ENCFF831OQM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF991GMN bigWig fold change over control ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF129ZFR, ENCFF809BGD 1030419165 ENCODE Processing Pipeline ca813bdb3f765f1f47e468929ccc8496 https://www.encodeproject.org/files/ENCFF991GMN/@@download/ENCFF991GMN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF383YWV bed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF129ZFR, ENCFF809BGD 6785669 ENCODE Processing Pipeline d91d3940ff723bf1695effd8605f7f46 https://www.encodeproject.org/files/ENCFF383YWV/@@download/ENCFF383YWV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF655TAP bigBed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF383YWV 13578765 ENCODE Processing Pipeline af585767962a86b25db25cef983d5ec1 https://www.encodeproject.org/files/ENCFF655TAP/@@download/ENCFF655TAP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF611MLV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF383YWV, ENCFF419RSJ 751797 ENCODE Processing Pipeline 39b67268eb7ebb3aa24619eeb5b8c0d5 https://www.encodeproject.org/files/ENCFF611MLV/@@download/ENCFF611MLV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF903RJR bam unfiltered alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF968PBN 1582631185 ENCODE Processing Pipeline ddeff0cab6ebeeb852ea0387ca399d3f https://www.encodeproject.org/files/ENCFF903RJR/@@download/ENCFF903RJR.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF319UVA bam unfiltered alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF490CEX, ENCFF807MUK 1756221308 ENCODE Processing Pipeline 4b72c963b3733d7e6f394ca1c701e579 https://www.encodeproject.org/files/ENCFF319UVA/@@download/ENCFF319UVA.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF490CEX fastq reads ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 1595092496 Richard Myers, HAIB 5a4a65ac4c0c7a2f3a9fbe5e7d58ff79 SRA:SRR5339638 https://www.encodeproject.org/files/ENCFF490CEX/@@download/ENCFF490CEX.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF968PBN fastq reads ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1426187274 Richard Myers, HAIB 936d62de08639e9784aab886cc5820eb SRA:SRR5339637 https://www.encodeproject.org/files/ENCFF968PBN/@@download/ENCFF968PBN.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF288KSL bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF968PBN 1216851083 ENCODE Processing Pipeline e822e9f22af17af022caa9663bbc5388 https://www.encodeproject.org/files/ENCFF288KSL/@@download/ENCFF288KSL.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF057OSU bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF490CEX, ENCFF807MUK 1349895361 ENCODE Processing Pipeline c75d61e88714331f1b0170a18bfdfb8d https://www.encodeproject.org/files/ENCFF057OSU/@@download/ENCFF057OSU.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF471AEV bigWig signal p-value ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF288KSL 468840798 ENCODE Processing Pipeline 864442139a6cf49b17edaadbfceefae0 https://www.encodeproject.org/files/ENCFF471AEV/@@download/ENCFF471AEV.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF182VPR bigWig fold change over control ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF057OSU 524156140 ENCODE Processing Pipeline c9ad5e19ec9dafe7bb50cf505ca4323f https://www.encodeproject.org/files/ENCFF182VPR/@@download/ENCFF182VPR.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF431KJE bigWig signal p-value ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF057OSU 449584777 ENCODE Processing Pipeline 4100e27b54b688ac9acb1d9b5c3b8127 https://www.encodeproject.org/files/ENCFF431KJE/@@download/ENCFF431KJE.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF429HJR bigWig signal p-value ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF057OSU, ENCFF288KSL 412264585 ENCODE Processing Pipeline 6023b5c0291af25d4040c205d278642c https://www.encodeproject.org/files/ENCFF429HJR/@@download/ENCFF429HJR.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF589UPF bigWig fold change over control ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF288KSL 487043736 ENCODE Processing Pipeline 8b6fd48ab7b29e5c53adcdf48cf5685c https://www.encodeproject.org/files/ENCFF589UPF/@@download/ENCFF589UPF.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF974HXD bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF288KSL 5946806 ENCODE Processing Pipeline 299055779b6b64cebc8b29c4ef789dd4 https://www.encodeproject.org/files/ENCFF974HXD/@@download/ENCFF974HXD.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF875MHD bigBed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF974HXD 13278680 ENCODE Processing Pipeline 4760e4e70ffa811a06c2517b8c1727e7 https://www.encodeproject.org/files/ENCFF875MHD/@@download/ENCFF875MHD.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF414XQK bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF057OSU 6071395 ENCODE Processing Pipeline 84d5a9c8d95bf70ec239648d32980e37 https://www.encodeproject.org/files/ENCFF414XQK/@@download/ENCFF414XQK.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF743RLT bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF057OSU, ENCFF288KSL 6822976 ENCODE Processing Pipeline 73cf958f66db8c6cf956cdc243d754ef https://www.encodeproject.org/files/ENCFF743RLT/@@download/ENCFF743RLT.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF067RJV bigBed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF414XQK 13263176 ENCODE Processing Pipeline 7be9ad3cdbccc4aa9d905b3b6f92e744 https://www.encodeproject.org/files/ENCFF067RJV/@@download/ENCFF067RJV.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF788ULJ bigBed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF743RLT 13164361 ENCODE Processing Pipeline 997bf7dd3a2ddf2946805823cc8fbc2d https://www.encodeproject.org/files/ENCFF788ULJ/@@download/ENCFF788ULJ.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF345LNB bigWig fold change over control ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF057OSU, ENCFF288KSL 880008941 ENCODE Processing Pipeline d28ad5cf3f4548ae1c30ef5acc106b60 https://www.encodeproject.org/files/ENCFF345LNB/@@download/ENCFF345LNB.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF396DOW bigBed narrowPeak conservative idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF834ACA 726760 ENCODE Processing Pipeline 3472665661d5d6130fa150053c7e0a14 https://www.encodeproject.org/files/ENCFF396DOW/@@download/ENCFF396DOW.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF037KBA bed narrowPeak optimal idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF414XQK, ENCFF743RLT, ENCFF974HXD 387181 ENCODE Processing Pipeline 0384e246befd811ed830cf323336589c https://www.encodeproject.org/files/ENCFF037KBA/@@download/ENCFF037KBA.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF834ACA bed narrowPeak conservative idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF414XQK, ENCFF743RLT, ENCFF974HXD 369940 ENCODE Processing Pipeline 6806621458352055fbb82bfae1c4c47d https://www.encodeproject.org/files/ENCFF834ACA/@@download/ENCFF834ACA.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF206TWV bigBed narrowPeak optimal idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF037KBA 752728 ENCODE Processing Pipeline dd32863229048c93703e97b411758eb4 https://www.encodeproject.org/files/ENCFF206TWV/@@download/ENCFF206TWV.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF037LPX bam unfiltered alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF968PBN 1589339792 ENCODE Processing Pipeline c2102943bed1b8066de82373d952efed https://www.encodeproject.org/files/ENCFF037LPX/@@download/ENCFF037LPX.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF601ADC bam unfiltered alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF490CEX, ENCFF643CGH 1763469499 ENCODE Processing Pipeline 60c185c75290ae900787e265878ce0ce https://www.encodeproject.org/files/ENCFF601ADC/@@download/ENCFF601ADC.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF810AAT bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF490CEX, ENCFF643CGH 1349864211 ENCODE Processing Pipeline c9ff43eaaf89ef29b1c7eb8e8c7fd291 https://www.encodeproject.org/files/ENCFF810AAT/@@download/ENCFF810AAT.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF479GFZ bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF968PBN 1216753924 ENCODE Processing Pipeline 1f11d7cf61918649794fefcd27c6819d https://www.encodeproject.org/files/ENCFF479GFZ/@@download/ENCFF479GFZ.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF064BUM bigWig signal p-value ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF810AAT 451137392 ENCODE Processing Pipeline b5e6cabd00633d6356379c066032bc42 https://www.encodeproject.org/files/ENCFF064BUM/@@download/ENCFF064BUM.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF541ZYD bigWig signal p-value ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF479GFZ, ENCFF582CVJ 468985828 ENCODE Processing Pipeline 3d032b07a5a746c0a956e628045dd3f7 https://www.encodeproject.org/files/ENCFF541ZYD/@@download/ENCFF541ZYD.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF018YZH bigWig signal p-value ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF479GFZ, ENCFF582CVJ, ENCFF810AAT 420495960 ENCODE Processing Pipeline e40a04f6492cdd69b278924899e99ad0 https://www.encodeproject.org/files/ENCFF018YZH/@@download/ENCFF018YZH.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF857PDJ bigWig fold change over control ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF479GFZ, ENCFF582CVJ 493032671 ENCODE Processing Pipeline 0a44cc7b85d770e434077a5683775ad9 https://www.encodeproject.org/files/ENCFF857PDJ/@@download/ENCFF857PDJ.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF774CIA bigWig fold change over control ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF810AAT 531126226 ENCODE Processing Pipeline 33f28afdfebfb0d8978ad38e5e6ce0fe https://www.encodeproject.org/files/ENCFF774CIA/@@download/ENCFF774CIA.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF397LLR bigWig fold change over control ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF479GFZ, ENCFF582CVJ, ENCFF810AAT 897825516 ENCODE Processing Pipeline 2ecd3338cb8c5facd8b937ae7933422b https://www.encodeproject.org/files/ENCFF397LLR/@@download/ENCFF397LLR.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF825FSJ bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF810AAT 5951536 ENCODE Processing Pipeline 4249768e5ad644123ab3fd4b008ef52c https://www.encodeproject.org/files/ENCFF825FSJ/@@download/ENCFF825FSJ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF785HOC bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF479GFZ, ENCFF582CVJ 5775759 ENCODE Processing Pipeline 554927889a7dc4f2007e7a4e2ba5ea95 https://www.encodeproject.org/files/ENCFF785HOC/@@download/ENCFF785HOC.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF302URQ bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF479GFZ, ENCFF582CVJ, ENCFF810AAT 6666369 ENCODE Processing Pipeline 822736b90c18461724fa9f0d1f2a768f https://www.encodeproject.org/files/ENCFF302URQ/@@download/ENCFF302URQ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF372FAF bigBed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF785HOC 13230474 ENCODE Processing Pipeline 63f87697ac7a33ebb2473bbc5d4886dd https://www.encodeproject.org/files/ENCFF372FAF/@@download/ENCFF372FAF.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF311ZFI bigBed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF825FSJ 13239422 ENCODE Processing Pipeline 5ba8e062616f2a40304aafd041c73bc9 https://www.encodeproject.org/files/ENCFF311ZFI/@@download/ENCFF311ZFI.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF482RHW bed narrowPeak conservative idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF302URQ, ENCFF419RSJ, ENCFF785HOC, ENCFF825FSJ 369431 ENCODE Processing Pipeline 2bf0a7b4f6d8163ee212bcbcafcda19d https://www.encodeproject.org/files/ENCFF482RHW/@@download/ENCFF482RHW.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF007SPJ bigBed narrowPeak conservative idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF482RHW 728229 ENCODE Processing Pipeline a067234c5ce543568d1fd9a29fdedc12 https://www.encodeproject.org/files/ENCFF007SPJ/@@download/ENCFF007SPJ.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF661WFA bed narrowPeak optimal idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF302URQ, ENCFF419RSJ, ENCFF785HOC, ENCFF825FSJ 379783 ENCODE Processing Pipeline 748a1327fac6b0330ff8a20704b016b0 https://www.encodeproject.org/files/ENCFF661WFA/@@download/ENCFF661WFA.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF415ZNE bigBed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF302URQ 13168741 ENCODE Processing Pipeline 9c36c7dc9ac5cb00923b5c515e43b4b0 https://www.encodeproject.org/files/ENCFF415ZNE/@@download/ENCFF415ZNE.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF798VML bigBed narrowPeak optimal idr thresholded peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF661WFA 746876 ENCODE Processing Pipeline 7ac66c220a5fadd2f4e50283d01e8f2b https://www.encodeproject.org/files/ENCFF798VML/@@download/ENCFF798VML.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF596VRG bam unfiltered alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF141CZI, ENCFF807MUK 1009224982 ENCODE Processing Pipeline 030cd46a80deabb8dabaebee2761a09d https://www.encodeproject.org/files/ENCFF596VRG/@@download/ENCFF596VRG.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF901PNK bam unfiltered alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF038QTK, ENCFF807MUK 693570765 ENCODE Processing Pipeline 69d5bbda8d7aeb6ac2563f92b9e98a91 https://www.encodeproject.org/files/ENCFF901PNK/@@download/ENCFF901PNK.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF038QTK fastq reads ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 654939056 Kevin White, UChicago 13953f47e563a2d7dd2ee4418c11992a SRA:SRR6213529 https://www.encodeproject.org/files/ENCFF038QTK/@@download/ENCFF038QTK.fastq.gz Illumina HiSeq 2000 /files/ENCFF532RGH/ released control low read depth, low read depth, missing genetic modification characterization ENCFF141CZI fastq reads ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 993142835 Kevin White, UChicago 1a5a591864bd0ca61de2ef4178c68676 SRA:SRR6213530 https://www.encodeproject.org/files/ENCFF141CZI/@@download/ENCFF141CZI.fastq.gz Illumina HiSeq 2000 /files/ENCFF532RGH/ released control low read depth, low read depth, missing genetic modification characterization ENCFF523PEG bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF038QTK, ENCFF807MUK 509582793 ENCODE Processing Pipeline b7423c1e10fc5765ef65e93afac27ab4 https://www.encodeproject.org/files/ENCFF523PEG/@@download/ENCFF523PEG.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF918WMQ bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF141CZI, ENCFF807MUK 704480023 ENCODE Processing Pipeline 538397c8d25cae1f36bffc6fa983904f https://www.encodeproject.org/files/ENCFF918WMQ/@@download/ENCFF918WMQ.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF585WCX bigWig fold change over control ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF523PEG, ENCFF773XAD, ENCFF918WMQ 481017172 ENCODE Processing Pipeline 462f04d6338184ad4eb5062e1ba36def https://www.encodeproject.org/files/ENCFF585WCX/@@download/ENCFF585WCX.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF083HUN bigWig signal p-value ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF773XAD, ENCFF918WMQ 311983511 ENCODE Processing Pipeline af18d8d275d1fd396624d8c52893981c https://www.encodeproject.org/files/ENCFF083HUN/@@download/ENCFF083HUN.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF634FDR bigWig fold change over control ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF523PEG, ENCFF773XAD 248102343 ENCODE Processing Pipeline 9af9adb173d3110ab476cac115ea3c2e https://www.encodeproject.org/files/ENCFF634FDR/@@download/ENCFF634FDR.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF058DFD bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF523PEG, ENCFF773XAD, ENCFF918WMQ 6166034 ENCODE Processing Pipeline 76e0de8a5ea139b2ab650f2a5c6e81cb https://www.encodeproject.org/files/ENCFF058DFD/@@download/ENCFF058DFD.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF445GAE bigWig signal p-value ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF523PEG, ENCFF773XAD 344368029 ENCODE Processing Pipeline f0a6ff987447909137ecfc8401d398ca https://www.encodeproject.org/files/ENCFF445GAE/@@download/ENCFF445GAE.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF766EAB bigWig signal p-value ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF523PEG, ENCFF773XAD, ENCFF918WMQ 317694964 ENCODE Processing Pipeline e81c1acf32a9583b9bc4f958dc4887d6 https://www.encodeproject.org/files/ENCFF766EAB/@@download/ENCFF766EAB.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF427NNH bigWig fold change over control ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF773XAD, ENCFF918WMQ 313372025 ENCODE Processing Pipeline c2acecc40a5db0b262516aa36d4b2d90 https://www.encodeproject.org/files/ENCFF427NNH/@@download/ENCFF427NNH.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF138XJT bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF523PEG, ENCFF773XAD 5167428 ENCODE Processing Pipeline 1a4fc262ff8b6b7d1b7a7af59ee3373f https://www.encodeproject.org/files/ENCFF138XJT/@@download/ENCFF138XJT.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF969ETX bigBed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF058DFD 13183803 ENCODE Processing Pipeline 1835bc4b6b65d2aad8ea220cbecad672 https://www.encodeproject.org/files/ENCFF969ETX/@@download/ENCFF969ETX.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF165PIM bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF773XAD, ENCFF918WMQ 5438648 ENCODE Processing Pipeline 45571ed9fb10e650d229fc35923273d2 https://www.encodeproject.org/files/ENCFF165PIM/@@download/ENCFF165PIM.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF367TKT bigBed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF165PIM 12980001 ENCODE Processing Pipeline f7af12e30472542f522cc95ee6489731 https://www.encodeproject.org/files/ENCFF367TKT/@@download/ENCFF367TKT.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF151PQY bigBed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF138XJT 12815059 ENCODE Processing Pipeline c2cbf6985751940485cffe948f5ee90d https://www.encodeproject.org/files/ENCFF151PQY/@@download/ENCFF151PQY.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF888BVK bam unfiltered alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF038QTK, ENCFF643CGH 695742978 ENCODE Processing Pipeline 92fd62893dd0f94b84210f861d316bb5 https://www.encodeproject.org/files/ENCFF888BVK/@@download/ENCFF888BVK.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF835WTF bam unfiltered alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF141CZI, ENCFF643CGH 1012254829 ENCODE Processing Pipeline 42e4f76d4710980adc9a3cdbb0853556 https://www.encodeproject.org/files/ENCFF835WTF/@@download/ENCFF835WTF.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF979BFW bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF038QTK, ENCFF643CGH 509264505 ENCODE Processing Pipeline b9aead1ec3608cec4dfbf28ad19b4e37 https://www.encodeproject.org/files/ENCFF979BFW/@@download/ENCFF979BFW.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF102ZOS bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF141CZI, ENCFF643CGH 704106450 ENCODE Processing Pipeline e13ac285bc4f21e620cc0e3dd76bd754 https://www.encodeproject.org/files/ENCFF102ZOS/@@download/ENCFF102ZOS.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF310UTT bigWig signal p-value ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF102ZOS, ENCFF465FJI 337513132 ENCODE Processing Pipeline 24a53009e45d2b5422a94ec971cf98a4 https://www.encodeproject.org/files/ENCFF310UTT/@@download/ENCFF310UTT.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF028VRH bigWig signal p-value ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF102ZOS, ENCFF465FJI, ENCFF979BFW 318786310 ENCODE Processing Pipeline 58b175ca1763112cbceb4be6a567fb2d https://www.encodeproject.org/files/ENCFF028VRH/@@download/ENCFF028VRH.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF522ODV bigWig fold change over control ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF102ZOS, ENCFF465FJI 326282342 ENCODE Processing Pipeline 34df7a985f769388539af4206337baa9 https://www.encodeproject.org/files/ENCFF522ODV/@@download/ENCFF522ODV.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF457UYN bigWig fold change over control ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF102ZOS, ENCFF465FJI, ENCFF979BFW 483769143 ENCODE Processing Pipeline 89058d126bf03c46a670c90ee1637e43 https://www.encodeproject.org/files/ENCFF457UYN/@@download/ENCFF457UYN.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF669LQE bigWig signal p-value ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF465FJI, ENCFF979BFW 278514636 ENCODE Processing Pipeline 799abb434d33a51101c007169531307b https://www.encodeproject.org/files/ENCFF669LQE/@@download/ENCFF669LQE.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF706PYW bigWig fold change over control ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF465FJI, ENCFF979BFW 249703631 ENCODE Processing Pipeline 85256afb6307444f1ee71e4909548a67 https://www.encodeproject.org/files/ENCFF706PYW/@@download/ENCFF706PYW.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF576XRJ bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF465FJI, ENCFF979BFW 5012873 ENCODE Processing Pipeline 26f03483bb43207ce5e0c83e6c75bc74 https://www.encodeproject.org/files/ENCFF576XRJ/@@download/ENCFF576XRJ.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF975ZSW bigBed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF460FNJ 12868275 ENCODE Processing Pipeline 55fd54949f524e625578a92d7face449 https://www.encodeproject.org/files/ENCFF975ZSW/@@download/ENCFF975ZSW.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF509LOB bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF102ZOS, ENCFF465FJI, ENCFF979BFW 5963583 ENCODE Processing Pipeline e19d9d7e5141004d4dabbe738bc7543e https://www.encodeproject.org/files/ENCFF509LOB/@@download/ENCFF509LOB.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF935UJJ bigBed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF509LOB 13149413 ENCODE Processing Pipeline 970649e297944bc2328487a8bbeb4988 https://www.encodeproject.org/files/ENCFF935UJJ/@@download/ENCFF935UJJ.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF961KUU bigBed narrowPeak optimal idr thresholded peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF208VCB 680286 ENCODE Processing Pipeline 8578fd1ec67dbaf727cf39bbdc66c044 https://www.encodeproject.org/files/ENCFF961KUU/@@download/ENCFF961KUU.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF460FNJ bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF102ZOS, ENCFF465FJI 5229612 ENCODE Processing Pipeline 3c48e1373f45127091e14e9a8e34d41f https://www.encodeproject.org/files/ENCFF460FNJ/@@download/ENCFF460FNJ.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF600FDD bigBed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF576XRJ 12679088 ENCODE Processing Pipeline 0f3a442c2f3f798cb7aca413a470b596 https://www.encodeproject.org/files/ENCFF600FDD/@@download/ENCFF600FDD.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF208VCB bed narrowPeak optimal idr thresholded peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF460FNJ, ENCFF509LOB, ENCFF576XRJ 313712 ENCODE Processing Pipeline c2113a6ba83d8fda7f552be4c72912be https://www.encodeproject.org/files/ENCFF208VCB/@@download/ENCFF208VCB.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF287GHP bigBed narrowPeak conservative idr thresholded peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF003GOA 486548 ENCODE Processing Pipeline 372cbbbd61930192117d3aaf8efd872c https://www.encodeproject.org/files/ENCFF287GHP/@@download/ENCFF287GHP.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF422EKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF417TXD 486711 ENCODE Processing Pipeline dd652facdb390a1c8491ce4aab6a6f2d https://www.encodeproject.org/files/ENCFF422EKQ/@@download/ENCFF422EKQ.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF003GOA bed narrowPeak conservative idr thresholded peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF058DFD, ENCFF138XJT, ENCFF165PIM 266886 ENCODE Processing Pipeline 603d579136fb94a8a916673206def8bc https://www.encodeproject.org/files/ENCFF003GOA/@@download/ENCFF003GOA.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF417TXD bed narrowPeak optimal idr thresholded peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF058DFD, ENCFF138XJT, ENCFF165PIM 267307 ENCODE Processing Pipeline b55f438e6fa9a3b6ae13846dda2ca4b7 https://www.encodeproject.org/files/ENCFF417TXD/@@download/ENCFF417TXD.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF623RJM fastq reads ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 1 ENCFF498UGH 6306335081 Michael Snyder, Stanford fca816eb4a293c783736882ae51cfc47 https://www.encodeproject.org/files/ENCFF623RJM/@@download/ENCFF623RJM.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF498UGH fastq reads ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 2 ENCFF623RJM 6790114375 Michael Snyder, Stanford a27f450464ae30a08a195037bb2d459e https://www.encodeproject.org/files/ENCFF498UGH/@@download/ENCFF498UGH.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF067SVP fastq reads ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 2 ENCFF044ZEJ 4539560126 Michael Snyder, Stanford 6ecb022d4ae82996cfbc761820b5456f https://www.encodeproject.org/files/ENCFF067SVP/@@download/ENCFF067SVP.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF044ZEJ fastq reads ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 1 ENCFF067SVP 4032202728 Michael Snyder, Stanford 283823cd6cbc7b3f2117da061809e34a https://www.encodeproject.org/files/ENCFF044ZEJ/@@download/ENCFF044ZEJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF033XEV bam unfiltered alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 100 ENCFF044ZEJ, ENCFF067SVP, ENCFF807MUK 7196248141 ENCODE Processing Pipeline 9288f931d502f74dc95b09dc148a2826 https://www.encodeproject.org/files/ENCFF033XEV/@@download/ENCFF033XEV.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF258QKU bam unfiltered alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 100 ENCFF044ZEJ, ENCFF067SVP, ENCFF643CGH 7187997725 ENCODE Processing Pipeline 3184c9679a0e817e526b86e525bf6be3 https://www.encodeproject.org/files/ENCFF258QKU/@@download/ENCFF258QKU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF762XBT bam unfiltered alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 100 ENCFF498UGH, ENCFF623RJM, ENCFF643CGH 11417773861 ENCODE Processing Pipeline 9a30256df90e5c29c403da79dee98edb https://www.encodeproject.org/files/ENCFF762XBT/@@download/ENCFF762XBT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF815ASL bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 100 ENCFF044ZEJ, ENCFF067SVP, ENCFF807MUK 2736449665 ENCODE Processing Pipeline 05076a4cd674edff54f2c6eab95a896a https://www.encodeproject.org/files/ENCFF815ASL/@@download/ENCFF815ASL.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF774SZE bam unfiltered alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 100 ENCFF498UGH, ENCFF623RJM, ENCFF807MUK 11418815029 ENCODE Processing Pipeline eb5132788a99b9cd4586cb1d0e67dc0f https://www.encodeproject.org/files/ENCFF774SZE/@@download/ENCFF774SZE.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF523QZM bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 100 ENCFF044ZEJ, ENCFF067SVP, ENCFF643CGH 2737923457 ENCODE Processing Pipeline a5c8fe0ae9db3f4059c8b8f2f892cba5 https://www.encodeproject.org/files/ENCFF523QZM/@@download/ENCFF523QZM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF143HRA bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 100 ENCFF498UGH, ENCFF623RJM, ENCFF643CGH 6171626994 ENCODE Processing Pipeline c4e2d11e5668489f134866f35b421590 https://www.encodeproject.org/files/ENCFF143HRA/@@download/ENCFF143HRA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF763TBX bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 100 ENCFF498UGH, ENCFF623RJM, ENCFF807MUK 6164686432 ENCODE Processing Pipeline 62a5e1595f885d8d03a7662a03dd7aa2 https://www.encodeproject.org/files/ENCFF763TBX/@@download/ENCFF763TBX.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF477GZL bigWig signal p-value ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF447KVS, ENCFF763TBX, ENCFF823USR 2075442984 ENCODE Processing Pipeline 1b35fd442afbbda164e0d58c59e3f174 https://www.encodeproject.org/files/ENCFF477GZL/@@download/ENCFF477GZL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF594KBE bigWig signal p-value ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF447KVS, ENCFF815ASL, ENCFF823USR 1413185685 ENCODE Processing Pipeline 7bd20b83f39e096a59dbae2a2fa2e47a https://www.encodeproject.org/files/ENCFF594KBE/@@download/ENCFF594KBE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF228CBJ bigWig signal p-value ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF447KVS, ENCFF763TBX, ENCFF815ASL, ENCFF823USR 2207100432 ENCODE Processing Pipeline ffff9cf4416310296bade5a336776fd6 https://www.encodeproject.org/files/ENCFF228CBJ/@@download/ENCFF228CBJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF824XAL bigWig fold change over control ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF447KVS, ENCFF763TBX, ENCFF823USR 2102315257 ENCODE Processing Pipeline f278c62c1ecfa5fa1c04ff955b65d3db https://www.encodeproject.org/files/ENCFF824XAL/@@download/ENCFF824XAL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF723OTP bigWig fold change over control ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF447KVS, ENCFF815ASL, ENCFF823USR 1353650840 ENCODE Processing Pipeline 7e1351dbe6965fbd776898bfbf4f8346 https://www.encodeproject.org/files/ENCFF723OTP/@@download/ENCFF723OTP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF145WHY bigWig fold change over control ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF447KVS, ENCFF763TBX, ENCFF815ASL, ENCFF823USR 2399877312 ENCODE Processing Pipeline 0472bb169d5e8a225149fc73cefc3330 https://www.encodeproject.org/files/ENCFF145WHY/@@download/ENCFF145WHY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF863GRL bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF447KVS, ENCFF815ASL, ENCFF823USR 7074759 ENCODE Processing Pipeline 5263cdd4b03cbdcb27cb531a43af6cc7 https://www.encodeproject.org/files/ENCFF863GRL/@@download/ENCFF863GRL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF161DQL bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF447KVS, ENCFF763TBX, ENCFF823USR 7269367 ENCODE Processing Pipeline ef22e925cb69dd55cd16da61d179a48e https://www.encodeproject.org/files/ENCFF161DQL/@@download/ENCFF161DQL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF874LLH bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF447KVS, ENCFF763TBX, ENCFF815ASL, ENCFF823USR 7322691 ENCODE Processing Pipeline d20f0376826d264d42e0f069cf2a521a https://www.encodeproject.org/files/ENCFF874LLH/@@download/ENCFF874LLH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF790ANG bigBed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF161DQL 13802991 ENCODE Processing Pipeline 0ad7f615558bda259fee522f0016424d https://www.encodeproject.org/files/ENCFF790ANG/@@download/ENCFF790ANG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF128XWJ bigBed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF863GRL 13636582 ENCODE Processing Pipeline c88441a24d1cd4485ff526867ccd3c31 https://www.encodeproject.org/files/ENCFF128XWJ/@@download/ENCFF128XWJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF493MKW bigBed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF874LLH 13872429 ENCODE Processing Pipeline 3603dbb98fb1f5e2a284a937b4808758 https://www.encodeproject.org/files/ENCFF493MKW/@@download/ENCFF493MKW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF086LTL bigBed narrowPeak conservative idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF503TKI 1759838 ENCODE Processing Pipeline 9440447c07facd601ba5315418f92d4a https://www.encodeproject.org/files/ENCFF086LTL/@@download/ENCFF086LTL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF503TKI bed narrowPeak conservative idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF161DQL, ENCFF863GRL, ENCFF874LLH 885685 ENCODE Processing Pipeline 9e0936cc2238129c206194d994f446cd https://www.encodeproject.org/files/ENCFF503TKI/@@download/ENCFF503TKI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF313TUJ bed narrowPeak optimal idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF161DQL, ENCFF863GRL, ENCFF874LLH 1016007 ENCODE Processing Pipeline 295d315f78e8a854456cd97621e2911d https://www.encodeproject.org/files/ENCFF313TUJ/@@download/ENCFF313TUJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF324FTX bigBed narrowPeak optimal idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF313TUJ 1961837 ENCODE Processing Pipeline eb3c400e4bb5c0b050414a126cd5060a https://www.encodeproject.org/files/ENCFF324FTX/@@download/ENCFF324FTX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF031PDO bigWig signal p-value ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF143HRA, ENCFF191XYH, ENCFF746SKT 1891181938 ENCODE Processing Pipeline b51628ceb981786c38a7d270936a2047 https://www.encodeproject.org/files/ENCFF031PDO/@@download/ENCFF031PDO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF354SHN bigWig signal p-value ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF191XYH, ENCFF523QZM, ENCFF746SKT 1427926092 ENCODE Processing Pipeline cacf445d84d1c0e98df65f3fa8556eea https://www.encodeproject.org/files/ENCFF354SHN/@@download/ENCFF354SHN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF560ETL bigWig signal p-value ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF143HRA, ENCFF191XYH, ENCFF523QZM, ENCFF746SKT 2183750698 ENCODE Processing Pipeline 2b36b97408d7eca21c744f0c8ead5d1d https://www.encodeproject.org/files/ENCFF560ETL/@@download/ENCFF560ETL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF176AFY bigWig fold change over control ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF143HRA, ENCFF191XYH, ENCFF746SKT 2086327631 ENCODE Processing Pipeline 7a127c890e5f0876e1f8597179f41ed2 https://www.encodeproject.org/files/ENCFF176AFY/@@download/ENCFF176AFY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF982XKG bigWig fold change over control ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF191XYH, ENCFF523QZM, ENCFF746SKT 1350588167 ENCODE Processing Pipeline 0517f62619d0c2c95d2539dd77d2c80c https://www.encodeproject.org/files/ENCFF982XKG/@@download/ENCFF982XKG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF703CUQ bigWig fold change over control ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF143HRA, ENCFF191XYH, ENCFF523QZM, ENCFF746SKT 2375367411 ENCODE Processing Pipeline 056a8806c976b08ead0bec9dff8272d0 https://www.encodeproject.org/files/ENCFF703CUQ/@@download/ENCFF703CUQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF891ELE bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF143HRA, ENCFF191XYH, ENCFF746SKT 7267374 ENCODE Processing Pipeline 86e2e21cdb1755be23231ca773d79f92 https://www.encodeproject.org/files/ENCFF891ELE/@@download/ENCFF891ELE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF116LXB bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF143HRA, ENCFF191XYH, ENCFF523QZM, ENCFF746SKT 7328963 ENCODE Processing Pipeline b453e1b0e02f0fe5ca830f6e86c54060 https://www.encodeproject.org/files/ENCFF116LXB/@@download/ENCFF116LXB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF955EHX bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF191XYH, ENCFF523QZM, ENCFF746SKT 7024022 ENCODE Processing Pipeline 546d39cf8b953376b479ca9635228bca https://www.encodeproject.org/files/ENCFF955EHX/@@download/ENCFF955EHX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF788XMY bigBed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF116LXB 13892265 ENCODE Processing Pipeline 010298241d676a7e1faa48432d3bf830 https://www.encodeproject.org/files/ENCFF788XMY/@@download/ENCFF788XMY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF510UQY bigBed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF891ELE 13825067 ENCODE Processing Pipeline 178640ad9ebc8938a075385989bb9fd4 https://www.encodeproject.org/files/ENCFF510UQY/@@download/ENCFF510UQY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF862RFB bigBed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF955EHX 13650368 ENCODE Processing Pipeline aff9a282e0e6e7a4f472c3b78b592ffe https://www.encodeproject.org/files/ENCFF862RFB/@@download/ENCFF862RFB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF169CKY bigBed narrowPeak conservative idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF909LIE 1759041 ENCODE Processing Pipeline 893041335ea92218cfc8693c6380a683 https://www.encodeproject.org/files/ENCFF169CKY/@@download/ENCFF169CKY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF625IUE bed narrowPeak optimal idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF116LXB, ENCFF419RSJ, ENCFF891ELE, ENCFF955EHX 1033717 ENCODE Processing Pipeline 1cdb6a3b0eb12100b5ea1c3f2f97baec https://www.encodeproject.org/files/ENCFF625IUE/@@download/ENCFF625IUE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF909LIE bed narrowPeak conservative idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF116LXB, ENCFF419RSJ, ENCFF891ELE, ENCFF955EHX 884335 ENCODE Processing Pipeline 1783ca1a2071872bfda0365ddd2d1c69 https://www.encodeproject.org/files/ENCFF909LIE/@@download/ENCFF909LIE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF325SFF bigBed narrowPeak optimal idr thresholded peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF625IUE 1988546 ENCODE Processing Pipeline 9f39625bdc2c6809627c0758c4eedb64 https://www.encodeproject.org/files/ENCFF325SFF/@@download/ENCFF325SFF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF735PSR bam unfiltered alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 100 ENCFF276AYD, ENCFF519SRC, ENCFF807MUK 5314749667 ENCODE Processing Pipeline 54e916f886952ea01577d933569b4261 https://www.encodeproject.org/files/ENCFF735PSR/@@download/ENCFF735PSR.bam hg19 released borderline replicate concordance ENCFF113ERD bam unfiltered alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 100 ENCFF504AIH, ENCFF590TAH, ENCFF807MUK 5735149819 ENCODE Processing Pipeline 8687c131992fa9be548003aa6ae84e4b https://www.encodeproject.org/files/ENCFF113ERD/@@download/ENCFF113ERD.bam hg19 released borderline replicate concordance ENCFF276AYD fastq reads ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF519SRC 2431318871 Michael Snyder, Stanford 67b81ef73d0ee3829b4b6947ad43ce9a SRA:SRR5111801 https://www.encodeproject.org/files/ENCFF276AYD/@@download/ENCFF276AYD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance ENCFF519SRC fastq reads ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF276AYD 2437227767 Michael Snyder, Stanford 38869be97aaa384846cea4cd8dc51192 SRA:SRR5111801 https://www.encodeproject.org/files/ENCFF519SRC/@@download/ENCFF519SRC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance ENCFF590TAH fastq reads ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF504AIH 2610784610 Michael Snyder, Stanford 7591fe9a3d5feecedfb3e342978556bc SRA:SRR5111800 https://www.encodeproject.org/files/ENCFF590TAH/@@download/ENCFF590TAH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance ENCFF504AIH fastq reads ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF590TAH 2605858683 Michael Snyder, Stanford af8cfe186781027a66b5145afe3fe91b SRA:SRR5111800 https://www.encodeproject.org/files/ENCFF504AIH/@@download/ENCFF504AIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance ENCFF072EMM bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 100 ENCFF276AYD, ENCFF519SRC, ENCFF807MUK 4325134973 ENCODE Processing Pipeline 054db2e0ea1c6493e8706a30abdd0d5d https://www.encodeproject.org/files/ENCFF072EMM/@@download/ENCFF072EMM.bam hg19 released borderline replicate concordance ENCFF581KEJ bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 100 ENCFF504AIH, ENCFF590TAH, ENCFF807MUK 5000324879 ENCODE Processing Pipeline ac616ee379d3a5085ca0aa7a848b4851 https://www.encodeproject.org/files/ENCFF581KEJ/@@download/ENCFF581KEJ.bam hg19 released borderline replicate concordance ENCFF528PLH bigWig signal p-value ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF072EMM, ENCFF581ZJL 1152155972 ENCODE Processing Pipeline 664db732b21eb930094b112fba672841 https://www.encodeproject.org/files/ENCFF528PLH/@@download/ENCFF528PLH.bigWig hg19 released borderline replicate concordance ENCFF431SYT bigWig signal p-value ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF581KEJ 1140042596 ENCODE Processing Pipeline 44841c2b2f31d21f07fce515dec967bf https://www.encodeproject.org/files/ENCFF431SYT/@@download/ENCFF431SYT.bigWig hg19 released borderline replicate concordance ENCFF711XPS bigWig signal p-value ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF072EMM, ENCFF581KEJ, ENCFF581ZJL 2027931681 ENCODE Processing Pipeline 95ff92df2b105674a6767e5ef35a38f8 https://www.encodeproject.org/files/ENCFF711XPS/@@download/ENCFF711XPS.bigWig hg19 released borderline replicate concordance ENCFF522KBD bigWig fold change over control ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF072EMM, ENCFF581ZJL 1207093166 ENCODE Processing Pipeline 9cb498bdafa073da934f065cd8d93132 https://www.encodeproject.org/files/ENCFF522KBD/@@download/ENCFF522KBD.bigWig hg19 released borderline replicate concordance ENCFF762QKT bigWig fold change over control ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF581KEJ 1235859010 ENCODE Processing Pipeline d10b007cd0063810a690b7ec84b308fb https://www.encodeproject.org/files/ENCFF762QKT/@@download/ENCFF762QKT.bigWig hg19 released borderline replicate concordance ENCFF889PGD bigWig fold change over control ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF072EMM, ENCFF581KEJ, ENCFF581ZJL 2190283184 ENCODE Processing Pipeline 940023d38e8fb09cc1bf7576bc106004 https://www.encodeproject.org/files/ENCFF889PGD/@@download/ENCFF889PGD.bigWig hg19 released borderline replicate concordance ENCFF214PFV bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF072EMM, ENCFF581ZJL 6498662 ENCODE Processing Pipeline 3f11270a3c900c60b30b8dba11743b2a https://www.encodeproject.org/files/ENCFF214PFV/@@download/ENCFF214PFV.bed.gz hg19 released borderline replicate concordance ENCFF277IZH bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF581KEJ 6638468 ENCODE Processing Pipeline 36d9bfe21968a5410a8c3ac308937f8d https://www.encodeproject.org/files/ENCFF277IZH/@@download/ENCFF277IZH.bed.gz hg19 released borderline replicate concordance ENCFF898TYH bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF072EMM, ENCFF581KEJ, ENCFF581ZJL 7171522 ENCODE Processing Pipeline 70feaec10f89eef19f742fbc30a0c91b https://www.encodeproject.org/files/ENCFF898TYH/@@download/ENCFF898TYH.bed.gz hg19 released borderline replicate concordance ENCFF972CDY bigBed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF214PFV 11129903 ENCODE Processing Pipeline 1bd1602b19808eb16b007573f9ee6250 https://www.encodeproject.org/files/ENCFF972CDY/@@download/ENCFF972CDY.bigBed hg19 released borderline replicate concordance ENCFF753WYI bigBed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF277IZH 11007196 ENCODE Processing Pipeline fc3e5985bb886e0bc52ce0b8a3e62304 https://www.encodeproject.org/files/ENCFF753WYI/@@download/ENCFF753WYI.bigBed hg19 released borderline replicate concordance ENCFF300XAN bed narrowPeak conservative idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF214PFV, ENCFF277IZH, ENCFF898TYH 22178 ENCODE Processing Pipeline 66e09f01191216e74310e8f01ff790e2 https://www.encodeproject.org/files/ENCFF300XAN/@@download/ENCFF300XAN.bed.gz hg19 released borderline replicate concordance ENCFF671AFL bigBed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF898TYH 10938016 ENCODE Processing Pipeline 5ff97500c04fbe63b08563bed1c0ff65 https://www.encodeproject.org/files/ENCFF671AFL/@@download/ENCFF671AFL.bigBed hg19 released borderline replicate concordance ENCFF803RBG bigBed narrowPeak conservative idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF300XAN 90632 ENCODE Processing Pipeline a49be6b60de9bccb98a1a20c88fc6a3c https://www.encodeproject.org/files/ENCFF803RBG/@@download/ENCFF803RBG.bigBed hg19 released borderline replicate concordance ENCFF246HIU bed narrowPeak optimal idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF214PFV, ENCFF277IZH, ENCFF898TYH 51934 ENCODE Processing Pipeline 93b69ccf7b369f691b390eff17a17422 https://www.encodeproject.org/files/ENCFF246HIU/@@download/ENCFF246HIU.bed.gz hg19 released borderline replicate concordance ENCFF778NRA bigBed narrowPeak optimal idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF246HIU 158794 ENCODE Processing Pipeline 1a8c7ba7084b90abd5db60a628618a38 https://www.encodeproject.org/files/ENCFF778NRA/@@download/ENCFF778NRA.bigBed hg19 released borderline replicate concordance ENCFF887DZF bam unfiltered alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 100 ENCFF276AYD, ENCFF519SRC, ENCFF643CGH 5320730645 ENCODE Processing Pipeline 4c7c1aaf93a3ad26cc66da8cc9ff7168 https://www.encodeproject.org/files/ENCFF887DZF/@@download/ENCFF887DZF.bam GRCh38 released borderline replicate concordance ENCFF416CRZ bam unfiltered alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 100 ENCFF504AIH, ENCFF590TAH, ENCFF643CGH 5741055157 ENCODE Processing Pipeline 223ef2ed5399d1754202ff776aeb9a09 https://www.encodeproject.org/files/ENCFF416CRZ/@@download/ENCFF416CRZ.bam GRCh38 released borderline replicate concordance ENCFF954HWS bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 100 ENCFF276AYD, ENCFF519SRC, ENCFF643CGH 4327733273 ENCODE Processing Pipeline 4ebdd43bf31a11b4144d18352c731b8e https://www.encodeproject.org/files/ENCFF954HWS/@@download/ENCFF954HWS.bam GRCh38 released borderline replicate concordance ENCFF124RUL bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 100 ENCFF504AIH, ENCFF590TAH, ENCFF643CGH 5004185476 ENCODE Processing Pipeline f11feae795ee1f8be63145b6f88f0ae5 https://www.encodeproject.org/files/ENCFF124RUL/@@download/ENCFF124RUL.bam GRCh38 released borderline replicate concordance ENCFF445GBD bigWig signal p-value ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF910IKB, ENCFF954HWS 1076235241 ENCODE Processing Pipeline 7138fbe04a0791cf3fdb970d3bac4ef5 https://www.encodeproject.org/files/ENCFF445GBD/@@download/ENCFF445GBD.bigWig GRCh38 released borderline replicate concordance ENCFF079WIO bigWig signal p-value ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF124RUL, ENCFF227IZS 975338167 ENCODE Processing Pipeline 24de819f695bec25c4528e8dfb237515 https://www.encodeproject.org/files/ENCFF079WIO/@@download/ENCFF079WIO.bigWig GRCh38 released borderline replicate concordance ENCFF775ZKB bigWig signal p-value ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF124RUL, ENCFF227IZS, ENCFF910IKB, ENCFF954HWS 1820335169 ENCODE Processing Pipeline 97ca1d0c116a5e3230535e66aa7c4de6 https://www.encodeproject.org/files/ENCFF775ZKB/@@download/ENCFF775ZKB.bigWig GRCh38 released borderline replicate concordance ENCFF940WKD bigWig fold change over control ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF910IKB, ENCFF954HWS 1207629693 ENCODE Processing Pipeline 3bc69588c8d1700691b2073ba2e96f1e https://www.encodeproject.org/files/ENCFF940WKD/@@download/ENCFF940WKD.bigWig GRCh38 released borderline replicate concordance ENCFF778UYZ bigWig fold change over control ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF124RUL, ENCFF227IZS 1236618609 ENCODE Processing Pipeline cc7ae71d98eefc35f2330caa256561f8 https://www.encodeproject.org/files/ENCFF778UYZ/@@download/ENCFF778UYZ.bigWig GRCh38 released borderline replicate concordance ENCFF321FEG bigWig fold change over control ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF124RUL, ENCFF227IZS, ENCFF910IKB, ENCFF954HWS 2207783603 ENCODE Processing Pipeline 14d7b61f1e70cd1f0a6b4bd9c5ce328c https://www.encodeproject.org/files/ENCFF321FEG/@@download/ENCFF321FEG.bigWig GRCh38 released borderline replicate concordance ENCFF145WPK bigBed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF880DLB 10941179 ENCODE Processing Pipeline 2fb305d713650356403b0b0ec5ed4ed0 https://www.encodeproject.org/files/ENCFF145WPK/@@download/ENCFF145WPK.bigBed GRCh38 released borderline replicate concordance ENCFF852FJH bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF910IKB, ENCFF954HWS 6427346 ENCODE Processing Pipeline 049ddc36c11ec20e75db3a609b515621 https://www.encodeproject.org/files/ENCFF852FJH/@@download/ENCFF852FJH.bed.gz GRCh38 released borderline replicate concordance ENCFF352JXW bigBed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF728DGC 11016124 ENCODE Processing Pipeline 0ebbbcf58c943fdfe4bc4010ed22e5be https://www.encodeproject.org/files/ENCFF352JXW/@@download/ENCFF352JXW.bigBed GRCh38 released borderline replicate concordance ENCFF728DGC bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF124RUL, ENCFF227IZS 6514718 ENCODE Processing Pipeline 1899c3c43f1c1fc7c67a9fe7bab302d4 https://www.encodeproject.org/files/ENCFF728DGC/@@download/ENCFF728DGC.bed.gz GRCh38 released borderline replicate concordance ENCFF880DLB bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF124RUL, ENCFF227IZS, ENCFF910IKB, ENCFF954HWS 7152682 ENCODE Processing Pipeline bc4dc45465b4b32244095fbd4219a2bc https://www.encodeproject.org/files/ENCFF880DLB/@@download/ENCFF880DLB.bed.gz GRCh38 released borderline replicate concordance ENCFF604QCF bigBed narrowPeak conservative idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF964DVU 92435 ENCODE Processing Pipeline f8959a9fde618c4f5173360d3d44d711 https://www.encodeproject.org/files/ENCFF604QCF/@@download/ENCFF604QCF.bigBed GRCh38 released borderline replicate concordance ENCFF654OZU bigBed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF852FJH 11129244 ENCODE Processing Pipeline 3dfdf0877242d0f9c611576b03695e83 https://www.encodeproject.org/files/ENCFF654OZU/@@download/ENCFF654OZU.bigBed GRCh38 released borderline replicate concordance ENCFF964DVU bed narrowPeak conservative idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF728DGC, ENCFF852FJH, ENCFF880DLB 22607 ENCODE Processing Pipeline 0ef49881d14780b79b49be1c3596031d https://www.encodeproject.org/files/ENCFF964DVU/@@download/ENCFF964DVU.bed.gz GRCh38 released borderline replicate concordance ENCFF224UCI bigBed narrowPeak optimal idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF508WCC 163747 ENCODE Processing Pipeline 92806970a4985685f98c5a527c914c06 https://www.encodeproject.org/files/ENCFF224UCI/@@download/ENCFF224UCI.bigBed GRCh38 released borderline replicate concordance ENCFF508WCC bed narrowPeak optimal idr thresholded peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF728DGC, ENCFF852FJH, ENCFF880DLB 54121 ENCODE Processing Pipeline aab7dd8e8aff59499adaa07c77c9ba55 https://www.encodeproject.org/files/ENCFF508WCC/@@download/ENCFF508WCC.bed.gz GRCh38 released borderline replicate concordance ENCFF108YMB fastq reads ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 1 76 single-ended 1314294625 Richard Myers, HAIB 2a7525680d7e8da008ccebb5e5c26c35 https://www.encodeproject.org/files/ENCFF108YMB/@@download/ENCFF108YMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF698ISS bam unfiltered alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 76 ENCFF108YMB, ENCFF643CGH 1419953060 ENCODE Processing Pipeline 8ac61d5ba5b2bf99f55c33aa841b8b9c https://www.encodeproject.org/files/ENCFF698ISS/@@download/ENCFF698ISS.bam GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF235HDP bam unfiltered alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 76 ENCFF108YMB, ENCFF807MUK 1416472115 ENCODE Processing Pipeline 2f1ce65cb87cc911e8bf4d64ebed762f https://www.encodeproject.org/files/ENCFF235HDP/@@download/ENCFF235HDP.bam hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF792QOD bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 76 ENCFF108YMB, ENCFF643CGH 1055170822 ENCODE Processing Pipeline 878c5cc2a14b62bf72bcb47ec9fd4320 https://www.encodeproject.org/files/ENCFF792QOD/@@download/ENCFF792QOD.bam GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF059JFA bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 76 ENCFF108YMB, ENCFF807MUK 1054591804 ENCODE Processing Pipeline b71f714eedf01ab29ffac0af37d9e8bd https://www.encodeproject.org/files/ENCFF059JFA/@@download/ENCFF059JFA.bam hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF152PIA fastq reads ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 1 76 single-ended 1823983448 Richard Myers, HAIB 7234b6509f9ef2a5b3393f03c38a5f14 https://www.encodeproject.org/files/ENCFF152PIA/@@download/ENCFF152PIA.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF396ODQ bam unfiltered alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 76 ENCFF152PIA, ENCFF643CGH 2137430178 ENCODE Processing Pipeline 406b1341e3d9c3f039bca9f12b1942b4 https://www.encodeproject.org/files/ENCFF396ODQ/@@download/ENCFF396ODQ.bam GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF078ADX bam unfiltered alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 76 ENCFF152PIA, ENCFF807MUK 2131505308 ENCODE Processing Pipeline 1d76a2902ba1c18626cdd02e5ea770c6 https://www.encodeproject.org/files/ENCFF078ADX/@@download/ENCFF078ADX.bam hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF499ZUN bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 76 ENCFF152PIA, ENCFF643CGH 1443638604 ENCODE Processing Pipeline b8045b39ce3a24324116273da3bbf369 https://www.encodeproject.org/files/ENCFF499ZUN/@@download/ENCFF499ZUN.bam GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF744CYD bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 76 ENCFF152PIA, ENCFF807MUK 1442514722 ENCODE Processing Pipeline 8afdb738c2b5b0d7bca84c92fa491660 https://www.encodeproject.org/files/ENCFF744CYD/@@download/ENCFF744CYD.bam hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF187VHT bigWig signal p-value ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF059JFA 591222360 ENCODE Processing Pipeline 9dbc649ce0e830dd8f1ab0b9f7b5ca52 https://www.encodeproject.org/files/ENCFF187VHT/@@download/ENCFF187VHT.bigWig hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF210ZAB bigWig signal p-value ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF499ZUN 665207634 ENCODE Processing Pipeline dfec4f74791ce260476866458cefc2b4 https://www.encodeproject.org/files/ENCFF210ZAB/@@download/ENCFF210ZAB.bigWig GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF842PSD bigWig signal p-value ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF744CYD 653837892 ENCODE Processing Pipeline fc36dd8da98abfe23317b0cfc188d211 https://www.encodeproject.org/files/ENCFF842PSD/@@download/ENCFF842PSD.bigWig hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF846QDB bigWig signal p-value ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF059JFA, ENCFF744CYD 623370174 ENCODE Processing Pipeline 51181e200ae1ecb2b9580dbf3bc176c0 https://www.encodeproject.org/files/ENCFF846QDB/@@download/ENCFF846QDB.bigWig hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF592UJR bigWig fold change over control ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF499ZUN 529689193 ENCODE Processing Pipeline 9a30e083e75261d5428e96a4ae3bfe7b https://www.encodeproject.org/files/ENCFF592UJR/@@download/ENCFF592UJR.bigWig GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF572AIP bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF059JFA 5559904 ENCODE Processing Pipeline eb2c365d09e97046411666f07a261821 https://www.encodeproject.org/files/ENCFF572AIP/@@download/ENCFF572AIP.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF195MZT bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF059JFA, ENCFF744CYD 6789950 ENCODE Processing Pipeline 99d2db88eada7b6e8b0f76980d33c652 https://www.encodeproject.org/files/ENCFF195MZT/@@download/ENCFF195MZT.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF181STY bigWig fold change over control ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF059JFA 404261246 ENCODE Processing Pipeline 213427253dea107f9370f71c4936c715 https://www.encodeproject.org/files/ENCFF181STY/@@download/ENCFF181STY.bigWig hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF770TYO bigWig fold change over control ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF792QOD 407997902 ENCODE Processing Pipeline e0a8b927734f8cbf631e22304baaacf2 https://www.encodeproject.org/files/ENCFF770TYO/@@download/ENCFF770TYO.bigWig GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF513UXW bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF744CYD 6510293 ENCODE Processing Pipeline 1bf9fc4fab792704af33996a42bed991 https://www.encodeproject.org/files/ENCFF513UXW/@@download/ENCFF513UXW.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF161DSU bigBed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF572AIP 13178178 ENCODE Processing Pipeline d33a295c0f106bc188a451df061a662d https://www.encodeproject.org/files/ENCFF161DSU/@@download/ENCFF161DSU.bigBed hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF499QQM bigWig signal p-value ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF499ZUN, ENCFF792QOD 652139674 ENCODE Processing Pipeline e87e2551f465b5c212d4ad0ee434bebc https://www.encodeproject.org/files/ENCFF499QQM/@@download/ENCFF499QQM.bigWig GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF601SRY bigWig signal p-value ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF792QOD 434643550 ENCODE Processing Pipeline 702c82f8b77d10a0456eef28daca5fb0 https://www.encodeproject.org/files/ENCFF601SRY/@@download/ENCFF601SRY.bigWig GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF123GUG bigWig fold change over control ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF744CYD 531570009 ENCODE Processing Pipeline faabba6e4319e20a71898168a8bb8017 https://www.encodeproject.org/files/ENCFF123GUG/@@download/ENCFF123GUG.bigWig hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF387ROQ bigWig fold change over control ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF059JFA, ENCFF744CYD 781694495 ENCODE Processing Pipeline aa340f9044c53a369da693c022bc5b46 https://www.encodeproject.org/files/ENCFF387ROQ/@@download/ENCFF387ROQ.bigWig hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF680PDI bigBed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF513UXW 12883627 ENCODE Processing Pipeline ec8bf12b1a5c87a8a18c26d5ede86392 https://www.encodeproject.org/files/ENCFF680PDI/@@download/ENCFF680PDI.bigBed hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF287FCI bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF792QOD 5506860 ENCODE Processing Pipeline 2deb2d03d883e62a1282cfca01f9c41c https://www.encodeproject.org/files/ENCFF287FCI/@@download/ENCFF287FCI.bed.gz GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF786XVC bigBed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF559VLF 12917030 ENCODE Processing Pipeline 8a129650538ebdb1c96874dd4353e700 https://www.encodeproject.org/files/ENCFF786XVC/@@download/ENCFF786XVC.bigBed GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF049VMN bed narrowPeak conservative idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF001TDO, ENCFF195MZT, ENCFF513UXW, ENCFF572AIP 272073 ENCODE Processing Pipeline 21367a97b738d9c57ff89ee6bf6046b6 https://www.encodeproject.org/files/ENCFF049VMN/@@download/ENCFF049VMN.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF030VHC bigBed narrowPeak conservative idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF049VMN 561799 ENCODE Processing Pipeline c91111c59efe93db80ebf9244b887e99 https://www.encodeproject.org/files/ENCFF030VHC/@@download/ENCFF030VHC.bigBed hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF339KEQ bigBed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF195MZT 12944476 ENCODE Processing Pipeline 6daf20bce273f5037a1600bf7200937b https://www.encodeproject.org/files/ENCFF339KEQ/@@download/ENCFF339KEQ.bigBed hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF032IAM bigWig fold change over control ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF499ZUN, ENCFF792QOD 802216148 ENCODE Processing Pipeline f6c488294c316a1f290eb6357b0f0369 https://www.encodeproject.org/files/ENCFF032IAM/@@download/ENCFF032IAM.bigWig GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF615ZNL bed narrowPeak optimal idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF001TDO, ENCFF195MZT, ENCFF513UXW, ENCFF572AIP 327557 ENCODE Processing Pipeline 7c9167548b299e6255d6eedabd649457 https://www.encodeproject.org/files/ENCFF615ZNL/@@download/ENCFF615ZNL.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF758YUU bigBed narrowPeak optimal idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF615ZNL 651140 ENCODE Processing Pipeline 1ed40c87ad46e7dc9bcae510f9e5cbfe https://www.encodeproject.org/files/ENCFF758YUU/@@download/ENCFF758YUU.bigBed hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF559VLF bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF499ZUN 6469374 ENCODE Processing Pipeline e9f88f88d8c3fbe239cc0ad0be041d54 https://www.encodeproject.org/files/ENCFF559VLF/@@download/ENCFF559VLF.bed.gz GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF449BAR bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF499ZUN, ENCFF792QOD 6735693 ENCODE Processing Pipeline 287d583bd2b3479d923a03f1d6898de0 https://www.encodeproject.org/files/ENCFF449BAR/@@download/ENCFF449BAR.bed.gz GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF521KFY bigBed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF287FCI 13129855 ENCODE Processing Pipeline a1c3d3d142157076eaf26a1c12a4fb3f https://www.encodeproject.org/files/ENCFF521KFY/@@download/ENCFF521KFY.bigBed GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF376AQU bed narrowPeak conservative idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF287FCI, ENCFF419RSJ, ENCFF449BAR, ENCFF559VLF 279914 ENCODE Processing Pipeline 57425c0335e5680aeba49209cb384237 https://www.encodeproject.org/files/ENCFF376AQU/@@download/ENCFF376AQU.bed.gz GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF791DYN bigBed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF449BAR 12961630 ENCODE Processing Pipeline 3af200e8390018e550238d4100cc7501 https://www.encodeproject.org/files/ENCFF791DYN/@@download/ENCFF791DYN.bigBed GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF729ZHC bed narrowPeak optimal idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF287FCI, ENCFF419RSJ, ENCFF449BAR, ENCFF559VLF 333023 ENCODE Processing Pipeline beec89faa5a06694b050298d1ba8b6ba https://www.encodeproject.org/files/ENCFF729ZHC/@@download/ENCFF729ZHC.bed.gz GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF324JDH bigBed narrowPeak optimal idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF729ZHC 664011 ENCODE Processing Pipeline d007186ff2228cf04a80c7573802627d https://www.encodeproject.org/files/ENCFF324JDH/@@download/ENCFF324JDH.bigBed GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF305MWI bigBed narrowPeak conservative idr thresholded peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1, 2 ENCFF376AQU 576985 ENCODE Processing Pipeline 8e9d4bf3755e2971ec8856cc5be15811 https://www.encodeproject.org/files/ENCFF305MWI/@@download/ENCFF305MWI.bigBed GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF015MWE fastq reads ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF405OKO 3950125709 Michael Snyder, Stanford 5ded8321e9a104b5ffaa030fb0ea122c SRA:SRR6213146 https://www.encodeproject.org/files/ENCFF015MWE/@@download/ENCFF015MWE.fastq.gz Illumina HiSeq 4000 /files/ENCFF646DHK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF405OKO fastq reads ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF015MWE 4364625724 Michael Snyder, Stanford ba5d4161fe8112fa20b11f195057b1bf SRA:SRR6213146 https://www.encodeproject.org/files/ENCFF405OKO/@@download/ENCFF405OKO.fastq.gz Illumina HiSeq 4000 /files/ENCFF973DKC/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF590NPY bam unfiltered alignments ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF015MWE, ENCFF405OKO, ENCFF807MUK 7843036010 ENCODE Processing Pipeline 8661f2803a0726644cff32f72e6f1cda https://www.encodeproject.org/files/ENCFF590NPY/@@download/ENCFF590NPY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF337DWJ bam unfiltered alignments ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF015MWE, ENCFF405OKO, ENCFF643CGH 7848351578 ENCODE Processing Pipeline eb2b233677a1f584f4d7a55a03003587 https://www.encodeproject.org/files/ENCFF337DWJ/@@download/ENCFF337DWJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF065WHF bam alignments ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF015MWE, ENCFF405OKO, ENCFF643CGH 4226723898 ENCODE Processing Pipeline 903dbe98a97522c28db93f9f53d70c04 https://www.encodeproject.org/files/ENCFF065WHF/@@download/ENCFF065WHF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF675QNF bam alignments ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF015MWE, ENCFF405OKO, ENCFF807MUK 4219460773 ENCODE Processing Pipeline 21fec94626d5f1c62e05189a72d34cc4 https://www.encodeproject.org/files/ENCFF675QNF/@@download/ENCFF675QNF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF923FDZ bigWig signal p-value ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF106RXX, ENCFF675QNF 1203575427 ENCODE Processing Pipeline d736c14c8a49043b0ed2269cc036b209 https://www.encodeproject.org/files/ENCFF923FDZ/@@download/ENCFF923FDZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF614PZE bigWig fold change over control ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF106RXX, ENCFF675QNF 1535285819 ENCODE Processing Pipeline 7dcbd9c3de00c083ff466a463408483b https://www.encodeproject.org/files/ENCFF614PZE/@@download/ENCFF614PZE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF401PJP bed narrowPeak peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF106RXX, ENCFF675QNF 6200808 ENCODE Processing Pipeline 98020311042e062215178682bf295447 https://www.encodeproject.org/files/ENCFF401PJP/@@download/ENCFF401PJP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF937QDI bigBed narrowPeak peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF401PJP 11350708 ENCODE Processing Pipeline d0983ad6aa5e43df158c127952f0bee9 https://www.encodeproject.org/files/ENCFF937QDI/@@download/ENCFF937QDI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF207KQM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF401PJP 86667 ENCODE Processing Pipeline 10de0114447fb8371a529ea46a17ab7b https://www.encodeproject.org/files/ENCFF207KQM/@@download/ENCFF207KQM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF021WUN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF207KQM 225808 ENCODE Processing Pipeline 56fb85ccc02d691ec6549db346b325c3 https://www.encodeproject.org/files/ENCFF021WUN/@@download/ENCFF021WUN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF267EBA bigWig signal p-value ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF065WHF, ENCFF278DTC 1492457536 ENCODE Processing Pipeline 1700c591ace936b8ca08edfded1ef8a2 https://www.encodeproject.org/files/ENCFF267EBA/@@download/ENCFF267EBA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF173JJJ bed narrowPeak peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF065WHF, ENCFF278DTC 6207693 ENCODE Processing Pipeline 054bb53c0cfa0d80f427b2cd7bf2ed25 https://www.encodeproject.org/files/ENCFF173JJJ/@@download/ENCFF173JJJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF182ETN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF173JJJ, ENCFF419RSJ 84884 ENCODE Processing Pipeline edcc0337b05b3d71ae59be823e00983e https://www.encodeproject.org/files/ENCFF182ETN/@@download/ENCFF182ETN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF427ROZ bigBed narrowPeak peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF173JJJ 11373871 ENCODE Processing Pipeline a7f0373548d4b7ecbbdd67210bfbcc52 https://www.encodeproject.org/files/ENCFF427ROZ/@@download/ENCFF427ROZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF370NFH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF182ETN 225418 ENCODE Processing Pipeline d0c326b8724c4ab5699628847cc140d7 https://www.encodeproject.org/files/ENCFF370NFH/@@download/ENCFF370NFH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF624FIC bigWig fold change over control ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF065WHF, ENCFF278DTC 1535346600 ENCODE Processing Pipeline 4bba4f83b09165d4e060f657b6b94902 https://www.encodeproject.org/files/ENCFF624FIC/@@download/ENCFF624FIC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF104LKB fastq reads ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF079WWC 3731681946 Michael Snyder, Stanford c735ae7bbd5e2da4e34e947c1e646257 SRA:SRR6213267 https://www.encodeproject.org/files/ENCFF104LKB/@@download/ENCFF104LKB.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF076DJF fastq reads ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF578AVN 2454979006 Michael Snyder, Stanford 7b396615f9846363b7ed6953859fd34d SRA:SRR6213268 https://www.encodeproject.org/files/ENCFF076DJF/@@download/ENCFF076DJF.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF079WWC fastq reads ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF104LKB 3019283725 Michael Snyder, Stanford 321810c4ee22b675712479345d7fe41c SRA:SRR6213267 https://www.encodeproject.org/files/ENCFF079WWC/@@download/ENCFF079WWC.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF578AVN fastq reads ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF076DJF 2784470779 Michael Snyder, Stanford 5ee65e9a740de98cae4f6f1d40d6122c SRA:SRR6213268 https://www.encodeproject.org/files/ENCFF578AVN/@@download/ENCFF578AVN.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF793HDZ bam unfiltered alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF079WWC, ENCFF104LKB, ENCFF643CGH 6676661658 ENCODE Processing Pipeline a8ae24f607ea35450321764f226b4ab5 https://www.encodeproject.org/files/ENCFF793HDZ/@@download/ENCFF793HDZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF371VUE bam unfiltered alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF076DJF, ENCFF578AVN, ENCFF807MUK 5319274239 ENCODE Processing Pipeline ff9185b8d2b7314b7c94d83e2678d2cf https://www.encodeproject.org/files/ENCFF371VUE/@@download/ENCFF371VUE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF916XVB bam unfiltered alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF079WWC, ENCFF104LKB, ENCFF807MUK 6663863415 ENCODE Processing Pipeline 0cc759917a8285b57820714d0943e7c7 https://www.encodeproject.org/files/ENCFF916XVB/@@download/ENCFF916XVB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF447DQM bam unfiltered alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF076DJF, ENCFF578AVN, ENCFF643CGH 5329570224 ENCODE Processing Pipeline ded14601991e7c5a40b5d5fcc6ef8386 https://www.encodeproject.org/files/ENCFF447DQM/@@download/ENCFF447DQM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF458MXN bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF076DJF, ENCFF578AVN, ENCFF807MUK 4303299973 ENCODE Processing Pipeline fdf42718d396a59e642b84b3d4c39a9c https://www.encodeproject.org/files/ENCFF458MXN/@@download/ENCFF458MXN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF584CLK bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF079WWC, ENCFF104LKB, ENCFF807MUK 5274959951 ENCODE Processing Pipeline 897684cb6b6ce36dbc5ff0c4fe1fcaaf https://www.encodeproject.org/files/ENCFF584CLK/@@download/ENCFF584CLK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF136ZLW bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF076DJF, ENCFF578AVN, ENCFF643CGH 4306718847 ENCODE Processing Pipeline e0c8e8c4e25d6bb189176ce9b84a5e19 https://www.encodeproject.org/files/ENCFF136ZLW/@@download/ENCFF136ZLW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF503ISP bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF079WWC, ENCFF104LKB, ENCFF643CGH 5280185719 ENCODE Processing Pipeline 690b25d49b4f8824fc93a6a4fdf38b66 https://www.encodeproject.org/files/ENCFF503ISP/@@download/ENCFF503ISP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF996QJP bigWig signal p-value ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF458MXN 1521387884 ENCODE Processing Pipeline d84125880e2cdf84515f4db12db1ad26 https://www.encodeproject.org/files/ENCFF996QJP/@@download/ENCFF996QJP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF351IFH bigWig signal p-value ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF584CLK 1547670110 ENCODE Processing Pipeline a003490d6eefc69a12d2246cd87cd029 https://www.encodeproject.org/files/ENCFF351IFH/@@download/ENCFF351IFH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF438EDV bigWig signal p-value ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF136ZLW, ENCFF810LLR 1650799628 ENCODE Processing Pipeline c34517d1cc5ea21a3ba6cec25e026bb2 https://www.encodeproject.org/files/ENCFF438EDV/@@download/ENCFF438EDV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF163QNH bigWig signal p-value ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF136ZLW, ENCFF503ISP, ENCFF810LLR 1923899279 ENCODE Processing Pipeline 8795aad8643b9b6f9e3b5b6043ab6d70 https://www.encodeproject.org/files/ENCFF163QNH/@@download/ENCFF163QNH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF123UXD bigWig signal p-value ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF503ISP, ENCFF810LLR 1683725338 ENCODE Processing Pipeline 6cb67599d67da7bd5b8fd90fd7f12f20 https://www.encodeproject.org/files/ENCFF123UXD/@@download/ENCFF123UXD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF509TVW bigWig signal p-value ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF458MXN, ENCFF584CLK 1959410559 ENCODE Processing Pipeline 19e5cc2069025be4fa1df96168484543 https://www.encodeproject.org/files/ENCFF509TVW/@@download/ENCFF509TVW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF267AXX bigWig fold change over control ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF458MXN 1548014893 ENCODE Processing Pipeline f8f8bd0cf6c2ad29a6dce1f3c28a3e75 https://www.encodeproject.org/files/ENCFF267AXX/@@download/ENCFF267AXX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF929CJA bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF136ZLW, ENCFF503ISP, ENCFF810LLR 7299266 ENCODE Processing Pipeline dbef732719e7c21099be8cda9ce62ee5 https://www.encodeproject.org/files/ENCFF929CJA/@@download/ENCFF929CJA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF571IUY bigWig fold change over control ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF503ISP, ENCFF810LLR 1787426454 ENCODE Processing Pipeline 9def0b31f69bde1fe4c3bc45a82ea8cd https://www.encodeproject.org/files/ENCFF571IUY/@@download/ENCFF571IUY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF492TGZ bigWig fold change over control ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF136ZLW, ENCFF810LLR 1553761543 ENCODE Processing Pipeline cae393edbcb323645b87d7df47357f92 https://www.encodeproject.org/files/ENCFF492TGZ/@@download/ENCFF492TGZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF748KBY bigWig fold change over control ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF136ZLW, ENCFF503ISP, ENCFF810LLR 2242311493 ENCODE Processing Pipeline 06ff56f9da4def9694248f25bfef8736 https://www.encodeproject.org/files/ENCFF748KBY/@@download/ENCFF748KBY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF808DHS bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF503ISP, ENCFF810LLR 6815862 ENCODE Processing Pipeline f17edfae565008c9252961bb95d99f33 https://www.encodeproject.org/files/ENCFF808DHS/@@download/ENCFF808DHS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF042SWE bigWig fold change over control ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF458MXN, ENCFF584CLK 2282470974 ENCODE Processing Pipeline 39abfe11368c34576a8d4df598c1a337 https://www.encodeproject.org/files/ENCFF042SWE/@@download/ENCFF042SWE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF480PIW bigBed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF808DHS 11017489 ENCODE Processing Pipeline 66767bf2e298b7bb93ec4f7d7b25d20c https://www.encodeproject.org/files/ENCFF480PIW/@@download/ENCFF480PIW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF505GHK bed narrowPeak conservative idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF044BAW, ENCFF419RSJ, ENCFF808DHS, ENCFF929CJA 34975 ENCODE Processing Pipeline 86cb66e5afab785a1b98973e1e64ca25 https://www.encodeproject.org/files/ENCFF505GHK/@@download/ENCFF505GHK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF321XZG bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF584CLK 6808997 ENCODE Processing Pipeline bb8b58d37a66cc6df420e4ad5abead38 https://www.encodeproject.org/files/ENCFF321XZG/@@download/ENCFF321XZG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF762ACB bigWig fold change over control ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF584CLK 1784009471 ENCODE Processing Pipeline d36cb5b6aa6a26a14380b242030a82bd https://www.encodeproject.org/files/ENCFF762ACB/@@download/ENCFF762ACB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF484OPK bigBed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF044BAW 11140493 ENCODE Processing Pipeline 1a2279ad810b00fb96009cde490d4259 https://www.encodeproject.org/files/ENCFF484OPK/@@download/ENCFF484OPK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF044BAW bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF136ZLW, ENCFF810LLR 6610980 ENCODE Processing Pipeline 649eeda759f7a54d66ffa095d59b6e8f https://www.encodeproject.org/files/ENCFF044BAW/@@download/ENCFF044BAW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF781TTQ bigBed narrowPeak conservative idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF505GHK 111285 ENCODE Processing Pipeline 9c9806426ff86e75a9a78b16b52bb7ee https://www.encodeproject.org/files/ENCFF781TTQ/@@download/ENCFF781TTQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF999NWH bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF458MXN 6606107 ENCODE Processing Pipeline 69e6b5849fe673d6d3e23431ea18e289 https://www.encodeproject.org/files/ENCFF999NWH/@@download/ENCFF999NWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF884GYB bigBed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF089TLZ 11107185 ENCODE Processing Pipeline 5791efb6eea446171b34ce607843a75e https://www.encodeproject.org/files/ENCFF884GYB/@@download/ENCFF884GYB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF481ENR bigBed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF929CJA 11111971 ENCODE Processing Pipeline e683b642e542439f9de9eb74815e0550 https://www.encodeproject.org/files/ENCFF481ENR/@@download/ENCFF481ENR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF982VOB bed narrowPeak optimal idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF044BAW, ENCFF419RSJ, ENCFF808DHS, ENCFF929CJA 50641 ENCODE Processing Pipeline 3cc343b9a3547b08289188bd67fc942e https://www.encodeproject.org/files/ENCFF982VOB/@@download/ENCFF982VOB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF552OND bigBed narrowPeak optimal idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF982VOB 133711 ENCODE Processing Pipeline 76ab3f3bd4f695236bb1d26888eb4762 https://www.encodeproject.org/files/ENCFF552OND/@@download/ENCFF552OND.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF226MLA bed narrowPeak conservative idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF089TLZ, ENCFF321XZG, ENCFF999NWH 32700 ENCODE Processing Pipeline ff3de9714ee3f21c0506027f06a265c5 https://www.encodeproject.org/files/ENCFF226MLA/@@download/ENCFF226MLA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF558QMJ bed narrowPeak optimal idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF089TLZ, ENCFF321XZG, ENCFF999NWH 47041 ENCODE Processing Pipeline f417a8ca2419c1b64966cf99c0c7f9ae https://www.encodeproject.org/files/ENCFF558QMJ/@@download/ENCFF558QMJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF620QZK bigBed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF999NWH 11122359 ENCODE Processing Pipeline bec249ba1ba98f1b96b2a7a74497c4ca https://www.encodeproject.org/files/ENCFF620QZK/@@download/ENCFF620QZK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF615DSL bigBed narrowPeak optimal idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF558QMJ 126663 ENCODE Processing Pipeline 447a0268468c5b29e1c434a8b00507ba https://www.encodeproject.org/files/ENCFF615DSL/@@download/ENCFF615DSL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF089TLZ bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF458MXN, ENCFF584CLK 7287497 ENCODE Processing Pipeline ca978ccaa44798575118ba8f61445311 https://www.encodeproject.org/files/ENCFF089TLZ/@@download/ENCFF089TLZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF521LVI bigBed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF321XZG 10998186 ENCODE Processing Pipeline 46e3210b75af2efc4fd892bcb1ca19e3 https://www.encodeproject.org/files/ENCFF521LVI/@@download/ENCFF521LVI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF864HXH bigBed narrowPeak conservative idr thresholded peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF226MLA 106165 ENCODE Processing Pipeline 74dba6f54f8cc9a51408276144541b5c https://www.encodeproject.org/files/ENCFF864HXH/@@download/ENCFF864HXH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF512WRL bam unfiltered alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 50 ENCFF751GLM, ENCFF801EQE, ENCFF807MUK 1130583126 ENCODE Processing Pipeline 810f212a6fc43925d4bb82eedf2be19b https://www.encodeproject.org/files/ENCFF512WRL/@@download/ENCFF512WRL.bam hg19 released low read depth, missing genetic modification characterization ENCFF079ING bam unfiltered alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 50 ENCFF157QEO, ENCFF201XOJ, ENCFF807MUK 1250218921 ENCODE Processing Pipeline 6d9c8a2a89f11761541a1d2c2ec3735a https://www.encodeproject.org/files/ENCFF079ING/@@download/ENCFF079ING.bam hg19 released low read depth, missing genetic modification characterization ENCFF751GLM fastq reads ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 479779508 Kevin White, UChicago 3d6387b73d110f1c3a8da91109fb962e SRA:SRR6214119 https://www.encodeproject.org/files/ENCFF751GLM/@@download/ENCFF751GLM.fastq.gz Illumina HiSeq 2500 /files/ENCFF184BAC/, /files/ENCFF387LKO/ released low read depth, missing genetic modification characterization ENCFF201XOJ fastq reads ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 460343489 Kevin White, UChicago 358def595a2952fcb09788c077532bf9 SRA:SRR6214121 https://www.encodeproject.org/files/ENCFF201XOJ/@@download/ENCFF201XOJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF184BAC/, /files/ENCFF387LKO/ released low read depth, missing genetic modification characterization ENCFF801EQE fastq reads ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 568216535 Kevin White, UChicago 9d075b681035a9e7c6bd33473a8fa7a1 SRA:SRR6214120 https://www.encodeproject.org/files/ENCFF801EQE/@@download/ENCFF801EQE.fastq.gz Illumina HiSeq 2500 /files/ENCFF184BAC/, /files/ENCFF387LKO/ released low read depth, missing genetic modification characterization ENCFF157QEO fastq reads ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 743376194 Kevin White, UChicago 2a211682ceb8a82f9495377c5e1da5c5 SRA:SRR6214122 https://www.encodeproject.org/files/ENCFF157QEO/@@download/ENCFF157QEO.fastq.gz Illumina HiSeq 2500 /files/ENCFF184BAC/, /files/ENCFF387LKO/ released low read depth, missing genetic modification characterization ENCFF117CKT bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 50 ENCFF751GLM, ENCFF801EQE, ENCFF807MUK 866627645 ENCODE Processing Pipeline a553c521f6df6842113fdd94f9535795 https://www.encodeproject.org/files/ENCFF117CKT/@@download/ENCFF117CKT.bam hg19 released low read depth, missing genetic modification characterization ENCFF916QKW bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 50 ENCFF157QEO, ENCFF201XOJ, ENCFF807MUK 850188064 ENCODE Processing Pipeline dcdd793a9047dc70f124e185a5bceada https://www.encodeproject.org/files/ENCFF916QKW/@@download/ENCFF916QKW.bam hg19 released low read depth, missing genetic modification characterization ENCFF591TYU bigWig signal p-value ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF117CKT, ENCFF574IJZ 522995881 ENCODE Processing Pipeline 99dbe5cfe14df08541f9118d7b3c79a5 https://www.encodeproject.org/files/ENCFF591TYU/@@download/ENCFF591TYU.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF885CRC bigWig fold change over control ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF117CKT, ENCFF574IJZ 490590959 ENCODE Processing Pipeline 09efb11da278026499015cd57ca5eeac https://www.encodeproject.org/files/ENCFF885CRC/@@download/ENCFF885CRC.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF321QVJ bigWig signal p-value ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF574IJZ, ENCFF916QKW 506560976 ENCODE Processing Pipeline ce95993ba4530e602df603e4de6cdbc3 https://www.encodeproject.org/files/ENCFF321QVJ/@@download/ENCFF321QVJ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF879KFV bigWig fold change over control ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF574IJZ, ENCFF916QKW 471114668 ENCODE Processing Pipeline d6773154c2d991521219f08b0847fece https://www.encodeproject.org/files/ENCFF879KFV/@@download/ENCFF879KFV.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF312PLO bigWig fold change over control ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF117CKT, ENCFF574IJZ, ENCFF916QKW 737984779 ENCODE Processing Pipeline 9c4f59b82e1050fd45b9c6fa03dc3478 https://www.encodeproject.org/files/ENCFF312PLO/@@download/ENCFF312PLO.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF117FVM bigWig signal p-value ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF117CKT, ENCFF574IJZ, ENCFF916QKW 594836165 ENCODE Processing Pipeline 2dec60e28c9249aa4356175df0cff9bc https://www.encodeproject.org/files/ENCFF117FVM/@@download/ENCFF117FVM.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF543QKR bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF117CKT, ENCFF574IJZ, ENCFF916QKW 7033796 ENCODE Processing Pipeline 99caf292082895bdef0a2b5f5c39929e https://www.encodeproject.org/files/ENCFF543QKR/@@download/ENCFF543QKR.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF816KBT bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF574IJZ, ENCFF916QKW 6588877 ENCODE Processing Pipeline 5abbf5c5eef77f27ff04b1ba5489df94 https://www.encodeproject.org/files/ENCFF816KBT/@@download/ENCFF816KBT.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF433SFB bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF117CKT, ENCFF574IJZ 6612953 ENCODE Processing Pipeline e560efe96923141e1f2da95dfb04ab90 https://www.encodeproject.org/files/ENCFF433SFB/@@download/ENCFF433SFB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF803KYG bigBed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF816KBT 12684832 ENCODE Processing Pipeline 0fc6e2d3af9be32d9b4fcf100e5948f6 https://www.encodeproject.org/files/ENCFF803KYG/@@download/ENCFF803KYG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF841JFB bigBed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF433SFB 12801727 ENCODE Processing Pipeline 6ded3ab91e7022e0f7e2143d1ef6b1c8 https://www.encodeproject.org/files/ENCFF841JFB/@@download/ENCFF841JFB.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF420IFP bigBed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF543QKR 12691225 ENCODE Processing Pipeline 7d9da08d84203ebc99af3ecca1b2b8ee https://www.encodeproject.org/files/ENCFF420IFP/@@download/ENCFF420IFP.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF678YUE bam unfiltered alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 50 ENCFF157QEO, ENCFF201XOJ, ENCFF643CGH 1253681323 ENCODE Processing Pipeline 0b6718f158237bcccafbe2a08e36c99d https://www.encodeproject.org/files/ENCFF678YUE/@@download/ENCFF678YUE.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF960OSJ bam unfiltered alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF751GLM, ENCFF801EQE 1134368728 ENCODE Processing Pipeline a9c6c3f49973b2cdb84f53e336b00577 https://www.encodeproject.org/files/ENCFF960OSJ/@@download/ENCFF960OSJ.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF433SUG bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 50 ENCFF157QEO, ENCFF201XOJ, ENCFF643CGH 849591098 ENCODE Processing Pipeline b6308a65d39629b6d698e4d8b0cb8023 https://www.encodeproject.org/files/ENCFF433SUG/@@download/ENCFF433SUG.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF461OAN bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF751GLM, ENCFF801EQE 866050158 ENCODE Processing Pipeline ef8b3b8c670a0123d610e3d0482899fb https://www.encodeproject.org/files/ENCFF461OAN/@@download/ENCFF461OAN.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF511QUG bigWig signal p-value ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF461OAN, ENCFF635ZZS 463510201 ENCODE Processing Pipeline c74708b9cdf5f931952c4b01ae7fce48 https://www.encodeproject.org/files/ENCFF511QUG/@@download/ENCFF511QUG.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF600ZUS bigWig signal p-value ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF433SUG, ENCFF461OAN, ENCFF635ZZS 603876437 ENCODE Processing Pipeline bd7b7c7d8390df88051515b66d1de81e https://www.encodeproject.org/files/ENCFF600ZUS/@@download/ENCFF600ZUS.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF279ZMK bigWig fold change over control ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF461OAN, ENCFF635ZZS 483029975 ENCODE Processing Pipeline ba08827886fca972117a49f76f516fe4 https://www.encodeproject.org/files/ENCFF279ZMK/@@download/ENCFF279ZMK.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF913XNH bigWig fold change over control ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF433SUG, ENCFF635ZZS 479915505 ENCODE Processing Pipeline 842830d9a24c7d9a9525d4cf37aa142a https://www.encodeproject.org/files/ENCFF913XNH/@@download/ENCFF913XNH.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF976NAQ bigWig signal p-value ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF433SUG, ENCFF635ZZS 559991152 ENCODE Processing Pipeline 015710e694e3c05b9a1f63e8dc61aaf3 https://www.encodeproject.org/files/ENCFF976NAQ/@@download/ENCFF976NAQ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF558HNI bigBed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF987CKN 12795486 ENCODE Processing Pipeline e279047d73a1b4bf500f641751679a78 https://www.encodeproject.org/files/ENCFF558HNI/@@download/ENCFF558HNI.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF826JXZ bigWig fold change over control ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF433SUG, ENCFF461OAN, ENCFF635ZZS 744021126 ENCODE Processing Pipeline 243d1a66ed7c80248e3780810d339798 https://www.encodeproject.org/files/ENCFF826JXZ/@@download/ENCFF826JXZ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF987CKN bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF461OAN, ENCFF635ZZS 6449753 ENCODE Processing Pipeline 7cdc4cd2bdbdc12c8edf52ed0d865d4d https://www.encodeproject.org/files/ENCFF987CKN/@@download/ENCFF987CKN.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF624SBC bigBed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF630YZV 12677948 ENCODE Processing Pipeline f31806c5b280cc520a20efaac755b53f https://www.encodeproject.org/files/ENCFF624SBC/@@download/ENCFF624SBC.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF630YZV bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF433SUG, ENCFF635ZZS 6430063 ENCODE Processing Pipeline 02466b5249a235587d20108f4cb90baf https://www.encodeproject.org/files/ENCFF630YZV/@@download/ENCFF630YZV.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF668REA bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF433SUG, ENCFF461OAN, ENCFF635ZZS 6922323 ENCODE Processing Pipeline da87d4c92e2680035f2b40a7a5342b4c https://www.encodeproject.org/files/ENCFF668REA/@@download/ENCFF668REA.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF255NHB bigBed narrowPeak conservative idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF599CTG 1002421 ENCODE Processing Pipeline 537ecc6ba00cdf6b4038abd4f6c64b08 https://www.encodeproject.org/files/ENCFF255NHB/@@download/ENCFF255NHB.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF690UTT bigBed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF668REA 12697212 ENCODE Processing Pipeline de20bd4e5631423cc7e5b78d531dbbf5 https://www.encodeproject.org/files/ENCFF690UTT/@@download/ENCFF690UTT.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF017JQJ bed narrowPeak optimal idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF630YZV, ENCFF668REA, ENCFF987CKN 482944 ENCODE Processing Pipeline 339764e3ef4038fa00edf4831cfadacd https://www.encodeproject.org/files/ENCFF017JQJ/@@download/ENCFF017JQJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF599CTG bed narrowPeak conservative idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF630YZV, ENCFF668REA, ENCFF987CKN 466743 ENCODE Processing Pipeline 47922ef1344467b10f3895574c190815 https://www.encodeproject.org/files/ENCFF599CTG/@@download/ENCFF599CTG.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF060CZD bigBed narrowPeak optimal idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF017JQJ 1025722 ENCODE Processing Pipeline b0cacb8a6536d032d58c53c7c62a47ae https://www.encodeproject.org/files/ENCFF060CZD/@@download/ENCFF060CZD.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF875GNJ bigBed narrowPeak conservative idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF644EZR 734835 ENCODE Processing Pipeline 22da0993404051e8c7daa5436126499b https://www.encodeproject.org/files/ENCFF875GNJ/@@download/ENCFF875GNJ.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF644EZR bed narrowPeak conservative idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF433SFB, ENCFF543QKR, ENCFF816KBT 401666 ENCODE Processing Pipeline 0cf0e7db73fecb4e539bd97225721dbc https://www.encodeproject.org/files/ENCFF644EZR/@@download/ENCFF644EZR.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF120WOF bed narrowPeak optimal idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF433SFB, ENCFF543QKR, ENCFF816KBT 407319 ENCODE Processing Pipeline ad9c782b246e9bfbb2a00cdbb89a7885 https://www.encodeproject.org/files/ENCFF120WOF/@@download/ENCFF120WOF.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF124KQG bigBed narrowPeak optimal idr thresholded peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF120WOF 742663 ENCODE Processing Pipeline 4a2a2e375d0c9d4e6d845622200e10e5 https://www.encodeproject.org/files/ENCFF124KQG/@@download/ENCFF124KQG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF246FAV fastq reads ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 517346057 Xiang-Dong Fu, UCSD 100afcf3d421f5cd6a1bc999a400bdaa SRA:SRR6213701 https://www.encodeproject.org/files/ENCFF246FAV/@@download/ENCFF246FAV.fastq.gz Illumina HiSeq 2000 /files/ENCFF025UQF/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF266IUJ fastq reads ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 621641335 Xiang-Dong Fu, UCSD ea1124efdd805cd279de2c824f516ff4 SRA:SRR6213702 https://www.encodeproject.org/files/ENCFF266IUJ/@@download/ENCFF266IUJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF878LXV bam unfiltered alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF246FAV, ENCFF807MUK 679291737 ENCODE Processing Pipeline fa3f64c15698b5f6fb7d1905e737e982 https://www.encodeproject.org/files/ENCFF878LXV/@@download/ENCFF878LXV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF277QYK bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF246FAV, ENCFF807MUK 421515628 ENCODE Processing Pipeline 2d00a30af1bca9c52273b4610259bc13 https://www.encodeproject.org/files/ENCFF277QYK/@@download/ENCFF277QYK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF763SGF bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF266IUJ, ENCFF807MUK 520264004 ENCODE Processing Pipeline 014216ca4309426a0d6448c5adbb224a https://www.encodeproject.org/files/ENCFF763SGF/@@download/ENCFF763SGF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF762SBP bam unfiltered alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF246FAV, ENCFF643CGH 681643423 ENCODE Processing Pipeline 9e8d5cfd350881fb083b9ec2e00a88c6 https://www.encodeproject.org/files/ENCFF762SBP/@@download/ENCFF762SBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF618RVW bam unfiltered alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF266IUJ, ENCFF807MUK 819892932 ENCODE Processing Pipeline 0f4cae0a1e7899195110c82dfdcffdbc https://www.encodeproject.org/files/ENCFF618RVW/@@download/ENCFF618RVW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF762TAN bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF246FAV, ENCFF643CGH 421170978 ENCODE Processing Pipeline 2a3f506ec2f6213f91ec749ae90a45ed https://www.encodeproject.org/files/ENCFF762TAN/@@download/ENCFF762TAN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF401PIJ bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF266IUJ, ENCFF643CGH 519868699 ENCODE Processing Pipeline 509147df2e84fb66060def73d9d96afe https://www.encodeproject.org/files/ENCFF401PIJ/@@download/ENCFF401PIJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF836KLS bam unfiltered alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF266IUJ, ENCFF643CGH 822990376 ENCODE Processing Pipeline c2112f1605daa7f8e37d685bb61cff6c https://www.encodeproject.org/files/ENCFF836KLS/@@download/ENCFF836KLS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF265DVZ bigWig signal p-value ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF277QYK, ENCFF477SGV 476893688 ENCODE Processing Pipeline e25310dc1c974c467567436024ef34d0 https://www.encodeproject.org/files/ENCFF265DVZ/@@download/ENCFF265DVZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF982EOG bigWig signal p-value ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF705ZEH, ENCFF763SGF 389413173 ENCODE Processing Pipeline 5a97c7ed9c88196587442e273781647e https://www.encodeproject.org/files/ENCFF982EOG/@@download/ENCFF982EOG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF483OPS bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF277QYK, ENCFF477SGV, ENCFF705ZEH, ENCFF763SGF 6606501 ENCODE Processing Pipeline f989fb04464a87a582f7f149a97c6a87 https://www.encodeproject.org/files/ENCFF483OPS/@@download/ENCFF483OPS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF027JQE bigBed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF483OPS 13154638 ENCODE Processing Pipeline e242ffe570c49cdb303809c4ffbd6087 https://www.encodeproject.org/files/ENCFF027JQE/@@download/ENCFF027JQE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF232JTU bigBed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF625DLL 12973955 ENCODE Processing Pipeline b3873625bfa5d9574536f35e8dedfc1f https://www.encodeproject.org/files/ENCFF232JTU/@@download/ENCFF232JTU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF015FMA bigWig fold change over control ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF705ZEH, ENCFF763SGF 288694026 ENCODE Processing Pipeline f55a1eec7e938116125a2fc2e6ada84e https://www.encodeproject.org/files/ENCFF015FMA/@@download/ENCFF015FMA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF822WFQ bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF277QYK, ENCFF477SGV 4658233 ENCODE Processing Pipeline 878975b13bc47e7307609fc440a60b24 https://www.encodeproject.org/files/ENCFF822WFQ/@@download/ENCFF822WFQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF625DLL bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF705ZEH, ENCFF763SGF 5167937 ENCODE Processing Pipeline 993512bb20f3eefb5731f9d5dc7a5701 https://www.encodeproject.org/files/ENCFF625DLL/@@download/ENCFF625DLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF615WNQ bigBed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF822WFQ 12773782 ENCODE Processing Pipeline 14ae62f12ef6bbef83745142a6d8c557 https://www.encodeproject.org/files/ENCFF615WNQ/@@download/ENCFF615WNQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF899DUS bigBed narrowPeak optimal idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF398EQF 83061 ENCODE Processing Pipeline 4e5b3c71785e9ea9a538e0b2e64f95d3 https://www.encodeproject.org/files/ENCFF899DUS/@@download/ENCFF899DUS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF757MVK bigWig fold change over control ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF277QYK, ENCFF477SGV, ENCFF705ZEH, ENCFF763SGF 610172760 ENCODE Processing Pipeline 151fad9e42d3c794ee3761e4180a18ad https://www.encodeproject.org/files/ENCFF757MVK/@@download/ENCFF757MVK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF398EQF bed narrowPeak optimal idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF483OPS, ENCFF625DLL, ENCFF822WFQ 2627 ENCODE Processing Pipeline 19e5d6b9e2057d0d4abbb65736d1ed41 https://www.encodeproject.org/files/ENCFF398EQF/@@download/ENCFF398EQF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF589ZXE bigWig signal p-value ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF277QYK, ENCFF477SGV, ENCFF705ZEH, ENCFF763SGF 779146328 ENCODE Processing Pipeline 9a1fef31c7eb6d559f41719b98b8ec32 https://www.encodeproject.org/files/ENCFF589ZXE/@@download/ENCFF589ZXE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF220HWQ bigWig fold change over control ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF277QYK, ENCFF477SGV 246950910 ENCODE Processing Pipeline 4a4d0c3de6f6893d989a77a3a78b16c0 https://www.encodeproject.org/files/ENCFF220HWQ/@@download/ENCFF220HWQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF158UTC bed narrowPeak conservative idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF483OPS, ENCFF625DLL, ENCFF822WFQ 1732 ENCODE Processing Pipeline 50944a58277f3e170177b818980c2d61 https://www.encodeproject.org/files/ENCFF158UTC/@@download/ENCFF158UTC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF205VNR bigBed narrowPeak conservative idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF158UTC 79591 ENCODE Processing Pipeline 9e6cff7db5471c6892e797a9e0eefc15 https://www.encodeproject.org/files/ENCFF205VNR/@@download/ENCFF205VNR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF417NBE bigWig signal p-value ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF308PSW, ENCFF762TAN 404248257 ENCODE Processing Pipeline fac932d965dc5523ff4630436ce78875 https://www.encodeproject.org/files/ENCFF417NBE/@@download/ENCFF417NBE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF777URT bigWig signal p-value ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF198JCQ, ENCFF308PSW, ENCFF401PIJ, ENCFF762TAN 736584615 ENCODE Processing Pipeline 5a664487933719f987cf15860db53d79 https://www.encodeproject.org/files/ENCFF777URT/@@download/ENCFF777URT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF982KEW bigWig fold change over control ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF308PSW, ENCFF762TAN 243237993 ENCODE Processing Pipeline 38d46e7039a92570df04384f402e7440 https://www.encodeproject.org/files/ENCFF982KEW/@@download/ENCFF982KEW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF426XGS bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF198JCQ, ENCFF308PSW, ENCFF401PIJ, ENCFF762TAN 6505182 ENCODE Processing Pipeline 99350262ac7943f9227e3cb0fa4ba347 https://www.encodeproject.org/files/ENCFF426XGS/@@download/ENCFF426XGS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF975GRW bigBed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF066HLE 12953173 ENCODE Processing Pipeline 7429bdb3ef3b8941765bbeaebf1dab57 https://www.encodeproject.org/files/ENCFF975GRW/@@download/ENCFF975GRW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF304HRB bigWig signal p-value ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF401PIJ 462450402 ENCODE Processing Pipeline 9e02c9acc4e45337abb0c2d4b6ffff84 https://www.encodeproject.org/files/ENCFF304HRB/@@download/ENCFF304HRB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF484LUS bigWig fold change over control ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF198JCQ, ENCFF308PSW, ENCFF401PIJ, ENCFF762TAN 607974366 ENCODE Processing Pipeline eeb0ce2376653efebf1f2f27e65a2d9c https://www.encodeproject.org/files/ENCFF484LUS/@@download/ENCFF484LUS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF066HLE bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF401PIJ 4982431 ENCODE Processing Pipeline 15e59b05b5928d30eda2613bc93d46c8 https://www.encodeproject.org/files/ENCFF066HLE/@@download/ENCFF066HLE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF148QJF bigWig fold change over control ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF401PIJ 288394095 ENCODE Processing Pipeline 1c512f2ffa69c545dfaa7b8057ff9a7e https://www.encodeproject.org/files/ENCFF148QJF/@@download/ENCFF148QJF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF570EIH bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF308PSW, ENCFF762TAN 4821490 ENCODE Processing Pipeline 4ecdb1a295234ecf76211fcaf3b89633 https://www.encodeproject.org/files/ENCFF570EIH/@@download/ENCFF570EIH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF835UTB bigBed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF570EIH 12876026 ENCODE Processing Pipeline 8867356d2d38f35126cc33b5a193b385 https://www.encodeproject.org/files/ENCFF835UTB/@@download/ENCFF835UTB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF320ATP bigBed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF426XGS 13197557 ENCODE Processing Pipeline 06e90cdd79392c927a7912391a250585 https://www.encodeproject.org/files/ENCFF320ATP/@@download/ENCFF320ATP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF904KHM bed narrowPeak conservative idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF066HLE, ENCFF419RSJ, ENCFF426XGS, ENCFF570EIH 2119 ENCODE Processing Pipeline a1de03cec7e8355db6639fc516bab94c https://www.encodeproject.org/files/ENCFF904KHM/@@download/ENCFF904KHM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF244ZQC bigBed narrowPeak optimal idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF134HBP 83416 ENCODE Processing Pipeline d283b80fe9c674e8a0918abf3105efd4 https://www.encodeproject.org/files/ENCFF244ZQC/@@download/ENCFF244ZQC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF134HBP bed narrowPeak optimal idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF066HLE, ENCFF419RSJ, ENCFF426XGS, ENCFF570EIH 2589 ENCODE Processing Pipeline b2b9461da7b80c05b72cd1f582905da4 https://www.encodeproject.org/files/ENCFF134HBP/@@download/ENCFF134HBP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF731VBL bigBed narrowPeak conservative idr thresholded peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF904KHM 81762 ENCODE Processing Pipeline 447f058703735ecf3706ed67787fd11f https://www.encodeproject.org/files/ENCFF731VBL/@@download/ENCFF731VBL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF626IDD bam unfiltered alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 50 ENCFF576YQE, ENCFF807MUK, ENCFF863YQQ 1505570495 ENCODE Processing Pipeline 15a6e7699755d7fdd333de2c3aec004d https://www.encodeproject.org/files/ENCFF626IDD/@@download/ENCFF626IDD.bam hg19 released low read depth, missing genetic modification characterization ENCFF145SMA bam unfiltered alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 50 ENCFF458SBM, ENCFF807MUK, ENCFF922XIL 2183066928 ENCODE Processing Pipeline 008c1c10f365232044c7ee97fa533ae3 https://www.encodeproject.org/files/ENCFF145SMA/@@download/ENCFF145SMA.bam hg19 released low read depth, missing genetic modification characterization ENCFF576YQE fastq reads ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 675771947 Kevin White, UChicago 6d8873cd85158cc5e8ba7c38851d6bf4 SRA:SRR6214093 https://www.encodeproject.org/files/ENCFF576YQE/@@download/ENCFF576YQE.fastq.gz Illumina HiSeq 2500 /files/ENCFF656LJN/ released low read depth, missing genetic modification characterization ENCFF458SBM fastq reads ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 818178121 Kevin White, UChicago 040184a246085218fed907d0348c154a SRA:SRR6214095 https://www.encodeproject.org/files/ENCFF458SBM/@@download/ENCFF458SBM.fastq.gz Illumina HiSeq 2500 /files/ENCFF656LJN/ released low read depth, missing genetic modification characterization ENCFF922XIL fastq reads ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1210520770 Kevin White, UChicago b72d9fd28f15c85cc4ea295ec981ecf6 SRA:SRR6214096 https://www.encodeproject.org/files/ENCFF922XIL/@@download/ENCFF922XIL.fastq.gz Illumina HiSeq 2500 /files/ENCFF656LJN/ released low read depth, missing genetic modification characterization ENCFF863YQQ fastq reads ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 826660513 Kevin White, UChicago 58284919776b4fce38c9e74b21f9a67c SRA:SRR6214094 https://www.encodeproject.org/files/ENCFF863YQQ/@@download/ENCFF863YQQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF656LJN/ released low read depth, missing genetic modification characterization ENCFF729SVH bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 50 ENCFF576YQE, ENCFF807MUK, ENCFF863YQQ 860310018 ENCODE Processing Pipeline ddcc463a24771860d8a493a68ff4350c https://www.encodeproject.org/files/ENCFF729SVH/@@download/ENCFF729SVH.bam hg19 released low read depth, missing genetic modification characterization ENCFF968XOX bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 50 ENCFF458SBM, ENCFF807MUK, ENCFF922XIL 1639888456 ENCODE Processing Pipeline d7485c91458acf6e9b2fa55205ab1626 https://www.encodeproject.org/files/ENCFF968XOX/@@download/ENCFF968XOX.bam hg19 released low read depth, missing genetic modification characterization ENCFF914DDL bigWig signal p-value ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF479IHH, ENCFF968XOX 671949860 ENCODE Processing Pipeline 14c4a7f7fad91ab3361297acc934b7f4 https://www.encodeproject.org/files/ENCFF914DDL/@@download/ENCFF914DDL.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF740FKH bigWig signal p-value ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF479IHH, ENCFF729SVH, ENCFF968XOX 950554284 ENCODE Processing Pipeline de875a7514a660288b05fc2f502978c9 https://www.encodeproject.org/files/ENCFF740FKH/@@download/ENCFF740FKH.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF414KMD bigWig signal p-value ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF479IHH, ENCFF729SVH 688944900 ENCODE Processing Pipeline fbdca1b07080894324f22185f6364b41 https://www.encodeproject.org/files/ENCFF414KMD/@@download/ENCFF414KMD.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF709AGW bigWig fold change over control ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF479IHH, ENCFF729SVH 541459495 ENCODE Processing Pipeline 053ac481a653a5de7925f714bb080a05 https://www.encodeproject.org/files/ENCFF709AGW/@@download/ENCFF709AGW.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF704VBL bigWig fold change over control ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF479IHH, ENCFF968XOX 817092094 ENCODE Processing Pipeline 984614b3724b229d2d19e7b7642c3d4a https://www.encodeproject.org/files/ENCFF704VBL/@@download/ENCFF704VBL.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF768USG bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF479IHH, ENCFF968XOX 6946843 ENCODE Processing Pipeline 745f5ce37edc7b4e7134cbfed6a06e23 https://www.encodeproject.org/files/ENCFF768USG/@@download/ENCFF768USG.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF908OPJ bigWig fold change over control ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF479IHH, ENCFF729SVH, ENCFF968XOX 1062782670 ENCODE Processing Pipeline 50547ebcf33f1afabb981c6ab6bbf963 https://www.encodeproject.org/files/ENCFF908OPJ/@@download/ENCFF908OPJ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF587MUY bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF479IHH, ENCFF729SVH 6674009 ENCODE Processing Pipeline 3478ef7e080c45e4d353062fb4157e75 https://www.encodeproject.org/files/ENCFF587MUY/@@download/ENCFF587MUY.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF887PEG bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF479IHH, ENCFF729SVH, ENCFF968XOX 7208367 ENCODE Processing Pipeline 468c5f095b3bfa17490c180ac3fb2ec4 https://www.encodeproject.org/files/ENCFF887PEG/@@download/ENCFF887PEG.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF907NRC bigBed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF587MUY 12897313 ENCODE Processing Pipeline fbfdf73e35d29faafd20524d8e54cabf https://www.encodeproject.org/files/ENCFF907NRC/@@download/ENCFF907NRC.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF625UAI bigBed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF768USG 13057071 ENCODE Processing Pipeline 92ab26af6d87c9382748ba4e4898104b https://www.encodeproject.org/files/ENCFF625UAI/@@download/ENCFF625UAI.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF373ESZ bigBed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF887PEG 12945359 ENCODE Processing Pipeline 763b29b2b69a01adfd98babf855ba1b9 https://www.encodeproject.org/files/ENCFF373ESZ/@@download/ENCFF373ESZ.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF871UOO bam unfiltered alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 50 ENCFF576YQE, ENCFF643CGH, ENCFF863YQQ 1509835271 ENCODE Processing Pipeline 9dcf409ccbb3934a384a2f89caf3f3f8 https://www.encodeproject.org/files/ENCFF871UOO/@@download/ENCFF871UOO.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF095OEN bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 50 ENCFF576YQE, ENCFF643CGH, ENCFF863YQQ 859802968 ENCODE Processing Pipeline ad7a4ed5d0a40c67bdf084940c641ca0 https://www.encodeproject.org/files/ENCFF095OEN/@@download/ENCFF095OEN.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF883WDV bam unfiltered alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 50 ENCFF458SBM, ENCFF643CGH, ENCFF922XIL 2192124258 ENCODE Processing Pipeline 1cab118ef1f5121188229cedfb0de87c https://www.encodeproject.org/files/ENCFF883WDV/@@download/ENCFF883WDV.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF334BPF bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 50 ENCFF458SBM, ENCFF643CGH, ENCFF922XIL 1639215325 ENCODE Processing Pipeline b89d5b07915b7a88a4bbc2f78f30925a https://www.encodeproject.org/files/ENCFF334BPF/@@download/ENCFF334BPF.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF593OQW bigWig signal p-value ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF095OEN, ENCFF334BPF, ENCFF493VPN 956355872 ENCODE Processing Pipeline cfebc30494406be6af3e1325fdbf6c85 https://www.encodeproject.org/files/ENCFF593OQW/@@download/ENCFF593OQW.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF630JZM bigWig signal p-value ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF095OEN, ENCFF493VPN 566288494 ENCODE Processing Pipeline 5b71abba196d09f5f91beb6fee0c6a11 https://www.encodeproject.org/files/ENCFF630JZM/@@download/ENCFF630JZM.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF381POK bigWig signal p-value ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF334BPF, ENCFF493VPN 783605527 ENCODE Processing Pipeline 5977a8f44952996333f1bcddd9bcda81 https://www.encodeproject.org/files/ENCFF381POK/@@download/ENCFF381POK.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF123TST bigWig fold change over control ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF095OEN, ENCFF493VPN 544526555 ENCODE Processing Pipeline 9e8f37a988624a8a0a67d9d9431ed4c1 https://www.encodeproject.org/files/ENCFF123TST/@@download/ENCFF123TST.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF371WIN bigWig fold change over control ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF334BPF, ENCFF493VPN 805809493 ENCODE Processing Pipeline a01fccb0ebe8cbded89b903b4acba683 https://www.encodeproject.org/files/ENCFF371WIN/@@download/ENCFF371WIN.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF837LRU bigWig fold change over control ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF095OEN, ENCFF334BPF, ENCFF493VPN 1070457336 ENCODE Processing Pipeline e7a190e40c80734dc8e1a8d1d5f0f42b https://www.encodeproject.org/files/ENCFF837LRU/@@download/ENCFF837LRU.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF407ACB bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF095OEN, ENCFF493VPN 6443870 ENCODE Processing Pipeline cffab73e1a6d1edb009062a0a1eb3aec https://www.encodeproject.org/files/ENCFF407ACB/@@download/ENCFF407ACB.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF843NMG bigBed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF407ACB 12919038 ENCODE Processing Pipeline 6acbc7d1b246da2824a731ab7d0c4eb1 https://www.encodeproject.org/files/ENCFF843NMG/@@download/ENCFF843NMG.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF532YUW bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF334BPF, ENCFF493VPN 6821457 ENCODE Processing Pipeline 90ee3c724f2f52ebb0e20150e7ab2636 https://www.encodeproject.org/files/ENCFF532YUW/@@download/ENCFF532YUW.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF591NGE bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF095OEN, ENCFF334BPF, ENCFF493VPN 7128913 ENCODE Processing Pipeline 35d373d6c1212b46b6bad82eb9b94b9c https://www.encodeproject.org/files/ENCFF591NGE/@@download/ENCFF591NGE.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF716JRY bigBed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF532YUW 13060211 ENCODE Processing Pipeline 2226eb9070e81f0af43045d6c987b8a4 https://www.encodeproject.org/files/ENCFF716JRY/@@download/ENCFF716JRY.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF499LJX bed narrowPeak conservative idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF407ACB, ENCFF419RSJ, ENCFF532YUW, ENCFF591NGE 237843 ENCODE Processing Pipeline 22ae967510f40d8631aab8ab35b873e9 https://www.encodeproject.org/files/ENCFF499LJX/@@download/ENCFF499LJX.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF309VCI bigBed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF591NGE 12951811 ENCODE Processing Pipeline 953a072409723a3a3128f6ccd7f2e824 https://www.encodeproject.org/files/ENCFF309VCI/@@download/ENCFF309VCI.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF038XLK bigBed narrowPeak conservative idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF499LJX 585768 ENCODE Processing Pipeline 8913a459c847b8aecd2897d592398f57 https://www.encodeproject.org/files/ENCFF038XLK/@@download/ENCFF038XLK.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF977ZNJ bed narrowPeak optimal idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF407ACB, ENCFF419RSJ, ENCFF532YUW, ENCFF591NGE 237807 ENCODE Processing Pipeline ba773340d82d813138597b5654be9d93 https://www.encodeproject.org/files/ENCFF977ZNJ/@@download/ENCFF977ZNJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF551EXL bigBed narrowPeak optimal idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF977ZNJ 587477 ENCODE Processing Pipeline 1fd96ef7be301be023251f9767319f47 https://www.encodeproject.org/files/ENCFF551EXL/@@download/ENCFF551EXL.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF377ZLR bed narrowPeak conservative idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF587MUY, ENCFF768USG, ENCFF887PEG 192374 ENCODE Processing Pipeline 30ce346d0419f40d40f18293b8a6c329 https://www.encodeproject.org/files/ENCFF377ZLR/@@download/ENCFF377ZLR.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF007UDB bigBed narrowPeak conservative idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF377ZLR 432132 ENCODE Processing Pipeline b48fe66066935f6a32540c04040e9dbb https://www.encodeproject.org/files/ENCFF007UDB/@@download/ENCFF007UDB.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF173NRW bed narrowPeak optimal idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF587MUY, ENCFF768USG, ENCFF887PEG 196576 ENCODE Processing Pipeline 88b2198aa6b7cfb45030cc7203fa53c3 https://www.encodeproject.org/files/ENCFF173NRW/@@download/ENCFF173NRW.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF160DOO bigBed narrowPeak optimal idr thresholded peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF173NRW 439630 ENCODE Processing Pipeline ed1241980833456e55ad8aac41bbde99 https://www.encodeproject.org/files/ENCFF160DOO/@@download/ENCFF160DOO.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF204UTF fastq reads ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1236585185 Richard Myers, HAIB a62a426053096850e2f387b9ddf416f0 SRA:SRR5339549 https://www.encodeproject.org/files/ENCFF204UTF/@@download/ENCFF204UTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF380ESC fastq reads ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2695086115 Richard Myers, HAIB 105a0bbc183708f93474eb0a019cda1a SRA:SRR5339548 https://www.encodeproject.org/files/ENCFF380ESC/@@download/ENCFF380ESC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF666VJD bam unfiltered alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF204UTF, ENCFF643CGH 1428072746 ENCODE Processing Pipeline c3d805749af1fc221091b5d7115b9f37 https://www.encodeproject.org/files/ENCFF666VJD/@@download/ENCFF666VJD.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF741PDQ bam unfiltered alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF204UTF, ENCFF807MUK 1426578890 ENCODE Processing Pipeline e5c5b030b904de455adb6f4ed4449ec5 https://www.encodeproject.org/files/ENCFF741PDQ/@@download/ENCFF741PDQ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF833YVO bam unfiltered alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF380ESC, ENCFF643CGH 3057561487 ENCODE Processing Pipeline 010741bf74864e6f93311f61db307332 https://www.encodeproject.org/files/ENCFF833YVO/@@download/ENCFF833YVO.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF919VWI bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF204UTF, ENCFF643CGH 1108223924 ENCODE Processing Pipeline 164175baa13db5fca8ebbdce17386150 https://www.encodeproject.org/files/ENCFF919VWI/@@download/ENCFF919VWI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF641GJH bam unfiltered alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF380ESC, ENCFF807MUK 3049170369 ENCODE Processing Pipeline 29e84c465d05751da8497ee7fba8f745 https://www.encodeproject.org/files/ENCFF641GJH/@@download/ENCFF641GJH.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF484TNT bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF204UTF, ENCFF807MUK 1108078524 ENCODE Processing Pipeline 4398aeaea044b4c6f105de8d76edaec7 https://www.encodeproject.org/files/ENCFF484TNT/@@download/ENCFF484TNT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF230UKQ bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF380ESC, ENCFF643CGH 1907169148 ENCODE Processing Pipeline 84e80678347d0cb1368cb14637351eef https://www.encodeproject.org/files/ENCFF230UKQ/@@download/ENCFF230UKQ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF361EAX bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF380ESC, ENCFF807MUK 1905614730 ENCODE Processing Pipeline 7394f3f50c62a57f98701ff75966d95b https://www.encodeproject.org/files/ENCFF361EAX/@@download/ENCFF361EAX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF278VAU bigWig signal p-value ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF919VWI 479839725 ENCODE Processing Pipeline c4b9fc307b4b70bcb7b5d4ad95f736d0 https://www.encodeproject.org/files/ENCFF278VAU/@@download/ENCFF278VAU.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF036XJT bigWig signal p-value ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF230UKQ, ENCFF919VWI 680247465 ENCODE Processing Pipeline 4a35366a9627de5452663453f4a6176e https://www.encodeproject.org/files/ENCFF036XJT/@@download/ENCFF036XJT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF196HQV bigWig signal p-value ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF230UKQ 693544154 ENCODE Processing Pipeline 7d69471d5f9294d1e54954739175ac34 https://www.encodeproject.org/files/ENCFF196HQV/@@download/ENCFF196HQV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF587XTM bigWig fold change over control ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF919VWI 425731186 ENCODE Processing Pipeline 96c04040678333f2a0107fba4dd8bd70 https://www.encodeproject.org/files/ENCFF587XTM/@@download/ENCFF587XTM.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF309ZRK bigWig fold change over control ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF230UKQ, ENCFF919VWI 942982710 ENCODE Processing Pipeline 07538c970e3ed41ef9661786dabdd348 https://www.encodeproject.org/files/ENCFF309ZRK/@@download/ENCFF309ZRK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF863ZRE bigWig fold change over control ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF230UKQ 683352527 ENCODE Processing Pipeline a88667b73d1d6b060b6dcb2fdc439277 https://www.encodeproject.org/files/ENCFF863ZRE/@@download/ENCFF863ZRE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF069IJL bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF919VWI 6557768 ENCODE Processing Pipeline 9b40dd34ff15054638800e7bffdc645f https://www.encodeproject.org/files/ENCFF069IJL/@@download/ENCFF069IJL.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF162JPL bigBed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF069IJL 12603350 ENCODE Processing Pipeline 9e1bf3097a9543f1aa36159c2c3af5a8 https://www.encodeproject.org/files/ENCFF162JPL/@@download/ENCFF162JPL.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF097RQZ bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF230UKQ, ENCFF919VWI 7119888 ENCODE Processing Pipeline 9cecd6eb95b8265b92b3fb4c6e5611eb https://www.encodeproject.org/files/ENCFF097RQZ/@@download/ENCFF097RQZ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF288LDH bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF230UKQ 6437554 ENCODE Processing Pipeline d5a1322813c0eb3d58df678181463954 https://www.encodeproject.org/files/ENCFF288LDH/@@download/ENCFF288LDH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF379KTR bigBed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF288LDH 13032496 ENCODE Processing Pipeline 8fac253c2e12c3613e4060b31b81ef76 https://www.encodeproject.org/files/ENCFF379KTR/@@download/ENCFF379KTR.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF010PMS bigBed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF097RQZ 12710121 ENCODE Processing Pipeline 12d1446a1bd3ec0d519ad38691ba3343 https://www.encodeproject.org/files/ENCFF010PMS/@@download/ENCFF010PMS.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF701OWK bed narrowPeak conservative idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF069IJL, ENCFF097RQZ, ENCFF288LDH, ENCFF419RSJ 284765 ENCODE Processing Pipeline be348525c34b43f016ea3b36e4a68d4c https://www.encodeproject.org/files/ENCFF701OWK/@@download/ENCFF701OWK.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF190PJP bigBed narrowPeak conservative idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF701OWK 593864 ENCODE Processing Pipeline 0bcc011aee2d3d762429c52d9ed144c1 https://www.encodeproject.org/files/ENCFF190PJP/@@download/ENCFF190PJP.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF985DMC bed narrowPeak optimal idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF069IJL, ENCFF097RQZ, ENCFF288LDH, ENCFF419RSJ 321854 ENCODE Processing Pipeline 886a3da7c7136ff18010c28bb64cbe76 https://www.encodeproject.org/files/ENCFF985DMC/@@download/ENCFF985DMC.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF734VWO bigBed narrowPeak optimal idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF985DMC 652424 ENCODE Processing Pipeline 1c8d9a928c6744d0d95168691e2c905b https://www.encodeproject.org/files/ENCFF734VWO/@@download/ENCFF734VWO.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463LIP bigWig signal p-value ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF484TNT 1193012286 ENCODE Processing Pipeline d78bbb0e1cde8952d74a4c98cfef33b0 https://www.encodeproject.org/files/ENCFF463LIP/@@download/ENCFF463LIP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF059QBN bigWig signal p-value ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF361EAX 1325666130 ENCODE Processing Pipeline d7095b75102916b38face800ba97b2f8 https://www.encodeproject.org/files/ENCFF059QBN/@@download/ENCFF059QBN.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF381UTK bigWig signal p-value ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF361EAX, ENCFF484TNT 1468712311 ENCODE Processing Pipeline 0217969ff6468b5fc9169d852f939f4e https://www.encodeproject.org/files/ENCFF381UTK/@@download/ENCFF381UTK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF426VJQ bigWig fold change over control ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF484TNT 762750436 ENCODE Processing Pipeline 697f23fb57eed55ddca2ff108377e283 https://www.encodeproject.org/files/ENCFF426VJQ/@@download/ENCFF426VJQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF192WMG bigWig fold change over control ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF361EAX 1224591433 ENCODE Processing Pipeline 06183362be67ba3a7c6aad43b8035988 https://www.encodeproject.org/files/ENCFF192WMG/@@download/ENCFF192WMG.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF897JCJ bigWig fold change over control ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF361EAX, ENCFF484TNT 1486917319 ENCODE Processing Pipeline e4af5fed511b02c1853097b11dc7f104 https://www.encodeproject.org/files/ENCFF897JCJ/@@download/ENCFF897JCJ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF545KPN bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF361EAX 7072656 ENCODE Processing Pipeline 2baef025f9d76209d7680d63137d7918 https://www.encodeproject.org/files/ENCFF545KPN/@@download/ENCFF545KPN.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF978QAA bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF484TNT 6955552 ENCODE Processing Pipeline 59c24a48ed7ffaf7d0b794ac374aad33 https://www.encodeproject.org/files/ENCFF978QAA/@@download/ENCFF978QAA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF590MES bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF361EAX, ENCFF484TNT 7112325 ENCODE Processing Pipeline 167e5825e2698135ca8db8e6b2c3025a https://www.encodeproject.org/files/ENCFF590MES/@@download/ENCFF590MES.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF055WBR bigBed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF978QAA 12541759 ENCODE Processing Pipeline 39aee13b1a3cd6cd7a282718b9304e24 https://www.encodeproject.org/files/ENCFF055WBR/@@download/ENCFF055WBR.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF118RVY bigBed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF545KPN 12995010 ENCODE Processing Pipeline 9ca7d51a52a52a5064ed29fd7c29f1a0 https://www.encodeproject.org/files/ENCFF118RVY/@@download/ENCFF118RVY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF632XYL bigBed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF590MES 12574546 ENCODE Processing Pipeline 528bf7f72a44162564cca87cb7904ecd https://www.encodeproject.org/files/ENCFF632XYL/@@download/ENCFF632XYL.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF486ZPT bed narrowPeak conservative idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF545KPN, ENCFF590MES, ENCFF978QAA 273465 ENCODE Processing Pipeline 5ff799eb111847cbe275f725604e70d7 https://www.encodeproject.org/files/ENCFF486ZPT/@@download/ENCFF486ZPT.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF212VYK bigBed narrowPeak conservative idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF486ZPT 613522 ENCODE Processing Pipeline fb7af2b6312a03962d4a26a9e1ddde9d https://www.encodeproject.org/files/ENCFF212VYK/@@download/ENCFF212VYK.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428NSH bed narrowPeak optimal idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF545KPN, ENCFF590MES, ENCFF978QAA 303101 ENCODE Processing Pipeline 02b233f3de90b5ec0e421cb78c17788f https://www.encodeproject.org/files/ENCFF428NSH/@@download/ENCFF428NSH.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF905CAY bigBed narrowPeak optimal idr thresholded peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF428NSH 660568 ENCODE Processing Pipeline 2928bd7b4dbfc7ac3c795a0f182a2c6d https://www.encodeproject.org/files/ENCFF905CAY/@@download/ENCFF905CAY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF844LMK fastq reads ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 1 50 single-ended 1161609936 Richard Myers, HAIB e967b2e760c7478a53f27afa838b6342 SRA:SRR5331523 https://www.encodeproject.org/files/ENCFF844LMK/@@download/ENCFF844LMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF617BUV fastq reads ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 1 50 single-ended 1169964687 Richard Myers, HAIB 0d8a8ec19594ee5364a499629604625f SRA:SRR5331524 https://www.encodeproject.org/files/ENCFF617BUV/@@download/ENCFF617BUV.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF559XKV bam unfiltered alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 50 ENCFF617BUV, ENCFF807MUK 1296223971 ENCODE Processing Pipeline 9bea60b1cdf573f4e10b19236db567b9 https://www.encodeproject.org/files/ENCFF559XKV/@@download/ENCFF559XKV.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF279IGS bam unfiltered alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 50 ENCFF617BUV, ENCFF643CGH 1301423410 ENCODE Processing Pipeline f794f4e8966b8ebaad800f78d84b1f2c https://www.encodeproject.org/files/ENCFF279IGS/@@download/ENCFF279IGS.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF077FJW bam unfiltered alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 50 ENCFF807MUK, ENCFF844LMK 1275808367 ENCODE Processing Pipeline 9058b351f275d8a9dfffa45d2040ed6b https://www.encodeproject.org/files/ENCFF077FJW/@@download/ENCFF077FJW.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF847VNA bam unfiltered alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 50 ENCFF643CGH, ENCFF844LMK 1280534799 ENCODE Processing Pipeline cafcbfbb004b30bd26853c2a27dadbac https://www.encodeproject.org/files/ENCFF847VNA/@@download/ENCFF847VNA.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF643YHU bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 50 ENCFF617BUV, ENCFF807MUK 979293603 ENCODE Processing Pipeline 6fd0088fc1d797eee9b05da33704130d https://www.encodeproject.org/files/ENCFF643YHU/@@download/ENCFF643YHU.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF445RPP bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 50 ENCFF643CGH, ENCFF844LMK 954650286 ENCODE Processing Pipeline 6e7917a03c5470d6ac537f963d637fa8 https://www.encodeproject.org/files/ENCFF445RPP/@@download/ENCFF445RPP.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF924APX bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 50 ENCFF807MUK, ENCFF844LMK 954864000 ENCODE Processing Pipeline f1d91a60ca91d02f09fab505a67e1fc1 https://www.encodeproject.org/files/ENCFF924APX/@@download/ENCFF924APX.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF655ZAY bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 50 ENCFF617BUV, ENCFF643CGH 979178133 ENCODE Processing Pipeline a77a7c905e2d93aea726dfc75ebf5c32 https://www.encodeproject.org/files/ENCFF655ZAY/@@download/ENCFF655ZAY.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF647OLL bigWig signal p-value ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF445RPP, ENCFF582CVJ 445209185 ENCODE Processing Pipeline eed895045d5e428190d6cde084f2e317 https://www.encodeproject.org/files/ENCFF647OLL/@@download/ENCFF647OLL.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF366UUA bigWig fold change over control ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF582CVJ, ENCFF655ZAY 418907397 ENCODE Processing Pipeline facaff47a38b1591cee2e93bdfe2b707 https://www.encodeproject.org/files/ENCFF366UUA/@@download/ENCFF366UUA.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF328BZE bigWig signal p-value ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF445RPP, ENCFF582CVJ, ENCFF655ZAY 446053388 ENCODE Processing Pipeline 197ba15d866d5ab745a7d65fa2fa04f3 https://www.encodeproject.org/files/ENCFF328BZE/@@download/ENCFF328BZE.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF902HHU bigWig signal p-value ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF582CVJ, ENCFF655ZAY 451003145 ENCODE Processing Pipeline d988eae540f65c5ffd40e247db8eee4e https://www.encodeproject.org/files/ENCFF902HHU/@@download/ENCFF902HHU.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF902HFT bigWig fold change over control ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF445RPP, ENCFF582CVJ 404245005 ENCODE Processing Pipeline 5142fce9e208b3f27f53c2f24f9bd297 https://www.encodeproject.org/files/ENCFF902HFT/@@download/ENCFF902HFT.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF647SZE bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF445RPP, ENCFF582CVJ 5883329 ENCODE Processing Pipeline 6875934bd2177a77d5a48872f4e40f51 https://www.encodeproject.org/files/ENCFF647SZE/@@download/ENCFF647SZE.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF604LLC bigBed narrowPeak optimal idr thresholded peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF960FKQ 588638 ENCODE Processing Pipeline fe812b18f88afb0fbacb45164bee8990 https://www.encodeproject.org/files/ENCFF604LLC/@@download/ENCFF604LLC.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF490YHP bigWig fold change over control ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF445RPP, ENCFF582CVJ, ENCFF655ZAY 710447731 ENCODE Processing Pipeline b19c23bf0cce7a8fa8e71949590f6a39 https://www.encodeproject.org/files/ENCFF490YHP/@@download/ENCFF490YHP.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF535GRR bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF445RPP, ENCFF582CVJ, ENCFF655ZAY 6626314 ENCODE Processing Pipeline 9173a1f39ba8530041b5f5474228e9fc https://www.encodeproject.org/files/ENCFF535GRR/@@download/ENCFF535GRR.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF240KQW bigBed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF535GRR 12989056 ENCODE Processing Pipeline ddfecf2e69b25afadf68ad0d299758e6 https://www.encodeproject.org/files/ENCFF240KQW/@@download/ENCFF240KQW.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF924ZVH bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF582CVJ, ENCFF655ZAY 5621501 ENCODE Processing Pipeline 20168d352852c9c7bd775530cad9916f https://www.encodeproject.org/files/ENCFF924ZVH/@@download/ENCFF924ZVH.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF960FKQ bed narrowPeak optimal idr thresholded peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF535GRR, ENCFF647SZE, ENCFF924ZVH 286941 ENCODE Processing Pipeline f628951dfed81605d2a8419a751b9496 https://www.encodeproject.org/files/ENCFF960FKQ/@@download/ENCFF960FKQ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF601HPL bigBed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF924ZVH 13020014 ENCODE Processing Pipeline 3214c6fa23dfca1bf2dc5c09e217dce6 https://www.encodeproject.org/files/ENCFF601HPL/@@download/ENCFF601HPL.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF768NTZ bigBed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF647SZE 12963425 ENCODE Processing Pipeline 14760ab67cc3ea422dc4c8d3dde80b4b https://www.encodeproject.org/files/ENCFF768NTZ/@@download/ENCFF768NTZ.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF427ZHX bigBed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF656YTE 12959631 ENCODE Processing Pipeline 86bac541133422f63dc6a5df3568f5c5 https://www.encodeproject.org/files/ENCFF427ZHX/@@download/ENCFF427ZHX.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF423YCB bigWig fold change over control ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF023YTY, ENCFF924APX 409613266 ENCODE Processing Pipeline 0a687f9a74ddd2080a311e0039329203 https://www.encodeproject.org/files/ENCFF423YCB/@@download/ENCFF423YCB.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF010ZCB bigWig fold change over control ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF023YTY, ENCFF643YHU, ENCFF924APX 708524030 ENCODE Processing Pipeline c1228682c303c09f5881727d3c6d98f7 https://www.encodeproject.org/files/ENCFF010ZCB/@@download/ENCFF010ZCB.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF404HWH bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF023YTY, ENCFF643YHU 5631730 ENCODE Processing Pipeline 14aabb19bc4822c0a595ac1225ac6680 https://www.encodeproject.org/files/ENCFF404HWH/@@download/ENCFF404HWH.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF656YTE bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF023YTY, ENCFF643YHU, ENCFF924APX 6659970 ENCODE Processing Pipeline 04d1dd85a68c17fedbb5b2664c025f56 https://www.encodeproject.org/files/ENCFF656YTE/@@download/ENCFF656YTE.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF837RNN bigBed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF020KDS 12967741 ENCODE Processing Pipeline 48ee2926f57588075894cfad43935975 https://www.encodeproject.org/files/ENCFF837RNN/@@download/ENCFF837RNN.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF363VZN bigWig signal p-value ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF023YTY, ENCFF924APX 447933599 ENCODE Processing Pipeline b79dc29a81ca61988b1258dc98929580 https://www.encodeproject.org/files/ENCFF363VZN/@@download/ENCFF363VZN.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF577AYR bigWig fold change over control ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF023YTY, ENCFF643YHU 405379388 ENCODE Processing Pipeline a377c5407f0b9da6063bdb6420dd9307 https://www.encodeproject.org/files/ENCFF577AYR/@@download/ENCFF577AYR.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF554DCT bigWig signal p-value ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF023YTY, ENCFF643YHU 444670440 ENCODE Processing Pipeline cbbc72b578a3ff5381afbacba34f77b6 https://www.encodeproject.org/files/ENCFF554DCT/@@download/ENCFF554DCT.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF581DAA bigWig signal p-value ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF023YTY, ENCFF643YHU, ENCFF924APX 446026715 ENCODE Processing Pipeline f2861d1d2df4aef0ce4bbbf7c7b2fbb5 https://www.encodeproject.org/files/ENCFF581DAA/@@download/ENCFF581DAA.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF020KDS bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF023YTY, ENCFF924APX 5933196 ENCODE Processing Pipeline 1d1443d84b49277161cee74feac704b4 https://www.encodeproject.org/files/ENCFF020KDS/@@download/ENCFF020KDS.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF023DPP bigBed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF404HWH 13018670 ENCODE Processing Pipeline 421c304112f2bb415bd5a69526fb0505 https://www.encodeproject.org/files/ENCFF023DPP/@@download/ENCFF023DPP.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF801SSE bed narrowPeak optimal idr thresholded peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF020KDS, ENCFF404HWH, ENCFF656YTE 277247 ENCODE Processing Pipeline 92c927c79f7dc604fbc837c438ff2454 https://www.encodeproject.org/files/ENCFF801SSE/@@download/ENCFF801SSE.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF167TBW bigBed narrowPeak optimal idr thresholded peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1, 2 ENCFF801SSE 571972 ENCODE Processing Pipeline 75c97252042dee5a1aeaa3c0eb48fd7f https://www.encodeproject.org/files/ENCFF167TBW/@@download/ENCFF167TBW.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF037UVY fastq reads ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF060EBL 3782742962 Michael Snyder, Stanford 5567a4e0b420505a4fe400882778d5fb SRA:SRR5112359 https://www.encodeproject.org/files/ENCFF037UVY/@@download/ENCFF037UVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF405YUH fastq reads ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF112NVD 3375244309 Michael Snyder, Stanford 5c26100c2f169fc516de5bad052979c2 SRA:SRR5112360 https://www.encodeproject.org/files/ENCFF405YUH/@@download/ENCFF405YUH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF112NVD fastq reads ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF405YUH 3404403223 Michael Snyder, Stanford d6f025c8ed9ddf2a467e9e605b2120df SRA:SRR5112360 https://www.encodeproject.org/files/ENCFF112NVD/@@download/ENCFF112NVD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF060EBL fastq reads ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF037UVY 3751466740 Michael Snyder, Stanford bfa4ff1b6b213b5c17474da9ccaad715 SRA:SRR5112359 https://www.encodeproject.org/files/ENCFF060EBL/@@download/ENCFF060EBL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF018NVG bam unfiltered alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF112NVD, ENCFF405YUH, ENCFF643CGH 6690784249 ENCODE Processing Pipeline 6ca2c18a1b5e3567262e5b170d1a899c https://www.encodeproject.org/files/ENCFF018NVG/@@download/ENCFF018NVG.bam GRCh38 released ENCFF938DTV bam unfiltered alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF037UVY, ENCFF060EBL, ENCFF643CGH 7313192420 ENCODE Processing Pipeline 9a5e0f048dcd906a335d80d0f16706a6 https://www.encodeproject.org/files/ENCFF938DTV/@@download/ENCFF938DTV.bam GRCh38 released ENCFF821TRO bam unfiltered alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF112NVD, ENCFF405YUH, ENCFF807MUK 6679702083 ENCODE Processing Pipeline bf5f80751c9c5c0657a72972f1d1f4fa https://www.encodeproject.org/files/ENCFF821TRO/@@download/ENCFF821TRO.bam hg19 released ENCFF010KSK bam unfiltered alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF037UVY, ENCFF060EBL, ENCFF807MUK 7302992321 ENCODE Processing Pipeline d5b42f0fdb1c7627b97d5f9d0ddfb114 https://www.encodeproject.org/files/ENCFF010KSK/@@download/ENCFF010KSK.bam hg19 released ENCFF695AWZ bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF037UVY, ENCFF060EBL, ENCFF643CGH 6050735920 ENCODE Processing Pipeline 4e3ba088356c70a9d893fc6f7a345eef https://www.encodeproject.org/files/ENCFF695AWZ/@@download/ENCFF695AWZ.bam GRCh38 released ENCFF679HDV bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF112NVD, ENCFF405YUH, ENCFF807MUK 5600559970 ENCODE Processing Pipeline b6ef844d3e30a87fd1f858b03bf2bcfd https://www.encodeproject.org/files/ENCFF679HDV/@@download/ENCFF679HDV.bam hg19 released ENCFF557JBT bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF112NVD, ENCFF405YUH, ENCFF643CGH 5610082999 ENCODE Processing Pipeline 3d0daa54e8caaf64dbb25c2bfc9ca765 https://www.encodeproject.org/files/ENCFF557JBT/@@download/ENCFF557JBT.bam GRCh38 released ENCFF545ZPB bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF037UVY, ENCFF060EBL, ENCFF807MUK 6041309596 ENCODE Processing Pipeline ff7d8107dc55923271ce12e97be1b42e https://www.encodeproject.org/files/ENCFF545ZPB/@@download/ENCFF545ZPB.bam hg19 released ENCFF116JKU bigWig signal p-value ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF291AFY, ENCFF695AWZ 1175810401 ENCODE Processing Pipeline d3cbeb8794b8b3aeeebe8b87e180cd90 https://www.encodeproject.org/files/ENCFF116JKU/@@download/ENCFF116JKU.bigWig GRCh38 released ENCFF745VWN bigWig signal p-value ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF426RDP, ENCFF557JBT 1221420729 ENCODE Processing Pipeline 2795f0907e5070a01a5a38f8ddb3f12a https://www.encodeproject.org/files/ENCFF745VWN/@@download/ENCFF745VWN.bigWig GRCh38 released ENCFF951VKF bigWig fold change over control ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF426RDP, ENCFF557JBT 1204907177 ENCODE Processing Pipeline 08eb70528eec19988ed951e14d7ca39f https://www.encodeproject.org/files/ENCFF951VKF/@@download/ENCFF951VKF.bigWig GRCh38 released ENCFF897NGS bigWig signal p-value ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF557JBT, ENCFF695AWZ 1840495844 ENCODE Processing Pipeline 0d6135ced5e3dc6ec47fb335ba06fb88 https://www.encodeproject.org/files/ENCFF897NGS/@@download/ENCFF897NGS.bigWig GRCh38 released ENCFF129DMX bigWig fold change over control ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF291AFY, ENCFF695AWZ 1261816164 ENCODE Processing Pipeline fa6ac8103ef45adc85a08186da6bf1d4 https://www.encodeproject.org/files/ENCFF129DMX/@@download/ENCFF129DMX.bigWig GRCh38 released ENCFF284DOO bigWig fold change over control ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF557JBT, ENCFF695AWZ 2167699541 ENCODE Processing Pipeline 892d004897f63a21a25d009b49d4a68f https://www.encodeproject.org/files/ENCFF284DOO/@@download/ENCFF284DOO.bigWig GRCh38 released ENCFF885PYO bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF426RDP, ENCFF557JBT 6508841 ENCODE Processing Pipeline e687c8cc476e1241d6f7a856875b20e8 https://www.encodeproject.org/files/ENCFF885PYO/@@download/ENCFF885PYO.bed.gz GRCh38 released ENCFF277YIC bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF557JBT, ENCFF695AWZ 7211359 ENCODE Processing Pipeline 4552a5141aadda0b79bf908709df387c https://www.encodeproject.org/files/ENCFF277YIC/@@download/ENCFF277YIC.bed.gz GRCh38 released ENCFF453HAG bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF291AFY, ENCFF695AWZ 6705793 ENCODE Processing Pipeline b8ebfc9f58850b80634cc92b72c0359d https://www.encodeproject.org/files/ENCFF453HAG/@@download/ENCFF453HAG.bed.gz GRCh38 released ENCFF781RQM bigBed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF885PYO 11240305 ENCODE Processing Pipeline 5f0a8d3de44cb14f107613ba331d9838 https://www.encodeproject.org/files/ENCFF781RQM/@@download/ENCFF781RQM.bigBed GRCh38 released ENCFF642IKO bigBed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF453HAG 13485659 ENCODE Processing Pipeline 06848843e0b89da000964dff4d3b2ee8 https://www.encodeproject.org/files/ENCFF642IKO/@@download/ENCFF642IKO.bigBed GRCh38 released ENCFF263OKD bigBed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF277YIC 13532441 ENCODE Processing Pipeline 7fe146bc3dad7ad21497a5df912ccbc8 https://www.encodeproject.org/files/ENCFF263OKD/@@download/ENCFF263OKD.bigBed GRCh38 released ENCFF795JGA bed narrowPeak conservative idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF277YIC, ENCFF419RSJ, ENCFF453HAG, ENCFF885PYO 416913 ENCODE Processing Pipeline de5ae0d9e5b82299ec032c18dbfb28f8 https://www.encodeproject.org/files/ENCFF795JGA/@@download/ENCFF795JGA.bed.gz GRCh38 released ENCFF905RBA bigBed narrowPeak conservative idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF795JGA 781419 ENCODE Processing Pipeline 2355373e080320eb0eb7bdc4c321071c https://www.encodeproject.org/files/ENCFF905RBA/@@download/ENCFF905RBA.bigBed GRCh38 released ENCFF105PFS bed narrowPeak optimal idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF277YIC, ENCFF419RSJ, ENCFF453HAG, ENCFF885PYO 557866 ENCODE Processing Pipeline 8b7de2f77b11b242028f6efd53c01463 https://www.encodeproject.org/files/ENCFF105PFS/@@download/ENCFF105PFS.bed.gz GRCh38 released ENCFF087LLP bigBed narrowPeak optimal idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF105PFS 971394 ENCODE Processing Pipeline 1c208b2158471b5fec2edde7e04b7bdc https://www.encodeproject.org/files/ENCFF087LLP/@@download/ENCFF087LLP.bigBed GRCh38 released ENCFF374BSX bigWig signal p-value ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF679HDV 1215931358 ENCODE Processing Pipeline f6a26dfe9d93a482a960ed76b28e5e52 https://www.encodeproject.org/files/ENCFF374BSX/@@download/ENCFF374BSX.bigWig hg19 released ENCFF909XHD bigWig signal p-value ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF545ZPB 966817757 ENCODE Processing Pipeline 932842ab84dbc2415e5f1f10ac3d4d3b https://www.encodeproject.org/files/ENCFF909XHD/@@download/ENCFF909XHD.bigWig hg19 released ENCFF187RXS bigWig signal p-value ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF545ZPB, ENCFF583FAG, ENCFF679HDV 1826024017 ENCODE Processing Pipeline 001a4370e79766c087773217660bec2c https://www.encodeproject.org/files/ENCFF187RXS/@@download/ENCFF187RXS.bigWig hg19 released ENCFF372WWS bigWig fold change over control ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF679HDV 1202208903 ENCODE Processing Pipeline 4a696f5b4390a531157060416aff3f64 https://www.encodeproject.org/files/ENCFF372WWS/@@download/ENCFF372WWS.bigWig hg19 released ENCFF927LYR bigWig fold change over control ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF545ZPB 1264440837 ENCODE Processing Pipeline e9e16b843b00381cd14731d0b87c0799 https://www.encodeproject.org/files/ENCFF927LYR/@@download/ENCFF927LYR.bigWig hg19 released ENCFF913YWW bigWig fold change over control ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF545ZPB, ENCFF583FAG, ENCFF679HDV 2196700143 ENCODE Processing Pipeline 468c7a07b1f24dc484b820c1797e1675 https://www.encodeproject.org/files/ENCFF913YWW/@@download/ENCFF913YWW.bigWig hg19 released ENCFF424JFZ bigBed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF117BUH 13464725 ENCODE Processing Pipeline ad446ac6adc4facaf3558edb52a93a10 https://www.encodeproject.org/files/ENCFF424JFZ/@@download/ENCFF424JFZ.bigBed hg19 released ENCFF422JJD bigBed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF648CSH 11221426 ENCODE Processing Pipeline 80cd0b08574037bff29026a07582898e https://www.encodeproject.org/files/ENCFF422JJD/@@download/ENCFF422JJD.bigBed hg19 released ENCFF117BUH bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF545ZPB 6693164 ENCODE Processing Pipeline 1733f5034e78fa24ebe8b64d686bc922 https://www.encodeproject.org/files/ENCFF117BUH/@@download/ENCFF117BUH.bed.gz hg19 released ENCFF695HJW bed narrowPeak conservative idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF117BUH, ENCFF648CSH, ENCFF687IUI 419762 ENCODE Processing Pipeline 8238b6c596e3776f9f63703a19f714a4 https://www.encodeproject.org/files/ENCFF695HJW/@@download/ENCFF695HJW.bed.gz hg19 released ENCFF648CSH bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF679HDV 6499228 ENCODE Processing Pipeline 791ecf1ff8b011731451176d67abdd5c https://www.encodeproject.org/files/ENCFF648CSH/@@download/ENCFF648CSH.bed.gz hg19 released ENCFF687IUI bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF545ZPB, ENCFF583FAG, ENCFF679HDV 7217279 ENCODE Processing Pipeline b30856ee0299b67c71ef5225cfe21b92 https://www.encodeproject.org/files/ENCFF687IUI/@@download/ENCFF687IUI.bed.gz hg19 released ENCFF922GXT bed narrowPeak optimal idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF117BUH, ENCFF648CSH, ENCFF687IUI 555528 ENCODE Processing Pipeline dcc62a783ecd9b7707f05d42b9c52d1a https://www.encodeproject.org/files/ENCFF922GXT/@@download/ENCFF922GXT.bed.gz hg19 released ENCFF520EMC bigBed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF687IUI 13532611 ENCODE Processing Pipeline 06bc6835356f832ecc7b8e8dbd548e70 https://www.encodeproject.org/files/ENCFF520EMC/@@download/ENCFF520EMC.bigBed hg19 released ENCFF541KGI bigBed narrowPeak conservative idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF695HJW 782854 ENCODE Processing Pipeline fb09615f6b98b8551f94ba1595c091da https://www.encodeproject.org/files/ENCFF541KGI/@@download/ENCFF541KGI.bigBed hg19 released ENCFF647EAT bigBed narrowPeak optimal idr thresholded peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF922GXT 965740 ENCODE Processing Pipeline 78469d7208a7546bf72f58cc3f981fd6 https://www.encodeproject.org/files/ENCFF647EAT/@@download/ENCFF647EAT.bigBed hg19 released ENCFF495FWL bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF807MUK 4443178143 ENCODE Processing Pipeline 7e02c963a3dae50a5ba1c585f98597db https://www.encodeproject.org/files/ENCFF495FWL/@@download/ENCFF495FWL.bam hg19 released borderline replicate concordance ENCFF104XBJ bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF668ZNC, ENCFF807MUK 4676717266 ENCODE Processing Pipeline b1f7d0bf6fb047622e307269fefdb563 https://www.encodeproject.org/files/ENCFF104XBJ/@@download/ENCFF104XBJ.bam hg19 released borderline replicate concordance ENCFF365NAQ fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 2 ENCFF668ZNC 2098533777 Michael Snyder, Stanford a1caebb237a1ccf003063ef0f6c9d4bf SRA:SRR6214229 https://www.encodeproject.org/files/ENCFF365NAQ/@@download/ENCFF365NAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released borderline replicate concordance ENCFF668ZNC fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 1 ENCFF365NAQ 2096105308 Michael Snyder, Stanford 07ba5bee3ae9c0710e86bff39facc65b SRA:SRR6214229 https://www.encodeproject.org/files/ENCFF668ZNC/@@download/ENCFF668ZNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released borderline replicate concordance ENCFF490CJS fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 2 ENCFF086HHP 1984258621 Michael Snyder, Stanford 5965672ad8dd104f507cf5b5671aef0a SRA:SRR6214230 https://www.encodeproject.org/files/ENCFF490CJS/@@download/ENCFF490CJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released borderline replicate concordance ENCFF086HHP fastq reads ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 1 ENCFF490CJS 1973592913 Michael Snyder, Stanford b0e080a47277eb575b292ba58bf1d669 SRA:SRR6214230 https://www.encodeproject.org/files/ENCFF086HHP/@@download/ENCFF086HHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released borderline replicate concordance ENCFF055QIN bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF807MUK 3750892542 ENCODE Processing Pipeline 038a84286422c3694c71574cf149a1bb https://www.encodeproject.org/files/ENCFF055QIN/@@download/ENCFF055QIN.bam hg19 released borderline replicate concordance ENCFF332QUM bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF668ZNC, ENCFF807MUK 3994488625 ENCODE Processing Pipeline a45de89ae965fe7e804fe7b618cb5ac1 https://www.encodeproject.org/files/ENCFF332QUM/@@download/ENCFF332QUM.bam hg19 released borderline replicate concordance ENCFF412TDM bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 1111985929 ENCODE Processing Pipeline 2ef75584bdb875fafad87a73bc76fbfd https://www.encodeproject.org/files/ENCFF412TDM/@@download/ENCFF412TDM.bigWig hg19 released borderline replicate concordance ENCFF483GKC bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 967065587 ENCODE Processing Pipeline 4a48d21aa7fc9457c9dd89754bd2a05c https://www.encodeproject.org/files/ENCFF483GKC/@@download/ENCFF483GKC.bigWig hg19 released borderline replicate concordance ENCFF098KGG bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF055QIN, ENCFF287SKW, ENCFF332QUM, ENCFF941TZZ 1997290832 ENCODE Processing Pipeline 90febea79e9e78c3e45e23c42dc1d8ae https://www.encodeproject.org/files/ENCFF098KGG/@@download/ENCFF098KGG.bigWig hg19 released borderline replicate concordance ENCFF047GJD bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 1049210957 ENCODE Processing Pipeline bb36bc758f567ed8bcd8e7cf2d6a9622 https://www.encodeproject.org/files/ENCFF047GJD/@@download/ENCFF047GJD.bigWig hg19 released borderline replicate concordance ENCFF505YSP bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 1103176913 ENCODE Processing Pipeline 792f1847d9b6d13281cfa92fbba44fdd https://www.encodeproject.org/files/ENCFF505YSP/@@download/ENCFF505YSP.bigWig hg19 released borderline replicate concordance ENCFF975GNN bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF055QIN, ENCFF287SKW, ENCFF332QUM, ENCFF941TZZ 2027810279 ENCODE Processing Pipeline 53c5c3616866e88855222272e5d4a967 https://www.encodeproject.org/files/ENCFF975GNN/@@download/ENCFF975GNN.bigWig hg19 released borderline replicate concordance ENCFF341MQJ bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 5851393 ENCODE Processing Pipeline 7c02d5350df7edb02091e78732cfeb5e https://www.encodeproject.org/files/ENCFF341MQJ/@@download/ENCFF341MQJ.bed.gz hg19 released borderline replicate concordance ENCFF558RIA bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF341MQJ 11296215 ENCODE Processing Pipeline 17ef9c206f72350e0b8c3de12414eb62 https://www.encodeproject.org/files/ENCFF558RIA/@@download/ENCFF558RIA.bigBed hg19 released borderline replicate concordance ENCFF863BUI bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 5827292 ENCODE Processing Pipeline 54f1ee4a426541aff84a63284c6c48d7 https://www.encodeproject.org/files/ENCFF863BUI/@@download/ENCFF863BUI.bed.gz hg19 released borderline replicate concordance ENCFF877SBO bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF055QIN, ENCFF287SKW, ENCFF332QUM, ENCFF941TZZ 6968367 ENCODE Processing Pipeline 12a199f45a670e4a144ce6a85d2620ed https://www.encodeproject.org/files/ENCFF877SBO/@@download/ENCFF877SBO.bed.gz hg19 released borderline replicate concordance ENCFF228RXY bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF863BUI 11426943 ENCODE Processing Pipeline 4ae66567de68d711aae7b6f43473886b https://www.encodeproject.org/files/ENCFF228RXY/@@download/ENCFF228RXY.bigBed hg19 released borderline replicate concordance ENCFF127WGD bed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF341MQJ, ENCFF863BUI, ENCFF877SBO 30866 ENCODE Processing Pipeline b92ead80195e6c5e370749dccfe4f410 https://www.encodeproject.org/files/ENCFF127WGD/@@download/ENCFF127WGD.bed.gz hg19 released borderline replicate concordance ENCFF882DIL bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF877SBO 11210813 ENCODE Processing Pipeline e5de340e5850ecfddf4bb3ba6b3ddb59 https://www.encodeproject.org/files/ENCFF882DIL/@@download/ENCFF882DIL.bigBed hg19 released borderline replicate concordance ENCFF681WHN bigBed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF127WGD 112250 ENCODE Processing Pipeline d3e4e5728d949ae9040d91002ec31849 https://www.encodeproject.org/files/ENCFF681WHN/@@download/ENCFF681WHN.bigBed hg19 released borderline replicate concordance ENCFF733VCH bigBed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF100ERQ 142452 ENCODE Processing Pipeline ef2322f498faf22ed7459edab3e7ac8c https://www.encodeproject.org/files/ENCFF733VCH/@@download/ENCFF733VCH.bigBed hg19 released borderline replicate concordance ENCFF100ERQ bed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF341MQJ, ENCFF863BUI, ENCFF877SBO 50640 ENCODE Processing Pipeline bfa6493ee2202e459c7ae5dd5a054be9 https://www.encodeproject.org/files/ENCFF100ERQ/@@download/ENCFF100ERQ.bed.gz hg19 released borderline replicate concordance ENCFF380LIA bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF643CGH, ENCFF668ZNC 4685216115 ENCODE Processing Pipeline 97f707711ce38eedae6811e562a569df https://www.encodeproject.org/files/ENCFF380LIA/@@download/ENCFF380LIA.bam GRCh38 released borderline replicate concordance ENCFF465OFG bam unfiltered alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF643CGH 4451778542 ENCODE Processing Pipeline 1c951d07b3a7175550c1f03f040061fa https://www.encodeproject.org/files/ENCFF465OFG/@@download/ENCFF465OFG.bam GRCh38 released borderline replicate concordance ENCFF345FES bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF643CGH, ENCFF668ZNC 4004230712 ENCODE Processing Pipeline b4171cdf64b7bb2c90d9638ed99378a1 https://www.encodeproject.org/files/ENCFF345FES/@@download/ENCFF345FES.bam GRCh38 released borderline replicate concordance ENCFF988CYS bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF643CGH 3761228099 ENCODE Processing Pipeline 42ab591da3fe1e4a8f11cb3349497c73 https://www.encodeproject.org/files/ENCFF988CYS/@@download/ENCFF988CYS.bam GRCh38 released borderline replicate concordance ENCFF940THU bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF879YMO, ENCFF988CYS 1123635899 ENCODE Processing Pipeline e6ba37ffe4d0102de7a638c375537418 https://www.encodeproject.org/files/ENCFF940THU/@@download/ENCFF940THU.bigWig GRCh38 released borderline replicate concordance ENCFF060BEV bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF345FES, ENCFF574BGV 1066425142 ENCODE Processing Pipeline 0ba07ad4497dbf360e520e217d3e3c64 https://www.encodeproject.org/files/ENCFF060BEV/@@download/ENCFF060BEV.bigWig GRCh38 released borderline replicate concordance ENCFF105OXO bigWig signal p-value ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF345FES, ENCFF574BGV, ENCFF879YMO, ENCFF988CYS 1720941423 ENCODE Processing Pipeline 9f4ca54f714c4d17b6bd62b01a325604 https://www.encodeproject.org/files/ENCFF105OXO/@@download/ENCFF105OXO.bigWig GRCh38 released borderline replicate concordance ENCFF691JLK bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF879YMO, ENCFF988CYS 1050530793 ENCODE Processing Pipeline 96abfac040d3c094a4edb95fc2720275 https://www.encodeproject.org/files/ENCFF691JLK/@@download/ENCFF691JLK.bigWig GRCh38 released borderline replicate concordance ENCFF228DUF bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF345FES, ENCFF574BGV 1088066982 ENCODE Processing Pipeline e09c16ece799a954fbe357e0604eb017 https://www.encodeproject.org/files/ENCFF228DUF/@@download/ENCFF228DUF.bigWig GRCh38 released borderline replicate concordance ENCFF398JJK bigWig fold change over control ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF345FES, ENCFF574BGV, ENCFF879YMO, ENCFF988CYS 2086832481 ENCODE Processing Pipeline 5c098164dc325110765dea4d7c177a3b https://www.encodeproject.org/files/ENCFF398JJK/@@download/ENCFF398JJK.bigWig GRCh38 released borderline replicate concordance ENCFF642MMV bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF345FES, ENCFF574BGV, ENCFF879YMO, ENCFF988CYS 6899575 ENCODE Processing Pipeline 370165bd6bb3b072f871f9af4985e51c https://www.encodeproject.org/files/ENCFF642MMV/@@download/ENCFF642MMV.bed.gz GRCh38 released borderline replicate concordance ENCFF305OOS bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF642MMV 11217392 ENCODE Processing Pipeline c4db9927e439b815c3f6e4989c78bb4f https://www.encodeproject.org/files/ENCFF305OOS/@@download/ENCFF305OOS.bigBed GRCh38 released borderline replicate concordance ENCFF486ERR bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF561KXA 11287762 ENCODE Processing Pipeline a5ce9a89d1786133b73d4b80eb73b767 https://www.encodeproject.org/files/ENCFF486ERR/@@download/ENCFF486ERR.bigBed GRCh38 released borderline replicate concordance ENCFF034IME bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF345FES, ENCFF574BGV 5644244 ENCODE Processing Pipeline 3470e96d35706521fa7697f6bfe871d1 https://www.encodeproject.org/files/ENCFF034IME/@@download/ENCFF034IME.bed.gz GRCh38 released borderline replicate concordance ENCFF561KXA bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF879YMO, ENCFF988CYS 5629427 ENCODE Processing Pipeline 442d7b9770353a9647c73812c3be4cf7 https://www.encodeproject.org/files/ENCFF561KXA/@@download/ENCFF561KXA.bed.gz GRCh38 released borderline replicate concordance ENCFF072FTP bigBed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF034IME 11408067 ENCODE Processing Pipeline f47fcfe690ad66021900d9e16c6d60cf https://www.encodeproject.org/files/ENCFF072FTP/@@download/ENCFF072FTP.bigBed GRCh38 released borderline replicate concordance ENCFF207EGF bed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF034IME, ENCFF419RSJ, ENCFF561KXA, ENCFF642MMV 31600 ENCODE Processing Pipeline e6338ba34c54d67df159a8f17f224de1 https://www.encodeproject.org/files/ENCFF207EGF/@@download/ENCFF207EGF.bed.gz GRCh38 released borderline replicate concordance ENCFF495ISP bigBed narrowPeak conservative idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF207EGF 116490 ENCODE Processing Pipeline c1be7d312334f035120363435a4dd541 https://www.encodeproject.org/files/ENCFF495ISP/@@download/ENCFF495ISP.bigBed GRCh38 released borderline replicate concordance ENCFF843HDK bed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF034IME, ENCFF419RSJ, ENCFF561KXA, ENCFF642MMV 53380 ENCODE Processing Pipeline 57fb1434dc24600ea5128473a552836f https://www.encodeproject.org/files/ENCFF843HDK/@@download/ENCFF843HDK.bed.gz GRCh38 released borderline replicate concordance ENCFF068RIG bigBed narrowPeak optimal idr thresholded peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF843HDK 150409 ENCODE Processing Pipeline b7d5e612755df24776fc67c3e939cffa https://www.encodeproject.org/files/ENCFF068RIG/@@download/ENCFF068RIG.bigBed GRCh38 released borderline replicate concordance ENCFF987HMB bam unfiltered alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF126MZP, ENCFF553GOC, ENCFF807MUK 4632455386 ENCODE Processing Pipeline 79a7fecfcce6046531ac11ed9e717b96 https://www.encodeproject.org/files/ENCFF987HMB/@@download/ENCFF987HMB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF260TZY bam unfiltered alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF306GVI, ENCFF436CBC, ENCFF807MUK 5888202936 ENCODE Processing Pipeline f355e5cc38e99635582d1fe4918ce598 https://www.encodeproject.org/files/ENCFF260TZY/@@download/ENCFF260TZY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF436CBC fastq reads ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF306GVI 2708538834 Michael Snyder, Stanford 3d9e38717e3225dc296dfeb4d5d8945a SRA:SRR5112347 https://www.encodeproject.org/files/ENCFF436CBC/@@download/ENCFF436CBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF126MZP fastq reads ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF553GOC 2120559213 Michael Snyder, Stanford 3e90cb65b6e6794990e58c5f8bea95f7 SRA:SRR5112348 https://www.encodeproject.org/files/ENCFF126MZP/@@download/ENCFF126MZP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF306GVI fastq reads ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF436CBC 2769004405 Michael Snyder, Stanford 128dd0c060d966dd032f235dfa84ee84 SRA:SRR5112347 https://www.encodeproject.org/files/ENCFF306GVI/@@download/ENCFF306GVI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF553GOC fastq reads ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF126MZP 2172004465 Michael Snyder, Stanford 3e79bb7eb4aa8316b75000c575d0a73d SRA:SRR5112348 https://www.encodeproject.org/files/ENCFF553GOC/@@download/ENCFF553GOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF469DEJ bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF126MZP, ENCFF553GOC, ENCFF807MUK 3728138404 ENCODE Processing Pipeline fcc4848dd0fc90c7e9a0f113bca4b3d2 https://www.encodeproject.org/files/ENCFF469DEJ/@@download/ENCFF469DEJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF745TZN bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF306GVI, ENCFF436CBC, ENCFF807MUK 5027181275 ENCODE Processing Pipeline 82072679efbbcb168ce196bc5168019f https://www.encodeproject.org/files/ENCFF745TZN/@@download/ENCFF745TZN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF892BSN bigWig signal p-value ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF469DEJ, ENCFF581ZJL 1206515723 ENCODE Processing Pipeline 52c5f5ad4346487f18f2aa23968e5606 https://www.encodeproject.org/files/ENCFF892BSN/@@download/ENCFF892BSN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF868FJR bigWig signal p-value ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF745TZN 1213155478 ENCODE Processing Pipeline 75a0d8d7f428a446099fb776ce247440 https://www.encodeproject.org/files/ENCFF868FJR/@@download/ENCFF868FJR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF353ZYC bigWig signal p-value ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF469DEJ, ENCFF581ZJL, ENCFF745TZN 1827436665 ENCODE Processing Pipeline fb974e885f993640c43696f614e1199c https://www.encodeproject.org/files/ENCFF353ZYC/@@download/ENCFF353ZYC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF564CWZ bigWig fold change over control ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF469DEJ, ENCFF581ZJL 1117938168 ENCODE Processing Pipeline bfbd51cf62aec0d9af2871c26a2af9d9 https://www.encodeproject.org/files/ENCFF564CWZ/@@download/ENCFF564CWZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF750ISQ bigWig fold change over control ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF745TZN 1255026581 ENCODE Processing Pipeline ae3a4e81972d94455be5337ce0cbc570 https://www.encodeproject.org/files/ENCFF750ISQ/@@download/ENCFF750ISQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF820AVX bigWig fold change over control ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF469DEJ, ENCFF581ZJL, ENCFF745TZN 2099105096 ENCODE Processing Pipeline bf0318bff573cee459d1825c5b739563 https://www.encodeproject.org/files/ENCFF820AVX/@@download/ENCFF820AVX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF958LLL bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF469DEJ, ENCFF581ZJL 6673322 ENCODE Processing Pipeline 975a07ecd07b60af1afa02f8d730bce8 https://www.encodeproject.org/files/ENCFF958LLL/@@download/ENCFF958LLL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF904JFG bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF745TZN 6852614 ENCODE Processing Pipeline 500d04a0c0adb72a12ce4c535498d6d5 https://www.encodeproject.org/files/ENCFF904JFG/@@download/ENCFF904JFG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF318PDI bigBed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF940ADN 12945168 ENCODE Processing Pipeline 21f6b982d75c944a4a094e5076ed63b8 https://www.encodeproject.org/files/ENCFF318PDI/@@download/ENCFF318PDI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF997JHM bed narrowPeak conservative idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF904JFG, ENCFF940ADN, ENCFF958LLL 23618 ENCODE Processing Pipeline ba64babb2e03f2acfa71ad96315d06f5 https://www.encodeproject.org/files/ENCFF997JHM/@@download/ENCFF997JHM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF940ADN bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF469DEJ, ENCFF581ZJL, ENCFF745TZN 7229913 ENCODE Processing Pipeline 7d69edafb10a4b1d2e93dfe0429cfdff https://www.encodeproject.org/files/ENCFF940ADN/@@download/ENCFF940ADN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF213GDC bigBed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF958LLL 13212561 ENCODE Processing Pipeline 8025a42eeb5eee229b55656dd65ea092 https://www.encodeproject.org/files/ENCFF213GDC/@@download/ENCFF213GDC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF156SUB bigBed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF904JFG 13072097 ENCODE Processing Pipeline 4551829da4f8bce5c63df3bf0fa49a81 https://www.encodeproject.org/files/ENCFF156SUB/@@download/ENCFF156SUB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF167QKF bigBed narrowPeak optimal idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF034PQD 178698 ENCODE Processing Pipeline 8f103151c1ba3e09844125419ffe10f2 https://www.encodeproject.org/files/ENCFF167QKF/@@download/ENCFF167QKF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF712YDU bigBed narrowPeak conservative idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF997JHM 102968 ENCODE Processing Pipeline c1bfce90d322390a519591f66740625d https://www.encodeproject.org/files/ENCFF712YDU/@@download/ENCFF712YDU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF034PQD bed narrowPeak optimal idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF904JFG, ENCFF940ADN, ENCFF958LLL 70153 ENCODE Processing Pipeline 79eeb002c4537a9f9bcd3ee531b71688 https://www.encodeproject.org/files/ENCFF034PQD/@@download/ENCFF034PQD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF022XSP bam unfiltered alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF126MZP, ENCFF553GOC, ENCFF643CGH 4635686390 ENCODE Processing Pipeline 227e72dba3a1b92d3e5764048f23aa48 https://www.encodeproject.org/files/ENCFF022XSP/@@download/ENCFF022XSP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF273UPH bam unfiltered alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF306GVI, ENCFF436CBC, ENCFF643CGH 5893755335 ENCODE Processing Pipeline 47e319fb3cb590e80d4938b3a4810900 https://www.encodeproject.org/files/ENCFF273UPH/@@download/ENCFF273UPH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF573OTF bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF126MZP, ENCFF553GOC, ENCFF643CGH 3729991042 ENCODE Processing Pipeline cb1d198c60137f2504bac43951158f02 https://www.encodeproject.org/files/ENCFF573OTF/@@download/ENCFF573OTF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF378UVV bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF306GVI, ENCFF436CBC, ENCFF643CGH 5030046271 ENCODE Processing Pipeline dfbf508bae9c2bfb2d316a2812fc2e45 https://www.encodeproject.org/files/ENCFF378UVV/@@download/ENCFF378UVV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF088OIH bigWig signal p-value ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF573OTF, ENCFF910IKB 1087360940 ENCODE Processing Pipeline 05a3dff0cab67efa480c0503cce2f6fc https://www.encodeproject.org/files/ENCFF088OIH/@@download/ENCFF088OIH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF982YJA bigWig signal p-value ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF378UVV 1258747413 ENCODE Processing Pipeline 5d7f3f76d90768d9cc5863c390121832 https://www.encodeproject.org/files/ENCFF982YJA/@@download/ENCFF982YJA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF935BWQ bigWig signal p-value ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF378UVV, ENCFF573OTF, ENCFF910IKB 1755862040 ENCODE Processing Pipeline e0117f28f652e10af138149c1a4ed6d9 https://www.encodeproject.org/files/ENCFF935BWQ/@@download/ENCFF935BWQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF469UWR bigWig fold change over control ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF573OTF, ENCFF910IKB 1100839992 ENCODE Processing Pipeline 7e6ffd0388c27ab227ef9966a964a25e https://www.encodeproject.org/files/ENCFF469UWR/@@download/ENCFF469UWR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF515GYS bigWig fold change over control ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF378UVV 1246369900 ENCODE Processing Pipeline 985cc1463763deab98aa7644fdbe274b https://www.encodeproject.org/files/ENCFF515GYS/@@download/ENCFF515GYS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF992NLQ bigWig fold change over control ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF378UVV, ENCFF573OTF, ENCFF910IKB 2133937919 ENCODE Processing Pipeline fa2e95a34e0117bb07227e3409090c8a https://www.encodeproject.org/files/ENCFF992NLQ/@@download/ENCFF992NLQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF823TIB bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF573OTF, ENCFF910IKB 6544776 ENCODE Processing Pipeline d1055dad7904b3f75fc7d662f6fb4de7 https://www.encodeproject.org/files/ENCFF823TIB/@@download/ENCFF823TIB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF997WEM bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF378UVV 6752341 ENCODE Processing Pipeline a5294f45391169efc94cd59885e60849 https://www.encodeproject.org/files/ENCFF997WEM/@@download/ENCFF997WEM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF129ADK bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF378UVV, ENCFF573OTF, ENCFF910IKB 7216775 ENCODE Processing Pipeline 9598eed5ee7b6fe4ee2dacfaff9e0e3b https://www.encodeproject.org/files/ENCFF129ADK/@@download/ENCFF129ADK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF915IHL bigBed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF823TIB 13217196 ENCODE Processing Pipeline 34417df72a23128056d3765b145ae96d https://www.encodeproject.org/files/ENCFF915IHL/@@download/ENCFF915IHL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF287HGN bigBed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF997WEM 13080851 ENCODE Processing Pipeline 75eddebefdb7909c650685f41a36fab4 https://www.encodeproject.org/files/ENCFF287HGN/@@download/ENCFF287HGN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF070OQI bigBed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF129ADK 12950836 ENCODE Processing Pipeline cb5cd1e2f2d7df804361e2dc99b105e6 https://www.encodeproject.org/files/ENCFF070OQI/@@download/ENCFF070OQI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF505HOV bed narrowPeak conservative idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF129ADK, ENCFF419RSJ, ENCFF823TIB, ENCFF997WEM 22760 ENCODE Processing Pipeline 2f9670056522d97050504be2a0ce6996 https://www.encodeproject.org/files/ENCFF505HOV/@@download/ENCFF505HOV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF973PUF bigBed narrowPeak conservative idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF505HOV 102422 ENCODE Processing Pipeline d5665bbde9a53dc7f030ccd83d42f0e9 https://www.encodeproject.org/files/ENCFF973PUF/@@download/ENCFF973PUF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF549TVW bed narrowPeak optimal idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF129ADK, ENCFF419RSJ, ENCFF823TIB, ENCFF997WEM 69618 ENCODE Processing Pipeline fbd5755d528bd1922c7187aa896ed42c https://www.encodeproject.org/files/ENCFF549TVW/@@download/ENCFF549TVW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF251CKT bigBed narrowPeak optimal idr thresholded peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF549TVW 179227 ENCODE Processing Pipeline ec304eccd4b655e4f8570b2597068dca https://www.encodeproject.org/files/ENCFF251CKT/@@download/ENCFF251CKT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF143XOC fastq reads ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 2 ENCFF575FWJ 2374501002 Michael Snyder, Stanford 441bbe8316aada3d304916adff0d763e https://www.encodeproject.org/files/ENCFF143XOC/@@download/ENCFF143XOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ archived mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF575FWJ fastq reads ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 1 ENCFF143XOC 2265133566 Michael Snyder, Stanford 3f573e1e2c421123733314009fc36314 https://www.encodeproject.org/files/ENCFF575FWJ/@@download/ENCFF575FWJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ archived mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF718FBA fastq reads ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 1 100 paired-ended 1 ENCFF521KBW 5596386807 Michael Snyder, Stanford 909c8c7ea557c09ee798d0de03f7c2a4 SRA:SRR5112390 https://www.encodeproject.org/files/ENCFF718FBA/@@download/ENCFF718FBA.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF521KBW fastq reads ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 1 100 paired-ended 2 ENCFF718FBA 5947220707 Michael Snyder, Stanford b95e5d8f8c39f0df23626c692d27f6a9 SRA:SRR5112390 https://www.encodeproject.org/files/ENCFF521KBW/@@download/ENCFF521KBW.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF680HKS fastq reads ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 1 ENCFF065YSO 3870818087 Michael Snyder, Stanford fe54bc2bac468ea3e0ceae0820343b44 SRA:SRR5112391 https://www.encodeproject.org/files/ENCFF680HKS/@@download/ENCFF680HKS.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF065YSO fastq reads ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 1 100 paired-ended 2 ENCFF680HKS 4381860076 Michael Snyder, Stanford 1698c940cea8a61fb27f8123255ba68f SRA:SRR5112391 https://www.encodeproject.org/files/ENCFF065YSO/@@download/ENCFF065YSO.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF059JBH bam unfiltered alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 100 ENCFF065YSO, ENCFF643CGH, ENCFF680HKS 7770309358 ENCODE Processing Pipeline 3c6afe8606b0aa90220f2f8b3481037b https://www.encodeproject.org/files/ENCFF059JBH/@@download/ENCFF059JBH.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF058QVM bam unfiltered alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 100 ENCFF521KBW, ENCFF643CGH, ENCFF718FBA 10440353573 ENCODE Processing Pipeline 636b58b2b65275d93b267b4090a0f4be https://www.encodeproject.org/files/ENCFF058QVM/@@download/ENCFF058QVM.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF225IQS bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 100 ENCFF065YSO, ENCFF643CGH, ENCFF680HKS 5739735356 ENCODE Processing Pipeline 702328efedbd5808f72bd0be2a6f7e4c https://www.encodeproject.org/files/ENCFF225IQS/@@download/ENCFF225IQS.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF431WVX bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 100 ENCFF521KBW, ENCFF643CGH, ENCFF718FBA 8309162279 ENCODE Processing Pipeline 9a9cdacac615c9559f8780200efca8db https://www.encodeproject.org/files/ENCFF431WVX/@@download/ENCFF431WVX.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF749HFW bigWig signal p-value ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF225IQS, ENCFF712WXB, ENCFF790TAN 1869012738 ENCODE Processing Pipeline 92ce22e7f71b4d909da85ba76edfc106 https://www.encodeproject.org/files/ENCFF749HFW/@@download/ENCFF749HFW.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF242GZG bigWig signal p-value ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF225IQS, ENCFF431WVX, ENCFF712WXB, ENCFF790TAN 2324115267 ENCODE Processing Pipeline cf6c6fc80c028eb00fc2970d2af73cb4 https://www.encodeproject.org/files/ENCFF242GZG/@@download/ENCFF242GZG.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF475SVI bigWig fold change over control ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF225IQS, ENCFF712WXB, ENCFF790TAN 1991372916 ENCODE Processing Pipeline 647ce568a8bcaa376281ff573c696712 https://www.encodeproject.org/files/ENCFF475SVI/@@download/ENCFF475SVI.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF952KHP bigWig fold change over control ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF431WVX, ENCFF712WXB 2066114540 ENCODE Processing Pipeline 26cdaa3a5c5a51b8d00a7925d0ead828 https://www.encodeproject.org/files/ENCFF952KHP/@@download/ENCFF952KHP.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF948INJ bigWig signal p-value ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF431WVX, ENCFF712WXB 1498762254 ENCODE Processing Pipeline d356f4a3e9f987e27c2bef3f929ee2d8 https://www.encodeproject.org/files/ENCFF948INJ/@@download/ENCFF948INJ.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF691REI bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF225IQS, ENCFF712WXB, ENCFF790TAN 7214076 ENCODE Processing Pipeline aba487b064ca0d42248f8185ff040d18 https://www.encodeproject.org/files/ENCFF691REI/@@download/ENCFF691REI.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF849KQZ bigBed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF691REI 13276138 ENCODE Processing Pipeline 321b7a232b3a5c42c8aaceb820ffbfae https://www.encodeproject.org/files/ENCFF849KQZ/@@download/ENCFF849KQZ.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF697GTL bigWig fold change over control ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF225IQS, ENCFF431WVX, ENCFF712WXB, ENCFF790TAN 4023271218 ENCODE Processing Pipeline a87f8196a38fc1d7345d78507f2cf960 https://www.encodeproject.org/files/ENCFF697GTL/@@download/ENCFF697GTL.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF327LXL bigBed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF552EXM 13065621 ENCODE Processing Pipeline 024ec6fd0ea4ebe41e270f646610b352 https://www.encodeproject.org/files/ENCFF327LXL/@@download/ENCFF327LXL.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF501OLA bigBed narrowPeak conservative idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF771TNK 1605944 ENCODE Processing Pipeline 5a3e012b881e4e52a6afba43ecf4800b https://www.encodeproject.org/files/ENCFF501OLA/@@download/ENCFF501OLA.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF552EXM bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF431WVX, ENCFF712WXB 7272664 ENCODE Processing Pipeline f8e880a523f52386876cff40ca1af644 https://www.encodeproject.org/files/ENCFF552EXM/@@download/ENCFF552EXM.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF446XYW bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF225IQS, ENCFF431WVX, ENCFF712WXB, ENCFF790TAN 7315665 ENCODE Processing Pipeline 0c80bfb3dcca65c9b77c3073f3d48c63 https://www.encodeproject.org/files/ENCFF446XYW/@@download/ENCFF446XYW.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF808LSS bigBed narrowPeak optimal idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF249TYS 1662898 ENCODE Processing Pipeline 57beeb4720165b3ac1ef8a39c01fdd9f https://www.encodeproject.org/files/ENCFF808LSS/@@download/ENCFF808LSS.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF652NMQ bigBed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF446XYW 13225450 ENCODE Processing Pipeline 25cd41a3e38b829b5817a48ac878ce68 https://www.encodeproject.org/files/ENCFF652NMQ/@@download/ENCFF652NMQ.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF771TNK bed narrowPeak conservative idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF446XYW, ENCFF552EXM, ENCFF691REI 881511 ENCODE Processing Pipeline 346d1e87400370765de81d3202d3c139 https://www.encodeproject.org/files/ENCFF771TNK/@@download/ENCFF771TNK.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF249TYS bed narrowPeak optimal idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF446XYW, ENCFF552EXM, ENCFF691REI 912130 ENCODE Processing Pipeline f66a6d097165ef7e610fde9a4db94da0 https://www.encodeproject.org/files/ENCFF249TYS/@@download/ENCFF249TYS.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF503INV bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 100 ENCFF065YSO, ENCFF680HKS, ENCFF807MUK 5734287253 ENCODE Processing Pipeline 33f2dc9637d9686fe7a7883208f58a61 https://www.encodeproject.org/files/ENCFF503INV/@@download/ENCFF503INV.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF717EXO bam unfiltered alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 100 ENCFF065YSO, ENCFF680HKS, ENCFF807MUK 7765911486 ENCODE Processing Pipeline 347eb76c4c409e86c8c07520986a5160 https://www.encodeproject.org/files/ENCFF717EXO/@@download/ENCFF717EXO.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF390AYA bam unfiltered alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 100 ENCFF521KBW, ENCFF718FBA, ENCFF807MUK 10431089706 ENCODE Processing Pipeline 0ec0586985a462a08bfe1b42d3a45fca https://www.encodeproject.org/files/ENCFF390AYA/@@download/ENCFF390AYA.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF919XGC bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 100 ENCFF521KBW, ENCFF718FBA, ENCFF807MUK 8300669941 ENCODE Processing Pipeline 3d66cc6c02e3f2034d890763cffae05b https://www.encodeproject.org/files/ENCFF919XGC/@@download/ENCFF919XGC.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF816UMH bigWig fold change over control ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF503INV, ENCFF834TUP 1994756377 ENCODE Processing Pipeline 2d099f1421b538a0f4810af6e8ae73b6 https://www.encodeproject.org/files/ENCFF816UMH/@@download/ENCFF816UMH.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF472FJF bigWig fold change over control ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF834TUP, ENCFF919XGC 2061373733 ENCODE Processing Pipeline 1cb43bf7d01e527fda92d6f5d4bf0c2c https://www.encodeproject.org/files/ENCFF472FJF/@@download/ENCFF472FJF.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF231SVC bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF503INV, ENCFF834TUP 7236685 ENCODE Processing Pipeline 627b7ac1338041ecaa9fb192e32943f6 https://www.encodeproject.org/files/ENCFF231SVC/@@download/ENCFF231SVC.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF603CDR bigWig signal p-value ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF503INV, ENCFF834TUP 1588671420 ENCODE Processing Pipeline f65b03ea08205c12418bc03557438b07 https://www.encodeproject.org/files/ENCFF603CDR/@@download/ENCFF603CDR.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF118ZSL bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF503INV, ENCFF834TUP, ENCFF919XGC 7343115 ENCODE Processing Pipeline 05b1b1752d0dbbb3cab40f575ad26578 https://www.encodeproject.org/files/ENCFF118ZSL/@@download/ENCFF118ZSL.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF184ZPW bigWig signal p-value ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF503INV, ENCFF834TUP, ENCFF919XGC 2321167039 ENCODE Processing Pipeline cc913947519987a344f49bba55158a57 https://www.encodeproject.org/files/ENCFF184ZPW/@@download/ENCFF184ZPW.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF429LRK bigBed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF118ZSL 13262607 ENCODE Processing Pipeline 5f22ae809fc36ca54cf377081697361a https://www.encodeproject.org/files/ENCFF429LRK/@@download/ENCFF429LRK.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF238CLX bigBed narrowPeak conservative idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF676SJQ 2029145 ENCODE Processing Pipeline a63e72e7c50a3ecfe5f64613ffb95368 https://www.encodeproject.org/files/ENCFF238CLX/@@download/ENCFF238CLX.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF230WZC bigBed narrowPeak optimal idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF225MPC 1688007 ENCODE Processing Pipeline ef854279053e12a6141a769d93cdd7ed https://www.encodeproject.org/files/ENCFF230WZC/@@download/ENCFF230WZC.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF548LQF bigWig signal p-value ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF834TUP, ENCFF919XGC 1496424884 ENCODE Processing Pipeline 9bfcb063c6b65a135e22ba2f6b706004 https://www.encodeproject.org/files/ENCFF548LQF/@@download/ENCFF548LQF.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF117TVE bigBed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF231SVC 13300243 ENCODE Processing Pipeline 3a136ebaf61ab6cbf6e9744d9646124a https://www.encodeproject.org/files/ENCFF117TVE/@@download/ENCFF117TVE.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF750FNO bigWig fold change over control ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF503INV, ENCFF834TUP, ENCFF919XGC 4017941244 ENCODE Processing Pipeline 002223b3bdf9848bed2c95b320a791f3 https://www.encodeproject.org/files/ENCFF750FNO/@@download/ENCFF750FNO.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF549JYE bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF834TUP, ENCFF919XGC 7294885 ENCODE Processing Pipeline c69725cc8f688211356ca018373a030c https://www.encodeproject.org/files/ENCFF549JYE/@@download/ENCFF549JYE.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF216AZW bigBed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF549JYE 13089804 ENCODE Processing Pipeline a5eb65b5553b22534326123ded79dc6d https://www.encodeproject.org/files/ENCFF216AZW/@@download/ENCFF216AZW.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF676SJQ bed narrowPeak conservative idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF118ZSL, ENCFF231SVC, ENCFF549JYE 886667 ENCODE Processing Pipeline c3aae66271a63c709411d06c1b21a7e8 https://www.encodeproject.org/files/ENCFF676SJQ/@@download/ENCFF676SJQ.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF225MPC bed narrowPeak optimal idr thresholded peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF118ZSL, ENCFF231SVC, ENCFF549JYE 928168 ENCODE Processing Pipeline cfb2dc624b924c1459c00c31b9d67fff https://www.encodeproject.org/files/ENCFF225MPC/@@download/ENCFF225MPC.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF799NXM bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF807MUK, ENCFF836FDG 3513174279 ENCODE Processing Pipeline 15e6baf3ad67d3a594d38ebf68233ac5 https://www.encodeproject.org/files/ENCFF799NXM/@@download/ENCFF799NXM.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF907DJE bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF807MUK 3769644152 ENCODE Processing Pipeline 2996ebc828471123a595ccf312fea8f2 https://www.encodeproject.org/files/ENCFF907DJE/@@download/ENCFF907DJE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF836FDG fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF622NJV 1701086995 Michael Snyder, Stanford 3f70a94034b9d27d33236b72f95d804b https://www.encodeproject.org/files/ENCFF836FDG/@@download/ENCFF836FDG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF207YYY fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF252LIU 1758803943 Michael Snyder, Stanford 3f3b5281faf4e6d4909e7430d389695a https://www.encodeproject.org/files/ENCFF207YYY/@@download/ENCFF207YYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF622NJV fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF836FDG 1741156007 Michael Snyder, Stanford e7f88a55b0235d76bb3bae88053695b7 https://www.encodeproject.org/files/ENCFF622NJV/@@download/ENCFF622NJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF252LIU fastq reads ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF207YYY 1717315885 Michael Snyder, Stanford 8bd245c40160057c067c45579ed233d9 https://www.encodeproject.org/files/ENCFF252LIU/@@download/ENCFF252LIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF472GHA bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF807MUK, ENCFF836FDG 2300100963 ENCODE Processing Pipeline 4372c559e308e771f9cefcc3e332bd16 https://www.encodeproject.org/files/ENCFF472GHA/@@download/ENCFF472GHA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF591PLS bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF807MUK 2983724100 ENCODE Processing Pipeline f090ae215e6e41ad3452588cc465b3c6 https://www.encodeproject.org/files/ENCFF591PLS/@@download/ENCFF591PLS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF900IBD bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 1020571577 ENCODE Processing Pipeline 7412f9ed49e6865397316ed7b9e57242 https://www.encodeproject.org/files/ENCFF900IBD/@@download/ENCFF900IBD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF381AAI bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 1000949745 ENCODE Processing Pipeline 035534d95a7360cc67d26c6f1058a6d7 https://www.encodeproject.org/files/ENCFF381AAI/@@download/ENCFF381AAI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF838SEV bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287SKW, ENCFF472GHA, ENCFF591PLS, ENCFF941TZZ 1892813822 ENCODE Processing Pipeline 659eb8187770859b81d5a40d21defa1c https://www.encodeproject.org/files/ENCFF838SEV/@@download/ENCFF838SEV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF125JWM bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 854684640 ENCODE Processing Pipeline 25c528faada19734774ab24213456b70 https://www.encodeproject.org/files/ENCFF125JWM/@@download/ENCFF125JWM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF118TZR bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 964288590 ENCODE Processing Pipeline 62c9fa69ca26ef29cb6848358e09f479 https://www.encodeproject.org/files/ENCFF118TZR/@@download/ENCFF118TZR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF284FKX bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287SKW, ENCFF472GHA, ENCFF591PLS, ENCFF941TZZ 1835649328 ENCODE Processing Pipeline 057690290c9e0f8c8a20d1805352e2bd https://www.encodeproject.org/files/ENCFF284FKX/@@download/ENCFF284FKX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF706SMS bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 6048487 ENCODE Processing Pipeline 120337e4ca0cb8e4c946c6dfb3c7aaf1 https://www.encodeproject.org/files/ENCFF706SMS/@@download/ENCFF706SMS.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF437MOX bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287SKW, ENCFF472GHA, ENCFF591PLS, ENCFF941TZZ 7129787 ENCODE Processing Pipeline 5beac432d0733a9568fc3b6af3d38738 https://www.encodeproject.org/files/ENCFF437MOX/@@download/ENCFF437MOX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF482LKM bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 6444097 ENCODE Processing Pipeline c3ce88fd1d3c7ec3c755107b7a8bac6e https://www.encodeproject.org/files/ENCFF482LKM/@@download/ENCFF482LKM.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF298JWO bigBed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF113VFJ 232806 ENCODE Processing Pipeline 48227a59ae724d271a360bb0fd56c55a https://www.encodeproject.org/files/ENCFF298JWO/@@download/ENCFF298JWO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF907XHS bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF706SMS 13198244 ENCODE Processing Pipeline 3ffcd2d70f549bb67aefea66ffcf4b55 https://www.encodeproject.org/files/ENCFF907XHS/@@download/ENCFF907XHS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF728STH bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF482LKM 13292046 ENCODE Processing Pipeline fa6c829313636a1daf080e84605875e6 https://www.encodeproject.org/files/ENCFF728STH/@@download/ENCFF728STH.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF113VFJ bed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF437MOX, ENCFF482LKM, ENCFF706SMS 91541 ENCODE Processing Pipeline d1296fa79c4fc76c95424a3b714fc5b9 https://www.encodeproject.org/files/ENCFF113VFJ/@@download/ENCFF113VFJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF858SQW bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF437MOX 13065650 ENCODE Processing Pipeline af02121e7e66eb1a6179f5cdbad23c2c https://www.encodeproject.org/files/ENCFF858SQW/@@download/ENCFF858SQW.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF184UJK bigBed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063WXY 297702 ENCODE Processing Pipeline 5aaffe8216e18e87fde9312c8cdaff4b https://www.encodeproject.org/files/ENCFF184UJK/@@download/ENCFF184UJK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF063WXY bed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF437MOX, ENCFF482LKM, ENCFF706SMS 134101 ENCODE Processing Pipeline 4c972067fd18a0101bf8d3c87a5f66f9 https://www.encodeproject.org/files/ENCFF063WXY/@@download/ENCFF063WXY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF155FNB bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF643CGH 3771529958 ENCODE Processing Pipeline c2fbfdab7661627c4583e17c0310a261 https://www.encodeproject.org/files/ENCFF155FNB/@@download/ENCFF155FNB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF018TUW bam unfiltered alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF643CGH, ENCFF836FDG 3513810159 ENCODE Processing Pipeline ba423a095ba4a33a387cc592da712c79 https://www.encodeproject.org/files/ENCFF018TUW/@@download/ENCFF018TUW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF879NVM bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF643CGH, ENCFF836FDG 2302532918 ENCODE Processing Pipeline 44ff8b76e87263a3f073029c527c72e0 https://www.encodeproject.org/files/ENCFF879NVM/@@download/ENCFF879NVM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF009QHM bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF643CGH 2987126373 ENCODE Processing Pipeline 4ad6b9cc217ff731c228d23fca0e5378 https://www.encodeproject.org/files/ENCFF009QHM/@@download/ENCFF009QHM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF040GPY bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF879NVM, ENCFF879YMO 1016532331 ENCODE Processing Pipeline 03b1a600320e416f546b82aaa2b24901 https://www.encodeproject.org/files/ENCFF040GPY/@@download/ENCFF040GPY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF435AGY bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF009QHM, ENCFF574BGV 1067396678 ENCODE Processing Pipeline abe1dee9e6a5e04e26637fb431e65924 https://www.encodeproject.org/files/ENCFF435AGY/@@download/ENCFF435AGY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF494QMA bigWig signal p-value ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009QHM, ENCFF574BGV, ENCFF879NVM, ENCFF879YMO 1579610192 ENCODE Processing Pipeline 6fbfc5af5c936bd230ab1436a8a3ce06 https://www.encodeproject.org/files/ENCFF494QMA/@@download/ENCFF494QMA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF120DLU bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF879NVM, ENCFF879YMO 852523431 ENCODE Processing Pipeline bc4dcb0ef93d85de8d461610a7ad9701 https://www.encodeproject.org/files/ENCFF120DLU/@@download/ENCFF120DLU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF858OSO bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF009QHM, ENCFF574BGV 953028357 ENCODE Processing Pipeline 2f36a5255d06042570c7834bd048cc5e https://www.encodeproject.org/files/ENCFF858OSO/@@download/ENCFF858OSO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF873VXN bigWig fold change over control ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009QHM, ENCFF574BGV, ENCFF879NVM, ENCFF879YMO 1835346783 ENCODE Processing Pipeline b372ac065a441cc18db88d172c3cc5b0 https://www.encodeproject.org/files/ENCFF873VXN/@@download/ENCFF873VXN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF016PDY bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF879NVM, ENCFF879YMO 5913372 ENCODE Processing Pipeline 5f4531bd0be5281e935d2b132a9231c8 https://www.encodeproject.org/files/ENCFF016PDY/@@download/ENCFF016PDY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF915OZF bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009QHM, ENCFF574BGV, ENCFF879NVM, ENCFF879YMO 7067214 ENCODE Processing Pipeline 9d178339f34d4725832ab1fa4a2b25f5 https://www.encodeproject.org/files/ENCFF915OZF/@@download/ENCFF915OZF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF234NSX bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF009QHM, ENCFF574BGV 6321305 ENCODE Processing Pipeline 0a31c1feb233d3a7956536496cc37a95 https://www.encodeproject.org/files/ENCFF234NSX/@@download/ENCFF234NSX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF406CHE bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF016PDY 13153864 ENCODE Processing Pipeline 5936db74bd801027936e0ecb06584f7e https://www.encodeproject.org/files/ENCFF406CHE/@@download/ENCFF406CHE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF183DGJ bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF234NSX 13281720 ENCODE Processing Pipeline f7f50af8fa22d01b84246bd78af7cc8c https://www.encodeproject.org/files/ENCFF183DGJ/@@download/ENCFF183DGJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF483MBO bigBed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF915OZF 13045242 ENCODE Processing Pipeline 58a44be9efeb39795686d890fbda8ca1 https://www.encodeproject.org/files/ENCFF483MBO/@@download/ENCFF483MBO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF447UIU bigBed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF060MGE 225332 ENCODE Processing Pipeline 4e78db03d19a2d6f5aff1c488136d66d https://www.encodeproject.org/files/ENCFF447UIU/@@download/ENCFF447UIU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF412GFI bed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF016PDY, ENCFF234NSX, ENCFF419RSJ, ENCFF915OZF 127697 ENCODE Processing Pipeline 5af51fe03e6020d40a59ee2625e7b16f https://www.encodeproject.org/files/ENCFF412GFI/@@download/ENCFF412GFI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF060MGE bed narrowPeak conservative idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF016PDY, ENCFF234NSX, ENCFF419RSJ, ENCFF915OZF 84396 ENCODE Processing Pipeline 0c109b185e7c3d30fcd7ba120ef2cad6 https://www.encodeproject.org/files/ENCFF060MGE/@@download/ENCFF060MGE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF610OPL bigBed narrowPeak optimal idr thresholded peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF412GFI 292807 ENCODE Processing Pipeline d6a57597f53684d7c47b7697780c5ecf https://www.encodeproject.org/files/ENCFF610OPL/@@download/ENCFF610OPL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF128NBF fastq reads ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1969636306 Richard Myers, HAIB 0517eced2fd200ec04d4114b52c76f32 SRA:SRR5339289 https://www.encodeproject.org/files/ENCFF128NBF/@@download/ENCFF128NBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF024PSP fastq reads ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2182881520 Richard Myers, HAIB 6eb6e857c817ebb016ad75bed071dcfa SRA:SRR5339288 https://www.encodeproject.org/files/ENCFF024PSP/@@download/ENCFF024PSP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF364ULF bam unfiltered alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF128NBF, ENCFF643CGH 2106305398 ENCODE Processing Pipeline 69913adbf9474326cafbfe6f14481655 https://www.encodeproject.org/files/ENCFF364ULF/@@download/ENCFF364ULF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF856URQ bam unfiltered alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF128NBF, ENCFF807MUK 2101978499 ENCODE Processing Pipeline 67c4d86c687f6ad78c77b53e738bcbf8 https://www.encodeproject.org/files/ENCFF856URQ/@@download/ENCFF856URQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF596FMG bam unfiltered alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF024PSP, ENCFF807MUK 2394871886 ENCODE Processing Pipeline 605365a83e535c288cbcb013037f4095 https://www.encodeproject.org/files/ENCFF596FMG/@@download/ENCFF596FMG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF043WWC bam unfiltered alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF024PSP, ENCFF643CGH 2399087984 ENCODE Processing Pipeline 8675b215f09493a212e661bd395bf2de https://www.encodeproject.org/files/ENCFF043WWC/@@download/ENCFF043WWC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF094BOF bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF128NBF, ENCFF643CGH 1664130757 ENCODE Processing Pipeline 96b9e216a34f1d18bbb4e94b22054212 https://www.encodeproject.org/files/ENCFF094BOF/@@download/ENCFF094BOF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF287FTU bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF024PSP, ENCFF807MUK 1705175450 ENCODE Processing Pipeline b9a0e5d9358d1144b81343a20f87f64c https://www.encodeproject.org/files/ENCFF287FTU/@@download/ENCFF287FTU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF384GVG bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF128NBF, ENCFF807MUK 1663206860 ENCODE Processing Pipeline 1867cb6f6c67e248b1c545562586795e https://www.encodeproject.org/files/ENCFF384GVG/@@download/ENCFF384GVG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF158DOO bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF024PSP, ENCFF643CGH 1705903223 ENCODE Processing Pipeline ec5c5a6d4c845cf34f55b816902cbae0 https://www.encodeproject.org/files/ENCFF158DOO/@@download/ENCFF158DOO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF495HCC bigWig signal p-value ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF094BOF 635264425 ENCODE Processing Pipeline 431302fe56ab5a18f7de221aa16c15cc https://www.encodeproject.org/files/ENCFF495HCC/@@download/ENCFF495HCC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF697PQI bigWig signal p-value ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF158DOO 629574623 ENCODE Processing Pipeline 54a18a44427bfcea14b7af29a094b927 https://www.encodeproject.org/files/ENCFF697PQI/@@download/ENCFF697PQI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF370RRF bigWig signal p-value ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF094BOF, ENCFF158DOO 644268042 ENCODE Processing Pipeline e75a51d6ac7b518c135d1ec743d18654 https://www.encodeproject.org/files/ENCFF370RRF/@@download/ENCFF370RRF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF355KCP bigWig fold change over control ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF158DOO 612343785 ENCODE Processing Pipeline 3b2afe378097b1057f52c3437766b17d https://www.encodeproject.org/files/ENCFF355KCP/@@download/ENCFF355KCP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF803LLG bigWig fold change over control ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF094BOF 602858368 ENCODE Processing Pipeline 4e61b7e961bb5fdeafc07625a7ee67e2 https://www.encodeproject.org/files/ENCFF803LLG/@@download/ENCFF803LLG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF277XHE bigWig fold change over control ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF094BOF, ENCFF158DOO 992647942 ENCODE Processing Pipeline e2fa4a58ed58e4a09c35bc6751f3f9d8 https://www.encodeproject.org/files/ENCFF277XHE/@@download/ENCFF277XHE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF813GQJ bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF094BOF 6162821 ENCODE Processing Pipeline 53f4d71f364d565def97aaebd4a2fddc https://www.encodeproject.org/files/ENCFF813GQJ/@@download/ENCFF813GQJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927JCC bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF158DOO 6393673 ENCODE Processing Pipeline 9496a9ae6e867b447ffe6dde867282a0 https://www.encodeproject.org/files/ENCFF927JCC/@@download/ENCFF927JCC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF883MSN bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF094BOF, ENCFF158DOO 6842680 ENCODE Processing Pipeline 0000d2be00a2f6d3039310303833dbd8 https://www.encodeproject.org/files/ENCFF883MSN/@@download/ENCFF883MSN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF590YYG bigBed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF813GQJ 13138014 ENCODE Processing Pipeline b3a109bb844ae510e8ff9ef4023ee1b1 https://www.encodeproject.org/files/ENCFF590YYG/@@download/ENCFF590YYG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF598JJN bigBed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF927JCC 13104564 ENCODE Processing Pipeline 449edff6fa7994bbf8d4227cf6e97ff6 https://www.encodeproject.org/files/ENCFF598JJN/@@download/ENCFF598JJN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF348TLV bigBed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF883MSN 13049857 ENCODE Processing Pipeline dcfc72085b38134d12980bbc09bd7f82 https://www.encodeproject.org/files/ENCFF348TLV/@@download/ENCFF348TLV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF751UFO bed narrowPeak conservative idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF813GQJ, ENCFF883MSN, ENCFF927JCC 425583 ENCODE Processing Pipeline f8f915a5c04c581d647fcceede670000 https://www.encodeproject.org/files/ENCFF751UFO/@@download/ENCFF751UFO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF052EOE bed narrowPeak optimal idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF813GQJ, ENCFF883MSN, ENCFF927JCC 456774 ENCODE Processing Pipeline 5da734b7a66d68f03cdb8d8821178d7b https://www.encodeproject.org/files/ENCFF052EOE/@@download/ENCFF052EOE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF911RJS bigBed narrowPeak conservative idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF751UFO 858785 ENCODE Processing Pipeline 6520c40714b029ae3f7d67429d003162 https://www.encodeproject.org/files/ENCFF911RJS/@@download/ENCFF911RJS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF432VTY bigBed narrowPeak optimal idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF052EOE 905642 ENCODE Processing Pipeline 114dd98708078a764ca4d77dd55c0be4 https://www.encodeproject.org/files/ENCFF432VTY/@@download/ENCFF432VTY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF754GGN bigWig signal p-value ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF384GVG 1211609075 ENCODE Processing Pipeline 2c22810eadc32b08fdd7a866dd73dcab https://www.encodeproject.org/files/ENCFF754GGN/@@download/ENCFF754GGN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF711MHT bigWig signal p-value ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF287FTU 1307501088 ENCODE Processing Pipeline 2bc176288b70914b7671c4f3301fe482 https://www.encodeproject.org/files/ENCFF711MHT/@@download/ENCFF711MHT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF335LIX bigWig signal p-value ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF287FTU, ENCFF384GVG 1787454877 ENCODE Processing Pipeline 8a8873e881755ed6008b508f4bc16a20 https://www.encodeproject.org/files/ENCFF335LIX/@@download/ENCFF335LIX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF183CSU bigWig fold change over control ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF384GVG 1070206900 ENCODE Processing Pipeline 76c316861bea809d23f46a8bd56cabd5 https://www.encodeproject.org/files/ENCFF183CSU/@@download/ENCFF183CSU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF185AMK bigWig fold change over control ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF287FTU 1143577638 ENCODE Processing Pipeline e5fb79f811968f5be919b995de40a34c https://www.encodeproject.org/files/ENCFF185AMK/@@download/ENCFF185AMK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF026EFC bigWig fold change over control ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF287FTU, ENCFF384GVG 1641183040 ENCODE Processing Pipeline 13f1247e7fb602714ae3458ef7842d35 https://www.encodeproject.org/files/ENCFF026EFC/@@download/ENCFF026EFC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684QNN bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF287FTU 6790311 ENCODE Processing Pipeline ca9f88b167eafe7d477d98130f917a68 https://www.encodeproject.org/files/ENCFF684QNN/@@download/ENCFF684QNN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF967KQK bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF384GVG 6740546 ENCODE Processing Pipeline d6a36188d902c401e9801ce8bcd19d9f https://www.encodeproject.org/files/ENCFF967KQK/@@download/ENCFF967KQK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF507QHH bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF287FTU, ENCFF384GVG 7072373 ENCODE Processing Pipeline 1cdecb6a3e016523a96fdf6627dfb301 https://www.encodeproject.org/files/ENCFF507QHH/@@download/ENCFF507QHH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF047RUG bigBed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF967KQK 13151864 ENCODE Processing Pipeline 811d358fc514c7b960677792694239f9 https://www.encodeproject.org/files/ENCFF047RUG/@@download/ENCFF047RUG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF634CZL bigBed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF684QNN 13090992 ENCODE Processing Pipeline ace362aba5c1a8246519794997047202 https://www.encodeproject.org/files/ENCFF634CZL/@@download/ENCFF634CZL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF993EVG bigBed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF507QHH 13022379 ENCODE Processing Pipeline 53063e7c4fb0ce03026c3232fff3bca7 https://www.encodeproject.org/files/ENCFF993EVG/@@download/ENCFF993EVG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF741SPC bed narrowPeak conservative idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF507QHH, ENCFF684QNN, ENCFF967KQK 415299 ENCODE Processing Pipeline 2a9d8e0fd7f957408a70be6da0a0adfd https://www.encodeproject.org/files/ENCFF741SPC/@@download/ENCFF741SPC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF964WLP bigBed narrowPeak optimal idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF602SZJ 892290 ENCODE Processing Pipeline a0c9a80f6451d28a050649ecc24ecb09 https://www.encodeproject.org/files/ENCFF964WLP/@@download/ENCFF964WLP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF763OXX bigBed narrowPeak conservative idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF741SPC 878652 ENCODE Processing Pipeline 4781be2015cfd9bd07fae86a61a366f7 https://www.encodeproject.org/files/ENCFF763OXX/@@download/ENCFF763OXX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF602SZJ bed narrowPeak optimal idr thresholded peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF507QHH, ENCFF684QNN, ENCFF967KQK 424464 ENCODE Processing Pipeline 9d7ed0d84a7c2b1c06dbe54bfa83d64b https://www.encodeproject.org/files/ENCFF602SZJ/@@download/ENCFF602SZJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF726XZG bam unfiltered alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 100 ENCFF007IDQ, ENCFF807MUK, ENCFF908PTR 7112727804 ENCODE Processing Pipeline 3bb46e8606bcfa08451abc5e6a54a936 https://www.encodeproject.org/files/ENCFF726XZG/@@download/ENCFF726XZG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF851AHS bam unfiltered alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 100 ENCFF188LAZ, ENCFF395XDN, ENCFF807MUK 4458599939 ENCODE Processing Pipeline 10f9b8f5b9618517b33135f21dda37d4 https://www.encodeproject.org/files/ENCFF851AHS/@@download/ENCFF851AHS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF007IDQ fastq reads ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 2 ENCFF908PTR 3456321995 Michael Snyder, Stanford 611ad5965de09e9c501593edaebc14e9 SRA:SRR5112082 https://www.encodeproject.org/files/ENCFF007IDQ/@@download/ENCFF007IDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF904LUM/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF188LAZ fastq reads ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF395XDN 2111523731 Michael Snyder, Stanford d794d18c533718e20043660e4c916935 SRA:SRR5112083 https://www.encodeproject.org/files/ENCFF188LAZ/@@download/ENCFF188LAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF904LUM/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF908PTR fastq reads ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 1 ENCFF007IDQ 3507817077 Michael Snyder, Stanford 3eeed5f684e16dc68ff736cd31008e4e SRA:SRR5112082 https://www.encodeproject.org/files/ENCFF908PTR/@@download/ENCFF908PTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF823MCH/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF395XDN fastq reads ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF188LAZ 2009116309 Michael Snyder, Stanford 1b49a458f1a3eb9cda8442768ae67941 SRA:SRR5112083 https://www.encodeproject.org/files/ENCFF395XDN/@@download/ENCFF395XDN.fastq.gz Illumina HiSeq 2000 /files/ENCFF823MCH/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF234PKC bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 100 ENCFF007IDQ, ENCFF807MUK, ENCFF908PTR 4257403127 ENCODE Processing Pipeline 68278ca4565ff0cd63eb1a50304ff51c https://www.encodeproject.org/files/ENCFF234PKC/@@download/ENCFF234PKC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF676IGA bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 100 ENCFF188LAZ, ENCFF395XDN, ENCFF807MUK 3267407979 ENCODE Processing Pipeline 02e14b03ccc5fa0fb50b80d9d1efd8fa https://www.encodeproject.org/files/ENCFF676IGA/@@download/ENCFF676IGA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF192BQU bigWig fold change over control ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF234PKC, ENCFF676IGA, ENCFF985LZI 1453561836 ENCODE Processing Pipeline f977f721a1704262f0f380c9e3c72f75 https://www.encodeproject.org/files/ENCFF192BQU/@@download/ENCFF192BQU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF576SVU bigWig fold change over control ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF234PKC, ENCFF985LZI 1017810690 ENCODE Processing Pipeline 996bc02dd28d459cf6699d99090262ac https://www.encodeproject.org/files/ENCFF576SVU/@@download/ENCFF576SVU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF591AAC bigBed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF847LIB 11262341 ENCODE Processing Pipeline 84c43f1cec5e01fadb2eb29081ad149e https://www.encodeproject.org/files/ENCFF591AAC/@@download/ENCFF591AAC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF355IZF bigWig signal p-value ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF676IGA, ENCFF985LZI 1073448006 ENCODE Processing Pipeline eec5e23453cbe3c5e9ca5b00d13e9b29 https://www.encodeproject.org/files/ENCFF355IZF/@@download/ENCFF355IZF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF381OFM bigWig signal p-value ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF234PKC, ENCFF985LZI 1062919427 ENCODE Processing Pipeline c85573c969f7a4cf415fbd0aace38901 https://www.encodeproject.org/files/ENCFF381OFM/@@download/ENCFF381OFM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF013TZM bigWig signal p-value ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF234PKC, ENCFF676IGA, ENCFF985LZI 1256506709 ENCODE Processing Pipeline 78615de49c3c546b424b88c864019563 https://www.encodeproject.org/files/ENCFF013TZM/@@download/ENCFF013TZM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF334GZR bigWig fold change over control ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF676IGA, ENCFF985LZI 915722706 ENCODE Processing Pipeline c17818f958633ba16fc829a20a3da5f1 https://www.encodeproject.org/files/ENCFF334GZR/@@download/ENCFF334GZR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF207HZD bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF234PKC, ENCFF985LZI 5649743 ENCODE Processing Pipeline 0555764c4566ad7d32c7afc448d29081 https://www.encodeproject.org/files/ENCFF207HZD/@@download/ENCFF207HZD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF237JZC bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF676IGA, ENCFF985LZI 6000653 ENCODE Processing Pipeline f7838b40ca9c0c92219e84adafab3aea https://www.encodeproject.org/files/ENCFF237JZC/@@download/ENCFF237JZC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF847LIB bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF234PKC, ENCFF676IGA, ENCFF985LZI 6916136 ENCODE Processing Pipeline d052289690e58a3e229ff0818d4dd73f https://www.encodeproject.org/files/ENCFF847LIB/@@download/ENCFF847LIB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF912ZSS bigBed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF237JZC 11267049 ENCODE Processing Pipeline 289aba0505ec24d60a9d43ae5c844ddb https://www.encodeproject.org/files/ENCFF912ZSS/@@download/ENCFF912ZSS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF939OXK bigBed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF207HZD 11355927 ENCODE Processing Pipeline cda9db3207125ff82380b71eba39a47f https://www.encodeproject.org/files/ENCFF939OXK/@@download/ENCFF939OXK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF751PQV bam unfiltered alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 100 ENCFF188LAZ, ENCFF395XDN, ENCFF643CGH 4465066100 ENCODE Processing Pipeline c78732ffdeaff2c99f2f718f48ab4400 https://www.encodeproject.org/files/ENCFF751PQV/@@download/ENCFF751PQV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF821DYA bam unfiltered alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 100 ENCFF007IDQ, ENCFF643CGH, ENCFF908PTR 7117445107 ENCODE Processing Pipeline b8cd4fc57ff4b718984d7bab1e70e0d3 https://www.encodeproject.org/files/ENCFF821DYA/@@download/ENCFF821DYA.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF145ZDW bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 100 ENCFF188LAZ, ENCFF395XDN, ENCFF643CGH 3267556444 ENCODE Processing Pipeline 38a76ba75ff5459d7142a578a5af50ff https://www.encodeproject.org/files/ENCFF145ZDW/@@download/ENCFF145ZDW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF831ODM bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 100 ENCFF007IDQ, ENCFF643CGH, ENCFF908PTR 4257559729 ENCODE Processing Pipeline b249037efa59f654d9e05f33aed0c47b https://www.encodeproject.org/files/ENCFF831ODM/@@download/ENCFF831ODM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF221TLG bigWig signal p-value ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF073AHU, ENCFF145ZDW 846322977 ENCODE Processing Pipeline 51b0f73afcf7281d21382a1006941494 https://www.encodeproject.org/files/ENCFF221TLG/@@download/ENCFF221TLG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF576BHM bigWig signal p-value ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF073AHU, ENCFF831ODM 1084244825 ENCODE Processing Pipeline 65e32c4e86bba892f4b6e73cb7928131 https://www.encodeproject.org/files/ENCFF576BHM/@@download/ENCFF576BHM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF332LET bigWig signal p-value ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF073AHU, ENCFF145ZDW, ENCFF831ODM 1285769095 ENCODE Processing Pipeline ba7f10f9a222aab45cb7647fb2de32fc https://www.encodeproject.org/files/ENCFF332LET/@@download/ENCFF332LET.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF689XFL bigWig fold change over control ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF073AHU, ENCFF145ZDW 921703278 ENCODE Processing Pipeline 259c47e98c29bb4587b6e2cb603cba2b https://www.encodeproject.org/files/ENCFF689XFL/@@download/ENCFF689XFL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF413FFH bigWig fold change over control ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF073AHU, ENCFF831ODM 1019823492 ENCODE Processing Pipeline abd19556c02bf74e4cd3f8f957841a95 https://www.encodeproject.org/files/ENCFF413FFH/@@download/ENCFF413FFH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF524GCL bigWig fold change over control ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF073AHU, ENCFF145ZDW, ENCFF831ODM 1483895499 ENCODE Processing Pipeline 91241af47e1fe35b52166869c51134c9 https://www.encodeproject.org/files/ENCFF524GCL/@@download/ENCFF524GCL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF815TNI bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF073AHU, ENCFF145ZDW 5828660 ENCODE Processing Pipeline 8628529ccd9cd40f8b96c13392a4280e https://www.encodeproject.org/files/ENCFF815TNI/@@download/ENCFF815TNI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF319NMP bigBed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF815TNI 11259512 ENCODE Processing Pipeline 99a2cc7cc109a687328253301f1019b6 https://www.encodeproject.org/files/ENCFF319NMP/@@download/ENCFF319NMP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF710PCL bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF073AHU, ENCFF831ODM 5444826 ENCODE Processing Pipeline cd76b7fcb1b066a9e83fed26e74e1c12 https://www.encodeproject.org/files/ENCFF710PCL/@@download/ENCFF710PCL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF965NQP bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF073AHU, ENCFF145ZDW, ENCFF831ODM 6821495 ENCODE Processing Pipeline e9d4990980cff212b3b411ac10fbea3e https://www.encodeproject.org/files/ENCFF965NQP/@@download/ENCFF965NQP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF872BHX bigBed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF965NQP 11277503 ENCODE Processing Pipeline d99bf24c99fa580046b27c9c9a76927a https://www.encodeproject.org/files/ENCFF872BHX/@@download/ENCFF872BHX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF392HUT bigBed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF710PCL 11333978 ENCODE Processing Pipeline 3034092d58e4d597aea42dc0a1ee46c3 https://www.encodeproject.org/files/ENCFF392HUT/@@download/ENCFF392HUT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF491MEQ bigBed narrowPeak conservative idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF036PCO 97605 ENCODE Processing Pipeline add6e2d40a95ccebe472c237805388a8 https://www.encodeproject.org/files/ENCFF491MEQ/@@download/ENCFF491MEQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF036PCO bed narrowPeak conservative idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF710PCL, ENCFF815TNI, ENCFF965NQP 24243 ENCODE Processing Pipeline d233df216776f5a7b3027037942b7d5e https://www.encodeproject.org/files/ENCFF036PCO/@@download/ENCFF036PCO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF882OXO bigBed narrowPeak optimal idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF406XWT 125967 ENCODE Processing Pipeline 739291e2a72c565cb98d8d210c49cce5 https://www.encodeproject.org/files/ENCFF882OXO/@@download/ENCFF882OXO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF406XWT bed narrowPeak optimal idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF710PCL, ENCFF815TNI, ENCFF965NQP 42946 ENCODE Processing Pipeline a785b0ab3b99263face2d00adc1c5c70 https://www.encodeproject.org/files/ENCFF406XWT/@@download/ENCFF406XWT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF967QZK bigBed narrowPeak conservative idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF719RTA 76518 ENCODE Processing Pipeline c0204e23e53e94979f7bf7e584f481b3 https://www.encodeproject.org/files/ENCFF967QZK/@@download/ENCFF967QZK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF719RTA bed narrowPeak conservative idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF207HZD, ENCFF237JZC, ENCFF847LIB 20640 ENCODE Processing Pipeline 56cb9e83967cb122600b574351b9c3dd https://www.encodeproject.org/files/ENCFF719RTA/@@download/ENCFF719RTA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF176NOI bed narrowPeak optimal idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF207HZD, ENCFF237JZC, ENCFF847LIB 36606 ENCODE Processing Pipeline 607bb4cf8872522d66cec5314f6ad991 https://www.encodeproject.org/files/ENCFF176NOI/@@download/ENCFF176NOI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF678WRF bigBed narrowPeak optimal idr thresholded peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF176NOI 115123 ENCODE Processing Pipeline 1de6c384a54e7ec0c5c324861fe9cb26 https://www.encodeproject.org/files/ENCFF678WRF/@@download/ENCFF678WRF.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF992LWJ bam unfiltered alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 100 ENCFF741IHV, ENCFF807MUK, ENCFF990UUV 4739265639 ENCODE Processing Pipeline be5c5c2cfcb7af799c69df03c1794c0b https://www.encodeproject.org/files/ENCFF992LWJ/@@download/ENCFF992LWJ.bam hg19 released mild to moderate bottlenecking ENCFF583SMB bam unfiltered alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 100 ENCFF362ZRF, ENCFF807MUK, ENCFF896IZU 4470423045 ENCODE Processing Pipeline 611f1de807fa4a17097318244203eade https://www.encodeproject.org/files/ENCFF583SMB/@@download/ENCFF583SMB.bam hg19 released mild to moderate bottlenecking ENCFF896IZU fastq reads ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF362ZRF 2123478734 Michael Snyder, Stanford 5bc727a0909b4e1710f1ab315146cb89 SRA:SRR5111049 https://www.encodeproject.org/files/ENCFF896IZU/@@download/ENCFF896IZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF362ZRF fastq reads ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF896IZU 2068740629 Michael Snyder, Stanford e1e5b5b81af1afc9aaee4dd1098b7553 SRA:SRR5111049 https://www.encodeproject.org/files/ENCFF362ZRF/@@download/ENCFF362ZRF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF990UUV fastq reads ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF741IHV 2169215444 Michael Snyder, Stanford 0c0f9b02f1aea6f7b50dc7a87b10b866 SRA:SRR5111050 https://www.encodeproject.org/files/ENCFF990UUV/@@download/ENCFF990UUV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF741IHV fastq reads ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF990UUV 2226535597 Michael Snyder, Stanford 5661a0cd97efbd89bf15824f9a598ba4 SRA:SRR5111050 https://www.encodeproject.org/files/ENCFF741IHV/@@download/ENCFF741IHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF406KFP bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 100 ENCFF362ZRF, ENCFF807MUK, ENCFF896IZU 3650813528 ENCODE Processing Pipeline 75b38415cf457fdc256bc482a1a20320 https://www.encodeproject.org/files/ENCFF406KFP/@@download/ENCFF406KFP.bam hg19 released mild to moderate bottlenecking ENCFF686HTQ bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 100 ENCFF741IHV, ENCFF807MUK, ENCFF990UUV 3856474863 ENCODE Processing Pipeline d3245fce83609e50866db5fb1dcdd367 https://www.encodeproject.org/files/ENCFF686HTQ/@@download/ENCFF686HTQ.bam hg19 released mild to moderate bottlenecking ENCFF747BDB bigWig signal p-value ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF406KFP, ENCFF581ZJL 939024405 ENCODE Processing Pipeline b7db7e8fb3f39f14ca406dfd8f86cdc9 https://www.encodeproject.org/files/ENCFF747BDB/@@download/ENCFF747BDB.bigWig hg19 released mild to moderate bottlenecking ENCFF531JPY bigWig signal p-value ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF686HTQ 945255577 ENCODE Processing Pipeline f1039f7c2ad6bd4df5946792772cd70c https://www.encodeproject.org/files/ENCFF531JPY/@@download/ENCFF531JPY.bigWig hg19 released mild to moderate bottlenecking ENCFF089KXL bigWig fold change over control ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF686HTQ 1104488362 ENCODE Processing Pipeline b8923ebdffa2c79c15ee238742a5b895 https://www.encodeproject.org/files/ENCFF089KXL/@@download/ENCFF089KXL.bigWig hg19 released mild to moderate bottlenecking ENCFF892TRP bigWig signal p-value ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF406KFP, ENCFF581ZJL, ENCFF686HTQ 1925121414 ENCODE Processing Pipeline 4a0e86ab7f2ac866689e0c54d1d0cc97 https://www.encodeproject.org/files/ENCFF892TRP/@@download/ENCFF892TRP.bigWig hg19 released mild to moderate bottlenecking ENCFF851MMQ bigWig fold change over control ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF406KFP, ENCFF581ZJL 1071545987 ENCODE Processing Pipeline cfa5c2ca3af2bcd5cb63620f781e66a5 https://www.encodeproject.org/files/ENCFF851MMQ/@@download/ENCFF851MMQ.bigWig hg19 released mild to moderate bottlenecking ENCFF697WDH bigWig fold change over control ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF406KFP, ENCFF581ZJL, ENCFF686HTQ 1984986367 ENCODE Processing Pipeline 487f62e41c5d4f99611fb77f5754162d https://www.encodeproject.org/files/ENCFF697WDH/@@download/ENCFF697WDH.bigWig hg19 released mild to moderate bottlenecking ENCFF074FFL bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF406KFP, ENCFF581ZJL, ENCFF686HTQ 7065052 ENCODE Processing Pipeline 1e856749a0963af3924232f5d1184597 https://www.encodeproject.org/files/ENCFF074FFL/@@download/ENCFF074FFL.bed.gz hg19 released mild to moderate bottlenecking ENCFF888AZU bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF406KFP, ENCFF581ZJL 6893480 ENCODE Processing Pipeline aa22323020872da6f25c0326969b9c18 https://www.encodeproject.org/files/ENCFF888AZU/@@download/ENCFF888AZU.bed.gz hg19 released mild to moderate bottlenecking ENCFF810MGC bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF686HTQ 6915987 ENCODE Processing Pipeline a3c8fdc3ddfd955a8ff0e3dc31180d4d https://www.encodeproject.org/files/ENCFF810MGC/@@download/ENCFF810MGC.bed.gz hg19 released mild to moderate bottlenecking ENCFF992ZGT bigBed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF810MGC 12862830 ENCODE Processing Pipeline 4fabb94f1f80c552a68512713da8f5a7 https://www.encodeproject.org/files/ENCFF992ZGT/@@download/ENCFF992ZGT.bigBed hg19 released mild to moderate bottlenecking ENCFF562JDH bed narrowPeak optimal idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF074FFL, ENCFF810MGC, ENCFF888AZU 563260 ENCODE Processing Pipeline cc91f30f2f516fcd7c689ded645811d5 https://www.encodeproject.org/files/ENCFF562JDH/@@download/ENCFF562JDH.bed.gz hg19 released mild to moderate bottlenecking ENCFF472RUJ bigBed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF888AZU 12580804 ENCODE Processing Pipeline 90dad6c34676c17909c6ed0d4f870024 https://www.encodeproject.org/files/ENCFF472RUJ/@@download/ENCFF472RUJ.bigBed hg19 released mild to moderate bottlenecking ENCFF434IHH bigBed narrowPeak conservative idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF631IAC 801733 ENCODE Processing Pipeline 3954212ec65d2206c7ddab35c10b264a https://www.encodeproject.org/files/ENCFF434IHH/@@download/ENCFF434IHH.bigBed hg19 released mild to moderate bottlenecking ENCFF987QGI bigBed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF074FFL 12457622 ENCODE Processing Pipeline 3d5fcfe146959ddb1fe23133d750a997 https://www.encodeproject.org/files/ENCFF987QGI/@@download/ENCFF987QGI.bigBed hg19 released mild to moderate bottlenecking ENCFF631IAC bed narrowPeak conservative idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF074FFL, ENCFF810MGC, ENCFF888AZU 405112 ENCODE Processing Pipeline 22a606470a5877124d50fd35f51ee691 https://www.encodeproject.org/files/ENCFF631IAC/@@download/ENCFF631IAC.bed.gz hg19 released mild to moderate bottlenecking ENCFF271DVA bigBed narrowPeak optimal idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF562JDH 1029205 ENCODE Processing Pipeline 4d71ecb5d5b326bc4ce2d41107fbcab3 https://www.encodeproject.org/files/ENCFF271DVA/@@download/ENCFF271DVA.bigBed hg19 released mild to moderate bottlenecking ENCFF876AWI bam unfiltered alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 100 ENCFF643CGH, ENCFF741IHV, ENCFF990UUV 4742804562 ENCODE Processing Pipeline 02f53dc2bb758a184f914be66d24f717 https://www.encodeproject.org/files/ENCFF876AWI/@@download/ENCFF876AWI.bam GRCh38 released mild to moderate bottlenecking ENCFF203LSM bam unfiltered alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 100 ENCFF362ZRF, ENCFF643CGH, ENCFF896IZU 4473290822 ENCODE Processing Pipeline ae33723943922f870a99eb133938c6a5 https://www.encodeproject.org/files/ENCFF203LSM/@@download/ENCFF203LSM.bam GRCh38 released mild to moderate bottlenecking ENCFF408BKE bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 100 ENCFF362ZRF, ENCFF643CGH, ENCFF896IZU 3652522465 ENCODE Processing Pipeline 6b2dedc892417ef98297cfda5aef7894 https://www.encodeproject.org/files/ENCFF408BKE/@@download/ENCFF408BKE.bam GRCh38 released mild to moderate bottlenecking ENCFF497GOO bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 100 ENCFF643CGH, ENCFF741IHV, ENCFF990UUV 3858486275 ENCODE Processing Pipeline a75600648109539fee7f9c63943801d3 https://www.encodeproject.org/files/ENCFF497GOO/@@download/ENCFF497GOO.bam GRCh38 released mild to moderate bottlenecking ENCFF226PJM bigWig signal p-value ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF408BKE, ENCFF910IKB 1024895026 ENCODE Processing Pipeline c8ab0074d7bdbd845c64917bac9826fe https://www.encodeproject.org/files/ENCFF226PJM/@@download/ENCFF226PJM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF266OBR bigWig signal p-value ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF497GOO 1106942876 ENCODE Processing Pipeline 4e7fa8d84a83bde4a1fa99a81033f30c https://www.encodeproject.org/files/ENCFF266OBR/@@download/ENCFF266OBR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF443FFA bigWig signal p-value ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF408BKE, ENCFF497GOO, ENCFF910IKB 2007659149 ENCODE Processing Pipeline 3151bc89b99b5578092a613382208920 https://www.encodeproject.org/files/ENCFF443FFA/@@download/ENCFF443FFA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF567MTR bigWig fold change over control ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF408BKE, ENCFF910IKB 1072927734 ENCODE Processing Pipeline 735add18aeafdd5b360a972a001c7d43 https://www.encodeproject.org/files/ENCFF567MTR/@@download/ENCFF567MTR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF979PUM bigWig fold change over control ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF497GOO 1098652613 ENCODE Processing Pipeline 98b70920f7c5f4eb6e7da385bc9a5ee8 https://www.encodeproject.org/files/ENCFF979PUM/@@download/ENCFF979PUM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF088GRY bigWig fold change over control ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF408BKE, ENCFF497GOO, ENCFF910IKB 1995924899 ENCODE Processing Pipeline 6a461530bbed7cf12540c38f06032e34 https://www.encodeproject.org/files/ENCFF088GRY/@@download/ENCFF088GRY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF448UGC bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF408BKE, ENCFF910IKB 6937384 ENCODE Processing Pipeline 8d7198842a1abe38f33967945463a336 https://www.encodeproject.org/files/ENCFF448UGC/@@download/ENCFF448UGC.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF999UMW bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF497GOO 6857449 ENCODE Processing Pipeline f31689d7850c5ab8fe50560f2aae4de4 https://www.encodeproject.org/files/ENCFF999UMW/@@download/ENCFF999UMW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF971JMJ bigBed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF448UGC 12701441 ENCODE Processing Pipeline 3e267b484dddf923c3acf17225d35f2d https://www.encodeproject.org/files/ENCFF971JMJ/@@download/ENCFF971JMJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF735PXM bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF408BKE, ENCFF497GOO, ENCFF910IKB 7064525 ENCODE Processing Pipeline 9dc258f89fc7c332df95b2f3e14fe41c https://www.encodeproject.org/files/ENCFF735PXM/@@download/ENCFF735PXM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF355GEL bigBed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF999UMW 12926106 ENCODE Processing Pipeline 5e58313b71f682ca4314cd28f99dd6fc https://www.encodeproject.org/files/ENCFF355GEL/@@download/ENCFF355GEL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF694UZS bigBed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF735PXM 12463510 ENCODE Processing Pipeline 16f825f05ac5b2d22ed30d99c10bd275 https://www.encodeproject.org/files/ENCFF694UZS/@@download/ENCFF694UZS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF672AGD bed narrowPeak conservative idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF448UGC, ENCFF735PXM, ENCFF999UMW 399564 ENCODE Processing Pipeline e3390556316cb513ab9a4eca8f0f5191 https://www.encodeproject.org/files/ENCFF672AGD/@@download/ENCFF672AGD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF507QZQ bigBed narrowPeak conservative idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF672AGD 795257 ENCODE Processing Pipeline f051c4dcf51e938ce769955162c18b92 https://www.encodeproject.org/files/ENCFF507QZQ/@@download/ENCFF507QZQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF618YRQ bed narrowPeak optimal idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF448UGC, ENCFF735PXM, ENCFF999UMW 559567 ENCODE Processing Pipeline 4874fe372a32dd38b068561e6343a8b0 https://www.encodeproject.org/files/ENCFF618YRQ/@@download/ENCFF618YRQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF471IPA bigBed narrowPeak optimal idr thresholded peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF618YRQ 1025738 ENCODE Processing Pipeline abcf9f7a6c6282d4f883d3985ce319f1 https://www.encodeproject.org/files/ENCFF471IPA/@@download/ENCFF471IPA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF577YSB fastq reads ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF562IQT 3913769280 Michael Snyder, Stanford a6f7e4dbdcb21c7239fdce1198b42de8 SRA:SRR5112177 https://www.encodeproject.org/files/ENCFF577YSB/@@download/ENCFF577YSB.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released borderline replicate concordance, antibody characterized with exemption ENCFF562IQT fastq reads ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF577YSB 4312047090 Michael Snyder, Stanford dc30a7a0003bb20d3e5ca5c5fad46f00 SRA:SRR5112177 https://www.encodeproject.org/files/ENCFF562IQT/@@download/ENCFF562IQT.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released borderline replicate concordance, antibody characterized with exemption ENCFF590KVS fastq reads ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF447OXS 4208999300 Michael Snyder, Stanford a743d68a576ac2604ebda38ddf8956b2 SRA:SRR5112176 https://www.encodeproject.org/files/ENCFF590KVS/@@download/ENCFF590KVS.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released borderline replicate concordance, antibody characterized with exemption ENCFF447OXS fastq reads ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF590KVS 4649866743 Michael Snyder, Stanford dc118f2612ab56dd261fb027849f8f33 SRA:SRR5112176 https://www.encodeproject.org/files/ENCFF447OXS/@@download/ENCFF447OXS.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released borderline replicate concordance, antibody characterized with exemption ENCFF988VIL bam unfiltered alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF562IQT, ENCFF577YSB, ENCFF807MUK 8130922880 ENCODE Processing Pipeline dbd359e415b5ac60a9cd64680f063f49 https://www.encodeproject.org/files/ENCFF988VIL/@@download/ENCFF988VIL.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF874VDD bam unfiltered alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF562IQT, ENCFF577YSB, ENCFF643CGH 8147459946 ENCODE Processing Pipeline bbf58b24549d6ad39a2e026fd902ccb3 https://www.encodeproject.org/files/ENCFF874VDD/@@download/ENCFF874VDD.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF555ZXH bam unfiltered alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF447OXS, ENCFF590KVS, ENCFF807MUK 8691479625 ENCODE Processing Pipeline a5d36d57a7da6c35fee54dde92b74c7a https://www.encodeproject.org/files/ENCFF555ZXH/@@download/ENCFF555ZXH.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF177PYK bam unfiltered alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF447OXS, ENCFF590KVS, ENCFF643CGH 8709280633 ENCODE Processing Pipeline 52116145206867a85fa4703b837dd703 https://www.encodeproject.org/files/ENCFF177PYK/@@download/ENCFF177PYK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF965EEE bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF562IQT, ENCFF577YSB, ENCFF807MUK 6142412521 ENCODE Processing Pipeline c6e158b85691cb91d62f7851adf77512 https://www.encodeproject.org/files/ENCFF965EEE/@@download/ENCFF965EEE.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF931LRP bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF562IQT, ENCFF577YSB, ENCFF643CGH 6153425914 ENCODE Processing Pipeline 624db7dcbbe084d7b34152825cbc2ea9 https://www.encodeproject.org/files/ENCFF931LRP/@@download/ENCFF931LRP.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF864YTK bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF447OXS, ENCFF590KVS, ENCFF643CGH 6490962357 ENCODE Processing Pipeline f8d4e4cb61fa8466a718476753825e54 https://www.encodeproject.org/files/ENCFF864YTK/@@download/ENCFF864YTK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF740KJR bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF447OXS, ENCFF590KVS, ENCFF807MUK 6478214419 ENCODE Processing Pipeline 55470cf8787d29776843d950a8de02fa https://www.encodeproject.org/files/ENCFF740KJR/@@download/ENCFF740KJR.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF101EHZ bigWig signal p-value ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF740KJR, ENCFF823USR 1959994335 ENCODE Processing Pipeline 16f0bfd7cea25dbf3f826d0b1e01dbb5 https://www.encodeproject.org/files/ENCFF101EHZ/@@download/ENCFF101EHZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF719IFY bigWig signal p-value ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF965EEE 1582065391 ENCODE Processing Pipeline d35644e163a7e7e3b975886a0354ed52 https://www.encodeproject.org/files/ENCFF719IFY/@@download/ENCFF719IFY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF072VTH bigWig signal p-value ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF447KVS, ENCFF740KJR, ENCFF823USR, ENCFF965EEE 2266591215 ENCODE Processing Pipeline 85888a6c65bdc6aeeacf2d931c8f9c10 https://www.encodeproject.org/files/ENCFF072VTH/@@download/ENCFF072VTH.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF342HMA bigWig fold change over control ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF740KJR, ENCFF823USR 2005882890 ENCODE Processing Pipeline ae32306d6155b89ab1fda6bae0a2f26f https://www.encodeproject.org/files/ENCFF342HMA/@@download/ENCFF342HMA.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF028EDI bigWig fold change over control ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF965EEE 1965722123 ENCODE Processing Pipeline 2633032611c0255efdaa2202040bc38d https://www.encodeproject.org/files/ENCFF028EDI/@@download/ENCFF028EDI.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF905KFJ bigWig fold change over control ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF447KVS, ENCFF740KJR, ENCFF823USR, ENCFF965EEE 2636112348 ENCODE Processing Pipeline 02932c151cfc31ff4310ad9b46d23120 https://www.encodeproject.org/files/ENCFF905KFJ/@@download/ENCFF905KFJ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF342POD bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF740KJR, ENCFF823USR 7065075 ENCODE Processing Pipeline 057bb4558006aa013316912296270fc1 https://www.encodeproject.org/files/ENCFF342POD/@@download/ENCFF342POD.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF820VNX bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF965EEE 6994783 ENCODE Processing Pipeline ac58b0e39d12400874b8ef450dcc5ddd https://www.encodeproject.org/files/ENCFF820VNX/@@download/ENCFF820VNX.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF588PWO bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF447KVS, ENCFF740KJR, ENCFF823USR, ENCFF965EEE 7460376 ENCODE Processing Pipeline a21a609cec9d624aeac9cd0c9df9df6a https://www.encodeproject.org/files/ENCFF588PWO/@@download/ENCFF588PWO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF710PIG bigBed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF342POD 11139966 ENCODE Processing Pipeline 0a038688e9563b76c6943bc741f5892c https://www.encodeproject.org/files/ENCFF710PIG/@@download/ENCFF710PIG.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF063NMQ bigBed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF820VNX 11094113 ENCODE Processing Pipeline 1ed1fb3b766ad9090f2509e80ac7afc1 https://www.encodeproject.org/files/ENCFF063NMQ/@@download/ENCFF063NMQ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF834LYT bigBed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF588PWO 11236303 ENCODE Processing Pipeline f59a44907af242a3e3fcce88b3fd0fe4 https://www.encodeproject.org/files/ENCFF834LYT/@@download/ENCFF834LYT.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF129AXO bed narrowPeak optimal idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF342POD, ENCFF588PWO, ENCFF820VNX 65925 ENCODE Processing Pipeline bb0020b88970e0f9422e3ea7aa6589dc https://www.encodeproject.org/files/ENCFF129AXO/@@download/ENCFF129AXO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF712YLR bigBed narrowPeak conservative idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF251NNX 142774 ENCODE Processing Pipeline bcaeedd2844bf3702e828b71c940c6c0 https://www.encodeproject.org/files/ENCFF712YLR/@@download/ENCFF712YLR.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF251NNX bed narrowPeak conservative idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF342POD, ENCFF588PWO, ENCFF820VNX 39609 ENCODE Processing Pipeline e297221f8cbca6698612c0e06a0d0be1 https://www.encodeproject.org/files/ENCFF251NNX/@@download/ENCFF251NNX.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF707OIL bigBed narrowPeak optimal idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF129AXO 195343 ENCODE Processing Pipeline b987073a5b1c17a4418082f1859b15ae https://www.encodeproject.org/files/ENCFF707OIL/@@download/ENCFF707OIL.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF603ULK bigWig signal p-value ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF864YTK 1778015534 ENCODE Processing Pipeline 139a5b3005b541bc49c512b421716158 https://www.encodeproject.org/files/ENCFF603ULK/@@download/ENCFF603ULK.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF598XYO bigWig signal p-value ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF864YTK, ENCFF931LRP 2248932135 ENCODE Processing Pipeline de676dc3f03e2836237fed331e4d880a https://www.encodeproject.org/files/ENCFF598XYO/@@download/ENCFF598XYO.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF050FBS bigWig signal p-value ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF931LRP 1756290929 ENCODE Processing Pipeline 025aaaeed732f5ba518e91bb26ed7e23 https://www.encodeproject.org/files/ENCFF050FBS/@@download/ENCFF050FBS.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF330NWO bigWig fold change over control ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF864YTK 1992996657 ENCODE Processing Pipeline 9b9cdce7611dfdea4ad0c0ec09b5b4b0 https://www.encodeproject.org/files/ENCFF330NWO/@@download/ENCFF330NWO.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF685DSM bigWig fold change over control ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF931LRP 1944898747 ENCODE Processing Pipeline f3e7ef66a0e6302db9dba1bd0ab981c0 https://www.encodeproject.org/files/ENCFF685DSM/@@download/ENCFF685DSM.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF239ARM bigWig fold change over control ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF864YTK, ENCFF931LRP 2618786655 ENCODE Processing Pipeline 5aeaf8ee6d252eddd10ad4c8810c6205 https://www.encodeproject.org/files/ENCFF239ARM/@@download/ENCFF239ARM.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF964MWT bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF864YTK 7019674 ENCODE Processing Pipeline 8e98e44e7c165f3835246044ad202d52 https://www.encodeproject.org/files/ENCFF964MWT/@@download/ENCFF964MWT.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF683UEN bigBed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF964MWT 11161493 ENCODE Processing Pipeline 80864295817869278520f17790b6443c https://www.encodeproject.org/files/ENCFF683UEN/@@download/ENCFF683UEN.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF955GAZ bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF931LRP 6945903 ENCODE Processing Pipeline ff159f34a9991f8d9e40250144dbdc4d https://www.encodeproject.org/files/ENCFF955GAZ/@@download/ENCFF955GAZ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF478ESD bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF864YTK, ENCFF931LRP 7472197 ENCODE Processing Pipeline 09e7da6f12d761bf1a0cf826a4fdfab2 https://www.encodeproject.org/files/ENCFF478ESD/@@download/ENCFF478ESD.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF832HAR bigBed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF955GAZ 11101894 ENCODE Processing Pipeline 8108a7dee1216e03c5331bd986f918d8 https://www.encodeproject.org/files/ENCFF832HAR/@@download/ENCFF832HAR.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF817CLT bed narrowPeak conservative idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF478ESD, ENCFF955GAZ, ENCFF964MWT 40004 ENCODE Processing Pipeline aa23c1869f84ed015d6b97a7a626b572 https://www.encodeproject.org/files/ENCFF817CLT/@@download/ENCFF817CLT.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF033KKV bigBed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF478ESD 11295160 ENCODE Processing Pipeline a5a52b5d69d6a3d5753d91b488599a41 https://www.encodeproject.org/files/ENCFF033KKV/@@download/ENCFF033KKV.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF771SAU bigBed narrowPeak conservative idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF817CLT 146252 ENCODE Processing Pipeline 051999a672b1a243eb4359aa7a97b040 https://www.encodeproject.org/files/ENCFF771SAU/@@download/ENCFF771SAU.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF247VVK bed narrowPeak optimal idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF478ESD, ENCFF955GAZ, ENCFF964MWT 66196 ENCODE Processing Pipeline 6670aee2b3c64dbb21c5188f91519a24 https://www.encodeproject.org/files/ENCFF247VVK/@@download/ENCFF247VVK.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF817VMI bigBed narrowPeak optimal idr thresholded peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF247VVK 198951 ENCODE Processing Pipeline 6f46cd00caa7dcfde1c48e5270a8eee4 https://www.encodeproject.org/files/ENCFF817VMI/@@download/ENCFF817VMI.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF510RGT fastq reads ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1956831973 Richard Myers, HAIB 17faed04c8d09c68b119e70f85ccaf99 SRA:SRR5339553 https://www.encodeproject.org/files/ENCFF510RGT/@@download/ENCFF510RGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF713JRT fastq reads ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1870040344 Richard Myers, HAIB c17b583eb892a18f871b4a41daef02d4 SRA:SRR5339552 https://www.encodeproject.org/files/ENCFF713JRT/@@download/ENCFF713JRT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF040RXW bam unfiltered alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF713JRT 2203910634 ENCODE Processing Pipeline 995a87abbafcb3b477951a27b03f41b8 https://www.encodeproject.org/files/ENCFF040RXW/@@download/ENCFF040RXW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF789PFR bam unfiltered alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF510RGT, ENCFF643CGH 2300513853 ENCODE Processing Pipeline eef2dbe1249a96f66f12a989abcb7f7a https://www.encodeproject.org/files/ENCFF789PFR/@@download/ENCFF789PFR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF466GOP bam unfiltered alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF713JRT, ENCFF807MUK 2197765239 ENCODE Processing Pipeline 95c546a347e1e70d6651c3ba32a42c63 https://www.encodeproject.org/files/ENCFF466GOP/@@download/ENCFF466GOP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045UTD bam unfiltered alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF510RGT, ENCFF807MUK 2294090072 ENCODE Processing Pipeline 626c651657f1d473b7bf0ea58a4bf7c8 https://www.encodeproject.org/files/ENCFF045UTD/@@download/ENCFF045UTD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF940MCJ bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF713JRT 1707087835 ENCODE Processing Pipeline f4e9a0d824e3098a4f51c2e8079ff939 https://www.encodeproject.org/files/ENCFF940MCJ/@@download/ENCFF940MCJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF557TWG bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF510RGT, ENCFF643CGH 1797873794 ENCODE Processing Pipeline 15fdd73d139f9fec60c5b1fb28d7a3bb https://www.encodeproject.org/files/ENCFF557TWG/@@download/ENCFF557TWG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF113NRO bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF510RGT, ENCFF807MUK 1796487817 ENCODE Processing Pipeline ffb764c332572eb9b35217495e037802 https://www.encodeproject.org/files/ENCFF113NRO/@@download/ENCFF113NRO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF991VFZ bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF713JRT, ENCFF807MUK 1705756077 ENCODE Processing Pipeline 5e9ebf01ec017cdd707b258829c6d443 https://www.encodeproject.org/files/ENCFF991VFZ/@@download/ENCFF991VFZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF096DES bigWig signal p-value ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF940MCJ 609652936 ENCODE Processing Pipeline 3b6e5ae43793f281bd2e4ecc6d16e309 https://www.encodeproject.org/files/ENCFF096DES/@@download/ENCFF096DES.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF596OCA bigWig signal p-value ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF557TWG 628072557 ENCODE Processing Pipeline af0fe1ad3e97af762955b3de1023616a https://www.encodeproject.org/files/ENCFF596OCA/@@download/ENCFF596OCA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF588BDG bigWig fold change over control ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF557TWG 605515477 ENCODE Processing Pipeline 028f17b32d9b8948b63f659e3c97b9cd https://www.encodeproject.org/files/ENCFF588BDG/@@download/ENCFF588BDG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF149HPO bigWig fold change over control ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF940MCJ 581297133 ENCODE Processing Pipeline f63a944d87d935e314441908e09307b8 https://www.encodeproject.org/files/ENCFF149HPO/@@download/ENCFF149HPO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF588TXG bigWig signal p-value ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF557TWG, ENCFF940MCJ 645843564 ENCODE Processing Pipeline 9b0caa655ac91129543dad175fa6735c https://www.encodeproject.org/files/ENCFF588TXG/@@download/ENCFF588TXG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF412CCL bigWig fold change over control ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF557TWG, ENCFF940MCJ 1012199221 ENCODE Processing Pipeline 31279e7c9892a1b7c87b00e69fef27ec https://www.encodeproject.org/files/ENCFF412CCL/@@download/ENCFF412CCL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF097JJC bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF557TWG 5720156 ENCODE Processing Pipeline 2c69f72a3501b3c9996b708011f5a04e https://www.encodeproject.org/files/ENCFF097JJC/@@download/ENCFF097JJC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF116ASD bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF940MCJ 5906026 ENCODE Processing Pipeline 393334c50b7c715c78218bab344c55e4 https://www.encodeproject.org/files/ENCFF116ASD/@@download/ENCFF116ASD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF808CAW bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF557TWG, ENCFF940MCJ 6719400 ENCODE Processing Pipeline 328f8eb6985b9d01b5ca1b75ecb95998 https://www.encodeproject.org/files/ENCFF808CAW/@@download/ENCFF808CAW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF727GHV bed narrowPeak optimal idr thresholded peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF097JJC, ENCFF116ASD, ENCFF419RSJ, ENCFF808CAW 246294 ENCODE Processing Pipeline 4d96554e24cca7b2a7c524ed116730de https://www.encodeproject.org/files/ENCFF727GHV/@@download/ENCFF727GHV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402UBG bigBed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF116ASD 13287071 ENCODE Processing Pipeline 18e63c928f205b9cfc92dc14afd0a233 https://www.encodeproject.org/files/ENCFF402UBG/@@download/ENCFF402UBG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF355NHQ bigBed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF097JJC 13221559 ENCODE Processing Pipeline 78e5f3cbe88c34ce45e5d29423663d9f https://www.encodeproject.org/files/ENCFF355NHQ/@@download/ENCFF355NHQ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF722XRV bigBed narrowPeak optimal idr thresholded peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF727GHV 460980 ENCODE Processing Pipeline 226de77d9cd538b4fd7670c92f65d00d https://www.encodeproject.org/files/ENCFF722XRV/@@download/ENCFF722XRV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF878VCV bigBed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF808CAW 13201575 ENCODE Processing Pipeline 4d22fa8329bb960cdf4c6c833be4050d https://www.encodeproject.org/files/ENCFF878VCV/@@download/ENCFF878VCV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF328KFT bigWig signal p-value ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF113NRO, ENCFF203ABR 1277492759 ENCODE Processing Pipeline 4f82c257b476ad5cfaeda51ba2aceb37 https://www.encodeproject.org/files/ENCFF328KFT/@@download/ENCFF328KFT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF326MZJ bigWig signal p-value ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF991VFZ 1190112325 ENCODE Processing Pipeline 03dc33302c1288adc7e3e549e3e32195 https://www.encodeproject.org/files/ENCFF326MZJ/@@download/ENCFF326MZJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF096UET bigWig signal p-value ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF113NRO, ENCFF203ABR, ENCFF991VFZ 1568327534 ENCODE Processing Pipeline 1070ba3af131c7794a6279e68b11f1a3 https://www.encodeproject.org/files/ENCFF096UET/@@download/ENCFF096UET.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF639OZW bigWig fold change over control ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF113NRO, ENCFF203ABR 1067860099 ENCODE Processing Pipeline d253213e38c215f46122ad9b2b989620 https://www.encodeproject.org/files/ENCFF639OZW/@@download/ENCFF639OZW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF529FBK bigWig fold change over control ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF991VFZ 1039085845 ENCODE Processing Pipeline 461a82b65bbbe51f8d51f178bd45b9f6 https://www.encodeproject.org/files/ENCFF529FBK/@@download/ENCFF529FBK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF714ZPK bigWig fold change over control ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF113NRO, ENCFF203ABR, ENCFF991VFZ 1616382469 ENCODE Processing Pipeline 2d0ebb7f779ec90f9deb65045fffd3e3 https://www.encodeproject.org/files/ENCFF714ZPK/@@download/ENCFF714ZPK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782XJB bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF113NRO, ENCFF203ABR 6566527 ENCODE Processing Pipeline a142d19851b7d191bf6d6cc4005174e4 https://www.encodeproject.org/files/ENCFF782XJB/@@download/ENCFF782XJB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF568HFI bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF991VFZ 6499368 ENCODE Processing Pipeline c8f07aa1611f4435d7510efe46b335d9 https://www.encodeproject.org/files/ENCFF568HFI/@@download/ENCFF568HFI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF920XKN bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF113NRO, ENCFF203ABR, ENCFF991VFZ 7027618 ENCODE Processing Pipeline d67e1a1942f268f4ac5182d2d1997500 https://www.encodeproject.org/files/ENCFF920XKN/@@download/ENCFF920XKN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF327PZT bigBed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF782XJB 13286611 ENCODE Processing Pipeline 58c19e2aeb240bd7fb9880f57b9e4f1e https://www.encodeproject.org/files/ENCFF327PZT/@@download/ENCFF327PZT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684WOX bigBed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF568HFI 13303362 ENCODE Processing Pipeline 726093939b9d2c729e07d484ae9057f3 https://www.encodeproject.org/files/ENCFF684WOX/@@download/ENCFF684WOX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF902AZE bigBed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF920XKN 13177183 ENCODE Processing Pipeline 885f1aa696e86fb5224488ddc425a8b4 https://www.encodeproject.org/files/ENCFF902AZE/@@download/ENCFF902AZE.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF636YLF bed narrowPeak conservative idr thresholded peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF568HFI, ENCFF782XJB, ENCFF920XKN 214514 ENCODE Processing Pipeline 6005e19b3100615d715e16a341faa858 https://www.encodeproject.org/files/ENCFF636YLF/@@download/ENCFF636YLF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF406ESR bigBed narrowPeak conservative idr thresholded peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF636YLF 425742 ENCODE Processing Pipeline 707fee66ce0f83469b49a4d2e001e9d8 https://www.encodeproject.org/files/ENCFF406ESR/@@download/ENCFF406ESR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF125NZH bed narrowPeak optimal idr thresholded peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF568HFI, ENCFF782XJB, ENCFF920XKN 216562 ENCODE Processing Pipeline eb77510343117a3f2bd682fcfae0e54d https://www.encodeproject.org/files/ENCFF125NZH/@@download/ENCFF125NZH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF046NRO bigBed narrowPeak optimal idr thresholded peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF125NZH 428099 ENCODE Processing Pipeline a8c0a9aba117a3d6c23adaabc803270d https://www.encodeproject.org/files/ENCFF046NRO/@@download/ENCFF046NRO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF104LBO fastq reads ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2252466044 Richard Myers, HAIB c5016aecc4efc8c07dcb6e658fcff703 SRA:SRR5338740 https://www.encodeproject.org/files/ENCFF104LBO/@@download/ENCFF104LBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF079HKK fastq reads ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1341793539 Richard Myers, HAIB c194e102d8155e86343780b6f840a465 SRA:SRR5338739 https://www.encodeproject.org/files/ENCFF079HKK/@@download/ENCFF079HKK.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF380EDB bam unfiltered alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079HKK, ENCFF643CGH 1492572407 ENCODE Processing Pipeline 166124972b87376c088af84aeb49cd00 https://www.encodeproject.org/files/ENCFF380EDB/@@download/ENCFF380EDB.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF954JMY bam unfiltered alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079HKK, ENCFF807MUK 1490538410 ENCODE Processing Pipeline f867143cb62cfd268fcd2e7527950aa1 https://www.encodeproject.org/files/ENCFF954JMY/@@download/ENCFF954JMY.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF077HRE bam unfiltered alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF104LBO, ENCFF643CGH 2306524121 ENCODE Processing Pipeline 7181a20085d1f12c1172710465733915 https://www.encodeproject.org/files/ENCFF077HRE/@@download/ENCFF077HRE.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF113ZJZ bam unfiltered alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF104LBO, ENCFF807MUK 2302998033 ENCODE Processing Pipeline f36356155832721cee9b842bc6a850fb https://www.encodeproject.org/files/ENCFF113ZJZ/@@download/ENCFF113ZJZ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF266WEU bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079HKK, ENCFF807MUK 1094047767 ENCODE Processing Pipeline fe9e4e03de9dd3359a7617176e6b2499 https://www.encodeproject.org/files/ENCFF266WEU/@@download/ENCFF266WEU.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF700ZPS bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079HKK, ENCFF643CGH 1094508671 ENCODE Processing Pipeline bffc1dcc18fe208b6eed3e189c87cc82 https://www.encodeproject.org/files/ENCFF700ZPS/@@download/ENCFF700ZPS.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF731EZN bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF104LBO, ENCFF643CGH 1328334836 ENCODE Processing Pipeline e854bf86eebeff0f1d4d8fa32951423a https://www.encodeproject.org/files/ENCFF731EZN/@@download/ENCFF731EZN.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF462CGH bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF104LBO, ENCFF807MUK 1327560380 ENCODE Processing Pipeline 67f6cc38b26fe696b5567676f02dbba0 https://www.encodeproject.org/files/ENCFF462CGH/@@download/ENCFF462CGH.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF653OBK bigWig signal p-value ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF700ZPS 476629867 ENCODE Processing Pipeline e2b94e19f6cdded76a772fbd010966d3 https://www.encodeproject.org/files/ENCFF653OBK/@@download/ENCFF653OBK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF499DNY bigWig signal p-value ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF700ZPS, ENCFF731EZN 657405608 ENCODE Processing Pipeline 80beb6135fd753424085de14ad3232f5 https://www.encodeproject.org/files/ENCFF499DNY/@@download/ENCFF499DNY.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF517XPS bigWig fold change over control ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF700ZPS 438751933 ENCODE Processing Pipeline 3113dfc261a03bde1cea81cbba2eb441 https://www.encodeproject.org/files/ENCFF517XPS/@@download/ENCFF517XPS.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF629OYH bigWig signal p-value ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF731EZN 602566254 ENCODE Processing Pipeline babadde800314d1e01c72685083d563d https://www.encodeproject.org/files/ENCFF629OYH/@@download/ENCFF629OYH.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF166DJT bigWig fold change over control ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF731EZN 500685023 ENCODE Processing Pipeline d2dba90b72f6804cc848490791e49324 https://www.encodeproject.org/files/ENCFF166DJT/@@download/ENCFF166DJT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF556AXQ bigWig fold change over control ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF700ZPS, ENCFF731EZN 787431378 ENCODE Processing Pipeline e94b997a10f57649610b741855c1a806 https://www.encodeproject.org/files/ENCFF556AXQ/@@download/ENCFF556AXQ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF309FWP bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF700ZPS 6099570 ENCODE Processing Pipeline ab7ac684b978b45474d715d38fc9afc3 https://www.encodeproject.org/files/ENCFF309FWP/@@download/ENCFF309FWP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF815OFB bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF731EZN 6750490 ENCODE Processing Pipeline 636059d3183d63e75f8374903f508d2a https://www.encodeproject.org/files/ENCFF815OFB/@@download/ENCFF815OFB.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF442MTJ bigBed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF796JXJ 12603786 ENCODE Processing Pipeline af3e4cecddcac0b4dd57898423250810 https://www.encodeproject.org/files/ENCFF442MTJ/@@download/ENCFF442MTJ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF472UCD bigBed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF309FWP 12953524 ENCODE Processing Pipeline 711de442dcfc7dd087d06cc0f70bc96f https://www.encodeproject.org/files/ENCFF472UCD/@@download/ENCFF472UCD.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF723WQN bigBed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF815OFB 12477506 ENCODE Processing Pipeline 89130531e7d49d1b78330edc7cd85226 https://www.encodeproject.org/files/ENCFF723WQN/@@download/ENCFF723WQN.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF796JXJ bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF700ZPS, ENCFF731EZN 6980923 ENCODE Processing Pipeline 1f48bb78e11c286c9fe444630c437596 https://www.encodeproject.org/files/ENCFF796JXJ/@@download/ENCFF796JXJ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF882PRQ bed narrowPeak conservative idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF309FWP, ENCFF419RSJ, ENCFF796JXJ, ENCFF815OFB 528086 ENCODE Processing Pipeline d34382b75d753b17e1530f12e6db22be https://www.encodeproject.org/files/ENCFF882PRQ/@@download/ENCFF882PRQ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF627ZUO bigBed narrowPeak conservative idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF882PRQ 1239072 ENCODE Processing Pipeline 65a636697b53c90aee970315cb10733c https://www.encodeproject.org/files/ENCFF627ZUO/@@download/ENCFF627ZUO.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF635OBU bigBed narrowPeak optimal idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF744IUB 1593531 ENCODE Processing Pipeline ec310464edd533f6fcae65795f291589 https://www.encodeproject.org/files/ENCFF635OBU/@@download/ENCFF635OBU.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF744IUB bed narrowPeak optimal idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF309FWP, ENCFF419RSJ, ENCFF796JXJ, ENCFF815OFB 718635 ENCODE Processing Pipeline 5f957550161e58b2f87473f0e0cdf9d5 https://www.encodeproject.org/files/ENCFF744IUB/@@download/ENCFF744IUB.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF666ZBL bigWig signal p-value ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF462CGH 1179959961 ENCODE Processing Pipeline 813a7844b47c297fd5ea8a2430498594 https://www.encodeproject.org/files/ENCFF666ZBL/@@download/ENCFF666ZBL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF529DWP bigWig signal p-value ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF266WEU 1200407551 ENCODE Processing Pipeline 2d4f9dd8ca4e16f14788cb225a4b1b14 https://www.encodeproject.org/files/ENCFF529DWP/@@download/ENCFF529DWP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF315YUC bigWig signal p-value ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF266WEU, ENCFF462CGH 1581935045 ENCODE Processing Pipeline a474e0b180e95d0e6c46d879a3f6a287 https://www.encodeproject.org/files/ENCFF315YUC/@@download/ENCFF315YUC.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF013UOW bigWig fold change over control ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF266WEU 823323735 ENCODE Processing Pipeline 226509409c6b9a8fadc5d092d3661958 https://www.encodeproject.org/files/ENCFF013UOW/@@download/ENCFF013UOW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF611BWT bigWig fold change over control ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF462CGH 979983366 ENCODE Processing Pipeline bac8f9c64f271d9d36ee93ac357a58b6 https://www.encodeproject.org/files/ENCFF611BWT/@@download/ENCFF611BWT.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF613JIZ bigWig fold change over control ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF266WEU, ENCFF462CGH 1363802997 ENCODE Processing Pipeline 92237e69afd6f9cbf7618d108e72bb16 https://www.encodeproject.org/files/ENCFF613JIZ/@@download/ENCFF613JIZ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF375BJW bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF462CGH 6930500 ENCODE Processing Pipeline 41dad94b847528dce40daaaf72e39dd3 https://www.encodeproject.org/files/ENCFF375BJW/@@download/ENCFF375BJW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF072FFV bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF266WEU 6563094 ENCODE Processing Pipeline a7be5bebea49db48046ddbd54fcef2e2 https://www.encodeproject.org/files/ENCFF072FFV/@@download/ENCFF072FFV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF625FHX bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF266WEU, ENCFF462CGH 7031087 ENCODE Processing Pipeline 7aaa6ad4b29bb1972ac181255c0a6d67 https://www.encodeproject.org/files/ENCFF625FHX/@@download/ENCFF625FHX.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF836GXI bigBed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF072FFV 12847150 ENCODE Processing Pipeline 8a34ce44bf1d1143928a7a3715b4b9fb https://www.encodeproject.org/files/ENCFF836GXI/@@download/ENCFF836GXI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF543JMS bigBed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF625FHX 12484016 ENCODE Processing Pipeline 6f49931a5fb71e8eb6847674f9c35742 https://www.encodeproject.org/files/ENCFF543JMS/@@download/ENCFF543JMS.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF623IXJ bigBed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF375BJW 12282833 ENCODE Processing Pipeline ccdd5858a72448be99123989c2e29247 https://www.encodeproject.org/files/ENCFF623IXJ/@@download/ENCFF623IXJ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF984GAR bed narrowPeak conservative idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF072FFV, ENCFF375BJW, ENCFF625FHX 556633 ENCODE Processing Pipeline 3796824bd193a66312dfd73c9d79e28a https://www.encodeproject.org/files/ENCFF984GAR/@@download/ENCFF984GAR.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF804MOQ bed narrowPeak optimal idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF072FFV, ENCFF375BJW, ENCFF625FHX 724401 ENCODE Processing Pipeline 984433876181a9d2f67ba18a34ab4cbb https://www.encodeproject.org/files/ENCFF804MOQ/@@download/ENCFF804MOQ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF816DFM bigBed narrowPeak conservative idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF984GAR 1262732 ENCODE Processing Pipeline f33c38b3330989ca1a65149bb2cb9823 https://www.encodeproject.org/files/ENCFF816DFM/@@download/ENCFF816DFM.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF399FBI bigBed narrowPeak optimal idr thresholded peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF804MOQ 1590342 ENCODE Processing Pipeline f778804602aec5cf10cf475e3be30c62 https://www.encodeproject.org/files/ENCFF399FBI/@@download/ENCFF399FBI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF174QLC fastq reads ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1325236553 Richard Myers, HAIB d8f2e4094f2774251d0f1f6e747ebe63 SRA:SRR5338940 https://www.encodeproject.org/files/ENCFF174QLC/@@download/ENCFF174QLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF256YDZ fastq reads ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2346491369 Richard Myers, HAIB 358bc9c9d6dc38c2168a06ea7dbecfcb SRA:SRR5338939 https://www.encodeproject.org/files/ENCFF256YDZ/@@download/ENCFF256YDZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF406PEZ bam unfiltered alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF256YDZ, ENCFF643CGH 2641729437 ENCODE Processing Pipeline dfd95c835025fa2d7c98082c1201a494 https://www.encodeproject.org/files/ENCFF406PEZ/@@download/ENCFF406PEZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF885CDH bam unfiltered alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF174QLC, ENCFF643CGH 1571280290 ENCODE Processing Pipeline eb9c301b30fc1a1e06cb6fa547b04651 https://www.encodeproject.org/files/ENCFF885CDH/@@download/ENCFF885CDH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF267MKV bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF256YDZ, ENCFF643CGH 1953996320 ENCODE Processing Pipeline f8ae6d21b815b0d3139f6a170ad8db10 https://www.encodeproject.org/files/ENCFF267MKV/@@download/ENCFF267MKV.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF049BHT bam unfiltered alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF174QLC, ENCFF807MUK 1568078525 ENCODE Processing Pipeline 9261c8bc282597afbf571c7325f9efb7 https://www.encodeproject.org/files/ENCFF049BHT/@@download/ENCFF049BHT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF644DWE bam unfiltered alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF256YDZ, ENCFF807MUK 2637445793 ENCODE Processing Pipeline 5ef0c97d1eda8bfec5c6a0a2cb15f32d https://www.encodeproject.org/files/ENCFF644DWE/@@download/ENCFF644DWE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF239UPK bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF174QLC, ENCFF807MUK 1201974759 ENCODE Processing Pipeline 004defd28e7def5f545e85845a098377 https://www.encodeproject.org/files/ENCFF239UPK/@@download/ENCFF239UPK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF728BHH bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF174QLC, ENCFF643CGH 1202455121 ENCODE Processing Pipeline 5b9d63e6c3fc57213d98c95f38bd82c7 https://www.encodeproject.org/files/ENCFF728BHH/@@download/ENCFF728BHH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF953XVS bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF256YDZ, ENCFF807MUK 1953334743 ENCODE Processing Pipeline 9923b41f81bf28a2a869eb2b5c669148 https://www.encodeproject.org/files/ENCFF953XVS/@@download/ENCFF953XVS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF519WAO bigWig signal p-value ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF728BHH 467714372 ENCODE Processing Pipeline 236df3c813a9c17b49ada2c1e9c81325 https://www.encodeproject.org/files/ENCFF519WAO/@@download/ENCFF519WAO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF485CXQ bigWig signal p-value ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF267MKV 674484841 ENCODE Processing Pipeline 5e3e36e4f8179848391aa2fccb1a814f https://www.encodeproject.org/files/ENCFF485CXQ/@@download/ENCFF485CXQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF146WAO bigWig signal p-value ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF267MKV, ENCFF728BHH 678702476 ENCODE Processing Pipeline dabedaeed20966d27f9de911028e4058 https://www.encodeproject.org/files/ENCFF146WAO/@@download/ENCFF146WAO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF561OIV bigWig fold change over control ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF728BHH 460339938 ENCODE Processing Pipeline e010e1fb07b9ebc7a585fc87081bb95b https://www.encodeproject.org/files/ENCFF561OIV/@@download/ENCFF561OIV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF299OIZ bigWig fold change over control ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF267MKV 686277556 ENCODE Processing Pipeline 2252d3b38acce4e37ad9f4e4c3704d8c https://www.encodeproject.org/files/ENCFF299OIZ/@@download/ENCFF299OIZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF697IBR bigWig fold change over control ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF267MKV, ENCFF728BHH 948998685 ENCODE Processing Pipeline 88c48663eae6332da586080db01ab6b5 https://www.encodeproject.org/files/ENCFF697IBR/@@download/ENCFF697IBR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF103JQF bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF728BHH 5720115 ENCODE Processing Pipeline 5f5a171572e4d02f1aaabaef5dba4f22 https://www.encodeproject.org/files/ENCFF103JQF/@@download/ENCFF103JQF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF545VLB bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF267MKV 6486761 ENCODE Processing Pipeline 9f8df56cd41a55d69c97be73e2dc5fe1 https://www.encodeproject.org/files/ENCFF545VLB/@@download/ENCFF545VLB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF166XNP bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF267MKV, ENCFF728BHH 6752006 ENCODE Processing Pipeline ebfcbf0512d7674c4fe0d7dcc3c06d0a https://www.encodeproject.org/files/ENCFF166XNP/@@download/ENCFF166XNP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF540QOS bigBed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF103JQF 13036485 ENCODE Processing Pipeline 0477510f3f11b976bce5227f5c6cec10 https://www.encodeproject.org/files/ENCFF540QOS/@@download/ENCFF540QOS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF864PNC bigBed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF545VLB 13034304 ENCODE Processing Pipeline 88feb0b4a4e2893cc9e0c6fc27e4306f https://www.encodeproject.org/files/ENCFF864PNC/@@download/ENCFF864PNC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF024NIL bed narrowPeak conservative idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF103JQF, ENCFF166XNP, ENCFF419RSJ, ENCFF545VLB 595775 ENCODE Processing Pipeline b81f74043381c917aba219cf066feae6 https://www.encodeproject.org/files/ENCFF024NIL/@@download/ENCFF024NIL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF941SQA bigBed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF166XNP 12929887 ENCODE Processing Pipeline b3cdb19b9fa20d3562c1f3659ddb67a1 https://www.encodeproject.org/files/ENCFF941SQA/@@download/ENCFF941SQA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF638RFS bigBed narrowPeak conservative idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF024NIL 1142073 ENCODE Processing Pipeline f7d2cbe39201a1ad41a001400be8fddb https://www.encodeproject.org/files/ENCFF638RFS/@@download/ENCFF638RFS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF096AKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF499COS 1279925 ENCODE Processing Pipeline 4fa8bda310a72db9c8548f10e140be27 https://www.encodeproject.org/files/ENCFF096AKJ/@@download/ENCFF096AKJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF499COS bed narrowPeak optimal idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF103JQF, ENCFF166XNP, ENCFF419RSJ, ENCFF545VLB 690676 ENCODE Processing Pipeline 6b480f0dc3dc535d170d81e295f2519c https://www.encodeproject.org/files/ENCFF499COS/@@download/ENCFF499COS.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF370UZS bigWig signal p-value ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF953XVS 1497784584 ENCODE Processing Pipeline b75258a32b87bc1f899a2cf4ebcb02ed https://www.encodeproject.org/files/ENCFF370UZS/@@download/ENCFF370UZS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF741HKA bigWig signal p-value ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239UPK 1313800268 ENCODE Processing Pipeline d16a4f8d773fa51b22ed6b6c95e8378c https://www.encodeproject.org/files/ENCFF741HKA/@@download/ENCFF741HKA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF784JQF bigWig signal p-value ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF239UPK, ENCFF953XVS 1415893557 ENCODE Processing Pipeline 2d16ce966400262d6d58c223d01b5012 https://www.encodeproject.org/files/ENCFF784JQF/@@download/ENCFF784JQF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF798LZN bigWig fold change over control ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239UPK 891109704 ENCODE Processing Pipeline 0b958c6d56bb1940e3171af1e1119c04 https://www.encodeproject.org/files/ENCFF798LZN/@@download/ENCFF798LZN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF748XNB bigWig fold change over control ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF953XVS 1234136628 ENCODE Processing Pipeline 81558a205c88fd3d04f0ea3dfab5de82 https://www.encodeproject.org/files/ENCFF748XNB/@@download/ENCFF748XNB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF083BFM bigWig fold change over control ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF239UPK, ENCFF953XVS 1571027045 ENCODE Processing Pipeline 019e97dee3f1116813e32e3997316846 https://www.encodeproject.org/files/ENCFF083BFM/@@download/ENCFF083BFM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF297JID bigBed narrowPeak conservative idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF067GOU 1208470 ENCODE Processing Pipeline 48e0e2a202232fb7f89cfe61434d9347 https://www.encodeproject.org/files/ENCFF297JID/@@download/ENCFF297JID.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF940DWZ bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239UPK 6413631 ENCODE Processing Pipeline 5f1784ff3f713b9e9b6c7e8d362d47e5 https://www.encodeproject.org/files/ENCFF940DWZ/@@download/ENCFF940DWZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF722QWB bigBed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF887FOA 12985504 ENCODE Processing Pipeline d14509b7dc6a1c32fb51653e1beb51c0 https://www.encodeproject.org/files/ENCFF722QWB/@@download/ENCFF722QWB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF021GNS bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF953XVS 6788346 ENCODE Processing Pipeline 2b634e363e2df18273d0829fe2291a16 https://www.encodeproject.org/files/ENCFF021GNS/@@download/ENCFF021GNS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887FOA bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF239UPK, ENCFF953XVS 6975816 ENCODE Processing Pipeline 02ffbf46119471a7efb2a95a42494ffa https://www.encodeproject.org/files/ENCFF887FOA/@@download/ENCFF887FOA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF146QEU bigBed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF940DWZ 13121509 ENCODE Processing Pipeline 99c547317853ae5a82b9fdc5913e3ff9 https://www.encodeproject.org/files/ENCFF146QEU/@@download/ENCFF146QEU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF637ZFU bigBed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF021GNS 12863150 ENCODE Processing Pipeline 1d1f3b0aad6704c74014f92a23d1e874 https://www.encodeproject.org/files/ENCFF637ZFU/@@download/ENCFF637ZFU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF067GOU bed narrowPeak conservative idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF021GNS, ENCFF887FOA, ENCFF940DWZ 605358 ENCODE Processing Pipeline d229a8cb697e549192a9908d92ac4b67 https://www.encodeproject.org/files/ENCFF067GOU/@@download/ENCFF067GOU.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF314KAP bigBed narrowPeak optimal idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF136JTZ 1340658 ENCODE Processing Pipeline 28dd135036cb839d5d9234f812249e22 https://www.encodeproject.org/files/ENCFF314KAP/@@download/ENCFF314KAP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF136JTZ bed narrowPeak optimal idr thresholded peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF021GNS, ENCFF887FOA, ENCFF940DWZ 696373 ENCODE Processing Pipeline 36eda2d11365ed6799dfc348a90c33d6 https://www.encodeproject.org/files/ENCFF136JTZ/@@download/ENCFF136JTZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF196SPG fastq reads ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF506HHD 2304258104 Michael Snyder, Stanford afa579310ff1dd7a02f90334fee4d9dd SRA:SRR6214154 https://www.encodeproject.org/files/ENCFF196SPG/@@download/ENCFF196SPG.fastq.gz Illumina HiSeq 4000 /files/ENCFF229TOU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF506HHD fastq reads ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF196SPG 2692007551 Michael Snyder, Stanford 3aa55feb2b03eae535a65d5752e0edea SRA:SRR6214154 https://www.encodeproject.org/files/ENCFF506HHD/@@download/ENCFF506HHD.fastq.gz Illumina HiSeq 4000 /files/ENCFF546DKA/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF815WDC bam unfiltered alignments ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF196SPG, ENCFF506HHD, ENCFF643CGH 4531681213 ENCODE Processing Pipeline 1e9541390257ae44f4a4c4f20b2eea34 https://www.encodeproject.org/files/ENCFF815WDC/@@download/ENCFF815WDC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF686NWU bam alignments ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF196SPG, ENCFF506HHD, ENCFF643CGH 3358648811 ENCODE Processing Pipeline 3dda5fbbbeb34aeef1ecbb359a7dc436 https://www.encodeproject.org/files/ENCFF686NWU/@@download/ENCFF686NWU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF719MVK bam unfiltered alignments ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF196SPG, ENCFF506HHD, ENCFF807MUK 4528024325 ENCODE Processing Pipeline 5e72eb08c142e2ffa648003cf6831a76 https://www.encodeproject.org/files/ENCFF719MVK/@@download/ENCFF719MVK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF446KCO bam alignments ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF196SPG, ENCFF506HHD, ENCFF807MUK 3355797828 ENCODE Processing Pipeline d5e913cfe1bd7f2bf3ee43b18ac97c61 https://www.encodeproject.org/files/ENCFF446KCO/@@download/ENCFF446KCO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF727YAV bigWig signal p-value ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF446KCO, ENCFF667NBG 1059908549 ENCODE Processing Pipeline 5bf996b730fa788bf15533e0051cd5b0 https://www.encodeproject.org/files/ENCFF727YAV/@@download/ENCFF727YAV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF398VGB bed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF446KCO, ENCFF667NBG 6453063 ENCODE Processing Pipeline a7c0fedf24ba4507e174641879f1a881 https://www.encodeproject.org/files/ENCFF398VGB/@@download/ENCFF398VGB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF401DFB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF398VGB 491150 ENCODE Processing Pipeline f2d354244aac6561aaf810112b904fe9 https://www.encodeproject.org/files/ENCFF401DFB/@@download/ENCFF401DFB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF503RZZ bigWig fold change over control ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF446KCO, ENCFF667NBG 1236971624 ENCODE Processing Pipeline a1984462c0975381b9a6e4931488394e https://www.encodeproject.org/files/ENCFF503RZZ/@@download/ENCFF503RZZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF354OBC bigBed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF398VGB 11514071 ENCODE Processing Pipeline f44f1a2c06d75a9d64e4f9f62eed36f0 https://www.encodeproject.org/files/ENCFF354OBC/@@download/ENCFF354OBC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF901OUV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF401DFB 944199 ENCODE Processing Pipeline 987e89caff478f4984aa63e519dd22fc https://www.encodeproject.org/files/ENCFF901OUV/@@download/ENCFF901OUV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF455YHL bigWig fold change over control ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF686NWU, ENCFF797ERZ 1244740912 ENCODE Processing Pipeline 4402698306a67e7196188100eff76f68 https://www.encodeproject.org/files/ENCFF455YHL/@@download/ENCFF455YHL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF555BRJ bed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF686NWU, ENCFF797ERZ 6459146 ENCODE Processing Pipeline 3c1ea78b7c391137d6087e2d8462c0b1 https://www.encodeproject.org/files/ENCFF555BRJ/@@download/ENCFF555BRJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF780KMI bigBed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF555BRJ 11529750 ENCODE Processing Pipeline 5b2e28ed9abc8838dec178ec6c7d4d86 https://www.encodeproject.org/files/ENCFF780KMI/@@download/ENCFF780KMI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF037JUM bigWig signal p-value ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF686NWU, ENCFF797ERZ 1049713429 ENCODE Processing Pipeline 5721e1c66f7ccbe0a6ec0601dbb2d1b1 https://www.encodeproject.org/files/ENCFF037JUM/@@download/ENCFF037JUM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF026ZWL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF555BRJ 486155 ENCODE Processing Pipeline fd432cfc247ed205e9108572ec4479cb https://www.encodeproject.org/files/ENCFF026ZWL/@@download/ENCFF026ZWL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF649JRE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF026ZWL 939466 ENCODE Processing Pipeline 8a28d468742cfea43f26f0b64bc53307 https://www.encodeproject.org/files/ENCFF649JRE/@@download/ENCFF649JRE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF215ZIX bam unfiltered alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 100 ENCFF371HTE, ENCFF563WER, ENCFF807MUK 4840943755 ENCODE Processing Pipeline f8feafff8b982e420e5b2755e10b3fa6 https://www.encodeproject.org/files/ENCFF215ZIX/@@download/ENCFF215ZIX.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF617KPE bam unfiltered alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 100 ENCFF233LBL, ENCFF724EXA, ENCFF807MUK 4669054473 ENCODE Processing Pipeline 056393e91aae4dcd193fe3dece9a8f65 https://www.encodeproject.org/files/ENCFF617KPE/@@download/ENCFF617KPE.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF563WER fastq reads ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF371HTE 2149574523 Michael Snyder, Stanford 4006b883d2d3391fbb21b6897fe1f60c SRA:SRR5111124 https://www.encodeproject.org/files/ENCFF563WER/@@download/ENCFF563WER.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance, antibody characterized with exemption ENCFF371HTE fastq reads ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF563WER 2212935614 Michael Snyder, Stanford 846cfd23ba90ff9cedf99eef813f21bf SRA:SRR5111124 https://www.encodeproject.org/files/ENCFF371HTE/@@download/ENCFF371HTE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance, antibody characterized with exemption ENCFF724EXA fastq reads ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF233LBL 2127392760 Michael Snyder, Stanford 0cef04c38d860b7e61988497d529b7cc SRA:SRR5111125 https://www.encodeproject.org/files/ENCFF724EXA/@@download/ENCFF724EXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance, antibody characterized with exemption ENCFF233LBL fastq reads ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF724EXA 2065215922 Michael Snyder, Stanford 3b0d021b63d3ca87c9c331098c18d529 SRA:SRR5111125 https://www.encodeproject.org/files/ENCFF233LBL/@@download/ENCFF233LBL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance, antibody characterized with exemption ENCFF100EAO bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 100 ENCFF233LBL, ENCFF724EXA, ENCFF807MUK 3952010045 ENCODE Processing Pipeline 2c85007c19923cf09195be9c0f4e822d https://www.encodeproject.org/files/ENCFF100EAO/@@download/ENCFF100EAO.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF965CLW bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 100 ENCFF371HTE, ENCFF563WER, ENCFF807MUK 4199304381 ENCODE Processing Pipeline 1e86e9ab5927d084ee3438d8f412f0d8 https://www.encodeproject.org/files/ENCFF965CLW/@@download/ENCFF965CLW.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF529JSY bigWig signal p-value ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF100EAO, ENCFF583FAG 970087128 ENCODE Processing Pipeline e4a8a037de415fecf96b591210b67726 https://www.encodeproject.org/files/ENCFF529JSY/@@download/ENCFF529JSY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF694KWG bigWig signal p-value ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF965CLW 1242079238 ENCODE Processing Pipeline da2d61e954eeb2d907adf0109b5f520c https://www.encodeproject.org/files/ENCFF694KWG/@@download/ENCFF694KWG.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF712KGZ bigWig signal p-value ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF049MPQ, ENCFF100EAO, ENCFF583FAG, ENCFF965CLW 1962814233 ENCODE Processing Pipeline 15ed6624a2ab539cf407812173602f78 https://www.encodeproject.org/files/ENCFF712KGZ/@@download/ENCFF712KGZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF256MDY bigWig fold change over control ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF100EAO, ENCFF583FAG 1021991926 ENCODE Processing Pipeline 9cd1ae15f4ec2982cd70bc7c02e45167 https://www.encodeproject.org/files/ENCFF256MDY/@@download/ENCFF256MDY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF901HSB bigWig fold change over control ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF965CLW 1114422116 ENCODE Processing Pipeline e449d2da80cb472a5d187f1b60af0154 https://www.encodeproject.org/files/ENCFF901HSB/@@download/ENCFF901HSB.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF396ZVZ bigWig fold change over control ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF049MPQ, ENCFF100EAO, ENCFF583FAG, ENCFF965CLW 1969121674 ENCODE Processing Pipeline 5893ef679f7e83e7947affdfacde0b5c https://www.encodeproject.org/files/ENCFF396ZVZ/@@download/ENCFF396ZVZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF890CUC bigBed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF454VVC 13204587 ENCODE Processing Pipeline 89a3e75e66006a8283bc944370d19477 https://www.encodeproject.org/files/ENCFF890CUC/@@download/ENCFF890CUC.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF517DCO bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF100EAO, ENCFF583FAG 6182723 ENCODE Processing Pipeline 9c925ac476a6a170bdb6a98588c00da0 https://www.encodeproject.org/files/ENCFF517DCO/@@download/ENCFF517DCO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF669TVR bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF965CLW 6305494 ENCODE Processing Pipeline 121da7a2bbfcddf37cdbc51915df2bac https://www.encodeproject.org/files/ENCFF669TVR/@@download/ENCFF669TVR.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF695SVQ bigBed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF517DCO 11169031 ENCODE Processing Pipeline ed7136362016de70cc14a57f299bf9ac https://www.encodeproject.org/files/ENCFF695SVQ/@@download/ENCFF695SVQ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF051JAE bed narrowPeak optimal idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF454VVC, ENCFF517DCO, ENCFF669TVR 82712 ENCODE Processing Pipeline 8a2fc35aff0d987b23d18f62f4c51018 https://www.encodeproject.org/files/ENCFF051JAE/@@download/ENCFF051JAE.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF596TVX bigBed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF669TVR 11107045 ENCODE Processing Pipeline c8d4ebe6f400f7d7020e5044b4bfc3c4 https://www.encodeproject.org/files/ENCFF596TVX/@@download/ENCFF596TVX.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF454VVC bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF049MPQ, ENCFF100EAO, ENCFF583FAG, ENCFF965CLW 7154652 ENCODE Processing Pipeline 955a5135c4dbcd6ee65395fc3b4f0ff6 https://www.encodeproject.org/files/ENCFF454VVC/@@download/ENCFF454VVC.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF565PCQ bigBed narrowPeak conservative idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF668ECR 144617 ENCODE Processing Pipeline 0813cb55901b9a0e5e8bc2082f8a2dad https://www.encodeproject.org/files/ENCFF565PCQ/@@download/ENCFF565PCQ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF668ECR bed narrowPeak conservative idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF454VVC, ENCFF517DCO, ENCFF669TVR 38366 ENCODE Processing Pipeline 26ba8d5a446de5c053cee3bb2c4b8a82 https://www.encodeproject.org/files/ENCFF668ECR/@@download/ENCFF668ECR.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF209EVA bigBed narrowPeak optimal idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051JAE 228260 ENCODE Processing Pipeline 175329b1fea53dc9f6cec015b0bd55c4 https://www.encodeproject.org/files/ENCFF209EVA/@@download/ENCFF209EVA.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF844SGC bam unfiltered alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 100 ENCFF233LBL, ENCFF643CGH, ENCFF724EXA 4677585319 ENCODE Processing Pipeline f7d91668c014016442a2d8c86a25b8d8 https://www.encodeproject.org/files/ENCFF844SGC/@@download/ENCFF844SGC.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF866FUF bam unfiltered alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 100 ENCFF371HTE, ENCFF563WER, ENCFF643CGH 4851500322 ENCODE Processing Pipeline b7b23caa1b061c24f2d497b563f71e0f https://www.encodeproject.org/files/ENCFF866FUF/@@download/ENCFF866FUF.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF796TBS bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 100 ENCFF233LBL, ENCFF643CGH, ENCFF724EXA 3957492752 ENCODE Processing Pipeline dd120880d1b1dae18d2d291dce87c290 https://www.encodeproject.org/files/ENCFF796TBS/@@download/ENCFF796TBS.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF116HSG bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 100 ENCFF371HTE, ENCFF563WER, ENCFF643CGH 4204679163 ENCODE Processing Pipeline e44f5b1e6cd480e392f15e2639e24544 https://www.encodeproject.org/files/ENCFF116HSG/@@download/ENCFF116HSG.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF720JMB bigWig signal p-value ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF426RDP, ENCFF796TBS 916830198 ENCODE Processing Pipeline eae87f08d58e37ea01bf7c6c17039d76 https://www.encodeproject.org/files/ENCFF720JMB/@@download/ENCFF720JMB.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF015XFH bigWig signal p-value ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF116HSG, ENCFF291AFY 1061588891 ENCODE Processing Pipeline 4581c4ce8778f8172ac1d171f01bf400 https://www.encodeproject.org/files/ENCFF015XFH/@@download/ENCFF015XFH.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF680TRU bigWig signal p-value ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF116HSG, ENCFF291AFY, ENCFF426RDP, ENCFF796TBS 1668962342 ENCODE Processing Pipeline 68a6c7e8368dbcbb1136e4b1498e6dc7 https://www.encodeproject.org/files/ENCFF680TRU/@@download/ENCFF680TRU.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF849GIN bigWig fold change over control ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF426RDP, ENCFF796TBS 1030653999 ENCODE Processing Pipeline befadf9714f695439c77ccd3e92c8871 https://www.encodeproject.org/files/ENCFF849GIN/@@download/ENCFF849GIN.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF465CNH bigWig fold change over control ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF116HSG, ENCFF291AFY 1111746480 ENCODE Processing Pipeline a5bdca59db9b354dcd09607f1f72bd9c https://www.encodeproject.org/files/ENCFF465CNH/@@download/ENCFF465CNH.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF742SOT bigWig fold change over control ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF116HSG, ENCFF291AFY, ENCFF426RDP, ENCFF796TBS 1978633150 ENCODE Processing Pipeline fa1db7dda5ec740bf4f9dee5f9a954a6 https://www.encodeproject.org/files/ENCFF742SOT/@@download/ENCFF742SOT.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF942FKX bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF426RDP, ENCFF796TBS 6021371 ENCODE Processing Pipeline da43a61976b79b9a370aa6fbf4af0a9f https://www.encodeproject.org/files/ENCFF942FKX/@@download/ENCFF942FKX.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF790GCN bigBed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF942FKX 11173355 ENCODE Processing Pipeline 63f863fe50dd5b210e5f02d3d6833817 https://www.encodeproject.org/files/ENCFF790GCN/@@download/ENCFF790GCN.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF739ZCI bigBed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF916GDQ 11105328 ENCODE Processing Pipeline afff41908faf298f50c814a55243aca2 https://www.encodeproject.org/files/ENCFF739ZCI/@@download/ENCFF739ZCI.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF078JOU bigBed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF576KEA 13223824 ENCODE Processing Pipeline e3b85e2f861e06267cf65fe2cd09c5e9 https://www.encodeproject.org/files/ENCFF078JOU/@@download/ENCFF078JOU.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF916GDQ bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF116HSG, ENCFF291AFY 6070901 ENCODE Processing Pipeline 33c7a878468a65e06c7065a75ffa5da2 https://www.encodeproject.org/files/ENCFF916GDQ/@@download/ENCFF916GDQ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF576KEA bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF116HSG, ENCFF291AFY, ENCFF426RDP, ENCFF796TBS 7109283 ENCODE Processing Pipeline 5d713259fe25e0761c0683e8998331e5 https://www.encodeproject.org/files/ENCFF576KEA/@@download/ENCFF576KEA.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF604BWL bigBed narrowPeak conservative idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF137HKJ 149717 ENCODE Processing Pipeline 5ced6ef98a92ef6123d406e9c9ad9388 https://www.encodeproject.org/files/ENCFF604BWL/@@download/ENCFF604BWL.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF621ZSK bed narrowPeak optimal idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF576KEA, ENCFF916GDQ, ENCFF942FKX 82157 ENCODE Processing Pipeline f89d49d9e8062a1de1001268bf6bb598 https://www.encodeproject.org/files/ENCFF621ZSK/@@download/ENCFF621ZSK.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF508LAM bigBed narrowPeak optimal idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF621ZSK 231321 ENCODE Processing Pipeline cc2160ca8ee70e0931c147a80e352c0e https://www.encodeproject.org/files/ENCFF508LAM/@@download/ENCFF508LAM.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF137HKJ bed narrowPeak conservative idr thresholded peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF576KEA, ENCFF916GDQ, ENCFF942FKX 40058 ENCODE Processing Pipeline 69fb11175a1178abd70593353c8dff82 https://www.encodeproject.org/files/ENCFF137HKJ/@@download/ENCFF137HKJ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF994KPK fastq reads ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 959469033 Xiang-Dong Fu, UCSD 3d45d674044bdfa5439c20daf160fac5 SRA:SRR6213546 https://www.encodeproject.org/files/ENCFF994KPK/@@download/ENCFF994KPK.fastq.gz Illumina HiSeq 2500 /files/ENCFF510UAH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF836CBD fastq reads ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 923321750 Xiang-Dong Fu, UCSD 943f117be3e2b776e6e03e98e0fc7eaa SRA:SRR6213547 https://www.encodeproject.org/files/ENCFF836CBD/@@download/ENCFF836CBD.fastq.gz Illumina HiSeq 2500 /files/ENCFF092DDZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF471TDC bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF836CBD 469746382 ENCODE Processing Pipeline a221a4ee6899ee5a6eb568bc999c5c5e https://www.encodeproject.org/files/ENCFF471TDC/@@download/ENCFF471TDC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF188QXQ bam unfiltered alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF836CBD 1126917716 ENCODE Processing Pipeline 3f1d44f733ae14e3ac1cd66865ac3f6f https://www.encodeproject.org/files/ENCFF188QXQ/@@download/ENCFF188QXQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF502HMU bam unfiltered alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF994KPK 1184733176 ENCODE Processing Pipeline 949b6c515f66cb1fa057465173857fe5 https://www.encodeproject.org/files/ENCFF502HMU/@@download/ENCFF502HMU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF490RQI bam unfiltered alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF994KPK 1180466293 ENCODE Processing Pipeline 67946f16968af9145eb26e6bad9f29d6 https://www.encodeproject.org/files/ENCFF490RQI/@@download/ENCFF490RQI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF648AFL bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF994KPK 539999169 ENCODE Processing Pipeline 9fc2aa84c1cff25d2d47ffd21a223fa3 https://www.encodeproject.org/files/ENCFF648AFL/@@download/ENCFF648AFL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF360QAB bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF994KPK 539301646 ENCODE Processing Pipeline 911e214e9d930a83a0f70ad2086916ec https://www.encodeproject.org/files/ENCFF360QAB/@@download/ENCFF360QAB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF431XVO bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF836CBD 470352558 ENCODE Processing Pipeline dbf52045fe1f074f73d9f1580ee04bae https://www.encodeproject.org/files/ENCFF431XVO/@@download/ENCFF431XVO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF889EEB bam unfiltered alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF836CBD 1122593363 ENCODE Processing Pipeline 8729b269d89c159d37a9e6f4095ca295 https://www.encodeproject.org/files/ENCFF889EEB/@@download/ENCFF889EEB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF775IVB bigWig signal p-value ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431XVO, ENCFF572OMD 413113370 ENCODE Processing Pipeline 97c736ccc50958583ca645dfa57de92a https://www.encodeproject.org/files/ENCFF775IVB/@@download/ENCFF775IVB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF197LLD bigWig signal p-value ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF648AFL 472052246 ENCODE Processing Pipeline 072fe84a7e78b7040cb19b1b373f406a https://www.encodeproject.org/files/ENCFF197LLD/@@download/ENCFF197LLD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF115WOM bigWig signal p-value ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF431XVO, ENCFF508DBG, ENCFF572OMD, ENCFF648AFL 831230770 ENCODE Processing Pipeline 806a1ddd09a186a89c19b062d633c145 https://www.encodeproject.org/files/ENCFF115WOM/@@download/ENCFF115WOM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF195LIB bigWig fold change over control ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF648AFL 362924860 ENCODE Processing Pipeline 70f53f2c50747519fb90b3f143165ab8 https://www.encodeproject.org/files/ENCFF195LIB/@@download/ENCFF195LIB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF739PXE bigWig fold change over control ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431XVO, ENCFF572OMD 297736955 ENCODE Processing Pipeline 70d852c7f6abd981550883f4b28d672e https://www.encodeproject.org/files/ENCFF739PXE/@@download/ENCFF739PXE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF054VBS bigWig fold change over control ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF431XVO, ENCFF508DBG, ENCFF572OMD, ENCFF648AFL 723274368 ENCODE Processing Pipeline f10632f7fd6c251cecd0a9a3779c3755 https://www.encodeproject.org/files/ENCFF054VBS/@@download/ENCFF054VBS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF980ENB bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431XVO, ENCFF572OMD 5998545 ENCODE Processing Pipeline a861b9c84c22d404d0e45ef934e017d2 https://www.encodeproject.org/files/ENCFF980ENB/@@download/ENCFF980ENB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF023SZR bigBed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF191KLS 12958457 ENCODE Processing Pipeline 140a72180847f5d1f68fa25723dbcadc https://www.encodeproject.org/files/ENCFF023SZR/@@download/ENCFF023SZR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF939GVX bigBed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF980ENB 12927732 ENCODE Processing Pipeline f9605f2a4982d07847b1e2c14b8e6ac5 https://www.encodeproject.org/files/ENCFF939GVX/@@download/ENCFF939GVX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF191KLS bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF648AFL 6220137 ENCODE Processing Pipeline 83bc0b2fc5f626e6c45d14ff150c1ac7 https://www.encodeproject.org/files/ENCFF191KLS/@@download/ENCFF191KLS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF790CEE bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF431XVO, ENCFF508DBG, ENCFF572OMD, ENCFF648AFL 7175237 ENCODE Processing Pipeline cabbccd88785f8ad1a8113c22ac7bb49 https://www.encodeproject.org/files/ENCFF790CEE/@@download/ENCFF790CEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF107MPX bigBed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF790CEE 12936979 ENCODE Processing Pipeline 8d31e5d80d20dffc4565644f39acecf9 https://www.encodeproject.org/files/ENCFF107MPX/@@download/ENCFF107MPX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF242XOG bigBed narrowPeak conservative idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF556KWA 528534 ENCODE Processing Pipeline a04c5e9d2a267c949581d4079ecf7319 https://www.encodeproject.org/files/ENCFF242XOG/@@download/ENCFF242XOG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF556KWA bed narrowPeak conservative idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF191KLS, ENCFF790CEE, ENCFF980ENB 199829 ENCODE Processing Pipeline 5943d47018181e2692efa861635e81a1 https://www.encodeproject.org/files/ENCFF556KWA/@@download/ENCFF556KWA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF836VRV bed narrowPeak optimal idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF191KLS, ENCFF790CEE, ENCFF980ENB 213412 ENCODE Processing Pipeline ed6161b402cc3a65c4fcd72b0bcd501a https://www.encodeproject.org/files/ENCFF836VRV/@@download/ENCFF836VRV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF601MYL bigBed narrowPeak optimal idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF836VRV 557929 ENCODE Processing Pipeline 5d3d166c07759ee8b7a2886a33ea3ce4 https://www.encodeproject.org/files/ENCFF601MYL/@@download/ENCFF601MYL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF308CCV bigWig signal p-value ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF360QAB 585571389 ENCODE Processing Pipeline d7fe9d33c2db3391f16895355d911fc7 https://www.encodeproject.org/files/ENCFF308CCV/@@download/ENCFF308CCV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF717NDQ bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF360QAB 6202996 ENCODE Processing Pipeline 752a2a067a1a9191ee98b5ebc49d4b5c https://www.encodeproject.org/files/ENCFF717NDQ/@@download/ENCFF717NDQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF741BCI bigBed narrowPeak optimal idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100VYA 556981 ENCODE Processing Pipeline c8dd07dc23ce93d4725354b8979c1f9b https://www.encodeproject.org/files/ENCFF741BCI/@@download/ENCFF741BCI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF117VZX bigWig signal p-value ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF471TDC 455829234 ENCODE Processing Pipeline 175bcecba1d7f63fc3ac52acbd31195d https://www.encodeproject.org/files/ENCFF117VZX/@@download/ENCFF117VZX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF057BCB bigWig fold change over control ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF471TDC 291116783 ENCODE Processing Pipeline bba539657fa3c9866167f7fe1909eaf2 https://www.encodeproject.org/files/ENCFF057BCB/@@download/ENCFF057BCB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF124PJH bigBed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF577CIY 12917674 ENCODE Processing Pipeline 404f83d9d589c42db0aed01b497b1318 https://www.encodeproject.org/files/ENCFF124PJH/@@download/ENCFF124PJH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF927SOS bed narrowPeak conservative idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF110JOA, ENCFF419RSJ, ENCFF577CIY, ENCFF717NDQ 189895 ENCODE Processing Pipeline 6af1bf0c1cc7cf347f2cfbea481c3f81 https://www.encodeproject.org/files/ENCFF927SOS/@@download/ENCFF927SOS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF893JPR bigBed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF110JOA 12919576 ENCODE Processing Pipeline 72241f0eca34235c32fe3474910e7948 https://www.encodeproject.org/files/ENCFF893JPR/@@download/ENCFF893JPR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF968KYK bigWig signal p-value ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF360QAB, ENCFF471TDC 851439905 ENCODE Processing Pipeline ecf446d629981c4c75cbd903c75a5b97 https://www.encodeproject.org/files/ENCFF968KYK/@@download/ENCFF968KYK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF577CIY bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF471TDC 5974176 ENCODE Processing Pipeline ccad72acf1f51fe8632102542f1352e1 https://www.encodeproject.org/files/ENCFF577CIY/@@download/ENCFF577CIY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF593VAW bigWig fold change over control ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF360QAB 351994527 ENCODE Processing Pipeline efa35b6202a02464618b7ab0a82a1899 https://www.encodeproject.org/files/ENCFF593VAW/@@download/ENCFF593VAW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF849NJM bigWig fold change over control ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF360QAB, ENCFF471TDC 721613312 ENCODE Processing Pipeline be2eaa7781e21d1c369ff0ad8aefe803 https://www.encodeproject.org/files/ENCFF849NJM/@@download/ENCFF849NJM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF110JOA bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF360QAB, ENCFF471TDC 7151450 ENCODE Processing Pipeline 0db23da7a4ed1023a9e624047836efda https://www.encodeproject.org/files/ENCFF110JOA/@@download/ENCFF110JOA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF497HRN bigBed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF717NDQ 12931051 ENCODE Processing Pipeline f6b42f38e75aec98cbe46b863fbdc50d https://www.encodeproject.org/files/ENCFF497HRN/@@download/ENCFF497HRN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF200JEU bigBed narrowPeak conservative idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF927SOS 515262 ENCODE Processing Pipeline 7e44de415f94b59f9ee3a3a618881200 https://www.encodeproject.org/files/ENCFF200JEU/@@download/ENCFF200JEU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF100VYA bed narrowPeak optimal idr thresholded peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF110JOA, ENCFF419RSJ, ENCFF577CIY, ENCFF717NDQ 209513 ENCODE Processing Pipeline 132d647cfe6f35c66853b5033ea05b05 https://www.encodeproject.org/files/ENCFF100VYA/@@download/ENCFF100VYA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF495VRD fastq reads ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2341742411 Richard Myers, HAIB cf251b957f552916dfb33219650f6c42 SRA:SRR5331267 https://www.encodeproject.org/files/ENCFF495VRD/@@download/ENCFF495VRD.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF461VNE fastq reads ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2202635441 Richard Myers, HAIB 1466b3cb19d494a6ba1e27a546f64e10 SRA:SRR5331266 https://www.encodeproject.org/files/ENCFF461VNE/@@download/ENCFF461VNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF381BDQ bam unfiltered alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF461VNE, ENCFF807MUK 2408607560 ENCODE Processing Pipeline 617c5e72695f2650acf4e13213775947 https://www.encodeproject.org/files/ENCFF381BDQ/@@download/ENCFF381BDQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF024FCT bam unfiltered alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF495VRD, ENCFF643CGH 2539029664 ENCODE Processing Pipeline 53dc202fc578babe6e9a54fa78f07544 https://www.encodeproject.org/files/ENCFF024FCT/@@download/ENCFF024FCT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF077ZGC bam unfiltered alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF461VNE, ENCFF643CGH 2413618933 ENCODE Processing Pipeline f6eb76a30df5e0e3c3ff43358fbfb77c https://www.encodeproject.org/files/ENCFF077ZGC/@@download/ENCFF077ZGC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF533AUS bam unfiltered alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF495VRD, ENCFF807MUK 2533346572 ENCODE Processing Pipeline 4eee7c4de7ac7850804e521fad7869bf https://www.encodeproject.org/files/ENCFF533AUS/@@download/ENCFF533AUS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670MUB bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF461VNE, ENCFF807MUK 1770531430 ENCODE Processing Pipeline e597e1e0439f95c72ca235d124f41efb https://www.encodeproject.org/files/ENCFF670MUB/@@download/ENCFF670MUB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF273QQZ bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF495VRD, ENCFF643CGH 1861821574 ENCODE Processing Pipeline bb0d1cdf94958a8c5ba93c84ef71f1ca https://www.encodeproject.org/files/ENCFF273QQZ/@@download/ENCFF273QQZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF603ETF bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF461VNE, ENCFF643CGH 1771557652 ENCODE Processing Pipeline a173fce46d34f265a46328563740879a https://www.encodeproject.org/files/ENCFF603ETF/@@download/ENCFF603ETF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF925MJO bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF495VRD, ENCFF807MUK 1860643328 ENCODE Processing Pipeline 350f4b0b0fe6f1f21c2bcaa7c1144dbf https://www.encodeproject.org/files/ENCFF925MJO/@@download/ENCFF925MJO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF820MLL bigWig signal p-value ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF603ETF 658731133 ENCODE Processing Pipeline 162c014b14254ea69b4781d1b67b0e10 https://www.encodeproject.org/files/ENCFF820MLL/@@download/ENCFF820MLL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF027FLU bigWig signal p-value ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF273QQZ 664561323 ENCODE Processing Pipeline a907df1a14ebcf0bc34584591cfe57cd https://www.encodeproject.org/files/ENCFF027FLU/@@download/ENCFF027FLU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF598EOR bigWig signal p-value ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF273QQZ, ENCFF603ETF 658870860 ENCODE Processing Pipeline 900bcc1a302ef438eabd10cb359750d2 https://www.encodeproject.org/files/ENCFF598EOR/@@download/ENCFF598EOR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF737WWY bigWig fold change over control ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF603ETF 655957613 ENCODE Processing Pipeline e1de135ad1a7800fd68a678271a6e955 https://www.encodeproject.org/files/ENCFF737WWY/@@download/ENCFF737WWY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF686DMW bigWig fold change over control ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF273QQZ 681646017 ENCODE Processing Pipeline c6d8ea1111e5632a03ef1e60e62bdf70 https://www.encodeproject.org/files/ENCFF686DMW/@@download/ENCFF686DMW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308CRA bigWig fold change over control ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF273QQZ, ENCFF603ETF 1082174373 ENCODE Processing Pipeline fdad0eb54279bcb9ceaccb801774f14f https://www.encodeproject.org/files/ENCFF308CRA/@@download/ENCFF308CRA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649RIC bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF603ETF 6329413 ENCODE Processing Pipeline 55d253a417b0979106bac7f0d702390f https://www.encodeproject.org/files/ENCFF649RIC/@@download/ENCFF649RIC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF972DSX bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF273QQZ, ENCFF603ETF 6997147 ENCODE Processing Pipeline 62db2cde6fee0a148cd6d9a67ddfd856 https://www.encodeproject.org/files/ENCFF972DSX/@@download/ENCFF972DSX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF585GIM bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF273QQZ 6471943 ENCODE Processing Pipeline 9ef53c5ba110e263def9f6546365b3b3 https://www.encodeproject.org/files/ENCFF585GIM/@@download/ENCFF585GIM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF397OLK bigBed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF649RIC 13013613 ENCODE Processing Pipeline 53f66ca5899cc00a40c427f25286e510 https://www.encodeproject.org/files/ENCFF397OLK/@@download/ENCFF397OLK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF650FZH bigBed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF972DSX 12942332 ENCODE Processing Pipeline a1f9eb9931ea4a2aa99e516f2e373a85 https://www.encodeproject.org/files/ENCFF650FZH/@@download/ENCFF650FZH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF383SRB bigBed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF585GIM 13031135 ENCODE Processing Pipeline c3af7828f158e7cda634f73ba7be88d3 https://www.encodeproject.org/files/ENCFF383SRB/@@download/ENCFF383SRB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469QQF bed narrowPeak conservative idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF585GIM, ENCFF649RIC, ENCFF972DSX 441527 ENCODE Processing Pipeline e5c24989f2fd4ac47a3a76aff3c60b87 https://www.encodeproject.org/files/ENCFF469QQF/@@download/ENCFF469QQF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887AMF bigBed narrowPeak optimal idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF928HFL 914928 ENCODE Processing Pipeline 7acbe63dee911bfee3e6d20bd8bd5bcd https://www.encodeproject.org/files/ENCFF887AMF/@@download/ENCFF887AMF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425PGW bigBed narrowPeak conservative idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF469QQF 893034 ENCODE Processing Pipeline dd2c924da5c3a21c978eb064be114c8c https://www.encodeproject.org/files/ENCFF425PGW/@@download/ENCFF425PGW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF928HFL bed narrowPeak optimal idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF585GIM, ENCFF649RIC, ENCFF972DSX 456196 ENCODE Processing Pipeline 94c632a986adaf2a46df75539c5ebc74 https://www.encodeproject.org/files/ENCFF928HFL/@@download/ENCFF928HFL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF512XHX bigWig signal p-value ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF670MUB 1403800851 ENCODE Processing Pipeline a3bc4ad598f1030020ee566d4475fb7b https://www.encodeproject.org/files/ENCFF512XHX/@@download/ENCFF512XHX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF626WRM bigWig signal p-value ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF925MJO 1302901717 ENCODE Processing Pipeline c90d6506edc14b442dde4d1f3bd549a8 https://www.encodeproject.org/files/ENCFF626WRM/@@download/ENCFF626WRM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF422OCC bigWig signal p-value ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF670MUB, ENCFF925MJO 1439840001 ENCODE Processing Pipeline 4f2212f8973574bc5702ad3bd090775b https://www.encodeproject.org/files/ENCFF422OCC/@@download/ENCFF422OCC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF104SIU bigWig fold change over control ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF670MUB 1166963836 ENCODE Processing Pipeline a5c952134caef9adbea88d23b1d26b9b https://www.encodeproject.org/files/ENCFF104SIU/@@download/ENCFF104SIU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028RSM bigWig fold change over control ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF925MJO 1232448730 ENCODE Processing Pipeline b8249a6d6b1ab920adf5f9d384ac9a66 https://www.encodeproject.org/files/ENCFF028RSM/@@download/ENCFF028RSM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF941UWE bigWig fold change over control ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF670MUB, ENCFF925MJO 1776285974 ENCODE Processing Pipeline 23c3b8b6cc570bee73e23570c2302a90 https://www.encodeproject.org/files/ENCFF941UWE/@@download/ENCFF941UWE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF663WHF bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF670MUB 6947945 ENCODE Processing Pipeline 1edc9092c9d332f70fbe3123ddfef3f1 https://www.encodeproject.org/files/ENCFF663WHF/@@download/ENCFF663WHF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF243QDS bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF925MJO 6947536 ENCODE Processing Pipeline fdad4a1cea0d49aae152ffd49f80c00b https://www.encodeproject.org/files/ENCFF243QDS/@@download/ENCFF243QDS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF582ZDR bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF670MUB, ENCFF925MJO 7106902 ENCODE Processing Pipeline 03f06c1ea6d2790be4b17ed67c8c0bf6 https://www.encodeproject.org/files/ENCFF582ZDR/@@download/ENCFF582ZDR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531UDW bigBed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF663WHF 12994842 ENCODE Processing Pipeline 92554383b58556bbb745d63475b1faa6 https://www.encodeproject.org/files/ENCFF531UDW/@@download/ENCFF531UDW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF890RCU bigBed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF243QDS 12971543 ENCODE Processing Pipeline 9f83e0fdcc3e6493d6e1993c045d992f https://www.encodeproject.org/files/ENCFF890RCU/@@download/ENCFF890RCU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392VXZ bed narrowPeak conservative idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF243QDS, ENCFF582ZDR, ENCFF663WHF 431086 ENCODE Processing Pipeline c0ea1b79d0137b6d7b60a5557dda6b2b https://www.encodeproject.org/files/ENCFF392VXZ/@@download/ENCFF392VXZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF538XTC bigBed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF582ZDR 12829118 ENCODE Processing Pipeline 5fb197522468d120339218d1a430418a https://www.encodeproject.org/files/ENCFF538XTC/@@download/ENCFF538XTC.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF070GNA bed narrowPeak optimal idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF243QDS, ENCFF582ZDR, ENCFF663WHF 440040 ENCODE Processing Pipeline 2388abbaa0be740ac7c78b9956bb48c9 https://www.encodeproject.org/files/ENCFF070GNA/@@download/ENCFF070GNA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF189RZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF392VXZ 890885 ENCODE Processing Pipeline 45ff1d23aaf73309d4caced0b123ad78 https://www.encodeproject.org/files/ENCFF189RZZ/@@download/ENCFF189RZZ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF292LNS bigBed narrowPeak optimal idr thresholded peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF070GNA 904142 ENCODE Processing Pipeline 71950b1cd3940b8654fa472f02192704 https://www.encodeproject.org/files/ENCFF292LNS/@@download/ENCFF292LNS.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795MVM fastq reads ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1375457120 Richard Myers, HAIB b8a018d14995ed23e5e1d00843c85383 SRA:SRR5339609 https://www.encodeproject.org/files/ENCFF795MVM/@@download/ENCFF795MVM.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF351KCG fastq reads ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1592082329 Richard Myers, HAIB a091215b39d79cb4c90d67f4a6c29cee SRA:SRR5339608 https://www.encodeproject.org/files/ENCFF351KCG/@@download/ENCFF351KCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF642CVG bam unfiltered alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF795MVM, ENCFF807MUK 1491084289 ENCODE Processing Pipeline bc356143423f8837a2115845a953b1ab https://www.encodeproject.org/files/ENCFF642CVG/@@download/ENCFF642CVG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF276KJX bam unfiltered alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF351KCG, ENCFF807MUK 1717496595 ENCODE Processing Pipeline 0934670c25c9e6d667cc89b52a706ce9 https://www.encodeproject.org/files/ENCFF276KJX/@@download/ENCFF276KJX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF688VTW bam unfiltered alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF351KCG, ENCFF643CGH 1721207742 ENCODE Processing Pipeline a98389669bcd169395fff618edd084e9 https://www.encodeproject.org/files/ENCFF688VTW/@@download/ENCFF688VTW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875XUT bam unfiltered alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF795MVM 1494479008 ENCODE Processing Pipeline 854faa98828e45eeb17064d95535f61b https://www.encodeproject.org/files/ENCFF875XUT/@@download/ENCFF875XUT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795LWN bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF795MVM, ENCFF807MUK 1152927843 ENCODE Processing Pipeline b1545d224aca23487d890bce3b771c57 https://www.encodeproject.org/files/ENCFF795LWN/@@download/ENCFF795LWN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028QZW bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF795MVM 1153609262 ENCODE Processing Pipeline 42e7648e0d942386f6444a3ed8cae064 https://www.encodeproject.org/files/ENCFF028QZW/@@download/ENCFF028QZW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF507NBQ bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF351KCG, ENCFF643CGH 1339177226 ENCODE Processing Pipeline 202f917c79bf46c2dccd66c9437f3319 https://www.encodeproject.org/files/ENCFF507NBQ/@@download/ENCFF507NBQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF737RIN bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF351KCG, ENCFF807MUK 1338497346 ENCODE Processing Pipeline f17f6d20abe2ea2d431e965b9bc3fc8c https://www.encodeproject.org/files/ENCFF737RIN/@@download/ENCFF737RIN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935WLX bigWig signal p-value ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF507NBQ 521347138 ENCODE Processing Pipeline a539df498cf1eab8645b11519749eb6e https://www.encodeproject.org/files/ENCFF935WLX/@@download/ENCFF935WLX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF941KJJ bigWig signal p-value ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF028QZW, ENCFF507NBQ 669895515 ENCODE Processing Pipeline cd90824316e4a7569d28ee2565557d51 https://www.encodeproject.org/files/ENCFF941KJJ/@@download/ENCFF941KJJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF936MWL bigWig fold change over control ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF028QZW 430910643 ENCODE Processing Pipeline f9acefefab270e66ea0fbff60c1b5c0f https://www.encodeproject.org/files/ENCFF936MWL/@@download/ENCFF936MWL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF873BAZ bigWig signal p-value ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF028QZW 511922446 ENCODE Processing Pipeline 391d108087e92f282ac2495b50693648 https://www.encodeproject.org/files/ENCFF873BAZ/@@download/ENCFF873BAZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF764MUZ bigWig fold change over control ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF507NBQ 472497338 ENCODE Processing Pipeline 381e45522c3ab5993c74ac8446b26d1f https://www.encodeproject.org/files/ENCFF764MUZ/@@download/ENCFF764MUZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF165CAC bigWig fold change over control ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF028QZW, ENCFF507NBQ 766305075 ENCODE Processing Pipeline 01f0547fb424c0f4348f2f90c85ae260 https://www.encodeproject.org/files/ENCFF165CAC/@@download/ENCFF165CAC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF724SWR bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF507NBQ 6030899 ENCODE Processing Pipeline 02f045fd25aece033c1f0ce97cba74af https://www.encodeproject.org/files/ENCFF724SWR/@@download/ENCFF724SWR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF847KKE bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF028QZW 5545315 ENCODE Processing Pipeline 7c20936a3f7a6de78f9dcb1577d1fb5d https://www.encodeproject.org/files/ENCFF847KKE/@@download/ENCFF847KKE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF417YFV bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF028QZW, ENCFF507NBQ 6598060 ENCODE Processing Pipeline e7ac69a10120f3372d5fff51aab81695 https://www.encodeproject.org/files/ENCFF417YFV/@@download/ENCFF417YFV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF286FHO bigBed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF724SWR 13159094 ENCODE Processing Pipeline 2220b8bb3c4cb8083aa9eae90d7e8c3d https://www.encodeproject.org/files/ENCFF286FHO/@@download/ENCFF286FHO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF701INU bigBed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF417YFV 13155536 ENCODE Processing Pipeline 68083f62a1216f869ed662f5fe4bb1a5 https://www.encodeproject.org/files/ENCFF701INU/@@download/ENCFF701INU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF337GPX bigBed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF847KKE 13176399 ENCODE Processing Pipeline 3b396fd9d9242e9430613926e4188e91 https://www.encodeproject.org/files/ENCFF337GPX/@@download/ENCFF337GPX.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF413WVP bed narrowPeak conservative idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF417YFV, ENCFF419RSJ, ENCFF724SWR, ENCFF847KKE 153133 ENCODE Processing Pipeline 05f6b6ee66d7e636e2c53a9b458f4554 https://www.encodeproject.org/files/ENCFF413WVP/@@download/ENCFF413WVP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF590EST bigBed narrowPeak optimal idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF529UJY 371418 ENCODE Processing Pipeline 4eec15abbf346ae0f8d76c680bbfff1a https://www.encodeproject.org/files/ENCFF590EST/@@download/ENCFF590EST.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF529UJY bed narrowPeak optimal idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF417YFV, ENCFF419RSJ, ENCFF724SWR, ENCFF847KKE 155399 ENCODE Processing Pipeline 2e23639f78aa7ffc989b2a61497a369b https://www.encodeproject.org/files/ENCFF529UJY/@@download/ENCFF529UJY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF739SPU bigBed narrowPeak conservative idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF413WVP 366676 ENCODE Processing Pipeline d66635878603e3b64871efa4fb356138 https://www.encodeproject.org/files/ENCFF739SPU/@@download/ENCFF739SPU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF329LXS bigWig signal p-value ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF737RIN 1215071824 ENCODE Processing Pipeline 4e0ee55539df2c20e51e660fa41689a7 https://www.encodeproject.org/files/ENCFF329LXS/@@download/ENCFF329LXS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF093YTV bigWig signal p-value ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF795LWN 1170574886 ENCODE Processing Pipeline e6576e921794a69c5979d09545d0a4e7 https://www.encodeproject.org/files/ENCFF093YTV/@@download/ENCFF093YTV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF326WAL bigWig signal p-value ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF737RIN, ENCFF795LWN 1358839541 ENCODE Processing Pipeline 632f90e972f924c2dea153b4bf645e17 https://www.encodeproject.org/files/ENCFF326WAL/@@download/ENCFF326WAL.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF629IQG bigWig fold change over control ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF737RIN 879904123 ENCODE Processing Pipeline e5eba9a43b1880a0ec5d1e43cc3f9382 https://www.encodeproject.org/files/ENCFF629IQG/@@download/ENCFF629IQG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF903SRX bigWig fold change over control ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF795LWN 885861127 ENCODE Processing Pipeline 33aaa5a58d981e4a6028b0521094ed3b https://www.encodeproject.org/files/ENCFF903SRX/@@download/ENCFF903SRX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF401LXI bigWig fold change over control ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF737RIN, ENCFF795LWN 1309637904 ENCODE Processing Pipeline 5046cc9e655a290c38b6dc6067f6838f https://www.encodeproject.org/files/ENCFF401LXI/@@download/ENCFF401LXI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003YYP bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF737RIN 6726326 ENCODE Processing Pipeline 73c92a832e55bd708ccb72e4f5557b4e https://www.encodeproject.org/files/ENCFF003YYP/@@download/ENCFF003YYP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405GYP bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF795LWN 6532978 ENCODE Processing Pipeline 7dd538179411c1feafb5683291773164 https://www.encodeproject.org/files/ENCFF405GYP/@@download/ENCFF405GYP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695EWL bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF737RIN, ENCFF795LWN 7092621 ENCODE Processing Pipeline e5f8bb238a0adacfaaf9369566d18257 https://www.encodeproject.org/files/ENCFF695EWL/@@download/ENCFF695EWL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF919JOI bigBed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF405GYP 13280794 ENCODE Processing Pipeline d68a1a8a2a47e4546b4110fe37a82d47 https://www.encodeproject.org/files/ENCFF919JOI/@@download/ENCFF919JOI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935CQL bigBed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF003YYP 13146104 ENCODE Processing Pipeline 10f64556d8ead4351285324dd2b04780 https://www.encodeproject.org/files/ENCFF935CQL/@@download/ENCFF935CQL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF705KOR bigBed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF695EWL 13092668 ENCODE Processing Pipeline bbbbfc7cf9075fe91bcb18eba2295f63 https://www.encodeproject.org/files/ENCFF705KOR/@@download/ENCFF705KOR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF183GLW bigBed narrowPeak conservative idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045ADH 271812 ENCODE Processing Pipeline 61a220965c189b76b74cef7488fac4ba https://www.encodeproject.org/files/ENCFF183GLW/@@download/ENCFF183GLW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935DRA bed narrowPeak optimal idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF003YYP, ENCFF405GYP, ENCFF695EWL 138170 ENCODE Processing Pipeline 940531fe2dfac10cf8a454410b585cc2 https://www.encodeproject.org/files/ENCFF935DRA/@@download/ENCFF935DRA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045ADH bed narrowPeak conservative idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF003YYP, ENCFF405GYP, ENCFF695EWL 126799 ENCODE Processing Pipeline 45138303073d842143634be12c724cae https://www.encodeproject.org/files/ENCFF045ADH/@@download/ENCFF045ADH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF870YUG bigBed narrowPeak optimal idr thresholded peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF935DRA 288057 ENCODE Processing Pipeline 9ba89e685284d01b95fbb5079d51018b https://www.encodeproject.org/files/ENCFF870YUG/@@download/ENCFF870YUG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738EEY fastq reads ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 1224039899 Xiang-Dong Fu, UCSD d9e65d565b0b2bb4aff7cd944774fdd9 SRA:SRR6213048 https://www.encodeproject.org/files/ENCFF738EEY/@@download/ENCFF738EEY.fastq.gz Illumina HiSeq 2500 /files/ENCFF025UQF/ released low read length, low read depth ENCFF235VMD fastq reads ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 1079697852 Xiang-Dong Fu, UCSD a4a08c51fbb65dc721b915c687d8310d SRA:SRR6213047 https://www.encodeproject.org/files/ENCFF235VMD/@@download/ENCFF235VMD.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, low read depth ENCFF173YSU bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF738EEY, ENCFF807MUK 871090391 ENCODE Processing Pipeline 5d35b7f0f65cc290d4de3bb1e6f9d4b0 https://www.encodeproject.org/files/ENCFF173YSU/@@download/ENCFF173YSU.bam hg19 released low read length, low read depth ENCFF544YTS bam unfiltered alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF235VMD, ENCFF807MUK 1425409100 ENCODE Processing Pipeline 27abee42cdaaffa65f260f55c61d16d3 https://www.encodeproject.org/files/ENCFF544YTS/@@download/ENCFF544YTS.bam hg19 released low read length, low read depth ENCFF084EMC bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF235VMD, ENCFF807MUK 784990205 ENCODE Processing Pipeline 5759b2a25d5349236b1ea6eac08cf1f5 https://www.encodeproject.org/files/ENCFF084EMC/@@download/ENCFF084EMC.bam hg19 released low read length, low read depth ENCFF477DLR bam unfiltered alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF738EEY, ENCFF807MUK 1606466362 ENCODE Processing Pipeline 184ddbde954c7a389edab809a605a024 https://www.encodeproject.org/files/ENCFF477DLR/@@download/ENCFF477DLR.bam hg19 released low read length, low read depth ENCFF293IAH bam unfiltered alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF235VMD, ENCFF643CGH 1431027568 ENCODE Processing Pipeline 52bf304edf01659f5b06c12a08f8cd8b https://www.encodeproject.org/files/ENCFF293IAH/@@download/ENCFF293IAH.bam GRCh38 released low read length, low read depth ENCFF733RTM bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF235VMD, ENCFF643CGH 784159636 ENCODE Processing Pipeline ad798f2ef29d13ec5fcee1a649af4a8d https://www.encodeproject.org/files/ENCFF733RTM/@@download/ENCFF733RTM.bam GRCh38 released low read length, low read depth ENCFF429WCK bam unfiltered alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF738EEY 1612606777 ENCODE Processing Pipeline 07c2f4dcca1b458b1849c66f6456baa4 https://www.encodeproject.org/files/ENCFF429WCK/@@download/ENCFF429WCK.bam GRCh38 released low read length, low read depth ENCFF275XJW bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF738EEY 870156852 ENCODE Processing Pipeline 0f64a709f55efc378089d7cf30b052ca https://www.encodeproject.org/files/ENCFF275XJW/@@download/ENCFF275XJW.bam GRCh38 released low read length, low read depth ENCFF823KNI bigWig signal p-value ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF084EMC, ENCFF705ZEH 439359455 ENCODE Processing Pipeline b87e029da225a9bf29759a1d2281f6a3 https://www.encodeproject.org/files/ENCFF823KNI/@@download/ENCFF823KNI.bigWig hg19 released low read length, low read depth ENCFF950KEH bigWig signal p-value ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF173YSU, ENCFF477SGV 585217368 ENCODE Processing Pipeline 2385996fdf0650c4955bb3114990db06 https://www.encodeproject.org/files/ENCFF950KEH/@@download/ENCFF950KEH.bigWig hg19 released low read length, low read depth ENCFF481PYR bigWig signal p-value ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF084EMC, ENCFF173YSU, ENCFF477SGV, ENCFF705ZEH 1013190887 ENCODE Processing Pipeline 9c49e97f4863825f2cc41db3f750b5ac https://www.encodeproject.org/files/ENCFF481PYR/@@download/ENCFF481PYR.bigWig hg19 released low read length, low read depth ENCFF920IAI bigWig fold change over control ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF173YSU, ENCFF477SGV 461993619 ENCODE Processing Pipeline cff0c31be2850b0990e26f00cccd4f23 https://www.encodeproject.org/files/ENCFF920IAI/@@download/ENCFF920IAI.bigWig hg19 released low read length, low read depth ENCFF648RFW bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF084EMC, ENCFF705ZEH 4953053 ENCODE Processing Pipeline 003ea0a0ffa5b64321cb1dd310dd88df https://www.encodeproject.org/files/ENCFF648RFW/@@download/ENCFF648RFW.bed.gz hg19 released low read length, low read depth ENCFF056OUU bed narrowPeak conservative idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF036VGX, ENCFF648RFW, ENCFF788AWO 16014 ENCODE Processing Pipeline 5f42da5b4e79bde9d54891c606a3f7f4 https://www.encodeproject.org/files/ENCFF056OUU/@@download/ENCFF056OUU.bed.gz hg19 released low read length, low read depth ENCFF553KXA bigBed narrowPeak conservative idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF056OUU 109991 ENCODE Processing Pipeline 66ce4963a64933fce3bfc0541918210a https://www.encodeproject.org/files/ENCFF553KXA/@@download/ENCFF553KXA.bigBed hg19 released low read length, low read depth ENCFF102DKZ bigWig fold change over control ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF084EMC, ENCFF705ZEH 427525377 ENCODE Processing Pipeline 2c1faae008525e7abefc56a74c456b22 https://www.encodeproject.org/files/ENCFF102DKZ/@@download/ENCFF102DKZ.bigWig hg19 released low read length, low read depth ENCFF036VGX bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF173YSU, ENCFF477SGV 5188554 ENCODE Processing Pipeline 29ae6be478f6d1e855a650659b303726 https://www.encodeproject.org/files/ENCFF036VGX/@@download/ENCFF036VGX.bed.gz hg19 released low read length, low read depth ENCFF788AWO bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF084EMC, ENCFF173YSU, ENCFF477SGV, ENCFF705ZEH 6582763 ENCODE Processing Pipeline 79cec121b6dc893b0ff6bbbb0ead043c https://www.encodeproject.org/files/ENCFF788AWO/@@download/ENCFF788AWO.bed.gz hg19 released low read length, low read depth ENCFF516SIE bigBed narrowPeak optimal idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF768TJI 125470 ENCODE Processing Pipeline 44d0bba8def55a00abb332e1c0ed6b0d https://www.encodeproject.org/files/ENCFF516SIE/@@download/ENCFF516SIE.bigBed hg19 released low read length, low read depth ENCFF195XFH bigWig fold change over control ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF084EMC, ENCFF173YSU, ENCFF477SGV, ENCFF705ZEH 956440316 ENCODE Processing Pipeline 79190423ab9b53e56755479e9127b521 https://www.encodeproject.org/files/ENCFF195XFH/@@download/ENCFF195XFH.bigWig hg19 released low read length, low read depth ENCFF634JXW bigBed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF036VGX 11023086 ENCODE Processing Pipeline 42a528078853d1eaa474341d0844ec6d https://www.encodeproject.org/files/ENCFF634JXW/@@download/ENCFF634JXW.bigBed hg19 released low read length, low read depth ENCFF662VOP bigBed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF788AWO 13214447 ENCODE Processing Pipeline 4193d675eca939d76fd3750c7eca53da https://www.encodeproject.org/files/ENCFF662VOP/@@download/ENCFF662VOP.bigBed hg19 released low read length, low read depth ENCFF284GPL bigBed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF648RFW 10952191 ENCODE Processing Pipeline 41f752e6302f054eeff9f69369adaca4 https://www.encodeproject.org/files/ENCFF284GPL/@@download/ENCFF284GPL.bigBed hg19 released low read length, low read depth ENCFF768TJI bed narrowPeak optimal idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF036VGX, ENCFF648RFW, ENCFF788AWO 22390 ENCODE Processing Pipeline 00fee95f4f1764d51955ea63e1ac41fe https://www.encodeproject.org/files/ENCFF768TJI/@@download/ENCFF768TJI.bed.gz hg19 released low read length, low read depth ENCFF227KQP bigWig signal p-value ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF198JCQ, ENCFF275XJW, ENCFF308PSW, ENCFF733RTM 888596024 ENCODE Processing Pipeline d54ab432fb73a8775e84c75d8e427262 https://www.encodeproject.org/files/ENCFF227KQP/@@download/ENCFF227KQP.bigWig GRCh38 released low read length, low read depth ENCFF958OKS bigWig signal p-value ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF275XJW, ENCFF308PSW 588107684 ENCODE Processing Pipeline d105c8b3489e0ebcefa5f7e1fc167a3f https://www.encodeproject.org/files/ENCFF958OKS/@@download/ENCFF958OKS.bigWig GRCh38 released low read length, low read depth ENCFF062UJT bigWig fold change over control ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF275XJW, ENCFF308PSW 454200423 ENCODE Processing Pipeline 530f4c295f3d52e9b763d18a79b10707 https://www.encodeproject.org/files/ENCFF062UJT/@@download/ENCFF062UJT.bigWig GRCh38 released low read length, low read depth ENCFF765KAI bigWig signal p-value ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF733RTM 505246184 ENCODE Processing Pipeline db299fcce2a2c802f18a7994ab12ad7b https://www.encodeproject.org/files/ENCFF765KAI/@@download/ENCFF765KAI.bigWig GRCh38 released low read length, low read depth ENCFF776MBR bigWig fold change over control ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF733RTM 436181096 ENCODE Processing Pipeline cd2279bc3c0b92f510f47abb9e8d313f https://www.encodeproject.org/files/ENCFF776MBR/@@download/ENCFF776MBR.bigWig GRCh38 released low read length, low read depth ENCFF234JHW bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF275XJW, ENCFF308PSW 5115499 ENCODE Processing Pipeline 72bbc03ca1eaed42953d9acb947d8167 https://www.encodeproject.org/files/ENCFF234JHW/@@download/ENCFF234JHW.bed.gz GRCh38 released low read length, low read depth ENCFF389SYQ bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF733RTM 4943661 ENCODE Processing Pipeline 97946a4c356f6bfe13b1ab78f05ef026 https://www.encodeproject.org/files/ENCFF389SYQ/@@download/ENCFF389SYQ.bed.gz GRCh38 released low read length, low read depth ENCFF404GRH bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF198JCQ, ENCFF275XJW, ENCFF308PSW, ENCFF733RTM 6541886 ENCODE Processing Pipeline 2d73fb6b3b5609bcec17bce7cc0f5279 https://www.encodeproject.org/files/ENCFF404GRH/@@download/ENCFF404GRH.bed.gz GRCh38 released low read length, low read depth ENCFF461DIC bigWig fold change over control ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF198JCQ, ENCFF275XJW, ENCFF308PSW, ENCFF733RTM 944823877 ENCODE Processing Pipeline 90700abd3462d9b65b52b6f7711c8c30 https://www.encodeproject.org/files/ENCFF461DIC/@@download/ENCFF461DIC.bigWig GRCh38 released low read length, low read depth ENCFF936KAN bigBed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF234JHW 11011660 ENCODE Processing Pipeline d0e45dd9e8ba71c5c0281ccafa4c85c3 https://www.encodeproject.org/files/ENCFF936KAN/@@download/ENCFF936KAN.bigBed GRCh38 released low read length, low read depth ENCFF608OEE bigBed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF404GRH 13230571 ENCODE Processing Pipeline 712f6e7377af59ccfdaf7897e407c159 https://www.encodeproject.org/files/ENCFF608OEE/@@download/ENCFF608OEE.bigBed GRCh38 released low read length, low read depth ENCFF209OKY bed narrowPeak conservative idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF234JHW, ENCFF389SYQ, ENCFF404GRH, ENCFF419RSJ 15844 ENCODE Processing Pipeline 8b25431c86eeac4ca2d5b9d8728c0608 https://www.encodeproject.org/files/ENCFF209OKY/@@download/ENCFF209OKY.bed.gz GRCh38 released low read length, low read depth ENCFF051FLZ bigBed narrowPeak conservative idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF209OKY 111167 ENCODE Processing Pipeline 26560e521aa588cdcd96c099656bf543 https://www.encodeproject.org/files/ENCFF051FLZ/@@download/ENCFF051FLZ.bigBed GRCh38 released low read length, low read depth ENCFF319GZK bigBed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF389SYQ 10952584 ENCODE Processing Pipeline 7f9bca53877a8c7b9acdea351f4de268 https://www.encodeproject.org/files/ENCFF319GZK/@@download/ENCFF319GZK.bigBed GRCh38 released low read length, low read depth ENCFF991ZSC bed narrowPeak optimal idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF234JHW, ENCFF389SYQ, ENCFF404GRH, ENCFF419RSJ 21270 ENCODE Processing Pipeline 8adf2bec91d77edc1bf53b8b6b388a0b https://www.encodeproject.org/files/ENCFF991ZSC/@@download/ENCFF991ZSC.bed.gz GRCh38 released low read length, low read depth ENCFF496LDY bigBed narrowPeak optimal idr thresholded peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF991ZSC 124849 ENCODE Processing Pipeline 15167947cd0aaee05560afa9a121d6fb https://www.encodeproject.org/files/ENCFF496LDY/@@download/ENCFF496LDY.bigBed GRCh38 released low read length, low read depth ENCFF608JCC fastq reads ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2574439298 Richard Myers, HAIB c01ded7786fd8f58369541c0ddc5f64e SRA:SRR5339055 https://www.encodeproject.org/files/ENCFF608JCC/@@download/ENCFF608JCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF430LJV fastq reads ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1854107571 Richard Myers, HAIB 67423778c7decf0ff8147115e2739671 SRA:SRR5339054 https://www.encodeproject.org/files/ENCFF430LJV/@@download/ENCFF430LJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795BPY bam unfiltered alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF430LJV, ENCFF643CGH 1954836696 ENCODE Processing Pipeline 86ab4263b80c25fd5c7f5d99dd237ac2 https://www.encodeproject.org/files/ENCFF795BPY/@@download/ENCFF795BPY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF295DRI bam unfiltered alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF608JCC, ENCFF643CGH 2676202634 ENCODE Processing Pipeline 5c45000691002cb41993103a6300a850 https://www.encodeproject.org/files/ENCFF295DRI/@@download/ENCFF295DRI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF313IDI bam unfiltered alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF430LJV, ENCFF807MUK 1950958992 ENCODE Processing Pipeline eea621272a29285be6751948cc14bac5 https://www.encodeproject.org/files/ENCFF313IDI/@@download/ENCFF313IDI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF491HVO bam unfiltered alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF608JCC, ENCFF807MUK 2670376053 ENCODE Processing Pipeline 59fd727b391a728deb46d6d6d86a8997 https://www.encodeproject.org/files/ENCFF491HVO/@@download/ENCFF491HVO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF751UYZ bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF430LJV, ENCFF643CGH 1480260227 ENCODE Processing Pipeline 1e1fcce0146dd489e8356b39cd985750 https://www.encodeproject.org/files/ENCFF751UYZ/@@download/ENCFF751UYZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF176IME bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF430LJV, ENCFF807MUK 1479485528 ENCODE Processing Pipeline 70a3e7f1beaf310e580ab1a81c20e9ab https://www.encodeproject.org/files/ENCFF176IME/@@download/ENCFF176IME.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF406OSZ bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF608JCC, ENCFF643CGH 2026891576 ENCODE Processing Pipeline ce39f36ef1cb7a588d7440df9cd7557f https://www.encodeproject.org/files/ENCFF406OSZ/@@download/ENCFF406OSZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF944MOK bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF608JCC, ENCFF807MUK 2025574410 ENCODE Processing Pipeline 1e2f3c882ced21b2ccb814454206da7c https://www.encodeproject.org/files/ENCFF944MOK/@@download/ENCFF944MOK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261EAM bigWig signal p-value ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF406OSZ 668556939 ENCODE Processing Pipeline a8541db1b37246f407b41e0fa808a476 https://www.encodeproject.org/files/ENCFF261EAM/@@download/ENCFF261EAM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF042IDR bigWig signal p-value ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF751UYZ 571556267 ENCODE Processing Pipeline b4b0db8c7cb7050149f02822f86885a5 https://www.encodeproject.org/files/ENCFF042IDR/@@download/ENCFF042IDR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF369YPB bigWig signal p-value ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF406OSZ, ENCFF751UYZ 650241256 ENCODE Processing Pipeline d6ad433a203a4b9a0c4b6f93f0d8969b https://www.encodeproject.org/files/ENCFF369YPB/@@download/ENCFF369YPB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF746VCI bigWig fold change over control ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF406OSZ 681972220 ENCODE Processing Pipeline 345ce8e1e100f35c9ee0374d3e1b0710 https://www.encodeproject.org/files/ENCFF746VCI/@@download/ENCFF746VCI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF266FZD bigWig fold change over control ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF751UYZ 537102244 ENCODE Processing Pipeline c5ab0668b6e6b2fb9f8bacdee1f0e303 https://www.encodeproject.org/files/ENCFF266FZD/@@download/ENCFF266FZD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF995KYW bigWig fold change over control ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF406OSZ, ENCFF751UYZ 1007233229 ENCODE Processing Pipeline 54162393ca7465b18ddb8fbe961f0c85 https://www.encodeproject.org/files/ENCFF995KYW/@@download/ENCFF995KYW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF857VWZ bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF406OSZ 5896557 ENCODE Processing Pipeline 1f4615e539d5a46b52e210351bd99c3c https://www.encodeproject.org/files/ENCFF857VWZ/@@download/ENCFF857VWZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF021MGO bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF751UYZ 5528172 ENCODE Processing Pipeline 4ed0dd6931b9771703b3258e8e4a6ff5 https://www.encodeproject.org/files/ENCFF021MGO/@@download/ENCFF021MGO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF630HDH bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF406OSZ, ENCFF751UYZ 6601419 ENCODE Processing Pipeline aa86c667d58fc6e5adaaca57ceaf71f3 https://www.encodeproject.org/files/ENCFF630HDH/@@download/ENCFF630HDH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF692ANO bigBed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF857VWZ 13318507 ENCODE Processing Pipeline 34dfdfffdddedc7d63457d9ce2bdfb90 https://www.encodeproject.org/files/ENCFF692ANO/@@download/ENCFF692ANO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF731AHW bigBed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF021MGO 13191904 ENCODE Processing Pipeline 7be99453883c96e822dd5b5d4164721a https://www.encodeproject.org/files/ENCFF731AHW/@@download/ENCFF731AHW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF354ZIK bigBed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF630HDH 13348398 ENCODE Processing Pipeline 7b5b2e793d34758ff9b32277ad4046c8 https://www.encodeproject.org/files/ENCFF354ZIK/@@download/ENCFF354ZIK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF957NPF bed narrowPeak conservative idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF021MGO, ENCFF419RSJ, ENCFF630HDH, ENCFF857VWZ 686757 ENCODE Processing Pipeline 215e440a744d25f93ecb4bd6c2990e2b https://www.encodeproject.org/files/ENCFF957NPF/@@download/ENCFF957NPF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF094SJQ bed narrowPeak optimal idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF021MGO, ENCFF419RSJ, ENCFF630HDH, ENCFF857VWZ 700345 ENCODE Processing Pipeline c7a1c6737876f8f4da403e41b7f6cbb1 https://www.encodeproject.org/files/ENCFF094SJQ/@@download/ENCFF094SJQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF128HNJ bigBed narrowPeak conservative idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF957NPF 1377022 ENCODE Processing Pipeline 4e82ab3804644d3671d192e6ad7c93ee https://www.encodeproject.org/files/ENCFF128HNJ/@@download/ENCFF128HNJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF014YFS bigBed narrowPeak optimal idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF094SJQ 1396974 ENCODE Processing Pipeline 8fc56d07f4e80804cee7d1db5e4468c1 https://www.encodeproject.org/files/ENCFF014YFS/@@download/ENCFF014YFS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF536KBE bigWig signal p-value ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF944MOK 1282366578 ENCODE Processing Pipeline c42ed666d91d0c1f20f37b148f0b94f6 https://www.encodeproject.org/files/ENCFF536KBE/@@download/ENCFF536KBE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF112WLB bigWig signal p-value ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF176IME, ENCFF203ABR 1326658548 ENCODE Processing Pipeline 39926faa5ff2579850eae655525504b6 https://www.encodeproject.org/files/ENCFF112WLB/@@download/ENCFF112WLB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF627TBQ bigWig signal p-value ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF176IME, ENCFF203ABR, ENCFF944MOK 1596381826 ENCODE Processing Pipeline 0dc9f8d4194d665befd8df6c068eb108 https://www.encodeproject.org/files/ENCFF627TBQ/@@download/ENCFF627TBQ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF131OTG bigWig fold change over control ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF944MOK 1223065758 ENCODE Processing Pipeline bc23c3fd4161de41d6f74d49f4365db9 https://www.encodeproject.org/files/ENCFF131OTG/@@download/ENCFF131OTG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF556LWP bigWig fold change over control ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF176IME, ENCFF203ABR 984525800 ENCODE Processing Pipeline 4e135add2dd65c82be15140f3902574a https://www.encodeproject.org/files/ENCFF556LWP/@@download/ENCFF556LWP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF668EYP bigWig fold change over control ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF176IME, ENCFF203ABR, ENCFF944MOK 1637234252 ENCODE Processing Pipeline a90e12fcddef4f01722a26f3921ed422 https://www.encodeproject.org/files/ENCFF668EYP/@@download/ENCFF668EYP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF699AFQ bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF944MOK 6476005 ENCODE Processing Pipeline 671fdbb6a8889905076c9c1040357172 https://www.encodeproject.org/files/ENCFF699AFQ/@@download/ENCFF699AFQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF880JAA bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF176IME, ENCFF203ABR 6026446 ENCODE Processing Pipeline 20222ccfe560daa508009531a5a9f799 https://www.encodeproject.org/files/ENCFF880JAA/@@download/ENCFF880JAA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF455SWX bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF176IME, ENCFF203ABR, ENCFF944MOK 6903447 ENCODE Processing Pipeline 2a20ddb3b47299ea6a9aaa053bab6cb5 https://www.encodeproject.org/files/ENCFF455SWX/@@download/ENCFF455SWX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF351ZFA bigBed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF455SWX 13397779 ENCODE Processing Pipeline 02f87cdf161bb51f114d610b09eba67e https://www.encodeproject.org/files/ENCFF351ZFA/@@download/ENCFF351ZFA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF395KFU bigBed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF699AFQ 13313141 ENCODE Processing Pipeline 4368add71aac8924f7547676e5d54548 https://www.encodeproject.org/files/ENCFF395KFU/@@download/ENCFF395KFU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF418KXG bigBed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF880JAA 11014879 ENCODE Processing Pipeline 4b415fd3a41a954be211c891daac2572 https://www.encodeproject.org/files/ENCFF418KXG/@@download/ENCFF418KXG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF071CAN bigBed narrowPeak conservative idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF841SYA 1105708 ENCODE Processing Pipeline 981c0a7f373899ef22f495f44a335d09 https://www.encodeproject.org/files/ENCFF071CAN/@@download/ENCFF071CAN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF841SYA bed narrowPeak conservative idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF455SWX, ENCFF699AFQ, ENCFF880JAA 665195 ENCODE Processing Pipeline 0d3434528ca0ac4b555f45cdeaab33e7 https://www.encodeproject.org/files/ENCFF841SYA/@@download/ENCFF841SYA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF292KYR bed narrowPeak optimal idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF455SWX, ENCFF699AFQ, ENCFF880JAA 676701 ENCODE Processing Pipeline 819fa3d0d5f6d46911a4a26829c03166 https://www.encodeproject.org/files/ENCFF292KYR/@@download/ENCFF292KYR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF765UXO bigBed narrowPeak optimal idr thresholded peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF292KYR 1120453 ENCODE Processing Pipeline 2a97382d510b3a46261a4748053d3303 https://www.encodeproject.org/files/ENCFF765UXO/@@download/ENCFF765UXO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF001RUL fastq reads ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1642869457 Richard Myers, HAIB 834b82fbdae742cd8680e7be69c41165 SRA:SRR5331594 https://www.encodeproject.org/files/ENCFF001RUL/@@download/ENCFF001RUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVQ/ released antibody characterized with exemption ENCFF001RUM fastq reads ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1959742577 Richard Myers, HAIB 4e63d60d143676d771333502004d6de9 SRA:SRR5331595 https://www.encodeproject.org/files/ENCFF001RUM/@@download/ENCFF001RUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released antibody characterized with exemption ENCFF820SNZ bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF001RUL, ENCFF807MUK 1313528763 ENCODE Processing Pipeline 2366d44c8ad24b78b9a850b4428fd12a https://www.encodeproject.org/files/ENCFF820SNZ/@@download/ENCFF820SNZ.bam hg19 released antibody characterized with exemption ENCFF641CKM bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF001RUM, ENCFF807MUK 1401989953 ENCODE Processing Pipeline c943b52a7295a776d066dda48a57effc https://www.encodeproject.org/files/ENCFF641CKM/@@download/ENCFF641CKM.bam hg19 released antibody characterized with exemption ENCFF674QBG bigWig signal p-value ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF701AOA 787268136 ENCODE Processing Pipeline 2cc1ea74fbe8f1d2f0885d8d273054e8 https://www.encodeproject.org/files/ENCFF674QBG/@@download/ENCFF674QBG.bigWig hg19 released antibody characterized with exemption ENCFF382IWI bigWig fold change over control ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF701AOA 622083962 ENCODE Processing Pipeline e0b3ddbf45d6d9f8fc73255e51db224b https://www.encodeproject.org/files/ENCFF382IWI/@@download/ENCFF382IWI.bigWig hg19 released antibody characterized with exemption ENCFF895SOZ bam unfiltered alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUM, ENCFF643CGH 1997203362 ENCODE Processing Pipeline 426064d8689e2740dbec39db15da86a9 https://www.encodeproject.org/files/ENCFF895SOZ/@@download/ENCFF895SOZ.bam GRCh38 released antibody characterized with exemption ENCFF889IJX bam unfiltered alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUL, ENCFF643CGH 1752393099 ENCODE Processing Pipeline 02fe68de6f6641af1a1d54ab4d43a087 https://www.encodeproject.org/files/ENCFF889IJX/@@download/ENCFF889IJX.bam GRCh38 released antibody characterized with exemption ENCFF412DRO bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUM, ENCFF643CGH 1401333874 ENCODE Processing Pipeline ef9ef6bc208e78dd1e72f74101d4e9ca https://www.encodeproject.org/files/ENCFF412DRO/@@download/ENCFF412DRO.bam GRCh38 released antibody characterized with exemption ENCFF033UID bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUL, ENCFF643CGH 1313034347 ENCODE Processing Pipeline bd34b869ee9a1699ed68552245fe3a0b https://www.encodeproject.org/files/ENCFF033UID/@@download/ENCFF033UID.bam GRCh38 released antibody characterized with exemption ENCFF016LUR bigWig signal p-value ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF033UID, ENCFF505ZUJ 625666621 ENCODE Processing Pipeline 2d2898074280aa5f4550e852d7780e6c https://www.encodeproject.org/files/ENCFF016LUR/@@download/ENCFF016LUR.bigWig GRCh38 released antibody characterized with exemption ENCFF977VWN bigWig signal p-value ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF033UID, ENCFF332SVJ, ENCFF412DRO, ENCFF505ZUJ 1356362507 ENCODE Processing Pipeline 1b65bea3c1628e96003a28e5bc2ea70f https://www.encodeproject.org/files/ENCFF977VWN/@@download/ENCFF977VWN.bigWig GRCh38 released antibody characterized with exemption ENCFF392MIK bigWig signal p-value ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF412DRO 752535303 ENCODE Processing Pipeline 931979369c264eb21a5ddb5b0b2cc4fd https://www.encodeproject.org/files/ENCFF392MIK/@@download/ENCFF392MIK.bigWig GRCh38 released antibody characterized with exemption ENCFF935NYZ bigWig fold change over control ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF033UID, ENCFF505ZUJ 558508108 ENCODE Processing Pipeline 87de8698419566a32949ba2eefa428e4 https://www.encodeproject.org/files/ENCFF935NYZ/@@download/ENCFF935NYZ.bigWig GRCh38 released antibody characterized with exemption ENCFF707MLG bigWig fold change over control ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF412DRO 618791382 ENCODE Processing Pipeline 047c9e3212a8dd2527cab1da4fb5ce4d https://www.encodeproject.org/files/ENCFF707MLG/@@download/ENCFF707MLG.bigWig GRCh38 released antibody characterized with exemption ENCFF059XSX bigWig fold change over control ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF033UID, ENCFF332SVJ, ENCFF412DRO, ENCFF505ZUJ 1270257100 ENCODE Processing Pipeline 925b8e57ca2499b9299228b3392df726 https://www.encodeproject.org/files/ENCFF059XSX/@@download/ENCFF059XSX.bigWig GRCh38 released antibody characterized with exemption ENCFF387MDX bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF033UID, ENCFF332SVJ, ENCFF412DRO, ENCFF505ZUJ 7184179 ENCODE Processing Pipeline 3fd2a3ed842a80455970f014fbf56c10 https://www.encodeproject.org/files/ENCFF387MDX/@@download/ENCFF387MDX.bed.gz GRCh38 released antibody characterized with exemption ENCFF719NDZ bigBed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF904ELN 12819286 ENCODE Processing Pipeline f99113c4ebb463232d40e66d730bd7c7 https://www.encodeproject.org/files/ENCFF719NDZ/@@download/ENCFF719NDZ.bigBed GRCh38 released antibody characterized with exemption ENCFF284GKR bigBed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF387MDX 12863754 ENCODE Processing Pipeline 1bc407f34e41b218a66903aee311c329 https://www.encodeproject.org/files/ENCFF284GKR/@@download/ENCFF284GKR.bigBed GRCh38 released antibody characterized with exemption ENCFF610YNO bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF033UID, ENCFF505ZUJ 6394031 ENCODE Processing Pipeline bcf49f2753707148c025f7cd24f8f2a2 https://www.encodeproject.org/files/ENCFF610YNO/@@download/ENCFF610YNO.bed.gz GRCh38 released antibody characterized with exemption ENCFF904ELN bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF412DRO 6800130 ENCODE Processing Pipeline 390ee1ca8c1ea1096b445e6e99f9980b https://www.encodeproject.org/files/ENCFF904ELN/@@download/ENCFF904ELN.bed.gz GRCh38 released antibody characterized with exemption ENCFF201YMA bigBed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF610YNO 13057783 ENCODE Processing Pipeline 7bf9bef4b622cce389580a33cfc7cf4c https://www.encodeproject.org/files/ENCFF201YMA/@@download/ENCFF201YMA.bigBed GRCh38 released antibody characterized with exemption ENCFF782OUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF548ITQ 786201 ENCODE Processing Pipeline 24661e5f422f2a4a931b5eadf660d7e6 https://www.encodeproject.org/files/ENCFF782OUZ/@@download/ENCFF782OUZ.bigBed GRCh38 released antibody characterized with exemption ENCFF548ITQ bed narrowPeak conservative idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF387MDX, ENCFF419RSJ, ENCFF610YNO, ENCFF904ELN 300978 ENCODE Processing Pipeline b9119c3ba9d91361e3b906e073ad32e3 https://www.encodeproject.org/files/ENCFF548ITQ/@@download/ENCFF548ITQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF573ZWL bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF069AAY 966144 ENCODE Processing Pipeline 05012f3d4f0ebbe24af189f307871a2c https://www.encodeproject.org/files/ENCFF573ZWL/@@download/ENCFF573ZWL.bigBed GRCh38 released antibody characterized with exemption ENCFF069AAY bed narrowPeak optimal idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF387MDX, ENCFF419RSJ, ENCFF610YNO, ENCFF904ELN 400019 ENCODE Processing Pipeline 4fae0f8dac0d78ddbd10368544c7f6a5 https://www.encodeproject.org/files/ENCFF069AAY/@@download/ENCFF069AAY.bed.gz GRCh38 released antibody characterized with exemption ENCFF701AOA bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUM, ENCFF807MUK 1401989981 ENCODE Processing Pipeline 886396e42d2767db9bd6c9e97183179e https://www.encodeproject.org/files/ENCFF701AOA/@@download/ENCFF701AOA.bam hg19 released antibody characterized with exemption ENCFF892AIU bam unfiltered alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUM, ENCFF807MUK 1996110281 ENCODE Processing Pipeline 1878afb148745ccb48dfd8d3658090af https://www.encodeproject.org/files/ENCFF892AIU/@@download/ENCFF892AIU.bam hg19 released antibody characterized with exemption ENCFF877BNT bam unfiltered alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUL, ENCFF807MUK 1750014544 ENCODE Processing Pipeline fd2ad31c91540d62f0fd19fe8a463849 https://www.encodeproject.org/files/ENCFF877BNT/@@download/ENCFF877BNT.bam hg19 released antibody characterized with exemption ENCFF310TZE bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUL, ENCFF807MUK 1313528791 ENCODE Processing Pipeline 0a2369d3a599e39d68ebd1a687712382 https://www.encodeproject.org/files/ENCFF310TZE/@@download/ENCFF310TZE.bam hg19 released antibody characterized with exemption ENCFF254EUL bigWig signal p-value ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF310TZE, ENCFF747SPK 685692749 ENCODE Processing Pipeline 0b2cd8dbec0761a2db79379beea16209 https://www.encodeproject.org/files/ENCFF254EUL/@@download/ENCFF254EUL.bigWig hg19 released antibody characterized with exemption ENCFF177KXS bigWig fold change over control ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF310TZE, ENCFF747SPK 554899467 ENCODE Processing Pipeline 58b29c363adced03e69daca59be92e85 https://www.encodeproject.org/files/ENCFF177KXS/@@download/ENCFF177KXS.bigWig hg19 released antibody characterized with exemption ENCFF235RTU bigWig fold change over control ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF310TZE, ENCFF701AOA, ENCFF747SPK 1272334142 ENCODE Processing Pipeline d77fa00a35e579565dcb218da6c8a719 https://www.encodeproject.org/files/ENCFF235RTU/@@download/ENCFF235RTU.bigWig hg19 released antibody characterized with exemption ENCFF965ONO bigBed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF131YKB 13039717 ENCODE Processing Pipeline b20f967a96986846abdcde29135bdba9 https://www.encodeproject.org/files/ENCFF965ONO/@@download/ENCFF965ONO.bigBed hg19 released antibody characterized with exemption ENCFF842BNK bigBed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF875TQG 12811998 ENCODE Processing Pipeline 6705b73e7ba39165a3eccbf3d0a3f892 https://www.encodeproject.org/files/ENCFF842BNK/@@download/ENCFF842BNK.bigBed hg19 released antibody characterized with exemption ENCFF410JJC bed narrowPeak conservative idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF131YKB, ENCFF235FTG, ENCFF875TQG 299981 ENCODE Processing Pipeline 994f8104a748fbc318af07ff06bd751c https://www.encodeproject.org/files/ENCFF410JJC/@@download/ENCFF410JJC.bed.gz hg19 released antibody characterized with exemption ENCFF131YKB bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF310TZE, ENCFF747SPK 6404445 ENCODE Processing Pipeline ce527a6d51afbb56bee2e1ff7aa357bf https://www.encodeproject.org/files/ENCFF131YKB/@@download/ENCFF131YKB.bed.gz hg19 released antibody characterized with exemption ENCFF875TQG bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF701AOA 6802573 ENCODE Processing Pipeline 51bb4cfa7573995a9a30f2d4d51524c1 https://www.encodeproject.org/files/ENCFF875TQG/@@download/ENCFF875TQG.bed.gz hg19 released antibody characterized with exemption ENCFF079EFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF178MOP 963963 ENCODE Processing Pipeline d62a0aaef6139d4594c8b1fbb30f8907 https://www.encodeproject.org/files/ENCFF079EFI/@@download/ENCFF079EFI.bigBed hg19 released antibody characterized with exemption ENCFF166SEG bigWig signal p-value ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF310TZE, ENCFF701AOA, ENCFF747SPK 1225888351 ENCODE Processing Pipeline 4d14bf7e2aa45fedb63d9a8775861172 https://www.encodeproject.org/files/ENCFF166SEG/@@download/ENCFF166SEG.bigWig hg19 released antibody characterized with exemption ENCFF751OGO bigBed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF235FTG 12855971 ENCODE Processing Pipeline 29a24805491c7190438e891408717912 https://www.encodeproject.org/files/ENCFF751OGO/@@download/ENCFF751OGO.bigBed hg19 released antibody characterized with exemption ENCFF235FTG bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF310TZE, ENCFF701AOA, ENCFF747SPK 7184972 ENCODE Processing Pipeline ebea0ab3ee602810ee67f0f4c8e5709b https://www.encodeproject.org/files/ENCFF235FTG/@@download/ENCFF235FTG.bed.gz hg19 released antibody characterized with exemption ENCFF163TFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF410JJC 782926 ENCODE Processing Pipeline b2a3e3af765ee5ee6a5a99192c2d9ba4 https://www.encodeproject.org/files/ENCFF163TFW/@@download/ENCFF163TFW.bigBed hg19 released antibody characterized with exemption ENCFF178MOP bed narrowPeak optimal idr thresholded peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF131YKB, ENCFF235FTG, ENCFF875TQG 398842 ENCODE Processing Pipeline 8793c337b4cbb250f1ea3226f4282427 https://www.encodeproject.org/files/ENCFF178MOP/@@download/ENCFF178MOP.bed.gz hg19 released antibody characterized with exemption ENCFF385GBU bam unfiltered alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 50 ENCFF807MUK, ENCFF937RXL 1130662657 ENCODE Processing Pipeline 21b2c8caa37f7ee22ce9f2fa9667c644 https://www.encodeproject.org/files/ENCFF385GBU/@@download/ENCFF385GBU.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF512GBU bam unfiltered alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 50 ENCFF604LVZ, ENCFF807MUK 1573153783 ENCODE Processing Pipeline fb65493d25be1144f877f47f8bb9d564 https://www.encodeproject.org/files/ENCFF512GBU/@@download/ENCFF512GBU.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF604LVZ fastq reads ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 1 50 single-ended 1459607357 Richard Myers, HAIB 70ddc60eb1069da8eeebbc689e3f6bcd SRA:SRR5339491 https://www.encodeproject.org/files/ENCFF604LVZ/@@download/ENCFF604LVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF381LXJ/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF937RXL fastq reads ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 1 50 single-ended 1014342596 Richard Myers, HAIB 9e4b1210bfdff374db36c342691a91f7 SRA:SRR5339492 https://www.encodeproject.org/files/ENCFF937RXL/@@download/ENCFF937RXL.fastq.gz Illumina HiSeq 2000 /files/ENCFF210JBU/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF287QCE bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 50 ENCFF807MUK, ENCFF937RXL 836630533 ENCODE Processing Pipeline f71fb6fdf0281b90bb0f580a487096e8 https://www.encodeproject.org/files/ENCFF287QCE/@@download/ENCFF287QCE.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF040OBI bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 50 ENCFF604LVZ, ENCFF807MUK 1167525971 ENCODE Processing Pipeline f1b7fa566414a134cc9bac1960815977 https://www.encodeproject.org/files/ENCFF040OBI/@@download/ENCFF040OBI.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF954DBW bigWig signal p-value ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 883890847 ENCODE Processing Pipeline e750470b676ace92bc3c16d12357c206 https://www.encodeproject.org/files/ENCFF954DBW/@@download/ENCFF954DBW.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF611NLX bigWig signal p-value ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF040OBI, ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 1006957631 ENCODE Processing Pipeline df5d814c49f7d07fa6aeb67de17ec141 https://www.encodeproject.org/files/ENCFF611NLX/@@download/ENCFF611NLX.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF386GSB bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 6557928 ENCODE Processing Pipeline 0944330696de858e261473889af491e0 https://www.encodeproject.org/files/ENCFF386GSB/@@download/ENCFF386GSB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF825OOM bigWig signal p-value ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF040OBI, ENCFF455SPG, ENCFF853BBD 922712482 ENCODE Processing Pipeline 6ccbe0728f770f9f7e25c50de998b747 https://www.encodeproject.org/files/ENCFF825OOM/@@download/ENCFF825OOM.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF115BED bigWig fold change over control ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 675159772 ENCODE Processing Pipeline d80d0cb0bb2c37bb412b9ddce5b253ba https://www.encodeproject.org/files/ENCFF115BED/@@download/ENCFF115BED.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF563BHV bigWig fold change over control ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF040OBI, ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 1082529694 ENCODE Processing Pipeline 5e838f6495a5607ed3c40a5d8e586e12 https://www.encodeproject.org/files/ENCFF563BHV/@@download/ENCFF563BHV.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF850YLB bigWig fold change over control ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF040OBI, ENCFF455SPG, ENCFF853BBD 611220430 ENCODE Processing Pipeline e3b1c3541d3ee3ca227ca135dae90b6a https://www.encodeproject.org/files/ENCFF850YLB/@@download/ENCFF850YLB.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF128RLF bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF040OBI, ENCFF455SPG, ENCFF853BBD 6248897 ENCODE Processing Pipeline b7ffc0466ab1748fee9b6cf80271432e https://www.encodeproject.org/files/ENCFF128RLF/@@download/ENCFF128RLF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF615QCS bigBed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF128RLF 13387692 ENCODE Processing Pipeline 1285428b4777ac4d2718c553dbd35955 https://www.encodeproject.org/files/ENCFF615QCS/@@download/ENCFF615QCS.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF652TKC bigBed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF386GSB 13354369 ENCODE Processing Pipeline b1ad9af36aa9b2bf08675881ffcb97a7 https://www.encodeproject.org/files/ENCFF652TKC/@@download/ENCFF652TKC.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF487NKY bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF040OBI, ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 6995116 ENCODE Processing Pipeline 7cd06f9b09df4086b96dca7dcfb7e69e https://www.encodeproject.org/files/ENCFF487NKY/@@download/ENCFF487NKY.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF014QTE bigBed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF487NKY 13335222 ENCODE Processing Pipeline efecd484da8d1b6b853bd6243c2c142a https://www.encodeproject.org/files/ENCFF014QTE/@@download/ENCFF014QTE.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF147AFG bam unfiltered alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 50 ENCFF643CGH, ENCFF937RXL 1134920789 ENCODE Processing Pipeline ae9b424a32bb26905591544782637d04 https://www.encodeproject.org/files/ENCFF147AFG/@@download/ENCFF147AFG.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF445MBN bam unfiltered alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 50 ENCFF604LVZ, ENCFF643CGH 1578783842 ENCODE Processing Pipeline 0d318b18fa47eb80ed8b4e553607acb6 https://www.encodeproject.org/files/ENCFF445MBN/@@download/ENCFF445MBN.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF421SOC bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 50 ENCFF643CGH, ENCFF937RXL 836210688 ENCODE Processing Pipeline 0a4eb1a3435903903bbf7a10968cadc6 https://www.encodeproject.org/files/ENCFF421SOC/@@download/ENCFF421SOC.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF527PGM bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 50 ENCFF604LVZ, ENCFF643CGH 1167154433 ENCODE Processing Pipeline 4e3156af92a1265ebedd4353945b5268 https://www.encodeproject.org/files/ENCFF527PGM/@@download/ENCFF527PGM.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF345TXC bigWig signal p-value ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF183XMB, ENCFF527PGM, ENCFF667XXT 906857553 ENCODE Processing Pipeline 8a83c60edb7906de68880e7784f0efdc https://www.encodeproject.org/files/ENCFF345TXC/@@download/ENCFF345TXC.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF738VGX bigWig signal p-value ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF183XMB, ENCFF421SOC, ENCFF667XXT 883822483 ENCODE Processing Pipeline 768aa6d5d1248abba4ae35e98f4afd30 https://www.encodeproject.org/files/ENCFF738VGX/@@download/ENCFF738VGX.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF926OZD bigWig fold change over control ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF183XMB, ENCFF527PGM, ENCFF667XXT 604072768 ENCODE Processing Pipeline 00933c08736ef513c33205d4944a7218 https://www.encodeproject.org/files/ENCFF926OZD/@@download/ENCFF926OZD.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF645AER bigWig signal p-value ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF183XMB, ENCFF421SOC, ENCFF527PGM, ENCFF667XXT 982095904 ENCODE Processing Pipeline d13cbc3013c5151e8d8e99977f996a7d https://www.encodeproject.org/files/ENCFF645AER/@@download/ENCFF645AER.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF881BDO bigWig fold change over control ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF183XMB, ENCFF421SOC, ENCFF667XXT 674340824 ENCODE Processing Pipeline a3270dca6f442b729c8076218a852b83 https://www.encodeproject.org/files/ENCFF881BDO/@@download/ENCFF881BDO.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF474YTK bigWig fold change over control ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF183XMB, ENCFF421SOC, ENCFF527PGM, ENCFF667XXT 1042820758 ENCODE Processing Pipeline 1959e1532e3245457976f3a444d4975e https://www.encodeproject.org/files/ENCFF474YTK/@@download/ENCFF474YTK.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF984UQI bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF183XMB, ENCFF527PGM, ENCFF667XXT 5736412 ENCODE Processing Pipeline 88408eec4c90d051552b322d0ed30379 https://www.encodeproject.org/files/ENCFF984UQI/@@download/ENCFF984UQI.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF801GNR bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF183XMB, ENCFF421SOC, ENCFF667XXT 6307356 ENCODE Processing Pipeline fc2dfc0ca18ead8d5f9d6e78bf4d2e10 https://www.encodeproject.org/files/ENCFF801GNR/@@download/ENCFF801GNR.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF369HKV bigBed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF703AOH 13347143 ENCODE Processing Pipeline 9d5dc725599a2c0cd3f9fd8781c786c0 https://www.encodeproject.org/files/ENCFF369HKV/@@download/ENCFF369HKV.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF703AOH bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF183XMB, ENCFF421SOC, ENCFF527PGM, ENCFF667XXT 6886821 ENCODE Processing Pipeline 26ceb5e8e9357e07a806664c35130e22 https://www.encodeproject.org/files/ENCFF703AOH/@@download/ENCFF703AOH.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF423ZPQ bigBed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF984UQI 13352578 ENCODE Processing Pipeline c0b5d16d7a499c987a86c34bb546da8b https://www.encodeproject.org/files/ENCFF423ZPQ/@@download/ENCFF423ZPQ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF124UQX bigBed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF801GNR 13349335 ENCODE Processing Pipeline d36dd865c1c558e5bfd01f114c3fe9a7 https://www.encodeproject.org/files/ENCFF124UQX/@@download/ENCFF124UQX.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF577XYS bed narrowPeak conservative idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF703AOH, ENCFF801GNR, ENCFF984UQI 99225 ENCODE Processing Pipeline 441468ce614d5f08038ccd8ccd55c145 https://www.encodeproject.org/files/ENCFF577XYS/@@download/ENCFF577XYS.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF888FLY bigBed narrowPeak conservative idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF577XYS 237580 ENCODE Processing Pipeline 3cb0ee84df8e54d7142e19b23fa05dd3 https://www.encodeproject.org/files/ENCFF888FLY/@@download/ENCFF888FLY.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF694ZRC bed narrowPeak optimal idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF703AOH, ENCFF801GNR, ENCFF984UQI 176882 ENCODE Processing Pipeline b56f571499e2ddd1cbe25722af7d9547 https://www.encodeproject.org/files/ENCFF694ZRC/@@download/ENCFF694ZRC.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF176BSF bigBed narrowPeak optimal idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF694ZRC 419764 ENCODE Processing Pipeline 73cffa807fa859294ae53795297f2178 https://www.encodeproject.org/files/ENCFF176BSF/@@download/ENCFF176BSF.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF266WAO bigBed narrowPeak conservative idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF807MUP 173813 ENCODE Processing Pipeline 72f70defc913517417e50c6b43b16855 https://www.encodeproject.org/files/ENCFF266WAO/@@download/ENCFF266WAO.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF807MUP bed narrowPeak conservative idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF128RLF, ENCFF386GSB, ENCFF487NKY 80806 ENCODE Processing Pipeline 76407ea6d1270c61fe005ac79b5f1ea2 https://www.encodeproject.org/files/ENCFF807MUP/@@download/ENCFF807MUP.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF995BLG bigBed narrowPeak optimal idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF235RIU 301054 ENCODE Processing Pipeline a662160ea687e8f4c08551f007890da8 https://www.encodeproject.org/files/ENCFF995BLG/@@download/ENCFF995BLG.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF235RIU bed narrowPeak optimal idr thresholded peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF128RLF, ENCFF386GSB, ENCFF487NKY 141623 ENCODE Processing Pipeline dc7415cabbd37772afab2cd1348c825c https://www.encodeproject.org/files/ENCFF235RIU/@@download/ENCFF235RIU.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF000YYX bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YZH 1430325055 Peggy Farnham, USC 68ce8200ab5d57def7fbe800648d5970 https://www.encodeproject.org/files/ENCFF000YYX/@@download/ENCFF000YYX.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YYY bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YZJ 815564599 Peggy Farnham, USC deaa992468195b8ac836a78c12adf363 https://www.encodeproject.org/files/ENCFF000YYY/@@download/ENCFF000YYY.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YYZ bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOQ 214083 Peggy Farnham, USC 978bdc04fab12c319b081f74c45186c4 https://www.encodeproject.org/files/ENCFF000YYZ/@@download/ENCFF000YYZ.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZA bigWig signal ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 337256050 Peggy Farnham, USC 61ad54a0eb0844822cef5e416848d24e https://www.encodeproject.org/files/ENCFF000YZA/@@download/ENCFF000YZA.bigWig hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZH fastq reads ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 1249353960 Peggy Farnham, USC dadbed28aa7fcf1e4896344fa4e2b6f8 https://www.encodeproject.org/files/ENCFF000YZH/@@download/ENCFF000YZH.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZJ fastq reads ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 686668626 Peggy Farnham, USC 738a51681d76ac941299c275fcfc91a7 https://www.encodeproject.org/files/ENCFF000YZJ/@@download/ENCFF000YZJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOQ bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 59113 Peggy Farnham, USC 53b97f9d370e39582467b6d40f7512e7 https://www.encodeproject.org/files/ENCFF001VOQ/@@download/ENCFF001VOQ.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CXY bed narrowPeak optimal idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 89035 ENCODE Consortium Analysis Working Group 75566ac70f8c0b67ab237afdd882c571 https://www.encodeproject.org/files/ENCFF002CXY/@@download/ENCFF002CXY.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF485AKH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXY 259935 ENCODE Consortium 94775d645d7266b4f0a4770811f9b9dc https://www.encodeproject.org/files/ENCFF485AKH/@@download/ENCFF485AKH.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF728IYF bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YZH, ENCFF643CGH 413270623 ENCODE Processing Pipeline f504360768fc757cce7d062bd631cc71 https://www.encodeproject.org/files/ENCFF728IYF/@@download/ENCFF728IYF.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF422PHA bigWig fold change over control ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF728IYF, ENCFF874YYW 352602789 ENCODE Processing Pipeline f3c04344187489a7f6c98a961d005828 https://www.encodeproject.org/files/ENCFF422PHA/@@download/ENCFF422PHA.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF437SIB bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF611CFB 13081537 ENCODE Processing Pipeline de23e40d937d560a738e5cdf01b9393c https://www.encodeproject.org/files/ENCFF437SIB/@@download/ENCFF437SIB.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF690WNQ bed narrowPeak optimal idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF540CBP, ENCFF611CFB, ENCFF613LAW 75317 ENCODE Processing Pipeline b4dbf7b0808315c0ca7fe2235b961f76 https://www.encodeproject.org/files/ENCFF690WNQ/@@download/ENCFF690WNQ.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF567YZX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF910AUJ 177464 ENCODE Processing Pipeline 0bb0b15e78c8295b62a68cf48366af75 https://www.encodeproject.org/files/ENCFF567YZX/@@download/ENCFF567YZX.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF874YYW bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YZJ, ENCFF643CGH 272165124 ENCODE Processing Pipeline 6993a94656f7605bf97222083d85a80a https://www.encodeproject.org/files/ENCFF874YYW/@@download/ENCFF874YYW.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF129KLA bigWig signal p-value ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF728IYF, ENCFF874YYW 432407874 ENCODE Processing Pipeline 201ef83b7e0fd5f84e657c892f1ccdea https://www.encodeproject.org/files/ENCFF129KLA/@@download/ENCFF129KLA.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF701DUO bam unfiltered alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YZH, ENCFF643CGH 1434423993 ENCODE Processing Pipeline 1781b80f6ef066362ba8cba7578714e4 https://www.encodeproject.org/files/ENCFF701DUO/@@download/ENCFF701DUO.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF282RIL bigWig signal p-value ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF874YYW 376072399 ENCODE Processing Pipeline d39a2714729172048bc57e6b55618694 https://www.encodeproject.org/files/ENCFF282RIL/@@download/ENCFF282RIL.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF687QNU bigWig fold change over control ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF874YYW 158502781 ENCODE Processing Pipeline a4e9b126c6396765537e3c5faff058a8 https://www.encodeproject.org/files/ENCFF687QNU/@@download/ENCFF687QNU.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF540CBP bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF728IYF 5248060 ENCODE Processing Pipeline ede423f58afd63d285ed5c1b8b464c01 https://www.encodeproject.org/files/ENCFF540CBP/@@download/ENCFF540CBP.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF546XJX bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF613LAW 7769241 ENCODE Processing Pipeline a513e1e86eaf8174ef8b50c30164b516 https://www.encodeproject.org/files/ENCFF546XJX/@@download/ENCFF546XJX.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF910AUJ bed narrowPeak conservative idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF540CBP, ENCFF611CFB, ENCFF613LAW 59636 ENCODE Processing Pipeline 9dfd97e709c9cc1a8860fc1a39014f6f https://www.encodeproject.org/files/ENCFF910AUJ/@@download/ENCFF910AUJ.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF118HRB bigWig signal p-value ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF728IYF 379320957 ENCODE Processing Pipeline 50dcb6b926ee2155f8042c32d357f226 https://www.encodeproject.org/files/ENCFF118HRB/@@download/ENCFF118HRB.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF139NEQ bigWig fold change over control ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF728IYF 247462832 ENCODE Processing Pipeline 037e80cdec9395fb5b001c8cf4726f32 https://www.encodeproject.org/files/ENCFF139NEQ/@@download/ENCFF139NEQ.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF215AYB bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF540CBP 12876865 ENCODE Processing Pipeline 190d404ee732c189b5f5cfb7b5783a54 https://www.encodeproject.org/files/ENCFF215AYB/@@download/ENCFF215AYB.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF727DQN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF690WNQ 203444 ENCODE Processing Pipeline 714355e6723aeb81c3a8b9248db7bd8a https://www.encodeproject.org/files/ENCFF727DQN/@@download/ENCFF727DQN.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF534VEA bam unfiltered alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YZJ, ENCFF643CGH 817695921 ENCODE Processing Pipeline 791dc65709fe3836b04cd5aeebd9044e https://www.encodeproject.org/files/ENCFF534VEA/@@download/ENCFF534VEA.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF613LAW bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF874YYW 3394408 ENCODE Processing Pipeline 9f1adf22b56621e24e4abf84c713ec69 https://www.encodeproject.org/files/ENCFF613LAW/@@download/ENCFF613LAW.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF611CFB bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF728IYF, ENCFF874YYW 5748030 ENCODE Processing Pipeline d6c7519ab4c6f2d248ba03d1cd5f9b7e https://www.encodeproject.org/files/ENCFF611CFB/@@download/ENCFF611CFB.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF247BJO bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YZH, ENCFF807MUK 413767054 ENCODE Processing Pipeline 03cb1ee4fef50eed650cbbf99c2d9113 https://www.encodeproject.org/files/ENCFF247BJO/@@download/ENCFF247BJO.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF860RUD bam unfiltered alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YZJ, ENCFF807MUK 816288752 ENCODE Processing Pipeline 82476065eef62bddf48cabb4f80528d4 https://www.encodeproject.org/files/ENCFF860RUD/@@download/ENCFF860RUD.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF210CIB bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YZJ, ENCFF807MUK 272527320 ENCODE Processing Pipeline 24073cac02e29038e8dab61ca30a5c1c https://www.encodeproject.org/files/ENCFF210CIB/@@download/ENCFF210CIB.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF385SUJ bigWig signal p-value ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF247BJO 356617988 ENCODE Processing Pipeline afec9cae273970ba66bd2a4a19c1b273 https://www.encodeproject.org/files/ENCFF385SUJ/@@download/ENCFF385SUJ.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF184LHT bam unfiltered alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YZH, ENCFF807MUK 1431498383 ENCODE Processing Pipeline 4ddab7d0b8c7191b0a25e9d7a2df61ce https://www.encodeproject.org/files/ENCFF184LHT/@@download/ENCFF184LHT.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF980GCB bigWig signal p-value ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF210CIB 377535772 ENCODE Processing Pipeline 2716828d46f9950ed8fa98b1d06520fe https://www.encodeproject.org/files/ENCFF980GCB/@@download/ENCFF980GCB.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF417WRG bigWig fold change over control ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF210CIB, ENCFF247BJO 350302072 ENCODE Processing Pipeline 939b13f9c47dc296b1a0e65d039c17d9 https://www.encodeproject.org/files/ENCFF417WRG/@@download/ENCFF417WRG.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF463JJS bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF247BJO 5345657 ENCODE Processing Pipeline 3431b39818c317d9293ded2e754c7f64 https://www.encodeproject.org/files/ENCFF463JJS/@@download/ENCFF463JJS.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF269JVH bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF210CIB 3458692 ENCODE Processing Pipeline a8f02fb68b875e901a7c8caea5dd4008 https://www.encodeproject.org/files/ENCFF269JVH/@@download/ENCFF269JVH.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF365HOJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF294EHN 201314 ENCODE Processing Pipeline 8349504f453cd40c9e94a9ede8560fde https://www.encodeproject.org/files/ENCFF365HOJ/@@download/ENCFF365HOJ.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF891JVV bigWig signal p-value ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF210CIB, ENCFF247BJO 402142065 ENCODE Processing Pipeline 70fe5aff6cf3e10a3e28a62f1d39cb56 https://www.encodeproject.org/files/ENCFF891JVV/@@download/ENCFF891JVV.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF187VPA bigWig fold change over control ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF210CIB 158021218 ENCODE Processing Pipeline c6404dd74e9b79456bf450eb95e474aa https://www.encodeproject.org/files/ENCFF187VPA/@@download/ENCFF187VPA.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF566ENS bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF269JVH 7854052 ENCODE Processing Pipeline 9601ff5131505cacf26605c80fb824c2 https://www.encodeproject.org/files/ENCFF566ENS/@@download/ENCFF566ENS.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF422XHH bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF445HEP 13071260 ENCODE Processing Pipeline 1d2e072d90419991e3427d5d6de89639 https://www.encodeproject.org/files/ENCFF422XHH/@@download/ENCFF422XHH.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF865APC bed narrowPeak conservative idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF269JVH, ENCFF445HEP, ENCFF463JJS 60744 ENCODE Processing Pipeline b5888e91a655043773b77bd7a9da9729 https://www.encodeproject.org/files/ENCFF865APC/@@download/ENCFF865APC.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF763JNS bigWig fold change over control ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF247BJO 238056518 ENCODE Processing Pipeline fd01182bf2cea1bdc0ddf8eeecd47f06 https://www.encodeproject.org/files/ENCFF763JNS/@@download/ENCFF763JNS.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF445HEP bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF210CIB, ENCFF247BJO 5768659 ENCODE Processing Pipeline 936c0f9544eb861a2629a69dacdac214 https://www.encodeproject.org/files/ENCFF445HEP/@@download/ENCFF445HEP.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF294EHN bed narrowPeak optimal idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF269JVH, ENCFF445HEP, ENCFF463JJS 74645 ENCODE Processing Pipeline f88de9d2471f83c6198379e4cbf8920a https://www.encodeproject.org/files/ENCFF294EHN/@@download/ENCFF294EHN.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF255LLS bigBed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF463JJS 12868827 ENCODE Processing Pipeline 45d69ad102bead8367410ef25dc3d559 https://www.encodeproject.org/files/ENCFF255LLS/@@download/ENCFF255LLS.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF438XQT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF865APC 178965 ENCODE Processing Pipeline 56dc6eda91a8c0c2722f339f3330e9eb https://www.encodeproject.org/files/ENCFF438XQT/@@download/ENCFF438XQT.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF310ZRA bam unfiltered alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF711HKZ, ENCFF715IBV, ENCFF807MUK 4258779237 ENCODE Processing Pipeline 0da526c5469b0d98336166beb9d6754f https://www.encodeproject.org/files/ENCFF310ZRA/@@download/ENCFF310ZRA.bam hg19 released low read depth ENCFF573AQG bam unfiltered alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF645HBN, ENCFF807MUK, ENCFF890KLF 3261571622 ENCODE Processing Pipeline 037e222d70d7e93a9c777fba9e5668af https://www.encodeproject.org/files/ENCFF573AQG/@@download/ENCFF573AQG.bam hg19 released low read depth ENCFF645HBN fastq reads ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF890KLF 1483409393 Michael Snyder, Stanford 1ce4a3ab109fd0f379e38d6929e35430 SRA:SRR5111106 https://www.encodeproject.org/files/ENCFF645HBN/@@download/ENCFF645HBN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF715IBV fastq reads ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF711HKZ 1977538350 Michael Snyder, Stanford cfe4adff9421a1eb4bfaf5b2bd377bed SRA:SRR5111105 https://www.encodeproject.org/files/ENCFF715IBV/@@download/ENCFF715IBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF711HKZ fastq reads ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF715IBV 1923841501 Michael Snyder, Stanford fedf288c5e0c3e7e520ef679755c481d SRA:SRR5111105 https://www.encodeproject.org/files/ENCFF711HKZ/@@download/ENCFF711HKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF890KLF fastq reads ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF645HBN 1428020487 Michael Snyder, Stanford 175eac97e1896f8a17f5404594e926e4 SRA:SRR5111106 https://www.encodeproject.org/files/ENCFF890KLF/@@download/ENCFF890KLF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF349GIB bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF645HBN, ENCFF807MUK, ENCFF890KLF 2835939759 ENCODE Processing Pipeline 8660a1f54ccbcf82edb1f72bab31db57 https://www.encodeproject.org/files/ENCFF349GIB/@@download/ENCFF349GIB.bam hg19 released low read depth ENCFF045NGS bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF711HKZ, ENCFF715IBV, ENCFF807MUK 3609436137 ENCODE Processing Pipeline 0958e21bb8a25ecddda79ea3d26b5d0e https://www.encodeproject.org/files/ENCFF045NGS/@@download/ENCFF045NGS.bam hg19 released low read depth ENCFF547KLI bigWig signal p-value ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF045NGS, ENCFF581ZJL 1007964017 ENCODE Processing Pipeline 607a1d8a0c204c85364ea2d39bf57890 https://www.encodeproject.org/files/ENCFF547KLI/@@download/ENCFF547KLI.bigWig hg19 released low read depth ENCFF153OEX bigWig signal p-value ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF349GIB 833426324 ENCODE Processing Pipeline dba6d2433cc759443a8554a5e9debf42 https://www.encodeproject.org/files/ENCFF153OEX/@@download/ENCFF153OEX.bigWig hg19 released low read depth ENCFF596SDW bigWig signal p-value ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF045NGS, ENCFF051LWI, ENCFF349GIB, ENCFF581ZJL 1886683189 ENCODE Processing Pipeline 56c7581f8e79a8ffed15d2600cf8d80c https://www.encodeproject.org/files/ENCFF596SDW/@@download/ENCFF596SDW.bigWig hg19 released low read depth ENCFF357GMM bigWig fold change over control ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF045NGS, ENCFF581ZJL 1113271211 ENCODE Processing Pipeline 233911baf713f9b226dd48c672df7335 https://www.encodeproject.org/files/ENCFF357GMM/@@download/ENCFF357GMM.bigWig hg19 released low read depth ENCFF137RWM bigWig fold change over control ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF349GIB 970001629 ENCODE Processing Pipeline 39ad091a002aba403f2372d1a7b8e0c9 https://www.encodeproject.org/files/ENCFF137RWM/@@download/ENCFF137RWM.bigWig hg19 released low read depth ENCFF965WZE bigWig fold change over control ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF045NGS, ENCFF051LWI, ENCFF349GIB, ENCFF581ZJL 1929242193 ENCODE Processing Pipeline 5b71a1a83f44144c4c2fee4ff39ef18e https://www.encodeproject.org/files/ENCFF965WZE/@@download/ENCFF965WZE.bigWig hg19 released low read depth ENCFF131ZOO bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF045NGS, ENCFF581ZJL 7152432 ENCODE Processing Pipeline 022b59d0cfcc0164573c320d5b12e414 https://www.encodeproject.org/files/ENCFF131ZOO/@@download/ENCFF131ZOO.bed.gz hg19 released low read depth ENCFF985JTP bigBed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF131ZOO 12844346 ENCODE Processing Pipeline 54c020dbf6bef582f2d5a00447d35867 https://www.encodeproject.org/files/ENCFF985JTP/@@download/ENCFF985JTP.bigBed hg19 released low read depth ENCFF716AIG bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF349GIB 7115295 ENCODE Processing Pipeline e9e72796ae9f43e88c1043dfb722ab1f https://www.encodeproject.org/files/ENCFF716AIG/@@download/ENCFF716AIG.bed.gz hg19 released low read depth ENCFF877PNB bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF045NGS, ENCFF051LWI, ENCFF349GIB, ENCFF581ZJL 7258123 ENCODE Processing Pipeline 3b3b1152258dd1fb93fc01cea2dc3b3f https://www.encodeproject.org/files/ENCFF877PNB/@@download/ENCFF877PNB.bed.gz hg19 released low read depth ENCFF955JOG bigBed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF716AIG 12701712 ENCODE Processing Pipeline 718c1a79e1e6cadb3e132b163479c185 https://www.encodeproject.org/files/ENCFF955JOG/@@download/ENCFF955JOG.bigBed hg19 released low read depth ENCFF056BBY bigBed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF877PNB 12612012 ENCODE Processing Pipeline 66a4d1b8729ffe39786f8066cc3cc494 https://www.encodeproject.org/files/ENCFF056BBY/@@download/ENCFF056BBY.bigBed hg19 released low read depth ENCFF031NVM bam unfiltered alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF643CGH, ENCFF645HBN, ENCFF890KLF 3264301156 ENCODE Processing Pipeline 82e40f6cf315c83ef52b5673bc258ee5 https://www.encodeproject.org/files/ENCFF031NVM/@@download/ENCFF031NVM.bam GRCh38 released low read depth ENCFF619PYG bam unfiltered alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF643CGH, ENCFF711HKZ, ENCFF715IBV 4261570400 ENCODE Processing Pipeline 9b2860ec9948248df0f8b77b2e281bad https://www.encodeproject.org/files/ENCFF619PYG/@@download/ENCFF619PYG.bam GRCh38 released low read depth ENCFF205VDU bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF643CGH, ENCFF645HBN, ENCFF890KLF 2836789006 ENCODE Processing Pipeline 4054a915e0d4ae05812f9cde717f4762 https://www.encodeproject.org/files/ENCFF205VDU/@@download/ENCFF205VDU.bam GRCh38 released low read depth ENCFF109OWW bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF643CGH, ENCFF711HKZ, ENCFF715IBV 3610399957 ENCODE Processing Pipeline c1225de37b097c34e6200c8a14a5166e https://www.encodeproject.org/files/ENCFF109OWW/@@download/ENCFF109OWW.bam GRCh38 released low read depth ENCFF274CVH bigWig signal p-value ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF109OWW, ENCFF910IKB 1241138500 ENCODE Processing Pipeline c91a6e11928590cb01346868968298a3 https://www.encodeproject.org/files/ENCFF274CVH/@@download/ENCFF274CVH.bigWig GRCh38 released low read depth ENCFF366WBS bigWig signal p-value ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF205VDU, ENCFF227IZS 1039458976 ENCODE Processing Pipeline 2aaa69805f87439f2b4803550cdfddf0 https://www.encodeproject.org/files/ENCFF366WBS/@@download/ENCFF366WBS.bigWig GRCh38 released low read depth ENCFF739KZJ bigWig signal p-value ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF109OWW, ENCFF205VDU, ENCFF227IZS, ENCFF910IKB 1632740532 ENCODE Processing Pipeline faf0a1c3b956f7c94f1ebd3afab1e961 https://www.encodeproject.org/files/ENCFF739KZJ/@@download/ENCFF739KZJ.bigWig GRCh38 released low read depth ENCFF674FKK bigWig fold change over control ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF109OWW, ENCFF910IKB 1116264815 ENCODE Processing Pipeline 772f618204b26209faf877b974a7eaec https://www.encodeproject.org/files/ENCFF674FKK/@@download/ENCFF674FKK.bigWig GRCh38 released low read depth ENCFF087SZP bigWig fold change over control ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF205VDU, ENCFF227IZS 978430173 ENCODE Processing Pipeline 460238852b2de8a6c63b587f89107453 https://www.encodeproject.org/files/ENCFF087SZP/@@download/ENCFF087SZP.bigWig GRCh38 released low read depth ENCFF042QGF bigWig fold change over control ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF109OWW, ENCFF205VDU, ENCFF227IZS, ENCFF910IKB 1922900708 ENCODE Processing Pipeline 5d711e9b389d3bb92ae3eaf2ffd9aabe https://www.encodeproject.org/files/ENCFF042QGF/@@download/ENCFF042QGF.bigWig GRCh38 released low read depth ENCFF577RMM bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF109OWW, ENCFF910IKB 7091293 ENCODE Processing Pipeline dc741022ab20d810ebe9b7d004aa9d47 https://www.encodeproject.org/files/ENCFF577RMM/@@download/ENCFF577RMM.bed.gz GRCh38 released low read depth ENCFF420TBJ bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF205VDU, ENCFF227IZS 7063665 ENCODE Processing Pipeline b2827728db30e54b6aa62dff650655ba https://www.encodeproject.org/files/ENCFF420TBJ/@@download/ENCFF420TBJ.bed.gz GRCh38 released low read depth ENCFF600USA bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF109OWW, ENCFF205VDU, ENCFF227IZS, ENCFF910IKB 7226046 ENCODE Processing Pipeline ab5c33b904cbeb9e957f8d1a0d50e473 https://www.encodeproject.org/files/ENCFF600USA/@@download/ENCFF600USA.bed.gz GRCh38 released low read depth ENCFF907GJA bigBed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF577RMM 12852043 ENCODE Processing Pipeline 6c23792a2f238a26bad251b35450e482 https://www.encodeproject.org/files/ENCFF907GJA/@@download/ENCFF907GJA.bigBed GRCh38 released low read depth ENCFF263BLM bigBed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF420TBJ 12714133 ENCODE Processing Pipeline 354c6cce02433ce9260af9e1bdad7063 https://www.encodeproject.org/files/ENCFF263BLM/@@download/ENCFF263BLM.bigBed GRCh38 released low read depth ENCFF737PFG bigBed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF600USA 12593608 ENCODE Processing Pipeline ac6a2b03ffb82c9a943bfafccd6a82a5 https://www.encodeproject.org/files/ENCFF737PFG/@@download/ENCFF737PFG.bigBed GRCh38 released low read depth ENCFF394AJV bed narrowPeak conservative idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF420TBJ, ENCFF577RMM, ENCFF600USA 443437 ENCODE Processing Pipeline 21c603fc21897479d75361f2740eceef https://www.encodeproject.org/files/ENCFF394AJV/@@download/ENCFF394AJV.bed.gz GRCh38 released low read depth ENCFF267LTL bigBed narrowPeak conservative idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF394AJV 1050119 ENCODE Processing Pipeline 3d2dc5c5ace4d53862f774a973758823 https://www.encodeproject.org/files/ENCFF267LTL/@@download/ENCFF267LTL.bigBed GRCh38 released low read depth ENCFF007EEV bed narrowPeak optimal idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF420TBJ, ENCFF577RMM, ENCFF600USA 489096 ENCODE Processing Pipeline d9037895850efa7df09bc263f8c6c129 https://www.encodeproject.org/files/ENCFF007EEV/@@download/ENCFF007EEV.bed.gz GRCh38 released low read depth ENCFF686QVV bigBed narrowPeak optimal idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF007EEV 1137879 ENCODE Processing Pipeline e5c718f6c24aa55ab2984c2931b0e655 https://www.encodeproject.org/files/ENCFF686QVV/@@download/ENCFF686QVV.bigBed GRCh38 released low read depth ENCFF015AWN bed narrowPeak conservative idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF131ZOO, ENCFF716AIG, ENCFF877PNB 372398 ENCODE Processing Pipeline ce33b81aff22f0d83233fef0a6edaa58 https://www.encodeproject.org/files/ENCFF015AWN/@@download/ENCFF015AWN.bed.gz hg19 released low read depth ENCFF974LSI bigBed narrowPeak conservative idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF015AWN 764065 ENCODE Processing Pipeline cfeaf6514bfe203c1654aa3d509348f7 https://www.encodeproject.org/files/ENCFF974LSI/@@download/ENCFF974LSI.bigBed hg19 released low read depth ENCFF973LDQ bed narrowPeak optimal idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF131ZOO, ENCFF716AIG, ENCFF877PNB 405803 ENCODE Processing Pipeline 5aced2d7e389eb5908524ecfd6ae9e02 https://www.encodeproject.org/files/ENCFF973LDQ/@@download/ENCFF973LDQ.bed.gz hg19 released low read depth ENCFF939RJD bigBed narrowPeak optimal idr thresholded peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF973LDQ 814904 ENCODE Processing Pipeline bcdfde7d735d776ceb7dc6888ce21f36 https://www.encodeproject.org/files/ENCFF939RJD/@@download/ENCFF939RJD.bigBed hg19 released low read depth ENCFF325WEY fastq reads ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1455378576 Richard Myers, HAIB 12b1ea23fd356d3ba7356a0155f56004 SRA:SRR5339148 https://www.encodeproject.org/files/ENCFF325WEY/@@download/ENCFF325WEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF911VFY fastq reads ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1381200283 Richard Myers, HAIB e2ecb10fb1809fc63dd4524fb1805bbc SRA:SRR5339149 https://www.encodeproject.org/files/ENCFF911VFY/@@download/ENCFF911VFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF587OET bam unfiltered alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF325WEY, ENCFF643CGH 1761695322 ENCODE Processing Pipeline eee8ad514c93d5c840bb605f6f85237a https://www.encodeproject.org/files/ENCFF587OET/@@download/ENCFF587OET.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF020KTO bam unfiltered alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF911VFY 1652318320 ENCODE Processing Pipeline f6593d55e222623ebaef56f9beafffb3 https://www.encodeproject.org/files/ENCFF020KTO/@@download/ENCFF020KTO.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF047EZI bam unfiltered alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF325WEY, ENCFF807MUK 1756231857 ENCODE Processing Pipeline 9ae075dd7f570ead1eab29ada102e73d https://www.encodeproject.org/files/ENCFF047EZI/@@download/ENCFF047EZI.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617JCI bam unfiltered alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF911VFY 1657112171 ENCODE Processing Pipeline d8beba5b67dc54eab282cbec3a892539 https://www.encodeproject.org/files/ENCFF617JCI/@@download/ENCFF617JCI.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF785WJN bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF325WEY, ENCFF643CGH 1377582799 ENCODE Processing Pipeline e923e49f41d72070978a5893e1527f68 https://www.encodeproject.org/files/ENCFF785WJN/@@download/ENCFF785WJN.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF239NUC bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF911VFY 1200253465 ENCODE Processing Pipeline 48fae87ce0047fb260cec973f4a06cab https://www.encodeproject.org/files/ENCFF239NUC/@@download/ENCFF239NUC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF581SJH bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF325WEY, ENCFF807MUK 1376251380 ENCODE Processing Pipeline 11aa85d605420010efe83263a7c86924 https://www.encodeproject.org/files/ENCFF581SJH/@@download/ENCFF581SJH.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178FQM bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF911VFY 1201205256 ENCODE Processing Pipeline 5f2b5ee9c8b65ebd63d1beba001cb941 https://www.encodeproject.org/files/ENCFF178FQM/@@download/ENCFF178FQM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF904CUK bigWig signal p-value ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF178FQM 572586459 ENCODE Processing Pipeline 5f66a7c8b65c38f0c99e0c54ca029a58 https://www.encodeproject.org/files/ENCFF904CUK/@@download/ENCFF904CUK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF303QBG bigWig signal p-value ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF785WJN 593631221 ENCODE Processing Pipeline 6892843fd84831dc6896aa6c205cac22 https://www.encodeproject.org/files/ENCFF303QBG/@@download/ENCFF303QBG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF458HJL bigWig signal p-value ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF178FQM, ENCFF785WJN 643205673 ENCODE Processing Pipeline 703b030328ba2915b64b1c76f8225991 https://www.encodeproject.org/files/ENCFF458HJL/@@download/ENCFF458HJL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF243VMQ bigWig fold change over control ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF178FQM 460212329 ENCODE Processing Pipeline 0ef37a86db04f23892bf243f304b64f5 https://www.encodeproject.org/files/ENCFF243VMQ/@@download/ENCFF243VMQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF452RWY bigWig fold change over control ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF785WJN 476424243 ENCODE Processing Pipeline 1bbb13d5945d0aea39f54df6ee1058f4 https://www.encodeproject.org/files/ENCFF452RWY/@@download/ENCFF452RWY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF027EMM bigWig fold change over control ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF178FQM, ENCFF785WJN 799739574 ENCODE Processing Pipeline 3c2c52b12430ce23bdbada35f2cf1fa6 https://www.encodeproject.org/files/ENCFF027EMM/@@download/ENCFF027EMM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF144UDC bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF178FQM 4734456 ENCODE Processing Pipeline 85fe6434103f5aa1a37cbeac38110021 https://www.encodeproject.org/files/ENCFF144UDC/@@download/ENCFF144UDC.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF233GRG bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF785WJN 5216380 ENCODE Processing Pipeline 533b1436e544b8cfb34624c05884d9c7 https://www.encodeproject.org/files/ENCFF233GRG/@@download/ENCFF233GRG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF257JTS bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF178FQM, ENCFF785WJN 3909625 ENCODE Processing Pipeline 7d4e87c170db377b7050936c7dd4686b https://www.encodeproject.org/files/ENCFF257JTS/@@download/ENCFF257JTS.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF535ZJX bigBed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF144UDC 10855517 ENCODE Processing Pipeline abb344b9e25d9a4ba56c2f19cef46c98 https://www.encodeproject.org/files/ENCFF535ZJX/@@download/ENCFF535ZJX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF297TDF bigBed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF233GRG 11065641 ENCODE Processing Pipeline 31dc6135d3a01757150a26c496d6dbc3 https://www.encodeproject.org/files/ENCFF297TDF/@@download/ENCFF297TDF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF975ZEI bigBed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF257JTS 8581709 ENCODE Processing Pipeline bf7a862015e07edd4bb6d2eadf9d2c44 https://www.encodeproject.org/files/ENCFF975ZEI/@@download/ENCFF975ZEI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF587IRE bigBed narrowPeak conservative idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF554QVX 391739 ENCODE Processing Pipeline 58d51e4ada99541c4a98c9dc4a8a5ef0 https://www.encodeproject.org/files/ENCFF587IRE/@@download/ENCFF587IRE.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF554QVX bed narrowPeak conservative idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF144UDC, ENCFF233GRG, ENCFF257JTS, ENCFF419RSJ 186824 ENCODE Processing Pipeline adca6767931e53a376a69611bcdd4cd0 https://www.encodeproject.org/files/ENCFF554QVX/@@download/ENCFF554QVX.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF295CUB bed narrowPeak optimal idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF144UDC, ENCFF233GRG, ENCFF257JTS, ENCFF419RSJ 231114 ENCODE Processing Pipeline 06768d1ab4e618567fd2108fb8fec386 https://www.encodeproject.org/files/ENCFF295CUB/@@download/ENCFF295CUB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF828QQY bigBed narrowPeak optimal idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF295CUB 455754 ENCODE Processing Pipeline 982887b9a12c9d0f57354f61e1e1b3cd https://www.encodeproject.org/files/ENCFF828QQY/@@download/ENCFF828QQY.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683NKJ bigWig signal p-value ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239NUC 1066508165 ENCODE Processing Pipeline 3a4f455d38d0d850b4187ec7904c6490 https://www.encodeproject.org/files/ENCFF683NKJ/@@download/ENCFF683NKJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795GFW bigWig signal p-value ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF581SJH 1256229995 ENCODE Processing Pipeline 8045704faa8fd3f93e4708ef05f1fde4 https://www.encodeproject.org/files/ENCFF795GFW/@@download/ENCFF795GFW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF162FKC bigWig signal p-value ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF239NUC, ENCFF581SJH 1245254477 ENCODE Processing Pipeline 6b97ec3e5a072a8d46b41f3eef31bd2e https://www.encodeproject.org/files/ENCFF162FKC/@@download/ENCFF162FKC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF708ULS bigWig fold change over control ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239NUC 824081428 ENCODE Processing Pipeline f8d5b61eee963bd6a5e9729cfca2c212 https://www.encodeproject.org/files/ENCFF708ULS/@@download/ENCFF708ULS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF721HKQ bigWig fold change over control ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF581SJH 905176879 ENCODE Processing Pipeline 429f38f63ccaf20d1feba59c83ce4016 https://www.encodeproject.org/files/ENCFF721HKQ/@@download/ENCFF721HKQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF322YEC bigWig fold change over control ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF239NUC, ENCFF581SJH 1341158190 ENCODE Processing Pipeline fd246903a79652d7571de4f40a9f5edf https://www.encodeproject.org/files/ENCFF322YEC/@@download/ENCFF322YEC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF036XYH bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239NUC 5811044 ENCODE Processing Pipeline 8c0582824968db8c07dc0c0a1ae21c67 https://www.encodeproject.org/files/ENCFF036XYH/@@download/ENCFF036XYH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF869IAV bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF239NUC, ENCFF581SJH 6593714 ENCODE Processing Pipeline bb581d2db0e9605987966e27392e33fd https://www.encodeproject.org/files/ENCFF869IAV/@@download/ENCFF869IAV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF776ZOB bigBed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF036XYH 11365085 ENCODE Processing Pipeline bc4c66c2d510cfa50e75d38f818d0c09 https://www.encodeproject.org/files/ENCFF776ZOB/@@download/ENCFF776ZOB.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF632ICT bigBed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF399NVO 11269019 ENCODE Processing Pipeline 6eb075a7dfca7709ab9e317d63130663 https://www.encodeproject.org/files/ENCFF632ICT/@@download/ENCFF632ICT.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399NVO bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF581SJH 5975742 ENCODE Processing Pipeline 413f6760f41103dd1844ac503bd7d81b https://www.encodeproject.org/files/ENCFF399NVO/@@download/ENCFF399NVO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF288MWR bigBed narrowPeak conservative idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF691BBP 407626 ENCODE Processing Pipeline 98062452c4af427c6ee56d4f59ec7ae6 https://www.encodeproject.org/files/ENCFF288MWR/@@download/ENCFF288MWR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF319NZE bigBed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF869IAV 13538272 ENCODE Processing Pipeline cfa0f7406acbc4fa26bec340602adec3 https://www.encodeproject.org/files/ENCFF319NZE/@@download/ENCFF319NZE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF691BBP bed narrowPeak conservative idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF036XYH, ENCFF399NVO, ENCFF869IAV 187959 ENCODE Processing Pipeline 1ec6dea0af30535bd540007855da628b https://www.encodeproject.org/files/ENCFF691BBP/@@download/ENCFF691BBP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF007HXS bed narrowPeak optimal idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF036XYH, ENCFF399NVO, ENCFF869IAV 230704 ENCODE Processing Pipeline fbdcc436a522c0dee1037d893eced7d3 https://www.encodeproject.org/files/ENCFF007HXS/@@download/ENCFF007HXS.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685PAG bigBed narrowPeak optimal idr thresholded peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF007HXS 470194 ENCODE Processing Pipeline 3ab1579af902342b982b0a2b975f0c82 https://www.encodeproject.org/files/ENCFF685PAG/@@download/ENCFF685PAG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961BDT fastq reads ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 1 74 single-ended 1813066270 Bradley Bernstein, Broad 2ebe5553bca3a24ccec18e8249d4f904 SRA:SRR5832926 https://www.encodeproject.org/files/ENCFF961BDT/@@download/ENCFF961BDT.fastq.gz Illumina HiSeq 2500 /files/ENCFF206YPV/, /files/ENCFF835QIF/ released antibody characterized with exemption, inconsistent control run_type NTR biosample ENCFF281BEW fastq reads ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 1 76 single-ended 1864437182 Bradley Bernstein, Broad 14f81f06d915605dad09185177b7c45e SRA:SRR5832927 https://www.encodeproject.org/files/ENCFF281BEW/@@download/ENCFF281BEW.fastq.gz Illumina HiSeq 2500 /files/ENCFF082OUX/, /files/ENCFF158HCZ/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/ released antibody characterized with exemption, inconsistent control run_type NTR biosample ENCFF396SSG bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 74 ENCFF643CGH, ENCFF961BDT 1721337473 ENCODE Processing Pipeline 271e388bf060e5e8c52d86c278a6cb48 https://www.encodeproject.org/files/ENCFF396SSG/@@download/ENCFF396SSG.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF399KST bam unfiltered alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF643CGH, ENCFF961BDT 2115703105 ENCODE Processing Pipeline 8fff7f21bb308d636f7b48feab55b4da https://www.encodeproject.org/files/ENCFF399KST/@@download/ENCFF399KST.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF009BTS fastq reads ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 1 76 single-ended 1237506090 Bradley Bernstein, Broad 55b3c14dcb5209ae233c27bf47779927 SRA:SRR5832928 https://www.encodeproject.org/files/ENCFF009BTS/@@download/ENCFF009BTS.fastq.gz Illumina HiSeq 2500 /files/ENCFF082OUX/, /files/ENCFF158HCZ/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/ released antibody characterized with exemption, inconsistent control run_type NTR biosample ENCFF831CJZ fastq reads ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 1 76 single-ended 1243359389 Bradley Bernstein, Broad f6d2e3b0134bacd0f926f2415fdabb72 SRA:SRR5832929 https://www.encodeproject.org/files/ENCFF831CJZ/@@download/ENCFF831CJZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF082OUX/, /files/ENCFF158HCZ/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/ released antibody characterized with exemption, inconsistent control run_type NTR biosample ENCFF208OIJ bam unfiltered alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 74 ENCFF807MUK, ENCFF961BDT 2109105109 ENCODE Processing Pipeline 7e64fce145ac59e4680e3ebdde00dea2 https://www.encodeproject.org/files/ENCFF208OIJ/@@download/ENCFF208OIJ.bam hg19 released antibody characterized with exemption NTR biosample ENCFF293YFD bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 74 ENCFF807MUK, ENCFF961BDT 1720080674 ENCODE Processing Pipeline 37ca9c35e32c55205c076781b134c11e https://www.encodeproject.org/files/ENCFF293YFD/@@download/ENCFF293YFD.bam hg19 released antibody characterized with exemption NTR biosample ENCFF798HTX bam unfiltered alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 76 ENCFF009BTS, ENCFF281BEW, ENCFF643CGH, ENCFF831CJZ 4398053324 ENCODE Processing Pipeline 252732e57688890bf42cf11417de5921 https://www.encodeproject.org/files/ENCFF798HTX/@@download/ENCFF798HTX.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF045XEE bam unfiltered alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 76 ENCFF009BTS, ENCFF281BEW, ENCFF807MUK, ENCFF831CJZ 4389220632 ENCODE Processing Pipeline 15b175317325636edf4ab6f622b9d04e https://www.encodeproject.org/files/ENCFF045XEE/@@download/ENCFF045XEE.bam hg19 released antibody characterized with exemption NTR biosample ENCFF274XMR bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 76 ENCFF009BTS, ENCFF281BEW, ENCFF807MUK, ENCFF831CJZ 3426483393 ENCODE Processing Pipeline 107588ae16fc5cc85f1d851adb39f9d6 https://www.encodeproject.org/files/ENCFF274XMR/@@download/ENCFF274XMR.bam hg19 released antibody characterized with exemption NTR biosample ENCFF789JOT bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 76 ENCFF009BTS, ENCFF281BEW, ENCFF643CGH, ENCFF831CJZ 3429686498 ENCODE Processing Pipeline 9f0fc1daa8ce7b4bc5a119c333aa3dc6 https://www.encodeproject.org/files/ENCFF789JOT/@@download/ENCFF789JOT.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF632OKJ bigWig signal p-value ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 1706116950 ENCODE Processing Pipeline 71a718f12ba56d94d380980bd3176382 https://www.encodeproject.org/files/ENCFF632OKJ/@@download/ENCFF632OKJ.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF538ZGI bigWig signal p-value ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF274XMR, ENCFF387KXA, ENCFF762JSN 1744275437 ENCODE Processing Pipeline 316f738f23f4470c041b7db2cc6866a2 https://www.encodeproject.org/files/ENCFF538ZGI/@@download/ENCFF538ZGI.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF684ICL bigWig signal p-value ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF175BOB, ENCFF396SSG, ENCFF615RXB 1564216879 ENCODE Processing Pipeline 8eef81f21873047bea1b29cf9c5fb49d https://www.encodeproject.org/files/ENCFF684ICL/@@download/ENCFF684ICL.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF078HWK bigWig signal p-value ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF175BOB, ENCFF615RXB, ENCFF789JOT 2079357891 ENCODE Processing Pipeline 0bd5164d8b1249f651f9e7baed533979 https://www.encodeproject.org/files/ENCFF078HWK/@@download/ENCFF078HWK.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF783ILC bigWig fold change over control ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 1604352185 ENCODE Processing Pipeline 0d1a00b1f33774cc3e44f55503803c1b https://www.encodeproject.org/files/ENCFF783ILC/@@download/ENCFF783ILC.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF146NFJ bigWig fold change over control ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF175BOB, ENCFF396SSG, ENCFF615RXB 1600027745 ENCODE Processing Pipeline 1c587d79b313eaf21e73ba7c7bf4cba3 https://www.encodeproject.org/files/ENCFF146NFJ/@@download/ENCFF146NFJ.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF516ALS bigWig fold change over control ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF175BOB, ENCFF396SSG, ENCFF615RXB, ENCFF789JOT 2335740237 ENCODE Processing Pipeline c8cd8b6035bcddd57cc8a524143b3723 https://www.encodeproject.org/files/ENCFF516ALS/@@download/ENCFF516ALS.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF552EYJ bigWig signal p-value ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF274XMR, ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 2342962807 ENCODE Processing Pipeline 3f3112a036df938f0d58693dcb3a08d1 https://www.encodeproject.org/files/ENCFF552EYJ/@@download/ENCFF552EYJ.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF075TSI bigWig fold change over control ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF274XMR, ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 2306093549 ENCODE Processing Pipeline 4241294d533d8fea1edf0292df789a3c https://www.encodeproject.org/files/ENCFF075TSI/@@download/ENCFF075TSI.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF337UGL bigBed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF915JWV 13091645 ENCODE Processing Pipeline 7874faaea8127aff61db26dbdb32400c https://www.encodeproject.org/files/ENCFF337UGL/@@download/ENCFF337UGL.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF263HNL bigWig fold change over control ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF274XMR, ENCFF387KXA, ENCFF762JSN 2035144305 ENCODE Processing Pipeline bf23b539fba4458090dc2727fd136af8 https://www.encodeproject.org/files/ENCFF263HNL/@@download/ENCFF263HNL.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF624UCY bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF274XMR, ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 7292799 ENCODE Processing Pipeline 6aa991eabfe30491854b2e923ad9e597 https://www.encodeproject.org/files/ENCFF624UCY/@@download/ENCFF624UCY.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF458HGR bigWig signal p-value ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF175BOB, ENCFF396SSG, ENCFF615RXB, ENCFF789JOT 2328282473 ENCODE Processing Pipeline ff5075ac41408596a8e14a7a9858715c https://www.encodeproject.org/files/ENCFF458HGR/@@download/ENCFF458HGR.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF909JPI bigWig fold change over control ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF175BOB, ENCFF615RXB, ENCFF789JOT 2030220871 ENCODE Processing Pipeline b83d81e33af0c92f88deb6f55482e07d https://www.encodeproject.org/files/ENCFF909JPI/@@download/ENCFF909JPI.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF112ETQ bigBed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF624UCY 12666096 ENCODE Processing Pipeline ea13b310684f6887f8db82c54cafb83b https://www.encodeproject.org/files/ENCFF112ETQ/@@download/ENCFF112ETQ.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF639YBL bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF175BOB, ENCFF396SSG, ENCFF615RXB, ENCFF789JOT 7290534 ENCODE Processing Pipeline db10673aa217562021844ad8a496e591 https://www.encodeproject.org/files/ENCFF639YBL/@@download/ENCFF639YBL.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF711KLW bed narrowPeak conservative idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF001TDO, ENCFF275QAK, ENCFF624UCY, ENCFF915JWV 393968 ENCODE Processing Pipeline 12545c46300b63a10fd629463d45c8e6 https://www.encodeproject.org/files/ENCFF711KLW/@@download/ENCFF711KLW.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF679OPL bigBed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF646ZSK 12799092 ENCODE Processing Pipeline 319715bfca388edbd885d8c745b2c00a https://www.encodeproject.org/files/ENCFF679OPL/@@download/ENCFF679OPL.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF457PCA bed narrowPeak optimal idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF001TDO, ENCFF275QAK, ENCFF624UCY, ENCFF915JWV 398387 ENCODE Processing Pipeline f73657ee4c68fe21fffa416f781b37f1 https://www.encodeproject.org/files/ENCFF457PCA/@@download/ENCFF457PCA.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF915JWV bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 6992709 ENCODE Processing Pipeline 322e598fffed3dc87b0e289302911269 https://www.encodeproject.org/files/ENCFF915JWV/@@download/ENCFF915JWV.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF320REA bed narrowPeak optimal idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF419RSJ, ENCFF622HOL, ENCFF639YBL, ENCFF646ZSK 391965 ENCODE Processing Pipeline 4208d35e4be8b072d27c757060e60a6e https://www.encodeproject.org/files/ENCFF320REA/@@download/ENCFF320REA.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF415AWX bigBed narrowPeak optimal idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF320REA 1014686 ENCODE Processing Pipeline dddfcf19baa4a1ee7ac9da7b66c48ed6 https://www.encodeproject.org/files/ENCFF415AWX/@@download/ENCFF415AWX.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF285VIK bigBed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF639YBL 12658949 ENCODE Processing Pipeline 4381af46755fc8e576f897d9b8f0e8e9 https://www.encodeproject.org/files/ENCFF285VIK/@@download/ENCFF285VIK.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF188DPS bed narrowPeak conservative idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF419RSJ, ENCFF622HOL, ENCFF639YBL, ENCFF646ZSK 390256 ENCODE Processing Pipeline 23d290c034f163034b3587dd8f4d4c75 https://www.encodeproject.org/files/ENCFF188DPS/@@download/ENCFF188DPS.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF275QAK bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF274XMR, ENCFF387KXA, ENCFF762JSN 7273636 ENCODE Processing Pipeline 24909a9398aa118c1234229d3581211d https://www.encodeproject.org/files/ENCFF275QAK/@@download/ENCFF275QAK.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF342IDX bigBed narrowPeak conservative idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF711KLW 1013671 ENCODE Processing Pipeline 1d11fd98edf7c11b03134d0f6100a081 https://www.encodeproject.org/files/ENCFF342IDX/@@download/ENCFF342IDX.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF387DEQ bigBed narrowPeak conservative idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF188DPS 1006184 ENCODE Processing Pipeline b41a3da1d587df883a6e155d920453db https://www.encodeproject.org/files/ENCFF387DEQ/@@download/ENCFF387DEQ.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF622HOL bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF175BOB, ENCFF396SSG, ENCFF615RXB 6988231 ENCODE Processing Pipeline e69e495c61e0ef9d79e6fb741b27f4c5 https://www.encodeproject.org/files/ENCFF622HOL/@@download/ENCFF622HOL.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF646ZSK bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF175BOB, ENCFF615RXB, ENCFF789JOT 7273792 ENCODE Processing Pipeline 7f4525118083fe293eb852c08e7c0815 https://www.encodeproject.org/files/ENCFF646ZSK/@@download/ENCFF646ZSK.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF961CSX bigBed narrowPeak optimal idr thresholded peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF457PCA 1027167 ENCODE Processing Pipeline 38e1d8c745b49a2d512af95ed3d87288 https://www.encodeproject.org/files/ENCFF961CSX/@@download/ENCFF961CSX.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF257YOB bigBed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF275QAK 12803608 ENCODE Processing Pipeline 2802c98cfb79d37dce3f5b82061bded5 https://www.encodeproject.org/files/ENCFF257YOB/@@download/ENCFF257YOB.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF315CUN bigBed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF622HOL 13066171 ENCODE Processing Pipeline a5e4adfc4398c5d3411f12451b24c740 https://www.encodeproject.org/files/ENCFF315CUN/@@download/ENCFF315CUN.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF601NIY fastq reads ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF888GKN 3295490004 Michael Snyder, Stanford 3ef14d8d68ffe2ec5caf7932b81557e0 SRA:SRR6213662 https://www.encodeproject.org/files/ENCFF601NIY/@@download/ENCFF601NIY.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF064VKS fastq reads ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF263XLB 4652026574 Michael Snyder, Stanford 22eaee17e459ebb81fbd8df0fab0fd26 SRA:SRR6213661 https://www.encodeproject.org/files/ENCFF064VKS/@@download/ENCFF064VKS.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF263XLB fastq reads ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF064VKS 4104856340 Michael Snyder, Stanford 7aab75269cbf744f7defc1b6a1bae277 SRA:SRR6213661 https://www.encodeproject.org/files/ENCFF263XLB/@@download/ENCFF263XLB.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF888GKN fastq reads ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF601NIY 3497070422 Michael Snyder, Stanford 7fa4bbe3fb6f4e94cf55e93d467f5243 SRA:SRR6213662 https://www.encodeproject.org/files/ENCFF888GKN/@@download/ENCFF888GKN.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF199VCV bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 100 ENCFF601NIY, ENCFF643CGH, ENCFF888GKN 3935542454 ENCODE Processing Pipeline 661d97ac809fe4332828328ec7acfb5f https://www.encodeproject.org/files/ENCFF199VCV/@@download/ENCFF199VCV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF588LHY bam unfiltered alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 100 ENCFF601NIY, ENCFF643CGH, ENCFF888GKN 6617162875 ENCODE Processing Pipeline 5a5ca8d667988067ea97f5192858ad91 https://www.encodeproject.org/files/ENCFF588LHY/@@download/ENCFF588LHY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF715SDB bam unfiltered alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 100 ENCFF064VKS, ENCFF263XLB, ENCFF643CGH 8223969071 ENCODE Processing Pipeline 3aa3620b15f8406bd0021c3a1dfeb78e https://www.encodeproject.org/files/ENCFF715SDB/@@download/ENCFF715SDB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF817LII bam unfiltered alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 100 ENCFF601NIY, ENCFF807MUK, ENCFF888GKN 6612248830 ENCODE Processing Pipeline cb1ab11351984ef7cf0a40f2083bb776 https://www.encodeproject.org/files/ENCFF817LII/@@download/ENCFF817LII.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF945VXL bam unfiltered alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 100 ENCFF064VKS, ENCFF263XLB, ENCFF807MUK 8221536908 ENCODE Processing Pipeline 4a9405c93fba7712ef24d5657001b7b5 https://www.encodeproject.org/files/ENCFF945VXL/@@download/ENCFF945VXL.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF648GJU bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 100 ENCFF601NIY, ENCFF807MUK, ENCFF888GKN 3930067776 ENCODE Processing Pipeline 6c1094596720a5f0b35f8975c3e34fa8 https://www.encodeproject.org/files/ENCFF648GJU/@@download/ENCFF648GJU.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF759ASI bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 100 ENCFF064VKS, ENCFF263XLB, ENCFF643CGH 4825758879 ENCODE Processing Pipeline afab1acf5859db8b39b53b7eff53db68 https://www.encodeproject.org/files/ENCFF759ASI/@@download/ENCFF759ASI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF342NSJ bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 100 ENCFF064VKS, ENCFF263XLB, ENCFF807MUK 4819303846 ENCODE Processing Pipeline 67cf408f765cfc1f6f8319dc11f21018 https://www.encodeproject.org/files/ENCFF342NSJ/@@download/ENCFF342NSJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF645BKQ bigWig fold change over control ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF447KVS, ENCFF648GJU, ENCFF823USR 1601638088 ENCODE Processing Pipeline f676d8232e18e1575bc6ca63dd00e619 https://www.encodeproject.org/files/ENCFF645BKQ/@@download/ENCFF645BKQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF887VVU bigWig signal p-value ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF447KVS, ENCFF648GJU, ENCFF823USR 1330264503 ENCODE Processing Pipeline 04473eebb30e7d69ee862db487a30a10 https://www.encodeproject.org/files/ENCFF887VVU/@@download/ENCFF887VVU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF643WDM bigWig fold change over control ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF342NSJ, ENCFF447KVS, ENCFF823USR 1774119950 ENCODE Processing Pipeline 5cbdcb72960bc846971dc94359821511 https://www.encodeproject.org/files/ENCFF643WDM/@@download/ENCFF643WDM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF884FBS bigWig signal p-value ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF342NSJ, ENCFF447KVS, ENCFF823USR 1603363258 ENCODE Processing Pipeline 222de2c010d37c14b2b5a95fb93194de https://www.encodeproject.org/files/ENCFF884FBS/@@download/ENCFF884FBS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF449WDO bigWig signal p-value ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF342NSJ, ENCFF447KVS, ENCFF648GJU, ENCFF823USR 1780213957 ENCODE Processing Pipeline aa114e203d9dfdf51e212d75a50c4036 https://www.encodeproject.org/files/ENCFF449WDO/@@download/ENCFF449WDO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF959GOJ bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF342NSJ, ENCFF447KVS, ENCFF823USR 7163278 ENCODE Processing Pipeline 537b25e0e2c55fd780856aec3b2305e0 https://www.encodeproject.org/files/ENCFF959GOJ/@@download/ENCFF959GOJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF686MKA bigWig fold change over control ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF342NSJ, ENCFF447KVS, ENCFF648GJU, ENCFF823USR 2170837841 ENCODE Processing Pipeline 49654c4047957086fe30b50dbfc6b81f https://www.encodeproject.org/files/ENCFF686MKA/@@download/ENCFF686MKA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF730RMP bigBed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF959GOJ 13358756 ENCODE Processing Pipeline 9678c7c052be5444ab6130ed99d12751 https://www.encodeproject.org/files/ENCFF730RMP/@@download/ENCFF730RMP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF720TLZ bigBed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF260SLH 13352285 ENCODE Processing Pipeline 196665b61c7f38bdbd45b1f14ccee41b https://www.encodeproject.org/files/ENCFF720TLZ/@@download/ENCFF720TLZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF931OYK bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF447KVS, ENCFF648GJU, ENCFF823USR 7038806 ENCODE Processing Pipeline 2e67d8c4c5a5447b6e7f56507d309e06 https://www.encodeproject.org/files/ENCFF931OYK/@@download/ENCFF931OYK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF260SLH bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF342NSJ, ENCFF447KVS, ENCFF648GJU, ENCFF823USR 7282363 ENCODE Processing Pipeline 48312ba15768c6d7ffd84d3d61b81412 https://www.encodeproject.org/files/ENCFF260SLH/@@download/ENCFF260SLH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF892ZNI bigBed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF931OYK 13445265 ENCODE Processing Pipeline f781d9e58134c19b1ed5a9f7f4c15910 https://www.encodeproject.org/files/ENCFF892ZNI/@@download/ENCFF892ZNI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF092MAF bed narrowPeak conservative idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF260SLH, ENCFF931OYK, ENCFF959GOJ 476791 ENCODE Processing Pipeline 16e6372cde13e83dabe878c13f32874a https://www.encodeproject.org/files/ENCFF092MAF/@@download/ENCFF092MAF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF313AUG bigBed narrowPeak optimal idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF567MGV 1136504 ENCODE Processing Pipeline 89a35c46f81d025457d10bb7e2db8a34 https://www.encodeproject.org/files/ENCFF313AUG/@@download/ENCFF313AUG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF453TIK bigBed narrowPeak conservative idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF092MAF 972458 ENCODE Processing Pipeline 284a6ec78fcf5a4ccd12728f7234b775 https://www.encodeproject.org/files/ENCFF453TIK/@@download/ENCFF453TIK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF567MGV bed narrowPeak optimal idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF260SLH, ENCFF931OYK, ENCFF959GOJ 582289 ENCODE Processing Pipeline cc41dcfc4a3489a23dc37698413157be https://www.encodeproject.org/files/ENCFF567MGV/@@download/ENCFF567MGV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF547SSU bigWig signal p-value ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF191XYH, ENCFF199VCV, ENCFF746SKT 1611277003 ENCODE Processing Pipeline 80cf76c1290f34ea50142a61411ef8c4 https://www.encodeproject.org/files/ENCFF547SSU/@@download/ENCFF547SSU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF725GEK bigWig signal p-value ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF759ASI 1481243197 ENCODE Processing Pipeline 8579acd8d0d9a6ba2d788f80e07b1671 https://www.encodeproject.org/files/ENCFF725GEK/@@download/ENCFF725GEK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF646ARK bigWig signal p-value ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF191XYH, ENCFF199VCV, ENCFF746SKT, ENCFF759ASI 1961133284 ENCODE Processing Pipeline 7cb3a503b83afe7d1ff30ea2b64a0729 https://www.encodeproject.org/files/ENCFF646ARK/@@download/ENCFF646ARK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF534VBN bigWig fold change over control ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF191XYH, ENCFF199VCV, ENCFF746SKT 1548923906 ENCODE Processing Pipeline 1265db3b5081c54e18ac5af4d051abcb https://www.encodeproject.org/files/ENCFF534VBN/@@download/ENCFF534VBN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF075KQI bigWig fold change over control ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF759ASI 1789260077 ENCODE Processing Pipeline e92253e11ce1a4da7bb2ae1c5aa49348 https://www.encodeproject.org/files/ENCFF075KQI/@@download/ENCFF075KQI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF385YHK bigWig fold change over control ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF191XYH, ENCFF199VCV, ENCFF746SKT, ENCFF759ASI 2176255117 ENCODE Processing Pipeline 95d596d37948c0c25e68bb2c081d0889 https://www.encodeproject.org/files/ENCFF385YHK/@@download/ENCFF385YHK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF313PSX bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF191XYH, ENCFF199VCV, ENCFF746SKT 6989057 ENCODE Processing Pipeline 191e83defac239995548a06820adfabb https://www.encodeproject.org/files/ENCFF313PSX/@@download/ENCFF313PSX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF421NMT bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF191XYH, ENCFF199VCV, ENCFF746SKT, ENCFF759ASI 7317125 ENCODE Processing Pipeline 72171399ec5cdb45ecc66d961dc8a8b1 https://www.encodeproject.org/files/ENCFF421NMT/@@download/ENCFF421NMT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF796MYM bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF759ASI 7164912 ENCODE Processing Pipeline 908e506316bdad5b80e15cf632cd9583 https://www.encodeproject.org/files/ENCFF796MYM/@@download/ENCFF796MYM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF724QAF bigBed narrowPeak conservative idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF058WUU 988456 ENCODE Processing Pipeline c8a16304b9008b993289c935956cbc75 https://www.encodeproject.org/files/ENCFF724QAF/@@download/ENCFF724QAF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF246ZMG bed narrowPeak optimal idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF313PSX, ENCFF419RSJ, ENCFF421NMT, ENCFF796MYM 578677 ENCODE Processing Pipeline 0157fc8c1fd7ab7bb4a61a7e317b26e7 https://www.encodeproject.org/files/ENCFF246ZMG/@@download/ENCFF246ZMG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF051KIP bigBed narrowPeak optimal idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF246ZMG 1125322 ENCODE Processing Pipeline e1955fb8b544d2f80a53a9851a677b23 https://www.encodeproject.org/files/ENCFF051KIP/@@download/ENCFF051KIP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF132XHT bigBed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF313PSX 13487381 ENCODE Processing Pipeline b1bac4f77363783804f6893052376a6f https://www.encodeproject.org/files/ENCFF132XHT/@@download/ENCFF132XHT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF976CDY bigBed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF796MYM 13420472 ENCODE Processing Pipeline 8fc0a21e735dec5a9916ed28ba75ea17 https://www.encodeproject.org/files/ENCFF976CDY/@@download/ENCFF976CDY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF094KNM bigBed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF421NMT 13396792 ENCODE Processing Pipeline 6af1208ff68e6c7e340eb23a502367f5 https://www.encodeproject.org/files/ENCFF094KNM/@@download/ENCFF094KNM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF058WUU bed narrowPeak conservative idr thresholded peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF313PSX, ENCFF419RSJ, ENCFF421NMT, ENCFF796MYM 491555 ENCODE Processing Pipeline 8eb2f41637e67ff7423ed2be2cf8ae0f https://www.encodeproject.org/files/ENCFF058WUU/@@download/ENCFF058WUU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF957KBX fastq reads ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF944XPT 2300124775 Richard Myers, HAIB 1503179f4ff08fddf209b1ec0e430194 SRA:SRR6213957 https://www.encodeproject.org/files/ENCFF957KBX/@@download/ENCFF957KBX.fastq.gz Illumina HiSeq 2000 /files/ENCFF245ALB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF944XPT fastq reads ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF957KBX 2409921751 Richard Myers, HAIB 43cae530c6e907ecfe47adc6b4552d26 SRA:SRR6213957 https://www.encodeproject.org/files/ENCFF944XPT/@@download/ENCFF944XPT.fastq.gz Illumina HiSeq 2000 /files/ENCFF498AHD/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF669TWJ bam unfiltered alignments ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF944XPT, ENCFF957KBX 3620638382 ENCODE Processing Pipeline d075a5e0fa1fbecc33e4a31f7b2e78d6 https://www.encodeproject.org/files/ENCFF669TWJ/@@download/ENCFF669TWJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF780ISS bam alignments ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF944XPT, ENCFF957KBX 2145749315 ENCODE Processing Pipeline b2e8d0eb73a38feba4e1db93eb882405 https://www.encodeproject.org/files/ENCFF780ISS/@@download/ENCFF780ISS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF876ISC bam unfiltered alignments ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF944XPT, ENCFF957KBX 3613055097 ENCODE Processing Pipeline 23153c8f80b6995fa7dd8096f422311d https://www.encodeproject.org/files/ENCFF876ISC/@@download/ENCFF876ISC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF276QQO bam alignments ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF944XPT, ENCFF957KBX 2149406038 ENCODE Processing Pipeline e374d93259bb71cd5e43af8476ac264f https://www.encodeproject.org/files/ENCFF276QQO/@@download/ENCFF276QQO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF257IFO bigWig signal p-value ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF780ISS 827137065 ENCODE Processing Pipeline cd6adbf151c0b254e98073cfa901a65e https://www.encodeproject.org/files/ENCFF257IFO/@@download/ENCFF257IFO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF941VKG bigWig fold change over control ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF780ISS 661598952 ENCODE Processing Pipeline 5331380c91fea10ce295e41880735689 https://www.encodeproject.org/files/ENCFF941VKG/@@download/ENCFF941VKG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF852XQI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF854NUO 13713 ENCODE Processing Pipeline 1fca11d0cd6de31023c4584ef660c1d8 https://www.encodeproject.org/files/ENCFF852XQI/@@download/ENCFF852XQI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF661EWJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF852XQI 64675 ENCODE Processing Pipeline 722cfb79f65b50e84d343fe4721b93d7 https://www.encodeproject.org/files/ENCFF661EWJ/@@download/ENCFF661EWJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF854NUO bed narrowPeak peaks ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF780ISS 5933733 ENCODE Processing Pipeline fa1c9f9d1b719d69f4b30900233991e9 https://www.encodeproject.org/files/ENCFF854NUO/@@download/ENCFF854NUO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF879XZJ bigBed narrowPeak peaks ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF854NUO 12931497 ENCODE Processing Pipeline 635bfaab03aac6cca22665d77b8b0e44 https://www.encodeproject.org/files/ENCFF879XZJ/@@download/ENCFF879XZJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF992GOW fastq reads ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF581BMZ 2455543862 Richard Myers, HAIB b48160bfff62806a796015865ec09f17 https://www.encodeproject.org/files/ENCFF992GOW/@@download/ENCFF992GOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF299YUY/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF581BMZ fastq reads ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF992GOW 2597552315 Richard Myers, HAIB 79dd3113a11c098afcb7862ca785d04b https://www.encodeproject.org/files/ENCFF581BMZ/@@download/ENCFF581BMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF452ZZF/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF534SHC bam unfiltered alignments ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF581BMZ, ENCFF807MUK, ENCFF992GOW 3688300712 ENCODE Processing Pipeline b1519eafbfc127d5d42e6b2f36009a3e https://www.encodeproject.org/files/ENCFF534SHC/@@download/ENCFF534SHC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF328BAK bam alignments ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF581BMZ, ENCFF807MUK, ENCFF992GOW 2519691176 ENCODE Processing Pipeline 3210f8d47ba69ce4d07f2d453b18946b https://www.encodeproject.org/files/ENCFF328BAK/@@download/ENCFF328BAK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF487PDL bam unfiltered alignments ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF581BMZ, ENCFF643CGH, ENCFF992GOW 3681168202 ENCODE Processing Pipeline e58838d773f1e868c406515bc4b597b2 https://www.encodeproject.org/files/ENCFF487PDL/@@download/ENCFF487PDL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF675VGN bam alignments ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF581BMZ, ENCFF643CGH, ENCFF992GOW 2521761814 ENCODE Processing Pipeline 0e9a3a7d3315586f574b40d4aa6eadde https://www.encodeproject.org/files/ENCFF675VGN/@@download/ENCFF675VGN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF158WLD bigWig signal p-value ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF675VGN, ENCFF700NLK 1482791709 ENCODE Processing Pipeline d21763a480921937b5ee8e26e50f1eba https://www.encodeproject.org/files/ENCFF158WLD/@@download/ENCFF158WLD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF738RTR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF900JGZ 1312567 ENCODE Processing Pipeline bba1a5aa67524e402744ecce855d7abf https://www.encodeproject.org/files/ENCFF738RTR/@@download/ENCFF738RTR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF365XYE bigBed narrowPeak peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF900JGZ 13258372 ENCODE Processing Pipeline ebc4cfc7b93ca54835f9f7259a48350c https://www.encodeproject.org/files/ENCFF365XYE/@@download/ENCFF365XYE.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF957FIH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF738RTR 2323031 ENCODE Processing Pipeline 0178368192344f941200810f38ebf1f7 https://www.encodeproject.org/files/ENCFF957FIH/@@download/ENCFF957FIH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF108IFR bigWig fold change over control ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF675VGN, ENCFF700NLK 1081708500 ENCODE Processing Pipeline 653062bc4ee73c4317bc488539498799 https://www.encodeproject.org/files/ENCFF108IFR/@@download/ENCFF108IFR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF900JGZ bed narrowPeak peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF675VGN, ENCFF700NLK 6745397 ENCODE Processing Pipeline 54e0de249cb8ffce218a01939fcc1990 https://www.encodeproject.org/files/ENCFF900JGZ/@@download/ENCFF900JGZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF645PDZ bigWig fold change over control ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF328BAK, ENCFF496DGC 1083062803 ENCODE Processing Pipeline d079475283f1b0e2f4e02196f7b6753e https://www.encodeproject.org/files/ENCFF645PDZ/@@download/ENCFF645PDZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF013MJH bigBed narrowPeak peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF875HGQ 12514431 ENCODE Processing Pipeline 83b18372fabdc8e40ca1fe727286c3a0 https://www.encodeproject.org/files/ENCFF013MJH/@@download/ENCFF013MJH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF598AIY bigWig signal p-value ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF328BAK, ENCFF496DGC 1479536316 ENCODE Processing Pipeline 120ea819c6528344f9e8e36e8bbe46b9 https://www.encodeproject.org/files/ENCFF598AIY/@@download/ENCFF598AIY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF230JOX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF594WWB 2286081 ENCODE Processing Pipeline a67d5bfdf8fabab10abeec9c5be1ee16 https://www.encodeproject.org/files/ENCFF230JOX/@@download/ENCFF230JOX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF875HGQ bed narrowPeak peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF328BAK, ENCFF496DGC 6194400 ENCODE Processing Pipeline 520bbfdcbe200f38899af61c199f8564 https://www.encodeproject.org/files/ENCFF875HGQ/@@download/ENCFF875HGQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF594WWB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF875HGQ 1288543 ENCODE Processing Pipeline c1d0e3bcf35d3cd3b42b4f52467fec17 https://www.encodeproject.org/files/ENCFF594WWB/@@download/ENCFF594WWB.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF280IXK fastq reads ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF278ZXI 2741252444 Michael Snyder, Stanford 12e0806b39040136ef189ab37954a6f3 SRA:SRR6213244 https://www.encodeproject.org/files/ENCFF280IXK/@@download/ENCFF280IXK.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF720YIW fastq reads ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF037HQZ 2531196728 Michael Snyder, Stanford bb1c7230546635224838e4e9a48a1eb7 SRA:SRR6213243 https://www.encodeproject.org/files/ENCFF720YIW/@@download/ENCFF720YIW.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF037HQZ fastq reads ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF720YIW 2201695149 Michael Snyder, Stanford 4ab5f652f9e9e5aaa44b970d69b72e75 SRA:SRR6213243 https://www.encodeproject.org/files/ENCFF037HQZ/@@download/ENCFF037HQZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF278ZXI fastq reads ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF280IXK 2338117283 Michael Snyder, Stanford 04aa555af78965eb21e083f6d0c90320 SRA:SRR6213244 https://www.encodeproject.org/files/ENCFF278ZXI/@@download/ENCFF278ZXI.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF595KXD bam unfiltered alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF278ZXI, ENCFF280IXK, ENCFF643CGH 4797702515 ENCODE Processing Pipeline 4a9ee0d820777c1540f6177ac60b4a94 https://www.encodeproject.org/files/ENCFF595KXD/@@download/ENCFF595KXD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF618PNT bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF037HQZ, ENCFF720YIW, ENCFF807MUK 3238217481 ENCODE Processing Pipeline 06f635d7e9be5f54c640183e68884145 https://www.encodeproject.org/files/ENCFF618PNT/@@download/ENCFF618PNT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF719HFA bam unfiltered alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF037HQZ, ENCFF720YIW, ENCFF807MUK 4461746902 ENCODE Processing Pipeline 8d7e503c0bfce70b5ba188399070bd05 https://www.encodeproject.org/files/ENCFF719HFA/@@download/ENCFF719HFA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF079WOP bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF278ZXI, ENCFF280IXK, ENCFF807MUK 3480616305 ENCODE Processing Pipeline ed9310f3c517025c571c7d49e0b206dd https://www.encodeproject.org/files/ENCFF079WOP/@@download/ENCFF079WOP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF618WHB bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF037HQZ, ENCFF643CGH, ENCFF720YIW 3237551452 ENCODE Processing Pipeline df4768984ccb430e5dc17313d942eb2c https://www.encodeproject.org/files/ENCFF618WHB/@@download/ENCFF618WHB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF065WCR bam unfiltered alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF037HQZ, ENCFF643CGH, ENCFF720YIW 4467006333 ENCODE Processing Pipeline 8f0fb93791ce1720455e362bd6fdcb2e https://www.encodeproject.org/files/ENCFF065WCR/@@download/ENCFF065WCR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF270MXM bam unfiltered alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF278ZXI, ENCFF280IXK, ENCFF807MUK 4788137074 ENCODE Processing Pipeline 3f504d414fc3bd1e1f475f4a6c8be43b https://www.encodeproject.org/files/ENCFF270MXM/@@download/ENCFF270MXM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF639VBS bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF278ZXI, ENCFF280IXK, ENCFF643CGH 3480478079 ENCODE Processing Pipeline ba073fb3b5aba0956744642f02ecb103 https://www.encodeproject.org/files/ENCFF639VBS/@@download/ENCFF639VBS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF754SNA bigWig fold change over control ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF079WOP, ENCFF447KVS, ENCFF823USR 1518016529 ENCODE Processing Pipeline 0122e108c63d17fab24d0b3942b58afa https://www.encodeproject.org/files/ENCFF754SNA/@@download/ENCFF754SNA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF372IMH bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF618PNT, ENCFF823USR 6616557 ENCODE Processing Pipeline d0198a60543d495af1b7e9646ee40e5a https://www.encodeproject.org/files/ENCFF372IMH/@@download/ENCFF372IMH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF400MGW bed narrowPeak conservative idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF020XZH, ENCFF239APD, ENCFF372IMH 180488 ENCODE Processing Pipeline 044d6e5ecb2a51ef1379ec560c91a08f https://www.encodeproject.org/files/ENCFF400MGW/@@download/ENCFF400MGW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF205XPG bigWig signal p-value ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF191XYH, ENCFF618WHB, ENCFF746SKT 1380771700 ENCODE Processing Pipeline dd783c048d82f52b27c9bc1fa8b5f5fc https://www.encodeproject.org/files/ENCFF205XPG/@@download/ENCFF205XPG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF285DMJ bigWig signal p-value ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF079WOP, ENCFF447KVS, ENCFF618PNT, ENCFF823USR 2072322765 ENCODE Processing Pipeline 542960d172ce471e490f65ec56aee8f6 https://www.encodeproject.org/files/ENCFF285DMJ/@@download/ENCFF285DMJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF300ZUK bigWig fold change over control ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF618PNT, ENCFF823USR 1447779243 ENCODE Processing Pipeline c8a3bd87ef0475c78cbac1805492ba74 https://www.encodeproject.org/files/ENCFF300ZUK/@@download/ENCFF300ZUK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF239APD bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF079WOP, ENCFF447KVS, ENCFF823USR 6566644 ENCODE Processing Pipeline ae33a2639073b893409a18c9490814f0 https://www.encodeproject.org/files/ENCFF239APD/@@download/ENCFF239APD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF961BQJ bed narrowPeak optimal idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF020XZH, ENCFF239APD, ENCFF372IMH 262129 ENCODE Processing Pipeline 4b9cc48324b14cbed91146b560fc8b98 https://www.encodeproject.org/files/ENCFF961BQJ/@@download/ENCFF961BQJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF182CLS bigWig fold change over control ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF079WOP, ENCFF447KVS, ENCFF618PNT, ENCFF823USR 2051316031 ENCODE Processing Pipeline f0db5ee83ea13df777ee437c76b57d14 https://www.encodeproject.org/files/ENCFF182CLS/@@download/ENCFF182CLS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF020XZH bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF079WOP, ENCFF447KVS, ENCFF618PNT, ENCFF823USR 7162957 ENCODE Processing Pipeline 93d7d19cfc703234eabca10e528d47e2 https://www.encodeproject.org/files/ENCFF020XZH/@@download/ENCFF020XZH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF341KLS bigWig signal p-value ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF639VBS, ENCFF746SKT 1468259475 ENCODE Processing Pipeline c13f815f43a17b35ab350d2f5be4b307 https://www.encodeproject.org/files/ENCFF341KLS/@@download/ENCFF341KLS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF332GVH bigWig fold change over control ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF639VBS, ENCFF746SKT 1522158044 ENCODE Processing Pipeline dee04315bb481556b6fd07e994b2e614 https://www.encodeproject.org/files/ENCFF332GVH/@@download/ENCFF332GVH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF897PRY bigWig signal p-value ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF618PNT, ENCFF823USR 1523182224 ENCODE Processing Pipeline 1414625f29405a33f677f08c6fc79e88 https://www.encodeproject.org/files/ENCFF897PRY/@@download/ENCFF897PRY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF544JFP bigBed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF239APD 11397497 ENCODE Processing Pipeline 6add79dc0aa64cd14e1e12509e287ede https://www.encodeproject.org/files/ENCFF544JFP/@@download/ENCFF544JFP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF710ZHA bigBed narrowPeak optimal idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF961BQJ 501814 ENCODE Processing Pipeline c8b5afc555584505ff639cb079a39bc9 https://www.encodeproject.org/files/ENCFF710ZHA/@@download/ENCFF710ZHA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF792HBZ bigWig signal p-value ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF079WOP, ENCFF447KVS, ENCFF823USR 1504336571 ENCODE Processing Pipeline ee28edf0c6835c397df2e6dced0caf45 https://www.encodeproject.org/files/ENCFF792HBZ/@@download/ENCFF792HBZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF853TEU bigBed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF372IMH 11458554 ENCODE Processing Pipeline 7a349e00b593aee6688acbb7aefbaaaa https://www.encodeproject.org/files/ENCFF853TEU/@@download/ENCFF853TEU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF190CWO bigBed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF020XZH 13421801 ENCODE Processing Pipeline 37fd6d5af0551f84a8f8bfb88a9a7d84 https://www.encodeproject.org/files/ENCFF190CWO/@@download/ENCFF190CWO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF114WVP bigBed narrowPeak conservative idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF400MGW 380849 ENCODE Processing Pipeline 9d6b8f773eb206b276542ee4af75db2d https://www.encodeproject.org/files/ENCFF114WVP/@@download/ENCFF114WVP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF051BSW bigWig signal p-value ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF191XYH, ENCFF618WHB, ENCFF639VBS, ENCFF746SKT 1667860767 ENCODE Processing Pipeline e08c86b1b227db7436ed4ad3c6a95ab2 https://www.encodeproject.org/files/ENCFF051BSW/@@download/ENCFF051BSW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF966TFY bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF639VBS, ENCFF746SKT 6565858 ENCODE Processing Pipeline 46997e44d213feb2adad40a37b4f7fc6 https://www.encodeproject.org/files/ENCFF966TFY/@@download/ENCFF966TFY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF561FQU bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF191XYH, ENCFF618WHB, ENCFF639VBS, ENCFF746SKT 7166071 ENCODE Processing Pipeline e8205dd5e88412c886fd26ebdecb6a03 https://www.encodeproject.org/files/ENCFF561FQU/@@download/ENCFF561FQU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF896JRD bigBed narrowPeak conservative idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF908YUA 385874 ENCODE Processing Pipeline f2beba3904bb216897fa95b2a7bafcf8 https://www.encodeproject.org/files/ENCFF896JRD/@@download/ENCFF896JRD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF067FRC bigWig fold change over control ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF191XYH, ENCFF618WHB, ENCFF639VBS, ENCFF746SKT 2063699832 ENCODE Processing Pipeline 1b6b0cbcd5b0ed796b88bf6616548543 https://www.encodeproject.org/files/ENCFF067FRC/@@download/ENCFF067FRC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF908YUA bed narrowPeak conservative idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF561FQU, ENCFF564DUB, ENCFF966TFY 182090 ENCODE Processing Pipeline c63ebe901267b97141320ec5b16ce5de https://www.encodeproject.org/files/ENCFF908YUA/@@download/ENCFF908YUA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF954FZC bigBed narrowPeak optimal idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF619BFO 500163 ENCODE Processing Pipeline a4e620e55a201373ea6aa3b69a105336 https://www.encodeproject.org/files/ENCFF954FZC/@@download/ENCFF954FZC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF564DUB bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF191XYH, ENCFF618WHB, ENCFF746SKT 6618924 ENCODE Processing Pipeline 1770fb5fa3db0ad8516afb8444262bc0 https://www.encodeproject.org/files/ENCFF564DUB/@@download/ENCFF564DUB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF619BFO bed narrowPeak optimal idr thresholded peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF561FQU, ENCFF564DUB, ENCFF966TFY 259244 ENCODE Processing Pipeline f05462501df7b490a7893cc190ddb146 https://www.encodeproject.org/files/ENCFF619BFO/@@download/ENCFF619BFO.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF278QYX bigWig fold change over control ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF191XYH, ENCFF618WHB, ENCFF746SKT 1445251121 ENCODE Processing Pipeline a1f0f19f8b9d2a8bd16be118257785eb https://www.encodeproject.org/files/ENCFF278QYX/@@download/ENCFF278QYX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF514RUN bigBed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF966TFY 11417874 ENCODE Processing Pipeline 0362a309b7582ef3b9c1f93d696519a1 https://www.encodeproject.org/files/ENCFF514RUN/@@download/ENCFF514RUN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF214OVE bigBed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF561FQU 13442280 ENCODE Processing Pipeline 6e0b7ee8a778875146048e3b332e240a https://www.encodeproject.org/files/ENCFF214OVE/@@download/ENCFF214OVE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF156WSW bigBed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF564DUB 11482085 ENCODE Processing Pipeline de21bd0a95383daab10b2ae34c8368fc https://www.encodeproject.org/files/ENCFF156WSW/@@download/ENCFF156WSW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF360PQN fastq reads ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF480FWI 1244958508 Richard Myers, HAIB 00304a035bb9de6db1b4af4c602fd9f0 https://www.encodeproject.org/files/ENCFF360PQN/@@download/ENCFF360PQN.fastq.gz Illumina HiSeq 2000 /files/ENCFF829TXJ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF480FWI fastq reads ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF360PQN 1320099103 Richard Myers, HAIB 6897c9f81a782ae87e283a928ce3a940 https://www.encodeproject.org/files/ENCFF480FWI/@@download/ENCFF480FWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF366SRC/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF138ZUP bam unfiltered alignments ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF360PQN, ENCFF480FWI, ENCFF643CGH 1982751481 ENCODE Processing Pipeline c293cce51aedd54c54042f0820a56663 https://www.encodeproject.org/files/ENCFF138ZUP/@@download/ENCFF138ZUP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF509TKU bam unfiltered alignments ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF360PQN, ENCFF480FWI, ENCFF807MUK 1983550138 ENCODE Processing Pipeline f0f78ce0ed80863843d8984b816848ed https://www.encodeproject.org/files/ENCFF509TKU/@@download/ENCFF509TKU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF798LQE bam alignments ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF360PQN, ENCFF480FWI, ENCFF807MUK 817755160 ENCODE Processing Pipeline f72096139b30f160a44d8c5373e0a977 https://www.encodeproject.org/files/ENCFF798LQE/@@download/ENCFF798LQE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF246PZZ bam alignments ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF360PQN, ENCFF480FWI, ENCFF643CGH 817653362 ENCODE Processing Pipeline 4dcf1a27a91c76281f0d3cf80454f492 https://www.encodeproject.org/files/ENCFF246PZZ/@@download/ENCFF246PZZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF341DIQ bed narrowPeak peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF246PZZ, ENCFF845FAE 5753094 ENCODE Processing Pipeline 240aaec7b27d43a9efe147b600eb71c5 https://www.encodeproject.org/files/ENCFF341DIQ/@@download/ENCFF341DIQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF925AHZ bigWig signal p-value ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF246PZZ, ENCFF845FAE 758212823 ENCODE Processing Pipeline 867bb705902ea9e8fd316cdc61f36690 https://www.encodeproject.org/files/ENCFF925AHZ/@@download/ENCFF925AHZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF216SHO bigWig fold change over control ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF798LQE, ENCFF938LSW 275050821 ENCODE Processing Pipeline 64245b99d27e6e29bdc4c671f6a88d02 https://www.encodeproject.org/files/ENCFF216SHO/@@download/ENCFF216SHO.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF746HRF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF669ZUC 2276392 ENCODE Processing Pipeline 47cf23877c7622ef87a664400438ffdc https://www.encodeproject.org/files/ENCFF746HRF/@@download/ENCFF746HRF.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF899PIK bigBed narrowPeak peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF341DIQ 11393517 ENCODE Processing Pipeline c428efc500b18a023704abe8beacede6 https://www.encodeproject.org/files/ENCFF899PIK/@@download/ENCFF899PIK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF948LKS bigWig fold change over control ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF246PZZ, ENCFF845FAE 273882526 ENCODE Processing Pipeline 04fa0b04f32c22c26f2cd6564311e5df https://www.encodeproject.org/files/ENCFF948LKS/@@download/ENCFF948LKS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF039JXQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF341DIQ, ENCFF419RSJ 1345491 ENCODE Processing Pipeline 4e56f01cd7f884ca316bf3b10d71e38c https://www.encodeproject.org/files/ENCFF039JXQ/@@download/ENCFF039JXQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF834DYY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF039JXQ 2306016 ENCODE Processing Pipeline 9f7d4d42f174b2e143f5102cefd30a1f https://www.encodeproject.org/files/ENCFF834DYY/@@download/ENCFF834DYY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF926NLY bigWig signal p-value ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF798LQE, ENCFF938LSW 757709204 ENCODE Processing Pipeline 669574909e7dec17f8a599f1ff6e9ce3 https://www.encodeproject.org/files/ENCFF926NLY/@@download/ENCFF926NLY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF432CDE bigBed narrowPeak peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF433LTF 10737899 ENCODE Processing Pipeline 9a6632d6cc78e19f02870f3e22800eb5 https://www.encodeproject.org/files/ENCFF432CDE/@@download/ENCFF432CDE.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF433LTF bed narrowPeak peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF798LQE, ENCFF938LSW 5395544 ENCODE Processing Pipeline b834ba2e51cd730a1b84fb4583a96895 https://www.encodeproject.org/files/ENCFF433LTF/@@download/ENCFF433LTF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF669ZUC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF433LTF 1330397 ENCODE Processing Pipeline c3d57dc09397285c2a2e21e72408eb3e https://www.encodeproject.org/files/ENCFF669ZUC/@@download/ENCFF669ZUC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF039TRC bam unfiltered alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 100 ENCFF310DAJ, ENCFF493LNW, ENCFF807MUK 6889152586 ENCODE Processing Pipeline 6ea9f5ac1978b9b83f0f1f82b420f498 https://www.encodeproject.org/files/ENCFF039TRC/@@download/ENCFF039TRC.bam hg19 released mild to moderate bottlenecking ENCFF406EZR bam unfiltered alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 100 ENCFF138KRI, ENCFF411JNO, ENCFF807MUK 5666892343 ENCODE Processing Pipeline 8a37c5d14569a45789b586740226a38f https://www.encodeproject.org/files/ENCFF406EZR/@@download/ENCFF406EZR.bam hg19 released mild to moderate bottlenecking ENCFF493LNW fastq reads ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF310DAJ 3238680932 Michael Snyder, Stanford 937a2ff98eb1776070ec69779b0a3bb2 SRA:SRR6213235 https://www.encodeproject.org/files/ENCFF493LNW/@@download/ENCFF493LNW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF411JNO fastq reads ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 1 100 paired-ended 1 ENCFF138KRI 2669451483 Michael Snyder, Stanford 49836338f712a05915c1d0c94fd513e5 SRA:SRR6213234 https://www.encodeproject.org/files/ENCFF411JNO/@@download/ENCFF411JNO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF310DAJ fastq reads ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF493LNW 3278510218 Michael Snyder, Stanford 01cfa70daacf17dcf3a9e64e79cb2897 SRA:SRR6213235 https://www.encodeproject.org/files/ENCFF310DAJ/@@download/ENCFF310DAJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF138KRI fastq reads ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 1 100 paired-ended 2 ENCFF411JNO 2681733281 Michael Snyder, Stanford b71fd209033269a61892aba9f34498a0 SRA:SRR6213234 https://www.encodeproject.org/files/ENCFF138KRI/@@download/ENCFF138KRI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF464SZU bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 100 ENCFF138KRI, ENCFF411JNO, ENCFF807MUK 4679520197 ENCODE Processing Pipeline 9378e5423e4fd923be35d69cd1ba7423 https://www.encodeproject.org/files/ENCFF464SZU/@@download/ENCFF464SZU.bam hg19 released mild to moderate bottlenecking ENCFF010OCL bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 100 ENCFF310DAJ, ENCFF493LNW, ENCFF807MUK 5634850788 ENCODE Processing Pipeline 49406b43b63b5535e194b52450912ec4 https://www.encodeproject.org/files/ENCFF010OCL/@@download/ENCFF010OCL.bam hg19 released mild to moderate bottlenecking ENCFF705JLG bigWig signal p-value ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF010OCL, ENCFF051LWI 1161078449 ENCODE Processing Pipeline bb9889bf0e9a44eb6c078596db6ca188 https://www.encodeproject.org/files/ENCFF705JLG/@@download/ENCFF705JLG.bigWig hg19 released mild to moderate bottlenecking ENCFF052VUA bigWig signal p-value ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF464SZU, ENCFF581ZJL 1097857671 ENCODE Processing Pipeline 3c4cd65f727451a282553724addb9425 https://www.encodeproject.org/files/ENCFF052VUA/@@download/ENCFF052VUA.bigWig hg19 released mild to moderate bottlenecking ENCFF933GER bigWig signal p-value ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF010OCL, ENCFF051LWI, ENCFF464SZU, ENCFF581ZJL 2234142261 ENCODE Processing Pipeline 8285d61704ef59676c8b411ea0147b5e https://www.encodeproject.org/files/ENCFF933GER/@@download/ENCFF933GER.bigWig hg19 released mild to moderate bottlenecking ENCFF895JXE bigWig fold change over control ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF010OCL, ENCFF051LWI 1388832503 ENCODE Processing Pipeline 1ebd616bd444c1a56e10e7e753e6d36a https://www.encodeproject.org/files/ENCFF895JXE/@@download/ENCFF895JXE.bigWig hg19 released mild to moderate bottlenecking ENCFF770SFT bigWig fold change over control ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF010OCL, ENCFF051LWI, ENCFF464SZU, ENCFF581ZJL 2323707230 ENCODE Processing Pipeline 6d51750f5db17d063d6e84ee6f58bb3e https://www.encodeproject.org/files/ENCFF770SFT/@@download/ENCFF770SFT.bigWig hg19 released mild to moderate bottlenecking ENCFF607ZKX bigWig fold change over control ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF464SZU, ENCFF581ZJL 1301800566 ENCODE Processing Pipeline 1636066738cb80e6eb4d6c6a6ad18ab7 https://www.encodeproject.org/files/ENCFF607ZKX/@@download/ENCFF607ZKX.bigWig hg19 released mild to moderate bottlenecking ENCFF824GQY bam unfiltered alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 100 ENCFF138KRI, ENCFF411JNO, ENCFF643CGH 5669185083 ENCODE Processing Pipeline 12af20b40b2df5cddb9e92a2be0c81be https://www.encodeproject.org/files/ENCFF824GQY/@@download/ENCFF824GQY.bam GRCh38 released mild to moderate bottlenecking ENCFF606QOR bam unfiltered alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 100 ENCFF310DAJ, ENCFF493LNW, ENCFF643CGH 6893760465 ENCODE Processing Pipeline 2179affd1924e2968b1069d6a9684acc https://www.encodeproject.org/files/ENCFF606QOR/@@download/ENCFF606QOR.bam GRCh38 released mild to moderate bottlenecking ENCFF995IZW bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 100 ENCFF138KRI, ENCFF411JNO, ENCFF643CGH 4679392187 ENCODE Processing Pipeline 276486fdf1ccda30966e13fcf530d12e https://www.encodeproject.org/files/ENCFF995IZW/@@download/ENCFF995IZW.bam GRCh38 released mild to moderate bottlenecking ENCFF141XAC bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 100 ENCFF310DAJ, ENCFF493LNW, ENCFF643CGH 5637061521 ENCODE Processing Pipeline f3c2bf0a50e6e63c7dfbf9f27f5ec9f5 https://www.encodeproject.org/files/ENCFF141XAC/@@download/ENCFF141XAC.bam GRCh38 released mild to moderate bottlenecking ENCFF901WTJ bigWig signal p-value ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF141XAC, ENCFF227IZS 1074028453 ENCODE Processing Pipeline 6e0c72fe357adff05ecf03659ff1823d https://www.encodeproject.org/files/ENCFF901WTJ/@@download/ENCFF901WTJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF598UAJ bigWig signal p-value ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF910IKB, ENCFF995IZW 1239907873 ENCODE Processing Pipeline 755e059d272d7363237c3360da9401e7 https://www.encodeproject.org/files/ENCFF598UAJ/@@download/ENCFF598UAJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF722OGK bigWig signal p-value ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF141XAC, ENCFF227IZS, ENCFF910IKB, ENCFF995IZW 1920663956 ENCODE Processing Pipeline 4c89bd0ab00e2fdf1b4a16ca89b0e14f https://www.encodeproject.org/files/ENCFF722OGK/@@download/ENCFF722OGK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF814EFC bigWig fold change over control ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF141XAC, ENCFF227IZS 1389809490 ENCODE Processing Pipeline 707a88d6c466d3d060e488ab3bec7631 https://www.encodeproject.org/files/ENCFF814EFC/@@download/ENCFF814EFC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF577EWC bigWig fold change over control ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF910IKB, ENCFF995IZW 1304411371 ENCODE Processing Pipeline 1102a19b539665060b09570fa614f641 https://www.encodeproject.org/files/ENCFF577EWC/@@download/ENCFF577EWC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF759CXX bigWig fold change over control ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF141XAC, ENCFF227IZS, ENCFF910IKB, ENCFF995IZW 2315969462 ENCODE Processing Pipeline 571ba67345897983f7dceafd2c12f3ca https://www.encodeproject.org/files/ENCFF759CXX/@@download/ENCFF759CXX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF903APS bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF141XAC, ENCFF227IZS 7084067 ENCODE Processing Pipeline d242b8e6b752dfb2913cbdc126582d88 https://www.encodeproject.org/files/ENCFF903APS/@@download/ENCFF903APS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF056QMP bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF141XAC, ENCFF227IZS, ENCFF910IKB, ENCFF995IZW 7278803 ENCODE Processing Pipeline c3384dc77287d72ba20afc6e7eef0c9f https://www.encodeproject.org/files/ENCFF056QMP/@@download/ENCFF056QMP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF415LHA bigBed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF903APS 13063888 ENCODE Processing Pipeline 7933f9b485d5da73e90e0bcf695ea87f https://www.encodeproject.org/files/ENCFF415LHA/@@download/ENCFF415LHA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF795YNH bigBed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF056QMP 13038590 ENCODE Processing Pipeline 9776cee18becd657d1e4fd8f93303c6a https://www.encodeproject.org/files/ENCFF795YNH/@@download/ENCFF795YNH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF100VPO bed narrowPeak conservative idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF056QMP, ENCFF419RSJ, ENCFF747YGC, ENCFF903APS 324607 ENCODE Processing Pipeline 2f43c69ee85a6f1be5dbd33fdeac015a https://www.encodeproject.org/files/ENCFF100VPO/@@download/ENCFF100VPO.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF747YGC bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF910IKB, ENCFF995IZW 6550309 ENCODE Processing Pipeline 0726aed103c8434a8e9515dfd5cb57b7 https://www.encodeproject.org/files/ENCFF747YGC/@@download/ENCFF747YGC.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF814EDS bigBed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF747YGC 13406640 ENCODE Processing Pipeline 0016113fd112022dfe572f438ebd852c https://www.encodeproject.org/files/ENCFF814EDS/@@download/ENCFF814EDS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF913UBP bigBed narrowPeak conservative idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF100VPO 650088 ENCODE Processing Pipeline b203efd90986165d95448e2e724ee949 https://www.encodeproject.org/files/ENCFF913UBP/@@download/ENCFF913UBP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF254QDM bed narrowPeak optimal idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF056QMP, ENCFF419RSJ, ENCFF747YGC, ENCFF903APS 439315 ENCODE Processing Pipeline 47ce323da31ee8c3a14657ee0a2df60b https://www.encodeproject.org/files/ENCFF254QDM/@@download/ENCFF254QDM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF191NPR bigBed narrowPeak optimal idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF254QDM 835689 ENCODE Processing Pipeline 24d81f45d0a70ca91aaf2beab85a8e85 https://www.encodeproject.org/files/ENCFF191NPR/@@download/ENCFF191NPR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF476KBA bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF464SZU, ENCFF581ZJL 6555255 ENCODE Processing Pipeline 701e52355b8054f5691ffa5db71126dc https://www.encodeproject.org/files/ENCFF476KBA/@@download/ENCFF476KBA.bed.gz hg19 released mild to moderate bottlenecking ENCFF487LPL bigBed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 ENCFF476KBA 13397202 ENCODE Processing Pipeline 6e4b380121badaa27cade62a892c760a https://www.encodeproject.org/files/ENCFF487LPL/@@download/ENCFF487LPL.bigBed hg19 released mild to moderate bottlenecking ENCFF411KLS bigBed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF264IPL 13044348 ENCODE Processing Pipeline bc580b0a6f4dc3bc89ef98dac9f7e1d4 https://www.encodeproject.org/files/ENCFF411KLS/@@download/ENCFF411KLS.bigBed hg19 released mild to moderate bottlenecking ENCFF501IBL bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF010OCL, ENCFF051LWI 7042297 ENCODE Processing Pipeline 36a535e24307ab7e0d632800d161ebbd https://www.encodeproject.org/files/ENCFF501IBL/@@download/ENCFF501IBL.bed.gz hg19 released mild to moderate bottlenecking ENCFF264IPL bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF010OCL, ENCFF051LWI, ENCFF464SZU, ENCFF581ZJL 7296916 ENCODE Processing Pipeline 8f5a77b268dd5216f4a26bf3b158fa22 https://www.encodeproject.org/files/ENCFF264IPL/@@download/ENCFF264IPL.bed.gz hg19 released mild to moderate bottlenecking ENCFF578RYW bigBed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF501IBL 13006335 ENCODE Processing Pipeline 37aa998d9a571e9329063c88cd62e38c https://www.encodeproject.org/files/ENCFF578RYW/@@download/ENCFF578RYW.bigBed hg19 released mild to moderate bottlenecking ENCFF481WGW bed narrowPeak optimal idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF001TDO, ENCFF264IPL, ENCFF476KBA, ENCFF501IBL 449348 ENCODE Processing Pipeline 9d5b80adbb13a11fc2daf31c2c04992c https://www.encodeproject.org/files/ENCFF481WGW/@@download/ENCFF481WGW.bed.gz hg19 released mild to moderate bottlenecking ENCFF614BOW bigBed narrowPeak optimal idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF481WGW 1015692 ENCODE Processing Pipeline 796f398a7848ba3b765d5b419cca77ff https://www.encodeproject.org/files/ENCFF614BOW/@@download/ENCFF614BOW.bigBed hg19 released mild to moderate bottlenecking ENCFF048GFY bed narrowPeak conservative idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF001TDO, ENCFF264IPL, ENCFF476KBA, ENCFF501IBL 329669 ENCODE Processing Pipeline b83290779e85ccd760121acbb5c22fbb https://www.encodeproject.org/files/ENCFF048GFY/@@download/ENCFF048GFY.bed.gz hg19 released mild to moderate bottlenecking ENCFF760FQS bigBed narrowPeak conservative idr thresholded peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2, 3 ENCFF048GFY 780599 ENCODE Processing Pipeline 111a18ff7005828549e89c77725b9f54 https://www.encodeproject.org/files/ENCFF760FQS/@@download/ENCFF760FQS.bigBed hg19 released mild to moderate bottlenecking ENCFF703VJZ fastq reads ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1533980297 Richard Myers, HAIB 0a344be8607434655c97039db1bc82ae SRA:SRR5338903 https://www.encodeproject.org/files/ENCFF703VJZ/@@download/ENCFF703VJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF974TAR fastq reads ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1739179056 Richard Myers, HAIB 57480f804badeb78daaa7f143ed763a5 SRA:SRR5338902 https://www.encodeproject.org/files/ENCFF974TAR/@@download/ENCFF974TAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF452YXR bam unfiltered alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF703VJZ 1650303325 ENCODE Processing Pipeline e8e78908232af68c25bea869f3e9a101 https://www.encodeproject.org/files/ENCFF452YXR/@@download/ENCFF452YXR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF990TVD bam unfiltered alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF974TAR 1841348293 ENCODE Processing Pipeline c256c701f27455138e78ad6d906aea74 https://www.encodeproject.org/files/ENCFF990TVD/@@download/ENCFF990TVD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308LVZ bam unfiltered alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF974TAR 1844946113 ENCODE Processing Pipeline 1cc9bd2dbc4afb46bc243ab1184f3196 https://www.encodeproject.org/files/ENCFF308LVZ/@@download/ENCFF308LVZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF789JAG bam unfiltered alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF703VJZ, ENCFF807MUK 1647376005 ENCODE Processing Pipeline f7cc590e79aa55054c311203ed6ec531 https://www.encodeproject.org/files/ENCFF789JAG/@@download/ENCFF789JAG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF211PNG bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF703VJZ 1310429502 ENCODE Processing Pipeline df3f74e177b547ef1f5af82d20f5ee3f https://www.encodeproject.org/files/ENCFF211PNG/@@download/ENCFF211PNG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF869KFS bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF974TAR 1432560498 ENCODE Processing Pipeline b251cff34bbc740a0e8287f6313e22d1 https://www.encodeproject.org/files/ENCFF869KFS/@@download/ENCFF869KFS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF727JMT bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF703VJZ, ENCFF807MUK 1309970801 ENCODE Processing Pipeline 826d2393f709066ce2e43444052db5b4 https://www.encodeproject.org/files/ENCFF727JMT/@@download/ENCFF727JMT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF414LDK bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF974TAR 1431942198 ENCODE Processing Pipeline 2e063e2719a44469d50e75f09c777e7e https://www.encodeproject.org/files/ENCFF414LDK/@@download/ENCFF414LDK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF485LAX bigWig signal p-value ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF211PNG 528834403 ENCODE Processing Pipeline 91dcbc3459981c30aea228dc5cb127c6 https://www.encodeproject.org/files/ENCFF485LAX/@@download/ENCFF485LAX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF457NLY bigWig signal p-value ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF211PNG, ENCFF869KFS 652196012 ENCODE Processing Pipeline cbee79e5eb4b9edcdc53bf698e1b8b5c https://www.encodeproject.org/files/ENCFF457NLY/@@download/ENCFF457NLY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF054SEQ bigWig signal p-value ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF869KFS 494704052 ENCODE Processing Pipeline 6e489179648bc4eb83acb17a9b006248 https://www.encodeproject.org/files/ENCFF054SEQ/@@download/ENCFF054SEQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF760DGU bigWig fold change over control ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF211PNG 505210440 ENCODE Processing Pipeline 1e0aeb0e81939a4cbb76e1f93b43979d https://www.encodeproject.org/files/ENCFF760DGU/@@download/ENCFF760DGU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF913DCK bigWig fold change over control ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF869KFS 540105023 ENCODE Processing Pipeline a9610fb99d4f52ee3071d6d68ab75889 https://www.encodeproject.org/files/ENCFF913DCK/@@download/ENCFF913DCK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF479OGO bigWig fold change over control ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF211PNG, ENCFF869KFS 848316973 ENCODE Processing Pipeline 6c1b5fb68fc536862e0020e88c9756d1 https://www.encodeproject.org/files/ENCFF479OGO/@@download/ENCFF479OGO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF391ONP bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF869KFS 6019380 ENCODE Processing Pipeline 17cad7a8b9eef1a3de96b4a54ba0c4e7 https://www.encodeproject.org/files/ENCFF391ONP/@@download/ENCFF391ONP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF130VUU bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF211PNG 5981979 ENCODE Processing Pipeline 2ce428e2cb8fbe2fc20ff95922db551e https://www.encodeproject.org/files/ENCFF130VUU/@@download/ENCFF130VUU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF987AVT bigBed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF130VUU 13028862 ENCODE Processing Pipeline 083dda9f70231d73fbaee15595787385 https://www.encodeproject.org/files/ENCFF987AVT/@@download/ENCFF987AVT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF622SUG bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF211PNG, ENCFF869KFS 6652216 ENCODE Processing Pipeline 6b9a5e291c43575e00d24a578392a558 https://www.encodeproject.org/files/ENCFF622SUG/@@download/ENCFF622SUG.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF632PYF bigBed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF391ONP 13077008 ENCODE Processing Pipeline d17bbd7202c8cc0a39b8d6b2c5b7be7a https://www.encodeproject.org/files/ENCFF632PYF/@@download/ENCFF632PYF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF950QXN bigBed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF622SUG 13044183 ENCODE Processing Pipeline f5a4c8f12a07ee10645e366c115a7d68 https://www.encodeproject.org/files/ENCFF950QXN/@@download/ENCFF950QXN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF608VWO bigBed narrowPeak conservative idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF790ENL 1110401 ENCODE Processing Pipeline ea9a1daaabafb0917f83ea526d119122 https://www.encodeproject.org/files/ENCFF608VWO/@@download/ENCFF608VWO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF790ENL bed narrowPeak conservative idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF130VUU, ENCFF391ONP, ENCFF419RSJ, ENCFF622SUG 553838 ENCODE Processing Pipeline 2ce53c91568065b2477b11c3bc590a1c https://www.encodeproject.org/files/ENCFF790ENL/@@download/ENCFF790ENL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF460HAG bed narrowPeak optimal idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF130VUU, ENCFF391ONP, ENCFF419RSJ, ENCFF622SUG 589255 ENCODE Processing Pipeline 72f69888525fa2233e4687627fd15be9 https://www.encodeproject.org/files/ENCFF460HAG/@@download/ENCFF460HAG.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF817OFY bigBed narrowPeak optimal idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF460HAG 1163788 ENCODE Processing Pipeline 046860758810835d8805c85570a25bcc https://www.encodeproject.org/files/ENCFF817OFY/@@download/ENCFF817OFY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF368GCM bigWig signal p-value ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF727JMT 1340752435 ENCODE Processing Pipeline 6c48caa7853e0012992eff894e79b124 https://www.encodeproject.org/files/ENCFF368GCM/@@download/ENCFF368GCM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF161YZP bigWig signal p-value ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF414LDK 1379658705 ENCODE Processing Pipeline 922810e974d43602bbc74fed8a8da063 https://www.encodeproject.org/files/ENCFF161YZP/@@download/ENCFF161YZP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF533HJI bigWig signal p-value ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF414LDK, ENCFF727JMT 1540620587 ENCODE Processing Pipeline 4c1ef9c20588947c8e7d8df48c85b7a8 https://www.encodeproject.org/files/ENCFF533HJI/@@download/ENCFF533HJI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF742XPP bigWig fold change over control ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF727JMT 955676030 ENCODE Processing Pipeline 295148f7bf09719958164cf7b4df2209 https://www.encodeproject.org/files/ENCFF742XPP/@@download/ENCFF742XPP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF286TME bigWig fold change over control ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF414LDK 1010996794 ENCODE Processing Pipeline 74cd81a63447e6d422c5ba7057825cb3 https://www.encodeproject.org/files/ENCFF286TME/@@download/ENCFF286TME.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF602IQI bigWig fold change over control ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF414LDK, ENCFF727JMT 1470291879 ENCODE Processing Pipeline 14df106ce871d09723b2976cbb16b712 https://www.encodeproject.org/files/ENCFF602IQI/@@download/ENCFF602IQI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF855GZK bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF727JMT 6644733 ENCODE Processing Pipeline a3b80b34086a6f1e8b98442731258cfb https://www.encodeproject.org/files/ENCFF855GZK/@@download/ENCFF855GZK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF135ZRF bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF414LDK 6549088 ENCODE Processing Pipeline f665fb69be027834e35ecbb6fe699834 https://www.encodeproject.org/files/ENCFF135ZRF/@@download/ENCFF135ZRF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF618EJI bigBed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF855GZK 13061984 ENCODE Processing Pipeline f6bf7e2902f0f163c17e69b00d51e186 https://www.encodeproject.org/files/ENCFF618EJI/@@download/ENCFF618EJI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF293CHO bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF414LDK, ENCFF727JMT 6943324 ENCODE Processing Pipeline 2fe3b1bad722d0d413e5cfa4fa451f61 https://www.encodeproject.org/files/ENCFF293CHO/@@download/ENCFF293CHO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF669FCP bigBed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF135ZRF 13085970 ENCODE Processing Pipeline 4b94b85b53e8fe589bec3d6981b2e5ee https://www.encodeproject.org/files/ENCFF669FCP/@@download/ENCFF669FCP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF396WIJ bigBed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF293CHO 13065536 ENCODE Processing Pipeline dc0c53d9b748cde9a3612c5d722d64ed https://www.encodeproject.org/files/ENCFF396WIJ/@@download/ENCFF396WIJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF909FST bed narrowPeak conservative idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF135ZRF, ENCFF293CHO, ENCFF855GZK 558161 ENCODE Processing Pipeline 41f87f3e16f42ea4730d447543fb58c5 https://www.encodeproject.org/files/ENCFF909FST/@@download/ENCFF909FST.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF680EQI bed narrowPeak optimal idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF135ZRF, ENCFF293CHO, ENCFF855GZK 584258 ENCODE Processing Pipeline 9d368ef9b978b7bef392898995c638bd https://www.encodeproject.org/files/ENCFF680EQI/@@download/ENCFF680EQI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099XLK bigBed narrowPeak conservative idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF909FST 928358 ENCODE Processing Pipeline 759f3970ef29a288bf84fbc1fd086e06 https://www.encodeproject.org/files/ENCFF099XLK/@@download/ENCFF099XLK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF296IBC bigBed narrowPeak optimal idr thresholded peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF680EQI 1207704 ENCODE Processing Pipeline 20835a006bedc0302d0dbb0e5df78f5f https://www.encodeproject.org/files/ENCFF296IBC/@@download/ENCFF296IBC.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000WFW bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGD 351434930 Michael Snyder, Stanford ad6c1639ab12b9e7a339f44abab9b5f3 https://www.encodeproject.org/files/ENCFF000WFW/@@download/ENCFF000WFW.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFX bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFS 3538291 Michael Snyder, Stanford 2e69af20bb1ce6247c54f6bb7c9b2ac9 https://www.encodeproject.org/files/ENCFF000WFX/@@download/ENCFF000WFX.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFY bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGE 355250413 Michael Snyder, Stanford 8b91130f9cca474b873481c37f998298 https://www.encodeproject.org/files/ENCFF000WFY/@@download/ENCFF000WFY.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WGA bigWig signal ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 432757124 Michael Snyder, Stanford 80df6c8216b414e8d95ce461caf6b6f9 https://www.encodeproject.org/files/ENCFF000WGA/@@download/ENCFF000WGA.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WGD fastq reads ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 927422795 Michael Snyder, Stanford bfa434e4db6870c4141de3cbacbf3337 https://www.encodeproject.org/files/ENCFF000WGD/@@download/ENCFF000WGD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WGE fastq reads ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 933641884 Michael Snyder, Stanford e902b515ee3de1842faf708c3a0f69e2 https://www.encodeproject.org/files/ENCFF000WGE/@@download/ENCFF000WGE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VFS bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1468202 Michael Snyder, Stanford c6eff4ad100a09e63982e50993eea18d https://www.encodeproject.org/files/ENCFF001VFS/@@download/ENCFF001VFS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPU bed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 358444 ENCODE Consortium Analysis Working Group dceffa9354c6b6713497fa7e0050fd09 https://www.encodeproject.org/files/ENCFF002CPU/@@download/ENCFF002CPU.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF169RDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPU 883496 ENCODE Consortium 7ac8db304670ca09b4ad2dd0a4c57020 https://www.encodeproject.org/files/ENCFF169RDM/@@download/ENCFF169RDM.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF616FGG bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF643CGH 1004029591 ENCODE Processing Pipeline 7de446541291a3e9c2067309c4ef65df https://www.encodeproject.org/files/ENCFF616FGG/@@download/ENCFF616FGG.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF042NGB bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF643CGH 1000133729 ENCODE Processing Pipeline bf70fd6d45797f79980150039dd083a0 https://www.encodeproject.org/files/ENCFF042NGB/@@download/ENCFF042NGB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF070YVD bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF643CGH 554273499 ENCODE Processing Pipeline d9e23a315ebf032c2e84f19c3aafdeac https://www.encodeproject.org/files/ENCFF070YVD/@@download/ENCFF070YVD.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF473BSK bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF643CGH 549214024 ENCODE Processing Pipeline 0cbee7214e53e253cc22ae240632aaca https://www.encodeproject.org/files/ENCFF473BSK/@@download/ENCFF473BSK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF366GBN bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF807MUK 1000545219 ENCODE Processing Pipeline 09087ec299038f84b4610f2679d1de63 https://www.encodeproject.org/files/ENCFF366GBN/@@download/ENCFF366GBN.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF775OFL bam unfiltered alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF807MUK 996297970 ENCODE Processing Pipeline 8d8ee1f9d3e5f4609ef62c5bd2014d53 https://www.encodeproject.org/files/ENCFF775OFL/@@download/ENCFF775OFL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF172BTO bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF807MUK 547811885 ENCODE Processing Pipeline 9eddd43db461209cd810a2c252c00378 https://www.encodeproject.org/files/ENCFF172BTO/@@download/ENCFF172BTO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF417TCH bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF807MUK 553380359 ENCODE Processing Pipeline 8c4e535a29272c9bc5742e56f5dab91f https://www.encodeproject.org/files/ENCFF417TCH/@@download/ENCFF417TCH.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384TEU bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 198943560 ENCODE Processing Pipeline 82cc29cb5e0e808eedd05582c574f0a9 https://www.encodeproject.org/files/ENCFF384TEU/@@download/ENCFF384TEU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF260JEF bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 192735828 ENCODE Processing Pipeline 11be8b5d2866abff0d49d0f43aab623b https://www.encodeproject.org/files/ENCFF260JEF/@@download/ENCFF260JEF.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF528EPB bed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF317FDH, ENCFF686FNX, ENCFF792ZIP 143025 ENCODE Processing Pipeline 3f618a697af113be4d5edb9d7305f227 https://www.encodeproject.org/files/ENCFF528EPB/@@download/ENCFF528EPB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF809ZOV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF277VDY 368808 ENCODE Processing Pipeline 782f3733b490029fe4f85ddd82bb96ee https://www.encodeproject.org/files/ENCFF809ZOV/@@download/ENCFF809ZOV.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF692LUA bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 224765102 ENCODE Processing Pipeline 527baf6ee0663a1209f4903b8d7fa65b https://www.encodeproject.org/files/ENCFF692LUA/@@download/ENCFF692LUA.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460ZWU bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 78773939 ENCODE Processing Pipeline 409d4705d196bd6928cbdb1b6fa354a6 https://www.encodeproject.org/files/ENCFF460ZWU/@@download/ENCFF460ZWU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF526WWD bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF172BTO, ENCFF417TCH, ENCFF545DZO 403694096 ENCODE Processing Pipeline 8ba3cfd66d2d8cd19909af1acfe9d07b https://www.encodeproject.org/files/ENCFF526WWD/@@download/ENCFF526WWD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF686FNX bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 4325250 ENCODE Processing Pipeline 93d52258ba022f5ef861b11690044ca5 https://www.encodeproject.org/files/ENCFF686FNX/@@download/ENCFF686FNX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF921MLY bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF686FNX 10111401 ENCODE Processing Pipeline 6e6ee0a63ca36961168753a528792023 https://www.encodeproject.org/files/ENCFF921MLY/@@download/ENCFF921MLY.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF814JBL bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF317FDH 13024955 ENCODE Processing Pipeline f838ec69a8ab6eae34e8db0347b46613 https://www.encodeproject.org/files/ENCFF814JBL/@@download/ENCFF814JBL.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF320STF bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF172BTO, ENCFF417TCH, ENCFF545DZO 184329480 ENCODE Processing Pipeline 02a7f102fc1f41b03ea62cdc820c0e7b https://www.encodeproject.org/files/ENCFF320STF/@@download/ENCFF320STF.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF739UCO bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF792ZIP 10165152 ENCODE Processing Pipeline c69c477b3ab67dd7356bc337c3fb731f https://www.encodeproject.org/files/ENCFF739UCO/@@download/ENCFF739UCO.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF277VDY bed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF317FDH, ENCFF686FNX, ENCFF792ZIP 154015 ENCODE Processing Pipeline 5e7d9db0cbef87de4528e14c15dfb940 https://www.encodeproject.org/files/ENCFF277VDY/@@download/ENCFF277VDY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF792ZIP bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 4381457 ENCODE Processing Pipeline 1a77a8e34772bfb1b886570b27b199b9 https://www.encodeproject.org/files/ENCFF792ZIP/@@download/ENCFF792ZIP.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF317FDH bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF172BTO, ENCFF417TCH, ENCFF545DZO 5307806 ENCODE Processing Pipeline 19115d9736cc13c2760296a8d835127a https://www.encodeproject.org/files/ENCFF317FDH/@@download/ENCFF317FDH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354MYM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF528EPB 347639 ENCODE Processing Pipeline f0551ae26c793d11e3160d87ff49036f https://www.encodeproject.org/files/ENCFF354MYM/@@download/ENCFF354MYM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460UDO bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070YVD, ENCFF477ZKJ 78843675 ENCODE Processing Pipeline 5a7488956f4f9ac78152b09101111159 https://www.encodeproject.org/files/ENCFF460UDO/@@download/ENCFF460UDO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF429UBV bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF234QBV 13023000 ENCODE Processing Pipeline 143f6376610f87892f397acf4ca50b82 https://www.encodeproject.org/files/ENCFF429UBV/@@download/ENCFF429UBV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF490RLJ bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070YVD, ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 185418517 ENCODE Processing Pipeline a61420444291676ccbe68fdb487628eb https://www.encodeproject.org/files/ENCFF490RLJ/@@download/ENCFF490RLJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF262WAX bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 226102840 ENCODE Processing Pipeline 213848f91e5545e5b9595c038d375562 https://www.encodeproject.org/files/ENCFF262WAX/@@download/ENCFF262WAX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF234QBV bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070YVD, ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 5306606 ENCODE Processing Pipeline 656a052b6d430c3107717076229f5cd3 https://www.encodeproject.org/files/ENCFF234QBV/@@download/ENCFF234QBV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460LVD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF679UWZ 351438 ENCODE Processing Pipeline f794d867826837e88bd23f87df355e72 https://www.encodeproject.org/files/ENCFF460LVD/@@download/ENCFF460LVD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF597JNS bigWig signal p-value ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 198999704 ENCODE Processing Pipeline 9143362c8a743843fef31f213a6fd8d0 https://www.encodeproject.org/files/ENCFF597JNS/@@download/ENCFF597JNS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF756TZR bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070YVD, ENCFF477ZKJ 192428280 ENCODE Processing Pipeline 01272f4db346ce333a8c1bc5a94dbb6f https://www.encodeproject.org/files/ENCFF756TZR/@@download/ENCFF756TZR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF112DTU bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 4386985 ENCODE Processing Pipeline 78ee7ab6018562343915da06b5f295c0 https://www.encodeproject.org/files/ENCFF112DTU/@@download/ENCFF112DTU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF016PPO bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070YVD, ENCFF477ZKJ 4329439 ENCODE Processing Pipeline 8bb822f22b9f352dd2e893302b80d30c https://www.encodeproject.org/files/ENCFF016PPO/@@download/ENCFF016PPO.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF902KWM bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF112DTU 10161885 ENCODE Processing Pipeline 0fb8184d30ce86bd57f9f4e6b8884e69 https://www.encodeproject.org/files/ENCFF902KWM/@@download/ENCFF902KWM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF728KTY bigBed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF016PPO 10132061 ENCODE Processing Pipeline 25d735d3179c4e9fe0b2134a0cddee1b https://www.encodeproject.org/files/ENCFF728KTY/@@download/ENCFF728KTY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF483PQP bigWig fold change over control ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070YVD, ENCFF473BSK, ENCFF477ZKJ, ENCFF710SMS 407905806 ENCODE Processing Pipeline 574336cac8506aa71bbfa9f05c1de020 https://www.encodeproject.org/files/ENCFF483PQP/@@download/ENCFF483PQP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF679UWZ bed narrowPeak conservative idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016PPO, ENCFF112DTU, ENCFF234QBV, ENCFF419RSJ 146062 ENCODE Processing Pipeline 05eae9fc6a999168fabc4577bb92ef9d https://www.encodeproject.org/files/ENCFF679UWZ/@@download/ENCFF679UWZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514DDI bed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016PPO, ENCFF112DTU, ENCFF234QBV, ENCFF419RSJ 166606 ENCODE Processing Pipeline e2503b1b48664f49415ce2ae99a48770 https://www.encodeproject.org/files/ENCFF514DDI/@@download/ENCFF514DDI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF724AGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF514DDI 387905 ENCODE Processing Pipeline 66e0f610b7bb3473bf3ea08fdfd46842 https://www.encodeproject.org/files/ENCFF724AGT/@@download/ENCFF724AGT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF763NHP fastq reads ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1309429698 Richard Myers, HAIB 72f29b8a93451a717e22673182d47201 SRA:SRR5338784 https://www.encodeproject.org/files/ENCFF763NHP/@@download/ENCFF763NHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF040QAY fastq reads ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1413295997 Richard Myers, HAIB 23f21dbb0d05e2c8eef27c5bff916a1d SRA:SRR5338785 https://www.encodeproject.org/files/ENCFF040QAY/@@download/ENCFF040QAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF799EAP bam unfiltered alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF040QAY, ENCFF807MUK 1679002569 ENCODE Processing Pipeline a0f8d6c5b944130606cb8e218c02e196 https://www.encodeproject.org/files/ENCFF799EAP/@@download/ENCFF799EAP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF148ZQD bam unfiltered alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF763NHP 1551983097 ENCODE Processing Pipeline 1a7251d69187b21ae9b9701c3751633e https://www.encodeproject.org/files/ENCFF148ZQD/@@download/ENCFF148ZQD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF665GTT bam unfiltered alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF040QAY, ENCFF643CGH 1682616625 ENCODE Processing Pipeline 22c2fb293f0cee53ee73d6f67b613086 https://www.encodeproject.org/files/ENCFF665GTT/@@download/ENCFF665GTT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF598NNI bam unfiltered alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF763NHP, ENCFF807MUK 1548337155 ENCODE Processing Pipeline 576534bfba51a0dc734e3644722126fc https://www.encodeproject.org/files/ENCFF598NNI/@@download/ENCFF598NNI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF330XIE bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF763NHP 1206532281 ENCODE Processing Pipeline a6201959cbf9d7974aeeeb0ce034b1de https://www.encodeproject.org/files/ENCFF330XIE/@@download/ENCFF330XIE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF133REZ bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF763NHP, ENCFF807MUK 1205950595 ENCODE Processing Pipeline c96e4bc3b97202dac1000b5e7b049ec3 https://www.encodeproject.org/files/ENCFF133REZ/@@download/ENCFF133REZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF166DDT bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF040QAY, ENCFF807MUK 1321791220 ENCODE Processing Pipeline f80321d7dc7792df64a3d08db054d6d7 https://www.encodeproject.org/files/ENCFF166DDT/@@download/ENCFF166DDT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF191DNO bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF040QAY, ENCFF643CGH 1322490442 ENCODE Processing Pipeline cbba37a68dc5680fbe950afa3d4a4518 https://www.encodeproject.org/files/ENCFF191DNO/@@download/ENCFF191DNO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF268ZIP bigWig signal p-value ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF330XIE 507195086 ENCODE Processing Pipeline e811d1b57cbd9681b3c36dfafc376f02 https://www.encodeproject.org/files/ENCFF268ZIP/@@download/ENCFF268ZIP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF594FSH bigWig signal p-value ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF191DNO 529558159 ENCODE Processing Pipeline d9b819188fc0c669da75ded9aa223f5c https://www.encodeproject.org/files/ENCFF594FSH/@@download/ENCFF594FSH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF751KMZ bigWig fold change over control ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF191DNO 500512614 ENCODE Processing Pipeline 66e4dcb6bc72497f90398cb6b57108f0 https://www.encodeproject.org/files/ENCFF751KMZ/@@download/ENCFF751KMZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF259WJH bigWig signal p-value ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF191DNO, ENCFF330XIE 642258526 ENCODE Processing Pipeline 667075f3cf432ed71a3e1496986f8b55 https://www.encodeproject.org/files/ENCFF259WJH/@@download/ENCFF259WJH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF179FEJ bigWig fold change over control ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF330XIE 480192946 ENCODE Processing Pipeline 50a211664cf3ade70eca72c16787fa32 https://www.encodeproject.org/files/ENCFF179FEJ/@@download/ENCFF179FEJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF922ZYU bigWig fold change over control ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF191DNO, ENCFF330XIE 790559841 ENCODE Processing Pipeline d4cd23694aa473e308083f5850ba6916 https://www.encodeproject.org/files/ENCFF922ZYU/@@download/ENCFF922ZYU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF437XJD bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF191DNO 6244349 ENCODE Processing Pipeline 11f4ff216a55b59a9008b3a70704607d https://www.encodeproject.org/files/ENCFF437XJD/@@download/ENCFF437XJD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF442QZP bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF330XIE 6434278 ENCODE Processing Pipeline 9a372b60604b2f48ce8fc2fddd6cec98 https://www.encodeproject.org/files/ENCFF442QZP/@@download/ENCFF442QZP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF952OXH bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF191DNO, ENCFF330XIE 6854288 ENCODE Processing Pipeline e3cc1875e235d0804be9e0a47cdceac3 https://www.encodeproject.org/files/ENCFF952OXH/@@download/ENCFF952OXH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF274JRK bigBed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF437XJD 12867292 ENCODE Processing Pipeline bc5c7a1370c885c2ed0b2e458e808d1e https://www.encodeproject.org/files/ENCFF274JRK/@@download/ENCFF274JRK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF423NNZ bigBed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF442QZP 12871348 ENCODE Processing Pipeline 77e7a04a54870aae354c136d257e1d66 https://www.encodeproject.org/files/ENCFF423NNZ/@@download/ENCFF423NNZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF297COS bigBed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF952OXH 12755182 ENCODE Processing Pipeline fc4526b864253b8b549f24b38be0c889 https://www.encodeproject.org/files/ENCFF297COS/@@download/ENCFF297COS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF581CQM bed narrowPeak conservative idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF437XJD, ENCFF442QZP, ENCFF952OXH 352154 ENCODE Processing Pipeline 1f78e0510710364d61e0235d6e8970e5 https://www.encodeproject.org/files/ENCFF581CQM/@@download/ENCFF581CQM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF746VYH bigBed narrowPeak conservative idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF581CQM 690636 ENCODE Processing Pipeline b5742d8bd6071de70fd98191fd95af3e https://www.encodeproject.org/files/ENCFF746VYH/@@download/ENCFF746VYH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF523CUM bed narrowPeak optimal idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF437XJD, ENCFF442QZP, ENCFF952OXH 381389 ENCODE Processing Pipeline 44061eab9876767c717614b09b1f1afe https://www.encodeproject.org/files/ENCFF523CUM/@@download/ENCFF523CUM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF448IHK bigBed narrowPeak optimal idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF523CUM 735165 ENCODE Processing Pipeline a87c87b00207efe0b374a1ee0ed4c9c1 https://www.encodeproject.org/files/ENCFF448IHK/@@download/ENCFF448IHK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF982PUO bigWig signal p-value ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF166DDT, ENCFF203ABR 1212196126 ENCODE Processing Pipeline d4e8c5c301c553a030e2fd12ab961bf2 https://www.encodeproject.org/files/ENCFF982PUO/@@download/ENCFF982PUO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681EGM bigWig signal p-value ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF133REZ, ENCFF203ABR 1181328592 ENCODE Processing Pipeline b6eee0c7053813c662e880107a675e91 https://www.encodeproject.org/files/ENCFF681EGM/@@download/ENCFF681EGM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF498UPT bigWig signal p-value ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF133REZ, ENCFF166DDT, ENCFF203ABR 1308635312 ENCODE Processing Pipeline 6c4d4ef2e4a55fb414653cee263cd99a https://www.encodeproject.org/files/ENCFF498UPT/@@download/ENCFF498UPT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF490ZGO bigWig fold change over control ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF166DDT, ENCFF203ABR 947776197 ENCODE Processing Pipeline dd105dc844f7e39b24c9060a48cee192 https://www.encodeproject.org/files/ENCFF490ZGO/@@download/ENCFF490ZGO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF451DFC bigWig fold change over control ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF133REZ, ENCFF203ABR 851473282 ENCODE Processing Pipeline 55510deb5e2f49be0fffec39036fc47d https://www.encodeproject.org/files/ENCFF451DFC/@@download/ENCFF451DFC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF952ZYO bigWig fold change over control ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF133REZ, ENCFF166DDT, ENCFF203ABR 1409406034 ENCODE Processing Pipeline 40971a5f536096763c2d45ea675d861e https://www.encodeproject.org/files/ENCFF952ZYO/@@download/ENCFF952ZYO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF331PEV bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF166DDT, ENCFF203ABR 6774249 ENCODE Processing Pipeline 46a1a129b257b17f3e613d71becc23d4 https://www.encodeproject.org/files/ENCFF331PEV/@@download/ENCFF331PEV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF659PMQ bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF133REZ, ENCFF203ABR 6845292 ENCODE Processing Pipeline 09972bea82549ed9d4c64068f54edcd4 https://www.encodeproject.org/files/ENCFF659PMQ/@@download/ENCFF659PMQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF114REO bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF133REZ, ENCFF166DDT, ENCFF203ABR 7127179 ENCODE Processing Pipeline 958ab5c0c30599d3f564a66e25b8a2e7 https://www.encodeproject.org/files/ENCFF114REO/@@download/ENCFF114REO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF994ZQN bigBed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF331PEV 12787995 ENCODE Processing Pipeline 22d3e226f5ef24b2cce575d2166bfa81 https://www.encodeproject.org/files/ENCFF994ZQN/@@download/ENCFF994ZQN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF975QMD bigBed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF659PMQ 12725500 ENCODE Processing Pipeline 1e7f66ae7f551fc4026d5466731a776a https://www.encodeproject.org/files/ENCFF975QMD/@@download/ENCFF975QMD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF345CNY bed narrowPeak conservative idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF114REO, ENCFF331PEV, ENCFF659PMQ 362852 ENCODE Processing Pipeline 2a0d370d00e48d7c4345dfa39a4c5fb8 https://www.encodeproject.org/files/ENCFF345CNY/@@download/ENCFF345CNY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF525JFC bigBed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF114REO 12740959 ENCODE Processing Pipeline ca1a12d1f9972e36a043d1058af02261 https://www.encodeproject.org/files/ENCFF525JFC/@@download/ENCFF525JFC.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF788BBU bigBed narrowPeak conservative idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF345CNY 737985 ENCODE Processing Pipeline 1f080632a870afc0d6114d9842b621e0 https://www.encodeproject.org/files/ENCFF788BBU/@@download/ENCFF788BBU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF529VDF bed narrowPeak optimal idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF114REO, ENCFF331PEV, ENCFF659PMQ 375868 ENCODE Processing Pipeline 57a502e8f6aa3e33867111cec967ebdf https://www.encodeproject.org/files/ENCFF529VDF/@@download/ENCFF529VDF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685LGU bigBed narrowPeak optimal idr thresholded peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF529VDF 757768 ENCODE Processing Pipeline 9855dec0787ffea4239ba70f38918ddf https://www.encodeproject.org/files/ENCFF685LGU/@@download/ENCFF685LGU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF900MMA fastq reads ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1859584382 Richard Myers, HAIB 3d4322ea1ab91fe13091ed7ac7d856a5 https://www.encodeproject.org/files/ENCFF900MMA/@@download/ENCFF900MMA.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF111VQQ bam unfiltered alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 76 ENCFF643CGH, ENCFF900MMA 2154150312 ENCODE Processing Pipeline c7b128e407b2bb123d5cc81de5179b36 https://www.encodeproject.org/files/ENCFF111VQQ/@@download/ENCFF111VQQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF632RYR bam unfiltered alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 76 ENCFF807MUK, ENCFF900MMA 2150397518 ENCODE Processing Pipeline fae4244a0a4c040f950e7dc92420d3ae https://www.encodeproject.org/files/ENCFF632RYR/@@download/ENCFF632RYR.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF291ZML bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 76 ENCFF807MUK, ENCFF900MMA 1622664338 ENCODE Processing Pipeline 1591b6fb6c36d6c60b079b4174bd6bf0 https://www.encodeproject.org/files/ENCFF291ZML/@@download/ENCFF291ZML.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF679DHO bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 76 ENCFF643CGH, ENCFF900MMA 1623315757 ENCODE Processing Pipeline 5b44661a53e49c005e28c47a7751ce82 https://www.encodeproject.org/files/ENCFF679DHO/@@download/ENCFF679DHO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF531SNZ fastq reads ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 1476459167 Richard Myers, HAIB 6d18419818c41c9804ea00499d77ac5a https://www.encodeproject.org/files/ENCFF531SNZ/@@download/ENCFF531SNZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF651LLF bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 76 ENCFF531SNZ, ENCFF807MUK 1312495159 ENCODE Processing Pipeline 0b11b74ff1697fac3f631abb43170c5a https://www.encodeproject.org/files/ENCFF651LLF/@@download/ENCFF651LLF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF127GBN bam unfiltered alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 76 ENCFF531SNZ, ENCFF807MUK 1742775852 ENCODE Processing Pipeline 6f2eed46c42d03f16a0753e0c7a45bc1 https://www.encodeproject.org/files/ENCFF127GBN/@@download/ENCFF127GBN.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF919FST bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 76 ENCFF531SNZ, ENCFF643CGH 1313061115 ENCODE Processing Pipeline 487f2344ef7ce0f9dee610202b5f3384 https://www.encodeproject.org/files/ENCFF919FST/@@download/ENCFF919FST.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF205ZPU bam unfiltered alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 76 ENCFF531SNZ, ENCFF643CGH 1746150970 ENCODE Processing Pipeline 26b85abd709f537b7fb18acd6d398d15 https://www.encodeproject.org/files/ENCFF205ZPU/@@download/ENCFF205ZPU.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF168NJD bigWig fold change over control ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF679DHO 580071598 ENCODE Processing Pipeline a68aac0f694bfd7dd5bb490a7cda8b2e https://www.encodeproject.org/files/ENCFF168NJD/@@download/ENCFF168NJD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF685TYK bigWig signal p-value ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF679DHO, ENCFF919FST 656946742 ENCODE Processing Pipeline da1c6f1b88103e397793135281e28f6a https://www.encodeproject.org/files/ENCFF685TYK/@@download/ENCFF685TYK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF045DTY bigWig signal p-value ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF651LLF 532868232 ENCODE Processing Pipeline d0625f7fda25963f4bbcfe3fa88f7d91 https://www.encodeproject.org/files/ENCFF045DTY/@@download/ENCFF045DTY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF169BNX bigWig fold change over control ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF651LLF 463458198 ENCODE Processing Pipeline 0c022b6317b17f2b003bf2670e726232 https://www.encodeproject.org/files/ENCFF169BNX/@@download/ENCFF169BNX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF015LLH bigWig fold change over control ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF919FST 464366286 ENCODE Processing Pipeline 94864776e3db428a2de934715a27bd0d https://www.encodeproject.org/files/ENCFF015LLH/@@download/ENCFF015LLH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF322KIX bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF651LLF 6320836 ENCODE Processing Pipeline 9cafc5f3c77bfcdbc783b9446a3b8954 https://www.encodeproject.org/files/ENCFF322KIX/@@download/ENCFF322KIX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF102EAT bigBed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF652QAE 12842035 ENCODE Processing Pipeline fb4164a0b7915cb59dcd9a6c0378b52c https://www.encodeproject.org/files/ENCFF102EAT/@@download/ENCFF102EAT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF671KFL bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF291ZML, ENCFF651LLF 6903399 ENCODE Processing Pipeline 2462be09a96657e944136920123b96f4 https://www.encodeproject.org/files/ENCFF671KFL/@@download/ENCFF671KFL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF797TQJ bigWig signal p-value ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF679DHO 608827214 ENCODE Processing Pipeline bf9e0269d47028c40635168a65aed741 https://www.encodeproject.org/files/ENCFF797TQJ/@@download/ENCFF797TQJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF764LLV bigWig fold change over control ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF291ZML, ENCFF651LLF 873277066 ENCODE Processing Pipeline 7465aded4c3956f1442c6c8ab97d76fd https://www.encodeproject.org/files/ENCFF764LLV/@@download/ENCFF764LLV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF974NPO bigBed narrowPeak optimal idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF239IZV 1006805 ENCODE Processing Pipeline 4d0a527ae9c3b3fb7ab26d2ff6fd4f0a https://www.encodeproject.org/files/ENCFF974NPO/@@download/ENCFF974NPO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF340MZG bigWig signal p-value ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF291ZML 599984704 ENCODE Processing Pipeline bc112849dde5fbed3787082ad7bf2462 https://www.encodeproject.org/files/ENCFF340MZG/@@download/ENCFF340MZG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF396HUO bigWig signal p-value ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF291ZML, ENCFF651LLF 653798836 ENCODE Processing Pipeline 6e0e02e26da08318ffe80caa82b518f3 https://www.encodeproject.org/files/ENCFF396HUO/@@download/ENCFF396HUO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF412SRT bigWig fold change over control ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF291ZML 564773633 ENCODE Processing Pipeline 6d9196753e0d3f84604b4b564bb7421c https://www.encodeproject.org/files/ENCFF412SRT/@@download/ENCFF412SRT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF201IIO bigWig signal p-value ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF919FST 540693107 ENCODE Processing Pipeline ff455c0e609c0b22eecd4935b5b7c8ec https://www.encodeproject.org/files/ENCFF201IIO/@@download/ENCFF201IIO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF652QAE bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF291ZML 6497568 ENCODE Processing Pipeline 5ffc86ed3b483d86f98fc708fc447978 https://www.encodeproject.org/files/ENCFF652QAE/@@download/ENCFF652QAE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF918CES bigBed narrowPeak conservative idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF565FCW 899970 ENCODE Processing Pipeline 670b5463ca3669d8453896490adffb80 https://www.encodeproject.org/files/ENCFF918CES/@@download/ENCFF918CES.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF453VLW bigWig fold change over control ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF679DHO, ENCFF919FST 872754044 ENCODE Processing Pipeline dab2f21dc4f60cf65357365d4a4f73ec https://www.encodeproject.org/files/ENCFF453VLW/@@download/ENCFF453VLW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF131ZTN bigBed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF322KIX 12881323 ENCODE Processing Pipeline 67094d7433cb05e96b3f7b2b232bbb45 https://www.encodeproject.org/files/ENCFF131ZTN/@@download/ENCFF131ZTN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF887YRZ bigBed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF671KFL 12788851 ENCODE Processing Pipeline 9f19bf0f015c8126999700e75922984b https://www.encodeproject.org/files/ENCFF887YRZ/@@download/ENCFF887YRZ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF565FCW bed narrowPeak conservative idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF322KIX, ENCFF652QAE, ENCFF671KFL 460677 ENCODE Processing Pipeline 2ce09cd8c2f23461a5af6aac75808249 https://www.encodeproject.org/files/ENCFF565FCW/@@download/ENCFF565FCW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF239IZV bed narrowPeak optimal idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF322KIX, ENCFF652QAE, ENCFF671KFL 531701 ENCODE Processing Pipeline 81031e4ee612c83893a9c028af52bcf2 https://www.encodeproject.org/files/ENCFF239IZV/@@download/ENCFF239IZV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF502MZI bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF679DHO, ENCFF919FST 6890938 ENCODE Processing Pipeline 86afda1603b263d6f0fee548b1378b76 https://www.encodeproject.org/files/ENCFF502MZI/@@download/ENCFF502MZI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF947MWL bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF919FST 6264427 ENCODE Processing Pipeline 7ba977f38110237d27f4d5abb75b6f6c https://www.encodeproject.org/files/ENCFF947MWL/@@download/ENCFF947MWL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF424VCL bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF679DHO 6508102 ENCODE Processing Pipeline c27110fb89674213f7455e13f64d9b3d https://www.encodeproject.org/files/ENCFF424VCL/@@download/ENCFF424VCL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF912MOF bigBed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF947MWL 12818494 ENCODE Processing Pipeline 8becdd0b974750aa4d2c75d55e8885a5 https://www.encodeproject.org/files/ENCFF912MOF/@@download/ENCFF912MOF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF665AYT bigBed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF502MZI 12796437 ENCODE Processing Pipeline ab66cae4fd2598efc752afb730a2a947 https://www.encodeproject.org/files/ENCFF665AYT/@@download/ENCFF665AYT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF552EJL bigBed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF424VCL 12887549 ENCODE Processing Pipeline d9879234094643c4aef03d3585e3c1ee https://www.encodeproject.org/files/ENCFF552EJL/@@download/ENCFF552EJL.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF663FWZ bed narrowPeak conservative idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF424VCL, ENCFF502MZI, ENCFF947MWL 458810 ENCODE Processing Pipeline 3572b35ee62a41ceaa3fb0b0bdefb301 https://www.encodeproject.org/files/ENCFF663FWZ/@@download/ENCFF663FWZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF597IFG bigBed narrowPeak conservative idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF663FWZ 898186 ENCODE Processing Pipeline 2b37d22debb4f7bb96d63cadda37d8f3 https://www.encodeproject.org/files/ENCFF597IFG/@@download/ENCFF597IFG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF095ZXG bed narrowPeak optimal idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF424VCL, ENCFF502MZI, ENCFF947MWL 535362 ENCODE Processing Pipeline 5fea382482c6dc4e5f638a95a4b5deab https://www.encodeproject.org/files/ENCFF095ZXG/@@download/ENCFF095ZXG.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF143RYS bigBed narrowPeak optimal idr thresholded peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF095ZXG 1014690 ENCODE Processing Pipeline 200c5174da6ab118375848ff3b76aeb3 https://www.encodeproject.org/files/ENCFF143RYS/@@download/ENCFF143RYS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF019HPW fastq reads ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF176BWH 2274962163 Michael Snyder, Stanford fd02eb481e7255804f336b69e3068118 SRA:SRR6213117 https://www.encodeproject.org/files/ENCFF019HPW/@@download/ENCFF019HPW.fastq.gz Illumina HiSeq 4000 /files/ENCFF568ZUY/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF176BWH fastq reads ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF019HPW 2047222197 Michael Snyder, Stanford 74b4338675c1a264cab9a787507878bd SRA:SRR6213117 https://www.encodeproject.org/files/ENCFF176BWH/@@download/ENCFF176BWH.fastq.gz Illumina HiSeq 4000 /files/ENCFF878DLI/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF890NVQ bam unfiltered alignments ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF019HPW, ENCFF176BWH, ENCFF807MUK 3896519617 ENCODE Processing Pipeline 168d903370de55d086f31dc7294444c3 https://www.encodeproject.org/files/ENCFF890NVQ/@@download/ENCFF890NVQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF273NSF bam alignments ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF019HPW, ENCFF176BWH, ENCFF807MUK 2985548374 ENCODE Processing Pipeline 7c111b29748565a7e2b7241c3ee4a12c https://www.encodeproject.org/files/ENCFF273NSF/@@download/ENCFF273NSF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF063JSL bam unfiltered alignments ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF019HPW, ENCFF176BWH, ENCFF643CGH 3898577522 ENCODE Processing Pipeline be5f398a97782c7e1c1a058161d67f46 https://www.encodeproject.org/files/ENCFF063JSL/@@download/ENCFF063JSL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF098GAO bam alignments ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF019HPW, ENCFF176BWH, ENCFF643CGH 2987483517 ENCODE Processing Pipeline 215110a2c4d25aa1c09fb12ff882b6f0 https://www.encodeproject.org/files/ENCFF098GAO/@@download/ENCFF098GAO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF599MIK bigWig signal p-value ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF098GAO, ENCFF607WQU 820937415 ENCODE Processing Pipeline a1c820cdf4a077705b806649ec6e580f https://www.encodeproject.org/files/ENCFF599MIK/@@download/ENCFF599MIK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF859GUF bigWig fold change over control ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF098GAO, ENCFF607WQU 884767102 ENCODE Processing Pipeline 182bbd298cd611d58dabb3cd0f00b3f8 https://www.encodeproject.org/files/ENCFF859GUF/@@download/ENCFF859GUF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF619FOL bed narrowPeak peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF098GAO, ENCFF607WQU 6456176 ENCODE Processing Pipeline 2727dbf5626e8bf92658b67d099ad106 https://www.encodeproject.org/files/ENCFF619FOL/@@download/ENCFF619FOL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF501FUQ bigWig fold change over control ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF273NSF, ENCFF639BGL 885526054 ENCODE Processing Pipeline 864cb8288cd067f9daaee34b03fbea4a https://www.encodeproject.org/files/ENCFF501FUQ/@@download/ENCFF501FUQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF995ZCM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF306CZZ 1425011 ENCODE Processing Pipeline 1f18caf5c46c0743d43794b3769a9f7b https://www.encodeproject.org/files/ENCFF995ZCM/@@download/ENCFF995ZCM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF730HTN bigWig signal p-value ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF273NSF, ENCFF639BGL 974015346 ENCODE Processing Pipeline b858ac4a3c6a606ae0919f173b0644bf https://www.encodeproject.org/files/ENCFF730HTN/@@download/ENCFF730HTN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF306CZZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF619FOL 593909 ENCODE Processing Pipeline 69922e561df843b6e2df243ac75b5b24 https://www.encodeproject.org/files/ENCFF306CZZ/@@download/ENCFF306CZZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF994CVU bed narrowPeak peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF273NSF, ENCFF639BGL 6399026 ENCODE Processing Pipeline 0277f84646fa4c41222a7e429b22a416 https://www.encodeproject.org/files/ENCFF994CVU/@@download/ENCFF994CVU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF801LJI bigBed narrowPeak peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF994CVU 13478142 ENCODE Processing Pipeline eae6036693e20605283ecbf68d84408b https://www.encodeproject.org/files/ENCFF801LJI/@@download/ENCFF801LJI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF760CPU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF994CVU 578188 ENCODE Processing Pipeline 0203b1135d25c5fea2b3b67528cbea14 https://www.encodeproject.org/files/ENCFF760CPU/@@download/ENCFF760CPU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF124ELK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF760CPU 1397264 ENCODE Processing Pipeline 5d54f9c5a0c997fd42562d8f1c941e81 https://www.encodeproject.org/files/ENCFF124ELK/@@download/ENCFF124ELK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF720EHF bigBed narrowPeak peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF619FOL 13556043 ENCODE Processing Pipeline 02d9d95dc2d00c7281ba6e03b60555a1 https://www.encodeproject.org/files/ENCFF720EHF/@@download/ENCFF720EHF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000XUV bam alignments ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF000XUX 365992814 Michael Snyder, Stanford 2c7ea251ab65d724cf70e1c740346efb https://www.encodeproject.org/files/ENCFF000XUV/@@download/ENCFF000XUV.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XUW bigBed narrowPeak peaks ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VKO 1560669 Michael Snyder, Stanford 4a92c39f12a131c5d83785fc09f09840 https://www.encodeproject.org/files/ENCFF000XUW/@@download/ENCFF000XUW.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XUX fastq reads ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 642853264 Michael Snyder, Stanford 7c14e5b275634c6805248c7b3b2cf416 https://www.encodeproject.org/files/ENCFF000XUX/@@download/ENCFF000XUX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XUY bam alignments ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF000XVA 537088678 Michael Snyder, Stanford 54b6d4a3f6d8269e7cc80ea3b0a930af https://www.encodeproject.org/files/ENCFF000XUY/@@download/ENCFF000XUY.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XVA fastq reads ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1056164517 Michael Snyder, Stanford 99a9816b5663de784c0653377577c002 https://www.encodeproject.org/files/ENCFF000XVA/@@download/ENCFF000XVA.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XVC fastq reads ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 3 1 36 single-ended 959657704 Michael Snyder, Stanford 69cb6bfb6890fa3b7074eb2c3aa9d426 https://www.encodeproject.org/files/ENCFF000XVC/@@download/ENCFF000XVC.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XVE bigWig signal ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 497818194 Michael Snyder, Stanford 6c08fdc1ffa52e818a9aa91c80b2858a https://www.encodeproject.org/files/ENCFF000XVE/@@download/ENCFF000XVE.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000XVF bam alignments ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 3 ENCFF000XVC 493782131 Michael Snyder, Stanford 67e6cbfa20fd0983da6037fd8d24d4a0 https://www.encodeproject.org/files/ENCFF000XVF/@@download/ENCFF000XVF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001VKO bed narrowPeak peaks ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 628064 Michael Snyder, Stanford e2694b488344f37776c7a7be622a183c https://www.encodeproject.org/files/ENCFF001VKO/@@download/ENCFF001VKO.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CUL bed narrowPeak optimal idr thresholded peaks ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 521816 ENCODE Consortium Analysis Working Group abb524e774342f5ff70c2f52ffe5ca43 https://www.encodeproject.org/files/ENCFF002CUL/@@download/ENCFF002CUL.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF674SSX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE ENCFF002CUL 1301564 ENCODE Consortium e4174a2f55e2265d3824156bee493c74 https://www.encodeproject.org/files/ENCFF674SSX/@@download/ENCFF674SSX.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000VWX bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 1 527324067 Michael Snyder, Stanford ac50ee8aa72ed7e9ab91fcb8580441a0 https://www.encodeproject.org/files/ENCFF000VWX/@@download/ENCFF000VWX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VWY bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 1 372370718 Michael Snyder, Stanford 4369d89fa777744d5354011d96d45260 https://www.encodeproject.org/files/ENCFF000VWY/@@download/ENCFF000VWY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VWZ bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VEL 171652 Michael Snyder, Stanford c556a0f35d1ee97f1640a32da735860d https://www.encodeproject.org/files/ENCFF000VWZ/@@download/ENCFF000VWZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VXA fastq reads ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 925686314 Michael Snyder, Stanford 266a921f5e9a8ebacf43048f01fbf3a9 https://www.encodeproject.org/files/ENCFF000VXA/@@download/ENCFF000VXA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWF/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VXC fastq reads ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 691944846 Michael Snyder, Stanford 75d5f0d8503011f656faca861e19e78f https://www.encodeproject.org/files/ENCFF000VXC/@@download/ENCFF000VXC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VXF bigWig signal ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 465436268 Michael Snyder, Stanford 0b93d2f124b2d7034f942bd5974cfd84 https://www.encodeproject.org/files/ENCFF000VXF/@@download/ENCFF000VXF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VEL bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 57993 Michael Snyder, Stanford 145c3dff7d66fde17883776c2756fd77 https://www.encodeproject.org/files/ENCFF001VEL/@@download/ENCFF001VEL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF491RPU bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF643CGH 1069976283 ENCODE Processing Pipeline b3860b1abee7a1a3ed6bfb3ef6171bf0 https://www.encodeproject.org/files/ENCFF491RPU/@@download/ENCFF491RPU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF411KDZ bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF643CGH 449059427 ENCODE Processing Pipeline a4f1e314c81f80c43d7f76d8437483d1 https://www.encodeproject.org/files/ENCFF411KDZ/@@download/ENCFF411KDZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF055FUM bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF643CGH 764474509 ENCODE Processing Pipeline 307987d51e3793061026934d6ef602ee https://www.encodeproject.org/files/ENCFF055FUM/@@download/ENCFF055FUM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF764KYI bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF643CGH 724350577 ENCODE Processing Pipeline 914afbbcbeccada93f582d84cd8849cb https://www.encodeproject.org/files/ENCFF764KYI/@@download/ENCFF764KYI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF425XHS bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF807MUK 761483254 ENCODE Processing Pipeline 6d24a4a2a575616ed1dcb38e0935cc2c https://www.encodeproject.org/files/ENCFF425XHS/@@download/ENCFF425XHS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF025JEN bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF807MUK 448374896 ENCODE Processing Pipeline e5651e06c4dec1e9898dd8554e7007e2 https://www.encodeproject.org/files/ENCFF025JEN/@@download/ENCFF025JEN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF860UYK bam unfiltered alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF807MUK 1064592495 ENCODE Processing Pipeline d535e98a97ecb95194bf422a4c49cedc https://www.encodeproject.org/files/ENCFF860UYK/@@download/ENCFF860UYK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF028CUJ bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF807MUK 723896147 ENCODE Processing Pipeline 62683d712fc45b064d5dabda0101c4df https://www.encodeproject.org/files/ENCFF028CUJ/@@download/ENCFF028CUJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF235TOZ bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 254770164 ENCODE Processing Pipeline 20bb421affb29d6a6b49b18d832c9bad https://www.encodeproject.org/files/ENCFF235TOZ/@@download/ENCFF235TOZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF258LKL bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 348935092 ENCODE Processing Pipeline 5db2e9a0525d62404aff45cc789df4e9 https://www.encodeproject.org/files/ENCFF258LKL/@@download/ENCFF258LKL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF505IBJ bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF025JEN, ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 537793367 ENCODE Processing Pipeline 2d54d21431058e8bddd023c4c710f784 https://www.encodeproject.org/files/ENCFF505IBJ/@@download/ENCFF505IBJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF435ICE bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF025JEN, ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 4619469 ENCODE Processing Pipeline 571fecc1b309ea7b6d93788e76acc371 https://www.encodeproject.org/files/ENCFF435ICE/@@download/ENCFF435ICE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF092QPA bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF033WHB 10213956 ENCODE Processing Pipeline 4ac24cec993cebd2e1d79b6f537a894b https://www.encodeproject.org/files/ENCFF092QPA/@@download/ENCFF092QPA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF538WOP bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF025JEN, ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 513783084 ENCODE Processing Pipeline ed19922e025054961e639f7e047e8359 https://www.encodeproject.org/files/ENCFF538WOP/@@download/ENCFF538WOP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF143UMU bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF811UJD 10599246 ENCODE Processing Pipeline 53be16a92446bc5d42a42ec456e7e636 https://www.encodeproject.org/files/ENCFF143UMU/@@download/ENCFF143UMU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF838IXM bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 448271204 ENCODE Processing Pipeline 8277ad060bf6bd881d31a3c5557b2045 https://www.encodeproject.org/files/ENCFF838IXM/@@download/ENCFF838IXM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF794AGY bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 445159602 ENCODE Processing Pipeline 8811cabdf913287bd524e56c94049459 https://www.encodeproject.org/files/ENCFF794AGY/@@download/ENCFF794AGY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF811UJD bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 4081503 ENCODE Processing Pipeline 1ae70b98294604a21ef015e2422e3613 https://www.encodeproject.org/files/ENCFF811UJD/@@download/ENCFF811UJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF033WHB bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 3997652 ENCODE Processing Pipeline 9f73e493214f321be84d88fcc40ae23d https://www.encodeproject.org/files/ENCFF033WHB/@@download/ENCFF033WHB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF289XWN bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF435ICE 11007145 ENCODE Processing Pipeline cf1d35e12097db7628dab2d2cbad7356 https://www.encodeproject.org/files/ENCFF289XWN/@@download/ENCFF289XWN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF017BUS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF321KTX 257133 ENCODE Processing Pipeline 69a2d2021f01345e0a879aed8f77ec17 https://www.encodeproject.org/files/ENCFF017BUS/@@download/ENCFF017BUS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF831SXV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF556PIY 266241 ENCODE Processing Pipeline 3aa3a246f5337989aa6dc9f526c7375e https://www.encodeproject.org/files/ENCFF831SXV/@@download/ENCFF831SXV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF321KTX bed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF033WHB, ENCFF435ICE, ENCFF811UJD 132180 ENCODE Processing Pipeline 87f794238885febeecd10c7eea660d3e https://www.encodeproject.org/files/ENCFF321KTX/@@download/ENCFF321KTX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF556PIY bed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF033WHB, ENCFF435ICE, ENCFF811UJD 138991 ENCODE Processing Pipeline c91d4953e458d7a3d972d8ce9494ff67 https://www.encodeproject.org/files/ENCFF556PIY/@@download/ENCFF556PIY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF648LLP bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW 253093287 ENCODE Processing Pipeline 20a6afa1b84daf3cc0533e38acc15d99 https://www.encodeproject.org/files/ENCFF648LLP/@@download/ENCFF648LLP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF656JQS bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW, ENCFF764KYI 4603939 ENCODE Processing Pipeline a4acc92bdb0d19ad4b90efe6515bef91 https://www.encodeproject.org/files/ENCFF656JQS/@@download/ENCFF656JQS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF189BQS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF330LVI 257249 ENCODE Processing Pipeline c96b5a22b44c6cdba4ae66374548b094 https://www.encodeproject.org/files/ENCFF189BQS/@@download/ENCFF189BQS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF184LOY bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF357LJN 10206367 ENCODE Processing Pipeline 11a62e21a04a95c0d93cf5f478198fa1 https://www.encodeproject.org/files/ENCFF184LOY/@@download/ENCFF184LOY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF161QQL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF873DJD 266375 ENCODE Processing Pipeline 4969352cc9a7698ae67f288079201f5b https://www.encodeproject.org/files/ENCFF161QQL/@@download/ENCFF161QQL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF187LTW bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF450WED, ENCFF579QDW, ENCFF764KYI 4077365 ENCODE Processing Pipeline 74ab1089f76a72f26b83b8b36f072586 https://www.encodeproject.org/files/ENCFF187LTW/@@download/ENCFF187LTW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF405FHW bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF187LTW 10595746 ENCODE Processing Pipeline d1b6954af42dfeaa995d4fdd8032c6a7 https://www.encodeproject.org/files/ENCFF405FHW/@@download/ENCFF405FHW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF482EVT bigBed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF656JQS 11015538 ENCODE Processing Pipeline 1a289a034374693a43411e8fa027f803 https://www.encodeproject.org/files/ENCFF482EVT/@@download/ENCFF482EVT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF830VPV bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW 445484778 ENCODE Processing Pipeline 596640125d3781869722dfe1facc09aa https://www.encodeproject.org/files/ENCFF830VPV/@@download/ENCFF830VPV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF328OWO bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW, ENCFF764KYI 513886937 ENCODE Processing Pipeline e7d01f3e00f2af8c8384da26afedee8c https://www.encodeproject.org/files/ENCFF328OWO/@@download/ENCFF328OWO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF116XIJ bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW, ENCFF764KYI 532337230 ENCODE Processing Pipeline 1691197304c8f26d6cc1a59f657d21e8 https://www.encodeproject.org/files/ENCFF116XIJ/@@download/ENCFF116XIJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF330LVI bed narrowPeak conservative idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF187LTW, ENCFF357LJN, ENCFF419RSJ, ENCFF656JQS 131732 ENCODE Processing Pipeline b1f71ec57a0c15c823ff4d9f025c59fe https://www.encodeproject.org/files/ENCFF330LVI/@@download/ENCFF330LVI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF549EWS bigWig signal p-value ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF450WED, ENCFF579QDW, ENCFF764KYI 407639253 ENCODE Processing Pipeline f5c2a3cb26f69109866de549c84d28f8 https://www.encodeproject.org/files/ENCFF549EWS/@@download/ENCFF549EWS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF431APC bigWig fold change over control ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF450WED, ENCFF579QDW, ENCFF764KYI 349384053 ENCODE Processing Pipeline 7db2acf585920873c2e0337b1edd1c13 https://www.encodeproject.org/files/ENCFF431APC/@@download/ENCFF431APC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF357LJN bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF411KDZ, ENCFF450WED, ENCFF579QDW 3990922 ENCODE Processing Pipeline 764c1b37896ad5925f2664f8c0a1efe7 https://www.encodeproject.org/files/ENCFF357LJN/@@download/ENCFF357LJN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF873DJD bed narrowPeak optimal idr thresholded peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF187LTW, ENCFF357LJN, ENCFF419RSJ, ENCFF656JQS 138348 ENCODE Processing Pipeline 9956439a5b1ebf7e4f2585542b722f80 https://www.encodeproject.org/files/ENCFF873DJD/@@download/ENCFF873DJD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000QZZ bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RAL 1445282075 Richard Myers, HAIB 5f4d39c136d76a2b03ab835fe2f9c21b https://www.encodeproject.org/files/ENCFF000QZZ/@@download/ENCFF000QZZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RAA bigBed broadPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UPR 87956 Richard Myers, HAIB 38110b1d9a5d93815118554c3f5c2fde https://www.encodeproject.org/files/ENCFF000RAA/@@download/ENCFF000RAA.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RAB bigBed broadPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UPS 483392 Richard Myers, HAIB 8fcfda817ba78ece79762293dd29ec1d https://www.encodeproject.org/files/ENCFF000RAB/@@download/ENCFF000RAB.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RAC bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RAO 2080170595 Richard Myers, HAIB a0e579bdc43899c595f965a821e8aec4 https://www.encodeproject.org/files/ENCFF000RAC/@@download/ENCFF000RAC.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RAD bigWig raw signal ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 11115475 Richard Myers, HAIB 83282304e62c8cb9e55baf067aa4ac5e https://www.encodeproject.org/files/ENCFF000RAD/@@download/ENCFF000RAD.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF000RAF bigWig raw signal ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 38033763 Richard Myers, HAIB b09d5f9524be2c90fe18cd108f62fdda https://www.encodeproject.org/files/ENCFF000RAF/@@download/ENCFF000RAF.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF000RAL fastq reads ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1184386272 Richard Myers, HAIB 6134de82b5005c3513880b25c76dfa43 https://www.encodeproject.org/files/ENCFF000RAL/@@download/ENCFF000RAL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RBV/ released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RAO fastq reads ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1600960648 Richard Myers, HAIB 7102c8eb701e11b08f1900ad0a27012b https://www.encodeproject.org/files/ENCFF000RAO/@@download/ENCFF000RAO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RBV/ released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF001UPR bed broadPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 24710 Richard Myers, HAIB 56d40f7efca785a2f2d998d3b15f523c https://www.encodeproject.org/files/ENCFF001UPR/@@download/ENCFF001UPR.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF001UPS bed broadPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 236985 Richard Myers, HAIB 968484794f6b9489ca85d898651d3d0b https://www.encodeproject.org/files/ENCFF001UPS/@@download/ENCFF001UPS.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF002CNJ bed narrowPeak optimal idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 358708 ENCODE Consortium Analysis Working Group 1049533d6b97f7574b73c5a0e67a3edf https://www.encodeproject.org/files/ENCFF002CNJ/@@download/ENCFF002CNJ.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF609TKL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNJ 661535 ENCODE Consortium 61972f29565947e018690c12dfa8440b https://www.encodeproject.org/files/ENCFF609TKL/@@download/ENCFF609TKL.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF765AGL bam unfiltered alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 32 ENCFF000RAL, ENCFF643CGH 1364515933 ENCODE Processing Pipeline 5a4df7c36befa9cdbf14fa7cee2090cd https://www.encodeproject.org/files/ENCFF765AGL/@@download/ENCFF765AGL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF347EJI bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 32 ENCFF000RAL, ENCFF643CGH 508140908 ENCODE Processing Pipeline 3dabed910ca20e140c3851d5b9a4eb0b https://www.encodeproject.org/files/ENCFF347EJI/@@download/ENCFF347EJI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF712XHP bam unfiltered alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 32 ENCFF000RAL, ENCFF807MUK 1362665401 ENCODE Processing Pipeline 165594495f91a37c37430a6f54dfd943 https://www.encodeproject.org/files/ENCFF712XHP/@@download/ENCFF712XHP.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF601DDB bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 32 ENCFF000RAL, ENCFF807MUK 508229958 ENCODE Processing Pipeline ab286c9960730e47690d2058088a2e57 https://www.encodeproject.org/files/ENCFF601DDB/@@download/ENCFF601DDB.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF991GDN bam unfiltered alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 32 ENCFF000RAO, ENCFF807MUK 1755365603 ENCODE Processing Pipeline bc13e9359d1a846efa3897da72af6469 https://www.encodeproject.org/files/ENCFF991GDN/@@download/ENCFF991GDN.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF523AMT bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 32 ENCFF000RAO, ENCFF643CGH 621339203 ENCODE Processing Pipeline 1f6fc82836df89e6da80382597cb6760 https://www.encodeproject.org/files/ENCFF523AMT/@@download/ENCFF523AMT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF950YAN bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 32 ENCFF000RAO, ENCFF807MUK 621556925 ENCODE Processing Pipeline 3b42e919890f8461add3c1720247a482 https://www.encodeproject.org/files/ENCFF950YAN/@@download/ENCFF950YAN.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF100IEA bam unfiltered alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 32 ENCFF000RAO, ENCFF643CGH 1758255811 ENCODE Processing Pipeline 556d85f56710ad93919483d3951ada55 https://www.encodeproject.org/files/ENCFF100IEA/@@download/ENCFF100IEA.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF770MYB bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154IKH, ENCFF347EJI 30955 ENCODE Processing Pipeline efae8fbb5652a8d9300c18144639a62c https://www.encodeproject.org/files/ENCFF770MYB/@@download/ENCFF770MYB.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF644XIO bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154IKH, ENCFF523AMT 1332138 ENCODE Processing Pipeline 35116c86ce81901722574f21be3c83ba https://www.encodeproject.org/files/ENCFF644XIO/@@download/ENCFF644XIO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF132RGF bigBed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF602BIH 10579640 ENCODE Processing Pipeline af042eeb9bc1bd8043ba16ff8e8fa9af https://www.encodeproject.org/files/ENCFF132RGF/@@download/ENCFF132RGF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF513JBS bigBed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF639APX 2735813 ENCODE Processing Pipeline e22ec933430e018246f87f96ccc7abab https://www.encodeproject.org/files/ENCFF513JBS/@@download/ENCFF513JBS.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF458KOT bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF410PKI, ENCFF601DDB, ENCFF950YAN 4820553 ENCODE Processing Pipeline c8e96fe29d6c959225a226ade0de4bc0 https://www.encodeproject.org/files/ENCFF458KOT/@@download/ENCFF458KOT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF153TZT bigBed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF644HHB 115042 ENCODE Processing Pipeline dc3fc9b58d5f170cb1f0edc19707285a https://www.encodeproject.org/files/ENCFF153TZT/@@download/ENCFF153TZT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF540XNF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF269ZSB 83713 ENCODE Processing Pipeline 49bb875365fabfda537488f08c796dfc https://www.encodeproject.org/files/ENCFF540XNF/@@download/ENCFF540XNF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF946MYA bed narrowPeak optimal idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF458KOT, ENCFF639APX, ENCFF644HHB 46236 ENCODE Processing Pipeline e416fd7813f52a1578336e19c89685f0 https://www.encodeproject.org/files/ENCFF946MYA/@@download/ENCFF946MYA.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF094DPC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF946MYA 123727 ENCODE Processing Pipeline d29d7a1b0e46367554f68de3996becdf https://www.encodeproject.org/files/ENCFF094DPC/@@download/ENCFF094DPC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF070ETF bigWig signal p-value ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154IKH, ENCFF523AMT 202078355 ENCODE Processing Pipeline 6383fecc449afa37cc0bd0609a85347b https://www.encodeproject.org/files/ENCFF070ETF/@@download/ENCFF070ETF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF855STS bigWig signal p-value ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154IKH, ENCFF347EJI, ENCFF523AMT 180073477 ENCODE Processing Pipeline 304fc1e56928326973469a92190afdc1 https://www.encodeproject.org/files/ENCFF855STS/@@download/ENCFF855STS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF222CHH bigWig fold change over control ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154IKH, ENCFF347EJI 182001053 ENCODE Processing Pipeline c3de01a3daf74a8f7be2ea08f0ba12e3 https://www.encodeproject.org/files/ENCFF222CHH/@@download/ENCFF222CHH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF268TSB bigWig fold change over control ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154IKH, ENCFF523AMT 208469559 ENCODE Processing Pipeline fb32bd8163ade1e90c7a8d3ef745d022 https://www.encodeproject.org/files/ENCFF268TSB/@@download/ENCFF268TSB.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF887KNE bigBed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF770MYB 115395 ENCODE Processing Pipeline d7cba14bee4bdc86b8b08bdf597b2744 https://www.encodeproject.org/files/ENCFF887KNE/@@download/ENCFF887KNE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF159XXN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF520MMO 83724 ENCODE Processing Pipeline 01cf27e5b4f032fb8e295a364314b3a5 https://www.encodeproject.org/files/ENCFF159XXN/@@download/ENCFF159XXN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF796YFZ bed narrowPeak optimal idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF602BIH, ENCFF644XIO, ENCFF770MYB 48086 ENCODE Processing Pipeline 204a6095ee98c7927665cea011d34b33 https://www.encodeproject.org/files/ENCFF796YFZ/@@download/ENCFF796YFZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF726ZAY bigWig signal p-value ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154IKH, ENCFF347EJI 199266497 ENCODE Processing Pipeline 13be0f1c980d174ff242488070a0e05e https://www.encodeproject.org/files/ENCFF726ZAY/@@download/ENCFF726ZAY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF955MCC bigWig fold change over control ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154IKH, ENCFF347EJI, ENCFF523AMT 347396322 ENCODE Processing Pipeline 71dd03f1eef87fb6cb707beafce1a6bc https://www.encodeproject.org/files/ENCFF955MCC/@@download/ENCFF955MCC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF602BIH bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154IKH, ENCFF347EJI, ENCFF523AMT 4817882 ENCODE Processing Pipeline cd658da627d7db2b52a26e572a853225 https://www.encodeproject.org/files/ENCFF602BIH/@@download/ENCFF602BIH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF896ZOK bigBed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF644XIO 2734361 ENCODE Processing Pipeline d9a2245d51308ce5391d4d6e3fbe3e8b https://www.encodeproject.org/files/ENCFF896ZOK/@@download/ENCFF896ZOK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF520MMO bed narrowPeak conservative idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF602BIH, ENCFF644XIO, ENCFF770MYB 17464 ENCODE Processing Pipeline 134493d28dfae921598d06bb0ed0a384 https://www.encodeproject.org/files/ENCFF520MMO/@@download/ENCFF520MMO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF670MPE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF796YFZ 126422 ENCODE Processing Pipeline 2dfe23776181ccff8399deea7ff77a7a https://www.encodeproject.org/files/ENCFF670MPE/@@download/ENCFF670MPE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF191USS bigWig signal p-value ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF410PKI, ENCFF601DDB 199273020 ENCODE Processing Pipeline 755c87cb3f22b8fc0393a4b1acdd4dd5 https://www.encodeproject.org/files/ENCFF191USS/@@download/ENCFF191USS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF506XLF bigBed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF458KOT 10580195 ENCODE Processing Pipeline 7e4c14b9092482933b8c8496b5dfdc11 https://www.encodeproject.org/files/ENCFF506XLF/@@download/ENCFF506XLF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF949OXS bigWig fold change over control ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF410PKI, ENCFF601DDB 181361868 ENCODE Processing Pipeline 41b878fc9680d03287e32fc487b499b1 https://www.encodeproject.org/files/ENCFF949OXS/@@download/ENCFF949OXS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF949JIZ bigWig fold change over control ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF410PKI, ENCFF601DDB, ENCFF950YAN 345249698 ENCODE Processing Pipeline ed37f9e453d5df6c2357494caa926655 https://www.encodeproject.org/files/ENCFF949JIZ/@@download/ENCFF949JIZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF445NNL bigWig signal p-value ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF410PKI, ENCFF950YAN 202152402 ENCODE Processing Pipeline 26cbc16bb4ffcf2ca67c17954566f658 https://www.encodeproject.org/files/ENCFF445NNL/@@download/ENCFF445NNL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF453YKQ bigWig signal p-value ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF410PKI, ENCFF601DDB, ENCFF950YAN 179228177 ENCODE Processing Pipeline 187b70752a5c1f0697cc6a17cda1e9bd https://www.encodeproject.org/files/ENCFF453YKQ/@@download/ENCFF453YKQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF996VAQ bigWig fold change over control ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF410PKI, ENCFF950YAN 208972219 ENCODE Processing Pipeline dbc0cdab715e95ed56a8d19049b3d5ba https://www.encodeproject.org/files/ENCFF996VAQ/@@download/ENCFF996VAQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF644HHB bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF410PKI, ENCFF601DDB 30829 ENCODE Processing Pipeline 1b27e74260cf0b9b43575bc68ebe9ba8 https://www.encodeproject.org/files/ENCFF644HHB/@@download/ENCFF644HHB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF639APX bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF410PKI, ENCFF950YAN 1333674 ENCODE Processing Pipeline 387e0af54d0a526e1bacee665d50a446 https://www.encodeproject.org/files/ENCFF639APX/@@download/ENCFF639APX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF269ZSB bed narrowPeak conservative idr thresholded peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF458KOT, ENCFF639APX, ENCFF644HHB 17535 ENCODE Processing Pipeline 35ec3a817849ef96dabf833b6eef7b01 https://www.encodeproject.org/files/ENCFF269ZSB/@@download/ENCFF269ZSB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WPO bam alignments ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WQC 500095747 Michael Snyder, Stanford 7ef12234c56b82a5f6586eb7ee1369dc https://www.encodeproject.org/files/ENCFF000WPO/@@download/ENCFF000WPO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPP bam alignments ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WQB 246251444 Michael Snyder, Stanford 6327997131aa9541a92747728b9d9c7a https://www.encodeproject.org/files/ENCFF000WPP/@@download/ENCFF000WPP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPR bigBed narrowPeak peaks ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGL 487271 Michael Snyder, Stanford 22b0781692dd1b1e30e690942b954e2d https://www.encodeproject.org/files/ENCFF000WPR/@@download/ENCFF000WPR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPS bam alignments ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WQD 998335582 Michael Snyder, Stanford fe4b23e6b4d23b2512f768fe8ac2dc1f https://www.encodeproject.org/files/ENCFF000WPS/@@download/ENCFF000WPS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPU bigWig signal ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 490020290 Michael Snyder, Stanford c6177c4e859337edf383f051ab76d6c3 https://www.encodeproject.org/files/ENCFF000WPU/@@download/ENCFF000WPU.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WQB fastq reads ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 191298363 Michael Snyder, Stanford d1bf01bbd66417859bd1eb9466f2fb3c https://www.encodeproject.org/files/ENCFF000WQB/@@download/ENCFF000WQB.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WQC fastq reads ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 385734254 Michael Snyder, Stanford 86cbd89304918bc63a43409003a5ea3c https://www.encodeproject.org/files/ENCFF000WQC/@@download/ENCFF000WQC.fastq.gz Illumina Genome Analyzer /files/ENCFF000WPT/ released biological replicates with identical biosample insufficient read length ENCFF000WQD fastq reads ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 739860556 Michael Snyder, Stanford 24a1ac37415fd9234382ae6fba6c22bf https://www.encodeproject.org/files/ENCFF000WQD/@@download/ENCFF000WQD.fastq.gz Illumina Genome Analyzer /files/ENCFF000WPV/ released biological replicates with identical biosample insufficient read length ENCFF001VGL bed narrowPeak peaks ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 169336 Michael Snyder, Stanford 86b8d87af4ab5e680d0db0b7ac6ba03b https://www.encodeproject.org/files/ENCFF001VGL/@@download/ENCFF001VGL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CQN bed narrowPeak optimal idr thresholded peaks ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 132471 ENCODE Consortium Analysis Working Group d83a56196c352fed47578071ddf43b40 https://www.encodeproject.org/files/ENCFF002CQN/@@download/ENCFF002CQN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF189FYN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQN 369909 ENCODE Consortium de2e5cff90d2b7fce011c444f8bc9066 https://www.encodeproject.org/files/ENCFF189FYN/@@download/ENCFF189FYN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF517STJ fastq reads ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF175BPL 3095294771 Michael Snyder, Stanford e68c66cd47cc0daa78a1b96ba4934117 SRA:SRR6213871 https://www.encodeproject.org/files/ENCFF517STJ/@@download/ENCFF517STJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF281DBS fastq reads ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF509BWO 2891996826 Michael Snyder, Stanford 3bea8e10d9c2556a39a91007ca99b486 SRA:SRR6213872 https://www.encodeproject.org/files/ENCFF281DBS/@@download/ENCFF281DBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF175BPL fastq reads ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF517STJ 3077354423 Michael Snyder, Stanford 408899d2e748306e4e4d3dfecf20364f SRA:SRR6213871 https://www.encodeproject.org/files/ENCFF175BPL/@@download/ENCFF175BPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF509BWO fastq reads ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF281DBS 2871955092 Michael Snyder, Stanford 5ee2a09b7c7c3f13826c9d2ccf8b4939 SRA:SRR6213872 https://www.encodeproject.org/files/ENCFF509BWO/@@download/ENCFF509BWO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF816DGV bam unfiltered alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF175BPL, ENCFF517STJ, ENCFF643CGH 6748220784 ENCODE Processing Pipeline d218445e12e3bee249ffb2e04d963933 https://www.encodeproject.org/files/ENCFF816DGV/@@download/ENCFF816DGV.bam GRCh38 released ENCFF952RLL bam unfiltered alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF281DBS, ENCFF509BWO, ENCFF643CGH 6206611635 ENCODE Processing Pipeline 361f6a882f4afc0c822eb338f50773a0 https://www.encodeproject.org/files/ENCFF952RLL/@@download/ENCFF952RLL.bam GRCh38 released ENCFF106HDQ bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF175BPL, ENCFF517STJ, ENCFF643CGH 5799361833 ENCODE Processing Pipeline 21c7c83c60482da016d8509d30819e64 https://www.encodeproject.org/files/ENCFF106HDQ/@@download/ENCFF106HDQ.bam GRCh38 released ENCFF078ZTO bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF281DBS, ENCFF509BWO, ENCFF643CGH 5083747638 ENCODE Processing Pipeline a42d16cd7a0261eda0c91592a4d5119a https://www.encodeproject.org/files/ENCFF078ZTO/@@download/ENCFF078ZTO.bam GRCh38 released ENCFF073HNP bigWig signal p-value ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF078ZTO, ENCFF426RDP 1142750914 ENCODE Processing Pipeline 482f2b44cded0119456918734bddf854 https://www.encodeproject.org/files/ENCFF073HNP/@@download/ENCFF073HNP.bigWig GRCh38 released ENCFF824XTV bigWig signal p-value ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF106HDQ, ENCFF291AFY 1224103518 ENCODE Processing Pipeline 6d422bb483dc77c19fdc6c9e0257720d https://www.encodeproject.org/files/ENCFF824XTV/@@download/ENCFF824XTV.bigWig GRCh38 released ENCFF108OFD bigWig signal p-value ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF078ZTO, ENCFF106HDQ, ENCFF291AFY, ENCFF426RDP 1829768055 ENCODE Processing Pipeline de86400f410969a41e11fc48781c35c7 https://www.encodeproject.org/files/ENCFF108OFD/@@download/ENCFF108OFD.bigWig GRCh38 released ENCFF136WWF bigWig fold change over control ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF078ZTO, ENCFF426RDP 1100343308 ENCODE Processing Pipeline 0f47b19d6a00036c2d21e61271c3d872 https://www.encodeproject.org/files/ENCFF136WWF/@@download/ENCFF136WWF.bigWig GRCh38 released ENCFF224CLT bigWig fold change over control ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF106HDQ, ENCFF291AFY 1287311375 ENCODE Processing Pipeline 785773b46edd27584917d89b37eb6eb8 https://www.encodeproject.org/files/ENCFF224CLT/@@download/ENCFF224CLT.bigWig GRCh38 released ENCFF084MGE bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF078ZTO, ENCFF426RDP 5664891 ENCODE Processing Pipeline 3e1db2d5826b56d37fba3e564d5edcf8 https://www.encodeproject.org/files/ENCFF084MGE/@@download/ENCFF084MGE.bed.gz GRCh38 released ENCFF626VZY bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF106HDQ, ENCFF291AFY 6238839 ENCODE Processing Pipeline 3c8f63e35c9aa72d34c5fff372b649fc https://www.encodeproject.org/files/ENCFF626VZY/@@download/ENCFF626VZY.bed.gz GRCh38 released ENCFF501TCR bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF078ZTO, ENCFF106HDQ, ENCFF291AFY, ENCFF426RDP 7079084 ENCODE Processing Pipeline 5c624ea1660b201791b2880a5da6c3dd https://www.encodeproject.org/files/ENCFF501TCR/@@download/ENCFF501TCR.bed.gz GRCh38 released ENCFF931XKU bigBed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF626VZY 11178236 ENCODE Processing Pipeline 0f2ad7e3485887b91037766816199783 https://www.encodeproject.org/files/ENCFF931XKU/@@download/ENCFF931XKU.bigBed GRCh38 released ENCFF823BVD bigBed narrowPeak conservative idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF154YAG 245156 ENCODE Processing Pipeline d9ddba3317d9f8594ee3134caa767f81 https://www.encodeproject.org/files/ENCFF823BVD/@@download/ENCFF823BVD.bigBed GRCh38 released ENCFF075GGX bigBed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF084MGE 11426834 ENCODE Processing Pipeline cb665e4546daf6a6cce589168d1b17e8 https://www.encodeproject.org/files/ENCFF075GGX/@@download/ENCFF075GGX.bigBed GRCh38 released ENCFF037GNR bigBed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF501TCR 11251463 ENCODE Processing Pipeline 7b8188727af1cd17a24180f01d8612ae https://www.encodeproject.org/files/ENCFF037GNR/@@download/ENCFF037GNR.bigBed GRCh38 released ENCFF154YAG bed narrowPeak conservative idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF084MGE, ENCFF419RSJ, ENCFF501TCR, ENCFF626VZY 91986 ENCODE Processing Pipeline 2f0b9598331d9a5e125e3ab7ae10e9e5 https://www.encodeproject.org/files/ENCFF154YAG/@@download/ENCFF154YAG.bed.gz GRCh38 released ENCFF320TAN bed narrowPeak optimal idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF084MGE, ENCFF419RSJ, ENCFF501TCR, ENCFF626VZY 152915 ENCODE Processing Pipeline c873d030437550f8cf66f951be6ea249 https://www.encodeproject.org/files/ENCFF320TAN/@@download/ENCFF320TAN.bed.gz GRCh38 released ENCFF299GQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF320TAN 342661 ENCODE Processing Pipeline 1b733431a5e7437b3ab20b438f57569f https://www.encodeproject.org/files/ENCFF299GQJ/@@download/ENCFF299GQJ.bigBed GRCh38 released ENCFF443GIH bigWig fold change over control ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF078ZTO, ENCFF106HDQ, ENCFF291AFY, ENCFF426RDP 2136607402 ENCODE Processing Pipeline 8ed100288ec3c1254126c4a95402a997 https://www.encodeproject.org/files/ENCFF443GIH/@@download/ENCFF443GIH.bigWig GRCh38 released ENCFF365PMY bam unfiltered alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF175BPL, ENCFF517STJ, ENCFF807MUK 6735263495 ENCODE Processing Pipeline d31ceaecd30dc7b6e68abee90d8cc356 https://www.encodeproject.org/files/ENCFF365PMY/@@download/ENCFF365PMY.bam hg19 released ENCFF905EDA bam unfiltered alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF281DBS, ENCFF509BWO, ENCFF807MUK 6196043181 ENCODE Processing Pipeline 7e0619216dfae5dfe5815d88f11e334c https://www.encodeproject.org/files/ENCFF905EDA/@@download/ENCFF905EDA.bam hg19 released ENCFF976AUQ bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF175BPL, ENCFF517STJ, ENCFF807MUK 5790748370 ENCODE Processing Pipeline dff5e4b18738aa5d6429baf430308ed9 https://www.encodeproject.org/files/ENCFF976AUQ/@@download/ENCFF976AUQ.bam hg19 released ENCFF722BQX bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF281DBS, ENCFF509BWO, ENCFF807MUK 5078343239 ENCODE Processing Pipeline d6c55a1786b9733df62902318a9d5a2e https://www.encodeproject.org/files/ENCFF722BQX/@@download/ENCFF722BQX.bam hg19 released ENCFF756MQT bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF722BQX, ENCFF976AUQ 7055672 ENCODE Processing Pipeline 455a57ff9ddb0b1a02f57002a2fcd71e https://www.encodeproject.org/files/ENCFF756MQT/@@download/ENCFF756MQT.bed.gz hg19 released ENCFF264BUT bigWig signal p-value ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF722BQX, ENCFF976AUQ 2155327928 ENCODE Processing Pipeline e253f52c280e023074d8bdf80428e702 https://www.encodeproject.org/files/ENCFF264BUT/@@download/ENCFF264BUT.bigWig hg19 released ENCFF465OUI bigWig fold change over control ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF583FAG, ENCFF722BQX 1094919646 ENCODE Processing Pipeline 606dbd969a5cd57888684397e97636d9 https://www.encodeproject.org/files/ENCFF465OUI/@@download/ENCFF465OUI.bigWig hg19 released ENCFF341FYC bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF583FAG, ENCFF722BQX 5762708 ENCODE Processing Pipeline 9521a34fc5e029bc807b93e3ce8e5133 https://www.encodeproject.org/files/ENCFF341FYC/@@download/ENCFF341FYC.bed.gz hg19 released ENCFF897KUN bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF976AUQ 6231940 ENCODE Processing Pipeline c0160fe73d3a7d2060e4381c6338fdc5 https://www.encodeproject.org/files/ENCFF897KUN/@@download/ENCFF897KUN.bed.gz hg19 released ENCFF536PXB bigWig signal p-value ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF583FAG, ENCFF722BQX 1226697251 ENCODE Processing Pipeline 1189acdb4965c65001ab2e62a72e6dee https://www.encodeproject.org/files/ENCFF536PXB/@@download/ENCFF536PXB.bigWig hg19 released ENCFF750WPG bigWig signal p-value ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF976AUQ 1206273131 ENCODE Processing Pipeline 86620d0675da3bd0bf8107e294aac9a4 https://www.encodeproject.org/files/ENCFF750WPG/@@download/ENCFF750WPG.bigWig hg19 released ENCFF616WKT bigWig fold change over control ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF976AUQ 1277654710 ENCODE Processing Pipeline b222f42be0a1c47937657834760c2339 https://www.encodeproject.org/files/ENCFF616WKT/@@download/ENCFF616WKT.bigWig hg19 released ENCFF238AVA bigBed narrowPeak conservative idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF186BSD 236175 ENCODE Processing Pipeline a7d54535ab086baee9ad7a4077ef61c0 https://www.encodeproject.org/files/ENCFF238AVA/@@download/ENCFF238AVA.bigBed hg19 released ENCFF117ZKS bed narrowPeak optimal idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF341FYC, ENCFF756MQT, ENCFF897KUN 149092 ENCODE Processing Pipeline 17f89852d9c1f1ff572e217fe5068a26 https://www.encodeproject.org/files/ENCFF117ZKS/@@download/ENCFF117ZKS.bed.gz hg19 released ENCFF380MJA bigWig fold change over control ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF722BQX, ENCFF976AUQ 2127699845 ENCODE Processing Pipeline dc882960daa538c017fd5a0de7528db5 https://www.encodeproject.org/files/ENCFF380MJA/@@download/ENCFF380MJA.bigWig hg19 released ENCFF428ZTT bigBed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF341FYC 11411299 ENCODE Processing Pipeline 77c3d872f004e1141d27e710e096dda1 https://www.encodeproject.org/files/ENCFF428ZTT/@@download/ENCFF428ZTT.bigBed hg19 released ENCFF911FBN bigBed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF756MQT 11225739 ENCODE Processing Pipeline 586065e01c580ad11e903b29dff45ecc https://www.encodeproject.org/files/ENCFF911FBN/@@download/ENCFF911FBN.bigBed hg19 released ENCFF186BSD bed narrowPeak conservative idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF341FYC, ENCFF756MQT, ENCFF897KUN 86541 ENCODE Processing Pipeline 52345550074203d92e08d118d44e5d9e https://www.encodeproject.org/files/ENCFF186BSD/@@download/ENCFF186BSD.bed.gz hg19 released ENCFF045PPL bigBed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF897KUN 11159009 ENCODE Processing Pipeline 026c70647b19294ec36349fb2f3a37c6 https://www.encodeproject.org/files/ENCFF045PPL/@@download/ENCFF045PPL.bigBed hg19 released ENCFF902FFN bigBed narrowPeak optimal idr thresholded peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF117ZKS 335910 ENCODE Processing Pipeline 7853b93560e1222c34f3e60ecb1020e9 https://www.encodeproject.org/files/ENCFF902FFN/@@download/ENCFF902FFN.bigBed hg19 released ENCFF013EUB bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF807MUK 4796408917 ENCODE Processing Pipeline 9874606c19192117774c4ceb0ce184ef https://www.encodeproject.org/files/ENCFF013EUB/@@download/ENCFF013EUB.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF410XYU fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF509XFH 2816738853 Michael Snyder, Stanford 168131b75c2e5a1b9e77fe9968cb16e3 SRA:SRR6213088 https://www.encodeproject.org/files/ENCFF410XYU/@@download/ENCFF410XYU.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF509XFH fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF410XYU 3009802033 Michael Snyder, Stanford fa2f5f3daeef95d1eeccdd60e36ebfce SRA:SRR6213088 https://www.encodeproject.org/files/ENCFF509XFH/@@download/ENCFF509XFH.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF294ZQW fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF110RBD 2362481885 Michael Snyder, Stanford 62d399163599c249a6b2aa4ae0108d90 SRA:SRR6213087 https://www.encodeproject.org/files/ENCFF294ZQW/@@download/ENCFF294ZQW.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF110RBD fastq reads ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF294ZQW 2825906258 Michael Snyder, Stanford 898170160be0141ffca7b961dc8bd2d2 SRA:SRR6213087 https://www.encodeproject.org/files/ENCFF110RBD/@@download/ENCFF110RBD.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF914YJM bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF807MUK 3003262429 ENCODE Processing Pipeline 80f26fa3c0a2025eeb9b7345d8673b78 https://www.encodeproject.org/files/ENCFF914YJM/@@download/ENCFF914YJM.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF350ULX bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF643CGH 2968143377 ENCODE Processing Pipeline fa2eb3b3f27967bc83850ee918876afe https://www.encodeproject.org/files/ENCFF350ULX/@@download/ENCFF350ULX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF828HRI bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF643CGH 4799935975 ENCODE Processing Pipeline 6677aeab4738c2c31d864caef8a676fa https://www.encodeproject.org/files/ENCFF828HRI/@@download/ENCFF828HRI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF685TVP bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF807MUK 5267487325 ENCODE Processing Pipeline 700c903ff2a7ee2f10868e5605525e0d https://www.encodeproject.org/files/ENCFF685TVP/@@download/ENCFF685TVP.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF806TCI bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF643CGH 3007029896 ENCODE Processing Pipeline 7ba27f46116865533570fb393099ac57 https://www.encodeproject.org/files/ENCFF806TCI/@@download/ENCFF806TCI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF104CQY bam unfiltered alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF643CGH 5268327799 ENCODE Processing Pipeline c231aad1670b44b3e3e9076a63b9a4ee https://www.encodeproject.org/files/ENCFF104CQY/@@download/ENCFF104CQY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF256QZV bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF806TCI 952306215 ENCODE Processing Pipeline 64c4c95b9108aae2485379c06932cee4 https://www.encodeproject.org/files/ENCFF256QZV/@@download/ENCFF256QZV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF109ASL bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF806TCI 1014314242 ENCODE Processing Pipeline b8725477016499df09c0801938d44806 https://www.encodeproject.org/files/ENCFF109ASL/@@download/ENCFF109ASL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF456RPI bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF350ULX 994203219 ENCODE Processing Pipeline 62f1f262c53f0d4147e1b3135ac8717c https://www.encodeproject.org/files/ENCFF456RPI/@@download/ENCFF456RPI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF167ANV bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF350ULX, ENCFF666ATR, ENCFF806TCI 2062988735 ENCODE Processing Pipeline 33203bd499814943b0fed53f51b4fc98 https://www.encodeproject.org/files/ENCFF167ANV/@@download/ENCFF167ANV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF936ZRU bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF350ULX 1034010789 ENCODE Processing Pipeline 8e58acdabd42232c0227ed67cf0ec545 https://www.encodeproject.org/files/ENCFF936ZRU/@@download/ENCFF936ZRU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF052YOW bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF350ULX, ENCFF666ATR, ENCFF806TCI 1992098935 ENCODE Processing Pipeline 73380d49a41e69ad416f42f75d39240b https://www.encodeproject.org/files/ENCFF052YOW/@@download/ENCFF052YOW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF614KCL bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF806TCI 5437429 ENCODE Processing Pipeline 9758508711792d4c9dd5b69ed5a2f378 https://www.encodeproject.org/files/ENCFF614KCL/@@download/ENCFF614KCL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF157QCB bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF350ULX 5394009 ENCODE Processing Pipeline d20b9ce3aff36a0b93b6f3e99bc6f124 https://www.encodeproject.org/files/ENCFF157QCB/@@download/ENCFF157QCB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF941NEK bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF350ULX, ENCFF666ATR, ENCFF806TCI 6680249 ENCODE Processing Pipeline c0f9c11d693cda52d8aac2cdfad5db4e https://www.encodeproject.org/files/ENCFF941NEK/@@download/ENCFF941NEK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF757FZE bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF614KCL 11517095 ENCODE Processing Pipeline 5381fc5ac53af28ed1dfd6b3f0aabf4e https://www.encodeproject.org/files/ENCFF757FZE/@@download/ENCFF757FZE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF588RJS bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF157QCB 11270948 ENCODE Processing Pipeline 203c14a83262f03f27dfba7089ef1ef0 https://www.encodeproject.org/files/ENCFF588RJS/@@download/ENCFF588RJS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF313SSW bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF941NEK 11478469 ENCODE Processing Pipeline 00765b27bb6f7d2803e4db85199ff26f https://www.encodeproject.org/files/ENCFF313SSW/@@download/ENCFF313SSW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF282AHI bed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF157QCB, ENCFF419RSJ, ENCFF614KCL, ENCFF941NEK 82308 ENCODE Processing Pipeline d41684bd7935605e290012822e96b35b https://www.encodeproject.org/files/ENCFF282AHI/@@download/ENCFF282AHI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF831OHY bigBed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF282AHI 190213 ENCODE Processing Pipeline b13447a0d7066ca8489016f7d309a184 https://www.encodeproject.org/files/ENCFF831OHY/@@download/ENCFF831OHY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF214NJL bed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF157QCB, ENCFF419RSJ, ENCFF614KCL, ENCFF941NEK 142305 ENCODE Processing Pipeline 19d392bca5367cf648e2045dda900e83 https://www.encodeproject.org/files/ENCFF214NJL/@@download/ENCFF214NJL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF661DYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF214NJL 324132 ENCODE Processing Pipeline 1a1aa3b48b6cdfbd72f3600d6649aa83 https://www.encodeproject.org/files/ENCFF661DYQ/@@download/ENCFF661DYQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF987UCV bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF807MUK 2964389146 ENCODE Processing Pipeline a57039b59b37af2b0430bf13bc00252e https://www.encodeproject.org/files/ENCFF987UCV/@@download/ENCFF987UCV.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF796JRN bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 1050022733 ENCODE Processing Pipeline e34c11df2c8879201ead66c62ed2e57d https://www.encodeproject.org/files/ENCFF796JRN/@@download/ENCFF796JRN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF335TSD bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF914YJM, ENCFF987UCV 1958320363 ENCODE Processing Pipeline 2616ab9f33f4e9ccf80b4245751ccb1d https://www.encodeproject.org/files/ENCFF335TSD/@@download/ENCFF335TSD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF003TOD bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 5394737 ENCODE Processing Pipeline e51539b0a46991b9c84fffe5205f9087 https://www.encodeproject.org/files/ENCFF003TOD/@@download/ENCFF003TOD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF106XTS bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF003TOD 11253010 ENCODE Processing Pipeline 560cfb6bbecbef68acf9163dc7d2a780 https://www.encodeproject.org/files/ENCFF106XTS/@@download/ENCFF106XTS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF670DVM bigBed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF567ENM 186289 ENCODE Processing Pipeline e3c39b5a27c3c6d81e2ca1d16c94c170 https://www.encodeproject.org/files/ENCFF670DVM/@@download/ENCFF670DVM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF708SLW bigBed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF455HXN 321121 ENCODE Processing Pipeline 276ad025e2b9e7c98141724a4126ffc0 https://www.encodeproject.org/files/ENCFF708SLW/@@download/ENCFF708SLW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF413XZW bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 1012772338 ENCODE Processing Pipeline d537fcf3996c74a21c7cf39925fc8369 https://www.encodeproject.org/files/ENCFF413XZW/@@download/ENCFF413XZW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF964JLQ bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF914YJM, ENCFF987UCV 1995027668 ENCODE Processing Pipeline babe269228e2a02946ddbf460355cfff https://www.encodeproject.org/files/ENCFF964JLQ/@@download/ENCFF964JLQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF567ENM bed narrowPeak conservative idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF003TOD, ENCFF306UPG, ENCFF781FBO 80743 ENCODE Processing Pipeline 657da28f6dbcdcd492a96e42b7d56f0b https://www.encodeproject.org/files/ENCFF567ENM/@@download/ENCFF567ENM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF551QSO bigWig signal p-value ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 931424666 ENCODE Processing Pipeline b098933b30d28a210e4f08be6a631782 https://www.encodeproject.org/files/ENCFF551QSO/@@download/ENCFF551QSO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF455HXN bed narrowPeak optimal idr thresholded peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF003TOD, ENCFF306UPG, ENCFF781FBO 142613 ENCODE Processing Pipeline 9e9e89c3678bd6eabbfa0df644c7f166 https://www.encodeproject.org/files/ENCFF455HXN/@@download/ENCFF455HXN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF980XWO bigWig fold change over control ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 1031689760 ENCODE Processing Pipeline 87f022bed1d49df86b577b24478e1c4d https://www.encodeproject.org/files/ENCFF980XWO/@@download/ENCFF980XWO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF306UPG bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 5433941 ENCODE Processing Pipeline f5b014bec09dab11dd8a15a8a7feade2 https://www.encodeproject.org/files/ENCFF306UPG/@@download/ENCFF306UPG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF781FBO bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF914YJM, ENCFF987UCV 6672379 ENCODE Processing Pipeline 6bdf4560e3c00c381847f44dff79af31 https://www.encodeproject.org/files/ENCFF781FBO/@@download/ENCFF781FBO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF046MYG bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF306UPG 11503438 ENCODE Processing Pipeline 3e468a9fb18ebafa36d4c9ae941897d4 https://www.encodeproject.org/files/ENCFF046MYG/@@download/ENCFF046MYG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF955OFB bigBed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF781FBO 11462552 ENCODE Processing Pipeline 3ed18879909468f4d31aa1fb21e97323 https://www.encodeproject.org/files/ENCFF955OFB/@@download/ENCFF955OFB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF181HOT fastq reads ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF571EFT 2589510824 Michael Snyder, Stanford 06b19406bd402f5057cc4b710e75396a SRA:SRR6213598 https://www.encodeproject.org/files/ENCFF181HOT/@@download/ENCFF181HOT.fastq.gz Illumina HiSeq 4000 /files/ENCFF040RNV/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF571EFT fastq reads ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF181HOT 2260857741 Michael Snyder, Stanford df03c1f3a78c173260bf0b9e43c88a9d SRA:SRR6213598 https://www.encodeproject.org/files/ENCFF571EFT/@@download/ENCFF571EFT.fastq.gz Illumina HiSeq 4000 /files/ENCFF508LJJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF058IMO bam alignments ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF181HOT, ENCFF571EFT, ENCFF643CGH 3643447141 ENCODE Processing Pipeline 75a9dcf2207bfd2f3392253a576e0fc0 https://www.encodeproject.org/files/ENCFF058IMO/@@download/ENCFF058IMO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF974PFJ bam unfiltered alignments ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF181HOT, ENCFF571EFT, ENCFF643CGH 4804147557 ENCODE Processing Pipeline 1689ae89d4c72f7b1167affd6af5a88f https://www.encodeproject.org/files/ENCFF974PFJ/@@download/ENCFF974PFJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF946JKA bam unfiltered alignments ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF181HOT, ENCFF571EFT, ENCFF807MUK 4796434401 ENCODE Processing Pipeline ad6541dcb2e2b7e62dcad9eb581eea5e https://www.encodeproject.org/files/ENCFF946JKA/@@download/ENCFF946JKA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF096CSL bam alignments ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF181HOT, ENCFF571EFT, ENCFF807MUK 3640244715 ENCODE Processing Pipeline 9c5d3e0cd70cccc183977a3a8877327e https://www.encodeproject.org/files/ENCFF096CSL/@@download/ENCFF096CSL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF368CZJ bigWig signal p-value ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF049CMN, ENCFF096CSL 1121079563 ENCODE Processing Pipeline 0acfbbda9bf6b1e4ee2f404b575bbf95 https://www.encodeproject.org/files/ENCFF368CZJ/@@download/ENCFF368CZJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF489YJP bigWig signal p-value ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF058IMO, ENCFF217IBH 1145964152 ENCODE Processing Pipeline 416972fc4e845d54182734dd519ced2c https://www.encodeproject.org/files/ENCFF489YJP/@@download/ENCFF489YJP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF534GRR bigWig fold change over control ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF058IMO, ENCFF217IBH 1135448704 ENCODE Processing Pipeline a85f68d2c218d703f495cf04d67c7286 https://www.encodeproject.org/files/ENCFF534GRR/@@download/ENCFF534GRR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF039AUA bed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF058IMO, ENCFF217IBH 5495943 ENCODE Processing Pipeline 2e9d24124bd7f0dc7716b13df9dc62b5 https://www.encodeproject.org/files/ENCFF039AUA/@@download/ENCFF039AUA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF917CFR bigBed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF039AUA 11818666 ENCODE Processing Pipeline 5ce7dcdbdb47881faa6483eeb968bc6a https://www.encodeproject.org/files/ENCFF917CFR/@@download/ENCFF917CFR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF859AOY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF072UWP 742977 ENCODE Processing Pipeline dab57746133ddcae919b6300a0814e31 https://www.encodeproject.org/files/ENCFF859AOY/@@download/ENCFF859AOY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF072UWP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF039AUA, ENCFF419RSJ 390572 ENCODE Processing Pipeline d0ca9da6eb9a87268bb5fc89296303b7 https://www.encodeproject.org/files/ENCFF072UWP/@@download/ENCFF072UWP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF706BTR bigWig fold change over control ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF049CMN, ENCFF096CSL 1134408190 ENCODE Processing Pipeline 86301cbf33217eb5ecd01406f01197c8 https://www.encodeproject.org/files/ENCFF706BTR/@@download/ENCFF706BTR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF320GJE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF393OKG 367758 ENCODE Processing Pipeline ab73357d00bd333a22170eb0cc48ccfe https://www.encodeproject.org/files/ENCFF320GJE/@@download/ENCFF320GJE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF393OKG bed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF049CMN, ENCFF096CSL 5438993 ENCODE Processing Pipeline fa81190887745a37f19c8594ee9faf54 https://www.encodeproject.org/files/ENCFF393OKG/@@download/ENCFF393OKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF349PQM bigBed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF393OKG 11734780 ENCODE Processing Pipeline 5901b091d04317db11922b717ccfc408 https://www.encodeproject.org/files/ENCFF349PQM/@@download/ENCFF349PQM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF130HBC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF320GJE 711730 ENCODE Processing Pipeline cdfd8542c20004bae0991d095689ae4a https://www.encodeproject.org/files/ENCFF130HBC/@@download/ENCFF130HBC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF624PFM fastq reads ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 1 ENCFF592ZFR 1815815620 Richard Myers, HAIB a34c22f3c645adfd5b676dadb38520ed SRA:SRR6212656 https://www.encodeproject.org/files/ENCFF624PFM/@@download/ENCFF624PFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF424UYB/ released antibody characterized with exemption ENCFF592ZFR fastq reads ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 2 ENCFF624PFM 1893644876 Richard Myers, HAIB 36318412de56e9f44cf8efb5d1bd893d SRA:SRR6212656 https://www.encodeproject.org/files/ENCFF592ZFR/@@download/ENCFF592ZFR.fastq.gz Illumina HiSeq 2000 /files/ENCFF550VPF/ released antibody characterized with exemption ENCFF850LVP bam unfiltered alignments ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF592ZFR, ENCFF624PFM, ENCFF807MUK 4226042732 ENCODE Processing Pipeline 31d32370130b6cd3d422a6b1f394d6c6 https://www.encodeproject.org/files/ENCFF850LVP/@@download/ENCFF850LVP.bam hg19 released antibody characterized with exemption ENCFF580KMP bam alignments ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF592ZFR, ENCFF624PFM, ENCFF643CGH 2869951323 ENCODE Processing Pipeline 0818a4819f1d119f542d3ec44da123c6 https://www.encodeproject.org/files/ENCFF580KMP/@@download/ENCFF580KMP.bam GRCh38 released antibody characterized with exemption ENCFF168QCE bam unfiltered alignments ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF592ZFR, ENCFF624PFM, ENCFF643CGH 4234508163 ENCODE Processing Pipeline ef7c19c76d33d953c310faa74f255d2b https://www.encodeproject.org/files/ENCFF168QCE/@@download/ENCFF168QCE.bam GRCh38 released antibody characterized with exemption ENCFF987QGM bam alignments ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF592ZFR, ENCFF624PFM, ENCFF807MUK 2870628477 ENCODE Processing Pipeline 8245bb3f0f744738eedaf1211de1e048 https://www.encodeproject.org/files/ENCFF987QGM/@@download/ENCFF987QGM.bam hg19 released antibody characterized with exemption ENCFF225KQB bigWig fold change over control ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF238HZC, ENCFF580KMP 931104281 ENCODE Processing Pipeline e5aa0238991f3a152cf55ebd94912f5c https://www.encodeproject.org/files/ENCFF225KQB/@@download/ENCFF225KQB.bigWig GRCh38 released antibody characterized with exemption ENCFF654KMQ bigWig signal p-value ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF724YUP, ENCFF987QGM 1200159954 ENCODE Processing Pipeline 13b5777f521b45ad2faf6ae4f0d3c020 https://www.encodeproject.org/files/ENCFF654KMQ/@@download/ENCFF654KMQ.bigWig hg19 released antibody characterized with exemption ENCFF459RLW bigBed narrowPeak peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF276DMI 13397130 ENCODE Processing Pipeline a7d474e90197553896df4394fb305d40 https://www.encodeproject.org/files/ENCFF459RLW/@@download/ENCFF459RLW.bigBed hg19 released antibody characterized with exemption ENCFF339JZT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF724RDJ 2321775 ENCODE Processing Pipeline 17e9feb31f03926f67a677a97abaceff https://www.encodeproject.org/files/ENCFF339JZT/@@download/ENCFF339JZT.bigBed hg19 released antibody characterized with exemption ENCFF032NNR bigWig signal p-value ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF238HZC, ENCFF580KMP 1121894451 ENCODE Processing Pipeline 0f4876a1a3efdc9169b5f6820cea747d https://www.encodeproject.org/files/ENCFF032NNR/@@download/ENCFF032NNR.bigWig GRCh38 released antibody characterized with exemption ENCFF280LUO bed narrowPeak peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF238HZC, ENCFF580KMP 6853739 ENCODE Processing Pipeline c6d0bac265f9d2f533200f231f985720 https://www.encodeproject.org/files/ENCFF280LUO/@@download/ENCFF280LUO.bed.gz GRCh38 released antibody characterized with exemption ENCFF755JEJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF280LUO, ENCFF419RSJ 1233664 ENCODE Processing Pipeline 8e520d5b3f40f65c004dade1e645deda https://www.encodeproject.org/files/ENCFF755JEJ/@@download/ENCFF755JEJ.bed.gz GRCh38 released antibody characterized with exemption ENCFF934GFA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF755JEJ 2267310 ENCODE Processing Pipeline 9056264be464a475fd58828de9f080cf https://www.encodeproject.org/files/ENCFF934GFA/@@download/ENCFF934GFA.bigBed GRCh38 released antibody characterized with exemption ENCFF142CQJ bigWig fold change over control ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF724YUP, ENCFF987QGM 916173764 ENCODE Processing Pipeline 08e0a29322be523f933064f24c2d6477 https://www.encodeproject.org/files/ENCFF142CQJ/@@download/ENCFF142CQJ.bigWig hg19 released antibody characterized with exemption ENCFF935BOX bigBed narrowPeak peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF280LUO 13302394 ENCODE Processing Pipeline 66b91be441ffc81a3ab5b8321b0d8178 https://www.encodeproject.org/files/ENCFF935BOX/@@download/ENCFF935BOX.bigBed GRCh38 released antibody characterized with exemption ENCFF276DMI bed narrowPeak peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF724YUP, ENCFF987QGM 6934582 ENCODE Processing Pipeline f84191bdeeaecf50608c8cd038ef23d2 https://www.encodeproject.org/files/ENCFF276DMI/@@download/ENCFF276DMI.bed.gz hg19 released antibody characterized with exemption ENCFF724RDJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF001TDO, ENCFF276DMI 1266799 ENCODE Processing Pipeline 284474be34c0186f427aeb0b2f56a45c https://www.encodeproject.org/files/ENCFF724RDJ/@@download/ENCFF724RDJ.bed.gz hg19 released antibody characterized with exemption ENCFF000NSJ bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NSW 856756292 Richard Myers, HAIB 0e6303469c9cb86a61f1814c21c69cb9 https://www.encodeproject.org/files/ENCFF000NSJ/@@download/ENCFF000NSJ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSK bigBed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWF 712596 Richard Myers, HAIB 9fcc7f70564a6956f3376514a69e05b0 https://www.encodeproject.org/files/ENCFF000NSK/@@download/ENCFF000NSK.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSL bigBed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWG 1157078 Richard Myers, HAIB d883e03bdd98233a782858ad2785cf74 https://www.encodeproject.org/files/ENCFF000NSL/@@download/ENCFF000NSL.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSM bigWig raw signal ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 19614342 Richard Myers, HAIB f090249f8c1ffb65a4c6cdddd5482bfa https://www.encodeproject.org/files/ENCFF000NSM/@@download/ENCFF000NSM.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NSN bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NSX 871125644 Richard Myers, HAIB 003671b1058149cc2c347dd76cf0d507 https://www.encodeproject.org/files/ENCFF000NSN/@@download/ENCFF000NSN.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSO bigWig raw signal ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 39327505 Richard Myers, HAIB b85aafd949adcd13e3b657c9be536e46 https://www.encodeproject.org/files/ENCFF000NSO/@@download/ENCFF000NSO.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NSW fastq reads ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 951134552 Richard Myers, HAIB aa65d657885a4390d0961e257e000436 https://www.encodeproject.org/files/ENCFF000NSW/@@download/ENCFF000NSW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF000NSX fastq reads ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 912657521 Richard Myers, HAIB 28f58f2b113e59626753f7a07a8bc0b6 https://www.encodeproject.org/files/ENCFF000NSX/@@download/ENCFF000NSX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWF bed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 1 411017 Richard Myers, HAIB 8e4f07fd87143796afe22dfe4fa1c5b6 https://www.encodeproject.org/files/ENCFF001TWF/@@download/ENCFF001TWF.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TWG bed broadPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 1 792885 Richard Myers, HAIB 2a2ffa9b8b813c4a95c5d47c1a803c7b https://www.encodeproject.org/files/ENCFF001TWG/@@download/ENCFF001TWG.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CGQ bed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 633359 ENCODE Consortium Analysis Working Group 68eab32a1070bca1a8bc5e9eb96f6c47 https://www.encodeproject.org/files/ENCFF002CGQ/@@download/ENCFF002CGQ.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF036BDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGQ 1410042 ENCODE Consortium 167b0284f66d5448c55a705f1fc723fe https://www.encodeproject.org/files/ENCFF036BDQ/@@download/ENCFF036BDQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF183OSG bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF643CGH 1136594916 ENCODE Processing Pipeline e7368e978b9f9c95e7977542a27b7670 https://www.encodeproject.org/files/ENCFF183OSG/@@download/ENCFF183OSG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF452LSN bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF643CGH 1186766493 ENCODE Processing Pipeline a36550270d5987883a7e19dc8b851659 https://www.encodeproject.org/files/ENCFF452LSN/@@download/ENCFF452LSN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF399QIP bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF643CGH 658647063 ENCODE Processing Pipeline 135436e87a5aa6285088d57b82206646 https://www.encodeproject.org/files/ENCFF399QIP/@@download/ENCFF399QIP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF802IZN bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF643CGH 687522694 ENCODE Processing Pipeline 572749ec1845e9028802b150709feda2 https://www.encodeproject.org/files/ENCFF802IZN/@@download/ENCFF802IZN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF346GCD bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF807MUK 1134228888 ENCODE Processing Pipeline 4b18d264a85c37566fefbb75be7762bd https://www.encodeproject.org/files/ENCFF346GCD/@@download/ENCFF346GCD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF558RVJ bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF807MUK 656607627 ENCODE Processing Pipeline 78aed600470dfaaf2da03c5bd17ff916 https://www.encodeproject.org/files/ENCFF558RVJ/@@download/ENCFF558RVJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF137FZZ bam unfiltered alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF807MUK 1182834623 ENCODE Processing Pipeline e680cc531d101df5c14bd93daeb2c052 https://www.encodeproject.org/files/ENCFF137FZZ/@@download/ENCFF137FZZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF850VBC bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF807MUK 683256234 ENCODE Processing Pipeline 2130a5993e4305023eab6958de843e31 https://www.encodeproject.org/files/ENCFF850VBC/@@download/ENCFF850VBC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF776NQC bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF399QIP, ENCFF562HPN 456016343 ENCODE Processing Pipeline f9173d1c59d666d0cb48dec6262ecdaf https://www.encodeproject.org/files/ENCFF776NQC/@@download/ENCFF776NQC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF657GHU bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF399QIP, ENCFF438FFV, ENCFF562HPN, ENCFF802IZN 889982687 ENCODE Processing Pipeline 4d5d2d9c767896386e71688dca3dd2a1 https://www.encodeproject.org/files/ENCFF657GHU/@@download/ENCFF657GHU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF704LSN bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF399QIP, ENCFF562HPN 4267001 ENCODE Processing Pipeline 092e74773a8c490e7463fd4674149e0f https://www.encodeproject.org/files/ENCFF704LSN/@@download/ENCFF704LSN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF735ZXJ bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF802IZN 287193147 ENCODE Processing Pipeline 0afd7d790feb367354a7ff3405d9aae5 https://www.encodeproject.org/files/ENCFF735ZXJ/@@download/ENCFF735ZXJ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF770KXF bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF802IZN 468123584 ENCODE Processing Pipeline 5e344ceb5b2f870470476d207bcbe8a4 https://www.encodeproject.org/files/ENCFF770KXF/@@download/ENCFF770KXF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF832YIE bed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF023JPV, ENCFF419RSJ, ENCFF471DNC, ENCFF704LSN 619153 ENCODE Processing Pipeline 8e4e292da42747043d1e759f09645b96 https://www.encodeproject.org/files/ENCFF832YIE/@@download/ENCFF832YIE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF765RYV bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF471DNC 11554051 ENCODE Processing Pipeline adba2b529e6942c2224036f55446b8f0 https://www.encodeproject.org/files/ENCFF765RYV/@@download/ENCFF765RYV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF388SRU bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF399QIP, ENCFF562HPN 290725176 ENCODE Processing Pipeline e1e48cdf02d3c9c83b9d97fa48790f1d https://www.encodeproject.org/files/ENCFF388SRU/@@download/ENCFF388SRU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF424MMT bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF399QIP, ENCFF438FFV, ENCFF562HPN, ENCFF802IZN 664584043 ENCODE Processing Pipeline 4f8b3d577b3e716b0c21dba8b985e502 https://www.encodeproject.org/files/ENCFF424MMT/@@download/ENCFF424MMT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF023JPV bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF802IZN 4688816 ENCODE Processing Pipeline 9f61169c23ba2f724a9b68b23b221d68 https://www.encodeproject.org/files/ENCFF023JPV/@@download/ENCFF023JPV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF471DNC bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF399QIP, ENCFF438FFV, ENCFF562HPN, ENCFF802IZN 5835967 ENCODE Processing Pipeline 08d66c598d22ecdea53984cd187de849 https://www.encodeproject.org/files/ENCFF471DNC/@@download/ENCFF471DNC.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF013CGK bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF704LSN 10483279 ENCODE Processing Pipeline 2526d2d73ae041b3cbc7f7b0333eff3c https://www.encodeproject.org/files/ENCFF013CGK/@@download/ENCFF013CGK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF045MGV bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF023JPV 10379242 ENCODE Processing Pipeline 1e7677739dc57d01a932f18018a47989 https://www.encodeproject.org/files/ENCFF045MGV/@@download/ENCFF045MGV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF826VTK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF832YIE 1113988 ENCODE Processing Pipeline bdaeea4956076624557300bb3381eede https://www.encodeproject.org/files/ENCFF826VTK/@@download/ENCFF826VTK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF142FZS bed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF023JPV, ENCFF419RSJ, ENCFF471DNC, ENCFF704LSN 503964 ENCODE Processing Pipeline 6df3b72bb3ef2038546f06c30cb8b0b2 https://www.encodeproject.org/files/ENCFF142FZS/@@download/ENCFF142FZS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF795UAN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF142FZS 959140 ENCODE Processing Pipeline d0a76d7c73f1e0f84b7e29ecb8065e28 https://www.encodeproject.org/files/ENCFF795UAN/@@download/ENCFF795UAN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF926YBS bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558RVJ, ENCFF837IOW, ENCFF850VBC, ENCFF958RTR 956195863 ENCODE Processing Pipeline 7f728ba7c02fa68b585b9f1d78b700c9 https://www.encodeproject.org/files/ENCFF926YBS/@@download/ENCFF926YBS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF331PAU bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 494833557 ENCODE Processing Pipeline 349de97b63d8a43dfd24c570dd096413 https://www.encodeproject.org/files/ENCFF331PAU/@@download/ENCFF331PAU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF413PZT bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558RVJ, ENCFF837IOW, ENCFF850VBC, ENCFF958RTR 665527096 ENCODE Processing Pipeline 9784b13df9bc89fc31127da11aa0371d https://www.encodeproject.org/files/ENCFF413PZT/@@download/ENCFF413PZT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF575XSY bigWig signal p-value ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 420592386 ENCODE Processing Pipeline 14a6f810e838160ccb509cba66a57fea https://www.encodeproject.org/files/ENCFF575XSY/@@download/ENCFF575XSY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF810WXY bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 289687774 ENCODE Processing Pipeline f25391bb8be2e9bfb4463b3ba1b02339 https://www.encodeproject.org/files/ENCFF810WXY/@@download/ENCFF810WXY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF482FJT bed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF078EBJ, ENCFF521MBW, ENCFF887VZZ 477696 ENCODE Processing Pipeline ab16892958a2724272194ef04bcd92f5 https://www.encodeproject.org/files/ENCFF482FJT/@@download/ENCFF482FJT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF936ACZ bigWig fold change over control ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 285083863 ENCODE Processing Pipeline ed29e1615a41ce65795f58402742b0cd https://www.encodeproject.org/files/ENCFF936ACZ/@@download/ENCFF936ACZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF521MBW bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558RVJ, ENCFF837IOW, ENCFF850VBC, ENCFF958RTR 5582668 ENCODE Processing Pipeline 8f717351d62201bcf8422ba48029426f https://www.encodeproject.org/files/ENCFF521MBW/@@download/ENCFF521MBW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF887VZZ bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 4256624 ENCODE Processing Pipeline 233a9430984404d152bb5e70c69c3bc6 https://www.encodeproject.org/files/ENCFF887VZZ/@@download/ENCFF887VZZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF583ZPC bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF078EBJ 10410685 ENCODE Processing Pipeline 675ac4208d4ca3dd6a8a0cbba9333543 https://www.encodeproject.org/files/ENCFF583ZPC/@@download/ENCFF583ZPC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF593FBF bed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF078EBJ, ENCFF521MBW, ENCFF887VZZ 573169 ENCODE Processing Pipeline 40e640037d380cec9194af33adafd71e https://www.encodeproject.org/files/ENCFF593FBF/@@download/ENCFF593FBF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF078EBJ bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 4712048 ENCODE Processing Pipeline cb1dad2c3fc0d5a95c7389785e59fc44 https://www.encodeproject.org/files/ENCFF078EBJ/@@download/ENCFF078EBJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF751UIH bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF887VZZ 10468347 ENCODE Processing Pipeline 07c19121886f3b286d82961dcad8f127 https://www.encodeproject.org/files/ENCFF751UIH/@@download/ENCFF751UIH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF680OYH bigBed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF521MBW 11265995 ENCODE Processing Pipeline 8f13152cf32e50c64987f88cbcbc328f https://www.encodeproject.org/files/ENCFF680OYH/@@download/ENCFF680OYH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF243MVH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF482FJT 912514 ENCODE Processing Pipeline 9625995a648b711178fc4b617659ae01 https://www.encodeproject.org/files/ENCFF243MVH/@@download/ENCFF243MVH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF644RJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593FBF 1037564 ENCODE Processing Pipeline 0888e67e824c579a33a8ce20aa14c894 https://www.encodeproject.org/files/ENCFF644RJO/@@download/ENCFF644RJO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF976CAW fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF130AIS 1198068673 Michael Snyder, Stanford 4b0dd08076866fa85725ba50c5cbc297 SRA:SRR6213594 https://www.encodeproject.org/files/ENCFF976CAW/@@download/ENCFF976CAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF007ATP/ released mild to moderate bottlenecking ENCFF130AIS fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF976CAW 1233323238 Michael Snyder, Stanford 6750110a3359d752daedc252cbcad86b SRA:SRR6213594 https://www.encodeproject.org/files/ENCFF130AIS/@@download/ENCFF130AIS.fastq.gz Illumina HiSeq 2000 /files/ENCFF056XEJ/ released mild to moderate bottlenecking ENCFF071LWT fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF882VBQ 751135366 Michael Snyder, Stanford 5d01da805713f523993e04f726fe8e16 SRA:SRR6213592 https://www.encodeproject.org/files/ENCFF071LWT/@@download/ENCFF071LWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF928OBE/ released mild to moderate bottlenecking ENCFF882VBQ fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF071LWT 762996236 Michael Snyder, Stanford 8b35d4bb87f5e47ca246120ac372140c SRA:SRR6213592 https://www.encodeproject.org/files/ENCFF882VBQ/@@download/ENCFF882VBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF619MWU/ released mild to moderate bottlenecking ENCFF643KQW fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF224VKL 3073542749 Michael Snyder, Stanford 71c949c286881212437d42a6f292d1c5 SRA:SRR6213595 https://www.encodeproject.org/files/ENCFF643KQW/@@download/ENCFF643KQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF007ATP/ released mild to moderate bottlenecking ENCFF224VKL fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF643KQW 3138896402 Michael Snyder, Stanford f579be95c4964cc8d1ec8b2ca68f71c2 SRA:SRR6213595 https://www.encodeproject.org/files/ENCFF224VKL/@@download/ENCFF224VKL.fastq.gz Illumina HiSeq 2000 /files/ENCFF056XEJ/ released mild to moderate bottlenecking ENCFF813EGO fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF232YUA 3812988869 Michael Snyder, Stanford cdcf55994815610a68699fdacc9b9841 SRA:SRR6213593 https://www.encodeproject.org/files/ENCFF813EGO/@@download/ENCFF813EGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF928OBE/ released mild to moderate bottlenecking ENCFF232YUA fastq reads ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF813EGO 3858326900 Michael Snyder, Stanford ef4fe1969b8fc718c7c1cac04df9aefb SRA:SRR6213593 https://www.encodeproject.org/files/ENCFF232YUA/@@download/ENCFF232YUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF619MWU/ released mild to moderate bottlenecking ENCFF843RDS bam unfiltered alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF130AIS, ENCFF224VKL, ENCFF643KQW, ENCFF807MUK, ENCFF976CAW 8288973946 ENCODE Processing Pipeline 2441e4fe6f506788f5a59df8268f8a11 https://www.encodeproject.org/files/ENCFF843RDS/@@download/ENCFF843RDS.bam hg19 released mild to moderate bottlenecking ENCFF852QTC bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF130AIS, ENCFF224VKL, ENCFF643CGH, ENCFF643KQW, ENCFF976CAW 6557271254 ENCODE Processing Pipeline e783d1bd53019f4a8bd178a5e7fc469f https://www.encodeproject.org/files/ENCFF852QTC/@@download/ENCFF852QTC.bam GRCh38 released mild to moderate bottlenecking ENCFF527UMP bam unfiltered alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF071LWT, ENCFF232YUA, ENCFF807MUK, ENCFF813EGO, ENCFF882VBQ 8904317394 ENCODE Processing Pipeline 169b84c630d281e9bca29ee5f9757aea https://www.encodeproject.org/files/ENCFF527UMP/@@download/ENCFF527UMP.bam hg19 released mild to moderate bottlenecking ENCFF556ZML bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF130AIS, ENCFF224VKL, ENCFF643KQW, ENCFF807MUK, ENCFF976CAW 6551754271 ENCODE Processing Pipeline b22a68201852f6d69b2c8bcd8fe365b3 https://www.encodeproject.org/files/ENCFF556ZML/@@download/ENCFF556ZML.bam hg19 released mild to moderate bottlenecking ENCFF491ZOM bam unfiltered alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF130AIS, ENCFF224VKL, ENCFF643CGH, ENCFF643KQW, ENCFF976CAW 8298220977 ENCODE Processing Pipeline 0d90c46f14e5316db2f0433610a0774b https://www.encodeproject.org/files/ENCFF491ZOM/@@download/ENCFF491ZOM.bam GRCh38 released mild to moderate bottlenecking ENCFF401UTY bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF071LWT, ENCFF232YUA, ENCFF807MUK, ENCFF813EGO, ENCFF882VBQ 7426890199 ENCODE Processing Pipeline 12020cf13b6f2668680f35f08e695af0 https://www.encodeproject.org/files/ENCFF401UTY/@@download/ENCFF401UTY.bam hg19 released mild to moderate bottlenecking ENCFF475DLA bam unfiltered alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF071LWT, ENCFF232YUA, ENCFF643CGH, ENCFF813EGO, ENCFF882VBQ 8918622541 ENCODE Processing Pipeline 9b4868d0880f48db9bf6a710353dd617 https://www.encodeproject.org/files/ENCFF475DLA/@@download/ENCFF475DLA.bam GRCh38 released mild to moderate bottlenecking ENCFF936NPT bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF071LWT, ENCFF232YUA, ENCFF643CGH, ENCFF813EGO, ENCFF882VBQ 7434548966 ENCODE Processing Pipeline 83702458f69aacff21ce3892b918c115 https://www.encodeproject.org/files/ENCFF936NPT/@@download/ENCFF936NPT.bam GRCh38 released mild to moderate bottlenecking ENCFF619WYQ bigWig fold change over control ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 1599999934 ENCODE Processing Pipeline 859d7ec13f6efc26f677855853b4acac https://www.encodeproject.org/files/ENCFF619WYQ/@@download/ENCFF619WYQ.bigWig hg19 released mild to moderate bottlenecking ENCFF870TEV bigWig fold change over control ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF401UTY, ENCFF801WHL, ENCFF923EBC 1721262178 ENCODE Processing Pipeline 67616f30184957547865be3ab9dd51c5 https://www.encodeproject.org/files/ENCFF870TEV/@@download/ENCFF870TEV.bigWig hg19 released mild to moderate bottlenecking ENCFF508LBP bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 7137866 ENCODE Processing Pipeline aae0298678f287cb1ba69c6b6b52ea88 https://www.encodeproject.org/files/ENCFF508LBP/@@download/ENCFF508LBP.bed.gz hg19 released mild to moderate bottlenecking ENCFF465DTB bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF401UTY, ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 7209998 ENCODE Processing Pipeline a8611b64685e6f2d499a3170f3e988f6 https://www.encodeproject.org/files/ENCFF465DTB/@@download/ENCFF465DTB.bed.gz hg19 released mild to moderate bottlenecking ENCFF535ZRL bigWig fold change over control ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF401UTY, ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 2231330346 ENCODE Processing Pipeline 46ecccccc143a623262155c1d8b10920 https://www.encodeproject.org/files/ENCFF535ZRL/@@download/ENCFF535ZRL.bigWig hg19 released mild to moderate bottlenecking ENCFF959AND bigBed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF465DTB 12822818 ENCODE Processing Pipeline 16ccba489abb072f953cad5a9a73e4ee https://www.encodeproject.org/files/ENCFF959AND/@@download/ENCFF959AND.bigBed hg19 released mild to moderate bottlenecking ENCFF619VIH bigWig signal p-value ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 906641074 ENCODE Processing Pipeline 5c8d8f485e6444f7a68f53798002bdcb https://www.encodeproject.org/files/ENCFF619VIH/@@download/ENCFF619VIH.bigWig hg19 released mild to moderate bottlenecking ENCFF723XDD bed narrowPeak conservative idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF328CFX, ENCFF465DTB, ENCFF508LBP 1649300 ENCODE Processing Pipeline 9f8389f107a407b2566f196bb42ba2ae https://www.encodeproject.org/files/ENCFF723XDD/@@download/ENCFF723XDD.bed.gz hg19 released mild to moderate bottlenecking ENCFF658MKE bed narrowPeak optimal idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF328CFX, ENCFF465DTB, ENCFF508LBP 1695710 ENCODE Processing Pipeline 262873360f58bf6d1bee505e706eb21c https://www.encodeproject.org/files/ENCFF658MKE/@@download/ENCFF658MKE.bed.gz hg19 released mild to moderate bottlenecking ENCFF627VIL bigBed narrowPeak optimal idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF658MKE 3813807 ENCODE Processing Pipeline a051a6b0d69053e78b8a4dfaf1235b05 https://www.encodeproject.org/files/ENCFF627VIL/@@download/ENCFF627VIL.bigBed hg19 released mild to moderate bottlenecking ENCFF709COP bigWig signal p-value ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF401UTY, ENCFF801WHL, ENCFF923EBC 1108858178 ENCODE Processing Pipeline 54c58f8f0e5bef4c74433762c41d468f https://www.encodeproject.org/files/ENCFF709COP/@@download/ENCFF709COP.bigWig hg19 released mild to moderate bottlenecking ENCFF613PGY bigBed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF508LBP 12794732 ENCODE Processing Pipeline 0b3ffcbb8ff2240d9bd8e98bf076a3bb https://www.encodeproject.org/files/ENCFF613PGY/@@download/ENCFF613PGY.bigBed hg19 released mild to moderate bottlenecking ENCFF175DSA bigWig signal p-value ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF401UTY, ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 1310353686 ENCODE Processing Pipeline 5d36891eccf5084529f0da3a943fa8a0 https://www.encodeproject.org/files/ENCFF175DSA/@@download/ENCFF175DSA.bigWig hg19 released mild to moderate bottlenecking ENCFF328CFX bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF401UTY, ENCFF801WHL, ENCFF923EBC 7136440 ENCODE Processing Pipeline 810236d029fcaf78be8fa13ce6816e7d https://www.encodeproject.org/files/ENCFF328CFX/@@download/ENCFF328CFX.bed.gz hg19 released mild to moderate bottlenecking ENCFF097GUI bigBed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF328CFX 12992563 ENCODE Processing Pipeline 73e7a987657e07999bccda035c2f6551 https://www.encodeproject.org/files/ENCFF097GUI/@@download/ENCFF097GUI.bigBed hg19 released mild to moderate bottlenecking ENCFF247LGL bigBed narrowPeak conservative idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF723XDD 3677965 ENCODE Processing Pipeline daeb5c28bfc73d5253f5e74cbc57b4bb https://www.encodeproject.org/files/ENCFF247LGL/@@download/ENCFF247LGL.bigBed hg19 released mild to moderate bottlenecking ENCFF058UJL bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF244UGL, ENCFF852QTC, ENCFF936NPT, ENCFF980IJT 7118156 ENCODE Processing Pipeline 3d128006acbfb3021bddb79ada6eeff4 https://www.encodeproject.org/files/ENCFF058UJL/@@download/ENCFF058UJL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF643ECT bigBed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF822EPQ 12957749 ENCODE Processing Pipeline 4fd41896b594bc1471ba9711e138e2a8 https://www.encodeproject.org/files/ENCFF643ECT/@@download/ENCFF643ECT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF388AUB bigBed narrowPeak optimal idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF675JFN 3028330 ENCODE Processing Pipeline 341a3730099c7e8d7e9f9ca90a1db268 https://www.encodeproject.org/files/ENCFF388AUB/@@download/ENCFF388AUB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF675NDT bigWig signal p-value ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF244UGL, ENCFF852QTC, ENCFF980IJT 1161879339 ENCODE Processing Pipeline 6a0a3296dedb827f39feaba99135d7ce https://www.encodeproject.org/files/ENCFF675NDT/@@download/ENCFF675NDT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF114WYI bigWig fold change over control ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF244UGL, ENCFF852QTC, ENCFF980IJT 1601808369 ENCODE Processing Pipeline 33ca47b2b88cb6f095409c83287a9b3e https://www.encodeproject.org/files/ENCFF114WYI/@@download/ENCFF114WYI.bigWig GRCh38 released mild to moderate bottlenecking ENCFF604GXC bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF244UGL, ENCFF852QTC, ENCFF980IJT 7054550 ENCODE Processing Pipeline 2f36b2cd5be44897ae4e1f030dfa2b36 https://www.encodeproject.org/files/ENCFF604GXC/@@download/ENCFF604GXC.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF517PEZ bigWig signal p-value ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF244UGL, ENCFF936NPT, ENCFF980IJT 1134953774 ENCODE Processing Pipeline 99589003c718f619bcb6b4d9b4701260 https://www.encodeproject.org/files/ENCFF517PEZ/@@download/ENCFF517PEZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF289MVP bigWig signal p-value ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF244UGL, ENCFF852QTC, ENCFF936NPT, ENCFF980IJT 1315887667 ENCODE Processing Pipeline fd9efd13cdb2b264ce4023bc332476e0 https://www.encodeproject.org/files/ENCFF289MVP/@@download/ENCFF289MVP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF428KZM bigWig fold change over control ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF244UGL, ENCFF936NPT, ENCFF980IJT 1724292529 ENCODE Processing Pipeline b0b2024b2cd8edcca064bf45332a8424 https://www.encodeproject.org/files/ENCFF428KZM/@@download/ENCFF428KZM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF319XGW bigWig fold change over control ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF244UGL, ENCFF852QTC, ENCFF936NPT, ENCFF980IJT 2234431028 ENCODE Processing Pipeline f2d7a7a4f4883fb81a7c4fe18daee272 https://www.encodeproject.org/files/ENCFF319XGW/@@download/ENCFF319XGW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF822EPQ bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF244UGL, ENCFF936NPT, ENCFF980IJT 7096278 ENCODE Processing Pipeline de58e235c2beafd4cf709c2bfde2b0b0 https://www.encodeproject.org/files/ENCFF822EPQ/@@download/ENCFF822EPQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF738MWM bigBed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF604GXC 12689004 ENCODE Processing Pipeline b9c7673161dbdad6a07d8beeb26f90c8 https://www.encodeproject.org/files/ENCFF738MWM/@@download/ENCFF738MWM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF880LTL bed narrowPeak conservative idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF058UJL, ENCFF419RSJ, ENCFF604GXC, ENCFF822EPQ 1633166 ENCODE Processing Pipeline c133d23bc31df0a751e63d33bd146d73 https://www.encodeproject.org/files/ENCFF880LTL/@@download/ENCFF880LTL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF164CFN bigBed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF058UJL 12700932 ENCODE Processing Pipeline cdeeffe40778048018dd9afc320f69c3 https://www.encodeproject.org/files/ENCFF164CFN/@@download/ENCFF164CFN.bigBed GRCh38 released mild to moderate bottlenecking ENCFF360JBX bigBed narrowPeak conservative idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF880LTL 3638261 ENCODE Processing Pipeline ddb385bea3064028a6a548f48c33d54d https://www.encodeproject.org/files/ENCFF360JBX/@@download/ENCFF360JBX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF675JFN bed narrowPeak optimal idr thresholded peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF058UJL, ENCFF419RSJ, ENCFF604GXC, ENCFF822EPQ 1676597 ENCODE Processing Pipeline cb14c6d7011d12cb9214edc4db0d8f2b https://www.encodeproject.org/files/ENCFF675JFN/@@download/ENCFF675JFN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF000YRE bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 634295230 Michael Snyder, Stanford 81f9cfe9e777901c0d34af4d71f6dc1e https://www.encodeproject.org/files/ENCFF000YRE/@@download/ENCFF000YRE.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000YRF bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 645739223 Michael Snyder, Stanford 3dbe3a88e17fd0b9ab18bd5c28988e69 https://www.encodeproject.org/files/ENCFF000YRF/@@download/ENCFF000YRF.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000YRG bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VNL 1620136 Michael Snyder, Stanford a07888cac8da7918f83cedb706fab786 https://www.encodeproject.org/files/ENCFF000YRG/@@download/ENCFF000YRG.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000YRH fastq reads ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1165317779 Michael Snyder, Stanford 27fe14abc081794953d467d2401cd6f9 https://www.encodeproject.org/files/ENCFF000YRH/@@download/ENCFF000YRH.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000YRJ fastq reads ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1125221848 Michael Snyder, Stanford 73690fc4dee3e5b3612cb9bfd4ebcbe4 https://www.encodeproject.org/files/ENCFF000YRJ/@@download/ENCFF000YRJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000YRL bigWig signal ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 441660879 Michael Snyder, Stanford 57a385d4e51b4dfc11a7755b59b95346 https://www.encodeproject.org/files/ENCFF000YRL/@@download/ENCFF000YRL.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF001VNL bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 777725 Michael Snyder, Stanford c9ce493872b283bdc57102c6469aed39 https://www.encodeproject.org/files/ENCFF001VNL/@@download/ENCFF001VNL.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF002CWW bed narrowPeak optimal idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 217639 ENCODE Consortium Analysis Working Group 7abe5f941557c480b288e4e5411459e0 https://www.encodeproject.org/files/ENCFF002CWW/@@download/ENCFF002CWW.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF938SGM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CWW 561633 ENCODE Consortium 9dabd119807a7d89bfdf80d2e497775d https://www.encodeproject.org/files/ENCFF938SGM/@@download/ENCFF938SGM.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF780TME bam unfiltered alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRJ, ENCFF807MUK 1146998500 ENCODE Processing Pipeline ffdbede8e9d9fb9b6bfffa770ef78e4f https://www.encodeproject.org/files/ENCFF780TME/@@download/ENCFF780TME.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF519LOD bam unfiltered alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRH, ENCFF807MUK 1141845244 ENCODE Processing Pipeline 7fb7e9eb2bdf1698c167edd04a19d866 https://www.encodeproject.org/files/ENCFF519LOD/@@download/ENCFF519LOD.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF026NGK bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRJ, ENCFF807MUK 721524934 ENCODE Processing Pipeline 78f47e66157e9f17034feadd6af501bc https://www.encodeproject.org/files/ENCFF026NGK/@@download/ENCFF026NGK.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF792CXJ bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRH, ENCFF807MUK 684188866 ENCODE Processing Pipeline 776acd1741dc050d7153457826999814 https://www.encodeproject.org/files/ENCFF792CXJ/@@download/ENCFF792CXJ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF802ILZ bigWig signal p-value ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF792CXJ, ENCFF998GMZ 338930213 ENCODE Processing Pipeline 3cca1a09ec141a207e1be7cd119a7095 https://www.encodeproject.org/files/ENCFF802ILZ/@@download/ENCFF802ILZ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF123AXY bigWig signal p-value ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF026NGK, ENCFF998GMZ 326661972 ENCODE Processing Pipeline 2fcfe5809572e25d882cb52f497da6ac https://www.encodeproject.org/files/ENCFF123AXY/@@download/ENCFF123AXY.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF354OTY bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF517QNU 10407397 ENCODE Processing Pipeline 74f3424019d1e337d3966f088c909797 https://www.encodeproject.org/files/ENCFF354OTY/@@download/ENCFF354OTY.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF402YFM bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF920BWA 10715550 ENCODE Processing Pipeline b4a8be7b3992cd97d6eeedfe2ef081cc https://www.encodeproject.org/files/ENCFF402YFM/@@download/ENCFF402YFM.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF294MPW bigWig signal p-value ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF026NGK, ENCFF792CXJ, ENCFF998GMZ 343051098 ENCODE Processing Pipeline 85f4901b4dab8814376696eec09fef54 https://www.encodeproject.org/files/ENCFF294MPW/@@download/ENCFF294MPW.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF191ZPS bigWig fold change over control ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF792CXJ, ENCFF998GMZ 351898243 ENCODE Processing Pipeline b5989dc75e909bd0645ebce55e9d057d https://www.encodeproject.org/files/ENCFF191ZPS/@@download/ENCFF191ZPS.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF573UDQ bigWig fold change over control ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF026NGK, ENCFF998GMZ 360074193 ENCODE Processing Pipeline c54b2cea4ccb26e84b49c1bfb2d84b8f https://www.encodeproject.org/files/ENCFF573UDQ/@@download/ENCFF573UDQ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF979SUZ bigWig fold change over control ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF026NGK, ENCFF792CXJ, ENCFF998GMZ 607262116 ENCODE Processing Pipeline c98a17ce9b574093d2df34415816d3a5 https://www.encodeproject.org/files/ENCFF979SUZ/@@download/ENCFF979SUZ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF517QNU bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF026NGK, ENCFF998GMZ 4438555 ENCODE Processing Pipeline 3214b84988940e0c8d9440e92627a546 https://www.encodeproject.org/files/ENCFF517QNU/@@download/ENCFF517QNU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF602EGF bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF025ZWJ 11018195 ENCODE Processing Pipeline 34b2ded5614eefcf1a19b5344cf380ae https://www.encodeproject.org/files/ENCFF602EGF/@@download/ENCFF602EGF.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF546ZGF bed narrowPeak conservative idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF025ZWJ, ENCFF517QNU, ENCFF920BWA 192279 ENCODE Processing Pipeline f63ed3aa130f8f9f7736195158053c26 https://www.encodeproject.org/files/ENCFF546ZGF/@@download/ENCFF546ZGF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF543CGB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF546ZGF 396255 ENCODE Processing Pipeline f0b3b557ee1b45f552a751e7504d50e6 https://www.encodeproject.org/files/ENCFF543CGB/@@download/ENCFF543CGB.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF909LKK bed narrowPeak optimal idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF025ZWJ, ENCFF517QNU, ENCFF920BWA 231075 ENCODE Processing Pipeline c977d55edfbe570ff2123255d9b82488 https://www.encodeproject.org/files/ENCFF909LKK/@@download/ENCFF909LKK.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF663HVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF909LKK 450904 ENCODE Processing Pipeline df6e175146f9fc19ad354d1295cd6d34 https://www.encodeproject.org/files/ENCFF663HVJ/@@download/ENCFF663HVJ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF259RRK bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRH, ENCFF643CGH 683456399 ENCODE Processing Pipeline 6c352c50bc6fb0f963db23ec7085620c https://www.encodeproject.org/files/ENCFF259RRK/@@download/ENCFF259RRK.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF929ENI bam unfiltered alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRH, ENCFF643CGH 1145604718 ENCODE Processing Pipeline 0b33a75fc90ef5f084a3b9f710e3593c https://www.encodeproject.org/files/ENCFF929ENI/@@download/ENCFF929ENI.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF509OLO bam unfiltered alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRJ, ENCFF643CGH 1151001301 ENCODE Processing Pipeline 1c7e169cec083e32137c30bedd6259de https://www.encodeproject.org/files/ENCFF509OLO/@@download/ENCFF509OLO.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF244IJF bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRJ, ENCFF643CGH 720722815 ENCODE Processing Pipeline 42886c9aa6d7a45ab34ae6ad18765033 https://www.encodeproject.org/files/ENCFF244IJF/@@download/ENCFF244IJF.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF134FOD bigWig signal p-value ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF259RRK, ENCFF332CUX 342642930 ENCODE Processing Pipeline cb41f7075ba966d6d390195f3950d3a3 https://www.encodeproject.org/files/ENCFF134FOD/@@download/ENCFF134FOD.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF454FUO bigWig signal p-value ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF244IJF, ENCFF332CUX 326216358 ENCODE Processing Pipeline ca388819010680037863cba4705aa100 https://www.encodeproject.org/files/ENCFF454FUO/@@download/ENCFF454FUO.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF920BWA bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF792CXJ, ENCFF998GMZ 4768546 ENCODE Processing Pipeline d2ae07c82add76b2ff8ffbc3942cd603 https://www.encodeproject.org/files/ENCFF920BWA/@@download/ENCFF920BWA.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF025ZWJ bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF026NGK, ENCFF792CXJ, ENCFF998GMZ 5406424 ENCODE Processing Pipeline 107166fd128de35831d2948c2c5da9d5 https://www.encodeproject.org/files/ENCFF025ZWJ/@@download/ENCFF025ZWJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF502AUX bigWig signal p-value ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF244IJF, ENCFF259RRK, ENCFF332CUX 342719904 ENCODE Processing Pipeline f2defd0cbb4e1a971c25a9d76e030428 https://www.encodeproject.org/files/ENCFF502AUX/@@download/ENCFF502AUX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF410QCA bigWig fold change over control ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF259RRK, ENCFF332CUX 352175746 ENCODE Processing Pipeline 689aa86fa498f3c2f3f5fc1eccbc3ca2 https://www.encodeproject.org/files/ENCFF410QCA/@@download/ENCFF410QCA.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF152BMD bigWig fold change over control ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF244IJF, ENCFF332CUX 359374313 ENCODE Processing Pipeline 3064b230d26dfecaeece082777fec319 https://www.encodeproject.org/files/ENCFF152BMD/@@download/ENCFF152BMD.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF172XHL bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF244IJF, ENCFF259RRK, ENCFF332CUX 5357987 ENCODE Processing Pipeline 460d44c7bdba7887a4c5b3ad35750b0f https://www.encodeproject.org/files/ENCFF172XHL/@@download/ENCFF172XHL.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF452YAU bigWig fold change over control ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF244IJF, ENCFF259RRK, ENCFF332CUX 611965393 ENCODE Processing Pipeline f1f28453df76593e8a14c127d304c136 https://www.encodeproject.org/files/ENCFF452YAU/@@download/ENCFF452YAU.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF816CMK bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF259RRK, ENCFF332CUX 4742350 ENCODE Processing Pipeline 641168b46cbb841aa69ad60152907f10 https://www.encodeproject.org/files/ENCFF816CMK/@@download/ENCFF816CMK.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF928TBI bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF244IJF, ENCFF332CUX 4429693 ENCODE Processing Pipeline 5f66e8cf8fb59691a3d991b9e9dcc587 https://www.encodeproject.org/files/ENCFF928TBI/@@download/ENCFF928TBI.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF429YXU bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF928TBI 10400360 ENCODE Processing Pipeline c6ac03f3ad44235466d98587b96b9eca https://www.encodeproject.org/files/ENCFF429YXU/@@download/ENCFF429YXU.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF008FES bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF816CMK 10689894 ENCODE Processing Pipeline 91c40094dc23bc71bc05ff7668b6c59a https://www.encodeproject.org/files/ENCFF008FES/@@download/ENCFF008FES.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF560OKM bigBed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF172XHL 11003039 ENCODE Processing Pipeline f47375d1fe7d05992c07b21d10fcb1b7 https://www.encodeproject.org/files/ENCFF560OKM/@@download/ENCFF560OKM.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF736MBF bed narrowPeak conservative idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF172XHL, ENCFF419RSJ, ENCFF816CMK, ENCFF928TBI 187311 ENCODE Processing Pipeline 721befe204f5cd95a7645193dc86ebf1 https://www.encodeproject.org/files/ENCFF736MBF/@@download/ENCFF736MBF.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF438KDS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF736MBF 391071 ENCODE Processing Pipeline 8386224f161b93f9804dd7edbb743598 https://www.encodeproject.org/files/ENCFF438KDS/@@download/ENCFF438KDS.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF978BBL bed narrowPeak optimal idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF172XHL, ENCFF419RSJ, ENCFF816CMK, ENCFF928TBI 222922 ENCODE Processing Pipeline 3cf058dd9ea7d55c1849293e4292fee6 https://www.encodeproject.org/files/ENCFF978BBL/@@download/ENCFF978BBL.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF319KTK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF978BBL 442067 ENCODE Processing Pipeline 55c8fbf16116a9399e7737b45f0f74f8 https://www.encodeproject.org/files/ENCFF319KTK/@@download/ENCFF319KTK.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000QWI bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QWY 241257212 Richard Myers, HAIB c6cc0febbca4536c95f92abcfb912b95 https://www.encodeproject.org/files/ENCFF000QWI/@@download/ENCFF000QWI.bam hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWJ bigBed broadPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UOV 117590 Richard Myers, HAIB c868d442d1e6d1ce7c0f4c985169952d https://www.encodeproject.org/files/ENCFF000QWJ/@@download/ENCFF000QWJ.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWK bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QWW 405832537 Richard Myers, HAIB f95b7ba81a6485bb4696d681f09aa3fd https://www.encodeproject.org/files/ENCFF000QWK/@@download/ENCFF000QWK.bam hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWL bigBed broadPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UOW 663154 Richard Myers, HAIB 3fede79166fcc3a0304c10e2e66b214a https://www.encodeproject.org/files/ENCFF000QWL/@@download/ENCFF000QWL.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWM bigWig raw signal ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 12105697 Richard Myers, HAIB 880634685d17935f49a3d9f7488aa029 https://www.encodeproject.org/files/ENCFF000QWM/@@download/ENCFF000QWM.bigWig hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWO bigWig raw signal ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 8069953 Richard Myers, HAIB 72869a7482a66a8175d83db2d4ed6d50 https://www.encodeproject.org/files/ENCFF000QWO/@@download/ENCFF000QWO.bigWig hg19 archived mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWW fastq reads ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 25 single-ended 307892911 Richard Myers, HAIB 3b8935a2a2f80c966e27fcabbeb74822 https://www.encodeproject.org/files/ENCFF000QWW/@@download/ENCFF000QWW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QXN/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF000QWY fastq reads ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 25 single-ended 200298679 Richard Myers, HAIB a1678b9b8bc8b2bd0aede0b0dfea82a2 https://www.encodeproject.org/files/ENCFF000QWY/@@download/ENCFF000QWY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QXN/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF001UOV bed broadPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 50358 Richard Myers, HAIB dc081a90c8e256f79f8d2419478a2fc1 https://www.encodeproject.org/files/ENCFF001UOV/@@download/ENCFF001UOV.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, extremely low read length ENCFF001UOW bed broadPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 365908 Richard Myers, HAIB 461117c298ded6fa4369897c49759d54 https://www.encodeproject.org/files/ENCFF001UOW/@@download/ENCFF001UOW.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF002CNH bed narrowPeak optimal idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 299329 ENCODE Consortium Analysis Working Group a744075d752f05f90fc61e946d27754c https://www.encodeproject.org/files/ENCFF002CNH/@@download/ENCFF002CNH.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, extremely low read length ENCFF067SPT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNH 561316 ENCODE Consortium 14cd398ef678df81ff3c418b307c924c https://www.encodeproject.org/files/ENCFF067SPT/@@download/ENCFF067SPT.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF257YRW bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QWY, ENCFF807MUK 136915757 ENCODE Processing Pipeline 9927e17002c837d5f80cd4cd5c96bb4b https://www.encodeproject.org/files/ENCFF257YRW/@@download/ENCFF257YRW.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF528VHB bam unfiltered alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QWY, ENCFF807MUK 317167248 ENCODE Processing Pipeline 414a3261ca07752fc95473b3b2c3e797 https://www.encodeproject.org/files/ENCFF528VHB/@@download/ENCFF528VHB.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF462QPA bam unfiltered alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QWY, ENCFF643CGH 318172148 ENCODE Processing Pipeline be3e8217d56e07ce7fbd2ea7d3228a53 https://www.encodeproject.org/files/ENCFF462QPA/@@download/ENCFF462QPA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF450GSC bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QWY, ENCFF643CGH 136699981 ENCODE Processing Pipeline 180a2173713c208defdec19a770596ce https://www.encodeproject.org/files/ENCFF450GSC/@@download/ENCFF450GSC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF034ZGA bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QWW, ENCFF643CGH 285553914 ENCODE Processing Pipeline 9618070dadc022121de34d5528fb5b74 https://www.encodeproject.org/files/ENCFF034ZGA/@@download/ENCFF034ZGA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF438XDP bam unfiltered alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QWW, ENCFF643CGH 507087427 ENCODE Processing Pipeline 1f572b55ab7c0f60338ebc08f45e560a https://www.encodeproject.org/files/ENCFF438XDP/@@download/ENCFF438XDP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF161AYB bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QWW, ENCFF807MUK 285953767 ENCODE Processing Pipeline 7b4ddf111ce203d89788d1cbec2c4528 https://www.encodeproject.org/files/ENCFF161AYB/@@download/ENCFF161AYB.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF648ANZ bam unfiltered alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QWW, ENCFF807MUK 506221329 ENCODE Processing Pipeline 76dc717be87f20f560c2da4e904027f2 https://www.encodeproject.org/files/ENCFF648ANZ/@@download/ENCFF648ANZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF576MQI bigWig signal p-value ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032SQZ, ENCFF257YRW 133950590 ENCODE Processing Pipeline 70c695dcd0ed0ea50fe67969c6ec785d https://www.encodeproject.org/files/ENCFF576MQI/@@download/ENCFF576MQI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF510WZL bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032SQZ, ENCFF257YRW 2819827 ENCODE Processing Pipeline a87f8be6a5385104cb344a3d2bd94a7a https://www.encodeproject.org/files/ENCFF510WZL/@@download/ENCFF510WZL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF398FBV bed narrowPeak optimal idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF510WZL, ENCFF718CML, ENCFF954MNX 185148 ENCODE Processing Pipeline efd800edbc1a0fba7b1c1a1ec8fb415d https://www.encodeproject.org/files/ENCFF398FBV/@@download/ENCFF398FBV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF490QPI bigWig signal p-value ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032SQZ, ENCFF161AYB 132039449 ENCODE Processing Pipeline dbfcaf98f57caccab42e007b864f19b1 https://www.encodeproject.org/files/ENCFF490QPI/@@download/ENCFF490QPI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF542RLV bed narrowPeak conservative idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF510WZL, ENCFF718CML, ENCFF954MNX 176595 ENCODE Processing Pipeline daae11f224bc7cea7ab2ddc32d3ebe88 https://www.encodeproject.org/files/ENCFF542RLV/@@download/ENCFF542RLV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF644AYN bigWig signal p-value ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032SQZ, ENCFF161AYB, ENCFF257YRW 119083047 ENCODE Processing Pipeline a319bc4aaadb8f14b62b83a61dd15fe6 https://www.encodeproject.org/files/ENCFF644AYN/@@download/ENCFF644AYN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF271VSE bigWig fold change over control ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032SQZ, ENCFF161AYB 130791299 ENCODE Processing Pipeline 5e5668809a3210ef73cbffdf4c5ba14d https://www.encodeproject.org/files/ENCFF271VSE/@@download/ENCFF271VSE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF718CML bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032SQZ, ENCFF161AYB, ENCFF257YRW 4619500 ENCODE Processing Pipeline e990bcd64db7964dbd1c63ca6d02d632 https://www.encodeproject.org/files/ENCFF718CML/@@download/ENCFF718CML.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF478IMF bigWig fold change over control ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032SQZ, ENCFF257YRW 139622928 ENCODE Processing Pipeline a6c5e1ca5179b35831a55b34580bbd1a https://www.encodeproject.org/files/ENCFF478IMF/@@download/ENCFF478IMF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF416LRH bigWig fold change over control ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032SQZ, ENCFF161AYB, ENCFF257YRW 245895391 ENCODE Processing Pipeline f1e66800e7628766f9f348843449ae33 https://www.encodeproject.org/files/ENCFF416LRH/@@download/ENCFF416LRH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF954MNX bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032SQZ, ENCFF161AYB 4017745 ENCODE Processing Pipeline ecdf168ac071ca6829d0be3973069f39 https://www.encodeproject.org/files/ENCFF954MNX/@@download/ENCFF954MNX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF843TQZ bigBed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF718CML 10390403 ENCODE Processing Pipeline 658c459602e7089a90a0f657517fa146 https://www.encodeproject.org/files/ENCFF843TQZ/@@download/ENCFF843TQZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF481YHD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF398FBV 390588 ENCODE Processing Pipeline 275ee2574ffc65665261edd436b07038 https://www.encodeproject.org/files/ENCFF481YHD/@@download/ENCFF481YHD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF122PYD bigBed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF510WZL 6674441 ENCODE Processing Pipeline 8ce7115119d5f87ef14829ec206c8201 https://www.encodeproject.org/files/ENCFF122PYD/@@download/ENCFF122PYD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF902FND bigBed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF954MNX 9521531 ENCODE Processing Pipeline 01e32ca0c404f1b6b2dd96983082f330 https://www.encodeproject.org/files/ENCFF902FND/@@download/ENCFF902FND.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF394XBU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF542RLV 376357 ENCODE Processing Pipeline d12a099b7e79d56cafe822a7d2ed2b28 https://www.encodeproject.org/files/ENCFF394XBU/@@download/ENCFF394XBU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF240XIO bigWig fold change over control ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF034ZGA, ENCFF450GSC, ENCFF902AOQ 245603459 ENCODE Processing Pipeline 32e104e6015aef16033aec302ec19618 https://www.encodeproject.org/files/ENCFF240XIO/@@download/ENCFF240XIO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF579YOW bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450GSC, ENCFF902AOQ 2767319 ENCODE Processing Pipeline 05c12887e4709b37cdb0b0fc85bbde8e https://www.encodeproject.org/files/ENCFF579YOW/@@download/ENCFF579YOW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF051MWO bigBed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF528VUJ 10386992 ENCODE Processing Pipeline e66fae819208dd47142533c6c71bbedb https://www.encodeproject.org/files/ENCFF051MWO/@@download/ENCFF051MWO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF085CNS bed narrowPeak conservative idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF423LGE, ENCFF528VUJ, ENCFF579YOW 179654 ENCODE Processing Pipeline 3c055e3cd78f222aa85f1d14868b371b https://www.encodeproject.org/files/ENCFF085CNS/@@download/ENCFF085CNS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF385ZTD bed narrowPeak optimal idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF423LGE, ENCFF528VUJ, ENCFF579YOW 191681 ENCODE Processing Pipeline f182cd7d7ebf239fd97821b086b867f6 https://www.encodeproject.org/files/ENCFF385ZTD/@@download/ENCFF385ZTD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF012CVJ bigWig signal p-value ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF034ZGA, ENCFF902AOQ 132276672 ENCODE Processing Pipeline 2e6e574bfd14c20cfd95a014aa39f53b https://www.encodeproject.org/files/ENCFF012CVJ/@@download/ENCFF012CVJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF808GUB bigWig fold change over control ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450GSC, ENCFF902AOQ 139360603 ENCODE Processing Pipeline 47c17fbcf6716a3f1fba32295b34ef06 https://www.encodeproject.org/files/ENCFF808GUB/@@download/ENCFF808GUB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF865YOS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF385ZTD 400649 ENCODE Processing Pipeline 085d3593db838f506c1f23056b7c12e1 https://www.encodeproject.org/files/ENCFF865YOS/@@download/ENCFF865YOS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF733BXL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF085CNS 380957 ENCODE Processing Pipeline e007b720d3289d823df63c46b667555f https://www.encodeproject.org/files/ENCFF733BXL/@@download/ENCFF733BXL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF528VUJ bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF034ZGA, ENCFF450GSC, ENCFF902AOQ 4618947 ENCODE Processing Pipeline 91f045ee40bd7a90e1a6f39693133df9 https://www.encodeproject.org/files/ENCFF528VUJ/@@download/ENCFF528VUJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF124DIY bigWig signal p-value ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450GSC, ENCFF902AOQ 132855343 ENCODE Processing Pipeline 974568775e2416116862e05236049098 https://www.encodeproject.org/files/ENCFF124DIY/@@download/ENCFF124DIY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF996PHG bigWig signal p-value ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF034ZGA, ENCFF450GSC, ENCFF902AOQ 118418106 ENCODE Processing Pipeline 7818fe46c72d941a4573059f0dcec00d https://www.encodeproject.org/files/ENCFF996PHG/@@download/ENCFF996PHG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF423LGE bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF034ZGA, ENCFF902AOQ 4008844 ENCODE Processing Pipeline 2ea794c2e4e23e9d17c08f19ab942d6b https://www.encodeproject.org/files/ENCFF423LGE/@@download/ENCFF423LGE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF933OGO bigWig fold change over control ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF034ZGA, ENCFF902AOQ 131934563 ENCODE Processing Pipeline 03e5832acc2ddc44928bfbf9284779a3 https://www.encodeproject.org/files/ENCFF933OGO/@@download/ENCFF933OGO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF524GRH bigBed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579YOW 6545168 ENCODE Processing Pipeline e44d543d813a8fcfdbb2dbf007ddb520 https://www.encodeproject.org/files/ENCFF524GRH/@@download/ENCFF524GRH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF042FFA bigBed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF423LGE 9512388 ENCODE Processing Pipeline 9d873e2f6a4c98a9e4e4f6bd4ae521f0 https://www.encodeproject.org/files/ENCFF042FFA/@@download/ENCFF042FFA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF761XFH fastq reads ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 1 ENCFF037XQS 1973955501 Michael Snyder, Stanford 2129280870a8f5f0fe468f97eb95f537 SRA:SRR6213839 https://www.encodeproject.org/files/ENCFF761XFH/@@download/ENCFF761XFH.fastq.gz Illumina HiSeq 4000 /files/ENCFF098IHC/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF037XQS fastq reads ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 2 ENCFF761XFH 2342541863 Michael Snyder, Stanford f55fdc67cd32166e409c616420ed6718 SRA:SRR6213839 https://www.encodeproject.org/files/ENCFF037XQS/@@download/ENCFF037XQS.fastq.gz Illumina HiSeq 4000 /files/ENCFF005SGJ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF886CKY bam unfiltered alignments ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF037XQS, ENCFF761XFH, ENCFF807MUK 3991950189 ENCODE Processing Pipeline 82db75aac1efcafb020d5f4cb4db8a64 https://www.encodeproject.org/files/ENCFF886CKY/@@download/ENCFF886CKY.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF239CRJ bam alignments ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF037XQS, ENCFF761XFH, ENCFF807MUK 2606518344 ENCODE Processing Pipeline bdf46e3e423f5b9ad7dd3e55efc31b4a https://www.encodeproject.org/files/ENCFF239CRJ/@@download/ENCFF239CRJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF397TXF bam unfiltered alignments ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF037XQS, ENCFF643CGH, ENCFF761XFH 3992608971 ENCODE Processing Pipeline 95271b2662a7dff903894af2143299c0 https://www.encodeproject.org/files/ENCFF397TXF/@@download/ENCFF397TXF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF703WUV bam alignments ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF037XQS, ENCFF643CGH, ENCFF761XFH 2608975920 ENCODE Processing Pipeline 2ca78bd95a4f1b9c23cdde7a15b260a7 https://www.encodeproject.org/files/ENCFF703WUV/@@download/ENCFF703WUV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF142CZJ bigWig signal p-value ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF239CRJ, ENCFF992PUN 1202759732 ENCODE Processing Pipeline 529858c31d69957e447c681d46b1048c https://www.encodeproject.org/files/ENCFF142CZJ/@@download/ENCFF142CZJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF869ABU bigWig fold change over control ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF239CRJ, ENCFF992PUN 1098141698 ENCODE Processing Pipeline 56dca214056613b15fc97cbb02f7c7a1 https://www.encodeproject.org/files/ENCFF869ABU/@@download/ENCFF869ABU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF119VAB bigBed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF586WMF 13715230 ENCODE Processing Pipeline 25c159176273034d50f51acb133cf655 https://www.encodeproject.org/files/ENCFF119VAB/@@download/ENCFF119VAB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF225PML bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF735EHK 970966 ENCODE Processing Pipeline 9eff590d2498e94d0f5bc82ada893094 https://www.encodeproject.org/files/ENCFF225PML/@@download/ENCFF225PML.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF735EHK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF001TDO, ENCFF586WMF 551416 ENCODE Processing Pipeline 5df1132eb9e3683ddbd6ea3b5ccf3597 https://www.encodeproject.org/files/ENCFF735EHK/@@download/ENCFF735EHK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF586WMF bed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF239CRJ, ENCFF992PUN 6444911 ENCODE Processing Pipeline a498c601f0df7db09aee8724ad4dece5 https://www.encodeproject.org/files/ENCFF586WMF/@@download/ENCFF586WMF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF219NEB bigWig signal p-value ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF596ZPN, ENCFF703WUV 1318115316 ENCODE Processing Pipeline ca9d0f4d790872cd5adfb38dbdb82443 https://www.encodeproject.org/files/ENCFF219NEB/@@download/ENCFF219NEB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF817PJG bigWig fold change over control ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF596ZPN, ENCFF703WUV 1089980607 ENCODE Processing Pipeline f718ef60812903fb6f8cc0ec26068cd4 https://www.encodeproject.org/files/ENCFF817PJG/@@download/ENCFF817PJG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF190VZD bigBed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF505WZO 13680555 ENCODE Processing Pipeline ac3b43bc9a2d10e8974fba1af77b3007 https://www.encodeproject.org/files/ENCFF190VZD/@@download/ENCFF190VZD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF505WZO bed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF596ZPN, ENCFF703WUV 6405696 ENCODE Processing Pipeline ed842266038e2d56382d315514d5577e https://www.encodeproject.org/files/ENCFF505WZO/@@download/ENCFF505WZO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF725FJK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF419RSJ, ENCFF505WZO 536750 ENCODE Processing Pipeline 90d293ea98214b85b90908c222d86203 https://www.encodeproject.org/files/ENCFF725FJK/@@download/ENCFF725FJK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF094HVE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF725FJK 949508 ENCODE Processing Pipeline 4612ed2d3a104c28f95973ed70e6a401 https://www.encodeproject.org/files/ENCFF094HVE/@@download/ENCFF094HVE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF000WRP bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VGR 1482203 Michael Snyder, Stanford 32f83a4150c3818c90309d833b33131c https://www.encodeproject.org/files/ENCFF000WRP/@@download/ENCFF000WRP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRQ fastq reads ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1153946822 Michael Snyder, Stanford 6d1b17f82756cc75b8d54baea1f48980 https://www.encodeproject.org/files/ENCFF000WRQ/@@download/ENCFF000WRQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRS fastq reads ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 945578164 Michael Snyder, Stanford 4ddef354c0cceaf05c7469c557d6876f https://www.encodeproject.org/files/ENCFF000WRS/@@download/ENCFF000WRS.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRU bigWig signal ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 417681801 Michael Snyder, Stanford ca8dcdf709bb79cb141043efadfcd63d https://www.encodeproject.org/files/ENCFF000WRU/@@download/ENCFF000WRU.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WRV bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 1 535674911 Michael Snyder, Stanford c350f0a28752e8585517d9ef84094fe4 https://www.encodeproject.org/files/ENCFF000WRV/@@download/ENCFF000WRV.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WRW bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 1 597026093 Michael Snyder, Stanford 5f5618ceee1fe08687d9f1c31a849d66 https://www.encodeproject.org/files/ENCFF000WRW/@@download/ENCFF000WRW.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VGR bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 650553 Michael Snyder, Stanford f0607cd3374078033d7d884b8c17bde2 https://www.encodeproject.org/files/ENCFF001VGR/@@download/ENCFF001VGR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CQT bed narrowPeak optimal idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 174733 ENCODE Consortium Analysis Working Group 690e5693f30182418f145a0b807b6ddc https://www.encodeproject.org/files/ENCFF002CQT/@@download/ENCFF002CQT.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF510RHD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CQT 500591 ENCODE Consortium fd08b5131bcec80a7512ae3bf53c5d2b https://www.encodeproject.org/files/ENCFF510RHD/@@download/ENCFF510RHD.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF492JIH bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRS, ENCFF643CGH 795626097 ENCODE Processing Pipeline 389f546524435c3d224ffdacc9f2d6f9 https://www.encodeproject.org/files/ENCFF492JIH/@@download/ENCFF492JIH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF603TTS bam unfiltered alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRQ, ENCFF643CGH 1332515570 ENCODE Processing Pipeline b299275d0a637215e44d9cc3532c81ea https://www.encodeproject.org/files/ENCFF603TTS/@@download/ENCFF603TTS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF993BPP bam unfiltered alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRS, ENCFF643CGH 1101388854 ENCODE Processing Pipeline a6ad2f52218584e3aa96c93dc26de121 https://www.encodeproject.org/files/ENCFF993BPP/@@download/ENCFF993BPP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF598TAE bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRQ, ENCFF643CGH 956713616 ENCODE Processing Pipeline 1547820724d18aa399457404b25d0835 https://www.encodeproject.org/files/ENCFF598TAE/@@download/ENCFF598TAE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361ORC bam unfiltered alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRS, ENCFF807MUK 1097546349 ENCODE Processing Pipeline 8a0a44d4c8c9ee98a27358c47bce4300 https://www.encodeproject.org/files/ENCFF361ORC/@@download/ENCFF361ORC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF184LBH bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRS, ENCFF807MUK 796005861 ENCODE Processing Pipeline bf98ebe95f5982bdb5d3bbee57610af2 https://www.encodeproject.org/files/ENCFF184LBH/@@download/ENCFF184LBH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF390NEA bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRQ, ENCFF807MUK 957126298 ENCODE Processing Pipeline 787322b0d3f107476b2f9a1c08fdd6ea https://www.encodeproject.org/files/ENCFF390NEA/@@download/ENCFF390NEA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF661KZA bam unfiltered alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRQ, ENCFF807MUK 1327505600 ENCODE Processing Pipeline 3e006abe07b20738c955ec84329d7d9c https://www.encodeproject.org/files/ENCFF661KZA/@@download/ENCFF661KZA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039PNP bigWig signal p-value ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF598TAE 524814275 ENCODE Processing Pipeline e8d9a1974ca9adaef0e0da78ae403da9 https://www.encodeproject.org/files/ENCFF039PNP/@@download/ENCFF039PNP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF815JPM bigWig signal p-value ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF492JIH, ENCFF513EWK 603980704 ENCODE Processing Pipeline 4077e3c3fdc46b4854a583f92f818712 https://www.encodeproject.org/files/ENCFF815JPM/@@download/ENCFF815JPM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF171BHH bigWig signal p-value ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF492JIH, ENCFF513EWK, ENCFF598TAE 775843456 ENCODE Processing Pipeline 6724aecc0dbd002cae1c67fe1eb3501f https://www.encodeproject.org/files/ENCFF171BHH/@@download/ENCFF171BHH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF977BAU bigWig fold change over control ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF598TAE 522733206 ENCODE Processing Pipeline 071ae5baba324019b82378bf5ebc702d https://www.encodeproject.org/files/ENCFF977BAU/@@download/ENCFF977BAU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509LLY bigWig fold change over control ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF492JIH, ENCFF513EWK 454159495 ENCODE Processing Pipeline 0483dd21c77773708bac22f8ce8b037d https://www.encodeproject.org/files/ENCFF509LLY/@@download/ENCFF509LLY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF318NSO bigWig fold change over control ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF492JIH, ENCFF513EWK, ENCFF598TAE 802918546 ENCODE Processing Pipeline 2f4d8393f2fd4ce0aa78748bb79937ec https://www.encodeproject.org/files/ENCFF318NSO/@@download/ENCFF318NSO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF257WFX bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF598TAE 5056121 ENCODE Processing Pipeline 349a8a1480d507a2d98978fd493bd302 https://www.encodeproject.org/files/ENCFF257WFX/@@download/ENCFF257WFX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189AZN bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF492JIH, ENCFF513EWK 4976346 ENCODE Processing Pipeline c276b263097d6567611be9be101a9e8f https://www.encodeproject.org/files/ENCFF189AZN/@@download/ENCFF189AZN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF737FOL bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF492JIH, ENCFF513EWK, ENCFF598TAE 4426582 ENCODE Processing Pipeline d627d69b27cc3c9b4299a2b587fe0eb7 https://www.encodeproject.org/files/ENCFF737FOL/@@download/ENCFF737FOL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF204BLK bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF737FOL 10254625 ENCODE Processing Pipeline 2590084dd10c2490511d88d4ee1b0b17 https://www.encodeproject.org/files/ENCFF204BLK/@@download/ENCFF204BLK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388KOM bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF257WFX 11315650 ENCODE Processing Pipeline b434d54c838814bc97ae0e3ad9a95e51 https://www.encodeproject.org/files/ENCFF388KOM/@@download/ENCFF388KOM.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF087QMP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF809ZRK 368325 ENCODE Processing Pipeline 40ca19d9ec35cdaab23f5759090bb6b6 https://www.encodeproject.org/files/ENCFF087QMP/@@download/ENCFF087QMP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF245UXM bed narrowPeak optimal idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189AZN, ENCFF257WFX, ENCFF419RSJ, ENCFF737FOL 165834 ENCODE Processing Pipeline e94fbfd86b033f49986a2264c18fc411 https://www.encodeproject.org/files/ENCFF245UXM/@@download/ENCFF245UXM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF880PSW bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189AZN 11229566 ENCODE Processing Pipeline f4c56c4a04f12f24d78a3d404ae49c36 https://www.encodeproject.org/files/ENCFF880PSW/@@download/ENCFF880PSW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF809ZRK bed narrowPeak conservative idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189AZN, ENCFF257WFX, ENCFF419RSJ, ENCFF737FOL 164365 ENCODE Processing Pipeline 4f7b56a232ebb4e8746d50c6d518e420 https://www.encodeproject.org/files/ENCFF809ZRK/@@download/ENCFF809ZRK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732MSI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF245UXM 370904 ENCODE Processing Pipeline 22aa58421d618628f80b35d53a1e6e07 https://www.encodeproject.org/files/ENCFF732MSI/@@download/ENCFF732MSI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF585HGK bigWig signal p-value ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF390NEA, ENCFF599MVB 602890133 ENCODE Processing Pipeline 3c49d7d70bc0890eb59737edd97b70f7 https://www.encodeproject.org/files/ENCFF585HGK/@@download/ENCFF585HGK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713RMJ bigWig fold change over control ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF390NEA, ENCFF599MVB 534443463 ENCODE Processing Pipeline ef8f2fd9e8ee7264197bf06425138e1d https://www.encodeproject.org/files/ENCFF713RMJ/@@download/ENCFF713RMJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF766QCW bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF184LBH, ENCFF599MVB 4978700 ENCODE Processing Pipeline 719af19fa0da1ce29181bc2e62801e8f https://www.encodeproject.org/files/ENCFF766QCW/@@download/ENCFF766QCW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF110DVK bigWig signal p-value ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF184LBH, ENCFF599MVB 498275769 ENCODE Processing Pipeline 22da4e2ed83e0c9d940e6b6180759546 https://www.encodeproject.org/files/ENCFF110DVK/@@download/ENCFF110DVK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF358XSN bigWig signal p-value ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184LBH, ENCFF390NEA, ENCFF599MVB 776339419 ENCODE Processing Pipeline 8b35a5042e713e3ef4332f56091720d1 https://www.encodeproject.org/files/ENCFF358XSN/@@download/ENCFF358XSN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459EIV bigWig fold change over control ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184LBH, ENCFF390NEA, ENCFF599MVB 799935281 ENCODE Processing Pipeline ac1115f0723b656f05c28c56125deb78 https://www.encodeproject.org/files/ENCFF459EIV/@@download/ENCFF459EIV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF899KLR bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF357PEJ 10336864 ENCODE Processing Pipeline e0ef958a46720d0fb4cee8897d412ff2 https://www.encodeproject.org/files/ENCFF899KLR/@@download/ENCFF899KLR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF959HZT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF717RPL 366346 ENCODE Processing Pipeline f18a316f374420c25367b34ce428c525 https://www.encodeproject.org/files/ENCFF959HZT/@@download/ENCFF959HZT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF323CMU bigWig fold change over control ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF184LBH, ENCFF599MVB 455894478 ENCODE Processing Pipeline 6878a3891f1b3628ec3d99230d7fa039 https://www.encodeproject.org/files/ENCFF323CMU/@@download/ENCFF323CMU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF410KKV bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF390NEA, ENCFF599MVB 5099848 ENCODE Processing Pipeline f767cc915a573c8072e6994254633451 https://www.encodeproject.org/files/ENCFF410KKV/@@download/ENCFF410KKV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF717YYH bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF766QCW 11223702 ENCODE Processing Pipeline f02397174bcbf8b2d9c208ea57ab3f56 https://www.encodeproject.org/files/ENCFF717YYH/@@download/ENCFF717YYH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357PEJ bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184LBH, ENCFF390NEA, ENCFF599MVB 4481666 ENCODE Processing Pipeline 8ef3883dc6c49be9c06b6efce5bc4e05 https://www.encodeproject.org/files/ENCFF357PEJ/@@download/ENCFF357PEJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF116QSZ bigBed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF410KKV 11318740 ENCODE Processing Pipeline 64b90358afd8069d64a6a3c113e930ce https://www.encodeproject.org/files/ENCFF116QSZ/@@download/ENCFF116QSZ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF717RPL bed narrowPeak conservative idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF357PEJ, ENCFF410KKV, ENCFF766QCW 163308 ENCODE Processing Pipeline 8c0a5e680176d9fd310bd6997eec4984 https://www.encodeproject.org/files/ENCFF717RPL/@@download/ENCFF717RPL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF873ITO bed narrowPeak optimal idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF357PEJ, ENCFF410KKV, ENCFF766QCW 168315 ENCODE Processing Pipeline 3788a42ecff9429d70770a237a3a4eab https://www.encodeproject.org/files/ENCFF873ITO/@@download/ENCFF873ITO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF771COJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF873ITO 373954 ENCODE Processing Pipeline cbf659f56d33b46bc193c9254ef258f9 https://www.encodeproject.org/files/ENCFF771COJ/@@download/ENCFF771COJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364FLM bam unfiltered alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF445ODF, ENCFF799CJA, ENCFF807MUK 6417024614 ENCODE Processing Pipeline 662fff0ecc32ca5c6db9b3cecab2becd https://www.encodeproject.org/files/ENCFF364FLM/@@download/ENCFF364FLM.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF649VEA bam unfiltered alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF700HWC, ENCFF807MUK, ENCFF957SQJ 6313663547 ENCODE Processing Pipeline ba46d9f744e75a628c1ba5df84c2201c https://www.encodeproject.org/files/ENCFF649VEA/@@download/ENCFF649VEA.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF799CJA fastq reads ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF445ODF 2873520446 Michael Snyder, Stanford b9850685910692d45110a4b10a353bfe https://www.encodeproject.org/files/ENCFF799CJA/@@download/ENCFF799CJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF700HWC fastq reads ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF957SQJ 2864014002 Michael Snyder, Stanford 027def68a34c10f7fef2817b751d4c6b https://www.encodeproject.org/files/ENCFF700HWC/@@download/ENCFF700HWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF957SQJ fastq reads ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF700HWC 2820744878 Michael Snyder, Stanford 6c92193c12290db2d0fae0fa11191b3c https://www.encodeproject.org/files/ENCFF957SQJ/@@download/ENCFF957SQJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF445ODF fastq reads ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF799CJA 2916277081 Michael Snyder, Stanford d99b625aba78793f9606cb02a35ef13d https://www.encodeproject.org/files/ENCFF445ODF/@@download/ENCFF445ODF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF381LRH bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF445ODF, ENCFF799CJA, ENCFF807MUK 5257445536 ENCODE Processing Pipeline 268f3450731c5fc3a534d12d7d0f240e https://www.encodeproject.org/files/ENCFF381LRH/@@download/ENCFF381LRH.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF092RQT bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF700HWC, ENCFF807MUK, ENCFF957SQJ 5189924704 ENCODE Processing Pipeline 98255c44c05994d61375515c15b3cf34 https://www.encodeproject.org/files/ENCFF092RQT/@@download/ENCFF092RQT.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF430VJI bigWig signal p-value ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF381LRH, ENCFF449NNE 1001488046 ENCODE Processing Pipeline bb0ce57897923b230b6ac664dc756bba https://www.encodeproject.org/files/ENCFF430VJI/@@download/ENCFF430VJI.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF104UWQ bigWig signal p-value ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF092RQT, ENCFF999EQI 1139663088 ENCODE Processing Pipeline dda783bdb5eac5873563279eabff3472 https://www.encodeproject.org/files/ENCFF104UWQ/@@download/ENCFF104UWQ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF572ZDX bigWig signal p-value ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF092RQT, ENCFF381LRH, ENCFF449NNE, ENCFF999EQI 2027727275 ENCODE Processing Pipeline 2f37fa219406843aa9aa3060fad297ae https://www.encodeproject.org/files/ENCFF572ZDX/@@download/ENCFF572ZDX.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF758NIN bigWig fold change over control ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF381LRH, ENCFF449NNE 1210302928 ENCODE Processing Pipeline 49332d22187f9e8a969c7b1d4f3dd378 https://www.encodeproject.org/files/ENCFF758NIN/@@download/ENCFF758NIN.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF813RJH bigWig fold change over control ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF092RQT, ENCFF999EQI 1104855225 ENCODE Processing Pipeline 302bf03dc9d1440e349baff75c02e765 https://www.encodeproject.org/files/ENCFF813RJH/@@download/ENCFF813RJH.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF430NMK bigWig fold change over control ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF092RQT, ENCFF381LRH, ENCFF449NNE, ENCFF999EQI 2108394779 ENCODE Processing Pipeline a53198653d998d468d62d0b06a653498 https://www.encodeproject.org/files/ENCFF430NMK/@@download/ENCFF430NMK.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF567TXV bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF381LRH, ENCFF449NNE 5896995 ENCODE Processing Pipeline f01a62ffbe181b6cfa5e0c361b7e6f5d https://www.encodeproject.org/files/ENCFF567TXV/@@download/ENCFF567TXV.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF059FYG bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF092RQT, ENCFF381LRH, ENCFF449NNE, ENCFF999EQI 6983263 ENCODE Processing Pipeline 3fff7ad3b035fb683f0286e170d66f63 https://www.encodeproject.org/files/ENCFF059FYG/@@download/ENCFF059FYG.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF843HVE bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF092RQT, ENCFF999EQI 5867098 ENCODE Processing Pipeline 391921cb41d51a952968e8ff39b65428 https://www.encodeproject.org/files/ENCFF843HVE/@@download/ENCFF843HVE.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF066JAT bigBed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF567TXV 11324154 ENCODE Processing Pipeline 995e282fa3c8d210e7b07af781bc6687 https://www.encodeproject.org/files/ENCFF066JAT/@@download/ENCFF066JAT.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF176TXJ bigBed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF843HVE 11365492 ENCODE Processing Pipeline 63683c32e6bd6d49fcad63fcc2f5035a https://www.encodeproject.org/files/ENCFF176TXJ/@@download/ENCFF176TXJ.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF285ABG bigBed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF059FYG 11356195 ENCODE Processing Pipeline 1aa74c62d7f8a718a7e226f089b77ab4 https://www.encodeproject.org/files/ENCFF285ABG/@@download/ENCFF285ABG.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF194ICP bigBed narrowPeak conservative idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF085ENX 66215 ENCODE Processing Pipeline 17ab57222bd52ec0e482aa0e08e3f94b https://www.encodeproject.org/files/ENCFF194ICP/@@download/ENCFF194ICP.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF085ENX bed narrowPeak conservative idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF059FYG, ENCFF567TXV, ENCFF843HVE 9661 ENCODE Processing Pipeline a8f58b117c6d9f731fe05c265aae232e https://www.encodeproject.org/files/ENCFF085ENX/@@download/ENCFF085ENX.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF653WZE bigBed narrowPeak optimal idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF449ITJ 98148 ENCODE Processing Pipeline e850fb4d19399b7c7640178effaf8376 https://www.encodeproject.org/files/ENCFF653WZE/@@download/ENCFF653WZE.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF449ITJ bed narrowPeak optimal idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF059FYG, ENCFF567TXV, ENCFF843HVE 29395 ENCODE Processing Pipeline aa4214966ef0c06f1db3c39a2f54d1cf https://www.encodeproject.org/files/ENCFF449ITJ/@@download/ENCFF449ITJ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF709URW bam unfiltered alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF445ODF, ENCFF643CGH, ENCFF799CJA 6432268506 ENCODE Processing Pipeline f4efdac7d979e119219b82870930daf4 https://www.encodeproject.org/files/ENCFF709URW/@@download/ENCFF709URW.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF857TCB bam unfiltered alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF700HWC, ENCFF957SQJ 6328558975 ENCODE Processing Pipeline 3b6ef2650ce9c23b24ac65f0468c5caf https://www.encodeproject.org/files/ENCFF857TCB/@@download/ENCFF857TCB.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF871QFB bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF445ODF, ENCFF643CGH, ENCFF799CJA 5274261016 ENCODE Processing Pipeline 3dbb44aad9251f546eac290b2ea5977a https://www.encodeproject.org/files/ENCFF871QFB/@@download/ENCFF871QFB.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF904HKQ bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF700HWC, ENCFF957SQJ 5206630767 ENCODE Processing Pipeline c968a695f639f0f80b63b9be2dcca07e https://www.encodeproject.org/files/ENCFF904HKQ/@@download/ENCFF904HKQ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF318IRU bigWig signal p-value ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF190EPQ, ENCFF871QFB 963279137 ENCODE Processing Pipeline 7f02613c6f867b34c7470d3a41d993ab https://www.encodeproject.org/files/ENCFF318IRU/@@download/ENCFF318IRU.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF342EHF bigWig signal p-value ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF904HKQ, ENCFF950AXC 1214499272 ENCODE Processing Pipeline 58814eefac391bc573c5a4364ba47007 https://www.encodeproject.org/files/ENCFF342EHF/@@download/ENCFF342EHF.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF769QJK bigWig signal p-value ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF190EPQ, ENCFF871QFB, ENCFF904HKQ, ENCFF950AXC 2025293004 ENCODE Processing Pipeline 64ad9628ac424e3bafa7d98890a0a46f https://www.encodeproject.org/files/ENCFF769QJK/@@download/ENCFF769QJK.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF871KPS bigWig fold change over control ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF190EPQ, ENCFF871QFB 1202037290 ENCODE Processing Pipeline d0c74b27c628398232a667e9166714e9 https://www.encodeproject.org/files/ENCFF871KPS/@@download/ENCFF871KPS.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF105NID bigWig fold change over control ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF904HKQ, ENCFF950AXC 1106838932 ENCODE Processing Pipeline 08e3cc971dd066d71350121ccc62dece https://www.encodeproject.org/files/ENCFF105NID/@@download/ENCFF105NID.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF811AVZ bigWig fold change over control ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF190EPQ, ENCFF871QFB, ENCFF904HKQ, ENCFF950AXC 2097314208 ENCODE Processing Pipeline 78454b8384be399d1d5fee81b9cd6fba https://www.encodeproject.org/files/ENCFF811AVZ/@@download/ENCFF811AVZ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF269KPU bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF190EPQ, ENCFF871QFB, ENCFF904HKQ, ENCFF950AXC 6921024 ENCODE Processing Pipeline 01f8113f57802a175fe56674745c4ece https://www.encodeproject.org/files/ENCFF269KPU/@@download/ENCFF269KPU.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF801BQO bigBed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF663QTP 11328754 ENCODE Processing Pipeline bf246c6a5fe1dbe5081c84d8bb2ec583 https://www.encodeproject.org/files/ENCFF801BQO/@@download/ENCFF801BQO.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF663QTP bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF190EPQ, ENCFF871QFB 5725635 ENCODE Processing Pipeline ab23d46adc40da7103b5637eaa9da685 https://www.encodeproject.org/files/ENCFF663QTP/@@download/ENCFF663QTP.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF165OLC bigBed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF703QJG 11355816 ENCODE Processing Pipeline d1100da920eb088043d4d6784990139f https://www.encodeproject.org/files/ENCFF165OLC/@@download/ENCFF165OLC.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF658GLG bed narrowPeak conservative idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF269KPU, ENCFF419RSJ, ENCFF663QTP, ENCFF703QJG 15743 ENCODE Processing Pipeline 2e4434f8b521c132e39da43dec6bd7e2 https://www.encodeproject.org/files/ENCFF658GLG/@@download/ENCFF658GLG.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF703QJG bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF904HKQ, ENCFF950AXC 5656295 ENCODE Processing Pipeline dfc89ab1f3ba6e8cb99c824e1840a040 https://www.encodeproject.org/files/ENCFF703QJG/@@download/ENCFF703QJG.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF190MFT bigBed narrowPeak optimal idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF882RPA 130073 ENCODE Processing Pipeline d7a6c01b6525947fd465e281ddf76ac4 https://www.encodeproject.org/files/ENCFF190MFT/@@download/ENCFF190MFT.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF316WXU bigBed narrowPeak conservative idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF658GLG 113004 ENCODE Processing Pipeline cd9fa69d0fe539f9884a66197df99ec1 https://www.encodeproject.org/files/ENCFF316WXU/@@download/ENCFF316WXU.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF522AIB bigBed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF269KPU 11358005 ENCODE Processing Pipeline f96ae11fd211c4f6af962803bb23335a https://www.encodeproject.org/files/ENCFF522AIB/@@download/ENCFF522AIB.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF882RPA bed narrowPeak optimal idr thresholded peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF269KPU, ENCFF419RSJ, ENCFF663QTP, ENCFF703QJG 36503 ENCODE Processing Pipeline c39817004d204163273099a7aef015d1 https://www.encodeproject.org/files/ENCFF882RPA/@@download/ENCFF882RPA.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF408TVU fastq reads ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF834WKY 3032067915 Richard Myers, HAIB 6cd5f9c9c683b6bbb3e605fedc2e90a7 SRA:SRR6212903 https://www.encodeproject.org/files/ENCFF408TVU/@@download/ENCFF408TVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF285LRT/ released antibody characterized with exemption missing control alignments ENCFF834WKY fastq reads ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF408TVU 3158074000 Richard Myers, HAIB b2dce80dcfeb0ce7b3d3145af6c98441 SRA:SRR6212903 https://www.encodeproject.org/files/ENCFF834WKY/@@download/ENCFF834WKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF568XFG/ released antibody characterized with exemption missing control alignments ENCFF690CAC bam unfiltered alignments ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF408TVU, ENCFF807MUK, ENCFF834WKY 7344037017 ENCODE Processing Pipeline 83a789464bd215be35672e32eeee67cc https://www.encodeproject.org/files/ENCFF690CAC/@@download/ENCFF690CAC.bam hg19 released antibody characterized with exemption missing control alignments ENCFF213HXD bam unfiltered alignments ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF408TVU, ENCFF643CGH, ENCFF834WKY 7377785667 ENCODE Processing Pipeline 341637e75e5ec413200f867264574c50 https://www.encodeproject.org/files/ENCFF213HXD/@@download/ENCFF213HXD.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF753CCI bam alignments ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF408TVU, ENCFF643CGH, ENCFF834WKY 5537528425 ENCODE Processing Pipeline 5f6529c0cd53ccf8c2ff108b0c404258 https://www.encodeproject.org/files/ENCFF753CCI/@@download/ENCFF753CCI.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF457XBH bam alignments ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF408TVU, ENCFF807MUK, ENCFF834WKY 5530209001 ENCODE Processing Pipeline d83d48e6df41c9b22734f1600a980ace https://www.encodeproject.org/files/ENCFF457XBH/@@download/ENCFF457XBH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF426NMH bigWig signal p-value ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF457XBH 1950444623 ENCODE Processing Pipeline d3527660810c42f41717d2ecdc8d3c60 https://www.encodeproject.org/files/ENCFF426NMH/@@download/ENCFF426NMH.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF610UUP bigWig fold change over control ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF457XBH 1833741930 ENCODE Processing Pipeline bdfe5d531cbf922a1fe736d69f8f0f15 https://www.encodeproject.org/files/ENCFF610UUP/@@download/ENCFF610UUP.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF551NXL bed narrowPeak peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF457XBH 6818115 ENCODE Processing Pipeline 6bcc55f36d892316fbe4013f95cff52e https://www.encodeproject.org/files/ENCFF551NXL/@@download/ENCFF551NXL.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF269VDY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF551NXL 2456 ENCODE Processing Pipeline dca1b8235ec513453264976c4f4b347d https://www.encodeproject.org/files/ENCFF269VDY/@@download/ENCFF269VDY.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF279ZHM bigBed narrowPeak peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF551NXL 11661688 ENCODE Processing Pipeline 8e9d3fba724ff2939788f56a1b620a50 https://www.encodeproject.org/files/ENCFF279ZHM/@@download/ENCFF279ZHM.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF184MII bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF269VDY 75013 ENCODE Processing Pipeline 8b81cb850d93e5af5bb8d4be7e4b8803 https://www.encodeproject.org/files/ENCFF184MII/@@download/ENCFF184MII.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF331CAB bigWig fold change over control ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF753CCI 1854453003 ENCODE Processing Pipeline 4b839314468e296b85e71fec05dd8e22 https://www.encodeproject.org/files/ENCFF331CAB/@@download/ENCFF331CAB.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF555CQW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF085MWN 80423 ENCODE Processing Pipeline 563a00cb0d74a2d04b53bbeea0725bcb https://www.encodeproject.org/files/ENCFF555CQW/@@download/ENCFF555CQW.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF020SME bigBed narrowPeak peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF129BFA 11675931 ENCODE Processing Pipeline 4a6878ac1d8ba35ed6d9b8800dbd2c88 https://www.encodeproject.org/files/ENCFF020SME/@@download/ENCFF020SME.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF085MWN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF129BFA, ENCFF419RSJ 1855 ENCODE Processing Pipeline bd67dc1b9a4987b21c4a2a2a0d289e11 https://www.encodeproject.org/files/ENCFF085MWN/@@download/ENCFF085MWN.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF627PIV bigWig signal p-value ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF753CCI 1966424755 ENCODE Processing Pipeline 840eef1c2b60561a80fd9c3e41ac2426 https://www.encodeproject.org/files/ENCFF627PIV/@@download/ENCFF627PIV.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF129BFA bed narrowPeak peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF753CCI 6828781 ENCODE Processing Pipeline 1383e1e9d1675fa1e9ee3ce8d1eb96a3 https://www.encodeproject.org/files/ENCFF129BFA/@@download/ENCFF129BFA.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF496IOG bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF807MUK, ENCFF881QTR 6864559879 ENCODE Processing Pipeline 03ebe4e19973acd06702a8e782d640f4 https://www.encodeproject.org/files/ENCFF496IOG/@@download/ENCFF496IOG.bam hg19 released ENCFF611NOA bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF724KPM, ENCFF807MUK, ENCFF863GNT 5599833727 ENCODE Processing Pipeline e9351d994d1c5ef8763401064c05914f https://www.encodeproject.org/files/ENCFF611NOA/@@download/ENCFF611NOA.bam hg19 released ENCFF863GNT fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF724KPM 2639663861 Michael Snyder, Stanford b4c3f44057f989824c260a2555ee89d9 SRA:SRR5111424 https://www.encodeproject.org/files/ENCFF863GNT/@@download/ENCFF863GNT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released ENCFF724KPM fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF863GNT 2569325379 Michael Snyder, Stanford 6501700db6a387d5a8db78d8341d099a SRA:SRR5111424 https://www.encodeproject.org/files/ENCFF724KPM/@@download/ENCFF724KPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released ENCFF485UKV fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF881QTR 3185240813 Michael Snyder, Stanford 3128a3b123cda01cede94b1744be1330 SRA:SRR5111423 https://www.encodeproject.org/files/ENCFF485UKV/@@download/ENCFF485UKV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released ENCFF881QTR fastq reads ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF485UKV 3260774220 Michael Snyder, Stanford c6c0bdf602521d8c9ee519e8d7e43658 SRA:SRR5111423 https://www.encodeproject.org/files/ENCFF881QTR/@@download/ENCFF881QTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released ENCFF784FIO bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF724KPM, ENCFF807MUK, ENCFF863GNT 4350279725 ENCODE Processing Pipeline 1cd169e25c4bb9eadc235cc5315e89b8 https://www.encodeproject.org/files/ENCFF784FIO/@@download/ENCFF784FIO.bam hg19 released ENCFF282JRK bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF485UKV, ENCFF807MUK, ENCFF881QTR 5495085832 ENCODE Processing Pipeline 872d6a355a1d5f314dd2d91ce7780448 https://www.encodeproject.org/files/ENCFF282JRK/@@download/ENCFF282JRK.bam hg19 released ENCFF399VDI bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 1129249236 ENCODE Processing Pipeline 57d3c889e6d1a4b7c1d7a246e00dfb1c https://www.encodeproject.org/files/ENCFF399VDI/@@download/ENCFF399VDI.bigWig hg19 released ENCFF769NXS bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF282JRK, ENCFF784FIO, ENCFF941TZZ 1481023593 ENCODE Processing Pipeline 14ae29e0bbafa03326e8e7637cb0c570 https://www.encodeproject.org/files/ENCFF769NXS/@@download/ENCFF769NXS.bigWig hg19 released ENCFF333QOF bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 1388018131 ENCODE Processing Pipeline 8ae0f34f643e5e3cf8a6ca69f3d6e5b3 https://www.encodeproject.org/files/ENCFF333QOF/@@download/ENCFF333QOF.bigWig hg19 released ENCFF055NJR bed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF174HNI, ENCFF211SVA, ENCFF635TWM 704612 ENCODE Processing Pipeline 983d50b2025e7cdf2bf584b28e2275d6 https://www.encodeproject.org/files/ENCFF055NJR/@@download/ENCFF055NJR.bed.gz hg19 released ENCFF435VUV bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 1006318522 ENCODE Processing Pipeline 5238fdc69153a415425e1edabae6f293 https://www.encodeproject.org/files/ENCFF435VUV/@@download/ENCFF435VUV.bigWig hg19 released ENCFF039YMB bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF211SVA 12893135 ENCODE Processing Pipeline 0788b402bd28c5da7b7178f3f93c2e60 https://www.encodeproject.org/files/ENCFF039YMB/@@download/ENCFF039YMB.bigBed hg19 released ENCFF710VQZ bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 1155362310 ENCODE Processing Pipeline e5e113f5febf58fc8379badc78366a00 https://www.encodeproject.org/files/ENCFF710VQZ/@@download/ENCFF710VQZ.bigWig hg19 released ENCFF635TWM bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF282JRK, ENCFF784FIO, ENCFF941TZZ 7225063 ENCODE Processing Pipeline d49e7f439f2c62531e91369254d32009 https://www.encodeproject.org/files/ENCFF635TWM/@@download/ENCFF635TWM.bed.gz hg19 released ENCFF081XCC bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF635TWM 12779848 ENCODE Processing Pipeline cdaef61794cf092a33b32b7a0bb861f4 https://www.encodeproject.org/files/ENCFF081XCC/@@download/ENCFF081XCC.bigBed hg19 released ENCFF243AQY bigBed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF257OPZ 1451228 ENCODE Processing Pipeline bcb4af347fcf2f39cc6cf43f9ec0a1cc https://www.encodeproject.org/files/ENCFF243AQY/@@download/ENCFF243AQY.bigBed hg19 released ENCFF601VCM bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF282JRK, ENCFF784FIO, ENCFF941TZZ 1871597241 ENCODE Processing Pipeline 0473e2ed911c1cfd615db53d285bbad7 https://www.encodeproject.org/files/ENCFF601VCM/@@download/ENCFF601VCM.bigWig hg19 released ENCFF174HNI bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 6989177 ENCODE Processing Pipeline e0dc0395c4fcbd87d364ab2b3661eced https://www.encodeproject.org/files/ENCFF174HNI/@@download/ENCFF174HNI.bed.gz hg19 released ENCFF211SVA bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 6924816 ENCODE Processing Pipeline 5528a183e778bf623e56668345a1f83d https://www.encodeproject.org/files/ENCFF211SVA/@@download/ENCFF211SVA.bed.gz hg19 released ENCFF765EBK bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF174HNI 12832601 ENCODE Processing Pipeline c5ab169fc7fc20d0f381e34cd5c6305b https://www.encodeproject.org/files/ENCFF765EBK/@@download/ENCFF765EBK.bigBed hg19 released ENCFF257OPZ bed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF174HNI, ENCFF211SVA, ENCFF635TWM 678523 ENCODE Processing Pipeline 9abb0314463e065dfc4d65defa687423 https://www.encodeproject.org/files/ENCFF257OPZ/@@download/ENCFF257OPZ.bed.gz hg19 released ENCFF774BQI bigBed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF055NJR 1504226 ENCODE Processing Pipeline 21dfb5512ab1669f20dc9d75e1b9c9b4 https://www.encodeproject.org/files/ENCFF774BQI/@@download/ENCFF774BQI.bigBed hg19 released ENCFF384CXB bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF724KPM, ENCFF863GNT 5601295288 ENCODE Processing Pipeline 5cd74e01e8d76f936d1609cf6c48dfb2 https://www.encodeproject.org/files/ENCFF384CXB/@@download/ENCFF384CXB.bam GRCh38 released ENCFF727ATN bam unfiltered alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF643CGH, ENCFF881QTR 6866495846 ENCODE Processing Pipeline fe4f563a5620eda6dd795d56f942787a https://www.encodeproject.org/files/ENCFF727ATN/@@download/ENCFF727ATN.bam GRCh38 released ENCFF382USC bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF724KPM, ENCFF863GNT 4357820758 ENCODE Processing Pipeline 378d6ff843d692113680cdbeeb59bce5 https://www.encodeproject.org/files/ENCFF382USC/@@download/ENCFF382USC.bam GRCh38 released ENCFF722EAP bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF643CGH, ENCFF881QTR 5503884084 ENCODE Processing Pipeline fc0ff15a094b95d221c1df6a8d4d917b https://www.encodeproject.org/files/ENCFF722EAP/@@download/ENCFF722EAP.bam GRCh38 released ENCFF527OCV bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF722EAP, ENCFF879YMO 1383067557 ENCODE Processing Pipeline 504a80a60785ddf37e0374bddb261aa2 https://www.encodeproject.org/files/ENCFF527OCV/@@download/ENCFF527OCV.bigWig GRCh38 released ENCFF415UPO bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF382USC, ENCFF879YMO 1108513738 ENCODE Processing Pipeline 606cf04cbb0a003ea7ba84f11b02b5e2 https://www.encodeproject.org/files/ENCFF415UPO/@@download/ENCFF415UPO.bigWig GRCh38 released ENCFF506WXJ bigWig signal p-value ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF382USC, ENCFF722EAP, ENCFF879YMO 1510908176 ENCODE Processing Pipeline 1534c029eb8c744fbdbf381cd0cb2c40 https://www.encodeproject.org/files/ENCFF506WXJ/@@download/ENCFF506WXJ.bigWig GRCh38 released ENCFF947NHL bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF722EAP, ENCFF879YMO 1333248021 ENCODE Processing Pipeline c940e6e338174c3256c91afc9b74116e https://www.encodeproject.org/files/ENCFF947NHL/@@download/ENCFF947NHL.bigWig GRCh38 released ENCFF481AJQ bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF382USC, ENCFF879YMO 1165874982 ENCODE Processing Pipeline f21f7505a8cb11b7e73f48c741b6ddac https://www.encodeproject.org/files/ENCFF481AJQ/@@download/ENCFF481AJQ.bigWig GRCh38 released ENCFF355PIJ bigWig fold change over control ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF382USC, ENCFF722EAP, ENCFF879YMO 1905802489 ENCODE Processing Pipeline acaa6ad4cfeb2271ec74dcb3d738139b https://www.encodeproject.org/files/ENCFF355PIJ/@@download/ENCFF355PIJ.bigWig GRCh38 released ENCFF444AXF bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF722EAP, ENCFF879YMO 6892632 ENCODE Processing Pipeline d6139e501b7b802889adc46eb9b04285 https://www.encodeproject.org/files/ENCFF444AXF/@@download/ENCFF444AXF.bed.gz GRCh38 released ENCFF021IFH bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF382USC, ENCFF879YMO 6910991 ENCODE Processing Pipeline 82a1d18d4f9fc89d345d426eb866048a https://www.encodeproject.org/files/ENCFF021IFH/@@download/ENCFF021IFH.bed.gz GRCh38 released ENCFF184KVH bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF382USC, ENCFF722EAP, ENCFF879YMO 7280057 ENCODE Processing Pipeline 7daaa03d4497b5569918616b21ca1002 https://www.encodeproject.org/files/ENCFF184KVH/@@download/ENCFF184KVH.bed.gz GRCh38 released ENCFF743CPC bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF444AXF 12769391 ENCODE Processing Pipeline 9124495d99e8bef94ea75456db09f6d3 https://www.encodeproject.org/files/ENCFF743CPC/@@download/ENCFF743CPC.bigBed GRCh38 released ENCFF256YZH bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF021IFH 12954620 ENCODE Processing Pipeline 16b6f53632c7a7cc61b342c3ab60b04d https://www.encodeproject.org/files/ENCFF256YZH/@@download/ENCFF256YZH.bigBed GRCh38 released ENCFF788YLM bigBed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF184KVH 12845828 ENCODE Processing Pipeline 5daa8ac0f6093111a07beb9bae154172 https://www.encodeproject.org/files/ENCFF788YLM/@@download/ENCFF788YLM.bigBed GRCh38 released ENCFF400GKD bed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF021IFH, ENCFF184KVH, ENCFF419RSJ, ENCFF444AXF 700911 ENCODE Processing Pipeline b2cf599066ba8970699e5c989c5a9ed0 https://www.encodeproject.org/files/ENCFF400GKD/@@download/ENCFF400GKD.bed.gz GRCh38 released ENCFF857RRH bigBed narrowPeak conservative idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF400GKD 1485065 ENCODE Processing Pipeline 5b9eb51aa8d4d369875079b450ba5d57 https://www.encodeproject.org/files/ENCFF857RRH/@@download/ENCFF857RRH.bigBed GRCh38 released ENCFF811VEN bed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF021IFH, ENCFF184KVH, ENCFF419RSJ, ENCFF444AXF 707718 ENCODE Processing Pipeline 5c2306896a7fa321eecaaebb02b29740 https://www.encodeproject.org/files/ENCFF811VEN/@@download/ENCFF811VEN.bed.gz GRCh38 released ENCFF949VNS bigBed narrowPeak optimal idr thresholded peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF811VEN 1508923 ENCODE Processing Pipeline 928bbc2c520c109970cb1a87319110cf https://www.encodeproject.org/files/ENCFF949VNS/@@download/ENCFF949VNS.bigBed GRCh38 released ENCFF355QDR fastq reads ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF532FBK 2483079574 Richard Myers, HAIB bea7867dcc070ff0f7b17f70b20befec SRA:SRR6213014 https://www.encodeproject.org/files/ENCFF355QDR/@@download/ENCFF355QDR.fastq.gz Illumina HiSeq 2000 /files/ENCFF953GZP/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF532FBK fastq reads ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF355QDR 2598823525 Richard Myers, HAIB 42fcee5b47b8726d875067677a74ddee SRA:SRR6213014 https://www.encodeproject.org/files/ENCFF532FBK/@@download/ENCFF532FBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF067POA/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF020FAT bam alignments ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF355QDR, ENCFF532FBK, ENCFF807MUK 3821928126 ENCODE Processing Pipeline 4d960d851644471ea36efb7e091b8bac https://www.encodeproject.org/files/ENCFF020FAT/@@download/ENCFF020FAT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF254JUN bam unfiltered alignments ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF355QDR, ENCFF532FBK, ENCFF643CGH 5837430083 ENCODE Processing Pipeline 77a18c89bcd247a2019d78de26b5e97a https://www.encodeproject.org/files/ENCFF254JUN/@@download/ENCFF254JUN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF027LKP bam unfiltered alignments ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF355QDR, ENCFF532FBK, ENCFF807MUK 5829033355 ENCODE Processing Pipeline ceeae2c8b41a7442d62998ad2aa1740b https://www.encodeproject.org/files/ENCFF027LKP/@@download/ENCFF027LKP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF265RTL bam alignments ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF355QDR, ENCFF532FBK, ENCFF643CGH 3823620422 ENCODE Processing Pipeline 1a7b31f412358c53e0c1ec21c231da9f https://www.encodeproject.org/files/ENCFF265RTL/@@download/ENCFF265RTL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF983ENG bigWig signal p-value ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF265RTL 1565070069 ENCODE Processing Pipeline a5ce65146845c1ba2ec4932a3e08460e https://www.encodeproject.org/files/ENCFF983ENG/@@download/ENCFF983ENG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF007GYM bigWig fold change over control ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF265RTL 1345038816 ENCODE Processing Pipeline 8912307cd9cbecabffee6bdb9ffb9888 https://www.encodeproject.org/files/ENCFF007GYM/@@download/ENCFF007GYM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF240CHW bed narrowPeak peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF265RTL 7048920 ENCODE Processing Pipeline a73ac76000421fc4823fe02c0c367f7c https://www.encodeproject.org/files/ENCFF240CHW/@@download/ENCFF240CHW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF846RCM bigBed narrowPeak peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF240CHW 10777611 ENCODE Processing Pipeline 12c3fd776aa542cb5f87a164e86c4cd8 https://www.encodeproject.org/files/ENCFF846RCM/@@download/ENCFF846RCM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF616UBW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF783HDF 72473 ENCODE Processing Pipeline 83da5b47ed70631c0fd71d75a267ee70 https://www.encodeproject.org/files/ENCFF616UBW/@@download/ENCFF616UBW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF783HDF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF240CHW, ENCFF419RSJ 16989 ENCODE Processing Pipeline ee56cc46eb6cdd5aa92f9cc67ce75747 https://www.encodeproject.org/files/ENCFF783HDF/@@download/ENCFF783HDF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF199RTR bigWig signal p-value ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF020FAT 1658643320 ENCODE Processing Pipeline 5c65233c2b2e695624da5c9997ce96de https://www.encodeproject.org/files/ENCFF199RTR/@@download/ENCFF199RTR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF009OHL bigWig fold change over control ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF020FAT 1342719483 ENCODE Processing Pipeline 3963f797a9710413fa066e441c490bf6 https://www.encodeproject.org/files/ENCFF009OHL/@@download/ENCFF009OHL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF358ADA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF362CPR 18062 ENCODE Processing Pipeline 093fb1152c273dc656fd7b4656d0cd5e https://www.encodeproject.org/files/ENCFF358ADA/@@download/ENCFF358ADA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF393BSZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF358ADA 72509 ENCODE Processing Pipeline b623a0861af668721c6a5288f9f9ebae https://www.encodeproject.org/files/ENCFF393BSZ/@@download/ENCFF393BSZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF242NQJ bigBed narrowPeak peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF362CPR 10757602 ENCODE Processing Pipeline 175c2069b68f300bdcb6dc11d2ab7747 https://www.encodeproject.org/files/ENCFF242NQJ/@@download/ENCFF242NQJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF362CPR bed narrowPeak peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF020FAT 7041585 ENCODE Processing Pipeline 07fc3b79cc95f0ed5dbfb696fde20b65 https://www.encodeproject.org/files/ENCFF362CPR/@@download/ENCFF362CPR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF308YUI fastq reads ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF170LID 1462905657 Richard Myers, HAIB 89be5eb6b23aace4c32ac3719b26db8a SRA:SRR6214091 https://www.encodeproject.org/files/ENCFF308YUI/@@download/ENCFF308YUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF388FAT/ released antibody characterized with exemption missing control alignments ENCFF170LID fastq reads ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF308YUI 1496622893 Richard Myers, HAIB bb100351198ba6c2d9280057f060c0b8 SRA:SRR6214091 https://www.encodeproject.org/files/ENCFF170LID/@@download/ENCFF170LID.fastq.gz Illumina HiSeq 2000 /files/ENCFF413RZV/ released antibody characterized with exemption missing control alignments ENCFF834YTR bam unfiltered alignments ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF170LID, ENCFF308YUI, ENCFF807MUK 3515127870 ENCODE Processing Pipeline dca9e5771c233cabaf8be3e847ef5ada https://www.encodeproject.org/files/ENCFF834YTR/@@download/ENCFF834YTR.bam hg19 released antibody characterized with exemption missing control alignments ENCFF254YDK bam unfiltered alignments ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF170LID, ENCFF308YUI, ENCFF643CGH 3529607717 ENCODE Processing Pipeline 9c0e56b08040ff3c3204e363e4b92ff7 https://www.encodeproject.org/files/ENCFF254YDK/@@download/ENCFF254YDK.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF931BEZ bam alignments ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF170LID, ENCFF308YUI, ENCFF807MUK 2653921102 ENCODE Processing Pipeline 86723a89f6676501d59b9b3d15bf9a14 https://www.encodeproject.org/files/ENCFF931BEZ/@@download/ENCFF931BEZ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF397ADX bam alignments ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF170LID, ENCFF308YUI, ENCFF643CGH 2656614389 ENCODE Processing Pipeline 54932ff7d2bac92ba862c1267e3b0fc3 https://www.encodeproject.org/files/ENCFF397ADX/@@download/ENCFF397ADX.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF195CQW bigWig fold change over control ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF397ADX 767696351 ENCODE Processing Pipeline 47ffbcf4fb682037ce68b85eb762f900 https://www.encodeproject.org/files/ENCFF195CQW/@@download/ENCFF195CQW.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF712NUK bigWig signal p-value ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF397ADX 670729502 ENCODE Processing Pipeline 3d23c79ad1957e66a16259812cddfbf4 https://www.encodeproject.org/files/ENCFF712NUK/@@download/ENCFF712NUK.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF237IGL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF567XKZ 475026 ENCODE Processing Pipeline 4a8c35ccdcbc364abebc2217cb7e487b https://www.encodeproject.org/files/ENCFF237IGL/@@download/ENCFF237IGL.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF567XKZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF759YZA 246157 ENCODE Processing Pipeline 754dcba2bcc08cc56f60734517f6dffc https://www.encodeproject.org/files/ENCFF567XKZ/@@download/ENCFF567XKZ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF759YZA bed narrowPeak peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF397ADX 4919080 ENCODE Processing Pipeline cb2a5307cb1c4225ee8ddb3ec36599d5 https://www.encodeproject.org/files/ENCFF759YZA/@@download/ENCFF759YZA.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF781UJR bigBed narrowPeak peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF759YZA 11448712 ENCODE Processing Pipeline 27d75d8e378e2c2f6425b41c95d76541 https://www.encodeproject.org/files/ENCFF781UJR/@@download/ENCFF781UJR.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF265HOC bigWig signal p-value ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF931BEZ 672657268 ENCODE Processing Pipeline d704ab609b2bb82de0a53856fb28869b https://www.encodeproject.org/files/ENCFF265HOC/@@download/ENCFF265HOC.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF299TSQ bigWig fold change over control ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF931BEZ 777473797 ENCODE Processing Pipeline 2c4a23986ceb87489c41f67ace327aa3 https://www.encodeproject.org/files/ENCFF299TSQ/@@download/ENCFF299TSQ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF433YXI bed narrowPeak peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF931BEZ 4906299 ENCODE Processing Pipeline 9e824e15037fe6a72787c8d1c8408624 https://www.encodeproject.org/files/ENCFF433YXI/@@download/ENCFF433YXI.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF423CKN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF433YXI 240442 ENCODE Processing Pipeline 9a2dfb532592956632fea3ac536f0b5b https://www.encodeproject.org/files/ENCFF423CKN/@@download/ENCFF423CKN.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF846OMB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF423CKN 465831 ENCODE Processing Pipeline 5337d9f3d2938805b60cdab23d982b57 https://www.encodeproject.org/files/ENCFF846OMB/@@download/ENCFF846OMB.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF352JTN bigBed narrowPeak peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF433YXI 11421886 ENCODE Processing Pipeline 84c1cb62da9a51a66fa9992afdd1e457 https://www.encodeproject.org/files/ENCFF352JTN/@@download/ENCFF352JTN.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF285SFC fastq reads ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF530PUU 2975519343 Michael Snyder, Stanford b9a87838a0caa07bdd19c616cfd8765e https://www.encodeproject.org/files/ENCFF285SFC/@@download/ENCFF285SFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF906WRW fastq reads ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF244ELK 2992449662 Michael Snyder, Stanford c36e44322d011c00d998a309bf237289 https://www.encodeproject.org/files/ENCFF906WRW/@@download/ENCFF906WRW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF530PUU fastq reads ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF285SFC 2898578054 Michael Snyder, Stanford a6f8aafc3655c97a5b6dde2dddcd2a60 https://www.encodeproject.org/files/ENCFF530PUU/@@download/ENCFF530PUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF244ELK fastq reads ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF906WRW 2922941865 Michael Snyder, Stanford eb2c73b0106c08b0f303d8330645dc97 https://www.encodeproject.org/files/ENCFF244ELK/@@download/ENCFF244ELK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF847QUI bam unfiltered alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF285SFC, ENCFF530PUU, ENCFF643CGH 6446076702 ENCODE Processing Pipeline 9c36e415202045497d41bf418730b2fb https://www.encodeproject.org/files/ENCFF847QUI/@@download/ENCFF847QUI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF560RDP bam unfiltered alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF244ELK, ENCFF643CGH, ENCFF906WRW 6470161410 ENCODE Processing Pipeline b321244061faa9747ccf59fd41297fff https://www.encodeproject.org/files/ENCFF560RDP/@@download/ENCFF560RDP.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF952DYI bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF285SFC, ENCFF530PUU, ENCFF643CGH 5441787149 ENCODE Processing Pipeline 8bec70dd8f4a8c999fd1591f25a3c7fc https://www.encodeproject.org/files/ENCFF952DYI/@@download/ENCFF952DYI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF306BMN bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF244ELK, ENCFF643CGH, ENCFF906WRW 5450953025 ENCODE Processing Pipeline 7146be608afc4fea947bde1cb95e5b29 https://www.encodeproject.org/files/ENCFF306BMN/@@download/ENCFF306BMN.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF398CAQ bigWig signal p-value ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF306BMN, ENCFF426RDP 940768353 ENCODE Processing Pipeline 10d3411afcc8f440659b3dcdb28eebe3 https://www.encodeproject.org/files/ENCFF398CAQ/@@download/ENCFF398CAQ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF895GTD bigWig signal p-value ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF952DYI 970359738 ENCODE Processing Pipeline e46ff848e3491dcc62d94a791245b6a5 https://www.encodeproject.org/files/ENCFF895GTD/@@download/ENCFF895GTD.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF431MUF bigWig signal p-value ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF306BMN, ENCFF426RDP, ENCFF952DYI 1922740702 ENCODE Processing Pipeline 66a6fc1a06e5341e3953a882d6050f31 https://www.encodeproject.org/files/ENCFF431MUF/@@download/ENCFF431MUF.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF414UQV bigWig fold change over control ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF306BMN, ENCFF426RDP 1215343071 ENCODE Processing Pipeline 84b343b4b95ab3820d76b343f355d0d0 https://www.encodeproject.org/files/ENCFF414UQV/@@download/ENCFF414UQV.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF403TMN bigWig fold change over control ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF952DYI 1241885685 ENCODE Processing Pipeline 28979f9d3a08ff9b95d7a906f1953f45 https://www.encodeproject.org/files/ENCFF403TMN/@@download/ENCFF403TMN.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF927MHC bigWig fold change over control ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF306BMN, ENCFF426RDP, ENCFF952DYI 2191003803 ENCODE Processing Pipeline 58ae230ab83aed77959167b87ddb9551 https://www.encodeproject.org/files/ENCFF927MHC/@@download/ENCFF927MHC.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF377WCI bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF306BMN, ENCFF426RDP 6297211 ENCODE Processing Pipeline 61fad89517fb0259e1438ae6c5efaa44 https://www.encodeproject.org/files/ENCFF377WCI/@@download/ENCFF377WCI.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF965CBM bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF952DYI 6258391 ENCODE Processing Pipeline b1354426c714bd2a1283e16b78128247 https://www.encodeproject.org/files/ENCFF965CBM/@@download/ENCFF965CBM.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF060WGA bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF306BMN, ENCFF426RDP, ENCFF952DYI 7154710 ENCODE Processing Pipeline 78e4504d01d127b157a3d2cbc8e4745e https://www.encodeproject.org/files/ENCFF060WGA/@@download/ENCFF060WGA.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF601QRG bigBed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF377WCI 11047982 ENCODE Processing Pipeline 657cf0f706c7ebc5dc49831bca811790 https://www.encodeproject.org/files/ENCFF601QRG/@@download/ENCFF601QRG.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF935UEN bigBed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF965CBM 11045394 ENCODE Processing Pipeline c82dce61c1fcd6e9210a7d74217630ae https://www.encodeproject.org/files/ENCFF935UEN/@@download/ENCFF935UEN.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF333EBV bigBed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF060WGA 13135190 ENCODE Processing Pipeline ab672beec6809049e541cbd28f728457 https://www.encodeproject.org/files/ENCFF333EBV/@@download/ENCFF333EBV.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF315EAQ bed narrowPeak conservative idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF060WGA, ENCFF377WCI, ENCFF419RSJ, ENCFF965CBM 32558 ENCODE Processing Pipeline 2c2e7ae9a72a0aa0133d2ed0037bb92b https://www.encodeproject.org/files/ENCFF315EAQ/@@download/ENCFF315EAQ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF089QRW bigBed narrowPeak conservative idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF315EAQ 134641 ENCODE Processing Pipeline a664b500dbb80a8ff691620c5063d7a6 https://www.encodeproject.org/files/ENCFF089QRW/@@download/ENCFF089QRW.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF209TEF bed narrowPeak optimal idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF060WGA, ENCFF377WCI, ENCFF419RSJ, ENCFF965CBM 77543 ENCODE Processing Pipeline 2438184541ce7c3bb72f6210e5539472 https://www.encodeproject.org/files/ENCFF209TEF/@@download/ENCFF209TEF.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF777AEV bigBed narrowPeak optimal idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF209TEF 221042 ENCODE Processing Pipeline 7608e12ddfeab0b1477bf5fb43d0bcb4 https://www.encodeproject.org/files/ENCFF777AEV/@@download/ENCFF777AEV.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF808FJY bam unfiltered alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF244ELK, ENCFF807MUK, ENCFF906WRW 6459058635 ENCODE Processing Pipeline 091ea2166bb364380a69c4da25a37cb2 https://www.encodeproject.org/files/ENCFF808FJY/@@download/ENCFF808FJY.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF073FYX bam unfiltered alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF285SFC, ENCFF530PUU, ENCFF807MUK 6434483266 ENCODE Processing Pipeline 444b9f3f167015553ddddb783cc7d0e5 https://www.encodeproject.org/files/ENCFF073FYX/@@download/ENCFF073FYX.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF943DGZ bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF244ELK, ENCFF807MUK, ENCFF906WRW 5444192608 ENCODE Processing Pipeline 11174973f0524420369f50249e7be8b9 https://www.encodeproject.org/files/ENCFF943DGZ/@@download/ENCFF943DGZ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF084PMJ bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF285SFC, ENCFF530PUU, ENCFF807MUK 5433947526 ENCODE Processing Pipeline 6bc7617d999968751f446ed25f2cdc4d https://www.encodeproject.org/files/ENCFF084PMJ/@@download/ENCFF084PMJ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF990NTY bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF943DGZ 6289486 ENCODE Processing Pipeline 5ba15d436dab08055f7bcc0267b8031e https://www.encodeproject.org/files/ENCFF990NTY/@@download/ENCFF990NTY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF054UNK bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF084PMJ, ENCFF583FAG, ENCFF943DGZ 7146847 ENCODE Processing Pipeline 9a717f53de7f8f89af94d3da5a9fba1a https://www.encodeproject.org/files/ENCFF054UNK/@@download/ENCFF054UNK.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF438FGV bigWig fold change over control ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF943DGZ 1190222173 ENCODE Processing Pipeline 64f01f34a07b96476495fffe60ca4783 https://www.encodeproject.org/files/ENCFF438FGV/@@download/ENCFF438FGV.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF946ITW bigBed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF762YNF 11028052 ENCODE Processing Pipeline d4b538ac12b7ed86a2b7c715f3176151 https://www.encodeproject.org/files/ENCFF946ITW/@@download/ENCFF946ITW.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF307HRD bigWig signal p-value ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF943DGZ 988807848 ENCODE Processing Pipeline 37312cc7c73e31b242edc23ee83acc0a https://www.encodeproject.org/files/ENCFF307HRD/@@download/ENCFF307HRD.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF922QEI bed narrowPeak optimal idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF054UNK, ENCFF762YNF, ENCFF990NTY 75946 ENCODE Processing Pipeline eb6200cfe45cf80fa8c2b3215e541fde https://www.encodeproject.org/files/ENCFF922QEI/@@download/ENCFF922QEI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF271WVR bigWig fold change over control ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF084PMJ, ENCFF583FAG, ENCFF943DGZ 2186376520 ENCODE Processing Pipeline 37fdfa8286f7aef48062bec71207f506 https://www.encodeproject.org/files/ENCFF271WVR/@@download/ENCFF271WVR.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF277PBJ bigWig signal p-value ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF084PMJ 1231432613 ENCODE Processing Pipeline 693cbf508c81fe6841385a626db4b0f1 https://www.encodeproject.org/files/ENCFF277PBJ/@@download/ENCFF277PBJ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF884FDY bigWig signal p-value ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF084PMJ, ENCFF583FAG, ENCFF943DGZ 1779661353 ENCODE Processing Pipeline 93bb2541168639e7e602c36ba4b923ae https://www.encodeproject.org/files/ENCFF884FDY/@@download/ENCFF884FDY.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF222WNH bigBed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF054UNK 13113724 ENCODE Processing Pipeline f95e4e7902c3ee89d66c3d77761e61f5 https://www.encodeproject.org/files/ENCFF222WNH/@@download/ENCFF222WNH.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF105XQA bed narrowPeak conservative idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF054UNK, ENCFF762YNF, ENCFF990NTY 30166 ENCODE Processing Pipeline 2be43579d36590385781a13b7b2fd3b6 https://www.encodeproject.org/files/ENCFF105XQA/@@download/ENCFF105XQA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF886ITL bigBed narrowPeak conservative idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF105XQA 127610 ENCODE Processing Pipeline 6480c855320c8d03c1cd3a6d99289d77 https://www.encodeproject.org/files/ENCFF886ITL/@@download/ENCFF886ITL.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF184YEZ bigWig fold change over control ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF084PMJ 1240531286 ENCODE Processing Pipeline c79bbec19803e38220c526e421683cd3 https://www.encodeproject.org/files/ENCFF184YEZ/@@download/ENCFF184YEZ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF762YNF bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF084PMJ 6251176 ENCODE Processing Pipeline 7ed798b9497c7602c831b612b156f34e https://www.encodeproject.org/files/ENCFF762YNF/@@download/ENCFF762YNF.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF972ADN bigBed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF990NTY 11028536 ENCODE Processing Pipeline ae2cc7d5e64f1b5813cb74619f293324 https://www.encodeproject.org/files/ENCFF972ADN/@@download/ENCFF972ADN.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF410PNY bigBed narrowPeak optimal idr thresholded peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF922QEI 215873 ENCODE Processing Pipeline fade91b9c84d18cf2250fb17adfc4d46 https://www.encodeproject.org/files/ENCFF410PNY/@@download/ENCFF410PNY.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF059KSX fastq reads ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF990KCY 3204952478 Michael Snyder, Stanford 867403af9817757d90267d56bbbb5881 SRA:SRR6214186 https://www.encodeproject.org/files/ENCFF059KSX/@@download/ENCFF059KSX.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF052UFC fastq reads ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF278QRX 2516378159 Michael Snyder, Stanford 9dec0045e1e2041256a9f5baaacd6f47 SRA:SRR6214187 https://www.encodeproject.org/files/ENCFF052UFC/@@download/ENCFF052UFC.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF278QRX fastq reads ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF052UFC 3108302731 Michael Snyder, Stanford 05d1f3703ad60f096dbe4a6f23667327 SRA:SRR6214187 https://www.encodeproject.org/files/ENCFF278QRX/@@download/ENCFF278QRX.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF990KCY fastq reads ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF059KSX 2595089276 Michael Snyder, Stanford 50330bea3184a4e66b9a84cf7e1dc3ff SRA:SRR6214186 https://www.encodeproject.org/files/ENCFF990KCY/@@download/ENCFF990KCY.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF469RIT bam unfiltered alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF052UFC, ENCFF278QRX, ENCFF807MUK 5747946360 ENCODE Processing Pipeline de7c0af0c929ededdef1a6bb2f9000ee https://www.encodeproject.org/files/ENCFF469RIT/@@download/ENCFF469RIT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF269FZF bam unfiltered alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF059KSX, ENCFF643CGH, ENCFF990KCY 5943517419 ENCODE Processing Pipeline 8d097d1e3cd91ff0101d67023506b91e https://www.encodeproject.org/files/ENCFF269FZF/@@download/ENCFF269FZF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF043BND bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF059KSX, ENCFF807MUK, ENCFF990KCY 4823865157 ENCODE Processing Pipeline 5b45c5dd245724e571d7cec1199a273a https://www.encodeproject.org/files/ENCFF043BND/@@download/ENCFF043BND.bam hg19 released missing genetic modification characterization missing control alignments ENCFF405MPS bam unfiltered alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF059KSX, ENCFF807MUK, ENCFF990KCY 5930654294 ENCODE Processing Pipeline 0ea7bb3a8486d6e69e7c6158a73cbcb5 https://www.encodeproject.org/files/ENCFF405MPS/@@download/ENCFF405MPS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF686YAE bam unfiltered alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF052UFC, ENCFF278QRX, ENCFF643CGH 5760226707 ENCODE Processing Pipeline 399dfabb09b3f8bafc8de7541212d15a https://www.encodeproject.org/files/ENCFF686YAE/@@download/ENCFF686YAE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF018KVH bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF052UFC, ENCFF278QRX, ENCFF807MUK 4627292418 ENCODE Processing Pipeline 3199c235fa6691648b43e670ee602bd2 https://www.encodeproject.org/files/ENCFF018KVH/@@download/ENCFF018KVH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF666UIT bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF052UFC, ENCFF278QRX, ENCFF643CGH 4629952430 ENCODE Processing Pipeline 3fe10d0d816da9322140630581e8e89d https://www.encodeproject.org/files/ENCFF666UIT/@@download/ENCFF666UIT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF851NRN bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF059KSX, ENCFF643CGH, ENCFF990KCY 4827290976 ENCODE Processing Pipeline a6e4120899bc863a6932a895986cdba1 https://www.encodeproject.org/files/ENCFF851NRN/@@download/ENCFF851NRN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF722UOK bigWig fold change over control ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF043BND, ENCFF182WHU 1670387024 ENCODE Processing Pipeline d49336374b34fcef5b1cc4bdf9641fcf https://www.encodeproject.org/files/ENCFF722UOK/@@download/ENCFF722UOK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF418AGL bigWig fold change over control ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF851NRN 1672057825 ENCODE Processing Pipeline fb3c138e6e84542a3c25148af7054547 https://www.encodeproject.org/files/ENCFF418AGL/@@download/ENCFF418AGL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF462KAO bigWig signal p-value ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF851NRN 1448087762 ENCODE Processing Pipeline ad09e163eb92fe167f81b2e8793d92e3 https://www.encodeproject.org/files/ENCFF462KAO/@@download/ENCFF462KAO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF191FHR bigWig signal p-value ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF043BND, ENCFF182WHU 1495121728 ENCODE Processing Pipeline 432d3e94902f9ef3db5bcaa630665607 https://www.encodeproject.org/files/ENCFF191FHR/@@download/ENCFF191FHR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF519NTC bigWig signal p-value ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF018KVH, ENCFF182WHU 1471812404 ENCODE Processing Pipeline 21acfef62e3c6cf0ebeb6c8bd9058e0d https://www.encodeproject.org/files/ENCFF519NTC/@@download/ENCFF519NTC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF229GHS bigWig signal p-value ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF018KVH, ENCFF043BND, ENCFF182WHU 1961391880 ENCODE Processing Pipeline f331a24cbc55b67773b56f9bb686718e https://www.encodeproject.org/files/ENCFF229GHS/@@download/ENCFF229GHS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF327ZNK bigWig signal p-value ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF666UIT, ENCFF810LLR 1292685572 ENCODE Processing Pipeline a8834fe8827175f7c7e32f67e4e4c567 https://www.encodeproject.org/files/ENCFF327ZNK/@@download/ENCFF327ZNK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF528VQE bigWig signal p-value ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF666UIT, ENCFF810LLR, ENCFF851NRN 1964177794 ENCODE Processing Pipeline f80a791892b2cb74d41951c0051695af https://www.encodeproject.org/files/ENCFF528VQE/@@download/ENCFF528VQE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF446ICE bigWig fold change over control ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF018KVH, ENCFF182WHU 1634105723 ENCODE Processing Pipeline 33e673deb5bf362310d9c841098d8f16 https://www.encodeproject.org/files/ENCFF446ICE/@@download/ENCFF446ICE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF981ZMP bigWig fold change over control ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF666UIT, ENCFF810LLR 1635269106 ENCODE Processing Pipeline 0cd63ccadd6c1f053e4b393b829b1de5 https://www.encodeproject.org/files/ENCFF981ZMP/@@download/ENCFF981ZMP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF503YDI bigWig fold change over control ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF018KVH, ENCFF043BND, ENCFF182WHU 2244342937 ENCODE Processing Pipeline fbfae500cbf69f5bff164d9887be47b1 https://www.encodeproject.org/files/ENCFF503YDI/@@download/ENCFF503YDI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF772BAN bigBed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF262JCU 11070689 ENCODE Processing Pipeline 57080f16d23b72cdeb0c922b895c2f0b https://www.encodeproject.org/files/ENCFF772BAN/@@download/ENCFF772BAN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF193NHK bed narrowPeak conservative idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF499AJK, ENCFF599NBE, ENCFF854NKM 30061 ENCODE Processing Pipeline 1ab6e7e23815f05f879b63ddd5e0e48d https://www.encodeproject.org/files/ENCFF193NHK/@@download/ENCFF193NHK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF382MWI bigBed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF078IAH 11218574 ENCODE Processing Pipeline 18781da95ce64f2043f197e94e1ae474 https://www.encodeproject.org/files/ENCFF382MWI/@@download/ENCFF382MWI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF078IAH bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF018KVH, ENCFF043BND, ENCFF182WHU 7281083 ENCODE Processing Pipeline 168a0dd2188ea72ebe5979076852c9fe https://www.encodeproject.org/files/ENCFF078IAH/@@download/ENCFF078IAH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF900BLR bigBed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF599NBE 11237714 ENCODE Processing Pipeline b4d7f8e124afb4d3d93c13584497c63c https://www.encodeproject.org/files/ENCFF900BLR/@@download/ENCFF900BLR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF113UXL bigBed narrowPeak conservative idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF193NHK 105939 ENCODE Processing Pipeline 2d9bd9c64ec7f2eb8f0569f6442a5db0 https://www.encodeproject.org/files/ENCFF113UXL/@@download/ENCFF113UXL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF057VRL bed narrowPeak optimal idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF078IAH, ENCFF086UBE, ENCFF262JCU 40516 ENCODE Processing Pipeline e8ab7cb8c2a09f7463fe6e4c74d02e30 https://www.encodeproject.org/files/ENCFF057VRL/@@download/ENCFF057VRL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF596FEL bigBed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF086UBE 11056128 ENCODE Processing Pipeline 6b93a1eb046b8356f836cedd9c98e27a https://www.encodeproject.org/files/ENCFF596FEL/@@download/ENCFF596FEL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF116UIL bed narrowPeak conservative idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF078IAH, ENCFF086UBE, ENCFF262JCU 29156 ENCODE Processing Pipeline 54f7b11579a4276aca00795433c8d286 https://www.encodeproject.org/files/ENCFF116UIL/@@download/ENCFF116UIL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF537AEH bigBed narrowPeak optimal idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF057VRL 119446 ENCODE Processing Pipeline 6c272bf3a590b744e4266251f53697e6 https://www.encodeproject.org/files/ENCFF537AEH/@@download/ENCFF537AEH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF081XMI bigWig fold change over control ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF666UIT, ENCFF810LLR, ENCFF851NRN 2249257993 ENCODE Processing Pipeline 36e0c2a37282948755c99bebe940e52c https://www.encodeproject.org/files/ENCFF081XMI/@@download/ENCFF081XMI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF499AJK bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF851NRN 6634605 ENCODE Processing Pipeline e5594a8645a61f3cb01a618b9f224d98 https://www.encodeproject.org/files/ENCFF499AJK/@@download/ENCFF499AJK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF854NKM bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF666UIT, ENCFF810LLR 6632917 ENCODE Processing Pipeline 6a96184ca011ab1933f91483b218761d https://www.encodeproject.org/files/ENCFF854NKM/@@download/ENCFF854NKM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF831DRU bed narrowPeak optimal idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF499AJK, ENCFF599NBE, ENCFF854NKM 40644 ENCODE Processing Pipeline d6c88a87af63692fd19bbf68a0376c06 https://www.encodeproject.org/files/ENCFF831DRU/@@download/ENCFF831DRU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF262JCU bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF043BND, ENCFF182WHU 6630001 ENCODE Processing Pipeline f05317903e122dfc8f481a0f0a54d3d0 https://www.encodeproject.org/files/ENCFF262JCU/@@download/ENCFF262JCU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF599NBE bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF666UIT, ENCFF810LLR, ENCFF851NRN 7288677 ENCODE Processing Pipeline a4a81936f637c2379cdbffddca10c38b https://www.encodeproject.org/files/ENCFF599NBE/@@download/ENCFF599NBE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF086UBE bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF018KVH, ENCFF182WHU 6630194 ENCODE Processing Pipeline 0251f1dd48707a11b670f10e086ec9e6 https://www.encodeproject.org/files/ENCFF086UBE/@@download/ENCFF086UBE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF664KGY bigBed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF499AJK 11088023 ENCODE Processing Pipeline d25350a02362802e4725466d0cbd00f7 https://www.encodeproject.org/files/ENCFF664KGY/@@download/ENCFF664KGY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF720UNL bigBed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF854NKM 11069461 ENCODE Processing Pipeline 4a7f1d748aca976c854ddc7af0ce2101 https://www.encodeproject.org/files/ENCFF720UNL/@@download/ENCFF720UNL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF180XGJ bigBed narrowPeak optimal idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF831DRU 121502 ENCODE Processing Pipeline fd3898e9d4d2d4c76f4c021309b9d816 https://www.encodeproject.org/files/ENCFF180XGJ/@@download/ENCFF180XGJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF399ZTD bigBed narrowPeak conservative idr thresholded peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF116UIL 102382 ENCODE Processing Pipeline 4dfc797ec2b3c151958dfee5c8bbd658 https://www.encodeproject.org/files/ENCFF399ZTD/@@download/ENCFF399ZTD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF452DGQ fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF271IUJ 2635818350 Michael Snyder, Stanford 714fdf6063356e3be5c7c8a1d495ab32 SRA:SRR6214305 https://www.encodeproject.org/files/ENCFF452DGQ/@@download/ENCFF452DGQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF271IUJ fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF452DGQ 3062951401 Michael Snyder, Stanford 87487dcfb90c5ba77b8e76b7b80a7624 SRA:SRR6214305 https://www.encodeproject.org/files/ENCFF271IUJ/@@download/ENCFF271IUJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF814CFQ fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF253VDT 2685563272 Michael Snyder, Stanford 4d3b2ecf9026e258225d882b5627e6f9 SRA:SRR6214304 https://www.encodeproject.org/files/ENCFF814CFQ/@@download/ENCFF814CFQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF253VDT fastq reads ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF814CFQ 3182067184 Michael Snyder, Stanford fb68ffbefd48206948d194296e619a42 SRA:SRR6214304 https://www.encodeproject.org/files/ENCFF253VDT/@@download/ENCFF253VDT.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF100LIK bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF807MUK 3998707587 ENCODE Processing Pipeline 20128d57c801ef21b630afb9a1a4f8c1 https://www.encodeproject.org/files/ENCFF100LIK/@@download/ENCFF100LIK.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF490DDO bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF807MUK 5265190452 ENCODE Processing Pipeline 48b7976f836e57615a54feab90ea0aa1 https://www.encodeproject.org/files/ENCFF490DDO/@@download/ENCFF490DDO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF197RPF bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF643CGH 5269608959 ENCODE Processing Pipeline 950534c9d3a5e984120ee1828013d7fa https://www.encodeproject.org/files/ENCFF197RPF/@@download/ENCFF197RPF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF257XYL bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF643CGH 4004369718 ENCODE Processing Pipeline 045dfc2339d8cbc67bcac6fef6837fd1 https://www.encodeproject.org/files/ENCFF257XYL/@@download/ENCFF257XYL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF577XDA bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF807MUK, ENCFF814CFQ 4409684313 ENCODE Processing Pipeline d756aebefbdab2a2aaba7823dcfffaed https://www.encodeproject.org/files/ENCFF577XDA/@@download/ENCFF577XDA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF808DKU bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF807MUK, ENCFF814CFQ 5533837255 ENCODE Processing Pipeline 1c684f12bca87e48b55e7ae1fc6564d6 https://www.encodeproject.org/files/ENCFF808DKU/@@download/ENCFF808DKU.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF529JDU bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF643CGH, ENCFF814CFQ 4415833210 ENCODE Processing Pipeline a959bea9ac9f0b8030d1f45b147fdff5 https://www.encodeproject.org/files/ENCFF529JDU/@@download/ENCFF529JDU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF078RWZ bam unfiltered alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF643CGH, ENCFF814CFQ 5539926557 ENCODE Processing Pipeline 513e9655c60c853db1aed960b1c9755e https://www.encodeproject.org/files/ENCFF078RWZ/@@download/ENCFF078RWZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF489DHO bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 1835382661 ENCODE Processing Pipeline 54cba2e30fc1920154ef829818985877 https://www.encodeproject.org/files/ENCFF489DHO/@@download/ENCFF489DHO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF274VOO bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF100LIK, ENCFF577XDA, ENCFF592WAL, ENCFF901CND 2349268913 ENCODE Processing Pipeline c728c3456fb6f97188bc8a426137f741 https://www.encodeproject.org/files/ENCFF274VOO/@@download/ENCFF274VOO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF449XRE bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF348CSG 13370283 ENCODE Processing Pipeline a648cb47e72afafb0ad645c62dce2b3f https://www.encodeproject.org/files/ENCFF449XRE/@@download/ENCFF449XRE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF082CZO bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF100LIK, ENCFF577XDA, ENCFF592WAL, ENCFF901CND 2382085231 ENCODE Processing Pipeline 7acd9b6874ea348825c009280304bd52 https://www.encodeproject.org/files/ENCFF082CZO/@@download/ENCFF082CZO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF225XZT bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF665KNY 13621584 ENCODE Processing Pipeline 0daac7cedae5b616335a8d07f19dd39c https://www.encodeproject.org/files/ENCFF225XZT/@@download/ENCFF225XZT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF440AVO bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 1297095415 ENCODE Processing Pipeline 1bf3218fee213043abeeb64ae3950877 https://www.encodeproject.org/files/ENCFF440AVO/@@download/ENCFF440AVO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF665KNY bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 6736864 ENCODE Processing Pipeline 2e36cff01444f7ba282020bc8e7b0328 https://www.encodeproject.org/files/ENCFF665KNY/@@download/ENCFF665KNY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF680WTT bigBed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF263YTU 1179217 ENCODE Processing Pipeline 44aec27dca7b4129f47373331ffc8576 https://www.encodeproject.org/files/ENCFF680WTT/@@download/ENCFF680WTT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF601DQY bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 1626238129 ENCODE Processing Pipeline 99e96ce282aeb034a5cf9e705eca9eba https://www.encodeproject.org/files/ENCFF601DQY/@@download/ENCFF601DQY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF148WOH bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 1197044766 ENCODE Processing Pipeline d7269814ab77dc3d25632414098b5272 https://www.encodeproject.org/files/ENCFF148WOH/@@download/ENCFF148WOH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF348CSG bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 6747071 ENCODE Processing Pipeline d4dc54ad489f3d6b04ffc30b0091448b https://www.encodeproject.org/files/ENCFF348CSG/@@download/ENCFF348CSG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF263YTU bed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF052WWT, ENCFF348CSG, ENCFF665KNY 536877 ENCODE Processing Pipeline dea82036dc36c33a6345ede5b37798d8 https://www.encodeproject.org/files/ENCFF263YTU/@@download/ENCFF263YTU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF643OWO bed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF052WWT, ENCFF348CSG, ENCFF665KNY 594294 ENCODE Processing Pipeline e97fb90edf8b142381499be4561ffb6e https://www.encodeproject.org/files/ENCFF643OWO/@@download/ENCFF643OWO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF052WWT bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF100LIK, ENCFF577XDA, ENCFF592WAL, ENCFF901CND 7265183 ENCODE Processing Pipeline cdba967fd3327d6729dd575f5c55ac66 https://www.encodeproject.org/files/ENCFF052WWT/@@download/ENCFF052WWT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF672PIC bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF052WWT 13346252 ENCODE Processing Pipeline 1773803829b5c09f097e110ea2ad632b https://www.encodeproject.org/files/ENCFF672PIC/@@download/ENCFF672PIC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF134ARM bigBed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF643OWO 1290451 ENCODE Processing Pipeline bf7785a1f1b7c6b266302f3a740f2666 https://www.encodeproject.org/files/ENCFF134ARM/@@download/ENCFF134ARM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF038IYA bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF257XYL, ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 2393549364 ENCODE Processing Pipeline 65b2cc5ece1a6b28d851527e3e1691a5 https://www.encodeproject.org/files/ENCFF038IYA/@@download/ENCFF038IYA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF687TYV bigBed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF137BRA 1300872 ENCODE Processing Pipeline cc3f7e4554b00544ed38e1d7ff11f321 https://www.encodeproject.org/files/ENCFF687TYV/@@download/ENCFF687TYV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF263GUB bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF257XYL, ENCFF322NTO 1203382731 ENCODE Processing Pipeline 2245ccab3fc04ecc6cf76198ee5358b2 https://www.encodeproject.org/files/ENCFF263GUB/@@download/ENCFF263GUB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF670COI bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF257XYL, ENCFF322NTO 1296617818 ENCODE Processing Pipeline 24001573db6559b49c72e03d02ac6011 https://www.encodeproject.org/files/ENCFF670COI/@@download/ENCFF670COI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF244SNW bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF257XYL, ENCFF322NTO 6762225 ENCODE Processing Pipeline 5d6a1b7c15a6e992d06716c1db4f1d03 https://www.encodeproject.org/files/ENCFF244SNW/@@download/ENCFF244SNW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF918YEX bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF257XYL, ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 7272412 ENCODE Processing Pipeline 03f0765ee98a8ea66d25854ebe236bd3 https://www.encodeproject.org/files/ENCFF918YEX/@@download/ENCFF918YEX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF821UWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF012XLD 1184607 ENCODE Processing Pipeline bb1abe585b5770267df688e9b3649ae0 https://www.encodeproject.org/files/ENCFF821UWJ/@@download/ENCFF821UWJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF713IYR bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 1666585770 ENCODE Processing Pipeline ad945c83d3d4f381ac260e2e383aa158 https://www.encodeproject.org/files/ENCFF713IYR/@@download/ENCFF713IYR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF910XBC bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF244SNW 13398222 ENCODE Processing Pipeline 1d1b64dd8986d3b15824503d3daf94ab https://www.encodeproject.org/files/ENCFF910XBC/@@download/ENCFF910XBC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF824PGV bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 6753098 ENCODE Processing Pipeline 300c939d9504ec92af4d9caa3bdeb182 https://www.encodeproject.org/files/ENCFF824PGV/@@download/ENCFF824PGV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF339UEH bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF918YEX 13363621 ENCODE Processing Pipeline 4156c548b55a029518f91a0075d81b57 https://www.encodeproject.org/files/ENCFF339UEH/@@download/ENCFF339UEH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF012XLD bed narrowPeak conservative idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF244SNW, ENCFF419RSJ, ENCFF824PGV, ENCFF918YEX 538473 ENCODE Processing Pipeline 88f78cf6c4bc2c5bb4ed5b3b42aaa275 https://www.encodeproject.org/files/ENCFF012XLD/@@download/ENCFF012XLD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF137BRA bed narrowPeak optimal idr thresholded peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF244SNW, ENCFF419RSJ, ENCFF824PGV, ENCFF918YEX 599600 ENCODE Processing Pipeline 035e3c404cbbbc182705503da480fd85 https://www.encodeproject.org/files/ENCFF137BRA/@@download/ENCFF137BRA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF743QVO bigWig signal p-value ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF257XYL, ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 2010230584 ENCODE Processing Pipeline a5def7667deb0c82a5c20742141be57d https://www.encodeproject.org/files/ENCFF743QVO/@@download/ENCFF743QVO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF552TIM bigWig fold change over control ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF322NTO, ENCFF529JDU, ENCFF666ATR 1819470469 ENCODE Processing Pipeline 305bb6ecce607ad37845abfded0f4f87 https://www.encodeproject.org/files/ENCFF552TIM/@@download/ENCFF552TIM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF118MVL bigBed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF824PGV 13617880 ENCODE Processing Pipeline 52af313e93093a74dde8b823f04d22cd https://www.encodeproject.org/files/ENCFF118MVL/@@download/ENCFF118MVL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF554MGZ fastq reads ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF228VLO 1904507739 Richard Myers, HAIB 3ed3020cd38354af776e0cf4b97228fc SRA:SRR6214368 https://www.encodeproject.org/files/ENCFF554MGZ/@@download/ENCFF554MGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF974UBB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF228VLO fastq reads ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF554MGZ 1972992409 Richard Myers, HAIB e67810a9f1b97cef714fe103ec8745e0 SRA:SRR6214368 https://www.encodeproject.org/files/ENCFF228VLO/@@download/ENCFF228VLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF588NFI/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF389KOZ bam unfiltered alignments ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF228VLO, ENCFF554MGZ, ENCFF807MUK 4541240812 ENCODE Processing Pipeline 58de2ee4282c48215b1e74ccf2c5d001 https://www.encodeproject.org/files/ENCFF389KOZ/@@download/ENCFF389KOZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF735WJM bam alignments ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF228VLO, ENCFF554MGZ, ENCFF807MUK 3250141801 ENCODE Processing Pipeline 673a63e39a0322470bae47cd8bba3494 https://www.encodeproject.org/files/ENCFF735WJM/@@download/ENCFF735WJM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF665GNK bam unfiltered alignments ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF228VLO, ENCFF554MGZ, ENCFF643CGH 4555624798 ENCODE Processing Pipeline 8037bc262218d8dbb13b5ba7911a664d https://www.encodeproject.org/files/ENCFF665GNK/@@download/ENCFF665GNK.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF644RTP bam alignments ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF228VLO, ENCFF554MGZ, ENCFF643CGH 3251892550 ENCODE Processing Pipeline 5a43d57aea6d627ea5c59f27b585b727 https://www.encodeproject.org/files/ENCFF644RTP/@@download/ENCFF644RTP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF135IWU bigWig signal p-value ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF644RTP 1063966765 ENCODE Processing Pipeline c50688256f6a4382512c0475d1c4ab0b https://www.encodeproject.org/files/ENCFF135IWU/@@download/ENCFF135IWU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF718FJH bigWig fold change over control ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF644RTP 1135444743 ENCODE Processing Pipeline ff0f08f25df598529e020ec51fdf3b5d https://www.encodeproject.org/files/ENCFF718FJH/@@download/ENCFF718FJH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF242HMY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF169GVB, ENCFF419RSJ 4518 ENCODE Processing Pipeline ff0e7ed8304a0b1f8c2ee3698ab4de69 https://www.encodeproject.org/files/ENCFF242HMY/@@download/ENCFF242HMY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF169GVB bed narrowPeak peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF644RTP 5343117 ENCODE Processing Pipeline a840581da60819a2b036cabfabb8d94a https://www.encodeproject.org/files/ENCFF169GVB/@@download/ENCFF169GVB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF935ITS bigBed narrowPeak peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF169GVB 11608289 ENCODE Processing Pipeline 70ef68a57261b3a181b43055d4d35bb7 https://www.encodeproject.org/files/ENCFF935ITS/@@download/ENCFF935ITS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF394PKE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF242HMY 59159 ENCODE Processing Pipeline 93fa1041d215fe8e39a4b79eefe905e7 https://www.encodeproject.org/files/ENCFF394PKE/@@download/ENCFF394PKE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF002GHA bigWig signal p-value ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF735WJM 1087116062 ENCODE Processing Pipeline dbd5468ea45afb06f102bc8e8c7f1738 https://www.encodeproject.org/files/ENCFF002GHA/@@download/ENCFF002GHA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF270YIJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF797HPJ 59382 ENCODE Processing Pipeline 48fcae5d1753187a1f8ef58c12bc5b72 https://www.encodeproject.org/files/ENCFF270YIJ/@@download/ENCFF270YIJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF737LLC bigWig fold change over control ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF735WJM 1133681515 ENCODE Processing Pipeline 00e177ef3a0721cfa56e0bf7aec4bf49 https://www.encodeproject.org/files/ENCFF737LLC/@@download/ENCFF737LLC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF169WDW bigBed narrowPeak peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF235SRJ 11593963 ENCODE Processing Pipeline bf975954b4f3d2f882de76cfec9709fb https://www.encodeproject.org/files/ENCFF169WDW/@@download/ENCFF169WDW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF797HPJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF235SRJ 4739 ENCODE Processing Pipeline 4a9a281d2872a950814732caac2cbe78 https://www.encodeproject.org/files/ENCFF797HPJ/@@download/ENCFF797HPJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF235SRJ bed narrowPeak peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF735WJM 5342329 ENCODE Processing Pipeline 76da94379a763d4fc8eef2c2b4c6aa4a https://www.encodeproject.org/files/ENCFF235SRJ/@@download/ENCFF235SRJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF996MYT bam unfiltered alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 100 ENCFF607RXB, ENCFF633AET, ENCFF807MUK 6729483303 ENCODE Processing Pipeline aed777687ddc099198ba637e400916fa https://www.encodeproject.org/files/ENCFF996MYT/@@download/ENCFF996MYT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF606PPQ bam unfiltered alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 100 ENCFF111REI, ENCFF554XIX, ENCFF807MUK 8719878041 ENCODE Processing Pipeline 4129dd676fe98cd2538e5c619f3b3f9b https://www.encodeproject.org/files/ENCFF606PPQ/@@download/ENCFF606PPQ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF607RXB fastq reads ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF633AET 3049744794 Michael Snyder, Stanford 4cf340496361518f69e865ded48b6420 SRA:SRR5111729 https://www.encodeproject.org/files/ENCFF607RXB/@@download/ENCFF607RXB.fastq.gz Illumina HiSeq 2000 /files/ENCFF055UND/, /files/ENCFF406XFM/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF633AET fastq reads ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF607RXB 3128827700 Michael Snyder, Stanford b2abf9f5ce87a17d868cea2f72b8ede1 SRA:SRR5111729 https://www.encodeproject.org/files/ENCFF633AET/@@download/ENCFF633AET.fastq.gz Illumina HiSeq 2000 /files/ENCFF055UND/, /files/ENCFF406XFM/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF554XIX fastq reads ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF111REI 4107622003 Michael Snyder, Stanford c6ba4ad71e7a6621a147fc627caaead1 SRA:SRR5111728 https://www.encodeproject.org/files/ENCFF554XIX/@@download/ENCFF554XIX.fastq.gz Illumina HiSeq 2000 /files/ENCFF055UND/, /files/ENCFF406XFM/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF111REI fastq reads ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF554XIX 4214864391 Michael Snyder, Stanford 9fc325201bd588f27010a8483aceb608 SRA:SRR5111728 https://www.encodeproject.org/files/ENCFF111REI/@@download/ENCFF111REI.fastq.gz Illumina HiSeq 2000 /files/ENCFF055UND/, /files/ENCFF406XFM/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF424AYM bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF607RXB, ENCFF633AET, ENCFF807MUK 5350737101 ENCODE Processing Pipeline f96ef5a8100db27e9272d80d4ec518cb https://www.encodeproject.org/files/ENCFF424AYM/@@download/ENCFF424AYM.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF130RDX bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF111REI, ENCFF554XIX, ENCFF807MUK 6447954457 ENCODE Processing Pipeline 04aa903121410751c8008c100899d810 https://www.encodeproject.org/files/ENCFF130RDX/@@download/ENCFF130RDX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF068VWL bigWig signal p-value ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF424AYM, ENCFF990ZOB 1193278202 ENCODE Processing Pipeline c87b207166fcdcc32d572b9ebaadad2d https://www.encodeproject.org/files/ENCFF068VWL/@@download/ENCFF068VWL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF612HAO bigWig signal p-value ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF130RDX, ENCFF990ZOB 1438465156 ENCODE Processing Pipeline 298acffa159c17b240a6aa44d5243585 https://www.encodeproject.org/files/ENCFF612HAO/@@download/ENCFF612HAO.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF415MTB bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF424AYM, ENCFF990ZOB 7060962 ENCODE Processing Pipeline 60dfebafea7c06794e27f9c17994ba44 https://www.encodeproject.org/files/ENCFF415MTB/@@download/ENCFF415MTB.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF382KZM bigBed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF415MTB 12992893 ENCODE Processing Pipeline ef4c556d7bd1f96431e788e07b1fa8e9 https://www.encodeproject.org/files/ENCFF382KZM/@@download/ENCFF382KZM.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF334GUE bigWig fold change over control ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF130RDX, ENCFF990ZOB 1430278732 ENCODE Processing Pipeline 1a064d0fedec3b1993121068f87cdd55 https://www.encodeproject.org/files/ENCFF334GUE/@@download/ENCFF334GUE.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF623GLE bigWig fold change over control ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF130RDX, ENCFF424AYM, ENCFF990ZOB 1986467041 ENCODE Processing Pipeline 369a6bab45312d97baa5be2116a713f5 https://www.encodeproject.org/files/ENCFF623GLE/@@download/ENCFF623GLE.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF098YLP bigWig fold change over control ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF424AYM, ENCFF990ZOB 1314357853 ENCODE Processing Pipeline 003aea44cd1e1576259a312faab447ce https://www.encodeproject.org/files/ENCFF098YLP/@@download/ENCFF098YLP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF996DAB bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF130RDX, ENCFF424AYM, ENCFF990ZOB 7376876 ENCODE Processing Pipeline e5bd2c484aaa549f135b6ae7525a4173 https://www.encodeproject.org/files/ENCFF996DAB/@@download/ENCFF996DAB.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF315MUK bigWig signal p-value ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF130RDX, ENCFF424AYM, ENCFF990ZOB 1413604365 ENCODE Processing Pipeline 1e9b95ed0baef2f33e0de2d6cb80fec7 https://www.encodeproject.org/files/ENCFF315MUK/@@download/ENCFF315MUK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF606TEA bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF130RDX, ENCFF990ZOB 7210069 ENCODE Processing Pipeline 48f782a7be2f1c2cbeb3286ef0fcc710 https://www.encodeproject.org/files/ENCFF606TEA/@@download/ENCFF606TEA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF956DAP bigBed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF606TEA 13008202 ENCODE Processing Pipeline 96852c14c791f8072d3ec9b56badd793 https://www.encodeproject.org/files/ENCFF956DAP/@@download/ENCFF956DAP.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF080ATC bigBed narrowPeak conservative idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF583QKD 284646 ENCODE Processing Pipeline 464ad905645a41c5f8a718e20a43899e https://www.encodeproject.org/files/ENCFF080ATC/@@download/ENCFF080ATC.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF039AMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF545RHH 334234 ENCODE Processing Pipeline e22de49623a4b610879a2eabb2791cba https://www.encodeproject.org/files/ENCFF039AMQ/@@download/ENCFF039AMQ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF307KBQ bigBed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF996DAB 12986745 ENCODE Processing Pipeline 95e5cf1cdd6c4fe9871181b91ec3e83a https://www.encodeproject.org/files/ENCFF307KBQ/@@download/ENCFF307KBQ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF583QKD bed narrowPeak conservative idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF415MTB, ENCFF606TEA, ENCFF996DAB 88975 ENCODE Processing Pipeline 7addb56110a37189923a726b167981d2 https://www.encodeproject.org/files/ENCFF583QKD/@@download/ENCFF583QKD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF545RHH bed narrowPeak optimal idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF415MTB, ENCFF606TEA, ENCFF996DAB 114029 ENCODE Processing Pipeline 5ba0b64c3abc78bf61a940ba47b5cb4f https://www.encodeproject.org/files/ENCFF545RHH/@@download/ENCFF545RHH.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF850OUI bam unfiltered alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 100 ENCFF607RXB, ENCFF633AET, ENCFF643CGH 6740493697 ENCODE Processing Pipeline 9d3f849233154a9c9e63280cfad04903 https://www.encodeproject.org/files/ENCFF850OUI/@@download/ENCFF850OUI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF831QFF bam unfiltered alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 100 ENCFF111REI, ENCFF554XIX, ENCFF643CGH 8731621149 ENCODE Processing Pipeline 403575aa911c617eafeb15c392b3df09 https://www.encodeproject.org/files/ENCFF831QFF/@@download/ENCFF831QFF.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF165STC bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 100 ENCFF607RXB, ENCFF633AET, ENCFF643CGH 5350483465 ENCODE Processing Pipeline 0ebed50d70a6cac077c9e6a59177a36c https://www.encodeproject.org/files/ENCFF165STC/@@download/ENCFF165STC.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF694KHP bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 100 ENCFF111REI, ENCFF554XIX, ENCFF643CGH 6447864103 ENCODE Processing Pipeline d58d544cfa594c433a2c71bac9632e7c https://www.encodeproject.org/files/ENCFF694KHP/@@download/ENCFF694KHP.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF164NGL bigWig signal p-value ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF165STC, ENCFF680XQR 1207494753 ENCODE Processing Pipeline 3a52b1b24158b2e592fb880797e8c974 https://www.encodeproject.org/files/ENCFF164NGL/@@download/ENCFF164NGL.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF060GGE bigWig signal p-value ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF680XQR, ENCFF694KHP 1429242735 ENCODE Processing Pipeline 4dbf133ff127cdff0805ebb73eb6488f https://www.encodeproject.org/files/ENCFF060GGE/@@download/ENCFF060GGE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF926DOR bigWig signal p-value ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF165STC, ENCFF680XQR, ENCFF694KHP 1406981421 ENCODE Processing Pipeline 09e35d0cf6e1a6dfe8586841d9303ff8 https://www.encodeproject.org/files/ENCFF926DOR/@@download/ENCFF926DOR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF975PXF bigWig fold change over control ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF165STC, ENCFF680XQR 1304314924 ENCODE Processing Pipeline a3db3c05418974caf994c585b34744ba https://www.encodeproject.org/files/ENCFF975PXF/@@download/ENCFF975PXF.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF287LBS bigWig fold change over control ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF680XQR, ENCFF694KHP 1422958312 ENCODE Processing Pipeline 557cf428bcb1dcbaba3799b5a87cc58a https://www.encodeproject.org/files/ENCFF287LBS/@@download/ENCFF287LBS.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF413LVA bigWig fold change over control ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF165STC, ENCFF680XQR, ENCFF694KHP 1982508925 ENCODE Processing Pipeline 642a53bc209a1ca08cf8cedeed96aace https://www.encodeproject.org/files/ENCFF413LVA/@@download/ENCFF413LVA.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF992JZU bigBed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF385SWE 13023740 ENCODE Processing Pipeline 9e309e0ac3783c75faa59151ab1166f4 https://www.encodeproject.org/files/ENCFF992JZU/@@download/ENCFF992JZU.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF871DUH bigBed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF894OHV 13007133 ENCODE Processing Pipeline 03160417a15d6d603f4612680d22fe23 https://www.encodeproject.org/files/ENCFF871DUH/@@download/ENCFF871DUH.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF970WRP bed narrowPeak conservative idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF222THM, ENCFF385SWE, ENCFF419RSJ, ENCFF894OHV 88583 ENCODE Processing Pipeline ac89010dd33b4372f59bfc4648a8ef6e https://www.encodeproject.org/files/ENCFF970WRP/@@download/ENCFF970WRP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF865OKF bed narrowPeak optimal idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF222THM, ENCFF385SWE, ENCFF419RSJ, ENCFF894OHV 114417 ENCODE Processing Pipeline 51caa09eff3bc25c819286358f93a8e0 https://www.encodeproject.org/files/ENCFF865OKF/@@download/ENCFF865OKF.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF375BIG bigBed narrowPeak optimal idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF865OKF 339175 ENCODE Processing Pipeline 6dd438cc2133861c50a595ac881c2f17 https://www.encodeproject.org/files/ENCFF375BIG/@@download/ENCFF375BIG.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF369RMT bigBed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF222THM 13010465 ENCODE Processing Pipeline e3c87edba2238462eadf153925e1a8b3 https://www.encodeproject.org/files/ENCFF369RMT/@@download/ENCFF369RMT.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF899TCQ bigBed narrowPeak conservative idr thresholded peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF970WRP 285351 ENCODE Processing Pipeline 7810c43adc1a95e1c13c1ddee15b8f7b https://www.encodeproject.org/files/ENCFF899TCQ/@@download/ENCFF899TCQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF222THM bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF165STC, ENCFF680XQR 6997255 ENCODE Processing Pipeline 4b3663d1fdd04490087f068dfaafd16a https://www.encodeproject.org/files/ENCFF222THM/@@download/ENCFF222THM.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF385SWE bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF680XQR, ENCFF694KHP 7179481 ENCODE Processing Pipeline f5d0c7b825c7ea06024088e686b61c36 https://www.encodeproject.org/files/ENCFF385SWE/@@download/ENCFF385SWE.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF894OHV bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF165STC, ENCFF680XQR, ENCFF694KHP 7378120 ENCODE Processing Pipeline 003a89f5c4e821d3a3a0130d1e63f5b1 https://www.encodeproject.org/files/ENCFF894OHV/@@download/ENCFF894OHV.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF901EEE fastq reads ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF890YAG 1824068941 Richard Myers, HAIB b10de4bb9703a430045c5c1ecbe686d9 https://www.encodeproject.org/files/ENCFF901EEE/@@download/ENCFF901EEE.fastq.gz Illumina HiSeq 2000 /files/ENCFF676OSC/ released antibody characterized with exemption experiment not submitted to GEO ENCFF890YAG fastq reads ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF901EEE 1766335004 Richard Myers, HAIB 9527b0cfe1c3f0c326f8c4718e44971a https://www.encodeproject.org/files/ENCFF890YAG/@@download/ENCFF890YAG.fastq.gz Illumina HiSeq 2000 /files/ENCFF944LNC/ released antibody characterized with exemption experiment not submitted to GEO ENCFF038AFM bam unfiltered alignments ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF807MUK, ENCFF890YAG, ENCFF901EEE 4069622565 ENCODE Processing Pipeline 9f8cc485421fc4b93deaa95b893e8e17 https://www.encodeproject.org/files/ENCFF038AFM/@@download/ENCFF038AFM.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF894CZE bam unfiltered alignments ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF643CGH, ENCFF890YAG, ENCFF901EEE 4076771782 ENCODE Processing Pipeline a3582bb7993c9a9acbc3994a970f732f https://www.encodeproject.org/files/ENCFF894CZE/@@download/ENCFF894CZE.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF475VPO bam alignments ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF807MUK, ENCFF890YAG, ENCFF901EEE 3229689617 ENCODE Processing Pipeline 81e98b5b6b5b0bcd28b8ba8a704a8f49 https://www.encodeproject.org/files/ENCFF475VPO/@@download/ENCFF475VPO.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF421FQC bam alignments ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF643CGH, ENCFF890YAG, ENCFF901EEE 3229558051 ENCODE Processing Pipeline 247c8851ec13aac3d5b538264e327dfe https://www.encodeproject.org/files/ENCFF421FQC/@@download/ENCFF421FQC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF684NRT bigWig signal p-value ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF421FQC, ENCFF544LSH 991960125 ENCODE Processing Pipeline 534e7ebb9f364bb936237f214b53b2c5 https://www.encodeproject.org/files/ENCFF684NRT/@@download/ENCFF684NRT.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF251GJD bed narrowPeak peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF421FQC, ENCFF544LSH 6772863 ENCODE Processing Pipeline 4d72b8e5468517654cc33cf863e3eeff https://www.encodeproject.org/files/ENCFF251GJD/@@download/ENCFF251GJD.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF783NHB bigBed narrowPeak peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF251GJD 13362718 ENCODE Processing Pipeline 2d8c9aa8f4bc6df3a2fb4c195f3d69f9 https://www.encodeproject.org/files/ENCFF783NHB/@@download/ENCFF783NHB.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF805OFW bigWig fold change over control ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF421FQC, ENCFF544LSH 979012970 ENCODE Processing Pipeline 5c282b1092e66fb6645bdb11b9a00cd6 https://www.encodeproject.org/files/ENCFF805OFW/@@download/ENCFF805OFW.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF109VPF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF251GJD, ENCFF419RSJ 1451929 ENCODE Processing Pipeline 9b279cd511960c751b320bf3f966d661 https://www.encodeproject.org/files/ENCFF109VPF/@@download/ENCFF109VPF.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF051ALY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF109VPF 2584180 ENCODE Processing Pipeline 8b7ddbaf114189874db93e04c7dc3b71 https://www.encodeproject.org/files/ENCFF051ALY/@@download/ENCFF051ALY.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF854AET bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF515ANF 2567674 ENCODE Processing Pipeline 50ae75d2a6ebc8509418061899ff1808 https://www.encodeproject.org/files/ENCFF854AET/@@download/ENCFF854AET.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF753OGK bigWig fold change over control ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF179GVV, ENCFF475VPO 981628984 ENCODE Processing Pipeline 2236e78f31d610cc784bf18dde460baf https://www.encodeproject.org/files/ENCFF753OGK/@@download/ENCFF753OGK.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF948YBA bigBed narrowPeak peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF852XOL 13389989 ENCODE Processing Pipeline b2dca1125d0753c7e940e805036cd3eb https://www.encodeproject.org/files/ENCFF948YBA/@@download/ENCFF948YBA.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF852XOL bed narrowPeak peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF179GVV, ENCFF475VPO 6800977 ENCODE Processing Pipeline 9a6fe302a1914b332647992ac5bd310f https://www.encodeproject.org/files/ENCFF852XOL/@@download/ENCFF852XOL.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF331CWK bigWig signal p-value ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF179GVV, ENCFF475VPO 1043720128 ENCODE Processing Pipeline 3c877adf1cbb1df25ab6b8ee7ee06658 https://www.encodeproject.org/files/ENCFF331CWK/@@download/ENCFF331CWK.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF515ANF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF852XOL 1439798 ENCODE Processing Pipeline 541befc8306451243eb7131bc608fb97 https://www.encodeproject.org/files/ENCFF515ANF/@@download/ENCFF515ANF.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF097CTQ fastq reads ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF321GWR 3023008882 Richard Myers, HAIB df28ca02b123ff96af536084026d2a34 https://www.encodeproject.org/files/ENCFF097CTQ/@@download/ENCFF097CTQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF949BQT/ released antibody characterized with exemption experiment not submitted to GEO ENCFF321GWR fastq reads ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF097CTQ 3161998315 Richard Myers, HAIB 05383d4114d239b59d58321c18f573d4 https://www.encodeproject.org/files/ENCFF321GWR/@@download/ENCFF321GWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF217QQZ/ released antibody characterized with exemption experiment not submitted to GEO ENCFF848MIK bam unfiltered alignments ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF097CTQ, ENCFF321GWR, ENCFF807MUK 7183349571 ENCODE Processing Pipeline 0be6c5b888cfc6754dd4126cb83c32eb https://www.encodeproject.org/files/ENCFF848MIK/@@download/ENCFF848MIK.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF036PVG bam alignments ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF097CTQ, ENCFF321GWR, ENCFF807MUK 5074812429 ENCODE Processing Pipeline 236325343e2af05275f674d70e2ebdac https://www.encodeproject.org/files/ENCFF036PVG/@@download/ENCFF036PVG.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF430QKJ bam alignments ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF097CTQ, ENCFF321GWR, ENCFF643CGH 5078688686 ENCODE Processing Pipeline 30de3f6c2a54d653b97d77feea05343a https://www.encodeproject.org/files/ENCFF430QKJ/@@download/ENCFF430QKJ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF865FVR bam unfiltered alignments ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF097CTQ, ENCFF321GWR, ENCFF643CGH 7210671462 ENCODE Processing Pipeline 5fa39b69c7331b127417625403cf21e3 https://www.encodeproject.org/files/ENCFF865FVR/@@download/ENCFF865FVR.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF165XPM bigWig signal p-value ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF430QKJ, ENCFF572OLC 2063131593 ENCODE Processing Pipeline 33a230562e05d049fbb9f1d849ef3b53 https://www.encodeproject.org/files/ENCFF165XPM/@@download/ENCFF165XPM.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF530CKE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF999DBK 760526 ENCODE Processing Pipeline b1bca71215e65c018c9a8c9f4ec1bd3a https://www.encodeproject.org/files/ENCFF530CKE/@@download/ENCFF530CKE.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF828MFS bigBed narrowPeak peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF333BFY 11606010 ENCODE Processing Pipeline 2d8bbdfac26e2b548d1ce879350293eb https://www.encodeproject.org/files/ENCFF828MFS/@@download/ENCFF828MFS.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF333BFY bed narrowPeak peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF430QKJ, ENCFF572OLC 7065330 ENCODE Processing Pipeline 4015f6cb7c649c79441e23a2c73e8724 https://www.encodeproject.org/files/ENCFF333BFY/@@download/ENCFF333BFY.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF318NHJ bigWig fold change over control ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF430QKJ, ENCFF572OLC 2018615866 ENCODE Processing Pipeline e321e69dfa57884c59d9eb926874f4f7 https://www.encodeproject.org/files/ENCFF318NHJ/@@download/ENCFF318NHJ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF999DBK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF333BFY, ENCFF419RSJ 441321 ENCODE Processing Pipeline b4246199e0e6c629fca9464e369c6ef3 https://www.encodeproject.org/files/ENCFF999DBK/@@download/ENCFF999DBK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF833PAL bigBed narrowPeak peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF751MNI 11587881 ENCODE Processing Pipeline c7c0239801a22c2ff49af5196607bbe1 https://www.encodeproject.org/files/ENCFF833PAL/@@download/ENCFF833PAL.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF251KBL bigWig signal p-value ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF003VUV, ENCFF036PVG 2068142748 ENCODE Processing Pipeline cd198abe3f122f9666b1e4dc00a17f42 https://www.encodeproject.org/files/ENCFF251KBL/@@download/ENCFF251KBL.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF751MNI bed narrowPeak peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF003VUV, ENCFF036PVG 7063991 ENCODE Processing Pipeline eecdf6db6da53ab478b31050f2298412 https://www.encodeproject.org/files/ENCFF751MNI/@@download/ENCFF751MNI.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF792QGT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF751MNI 445448 ENCODE Processing Pipeline 15c311c339ae613c5ca6b8c1a083460f https://www.encodeproject.org/files/ENCFF792QGT/@@download/ENCFF792QGT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF128YAW bigWig fold change over control ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF003VUV, ENCFF036PVG 1953441989 ENCODE Processing Pipeline 5c2c57e50370a8a50fa0c32724cb54bc https://www.encodeproject.org/files/ENCFF128YAW/@@download/ENCFF128YAW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF635NRQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF792QGT 760343 ENCODE Processing Pipeline 3bc24fcbfec1eeafe1c9dcb5cf5945a6 https://www.encodeproject.org/files/ENCFF635NRQ/@@download/ENCFF635NRQ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF986XBL bam unfiltered alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 100 ENCFF244KAZ, ENCFF318DFZ, ENCFF807MUK 7049844070 ENCODE Processing Pipeline 7c72685e8ab9936abe337ad038b5e92b https://www.encodeproject.org/files/ENCFF986XBL/@@download/ENCFF986XBL.bam hg19 released ENCFF334VEI bam unfiltered alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 100 ENCFF487XNJ, ENCFF780PZZ, ENCFF807MUK 5993445924 ENCODE Processing Pipeline 5b66d03a7f43eedaa4fefcc4d54c3387 https://www.encodeproject.org/files/ENCFF334VEI/@@download/ENCFF334VEI.bam hg19 released ENCFF487XNJ fastq reads ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 1 100 paired-ended 2 ENCFF780PZZ 2733782079 Michael Snyder, Stanford e106c2d4ceab65c34600021ad68d25ce SRA:SRR6212833 https://www.encodeproject.org/files/ENCFF487XNJ/@@download/ENCFF487XNJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF318DFZ fastq reads ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 1 100 paired-ended 1 ENCFF244KAZ 3184390941 Michael Snyder, Stanford 5f99f032a723156dd06b626f6436f2af SRA:SRR6212834 https://www.encodeproject.org/files/ENCFF318DFZ/@@download/ENCFF318DFZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF780PZZ fastq reads ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 1 100 paired-ended 1 ENCFF487XNJ 2653714214 Michael Snyder, Stanford 92eff90d9e60111a8841f91c18ba44b5 SRA:SRR6212833 https://www.encodeproject.org/files/ENCFF780PZZ/@@download/ENCFF780PZZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF244KAZ fastq reads ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 1 100 paired-ended 2 ENCFF318DFZ 3266639905 Michael Snyder, Stanford 369ead45fb1ce0093232a751f3604cb1 SRA:SRR6212834 https://www.encodeproject.org/files/ENCFF244KAZ/@@download/ENCFF244KAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF354WTX bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 100 ENCFF487XNJ, ENCFF780PZZ, ENCFF807MUK 4923995344 ENCODE Processing Pipeline 2e9c558eedaac725eded0a5248fcbdf0 https://www.encodeproject.org/files/ENCFF354WTX/@@download/ENCFF354WTX.bam hg19 released ENCFF981SIA bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 100 ENCFF244KAZ, ENCFF318DFZ, ENCFF807MUK 5835469846 ENCODE Processing Pipeline ef5056288c202c4d1ef48a28c9aea4cb https://www.encodeproject.org/files/ENCFF981SIA/@@download/ENCFF981SIA.bam hg19 released ENCFF012TIZ bigWig signal p-value ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF354WTX, ENCFF449NNE 1255058038 ENCODE Processing Pipeline f59cc1fdf73694c1784d474c55b439e6 https://www.encodeproject.org/files/ENCFF012TIZ/@@download/ENCFF012TIZ.bigWig hg19 released ENCFF464JUH bigWig signal p-value ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF981SIA, ENCFF999EQI 1014005993 ENCODE Processing Pipeline 8d1776cb4a3e488119bb404383375653 https://www.encodeproject.org/files/ENCFF464JUH/@@download/ENCFF464JUH.bigWig hg19 released ENCFF636YUN bigWig signal p-value ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF354WTX, ENCFF449NNE, ENCFF981SIA, ENCFF999EQI 2177879514 ENCODE Processing Pipeline fd26f18ee9421b2c17abfba6453d8c18 https://www.encodeproject.org/files/ENCFF636YUN/@@download/ENCFF636YUN.bigWig hg19 released ENCFF614LBI bigWig fold change over control ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF354WTX, ENCFF449NNE 1232858061 ENCODE Processing Pipeline e87e079fd11c48318c458ba3002e2448 https://www.encodeproject.org/files/ENCFF614LBI/@@download/ENCFF614LBI.bigWig hg19 released ENCFF818UJL bigWig fold change over control ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF981SIA, ENCFF999EQI 1238858548 ENCODE Processing Pipeline 52ce1ea5cb46f864debac7353584f0ae https://www.encodeproject.org/files/ENCFF818UJL/@@download/ENCFF818UJL.bigWig hg19 released ENCFF309WWF bigWig fold change over control ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF354WTX, ENCFF449NNE, ENCFF981SIA, ENCFF999EQI 2215262056 ENCODE Processing Pipeline 345f8157d7753301830a2e8e674f4929 https://www.encodeproject.org/files/ENCFF309WWF/@@download/ENCFF309WWF.bigWig hg19 released ENCFF205IWA bed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF354WTX, ENCFF449NNE 6139135 ENCODE Processing Pipeline 7fff0d0892d581e96fd4481e3020cfe7 https://www.encodeproject.org/files/ENCFF205IWA/@@download/ENCFF205IWA.bed.gz hg19 released ENCFF281WBT bed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF981SIA, ENCFF999EQI 6406941 ENCODE Processing Pipeline 9f7446bcc1c8ed2ca6b6348571c8411a https://www.encodeproject.org/files/ENCFF281WBT/@@download/ENCFF281WBT.bed.gz hg19 released ENCFF724KFJ bed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF354WTX, ENCFF449NNE, ENCFF981SIA, ENCFF999EQI 7154869 ENCODE Processing Pipeline e601735909fc7a972a0d82b11beb4964 https://www.encodeproject.org/files/ENCFF724KFJ/@@download/ENCFF724KFJ.bed.gz hg19 released ENCFF297VOK bigBed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF205IWA 11221215 ENCODE Processing Pipeline f3b36916a48c48966893d3bb83aba60f https://www.encodeproject.org/files/ENCFF297VOK/@@download/ENCFF297VOK.bigBed hg19 released ENCFF184MSH bigBed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF281WBT 11313412 ENCODE Processing Pipeline 171f00b77ca766b433ee7289cf31e67c https://www.encodeproject.org/files/ENCFF184MSH/@@download/ENCFF184MSH.bigBed hg19 released ENCFF207BRF bigBed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF724KFJ 11337161 ENCODE Processing Pipeline d542593fa2efb7bed0c0bfab9cd114cd https://www.encodeproject.org/files/ENCFF207BRF/@@download/ENCFF207BRF.bigBed hg19 released ENCFF862BRX bed narrowPeak conservative idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF001TDO, ENCFF205IWA, ENCFF281WBT, ENCFF724KFJ 28275 ENCODE Processing Pipeline ce7cea17f570f1289c2cc2c1f0ccdb5a https://www.encodeproject.org/files/ENCFF862BRX/@@download/ENCFF862BRX.bed.gz hg19 released ENCFF726VPZ bigBed narrowPeak conservative idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF862BRX 102400 ENCODE Processing Pipeline 307e96083a7624870fb851073822dbb3 https://www.encodeproject.org/files/ENCFF726VPZ/@@download/ENCFF726VPZ.bigBed hg19 released ENCFF783APK bigBed narrowPeak optimal idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF132QLW 130513 ENCODE Processing Pipeline 441ba246fe50b85ff243595b5c35cb48 https://www.encodeproject.org/files/ENCFF783APK/@@download/ENCFF783APK.bigBed hg19 released ENCFF132QLW bed narrowPeak optimal idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF001TDO, ENCFF205IWA, ENCFF281WBT, ENCFF724KFJ 47424 ENCODE Processing Pipeline 5a36af6c01b964b6983e7d773ad1b220 https://www.encodeproject.org/files/ENCFF132QLW/@@download/ENCFF132QLW.bed.gz hg19 released ENCFF286UHQ bam unfiltered alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 100 ENCFF487XNJ, ENCFF643CGH, ENCFF780PZZ 6006177092 ENCODE Processing Pipeline 6fb09babcde77d30bcb11c5914f59087 https://www.encodeproject.org/files/ENCFF286UHQ/@@download/ENCFF286UHQ.bam GRCh38 released ENCFF811RKC bam unfiltered alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 100 ENCFF244KAZ, ENCFF318DFZ, ENCFF643CGH 7064054290 ENCODE Processing Pipeline 50076247badf6c76bad72ed015f4dae5 https://www.encodeproject.org/files/ENCFF811RKC/@@download/ENCFF811RKC.bam GRCh38 released ENCFF407YXS bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 100 ENCFF487XNJ, ENCFF643CGH, ENCFF780PZZ 4937379476 ENCODE Processing Pipeline 7bbc0ea3e633cc7fff82405d49b892ee https://www.encodeproject.org/files/ENCFF407YXS/@@download/ENCFF407YXS.bam GRCh38 released ENCFF151AWK bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 100 ENCFF244KAZ, ENCFF318DFZ, ENCFF643CGH 5852061186 ENCODE Processing Pipeline 7dab7ed868f22cacb04f3b6bdf4c2bcc https://www.encodeproject.org/files/ENCFF151AWK/@@download/ENCFF151AWK.bam GRCh38 released ENCFF933DZE bigWig signal p-value ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF190EPQ, ENCFF407YXS 1235877249 ENCODE Processing Pipeline abdaec1a13c3d80b17c3915cec2c3a95 https://www.encodeproject.org/files/ENCFF933DZE/@@download/ENCFF933DZE.bigWig GRCh38 released ENCFF008LHR bigWig signal p-value ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF151AWK, ENCFF190EPQ, ENCFF950AXC 1663732962 ENCODE Processing Pipeline 1cb07390c5052bbabd69ea7413463e4c https://www.encodeproject.org/files/ENCFF008LHR/@@download/ENCFF008LHR.bigWig GRCh38 released ENCFF217IAF bigWig signal p-value ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF151AWK, ENCFF190EPQ, ENCFF407YXS, ENCFF950AXC 1967068450 ENCODE Processing Pipeline 480ffdffe0d7f504ff8fdcd699d80186 https://www.encodeproject.org/files/ENCFF217IAF/@@download/ENCFF217IAF.bigWig GRCh38 released ENCFF441FID bigWig fold change over control ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF190EPQ, ENCFF407YXS 1229926632 ENCODE Processing Pipeline 57b693ce6442a094a91d967fe27ffc35 https://www.encodeproject.org/files/ENCFF441FID/@@download/ENCFF441FID.bigWig GRCh38 released ENCFF115YNY bigWig fold change over control ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF151AWK, ENCFF190EPQ, ENCFF950AXC 1745584525 ENCODE Processing Pipeline 722f8032f55d2c08feea226e01cad839 https://www.encodeproject.org/files/ENCFF115YNY/@@download/ENCFF115YNY.bigWig GRCh38 released ENCFF529UHP bigWig fold change over control ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF151AWK, ENCFF190EPQ, ENCFF407YXS, ENCFF950AXC 2187901590 ENCODE Processing Pipeline d24f8803d29dd01ae5d0adbf3862848d https://www.encodeproject.org/files/ENCFF529UHP/@@download/ENCFF529UHP.bigWig GRCh38 released ENCFF381DUL bigBed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF764GJJ 11357610 ENCODE Processing Pipeline 42d245c4adca88d7fb3d2b5c71862d2b https://www.encodeproject.org/files/ENCFF381DUL/@@download/ENCFF381DUL.bigBed GRCh38 released ENCFF290LBI bed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF190EPQ, ENCFF407YXS 5912564 ENCODE Processing Pipeline 195045d4c60a8cc512f430fc5d355642 https://www.encodeproject.org/files/ENCFF290LBI/@@download/ENCFF290LBI.bed.gz GRCh38 released ENCFF264HBR bigBed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 ENCFF290LBI 11223755 ENCODE Processing Pipeline 9a65645ec4789c729f76f0c43d181dd8 https://www.encodeproject.org/files/ENCFF264HBR/@@download/ENCFF264HBR.bigBed GRCh38 released ENCFF264WVY bigBed narrowPeak optimal idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF162TPR 139036 ENCODE Processing Pipeline c37c4c05b4ac0a9c53b16bcf6f809683 https://www.encodeproject.org/files/ENCFF264WVY/@@download/ENCFF264WVY.bigBed GRCh38 released ENCFF131EUY bed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF151AWK, ENCFF190EPQ, ENCFF950AXC 6500599 ENCODE Processing Pipeline 331b99afebd706d681b04a740aa32685 https://www.encodeproject.org/files/ENCFF131EUY/@@download/ENCFF131EUY.bed.gz GRCh38 released ENCFF619ULR bigBed narrowPeak conservative idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF748JYG 115401 ENCODE Processing Pipeline 05ce5884893373171d2d0f5c1c3f8fdc https://www.encodeproject.org/files/ENCFF619ULR/@@download/ENCFF619ULR.bigBed GRCh38 released ENCFF748JYG bed narrowPeak conservative idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF131EUY, ENCFF290LBI, ENCFF419RSJ, ENCFF764GJJ 35174 ENCODE Processing Pipeline 24cd18a1180ae667c673fe42994af337 https://www.encodeproject.org/files/ENCFF748JYG/@@download/ENCFF748JYG.bed.gz GRCh38 released ENCFF764GJJ bed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF151AWK, ENCFF190EPQ, ENCFF407YXS, ENCFF950AXC 7113248 ENCODE Processing Pipeline 0e2692c5531590f72b7a0110404fa769 https://www.encodeproject.org/files/ENCFF764GJJ/@@download/ENCFF764GJJ.bed.gz GRCh38 released ENCFF778OOP bigBed narrowPeak peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 ENCFF131EUY 11416606 ENCODE Processing Pipeline 0d8bd1969dd616ace1860a13ca3d59ba https://www.encodeproject.org/files/ENCFF778OOP/@@download/ENCFF778OOP.bigBed GRCh38 released ENCFF162TPR bed narrowPeak optimal idr thresholded peaks ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3, 4 ENCFF131EUY, ENCFF290LBI, ENCFF419RSJ, ENCFF764GJJ 50617 ENCODE Processing Pipeline c75ebfd7a21b70030904b741a900fc96 https://www.encodeproject.org/files/ENCFF162TPR/@@download/ENCFF162TPR.bed.gz GRCh38 released ENCFF920QMA fastq reads ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF513RVZ 3451283868 Richard Myers, HAIB 0feb0a06cb82bc1eab0d8f8a5cd9435e SRA:SRR6214038 https://www.encodeproject.org/files/ENCFF920QMA/@@download/ENCFF920QMA.fastq.gz Illumina HiSeq 2000 /files/ENCFF353DLW/ released antibody characterized with exemption missing control alignments ENCFF513RVZ fastq reads ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF920QMA 3611084352 Richard Myers, HAIB 43b73bc4d38ba000fd226e3cb97937a7 SRA:SRR6214038 https://www.encodeproject.org/files/ENCFF513RVZ/@@download/ENCFF513RVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF214RDT/ released antibody characterized with exemption missing control alignments ENCFF759CQL bam unfiltered alignments ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF513RVZ, ENCFF807MUK, ENCFF920QMA 8227512994 ENCODE Processing Pipeline c51e88874f862212e5350a10e1324e01 https://www.encodeproject.org/files/ENCFF759CQL/@@download/ENCFF759CQL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF259CUG bam alignments ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF513RVZ, ENCFF807MUK, ENCFF920QMA 6038242090 ENCODE Processing Pipeline 81a7daeab3300a38975ede0c78d6ee40 https://www.encodeproject.org/files/ENCFF259CUG/@@download/ENCFF259CUG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF531DYO bam unfiltered alignments ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF513RVZ, ENCFF643CGH, ENCFF920QMA 8261271237 ENCODE Processing Pipeline dcbe82c6ba71eafc07a9baf565ae123e https://www.encodeproject.org/files/ENCFF531DYO/@@download/ENCFF531DYO.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF933WJH bam alignments ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF513RVZ, ENCFF643CGH, ENCFF920QMA 6044955728 ENCODE Processing Pipeline 895a777fb870cb24e7c6b26b674076bb https://www.encodeproject.org/files/ENCFF933WJH/@@download/ENCFF933WJH.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF149VRW bed narrowPeak peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF259CUG 6579090 ENCODE Processing Pipeline 3dcc54703f8b206b84df53c4c3c2aae9 https://www.encodeproject.org/files/ENCFF149VRW/@@download/ENCFF149VRW.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF704KAE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF149VRW 55182 ENCODE Processing Pipeline 0deb721d7215c93137d5fd7c7b38b75c https://www.encodeproject.org/files/ENCFF704KAE/@@download/ENCFF704KAE.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF295ECG bigBed narrowPeak peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF149VRW 11827687 ENCODE Processing Pipeline 0246f1d3b2c7aadb13242d7524bf1f8e https://www.encodeproject.org/files/ENCFF295ECG/@@download/ENCFF295ECG.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF298QOQ bigWig signal p-value ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF259CUG 1922051502 ENCODE Processing Pipeline 5ddcf889c2657d41c6644fb1f040045e https://www.encodeproject.org/files/ENCFF298QOQ/@@download/ENCFF298QOQ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF092BFT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF704KAE 154184 ENCODE Processing Pipeline e71ceefda6114d424e2fbc29115cc62a https://www.encodeproject.org/files/ENCFF092BFT/@@download/ENCFF092BFT.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF841TPJ bigWig fold change over control ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF259CUG 2076740715 ENCODE Processing Pipeline 281fb45ea10e710b95fe4afc892a33b5 https://www.encodeproject.org/files/ENCFF841TPJ/@@download/ENCFF841TPJ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF390MAI bigWig signal p-value ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF933WJH 2109335554 ENCODE Processing Pipeline c3dd070ae288384a4dd61ffb569f9d42 https://www.encodeproject.org/files/ENCFF390MAI/@@download/ENCFF390MAI.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF208SZB bed narrowPeak peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF933WJH 6583515 ENCODE Processing Pipeline b2f1a2b99464be1e53935b40da04d127 https://www.encodeproject.org/files/ENCFF208SZB/@@download/ENCFF208SZB.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF766NBK bigBed narrowPeak peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF208SZB 11846774 ENCODE Processing Pipeline 175f4d0b8be3b43b2d1d06e529e3d898 https://www.encodeproject.org/files/ENCFF766NBK/@@download/ENCFF766NBK.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF266KJH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF208SZB, ENCFF419RSJ 55153 ENCODE Processing Pipeline 503c228998b2297ca9420c5a2ddca417 https://www.encodeproject.org/files/ENCFF266KJH/@@download/ENCFF266KJH.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF184LRB bigWig fold change over control ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF933WJH 2067969090 ENCODE Processing Pipeline 70237edcdf74c931fafbe3a33ad52d8c https://www.encodeproject.org/files/ENCFF184LRB/@@download/ENCFF184LRB.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF936PEI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF266KJH 155945 ENCODE Processing Pipeline 8509ed15e75b2ab4096cdcccd1f7aa82 https://www.encodeproject.org/files/ENCFF936PEI/@@download/ENCFF936PEI.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF223CAR fastq reads ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF680WFP 1529542794 Richard Myers, HAIB 90f227d956f680d644d695f34796be1e SRA:SRR6213116 https://www.encodeproject.org/files/ENCFF223CAR/@@download/ENCFF223CAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF383VKC/ released antibody characterized with exemption missing control alignments ENCFF680WFP fastq reads ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF223CAR 1559487604 Richard Myers, HAIB 18900fa1e5c35ded15ad9f9692672cf4 SRA:SRR6213116 https://www.encodeproject.org/files/ENCFF680WFP/@@download/ENCFF680WFP.fastq.gz Illumina HiSeq 2000 /files/ENCFF793LZO/ released antibody characterized with exemption missing control alignments ENCFF855ASQ bam unfiltered alignments ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF223CAR, ENCFF680WFP, ENCFF807MUK 3790435478 ENCODE Processing Pipeline f14c47a391934d053661bffb6d8f2454 https://www.encodeproject.org/files/ENCFF855ASQ/@@download/ENCFF855ASQ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF665OQP bam unfiltered alignments ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF223CAR, ENCFF643CGH, ENCFF680WFP 3808173179 ENCODE Processing Pipeline 0f668172f3a7b8cb573d3c46f476a291 https://www.encodeproject.org/files/ENCFF665OQP/@@download/ENCFF665OQP.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF123JQA bam alignments ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF223CAR, ENCFF643CGH, ENCFF680WFP 2883229961 ENCODE Processing Pipeline e5e1501bbee8e5e4b69ef1e2711ff6a9 https://www.encodeproject.org/files/ENCFF123JQA/@@download/ENCFF123JQA.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF251UXN bam alignments ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF223CAR, ENCFF680WFP, ENCFF807MUK 2880522831 ENCODE Processing Pipeline 98b3adb1d45a297dde40fc24b19137f0 https://www.encodeproject.org/files/ENCFF251UXN/@@download/ENCFF251UXN.bam hg19 released antibody characterized with exemption missing control alignments ENCFF972ODR bed narrowPeak peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF123JQA 5805024 ENCODE Processing Pipeline 625c0244cef6c25bef9d5ba07bd28106 https://www.encodeproject.org/files/ENCFF972ODR/@@download/ENCFF972ODR.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF392YZJ bigWig signal p-value ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF123JQA 1683240064 ENCODE Processing Pipeline a3078d1faa6a867b5501bc888ecfc7d5 https://www.encodeproject.org/files/ENCFF392YZJ/@@download/ENCFF392YZJ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF091KSY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF972ODR 77892 ENCODE Processing Pipeline c4f75eb2668361e573930499973d00b5 https://www.encodeproject.org/files/ENCFF091KSY/@@download/ENCFF091KSY.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF439OWG bigWig fold change over control ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF123JQA 1534924992 ENCODE Processing Pipeline 4517141f5873dd6e5fe5de6785d4bfdf https://www.encodeproject.org/files/ENCFF439OWG/@@download/ENCFF439OWG.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF116DMQ bigBed narrowPeak peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF972ODR 11798193 ENCODE Processing Pipeline 812215adf2bb9e7009b41b3bf515af24 https://www.encodeproject.org/files/ENCFF116DMQ/@@download/ENCFF116DMQ.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF295HWU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF091KSY 190212 ENCODE Processing Pipeline ccc896888cbe8da2c9cf36b46492071e https://www.encodeproject.org/files/ENCFF295HWU/@@download/ENCFF295HWU.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF277OHA bigWig signal p-value ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF251UXN 1777573669 ENCODE Processing Pipeline 2831040662e190382992a6949d8488b6 https://www.encodeproject.org/files/ENCFF277OHA/@@download/ENCFF277OHA.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF092XDN bigWig fold change over control ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF251UXN 1458642605 ENCODE Processing Pipeline 153552355db324fd42d45832e9be54af https://www.encodeproject.org/files/ENCFF092XDN/@@download/ENCFF092XDN.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF885NNA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF038BWR 74598 ENCODE Processing Pipeline 79259b88bda6ba06d62d37ec88eb97fd https://www.encodeproject.org/files/ENCFF885NNA/@@download/ENCFF885NNA.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF547NSK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF885NNA 184025 ENCODE Processing Pipeline ccab994ac35b83bfa0938e3f51d56130 https://www.encodeproject.org/files/ENCFF547NSK/@@download/ENCFF547NSK.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF038BWR bed narrowPeak peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF251UXN 5797053 ENCODE Processing Pipeline 81dc193717ccd7b6e24037e8cf3defc4 https://www.encodeproject.org/files/ENCFF038BWR/@@download/ENCFF038BWR.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF760HWM bigBed narrowPeak peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF038BWR 11774566 ENCODE Processing Pipeline 6726c4834d4e9a66cdb62f7c158e31a9 https://www.encodeproject.org/files/ENCFF760HWM/@@download/ENCFF760HWM.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF259MWS fastq reads ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2353986569 Richard Myers, HAIB 0be5345f31821771421c4963f1fa3d71 SRA:SRR5338656 https://www.encodeproject.org/files/ENCFF259MWS/@@download/ENCFF259MWS.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF128OQA fastq reads ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1496443477 Richard Myers, HAIB dd46ad6d8918da54797fa7aeabc0f3e5 SRA:SRR5338655 https://www.encodeproject.org/files/ENCFF128OQA/@@download/ENCFF128OQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF734TON bam unfiltered alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 76 ENCFF128OQA, ENCFF643CGH 1615109423 ENCODE Processing Pipeline 8d4b78950d63e3815d45b037d4aeb066 https://www.encodeproject.org/files/ENCFF734TON/@@download/ENCFF734TON.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF192CZJ bam unfiltered alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 76 ENCFF128OQA, ENCFF807MUK 1612190861 ENCODE Processing Pipeline b0a6aaabf87196fb63db60fb474b766e https://www.encodeproject.org/files/ENCFF192CZJ/@@download/ENCFF192CZJ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961TAB bam unfiltered alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 76 ENCFF259MWS, ENCFF643CGH 2609474126 ENCODE Processing Pipeline 64d2a87ff4a845da6a2da54ad75df8b7 https://www.encodeproject.org/files/ENCFF961TAB/@@download/ENCFF961TAB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927VOZ bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 76 ENCFF128OQA, ENCFF643CGH 1255002795 ENCODE Processing Pipeline 4da1553dc2e7baa9686d1b93f849807e https://www.encodeproject.org/files/ENCFF927VOZ/@@download/ENCFF927VOZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF571MOX bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 76 ENCFF128OQA, ENCFF807MUK 1254520134 ENCODE Processing Pipeline 50684e1267aec5ad00e77d326b9aa271 https://www.encodeproject.org/files/ENCFF571MOX/@@download/ENCFF571MOX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF181SJU bam unfiltered alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 76 ENCFF259MWS, ENCFF807MUK 2604316084 ENCODE Processing Pipeline 05c77f04c6e57eabb664aa17089ae9e0 https://www.encodeproject.org/files/ENCFF181SJU/@@download/ENCFF181SJU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF736DHC bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 76 ENCFF259MWS, ENCFF643CGH 2020247244 ENCODE Processing Pipeline a1c7d846b3114906d41f18303c6437c8 https://www.encodeproject.org/files/ENCFF736DHC/@@download/ENCFF736DHC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362WTD bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 76 ENCFF259MWS, ENCFF807MUK 2019266720 ENCODE Processing Pipeline 9d94a142d666f4016a857124ddab09c0 https://www.encodeproject.org/files/ENCFF362WTD/@@download/ENCFF362WTD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF115BGO bigWig signal p-value ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF927VOZ 525937189 ENCODE Processing Pipeline 50c6eb8216b6d2c12055e37c0d6f3b51 https://www.encodeproject.org/files/ENCFF115BGO/@@download/ENCFF115BGO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF584GSK bigWig signal p-value ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF736DHC 699753364 ENCODE Processing Pipeline 7b1b3326ffa2c483c315048bcaab60e7 https://www.encodeproject.org/files/ENCFF584GSK/@@download/ENCFF584GSK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF437YML bigWig signal p-value ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF736DHC, ENCFF927VOZ 639462265 ENCODE Processing Pipeline 956f63620af4be5da463efab089f08e6 https://www.encodeproject.org/files/ENCFF437YML/@@download/ENCFF437YML.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF562FHO bigWig fold change over control ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF736DHC 782779813 ENCODE Processing Pipeline 737d1659536d414cc8791019680c976f https://www.encodeproject.org/files/ENCFF562FHO/@@download/ENCFF562FHO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF488SDP bigWig fold change over control ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF927VOZ 445158097 ENCODE Processing Pipeline 54187d6a5198d04ca5175a5a7c867dfb https://www.encodeproject.org/files/ENCFF488SDP/@@download/ENCFF488SDP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF366KTI bigWig fold change over control ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF736DHC, ENCFF927VOZ 984261021 ENCODE Processing Pipeline 9e2b38db41da6337cb036ddd84c2e8b1 https://www.encodeproject.org/files/ENCFF366KTI/@@download/ENCFF366KTI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF185FGI bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF736DHC 6921034 ENCODE Processing Pipeline 3d395e693613e0bd2ae31191930dea99 https://www.encodeproject.org/files/ENCFF185FGI/@@download/ENCFF185FGI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF157LPX bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF927VOZ 5944305 ENCODE Processing Pipeline ad51ce3ee734670c8fc409a0782304a1 https://www.encodeproject.org/files/ENCFF157LPX/@@download/ENCFF157LPX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF300BOQ bigBed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF185FGI 12775153 ENCODE Processing Pipeline 192e98db3e30f1318f028c1007f4f278 https://www.encodeproject.org/files/ENCFF300BOQ/@@download/ENCFF300BOQ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF735NEK bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF736DHC, ENCFF927VOZ 6957933 ENCODE Processing Pipeline a97c4a4c9dc14b4bd85ad4dc4d59da31 https://www.encodeproject.org/files/ENCFF735NEK/@@download/ENCFF735NEK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF421HAZ bigBed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF157LPX 13099733 ENCODE Processing Pipeline 315ca43bb88db685a09c7287a7af60ab https://www.encodeproject.org/files/ENCFF421HAZ/@@download/ENCFF421HAZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF335XLJ bigBed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF735NEK 12923054 ENCODE Processing Pipeline 2bca733a68e1905cb236feb0f296fda3 https://www.encodeproject.org/files/ENCFF335XLJ/@@download/ENCFF335XLJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF303TLQ bed narrowPeak conservative idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF157LPX, ENCFF185FGI, ENCFF419RSJ, ENCFF735NEK 266870 ENCODE Processing Pipeline 3669b793f51ae40e0fb8fc7000f51b6d https://www.encodeproject.org/files/ENCFF303TLQ/@@download/ENCFF303TLQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028TVD bigBed narrowPeak conservative idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF303TLQ 554261 ENCODE Processing Pipeline d6da1ae6fc7748442d93a60cd682b64a https://www.encodeproject.org/files/ENCFF028TVD/@@download/ENCFF028TVD.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099RTI bigBed narrowPeak optimal idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF390RLO 638928 ENCODE Processing Pipeline e80fc7db1c9beb7f1098c75d126d9ef6 https://www.encodeproject.org/files/ENCFF099RTI/@@download/ENCFF099RTI.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF390RLO bed narrowPeak optimal idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF157LPX, ENCFF185FGI, ENCFF419RSJ, ENCFF735NEK 320425 ENCODE Processing Pipeline 0732a96d5e66e474253fd92e3ee4392d https://www.encodeproject.org/files/ENCFF390RLO/@@download/ENCFF390RLO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF204XZS bigWig signal p-value ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF362WTD 1262550140 ENCODE Processing Pipeline 8efc6140fd12a5379a1d65910798fd48 https://www.encodeproject.org/files/ENCFF204XZS/@@download/ENCFF204XZS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF602PNO bigWig signal p-value ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF571MOX 1148568103 ENCODE Processing Pipeline b5138219e42234d22330eb795232f51b https://www.encodeproject.org/files/ENCFF602PNO/@@download/ENCFF602PNO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF931INX bigWig signal p-value ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF362WTD, ENCFF571MOX 1616727385 ENCODE Processing Pipeline 83583c9987671de3f4b01908812f1b2c https://www.encodeproject.org/files/ENCFF931INX/@@download/ENCFF931INX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961TWQ bigWig fold change over control ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF362WTD 1366302889 ENCODE Processing Pipeline 39ea587f80d4f5ae414d9589916d6bc7 https://www.encodeproject.org/files/ENCFF961TWQ/@@download/ENCFF961TWQ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF059TLA bigWig fold change over control ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF571MOX 897683112 ENCODE Processing Pipeline d342fd88f34fdcdc87812bcf0758491e https://www.encodeproject.org/files/ENCFF059TLA/@@download/ENCFF059TLA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF136GRX bigWig fold change over control ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF362WTD, ENCFF571MOX 1590975061 ENCODE Processing Pipeline 9e59198dd8e59c773835f519df77a5c4 https://www.encodeproject.org/files/ENCFF136GRX/@@download/ENCFF136GRX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970JZW bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF362WTD 7148166 ENCODE Processing Pipeline 9ce482f96aa7db6959fd7a521c5f66de https://www.encodeproject.org/files/ENCFF970JZW/@@download/ENCFF970JZW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF863YSM bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF571MOX 6639422 ENCODE Processing Pipeline 164b51b4fd7027921f8ba66bff29db06 https://www.encodeproject.org/files/ENCFF863YSM/@@download/ENCFF863YSM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF160RBP bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF362WTD, ENCFF571MOX 7138359 ENCODE Processing Pipeline cdaf219ac2d558678b1572719a588c9c https://www.encodeproject.org/files/ENCFF160RBP/@@download/ENCFF160RBP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF815WVV bigBed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF970JZW 12841358 ENCODE Processing Pipeline 87aabbc92e7b60c7921a8114232c3600 https://www.encodeproject.org/files/ENCFF815WVV/@@download/ENCFF815WVV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF774LYH bigBed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF863YSM 13018826 ENCODE Processing Pipeline a5de5c12b666ef418c767fe0d4e2e077 https://www.encodeproject.org/files/ENCFF774LYH/@@download/ENCFF774LYH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851LOD bigBed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF160RBP 12897850 ENCODE Processing Pipeline 42f2e0afb1d66abec0da032ee79a6d07 https://www.encodeproject.org/files/ENCFF851LOD/@@download/ENCFF851LOD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463UQF bed narrowPeak conservative idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF160RBP, ENCFF863YSM, ENCFF970JZW 280774 ENCODE Processing Pipeline 89e4764b29b9c9cea9695795dc98eeb4 https://www.encodeproject.org/files/ENCFF463UQF/@@download/ENCFF463UQF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF008FVU bigBed narrowPeak conservative idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF463UQF 597245 ENCODE Processing Pipeline 0b3ed35d7f38fb1936c2ec67e9f7be0f https://www.encodeproject.org/files/ENCFF008FVU/@@download/ENCFF008FVU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF039GWV bed narrowPeak optimal idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF160RBP, ENCFF863YSM, ENCFF970JZW 301938 ENCODE Processing Pipeline 49619a3d351683415190c2ba07e05d2a https://www.encodeproject.org/files/ENCFF039GWV/@@download/ENCFF039GWV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF293LVR bigBed narrowPeak optimal idr thresholded peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF039GWV 630437 ENCODE Processing Pipeline 7000be43aff59e47d133952e828ab905 https://www.encodeproject.org/files/ENCFF293LVR/@@download/ENCFF293LVR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000NGL bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NGY 1755232014 Richard Myers, HAIB 2bc2325ace585bf0fc51937830a62585 https://www.encodeproject.org/files/ENCFF000NGL/@@download/ENCFF000NGL.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NGO bigBed broadPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TTL 400778 Richard Myers, HAIB cb1b701dfcff6c2c1770b5a2c1321836 https://www.encodeproject.org/files/ENCFF000NGO/@@download/ENCFF000NGO.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NGP bigBed broadPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TTM 326794 Richard Myers, HAIB b87d4c76e7a51d5bb115c68c2a7f80a2 https://www.encodeproject.org/files/ENCFF000NGP/@@download/ENCFF000NGP.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NGQ bigWig raw signal ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 25451942 Richard Myers, HAIB 22b216ec7ae0f7856550843a10295c9e https://www.encodeproject.org/files/ENCFF000NGQ/@@download/ENCFF000NGQ.bigWig hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF000NGR bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NHA 1730088651 Richard Myers, HAIB 643c04fc62e94fd4c7126727c35b336b https://www.encodeproject.org/files/ENCFF000NGR/@@download/ENCFF000NGR.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NGS bigWig raw signal ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 20656077 Richard Myers, HAIB 98c9abe0e812b0f48171644c7d691926 https://www.encodeproject.org/files/ENCFF000NGS/@@download/ENCFF000NGS.bigWig hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF000NGY fastq reads ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1731165739 Richard Myers, HAIB 6d0fa75898c9d74ba47c69c38d550d64 https://www.encodeproject.org/files/ENCFF000NGY/@@download/ENCFF000NGY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF000NHA fastq reads ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1649362925 Richard Myers, HAIB 3f9c45cc64929e4e6d4b42f26389fb1b https://www.encodeproject.org/files/ENCFF000NHA/@@download/ENCFF000NHA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF001TTL bed broadPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 229516 Richard Myers, HAIB 9f4b6a3c7f73a81173ef79e41ea4b568 https://www.encodeproject.org/files/ENCFF001TTL/@@download/ENCFF001TTL.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF001TTM bed broadPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 170263 Richard Myers, HAIB 02f4de8a6d2ae2da5b1f2e387bdfee09 https://www.encodeproject.org/files/ENCFF001TTM/@@download/ENCFF001TTM.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF002CFY bed narrowPeak optimal idr thresholded peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 150969 ENCODE Consortium Analysis Working Group 387239066cdb309b4f457cffb9b69b14 https://www.encodeproject.org/files/ENCFF002CFY/@@download/ENCFF002CFY.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF193BOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFY 450578 ENCODE Consortium 7550ceaca4a77ad4ae557fff4890a83a https://www.encodeproject.org/files/ENCFF193BOZ/@@download/ENCFF193BOZ.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF327YBD bam unfiltered alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NGY, ENCFF643CGH 1911529955 ENCODE Processing Pipeline be41ebf6bf9eee090dfad80e9ee9b375 https://www.encodeproject.org/files/ENCFF327YBD/@@download/ENCFF327YBD.bam GRCh38 released low read length biological replicates with identical biosample ENCFF681HSI bam unfiltered alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHA, ENCFF643CGH 1851019740 ENCODE Processing Pipeline b926759055e4831848df31108f6339c5 https://www.encodeproject.org/files/ENCFF681HSI/@@download/ENCFF681HSI.bam GRCh38 released low read length biological replicates with identical biosample ENCFF973KMA bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NGY, ENCFF643CGH 1240183484 ENCODE Processing Pipeline f6bb141598b09b73ef3cca4ad3110dc6 https://www.encodeproject.org/files/ENCFF973KMA/@@download/ENCFF973KMA.bam GRCh38 released low read length biological replicates with identical biosample ENCFF805LGC bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHA, ENCFF643CGH 1235513477 ENCODE Processing Pipeline ab1e209a858d53e7c84e75ab4ff898e4 https://www.encodeproject.org/files/ENCFF805LGC/@@download/ENCFF805LGC.bam GRCh38 released low read length biological replicates with identical biosample ENCFF992XTA bam unfiltered alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NGY, ENCFF807MUK 1906357926 ENCODE Processing Pipeline 0609e97c6cfa9135abde92d238091331 https://www.encodeproject.org/files/ENCFF992XTA/@@download/ENCFF992XTA.bam hg19 released low read length biological replicates with identical biosample ENCFF150BKA bam unfiltered alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHA, ENCFF807MUK 1845720245 ENCODE Processing Pipeline 98efb4e66811758fa9617dec85ee0e64 https://www.encodeproject.org/files/ENCFF150BKA/@@download/ENCFF150BKA.bam hg19 released low read length biological replicates with identical biosample ENCFF154LYO bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHA, ENCFF807MUK 1235590110 ENCODE Processing Pipeline 25b54dbfaa0866ba87262e2a2fcc8b06 https://www.encodeproject.org/files/ENCFF154LYO/@@download/ENCFF154LYO.bam hg19 released low read length biological replicates with identical biosample ENCFF981DLK bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NGY, ENCFF807MUK 1240248190 ENCODE Processing Pipeline bed5a02021da09334b93b7845197bca8 https://www.encodeproject.org/files/ENCFF981DLK/@@download/ENCFF981DLK.bam hg19 released low read length biological replicates with identical biosample ENCFF875FMR bigWig signal p-value ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF973KMA 633142795 ENCODE Processing Pipeline 9d429b60f5feb1b1f258731dbf2533db https://www.encodeproject.org/files/ENCFF875FMR/@@download/ENCFF875FMR.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF339RLO bigWig signal p-value ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF805LGC 788409303 ENCODE Processing Pipeline 802e8758910f2c5fcb84b4a4d8c00628 https://www.encodeproject.org/files/ENCFF339RLO/@@download/ENCFF339RLO.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF610HSM bigWig signal p-value ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF656HEF, ENCFF805LGC, ENCFF973KMA 804209153 ENCODE Processing Pipeline 45bae784722243e12cf624ed7bbbbee0 https://www.encodeproject.org/files/ENCFF610HSM/@@download/ENCFF610HSM.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF204URJ bigWig fold change over control ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF805LGC 605644050 ENCODE Processing Pipeline 2c8c9d1bd52a0d89ca0cc72445e3e1fc https://www.encodeproject.org/files/ENCFF204URJ/@@download/ENCFF204URJ.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF064JPH bigWig fold change over control ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF973KMA 611618691 ENCODE Processing Pipeline 8956ec75045946ea17d0e3bfdb4a1701 https://www.encodeproject.org/files/ENCFF064JPH/@@download/ENCFF064JPH.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF369URM bigWig fold change over control ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF656HEF, ENCFF805LGC, ENCFF973KMA 1005557377 ENCODE Processing Pipeline 5b85f28296ba897d36b76c8897de3e91 https://www.encodeproject.org/files/ENCFF369URM/@@download/ENCFF369URM.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF004HEL bigBed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF896EXB 12735732 ENCODE Processing Pipeline d9796c6bddfc42e3287b136adf41101a https://www.encodeproject.org/files/ENCFF004HEL/@@download/ENCFF004HEL.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF092AGK bigBed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF191CUL 12675922 ENCODE Processing Pipeline 9d86fc3cfe59899d10ce3a59637a209d https://www.encodeproject.org/files/ENCFF092AGK/@@download/ENCFF092AGK.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF191CUL bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF973KMA 6911505 ENCODE Processing Pipeline 2e7db205a91229f50bdf8dda9b9735a6 https://www.encodeproject.org/files/ENCFF191CUL/@@download/ENCFF191CUL.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF241RGJ bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF656HEF, ENCFF805LGC, ENCFF973KMA 7166889 ENCODE Processing Pipeline 92091d400a2e1264e0d006bbb62c51be https://www.encodeproject.org/files/ENCFF241RGJ/@@download/ENCFF241RGJ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF896EXB bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF805LGC 6800782 ENCODE Processing Pipeline 6b224dbfc7e60b4f79433ff67f1d6044 https://www.encodeproject.org/files/ENCFF896EXB/@@download/ENCFF896EXB.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF708HTR bed narrowPeak optimal idr thresholded peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF191CUL, ENCFF241RGJ, ENCFF419RSJ, ENCFF896EXB 209969 ENCODE Processing Pipeline ae44d9e1ec3736eb9ffa0fef9b6abba9 https://www.encodeproject.org/files/ENCFF708HTR/@@download/ENCFF708HTR.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF929RKV bigBed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF241RGJ 12525945 ENCODE Processing Pipeline fae24e0b38e2ee2775644e742464aa5d https://www.encodeproject.org/files/ENCFF929RKV/@@download/ENCFF929RKV.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF825JPM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF708HTR 452175 ENCODE Processing Pipeline 6252a017fbac6406d586d90a8ed9fcb8 https://www.encodeproject.org/files/ENCFF825JPM/@@download/ENCFF825JPM.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF611UQN bigWig fold change over control ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF981DLK 608971449 ENCODE Processing Pipeline 51843075c9a24d0478d1b915c3d37c92 https://www.encodeproject.org/files/ENCFF611UQN/@@download/ENCFF611UQN.bigWig hg19 released low read length biological replicates with identical biosample ENCFF925WSP bigWig signal p-value ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF981DLK 669083645 ENCODE Processing Pipeline d9a2614e4f41c406002f91a13236c23e https://www.encodeproject.org/files/ENCFF925WSP/@@download/ENCFF925WSP.bigWig hg19 released low read length biological replicates with identical biosample ENCFF486QSF bigWig signal p-value ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF154LYO, ENCFF864UEQ 673505318 ENCODE Processing Pipeline 960aa27d84c447953c1c7f6228b5e88d https://www.encodeproject.org/files/ENCFF486QSF/@@download/ENCFF486QSF.bigWig hg19 released low read length biological replicates with identical biosample ENCFF522RIA bed narrowPeak optimal idr thresholded peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF280FDD, ENCFF362KLR, ENCFF968NOA 208546 ENCODE Processing Pipeline 21e6371ef6a2a2ac1fdecc017bbcb743 https://www.encodeproject.org/files/ENCFF522RIA/@@download/ENCFF522RIA.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF327AHM bigBed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF362KLR 12654484 ENCODE Processing Pipeline d5f47b6868f0638ea58f1ad07d36460e https://www.encodeproject.org/files/ENCFF327AHM/@@download/ENCFF327AHM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF620FRR bigWig signal p-value ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF154LYO, ENCFF864UEQ, ENCFF981DLK 804291843 ENCODE Processing Pipeline a7305b56ccffdd7afcf7d1c1248185b0 https://www.encodeproject.org/files/ENCFF620FRR/@@download/ENCFF620FRR.bigWig hg19 released low read length biological replicates with identical biosample ENCFF968NOA bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF154LYO, ENCFF864UEQ 6825188 ENCODE Processing Pipeline 3c4bb896361c74cab3300f5c5fe8335c https://www.encodeproject.org/files/ENCFF968NOA/@@download/ENCFF968NOA.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF069WDW bigWig fold change over control ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF154LYO, ENCFF864UEQ 634084178 ENCODE Processing Pipeline d6897f2a9d3f9703efa85fe2132862be https://www.encodeproject.org/files/ENCFF069WDW/@@download/ENCFF069WDW.bigWig hg19 released low read length biological replicates with identical biosample ENCFF362KLR bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF981DLK 6907847 ENCODE Processing Pipeline eb4331f32f8a8c80502f4899bd27ce0a https://www.encodeproject.org/files/ENCFF362KLR/@@download/ENCFF362KLR.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF668XUU bigBed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF968NOA 12739975 ENCODE Processing Pipeline 068b5492673770fe892eb3451b1a3503 https://www.encodeproject.org/files/ENCFF668XUU/@@download/ENCFF668XUU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF060XTU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF522RIA 448758 ENCODE Processing Pipeline bbba99341383d73a4c0d503da618874f https://www.encodeproject.org/files/ENCFF060XTU/@@download/ENCFF060XTU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF762IJZ bigWig fold change over control ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF154LYO, ENCFF864UEQ, ENCFF981DLK 1006051559 ENCODE Processing Pipeline 90f37841104c94de4d5bb747d9bdb86b https://www.encodeproject.org/files/ENCFF762IJZ/@@download/ENCFF762IJZ.bigWig hg19 released low read length biological replicates with identical biosample ENCFF040LBM bigBed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF280FDD 12516253 ENCODE Processing Pipeline a9ba77c09bd21736045b865776e6aacb https://www.encodeproject.org/files/ENCFF040LBM/@@download/ENCFF040LBM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF280FDD bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF154LYO, ENCFF864UEQ, ENCFF981DLK 7169728 ENCODE Processing Pipeline 34bece6fc6d9af84de98dbc28021fb42 https://www.encodeproject.org/files/ENCFF280FDD/@@download/ENCFF280FDD.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF780IGT fastq reads ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF485RLD 2358819142 Michael Snyder, Stanford e13b85a5ef5ec809e54b889baf7105b7 SRA:SRR6213578 https://www.encodeproject.org/files/ENCFF780IGT/@@download/ENCFF780IGT.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF109KFS fastq reads ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF364NNY 2830938367 Michael Snyder, Stanford 17a3687f27d4b9e2c2b71fe350faa1a7 SRA:SRR6213577 https://www.encodeproject.org/files/ENCFF109KFS/@@download/ENCFF109KFS.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF485RLD fastq reads ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF780IGT 2833681608 Michael Snyder, Stanford e48828442435f8c5d390f8ce6ad02d3b SRA:SRR6213578 https://www.encodeproject.org/files/ENCFF485RLD/@@download/ENCFF485RLD.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF364NNY fastq reads ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF109KFS 3355208485 Michael Snyder, Stanford 5c1950c7859f881d2368563c5219c7fe SRA:SRR6213577 https://www.encodeproject.org/files/ENCFF364NNY/@@download/ENCFF364NNY.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF144KRW bam unfiltered alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF485RLD, ENCFF643CGH, ENCFF780IGT 5257816862 ENCODE Processing Pipeline d0b412d32df78fcb8c0c8a68a6045cdf https://www.encodeproject.org/files/ENCFF144KRW/@@download/ENCFF144KRW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF559UPW bam unfiltered alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF109KFS, ENCFF364NNY, ENCFF807MUK 6088379022 ENCODE Processing Pipeline 6eadb458960b761fac86e7a15f59818e https://www.encodeproject.org/files/ENCFF559UPW/@@download/ENCFF559UPW.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF894PYA bam unfiltered alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF485RLD, ENCFF780IGT, ENCFF807MUK 5247836426 ENCODE Processing Pipeline 8aad8db91eff9c49e47670366e966055 https://www.encodeproject.org/files/ENCFF894PYA/@@download/ENCFF894PYA.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF222NIK bam unfiltered alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF109KFS, ENCFF364NNY, ENCFF643CGH 6099338996 ENCODE Processing Pipeline 3f1b10acd36ae75e326e5f58363b2c42 https://www.encodeproject.org/files/ENCFF222NIK/@@download/ENCFF222NIK.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF764ABD bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF485RLD, ENCFF780IGT, ENCFF807MUK 4225673524 ENCODE Processing Pipeline e6b94980f1d46ff6a2c3a73127802751 https://www.encodeproject.org/files/ENCFF764ABD/@@download/ENCFF764ABD.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF014SDL bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF109KFS, ENCFF364NNY, ENCFF807MUK 4873438150 ENCODE Processing Pipeline f7402370c6616dc5699c563adb703f67 https://www.encodeproject.org/files/ENCFF014SDL/@@download/ENCFF014SDL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF858TGO bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF485RLD, ENCFF643CGH, ENCFF780IGT 4230258502 ENCODE Processing Pipeline 84bc2fb2591ae6ac64f8e55e6795f745 https://www.encodeproject.org/files/ENCFF858TGO/@@download/ENCFF858TGO.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF250JTL bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF109KFS, ENCFF364NNY, ENCFF643CGH 4878532785 ENCODE Processing Pipeline 616f029b1b30a4457da64521359c3242 https://www.encodeproject.org/files/ENCFF250JTL/@@download/ENCFF250JTL.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF918QZD bigWig signal p-value ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF250JTL, ENCFF810LLR, ENCFF858TGO 1954519490 ENCODE Processing Pipeline c8fe2d399b5c3a9735393672f4e6f2ad https://www.encodeproject.org/files/ENCFF918QZD/@@download/ENCFF918QZD.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF569DLD bigWig signal p-value ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF014SDL, ENCFF182WHU 1482044491 ENCODE Processing Pipeline a46caaf305c93cbffd1acb8bcbf14428 https://www.encodeproject.org/files/ENCFF569DLD/@@download/ENCFF569DLD.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF447CEV bigWig signal p-value ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF858TGO 1517732333 ENCODE Processing Pipeline 1a4939ee9326676c973e836e2f7803d2 https://www.encodeproject.org/files/ENCFF447CEV/@@download/ENCFF447CEV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF811JFQ bigWig fold change over control ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF250JTL, ENCFF810LLR 1706024682 ENCODE Processing Pipeline 156505edef9dcecad99c212f93639b13 https://www.encodeproject.org/files/ENCFF811JFQ/@@download/ENCFF811JFQ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF166GOX bigWig signal p-value ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF014SDL, ENCFF182WHU, ENCFF764ABD 1922399536 ENCODE Processing Pipeline 946de8ec18c9483b18e1262e7ba8f9c1 https://www.encodeproject.org/files/ENCFF166GOX/@@download/ENCFF166GOX.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF118UPA bigWig signal p-value ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF250JTL, ENCFF810LLR 1537037098 ENCODE Processing Pipeline 65fb7277b6ad97757c3cf0430b231d32 https://www.encodeproject.org/files/ENCFF118UPA/@@download/ENCFF118UPA.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF743YMQ bigWig signal p-value ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764ABD 1518968460 ENCODE Processing Pipeline 2f8113f2635d64ffe8ea7689fee66123 https://www.encodeproject.org/files/ENCFF743YMQ/@@download/ENCFF743YMQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF441EFD bigWig fold change over control ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764ABD 1548782822 ENCODE Processing Pipeline 7619b1949377486f4e0779107b30659a https://www.encodeproject.org/files/ENCFF441EFD/@@download/ENCFF441EFD.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF208UMG bigWig fold change over control ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF858TGO 1561543769 ENCODE Processing Pipeline 41570626e589aa6e456a2efa078594b4 https://www.encodeproject.org/files/ENCFF208UMG/@@download/ENCFF208UMG.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF930EWX bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF858TGO 6614658 ENCODE Processing Pipeline ab62f64b7607df8a9b924d5870ce81a2 https://www.encodeproject.org/files/ENCFF930EWX/@@download/ENCFF930EWX.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF844JCE bigWig fold change over control ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF250JTL, ENCFF810LLR, ENCFF858TGO 2235562675 ENCODE Processing Pipeline 57bbfa6040fba1739cf19eff686d98c1 https://www.encodeproject.org/files/ENCFF844JCE/@@download/ENCFF844JCE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF366SYY bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF250JTL, ENCFF810LLR 6652938 ENCODE Processing Pipeline 78ab97ca6b11829ebcf4de26d2334c40 https://www.encodeproject.org/files/ENCFF366SYY/@@download/ENCFF366SYY.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF795PXX bigBed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF930EWX 11123762 ENCODE Processing Pipeline a127758762966fc6491904fa86233b84 https://www.encodeproject.org/files/ENCFF795PXX/@@download/ENCFF795PXX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF823WZI bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF014SDL, ENCFF182WHU 6646832 ENCODE Processing Pipeline 10dfae0e7ab320b6dbc219fc9bf80104 https://www.encodeproject.org/files/ENCFF823WZI/@@download/ENCFF823WZI.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF744MKE bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF250JTL, ENCFF810LLR, ENCFF858TGO 7285705 ENCODE Processing Pipeline 8530f894ab222647c79a87044155ac93 https://www.encodeproject.org/files/ENCFF744MKE/@@download/ENCFF744MKE.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF091HDA bigWig fold change over control ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF014SDL, ENCFF182WHU 1703744168 ENCODE Processing Pipeline 1a40588bf37becc798deba96f36b237e https://www.encodeproject.org/files/ENCFF091HDA/@@download/ENCFF091HDA.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF537NOG bigWig fold change over control ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF014SDL, ENCFF182WHU, ENCFF764ABD 2202693361 ENCODE Processing Pipeline 60526c6c8452899c1f215064bb4d8565 https://www.encodeproject.org/files/ENCFF537NOG/@@download/ENCFF537NOG.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF650KLM bigBed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF366SYY 11067968 ENCODE Processing Pipeline 7aa144652649b1b0ced9f9d4c07aa413 https://www.encodeproject.org/files/ENCFF650KLM/@@download/ENCFF650KLM.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF630OFA bigBed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF744MKE 11184452 ENCODE Processing Pipeline cd60bfa9676e8feeb3be6358d03fff82 https://www.encodeproject.org/files/ENCFF630OFA/@@download/ENCFF630OFA.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF435OLX bigBed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF089PWK 11109655 ENCODE Processing Pipeline f5329bf48be7721e074a2452846a5697 https://www.encodeproject.org/files/ENCFF435OLX/@@download/ENCFF435OLX.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF089PWK bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764ABD 6607416 ENCODE Processing Pipeline 257ed1da47c3d165e1c0f62b95885af9 https://www.encodeproject.org/files/ENCFF089PWK/@@download/ENCFF089PWK.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF996QGV bed narrowPeak optimal idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF366SYY, ENCFF419RSJ, ENCFF744MKE, ENCFF930EWX 33388 ENCODE Processing Pipeline 8b35964b2112e0a2264cc3133597e0a8 https://www.encodeproject.org/files/ENCFF996QGV/@@download/ENCFF996QGV.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF484OQM bed narrowPeak conservative idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF089PWK, ENCFF279UHE, ENCFF823WZI 19810 ENCODE Processing Pipeline 858b9f4ca5328ee56f6d0259165ce3d8 https://www.encodeproject.org/files/ENCFF484OQM/@@download/ENCFF484OQM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF483VWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF939GJQ 100085 ENCODE Processing Pipeline fb31137c8c754d32a4251add1f5b8d7f https://www.encodeproject.org/files/ENCFF483VWQ/@@download/ENCFF483VWQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF577IQY bigBed narrowPeak optimal idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF996QGV 123220 ENCODE Processing Pipeline dbda72a03bc27e8a155e1a4d2d455212 https://www.encodeproject.org/files/ENCFF577IQY/@@download/ENCFF577IQY.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF241RTY bigBed narrowPeak conservative idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF484OQM 82370 ENCODE Processing Pipeline 9bf41f0e9a0c3e60be79e9d564e1ba55 https://www.encodeproject.org/files/ENCFF241RTY/@@download/ENCFF241RTY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF939GJQ bed narrowPeak conservative idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF366SYY, ENCFF419RSJ, ENCFF744MKE, ENCFF930EWX 20867 ENCODE Processing Pipeline d10cf08f42b626c08f0926755ab74751 https://www.encodeproject.org/files/ENCFF939GJQ/@@download/ENCFF939GJQ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF142TEP bigBed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF279UHE 11168487 ENCODE Processing Pipeline a19091e6d8871b849bf2bbcf7944c239 https://www.encodeproject.org/files/ENCFF142TEP/@@download/ENCFF142TEP.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF279UHE bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF014SDL, ENCFF182WHU, ENCFF764ABD 7266053 ENCODE Processing Pipeline cef88e6b923220cc3f1e5b0c83a9fdfe https://www.encodeproject.org/files/ENCFF279UHE/@@download/ENCFF279UHE.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF073XKN bed narrowPeak optimal idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF089PWK, ENCFF279UHE, ENCFF823WZI 29916 ENCODE Processing Pipeline f751dada03d75e9a2879c2c244d551f5 https://www.encodeproject.org/files/ENCFF073XKN/@@download/ENCFF073XKN.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF663SYF bigBed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF823WZI 11047043 ENCODE Processing Pipeline 65701a7bbade0b9296da590f01a75d2d https://www.encodeproject.org/files/ENCFF663SYF/@@download/ENCFF663SYF.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF161TOX bigBed narrowPeak optimal idr thresholded peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF073XKN 114103 ENCODE Processing Pipeline bb01777539c76b8993df7ff656dfb28a https://www.encodeproject.org/files/ENCFF161TOX/@@download/ENCFF161TOX.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF410PMB fastq reads ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF830DDU 2208607089 Michael Snyder, Stanford 9f1e7267e17d7db91c61966866ce4847 SRA:SRR6213827 https://www.encodeproject.org/files/ENCFF410PMB/@@download/ENCFF410PMB.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF857UFP fastq reads ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF024CHD 2866014227 Michael Snyder, Stanford 6d5ad8ee8ce3daa408c64c9c19071e94 SRA:SRR6213826 https://www.encodeproject.org/files/ENCFF857UFP/@@download/ENCFF857UFP.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF024CHD fastq reads ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF857UFP 3440908591 Michael Snyder, Stanford 22e1e9680c504d4587de57afe7c04c1f SRA:SRR6213826 https://www.encodeproject.org/files/ENCFF024CHD/@@download/ENCFF024CHD.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF830DDU fastq reads ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF410PMB 2726527762 Michael Snyder, Stanford 5fc1dfe37fc7f1c8658893e44d75a91e SRA:SRR6213827 https://www.encodeproject.org/files/ENCFF830DDU/@@download/ENCFF830DDU.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF025CGS bam unfiltered alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF410PMB, ENCFF807MUK, ENCFF830DDU 5083103062 ENCODE Processing Pipeline 9aa1cd3cea18951010b61f10fa90af15 https://www.encodeproject.org/files/ENCFF025CGS/@@download/ENCFF025CGS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF507PCO bam unfiltered alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF024CHD, ENCFF807MUK, ENCFF857UFP 6242338283 ENCODE Processing Pipeline 4eabe57b7d87a800fca91df504badc47 https://www.encodeproject.org/files/ENCFF507PCO/@@download/ENCFF507PCO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF132FMN bam unfiltered alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF024CHD, ENCFF643CGH, ENCFF857UFP 6253770318 ENCODE Processing Pipeline af5fbeaaecc1f134ac94f5e5a2607e2b https://www.encodeproject.org/files/ENCFF132FMN/@@download/ENCFF132FMN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF746REA bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF410PMB, ENCFF643CGH, ENCFF830DDU 4103187236 ENCODE Processing Pipeline c8e1be321a0f9f202f410b62f926ef0f https://www.encodeproject.org/files/ENCFF746REA/@@download/ENCFF746REA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF871ASE bam unfiltered alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF410PMB, ENCFF643CGH, ENCFF830DDU 5093870416 ENCODE Processing Pipeline b489758c2d8e21285d52bcd897a00926 https://www.encodeproject.org/files/ENCFF871ASE/@@download/ENCFF871ASE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF904OQO bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF410PMB, ENCFF807MUK, ENCFF830DDU 4099943834 ENCODE Processing Pipeline 45bc441a580c5de53e2fd12d40639f25 https://www.encodeproject.org/files/ENCFF904OQO/@@download/ENCFF904OQO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF698TEA bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF024CHD, ENCFF807MUK, ENCFF857UFP 5067568669 ENCODE Processing Pipeline dae3c4beda161af50c8f9fa121bf7d09 https://www.encodeproject.org/files/ENCFF698TEA/@@download/ENCFF698TEA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF540WIL bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF024CHD, ENCFF643CGH, ENCFF857UFP 5071417688 ENCODE Processing Pipeline 81d121de24041e86499b687c1287f4a3 https://www.encodeproject.org/files/ENCFF540WIL/@@download/ENCFF540WIL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF021YLM bigWig signal p-value ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF746REA, ENCFF810LLR 1584282179 ENCODE Processing Pipeline 24bf92ce1e46232f204a697a506523f1 https://www.encodeproject.org/files/ENCFF021YLM/@@download/ENCFF021YLM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF347PBW bigWig signal p-value ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF698TEA, ENCFF904OQO 1960677562 ENCODE Processing Pipeline ed54d5df7b4badf2f98c67f34b8e24df https://www.encodeproject.org/files/ENCFF347PBW/@@download/ENCFF347PBW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF521IVX bigWig fold change over control ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF904OQO 1523284837 ENCODE Processing Pipeline db3fd29d86328ee966309978e6e21cf6 https://www.encodeproject.org/files/ENCFF521IVX/@@download/ENCFF521IVX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF629LPG bigWig fold change over control ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF698TEA 1693452572 ENCODE Processing Pipeline 0221f6dc5ca710bdd79e2ca988f32b08 https://www.encodeproject.org/files/ENCFF629LPG/@@download/ENCFF629LPG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF874FZD bigWig signal p-value ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF904OQO 1477948406 ENCODE Processing Pipeline 5a1154e4f0a40e35c3ad19e798541a2a https://www.encodeproject.org/files/ENCFF874FZD/@@download/ENCFF874FZD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF306KOE bigWig signal p-value ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF540WIL, ENCFF746REA, ENCFF810LLR 1924678495 ENCODE Processing Pipeline b06cedb8a0bf1e3c8babff75e4e565de https://www.encodeproject.org/files/ENCFF306KOE/@@download/ENCFF306KOE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF044PVH bigWig signal p-value ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF698TEA 1422624531 ENCODE Processing Pipeline 9f757fa7257a7edf8d0b3b49eef91d20 https://www.encodeproject.org/files/ENCFF044PVH/@@download/ENCFF044PVH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF169QYU bigWig signal p-value ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF540WIL, ENCFF810LLR 1471693838 ENCODE Processing Pipeline 32a23b9bc7605389d6a7526a541333b2 https://www.encodeproject.org/files/ENCFF169QYU/@@download/ENCFF169QYU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF046NNQ bigWig fold change over control ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF746REA, ENCFF810LLR 1519059911 ENCODE Processing Pipeline 515a75505dfb0ba9ddce84c1a9182b85 https://www.encodeproject.org/files/ENCFF046NNQ/@@download/ENCFF046NNQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF760LFX bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF904OQO 6488825 ENCODE Processing Pipeline 9672542df683c206f1531b6923cf910c https://www.encodeproject.org/files/ENCFF760LFX/@@download/ENCFF760LFX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF467VSE bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF698TEA 6687741 ENCODE Processing Pipeline 30fcb7f75e1bee1b642ce85d33d815d1 https://www.encodeproject.org/files/ENCFF467VSE/@@download/ENCFF467VSE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF443HYD bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF540WIL, ENCFF746REA, ENCFF810LLR 7276138 ENCODE Processing Pipeline 006172af68395c1bf5d501734e01a602 https://www.encodeproject.org/files/ENCFF443HYD/@@download/ENCFF443HYD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF516DQR bigWig fold change over control ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF540WIL, ENCFF810LLR 1695745961 ENCODE Processing Pipeline c38fc9c5cf0499f2b52457c0bb118334 https://www.encodeproject.org/files/ENCFF516DQR/@@download/ENCFF516DQR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF911MEH bigWig fold change over control ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF540WIL, ENCFF746REA, ENCFF810LLR 2192916865 ENCODE Processing Pipeline fae518c8ebf7f0df613a7642e046164d https://www.encodeproject.org/files/ENCFF911MEH/@@download/ENCFF911MEH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF579BHQ bigWig fold change over control ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF698TEA, ENCFF904OQO 2235801531 ENCODE Processing Pipeline 8946f23f24c51ca2b4f431c077412050 https://www.encodeproject.org/files/ENCFF579BHQ/@@download/ENCFF579BHQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF802ALY bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF746REA, ENCFF810LLR 6493099 ENCODE Processing Pipeline e43e708d6765f1d37ead09a2dbab23fc https://www.encodeproject.org/files/ENCFF802ALY/@@download/ENCFF802ALY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF067MFF bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF698TEA, ENCFF904OQO 7267670 ENCODE Processing Pipeline 38de13e632294b57d6c4f71aa980367e https://www.encodeproject.org/files/ENCFF067MFF/@@download/ENCFF067MFF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF151OZM bigBed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF467VSE 10985152 ENCODE Processing Pipeline e7b0aa6f1678eddb3fe49a87875de66c https://www.encodeproject.org/files/ENCFF151OZM/@@download/ENCFF151OZM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF157GRK bigBed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF443HYD 11195270 ENCODE Processing Pipeline 27a7728dc6f63022da27d01fa4de6ecf https://www.encodeproject.org/files/ENCFF157GRK/@@download/ENCFF157GRK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF581ZAY bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF540WIL, ENCFF810LLR 6692483 ENCODE Processing Pipeline 8a0de9b54544d51df75e5cbdd816a553 https://www.encodeproject.org/files/ENCFF581ZAY/@@download/ENCFF581ZAY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF501HGB bigBed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF802ALY 11150866 ENCODE Processing Pipeline 7fe5c54d0c207da31b9f972b7c89cfc4 https://www.encodeproject.org/files/ENCFF501HGB/@@download/ENCFF501HGB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF343EOG bigBed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF067MFF 11176011 ENCODE Processing Pipeline 5478612a4f8837a65fd13220c15e52c1 https://www.encodeproject.org/files/ENCFF343EOG/@@download/ENCFF343EOG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF605JOI bigBed narrowPeak conservative idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF992MDD 87965 ENCODE Processing Pipeline 60f0572452d1473375c93f1c359857fc https://www.encodeproject.org/files/ENCFF605JOI/@@download/ENCFF605JOI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF464MAI bed narrowPeak optimal idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF067MFF, ENCFF467VSE, ENCFF760LFX 35224 ENCODE Processing Pipeline e67346113547e01be31a7f6901c4187a https://www.encodeproject.org/files/ENCFF464MAI/@@download/ENCFF464MAI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF102MZX bigBed narrowPeak optimal idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF464MAI 108168 ENCODE Processing Pipeline 71394714d84ff0c5a87a4d449ab4988d https://www.encodeproject.org/files/ENCFF102MZX/@@download/ENCFF102MZX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF473ORA bigBed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF760LFX 11132649 ENCODE Processing Pipeline 43dc8b985cb292eeaacd4bae91ac6bd2 https://www.encodeproject.org/files/ENCFF473ORA/@@download/ENCFF473ORA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF225CCA bigBed narrowPeak conservative idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF515NKO 91546 ENCODE Processing Pipeline 7675fa06de73fc634d48d245ccd9480e https://www.encodeproject.org/files/ENCFF225CCA/@@download/ENCFF225CCA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF163LEL bed narrowPeak optimal idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF443HYD, ENCFF581ZAY, ENCFF802ALY 35469 ENCODE Processing Pipeline 78bc60c9578c812cb320a0a2fbf9bb50 https://www.encodeproject.org/files/ENCFF163LEL/@@download/ENCFF163LEL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF667FJP bigBed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF581ZAY 11003208 ENCODE Processing Pipeline 49659fa38e0c63c5186aa495de22e9d9 https://www.encodeproject.org/files/ENCFF667FJP/@@download/ENCFF667FJP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF515NKO bed narrowPeak conservative idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF443HYD, ENCFF581ZAY, ENCFF802ALY 22481 ENCODE Processing Pipeline 4cb32bfb53112db3f981db0cc67bad6f https://www.encodeproject.org/files/ENCFF515NKO/@@download/ENCFF515NKO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF992MDD bed narrowPeak conservative idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF067MFF, ENCFF467VSE, ENCFF760LFX 21752 ENCODE Processing Pipeline 69803b5de9eb58ade6802da6f9b227a9 https://www.encodeproject.org/files/ENCFF992MDD/@@download/ENCFF992MDD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF797QTO bigBed narrowPeak optimal idr thresholded peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF163LEL 110848 ENCODE Processing Pipeline d3e9638fbc32e9a282430de39cbaa2d5 https://www.encodeproject.org/files/ENCFF797QTO/@@download/ENCFF797QTO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF771RGQ fastq reads ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2021761567 Richard Myers, HAIB 4e566f12db57bd080d8dd44d9ddf4572 SRA:SRR5331281 https://www.encodeproject.org/files/ENCFF771RGQ/@@download/ENCFF771RGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF082XMQ fastq reads ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1672336259 Richard Myers, HAIB 18b66dd6133d1b8026c836163351e620 SRA:SRR5331282 https://www.encodeproject.org/files/ENCFF082XMQ/@@download/ENCFF082XMQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF838RHI bam unfiltered alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF771RGQ 2166491968 ENCODE Processing Pipeline d047a0df121a45d01b4c7ac6febc59b2 https://www.encodeproject.org/files/ENCFF838RHI/@@download/ENCFF838RHI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF138ZVN bam unfiltered alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 76 ENCFF082XMQ, ENCFF643CGH 1804260852 ENCODE Processing Pipeline e108131e0c49d187879ab2e816b973f4 https://www.encodeproject.org/files/ENCFF138ZVN/@@download/ENCFF138ZVN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321LZY bam unfiltered alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 76 ENCFF082XMQ, ENCFF807MUK 1799864878 ENCODE Processing Pipeline bffb4a258573aba2df2534072f7acd89 https://www.encodeproject.org/files/ENCFF321LZY/@@download/ENCFF321LZY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF356KHQ bam unfiltered alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 76 ENCFF771RGQ, ENCFF807MUK 2161175882 ENCODE Processing Pipeline 6b324abeff97763587bec87d48afe8c7 https://www.encodeproject.org/files/ENCFF356KHQ/@@download/ENCFF356KHQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF707MEF bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF771RGQ 1660287107 ENCODE Processing Pipeline 5075fdc0160ba111f4c38a4bf826e184 https://www.encodeproject.org/files/ENCFF707MEF/@@download/ENCFF707MEF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405FFP bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 76 ENCFF082XMQ, ENCFF643CGH 1395001508 ENCODE Processing Pipeline e7503c5d5c6f3b86e534fc6d5ff59213 https://www.encodeproject.org/files/ENCFF405FFP/@@download/ENCFF405FFP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF739MET bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 76 ENCFF082XMQ, ENCFF807MUK 1393941537 ENCODE Processing Pipeline bd8e7a5d4123fc0ac9bb08a744a592ca https://www.encodeproject.org/files/ENCFF739MET/@@download/ENCFF739MET.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF646JVE bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 76 ENCFF771RGQ, ENCFF807MUK 1659104091 ENCODE Processing Pipeline 42a5bde9c3a4866a69652fceef8aee04 https://www.encodeproject.org/files/ENCFF646JVE/@@download/ENCFF646JVE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF217XSJ bigWig signal p-value ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF707MEF 675484034 ENCODE Processing Pipeline e0bf6ef6d5006a630eb87b904bcb06c7 https://www.encodeproject.org/files/ENCFF217XSJ/@@download/ENCFF217XSJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF336VPJ bigWig signal p-value ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF405FFP, ENCFF707MEF 652374872 ENCODE Processing Pipeline 7eeee2c068afd6af55e93378f6312e7e https://www.encodeproject.org/files/ENCFF336VPJ/@@download/ENCFF336VPJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927USB bigWig signal p-value ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF405FFP 462114731 ENCODE Processing Pipeline 88f391d375fcb5ced64089c79a34f097 https://www.encodeproject.org/files/ENCFF927USB/@@download/ENCFF927USB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF792LMU bigWig fold change over control ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF707MEF 588185812 ENCODE Processing Pipeline ef3b8b059e0708783a457dc67910c722 https://www.encodeproject.org/files/ENCFF792LMU/@@download/ENCFF792LMU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF956XKB bigWig fold change over control ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF405FFP 481361950 ENCODE Processing Pipeline 6a6bcec7dea3253831aec84dda578d75 https://www.encodeproject.org/files/ENCFF956XKB/@@download/ENCFF956XKB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF127MNH bigWig fold change over control ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF405FFP, ENCFF707MEF 909145833 ENCODE Processing Pipeline cbaf9ce60ecd64c00abaee9194bcf1bf https://www.encodeproject.org/files/ENCFF127MNH/@@download/ENCFF127MNH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF566FRU bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF707MEF 5742365 ENCODE Processing Pipeline 030263a5676982c7c10a4f19585aaa79 https://www.encodeproject.org/files/ENCFF566FRU/@@download/ENCFF566FRU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF574WMJ bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF405FFP, ENCFF707MEF 6398493 ENCODE Processing Pipeline 43e8b31992c7958214202043cb8d1bad https://www.encodeproject.org/files/ENCFF574WMJ/@@download/ENCFF574WMJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF328UHH bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF405FFP 5399348 ENCODE Processing Pipeline 9f7cec5dd6cdc4e6a83cd7e46167465f https://www.encodeproject.org/files/ENCFF328UHH/@@download/ENCFF328UHH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF302FFR bigBed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF566FRU 13273719 ENCODE Processing Pipeline 23201f46cd364d77fdb0221d5382cb08 https://www.encodeproject.org/files/ENCFF302FFR/@@download/ENCFF302FFR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF844BHB bigBed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF328UHH 13276845 ENCODE Processing Pipeline ea759030d3d89c549e38eedca3cc59ad https://www.encodeproject.org/files/ENCFF844BHB/@@download/ENCFF844BHB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF163JRA bigBed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF574WMJ 13363835 ENCODE Processing Pipeline c7044c2e491f75fb3c4b2568ae5029bf https://www.encodeproject.org/files/ENCFF163JRA/@@download/ENCFF163JRA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF284NPD bed narrowPeak conservative idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF328UHH, ENCFF419RSJ, ENCFF566FRU, ENCFF574WMJ 272879 ENCODE Processing Pipeline e9e3096966b484a6e2efa564a09f6b8e https://www.encodeproject.org/files/ENCFF284NPD/@@download/ENCFF284NPD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF571OYS bigBed narrowPeak conservative idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF284NPD 497001 ENCODE Processing Pipeline 3a77d018c773e91bbef403ff6d8fe8a9 https://www.encodeproject.org/files/ENCFF571OYS/@@download/ENCFF571OYS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF232WMR bed narrowPeak optimal idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF328UHH, ENCFF419RSJ, ENCFF566FRU, ENCFF574WMJ 280586 ENCODE Processing Pipeline 92474e4326ce8decf57395bba18f1df3 https://www.encodeproject.org/files/ENCFF232WMR/@@download/ENCFF232WMR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF613URD bigBed narrowPeak optimal idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF232WMR 614717 ENCODE Processing Pipeline 14d0314fc912e941719073351eb88475 https://www.encodeproject.org/files/ENCFF613URD/@@download/ENCFF613URD.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469BXD bigWig signal p-value ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF646JVE 1282647774 ENCODE Processing Pipeline fedffc28fe6da759d0c14e969417a395 https://www.encodeproject.org/files/ENCFF469BXD/@@download/ENCFF469BXD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF250SOM bigWig signal p-value ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF739MET 1234261366 ENCODE Processing Pipeline 75fda41de8db7d2d2865b997d6319c81 https://www.encodeproject.org/files/ENCFF250SOM/@@download/ENCFF250SOM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF542RWV bigWig signal p-value ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF646JVE, ENCFF739MET 1612038508 ENCODE Processing Pipeline 886b5ca842d8d6dcf58e365b400f9afd https://www.encodeproject.org/files/ENCFF542RWV/@@download/ENCFF542RWV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF429TNC bigWig fold change over control ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF646JVE 1018854697 ENCODE Processing Pipeline e6f26cb7ba8dd80c296908a18bad98e5 https://www.encodeproject.org/files/ENCFF429TNC/@@download/ENCFF429TNC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF396SYX bigWig fold change over control ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF739MET 916875784 ENCODE Processing Pipeline ad77b7527857dce823367135eab3f1c9 https://www.encodeproject.org/files/ENCFF396SYX/@@download/ENCFF396SYX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF276RTX bigWig fold change over control ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF646JVE, ENCFF739MET 1457798956 ENCODE Processing Pipeline 3d696ae5151ecc27ad351ceba720b6d1 https://www.encodeproject.org/files/ENCFF276RTX/@@download/ENCFF276RTX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF409MWH bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF646JVE 6453966 ENCODE Processing Pipeline 6f7abd79e442de86cae2d5492382a014 https://www.encodeproject.org/files/ENCFF409MWH/@@download/ENCFF409MWH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF908VCH bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF739MET 6247113 ENCODE Processing Pipeline da189223a005217fb5c2881d257510e7 https://www.encodeproject.org/files/ENCFF908VCH/@@download/ENCFF908VCH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF048IUI bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF646JVE, ENCFF739MET 6890456 ENCODE Processing Pipeline c324baec9b747db23a9e69f83b647654 https://www.encodeproject.org/files/ENCFF048IUI/@@download/ENCFF048IUI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF301QLW bigBed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF908VCH 13431013 ENCODE Processing Pipeline a012b43a82d5255eb2fd25e6c7ca372a https://www.encodeproject.org/files/ENCFF301QLW/@@download/ENCFF301QLW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF145ZZQ bigBed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF409MWH 13357308 ENCODE Processing Pipeline 5cf91958c3749bde9bf9b50bfbb4c1f5 https://www.encodeproject.org/files/ENCFF145ZZQ/@@download/ENCFF145ZZQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681MLY bigBed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF048IUI 13298138 ENCODE Processing Pipeline dd1a541f16c69e37a3c4e45d7b4bd96a https://www.encodeproject.org/files/ENCFF681MLY/@@download/ENCFF681MLY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF097GQF bed narrowPeak conservative idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF048IUI, ENCFF409MWH, ENCFF908VCH 249444 ENCODE Processing Pipeline 76f3ba4b997008103d90a651be866d50 https://www.encodeproject.org/files/ENCFF097GQF/@@download/ENCFF097GQF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF883YNO bed narrowPeak optimal idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF048IUI, ENCFF409MWH, ENCFF908VCH 265326 ENCODE Processing Pipeline 45d570958ee37878e149aa6dfcd84504 https://www.encodeproject.org/files/ENCFF883YNO/@@download/ENCFF883YNO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF211AXQ bigBed narrowPeak conservative idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF097GQF 470957 ENCODE Processing Pipeline 5dcab0dd32eae0dd4ee5034cb2eeacda https://www.encodeproject.org/files/ENCFF211AXQ/@@download/ENCFF211AXQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF242PTN bigBed narrowPeak optimal idr thresholded peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF883YNO 492157 ENCODE Processing Pipeline 57230ce36294a02af98048c921562168 https://www.encodeproject.org/files/ENCFF242PTN/@@download/ENCFF242PTN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF882UZC fastq reads ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF706YJI 2577932887 Richard Myers, HAIB 9ff2e9cac8850ae91e213d54f32d6b13 SRA:SRR6214321 https://www.encodeproject.org/files/ENCFF882UZC/@@download/ENCFF882UZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF916VDS/ released antibody characterized with exemption missing control alignments ENCFF706YJI fastq reads ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF882UZC 2617011229 Richard Myers, HAIB 3d74da06a74f2b7b7b3a572e5deeb0be SRA:SRR6214321 https://www.encodeproject.org/files/ENCFF706YJI/@@download/ENCFF706YJI.fastq.gz Illumina HiSeq 2000 /files/ENCFF567TLA/ released antibody characterized with exemption missing control alignments ENCFF937OAI bam alignments ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF706YJI, ENCFF807MUK, ENCFF882UZC 4544269958 ENCODE Processing Pipeline 9197ada87ed44b6c10786a5381a380b9 https://www.encodeproject.org/files/ENCFF937OAI/@@download/ENCFF937OAI.bam hg19 released antibody characterized with exemption missing control alignments ENCFF304CZU bam unfiltered alignments ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF706YJI, ENCFF807MUK, ENCFF882UZC 6197127297 ENCODE Processing Pipeline f20197acde2d2dfe63842e1dacc98b24 https://www.encodeproject.org/files/ENCFF304CZU/@@download/ENCFF304CZU.bam hg19 released antibody characterized with exemption missing control alignments ENCFF924ETU bam unfiltered alignments ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF706YJI, ENCFF882UZC 6225435256 ENCODE Processing Pipeline 188e5cfec61f97e33dee411dccfcc7ab https://www.encodeproject.org/files/ENCFF924ETU/@@download/ENCFF924ETU.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF481BPS bam alignments ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF706YJI, ENCFF882UZC 4550227563 ENCODE Processing Pipeline 5680b25e095202b5695d1e400c84e598 https://www.encodeproject.org/files/ENCFF481BPS/@@download/ENCFF481BPS.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF090XFA bigWig signal p-value ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF481BPS 1502975133 ENCODE Processing Pipeline 9abb075bcb5413615ee431d17a845ba8 https://www.encodeproject.org/files/ENCFF090XFA/@@download/ENCFF090XFA.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF105NEW bigWig fold change over control ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF481BPS 1606501438 ENCODE Processing Pipeline 3cf4075fc23f6b4d4e0c23b66bd04f08 https://www.encodeproject.org/files/ENCFF105NEW/@@download/ENCFF105NEW.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF046YQM bed narrowPeak peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF481BPS 5636638 ENCODE Processing Pipeline 5299f5f37fcac148b8615e6b2900c67c https://www.encodeproject.org/files/ENCFF046YQM/@@download/ENCFF046YQM.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF077SCE bigBed narrowPeak peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF046YQM 11865909 ENCODE Processing Pipeline 403a8f0acde04961cb81933692b288da https://www.encodeproject.org/files/ENCFF077SCE/@@download/ENCFF077SCE.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF104UOC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF046YQM, ENCFF419RSJ 280 ENCODE Processing Pipeline 93e32e54a18b98753753cb57eef48d76 https://www.encodeproject.org/files/ENCFF104UOC/@@download/ENCFF104UOC.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF380FPX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF104UOC 14786 ENCODE Processing Pipeline 4a85367dfa15385a2a3b6ba804d18745 https://www.encodeproject.org/files/ENCFF380FPX/@@download/ENCFF380FPX.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF355ZJR bigWig signal p-value ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF937OAI 1266753172 ENCODE Processing Pipeline f127cf1692e3b9e83af536b7c48e6b2d https://www.encodeproject.org/files/ENCFF355ZJR/@@download/ENCFF355ZJR.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF200DLH bigWig fold change over control ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF937OAI 1574810913 ENCODE Processing Pipeline 32a61616dba6dc11d73808a394da35ba https://www.encodeproject.org/files/ENCFF200DLH/@@download/ENCFF200DLH.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF269GVM bigBed narrowPeak peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF905MOZ 11842230 ENCODE Processing Pipeline 3a27de5c1276cd904833a5e2d6adda84 https://www.encodeproject.org/files/ENCFF269GVM/@@download/ENCFF269GVM.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF963PEH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF905MOZ 276 ENCODE Processing Pipeline 99b33f18100e21999d32630ebb9bab1f https://www.encodeproject.org/files/ENCFF963PEH/@@download/ENCFF963PEH.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF546NVQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF963PEH 14644 ENCODE Processing Pipeline 7e80246a48d2aab8a79cf80262c78d5c https://www.encodeproject.org/files/ENCFF546NVQ/@@download/ENCFF546NVQ.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF905MOZ bed narrowPeak peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF937OAI 5633472 ENCODE Processing Pipeline 8edfc1301ca2e4594dc31ab7c8cebcdb https://www.encodeproject.org/files/ENCFF905MOZ/@@download/ENCFF905MOZ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF000BWB bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000BWM 617227989 Bradley Bernstein, Broad cb5a5fc42a0d976476272e7062e6ba19 https://www.encodeproject.org/files/ENCFF000BWB/@@download/ENCFF000BWB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF000BWC bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000BWR 454281342 Bradley Bernstein, Broad d611d261ac269a700cc6fc069af1ad6d https://www.encodeproject.org/files/ENCFF000BWC/@@download/ENCFF000BWC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF000BWD bigBed broadPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001SZB 2467007 Bradley Bernstein, Broad 97cf15678beb13bfb879a126f3091759 https://www.encodeproject.org/files/ENCFF000BWD/@@download/ENCFF000BWD.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF000BWF bigWig signal ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 352793452 Bradley Bernstein, Broad 48b7abb9bd3fa7935f0f9a5043bfb59e https://www.encodeproject.org/files/ENCFF000BWF/@@download/ENCFF000BWF.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient read depth ENCFF000BWM fastq reads ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 812284748 Bradley Bernstein, Broad ad037f197b2c3222ff43c5f0ba0f911d https://www.encodeproject.org/files/ENCFF000BWM/@@download/ENCFF000BWM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF000BWR fastq reads ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 51 single-ended 735849744 Bradley Bernstein, Broad 4a645fe6896b8520f1c4cc68c8255eda https://www.encodeproject.org/files/ENCFF000BWR/@@download/ENCFF000BWR.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000BWK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, inconsistent control read length, mixed read lengths insufficient read depth ENCFF001SZB bed broadPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1323565 Bradley Bernstein, Broad 905a8320cd3c7e37a4244360f8e34306 https://www.encodeproject.org/files/ENCFF001SZB/@@download/ENCFF001SZB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient read depth ENCFF002CEL bed narrowPeak optimal idr thresholded peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1231983 ENCODE Consortium Analysis Working Group 7ddb20610be6d90b16f37e167c79f019 https://www.encodeproject.org/files/ENCFF002CEL/@@download/ENCFF002CEL.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient read depth ENCFF362OLT bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CEL 2744790 ENCODE Consortium 033329040479d6643b789f371d747cea https://www.encodeproject.org/files/ENCFF362OLT/@@download/ENCFF362OLT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF156TWN bam unfiltered alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BWR, ENCFF643CGH 635103244 ENCODE Processing Pipeline 3952492293c53a8a2759f67caa924fb6 https://www.encodeproject.org/files/ENCFF156TWN/@@download/ENCFF156TWN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF477OGN bam unfiltered alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BWM, ENCFF643CGH 974964076 ENCODE Processing Pipeline 9850a1848ffc2417bf33843091fc8ce9 https://www.encodeproject.org/files/ENCFF477OGN/@@download/ENCFF477OGN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF871GXE bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BWM, ENCFF643CGH 361167135 ENCODE Processing Pipeline f2a54720aa697bf3488d7426e8b588ba https://www.encodeproject.org/files/ENCFF871GXE/@@download/ENCFF871GXE.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF550BMQ bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BWR, ENCFF643CGH 318523205 ENCODE Processing Pipeline a22e331e1d9ff11dfc012eae706e62cc https://www.encodeproject.org/files/ENCFF550BMQ/@@download/ENCFF550BMQ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF370UYP bigWig fold change over control ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF392XRJ, ENCFF871GXE 145433959 ENCODE Processing Pipeline 751ff49c38b539a72bf13d1d57f2637f https://www.encodeproject.org/files/ENCFF370UYP/@@download/ENCFF370UYP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF516LLG bigWig signal p-value ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF392XRJ, ENCFF871GXE 258620911 ENCODE Processing Pipeline 710458df49be7081bf62037af0e261d2 https://www.encodeproject.org/files/ENCFF516LLG/@@download/ENCFF516LLG.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF405AYC bigWig fold change over control ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF392XRJ, ENCFF550BMQ, ENCFF871GXE 283235892 ENCODE Processing Pipeline a7aeeb0b7792c23f53efe6a586cdb87a https://www.encodeproject.org/files/ENCFF405AYC/@@download/ENCFF405AYC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF044KHD bed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF392XRJ, ENCFF871GXE 3101805 ENCODE Processing Pipeline 2f2f9c0d38ebdeedb1c72d8c0b009710 https://www.encodeproject.org/files/ENCFF044KHD/@@download/ENCFF044KHD.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF712ETC bed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF392XRJ, ENCFF550BMQ 4160754 ENCODE Processing Pipeline 03ad07720a9d5b9f61893c2ca50a10a2 https://www.encodeproject.org/files/ENCFF712ETC/@@download/ENCFF712ETC.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF962EIP bigBed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF712ETC 8883728 ENCODE Processing Pipeline d8bc06018cb842f80e623c195c9c6c55 https://www.encodeproject.org/files/ENCFF962EIP/@@download/ENCFF962EIP.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF727BQT bigWig signal p-value ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF392XRJ, ENCFF550BMQ 306555654 ENCODE Processing Pipeline 9e35bea800b868104858bf240903f642 https://www.encodeproject.org/files/ENCFF727BQT/@@download/ENCFF727BQT.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF442ACI bigWig signal p-value ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF392XRJ, ENCFF550BMQ, ENCFF871GXE 325586627 ENCODE Processing Pipeline 9435b22336d6e4590925961503447140 https://www.encodeproject.org/files/ENCFF442ACI/@@download/ENCFF442ACI.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF533HEK bigWig fold change over control ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF392XRJ, ENCFF550BMQ 183035726 ENCODE Processing Pipeline 414cc4e13e250240b4f0627a2c1d6302 https://www.encodeproject.org/files/ENCFF533HEK/@@download/ENCFF533HEK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF519CXF bed narrowPeak optimal idr thresholded peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF044KHD, ENCFF419RSJ, ENCFF712ETC, ENCFF873LHT 873695 ENCODE Processing Pipeline 7828af6ccfcb579226ce54757b98f05b https://www.encodeproject.org/files/ENCFF519CXF/@@download/ENCFF519CXF.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF873LHT bed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF392XRJ, ENCFF550BMQ, ENCFF871GXE 5360130 ENCODE Processing Pipeline 4d84d257fff852f460889186b6e3f077 https://www.encodeproject.org/files/ENCFF873LHT/@@download/ENCFF873LHT.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF604QOX bigBed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF044KHD 7156677 ENCODE Processing Pipeline b812791c8f68131db22cd02aca83e662 https://www.encodeproject.org/files/ENCFF604QOX/@@download/ENCFF604QOX.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF895HAG bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF519CXF 1764282 ENCODE Processing Pipeline 6b5ff5541026a8df8bf09f4736c44e52 https://www.encodeproject.org/files/ENCFF895HAG/@@download/ENCFF895HAG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF609MQG bigBed narrowPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF873LHT 13303942 ENCODE Processing Pipeline 0fdca854e97061cb34329e4a9df87c8d https://www.encodeproject.org/files/ENCFF609MQG/@@download/ENCFF609MQG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF656FMR fastq reads ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF257PAW 2862064642 Richard Myers, HAIB f4a5b9e7feccf128477ebc4498473bf5 SRA:SRR6214164 https://www.encodeproject.org/files/ENCFF656FMR/@@download/ENCFF656FMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF241WBG/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF257PAW fastq reads ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF656FMR 2738559160 Richard Myers, HAIB b60e8ed794fd3500e96cead8cecb4344 SRA:SRR6214164 https://www.encodeproject.org/files/ENCFF257PAW/@@download/ENCFF257PAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF654AVJ/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF763ROO bam unfiltered alignments ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF257PAW, ENCFF656FMR, ENCFF807MUK 4289113940 ENCODE Processing Pipeline 03cd63b03aba46cd000f057e830b837e https://www.encodeproject.org/files/ENCFF763ROO/@@download/ENCFF763ROO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF604MCE bam alignments ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF257PAW, ENCFF656FMR, ENCFF807MUK 2778678037 ENCODE Processing Pipeline 9336207d91bca099db1d1b25cde0bfb5 https://www.encodeproject.org/files/ENCFF604MCE/@@download/ENCFF604MCE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF377WOB bam unfiltered alignments ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF257PAW, ENCFF643CGH, ENCFF656FMR 4275571478 ENCODE Processing Pipeline b5e1444bd16666ce2f4fd49c7be17155 https://www.encodeproject.org/files/ENCFF377WOB/@@download/ENCFF377WOB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF085VAF bam alignments ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF257PAW, ENCFF643CGH, ENCFF656FMR 2783294050 ENCODE Processing Pipeline 8520ead2534e53e0c3804719d20c0922 https://www.encodeproject.org/files/ENCFF085VAF/@@download/ENCFF085VAF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF599UMH bigWig signal p-value ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF085VAF 1253879450 ENCODE Processing Pipeline 8af9e82a725a8ad6ff9a6903a5ad0015 https://www.encodeproject.org/files/ENCFF599UMH/@@download/ENCFF599UMH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF259DCN bed narrowPeak peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF085VAF 5609719 ENCODE Processing Pipeline b8920afb46fa1d9f25c0dd9cba88c850 https://www.encodeproject.org/files/ENCFF259DCN/@@download/ENCFF259DCN.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF864DXD bigBed narrowPeak peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF259DCN 11109160 ENCODE Processing Pipeline ef1d515ef8998477919081b8d3c55434 https://www.encodeproject.org/files/ENCFF864DXD/@@download/ENCFF864DXD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF609BNY bigWig fold change over control ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF085VAF 1007548783 ENCODE Processing Pipeline ddf6d4a47e6c6a19aab0f01978307b93 https://www.encodeproject.org/files/ENCFF609BNY/@@download/ENCFF609BNY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF116VEG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF259DCN, ENCFF419RSJ 2577 ENCODE Processing Pipeline b7463e5813ec21d7e86e6be584463f52 https://www.encodeproject.org/files/ENCFF116VEG/@@download/ENCFF116VEG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF329SEA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116VEG 48043 ENCODE Processing Pipeline 373132df730dee06025dc95507a88e6e https://www.encodeproject.org/files/ENCFF329SEA/@@download/ENCFF329SEA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF369SDR bigWig signal p-value ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF604MCE 1247632843 ENCODE Processing Pipeline 74c5ca6f4b6d4408b86f11f528d696ff https://www.encodeproject.org/files/ENCFF369SDR/@@download/ENCFF369SDR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF938QKL bed narrowPeak peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF604MCE 5547910 ENCODE Processing Pipeline 7da9e1454ba834410306993ded988194 https://www.encodeproject.org/files/ENCFF938QKL/@@download/ENCFF938QKL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF362SRJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF938QKL 2880 ENCODE Processing Pipeline ad9128613d28b9160095e84274513c5c https://www.encodeproject.org/files/ENCFF362SRJ/@@download/ENCFF362SRJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF073BJN bigBed narrowPeak peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF938QKL 10954718 ENCODE Processing Pipeline 22cf49acd539960b2c3945d8c4bc6ba7 https://www.encodeproject.org/files/ENCFF073BJN/@@download/ENCFF073BJN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF381VXQ bigWig fold change over control ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF604MCE 1002079208 ENCODE Processing Pipeline 542f962385a65f4ac807890f36143a4c https://www.encodeproject.org/files/ENCFF381VXQ/@@download/ENCFF381VXQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF692BIM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF362SRJ 47828 ENCODE Processing Pipeline 1642c11c328f65765f8094d6c7f339a7 https://www.encodeproject.org/files/ENCFF692BIM/@@download/ENCFF692BIM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF439JPL fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 1 75 single-ended 1936330158 Bradley Bernstein, Broad e1b3536f0dc07f1a2fd2de0571422d7f SRA:SRR5833049 https://www.encodeproject.org/files/ENCFF439JPL/@@download/ENCFF439JPL.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF967CDT fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 3 1 36 single-ended 1589539176 Bradley Bernstein, Broad 202621e5c6dffc479349b6ef436c489e https://www.encodeproject.org/files/ENCFF967CDT/@@download/ENCFF967CDT.fastq.gz Illumina HiSeq 2000 /files/ENCFF451IDT/, /files/ENCFF643EHE/ archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent control read length ENCFF618AAS fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 3 2 36 single-ended 1257564139 Bradley Bernstein, Broad 92f46441d11f95b4d4cb9e6c82d06a6d https://www.encodeproject.org/files/ENCFF618AAS/@@download/ENCFF618AAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF451IDT/, /files/ENCFF643EHE/ archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent control read length ENCFF236MSV fastq reads ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 1 76 single-ended 955867342 Bradley Bernstein, Broad 0549f08f9449a867955405fdd3bf04ba SRA:SRR5833048 https://www.encodeproject.org/files/ENCFF236MSV/@@download/ENCFF236MSV.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF154OIS bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF807MUK 1161935189 ENCODE Processing Pipeline 8078aa36a15ddef3af27ee82a7a5cd0a https://www.encodeproject.org/files/ENCFF154OIS/@@download/ENCFF154OIS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF456YBO bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF643CGH 1162764541 ENCODE Processing Pipeline 8b9d23ef77a06e6cef6b6090ac894461 https://www.encodeproject.org/files/ENCFF456YBO/@@download/ENCFF456YBO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF306SNU bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF643CGH 2277829518 ENCODE Processing Pipeline fa06c61b88c8a795bb1e7e74d9e9325a https://www.encodeproject.org/files/ENCFF306SNU/@@download/ENCFF306SNU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF898CWV bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF643CGH 915254037 ENCODE Processing Pipeline 7f88781e04365159184035f294d5fefa https://www.encodeproject.org/files/ENCFF898CWV/@@download/ENCFF898CWV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF558XZK bam unfiltered alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF807MUK 2275355151 ENCODE Processing Pipeline 48942fa2f14e730a0963ddb7d4a6df21 https://www.encodeproject.org/files/ENCFF558XZK/@@download/ENCFF558XZK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF562TOQ bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF807MUK 911394392 ENCODE Processing Pipeline b33835fa6ba0e265923e2d0def01bdf6 https://www.encodeproject.org/files/ENCFF562TOQ/@@download/ENCFF562TOQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF279PAE bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF643CGH 1755881038 ENCODE Processing Pipeline cf8caf0e4dbdc8ebab9b913b952e0f9d https://www.encodeproject.org/files/ENCFF279PAE/@@download/ENCFF279PAE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF485RWA bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF807MUK 1749341535 ENCODE Processing Pipeline 21ff0fdb085ee5eac03ee7cc19e8dd79 https://www.encodeproject.org/files/ENCFF485RWA/@@download/ENCFF485RWA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF738ZMP bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 930855211 ENCODE Processing Pipeline 9d77a55012fac8c46e2f893655d7866e https://www.encodeproject.org/files/ENCFF738ZMP/@@download/ENCFF738ZMP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF054QKH bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH 1141221962 ENCODE Processing Pipeline 16482da499c4e488f4c49867e4b62660 https://www.encodeproject.org/files/ENCFF054QKH/@@download/ENCFF054QKH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF426HFK bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF898CWV 869664849 ENCODE Processing Pipeline 0c51d0da1d014e3c096652dccb2f23c0 https://www.encodeproject.org/files/ENCFF426HFK/@@download/ENCFF426HFK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF813HXP bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 1066865256 ENCODE Processing Pipeline 4711b2f91200e30b8b53d6089929417d https://www.encodeproject.org/files/ENCFF813HXP/@@download/ENCFF813HXP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF268BCD bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF898CWV 737375351 ENCODE Processing Pipeline 8ec03a6efd1c7980b703a4224d26a92d https://www.encodeproject.org/files/ENCFF268BCD/@@download/ENCFF268BCD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF435JXH bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF485RWA, ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 1090185106 ENCODE Processing Pipeline 736287690931cd6fabb3805c4c375810 https://www.encodeproject.org/files/ENCFF435JXH/@@download/ENCFF435JXH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF336YAH bigWig signal p-value ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH, ENCFF898CWV 1259602243 ENCODE Processing Pipeline fc1d30f0108e663bac983f5a04b451ed https://www.encodeproject.org/files/ENCFF336YAH/@@download/ENCFF336YAH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF781PNM bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH 1061600593 ENCODE Processing Pipeline 809b8eff57116e25b2b71c26cf09c5fb https://www.encodeproject.org/files/ENCFF781PNM/@@download/ENCFF781PNM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF431WYM bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 741249401 ENCODE Processing Pipeline 9a33d28745e083c17b695fd85e140ae7 https://www.encodeproject.org/files/ENCFF431WYM/@@download/ENCFF431WYM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF199ZUV bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 1067005905 ENCODE Processing Pipeline dc2576b2b3309cb5b5c920a24fdf6022 https://www.encodeproject.org/files/ENCFF199ZUV/@@download/ENCFF199ZUV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF056UDK bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF898CWV 5636506 ENCODE Processing Pipeline 41b22f4b70c794819cdfadefab64c592 https://www.encodeproject.org/files/ENCFF056UDK/@@download/ENCFF056UDK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF384BWK bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH, ENCFF898CWV 1387985143 ENCODE Processing Pipeline 12d985bf38757602c30562cd736d4af5 https://www.encodeproject.org/files/ENCFF384BWK/@@download/ENCFF384BWK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF093KXQ bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF056UDK 13494198 ENCODE Processing Pipeline f4e63f2947f659b5983ac18005d5b45f https://www.encodeproject.org/files/ENCFF093KXQ/@@download/ENCFF093KXQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF386BDU bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH 6287026 ENCODE Processing Pipeline ae7046364352a57349dda79765441f5a https://www.encodeproject.org/files/ENCFF386BDU/@@download/ENCFF386BDU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF664LBN bigWig fold change over control ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF485RWA, ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 1357937857 ENCODE Processing Pipeline 1bafb226e65b9c2b963c9d5847d25522 https://www.encodeproject.org/files/ENCFF664LBN/@@download/ENCFF664LBN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF309TFY bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF386BDU 13626286 ENCODE Processing Pipeline e2c9382faa428ddf2bb26e2bc9c70a0f https://www.encodeproject.org/files/ENCFF309TFY/@@download/ENCFF309TFY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF784FUU bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF684QPN 13406895 ENCODE Processing Pipeline f56cb4335e99add2e58f8512631b2ca1 https://www.encodeproject.org/files/ENCFF784FUU/@@download/ENCFF784FUU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF655FLB bigBed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF096XRG 339605 ENCODE Processing Pipeline 25d5d2b277b42e9baea23484fec46d73 https://www.encodeproject.org/files/ENCFF655FLB/@@download/ENCFF655FLB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF132JCL bigBed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF527XHG 234558 ENCODE Processing Pipeline bb0c7a37919e6b3a41183cf1a3297087 https://www.encodeproject.org/files/ENCFF132JCL/@@download/ENCFF132JCL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF217GDM bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 6279347 ENCODE Processing Pipeline ad8ea3b2b4fa06a29b27ce0434f9a526 https://www.encodeproject.org/files/ENCFF217GDM/@@download/ENCFF217GDM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF735DJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF092GMD 248839 ENCODE Processing Pipeline 0d7bd1201cbedad639852a1785584d7b https://www.encodeproject.org/files/ENCFF735DJZ/@@download/ENCFF735DJZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF413AVP bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF142VHH, ENCFF279PAE, ENCFF401XXH, ENCFF898CWV 6738616 ENCODE Processing Pipeline 57ce3c48ca25be9340e6a0a0b89f7e24 https://www.encodeproject.org/files/ENCFF413AVP/@@download/ENCFF413AVP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF684QPN bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 5914572 ENCODE Processing Pipeline 6b8a24098c28824fb58252e4986c6a31 https://www.encodeproject.org/files/ENCFF684QPN/@@download/ENCFF684QPN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF096XRG bed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF056UDK, ENCFF386BDU, ENCFF413AVP, ENCFF419RSJ 134070 ENCODE Processing Pipeline 09621cf52ce936bec51f40622f0870ab https://www.encodeproject.org/files/ENCFF096XRG/@@download/ENCFF096XRG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF189CXF bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF413AVP 13464090 ENCODE Processing Pipeline 138c3279e5976137cc894590487987ee https://www.encodeproject.org/files/ENCFF189CXF/@@download/ENCFF189CXF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF092GMD bed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF056UDK, ENCFF386BDU, ENCFF413AVP, ENCFF419RSJ 109901 ENCODE Processing Pipeline d63289aa4cf72a528580cb91e237a5ba https://www.encodeproject.org/files/ENCFF092GMD/@@download/ENCFF092GMD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF801ULT bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF485RWA, ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 6869005 ENCODE Processing Pipeline 1377b3f2fd0dc022e31a67c7c6407ccc https://www.encodeproject.org/files/ENCFF801ULT/@@download/ENCFF801ULT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF535DQH bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF217GDM 13586840 ENCODE Processing Pipeline 4fb5663accaafb6c184c5fdac4128afc https://www.encodeproject.org/files/ENCFF535DQH/@@download/ENCFF535DQH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF261BWU bigBed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF801ULT 13355094 ENCODE Processing Pipeline 4cba2146f2b8ef3f231ba17d479643bf https://www.encodeproject.org/files/ENCFF261BWU/@@download/ENCFF261BWU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF917CXD bed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF217GDM, ENCFF684QPN, ENCFF801ULT 136236 ENCODE Processing Pipeline 80e778a2362eb91eb3f36ec00813c9d6 https://www.encodeproject.org/files/ENCFF917CXD/@@download/ENCFF917CXD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF527XHG bed narrowPeak conservative idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF217GDM, ENCFF684QPN, ENCFF801ULT 101110 ENCODE Processing Pipeline cf1d063b6ca6d1a88ef09326759479a7 https://www.encodeproject.org/files/ENCFF527XHG/@@download/ENCFF527XHG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF818IPG bigBed narrowPeak optimal idr thresholded peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF917CXD 341603 ENCODE Processing Pipeline 6cedc1b5816bbe839faf367b5735cd1e https://www.encodeproject.org/files/ENCFF818IPG/@@download/ENCFF818IPG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF779XEB fastq reads ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF277TIE 3219891071 Richard Myers, HAIB 589fa875bef84b456b737e7e353ed51b SRA:SRR6213912 https://www.encodeproject.org/files/ENCFF779XEB/@@download/ENCFF779XEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF794FIO/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF277TIE fastq reads ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF779XEB 3312711266 Richard Myers, HAIB fc7f74282f6900f97abb229870ef7f6d SRA:SRR6213912 https://www.encodeproject.org/files/ENCFF277TIE/@@download/ENCFF277TIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF667MAD/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF537ZJG bam unfiltered alignments ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF277TIE, ENCFF779XEB, ENCFF807MUK 7767563150 ENCODE Processing Pipeline 91333bdfc03be48cc412e88ced21583b https://www.encodeproject.org/files/ENCFF537ZJG/@@download/ENCFF537ZJG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF696DSP bam alignments ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF277TIE, ENCFF779XEB, ENCFF807MUK 4525330779 ENCODE Processing Pipeline 6c344d73797aadb0e46af657f9ac118c https://www.encodeproject.org/files/ENCFF696DSP/@@download/ENCFF696DSP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF244WFQ bam unfiltered alignments ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF277TIE, ENCFF643CGH, ENCFF779XEB 7819757883 ENCODE Processing Pipeline 40941a0dd4917f3e7d0ee0a1d6f18f41 https://www.encodeproject.org/files/ENCFF244WFQ/@@download/ENCFF244WFQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF924UDG bam alignments ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF277TIE, ENCFF643CGH, ENCFF779XEB 4526897341 ENCODE Processing Pipeline ac1ab3f19e6503897d27409acec92c37 https://www.encodeproject.org/files/ENCFF924UDG/@@download/ENCFF924UDG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF780TNS bigBed narrowPeak peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF271TFD 11673942 ENCODE Processing Pipeline 36e415c76d62f272a942b1b9ef5b214f https://www.encodeproject.org/files/ENCFF780TNS/@@download/ENCFF780TNS.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF319XHW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF992XPI 128074 ENCODE Processing Pipeline 64fed34745df05ca0aeb95b2b3113e9b https://www.encodeproject.org/files/ENCFF319XHW/@@download/ENCFF319XHW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF130YDU bigWig signal p-value ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF924UDG 1016814456 ENCODE Processing Pipeline bd74010562e12584706e3ded7fb213a5 https://www.encodeproject.org/files/ENCFF130YDU/@@download/ENCFF130YDU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF755ELJ bigWig fold change over control ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF924UDG 1279998556 ENCODE Processing Pipeline 7f5587595d527c8dd97a2a44b760e813 https://www.encodeproject.org/files/ENCFF755ELJ/@@download/ENCFF755ELJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF271TFD bed narrowPeak peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF924UDG 5315333 ENCODE Processing Pipeline 7b47703570eb3795ad800288b9bf492b https://www.encodeproject.org/files/ENCFF271TFD/@@download/ENCFF271TFD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF992XPI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF271TFD, ENCFF419RSJ 43368 ENCODE Processing Pipeline e1390cb9537e5878956d5490a84826f9 https://www.encodeproject.org/files/ENCFF992XPI/@@download/ENCFF992XPI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF159CDC bigWig signal p-value ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF696DSP 1014980891 ENCODE Processing Pipeline 5bea84acb97a9c25c784bc8e0f0ed727 https://www.encodeproject.org/files/ENCFF159CDC/@@download/ENCFF159CDC.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF854RKR bed narrowPeak peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF696DSP 5254882 ENCODE Processing Pipeline f2a2ee8ab8cd634f5a8da5952b6944e3 https://www.encodeproject.org/files/ENCFF854RKR/@@download/ENCFF854RKR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF150ABP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF854RKR 44597 ENCODE Processing Pipeline 82ec00c9b00f4be641952440a96add9b https://www.encodeproject.org/files/ENCFF150ABP/@@download/ENCFF150ABP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF040LCW bigWig fold change over control ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF696DSP 1263769097 ENCODE Processing Pipeline 3056f277f3eab15bc9c773e83ffb2dfa https://www.encodeproject.org/files/ENCFF040LCW/@@download/ENCFF040LCW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF489YYS bigBed narrowPeak peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF854RKR 11654341 ENCODE Processing Pipeline 42d15970799650a01a922e5331fb476e https://www.encodeproject.org/files/ENCFF489YYS/@@download/ENCFF489YYS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF081DVZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF150ABP 134637 ENCODE Processing Pipeline ed0f924d1ab6a8af7203115de5d22d0c https://www.encodeproject.org/files/ENCFF081DVZ/@@download/ENCFF081DVZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF239VIA bam unfiltered alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTW, ENCFF002DUG, ENCFF807MUK 7528384265 ENCODE Processing Pipeline 7eb7c33a992c1623b46fa667bb293f72 https://www.encodeproject.org/files/ENCFF239VIA/@@download/ENCFF239VIA.bam hg19 released antibody characterized with exemption ENCFF657FPP bam unfiltered alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHA, ENCFF002EHG, ENCFF807MUK 6334057186 ENCODE Processing Pipeline 7788fba2f7b162072e5dfbba15cb3764 https://www.encodeproject.org/files/ENCFF657FPP/@@download/ENCFF657FPP.bam hg19 released antibody characterized with exemption ENCFF002DTW fastq reads ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DUG 3497749895 Michael Snyder, Stanford ccdb0be149fb264cea16007e6574a471 SRA:SRR6214024 https://www.encodeproject.org/files/ENCFF002DTW/@@download/ENCFF002DTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released antibody characterized with exemption ENCFF002DUG fastq reads ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002DTW 3472800112 Michael Snyder, Stanford 127ee0f8bea97451ca47caa8eb697162 SRA:SRR6214024 https://www.encodeproject.org/files/ENCFF002DUG/@@download/ENCFF002DUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released antibody characterized with exemption ENCFF002EHA fastq reads ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EHG 2790743220 Michael Snyder, Stanford 6775fd907bff066c3ff969639a152f01 SRA:SRR6214023 https://www.encodeproject.org/files/ENCFF002EHA/@@download/ENCFF002EHA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released antibody characterized with exemption ENCFF002EHG fastq reads ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHA 2737432039 Michael Snyder, Stanford de8bd2dd11f5a804b2470450f32842da SRA:SRR6214023 https://www.encodeproject.org/files/ENCFF002EHG/@@download/ENCFF002EHG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released antibody characterized with exemption ENCFF253MVW bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHA, ENCFF002EHG, ENCFF807MUK 5264533735 ENCODE Processing Pipeline 385be90c87b733a20da1c008b324c365 https://www.encodeproject.org/files/ENCFF253MVW/@@download/ENCFF253MVW.bam hg19 released antibody characterized with exemption ENCFF140ELP bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTW, ENCFF002DUG, ENCFF807MUK 6620392601 ENCODE Processing Pipeline 39bfb6a2a8f12fb1891ca9430b82a4e7 https://www.encodeproject.org/files/ENCFF140ELP/@@download/ENCFF140ELP.bam hg19 released antibody characterized with exemption ENCFF833BKY bigWig signal p-value ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF140ELP, ENCFF253MVW, ENCFF583FAG 1644615536 ENCODE Processing Pipeline 1aaaea01222e41d499e5a7865c46c585 https://www.encodeproject.org/files/ENCFF833BKY/@@download/ENCFF833BKY.bigWig hg19 released antibody characterized with exemption ENCFF839ULD bigWig fold change over control ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF140ELP, ENCFF253MVW, ENCFF583FAG 2232401530 ENCODE Processing Pipeline 4b2b9b7f1ac7b09db8dd78f12eaeae60 https://www.encodeproject.org/files/ENCFF839ULD/@@download/ENCFF839ULD.bigWig hg19 released antibody characterized with exemption ENCFF234MEE bam unfiltered alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHA, ENCFF002EHG, ENCFF643CGH 6353513655 ENCODE Processing Pipeline 9346e70baf8c6fb039cb3135df6dbd94 https://www.encodeproject.org/files/ENCFF234MEE/@@download/ENCFF234MEE.bam GRCh38 released antibody characterized with exemption ENCFF028JDJ bam unfiltered alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTW, ENCFF002DUG, ENCFF643CGH 7541954521 ENCODE Processing Pipeline e6ac3caf46c78561e5e5755132af35c3 https://www.encodeproject.org/files/ENCFF028JDJ/@@download/ENCFF028JDJ.bam GRCh38 released antibody characterized with exemption ENCFF243OVT bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHA, ENCFF002EHG, ENCFF643CGH 5268996482 ENCODE Processing Pipeline dd43b45233d1e6dc3e721a8a67046569 https://www.encodeproject.org/files/ENCFF243OVT/@@download/ENCFF243OVT.bam GRCh38 released antibody characterized with exemption ENCFF689GLS bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTW, ENCFF002DUG, ENCFF643CGH 6624752927 ENCODE Processing Pipeline 0d805d4e63c732786f056271891154d0 https://www.encodeproject.org/files/ENCFF689GLS/@@download/ENCFF689GLS.bam GRCh38 released antibody characterized with exemption ENCFF009LXQ bigWig signal p-value ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF243OVT, ENCFF426RDP 1123701156 ENCODE Processing Pipeline 2fb4f8de78bdce9e8a675646a1016d66 https://www.encodeproject.org/files/ENCFF009LXQ/@@download/ENCFF009LXQ.bigWig GRCh38 released antibody characterized with exemption ENCFF199NDE bigWig signal p-value ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF689GLS 1706598332 ENCODE Processing Pipeline 7784afbf41226211c2dd36c265c21ad8 https://www.encodeproject.org/files/ENCFF199NDE/@@download/ENCFF199NDE.bigWig GRCh38 released antibody characterized with exemption ENCFF002LUO bigWig signal p-value ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF243OVT, ENCFF291AFY, ENCFF426RDP, ENCFF689GLS 1761548679 ENCODE Processing Pipeline 9a222ecb23fd027428db15f2f4cffb67 https://www.encodeproject.org/files/ENCFF002LUO/@@download/ENCFF002LUO.bigWig GRCh38 released antibody characterized with exemption ENCFF675NSV bigWig fold change over control ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF243OVT, ENCFF426RDP 1130723176 ENCODE Processing Pipeline d2effdf047254214cac7aac12ccc4754 https://www.encodeproject.org/files/ENCFF675NSV/@@download/ENCFF675NSV.bigWig GRCh38 released antibody characterized with exemption ENCFF157DCE bigWig fold change over control ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF689GLS 1776435830 ENCODE Processing Pipeline 307f7f4917a0bd6e217374996ec6cc75 https://www.encodeproject.org/files/ENCFF157DCE/@@download/ENCFF157DCE.bigWig GRCh38 released antibody characterized with exemption ENCFF291QJT bigWig fold change over control ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF243OVT, ENCFF291AFY, ENCFF426RDP, ENCFF689GLS 2275831094 ENCODE Processing Pipeline 913c1a28dfd20a1c1ff40a27a26e4e9f https://www.encodeproject.org/files/ENCFF291QJT/@@download/ENCFF291QJT.bigWig GRCh38 released antibody characterized with exemption ENCFF159FST bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF243OVT, ENCFF426RDP 6215489 ENCODE Processing Pipeline cfd019603dd8649dc888e18e85000a1d https://www.encodeproject.org/files/ENCFF159FST/@@download/ENCFF159FST.bed.gz GRCh38 released antibody characterized with exemption ENCFF004IQE bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF689GLS 6785469 ENCODE Processing Pipeline d34520cd0af29cf4f8c9717ee752a8f6 https://www.encodeproject.org/files/ENCFF004IQE/@@download/ENCFF004IQE.bed.gz GRCh38 released antibody characterized with exemption ENCFF539TAO bigBed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF004IQE 11290248 ENCODE Processing Pipeline ac2245d3ad460efaffeffa59dbd95be2 https://www.encodeproject.org/files/ENCFF539TAO/@@download/ENCFF539TAO.bigBed GRCh38 released antibody characterized with exemption ENCFF577WZD bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF243OVT, ENCFF291AFY, ENCFF426RDP, ENCFF689GLS 7177516 ENCODE Processing Pipeline 7468f80b1343122a9a638f9b02b94948 https://www.encodeproject.org/files/ENCFF577WZD/@@download/ENCFF577WZD.bed.gz GRCh38 released antibody characterized with exemption ENCFF240XHH bigBed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF577WZD 13369807 ENCODE Processing Pipeline a1b70132e19ee85c85255a97e9bd8dd2 https://www.encodeproject.org/files/ENCFF240XHH/@@download/ENCFF240XHH.bigBed GRCh38 released antibody characterized with exemption ENCFF103MPW bed narrowPeak optimal idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF004IQE, ENCFF159FST, ENCFF419RSJ, ENCFF577WZD 218239 ENCODE Processing Pipeline 81271759ee7dcb99c09c67a8648db5b5 https://www.encodeproject.org/files/ENCFF103MPW/@@download/ENCFF103MPW.bed.gz GRCh38 released antibody characterized with exemption ENCFF986AAT bigBed narrowPeak optimal idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF103MPW 461892 ENCODE Processing Pipeline b3bd31b973154d30f7e30f9f9e99adb8 https://www.encodeproject.org/files/ENCFF986AAT/@@download/ENCFF986AAT.bigBed GRCh38 released antibody characterized with exemption ENCFF862CAQ bigBed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF159FST 11252768 ENCODE Processing Pipeline fffecfefcf6fabc53235752547feb465 https://www.encodeproject.org/files/ENCFF862CAQ/@@download/ENCFF862CAQ.bigBed GRCh38 released antibody characterized with exemption ENCFF112WBJ bed narrowPeak conservative idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF004IQE, ENCFF159FST, ENCFF419RSJ, ENCFF577WZD 175817 ENCODE Processing Pipeline 8f836c742587edd26ab9b2b216eb89b6 https://www.encodeproject.org/files/ENCFF112WBJ/@@download/ENCFF112WBJ.bed.gz GRCh38 released antibody characterized with exemption ENCFF305NQQ bigBed narrowPeak conservative idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF112WBJ 398538 ENCODE Processing Pipeline 26cbc22434f42f04bb8ddff6e5d9476b https://www.encodeproject.org/files/ENCFF305NQQ/@@download/ENCFF305NQQ.bigBed GRCh38 released antibody characterized with exemption ENCFF209AHL bigWig signal p-value ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF253MVW, ENCFF583FAG 1099444048 ENCODE Processing Pipeline b8c10fc33fd2f9c40ca05168f60d5c1e https://www.encodeproject.org/files/ENCFF209AHL/@@download/ENCFF209AHL.bigWig hg19 released antibody characterized with exemption ENCFF713VUD bigWig fold change over control ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF253MVW, ENCFF583FAG 1129278718 ENCODE Processing Pipeline ea621ddd1bc471ac579f687ffc62fb60 https://www.encodeproject.org/files/ENCFF713VUD/@@download/ENCFF713VUD.bigWig hg19 released antibody characterized with exemption ENCFF313TIR bigWig signal p-value ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF140ELP, ENCFF583FAG 1720074322 ENCODE Processing Pipeline e9c3d4ebb589fe165075c70b9192dca8 https://www.encodeproject.org/files/ENCFF313TIR/@@download/ENCFF313TIR.bigWig hg19 released antibody characterized with exemption ENCFF613VIP bigWig fold change over control ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF140ELP, ENCFF583FAG 1784497325 ENCODE Processing Pipeline d2aae83cabf8980532c8bd3dc7e4fac0 https://www.encodeproject.org/files/ENCFF613VIP/@@download/ENCFF613VIP.bigWig hg19 released antibody characterized with exemption ENCFF244BTT bigBed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF376EFD 13357682 ENCODE Processing Pipeline a4557472e9c6bf24bee9c3f55d3cd8d3 https://www.encodeproject.org/files/ENCFF244BTT/@@download/ENCFF244BTT.bigBed hg19 released antibody characterized with exemption ENCFF949QZO bed narrowPeak optimal idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF366JFG, ENCFF376EFD, ENCFF458VAF 216700 ENCODE Processing Pipeline d9edd7a6a711bbc6213e1cd02d1230f2 https://www.encodeproject.org/files/ENCFF949QZO/@@download/ENCFF949QZO.bed.gz hg19 released antibody characterized with exemption ENCFF366JFG bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF253MVW, ENCFF583FAG 6211597 ENCODE Processing Pipeline 71fdc5bff6a4fe9f846ed56491c27998 https://www.encodeproject.org/files/ENCFF366JFG/@@download/ENCFF366JFG.bed.gz hg19 released antibody characterized with exemption ENCFF458VAF bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF140ELP, ENCFF583FAG 6781614 ENCODE Processing Pipeline e3cc23ee7d187047a4a7a8fe7da20e68 https://www.encodeproject.org/files/ENCFF458VAF/@@download/ENCFF458VAF.bed.gz hg19 released antibody characterized with exemption ENCFF376EFD bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF140ELP, ENCFF253MVW, ENCFF583FAG 7162737 ENCODE Processing Pipeline 8618d500f11bc7ad69bce09c7fd2bab9 https://www.encodeproject.org/files/ENCFF376EFD/@@download/ENCFF376EFD.bed.gz hg19 released antibody characterized with exemption ENCFF471PGK bigBed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF366JFG 11234012 ENCODE Processing Pipeline 72c97292bb26843c4dcd88d7d56905d4 https://www.encodeproject.org/files/ENCFF471PGK/@@download/ENCFF471PGK.bigBed hg19 released antibody characterized with exemption ENCFF558PWD bigBed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF458VAF 11273575 ENCODE Processing Pipeline c2db260dcdcc8e970aae9c027207146d https://www.encodeproject.org/files/ENCFF558PWD/@@download/ENCFF558PWD.bigBed hg19 released antibody characterized with exemption ENCFF247HTF bed narrowPeak conservative idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF366JFG, ENCFF376EFD, ENCFF458VAF 176775 ENCODE Processing Pipeline 34bdf824924989c6e2e02f1111399d29 https://www.encodeproject.org/files/ENCFF247HTF/@@download/ENCFF247HTF.bed.gz hg19 released antibody characterized with exemption ENCFF864HJK bigBed narrowPeak conservative idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF247HTF 398035 ENCODE Processing Pipeline d286a6eeec79fd62fcdb7ef421e64092 https://www.encodeproject.org/files/ENCFF864HJK/@@download/ENCFF864HJK.bigBed hg19 released antibody characterized with exemption ENCFF339PHL bigBed narrowPeak optimal idr thresholded peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF949QZO 458068 ENCODE Processing Pipeline f0ba5dff33c81f8a179818718285daee https://www.encodeproject.org/files/ENCFF339PHL/@@download/ENCFF339PHL.bigBed hg19 released antibody characterized with exemption ENCFF735IUI fastq reads ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1875958145 Bradley Bernstein, Broad 70ce2d2ffd3d7c728d48fe3070f7023e SRA:SRR5832925 https://www.encodeproject.org/files/ENCFF735IUI/@@download/ENCFF735IUI.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released missing control alignments ENCFF093KEW fastq reads ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1406446764 Bradley Bernstein, Broad 2c150ab7261d8b921728ff9ed141d3fc SRA:SRR5832924 https://www.encodeproject.org/files/ENCFF093KEW/@@download/ENCFF093KEW.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released missing control alignments ENCFF380YDR bam unfiltered alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF093KEW, ENCFF643CGH 1691832234 ENCODE Processing Pipeline 32439adb588ccd73c15e4b772882224b https://www.encodeproject.org/files/ENCFF380YDR/@@download/ENCFF380YDR.bam GRCh38 released missing control alignments ENCFF824VMP bam unfiltered alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF643CGH, ENCFF735IUI 2216019664 ENCODE Processing Pipeline f4630d7bf8f9f0ee4263211c70a0f569 https://www.encodeproject.org/files/ENCFF824VMP/@@download/ENCFF824VMP.bam GRCh38 released missing control alignments ENCFF364GLZ bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF093KEW, ENCFF643CGH 1399362042 ENCODE Processing Pipeline b23bde2622b5e09d3a78db821c2fe058 https://www.encodeproject.org/files/ENCFF364GLZ/@@download/ENCFF364GLZ.bam GRCh38 released missing control alignments ENCFF865TZQ bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF643CGH, ENCFF735IUI 1787364545 ENCODE Processing Pipeline 7dca90d2eac38c15365fdbf57cb99202 https://www.encodeproject.org/files/ENCFF865TZQ/@@download/ENCFF865TZQ.bam GRCh38 released missing control alignments ENCFF130UTO bam unfiltered alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF093KEW, ENCFF807MUK 1686287021 ENCODE Processing Pipeline c9753d3b5a3a9e8769b5f1d19e30a470 https://www.encodeproject.org/files/ENCFF130UTO/@@download/ENCFF130UTO.bam hg19 released missing control alignments ENCFF651TUI bam unfiltered alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF735IUI, ENCFF807MUK 2209378664 ENCODE Processing Pipeline f3af9061907b0764e231b7ecb90a35cb https://www.encodeproject.org/files/ENCFF651TUI/@@download/ENCFF651TUI.bam hg19 released missing control alignments ENCFF708YID bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF093KEW, ENCFF807MUK 1397626577 ENCODE Processing Pipeline 3b2805b9c95c5b80049fa54920f5f811 https://www.encodeproject.org/files/ENCFF708YID/@@download/ENCFF708YID.bam hg19 released missing control alignments ENCFF484DFP bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF735IUI, ENCFF807MUK 1784486613 ENCODE Processing Pipeline 8c7a0ecdbdf4a99537d6d1e985ec3088 https://www.encodeproject.org/files/ENCFF484DFP/@@download/ENCFF484DFP.bam hg19 released missing control alignments ENCFF071DQQ bigWig signal p-value ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF865TZQ 1066445681 ENCODE Processing Pipeline 33b135ae73721b459a5a610f737b4c9c https://www.encodeproject.org/files/ENCFF071DQQ/@@download/ENCFF071DQQ.bigWig GRCh38 released missing control alignments ENCFF640ILD bigWig fold change over control ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF865TZQ 1166644136 ENCODE Processing Pipeline d5229a76c36623bb8d04da933907cccd https://www.encodeproject.org/files/ENCFF640ILD/@@download/ENCFF640ILD.bigWig GRCh38 released missing control alignments ENCFF876WGW bigWig signal p-value ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF364GLZ 1009547525 ENCODE Processing Pipeline 9b1a8277095df5c3cea55b40e3137fec https://www.encodeproject.org/files/ENCFF876WGW/@@download/ENCFF876WGW.bigWig GRCh38 released missing control alignments ENCFF059CIA bigWig signal p-value ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364GLZ, ENCFF865TZQ 1320960980 ENCODE Processing Pipeline b1bd0a0903afaa2006247375b37bb83c https://www.encodeproject.org/files/ENCFF059CIA/@@download/ENCFF059CIA.bigWig GRCh38 released missing control alignments ENCFF890MOE bigWig fold change over control ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF364GLZ 1047284867 ENCODE Processing Pipeline 9fee45c1bc3efb4d3f098265935377e5 https://www.encodeproject.org/files/ENCFF890MOE/@@download/ENCFF890MOE.bigWig GRCh38 released missing control alignments ENCFF472JWG bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364GLZ, ENCFF865TZQ 7017570 ENCODE Processing Pipeline 4eb0624b40add7cb52787badf258778e https://www.encodeproject.org/files/ENCFF472JWG/@@download/ENCFF472JWG.bed.gz GRCh38 released missing control alignments ENCFF537LHI bigBed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF719CWM 13449535 ENCODE Processing Pipeline 6879ad4539051272c0e9b45da86c10cc https://www.encodeproject.org/files/ENCFF537LHI/@@download/ENCFF537LHI.bigBed GRCh38 released missing control alignments ENCFF814DAF bed narrowPeak optimal idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF419RSJ, ENCFF472JWG, ENCFF719CWM, ENCFF817AFC 75421 ENCODE Processing Pipeline 071533de29a0986d057d7ee85b4a5a3b https://www.encodeproject.org/files/ENCFF814DAF/@@download/ENCFF814DAF.bed.gz GRCh38 released missing control alignments ENCFF543YLG bigWig fold change over control ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364GLZ, ENCFF865TZQ 1583371906 ENCODE Processing Pipeline e6a1b0b273ccedacdd2afa53d9839e00 https://www.encodeproject.org/files/ENCFF543YLG/@@download/ENCFF543YLG.bigWig GRCh38 released missing control alignments ENCFF817AFC bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF865TZQ 6307549 ENCODE Processing Pipeline 50735ffdac11fe384107c5ec12413e66 https://www.encodeproject.org/files/ENCFF817AFC/@@download/ENCFF817AFC.bed.gz GRCh38 released missing control alignments ENCFF719CWM bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF364GLZ 6461463 ENCODE Processing Pipeline 08b93e5a7894052cb52e4aef18fffbce https://www.encodeproject.org/files/ENCFF719CWM/@@download/ENCFF719CWM.bed.gz GRCh38 released missing control alignments ENCFF442XXN bigBed narrowPeak conservative idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF402JCS 172453 ENCODE Processing Pipeline c66b7a0179f9e072ea29697a3c5db39d https://www.encodeproject.org/files/ENCFF442XXN/@@download/ENCFF442XXN.bigBed GRCh38 released missing control alignments ENCFF404VAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF814DAF 197126 ENCODE Processing Pipeline 5d380dfab684773a292478ffca35532f https://www.encodeproject.org/files/ENCFF404VAQ/@@download/ENCFF404VAQ.bigBed GRCh38 released missing control alignments ENCFF823RNV bigBed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF817AFC 13632106 ENCODE Processing Pipeline 0aae2ac554b5f458513dfb51852d1f18 https://www.encodeproject.org/files/ENCFF823RNV/@@download/ENCFF823RNV.bigBed GRCh38 released missing control alignments ENCFF055NSL bigBed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF472JWG 13448604 ENCODE Processing Pipeline 4ef308ac3596d729e7d37a089cfba6d6 https://www.encodeproject.org/files/ENCFF055NSL/@@download/ENCFF055NSL.bigBed GRCh38 released missing control alignments ENCFF402JCS bed narrowPeak conservative idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF419RSJ, ENCFF472JWG, ENCFF719CWM, ENCFF817AFC 60713 ENCODE Processing Pipeline 6a421e1e8b3ed700fc46ac381d466906 https://www.encodeproject.org/files/ENCFF402JCS/@@download/ENCFF402JCS.bed.gz GRCh38 released missing control alignments ENCFF860JZY bigWig signal p-value ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF484DFP, ENCFF801GGG, ENCFF881DVS 1294085228 ENCODE Processing Pipeline 56e280aefdff9d32a162b7624ac4ff2c https://www.encodeproject.org/files/ENCFF860JZY/@@download/ENCFF860JZY.bigWig hg19 released missing control alignments ENCFF313XOF bigWig fold change over control ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF484DFP, ENCFF708YID, ENCFF801GGG, ENCFF881DVS 1585055784 ENCODE Processing Pipeline a536554198b113360d0277dfd75f9a7c https://www.encodeproject.org/files/ENCFF313XOF/@@download/ENCFF313XOF.bigWig hg19 released missing control alignments ENCFF047HRL bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF484DFP, ENCFF708YID, ENCFF801GGG, ENCFF881DVS 7038842 ENCODE Processing Pipeline 228b27be0cfcce4cd3c61086c747c159 https://www.encodeproject.org/files/ENCFF047HRL/@@download/ENCFF047HRL.bed.gz hg19 released missing control alignments ENCFF619SXZ bigWig fold change over control ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF708YID, ENCFF801GGG, ENCFF881DVS 1027226092 ENCODE Processing Pipeline c215d343331be5911a2c2f353bb1ec40 https://www.encodeproject.org/files/ENCFF619SXZ/@@download/ENCFF619SXZ.bigWig hg19 released missing control alignments ENCFF960ZLU bigBed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF480BUU 13589751 ENCODE Processing Pipeline b47b9ae14b5faec07b753921ef209628 https://www.encodeproject.org/files/ENCFF960ZLU/@@download/ENCFF960ZLU.bigBed hg19 released missing control alignments ENCFF782FLX bigWig signal p-value ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF484DFP, ENCFF708YID, ENCFF801GGG, ENCFF881DVS 1498796291 ENCODE Processing Pipeline 781645e73d4c04cc7f748d9f46132352 https://www.encodeproject.org/files/ENCFF782FLX/@@download/ENCFF782FLX.bigWig hg19 released missing control alignments ENCFF480BUU bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF484DFP, ENCFF801GGG, ENCFF881DVS 6385654 ENCODE Processing Pipeline 97c78f4b0f71735d633e92d7e9bec405 https://www.encodeproject.org/files/ENCFF480BUU/@@download/ENCFF480BUU.bed.gz hg19 released missing control alignments ENCFF882OVT bigWig signal p-value ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF708YID, ENCFF801GGG, ENCFF881DVS 1133050279 ENCODE Processing Pipeline 93c944bedeeacb5578bcf12d3ee781b0 https://www.encodeproject.org/files/ENCFF882OVT/@@download/ENCFF882OVT.bigWig hg19 released missing control alignments ENCFF736VFQ bigWig fold change over control ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF484DFP, ENCFF801GGG, ENCFF881DVS 1162754737 ENCODE Processing Pipeline 202da792fdc3d9cfb40865f07e81eedd https://www.encodeproject.org/files/ENCFF736VFQ/@@download/ENCFF736VFQ.bigWig hg19 released missing control alignments ENCFF869FPC bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF708YID, ENCFF801GGG, ENCFF881DVS 6521460 ENCODE Processing Pipeline 044447908dfa91b726508ee6e9bc13bd https://www.encodeproject.org/files/ENCFF869FPC/@@download/ENCFF869FPC.bed.gz hg19 released missing control alignments ENCFF948NDR bigBed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF869FPC 13401214 ENCODE Processing Pipeline c5c2c83213234b255f092656b116a3c3 https://www.encodeproject.org/files/ENCFF948NDR/@@download/ENCFF948NDR.bigBed hg19 released missing control alignments ENCFF569KPD bigBed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF047HRL 13357686 ENCODE Processing Pipeline 40bd7f7b92476aa93989149ded402b38 https://www.encodeproject.org/files/ENCFF569KPD/@@download/ENCFF569KPD.bigBed hg19 released missing control alignments ENCFF801YBY bed narrowPeak conservative idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF047HRL, ENCFF480BUU, ENCFF869FPC 57069 ENCODE Processing Pipeline 02dcf0664ec6cdf784cc6bec7f17b6ff https://www.encodeproject.org/files/ENCFF801YBY/@@download/ENCFF801YBY.bed.gz hg19 released missing control alignments ENCFF415WEH bed narrowPeak optimal idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF047HRL, ENCFF480BUU, ENCFF869FPC 69758 ENCODE Processing Pipeline e570ad6a282afc9b551d1bc3c785260e https://www.encodeproject.org/files/ENCFF415WEH/@@download/ENCFF415WEH.bed.gz hg19 released missing control alignments ENCFF029UTI bigBed narrowPeak optimal idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF415WEH 186050 ENCODE Processing Pipeline 4a27892e0effa3cc411d72e104f1d4ce https://www.encodeproject.org/files/ENCFF029UTI/@@download/ENCFF029UTI.bigBed hg19 released missing control alignments ENCFF798BVD bigBed narrowPeak conservative idr thresholded peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF801YBY 164515 ENCODE Processing Pipeline f0f7a32d8a2af41ff62635f015a0d2d1 https://www.encodeproject.org/files/ENCFF798BVD/@@download/ENCFF798BVD.bigBed hg19 released missing control alignments ENCFF293WGN fastq reads ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF823QEH 1682171011 Richard Myers, HAIB 3912f8277a536987e668d4dbbee58142 https://www.encodeproject.org/files/ENCFF293WGN/@@download/ENCFF293WGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF847SHO/ released antibody characterized with exemption experiment not submitted to GEO ENCFF823QEH fastq reads ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF293WGN 1771440160 Richard Myers, HAIB b9c6bf34dc9cb3c41348ab5a7fabca71 https://www.encodeproject.org/files/ENCFF823QEH/@@download/ENCFF823QEH.fastq.gz Illumina HiSeq 2000 /files/ENCFF386SNG/ released antibody characterized with exemption experiment not submitted to GEO ENCFF650FQG bam unfiltered alignments ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF293WGN, ENCFF643CGH, ENCFF823QEH 3656182754 ENCODE Processing Pipeline 99af48d54c2a170a5df359c256c200b9 https://www.encodeproject.org/files/ENCFF650FQG/@@download/ENCFF650FQG.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF728OLR bam unfiltered alignments ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF293WGN, ENCFF807MUK, ENCFF823QEH 3654873698 ENCODE Processing Pipeline 73b3a826bf3c9858d49b855562d8e7f4 https://www.encodeproject.org/files/ENCFF728OLR/@@download/ENCFF728OLR.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF729YXL bam alignments ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF293WGN, ENCFF643CGH, ENCFF823QEH 2277237452 ENCODE Processing Pipeline 0e1eed2c3abe1113e3369912290b3b49 https://www.encodeproject.org/files/ENCFF729YXL/@@download/ENCFF729YXL.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF925ORI bam alignments ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF293WGN, ENCFF807MUK, ENCFF823QEH 2277542530 ENCODE Processing Pipeline 90bb2363e223ee576676dba37f37ef18 https://www.encodeproject.org/files/ENCFF925ORI/@@download/ENCFF925ORI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF606GLW bed narrowPeak peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF603BPO, ENCFF729YXL 6240780 ENCODE Processing Pipeline 579957e8a721f7391f5d2fc4b51fcaee https://www.encodeproject.org/files/ENCFF606GLW/@@download/ENCFF606GLW.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF490YTS bigBed narrowPeak peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF606GLW 11541537 ENCODE Processing Pipeline 4d64e35dee06ebd0a1c049b3445809fa https://www.encodeproject.org/files/ENCFF490YTS/@@download/ENCFF490YTS.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF171TGQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF265CIX 2516455 ENCODE Processing Pipeline bfa9aca7e91305204ead18e29f2e1f87 https://www.encodeproject.org/files/ENCFF171TGQ/@@download/ENCFF171TGQ.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF192GGA bigWig signal p-value ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF603BPO, ENCFF729YXL 765165977 ENCODE Processing Pipeline 01cf576f307f373ad2ec1068597c9619 https://www.encodeproject.org/files/ENCFF192GGA/@@download/ENCFF192GGA.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF265CIX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF606GLW 1438329 ENCODE Processing Pipeline a60bf5df91d1ad9c425a251acc47ee83 https://www.encodeproject.org/files/ENCFF265CIX/@@download/ENCFF265CIX.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF233LVU bigWig fold change over control ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF603BPO, ENCFF729YXL 332488618 ENCODE Processing Pipeline 8566d4b2ee7206e4d46cdafc3eb4d286 https://www.encodeproject.org/files/ENCFF233LVU/@@download/ENCFF233LVU.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF111CUC bigBed narrowPeak peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF923UEP 11603067 ENCODE Processing Pipeline bb17b083ea8a9ba42427f5664e251f63 https://www.encodeproject.org/files/ENCFF111CUC/@@download/ENCFF111CUC.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF546CLW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF923UEP 1438552 ENCODE Processing Pipeline fdb68839ec5933ca933e19451e53a689 https://www.encodeproject.org/files/ENCFF546CLW/@@download/ENCFF546CLW.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF923UEP bed narrowPeak peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF831XEP, ENCFF925ORI 6294207 ENCODE Processing Pipeline ea1d9627c056b571326eac2aabd517f0 https://www.encodeproject.org/files/ENCFF923UEP/@@download/ENCFF923UEP.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF709BZI bigWig signal p-value ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF831XEP, ENCFF925ORI 714759165 ENCODE Processing Pipeline 97506e0843f50492109f99436957c299 https://www.encodeproject.org/files/ENCFF709BZI/@@download/ENCFF709BZI.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF245MLE bigWig fold change over control ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF831XEP, ENCFF925ORI 333443980 ENCODE Processing Pipeline 225b3cce90420c7c3f738b108176cbdd https://www.encodeproject.org/files/ENCFF245MLE/@@download/ENCFF245MLE.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF974UMT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF546CLW 2514379 ENCODE Processing Pipeline 326971522bbdc6a4007337d767657bfd https://www.encodeproject.org/files/ENCFF974UMT/@@download/ENCFF974UMT.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF992PSP fastq reads ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF814BAR 3306653533 Michael Snyder, Stanford bb1c8294640949bf72aff7b1630ffdba SRA:SRR6213962 https://www.encodeproject.org/files/ENCFF992PSP/@@download/ENCFF992PSP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF095OUI fastq reads ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF672NLI 3187189635 Michael Snyder, Stanford 52755d06fffe90cbbe12ffdcf3a2bed5 SRA:SRR6213961 https://www.encodeproject.org/files/ENCFF095OUI/@@download/ENCFF095OUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF814BAR fastq reads ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF992PSP 3356226507 Michael Snyder, Stanford 0eb9cbfdf038f69552c9978438c8e472 SRA:SRR6213962 https://www.encodeproject.org/files/ENCFF814BAR/@@download/ENCFF814BAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF672NLI fastq reads ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF095OUI 3134629919 Michael Snyder, Stanford 5a03af6122131aa7423b48c824259f7f SRA:SRR6213961 https://www.encodeproject.org/files/ENCFF672NLI/@@download/ENCFF672NLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF899DGW bam unfiltered alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF643CGH, ENCFF814BAR, ENCFF992PSP 7141411808 ENCODE Processing Pipeline a6250eb767bd7fe08cbe77aa711ad912 https://www.encodeproject.org/files/ENCFF899DGW/@@download/ENCFF899DGW.bam GRCh38 released ENCFF675IBF bam unfiltered alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF095OUI, ENCFF643CGH, ENCFF672NLI 6787267836 ENCODE Processing Pipeline 1323f90b67dc364a11029829a58f7e9c https://www.encodeproject.org/files/ENCFF675IBF/@@download/ENCFF675IBF.bam GRCh38 released ENCFF614EKP bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF643CGH, ENCFF814BAR, ENCFF992PSP 5531686265 ENCODE Processing Pipeline 3002972f8e4fddaff63810e3ea1df128 https://www.encodeproject.org/files/ENCFF614EKP/@@download/ENCFF614EKP.bam GRCh38 released ENCFF768MOL bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF095OUI, ENCFF643CGH, ENCFF672NLI 5537560044 ENCODE Processing Pipeline 3f46b556b76a84b4db19f3045e8a1f5c https://www.encodeproject.org/files/ENCFF768MOL/@@download/ENCFF768MOL.bam GRCh38 released ENCFF183OFC bigWig signal p-value ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF768MOL, ENCFF910IKB 1050291844 ENCODE Processing Pipeline 73f36fc0af2ffa497860fd6f3ac4592f https://www.encodeproject.org/files/ENCFF183OFC/@@download/ENCFF183OFC.bigWig GRCh38 released ENCFF696PCA bigWig fold change over control ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF768MOL, ENCFF910IKB 1296928310 ENCODE Processing Pipeline 96a979d17ae8dce00b4a91fd4908aa90 https://www.encodeproject.org/files/ENCFF696PCA/@@download/ENCFF696PCA.bigWig GRCh38 released ENCFF310FKQ bigWig signal p-value ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF227IZS, ENCFF614EKP 1069783566 ENCODE Processing Pipeline 15f34fae1b79bf59c9e0d3ae350b7971 https://www.encodeproject.org/files/ENCFF310FKQ/@@download/ENCFF310FKQ.bigWig GRCh38 released ENCFF089UTW bigWig fold change over control ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF227IZS, ENCFF614EKP, ENCFF768MOL, ENCFF910IKB 2245735537 ENCODE Processing Pipeline 1e4f24b8340d34bd4b8844df5bf7c919 https://www.encodeproject.org/files/ENCFF089UTW/@@download/ENCFF089UTW.bigWig GRCh38 released ENCFF079TPZ bigBed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF077VZQ 13005270 ENCODE Processing Pipeline c35ba56ecf77ecf67c72b3c0b9461855 https://www.encodeproject.org/files/ENCFF079TPZ/@@download/ENCFF079TPZ.bigBed GRCh38 released ENCFF695IZG bigBed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF039YAY 12978294 ENCODE Processing Pipeline b7ca2e7b663b04fd7b53b759aeeeec15 https://www.encodeproject.org/files/ENCFF695IZG/@@download/ENCFF695IZG.bigBed GRCh38 released ENCFF493LXC bed narrowPeak conservative idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF039YAY, ENCFF077VZQ, ENCFF419RSJ, ENCFF789AWR 579968 ENCODE Processing Pipeline 27a5cc9933970f37ce8b9a6edad5a6d4 https://www.encodeproject.org/files/ENCFF493LXC/@@download/ENCFF493LXC.bed.gz GRCh38 released ENCFF052SHD bigWig signal p-value ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF227IZS, ENCFF614EKP, ENCFF768MOL, ENCFF910IKB 1745108014 ENCODE Processing Pipeline d6003d880664b00ab791279d7923271c https://www.encodeproject.org/files/ENCFF052SHD/@@download/ENCFF052SHD.bigWig GRCh38 released ENCFF585RXN bigBed narrowPeak conservative idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF493LXC 1361205 ENCODE Processing Pipeline 91e1209a6da424f839cc65a69c206790 https://www.encodeproject.org/files/ENCFF585RXN/@@download/ENCFF585RXN.bigBed GRCh38 released ENCFF822UUR bigBed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF789AWR 13188282 ENCODE Processing Pipeline b656d511e008407050a3b83903c277b8 https://www.encodeproject.org/files/ENCFF822UUR/@@download/ENCFF822UUR.bigBed GRCh38 released ENCFF789AWR bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF227IZS, ENCFF614EKP 6932173 ENCODE Processing Pipeline a457eb510dc7edb45cbb393eca2c5e24 https://www.encodeproject.org/files/ENCFF789AWR/@@download/ENCFF789AWR.bed.gz GRCh38 released ENCFF039YAY bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF227IZS, ENCFF614EKP, ENCFF768MOL, ENCFF910IKB 7227425 ENCODE Processing Pipeline 12645cd40bf302d84dc882b345934bd9 https://www.encodeproject.org/files/ENCFF039YAY/@@download/ENCFF039YAY.bed.gz GRCh38 released ENCFF758PGF bed narrowPeak optimal idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF039YAY, ENCFF077VZQ, ENCFF419RSJ, ENCFF789AWR 676849 ENCODE Processing Pipeline 428c2a08a1f7872d2fb43284f30c9543 https://www.encodeproject.org/files/ENCFF758PGF/@@download/ENCFF758PGF.bed.gz GRCh38 released ENCFF500NVW bigWig fold change over control ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF227IZS, ENCFF614EKP 1292068806 ENCODE Processing Pipeline 2d8740e8751c7763dd12c0981d91ed98 https://www.encodeproject.org/files/ENCFF500NVW/@@download/ENCFF500NVW.bigWig GRCh38 released ENCFF077VZQ bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF768MOL, ENCFF910IKB 7067904 ENCODE Processing Pipeline 9508e89e7922f7e3e707fdd9fe9d6641 https://www.encodeproject.org/files/ENCFF077VZQ/@@download/ENCFF077VZQ.bed.gz GRCh38 released ENCFF101IQA bigBed narrowPeak optimal idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF758PGF 1538081 ENCODE Processing Pipeline 5cc1b8747333efd22070666c94062b69 https://www.encodeproject.org/files/ENCFF101IQA/@@download/ENCFF101IQA.bigBed GRCh38 released ENCFF184SDI bam unfiltered alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF807MUK, ENCFF814BAR, ENCFF992PSP 7135007861 ENCODE Processing Pipeline b0f095dad733988c18c107e9e8a1d7ee https://www.encodeproject.org/files/ENCFF184SDI/@@download/ENCFF184SDI.bam hg19 released ENCFF267JEC bam unfiltered alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF095OUI, ENCFF672NLI, ENCFF807MUK 6781259300 ENCODE Processing Pipeline f30b89bdbf8ba79e3e8449ce2b7e52e6 https://www.encodeproject.org/files/ENCFF267JEC/@@download/ENCFF267JEC.bam hg19 released ENCFF428MEC bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF095OUI, ENCFF672NLI, ENCFF807MUK 5533896354 ENCODE Processing Pipeline 7cedf3ee026464f6cdf2b83698ad420f https://www.encodeproject.org/files/ENCFF428MEC/@@download/ENCFF428MEC.bam hg19 released ENCFF035ZYM bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF807MUK, ENCFF814BAR, ENCFF992PSP 5527225299 ENCODE Processing Pipeline 5fa368fbc239627ab34372e4fe7e28c7 https://www.encodeproject.org/files/ENCFF035ZYM/@@download/ENCFF035ZYM.bam hg19 released ENCFF976NFH bigWig signal p-value ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF428MEC, ENCFF581ZJL 1340372305 ENCODE Processing Pipeline 0a6cdd142b18ccf887092967053e2f2f https://www.encodeproject.org/files/ENCFF976NFH/@@download/ENCFF976NFH.bigWig hg19 released ENCFF563VQM bigWig signal p-value ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF035ZYM, ENCFF051LWI, ENCFF428MEC, ENCFF581ZJL 2021236594 ENCODE Processing Pipeline 69a39371c22de101303a9d14c5c88103 https://www.encodeproject.org/files/ENCFF563VQM/@@download/ENCFF563VQM.bigWig hg19 released ENCFF614WRB bigWig fold change over control ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF035ZYM, ENCFF051LWI, ENCFF428MEC, ENCFF581ZJL 2263220950 ENCODE Processing Pipeline 37caf2758632e389745f3771843bd8dc https://www.encodeproject.org/files/ENCFF614WRB/@@download/ENCFF614WRB.bigWig hg19 released ENCFF972TKN bigBed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF080VTW 12962875 ENCODE Processing Pipeline 4898170dce95379d53e8e9c99b6dd574 https://www.encodeproject.org/files/ENCFF972TKN/@@download/ENCFF972TKN.bigBed hg19 released ENCFF951GMF bed narrowPeak conservative idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF080VTW, ENCFF084IPF, ENCFF149SPA 577579 ENCODE Processing Pipeline f191e28032d96d602e26f9b24bdd167b https://www.encodeproject.org/files/ENCFF951GMF/@@download/ENCFF951GMF.bed.gz hg19 released ENCFF167PFW bigWig signal p-value ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF035ZYM, ENCFF051LWI 1219330666 ENCODE Processing Pipeline 4b29309bf9b42f0c102d8fd1bbece7c8 https://www.encodeproject.org/files/ENCFF167PFW/@@download/ENCFF167PFW.bigWig hg19 released ENCFF149SPA bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF035ZYM, ENCFF051LWI 6948836 ENCODE Processing Pipeline 1c1779bba1510798d565851ba88f06cf https://www.encodeproject.org/files/ENCFF149SPA/@@download/ENCFF149SPA.bed.gz hg19 released ENCFF869LLT bigBed narrowPeak conservative idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF951GMF 1353025 ENCODE Processing Pipeline 896d3e057d5489cb3fad0a62fd830d60 https://www.encodeproject.org/files/ENCFF869LLT/@@download/ENCFF869LLT.bigBed hg19 released ENCFF685VEK bigBed narrowPeak optimal idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF996CUX 1537030 ENCODE Processing Pipeline 7f1facfc5ac8dce7456343576cf4657f https://www.encodeproject.org/files/ENCFF685VEK/@@download/ENCFF685VEK.bigBed hg19 released ENCFF222XGX bigWig fold change over control ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF428MEC, ENCFF581ZJL 1283099387 ENCODE Processing Pipeline 72f65bdbaa287242f843ee17ae2a610f https://www.encodeproject.org/files/ENCFF222XGX/@@download/ENCFF222XGX.bigWig hg19 released ENCFF341LNG bigWig fold change over control ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF035ZYM, ENCFF051LWI 1251051901 ENCODE Processing Pipeline 201b5cd3a0f1bb69696d1f18aadd2503 https://www.encodeproject.org/files/ENCFF341LNG/@@download/ENCFF341LNG.bigWig hg19 released ENCFF080VTW bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF428MEC, ENCFF581ZJL 7037676 ENCODE Processing Pipeline 505f5c7a83b186acdf5416a5758462b7 https://www.encodeproject.org/files/ENCFF080VTW/@@download/ENCFF080VTW.bed.gz hg19 released ENCFF084IPF bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF035ZYM, ENCFF051LWI, ENCFF428MEC, ENCFF581ZJL 7220662 ENCODE Processing Pipeline a31b3478993be6c163f55a08be7b82d1 https://www.encodeproject.org/files/ENCFF084IPF/@@download/ENCFF084IPF.bed.gz hg19 released ENCFF840XGX bigBed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF149SPA 13191872 ENCODE Processing Pipeline e42c91143203b9e0e98655b9161009cf https://www.encodeproject.org/files/ENCFF840XGX/@@download/ENCFF840XGX.bigBed hg19 released ENCFF997VAF bigBed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF084IPF 12962267 ENCODE Processing Pipeline 7708df1d330d6406abf8d1a6417ad586 https://www.encodeproject.org/files/ENCFF997VAF/@@download/ENCFF997VAF.bigBed hg19 released ENCFF996CUX bed narrowPeak optimal idr thresholded peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF080VTW, ENCFF084IPF, ENCFF149SPA 680484 ENCODE Processing Pipeline 9bb7168ee1677082803a055cbec21cc4 https://www.encodeproject.org/files/ENCFF996CUX/@@download/ENCFF996CUX.bed.gz hg19 released ENCFF219XKY fastq reads ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 1 101 paired-ended 1 ENCFF434TPG 3445000771 Michael Snyder, Stanford 4bba2ce92fbaf7e47e2d294f9ac5ec1a SRA:SRR6212911 https://www.encodeproject.org/files/ENCFF219XKY/@@download/ENCFF219XKY.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF434TPG fastq reads ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 1 101 paired-ended 2 ENCFF219XKY 3580702718 Michael Snyder, Stanford 0a1a9f5da6c6b0fcef01b71b8e9aaad7 SRA:SRR6212911 https://www.encodeproject.org/files/ENCFF434TPG/@@download/ENCFF434TPG.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF145MJZ bam unfiltered alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF219XKY, ENCFF434TPG, ENCFF643CGH 6702784759 ENCODE Processing Pipeline eae4df3e4350853b2bb1de93c7e24895 https://www.encodeproject.org/files/ENCFF145MJZ/@@download/ENCFF145MJZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF981LQE bam unfiltered alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF219XKY, ENCFF434TPG, ENCFF807MUK 6693550387 ENCODE Processing Pipeline 0e39021d3125ba99f78e7619fa3fb013 https://www.encodeproject.org/files/ENCFF981LQE/@@download/ENCFF981LQE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF241VRG bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF219XKY, ENCFF434TPG, ENCFF643CGH 5680499686 ENCODE Processing Pipeline a34566b4cb1da0999bb97297e2ee4647 https://www.encodeproject.org/files/ENCFF241VRG/@@download/ENCFF241VRG.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF220ZJP bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF219XKY, ENCFF434TPG, ENCFF807MUK 5676973854 ENCODE Processing Pipeline 3c79552042f68f3a809430342c4355d9 https://www.encodeproject.org/files/ENCFF220ZJP/@@download/ENCFF220ZJP.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF113AVH bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 1551735288 ENCODE Processing Pipeline f3a71e8298216918e2e2fd3ef60eee06 https://www.encodeproject.org/files/ENCFF113AVH/@@download/ENCFF113AVH.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF761GYL bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 1827570514 ENCODE Processing Pipeline a50d2868ded1a37a8e90b3bac11e5cce https://www.encodeproject.org/files/ENCFF761GYL/@@download/ENCFF761GYL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF475MVE bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 7258645 ENCODE Processing Pipeline 74c8b5289db24f8647fa9d14f3b842ba https://www.encodeproject.org/files/ENCFF475MVE/@@download/ENCFF475MVE.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF354POH bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF475MVE 12922030 ENCODE Processing Pipeline d132382939b12472fee41a7cd3276c58 https://www.encodeproject.org/files/ENCFF354POH/@@download/ENCFF354POH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF095AFX fastq reads ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 1 101 paired-ended 1 ENCFF173GSZ 4948278902 Michael Snyder, Stanford 4d7f503c699336c8bd7247869caa0dd4 SRA:SRR6212910 https://www.encodeproject.org/files/ENCFF095AFX/@@download/ENCFF095AFX.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF173GSZ fastq reads ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 1 101 paired-ended 2 ENCFF095AFX 5410398573 Michael Snyder, Stanford 4b9da04ae6cb6a4fc426944863072a0f SRA:SRR6212910 https://www.encodeproject.org/files/ENCFF173GSZ/@@download/ENCFF173GSZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF303NQL bam unfiltered alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF095AFX, ENCFF173GSZ, ENCFF807MUK 9124936131 ENCODE Processing Pipeline e6a2f635bccc3b57e50db234602f70e0 https://www.encodeproject.org/files/ENCFF303NQL/@@download/ENCFF303NQL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF502RYW bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF095AFX, ENCFF173GSZ, ENCFF807MUK 7089323918 ENCODE Processing Pipeline 4be2787e7ca6053811bb9d7d8ed4c0bf https://www.encodeproject.org/files/ENCFF502RYW/@@download/ENCFF502RYW.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF410UHW bam unfiltered alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF095AFX, ENCFF173GSZ, ENCFF643CGH 9132013149 ENCODE Processing Pipeline 0ae66b6abaa46de78c4d35a792de6bfd https://www.encodeproject.org/files/ENCFF410UHW/@@download/ENCFF410UHW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF066ZSK bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF095AFX, ENCFF173GSZ, ENCFF643CGH 7094526339 ENCODE Processing Pipeline 745ad98736aeae98d57ea491debd99ea https://www.encodeproject.org/files/ENCFF066ZSK/@@download/ENCFF066ZSK.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF045EPD bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF066ZSK, ENCFF810LLR 1889657144 ENCODE Processing Pipeline d1777a9164abde1e833b4751123bd0c3 https://www.encodeproject.org/files/ENCFF045EPD/@@download/ENCFF045EPD.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF170EPG bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 1557749912 ENCODE Processing Pipeline 8271207ef7e4152c3b77a6dadec5013c https://www.encodeproject.org/files/ENCFF170EPG/@@download/ENCFF170EPG.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF287OMR bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF753LSJ 12881558 ENCODE Processing Pipeline 94c270a2c7a1a3c35dd2c6e85be43e4b https://www.encodeproject.org/files/ENCFF287OMR/@@download/ENCFF287OMR.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF003KQY bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF182WHU, ENCFF502RYW 7233440 ENCODE Processing Pipeline 8d7e4a7a5043308e72ad9843ca3aba22 https://www.encodeproject.org/files/ENCFF003KQY/@@download/ENCFF003KQY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF811IJD bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF003KQY 12845143 ENCODE Processing Pipeline 1468ed1c14bfd107e91cc380dfbb0fe8 https://www.encodeproject.org/files/ENCFF811IJD/@@download/ENCFF811IJD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF752TCU bigBed narrowPeak optimal idr thresholded peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF668ZRO 1583816 ENCODE Processing Pipeline ee279a1499a74926c947fa8ecfefe320 https://www.encodeproject.org/files/ENCFF752TCU/@@download/ENCFF752TCU.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF804AVH bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF182WHU, ENCFF502RYW 1859982029 ENCODE Processing Pipeline 26438e734e2fd2555d1159d09c87b8f2 https://www.encodeproject.org/files/ENCFF804AVH/@@download/ENCFF804AVH.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF868VFY bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF066ZSK, ENCFF241VRG, ENCFF810LLR 1830329054 ENCODE Processing Pipeline 553640adf423d685e65255eaada56d82 https://www.encodeproject.org/files/ENCFF868VFY/@@download/ENCFF868VFY.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF461OYQ bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 1830454852 ENCODE Processing Pipeline 9e17835fdc8f8be7b537244217fd4bd9 https://www.encodeproject.org/files/ENCFF461OYQ/@@download/ENCFF461OYQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF005NYL bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 7203704 ENCODE Processing Pipeline a53d0f15215b278e8664cf25fcd06234 https://www.encodeproject.org/files/ENCFF005NYL/@@download/ENCFF005NYL.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF322GQO bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF066ZSK, ENCFF241VRG, ENCFF810LLR 7316388 ENCODE Processing Pipeline 7e6e9d03f70cfbe5605a0003b62cdfd5 https://www.encodeproject.org/files/ENCFF322GQO/@@download/ENCFF322GQO.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF825EKV bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF621WQW 12859411 ENCODE Processing Pipeline ddb90f97e17fdc46d9ce7bd2370b0936 https://www.encodeproject.org/files/ENCFF825EKV/@@download/ENCFF825EKV.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF668ZRO bed narrowPeak optimal idr thresholded peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF322GQO, ENCFF419RSJ, ENCFF621WQW, ENCFF753LSJ 646619 ENCODE Processing Pipeline 889c1a87693d42ce295469ec3408d497 https://www.encodeproject.org/files/ENCFF668ZRO/@@download/ENCFF668ZRO.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF919LYX bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF182WHU, ENCFF502RYW 2095447763 ENCODE Processing Pipeline 0e1f3563da6bcb0c6e7cb8c6fb3d4938 https://www.encodeproject.org/files/ENCFF919LYX/@@download/ENCFF919LYX.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF621WQW bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF066ZSK, ENCFF810LLR 7238909 ENCODE Processing Pipeline ab4f9166a76d129eb8d9c95f0d6ef1e3 https://www.encodeproject.org/files/ENCFF621WQW/@@download/ENCFF621WQW.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF734TIT bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF322GQO 12851999 ENCODE Processing Pipeline 9b0b23ae95f6bbff443828f2712186ff https://www.encodeproject.org/files/ENCFF734TIT/@@download/ENCFF734TIT.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF917LLA bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF066ZSK, ENCFF810LLR 2126735234 ENCODE Processing Pipeline df65923bb119058c93cdcf5f35038e58 https://www.encodeproject.org/files/ENCFF917LLA/@@download/ENCFF917LLA.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF686HOP bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF066ZSK, ENCFF241VRG, ENCFF810LLR 2654085637 ENCODE Processing Pipeline 3aa0b61c16b096d33e72892fdee87f58 https://www.encodeproject.org/files/ENCFF686HOP/@@download/ENCFF686HOP.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF753LSJ bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF241VRG, ENCFF810LLR 7210040 ENCODE Processing Pipeline 15ad94a042b0f123c3b6eeaffb3877a8 https://www.encodeproject.org/files/ENCFF753LSJ/@@download/ENCFF753LSJ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF013SKW bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF182WHU, ENCFF220ZJP, ENCFF502RYW 7309311 ENCODE Processing Pipeline ba8c5493ba0b67b791f86d8d2edd7a9e https://www.encodeproject.org/files/ENCFF013SKW/@@download/ENCFF013SKW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF607LQB bigBed narrowPeak optimal idr thresholded peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF462ZZD 1576810 ENCODE Processing Pipeline 2e726336081f027f8f3dbbf465e869e1 https://www.encodeproject.org/files/ENCFF607LQB/@@download/ENCFF607LQB.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF398HNE bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF241VRG, ENCFF810LLR 1538901054 ENCODE Processing Pipeline 690697b3d8950d412b743eb6a6aaeecc https://www.encodeproject.org/files/ENCFF398HNE/@@download/ENCFF398HNE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF687JLF bigWig signal p-value ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF182WHU, ENCFF220ZJP, ENCFF502RYW 1854925147 ENCODE Processing Pipeline 9af8c3d87272980339cf59e92f18f168 https://www.encodeproject.org/files/ENCFF687JLF/@@download/ENCFF687JLF.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF481YWZ bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF241VRG, ENCFF810LLR 1816469519 ENCODE Processing Pipeline ebf8cfec3053851d9d735b167a93e59c https://www.encodeproject.org/files/ENCFF481YWZ/@@download/ENCFF481YWZ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF469TQG bigWig fold change over control ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF182WHU, ENCFF220ZJP, ENCFF502RYW 2679343440 ENCODE Processing Pipeline 2141e3d5882d7b16289c749bd8c44b88 https://www.encodeproject.org/files/ENCFF469TQG/@@download/ENCFF469TQG.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF210DPI bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF005NYL 12866752 ENCODE Processing Pipeline 6a986b5c2ee499efc202983b1e35f2e4 https://www.encodeproject.org/files/ENCFF210DPI/@@download/ENCFF210DPI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF058SFM bigBed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF013SKW 12840243 ENCODE Processing Pipeline 94fb1a0c87cca559ffe8e70b51facecd https://www.encodeproject.org/files/ENCFF058SFM/@@download/ENCFF058SFM.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF462ZZD bed narrowPeak optimal idr thresholded peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF001TDO, ENCFF003KQY, ENCFF005NYL, ENCFF013SKW 645376 ENCODE Processing Pipeline fe7772dff49340b12a501e61123da918 https://www.encodeproject.org/files/ENCFF462ZZD/@@download/ENCFF462ZZD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF172TVB bam unfiltered alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EMJ, ENCFF002EML, ENCFF807MUK 6792672110 ENCODE Processing Pipeline ddda830b20c9d064d434b8fcc3781ba8 https://www.encodeproject.org/files/ENCFF172TVB/@@download/ENCFF172TVB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF591RZE bam unfiltered alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMM, ENCFF002EMN, ENCFF807MUK 7566884168 ENCODE Processing Pipeline 9c6f302d7609db6cb4de9f6fcc352a13 https://www.encodeproject.org/files/ENCFF591RZE/@@download/ENCFF591RZE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF506TQC bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 1075724804 ENCODE Processing Pipeline e5881fd6d7772302188cf561788fcea5 https://www.encodeproject.org/files/ENCFF506TQC/@@download/ENCFF506TQC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF857LKP bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 1215178139 ENCODE Processing Pipeline 2fdfe2cb535642ee5dcbd3600af10d2f https://www.encodeproject.org/files/ENCFF857LKP/@@download/ENCFF857LKP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF002EMJ fastq reads ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EML 3216072548 Michael Snyder, Stanford 47597f6dc70d89b3099abf7d0b6d83b5 SRA:SRR5111887 https://www.encodeproject.org/files/ENCFF002EMJ/@@download/ENCFF002EMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF002EML fastq reads ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EMJ 3248967034 Michael Snyder, Stanford fdc525528ca02bbc14d5935a157e2834 SRA:SRR5111887 https://www.encodeproject.org/files/ENCFF002EML/@@download/ENCFF002EML.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF002EMM fastq reads ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EMN 3476692026 Michael Snyder, Stanford ef7ca421ec7f62932a4acc7e21a1fc31 SRA:SRR5111886 https://www.encodeproject.org/files/ENCFF002EMM/@@download/ENCFF002EMM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF002EMN fastq reads ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EMM 3472744064 Michael Snyder, Stanford 55db292b7a7ebd58d5a233e787efd3f2 SRA:SRR5111886 https://www.encodeproject.org/files/ENCFF002EMN/@@download/ENCFF002EMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF440FHJ bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF121NJR, ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 2168544214 ENCODE Processing Pipeline babe8e275124455d812fe1025f028831 https://www.encodeproject.org/files/ENCFF440FHJ/@@download/ENCFF440FHJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF637IYN bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF121NJR, ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 2282383769 ENCODE Processing Pipeline cc2d311252680c53440f8a12e5f15778 https://www.encodeproject.org/files/ENCFF637IYN/@@download/ENCFF637IYN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF757QKH bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 6091251 ENCODE Processing Pipeline 055a53216518c26f07711740a76aa0f8 https://www.encodeproject.org/files/ENCFF757QKH/@@download/ENCFF757QKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF945PVC bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 6510249 ENCODE Processing Pipeline 1d98684a2a27013c7e3d8be50a2c0f58 https://www.encodeproject.org/files/ENCFF945PVC/@@download/ENCFF945PVC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF373ECD bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF121NJR, ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 7173538 ENCODE Processing Pipeline 3f8030acb0f7aebd2162fa81d7a3457d https://www.encodeproject.org/files/ENCFF373ECD/@@download/ENCFF373ECD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF806RDG bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF757QKH 11119895 ENCODE Processing Pipeline 1482ea154cd6699ee39d67c5fbff7240 https://www.encodeproject.org/files/ENCFF806RDG/@@download/ENCFF806RDG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF222XUP bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF945PVC 11279010 ENCODE Processing Pipeline 8f7c144e21769bee053cdea28827332f https://www.encodeproject.org/files/ENCFF222XUP/@@download/ENCFF222XUP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF395XEG bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF373ECD 11073548 ENCODE Processing Pipeline 643520ceeaa3b46e9afea3f7370ce2b0 https://www.encodeproject.org/files/ENCFF395XEG/@@download/ENCFF395XEG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF969WFT bed narrowPeak conservative idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF373ECD, ENCFF757QKH, ENCFF945PVC 11819 ENCODE Processing Pipeline 070a6fa1efb21e84cf7879ca0ada91c1 https://www.encodeproject.org/files/ENCFF969WFT/@@download/ENCFF969WFT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF776GNG bigBed narrowPeak conservative idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF969WFT 92096 ENCODE Processing Pipeline 6b89cd09d8aa01a23ca8c668835dd571 https://www.encodeproject.org/files/ENCFF776GNG/@@download/ENCFF776GNG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF849UJR bed narrowPeak optimal idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF373ECD, ENCFF757QKH, ENCFF945PVC 15537 ENCODE Processing Pipeline 18ce94b154e37d7126b3dabeec5e01e6 https://www.encodeproject.org/files/ENCFF849UJR/@@download/ENCFF849UJR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF839RHL bigBed narrowPeak optimal idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF849UJR 89125 ENCODE Processing Pipeline 076f55ba431767156ac688499b837503 https://www.encodeproject.org/files/ENCFF839RHL/@@download/ENCFF839RHL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF121NJR bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EMJ, ENCFF002EML, ENCFF807MUK 4856506824 ENCODE Processing Pipeline a62b3bd9ecc8240e3dc8a012b8004031 https://www.encodeproject.org/files/ENCFF121NJR/@@download/ENCFF121NJR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF248LPB bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMM, ENCFF002EMN, ENCFF807MUK 6621512562 ENCODE Processing Pipeline 57e7d54fdc6f986b0fe9583229eda718 https://www.encodeproject.org/files/ENCFF248LPB/@@download/ENCFF248LPB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF836HGG bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 1070292330 ENCODE Processing Pipeline 9994ed6b013cda495b0048dfbc289e4a https://www.encodeproject.org/files/ENCFF836HGG/@@download/ENCFF836HGG.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF749UAB bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 1635293830 ENCODE Processing Pipeline 7bdf252fb92eec2e7eeeb818bc214c41 https://www.encodeproject.org/files/ENCFF749UAB/@@download/ENCFF749UAB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF772SRM bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF121NJR, ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 2134966289 ENCODE Processing Pipeline 801be21791dc17efad84cc563c20c5d3 https://www.encodeproject.org/files/ENCFF772SRM/@@download/ENCFF772SRM.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF457JHC bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 1209931965 ENCODE Processing Pipeline 179d7b7f42fb0d1ade8db924b2227f7c https://www.encodeproject.org/files/ENCFF457JHC/@@download/ENCFF457JHC.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF121NKS bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 1789927548 ENCODE Processing Pipeline 7b92e961da10d8f0af11b5feb44f6292 https://www.encodeproject.org/files/ENCFF121NKS/@@download/ENCFF121NKS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF157EWS bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF121NJR, ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 2246323168 ENCODE Processing Pipeline ac127441aa6fc06fc980af0ee7ee9ed3 https://www.encodeproject.org/files/ENCFF157EWS/@@download/ENCFF157EWS.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF901URI bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF121NJR, ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 7227934 ENCODE Processing Pipeline ea3df6dfd2ff34e211797548551e569c https://www.encodeproject.org/files/ENCFF901URI/@@download/ENCFF901URI.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF679OFK bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF248LPB, ENCFF321TUP, ENCFF806YIH 6638429 ENCODE Processing Pipeline 086b51b1030582c8907ec07690e6aa33 https://www.encodeproject.org/files/ENCFF679OFK/@@download/ENCFF679OFK.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF681JGU bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 6297209 ENCODE Processing Pipeline 2315bfbb3f3eff54642a7e9fdfb40efe https://www.encodeproject.org/files/ENCFF681JGU/@@download/ENCFF681JGU.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF467SVP bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF679OFK 11282839 ENCODE Processing Pipeline 965d96f93d43b38d31520e6d3fd03844 https://www.encodeproject.org/files/ENCFF467SVP/@@download/ENCFF467SVP.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF049AHP bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF681JGU 11131399 ENCODE Processing Pipeline 5a3043f1632ca4bf297388848e471059 https://www.encodeproject.org/files/ENCFF049AHP/@@download/ENCFF049AHP.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF783MWV bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF901URI 11073043 ENCODE Processing Pipeline 42af79583eb8cb3ce79332bd8b50bebe https://www.encodeproject.org/files/ENCFF783MWV/@@download/ENCFF783MWV.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF411FPM bam unfiltered alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EMJ, ENCFF002EML, ENCFF643CGH 6802240709 ENCODE Processing Pipeline e6121a52667e72aee0198a07ed352ab2 https://www.encodeproject.org/files/ENCFF411FPM/@@download/ENCFF411FPM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF321QNV bam unfiltered alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMM, ENCFF002EMN, ENCFF643CGH 7581560868 ENCODE Processing Pipeline 76aef072895ef9c6b14cf0db864f48b8 https://www.encodeproject.org/files/ENCFF321QNV/@@download/ENCFF321QNV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF151NRC bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EMJ, ENCFF002EML, ENCFF643CGH 4863011266 ENCODE Processing Pipeline 3b4bbc175f18ccee60a44a403b2e5d67 https://www.encodeproject.org/files/ENCFF151NRC/@@download/ENCFF151NRC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF374OTD bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMM, ENCFF002EMN, ENCFF643CGH 6631121817 ENCODE Processing Pipeline 28739b2f7ae149c9c3149961d9a97b63 https://www.encodeproject.org/files/ENCFF374OTD/@@download/ENCFF374OTD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF773KRI bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF151NRC, ENCFF189KJV 1157658202 ENCODE Processing Pipeline 73a0144062ab36f631e01fd69be596b2 https://www.encodeproject.org/files/ENCFF773KRI/@@download/ENCFF773KRI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF080KBD bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF189KJV, ENCFF374OTD, ENCFF419UIG 1387283628 ENCODE Processing Pipeline 07b42a6f4fe8393e5969f2202c1295f4 https://www.encodeproject.org/files/ENCFF080KBD/@@download/ENCFF080KBD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF474AJP bigWig signal p-value ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF151NRC, ENCFF189KJV, ENCFF374OTD, ENCFF419UIG 2141185047 ENCODE Processing Pipeline 6e761b31fda04509ce43dc5a193162d9 https://www.encodeproject.org/files/ENCFF474AJP/@@download/ENCFF474AJP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF063VTN bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF151NRC, ENCFF189KJV 1212397447 ENCODE Processing Pipeline a6b639cb905c76ddf5a64e7104713288 https://www.encodeproject.org/files/ENCFF063VTN/@@download/ENCFF063VTN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF166UFQ bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF189KJV, ENCFF374OTD, ENCFF419UIG 1793697072 ENCODE Processing Pipeline 19e8af1e91acc7be64c364b3d7f3cc50 https://www.encodeproject.org/files/ENCFF166UFQ/@@download/ENCFF166UFQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF263SSR bigWig fold change over control ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF151NRC, ENCFF189KJV, ENCFF374OTD, ENCFF419UIG 2250604867 ENCODE Processing Pipeline aa97073014f60ecc504a1d47f1b3b994 https://www.encodeproject.org/files/ENCFF263SSR/@@download/ENCFF263SSR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF094FVT bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF151NRC, ENCFF189KJV 6094339 ENCODE Processing Pipeline 81ed65d39e1d59bfdb00ece821582bc3 https://www.encodeproject.org/files/ENCFF094FVT/@@download/ENCFF094FVT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF779OOQ bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF189KJV, ENCFF374OTD, ENCFF419UIG 6515472 ENCODE Processing Pipeline fab6ede8d1266696f0e6f6b8ed993b86 https://www.encodeproject.org/files/ENCFF779OOQ/@@download/ENCFF779OOQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF231OVB bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF151NRC, ENCFF189KJV, ENCFF374OTD, ENCFF419UIG 7181833 ENCODE Processing Pipeline 479b5d88343ea555356263707a23d557 https://www.encodeproject.org/files/ENCFF231OVB/@@download/ENCFF231OVB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF715VJH bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF094FVT 11135140 ENCODE Processing Pipeline 3bd61e9b7b4e662ec91e2721dc56228f https://www.encodeproject.org/files/ENCFF715VJH/@@download/ENCFF715VJH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF860IBF bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF779OOQ 11299969 ENCODE Processing Pipeline 6e63282b3088d39074560431b0e467e4 https://www.encodeproject.org/files/ENCFF860IBF/@@download/ENCFF860IBF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF029AAC bigBed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF231OVB 11087305 ENCODE Processing Pipeline 6d03380d9a41a0c87f4a3ff7fef0ace9 https://www.encodeproject.org/files/ENCFF029AAC/@@download/ENCFF029AAC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF496COS bed narrowPeak conservative idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF094FVT, ENCFF231OVB, ENCFF419RSJ, ENCFF779OOQ 11933 ENCODE Processing Pipeline 4ab02b79698aa0e80d66384f570dff20 https://www.encodeproject.org/files/ENCFF496COS/@@download/ENCFF496COS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF483YCC bed narrowPeak optimal idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF094FVT, ENCFF231OVB, ENCFF419RSJ, ENCFF779OOQ 16413 ENCODE Processing Pipeline ef5e26683f8f9dada701164798b392a4 https://www.encodeproject.org/files/ENCFF483YCC/@@download/ENCFF483YCC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF882ZDJ bigBed narrowPeak conservative idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF496COS 93314 ENCODE Processing Pipeline f1ec9412907cd77a78256c87458a7a85 https://www.encodeproject.org/files/ENCFF882ZDJ/@@download/ENCFF882ZDJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF429BQL bigBed narrowPeak optimal idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF483YCC 92333 ENCODE Processing Pipeline 6ef5229cb632f524ccc7ff129e8ec4e6 https://www.encodeproject.org/files/ENCFF429BQL/@@download/ENCFF429BQL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF351ZRA bed narrowPeak conservative idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF679OFK, ENCFF681JGU, ENCFF901URI 10684 ENCODE Processing Pipeline 771c8399f5ad20f2507648186a61673c https://www.encodeproject.org/files/ENCFF351ZRA/@@download/ENCFF351ZRA.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF434VPO bigBed narrowPeak conservative idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF351ZRA 79449 ENCODE Processing Pipeline f9d82a60efb34825a6b5f4603454b0cb https://www.encodeproject.org/files/ENCFF434VPO/@@download/ENCFF434VPO.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF860MVU bed narrowPeak optimal idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF679OFK, ENCFF681JGU, ENCFF901URI 16737 ENCODE Processing Pipeline c454af9c000fbbe591ead3ae39cb1f8d https://www.encodeproject.org/files/ENCFF860MVU/@@download/ENCFF860MVU.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF260TAG bigBed narrowPeak optimal idr thresholded peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF860MVU 79811 ENCODE Processing Pipeline 7e2d2ae8887378f57a5d224e73067b17 https://www.encodeproject.org/files/ENCFF260TAG/@@download/ENCFF260TAG.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF286CNN bam unfiltered alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF645TLG, ENCFF791NQC, ENCFF807MUK 5879106524 ENCODE Processing Pipeline de4f53be4c26b7f3ccd8bb8c96ef05e2 https://www.encodeproject.org/files/ENCFF286CNN/@@download/ENCFF286CNN.bam hg19 released borderline replicate concordance ENCFF715PIM bam unfiltered alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF404XXI, ENCFF580UJW, ENCFF807MUK 4634148709 ENCODE Processing Pipeline 559b00c89f146e232f8cc18a0e020bf4 https://www.encodeproject.org/files/ENCFF715PIM/@@download/ENCFF715PIM.bam hg19 released borderline replicate concordance ENCFF791NQC fastq reads ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF645TLG 2671231867 Michael Snyder, Stanford 056416455076168153e0034d4c064bf1 SRA:SRR5111706 https://www.encodeproject.org/files/ENCFF791NQC/@@download/ENCFF791NQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF645TLG fastq reads ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF791NQC 2716955169 Michael Snyder, Stanford 69117a4578f975872f516e49a5deea22 SRA:SRR5111706 https://www.encodeproject.org/files/ENCFF645TLG/@@download/ENCFF645TLG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF580UJW fastq reads ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF404XXI 2115075568 Michael Snyder, Stanford 4dd5c02bf54f13a4ad1fa4f6c95ba30e SRA:SRR5111705 https://www.encodeproject.org/files/ENCFF580UJW/@@download/ENCFF580UJW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF404XXI fastq reads ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF580UJW 2075828524 Michael Snyder, Stanford 2104a89d85a635dddcd1bf2395c8a9c2 SRA:SRR5111705 https://www.encodeproject.org/files/ENCFF404XXI/@@download/ENCFF404XXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF574FWU bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF404XXI, ENCFF580UJW, ENCFF807MUK 3818262164 ENCODE Processing Pipeline a7f6679594b7972e67be46023e3c9112 https://www.encodeproject.org/files/ENCFF574FWU/@@download/ENCFF574FWU.bam hg19 released borderline replicate concordance ENCFF957ELP bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF645TLG, ENCFF791NQC, ENCFF807MUK 5065337852 ENCODE Processing Pipeline e709232dd06472f139cae087bf6f4657 https://www.encodeproject.org/files/ENCFF957ELP/@@download/ENCFF957ELP.bam hg19 released borderline replicate concordance ENCFF598SXW bigWig signal p-value ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF957ELP 1114166158 ENCODE Processing Pipeline a99011d2ca1479fee9ab15240d786ab8 https://www.encodeproject.org/files/ENCFF598SXW/@@download/ENCFF598SXW.bigWig hg19 released borderline replicate concordance ENCFF870VRG bigWig signal p-value ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF574FWU, ENCFF583FAG 801945854 ENCODE Processing Pipeline ac4baedb59c3ee0c4c8026859c57c96e https://www.encodeproject.org/files/ENCFF870VRG/@@download/ENCFF870VRG.bigWig hg19 released borderline replicate concordance ENCFF847OPN bigWig signal p-value ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF574FWU, ENCFF583FAG, ENCFF957ELP 1746618146 ENCODE Processing Pipeline 92c5a3ccf11133c63354008776de9743 https://www.encodeproject.org/files/ENCFF847OPN/@@download/ENCFF847OPN.bigWig hg19 released borderline replicate concordance ENCFF754UWS bigWig fold change over control ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF957ELP 1254831869 ENCODE Processing Pipeline 0234e91dc101eb00207fb37fc0b41747 https://www.encodeproject.org/files/ENCFF754UWS/@@download/ENCFF754UWS.bigWig hg19 released borderline replicate concordance ENCFF996KLN bigWig fold change over control ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF574FWU, ENCFF583FAG 982885525 ENCODE Processing Pipeline ba306f941403e62d95f4073d98949dc0 https://www.encodeproject.org/files/ENCFF996KLN/@@download/ENCFF996KLN.bigWig hg19 released borderline replicate concordance ENCFF500PCI bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF957ELP 6184115 ENCODE Processing Pipeline 9dfe921383062e98cf5d937a114b8b4d https://www.encodeproject.org/files/ENCFF500PCI/@@download/ENCFF500PCI.bed.gz hg19 released borderline replicate concordance ENCFF462LEE bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF574FWU, ENCFF583FAG, ENCFF957ELP 6994675 ENCODE Processing Pipeline edcb2b1001571ef50d230d0f0fb1993f https://www.encodeproject.org/files/ENCFF462LEE/@@download/ENCFF462LEE.bed.gz hg19 released borderline replicate concordance ENCFF567YFN bigWig fold change over control ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF574FWU, ENCFF583FAG, ENCFF957ELP 2034249427 ENCODE Processing Pipeline 8270eeddfdf8a6906340756a1820e832 https://www.encodeproject.org/files/ENCFF567YFN/@@download/ENCFF567YFN.bigWig hg19 released borderline replicate concordance ENCFF610BOW bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF574FWU, ENCFF583FAG 5680847 ENCODE Processing Pipeline be639b0e150d2dbf42e3daa91726ddab https://www.encodeproject.org/files/ENCFF610BOW/@@download/ENCFF610BOW.bed.gz hg19 released borderline replicate concordance ENCFF954BLC bigBed narrowPeak conservative idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF552ILF 85147 ENCODE Processing Pipeline 13a29d7d3bb6da89260f77d62193e00c https://www.encodeproject.org/files/ENCFF954BLC/@@download/ENCFF954BLC.bigBed hg19 released borderline replicate concordance ENCFF671BJT bed narrowPeak optimal idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF462LEE, ENCFF500PCI, ENCFF610BOW 38217 ENCODE Processing Pipeline ad302231cc0be974b9752e50205047a1 https://www.encodeproject.org/files/ENCFF671BJT/@@download/ENCFF671BJT.bed.gz hg19 released borderline replicate concordance ENCFF469ZKX bigBed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF610BOW 11244573 ENCODE Processing Pipeline 6d61d4b5de85d79202305cf82f825e9b https://www.encodeproject.org/files/ENCFF469ZKX/@@download/ENCFF469ZKX.bigBed hg19 released borderline replicate concordance ENCFF579KZP bigBed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF500PCI 11155910 ENCODE Processing Pipeline ee6b2aba8b48ff80211a55c563179e86 https://www.encodeproject.org/files/ENCFF579KZP/@@download/ENCFF579KZP.bigBed hg19 released borderline replicate concordance ENCFF934JEQ bigBed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF462LEE 11152385 ENCODE Processing Pipeline 59bf45cc534f54a4ce4686581dce3375 https://www.encodeproject.org/files/ENCFF934JEQ/@@download/ENCFF934JEQ.bigBed hg19 released borderline replicate concordance ENCFF470KFC bigBed narrowPeak optimal idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF671BJT 133518 ENCODE Processing Pipeline 1b46d4e2286bb4667cda5f1746c57eac https://www.encodeproject.org/files/ENCFF470KFC/@@download/ENCFF470KFC.bigBed hg19 released borderline replicate concordance ENCFF552ILF bed narrowPeak conservative idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF462LEE, ENCFF500PCI, ENCFF610BOW 18352 ENCODE Processing Pipeline 4e9c4caade3f20a4f32d46baf28af79c https://www.encodeproject.org/files/ENCFF552ILF/@@download/ENCFF552ILF.bed.gz hg19 released borderline replicate concordance ENCFF508WTA bam unfiltered alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF404XXI, ENCFF580UJW, ENCFF643CGH 4642624600 ENCODE Processing Pipeline aefd7dbe0d1cc5d2b21e265fbd3c3187 https://www.encodeproject.org/files/ENCFF508WTA/@@download/ENCFF508WTA.bam GRCh38 released borderline replicate concordance ENCFF958MLY bam unfiltered alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF645TLG, ENCFF791NQC 5890543147 ENCODE Processing Pipeline 3e4dda3c585b2750af4f0e115ef65b4b https://www.encodeproject.org/files/ENCFF958MLY/@@download/ENCFF958MLY.bam GRCh38 released borderline replicate concordance ENCFF060DER bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF404XXI, ENCFF580UJW, ENCFF643CGH 3824994853 ENCODE Processing Pipeline 89f402431f4ba4d8dfd92f840292705e https://www.encodeproject.org/files/ENCFF060DER/@@download/ENCFF060DER.bam GRCh38 released borderline replicate concordance ENCFF357QWW bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF645TLG, ENCFF791NQC 5073955281 ENCODE Processing Pipeline 3b34f89de2d7e9e4aa3e63a0d454c162 https://www.encodeproject.org/files/ENCFF357QWW/@@download/ENCFF357QWW.bam GRCh38 released borderline replicate concordance ENCFF531NJC bigWig signal p-value ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF060DER, ENCFF426RDP 910144875 ENCODE Processing Pipeline 6763a5aeffbc54ab532492846aa0f7fa https://www.encodeproject.org/files/ENCFF531NJC/@@download/ENCFF531NJC.bigWig GRCh38 released borderline replicate concordance ENCFF521BXD bigWig signal p-value ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF357QWW 1022374322 ENCODE Processing Pipeline 76d57828bc384f47c9e16dd75535f163 https://www.encodeproject.org/files/ENCFF521BXD/@@download/ENCFF521BXD.bigWig GRCh38 released borderline replicate concordance ENCFF373YKZ bigWig signal p-value ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF060DER, ENCFF291AFY, ENCFF357QWW, ENCFF426RDP 1603719969 ENCODE Processing Pipeline 3df32807dc3ad862561c731f7105017e https://www.encodeproject.org/files/ENCFF373YKZ/@@download/ENCFF373YKZ.bigWig GRCh38 released borderline replicate concordance ENCFF951TPD bigWig fold change over control ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF060DER, ENCFF426RDP 1007827549 ENCODE Processing Pipeline 42d24e41ff9ab54acac33aaa6b4a5e1b https://www.encodeproject.org/files/ENCFF951TPD/@@download/ENCFF951TPD.bigWig GRCh38 released borderline replicate concordance ENCFF212BTU bigWig fold change over control ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF357QWW 1278349554 ENCODE Processing Pipeline b77765663d81a9b99c88c2b84e3884f0 https://www.encodeproject.org/files/ENCFF212BTU/@@download/ENCFF212BTU.bigWig GRCh38 released borderline replicate concordance ENCFF725DVY bigWig fold change over control ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF060DER, ENCFF291AFY, ENCFF357QWW, ENCFF426RDP 2036723624 ENCODE Processing Pipeline 73cc017c415c1869462e8afe0ae00186 https://www.encodeproject.org/files/ENCFF725DVY/@@download/ENCFF725DVY.bigWig GRCh38 released borderline replicate concordance ENCFF905WXM bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF357QWW 6020237 ENCODE Processing Pipeline 20dca843a96c64b213e8efc2ceccd8ea https://www.encodeproject.org/files/ENCFF905WXM/@@download/ENCFF905WXM.bed.gz GRCh38 released borderline replicate concordance ENCFF968QCX bigBed narrowPeak optimal idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF899MQW 138858 ENCODE Processing Pipeline 0ff4c121687fae9580ac71b4460ab22e https://www.encodeproject.org/files/ENCFF968QCX/@@download/ENCFF968QCX.bigBed GRCh38 released borderline replicate concordance ENCFF633KDK bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF060DER, ENCFF426RDP 5499900 ENCODE Processing Pipeline 504e56a8605a59e096c917fa3341f02e https://www.encodeproject.org/files/ENCFF633KDK/@@download/ENCFF633KDK.bed.gz GRCh38 released borderline replicate concordance ENCFF393WCP bigBed narrowPeak conservative idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF356XXS 105059 ENCODE Processing Pipeline c3a42d314c158345e84b65c347be8981 https://www.encodeproject.org/files/ENCFF393WCP/@@download/ENCFF393WCP.bigBed GRCh38 released borderline replicate concordance ENCFF678MPZ bigBed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF905WXM 11159119 ENCODE Processing Pipeline ed7925bd7cc092fdf71d3d75ed3aa670 https://www.encodeproject.org/files/ENCFF678MPZ/@@download/ENCFF678MPZ.bigBed GRCh38 released borderline replicate concordance ENCFF746FWF bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF060DER, ENCFF291AFY, ENCFF357QWW, ENCFF426RDP 6915957 ENCODE Processing Pipeline 8ed1f8a2e6b3c75b1ddae6c3db8f6cc3 https://www.encodeproject.org/files/ENCFF746FWF/@@download/ENCFF746FWF.bed.gz GRCh38 released borderline replicate concordance ENCFF378TJV bigBed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF633KDK 11223432 ENCODE Processing Pipeline 8c64747f92b5229470a4d67ed6f07925 https://www.encodeproject.org/files/ENCFF378TJV/@@download/ENCFF378TJV.bigBed GRCh38 released borderline replicate concordance ENCFF356XXS bed narrowPeak conservative idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF633KDK, ENCFF746FWF, ENCFF905WXM 20336 ENCODE Processing Pipeline 6a12bc091c100fbc181d2be312212fb6 https://www.encodeproject.org/files/ENCFF356XXS/@@download/ENCFF356XXS.bed.gz GRCh38 released borderline replicate concordance ENCFF611OTT bigBed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF746FWF 11172099 ENCODE Processing Pipeline 45054e362f773c74577e389d11a4fd6a https://www.encodeproject.org/files/ENCFF611OTT/@@download/ENCFF611OTT.bigBed GRCh38 released borderline replicate concordance ENCFF899MQW bed narrowPeak optimal idr thresholded peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF633KDK, ENCFF746FWF, ENCFF905WXM 39944 ENCODE Processing Pipeline 0eed2c81fc9d337fd3048f1183d7209a https://www.encodeproject.org/files/ENCFF899MQW/@@download/ENCFF899MQW.bed.gz GRCh38 released borderline replicate concordance ENCFF724HOV fastq reads ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 484477990 Xiang-Dong Fu, UCSD 64043d2b0fb7895db4917b8dbb06e9ce https://www.encodeproject.org/files/ENCFF724HOV/@@download/ENCFF724HOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF744ZJK/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF428XVA fastq reads ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 506607855 Xiang-Dong Fu, UCSD bef7bfb36761a2c4382451039a3dee47 https://www.encodeproject.org/files/ENCFF428XVA/@@download/ENCFF428XVA.fastq.gz Illumina HiSeq 2000 /files/ENCFF513NDA/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF380RZX bam unfiltered alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF428XVA, ENCFF643CGH 686536915 ENCODE Processing Pipeline 564c691116df996c81ccf5b645a6fb36 https://www.encodeproject.org/files/ENCFF380RZX/@@download/ENCFF380RZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF080PPI bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF428XVA, ENCFF643CGH 384469422 ENCODE Processing Pipeline 54a6271b5f9c8a7333440cdc9b4494fd https://www.encodeproject.org/files/ENCFF080PPI/@@download/ENCFF080PPI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF531AUS fastq reads ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 685624713 Xiang-Dong Fu, UCSD 63ad265623b8b7b54bb4760ea6896c73 https://www.encodeproject.org/files/ENCFF531AUS/@@download/ENCFF531AUS.fastq.gz Illumina HiSeq 2500 /files/ENCFF744ZJK/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF951VMN bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF428XVA, ENCFF807MUK 385052908 ENCODE Processing Pipeline 5d68646b50a9302069276a28d79fa994 https://www.encodeproject.org/files/ENCFF951VMN/@@download/ENCFF951VMN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF512GCO bam unfiltered alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF428XVA, ENCFF807MUK 684287836 ENCODE Processing Pipeline f46d68313d08f6c62e5dc2de20e73a1d https://www.encodeproject.org/files/ENCFF512GCO/@@download/ENCFF512GCO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF340TJZ bam unfiltered alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF531AUS, ENCFF643CGH, ENCFF724HOV 1142238687 ENCODE Processing Pipeline f3b421700e660c1aef7a9c94fa42b9c5 https://www.encodeproject.org/files/ENCFF340TJZ/@@download/ENCFF340TJZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF149TIO bam unfiltered alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF531AUS, ENCFF724HOV, ENCFF807MUK 1135614301 ENCODE Processing Pipeline dee0283ffdfa8612fecd0f0c6c272a6e https://www.encodeproject.org/files/ENCFF149TIO/@@download/ENCFF149TIO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF300QTI bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF531AUS, ENCFF724HOV, ENCFF807MUK 461289338 ENCODE Processing Pipeline e91cb6cee1f946c93740d95c17468628 https://www.encodeproject.org/files/ENCFF300QTI/@@download/ENCFF300QTI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF258VXR bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF531AUS, ENCFF643CGH, ENCFF724HOV 460737283 ENCODE Processing Pipeline 26160005a207b7dd118d3b538392d7df https://www.encodeproject.org/files/ENCFF258VXR/@@download/ENCFF258VXR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF066UXJ bigWig signal p-value ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF529GUX, ENCFF951VMN 521287749 ENCODE Processing Pipeline ef9991c1e5c738317912df70df31b457 https://www.encodeproject.org/files/ENCFF066UXJ/@@download/ENCFF066UXJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF663TOC bigWig fold change over control ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF529GUX, ENCFF951VMN 328011442 ENCODE Processing Pipeline 462786f097169add4dcc8ad273d9020b https://www.encodeproject.org/files/ENCFF663TOC/@@download/ENCFF663TOC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF444PRG bigWig signal p-value ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF080PPI, ENCFF554LOM 478494377 ENCODE Processing Pipeline 41ea08e2711a0a97db1d8fa6fd4ec97e https://www.encodeproject.org/files/ENCFF444PRG/@@download/ENCFF444PRG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF479RSN bigWig signal p-value ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF300QTI, ENCFF457CIV 563671533 ENCODE Processing Pipeline fe31efdee532489595801c0e359c6c81 https://www.encodeproject.org/files/ENCFF479RSN/@@download/ENCFF479RSN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF186XHH bigWig fold change over control ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF080PPI, ENCFF554LOM 327508021 ENCODE Processing Pipeline 2f7fa78f15c4e8b3f80c69acbeec2aff https://www.encodeproject.org/files/ENCFF186XHH/@@download/ENCFF186XHH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF358WGP bigWig signal p-value ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF080PPI, ENCFF258VXR, ENCFF554LOM, ENCFF926NUN 953970511 ENCODE Processing Pipeline 32c5662865ef3d1bfa9b5efcead019af https://www.encodeproject.org/files/ENCFF358WGP/@@download/ENCFF358WGP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF377LTD bigWig fold change over control ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF300QTI, ENCFF457CIV, ENCFF529GUX, ENCFF951VMN 828198112 ENCODE Processing Pipeline ff6107fdb5e44d3ee305106ce3200f9d https://www.encodeproject.org/files/ENCFF377LTD/@@download/ENCFF377LTD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF640GRS bigBed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF341OFU 13228308 ENCODE Processing Pipeline 43c82c87698ee2c8e06da4ed272f68cc https://www.encodeproject.org/files/ENCFF640GRS/@@download/ENCFF640GRS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF449FJO bigWig signal p-value ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF258VXR, ENCFF926NUN 529566781 ENCODE Processing Pipeline b8cdcbae87a41d70872f5df96d6cd966 https://www.encodeproject.org/files/ENCFF449FJO/@@download/ENCFF449FJO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF341OFU bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF300QTI, ENCFF457CIV, ENCFF529GUX, ENCFF951VMN 6788681 ENCODE Processing Pipeline b84cfe2d4b41b5192327001cb1baecf8 https://www.encodeproject.org/files/ENCFF341OFU/@@download/ENCFF341OFU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF175KKB bigBed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF255AOS 13088563 ENCODE Processing Pipeline f56da44714f3908d2a8659f900811da1 https://www.encodeproject.org/files/ENCFF175KKB/@@download/ENCFF175KKB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF108CPW bigBed narrowPeak optimal idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF883WYX 407275 ENCODE Processing Pipeline 09910123004695d871e3165bcf6f9b54 https://www.encodeproject.org/files/ENCFF108CPW/@@download/ENCFF108CPW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF461WCG bigWig signal p-value ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF300QTI, ENCFF457CIV, ENCFF529GUX, ENCFF951VMN 908262727 ENCODE Processing Pipeline 3c3597fdb86177c7979fc8e00115c4cf https://www.encodeproject.org/files/ENCFF461WCG/@@download/ENCFF461WCG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF447CUF bigWig fold change over control ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF258VXR, ENCFF926NUN 370703006 ENCODE Processing Pipeline 9c732414ae25b7dd6ca7f5428b72e0b7 https://www.encodeproject.org/files/ENCFF447CUF/@@download/ENCFF447CUF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF255AOS bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF529GUX, ENCFF951VMN 5745510 ENCODE Processing Pipeline 5eefc812b28c3b59766e5f51524c526e https://www.encodeproject.org/files/ENCFF255AOS/@@download/ENCFF255AOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF616OHG bigWig fold change over control ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF080PPI, ENCFF258VXR, ENCFF554LOM, ENCFF926NUN 827189968 ENCODE Processing Pipeline 75f66d976d31c601b69b57ff4473d194 https://www.encodeproject.org/files/ENCFF616OHG/@@download/ENCFF616OHG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF019GXB bigWig fold change over control ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF300QTI, ENCFF457CIV 373412390 ENCODE Processing Pipeline b25b4996859893a1953fd8da9a32276d https://www.encodeproject.org/files/ENCFF019GXB/@@download/ENCFF019GXB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF272ULK bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF300QTI, ENCFF457CIV 5730572 ENCODE Processing Pipeline 6ed5a6aad90593c15534d55f3255d91a https://www.encodeproject.org/files/ENCFF272ULK/@@download/ENCFF272ULK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF715VWF bigBed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF272ULK 13229882 ENCODE Processing Pipeline ff1c6c6cf16046f62c5b78c1e00fc02c https://www.encodeproject.org/files/ENCFF715VWF/@@download/ENCFF715VWF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF362ZTW bed narrowPeak conservative idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF255AOS, ENCFF272ULK, ENCFF341OFU 162103 ENCODE Processing Pipeline 1a50e5972b86befb646a5fc2b567f457 https://www.encodeproject.org/files/ENCFF362ZTW/@@download/ENCFF362ZTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF201OXE bigBed narrowPeak conservative idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF362ZTW 374715 ENCODE Processing Pipeline a6f74466033aa1046caa0320340dfb78 https://www.encodeproject.org/files/ENCFF201OXE/@@download/ENCFF201OXE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF883WYX bed narrowPeak optimal idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF255AOS, ENCFF272ULK, ENCFF341OFU 183001 ENCODE Processing Pipeline eb13fa4a3357a71054dc9cd775fd98d3 https://www.encodeproject.org/files/ENCFF883WYX/@@download/ENCFF883WYX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF354QUL bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF080PPI, ENCFF554LOM 5620857 ENCODE Processing Pipeline a511c0135ccad5e7cdd0189c2a406aa7 https://www.encodeproject.org/files/ENCFF354QUL/@@download/ENCFF354QUL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF609SGB bigBed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF339HLR 13254333 ENCODE Processing Pipeline 69ddaee56a086c7b5d55d1045859878b https://www.encodeproject.org/files/ENCFF609SGB/@@download/ENCFF609SGB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF478JBB bigBed narrowPeak conservative idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF020OCJ 376323 ENCODE Processing Pipeline 43037c48aa08fe35c308faf8bbcdef59 https://www.encodeproject.org/files/ENCFF478JBB/@@download/ENCFF478JBB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF506LKI bigBed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF800KZC 13267320 ENCODE Processing Pipeline bd6e48c79d24549b76e7e44fe7cfcea4 https://www.encodeproject.org/files/ENCFF506LKI/@@download/ENCFF506LKI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF339HLR bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF258VXR, ENCFF926NUN 5618932 ENCODE Processing Pipeline 931a4bc3bd3ac4ebce1e0c02a666dfa4 https://www.encodeproject.org/files/ENCFF339HLR/@@download/ENCFF339HLR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF020OCJ bed narrowPeak conservative idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF339HLR, ENCFF354QUL, ENCFF419RSJ, ENCFF800KZC 161800 ENCODE Processing Pipeline a6f3bbaeb71070604438368e7a58b4ad https://www.encodeproject.org/files/ENCFF020OCJ/@@download/ENCFF020OCJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF084DTV bed narrowPeak optimal idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF339HLR, ENCFF354QUL, ENCFF419RSJ, ENCFF800KZC 177627 ENCODE Processing Pipeline 855a976a31e1f8e958fffe778e5b8a62 https://www.encodeproject.org/files/ENCFF084DTV/@@download/ENCFF084DTV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002WKI bigBed narrowPeak optimal idr thresholded peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF084DTV 401578 ENCODE Processing Pipeline 6bf038b588cec36d0726f53ce3ad0fc5 https://www.encodeproject.org/files/ENCFF002WKI/@@download/ENCFF002WKI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF800KZC bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF080PPI, ENCFF258VXR, ENCFF554LOM, ENCFF926NUN 6748215 ENCODE Processing Pipeline 4facb7a3b2dcfca297e12ab6b8ad2572 https://www.encodeproject.org/files/ENCFF800KZC/@@download/ENCFF800KZC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF587CDK bigBed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF354QUL 13094938 ENCODE Processing Pipeline 930ecfa50f352cad568e3df488fd097d https://www.encodeproject.org/files/ENCFF587CDK/@@download/ENCFF587CDK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF044BFC bam unfiltered alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF042XDV, ENCFF324PPG, ENCFF807MUK 5941048046 ENCODE Processing Pipeline ba6ad9431f5aaca730cbcaac369fffcc https://www.encodeproject.org/files/ENCFF044BFC/@@download/ENCFF044BFC.bam hg19 released ENCFF584SQC bam unfiltered alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF124RBK, ENCFF554IYL, ENCFF807MUK 6675199294 ENCODE Processing Pipeline 089b71f37230792721af599b7d5b13dc https://www.encodeproject.org/files/ENCFF584SQC/@@download/ENCFF584SQC.bam hg19 released ENCFF324PPG fastq reads ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF042XDV 2714637888 Michael Snyder, Stanford 86e680fc995f80ab12924812a409d6de SRA:SRR5111443 https://www.encodeproject.org/files/ENCFF324PPG/@@download/ENCFF324PPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF554IYL fastq reads ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF124RBK 3079931305 Michael Snyder, Stanford ca4abf9ac48e9687fcee5de7c1431bbd SRA:SRR5111442 https://www.encodeproject.org/files/ENCFF554IYL/@@download/ENCFF554IYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF042XDV fastq reads ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF324PPG 2574692621 Michael Snyder, Stanford 86c09b30dde84b78a54ab020175d92a4 SRA:SRR5111443 https://www.encodeproject.org/files/ENCFF042XDV/@@download/ENCFF042XDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF124RBK fastq reads ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF554IYL 2919176486 Michael Snyder, Stanford 3aa66133d7ce87eb41cea4c1e496d522 SRA:SRR5111442 https://www.encodeproject.org/files/ENCFF124RBK/@@download/ENCFF124RBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF302SCR bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF124RBK, ENCFF554IYL, ENCFF807MUK 5377094064 ENCODE Processing Pipeline a78170b89647dabeccb676ef519ff0bf https://www.encodeproject.org/files/ENCFF302SCR/@@download/ENCFF302SCR.bam hg19 released ENCFF865UXV bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF042XDV, ENCFF324PPG, ENCFF807MUK 4858237967 ENCODE Processing Pipeline cb7156d5c83144989fb2d5ef232d4225 https://www.encodeproject.org/files/ENCFF865UXV/@@download/ENCFF865UXV.bam hg19 released ENCFF393YVZ bigWig signal p-value ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF449NNE, ENCFF865UXV 1234155740 ENCODE Processing Pipeline d8f91666a1b36bed6efbda4fe7a01664 https://www.encodeproject.org/files/ENCFF393YVZ/@@download/ENCFF393YVZ.bigWig hg19 released ENCFF615IZK bigWig signal p-value ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF302SCR, ENCFF999EQI 961514682 ENCODE Processing Pipeline 0c5ee31bf88d319f8bb099799a10ef9b https://www.encodeproject.org/files/ENCFF615IZK/@@download/ENCFF615IZK.bigWig hg19 released ENCFF111LJY bigWig signal p-value ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF302SCR, ENCFF449NNE, ENCFF865UXV, ENCFF999EQI 2118076564 ENCODE Processing Pipeline cc2b82f73b4dc4fb3f0e57b2285c4ce9 https://www.encodeproject.org/files/ENCFF111LJY/@@download/ENCFF111LJY.bigWig hg19 released ENCFF338XFA bigWig fold change over control ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF449NNE, ENCFF865UXV 1225109670 ENCODE Processing Pipeline 71f3d56327d421b05cc30ff924ba5aba https://www.encodeproject.org/files/ENCFF338XFA/@@download/ENCFF338XFA.bigWig hg19 released ENCFF275JAS bigWig fold change over control ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF302SCR, ENCFF999EQI 1188099421 ENCODE Processing Pipeline 0b0761c11e8e44ec8ba4153911fa4abb https://www.encodeproject.org/files/ENCFF275JAS/@@download/ENCFF275JAS.bigWig hg19 released ENCFF732DBE bigWig fold change over control ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF302SCR, ENCFF449NNE, ENCFF865UXV, ENCFF999EQI 2118194730 ENCODE Processing Pipeline 90103b9f84450e874045737458ac0a54 https://www.encodeproject.org/files/ENCFF732DBE/@@download/ENCFF732DBE.bigWig hg19 released ENCFF894JDZ bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF449NNE, ENCFF865UXV 6083895 ENCODE Processing Pipeline 6f28a07567a7c87aac0144826f7c10d2 https://www.encodeproject.org/files/ENCFF894JDZ/@@download/ENCFF894JDZ.bed.gz hg19 released ENCFF894RIX bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF302SCR, ENCFF449NNE, ENCFF865UXV, ENCFF999EQI 7086043 ENCODE Processing Pipeline 6f890227a4b23998405b12163d126fd2 https://www.encodeproject.org/files/ENCFF894RIX/@@download/ENCFF894RIX.bed.gz hg19 released ENCFF904OAW bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF302SCR, ENCFF999EQI 6162004 ENCODE Processing Pipeline c0e2723097c48f7a7a56c2195de986d5 https://www.encodeproject.org/files/ENCFF904OAW/@@download/ENCFF904OAW.bed.gz hg19 released ENCFF834UHI bigBed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF894JDZ 11264102 ENCODE Processing Pipeline 2452b64454ca72d09c23dfe36399d374 https://www.encodeproject.org/files/ENCFF834UHI/@@download/ENCFF834UHI.bigBed hg19 released ENCFF640CWE bigBed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF904OAW 11278038 ENCODE Processing Pipeline a6dbb74125fe3bfe5a9c97421f1838a1 https://www.encodeproject.org/files/ENCFF640CWE/@@download/ENCFF640CWE.bigBed hg19 released ENCFF566XIZ bigBed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF894RIX 11297134 ENCODE Processing Pipeline 4c14abb65aa273fcfe0792a1c44bd736 https://www.encodeproject.org/files/ENCFF566XIZ/@@download/ENCFF566XIZ.bigBed hg19 released ENCFF292SZD bed narrowPeak conservative idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF894JDZ, ENCFF894RIX, ENCFF904OAW 18708 ENCODE Processing Pipeline 9f40e4a84a786f4534bf6316df7e2fd1 https://www.encodeproject.org/files/ENCFF292SZD/@@download/ENCFF292SZD.bed.gz hg19 released ENCFF573ALP bed narrowPeak optimal idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF894JDZ, ENCFF894RIX, ENCFF904OAW 35549 ENCODE Processing Pipeline e3b333943669cf298b44651490ef0df4 https://www.encodeproject.org/files/ENCFF573ALP/@@download/ENCFF573ALP.bed.gz hg19 released ENCFF340AVA bigBed narrowPeak conservative idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF292SZD 84488 ENCODE Processing Pipeline d521fa36fb2e2f3abd2807c72cc571f1 https://www.encodeproject.org/files/ENCFF340AVA/@@download/ENCFF340AVA.bigBed hg19 released ENCFF744GIL bigBed narrowPeak optimal idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF573ALP 110350 ENCODE Processing Pipeline ae7924558ffcfa4d0b69d4266309902b https://www.encodeproject.org/files/ENCFF744GIL/@@download/ENCFF744GIL.bigBed hg19 released ENCFF378KCE bam unfiltered alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF042XDV, ENCFF324PPG, ENCFF643CGH 5953678628 ENCODE Processing Pipeline 66246ac141f86935b34e3fd549e84525 https://www.encodeproject.org/files/ENCFF378KCE/@@download/ENCFF378KCE.bam GRCh38 released ENCFF783UJA bam unfiltered alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF124RBK, ENCFF554IYL, ENCFF643CGH 6689466295 ENCODE Processing Pipeline a6101c6f4f675625e6735c3e4099c2c5 https://www.encodeproject.org/files/ENCFF783UJA/@@download/ENCFF783UJA.bam GRCh38 released ENCFF720ANK bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF042XDV, ENCFF324PPG, ENCFF643CGH 4870226174 ENCODE Processing Pipeline b0a8d40527c3917342ddd1d2f057b59b https://www.encodeproject.org/files/ENCFF720ANK/@@download/ENCFF720ANK.bam GRCh38 released ENCFF875FET bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF124RBK, ENCFF554IYL, ENCFF643CGH 5392080530 ENCODE Processing Pipeline 430e16c58bd1b91b3dafd61286b24bba https://www.encodeproject.org/files/ENCFF875FET/@@download/ENCFF875FET.bam GRCh38 released ENCFF108ULG bigWig signal p-value ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF190EPQ, ENCFF720ANK 954453433 ENCODE Processing Pipeline aa433b7f44d24235088aa7f2b5e98663 https://www.encodeproject.org/files/ENCFF108ULG/@@download/ENCFF108ULG.bigWig GRCh38 released ENCFF847BWV bigWig signal p-value ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF875FET, ENCFF950AXC 926498842 ENCODE Processing Pipeline cf2395091c413fa8be9dcaebc18f29f6 https://www.encodeproject.org/files/ENCFF847BWV/@@download/ENCFF847BWV.bigWig GRCh38 released ENCFF348CIS bigWig signal p-value ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF720ANK, ENCFF875FET, ENCFF950AXC 1795467201 ENCODE Processing Pipeline ef1c6a4ba9655f7188520b6bbc5a9564 https://www.encodeproject.org/files/ENCFF348CIS/@@download/ENCFF348CIS.bigWig GRCh38 released ENCFF775KAX bigWig fold change over control ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF190EPQ, ENCFF720ANK 1210370018 ENCODE Processing Pipeline 85bb711f2746bd374d3c0174dbc63ecf https://www.encodeproject.org/files/ENCFF775KAX/@@download/ENCFF775KAX.bigWig GRCh38 released ENCFF398OWD bigWig fold change over control ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF875FET, ENCFF950AXC 1135527414 ENCODE Processing Pipeline 6ce012f954cf23d60172502fbd33875a https://www.encodeproject.org/files/ENCFF398OWD/@@download/ENCFF398OWD.bigWig GRCh38 released ENCFF972FHU bigWig fold change over control ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF720ANK, ENCFF875FET, ENCFF950AXC 2143083288 ENCODE Processing Pipeline 0bc2648534233dec61404baf6135b68b https://www.encodeproject.org/files/ENCFF972FHU/@@download/ENCFF972FHU.bigWig GRCh38 released ENCFF485GJV bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF190EPQ, ENCFF720ANK 5903303 ENCODE Processing Pipeline ddf5517c7405db63e3d8379b037dde0b https://www.encodeproject.org/files/ENCFF485GJV/@@download/ENCFF485GJV.bed.gz GRCh38 released ENCFF721SBW bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF875FET, ENCFF950AXC 5959512 ENCODE Processing Pipeline 4890394253d3cbcce5d136f361146348 https://www.encodeproject.org/files/ENCFF721SBW/@@download/ENCFF721SBW.bed.gz GRCh38 released ENCFF857MEZ bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF720ANK, ENCFF875FET, ENCFF950AXC 7020993 ENCODE Processing Pipeline b8a86800fbd20a5fcbfc0ea2aaa0727b https://www.encodeproject.org/files/ENCFF857MEZ/@@download/ENCFF857MEZ.bed.gz GRCh38 released ENCFF902CZI bigBed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF721SBW 11257336 ENCODE Processing Pipeline c84f1165f0890756d84c7be848e51271 https://www.encodeproject.org/files/ENCFF902CZI/@@download/ENCFF902CZI.bigBed GRCh38 released ENCFF941BKW bigBed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF485GJV 11267022 ENCODE Processing Pipeline 00ec3ac317a2a5af3f9524aa4949d2c0 https://www.encodeproject.org/files/ENCFF941BKW/@@download/ENCFF941BKW.bigBed GRCh38 released ENCFF269DNZ bed narrowPeak conservative idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF485GJV, ENCFF721SBW, ENCFF857MEZ 21395 ENCODE Processing Pipeline fb676002e0fac25e39f0d696cbade77c https://www.encodeproject.org/files/ENCFF269DNZ/@@download/ENCFF269DNZ.bed.gz GRCh38 released ENCFF442OHR bigBed narrowPeak conservative idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF269DNZ 104740 ENCODE Processing Pipeline 1700e38cd866d5e1340a52ece3a2fcad https://www.encodeproject.org/files/ENCFF442OHR/@@download/ENCFF442OHR.bigBed GRCh38 released ENCFF008RFM bigBed narrowPeak optimal idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF735WMX 117828 ENCODE Processing Pipeline f6b78f6132efbc0d7f29e46a95e38860 https://www.encodeproject.org/files/ENCFF008RFM/@@download/ENCFF008RFM.bigBed GRCh38 released ENCFF370RJQ bigBed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF857MEZ 11319334 ENCODE Processing Pipeline 31f395f3f62f6b9ab858d8a890baaf2a https://www.encodeproject.org/files/ENCFF370RJQ/@@download/ENCFF370RJQ.bigBed GRCh38 released ENCFF735WMX bed narrowPeak optimal idr thresholded peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF485GJV, ENCFF721SBW, ENCFF857MEZ 38765 ENCODE Processing Pipeline 35f127ad69d73fe8317ca0403f88ac23 https://www.encodeproject.org/files/ENCFF735WMX/@@download/ENCFF735WMX.bed.gz GRCh38 released ENCFF800QOR fastq reads ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF452KCG 2525641328 Richard Myers, HAIB 4c12dccad998c94da993389f5e336231 https://www.encodeproject.org/files/ENCFF800QOR/@@download/ENCFF800QOR.fastq.gz Illumina HiSeq 2000 /files/ENCFF527OHP/ released antibody characterized with exemption experiment not submitted to GEO ENCFF452KCG fastq reads ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF800QOR 2491204068 Richard Myers, HAIB fef20dce7ea8a2c1f74e344ae6e24293 https://www.encodeproject.org/files/ENCFF452KCG/@@download/ENCFF452KCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF502WHI/ released antibody characterized with exemption experiment not submitted to GEO ENCFF553EOJ bam unfiltered alignments ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF452KCG, ENCFF800QOR, ENCFF807MUK 6000456457 ENCODE Processing Pipeline 3a51f80cd9d00b2165aaae83b254118d https://www.encodeproject.org/files/ENCFF553EOJ/@@download/ENCFF553EOJ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF913EKV bam alignments ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF452KCG, ENCFF800QOR, ENCFF807MUK 4597791295 ENCODE Processing Pipeline 9ff7d23e89f30d471e43ce77791c0c4f https://www.encodeproject.org/files/ENCFF913EKV/@@download/ENCFF913EKV.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF777ZBE bam unfiltered alignments ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF452KCG, ENCFF643CGH, ENCFF800QOR 6026994274 ENCODE Processing Pipeline 4cffd29ff195052961cd64de450070f5 https://www.encodeproject.org/files/ENCFF777ZBE/@@download/ENCFF777ZBE.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF431GNR bam alignments ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF452KCG, ENCFF643CGH, ENCFF800QOR 4601549056 ENCODE Processing Pipeline fd177910333ea3062f555808ea4fd702 https://www.encodeproject.org/files/ENCFF431GNR/@@download/ENCFF431GNR.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF072JVL bed narrowPeak peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF431GNR, ENCFF511XEA 6836316 ENCODE Processing Pipeline 770d55a6af1128ce10d1ef276620be48 https://www.encodeproject.org/files/ENCFF072JVL/@@download/ENCFF072JVL.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF755HOJ bigBed narrowPeak peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF072JVL 13493520 ENCODE Processing Pipeline 8baf925850f91610336f376de569e32d https://www.encodeproject.org/files/ENCFF755HOJ/@@download/ENCFF755HOJ.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF250QNK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF072JVL, ENCFF419RSJ 397031 ENCODE Processing Pipeline 5727c4def99910e84785562826d2fdeb https://www.encodeproject.org/files/ENCFF250QNK/@@download/ENCFF250QNK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF270DYF bigWig fold change over control ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF431GNR, ENCFF511XEA 1373570707 ENCODE Processing Pipeline d2263faebe6d0792e2839c0625491d30 https://www.encodeproject.org/files/ENCFF270DYF/@@download/ENCFF270DYF.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF511FZJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF250QNK 827349 ENCODE Processing Pipeline 661b5706749d57b0eb500f817ca7fbf7 https://www.encodeproject.org/files/ENCFF511FZJ/@@download/ENCFF511FZJ.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF425JXG bigWig signal p-value ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF431GNR, ENCFF511XEA 1311506412 ENCODE Processing Pipeline 9dda38c13e89d11b4ba585e8fbd08a83 https://www.encodeproject.org/files/ENCFF425JXG/@@download/ENCFF425JXG.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF081RPC bigBed narrowPeak peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF498MXX 13503641 ENCODE Processing Pipeline c2e5e92c962ceeb3a74120a03975f58f https://www.encodeproject.org/files/ENCFF081RPC/@@download/ENCFF081RPC.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF597BVM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF335UAO 826256 ENCODE Processing Pipeline 385e198da4c6d9c77df029153b27bbd9 https://www.encodeproject.org/files/ENCFF597BVM/@@download/ENCFF597BVM.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF215PWS bigWig fold change over control ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF768NBN, ENCFF913EKV 1371986814 ENCODE Processing Pipeline 60800ac72b6dd7e6148a7c4dbc131857 https://www.encodeproject.org/files/ENCFF215PWS/@@download/ENCFF215PWS.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF335UAO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF498MXX 400133 ENCODE Processing Pipeline 2ead68ee13c1e9a21e317844f429df2d https://www.encodeproject.org/files/ENCFF335UAO/@@download/ENCFF335UAO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF866LFG bigWig signal p-value ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF768NBN, ENCFF913EKV 1308974422 ENCODE Processing Pipeline 0aabe9612123b7def0884a3530769620 https://www.encodeproject.org/files/ENCFF866LFG/@@download/ENCFF866LFG.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF498MXX bed narrowPeak peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF768NBN, ENCFF913EKV 6826330 ENCODE Processing Pipeline ef6b7bf3c7b703372dc65dd4382ecb3d https://www.encodeproject.org/files/ENCFF498MXX/@@download/ENCFF498MXX.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF197EAD fastq reads ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 1 36 single-ended 1033066599 Bradley Bernstein, Broad 619c41ecc8c2510afca026b893367d43 https://www.encodeproject.org/files/ENCFF197EAD/@@download/ENCFF197EAD.fastq.gz Illumina HiSeq 2000 /files/ENCFF318ZNB/, /files/ENCFF640MKX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF007QNS fastq reads ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 1 36 single-ended 695928767 Bradley Bernstein, Broad 7d8b22d483eed5491e4bf330e1f3c5e7 https://www.encodeproject.org/files/ENCFF007QNS/@@download/ENCFF007QNS.fastq.gz Illumina HiSeq 2500 /files/ENCFF222VRH/, /files/ENCFF595BTS/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF626ZUD bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF007QNS, ENCFF643CGH 587197890 ENCODE Processing Pipeline 5c7a09bafca39d77367d247feb7fd8b4 https://www.encodeproject.org/files/ENCFF626ZUD/@@download/ENCFF626ZUD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF460JIH bam unfiltered alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF197EAD, ENCFF643CGH 1305759005 ENCODE Processing Pipeline b78659067b49d7797f9209acf54bcf66 https://www.encodeproject.org/files/ENCFF460JIH/@@download/ENCFF460JIH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF900BHV bam unfiltered alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF007QNS, ENCFF807MUK 935949915 ENCODE Processing Pipeline be60b63e7019d8ecdc7bfa361339b08a https://www.encodeproject.org/files/ENCFF900BHV/@@download/ENCFF900BHV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF534AFH bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF007QNS, ENCFF807MUK 587622682 ENCODE Processing Pipeline 335e343af5c9c7f9ff626ad3945a0aac https://www.encodeproject.org/files/ENCFF534AFH/@@download/ENCFF534AFH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF349CJZ bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF197EAD, ENCFF643CGH 782429311 ENCODE Processing Pipeline 5b91bae52efa950f1fcbf2671be15a6d https://www.encodeproject.org/files/ENCFF349CJZ/@@download/ENCFF349CJZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF565WPL bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF197EAD, ENCFF807MUK 783033349 ENCODE Processing Pipeline f47bcd262d8dcfe47aa1a5e0febda894 https://www.encodeproject.org/files/ENCFF565WPL/@@download/ENCFF565WPL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF236HCU bam unfiltered alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF007QNS, ENCFF643CGH 939140200 ENCODE Processing Pipeline f376321af40671c14eee0f4d0dc7643a https://www.encodeproject.org/files/ENCFF236HCU/@@download/ENCFF236HCU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF627FVW bam unfiltered alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF197EAD, ENCFF807MUK 1300261860 ENCODE Processing Pipeline 93b9aa81bccdd961da31175af1b17416 https://www.encodeproject.org/files/ENCFF627FVW/@@download/ENCFF627FVW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF304ONS bigWig fold change over control ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF174YPE, ENCFF534AFH 689079913 ENCODE Processing Pipeline 12be86727189ff974107cec57687943e https://www.encodeproject.org/files/ENCFF304ONS/@@download/ENCFF304ONS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF809DSC bigWig fold change over control ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF174YPE, ENCFF534AFH, ENCFF565WPL, ENCFF587UZE 1446909046 ENCODE Processing Pipeline f0e4bf7a017c66a69da440619eefe8f4 https://www.encodeproject.org/files/ENCFF809DSC/@@download/ENCFF809DSC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF849TKV bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF174YPE, ENCFF534AFH, ENCFF565WPL, ENCFF587UZE 6739745 ENCODE Processing Pipeline c7aa3ceb94445494c19467bc11116f89 https://www.encodeproject.org/files/ENCFF849TKV/@@download/ENCFF849TKV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF913BHH bigBed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF086WBN 13676861 ENCODE Processing Pipeline 72d1194bf92e7417c1013ea868b9b26d https://www.encodeproject.org/files/ENCFF913BHH/@@download/ENCFF913BHH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF778GTL bigBed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF724MMC 13840255 ENCODE Processing Pipeline e7d606e2b1f50cb408aae60014f7b2b4 https://www.encodeproject.org/files/ENCFF778GTL/@@download/ENCFF778GTL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF075HTC bigBed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF849TKV 14016434 ENCODE Processing Pipeline caca5317a25af308b974af3fcdeb8638 https://www.encodeproject.org/files/ENCFF075HTC/@@download/ENCFF075HTC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF170YME bigWig signal p-value ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF292PQI, ENCFF626ZUD 898440703 ENCODE Processing Pipeline 5217161d6c37f684b054c255d75f602c https://www.encodeproject.org/files/ENCFF170YME/@@download/ENCFF170YME.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF587VEO bigWig fold change over control ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF292PQI, ENCFF626ZUD 691034484 ENCODE Processing Pipeline a7b6f56a69f64c0ba8ad8a78280a39dc https://www.encodeproject.org/files/ENCFF587VEO/@@download/ENCFF587VEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF441OJP bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF292PQI, ENCFF626ZUD 6006608 ENCODE Processing Pipeline de6c918e9e67d003eb1a901e31381919 https://www.encodeproject.org/files/ENCFF441OJP/@@download/ENCFF441OJP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF047HAG bed narrowPeak conservative idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF441OJP, ENCFF674NQM, ENCFF748YMB 926768 ENCODE Processing Pipeline 4fefad0947e7bcfd5a70f168b690901d https://www.encodeproject.org/files/ENCFF047HAG/@@download/ENCFF047HAG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF544SXW bigWig signal p-value ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF565WPL, ENCFF587UZE 919457486 ENCODE Processing Pipeline 0e8f110397fedec40bf569988c451f36 https://www.encodeproject.org/files/ENCFF544SXW/@@download/ENCFF544SXW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF254RJD bigWig fold change over control ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF565WPL, ENCFF587UZE 609168587 ENCODE Processing Pipeline 60c82d341c3e76d6f1472845f998a6f8 https://www.encodeproject.org/files/ENCFF254RJD/@@download/ENCFF254RJD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF543WUV bigWig signal p-value ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF174YPE, ENCFF534AFH 885325370 ENCODE Processing Pipeline 1e6acea4c88564f33fc7195698981aa1 https://www.encodeproject.org/files/ENCFF543WUV/@@download/ENCFF543WUV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF986LAI bigWig signal p-value ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF174YPE, ENCFF534AFH, ENCFF565WPL, ENCFF587UZE 1654563608 ENCODE Processing Pipeline 4030b121b6f7f3727346ebecc6ed4094 https://www.encodeproject.org/files/ENCFF986LAI/@@download/ENCFF986LAI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF164EJE bed narrowPeak optimal idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF086WBN, ENCFF724MMC, ENCFF849TKV 948209 ENCODE Processing Pipeline 1dfc11608ac341e8e3002b060457b7b6 https://www.encodeproject.org/files/ENCFF164EJE/@@download/ENCFF164EJE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF255NDT bigBed narrowPeak optimal idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF164EJE 1554382 ENCODE Processing Pipeline ca0156cf7d5a4c8eaf935ddd13dd358a https://www.encodeproject.org/files/ENCFF255NDT/@@download/ENCFF255NDT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF604LTR bigBed narrowPeak conservative idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF990LUT 1530609 ENCODE Processing Pipeline 101fc6ead3d1ee113007ec231a9399e1 https://www.encodeproject.org/files/ENCFF604LTR/@@download/ENCFF604LTR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF212PYL bigWig fold change over control ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF107RUY, ENCFF349CJZ 621771777 ENCODE Processing Pipeline d774b4842403bd3d9e143c1c3ec74462 https://www.encodeproject.org/files/ENCFF212PYL/@@download/ENCFF212PYL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF769KKD bigWig signal p-value ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF107RUY, ENCFF292PQI, ENCFF349CJZ, ENCFF626ZUD 1592195250 ENCODE Processing Pipeline d4191f72e615d591637bd07afa732479 https://www.encodeproject.org/files/ENCFF769KKD/@@download/ENCFF769KKD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF724MMC bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF565WPL, ENCFF587UZE 6157902 ENCODE Processing Pipeline c0564501c9dc56734c9d47b1729a7350 https://www.encodeproject.org/files/ENCFF724MMC/@@download/ENCFF724MMC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF086WBN bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF174YPE, ENCFF534AFH 6039099 ENCODE Processing Pipeline 4f2ff68cfdf21588992ce9392bcc0126 https://www.encodeproject.org/files/ENCFF086WBN/@@download/ENCFF086WBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF990LUT bed narrowPeak conservative idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF086WBN, ENCFF724MMC, ENCFF849TKV 926785 ENCODE Processing Pipeline 23318ddaad27a45ffe09d6a981460044 https://www.encodeproject.org/files/ENCFF990LUT/@@download/ENCFF990LUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF748YMB bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF107RUY, ENCFF349CJZ 6158003 ENCODE Processing Pipeline b240dc65dd461ccc0b1313df0da18653 https://www.encodeproject.org/files/ENCFF748YMB/@@download/ENCFF748YMB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF674NQM bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF107RUY, ENCFF292PQI, ENCFF349CJZ, ENCFF626ZUD 6741081 ENCODE Processing Pipeline 0f8e39dae44e915588c9891823dd3771 https://www.encodeproject.org/files/ENCFF674NQM/@@download/ENCFF674NQM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF476DVJ bed narrowPeak optimal idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF441OJP, ENCFF674NQM, ENCFF748YMB 938403 ENCODE Processing Pipeline e943f1b99e737fccdf32333591bab0d4 https://www.encodeproject.org/files/ENCFF476DVJ/@@download/ENCFF476DVJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF119XZM bigWig signal p-value ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF107RUY, ENCFF349CJZ 814023006 ENCODE Processing Pipeline d69eaae826c9de9b4114a0bc235906ce https://www.encodeproject.org/files/ENCFF119XZM/@@download/ENCFF119XZM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF520RDK bigBed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF748YMB 13845818 ENCODE Processing Pipeline fd5cceba57551bdf4eb24035b742b57f https://www.encodeproject.org/files/ENCFF520RDK/@@download/ENCFF520RDK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF196IHX bigBed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF441OJP 13642407 ENCODE Processing Pipeline 35dbc8f8f13ac143cc9728c3ab17699b https://www.encodeproject.org/files/ENCFF196IHX/@@download/ENCFF196IHX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF606YFS bigWig fold change over control ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF107RUY, ENCFF292PQI, ENCFF349CJZ, ENCFF626ZUD 1425188475 ENCODE Processing Pipeline 46e90897e59ed3ac5a153e84740f2dd5 https://www.encodeproject.org/files/ENCFF606YFS/@@download/ENCFF606YFS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF106YKR bigBed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF674NQM 14021095 ENCODE Processing Pipeline eb631e938e07afeae47173697f6bb279 https://www.encodeproject.org/files/ENCFF106YKR/@@download/ENCFF106YKR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF539FLB bigBed narrowPeak optimal idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF476DVJ 1544484 ENCODE Processing Pipeline 5e16df5215a162433e31bed6f2e9f122 https://www.encodeproject.org/files/ENCFF539FLB/@@download/ENCFF539FLB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF490VKU bigBed narrowPeak conservative idr thresholded peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF047HAG 1533165 ENCODE Processing Pipeline a745d737c5314c9bf95326bdb11460f2 https://www.encodeproject.org/files/ENCFF490VKU/@@download/ENCFF490VKU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF763BDQ bigWig signal p-value ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO 2009222479 ENCODE Processing Pipeline 3ef450ef8195e491a5153f067be1318f https://www.encodeproject.org/files/ENCFF763BDQ/@@download/ENCFF763BDQ.bigWig hg19 released borderline replicate concordance NTR biosample ENCFF047NUG bigWig fold change over control ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO 2533592258 ENCODE Processing Pipeline dadab8daf6b0080032ac1a07048655c4 https://www.encodeproject.org/files/ENCFF047NUG/@@download/ENCFF047NUG.bigWig hg19 released borderline replicate concordance NTR biosample ENCFF388YBJ bigBed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF795HRT 12956494 ENCODE Processing Pipeline d58188d85b1a7b841d29a7369362d433 https://www.encodeproject.org/files/ENCFF388YBJ/@@download/ENCFF388YBJ.bigBed hg19 released borderline replicate concordance NTR biosample ENCFF162XLN bigWig signal p-value ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 2030321910 ENCODE Processing Pipeline 5062dabcfa92f7cc35b9190e25de784f https://www.encodeproject.org/files/ENCFF162XLN/@@download/ENCFF162XLN.bigWig hg19 released borderline replicate concordance NTR biosample ENCFF172IQM bigWig fold change over control ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 4229181559 ENCODE Processing Pipeline 0dc962321390987cff50b2c9396fabe6 https://www.encodeproject.org/files/ENCFF172IQM/@@download/ENCFF172IQM.bigWig hg19 released borderline replicate concordance NTR biosample ENCFF863SKM bigWig fold change over control ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 2295838972 ENCODE Processing Pipeline bace6437aec97be46cdab91827e02879 https://www.encodeproject.org/files/ENCFF863SKM/@@download/ENCFF863SKM.bigWig hg19 released borderline replicate concordance NTR biosample ENCFF120SGL bigWig signal p-value ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 2378351651 ENCODE Processing Pipeline 49dfbad8612cf01550cec0930b0466b1 https://www.encodeproject.org/files/ENCFF120SGL/@@download/ENCFF120SGL.bigWig hg19 released borderline replicate concordance NTR biosample ENCFF005UXS bigBed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF340IJR 13006917 ENCODE Processing Pipeline 14d7e1f32defe9469cba9550d1eb9b4f https://www.encodeproject.org/files/ENCFF005UXS/@@download/ENCFF005UXS.bigBed hg19 released borderline replicate concordance NTR biosample ENCFF795HRT bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO 7317253 ENCODE Processing Pipeline 05f9cdcc9027a766d96bb56fe6079796 https://www.encodeproject.org/files/ENCFF795HRT/@@download/ENCFF795HRT.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF222IPA bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 7317471 ENCODE Processing Pipeline c4bb1ea6ab46ad9239a67648d69ef2b4 https://www.encodeproject.org/files/ENCFF222IPA/@@download/ENCFF222IPA.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF643GOM bigBed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF222IPA 12877949 ENCODE Processing Pipeline 902b1310f99b41ab2fa133d030ecf2b5 https://www.encodeproject.org/files/ENCFF643GOM/@@download/ENCFF643GOM.bigBed hg19 released borderline replicate concordance NTR biosample ENCFF227WQY bed narrowPeak conservative idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF222IPA, ENCFF340IJR, ENCFF795HRT 179337 ENCODE Processing Pipeline 72d45f682d23d93f6c8ad3c2c193cd09 https://www.encodeproject.org/files/ENCFF227WQY/@@download/ENCFF227WQY.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF546GOH bigBed narrowPeak conservative idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF227WQY 568188 ENCODE Processing Pipeline 383c8b293683633f98056ec5f38ef83d https://www.encodeproject.org/files/ENCFF546GOH/@@download/ENCFF546GOH.bigBed hg19 released borderline replicate concordance NTR biosample ENCFF340IJR bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 7326859 ENCODE Processing Pipeline e1bc0a703ccbee05c3e83537391987d8 https://www.encodeproject.org/files/ENCFF340IJR/@@download/ENCFF340IJR.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF146HGZ bed narrowPeak optimal idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF222IPA, ENCFF340IJR, ENCFF795HRT 453992 ENCODE Processing Pipeline 5b42ec5877c4a8ed087f9056524528d1 https://www.encodeproject.org/files/ENCFF146HGZ/@@download/ENCFF146HGZ.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF059SGW bigBed narrowPeak optimal idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF146HGZ 1182314 ENCODE Processing Pipeline c67af1a765824e0aebc9e5e0da2c435b https://www.encodeproject.org/files/ENCFF059SGW/@@download/ENCFF059SGW.bigBed hg19 released borderline replicate concordance NTR biosample ENCFF857WNF fastq reads ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF855KRX 5886102743 Michael Snyder, Stanford 862ce1d06c591d10321572782aba4ab6 SRA:SRR6213395 https://www.encodeproject.org/files/ENCFF857WNF/@@download/ENCFF857WNF.fastq.gz Illumina HiSeq 2000 /files/ENCFF838OWF/ released borderline replicate concordance NTR biosample ENCFF855KRX fastq reads ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF857WNF 5954646618 Michael Snyder, Stanford 7d5e0b7a3949191c2945005a46afa449 SRA:SRR6213395 https://www.encodeproject.org/files/ENCFF855KRX/@@download/ENCFF855KRX.fastq.gz Illumina HiSeq 2000 /files/ENCFF131MCT/ released borderline replicate concordance NTR biosample ENCFF935CXJ fastq reads ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF803FBH 5900375396 Michael Snyder, Stanford 53ebf6eeed94d75270bdd2e6d9c2be1b SRA:SRR6213394 https://www.encodeproject.org/files/ENCFF935CXJ/@@download/ENCFF935CXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF074ZBL/ released borderline replicate concordance NTR biosample ENCFF803FBH fastq reads ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF935CXJ 5817956934 Michael Snyder, Stanford ee5df3dc0e147356bb7473ec412697ce SRA:SRR6213394 https://www.encodeproject.org/files/ENCFF803FBH/@@download/ENCFF803FBH.fastq.gz Illumina HiSeq 2000 /files/ENCFF313MNH/ released borderline replicate concordance NTR biosample ENCFF135DOX bam unfiltered alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF803FBH, ENCFF807MUK, ENCFF935CXJ 12122365313 ENCODE Processing Pipeline a5baf7bb6fc92dc448eef92a79b97bd3 https://www.encodeproject.org/files/ENCFF135DOX/@@download/ENCFF135DOX.bam hg19 released borderline replicate concordance NTR biosample ENCFF574WTI bam unfiltered alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF807MUK, ENCFF855KRX, ENCFF857WNF 11152431983 ENCODE Processing Pipeline c34ffcc5265d6c34b44ff910707a2034 https://www.encodeproject.org/files/ENCFF574WTI/@@download/ENCFF574WTI.bam hg19 released borderline replicate concordance NTR biosample ENCFF240MZI bam unfiltered alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF643CGH, ENCFF855KRX, ENCFF857WNF 11155478806 ENCODE Processing Pipeline 40cfe410edaed0543737394dde464417 https://www.encodeproject.org/files/ENCFF240MZI/@@download/ENCFF240MZI.bam GRCh38 released borderline replicate concordance NTR biosample ENCFF328JLG bam unfiltered alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF643CGH, ENCFF803FBH, ENCFF935CXJ 12141368815 ENCODE Processing Pipeline 5cb6abae2d0d8bb9599c4445b9499946 https://www.encodeproject.org/files/ENCFF328JLG/@@download/ENCFF328JLG.bam GRCh38 released borderline replicate concordance NTR biosample ENCFF959UDN bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF807MUK, ENCFF855KRX, ENCFF857WNF 8698365697 ENCODE Processing Pipeline 04281cc64dde76344433097c44cb6c17 https://www.encodeproject.org/files/ENCFF959UDN/@@download/ENCFF959UDN.bam hg19 released borderline replicate concordance NTR biosample ENCFF975MPZ bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF643CGH, ENCFF803FBH, ENCFF935CXJ 9793489857 ENCODE Processing Pipeline 4115aea30c8f7a7f2cc7d17ea6253228 https://www.encodeproject.org/files/ENCFF975MPZ/@@download/ENCFF975MPZ.bam GRCh38 released borderline replicate concordance NTR biosample ENCFF357KDK bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF643CGH, ENCFF855KRX, ENCFF857WNF 8706618540 ENCODE Processing Pipeline 5676e8084e680df4864335b3a464421b https://www.encodeproject.org/files/ENCFF357KDK/@@download/ENCFF357KDK.bam GRCh38 released borderline replicate concordance NTR biosample ENCFF008PUA bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF803FBH, ENCFF807MUK, ENCFF935CXJ 9791947320 ENCODE Processing Pipeline 8cdb0089e48af075b914e6c36b97c564 https://www.encodeproject.org/files/ENCFF008PUA/@@download/ENCFF008PUA.bam hg19 released borderline replicate concordance NTR biosample ENCFF154QBR bigWig signal p-value ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF441UFO, ENCFF544WWZ, ENCFF975MPZ 1803039015 ENCODE Processing Pipeline 3e196e94cad221be4d1b2477c5d353c5 https://www.encodeproject.org/files/ENCFF154QBR/@@download/ENCFF154QBR.bigWig GRCh38 released borderline replicate concordance NTR biosample ENCFF746DTB bigWig fold change over control ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF441UFO, ENCFF544WWZ, ENCFF975MPZ 2544730116 ENCODE Processing Pipeline aa9759269711cc237ed25136e82c34fb https://www.encodeproject.org/files/ENCFF746DTB/@@download/ENCFF746DTB.bigWig GRCh38 released borderline replicate concordance NTR biosample ENCFF207IKX bigWig signal p-value ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF357KDK, ENCFF441UFO, ENCFF544WWZ 1930706107 ENCODE Processing Pipeline 825fb682344c53450439182d9b98e7a1 https://www.encodeproject.org/files/ENCFF207IKX/@@download/ENCFF207IKX.bigWig GRCh38 released borderline replicate concordance NTR biosample ENCFF065SHH bigWig fold change over control ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF357KDK, ENCFF441UFO, ENCFF544WWZ, ENCFF975MPZ 4250203936 ENCODE Processing Pipeline 5c1e6edee28a22990038cad59d99b007 https://www.encodeproject.org/files/ENCFF065SHH/@@download/ENCFF065SHH.bigWig GRCh38 released borderline replicate concordance NTR biosample ENCFF799TMJ bigWig signal p-value ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF357KDK, ENCFF441UFO, ENCFF544WWZ, ENCFF975MPZ 2385708318 ENCODE Processing Pipeline d0534d23b8ea92c594de60a0b14da837 https://www.encodeproject.org/files/ENCFF799TMJ/@@download/ENCFF799TMJ.bigWig GRCh38 released borderline replicate concordance NTR biosample ENCFF786BHO bigWig fold change over control ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF357KDK, ENCFF441UFO, ENCFF544WWZ 2297431273 ENCODE Processing Pipeline 759eab579f07058631bf6532f9037b31 https://www.encodeproject.org/files/ENCFF786BHO/@@download/ENCFF786BHO.bigWig GRCh38 released borderline replicate concordance NTR biosample ENCFF166TWI bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF357KDK, ENCFF441UFO, ENCFF544WWZ 7321182 ENCODE Processing Pipeline 5abfc7684ad72b2aa261ab0b22c88ba6 https://www.encodeproject.org/files/ENCFF166TWI/@@download/ENCFF166TWI.bed.gz GRCh38 released borderline replicate concordance NTR biosample ENCFF718QSH bigBed narrowPeak conservative idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF439ZYX 568392 ENCODE Processing Pipeline 9838650c05778336c28301616515e952 https://www.encodeproject.org/files/ENCFF718QSH/@@download/ENCFF718QSH.bigBed GRCh38 released borderline replicate concordance NTR biosample ENCFF368XZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF775BWJ 1185085 ENCODE Processing Pipeline 63daaca298d8292047edfb31a5ff6684 https://www.encodeproject.org/files/ENCFF368XZZ/@@download/ENCFF368XZZ.bigBed GRCh38 released borderline replicate concordance NTR biosample ENCFF828THH bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF441UFO, ENCFF544WWZ, ENCFF975MPZ 7325723 ENCODE Processing Pipeline a5e77686c4955c723fd029fa12a5c4d4 https://www.encodeproject.org/files/ENCFF828THH/@@download/ENCFF828THH.bed.gz GRCh38 released borderline replicate concordance NTR biosample ENCFF432DKF bigBed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF828THH 12976973 ENCODE Processing Pipeline 42a198974cc547f764a7252057237f9f https://www.encodeproject.org/files/ENCFF432DKF/@@download/ENCFF432DKF.bigBed GRCh38 released borderline replicate concordance NTR biosample ENCFF775BWJ bed narrowPeak optimal idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF024KFH, ENCFF166TWI, ENCFF419RSJ, ENCFF828THH 452845 ENCODE Processing Pipeline 98766348d016a13b7d3a9c97925821e7 https://www.encodeproject.org/files/ENCFF775BWJ/@@download/ENCFF775BWJ.bed.gz GRCh38 released borderline replicate concordance NTR biosample ENCFF024KFH bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF357KDK, ENCFF441UFO, ENCFF544WWZ, ENCFF975MPZ 7332986 ENCODE Processing Pipeline 91c78da060c8ec17aba3fe3e906f2f5c https://www.encodeproject.org/files/ENCFF024KFH/@@download/ENCFF024KFH.bed.gz GRCh38 released borderline replicate concordance NTR biosample ENCFF664XYF bigBed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF166TWI 12890588 ENCODE Processing Pipeline 33923634f517e6f8b842bc93c622d882 https://www.encodeproject.org/files/ENCFF664XYF/@@download/ENCFF664XYF.bigBed GRCh38 released borderline replicate concordance NTR biosample ENCFF616NPB bigBed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF024KFH 13024280 ENCODE Processing Pipeline a9b51b05397c4927f1c5b19e2a75f356 https://www.encodeproject.org/files/ENCFF616NPB/@@download/ENCFF616NPB.bigBed GRCh38 released borderline replicate concordance NTR biosample ENCFF439ZYX bed narrowPeak conservative idr thresholded peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF024KFH, ENCFF166TWI, ENCFF419RSJ, ENCFF828THH 178511 ENCODE Processing Pipeline 74432281796c5c36e577218d15e0a174 https://www.encodeproject.org/files/ENCFF439ZYX/@@download/ENCFF439ZYX.bed.gz GRCh38 released borderline replicate concordance NTR biosample ENCFF102EIG fastq reads ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1742017995 Bradley Bernstein, Broad fd557646edb72f74f9aef939356cec18 SRA:SRR5832875 https://www.encodeproject.org/files/ENCFF102EIG/@@download/ENCFF102EIG.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF221INE fastq reads ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1532214227 Bradley Bernstein, Broad 233a3216400a486ccf12b4f0cec59caa SRA:SRR5832876 https://www.encodeproject.org/files/ENCFF221INE/@@download/ENCFF221INE.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF664DYM bam unfiltered alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF102EIG, ENCFF643CGH 2079045636 ENCODE Processing Pipeline cec315ece68d1c9008d9e5bd0f3f6df5 https://www.encodeproject.org/files/ENCFF664DYM/@@download/ENCFF664DYM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF933GIN bam unfiltered alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF221INE, ENCFF643CGH 1747010838 ENCODE Processing Pipeline 9bfc48f1847fed4d6ad46c7b2257b49f https://www.encodeproject.org/files/ENCFF933GIN/@@download/ENCFF933GIN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF226TRN bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF221INE, ENCFF643CGH 1298705502 ENCODE Processing Pipeline be45268f66ff5a89934af28fbe789986 https://www.encodeproject.org/files/ENCFF226TRN/@@download/ENCFF226TRN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF569SUA bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF102EIG, ENCFF643CGH 1678269275 ENCODE Processing Pipeline 70cab526d973f4529c0359aa8e614d13 https://www.encodeproject.org/files/ENCFF569SUA/@@download/ENCFF569SUA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF110YOV bam unfiltered alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF221INE, ENCFF807MUK 1742260313 ENCODE Processing Pipeline fd08cb5bc6439e84d36c6c3ced1ba14d https://www.encodeproject.org/files/ENCFF110YOV/@@download/ENCFF110YOV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF922RIH bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF221INE, ENCFF807MUK 1297314369 ENCODE Processing Pipeline 64d83766f87b00570cfc302453b24229 https://www.encodeproject.org/files/ENCFF922RIH/@@download/ENCFF922RIH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF462BVF bam unfiltered alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF102EIG, ENCFF807MUK 2074032690 ENCODE Processing Pipeline c96a6f6537b82a5ec4e4544be7d1df8b https://www.encodeproject.org/files/ENCFF462BVF/@@download/ENCFF462BVF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF449GDV bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF102EIG, ENCFF807MUK 1676243007 ENCODE Processing Pipeline ac19070432c17e56dd8d099874bd40ec https://www.encodeproject.org/files/ENCFF449GDV/@@download/ENCFF449GDV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF309ZFW bigWig signal p-value ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF569SUA, ENCFF572IKT, ENCFF714AMB 1040875719 ENCODE Processing Pipeline 9bb00b5f3aa9a8c64d1bc1b48ae0e476 https://www.encodeproject.org/files/ENCFF309ZFW/@@download/ENCFF309ZFW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF766IPC bigWig signal p-value ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF226TRN, ENCFF569SUA, ENCFF572IKT, ENCFF714AMB 1233046968 ENCODE Processing Pipeline a006f96314adf9ca20c2de03715c8f29 https://www.encodeproject.org/files/ENCFF766IPC/@@download/ENCFF766IPC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF101XSA bigWig fold change over control ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF569SUA, ENCFF572IKT, ENCFF714AMB 1132466686 ENCODE Processing Pipeline 4b33ba0d8d110171358ee16dcd5aac6e https://www.encodeproject.org/files/ENCFF101XSA/@@download/ENCFF101XSA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF142UVX bigWig signal p-value ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF226TRN, ENCFF572IKT, ENCFF714AMB 1229594169 ENCODE Processing Pipeline f2e749ad94406f4492b9acc036e356d8 https://www.encodeproject.org/files/ENCFF142UVX/@@download/ENCFF142UVX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF647AQV bigBed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF065PMO 13565795 ENCODE Processing Pipeline e11399177336df7dab0518be799bf678 https://www.encodeproject.org/files/ENCFF647AQV/@@download/ENCFF647AQV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF603JLN bigWig fold change over control ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF226TRN, ENCFF569SUA, ENCFF572IKT, ENCFF714AMB 1525218038 ENCODE Processing Pipeline dbd2e16a1d9fdc355ed536502878c9bc https://www.encodeproject.org/files/ENCFF603JLN/@@download/ENCFF603JLN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF065PMO bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF569SUA, ENCFF572IKT, ENCFF714AMB 6286871 ENCODE Processing Pipeline cf658f1e19745851a1920e66602578ee https://www.encodeproject.org/files/ENCFF065PMO/@@download/ENCFF065PMO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF819NAR bigWig fold change over control ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF226TRN, ENCFF572IKT, ENCFF714AMB 1006239676 ENCODE Processing Pipeline 023f4c3871ca388630ceb04755391b30 https://www.encodeproject.org/files/ENCFF819NAR/@@download/ENCFF819NAR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF077PSA bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF226TRN, ENCFF572IKT, ENCFF714AMB 6338708 ENCODE Processing Pipeline 40676990f9d556bf8cf069c6504fd06c https://www.encodeproject.org/files/ENCFF077PSA/@@download/ENCFF077PSA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF687VXQ bigBed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF077PSA 13150317 ENCODE Processing Pipeline d86e4cb1bbfde39b13ac01a12be4fb6f https://www.encodeproject.org/files/ENCFF687VXQ/@@download/ENCFF687VXQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF623TXS bed narrowPeak conservative idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF065PMO, ENCFF077PSA, ENCFF197WOA, ENCFF419RSJ 39070 ENCODE Processing Pipeline 9ba8fe5cc6c93dcae3035d979450923d https://www.encodeproject.org/files/ENCFF623TXS/@@download/ENCFF623TXS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF345QTZ bigBed narrowPeak optimal idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF766YPH 170204 ENCODE Processing Pipeline 3fa5aeb3d3e3796f09749c8325df4787 https://www.encodeproject.org/files/ENCFF345QTZ/@@download/ENCFF345QTZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF197WOA bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF226TRN, ENCFF569SUA, ENCFF572IKT, ENCFF714AMB 7057447 ENCODE Processing Pipeline 0615aae607c2f413be22f1262e7154f4 https://www.encodeproject.org/files/ENCFF197WOA/@@download/ENCFF197WOA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF766YPH bed narrowPeak optimal idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF065PMO, ENCFF077PSA, ENCFF197WOA, ENCFF419RSJ 62456 ENCODE Processing Pipeline 2d99e8383ad573f8bc17962172e3273c https://www.encodeproject.org/files/ENCFF766YPH/@@download/ENCFF766YPH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF952OVC bigBed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF197WOA 13313550 ENCODE Processing Pipeline 5ad58f0d9f9d6c0979620d1521dcf0b6 https://www.encodeproject.org/files/ENCFF952OVC/@@download/ENCFF952OVC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF529TWF bigBed narrowPeak conservative idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF623TXS 132254 ENCODE Processing Pipeline 8a0ce942b9f96b5fd49f30d45565bd72 https://www.encodeproject.org/files/ENCFF529TWF/@@download/ENCFF529TWF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF058GMS bigWig signal p-value ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS 1182052847 ENCODE Processing Pipeline 88107a1c005201c6244cab6ba74f5461 https://www.encodeproject.org/files/ENCFF058GMS/@@download/ENCFF058GMS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF561OOK bigWig signal p-value ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 1148032320 ENCODE Processing Pipeline 01c713d0d253ac2e4e6037f5f80bed23 https://www.encodeproject.org/files/ENCFF561OOK/@@download/ENCFF561OOK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF499JUB bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS 6522303 ENCODE Processing Pipeline 46d6b8fbba19841b6a3d590157fc8f6b https://www.encodeproject.org/files/ENCFF499JUB/@@download/ENCFF499JUB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF644AFC bigWig fold change over control ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 1527620755 ENCODE Processing Pipeline b2d81a90c32191e3491f1743ffa9c25b https://www.encodeproject.org/files/ENCFF644AFC/@@download/ENCFF644AFC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF703IAU bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 7090118 ENCODE Processing Pipeline cb94215779dfa7d255891c998c32b04f https://www.encodeproject.org/files/ENCFF703IAU/@@download/ENCFF703IAU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF725AXM bigWig fold change over control ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS 1126811804 ENCODE Processing Pipeline be1ff2d571682123b0e842d2d1ce2182 https://www.encodeproject.org/files/ENCFF725AXM/@@download/ENCFF725AXM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF962EUZ bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 6364390 ENCODE Processing Pipeline 5e21caba420cbb88768759f206769cc7 https://www.encodeproject.org/files/ENCFF962EUZ/@@download/ENCFF962EUZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF163AMN bigWig signal p-value ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 1358643528 ENCODE Processing Pipeline 52b1573a1317ef4682c0623d6a6f06d8 https://www.encodeproject.org/files/ENCFF163AMN/@@download/ENCFF163AMN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF093XLE bigWig fold change over control ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 1010009220 ENCODE Processing Pipeline 062a481e3684b44cf94a7513f69929bb https://www.encodeproject.org/files/ENCFF093XLE/@@download/ENCFF093XLE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF947AGG bigBed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF499JUB 13483097 ENCODE Processing Pipeline 4fdb0bfd6888aca8156e7bdce2a22e38 https://www.encodeproject.org/files/ENCFF947AGG/@@download/ENCFF947AGG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF409DHX bed narrowPeak conservative idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF499JUB, ENCFF703IAU, ENCFF962EUZ 38307 ENCODE Processing Pipeline 059331b0c0f16321b017f188bc150a39 https://www.encodeproject.org/files/ENCFF409DHX/@@download/ENCFF409DHX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF335STM bigBed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF962EUZ 13108536 ENCODE Processing Pipeline df542678f449217821366b6b33aaa76b https://www.encodeproject.org/files/ENCFF335STM/@@download/ENCFF335STM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF688KEP bigBed narrowPeak optimal idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231RXA 164725 ENCODE Processing Pipeline 6cc431cf12d3fa070c9fb5b529596e68 https://www.encodeproject.org/files/ENCFF688KEP/@@download/ENCFF688KEP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF231RXA bed narrowPeak optimal idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF499JUB, ENCFF703IAU, ENCFF962EUZ 59986 ENCODE Processing Pipeline 16a66ff2bf339cd6013aa949756c8d1e https://www.encodeproject.org/files/ENCFF231RXA/@@download/ENCFF231RXA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF309VDV bigBed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF703IAU 13240763 ENCODE Processing Pipeline 7698e21e3e55ef1bdf5e3f631ccc0f79 https://www.encodeproject.org/files/ENCFF309VDV/@@download/ENCFF309VDV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF250YFD bigBed narrowPeak conservative idr thresholded peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF409DHX 129584 ENCODE Processing Pipeline 02b8f2b850b26d0430a52cff91e902da https://www.encodeproject.org/files/ENCFF250YFD/@@download/ENCFF250YFD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF900GWI bam unfiltered alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 100 ENCFF228FHJ, ENCFF707YZN, ENCFF807MUK 5696446741 ENCODE Processing Pipeline ec422b537516f778985d1219b2de1b43 https://www.encodeproject.org/files/ENCFF900GWI/@@download/ENCFF900GWI.bam hg19 released borderline replicate concordance ENCFF875XQU bam unfiltered alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 100 ENCFF296LZL, ENCFF352YZE, ENCFF807MUK 5241239779 ENCODE Processing Pipeline 1b2227999e454ac320ae29c4d46676d5 https://www.encodeproject.org/files/ENCFF875XQU/@@download/ENCFF875XQU.bam hg19 released borderline replicate concordance ENCFF296LZL fastq reads ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF352YZE 2367432077 Michael Snyder, Stanford f372d5cba585f350a6ec8252ed96af89 SRA:SRR5111093 https://www.encodeproject.org/files/ENCFF296LZL/@@download/ENCFF296LZL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance ENCFF707YZN fastq reads ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF228FHJ 2583108248 Michael Snyder, Stanford dadb0c7697c038ccc5e8c14d8e4eba2f SRA:SRR5111094 https://www.encodeproject.org/files/ENCFF707YZN/@@download/ENCFF707YZN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance ENCFF228FHJ fastq reads ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF707YZN 2554351269 Michael Snyder, Stanford 99547ea80af064f584f5146c7f4b5935 SRA:SRR5111094 https://www.encodeproject.org/files/ENCFF228FHJ/@@download/ENCFF228FHJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance ENCFF352YZE fastq reads ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF296LZL 2347683397 Michael Snyder, Stanford 39d697704bff54ce164193eeed0e6e54 SRA:SRR5111093 https://www.encodeproject.org/files/ENCFF352YZE/@@download/ENCFF352YZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance ENCFF325QBB bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 100 ENCFF296LZL, ENCFF352YZE, ENCFF807MUK 4249795472 ENCODE Processing Pipeline f35812b0e20f5801b474cca51ac175c4 https://www.encodeproject.org/files/ENCFF325QBB/@@download/ENCFF325QBB.bam hg19 released borderline replicate concordance ENCFF419MUD bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 100 ENCFF228FHJ, ENCFF707YZN, ENCFF807MUK 4572296490 ENCODE Processing Pipeline cf755362b81866372d84dfd233607a47 https://www.encodeproject.org/files/ENCFF419MUD/@@download/ENCFF419MUD.bam hg19 released borderline replicate concordance ENCFF524RPU bigWig signal p-value ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF325QBB, ENCFF419MUD, ENCFF449NNE, ENCFF999EQI 1838054200 ENCODE Processing Pipeline f064679fadb6d0de6d9aab3a59ffa7ff https://www.encodeproject.org/files/ENCFF524RPU/@@download/ENCFF524RPU.bigWig hg19 released borderline replicate concordance ENCFF276VWU bigWig signal p-value ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF419MUD, ENCFF449NNE 1082456168 ENCODE Processing Pipeline 638887b7ba748f3c08787b5c9d249fe1 https://www.encodeproject.org/files/ENCFF276VWU/@@download/ENCFF276VWU.bigWig hg19 released borderline replicate concordance ENCFF690NAM bigWig signal p-value ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF325QBB, ENCFF999EQI 905248467 ENCODE Processing Pipeline 00e50848f29217970a8da42e3aa561ff https://www.encodeproject.org/files/ENCFF690NAM/@@download/ENCFF690NAM.bigWig hg19 released borderline replicate concordance ENCFF150NUF bigWig fold change over control ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF419MUD, ENCFF449NNE 1208579435 ENCODE Processing Pipeline f527e1c01f721402082eaef6405bd6d3 https://www.encodeproject.org/files/ENCFF150NUF/@@download/ENCFF150NUF.bigWig hg19 released borderline replicate concordance ENCFF738VJM bigWig fold change over control ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF325QBB, ENCFF999EQI 1038223038 ENCODE Processing Pipeline 2877f7868a04574254a7153b8eeaf6eb https://www.encodeproject.org/files/ENCFF738VJM/@@download/ENCFF738VJM.bigWig hg19 released borderline replicate concordance ENCFF773TRV bigWig fold change over control ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF325QBB, ENCFF419MUD, ENCFF449NNE, ENCFF999EQI 2034228620 ENCODE Processing Pipeline 512a8f149feb8279062ac5e406c5ef73 https://www.encodeproject.org/files/ENCFF773TRV/@@download/ENCFF773TRV.bigWig hg19 released borderline replicate concordance ENCFF633UOS bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF419MUD, ENCFF449NNE 6103939 ENCODE Processing Pipeline 6a7cabd59ae7db8ffb1490e16d9248ea https://www.encodeproject.org/files/ENCFF633UOS/@@download/ENCFF633UOS.bed.gz hg19 released borderline replicate concordance ENCFF241WWS bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF325QBB, ENCFF419MUD, ENCFF449NNE, ENCFF999EQI 7036558 ENCODE Processing Pipeline c9f251421e509ad8ee8291105074bd5f https://www.encodeproject.org/files/ENCFF241WWS/@@download/ENCFF241WWS.bed.gz hg19 released borderline replicate concordance ENCFF377TYD bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF325QBB, ENCFF999EQI 6091677 ENCODE Processing Pipeline a80364c030ea66fb2f5746a443860535 https://www.encodeproject.org/files/ENCFF377TYD/@@download/ENCFF377TYD.bed.gz hg19 released borderline replicate concordance ENCFF031VTR bigBed narrowPeak optimal idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF681NJT 286570 ENCODE Processing Pipeline deece29a81f75138775d950b46c782e7 https://www.encodeproject.org/files/ENCFF031VTR/@@download/ENCFF031VTR.bigBed hg19 released borderline replicate concordance ENCFF353OUV bed narrowPeak conservative idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF241WWS, ENCFF377TYD, ENCFF633UOS 75092 ENCODE Processing Pipeline f83c58eb7f19230e9cb1e7eebb68233f https://www.encodeproject.org/files/ENCFF353OUV/@@download/ENCFF353OUV.bed.gz hg19 released borderline replicate concordance ENCFF912LQP bigBed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF377TYD 11357898 ENCODE Processing Pipeline ace5902e50ca5cbf58d895cb11c8192c https://www.encodeproject.org/files/ENCFF912LQP/@@download/ENCFF912LQP.bigBed hg19 released borderline replicate concordance ENCFF019NIH bigBed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF633UOS 11269350 ENCODE Processing Pipeline 874ba523c594cce97dbf32bd52875edb https://www.encodeproject.org/files/ENCFF019NIH/@@download/ENCFF019NIH.bigBed hg19 released borderline replicate concordance ENCFF326KLE bigBed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF241WWS 11346852 ENCODE Processing Pipeline 1c9cc4fc1c92e3f2dfe1067fa1d15750 https://www.encodeproject.org/files/ENCFF326KLE/@@download/ENCFF326KLE.bigBed hg19 released borderline replicate concordance ENCFF840MPB bigBed narrowPeak conservative idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF353OUV 193554 ENCODE Processing Pipeline daeb1eab110c017e0162d101cc704b46 https://www.encodeproject.org/files/ENCFF840MPB/@@download/ENCFF840MPB.bigBed hg19 released borderline replicate concordance ENCFF681NJT bed narrowPeak optimal idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF241WWS, ENCFF377TYD, ENCFF633UOS 141962 ENCODE Processing Pipeline 02243fd2b0803e92a3cdaaa90f1f9c18 https://www.encodeproject.org/files/ENCFF681NJT/@@download/ENCFF681NJT.bed.gz hg19 released borderline replicate concordance ENCFF389GRV bam unfiltered alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 100 ENCFF296LZL, ENCFF352YZE, ENCFF643CGH 5249645442 ENCODE Processing Pipeline 63670eb8a60512f18fe5b4e339360bfd https://www.encodeproject.org/files/ENCFF389GRV/@@download/ENCFF389GRV.bam GRCh38 released borderline replicate concordance ENCFF360DVN bam unfiltered alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 100 ENCFF228FHJ, ENCFF643CGH, ENCFF707YZN 5706360591 ENCODE Processing Pipeline d1e3b61a198de7cca85ac422ce565b49 https://www.encodeproject.org/files/ENCFF360DVN/@@download/ENCFF360DVN.bam GRCh38 released borderline replicate concordance ENCFF451NTQ bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 100 ENCFF296LZL, ENCFF352YZE, ENCFF643CGH 4261573065 ENCODE Processing Pipeline 4d46ed9e7b82de1230ceeecde2e3422d https://www.encodeproject.org/files/ENCFF451NTQ/@@download/ENCFF451NTQ.bam GRCh38 released borderline replicate concordance ENCFF304JKT bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 100 ENCFF228FHJ, ENCFF643CGH, ENCFF707YZN 4586116987 ENCODE Processing Pipeline c395dfc21534eb3c61809d2ddfe7e170 https://www.encodeproject.org/files/ENCFF304JKT/@@download/ENCFF304JKT.bam GRCh38 released borderline replicate concordance ENCFF960TQX bigWig signal p-value ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF190EPQ, ENCFF304JKT 1006819311 ENCODE Processing Pipeline 8ccd723b2dff61807d84ff795fc799d7 https://www.encodeproject.org/files/ENCFF960TQX/@@download/ENCFF960TQX.bigWig GRCh38 released borderline replicate concordance ENCFF432DVS bigWig signal p-value ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF451NTQ, ENCFF950AXC 900014662 ENCODE Processing Pipeline 85238ae1f36ed738032633865f602bd2 https://www.encodeproject.org/files/ENCFF432DVS/@@download/ENCFF432DVS.bigWig GRCh38 released borderline replicate concordance ENCFF974ISH bigWig signal p-value ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF304JKT, ENCFF451NTQ, ENCFF950AXC 1834276808 ENCODE Processing Pipeline a6c5c2bb6b1ad48fa2cc5f6affcca512 https://www.encodeproject.org/files/ENCFF974ISH/@@download/ENCFF974ISH.bigWig GRCh38 released borderline replicate concordance ENCFF807BMN bigWig fold change over control ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF190EPQ, ENCFF304JKT 1205006594 ENCODE Processing Pipeline 7b1c36dcc881c518e79cc1c7346a0d01 https://www.encodeproject.org/files/ENCFF807BMN/@@download/ENCFF807BMN.bigWig GRCh38 released borderline replicate concordance ENCFF986NXB bigWig fold change over control ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF451NTQ, ENCFF950AXC 1059021985 ENCODE Processing Pipeline 2dde251f13e4155e75ac5422a0f32029 https://www.encodeproject.org/files/ENCFF986NXB/@@download/ENCFF986NXB.bigWig GRCh38 released borderline replicate concordance ENCFF133RYX bigWig fold change over control ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF304JKT, ENCFF451NTQ, ENCFF950AXC 2010674240 ENCODE Processing Pipeline adb049d9c02ccb3cceea623768a9d9bc https://www.encodeproject.org/files/ENCFF133RYX/@@download/ENCFF133RYX.bigWig GRCh38 released borderline replicate concordance ENCFF551OTQ bigBed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF574QHP 11359459 ENCODE Processing Pipeline 69724144d4e774ab17c15dd7e0868b2a https://www.encodeproject.org/files/ENCFF551OTQ/@@download/ENCFF551OTQ.bigBed GRCh38 released borderline replicate concordance ENCFF574QHP bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF304JKT, ENCFF451NTQ, ENCFF950AXC 6964617 ENCODE Processing Pipeline b208b61142e10ce6781e5ca6972978d9 https://www.encodeproject.org/files/ENCFF574QHP/@@download/ENCFF574QHP.bed.gz GRCh38 released borderline replicate concordance ENCFF392PBU bigBed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF536CCI 11273565 ENCODE Processing Pipeline c4fc118cfb9eed8d3c27f010155de697 https://www.encodeproject.org/files/ENCFF392PBU/@@download/ENCFF392PBU.bigBed GRCh38 released borderline replicate concordance ENCFF536CCI bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF190EPQ, ENCFF304JKT 5941207 ENCODE Processing Pipeline 81961b3868de5a130a6b0bf80cb05eaf https://www.encodeproject.org/files/ENCFF536CCI/@@download/ENCFF536CCI.bed.gz GRCh38 released borderline replicate concordance ENCFF688OYH bigBed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF372IYP 11372375 ENCODE Processing Pipeline e90191cfeb165e800133b291fdf126d4 https://www.encodeproject.org/files/ENCFF688OYH/@@download/ENCFF688OYH.bigBed GRCh38 released borderline replicate concordance ENCFF372IYP bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF451NTQ, ENCFF950AXC 5962669 ENCODE Processing Pipeline 6299cce6a2f3dd70dbe74bc667da10e1 https://www.encodeproject.org/files/ENCFF372IYP/@@download/ENCFF372IYP.bed.gz GRCh38 released borderline replicate concordance ENCFF536UXA bed narrowPeak conservative idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF372IYP, ENCFF419RSJ, ENCFF536CCI, ENCFF574QHP 75715 ENCODE Processing Pipeline 7ebe2251969a86f89771eee2924c00ae https://www.encodeproject.org/files/ENCFF536UXA/@@download/ENCFF536UXA.bed.gz GRCh38 released borderline replicate concordance ENCFF670MML bigBed narrowPeak optimal idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF859MBC 291824 ENCODE Processing Pipeline fa84720142097026d7d800c223534ad9 https://www.encodeproject.org/files/ENCFF670MML/@@download/ENCFF670MML.bigBed GRCh38 released borderline replicate concordance ENCFF859MBC bed narrowPeak optimal idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF372IYP, ENCFF419RSJ, ENCFF536CCI, ENCFF574QHP 142414 ENCODE Processing Pipeline 343dc6b735087e5daec2f11831d09adc https://www.encodeproject.org/files/ENCFF859MBC/@@download/ENCFF859MBC.bed.gz GRCh38 released borderline replicate concordance ENCFF724EXU bigBed narrowPeak conservative idr thresholded peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF536UXA 197213 ENCODE Processing Pipeline 3c1596e11904c7700115d903d5cbe6fe https://www.encodeproject.org/files/ENCFF724EXU/@@download/ENCFF724EXU.bigBed GRCh38 released borderline replicate concordance ENCFF061JFJ bam unfiltered alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF343MJV, ENCFF401WRN, ENCFF807MUK 1420654596 ENCODE Processing Pipeline ad9be3a863740ab1006213eada1635ff https://www.encodeproject.org/files/ENCFF061JFJ/@@download/ENCFF061JFJ.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF503XEJ bam unfiltered alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF304WBQ, ENCFF584XMP, ENCFF807MUK 1575433623 ENCODE Processing Pipeline 68afb3a3361c52ea9f0e211ea2f8e61b https://www.encodeproject.org/files/ENCFF503XEJ/@@download/ENCFF503XEJ.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF584XMP fastq reads ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 525460311 Kevin White, UChicago 6417165783b7e43f88b1254e35fd7ae5 SRA:SRR6213256 https://www.encodeproject.org/files/ENCFF584XMP/@@download/ENCFF584XMP.fastq.gz Illumina HiSeq 2000 /files/ENCFF053XWI/, /files/ENCFF563LBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF343MJV fastq reads ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 679450259 Kevin White, UChicago aa1a561056150778dfda9b6254a52e0b SRA:SRR6213258 https://www.encodeproject.org/files/ENCFF343MJV/@@download/ENCFF343MJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF053XWI/, /files/ENCFF563LBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF304WBQ fastq reads ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 939587449 Kevin White, UChicago ee34ec3987825e4bdaecaca7d0235fa8 SRA:SRR6213257 https://www.encodeproject.org/files/ENCFF304WBQ/@@download/ENCFF304WBQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF053XWI/, /files/ENCFF563LBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF401WRN fastq reads ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 837472161 Kevin White, UChicago 8ee90f768e998e5193343e2dcf338e99 SRA:SRR6213259 https://www.encodeproject.org/files/ENCFF401WRN/@@download/ENCFF401WRN.fastq.gz Illumina HiSeq 2500 /files/ENCFF053XWI/, /files/ENCFF563LBV/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF087PBL bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF343MJV, ENCFF401WRN, ENCFF807MUK 608904003 ENCODE Processing Pipeline c65bdd6933cca435de5d09c0e6cd0941 https://www.encodeproject.org/files/ENCFF087PBL/@@download/ENCFF087PBL.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF169QDL bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF304WBQ, ENCFF584XMP, ENCFF807MUK 1161010033 ENCODE Processing Pipeline 0a590f5363f871aea0deed63407a14c6 https://www.encodeproject.org/files/ENCFF169QDL/@@download/ENCFF169QDL.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF018BVJ bigWig signal p-value ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF087PBL, ENCFF676IWT 587676732 ENCODE Processing Pipeline 9a488e45c8a1f15de10c05bbfd44086c https://www.encodeproject.org/files/ENCFF018BVJ/@@download/ENCFF018BVJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF127QKZ bigWig signal p-value ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF169QDL, ENCFF676IWT 606640293 ENCODE Processing Pipeline 60afc111759d51c7bf83ede17ba32263 https://www.encodeproject.org/files/ENCFF127QKZ/@@download/ENCFF127QKZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF125NEV bigWig signal p-value ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF087PBL, ENCFF169QDL, ENCFF676IWT 854099843 ENCODE Processing Pipeline 5d81e09f601dae9521c81a2cd95c2a2e https://www.encodeproject.org/files/ENCFF125NEV/@@download/ENCFF125NEV.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF127PIZ bigWig fold change over control ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF087PBL, ENCFF676IWT 349863634 ENCODE Processing Pipeline 7d79a02cd894d3fcffbf34d941e5620e https://www.encodeproject.org/files/ENCFF127PIZ/@@download/ENCFF127PIZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF059JRA bigWig fold change over control ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF169QDL, ENCFF676IWT 551573056 ENCODE Processing Pipeline 3e92e06f6e3cefb232eadc8b9e157264 https://www.encodeproject.org/files/ENCFF059JRA/@@download/ENCFF059JRA.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF909WFI bigWig fold change over control ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF087PBL, ENCFF169QDL, ENCFF676IWT 845264668 ENCODE Processing Pipeline 4b668c2e8bcae8993bf04636843badeb https://www.encodeproject.org/files/ENCFF909WFI/@@download/ENCFF909WFI.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF326GRX bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF087PBL, ENCFF676IWT 5304151 ENCODE Processing Pipeline 3b269d301b73987c640ea660037912bf https://www.encodeproject.org/files/ENCFF326GRX/@@download/ENCFF326GRX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF571JFL bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF087PBL, ENCFF169QDL, ENCFF676IWT 6930030 ENCODE Processing Pipeline ec0ec6c569ddfb58086ec99ed75db957 https://www.encodeproject.org/files/ENCFF571JFL/@@download/ENCFF571JFL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF358OVY bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF169QDL, ENCFF676IWT 6259823 ENCODE Processing Pipeline 15e2f932dc293fcb2bc94be182ced32e https://www.encodeproject.org/files/ENCFF358OVY/@@download/ENCFF358OVY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF152NFP bigBed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF326GRX 13208465 ENCODE Processing Pipeline 97418219279b3b111217c2c6c77f0879 https://www.encodeproject.org/files/ENCFF152NFP/@@download/ENCFF152NFP.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF049LDE bigBed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF358OVY 13268459 ENCODE Processing Pipeline e185e1365da6b28cd92d9862d3c5fb70 https://www.encodeproject.org/files/ENCFF049LDE/@@download/ENCFF049LDE.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF377NAK bigBed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF571JFL 13342404 ENCODE Processing Pipeline 808438d800e677087175b390b0f6a2cb https://www.encodeproject.org/files/ENCFF377NAK/@@download/ENCFF377NAK.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF544KGC bam unfiltered alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF304WBQ, ENCFF584XMP, ENCFF643CGH 1582673403 ENCODE Processing Pipeline 3094c6504aef50af2326c5bf7dbb47eb https://www.encodeproject.org/files/ENCFF544KGC/@@download/ENCFF544KGC.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF403JAH bam unfiltered alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF343MJV, ENCFF401WRN, ENCFF643CGH 1424689952 ENCODE Processing Pipeline 2235d7b55c7ce7049c57b0000af3a87a https://www.encodeproject.org/files/ENCFF403JAH/@@download/ENCFF403JAH.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF603DLZ bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF343MJV, ENCFF401WRN, ENCFF643CGH 608591915 ENCODE Processing Pipeline bdc3246e761f3c09977d2d26ee286a77 https://www.encodeproject.org/files/ENCFF603DLZ/@@download/ENCFF603DLZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF034JFG bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF304WBQ, ENCFF584XMP, ENCFF643CGH 1160749551 ENCODE Processing Pipeline b8fcde3e4df65b7cce7cd9ad4b43db42 https://www.encodeproject.org/files/ENCFF034JFG/@@download/ENCFF034JFG.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF015BTV bigWig signal p-value ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF034JFG, ENCFF156EDZ, ENCFF603DLZ 838166856 ENCODE Processing Pipeline bf92fcee38e6cffcdcb5c2275629e4c3 https://www.encodeproject.org/files/ENCFF015BTV/@@download/ENCFF015BTV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF602GDN bigWig fold change over control ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF156EDZ, ENCFF603DLZ 325639963 ENCODE Processing Pipeline 20497bdb59b4590842cf0c688a5030b6 https://www.encodeproject.org/files/ENCFF602GDN/@@download/ENCFF602GDN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF538KWV bigWig signal p-value ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF156EDZ, ENCFF603DLZ 548703339 ENCODE Processing Pipeline 7573dfe2a355c6f14e2bc7dc70a78191 https://www.encodeproject.org/files/ENCFF538KWV/@@download/ENCFF538KWV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF915RMN bigWig signal p-value ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF034JFG, ENCFF156EDZ 747798656 ENCODE Processing Pipeline 28c62dc72272e79212d6960bb896af5b https://www.encodeproject.org/files/ENCFF915RMN/@@download/ENCFF915RMN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF018FWC bigWig fold change over control ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF034JFG, ENCFF156EDZ 521045246 ENCODE Processing Pipeline 74fc0b0efbe46ada31206273912c83f6 https://www.encodeproject.org/files/ENCFF018FWC/@@download/ENCFF018FWC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF724FPR bigWig fold change over control ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF034JFG, ENCFF156EDZ, ENCFF603DLZ 832949077 ENCODE Processing Pipeline 55b445f69cbe499819e06a1e44841af8 https://www.encodeproject.org/files/ENCFF724FPR/@@download/ENCFF724FPR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF825LXL bigBed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF872LJF 13428181 ENCODE Processing Pipeline 79a855db49356a8e0a3ead925d7e5053 https://www.encodeproject.org/files/ENCFF825LXL/@@download/ENCFF825LXL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF872LJF bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF034JFG, ENCFF156EDZ, ENCFF603DLZ 6568548 ENCODE Processing Pipeline 19b370139022e8a28bd6f8961ec43320 https://www.encodeproject.org/files/ENCFF872LJF/@@download/ENCFF872LJF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF644ILX bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF034JFG, ENCFF156EDZ 5666594 ENCODE Processing Pipeline c855755cd7249338f3b0dbbb620b8b07 https://www.encodeproject.org/files/ENCFF644ILX/@@download/ENCFF644ILX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF788JHE bigBed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF644ILX 13310013 ENCODE Processing Pipeline 22f53a7ccab9c4d3254d0efcc340e57e https://www.encodeproject.org/files/ENCFF788JHE/@@download/ENCFF788JHE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF326BLH bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF156EDZ, ENCFF603DLZ 4873440 ENCODE Processing Pipeline dcbdd9ee5cc39e21194c957094f89d8b https://www.encodeproject.org/files/ENCFF326BLH/@@download/ENCFF326BLH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF909KOC bigBed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF326BLH 10953560 ENCODE Processing Pipeline e1638f41a12559bc2f512d1ef229610c https://www.encodeproject.org/files/ENCFF909KOC/@@download/ENCFF909KOC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF326GOB bed narrowPeak conservative idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF326BLH, ENCFF419RSJ, ENCFF644ILX, ENCFF872LJF 22095 ENCODE Processing Pipeline 97878511f48b7fefb7c41e33850dbd50 https://www.encodeproject.org/files/ENCFF326GOB/@@download/ENCFF326GOB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF638AFL bigBed narrowPeak conservative idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF326GOB 119361 ENCODE Processing Pipeline 812e8893eafff6a52ecfb12097f7ffc7 https://www.encodeproject.org/files/ENCFF638AFL/@@download/ENCFF638AFL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF499LWI bigBed narrowPeak optimal idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF364HWG 104611 ENCODE Processing Pipeline 71673b2b2c7fc4a21945bcd9302a2f31 https://www.encodeproject.org/files/ENCFF499LWI/@@download/ENCFF499LWI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF364HWG bed narrowPeak optimal idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF326BLH, ENCFF419RSJ, ENCFF644ILX, ENCFF872LJF 22149 ENCODE Processing Pipeline 0585e966e25083aed7869c2086f77f7e https://www.encodeproject.org/files/ENCFF364HWG/@@download/ENCFF364HWG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF380YXW bigBed narrowPeak conservative idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF497FYC 82616 ENCODE Processing Pipeline 95466cfd10339c2b8cb811027f827c28 https://www.encodeproject.org/files/ENCFF380YXW/@@download/ENCFF380YXW.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF757NYX bigBed narrowPeak optimal idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF976CLA 84783 ENCODE Processing Pipeline 7601f5c5e0fe8a9e06f3a2bb72eafeff https://www.encodeproject.org/files/ENCFF757NYX/@@download/ENCFF757NYX.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF497FYC bed narrowPeak conservative idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF326GRX, ENCFF358OVY, ENCFF571JFL 17984 ENCODE Processing Pipeline 7839f19bacd84fa089190d46008be4ca https://www.encodeproject.org/files/ENCFF497FYC/@@download/ENCFF497FYC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF976CLA bed narrowPeak optimal idr thresholded peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF326GRX, ENCFF358OVY, ENCFF571JFL 19150 ENCODE Processing Pipeline 44b88f2140b1d4a9e63274fa6244f873 https://www.encodeproject.org/files/ENCFF976CLA/@@download/ENCFF976CLA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF632WAT fastq reads ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF032PDB 3308944018 Michael Snyder, Stanford 1092a799a3a08c2f639bd69fbd828388 https://www.encodeproject.org/files/ENCFF632WAT/@@download/ENCFF632WAT.fastq.gz Illumina HiSeq 4000 /files/ENCFF886BMC/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF032PDB fastq reads ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF632WAT 2819837065 Michael Snyder, Stanford 9430329c34a1123312ea0f7a21291bdd https://www.encodeproject.org/files/ENCFF032PDB/@@download/ENCFF032PDB.fastq.gz Illumina HiSeq 4000 /files/ENCFF633HXG/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF200MZP bam unfiltered alignments ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF032PDB, ENCFF632WAT, ENCFF643CGH 4995604516 ENCODE Processing Pipeline 344862baf6684b8bc81a1ce08e1f8856 https://www.encodeproject.org/files/ENCFF200MZP/@@download/ENCFF200MZP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF496WKU bam alignments ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF032PDB, ENCFF632WAT, ENCFF643CGH 2578766875 ENCODE Processing Pipeline d8fa2d9a85e4de5287ae2eb0a1217609 https://www.encodeproject.org/files/ENCFF496WKU/@@download/ENCFF496WKU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF342DPZ bam unfiltered alignments ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF032PDB, ENCFF632WAT, ENCFF807MUK 4999927178 ENCODE Processing Pipeline becab1adecb5476370ab6fcff0be6d6f https://www.encodeproject.org/files/ENCFF342DPZ/@@download/ENCFF342DPZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF118IIC bam alignments ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF032PDB, ENCFF632WAT, ENCFF807MUK 2577463431 ENCODE Processing Pipeline 437520430fa7bde37b07bcadd173559e https://www.encodeproject.org/files/ENCFF118IIC/@@download/ENCFF118IIC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF270SAL fastq reads ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF861EEE 2558721446 Michael Snyder, Stanford f09a39e1303dac8b6bb5540938ab0789 https://www.encodeproject.org/files/ENCFF270SAL/@@download/ENCFF270SAL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF930PKX fastq reads ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF916BZF 2201821722 Michael Snyder, Stanford 922645a2bb3012f439161918fcc70662 https://www.encodeproject.org/files/ENCFF930PKX/@@download/ENCFF930PKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF916BZF fastq reads ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF930PKX 2227788459 Michael Snyder, Stanford f939059b64c09da3952d208542366caa https://www.encodeproject.org/files/ENCFF916BZF/@@download/ENCFF916BZF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF861EEE fastq reads ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF270SAL 2621624422 Michael Snyder, Stanford 1ac3e80747136c68abcec3529b73fbf5 https://www.encodeproject.org/files/ENCFF861EEE/@@download/ENCFF861EEE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF411CES bam unfiltered alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF807MUK, ENCFF916BZF, ENCFF930PKX 4630453263 ENCODE Processing Pipeline c8291d7a677811c88c558d9f4002ac54 https://www.encodeproject.org/files/ENCFF411CES/@@download/ENCFF411CES.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF326QVR bam unfiltered alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF916BZF, ENCFF930PKX 4632415199 ENCODE Processing Pipeline a733b37f9bbeb0b0c29c0e4c98d0ba29 https://www.encodeproject.org/files/ENCFF326QVR/@@download/ENCFF326QVR.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF391WXJ bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF270SAL, ENCFF807MUK, ENCFF861EEE 4064617451 ENCODE Processing Pipeline afff81ef6a6ed9a8fbf0a3e7d2ba7398 https://www.encodeproject.org/files/ENCFF391WXJ/@@download/ENCFF391WXJ.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF754VWZ bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF916BZF, ENCFF930PKX 3488344098 ENCODE Processing Pipeline 3b67a71bda02c1d93a252e4aa8f83b2c https://www.encodeproject.org/files/ENCFF754VWZ/@@download/ENCFF754VWZ.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF679BPE bam unfiltered alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF270SAL, ENCFF807MUK, ENCFF861EEE 5386868847 ENCODE Processing Pipeline 69c5a91e147b2328a9cc7a405bce1913 https://www.encodeproject.org/files/ENCFF679BPE/@@download/ENCFF679BPE.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF345IKW bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF807MUK, ENCFF916BZF, ENCFF930PKX 3485644084 ENCODE Processing Pipeline ff0776a57afdd555c9ea2f839036b821 https://www.encodeproject.org/files/ENCFF345IKW/@@download/ENCFF345IKW.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF906SMP bam unfiltered alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF270SAL, ENCFF643CGH, ENCFF861EEE 5389434655 ENCODE Processing Pipeline b70a730793999f08d01bef455ec86c2a https://www.encodeproject.org/files/ENCFF906SMP/@@download/ENCFF906SMP.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF715GHX bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF270SAL, ENCFF643CGH, ENCFF861EEE 4067719360 ENCODE Processing Pipeline 616fffc7f57d0dff8134f147428b41eb https://www.encodeproject.org/files/ENCFF715GHX/@@download/ENCFF715GHX.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF896HNZ bigWig fold change over control ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF715GHX, ENCFF910IKB 1158159262 ENCODE Processing Pipeline 0491910d3a93cda4c7a8bd785c2b2a02 https://www.encodeproject.org/files/ENCFF896HNZ/@@download/ENCFF896HNZ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF589TBG bigWig fold change over control ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF754VWZ 1041648078 ENCODE Processing Pipeline 44251b0e9300dee4499f87cbfd35fea8 https://www.encodeproject.org/files/ENCFF589TBG/@@download/ENCFF589TBG.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF447DHW bigWig signal p-value ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF754VWZ 952340027 ENCODE Processing Pipeline 2bb077c3b7dd3733aec9ac495b695b56 https://www.encodeproject.org/files/ENCFF447DHW/@@download/ENCFF447DHW.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF777OFZ bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF715GHX, ENCFF910IKB 6872556 ENCODE Processing Pipeline cfd6438ee555ec73d62479525fe258ca https://www.encodeproject.org/files/ENCFF777OFZ/@@download/ENCFF777OFZ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF937MNZ bigWig signal p-value ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF715GHX, ENCFF910IKB 1008540831 ENCODE Processing Pipeline 6f0e783f9ce898257358e057cba3506a https://www.encodeproject.org/files/ENCFF937MNZ/@@download/ENCFF937MNZ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF813NGW bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF715GHX, ENCFF754VWZ, ENCFF910IKB 7229209 ENCODE Processing Pipeline 05874a3930e2093a12ffcd28dd630d91 https://www.encodeproject.org/files/ENCFF813NGW/@@download/ENCFF813NGW.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF036GKQ bigBed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF813NGW 12928175 ENCODE Processing Pipeline 923e15bf31546d96047d4d9975891f18 https://www.encodeproject.org/files/ENCFF036GKQ/@@download/ENCFF036GKQ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF009PKA bigBed narrowPeak optimal idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF489SKQ 739518 ENCODE Processing Pipeline 20de2d32227f6a3902470d2db130b4b6 https://www.encodeproject.org/files/ENCFF009PKA/@@download/ENCFF009PKA.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF498STE bigWig signal p-value ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF715GHX, ENCFF754VWZ, ENCFF910IKB 1843209530 ENCODE Processing Pipeline 2d8942d41c96e9f2c4dbd93ed03bed9e https://www.encodeproject.org/files/ENCFF498STE/@@download/ENCFF498STE.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF635SVV bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF754VWZ 6642415 ENCODE Processing Pipeline 68a27e834aea65758445b2d31e56b855 https://www.encodeproject.org/files/ENCFF635SVV/@@download/ENCFF635SVV.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF368AZA bigWig fold change over control ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF715GHX, ENCFF754VWZ, ENCFF910IKB 2026266548 ENCODE Processing Pipeline 83a079dd61fb01a3f5b227be6bad7afa https://www.encodeproject.org/files/ENCFF368AZA/@@download/ENCFF368AZA.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF296OTQ bigBed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF777OFZ 13145337 ENCODE Processing Pipeline 43d28e827a2a95dc01f68a8aaf8106c3 https://www.encodeproject.org/files/ENCFF296OTQ/@@download/ENCFF296OTQ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF646AZP bed narrowPeak conservative idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF635SVV, ENCFF777OFZ, ENCFF813NGW 256530 ENCODE Processing Pipeline 896e24ffc5e7f1fd2758b52bc8c25dee https://www.encodeproject.org/files/ENCFF646AZP/@@download/ENCFF646AZP.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF535OZO bigBed narrowPeak conservative idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF646AZP 572919 ENCODE Processing Pipeline aa8bbaa01aa577c42b0fd1d164e0c337 https://www.encodeproject.org/files/ENCFF535OZO/@@download/ENCFF535OZO.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF489SKQ bed narrowPeak optimal idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF635SVV, ENCFF777OFZ, ENCFF813NGW 358546 ENCODE Processing Pipeline fddc0e3b44e6576405197755d02fa83a https://www.encodeproject.org/files/ENCFF489SKQ/@@download/ENCFF489SKQ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF438BVV bigBed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF635SVV 13152197 ENCODE Processing Pipeline 2ee84def99d99e5bbdb0f40d592504f7 https://www.encodeproject.org/files/ENCFF438BVV/@@download/ENCFF438BVV.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF076WXV bigWig signal p-value ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF345IKW, ENCFF391WXJ, ENCFF581ZJL 1829874086 ENCODE Processing Pipeline 3b1355fad7fc3774c2337a9cf09a2cfb https://www.encodeproject.org/files/ENCFF076WXV/@@download/ENCFF076WXV.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF653QLK bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF345IKW, ENCFF391WXJ, ENCFF581ZJL 7224054 ENCODE Processing Pipeline 15ad048ac2ac50648143c494a23ae8eb https://www.encodeproject.org/files/ENCFF653QLK/@@download/ENCFF653QLK.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF547VER bigBed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF653QLK 12913909 ENCODE Processing Pipeline 2cf3a21bfc898451e16c539222d54009 https://www.encodeproject.org/files/ENCFF547VER/@@download/ENCFF547VER.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF176SLT bigWig signal p-value ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF391WXJ, ENCFF581ZJL 983681933 ENCODE Processing Pipeline 48a87035b57e1f9812d0268e8b25eec5 https://www.encodeproject.org/files/ENCFF176SLT/@@download/ENCFF176SLT.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF689PVL bigWig fold change over control ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF391WXJ, ENCFF581ZJL 1156779600 ENCODE Processing Pipeline b0ffe0b2e8603a6eb4007904016e8ac8 https://www.encodeproject.org/files/ENCFF689PVL/@@download/ENCFF689PVL.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF306ZWZ bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF391WXJ, ENCFF581ZJL 6898277 ENCODE Processing Pipeline a7291abb982198f7a84b1f6a90cf8769 https://www.encodeproject.org/files/ENCFF306ZWZ/@@download/ENCFF306ZWZ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF282AQD bigWig fold change over control ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF345IKW 1041056879 ENCODE Processing Pipeline 3e3addc9ccea79abaca443a3bff110e7 https://www.encodeproject.org/files/ENCFF282AQD/@@download/ENCFF282AQD.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF466GTG bed narrowPeak conservative idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF306ZWZ, ENCFF413ETF, ENCFF653QLK 256550 ENCODE Processing Pipeline e51628e78bf2f400e6b4a24cd9ee0f61 https://www.encodeproject.org/files/ENCFF466GTG/@@download/ENCFF466GTG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF214FDS bigWig signal p-value ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF345IKW 936120658 ENCODE Processing Pipeline 6cb294ba0cd9b08fb6c1e689330059ed https://www.encodeproject.org/files/ENCFF214FDS/@@download/ENCFF214FDS.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF813XDC bigWig fold change over control ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF345IKW, ENCFF391WXJ, ENCFF581ZJL 2052511385 ENCODE Processing Pipeline 13cd0f184f3b4e6ba5849c5d39c5c62a https://www.encodeproject.org/files/ENCFF813XDC/@@download/ENCFF813XDC.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF413ETF bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF345IKW 6641125 ENCODE Processing Pipeline 19cc28863f7fd760e831d9789aaec04c https://www.encodeproject.org/files/ENCFF413ETF/@@download/ENCFF413ETF.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF317YAR bigBed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF413ETF 13139541 ENCODE Processing Pipeline 35074f714862f1a8c734f31fb1b7bc3f https://www.encodeproject.org/files/ENCFF317YAR/@@download/ENCFF317YAR.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF360BTO bed narrowPeak optimal idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF306ZWZ, ENCFF413ETF, ENCFF653QLK 370611 ENCODE Processing Pipeline d924365e4efb8282031777e9dde5f954 https://www.encodeproject.org/files/ENCFF360BTO/@@download/ENCFF360BTO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF952EXS bigBed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF306ZWZ 13155194 ENCODE Processing Pipeline 1b6ff89486e6d771670edd0f1679fb6d https://www.encodeproject.org/files/ENCFF952EXS/@@download/ENCFF952EXS.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF738MJR bigBed narrowPeak optimal idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF360BTO 754394 ENCODE Processing Pipeline 3dcdee71ec63fc0258603e9f66493767 https://www.encodeproject.org/files/ENCFF738MJR/@@download/ENCFF738MJR.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF748JSB bigBed narrowPeak conservative idr thresholded peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF466GTG 571904 ENCODE Processing Pipeline e2a4e187887c01412417b44b0264e8cf https://www.encodeproject.org/files/ENCFF748JSB/@@download/ENCFF748JSB.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF101EYO fastq reads ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 1350029631 Richard Myers, HAIB 23c1e4a9cb4a1f9f90bd4c4c55f17aeb https://www.encodeproject.org/files/ENCFF101EYO/@@download/ENCFF101EYO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF280DWH bam unfiltered alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 76 ENCFF101EYO, ENCFF643CGH 1606280798 ENCODE Processing Pipeline 74d3baabb0a0ca6b1e51f7de64bff828 https://www.encodeproject.org/files/ENCFF280DWH/@@download/ENCFF280DWH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF777VFM bam unfiltered alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 76 ENCFF101EYO, ENCFF807MUK 1603366606 ENCODE Processing Pipeline c829892feadc9ed43ae335d4d254d14e https://www.encodeproject.org/files/ENCFF777VFM/@@download/ENCFF777VFM.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF947UOE bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 76 ENCFF101EYO, ENCFF643CGH 1273146020 ENCODE Processing Pipeline e524591c11cb6eeaffcdb9fb6c49b09e https://www.encodeproject.org/files/ENCFF947UOE/@@download/ENCFF947UOE.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF494KEU bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 76 ENCFF101EYO, ENCFF807MUK 1272724755 ENCODE Processing Pipeline 7d44a02356f84eca8bb802bb7d7c6255 https://www.encodeproject.org/files/ENCFF494KEU/@@download/ENCFF494KEU.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF442VDU fastq reads ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 2629906933 Richard Myers, HAIB 9c0db0a283ef24dba5c31d6f502c453d https://www.encodeproject.org/files/ENCFF442VDU/@@download/ENCFF442VDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF307CAC bam unfiltered alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 76 ENCFF442VDU, ENCFF807MUK 2954598143 ENCODE Processing Pipeline e020feeaea0f490b2de7b9dbe0b480e9 https://www.encodeproject.org/files/ENCFF307CAC/@@download/ENCFF307CAC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF261BCK bam unfiltered alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 76 ENCFF442VDU, ENCFF643CGH 2960240266 ENCODE Processing Pipeline 4ef37bdc340ca5e4caf7b14fead11844 https://www.encodeproject.org/files/ENCFF261BCK/@@download/ENCFF261BCK.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF294RJT bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 76 ENCFF442VDU, ENCFF643CGH 2219471618 ENCODE Processing Pipeline 8d74edd8999a988679c9626a4128219c https://www.encodeproject.org/files/ENCFF294RJT/@@download/ENCFF294RJT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF608HPC bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 76 ENCFF442VDU, ENCFF807MUK 2218500595 ENCODE Processing Pipeline 6f12051c2392057b9d5a61775ccb321a https://www.encodeproject.org/files/ENCFF608HPC/@@download/ENCFF608HPC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF367HVZ bigWig signal p-value ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF294RJT 669900051 ENCODE Processing Pipeline 24e58e3c53b8c4b22c616bfd38e6e414 https://www.encodeproject.org/files/ENCFF367HVZ/@@download/ENCFF367HVZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF777RGT bigWig fold change over control ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF294RJT 738640038 ENCODE Processing Pipeline 62458b1926f39ca986b8bd5a250db9f8 https://www.encodeproject.org/files/ENCFF777RGT/@@download/ENCFF777RGT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF050ZEK bigWig signal p-value ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF608HPC 670301738 ENCODE Processing Pipeline 66c3ced4ec86ea51ac47138e2360db8b https://www.encodeproject.org/files/ENCFF050ZEK/@@download/ENCFF050ZEK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF759JVW bigWig signal p-value ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF494KEU 517654774 ENCODE Processing Pipeline fb470218d2994239b9506bd04cf02723 https://www.encodeproject.org/files/ENCFF759JVW/@@download/ENCFF759JVW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF180RAY bigWig signal p-value ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF494KEU, ENCFF608HPC 649586186 ENCODE Processing Pipeline 6e03cdae9ab0759efd88c4e8ac3ba46a https://www.encodeproject.org/files/ENCFF180RAY/@@download/ENCFF180RAY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF136IZM bigWig fold change over control ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF608HPC 737201921 ENCODE Processing Pipeline fb88a3bb0af81278a8b8ad622e3de596 https://www.encodeproject.org/files/ENCFF136IZM/@@download/ENCFF136IZM.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF472AKM bigWig signal p-value ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF294RJT, ENCFF947UOE 649050401 ENCODE Processing Pipeline 6cec379c16eb74597bbe9cbc88a61793 https://www.encodeproject.org/files/ENCFF472AKM/@@download/ENCFF472AKM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF215AQK bigWig fold change over control ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF494KEU 456684107 ENCODE Processing Pipeline fc0f28fa5b34fbe1913d88380051e03f https://www.encodeproject.org/files/ENCFF215AQK/@@download/ENCFF215AQK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF836UOT bigWig signal p-value ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF947UOE 514447322 ENCODE Processing Pipeline f6ca1ca6afd7d001a0b94322da7103ef https://www.encodeproject.org/files/ENCFF836UOT/@@download/ENCFF836UOT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF983AHF bigWig fold change over control ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF947UOE 475365742 ENCODE Processing Pipeline 28f39f45bf1514c84cec72133c9f9ed6 https://www.encodeproject.org/files/ENCFF983AHF/@@download/ENCFF983AHF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF198RAS bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF608HPC 6791954 ENCODE Processing Pipeline dbd4b6a1ee3e0043a3243bfcc4e0492e https://www.encodeproject.org/files/ENCFF198RAS/@@download/ENCFF198RAS.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF249LCG bigWig fold change over control ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF294RJT, ENCFF947UOE 1026993595 ENCODE Processing Pipeline c76643d2d805fc70f620770a2f71dbfa https://www.encodeproject.org/files/ENCFF249LCG/@@download/ENCFF249LCG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF537CVM bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF494KEU 6413610 ENCODE Processing Pipeline e255a26d1c5549872332da0f97e68d06 https://www.encodeproject.org/files/ENCFF537CVM/@@download/ENCFF537CVM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF902BRY bigWig fold change over control ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF494KEU, ENCFF608HPC 1024731264 ENCODE Processing Pipeline 4a0ad3f8dbce73407608d341424f3db9 https://www.encodeproject.org/files/ENCFF902BRY/@@download/ENCFF902BRY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF760PSK bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF494KEU, ENCFF608HPC 7099760 ENCODE Processing Pipeline ca314aa634b8c2d6da788fc5a3f9e5fb https://www.encodeproject.org/files/ENCFF760PSK/@@download/ENCFF760PSK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF156DGF bigBed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF198RAS 12803551 ENCODE Processing Pipeline 9152de2eb45a74fc62c2bb5b4b3c047c https://www.encodeproject.org/files/ENCFF156DGF/@@download/ENCFF156DGF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF655PDI bigBed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF537CVM 12968839 ENCODE Processing Pipeline dd82767dc7b0e61504a69ba6ed6d0c94 https://www.encodeproject.org/files/ENCFF655PDI/@@download/ENCFF655PDI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF387DZR bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF294RJT, ENCFF947UOE 7140436 ENCODE Processing Pipeline f3dc03cd58ea08323f502b66c0b98ec8 https://www.encodeproject.org/files/ENCFF387DZR/@@download/ENCFF387DZR.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF687ZGU bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF294RJT 6811296 ENCODE Processing Pipeline d47550f0ca00fca73433f9d11ea4e45e https://www.encodeproject.org/files/ENCFF687ZGU/@@download/ENCFF687ZGU.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF016KBY bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF947UOE 6337884 ENCODE Processing Pipeline 5a29f7c601548d45afa56d9fff355526 https://www.encodeproject.org/files/ENCFF016KBY/@@download/ENCFF016KBY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF949PDC bigBed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF687ZGU 12851812 ENCODE Processing Pipeline e44dab04eaa600ba3432f413b71189a3 https://www.encodeproject.org/files/ENCFF949PDC/@@download/ENCFF949PDC.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF014KLA bigBed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF760PSK 12747758 ENCODE Processing Pipeline ecb682c0283a40b4f86ed265df355d3f https://www.encodeproject.org/files/ENCFF014KLA/@@download/ENCFF014KLA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF733OUW bed narrowPeak conservative idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF198RAS, ENCFF537CVM, ENCFF760PSK 292359 ENCODE Processing Pipeline 539373471b68dc9aa894bb9226ea02d7 https://www.encodeproject.org/files/ENCFF733OUW/@@download/ENCFF733OUW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF426EXL bed narrowPeak conservative idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF016KBY, ENCFF387DZR, ENCFF419RSJ, ENCFF687ZGU 310169 ENCODE Processing Pipeline 43391f0db2797967c2c27c6fe0bd2e77 https://www.encodeproject.org/files/ENCFF426EXL/@@download/ENCFF426EXL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF828NCK bigBed narrowPeak optimal idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF944IVP 812641 ENCODE Processing Pipeline 98a06a29e5ae4b8fdb3d293ff3c8ac30 https://www.encodeproject.org/files/ENCFF828NCK/@@download/ENCFF828NCK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF241JAR bed narrowPeak optimal idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF016KBY, ENCFF387DZR, ENCFF419RSJ, ENCFF687ZGU 462030 ENCODE Processing Pipeline b2cafae8275d8fceeb4894d5144418ab https://www.encodeproject.org/files/ENCFF241JAR/@@download/ENCFF241JAR.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF082BWM bigBed narrowPeak optimal idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF241JAR 861353 ENCODE Processing Pipeline 0a1bf74a59f64c8019181da77d502d44 https://www.encodeproject.org/files/ENCFF082BWM/@@download/ENCFF082BWM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF485ZUA bigBed narrowPeak conservative idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF733OUW 606183 ENCODE Processing Pipeline c10737392a47882c7c8f43eed85ca218 https://www.encodeproject.org/files/ENCFF485ZUA/@@download/ENCFF485ZUA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF313LFB bigBed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF016KBY 12975595 ENCODE Processing Pipeline 0ec3727203d0b4212f435d2b0cbf293e https://www.encodeproject.org/files/ENCFF313LFB/@@download/ENCFF313LFB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF862IPF bigBed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF387DZR 12801840 ENCODE Processing Pipeline afc5def968acf7692def7cf8a9619929 https://www.encodeproject.org/files/ENCFF862IPF/@@download/ENCFF862IPF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF944IVP bed narrowPeak optimal idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF198RAS, ENCFF537CVM, ENCFF760PSK 426694 ENCODE Processing Pipeline 8f0cfb1c8ef37a3bb213a71519556f28 https://www.encodeproject.org/files/ENCFF944IVP/@@download/ENCFF944IVP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF361CAV bigBed narrowPeak conservative idr thresholded peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF426EXL 629664 ENCODE Processing Pipeline ff178e667f559edb7c167e245df8f9a9 https://www.encodeproject.org/files/ENCFF361CAV/@@download/ENCFF361CAV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF791QOW fastq reads ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF594LDJ 3242395419 Michael Snyder, Stanford f11409229c806ac28bd157606be84f0b SRA:SRR6214411 https://www.encodeproject.org/files/ENCFF791QOW/@@download/ENCFF791QOW.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released borderline replicate concordance, antibody characterized with exemption ENCFF615PQS fastq reads ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF172SAB 3015440495 Michael Snyder, Stanford 5668d638ae70290e80e57fd22c74ae19 SRA:SRR6214410 https://www.encodeproject.org/files/ENCFF615PQS/@@download/ENCFF615PQS.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released borderline replicate concordance, antibody characterized with exemption ENCFF172SAB fastq reads ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF615PQS 2716741725 Michael Snyder, Stanford 8aea1e733a7ec37e111fc341b38f000d SRA:SRR6214410 https://www.encodeproject.org/files/ENCFF172SAB/@@download/ENCFF172SAB.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released borderline replicate concordance, antibody characterized with exemption ENCFF594LDJ fastq reads ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF791QOW 3766151197 Michael Snyder, Stanford 345dda117ef3951d1823e75915ec9078 SRA:SRR6214411 https://www.encodeproject.org/files/ENCFF594LDJ/@@download/ENCFF594LDJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released borderline replicate concordance, antibody characterized with exemption ENCFF910XBQ bam unfiltered alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF594LDJ, ENCFF791QOW, ENCFF807MUK 6637927452 ENCODE Processing Pipeline 3d86af31083340e592facc9264937760 https://www.encodeproject.org/files/ENCFF910XBQ/@@download/ENCFF910XBQ.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF977IYR bam unfiltered alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF172SAB, ENCFF615PQS, ENCFF807MUK 5470605542 ENCODE Processing Pipeline 1cf7598d0b5e221bf01c0f3d10fb5677 https://www.encodeproject.org/files/ENCFF977IYR/@@download/ENCFF977IYR.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF731TFY bam unfiltered alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF594LDJ, ENCFF643CGH, ENCFF791QOW 6652609953 ENCODE Processing Pipeline dd26085195da219920aa149a30c889ab https://www.encodeproject.org/files/ENCFF731TFY/@@download/ENCFF731TFY.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF891JKK bam unfiltered alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF172SAB, ENCFF615PQS, ENCFF643CGH 5483672529 ENCODE Processing Pipeline 1b7b43ad415b4d7f74e2563bebca4b1b https://www.encodeproject.org/files/ENCFF891JKK/@@download/ENCFF891JKK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF148POB bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF172SAB, ENCFF615PQS, ENCFF807MUK 4566365015 ENCODE Processing Pipeline bd5b79d251812d5fca24e8775770530c https://www.encodeproject.org/files/ENCFF148POB/@@download/ENCFF148POB.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF818HKZ bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF172SAB, ENCFF615PQS, ENCFF643CGH 4575865511 ENCODE Processing Pipeline 785fd10c3bed68e5e5ff818477ee1de9 https://www.encodeproject.org/files/ENCFF818HKZ/@@download/ENCFF818HKZ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF520NCD bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF594LDJ, ENCFF791QOW, ENCFF807MUK 5495199680 ENCODE Processing Pipeline 102addcd58931b82ad5d38015ff338b8 https://www.encodeproject.org/files/ENCFF520NCD/@@download/ENCFF520NCD.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF407CPT bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF594LDJ, ENCFF643CGH, ENCFF791QOW 5508273671 ENCODE Processing Pipeline ce1f1b148a6b5b9a0c58efcc31461294 https://www.encodeproject.org/files/ENCFF407CPT/@@download/ENCFF407CPT.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF175XCT bigBed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF661IHD 11295265 ENCODE Processing Pipeline 47b28d5a32f17b09846aff16af77a105 https://www.encodeproject.org/files/ENCFF175XCT/@@download/ENCFF175XCT.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF606PZE bed narrowPeak conservative idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF208MYK, ENCFF378WXQ, ENCFF661IHD 2273 ENCODE Processing Pipeline 1f16f4657edc226aa637a97745486317 https://www.encodeproject.org/files/ENCFF606PZE/@@download/ENCFF606PZE.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF558SFX bigWig fold change over control ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF148POB, ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 2873823345 ENCODE Processing Pipeline 691774e73fe383d4fe5365d9f1bd65eb https://www.encodeproject.org/files/ENCFF558SFX/@@download/ENCFF558SFX.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF378WXQ bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 6797746 ENCODE Processing Pipeline 4901a8680828e0189b635ddb7439f3f3 https://www.encodeproject.org/files/ENCFF378WXQ/@@download/ENCFF378WXQ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF208MYK bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF148POB, ENCFF172XZA, ENCFF843IXX 6699545 ENCODE Processing Pipeline f498ff7c88c3fc3a35af8cbdea109157 https://www.encodeproject.org/files/ENCFF208MYK/@@download/ENCFF208MYK.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF696VHC bigBed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF378WXQ 11358797 ENCODE Processing Pipeline 2957450621dca45ef19a818a81d209b3 https://www.encodeproject.org/files/ENCFF696VHC/@@download/ENCFF696VHC.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF946JDP bigBed narrowPeak conservative idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF606PZE 72825 ENCODE Processing Pipeline 27ede2773201670f16d9d8cd9a377a09 https://www.encodeproject.org/files/ENCFF946JDP/@@download/ENCFF946JDP.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF949EAE bed narrowPeak optimal idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF208MYK, ENCFF378WXQ, ENCFF661IHD 5699 ENCODE Processing Pipeline ce4bb6cb1145b13af954783f501088d3 https://www.encodeproject.org/files/ENCFF949EAE/@@download/ENCFF949EAE.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF724KQE bigWig signal p-value ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 2228805745 ENCODE Processing Pipeline a013e01df121e2cb8fd43eeb35fdab4b https://www.encodeproject.org/files/ENCFF724KQE/@@download/ENCFF724KQE.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF700OIB bigWig fold change over control ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 2247316446 ENCODE Processing Pipeline 48f4a811fb3586eacd5ee93e99cc1f20 https://www.encodeproject.org/files/ENCFF700OIB/@@download/ENCFF700OIB.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF661IHD bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF148POB, ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 7172618 ENCODE Processing Pipeline 8662c94c44ee8c9b33736b4dcb8e7915 https://www.encodeproject.org/files/ENCFF661IHD/@@download/ENCFF661IHD.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF849DAO bigWig signal p-value ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF148POB, ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 2175038214 ENCODE Processing Pipeline 8ad4b63c4c093fec625c614bc9ea1aa1 https://www.encodeproject.org/files/ENCFF849DAO/@@download/ENCFF849DAO.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF331QAG bigBed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF208MYK 11444453 ENCODE Processing Pipeline c994b3d33f6ab9e2813334be994abdc0 https://www.encodeproject.org/files/ENCFF331QAG/@@download/ENCFF331QAG.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF423UQI bigBed narrowPeak optimal idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF949EAE 65398 ENCODE Processing Pipeline 4caea3341252b22e9d8438e48cbafe76 https://www.encodeproject.org/files/ENCFF423UQI/@@download/ENCFF423UQI.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF639QTO bigWig signal p-value ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF148POB, ENCFF172XZA, ENCFF843IXX 2180130690 ENCODE Processing Pipeline 41c579419bdca0c4bfff7d1bdb7dafc1 https://www.encodeproject.org/files/ENCFF639QTO/@@download/ENCFF639QTO.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF764GII bigWig fold change over control ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF148POB, ENCFF172XZA, ENCFF843IXX 2105041721 ENCODE Processing Pipeline 77f1b0e1e080d49bd34b8cb9eb9c8bb3 https://www.encodeproject.org/files/ENCFF764GII/@@download/ENCFF764GII.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF746SHW bigWig signal p-value ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF407CPT, ENCFF475DWJ, ENCFF621RXC, ENCFF818HKZ 2258821208 ENCODE Processing Pipeline 14afa7a32eae9645a6a80c168d38e620 https://www.encodeproject.org/files/ENCFF746SHW/@@download/ENCFF746SHW.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF041JYE bigWig signal p-value ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF407CPT, ENCFF475DWJ, ENCFF621RXC 2258117812 ENCODE Processing Pipeline 1baeadce915fc6e9acb499be6c5e73dd https://www.encodeproject.org/files/ENCFF041JYE/@@download/ENCFF041JYE.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF289KWB bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF818HKZ 6706019 ENCODE Processing Pipeline b4a1c639fc5738ed2a4c8d5f08dd7704 https://www.encodeproject.org/files/ENCFF289KWB/@@download/ENCFF289KWB.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF185LLG bigWig fold change over control ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF407CPT, ENCFF475DWJ, ENCFF621RXC 2219911577 ENCODE Processing Pipeline d5dc691e448fecc4ca4dfb60fc6ad993 https://www.encodeproject.org/files/ENCFF185LLG/@@download/ENCFF185LLG.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF168TYL bigWig fold change over control ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF818HKZ 2085054932 ENCODE Processing Pipeline c2eaf9d6fb70b65f9d7b2d462bc17972 https://www.encodeproject.org/files/ENCFF168TYL/@@download/ENCFF168TYL.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF451LUL bigWig signal p-value ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF818HKZ 1981770358 ENCODE Processing Pipeline 4e6aab706870910c140cc5f12edc1fb1 https://www.encodeproject.org/files/ENCFF451LUL/@@download/ENCFF451LUL.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF852KPF bigBed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF289KWB 11467132 ENCODE Processing Pipeline 87224b3d0daa9d4328b1d0aa8ee4cb8a https://www.encodeproject.org/files/ENCFF852KPF/@@download/ENCFF852KPF.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF840END bigBed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF763XOQ 11313098 ENCODE Processing Pipeline 75f174d8891696679781b4bf0bcfc60b https://www.encodeproject.org/files/ENCFF840END/@@download/ENCFF840END.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF813YNJ bed narrowPeak conservative idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF064ATR, ENCFF289KWB, ENCFF419RSJ, ENCFF763XOQ 2931 ENCODE Processing Pipeline 8646b3807986413b883d464e3397ea11 https://www.encodeproject.org/files/ENCFF813YNJ/@@download/ENCFF813YNJ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF820PHL bed narrowPeak optimal idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF064ATR, ENCFF289KWB, ENCFF419RSJ, ENCFF763XOQ 6671 ENCODE Processing Pipeline 0bb83f0f817ec549070e3509a9759c39 https://www.encodeproject.org/files/ENCFF820PHL/@@download/ENCFF820PHL.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF833UKH bigWig fold change over control ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF407CPT, ENCFF475DWJ, ENCFF621RXC, ENCFF818HKZ 4075655818 ENCODE Processing Pipeline 878b68eea8c3f4ede4254e8b5d207c51 https://www.encodeproject.org/files/ENCFF833UKH/@@download/ENCFF833UKH.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF064ATR bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF407CPT, ENCFF475DWJ, ENCFF621RXC 6809148 ENCODE Processing Pipeline 28cbcccc926156293316965d7caf570c https://www.encodeproject.org/files/ENCFF064ATR/@@download/ENCFF064ATR.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF763XOQ bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF407CPT, ENCFF475DWJ, ENCFF621RXC, ENCFF818HKZ 7179859 ENCODE Processing Pipeline 973cb187ef4bf6e88f4e7df27944276d https://www.encodeproject.org/files/ENCFF763XOQ/@@download/ENCFF763XOQ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF973BHC bigBed narrowPeak conservative idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF813YNJ 85218 ENCODE Processing Pipeline e229d6cb81e5e45962c260aadf44be9c https://www.encodeproject.org/files/ENCFF973BHC/@@download/ENCFF973BHC.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF522HBC bigBed narrowPeak optimal idr thresholded peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF820PHL 79860 ENCODE Processing Pipeline 2701bb934e83c6d0d288fc74ab9a8123 https://www.encodeproject.org/files/ENCFF522HBC/@@download/ENCFF522HBC.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF425DVA bigBed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF064ATR 11381276 ENCODE Processing Pipeline d2ede540770634c291f9a3358558d636 https://www.encodeproject.org/files/ENCFF425DVA/@@download/ENCFF425DVA.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF306MYT fastq reads ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 1 100 paired-ended 1 ENCFF574SDW 3124163113 Michael Snyder, Stanford e94d28c6de8ecdf690f8a058c09d495b SRA:SRR6213910 https://www.encodeproject.org/files/ENCFF306MYT/@@download/ENCFF306MYT.fastq.gz Illumina HiSeq 4000 /files/ENCFF091IYB/, /files/ENCFF445KUN/ released missing genetic modification characterization ENCFF574SDW fastq reads ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 1 100 paired-ended 2 ENCFF306MYT 3446870323 Michael Snyder, Stanford e7718fba45d82ae5f9e0241b855c8887 SRA:SRR6213910 https://www.encodeproject.org/files/ENCFF574SDW/@@download/ENCFF574SDW.fastq.gz Illumina HiSeq 4000 /files/ENCFF091IYB/, /files/ENCFF445KUN/ released missing genetic modification characterization ENCFF240EGC fastq reads ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 1 100 paired-ended 1 ENCFF905PWR 5165603990 Michael Snyder, Stanford 04557400d166d06d29ab7e124e920077 SRA:SRR6213909 https://www.encodeproject.org/files/ENCFF240EGC/@@download/ENCFF240EGC.fastq.gz Illumina HiSeq 4000 /files/ENCFF091IYB/, /files/ENCFF445KUN/ released missing genetic modification characterization ENCFF905PWR fastq reads ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 1 100 paired-ended 2 ENCFF240EGC 5636140887 Michael Snyder, Stanford 825d0a839a2a94f211bee3ab99f347f2 SRA:SRR6213909 https://www.encodeproject.org/files/ENCFF905PWR/@@download/ENCFF905PWR.fastq.gz Illumina HiSeq 4000 /files/ENCFF091IYB/, /files/ENCFF445KUN/ released missing genetic modification characterization ENCFF156HSL bam unfiltered alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 100 ENCFF306MYT, ENCFF574SDW, ENCFF643CGH 6764421390 ENCODE Processing Pipeline ab7457f5dc107be50c9a7172ddc350d7 https://www.encodeproject.org/files/ENCFF156HSL/@@download/ENCFF156HSL.bam GRCh38 released missing genetic modification characterization ENCFF579IIE bam unfiltered alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 100 ENCFF306MYT, ENCFF574SDW, ENCFF807MUK 6744900979 ENCODE Processing Pipeline 194d3d01fc78542aa5f179601d0012bf https://www.encodeproject.org/files/ENCFF579IIE/@@download/ENCFF579IIE.bam hg19 released missing genetic modification characterization ENCFF772UWJ bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 100 ENCFF240EGC, ENCFF643CGH, ENCFF905PWR 7648925729 ENCODE Processing Pipeline bd181453d705203976607e7866bfa97e https://www.encodeproject.org/files/ENCFF772UWJ/@@download/ENCFF772UWJ.bam GRCh38 released missing genetic modification characterization ENCFF606TJM bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 100 ENCFF306MYT, ENCFF574SDW, ENCFF643CGH 4977742897 ENCODE Processing Pipeline 1e37bae506c014aa9e525642c3eed810 https://www.encodeproject.org/files/ENCFF606TJM/@@download/ENCFF606TJM.bam GRCh38 released missing genetic modification characterization ENCFF995EGD bam unfiltered alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 100 ENCFF240EGC, ENCFF807MUK, ENCFF905PWR 10428605620 ENCODE Processing Pipeline 40f5f6faeefaf066754535bcbdc259dd https://www.encodeproject.org/files/ENCFF995EGD/@@download/ENCFF995EGD.bam hg19 released missing genetic modification characterization ENCFF949SXE bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 100 ENCFF240EGC, ENCFF807MUK, ENCFF905PWR 7641618380 ENCODE Processing Pipeline 54cc212661afec01bee98e3dbd778dae https://www.encodeproject.org/files/ENCFF949SXE/@@download/ENCFF949SXE.bam hg19 released missing genetic modification characterization ENCFF582ETC bam unfiltered alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 100 ENCFF240EGC, ENCFF643CGH, ENCFF905PWR 10452896772 ENCODE Processing Pipeline 0fdece841cbf00f857c0a67b3fa7578a https://www.encodeproject.org/files/ENCFF582ETC/@@download/ENCFF582ETC.bam GRCh38 released missing genetic modification characterization ENCFF821SUV bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 100 ENCFF306MYT, ENCFF574SDW, ENCFF807MUK 4973965668 ENCODE Processing Pipeline 5d0e9411aa456b724a87cee49d342adb https://www.encodeproject.org/files/ENCFF821SUV/@@download/ENCFF821SUV.bam hg19 released missing genetic modification characterization ENCFF329WKM bigBed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF211EQN 13135538 ENCODE Processing Pipeline a5d00f1ab9ec9987eda2787185d82d0e https://www.encodeproject.org/files/ENCFF329WKM/@@download/ENCFF329WKM.bigBed hg19 released missing genetic modification characterization ENCFF632WIR bigBed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF096XNX 13271851 ENCODE Processing Pipeline d0e4400028440d7b7e8211699569a320 https://www.encodeproject.org/files/ENCFF632WIR/@@download/ENCFF632WIR.bigBed hg19 released missing genetic modification characterization ENCFF834WGJ bed narrowPeak optimal idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF096XNX, ENCFF211EQN, ENCFF396RQL 221226 ENCODE Processing Pipeline 31f39e7e53f6aa68a77cdb6385d89ac6 https://www.encodeproject.org/files/ENCFF834WGJ/@@download/ENCFF834WGJ.bed.gz hg19 released missing genetic modification characterization ENCFF745ZMU bigBed narrowPeak conservative idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF610XQH 488128 ENCODE Processing Pipeline f2637b8ea8d1a2869906d8c6d4ab4abd https://www.encodeproject.org/files/ENCFF745ZMU/@@download/ENCFF745ZMU.bigBed hg19 released missing genetic modification characterization ENCFF759TNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF834WGJ 516881 ENCODE Processing Pipeline 949482d1218cdcf585d7dc3099c0a111 https://www.encodeproject.org/files/ENCFF759TNJ/@@download/ENCFF759TNJ.bigBed hg19 released missing genetic modification characterization ENCFF667DGO bigWig signal p-value ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF129IXY, ENCFF821SUV, ENCFF949SXE 842605371 ENCODE Processing Pipeline 3b324908b16d05c8126ebb79b2296625 https://www.encodeproject.org/files/ENCFF667DGO/@@download/ENCFF667DGO.bigWig hg19 released missing genetic modification characterization ENCFF257RLI bigWig fold change over control ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF129IXY, ENCFF949SXE 1673280896 ENCODE Processing Pipeline 8984ba38f5dc5a704c5d03093d05d597 https://www.encodeproject.org/files/ENCFF257RLI/@@download/ENCFF257RLI.bigWig hg19 released missing genetic modification characterization ENCFF441LZN bigWig fold change over control ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF129IXY, ENCFF821SUV, ENCFF949SXE 2177735469 ENCODE Processing Pipeline a0cf41a2285e8dff97c11dd4453d4d1e https://www.encodeproject.org/files/ENCFF441LZN/@@download/ENCFF441LZN.bigWig hg19 released missing genetic modification characterization ENCFF211EQN bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF129IXY, ENCFF949SXE 7188875 ENCODE Processing Pipeline 9503995f71ff536c4adfe93168cc0182 https://www.encodeproject.org/files/ENCFF211EQN/@@download/ENCFF211EQN.bed.gz hg19 released missing genetic modification characterization ENCFF692NTA bigBed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF396RQL 13076538 ENCODE Processing Pipeline 747a59f21474b9c8e3d00dd6e2bc6a13 https://www.encodeproject.org/files/ENCFF692NTA/@@download/ENCFF692NTA.bigBed hg19 released missing genetic modification characterization ENCFF911SRU bigWig signal p-value ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF129IXY, ENCFF949SXE 875937934 ENCODE Processing Pipeline 06cf2a811c941adf22e9bb4cefdf6e77 https://www.encodeproject.org/files/ENCFF911SRU/@@download/ENCFF911SRU.bigWig hg19 released missing genetic modification characterization ENCFF096XNX bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF129IXY, ENCFF821SUV 7115701 ENCODE Processing Pipeline 0e76f84baefde2f4cff875157755018e https://www.encodeproject.org/files/ENCFF096XNX/@@download/ENCFF096XNX.bed.gz hg19 released missing genetic modification characterization ENCFF396RQL bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF129IXY, ENCFF821SUV, ENCFF949SXE 7272347 ENCODE Processing Pipeline 57e11a3a632dbd8f80eb7d732dadf665 https://www.encodeproject.org/files/ENCFF396RQL/@@download/ENCFF396RQL.bed.gz hg19 released missing genetic modification characterization ENCFF730SSI bigWig signal p-value ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF129IXY, ENCFF821SUV 898872790 ENCODE Processing Pipeline e8b7d26563e2b9fe7334b145a085e03e https://www.encodeproject.org/files/ENCFF730SSI/@@download/ENCFF730SSI.bigWig hg19 released missing genetic modification characterization ENCFF558PVA bigWig fold change over control ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF129IXY, ENCFF821SUV 1217070799 ENCODE Processing Pipeline 3c516e2ed04f19c77580dadae83975ac https://www.encodeproject.org/files/ENCFF558PVA/@@download/ENCFF558PVA.bigWig hg19 released missing genetic modification characterization ENCFF021QXY bigWig fold change over control ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF230BZG, ENCFF772UWJ 1741622162 ENCODE Processing Pipeline 69fe033b266682f5fb9071c8b534f54e https://www.encodeproject.org/files/ENCFF021QXY/@@download/ENCFF021QXY.bigWig GRCh38 released missing genetic modification characterization ENCFF257WVJ bigWig fold change over control ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF230BZG, ENCFF606TJM, ENCFF772UWJ 2182257128 ENCODE Processing Pipeline ab3637f3edf3071dfae876596d62bdf7 https://www.encodeproject.org/files/ENCFF257WVJ/@@download/ENCFF257WVJ.bigWig GRCh38 released missing genetic modification characterization ENCFF344GVL bigBed narrowPeak conservative idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF512UAX 491303 ENCODE Processing Pipeline 64a24182c9ccea0559fb81cd9631ea43 https://www.encodeproject.org/files/ENCFF344GVL/@@download/ENCFF344GVL.bigBed GRCh38 released missing genetic modification characterization ENCFF565EUP bed narrowPeak optimal idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF656LUR, ENCFF759XRT, ENCFF841IWY 215562 ENCODE Processing Pipeline 41e7fefe9a39f61ac92989bdc3f65800 https://www.encodeproject.org/files/ENCFF565EUP/@@download/ENCFF565EUP.bed.gz GRCh38 released missing genetic modification characterization ENCFF610XQH bed narrowPeak conservative idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF096XNX, ENCFF211EQN, ENCFF396RQL 204242 ENCODE Processing Pipeline 78aa33b6144d912670765fcf90542d6c https://www.encodeproject.org/files/ENCFF610XQH/@@download/ENCFF610XQH.bed.gz hg19 released missing genetic modification characterization ENCFF841IWY bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF230BZG, ENCFF606TJM, ENCFF772UWJ 7275651 ENCODE Processing Pipeline 0f956574719d378351eeb404f2ecd954 https://www.encodeproject.org/files/ENCFF841IWY/@@download/ENCFF841IWY.bed.gz GRCh38 released missing genetic modification characterization ENCFF512UAX bed narrowPeak conservative idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF656LUR, ENCFF759XRT, ENCFF841IWY 202328 ENCODE Processing Pipeline 8c2990eb357aea977e1bad9d790f93c3 https://www.encodeproject.org/files/ENCFF512UAX/@@download/ENCFF512UAX.bed.gz GRCh38 released missing genetic modification characterization ENCFF378LUO bigWig signal p-value ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF230BZG, ENCFF606TJM 902778250 ENCODE Processing Pipeline 910287f4384a1357fef23374007fb223 https://www.encodeproject.org/files/ENCFF378LUO/@@download/ENCFF378LUO.bigWig GRCh38 released missing genetic modification characterization ENCFF782FTE bigWig signal p-value ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF230BZG, ENCFF772UWJ 903620054 ENCODE Processing Pipeline 875f183216e038b409cc93bb0548ac10 https://www.encodeproject.org/files/ENCFF782FTE/@@download/ENCFF782FTE.bigWig GRCh38 released missing genetic modification characterization ENCFF881EFY bigBed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF656LUR 13277997 ENCODE Processing Pipeline 25d6fdc9f4a9715000c077b36de94ff6 https://www.encodeproject.org/files/ENCFF881EFY/@@download/ENCFF881EFY.bigBed GRCh38 released missing genetic modification characterization ENCFF656LUR bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF230BZG, ENCFF606TJM 7093565 ENCODE Processing Pipeline e73bda8d9d9388e1071ea85cf72de74a https://www.encodeproject.org/files/ENCFF656LUR/@@download/ENCFF656LUR.bed.gz GRCh38 released missing genetic modification characterization ENCFF516MZS bigBed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF759XRT 13157254 ENCODE Processing Pipeline 5f4c3122ddd4dee7ef3ed0f04f4ebb0d https://www.encodeproject.org/files/ENCFF516MZS/@@download/ENCFF516MZS.bigBed GRCh38 released missing genetic modification characterization ENCFF020ABY bigBed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF841IWY 13089862 ENCODE Processing Pipeline e1a2ff5a55d446f7cb61f08645c54f3c https://www.encodeproject.org/files/ENCFF020ABY/@@download/ENCFF020ABY.bigBed GRCh38 released missing genetic modification characterization ENCFF119NAV bigWig signal p-value ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF230BZG, ENCFF606TJM, ENCFF772UWJ 843761808 ENCODE Processing Pipeline 1ad579b34d4dadda3b4c3f24b66386c4 https://www.encodeproject.org/files/ENCFF119NAV/@@download/ENCFF119NAV.bigWig GRCh38 released missing genetic modification characterization ENCFF038PBJ bigWig fold change over control ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF230BZG, ENCFF606TJM 1220486391 ENCODE Processing Pipeline ce0b83d690d41ac0c7145b002667385b https://www.encodeproject.org/files/ENCFF038PBJ/@@download/ENCFF038PBJ.bigWig GRCh38 released missing genetic modification characterization ENCFF759XRT bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF230BZG, ENCFF772UWJ 7174514 ENCODE Processing Pipeline 302b16549fbc9c873e4c29dd0799a6d6 https://www.encodeproject.org/files/ENCFF759XRT/@@download/ENCFF759XRT.bed.gz GRCh38 released missing genetic modification characterization ENCFF653VWY bigBed narrowPeak optimal idr thresholded peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF565EUP 514432 ENCODE Processing Pipeline 2251b869717c6850584d09ca977cefd2 https://www.encodeproject.org/files/ENCFF653VWY/@@download/ENCFF653VWY.bigBed GRCh38 released missing genetic modification characterization ENCFF118UPE fastq reads ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1161479017 Richard Myers, HAIB 34eac133dca372072a63292d77ebf10e SRA:SRR5339107 https://www.encodeproject.org/files/ENCFF118UPE/@@download/ENCFF118UPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF039MUL fastq reads ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1705490081 Richard Myers, HAIB f85571476eaeee69ed238d2983334cb3 SRA:SRR5339106 https://www.encodeproject.org/files/ENCFF039MUL/@@download/ENCFF039MUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF822PEP bam unfiltered alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF039MUL, ENCFF643CGH 1989539862 ENCODE Processing Pipeline 3357364d3ac2642f9a6852c1bd721774 https://www.encodeproject.org/files/ENCFF822PEP/@@download/ENCFF822PEP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF959PDP bam unfiltered alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF118UPE, ENCFF643CGH 1405639123 ENCODE Processing Pipeline df5f8552d5176bc9c02c3ff7f67d0cce https://www.encodeproject.org/files/ENCFF959PDP/@@download/ENCFF959PDP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF149IMC bam unfiltered alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF118UPE, ENCFF807MUK 1402390812 ENCODE Processing Pipeline b2a2287f4cc0003f3f2a87f6aac909f0 https://www.encodeproject.org/files/ENCFF149IMC/@@download/ENCFF149IMC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF506EAM bam unfiltered alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF039MUL, ENCFF807MUK 1983963761 ENCODE Processing Pipeline a78021eeeb55da78bdfd3146e3d48b03 https://www.encodeproject.org/files/ENCFF506EAM/@@download/ENCFF506EAM.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF519JXW bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF118UPE, ENCFF643CGH 1085955562 ENCODE Processing Pipeline 2d02807170eaad3c08a3af9845b366de https://www.encodeproject.org/files/ENCFF519JXW/@@download/ENCFF519JXW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF459SLH bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF118UPE, ENCFF807MUK 1085375818 ENCODE Processing Pipeline c02868f40a07de02eace94d2513f1f41 https://www.encodeproject.org/files/ENCFF459SLH/@@download/ENCFF459SLH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF632STR bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF039MUL, ENCFF643CGH 1516805378 ENCODE Processing Pipeline ba2a7e48f6396bc11591013a7950039e https://www.encodeproject.org/files/ENCFF632STR/@@download/ENCFF632STR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF805RHS bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF039MUL, ENCFF807MUK 1515774464 ENCODE Processing Pipeline 0dbb12b8959b660bf0a8cd6acdd8dd12 https://www.encodeproject.org/files/ENCFF805RHS/@@download/ENCFF805RHS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF100ICW bigWig signal p-value ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF519JXW 581611219 ENCODE Processing Pipeline 37c3d509d5d9126c7330c5ce64be582b https://www.encodeproject.org/files/ENCFF100ICW/@@download/ENCFF100ICW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF426KIU bigWig signal p-value ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF632STR 516893173 ENCODE Processing Pipeline 21baba6da88e0241c9f40a5c64b4e99c https://www.encodeproject.org/files/ENCFF426KIU/@@download/ENCFF426KIU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF701SES bigWig fold change over control ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF519JXW 412638101 ENCODE Processing Pipeline 66d7ae9a59b6edc8a0895178823ab8bb https://www.encodeproject.org/files/ENCFF701SES/@@download/ENCFF701SES.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF618LAV bigWig signal p-value ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF519JXW, ENCFF632STR 671224076 ENCODE Processing Pipeline 509ecee68e8124308648d1c2c5a7a7fc https://www.encodeproject.org/files/ENCFF618LAV/@@download/ENCFF618LAV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF284NDM bigWig fold change over control ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF632STR 608210574 ENCODE Processing Pipeline f933a5df2779aff1095bfcfaedbc2f80 https://www.encodeproject.org/files/ENCFF284NDM/@@download/ENCFF284NDM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF367BNC bigWig fold change over control ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF519JXW, ENCFF632STR 849613708 ENCODE Processing Pipeline 6e4e511096de71dafc1ed3a21c272661 https://www.encodeproject.org/files/ENCFF367BNC/@@download/ENCFF367BNC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF242PKV bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF519JXW 6170649 ENCODE Processing Pipeline 15571e8b799fa6921fa8c138c1014e28 https://www.encodeproject.org/files/ENCFF242PKV/@@download/ENCFF242PKV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF171JNC bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF632STR 6645615 ENCODE Processing Pipeline aa331066de1b3b2b3e8d51ce1b916da4 https://www.encodeproject.org/files/ENCFF171JNC/@@download/ENCFF171JNC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF905PXO bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF519JXW, ENCFF632STR 6992987 ENCODE Processing Pipeline dbf106075675d33cea02e2b8e53526fd https://www.encodeproject.org/files/ENCFF905PXO/@@download/ENCFF905PXO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685IEP bigBed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF242PKV 12974993 ENCODE Processing Pipeline 1213b7afd112389b15bb5a22dee495e0 https://www.encodeproject.org/files/ENCFF685IEP/@@download/ENCFF685IEP.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF974JZY bigBed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF171JNC 12868704 ENCODE Processing Pipeline 844cfb70232567c7de0a9c2555788262 https://www.encodeproject.org/files/ENCFF974JZY/@@download/ENCFF974JZY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894JMC bigBed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF905PXO 12884333 ENCODE Processing Pipeline 3875eae424321e4482fa452d2403fadc https://www.encodeproject.org/files/ENCFF894JMC/@@download/ENCFF894JMC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249MMP bed narrowPeak conservative idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF171JNC, ENCFF242PKV, ENCFF419RSJ, ENCFF905PXO 465837 ENCODE Processing Pipeline fd1bbbfb4d0e0160c8e33adfcc4ad745 https://www.encodeproject.org/files/ENCFF249MMP/@@download/ENCFF249MMP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF016HZH bigBed narrowPeak conservative idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF249MMP 1044736 ENCODE Processing Pipeline b9909d3570624327cf3549b2cd90b340 https://www.encodeproject.org/files/ENCFF016HZH/@@download/ENCFF016HZH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF092ZIZ bed narrowPeak optimal idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF171JNC, ENCFF242PKV, ENCFF419RSJ, ENCFF905PXO 500220 ENCODE Processing Pipeline 74b7ab810e50d9614ea4238d1f6b5b56 https://www.encodeproject.org/files/ENCFF092ZIZ/@@download/ENCFF092ZIZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF862QTV bigBed narrowPeak optimal idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF092ZIZ 1105412 ENCODE Processing Pipeline 6b4812139dfe0be3a1ddfa8f88c1c31c https://www.encodeproject.org/files/ENCFF862QTV/@@download/ENCFF862QTV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF718BGT bigWig signal p-value ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF459SLH 1082449024 ENCODE Processing Pipeline c99830935376acf5ad61ca73754d3bdd https://www.encodeproject.org/files/ENCFF718BGT/@@download/ENCFF718BGT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF394PLR bigWig signal p-value ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF805RHS 1206503733 ENCODE Processing Pipeline b56c68efd3f56303fc696f272f52acf7 https://www.encodeproject.org/files/ENCFF394PLR/@@download/ENCFF394PLR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF356REE bigWig signal p-value ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF459SLH, ENCFF805RHS 1477574928 ENCODE Processing Pipeline a980e5fea4eefe2b48e72bff998154b0 https://www.encodeproject.org/files/ENCFF356REE/@@download/ENCFF356REE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF444KXY bigWig fold change over control ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF459SLH 798953259 ENCODE Processing Pipeline 0cbf037d4dee523b19fd03764d13c013 https://www.encodeproject.org/files/ENCFF444KXY/@@download/ENCFF444KXY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF647LFO bigWig fold change over control ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF805RHS 1027720831 ENCODE Processing Pipeline 507951be046f4f422ffa2cded28007e3 https://www.encodeproject.org/files/ENCFF647LFO/@@download/ENCFF647LFO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF539XWR bigWig fold change over control ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF459SLH, ENCFF805RHS 1424702497 ENCODE Processing Pipeline 1c134a9df8aca016ee8cdcd15908936f https://www.encodeproject.org/files/ENCFF539XWR/@@download/ENCFF539XWR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF292NEY bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF459SLH 6756387 ENCODE Processing Pipeline 623da1cbb5b55ef34e2f87f21ae1bb31 https://www.encodeproject.org/files/ENCFF292NEY/@@download/ENCFF292NEY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF020AAE bigBed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF292NEY 12973638 ENCODE Processing Pipeline 4db924d972716046908d8ce17dcb760d https://www.encodeproject.org/files/ENCFF020AAE/@@download/ENCFF020AAE.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF401IHO bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF805RHS 7017854 ENCODE Processing Pipeline 79ae812ed183bdf0f04c2100e22121fd https://www.encodeproject.org/files/ENCFF401IHO/@@download/ENCFF401IHO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF143HUI bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF459SLH, ENCFF805RHS 7172300 ENCODE Processing Pipeline 2add885ec837ec4802efefe33bb82f64 https://www.encodeproject.org/files/ENCFF143HUI/@@download/ENCFF143HUI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF112MBC bed narrowPeak conservative idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF143HUI, ENCFF292NEY, ENCFF401IHO 459202 ENCODE Processing Pipeline cfdbaab0aa6ee33daa3ccbfef5f1dc44 https://www.encodeproject.org/files/ENCFF112MBC/@@download/ENCFF112MBC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF071DQM bigBed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF143HUI 12881588 ENCODE Processing Pipeline 2543edaf30fdb5c4d81d74c94acfc2ec https://www.encodeproject.org/files/ENCFF071DQM/@@download/ENCFF071DQM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF344PUT bigBed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF401IHO 12880571 ENCODE Processing Pipeline 9f9128a26b11a2996689e0895b3dc76d https://www.encodeproject.org/files/ENCFF344PUT/@@download/ENCFF344PUT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF298KRR bigBed narrowPeak conservative idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF112MBC 1066338 ENCODE Processing Pipeline e6a25f5593099bb9af05da044c4dcfec https://www.encodeproject.org/files/ENCFF298KRR/@@download/ENCFF298KRR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF226RAW bed narrowPeak optimal idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF143HUI, ENCFF292NEY, ENCFF401IHO 500926 ENCODE Processing Pipeline 26d04c290326d16bad54297f63204b21 https://www.encodeproject.org/files/ENCFF226RAW/@@download/ENCFF226RAW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695MFG bigBed narrowPeak optimal idr thresholded peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF226RAW 1139601 ENCODE Processing Pipeline 88d6de889014e8f7c8fbd4126b9e89d9 https://www.encodeproject.org/files/ENCFF695MFG/@@download/ENCFF695MFG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF040TFY bam unfiltered alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF218BEJ, ENCFF807MUK 1174264584 ENCODE Processing Pipeline 6a56c3bb7c63baae1b690750cb571517 https://www.encodeproject.org/files/ENCFF040TFY/@@download/ENCFF040TFY.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF609DET bam unfiltered alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF432PNM, ENCFF807MUK 1458644765 ENCODE Processing Pipeline 78072bab44879f2a966eb7ccc40cbba5 https://www.encodeproject.org/files/ENCFF609DET/@@download/ENCFF609DET.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF218BEJ fastq reads ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1099354219 Kevin White, UChicago f7d4020fa449d0400bfd836477b8722c SRA:SRR6214155 https://www.encodeproject.org/files/ENCFF218BEJ/@@download/ENCFF218BEJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF890NEW/ released control low read depth, low read depth, missing genetic modification characterization ENCFF432PNM fastq reads ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1368859858 Kevin White, UChicago 833dc5a349292d954912cfef23c91b41 SRA:SRR6214156 https://www.encodeproject.org/files/ENCFF432PNM/@@download/ENCFF432PNM.fastq.gz Illumina HiSeq 2500 /files/ENCFF890NEW/ released control low read depth, low read depth, missing genetic modification characterization ENCFF268SHC bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF218BEJ, ENCFF807MUK 891689288 ENCODE Processing Pipeline 1096b47f48f7befd110a0351b9ecc2a1 https://www.encodeproject.org/files/ENCFF268SHC/@@download/ENCFF268SHC.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF878ETO bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF432PNM, ENCFF807MUK 1111497884 ENCODE Processing Pipeline f447ac10254a5e68e9ba27984f007dc0 https://www.encodeproject.org/files/ENCFF878ETO/@@download/ENCFF878ETO.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF499PQM bigWig fold change over control ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF064YUE, ENCFF878ETO 413218209 ENCODE Processing Pipeline 401a60a0b59cc6f208b2b261f267e115 https://www.encodeproject.org/files/ENCFF499PQM/@@download/ENCFF499PQM.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF658PJX bigWig fold change over control ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF064YUE, ENCFF268SHC, ENCFF878ETO 649752340 ENCODE Processing Pipeline a4490f092bdf85e87cffc4451ce63bce https://www.encodeproject.org/files/ENCFF658PJX/@@download/ENCFF658PJX.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF863KXR bigBed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF521WEX 12996775 ENCODE Processing Pipeline 0f7483bd9f81a3ba94f87ac86078dc6f https://www.encodeproject.org/files/ENCFF863KXR/@@download/ENCFF863KXR.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF162HSS bigWig signal p-value ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF064YUE, ENCFF878ETO 257078785 ENCODE Processing Pipeline 173732932033cfc0d13555f4d9c05ed5 https://www.encodeproject.org/files/ENCFF162HSS/@@download/ENCFF162HSS.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF521WEX bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF064YUE, ENCFF268SHC 5731296 ENCODE Processing Pipeline 47f9f3c9fef8c244efac26f3a0b12900 https://www.encodeproject.org/files/ENCFF521WEX/@@download/ENCFF521WEX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF629GGT bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF064YUE, ENCFF878ETO 5713700 ENCODE Processing Pipeline a321149a06867510cb81062207589609 https://www.encodeproject.org/files/ENCFF629GGT/@@download/ENCFF629GGT.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF639WQU bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF064YUE, ENCFF268SHC, ENCFF878ETO 6409135 ENCODE Processing Pipeline 878d8b59cd7b47cfe4587112875e991e https://www.encodeproject.org/files/ENCFF639WQU/@@download/ENCFF639WQU.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF591EKJ bigWig signal p-value ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF064YUE, ENCFF268SHC, ENCFF878ETO 247101644 ENCODE Processing Pipeline 1fec3c8113e7cd830c440398f37174b4 https://www.encodeproject.org/files/ENCFF591EKJ/@@download/ENCFF591EKJ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF408SRM bigWig fold change over control ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF064YUE, ENCFF268SHC 352797128 ENCODE Processing Pipeline 58b211d06959fceb1985394162d9fb4d https://www.encodeproject.org/files/ENCFF408SRM/@@download/ENCFF408SRM.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF059MFA bigBed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF629GGT 12871815 ENCODE Processing Pipeline 3ef2f20fcc58e5c240da4504e00fc0aa https://www.encodeproject.org/files/ENCFF059MFA/@@download/ENCFF059MFA.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF300PFA bigWig signal p-value ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF064YUE, ENCFF268SHC 275170210 ENCODE Processing Pipeline bc47467ce93925d77f80233e48dd0f3d https://www.encodeproject.org/files/ENCFF300PFA/@@download/ENCFF300PFA.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF578ICV bigBed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF639WQU 12807731 ENCODE Processing Pipeline e92e1fdc2d6287e34301760bb7d8e93d https://www.encodeproject.org/files/ENCFF578ICV/@@download/ENCFF578ICV.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF676CZX bam unfiltered alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF218BEJ, ENCFF643CGH 1179061413 ENCODE Processing Pipeline 6b2cffcf614390b80ca94d46ed258c12 https://www.encodeproject.org/files/ENCFF676CZX/@@download/ENCFF676CZX.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF281VJS bam unfiltered alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF432PNM, ENCFF643CGH 1464458957 ENCODE Processing Pipeline 4249912ba9b7c323a28c82e82bd8436e https://www.encodeproject.org/files/ENCFF281VJS/@@download/ENCFF281VJS.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF834YLT bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF218BEJ, ENCFF643CGH 891319891 ENCODE Processing Pipeline 5ea822399507f8a5920a0175901a753f https://www.encodeproject.org/files/ENCFF834YLT/@@download/ENCFF834YLT.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF904PBR bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF432PNM, ENCFF643CGH 1110981804 ENCODE Processing Pipeline aa47149b65fc5cebb2a45f26dcd88279 https://www.encodeproject.org/files/ENCFF904PBR/@@download/ENCFF904PBR.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF764UNF bigWig fold change over control ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF358ZBU, ENCFF834YLT 351817594 ENCODE Processing Pipeline 695f27ccdda395bb0a36d2daf03d1bcd https://www.encodeproject.org/files/ENCFF764UNF/@@download/ENCFF764UNF.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF559IVA bigWig signal p-value ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF358ZBU, ENCFF834YLT 274571508 ENCODE Processing Pipeline b858dc039196090d7b9723bc0a8f9410 https://www.encodeproject.org/files/ENCFF559IVA/@@download/ENCFF559IVA.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF273YYT bigWig signal p-value ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF358ZBU, ENCFF834YLT, ENCFF904PBR 243971116 ENCODE Processing Pipeline 453de86dd080e37523f50361b4a58977 https://www.encodeproject.org/files/ENCFF273YYT/@@download/ENCFF273YYT.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF586HHM bigWig signal p-value ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF358ZBU, ENCFF904PBR 257965170 ENCODE Processing Pipeline ee26ea807043a720442647011f6c9903 https://www.encodeproject.org/files/ENCFF586HHM/@@download/ENCFF586HHM.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF054OME bigWig fold change over control ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF358ZBU, ENCFF904PBR 415651421 ENCODE Processing Pipeline b1b4c540a5d3c9297583fe737dada3e3 https://www.encodeproject.org/files/ENCFF054OME/@@download/ENCFF054OME.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF388NFD bigWig fold change over control ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF358ZBU, ENCFF834YLT, ENCFF904PBR 646643160 ENCODE Processing Pipeline fcd983e3841cd44d5652f78fb2a44686 https://www.encodeproject.org/files/ENCFF388NFD/@@download/ENCFF388NFD.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF687WBD bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF358ZBU, ENCFF834YLT 5521674 ENCODE Processing Pipeline 9fb037ae36e9c53e3b6155356816f47a https://www.encodeproject.org/files/ENCFF687WBD/@@download/ENCFF687WBD.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF317MIF bigBed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF398CHE 12809299 ENCODE Processing Pipeline 38d36513713da4f6283ed5b26bede768 https://www.encodeproject.org/files/ENCFF317MIF/@@download/ENCFF317MIF.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF649WHI bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF358ZBU, ENCFF904PBR 5495080 ENCODE Processing Pipeline 97c876afe1382a8e9c20e29de7d21e76 https://www.encodeproject.org/files/ENCFF649WHI/@@download/ENCFF649WHI.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF398CHE bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF358ZBU, ENCFF834YLT, ENCFF904PBR 6220193 ENCODE Processing Pipeline d33660160eefc5aca7140116c8d000f4 https://www.encodeproject.org/files/ENCFF398CHE/@@download/ENCFF398CHE.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF835IDR bigBed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF649WHI 12819067 ENCODE Processing Pipeline 9524bbb9c956ff86bb02b2a0a0b59a6d https://www.encodeproject.org/files/ENCFF835IDR/@@download/ENCFF835IDR.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF175IUD bed narrowPeak optimal idr thresholded peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF398CHE, ENCFF419RSJ, ENCFF649WHI, ENCFF687WBD 276928 ENCODE Processing Pipeline b3eac9d896ea336fa10a26c381005680 https://www.encodeproject.org/files/ENCFF175IUD/@@download/ENCFF175IUD.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF945PNA bigBed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF687WBD 12934341 ENCODE Processing Pipeline 1ef27883317f34b997f0b1391e966ba0 https://www.encodeproject.org/files/ENCFF945PNA/@@download/ENCFF945PNA.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF965DFV bigBed narrowPeak optimal idr thresholded peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF175IUD 567818 ENCODE Processing Pipeline 7764da83af8a6fb3c264a2fe6ba7c9e2 https://www.encodeproject.org/files/ENCFF965DFV/@@download/ENCFF965DFV.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF452SPE bed narrowPeak optimal idr thresholded peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF521WEX, ENCFF629GGT, ENCFF639WQU 235803 ENCODE Processing Pipeline 7c83d0cc8201d650834cf642030fa17c https://www.encodeproject.org/files/ENCFF452SPE/@@download/ENCFF452SPE.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF797AAQ bed narrowPeak conservative idr thresholded peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF521WEX, ENCFF629GGT, ENCFF639WQU 225949 ENCODE Processing Pipeline 6e88bb45e6fc9cfcfe210b7a58aef722 https://www.encodeproject.org/files/ENCFF797AAQ/@@download/ENCFF797AAQ.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF195AVK bigBed narrowPeak conservative idr thresholded peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF797AAQ 400996 ENCODE Processing Pipeline e2f7c04fa66698ef7c23bc71e5ba1b19 https://www.encodeproject.org/files/ENCFF195AVK/@@download/ENCFF195AVK.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF498WQS bigBed narrowPeak optimal idr thresholded peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF452SPE 412519 ENCODE Processing Pipeline 0161b75881cf7c4b1c7e42a87f62eeb8 https://www.encodeproject.org/files/ENCFF498WQS/@@download/ENCFF498WQS.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF753KXC fastq reads ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF775HOD 2961139950 Michael Snyder, Stanford fe5057c557abbb0a489a8cf6ee6c0bf8 SRA:SRR6212641 https://www.encodeproject.org/files/ENCFF753KXC/@@download/ENCFF753KXC.fastq.gz Illumina HiSeq 4000 /files/ENCFF398FSP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF775HOD fastq reads ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF753KXC 3539527572 Michael Snyder, Stanford 600da0b2e8f0b9d595006076a6fc9e64 SRA:SRR6212641 https://www.encodeproject.org/files/ENCFF775HOD/@@download/ENCFF775HOD.fastq.gz Illumina HiSeq 4000 /files/ENCFF993FKF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF587OOE bam unfiltered alignments ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF753KXC, ENCFF775HOD, ENCFF807MUK 5904415674 ENCODE Processing Pipeline 4263bef2a42b991a674d2c4063c0f203 https://www.encodeproject.org/files/ENCFF587OOE/@@download/ENCFF587OOE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF877MCP bam alignments ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF753KXC, ENCFF775HOD, ENCFF807MUK 4157705131 ENCODE Processing Pipeline dbb3854f962ccd5cfcfc49020258ff40 https://www.encodeproject.org/files/ENCFF877MCP/@@download/ENCFF877MCP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF335MCG bam alignments ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF753KXC, ENCFF775HOD 4161367426 ENCODE Processing Pipeline c3efbd6d52adc20de822c713e2e9c979 https://www.encodeproject.org/files/ENCFF335MCG/@@download/ENCFF335MCG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF432KGO bam unfiltered alignments ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF753KXC, ENCFF775HOD 5909745024 ENCODE Processing Pipeline 43b09a1970f78a27107d608788390c30 https://www.encodeproject.org/files/ENCFF432KGO/@@download/ENCFF432KGO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF416SCN bigWig signal p-value ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF240WVD, ENCFF877MCP 1385028696 ENCODE Processing Pipeline df67c4b8ebf429e8d15be708bc45087a https://www.encodeproject.org/files/ENCFF416SCN/@@download/ENCFF416SCN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF987VRF bed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF240WVD, ENCFF877MCP 6556307 ENCODE Processing Pipeline 675cf18322652dc745d98cbba4ba01cc https://www.encodeproject.org/files/ENCFF987VRF/@@download/ENCFF987VRF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF269QCG bigWig fold change over control ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF240WVD, ENCFF877MCP 1362917582 ENCODE Processing Pipeline 270e4675d86429427c73ae34318ea22b https://www.encodeproject.org/files/ENCFF269QCG/@@download/ENCFF269QCG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF752DHH bigBed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF987VRF 11479451 ENCODE Processing Pipeline 6a74bacbcf76d3d8886fdcbb77f62d7f https://www.encodeproject.org/files/ENCFF752DHH/@@download/ENCFF752DHH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF011MGD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF470NNW 1039334 ENCODE Processing Pipeline 56bfff4c9c40aabf4c3ed0af2af5adef https://www.encodeproject.org/files/ENCFF011MGD/@@download/ENCFF011MGD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF470NNW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF987VRF 582606 ENCODE Processing Pipeline 23b53d174773a361d53ff9c311ab2029 https://www.encodeproject.org/files/ENCFF470NNW/@@download/ENCFF470NNW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF032VOD bigWig signal p-value ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF335MCG, ENCFF572VZL 1397269481 ENCODE Processing Pipeline 24d909c0daab78a89f505b80e2a54c4c https://www.encodeproject.org/files/ENCFF032VOD/@@download/ENCFF032VOD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF268COV bigWig fold change over control ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF335MCG, ENCFF572VZL 1371081508 ENCODE Processing Pipeline 77eeb0a5a1a1916ff841b46844ab65da https://www.encodeproject.org/files/ENCFF268COV/@@download/ENCFF268COV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF934LQZ bed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF335MCG, ENCFF572VZL 6493556 ENCODE Processing Pipeline 66526a5a9ceb9e9a47c2960731306949 https://www.encodeproject.org/files/ENCFF934LQZ/@@download/ENCFF934LQZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF777GBA bigBed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF934LQZ 11421391 ENCODE Processing Pipeline db7f3375d1abc6a3ba6ca2d9ccd8475b https://www.encodeproject.org/files/ENCFF777GBA/@@download/ENCFF777GBA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF350AMQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF934LQZ 562694 ENCODE Processing Pipeline d1404163985e5e9fda90f8a7595949fe https://www.encodeproject.org/files/ENCFF350AMQ/@@download/ENCFF350AMQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF639KXY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF350AMQ 1011383 ENCODE Processing Pipeline 0e61bf8dde4713e690408d86daae1885 https://www.encodeproject.org/files/ENCFF639KXY/@@download/ENCFF639KXY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF968OEO fastq reads ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF167BYO 3171236405 Michael Snyder, Stanford 8f4c81b03715d9db4fa7325c454f2cbb SRA:SRR6212886 https://www.encodeproject.org/files/ENCFF968OEO/@@download/ENCFF968OEO.fastq.gz Illumina HiSeq 4000 /files/ENCFF689DPJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF167BYO fastq reads ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF968OEO 2623983647 Michael Snyder, Stanford 3271cf0d19861071117eaaa2987cd060 SRA:SRR6212886 https://www.encodeproject.org/files/ENCFF167BYO/@@download/ENCFF167BYO.fastq.gz Illumina HiSeq 4000 /files/ENCFF017QNZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF541AWB bam alignments ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF167BYO, ENCFF807MUK, ENCFF968OEO 3284604545 ENCODE Processing Pipeline 34e9c17d3f9a216362562ba164f19025 https://www.encodeproject.org/files/ENCFF541AWB/@@download/ENCFF541AWB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF064JUN bam unfiltered alignments ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF167BYO, ENCFF807MUK, ENCFF968OEO 5266681208 ENCODE Processing Pipeline 87a5bbc6d9352c55023204bdb1ccece9 https://www.encodeproject.org/files/ENCFF064JUN/@@download/ENCFF064JUN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF034TFU bam alignments ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF167BYO, ENCFF643CGH, ENCFF968OEO 3287830424 ENCODE Processing Pipeline 388ab70f7d9236e14538f2432f97dd6c https://www.encodeproject.org/files/ENCFF034TFU/@@download/ENCFF034TFU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF087JTH bam unfiltered alignments ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF167BYO, ENCFF643CGH, ENCFF968OEO 5268141110 ENCODE Processing Pipeline ba907b8ab6a7d7e49f1b4b2ad62d65e8 https://www.encodeproject.org/files/ENCFF087JTH/@@download/ENCFF087JTH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF596ARM bigWig signal p-value ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF541AWB, ENCFF856ESK 1207555535 ENCODE Processing Pipeline ef997c1521b560ea6d3e9f24c27bcc32 https://www.encodeproject.org/files/ENCFF596ARM/@@download/ENCFF596ARM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF407QZN bigWig fold change over control ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF541AWB, ENCFF856ESK 1102361999 ENCODE Processing Pipeline 1dae0907113f08c95e917459547e7e26 https://www.encodeproject.org/files/ENCFF407QZN/@@download/ENCFF407QZN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728JUW bed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF541AWB, ENCFF856ESK 5692158 ENCODE Processing Pipeline 2be009be9c312bb21aba7458718b3fca https://www.encodeproject.org/files/ENCFF728JUW/@@download/ENCFF728JUW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF589JXQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF517HGL 456033 ENCODE Processing Pipeline 1b4368b97e1a819ba3cc7f323f2a7f12 https://www.encodeproject.org/files/ENCFF589JXQ/@@download/ENCFF589JXQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF265JAY bigBed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF728JUW 11326789 ENCODE Processing Pipeline 836e94e9c86fea27478d608fbefd555a https://www.encodeproject.org/files/ENCFF265JAY/@@download/ENCFF265JAY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF517HGL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF728JUW 227897 ENCODE Processing Pipeline 9cd4eefff7f666ff7a3c7b4cf15d919f https://www.encodeproject.org/files/ENCFF517HGL/@@download/ENCFF517HGL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF644AON bigWig signal p-value ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF034TFU, ENCFF575CYL 1109128814 ENCODE Processing Pipeline 53bd310edb4b54e35e2e6219fa49535a https://www.encodeproject.org/files/ENCFF644AON/@@download/ENCFF644AON.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF993HEZ bigBed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF217FNA 11346765 ENCODE Processing Pipeline c032ff2e6483941850af450149efd35c https://www.encodeproject.org/files/ENCFF993HEZ/@@download/ENCFF993HEZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF590MYW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF668UDC 451219 ENCODE Processing Pipeline 452da9f2cef6b1163c103ac6ef501b19 https://www.encodeproject.org/files/ENCFF590MYW/@@download/ENCFF590MYW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF606IEQ bigWig fold change over control ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF034TFU, ENCFF575CYL 1112586565 ENCODE Processing Pipeline 40aa6d039e3d0169d29ea958d2d32556 https://www.encodeproject.org/files/ENCFF606IEQ/@@download/ENCFF606IEQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF217FNA bed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF034TFU, ENCFF575CYL 5693037 ENCODE Processing Pipeline 8c6eb9860ae6968449159696817a617e https://www.encodeproject.org/files/ENCFF217FNA/@@download/ENCFF217FNA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF668UDC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF217FNA, ENCFF419RSJ 222591 ENCODE Processing Pipeline f040fa5e357289b4028a0b7cf32a08b1 https://www.encodeproject.org/files/ENCFF668UDC/@@download/ENCFF668UDC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF842TRZ bam unfiltered alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 50 ENCFF379LXN, ENCFF807MUK, ENCFF978YQI 840993186 ENCODE Processing Pipeline 25126dc081827d9402ef861a963cea12 https://www.encodeproject.org/files/ENCFF842TRZ/@@download/ENCFF842TRZ.bam hg19 released low read depth, missing genetic modification characterization ENCFF604BYO bam unfiltered alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 50 ENCFF807MUK, ENCFF814FHF, ENCFF841KDB 790053812 ENCODE Processing Pipeline e4953fc783c8c969e21b5e11cfeec5db https://www.encodeproject.org/files/ENCFF604BYO/@@download/ENCFF604BYO.bam hg19 released low read depth, missing genetic modification characterization ENCFF814FHF fastq reads ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 621796491 Kevin White, UChicago 1acbc197590cce33f7b3a29338e0f6aa SRA:SRR6213878 https://www.encodeproject.org/files/ENCFF814FHF/@@download/ENCFF814FHF.fastq.gz Illumina HiSeq 2500 /files/ENCFF159WTO/ released low read depth, missing genetic modification characterization ENCFF978YQI fastq reads ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 655926298 Kevin White, UChicago a7664b3ed1e1154d09419a3892747741 SRA:SRR6213880 https://www.encodeproject.org/files/ENCFF978YQI/@@download/ENCFF978YQI.fastq.gz Illumina HiSeq 2500 /files/ENCFF159WTO/ released low read depth, missing genetic modification characterization ENCFF841KDB fastq reads ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 99519554 Kevin White, UChicago 1d20ac8edcbd004b338ee649160996de SRA:SRR6213879 https://www.encodeproject.org/files/ENCFF841KDB/@@download/ENCFF841KDB.fastq.gz Illumina HiSeq 2000 /files/ENCFF159WTO/ released low read depth, missing genetic modification characterization ENCFF379LXN fastq reads ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 109466868 Kevin White, UChicago 24319377b532a2f26bdb61967b8db2e1 SRA:SRR6213881 https://www.encodeproject.org/files/ENCFF379LXN/@@download/ENCFF379LXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF159WTO/ released low read depth, missing genetic modification characterization ENCFF764PZX bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 50 ENCFF379LXN, ENCFF807MUK, ENCFF978YQI 659448304 ENCODE Processing Pipeline 254f1cbbd19b531b098c1ec14c204cd0 https://www.encodeproject.org/files/ENCFF764PZX/@@download/ENCFF764PZX.bam hg19 released low read depth, missing genetic modification characterization ENCFF947CVN bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 50 ENCFF807MUK, ENCFF814FHF, ENCFF841KDB 614327383 ENCODE Processing Pipeline 3b8ced888df67bbd778fed0755ea5503 https://www.encodeproject.org/files/ENCFF947CVN/@@download/ENCFF947CVN.bam hg19 released low read depth, missing genetic modification characterization ENCFF973NIW bigWig signal p-value ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF764PZX, ENCFF947CVN, ENCFF977MTW 631246773 ENCODE Processing Pipeline 835f0ae66e8e209bb5db4eec64d0f173 https://www.encodeproject.org/files/ENCFF973NIW/@@download/ENCFF973NIW.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF622JMW bigWig signal p-value ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF947CVN, ENCFF977MTW 462884194 ENCODE Processing Pipeline 8326d6398a031f6e3460bf0c371dcc31 https://www.encodeproject.org/files/ENCFF622JMW/@@download/ENCFF622JMW.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF415KDK bigWig fold change over control ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF947CVN, ENCFF977MTW 372136023 ENCODE Processing Pipeline aa2fb14be1c6face927bab525c83e5c3 https://www.encodeproject.org/files/ENCFF415KDK/@@download/ENCFF415KDK.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF496HOU bigWig fold change over control ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF764PZX, ENCFF947CVN, ENCFF977MTW 620610673 ENCODE Processing Pipeline 822e104f0ba906199c051abf8aba3544 https://www.encodeproject.org/files/ENCFF496HOU/@@download/ENCFF496HOU.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF355WLJ bigWig signal p-value ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF764PZX, ENCFF977MTW 521599985 ENCODE Processing Pipeline 8bc88ebb92bfc421c82a94746580a0ac https://www.encodeproject.org/files/ENCFF355WLJ/@@download/ENCFF355WLJ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF401TSJ bigWig fold change over control ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF764PZX, ENCFF977MTW 399500588 ENCODE Processing Pipeline 271705405819d993b3d62f26c382321b https://www.encodeproject.org/files/ENCFF401TSJ/@@download/ENCFF401TSJ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF830WFG bigBed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF061VCB 12862341 ENCODE Processing Pipeline d6d7fd54da19aa6d0469522a92d24de7 https://www.encodeproject.org/files/ENCFF830WFG/@@download/ENCFF830WFG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF820OCS bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF764PZX, ENCFF947CVN, ENCFF977MTW 6972441 ENCODE Processing Pipeline ae5666be81653ceec822d96358b12f0c https://www.encodeproject.org/files/ENCFF820OCS/@@download/ENCFF820OCS.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF061VCB bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF947CVN, ENCFF977MTW 6359309 ENCODE Processing Pipeline 3ec09c55ea1f7b4322b25ffae57fbbd1 https://www.encodeproject.org/files/ENCFF061VCB/@@download/ENCFF061VCB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF866TCF bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF764PZX, ENCFF977MTW 6282247 ENCODE Processing Pipeline 5266e1b14addcb13437e5be3c60e2a4a https://www.encodeproject.org/files/ENCFF866TCF/@@download/ENCFF866TCF.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF635PHA bigBed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF866TCF 12873592 ENCODE Processing Pipeline 6b8c9d2b646df44d766f9de638ab89fc https://www.encodeproject.org/files/ENCFF635PHA/@@download/ENCFF635PHA.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF826YPF bigBed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF820OCS 12818334 ENCODE Processing Pipeline 1b048c07a8b3d1f3ee57ec0984c5d105 https://www.encodeproject.org/files/ENCFF826YPF/@@download/ENCFF826YPF.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF212GET bam unfiltered alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 50 ENCFF379LXN, ENCFF643CGH, ENCFF978YQI 843566615 ENCODE Processing Pipeline 109022ad30be112f8152c33b322a0901 https://www.encodeproject.org/files/ENCFF212GET/@@download/ENCFF212GET.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF458OMJ bam unfiltered alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF814FHF, ENCFF841KDB 792292876 ENCODE Processing Pipeline 24067140341af0110717de3718d56428 https://www.encodeproject.org/files/ENCFF458OMJ/@@download/ENCFF458OMJ.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF687QLR bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF814FHF, ENCFF841KDB 613900307 ENCODE Processing Pipeline 3398aa630c4f920f614978ac8b440647 https://www.encodeproject.org/files/ENCFF687QLR/@@download/ENCFF687QLR.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF191EJM bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 50 ENCFF379LXN, ENCFF643CGH, ENCFF978YQI 658974040 ENCODE Processing Pipeline fed53bc02bbdfdda0f801c8688cbd5e1 https://www.encodeproject.org/files/ENCFF191EJM/@@download/ENCFF191EJM.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF877EYQ bigWig signal p-value ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF115YFR, ENCFF687QLR 497867682 ENCODE Processing Pipeline df4f2fc53319f6a2ded8e63d665964c0 https://www.encodeproject.org/files/ENCFF877EYQ/@@download/ENCFF877EYQ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF717MBE bigWig fold change over control ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF115YFR, ENCFF687QLR 389683251 ENCODE Processing Pipeline fae1fb96d4fbad29a00733f80d17bf18 https://www.encodeproject.org/files/ENCFF717MBE/@@download/ENCFF717MBE.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF080QEG bigWig signal p-value ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115YFR, ENCFF191EJM, ENCFF687QLR 640766582 ENCODE Processing Pipeline 9371044337ffb1e6e08c56ceab8f42c2 https://www.encodeproject.org/files/ENCFF080QEG/@@download/ENCFF080QEG.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF690JPX bigWig signal p-value ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF115YFR, ENCFF191EJM 528609741 ENCODE Processing Pipeline e9fd7cb47c162bfb2c9c8e13439f9d4f https://www.encodeproject.org/files/ENCFF690JPX/@@download/ENCFF690JPX.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF052CLG bigWig fold change over control ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF115YFR, ENCFF191EJM 398461205 ENCODE Processing Pipeline 80592b0007070267aa439b23e034797e https://www.encodeproject.org/files/ENCFF052CLG/@@download/ENCFF052CLG.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF563CUY bigWig fold change over control ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115YFR, ENCFF191EJM, ENCFF687QLR 627393042 ENCODE Processing Pipeline 27d7e85d5199eea886c946754435f5a8 https://www.encodeproject.org/files/ENCFF563CUY/@@download/ENCFF563CUY.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF508PVH bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF115YFR, ENCFF687QLR 6202262 ENCODE Processing Pipeline d629a3b5e8680573c197930792f42565 https://www.encodeproject.org/files/ENCFF508PVH/@@download/ENCFF508PVH.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF991YRK bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF115YFR, ENCFF191EJM 6073686 ENCODE Processing Pipeline 745e75a1f4c905160243c9c517dba314 https://www.encodeproject.org/files/ENCFF991YRK/@@download/ENCFF991YRK.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF757JLA bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115YFR, ENCFF191EJM, ENCFF687QLR 6827776 ENCODE Processing Pipeline e644636532c450a2487d99a9a949e823 https://www.encodeproject.org/files/ENCFF757JLA/@@download/ENCFF757JLA.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF158SEE bigBed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF508PVH 12863369 ENCODE Processing Pipeline d27b7190d3481459d248ea9d86327e96 https://www.encodeproject.org/files/ENCFF158SEE/@@download/ENCFF158SEE.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF928XUE bigBed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF991YRK 12848397 ENCODE Processing Pipeline dd08670b5173c2aece1217e1dcbe0576 https://www.encodeproject.org/files/ENCFF928XUE/@@download/ENCFF928XUE.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF545HVR bigBed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF757JLA 12827838 ENCODE Processing Pipeline 0b8daa873fa6b8cff52a75432ee2626e https://www.encodeproject.org/files/ENCFF545HVR/@@download/ENCFF545HVR.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF165GSE bed narrowPeak optimal idr thresholded peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF508PVH, ENCFF757JLA, ENCFF991YRK 198673 ENCODE Processing Pipeline 2149e2bff9cdd51af53a0c0635250c02 https://www.encodeproject.org/files/ENCFF165GSE/@@download/ENCFF165GSE.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF299SDS bigBed narrowPeak optimal idr thresholded peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF165GSE 507554 ENCODE Processing Pipeline dc5a88353bb9ed541c66546c70ca7704 https://www.encodeproject.org/files/ENCFF299SDS/@@download/ENCFF299SDS.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF040AYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF853TZC 310247 ENCODE Processing Pipeline 6d9e0349c0f775edb38856006bfad39b https://www.encodeproject.org/files/ENCFF040AYZ/@@download/ENCFF040AYZ.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF853TZC bed narrowPeak optimal idr thresholded peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF061VCB, ENCFF820OCS, ENCFF866TCF 161658 ENCODE Processing Pipeline 76dff59260974ea4959eabcd3f275a6a https://www.encodeproject.org/files/ENCFF853TZC/@@download/ENCFF853TZC.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF621MLU fastq reads ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF365JJX 3594932229 Michael Snyder, Stanford 19358f4ea544d4e9ca4584790dde207b SRA:SRR6213575 https://www.encodeproject.org/files/ENCFF621MLU/@@download/ENCFF621MLU.fastq.gz Illumina HiSeq 4000 /files/ENCFF488PCP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF365JJX fastq reads ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF621MLU 3087784718 Michael Snyder, Stanford 1bd814c25a21ce1207ea4b4af967f299 SRA:SRR6213575 https://www.encodeproject.org/files/ENCFF365JJX/@@download/ENCFF365JJX.fastq.gz Illumina HiSeq 4000 /files/ENCFF673LIB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF654JWP bam unfiltered alignments ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF365JJX, ENCFF621MLU, ENCFF807MUK 6028232182 ENCODE Processing Pipeline 2eb5b11832dbf5ca7e1333225a620dbd https://www.encodeproject.org/files/ENCFF654JWP/@@download/ENCFF654JWP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF007JEJ bam alignments ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF365JJX, ENCFF621MLU, ENCFF807MUK 4509805070 ENCODE Processing Pipeline a99ab6ff3a9aab2bdecd52ba792875d1 https://www.encodeproject.org/files/ENCFF007JEJ/@@download/ENCFF007JEJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF437ECF bam unfiltered alignments ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF365JJX, ENCFF621MLU, ENCFF643CGH 6031629000 ENCODE Processing Pipeline 24e3297e7f92ef7892d1508c28c47e76 https://www.encodeproject.org/files/ENCFF437ECF/@@download/ENCFF437ECF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF379OME bam alignments ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF365JJX, ENCFF621MLU, ENCFF643CGH 4513948076 ENCODE Processing Pipeline a40348761b5f9fe002bf3b00bfbee84a https://www.encodeproject.org/files/ENCFF379OME/@@download/ENCFF379OME.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF451XDP bigWig signal p-value ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF007JEJ, ENCFF764UTK 1441381931 ENCODE Processing Pipeline cb99b3d86ca63165088953c44576661a https://www.encodeproject.org/files/ENCFF451XDP/@@download/ENCFF451XDP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF291VPI bigWig fold change over control ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF007JEJ, ENCFF764UTK 1412550564 ENCODE Processing Pipeline 0deed9220d5b10ed159e7e8d43fa55c7 https://www.encodeproject.org/files/ENCFF291VPI/@@download/ENCFF291VPI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF927GGF bed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF007JEJ, ENCFF764UTK 6766708 ENCODE Processing Pipeline ae781c3f65e4bf41cd2ee0cd17f786da https://www.encodeproject.org/files/ENCFF927GGF/@@download/ENCFF927GGF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF131SRF bigBed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF927GGF 13854286 ENCODE Processing Pipeline 650b6f48fbbc55a712432e064854342d https://www.encodeproject.org/files/ENCFF131SRF/@@download/ENCFF131SRF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF155OYZ bigWig signal p-value ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF295YCD, ENCFF379OME 1441540522 ENCODE Processing Pipeline fca3fee788d3145cb0504509042833e0 https://www.encodeproject.org/files/ENCFF155OYZ/@@download/ENCFF155OYZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF587LBC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF927GGF 859653 ENCODE Processing Pipeline 7449544ceaec3b1430764a81f0e71cd0 https://www.encodeproject.org/files/ENCFF587LBC/@@download/ENCFF587LBC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF671HZE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF587LBC 1413162 ENCODE Processing Pipeline f958d027e52036f7d66c293a99a05c32 https://www.encodeproject.org/files/ENCFF671HZE/@@download/ENCFF671HZE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF632ENA bigWig fold change over control ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF295YCD, ENCFF379OME 1413294149 ENCODE Processing Pipeline e2be0615ad0d458c96ece0299ce64332 https://www.encodeproject.org/files/ENCFF632ENA/@@download/ENCFF632ENA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF135EPC bed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF295YCD, ENCFF379OME 6761456 ENCODE Processing Pipeline 3ad89978f11104ccee8217d1f7942f24 https://www.encodeproject.org/files/ENCFF135EPC/@@download/ENCFF135EPC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF505VMB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF135EPC, ENCFF419RSJ 857565 ENCODE Processing Pipeline 6384886c5c5acda143d471df57a697c7 https://www.encodeproject.org/files/ENCFF505VMB/@@download/ENCFF505VMB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF900VUB bigBed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF135EPC 13859141 ENCODE Processing Pipeline 59dc5d6ac542203bf5d9b5629d22e221 https://www.encodeproject.org/files/ENCFF900VUB/@@download/ENCFF900VUB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF831KTG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF505VMB 1411962 ENCODE Processing Pipeline a33209b35d6a917be7ea483b3fc3565e https://www.encodeproject.org/files/ENCFF831KTG/@@download/ENCFF831KTG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF097RQE fastq reads ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 568319124 Xiang-Dong Fu, UCSD 5aef5bdcabd4f017f830999b3aa57125 SRA:SRR6213114 https://www.encodeproject.org/files/ENCFF097RQE/@@download/ENCFF097RQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF833ZOA/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF924FSA fastq reads ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 489144290 Xiang-Dong Fu, UCSD 4c728995f60302ae979c8cc309dc040b SRA:SRR6213113 https://www.encodeproject.org/files/ENCFF924FSA/@@download/ENCFF924FSA.fastq.gz Illumina HiSeq 2000 /files/ENCFF183RWB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF913GCP bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF924FSA 398735147 ENCODE Processing Pipeline 129881e0ff8526fd9f09b3843017b562 https://www.encodeproject.org/files/ENCFF913GCP/@@download/ENCFF913GCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF984PYA bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF097RQE, ENCFF807MUK 470911199 ENCODE Processing Pipeline 106a93d329219711196c00af29f16ebc https://www.encodeproject.org/files/ENCFF984PYA/@@download/ENCFF984PYA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF149NGQ bigWig signal p-value ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP 684365952 ENCODE Processing Pipeline 022e24779574df7c13ed78fe5755a0b2 https://www.encodeproject.org/files/ENCFF149NGQ/@@download/ENCFF149NGQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF621AJS bigWig fold change over control ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF413LCN, ENCFF466LEC, ENCFF984PYA 436495776 ENCODE Processing Pipeline aa7d9a102592b4b638f23e0ef20df522 https://www.encodeproject.org/files/ENCFF621AJS/@@download/ENCFF621AJS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF617MUG bigWig signal p-value ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF413LCN, ENCFF466LEC, ENCFF984PYA 639042634 ENCODE Processing Pipeline 3345068b215e20132ba516f1d53fdf73 https://www.encodeproject.org/files/ENCFF617MUG/@@download/ENCFF617MUG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF153EMA bigWig fold change over control ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP 388503321 ENCODE Processing Pipeline 2bcd3bfad97a2311354f67969fd06b60 https://www.encodeproject.org/files/ENCFF153EMA/@@download/ENCFF153EMA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF535GLW bam unfiltered alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF097RQE, ENCFF643CGH 751780422 ENCODE Processing Pipeline 9283ceb60f55566a710e81169e8730a5 https://www.encodeproject.org/files/ENCFF535GLW/@@download/ENCFF535GLW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF998EHO bam unfiltered alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF643CGH, ENCFF924FSA 643671923 ENCODE Processing Pipeline 49e74dfd46b9ce88fe45dafd8ee5d9a5 https://www.encodeproject.org/files/ENCFF998EHO/@@download/ENCFF998EHO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF203MUO bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF097RQE, ENCFF643CGH 470446133 ENCODE Processing Pipeline 04a226253e3075ebdcce504e61dd57cf https://www.encodeproject.org/files/ENCFF203MUO/@@download/ENCFF203MUO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF618MHM bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF924FSA 398324919 ENCODE Processing Pipeline 729acd0138fa487ea2f63e7ed8f514ff https://www.encodeproject.org/files/ENCFF618MHM/@@download/ENCFF618MHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF130TFL bigWig signal p-value ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF092OEQ, ENCFF618MHM, ENCFF936VXD 665634847 ENCODE Processing Pipeline 3b938cafaa46bfaaca007ac6cac1bef5 https://www.encodeproject.org/files/ENCFF130TFL/@@download/ENCFF130TFL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF144MBH bigWig signal p-value ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF092OEQ, ENCFF203MUO, ENCFF936VXD 673662577 ENCODE Processing Pipeline eb65d69eb4b436ffcb56124332150105 https://www.encodeproject.org/files/ENCFF144MBH/@@download/ENCFF144MBH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF673PEO bigWig signal p-value ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF092OEQ, ENCFF203MUO, ENCFF618MHM, ENCFF936VXD 759771144 ENCODE Processing Pipeline 91eeb7275e35b0193973573ea2f6b114 https://www.encodeproject.org/files/ENCFF673PEO/@@download/ENCFF673PEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF421BQG bigWig fold change over control ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF092OEQ, ENCFF203MUO, ENCFF936VXD 433874306 ENCODE Processing Pipeline 3615a8478f24c517c025eddf64557b59 https://www.encodeproject.org/files/ENCFF421BQG/@@download/ENCFF421BQG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF905TUF bigWig fold change over control ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF092OEQ, ENCFF618MHM, ENCFF936VXD 389579632 ENCODE Processing Pipeline 5dd761edbdcead4020da848e45b61884 https://www.encodeproject.org/files/ENCFF905TUF/@@download/ENCFF905TUF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF976IUW bigWig fold change over control ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF092OEQ, ENCFF203MUO, ENCFF618MHM, ENCFF936VXD 665818753 ENCODE Processing Pipeline e17f5c496e447991bb122484a3473930 https://www.encodeproject.org/files/ENCFF976IUW/@@download/ENCFF976IUW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF729PYU bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF092OEQ, ENCFF203MUO, ENCFF936VXD 5373720 ENCODE Processing Pipeline 3d415db4b3d62259eae684baa975101b https://www.encodeproject.org/files/ENCFF729PYU/@@download/ENCFF729PYU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF234GXW bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF092OEQ, ENCFF618MHM, ENCFF936VXD 5517711 ENCODE Processing Pipeline b15a8c1be18d7adab65e7c964409d99b https://www.encodeproject.org/files/ENCFF234GXW/@@download/ENCFF234GXW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF180ORT bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF092OEQ, ENCFF203MUO, ENCFF618MHM, ENCFF936VXD 6517254 ENCODE Processing Pipeline f3a997d89cbbbc378eaf5e58d124dcd9 https://www.encodeproject.org/files/ENCFF180ORT/@@download/ENCFF180ORT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF738TZB bigBed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF729PYU 13185022 ENCODE Processing Pipeline 04c6a9e7492032a6f8cd4a312cca36ae https://www.encodeproject.org/files/ENCFF738TZB/@@download/ENCFF738TZB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF863RCB bigBed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF234GXW 13173501 ENCODE Processing Pipeline 11c1cab2fdaa1cadc2acabfce78a4657 https://www.encodeproject.org/files/ENCFF863RCB/@@download/ENCFF863RCB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF316NWG bigBed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF180ORT 13309119 ENCODE Processing Pipeline 0c99449eba5d5a9c71c93a01bf960c4e https://www.encodeproject.org/files/ENCFF316NWG/@@download/ENCFF316NWG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF823CQK bed narrowPeak optimal idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF180ORT, ENCFF234GXW, ENCFF419RSJ, ENCFF729PYU 96411 ENCODE Processing Pipeline 23a93e1a57c7dd694ed44cfa4c5e72c1 https://www.encodeproject.org/files/ENCFF823CQK/@@download/ENCFF823CQK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF426IHW bed narrowPeak conservative idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF180ORT, ENCFF234GXW, ENCFF419RSJ, ENCFF729PYU 93604 ENCODE Processing Pipeline 38988106db508f9fe7709ca9439e9657 https://www.encodeproject.org/files/ENCFF426IHW/@@download/ENCFF426IHW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF901NLW bigBed narrowPeak conservative idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF426IHW 243254 ENCODE Processing Pipeline a5ff94c747bcaa308b03e0ec021bd017 https://www.encodeproject.org/files/ENCFF901NLW/@@download/ENCFF901NLW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF844WQC bigBed narrowPeak optimal idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF823CQK 247741 ENCODE Processing Pipeline 8e855220908dd5ec7f25ebacb5f50231 https://www.encodeproject.org/files/ENCFF844WQC/@@download/ENCFF844WQC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF753KMF bigWig fold change over control ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP, ENCFF984PYA 677500988 ENCODE Processing Pipeline 113a45a51cf3290ae551a7e232aee8d6 https://www.encodeproject.org/files/ENCFF753KMF/@@download/ENCFF753KMF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF041UXA bigWig signal p-value ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP, ENCFF984PYA 840201912 ENCODE Processing Pipeline fb35a57d4109fc6ca6cbfeadfb497185 https://www.encodeproject.org/files/ENCFF041UXA/@@download/ENCFF041UXA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF609LOZ bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP 5522784 ENCODE Processing Pipeline 90f8e7d8022f73e44109afeff47bf187 https://www.encodeproject.org/files/ENCFF609LOZ/@@download/ENCFF609LOZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF264HYE bigBed narrowPeak conservative idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF219YST 184739 ENCODE Processing Pipeline cd37cf3580d017c98de340c6717dbd8c https://www.encodeproject.org/files/ENCFF264HYE/@@download/ENCFF264HYE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF028TZK bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP, ENCFF984PYA 6537634 ENCODE Processing Pipeline 93dc2328c6392cb99f4502781d628657 https://www.encodeproject.org/files/ENCFF028TZK/@@download/ENCFF028TZK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF219YST bed narrowPeak conservative idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF028TZK, ENCFF609LOZ, ENCFF882WGE 83629 ENCODE Processing Pipeline f744641641fba917b771b772cfb98d2a https://www.encodeproject.org/files/ENCFF219YST/@@download/ENCFF219YST.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF134NMW bed narrowPeak optimal idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF028TZK, ENCFF609LOZ, ENCFF882WGE 90103 ENCODE Processing Pipeline e27dcf77f1ba6a47765799b317b359ae https://www.encodeproject.org/files/ENCFF134NMW/@@download/ENCFF134NMW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF602CRB bigBed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF882WGE 13220716 ENCODE Processing Pipeline 825cb007527bdd92dfabffa00e5d3bc4 https://www.encodeproject.org/files/ENCFF602CRB/@@download/ENCFF602CRB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF135HSY bigBed narrowPeak optimal idr thresholded peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF134NMW 192741 ENCODE Processing Pipeline 8e40cc37ff6bd72fd73e638a49d6354c https://www.encodeproject.org/files/ENCFF135HSY/@@download/ENCFF135HSY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF882WGE bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF413LCN, ENCFF466LEC, ENCFF984PYA 5668214 ENCODE Processing Pipeline bb6cceac098c9c18a285ddaac2ab0c6c https://www.encodeproject.org/files/ENCFF882WGE/@@download/ENCFF882WGE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF084HXP bigBed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF609LOZ 13160144 ENCODE Processing Pipeline 423b47c3fb7caf0e70e690b14b645770 https://www.encodeproject.org/files/ENCFF084HXP/@@download/ENCFF084HXP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF083GXT bigBed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF028TZK 13297790 ENCODE Processing Pipeline ac464002fa60e2b69ff41f1a54319369 https://www.encodeproject.org/files/ENCFF083GXT/@@download/ENCFF083GXT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF485NVX bam unfiltered alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF924FSA 640873708 ENCODE Processing Pipeline 47d7100f40badb2def7fdcb08e1c3973 https://www.encodeproject.org/files/ENCFF485NVX/@@download/ENCFF485NVX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF614DLD bam unfiltered alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF097RQE, ENCFF807MUK 748371190 ENCODE Processing Pipeline a9f71f5baa8641c3e0672d4625101e15 https://www.encodeproject.org/files/ENCFF614DLD/@@download/ENCFF614DLD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF263EXZ fastq reads ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF489JBV 2125903558 Michael Snyder, Stanford 3edf50632cde5d798a25ca2dc3ff27d4 SRA:SRR6212938 https://www.encodeproject.org/files/ENCFF263EXZ/@@download/ENCFF263EXZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF194EWF/ released antibody characterized with exemption ENCFF489JBV fastq reads ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF263EXZ 2385578987 Michael Snyder, Stanford c78f1ae51c8c64c899a13af566052f4b SRA:SRR6212938 https://www.encodeproject.org/files/ENCFF489JBV/@@download/ENCFF489JBV.fastq.gz Illumina HiSeq 4000 /files/ENCFF203FOV/ released antibody characterized with exemption ENCFF305HRI bam unfiltered alignments ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF263EXZ, ENCFF489JBV, ENCFF807MUK 4463737909 ENCODE Processing Pipeline 8a24b4c65c232668129a4ad563154f87 https://www.encodeproject.org/files/ENCFF305HRI/@@download/ENCFF305HRI.bam hg19 released antibody characterized with exemption ENCFF312ULR bam alignments ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF263EXZ, ENCFF489JBV, ENCFF807MUK 3661224717 ENCODE Processing Pipeline 6322d8334b5f7fe74dceb1834b4e055d https://www.encodeproject.org/files/ENCFF312ULR/@@download/ENCFF312ULR.bam hg19 released antibody characterized with exemption ENCFF543QNM bam unfiltered alignments ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF263EXZ, ENCFF489JBV, ENCFF643CGH 4470515687 ENCODE Processing Pipeline 1c2e9fbfbdad6898fe6fff07861d1d95 https://www.encodeproject.org/files/ENCFF543QNM/@@download/ENCFF543QNM.bam GRCh38 released antibody characterized with exemption ENCFF403PJI bam alignments ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF263EXZ, ENCFF489JBV, ENCFF643CGH 3663834907 ENCODE Processing Pipeline 67051d021c9fed4ecd9911f4f539dee9 https://www.encodeproject.org/files/ENCFF403PJI/@@download/ENCFF403PJI.bam GRCh38 released antibody characterized with exemption ENCFF424SMT bigWig signal p-value ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF027GOA, ENCFF312ULR 1063564056 ENCODE Processing Pipeline f1231e844039cceafec25c054030181a https://www.encodeproject.org/files/ENCFF424SMT/@@download/ENCFF424SMT.bigWig hg19 released antibody characterized with exemption ENCFF233CJY bigWig fold change over control ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF027GOA, ENCFF312ULR 1153418416 ENCODE Processing Pipeline f76bd2244e9054c2b207b39c16da6e4f https://www.encodeproject.org/files/ENCFF233CJY/@@download/ENCFF233CJY.bigWig hg19 released antibody characterized with exemption ENCFF698DYH bed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF027GOA, ENCFF312ULR 6053666 ENCODE Processing Pipeline b4dae9b1fe658119f852ada3a60b4b10 https://www.encodeproject.org/files/ENCFF698DYH/@@download/ENCFF698DYH.bed.gz hg19 released antibody characterized with exemption ENCFF047PYH bigBed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF698DYH 11692758 ENCODE Processing Pipeline 882dc74d82b7a4ca9533c6c7455f57c2 https://www.encodeproject.org/files/ENCFF047PYH/@@download/ENCFF047PYH.bigBed hg19 released antibody characterized with exemption ENCFF985ZJL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF698DYH 553977 ENCODE Processing Pipeline e3878fa26d134e14be951c1c19dc0f31 https://www.encodeproject.org/files/ENCFF985ZJL/@@download/ENCFF985ZJL.bed.gz hg19 released antibody characterized with exemption ENCFF997SLK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF985ZJL 1035770 ENCODE Processing Pipeline f0114f6b45126303ff625e1032a62898 https://www.encodeproject.org/files/ENCFF997SLK/@@download/ENCFF997SLK.bigBed hg19 released antibody characterized with exemption ENCFF856BHK bigWig signal p-value ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF403PJI, ENCFF418QRN 1102074109 ENCODE Processing Pipeline 2155be04e0a9d9f3ccd646f626f99ff2 https://www.encodeproject.org/files/ENCFF856BHK/@@download/ENCFF856BHK.bigWig GRCh38 released antibody characterized with exemption ENCFF965ZSY bed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF403PJI, ENCFF418QRN 6056875 ENCODE Processing Pipeline f050b2ba4e5dd938874ef6b8ca1e252b https://www.encodeproject.org/files/ENCFF965ZSY/@@download/ENCFF965ZSY.bed.gz GRCh38 released antibody characterized with exemption ENCFF117XJK bigWig fold change over control ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF403PJI, ENCFF418QRN 1154122474 ENCODE Processing Pipeline 619eb7706141bdd669faad06abfbfc36 https://www.encodeproject.org/files/ENCFF117XJK/@@download/ENCFF117XJK.bigWig GRCh38 released antibody characterized with exemption ENCFF915QDI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF174CEI 1046188 ENCODE Processing Pipeline aa9f4ee6c9a973241dbde83ac05289e7 https://www.encodeproject.org/files/ENCFF915QDI/@@download/ENCFF915QDI.bigBed GRCh38 released antibody characterized with exemption ENCFF171MSJ bigBed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF965ZSY 11710279 ENCODE Processing Pipeline 3c41ecf0feb46f76c752c817baa507fe https://www.encodeproject.org/files/ENCFF171MSJ/@@download/ENCFF171MSJ.bigBed GRCh38 released antibody characterized with exemption ENCFF174CEI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF965ZSY 559262 ENCODE Processing Pipeline 8489c840d566ed663aad7e5a242ef5c9 https://www.encodeproject.org/files/ENCFF174CEI/@@download/ENCFF174CEI.bed.gz GRCh38 released antibody characterized with exemption ENCFF770VIU fastq reads ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 5393575335 Richard Myers, HAIB c082eb360018914aeaadda5eeda4efc6 SRA:SRR5339108 https://www.encodeproject.org/files/ENCFF770VIU/@@download/ENCFF770VIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF192BLY fastq reads ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1525741462 Richard Myers, HAIB 09a922e34e382bd375651d3d9c20da83 SRA:SRR5339109 https://www.encodeproject.org/files/ENCFF192BLY/@@download/ENCFF192BLY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF549OTD bam unfiltered alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF192BLY, ENCFF643CGH 1811008077 ENCODE Processing Pipeline 45242998902f17ccf898497f17707281 https://www.encodeproject.org/files/ENCFF549OTD/@@download/ENCFF549OTD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF526FAB bam unfiltered alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF192BLY, ENCFF807MUK 1807291096 ENCODE Processing Pipeline b2b0cf98832fd6e776c4a49c18d0e5c5 https://www.encodeproject.org/files/ENCFF526FAB/@@download/ENCFF526FAB.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF572QQB bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF192BLY, ENCFF643CGH 1373685596 ENCODE Processing Pipeline 35979cf18bf392f6d4af514cd7cf798a https://www.encodeproject.org/files/ENCFF572QQB/@@download/ENCFF572QQB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF139ZPI bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF192BLY, ENCFF807MUK 1372881631 ENCODE Processing Pipeline e55d996943ad268df8b9d7f20eb77183 https://www.encodeproject.org/files/ENCFF139ZPI/@@download/ENCFF139ZPI.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF891KWV bam unfiltered alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF770VIU 5642590871 ENCODE Processing Pipeline 7c77ada4ca993bc6f62012086caa4eea https://www.encodeproject.org/files/ENCFF891KWV/@@download/ENCFF891KWV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF491YLU bam unfiltered alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF770VIU, ENCFF807MUK 5633809837 ENCODE Processing Pipeline 8a139353fd6d75c36606c793be57a63f https://www.encodeproject.org/files/ENCFF491YLU/@@download/ENCFF491YLU.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501SZR bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF770VIU 4298388374 ENCODE Processing Pipeline 67cb79530454eddc4b89355775f82c40 https://www.encodeproject.org/files/ENCFF501SZR/@@download/ENCFF501SZR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378LSL bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF770VIU, ENCFF807MUK 4295679973 ENCODE Processing Pipeline 9471bb53afbd36bdcd8ec3377df3e87e https://www.encodeproject.org/files/ENCFF378LSL/@@download/ENCFF378LSL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF267SQQ bigWig signal p-value ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF501SZR 645492526 ENCODE Processing Pipeline 940c366a8c54f8094213fb3e6aef1c65 https://www.encodeproject.org/files/ENCFF267SQQ/@@download/ENCFF267SQQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF439ZCP bigWig signal p-value ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF572QQB 498125207 ENCODE Processing Pipeline 84789f9bf05e759981cbab200d5d233d https://www.encodeproject.org/files/ENCFF439ZCP/@@download/ENCFF439ZCP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF864OFR bigWig signal p-value ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF501SZR, ENCFF572QQB 617603274 ENCODE Processing Pipeline 46dad6024e372f2338b8dcf26178c353 https://www.encodeproject.org/files/ENCFF864OFR/@@download/ENCFF864OFR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF393GXT bigWig fold change over control ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF501SZR 1297767693 ENCODE Processing Pipeline 1c65694211ea31d11f3ea848fd4ad3c9 https://www.encodeproject.org/files/ENCFF393GXT/@@download/ENCFF393GXT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF426VVH bigWig fold change over control ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF572QQB 534098763 ENCODE Processing Pipeline 3eeb6b9018a9866566a51cae2555a9a3 https://www.encodeproject.org/files/ENCFF426VVH/@@download/ENCFF426VVH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF464BRV bigWig fold change over control ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF501SZR, ENCFF572QQB 1573159805 ENCODE Processing Pipeline f1a87f3fb2497f274d9b311ae7f0ab2f https://www.encodeproject.org/files/ENCFF464BRV/@@download/ENCFF464BRV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF008GNI bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF501SZR, ENCFF572QQB 7120444 ENCODE Processing Pipeline bf4b4dc5f6b24517bd96583bd8bd74b4 https://www.encodeproject.org/files/ENCFF008GNI/@@download/ENCFF008GNI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF424PAS bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF501SZR 7105163 ENCODE Processing Pipeline 2deaf2d096cf9123742a7532fa315fb0 https://www.encodeproject.org/files/ENCFF424PAS/@@download/ENCFF424PAS.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF480NPE bigBed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF424PAS 12837598 ENCODE Processing Pipeline 1e3199c39001ea04c8a6a36fffc226df https://www.encodeproject.org/files/ENCFF480NPE/@@download/ENCFF480NPE.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF326AOA bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF572QQB 5800562 ENCODE Processing Pipeline 58b881dafbc15a91db5cb1dcc5ad16c7 https://www.encodeproject.org/files/ENCFF326AOA/@@download/ENCFF326AOA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF314CDT bed narrowPeak optimal idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF008GNI, ENCFF326AOA, ENCFF419RSJ, ENCFF424PAS 767931 ENCODE Processing Pipeline 9e4a2fb7aa969d0d66627d9cd56e8fc3 https://www.encodeproject.org/files/ENCFF314CDT/@@download/ENCFF314CDT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF080XOV bigBed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF326AOA 13171882 ENCODE Processing Pipeline 7c786949950ff0f29ca9e6b9b7ec822f https://www.encodeproject.org/files/ENCFF080XOV/@@download/ENCFF080XOV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF054UUL bigBed narrowPeak optimal idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF314CDT 1398246 ENCODE Processing Pipeline 6c0e774fb3c2fe26910d537bbdb03ff8 https://www.encodeproject.org/files/ENCFF054UUL/@@download/ENCFF054UUL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF196PLV bigBed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF008GNI 12842304 ENCODE Processing Pipeline 641eb3ef9afa2e364ca7277c7f1d5682 https://www.encodeproject.org/files/ENCFF196PLV/@@download/ENCFF196PLV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF467MXY bed narrowPeak conservative idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF008GNI, ENCFF326AOA, ENCFF419RSJ, ENCFF424PAS 527453 ENCODE Processing Pipeline f6c5c6c9d193ff2a9c0a32059d0ee61e https://www.encodeproject.org/files/ENCFF467MXY/@@download/ENCFF467MXY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF909UHB bigBed narrowPeak conservative idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF467MXY 1045405 ENCODE Processing Pipeline 95267c740ef0581bb9fbb36bae3162cc https://www.encodeproject.org/files/ENCFF909UHB/@@download/ENCFF909UHB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF382DLP bigWig signal p-value ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF139ZPI, ENCFF203ABR 1140725714 ENCODE Processing Pipeline cc80d27b4105437b96b79f7e68cf63b2 https://www.encodeproject.org/files/ENCFF382DLP/@@download/ENCFF382DLP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028LFW bigWig signal p-value ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378LSL 1828221793 ENCODE Processing Pipeline 2acbda83dc75f56d707b7651a0b63521 https://www.encodeproject.org/files/ENCFF028LFW/@@download/ENCFF028LFW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF925FOQ bigWig signal p-value ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF139ZPI, ENCFF203ABR, ENCFF378LSL 2151982450 ENCODE Processing Pipeline 201b23c9dc2852365ae109721fb46a39 https://www.encodeproject.org/files/ENCFF925FOQ/@@download/ENCFF925FOQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF490AKA bigWig fold change over control ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378LSL 1897721186 ENCODE Processing Pipeline f961b157301ec62a147538c1b71f31f9 https://www.encodeproject.org/files/ENCFF490AKA/@@download/ENCFF490AKA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF035RJG bigWig fold change over control ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF139ZPI, ENCFF203ABR 1007036847 ENCODE Processing Pipeline 4b5163862a08d328c65a8e182750839f https://www.encodeproject.org/files/ENCFF035RJG/@@download/ENCFF035RJG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF322HKP bigWig fold change over control ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF139ZPI, ENCFF203ABR, ENCFF378LSL 2169420331 ENCODE Processing Pipeline 1e1a35886a4af17cb42c8c1b1ef1c334 https://www.encodeproject.org/files/ENCFF322HKP/@@download/ENCFF322HKP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF596FKZ bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF139ZPI, ENCFF203ABR 6483936 ENCODE Processing Pipeline 644d402386f8931742215280bbac6f4e https://www.encodeproject.org/files/ENCFF596FKZ/@@download/ENCFF596FKZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF640ZKF bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378LSL 6979957 ENCODE Processing Pipeline c2c01123b6dabcc3e4d151306ba84a09 https://www.encodeproject.org/files/ENCFF640ZKF/@@download/ENCFF640ZKF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF605RYJ bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF139ZPI, ENCFF203ABR, ENCFF378LSL 6955227 ENCODE Processing Pipeline eb6bcb72c4026db6feb4418cf75d701c https://www.encodeproject.org/files/ENCFF605RYJ/@@download/ENCFF605RYJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF073JQC bigBed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF596FKZ 13223907 ENCODE Processing Pipeline c6df329e1b81649e6e15a69cdb918446 https://www.encodeproject.org/files/ENCFF073JQC/@@download/ENCFF073JQC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF691MHR bigBed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF605RYJ 12761317 ENCODE Processing Pipeline 8f7b5b6e83ab8c08ae1432f6c24b1db0 https://www.encodeproject.org/files/ENCFF691MHR/@@download/ENCFF691MHR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF186OEQ bigBed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF640ZKF 12737782 ENCODE Processing Pipeline 2647c6aee6d774386a0f6d8f597b7289 https://www.encodeproject.org/files/ENCFF186OEQ/@@download/ENCFF186OEQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF664GVU bigBed narrowPeak conservative idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF633AYW 909354 ENCODE Processing Pipeline 6ba165cb20a506b6bae212ecd70d009a https://www.encodeproject.org/files/ENCFF664GVU/@@download/ENCFF664GVU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF254JVA bigBed narrowPeak optimal idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF408ILT 1440044 ENCODE Processing Pipeline 35fb10f187ba7966562b2b5e2615ae88 https://www.encodeproject.org/files/ENCFF254JVA/@@download/ENCFF254JVA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF408ILT bed narrowPeak optimal idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF596FKZ, ENCFF605RYJ, ENCFF640ZKF 732319 ENCODE Processing Pipeline de35f95c45167b6d59b20b7b1c9f8e9e https://www.encodeproject.org/files/ENCFF408ILT/@@download/ENCFF408ILT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF633AYW bed narrowPeak conservative idr thresholded peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF596FKZ, ENCFF605RYJ, ENCFF640ZKF 538758 ENCODE Processing Pipeline df55f1554f8cfd3c6ccc7f8ee9b6e8b8 https://www.encodeproject.org/files/ENCFF633AYW/@@download/ENCFF633AYW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF118SMB bam unfiltered alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF654QNS, ENCFF807MUK, ENCFF910ZOL 3962320288 ENCODE Processing Pipeline 06f51b67aa08e9a7472c4c13af59b0b4 https://www.encodeproject.org/files/ENCFF118SMB/@@download/ENCFF118SMB.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF051DWX bam unfiltered alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF593NHM, ENCFF781IDS, ENCFF807MUK 4860532720 ENCODE Processing Pipeline 05e71a86242109688dbca7e3b62a6b88 https://www.encodeproject.org/files/ENCFF051DWX/@@download/ENCFF051DWX.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF593NHM fastq reads ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF781IDS 2294902688 Michael Snyder, Stanford 9308870ec266a5b995027dc96a0948b3 https://www.encodeproject.org/files/ENCFF593NHM/@@download/ENCFF593NHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF910ZOL fastq reads ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF654QNS 1774357558 Michael Snyder, Stanford 56602de7a2472eb8b15a6ab9c5a8201f https://www.encodeproject.org/files/ENCFF910ZOL/@@download/ENCFF910ZOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF654QNS fastq reads ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF910ZOL 1842351601 Michael Snyder, Stanford a56b22c9447b6bb056da0251fd8718b9 https://www.encodeproject.org/files/ENCFF654QNS/@@download/ENCFF654QNS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF781IDS fastq reads ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF593NHM 2190830121 Michael Snyder, Stanford 568cd56f3e32d6a2f2e5032570715666 https://www.encodeproject.org/files/ENCFF781IDS/@@download/ENCFF781IDS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF382EGR bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF654QNS, ENCFF807MUK, ENCFF910ZOL 3147576886 ENCODE Processing Pipeline 7a1542925e703d0dd8b33939f2a01609 https://www.encodeproject.org/files/ENCFF382EGR/@@download/ENCFF382EGR.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF572AJL bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF593NHM, ENCFF781IDS, ENCFF807MUK 3880532012 ENCODE Processing Pipeline 2854f0bbb8d2ced78cc7d8208d3dc0fc https://www.encodeproject.org/files/ENCFF572AJL/@@download/ENCFF572AJL.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF937NHI bigWig signal p-value ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF382EGR, ENCFF581ZJL 1053294125 ENCODE Processing Pipeline 15f4186cd55297a16459b121311c9f98 https://www.encodeproject.org/files/ENCFF937NHI/@@download/ENCFF937NHI.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF172QSO bigWig signal p-value ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF572AJL 1126093449 ENCODE Processing Pipeline 8d6cdf4462b246a7460427e6ded2639a https://www.encodeproject.org/files/ENCFF172QSO/@@download/ENCFF172QSO.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF486EQH bigWig signal p-value ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF382EGR, ENCFF572AJL, ENCFF581ZJL 1646860723 ENCODE Processing Pipeline 9c5507623391c3984b65f8dba552db95 https://www.encodeproject.org/files/ENCFF486EQH/@@download/ENCFF486EQH.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF532JVS bigWig fold change over control ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF382EGR, ENCFF581ZJL 1027936614 ENCODE Processing Pipeline e7016cebaca62d5bff8402c74e169a6a https://www.encodeproject.org/files/ENCFF532JVS/@@download/ENCFF532JVS.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF679CXA bigWig fold change over control ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF572AJL 1118179445 ENCODE Processing Pipeline 7cdf1bb182fb4f59df5ea09b2f2e7938 https://www.encodeproject.org/files/ENCFF679CXA/@@download/ENCFF679CXA.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF990HHK bigWig fold change over control ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF382EGR, ENCFF572AJL, ENCFF581ZJL 1995683139 ENCODE Processing Pipeline 52a1fa32863ceaee0dbd1ed3fa97136e https://www.encodeproject.org/files/ENCFF990HHK/@@download/ENCFF990HHK.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF755JDJ bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF382EGR, ENCFF581ZJL 6642143 ENCODE Processing Pipeline cac3983772b5e92e19a70e7c9c65c348 https://www.encodeproject.org/files/ENCFF755JDJ/@@download/ENCFF755JDJ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF765UQI bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF572AJL 6943544 ENCODE Processing Pipeline e0584d3c2b4152b57ee1011564dc3c67 https://www.encodeproject.org/files/ENCFF765UQI/@@download/ENCFF765UQI.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF530RTW bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF382EGR, ENCFF572AJL, ENCFF581ZJL 7246105 ENCODE Processing Pipeline 749d648811406cb9c58b2dd809531f68 https://www.encodeproject.org/files/ENCFF530RTW/@@download/ENCFF530RTW.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF908OPW bigBed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF755JDJ 13316864 ENCODE Processing Pipeline 125e368f5d0b9ea99d3ae9dcac9fbfde https://www.encodeproject.org/files/ENCFF908OPW/@@download/ENCFF908OPW.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF778KYW bigBed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF530RTW 13141113 ENCODE Processing Pipeline 04d188eb296816a901a90d99eb3d0ae5 https://www.encodeproject.org/files/ENCFF778KYW/@@download/ENCFF778KYW.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF572IYX bigBed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF765UQI 13275632 ENCODE Processing Pipeline 46297e14029ca8d0bea7a254e32c002a https://www.encodeproject.org/files/ENCFF572IYX/@@download/ENCFF572IYX.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF360FDG bed narrowPeak conservative idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF530RTW, ENCFF755JDJ, ENCFF765UQI 222473 ENCODE Processing Pipeline dba6a936088a59de82750bfac6621490 https://www.encodeproject.org/files/ENCFF360FDG/@@download/ENCFF360FDG.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF671WXJ bigBed narrowPeak conservative idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF360FDG 447012 ENCODE Processing Pipeline 9dbead515750e244d8d14671cc14446b https://www.encodeproject.org/files/ENCFF671WXJ/@@download/ENCFF671WXJ.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF708BTH bed narrowPeak optimal idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF530RTW, ENCFF755JDJ, ENCFF765UQI 319090 ENCODE Processing Pipeline c398b933bc4c8d8b03045d41ec90fb85 https://www.encodeproject.org/files/ENCFF708BTH/@@download/ENCFF708BTH.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF896DFT bigBed narrowPeak optimal idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF708BTH 714099 ENCODE Processing Pipeline f771f8608f4547f3414ac4c7118ddc1e https://www.encodeproject.org/files/ENCFF896DFT/@@download/ENCFF896DFT.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF320WRH bam unfiltered alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF593NHM, ENCFF643CGH, ENCFF781IDS 4862019193 ENCODE Processing Pipeline 5726780632dd0d77ec2cc58717348f9b https://www.encodeproject.org/files/ENCFF320WRH/@@download/ENCFF320WRH.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF985IEI bam unfiltered alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF654QNS, ENCFF910ZOL 3964145630 ENCODE Processing Pipeline 989db5088b811bc1bba3737c7af4b62a https://www.encodeproject.org/files/ENCFF985IEI/@@download/ENCFF985IEI.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF390IDA bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF654QNS, ENCFF910ZOL 3149534164 ENCODE Processing Pipeline 54b70fef96956bcb5f9ae0a275fb49cd https://www.encodeproject.org/files/ENCFF390IDA/@@download/ENCFF390IDA.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF368KUM bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF593NHM, ENCFF643CGH, ENCFF781IDS 3884069079 ENCODE Processing Pipeline 8612bf5ee5feb9bf780532d3958d918e https://www.encodeproject.org/files/ENCFF368KUM/@@download/ENCFF368KUM.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF109MDP bigWig signal p-value ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF390IDA, ENCFF910IKB 1018204867 ENCODE Processing Pipeline f89f0310322251c33906c8fa8f10e0e8 https://www.encodeproject.org/files/ENCFF109MDP/@@download/ENCFF109MDP.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF330LQH bigWig signal p-value ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF368KUM 1061753663 ENCODE Processing Pipeline 2383f679522e55e0cd4d880e2590ad88 https://www.encodeproject.org/files/ENCFF330LQH/@@download/ENCFF330LQH.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF680HET bigWig signal p-value ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF368KUM, ENCFF390IDA, ENCFF910IKB 2037825861 ENCODE Processing Pipeline b13e480de26c03c9281a919240b2749c https://www.encodeproject.org/files/ENCFF680HET/@@download/ENCFF680HET.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF997XTE bigWig fold change over control ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF390IDA, ENCFF910IKB 1030249702 ENCODE Processing Pipeline aafa70e8b26749407b0ac6097934103a https://www.encodeproject.org/files/ENCFF997XTE/@@download/ENCFF997XTE.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF555YHQ bigWig fold change over control ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF368KUM 1114203404 ENCODE Processing Pipeline 012810c003f070a33fc45cf9c231f8ca https://www.encodeproject.org/files/ENCFF555YHQ/@@download/ENCFF555YHQ.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF177SPZ bigWig fold change over control ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF368KUM, ENCFF390IDA, ENCFF910IKB 2005478752 ENCODE Processing Pipeline d63ff194004e54e742dabe7a1befce8e https://www.encodeproject.org/files/ENCFF177SPZ/@@download/ENCFF177SPZ.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF696NTE bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF390IDA, ENCFF910IKB 6504424 ENCODE Processing Pipeline a5c89753960d9524c7f2f85173ed030a https://www.encodeproject.org/files/ENCFF696NTE/@@download/ENCFF696NTE.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF006QBN bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF368KUM 6855473 ENCODE Processing Pipeline ff94298f3a06d0edc06b98645735658a https://www.encodeproject.org/files/ENCFF006QBN/@@download/ENCFF006QBN.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF400AJE bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF368KUM, ENCFF390IDA, ENCFF910IKB 7186506 ENCODE Processing Pipeline 127102417da85b0bd34501a6dd300cc9 https://www.encodeproject.org/files/ENCFF400AJE/@@download/ENCFF400AJE.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF407FUI bigBed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF696NTE 13318759 ENCODE Processing Pipeline f15b333dc7b905062c7dde3ba201d570 https://www.encodeproject.org/files/ENCFF407FUI/@@download/ENCFF407FUI.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF741BUF bigBed narrowPeak optimal idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF008JJE 701450 ENCODE Processing Pipeline 8a6cf422bbc9f9dfda23c74abdaee7af https://www.encodeproject.org/files/ENCFF741BUF/@@download/ENCFF741BUF.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF210NPY bigBed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF006QBN 13279802 ENCODE Processing Pipeline 2a1f96339d7246a221fa0f20513bd33a https://www.encodeproject.org/files/ENCFF210NPY/@@download/ENCFF210NPY.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF378XMN bigBed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF400AJE 13095080 ENCODE Processing Pipeline 8a90904e98387f630eb8629d5aa09d1d https://www.encodeproject.org/files/ENCFF378XMN/@@download/ENCFF378XMN.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF208AKZ bed narrowPeak conservative idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF006QBN, ENCFF400AJE, ENCFF419RSJ, ENCFF696NTE 209221 ENCODE Processing Pipeline 78e48223f35125a8f6d295e574eb13f7 https://www.encodeproject.org/files/ENCFF208AKZ/@@download/ENCFF208AKZ.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF777PJG bigBed narrowPeak conservative idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF208AKZ 431569 ENCODE Processing Pipeline 754654800e2b0038ba79ea93a817a0bc https://www.encodeproject.org/files/ENCFF777PJG/@@download/ENCFF777PJG.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF008JJE bed narrowPeak optimal idr thresholded peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF006QBN, ENCFF400AJE, ENCFF419RSJ, ENCFF696NTE 305852 ENCODE Processing Pipeline 27f9539a3aad2ab0b3e625a001f1492d https://www.encodeproject.org/files/ENCFF008JJE/@@download/ENCFF008JJE.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF855WMN fastq reads ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 1 100 paired-ended 1 ENCFF423WZR 2607246600 Michael Snyder, Stanford 6f7b27cc0ec96210d255212c3ff2542b SRA:SRR6214198 https://www.encodeproject.org/files/ENCFF855WMN/@@download/ENCFF855WMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF423WZR fastq reads ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 1 100 paired-ended 2 ENCFF855WMN 2651574058 Michael Snyder, Stanford 21c29fadf91d2ae6f78082b09e939a97 SRA:SRR6214198 https://www.encodeproject.org/files/ENCFF423WZR/@@download/ENCFF423WZR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF012IRR fastq reads ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 1 100 paired-ended 1 ENCFF286CDN 2419977021 Michael Snyder, Stanford 3694c90599ac9df5c5e21041371d9cd6 SRA:SRR6214197 https://www.encodeproject.org/files/ENCFF012IRR/@@download/ENCFF012IRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF286CDN fastq reads ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 1 100 paired-ended 2 ENCFF012IRR 2464807001 Michael Snyder, Stanford 1ae9299d63ba57a608d7cad3e16622dd SRA:SRR6214197 https://www.encodeproject.org/files/ENCFF286CDN/@@download/ENCFF286CDN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF078PMY bam unfiltered alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 100 ENCFF012IRR, ENCFF286CDN, ENCFF643CGH 5333821077 ENCODE Processing Pipeline c574da70ebfa0521b7647623af59c349 https://www.encodeproject.org/files/ENCFF078PMY/@@download/ENCFF078PMY.bam GRCh38 released ENCFF684JEQ bam unfiltered alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 100 ENCFF423WZR, ENCFF643CGH, ENCFF855WMN 5727932964 ENCODE Processing Pipeline c3b04c1729ce62b3f6f610a8e5a17793 https://www.encodeproject.org/files/ENCFF684JEQ/@@download/ENCFF684JEQ.bam GRCh38 released ENCFF613EZB bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 100 ENCFF012IRR, ENCFF286CDN, ENCFF643CGH 4199731468 ENCODE Processing Pipeline 165b7d7292a679fe933ddfc4e03d3862 https://www.encodeproject.org/files/ENCFF613EZB/@@download/ENCFF613EZB.bam GRCh38 released ENCFF609PQQ bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 100 ENCFF423WZR, ENCFF643CGH, ENCFF855WMN 4582980884 ENCODE Processing Pipeline 278a86ac087e09008240562bdf11f3f0 https://www.encodeproject.org/files/ENCFF609PQQ/@@download/ENCFF609PQQ.bam GRCh38 released ENCFF975MTF bigWig signal p-value ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF426RDP, ENCFF613EZB 1070616818 ENCODE Processing Pipeline c88ba865320cd1f58e35280ce68aea9b https://www.encodeproject.org/files/ENCFF975MTF/@@download/ENCFF975MTF.bigWig GRCh38 released ENCFF027RTD bigWig signal p-value ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF291AFY, ENCFF609PQQ 1132631245 ENCODE Processing Pipeline a1f06e25e9a23addd4c737ace0e2e3c8 https://www.encodeproject.org/files/ENCFF027RTD/@@download/ENCFF027RTD.bigWig GRCh38 released ENCFF224WVV bigWig signal p-value ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF609PQQ, ENCFF613EZB 1873192160 ENCODE Processing Pipeline 367119c7888de3619c7c7bc5d5180969 https://www.encodeproject.org/files/ENCFF224WVV/@@download/ENCFF224WVV.bigWig GRCh38 released ENCFF155CJX bigWig fold change over control ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF426RDP, ENCFF613EZB 1006934931 ENCODE Processing Pipeline ef3761fdaad79242b14d0b415070dc01 https://www.encodeproject.org/files/ENCFF155CJX/@@download/ENCFF155CJX.bigWig GRCh38 released ENCFF476CLD bed narrowPeak conservative idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF171HEV, ENCFF228NEB, ENCFF419RSJ, ENCFF504SFP 110215 ENCODE Processing Pipeline 5e8f4c5c429e696753852a3e36d4fb70 https://www.encodeproject.org/files/ENCFF476CLD/@@download/ENCFF476CLD.bed.gz GRCh38 released ENCFF518NOF bigBed narrowPeak optimal idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF191SBE 386008 ENCODE Processing Pipeline 4e59a1ec700ed8ee9976209e8be1f1e1 https://www.encodeproject.org/files/ENCFF518NOF/@@download/ENCFF518NOF.bigBed GRCh38 released ENCFF171HEV bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF426RDP, ENCFF613EZB 6007972 ENCODE Processing Pipeline 3e5b246c67385c8d1bae8d5e103c649d https://www.encodeproject.org/files/ENCFF171HEV/@@download/ENCFF171HEV.bed.gz GRCh38 released ENCFF504SFP bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF609PQQ, ENCFF613EZB 7120746 ENCODE Processing Pipeline fb55d7895b7f79b53b474c9777ed4a2d https://www.encodeproject.org/files/ENCFF504SFP/@@download/ENCFF504SFP.bed.gz GRCh38 released ENCFF012GQD bigWig fold change over control ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF291AFY, ENCFF609PQQ 1130963988 ENCODE Processing Pipeline 1824c0695ecaf72bdaab782c6a2d4833 https://www.encodeproject.org/files/ENCFF012GQD/@@download/ENCFF012GQD.bigWig GRCh38 released ENCFF845CAW bigWig fold change over control ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF609PQQ, ENCFF613EZB 1999132150 ENCODE Processing Pipeline 2573791822a3bbd72272f943551d254a https://www.encodeproject.org/files/ENCFF845CAW/@@download/ENCFF845CAW.bigWig GRCh38 released ENCFF268NNQ bigBed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF171HEV 11242859 ENCODE Processing Pipeline b07315e18525b76330e2720fdc5c2692 https://www.encodeproject.org/files/ENCFF268NNQ/@@download/ENCFF268NNQ.bigBed GRCh38 released ENCFF540GRH bigBed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF228NEB 11177583 ENCODE Processing Pipeline 45f03f0cfd31a33ab6a721ee65cf0c1a https://www.encodeproject.org/files/ENCFF540GRH/@@download/ENCFF540GRH.bigBed GRCh38 released ENCFF668BXN bigBed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF504SFP 13259945 ENCODE Processing Pipeline b7cd41d37d50c0691378298dd929dd5a https://www.encodeproject.org/files/ENCFF668BXN/@@download/ENCFF668BXN.bigBed GRCh38 released ENCFF247JIR bigBed narrowPeak conservative idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF476CLD 252948 ENCODE Processing Pipeline 85cad970cc6d65765b3bbfba0faafdd6 https://www.encodeproject.org/files/ENCFF247JIR/@@download/ENCFF247JIR.bigBed GRCh38 released ENCFF228NEB bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF291AFY, ENCFF609PQQ 6232916 ENCODE Processing Pipeline ba6cd610b7228c61649e8a4376bd800a https://www.encodeproject.org/files/ENCFF228NEB/@@download/ENCFF228NEB.bed.gz GRCh38 released ENCFF191SBE bed narrowPeak optimal idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF171HEV, ENCFF228NEB, ENCFF419RSJ, ENCFF504SFP 197919 ENCODE Processing Pipeline fa356bb2cfe2dbda01ef3630623d5322 https://www.encodeproject.org/files/ENCFF191SBE/@@download/ENCFF191SBE.bed.gz GRCh38 released ENCFF985EHD bam unfiltered alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 100 ENCFF012IRR, ENCFF286CDN, ENCFF807MUK 5327325085 ENCODE Processing Pipeline 30d6b3a410e973b3062ccfb4b33c590b https://www.encodeproject.org/files/ENCFF985EHD/@@download/ENCFF985EHD.bam hg19 released ENCFF616QRN bam unfiltered alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 100 ENCFF423WZR, ENCFF807MUK, ENCFF855WMN 5720427971 ENCODE Processing Pipeline 84a3db9146ae21980cd4fb767ae7179d https://www.encodeproject.org/files/ENCFF616QRN/@@download/ENCFF616QRN.bam hg19 released ENCFF394QUX bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 100 ENCFF423WZR, ENCFF807MUK, ENCFF855WMN 4576426948 ENCODE Processing Pipeline f53a9a8d586b15ac9ebca664aa960462 https://www.encodeproject.org/files/ENCFF394QUX/@@download/ENCFF394QUX.bam hg19 released ENCFF402RYM bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 100 ENCFF012IRR, ENCFF286CDN, ENCFF807MUK 4194194548 ENCODE Processing Pipeline 9573b7b887aed1adac7622c2a227a6e5 https://www.encodeproject.org/files/ENCFF402RYM/@@download/ENCFF402RYM.bam hg19 released ENCFF907XGK bigWig signal p-value ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF049MPQ, ENCFF394QUX 1148136675 ENCODE Processing Pipeline b758c3bbcebd2797ce496dcb0da7b9a0 https://www.encodeproject.org/files/ENCFF907XGK/@@download/ENCFF907XGK.bigWig hg19 released ENCFF042JUH bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF049MPQ, ENCFF394QUX, ENCFF402RYM, ENCFF583FAG 7111964 ENCODE Processing Pipeline 8317cb6c611f8b3f986c6c181c0cfa54 https://www.encodeproject.org/files/ENCFF042JUH/@@download/ENCFF042JUH.bed.gz hg19 released ENCFF625RTU bigBed narrowPeak conservative idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF369KDW 245660 ENCODE Processing Pipeline 12480d5742a88c302cb36358d07bb8c3 https://www.encodeproject.org/files/ENCFF625RTU/@@download/ENCFF625RTU.bigBed hg19 released ENCFF359BUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF265NSP 383759 ENCODE Processing Pipeline 5593e888dfdae2e505ef4444a1b773a4 https://www.encodeproject.org/files/ENCFF359BUQ/@@download/ENCFF359BUQ.bigBed hg19 released ENCFF795AMW bigWig fold change over control ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF049MPQ, ENCFF394QUX, ENCFF402RYM, ENCFF583FAG 2014622076 ENCODE Processing Pipeline 3928e00a2e36b809f7617649402f4b08 https://www.encodeproject.org/files/ENCFF795AMW/@@download/ENCFF795AMW.bigWig hg19 released ENCFF150RGD bigBed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF930UBG 11223492 ENCODE Processing Pipeline 1e74f21d28318700f74c59fefbbc70a8 https://www.encodeproject.org/files/ENCFF150RGD/@@download/ENCFF150RGD.bigBed hg19 released ENCFF115JWA bigBed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF056MRN 11163587 ENCODE Processing Pipeline 4665074021443febc6375b2babc60c4d https://www.encodeproject.org/files/ENCFF115JWA/@@download/ENCFF115JWA.bigBed hg19 released ENCFF369KDW bed narrowPeak conservative idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF001TDO, ENCFF042JUH, ENCFF056MRN, ENCFF930UBG 107719 ENCODE Processing Pipeline 82cf577114d57a4a88ca3cc6f381a109 https://www.encodeproject.org/files/ENCFF369KDW/@@download/ENCFF369KDW.bed.gz hg19 released ENCFF422HOR bigWig signal p-value ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF402RYM, ENCFF583FAG 918067345 ENCODE Processing Pipeline bbe159e426237b232f3c1395d013eb20 https://www.encodeproject.org/files/ENCFF422HOR/@@download/ENCFF422HOR.bigWig hg19 released ENCFF815MXQ bigWig signal p-value ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF049MPQ, ENCFF394QUX, ENCFF402RYM, ENCFF583FAG 1745035592 ENCODE Processing Pipeline 19bade7943af9c6791d4f3e3457f37db https://www.encodeproject.org/files/ENCFF815MXQ/@@download/ENCFF815MXQ.bigWig hg19 released ENCFF119GDB bigWig fold change over control ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF402RYM, ENCFF583FAG 1009974275 ENCODE Processing Pipeline 055d2a89ebf75c90f54601031c1a8ded https://www.encodeproject.org/files/ENCFF119GDB/@@download/ENCFF119GDB.bigWig hg19 released ENCFF669WMO bigWig fold change over control ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF049MPQ, ENCFF394QUX 1114299818 ENCODE Processing Pipeline c722e48f1a69f075e93ae3314e36eedf https://www.encodeproject.org/files/ENCFF669WMO/@@download/ENCFF669WMO.bigWig hg19 released ENCFF930UBG bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF402RYM, ENCFF583FAG 6001261 ENCODE Processing Pipeline bd2667b9b5997fa88abd3c21695a8128 https://www.encodeproject.org/files/ENCFF930UBG/@@download/ENCFF930UBG.bed.gz hg19 released ENCFF056MRN bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF049MPQ, ENCFF394QUX 6177313 ENCODE Processing Pipeline b6d7d75ce5807193eb368c2c9f2fc195 https://www.encodeproject.org/files/ENCFF056MRN/@@download/ENCFF056MRN.bed.gz hg19 released ENCFF289SHR bigBed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF042JUH 13241336 ENCODE Processing Pipeline 2463bc41043ce64c39c0d5de957e6815 https://www.encodeproject.org/files/ENCFF289SHR/@@download/ENCFF289SHR.bigBed hg19 released ENCFF265NSP bed narrowPeak optimal idr thresholded peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF001TDO, ENCFF042JUH, ENCFF056MRN, ENCFF930UBG 199333 ENCODE Processing Pipeline 3504216ffa027cded0fa19b18135462b https://www.encodeproject.org/files/ENCFF265NSP/@@download/ENCFF265NSP.bed.gz hg19 released ENCFF953TUT bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF807MUK 4542655100 ENCODE Processing Pipeline c8831742b56cc496c75444c4c90f0d21 https://www.encodeproject.org/files/ENCFF953TUT/@@download/ENCFF953TUT.bam hg19 released low read depth ENCFF955CZU bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF807MUK 3601288219 ENCODE Processing Pipeline 6e0bcbbd79793987f7366739f296d65d https://www.encodeproject.org/files/ENCFF955CZU/@@download/ENCFF955CZU.bam hg19 released low read depth ENCFF050IAW fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF243YFW 1609046183 Michael Snyder, Stanford f94a6d17083b79a91a69c244fc25eb17 SRA:SRR5112142 https://www.encodeproject.org/files/ENCFF050IAW/@@download/ENCFF050IAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released low read depth ENCFF243YFW fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF050IAW 1658382673 Michael Snyder, Stanford ef426a340e8493bbb96539726b398715 SRA:SRR5112142 https://www.encodeproject.org/files/ENCFF243YFW/@@download/ENCFF243YFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released low read depth ENCFF177PDI fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF061MAR 2060725748 Michael Snyder, Stanford af86ad9b68ac94849707a8b881faf559 SRA:SRR5112143 https://www.encodeproject.org/files/ENCFF177PDI/@@download/ENCFF177PDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released low read depth ENCFF061MAR fastq reads ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF177PDI 2127193089 Michael Snyder, Stanford 69b02e62a19deb6c15ce53396dc2ea31 SRA:SRR5112143 https://www.encodeproject.org/files/ENCFF061MAR/@@download/ENCFF061MAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released low read depth ENCFF866PMJ bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF807MUK 3680830088 ENCODE Processing Pipeline 6c577faa9d34df7a78d4d84cf259e426 https://www.encodeproject.org/files/ENCFF866PMJ/@@download/ENCFF866PMJ.bam hg19 released low read depth ENCFF192BTS bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF807MUK 2960123171 ENCODE Processing Pipeline c4d8feebefafc207d4c023b6702fb659 https://www.encodeproject.org/files/ENCFF192BTS/@@download/ENCFF192BTS.bam hg19 released low read depth ENCFF423OWJ bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 1086226608 ENCODE Processing Pipeline c6435352cc95d9335ae0d83dbecb7462 https://www.encodeproject.org/files/ENCFF423OWJ/@@download/ENCFF423OWJ.bigWig hg19 released low read depth ENCFF905FVX bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 1093862927 ENCODE Processing Pipeline 3dd503e1ada54b4e18dbc305df34e530 https://www.encodeproject.org/files/ENCFF905FVX/@@download/ENCFF905FVX.bigWig hg19 released low read depth ENCFF922DYL bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192BTS, ENCFF287SKW, ENCFF866PMJ, ENCFF941TZZ 1600403980 ENCODE Processing Pipeline 16e22b375ba1327b7066b96c09390302 https://www.encodeproject.org/files/ENCFF922DYL/@@download/ENCFF922DYL.bigWig hg19 released low read depth ENCFF885AVM bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 962297444 ENCODE Processing Pipeline 1410bbd660277dc56ab225571af8fdc0 https://www.encodeproject.org/files/ENCFF885AVM/@@download/ENCFF885AVM.bigWig hg19 released low read depth ENCFF024PBR bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 1032534189 ENCODE Processing Pipeline 43ce63b2eb6b0bd5956e54ed2844460c https://www.encodeproject.org/files/ENCFF024PBR/@@download/ENCFF024PBR.bigWig hg19 released low read depth ENCFF896KWL bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192BTS, ENCFF287SKW, ENCFF866PMJ, ENCFF941TZZ 1957541686 ENCODE Processing Pipeline 3fd970811904381b17b471e5da0d8d3c https://www.encodeproject.org/files/ENCFF896KWL/@@download/ENCFF896KWL.bigWig hg19 released low read depth ENCFF543JOD bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 6550363 ENCODE Processing Pipeline 2e1060a6c0a284bd9c73fd3c8370dd29 https://www.encodeproject.org/files/ENCFF543JOD/@@download/ENCFF543JOD.bed.gz hg19 released low read depth ENCFF568AYW bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 6752047 ENCODE Processing Pipeline 6785dfddf0a1eaa0d930cc2f2123e62e https://www.encodeproject.org/files/ENCFF568AYW/@@download/ENCFF568AYW.bed.gz hg19 released low read depth ENCFF350OGU bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192BTS, ENCFF287SKW, ENCFF866PMJ, ENCFF941TZZ 7170799 ENCODE Processing Pipeline 0dc6bf569cf788a92dd40a8b9bbe95ee https://www.encodeproject.org/files/ENCFF350OGU/@@download/ENCFF350OGU.bed.gz hg19 released low read depth ENCFF668GNF bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF543JOD 13322951 ENCODE Processing Pipeline bfd87d67e9496cd7ea8d1d57a8473109 https://www.encodeproject.org/files/ENCFF668GNF/@@download/ENCFF668GNF.bigBed hg19 released low read depth ENCFF742DCO bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF350OGU 13303416 ENCODE Processing Pipeline 33100375f7d11e5df91b2e4f323135fb https://www.encodeproject.org/files/ENCFF742DCO/@@download/ENCFF742DCO.bigBed hg19 released low read depth ENCFF686VWA bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF568AYW 13390695 ENCODE Processing Pipeline 296599bcfcac6842b9dfc69d200da768 https://www.encodeproject.org/files/ENCFF686VWA/@@download/ENCFF686VWA.bigBed hg19 released low read depth ENCFF465CEB bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF643CGH 3685289463 ENCODE Processing Pipeline a17b97c68a535b2e2d71a0e7a05b3efa https://www.encodeproject.org/files/ENCFF465CEB/@@download/ENCFF465CEB.bam GRCh38 released low read depth ENCFF861ZPY bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF643CGH 3602552145 ENCODE Processing Pipeline 89bbad9017798342b1c557b4b4993686 https://www.encodeproject.org/files/ENCFF861ZPY/@@download/ENCFF861ZPY.bam GRCh38 released low read depth ENCFF692TYF bam unfiltered alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF643CGH 4543698354 ENCODE Processing Pipeline ce5e80bae381ccb4b0937aff4ba87c74 https://www.encodeproject.org/files/ENCFF692TYF/@@download/ENCFF692TYF.bam GRCh38 released low read depth ENCFF366RSX bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF643CGH 2964004465 ENCODE Processing Pipeline 5d8201c1a5050532f85f6eb918ddbe06 https://www.encodeproject.org/files/ENCFF366RSX/@@download/ENCFF366RSX.bam GRCh38 released low read depth ENCFF559KGT bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF366RSX, ENCFF879YMO 1020847061 ENCODE Processing Pipeline 55ad27f258dd0e668e31029b758d018a https://www.encodeproject.org/files/ENCFF559KGT/@@download/ENCFF559KGT.bigWig GRCh38 released low read depth ENCFF482YAX bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF465CEB, ENCFF574BGV 1041914230 ENCODE Processing Pipeline d1e0296e02ed818f6b87cea187068c41 https://www.encodeproject.org/files/ENCFF482YAX/@@download/ENCFF482YAX.bigWig GRCh38 released low read depth ENCFF349CKG bigWig signal p-value ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF366RSX, ENCFF465CEB, ENCFF574BGV, ENCFF879YMO 1938819350 ENCODE Processing Pipeline 6d7b6852f44b1f7e254087732373b043 https://www.encodeproject.org/files/ENCFF349CKG/@@download/ENCFF349CKG.bigWig GRCh38 released low read depth ENCFF753XFU bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF366RSX, ENCFF879YMO 968093732 ENCODE Processing Pipeline 039a7f29d913415d3c8e4807d7fbe727 https://www.encodeproject.org/files/ENCFF753XFU/@@download/ENCFF753XFU.bigWig GRCh38 released low read depth ENCFF560LRN bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF465CEB, ENCFF574BGV 1019704653 ENCODE Processing Pipeline d9eb2b0ab5bfbd53d30aa17b90ef31b6 https://www.encodeproject.org/files/ENCFF560LRN/@@download/ENCFF560LRN.bigWig GRCh38 released low read depth ENCFF547HHK bigWig fold change over control ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF366RSX, ENCFF465CEB, ENCFF574BGV, ENCFF879YMO 1965239414 ENCODE Processing Pipeline a85c89e473195520e16b7451fce92c19 https://www.encodeproject.org/files/ENCFF547HHK/@@download/ENCFF547HHK.bigWig GRCh38 released low read depth ENCFF192KIS bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF366RSX, ENCFF879YMO 6419910 ENCODE Processing Pipeline a28dafea382ebe13c819f17424d2c55f https://www.encodeproject.org/files/ENCFF192KIS/@@download/ENCFF192KIS.bed.gz GRCh38 released low read depth ENCFF836QRB bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF366RSX, ENCFF465CEB, ENCFF574BGV, ENCFF879YMO 7190092 ENCODE Processing Pipeline 1ac867edf409b9721b741fcb97acb3b7 https://www.encodeproject.org/files/ENCFF836QRB/@@download/ENCFF836QRB.bed.gz GRCh38 released low read depth ENCFF707MEQ bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF465CEB, ENCFF574BGV 6575281 ENCODE Processing Pipeline ee9247b340bfe5f9505feb848dc83284 https://www.encodeproject.org/files/ENCFF707MEQ/@@download/ENCFF707MEQ.bed.gz GRCh38 released low read depth ENCFF227LFS bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192KIS 13303128 ENCODE Processing Pipeline 8584047e084ce0a46856613b99c1856c https://www.encodeproject.org/files/ENCFF227LFS/@@download/ENCFF227LFS.bigBed GRCh38 released low read depth ENCFF872GRS bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF707MEQ 13328592 ENCODE Processing Pipeline 43a44c867e4099badffb643ecaf84ee6 https://www.encodeproject.org/files/ENCFF872GRS/@@download/ENCFF872GRS.bigBed GRCh38 released low read depth ENCFF548HXK bed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192KIS, ENCFF419RSJ, ENCFF707MEQ, ENCFF836QRB 627440 ENCODE Processing Pipeline acb9d256f2fb68d1f20a42c771ded808 https://www.encodeproject.org/files/ENCFF548HXK/@@download/ENCFF548HXK.bed.gz GRCh38 released low read depth ENCFF639DQA bigBed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF836QRB 13356205 ENCODE Processing Pipeline e3971d68db8b47a4a25b644dd6379ab3 https://www.encodeproject.org/files/ENCFF639DQA/@@download/ENCFF639DQA.bigBed GRCh38 released low read depth ENCFF984XXL bigBed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF548HXK 1279705 ENCODE Processing Pipeline 9fd62694778a749b248b8b36b5c3b18d https://www.encodeproject.org/files/ENCFF984XXL/@@download/ENCFF984XXL.bigBed GRCh38 released low read depth ENCFF552WAH bed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF192KIS, ENCFF419RSJ, ENCFF707MEQ, ENCFF836QRB 704964 ENCODE Processing Pipeline 425bf298192d1c79a7554b17c1232b31 https://www.encodeproject.org/files/ENCFF552WAH/@@download/ENCFF552WAH.bed.gz GRCh38 released low read depth ENCFF421BTP bigBed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF552WAH 1405973 ENCODE Processing Pipeline 1d76e6a04bbbb48ce8b9ea9632b01667 https://www.encodeproject.org/files/ENCFF421BTP/@@download/ENCFF421BTP.bigBed GRCh38 released low read depth ENCFF426XYB bed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF350OGU, ENCFF543JOD, ENCFF568AYW 528427 ENCODE Processing Pipeline b8943d616c7785b27445565935cb13fd https://www.encodeproject.org/files/ENCFF426XYB/@@download/ENCFF426XYB.bed.gz hg19 released low read depth ENCFF030LQL bigBed narrowPeak conservative idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF426XYB 889796 ENCODE Processing Pipeline 8296c1b258cd6abe002b633328500ac1 https://www.encodeproject.org/files/ENCFF030LQL/@@download/ENCFF030LQL.bigBed hg19 released low read depth ENCFF899JBI bed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF350OGU, ENCFF543JOD, ENCFF568AYW 607627 ENCODE Processing Pipeline 9c5099c43d4fe33f42035269e73fc191 https://www.encodeproject.org/files/ENCFF899JBI/@@download/ENCFF899JBI.bed.gz hg19 released low read depth ENCFF235YRW bigBed narrowPeak optimal idr thresholded peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF899JBI 987094 ENCODE Processing Pipeline 330e76d46d3cb5de5ccdde579485666e https://www.encodeproject.org/files/ENCFF235YRW/@@download/ENCFF235YRW.bigBed hg19 released low read depth ENCFF451CMI fastq reads ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF741MGM 3470598870 Michael Snyder, Stanford 477ec6409aa7ac0d5d0696a1e1223841 https://www.encodeproject.org/files/ENCFF451CMI/@@download/ENCFF451CMI.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF699QBM fastq reads ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF071VWF 3095170305 Michael Snyder, Stanford e6e3bf377f365fe0bb643463b366e5e9 https://www.encodeproject.org/files/ENCFF699QBM/@@download/ENCFF699QBM.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF741MGM fastq reads ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF451CMI 3021497010 Michael Snyder, Stanford d9382dde2100a7be76581afe0d858e5f https://www.encodeproject.org/files/ENCFF741MGM/@@download/ENCFF741MGM.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF071VWF fastq reads ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF699QBM 3202733229 Michael Snyder, Stanford 751257d8594cdde375503739de9b99e0 https://www.encodeproject.org/files/ENCFF071VWF/@@download/ENCFF071VWF.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF088NWZ bam unfiltered alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF071VWF, ENCFF699QBM, ENCFF807MUK 6291693577 ENCODE Processing Pipeline 013fd44c550d437374d6f828717b33b3 https://www.encodeproject.org/files/ENCFF088NWZ/@@download/ENCFF088NWZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF028TNR bam unfiltered alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451CMI, ENCFF643CGH, ENCFF741MGM 6088348499 ENCODE Processing Pipeline b628fa9e1e63860239af2d1667cf3954 https://www.encodeproject.org/files/ENCFF028TNR/@@download/ENCFF028TNR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF403LMY bam unfiltered alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF071VWF, ENCFF643CGH, ENCFF699QBM 6308739145 ENCODE Processing Pipeline 1d3e7217356fe9ef5a934d18e9b6323c https://www.encodeproject.org/files/ENCFF403LMY/@@download/ENCFF403LMY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF351GEW bam unfiltered alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451CMI, ENCFF741MGM, ENCFF807MUK 6086557586 ENCODE Processing Pipeline 149af592ac5987e83297125e77927527 https://www.encodeproject.org/files/ENCFF351GEW/@@download/ENCFF351GEW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF292TPV bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451CMI, ENCFF643CGH, ENCFF741MGM 3343468217 ENCODE Processing Pipeline da25328fe56e16e0450996c4d3a6ee15 https://www.encodeproject.org/files/ENCFF292TPV/@@download/ENCFF292TPV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF294LCP bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451CMI, ENCFF741MGM, ENCFF807MUK 3339303852 ENCODE Processing Pipeline a58a36de4609cc40e3ee10c7a6111ca4 https://www.encodeproject.org/files/ENCFF294LCP/@@download/ENCFF294LCP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF063MSS bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF071VWF, ENCFF699QBM, ENCFF807MUK 4854284699 ENCODE Processing Pipeline ecf2db0e6eaa92ddd0aaf043a096ae23 https://www.encodeproject.org/files/ENCFF063MSS/@@download/ENCFF063MSS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF564OQO bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF071VWF, ENCFF643CGH, ENCFF699QBM 4867229327 ENCODE Processing Pipeline 224853c8ff535258a02a8d6c2899bce7 https://www.encodeproject.org/files/ENCFF564OQO/@@download/ENCFF564OQO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF770QNO bigWig signal p-value ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF063MSS, ENCFF447KVS, ENCFF823USR 1760292227 ENCODE Processing Pipeline dd1aba02640a1b5864518f6479935c38 https://www.encodeproject.org/files/ENCFF770QNO/@@download/ENCFF770QNO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF712RZL bigWig signal p-value ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF294LCP, ENCFF447KVS, ENCFF823USR 1489767077 ENCODE Processing Pipeline 29269dd71971a76ec050d0b531c726f6 https://www.encodeproject.org/files/ENCFF712RZL/@@download/ENCFF712RZL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF479GNI bigWig signal p-value ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063MSS, ENCFF294LCP, ENCFF447KVS, ENCFF823USR 2015587808 ENCODE Processing Pipeline cef1234d109a5aafe15343aeb518236d https://www.encodeproject.org/files/ENCFF479GNI/@@download/ENCFF479GNI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF082WDH bigWig fold change over control ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF294LCP, ENCFF447KVS, ENCFF823USR 1502320064 ENCODE Processing Pipeline 2ec446b613537f29af0542bce3f5677c https://www.encodeproject.org/files/ENCFF082WDH/@@download/ENCFF082WDH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF100RNB bigWig fold change over control ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF063MSS, ENCFF447KVS, ENCFF823USR 1832044756 ENCODE Processing Pipeline 7c87839e6e7c482a5b8db7a77f4155e9 https://www.encodeproject.org/files/ENCFF100RNB/@@download/ENCFF100RNB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF895YME bigWig fold change over control ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063MSS, ENCFF294LCP, ENCFF447KVS, ENCFF823USR 2197854407 ENCODE Processing Pipeline fe678a65724b4624b83de8913ea66b5e https://www.encodeproject.org/files/ENCFF895YME/@@download/ENCFF895YME.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF700KCM bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF294LCP, ENCFF447KVS, ENCFF823USR 6929481 ENCODE Processing Pipeline f925e1ec5e1d90497301cf889852287c https://www.encodeproject.org/files/ENCFF700KCM/@@download/ENCFF700KCM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF646NKR bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF063MSS, ENCFF294LCP, ENCFF447KVS, ENCFF823USR 7167926 ENCODE Processing Pipeline 3dc780787793a07c777199832d64fa15 https://www.encodeproject.org/files/ENCFF646NKR/@@download/ENCFF646NKR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF304PKL bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF063MSS, ENCFF447KVS, ENCFF823USR 6656620 ENCODE Processing Pipeline 333e1aa02bad4845338ec65b685f4f08 https://www.encodeproject.org/files/ENCFF304PKL/@@download/ENCFF304PKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF487MCK bigBed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF700KCM 13410334 ENCODE Processing Pipeline c362f4ecfeb7e566b556c4900f1138b0 https://www.encodeproject.org/files/ENCFF487MCK/@@download/ENCFF487MCK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF927JIW bigBed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF304PKL 11442542 ENCODE Processing Pipeline 669a81f5d4527eade33f3c77574f5611 https://www.encodeproject.org/files/ENCFF927JIW/@@download/ENCFF927JIW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF606JHO bigBed narrowPeak conservative idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF592GPF 358007 ENCODE Processing Pipeline 2f91abef7861c00e24eb219da33a0f0b https://www.encodeproject.org/files/ENCFF606JHO/@@download/ENCFF606JHO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF656KNO bigBed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF646NKR 13281833 ENCODE Processing Pipeline 6d07ee5c0f4e97e1249a0a1facca5595 https://www.encodeproject.org/files/ENCFF656KNO/@@download/ENCFF656KNO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF592GPF bed narrowPeak conservative idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF304PKL, ENCFF646NKR, ENCFF700KCM 137807 ENCODE Processing Pipeline b1676bceab5a9ad5b143bc81aa5b93b8 https://www.encodeproject.org/files/ENCFF592GPF/@@download/ENCFF592GPF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF359WMP bed narrowPeak optimal idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF304PKL, ENCFF646NKR, ENCFF700KCM 261287 ENCODE Processing Pipeline 7a9845a569983a1b9ca6a496e7ca7bca https://www.encodeproject.org/files/ENCFF359WMP/@@download/ENCFF359WMP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF207ONE bigBed narrowPeak optimal idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF359WMP 571831 ENCODE Processing Pipeline 344c9dc31a3b34bed33ac35c3272d395 https://www.encodeproject.org/files/ENCFF207ONE/@@download/ENCFF207ONE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF583XKI bigWig signal p-value ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF292TPV, ENCFF746SKT 1545859894 ENCODE Processing Pipeline d1e43e5dd7d207ac38e4f1d4e2589fa8 https://www.encodeproject.org/files/ENCFF583XKI/@@download/ENCFF583XKI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF942UOJ bigWig signal p-value ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF564OQO, ENCFF746SKT 1452826894 ENCODE Processing Pipeline c447ca735445c7b4ce1f4f07cd454c0f https://www.encodeproject.org/files/ENCFF942UOJ/@@download/ENCFF942UOJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF384TBC bigWig signal p-value ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF292TPV, ENCFF564OQO, ENCFF746SKT 2116108704 ENCODE Processing Pipeline 582403b5b4c25c57b654aa3b4faf3a1a https://www.encodeproject.org/files/ENCFF384TBC/@@download/ENCFF384TBC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF755FLG bigWig fold change over control ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF292TPV, ENCFF746SKT 1475568387 ENCODE Processing Pipeline d3579a094a3ea2ce6bdcd2f533c0c516 https://www.encodeproject.org/files/ENCFF755FLG/@@download/ENCFF755FLG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF975ZIU bigWig fold change over control ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF564OQO, ENCFF746SKT 1819138224 ENCODE Processing Pipeline 8725b88efe0923619a5fb89989b58d1c https://www.encodeproject.org/files/ENCFF975ZIU/@@download/ENCFF975ZIU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF082RWR bigWig fold change over control ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF292TPV, ENCFF564OQO, ENCFF746SKT 2227810966 ENCODE Processing Pipeline 080e4bbc8b369d441b00feb3614f7fb4 https://www.encodeproject.org/files/ENCFF082RWR/@@download/ENCFF082RWR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF492NVG bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF292TPV, ENCFF746SKT 6833818 ENCODE Processing Pipeline f38b734b64c1fc15ca1e935d55f63fc7 https://www.encodeproject.org/files/ENCFF492NVG/@@download/ENCFF492NVG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF852HVU bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF292TPV, ENCFF564OQO, ENCFF746SKT 7161263 ENCODE Processing Pipeline d00926e307ffe6f7c0a0d086b9f83148 https://www.encodeproject.org/files/ENCFF852HVU/@@download/ENCFF852HVU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF979PYB bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF564OQO, ENCFF746SKT 6536682 ENCODE Processing Pipeline 1b9f8125f34c0f43fe583c4d69b0107a https://www.encodeproject.org/files/ENCFF979PYB/@@download/ENCFF979PYB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF660ERX bigBed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF852HVU 13292942 ENCODE Processing Pipeline 4085d564bd7bea06991d71bc78567132 https://www.encodeproject.org/files/ENCFF660ERX/@@download/ENCFF660ERX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF320UFG bigBed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF979PYB 11462715 ENCODE Processing Pipeline 17098fae77b0a4953e7c3d535cad6d6c https://www.encodeproject.org/files/ENCFF320UFG/@@download/ENCFF320UFG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF430PHS bigBed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF492NVG 13414357 ENCODE Processing Pipeline 89519ac95cad851ad6a4f1b722818c40 https://www.encodeproject.org/files/ENCFF430PHS/@@download/ENCFF430PHS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF814ZPW bed narrowPeak conservative idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF492NVG, ENCFF852HVU, ENCFF979PYB 141467 ENCODE Processing Pipeline 9e6e1d89f256cf589766bc6d6e7547bb https://www.encodeproject.org/files/ENCFF814ZPW/@@download/ENCFF814ZPW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF033TGZ bigBed narrowPeak conservative idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF814ZPW 363877 ENCODE Processing Pipeline 73d2247068a92d9d37991f9042d3a656 https://www.encodeproject.org/files/ENCFF033TGZ/@@download/ENCFF033TGZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF025SMR bed narrowPeak optimal idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF492NVG, ENCFF852HVU, ENCFF979PYB 265568 ENCODE Processing Pipeline 452a23a1ce260dc50f0545d99f20eba5 https://www.encodeproject.org/files/ENCFF025SMR/@@download/ENCFF025SMR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF072QRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF025SMR 682602 ENCODE Processing Pipeline 1112aa1fa1ae97155c3bcb790c2580ba https://www.encodeproject.org/files/ENCFF072QRZ/@@download/ENCFF072QRZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF397BDM bam unfiltered alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF346WZR, ENCFF807MUK, ENCFF861PLD 1472681486 ENCODE Processing Pipeline 07f0af64745206bd29146bbf15564e1f https://www.encodeproject.org/files/ENCFF397BDM/@@download/ENCFF397BDM.bam hg19 released low read depth, missing genetic modification characterization ENCFF490JJA bam unfiltered alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF385UYP, ENCFF701VYF, ENCFF807MUK 1112342006 ENCODE Processing Pipeline ed860907d8d3c018f1a331cf967120aa https://www.encodeproject.org/files/ENCFF490JJA/@@download/ENCFF490JJA.bam hg19 released low read depth, missing genetic modification characterization ENCFF861PLD fastq reads ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 607958322 Kevin White, UChicago e6c6ff33627039bf1afe0ae77e8ff21d SRA:SRR6213040 https://www.encodeproject.org/files/ENCFF861PLD/@@download/ENCFF861PLD.fastq.gz Illumina HiSeq 2500 /files/ENCFF322SHV/, /files/ENCFF617CIJ/ released low read depth, missing genetic modification characterization ENCFF701VYF fastq reads ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 485662832 Kevin White, UChicago 3343921a8545fe3b5acdc21f01f665e3 SRA:SRR6213038 https://www.encodeproject.org/files/ENCFF701VYF/@@download/ENCFF701VYF.fastq.gz Illumina HiSeq 2500 /files/ENCFF322SHV/, /files/ENCFF617CIJ/ released low read depth, missing genetic modification characterization ENCFF346WZR fastq reads ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 874546037 Kevin White, UChicago 824c5d89047585c79c1d38b0571705e1 SRA:SRR6213041 https://www.encodeproject.org/files/ENCFF346WZR/@@download/ENCFF346WZR.fastq.gz Illumina HiSeq 2500 /files/ENCFF322SHV/, /files/ENCFF617CIJ/ released low read depth, missing genetic modification characterization ENCFF385UYP fastq reads ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 627424950 Kevin White, UChicago bac2d8d750d2c2d775741d3412978ae9 SRA:SRR6213039 https://www.encodeproject.org/files/ENCFF385UYP/@@download/ENCFF385UYP.fastq.gz Illumina HiSeq 2500 /files/ENCFF322SHV/, /files/ENCFF617CIJ/ released low read depth, missing genetic modification characterization ENCFF772DPI bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF385UYP, ENCFF701VYF, ENCFF807MUK 755350368 ENCODE Processing Pipeline 7e9b48ac555fccc0af1482d50d5a0874 https://www.encodeproject.org/files/ENCFF772DPI/@@download/ENCFF772DPI.bam hg19 released low read depth, missing genetic modification characterization ENCFF009ZXV bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF346WZR, ENCFF807MUK, ENCFF861PLD 999698272 ENCODE Processing Pipeline 740ef3e38feb6b765f7e2ff53ec7963a https://www.encodeproject.org/files/ENCFF009ZXV/@@download/ENCFF009ZXV.bam hg19 released low read depth, missing genetic modification characterization ENCFF040UHG bigWig signal p-value ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF629YBN, ENCFF772DPI 554505596 ENCODE Processing Pipeline 7a23bc87a612012c40772b47cfb0c84b https://www.encodeproject.org/files/ENCFF040UHG/@@download/ENCFF040UHG.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF438IMS bigWig fold change over control ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF629YBN, ENCFF772DPI 545874580 ENCODE Processing Pipeline 20e52d9b45ffd90d4eecbc77f943c8f5 https://www.encodeproject.org/files/ENCFF438IMS/@@download/ENCFF438IMS.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF919ECJ bam unfiltered alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF346WZR, ENCFF643CGH, ENCFF861PLD 1476037887 ENCODE Processing Pipeline 8aa136da1bc057d9b7397b332b0cd58b https://www.encodeproject.org/files/ENCFF919ECJ/@@download/ENCFF919ECJ.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF400MMA bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF346WZR, ENCFF643CGH, ENCFF861PLD 999006246 ENCODE Processing Pipeline 9efbc857178b845e3293df331f45d899 https://www.encodeproject.org/files/ENCFF400MMA/@@download/ENCFF400MMA.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF244TJH bam unfiltered alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF385UYP, ENCFF643CGH, ENCFF701VYF 1114832159 ENCODE Processing Pipeline d331971d8c7bff4b55a706042b9035e1 https://www.encodeproject.org/files/ENCFF244TJH/@@download/ENCFF244TJH.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF593XTM bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF385UYP, ENCFF643CGH, ENCFF701VYF 754779497 ENCODE Processing Pipeline 70e250bde64448af66e2880f386fed2e https://www.encodeproject.org/files/ENCFF593XTM/@@download/ENCFF593XTM.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF637NDE bigWig signal p-value ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF159FKZ, ENCFF400MMA 564312272 ENCODE Processing Pipeline fe9d6be82dd9234930b6da0e3a6d6bce https://www.encodeproject.org/files/ENCFF637NDE/@@download/ENCFF637NDE.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF627CZH bigWig signal p-value ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF159FKZ, ENCFF593XTM 656535376 ENCODE Processing Pipeline 6297d5c71e28912e855f605a8ed0f604 https://www.encodeproject.org/files/ENCFF627CZH/@@download/ENCFF627CZH.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF370IQU bigWig signal p-value ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF159FKZ, ENCFF400MMA, ENCFF593XTM 866690764 ENCODE Processing Pipeline 3fbedbe2483e64d7d1db0a9d9438c15e https://www.encodeproject.org/files/ENCFF370IQU/@@download/ENCFF370IQU.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF776NHK bigWig fold change over control ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF159FKZ, ENCFF400MMA 642266273 ENCODE Processing Pipeline 20f77d87450043e6ac2296089b8f5505 https://www.encodeproject.org/files/ENCFF776NHK/@@download/ENCFF776NHK.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF347WTQ bigWig fold change over control ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF159FKZ, ENCFF593XTM 542813186 ENCODE Processing Pipeline 41c2c8e1e93eb32897ad1bc795c4ace8 https://www.encodeproject.org/files/ENCFF347WTQ/@@download/ENCFF347WTQ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF477SSU bigWig fold change over control ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF159FKZ, ENCFF400MMA, ENCFF593XTM 869528038 ENCODE Processing Pipeline 5aaef4ea7d2559bd971d8019c45bb859 https://www.encodeproject.org/files/ENCFF477SSU/@@download/ENCFF477SSU.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF027OOJ bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF159FKZ, ENCFF593XTM 6499408 ENCODE Processing Pipeline 6653b30f24293a674c28242dc5bc4615 https://www.encodeproject.org/files/ENCFF027OOJ/@@download/ENCFF027OOJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF119GNW bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF159FKZ, ENCFF400MMA 6767109 ENCODE Processing Pipeline 49b75d9293f30a57900c15a39b0da469 https://www.encodeproject.org/files/ENCFF119GNW/@@download/ENCFF119GNW.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF326DWK bigBed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF119GNW 12755670 ENCODE Processing Pipeline 74a9312e4af6e378087b2ed150fe3a33 https://www.encodeproject.org/files/ENCFF326DWK/@@download/ENCFF326DWK.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF806LNP bigBed narrowPeak conservative idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF492VKT 1263234 ENCODE Processing Pipeline c13edc2d359e816c7c91d95d9c9695e9 https://www.encodeproject.org/files/ENCFF806LNP/@@download/ENCFF806LNP.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF535BMV bed narrowPeak optimal idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF027OOJ, ENCFF119GNW, ENCFF419RSJ, ENCFF832TTO 590995 ENCODE Processing Pipeline 262c811193da09ef8b05fb6bf75cc9be https://www.encodeproject.org/files/ENCFF535BMV/@@download/ENCFF535BMV.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF832TTO bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF159FKZ, ENCFF400MMA, ENCFF593XTM 7041671 ENCODE Processing Pipeline 435a35a6cd32a8509331fab075986a9f https://www.encodeproject.org/files/ENCFF832TTO/@@download/ENCFF832TTO.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF492VKT bed narrowPeak conservative idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF027OOJ, ENCFF119GNW, ENCFF419RSJ, ENCFF832TTO 587036 ENCODE Processing Pipeline db2eabb0435fc97dd4ebadab29267c27 https://www.encodeproject.org/files/ENCFF492VKT/@@download/ENCFF492VKT.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF679AGT bigBed narrowPeak optimal idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF535BMV 1268433 ENCODE Processing Pipeline 336d1b8d8077a84d866636d98fe529ad https://www.encodeproject.org/files/ENCFF679AGT/@@download/ENCFF679AGT.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF722PQU bigBed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF832TTO 12721103 ENCODE Processing Pipeline e964f10e139ba14d543f90740efbaffd https://www.encodeproject.org/files/ENCFF722PQU/@@download/ENCFF722PQU.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF745GCH bigBed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF027OOJ 12829570 ENCODE Processing Pipeline 51e5d7fb28b2d908d8f6d6acafb69f59 https://www.encodeproject.org/files/ENCFF745GCH/@@download/ENCFF745GCH.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF319VGK bigWig signal p-value ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF009ZXV, ENCFF629YBN 581216734 ENCODE Processing Pipeline 8426e9fbed7737a585aef3bb0f734cbd https://www.encodeproject.org/files/ENCFF319VGK/@@download/ENCFF319VGK.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF450AAJ bigWig signal p-value ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009ZXV, ENCFF629YBN, ENCFF772DPI 865167215 ENCODE Processing Pipeline 182c8e16fd91ee767338b2e5e593dd7d https://www.encodeproject.org/files/ENCFF450AAJ/@@download/ENCFF450AAJ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF244CNG bigWig fold change over control ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF009ZXV, ENCFF629YBN 653708602 ENCODE Processing Pipeline 1eea8a7ce1ef035d34006ad21da24ab8 https://www.encodeproject.org/files/ENCFF244CNG/@@download/ENCFF244CNG.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF685KAG bed narrowPeak optimal idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF026SKI, ENCFF835LBQ, ENCFF845TET 590608 ENCODE Processing Pipeline 2642e3d21c71e17716b79b0496bbf05b https://www.encodeproject.org/files/ENCFF685KAG/@@download/ENCFF685KAG.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF845TET bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF009ZXV, ENCFF629YBN 6765258 ENCODE Processing Pipeline e7f259ed3066ecddb659b324d47541a4 https://www.encodeproject.org/files/ENCFF845TET/@@download/ENCFF845TET.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF026SKI bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF629YBN, ENCFF772DPI 6500124 ENCODE Processing Pipeline e9deff36e8ad4de02867558a33ef1222 https://www.encodeproject.org/files/ENCFF026SKI/@@download/ENCFF026SKI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF835LBQ bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009ZXV, ENCFF629YBN, ENCFF772DPI 7040983 ENCODE Processing Pipeline 0660ffc5d585df2a9dae9ae59d22e30d https://www.encodeproject.org/files/ENCFF835LBQ/@@download/ENCFF835LBQ.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF483HNX bigBed narrowPeak conservative idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF427YBA 1260122 ENCODE Processing Pipeline b5a6014065c6de844ac2da75f805b82a https://www.encodeproject.org/files/ENCFF483HNX/@@download/ENCFF483HNX.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF251JYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF685KAG 1266213 ENCODE Processing Pipeline e204feca910aa1852a2219742ad0c81d https://www.encodeproject.org/files/ENCFF251JYQ/@@download/ENCFF251JYQ.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF915JOK bigWig fold change over control ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009ZXV, ENCFF629YBN, ENCFF772DPI 866621093 ENCODE Processing Pipeline e757c0d8df5b0f8656f79ae40845d20f https://www.encodeproject.org/files/ENCFF915JOK/@@download/ENCFF915JOK.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF575SLA bigBed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF845TET 12749304 ENCODE Processing Pipeline b7c866035583c189d17f5827a51a8408 https://www.encodeproject.org/files/ENCFF575SLA/@@download/ENCFF575SLA.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF868QMY bigBed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF026SKI 12823981 ENCODE Processing Pipeline 61a48fecd445f3f567de14772c2c4eed https://www.encodeproject.org/files/ENCFF868QMY/@@download/ENCFF868QMY.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF427YBA bed narrowPeak conservative idr thresholded peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF026SKI, ENCFF835LBQ, ENCFF845TET 586872 ENCODE Processing Pipeline c7604f39f8cc2afd5107ead2064eeb57 https://www.encodeproject.org/files/ENCFF427YBA/@@download/ENCFF427YBA.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF878BRL bigBed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF835LBQ 12714417 ENCODE Processing Pipeline 1494186b5b7da2a1227db503fb188fae https://www.encodeproject.org/files/ENCFF878BRL/@@download/ENCFF878BRL.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF660YKV bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF210NKW, ENCFF667ECB, ENCFF851QFR, ENCFF922JGL 6175719 ENCODE Processing Pipeline 45bc589ef1be9957050ffa111c204906 https://www.encodeproject.org/files/ENCFF660YKV/@@download/ENCFF660YKV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF548IPK bigBed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF855KUE 7948582 ENCODE Processing Pipeline 0b511a4e5ef613978953c2ec7fae5c78 https://www.encodeproject.org/files/ENCFF548IPK/@@download/ENCFF548IPK.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF971ZKH bigBed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF660YKV 13079944 ENCODE Processing Pipeline b6a6addfbdc61585c221cd6db2e05a38 https://www.encodeproject.org/files/ENCFF971ZKH/@@download/ENCFF971ZKH.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF018DPB bigBed narrowPeak conservative idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF904ZZF 116723 ENCODE Processing Pipeline 6ae94e427d6b3134d60b2506ec4c618c https://www.encodeproject.org/files/ENCFF018DPB/@@download/ENCFF018DPB.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF826RQT bigWig signal p-value ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF667ECB, ENCFF922JGL 410174708 ENCODE Processing Pipeline e11739a76157a0945df6445034d76a13 https://www.encodeproject.org/files/ENCFF826RQT/@@download/ENCFF826RQT.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF872AKB bigWig signal p-value ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF210NKW, ENCFF667ECB, ENCFF851QFR, ENCFF922JGL 839805193 ENCODE Processing Pipeline 2f29176ac125be000161d2cfd2f782e2 https://www.encodeproject.org/files/ENCFF872AKB/@@download/ENCFF872AKB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF890RUD bigWig fold change over control ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF210NKW, ENCFF667ECB, ENCFF851QFR, ENCFF922JGL 497073134 ENCODE Processing Pipeline 1ea5fd7568612dc4577f9652aaf722f1 https://www.encodeproject.org/files/ENCFF890RUD/@@download/ENCFF890RUD.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF284GZE bigBed narrowPeak optimal idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF722XRW 126914 ENCODE Processing Pipeline 61fc54196b7a31d4db4d05679d4397fa https://www.encodeproject.org/files/ENCFF284GZE/@@download/ENCFF284GZE.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF177PXT bigWig fold change over control ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF210NKW, ENCFF851QFR 181632900 ENCODE Processing Pipeline f39db85373d5b6db6e93361eddeb6cc3 https://www.encodeproject.org/files/ENCFF177PXT/@@download/ENCFF177PXT.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF904ZZF bed narrowPeak conservative idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF351RVX, ENCFF660YKV, ENCFF855KUE 30065 ENCODE Processing Pipeline 1e4e1c1af403d4977d2f5d890b5c28cf https://www.encodeproject.org/files/ENCFF904ZZF/@@download/ENCFF904ZZF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF344GRT bigWig signal p-value ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF210NKW, ENCFF851QFR 443412387 ENCODE Processing Pipeline b57d6c9208256c3a07b43d6179e58e7c https://www.encodeproject.org/files/ENCFF344GRT/@@download/ENCFF344GRT.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF855KUE bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF667ECB, ENCFF922JGL 3697535 ENCODE Processing Pipeline a3464c93be77824ae771ff63f14e795d https://www.encodeproject.org/files/ENCFF855KUE/@@download/ENCFF855KUE.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF865TWU bigBed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF351RVX 8294038 ENCODE Processing Pipeline ea27f7c68997ac12d090642becb029cd https://www.encodeproject.org/files/ENCFF865TWU/@@download/ENCFF865TWU.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF603PIC bigWig fold change over control ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF667ECB, ENCFF922JGL 208106875 ENCODE Processing Pipeline 0e0ee5e01607b557786feb5900f6f071 https://www.encodeproject.org/files/ENCFF603PIC/@@download/ENCFF603PIC.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF351RVX bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF210NKW, ENCFF851QFR 3634415 ENCODE Processing Pipeline 955f84775d6840b7dd27b39a1daa2067 https://www.encodeproject.org/files/ENCFF351RVX/@@download/ENCFF351RVX.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF722XRW bed narrowPeak optimal idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF351RVX, ENCFF660YKV, ENCFF855KUE 35897 ENCODE Processing Pipeline 66fd79ad483e886447bda38002301cf8 https://www.encodeproject.org/files/ENCFF722XRW/@@download/ENCFF722XRW.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF177YFM bigWig signal p-value ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF102RVF, ENCFF893YRO 411933065 ENCODE Processing Pipeline 2886612f2153b5a450e3aaaea5e94a95 https://www.encodeproject.org/files/ENCFF177YFM/@@download/ENCFF177YFM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF521YEW bigWig signal p-value ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF102RVF, ENCFF293OZD, ENCFF438FAN, ENCFF893YRO 822074230 ENCODE Processing Pipeline fc78dbe662d52edafd456d8dff76a7e5 https://www.encodeproject.org/files/ENCFF521YEW/@@download/ENCFF521YEW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF004VHV bigWig fold change over control ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF102RVF, ENCFF893YRO 188940722 ENCODE Processing Pipeline 0caf1ad342c16b2e0e46e217b4b4c7f1 https://www.encodeproject.org/files/ENCFF004VHV/@@download/ENCFF004VHV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF969YQG bigWig signal p-value ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF293OZD, ENCFF438FAN 409490949 ENCODE Processing Pipeline 61b1c90af3623e479351a1d628fe46da https://www.encodeproject.org/files/ENCFF969YQG/@@download/ENCFF969YQG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF926XGK bed narrowPeak optimal idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF152QHL, ENCFF419RSJ, ENCFF558CCZ, ENCFF832UQQ 33800 ENCODE Processing Pipeline bca83ec503a4afd8c43208fd2a0e7be1 https://www.encodeproject.org/files/ENCFF926XGK/@@download/ENCFF926XGK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF558CCZ bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF102RVF, ENCFF293OZD, ENCFF438FAN, ENCFF893YRO 6019056 ENCODE Processing Pipeline fbf44e57b2c5b4130fe35c78fee8a562 https://www.encodeproject.org/files/ENCFF558CCZ/@@download/ENCFF558CCZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF421JUR bigWig fold change over control ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF293OZD, ENCFF438FAN 208007835 ENCODE Processing Pipeline 16b2ab039c6346e60ce553cfeec39c40 https://www.encodeproject.org/files/ENCFF421JUR/@@download/ENCFF421JUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF832UQQ bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF293OZD, ENCFF438FAN 3644257 ENCODE Processing Pipeline b8b8218d9908aef61d0de2f132e84318 https://www.encodeproject.org/files/ENCFF832UQQ/@@download/ENCFF832UQQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF837GWA bigBed narrowPeak conservative idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF712WMH 98808 ENCODE Processing Pipeline d5b7aa5bc57089222502b280b01e23e5 https://www.encodeproject.org/files/ENCFF837GWA/@@download/ENCFF837GWA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF207HTQ bigWig fold change over control ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF102RVF, ENCFF293OZD, ENCFF438FAN, ENCFF893YRO 505642041 ENCODE Processing Pipeline 59edd9e3598afc11f2ddcd0f8007352b https://www.encodeproject.org/files/ENCFF207HTQ/@@download/ENCFF207HTQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF152QHL bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF102RVF, ENCFF893YRO 3600667 ENCODE Processing Pipeline a066724f550dcd38b99dc81aaa3f2c70 https://www.encodeproject.org/files/ENCFF152QHL/@@download/ENCFF152QHL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF663ZWD bigBed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF832UQQ 7891889 ENCODE Processing Pipeline 6a1ff250bdb59b65cb4f1b451ebe7620 https://www.encodeproject.org/files/ENCFF663ZWD/@@download/ENCFF663ZWD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF560FQR bigBed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF152QHL 8258296 ENCODE Processing Pipeline d14f238206dede705ec2473a68b689aa https://www.encodeproject.org/files/ENCFF560FQR/@@download/ENCFF560FQR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF712WMH bed narrowPeak conservative idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF152QHL, ENCFF419RSJ, ENCFF558CCZ, ENCFF832UQQ 28463 ENCODE Processing Pipeline cf9c84b672df412517240cc9c2f55489 https://www.encodeproject.org/files/ENCFF712WMH/@@download/ENCFF712WMH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF721BJA bigBed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF558CCZ 13029793 ENCODE Processing Pipeline 42dc8ef5c08504227ee2187bcc2e18d3 https://www.encodeproject.org/files/ENCFF721BJA/@@download/ENCFF721BJA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF870QGL bigBed narrowPeak optimal idr thresholded peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF926XGK 106464 ENCODE Processing Pipeline ea880350876190f116cb93c843dea9f2 https://www.encodeproject.org/files/ENCFF870QGL/@@download/ENCFF870QGL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF614XZH fastq reads ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 1 40 single-ended 376109403 Xiang-Dong Fu, UCSD 138bc17902a3fd550624c73cce53177d https://www.encodeproject.org/files/ENCFF614XZH/@@download/ENCFF614XZH.fastq.gz Illumina HiSeq 2000 /files/ENCFF113ZAT/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF137DST fastq reads ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 1 40 single-ended 295749999 Xiang-Dong Fu, UCSD b5022d77d69916f5c1361d65dbbb2781 https://www.encodeproject.org/files/ENCFF137DST/@@download/ENCFF137DST.fastq.gz Illumina HiSeq 2000 /files/ENCFF911KYO/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF210NKW bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF137DST, ENCFF807MUK 225463752 ENCODE Processing Pipeline e7b81152995e3c5ed9d33f04de6c7c0d https://www.encodeproject.org/files/ENCFF210NKW/@@download/ENCFF210NKW.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF667ECB bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF614XZH, ENCFF807MUK 245293733 ENCODE Processing Pipeline 1fd03c702ee3b4918d0c1370e40ade6f https://www.encodeproject.org/files/ENCFF667ECB/@@download/ENCFF667ECB.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF243NSS bam unfiltered alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF614XZH, ENCFF643CGH 502746466 ENCODE Processing Pipeline a3382527cc9ba47042381b13617a4599 https://www.encodeproject.org/files/ENCFF243NSS/@@download/ENCFF243NSS.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF071IDD bam unfiltered alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF137DST, ENCFF643CGH 418258576 ENCODE Processing Pipeline 63214b395cbf31d0de309463a6580180 https://www.encodeproject.org/files/ENCFF071IDD/@@download/ENCFF071IDD.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF293OZD bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF614XZH, ENCFF643CGH 244951944 ENCODE Processing Pipeline 2a451db688c5b6567f6617ce4c09f887 https://www.encodeproject.org/files/ENCFF293OZD/@@download/ENCFF293OZD.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF893YRO bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF137DST, ENCFF643CGH 225115402 ENCODE Processing Pipeline 7491002d838a962be2738c240623fd4c https://www.encodeproject.org/files/ENCFF893YRO/@@download/ENCFF893YRO.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF226YWL bam unfiltered alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF614XZH, ENCFF807MUK 501348425 ENCODE Processing Pipeline e4b1842161b9072e347a7ec0906ed99f https://www.encodeproject.org/files/ENCFF226YWL/@@download/ENCFF226YWL.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF744KPC bam unfiltered alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF137DST, ENCFF807MUK 417418416 ENCODE Processing Pipeline d74f52a46e1004eaf3470d31be8cdaff https://www.encodeproject.org/files/ENCFF744KPC/@@download/ENCFF744KPC.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF581QYR fastq reads ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 1 100 paired-ended 1 ENCFF394TOY 3442946016 Michael Snyder, Stanford e7e1d69d688b1056f5070950c9208c69 https://www.encodeproject.org/files/ENCFF581QYR/@@download/ENCFF581QYR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF910QTP fastq reads ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 1 100 paired-ended 2 ENCFF895UGJ 4677570485 Michael Snyder, Stanford b437b38270e8445861f69fdce6e09803 SRA:SRR5111791 https://www.encodeproject.org/files/ENCFF910QTP/@@download/ENCFF910QTP.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF895UGJ fastq reads ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 1 100 paired-ended 1 ENCFF910QTP 4477868984 Michael Snyder, Stanford aae2d184568c6a1cf6be4c6f73a8115c SRA:SRR5111791 https://www.encodeproject.org/files/ENCFF895UGJ/@@download/ENCFF895UGJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF394TOY fastq reads ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 1 100 paired-ended 2 ENCFF581QYR 3494408102 Michael Snyder, Stanford 2deacd25063d079da4bbc582c646be1d https://www.encodeproject.org/files/ENCFF394TOY/@@download/ENCFF394TOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF677ULQ fastq reads ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 1 100 paired-ended 1 ENCFF410PAM 5658627582 Michael Snyder, Stanford d93b4eb38fd6f2e033599d05a21bb136 SRA:SRR5111790 https://www.encodeproject.org/files/ENCFF677ULQ/@@download/ENCFF677ULQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF410PAM fastq reads ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 1 100 paired-ended 2 ENCFF677ULQ 6586408434 Michael Snyder, Stanford 97ead85b5085e12deefcc4267b53431d SRA:SRR5111790 https://www.encodeproject.org/files/ENCFF410PAM/@@download/ENCFF410PAM.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF789EWD bam unfiltered alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 100 ENCFF643CGH, ENCFF895UGJ, ENCFF910QTP 7876837255 ENCODE Processing Pipeline 68debf1aed48140db5b5f6c2193492d9 https://www.encodeproject.org/files/ENCFF789EWD/@@download/ENCFF789EWD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF550JCP bam unfiltered alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 100 ENCFF410PAM, ENCFF643CGH, ENCFF677ULQ 10797737772 ENCODE Processing Pipeline c14c0dde18124331d12b43f9c6623d72 https://www.encodeproject.org/files/ENCFF550JCP/@@download/ENCFF550JCP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF785NOU bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 100 ENCFF643CGH, ENCFF895UGJ, ENCFF910QTP 3988920627 ENCODE Processing Pipeline 09592de377cac341487c4d9d0ec68231 https://www.encodeproject.org/files/ENCFF785NOU/@@download/ENCFF785NOU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF135YTU bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 100 ENCFF410PAM, ENCFF643CGH, ENCFF677ULQ 6679698814 ENCODE Processing Pipeline c75a4371aa088bce1187bc288545e1dd https://www.encodeproject.org/files/ENCFF135YTU/@@download/ENCFF135YTU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF052ZSK bigWig signal p-value ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF785NOU, ENCFF790TAN 1103784465 ENCODE Processing Pipeline de16c242f346a0c8f9dd0b1e1f733b3c https://www.encodeproject.org/files/ENCFF052ZSK/@@download/ENCFF052ZSK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF961HVH bigWig signal p-value ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF135YTU, ENCFF712WXB, ENCFF790TAN 2140877219 ENCODE Processing Pipeline 10fc0c53eaca1bba12aa677cb80a37a0 https://www.encodeproject.org/files/ENCFF961HVH/@@download/ENCFF961HVH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF783LXR bigWig signal p-value ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF135YTU, ENCFF712WXB, ENCFF785NOU, ENCFF790TAN 2466208577 ENCODE Processing Pipeline c9c3fdec2aafd6e680e3cbba01388c0c https://www.encodeproject.org/files/ENCFF783LXR/@@download/ENCFF783LXR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF098AKJ bigWig fold change over control ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF785NOU, ENCFF790TAN 1410582993 ENCODE Processing Pipeline 65c21e2070c788dc43dd645c2f14d9e2 https://www.encodeproject.org/files/ENCFF098AKJ/@@download/ENCFF098AKJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF715DWW bigWig fold change over control ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF135YTU, ENCFF712WXB, ENCFF790TAN 2259496550 ENCODE Processing Pipeline 71e260925d9ea3e452664879c46a1672 https://www.encodeproject.org/files/ENCFF715DWW/@@download/ENCFF715DWW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF741BVS bigWig fold change over control ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF135YTU, ENCFF712WXB, ENCFF785NOU, ENCFF790TAN 2703589883 ENCODE Processing Pipeline 31608e244f38ecb0b46565f6acb30bfe https://www.encodeproject.org/files/ENCFF741BVS/@@download/ENCFF741BVS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF032INA bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF785NOU, ENCFF790TAN 6423005 ENCODE Processing Pipeline 3be5b6a9b5c3953f496271f2c3ac9e49 https://www.encodeproject.org/files/ENCFF032INA/@@download/ENCFF032INA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF596JMC bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF135YTU, ENCFF712WXB, ENCFF790TAN 7084324 ENCODE Processing Pipeline 0f978650c7475d3f4c6c470f4f1773dd https://www.encodeproject.org/files/ENCFF596JMC/@@download/ENCFF596JMC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF600LZM bigBed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF332REP 13337235 ENCODE Processing Pipeline 1b4b4b83f5bac75612db0d51fdcda35c https://www.encodeproject.org/files/ENCFF600LZM/@@download/ENCFF600LZM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF661VOO bed narrowPeak optimal idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF032INA, ENCFF332REP, ENCFF419RSJ, ENCFF596JMC 76135 ENCODE Processing Pipeline 61e24bc3f8f4c822d14ccef71fd89050 https://www.encodeproject.org/files/ENCFF661VOO/@@download/ENCFF661VOO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF332REP bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF135YTU, ENCFF712WXB, ENCFF785NOU, ENCFF790TAN 7354774 ENCODE Processing Pipeline 55cb93dbcf3e06a750c032be09dcb72a https://www.encodeproject.org/files/ENCFF332REP/@@download/ENCFF332REP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF977QAV bigBed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF032INA 11071304 ENCODE Processing Pipeline 432b2f2ce5502926ed8524e09fd930c6 https://www.encodeproject.org/files/ENCFF977QAV/@@download/ENCFF977QAV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF878AST bigBed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF596JMC 11283346 ENCODE Processing Pipeline f80b12791b4862ac7e65204454dca973 https://www.encodeproject.org/files/ENCFF878AST/@@download/ENCFF878AST.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF237ZFZ bed narrowPeak conservative idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF032INA, ENCFF332REP, ENCFF419RSJ, ENCFF596JMC 38592 ENCODE Processing Pipeline 01ab19ed6bbfddf189ed76a639aa30d0 https://www.encodeproject.org/files/ENCFF237ZFZ/@@download/ENCFF237ZFZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF970LAU bigBed narrowPeak conservative idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF237ZFZ 136163 ENCODE Processing Pipeline 4cf2973712d984bb2fc6c17e2676f1a0 https://www.encodeproject.org/files/ENCFF970LAU/@@download/ENCFF970LAU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF043QUA bigBed narrowPeak optimal idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF661VOO 198325 ENCODE Processing Pipeline ac6ef401645601c6d638e7dcb6223512 https://www.encodeproject.org/files/ENCFF043QUA/@@download/ENCFF043QUA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF116VYT bam unfiltered alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 100 ENCFF807MUK, ENCFF895UGJ, ENCFF910QTP 7878769379 ENCODE Processing Pipeline 1762d75fb168bcc55f9c1fcb427a79c8 https://www.encodeproject.org/files/ENCFF116VYT/@@download/ENCFF116VYT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF769UEW bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 100 ENCFF807MUK, ENCFF895UGJ, ENCFF910QTP 3986942347 ENCODE Processing Pipeline 9ee07c873918c2b86a38967422113e26 https://www.encodeproject.org/files/ENCFF769UEW/@@download/ENCFF769UEW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF080BSG bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 100 ENCFF410PAM, ENCFF677ULQ, ENCFF807MUK 6673499996 ENCODE Processing Pipeline 9046923ca8d3466e8e8da7733b51a948 https://www.encodeproject.org/files/ENCFF080BSG/@@download/ENCFF080BSG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF218VOZ bam unfiltered alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 100 ENCFF410PAM, ENCFF677ULQ, ENCFF807MUK 10797698113 ENCODE Processing Pipeline 4041ed1cd033dac051627f508f1f0a0f https://www.encodeproject.org/files/ENCFF218VOZ/@@download/ENCFF218VOZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF079BZJ bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF160VXC, ENCFF769UEW 6419314 ENCODE Processing Pipeline d380eda55ddb0be8f68ad0ee2bddd97f https://www.encodeproject.org/files/ENCFF079BZJ/@@download/ENCFF079BZJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF318EEW bigWig signal p-value ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF160VXC, ENCFF769UEW 1410260778 ENCODE Processing Pipeline d5f85da94625298eb4463ce41546ed37 https://www.encodeproject.org/files/ENCFF318EEW/@@download/ENCFF318EEW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF816UBD bigWig fold change over control ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF160VXC, ENCFF769UEW 1384295217 ENCODE Processing Pipeline 609c43b2dbe5c10f29df00eebe7c7a19 https://www.encodeproject.org/files/ENCFF816UBD/@@download/ENCFF816UBD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF536DPF bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF080BSG, ENCFF160VXC, ENCFF769UEW, ENCFF834TUP 7344565 ENCODE Processing Pipeline 78fb4efce1a828c27cd255cc587deb66 https://www.encodeproject.org/files/ENCFF536DPF/@@download/ENCFF536DPF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF191DAE bigBed narrowPeak optimal idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF605KFA 194562 ENCODE Processing Pipeline 2f05e8c7e530c36703c03c18e124f05a https://www.encodeproject.org/files/ENCFF191DAE/@@download/ENCFF191DAE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF424HLL bigWig signal p-value ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF080BSG, ENCFF160VXC, ENCFF834TUP 2164358712 ENCODE Processing Pipeline 42cafba9b162a72263138a5c89c9bb9b https://www.encodeproject.org/files/ENCFF424HLL/@@download/ENCFF424HLL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF610ITD bigWig signal p-value ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF080BSG, ENCFF160VXC, ENCFF769UEW, ENCFF834TUP 2462719884 ENCODE Processing Pipeline eeafcd35db3f909d9fdd23d4b570a4c9 https://www.encodeproject.org/files/ENCFF610ITD/@@download/ENCFF610ITD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF319EUG bigWig fold change over control ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF080BSG, ENCFF160VXC, ENCFF834TUP 2256747106 ENCODE Processing Pipeline 5e79dc8f390f047ce45a8903cbadfc49 https://www.encodeproject.org/files/ENCFF319EUG/@@download/ENCFF319EUG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF605KFA bed narrowPeak optimal idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF001TDO, ENCFF079BZJ, ENCFF536DPF, ENCFF849NGF 74757 ENCODE Processing Pipeline 63f4f243cb229ebb48b19b79389deedf https://www.encodeproject.org/files/ENCFF605KFA/@@download/ENCFF605KFA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF330MTO bigWig fold change over control ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF080BSG, ENCFF160VXC, ENCFF769UEW, ENCFF834TUP 2701766665 ENCODE Processing Pipeline d1adb6e493640d0eb76bb51a49ae117f https://www.encodeproject.org/files/ENCFF330MTO/@@download/ENCFF330MTO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF849NGF bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF080BSG, ENCFF160VXC, ENCFF834TUP 7073903 ENCODE Processing Pipeline c95f638a38ecf23b1d2c16768da90c41 https://www.encodeproject.org/files/ENCFF849NGF/@@download/ENCFF849NGF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF852JJU bigBed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF079BZJ 11053679 ENCODE Processing Pipeline 829648b932c0d327c209890f16694f6a https://www.encodeproject.org/files/ENCFF852JJU/@@download/ENCFF852JJU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF028QJT bigBed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF849NGF 11260066 ENCODE Processing Pipeline 6ac04645f4f543b2152e8ce59c7d8649 https://www.encodeproject.org/files/ENCFF028QJT/@@download/ENCFF028QJT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF652JEE bed narrowPeak conservative idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF001TDO, ENCFF079BZJ, ENCFF536DPF, ENCFF849NGF 37938 ENCODE Processing Pipeline 03d8238d498037952031823de3466b03 https://www.encodeproject.org/files/ENCFF652JEE/@@download/ENCFF652JEE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF249QCV bigBed narrowPeak conservative idr thresholded peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF652JEE 133076 ENCODE Processing Pipeline b582763aa2193eabbb1bc4bdfc94421a https://www.encodeproject.org/files/ENCFF249QCV/@@download/ENCFF249QCV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF517NAD bigBed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1, 2 ENCFF536DPF 13316841 ENCODE Processing Pipeline f708ce4e42ec4530feb4d93dfabce223 https://www.encodeproject.org/files/ENCFF517NAD/@@download/ENCFF517NAD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF307YVY bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF886ZJD 985434528 ENCODE Processing Pipeline 599499cfe36638bd70f5bb0fd7957f91 https://www.encodeproject.org/files/ENCFF307YVY/@@download/ENCFF307YVY.bam hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF900ILU bam unfiltered alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF886ZJD 1247472394 ENCODE Processing Pipeline 6ccace31a7316238dcfbee75e55d3972 https://www.encodeproject.org/files/ENCFF900ILU/@@download/ENCFF900ILU.bam hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF774JUR bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF807MUK 890606270 ENCODE Processing Pipeline a4c4b082b9bad2ae47449407ebfbf7b6 https://www.encodeproject.org/files/ENCFF774JUR/@@download/ENCFF774JUR.bam hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF101TGH bam unfiltered alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF807MUK 1109558761 ENCODE Processing Pipeline 1de56647cd25c92e214150f5d0ed8bb4 https://www.encodeproject.org/files/ENCFF101TGH/@@download/ENCFF101TGH.bam hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF924OXC bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF774JUR 613500843 ENCODE Processing Pipeline b0a0f5e152c1b25abc184b8d6e9c522e https://www.encodeproject.org/files/ENCFF924OXC/@@download/ENCFF924OXC.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF731WLT bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF774JUR 421517556 ENCODE Processing Pipeline 2f11de07522ee00af01c974fcd026b05 https://www.encodeproject.org/files/ENCFF731WLT/@@download/ENCFF731WLT.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF389SGB bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF774JUR 5026501 ENCODE Processing Pipeline fe1b3532c7c21cf270937a99c2fc04b9 https://www.encodeproject.org/files/ENCFF389SGB/@@download/ENCFF389SGB.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF824HYC bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF307YVY, ENCFF956QBZ 5534107 ENCODE Processing Pipeline e2904f54e8e1fca09bb65b1ec56f6cf2 https://www.encodeproject.org/files/ENCFF824HYC/@@download/ENCFF824HYC.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF784MYN bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF017YFK, ENCFF307YVY, ENCFF774JUR, ENCFF956QBZ 6296772 ENCODE Processing Pipeline 9d441552c2efe43c4a709cb74b9768ea https://www.encodeproject.org/files/ENCFF784MYN/@@download/ENCFF784MYN.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF180CMR bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF389SGB 11124581 ENCODE Processing Pipeline c1099b929f6e06717f9d1bc446c4e852 https://www.encodeproject.org/files/ENCFF180CMR/@@download/ENCFF180CMR.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF905ELY bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF784MYN 13633259 ENCODE Processing Pipeline 9199799077f5b08cae0d9f70acefef95 https://www.encodeproject.org/files/ENCFF905ELY/@@download/ENCFF905ELY.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF389JEK bigBed narrowPeak conservative idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF906ECF 377276 ENCODE Processing Pipeline b9c92ec1b562df42ea8a797ff1cd00e2 https://www.encodeproject.org/files/ENCFF389JEK/@@download/ENCFF389JEK.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF906ECF bed narrowPeak conservative idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF389SGB, ENCFF784MYN, ENCFF824HYC 180002 ENCODE Processing Pipeline 2db30cc047bb41ec55b2ff3a6bb6db6d https://www.encodeproject.org/files/ENCFF906ECF/@@download/ENCFF906ECF.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF276KYQ bed narrowPeak optimal idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF389SGB, ENCFF784MYN, ENCFF824HYC 188145 ENCODE Processing Pipeline fc36640405c7258cce065ca68d02f2fc https://www.encodeproject.org/files/ENCFF276KYQ/@@download/ENCFF276KYQ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF869ZOK bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF824HYC 11386953 ENCODE Processing Pipeline d4790df54d7fb470d67defe51f4365a1 https://www.encodeproject.org/files/ENCFF869ZOK/@@download/ENCFF869ZOK.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF109URW bigBed narrowPeak optimal idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF276KYQ 390459 ENCODE Processing Pipeline 0d54f7825ed8ffbb4bae858be3756c4d https://www.encodeproject.org/files/ENCFF109URW/@@download/ENCFF109URW.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF498JVT fastq reads ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 964805267 Richard Myers, HAIB 34b7c6c1338fe06accddec15b4f91fb4 SRA:SRR5338921 https://www.encodeproject.org/files/ENCFF498JVT/@@download/ENCFF498JVT.fastq.gz Illumina HiSeq 2000 /files/ENCFF484RXR/ released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF886ZJD fastq reads ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1090252711 Richard Myers, HAIB a9c65227f1b7cad97ed5807981c10242 SRA:SRR5338920 https://www.encodeproject.org/files/ENCFF886ZJD/@@download/ENCFF886ZJD.fastq.gz Illumina HiSeq 2000 /files/ENCFF252PYF/ released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF741SOH bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF807MUK 890606242 ENCODE Processing Pipeline 4c66cdefb12464f94d3a0e7cbfa13812 https://www.encodeproject.org/files/ENCFF741SOH/@@download/ENCFF741SOH.bam hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF692CCY bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF886ZJD 985434500 ENCODE Processing Pipeline a238607924d97be566772e53da342b74 https://www.encodeproject.org/files/ENCFF692CCY/@@download/ENCFF692CCY.bam hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF850BKZ bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF741SOH 620954330 ENCODE Processing Pipeline e6ce95a7fe0c29853fefaebaa775c338 https://www.encodeproject.org/files/ENCFF850BKZ/@@download/ENCFF850BKZ.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF461EAP bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF017YFK, ENCFF307YVY, ENCFF774JUR, ENCFF956QBZ 874891329 ENCODE Processing Pipeline 2895e7ad706e093c6f95d7b2c911f196 https://www.encodeproject.org/files/ENCFF461EAP/@@download/ENCFF461EAP.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF559KKI bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF741SOH 406803008 ENCODE Processing Pipeline 96a4a21be5c7d6b60d47b8a0f67627bc https://www.encodeproject.org/files/ENCFF559KKI/@@download/ENCFF559KKI.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF322MJZ bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF307YVY, ENCFF956QBZ 833115230 ENCODE Processing Pipeline 327d3e634d9bee95423473a3d7d5b108 https://www.encodeproject.org/files/ENCFF322MJZ/@@download/ENCFF322MJZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF703BCY bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF307YVY, ENCFF956QBZ 574038238 ENCODE Processing Pipeline 8664c6fdea6fc0d5d07026feb5a5be16 https://www.encodeproject.org/files/ENCFF703BCY/@@download/ENCFF703BCY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF879HCW bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF692CCY, ENCFF956QBZ 5733069 ENCODE Processing Pipeline 76186825d37383865e921606496f6b6b https://www.encodeproject.org/files/ENCFF879HCW/@@download/ENCFF879HCW.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF856AFV bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF017YFK, ENCFF692CCY, ENCFF741SOH, ENCFF956QBZ 6472006 ENCODE Processing Pipeline 882cfb8d3684a538469008b07df480d9 https://www.encodeproject.org/files/ENCFF856AFV/@@download/ENCFF856AFV.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF903YWQ bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF017YFK, ENCFF307YVY, ENCFF774JUR, ENCFF956QBZ 941225788 ENCODE Processing Pipeline cd87ee16569430fca7210651a441a8fc https://www.encodeproject.org/files/ENCFF903YWQ/@@download/ENCFF903YWQ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF435AEO bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF741SOH 5249954 ENCODE Processing Pipeline e190fb27271ab2eb4a9202de6945a305 https://www.encodeproject.org/files/ENCFF435AEO/@@download/ENCFF435AEO.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF895PYE bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF435AEO 11223714 ENCODE Processing Pipeline c6d9a0fce9c2dae756b12870945fba8b https://www.encodeproject.org/files/ENCFF895PYE/@@download/ENCFF895PYE.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF375CGR bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF879HCW 11428590 ENCODE Processing Pipeline e646cd5ee4e1139d5bfbe94133e68c68 https://www.encodeproject.org/files/ENCFF375CGR/@@download/ENCFF375CGR.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF601SVQ bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF856AFV 13641085 ENCODE Processing Pipeline b9580ee2d22c101c7e32a77cb3b3bacd https://www.encodeproject.org/files/ENCFF601SVQ/@@download/ENCFF601SVQ.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF263RQB bam unfiltered alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF643CGH 1111285494 ENCODE Processing Pipeline d191dfef3cff1ecbad913c8ae4d0d865 https://www.encodeproject.org/files/ENCFF263RQB/@@download/ENCFF263RQB.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF338SEN bam unfiltered alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF886ZJD 1249928481 ENCODE Processing Pipeline 1a865d4512e200756cbce1745b86cf2f https://www.encodeproject.org/files/ENCFF338SEN/@@download/ENCFF338SEN.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF938DPX bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF643CGH 890518029 ENCODE Processing Pipeline d4864480d858ed7109066b5cf67669ac https://www.encodeproject.org/files/ENCFF938DPX/@@download/ENCFF938DPX.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF200FYK bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF886ZJD 985329243 ENCODE Processing Pipeline 59ce5010609c5f3bda97e3d7746755df https://www.encodeproject.org/files/ENCFF200FYK/@@download/ENCFF200FYK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF695VON bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF938DPX 460004244 ENCODE Processing Pipeline 25bd621823e0ad54b6847a4d580aaac4 https://www.encodeproject.org/files/ENCFF695VON/@@download/ENCFF695VON.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF375YLO bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF200FYK 728603038 ENCODE Processing Pipeline d2b4f387da7e48f1e395d50aad21241f https://www.encodeproject.org/files/ENCFF375YLO/@@download/ENCFF375YLO.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF988QQS bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF938DPX 427646034 ENCODE Processing Pipeline b47e6f926774b877c7a59bbb2051d72b https://www.encodeproject.org/files/ENCFF988QQS/@@download/ENCFF988QQS.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF541EBS bigWig signal p-value ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF200FYK, ENCFF938DPX 994651994 ENCODE Processing Pipeline b3b0983eb48bb7684889084ea4771a1e https://www.encodeproject.org/files/ENCFF541EBS/@@download/ENCFF541EBS.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF475XYA bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF200FYK 576312380 ENCODE Processing Pipeline df0cd6a1a983325d720963e2e2d4cb41 https://www.encodeproject.org/files/ENCFF475XYA/@@download/ENCFF475XYA.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF835WYM bigWig fold change over control ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF200FYK, ENCFF938DPX 919861019 ENCODE Processing Pipeline fc2af8d6b7c4c59bda01cef15f7f9661 https://www.encodeproject.org/files/ENCFF835WYM/@@download/ENCFF835WYM.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF986ZDJ bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF200FYK, ENCFF938DPX 6284968 ENCODE Processing Pipeline 4b0b0d27b57b114d1cc0466dc05e9027 https://www.encodeproject.org/files/ENCFF986ZDJ/@@download/ENCFF986ZDJ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF483SDU bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF938DPX 4996755 ENCODE Processing Pipeline 787e4ff73fd88e798246c773c52e8f2e https://www.encodeproject.org/files/ENCFF483SDU/@@download/ENCFF483SDU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF405LID bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF200FYK 5532250 ENCODE Processing Pipeline 700bf9cc4fb5d064702bb358741e1deb https://www.encodeproject.org/files/ENCFF405LID/@@download/ENCFF405LID.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF206WVH bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF483SDU 11130157 ENCODE Processing Pipeline b1dc8e89105b72feb20d8af21804bb16 https://www.encodeproject.org/files/ENCFF206WVH/@@download/ENCFF206WVH.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF540PIU bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF986ZDJ 13635570 ENCODE Processing Pipeline 96a529ab9fa95db0cb7fc896bac5ac70 https://www.encodeproject.org/files/ENCFF540PIU/@@download/ENCFF540PIU.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF151YWJ bigBed narrowPeak optimal idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF511AZU 379743 ENCODE Processing Pipeline 0850bc7c03d11a68130cb35d3c70b8f7 https://www.encodeproject.org/files/ENCFF151YWJ/@@download/ENCFF151YWJ.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF354YAK bigBed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF405LID 11388190 ENCODE Processing Pipeline 6147630fd990bf437b060bcb43d56c08 https://www.encodeproject.org/files/ENCFF354YAK/@@download/ENCFF354YAK.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF511AZU bed narrowPeak optimal idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF405LID, ENCFF419RSJ, ENCFF483SDU, ENCFF986ZDJ 181390 ENCODE Processing Pipeline f370110454ab3734ece21af99e224a47 https://www.encodeproject.org/files/ENCFF511AZU/@@download/ENCFF511AZU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF980XXN bigBed narrowPeak optimal idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF794MHJ 276811 ENCODE Processing Pipeline b6a73ccd4e4336474b0b501eb1d303ba https://www.encodeproject.org/files/ENCFF980XXN/@@download/ENCFF980XXN.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF430DLC bigBed narrowPeak conservative idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF158WQY 269766 ENCODE Processing Pipeline 8edaf8e232c8c9fe788304dfd76238b3 https://www.encodeproject.org/files/ENCFF430DLC/@@download/ENCFF430DLC.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF158WQY bed narrowPeak conservative idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF435AEO, ENCFF856AFV, ENCFF879HCW 146551 ENCODE Processing Pipeline b1fdd7e62ea46ba0845c35304b537a96 https://www.encodeproject.org/files/ENCFF158WQY/@@download/ENCFF158WQY.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF794MHJ bed narrowPeak optimal idr thresholded peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF435AEO, ENCFF856AFV, ENCFF879HCW 152698 ENCODE Processing Pipeline 28bd1c40b861835abf7bdeae27518a7e https://www.encodeproject.org/files/ENCFF794MHJ/@@download/ENCFF794MHJ.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF599NEO bam unfiltered alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF504MVU, ENCFF807MUK, ENCFF887CDX 5234183463 ENCODE Processing Pipeline 46b092f1f85a41e7f603ed45e9b85c4f https://www.encodeproject.org/files/ENCFF599NEO/@@download/ENCFF599NEO.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF548NJR bam unfiltered alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF381AJO, ENCFF698RJT, ENCFF807MUK 5677565168 ENCODE Processing Pipeline e9d9ef7ad6aa91250fd56349b6144d1a https://www.encodeproject.org/files/ENCFF548NJR/@@download/ENCFF548NJR.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF887CDX fastq reads ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF504MVU 2528960819 Michael Snyder, Stanford f48ac3f1fc856b01653fc9480c18bc7a https://www.encodeproject.org/files/ENCFF887CDX/@@download/ENCFF887CDX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF381AJO fastq reads ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF698RJT 2850538159 Michael Snyder, Stanford d40cd26a3beeb1c52c6933f4ae1e323b https://www.encodeproject.org/files/ENCFF381AJO/@@download/ENCFF381AJO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF504MVU fastq reads ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF887CDX 2574119738 Michael Snyder, Stanford 09641c89f5264fcf74ee707096c491c7 https://www.encodeproject.org/files/ENCFF504MVU/@@download/ENCFF504MVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF698RJT fastq reads ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF381AJO 2795201623 Michael Snyder, Stanford 2508e475654e132d0c1c410deea9e222 https://www.encodeproject.org/files/ENCFF698RJT/@@download/ENCFF698RJT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF960FUD bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF381AJO, ENCFF698RJT, ENCFF807MUK 4434335142 ENCODE Processing Pipeline a40b4763fb6e122b39dc61a54cbc6662 https://www.encodeproject.org/files/ENCFF960FUD/@@download/ENCFF960FUD.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF767WRS bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF504MVU, ENCFF807MUK, ENCFF887CDX 4254318914 ENCODE Processing Pipeline 93fae145e6e36b2d9c1bc2ef8f1ed107 https://www.encodeproject.org/files/ENCFF767WRS/@@download/ENCFF767WRS.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF048GOD bam unfiltered alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF504MVU, ENCFF643CGH, ENCFF887CDX 5235962982 ENCODE Processing Pipeline dce08b535f50bb4ba632351841a88f74 https://www.encodeproject.org/files/ENCFF048GOD/@@download/ENCFF048GOD.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF329TLK bam unfiltered alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF381AJO, ENCFF643CGH, ENCFF698RJT 5678980607 ENCODE Processing Pipeline 9b4be4fdf9cc79adc035c34c7c2d721e https://www.encodeproject.org/files/ENCFF329TLK/@@download/ENCFF329TLK.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF838GWC bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF381AJO, ENCFF643CGH, ENCFF698RJT 4437749369 ENCODE Processing Pipeline d8d37527df3f0cd0e258b37aac9f0fb9 https://www.encodeproject.org/files/ENCFF838GWC/@@download/ENCFF838GWC.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF183DVK bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF504MVU, ENCFF643CGH, ENCFF887CDX 4257787373 ENCODE Processing Pipeline 64f72a1aa3d741fd3ba5b6620b07a705 https://www.encodeproject.org/files/ENCFF183DVK/@@download/ENCFF183DVK.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF094PNJ bigWig signal p-value ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF183DVK, ENCFF910IKB 1011094514 ENCODE Processing Pipeline 6f2dd11301362b0708230b55a493e11e https://www.encodeproject.org/files/ENCFF094PNJ/@@download/ENCFF094PNJ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF250YLO bigWig signal p-value ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF838GWC 986203125 ENCODE Processing Pipeline a53632fd533e17faa4df7bc06c99da7e https://www.encodeproject.org/files/ENCFF250YLO/@@download/ENCFF250YLO.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF323MBF bigWig signal p-value ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF183DVK, ENCFF227IZS, ENCFF838GWC, ENCFF910IKB 1619485236 ENCODE Processing Pipeline 99106d6c1f6938da93c3b8262bd52eeb https://www.encodeproject.org/files/ENCFF323MBF/@@download/ENCFF323MBF.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF790DMB bigWig fold change over control ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF183DVK, ENCFF910IKB 1115551646 ENCODE Processing Pipeline b0dc2442cdaaa381739a358eab4fa2d3 https://www.encodeproject.org/files/ENCFF790DMB/@@download/ENCFF790DMB.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF337JKA bigWig fold change over control ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF838GWC 1107997838 ENCODE Processing Pipeline 010ef9aa390d9775ae4d593455a4cad1 https://www.encodeproject.org/files/ENCFF337JKA/@@download/ENCFF337JKA.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF902BRN bigWig fold change over control ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF183DVK, ENCFF227IZS, ENCFF838GWC, ENCFF910IKB 2034301936 ENCODE Processing Pipeline 9130a6c348f91cdba6ce2e58d14ca153 https://www.encodeproject.org/files/ENCFF902BRN/@@download/ENCFF902BRN.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF696GBH bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF183DVK, ENCFF910IKB 7002811 ENCODE Processing Pipeline 5ecfe3168dce81fee1ae97b530604439 https://www.encodeproject.org/files/ENCFF696GBH/@@download/ENCFF696GBH.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF205ADU bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF183DVK, ENCFF227IZS, ENCFF838GWC, ENCFF910IKB 7209549 ENCODE Processing Pipeline 6198eae85cd548308a956a8729678534 https://www.encodeproject.org/files/ENCFF205ADU/@@download/ENCFF205ADU.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF159ZJR bigBed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF696GBH 13171612 ENCODE Processing Pipeline 975fe907945119cdb38b8051ec4055bc https://www.encodeproject.org/files/ENCFF159ZJR/@@download/ENCFF159ZJR.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF369FKU bigBed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF205ADU 13039655 ENCODE Processing Pipeline 035f22bf8808a370dab9c6e76a1815d9 https://www.encodeproject.org/files/ENCFF369FKU/@@download/ENCFF369FKU.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF736VPE bigBed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF944EQQ 13114854 ENCODE Processing Pipeline 26fd08296100b766c9994695d8e80b9f https://www.encodeproject.org/files/ENCFF736VPE/@@download/ENCFF736VPE.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF944EQQ bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF838GWC 7000541 ENCODE Processing Pipeline 8e291fbf15028a36ce6c1c878ab487fd https://www.encodeproject.org/files/ENCFF944EQQ/@@download/ENCFF944EQQ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF091RKP bigBed narrowPeak conservative idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF589ZQU 1065483 ENCODE Processing Pipeline 6761d521807d940093515c1541cdf604 https://www.encodeproject.org/files/ENCFF091RKP/@@download/ENCFF091RKP.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF756JSH bigBed narrowPeak optimal idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF700DXR 1090173 ENCODE Processing Pipeline 7fc6109760311aa85246b25f9f0876ba https://www.encodeproject.org/files/ENCFF756JSH/@@download/ENCFF756JSH.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF589ZQU bed narrowPeak conservative idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF205ADU, ENCFF419RSJ, ENCFF696GBH, ENCFF944EQQ 543451 ENCODE Processing Pipeline 938b1f584ecd2aa84d95b296467e610b https://www.encodeproject.org/files/ENCFF589ZQU/@@download/ENCFF589ZQU.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF700DXR bed narrowPeak optimal idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF205ADU, ENCFF419RSJ, ENCFF696GBH, ENCFF944EQQ 556975 ENCODE Processing Pipeline 3762f1d9d39f122dad2f23e26972d833 https://www.encodeproject.org/files/ENCFF700DXR/@@download/ENCFF700DXR.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF445FFT bigWig signal p-value ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF767WRS 1018907981 ENCODE Processing Pipeline 842fd4ba26224efc244aaa85b2c168f4 https://www.encodeproject.org/files/ENCFF445FFT/@@download/ENCFF445FFT.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF634YME bigWig fold change over control ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF767WRS 1131190993 ENCODE Processing Pipeline ab50b5a1a1eb864897909727785aebbd https://www.encodeproject.org/files/ENCFF634YME/@@download/ENCFF634YME.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF280LGH bigWig signal p-value ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF960FUD 1012537621 ENCODE Processing Pipeline 4415d8b19ba055976d87e34198609b8a https://www.encodeproject.org/files/ENCFF280LGH/@@download/ENCFF280LGH.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF521FXD bigWig signal p-value ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF767WRS, ENCFF960FUD 1887106612 ENCODE Processing Pipeline 0c410cc51c0d32a1acae1cc0d139dffc https://www.encodeproject.org/files/ENCFF521FXD/@@download/ENCFF521FXD.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF389ZEM bigWig fold change over control ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF767WRS, ENCFF960FUD 2008589496 ENCODE Processing Pipeline a674017ab86f10a3a4e1637345aa2201 https://www.encodeproject.org/files/ENCFF389ZEM/@@download/ENCFF389ZEM.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF032UKF bigWig fold change over control ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF960FUD 1103293301 ENCODE Processing Pipeline 4b5da70d2f95e86eb3f3bd1b912a0ea0 https://www.encodeproject.org/files/ENCFF032UKF/@@download/ENCFF032UKF.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF451ZHQ bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF767WRS, ENCFF960FUD 7198629 ENCODE Processing Pipeline f047b4467e442222518375c0d8c8d972 https://www.encodeproject.org/files/ENCFF451ZHQ/@@download/ENCFF451ZHQ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF507BPN bigBed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF566QTT 13109001 ENCODE Processing Pipeline 86a1769f98d51681eedaa75eaee882a8 https://www.encodeproject.org/files/ENCFF507BPN/@@download/ENCFF507BPN.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF527OVH bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF767WRS 7016503 ENCODE Processing Pipeline 4d1f0ebce3bbc49cd26c4b43daf8ae07 https://www.encodeproject.org/files/ENCFF527OVH/@@download/ENCFF527OVH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF566QTT bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF960FUD 7002875 ENCODE Processing Pipeline 600fb82586199d1124e579a2893f3444 https://www.encodeproject.org/files/ENCFF566QTT/@@download/ENCFF566QTT.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF165YSV bigBed narrowPeak optimal idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF517KRT 1075131 ENCODE Processing Pipeline 6cbd19074aa46dd9de74dcae7bec0feb https://www.encodeproject.org/files/ENCFF165YSV/@@download/ENCFF165YSV.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF898NOY bigBed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF527OVH 13190730 ENCODE Processing Pipeline d54c566550ad2ccd8cc69cb774af4242 https://www.encodeproject.org/files/ENCFF898NOY/@@download/ENCFF898NOY.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF599EMD bigBed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF451ZHQ 13015500 ENCODE Processing Pipeline ca45bfc65dc14702b3602ff47fa8374d https://www.encodeproject.org/files/ENCFF599EMD/@@download/ENCFF599EMD.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF325IMI bed narrowPeak conservative idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF451ZHQ, ENCFF527OVH, ENCFF566QTT 536740 ENCODE Processing Pipeline 56be7d89607d0df94b197638b90043a1 https://www.encodeproject.org/files/ENCFF325IMI/@@download/ENCFF325IMI.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF517KRT bed narrowPeak optimal idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF451ZHQ, ENCFF527OVH, ENCFF566QTT 549424 ENCODE Processing Pipeline 1f83d9a4aa4dfe13ce2316b957eee10c https://www.encodeproject.org/files/ENCFF517KRT/@@download/ENCFF517KRT.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF409LJY bigBed narrowPeak conservative idr thresholded peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF325IMI 1052754 ENCODE Processing Pipeline 132d2957908199921b18af290d107e7e https://www.encodeproject.org/files/ENCFF409LJY/@@download/ENCFF409LJY.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF618HND fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF467WML 1295172552 Michael Snyder, Stanford 55a3359e7babc2501e2c7e342c8e54da https://www.encodeproject.org/files/ENCFF618HND/@@download/ENCFF618HND.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF502CGN fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF004AXH 1030497725 Michael Snyder, Stanford 811bc8574c23d2f1599d43a4169c3b26 https://www.encodeproject.org/files/ENCFF502CGN/@@download/ENCFF502CGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF004AXH fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF502CGN 1067406339 Michael Snyder, Stanford 0a4874b823d787a7046f3a899d94a8d8 https://www.encodeproject.org/files/ENCFF004AXH/@@download/ENCFF004AXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF467WML fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF618HND 1335056785 Michael Snyder, Stanford 96f4ca0689eb36bc0a32b90be0038350 https://www.encodeproject.org/files/ENCFF467WML/@@download/ENCFF467WML.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF755VSZ bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF004AXH, ENCFF502CGN, ENCFF807MUK 1601945573 ENCODE Processing Pipeline 7bbec33cd35d91e635a526af9a514c98 https://www.encodeproject.org/files/ENCFF755VSZ/@@download/ENCFF755VSZ.bam hg19 archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF706FSL bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF467WML, ENCFF618HND, ENCFF807MUK 2397152881 ENCODE Processing Pipeline 6c2f82db4a6a62a8e933f0ca427733e0 https://www.encodeproject.org/files/ENCFF706FSL/@@download/ENCFF706FSL.bam hg19 archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF317DLF fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF176UXT 4478270480 Michael Snyder, Stanford 93b47f4de242ec1a526204f2f387d3dd https://www.encodeproject.org/files/ENCFF317DLF/@@download/ENCFF317DLF.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF989GZO fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF428IIQ 4125016520 Michael Snyder, Stanford 24fe8841951fc76e235ae93e2aab5714 https://www.encodeproject.org/files/ENCFF989GZO/@@download/ENCFF989GZO.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF176UXT fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF317DLF 4213714419 Michael Snyder, Stanford 85ac3380b3daf2c4ef75021b68485eb2 https://www.encodeproject.org/files/ENCFF176UXT/@@download/ENCFF176UXT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF428IIQ fastq reads ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF989GZO 3678205402 Michael Snyder, Stanford 44e8ad1f760c697bdd019fa815f2e2a4 https://www.encodeproject.org/files/ENCFF428IIQ/@@download/ENCFF428IIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF024LRR bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF643CGH, ENCFF989GZO 6506315507 ENCODE Processing Pipeline 4e6e4b3d5eb97f9e1d92da6116a89291 https://www.encodeproject.org/files/ENCFF024LRR/@@download/ENCFF024LRR.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF353RRA bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF643CGH 7667783222 ENCODE Processing Pipeline 036408601f260019aa039e794bed97cf https://www.encodeproject.org/files/ENCFF353RRA/@@download/ENCFF353RRA.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF599RWY bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF643CGH, ENCFF989GZO 2968560715 ENCODE Processing Pipeline 91d34e573dab4baa1b612e4bb23e12ca https://www.encodeproject.org/files/ENCFF599RWY/@@download/ENCFF599RWY.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF034ZKO bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF643CGH 5267549051 ENCODE Processing Pipeline f5e03dfacb1ca23332076d803b12be3e https://www.encodeproject.org/files/ENCFF034ZKO/@@download/ENCFF034ZKO.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF256XBG bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF034ZKO, ENCFF322NTO, ENCFF666ATR 7202208 ENCODE Processing Pipeline b9f43f01f4eadb8a089e455f4498ed54 https://www.encodeproject.org/files/ENCFF256XBG/@@download/ENCFF256XBG.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF240ANF bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF034ZKO, ENCFF322NTO, ENCFF599RWY, ENCFF666ATR 2265934456 ENCODE Processing Pipeline c9a09eb0a9388d7fdd36ce2d2d1e5ba9 https://www.encodeproject.org/files/ENCFF240ANF/@@download/ENCFF240ANF.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF214RFI bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF599RWY, ENCFF666ATR 1115259030 ENCODE Processing Pipeline ef1291ecd55faa4c916e096233cf58b4 https://www.encodeproject.org/files/ENCFF214RFI/@@download/ENCFF214RFI.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF198WFH bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF034ZKO, ENCFF322NTO, ENCFF599RWY, ENCFF666ATR 7323353 ENCODE Processing Pipeline 8ce03b703a02b8ed28c9b7a7ab46b4d6 https://www.encodeproject.org/files/ENCFF198WFH/@@download/ENCFF198WFH.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF156NPR bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF198WFH 13139263 ENCODE Processing Pipeline e95481c0b7c426ba563921149cf93d34 https://www.encodeproject.org/files/ENCFF156NPR/@@download/ENCFF156NPR.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF704PDA bed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF198WFH, ENCFF256XBG, ENCFF419RSJ, ENCFF796ASI 463767 ENCODE Processing Pipeline 203f019614051d47155587ef8322e995 https://www.encodeproject.org/files/ENCFF704PDA/@@download/ENCFF704PDA.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF241TZA bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF599RWY, ENCFF666ATR 958203089 ENCODE Processing Pipeline 59903197a8711cd090d586f5275351c3 https://www.encodeproject.org/files/ENCFF241TZA/@@download/ENCFF241TZA.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF796ASI bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF599RWY, ENCFF666ATR 6559379 ENCODE Processing Pipeline a885122091145f32555be19e5a823d7f https://www.encodeproject.org/files/ENCFF796ASI/@@download/ENCFF796ASI.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF729NDS bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF256XBG 13094171 ENCODE Processing Pipeline 203f2efa9dafe34bbec69488d8282aa1 https://www.encodeproject.org/files/ENCFF729NDS/@@download/ENCFF729NDS.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF033AFW bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF034ZKO, ENCFF322NTO, ENCFF666ATR 1903356764 ENCODE Processing Pipeline 6c20d618a9a0e5103a3e1820d436f064 https://www.encodeproject.org/files/ENCFF033AFW/@@download/ENCFF033AFW.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF795PWZ bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF034ZKO, ENCFF322NTO, ENCFF666ATR 2032483892 ENCODE Processing Pipeline bbb9513c77eda2b1777cfb7274c8deb5 https://www.encodeproject.org/files/ENCFF795PWZ/@@download/ENCFF795PWZ.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF724KWV bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF034ZKO, ENCFF322NTO, ENCFF599RWY, ENCFF666ATR 2381088283 ENCODE Processing Pipeline 9d5c97ce40f43a12e9511ba0d979ada4 https://www.encodeproject.org/files/ENCFF724KWV/@@download/ENCFF724KWV.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF254RSV bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF796ASI 13415288 ENCODE Processing Pipeline 269454f472f8f38cb812f18912105af1 https://www.encodeproject.org/files/ENCFF254RSV/@@download/ENCFF254RSV.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF120YFV bigBed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF704PDA 903507 ENCODE Processing Pipeline 4eaf190f50e0e0ae1688fed4e74858be https://www.encodeproject.org/files/ENCFF120YFV/@@download/ENCFF120YFV.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF899PKC bed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF198WFH, ENCFF256XBG, ENCFF419RSJ, ENCFF796ASI 355907 ENCODE Processing Pipeline 82cdb1d5f50b3e9a35350ffed2288624 https://www.encodeproject.org/files/ENCFF899PKC/@@download/ENCFF899PKC.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF159CHP bigBed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF899PKC 734655 ENCODE Processing Pipeline 4c8869b1fc86ffc7b8bb7fa06eb33e0a https://www.encodeproject.org/files/ENCFF159CHP/@@download/ENCFF159CHP.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF334IYA bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF807MUK, ENCFF989GZO 6514442524 ENCODE Processing Pipeline b74ef2a4e1f8927458eed06e8f663d14 https://www.encodeproject.org/files/ENCFF334IYA/@@download/ENCFF334IYA.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF375JDH bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF807MUK, ENCFF989GZO 2962023548 ENCODE Processing Pipeline 95a2adb885636432d5e549520d317af7 https://www.encodeproject.org/files/ENCFF375JDH/@@download/ENCFF375JDH.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF254KPP bam unfiltered alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF807MUK 7672180119 ENCODE Processing Pipeline 50898c86e8cdde687988bca8c85d9c5e https://www.encodeproject.org/files/ENCFF254KPP/@@download/ENCFF254KPP.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF302UOS bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF807MUK 5251977183 ENCODE Processing Pipeline b00a37bff2d975811ff3735c4ae9142e https://www.encodeproject.org/files/ENCFF302UOS/@@download/ENCFF302UOS.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF863ATI bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 1059584007 ENCODE Processing Pipeline 066819d187055a1a4d49603d98c7e627 https://www.encodeproject.org/files/ENCFF863ATI/@@download/ENCFF863ATI.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF144UVB bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 1715761852 ENCODE Processing Pipeline dd2ab8bf29b82d84f08bd3d97dea1880 https://www.encodeproject.org/files/ENCFF144UVB/@@download/ENCFF144UVB.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF137UAI bigWig signal p-value ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF302UOS, ENCFF375JDH, ENCFF592WAL, ENCFF901CND 2330253655 ENCODE Processing Pipeline edee522e75648eb803b8655666fb892c https://www.encodeproject.org/files/ENCFF137UAI/@@download/ENCFF137UAI.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF549TIS bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF302UOS, ENCFF375JDH, ENCFF592WAL, ENCFF901CND 7284670 ENCODE Processing Pipeline 32dfce15e6348f87b69dbdd172bae9d4 https://www.encodeproject.org/files/ENCFF549TIS/@@download/ENCFF549TIS.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF165YUB bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF452APP 13131124 ENCODE Processing Pipeline ee8cb0c7f70412af12d6f425e58426b9 https://www.encodeproject.org/files/ENCFF165YUB/@@download/ENCFF165YUB.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF960NVP bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF549TIS 13100430 ENCODE Processing Pipeline 37572772ef0e8a093a8603763a31d5fb https://www.encodeproject.org/files/ENCFF960NVP/@@download/ENCFF960NVP.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF704ZYN bed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF452APP, ENCFF473OII, ENCFF549TIS 449441 ENCODE Processing Pipeline d57b85ace159f8e7ba3cdff45e9b3338 https://www.encodeproject.org/files/ENCFF704ZYN/@@download/ENCFF704ZYN.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF994NSB bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 2048266537 ENCODE Processing Pipeline 76817db5d64550a56f17f612e2804c6e https://www.encodeproject.org/files/ENCFF994NSB/@@download/ENCFF994NSB.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF799JAS bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF302UOS, ENCFF375JDH, ENCFF592WAL, ENCFF901CND 2360893001 ENCODE Processing Pipeline 2c2eef0839c101aca91b70c3f473d826 https://www.encodeproject.org/files/ENCFF799JAS/@@download/ENCFF799JAS.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF473OII bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 6546459 ENCODE Processing Pipeline 9ed939dcb5162b559ebec59f2374d1f5 https://www.encodeproject.org/files/ENCFF473OII/@@download/ENCFF473OII.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF663YUR bigBed narrowPeak optimal idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF704ZYN 888285 ENCODE Processing Pipeline ed61e89ce417fe229bf27831b70963e8 https://www.encodeproject.org/files/ENCFF663YUR/@@download/ENCFF663YUR.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF879RZD bigWig fold change over control ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 1116342851 ENCODE Processing Pipeline 7e0e1e6c83875365b8e935e7471805bf https://www.encodeproject.org/files/ENCFF879RZD/@@download/ENCFF879RZD.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF452APP bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 7232348 ENCODE Processing Pipeline d8e765c46ac02fdee078d67da3163340 https://www.encodeproject.org/files/ENCFF452APP/@@download/ENCFF452APP.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF301RNU bigBed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF473OII 13389868 ENCODE Processing Pipeline 0bbed4fcebfac0013e60611c3cba1151 https://www.encodeproject.org/files/ENCFF301RNU/@@download/ENCFF301RNU.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF498BHJ bed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF452APP, ENCFF473OII, ENCFF549TIS 343248 ENCODE Processing Pipeline e72ec75f976367450202a7cc88b94f56 https://www.encodeproject.org/files/ENCFF498BHJ/@@download/ENCFF498BHJ.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF450FQN bigBed narrowPeak conservative idr thresholded peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF498BHJ 719152 ENCODE Processing Pipeline 18d07b946bfe384d2d0dfd92aeb8592f https://www.encodeproject.org/files/ENCFF450FQN/@@download/ENCFF450FQN.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF000VYJ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 548813423 Michael Snyder, Stanford d40f850c2a4d12fe5381ab2c64278186 https://www.encodeproject.org/files/ENCFF000VYJ/@@download/ENCFF000VYJ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VYK bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 568196210 Michael Snyder, Stanford f4662da80972dfc4d670ee33470c49e3 https://www.encodeproject.org/files/ENCFF000VYK/@@download/ENCFF000VYK.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VYL bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEQ 2269487 Michael Snyder, Stanford 3e8ae973063d599ae13d2fc45437cc4b https://www.encodeproject.org/files/ENCFF000VYL/@@download/ENCFF000VYL.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VYM fastq reads ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1127928550 Michael Snyder, Stanford a86b8fb97032a9db2fa4940d81b2dc60 https://www.encodeproject.org/files/ENCFF000VYM/@@download/ENCFF000VYM.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VYO fastq reads ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1127357790 Michael Snyder, Stanford 80fa41a07af09297758649ccb40a2a04 https://www.encodeproject.org/files/ENCFF000VYO/@@download/ENCFF000VYO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VYQ bigWig signal ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 419482827 Michael Snyder, Stanford a87c68ea617e5ae4321992e36fe580d9 https://www.encodeproject.org/files/ENCFF000VYQ/@@download/ENCFF000VYQ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VEQ bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 919322 Michael Snyder, Stanford ff0cca0c20dd2701091eac556a813af1 https://www.encodeproject.org/files/ENCFF001VEQ/@@download/ENCFF001VEQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002COX bed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 487628 ENCODE Consortium Analysis Working Group 4fbb1074820a315f2c46941fd87d8591 https://www.encodeproject.org/files/ENCFF002COX/@@download/ENCFF002COX.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF346FHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COX 1157976 ENCODE Consortium e23d99b1c47a5dbba24ad748bfcadca6 https://www.encodeproject.org/files/ENCFF346FHC/@@download/ENCFF346FHC.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF387JUO bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF643CGH 1115869217 ENCODE Processing Pipeline def74a0fcbe3bbf9fa4fa0144dd5cf7c https://www.encodeproject.org/files/ENCFF387JUO/@@download/ENCFF387JUO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF122OAU bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF643CGH 1130378835 ENCODE Processing Pipeline 30ce71a3b9b7e7934ac857619f46f1a6 https://www.encodeproject.org/files/ENCFF122OAU/@@download/ENCFF122OAU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF406RXQ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF643CGH 695316999 ENCODE Processing Pipeline 54f9d433af352ddbb2cb1bcd0fc66cc5 https://www.encodeproject.org/files/ENCFF406RXQ/@@download/ENCFF406RXQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352KKZ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF643CGH 739841442 ENCODE Processing Pipeline 0bab0a41373568764e8c6c79874c0978 https://www.encodeproject.org/files/ENCFF352KKZ/@@download/ENCFF352KKZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF308ZET bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF807MUK 1111858793 ENCODE Processing Pipeline 98313e9bbcf1093f80b2560f6dbf1df8 https://www.encodeproject.org/files/ENCFF308ZET/@@download/ENCFF308ZET.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962MLT bam unfiltered alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF807MUK 1127096657 ENCODE Processing Pipeline 8cefbd4b663867693bf6720d7dcce1a5 https://www.encodeproject.org/files/ENCFF962MLT/@@download/ENCFF962MLT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF289UDS bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF807MUK 695105877 ENCODE Processing Pipeline a0378ebfb66c25e8325c1b296df35402 https://www.encodeproject.org/files/ENCFF289UDS/@@download/ENCFF289UDS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509RNF bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF807MUK 734644036 ENCODE Processing Pipeline 6b5947940c3bcf70152e540a66cdc645 https://www.encodeproject.org/files/ENCFF509RNF/@@download/ENCFF509RNF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699MGL bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF289UDS, ENCFF509RNF, ENCFF545DZO 157251960 ENCODE Processing Pipeline bc310f30a9970395b05465c79ea7e36e https://www.encodeproject.org/files/ENCFF699MGL/@@download/ENCFF699MGL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF197TNR bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF289UDS, ENCFF509RNF, ENCFF545DZO 523292152 ENCODE Processing Pipeline b6838eaa32cb0dadf989b47966ccfdcc https://www.encodeproject.org/files/ENCFF197TNR/@@download/ENCFF197TNR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138BYH bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 4568115 ENCODE Processing Pipeline ec1198a4c0a1cd0819201529ef26e465 https://www.encodeproject.org/files/ENCFF138BYH/@@download/ENCFF138BYH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF084RZM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF288RYL 894743 ENCODE Processing Pipeline f7a8b9344743eafc5cb3f625d1b1b1b4 https://www.encodeproject.org/files/ENCFF084RZM/@@download/ENCFF084RZM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF066XDW bed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF007UID, ENCFF138BYH, ENCFF440OBY 438480 ENCODE Processing Pipeline 819540d756d42218522ec2e8fd9c0b87 https://www.encodeproject.org/files/ENCFF066XDW/@@download/ENCFF066XDW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF158LVD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF066XDW 836291 ENCODE Processing Pipeline a49a2d2f52436919a3900d1d99430bdd https://www.encodeproject.org/files/ENCFF158LVD/@@download/ENCFF158LVD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF073BOW bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 177799447 ENCODE Processing Pipeline 4fa9165ebece769dfc55989fb71c49b7 https://www.encodeproject.org/files/ENCFF073BOW/@@download/ENCFF073BOW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF031ILR bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 75417915 ENCODE Processing Pipeline eca6323d9266e67fb0bd4a654945130c https://www.encodeproject.org/files/ENCFF031ILR/@@download/ENCFF031ILR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF796EIP bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF007UID 13166374 ENCODE Processing Pipeline b1f2ba0c86be76470a0e342b68ea1fef https://www.encodeproject.org/files/ENCFF796EIP/@@download/ENCFF796EIP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF478GCJ bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF440OBY 10513660 ENCODE Processing Pipeline 8e38f11a4be88d5968942115c1596df6 https://www.encodeproject.org/files/ENCFF478GCJ/@@download/ENCFF478GCJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF422POF bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 287349906 ENCODE Processing Pipeline 7c9222084e681685fa6a4e600f48883b https://www.encodeproject.org/files/ENCFF422POF/@@download/ENCFF422POF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF440OBY bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 4474802 ENCODE Processing Pipeline 3a3df51f9159bd917167447c0f6804b9 https://www.encodeproject.org/files/ENCFF440OBY/@@download/ENCFF440OBY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF288RYL bed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF007UID, ENCFF138BYH, ENCFF440OBY 389764 ENCODE Processing Pipeline fb2e4bd09e676e2360986c843d0590f1 https://www.encodeproject.org/files/ENCFF288RYL/@@download/ENCFF288RYL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF245CZT bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 260985273 ENCODE Processing Pipeline be4ee9eeb72a086d216e698527a6e896 https://www.encodeproject.org/files/ENCFF245CZT/@@download/ENCFF245CZT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF007UID bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF289UDS, ENCFF509RNF, ENCFF545DZO 5277084 ENCODE Processing Pipeline b6556d1943a37b81ad984fa4fc39e864 https://www.encodeproject.org/files/ENCFF007UID/@@download/ENCFF007UID.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF840ZUM bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF138BYH 10361783 ENCODE Processing Pipeline 56e5c98978948ffb4afcaf64559d4e6b https://www.encodeproject.org/files/ENCFF840ZUM/@@download/ENCFF840ZUM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF408GSP bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352KKZ, ENCFF477ZKJ 260438909 ENCODE Processing Pipeline bf2aade11d1337de4581df9fcb83bedb https://www.encodeproject.org/files/ENCFF408GSP/@@download/ENCFF408GSP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF002ROI bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 177824950 ENCODE Processing Pipeline 21b5bf5ffc91fd2861d8419090a7bb88 https://www.encodeproject.org/files/ENCFF002ROI/@@download/ENCFF002ROI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884FTZ bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 289272983 ENCODE Processing Pipeline 3da0d26e584a81f0a3ed28aa0ea0dea1 https://www.encodeproject.org/files/ENCFF884FTZ/@@download/ENCFF884FTZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF947GBI bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF495XBO 10400026 ENCODE Processing Pipeline 170c8d37a4f6c2dee3ff126b3d1c75d3 https://www.encodeproject.org/files/ENCFF947GBI/@@download/ENCFF947GBI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460RWM bed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF089PBY, ENCFF419RSJ, ENCFF495XBO, ENCFF525RFX 401031 ENCODE Processing Pipeline 4345233362c98082a4820110d4bb3c01 https://www.encodeproject.org/files/ENCFF460RWM/@@download/ENCFF460RWM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF348STZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF089PBY, ENCFF419RSJ, ENCFF495XBO, ENCFF525RFX 431986 ENCODE Processing Pipeline b36f59bcb5d64a7cf8c4c9c66f2a5fc7 https://www.encodeproject.org/files/ENCFF348STZ/@@download/ENCFF348STZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF525RFX bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352KKZ, ENCFF477ZKJ 4476859 ENCODE Processing Pipeline 52fc3f41ef7beaf0a2ee16a749b85eb4 https://www.encodeproject.org/files/ENCFF525RFX/@@download/ENCFF525RFX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF089PBY bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF352KKZ, ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 5275299 ENCODE Processing Pipeline 964396b6642cb80e9c6ee7645b379671 https://www.encodeproject.org/files/ENCFF089PBY/@@download/ENCFF089PBY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF342MBC bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF089PBY 13165464 ENCODE Processing Pipeline 0f708b6195ba58d0e3234525406fc77f https://www.encodeproject.org/files/ENCFF342MBC/@@download/ENCFF342MBC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF591HVR bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352KKZ, ENCFF477ZKJ 75339962 ENCODE Processing Pipeline c2654efa235e0a08673fedadc1cff14e https://www.encodeproject.org/files/ENCFF591HVR/@@download/ENCFF591HVR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF495XBO bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 4604839 ENCODE Processing Pipeline 74725a016cbadfb45e59c7508331d7d8 https://www.encodeproject.org/files/ENCFF495XBO/@@download/ENCFF495XBO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF370YXY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF460RWM 912369 ENCODE Processing Pipeline e3d746241d568d362e5f7c9f083e2d43 https://www.encodeproject.org/files/ENCFF370YXY/@@download/ENCFF370YXY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF835KDR bigWig signal p-value ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF352KKZ, ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 158078537 ENCODE Processing Pipeline 6baecfba475945a4727f2cdce43c8a35 https://www.encodeproject.org/files/ENCFF835KDR/@@download/ENCFF835KDR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF256TBW bigWig fold change over control ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF352KKZ, ENCFF406RXQ, ENCFF477ZKJ, ENCFF710SMS 526908891 ENCODE Processing Pipeline 5444514c91195bdd2a8841b605981c4b https://www.encodeproject.org/files/ENCFF256TBW/@@download/ENCFF256TBW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF845JOF bigBed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF525RFX 10513700 ENCODE Processing Pipeline 4ddfa52b85c9552049c61d7577310cff https://www.encodeproject.org/files/ENCFF845JOF/@@download/ENCFF845JOF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF093NZJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF348STZ 824010 ENCODE Processing Pipeline f44e4db74876c65c4dbb5cf8e1e6e9df https://www.encodeproject.org/files/ENCFF093NZJ/@@download/ENCFF093NZJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VTP bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEB 2035791 Michael Snyder, Stanford ce086a6619e11d046da016877e73975d https://www.encodeproject.org/files/ENCFF000VTP/@@download/ENCFF000VTP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VTR bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VUO 344442464 Michael Snyder, Stanford 3a30d22938d5e825afa7ec25258c09cf https://www.encodeproject.org/files/ENCFF000VTR/@@download/ENCFF000VTR.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VTS bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VUP 443770965 Michael Snyder, Stanford 910c252082a3fd517f0ffeb0a36d80ea https://www.encodeproject.org/files/ENCFF000VTS/@@download/ENCFF000VTS.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VTT bigWig signal ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 326841545 Michael Snyder, Stanford 9d57ab69f93dd795e314cd55476f33b1 https://www.encodeproject.org/files/ENCFF000VTT/@@download/ENCFF000VTT.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF000VUO fastq reads ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 611592240 Michael Snyder, Stanford a3c38351ad431182db27f5cecff6e34c https://www.encodeproject.org/files/ENCFF000VUO/@@download/ENCFF000VUO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VUP fastq reads ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 781482460 Michael Snyder, Stanford 68d8fbe993500addb9d205f34bdb90ca https://www.encodeproject.org/files/ENCFF000VUP/@@download/ENCFF000VUP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF001VEB bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 816475 Michael Snyder, Stanford 740448683a57cfc71475d5c19b6e85da https://www.encodeproject.org/files/ENCFF001VEB/@@download/ENCFF001VEB.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF002COO bed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 390735 ENCODE Consortium Analysis Working Group 3a4c289605de5b058f668f79ac5b6204 https://www.encodeproject.org/files/ENCFF002COO/@@download/ENCFF002COO.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF088OFU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COO 1012978 ENCODE Consortium 19771de9e4196cd693b4284c3a42b2a5 https://www.encodeproject.org/files/ENCFF088OFU/@@download/ENCFF088OFU.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF354UXE bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF643CGH 693604865 ENCODE Processing Pipeline e72b468467d0d720e7d6165f2aca077a https://www.encodeproject.org/files/ENCFF354UXE/@@download/ENCFF354UXE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF201PVR bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF643CGH 867953379 ENCODE Processing Pipeline 47b8f39ed234196f07b1e5bd0fb8797c https://www.encodeproject.org/files/ENCFF201PVR/@@download/ENCFF201PVR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF055UMJ bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF643CGH 560825464 ENCODE Processing Pipeline e866a3e4278e9ced5c2c89446f982e84 https://www.encodeproject.org/files/ENCFF055UMJ/@@download/ENCFF055UMJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF188RRJ bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF643CGH 437362610 ENCODE Processing Pipeline 335f6482fdbcd5e9c566d4dbadd7d39f https://www.encodeproject.org/files/ENCFF188RRJ/@@download/ENCFF188RRJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF682RBP bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF807MUK 691151303 ENCODE Processing Pipeline de6acbef880d51ec66742155b2547313 https://www.encodeproject.org/files/ENCFF682RBP/@@download/ENCFF682RBP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF760ZDH bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF807MUK 436549858 ENCODE Processing Pipeline 6be1f13593df3e79895c8ee5c24fd161 https://www.encodeproject.org/files/ENCFF760ZDH/@@download/ENCFF760ZDH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF166KHW bam unfiltered alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF807MUK 864823720 ENCODE Processing Pipeline 5c8865e3bf084386967273b69f5e2ddb https://www.encodeproject.org/files/ENCFF166KHW/@@download/ENCFF166KHW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF450UXL bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF807MUK 560438095 ENCODE Processing Pipeline 4d614498d792ce60254f058d49f2750f https://www.encodeproject.org/files/ENCFF450UXL/@@download/ENCFF450UXL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF277VNV bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 175656228 ENCODE Processing Pipeline 708a5ed34bbaf2e07115d57934120b34 https://www.encodeproject.org/files/ENCFF277VNV/@@download/ENCFF277VNV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF779XER bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 4742342 ENCODE Processing Pipeline 8889ed38c32f4cb12f7fe11118d5c60f https://www.encodeproject.org/files/ENCFF779XER/@@download/ENCFF779XER.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF532JZR bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF289WNM 9591584 ENCODE Processing Pipeline eb8fd08d9312e4e3f8749f89a44b9039 https://www.encodeproject.org/files/ENCFF532JZR/@@download/ENCFF532JZR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF848RCO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF712GLE 641008 ENCODE Processing Pipeline e9f260028925e4d73a9acf4f02ad8a3b https://www.encodeproject.org/files/ENCFF848RCO/@@download/ENCFF848RCO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF569MNZ bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 164816743 ENCODE Processing Pipeline a4a4f69c94d95324c7e48c2c7a95ab32 https://www.encodeproject.org/files/ENCFF569MNZ/@@download/ENCFF569MNZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF636KPQ bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF346VHH 12965402 ENCODE Processing Pipeline 2b2260cc54e1eb68fe81f2752a353b65 https://www.encodeproject.org/files/ENCFF636KPQ/@@download/ENCFF636KPQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF225LRZ bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 78716583 ENCODE Processing Pipeline bcf12e508e77edef5218c95f7fd00ed7 https://www.encodeproject.org/files/ENCFF225LRZ/@@download/ENCFF225LRZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF289WNM bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 4083917 ENCODE Processing Pipeline f6becf07c7072d721a616f82d8828bd6 https://www.encodeproject.org/files/ENCFF289WNM/@@download/ENCFF289WNM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF346VHH bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO, ENCFF760ZDH 5087835 ENCODE Processing Pipeline d7ffc7c25cc8a516a8ac6702053932a6 https://www.encodeproject.org/files/ENCFF346VHH/@@download/ENCFF346VHH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF712GLE bed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF289WNM, ENCFF346VHH, ENCFF779XER 295908 ENCODE Processing Pipeline 0830d755f4ca94b216c9c4277888ad5a https://www.encodeproject.org/files/ENCFF712GLE/@@download/ENCFF712GLE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF036YDI bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 265824928 ENCODE Processing Pipeline 3e5a71c45b54559f5d4fd476e4c83755 https://www.encodeproject.org/files/ENCFF036YDI/@@download/ENCFF036YDI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF741EXE bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO, ENCFF760ZDH 182082155 ENCODE Processing Pipeline cfe7116c99b3a9a49ea3704c11b833a3 https://www.encodeproject.org/files/ENCFF741EXE/@@download/ENCFF741EXE.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF963XEI bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO, ENCFF760ZDH 415289512 ENCODE Processing Pipeline 39c81c99b8fcfedd8645093e8a2abb6e https://www.encodeproject.org/files/ENCFF963XEI/@@download/ENCFF963XEI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF535CWX bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF779XER 10490788 ENCODE Processing Pipeline e778d02f0abcb693113477ea68e82b6b https://www.encodeproject.org/files/ENCFF535CWX/@@download/ENCFF535CWX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF097GSH bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055UMJ, ENCFF188RRJ, ENCFF477ZKJ, ENCFF710SMS 182127748 ENCODE Processing Pipeline 832f74b2ad4f59977dd73e409f1e780f https://www.encodeproject.org/files/ENCFF097GSH/@@download/ENCFF097GSH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF751RNT bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF188RRJ, ENCFF477ZKJ 79921690 ENCODE Processing Pipeline af8033db9f0e7fb34c1afe7a98307a86 https://www.encodeproject.org/files/ENCFF751RNT/@@download/ENCFF751RNT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF691OYU bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055UMJ, ENCFF477ZKJ, ENCFF710SMS 4745075 ENCODE Processing Pipeline ca4e14cc1854f91ff34e454a6bed3dc9 https://www.encodeproject.org/files/ENCFF691OYU/@@download/ENCFF691OYU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF320KLU bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF188RRJ, ENCFF477ZKJ 4085764 ENCODE Processing Pipeline abe75ddbfe3dac69bac78e65a2b7dc79 https://www.encodeproject.org/files/ENCFF320KLU/@@download/ENCFF320KLU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF546DTO bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF691OYU 10489640 ENCODE Processing Pipeline 041364bf6ee17b76ef15c55d6c621531 https://www.encodeproject.org/files/ENCFF546DTO/@@download/ENCFF546DTO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF649DVU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF546AYN 648678 ENCODE Processing Pipeline d2bd86cdb586752b12849232681ab34c https://www.encodeproject.org/files/ENCFF649DVU/@@download/ENCFF649DVU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF590BFM bigWig signal p-value ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055UMJ, ENCFF477ZKJ, ENCFF710SMS 175667312 ENCODE Processing Pipeline 0cb83c8fc3f23eee37db93b0d0e946f1 https://www.encodeproject.org/files/ENCFF590BFM/@@download/ENCFF590BFM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF268ICD bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055UMJ, ENCFF477ZKJ, ENCFF710SMS 265404242 ENCODE Processing Pipeline bcdda08cab1072d228a86b86bb2b264b https://www.encodeproject.org/files/ENCFF268ICD/@@download/ENCFF268ICD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF543LBW bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF188RRJ, ENCFF477ZKJ 170010366 ENCODE Processing Pipeline 744ddacc7915ee03ce97a5f1211b630d https://www.encodeproject.org/files/ENCFF543LBW/@@download/ENCFF543LBW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF076KIG bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055UMJ, ENCFF188RRJ, ENCFF477ZKJ, ENCFF710SMS 5086973 ENCODE Processing Pipeline 7e09cebd959d89d102a78ae21fde74de https://www.encodeproject.org/files/ENCFF076KIG/@@download/ENCFF076KIG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF546AYN bed narrowPeak optimal idr thresholded peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF076KIG, ENCFF320KLU, ENCFF419RSJ, ENCFF691OYU 301563 ENCODE Processing Pipeline 30928ae9f0f90f5d29c0a05ba8245e3c https://www.encodeproject.org/files/ENCFF546AYN/@@download/ENCFF546AYN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF766HMR bigWig fold change over control ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055UMJ, ENCFF188RRJ, ENCFF477ZKJ, ENCFF710SMS 417287051 ENCODE Processing Pipeline f05cc21171dea9f6916624786724b5e1 https://www.encodeproject.org/files/ENCFF766HMR/@@download/ENCFF766HMR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF533GJQ bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF320KLU 9593712 ENCODE Processing Pipeline 7c51755e5787a23d8eb8be5bdceffbd8 https://www.encodeproject.org/files/ENCFF533GJQ/@@download/ENCFF533GJQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF049SEK bigBed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF076KIG 12966538 ENCODE Processing Pipeline 29b6171dc40ca469036072a8f32be4b6 https://www.encodeproject.org/files/ENCFF049SEK/@@download/ENCFF049SEK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF302XOK fastq reads ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1065073048 Richard Myers, HAIB 0d0073273e0b190f9dc49d5943238338 SRA:SRR5339013 https://www.encodeproject.org/files/ENCFF302XOK/@@download/ENCFF302XOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF500ZBE fastq reads ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 2451222012 Richard Myers, HAIB d991783529600b0044d00c5b3887a46a SRA:SRR5339012 https://www.encodeproject.org/files/ENCFF500ZBE/@@download/ENCFF500ZBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF123QZN/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF149IEV bigWig signal p-value ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF689YYU 781857588 ENCODE Processing Pipeline 0b436db3e05f93963c587e902379eef6 https://www.encodeproject.org/files/ENCFF149IEV/@@download/ENCFF149IEV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF863AIF bigWig fold change over control ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF689YYU 565052758 ENCODE Processing Pipeline 40ae1087ec290f6dd5749e7c27f792de https://www.encodeproject.org/files/ENCFF863AIF/@@download/ENCFF863AIF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF677IWP bam unfiltered alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF302XOK, ENCFF643CGH 1073669279 ENCODE Processing Pipeline 746626417bafe7ecf8f3a5f3781b99ed https://www.encodeproject.org/files/ENCFF677IWP/@@download/ENCFF677IWP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF479OYS bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF302XOK, ENCFF643CGH 775048073 ENCODE Processing Pipeline 228e02bb79f58d8612720e86e2d2b8a2 https://www.encodeproject.org/files/ENCFF479OYS/@@download/ENCFF479OYS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF002OXS bam unfiltered alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF500ZBE, ENCFF643CGH 2515205787 ENCODE Processing Pipeline aa9664fb391b5bbab3154ae5b658ed8d https://www.encodeproject.org/files/ENCFF002OXS/@@download/ENCFF002OXS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF864EDI bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF500ZBE, ENCFF643CGH 1800291274 ENCODE Processing Pipeline 9cd3b255135efbcebd34416af015983a https://www.encodeproject.org/files/ENCFF864EDI/@@download/ENCFF864EDI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF355OWJ bigWig signal p-value ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF479OYS, ENCFF610PNU 841488168 ENCODE Processing Pipeline 236a741e22c3fd603894f2e0446a571c https://www.encodeproject.org/files/ENCFF355OWJ/@@download/ENCFF355OWJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF883GDO bigWig signal p-value ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF337WHA, ENCFF610PNU, ENCFF864EDI 1123744508 ENCODE Processing Pipeline 1f9ea646fd7560a2952c5a4ec19e2814 https://www.encodeproject.org/files/ENCFF883GDO/@@download/ENCFF883GDO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF323HQX bigWig fold change over control ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF479OYS, ENCFF610PNU 563425116 ENCODE Processing Pipeline e880ada6b1046907c8e6fc08fc26922e https://www.encodeproject.org/files/ENCFF323HQX/@@download/ENCFF323HQX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF959JEM bigWig signal p-value ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF337WHA, ENCFF479OYS, ENCFF610PNU, ENCFF864EDI 1265541723 ENCODE Processing Pipeline c6913581fd17935ce124cb95bc7628a9 https://www.encodeproject.org/files/ENCFF959JEM/@@download/ENCFF959JEM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF574JFC bigWig fold change over control ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF337WHA, ENCFF610PNU, ENCFF864EDI 1066121519 ENCODE Processing Pipeline 3c911c4d75238278f66b2485f04fb624 https://www.encodeproject.org/files/ENCFF574JFC/@@download/ENCFF574JFC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF419EMP bigWig fold change over control ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF337WHA, ENCFF479OYS, ENCFF610PNU, ENCFF864EDI 1282952440 ENCODE Processing Pipeline df3a555b33778ca5e293ce9734c04e55 https://www.encodeproject.org/files/ENCFF419EMP/@@download/ENCFF419EMP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF027LSP bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF479OYS, ENCFF610PNU 5979172 ENCODE Processing Pipeline 5814403de402fb66c36d8831573bedd6 https://www.encodeproject.org/files/ENCFF027LSP/@@download/ENCFF027LSP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF892FWF bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF337WHA, ENCFF479OYS, ENCFF610PNU, ENCFF864EDI 6675335 ENCODE Processing Pipeline 1ea9c6d8c89ce35ae2c1a3ec29b69c1f https://www.encodeproject.org/files/ENCFF892FWF/@@download/ENCFF892FWF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF307CSN bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF337WHA, ENCFF610PNU, ENCFF864EDI 6384949 ENCODE Processing Pipeline a34181cfa400624e56dace643d3c5277 https://www.encodeproject.org/files/ENCFF307CSN/@@download/ENCFF307CSN.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF905JAC bed narrowPeak optimal idr thresholded peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF027LSP, ENCFF307CSN, ENCFF419RSJ, ENCFF892FWF 1266306 ENCODE Processing Pipeline 023554e312653b4314e473239bbe8dc7 https://www.encodeproject.org/files/ENCFF905JAC/@@download/ENCFF905JAC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF624DNS bigBed narrowPeak optimal idr thresholded peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF905JAC 2293868 ENCODE Processing Pipeline 8fab22680eebfecd416b9d89142c7646 https://www.encodeproject.org/files/ENCFF624DNS/@@download/ENCFF624DNS.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF678KAD bigBed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF892FWF 13826222 ENCODE Processing Pipeline a11881b995137661d17f0e7f32717a76 https://www.encodeproject.org/files/ENCFF678KAD/@@download/ENCFF678KAD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF684UQP bigBed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF027LSP 13377080 ENCODE Processing Pipeline d809c7f5fbf5674ae5869ca069f1858f https://www.encodeproject.org/files/ENCFF684UQP/@@download/ENCFF684UQP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF222OGB bigBed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF307CSN 13789633 ENCODE Processing Pipeline edced8a460951a444f4babc4c28decb6 https://www.encodeproject.org/files/ENCFF222OGB/@@download/ENCFF222OGB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF102LQR bam unfiltered alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF302XOK, ENCFF807MUK 1070074733 ENCODE Processing Pipeline e5af964d5981031e8254867919637212 https://www.encodeproject.org/files/ENCFF102LQR/@@download/ENCFF102LQR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF689YYU bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF302XOK, ENCFF807MUK 775248669 ENCODE Processing Pipeline 6421c4ffd3327df3608bb8f8e2aeaf1e https://www.encodeproject.org/files/ENCFF689YYU/@@download/ENCFF689YYU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF014GDD bam unfiltered alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF500ZBE, ENCFF807MUK 2503850416 ENCODE Processing Pipeline 88b8e6ae836f5231d9fcc9c93a68927b https://www.encodeproject.org/files/ENCFF014GDD/@@download/ENCFF014GDD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF295XEM bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF500ZBE, ENCFF807MUK 1800239622 ENCODE Processing Pipeline bc38c210846c98df14e31ed8b66819a6 https://www.encodeproject.org/files/ENCFF295XEM/@@download/ENCFF295XEM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF611JQN bigWig signal p-value ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV 1145057349 ENCODE Processing Pipeline 452715e31a3c8301171ce339fa052921 https://www.encodeproject.org/files/ENCFF611JQN/@@download/ENCFF611JQN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF561NYC bigWig fold change over control ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV 1028817929 ENCODE Processing Pipeline 926b80db8263de8ab3162edbc60b6ea6 https://www.encodeproject.org/files/ENCFF561NYC/@@download/ENCFF561NYC.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF280GOT bigWig signal p-value ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV, ENCFF689YYU 1264836462 ENCODE Processing Pipeline 973a617ec9a5e2870496de1201196565 https://www.encodeproject.org/files/ENCFF280GOT/@@download/ENCFF280GOT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF022XIX bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV 6385906 ENCODE Processing Pipeline 408cc21c088095523b2496686055c974 https://www.encodeproject.org/files/ENCFF022XIX/@@download/ENCFF022XIX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF105WKB bigBed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF240XXW 13807639 ENCODE Processing Pipeline 5febc2806e7658774673c5f67e53c74e https://www.encodeproject.org/files/ENCFF105WKB/@@download/ENCFF105WKB.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF957ICB bed narrowPeak conservative idr thresholded peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF022XIX, ENCFF240XXW, ENCFF839MCU 1263017 ENCODE Processing Pipeline 840dc2afdac5b08153d01809a52a89bb https://www.encodeproject.org/files/ENCFF957ICB/@@download/ENCFF957ICB.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF053HXL bigBed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF839MCU 13365966 ENCODE Processing Pipeline caee1a96ffb18853168a0f8389ee7ad7 https://www.encodeproject.org/files/ENCFF053HXL/@@download/ENCFF053HXL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF713MCF bed narrowPeak optimal idr thresholded peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF022XIX, ENCFF240XXW, ENCFF839MCU 1254968 ENCODE Processing Pipeline 2054296572380b63d6dedec1cf356f04 https://www.encodeproject.org/files/ENCFF713MCF/@@download/ENCFF713MCF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF240XXW bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV, ENCFF689YYU 6667890 ENCODE Processing Pipeline 65283874771ddb453e822654f77af35f https://www.encodeproject.org/files/ENCFF240XXW/@@download/ENCFF240XXW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF294LYA bigBed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF022XIX 13784781 ENCODE Processing Pipeline 73d3de2e688a7ab78b262dbdcd8587f3 https://www.encodeproject.org/files/ENCFF294LYA/@@download/ENCFF294LYA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF818TPI bigWig fold change over control ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV, ENCFF689YYU 1285039209 ENCODE Processing Pipeline b0f35b35360d87b4bbbb2f8b9a0df791 https://www.encodeproject.org/files/ENCFF818TPI/@@download/ENCFF818TPI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF839MCU bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF689YYU 5980828 ENCODE Processing Pipeline c861ae9a61a819a72c11b296796dff7a https://www.encodeproject.org/files/ENCFF839MCU/@@download/ENCFF839MCU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF388ALA bigBed narrowPeak optimal idr thresholded peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF713MCF 2272655 ENCODE Processing Pipeline 8988961c1d2d44ef4b18dcc017632a83 https://www.encodeproject.org/files/ENCFF388ALA/@@download/ENCFF388ALA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF952CYX bigBed narrowPeak conservative idr thresholded peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF957ICB 2286608 ENCODE Processing Pipeline 5d79a2f51dd92915ef9715fadc032b1f https://www.encodeproject.org/files/ENCFF952CYX/@@download/ENCFF952CYX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF672AOW fastq reads ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF401OZY 3312602558 Michael Snyder, Stanford b92b30e1cce4d155363ede7bf396ea15 SRA:SRR5111481 https://www.encodeproject.org/files/ENCFF672AOW/@@download/ENCFF672AOW.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking ENCFF401OZY fastq reads ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF672AOW 3015829725 Michael Snyder, Stanford 8993b1e8ac032bc41e4dbd6202f7b4ba SRA:SRR5111481 https://www.encodeproject.org/files/ENCFF401OZY/@@download/ENCFF401OZY.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking ENCFF990RFH fastq reads ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF841YFZ 3289695911 Michael Snyder, Stanford 7daaa0b1ec95df144715d5cd491b0193 https://www.encodeproject.org/files/ENCFF990RFH/@@download/ENCFF990RFH.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ archived mild to moderate bottlenecking ENCFF841YFZ fastq reads ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF990RFH 3546946340 Michael Snyder, Stanford 8a3d796a255dc7a09f958a10f5c8b9d8 https://www.encodeproject.org/files/ENCFF841YFZ/@@download/ENCFF841YFZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ archived mild to moderate bottlenecking ENCFF761NME fastq reads ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF468WZY 4603423709 Michael Snyder, Stanford 2f9eb4990be42ee364cf735bdc688aad SRA:SRR5111482 https://www.encodeproject.org/files/ENCFF761NME/@@download/ENCFF761NME.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking ENCFF468WZY fastq reads ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF761NME 5059262692 Michael Snyder, Stanford 257c367cd19e0972dce59db03d79e629 SRA:SRR5111482 https://www.encodeproject.org/files/ENCFF468WZY/@@download/ENCFF468WZY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking ENCFF636WSC bam unfiltered alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 100 ENCFF401OZY, ENCFF672AOW, ENCFF807MUK 6174503432 ENCODE Processing Pipeline 2804e850fa5b8d425b209d0e3c6cefdf https://www.encodeproject.org/files/ENCFF636WSC/@@download/ENCFF636WSC.bam hg19 released mild to moderate bottlenecking ENCFF481IBV bam unfiltered alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 100 ENCFF468WZY, ENCFF761NME, ENCFF807MUK 8859584962 ENCODE Processing Pipeline 278607eaf79a85cf17e4e155a01f427e https://www.encodeproject.org/files/ENCFF481IBV/@@download/ENCFF481IBV.bam hg19 released mild to moderate bottlenecking ENCFF984QQT bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 100 ENCFF401OZY, ENCFF672AOW, ENCFF807MUK 4375593099 ENCODE Processing Pipeline a4bef7688ce02d095e1ceefc39630fd5 https://www.encodeproject.org/files/ENCFF984QQT/@@download/ENCFF984QQT.bam hg19 released mild to moderate bottlenecking ENCFF295PZT bam unfiltered alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 100 ENCFF401OZY, ENCFF643CGH, ENCFF672AOW 6180411501 ENCODE Processing Pipeline dafe739d9be830519b4b32d3d79702d8 https://www.encodeproject.org/files/ENCFF295PZT/@@download/ENCFF295PZT.bam GRCh38 released mild to moderate bottlenecking ENCFF042LKP bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 100 ENCFF401OZY, ENCFF643CGH, ENCFF672AOW 4378809873 ENCODE Processing Pipeline 57d945f4331fc823ee0c8e4305667547 https://www.encodeproject.org/files/ENCFF042LKP/@@download/ENCFF042LKP.bam GRCh38 released mild to moderate bottlenecking ENCFF892UVF bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 100 ENCFF468WZY, ENCFF761NME, ENCFF807MUK 6339932850 ENCODE Processing Pipeline 402e3d4e4607caa0fcf1104a44f1c271 https://www.encodeproject.org/files/ENCFF892UVF/@@download/ENCFF892UVF.bam hg19 released mild to moderate bottlenecking ENCFF342FIU bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 100 ENCFF468WZY, ENCFF643CGH, ENCFF761NME 6345095790 ENCODE Processing Pipeline 911ebfa1cb40934774919619412ac2a5 https://www.encodeproject.org/files/ENCFF342FIU/@@download/ENCFF342FIU.bam GRCh38 released mild to moderate bottlenecking ENCFF297IPL bam unfiltered alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 100 ENCFF468WZY, ENCFF643CGH, ENCFF761NME 8866433154 ENCODE Processing Pipeline e33fa6cedf6265f8481e803eaeb807a2 https://www.encodeproject.org/files/ENCFF297IPL/@@download/ENCFF297IPL.bam GRCh38 released mild to moderate bottlenecking ENCFF167AFM bigWig signal p-value ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF 1765464066 ENCODE Processing Pipeline 3f864bb2f0dca5febbb1d06e7721a7b0 https://www.encodeproject.org/files/ENCFF167AFM/@@download/ENCFF167AFM.bigWig hg19 released mild to moderate bottlenecking ENCFF490XLD bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF834TUP, ENCFF984QQT 7111483 ENCODE Processing Pipeline 5c956902a94641b04b8a3f59bc08f2c6 https://www.encodeproject.org/files/ENCFF490XLD/@@download/ENCFF490XLD.bed.gz hg19 released mild to moderate bottlenecking ENCFF499UMV bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF, ENCFF984QQT 7313485 ENCODE Processing Pipeline 2541b212e7722e9bc107563074d7984d https://www.encodeproject.org/files/ENCFF499UMV/@@download/ENCFF499UMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF569IJM bed narrowPeak conservative idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF331TXU, ENCFF490XLD, ENCFF499UMV 527405 ENCODE Processing Pipeline 64a4dc051bfe39d8ba6a9ea9e1f9cdea https://www.encodeproject.org/files/ENCFF569IJM/@@download/ENCFF569IJM.bed.gz hg19 released mild to moderate bottlenecking ENCFF739HXS bigWig signal p-value ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF, ENCFF984QQT 2457968329 ENCODE Processing Pipeline 25689a74f00f921f26bed3e92b53632c https://www.encodeproject.org/files/ENCFF739HXS/@@download/ENCFF739HXS.bigWig hg19 released mild to moderate bottlenecking ENCFF331TXU bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF 7232667 ENCODE Processing Pipeline b34b2ecd91e077a9bf871828610a093d https://www.encodeproject.org/files/ENCFF331TXU/@@download/ENCFF331TXU.bed.gz hg19 released mild to moderate bottlenecking ENCFF838COI bed narrowPeak optimal idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF331TXU, ENCFF490XLD, ENCFF499UMV 629731 ENCODE Processing Pipeline 29b3f9c5729c3aa115f9cfa92da97076 https://www.encodeproject.org/files/ENCFF838COI/@@download/ENCFF838COI.bed.gz hg19 released mild to moderate bottlenecking ENCFF006AWO bigWig signal p-value ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF834TUP, ENCFF984QQT 1107530709 ENCODE Processing Pipeline b5547647f29061702c085d9bf39af229 https://www.encodeproject.org/files/ENCFF006AWO/@@download/ENCFF006AWO.bigWig hg19 released mild to moderate bottlenecking ENCFF907SYV bigWig fold change over control ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF 2183604916 ENCODE Processing Pipeline a3a850ad6e6d174a2c351d8da4112ff1 https://www.encodeproject.org/files/ENCFF907SYV/@@download/ENCFF907SYV.bigWig hg19 released mild to moderate bottlenecking ENCFF696CXY bigWig fold change over control ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF834TUP, ENCFF984QQT 1395537159 ENCODE Processing Pipeline d2bff5ec4c4abd2dda9a177b0662de1b https://www.encodeproject.org/files/ENCFF696CXY/@@download/ENCFF696CXY.bigWig hg19 released mild to moderate bottlenecking ENCFF464DQL bigBed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF331TXU 13257089 ENCODE Processing Pipeline 806394f1893425ff9abf4cd400603664 https://www.encodeproject.org/files/ENCFF464DQL/@@download/ENCFF464DQL.bigBed hg19 released mild to moderate bottlenecking ENCFF104XMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF569IJM 1025513 ENCODE Processing Pipeline 52f84f240de1b2e00d703b185db3faf4 https://www.encodeproject.org/files/ENCFF104XMQ/@@download/ENCFF104XMQ.bigBed hg19 released mild to moderate bottlenecking ENCFF875GPV bigBed narrowPeak optimal idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF838COI 1177306 ENCODE Processing Pipeline d483f9e9a54e285a1efb3ec6a4a69cab https://www.encodeproject.org/files/ENCFF875GPV/@@download/ENCFF875GPV.bigBed hg19 released mild to moderate bottlenecking ENCFF758MEL bigWig fold change over control ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF, ENCFF984QQT 2631676384 ENCODE Processing Pipeline 71e50477660b13fe10415707784dbebc https://www.encodeproject.org/files/ENCFF758MEL/@@download/ENCFF758MEL.bigWig hg19 released mild to moderate bottlenecking ENCFF820CFK bigBed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF490XLD 13186420 ENCODE Processing Pipeline cff1fdadcb589f774fc701e1022e8626 https://www.encodeproject.org/files/ENCFF820CFK/@@download/ENCFF820CFK.bigBed hg19 released mild to moderate bottlenecking ENCFF984LXO bigBed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF499UMV 13238913 ENCODE Processing Pipeline c5897dbe5e101442d52c99e2c4dac2de https://www.encodeproject.org/files/ENCFF984LXO/@@download/ENCFF984LXO.bigBed hg19 released mild to moderate bottlenecking ENCFF206FNB bigWig signal p-value ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF342FIU, ENCFF712WXB, ENCFF790TAN 1747216905 ENCODE Processing Pipeline 2f4057f318d1b40f9ab0fd95d6e0fa4b https://www.encodeproject.org/files/ENCFF206FNB/@@download/ENCFF206FNB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF370GFF bigWig signal p-value ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF042LKP, ENCFF712WXB 1317049596 ENCODE Processing Pipeline 184a8cb77afd3b4692b6a66f1a71ff25 https://www.encodeproject.org/files/ENCFF370GFF/@@download/ENCFF370GFF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF488YBA bigBed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF457ZDJ 13265773 ENCODE Processing Pipeline 1c22d4f41659e8b2c0e2ed8dda6e7aea https://www.encodeproject.org/files/ENCFF488YBA/@@download/ENCFF488YBA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF318KHB bigWig signal p-value ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF042LKP, ENCFF342FIU, ENCFF712WXB, ENCFF790TAN 2442533760 ENCODE Processing Pipeline 3f339f48a75a3bd4bf5487c346d6d12a https://www.encodeproject.org/files/ENCFF318KHB/@@download/ENCFF318KHB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF813KRB bigWig fold change over control ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF042LKP, ENCFF712WXB 1403308383 ENCODE Processing Pipeline fa51532f8673594e6a0f706487d4f823 https://www.encodeproject.org/files/ENCFF813KRB/@@download/ENCFF813KRB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF044BRX bigWig fold change over control ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF342FIU, ENCFF712WXB, ENCFF790TAN 2206639357 ENCODE Processing Pipeline 72443dc31c44ec52b35f6428924faf8c https://www.encodeproject.org/files/ENCFF044BRX/@@download/ENCFF044BRX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF959AJT bigBed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF858BKR 13250791 ENCODE Processing Pipeline 60dc811c4cb27e0aa7ca2539049c05d8 https://www.encodeproject.org/files/ENCFF959AJT/@@download/ENCFF959AJT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF097GPW bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF042LKP, ENCFF712WXB 7107412 ENCODE Processing Pipeline 7727f571f33ee47561150d6c024a6f74 https://www.encodeproject.org/files/ENCFF097GPW/@@download/ENCFF097GPW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF468FXH bigBed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF097GPW 13188869 ENCODE Processing Pipeline ccdc9af5129b9e89665d7bf44f6b5964 https://www.encodeproject.org/files/ENCFF468FXH/@@download/ENCFF468FXH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF644QKE bigBed narrowPeak conservative idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF493NZN 1027204 ENCODE Processing Pipeline 4f9942a0d04f03fb4b6000a76da2bf01 https://www.encodeproject.org/files/ENCFF644QKE/@@download/ENCFF644QKE.bigBed GRCh38 released mild to moderate bottlenecking ENCFF483BRD bed narrowPeak optimal idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF097GPW, ENCFF419RSJ, ENCFF457ZDJ, ENCFF858BKR 623757 ENCODE Processing Pipeline 3424efdcc9ed08c70164c9d973284841 https://www.encodeproject.org/files/ENCFF483BRD/@@download/ENCFF483BRD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF215RBZ bigBed narrowPeak optimal idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF483BRD 1170281 ENCODE Processing Pipeline 9078ff924713d1e6ef8ca7d8005ce61c https://www.encodeproject.org/files/ENCFF215RBZ/@@download/ENCFF215RBZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF818OZI bigWig fold change over control ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF042LKP, ENCFF342FIU, ENCFF712WXB, ENCFF790TAN 2619607346 ENCODE Processing Pipeline 46708998a46e00ab62038bc211ba49f3 https://www.encodeproject.org/files/ENCFF818OZI/@@download/ENCFF818OZI.bigWig GRCh38 released mild to moderate bottlenecking ENCFF858BKR bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF042LKP, ENCFF342FIU, ENCFF712WXB, ENCFF790TAN 7317511 ENCODE Processing Pipeline 6587766178988746a43b2357c305861b https://www.encodeproject.org/files/ENCFF858BKR/@@download/ENCFF858BKR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF493NZN bed narrowPeak conservative idr thresholded peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF097GPW, ENCFF419RSJ, ENCFF457ZDJ, ENCFF858BKR 526774 ENCODE Processing Pipeline d6d3227605f8463b5d30f81339ea1c32 https://www.encodeproject.org/files/ENCFF493NZN/@@download/ENCFF493NZN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF457ZDJ bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF342FIU, ENCFF712WXB, ENCFF790TAN 7235079 ENCODE Processing Pipeline 9ccb995acfc2783cc2b1dc7cb8f61abb https://www.encodeproject.org/files/ENCFF457ZDJ/@@download/ENCFF457ZDJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF215GBK fastq reads ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1493293232 Richard Myers, HAIB d2232567756c2048451152b4265b49a0 SRA:SRR5339369 https://www.encodeproject.org/files/ENCFF215GBK/@@download/ENCFF215GBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF977SGP/ released antibody characterized with exemption biological replicates with identical biosample ENCFF978CPC fastq reads ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1180863799 Richard Myers, HAIB 456a301689a6ccee976b010487481eab SRA:SRR5339368 https://www.encodeproject.org/files/ENCFF978CPC/@@download/ENCFF978CPC.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample ENCFF695SMU bam unfiltered alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF215GBK, ENCFF643CGH 1653505324 ENCODE Processing Pipeline 7116c9e626a8e9f9ba4e7ed49915e804 https://www.encodeproject.org/files/ENCFF695SMU/@@download/ENCFF695SMU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF804TUA bam unfiltered alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF978CPC 1297974956 ENCODE Processing Pipeline b5cb2dfcb0498e96197287d236b17863 https://www.encodeproject.org/files/ENCFF804TUA/@@download/ENCFF804TUA.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF641PXS bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF215GBK, ENCFF643CGH 1224715512 ENCODE Processing Pipeline 40d525eb5a980df9b6ec9ead766697e2 https://www.encodeproject.org/files/ENCFF641PXS/@@download/ENCFF641PXS.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF861AOO bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF978CPC 938148959 ENCODE Processing Pipeline aad6da83dac2d56ad08a6671ed161c2b https://www.encodeproject.org/files/ENCFF861AOO/@@download/ENCFF861AOO.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF679FST bigWig signal p-value ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF610PNU, ENCFF641PXS 838995913 ENCODE Processing Pipeline 00f14070a2d762500168a5b4799f0612 https://www.encodeproject.org/files/ENCFF679FST/@@download/ENCFF679FST.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF938JFI bigWig signal p-value ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF861AOO 568199722 ENCODE Processing Pipeline 20f149477a261cc2d2424dcf0e91e4d0 https://www.encodeproject.org/files/ENCFF938JFI/@@download/ENCFF938JFI.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF574WZA bigWig signal p-value ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200YPH, ENCFF610PNU, ENCFF641PXS, ENCFF861AOO 1075621365 ENCODE Processing Pipeline de3ab223a400111f954b4c8c86e8649b https://www.encodeproject.org/files/ENCFF574WZA/@@download/ENCFF574WZA.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF224WNN bigBed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF591BNO 13467909 ENCODE Processing Pipeline d75031460d9d57f819f9ec6e0947be91 https://www.encodeproject.org/files/ENCFF224WNN/@@download/ENCFF224WNN.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF329IOJ bigWig fold change over control ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF610PNU, ENCFF641PXS 887751880 ENCODE Processing Pipeline 86c1dd9379cf2fc6accbfb1a0d13d669 https://www.encodeproject.org/files/ENCFF329IOJ/@@download/ENCFF329IOJ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF928WPG bigWig fold change over control ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200YPH, ENCFF610PNU, ENCFF641PXS, ENCFF861AOO 1215730985 ENCODE Processing Pipeline 5ebfc3efd6e0658c9506e23c85c9db73 https://www.encodeproject.org/files/ENCFF928WPG/@@download/ENCFF928WPG.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF488NTO bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF861AOO 5127385 ENCODE Processing Pipeline 48038210276b3166c0b53d31278481f4 https://www.encodeproject.org/files/ENCFF488NTO/@@download/ENCFF488NTO.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF678BEB bigWig fold change over control ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF861AOO 511095941 ENCODE Processing Pipeline e35a5d89b6327c9056cf8dfc1f6359ee https://www.encodeproject.org/files/ENCFF678BEB/@@download/ENCFF678BEB.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF591BNO bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF610PNU, ENCFF641PXS 6306677 ENCODE Processing Pipeline 6cb3299d8c171dc0610728bdc44c0f72 https://www.encodeproject.org/files/ENCFF591BNO/@@download/ENCFF591BNO.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF054GYB bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200YPH, ENCFF610PNU, ENCFF641PXS, ENCFF861AOO 6687352 ENCODE Processing Pipeline 472e6111c90b00487ba8324d90061459 https://www.encodeproject.org/files/ENCFF054GYB/@@download/ENCFF054GYB.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF074JOP bigBed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF488NTO 11196226 ENCODE Processing Pipeline 9911b190a67b721f0eab6a489f23aae1 https://www.encodeproject.org/files/ENCFF074JOP/@@download/ENCFF074JOP.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF172IAS bed narrowPeak conservative idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF054GYB, ENCFF419RSJ, ENCFF488NTO, ENCFF591BNO 580581 ENCODE Processing Pipeline a85b6b4aa427577e342410fd4e07fefc https://www.encodeproject.org/files/ENCFF172IAS/@@download/ENCFF172IAS.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF216VCA bigBed narrowPeak conservative idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF172IAS 1143372 ENCODE Processing Pipeline 0072f7cf3403a444336a7441b0539ba4 https://www.encodeproject.org/files/ENCFF216VCA/@@download/ENCFF216VCA.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF686GZP bigBed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF054GYB 13532168 ENCODE Processing Pipeline b15d43b89e1caee0943003a2415aaa8a https://www.encodeproject.org/files/ENCFF686GZP/@@download/ENCFF686GZP.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF981HWP bigBed narrowPeak optimal idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF229COM 1215765 ENCODE Processing Pipeline 98fd0c397d7bd875f365e6fbac305b5d https://www.encodeproject.org/files/ENCFF981HWP/@@download/ENCFF981HWP.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF229COM bed narrowPeak optimal idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF054GYB, ENCFF419RSJ, ENCFF488NTO, ENCFF591BNO 626475 ENCODE Processing Pipeline 703e3b942d2c3355b7e351a8aa9d3e97 https://www.encodeproject.org/files/ENCFF229COM/@@download/ENCFF229COM.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF288WBH bam unfiltered alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF978CPC 1291629343 ENCODE Processing Pipeline 412fc780b558b1e74aef29889e5c9394 https://www.encodeproject.org/files/ENCFF288WBH/@@download/ENCFF288WBH.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF515BLD bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF978CPC 938124002 ENCODE Processing Pipeline ab880777a49f7aa488583b991faf236c https://www.encodeproject.org/files/ENCFF515BLD/@@download/ENCFF515BLD.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF263ZVJ bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF215GBK, ENCFF807MUK 1224650875 ENCODE Processing Pipeline 407e3f0980a1a0078c3fab7c41773a33 https://www.encodeproject.org/files/ENCFF263ZVJ/@@download/ENCFF263ZVJ.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF225MVG bam unfiltered alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF215GBK, ENCFF807MUK 1644725735 ENCODE Processing Pipeline 5c064082d38bedc94155c110ec993f2b https://www.encodeproject.org/files/ENCFF225MVG/@@download/ENCFF225MVG.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF275BLS bigWig signal p-value ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV 971221336 ENCODE Processing Pipeline 0c5e6996f1d8e1077a33a5231fb78835 https://www.encodeproject.org/files/ENCFF275BLS/@@download/ENCFF275BLS.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF373EUK bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV 6321057 ENCODE Processing Pipeline b2742acb42d3e4e5a9501075875e1a85 https://www.encodeproject.org/files/ENCFF373EUK/@@download/ENCFF373EUK.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF027ZUW bigWig signal p-value ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV, ENCFF515BLD 988084287 ENCODE Processing Pipeline 0f490c82acd7aaacc305f35af6ae63bc https://www.encodeproject.org/files/ENCFF027ZUW/@@download/ENCFF027ZUW.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF436DJC bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF515BLD 5199549 ENCODE Processing Pipeline 8f0a59206a2ac5618bb18337dfae2e7b https://www.encodeproject.org/files/ENCFF436DJC/@@download/ENCFF436DJC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF301CFJ bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV, ENCFF515BLD 6675053 ENCODE Processing Pipeline bf988957eb9ee5594bd0a4dca852accb https://www.encodeproject.org/files/ENCFF301CFJ/@@download/ENCFF301CFJ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF376OQW bigBed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF301CFJ 13509782 ENCODE Processing Pipeline 3969b55815df3b776083da6dfb2967c3 https://www.encodeproject.org/files/ENCFF376OQW/@@download/ENCFF376OQW.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF449HIL bigWig signal p-value ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF515BLD 587657120 ENCODE Processing Pipeline 6f99dba52740639127cfb406634f0837 https://www.encodeproject.org/files/ENCFF449HIL/@@download/ENCFF449HIL.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF108DKL bigWig fold change over control ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV 902748972 ENCODE Processing Pipeline 4a30e3924f793ff36673a165bf1ce042 https://www.encodeproject.org/files/ENCFF108DKL/@@download/ENCFF108DKL.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF090FNP bigBed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF373EUK 13431490 ENCODE Processing Pipeline 1224b09bdd4aa531391cbc88a42cf76e https://www.encodeproject.org/files/ENCFF090FNP/@@download/ENCFF090FNP.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF948RGJ bigBed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF436DJC 11197485 ENCODE Processing Pipeline fd36a07e16bd0034f896eb3c5ba28eda https://www.encodeproject.org/files/ENCFF948RGJ/@@download/ENCFF948RGJ.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF133FXT bed narrowPeak conservative idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF301CFJ, ENCFF373EUK, ENCFF436DJC 576124 ENCODE Processing Pipeline a294d767729247e006542b00ece7d91a https://www.encodeproject.org/files/ENCFF133FXT/@@download/ENCFF133FXT.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF413EJE bigBed narrowPeak conservative idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF133FXT 1135402 ENCODE Processing Pipeline bc126a0f60a42c23b71efe4afc8d8027 https://www.encodeproject.org/files/ENCFF413EJE/@@download/ENCFF413EJE.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF804UDG bed narrowPeak optimal idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF301CFJ, ENCFF373EUK, ENCFF436DJC 621826 ENCODE Processing Pipeline 4831345a4a86188eac653f2ee5b01725 https://www.encodeproject.org/files/ENCFF804UDG/@@download/ENCFF804UDG.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF039IEL bigBed narrowPeak optimal idr thresholded peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF804UDG 1205263 ENCODE Processing Pipeline b448fbd339acacb7f1c091ec40ee21f8 https://www.encodeproject.org/files/ENCFF039IEL/@@download/ENCFF039IEL.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF031TMJ bigWig fold change over control ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF515BLD 505233917 ENCODE Processing Pipeline 86c5f22dbfb0ba8282d830e1d9fad161 https://www.encodeproject.org/files/ENCFF031TMJ/@@download/ENCFF031TMJ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF303OKE bigWig fold change over control ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV, ENCFF515BLD 1207838945 ENCODE Processing Pipeline 5e2621bdc4397605a401580e7c9928c4 https://www.encodeproject.org/files/ENCFF303OKE/@@download/ENCFF303OKE.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF000BEB bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000BEL 928651798 Bradley Bernstein, Broad edf2b71524e34bb1a6fd14b383d81db1 https://www.encodeproject.org/files/ENCFF000BEB/@@download/ENCFF000BEB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BEC bigBed broadPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SWG 2228625 Bradley Bernstein, Broad bd873706c68587942e8cb9041526ae6d https://www.encodeproject.org/files/ENCFF000BEC/@@download/ENCFF000BEC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BEE bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000BEQ 2177038810 Bradley Bernstein, Broad 490110ea23fcd5fe8d8073e593367163 https://www.encodeproject.org/files/ENCFF000BEE/@@download/ENCFF000BEE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BEF bigWig signal ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 529343799 Bradley Bernstein, Broad 5c8b16b164d95979f35c361724916c91 https://www.encodeproject.org/files/ENCFF000BEF/@@download/ENCFF000BEF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from ENCFF000BEL fastq reads ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 937983861 Bradley Bernstein, Broad 1f9efc23ed4987fba46905bc71542a9e https://www.encodeproject.org/files/ENCFF000BEL/@@download/ENCFF000BEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, moderate library complexity ENCFF000BEQ fastq reads ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 2147153685 Bradley Bernstein, Broad 085a5864475d7b08c71b665d1c35901c https://www.encodeproject.org/files/ENCFF000BEQ/@@download/ENCFF000BEQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001SWG bed broadPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1230411 Bradley Bernstein, Broad 54d856ea8855e9507b93b54590ef7974 https://www.encodeproject.org/files/ENCFF001SWG/@@download/ENCFF001SWG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from ENCFF002CEA bed narrowPeak optimal idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 86666 ENCODE Consortium Analysis Working Group 40f6649223742480c7730318309b7323 https://www.encodeproject.org/files/ENCFF002CEA/@@download/ENCFF002CEA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from ENCFF241WTL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEA 275846 ENCODE Consortium f0b642005e9cc36e2665767945eecbe0 https://www.encodeproject.org/files/ENCFF241WTL/@@download/ENCFF241WTL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF586GBV bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BEL, ENCFF643CGH 656966288 ENCODE Processing Pipeline db725a686f834e3e6133953e266a8744 https://www.encodeproject.org/files/ENCFF586GBV/@@download/ENCFF586GBV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF982KPD bam unfiltered alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BEL, ENCFF643CGH 1156036550 ENCODE Processing Pipeline ec3e3ca56d1673c53cd735c5bbe74a72 https://www.encodeproject.org/files/ENCFF982KPD/@@download/ENCFF982KPD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF051ILA bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BEQ, ENCFF643CGH 1783414655 ENCODE Processing Pipeline 0ae49028ad5f5a96a5d0683662a2274e https://www.encodeproject.org/files/ENCFF051ILA/@@download/ENCFF051ILA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF723QHK bam unfiltered alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BEQ, ENCFF643CGH 2686531281 ENCODE Processing Pipeline afac9eb71e54b30fc242be4a019a8242 https://www.encodeproject.org/files/ENCFF723QHK/@@download/ENCFF723QHK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF545PYA bam unfiltered alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BEL, ENCFF807MUK 1151253332 ENCODE Processing Pipeline 4472c9123733c552bf259385f9ef1683 https://www.encodeproject.org/files/ENCFF545PYA/@@download/ENCFF545PYA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF293TTT bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BEL, ENCFF807MUK 656913416 ENCODE Processing Pipeline a8a1630e4d654c1a47a7654313a1f253 https://www.encodeproject.org/files/ENCFF293TTT/@@download/ENCFF293TTT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF258HKW bam unfiltered alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BEQ, ENCFF807MUK 2670218700 ENCODE Processing Pipeline 7525c5faf0464ac377b8f11e255a3239 https://www.encodeproject.org/files/ENCFF258HKW/@@download/ENCFF258HKW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF978OOP bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BEQ, ENCFF807MUK 1783194109 ENCODE Processing Pipeline e9264a1c5e4701c6b42e8ac6f6b56ca0 https://www.encodeproject.org/files/ENCFF978OOP/@@download/ENCFF978OOP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF640KOY bigWig signal p-value ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL 1043788735 ENCODE Processing Pipeline ee00edc6d56766bebc8b61a2a59ed3e8 https://www.encodeproject.org/files/ENCFF640KOY/@@download/ENCFF640KOY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF966LFP bigWig fold change over control ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF978OOP 1265400181 ENCODE Processing Pipeline 444dc5dce6621c75bcc6abb6d1eccc78 https://www.encodeproject.org/files/ENCFF966LFP/@@download/ENCFF966LFP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF677XOS bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF978OOP 7204705 ENCODE Processing Pipeline 614d40655601b670b3d7550d1f041a7f https://www.encodeproject.org/files/ENCFF677XOS/@@download/ENCFF677XOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF670QJS bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL 6810374 ENCODE Processing Pipeline 3ff7564521f4c2c8a8f5c391c9c91e28 https://www.encodeproject.org/files/ENCFF670QJS/@@download/ENCFF670QJS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF657VMQ bigBed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF670QJS 12444890 ENCODE Processing Pipeline df8b9ab0ffc9382613fd484feb0ef59c https://www.encodeproject.org/files/ENCFF657VMQ/@@download/ENCFF657VMQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF422BZK bigBed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF199MPQ 12305051 ENCODE Processing Pipeline 6e70c1aac0acac17e69bd2ac5c8b35fd https://www.encodeproject.org/files/ENCFF422BZK/@@download/ENCFF422BZK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF329GRI bigWig signal p-value ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL, ENCFF978OOP 1477708926 ENCODE Processing Pipeline 9193a0e4d8aa51ec70a849685f3fa03a https://www.encodeproject.org/files/ENCFF329GRI/@@download/ENCFF329GRI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF659XAS bigWig fold change over control ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL 852835198 ENCODE Processing Pipeline 6ae64edcc270a3af41f6173973142e26 https://www.encodeproject.org/files/ENCFF659XAS/@@download/ENCFF659XAS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF506VXV bigWig fold change over control ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF051ILA, ENCFF645CCA, ENCFF943MYJ 1274494397 ENCODE Processing Pipeline 6af93a2f6fba5ac3ad63b661d0582c7e https://www.encodeproject.org/files/ENCFF506VXV/@@download/ENCFF506VXV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF321AHD bigWig fold change over control ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF051ILA, ENCFF586GBV, ENCFF645CCA, ENCFF943MYJ 1453497971 ENCODE Processing Pipeline e2e6101938cee5d8d886a44507dcfae1 https://www.encodeproject.org/files/ENCFF321AHD/@@download/ENCFF321AHD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF044RST bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF586GBV, ENCFF645CCA, ENCFF943MYJ 6720629 ENCODE Processing Pipeline 50a0bcff563b8fc2d880aec3fd9db20a https://www.encodeproject.org/files/ENCFF044RST/@@download/ENCFF044RST.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF054DHS bed narrowPeak conservative idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF044RST, ENCFF232QOZ, ENCFF419RSJ, ENCFF649GPF 108983 ENCODE Processing Pipeline 8282eff1dd947ab18aaff780608e4e7c https://www.encodeproject.org/files/ENCFF054DHS/@@download/ENCFF054DHS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF908ERS bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF054DHS 306019 ENCODE Processing Pipeline 2e5b0d32c1bb1cbbd849f0b38be43967 https://www.encodeproject.org/files/ENCFF908ERS/@@download/ENCFF908ERS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF032KFQ bigWig signal p-value ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF051ILA, ENCFF586GBV, ENCFF645CCA, ENCFF943MYJ 1280508847 ENCODE Processing Pipeline 4ead040f60a74bffd2065d0f2c6d003a https://www.encodeproject.org/files/ENCFF032KFQ/@@download/ENCFF032KFQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF250BRL bigWig signal p-value ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF978OOP 1286854443 ENCODE Processing Pipeline 1ca1160bcd99c664582bb5dd50c65f75 https://www.encodeproject.org/files/ENCFF250BRL/@@download/ENCFF250BRL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF053TDB bigWig fold change over control ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL, ENCFF978OOP 1408670873 ENCODE Processing Pipeline 50cefd0677032d4499488ddb0d2463ad https://www.encodeproject.org/files/ENCFF053TDB/@@download/ENCFF053TDB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF199MPQ bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL, ENCFF978OOP 7262600 ENCODE Processing Pipeline 406469e0d14fd54a567ac5af3fa9a95f https://www.encodeproject.org/files/ENCFF199MPQ/@@download/ENCFF199MPQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF154PDW bigBed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF677XOS 12505639 ENCODE Processing Pipeline 0fafb823c0a270b8c63b9ebeb986d1d8 https://www.encodeproject.org/files/ENCFF154PDW/@@download/ENCFF154PDW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF493FED bed narrowPeak optimal idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF199MPQ, ENCFF670QJS, ENCFF677XOS 108726 ENCODE Processing Pipeline 9910bb382e3170e3889630548487d0bb https://www.encodeproject.org/files/ENCFF493FED/@@download/ENCFF493FED.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF135LRF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF493FED 305196 ENCODE Processing Pipeline 5280ec418c9a74439a0c70a682602063 https://www.encodeproject.org/files/ENCFF135LRF/@@download/ENCFF135LRF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF216XTY bigBed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF044RST 12347262 ENCODE Processing Pipeline ad42d8609a8931255970a284b1a67bfb https://www.encodeproject.org/files/ENCFF216XTY/@@download/ENCFF216XTY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF790QBA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF504QZJ 311066 ENCODE Processing Pipeline 6c76b0387e795bddeb738ffdc36c4f3d https://www.encodeproject.org/files/ENCFF790QBA/@@download/ENCFF790QBA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF876PHC bigWig signal p-value ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF051ILA, ENCFF645CCA, ENCFF943MYJ 1181763845 ENCODE Processing Pipeline 3a21ac351083883720921f3686c45e80 https://www.encodeproject.org/files/ENCFF876PHC/@@download/ENCFF876PHC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF649GPF bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF051ILA, ENCFF586GBV, ENCFF645CCA, ENCFF943MYJ 7244291 ENCODE Processing Pipeline 6611a3c53d27f2a2bf1e2c0a7a00acc7 https://www.encodeproject.org/files/ENCFF649GPF/@@download/ENCFF649GPF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF762EDH bigBed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF649GPF 12281799 ENCODE Processing Pipeline 9af31c1b855280680a684766526a80aa https://www.encodeproject.org/files/ENCFF762EDH/@@download/ENCFF762EDH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF504QZJ bed narrowPeak optimal idr thresholded peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF044RST, ENCFF232QOZ, ENCFF419RSJ, ENCFF649GPF 110412 ENCODE Processing Pipeline d014927ed83045ce1712774291a47e4b https://www.encodeproject.org/files/ENCFF504QZJ/@@download/ENCFF504QZJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF661AGA bigWig signal p-value ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF586GBV, ENCFF645CCA, ENCFF943MYJ 1001340079 ENCODE Processing Pipeline 04005096723e039615787956512d5830 https://www.encodeproject.org/files/ENCFF661AGA/@@download/ENCFF661AGA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF633YWL bigWig fold change over control ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF586GBV, ENCFF645CCA, ENCFF943MYJ 832518965 ENCODE Processing Pipeline 6ac9a90781d1e5c8b2c592d7b9937c17 https://www.encodeproject.org/files/ENCFF633YWL/@@download/ENCFF633YWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF232QOZ bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF051ILA, ENCFF645CCA, ENCFF943MYJ 7203823 ENCODE Processing Pipeline f0b95d1818b2d7908912d0a837e8be3c https://www.encodeproject.org/files/ENCFF232QOZ/@@download/ENCFF232QOZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF380AKN bigBed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF232QOZ 12504605 ENCODE Processing Pipeline 3a6261a9b9ed5ff3e0bd4eb8c1e67687 https://www.encodeproject.org/files/ENCFF380AKN/@@download/ENCFF380AKN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF360RYW bam unfiltered alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 100 ENCFF141RCB, ENCFF781WSM, ENCFF807MUK 5599778941 ENCODE Processing Pipeline 94170d770ddf0fa54dbee9794531e9e7 https://www.encodeproject.org/files/ENCFF360RYW/@@download/ENCFF360RYW.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF555ROG bam unfiltered alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 100 ENCFF474LQU, ENCFF532XZW, ENCFF807MUK 5398452977 ENCODE Processing Pipeline 801938e459e781f6966ba250bbc2301c https://www.encodeproject.org/files/ENCFF555ROG/@@download/ENCFF555ROG.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF781WSM fastq reads ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF141RCB 2666642817 Michael Snyder, Stanford cdb721e4d03b1dc1d4ae11f25eee2f42 SRA:SRR5111258 https://www.encodeproject.org/files/ENCFF781WSM/@@download/ENCFF781WSM.fastq.gz Illumina HiSeq 2000 /files/ENCFF928HTI/ released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF474LQU fastq reads ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF532XZW 2407303225 Michael Snyder, Stanford f27974a57a7e72a55e3e5e0c14b6e45c SRA:SRR5111257 https://www.encodeproject.org/files/ENCFF474LQU/@@download/ENCFF474LQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF931LWJ/ released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF141RCB fastq reads ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF781WSM 2493677360 Michael Snyder, Stanford 7103de46bbf7012e4d25110ae3d020e1 SRA:SRR5111258 https://www.encodeproject.org/files/ENCFF141RCB/@@download/ENCFF141RCB.fastq.gz Illumina HiSeq 2000 /files/ENCFF931LWJ/ released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF532XZW fastq reads ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF474LQU 2505950617 Michael Snyder, Stanford dc0f900b534bf449927baeb95cc84ceb SRA:SRR5111257 https://www.encodeproject.org/files/ENCFF532XZW/@@download/ENCFF532XZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF928HTI/ released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF024MPE bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 100 ENCFF474LQU, ENCFF532XZW, ENCFF807MUK 4204614264 ENCODE Processing Pipeline 5752bc3337888c69d4b358adf2d18067 https://www.encodeproject.org/files/ENCFF024MPE/@@download/ENCFF024MPE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF866OLR bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 100 ENCFF141RCB, ENCFF781WSM, ENCFF807MUK 4495717653 ENCODE Processing Pipeline 93d63ad8b3ec69528ee87d465ef2a25c https://www.encodeproject.org/files/ENCFF866OLR/@@download/ENCFF866OLR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF507CFN bam unfiltered alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 100 ENCFF474LQU, ENCFF532XZW, ENCFF643CGH 5405666788 ENCODE Processing Pipeline 67030a30e0a55bf820e5af14b024cbb0 https://www.encodeproject.org/files/ENCFF507CFN/@@download/ENCFF507CFN.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF647HAV bam unfiltered alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 100 ENCFF141RCB, ENCFF643CGH, ENCFF781WSM 5608212084 ENCODE Processing Pipeline 537139d5926e646c91d2e7cfb6a227ac https://www.encodeproject.org/files/ENCFF647HAV/@@download/ENCFF647HAV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF400SKV bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 100 ENCFF474LQU, ENCFF532XZW, ENCFF643CGH 4207551439 ENCODE Processing Pipeline 5fee2d667108165a647aa82047dee4a9 https://www.encodeproject.org/files/ENCFF400SKV/@@download/ENCFF400SKV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF498KCA bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 100 ENCFF141RCB, ENCFF643CGH, ENCFF781WSM 4497998934 ENCODE Processing Pipeline c1e3892de8c9f395b638df6462168bce https://www.encodeproject.org/files/ENCFF498KCA/@@download/ENCFF498KCA.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF137LUR bigWig signal p-value ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF266FHE, ENCFF400SKV 1000969783 ENCODE Processing Pipeline 13a38c071bc05d7e1e153739cc6cccd4 https://www.encodeproject.org/files/ENCFF137LUR/@@download/ENCFF137LUR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF672DUT bigWig signal p-value ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF266FHE, ENCFF498KCA 1122517699 ENCODE Processing Pipeline ec5a40d6780b8698ea81d0e15b39f968 https://www.encodeproject.org/files/ENCFF672DUT/@@download/ENCFF672DUT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF773EUU bigWig signal p-value ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF266FHE, ENCFF400SKV, ENCFF498KCA 1270359537 ENCODE Processing Pipeline 2f991d5b0a4c38e190b46711194ee1a3 https://www.encodeproject.org/files/ENCFF773EUU/@@download/ENCFF773EUU.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF044YVQ bigWig fold change over control ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF266FHE, ENCFF400SKV 1104364794 ENCODE Processing Pipeline 7086f088c93fe4eb157eda6614fcbb2b https://www.encodeproject.org/files/ENCFF044YVQ/@@download/ENCFF044YVQ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF469AOM bigWig fold change over control ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF266FHE, ENCFF498KCA 1087777367 ENCODE Processing Pipeline 6c3581af45e18aa4c61d05cb8594b61c https://www.encodeproject.org/files/ENCFF469AOM/@@download/ENCFF469AOM.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF069ETX bigWig fold change over control ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF266FHE, ENCFF400SKV, ENCFF498KCA 1647143355 ENCODE Processing Pipeline a46c91167fbbfb8717567948bcfd6d33 https://www.encodeproject.org/files/ENCFF069ETX/@@download/ENCFF069ETX.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF501PAH bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF266FHE, ENCFF498KCA 6086835 ENCODE Processing Pipeline 48d3320887430fa40ae61106359f7d60 https://www.encodeproject.org/files/ENCFF501PAH/@@download/ENCFF501PAH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF464CGY bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF266FHE, ENCFF400SKV, ENCFF498KCA 7038578 ENCODE Processing Pipeline e3c3e79c0e54a9e76053c4c58f9dcca5 https://www.encodeproject.org/files/ENCFF464CGY/@@download/ENCFF464CGY.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF650BPF bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF266FHE, ENCFF400SKV 6157446 ENCODE Processing Pipeline df51471479399d35f908de94fe5a4611 https://www.encodeproject.org/files/ENCFF650BPF/@@download/ENCFF650BPF.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF083OJG bigBed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF650BPF 11203780 ENCODE Processing Pipeline fd19fd05052dc3db84c4ed225b1591eb https://www.encodeproject.org/files/ENCFF083OJG/@@download/ENCFF083OJG.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF061IFC bigBed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF501PAH 11236827 ENCODE Processing Pipeline 9a42a8c7f47eef26ad5e89379b43a1dd https://www.encodeproject.org/files/ENCFF061IFC/@@download/ENCFF061IFC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF941GZX bigBed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF464CGY 11126585 ENCODE Processing Pipeline c464674ce8ff60faf6a0d0903b4bba9d https://www.encodeproject.org/files/ENCFF941GZX/@@download/ENCFF941GZX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF736AVY bed narrowPeak conservative idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF464CGY, ENCFF501PAH, ENCFF650BPF 74131 ENCODE Processing Pipeline 6cc474df468741aaf7591d366036aff6 https://www.encodeproject.org/files/ENCFF736AVY/@@download/ENCFF736AVY.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF622AET bigBed narrowPeak conservative idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF736AVY 200516 ENCODE Processing Pipeline e1548635bca7d087a209b01c30cb8753 https://www.encodeproject.org/files/ENCFF622AET/@@download/ENCFF622AET.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF229BQZ bed narrowPeak optimal idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF464CGY, ENCFF501PAH, ENCFF650BPF 97136 ENCODE Processing Pipeline 6ad779af2eef6ffe8b0bc3aae3197028 https://www.encodeproject.org/files/ENCFF229BQZ/@@download/ENCFF229BQZ.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF257VBE bigBed narrowPeak optimal idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF229BQZ 234930 ENCODE Processing Pipeline 82e497fe40440440903c4e1c1710b06c https://www.encodeproject.org/files/ENCFF257VBE/@@download/ENCFF257VBE.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF554EUB bigWig fold change over control ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF024MPE, ENCFF304EUO 1089901978 ENCODE Processing Pipeline 3e3aac7e0f87858377997d14da71916b https://www.encodeproject.org/files/ENCFF554EUB/@@download/ENCFF554EUB.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF536LRM bigWig signal p-value ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF304EUO, ENCFF866OLR 1039264164 ENCODE Processing Pipeline 1176f0def0b43ce6a5a202262881f181 https://www.encodeproject.org/files/ENCFF536LRM/@@download/ENCFF536LRM.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF355KNJ bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF024MPE, ENCFF304EUO 6157206 ENCODE Processing Pipeline dd2a0ea9d56a21d71096278aa6ef3506 https://www.encodeproject.org/files/ENCFF355KNJ/@@download/ENCFF355KNJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF357IPW bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF304EUO, ENCFF866OLR 6081540 ENCODE Processing Pipeline 9ff6ea0815cc9537fdb85397e1843422 https://www.encodeproject.org/files/ENCFF357IPW/@@download/ENCFF357IPW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF488ZUO bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF024MPE, ENCFF304EUO, ENCFF866OLR 7028784 ENCODE Processing Pipeline 232c2f36af89f4cbd6083828588994ca https://www.encodeproject.org/files/ENCFF488ZUO/@@download/ENCFF488ZUO.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF462TZL bigWig signal p-value ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF024MPE, ENCFF304EUO 946918104 ENCODE Processing Pipeline aabd321121ac0fc7d403ba652a38965f https://www.encodeproject.org/files/ENCFF462TZL/@@download/ENCFF462TZL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF442MPN bigWig signal p-value ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF024MPE, ENCFF304EUO, ENCFF866OLR 1267738106 ENCODE Processing Pipeline e743b879de1700e299fbf712284065d4 https://www.encodeproject.org/files/ENCFF442MPN/@@download/ENCFF442MPN.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF627XTL bigWig fold change over control ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF024MPE, ENCFF304EUO, ENCFF866OLR 1644631791 ENCODE Processing Pipeline 3d378a7757e570d4a25a699916e1ae0b https://www.encodeproject.org/files/ENCFF627XTL/@@download/ENCFF627XTL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF475EBC bigBed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF488ZUO 11106766 ENCODE Processing Pipeline 96cdc1504a504b90bf611167f0865964 https://www.encodeproject.org/files/ENCFF475EBC/@@download/ENCFF475EBC.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF569DRA bigBed narrowPeak conservative idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF403EOA 197447 ENCODE Processing Pipeline fbaf2804d3cd0a3d42ca59dc861e863a https://www.encodeproject.org/files/ENCFF569DRA/@@download/ENCFF569DRA.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF708KMN bigWig fold change over control ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF304EUO, ENCFF866OLR 1090261247 ENCODE Processing Pipeline 1d40e780f4bb54fb6f66ea27916e2619 https://www.encodeproject.org/files/ENCFF708KMN/@@download/ENCFF708KMN.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF595RCV bigBed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF355KNJ 11185963 ENCODE Processing Pipeline ba4147970d04ba41013e09e5130070f5 https://www.encodeproject.org/files/ENCFF595RCV/@@download/ENCFF595RCV.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF835CTI bigBed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF357IPW 11217584 ENCODE Processing Pipeline a625e938cf49d6b8f7487d510dea7b17 https://www.encodeproject.org/files/ENCFF835CTI/@@download/ENCFF835CTI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF403EOA bed narrowPeak conservative idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF355KNJ, ENCFF357IPW, ENCFF488ZUO 72715 ENCODE Processing Pipeline 64b1427667f0ece7692715b330338dd7 https://www.encodeproject.org/files/ENCFF403EOA/@@download/ENCFF403EOA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF007DKB bed narrowPeak optimal idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF355KNJ, ENCFF357IPW, ENCFF488ZUO 97313 ENCODE Processing Pipeline e43f9679c5db6d500d389acadd52871e https://www.encodeproject.org/files/ENCFF007DKB/@@download/ENCFF007DKB.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF964LYS bigBed narrowPeak optimal idr thresholded peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF007DKB 234005 ENCODE Processing Pipeline 008000885684e0c891ceef6b7d25c234 https://www.encodeproject.org/files/ENCFF964LYS/@@download/ENCFF964LYS.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF434EYR fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF079KXJ 779342388 Michael Snyder, Stanford 707de45a1e9ee0cf0da09433352957ce https://www.encodeproject.org/files/ENCFF434EYR/@@download/ENCFF434EYR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF079KXJ fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF434EYR 760779845 Michael Snyder, Stanford cea3bb82ec232170786ef0f9824bb83f https://www.encodeproject.org/files/ENCFF079KXJ/@@download/ENCFF079KXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF910HKX fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF629ZTW 1133747720 Michael Snyder, Stanford ec623c6955709be8965d95c104318e33 https://www.encodeproject.org/files/ENCFF910HKX/@@download/ENCFF910HKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF629ZTW fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF910HKX 1156462092 Michael Snyder, Stanford 62fff06f78f34c94327d4a514af6aba5 https://www.encodeproject.org/files/ENCFF629ZTW/@@download/ENCFF629ZTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF393JDU fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF758PBW 2893834765 Michael Snyder, Stanford 3cc639f61a3942ddab96d0fc8e098315 SRA:SRR6213716 https://www.encodeproject.org/files/ENCFF393JDU/@@download/ENCFF393JDU.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF522PJZ fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF219PKK 4951681045 Michael Snyder, Stanford 03c608d86ef7654d4f8196ed6f3c2962 SRA:SRR6213717 https://www.encodeproject.org/files/ENCFF522PJZ/@@download/ENCFF522PJZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF219PKK fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF522PJZ 4662412169 Michael Snyder, Stanford a6c31658ad21ae0538d3149b3a718db0 SRA:SRR6213717 https://www.encodeproject.org/files/ENCFF219PKK/@@download/ENCFF219PKK.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF758PBW fastq reads ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF393JDU 2753112219 Michael Snyder, Stanford 6d7b24f245d87d3ef9dfc59412afae6e SRA:SRR6213716 https://www.encodeproject.org/files/ENCFF758PBW/@@download/ENCFF758PBW.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF295PNK bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF643CGH, ENCFF758PBW 4780517353 ENCODE Processing Pipeline 2f511986efaf1f5f45dba91df1dc6560 https://www.encodeproject.org/files/ENCFF295PNK/@@download/ENCFF295PNK.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF685SRU bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF643CGH 7981926116 ENCODE Processing Pipeline a71bf9f23b481cd801d1b9f8f1b5c128 https://www.encodeproject.org/files/ENCFF685SRU/@@download/ENCFF685SRU.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF855SJQ bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF643CGH, ENCFF758PBW 2570768417 ENCODE Processing Pipeline 5e44a5ae55b790739d1edb50096b3a8d https://www.encodeproject.org/files/ENCFF855SJQ/@@download/ENCFF855SJQ.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF550TMJ bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF643CGH 4765074197 ENCODE Processing Pipeline 6e4c5567a37413194ee573363b9af0df https://www.encodeproject.org/files/ENCFF550TMJ/@@download/ENCFF550TMJ.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF632OPE bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF666ATR, ENCFF855SJQ 1065666158 ENCODE Processing Pipeline c63670d6e7cba57e2664cb2dcda97f30 https://www.encodeproject.org/files/ENCFF632OPE/@@download/ENCFF632OPE.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF305TQW bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF666ATR, ENCFF855SJQ 912788141 ENCODE Processing Pipeline 5e792a98813a6525c18b21cddab1219d https://www.encodeproject.org/files/ENCFF305TQW/@@download/ENCFF305TQW.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF552URD bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR, ENCFF855SJQ 2088354957 ENCODE Processing Pipeline 68cae001e62649942a6b666e3be9d5df https://www.encodeproject.org/files/ENCFF552URD/@@download/ENCFF552URD.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF386YOK bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR 1976816521 ENCODE Processing Pipeline ea4adf595467048487acd3bb8fb8be21 https://www.encodeproject.org/files/ENCFF386YOK/@@download/ENCFF386YOK.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF239BOX bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR 1659052991 ENCODE Processing Pipeline b86dde23fd8eae3a1eeb8fe5b0b25d10 https://www.encodeproject.org/files/ENCFF239BOX/@@download/ENCFF239BOX.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF367WTF bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR, ENCFF855SJQ 2302438030 ENCODE Processing Pipeline b8fd1b5fd97964c4a1beb8b7e336e872 https://www.encodeproject.org/files/ENCFF367WTF/@@download/ENCFF367WTF.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF172RVL bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF208VBZ 13450572 ENCODE Processing Pipeline fc127d3beffe2f138f54bd6568af223b https://www.encodeproject.org/files/ENCFF172RVL/@@download/ENCFF172RVL.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF414COR bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR 7117560 ENCODE Processing Pipeline 951a89accd11d8f999c61af729349e9e https://www.encodeproject.org/files/ENCFF414COR/@@download/ENCFF414COR.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF169ZAN bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF322NTO, ENCFF550TMJ, ENCFF666ATR, ENCFF855SJQ 7242858 ENCODE Processing Pipeline 56b2ba5cf8d5cdfadbc910ced261e823 https://www.encodeproject.org/files/ENCFF169ZAN/@@download/ENCFF169ZAN.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF208VBZ bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF666ATR, ENCFF855SJQ 6380883 ENCODE Processing Pipeline f407d7e045a9e8fbdb1034cc0709a35c https://www.encodeproject.org/files/ENCFF208VBZ/@@download/ENCFF208VBZ.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF630TMV bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF414COR 13438120 ENCODE Processing Pipeline 22fc1c1e465dfea2d8b45e597b742a67 https://www.encodeproject.org/files/ENCFF630TMV/@@download/ENCFF630TMV.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF275NTD bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF169ZAN 13386314 ENCODE Processing Pipeline 9e657d3383fbc6c4042f628ad89c9d38 https://www.encodeproject.org/files/ENCFF275NTD/@@download/ENCFF275NTD.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF835YGE bed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF169ZAN, ENCFF208VBZ, ENCFF414COR, ENCFF419RSJ 258351 ENCODE Processing Pipeline 8c3728cf92c296a8ec479e40922c1d78 https://www.encodeproject.org/files/ENCFF835YGE/@@download/ENCFF835YGE.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF115DEU bigBed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF996NBR 627430 ENCODE Processing Pipeline bfda212cfb5ffe34412803b59cb167b1 https://www.encodeproject.org/files/ENCFF115DEU/@@download/ENCFF115DEU.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF425AIW bigBed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF835YGE 516494 ENCODE Processing Pipeline 2a8aa88d999bd0eda9183c208adbaee4 https://www.encodeproject.org/files/ENCFF425AIW/@@download/ENCFF425AIW.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF996NBR bed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF169ZAN, ENCFF208VBZ, ENCFF414COR, ENCFF419RSJ 333536 ENCODE Processing Pipeline 744d8c1f7188f92061c27c8bee6f4ffa https://www.encodeproject.org/files/ENCFF996NBR/@@download/ENCFF996NBR.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF002ICQ bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF807MUK 7985632748 ENCODE Processing Pipeline eff5340ee5936870eaf202a219e6da95 https://www.encodeproject.org/files/ENCFF002ICQ/@@download/ENCFF002ICQ.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF195ADD bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF807MUK 4758972576 ENCODE Processing Pipeline e23d9df77784794eb6932e91e37ea62d https://www.encodeproject.org/files/ENCFF195ADD/@@download/ENCFF195ADD.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF170QJT bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF758PBW, ENCFF807MUK 2567429331 ENCODE Processing Pipeline 31ab2c31031c51a4b1715ae77271a9fa https://www.encodeproject.org/files/ENCFF170QJT/@@download/ENCFF170QJT.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF843DWJ bam unfiltered alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF758PBW, ENCFF807MUK 4784269198 ENCODE Processing Pipeline 9b450a666c8333250946478514d3e434 https://www.encodeproject.org/files/ENCFF843DWJ/@@download/ENCFF843DWJ.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF171QIK bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 1065526331 ENCODE Processing Pipeline 33fbfeb355e6ddcd50fc9a2e6403d8bd https://www.encodeproject.org/files/ENCFF171QIK/@@download/ENCFF171QIK.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF182DTK bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 1754749945 ENCODE Processing Pipeline bb0b02c034cf10ccdcae18047645d805 https://www.encodeproject.org/files/ENCFF182DTK/@@download/ENCFF182DTK.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF519KSR bigWig signal p-value ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF170QJT, ENCFF195ADD, ENCFF592WAL, ENCFF901CND 2174247265 ENCODE Processing Pipeline facc8e609192a102f9ab35f78c745808 https://www.encodeproject.org/files/ENCFF519KSR/@@download/ENCFF519KSR.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF064PBU bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 1071990010 ENCODE Processing Pipeline 2d17372b0eaaa52a7f2a03c03ff7c753 https://www.encodeproject.org/files/ENCFF064PBU/@@download/ENCFF064PBU.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF017TFI bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF170QJT, ENCFF195ADD, ENCFF592WAL, ENCFF901CND 2316579135 ENCODE Processing Pipeline 927de2f066c4d231265dae1dc6a16649 https://www.encodeproject.org/files/ENCFF017TFI/@@download/ENCFF017TFI.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF270NTV bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 7114875 ENCODE Processing Pipeline 059805cdf7eca1e7e69fced8db3c4870 https://www.encodeproject.org/files/ENCFF270NTV/@@download/ENCFF270NTV.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF445UJF bed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF014TGJ, ENCFF270NTV, ENCFF310LKB 329507 ENCODE Processing Pipeline f6fdb19b8e301226eee898e1023fe74c https://www.encodeproject.org/files/ENCFF445UJF/@@download/ENCFF445UJF.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF717HFR bigWig fold change over control ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 1997717337 ENCODE Processing Pipeline 7d09a224f91106f2b0d0404570045b2f https://www.encodeproject.org/files/ENCFF717HFR/@@download/ENCFF717HFR.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF310LKB bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 6375649 ENCODE Processing Pipeline 830475561fdc0192989ad9f5baac0738 https://www.encodeproject.org/files/ENCFF310LKB/@@download/ENCFF310LKB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF014TGJ bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF170QJT, ENCFF195ADD, ENCFF592WAL, ENCFF901CND 7239768 ENCODE Processing Pipeline 700fc1e8997fb8def5756e52fe7293cd https://www.encodeproject.org/files/ENCFF014TGJ/@@download/ENCFF014TGJ.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF647GCE bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF310LKB 13432004 ENCODE Processing Pipeline bb43a519f50ffbe3871cea925d43b3bf https://www.encodeproject.org/files/ENCFF647GCE/@@download/ENCFF647GCE.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF456ODJ bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF270NTV 13427749 ENCODE Processing Pipeline a88aba96f7d3963bd8fe5c6a3993ab4d https://www.encodeproject.org/files/ENCFF456ODJ/@@download/ENCFF456ODJ.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF521DFO bigBed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF014TGJ 13377849 ENCODE Processing Pipeline d9451eeb5c62c5d0d15908974f04280b https://www.encodeproject.org/files/ENCFF521DFO/@@download/ENCFF521DFO.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF388DPA bed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF014TGJ, ENCFF270NTV, ENCFF310LKB 257624 ENCODE Processing Pipeline f530d2f41e02007060057add9d54d2df https://www.encodeproject.org/files/ENCFF388DPA/@@download/ENCFF388DPA.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF193UZT bigBed narrowPeak conservative idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF388DPA 514659 ENCODE Processing Pipeline 8a29abe9632358d6ec2d8857a7d082a0 https://www.encodeproject.org/files/ENCFF193UZT/@@download/ENCFF193UZT.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF990GBV bigBed narrowPeak optimal idr thresholded peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF445UJF 620374 ENCODE Processing Pipeline 3057da991cc4ed0bfc6cb3d62b64aeda https://www.encodeproject.org/files/ENCFF990GBV/@@download/ENCFF990GBV.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF000YJZ bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPA 405110595 Sherman Weissman, Yale 6ca25dac2980d8af4c93e0e015d44a6d https://www.encodeproject.org/files/ENCFF000YJZ/@@download/ENCFF000YJZ.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YKA bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMR 243005 Sherman Weissman, Yale 9c29a4ee19065032579c1df6cd2e9cf1 https://www.encodeproject.org/files/ENCFF000YKA/@@download/ENCFF000YKA.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YKB bigWig signal ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 329267281 Sherman Weissman, Yale 06155fdfa8b7fc961053b3c12eca1919 https://www.encodeproject.org/files/ENCFF000YKB/@@download/ENCFF000YKB.bigWig hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YKC bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPC 872376263 Sherman Weissman, Yale c120cf67e9c6ade387df85c3cf6e8423 https://www.encodeproject.org/files/ENCFF000YKC/@@download/ENCFF000YKC.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPA fastq reads ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 308688689 Sherman Weissman, Yale e0fee957ff9417da67da83b0e85ff92f https://www.encodeproject.org/files/ENCFF000YPA/@@download/ENCFF000YPA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPC fastq reads ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 702759299 Sherman Weissman, Yale f23015d997a2cadd0457219482dc4a2c https://www.encodeproject.org/files/ENCFF000YPC/@@download/ENCFF000YPC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VMR bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 80854 Sherman Weissman, Yale eac64e0aefa6def263bf52c0913fd11d https://www.encodeproject.org/files/ENCFF001VMR/@@download/ENCFF001VMR.bed.gz hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CWE bed narrowPeak optimal idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 229866 ENCODE Consortium Analysis Working Group 621f5c78a485d7d2f5774a508d526313 https://www.encodeproject.org/files/ENCFF002CWE/@@download/ENCFF002CWE.bed.gz hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF610TRS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWE 502670 ENCODE Consortium 6c217510b3e056e949bbcb4f44aecaa7 https://www.encodeproject.org/files/ENCFF610TRS/@@download/ENCFF610TRS.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF268XFT bam unfiltered alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPA, ENCFF643CGH 406480041 ENCODE Processing Pipeline 2ff1b01b603a9eb8d28700d5865b7511 https://www.encodeproject.org/files/ENCFF268XFT/@@download/ENCFF268XFT.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF707BRW bam unfiltered alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPA, ENCFF807MUK 405648611 ENCODE Processing Pipeline b1effdccaa7c370d24073a622a4a3231 https://www.encodeproject.org/files/ENCFF707BRW/@@download/ENCFF707BRW.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF357MHM bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPA, ENCFF643CGH 269463976 ENCODE Processing Pipeline 570cbe501650f28205ab4a7e75ff2e6f https://www.encodeproject.org/files/ENCFF357MHM/@@download/ENCFF357MHM.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF834GPI bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPA, ENCFF807MUK 269802543 ENCODE Processing Pipeline e9315a43ef34040c0d6a2a320b997396 https://www.encodeproject.org/files/ENCFF834GPI/@@download/ENCFF834GPI.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF922YDR bam unfiltered alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPC, ENCFF643CGH 797515019 ENCODE Processing Pipeline c9e563b905ad8844b0753ef88609e2bf https://www.encodeproject.org/files/ENCFF922YDR/@@download/ENCFF922YDR.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF491EUN bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPC, ENCFF643CGH 347767392 ENCODE Processing Pipeline 775f18315c8f240746a81b5bccd33d15 https://www.encodeproject.org/files/ENCFF491EUN/@@download/ENCFF491EUN.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF642JBD bam unfiltered alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPC, ENCFF807MUK 794906491 ENCODE Processing Pipeline 4e6d5c7e2c1d4d5f3da0d15baa9463bb https://www.encodeproject.org/files/ENCFF642JBD/@@download/ENCFF642JBD.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF203FSU bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPC, ENCFF807MUK 348228954 ENCODE Processing Pipeline c2567e33c966d2221371a5914563bf2b https://www.encodeproject.org/files/ENCFF203FSU/@@download/ENCFF203FSU.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF830ZOZ bigWig signal p-value ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF834GPI, ENCFF998GMZ 244768194 ENCODE Processing Pipeline 3cc944a9248adbec7074b14616031788 https://www.encodeproject.org/files/ENCFF830ZOZ/@@download/ENCFF830ZOZ.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF595EQH bigWig signal p-value ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203FSU, ENCFF998GMZ 284715487 ENCODE Processing Pipeline 11c50eeda42b118da54af8443392ca65 https://www.encodeproject.org/files/ENCFF595EQH/@@download/ENCFF595EQH.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF177OYJ bigWig signal p-value ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203FSU, ENCFF834GPI, ENCFF998GMZ 314064357 ENCODE Processing Pipeline fbaba2578b46e6f2428fa84b50cb8937 https://www.encodeproject.org/files/ENCFF177OYJ/@@download/ENCFF177OYJ.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF343ION bigWig signal p-value ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF491EUN 249740775 ENCODE Processing Pipeline 047559ea5529d78a83460636d6b23040 https://www.encodeproject.org/files/ENCFF343ION/@@download/ENCFF343ION.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF970TQC bigWig fold change over control ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203FSU, ENCFF834GPI, ENCFF998GMZ 268905335 ENCODE Processing Pipeline c132384af27a3a768dad22bc26deadb6 https://www.encodeproject.org/files/ENCFF970TQC/@@download/ENCFF970TQC.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF326MAA bigWig signal p-value ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF357MHM 269666334 ENCODE Processing Pipeline 51d31a55e6459f963c0558c41eaf3a9b https://www.encodeproject.org/files/ENCFF326MAA/@@download/ENCFF326MAA.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF167IGK bigWig signal p-value ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF357MHM, ENCFF491EUN 314636107 ENCODE Processing Pipeline 93976e0aff14b45d76674d1533f14bd7 https://www.encodeproject.org/files/ENCFF167IGK/@@download/ENCFF167IGK.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF643AFV bigWig fold change over control ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF834GPI, ENCFF998GMZ 142606734 ENCODE Processing Pipeline e605db660496fea4875a0c7b3225a94b https://www.encodeproject.org/files/ENCFF643AFV/@@download/ENCFF643AFV.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF098OFQ bigWig fold change over control ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203FSU, ENCFF998GMZ 160407580 ENCODE Processing Pipeline 475b720f2b4240fe4908cfce21069e39 https://www.encodeproject.org/files/ENCFF098OFQ/@@download/ENCFF098OFQ.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF423CXR bigWig fold change over control ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF491EUN 153718740 ENCODE Processing Pipeline 7e9c5f1dccbe8e2b48e32b782b9e253d https://www.encodeproject.org/files/ENCFF423CXR/@@download/ENCFF423CXR.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF089DYC bigWig fold change over control ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF357MHM 143861547 ENCODE Processing Pipeline 324ac9e729d16b70cf52a29612505d55 https://www.encodeproject.org/files/ENCFF089DYC/@@download/ENCFF089DYC.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF028OCG bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF834GPI, ENCFF998GMZ 3212789 ENCODE Processing Pipeline ed9641efadb73b9a2d36f0187bb15fd8 https://www.encodeproject.org/files/ENCFF028OCG/@@download/ENCFF028OCG.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF837BDB bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203FSU, ENCFF998GMZ 3858506 ENCODE Processing Pipeline 9daa2ed65158062bc55f643142b2d1bc https://www.encodeproject.org/files/ENCFF837BDB/@@download/ENCFF837BDB.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF951BWR bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203FSU, ENCFF834GPI, ENCFF998GMZ 5036397 ENCODE Processing Pipeline 55c27479c67c84b1bd80da3ed3f710d0 https://www.encodeproject.org/files/ENCFF951BWR/@@download/ENCFF951BWR.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF431BNL bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF028OCG 7033799 ENCODE Processing Pipeline 42ca55fe07c664ea7b1e2b7a9151fe13 https://www.encodeproject.org/files/ENCFF431BNL/@@download/ENCFF431BNL.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF699TIB bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF837BDB 9090591 ENCODE Processing Pipeline c648b4b7b715f108faef3671904e4986 https://www.encodeproject.org/files/ENCFF699TIB/@@download/ENCFF699TIB.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF518ATL bigWig fold change over control ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF357MHM, ENCFF491EUN 270730016 ENCODE Processing Pipeline 8ee5564f175c44edf35a160c43a8d06c https://www.encodeproject.org/files/ENCFF518ATL/@@download/ENCFF518ATL.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF373XQT bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF951BWR 10761734 ENCODE Processing Pipeline f698d04b9dad85e5950ba026b58a9db9 https://www.encodeproject.org/files/ENCFF373XQT/@@download/ENCFF373XQT.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF623EST bed narrowPeak conservative idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF028OCG, ENCFF837BDB, ENCFF951BWR 188455 ENCODE Processing Pipeline 1d4b58167f41b3310c71282b71aa46f4 https://www.encodeproject.org/files/ENCFF623EST/@@download/ENCFF623EST.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF248HIX bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF357MHM, ENCFF491EUN 5025965 ENCODE Processing Pipeline 0d0814783a85a290d472d57def0d2436 https://www.encodeproject.org/files/ENCFF248HIX/@@download/ENCFF248HIX.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF004AAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF623EST 370180 ENCODE Processing Pipeline 1f5f6e5c60252691ff8fe6c429399ea1 https://www.encodeproject.org/files/ENCFF004AAQ/@@download/ENCFF004AAQ.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF353EUL bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF491EUN 3760623 ENCODE Processing Pipeline bff80b3a99f1509fa4da5df2fb0ab5a4 https://www.encodeproject.org/files/ENCFF353EUL/@@download/ENCFF353EUL.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF243XZA bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF357MHM 3245727 ENCODE Processing Pipeline 68f8566686dcaf7ecb35b1020c39101c https://www.encodeproject.org/files/ENCFF243XZA/@@download/ENCFF243XZA.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF387LTN bed narrowPeak optimal idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF028OCG, ENCFF837BDB, ENCFF951BWR 214182 ENCODE Processing Pipeline 7f880cffb36b0f56b3b62739e6b4b1b4 https://www.encodeproject.org/files/ENCFF387LTN/@@download/ENCFF387LTN.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF768ALO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF387LTN 406827 ENCODE Processing Pipeline 0aeecfcc5580e7fa85e0caebb44a3bd8 https://www.encodeproject.org/files/ENCFF768ALO/@@download/ENCFF768ALO.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF364QQQ bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF243XZA 7074597 ENCODE Processing Pipeline 109c55880aa318d6d2e72203b9d9054b https://www.encodeproject.org/files/ENCFF364QQQ/@@download/ENCFF364QQQ.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF796XZC bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353EUL 8993199 ENCODE Processing Pipeline bdf217614facc0bca93376d603ea8843 https://www.encodeproject.org/files/ENCFF796XZC/@@download/ENCFF796XZC.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF310ZOF bigBed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF248HIX 10756782 ENCODE Processing Pipeline 041ae504c3a35cc0b9b0487957669b88 https://www.encodeproject.org/files/ENCFF310ZOF/@@download/ENCFF310ZOF.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF120IMP bed narrowPeak conservative idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF243XZA, ENCFF248HIX, ENCFF353EUL, ENCFF419RSJ 187993 ENCODE Processing Pipeline 8fb1589bebc85e1feca2ade17dc30c5e https://www.encodeproject.org/files/ENCFF120IMP/@@download/ENCFF120IMP.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF339AQP bed narrowPeak optimal idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF243XZA, ENCFF248HIX, ENCFF353EUL, ENCFF419RSJ 213482 ENCODE Processing Pipeline 07ed17fb6c01e4e0b15d825fe992e974 https://www.encodeproject.org/files/ENCFF339AQP/@@download/ENCFF339AQP.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF730YLS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120IMP 369479 ENCODE Processing Pipeline bac7985c701a357bd37b659eb3b152eb https://www.encodeproject.org/files/ENCFF730YLS/@@download/ENCFF730YLS.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF460TID bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF339AQP 405482 ENCODE Processing Pipeline 665842b5a1ccf0c7f8ec71edf1cdac03 https://www.encodeproject.org/files/ENCFF460TID/@@download/ENCFF460TID.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000PXS bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PYD 770601804 Richard Myers, HAIB 2a9f709c235dcc838c035503e2c742bd https://www.encodeproject.org/files/ENCFF000PXS/@@download/ENCFF000PXS.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PXT bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PYJ 1095263144 Richard Myers, HAIB 59fc32ff2c5988b29fec74a3b97b842f https://www.encodeproject.org/files/ENCFF000PXT/@@download/ENCFF000PXT.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PXV bigBed broadPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UJL 1037259 Richard Myers, HAIB d085e3040772d85d0bda634d6ee0eb9c https://www.encodeproject.org/files/ENCFF000PXV/@@download/ENCFF000PXV.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PXX bigBed broadPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UJM 990307 Richard Myers, HAIB 1e77d06eec04682789befa5612ef6ebb https://www.encodeproject.org/files/ENCFF000PXX/@@download/ENCFF000PXX.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PYA bigWig raw signal ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 93203185 Richard Myers, HAIB 64972e0aa9b844e1fe02ee6bf01e5841 https://www.encodeproject.org/files/ENCFF000PYA/@@download/ENCFF000PYA.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PYB bigWig raw signal ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 37746731 Richard Myers, HAIB f37b17ce52368968d27284ae5b62a8fb https://www.encodeproject.org/files/ENCFF000PYB/@@download/ENCFF000PYB.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000PYD fastq reads ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 691541138 Richard Myers, HAIB de9544df67ea4fb551faa82a4e0962f1 https://www.encodeproject.org/files/ENCFF000PYD/@@download/ENCFF000PYD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEU/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PYJ fastq reads ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1126063251 Richard Myers, HAIB 8b2467cdbee1eddb94f48d537271dc5a https://www.encodeproject.org/files/ENCFF000PYJ/@@download/ENCFF000PYJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UJL bed broadPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 712783 Richard Myers, HAIB d48bb62e6f61c79a64d8a4a277d0873a https://www.encodeproject.org/files/ENCFF001UJL/@@download/ENCFF001UJL.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UJM bed broadPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF000PXT 618583 Richard Myers, HAIB 192c6cd042b8dc7ecafa5dcaca4aea57 https://www.encodeproject.org/files/ENCFF001UJM/@@download/ENCFF001UJM.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF002CLS bed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 892491 ENCODE Consortium Analysis Working Group 749db3fdd18af5e96e12683dc67852b6 https://www.encodeproject.org/files/ENCFF002CLS/@@download/ENCFF002CLS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF914TDH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CLS 1931026 ENCODE Consortium 9d9264405df2795cdc552890e53e4e1f https://www.encodeproject.org/files/ENCFF914TDH/@@download/ENCFF914TDH.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF691BQZ bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PYJ, ENCFF643CGH 630218936 ENCODE Processing Pipeline a533e02db31afe010b09e75237213d39 https://www.encodeproject.org/files/ENCFF691BQZ/@@download/ENCFF691BQZ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF552MDV bam unfiltered alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PYJ, ENCFF643CGH 1185097709 ENCODE Processing Pipeline 916ac66c2106e24f63fb992c970deed9 https://www.encodeproject.org/files/ENCFF552MDV/@@download/ENCFF552MDV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF108YVY bam unfiltered alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PYD, ENCFF643CGH 814025289 ENCODE Processing Pipeline cc08bb682c5869614975a0a294935c75 https://www.encodeproject.org/files/ENCFF108YVY/@@download/ENCFF108YVY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF391HFU bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PYD, ENCFF643CGH 305672367 ENCODE Processing Pipeline bf3c95bde51a6c7ed5e656da66a76b1c https://www.encodeproject.org/files/ENCFF391HFU/@@download/ENCFF391HFU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF938RUC bigWig signal p-value ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF691BQZ, ENCFF913HVS 477896707 ENCODE Processing Pipeline f45dcce0b2b2432e25f96222186d5dd2 https://www.encodeproject.org/files/ENCFF938RUC/@@download/ENCFF938RUC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF636ARX bigWig signal p-value ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF234NVU, ENCFF391HFU, ENCFF691BQZ, ENCFF913HVS 633548092 ENCODE Processing Pipeline 65b925dc9fa7cc2e24bdc4a67670fdef https://www.encodeproject.org/files/ENCFF636ARX/@@download/ENCFF636ARX.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF952VWD bigWig fold change over control ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234NVU, ENCFF391HFU 141975132 ENCODE Processing Pipeline 2bd75b70c9c56041292c75cff9a08290 https://www.encodeproject.org/files/ENCFF952VWD/@@download/ENCFF952VWD.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF320OVF bigWig fold change over control ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF691BQZ, ENCFF913HVS 308123571 ENCODE Processing Pipeline 43c4b51d4110b2d74cf838f77c9a016a https://www.encodeproject.org/files/ENCFF320OVF/@@download/ENCFF320OVF.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF679MHC bigWig signal p-value ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234NVU, ENCFF391HFU 294709660 ENCODE Processing Pipeline d4d9fabc1e36606e8e08553c33b12779 https://www.encodeproject.org/files/ENCFF679MHC/@@download/ENCFF679MHC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF233ZLL bigWig fold change over control ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF234NVU, ENCFF391HFU, ENCFF691BQZ, ENCFF913HVS 512968255 ENCODE Processing Pipeline ca225ac6f4421ecf361e2c6df7ac5a75 https://www.encodeproject.org/files/ENCFF233ZLL/@@download/ENCFF233ZLL.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF349NJE bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF234NVU, ENCFF391HFU, ENCFF691BQZ, ENCFF913HVS 5145036 ENCODE Processing Pipeline 7ae05f4b87eb1b8b16ceaa490a09d31d https://www.encodeproject.org/files/ENCFF349NJE/@@download/ENCFF349NJE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF667VJC bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF691BQZ, ENCFF913HVS 4336302 ENCODE Processing Pipeline dda20a17ec0748c3d2c9adee1841e951 https://www.encodeproject.org/files/ENCFF667VJC/@@download/ENCFF667VJC.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF226OEB bigBed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF349NJE 11524548 ENCODE Processing Pipeline 1dd576f82dbb6452b54c8a59229ed901 https://www.encodeproject.org/files/ENCFF226OEB/@@download/ENCFF226OEB.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF400VVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF119XFJ 1398588 ENCODE Processing Pipeline d7d30e2198d7fad8df29b681fd0dc05d https://www.encodeproject.org/files/ENCFF400VVQ/@@download/ENCFF400VVQ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF822CTO bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234NVU, ENCFF391HFU 3326942 ENCODE Processing Pipeline df0bd3dad982550d48aed690ce4afe47 https://www.encodeproject.org/files/ENCFF822CTO/@@download/ENCFF822CTO.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF351LVG bigBed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF667VJC 10630133 ENCODE Processing Pipeline 3bb16d97f8236aab89219b64bc497e65 https://www.encodeproject.org/files/ENCFF351LVG/@@download/ENCFF351LVG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF101MTI bed narrowPeak conservative idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF349NJE, ENCFF419RSJ, ENCFF667VJC, ENCFF822CTO 695018 ENCODE Processing Pipeline 5f488b52e2d086ba8f2d1a0a064d3b02 https://www.encodeproject.org/files/ENCFF101MTI/@@download/ENCFF101MTI.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF119XFJ bed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF349NJE, ENCFF419RSJ, ENCFF667VJC, ENCFF822CTO 801899 ENCODE Processing Pipeline d188231ecd51e08a69f22a2b2faf23f6 https://www.encodeproject.org/files/ENCFF119XFJ/@@download/ENCFF119XFJ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF723ENR bigBed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF822CTO 8031447 ENCODE Processing Pipeline e773346569a3af543b52531d88b93e50 https://www.encodeproject.org/files/ENCFF723ENR/@@download/ENCFF723ENR.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF170OHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF101MTI 1255023 ENCODE Processing Pipeline bf56b75d56cea68c9bd0a4c9375af79d https://www.encodeproject.org/files/ENCFF170OHJ/@@download/ENCFF170OHJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF793JSR bam unfiltered alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PYD, ENCFF807MUK 812512283 ENCODE Processing Pipeline fd004a11fc40ae718e01e83fef215866 https://www.encodeproject.org/files/ENCFF793JSR/@@download/ENCFF793JSR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF146HTM bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PYD, ENCFF807MUK 306007950 ENCODE Processing Pipeline eda5b6d156cf262e706afa72a476bac1 https://www.encodeproject.org/files/ENCFF146HTM/@@download/ENCFF146HTM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF866NKL bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PYJ, ENCFF807MUK 630671315 ENCODE Processing Pipeline 90c3098dbefe8da0745bb40bae6c4999 https://www.encodeproject.org/files/ENCFF866NKL/@@download/ENCFF866NKL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF823ECV bam unfiltered alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PYJ, ENCFF807MUK 1180524569 ENCODE Processing Pipeline f2c9fd9f507dbbbd8efb5704a85c0e67 https://www.encodeproject.org/files/ENCFF823ECV/@@download/ENCFF823ECV.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF699AUL bigBed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF443OXB 10584572 ENCODE Processing Pipeline 2e730d01cd15dc612ddf3779beb613a6 https://www.encodeproject.org/files/ENCFF699AUL/@@download/ENCFF699AUL.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF681OMH bed narrowPeak conservative idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF235AXH, ENCFF443OXB, ENCFF815GMT 694376 ENCODE Processing Pipeline fa6e913bb60c8122dd1cb50b0bf1042c https://www.encodeproject.org/files/ENCFF681OMH/@@download/ENCFF681OMH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF965ZKU bigWig fold change over control ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF701KUD, ENCFF866NKL 309775991 ENCODE Processing Pipeline 891020fcc5d27900947a71d6200144b1 https://www.encodeproject.org/files/ENCFF965ZKU/@@download/ENCFF965ZKU.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF224HUY bigBed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF235AXH 8043659 ENCODE Processing Pipeline f1a8d6284393728e3b6004866d537a22 https://www.encodeproject.org/files/ENCFF224HUY/@@download/ENCFF224HUY.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF085HTY bed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF235AXH, ENCFF443OXB, ENCFF815GMT 795526 ENCODE Processing Pipeline ef53728caa8d0b461eed1f1fd335edf4 https://www.encodeproject.org/files/ENCFF085HTY/@@download/ENCFF085HTY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF609SWF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF085HTY 1385237 ENCODE Processing Pipeline f1aa40fb1a80d5b8d906861aaf58e89f https://www.encodeproject.org/files/ENCFF609SWF/@@download/ENCFF609SWF.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF197NRP bigWig signal p-value ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF146HTM, ENCFF585PFH 282193509 ENCODE Processing Pipeline 70f2be375d5ae7b42601a668d5dd6d1c https://www.encodeproject.org/files/ENCFF197NRP/@@download/ENCFF197NRP.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF235AXH bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF146HTM, ENCFF585PFH 3326792 ENCODE Processing Pipeline 1607a273700f6eefef836f47e175b8d9 https://www.encodeproject.org/files/ENCFF235AXH/@@download/ENCFF235AXH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF319SOQ bigBed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF815GMT 11519647 ENCODE Processing Pipeline 555d0989179a56da40046e5b3117baf2 https://www.encodeproject.org/files/ENCFF319SOQ/@@download/ENCFF319SOQ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF800LND bigWig fold change over control ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF146HTM, ENCFF585PFH 142260004 ENCODE Processing Pipeline 53ac0ab2da61caa1736992c7b22eb8b1 https://www.encodeproject.org/files/ENCFF800LND/@@download/ENCFF800LND.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF910QVN bigWig signal p-value ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF146HTM, ENCFF585PFH, ENCFF701KUD, ENCFF866NKL 608662342 ENCODE Processing Pipeline bdbc86d21c79520a7c439ba64c386edb https://www.encodeproject.org/files/ENCFF910QVN/@@download/ENCFF910QVN.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF647TFD bigWig signal p-value ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF701KUD, ENCFF866NKL 386916424 ENCODE Processing Pipeline ea56022ff5022cd81ba65511b953b9a8 https://www.encodeproject.org/files/ENCFF647TFD/@@download/ENCFF647TFD.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF014YLT bigWig fold change over control ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF146HTM, ENCFF585PFH, ENCFF701KUD, ENCFF866NKL 519344103 ENCODE Processing Pipeline 2fcde3af1d9e9f5cba762c9a77b787d4 https://www.encodeproject.org/files/ENCFF014YLT/@@download/ENCFF014YLT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF443OXB bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF701KUD, ENCFF866NKL 4310832 ENCODE Processing Pipeline a765467f07d8ac9c4e8183b883573cd7 https://www.encodeproject.org/files/ENCFF443OXB/@@download/ENCFF443OXB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF815GMT bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF146HTM, ENCFF585PFH, ENCFF701KUD, ENCFF866NKL 5176464 ENCODE Processing Pipeline ce6a3b47124cbd6d40e1150798e5b492 https://www.encodeproject.org/files/ENCFF815GMT/@@download/ENCFF815GMT.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF189UCA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF681OMH 1249417 ENCODE Processing Pipeline 64ddc36f222bec6ed15948051ff8c19c https://www.encodeproject.org/files/ENCFF189UCA/@@download/ENCFF189UCA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000ZRD bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VQZ 957072 Michael Snyder, Stanford 6495d9a72321284cbe9a3202abf884b4 https://www.encodeproject.org/files/ENCFF000ZRD/@@download/ENCFF000ZRD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZRE fastq reads ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1083545769 Michael Snyder, Stanford a235cffe173b17aba491fc0c92672c5b https://www.encodeproject.org/files/ENCFF000ZRE/@@download/ENCFF000ZRE.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQO/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZRG fastq reads ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 986663941 Michael Snyder, Stanford f4312f611dd39dfd023e53e480a51b8d https://www.encodeproject.org/files/ENCFF000ZRG/@@download/ENCFF000ZRG.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQQ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZRI bigWig signal ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 637983197 Michael Snyder, Stanford 42163319f48b0d87ed7268fd3e98986a https://www.encodeproject.org/files/ENCFF000ZRI/@@download/ENCFF000ZRI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZRJ bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 1 548589968 Michael Snyder, Stanford cc104b81cbb52eea2c83c5f553363107 https://www.encodeproject.org/files/ENCFF000ZRJ/@@download/ENCFF000ZRJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZRK bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 1 1371260130 Michael Snyder, Stanford f9aa208de97f05c08f3a42bac8e307a6 https://www.encodeproject.org/files/ENCFF000ZRK/@@download/ENCFF000ZRK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VQZ bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 422607 Michael Snyder, Stanford f493285322f4507cf487af7bc1ddceb3 https://www.encodeproject.org/files/ENCFF001VQZ/@@download/ENCFF001VQZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF349TVK bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZRG, ENCFF643CGH 727711855 ENCODE Processing Pipeline 9870b125167687ffc4890acd962e8ebe https://www.encodeproject.org/files/ENCFF349TVK/@@download/ENCFF349TVK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF277EQB bam unfiltered alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZRG, ENCFF643CGH 1087811787 ENCODE Processing Pipeline 156b4d0a94d433b5280f23d3a758c580 https://www.encodeproject.org/files/ENCFF277EQB/@@download/ENCFF277EQB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF955PGN bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZRE, ENCFF643CGH 958355511 ENCODE Processing Pipeline 5913f6d45bcbd0d16d01602d62a762da https://www.encodeproject.org/files/ENCFF955PGN/@@download/ENCFF955PGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF828EYM bam unfiltered alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZRE, ENCFF643CGH 1367973255 ENCODE Processing Pipeline 3d03a1307d1967b9eb51064f238ea524 https://www.encodeproject.org/files/ENCFF828EYM/@@download/ENCFF828EYM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF465CCW bam unfiltered alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZRG, ENCFF807MUK 1083674548 ENCODE Processing Pipeline 79a54bade32a817107f00502e84dab67 https://www.encodeproject.org/files/ENCFF465CCW/@@download/ENCFF465CCW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF392JWS bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZRE, ENCFF807MUK 958593000 ENCODE Processing Pipeline ac1fbab3a63ed1f1fa9c5a28b02828f6 https://www.encodeproject.org/files/ENCFF392JWS/@@download/ENCFF392JWS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF883WOD bam unfiltered alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZRE, ENCFF807MUK 1363284082 ENCODE Processing Pipeline 4f21e9e5492a6ccdef542caf58a8f39a https://www.encodeproject.org/files/ENCFF883WOD/@@download/ENCFF883WOD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF749FQP bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZRG, ENCFF807MUK 728033363 ENCODE Processing Pipeline 14c11007a7ac4d7c436a5727f0db8ae7 https://www.encodeproject.org/files/ENCFF749FQP/@@download/ENCFF749FQP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF136WIQ bigWig signal p-value ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF955PGN 528205682 ENCODE Processing Pipeline 4cb880e3be4178e09bae3e8ba2eb3203 https://www.encodeproject.org/files/ENCFF136WIQ/@@download/ENCFF136WIQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF823PCW bigWig signal p-value ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF349TVK 548154802 ENCODE Processing Pipeline 3dbafa6521210825d622b64a496b7119 https://www.encodeproject.org/files/ENCFF823PCW/@@download/ENCFF823PCW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF470CFY bigWig fold change over control ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF349TVK, ENCFF955PGN 733302571 ENCODE Processing Pipeline eb6252987edc40da276992d00b6e14de https://www.encodeproject.org/files/ENCFF470CFY/@@download/ENCFF470CFY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF400RCO bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF232YBY 13342603 ENCODE Processing Pipeline 0e0ff48ea9c2e3cf6d61098234e395c3 https://www.encodeproject.org/files/ENCFF400RCO/@@download/ENCFF400RCO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF030DAG bed narrowPeak conservative idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF232YBY, ENCFF325OED, ENCFF419RSJ, ENCFF497SIN 587971 ENCODE Processing Pipeline bec83f8e1d11addb6d5c4aa09e5c6afd https://www.encodeproject.org/files/ENCFF030DAG/@@download/ENCFF030DAG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF240HOE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF030DAG 1344828 ENCODE Processing Pipeline 6c3659775b4d9880bb88be1ec1b29fc5 https://www.encodeproject.org/files/ENCFF240HOE/@@download/ENCFF240HOE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF522GFT bigWig signal p-value ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF349TVK, ENCFF955PGN 611077408 ENCODE Processing Pipeline 2248f977de18394dc186f69873eb5d98 https://www.encodeproject.org/files/ENCFF522GFT/@@download/ENCFF522GFT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF497SIN bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF349TVK 5573891 ENCODE Processing Pipeline 229b92a98006c7a0f3a2ccf8677df4f6 https://www.encodeproject.org/files/ENCFF497SIN/@@download/ENCFF497SIN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF325OED bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF349TVK, ENCFF955PGN 6627475 ENCODE Processing Pipeline d2228da65690a39db5c1f701abc1051a https://www.encodeproject.org/files/ENCFF325OED/@@download/ENCFF325OED.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF126NJN bigWig fold change over control ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF955PGN 466808334 ENCODE Processing Pipeline 8fc8bf16607477f8e23d3fc56d5a4035 https://www.encodeproject.org/files/ENCFF126NJN/@@download/ENCFF126NJN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF232YBY bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF955PGN 6197368 ENCODE Processing Pipeline 1fd8fa20bbd3bb48d90d48f23a818b42 https://www.encodeproject.org/files/ENCFF232YBY/@@download/ENCFF232YBY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF765ECX bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF325OED 13403346 ENCODE Processing Pipeline 2c9ebd3eb05a70a013093a663f64ccaa https://www.encodeproject.org/files/ENCFF765ECX/@@download/ENCFF765ECX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF114GTL bigWig fold change over control ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF349TVK 411782578 ENCODE Processing Pipeline d109572a5ed9aa399e33fe224c41209a https://www.encodeproject.org/files/ENCFF114GTL/@@download/ENCFF114GTL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF771IEI bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF497SIN 13325012 ENCODE Processing Pipeline 51b8c221eb6cfdd1fc0b06d8d8cc44f9 https://www.encodeproject.org/files/ENCFF771IEI/@@download/ENCFF771IEI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF116RCK bed narrowPeak optimal idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF232YBY, ENCFF325OED, ENCFF419RSJ, ENCFF497SIN 692044 ENCODE Processing Pipeline d079cf3da9df7a371b5e530f5115a955 https://www.encodeproject.org/files/ENCFF116RCK/@@download/ENCFF116RCK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF797UKS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116RCK 1529984 ENCODE Processing Pipeline bdc98d0584485f9f29016817410de96d https://www.encodeproject.org/files/ENCFF797UKS/@@download/ENCFF797UKS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF004PGR bigWig fold change over control ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF749FQP 406840182 ENCODE Processing Pipeline f7636a85d6df728ffbebf5d0948d8c0e https://www.encodeproject.org/files/ENCFF004PGR/@@download/ENCFF004PGR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF850ODS bigWig fold change over control ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP, ENCFF749FQP 734122171 ENCODE Processing Pipeline a0382b33293249c95e055c602f6f52b6 https://www.encodeproject.org/files/ENCFF850ODS/@@download/ENCFF850ODS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF212TAW bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF970VRK 13396104 ENCODE Processing Pipeline 695d17980784514ae31b463db6f9f0a8 https://www.encodeproject.org/files/ENCFF212TAW/@@download/ENCFF212TAW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF539SEV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF265QRY 1549783 ENCODE Processing Pipeline 7e800f6da89807cfe227b877c1b2199f https://www.encodeproject.org/files/ENCFF539SEV/@@download/ENCFF539SEV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF776IXN bigWig fold change over control ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP 470818491 ENCODE Processing Pipeline 5b5913c53cfea7bbf13bd3677e0bce43 https://www.encodeproject.org/files/ENCFF776IXN/@@download/ENCFF776IXN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF428ZFF bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF194TDU 13347048 ENCODE Processing Pipeline 86ae6aba78e196dfe90e5ef3f392f714 https://www.encodeproject.org/files/ENCFF428ZFF/@@download/ENCFF428ZFF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF705PML bigBed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF371MFR 13318640 ENCODE Processing Pipeline 6f9ebbd7bd23f1c81033600beba767d8 https://www.encodeproject.org/files/ENCFF705PML/@@download/ENCFF705PML.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF970VRK bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP, ENCFF749FQP 6629775 ENCODE Processing Pipeline 5e038748337c9c1d2e8898b1d72488d4 https://www.encodeproject.org/files/ENCFF970VRK/@@download/ENCFF970VRK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF707ZEX bed narrowPeak conservative idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF194TDU, ENCFF371MFR, ENCFF970VRK 593272 ENCODE Processing Pipeline 9649fa30ff12af9b5eb88d06cca5df43 https://www.encodeproject.org/files/ENCFF707ZEX/@@download/ENCFF707ZEX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF265QRY bed narrowPeak optimal idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF194TDU, ENCFF371MFR, ENCFF970VRK 704022 ENCODE Processing Pipeline 3d45d307ba38c7aae59c8bf33021fc47 https://www.encodeproject.org/files/ENCFF265QRY/@@download/ENCFF265QRY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF371MFR bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF749FQP 5585027 ENCODE Processing Pipeline bce3f2a863bb75de6f0b4b62d6677066 https://www.encodeproject.org/files/ENCFF371MFR/@@download/ENCFF371MFR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF207WNC bigWig signal p-value ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP 526001087 ENCODE Processing Pipeline 1d5f6b0eb2bd096ae906180a90ac6944 https://www.encodeproject.org/files/ENCFF207WNC/@@download/ENCFF207WNC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF392WJQ bigWig signal p-value ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF749FQP 480572318 ENCODE Processing Pipeline f062cc19aef9a7177bb5416e9379db2e https://www.encodeproject.org/files/ENCFF392WJQ/@@download/ENCFF392WJQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF498YLY bigWig signal p-value ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP, ENCFF749FQP 618859669 ENCODE Processing Pipeline d3f18a138e0e13f7a101c8fbfaa66d6d https://www.encodeproject.org/files/ENCFF498YLY/@@download/ENCFF498YLY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF194TDU bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP 6203326 ENCODE Processing Pipeline 33a874820969f709e61964b9aacd2a0f https://www.encodeproject.org/files/ENCFF194TDU/@@download/ENCFF194TDU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF538OGA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF707ZEX 1352114 ENCODE Processing Pipeline 58566747e48bd7ae0022cf1d113e4d23 https://www.encodeproject.org/files/ENCFF538OGA/@@download/ENCFF538OGA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PMO bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PMZ 965328968 Richard Myers, HAIB 0fae77ec60cf75a6ea73e83d7f39bfd3 https://www.encodeproject.org/files/ENCFF000PMO/@@download/ENCFF000PMO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PMP bigBed broadPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHA 565313 Richard Myers, HAIB 5ed0a3287c406c5917fe594ee65746ea https://www.encodeproject.org/files/ENCFF000PMP/@@download/ENCFF000PMP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PMQ bigBed broadPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHB 826914 Richard Myers, HAIB b57eebc4ece9840c08346170133d5601 https://www.encodeproject.org/files/ENCFF000PMQ/@@download/ENCFF000PMQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PMR bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PNA 1147567157 Richard Myers, HAIB 43dfd582adaed8d5a450f81e827ff7cc https://www.encodeproject.org/files/ENCFF000PMR/@@download/ENCFF000PMR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PMS bigWig raw signal ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 23055356 Richard Myers, HAIB 5b8b52d1688bd6bdb62e58473937b840 https://www.encodeproject.org/files/ENCFF000PMS/@@download/ENCFF000PMS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000PMT bigWig raw signal ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 26518547 Richard Myers, HAIB d93a735595f5f1addc30033c49e69dae https://www.encodeproject.org/files/ENCFF000PMT/@@download/ENCFF000PMT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PMZ fastq reads ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 877806675 Richard Myers, HAIB f79aec96c013042b98d554301f07ce4d https://www.encodeproject.org/files/ENCFF000PMZ/@@download/ENCFF000PMZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNA fastq reads ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1049939264 Richard Myers, HAIB b847c7e02bd450d79c3027f5d2e12155 https://www.encodeproject.org/files/ENCFF000PNA/@@download/ENCFF000PNA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UHA bed broadPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 341090 Richard Myers, HAIB 073190c3926d5be0a05c0e4c3998497f https://www.encodeproject.org/files/ENCFF001UHA/@@download/ENCFF001UHA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UHB bed broadPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 408531 Richard Myers, HAIB e6fab04d0f65cae0a91276051353f5b5 https://www.encodeproject.org/files/ENCFF001UHB/@@download/ENCFF001UHB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CKV bed narrowPeak optimal idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 652956 ENCODE Consortium Analysis Working Group 551ba2c2a796f4754ea17a42edf95bd9 https://www.encodeproject.org/files/ENCFF002CKV/@@download/ENCFF002CKV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF567QUK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKV 1507541 ENCODE Consortium 5f850e17cbf41cbb89f870ae6fcd96d8 https://www.encodeproject.org/files/ENCFF567QUK/@@download/ENCFF567QUK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF432SGP bam unfiltered alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMZ, ENCFF643CGH 1139159842 ENCODE Processing Pipeline 2f88cfd1e22487f39e1ec3789b6a78be https://www.encodeproject.org/files/ENCFF432SGP/@@download/ENCFF432SGP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF522HWT bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMZ, ENCFF643CGH 629313007 ENCODE Processing Pipeline 2e069292d78c6bd361d1238ebf2d1ba9 https://www.encodeproject.org/files/ENCFF522HWT/@@download/ENCFF522HWT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF246IMM bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNA, ENCFF643CGH 915577136 ENCODE Processing Pipeline 6b909ea1d8c4ae5213c2b32b8a561397 https://www.encodeproject.org/files/ENCFF246IMM/@@download/ENCFF246IMM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF035CSV bam unfiltered alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNA, ENCFF643CGH 1393233236 ENCODE Processing Pipeline fbd008ed02a48d8fab4c089f9d2e3cb1 https://www.encodeproject.org/files/ENCFF035CSV/@@download/ENCFF035CSV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF219HMK bam unfiltered alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMZ, ENCFF807MUK 1134968717 ENCODE Processing Pipeline 1a101ad02c2627ec868cd8b00da0f772 https://www.encodeproject.org/files/ENCFF219HMK/@@download/ENCFF219HMK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF373JKP bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMZ, ENCFF807MUK 629664344 ENCODE Processing Pipeline 1465cd5a3cae91c83ea71c9af8ab4b8d https://www.encodeproject.org/files/ENCFF373JKP/@@download/ENCFF373JKP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF581OIB bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNA, ENCFF807MUK 915914626 ENCODE Processing Pipeline 82247508f2d9afd0b03e0fb4cc2c5189 https://www.encodeproject.org/files/ENCFF581OIB/@@download/ENCFF581OIB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF561DCM bam unfiltered alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNA, ENCFF807MUK 1389531512 ENCODE Processing Pipeline f9c7ef70e8387860e4370f567c31dce4 https://www.encodeproject.org/files/ENCFF561DCM/@@download/ENCFF561DCM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF163CZB bigWig signal p-value ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF522HWT 513421003 ENCODE Processing Pipeline dc81574ed16c1beae59b71adae44e851 https://www.encodeproject.org/files/ENCFF163CZB/@@download/ENCFF163CZB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF646MYY bigWig signal p-value ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF246IMM, ENCFF285LVE 462050196 ENCODE Processing Pipeline bc561976908ed9c3f5de4cc995d118c1 https://www.encodeproject.org/files/ENCFF646MYY/@@download/ENCFF646MYY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF555PAU bigWig signal p-value ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF246IMM, ENCFF285LVE, ENCFF522HWT 547366184 ENCODE Processing Pipeline f44bbe8b217af2b616da34d2a82186fa https://www.encodeproject.org/files/ENCFF555PAU/@@download/ENCFF555PAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF885QMD bigWig fold change over control ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF246IMM, ENCFF285LVE 444119655 ENCODE Processing Pipeline c3d01284f1282bbe2bd3f0627a1deafd https://www.encodeproject.org/files/ENCFF885QMD/@@download/ENCFF885QMD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF952OBS bigWig fold change over control ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF522HWT 335737383 ENCODE Processing Pipeline f339c1db61a1a144b82d907098a5b33e https://www.encodeproject.org/files/ENCFF952OBS/@@download/ENCFF952OBS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF552BPU bigBed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF213VZV 10842629 ENCODE Processing Pipeline dba6f8aabbac3722fc3487aa2b541e32 https://www.encodeproject.org/files/ENCFF552BPU/@@download/ENCFF552BPU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF023LJV bed narrowPeak conservative idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF009RZY, ENCFF213VZV, ENCFF411ZQT, ENCFF419RSJ 439387 ENCODE Processing Pipeline 46adc32784a5cdba0cee185d374e45a5 https://www.encodeproject.org/files/ENCFF023LJV/@@download/ENCFF023LJV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF071VVA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF023LJV 927579 ENCODE Processing Pipeline db66114997dbfdef8affe83ce4fa2335 https://www.encodeproject.org/files/ENCFF071VVA/@@download/ENCFF071VVA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF772VBV bigWig fold change over control ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF246IMM, ENCFF285LVE, ENCFF522HWT 667698621 ENCODE Processing Pipeline d16dde9c84778af1b93feae9a83e24f6 https://www.encodeproject.org/files/ENCFF772VBV/@@download/ENCFF772VBV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF411ZQT bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF246IMM, ENCFF285LVE 5419355 ENCODE Processing Pipeline 61a6a91d03347f4fed77277409d7648d https://www.encodeproject.org/files/ENCFF411ZQT/@@download/ENCFF411ZQT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF674QCU bed narrowPeak optimal idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF009RZY, ENCFF213VZV, ENCFF411ZQT, ENCFF419RSJ 545544 ENCODE Processing Pipeline 32f605c61fc03fcc61b819ed18cf7257 https://www.encodeproject.org/files/ENCFF674QCU/@@download/ENCFF674QCU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF009RZY bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF246IMM, ENCFF285LVE, ENCFF522HWT 5905830 ENCODE Processing Pipeline 96142ec6a229c5877bb208b516c2c54f https://www.encodeproject.org/files/ENCFF009RZY/@@download/ENCFF009RZY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF665WOY bigBed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF411ZQT 13135381 ENCODE Processing Pipeline f97bfadbdb361a9a8f84ff67bdef92aa https://www.encodeproject.org/files/ENCFF665WOY/@@download/ENCFF665WOY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF648UFU bigBed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF009RZY 13505650 ENCODE Processing Pipeline 6a977df1b23fded23e44bb31886a61c5 https://www.encodeproject.org/files/ENCFF648UFU/@@download/ENCFF648UFU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF213VZV bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF522HWT 4787951 ENCODE Processing Pipeline 28d17cd40a66ae66f11a11fcdf782986 https://www.encodeproject.org/files/ENCFF213VZV/@@download/ENCFF213VZV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF805JLO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF674QCU 1098591 ENCODE Processing Pipeline 6888f2510a8d29dd164d2b28ad33b6d7 https://www.encodeproject.org/files/ENCFF805JLO/@@download/ENCFF805JLO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF207XFY bigWig fold change over control ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF581OIB 444436971 ENCODE Processing Pipeline fb602a05499d2c8f246489f9fa5b5651 https://www.encodeproject.org/files/ENCFF207XFY/@@download/ENCFF207XFY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF908HDQ bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF373JKP, ENCFF581OIB 5907185 ENCODE Processing Pipeline d8441b04dad51736f52227c5ce9b331e https://www.encodeproject.org/files/ENCFF908HDQ/@@download/ENCFF908HDQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF321BYG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF811CMJ 926429 ENCODE Processing Pipeline 5b40cf88c28355566a26562d49d17c54 https://www.encodeproject.org/files/ENCFF321BYG/@@download/ENCFF321BYG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF711GNA bigWig signal p-value ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF373JKP 445619371 ENCODE Processing Pipeline b87a6095b243cd348232f077c2f7e0db https://www.encodeproject.org/files/ENCFF711GNA/@@download/ENCFF711GNA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF218CEG bigWig fold change over control ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF373JKP 353014447 ENCODE Processing Pipeline fe2ef3f838797bd1309eed3ad1f50ee0 https://www.encodeproject.org/files/ENCFF218CEG/@@download/ENCFF218CEG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF906ESV bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF373JKP 4787613 ENCODE Processing Pipeline 9eeaf89d2ba54956f5b1a59068dc294b https://www.encodeproject.org/files/ENCFF906ESV/@@download/ENCFF906ESV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF547POU bed narrowPeak optimal idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF397JOR, ENCFF906ESV, ENCFF908HDQ 549606 ENCODE Processing Pipeline 413e4eb5d23e404dfb66b7c3d8069a71 https://www.encodeproject.org/files/ENCFF547POU/@@download/ENCFF547POU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF960HNF bigWig signal p-value ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF373JKP, ENCFF581OIB 548295740 ENCODE Processing Pipeline bb29b11d60ca3b7fa0ef421d388e1024 https://www.encodeproject.org/files/ENCFF960HNF/@@download/ENCFF960HNF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF582IFA bigWig fold change over control ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF373JKP, ENCFF581OIB 665814423 ENCODE Processing Pipeline a2eddc2b8e78ca5bc8cb704de1eb9738 https://www.encodeproject.org/files/ENCFF582IFA/@@download/ENCFF582IFA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF397JOR bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF581OIB 5439352 ENCODE Processing Pipeline 0a867320804a243e5690f3226ee3ba8c https://www.encodeproject.org/files/ENCFF397JOR/@@download/ENCFF397JOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF811CMJ bed narrowPeak conservative idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF397JOR, ENCFF906ESV, ENCFF908HDQ 438735 ENCODE Processing Pipeline 023ffc56a5c219c7fca1eafdee2943ef https://www.encodeproject.org/files/ENCFF811CMJ/@@download/ENCFF811CMJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF132ZVN bigWig signal p-value ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF581OIB 478097253 ENCODE Processing Pipeline e7590e074be2d87f32fc67a7b5e5b788 https://www.encodeproject.org/files/ENCFF132ZVN/@@download/ENCFF132ZVN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF263GFM bigBed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF906ESV 10834739 ENCODE Processing Pipeline d75c21cc027d052204b07f5b6652e900 https://www.encodeproject.org/files/ENCFF263GFM/@@download/ENCFF263GFM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF317IOU bigBed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF397JOR 13154614 ENCODE Processing Pipeline b955b8a475ffc82e7e3e9a55e29fdb50 https://www.encodeproject.org/files/ENCFF317IOU/@@download/ENCFF317IOU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF637TYJ bigBed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF908HDQ 13507160 ENCODE Processing Pipeline 09b7062f668cf83eaa8fa2a730c06b84 https://www.encodeproject.org/files/ENCFF637TYJ/@@download/ENCFF637TYJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF257WQI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF547POU 1104889 ENCODE Processing Pipeline 6c20bc5702f3c3f24fa1d362afeb7f6b https://www.encodeproject.org/files/ENCFF257WQI/@@download/ENCFF257WQI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000ZOC bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZOO 284231920 Peggy Farnham, USC 6b991261fbdeaeed090ba467ff733c2a https://www.encodeproject.org/files/ENCFF000ZOC/@@download/ENCFF000ZOC.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZOD bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZOM 217500651 Peggy Farnham, USC 796a56bdf4ab9aff95a718b4db67cf2e https://www.encodeproject.org/files/ENCFF000ZOD/@@download/ENCFF000ZOD.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZOE bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQR 1170834 Peggy Farnham, USC b6f1d3012a7a3257441027555c038e4b https://www.encodeproject.org/files/ENCFF000ZOE/@@download/ENCFF000ZOE.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZOG bigWig signal ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 153883850 Peggy Farnham, USC 7aad7720d6125b73403bb9de35ddcb92 https://www.encodeproject.org/files/ENCFF000ZOG/@@download/ENCFF000ZOG.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF000ZOM fastq reads ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 789104036 Peggy Farnham, USC 943f2cfe44fb3d231381d844c1073913 https://www.encodeproject.org/files/ENCFF000ZOM/@@download/ENCFF000ZOM.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZPL/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZOO fastq reads ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 637884910 Peggy Farnham, USC 514178716d4a57184cd26dc1c7770ad2 https://www.encodeproject.org/files/ENCFF000ZOO/@@download/ENCFF000ZOO.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZPL/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001VQR bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 479357 Peggy Farnham, USC 2081119ac9c7e8b7f2e28784927e7743 https://www.encodeproject.org/files/ENCFF001VQR/@@download/ENCFF001VQR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF002CZV bed narrowPeak optimal idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 495881 ENCODE Consortium Analysis Working Group 001be63af869fbaa551e413332d0a0b0 https://www.encodeproject.org/files/ENCFF002CZV/@@download/ENCFF002CZV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF116EJH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZV 1112611 ENCODE Consortium 27c844a57b5df44be676e130ca99c5e2 https://www.encodeproject.org/files/ENCFF116EJH/@@download/ENCFF116EJH.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF845AVW bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOM, ENCFF643CGH 242718896 ENCODE Processing Pipeline bd23678aca1e32dcc5c3e0275cb5462f https://www.encodeproject.org/files/ENCFF845AVW/@@download/ENCFF845AVW.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF790KMN bam unfiltered alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOM, ENCFF643CGH 818414992 ENCODE Processing Pipeline 711ab1ccb50042de7b4e4fa1d2fcdf88 https://www.encodeproject.org/files/ENCFF790KMN/@@download/ENCFF790KMN.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF531ZMI bam unfiltered alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOO, ENCFF643CGH 702611873 ENCODE Processing Pipeline 323c245072163b16e3810a35fc3467f5 https://www.encodeproject.org/files/ENCFF531ZMI/@@download/ENCFF531ZMI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF525TNI bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOO, ENCFF643CGH 319734668 ENCODE Processing Pipeline c0f13e6749fbdfe2947c253857ce401b https://www.encodeproject.org/files/ENCFF525TNI/@@download/ENCFF525TNI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF227FQU bam unfiltered alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOO, ENCFF807MUK 700731613 ENCODE Processing Pipeline d2d6f6a88bd010478bf33dcf9501e31c https://www.encodeproject.org/files/ENCFF227FQU/@@download/ENCFF227FQU.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF781IPH bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOO, ENCFF807MUK 319923251 ENCODE Processing Pipeline 546498add3f0a8f67ee28caac364e9b3 https://www.encodeproject.org/files/ENCFF781IPH/@@download/ENCFF781IPH.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF240TUY bam unfiltered alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOM, ENCFF807MUK 816896458 ENCODE Processing Pipeline a1f242d837679a34ab0c889b1c179c7b https://www.encodeproject.org/files/ENCFF240TUY/@@download/ENCFF240TUY.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF005ZIF bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOM, ENCFF807MUK 242888278 ENCODE Processing Pipeline dcfecf5d6d2835f7e7c91fb7d8fe8ba2 https://www.encodeproject.org/files/ENCFF005ZIF/@@download/ENCFF005ZIF.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF242KQG bigWig signal p-value ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF525TNI, ENCFF893PKD 571803645 ENCODE Processing Pipeline 0bb2b5a80882e8a6e71e36719edfe41f https://www.encodeproject.org/files/ENCFF242KQG/@@download/ENCFF242KQG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF281KWH bigWig signal p-value ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF845AVW, ENCFF893PKD 495188290 ENCODE Processing Pipeline 1f185644d4c97460b701dc58b3f37742 https://www.encodeproject.org/files/ENCFF281KWH/@@download/ENCFF281KWH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF806KUU bigWig fold change over control ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF525TNI, ENCFF893PKD 354268717 ENCODE Processing Pipeline 6491766774899b141aef49d2df812ce6 https://www.encodeproject.org/files/ENCFF806KUU/@@download/ENCFF806KUU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF169DYJ bigWig signal p-value ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF525TNI, ENCFF845AVW, ENCFF893PKD 616604269 ENCODE Processing Pipeline e1178f9ac6af92a2eb846a21fe74ad29 https://www.encodeproject.org/files/ENCFF169DYJ/@@download/ENCFF169DYJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF686YRS bigWig fold change over control ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF845AVW, ENCFF893PKD 260436750 ENCODE Processing Pipeline c4bf475d0d199e7d63198adf8f992262 https://www.encodeproject.org/files/ENCFF686YRS/@@download/ENCFF686YRS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF738YHN bigWig fold change over control ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF525TNI, ENCFF845AVW, ENCFF893PKD 506179206 ENCODE Processing Pipeline 1fea7a514a67335c4349267be7b693ad https://www.encodeproject.org/files/ENCFF738YHN/@@download/ENCFF738YHN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF904HSP bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF525TNI, ENCFF845AVW, ENCFF893PKD 6255045 ENCODE Processing Pipeline d79ba84cb30b0e5ce64942187c23682d https://www.encodeproject.org/files/ENCFF904HSP/@@download/ENCFF904HSP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF289ZYB bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF525TNI, ENCFF893PKD 5898804 ENCODE Processing Pipeline 20352606f1cebea2333520583312201f https://www.encodeproject.org/files/ENCFF289ZYB/@@download/ENCFF289ZYB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF557WPE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF180BYN 1314059 ENCODE Processing Pipeline 7e501055902adc8747879ff84dbf3253 https://www.encodeproject.org/files/ENCFF557WPE/@@download/ENCFF557WPE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF799NBQ bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF845AVW, ENCFF893PKD 4658990 ENCODE Processing Pipeline 15c3195c421ef21b310e41794b42f38a https://www.encodeproject.org/files/ENCFF799NBQ/@@download/ENCFF799NBQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF958RDY bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289ZYB 12707668 ENCODE Processing Pipeline 5e0f07c6710adba50caf071a7b4a57f2 https://www.encodeproject.org/files/ENCFF958RDY/@@download/ENCFF958RDY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF294PBP bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF799NBQ 10734368 ENCODE Processing Pipeline fb88a226f73f43a64fe81d950d6936bb https://www.encodeproject.org/files/ENCFF294PBP/@@download/ENCFF294PBP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF115XBG bed narrowPeak conservative idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF289ZYB, ENCFF419RSJ, ENCFF799NBQ, ENCFF904HSP 492634 ENCODE Processing Pipeline 8e1ed16542a0066a25ff58724d5dead2 https://www.encodeproject.org/files/ENCFF115XBG/@@download/ENCFF115XBG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF989CUD bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF904HSP 12798417 ENCODE Processing Pipeline f79dc73033fb283406ce54b193371921 https://www.encodeproject.org/files/ENCFF989CUD/@@download/ENCFF989CUD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF761KHM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF115XBG 1109952 ENCODE Processing Pipeline 693e58bc609fd2bb0c4c3608d4eaeb25 https://www.encodeproject.org/files/ENCFF761KHM/@@download/ENCFF761KHM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF180BYN bed narrowPeak optimal idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF289ZYB, ENCFF419RSJ, ENCFF799NBQ, ENCFF904HSP 613920 ENCODE Processing Pipeline 2083f033652ca137d7e101eee4c19e6d https://www.encodeproject.org/files/ENCFF180BYN/@@download/ENCFF180BYN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF296IHK bigWig fold change over control ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF005ZIF, ENCFF092AFJ 259883382 ENCODE Processing Pipeline 15cf097983f19ad21cc17d8bb8c6b2f9 https://www.encodeproject.org/files/ENCFF296IHK/@@download/ENCFF296IHK.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF408REN bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF091ANC 12805627 ENCODE Processing Pipeline 3024f6f560b0c4b5c42c01796c139c31 https://www.encodeproject.org/files/ENCFF408REN/@@download/ENCFF408REN.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF535DUM bigWig signal p-value ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092AFJ, ENCFF781IPH 542511527 ENCODE Processing Pipeline 743d8b24a6647037e1c5e2ae8897f620 https://www.encodeproject.org/files/ENCFF535DUM/@@download/ENCFF535DUM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF276JSK bigWig fold change over control ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092AFJ, ENCFF781IPH 355466499 ENCODE Processing Pipeline 266d83bc529b557f2382e6ecb3c5ca23 https://www.encodeproject.org/files/ENCFF276JSK/@@download/ENCFF276JSK.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF012SQP bigWig signal p-value ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF005ZIF, ENCFF092AFJ, ENCFF781IPH 598808143 ENCODE Processing Pipeline 5038d6b90b6919ed4c2f91fc226ee2fd https://www.encodeproject.org/files/ENCFF012SQP/@@download/ENCFF012SQP.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF755XKO bigWig fold change over control ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF005ZIF, ENCFF092AFJ, ENCFF781IPH 506255807 ENCODE Processing Pipeline 5e4bc695062586a2ae99b5cbe42e1c72 https://www.encodeproject.org/files/ENCFF755XKO/@@download/ENCFF755XKO.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF931ZMO bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF372YKO 12721908 ENCODE Processing Pipeline 8ee0830ee1cc0a4984161c78ccf0b40f https://www.encodeproject.org/files/ENCFF931ZMO/@@download/ENCFF931ZMO.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF126FBH bigWig signal p-value ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF005ZIF, ENCFF092AFJ 502535160 ENCODE Processing Pipeline b012cdc65eaefc95a922c21d605e5777 https://www.encodeproject.org/files/ENCFF126FBH/@@download/ENCFF126FBH.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF091ANC bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF005ZIF, ENCFF092AFJ, ENCFF781IPH 6288438 ENCODE Processing Pipeline 5aac5234b137a04d9c2abc1c43f98de7 https://www.encodeproject.org/files/ENCFF091ANC/@@download/ENCFF091ANC.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF957CWW bed narrowPeak optimal idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF091ANC, ENCFF330USX, ENCFF372YKO 613178 ENCODE Processing Pipeline e9169de25a7d1181ae006801678cc91c https://www.encodeproject.org/files/ENCFF957CWW/@@download/ENCFF957CWW.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF372YKO bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092AFJ, ENCFF781IPH 5914331 ENCODE Processing Pipeline ebfc24572266527a081b131a5fed82fd https://www.encodeproject.org/files/ENCFF372YKO/@@download/ENCFF372YKO.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF330USX bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF005ZIF, ENCFF092AFJ 4661677 ENCODE Processing Pipeline c61287a804e07db675245f5fe75c64e5 https://www.encodeproject.org/files/ENCFF330USX/@@download/ENCFF330USX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF095RCE bigBed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF330USX 10728506 ENCODE Processing Pipeline 72ea9455110e667e2ec4cf0d3bb7be67 https://www.encodeproject.org/files/ENCFF095RCE/@@download/ENCFF095RCE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF787KOF bed narrowPeak conservative idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF091ANC, ENCFF330USX, ENCFF372YKO 495403 ENCODE Processing Pipeline 50f7cb23d2cf96b922dedb33cd6ef1d4 https://www.encodeproject.org/files/ENCFF787KOF/@@download/ENCFF787KOF.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF244VDI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF787KOF 1112351 ENCODE Processing Pipeline 6e237d3077626abaaf7254da3bc69c3b https://www.encodeproject.org/files/ENCFF244VDI/@@download/ENCFF244VDI.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF285AZE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF957CWW 1312215 ENCODE Processing Pipeline 522f7bff795dc82142bf54f308571f2c https://www.encodeproject.org/files/ENCFF285AZE/@@download/ENCFF285AZE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF956KKU fastq reads ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF957QWK 3381348310 Michael Snyder, Stanford 6d04a9ca776ac908a504ebc83de2692b SRA:SRR6212880 https://www.encodeproject.org/files/ENCFF956KKU/@@download/ENCFF956KKU.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking ENCFF666XKI fastq reads ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF059NSA 3095998628 Michael Snyder, Stanford 779d91207d9ab0d6fcdeef555063b2b9 SRA:SRR6212881 https://www.encodeproject.org/files/ENCFF666XKI/@@download/ENCFF666XKI.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking ENCFF059NSA fastq reads ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF666XKI 3409233594 Michael Snyder, Stanford 69474b24328120f4bbc8676784841897 SRA:SRR6212881 https://www.encodeproject.org/files/ENCFF059NSA/@@download/ENCFF059NSA.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking ENCFF957QWK fastq reads ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF956KKU 3744099128 Michael Snyder, Stanford 548f98e6a4cbeaaf870a013f39c09ed5 SRA:SRR6212880 https://www.encodeproject.org/files/ENCFF957QWK/@@download/ENCFF957QWK.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking ENCFF847DHJ bam unfiltered alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 100 ENCFF059NSA, ENCFF643CGH, ENCFF666XKI 6334642429 ENCODE Processing Pipeline 63c73b9a5516b22147fc17793b7f3a3d https://www.encodeproject.org/files/ENCFF847DHJ/@@download/ENCFF847DHJ.bam GRCh38 released mild to moderate bottlenecking ENCFF472SSN bam unfiltered alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 100 ENCFF059NSA, ENCFF666XKI, ENCFF807MUK 6328297515 ENCODE Processing Pipeline 112b33872526af65af91e553e620e2b5 https://www.encodeproject.org/files/ENCFF472SSN/@@download/ENCFF472SSN.bam hg19 released mild to moderate bottlenecking ENCFF036PMT bam unfiltered alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 100 ENCFF643CGH, ENCFF956KKU, ENCFF957QWK 6973184476 ENCODE Processing Pipeline 6fd4ad0c8d0ae54ecb34f13652c74806 https://www.encodeproject.org/files/ENCFF036PMT/@@download/ENCFF036PMT.bam GRCh38 released mild to moderate bottlenecking ENCFF502UWZ bam unfiltered alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 100 ENCFF807MUK, ENCFF956KKU, ENCFF957QWK 6965649753 ENCODE Processing Pipeline 7b5aedfddc5867b58d71cd8a52846a94 https://www.encodeproject.org/files/ENCFF502UWZ/@@download/ENCFF502UWZ.bam hg19 released mild to moderate bottlenecking ENCFF362KOB bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 100 ENCFF059NSA, ENCFF643CGH, ENCFF666XKI 4162752331 ENCODE Processing Pipeline 8ea45a8f6a779b54da74a57dcb111926 https://www.encodeproject.org/files/ENCFF362KOB/@@download/ENCFF362KOB.bam GRCh38 released mild to moderate bottlenecking ENCFF982XUS bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 100 ENCFF059NSA, ENCFF666XKI, ENCFF807MUK 4159609572 ENCODE Processing Pipeline 47288cd72f354ac042e758367019969d https://www.encodeproject.org/files/ENCFF982XUS/@@download/ENCFF982XUS.bam hg19 released mild to moderate bottlenecking ENCFF910GRL bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 100 ENCFF643CGH, ENCFF956KKU, ENCFF957QWK 4605788067 ENCODE Processing Pipeline e4c65defc001ac49d6fab1523dc36096 https://www.encodeproject.org/files/ENCFF910GRL/@@download/ENCFF910GRL.bam GRCh38 released mild to moderate bottlenecking ENCFF557UXG bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 100 ENCFF807MUK, ENCFF956KKU, ENCFF957QWK 4602554646 ENCODE Processing Pipeline ef777f1b86be9283605433899b75c7c1 https://www.encodeproject.org/files/ENCFF557UXG/@@download/ENCFF557UXG.bam hg19 released mild to moderate bottlenecking ENCFF593HVY bigWig signal p-value ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF160VXC, ENCFF557UXG 1124705897 ENCODE Processing Pipeline 35ac911e47254f2caa2af439af5244d9 https://www.encodeproject.org/files/ENCFF593HVY/@@download/ENCFF593HVY.bigWig hg19 released mild to moderate bottlenecking ENCFF705SXY bigWig signal p-value ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF834TUP, ENCFF982XUS 1340424940 ENCODE Processing Pipeline cde0415d731203429eb9ce389fba2f3e https://www.encodeproject.org/files/ENCFF705SXY/@@download/ENCFF705SXY.bigWig hg19 released mild to moderate bottlenecking ENCFF454WMN bigWig signal p-value ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF160VXC, ENCFF557UXG, ENCFF834TUP, ENCFF982XUS 1863080654 ENCODE Processing Pipeline 66a29f27bb5384cad2aba9626cfcfb7e https://www.encodeproject.org/files/ENCFF454WMN/@@download/ENCFF454WMN.bigWig hg19 released mild to moderate bottlenecking ENCFF308IRW bigWig fold change over control ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF160VXC, ENCFF557UXG 1393285346 ENCODE Processing Pipeline 9cbecf1a5522d50f9e67edb66e570922 https://www.encodeproject.org/files/ENCFF308IRW/@@download/ENCFF308IRW.bigWig hg19 released mild to moderate bottlenecking ENCFF653MIK bigWig fold change over control ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF834TUP, ENCFF982XUS 1321829988 ENCODE Processing Pipeline e6e575314dc6a6c8e5f6f1bae95bc62a https://www.encodeproject.org/files/ENCFF653MIK/@@download/ENCFF653MIK.bigWig hg19 released mild to moderate bottlenecking ENCFF547KCR bigWig fold change over control ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF160VXC, ENCFF557UXG, ENCFF834TUP, ENCFF982XUS 2324760119 ENCODE Processing Pipeline 2a64d7de72dde727e40c6bc3c80bd82b https://www.encodeproject.org/files/ENCFF547KCR/@@download/ENCFF547KCR.bigWig hg19 released mild to moderate bottlenecking ENCFF647EHE bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF160VXC, ENCFF557UXG 6810731 ENCODE Processing Pipeline eb698dad8929ad37dadb14376b02a824 https://www.encodeproject.org/files/ENCFF647EHE/@@download/ENCFF647EHE.bed.gz hg19 released mild to moderate bottlenecking ENCFF520CHA bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF834TUP, ENCFF982XUS 6640626 ENCODE Processing Pipeline 3bc01a3e3799b65a9311bba589dadedc https://www.encodeproject.org/files/ENCFF520CHA/@@download/ENCFF520CHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF996GWG bigBed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF647EHE 11220483 ENCODE Processing Pipeline 61f9955402c3810b33ed079330d17383 https://www.encodeproject.org/files/ENCFF996GWG/@@download/ENCFF996GWG.bigBed hg19 released mild to moderate bottlenecking ENCFF558GGF bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF160VXC, ENCFF557UXG, ENCFF834TUP, ENCFF982XUS 7158152 ENCODE Processing Pipeline 9aa9520c4e0f280d4685c9b292749ef9 https://www.encodeproject.org/files/ENCFF558GGF/@@download/ENCFF558GGF.bed.gz hg19 released mild to moderate bottlenecking ENCFF390EDP bigBed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF558GGF 10813122 ENCODE Processing Pipeline 563aafe2a216c452471db0ab1c05ca3f https://www.encodeproject.org/files/ENCFF390EDP/@@download/ENCFF390EDP.bigBed hg19 released mild to moderate bottlenecking ENCFF762SIV bigBed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF520CHA 11121726 ENCODE Processing Pipeline bb778389fd6065caa5d7004256c21c4e https://www.encodeproject.org/files/ENCFF762SIV/@@download/ENCFF762SIV.bigBed hg19 released mild to moderate bottlenecking ENCFF962VRS bigBed narrowPeak conservative idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF758SJG 156755 ENCODE Processing Pipeline 3ccfe55872307ab0b17bd297c1b51ce5 https://www.encodeproject.org/files/ENCFF962VRS/@@download/ENCFF962VRS.bigBed hg19 released mild to moderate bottlenecking ENCFF758SJG bed narrowPeak conservative idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF520CHA, ENCFF558GGF, ENCFF647EHE 62749 ENCODE Processing Pipeline 57694830eaf58317b8d4f53ed5e892b7 https://www.encodeproject.org/files/ENCFF758SJG/@@download/ENCFF758SJG.bed.gz hg19 released mild to moderate bottlenecking ENCFF322DSX bed narrowPeak optimal idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF520CHA, ENCFF558GGF, ENCFF647EHE 88312 ENCODE Processing Pipeline 28762e7df97bdc9821817b1cd72eac8c https://www.encodeproject.org/files/ENCFF322DSX/@@download/ENCFF322DSX.bed.gz hg19 released mild to moderate bottlenecking ENCFF875HSP bigBed narrowPeak optimal idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF322DSX 230160 ENCODE Processing Pipeline 49d7f426ec1eeaa283b35974b20297bb https://www.encodeproject.org/files/ENCFF875HSP/@@download/ENCFF875HSP.bigBed hg19 released mild to moderate bottlenecking ENCFF554YRI bigWig signal p-value ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF790TAN, ENCFF910GRL 1106301847 ENCODE Processing Pipeline 54dd51e68d6c45a492fd60d9ecc76b06 https://www.encodeproject.org/files/ENCFF554YRI/@@download/ENCFF554YRI.bigWig GRCh38 released mild to moderate bottlenecking ENCFF839VWF bigWig signal p-value ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF362KOB, ENCFF712WXB, ENCFF790TAN, ENCFF910GRL 1832444391 ENCODE Processing Pipeline da5b47a4e31225bb48b94be2a6edfe58 https://www.encodeproject.org/files/ENCFF839VWF/@@download/ENCFF839VWF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF535AEY bigWig signal p-value ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF362KOB, ENCFF712WXB 1296280092 ENCODE Processing Pipeline ae9f0035e8820c0e202cb19841188d9b https://www.encodeproject.org/files/ENCFF535AEY/@@download/ENCFF535AEY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF031FIJ bigWig fold change over control ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF790TAN, ENCFF910GRL 1394831378 ENCODE Processing Pipeline 109bcfb353502d47ee82967770189174 https://www.encodeproject.org/files/ENCFF031FIJ/@@download/ENCFF031FIJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF470JWT bigWig fold change over control ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF362KOB, ENCFF712WXB 1325351427 ENCODE Processing Pipeline 00f69f54470ade78772958e009d3dc11 https://www.encodeproject.org/files/ENCFF470JWT/@@download/ENCFF470JWT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF051CKS bigWig fold change over control ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF362KOB, ENCFF712WXB, ENCFF790TAN, ENCFF910GRL 2317513945 ENCODE Processing Pipeline 2fc6fde76b4281eb62c304aaa005e2d9 https://www.encodeproject.org/files/ENCFF051CKS/@@download/ENCFF051CKS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF969WHZ bigBed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF291ZTW 10829307 ENCODE Processing Pipeline 2eae9f631f8b1da06671c742247d722c https://www.encodeproject.org/files/ENCFF969WHZ/@@download/ENCFF969WHZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF601ZZJ bed narrowPeak conservative idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF291ZTW, ENCFF416DRI, ENCFF419RSJ, ENCFF539CDR 63704 ENCODE Processing Pipeline c51fe2506833980bb0af1596fca7408e https://www.encodeproject.org/files/ENCFF601ZZJ/@@download/ENCFF601ZZJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF416DRI bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF790TAN, ENCFF910GRL 6666541 ENCODE Processing Pipeline db7da79f83f28ea18aba0a846671809b https://www.encodeproject.org/files/ENCFF416DRI/@@download/ENCFF416DRI.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF539CDR bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF362KOB, ENCFF712WXB 6523459 ENCODE Processing Pipeline 98bfc3f724aa72fe8cf9d7e0fde427c9 https://www.encodeproject.org/files/ENCFF539CDR/@@download/ENCFF539CDR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF385MDJ bigBed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF416DRI 11231374 ENCODE Processing Pipeline c3f73b22033025794d41249b16eb438e https://www.encodeproject.org/files/ENCFF385MDJ/@@download/ENCFF385MDJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF674PZN bigBed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF539CDR 11132857 ENCODE Processing Pipeline 2fa617a5fd83c5d1f5aa4ff2208c18bd https://www.encodeproject.org/files/ENCFF674PZN/@@download/ENCFF674PZN.bigBed GRCh38 released mild to moderate bottlenecking ENCFF291ZTW bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF362KOB, ENCFF712WXB, ENCFF790TAN, ENCFF910GRL 7154672 ENCODE Processing Pipeline 5daae08872a5a7e2639ffdb95a5f003d https://www.encodeproject.org/files/ENCFF291ZTW/@@download/ENCFF291ZTW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF438BWN bed narrowPeak optimal idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF291ZTW, ENCFF416DRI, ENCFF419RSJ, ENCFF539CDR 89520 ENCODE Processing Pipeline 668c677f841ce7b7b005cdf1afaa9ff7 https://www.encodeproject.org/files/ENCFF438BWN/@@download/ENCFF438BWN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF841BDR bigBed narrowPeak conservative idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF601ZZJ 191300 ENCODE Processing Pipeline af32be699377fe644fc080157bb8c983 https://www.encodeproject.org/files/ENCFF841BDR/@@download/ENCFF841BDR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF941BMX bigBed narrowPeak optimal idr thresholded peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF438BWN 233591 ENCODE Processing Pipeline d9e64b6c2ba9c086667af74a5a1c68e4 https://www.encodeproject.org/files/ENCFF941BMX/@@download/ENCFF941BMX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF486HCN fastq reads ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 875266771 Richard Myers, HAIB 31bf389486cdaf3783a854d10ea9ca08 SRA:SRR6214406 https://www.encodeproject.org/files/ENCFF486HCN/@@download/ENCFF486HCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF158AFC/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF698SDI fastq reads ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1118284515 Richard Myers, HAIB bff2c45f04c826d766538daea79e5d48 SRA:SRR6214405 https://www.encodeproject.org/files/ENCFF698SDI/@@download/ENCFF698SDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF719VXT bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF486HCN, ENCFF643CGH 720623402 ENCODE Processing Pipeline 28b1f39389ed750668ea2d30174fa1bf https://www.encodeproject.org/files/ENCFF719VXT/@@download/ENCFF719VXT.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF984RIM bam unfiltered alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF698SDI 1227481388 ENCODE Processing Pipeline 94df04fb21f6c45faa3f30152915d2ae https://www.encodeproject.org/files/ENCFF984RIM/@@download/ENCFF984RIM.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF358INR bam unfiltered alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF486HCN, ENCFF643CGH 943942652 ENCODE Processing Pipeline 80d72ac8988efe22b2732998d4bdb94d https://www.encodeproject.org/files/ENCFF358INR/@@download/ENCFF358INR.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF281SWL bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF698SDI 887326201 ENCODE Processing Pipeline 27749d5875a817cc590ade2d42f3f9b5 https://www.encodeproject.org/files/ENCFF281SWL/@@download/ENCFF281SWL.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF235FIH bigWig signal p-value ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF719VXT, ENCFF985NSN 504496426 ENCODE Processing Pipeline 7750a3871d291d7ef3b48a5d6f2b4948 https://www.encodeproject.org/files/ENCFF235FIH/@@download/ENCFF235FIH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF938BZI bigWig signal p-value ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF281SWL, ENCFF370PSF 551558075 ENCODE Processing Pipeline 756c943308e38c54367dd6ae097bb74b https://www.encodeproject.org/files/ENCFF938BZI/@@download/ENCFF938BZI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF288XHG bed narrowPeak optimal idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF373LJO, ENCFF382IQD, ENCFF419RSJ, ENCFF748SCA 349182 ENCODE Processing Pipeline 3ee18d24c76c1a17b02151f1b37eb320 https://www.encodeproject.org/files/ENCFF288XHG/@@download/ENCFF288XHG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF525ALS bigWig fold change over control ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF719VXT, ENCFF985NSN 400881506 ENCODE Processing Pipeline 40085d705b82389a146192eb11044582 https://www.encodeproject.org/files/ENCFF525ALS/@@download/ENCFF525ALS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF382IQD bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF281SWL, ENCFF370PSF, ENCFF719VXT, ENCFF985NSN 6797268 ENCODE Processing Pipeline 50e5e85f35cc8b2302016e11dcbbac56 https://www.encodeproject.org/files/ENCFF382IQD/@@download/ENCFF382IQD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF511WBU bigBed narrowPeak optimal idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF288XHG 747268 ENCODE Processing Pipeline 2d10ffb8c1abc937b8cf1d3ba8949b08 https://www.encodeproject.org/files/ENCFF511WBU/@@download/ENCFF511WBU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF373LJO bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF281SWL, ENCFF370PSF 6015833 ENCODE Processing Pipeline 7d0ae26dcea6ab0922e1dcedda2af0b3 https://www.encodeproject.org/files/ENCFF373LJO/@@download/ENCFF373LJO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF550KKZ bigBed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF382IQD 13408296 ENCODE Processing Pipeline ce2137490b7c6a97e2ca2777ebd7d5ec https://www.encodeproject.org/files/ENCFF550KKZ/@@download/ENCFF550KKZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF214YYS bigWig signal p-value ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF281SWL, ENCFF370PSF, ENCFF719VXT, ENCFF985NSN 872235047 ENCODE Processing Pipeline 8727362ce1287387ef54070b39fb8990 https://www.encodeproject.org/files/ENCFF214YYS/@@download/ENCFF214YYS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF550ELI bigWig fold change over control ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF281SWL, ENCFF370PSF 548708746 ENCODE Processing Pipeline 93f1349343622fadc63d6d1ae64c54b4 https://www.encodeproject.org/files/ENCFF550ELI/@@download/ENCFF550ELI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF296QPD bigBed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF748SCA 13306079 ENCODE Processing Pipeline 0505a69940f2ee6487659a55736afec8 https://www.encodeproject.org/files/ENCFF296QPD/@@download/ENCFF296QPD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF216QTH bigBed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF373LJO 13349244 ENCODE Processing Pipeline a893570a097fc1ec4b64f5db412630a9 https://www.encodeproject.org/files/ENCFF216QTH/@@download/ENCFF216QTH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF378UBA bigBed narrowPeak conservative idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF516VNN 657830 ENCODE Processing Pipeline 5d9287eb000978e4e81bcec8937715cc https://www.encodeproject.org/files/ENCFF378UBA/@@download/ENCFF378UBA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF196LYG bigWig fold change over control ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF281SWL, ENCFF370PSF, ENCFF719VXT, ENCFF985NSN 1002072180 ENCODE Processing Pipeline f5ad8d0596f5277c192a3cf8080ef3e6 https://www.encodeproject.org/files/ENCFF196LYG/@@download/ENCFF196LYG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF748SCA bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF719VXT, ENCFF985NSN 5548312 ENCODE Processing Pipeline 0a4d37c3a5307ac67892a45893f93cd0 https://www.encodeproject.org/files/ENCFF748SCA/@@download/ENCFF748SCA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF516VNN bed narrowPeak conservative idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF373LJO, ENCFF382IQD, ENCFF419RSJ, ENCFF748SCA 293462 ENCODE Processing Pipeline 8ffce6c5f9e2c46feb1630ee9ae6f8f4 https://www.encodeproject.org/files/ENCFF516VNN/@@download/ENCFF516VNN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF116VFP bam unfiltered alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF486HCN, ENCFF807MUK 940220270 ENCODE Processing Pipeline b5f122e6688bb0b6052e55f3b6aa6c4b https://www.encodeproject.org/files/ENCFF116VFP/@@download/ENCFF116VFP.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF064JKD bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF698SDI, ENCFF807MUK 887308523 ENCODE Processing Pipeline d052dfdbbe2641801445ee77a6b13a4a https://www.encodeproject.org/files/ENCFF064JKD/@@download/ENCFF064JKD.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF644FYO bam unfiltered alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF698SDI, ENCFF807MUK 1221566473 ENCODE Processing Pipeline 416c88a1d9bcdfb33a4556dfda4c895d https://www.encodeproject.org/files/ENCFF644FYO/@@download/ENCFF644FYO.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF894WFR bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF486HCN, ENCFF807MUK 720633794 ENCODE Processing Pipeline 20dafa6ee5d83562e91930a950a81347 https://www.encodeproject.org/files/ENCFF894WFR/@@download/ENCFF894WFR.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF949OLH bigWig fold change over control ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF894WFR 412232772 ENCODE Processing Pipeline 3122331a04ba924b756aacc1c39b1e8a https://www.encodeproject.org/files/ENCFF949OLH/@@download/ENCFF949OLH.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF506HHV bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF064JKD, ENCFF359TIO, ENCFF894WFR, ENCFF991UTU 6780646 ENCODE Processing Pipeline f4a6a6fc4458ed6363515cfaf2d6cc32 https://www.encodeproject.org/files/ENCFF506HHV/@@download/ENCFF506HHV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF592OPP bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF064JKD, ENCFF991UTU 5999715 ENCODE Processing Pipeline a15f38fb65d200a33fec2d4c281babc9 https://www.encodeproject.org/files/ENCFF592OPP/@@download/ENCFF592OPP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF019HWK bigBed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF592OPP 13321328 ENCODE Processing Pipeline 190fca117da9b59ecccd8f0543247079 https://www.encodeproject.org/files/ENCFF019HWK/@@download/ENCFF019HWK.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF334FKO bed narrowPeak optimal idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF363JNV, ENCFF506HHV, ENCFF592OPP 346822 ENCODE Processing Pipeline c1655be4d3dc99d5b6dc81ee253bcce4 https://www.encodeproject.org/files/ENCFF334FKO/@@download/ENCFF334FKO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF865UZN bigWig signal p-value ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF064JKD, ENCFF991UTU 575449417 ENCODE Processing Pipeline 6d8a8bf8cb3e9073cb78f833b3e15472 https://www.encodeproject.org/files/ENCFF865UZN/@@download/ENCFF865UZN.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF575IRD bigBed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF363JNV 13316900 ENCODE Processing Pipeline 21bcd0655b3235fde854a55236d01818 https://www.encodeproject.org/files/ENCFF575IRD/@@download/ENCFF575IRD.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF333VPO bigWig signal p-value ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF894WFR 505531038 ENCODE Processing Pipeline 54c62722120cba2ed3518b60759408df https://www.encodeproject.org/files/ENCFF333VPO/@@download/ENCFF333VPO.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF653PTR bigWig signal p-value ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF064JKD, ENCFF359TIO, ENCFF894WFR, ENCFF991UTU 979373204 ENCODE Processing Pipeline 38f317d7fdbfcc62d3b798b9a90c2551 https://www.encodeproject.org/files/ENCFF653PTR/@@download/ENCFF653PTR.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF166NLA bigWig fold change over control ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF064JKD, ENCFF991UTU 530210264 ENCODE Processing Pipeline 98f2fb4013c8255cd9ca5b7f4322d20d https://www.encodeproject.org/files/ENCFF166NLA/@@download/ENCFF166NLA.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF533GQP bigWig fold change over control ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF064JKD, ENCFF359TIO, ENCFF894WFR, ENCFF991UTU 1022013385 ENCODE Processing Pipeline b703a2e02f68479ad823875bde601868 https://www.encodeproject.org/files/ENCFF533GQP/@@download/ENCFF533GQP.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF363JNV bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF894WFR 5567841 ENCODE Processing Pipeline ed353034eef1a680977248a5723c6883 https://www.encodeproject.org/files/ENCFF363JNV/@@download/ENCFF363JNV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF872XFA bigBed narrowPeak optimal idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF334FKO 742856 ENCODE Processing Pipeline 326b642539e3339725eb0756e2c6a0c9 https://www.encodeproject.org/files/ENCFF872XFA/@@download/ENCFF872XFA.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF580YDN bed narrowPeak conservative idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF363JNV, ENCFF506HHV, ENCFF592OPP 285930 ENCODE Processing Pipeline 8681b76458203dfdcf6fc3ffca4cd153 https://www.encodeproject.org/files/ENCFF580YDN/@@download/ENCFF580YDN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF689XTO bigBed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF506HHV 13381247 ENCODE Processing Pipeline a1841129e255ee80ed2d05424e9b1725 https://www.encodeproject.org/files/ENCFF689XTO/@@download/ENCFF689XTO.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF053WVI bigBed narrowPeak conservative idr thresholded peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF580YDN 645774 ENCODE Processing Pipeline e4b1607cfd268413f9d2b23cb6528abc https://www.encodeproject.org/files/ENCFF053WVI/@@download/ENCFF053WVI.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF000SBT bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SCC 817235937 Vishwanath Iyer, UTA 08b33996fafdea70a673a0938c4a810f https://www.encodeproject.org/files/ENCFF000SBT/@@download/ENCFF000SBT.bam hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000SBU bigWig base overlap signal ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1156624334 Vishwanath Iyer, UTA 1fa844b95862d91648da5610d9c75eda https://www.encodeproject.org/files/ENCFF000SBU/@@download/ENCFF000SBU.bigWig hg19 archived control low read depth, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000SBW bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTW 1854678 Vishwanath Iyer, UTA a87a69c12fbe7923f366de0edab70a52 https://www.encodeproject.org/files/ENCFF000SBW/@@download/ENCFF000SBW.bigBed hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000SBX bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SCF 1110958733 Vishwanath Iyer, UTA efbc05b2e2b9b3c62e742ddcab7af626 https://www.encodeproject.org/files/ENCFF000SBX/@@download/ENCFF000SBX.bam hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000SBZ bigWig signal ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 4104970625 Vishwanath Iyer, UTA 15ea10fffb285f5bba3d3a8bfc084e96 https://www.encodeproject.org/files/ENCFF000SBZ/@@download/ENCFF000SBZ.bigWig hg19 archived control low read depth, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000SCC fastq reads ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 825623382 Vishwanath Iyer, UTA abb4603969c7443ad0cd0c334c2376f0 https://www.encodeproject.org/files/ENCFF000SCC/@@download/ENCFF000SCC.fastq.gz Illumina Genome Analyzer /files/ENCFF000SCG/ released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000SCF fastq reads ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 1150274172 Vishwanath Iyer, UTA 8549c0b2ed65a9e16e7b97316fa4402c https://www.encodeproject.org/files/ENCFF000SCF/@@download/ENCFF000SCF.fastq.gz Illumina Genome Analyzer /files/ENCFF000SCG/ released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF001UTW bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1126676 Vishwanath Iyer, UTA 622afeb1b860c907cac627b9d9c150be https://www.encodeproject.org/files/ENCFF001UTW/@@download/ENCFF001UTW.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF658TSI bam unfiltered alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SCF, ENCFF807MUK 1307808674 ENCODE Processing Pipeline 71f5dc57058210a456bb46da9d0aa734 https://www.encodeproject.org/files/ENCFF658TSI/@@download/ENCFF658TSI.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF857JTI bam unfiltered alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SCF, ENCFF643CGH 1311004924 ENCODE Processing Pipeline 21c7441596a5138603e1b6334fa4dfe0 https://www.encodeproject.org/files/ENCFF857JTI/@@download/ENCFF857JTI.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF075SLF bam unfiltered alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SCC, ENCFF807MUK 932111614 ENCODE Processing Pipeline fdd3ca0a35d018d2feb48555069ef0d9 https://www.encodeproject.org/files/ENCFF075SLF/@@download/ENCFF075SLF.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF079QBW bam unfiltered alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SCC, ENCFF643CGH 934184751 ENCODE Processing Pipeline 6a947ba4cf0b370b6ce3799d7f0527df https://www.encodeproject.org/files/ENCFF079QBW/@@download/ENCFF079QBW.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF482VWN bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SCC, ENCFF643CGH 581362669 ENCODE Processing Pipeline 539346f3085e9be0a1746996bb383646 https://www.encodeproject.org/files/ENCFF482VWN/@@download/ENCFF482VWN.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF364YRB bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SCF, ENCFF807MUK 816061448 ENCODE Processing Pipeline b5c4cfd11f9d984d79b4b180b5f2d231 https://www.encodeproject.org/files/ENCFF364YRB/@@download/ENCFF364YRB.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF446HAE bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SCC, ENCFF807MUK 581364310 ENCODE Processing Pipeline 0e6d7855df8debb91a6244a8b9711ef0 https://www.encodeproject.org/files/ENCFF446HAE/@@download/ENCFF446HAE.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF291LYW bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SCF, ENCFF643CGH 816052320 ENCODE Processing Pipeline 8dea214c817ad3a0a733aa1b3055e01a https://www.encodeproject.org/files/ENCFF291LYW/@@download/ENCFF291LYW.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF707STN bigWig fold change over control ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF291LYW 209438220 ENCODE Processing Pipeline 32db8217a1250750fcef41509cdaf71d https://www.encodeproject.org/files/ENCFF707STN/@@download/ENCFF707STN.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF598NBV bigWig signal p-value ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF482VWN 305086422 ENCODE Processing Pipeline 74c11670492ed72be6ced94ff5cc81fa https://www.encodeproject.org/files/ENCFF598NBV/@@download/ENCFF598NBV.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF972OUQ bigWig signal p-value ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF291LYW, ENCFF482VWN 330327962 ENCODE Processing Pipeline b7e9bce80d1ce2c64dc99f4a977e7ab9 https://www.encodeproject.org/files/ENCFF972OUQ/@@download/ENCFF972OUQ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF518FNG bigWig signal p-value ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF291LYW 289196052 ENCODE Processing Pipeline 302fa3e37ea976edfaf7df2332f85ac6 https://www.encodeproject.org/files/ENCFF518FNG/@@download/ENCFF518FNG.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF120OYZ bigWig fold change over control ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF291LYW, ENCFF482VWN 344283352 ENCODE Processing Pipeline 2d2f9b6b148a849b900f48d0da7bdbdf https://www.encodeproject.org/files/ENCFF120OYZ/@@download/ENCFF120OYZ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF057LPE bigWig fold change over control ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF482VWN 160695735 ENCODE Processing Pipeline 01eb58874796857eef639152e092432f https://www.encodeproject.org/files/ENCFF057LPE/@@download/ENCFF057LPE.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF617QMO bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF939PBN 7402165 ENCODE Processing Pipeline 1aecfc3d19561370b23b5632c643bb33 https://www.encodeproject.org/files/ENCFF617QMO/@@download/ENCFF617QMO.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF731VIC bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF928JWJ 3371003 ENCODE Processing Pipeline d50f5d08d69ac9e8120516ef7967fd95 https://www.encodeproject.org/files/ENCFF731VIC/@@download/ENCFF731VIC.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF615ZVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF845NAG 1332487 ENCODE Processing Pipeline ebe7a71e038dc23e621984d3bc20a00c https://www.encodeproject.org/files/ENCFF615ZVS/@@download/ENCFF615ZVS.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF939PBN bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF291LYW 3682135 ENCODE Processing Pipeline a3a39e91bc593f7a076f5e6191d2d6c9 https://www.encodeproject.org/files/ENCFF939PBN/@@download/ENCFF939PBN.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF652DOH bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF482VWN 3664628 ENCODE Processing Pipeline 1065f5614892bc30c725ff3da2166ced https://www.encodeproject.org/files/ENCFF652DOH/@@download/ENCFF652DOH.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF186UTX bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF652DOH 7293072 ENCODE Processing Pipeline a2dad81bc97a0b9d39eaff8cfb7142b0 https://www.encodeproject.org/files/ENCFF186UTX/@@download/ENCFF186UTX.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF363BEL bed narrowPeak conservative idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF652DOH, ENCFF928JWJ, ENCFF939PBN 674044 ENCODE Processing Pipeline 3bc6334f645025940ccec10b89f1c40e https://www.encodeproject.org/files/ENCFF363BEL/@@download/ENCFF363BEL.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF495VLX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF363BEL 1298057 ENCODE Processing Pipeline 59ab3cf614a6e618ffce830ca8518ad6 https://www.encodeproject.org/files/ENCFF495VLX/@@download/ENCFF495VLX.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF928JWJ bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF291LYW, ENCFF482VWN 1623513 ENCODE Processing Pipeline e442a17cc86d80bdfac8da7ccd0c99ae https://www.encodeproject.org/files/ENCFF928JWJ/@@download/ENCFF928JWJ.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF845NAG bed narrowPeak optimal idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF652DOH, ENCFF928JWJ, ENCFF939PBN 697456 ENCODE Processing Pipeline 5938cc121876c7b44b0bf0aef46ecb96 https://www.encodeproject.org/files/ENCFF845NAG/@@download/ENCFF845NAG.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF862USQ bigWig signal p-value ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF023GMN, ENCFF364YRB, ENCFF446HAE 330258923 ENCODE Processing Pipeline a62ca81c03e5817f55a4e3242f2773e5 https://www.encodeproject.org/files/ENCFF862USQ/@@download/ENCFF862USQ.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF827QCK bigWig fold change over control ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF023GMN, ENCFF364YRB, ENCFF446HAE 346617154 ENCODE Processing Pipeline 310286fc4f8cf387cc5ed698fa3a9305 https://www.encodeproject.org/files/ENCFF827QCK/@@download/ENCFF827QCK.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF512NKG bigWig signal p-value ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF023GMN, ENCFF446HAE 260217117 ENCODE Processing Pipeline 9b6bfa7b2912b9829e35f1e32912df2d https://www.encodeproject.org/files/ENCFF512NKG/@@download/ENCFF512NKG.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF756XCQ bigWig fold change over control ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF023GMN, ENCFF446HAE 161948830 ENCODE Processing Pipeline d490bd9ecafd9649cf00ebb900fe0d4e https://www.encodeproject.org/files/ENCFF756XCQ/@@download/ENCFF756XCQ.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF696TRI bigWig fold change over control ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF023GMN, ENCFF364YRB 209534003 ENCODE Processing Pipeline 3249ea55b4ba2419585a6a7c7d7276c7 https://www.encodeproject.org/files/ENCFF696TRI/@@download/ENCFF696TRI.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF525QBA bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF023GMN, ENCFF446HAE 3655099 ENCODE Processing Pipeline 2cca84b4e022702c1ccf58715598d44f https://www.encodeproject.org/files/ENCFF525QBA/@@download/ENCFF525QBA.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF129KAT bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF550YRO 3371572 ENCODE Processing Pipeline f2214334368e3d14955bb02eb9e54283 https://www.encodeproject.org/files/ENCFF129KAT/@@download/ENCFF129KAT.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF228MBX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF874DDR 1333714 ENCODE Processing Pipeline b88be9026f29e0f7629d4ce87a6c34d9 https://www.encodeproject.org/files/ENCFF228MBX/@@download/ENCFF228MBX.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF521PVX bigWig signal p-value ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF023GMN, ENCFF364YRB 289189252 ENCODE Processing Pipeline a165f202f926f2b826f43305ec0fedb8 https://www.encodeproject.org/files/ENCFF521PVX/@@download/ENCFF521PVX.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF874DDR bed narrowPeak optimal idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF012GOG, ENCFF525QBA, ENCFF550YRO 699291 ENCODE Processing Pipeline 09f2bc62227b28b0550ce5999dd49d02 https://www.encodeproject.org/files/ENCFF874DDR/@@download/ENCFF874DDR.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF444WDW bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF012GOG 7431525 ENCODE Processing Pipeline 8e0bfe54c0e3126228b893f9d84fffa8 https://www.encodeproject.org/files/ENCFF444WDW/@@download/ENCFF444WDW.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF012GOG bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF023GMN, ENCFF364YRB 3694904 ENCODE Processing Pipeline 6b4da5dee3c34bbed24a83628e774d40 https://www.encodeproject.org/files/ENCFF012GOG/@@download/ENCFF012GOG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF550YRO bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF023GMN, ENCFF364YRB, ENCFF446HAE 1625181 ENCODE Processing Pipeline b4baf30ea52ea878b0060cde2f00ad26 https://www.encodeproject.org/files/ENCFF550YRO/@@download/ENCFF550YRO.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF813QYC bigBed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF525QBA 7290569 ENCODE Processing Pipeline 527ebb03e75d6431722f43a21155a029 https://www.encodeproject.org/files/ENCFF813QYC/@@download/ENCFF813QYC.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF500PGG bed narrowPeak conservative idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF012GOG, ENCFF525QBA, ENCFF550YRO 672515 ENCODE Processing Pipeline 6fe9dc5b1e9a77db18babfda1e97fa38 https://www.encodeproject.org/files/ENCFF500PGG/@@download/ENCFF500PGG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF172SRA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF500PGG 1294843 ENCODE Processing Pipeline 135219fe1be97a10dac193646100e701 https://www.encodeproject.org/files/ENCFF172SRA/@@download/ENCFF172SRA.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF985MPR fastq reads ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF850QKH 2565746252 Richard Myers, HAIB 0383f7b419a636fe45f6fee295f9f5ae SRA:SRR6213001 https://www.encodeproject.org/files/ENCFF985MPR/@@download/ENCFF985MPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF960ZTN/ released antibody characterized with exemption missing control alignments ENCFF850QKH fastq reads ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF985MPR 2634971744 Richard Myers, HAIB 5129a6eb1ced3f08a700e802e38ec221 SRA:SRR6213001 https://www.encodeproject.org/files/ENCFF850QKH/@@download/ENCFF850QKH.fastq.gz Illumina HiSeq 2000 /files/ENCFF985KLY/ released antibody characterized with exemption missing control alignments ENCFF148HNI bam unfiltered alignments ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF850QKH, ENCFF985MPR 6229784961 ENCODE Processing Pipeline 6f01b0ddb1b27d28700e055e2dac8896 https://www.encodeproject.org/files/ENCFF148HNI/@@download/ENCFF148HNI.bam hg19 released antibody characterized with exemption missing control alignments ENCFF227ZUD bam unfiltered alignments ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF850QKH, ENCFF985MPR 6261927196 ENCODE Processing Pipeline fb158428aa8dc0c0d7d6a9b8e2e9577b https://www.encodeproject.org/files/ENCFF227ZUD/@@download/ENCFF227ZUD.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF435EWI bam alignments ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF850QKH, ENCFF985MPR 4718261718 ENCODE Processing Pipeline 14f5b99bd6b993a31ac60d935a98a4a5 https://www.encodeproject.org/files/ENCFF435EWI/@@download/ENCFF435EWI.bam hg19 released antibody characterized with exemption missing control alignments ENCFF502KKQ bam alignments ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF850QKH, ENCFF985MPR 4727976166 ENCODE Processing Pipeline 59852c42d4cfeefcb967895c75bcd82e https://www.encodeproject.org/files/ENCFF502KKQ/@@download/ENCFF502KKQ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF189NYU bigWig signal p-value ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF435EWI 1490186667 ENCODE Processing Pipeline 80097e516f2a4389b20212166066adfd https://www.encodeproject.org/files/ENCFF189NYU/@@download/ENCFF189NYU.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF248YXA bigWig fold change over control ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF435EWI 1489770520 ENCODE Processing Pipeline b04294d4e47031878bb925df1c398a07 https://www.encodeproject.org/files/ENCFF248YXA/@@download/ENCFF248YXA.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF099GES bed narrowPeak peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF435EWI 4235605 ENCODE Processing Pipeline c82f6830ae4ec56fbbcc45e5cc3d739b https://www.encodeproject.org/files/ENCFF099GES/@@download/ENCFF099GES.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF058NDV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF459MDC 15772 ENCODE Processing Pipeline 343fbd4db380949a0cd0c04b7366decc https://www.encodeproject.org/files/ENCFF058NDV/@@download/ENCFF058NDV.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF109RUD bigBed narrowPeak peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF099GES 7239195 ENCODE Processing Pipeline 21b378bed0623c3d0143003cbe54d6e4 https://www.encodeproject.org/files/ENCFF109RUD/@@download/ENCFF109RUD.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF459MDC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF099GES 640 ENCODE Processing Pipeline cb056cda2a38a919fd77afcd74702275 https://www.encodeproject.org/files/ENCFF459MDC/@@download/ENCFF459MDC.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF895RTD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF543DBA 919 ENCODE Processing Pipeline bb899ec11657c0cb260e01a33c0fce0d https://www.encodeproject.org/files/ENCFF895RTD/@@download/ENCFF895RTD.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF282FFQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF895RTD 69342 ENCODE Processing Pipeline e210caa4bdd8f60870c44eaf0daea061 https://www.encodeproject.org/files/ENCFF282FFQ/@@download/ENCFF282FFQ.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF543DBA bed narrowPeak peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502KKQ 4250736 ENCODE Processing Pipeline f0597191a1f5e89733063a9aea461c2c https://www.encodeproject.org/files/ENCFF543DBA/@@download/ENCFF543DBA.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF537FYP bigWig signal p-value ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502KKQ 1492594106 ENCODE Processing Pipeline 2806131cd447dd4e05c5affe9f37f821 https://www.encodeproject.org/files/ENCFF537FYP/@@download/ENCFF537FYP.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF293JGY bigBed narrowPeak peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF543DBA 7268909 ENCODE Processing Pipeline 277dde35225cc91293e8b35c37865681 https://www.encodeproject.org/files/ENCFF293JGY/@@download/ENCFF293JGY.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF830DPZ bigWig fold change over control ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502KKQ 1487983020 ENCODE Processing Pipeline 42f5489d529b5f4209ac3ac51ea7816d https://www.encodeproject.org/files/ENCFF830DPZ/@@download/ENCFF830DPZ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF000OLV bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OMI 678060709 Richard Myers, HAIB afd6a654f43dfd9b0d657595b26f1a05 https://www.encodeproject.org/files/ENCFF000OLV/@@download/ENCFF000OLV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OLX bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OML 1078621506 Richard Myers, HAIB d6d22c7d204744d101f02e1c49a4f5a3 https://www.encodeproject.org/files/ENCFF000OLX/@@download/ENCFF000OLX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OLY bigBed broadPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAQ 659118 Richard Myers, HAIB e50586b6e85c3e370cc627e3bab1b75c https://www.encodeproject.org/files/ENCFF000OLY/@@download/ENCFF000OLY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OMA bigBed broadPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAR 287912 Richard Myers, HAIB bbb6b1d16a19fcf308cc7ba8dd8d5015 https://www.encodeproject.org/files/ENCFF000OMA/@@download/ENCFF000OMA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OMB bigWig raw signal ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 19984713 Richard Myers, HAIB be559800c81fade35dc27e8680c55abb https://www.encodeproject.org/files/ENCFF000OMB/@@download/ENCFF000OMB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OMC bigWig raw signal ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 16544195 Richard Myers, HAIB 1aad9f295b4c37af2e85caca86d128cb https://www.encodeproject.org/files/ENCFF000OMC/@@download/ENCFF000OMC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OMI fastq reads ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 632017699 Richard Myers, HAIB 0f1d1e80e65c08f43f98eee6042e7d5b https://www.encodeproject.org/files/ENCFF000OMI/@@download/ENCFF000OMI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLS/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OML fastq reads ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 947630020 Richard Myers, HAIB 3fd125abdf21254c0d70f8b8a74eaff7 https://www.encodeproject.org/files/ENCFF000OML/@@download/ENCFF000OML.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLS/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001UAQ bed broadPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 431082 Richard Myers, HAIB 00aad22ea19890ccb9145619a22608fc https://www.encodeproject.org/files/ENCFF001UAQ/@@download/ENCFF001UAQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UAR bed broadPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 166204 Richard Myers, HAIB 6eca10344705d0aa7eacb561fa35fcd7 https://www.encodeproject.org/files/ENCFF001UAR/@@download/ENCFF001UAR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CIQ bed narrowPeak optimal idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 314930 ENCODE Consortium Analysis Working Group 2e6452116f6209adbe07483c03da261b https://www.encodeproject.org/files/ENCFF002CIQ/@@download/ENCFF002CIQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF015WVO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIQ 742894 ENCODE Consortium 7320f7ec08c5dcb5ac36e0f7bbd42439 https://www.encodeproject.org/files/ENCFF015WVO/@@download/ENCFF015WVO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF981GSU bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMI, ENCFF643CGH 447846038 ENCODE Processing Pipeline 66ab8ba1153416e8a6dd52ace05d14c6 https://www.encodeproject.org/files/ENCFF981GSU/@@download/ENCFF981GSU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF782ISX bam unfiltered alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMI, ENCFF643CGH 814508154 ENCODE Processing Pipeline c4cf2118b86e2fbf97fcd21869092848 https://www.encodeproject.org/files/ENCFF782ISX/@@download/ENCFF782ISX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF627UME bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OML, ENCFF643CGH 788083385 ENCODE Processing Pipeline e6322fc82d8523e7035a6394f4b55e56 https://www.encodeproject.org/files/ENCFF627UME/@@download/ENCFF627UME.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF297QAP bam unfiltered alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OML, ENCFF643CGH 1263229469 ENCODE Processing Pipeline 887a2afec60f39a1ccf99dbbbf8ef7da https://www.encodeproject.org/files/ENCFF297QAP/@@download/ENCFF297QAP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF208PVV bam unfiltered alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMI, ENCFF807MUK 817068983 ENCODE Processing Pipeline e126baf9ae46021c5dc26860dbd5ab28 https://www.encodeproject.org/files/ENCFF208PVV/@@download/ENCFF208PVV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF632AHN bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMI, ENCFF807MUK 442840254 ENCODE Processing Pipeline db692737fbbc25269e563b9f8ef850f6 https://www.encodeproject.org/files/ENCFF632AHN/@@download/ENCFF632AHN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF951SLF bam unfiltered alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OML, ENCFF807MUK 1259991430 ENCODE Processing Pipeline 22b7497b20dfdada5822f69ff395359b https://www.encodeproject.org/files/ENCFF951SLF/@@download/ENCFF951SLF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF790IAM bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OML, ENCFF807MUK 785178821 ENCODE Processing Pipeline 61eb4b6269d6b4526cf1da709fcebd83 https://www.encodeproject.org/files/ENCFF790IAM/@@download/ENCFF790IAM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF965OZC bigWig signal p-value ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF827ILE, ENCFF981GSU 470044095 ENCODE Processing Pipeline f71c3c293e4cf903d0e29dec9227956e https://www.encodeproject.org/files/ENCFF965OZC/@@download/ENCFF965OZC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF329SEO bigWig signal p-value ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF627UME, ENCFF827ILE, ENCFF981GSU 678442705 ENCODE Processing Pipeline f820e7de0ff7e81efab542c13975e446 https://www.encodeproject.org/files/ENCFF329SEO/@@download/ENCFF329SEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF212UBM bigWig fold change over control ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF627UME, ENCFF827ILE 459002001 ENCODE Processing Pipeline 19fc4147765e9552b88e31f29fe76209 https://www.encodeproject.org/files/ENCFF212UBM/@@download/ENCFF212UBM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF236HJF bigWig signal p-value ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF627UME, ENCFF827ILE 503824336 ENCODE Processing Pipeline 814c1cab4d26a7f76d9a7559e46d39a7 https://www.encodeproject.org/files/ENCFF236HJF/@@download/ENCFF236HJF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF895YUC bigWig fold change over control ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF627UME, ENCFF827ILE, ENCFF981GSU 623140935 ENCODE Processing Pipeline 7eccf118221a51d10bac315e9bf7e3d5 https://www.encodeproject.org/files/ENCFF895YUC/@@download/ENCFF895YUC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF610ZYL bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF827ILE, ENCFF981GSU 5407053 ENCODE Processing Pipeline ba81498ec6e8073a8be94ab80f6e955f https://www.encodeproject.org/files/ENCFF610ZYL/@@download/ENCFF610ZYL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF638LMU bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF627UME, ENCFF827ILE 4877791 ENCODE Processing Pipeline 166ffafd58d3f68bbf8cc8fd0161f639 https://www.encodeproject.org/files/ENCFF638LMU/@@download/ENCFF638LMU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF314DZW bigWig fold change over control ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF827ILE, ENCFF981GSU 275899101 ENCODE Processing Pipeline 46a7799dcc77954e18b2e6066f38d047 https://www.encodeproject.org/files/ENCFF314DZW/@@download/ENCFF314DZW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF296TQE bigBed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF610ZYL 12950048 ENCODE Processing Pipeline 0d6d2f280e14215d075ddb8b9578c159 https://www.encodeproject.org/files/ENCFF296TQE/@@download/ENCFF296TQE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF481SOW bigBed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF638LMU 11107722 ENCODE Processing Pipeline 65a2ca094f3c98931ef3429467c221d2 https://www.encodeproject.org/files/ENCFF481SOW/@@download/ENCFF481SOW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF726HLR bigBed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF170YHF 13501099 ENCODE Processing Pipeline 9ed1ec28cc324cbceb2abf52da7b3942 https://www.encodeproject.org/files/ENCFF726HLR/@@download/ENCFF726HLR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF072IHJ bed narrowPeak optimal idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF170YHF, ENCFF419RSJ, ENCFF610ZYL, ENCFF638LMU 355167 ENCODE Processing Pipeline 6fa9471ae4d4ed4de71b3172b83c4efa https://www.encodeproject.org/files/ENCFF072IHJ/@@download/ENCFF072IHJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF170YHF bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF627UME, ENCFF827ILE, ENCFF981GSU 5969514 ENCODE Processing Pipeline e8b19cfd9005438036c747e6d8acc406 https://www.encodeproject.org/files/ENCFF170YHF/@@download/ENCFF170YHF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF571RHI bed narrowPeak conservative idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF170YHF, ENCFF419RSJ, ENCFF610ZYL, ENCFF638LMU 204024 ENCODE Processing Pipeline 03f90a29f34b578a33dc2b34211f7a89 https://www.encodeproject.org/files/ENCFF571RHI/@@download/ENCFF571RHI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF668SIE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF571RHI 447180 ENCODE Processing Pipeline 4f7917622eb6f54a14ba1742d6b78ae2 https://www.encodeproject.org/files/ENCFF668SIE/@@download/ENCFF668SIE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF625DJK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF072IHJ 655315 ENCODE Processing Pipeline 5142189c774fdbbfaa552c492b513d7d https://www.encodeproject.org/files/ENCFF625DJK/@@download/ENCFF625DJK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF596ALJ bigWig signal p-value ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134LQW, ENCFF632AHN 507549646 ENCODE Processing Pipeline e7d27b45b0224ebe1eabb0990981723e https://www.encodeproject.org/files/ENCFF596ALJ/@@download/ENCFF596ALJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF587ERW bigWig fold change over control ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134LQW, ENCFF632AHN 276981271 ENCODE Processing Pipeline d6d99f90f6abf55bdcb8a0a4dd76921d https://www.encodeproject.org/files/ENCFF587ERW/@@download/ENCFF587ERW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF916ATD bigWig signal p-value ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF134LQW, ENCFF632AHN, ENCFF790IAM 679082416 ENCODE Processing Pipeline 68fb10847c03dc63589d77cdae4a40c4 https://www.encodeproject.org/files/ENCFF916ATD/@@download/ENCFF916ATD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF130ZLZ bigWig signal p-value ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134LQW, ENCFF790IAM 543538801 ENCODE Processing Pipeline 912ebc119be4a934aba426b6742a54f3 https://www.encodeproject.org/files/ENCFF130ZLZ/@@download/ENCFF130ZLZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF929TQZ bigWig fold change over control ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134LQW, ENCFF790IAM 457181821 ENCODE Processing Pipeline b2d026cf9b32998ce34d21d8221029a1 https://www.encodeproject.org/files/ENCFF929TQZ/@@download/ENCFF929TQZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF667URP bed narrowPeak optimal idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF311HXH, ENCFF434TLG, ENCFF797ZRE 329888 ENCODE Processing Pipeline 691ee9a84e6688bc1a23a04fcd3fb199 https://www.encodeproject.org/files/ENCFF667URP/@@download/ENCFF667URP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF598UDT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF983BQI 437234 ENCODE Processing Pipeline 752aebe292e313624be13248dc2e70b1 https://www.encodeproject.org/files/ENCFF598UDT/@@download/ENCFF598UDT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF434TLG bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134LQW, ENCFF790IAM 4875322 ENCODE Processing Pipeline cbc2135234f89eb5e48555ed922ad0ff https://www.encodeproject.org/files/ENCFF434TLG/@@download/ENCFF434TLG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF797ZRE bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF134LQW, ENCFF632AHN, ENCFF790IAM 5911434 ENCODE Processing Pipeline f7d481f5b54cd0efcdf9ca1b8e0541e8 https://www.encodeproject.org/files/ENCFF797ZRE/@@download/ENCFF797ZRE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF772TVE bigWig fold change over control ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF134LQW, ENCFF632AHN, ENCFF790IAM 626037280 ENCODE Processing Pipeline d00698faa7b8d03590393293abbdc10f https://www.encodeproject.org/files/ENCFF772TVE/@@download/ENCFF772TVE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF035CYB bigBed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311HXH 12681980 ENCODE Processing Pipeline 9c5fec932503f2aa2d0c493d3626069c https://www.encodeproject.org/files/ENCFF035CYB/@@download/ENCFF035CYB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF983BQI bed narrowPeak conservative idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF311HXH, ENCFF434TLG, ENCFF797ZRE 198757 ENCODE Processing Pipeline ecbc16560b2d337b6f33f7f652368dba https://www.encodeproject.org/files/ENCFF983BQI/@@download/ENCFF983BQI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF311HXH bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134LQW, ENCFF632AHN 5189469 ENCODE Processing Pipeline 32ce4896d147292c080d225b3097ded9 https://www.encodeproject.org/files/ENCFF311HXH/@@download/ENCFF311HXH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF760SAA bigBed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF434TLG 11107036 ENCODE Processing Pipeline 78c8c6ff7011610d514053b210a2b2f8 https://www.encodeproject.org/files/ENCFF760SAA/@@download/ENCFF760SAA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF611SJO bigBed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF797ZRE 13430721 ENCODE Processing Pipeline 0da1b9594473a8dfe11a090493afd629 https://www.encodeproject.org/files/ENCFF611SJO/@@download/ENCFF611SJO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF486ISI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF667URP 616858 ENCODE Processing Pipeline f07da6001d69271f970a3b83ff0ae16a https://www.encodeproject.org/files/ENCFF486ISI/@@download/ENCFF486ISI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF339LBU fastq reads ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF349ISG 2003545836 Richard Myers, HAIB ba1a115160bad9b3538cdb7526d21562 SRA:SRR6214206 https://www.encodeproject.org/files/ENCFF339LBU/@@download/ENCFF339LBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF215CIJ/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF349ISG fastq reads ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF339LBU 2101060853 Richard Myers, HAIB 0e4f169221e1406839148f3eb4302e17 SRA:SRR6214206 https://www.encodeproject.org/files/ENCFF349ISG/@@download/ENCFF349ISG.fastq.gz Illumina HiSeq 2000 /files/ENCFF559JAA/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF653MRG bam unfiltered alignments ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF339LBU, ENCFF349ISG, ENCFF643CGH 4901558872 ENCODE Processing Pipeline 660f142ef467060b880f6e64c16fb56f https://www.encodeproject.org/files/ENCFF653MRG/@@download/ENCFF653MRG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF639ZPV bam unfiltered alignments ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF339LBU, ENCFF349ISG, ENCFF807MUK 4882716979 ENCODE Processing Pipeline 76a4ba5b4cea5160bbf456124a2867b3 https://www.encodeproject.org/files/ENCFF639ZPV/@@download/ENCFF639ZPV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF031YAG bam alignments ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF339LBU, ENCFF349ISG, ENCFF807MUK 3195959043 ENCODE Processing Pipeline 37fad7cf76775120215dc007e7f7d368 https://www.encodeproject.org/files/ENCFF031YAG/@@download/ENCFF031YAG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF210SBD bam alignments ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF339LBU, ENCFF349ISG, ENCFF643CGH 3196977121 ENCODE Processing Pipeline a47a379d500d23ce8327001c3c613841 https://www.encodeproject.org/files/ENCFF210SBD/@@download/ENCFF210SBD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF647ASU bigWig fold change over control ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF210SBD 1176551354 ENCODE Processing Pipeline f8524985a5242b42ddb9f2846ae7dc8c https://www.encodeproject.org/files/ENCFF647ASU/@@download/ENCFF647ASU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF945HYB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF434OJH 45135 ENCODE Processing Pipeline b6018b274ee706b8110a19ba37e3ea29 https://www.encodeproject.org/files/ENCFF945HYB/@@download/ENCFF945HYB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF992MZM bigWig signal p-value ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF210SBD 1010442130 ENCODE Processing Pipeline 6d9e060080654a58b1c8829dbce1d415 https://www.encodeproject.org/files/ENCFF992MZM/@@download/ENCFF992MZM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF858JRL bed narrowPeak peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF210SBD 5214806 ENCODE Processing Pipeline 9ce8ed3f2bd8d4a0b4f71dc03d468a36 https://www.encodeproject.org/files/ENCFF858JRL/@@download/ENCFF858JRL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF610QOT bigBed narrowPeak peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF858JRL 11449353 ENCODE Processing Pipeline 7f6caaf0e7f178d644a242ec8196d043 https://www.encodeproject.org/files/ENCFF610QOT/@@download/ENCFF610QOT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF434OJH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF858JRL 1116 ENCODE Processing Pipeline eff37293fc7da1b818ab28dbaaced81d https://www.encodeproject.org/files/ENCFF434OJH/@@download/ENCFF434OJH.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF228ONB bigWig fold change over control ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF031YAG 1175715088 ENCODE Processing Pipeline 2e1c123c9fc4de22a38859ac0fe483a4 https://www.encodeproject.org/files/ENCFF228ONB/@@download/ENCFF228ONB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF562NNY bigWig signal p-value ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF031YAG 1029199823 ENCODE Processing Pipeline 4887c2ba41df4c9982ae08130eb4d90f https://www.encodeproject.org/files/ENCFF562NNY/@@download/ENCFF562NNY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF075WCP bed narrowPeak peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF031YAG 5215129 ENCODE Processing Pipeline f6e0179eb4400c12766a4769cd8475fe https://www.encodeproject.org/files/ENCFF075WCP/@@download/ENCFF075WCP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF793HCV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF075WCP 936 ENCODE Processing Pipeline f66baaf54a9c8d4a9a7fbc712b91a5cb https://www.encodeproject.org/files/ENCFF793HCV/@@download/ENCFF793HCV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF289CWN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF793HCV 77123 ENCODE Processing Pipeline b429de9e53556a3e16cb976367d5fff4 https://www.encodeproject.org/files/ENCFF289CWN/@@download/ENCFF289CWN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF096WQD bigBed narrowPeak peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF075WCP 11431959 ENCODE Processing Pipeline f30b315f79bc50204938e231f56720e9 https://www.encodeproject.org/files/ENCFF096WQD/@@download/ENCFF096WQD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF000NRJ bam alignments ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRZ 1502759469 Richard Myers, HAIB f595b2f8fd9730f07315ed222fa3e1bd https://www.encodeproject.org/files/ENCFF000NRJ/@@download/ENCFF000NRJ.bam hg19 released biological replicates with identical biosample ENCFF000NRL bam alignments ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRX 1428977627 Richard Myers, HAIB 295d4669b37cf43c2825e58d37a9ea78 https://www.encodeproject.org/files/ENCFF000NRL/@@download/ENCFF000NRL.bam hg19 released biological replicates with identical biosample ENCFF000NRM bigBed broadPeak peaks ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVZ 299808 Richard Myers, HAIB 726f76ba212c409a7d59ff4cd01c6bcf https://www.encodeproject.org/files/ENCFF000NRM/@@download/ENCFF000NRM.bigBed hg19 released biological replicates with identical biosample ENCFF000NRN bigBed broadPeak peaks ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TWA 376090 Richard Myers, HAIB a93b8889843283f329735ed6e4f6482d https://www.encodeproject.org/files/ENCFF000NRN/@@download/ENCFF000NRN.bigBed hg19 released biological replicates with identical biosample ENCFF000NRP bigWig raw signal ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 1 1 156932396 Richard Myers, HAIB b97f6cc6fe581cbdab2787fe96650472 https://www.encodeproject.org/files/ENCFF000NRP/@@download/ENCFF000NRP.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NRR bigWig raw signal ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 2 1 135888114 Richard Myers, HAIB adbe4b9d820325b07b99cbfa6f7611aa https://www.encodeproject.org/files/ENCFF000NRR/@@download/ENCFF000NRR.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NRX fastq reads ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1479740006 Richard Myers, HAIB 68de6a135dfef7641defefa7019fcaf8 https://www.encodeproject.org/files/ENCFF000NRX/@@download/ENCFF000NRX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NRZ fastq reads ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1550110303 Richard Myers, HAIB a5df54e03e0b19d69042b2124d39ee0d https://www.encodeproject.org/files/ENCFF000NRZ/@@download/ENCFF000NRZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVZ bed broadPeak peaks ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 1 1 168580 Richard Myers, HAIB c3a9a790e5b847bc0b60fa1a5111da08 https://www.encodeproject.org/files/ENCFF001TVZ/@@download/ENCFF001TVZ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TWA bed broadPeak peaks ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 2 1 217859 Richard Myers, HAIB 9eb7a5695c71f1a9672c3f7674ab1097 https://www.encodeproject.org/files/ENCFF001TWA/@@download/ENCFF001TWA.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF539KTK bam unfiltered alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 100 ENCFF150KRT, ENCFF807MUK, ENCFF983NMP 5298355212 ENCODE Processing Pipeline f9f12724acecf7d755c02d6385b91a7e https://www.encodeproject.org/files/ENCFF539KTK/@@download/ENCFF539KTK.bam hg19 released low read depth ENCFF983NMP fastq reads ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF150KRT 2456903925 Michael Snyder, Stanford 7ee3a5694aa3efbee7bb30551bc84ee5 SRA:SRR5112316 https://www.encodeproject.org/files/ENCFF983NMP/@@download/ENCFF983NMP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF150KRT fastq reads ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF983NMP 2432910501 Michael Snyder, Stanford 9a67436920e1a3186929716d64c634f5 SRA:SRR5112316 https://www.encodeproject.org/files/ENCFF150KRT/@@download/ENCFF150KRT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF222XNY bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF150KRT, ENCFF807MUK, ENCFF983NMP 4394540487 ENCODE Processing Pipeline c6ab8e2c0382e85b7f40bcaee215deaf https://www.encodeproject.org/files/ENCFF222XNY/@@download/ENCFF222XNY.bam hg19 released low read depth ENCFF567LMF fastq reads ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF112ZYY 1997211657 Michael Snyder, Stanford 87327068f93c2ea72c929e388900b5b9 SRA:SRR5112315 https://www.encodeproject.org/files/ENCFF567LMF/@@download/ENCFF567LMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF112ZYY fastq reads ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF567LMF 2010563795 Michael Snyder, Stanford 769ea519bcabb23b4a02ba92a215e6c8 SRA:SRR5112315 https://www.encodeproject.org/files/ENCFF112ZYY/@@download/ENCFF112ZYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF185COP bam unfiltered alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 100 ENCFF150KRT, ENCFF643CGH, ENCFF983NMP 5302284645 ENCODE Processing Pipeline ac47919caa7ba4c7a045e1e6c7bfd519 https://www.encodeproject.org/files/ENCFF185COP/@@download/ENCFF185COP.bam GRCh38 released low read depth ENCFF910SML bam unfiltered alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 100 ENCFF112ZYY, ENCFF567LMF, ENCFF807MUK 4380697620 ENCODE Processing Pipeline 83c615db7a0037ff6c0d59f0ee69e9f9 https://www.encodeproject.org/files/ENCFF910SML/@@download/ENCFF910SML.bam hg19 released low read depth ENCFF733UEY bam unfiltered alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 100 ENCFF112ZYY, ENCFF567LMF, ENCFF643CGH 4384305777 ENCODE Processing Pipeline 5b6da1fe47d0bfb87749d4f5ae9cb659 https://www.encodeproject.org/files/ENCFF733UEY/@@download/ENCFF733UEY.bam GRCh38 released low read depth ENCFF079SPF bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 100 ENCFF112ZYY, ENCFF567LMF, ENCFF643CGH 3657861769 ENCODE Processing Pipeline 4b40ac83fce8751438c212e5c994a836 https://www.encodeproject.org/files/ENCFF079SPF/@@download/ENCFF079SPF.bam GRCh38 released low read depth ENCFF738QLQ bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 100 ENCFF150KRT, ENCFF643CGH, ENCFF983NMP 4395963823 ENCODE Processing Pipeline f17219ff3f8dddea7165424b402879a8 https://www.encodeproject.org/files/ENCFF738QLQ/@@download/ENCFF738QLQ.bam GRCh38 released low read depth ENCFF880NAD bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 100 ENCFF112ZYY, ENCFF567LMF, ENCFF807MUK 3656437678 ENCODE Processing Pipeline 6f933604ee9fd15c5029f91d43f38bb3 https://www.encodeproject.org/files/ENCFF880NAD/@@download/ENCFF880NAD.bam hg19 released low read depth ENCFF691DEF bigWig signal p-value ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF222XNY 1151558318 ENCODE Processing Pipeline c235178452ada558a0de334b4b7505e0 https://www.encodeproject.org/files/ENCFF691DEF/@@download/ENCFF691DEF.bigWig hg19 released low read depth ENCFF948QZD bigWig signal p-value ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF880NAD 1131280160 ENCODE Processing Pipeline 64e22753e78ec7da7f05e61feb80f01c https://www.encodeproject.org/files/ENCFF948QZD/@@download/ENCFF948QZD.bigWig hg19 released low read depth ENCFF431DNF bigWig signal p-value ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF222XNY, ENCFF581ZJL, ENCFF880NAD 1960028006 ENCODE Processing Pipeline 7ff54719e9bd045e80cb31e2d1a6c6e6 https://www.encodeproject.org/files/ENCFF431DNF/@@download/ENCFF431DNF.bigWig hg19 released low read depth ENCFF382KQX bigWig fold change over control ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF880NAD 1072338100 ENCODE Processing Pipeline 819927d55703632cc53eb9a8da3471e4 https://www.encodeproject.org/files/ENCFF382KQX/@@download/ENCFF382KQX.bigWig hg19 released low read depth ENCFF367VKM bigWig fold change over control ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF222XNY 1127881513 ENCODE Processing Pipeline 0007d644b1c36567903423bd56c99d95 https://www.encodeproject.org/files/ENCFF367VKM/@@download/ENCFF367VKM.bigWig hg19 released low read depth ENCFF282HZD bigWig fold change over control ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF222XNY, ENCFF581ZJL, ENCFF880NAD 2051480563 ENCODE Processing Pipeline 307130e2b756edcaa36f4f92a9926a5a https://www.encodeproject.org/files/ENCFF282HZD/@@download/ENCFF282HZD.bigWig hg19 released low read depth ENCFF261OOY bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF880NAD 6789096 ENCODE Processing Pipeline e743490d7df20591f455f87097e4306e https://www.encodeproject.org/files/ENCFF261OOY/@@download/ENCFF261OOY.bed.gz hg19 released low read depth ENCFF303OST bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF222XNY 6744989 ENCODE Processing Pipeline cdfc6e5c799192f140ca4b3d9f0347cc https://www.encodeproject.org/files/ENCFF303OST/@@download/ENCFF303OST.bed.gz hg19 released low read depth ENCFF121KKJ bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF222XNY, ENCFF581ZJL, ENCFF880NAD 7245731 ENCODE Processing Pipeline e7a3c665f0be890bf5ebbc1b4c449bcb https://www.encodeproject.org/files/ENCFF121KKJ/@@download/ENCFF121KKJ.bed.gz hg19 released low read depth ENCFF716SGL bigBed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF303OST 13333925 ENCODE Processing Pipeline 8608e1da0fb077ca44167c7437409c2f https://www.encodeproject.org/files/ENCFF716SGL/@@download/ENCFF716SGL.bigBed hg19 released low read depth ENCFF484GNO bigBed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF261OOY 13190507 ENCODE Processing Pipeline 855ceaae6dd261f32aeeee07c34f4d5a https://www.encodeproject.org/files/ENCFF484GNO/@@download/ENCFF484GNO.bigBed hg19 released low read depth ENCFF877XUZ bigBed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF121KKJ 13161869 ENCODE Processing Pipeline 0137d629e6dcaa6ffd1d82659d316991 https://www.encodeproject.org/files/ENCFF877XUZ/@@download/ENCFF877XUZ.bigBed hg19 released low read depth ENCFF549QFS bigBed narrowPeak conservative idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF608XIU 505663 ENCODE Processing Pipeline b2056482a4090c425eafd89d6e04027d https://www.encodeproject.org/files/ENCFF549QFS/@@download/ENCFF549QFS.bigBed hg19 released low read depth ENCFF608XIU bed narrowPeak conservative idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF121KKJ, ENCFF261OOY, ENCFF303OST 256896 ENCODE Processing Pipeline f01a481112333050d21fca16938e7d2a https://www.encodeproject.org/files/ENCFF608XIU/@@download/ENCFF608XIU.bed.gz hg19 released low read depth ENCFF049CRW bed narrowPeak optimal idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF121KKJ, ENCFF261OOY, ENCFF303OST 364868 ENCODE Processing Pipeline 365d731ad998698c1878c914037ef74d https://www.encodeproject.org/files/ENCFF049CRW/@@download/ENCFF049CRW.bed.gz hg19 released low read depth ENCFF585ZKO bigBed narrowPeak optimal idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF049CRW 804466 ENCODE Processing Pipeline fe4830ca9e9c56a8a7a43e6a1ee64d9a https://www.encodeproject.org/files/ENCFF585ZKO/@@download/ENCFF585ZKO.bigBed hg19 released low read depth ENCFF421BQO bigWig signal p-value ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF079SPF, ENCFF910IKB 1200876977 ENCODE Processing Pipeline 3f94557cc0794630946030f504ccd7ff https://www.encodeproject.org/files/ENCFF421BQO/@@download/ENCFF421BQO.bigWig GRCh38 released low read depth ENCFF234TYY bigWig signal p-value ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF738QLQ 936172037 ENCODE Processing Pipeline a88eabc805f39716501452d002fe2ae9 https://www.encodeproject.org/files/ENCFF234TYY/@@download/ENCFF234TYY.bigWig GRCh38 released low read depth ENCFF767BCZ bigWig signal p-value ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF079SPF, ENCFF227IZS, ENCFF738QLQ, ENCFF910IKB 1866939162 ENCODE Processing Pipeline 8d24dbf590fc236111255deaec56b02e https://www.encodeproject.org/files/ENCFF767BCZ/@@download/ENCFF767BCZ.bigWig GRCh38 released low read depth ENCFF404BME bigWig fold change over control ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF079SPF, ENCFF910IKB 1068950436 ENCODE Processing Pipeline d26475ff555dbc3717d968bb764e1cc8 https://www.encodeproject.org/files/ENCFF404BME/@@download/ENCFF404BME.bigWig GRCh38 released low read depth ENCFF858XPT bigWig fold change over control ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF738QLQ 1130420238 ENCODE Processing Pipeline 028b323c51e80161930a66fc94743a5d https://www.encodeproject.org/files/ENCFF858XPT/@@download/ENCFF858XPT.bigWig GRCh38 released low read depth ENCFF792FZX bigWig fold change over control ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF079SPF, ENCFF227IZS, ENCFF738QLQ, ENCFF910IKB 2067899964 ENCODE Processing Pipeline 6ecb0b41c8e9f9d596137ea6af0edc7e https://www.encodeproject.org/files/ENCFF792FZX/@@download/ENCFF792FZX.bigWig GRCh38 released low read depth ENCFF227UBK bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF079SPF, ENCFF910IKB 6726204 ENCODE Processing Pipeline bee76617ba767b38019fbc121fb22151 https://www.encodeproject.org/files/ENCFF227UBK/@@download/ENCFF227UBK.bed.gz GRCh38 released low read depth ENCFF668TXD bigBed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF382EKG 13340380 ENCODE Processing Pipeline cc152684e8de6d4d31fdc10f4c9fe2da https://www.encodeproject.org/files/ENCFF668TXD/@@download/ENCFF668TXD.bigBed GRCh38 released low read depth ENCFF382EKG bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF738QLQ 6620263 ENCODE Processing Pipeline bbad40f9dd3e8612040226f035b26b81 https://www.encodeproject.org/files/ENCFF382EKG/@@download/ENCFF382EKG.bed.gz GRCh38 released low read depth ENCFF720KEL bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF079SPF, ENCFF227IZS, ENCFF738QLQ, ENCFF910IKB 7236012 ENCODE Processing Pipeline f2c77749ceb2dd4cc3bd3c65d944c878 https://www.encodeproject.org/files/ENCFF720KEL/@@download/ENCFF720KEL.bed.gz GRCh38 released low read depth ENCFF610UHE bigBed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF227UBK 13217941 ENCODE Processing Pipeline 60e90e1c7fddf5f6d28a57f20cbecff5 https://www.encodeproject.org/files/ENCFF610UHE/@@download/ENCFF610UHE.bigBed GRCh38 released low read depth ENCFF129XAS bigBed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF720KEL 13169385 ENCODE Processing Pipeline 2177e74796e4704f64ec4409bb2d6e54 https://www.encodeproject.org/files/ENCFF129XAS/@@download/ENCFF129XAS.bigBed GRCh38 released low read depth ENCFF950TOJ bed narrowPeak optimal idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227UBK, ENCFF382EKG, ENCFF419RSJ, ENCFF720KEL 369995 ENCODE Processing Pipeline 10336ca13796bd6de0efef8d3ed56c0e https://www.encodeproject.org/files/ENCFF950TOJ/@@download/ENCFF950TOJ.bed.gz GRCh38 released low read depth ENCFF483ILL bigBed narrowPeak conservative idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF857AXB 511055 ENCODE Processing Pipeline 4b177c44a286b3bc2a46d111e07e5041 https://www.encodeproject.org/files/ENCFF483ILL/@@download/ENCFF483ILL.bigBed GRCh38 released low read depth ENCFF857AXB bed narrowPeak conservative idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227UBK, ENCFF382EKG, ENCFF419RSJ, ENCFF720KEL 258667 ENCODE Processing Pipeline 230ff7a71ccd06daa57122123d4550da https://www.encodeproject.org/files/ENCFF857AXB/@@download/ENCFF857AXB.bed.gz GRCh38 released low read depth ENCFF812VCP bigBed narrowPeak optimal idr thresholded peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF950TOJ 816683 ENCODE Processing Pipeline 3e7761c378e126566884c82c02f6fd44 https://www.encodeproject.org/files/ENCFF812VCP/@@download/ENCFF812VCP.bigBed GRCh38 released low read depth ENCFF000ZDL bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPJ 211206 Peggy Farnham, USC 7bebeb5d0afc64f4b78251e7aa304da9 https://www.encodeproject.org/files/ENCFF000ZDL/@@download/ENCFF000ZDL.bigBed hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZDM bigWig signal ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 395495819 Peggy Farnham, USC 95ba0b84c89f95f0adabdc16ad5c7015 https://www.encodeproject.org/files/ENCFF000ZDM/@@download/ENCFF000ZDM.bigWig hg19 archived borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZDN bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZEJ 643150126 Peggy Farnham, USC 9702f59bd9f872105fabb16bc6a058dd https://www.encodeproject.org/files/ENCFF000ZDN/@@download/ENCFF000ZDN.bam hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZDO bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZEK 610506402 Peggy Farnham, USC bf0009aa1cb277412ecaa1b84dc60758 https://www.encodeproject.org/files/ENCFF000ZDO/@@download/ENCFF000ZDO.bam hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZEJ fastq reads ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 518093065 Peggy Farnham, USC 347902ae6684d452b633b42e910e5753 https://www.encodeproject.org/files/ENCFF000ZEJ/@@download/ENCFF000ZEJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZEK fastq reads ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 478956711 Peggy Farnham, USC 5fc336059c08b7b6de7e8c92ff207ec7 https://www.encodeproject.org/files/ENCFF000ZEK/@@download/ENCFF000ZEK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VPJ bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 76019 Peggy Farnham, USC ef2a46485852ced4e03750fda5db807e https://www.encodeproject.org/files/ENCFF001VPJ/@@download/ENCFF001VPJ.bed.gz hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CYQ bed narrowPeak optimal idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 104777 ENCODE Consortium Analysis Working Group 940cef4ff84d4b47a11d8fd9e57f53ca https://www.encodeproject.org/files/ENCFF002CYQ/@@download/ENCFF002CYQ.bed.gz hg19 archived borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF726FSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYQ 273588 ENCODE Consortium 8e7072590662161cb1fa27f47a56081f https://www.encodeproject.org/files/ENCFF726FSZ/@@download/ENCFF726FSZ.bigBed hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF798NNI bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF633CMO 1647800 ENCODE Processing Pipeline 67907a147a81318ec5289b2a9c391116 https://www.encodeproject.org/files/ENCFF798NNI/@@download/ENCFF798NNI.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF329XCJ bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF139WUV, ENCFF355SGP, ENCFF633CMO 4680067 ENCODE Processing Pipeline e200ffa5f59600afae960e5334703e5a https://www.encodeproject.org/files/ENCFF329XCJ/@@download/ENCFF329XCJ.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF243GTZ bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF329XCJ 10831889 ENCODE Processing Pipeline 343c70b21386019dd8250f73a9638dfc https://www.encodeproject.org/files/ENCFF243GTZ/@@download/ENCFF243GTZ.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF629EQZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF635XCI 212598 ENCODE Processing Pipeline 2722c92451f96a22468d7e402ffd38d0 https://www.encodeproject.org/files/ENCFF629EQZ/@@download/ENCFF629EQZ.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF633CMO bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZEJ, ENCFF643CGH 293165137 ENCODE Processing Pipeline 27240f623a95b1593b7ed5612e00fa71 https://www.encodeproject.org/files/ENCFF633CMO/@@download/ENCFF633CMO.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF606IAN bigWig signal p-value ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF139WUV, ENCFF355SGP 379355874 ENCODE Processing Pipeline 402b4768c6388e7318468bbcf79fa2c1 https://www.encodeproject.org/files/ENCFF606IAN/@@download/ENCFF606IAN.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF477WFX bigWig fold change over control ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF139WUV, ENCFF355SGP, ENCFF633CMO 286635602 ENCODE Processing Pipeline a6854abc3d224aa8a22bc96fb6bf7090 https://www.encodeproject.org/files/ENCFF477WFX/@@download/ENCFF477WFX.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF744IBC bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF798NNI 3776167 ENCODE Processing Pipeline ec517ce75460bd284f1a9720284abcf2 https://www.encodeproject.org/files/ENCFF744IBC/@@download/ENCFF744IBC.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF838CZP bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF256EZU 7437798 ENCODE Processing Pipeline 3e615f111770eb48d21e3cc4dc732579 https://www.encodeproject.org/files/ENCFF838CZP/@@download/ENCFF838CZP.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF632ZHY bed narrowPeak conservative idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF256EZU, ENCFF329XCJ, ENCFF419RSJ, ENCFF798NNI 75768 ENCODE Processing Pipeline 46f3963e5765570315a72682c2f16aaf https://www.encodeproject.org/files/ENCFF632ZHY/@@download/ENCFF632ZHY.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF741LGU bam unfiltered alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZEJ, ENCFF643CGH 645832794 ENCODE Processing Pipeline 3b96fcddecd71679943eb7031c346038 https://www.encodeproject.org/files/ENCFF741LGU/@@download/ENCFF741LGU.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF139WUV bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZEK, ENCFF643CGH 283706447 ENCODE Processing Pipeline dd62533544a4306b6eb50fb31e8af518 https://www.encodeproject.org/files/ENCFF139WUV/@@download/ENCFF139WUV.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF142INJ bigWig fold change over control ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF633CMO 140176068 ENCODE Processing Pipeline 3beaa87efc1296ce9446e06a792b9baa https://www.encodeproject.org/files/ENCFF142INJ/@@download/ENCFF142INJ.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF641BFU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF632ZHY 187434 ENCODE Processing Pipeline 5c028beaea17ddf7e0642be76faee3cd https://www.encodeproject.org/files/ENCFF641BFU/@@download/ENCFF641BFU.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF670LXM bam unfiltered alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZEK, ENCFF643CGH 612485045 ENCODE Processing Pipeline 6e89aabbb89aaf07611535b671f5c95e https://www.encodeproject.org/files/ENCFF670LXM/@@download/ENCFF670LXM.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF553CWG bigWig signal p-value ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF633CMO 372939489 ENCODE Processing Pipeline e2984e010e1cb8890f368e06daabd1f6 https://www.encodeproject.org/files/ENCFF553CWG/@@download/ENCFF553CWG.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF577NSA bigWig signal p-value ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF139WUV, ENCFF355SGP, ENCFF633CMO 463924213 ENCODE Processing Pipeline 2010d6e0d2b6965acecfbb37b08d789f https://www.encodeproject.org/files/ENCFF577NSA/@@download/ENCFF577NSA.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF346YID bigWig fold change over control ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF139WUV, ENCFF355SGP 167601226 ENCODE Processing Pipeline d4d1af1dbfd68e11dc88c692e11c1312 https://www.encodeproject.org/files/ENCFF346YID/@@download/ENCFF346YID.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF256EZU bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF139WUV, ENCFF355SGP 3120021 ENCODE Processing Pipeline 5ecf6d529f6490697598a450dd91da03 https://www.encodeproject.org/files/ENCFF256EZU/@@download/ENCFF256EZU.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF635XCI bed narrowPeak optimal idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF256EZU, ENCFF329XCJ, ENCFF419RSJ, ENCFF798NNI 93625 ENCODE Processing Pipeline 4545455201e3285ee2249fc874722330 https://www.encodeproject.org/files/ENCFF635XCI/@@download/ENCFF635XCI.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF566NKP bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZEK, ENCFF807MUK 284142408 ENCODE Processing Pipeline d28da66381c066f47a0d7133fd3dfee5 https://www.encodeproject.org/files/ENCFF566NKP/@@download/ENCFF566NKP.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF397BXS bam unfiltered alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZEJ, ENCFF807MUK 644219493 ENCODE Processing Pipeline db9348d5dabc863ec58e1b0da0a2f07e https://www.encodeproject.org/files/ENCFF397BXS/@@download/ENCFF397BXS.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF931LTD bigWig signal p-value ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF193QAR 437772632 ENCODE Processing Pipeline f24a2555e4aa4878e50deee6d415fa53 https://www.encodeproject.org/files/ENCFF931LTD/@@download/ENCFF931LTD.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF247BYG bigWig signal p-value ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF193QAR, ENCFF566NKP 492469925 ENCODE Processing Pipeline f5ea4513f3354b544021b846e82254e3 https://www.encodeproject.org/files/ENCFF247BYG/@@download/ENCFF247BYG.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF193QAR bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZEJ, ENCFF807MUK 293535188 ENCODE Processing Pipeline 8be94d5d41c2c44052f16a546987a860 https://www.encodeproject.org/files/ENCFF193QAR/@@download/ENCFF193QAR.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF274FVJ bam unfiltered alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZEK, ENCFF807MUK 611211458 ENCODE Processing Pipeline 937788457b87c665f8dc24e190d6bdcb https://www.encodeproject.org/files/ENCFF274FVJ/@@download/ENCFF274FVJ.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF829HEO bigWig signal p-value ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF566NKP 337456366 ENCODE Processing Pipeline 34d9b8695ba50522452e9ba2585dde31 https://www.encodeproject.org/files/ENCFF829HEO/@@download/ENCFF829HEO.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF057PQP bigWig fold change over control ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF566NKP 162354809 ENCODE Processing Pipeline b9127c7da4a43c51c1982f2a31c107f9 https://www.encodeproject.org/files/ENCFF057PQP/@@download/ENCFF057PQP.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF445VEZ bigWig fold change over control ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF193QAR, ENCFF566NKP 278414568 ENCODE Processing Pipeline 26a7a480d1b2b0b2b41275d5264e392e https://www.encodeproject.org/files/ENCFF445VEZ/@@download/ENCFF445VEZ.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF211PND bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF566NKP 3133805 ENCODE Processing Pipeline 7b3c014da2fb8c5e41950d2bd25f182f https://www.encodeproject.org/files/ENCFF211PND/@@download/ENCFF211PND.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF951GSR bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF899XEM 3908453 ENCODE Processing Pipeline 4893cd51df56ef42ca623e82456c2d8c https://www.encodeproject.org/files/ENCFF951GSR/@@download/ENCFF951GSR.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF557DSM bed narrowPeak optimal idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF211PND, ENCFF228AYO, ENCFF899XEM 93049 ENCODE Processing Pipeline cf8ffec94a9b83f40812443c565a6a17 https://www.encodeproject.org/files/ENCFF557DSM/@@download/ENCFF557DSM.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF629CAA bigWig fold change over control ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF193QAR 139759951 ENCODE Processing Pipeline 87f378d227445039dd82910e4f93fb6e https://www.encodeproject.org/files/ENCFF629CAA/@@download/ENCFF629CAA.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF853DHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF291MOZ 190016 ENCODE Processing Pipeline 7d01813edfbee67831648f80be09c5c5 https://www.encodeproject.org/files/ENCFF853DHJ/@@download/ENCFF853DHJ.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF899XEM bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF193QAR 1723059 ENCODE Processing Pipeline 682a1f74ecb0c3f653a3f0f457a3fdb1 https://www.encodeproject.org/files/ENCFF899XEM/@@download/ENCFF899XEM.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF228AYO bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF193QAR, ENCFF566NKP 4710456 ENCODE Processing Pipeline c5548561077713c5247041e54aeb05b0 https://www.encodeproject.org/files/ENCFF228AYO/@@download/ENCFF228AYO.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF133XFA bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF228AYO 10822633 ENCODE Processing Pipeline e91c9eb7b914a84fcc9cf7a8341ff6af https://www.encodeproject.org/files/ENCFF133XFA/@@download/ENCFF133XFA.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF909ZGB bigBed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF211PND 7458676 ENCODE Processing Pipeline 00f76072dea3239f37cc9bc7a42c5134 https://www.encodeproject.org/files/ENCFF909ZGB/@@download/ENCFF909ZGB.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF291MOZ bed narrowPeak conservative idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF211PND, ENCFF228AYO, ENCFF899XEM 78222 ENCODE Processing Pipeline 0b12a9c311566321b659238e5df6c40b https://www.encodeproject.org/files/ENCFF291MOZ/@@download/ENCFF291MOZ.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF631HBE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF557DSM 209978 ENCODE Processing Pipeline 80199852ce19ad0b3a3a2752d2d13fca https://www.encodeproject.org/files/ENCFF631HBE/@@download/ENCFF631HBE.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF124AQZ fastq reads ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF841SWR 2861039083 Michael Snyder, Stanford 420a1d983d6882370579b6cbab0e261c https://www.encodeproject.org/files/ENCFF124AQZ/@@download/ENCFF124AQZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released experiment not submitted to GEO partially characterized antibody ENCFF841SWR fastq reads ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF124AQZ 2827169854 Michael Snyder, Stanford 71ecb0b19b8c75f41e17230ffe754f8a https://www.encodeproject.org/files/ENCFF841SWR/@@download/ENCFF841SWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released experiment not submitted to GEO partially characterized antibody ENCFF413ICF fastq reads ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF744BML 2702508314 Michael Snyder, Stanford 467187483c0b750915d70f146de00c14 https://www.encodeproject.org/files/ENCFF413ICF/@@download/ENCFF413ICF.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released experiment not submitted to GEO partially characterized antibody ENCFF744BML fastq reads ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF413ICF 2737742272 Michael Snyder, Stanford 58bd4c89c403a4f5b468c873819429e2 https://www.encodeproject.org/files/ENCFF744BML/@@download/ENCFF744BML.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released experiment not submitted to GEO partially characterized antibody ENCFF100HCY bam unfiltered alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 100 ENCFF413ICF, ENCFF744BML, ENCFF807MUK 5842781094 ENCODE Processing Pipeline 0f86189e58e02f2bca60f8bb78fc872f https://www.encodeproject.org/files/ENCFF100HCY/@@download/ENCFF100HCY.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF861VRE bam unfiltered alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 100 ENCFF124AQZ, ENCFF643CGH, ENCFF841SWR 6134536427 ENCODE Processing Pipeline 2a81910b16aaca5373d0362531ae4256 https://www.encodeproject.org/files/ENCFF861VRE/@@download/ENCFF861VRE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF409AIZ bam unfiltered alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 100 ENCFF413ICF, ENCFF643CGH, ENCFF744BML 5843548939 ENCODE Processing Pipeline 5ff5a37091ea72b17e5c9b5768a8c2a8 https://www.encodeproject.org/files/ENCFF409AIZ/@@download/ENCFF409AIZ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF295UBW bam unfiltered alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 100 ENCFF124AQZ, ENCFF807MUK, ENCFF841SWR 6132496034 ENCODE Processing Pipeline 266bb6590c7b7608518f63367446af2a https://www.encodeproject.org/files/ENCFF295UBW/@@download/ENCFF295UBW.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF112ARH bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 100 ENCFF413ICF, ENCFF744BML, ENCFF807MUK 4663355962 ENCODE Processing Pipeline bb66dd728b1da0f0518fdd662a5f7742 https://www.encodeproject.org/files/ENCFF112ARH/@@download/ENCFF112ARH.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF517SOJ bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 100 ENCFF124AQZ, ENCFF807MUK, ENCFF841SWR 4925213448 ENCODE Processing Pipeline 5c5844941dc157da7b85127c9839ea4c https://www.encodeproject.org/files/ENCFF517SOJ/@@download/ENCFF517SOJ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF090FVY bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 100 ENCFF124AQZ, ENCFF643CGH, ENCFF841SWR 4925741703 ENCODE Processing Pipeline 3a284af5f269481ad252e4f4f69667b8 https://www.encodeproject.org/files/ENCFF090FVY/@@download/ENCFF090FVY.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF287IHQ bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 100 ENCFF413ICF, ENCFF643CGH, ENCFF744BML 4663184474 ENCODE Processing Pipeline 9672737a0367355d9c8b9bbf470c12e5 https://www.encodeproject.org/files/ENCFF287IHQ/@@download/ENCFF287IHQ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF685ZNO bigWig fold change over control ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 1419270602 ENCODE Processing Pipeline c639bbd5b297f631febfd5c473590f6f https://www.encodeproject.org/files/ENCFF685ZNO/@@download/ENCFF685ZNO.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF036IFC bigWig signal p-value ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 1915325964 ENCODE Processing Pipeline 1d40ff61b0b95d7bc728f20031bb817e https://www.encodeproject.org/files/ENCFF036IFC/@@download/ENCFF036IFC.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF085VSD bigWig signal p-value ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 1313263699 ENCODE Processing Pipeline 4865051d531c2f6c2143a59802c6d79d https://www.encodeproject.org/files/ENCFF085VSD/@@download/ENCFF085VSD.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF923CXM bigBed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF306BVA 11295009 ENCODE Processing Pipeline a0aa8a88b511b03afd8883b2894093fd https://www.encodeproject.org/files/ENCFF923CXM/@@download/ENCFF923CXM.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF128DRH bed narrowPeak conservative idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF088HLB, ENCFF306BVA, ENCFF449TFM 240896 ENCODE Processing Pipeline 0ac32b9b5101149da7cc226f465ab4c0 https://www.encodeproject.org/files/ENCFF128DRH/@@download/ENCFF128DRH.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF890YOP bigWig signal p-value ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV 1183045344 ENCODE Processing Pipeline 8387de8f407fd7d74762cca65605e922 https://www.encodeproject.org/files/ENCFF890YOP/@@download/ENCFF890YOP.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF905ZIF bigWig fold change over control ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 1948498826 ENCODE Processing Pipeline bba2363c8343667f0021deb3472432bb https://www.encodeproject.org/files/ENCFF905ZIF/@@download/ENCFF905ZIF.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF088HLB bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 7228456 ENCODE Processing Pipeline c979bcc5b80b613d1f06c8a5b530f1fc https://www.encodeproject.org/files/ENCFF088HLB/@@download/ENCFF088HLB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF672GNT bigBed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF449TFM 13337793 ENCODE Processing Pipeline 6ada7b7e378917da7ef3b003c13c719c https://www.encodeproject.org/files/ENCFF672GNT/@@download/ENCFF672GNT.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF378QZP bigBed narrowPeak optimal idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF948YVM 641525 ENCODE Processing Pipeline 4be7d864d18e9bd2848726a945efd9d8 https://www.encodeproject.org/files/ENCFF378QZP/@@download/ENCFF378QZP.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF306BVA bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 6500985 ENCODE Processing Pipeline bd57724400e546636bf4a80368f9bf47 https://www.encodeproject.org/files/ENCFF306BVA/@@download/ENCFF306BVA.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF147VCF bigBed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF088HLB 13256662 ENCODE Processing Pipeline feedc41a7fff746734f53d1a929097d3 https://www.encodeproject.org/files/ENCFF147VCF/@@download/ENCFF147VCF.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF647BCR bigWig fold change over control ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV 1382527532 ENCODE Processing Pipeline a9d4acc3c91cd36c45e3528bab221706 https://www.encodeproject.org/files/ENCFF647BCR/@@download/ENCFF647BCR.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF449TFM bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV 6864443 ENCODE Processing Pipeline 2e9eed6ee7a02a14ffa6427b2765eabf https://www.encodeproject.org/files/ENCFF449TFM/@@download/ENCFF449TFM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF455LRK bigBed narrowPeak conservative idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF128DRH 558366 ENCODE Processing Pipeline 839241fa4e25e2b864ac688009ce6f8f https://www.encodeproject.org/files/ENCFF455LRK/@@download/ENCFF455LRK.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF948YVM bed narrowPeak optimal idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF088HLB, ENCFF306BVA, ENCFF449TFM 290718 ENCODE Processing Pipeline 71944dd6288fae450b528c9a98c7ed04 https://www.encodeproject.org/files/ENCFF948YVM/@@download/ENCFF948YVM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF510JJB bigBed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF213DBR 13279940 ENCODE Processing Pipeline 7561bc1b1b16e3e26f212e332b0ac559 https://www.encodeproject.org/files/ENCFF510JJB/@@download/ENCFF510JJB.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF518UFI bigWig signal p-value ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF287IHQ, ENCFF720AUK, ENCFF796JTX 1462212799 ENCODE Processing Pipeline 18b8dc5eef955afee585f18cd2056189 https://www.encodeproject.org/files/ENCFF518UFI/@@download/ENCFF518UFI.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF805WYE bigBed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF866ZDE 11318330 ENCODE Processing Pipeline 28203fea066203ad30b3e91465d85918 https://www.encodeproject.org/files/ENCFF805WYE/@@download/ENCFF805WYE.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF825CTO bigWig signal p-value ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF090FVY, ENCFF720AUK, ENCFF796JTX 1440351957 ENCODE Processing Pipeline 5bf1d53ff02111682920aec559f5bb3e https://www.encodeproject.org/files/ENCFF825CTO/@@download/ENCFF825CTO.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF559ABR bigWig signal p-value ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF090FVY, ENCFF287IHQ, ENCFF720AUK, ENCFF796JTX 1926520013 ENCODE Processing Pipeline ed79b5e8c06a32d701957dcbb2b1b85b https://www.encodeproject.org/files/ENCFF559ABR/@@download/ENCFF559ABR.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF690HFK bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF287IHQ, ENCFF720AUK, ENCFF796JTX 6868189 ENCODE Processing Pipeline 670bd59f14412f70fed6f29e35537963 https://www.encodeproject.org/files/ENCFF690HFK/@@download/ENCFF690HFK.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF206OOF bigBed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF690HFK 13359512 ENCODE Processing Pipeline d534f42d3dd2d5955ee18b3a7d50aadd https://www.encodeproject.org/files/ENCFF206OOF/@@download/ENCFF206OOF.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF230SJN bigWig fold change over control ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF090FVY, ENCFF720AUK, ENCFF796JTX 1398542371 ENCODE Processing Pipeline b1518ec061ae6e539320de0789f7b9fe https://www.encodeproject.org/files/ENCFF230SJN/@@download/ENCFF230SJN.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF086UGB bigWig fold change over control ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF287IHQ, ENCFF720AUK, ENCFF796JTX 1375378225 ENCODE Processing Pipeline 70f7824df189de93c2644d3dc7c6866e https://www.encodeproject.org/files/ENCFF086UGB/@@download/ENCFF086UGB.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF283FON bigWig fold change over control ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF090FVY, ENCFF287IHQ, ENCFF720AUK, ENCFF796JTX 1960635494 ENCODE Processing Pipeline 385291fdc0279a913b80ecb9ff683d86 https://www.encodeproject.org/files/ENCFF283FON/@@download/ENCFF283FON.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF762GKR bed narrowPeak conservative idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF213DBR, ENCFF419RSJ, ENCFF690HFK, ENCFF866ZDE 244040 ENCODE Processing Pipeline c65abb0473329d9843bbd2ef36f2efd4 https://www.encodeproject.org/files/ENCFF762GKR/@@download/ENCFF762GKR.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF866ZDE bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF090FVY, ENCFF720AUK, ENCFF796JTX 6508836 ENCODE Processing Pipeline 3e80602e1657a07541079417179beff0 https://www.encodeproject.org/files/ENCFF866ZDE/@@download/ENCFF866ZDE.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF213DBR bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF090FVY, ENCFF287IHQ, ENCFF720AUK, ENCFF796JTX 7238538 ENCODE Processing Pipeline 27aa0611abf717d1e58313eb5a6768dc https://www.encodeproject.org/files/ENCFF213DBR/@@download/ENCFF213DBR.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF259HUS bed narrowPeak optimal idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF213DBR, ENCFF419RSJ, ENCFF690HFK, ENCFF866ZDE 292869 ENCODE Processing Pipeline 0d27fb83c8e396f6d6f8a91fe5110ed1 https://www.encodeproject.org/files/ENCFF259HUS/@@download/ENCFF259HUS.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF421QRG bigBed narrowPeak conservative idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF762GKR 566642 ENCODE Processing Pipeline 6449adec7a97b40fc1ef56c1b2c0801f https://www.encodeproject.org/files/ENCFF421QRG/@@download/ENCFF421QRG.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF391TLZ bigBed narrowPeak optimal idr thresholded peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF259HUS 649234 ENCODE Processing Pipeline 7655dc9b77641bfd6f00ac4becc8ec5f https://www.encodeproject.org/files/ENCFF391TLZ/@@download/ENCFF391TLZ.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF493MHV bam unfiltered alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF807MUK, ENCFF996PYT 2474445554 ENCODE Processing Pipeline 81f01e11c1acac134a910a09ef6c7002 https://www.encodeproject.org/files/ENCFF493MHV/@@download/ENCFF493MHV.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF765QGX bam unfiltered alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF807MUK, ENCFF876KCK 1914632733 ENCODE Processing Pipeline c01bda195bfa25ae0c3278dbc2d8a37d https://www.encodeproject.org/files/ENCFF765QGX/@@download/ENCFF765QGX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF988XFX bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF807MUK, ENCFF876KCK 1414385631 ENCODE Processing Pipeline 9793e0341d1da85c4fe353b7ffa7afc6 https://www.encodeproject.org/files/ENCFF988XFX/@@download/ENCFF988XFX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF910AAQ bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF807MUK, ENCFF996PYT 1779048513 ENCODE Processing Pipeline 8437ba00b4d4c264d3f5adb7df7bacb7 https://www.encodeproject.org/files/ENCFF910AAQ/@@download/ENCFF910AAQ.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF292TGM bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF807CUF, ENCFF988XFX 1033912824 ENCODE Processing Pipeline 9b37ee772daa7d59653ef888e36ae0cc https://www.encodeproject.org/files/ENCFF292TGM/@@download/ENCFF292TGM.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF109NVQ bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF807CUF, ENCFF988XFX 1103703763 ENCODE Processing Pipeline cbf56123a1968121043679147755c859 https://www.encodeproject.org/files/ENCFF109NVQ/@@download/ENCFF109NVQ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF515NYK bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF807CUF, ENCFF988XFX 6444026 ENCODE Processing Pipeline fedb647c9ac83e7032358eaee3cc448c https://www.encodeproject.org/files/ENCFF515NYK/@@download/ENCFF515NYK.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF585SIV bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF025EPQ 13595356 ENCODE Processing Pipeline 86f51168cb304435562bd0eb674549a4 https://www.encodeproject.org/files/ENCFF585SIV/@@download/ENCFF585SIV.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF811WQQ bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ, ENCFF988XFX 6977453 ENCODE Processing Pipeline e82b451bcf8658967ee048da67a7d525 https://www.encodeproject.org/files/ENCFF811WQQ/@@download/ENCFF811WQQ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF025EPQ bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ 6294877 ENCODE Processing Pipeline 6443909ca96461f1eea1cae41e00b2dc https://www.encodeproject.org/files/ENCFF025EPQ/@@download/ENCFF025EPQ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF337BVC bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF811WQQ 13499940 ENCODE Processing Pipeline 15091cba8c9daa1f60a3a9331061aa1a https://www.encodeproject.org/files/ENCFF337BVC/@@download/ENCFF337BVC.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF794LJO bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF515NYK 13509510 ENCODE Processing Pipeline ba310f4b7342da235578cf1ac6c795d2 https://www.encodeproject.org/files/ENCFF794LJO/@@download/ENCFF794LJO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF967QUY bed narrowPeak conservative idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF025EPQ, ENCFF515NYK, ENCFF811WQQ 301420 ENCODE Processing Pipeline 5a53f1733eeeb6d35b6a221312aa7940 https://www.encodeproject.org/files/ENCFF967QUY/@@download/ENCFF967QUY.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF246YDK bigBed narrowPeak conservative idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF967QUY 668563 ENCODE Processing Pipeline 8343241e19e0ba541694efa57dd67ca3 https://www.encodeproject.org/files/ENCFF246YDK/@@download/ENCFF246YDK.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF566FVB bed narrowPeak optimal idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF025EPQ, ENCFF515NYK, ENCFF811WQQ 307540 ENCODE Processing Pipeline 27f4568230f4e95c89aa289b352058cd https://www.encodeproject.org/files/ENCFF566FVB/@@download/ENCFF566FVB.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF643ERU bigBed narrowPeak optimal idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF566FVB 678283 ENCODE Processing Pipeline fdc85d93dad1fa1b42c077665f9291a6 https://www.encodeproject.org/files/ENCFF643ERU/@@download/ENCFF643ERU.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF996PYT fastq reads ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 1 50 single-ended 2181690719 Richard Myers, HAIB a7662c3b68d17a971d8d0b57ba8596ce SRA:SRR5331456 https://www.encodeproject.org/files/ENCFF996PYT/@@download/ENCFF996PYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JYK/ released antibody characterized with exemption biological replicates with identical biosample ENCFF876KCK fastq reads ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 1 50 single-ended 1691511032 Richard Myers, HAIB 641e3d924d9b3981ed59f9d39b5ac5b4 SRA:SRR5331457 https://www.encodeproject.org/files/ENCFF876KCK/@@download/ENCFF876KCK.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released antibody characterized with exemption biological replicates with identical biosample ENCFF476XCQ bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF807MUK, ENCFF876KCK 1414385602 ENCODE Processing Pipeline 4fa190cf168a839789c23d3ed15db370 https://www.encodeproject.org/files/ENCFF476XCQ/@@download/ENCFF476XCQ.bam hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF069OPS bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF807MUK, ENCFF996PYT 1779048485 ENCODE Processing Pipeline 0e765d414096a4611aee31f6e7a94152 https://www.encodeproject.org/files/ENCFF069OPS/@@download/ENCFF069OPS.bam hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF368FBI bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF476XCQ, ENCFF654EHF, ENCFF807CUF 1000013025 ENCODE Processing Pipeline f07e38fb336d2ff28b699010abe54286 https://www.encodeproject.org/files/ENCFF368FBI/@@download/ENCFF368FBI.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF654HCG bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ 1159622638 ENCODE Processing Pipeline 3c159a9817bcce8b019039cf06e00a1e https://www.encodeproject.org/files/ENCFF654HCG/@@download/ENCFF654HCG.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF030BJR bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ, ENCFF988XFX 1474384313 ENCODE Processing Pipeline db253402bf7c4397ec067e61dfd61a95 https://www.encodeproject.org/files/ENCFF030BJR/@@download/ENCFF030BJR.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF005SBK bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF476XCQ, ENCFF654EHF, ENCFF807CUF 1046598032 ENCODE Processing Pipeline 40f8c11a006da99268c8f5abe1906a90 https://www.encodeproject.org/files/ENCFF005SBK/@@download/ENCFF005SBK.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF765DQP bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ 1028414978 ENCODE Processing Pipeline f4c117b8c1707e5947147424447fba3c https://www.encodeproject.org/files/ENCFF765DQP/@@download/ENCFF765DQP.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF128ZQH bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF476XCQ, ENCFF654EHF, ENCFF807CUF 6644952 ENCODE Processing Pipeline a1b971d02033ccb6ad2b14cd75b14bf0 https://www.encodeproject.org/files/ENCFF128ZQH/@@download/ENCFF128ZQH.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF853ZNE bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF069OPS, ENCFF654EHF, ENCFF807CUF 6487660 ENCODE Processing Pipeline 1b89d3e45d2d80750516edc45ed84b43 https://www.encodeproject.org/files/ENCFF853ZNE/@@download/ENCFF853ZNE.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF315FCJ bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF069OPS, ENCFF476XCQ, ENCFF654EHF, ENCFF807CUF 7086237 ENCODE Processing Pipeline 478a2e78950f2ffcf14e592ef8988c9b https://www.encodeproject.org/files/ENCFF315FCJ/@@download/ENCFF315FCJ.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF502PFD bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ, ENCFF988XFX 1522707178 ENCODE Processing Pipeline e7a8ad0e00b4382a36e4d8002b153ab2 https://www.encodeproject.org/files/ENCFF502PFD/@@download/ENCFF502PFD.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF715XIY bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF128ZQH 13514513 ENCODE Processing Pipeline 5f7ac1389e5a5208c3841f5ed08a45a4 https://www.encodeproject.org/files/ENCFF715XIY/@@download/ENCFF715XIY.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF781QSZ bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF853ZNE 13603755 ENCODE Processing Pipeline 04cb7923340a6276482a8b34c7b3d913 https://www.encodeproject.org/files/ENCFF781QSZ/@@download/ENCFF781QSZ.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF290QTK bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF315FCJ 13500343 ENCODE Processing Pipeline fe64a6f447bec4e91920726115b5e364 https://www.encodeproject.org/files/ENCFF290QTK/@@download/ENCFF290QTK.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF214HUH bam unfiltered alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF643CGH, ENCFF876KCK 1925212075 ENCODE Processing Pipeline f1c183f76194b89e7e6907b105a77608 https://www.encodeproject.org/files/ENCFF214HUH/@@download/ENCFF214HUH.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF379HKK bam unfiltered alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF643CGH, ENCFF996PYT 2486482286 ENCODE Processing Pipeline 84decd1eeb0c1795ca8ec68cc362b8cf https://www.encodeproject.org/files/ENCFF379HKK/@@download/ENCFF379HKK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF521EJT bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF643CGH, ENCFF876KCK 1414498841 ENCODE Processing Pipeline 39452f880c15edbd04354e3c273a4507 https://www.encodeproject.org/files/ENCFF521EJT/@@download/ENCFF521EJT.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF601UUP bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF643CGH, ENCFF996PYT 1779406440 ENCODE Processing Pipeline 78c47e4cf07019190e3fd7438929d356 https://www.encodeproject.org/files/ENCFF601UUP/@@download/ENCFF601UUP.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF829GGC bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF406XEH, ENCFF521EJT, ENCFF995OIG 1234409126 ENCODE Processing Pipeline 3d1779529ea2b8dc1f4f6d39566a0d30 https://www.encodeproject.org/files/ENCFF829GGC/@@download/ENCFF829GGC.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF765YOQ bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF406XEH, ENCFF601UUP, ENCFF995OIG 1071856824 ENCODE Processing Pipeline 4ccc971a9f0eb66cbb5de991a82d2109 https://www.encodeproject.org/files/ENCFF765YOQ/@@download/ENCFF765YOQ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF521FKC bigWig signal p-value ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF406XEH, ENCFF521EJT, ENCFF601UUP, ENCFF995OIG 1248819657 ENCODE Processing Pipeline 7f9667e10797d0ba8628e04ab46b431c https://www.encodeproject.org/files/ENCFF521FKC/@@download/ENCFF521FKC.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF128CWH bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF406XEH, ENCFF521EJT, ENCFF995OIG 1052966097 ENCODE Processing Pipeline bb3c2e3467d3198d9248a608b236fd89 https://www.encodeproject.org/files/ENCFF128CWH/@@download/ENCFF128CWH.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF146NMG bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF406XEH, ENCFF601UUP, ENCFF995OIG 6222027 ENCODE Processing Pipeline 06f4066b7db987abab46b970ccd80bd5 https://www.encodeproject.org/files/ENCFF146NMG/@@download/ENCFF146NMG.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF327MYH bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF406XEH, ENCFF601UUP, ENCFF995OIG 1035979477 ENCODE Processing Pipeline c14ead30e73b4cdc32e408fc0521377f https://www.encodeproject.org/files/ENCFF327MYH/@@download/ENCFF327MYH.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF328EUU bigWig fold change over control ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF406XEH, ENCFF521EJT, ENCFF601UUP, ENCFF995OIG 1526566245 ENCODE Processing Pipeline c22f3aadd3d01d688fe474e821f7e23a https://www.encodeproject.org/files/ENCFF328EUU/@@download/ENCFF328EUU.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF782SGI bed narrowPeak optimal idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF146NMG, ENCFF419RSJ, ENCFF614BYF, ENCFF996MTB 312928 ENCODE Processing Pipeline 6a1fcad398db78418aa8d0c8f5dd714e https://www.encodeproject.org/files/ENCFF782SGI/@@download/ENCFF782SGI.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF614BYF bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF406XEH, ENCFF521EJT, ENCFF995OIG 6449027 ENCODE Processing Pipeline 31a9bb644b6309da0203f58cf0929be0 https://www.encodeproject.org/files/ENCFF614BYF/@@download/ENCFF614BYF.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF655AOY bed narrowPeak conservative idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF146NMG, ENCFF419RSJ, ENCFF614BYF, ENCFF996MTB 304018 ENCODE Processing Pipeline 02fb510596c0b501300930395e0c58e9 https://www.encodeproject.org/files/ENCFF655AOY/@@download/ENCFF655AOY.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF655QZP bigBed narrowPeak conservative idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF655AOY 674010 ENCODE Processing Pipeline a56f58349182d8b86d10fb27312b4b8e https://www.encodeproject.org/files/ENCFF655QZP/@@download/ENCFF655QZP.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF996MTB bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF406XEH, ENCFF521EJT, ENCFF601UUP, ENCFF995OIG 6975710 ENCODE Processing Pipeline a6b8a89ebb295efa56b5eab98a36e03f https://www.encodeproject.org/files/ENCFF996MTB/@@download/ENCFF996MTB.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF671PZR bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF146NMG 13599448 ENCODE Processing Pipeline a38d49b95c8a26b488a519f2187c73cd https://www.encodeproject.org/files/ENCFF671PZR/@@download/ENCFF671PZR.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF864ZLI bigBed narrowPeak optimal idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF782SGI 689016 ENCODE Processing Pipeline d573ae3a1c722250940f83e3853fdc25 https://www.encodeproject.org/files/ENCFF864ZLI/@@download/ENCFF864ZLI.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF539KBN bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF614BYF 13515340 ENCODE Processing Pipeline 419e37009b8dc0e2e46b20b6b15923f2 https://www.encodeproject.org/files/ENCFF539KBN/@@download/ENCFF539KBN.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF229XRU bigBed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF996MTB 13517014 ENCODE Processing Pipeline 762cb73cbda2e7dab1240be393b955fc https://www.encodeproject.org/files/ENCFF229XRU/@@download/ENCFF229XRU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF643PNJ bigBed narrowPeak conservative idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF966CBP 485417 ENCODE Processing Pipeline 8d83cab1d1fe404f8adedec6859e226f https://www.encodeproject.org/files/ENCFF643PNJ/@@download/ENCFF643PNJ.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF789XEL bigBed narrowPeak optimal idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF963GDB 501746 ENCODE Processing Pipeline 00c756fdc8c0dad9eaaaa4fadbbcec22 https://www.encodeproject.org/files/ENCFF789XEL/@@download/ENCFF789XEL.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF966CBP bed narrowPeak conservative idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF128ZQH, ENCFF315FCJ, ENCFF853ZNE 257969 ENCODE Processing Pipeline b7135f28fc9d60f17da8ed63b3f1c9cd https://www.encodeproject.org/files/ENCFF966CBP/@@download/ENCFF966CBP.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF963GDB bed narrowPeak optimal idr thresholded peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF128ZQH, ENCFF315FCJ, ENCFF853ZNE 270502 ENCODE Processing Pipeline a64761d8974058ef1c282dfb231db1a5 https://www.encodeproject.org/files/ENCFF963GDB/@@download/ENCFF963GDB.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF002EBZ fastq reads ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 1 36 single-ended 931170533 Michael Snyder, Stanford c480400b956d3726ce6521bf54b0cbe9 https://www.encodeproject.org/files/ENCFF002EBZ/@@download/ENCFF002EBZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF002ECE fastq reads ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 1 36 single-ended 1004839607 Michael Snyder, Stanford 2869a26330d941e6f11d79792bc21ef1 https://www.encodeproject.org/files/ENCFF002ECE/@@download/ENCFF002ECE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF053EOK bam unfiltered alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EBZ, ENCFF643CGH 1312317508 ENCODE Processing Pipeline 917a08edd075e62ec2413c53fc54547d https://www.encodeproject.org/files/ENCFF053EOK/@@download/ENCFF053EOK.bam GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF072JKI bam unfiltered alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002ECE, ENCFF643CGH 1242588427 ENCODE Processing Pipeline 822e3c81934a4336c5db4e0e7d7c5dde https://www.encodeproject.org/files/ENCFF072JKI/@@download/ENCFF072JKI.bam GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF464EBS bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EBZ, ENCFF643CGH 947584414 ENCODE Processing Pipeline f799e3afac48b8cea9a3edb717d06a57 https://www.encodeproject.org/files/ENCFF464EBS/@@download/ENCFF464EBS.bam GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF542OXT bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002ECE, ENCFF643CGH 875957092 ENCODE Processing Pipeline 5b7c31015fadaafd48e57db20870c5b4 https://www.encodeproject.org/files/ENCFF542OXT/@@download/ENCFF542OXT.bam GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF902ZSU bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EBZ, ENCFF807MUK 947791634 ENCODE Processing Pipeline 9b96d80cba0dcfe24ae39ba163feae84 https://www.encodeproject.org/files/ENCFF902ZSU/@@download/ENCFF902ZSU.bam hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF306XRP bam unfiltered alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EBZ, ENCFF807MUK 1307654103 ENCODE Processing Pipeline 0dbf6a35fadc9344d139d8423471ad80 https://www.encodeproject.org/files/ENCFF306XRP/@@download/ENCFF306XRP.bam hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF805PYC bam unfiltered alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002ECE, ENCFF807MUK 1237757675 ENCODE Processing Pipeline 7e6133ee06d333fba69d4663c320e5da https://www.encodeproject.org/files/ENCFF805PYC/@@download/ENCFF805PYC.bam hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF741WGR bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002ECE, ENCFF807MUK 876174153 ENCODE Processing Pipeline e515ee43f4b6457bbafa1139407a2de8 https://www.encodeproject.org/files/ENCFF741WGR/@@download/ENCFF741WGR.bam hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF150KGI bigWig signal p-value ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF650GFB, ENCFF741WGR 516953664 ENCODE Processing Pipeline 5368248a7139ccfc1e684f4a38e77f7a https://www.encodeproject.org/files/ENCFF150KGI/@@download/ENCFF150KGI.bigWig hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF707NDG bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF650GFB, ENCFF741WGR, ENCFF902ZSU 6368611 ENCODE Processing Pipeline 63f39119885bab329a1dd84b07820b50 https://www.encodeproject.org/files/ENCFF707NDG/@@download/ENCFF707NDG.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF506WYU bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF650GFB, ENCFF741WGR 5386237 ENCODE Processing Pipeline b9bc268f3a47505c77106f9bc18f3be4 https://www.encodeproject.org/files/ENCFF506WYU/@@download/ENCFF506WYU.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF563SNI bigBed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF506WYU 13136576 ENCODE Processing Pipeline b92867c1d90fef2cdfc1ecb098ae00a7 https://www.encodeproject.org/files/ENCFF563SNI/@@download/ENCFF563SNI.bigBed hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF651VDP bigBed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF707NDG 13347384 ENCODE Processing Pipeline 47769210288c9b08ec167789569aba12 https://www.encodeproject.org/files/ENCFF651VDP/@@download/ENCFF651VDP.bigBed hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF117KUT bigBed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF729QET 13340982 ENCODE Processing Pipeline e82ca5380ea4ac4302711c1bc6df524a https://www.encodeproject.org/files/ENCFF117KUT/@@download/ENCFF117KUT.bigBed hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF886AAF bigBed narrowPeak conservative idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF495ARE 960668 ENCODE Processing Pipeline 1961081724795b078e7008a87a629d80 https://www.encodeproject.org/files/ENCFF886AAF/@@download/ENCFF886AAF.bigBed hg19 released file validation error, low read length mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF849GMW bed narrowPeak optimal idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF506WYU, ENCFF707NDG, ENCFF729QET 532934 ENCODE Processing Pipeline 57c876e4c63e708f692efb6aef550a8e https://www.encodeproject.org/files/ENCFF849GMW/@@download/ENCFF849GMW.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF724PRL bigBed narrowPeak optimal idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF436RNR 1098161 ENCODE Processing Pipeline 2dfff41295aef22265b1b434a32cc600 https://www.encodeproject.org/files/ENCFF724PRL/@@download/ENCFF724PRL.bigBed hg19 released file validation error, low read length mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF072BBY bigWig signal p-value ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF650GFB, ENCFF902ZSU 525388862 ENCODE Processing Pipeline aaa2b85bbb0183844738640ff58c3a87 https://www.encodeproject.org/files/ENCFF072BBY/@@download/ENCFF072BBY.bigWig hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF701CLH bigWig signal p-value ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF650GFB, ENCFF741WGR, ENCFF902ZSU 597042805 ENCODE Processing Pipeline 1ba0872441568ce9703674a6a0e3593d https://www.encodeproject.org/files/ENCFF701CLH/@@download/ENCFF701CLH.bigWig hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF882WFG bigWig fold change over control ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF650GFB, ENCFF741WGR 424450548 ENCODE Processing Pipeline 16d325043efe0967bf0c543fef891a86 https://www.encodeproject.org/files/ENCFF882WFG/@@download/ENCFF882WFG.bigWig hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF468CTG bigWig fold change over control ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF650GFB, ENCFF902ZSU 461469694 ENCODE Processing Pipeline 33d0560bd519c67b3dff3b202095e131 https://www.encodeproject.org/files/ENCFF468CTG/@@download/ENCFF468CTG.bigWig hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF853WGT bigWig fold change over control ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF650GFB, ENCFF741WGR, ENCFF902ZSU 764060673 ENCODE Processing Pipeline 8cc79474b8a39c6c544a7abeb287b551 https://www.encodeproject.org/files/ENCFF853WGT/@@download/ENCFF853WGT.bigWig hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF729QET bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF650GFB, ENCFF902ZSU 5799895 ENCODE Processing Pipeline 4d47954daa1cf0a7dbd215a3809f808a https://www.encodeproject.org/files/ENCFF729QET/@@download/ENCFF729QET.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF718TAN bed narrowPeak conservative idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF506WYU, ENCFF707NDG, ENCFF729QET 449055 ENCODE Processing Pipeline c8a0c96f224988746b73bb3279cdf6fe https://www.encodeproject.org/files/ENCFF718TAN/@@download/ENCFF718TAN.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF826ODF bigWig signal p-value ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF449CRS, ENCFF464EBS 463120945 ENCODE Processing Pipeline 96ff8d63597086dbeef57d1f80199ade https://www.encodeproject.org/files/ENCFF826ODF/@@download/ENCFF826ODF.bigWig GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF652RVP bigWig signal p-value ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF449CRS, ENCFF542OXT 600539548 ENCODE Processing Pipeline 5e514ce8e9b8883b8689f3ca42959a8c https://www.encodeproject.org/files/ENCFF652RVP/@@download/ENCFF652RVP.bigWig GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF442LAH bigWig signal p-value ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF449CRS, ENCFF464EBS, ENCFF542OXT 608183982 ENCODE Processing Pipeline 95dbb3128cfa58d0f5592d4f16450161 https://www.encodeproject.org/files/ENCFF442LAH/@@download/ENCFF442LAH.bigWig GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF868OHG bigWig fold change over control ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF449CRS, ENCFF542OXT 422477703 ENCODE Processing Pipeline bd5f3de1c473d6db7fbdc920e23c0ba3 https://www.encodeproject.org/files/ENCFF868OHG/@@download/ENCFF868OHG.bigWig GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF988XCY bigWig fold change over control ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF449CRS, ENCFF464EBS 459250565 ENCODE Processing Pipeline 73163ee3024c18f315701b05983b3b8f https://www.encodeproject.org/files/ENCFF988XCY/@@download/ENCFF988XCY.bigWig GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF566XNE bigWig fold change over control ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF449CRS, ENCFF464EBS, ENCFF542OXT 762113163 ENCODE Processing Pipeline 21596b6b8e28fbe80bc79ce947776cf6 https://www.encodeproject.org/files/ENCFF566XNE/@@download/ENCFF566XNE.bigWig GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF589MTV bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF449CRS, ENCFF464EBS 5638068 ENCODE Processing Pipeline 3785cc71cceb67926d692c3f56cccbf4 https://www.encodeproject.org/files/ENCFF589MTV/@@download/ENCFF589MTV.bed.gz GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF958AXK bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF449CRS, ENCFF542OXT 5210174 ENCODE Processing Pipeline cbac4fc050f5268fc9d2ded75ef97936 https://www.encodeproject.org/files/ENCFF958AXK/@@download/ENCFF958AXK.bed.gz GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF880VAN bigBed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF958AXK 10914477 ENCODE Processing Pipeline 6a5a7d1dde3e97b12d0840af8c6da75a https://www.encodeproject.org/files/ENCFF880VAN/@@download/ENCFF880VAN.bigBed GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF983HMI bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF449CRS, ENCFF464EBS, ENCFF542OXT 6226887 ENCODE Processing Pipeline 8bff085bb2313b75ffcc46ce474bcc08 https://www.encodeproject.org/files/ENCFF983HMI/@@download/ENCFF983HMI.bed.gz GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF753JFJ bigBed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF589MTV 13286503 ENCODE Processing Pipeline 3a239f24a20489b8a6ea7feaf21465f3 https://www.encodeproject.org/files/ENCFF753JFJ/@@download/ENCFF753JFJ.bigBed GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF496HKA bigBed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF983HMI 13330426 ENCODE Processing Pipeline a7d99702ac88b083ae01e91c0d74a13e https://www.encodeproject.org/files/ENCFF496HKA/@@download/ENCFF496HKA.bigBed GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF633USB bed narrowPeak conservative idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF589MTV, ENCFF958AXK, ENCFF983HMI 449338 ENCODE Processing Pipeline 0b3773b4814867f7401cf882e3e18439 https://www.encodeproject.org/files/ENCFF633USB/@@download/ENCFF633USB.bed.gz GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF631DIC bigBed narrowPeak conservative idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF633USB 963402 ENCODE Processing Pipeline a9777276c4634e5d0b738e9000cf7329 https://www.encodeproject.org/files/ENCFF631DIC/@@download/ENCFF631DIC.bigBed GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF068MEO bed narrowPeak optimal idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF589MTV, ENCFF958AXK, ENCFF983HMI 542455 ENCODE Processing Pipeline 2c35c2a27c6fa3ca71fa07dd6e83ec9d https://www.encodeproject.org/files/ENCFF068MEO/@@download/ENCFF068MEO.bed.gz GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF279CFA bigBed narrowPeak optimal idr thresholded peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF068MEO 1115906 ENCODE Processing Pipeline 4faab4ebaa8765e71e6f349950577263 https://www.encodeproject.org/files/ENCFF279CFA/@@download/ENCFF279CFA.bigBed GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF777JFA fastq reads ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF141NUM 2242523270 Michael Snyder, Stanford 8d5328c45a3c93068cf26ea0b688fcf7 https://www.encodeproject.org/files/ENCFF777JFA/@@download/ENCFF777JFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF742JMT fastq reads ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF470MPB 6228114508 Michael Snyder, Stanford 78b5cf4012603d88cff82334854fc9c4 SRA:SRR6213108 https://www.encodeproject.org/files/ENCFF742JMT/@@download/ENCFF742JMT.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF141NUM fastq reads ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF777JFA 2307058670 Michael Snyder, Stanford 5a50af7dcc490cf9871cc257700ea44f https://www.encodeproject.org/files/ENCFF141NUM/@@download/ENCFF141NUM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF470MPB fastq reads ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF742JMT 5564614852 Michael Snyder, Stanford a87658f51c5d2e9d6dda6b65567f634d SRA:SRR6213108 https://www.encodeproject.org/files/ENCFF470MPB/@@download/ENCFF470MPB.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF115IJR bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF141NUM, ENCFF777JFA, ENCFF807MUK 4118616800 ENCODE Processing Pipeline b01bd434e24ad2f0e780750fbba299cd https://www.encodeproject.org/files/ENCFF115IJR/@@download/ENCFF115IJR.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF719JNQ bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 100 ENCFF470MPB, ENCFF742JMT, ENCFF807MUK 7648065426 ENCODE Processing Pipeline 1d5bc3a6b8b7af93e02676aa5b54e3c7 https://www.encodeproject.org/files/ENCFF719JNQ/@@download/ENCFF719JNQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF446JLZ fastq reads ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF411FCT 3885263651 Michael Snyder, Stanford e1149dc6b54e8b078f6fc9f7df176ada SRA:SRR6213107 https://www.encodeproject.org/files/ENCFF446JLZ/@@download/ENCFF446JLZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF411FCT fastq reads ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF446JLZ 4510894710 Michael Snyder, Stanford 5e671b45e6680dd13783112b86665895 SRA:SRR6213107 https://www.encodeproject.org/files/ENCFF411FCT/@@download/ENCFF411FCT.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF700UIV bam unfiltered alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF411FCT, ENCFF446JLZ, ENCFF643CGH 7710576948 ENCODE Processing Pipeline 5a45fbf0f2c16f5ed898a509f4f6523a https://www.encodeproject.org/files/ENCFF700UIV/@@download/ENCFF700UIV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF215XET bam unfiltered alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 100 ENCFF470MPB, ENCFF643CGH, ENCFF742JMT 10445631188 ENCODE Processing Pipeline ba55922fed8605ef182d4d6da0d123d5 https://www.encodeproject.org/files/ENCFF215XET/@@download/ENCFF215XET.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF779IQL bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF411FCT, ENCFF446JLZ, ENCFF643CGH 5647704314 ENCODE Processing Pipeline 18bd57301631aed1d28957980a5ce389 https://www.encodeproject.org/files/ENCFF779IQL/@@download/ENCFF779IQL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF257OOQ bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 100 ENCFF470MPB, ENCFF643CGH, ENCFF742JMT 7653691891 ENCODE Processing Pipeline a82e2cdcf3bf82fc2d70a0f1c966f14d https://www.encodeproject.org/files/ENCFF257OOQ/@@download/ENCFF257OOQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF804PQQ bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF712WXB, ENCFF779IQL, ENCFF790TAN 1958899672 ENCODE Processing Pipeline 2ecc813f7a0de60b2848298d30339ba9 https://www.encodeproject.org/files/ENCFF804PQQ/@@download/ENCFF804PQQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF055TWA bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF257OOQ, ENCFF712WXB 1531093249 ENCODE Processing Pipeline b6b35b4f8e3af7e03c944fa0a2fb9f6c https://www.encodeproject.org/files/ENCFF055TWA/@@download/ENCFF055TWA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF865NQN bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF257OOQ, ENCFF712WXB, ENCFF779IQL, ENCFF790TAN 2365664177 ENCODE Processing Pipeline e52556a7bd3883f4db84a6c2c666a2db https://www.encodeproject.org/files/ENCFF865NQN/@@download/ENCFF865NQN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF243PYG bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF712WXB, ENCFF779IQL, ENCFF790TAN 2011278628 ENCODE Processing Pipeline ad53ff636245fa4a76cff63f8ec25f7a https://www.encodeproject.org/files/ENCFF243PYG/@@download/ENCFF243PYG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF450XZC bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF257OOQ, ENCFF712WXB 2045803340 ENCODE Processing Pipeline 5a3de590e51d8ab4df8e4525e6de5525 https://www.encodeproject.org/files/ENCFF450XZC/@@download/ENCFF450XZC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF336ZFU bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF257OOQ, ENCFF712WXB, ENCFF779IQL, ENCFF790TAN 4064375361 ENCODE Processing Pipeline b36cf072de4d0e166341d42842831c93 https://www.encodeproject.org/files/ENCFF336ZFU/@@download/ENCFF336ZFU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF845XVK bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF257OOQ, ENCFF712WXB, ENCFF779IQL, ENCFF790TAN 7376735 ENCODE Processing Pipeline 1d26ebf3c1f9e99501878d213800902e https://www.encodeproject.org/files/ENCFF845XVK/@@download/ENCFF845XVK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF958TGL bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF257OOQ, ENCFF712WXB 7323182 ENCODE Processing Pipeline 23970b7cb7ad48e4cf709d42492a44b7 https://www.encodeproject.org/files/ENCFF958TGL/@@download/ENCFF958TGL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF269JKK bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF712WXB, ENCFF779IQL, ENCFF790TAN 7262523 ENCODE Processing Pipeline e332104f07fa650f7a4071ecb253f7ec https://www.encodeproject.org/files/ENCFF269JKK/@@download/ENCFF269JKK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF630KHM bigBed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF269JKK 12940959 ENCODE Processing Pipeline cee155264ae468ca9b7433f900d5436e https://www.encodeproject.org/files/ENCFF630KHM/@@download/ENCFF630KHM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF869UBF bigBed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF958TGL 12803549 ENCODE Processing Pipeline 54cc4f621b76255fad5523f198a5a115 https://www.encodeproject.org/files/ENCFF869UBF/@@download/ENCFF869UBF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF556WVT bigBed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF845XVK 12832098 ENCODE Processing Pipeline 14b7fec708fadcf4fa4e23a80eacb230 https://www.encodeproject.org/files/ENCFF556WVT/@@download/ENCFF556WVT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF389LKZ bed narrowPeak conservative idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF269JKK, ENCFF419RSJ, ENCFF845XVK, ENCFF958TGL 72508 ENCODE Processing Pipeline 2a8f74f2a62d28f9df97c65648d86c32 https://www.encodeproject.org/files/ENCFF389LKZ/@@download/ENCFF389LKZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF462AZY bed narrowPeak optimal idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF269JKK, ENCFF419RSJ, ENCFF845XVK, ENCFF958TGL 733892 ENCODE Processing Pipeline 5a66428f408e8eb4593f0ec2663cebff https://www.encodeproject.org/files/ENCFF462AZY/@@download/ENCFF462AZY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF239KJX bigBed narrowPeak conservative idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF389LKZ 204189 ENCODE Processing Pipeline 212fd7f5d28478f8153bef40b4dcb473 https://www.encodeproject.org/files/ENCFF239KJX/@@download/ENCFF239KJX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF173PIB bigBed narrowPeak optimal idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF462AZY 1600943 ENCODE Processing Pipeline f76d7e72109297e21d6afec972d14d55 https://www.encodeproject.org/files/ENCFF173PIB/@@download/ENCFF173PIB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF136BWS bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF115IJR, ENCFF581ZJL, ENCFF719JNQ, ENCFF834TUP 2416422437 ENCODE Processing Pipeline 5fa45cef0eb199e5215eea66b9a0322a https://www.encodeproject.org/files/ENCFF136BWS/@@download/ENCFF136BWS.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF458MAY bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF115IJR, ENCFF581ZJL, ENCFF719JNQ, ENCFF834TUP 2647721818 ENCODE Processing Pipeline 189bf930ab83f3ab90559ec3242c0333 https://www.encodeproject.org/files/ENCFF458MAY/@@download/ENCFF458MAY.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF699AFV bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF115IJR, ENCFF581ZJL 6920391 ENCODE Processing Pipeline 3734147554a35fa56a7b48010c1acc1c https://www.encodeproject.org/files/ENCFF699AFV/@@download/ENCFF699AFV.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF825OFB bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF115IJR, ENCFF581ZJL, ENCFF719JNQ, ENCFF834TUP 7320849 ENCODE Processing Pipeline e93a9deadf9e512d2fc0472f2464bca1 https://www.encodeproject.org/files/ENCFF825OFB/@@download/ENCFF825OFB.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF902DIA bam unfiltered alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF411FCT, ENCFF446JLZ, ENCFF807MUK 7705289488 ENCODE Processing Pipeline 872713338bab41207511318af3af9d35 https://www.encodeproject.org/files/ENCFF902DIA/@@download/ENCFF902DIA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF521MJN bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF411FCT, ENCFF446JLZ, ENCFF807MUK 5643757224 ENCODE Processing Pipeline 5247f36fa90ea7374503cb8dd706b2a1 https://www.encodeproject.org/files/ENCFF521MJN/@@download/ENCFF521MJN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF457GMM bam unfiltered alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 100 ENCFF470MPB, ENCFF742JMT, ENCFF807MUK 10441850792 ENCODE Processing Pipeline f264c4d1aedb089de2f04afa035224de https://www.encodeproject.org/files/ENCFF457GMM/@@download/ENCFF457GMM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF514TGB bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF521MJN, ENCFF834TUP 1929878767 ENCODE Processing Pipeline ca3bc69d4689c5ec6331b0590bc4cc53 https://www.encodeproject.org/files/ENCFF514TGB/@@download/ENCFF514TGB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF491QZV bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF719JNQ, ENCFF834TUP 1525725909 ENCODE Processing Pipeline d75e5f2b8833463b441edafa3eb1134b https://www.encodeproject.org/files/ENCFF491QZV/@@download/ENCFF491QZV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF747MEU bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF521MJN, ENCFF834TUP 2049521319 ENCODE Processing Pipeline 34f704825cc14ee824db1e4851907271 https://www.encodeproject.org/files/ENCFF747MEU/@@download/ENCFF747MEU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF321RTR bed narrowPeak conservative idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF059LBQ, ENCFF134OWN, ENCFF789DUE 73953 ENCODE Processing Pipeline dc65968bffa8e7abe16da8ab14e999d1 https://www.encodeproject.org/files/ENCFF321RTR/@@download/ENCFF321RTR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF995JZT bigWig signal p-value ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF521MJN, ENCFF719JNQ, ENCFF834TUP 2369730131 ENCODE Processing Pipeline 1284bcb645fde79271ee478b830e1e9c https://www.encodeproject.org/files/ENCFF995JZT/@@download/ENCFF995JZT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF848JRD bigBed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF059LBQ 12922926 ENCODE Processing Pipeline 39e8a5f6d792e595d30e7d988233ca98 https://www.encodeproject.org/files/ENCFF848JRD/@@download/ENCFF848JRD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF856VDO bigBed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF789DUE 12804933 ENCODE Processing Pipeline 77b1df659ebe71f543856b428911a5c0 https://www.encodeproject.org/files/ENCFF856VDO/@@download/ENCFF856VDO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF728YHT bigBed narrowPeak optimal idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF644WLI 1607170 ENCODE Processing Pipeline ff60925433a03c2d4c1214fffc0062d5 https://www.encodeproject.org/files/ENCFF728YHT/@@download/ENCFF728YHT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF320VKN bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF521MJN, ENCFF719JNQ, ENCFF834TUP 4069269344 ENCODE Processing Pipeline d1e6e2e0e01f54a4bcbae70984485628 https://www.encodeproject.org/files/ENCFF320VKN/@@download/ENCFF320VKN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF134OWN bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF521MJN, ENCFF719JNQ, ENCFF834TUP 7369817 ENCODE Processing Pipeline a6b3812bc035338f05a99e996dc4b4c6 https://www.encodeproject.org/files/ENCFF134OWN/@@download/ENCFF134OWN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF644WLI bed narrowPeak optimal idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF059LBQ, ENCFF134OWN, ENCFF789DUE 740515 ENCODE Processing Pipeline 4a0a8623e3cb7340dd9ced9610ab18e2 https://www.encodeproject.org/files/ENCFF644WLI/@@download/ENCFF644WLI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF804FSV bigWig fold change over control ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF719JNQ, ENCFF834TUP 2035784806 ENCODE Processing Pipeline f57c6a5e1e1c1b4237a26fb64a1279e2 https://www.encodeproject.org/files/ENCFF804FSV/@@download/ENCFF804FSV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF059LBQ bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF521MJN, ENCFF834TUP 7254816 ENCODE Processing Pipeline 308d63dee50ea770d3a9870c122a6492 https://www.encodeproject.org/files/ENCFF059LBQ/@@download/ENCFF059LBQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF789DUE bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF719JNQ, ENCFF834TUP 7334096 ENCODE Processing Pipeline dc8ca93624ffa5580dd9bdb280637134 https://www.encodeproject.org/files/ENCFF789DUE/@@download/ENCFF789DUE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF512CYZ bigBed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF134OWN 12818817 ENCODE Processing Pipeline 4abc5eca92e2015495a84389fb15203f https://www.encodeproject.org/files/ENCFF512CYZ/@@download/ENCFF512CYZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF227XXB bigBed narrowPeak conservative idr thresholded peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF321RTR 206242 ENCODE Processing Pipeline 4a4af62a0d33ce75d7cc87704560723f https://www.encodeproject.org/files/ENCFF227XXB/@@download/ENCFF227XXB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF097ONL bam unfiltered alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF664SNF, ENCFF807MUK 1820621157 ENCODE Processing Pipeline 550c7da12d60f20036554533b3979486 https://www.encodeproject.org/files/ENCFF097ONL/@@download/ENCFF097ONL.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF065WXN bam unfiltered alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF745TQE, ENCFF807MUK 1649108160 ENCODE Processing Pipeline 73aeb782c1fbf170815693d300fd50cc https://www.encodeproject.org/files/ENCFF065WXN/@@download/ENCFF065WXN.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF802ETH bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF745TQE, ENCFF807MUK 1260026599 ENCODE Processing Pipeline b3e40f7c26f18d39bb2cf1fb002d720e https://www.encodeproject.org/files/ENCFF802ETH/@@download/ENCFF802ETH.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF849EIR bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF664SNF, ENCFF807MUK 1398150042 ENCODE Processing Pipeline 33e9ec424aa4c7af03be262fea8083d6 https://www.encodeproject.org/files/ENCFF849EIR/@@download/ENCFF849EIR.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF813MDZ bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF849EIR, ENCFF991UTU 1089536064 ENCODE Processing Pipeline f3b25069f0e164df8519bff06e100aa6 https://www.encodeproject.org/files/ENCFF813MDZ/@@download/ENCFF813MDZ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF552CTI bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF849EIR, ENCFF991UTU 878260879 ENCODE Processing Pipeline 1ce90c8eb73dc2a5d1cfb841267daa48 https://www.encodeproject.org/files/ENCFF552CTI/@@download/ENCFF552CTI.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF040UZK bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF802ETH, ENCFF849EIR, ENCFF991UTU 1392714753 ENCODE Processing Pipeline c5e6242b9a82ec9f08f8fbcdf77e10be https://www.encodeproject.org/files/ENCFF040UZK/@@download/ENCFF040UZK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF025GWN bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF802ETH, ENCFF849EIR, ENCFF991UTU 1373082898 ENCODE Processing Pipeline 79790f0add1499c2fdc573a2801d7ca5 https://www.encodeproject.org/files/ENCFF025GWN/@@download/ENCFF025GWN.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF651MBI bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF849EIR, ENCFF991UTU 5909377 ENCODE Processing Pipeline 4b5a5979d48d2b31a60bfbc5e31b029f https://www.encodeproject.org/files/ENCFF651MBI/@@download/ENCFF651MBI.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF003GWJ bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF802ETH, ENCFF991UTU 5637380 ENCODE Processing Pipeline 3c61c90619cf338818f7c6c1ae745df7 https://www.encodeproject.org/files/ENCFF003GWJ/@@download/ENCFF003GWJ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF129GGF bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF802ETH, ENCFF849EIR, ENCFF991UTU 6804455 ENCODE Processing Pipeline 4aa962a37e1b0133915934353bb0f529 https://www.encodeproject.org/files/ENCFF129GGF/@@download/ENCFF129GGF.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF212MOD bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF651MBI 11514246 ENCODE Processing Pipeline 9f5e36d3efd0b8f783928f63967cbc86 https://www.encodeproject.org/files/ENCFF212MOD/@@download/ENCFF212MOD.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF984UXL bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF003GWJ 13601436 ENCODE Processing Pipeline 8205fc211165a670b26dfa87aa5e12f3 https://www.encodeproject.org/files/ENCFF984UXL/@@download/ENCFF984UXL.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF209QCM bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF129GGF 13747081 ENCODE Processing Pipeline 1e2d21a7077c12deee4246755ac3c93c https://www.encodeproject.org/files/ENCFF209QCM/@@download/ENCFF209QCM.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF404QPJ bigBed narrowPeak conservative idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF189LVJ 823974 ENCODE Processing Pipeline 3b14340feb9d25cf73c7159b78803038 https://www.encodeproject.org/files/ENCFF404QPJ/@@download/ENCFF404QPJ.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF189LVJ bed narrowPeak conservative idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF003GWJ, ENCFF129GGF, ENCFF651MBI 381270 ENCODE Processing Pipeline 9951b5765e6b72af206ddd7a74d7f234 https://www.encodeproject.org/files/ENCFF189LVJ/@@download/ENCFF189LVJ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF971QHN bed narrowPeak optimal idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF003GWJ, ENCFF129GGF, ENCFF651MBI 384070 ENCODE Processing Pipeline b2dc6635b5a638f683ecc6f1d4144373 https://www.encodeproject.org/files/ENCFF971QHN/@@download/ENCFF971QHN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF344YSD bigBed narrowPeak optimal idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF971QHN 830015 ENCODE Processing Pipeline a9930b58086a476a354a54b367a3dac5 https://www.encodeproject.org/files/ENCFF344YSD/@@download/ENCFF344YSD.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF664SNF fastq reads ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1616448344 Richard Myers, HAIB 18d755c10b36ab8fb3c02166a51b2104 SRA:SRR6213050 https://www.encodeproject.org/files/ENCFF664SNF/@@download/ENCFF664SNF.fastq.gz Illumina HiSeq 2000 /files/ENCFF158AFC/ released antibody characterized with exemption biological replicates with identical biosample ENCFF745TQE fastq reads ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1466816356 Richard Myers, HAIB 0055ad4c0b4a9e35d827f8b2b144b49e SRA:SRR6213049 https://www.encodeproject.org/files/ENCFF745TQE/@@download/ENCFF745TQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released antibody characterized with exemption biological replicates with identical biosample ENCFF884TWU bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF664SNF, ENCFF807MUK 1398150013 ENCODE Processing Pipeline 0eff274c72fd2409f26303181d78e435 https://www.encodeproject.org/files/ENCFF884TWU/@@download/ENCFF884TWU.bam hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF640TLM bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF745TQE, ENCFF807MUK 1260026570 ENCODE Processing Pipeline 681f01dc38a7464e572a6063e1e12650 https://www.encodeproject.org/files/ENCFF640TLM/@@download/ENCFF640TLM.bam hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF778GHG bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF802ETH, ENCFF991UTU 687647397 ENCODE Processing Pipeline 6cae913d19757edd4d840b36100db5d6 https://www.encodeproject.org/files/ENCFF778GHG/@@download/ENCFF778GHG.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF009TZJ bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF884TWU, ENCFF991UTU 1094273026 ENCODE Processing Pipeline 7146a977390167fe7e6edea864976b77 https://www.encodeproject.org/files/ENCFF009TZJ/@@download/ENCFF009TZJ.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF266GZH bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF640TLM, ENCFF884TWU, ENCFF991UTU 1390404599 ENCODE Processing Pipeline 0c7baca611a66b534c4906b6eee984c1 https://www.encodeproject.org/files/ENCFF266GZH/@@download/ENCFF266GZH.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF622JDG bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF884TWU, ENCFF991UTU 890286836 ENCODE Processing Pipeline 7f7b206ae4dbfabdc91f521462e53005 https://www.encodeproject.org/files/ENCFF622JDG/@@download/ENCFF622JDG.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF496UHH bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF802ETH, ENCFF991UTU 656046964 ENCODE Processing Pipeline 8889c8430fd2cc4efa252fcdc1f71813 https://www.encodeproject.org/files/ENCFF496UHH/@@download/ENCFF496UHH.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF499ABH bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF640TLM, ENCFF884TWU, ENCFF991UTU 1371473595 ENCODE Processing Pipeline d3b6e95549ad8725710825514b1d9df2 https://www.encodeproject.org/files/ENCFF499ABH/@@download/ENCFF499ABH.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF962XMJ bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF955CAT 13628819 ENCODE Processing Pipeline bfb67737e20fec1ad828860c46fdce4b https://www.encodeproject.org/files/ENCFF962XMJ/@@download/ENCFF962XMJ.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF955CAT bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF640TLM, ENCFF991UTU 5885283 ENCODE Processing Pipeline f9b49f59d2a5715f533d621c7174e080 https://www.encodeproject.org/files/ENCFF955CAT/@@download/ENCFF955CAT.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF741KXN bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF640TLM, ENCFF884TWU, ENCFF991UTU 6990554 ENCODE Processing Pipeline 5ab0e6411557f7726148cfcc45984f7b https://www.encodeproject.org/files/ENCFF741KXN/@@download/ENCFF741KXN.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF765FDF bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF884TWU, ENCFF991UTU 6065050 ENCODE Processing Pipeline cea37fc6afa26cbcab480905cdd8deec https://www.encodeproject.org/files/ENCFF765FDF/@@download/ENCFF765FDF.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF561MIX bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF765FDF 11527816 ENCODE Processing Pipeline 430f9096788888393451b9a379903186 https://www.encodeproject.org/files/ENCFF561MIX/@@download/ENCFF561MIX.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF468CNW bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF741KXN 13749797 ENCODE Processing Pipeline 734772640c9b77f411829d202c4a8a6c https://www.encodeproject.org/files/ENCFF468CNW/@@download/ENCFF468CNW.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF688KRR bam unfiltered alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF745TQE 1658503012 ENCODE Processing Pipeline 484fc71dae7adc7b2a06c985e43214f2 https://www.encodeproject.org/files/ENCFF688KRR/@@download/ENCFF688KRR.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF922CEN bam unfiltered alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF664SNF 1830495463 ENCODE Processing Pipeline d14795b5335ad05a9fe687d85e2e5c36 https://www.encodeproject.org/files/ENCFF922CEN/@@download/ENCFF922CEN.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF232XTK bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF745TQE 1260248597 ENCODE Processing Pipeline 2ec9fb0a318518af3a8b5575169123b5 https://www.encodeproject.org/files/ENCFF232XTK/@@download/ENCFF232XTK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF879HPF bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF664SNF 1398449574 ENCODE Processing Pipeline ab75d11a6d15b3cc450f3bc1fb58eb01 https://www.encodeproject.org/files/ENCFF879HPF/@@download/ENCFF879HPF.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF775EWF bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF232XTK, ENCFF370PSF 682689154 ENCODE Processing Pipeline c95b1b4f7cd8156ad5b5a897c78477be https://www.encodeproject.org/files/ENCFF775EWF/@@download/ENCFF775EWF.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF489QJM bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF879HPF, ENCFF985NSN 978826013 ENCODE Processing Pipeline 8e52af5c0fb69c1c6724217c2ce37b01 https://www.encodeproject.org/files/ENCFF489QJM/@@download/ENCFF489QJM.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF748PDZ bigWig signal p-value ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF232XTK, ENCFF370PSF, ENCFF879HPF, ENCFF985NSN 1417067981 ENCODE Processing Pipeline 4e59a6f4f1a82908d7a29916f4af9a54 https://www.encodeproject.org/files/ENCFF748PDZ/@@download/ENCFF748PDZ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF977GRQ bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF232XTK, ENCFF370PSF 658539194 ENCODE Processing Pipeline fc42e6562cd260bf67c2affab14467ac https://www.encodeproject.org/files/ENCFF977GRQ/@@download/ENCFF977GRQ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF442IIA bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF879HPF, ENCFF985NSN 878253345 ENCODE Processing Pipeline 3b83ebb92073128edc1690170513a2b6 https://www.encodeproject.org/files/ENCFF442IIA/@@download/ENCFF442IIA.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF794EAC bigWig fold change over control ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF232XTK, ENCFF370PSF, ENCFF879HPF, ENCFF985NSN 1392756481 ENCODE Processing Pipeline ea7f4684191eddf0fc3d534fdfdc8b42 https://www.encodeproject.org/files/ENCFF794EAC/@@download/ENCFF794EAC.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF498RYU bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF512ZCE 11527570 ENCODE Processing Pipeline dd235f5e1355e1642a21b338c0db9cbd https://www.encodeproject.org/files/ENCFF498RYU/@@download/ENCFF498RYU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF512ZCE bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF879HPF, ENCFF985NSN 5830937 ENCODE Processing Pipeline 0b23384631fb347e209a621edc6ed6c6 https://www.encodeproject.org/files/ENCFF512ZCE/@@download/ENCFF512ZCE.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF593OTD bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF232XTK, ENCFF370PSF 5612433 ENCODE Processing Pipeline 70cac51e074c076bdd2bab7e0fc5b16b https://www.encodeproject.org/files/ENCFF593OTD/@@download/ENCFF593OTD.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF173XPM bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF232XTK, ENCFF370PSF, ENCFF879HPF, ENCFF985NSN 6801061 ENCODE Processing Pipeline 5192cff46e49b69fc961bca21976bd56 https://www.encodeproject.org/files/ENCFF173XPM/@@download/ENCFF173XPM.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF934OBZ bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF593OTD 13577386 ENCODE Processing Pipeline 522f7e1e78a1cb72406def2a2c153ef6 https://www.encodeproject.org/files/ENCFF934OBZ/@@download/ENCFF934OBZ.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF003LQV bigBed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF173XPM 13766237 ENCODE Processing Pipeline d62af6a0f86f960920561394dbb7b9c4 https://www.encodeproject.org/files/ENCFF003LQV/@@download/ENCFF003LQV.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF919RRZ bigBed narrowPeak conservative idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF185IMR 825749 ENCODE Processing Pipeline 92d943d1c449e233833e1849714a881a https://www.encodeproject.org/files/ENCFF919RRZ/@@download/ENCFF919RRZ.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF497MUF bed narrowPeak optimal idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF173XPM, ENCFF419RSJ, ENCFF512ZCE, ENCFF593OTD 391277 ENCODE Processing Pipeline caa63c49a43c3dcf6762dcbea15dd46d https://www.encodeproject.org/files/ENCFF497MUF/@@download/ENCFF497MUF.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF185IMR bed narrowPeak conservative idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF173XPM, ENCFF419RSJ, ENCFF512ZCE, ENCFF593OTD 381393 ENCODE Processing Pipeline 026bcb6c662b47e9cbd7abb6b35ae4b8 https://www.encodeproject.org/files/ENCFF185IMR/@@download/ENCFF185IMR.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF293UCA bigBed narrowPeak optimal idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF497MUF 844128 ENCODE Processing Pipeline fb770b8c87dee713be8351be7bb849ea https://www.encodeproject.org/files/ENCFF293UCA/@@download/ENCFF293UCA.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF073RTE bigBed narrowPeak conservative idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF029BXB 589066 ENCODE Processing Pipeline 0abacc93dc1a66989155c068c5828f12 https://www.encodeproject.org/files/ENCFF073RTE/@@download/ENCFF073RTE.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF862NGG bed narrowPeak optimal idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF741KXN, ENCFF765FDF, ENCFF955CAT 332417 ENCODE Processing Pipeline d7918ac7abf430b1367f587b576211a2 https://www.encodeproject.org/files/ENCFF862NGG/@@download/ENCFF862NGG.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF029BXB bed narrowPeak conservative idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF741KXN, ENCFF765FDF, ENCFF955CAT 322213 ENCODE Processing Pipeline 396c75069622dc5923a29337258109d8 https://www.encodeproject.org/files/ENCFF029BXB/@@download/ENCFF029BXB.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF651DRR bigBed narrowPeak optimal idr thresholded peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF862NGG 602316 ENCODE Processing Pipeline 50065e2f1eb4449e5abecc83d0b02eab https://www.encodeproject.org/files/ENCFF651DRR/@@download/ENCFF651DRR.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF457HUL fastq reads ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1346331043 Richard Myers, HAIB 0e228a9a107908f59f3f12b7405f55a0 SRA:SRR5338729 https://www.encodeproject.org/files/ENCFF457HUL/@@download/ENCFF457HUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF249BHU fastq reads ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1248237524 Richard Myers, HAIB f3913832208c86ce3551cf81931fb46d SRA:SRR5338730 https://www.encodeproject.org/files/ENCFF249BHU/@@download/ENCFF249BHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF158AFC/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF097OZJ bam unfiltered alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF457HUL, ENCFF643CGH 1517527789 ENCODE Processing Pipeline 763f6a9918a32f4fc37d3cc1d973ce4d https://www.encodeproject.org/files/ENCFF097OZJ/@@download/ENCFF097OZJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF455DUC bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF249BHU, ENCFF643CGH 795016172 ENCODE Processing Pipeline 797181d01929bd92ce104c5ae2620101 https://www.encodeproject.org/files/ENCFF455DUC/@@download/ENCFF455DUC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF272WZR bam unfiltered alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF249BHU, ENCFF643CGH 1327490856 ENCODE Processing Pipeline 1d94941abd492de2f81e220ff3999dbc https://www.encodeproject.org/files/ENCFF272WZR/@@download/ENCFF272WZR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF953HVZ bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF457HUL, ENCFF643CGH 1155850085 ENCODE Processing Pipeline 25f0a2236f86d7d53eb71a9088565dba https://www.encodeproject.org/files/ENCFF953HVZ/@@download/ENCFF953HVZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF402NBW bigWig signal p-value ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF953HVZ 743704152 ENCODE Processing Pipeline 6100f63d903b84bc43394e37b8ca8e37 https://www.encodeproject.org/files/ENCFF402NBW/@@download/ENCFF402NBW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF351CUZ bigWig signal p-value ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF455DUC, ENCFF985NSN 524886276 ENCODE Processing Pipeline 0dcb685a8c4353b34d522960a8509ce1 https://www.encodeproject.org/files/ENCFF351CUZ/@@download/ENCFF351CUZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF924KSU bigWig fold change over control ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF455DUC, ENCFF985NSN 458331774 ENCODE Processing Pipeline ecd7afa3a2f3fba6f6a20d517aff2bc9 https://www.encodeproject.org/files/ENCFF924KSU/@@download/ENCFF924KSU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF362XGP bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF455DUC, ENCFF953HVZ, ENCFF985NSN 6522914 ENCODE Processing Pipeline 160243bb54f1e3186989e6a30797194b https://www.encodeproject.org/files/ENCFF362XGP/@@download/ENCFF362XGP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF981WKM bigBed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF415VAZ 13286753 ENCODE Processing Pipeline c86fe71f2abeb829877e948f398cc229 https://www.encodeproject.org/files/ENCFF981WKM/@@download/ENCFF981WKM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF761GCA bigWig signal p-value ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF455DUC, ENCFF953HVZ, ENCFF985NSN 1114557634 ENCODE Processing Pipeline 3399d854415379aeda4281aa74aa1578 https://www.encodeproject.org/files/ENCFF761GCA/@@download/ENCFF761GCA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF646CBO bigWig fold change over control ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF953HVZ 628353481 ENCODE Processing Pipeline a739d2be30a4fe7c3d0428aaa6802deb https://www.encodeproject.org/files/ENCFF646CBO/@@download/ENCFF646CBO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF954BOA bigWig fold change over control ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF455DUC, ENCFF953HVZ, ENCFF985NSN 1133841436 ENCODE Processing Pipeline 145766207d8df2ed99128d699773f127 https://www.encodeproject.org/files/ENCFF954BOA/@@download/ENCFF954BOA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF415VAZ bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF455DUC, ENCFF985NSN 5124980 ENCODE Processing Pipeline 384123bebd58591533f9072b43fc395a https://www.encodeproject.org/files/ENCFF415VAZ/@@download/ENCFF415VAZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF614GUV bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF953HVZ 5488825 ENCODE Processing Pipeline 9cac14957b9c827be6ad6ae7a746660e https://www.encodeproject.org/files/ENCFF614GUV/@@download/ENCFF614GUV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF887TZG bigBed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF362XGP 13583309 ENCODE Processing Pipeline 9341e7ab46f9689031afc14217609426 https://www.encodeproject.org/files/ENCFF887TZG/@@download/ENCFF887TZG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF162LWQ bigBed narrowPeak optimal idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF951VPZ 628082 ENCODE Processing Pipeline 1f83ffafa44a7a609e79408f5977f7b6 https://www.encodeproject.org/files/ENCFF162LWQ/@@download/ENCFF162LWQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF834YZA bigBed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF614GUV 11369230 ENCODE Processing Pipeline f6f2d0bd0e15ed74536352d40fb5c186 https://www.encodeproject.org/files/ENCFF834YZA/@@download/ENCFF834YZA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF823LVL bed narrowPeak conservative idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF362XGP, ENCFF415VAZ, ENCFF419RSJ, ENCFF614GUV 243081 ENCODE Processing Pipeline 678e818496568b28f934672f62793095 https://www.encodeproject.org/files/ENCFF823LVL/@@download/ENCFF823LVL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF951VPZ bed narrowPeak optimal idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF362XGP, ENCFF415VAZ, ENCFF419RSJ, ENCFF614GUV 337429 ENCODE Processing Pipeline ddb80b0e8596d0ecb3d6aca81627e02b https://www.encodeproject.org/files/ENCFF951VPZ/@@download/ENCFF951VPZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF902SPB bigBed narrowPeak conservative idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF823LVL 496341 ENCODE Processing Pipeline fcea366537693625bd7220bf97f251e7 https://www.encodeproject.org/files/ENCFF902SPB/@@download/ENCFF902SPB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF293WLB bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF249BHU, ENCFF807MUK 795112595 ENCODE Processing Pipeline f0c2d60236bbeebf4b121de7a0ef22a9 https://www.encodeproject.org/files/ENCFF293WLB/@@download/ENCFF293WLB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF061HRD bam unfiltered alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF249BHU, ENCFF807MUK 1322117526 ENCODE Processing Pipeline 50f18af3080906488f33046914e9bd02 https://www.encodeproject.org/files/ENCFF061HRD/@@download/ENCFF061HRD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF800SIC bam unfiltered alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF457HUL, ENCFF807MUK 1509059088 ENCODE Processing Pipeline 26e923db77cfd3f707af423ff48fc469 https://www.encodeproject.org/files/ENCFF800SIC/@@download/ENCFF800SIC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF811PZE bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF457HUL, ENCFF807MUK 1155624680 ENCODE Processing Pipeline 06aa4dda70009b6b4efcbf492724b5d3 https://www.encodeproject.org/files/ENCFF811PZE/@@download/ENCFF811PZE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF972ILN bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF293WLB, ENCFF359TIO 5187445 ENCODE Processing Pipeline 57a4c44881b7a7f7237879868d6fcf42 https://www.encodeproject.org/files/ENCFF972ILN/@@download/ENCFF972ILN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF107UWE bigBed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF971SJB 13581261 ENCODE Processing Pipeline 98a49d88f6b008d9b8a8e47d58fa0aa2 https://www.encodeproject.org/files/ENCFF107UWE/@@download/ENCFF107UWE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF584JHM bed narrowPeak conservative idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF363RKC, ENCFF971SJB, ENCFF972ILN 241250 ENCODE Processing Pipeline a7bd3a361a63bf5cce1902e30ebbd5cc https://www.encodeproject.org/files/ENCFF584JHM/@@download/ENCFF584JHM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF126PNX bed narrowPeak optimal idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF363RKC, ENCFF971SJB, ENCFF972ILN 336869 ENCODE Processing Pipeline 6d717898050610295a501877bd125954 https://www.encodeproject.org/files/ENCFF126PNX/@@download/ENCFF126PNX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF279NUK bigWig signal p-value ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF811PZE, ENCFF991UTU 748513159 ENCODE Processing Pipeline 699d9812310becc8d8dba73c9709d292 https://www.encodeproject.org/files/ENCFF279NUK/@@download/ENCFF279NUK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF736CDW bigWig fold change over control ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF293WLB, ENCFF359TIO 457361807 ENCODE Processing Pipeline 6501363afa891e6fc4edf4daff5056ef https://www.encodeproject.org/files/ENCFF736CDW/@@download/ENCFF736CDW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF971SJB bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF811PZE, ENCFF991UTU 5575230 ENCODE Processing Pipeline dfe5f474cdaa145a30751de61781cda3 https://www.encodeproject.org/files/ENCFF971SJB/@@download/ENCFF971SJB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF267EQX bigBed narrowPeak conservative idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF584JHM 493466 ENCODE Processing Pipeline c76267c220f8c38ee31adbe156006365 https://www.encodeproject.org/files/ENCFF267EQX/@@download/ENCFF267EQX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF934VUD bigBed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF363RKC 13570252 ENCODE Processing Pipeline fc173dbc06c1aab468c14a7ba5eb0594 https://www.encodeproject.org/files/ENCFF934VUD/@@download/ENCFF934VUD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF249WXY bigWig signal p-value ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF293WLB, ENCFF359TIO 527572515 ENCODE Processing Pipeline 872fc83654d7d04eb1f9d46a771da815 https://www.encodeproject.org/files/ENCFF249WXY/@@download/ENCFF249WXY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF083IOI bigWig signal p-value ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF293WLB, ENCFF359TIO, ENCFF811PZE, ENCFF991UTU 944866184 ENCODE Processing Pipeline 4333457e3317ed9405e0e21d07bae94a https://www.encodeproject.org/files/ENCFF083IOI/@@download/ENCFF083IOI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF029DJG bigWig fold change over control ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF811PZE, ENCFF991UTU 632167004 ENCODE Processing Pipeline 6ffa810e1b327f8050f1df4b2554b0ca https://www.encodeproject.org/files/ENCFF029DJG/@@download/ENCFF029DJG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF382ULT bigWig fold change over control ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF293WLB, ENCFF359TIO, ENCFF811PZE, ENCFF991UTU 1179288906 ENCODE Processing Pipeline fa877a4b49b307abf8b1b20268b2fa7e https://www.encodeproject.org/files/ENCFF382ULT/@@download/ENCFF382ULT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF363RKC bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF293WLB, ENCFF359TIO, ENCFF811PZE, ENCFF991UTU 6553595 ENCODE Processing Pipeline c299ee0af7a4e92a2dd1635039dc61c8 https://www.encodeproject.org/files/ENCFF363RKC/@@download/ENCFF363RKC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF891RRU bigBed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF972ILN 13286386 ENCODE Processing Pipeline da7481d3bc86a15e954996a1979c5a00 https://www.encodeproject.org/files/ENCFF891RRU/@@download/ENCFF891RRU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF401BVO bigBed narrowPeak optimal idr thresholded peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF126PNX 626717 ENCODE Processing Pipeline b9debdc341685f0889869de45ba1ff26 https://www.encodeproject.org/files/ENCFF401BVO/@@download/ENCFF401BVO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF082XMZ fastq reads ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 1 50 single-ended 1860289356 Richard Myers, HAIB bd7647e36f43aceea44b537837ea01e6 SRA:SRR5339025 https://www.encodeproject.org/files/ENCFF082XMZ/@@download/ENCFF082XMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF963TEZ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF638ZSQ fastq reads ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 1 50 single-ended 1189060664 Richard Myers, HAIB c1ce882458544b321351ba94cfbeb8cb SRA:SRR5339024 https://www.encodeproject.org/files/ENCFF638ZSQ/@@download/ENCFF638ZSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF564XPO/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF761LNM bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 50 ENCFF638ZSQ, ENCFF643CGH 791308528 ENCODE Processing Pipeline d22749b8b1781295168d79cc154d0fe1 https://www.encodeproject.org/files/ENCFF761LNM/@@download/ENCFF761LNM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF719YYF bam unfiltered alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 50 ENCFF082XMZ, ENCFF643CGH 1698875040 ENCODE Processing Pipeline 7e7f524d18b30c3f5a4d3853484212dd https://www.encodeproject.org/files/ENCFF719YYF/@@download/ENCFF719YYF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF389GTE bam unfiltered alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 50 ENCFF082XMZ, ENCFF807MUK 1695303716 ENCODE Processing Pipeline 40178f55d50a74dd45dd5dcf588e61f2 https://www.encodeproject.org/files/ENCFF389GTE/@@download/ENCFF389GTE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF186KYZ bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 50 ENCFF082XMZ, ENCFF807MUK 589973230 ENCODE Processing Pipeline d148188c1e9aba56f5520e6182d3cfa7 https://www.encodeproject.org/files/ENCFF186KYZ/@@download/ENCFF186KYZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF225QQB bam unfiltered alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 50 ENCFF638ZSQ, ENCFF643CGH 1165912253 ENCODE Processing Pipeline c7a33fd77e21833e9994248ddd60afa5 https://www.encodeproject.org/files/ENCFF225QQB/@@download/ENCFF225QQB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF665IFS bam unfiltered alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 50 ENCFF638ZSQ, ENCFF807MUK 1163680212 ENCODE Processing Pipeline 94955e4172e980649113b9bf87326d96 https://www.encodeproject.org/files/ENCFF665IFS/@@download/ENCFF665IFS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF121VXJ bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 50 ENCFF638ZSQ, ENCFF807MUK 791329952 ENCODE Processing Pipeline da755cceba8e88abc0f5e3bd3d257db8 https://www.encodeproject.org/files/ENCFF121VXJ/@@download/ENCFF121VXJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF302HOU bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 50 ENCFF082XMZ, ENCFF643CGH 589904002 ENCODE Processing Pipeline 2ab751ca96a94de9f62e9bcc76e9425b https://www.encodeproject.org/files/ENCFF302HOU/@@download/ENCFF302HOU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF958OWT bigWig signal p-value ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF121VXJ, ENCFF829HKP 470167511 ENCODE Processing Pipeline 9b79b6d45532eb2f02a642166cde30e0 https://www.encodeproject.org/files/ENCFF958OWT/@@download/ENCFF958OWT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF457SWI bigWig fold change over control ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF121VXJ, ENCFF829HKP 351227943 ENCODE Processing Pipeline e4e10e2915a73ba4dbc0b8872192f1ca https://www.encodeproject.org/files/ENCFF457SWI/@@download/ENCFF457SWI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF176LVN bigWig signal p-value ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF121VXJ, ENCFF186KYZ, ENCFF829HKP, ENCFF876ZSM 812724557 ENCODE Processing Pipeline 9c0f38b54926dfea5c77b2b1ea15de01 https://www.encodeproject.org/files/ENCFF176LVN/@@download/ENCFF176LVN.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF145FTP bigBed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF263PBF 12013450 ENCODE Processing Pipeline 2f259f921882232e1a7baf68420cb4be https://www.encodeproject.org/files/ENCFF145FTP/@@download/ENCFF145FTP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF025LLL bigBed narrowPeak optimal idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF693PZH 1713981 ENCODE Processing Pipeline a88703a130d4340755e2cdae78165142 https://www.encodeproject.org/files/ENCFF025LLL/@@download/ENCFF025LLL.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF564ZUD bigWig signal p-value ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF186KYZ, ENCFF876ZSM 428636787 ENCODE Processing Pipeline 8ad99d28387ef39a952c57f59b400e26 https://www.encodeproject.org/files/ENCFF564ZUD/@@download/ENCFF564ZUD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF263PBF bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF121VXJ, ENCFF186KYZ, ENCFF829HKP, ENCFF876ZSM 5424258 ENCODE Processing Pipeline 74532065217057f0b6ba5b38e6a21c7f https://www.encodeproject.org/files/ENCFF263PBF/@@download/ENCFF263PBF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF284REP bigWig fold change over control ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF121VXJ, ENCFF186KYZ, ENCFF829HKP, ENCFF876ZSM 647596870 ENCODE Processing Pipeline 344ecda27db29b103d9f17a3b58e2f73 https://www.encodeproject.org/files/ENCFF284REP/@@download/ENCFF284REP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF721XMZ bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF186KYZ, ENCFF876ZSM 4478670 ENCODE Processing Pipeline bc76f2eab44b0aa0ed65b9105e5c573a https://www.encodeproject.org/files/ENCFF721XMZ/@@download/ENCFF721XMZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF093LZV bigBed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF721XMZ 10903780 ENCODE Processing Pipeline 3953a3fd494732f95a26a92f91d90e51 https://www.encodeproject.org/files/ENCFF093LZV/@@download/ENCFF093LZV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF106QRP bigWig fold change over control ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF186KYZ, ENCFF876ZSM 258863927 ENCODE Processing Pipeline a6ee1b45bd302e737d469b1ac833c734 https://www.encodeproject.org/files/ENCFF106QRP/@@download/ENCFF106QRP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF682TFX bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF121VXJ, ENCFF829HKP 4536822 ENCODE Processing Pipeline 898addb82a3a00236f8dd5143bea2588 https://www.encodeproject.org/files/ENCFF682TFX/@@download/ENCFF682TFX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF119UDS bigBed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF682TFX 11109005 ENCODE Processing Pipeline 1946a7180451cc6d08bd4b30b6abc539 https://www.encodeproject.org/files/ENCFF119UDS/@@download/ENCFF119UDS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF693PZH bed narrowPeak optimal idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF263PBF, ENCFF682TFX, ENCFF721XMZ 956798 ENCODE Processing Pipeline 204ad61bcdc9e26628e1deafb30a2fed https://www.encodeproject.org/files/ENCFF693PZH/@@download/ENCFF693PZH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF827JLH bigWig signal p-value ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF389HKQ, ENCFF761LNM 471921684 ENCODE Processing Pipeline 2c1ff0584bcaad9fd093eb422007ef09 https://www.encodeproject.org/files/ENCFF827JLH/@@download/ENCFF827JLH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF969EJJ bigWig signal p-value ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF302HOU, ENCFF802YSD 425531676 ENCODE Processing Pipeline eb2c7ff932c4584e4ac61055346265d8 https://www.encodeproject.org/files/ENCFF969EJJ/@@download/ENCFF969EJJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF095LSE bigWig signal p-value ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF302HOU, ENCFF389HKQ, ENCFF761LNM, ENCFF802YSD 871725762 ENCODE Processing Pipeline 0683fdee87f26150b248ac7443e81b8a https://www.encodeproject.org/files/ENCFF095LSE/@@download/ENCFF095LSE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF795CNP bigWig fold change over control ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF389HKQ, ENCFF761LNM 350114495 ENCODE Processing Pipeline 9d4e32313ea9fcc18ba311e0279a5f31 https://www.encodeproject.org/files/ENCFF795CNP/@@download/ENCFF795CNP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF623DEH bigWig fold change over control ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF302HOU, ENCFF802YSD 258753644 ENCODE Processing Pipeline 593bec798e3b40d84656e3782dbafdfe https://www.encodeproject.org/files/ENCFF623DEH/@@download/ENCFF623DEH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF205ZOQ bigWig fold change over control ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF302HOU, ENCFF389HKQ, ENCFF761LNM, ENCFF802YSD 644977396 ENCODE Processing Pipeline d6d74d11d6ce39014a7bec803bb35b0e https://www.encodeproject.org/files/ENCFF205ZOQ/@@download/ENCFF205ZOQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF900CAV bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF302HOU, ENCFF802YSD 4346402 ENCODE Processing Pipeline 4b8eb3d0b1c635cbe68f6b31a224efe4 https://www.encodeproject.org/files/ENCFF900CAV/@@download/ENCFF900CAV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF979JFX bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF389HKQ, ENCFF761LNM 4438714 ENCODE Processing Pipeline d2a2473b35cd1fda5f822b41de2373f1 https://www.encodeproject.org/files/ENCFF979JFX/@@download/ENCFF979JFX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF810LRZ bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF302HOU, ENCFF389HKQ, ENCFF761LNM, ENCFF802YSD 5310747 ENCODE Processing Pipeline 5a18df8de13a1b786d78349e409ed453 https://www.encodeproject.org/files/ENCFF810LRZ/@@download/ENCFF810LRZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF590PHE bigBed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF979JFX 10901717 ENCODE Processing Pipeline eb05ac26a67e65109492226855a6c11f https://www.encodeproject.org/files/ENCFF590PHE/@@download/ENCFF590PHE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF973ZPF bigBed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF900CAV 10683551 ENCODE Processing Pipeline ffb7012b58bc29b1b266618c3ee4b4aa https://www.encodeproject.org/files/ENCFF973ZPF/@@download/ENCFF973ZPF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF424UCZ bigBed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF810LRZ 11919440 ENCODE Processing Pipeline 3ada51cd28a21f8bb86580208ddc5134 https://www.encodeproject.org/files/ENCFF424UCZ/@@download/ENCFF424UCZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF904CNB bed narrowPeak optimal idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF810LRZ, ENCFF900CAV, ENCFF979JFX 966706 ENCODE Processing Pipeline d8d35f60b4d608a0884deb085b87c222 https://www.encodeproject.org/files/ENCFF904CNB/@@download/ENCFF904CNB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF213BLR bigBed narrowPeak optimal idr thresholded peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF904CNB 1729535 ENCODE Processing Pipeline d918aba1b36b0835bf73a8f8f8d4a97b https://www.encodeproject.org/files/ENCFF213BLR/@@download/ENCFF213BLR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF545DFQ fastq reads ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 1 50 single-ended 1475733965 Richard Myers, HAIB 912c3c24a9efe43a7107d9131134a2fe SRA:SRR5339279 https://www.encodeproject.org/files/ENCFF545DFQ/@@download/ENCFF545DFQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF993VKM/ released antibody characterized with exemption ENCFF855OMG fastq reads ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 1 50 single-ended 1520743272 Richard Myers, HAIB 8004fe1d2de34c029d64ef985dcfaccf SRA:SRR5339278 https://www.encodeproject.org/files/ENCFF855OMG/@@download/ENCFF855OMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF913JVQ/ released antibody characterized with exemption ENCFF596ABH bam unfiltered alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 50 ENCFF807MUK, ENCFF855OMG 1631253039 ENCODE Processing Pipeline 871c8bc8bce169f2a1e92633e49d25bd https://www.encodeproject.org/files/ENCFF596ABH/@@download/ENCFF596ABH.bam hg19 released antibody characterized with exemption ENCFF640OUB bam unfiltered alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 50 ENCFF545DFQ, ENCFF643CGH 1661317887 ENCODE Processing Pipeline 7a64d16e4437d97bfdf116ebd0c69e66 https://www.encodeproject.org/files/ENCFF640OUB/@@download/ENCFF640OUB.bam GRCh38 released antibody characterized with exemption ENCFF995SRK bam unfiltered alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 50 ENCFF545DFQ, ENCFF807MUK 1654893433 ENCODE Processing Pipeline 2783e433c0e44facf10c6dc24e8df9ca https://www.encodeproject.org/files/ENCFF995SRK/@@download/ENCFF995SRK.bam hg19 released antibody characterized with exemption ENCFF228FGR bam unfiltered alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 50 ENCFF643CGH, ENCFF855OMG 1636782812 ENCODE Processing Pipeline 27a2f733fc5e3af45983fe27e513430f https://www.encodeproject.org/files/ENCFF228FGR/@@download/ENCFF228FGR.bam GRCh38 released antibody characterized with exemption ENCFF749LRJ bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 50 ENCFF545DFQ, ENCFF643CGH 1257666090 ENCODE Processing Pipeline 46bdf485f39dabc7d78d1ee7ae134dd9 https://www.encodeproject.org/files/ENCFF749LRJ/@@download/ENCFF749LRJ.bam GRCh38 released antibody characterized with exemption ENCFF354IGM bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 50 ENCFF807MUK, ENCFF855OMG 1231149238 ENCODE Processing Pipeline d31533ad89e812751fa92dd1abdda1f4 https://www.encodeproject.org/files/ENCFF354IGM/@@download/ENCFF354IGM.bam hg19 released antibody characterized with exemption ENCFF356PMF bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 50 ENCFF545DFQ, ENCFF807MUK 1258158493 ENCODE Processing Pipeline 81b887684115ee16d2be154af102071d https://www.encodeproject.org/files/ENCFF356PMF/@@download/ENCFF356PMF.bam hg19 released antibody characterized with exemption ENCFF408TSG bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 50 ENCFF643CGH, ENCFF855OMG 1230585502 ENCODE Processing Pipeline 2c5fa36d486b3f941a09551cc95b8c7c https://www.encodeproject.org/files/ENCFF408TSG/@@download/ENCFF408TSG.bam GRCh38 released antibody characterized with exemption ENCFF373FDW bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF354IGM, ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 6696113 ENCODE Processing Pipeline 255615d0001ae16e53d98f85676ca8cc https://www.encodeproject.org/files/ENCFF373FDW/@@download/ENCFF373FDW.bed.gz hg19 released antibody characterized with exemption ENCFF962PLB bigWig signal p-value ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF354IGM, ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 1195920673 ENCODE Processing Pipeline e732c6173f4cd6670c33513534b1e9a4 https://www.encodeproject.org/files/ENCFF962PLB/@@download/ENCFF962PLB.bigWig hg19 released antibody characterized with exemption ENCFF898RYD bigWig signal p-value ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF354IGM, ENCFF444TNY, ENCFF847YDJ 932163904 ENCODE Processing Pipeline a1dd7d00f737407c72cd9efebfa4bac3 https://www.encodeproject.org/files/ENCFF898RYD/@@download/ENCFF898RYD.bigWig hg19 released antibody characterized with exemption ENCFF052NYE bigWig signal p-value ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 1083190001 ENCODE Processing Pipeline 1a00eda9b7da759c6a48635222b1c781 https://www.encodeproject.org/files/ENCFF052NYE/@@download/ENCFF052NYE.bigWig hg19 released antibody characterized with exemption ENCFF370VGF bigWig fold change over control ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF354IGM, ENCFF444TNY, ENCFF847YDJ 746633169 ENCODE Processing Pipeline 78365e45687f322c91353df4873899ac https://www.encodeproject.org/files/ENCFF370VGF/@@download/ENCFF370VGF.bigWig hg19 released antibody characterized with exemption ENCFF844HBQ bed narrowPeak optimal idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF001TDO, ENCFF077SAE, ENCFF373FDW, ENCFF939WYL 312304 ENCODE Processing Pipeline b304df9dcf031ea1956760833ad45da5 https://www.encodeproject.org/files/ENCFF844HBQ/@@download/ENCFF844HBQ.bed.gz hg19 released antibody characterized with exemption ENCFF161TZI bigWig fold change over control ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF354IGM, ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 1237402083 ENCODE Processing Pipeline 3d4e1fcef09a19938bca5894a677ed1d https://www.encodeproject.org/files/ENCFF161TZI/@@download/ENCFF161TZI.bigWig hg19 released antibody characterized with exemption ENCFF077SAE bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 6051932 ENCODE Processing Pipeline dede322ac318214dd1b720b562e528c6 https://www.encodeproject.org/files/ENCFF077SAE/@@download/ENCFF077SAE.bed.gz hg19 released antibody characterized with exemption ENCFF135CVS bigBed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF373FDW 13708298 ENCODE Processing Pipeline 7b1cda334714ae509bcb289a87f3198a https://www.encodeproject.org/files/ENCFF135CVS/@@download/ENCFF135CVS.bigBed hg19 released antibody characterized with exemption ENCFF958PWG bigWig fold change over control ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 843297666 ENCODE Processing Pipeline cdfbf5b3492ed7811bc4765181545fc8 https://www.encodeproject.org/files/ENCFF958PWG/@@download/ENCFF958PWG.bigWig hg19 released antibody characterized with exemption ENCFF163FGN bigBed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF939WYL 11465874 ENCODE Processing Pipeline d3e989e5c10e131933edcf99dd890208 https://www.encodeproject.org/files/ENCFF163FGN/@@download/ENCFF163FGN.bigBed hg19 released antibody characterized with exemption ENCFF912KUK bigBed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF077SAE 11421824 ENCODE Processing Pipeline d4360b89ce701f6376574ae195b1129b https://www.encodeproject.org/files/ENCFF912KUK/@@download/ENCFF912KUK.bigBed hg19 released antibody characterized with exemption ENCFF986JLG bigBed narrowPeak conservative idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF063BGI 540888 ENCODE Processing Pipeline a93335adafbf990ed1f33ef09cc59c11 https://www.encodeproject.org/files/ENCFF986JLG/@@download/ENCFF986JLG.bigBed hg19 released antibody characterized with exemption ENCFF016MFS bigBed narrowPeak optimal idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF844HBQ 584805 ENCODE Processing Pipeline c3c8479c5cf32538c1207ef353c7bf6a https://www.encodeproject.org/files/ENCFF016MFS/@@download/ENCFF016MFS.bigBed hg19 released antibody characterized with exemption ENCFF939WYL bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF354IGM, ENCFF444TNY, ENCFF847YDJ 6086390 ENCODE Processing Pipeline d487c96986116ccb87b786d9ddfd69c7 https://www.encodeproject.org/files/ENCFF939WYL/@@download/ENCFF939WYL.bed.gz hg19 released antibody characterized with exemption ENCFF063BGI bed narrowPeak conservative idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF001TDO, ENCFF077SAE, ENCFF373FDW, ENCFF939WYL 279830 ENCODE Processing Pipeline 05c50ae41a8b131604292e1cbca9838d https://www.encodeproject.org/files/ENCFF063BGI/@@download/ENCFF063BGI.bed.gz hg19 released antibody characterized with exemption ENCFF601WHJ bigWig signal p-value ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF092PMQ, ENCFF162ZOO, ENCFF408TSG 940130062 ENCODE Processing Pipeline b787691939840bb568660d9dbeed1a58 https://www.encodeproject.org/files/ENCFF601WHJ/@@download/ENCFF601WHJ.bigWig GRCh38 released antibody characterized with exemption ENCFF720CZD bigWig signal p-value ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF749LRJ 947115561 ENCODE Processing Pipeline 01dce0ffb04930967f100b4613f9a1dd https://www.encodeproject.org/files/ENCFF720CZD/@@download/ENCFF720CZD.bigWig GRCh38 released antibody characterized with exemption ENCFF237STA bigWig signal p-value ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF408TSG, ENCFF749LRJ 1234643491 ENCODE Processing Pipeline b1bfc6b921ca4f2c85979b6c8eabc0c4 https://www.encodeproject.org/files/ENCFF237STA/@@download/ENCFF237STA.bigWig GRCh38 released antibody characterized with exemption ENCFF834NIU bigWig fold change over control ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF092PMQ, ENCFF162ZOO, ENCFF408TSG 761376638 ENCODE Processing Pipeline c058b09b9b3a46826bf8ad83a8d40082 https://www.encodeproject.org/files/ENCFF834NIU/@@download/ENCFF834NIU.bigWig GRCh38 released antibody characterized with exemption ENCFF127LEK bigWig fold change over control ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF749LRJ 838156251 ENCODE Processing Pipeline b310faf45852fafc51ba848844de2e1f https://www.encodeproject.org/files/ENCFF127LEK/@@download/ENCFF127LEK.bigWig GRCh38 released antibody characterized with exemption ENCFF845AHN bigWig fold change over control ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF408TSG, ENCFF749LRJ 1240301089 ENCODE Processing Pipeline 8777c9e4b09028749ed72c6c0950345b https://www.encodeproject.org/files/ENCFF845AHN/@@download/ENCFF845AHN.bigWig GRCh38 released antibody characterized with exemption ENCFF298RGN bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF408TSG, ENCFF749LRJ 6551750 ENCODE Processing Pipeline 59b5c167384b9b8df5ffd6ca20a2e722 https://www.encodeproject.org/files/ENCFF298RGN/@@download/ENCFF298RGN.bed.gz GRCh38 released antibody characterized with exemption ENCFF576FKD bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF092PMQ, ENCFF162ZOO, ENCFF408TSG 5898968 ENCODE Processing Pipeline 12f62e333fe9f0f6f20cfe7c040ac0c7 https://www.encodeproject.org/files/ENCFF576FKD/@@download/ENCFF576FKD.bed.gz GRCh38 released antibody characterized with exemption ENCFF379LKE bed narrowPeak optimal idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF298RGN, ENCFF419RSJ, ENCFF576FKD, ENCFF601FGL 310263 ENCODE Processing Pipeline 933a765031fc18c258b3ed9ebf3c4866 https://www.encodeproject.org/files/ENCFF379LKE/@@download/ENCFF379LKE.bed.gz GRCh38 released antibody characterized with exemption ENCFF601FGL bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF749LRJ 5961921 ENCODE Processing Pipeline f31122c313780f824795c80a6e5304b9 https://www.encodeproject.org/files/ENCFF601FGL/@@download/ENCFF601FGL.bed.gz GRCh38 released antibody characterized with exemption ENCFF013GMQ bigBed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF576FKD 11445683 ENCODE Processing Pipeline 93cc8ec8030e9231e937939f53b8e75f https://www.encodeproject.org/files/ENCFF013GMQ/@@download/ENCFF013GMQ.bigBed GRCh38 released antibody characterized with exemption ENCFF432FCA bigBed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF601FGL 11441601 ENCODE Processing Pipeline dfa6da6a36657673944429fb877137ce https://www.encodeproject.org/files/ENCFF432FCA/@@download/ENCFF432FCA.bigBed GRCh38 released antibody characterized with exemption ENCFF882NVQ bigBed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF298RGN 13712102 ENCODE Processing Pipeline 62e5fbc55b18fce09a71fd4e30e6e0df https://www.encodeproject.org/files/ENCFF882NVQ/@@download/ENCFF882NVQ.bigBed GRCh38 released antibody characterized with exemption ENCFF512PBA bed narrowPeak conservative idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF298RGN, ENCFF419RSJ, ENCFF576FKD, ENCFF601FGL 283889 ENCODE Processing Pipeline 07a616f9dbdfaa1d5c7a2f9886e2b00f https://www.encodeproject.org/files/ENCFF512PBA/@@download/ENCFF512PBA.bed.gz GRCh38 released antibody characterized with exemption ENCFF589PMC bigBed narrowPeak optimal idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF379LKE 584493 ENCODE Processing Pipeline 1964ae98490573f6f5578426d8703fa4 https://www.encodeproject.org/files/ENCFF589PMC/@@download/ENCFF589PMC.bigBed GRCh38 released antibody characterized with exemption ENCFF924OOV bigBed narrowPeak conservative idr thresholded peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1, 2 ENCFF512PBA 547663 ENCODE Processing Pipeline 6614125cb3b29cdf283d274a5f51d606 https://www.encodeproject.org/files/ENCFF924OOV/@@download/ENCFF924OOV.bigBed GRCh38 released antibody characterized with exemption ENCFF513XHM fastq reads ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF451LYL 3787547433 Michael Snyder, Stanford 740a5e534bda14b2e20fa3f675808b80 https://www.encodeproject.org/files/ENCFF513XHM/@@download/ENCFF513XHM.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF571LSL fastq reads ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF497SRX 3602184914 Michael Snyder, Stanford c75bdbf5f30e018783d567b07fb5fb9b https://www.encodeproject.org/files/ENCFF571LSL/@@download/ENCFF571LSL.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF451LYL fastq reads ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF513XHM 4095288382 Michael Snyder, Stanford da7e78cc5e14defc39a18129998919d7 https://www.encodeproject.org/files/ENCFF451LYL/@@download/ENCFF451LYL.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF497SRX fastq reads ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF571LSL 3229283929 Michael Snyder, Stanford fdab5846f521030ae89bf6656a9c28c3 https://www.encodeproject.org/files/ENCFF497SRX/@@download/ENCFF497SRX.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF250GVB bam unfiltered alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF497SRX, ENCFF571LSL, ENCFF807MUK 6437295660 ENCODE Processing Pipeline cea3e45ca46a1767ceb469f18293f63e https://www.encodeproject.org/files/ENCFF250GVB/@@download/ENCFF250GVB.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF742INW bam unfiltered alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451LYL, ENCFF513XHM, ENCFF807MUK 7455786411 ENCODE Processing Pipeline e98728f31128e862d2e2735ffa0759f6 https://www.encodeproject.org/files/ENCFF742INW/@@download/ENCFF742INW.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF643VVA bam unfiltered alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF497SRX, ENCFF571LSL, ENCFF643CGH 6444577788 ENCODE Processing Pipeline f29d839176913a1e05d7f8152fbddf57 https://www.encodeproject.org/files/ENCFF643VVA/@@download/ENCFF643VVA.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF008GDP bam unfiltered alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451LYL, ENCFF513XHM, ENCFF643CGH 7467049722 ENCODE Processing Pipeline ebafccea9885e81b8ddad9e376e5aa94 https://www.encodeproject.org/files/ENCFF008GDP/@@download/ENCFF008GDP.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF489ACL bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF497SRX, ENCFF571LSL, ENCFF807MUK 4739484406 ENCODE Processing Pipeline a8116f9bb5e713dfff9174b2e0c17c44 https://www.encodeproject.org/files/ENCFF489ACL/@@download/ENCFF489ACL.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF550MIV bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF497SRX, ENCFF571LSL, ENCFF643CGH 4745639790 ENCODE Processing Pipeline b4832847102ce0373398cdb7a6018e92 https://www.encodeproject.org/files/ENCFF550MIV/@@download/ENCFF550MIV.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF756OQH bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451LYL, ENCFF513XHM, ENCFF643CGH 5935525124 ENCODE Processing Pipeline 3ba1ae58c188d49e2f245f147a8dcabf https://www.encodeproject.org/files/ENCFF756OQH/@@download/ENCFF756OQH.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF970LPR bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451LYL, ENCFF513XHM, ENCFF807MUK 5923970706 ENCODE Processing Pipeline 076508ef1c4867218af71076d7180df5 https://www.encodeproject.org/files/ENCFF970LPR/@@download/ENCFF970LPR.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF697XWY bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF970LPR 7113255 ENCODE Processing Pipeline e189fec681cec63f4395946a62ac2d35 https://www.encodeproject.org/files/ENCFF697XWY/@@download/ENCFF697XWY.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF673PFV bigBed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF697XWY 13191756 ENCODE Processing Pipeline f1f2dce1748e0e476e83a30890f142f5 https://www.encodeproject.org/files/ENCFF673PFV/@@download/ENCFF673PFV.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF267EQE bigWig signal p-value ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF970LPR 1791563926 ENCODE Processing Pipeline 1268b94590f85690f7e460a53ba1fbe1 https://www.encodeproject.org/files/ENCFF267EQE/@@download/ENCFF267EQE.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF638ZRZ bigWig fold change over control ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF970LPR 2124179616 ENCODE Processing Pipeline 19a4330bfbaa2ce5e2a2b16f918cad6a https://www.encodeproject.org/files/ENCFF638ZRZ/@@download/ENCFF638ZRZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF540IHF bigWig signal p-value ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF489ACL, ENCFF834TUP, ENCFF970LPR 2390186597 ENCODE Processing Pipeline 44836400d4267a13aacbe55ef41d83be https://www.encodeproject.org/files/ENCFF540IHF/@@download/ENCFF540IHF.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF830MKJ bigWig fold change over control ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF489ACL, ENCFF834TUP, ENCFF970LPR 2632200998 ENCODE Processing Pipeline 798eb3dbf7aa102c156999dd7ab95297 https://www.encodeproject.org/files/ENCFF830MKJ/@@download/ENCFF830MKJ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF426NDH bigWig signal p-value ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF756OQH, ENCFF790TAN 1903157376 ENCODE Processing Pipeline 3662b9dcf77374226fa43917b76a190e https://www.encodeproject.org/files/ENCFF426NDH/@@download/ENCFF426NDH.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF449ZBD bed narrowPeak conservative idr thresholded peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF272TLJ, ENCFF358CUD, ENCFF419RSJ, ENCFF493BPW 286380 ENCODE Processing Pipeline 741eda8be70214d7abc12cd7b68fb252 https://www.encodeproject.org/files/ENCFF449ZBD/@@download/ENCFF449ZBD.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF317IVJ bigBed narrowPeak conservative idr thresholded peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF449ZBD 624957 ENCODE Processing Pipeline 13c0adf57d89ad997239868bcc2cceaf https://www.encodeproject.org/files/ENCFF317IVJ/@@download/ENCFF317IVJ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF223HDM bed narrowPeak optimal idr thresholded peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF272TLJ, ENCFF358CUD, ENCFF419RSJ, ENCFF493BPW 283821 ENCODE Processing Pipeline ff04f0f1d6729a6be56ab938910399d6 https://www.encodeproject.org/files/ENCFF223HDM/@@download/ENCFF223HDM.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF457NXT bigWig signal p-value ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF489ACL, ENCFF834TUP 1492321949 ENCODE Processing Pipeline 166c19aae8bc0b7885ce4157e1c950ef https://www.encodeproject.org/files/ENCFF457NXT/@@download/ENCFF457NXT.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF238CDA bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF489ACL, ENCFF834TUP, ENCFF970LPR 7227527 ENCODE Processing Pipeline b14d68921c194c28ad60d9d651545ea6 https://www.encodeproject.org/files/ENCFF238CDA/@@download/ENCFF238CDA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF564OPF bigWig fold change over control ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF550MIV, ENCFF712WXB 1507784474 ENCODE Processing Pipeline 4f53523d02bac33b1f04852289c32d2f https://www.encodeproject.org/files/ENCFF564OPF/@@download/ENCFF564OPF.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF380IDS bigBed narrowPeak optimal idr thresholded peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF223HDM 627115 ENCODE Processing Pipeline ccf1ad75253fdc0e24edc4035d9f4e10 https://www.encodeproject.org/files/ENCFF380IDS/@@download/ENCFF380IDS.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF656UAV bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF489ACL, ENCFF834TUP 6972023 ENCODE Processing Pipeline f3f1963e6d236b562fc35d5b12e9b8cc https://www.encodeproject.org/files/ENCFF656UAV/@@download/ENCFF656UAV.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF896UNK bigBed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF238CDA 12983260 ENCODE Processing Pipeline c7d8a788e87476a2a0ee141347584509 https://www.encodeproject.org/files/ENCFF896UNK/@@download/ENCFF896UNK.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF021VGP bigWig fold change over control ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF489ACL, ENCFF834TUP 1510226676 ENCODE Processing Pipeline a15a878065c51e75f0a795f7edd84905 https://www.encodeproject.org/files/ENCFF021VGP/@@download/ENCFF021VGP.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF633YMT bigBed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF656UAV 13181668 ENCODE Processing Pipeline 200610f71d5a6d1c5e6206fc9141dd36 https://www.encodeproject.org/files/ENCFF633YMT/@@download/ENCFF633YMT.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF785HXY bed narrowPeak optimal idr thresholded peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF238CDA, ENCFF656UAV, ENCFF697XWY 287268 ENCODE Processing Pipeline dee290c401ff14a52a21cbe5f1a21352 https://www.encodeproject.org/files/ENCFF785HXY/@@download/ENCFF785HXY.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF489AZN bigBed narrowPeak optimal idr thresholded peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF785HXY 622157 ENCODE Processing Pipeline 1f86b123ad4053924f9a691a13cc84d5 https://www.encodeproject.org/files/ENCFF489AZN/@@download/ENCFF489AZN.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF059UCT bigWig signal p-value ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF550MIV, ENCFF712WXB 1456334475 ENCODE Processing Pipeline 3a0e811968f1f7a436815b012233f44e https://www.encodeproject.org/files/ENCFF059UCT/@@download/ENCFF059UCT.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF008LLM bigBed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF272TLJ 13000070 ENCODE Processing Pipeline 0b9fcfbbe117854f4040d58c7c9d83d6 https://www.encodeproject.org/files/ENCFF008LLM/@@download/ENCFF008LLM.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF786VJU bigWig fold change over control ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF756OQH, ENCFF790TAN 2127074357 ENCODE Processing Pipeline b5256d08aef8f0d086584cfbc186cbc0 https://www.encodeproject.org/files/ENCFF786VJU/@@download/ENCFF786VJU.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF358CUD bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF756OQH, ENCFF790TAN 7119039 ENCODE Processing Pipeline 221fc1c16f7cde030da10e55e81f11f2 https://www.encodeproject.org/files/ENCFF358CUD/@@download/ENCFF358CUD.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF694SPB bigBed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF358CUD 13209870 ENCODE Processing Pipeline 7d9fbecb33dc69c9592aa04cbfd4d8bf https://www.encodeproject.org/files/ENCFF694SPB/@@download/ENCFF694SPB.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF105JFB bigWig signal p-value ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF550MIV, ENCFF712WXB, ENCFF756OQH, ENCFF790TAN 2394156121 ENCODE Processing Pipeline ece87072a90b5311449f38bc27c1adb2 https://www.encodeproject.org/files/ENCFF105JFB/@@download/ENCFF105JFB.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF272TLJ bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF550MIV, ENCFF712WXB, ENCFF756OQH, ENCFF790TAN 7229012 ENCODE Processing Pipeline 66672a7ac2fbf473ec795a19430bab23 https://www.encodeproject.org/files/ENCFF272TLJ/@@download/ENCFF272TLJ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF414ANN bigWig fold change over control ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF550MIV, ENCFF712WXB, ENCFF756OQH, ENCFF790TAN 2636531825 ENCODE Processing Pipeline e693a1b07665934c86ac8a1b6f468f94 https://www.encodeproject.org/files/ENCFF414ANN/@@download/ENCFF414ANN.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF493BPW bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF550MIV, ENCFF712WXB 6970588 ENCODE Processing Pipeline 009ee57e4f5cde4119aa9407c7e070bf https://www.encodeproject.org/files/ENCFF493BPW/@@download/ENCFF493BPW.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF371JEO bigBed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF493BPW 13191458 ENCODE Processing Pipeline 88f98b7df16556ba9444b6e9c0d43f79 https://www.encodeproject.org/files/ENCFF371JEO/@@download/ENCFF371JEO.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF000NPX bigBed broadPeak peaks ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVP 359080 Richard Myers, HAIB d464c29d1af36c75607174ee5f00fad7 https://www.encodeproject.org/files/ENCFF000NPX/@@download/ENCFF000NPX.bigBed hg19 released biological replicates with identical biosample ENCFF000NPY bam alignments ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NQI 824808008 Richard Myers, HAIB 7ade57b694abb7d0d37100614d744848 https://www.encodeproject.org/files/ENCFF000NPY/@@download/ENCFF000NPY.bam hg19 released biological replicates with identical biosample ENCFF000NPZ bigBed broadPeak peaks ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVQ 237984 Richard Myers, HAIB b1ac992a4502af7d023cb5de554600ed https://www.encodeproject.org/files/ENCFF000NPZ/@@download/ENCFF000NPZ.bigBed hg19 released biological replicates with identical biosample ENCFF000NQA bigWig raw signal ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 271726694 Richard Myers, HAIB 6b701016d81a73ff47a01cf3a2902aeb https://www.encodeproject.org/files/ENCFF000NQA/@@download/ENCFF000NQA.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NQB bigWig raw signal ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 95435810 Richard Myers, HAIB 7c855fd5b38f629360ed9514510fbec4 https://www.encodeproject.org/files/ENCFF000NQB/@@download/ENCFF000NQB.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NQC bam alignments ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NQR 2786261745 Richard Myers, HAIB 738856f7a8760fc6924c4f40de933d6e https://www.encodeproject.org/files/ENCFF000NQC/@@download/ENCFF000NQC.bam hg19 released biological replicates with identical biosample ENCFF000NQI fastq reads ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 849477517 Richard Myers, HAIB 8f138babe6420b8e717684712da69321 https://www.encodeproject.org/files/ENCFF000NQI/@@download/ENCFF000NQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NQR fastq reads ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2968007224 Richard Myers, HAIB d539d4171873829a73fcfd79562c410d https://www.encodeproject.org/files/ENCFF000NQR/@@download/ENCFF000NQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVP bed broadPeak peaks ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 205008 Richard Myers, HAIB a5256a393dae2b047a453eaa1ca781b7 https://www.encodeproject.org/files/ENCFF001TVP/@@download/ENCFF001TVP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TVQ bed broadPeak peaks ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 108603 Richard Myers, HAIB edfde51f2052fa81146bdc86b6ee328d https://www.encodeproject.org/files/ENCFF001TVQ/@@download/ENCFF001TVQ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF608VRV fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 1 ENCFF679KEU 919993225 Michael Snyder, Stanford 919ce889178b2194c0ec242478496c0d https://www.encodeproject.org/files/ENCFF608VRV/@@download/ENCFF608VRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF520VGY fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 1 ENCFF655NYA 1018293764 Michael Snyder, Stanford ae2cd8232e4b8bc50707b3c492eed2fe https://www.encodeproject.org/files/ENCFF520VGY/@@download/ENCFF520VGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF679KEU fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 2 ENCFF608VRV 950067173 Michael Snyder, Stanford aeb512cfe94cdf8cc75bdb182e087086 https://www.encodeproject.org/files/ENCFF679KEU/@@download/ENCFF679KEU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF655NYA fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 2 ENCFF520VGY 1046542897 Michael Snyder, Stanford 9e142c2377422e0c79ae17547335964e https://www.encodeproject.org/files/ENCFF655NYA/@@download/ENCFF655NYA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF619GMD bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF520VGY, ENCFF655NYA, ENCFF807MUK 1660320050 ENCODE Processing Pipeline 7574f073a2cfb1159667dd3800e8554c https://www.encodeproject.org/files/ENCFF619GMD/@@download/ENCFF619GMD.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF439QZV bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF608VRV, ENCFF679KEU, ENCFF807MUK 1382142275 ENCODE Processing Pipeline 67a28844c9caaefb83426aeb06cd34b6 https://www.encodeproject.org/files/ENCFF439QZV/@@download/ENCFF439QZV.bam hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF066RUQ fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 1 ENCFF964VCI 3275391801 Michael Snyder, Stanford b4f26ce62c7b8bd62012b1470c825434 https://www.encodeproject.org/files/ENCFF066RUQ/@@download/ENCFF066RUQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF964VCI fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 1 100 paired-ended 2 ENCFF066RUQ 3720049244 Michael Snyder, Stanford 8ef7103ea3cc92884404954e24b68196 https://www.encodeproject.org/files/ENCFF964VCI/@@download/ENCFF964VCI.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF487QUS fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 2 ENCFF156SNY 5593989595 Michael Snyder, Stanford 9624e7a6b5a01068d8b8ec1b345b3a4c https://www.encodeproject.org/files/ENCFF487QUS/@@download/ENCFF487QUS.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF156SNY fastq reads ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 1 100 paired-ended 1 ENCFF487QUS 5015233046 Michael Snyder, Stanford 0f6048bf30cbe1a67c84d3caa362d1b8 https://www.encodeproject.org/files/ENCFF156SNY/@@download/ENCFF156SNY.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF587ZOR bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF643CGH, ENCFF964VCI 5830602953 ENCODE Processing Pipeline 975c4340b4ce04669220d8b1eda4dbb2 https://www.encodeproject.org/files/ENCFF587ZOR/@@download/ENCFF587ZOR.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF055PTG bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF807MUK, ENCFF964VCI 5835431875 ENCODE Processing Pipeline fd9924d24cfa5a4f6879e5a6879b7852 https://www.encodeproject.org/files/ENCFF055PTG/@@download/ENCFF055PTG.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF065CIX bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF643CGH 3961420523 ENCODE Processing Pipeline b0a02feebd03a540a2c74230d265abf8 https://www.encodeproject.org/files/ENCFF065CIX/@@download/ENCFF065CIX.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF472SWE bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF807MUK 8746766721 ENCODE Processing Pipeline 5a2835408243373cb95642f73eab7de8 https://www.encodeproject.org/files/ENCFF472SWE/@@download/ENCFF472SWE.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF250HJQ bam unfiltered alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF643CGH 8733583988 ENCODE Processing Pipeline be616218e1d7a5d1706f867cdcd68c30 https://www.encodeproject.org/files/ENCFF250HJQ/@@download/ENCFF250HJQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF807RLO bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF643CGH, ENCFF964VCI 2558569209 ENCODE Processing Pipeline bb8c5262b824bd68e508f9b5ed0e3992 https://www.encodeproject.org/files/ENCFF807RLO/@@download/ENCFF807RLO.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF708NLM bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF807MUK, ENCFF964VCI 2555054563 ENCODE Processing Pipeline e8e1ad92e262be4c4f80c8ecb45f8402 https://www.encodeproject.org/files/ENCFF708NLM/@@download/ENCFF708NLM.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF341WGX bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF807MUK 3947295810 ENCODE Processing Pipeline 71fe628b9fece7d2a014fe4ec8a1dd5d https://www.encodeproject.org/files/ENCFF341WGX/@@download/ENCFF341WGX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF599NIB bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 1029300813 ENCODE Processing Pipeline 7a1df70f12c98fb48afcf1458dbcf53b https://www.encodeproject.org/files/ENCFF599NIB/@@download/ENCFF599NIB.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF583OFU bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 1135894452 ENCODE Processing Pipeline ac8630113e3af7c188ac4272abe6f04f https://www.encodeproject.org/files/ENCFF583OFU/@@download/ENCFF583OFU.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF058FAY bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF287SKW, ENCFF341WGX, ENCFF708NLM, ENCFF941TZZ 1806105045 ENCODE Processing Pipeline 6a839ca5a0abbac1711de95105854878 https://www.encodeproject.org/files/ENCFF058FAY/@@download/ENCFF058FAY.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF273UKE bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 999705548 ENCODE Processing Pipeline feeb39c2c9c13fc8dcf93f722e6f99d8 https://www.encodeproject.org/files/ENCFF273UKE/@@download/ENCFF273UKE.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF744PJU bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 1390076667 ENCODE Processing Pipeline 9e1210818e3459cd83f9f263ccb2a280 https://www.encodeproject.org/files/ENCFF744PJU/@@download/ENCFF744PJU.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF261BLY bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF287SKW, ENCFF341WGX, ENCFF708NLM, ENCFF941TZZ 2167710119 ENCODE Processing Pipeline ec75df75f3ec1fab21b7ad3ddaee615c https://www.encodeproject.org/files/ENCFF261BLY/@@download/ENCFF261BLY.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF047ZBU bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 6753854 ENCODE Processing Pipeline d27b072c741a350d638f0f1bba53c8a4 https://www.encodeproject.org/files/ENCFF047ZBU/@@download/ENCFF047ZBU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF922PHV bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 6969742 ENCODE Processing Pipeline 6700d7b2ae8dec2c164fcf17c1a6a239 https://www.encodeproject.org/files/ENCFF922PHV/@@download/ENCFF922PHV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF513BIR bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF287SKW, ENCFF341WGX, ENCFF708NLM, ENCFF941TZZ 7263291 ENCODE Processing Pipeline b206246664015eea87cbeb598db6e41c https://www.encodeproject.org/files/ENCFF513BIR/@@download/ENCFF513BIR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF522EKF bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF047ZBU 13190169 ENCODE Processing Pipeline c3692c1b7c0cce6374df18c3903ec231 https://www.encodeproject.org/files/ENCFF522EKF/@@download/ENCFF522EKF.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF266LQS bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF922PHV 13320118 ENCODE Processing Pipeline 44aa2dfc2a4e078b472dc989bf65560a https://www.encodeproject.org/files/ENCFF266LQS/@@download/ENCFF266LQS.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF467UYM bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF513BIR 13088742 ENCODE Processing Pipeline 7b26051de8c5d85b727d1a9dc0928bf4 https://www.encodeproject.org/files/ENCFF467UYM/@@download/ENCFF467UYM.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF723HNB bed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF001TDO, ENCFF047ZBU, ENCFF513BIR, ENCFF922PHV 351315 ENCODE Processing Pipeline e34a701ea0d14fba11bd808f5686bc43 https://www.encodeproject.org/files/ENCFF723HNB/@@download/ENCFF723HNB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF506YUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF723HNB 741298 ENCODE Processing Pipeline 2e45cf7b2c6116c0168d78788522ada2 https://www.encodeproject.org/files/ENCFF506YUZ/@@download/ENCFF506YUZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF142EVF bed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF001TDO, ENCFF047ZBU, ENCFF513BIR, ENCFF922PHV 520152 ENCODE Processing Pipeline 7d07051af43759929280cae1252a92bb https://www.encodeproject.org/files/ENCFF142EVF/@@download/ENCFF142EVF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF595EAH bigBed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF142EVF 1001221 ENCODE Processing Pipeline 8208743005eb3cbb631a9497290bf85a https://www.encodeproject.org/files/ENCFF595EAH/@@download/ENCFF595EAH.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF204AEJ bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF666ATR, ENCFF807RLO 998986030 ENCODE Processing Pipeline 562c0e186a61811001f5ea1b426caa36 https://www.encodeproject.org/files/ENCFF204AEJ/@@download/ENCFF204AEJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF406EMS bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF065CIX, ENCFF322NTO 1009816661 ENCODE Processing Pipeline ebc6547935d3e653e8b57d2660153d97 https://www.encodeproject.org/files/ENCFF406EMS/@@download/ENCFF406EMS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF822DCZ bigWig signal p-value ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF065CIX, ENCFF322NTO, ENCFF666ATR, ENCFF807RLO 1931867759 ENCODE Processing Pipeline ddbf757e4a5447be51a680f2abe4836b https://www.encodeproject.org/files/ENCFF822DCZ/@@download/ENCFF822DCZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF861JYI bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF666ATR, ENCFF807RLO 1010765495 ENCODE Processing Pipeline 45f22dc9134ce031539646364e29842a https://www.encodeproject.org/files/ENCFF861JYI/@@download/ENCFF861JYI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF624WHW bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF065CIX, ENCFF322NTO 1319147973 ENCODE Processing Pipeline e46facb54238426ba3a3ed6afac6e8a3 https://www.encodeproject.org/files/ENCFF624WHW/@@download/ENCFF624WHW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF484QFK bigWig fold change over control ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF065CIX, ENCFF322NTO, ENCFF666ATR, ENCFF807RLO 2091314690 ENCODE Processing Pipeline 01e7f3ac165db002fb25237354d616aa https://www.encodeproject.org/files/ENCFF484QFK/@@download/ENCFF484QFK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF896HNQ bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF065CIX, ENCFF322NTO 6663021 ENCODE Processing Pipeline ffc924ae6ae6a57e6cb7b41efdd2e215 https://www.encodeproject.org/files/ENCFF896HNQ/@@download/ENCFF896HNQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF692VBI bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF896HNQ 13416569 ENCODE Processing Pipeline c37ed97f6dc894409ebb8df3e7d789c3 https://www.encodeproject.org/files/ENCFF692VBI/@@download/ENCFF692VBI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF214KDB bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF065CIX, ENCFF322NTO, ENCFF666ATR, ENCFF807RLO 7228409 ENCODE Processing Pipeline 8f957b525788a28fa4bb20d0076a8139 https://www.encodeproject.org/files/ENCFF214KDB/@@download/ENCFF214KDB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF018UXZ bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF666ATR, ENCFF807RLO 6695465 ENCODE Processing Pipeline d72c6990ee5548a90aba7311fcf408f3 https://www.encodeproject.org/files/ENCFF018UXZ/@@download/ENCFF018UXZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF493NSR bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF018UXZ 13220781 ENCODE Processing Pipeline 6e49623a0763648e372ac107d67563c5 https://www.encodeproject.org/files/ENCFF493NSR/@@download/ENCFF493NSR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF993EVD bigBed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF903KEI 895238 ENCODE Processing Pipeline a5693e7f83ed67e8ffbe584dfc282cd6 https://www.encodeproject.org/files/ENCFF993EVD/@@download/ENCFF993EVD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF401NCJ bigBed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF595JHJ 597476 ENCODE Processing Pipeline fb6cd3b184a285e40f1e93102a8911a7 https://www.encodeproject.org/files/ENCFF401NCJ/@@download/ENCFF401NCJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF595JHJ bed narrowPeak conservative idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF018UXZ, ENCFF214KDB, ENCFF419RSJ, ENCFF896HNQ 273578 ENCODE Processing Pipeline 71aa933ad0087cc022a722b95f63a216 https://www.encodeproject.org/files/ENCFF595JHJ/@@download/ENCFF595JHJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF597ZXY bigBed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF214KDB 13210293 ENCODE Processing Pipeline 7733f3400f69178faf91d0686ec9f51e https://www.encodeproject.org/files/ENCFF597ZXY/@@download/ENCFF597ZXY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF903KEI bed narrowPeak optimal idr thresholded peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1, 2 ENCFF018UXZ, ENCFF214KDB, ENCFF419RSJ, ENCFF896HNQ 462798 ENCODE Processing Pipeline 31c9f8d275d0a7b221684a8233e3157e https://www.encodeproject.org/files/ENCFF903KEI/@@download/ENCFF903KEI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF949JWR fastq reads ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF585PXT 3303779694 Michael Snyder, Stanford abf301da4090c97e43a3dc32d8592939 SRA:SRR6212710 https://www.encodeproject.org/files/ENCFF949JWR/@@download/ENCFF949JWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF405NIJ fastq reads ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF836KYO 3502732199 Michael Snyder, Stanford 5e68cd13bf276a9564c8ee2f799fa33f SRA:SRR6212711 https://www.encodeproject.org/files/ENCFF405NIJ/@@download/ENCFF405NIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF836KYO fastq reads ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF405NIJ 3609077991 Michael Snyder, Stanford d90b3903d92236ac05a731e3ce245928 SRA:SRR6212711 https://www.encodeproject.org/files/ENCFF836KYO/@@download/ENCFF836KYO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF585PXT fastq reads ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF949JWR 3402316381 Michael Snyder, Stanford bea992b8a8bebd71554610b07e5da590 SRA:SRR6212710 https://www.encodeproject.org/files/ENCFF585PXT/@@download/ENCFF585PXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF095HOE bam unfiltered alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF585PXT, ENCFF807MUK, ENCFF949JWR 7025273131 ENCODE Processing Pipeline 9bd809bee3982268265319b1206d7da9 https://www.encodeproject.org/files/ENCFF095HOE/@@download/ENCFF095HOE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF351ZWF bam unfiltered alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF585PXT, ENCFF643CGH, ENCFF949JWR 7038995394 ENCODE Processing Pipeline 6f2bb18265261f9bb8719bd8c193efa1 https://www.encodeproject.org/files/ENCFF351ZWF/@@download/ENCFF351ZWF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF948JWS bam unfiltered alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF405NIJ, ENCFF807MUK, ENCFF836KYO 7421297394 ENCODE Processing Pipeline 3f68da99ab2124da553d85a28188f292 https://www.encodeproject.org/files/ENCFF948JWS/@@download/ENCFF948JWS.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF696OXV bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF585PXT, ENCFF643CGH, ENCFF949JWR 5721592131 ENCODE Processing Pipeline 45bab6b64497e8781a586bc93c894ef2 https://www.encodeproject.org/files/ENCFF696OXV/@@download/ENCFF696OXV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF598IUZ bam unfiltered alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF405NIJ, ENCFF643CGH, ENCFF836KYO 7436408667 ENCODE Processing Pipeline ed2a3da00dbd25c2171a2e15904dbd0f https://www.encodeproject.org/files/ENCFF598IUZ/@@download/ENCFF598IUZ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF185WOT bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF585PXT, ENCFF807MUK, ENCFF949JWR 5720407869 ENCODE Processing Pipeline 33ab551cb227fe3932b89fd0fbec4342 https://www.encodeproject.org/files/ENCFF185WOT/@@download/ENCFF185WOT.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF089HFZ bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF405NIJ, ENCFF807MUK, ENCFF836KYO 6035606683 ENCODE Processing Pipeline 5f8c805b8c8a76425a2bd81bbebde669 https://www.encodeproject.org/files/ENCFF089HFZ/@@download/ENCFF089HFZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF651AIL bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF405NIJ, ENCFF643CGH, ENCFF836KYO 6036690296 ENCODE Processing Pipeline 45c9e8ee72b438bb6e6e1c5eff0f5adc https://www.encodeproject.org/files/ENCFF651AIL/@@download/ENCFF651AIL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF888DRT bigWig signal p-value ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF185WOT 1369792736 ENCODE Processing Pipeline b9b7bb56f3b2de275676399828f0a940 https://www.encodeproject.org/files/ENCFF888DRT/@@download/ENCFF888DRT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF472ECE bigWig fold change over control ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF089HFZ, ENCFF185WOT 2040879842 ENCODE Processing Pipeline bdb741bd4a2487f422fba7b84b9705b2 https://www.encodeproject.org/files/ENCFF472ECE/@@download/ENCFF472ECE.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF551KZV bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF089HFZ, ENCFF185WOT 6958838 ENCODE Processing Pipeline 2e0847aa687c3c6fa2fe682b38e589c2 https://www.encodeproject.org/files/ENCFF551KZV/@@download/ENCFF551KZV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF449YRH bed narrowPeak conservative idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF051XDB, ENCFF277OHH, ENCFF551KZV 4995 ENCODE Processing Pipeline 642d5ec950f778cd95639953f4caccc3 https://www.encodeproject.org/files/ENCFF449YRH/@@download/ENCFF449YRH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF075TGZ bigWig signal p-value ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF696OXV 1438843141 ENCODE Processing Pipeline eeaa4af477050115b1c1382c09562b09 https://www.encodeproject.org/files/ENCFF075TGZ/@@download/ENCFF075TGZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF179UAP bigWig signal p-value ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF651AIL, ENCFF696OXV 1971380192 ENCODE Processing Pipeline 0cae25a2eaa9ffc7ae4742bda229fe38 https://www.encodeproject.org/files/ENCFF179UAP/@@download/ENCFF179UAP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF459HXL bigWig fold change over control ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF696OXV 1427869470 ENCODE Processing Pipeline 5ad0294658ef0c2f67e2f0dbac6cac96 https://www.encodeproject.org/files/ENCFF459HXL/@@download/ENCFF459HXL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF385ABB bigWig fold change over control ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF651AIL, ENCFF696OXV 2054398034 ENCODE Processing Pipeline 28668b2f1bfc11d13665c9d97ac409ce https://www.encodeproject.org/files/ENCFF385ABB/@@download/ENCFF385ABB.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF963EPK bigWig signal p-value ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF089HFZ 1614175213 ENCODE Processing Pipeline a13b49235a9decb4470a722fbfeb5729 https://www.encodeproject.org/files/ENCFF963EPK/@@download/ENCFF963EPK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF738QRB bigBed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF829YUK 11305732 ENCODE Processing Pipeline f217537c51d324c569d7b3cf8637c25f https://www.encodeproject.org/files/ENCFF738QRB/@@download/ENCFF738QRB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF140HRH bigBed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF202BQA 11262413 ENCODE Processing Pipeline 93fd36c656f9a8acf62f37d7cb147634 https://www.encodeproject.org/files/ENCFF140HRH/@@download/ENCFF140HRH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF526AOS bed narrowPeak optimal idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF202BQA, ENCFF321IFO, ENCFF419RSJ, ENCFF829YUK 9646 ENCODE Processing Pipeline 8cb8d4f768a9e6f40f093622b48f3688 https://www.encodeproject.org/files/ENCFF526AOS/@@download/ENCFF526AOS.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF661AGI bigBed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF051XDB 11249505 ENCODE Processing Pipeline 524415ff5685663938c412d1b1428c74 https://www.encodeproject.org/files/ENCFF661AGI/@@download/ENCFF661AGI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF723RCX bigBed narrowPeak optimal idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF526AOS 59519 ENCODE Processing Pipeline a861d2f9d38a102dca7f66fefdb4c954 https://www.encodeproject.org/files/ENCFF723RCX/@@download/ENCFF723RCX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF355JAB bigWig fold change over control ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF651AIL 1458994306 ENCODE Processing Pipeline ebaf343779a0ddc466cd7d640825b158 https://www.encodeproject.org/files/ENCFF355JAB/@@download/ENCFF355JAB.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF727BDQ bigWig signal p-value ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF651AIL 1292200035 ENCODE Processing Pipeline 60668824af59403a8a2551ccda48c33e https://www.encodeproject.org/files/ENCFF727BDQ/@@download/ENCFF727BDQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF317WMZ bigWig fold change over control ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF089HFZ 1456433859 ENCODE Processing Pipeline 16ce1a74cb43effb89a5494ca41d58eb https://www.encodeproject.org/files/ENCFF317WMZ/@@download/ENCFF317WMZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF136ZOX bigWig signal p-value ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF089HFZ, ENCFF185WOT 1969197792 ENCODE Processing Pipeline 5ae4947452934d5b73bc7f80b9ff3da8 https://www.encodeproject.org/files/ENCFF136ZOX/@@download/ENCFF136ZOX.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF129DWV bigWig fold change over control ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF185WOT 1430204521 ENCODE Processing Pipeline 0a4ca2689446136809a89a40a43eb095 https://www.encodeproject.org/files/ENCFF129DWV/@@download/ENCFF129DWV.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF202BQA bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF696OXV 5889455 ENCODE Processing Pipeline a661210d0e13572e40bcf6c3d212b7d0 https://www.encodeproject.org/files/ENCFF202BQA/@@download/ENCFF202BQA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF321IFO bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF651AIL, ENCFF696OXV 6952426 ENCODE Processing Pipeline 76a494b1152db1852927f2be9d8fc1e0 https://www.encodeproject.org/files/ENCFF321IFO/@@download/ENCFF321IFO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF522FOD bigBed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF551KZV 11366785 ENCODE Processing Pipeline ac16973f5ddfbc56c44ce80592b135d8 https://www.encodeproject.org/files/ENCFF522FOD/@@download/ENCFF522FOD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF829YUK bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF651AIL 6029200 ENCODE Processing Pipeline 5a1f4c69aa97bcd347562b9640248a16 https://www.encodeproject.org/files/ENCFF829YUK/@@download/ENCFF829YUK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF277OHH bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF089HFZ 6040187 ENCODE Processing Pipeline ed80b1ea2043885e77065f52f9de9eca https://www.encodeproject.org/files/ENCFF277OHH/@@download/ENCFF277OHH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF051XDB bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF185WOT 5893626 ENCODE Processing Pipeline 0b0362e4eda51953479803587a18ad88 https://www.encodeproject.org/files/ENCFF051XDB/@@download/ENCFF051XDB.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF700WTY bigBed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF321IFO 11384655 ENCODE Processing Pipeline 9966ee569951b6beb09ed6fb6b84b318 https://www.encodeproject.org/files/ENCFF700WTY/@@download/ENCFF700WTY.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF537EEN bed narrowPeak conservative idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF202BQA, ENCFF321IFO, ENCFF419RSJ, ENCFF829YUK 4878 ENCODE Processing Pipeline 8923a486092a2990ccc9a4abb5c08898 https://www.encodeproject.org/files/ENCFF537EEN/@@download/ENCFF537EEN.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF213GOA bigBed narrowPeak conservative idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF537EEN 59886 ENCODE Processing Pipeline 908e1bcd2d464600b89032460bafc15c https://www.encodeproject.org/files/ENCFF213GOA/@@download/ENCFF213GOA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF515DKT bigBed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF277OHH 11278891 ENCODE Processing Pipeline 776d800f04ec6d932709a68bb71b9b53 https://www.encodeproject.org/files/ENCFF515DKT/@@download/ENCFF515DKT.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF125ILK bigBed narrowPeak conservative idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF449YRH 59446 ENCODE Processing Pipeline 0628e940d0aafc8b7e170ec18bd7b319 https://www.encodeproject.org/files/ENCFF125ILK/@@download/ENCFF125ILK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF580LHX bed narrowPeak optimal idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF051XDB, ENCFF277OHH, ENCFF551KZV 10983 ENCODE Processing Pipeline 4673d15e6e9d53d4694bae5ef8a83d10 https://www.encodeproject.org/files/ENCFF580LHX/@@download/ENCFF580LHX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF978LHP bigBed narrowPeak optimal idr thresholded peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF580LHX 70541 ENCODE Processing Pipeline 49dddc33ce1024e5c2192464d9acae1e https://www.encodeproject.org/files/ENCFF978LHP/@@download/ENCFF978LHP.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF551VXN fastq reads ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 1 50 single-ended 2269348364 Richard Myers, HAIB ffa34492c2edfd688e4856a96b99e3f4 https://www.encodeproject.org/files/ENCFF551VXN/@@download/ENCFF551VXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JYK/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF296VAW fastq reads ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 1 50 single-ended 1683952014 Richard Myers, HAIB bb93c5ca4cd7d96d0e370775cd0c9562 https://www.encodeproject.org/files/ENCFF296VAW/@@download/ENCFF296VAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF337PRN bigWig signal p-value ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 1136267321 ENCODE Processing Pipeline 3383145969dd7fcb3dad2799dda3114e https://www.encodeproject.org/files/ENCFF337PRN/@@download/ENCFF337PRN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF981DGF bigWig fold change over control ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 1012012718 ENCODE Processing Pipeline 78e560260ee12db5d06d9de45ca8561d https://www.encodeproject.org/files/ENCFF981DGF/@@download/ENCFF981DGF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF119WME bam unfiltered alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF296VAW, ENCFF643CGH 1843836266 ENCODE Processing Pipeline 5b2e32e8de0605281e1bb6273a1fc90d https://www.encodeproject.org/files/ENCFF119WME/@@download/ENCFF119WME.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF681WWA bam unfiltered alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF551VXN, ENCFF643CGH 2332432114 ENCODE Processing Pipeline e66b29342091776ffb99c514952624be https://www.encodeproject.org/files/ENCFF681WWA/@@download/ENCFF681WWA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF217HIN bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF296VAW, ENCFF643CGH 1397621549 ENCODE Processing Pipeline f6055dae7d058a8562ad1d50922a8ae1 https://www.encodeproject.org/files/ENCFF217HIN/@@download/ENCFF217HIN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF073FBT bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF551VXN, ENCFF643CGH 1640610586 ENCODE Processing Pipeline c9e53522d72a3962e73c06d3e18e891a https://www.encodeproject.org/files/ENCFF073FBT/@@download/ENCFF073FBT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF210JCR bigWig signal p-value ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF217HIN, ENCFF370PSF, ENCFF406XEH 1033479819 ENCODE Processing Pipeline 589296da0c68dde2ff2ec9a0fdf9f21a https://www.encodeproject.org/files/ENCFF210JCR/@@download/ENCFF210JCR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF252WQT bigWig signal p-value ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF073FBT, ENCFF406XEH 802140907 ENCODE Processing Pipeline ec21ca2e77878b886fa56aa25a98c995 https://www.encodeproject.org/files/ENCFF252WQT/@@download/ENCFF252WQT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF526PQC bigWig fold change over control ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF073FBT, ENCFF406XEH 800198218 ENCODE Processing Pipeline f9c0481f8ec99b744e1dd3435b14828f https://www.encodeproject.org/files/ENCFF526PQC/@@download/ENCFF526PQC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF847LGV bigWig fold change over control ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF217HIN, ENCFF370PSF, ENCFF406XEH 1014420582 ENCODE Processing Pipeline 4bde4fa602498eaf42754aa9b36726a2 https://www.encodeproject.org/files/ENCFF847LGV/@@download/ENCFF847LGV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF452QOQ bigWig signal p-value ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF073FBT, ENCFF217HIN, ENCFF370PSF, ENCFF406XEH 1457292705 ENCODE Processing Pipeline 3c60558a0d036a916dda830efff7f6f4 https://www.encodeproject.org/files/ENCFF452QOQ/@@download/ENCFF452QOQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF693ZNN bigWig fold change over control ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF073FBT, ENCFF217HIN, ENCFF370PSF, ENCFF406XEH 1516658655 ENCODE Processing Pipeline e96b9ab83565ae7a96087c2990031d14 https://www.encodeproject.org/files/ENCFF693ZNN/@@download/ENCFF693ZNN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF155UYD bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF073FBT, ENCFF217HIN, ENCFF370PSF, ENCFF406XEH 7063306 ENCODE Processing Pipeline 6ebc649ff9252714435eacced04ba1e6 https://www.encodeproject.org/files/ENCFF155UYD/@@download/ENCFF155UYD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF191HFX bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF217HIN, ENCFF370PSF, ENCFF406XEH 6817676 ENCODE Processing Pipeline 500d01d8a9354caccf638325d44ccfd2 https://www.encodeproject.org/files/ENCFF191HFX/@@download/ENCFF191HFX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF598HWF bigBed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF155UYD 13384125 ENCODE Processing Pipeline bccc7ddeb8fa1fc42bf3f5925ab84d8a https://www.encodeproject.org/files/ENCFF598HWF/@@download/ENCFF598HWF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF714CVR bigBed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF191HFX 13467390 ENCODE Processing Pipeline f2c11ecc05b041ea3250f063b9270cb1 https://www.encodeproject.org/files/ENCFF714CVR/@@download/ENCFF714CVR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF297BUU bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF073FBT, ENCFF406XEH 6655125 ENCODE Processing Pipeline f23abb62579f9cadf4a0f3257b47fe48 https://www.encodeproject.org/files/ENCFF297BUU/@@download/ENCFF297BUU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF005IMC bigBed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF297BUU 13362390 ENCODE Processing Pipeline 089424394dc156803b0f15bffcfebee9 https://www.encodeproject.org/files/ENCFF005IMC/@@download/ENCFF005IMC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF433EFF bed narrowPeak optimal idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF155UYD, ENCFF191HFX, ENCFF297BUU, ENCFF419RSJ 1081979 ENCODE Processing Pipeline 844f3f0525b546d08f94e824ab2cba32 https://www.encodeproject.org/files/ENCFF433EFF/@@download/ENCFF433EFF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF881OTB bigBed narrowPeak optimal idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF433EFF 1895254 ENCODE Processing Pipeline ac0ed370e2eab162da55beb1e71df02e https://www.encodeproject.org/files/ENCFF881OTB/@@download/ENCFF881OTB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF842FFW bed narrowPeak conservative idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF155UYD, ENCFF191HFX, ENCFF297BUU, ENCFF419RSJ 974110 ENCODE Processing Pipeline 936657aa3d810b6afde830d14272a988 https://www.encodeproject.org/files/ENCFF842FFW/@@download/ENCFF842FFW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF956WZS bigBed narrowPeak conservative idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF842FFW 1742306 ENCODE Processing Pipeline 04959d5bc717d2d71cf9f73f1daa1f24 https://www.encodeproject.org/files/ENCFF956WZS/@@download/ENCFF956WZS.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF957OFG bam unfiltered alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF551VXN, ENCFF807MUK 2323482653 ENCODE Processing Pipeline 31c6108e0e4733bb08b1c206f556c824 https://www.encodeproject.org/files/ENCFF957OFG/@@download/ENCFF957OFG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF299MPV bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF551VXN, ENCFF807MUK 1640727748 ENCODE Processing Pipeline c151528ddfb22b80bf4c648cc1a9ac02 https://www.encodeproject.org/files/ENCFF299MPV/@@download/ENCFF299MPV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF458ZDH bam unfiltered alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF296VAW, ENCFF807MUK 1834414978 ENCODE Processing Pipeline c2da297bdec91a78c1d7a62a6b2da892 https://www.encodeproject.org/files/ENCFF458ZDH/@@download/ENCFF458ZDH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF571ICH bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF296VAW, ENCFF807MUK 1397573052 ENCODE Processing Pipeline 072ce7dc5795d31ae51a4a4850a3b99d https://www.encodeproject.org/files/ENCFF571ICH/@@download/ENCFF571ICH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF771SVJ bigWig signal p-value ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF299MPV, ENCFF807CUF 800294146 ENCODE Processing Pipeline 2cb10bbf94aa1d44bff28c65b29d5469 https://www.encodeproject.org/files/ENCFF771SVJ/@@download/ENCFF771SVJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF594WYE bigWig signal p-value ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF299MPV, ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 1454576064 ENCODE Processing Pipeline faf42774d923860c9f7aa3bf3cf7945b https://www.encodeproject.org/files/ENCFF594WYE/@@download/ENCFF594WYE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF902SXI bigWig fold change over control ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF299MPV, ENCFF807CUF 795893189 ENCODE Processing Pipeline 53d47b98b97db84b21ecc19db1d7a5c9 https://www.encodeproject.org/files/ENCFF902SXI/@@download/ENCFF902SXI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF672UVA bigWig fold change over control ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF299MPV, ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 1512078806 ENCODE Processing Pipeline a1328468a7651e20a1bdcae3ed85c89e https://www.encodeproject.org/files/ENCFF672UVA/@@download/ENCFF672UVA.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF571PKW bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF299MPV, ENCFF807CUF 6654694 ENCODE Processing Pipeline 4f4cba258c42983c2a149b343143af6c https://www.encodeproject.org/files/ENCFF571PKW/@@download/ENCFF571PKW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF139YFA bed narrowPeak conservative idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF001TDO, ENCFF027RDL, ENCFF084INO, ENCFF571PKW 968920 ENCODE Processing Pipeline 88d1170dbe1f81939827ad9fb3182009 https://www.encodeproject.org/files/ENCFF139YFA/@@download/ENCFF139YFA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF084INO bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 6726328 ENCODE Processing Pipeline c86c615448e702fdfffcb965bbf255d8 https://www.encodeproject.org/files/ENCFF084INO/@@download/ENCFF084INO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF017YUI bed narrowPeak optimal idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF001TDO, ENCFF027RDL, ENCFF084INO, ENCFF571PKW 1086792 ENCODE Processing Pipeline 6d927fefe02424dcffe488b1873c853e https://www.encodeproject.org/files/ENCFF017YUI/@@download/ENCFF017YUI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF226DXJ bigBed narrowPeak conservative idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF139YFA 1731086 ENCODE Processing Pipeline 4f2531c20835fca925aaba3556608376 https://www.encodeproject.org/files/ENCFF226DXJ/@@download/ENCFF226DXJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF027RDL bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF299MPV, ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 7043374 ENCODE Processing Pipeline 4e0708d4b22e437fa6ce4eb5947ba26c https://www.encodeproject.org/files/ENCFF027RDL/@@download/ENCFF027RDL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF654RGN bigBed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF084INO 13348018 ENCODE Processing Pipeline 257c3487dd61c28130dac8682d1234df https://www.encodeproject.org/files/ENCFF654RGN/@@download/ENCFF654RGN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF795KYQ bigBed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF571PKW 13356070 ENCODE Processing Pipeline c043ff5aed7f47d5cad7aaa9f730be3e https://www.encodeproject.org/files/ENCFF795KYQ/@@download/ENCFF795KYQ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF307RFF bigBed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF027RDL 13354466 ENCODE Processing Pipeline abe5fd13673fdf27d051cdb1e23589ef https://www.encodeproject.org/files/ENCFF307RFF/@@download/ENCFF307RFF.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF349CGX bigBed narrowPeak optimal idr thresholded peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF017YUI 1898251 ENCODE Processing Pipeline 81c78a021fa57ae8e4e56b785b967bba https://www.encodeproject.org/files/ENCFF349CGX/@@download/ENCFF349CGX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF000OIN bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OIW 864237160 Richard Myers, HAIB 333051d5e92fb2aaa50ec2f4a2ae8ffa https://www.encodeproject.org/files/ENCFF000OIN/@@download/ENCFF000OIN.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIO bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OIZ 969162882 Richard Myers, HAIB 0854fcc30267af44b7bcc8a46e2ea5d4 https://www.encodeproject.org/files/ENCFF000OIO/@@download/ENCFF000OIO.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIP bigBed broadPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZY 899371 Richard Myers, HAIB ce945ce719da50c390c8c435a8fdd18b https://www.encodeproject.org/files/ENCFF000OIP/@@download/ENCFF000OIP.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIQ bigBed broadPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZZ 1064105 Richard Myers, HAIB d775930c4f67c1ed42205715d06dddaa https://www.encodeproject.org/files/ENCFF000OIQ/@@download/ENCFF000OIQ.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIS bigWig raw signal ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 35845322 Richard Myers, HAIB 7ef1e44404e213c896c86d5ea8e1bba9 https://www.encodeproject.org/files/ENCFF000OIS/@@download/ENCFF000OIS.bigWig hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OIU bigWig raw signal ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 33677584 Richard Myers, HAIB 0bc5bc3657a34c75bec7d923fd8d3d48 https://www.encodeproject.org/files/ENCFF000OIU/@@download/ENCFF000OIU.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OIW fastq reads ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 891316650 Richard Myers, HAIB df865b0a0f076e0f34b0cd233537cafd https://www.encodeproject.org/files/ENCFF000OIW/@@download/ENCFF000OIW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIZ fastq reads ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1077310720 Richard Myers, HAIB 87cc4dcd0179529cfc04d1505aab268a https://www.encodeproject.org/files/ENCFF000OIZ/@@download/ENCFF000OIZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF001TZY bed broadPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 515455 Richard Myers, HAIB e77162506d0ab08fe1744e5c8714e7a0 https://www.encodeproject.org/files/ENCFF001TZY/@@download/ENCFF001TZY.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TZZ bed broadPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 529219 Richard Myers, HAIB 39376eced4553f022cc5f70aa5440ee8 https://www.encodeproject.org/files/ENCFF001TZZ/@@download/ENCFF001TZZ.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CIH bed narrowPeak optimal idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 404939 ENCODE Consortium Analysis Working Group 7b901ec2e549aabcdab6ad4450d419e4 https://www.encodeproject.org/files/ENCFF002CIH/@@download/ENCFF002CIH.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF985GDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIH 1124408 ENCODE Consortium 1271f03d1a2e3af619d47176a7ce5358 https://www.encodeproject.org/files/ENCFF985GDR/@@download/ENCFF985GDR.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF604QBL bam unfiltered alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIW, ENCFF643CGH 1117623567 ENCODE Processing Pipeline 86d8634f8f31635fb74bbcb857227c82 https://www.encodeproject.org/files/ENCFF604QBL/@@download/ENCFF604QBL.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF453WOE bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIW, ENCFF643CGH 698240258 ENCODE Processing Pipeline 1d5072342afd24285393c54dc6b5e2f0 https://www.encodeproject.org/files/ENCFF453WOE/@@download/ENCFF453WOE.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF052MCH bam unfiltered alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIZ, ENCFF643CGH 1325191957 ENCODE Processing Pipeline d4e0f8f6e8b66b46f95fed33717f8f3e https://www.encodeproject.org/files/ENCFF052MCH/@@download/ENCFF052MCH.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF653FWT bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIZ, ENCFF643CGH 753220088 ENCODE Processing Pipeline 83b1a536a728d791571667895926fa1f https://www.encodeproject.org/files/ENCFF653FWT/@@download/ENCFF653FWT.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF760QHP bam unfiltered alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIW, ENCFF807MUK 1116445094 ENCODE Processing Pipeline 96ee39132efffb373efaa907ef8fe1ab https://www.encodeproject.org/files/ENCFF760QHP/@@download/ENCFF760QHP.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF331AQC bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIW, ENCFF807MUK 692667752 ENCODE Processing Pipeline dd01f7065da72f81e96f3b1d5d66d9be https://www.encodeproject.org/files/ENCFF331AQC/@@download/ENCFF331AQC.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF388SYU bam unfiltered alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIZ, ENCFF807MUK 1323371307 ENCODE Processing Pipeline 282308e356c93b703cb764da7cad9d07 https://www.encodeproject.org/files/ENCFF388SYU/@@download/ENCFF388SYU.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF624MYA bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIZ, ENCFF807MUK 747653763 ENCODE Processing Pipeline 1e46a40e44edaedfbc7e925140aa65f6 https://www.encodeproject.org/files/ENCFF624MYA/@@download/ENCFF624MYA.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF320MZV bigWig signal p-value ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF653FWT, ENCFF857FLV 330387297 ENCODE Processing Pipeline cf0bbe3bd47eeb6dfcfbb5e1ad924917 https://www.encodeproject.org/files/ENCFF320MZV/@@download/ENCFF320MZV.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF378BNL bigWig signal p-value ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF453WOE, ENCFF857FLV 319781002 ENCODE Processing Pipeline 66bd4c58c874ef31d52a72fe731ee199 https://www.encodeproject.org/files/ENCFF378BNL/@@download/ENCFF378BNL.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF777QET bigWig fold change over control ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF653FWT, ENCFF857FLV 258040918 ENCODE Processing Pipeline 9ac96a3e6ac0fef8bc0e58d3fe497b61 https://www.encodeproject.org/files/ENCFF777QET/@@download/ENCFF777QET.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF728FEX bigWig signal p-value ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF453WOE, ENCFF653FWT, ENCFF857FLV 324299466 ENCODE Processing Pipeline edf9a46887a0ea374d88b71cfd27cb16 https://www.encodeproject.org/files/ENCFF728FEX/@@download/ENCFF728FEX.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF155DEW bigWig fold change over control ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF453WOE, ENCFF857FLV 255233556 ENCODE Processing Pipeline 1289869bcd8bb64dc3a5f7076f4c0d1f https://www.encodeproject.org/files/ENCFF155DEW/@@download/ENCFF155DEW.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF724GDC bigWig fold change over control ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF453WOE, ENCFF653FWT, ENCFF857FLV 439192137 ENCODE Processing Pipeline 28f2eacb509ef2c31780739071313956 https://www.encodeproject.org/files/ENCFF724GDC/@@download/ENCFF724GDC.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF848AAQ bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF453WOE, ENCFF857FLV 6403495 ENCODE Processing Pipeline 4d63f4aa1ed8d32bc53e394ffc90b47e https://www.encodeproject.org/files/ENCFF848AAQ/@@download/ENCFF848AAQ.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF126FHG bigBed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF848AAQ 12256886 ENCODE Processing Pipeline 3c13d8e5818169ae915b31305eb25c05 https://www.encodeproject.org/files/ENCFF126FHG/@@download/ENCFF126FHG.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF842LIC bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF653FWT, ENCFF857FLV 6214514 ENCODE Processing Pipeline cbaf84d41827ed0ffa1e4d09a52ceda3 https://www.encodeproject.org/files/ENCFF842LIC/@@download/ENCFF842LIC.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF515RFW bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF453WOE, ENCFF653FWT, ENCFF857FLV 6935755 ENCODE Processing Pipeline aa972148d9e4146828afd621f4fa5d19 https://www.encodeproject.org/files/ENCFF515RFW/@@download/ENCFF515RFW.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF473XPS bigBed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF842LIC 12260820 ENCODE Processing Pipeline b6d8239ead4d80fc86b949abf85dccdc https://www.encodeproject.org/files/ENCFF473XPS/@@download/ENCFF473XPS.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF021HUZ bed narrowPeak optimal idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF515RFW, ENCFF842LIC, ENCFF848AAQ 484674 ENCODE Processing Pipeline c14c28e95934fc2cb0892624e9940ce6 https://www.encodeproject.org/files/ENCFF021HUZ/@@download/ENCFF021HUZ.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF207DVP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF694NSV 1017822 ENCODE Processing Pipeline b85277e966984a6d821c1f9e93ed7bc0 https://www.encodeproject.org/files/ENCFF207DVP/@@download/ENCFF207DVP.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF876JMP bigBed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF515RFW 12234087 ENCODE Processing Pipeline 97cc0e0fdc8bb9b2e9e738f2a55ed9bc https://www.encodeproject.org/files/ENCFF876JMP/@@download/ENCFF876JMP.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF694NSV bed narrowPeak conservative idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF515RFW, ENCFF842LIC, ENCFF848AAQ 450523 ENCODE Processing Pipeline ad4b02720a71fb35a8bc45ce613a61ca https://www.encodeproject.org/files/ENCFF694NSV/@@download/ENCFF694NSV.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF755XIG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF021HUZ 1073021 ENCODE Processing Pipeline 46d24133240d47bfac1b9f5c10bb54be https://www.encodeproject.org/files/ENCFF755XIG/@@download/ENCFF755XIG.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF691OOX bigWig signal p-value ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF624MYA, ENCFF864ASU 331424672 ENCODE Processing Pipeline 031310922425cc6b330898ee14016d81 https://www.encodeproject.org/files/ENCFF691OOX/@@download/ENCFF691OOX.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF819BUY bigWig signal p-value ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331AQC, ENCFF624MYA, ENCFF864ASU 325422966 ENCODE Processing Pipeline 9b045c77620267efa9531664faede420 https://www.encodeproject.org/files/ENCFF819BUY/@@download/ENCFF819BUY.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF987BIP bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331AQC, ENCFF624MYA, ENCFF864ASU 6794063 ENCODE Processing Pipeline 5b1cc676716ecc96a6e2f517a44b9d95 https://www.encodeproject.org/files/ENCFF987BIP/@@download/ENCFF987BIP.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF139MVJ bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF624MYA, ENCFF864ASU 6133756 ENCODE Processing Pipeline 295a0db3bef0fe42af9d76d2a481304c https://www.encodeproject.org/files/ENCFF139MVJ/@@download/ENCFF139MVJ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF348NIY bigWig fold change over control ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF624MYA, ENCFF864ASU 257994745 ENCODE Processing Pipeline aa3ddc0c2ac57957c6ec53bd558efad1 https://www.encodeproject.org/files/ENCFF348NIY/@@download/ENCFF348NIY.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF734TAE bigWig fold change over control ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF331AQC, ENCFF864ASU 255126549 ENCODE Processing Pipeline 26d3ccb60d98cedd7ebb4ed81cbe0b08 https://www.encodeproject.org/files/ENCFF734TAE/@@download/ENCFF734TAE.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF618VPW bigBed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF139MVJ 12157245 ENCODE Processing Pipeline ad8ad2c8a9d2bc02dd0b33ccc1c86ea5 https://www.encodeproject.org/files/ENCFF618VPW/@@download/ENCFF618VPW.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF247VVX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF987KYM 957490 ENCODE Processing Pipeline 6b8417bc97db8b4b3a415950966c300d https://www.encodeproject.org/files/ENCFF247VVX/@@download/ENCFF247VVX.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF112QCZ bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF331AQC, ENCFF864ASU 6365250 ENCODE Processing Pipeline 0ac1746ce2b3d8497f81d3f3f487eed8 https://www.encodeproject.org/files/ENCFF112QCZ/@@download/ENCFF112QCZ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF987KYM bed narrowPeak conservative idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF112QCZ, ENCFF139MVJ, ENCFF987BIP 407470 ENCODE Processing Pipeline 218e82e697a30002d6ecf03b791a9473 https://www.encodeproject.org/files/ENCFF987KYM/@@download/ENCFF987KYM.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF911QJE bigWig signal p-value ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF331AQC, ENCFF864ASU 284226740 ENCODE Processing Pipeline 6e83b8d6a2620455b9f1a5f4dcaef2cb https://www.encodeproject.org/files/ENCFF911QJE/@@download/ENCFF911QJE.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF063IRW bed narrowPeak optimal idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF112QCZ, ENCFF139MVJ, ENCFF987BIP 433752 ENCODE Processing Pipeline 2b484c7fd860486a55c118b84596c304 https://www.encodeproject.org/files/ENCFF063IRW/@@download/ENCFF063IRW.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF063EOO bigWig fold change over control ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331AQC, ENCFF624MYA, ENCFF864ASU 439049786 ENCODE Processing Pipeline 076d957f9a5ed0bac3dbc49b442371d1 https://www.encodeproject.org/files/ENCFF063EOO/@@download/ENCFF063EOO.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF337XQS bigBed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112QCZ 12241871 ENCODE Processing Pipeline 806596a0b4b2481523fee554f110982a https://www.encodeproject.org/files/ENCFF337XQS/@@download/ENCFF337XQS.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF800QNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF063IRW 1000888 ENCODE Processing Pipeline 1409da90a21615f8d3634bc47317eb32 https://www.encodeproject.org/files/ENCFF800QNZ/@@download/ENCFF800QNZ.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF184FDW bigBed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF987BIP 12046370 ENCODE Processing Pipeline d271dda9bfee77b36dd01d1ac64f7c36 https://www.encodeproject.org/files/ENCFF184FDW/@@download/ENCFF184FDW.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF019BTC fastq reads ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF894LNI 2653501496 Michael Snyder, Stanford afab3d940a8c6ac390e4b91a6525bbab SRA:SRR6214043 https://www.encodeproject.org/files/ENCFF019BTC/@@download/ENCFF019BTC.fastq.gz Illumina HiSeq 4000 /files/ENCFF473QSO/ released antibody characterized with exemption ENCFF894LNI fastq reads ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF019BTC 2305266486 Michael Snyder, Stanford 269c1ed982526d75a4c38b8c55c4a64d SRA:SRR6214043 https://www.encodeproject.org/files/ENCFF894LNI/@@download/ENCFF894LNI.fastq.gz Illumina HiSeq 4000 /files/ENCFF135ANM/ released antibody characterized with exemption ENCFF719JME bam unfiltered alignments ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF019BTC, ENCFF643CGH, ENCFF894LNI 4876490750 ENCODE Processing Pipeline 513bfad14485209398ecb900c7b14441 https://www.encodeproject.org/files/ENCFF719JME/@@download/ENCFF719JME.bam GRCh38 released antibody characterized with exemption ENCFF244WQG bam alignments ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF019BTC, ENCFF643CGH, ENCFF894LNI 3980625370 ENCODE Processing Pipeline 79e294a4fc81d802252b7b3f42ddd906 https://www.encodeproject.org/files/ENCFF244WQG/@@download/ENCFF244WQG.bam GRCh38 released antibody characterized with exemption ENCFF029GAR bam alignments ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF019BTC, ENCFF807MUK, ENCFF894LNI 3974806693 ENCODE Processing Pipeline 8e68c0db87d9e99361baa6626cf0fbf5 https://www.encodeproject.org/files/ENCFF029GAR/@@download/ENCFF029GAR.bam hg19 released antibody characterized with exemption ENCFF756ORJ bam unfiltered alignments ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF019BTC, ENCFF807MUK, ENCFF894LNI 4868767949 ENCODE Processing Pipeline 62f91a048b18de1fbc9910419c1baf4e https://www.encodeproject.org/files/ENCFF756ORJ/@@download/ENCFF756ORJ.bam hg19 released antibody characterized with exemption ENCFF308EHS bigWig signal p-value ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF029GAR, ENCFF977RET 1417710374 ENCODE Processing Pipeline 5ca855865b2ff7784bf5d90bf4cead70 https://www.encodeproject.org/files/ENCFF308EHS/@@download/ENCFF308EHS.bigWig hg19 released antibody characterized with exemption ENCFF321VDV bed narrowPeak peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF029GAR, ENCFF977RET 5720154 ENCODE Processing Pipeline d3957fa60bb67b5c06ddf25c0b272aa2 https://www.encodeproject.org/files/ENCFF321VDV/@@download/ENCFF321VDV.bed.gz hg19 released antibody characterized with exemption ENCFF034SBQ bigWig fold change over control ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF029GAR, ENCFF977RET 1362715880 ENCODE Processing Pipeline 06fdb90a45c4b1ce1dbbe4b5d63a34fe https://www.encodeproject.org/files/ENCFF034SBQ/@@download/ENCFF034SBQ.bigWig hg19 released antibody characterized with exemption ENCFF153VTR bigWig signal p-value ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF157IHW, ENCFF244WQG 1425854650 ENCODE Processing Pipeline 7a9421e377ff75fb95f28778ef733f42 https://www.encodeproject.org/files/ENCFF153VTR/@@download/ENCFF153VTR.bigWig GRCh38 released antibody characterized with exemption ENCFF637KHE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF321VDV 108502 ENCODE Processing Pipeline c091cf1d820ce19040a60a2c1ed8c2f7 https://www.encodeproject.org/files/ENCFF637KHE/@@download/ENCFF637KHE.bed.gz hg19 released antibody characterized with exemption ENCFF519ZTA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF637KHE 218589 ENCODE Processing Pipeline f67a847f3ad6da783e741f85040916a7 https://www.encodeproject.org/files/ENCFF519ZTA/@@download/ENCFF519ZTA.bigBed hg19 released antibody characterized with exemption ENCFF038YXS bigWig fold change over control ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF157IHW, ENCFF244WQG 1345958047 ENCODE Processing Pipeline 0c18daa992c7d2f3d82f6921898ac225 https://www.encodeproject.org/files/ENCFF038YXS/@@download/ENCFF038YXS.bigWig GRCh38 released antibody characterized with exemption ENCFF349YQZ bigBed narrowPeak peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF321VDV 11568752 ENCODE Processing Pipeline 9e0af30f6a46e5d8af9d8449f5449d83 https://www.encodeproject.org/files/ENCFF349YQZ/@@download/ENCFF349YQZ.bigBed hg19 released antibody characterized with exemption ENCFF142RFJ bigBed narrowPeak peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF031PBW 11586455 ENCODE Processing Pipeline c9ad98e2c6db253dd6aa370e5fcffe8f https://www.encodeproject.org/files/ENCFF142RFJ/@@download/ENCFF142RFJ.bigBed GRCh38 released antibody characterized with exemption ENCFF031PBW bed narrowPeak peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF157IHW, ENCFF244WQG 5719345 ENCODE Processing Pipeline 13f18131ea02868a3cef608eaa08ed3c https://www.encodeproject.org/files/ENCFF031PBW/@@download/ENCFF031PBW.bed.gz GRCh38 released antibody characterized with exemption ENCFF907DYF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF290BOD 217686 ENCODE Processing Pipeline ab56d57ef245b0735427e8350a360a1a https://www.encodeproject.org/files/ENCFF907DYF/@@download/ENCFF907DYF.bigBed GRCh38 released antibody characterized with exemption ENCFF290BOD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF031PBW, ENCFF419RSJ 105773 ENCODE Processing Pipeline ce37bb7d406971a56f9f8cbf0539a072 https://www.encodeproject.org/files/ENCFF290BOD/@@download/ENCFF290BOD.bed.gz GRCh38 released antibody characterized with exemption ENCFF000XMI bam alignments ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XML 644370635 Peggy Farnham, USC 10d68944ee6cccd3033daae46608d3fc https://www.encodeproject.org/files/ENCFF000XMI/@@download/ENCFF000XMI.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XMJ bam alignments ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XMN 741044494 Peggy Farnham, USC 954b892485ed7cf90309f84b09a34d03 https://www.encodeproject.org/files/ENCFF000XMJ/@@download/ENCFF000XMJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XMK bigBed narrowPeak peaks ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VJM 2050255 Peggy Farnham, USC 7c76315ebada5b6841c8fd8ac19cfc3c https://www.encodeproject.org/files/ENCFF000XMK/@@download/ENCFF000XMK.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XML fastq reads ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1162998373 Peggy Farnham, USC 65521707c989a8f227ed9d44d1360a82 https://www.encodeproject.org/files/ENCFF000XML/@@download/ENCFF000XML.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGR/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XMN fastq reads ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1542419406 Peggy Farnham, USC 6f362182bb65c5ba8e81025f0259394c https://www.encodeproject.org/files/ENCFF000XMN/@@download/ENCFF000XMN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGR/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XMP bigWig signal ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 482479811 Peggy Farnham, USC d6f029710727c9f2fcc80c96c55f5757 https://www.encodeproject.org/files/ENCFF000XMP/@@download/ENCFF000XMP.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001VJM bed narrowPeak peaks ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 782079 Peggy Farnham, USC f40a11e2ddd58a36781a358ee4a1cf3f https://www.encodeproject.org/files/ENCFF001VJM/@@download/ENCFF001VJM.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CTK bed narrowPeak optimal idr thresholded peaks ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 437958 ENCODE Consortium Analysis Working Group b6b4a4d0d1cbe37588a4d53cf3d70440 https://www.encodeproject.org/files/ENCFF002CTK/@@download/ENCFF002CTK.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF477OEY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CTK 1025398 ENCODE Consortium 2e1693b580af24f5970e1496f641dc37 https://www.encodeproject.org/files/ENCFF477OEY/@@download/ENCFF477OEY.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF663CEY fastq reads ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF913NPA 1684871674 Richard Myers, HAIB c2afbb60563033be96b4593e92526fe2 SRA:SRR6214395 https://www.encodeproject.org/files/ENCFF663CEY/@@download/ENCFF663CEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF846FCW/ released antibody characterized with exemption missing control alignments ENCFF913NPA fastq reads ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF663CEY 1711729540 Richard Myers, HAIB 92cf04a7fa25ebac42ed4e7e193d184d SRA:SRR6214395 https://www.encodeproject.org/files/ENCFF913NPA/@@download/ENCFF913NPA.fastq.gz Illumina HiSeq 2000 /files/ENCFF908NQG/ released antibody characterized with exemption missing control alignments ENCFF502VMV bam alignments ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF663CEY, ENCFF807MUK, ENCFF913NPA 3262396096 ENCODE Processing Pipeline c4a801151deae364344436f93b29a805 https://www.encodeproject.org/files/ENCFF502VMV/@@download/ENCFF502VMV.bam hg19 released antibody characterized with exemption missing control alignments ENCFF137GRY bam unfiltered alignments ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF663CEY, ENCFF807MUK, ENCFF913NPA 4198375068 ENCODE Processing Pipeline b52806a1b5aa9c029e6875c0df7acebb https://www.encodeproject.org/files/ENCFF137GRY/@@download/ENCFF137GRY.bam hg19 released antibody characterized with exemption missing control alignments ENCFF300ZIE bam unfiltered alignments ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF663CEY, ENCFF913NPA 4216382802 ENCODE Processing Pipeline ebd26b37f3e96506f4984494a400ca14 https://www.encodeproject.org/files/ENCFF300ZIE/@@download/ENCFF300ZIE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF840PIA bam alignments ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF663CEY, ENCFF913NPA 3263792119 ENCODE Processing Pipeline 61148116a4c6c67c98a9424a84deb3c7 https://www.encodeproject.org/files/ENCFF840PIA/@@download/ENCFF840PIA.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF823TXL bigWig signal p-value ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF840PIA 1315973647 ENCODE Processing Pipeline bce038d702fb8769ec0bd34f06e064cd https://www.encodeproject.org/files/ENCFF823TXL/@@download/ENCFF823TXL.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF078WGV bigWig fold change over control ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF840PIA 1218285039 ENCODE Processing Pipeline 65c35b1a3ec21e4ff4de39137486c13c https://www.encodeproject.org/files/ENCFF078WGV/@@download/ENCFF078WGV.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF432EAC bed narrowPeak peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF840PIA 5710908 ENCODE Processing Pipeline 8fe1105e4e3ed31806886cad3132f062 https://www.encodeproject.org/files/ENCFF432EAC/@@download/ENCFF432EAC.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF637WYM bigBed narrowPeak peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF432EAC 11818079 ENCODE Processing Pipeline 13925dbde7cb2498788edecb38063833 https://www.encodeproject.org/files/ENCFF637WYM/@@download/ENCFF637WYM.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF015BDX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF081YBG 100409 ENCODE Processing Pipeline 5bbb35a5a88fc64d77e8322417bf9fad https://www.encodeproject.org/files/ENCFF015BDX/@@download/ENCFF015BDX.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF081YBG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF432EAC 23699 ENCODE Processing Pipeline 3241a6616523f74ab8b7e3b89da0cff3 https://www.encodeproject.org/files/ENCFF081YBG/@@download/ENCFF081YBG.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF118YWP bigWig signal p-value ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502VMV 1171645927 ENCODE Processing Pipeline a2bab111836aa33be0039e8ce0a5f187 https://www.encodeproject.org/files/ENCFF118YWP/@@download/ENCFF118YWP.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF662PQB bigBed narrowPeak peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF305OFV 11800597 ENCODE Processing Pipeline d9be75c4062e286c6e46c46fab7fb9eb https://www.encodeproject.org/files/ENCFF662PQB/@@download/ENCFF662PQB.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF539NOL bigWig fold change over control ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502VMV 1217668924 ENCODE Processing Pipeline 5b9db66a08c1e4850fc0d652115efeed https://www.encodeproject.org/files/ENCFF539NOL/@@download/ENCFF539NOL.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF305OFV bed narrowPeak peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502VMV 5707914 ENCODE Processing Pipeline 3977eb99d78fe78ea670cee7e4a9bd35 https://www.encodeproject.org/files/ENCFF305OFV/@@download/ENCFF305OFV.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF451VDG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF305OFV 24272 ENCODE Processing Pipeline 8be354c4831004be35200c1c4c4c610e https://www.encodeproject.org/files/ENCFF451VDG/@@download/ENCFF451VDG.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF812WHU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF451VDG 100510 ENCODE Processing Pipeline 3fa66c582d563ecabb69edeb6a48d89b https://www.encodeproject.org/files/ENCFF812WHU/@@download/ENCFF812WHU.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF421XZN fastq reads ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 1 ENCFF319OJB 4423913604 Michael Snyder, Stanford a50ca42a03d9774c5c4d9d7ec8fd0d40 SRA:SRR6213024 https://www.encodeproject.org/files/ENCFF421XZN/@@download/ENCFF421XZN.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF319OJB fastq reads ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 2 ENCFF421XZN 5405824345 Michael Snyder, Stanford 1d9fc2742c928f14fe01f04f3a2f2061 SRA:SRR6213024 https://www.encodeproject.org/files/ENCFF319OJB/@@download/ENCFF319OJB.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF197WID fastq reads ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 1 ENCFF845UON 4019151456 Michael Snyder, Stanford 719c2f82dfb4f01275aa7da0f5933f61 SRA:SRR6213025 https://www.encodeproject.org/files/ENCFF197WID/@@download/ENCFF197WID.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF845UON fastq reads ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 2 ENCFF197WID 4953755934 Michael Snyder, Stanford 22d4c58b79ca4544366b245761f478b5 SRA:SRR6213025 https://www.encodeproject.org/files/ENCFF845UON/@@download/ENCFF845UON.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF462GOV bam unfiltered alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF197WID, ENCFF807MUK, ENCFF845UON 8716240707 ENCODE Processing Pipeline 3ee2fd27b75bd75a97a54f0f74ea9fd4 https://www.encodeproject.org/files/ENCFF462GOV/@@download/ENCFF462GOV.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF843YKM bam unfiltered alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF319OJB, ENCFF421XZN, ENCFF643CGH 9424910720 ENCODE Processing Pipeline 01a294fb49d6a8f0c7f79f67b80db7be https://www.encodeproject.org/files/ENCFF843YKM/@@download/ENCFF843YKM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF128YYC bam unfiltered alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF197WID, ENCFF643CGH, ENCFF845UON 8732242012 ENCODE Processing Pipeline 49bb64c9f3ecf07e0e7a76b3602f1e2a https://www.encodeproject.org/files/ENCFF128YYC/@@download/ENCFF128YYC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF189YEJ bam unfiltered alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF319OJB, ENCFF421XZN, ENCFF807MUK 9408720898 ENCODE Processing Pipeline f0334c8a5ea5da245daffe6966a5f580 https://www.encodeproject.org/files/ENCFF189YEJ/@@download/ENCFF189YEJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF622REF bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF319OJB, ENCFF421XZN, ENCFF643CGH 7529338858 ENCODE Processing Pipeline 9f7759884f419621c0fc2d35d0ed0081 https://www.encodeproject.org/files/ENCFF622REF/@@download/ENCFF622REF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF503PLN bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF319OJB, ENCFF421XZN, ENCFF807MUK 7523346762 ENCODE Processing Pipeline 371d798136b9392aaf8f333589eaa89d https://www.encodeproject.org/files/ENCFF503PLN/@@download/ENCFF503PLN.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF911WFF bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF197WID, ENCFF643CGH, ENCFF845UON 6970961364 ENCODE Processing Pipeline 3c50f671c78f3fdecd420916704b1d27 https://www.encodeproject.org/files/ENCFF911WFF/@@download/ENCFF911WFF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF664QKK bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF197WID, ENCFF807MUK, ENCFF845UON 6965057128 ENCODE Processing Pipeline a53e9e9d81796dd9165453ddf5217231 https://www.encodeproject.org/files/ENCFF664QKK/@@download/ENCFF664QKK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF638NZH bigWig signal p-value ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF810LLR, ENCFF911WFF 2006821347 ENCODE Processing Pipeline 840c0c528a05f2f26731c9d64d396f1d https://www.encodeproject.org/files/ENCFF638NZH/@@download/ENCFF638NZH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF544YQP bigWig signal p-value ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF664QKK 1995251651 ENCODE Processing Pipeline bb39eee82f24c797cfab18a2a5c77181 https://www.encodeproject.org/files/ENCFF544YQP/@@download/ENCFF544YQP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF957NLL bigWig signal p-value ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF182WHU, ENCFF503PLN, ENCFF664QKK 1912805156 ENCODE Processing Pipeline 10e2ae6c949cf13deaba904aaf1d36cc https://www.encodeproject.org/files/ENCFF957NLL/@@download/ENCFF957NLL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF746BGM bigWig signal p-value ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF622REF, ENCFF810LLR 1986989794 ENCODE Processing Pipeline e051870f414ae6ec232adc4577461a37 https://www.encodeproject.org/files/ENCFF746BGM/@@download/ENCFF746BGM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF342LOY bigWig signal p-value ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF503PLN 1984431285 ENCODE Processing Pipeline 8ff55521959f84cacf248bf2c92679f4 https://www.encodeproject.org/files/ENCFF342LOY/@@download/ENCFF342LOY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF962MRT bigWig signal p-value ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF622REF, ENCFF810LLR, ENCFF911WFF 1923719690 ENCODE Processing Pipeline c89ea2f616b4c05efeb87e3fa7b280ea https://www.encodeproject.org/files/ENCFF962MRT/@@download/ENCFF962MRT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF473JUW bigWig fold change over control ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF664QKK 2005916342 ENCODE Processing Pipeline fdcdd866951500905422cdbcf81f93be https://www.encodeproject.org/files/ENCFF473JUW/@@download/ENCFF473JUW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF084CPJ bigWig fold change over control ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF810LLR, ENCFF911WFF 2024302367 ENCODE Processing Pipeline fbcbb88436ba7732675e2faaf2c9ce06 https://www.encodeproject.org/files/ENCFF084CPJ/@@download/ENCFF084CPJ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF496HDV bigWig fold change over control ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF622REF, ENCFF810LLR 2107980177 ENCODE Processing Pipeline 6cd6b71e436fef78242171b7512a6835 https://www.encodeproject.org/files/ENCFF496HDV/@@download/ENCFF496HDV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF214QAS bigWig fold change over control ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF503PLN 2104510054 ENCODE Processing Pipeline f0257a8577afb36e939da54193196450 https://www.encodeproject.org/files/ENCFF214QAS/@@download/ENCFF214QAS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF072HSO bigWig fold change over control ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF182WHU, ENCFF503PLN, ENCFF664QKK 2818680328 ENCODE Processing Pipeline 804e9a17dffc405a630623c8e0ae262a https://www.encodeproject.org/files/ENCFF072HSO/@@download/ENCFF072HSO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF120LKN bigWig fold change over control ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF622REF, ENCFF810LLR, ENCFF911WFF 2833267166 ENCODE Processing Pipeline 7ae3566944894f100361b1071c1e8678 https://www.encodeproject.org/files/ENCFF120LKN/@@download/ENCFF120LKN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF774VDD bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF664QKK 7180544 ENCODE Processing Pipeline b64eb46b2a288c6a4004a54de41eacc1 https://www.encodeproject.org/files/ENCFF774VDD/@@download/ENCFF774VDD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF619RLD bigBed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF774VDD 11227810 ENCODE Processing Pipeline cf6c9b97c97801dd9caeaea821284beb https://www.encodeproject.org/files/ENCFF619RLD/@@download/ENCFF619RLD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF716FMU bigBed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF557WXE 11116326 ENCODE Processing Pipeline 0efe2232dfc715d412fe0c2d5b1b25d9 https://www.encodeproject.org/files/ENCFF716FMU/@@download/ENCFF716FMU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF286QYI bigBed narrowPeak optimal idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF338OGQ 135243 ENCODE Processing Pipeline 026be45e429238e7012bf70e8b93f194 https://www.encodeproject.org/files/ENCFF286QYI/@@download/ENCFF286QYI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF095YBC bigBed narrowPeak optimal idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF836LWG 140557 ENCODE Processing Pipeline 75f0f5ea7203d8d2b93f366b8b35d211 https://www.encodeproject.org/files/ENCFF095YBC/@@download/ENCFF095YBC.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF748BUO bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF810LLR, ENCFF911WFF 7187831 ENCODE Processing Pipeline 6a457480f77dd0ea8c2d2747ed4e26e4 https://www.encodeproject.org/files/ENCFF748BUO/@@download/ENCFF748BUO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF782DOI bed narrowPeak conservative idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF422SSN, ENCFF557WXE, ENCFF748BUO 36960 ENCODE Processing Pipeline 43702d149e24f2d8dd7235b221f71701 https://www.encodeproject.org/files/ENCFF782DOI/@@download/ENCFF782DOI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF338OGQ bed narrowPeak optimal idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF180UKE, ENCFF377VYF, ENCFF774VDD 54740 ENCODE Processing Pipeline fde3912471885b2814b6788fd0258ba1 https://www.encodeproject.org/files/ENCFF338OGQ/@@download/ENCFF338OGQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF180UKE bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF503PLN 7201268 ENCODE Processing Pipeline a8b66427d6943a5ae87ab9ca94e1a154 https://www.encodeproject.org/files/ENCFF180UKE/@@download/ENCFF180UKE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF422SSN bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF622REF, ENCFF810LLR, ENCFF911WFF 7315808 ENCODE Processing Pipeline 62cb86c2fba2fe634ba1105bf081a569 https://www.encodeproject.org/files/ENCFF422SSN/@@download/ENCFF422SSN.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF557WXE bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF622REF, ENCFF810LLR 7206781 ENCODE Processing Pipeline e63dad84a4bcbe0564e7c60c2bfce78e https://www.encodeproject.org/files/ENCFF557WXE/@@download/ENCFF557WXE.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF377VYF bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF182WHU, ENCFF503PLN, ENCFF664QKK 7307649 ENCODE Processing Pipeline d1cfb95e33aaf73295d7b360b62e1a5f https://www.encodeproject.org/files/ENCFF377VYF/@@download/ENCFF377VYF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF424RAG bigBed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF748BUO 11246429 ENCODE Processing Pipeline ef322579c44f2413600860e7bd206be8 https://www.encodeproject.org/files/ENCFF424RAG/@@download/ENCFF424RAG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF836LWG bed narrowPeak optimal idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF422SSN, ENCFF557WXE, ENCFF748BUO 57099 ENCODE Processing Pipeline 73b92bdef0e03b91c0ef58f12e96cc66 https://www.encodeproject.org/files/ENCFF836LWG/@@download/ENCFF836LWG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF783PKT bigBed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF377VYF 11112924 ENCODE Processing Pipeline 509e175d7afd7596191356f62263e1ff https://www.encodeproject.org/files/ENCFF783PKT/@@download/ENCFF783PKT.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF456HPK bigBed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF180UKE 11104451 ENCODE Processing Pipeline a4e105f21f15495fe33fa9d2d7955843 https://www.encodeproject.org/files/ENCFF456HPK/@@download/ENCFF456HPK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF085OUJ bed narrowPeak conservative idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF180UKE, ENCFF377VYF, ENCFF774VDD 36391 ENCODE Processing Pipeline 6693cc30fe2d152d9e527ccc242dc38c https://www.encodeproject.org/files/ENCFF085OUJ/@@download/ENCFF085OUJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF965OOQ bigBed narrowPeak conservative idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF085OUJ 110107 ENCODE Processing Pipeline 3fecf845cc15a87cf1438e28491ec019 https://www.encodeproject.org/files/ENCFF965OOQ/@@download/ENCFF965OOQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF574UWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF782DOI 112558 ENCODE Processing Pipeline 1f3fddb065485889648d63b5ec7e2507 https://www.encodeproject.org/files/ENCFF574UWJ/@@download/ENCFF574UWJ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF412MWG bigBed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF422SSN 11127683 ENCODE Processing Pipeline 61effd9eef6adf130ceff345e4e73b1e https://www.encodeproject.org/files/ENCFF412MWG/@@download/ENCFF412MWG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF000RIT bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RJG 1127089770 Richard Myers, HAIB f5010fd5fc3b66172ec9293e20d3b05c https://www.encodeproject.org/files/ENCFF000RIT/@@download/ENCFF000RIT.bam hg19 archived low read depth biological replicates with identical biosample ENCFF000RIU bigBed broadPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001URN 161229 Richard Myers, HAIB 93420a864dc791f1374762e750c293df https://www.encodeproject.org/files/ENCFF000RIU/@@download/ENCFF000RIU.bigBed hg19 archived low read depth biological replicates with identical biosample ENCFF000RIV bigBed broadPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001URO 147817 Richard Myers, HAIB 1eef5d07824e4b1f9095021372a1c46d https://www.encodeproject.org/files/ENCFF000RIV/@@download/ENCFF000RIV.bigBed hg19 archived low read depth biological replicates with identical biosample ENCFF000RIW bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RJM 1746272649 Richard Myers, HAIB 1f6d2d84a9cb254fb89429b25f5eae0b https://www.encodeproject.org/files/ENCFF000RIW/@@download/ENCFF000RIW.bam hg19 archived low read depth biological replicates with identical biosample ENCFF000RIZ bigWig raw signal ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 127938232 Richard Myers, HAIB 47fc495e82892e06278682301fee950a https://www.encodeproject.org/files/ENCFF000RIZ/@@download/ENCFF000RIZ.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF000RJA bigWig raw signal ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 244193851 Richard Myers, HAIB bdb63a914b353073a8b7cc57c12098d8 https://www.encodeproject.org/files/ENCFF000RJA/@@download/ENCFF000RJA.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF000RJG fastq reads ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1124276847 Richard Myers, HAIB 397275e62e8c75e4ed955cb25468bc05 https://www.encodeproject.org/files/ENCFF000RJG/@@download/ENCFF000RJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RJY/ released low read depth biological replicates with identical biosample ENCFF000RJM fastq reads ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1758957253 Richard Myers, HAIB d4c2d0f4d4738eda84a6d02c32305b4d https://www.encodeproject.org/files/ENCFF000RJM/@@download/ENCFF000RJM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RJY/ released low read depth biological replicates with identical biosample ENCFF001URN bed broadPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 70734 Richard Myers, HAIB 45e1460fb11fd3d917ae28267ec32dd4 https://www.encodeproject.org/files/ENCFF001URN/@@download/ENCFF001URN.bed.gz hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF001URO bed broadPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 62439 Richard Myers, HAIB a507f30809b7e1ef6f188bfa5e32c6f3 https://www.encodeproject.org/files/ENCFF001URO/@@download/ENCFF001URO.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from ENCFF794NQC bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000RJG, ENCFF643CGH 939515617 ENCODE Processing Pipeline 766f63f42f17fe494c797d49f12baf4a https://www.encodeproject.org/files/ENCFF794NQC/@@download/ENCFF794NQC.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF421GCC bam unfiltered alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000RJM, ENCFF643CGH 1889286821 ENCODE Processing Pipeline 92cba5e6b8c7b9cd2aa77cdc08535e2e https://www.encodeproject.org/files/ENCFF421GCC/@@download/ENCFF421GCC.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF356EIA bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000RJG, ENCFF807MUK 939738927 ENCODE Processing Pipeline 3f3db672195fe98601775adda769d24d https://www.encodeproject.org/files/ENCFF356EIA/@@download/ENCFF356EIA.bam hg19 released low read depth biological replicates with identical biosample ENCFF151THN bam unfiltered alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000RJG, ENCFF643CGH 1218660862 ENCODE Processing Pipeline 64dbc1efe9d2accbadbf3ba3132e58a7 https://www.encodeproject.org/files/ENCFF151THN/@@download/ENCFF151THN.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF742ZML bam unfiltered alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000RJM, ENCFF807MUK 1881311731 ENCODE Processing Pipeline bd1b8b1343bebc26aa01b095dea9dbc7 https://www.encodeproject.org/files/ENCFF742ZML/@@download/ENCFF742ZML.bam hg19 released low read depth biological replicates with identical biosample ENCFF113BIW bam unfiltered alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000RJG, ENCFF807MUK 1214441395 ENCODE Processing Pipeline 232c3135e2e66c8497953a1b928171cb https://www.encodeproject.org/files/ENCFF113BIW/@@download/ENCFF113BIW.bam hg19 released low read depth biological replicates with identical biosample ENCFF596HMK bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000RJM, ENCFF807MUK 1446527077 ENCODE Processing Pipeline 9a41adcfc61fa936fcd1f557de5a1986 https://www.encodeproject.org/files/ENCFF596HMK/@@download/ENCFF596HMK.bam hg19 released low read depth biological replicates with identical biosample ENCFF511JPZ bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000RJM, ENCFF643CGH 1446556281 ENCODE Processing Pipeline 87d5de2b557d3294015343a66c4f6932 https://www.encodeproject.org/files/ENCFF511JPZ/@@download/ENCFF511JPZ.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF900WNY bigWig signal p-value ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF356EIA, ENCFF370NFJ 521822648 ENCODE Processing Pipeline 42fcb4b3d74078dfb0027aedf4f6bf57 https://www.encodeproject.org/files/ENCFF900WNY/@@download/ENCFF900WNY.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF664URQ bigWig signal p-value ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF370NFJ, ENCFF596HMK 602506392 ENCODE Processing Pipeline b31f72ba6cef845a10f4d5727d152288 https://www.encodeproject.org/files/ENCFF664URQ/@@download/ENCFF664URQ.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF289KHP bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF356EIA, ENCFF370NFJ 5301930 ENCODE Processing Pipeline 54692f54484dbc45dd5b24f97827cf46 https://www.encodeproject.org/files/ENCFF289KHP/@@download/ENCFF289KHP.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF311RHP bigBed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF289KHP 10989860 ENCODE Processing Pipeline 93f65624767b227df839a671101f3ef2 https://www.encodeproject.org/files/ENCFF311RHP/@@download/ENCFF311RHP.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF370VUY bigBed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF772MXQ 10948358 ENCODE Processing Pipeline f83df330afe7b9b42f0425d3e7f835b6 https://www.encodeproject.org/files/ENCFF370VUY/@@download/ENCFF370VUY.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF849QQY bigWig fold change over control ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF356EIA, ENCFF370NFJ 483766141 ENCODE Processing Pipeline 55efcf197467ed73a7024006b27f35e1 https://www.encodeproject.org/files/ENCFF849QQY/@@download/ENCFF849QQY.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF559XYD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF222ANT 287161 ENCODE Processing Pipeline 9ba9954fc1a387a9e989d10a63f2aaed https://www.encodeproject.org/files/ENCFF559XYD/@@download/ENCFF559XYD.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF274TYW bed narrowPeak optimal idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF242EJE, ENCFF289KHP, ENCFF772MXQ 164639 ENCODE Processing Pipeline a0226d35a19d707f0c8598c8549dc61d https://www.encodeproject.org/files/ENCFF274TYW/@@download/ENCFF274TYW.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF441QXC bigWig signal p-value ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF356EIA, ENCFF370NFJ, ENCFF596HMK 931683610 ENCODE Processing Pipeline b754dc427101d21020c768a1ab152044 https://www.encodeproject.org/files/ENCFF441QXC/@@download/ENCFF441QXC.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF408HVX bigWig fold change over control ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF370NFJ, ENCFF596HMK 613004944 ENCODE Processing Pipeline 64985ccc0e79292de7ab239b82524b02 https://www.encodeproject.org/files/ENCFF408HVX/@@download/ENCFF408HVX.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF772MXQ bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF370NFJ, ENCFF596HMK 5174309 ENCODE Processing Pipeline f31d5c2f414ed1d0e8227375ba4456a0 https://www.encodeproject.org/files/ENCFF772MXQ/@@download/ENCFF772MXQ.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF242EJE bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF356EIA, ENCFF370NFJ, ENCFF596HMK 5929848 ENCODE Processing Pipeline 0e5a0f72147a98ce868e4b9e5da62682 https://www.encodeproject.org/files/ENCFF242EJE/@@download/ENCFF242EJE.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF667DBD bigBed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF242EJE 11165344 ENCODE Processing Pipeline 1e30152b063d37de7c3b08a58544b8e7 https://www.encodeproject.org/files/ENCFF667DBD/@@download/ENCFF667DBD.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF222ANT bed narrowPeak conservative idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF242EJE, ENCFF289KHP, ENCFF772MXQ 124710 ENCODE Processing Pipeline 12441bfe86a843084384dc10b6535417 https://www.encodeproject.org/files/ENCFF222ANT/@@download/ENCFF222ANT.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF215AGB bigWig fold change over control ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF356EIA, ENCFF370NFJ, ENCFF596HMK 925369351 ENCODE Processing Pipeline 42f5d68228453c812c8cec0ce8958ce4 https://www.encodeproject.org/files/ENCFF215AGB/@@download/ENCFF215AGB.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF005KIN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF274TYW 347839 ENCODE Processing Pipeline b1013ca73fceee11763b45bd49c5ab1e https://www.encodeproject.org/files/ENCFF005KIN/@@download/ENCFF005KIN.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF193WJC bigWig signal p-value ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF719KPR, ENCFF794NQC 608782309 ENCODE Processing Pipeline c43f9d085d09164eb9413c25cdf9e75d https://www.encodeproject.org/files/ENCFF193WJC/@@download/ENCFF193WJC.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF114OBJ bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF719KPR, ENCFF794NQC 5176273 ENCODE Processing Pipeline f5cf466fcada3cf7eebe513acb613718 https://www.encodeproject.org/files/ENCFF114OBJ/@@download/ENCFF114OBJ.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF723KWI bigBed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF114OBJ 11006196 ENCODE Processing Pipeline 9960511398faec4ed1f196012bfd69be https://www.encodeproject.org/files/ENCFF723KWI/@@download/ENCFF723KWI.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF189GNX bigWig signal p-value ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF511JPZ, ENCFF719KPR, ENCFF794NQC 906093068 ENCODE Processing Pipeline 23b61970f09459490262a99a498afb94 https://www.encodeproject.org/files/ENCFF189GNX/@@download/ENCFF189GNX.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF407QCB bigWig fold change over control ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF511JPZ, ENCFF719KPR 646331440 ENCODE Processing Pipeline 1402c69fea09dea87384124d5a658071 https://www.encodeproject.org/files/ENCFF407QCB/@@download/ENCFF407QCB.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF809ANI bigBed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF059RDK 10954142 ENCODE Processing Pipeline f46bd39a82d04ec7440df7933cb9c872 https://www.encodeproject.org/files/ENCFF809ANI/@@download/ENCFF809ANI.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF050GFU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF946YUA 347677 ENCODE Processing Pipeline 6c6dc5d2cabd9b38ee6216bd450f9d48 https://www.encodeproject.org/files/ENCFF050GFU/@@download/ENCFF050GFU.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF970LMA bigWig fold change over control ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF511JPZ, ENCFF719KPR, ENCFF794NQC 898315868 ENCODE Processing Pipeline aad808f35e8342b64455cf14c2b52bc5 https://www.encodeproject.org/files/ENCFF970LMA/@@download/ENCFF970LMA.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF059RDK bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF511JPZ, ENCFF719KPR 5170914 ENCODE Processing Pipeline 8aef7b05a7c7cc15aba063c06e54be6e https://www.encodeproject.org/files/ENCFF059RDK/@@download/ENCFF059RDK.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF019OJA bigBed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF718MNT 11184199 ENCODE Processing Pipeline 344d483cb1a8671801817eaa1b20988f https://www.encodeproject.org/files/ENCFF019OJA/@@download/ENCFF019OJA.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF779GBG bigWig signal p-value ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF511JPZ, ENCFF719KPR 666090381 ENCODE Processing Pipeline d199f8085745a5c608c377a6a58c9017 https://www.encodeproject.org/files/ENCFF779GBG/@@download/ENCFF779GBG.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF816VPW bigWig fold change over control ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF719KPR, ENCFF794NQC 481736949 ENCODE Processing Pipeline abe43dbc1f607b5d82c74be139a2f735 https://www.encodeproject.org/files/ENCFF816VPW/@@download/ENCFF816VPW.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF946YUA bed narrowPeak optimal idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF059RDK, ENCFF114OBJ, ENCFF419RSJ, ENCFF718MNT 163757 ENCODE Processing Pipeline ac4ce4b0b1281b95b0fde6bfa6a1daf1 https://www.encodeproject.org/files/ENCFF946YUA/@@download/ENCFF946YUA.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF081YPW bed narrowPeak conservative idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF059RDK, ENCFF114OBJ, ENCFF419RSJ, ENCFF718MNT 127872 ENCODE Processing Pipeline 34b257ca95f180fd0d59f0a995aab91c https://www.encodeproject.org/files/ENCFF081YPW/@@download/ENCFF081YPW.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF718MNT bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF511JPZ, ENCFF719KPR, ENCFF794NQC 5914796 ENCODE Processing Pipeline 8607367ac20ff406663fc967b16e5c7c https://www.encodeproject.org/files/ENCFF718MNT/@@download/ENCFF718MNT.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF789XPH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF081YPW 293488 ENCODE Processing Pipeline e69a52b16d30af55238c208cb1482e24 https://www.encodeproject.org/files/ENCFF789XPH/@@download/ENCFF789XPH.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF435TOG fastq reads ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1494953897 Richard Myers, HAIB 79de8cdd48748c4ecdc4674de263dda0 SRA:SRR5338912 https://www.encodeproject.org/files/ENCFF435TOG/@@download/ENCFF435TOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF366KUG fastq reads ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1173947745 Richard Myers, HAIB b7c21d795409589cfa7b66fd55603469 SRA:SRR5338913 https://www.encodeproject.org/files/ENCFF366KUG/@@download/ENCFF366KUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JYK/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF927UXE bigWig signal p-value ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF807CUF, ENCFF924XUU 684444938 ENCODE Processing Pipeline 93acf3678d0dcf91874d3f5d4707403f https://www.encodeproject.org/files/ENCFF927UXE/@@download/ENCFF927UXE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF475HAH bigWig fold change over control ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF807CUF, ENCFF924XUU 442139111 ENCODE Processing Pipeline bdd6ca33bd436b85ef92dfa6f6240e32 https://www.encodeproject.org/files/ENCFF475HAH/@@download/ENCFF475HAH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF417XGQ bam unfiltered alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF435TOG, ENCFF643CGH 1531373682 ENCODE Processing Pipeline a9f55ef5365d6a165b71d40abf2895b2 https://www.encodeproject.org/files/ENCFF417XGQ/@@download/ENCFF417XGQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF172NQP bam unfiltered alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF366KUG, ENCFF643CGH 1179823949 ENCODE Processing Pipeline d6a4da2abca30b1a928a7244cabd59be https://www.encodeproject.org/files/ENCFF172NQP/@@download/ENCFF172NQP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF058OZQ bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF366KUG, ENCFF643CGH 841836651 ENCODE Processing Pipeline ac34dce2e14b2e0341af40eaa185af01 https://www.encodeproject.org/files/ENCFF058OZQ/@@download/ENCFF058OZQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF658AIS bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF435TOG, ENCFF643CGH 1101997075 ENCODE Processing Pipeline fddae2efea2e038c6232cad24b341a3a https://www.encodeproject.org/files/ENCFF658AIS/@@download/ENCFF658AIS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF309PIL bigWig signal p-value ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF658AIS 615903256 ENCODE Processing Pipeline 60de38315df3b3cf99ef324e47937095 https://www.encodeproject.org/files/ENCFF309PIL/@@download/ENCFF309PIL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF893AYJ bigWig signal p-value ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF058OZQ, ENCFF406XEH 642931257 ENCODE Processing Pipeline 1b055acd1dac968e7465a3d7b523891e https://www.encodeproject.org/files/ENCFF893AYJ/@@download/ENCFF893AYJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF770KHN bigWig fold change over control ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF658AIS 609995950 ENCODE Processing Pipeline 075c2aef00211799b3c1a0a01407672b https://www.encodeproject.org/files/ENCFF770KHN/@@download/ENCFF770KHN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF179EEK bigWig signal p-value ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF058OZQ, ENCFF370PSF, ENCFF406XEH, ENCFF658AIS 1051019986 ENCODE Processing Pipeline 32e726568b3500a46694a851305d7f07 https://www.encodeproject.org/files/ENCFF179EEK/@@download/ENCFF179EEK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF838TLG bigWig fold change over control ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF058OZQ, ENCFF406XEH 440295925 ENCODE Processing Pipeline b4a14d3e3d91c07b5d17775c29a75eb7 https://www.encodeproject.org/files/ENCFF838TLG/@@download/ENCFF838TLG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF352PXN bigWig fold change over control ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF058OZQ, ENCFF370PSF, ENCFF406XEH, ENCFF658AIS 1107416513 ENCODE Processing Pipeline f37048dfaa31d496ca0f81800a3bcc80 https://www.encodeproject.org/files/ENCFF352PXN/@@download/ENCFF352PXN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF673VPE bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF058OZQ, ENCFF406XEH 5728991 ENCODE Processing Pipeline ebe930090b603b626707ecd427f48877 https://www.encodeproject.org/files/ENCFF673VPE/@@download/ENCFF673VPE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF477KMO bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF658AIS 6477123 ENCODE Processing Pipeline abbc39dec14038a5d6d4209798bd9a24 https://www.encodeproject.org/files/ENCFF477KMO/@@download/ENCFF477KMO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF745QWG bigBed narrowPeak optimal idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF837QHJ 2112506 ENCODE Processing Pipeline 10af06479488f276787cc286b49b2458 https://www.encodeproject.org/files/ENCFF745QWG/@@download/ENCFF745QWG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF957IBE bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF058OZQ, ENCFF370PSF, ENCFF406XEH, ENCFF658AIS 6698355 ENCODE Processing Pipeline 7ef5a49cfee88a6b124c262bb6f733f3 https://www.encodeproject.org/files/ENCFF957IBE/@@download/ENCFF957IBE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF068ZIQ bigBed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF673VPE 13424227 ENCODE Processing Pipeline 474052edb5dfb2da5c9e96deea144997 https://www.encodeproject.org/files/ENCFF068ZIQ/@@download/ENCFF068ZIQ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF639EJK bed narrowPeak conservative idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF477KMO, ENCFF673VPE, ENCFF957IBE 1156238 ENCODE Processing Pipeline 4f06adea29026bd0d20de6c890745220 https://www.encodeproject.org/files/ENCFF639EJK/@@download/ENCFF639EJK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF837QHJ bed narrowPeak optimal idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF477KMO, ENCFF673VPE, ENCFF957IBE 1167325 ENCODE Processing Pipeline 88e740cf796432bbac51385b15ea8d76 https://www.encodeproject.org/files/ENCFF837QHJ/@@download/ENCFF837QHJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF472OXH bigBed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF477KMO 13455959 ENCODE Processing Pipeline 1e450c855f212113765f6b38173a6bca https://www.encodeproject.org/files/ENCFF472OXH/@@download/ENCFF472OXH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF646VSL bigBed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF957IBE 13600748 ENCODE Processing Pipeline 9370c3462558706169fdb9e5e70148cc https://www.encodeproject.org/files/ENCFF646VSL/@@download/ENCFF646VSL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF095RAG bigBed narrowPeak conservative idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF639EJK 2094004 ENCODE Processing Pipeline 497ae5ea4aafda3a2575462c01168c9b https://www.encodeproject.org/files/ENCFF095RAG/@@download/ENCFF095RAG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF518GRP bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF435TOG, ENCFF807MUK 1102293383 ENCODE Processing Pipeline 559578d3ae13356a5089e75b5dd1ff9d https://www.encodeproject.org/files/ENCFF518GRP/@@download/ENCFF518GRP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF574JJN bam unfiltered alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF366KUG, ENCFF807MUK 1176805469 ENCODE Processing Pipeline 6714938d9141424a6028ae4c635f3f12 https://www.encodeproject.org/files/ENCFF574JJN/@@download/ENCFF574JJN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF924XUU bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF366KUG, ENCFF807MUK 842128068 ENCODE Processing Pipeline cd9304a964fcf6e83c804ea0d476e4c4 https://www.encodeproject.org/files/ENCFF924XUU/@@download/ENCFF924XUU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF869BCE bam unfiltered alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF435TOG, ENCFF807MUK 1525805761 ENCODE Processing Pipeline b9dcdb1d5a1675417a4f2ea76742dea3 https://www.encodeproject.org/files/ENCFF869BCE/@@download/ENCFF869BCE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF028IJX bigWig signal p-value ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF518GRP, ENCFF991UTU 626579985 ENCODE Processing Pipeline c10bef98327be844ec1160daa0982299 https://www.encodeproject.org/files/ENCFF028IJX/@@download/ENCFF028IJX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF374OPD bigWig signal p-value ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF518GRP, ENCFF807CUF, ENCFF924XUU, ENCFF991UTU 1269892538 ENCODE Processing Pipeline 973e1cfcc2fd3ec8272d6e09b3d308f9 https://www.encodeproject.org/files/ENCFF374OPD/@@download/ENCFF374OPD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF618OVE bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF518GRP, ENCFF807CUF, ENCFF924XUU, ENCFF991UTU 6698758 ENCODE Processing Pipeline 18c1e407dcfbbe6b7e5b747a0dd75d3c https://www.encodeproject.org/files/ENCFF618OVE/@@download/ENCFF618OVE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF901DDA bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF518GRP, ENCFF991UTU 6321436 ENCODE Processing Pipeline 226a375cdfc7012ccf666775f92149d7 https://www.encodeproject.org/files/ENCFF901DDA/@@download/ENCFF901DDA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF798EUL bigBed narrowPeak conservative idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF562IOY 2091794 ENCODE Processing Pipeline a4e46ab7ce904c98d7267c4b896b7520 https://www.encodeproject.org/files/ENCFF798EUL/@@download/ENCFF798EUL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF352XJS bigWig fold change over control ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF518GRP, ENCFF991UTU 609900271 ENCODE Processing Pipeline 4dd10880a3762c6dab3d8d09600f472e https://www.encodeproject.org/files/ENCFF352XJS/@@download/ENCFF352XJS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF229IAR bigWig fold change over control ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF518GRP, ENCFF807CUF, ENCFF924XUU, ENCFF991UTU 1094907588 ENCODE Processing Pipeline d6b03c24e0e32b7b3cd2c07e076d7864 https://www.encodeproject.org/files/ENCFF229IAR/@@download/ENCFF229IAR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF088ETE bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF807CUF, ENCFF924XUU 5730112 ENCODE Processing Pipeline 69f10978867227b1778fdc35f1339bfd https://www.encodeproject.org/files/ENCFF088ETE/@@download/ENCFF088ETE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF565HEZ bigBed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF901DDA 13264286 ENCODE Processing Pipeline 3e5e0d438728474de5ea4b88c3778808 https://www.encodeproject.org/files/ENCFF565HEZ/@@download/ENCFF565HEZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF524OMS bigBed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF618OVE 13597260 ENCODE Processing Pipeline 77768c3398c973c463b5d93f1e0569ad https://www.encodeproject.org/files/ENCFF524OMS/@@download/ENCFF524OMS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF201MOM bed narrowPeak optimal idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF088ETE, ENCFF618OVE, ENCFF901DDA 1163150 ENCODE Processing Pipeline a2e668e5d2b1eee01a1e10e713d8b6b6 https://www.encodeproject.org/files/ENCFF201MOM/@@download/ENCFF201MOM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF723BBU bigBed narrowPeak optimal idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF201MOM 2105727 ENCODE Processing Pipeline 74c88eaba3b4767dc8424ad6b45ade4a https://www.encodeproject.org/files/ENCFF723BBU/@@download/ENCFF723BBU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF370VQE bigBed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF088ETE 13418869 ENCODE Processing Pipeline 743fc2c5562cbcb546da8bd55ec7855e https://www.encodeproject.org/files/ENCFF370VQE/@@download/ENCFF370VQE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF562IOY bed narrowPeak conservative idr thresholded peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF088ETE, ENCFF618OVE, ENCFF901DDA 1155630 ENCODE Processing Pipeline 09ce4a47a5d702a4d3aaee66fa1d5942 https://www.encodeproject.org/files/ENCFF562IOY/@@download/ENCFF562IOY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF000QUY bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QVH 92931263 Richard Myers, HAIB 9fb67e1e033d9e4dd5c778e20093ffb0 https://www.encodeproject.org/files/ENCFF000QUY/@@download/ENCFF000QUY.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000QUZ bigBed broadPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UOP 1220391 Richard Myers, HAIB 9084e58468d75bc3cd5e1491dc81d564 https://www.encodeproject.org/files/ENCFF000QUZ/@@download/ENCFF000QUZ.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000QVA bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QVL 136353977 Richard Myers, HAIB 0e5fdce14f1a5d5b78058aa67ca05922 https://www.encodeproject.org/files/ENCFF000QVA/@@download/ENCFF000QVA.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000QVB bigBed broadPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UOQ 557926 Richard Myers, HAIB 881d8d2ff7e10b13a274a9f06dc0216e https://www.encodeproject.org/files/ENCFF000QVB/@@download/ENCFF000QVB.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000QVD bigWig raw signal ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 47395006 Richard Myers, HAIB f9ece9d7d2125422c45659c6299669f3 https://www.encodeproject.org/files/ENCFF000QVD/@@download/ENCFF000QVD.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000QVF bigWig raw signal ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 25021664 Richard Myers, HAIB 612758fd59adfc4d0a6541cb1f473784 https://www.encodeproject.org/files/ENCFF000QVF/@@download/ENCFF000QVF.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000QVH fastq reads ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 868882886 Richard Myers, HAIB ffbe5d4bdcd239aa546d27934ea0ec43 https://www.encodeproject.org/files/ENCFF000QVH/@@download/ENCFF000QVH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QVY/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000QVL fastq reads ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1146513051 Richard Myers, HAIB 6462366a2d4b0292a3d35e98b310c988 https://www.encodeproject.org/files/ENCFF000QVL/@@download/ENCFF000QVL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QVY/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001UOP bed broadPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 612884 Richard Myers, HAIB 449f4b3e7528b6554c5a8b025086df82 https://www.encodeproject.org/files/ENCFF001UOP/@@download/ENCFF001UOP.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001UOQ bed broadPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 299462 Richard Myers, HAIB 40c7c3fc8710fd30ec8629fd3fdb3514 https://www.encodeproject.org/files/ENCFF001UOQ/@@download/ENCFF001UOQ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF032VMC bam unfiltered alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVH, ENCFF643CGH 1096838853 ENCODE Processing Pipeline 9018453f418d2800990d41cf892ca4d0 https://www.encodeproject.org/files/ENCFF032VMC/@@download/ENCFF032VMC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF494RSA bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVH, ENCFF643CGH 653576806 ENCODE Processing Pipeline f2cb94a9f27e7eec4db483a57efd0643 https://www.encodeproject.org/files/ENCFF494RSA/@@download/ENCFF494RSA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF860ZYU bam unfiltered alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVL, ENCFF643CGH 1164954746 ENCODE Processing Pipeline 460858301fa6b1e138b3ec95ea565c8e https://www.encodeproject.org/files/ENCFF860ZYU/@@download/ENCFF860ZYU.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF832DKY bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVL, ENCFF643CGH 543248639 ENCODE Processing Pipeline b7d8e73dfda4bda772afaa768492795c https://www.encodeproject.org/files/ENCFF832DKY/@@download/ENCFF832DKY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF484QIQ bam unfiltered alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVL, ENCFF807MUK 1162768980 ENCODE Processing Pipeline 3fe59dd664be7dfe45f4019d9761f589 https://www.encodeproject.org/files/ENCFF484QIQ/@@download/ENCFF484QIQ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF264WMS bam unfiltered alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVH, ENCFF807MUK 1095859646 ENCODE Processing Pipeline 4a403099f23dec23c2a9d2ba9a64b55d https://www.encodeproject.org/files/ENCFF264WMS/@@download/ENCFF264WMS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF020MRS bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVL, ENCFF807MUK 543743786 ENCODE Processing Pipeline 31a256e4eed32c79ae9a30e245fb7140 https://www.encodeproject.org/files/ENCFF020MRS/@@download/ENCFF020MRS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF441SQQ bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVH, ENCFF807MUK 654225187 ENCODE Processing Pipeline 08dff2f41f210bfe945533fb0a9cbd59 https://www.encodeproject.org/files/ENCFF441SQQ/@@download/ENCFF441SQQ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF164JXM bigWig fold change over control ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421EKC, ENCFF832DKY 237815994 ENCODE Processing Pipeline 52518e2afa5ce32aee5619da313bf28c https://www.encodeproject.org/files/ENCFF164JXM/@@download/ENCFF164JXM.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF785YQI bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF421EKC, ENCFF494RSA, ENCFF832DKY 6802071 ENCODE Processing Pipeline 9e988aee6e115991c72a5ba4549f7b20 https://www.encodeproject.org/files/ENCFF785YQI/@@download/ENCFF785YQI.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF467NHL bigWig signal p-value ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF421EKC, ENCFF494RSA 326227298 ENCODE Processing Pipeline 0afc5103255e80425d1d05f11010d686 https://www.encodeproject.org/files/ENCFF467NHL/@@download/ENCFF467NHL.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF175DMT bigWig signal p-value ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421EKC, ENCFF832DKY 268647024 ENCODE Processing Pipeline 101bf575c387f330d8977867f5ea711a https://www.encodeproject.org/files/ENCFF175DMT/@@download/ENCFF175DMT.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF007PNW bed narrowPeak conservative idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF003VGG, ENCFF109VVN, ENCFF419RSJ, ENCFF785YQI 375156 ENCODE Processing Pipeline 3291564ed0d3caaa7d115114aa4e20aa https://www.encodeproject.org/files/ENCFF007PNW/@@download/ENCFF007PNW.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF238OET bigWig fold change over control ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF421EKC, ENCFF494RSA, ENCFF832DKY 432700640 ENCODE Processing Pipeline c5ba8b7848d1814e4902592adc69e38c https://www.encodeproject.org/files/ENCFF238OET/@@download/ENCFF238OET.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF056ROO bigBed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF003VGG 12016923 ENCODE Processing Pipeline 79892fbda1cac348e9d9f545f32f6c81 https://www.encodeproject.org/files/ENCFF056ROO/@@download/ENCFF056ROO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF331ZMN bigBed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF785YQI 12044539 ENCODE Processing Pipeline e57629491d1772f58ff39c889e513536 https://www.encodeproject.org/files/ENCFF331ZMN/@@download/ENCFF331ZMN.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF071RRH bigWig signal p-value ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF421EKC, ENCFF494RSA, ENCFF832DKY 311385723 ENCODE Processing Pipeline b08fb0b70754e3780b35163837d5445d https://www.encodeproject.org/files/ENCFF071RRH/@@download/ENCFF071RRH.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF333SWB bigWig fold change over control ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF421EKC, ENCFF494RSA 267840711 ENCODE Processing Pipeline d0b35779a902c256142cc4ef71902e69 https://www.encodeproject.org/files/ENCFF333SWB/@@download/ENCFF333SWB.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF109VVN bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421EKC, ENCFF832DKY 6107471 ENCODE Processing Pipeline fc07bc023fbc91f150b3e8fdf648e82c https://www.encodeproject.org/files/ENCFF109VVN/@@download/ENCFF109VVN.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF026DBK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF007PNW 921157 ENCODE Processing Pipeline 4ce72b82ce29a980f5d40fa650d6183a https://www.encodeproject.org/files/ENCFF026DBK/@@download/ENCFF026DBK.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF349NLR bed narrowPeak optimal idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF003VGG, ENCFF109VVN, ENCFF419RSJ, ENCFF785YQI 430442 ENCODE Processing Pipeline 7c4ac3b05b5d2b962a47fd396efc09f7 https://www.encodeproject.org/files/ENCFF349NLR/@@download/ENCFF349NLR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF003VGG bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF421EKC, ENCFF494RSA 6133064 ENCODE Processing Pipeline cc9b68d920d81b4c01a4d87e8f8aba18 https://www.encodeproject.org/files/ENCFF003VGG/@@download/ENCFF003VGG.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF401RZN bigBed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF109VVN 12154148 ENCODE Processing Pipeline d023ed2e177cbc915a73175a414e3eb1 https://www.encodeproject.org/files/ENCFF401RZN/@@download/ENCFF401RZN.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF086GZX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF349NLR 1025061 ENCODE Processing Pipeline 24aae4911b7380b1205f6533b6f0de32 https://www.encodeproject.org/files/ENCFF086GZX/@@download/ENCFF086GZX.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF711MMG bigWig signal p-value ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF020MRS, ENCFF041XFO 319270209 ENCODE Processing Pipeline f11c220a1afa5fa6aa4822f50cc1d520 https://www.encodeproject.org/files/ENCFF711MMG/@@download/ENCFF711MMG.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF529HJK bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF020MRS, ENCFF041XFO, ENCFF441SQQ 6867475 ENCODE Processing Pipeline a20d028260756ea978a8e7e0bb7c8190 https://www.encodeproject.org/files/ENCFF529HJK/@@download/ENCFF529HJK.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF767AKC bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF020MRS, ENCFF041XFO 6128691 ENCODE Processing Pipeline 067f275317e354aa6c0420eb3787ad0f https://www.encodeproject.org/files/ENCFF767AKC/@@download/ENCFF767AKC.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF277LNI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF505FYP 930237 ENCODE Processing Pipeline 3a555ad3f3ab287e575ac60165612829 https://www.encodeproject.org/files/ENCFF277LNI/@@download/ENCFF277LNI.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF995HPP bigWig fold change over control ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF020MRS, ENCFF041XFO 244563711 ENCODE Processing Pipeline 04f21464c68eddcf59ee881ed937fdeb https://www.encodeproject.org/files/ENCFF995HPP/@@download/ENCFF995HPP.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF121FGJ bigWig fold change over control ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF020MRS, ENCFF041XFO, ENCFF441SQQ 434115282 ENCODE Processing Pipeline 5b91d28624a7aa9015355ad8306146ae https://www.encodeproject.org/files/ENCFF121FGJ/@@download/ENCFF121FGJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF943JKE bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF441SQQ 6134340 ENCODE Processing Pipeline 17e242d7d8d74798c7378895af2c4e9b https://www.encodeproject.org/files/ENCFF943JKE/@@download/ENCFF943JKE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF052ZXU bigBed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF943JKE 12015513 ENCODE Processing Pipeline 4f5f52f2642cd366b913d5aa6fc7c30d https://www.encodeproject.org/files/ENCFF052ZXU/@@download/ENCFF052ZXU.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF830JCH bigWig signal p-value ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF441SQQ 326161755 ENCODE Processing Pipeline bf03151b34cf590b9453ecb7b2dca573 https://www.encodeproject.org/files/ENCFF830JCH/@@download/ENCFF830JCH.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF046IAT bigBed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF767AKC 12157823 ENCODE Processing Pipeline b1a3eb220edf711377b8837019c56dd3 https://www.encodeproject.org/files/ENCFF046IAT/@@download/ENCFF046IAT.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF505FYP bed narrowPeak conservative idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF529HJK, ENCFF767AKC, ENCFF943JKE 381166 ENCODE Processing Pipeline af3fbc95358642730d6795494d6b7ab6 https://www.encodeproject.org/files/ENCFF505FYP/@@download/ENCFF505FYP.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF346PST bed narrowPeak optimal idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF529HJK, ENCFF767AKC, ENCFF943JKE 431342 ENCODE Processing Pipeline c721bcdf22396821f56c61f2f987d9d5 https://www.encodeproject.org/files/ENCFF346PST/@@download/ENCFF346PST.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF007MAV bigWig fold change over control ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF441SQQ 266125311 ENCODE Processing Pipeline f5ace9a87e96020674a6983dfeb7ecdb https://www.encodeproject.org/files/ENCFF007MAV/@@download/ENCFF007MAV.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF675RRY bigWig signal p-value ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF020MRS, ENCFF041XFO, ENCFF441SQQ 311633037 ENCODE Processing Pipeline 6b6c52fef71312c51f79d69c4a856f8c https://www.encodeproject.org/files/ENCFF675RRY/@@download/ENCFF675RRY.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF391BKV bigBed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF529HJK 12118734 ENCODE Processing Pipeline 81dd64adc1e2004bbc9241839366ff32 https://www.encodeproject.org/files/ENCFF391BKV/@@download/ENCFF391BKV.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF624TCW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF346PST 1028044 ENCODE Processing Pipeline 20dc1878927a5db9315e1e0950b5ff8d https://www.encodeproject.org/files/ENCFF624TCW/@@download/ENCFF624TCW.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF678KER fastq reads ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF547VRG 1696720508 Richard Myers, HAIB 0bc19577a9ad60f0ac25118aab2dbcf1 SRA:SRR6212852 https://www.encodeproject.org/files/ENCFF678KER/@@download/ENCFF678KER.fastq.gz Illumina HiSeq 2000 /files/ENCFF048DAV/ released antibody characterized with exemption missing control alignments ENCFF547VRG fastq reads ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF678KER 1620131135 Richard Myers, HAIB 4bfbbde7b69d49c0aad1d48b2f62cb6a SRA:SRR6212852 https://www.encodeproject.org/files/ENCFF547VRG/@@download/ENCFF547VRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF991XBB/ released antibody characterized with exemption missing control alignments ENCFF151WOC bam unfiltered alignments ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF547VRG, ENCFF678KER, ENCFF807MUK 4103418714 ENCODE Processing Pipeline 1354bd2473b1f93af70da10ed20d5a30 https://www.encodeproject.org/files/ENCFF151WOC/@@download/ENCFF151WOC.bam hg19 released antibody characterized with exemption missing control alignments ENCFF782VOH bam alignments ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF547VRG, ENCFF678KER, ENCFF807MUK 3111117233 ENCODE Processing Pipeline d5cc05767e6d26f1d5e5413d2125c305 https://www.encodeproject.org/files/ENCFF782VOH/@@download/ENCFF782VOH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF516AQU bam unfiltered alignments ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF547VRG, ENCFF643CGH, ENCFF678KER 4123337126 ENCODE Processing Pipeline dd10aa740ef302d318020a29886fc385 https://www.encodeproject.org/files/ENCFF516AQU/@@download/ENCFF516AQU.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF310SVP bam alignments ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF547VRG, ENCFF643CGH, ENCFF678KER 3113530448 ENCODE Processing Pipeline 0c01063061505fd381a997688d75c357 https://www.encodeproject.org/files/ENCFF310SVP/@@download/ENCFF310SVP.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF143FVV bigWig signal p-value ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF310SVP 1236479084 ENCODE Processing Pipeline 2837fb26d789f7fe8461857ead1a37f6 https://www.encodeproject.org/files/ENCFF143FVV/@@download/ENCFF143FVV.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF507KPJ bed narrowPeak peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF310SVP 5703475 ENCODE Processing Pipeline 2dd6ea3dfa7e8d1b462f33fe3ba7144e https://www.encodeproject.org/files/ENCFF507KPJ/@@download/ENCFF507KPJ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF763AVY bigWig fold change over control ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF310SVP 1222792912 ENCODE Processing Pipeline aa9fc79d27b51e266788df8708f3cd91 https://www.encodeproject.org/files/ENCFF763AVY/@@download/ENCFF763AVY.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF970XBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF507KPJ 12931 ENCODE Processing Pipeline d77624d592eb661316310014014ec27f https://www.encodeproject.org/files/ENCFF970XBE/@@download/ENCFF970XBE.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF631SGR bigBed narrowPeak peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF507KPJ 11891380 ENCODE Processing Pipeline eb00a98c68b4f02f94a6c5c120a0acc1 https://www.encodeproject.org/files/ENCFF631SGR/@@download/ENCFF631SGR.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF918EUW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF970XBE 83586 ENCODE Processing Pipeline e4c468d43b911d2448f82c12d556e36d https://www.encodeproject.org/files/ENCFF918EUW/@@download/ENCFF918EUW.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF187OOO bigWig signal p-value ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF782VOH 1279907208 ENCODE Processing Pipeline e84c571eeb312d7b070a7a43075f6216 https://www.encodeproject.org/files/ENCFF187OOO/@@download/ENCFF187OOO.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF745RJC bigWig fold change over control ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF782VOH 1220329409 ENCODE Processing Pipeline 1f32b7838760b9b79d9f06584a6db21d https://www.encodeproject.org/files/ENCFF745RJC/@@download/ENCFF745RJC.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF484FFT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF057IJK 81899 ENCODE Processing Pipeline d5ec79e8378fc5275f5b424f739659d9 https://www.encodeproject.org/files/ENCFF484FFT/@@download/ENCFF484FFT.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF057IJK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF987RLN 12710 ENCODE Processing Pipeline 773e062c56e8c8bdf46fe8ac6483d89e https://www.encodeproject.org/files/ENCFF057IJK/@@download/ENCFF057IJK.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF448NZR bigBed narrowPeak peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF987RLN 11871858 ENCODE Processing Pipeline bcbc4fa5ced890e80ca735185b8d6aa3 https://www.encodeproject.org/files/ENCFF448NZR/@@download/ENCFF448NZR.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF987RLN bed narrowPeak peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF782VOH 5702107 ENCODE Processing Pipeline 1d3bf3a05b1216602a3795be6f6f0e85 https://www.encodeproject.org/files/ENCFF987RLN/@@download/ENCFF987RLN.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF052AWV fastq reads ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 1 50 single-ended 935492794 Richard Myers, HAIB 7dc44546904bb1d426211553ad0a92f4 https://www.encodeproject.org/files/ENCFF052AWV/@@download/ENCFF052AWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JYK/ released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF399FVC fastq reads ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 1 50 single-ended 760221951 Richard Myers, HAIB 49268dc25e3d3cbce009cbf11aa3be81 https://www.encodeproject.org/files/ENCFF399FVC/@@download/ENCFF399FVC.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF351BHZ bigWig signal p-value ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF682QIZ, ENCFF991UTU 503155687 ENCODE Processing Pipeline 43df9f108c9a02fb6d98b818bbc2fc51 https://www.encodeproject.org/files/ENCFF351BHZ/@@download/ENCFF351BHZ.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF190HTH bigWig fold change over control ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF297FMS, ENCFF807CUF 429643242 ENCODE Processing Pipeline c6a1b1d536658f0dfd2f91f6be580a48 https://www.encodeproject.org/files/ENCFF190HTH/@@download/ENCFF190HTH.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF219LID bigWig signal p-value ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF297FMS, ENCFF807CUF 563859834 ENCODE Processing Pipeline f2361d4356dce75466159f5020e91092 https://www.encodeproject.org/files/ENCFF219LID/@@download/ENCFF219LID.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF247ALE bigWig fold change over control ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF682QIZ, ENCFF991UTU 421903774 ENCODE Processing Pipeline 5a718facc5c39bbafa41a63114720d97 https://www.encodeproject.org/files/ENCFF247ALE/@@download/ENCFF247ALE.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF245HGW bam unfiltered alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF399FVC, ENCFF643CGH 868022603 ENCODE Processing Pipeline efe0db0d24cc5d687b274b6d3927e8a6 https://www.encodeproject.org/files/ENCFF245HGW/@@download/ENCFF245HGW.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF291RIP bam unfiltered alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF052AWV, ENCFF643CGH 1009129101 ENCODE Processing Pipeline 83cefdabce8b03b628734c52ab0664e1 https://www.encodeproject.org/files/ENCFF291RIP/@@download/ENCFF291RIP.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF960VKL bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF399FVC, ENCFF643CGH 664078365 ENCODE Processing Pipeline 4cdb2322ee7e05bd293428a1506edbf7 https://www.encodeproject.org/files/ENCFF960VKL/@@download/ENCFF960VKL.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF439AQO bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF052AWV, ENCFF643CGH 739909683 ENCODE Processing Pipeline b17edd5cf639ebb8ec06c5b8199cbfa2 https://www.encodeproject.org/files/ENCFF439AQO/@@download/ENCFF439AQO.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF678JJM bigWig signal p-value ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF370PSF, ENCFF960VKL 469257613 ENCODE Processing Pipeline 8a15b9a5111218a23ea79ca65e78be2a https://www.encodeproject.org/files/ENCFF678JJM/@@download/ENCFF678JJM.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF316UZU bigWig signal p-value ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF406XEH, ENCFF439AQO 527805947 ENCODE Processing Pipeline 829d04746af9340bfd3c6ef829f5fab8 https://www.encodeproject.org/files/ENCFF316UZU/@@download/ENCFF316UZU.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF331GEL bigWig signal p-value ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF370PSF, ENCFF406XEH, ENCFF439AQO, ENCFF960VKL 1030832052 ENCODE Processing Pipeline ad97788f5c2e7ca230b7f0bef6cee89d https://www.encodeproject.org/files/ENCFF331GEL/@@download/ENCFF331GEL.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF033QLF bigWig fold change over control ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF406XEH, ENCFF439AQO 421989664 ENCODE Processing Pipeline 44501c57538a51937d2e9e81acfc8bac https://www.encodeproject.org/files/ENCFF033QLF/@@download/ENCFF033QLF.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF052ZQB bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF370PSF, ENCFF960VKL 4874681 ENCODE Processing Pipeline 2c7b3db5c6789a90842d0c31d004bf5f https://www.encodeproject.org/files/ENCFF052ZQB/@@download/ENCFF052ZQB.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF770WCW bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF370PSF, ENCFF406XEH, ENCFF439AQO, ENCFF960VKL 6176813 ENCODE Processing Pipeline 90c04a9a827f6c746b8287f66b10c1b2 https://www.encodeproject.org/files/ENCFF770WCW/@@download/ENCFF770WCW.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF589TTL bigBed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF770WCW 13607942 ENCODE Processing Pipeline 7266241bb3168dd433ed9a4d46e8d141 https://www.encodeproject.org/files/ENCFF589TTL/@@download/ENCFF589TTL.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF592GSR bed narrowPeak conservative idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF052ZQB, ENCFF419RSJ, ENCFF457LLF, ENCFF770WCW 134436 ENCODE Processing Pipeline f67ee217183d6ac21dd90f01b00277a0 https://www.encodeproject.org/files/ENCFF592GSR/@@download/ENCFF592GSR.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF997DNR bigBed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF052ZQB 11081036 ENCODE Processing Pipeline bc0985161c615726a7c3a6ecbafdfe56 https://www.encodeproject.org/files/ENCFF997DNR/@@download/ENCFF997DNR.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF304XCY bigBed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF457LLF 11060504 ENCODE Processing Pipeline a024618be10b6b2a781b4dcdf9764eb7 https://www.encodeproject.org/files/ENCFF304XCY/@@download/ENCFF304XCY.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF457LLF bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF406XEH, ENCFF439AQO 4911417 ENCODE Processing Pipeline 3e9df9d11757f92ded095e6ca8e8bcc2 https://www.encodeproject.org/files/ENCFF457LLF/@@download/ENCFF457LLF.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF433GRM bigBed narrowPeak conservative idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF592GSR 305746 ENCODE Processing Pipeline b09abe970a121e9c546edfb5673f5038 https://www.encodeproject.org/files/ENCFF433GRM/@@download/ENCFF433GRM.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF661UOD bigWig fold change over control ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF370PSF, ENCFF960VKL 423990386 ENCODE Processing Pipeline bf4fb4560577831f50de3bccd25830b4 https://www.encodeproject.org/files/ENCFF661UOD/@@download/ENCFF661UOD.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF287REX bigWig fold change over control ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF370PSF, ENCFF406XEH, ENCFF439AQO, ENCFF960VKL 945322997 ENCODE Processing Pipeline 5ef96cf21869c7cd5476c52867a5bbaf https://www.encodeproject.org/files/ENCFF287REX/@@download/ENCFF287REX.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF249KVU bigBed narrowPeak optimal idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF808WST 332222 ENCODE Processing Pipeline 8a2a5f7061caa021f2c6d35e8f076be9 https://www.encodeproject.org/files/ENCFF249KVU/@@download/ENCFF249KVU.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF808WST bed narrowPeak optimal idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF052ZQB, ENCFF419RSJ, ENCFF457LLF, ENCFF770WCW 151309 ENCODE Processing Pipeline 1d762c4ddf450561e8f20112fc967dbe https://www.encodeproject.org/files/ENCFF808WST/@@download/ENCFF808WST.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF115CJO bam unfiltered alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF052AWV, ENCFF807MUK 1004978307 ENCODE Processing Pipeline 300596eca88929e783bd2fb93ed2df9d https://www.encodeproject.org/files/ENCFF115CJO/@@download/ENCFF115CJO.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF662FSB bam unfiltered alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF399FVC, ENCFF807MUK 863503406 ENCODE Processing Pipeline 6bbec02f6d150b16fe462eaa9b2dcf6a https://www.encodeproject.org/files/ENCFF662FSB/@@download/ENCFF662FSB.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF682QIZ bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF399FVC, ENCFF807MUK 664025355 ENCODE Processing Pipeline 33990b24f29091ad7225aa1b9fe33647 https://www.encodeproject.org/files/ENCFF682QIZ/@@download/ENCFF682QIZ.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF297FMS bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF052AWV, ENCFF807MUK 739929430 ENCODE Processing Pipeline 495fb3bb287c55ff050a9ae9da44447f https://www.encodeproject.org/files/ENCFF297FMS/@@download/ENCFF297FMS.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF914OWD bigWig fold change over control ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF297FMS, ENCFF682QIZ, ENCFF807CUF, ENCFF991UTU 977742604 ENCODE Processing Pipeline 8cf66ffd0bcc4950d114ff57931d84f8 https://www.encodeproject.org/files/ENCFF914OWD/@@download/ENCFF914OWD.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF963HHX bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF297FMS, ENCFF807CUF 4923460 ENCODE Processing Pipeline 1e73c81529035da9f85ec2cf5613081b https://www.encodeproject.org/files/ENCFF963HHX/@@download/ENCFF963HHX.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF831MEQ bed narrowPeak optimal idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF001TDO, ENCFF145YNF, ENCFF618LWB, ENCFF963HHX 154457 ENCODE Processing Pipeline a9c85d1261d6986e36bde2bff9d695fc https://www.encodeproject.org/files/ENCFF831MEQ/@@download/ENCFF831MEQ.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF970PUY bigBed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF618LWB 13566650 ENCODE Processing Pipeline aef961381c2ecc791c721035b5158cbb https://www.encodeproject.org/files/ENCFF970PUY/@@download/ENCFF970PUY.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF548KCW bigWig signal p-value ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF297FMS, ENCFF682QIZ, ENCFF807CUF, ENCFF991UTU 922477095 ENCODE Processing Pipeline ee92a2773c4b57907a7e78979ee0532e https://www.encodeproject.org/files/ENCFF548KCW/@@download/ENCFF548KCW.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF145YNF bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF682QIZ, ENCFF991UTU 4609083 ENCODE Processing Pipeline bbb806fcf28ecd705613053b179cb4a9 https://www.encodeproject.org/files/ENCFF145YNF/@@download/ENCFF145YNF.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF861WGA bigBed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF963HHX 11068187 ENCODE Processing Pipeline 26b2174d1b9e0f9dc7f52d553e2b1916 https://www.encodeproject.org/files/ENCFF861WGA/@@download/ENCFF861WGA.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF964RGN bigBed narrowPeak conservative idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF737IIW 299068 ENCODE Processing Pipeline 219f42f00ca9bcea90ca368e81d1b2e4 https://www.encodeproject.org/files/ENCFF964RGN/@@download/ENCFF964RGN.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF600NJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF831MEQ 333782 ENCODE Processing Pipeline de6a60927e9a591f9bb079dca5e0bfb4 https://www.encodeproject.org/files/ENCFF600NJQ/@@download/ENCFF600NJQ.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF618LWB bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF297FMS, ENCFF682QIZ, ENCFF807CUF, ENCFF991UTU 6204808 ENCODE Processing Pipeline af63490049b32f3c78e8c1452b63c9ac https://www.encodeproject.org/files/ENCFF618LWB/@@download/ENCFF618LWB.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF737IIW bed narrowPeak conservative idr thresholded peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF001TDO, ENCFF145YNF, ENCFF618LWB, ENCFF963HHX 130899 ENCODE Processing Pipeline ca5d1f6d9baad5e06121184b4fe3ebd9 https://www.encodeproject.org/files/ENCFF737IIW/@@download/ENCFF737IIW.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF081BYW bigBed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF145YNF 10973105 ENCODE Processing Pipeline 5d22f980188835dc1f296642c270ea6d https://www.encodeproject.org/files/ENCFF081BYW/@@download/ENCFF081BYW.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF768AUO fastq reads ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF620QLM 1809642340 Richard Myers, HAIB 573bbf4a8784979ece8e9d07d534082f https://www.encodeproject.org/files/ENCFF768AUO/@@download/ENCFF768AUO.fastq.gz Illumina HiSeq 2000 /files/ENCFF269BTX/ released antibody characterized with exemption experiment not submitted to GEO ENCFF620QLM fastq reads ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF768AUO 1834903466 Richard Myers, HAIB e328535036c614b800c8a2c4308d8ebb https://www.encodeproject.org/files/ENCFF620QLM/@@download/ENCFF620QLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF605FUW/ released antibody characterized with exemption experiment not submitted to GEO ENCFF913HVU bam unfiltered alignments ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF620QLM, ENCFF768AUO, ENCFF807MUK 4280026493 ENCODE Processing Pipeline 9f798f97617480aec82ddff83e73e837 https://www.encodeproject.org/files/ENCFF913HVU/@@download/ENCFF913HVU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF771VGT bam alignments ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF620QLM, ENCFF768AUO, ENCFF807MUK 3318991548 ENCODE Processing Pipeline c382992042e15d4ff85608bdb6033bba https://www.encodeproject.org/files/ENCFF771VGT/@@download/ENCFF771VGT.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF237VET bam unfiltered alignments ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF620QLM, ENCFF643CGH, ENCFF768AUO 4290339588 ENCODE Processing Pipeline e3ea2204234b944822af9d015c5aa44b https://www.encodeproject.org/files/ENCFF237VET/@@download/ENCFF237VET.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF314TJA bam alignments ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF620QLM, ENCFF643CGH, ENCFF768AUO 3318810180 ENCODE Processing Pipeline f1e3a0033b39245f8bf8825958b66b63 https://www.encodeproject.org/files/ENCFF314TJA/@@download/ENCFF314TJA.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF378ATP bigWig signal p-value ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF314TJA, ENCFF858COI 1065720504 ENCODE Processing Pipeline c31df4a702240b619ed0c61037a3a218 https://www.encodeproject.org/files/ENCFF378ATP/@@download/ENCFF378ATP.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF149NUT bigWig fold change over control ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF314TJA, ENCFF858COI 993337420 ENCODE Processing Pipeline 0cb1962539fe55cc15148764d43b48ee https://www.encodeproject.org/files/ENCFF149NUT/@@download/ENCFF149NUT.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF248DZQ bed narrowPeak peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF314TJA, ENCFF858COI 6865641 ENCODE Processing Pipeline 7b7178fd424497b0c17f2edcd73929fc https://www.encodeproject.org/files/ENCFF248DZQ/@@download/ENCFF248DZQ.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF558DNJ bigBed narrowPeak peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF248DZQ 13417624 ENCODE Processing Pipeline e6118213bdbc07e2a4f594c6603555b0 https://www.encodeproject.org/files/ENCFF558DNJ/@@download/ENCFF558DNJ.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF956LUK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF679KFK 1823799 ENCODE Processing Pipeline eea98d0adb98f68984e5a8aca8718daf https://www.encodeproject.org/files/ENCFF956LUK/@@download/ENCFF956LUK.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF679KFK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF248DZQ, ENCFF419RSJ 992030 ENCODE Processing Pipeline 3b33b52a3eea86ec3aa3e0dd27013b2a https://www.encodeproject.org/files/ENCFF679KFK/@@download/ENCFF679KFK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF271HCA bigWig signal p-value ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF771VGT, ENCFF962NQY 1062736647 ENCODE Processing Pipeline b4d9a9c68ffd98aba4516dac6d1dac50 https://www.encodeproject.org/files/ENCFF271HCA/@@download/ENCFF271HCA.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF682YKY bigWig fold change over control ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF771VGT, ENCFF962NQY 992968182 ENCODE Processing Pipeline 23f56bbe0415647f18b961e27149f268 https://www.encodeproject.org/files/ENCFF682YKY/@@download/ENCFF682YKY.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF111FTU bed narrowPeak peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF771VGT, ENCFF962NQY 6832982 ENCODE Processing Pipeline 460550f5956928e515dcffe7d9a9ec34 https://www.encodeproject.org/files/ENCFF111FTU/@@download/ENCFF111FTU.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF491SAX bigBed narrowPeak peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF111FTU 13369553 ENCODE Processing Pipeline 836b23dd98e6d47a7c69ea1e61242044 https://www.encodeproject.org/files/ENCFF491SAX/@@download/ENCFF491SAX.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF760XJE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF111FTU 980001 ENCODE Processing Pipeline 8ce0c0b06077545f9501f64b15b8ff6c https://www.encodeproject.org/files/ENCFF760XJE/@@download/ENCFF760XJE.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF158RBQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF760XJE 1804303 ENCODE Processing Pipeline 727fa3cea4e9d7b793d1e1c25835e9f4 https://www.encodeproject.org/files/ENCFF158RBQ/@@download/ENCFF158RBQ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF573PNL bam unfiltered alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAI, ENCFF807MUK 1425987490 ENCODE Processing Pipeline 01da221d738ac774f75ba8f308b78518 https://www.encodeproject.org/files/ENCFF573PNL/@@download/ENCFF573PNL.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF927GYN bam unfiltered alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAJ, ENCFF807MUK 950268542 ENCODE Processing Pipeline aa39da7c869bd87f1d7ca913f0a1602f https://www.encodeproject.org/files/ENCFF927GYN/@@download/ENCFF927GYN.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF472YFZ bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF425JYG, ENCFF513CSC, ENCFF689HKH, ENCFF863STQ 5813750 ENCODE Processing Pipeline 78a0f0096c18c381a39b98a731aa4041 https://www.encodeproject.org/files/ENCFF472YFZ/@@download/ENCFF472YFZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF072HSB bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF689HKH, ENCFF863STQ 4506848 ENCODE Processing Pipeline fc59d810739cac715ca4f676293603f5 https://www.encodeproject.org/files/ENCFF072HSB/@@download/ENCFF072HSB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF542JSY bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 4165438 ENCODE Processing Pipeline ba3e8d02fb54cd34157a8089726aaa96 https://www.encodeproject.org/files/ENCFF542JSY/@@download/ENCFF542JSY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF053NPG bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF072HSB 11130252 ENCODE Processing Pipeline edf0dc0ea38770694e0fcaf0fccc8f0c https://www.encodeproject.org/files/ENCFF053NPG/@@download/ENCFF053NPG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF519AWG bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF542JSY 10640295 ENCODE Processing Pipeline 74e2829349fdaf26301121544a9622c4 https://www.encodeproject.org/files/ENCFF519AWG/@@download/ENCFF519AWG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF926GFK bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF472YFZ 11488974 ENCODE Processing Pipeline a4949709fcb5cad5a93ecf81e4521bf1 https://www.encodeproject.org/files/ENCFF926GFK/@@download/ENCFF926GFK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF750XJM bed narrowPeak conservative idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF072HSB, ENCFF472YFZ, ENCFF542JSY 57316 ENCODE Processing Pipeline 064da01af6c51672d7c343c78e879a90 https://www.encodeproject.org/files/ENCFF750XJM/@@download/ENCFF750XJM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF712OYP bigBed narrowPeak conservative idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF750XJM 142071 ENCODE Processing Pipeline 1f8202a0648ea5bfac0684009bca15d8 https://www.encodeproject.org/files/ENCFF712OYP/@@download/ENCFF712OYP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF955VEK bigBed narrowPeak optimal idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF288UUU 196066 ENCODE Processing Pipeline 78f084722a8fbe8ead8e1f57200ace8e https://www.encodeproject.org/files/ENCFF955VEK/@@download/ENCFF955VEK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF288UUU bed narrowPeak optimal idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF072HSB, ENCFF472YFZ, ENCFF542JSY 73312 ENCODE Processing Pipeline 45aa3b730ac79670ffb336af6ab340d4 https://www.encodeproject.org/files/ENCFF288UUU/@@download/ENCFF288UUU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF002EAI fastq reads ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 1000976772 Michael Snyder, Stanford cc6f6467f0aa44e24741b514dec2c621 SRA:SRR5111898 https://www.encodeproject.org/files/ENCFF002EAI/@@download/ENCFF002EAI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF002EAJ fastq reads ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 762980219 Michael Snyder, Stanford 030ba55923d43881e854c998d4ad3369 SRA:SRR5111899 https://www.encodeproject.org/files/ENCFF002EAJ/@@download/ENCFF002EAJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF513CSC bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAJ, ENCFF807MUK 642347984 ENCODE Processing Pipeline a4b8facd77c7cc6b29a50d27fa6a8eba https://www.encodeproject.org/files/ENCFF513CSC/@@download/ENCFF513CSC.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF689HKH bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAI, ENCFF807MUK 989893299 ENCODE Processing Pipeline d18d97e1822451da9d01bcb21322d16b https://www.encodeproject.org/files/ENCFF689HKH/@@download/ENCFF689HKH.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF159LKY bigWig signal p-value ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 515631403 ENCODE Processing Pipeline f87dc69b2a8b166f28d609d73ecff519 https://www.encodeproject.org/files/ENCFF159LKY/@@download/ENCFF159LKY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF799DUP bigWig signal p-value ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF689HKH, ENCFF863STQ 578951400 ENCODE Processing Pipeline 088aa44cb6e9c53fc023f026475e6c0a https://www.encodeproject.org/files/ENCFF799DUP/@@download/ENCFF799DUP.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF247MKC bigWig signal p-value ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF425JYG, ENCFF513CSC, ENCFF689HKH, ENCFF863STQ 1053424846 ENCODE Processing Pipeline db4f4e2d25248ae9ad3899753617a890 https://www.encodeproject.org/files/ENCFF247MKC/@@download/ENCFF247MKC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF004TKK bigWig fold change over control ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 349747756 ENCODE Processing Pipeline 67cd86cc64bd7bd686f1b730d77ad3a8 https://www.encodeproject.org/files/ENCFF004TKK/@@download/ENCFF004TKK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF463XUJ bigWig fold change over control ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF689HKH, ENCFF863STQ 537528201 ENCODE Processing Pipeline e960ddaed2f2814ab0a056f8b26b7370 https://www.encodeproject.org/files/ENCFF463XUJ/@@download/ENCFF463XUJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF631NAL bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF689HKH, ENCFF863STQ 4731156 ENCODE Processing Pipeline 10c662a29866242b03b5aa06e3afad31 https://www.encodeproject.org/files/ENCFF631NAL/@@download/ENCFF631NAL.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF907QKO bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 4316930 ENCODE Processing Pipeline a4549a0cc1168a9c397a432250623783 https://www.encodeproject.org/files/ENCFF907QKO/@@download/ENCFF907QKO.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF747WRX bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF425JYG, ENCFF513CSC, ENCFF689HKH, ENCFF863STQ 6035982 ENCODE Processing Pipeline 3aa6577d0f86ded85c4a04e98a06afae https://www.encodeproject.org/files/ENCFF747WRX/@@download/ENCFF747WRX.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF028EZM bigWig fold change over control ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF425JYG, ENCFF513CSC, ENCFF689HKH, ENCFF863STQ 963978231 ENCODE Processing Pipeline bab6122ef24959e5727de2f3b2b1ca90 https://www.encodeproject.org/files/ENCFF028EZM/@@download/ENCFF028EZM.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF759MVF bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF907QKO 10886922 ENCODE Processing Pipeline 17c1f14963d7b6ac0bb89d95a50c35cd https://www.encodeproject.org/files/ENCFF759MVF/@@download/ENCFF759MVF.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF318ZIS bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF747WRX 11512143 ENCODE Processing Pipeline 04fdeb8143ec75d198d5167852d5035b https://www.encodeproject.org/files/ENCFF318ZIS/@@download/ENCFF318ZIS.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF965UAR bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF631NAL 11280534 ENCODE Processing Pipeline dd9fa175baeee24a9bf947041bb454fa https://www.encodeproject.org/files/ENCFF965UAR/@@download/ENCFF965UAR.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF839GUJ bam unfiltered alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAI, ENCFF643CGH 1433908521 ENCODE Processing Pipeline 8a2b8e9329341946d94b4efd005f8342 https://www.encodeproject.org/files/ENCFF839GUJ/@@download/ENCFF839GUJ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF011PQC bam unfiltered alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAJ, ENCFF643CGH 954536201 ENCODE Processing Pipeline 8540212c68c45b694650a0d0e875fe6d https://www.encodeproject.org/files/ENCFF011PQC/@@download/ENCFF011PQC.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF215YFO bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAI, ENCFF643CGH 989605846 ENCODE Processing Pipeline 8f2f43645849f1450a7ea57ca0594cef https://www.encodeproject.org/files/ENCFF215YFO/@@download/ENCFF215YFO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF754RTV bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAJ, ENCFF643CGH 642156618 ENCODE Processing Pipeline 464c2ab44b209522438ab5fb69c9a127 https://www.encodeproject.org/files/ENCFF754RTV/@@download/ENCFF754RTV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF697TDK bigWig signal p-value ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF754RTV, ENCFF949XNJ 442138481 ENCODE Processing Pipeline f5d16011a1a1d0c647435eed6d1ae9bb https://www.encodeproject.org/files/ENCFF697TDK/@@download/ENCFF697TDK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF882BSE bigWig signal p-value ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF215YFO, ENCFF918AJW 513663895 ENCODE Processing Pipeline f5f30117bd33feb0b4e0afd369f09d80 https://www.encodeproject.org/files/ENCFF882BSE/@@download/ENCFF882BSE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF251BAS bigWig signal p-value ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF215YFO, ENCFF754RTV, ENCFF918AJW, ENCFF949XNJ 944694035 ENCODE Processing Pipeline 6f33591f75a71122f336f036e87cd835 https://www.encodeproject.org/files/ENCFF251BAS/@@download/ENCFF251BAS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF232RNX bigWig fold change over control ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF754RTV, ENCFF949XNJ 349616216 ENCODE Processing Pipeline 22da2a92cd11b6da28dbaee9a4e6e2df https://www.encodeproject.org/files/ENCFF232RNX/@@download/ENCFF232RNX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF908FKC bigWig fold change over control ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF215YFO, ENCFF918AJW 544291869 ENCODE Processing Pipeline 0936fd853b67239319950a6eecfd1111 https://www.encodeproject.org/files/ENCFF908FKC/@@download/ENCFF908FKC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF866CZX bigWig fold change over control ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF215YFO, ENCFF754RTV, ENCFF918AJW, ENCFF949XNJ 963591615 ENCODE Processing Pipeline b8140c6afd49c8676bd820189009ed64 https://www.encodeproject.org/files/ENCFF866CZX/@@download/ENCFF866CZX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF354MRC bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF754RTV, ENCFF949XNJ 4146308 ENCODE Processing Pipeline a5f0921f08d34c7b330902e00f58edf2 https://www.encodeproject.org/files/ENCFF354MRC/@@download/ENCFF354MRC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF387PYV bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF215YFO, ENCFF918AJW 4455607 ENCODE Processing Pipeline 19d4b176ae7d2926435db6a9c5cf807d https://www.encodeproject.org/files/ENCFF387PYV/@@download/ENCFF387PYV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF115SGI bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF215YFO, ENCFF754RTV, ENCFF918AJW, ENCFF949XNJ 5752137 ENCODE Processing Pipeline 0f17d4bf919ddc499d1854099a16e7e8 https://www.encodeproject.org/files/ENCFF115SGI/@@download/ENCFF115SGI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF164SLL bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF354MRC 10576558 ENCODE Processing Pipeline c97bf824b9e63948278320f7471a8132 https://www.encodeproject.org/files/ENCFF164SLL/@@download/ENCFF164SLL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF672FVK bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 ENCFF387PYV 11018218 ENCODE Processing Pipeline 24049368e65f7e63b598ae9f8dbc8712 https://www.encodeproject.org/files/ENCFF672FVK/@@download/ENCFF672FVK.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF914HTF bigBed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF115SGI 11528739 ENCODE Processing Pipeline c07abda624ed3d09587a9bea66c67ef4 https://www.encodeproject.org/files/ENCFF914HTF/@@download/ENCFF914HTF.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF853OHS bigBed narrowPeak conservative idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF765WAE 176294 ENCODE Processing Pipeline a73ddc5403dd8894ed48b0d6813b082a https://www.encodeproject.org/files/ENCFF853OHS/@@download/ENCFF853OHS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF765WAE bed narrowPeak conservative idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF115SGI, ENCFF354MRC, ENCFF387PYV, ENCFF419RSJ 62384 ENCODE Processing Pipeline c3bd6541b2a10c643275789ae3e1fdc7 https://www.encodeproject.org/files/ENCFF765WAE/@@download/ENCFF765WAE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF661NNJ bed narrowPeak optimal idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF115SGI, ENCFF354MRC, ENCFF387PYV, ENCFF419RSJ 81558 ENCODE Processing Pipeline 1b8dade58aec44aa82bcbb7eef9d4e6e https://www.encodeproject.org/files/ENCFF661NNJ/@@download/ENCFF661NNJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF585ZZX bigBed narrowPeak optimal idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF661NNJ 209440 ENCODE Processing Pipeline 33561333752b2d135a7866c6e27855c7 https://www.encodeproject.org/files/ENCFF585ZZX/@@download/ENCFF585ZZX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF173JBV bed narrowPeak conservative idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF631NAL, ENCFF747WRX, ENCFF907QKO 50317 ENCODE Processing Pipeline 2d1528b38e4309f74538b0d954119b6c https://www.encodeproject.org/files/ENCFF173JBV/@@download/ENCFF173JBV.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF416NYZ bigBed narrowPeak conservative idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF173JBV 132704 ENCODE Processing Pipeline 091f975db1abcbf566f1ae1fa1c0e606 https://www.encodeproject.org/files/ENCFF416NYZ/@@download/ENCFF416NYZ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF129ABL bed narrowPeak optimal idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF631NAL, ENCFF747WRX, ENCFF907QKO 62227 ENCODE Processing Pipeline f874d13bbe17428cc2342b49bb7f77b9 https://www.encodeproject.org/files/ENCFF129ABL/@@download/ENCFF129ABL.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF094ONE bigBed narrowPeak optimal idr thresholded peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF129ABL 149959 ENCODE Processing Pipeline 3f84bcd4f5194458f0cf3cc1c41135c5 https://www.encodeproject.org/files/ENCFF094ONE/@@download/ENCFF094ONE.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF950XSB fastq reads ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF419ZMU 2103184523 Richard Myers, HAIB bb7c3b068fc907d21590aa211547abaf https://www.encodeproject.org/files/ENCFF950XSB/@@download/ENCFF950XSB.fastq.gz Illumina HiSeq 2000 /files/ENCFF453QHY/ released antibody characterized with exemption experiment not submitted to GEO ENCFF419ZMU fastq reads ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF950XSB 2140006154 Richard Myers, HAIB 0e27ed29b40814c02e9d9e35404a429d https://www.encodeproject.org/files/ENCFF419ZMU/@@download/ENCFF419ZMU.fastq.gz Illumina HiSeq 2000 /files/ENCFF287ZTK/ released antibody characterized with exemption experiment not submitted to GEO ENCFF379HZY bam unfiltered alignments ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF419ZMU, ENCFF807MUK, ENCFF950XSB 4800815910 ENCODE Processing Pipeline 0aa5fc256c5bafe63e8c75aa19313cb2 https://www.encodeproject.org/files/ENCFF379HZY/@@download/ENCFF379HZY.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF403XAG bam alignments ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF419ZMU, ENCFF807MUK, ENCFF950XSB 3381817408 ENCODE Processing Pipeline 2456f0f750f49f0c7ce501aa65be82c5 https://www.encodeproject.org/files/ENCFF403XAG/@@download/ENCFF403XAG.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF399APN bam unfiltered alignments ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF419ZMU, ENCFF643CGH, ENCFF950XSB 4813027967 ENCODE Processing Pipeline f50f7c391981479249031c35a02bcae5 https://www.encodeproject.org/files/ENCFF399APN/@@download/ENCFF399APN.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF972HFX bam alignments ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF419ZMU, ENCFF643CGH, ENCFF950XSB 3380617791 ENCODE Processing Pipeline 676ad5c7600fa10e4ccc887ebe383949 https://www.encodeproject.org/files/ENCFF972HFX/@@download/ENCFF972HFX.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF978IWR bigBed narrowPeak peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF746HAO 13379062 ENCODE Processing Pipeline f01f1856ac9c8d4ad1536ef50a16da50 https://www.encodeproject.org/files/ENCFF978IWR/@@download/ENCFF978IWR.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF068MCQ bigWig fold change over control ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF916QVZ, ENCFF972HFX 918639215 ENCODE Processing Pipeline 9c7f6a4669fdbdbe3b718472614747b5 https://www.encodeproject.org/files/ENCFF068MCQ/@@download/ENCFF068MCQ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF095IET bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF746HAO 1057380 ENCODE Processing Pipeline 5bafdf9dadbd96249659a13b43c900b8 https://www.encodeproject.org/files/ENCFF095IET/@@download/ENCFF095IET.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF294FNN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF095IET 1940730 ENCODE Processing Pipeline b86c797ebfbc2d30e7ce431dc1ec4921 https://www.encodeproject.org/files/ENCFF294FNN/@@download/ENCFF294FNN.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF746HAO bed narrowPeak peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF916QVZ, ENCFF972HFX 6882290 ENCODE Processing Pipeline a4e2030f1ef6480f73704f7809c6cf9c https://www.encodeproject.org/files/ENCFF746HAO/@@download/ENCFF746HAO.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF523QMX bigWig signal p-value ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF916QVZ, ENCFF972HFX 996576343 ENCODE Processing Pipeline 8cc9e6ffd40e26b05cb2cda9a9146116 https://www.encodeproject.org/files/ENCFF523QMX/@@download/ENCFF523QMX.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF691VMG bigWig fold change over control ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF403XAG, ENCFF629CIH 895936803 ENCODE Processing Pipeline dc2c2c3fbbc54f84cdf2bfc90bd71d6e https://www.encodeproject.org/files/ENCFF691VMG/@@download/ENCFF691VMG.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF074LXY bed narrowPeak peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF403XAG, ENCFF629CIH 6926235 ENCODE Processing Pipeline a1c88cf606d45f6889b2dbea34c55ca8 https://www.encodeproject.org/files/ENCFF074LXY/@@download/ENCFF074LXY.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF914HYV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF074LXY 1072565 ENCODE Processing Pipeline d0f9fe4154277822b3d6abeeb7aa23c7 https://www.encodeproject.org/files/ENCFF914HYV/@@download/ENCFF914HYV.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF582HYQ bigWig signal p-value ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF403XAG, ENCFF629CIH 975031058 ENCODE Processing Pipeline a8eca177d066a316a7bc6f25ad3fcd2b https://www.encodeproject.org/files/ENCFF582HYQ/@@download/ENCFF582HYQ.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF942TCY bigBed narrowPeak peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF074LXY 13429564 ENCODE Processing Pipeline d5e9218a083d32ccc2077198b272caff https://www.encodeproject.org/files/ENCFF942TCY/@@download/ENCFF942TCY.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF839BEN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF914HYV 1964212 ENCODE Processing Pipeline 4f6277563973a8f15acea054f33de3da https://www.encodeproject.org/files/ENCFF839BEN/@@download/ENCFF839BEN.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000PBR bam alignments ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PCD 1270146936 Richard Myers, HAIB f43b09234e217565ba9720987a1e603e https://www.encodeproject.org/files/ENCFF000PBR/@@download/ENCFF000PBR.bam hg19 released biological replicates with identical biosample ENCFF000PBS bigBed broadPeak peaks ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEI 102046 Richard Myers, HAIB 1fea05a05a4fe30e6fc00926babb2ccf https://www.encodeproject.org/files/ENCFF000PBS/@@download/ENCFF000PBS.bigBed hg19 released biological replicates with identical biosample ENCFF000PBT bigBed broadPeak peaks ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UEJ 110707 Richard Myers, HAIB 48a5215ed39cb834508ead085e65c9db https://www.encodeproject.org/files/ENCFF000PBT/@@download/ENCFF000PBT.bigBed hg19 released biological replicates with identical biosample ENCFF000PBU bam alignments ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PCE 1500257033 Richard Myers, HAIB 72bb69e1b83472b4304afb9e6df4597a https://www.encodeproject.org/files/ENCFF000PBU/@@download/ENCFF000PBU.bam hg19 released biological replicates with identical biosample ENCFF000PBV bigWig raw signal ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 160540215 Richard Myers, HAIB 5195ec7ac02de8b652107a7cdc496eed https://www.encodeproject.org/files/ENCFF000PBV/@@download/ENCFF000PBV.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PBX bigWig raw signal ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 248029189 Richard Myers, HAIB e4501f9a6d50d1b65c22abb8a35da449 https://www.encodeproject.org/files/ENCFF000PBX/@@download/ENCFF000PBX.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PCD fastq reads ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1318034587 Richard Myers, HAIB d1786d1c480daf12a44dd70127407a3c https://www.encodeproject.org/files/ENCFF000PCD/@@download/ENCFF000PCD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PCE fastq reads ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1535566000 Richard Myers, HAIB f0ad6dbafd02f697675d45011fbe5c7e https://www.encodeproject.org/files/ENCFF000PCE/@@download/ENCFF000PCE.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEI bed broadPeak peaks ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 34668 Richard Myers, HAIB 0576caf6e9d5c882f6c5d1adc1397a16 https://www.encodeproject.org/files/ENCFF001UEI/@@download/ENCFF001UEI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UEJ bed broadPeak peaks ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 41716 Richard Myers, HAIB 7dd94af61628fa3fc1c07ce288e8a195 https://www.encodeproject.org/files/ENCFF001UEJ/@@download/ENCFF001UEJ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF442RQA fastq reads ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 1 50 single-ended 1388162105 Richard Myers, HAIB a02def954828c45dd020c007c5691ac9 SRA:SRR5339317 https://www.encodeproject.org/files/ENCFF442RQA/@@download/ENCFF442RQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF876NBT/ released low read depth ENCFF194UYN fastq reads ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 1 50 single-ended 1423091005 Richard Myers, HAIB 2b4fa360bfc2f7fda55fc34a7ac32797 SRA:SRR5339318 https://www.encodeproject.org/files/ENCFF194UYN/@@download/ENCFF194UYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF737ELZ/ released low read depth ENCFF252RRA bam unfiltered alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 50 ENCFF442RQA, ENCFF643CGH 1504530751 ENCODE Processing Pipeline 2e26dc9f2bfa04ef52b46a7db9f15275 https://www.encodeproject.org/files/ENCFF252RRA/@@download/ENCFF252RRA.bam GRCh38 released low read depth ENCFF939GXE bam unfiltered alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 50 ENCFF194UYN, ENCFF807MUK 1588514843 ENCODE Processing Pipeline 8f9f98d2a4ff44658a832a53080ea9be https://www.encodeproject.org/files/ENCFF939GXE/@@download/ENCFF939GXE.bam hg19 released low read depth ENCFF643DLK bam unfiltered alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 50 ENCFF442RQA, ENCFF807MUK 1499174474 ENCODE Processing Pipeline c35497f40e3e443f651e14acbfccdfaa https://www.encodeproject.org/files/ENCFF643DLK/@@download/ENCFF643DLK.bam hg19 released low read depth ENCFF692WPN bam unfiltered alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 50 ENCFF194UYN, ENCFF643CGH 1596126292 ENCODE Processing Pipeline ed6d3fa2447596b11a93e89f824da834 https://www.encodeproject.org/files/ENCFF692WPN/@@download/ENCFF692WPN.bam GRCh38 released low read depth ENCFF871ONC bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 50 ENCFF442RQA, ENCFF643CGH 1089171569 ENCODE Processing Pipeline 667308a98938dd63e68446beadab1225 https://www.encodeproject.org/files/ENCFF871ONC/@@download/ENCFF871ONC.bam GRCh38 released low read depth ENCFF679MUX bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 50 ENCFF442RQA, ENCFF807MUK 1089445243 ENCODE Processing Pipeline 6e13c1b81f936aa68d5891290c30df43 https://www.encodeproject.org/files/ENCFF679MUX/@@download/ENCFF679MUX.bam hg19 released low read depth ENCFF305LRO bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 50 ENCFF194UYN, ENCFF807MUK 1205497176 ENCODE Processing Pipeline ac9ad6198085b9a273398d0238acb6bd https://www.encodeproject.org/files/ENCFF305LRO/@@download/ENCFF305LRO.bam hg19 released low read depth ENCFF370ZNH bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 50 ENCFF194UYN, ENCFF643CGH 1205475340 ENCODE Processing Pipeline 9d48da9c24bff0097f71b110a7db332b https://www.encodeproject.org/files/ENCFF370ZNH/@@download/ENCFF370ZNH.bam GRCh38 released low read depth ENCFF639QJX bigBed narrowPeak conservative idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF044GIB 563571 ENCODE Processing Pipeline 820582c8315478d5036fff8e755b9632 https://www.encodeproject.org/files/ENCFF639QJX/@@download/ENCFF639QJX.bigBed hg19 released low read depth ENCFF104QVL bigWig signal p-value ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 881576587 ENCODE Processing Pipeline e20e6bc56449e8abacda57c5867d4cca https://www.encodeproject.org/files/ENCFF104QVL/@@download/ENCFF104QVL.bigWig hg19 released low read depth ENCFF949TDA bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF305LRO, ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 6781404 ENCODE Processing Pipeline 01228792631120dc1ebb41b5ef99e2ce https://www.encodeproject.org/files/ENCFF949TDA/@@download/ENCFF949TDA.bed.gz hg19 released low read depth ENCFF791BSE bigWig signal p-value ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF305LRO, ENCFF969DYI, ENCFF994YBV 851167302 ENCODE Processing Pipeline 1d082739d0fad086b8c4a605a79a4956 https://www.encodeproject.org/files/ENCFF791BSE/@@download/ENCFF791BSE.bigWig hg19 released low read depth ENCFF790HIL bigWig signal p-value ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF305LRO, ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 978448461 ENCODE Processing Pipeline 1bde846c5217c810bddc1f776acedf72 https://www.encodeproject.org/files/ENCFF790HIL/@@download/ENCFF790HIL.bigWig hg19 released low read depth ENCFF104YZH bigWig fold change over control ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF305LRO, ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 1101775731 ENCODE Processing Pipeline adf9826b2141c2d8e75ec02da690a873 https://www.encodeproject.org/files/ENCFF104YZH/@@download/ENCFF104YZH.bigWig hg19 released low read depth ENCFF258RLV bigWig fold change over control ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 650451591 ENCODE Processing Pipeline c6fe767c70856ce738016b50ee9c1a00 https://www.encodeproject.org/files/ENCFF258RLV/@@download/ENCFF258RLV.bigWig hg19 released low read depth ENCFF715NEW bigWig fold change over control ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF305LRO, ENCFF969DYI, ENCFF994YBV 834418340 ENCODE Processing Pipeline 832bb426119c681287c6c7128e19fcfb https://www.encodeproject.org/files/ENCFF715NEW/@@download/ENCFF715NEW.bigWig hg19 released low read depth ENCFF995FGG bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF305LRO, ENCFF969DYI, ENCFF994YBV 6235893 ENCODE Processing Pipeline 42d466ae63217d0f4e7128436136984f https://www.encodeproject.org/files/ENCFF995FGG/@@download/ENCFF995FGG.bed.gz hg19 released low read depth ENCFF451UDV bigBed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF995FGG 13468048 ENCODE Processing Pipeline eec00f1924564502f253e165445b01de https://www.encodeproject.org/files/ENCFF451UDV/@@download/ENCFF451UDV.bigBed hg19 released low read depth ENCFF219PGQ bigBed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF949TDA 13568409 ENCODE Processing Pipeline 4616ecae4180fa2d61595a1519a1bb66 https://www.encodeproject.org/files/ENCFF219PGQ/@@download/ENCFF219PGQ.bigBed hg19 released low read depth ENCFF545UIM bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 6010076 ENCODE Processing Pipeline 50ab1e0210599afa6942f301dbeafc67 https://www.encodeproject.org/files/ENCFF545UIM/@@download/ENCFF545UIM.bed.gz hg19 released low read depth ENCFF177PAU bigBed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF545UIM 13522050 ENCODE Processing Pipeline 5f79a4ce90bcee6b26d5512b3175adf8 https://www.encodeproject.org/files/ENCFF177PAU/@@download/ENCFF177PAU.bigBed hg19 released low read depth ENCFF044GIB bed narrowPeak conservative idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF001TDO, ENCFF545UIM, ENCFF949TDA, ENCFF995FGG 233348 ENCODE Processing Pipeline 812e77c7934b90ede715926dfdbda1ed https://www.encodeproject.org/files/ENCFF044GIB/@@download/ENCFF044GIB.bed.gz hg19 released low read depth ENCFF227PWE bed narrowPeak optimal idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF001TDO, ENCFF545UIM, ENCFF949TDA, ENCFF995FGG 252775 ENCODE Processing Pipeline 123eb7f896c8a4e756af0971f159b1b6 https://www.encodeproject.org/files/ENCFF227PWE/@@download/ENCFF227PWE.bed.gz hg19 released low read depth ENCFF450FCD bigBed narrowPeak optimal idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF227PWE 598260 ENCODE Processing Pipeline 62a63a001ebeacbcb34fdccfbb117916 https://www.encodeproject.org/files/ENCFF450FCD/@@download/ENCFF450FCD.bigBed hg19 released low read depth ENCFF381UGG bigWig signal p-value ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF372RRO, ENCFF871ONC, ENCFF894EOG 830994447 ENCODE Processing Pipeline ae9d526c14e86a557e2510c6d78456bc https://www.encodeproject.org/files/ENCFF381UGG/@@download/ENCFF381UGG.bigWig GRCh38 released low read depth ENCFF909PEV bigWig signal p-value ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF370ZNH, ENCFF372RRO, ENCFF894EOG 905148141 ENCODE Processing Pipeline 0bd32f196b5a7e1be3408dae683521b0 https://www.encodeproject.org/files/ENCFF909PEV/@@download/ENCFF909PEV.bigWig GRCh38 released low read depth ENCFF700EFC bigWig signal p-value ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF370ZNH, ENCFF372RRO, ENCFF871ONC, ENCFF894EOG 1092761079 ENCODE Processing Pipeline 17377613e304b63dd9dad132c04396fd https://www.encodeproject.org/files/ENCFF700EFC/@@download/ENCFF700EFC.bigWig GRCh38 released low read depth ENCFF162JFF bigWig fold change over control ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF372RRO, ENCFF871ONC, ENCFF894EOG 651638951 ENCODE Processing Pipeline 52474953e1efce22c3b4da527313cf3a https://www.encodeproject.org/files/ENCFF162JFF/@@download/ENCFF162JFF.bigWig GRCh38 released low read depth ENCFF946NIQ bigWig fold change over control ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF370ZNH, ENCFF372RRO, ENCFF894EOG 843769885 ENCODE Processing Pipeline 2c4d5ccf39f15ca00c4a5f0e01b198ae https://www.encodeproject.org/files/ENCFF946NIQ/@@download/ENCFF946NIQ.bigWig GRCh38 released low read depth ENCFF422DYK bigWig fold change over control ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF370ZNH, ENCFF372RRO, ENCFF871ONC, ENCFF894EOG 1105475727 ENCODE Processing Pipeline 0d38c463aa57894d8303af7945bb80ce https://www.encodeproject.org/files/ENCFF422DYK/@@download/ENCFF422DYK.bigWig GRCh38 released low read depth ENCFF090SRG bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF370ZNH, ENCFF372RRO, ENCFF894EOG 6072229 ENCODE Processing Pipeline 8b04ee54a38a059984e8b9d040e73d7a https://www.encodeproject.org/files/ENCFF090SRG/@@download/ENCFF090SRG.bed.gz GRCh38 released low read depth ENCFF389QED bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF370ZNH, ENCFF372RRO, ENCFF871ONC, ENCFF894EOG 6604895 ENCODE Processing Pipeline 16ed25c85bbd0bc67bf0f8cd8cdf47cc https://www.encodeproject.org/files/ENCFF389QED/@@download/ENCFF389QED.bed.gz GRCh38 released low read depth ENCFF280UTT bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF372RRO, ENCFF871ONC, ENCFF894EOG 5850149 ENCODE Processing Pipeline 3e965a3cf8a5beedb49e30a7bf166b3a https://www.encodeproject.org/files/ENCFF280UTT/@@download/ENCFF280UTT.bed.gz GRCh38 released low read depth ENCFF368QOL bigBed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF280UTT 13513505 ENCODE Processing Pipeline e16676624d2bafd0339e395ec5a2e4cf https://www.encodeproject.org/files/ENCFF368QOL/@@download/ENCFF368QOL.bigBed GRCh38 released low read depth ENCFF010JQD bigBed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF090SRG 13445746 ENCODE Processing Pipeline ff82efcc0791b93ecb2cb02f57dfe342 https://www.encodeproject.org/files/ENCFF010JQD/@@download/ENCFF010JQD.bigBed GRCh38 released low read depth ENCFF966LGI bigBed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF389QED 13552013 ENCODE Processing Pipeline cd74ab88838de5cca5b6fc9abae6c675 https://www.encodeproject.org/files/ENCFF966LGI/@@download/ENCFF966LGI.bigBed GRCh38 released low read depth ENCFF860SGT bed narrowPeak conservative idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF090SRG, ENCFF280UTT, ENCFF389QED, ENCFF419RSJ 228790 ENCODE Processing Pipeline 71db69f5ac032e22835c1c32c1bb0d8b https://www.encodeproject.org/files/ENCFF860SGT/@@download/ENCFF860SGT.bed.gz GRCh38 released low read depth ENCFF800QTO bed narrowPeak optimal idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF090SRG, ENCFF280UTT, ENCFF389QED, ENCFF419RSJ 249650 ENCODE Processing Pipeline f18f2926570b10f09187264a7eb96774 https://www.encodeproject.org/files/ENCFF800QTO/@@download/ENCFF800QTO.bed.gz GRCh38 released low read depth ENCFF603HEN bigBed narrowPeak optimal idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF800QTO 486818 ENCODE Processing Pipeline 3d0f9785b3fd43c3a154f0bb4834cee6 https://www.encodeproject.org/files/ENCFF603HEN/@@download/ENCFF603HEN.bigBed GRCh38 released low read depth ENCFF998DEZ bigBed narrowPeak conservative idr thresholded peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF860SGT 456432 ENCODE Processing Pipeline 3dfaab1bf1e76021340e9eb9dd69ec57 https://www.encodeproject.org/files/ENCFF998DEZ/@@download/ENCFF998DEZ.bigBed GRCh38 released low read depth ENCFF409XOE fastq reads ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1146830256 Bradley Bernstein, Broad dc1f978b207eb9d3b5e4ba81cd829092 SRA:SRR5832810 https://www.encodeproject.org/files/ENCFF409XOE/@@download/ENCFF409XOE.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF701LMH fastq reads ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1576290502 Bradley Bernstein, Broad 2e25fd5b222028bb7de0b40be0a4ddfb SRA:SRR5832809 https://www.encodeproject.org/files/ENCFF701LMH/@@download/ENCFF701LMH.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF159PFM bam unfiltered alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF409XOE, ENCFF643CGH 1361393197 ENCODE Processing Pipeline c7008a16e6e0df60cb9d454aeee2bb96 https://www.encodeproject.org/files/ENCFF159PFM/@@download/ENCFF159PFM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF103HWK bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF409XOE, ENCFF643CGH 1066103310 ENCODE Processing Pipeline dac1953a7b906cec27f9eb8c09ea9345 https://www.encodeproject.org/files/ENCFF103HWK/@@download/ENCFF103HWK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF610CGY bam unfiltered alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF643CGH, ENCFF701LMH 1808670415 ENCODE Processing Pipeline 9483da6576aa5fa2d33bd1ca42e79a15 https://www.encodeproject.org/files/ENCFF610CGY/@@download/ENCFF610CGY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF806FPG bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF701LMH 1341341575 ENCODE Processing Pipeline 899fb4f3484760de5b78f22be3b06c1f https://www.encodeproject.org/files/ENCFF806FPG/@@download/ENCFF806FPG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF940WMV bam unfiltered alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF701LMH, ENCFF807MUK 1803749763 ENCODE Processing Pipeline 0a2655e890d8bf50f4d118acc27f8ee1 https://www.encodeproject.org/files/ENCFF940WMV/@@download/ENCFF940WMV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF450QXJ bam unfiltered alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF409XOE, ENCFF807MUK 1357569410 ENCODE Processing Pipeline 912870a61d87fdeae90b22f36b91bdd2 https://www.encodeproject.org/files/ENCFF450QXJ/@@download/ENCFF450QXJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF573RUL bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF409XOE, ENCFF807MUK 1065109372 ENCODE Processing Pipeline 9e20e8297df2889499544832d7a9fbe3 https://www.encodeproject.org/files/ENCFF573RUL/@@download/ENCFF573RUL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF553BBH bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF701LMH, ENCFF807MUK 1339887359 ENCODE Processing Pipeline 72f63ea70c2d17bc113d6155183b923a https://www.encodeproject.org/files/ENCFF553BBH/@@download/ENCFF553BBH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF016MLA bigWig signal p-value ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF103HWK, ENCFF572IKT, ENCFF714AMB, ENCFF806FPG 1161626524 ENCODE Processing Pipeline 20462cf5b1d25841b5ee1e528e8505ad https://www.encodeproject.org/files/ENCFF016MLA/@@download/ENCFF016MLA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF519XGR bigWig fold change over control ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF103HWK, ENCFF572IKT, ENCFF714AMB 891078022 ENCODE Processing Pipeline bc3cc9a3d6c7013b0f7e5414f5b8333d https://www.encodeproject.org/files/ENCFF519XGR/@@download/ENCFF519XGR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF593ORE bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF806FPG 5880353 ENCODE Processing Pipeline 08bd2b45efd2b7f7ec0e66bc25026056 https://www.encodeproject.org/files/ENCFF593ORE/@@download/ENCFF593ORE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF528YPX bigWig fold change over control ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF103HWK, ENCFF572IKT, ENCFF714AMB, ENCFF806FPG 1393648318 ENCODE Processing Pipeline 4210a6ed0fea2d16f73234434df0a297 https://www.encodeproject.org/files/ENCFF528YPX/@@download/ENCFF528YPX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF570FDP bigWig signal p-value ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF103HWK, ENCFF572IKT, ENCFF714AMB 1022229239 ENCODE Processing Pipeline 7c1d02bc98666b55a49f763cb087484e https://www.encodeproject.org/files/ENCFF570FDP/@@download/ENCFF570FDP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF440FIB bigWig signal p-value ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF806FPG 1145424947 ENCODE Processing Pipeline 0b85752428dd6b907b4680b149c391ed https://www.encodeproject.org/files/ENCFF440FIB/@@download/ENCFF440FIB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF556JQM bigBed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF593ORE 11408541 ENCODE Processing Pipeline c5ebf4f63331467912704a212eace6c3 https://www.encodeproject.org/files/ENCFF556JQM/@@download/ENCFF556JQM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF218KZC bigWig fold change over control ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF806FPG 1049072740 ENCODE Processing Pipeline f3b57f8f67098eb5ae070fc28eb33d54 https://www.encodeproject.org/files/ENCFF218KZC/@@download/ENCFF218KZC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF364YHS bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF103HWK, ENCFF572IKT, ENCFF714AMB, ENCFF806FPG 6534732 ENCODE Processing Pipeline 46ede10bbf4fd90b2cc7b0bd07a08e51 https://www.encodeproject.org/files/ENCFF364YHS/@@download/ENCFF364YHS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF620QVI bigBed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF992NYU 11414711 ENCODE Processing Pipeline 5cec2aefdb92bfc87db702fa6387123a https://www.encodeproject.org/files/ENCFF620QVI/@@download/ENCFF620QVI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF732DCA bed narrowPeak conservative idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364YHS, ENCFF419RSJ, ENCFF593ORE, ENCFF992NYU 2179 ENCODE Processing Pipeline ac1f8fc28e91ce3ba1592093477b0808 https://www.encodeproject.org/files/ENCFF732DCA/@@download/ENCFF732DCA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF992NYU bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF103HWK, ENCFF572IKT, ENCFF714AMB 5249853 ENCODE Processing Pipeline 04484b58ae503f7bc62306e534dbc1b5 https://www.encodeproject.org/files/ENCFF992NYU/@@download/ENCFF992NYU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF128KYO bigBed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364YHS 11407779 ENCODE Processing Pipeline 914919c5d36843eea3592b0c5bd20de6 https://www.encodeproject.org/files/ENCFF128KYO/@@download/ENCFF128KYO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF594ROG bigBed narrowPeak optimal idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF208AXT 41712 ENCODE Processing Pipeline 943f388843d53b539ce37ac1b63a33d9 https://www.encodeproject.org/files/ENCFF594ROG/@@download/ENCFF594ROG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF208AXT bed narrowPeak optimal idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364YHS, ENCFF419RSJ, ENCFF593ORE, ENCFF992NYU 2531 ENCODE Processing Pipeline ff0cdc45967634dd3006bf1345b7fd27 https://www.encodeproject.org/files/ENCFF208AXT/@@download/ENCFF208AXT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF841TEU bigBed narrowPeak conservative idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF732DCA 81993 ENCODE Processing Pipeline 150704ac775a5e9f0c9c6fb84777a58c https://www.encodeproject.org/files/ENCFF841TEU/@@download/ENCFF841TEU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF961LFU bigBed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF231ONX 11413662 ENCODE Processing Pipeline 8e056a33222c89472e39f1213ee2d84c https://www.encodeproject.org/files/ENCFF961LFU/@@download/ENCFF961LFU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF795CSD bigWig fold change over control ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF553BBH, ENCFF801GGG, ENCFF881DVS 1031350637 ENCODE Processing Pipeline 401d76f8e241af89a308267ad2fd6a0a https://www.encodeproject.org/files/ENCFF795CSD/@@download/ENCFF795CSD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF252YGU bigWig signal p-value ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 1000760402 ENCODE Processing Pipeline 0bedaa5fe0c9694f71aa4cd717a22465 https://www.encodeproject.org/files/ENCFF252YGU/@@download/ENCFF252YGU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF056NJU bigWig fold change over control ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 892884506 ENCODE Processing Pipeline e97109077cfdf2fdf72569f7b7a2a9c9 https://www.encodeproject.org/files/ENCFF056NJU/@@download/ENCFF056NJU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF322ADA bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF553BBH, ENCFF801GGG, ENCFF881DVS 5923710 ENCODE Processing Pipeline d165c2b218458189ddd63df0db8f3f1d https://www.encodeproject.org/files/ENCFF322ADA/@@download/ENCFF322ADA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF105KQU bigBed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF322ADA 11362385 ENCODE Processing Pipeline 1827719e89ee4b2e00e9451784b74fe8 https://www.encodeproject.org/files/ENCFF105KQU/@@download/ENCFF105KQU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF754DJY bed narrowPeak conservative idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF231ONX, ENCFF322ADA, ENCFF679JWK 1640 ENCODE Processing Pipeline 811593eb9af433f17fe04ebca56340f4 https://www.encodeproject.org/files/ENCFF754DJY/@@download/ENCFF754DJY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF002GNW bigWig fold change over control ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF553BBH, ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 1381533347 ENCODE Processing Pipeline 4f0aa5b423188769592138fdbf665ef0 https://www.encodeproject.org/files/ENCFF002GNW/@@download/ENCFF002GNW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF679JWK bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF553BBH, ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 6641324 ENCODE Processing Pipeline 89f694b7429e753725ade68969b1aa2c https://www.encodeproject.org/files/ENCFF679JWK/@@download/ENCFF679JWK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF628ZXK bigWig signal p-value ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF553BBH, ENCFF801GGG, ENCFF881DVS 1071658963 ENCODE Processing Pipeline 44bdab6544fdeb8a06cddaf13a02eef0 https://www.encodeproject.org/files/ENCFF628ZXK/@@download/ENCFF628ZXK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF604RJF bigWig signal p-value ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF553BBH, ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 1399706944 ENCODE Processing Pipeline 7d98f7187ad39fca5707026ad65b426f https://www.encodeproject.org/files/ENCFF604RJF/@@download/ENCFF604RJF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF231ONX bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 5378132 ENCODE Processing Pipeline dd14072d52e4d4bfa945c74759f9704a https://www.encodeproject.org/files/ENCFF231ONX/@@download/ENCFF231ONX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF690ZDB bigBed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF679JWK 13525117 ENCODE Processing Pipeline 7c13b03d84099433d07d8b272ae72f96 https://www.encodeproject.org/files/ENCFF690ZDB/@@download/ENCFF690ZDB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF015MKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF070KLR 25627 ENCODE Processing Pipeline 49bd5288a4c1950038a5673160cbbe3b https://www.encodeproject.org/files/ENCFF015MKZ/@@download/ENCFF015MKZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF070KLR bed narrowPeak optimal idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF231ONX, ENCFF322ADA, ENCFF679JWK 2093 ENCODE Processing Pipeline d26bfbc9614cda52c378710f0fde1c01 https://www.encodeproject.org/files/ENCFF070KLR/@@download/ENCFF070KLR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF998GUE bigBed narrowPeak conservative idr thresholded peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF754DJY 24873 ENCODE Processing Pipeline c043c9a3c63e00ec11192bcf33de3c2c https://www.encodeproject.org/files/ENCFF998GUE/@@download/ENCFF998GUE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF934JOM fastq reads ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1449056550 Richard Myers, HAIB e312f5da1204ee931900d3bfbfbfaa44 SRA:SRR5339683 https://www.encodeproject.org/files/ENCFF934JOM/@@download/ENCFF934JOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released antibody characterized with exemption biological replicates with identical biosample ENCFF546JVU fastq reads ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1443724703 Richard Myers, HAIB 4766b732e6775074e8c9b3a7e6a75d64 SRA:SRR5339682 https://www.encodeproject.org/files/ENCFF546JVU/@@download/ENCFF546JVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released antibody characterized with exemption biological replicates with identical biosample ENCFF716ZAN bam unfiltered alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF546JVU, ENCFF643CGH 1655187051 ENCODE Processing Pipeline 77fa1a3e7a8f8d1f2d5366698cf334f5 https://www.encodeproject.org/files/ENCFF716ZAN/@@download/ENCFF716ZAN.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF935CYM bam unfiltered alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF934JOM 1624763436 ENCODE Processing Pipeline b661193afd7a9bf765791351ed0979ec https://www.encodeproject.org/files/ENCFF935CYM/@@download/ENCFF935CYM.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF661JYQ bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF934JOM 1237242463 ENCODE Processing Pipeline 9e3a064b96c7a768b5b8032afba6befe https://www.encodeproject.org/files/ENCFF661JYQ/@@download/ENCFF661JYQ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF777LFU bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF546JVU, ENCFF643CGH 1241469842 ENCODE Processing Pipeline 9977e4aaeb153437bf677a64c1317c64 https://www.encodeproject.org/files/ENCFF777LFU/@@download/ENCFF777LFU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF793NUR bigWig signal p-value ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF777LFU, ENCFF995OIG 1034532994 ENCODE Processing Pipeline 8878e63dc3869b63884d9dd2565734cb https://www.encodeproject.org/files/ENCFF793NUR/@@download/ENCFF793NUR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF639QYL bigWig signal p-value ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF661JYQ, ENCFF995OIG 988951786 ENCODE Processing Pipeline 6000b39fe032bcaedbaab608002cf135 https://www.encodeproject.org/files/ENCFF639QYL/@@download/ENCFF639QYL.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF076MZM bigWig signal p-value ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF661JYQ, ENCFF777LFU, ENCFF995OIG 1370838950 ENCODE Processing Pipeline a9464639d8b301f3417be219a6e25512 https://www.encodeproject.org/files/ENCFF076MZM/@@download/ENCFF076MZM.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF617PAE bigWig fold change over control ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF777LFU, ENCFF995OIG 937441652 ENCODE Processing Pipeline 48c969f11013d8fa79387f2b2fb15876 https://www.encodeproject.org/files/ENCFF617PAE/@@download/ENCFF617PAE.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF348WKR bigWig fold change over control ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF661JYQ, ENCFF995OIG 958506200 ENCODE Processing Pipeline a625cf907906433a87c05809220bce9a https://www.encodeproject.org/files/ENCFF348WKR/@@download/ENCFF348WKR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF305OHM bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF661JYQ, ENCFF995OIG 6470150 ENCODE Processing Pipeline bb876c221c6c7259bf31fa94c3d20bbc https://www.encodeproject.org/files/ENCFF305OHM/@@download/ENCFF305OHM.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF598JFL bigBed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF327VVW 13499932 ENCODE Processing Pipeline b88596c72b22da88efe9bff5781f26a6 https://www.encodeproject.org/files/ENCFF598JFL/@@download/ENCFF598JFL.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF138OAF bed narrowPeak conservative idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF305OHM, ENCFF327VVW, ENCFF392UBG, ENCFF419RSJ 502296 ENCODE Processing Pipeline a7adce214a78431210ab18723e62ffa2 https://www.encodeproject.org/files/ENCFF138OAF/@@download/ENCFF138OAF.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF964SBO bigWig fold change over control ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF661JYQ, ENCFF777LFU, ENCFF995OIG 1407827782 ENCODE Processing Pipeline 7ee769840cc711ee45a2bed3ffab8470 https://www.encodeproject.org/files/ENCFF964SBO/@@download/ENCFF964SBO.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF204LQH bigBed narrowPeak conservative idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF138OAF 984879 ENCODE Processing Pipeline 97f334833c6e56e20c6941a9c69905c0 https://www.encodeproject.org/files/ENCFF204LQH/@@download/ENCFF204LQH.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF493ZMX bed narrowPeak optimal idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF305OHM, ENCFF327VVW, ENCFF392UBG, ENCFF419RSJ 548527 ENCODE Processing Pipeline 6e2ac0318546b631d9cd9d0ddb90dd48 https://www.encodeproject.org/files/ENCFF493ZMX/@@download/ENCFF493ZMX.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF367CVU bigBed narrowPeak optimal idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF493ZMX 1057438 ENCODE Processing Pipeline 5843195d13c04ecf6fb7349a0ed67e50 https://www.encodeproject.org/files/ENCFF367CVU/@@download/ENCFF367CVU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF392UBG bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF661JYQ, ENCFF777LFU, ENCFF995OIG 6946208 ENCODE Processing Pipeline 5a3c4bc5fc87620388fa673eeb2fbe12 https://www.encodeproject.org/files/ENCFF392UBG/@@download/ENCFF392UBG.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF138RLS bigBed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF305OHM 13441484 ENCODE Processing Pipeline 8331cb434709b51ade2db9ba87a9b30c https://www.encodeproject.org/files/ENCFF138RLS/@@download/ENCFF138RLS.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF327VVW bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF370PSF, ENCFF777LFU, ENCFF995OIG 6434683 ENCODE Processing Pipeline d9e4858105871021cef0ff283ab5bb67 https://www.encodeproject.org/files/ENCFF327VVW/@@download/ENCFF327VVW.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF913DUU bigBed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF392UBG 13405018 ENCODE Processing Pipeline 702e75d9cec3d799b0fa4bd809601d5d https://www.encodeproject.org/files/ENCFF913DUU/@@download/ENCFF913DUU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF520IDM bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF934JOM 1237165199 ENCODE Processing Pipeline b054e86b0ddfe0b4d1360e0f4162a5ab https://www.encodeproject.org/files/ENCFF520IDM/@@download/ENCFF520IDM.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF668CFX bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF546JVU, ENCFF807MUK 1241365854 ENCODE Processing Pipeline 9fc9d9da441a31a5e9e35fc3ec476599 https://www.encodeproject.org/files/ENCFF668CFX/@@download/ENCFF668CFX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF120PRI bam unfiltered alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF546JVU, ENCFF807MUK 1646956624 ENCODE Processing Pipeline b34b6c7b255d2f5fb98bbdb3a1bea761 https://www.encodeproject.org/files/ENCFF120PRI/@@download/ENCFF120PRI.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF536MMC bam unfiltered alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF934JOM 1616741636 ENCODE Processing Pipeline b9b6282d142d24041e8b54ed1aa3e434 https://www.encodeproject.org/files/ENCFF536MMC/@@download/ENCFF536MMC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF492YSU bigWig signal p-value ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 1001245241 ENCODE Processing Pipeline 9f3567da68199bd18a870a6a624858ba https://www.encodeproject.org/files/ENCFF492YSU/@@download/ENCFF492YSU.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF804BST bigWig signal p-value ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF520IDM, ENCFF654EHF, ENCFF991UTU 1106811027 ENCODE Processing Pipeline e23c28a58430e14a25509897dc200c23 https://www.encodeproject.org/files/ENCFF804BST/@@download/ENCFF804BST.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF116HWO bigWig signal p-value ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF520IDM, ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 1167675681 ENCODE Processing Pipeline e1ce55cd3419e4c01023012c779b42ae https://www.encodeproject.org/files/ENCFF116HWO/@@download/ENCFF116HWO.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF776UCD bigWig fold change over control ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF520IDM, ENCFF654EHF, ENCFF991UTU 938831503 ENCODE Processing Pipeline 21ae022f1c81869a8ff64b79c4246f57 https://www.encodeproject.org/files/ENCFF776UCD/@@download/ENCFF776UCD.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF120ODV bigWig fold change over control ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 875555441 ENCODE Processing Pipeline 8109672ebd86c805bf20bf6d7b7c693c https://www.encodeproject.org/files/ENCFF120ODV/@@download/ENCFF120ODV.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF151FBW bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 6402451 ENCODE Processing Pipeline 84f3ade497df8a9e049d1fd7c1295c5b https://www.encodeproject.org/files/ENCFF151FBW/@@download/ENCFF151FBW.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF810FLM bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF520IDM, ENCFF654EHF, ENCFF991UTU 6491970 ENCODE Processing Pipeline e3e312be3c9440fd1362b9698a943da2 https://www.encodeproject.org/files/ENCFF810FLM/@@download/ENCFF810FLM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF981QWW bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF520IDM, ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 6973620 ENCODE Processing Pipeline a4abc862fc32797ca322d2e6e88da034 https://www.encodeproject.org/files/ENCFF981QWW/@@download/ENCFF981QWW.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF267DOX bigBed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF151FBW 13419292 ENCODE Processing Pipeline e2535946c20ddb0151963d2c9c64126f https://www.encodeproject.org/files/ENCFF267DOX/@@download/ENCFF267DOX.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF370ZNN bigWig fold change over control ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF520IDM, ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 1386499166 ENCODE Processing Pipeline b62c65b866d5885a8df9e5c834a098fd https://www.encodeproject.org/files/ENCFF370ZNN/@@download/ENCFF370ZNN.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF399DQN bed narrowPeak conservative idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF151FBW, ENCFF810FLM, ENCFF981QWW 515748 ENCODE Processing Pipeline 370f4f95255ab335de9e222e2507b323 https://www.encodeproject.org/files/ENCFF399DQN/@@download/ENCFF399DQN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF739RMG bigBed narrowPeak optimal idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF840NOO 1054469 ENCODE Processing Pipeline 2999346315758828a72970969f82fdc7 https://www.encodeproject.org/files/ENCFF739RMG/@@download/ENCFF739RMG.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF897PXN bigBed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF810FLM 13460648 ENCODE Processing Pipeline f0a3d2db3f2323c64ecbb6b99441bb2b https://www.encodeproject.org/files/ENCFF897PXN/@@download/ENCFF897PXN.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF251WLF bigBed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF981QWW 13439472 ENCODE Processing Pipeline a4ce8aafcede81c7b0221dbb219dbade https://www.encodeproject.org/files/ENCFF251WLF/@@download/ENCFF251WLF.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF485QTO bigBed narrowPeak conservative idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF399DQN 1001550 ENCODE Processing Pipeline 784c8710209e187aa0f495bf47ac7236 https://www.encodeproject.org/files/ENCFF485QTO/@@download/ENCFF485QTO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF840NOO bed narrowPeak optimal idr thresholded peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF151FBW, ENCFF810FLM, ENCFF981QWW 547666 ENCODE Processing Pipeline 9e7471dd4ce8fad320cb14b095049694 https://www.encodeproject.org/files/ENCFF840NOO/@@download/ENCFF840NOO.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF039EYW fastq reads ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1361221373 Richard Myers, HAIB 09ea9697110ddbba379b31c55d837b15 SRA:SRR5331161 https://www.encodeproject.org/files/ENCFF039EYW/@@download/ENCFF039EYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF123QZN/ released antibody characterized with exemption biological replicates with identical biosample ENCFF888RXZ fastq reads ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1066817761 Richard Myers, HAIB df0baf2aea39b827965f631846225b19 SRA:SRR5331162 https://www.encodeproject.org/files/ENCFF888RXZ/@@download/ENCFF888RXZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample ENCFF009IDY bam unfiltered alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 50 ENCFF039EYW, ENCFF643CGH 1487257668 ENCODE Processing Pipeline b835d5a620fb497107cdbb0c4a8c9882 https://www.encodeproject.org/files/ENCFF009IDY/@@download/ENCFF009IDY.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF177GCV bam unfiltered alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF888RXZ 1204379591 ENCODE Processing Pipeline a84a7470b529018f29f5bff53050f0d1 https://www.encodeproject.org/files/ENCFF177GCV/@@download/ENCFF177GCV.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF417QDU bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF888RXZ 911729109 ENCODE Processing Pipeline 99fd38323ac763769130f46b58fcddfb https://www.encodeproject.org/files/ENCFF417QDU/@@download/ENCFF417QDU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF632BNR bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 50 ENCFF039EYW, ENCFF643CGH 1102668684 ENCODE Processing Pipeline 4f514465c6235a6a8d89b267f313f31c https://www.encodeproject.org/files/ENCFF632BNR/@@download/ENCFF632BNR.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF166KNH bigWig signal p-value ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF610PNU, ENCFF632BNR 872989533 ENCODE Processing Pipeline bec2829cf05faa0ff72db8a305061910 https://www.encodeproject.org/files/ENCFF166KNH/@@download/ENCFF166KNH.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF246WEK bigWig signal p-value ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF337WHA, ENCFF417QDU, ENCFF610PNU, ENCFF632BNR 1134123170 ENCODE Processing Pipeline dcc595fc01a3ff32befdb8e23005a706 https://www.encodeproject.org/files/ENCFF246WEK/@@download/ENCFF246WEK.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF053MGY bigWig fold change over control ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF610PNU, ENCFF632BNR 819075451 ENCODE Processing Pipeline 33307f8a4265b5ae9055cd3bcd279f2d https://www.encodeproject.org/files/ENCFF053MGY/@@download/ENCFF053MGY.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF745YIN bigWig fold change over control ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF337WHA, ENCFF417QDU, ENCFF610PNU, ENCFF632BNR 1134118335 ENCODE Processing Pipeline 5c8051f6133415606b9996f188b7f5a8 https://www.encodeproject.org/files/ENCFF745YIN/@@download/ENCFF745YIN.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF336UMV bigWig signal p-value ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF337WHA, ENCFF417QDU, ENCFF610PNU 780900194 ENCODE Processing Pipeline 5aa0d42e1e0ff5c32e6436ac82ac71e3 https://www.encodeproject.org/files/ENCFF336UMV/@@download/ENCFF336UMV.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF438FIR bigWig fold change over control ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF337WHA, ENCFF417QDU, ENCFF610PNU 701760847 ENCODE Processing Pipeline d5ad2e60a0b749edb9d908d0acf01ab9 https://www.encodeproject.org/files/ENCFF438FIR/@@download/ENCFF438FIR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF783YGC bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF337WHA, ENCFF417QDU, ENCFF610PNU, ENCFF632BNR 6781608 ENCODE Processing Pipeline 93434e2ce7cf856551904850d21ebf5d https://www.encodeproject.org/files/ENCFF783YGC/@@download/ENCFF783YGC.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF462XAK bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF337WHA, ENCFF610PNU, ENCFF632BNR 6357773 ENCODE Processing Pipeline 3838270032b50367a46216d29e53c9ec https://www.encodeproject.org/files/ENCFF462XAK/@@download/ENCFF462XAK.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF285JQX bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF337WHA, ENCFF417QDU, ENCFF610PNU 5878511 ENCODE Processing Pipeline 1ed726c8271ce9da4054ea7d6c340353 https://www.encodeproject.org/files/ENCFF285JQX/@@download/ENCFF285JQX.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF828VVA bigBed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF462XAK 13420805 ENCODE Processing Pipeline 87e8abe233922a971198fcc231e5da27 https://www.encodeproject.org/files/ENCFF828VVA/@@download/ENCFF828VVA.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF950JZU bigBed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF285JQX 13530717 ENCODE Processing Pipeline 91f6c8a6085d21c5984fd363bca3aff3 https://www.encodeproject.org/files/ENCFF950JZU/@@download/ENCFF950JZU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF286SHU bigBed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF783YGC 13538333 ENCODE Processing Pipeline bfa23ca932279e8301b9964e743b62d0 https://www.encodeproject.org/files/ENCFF286SHU/@@download/ENCFF286SHU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF997IFW bed narrowPeak conservative idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF285JQX, ENCFF419RSJ, ENCFF462XAK, ENCFF783YGC 330739 ENCODE Processing Pipeline 6b50e99962c9970d27783249ff8b35e8 https://www.encodeproject.org/files/ENCFF997IFW/@@download/ENCFF997IFW.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF404OXL bigBed narrowPeak optimal idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF280YAF 790085 ENCODE Processing Pipeline 0f064d7fbd38caa9acd825aadac5ad79 https://www.encodeproject.org/files/ENCFF404OXL/@@download/ENCFF404OXL.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF240YJO bigBed narrowPeak conservative idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF997IFW 720287 ENCODE Processing Pipeline 88a87a2e8dd8b24eb1a5435f364767ce https://www.encodeproject.org/files/ENCFF240YJO/@@download/ENCFF240YJO.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF280YAF bed narrowPeak optimal idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF285JQX, ENCFF419RSJ, ENCFF462XAK, ENCFF783YGC 374538 ENCODE Processing Pipeline 13a46712fa63158110b4c61ac46a2e30 https://www.encodeproject.org/files/ENCFF280YAF/@@download/ENCFF280YAF.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF224EXH bam unfiltered alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF888RXZ 1197933624 ENCODE Processing Pipeline 5b14b3bd882647d2f2c5d7f30749df38 https://www.encodeproject.org/files/ENCFF224EXH/@@download/ENCFF224EXH.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF432HQR bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF888RXZ 911681757 ENCODE Processing Pipeline beac418c938d7f76e973fe591858154d https://www.encodeproject.org/files/ENCFF432HQR/@@download/ENCFF432HQR.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF274NHB bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 50 ENCFF039EYW, ENCFF807MUK 1102592311 ENCODE Processing Pipeline ff4bdb98674501b27ed6408eee98508a https://www.encodeproject.org/files/ENCFF274NHB/@@download/ENCFF274NHB.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF747XZN bam unfiltered alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 50 ENCFF039EYW, ENCFF807MUK 1479719915 ENCODE Processing Pipeline 7b60591133bd1d7362c203265b1049e3 https://www.encodeproject.org/files/ENCFF747XZN/@@download/ENCFF747XZN.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF982ORD bigWig signal p-value ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF432HQR 818993787 ENCODE Processing Pipeline ec92d15c971798bc18a3c0120c91f2f1 https://www.encodeproject.org/files/ENCFF982ORD/@@download/ENCFF982ORD.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF972RHW bigWig signal p-value ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV 895916808 ENCODE Processing Pipeline 3cb1a3d41cae05de5e4f9b498b5cafb3 https://www.encodeproject.org/files/ENCFF972RHW/@@download/ENCFF972RHW.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF348DKK bigWig signal p-value ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV, ENCFF432HQR 1081602667 ENCODE Processing Pipeline ece83c484a98c1e72ee5f352d4919903 https://www.encodeproject.org/files/ENCFF348DKK/@@download/ENCFF348DKK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF979KJL bigWig fold change over control ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF432HQR 694141921 ENCODE Processing Pipeline 6379df15d2672acd5658b93e01ec568c https://www.encodeproject.org/files/ENCFF979KJL/@@download/ENCFF979KJL.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF085LGD bigWig fold change over control ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV, ENCFF432HQR 1133496009 ENCODE Processing Pipeline cd3649b489e385f28ce6244b83edfe08 https://www.encodeproject.org/files/ENCFF085LGD/@@download/ENCFF085LGD.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF732GQK bigWig fold change over control ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV 812655729 ENCODE Processing Pipeline 843c5c54fef07aa90373913de13701b4 https://www.encodeproject.org/files/ENCFF732GQK/@@download/ENCFF732GQK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF045GWC bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF432HQR 5893336 ENCODE Processing Pipeline bcfd36c5f953f44313654a6c3757e8b7 https://www.encodeproject.org/files/ENCFF045GWC/@@download/ENCFF045GWC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF928ABW bigBed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF045GWC 13536965 ENCODE Processing Pipeline 05fb7ac6fb3e90ee75a5de2c2a84760e https://www.encodeproject.org/files/ENCFF928ABW/@@download/ENCFF928ABW.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF634EKL bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV 6358957 ENCODE Processing Pipeline 73c23b4202dccbc449bc25713a56cbd7 https://www.encodeproject.org/files/ENCFF634EKL/@@download/ENCFF634EKL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF957WCX bed narrowPeak conservative idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF045GWC, ENCFF556UZM, ENCFF634EKL 329492 ENCODE Processing Pipeline b5e942e671b03f1fdf44bf8178ff51df https://www.encodeproject.org/files/ENCFF957WCX/@@download/ENCFF957WCX.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF556UZM bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV, ENCFF432HQR 6779898 ENCODE Processing Pipeline 6372b0be6b3fb7b14154739e92a81609 https://www.encodeproject.org/files/ENCFF556UZM/@@download/ENCFF556UZM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF743SGB bigBed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF634EKL 13409602 ENCODE Processing Pipeline b6636d614af9aed2ba40fb97a88a91e6 https://www.encodeproject.org/files/ENCFF743SGB/@@download/ENCFF743SGB.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF025XSA bigBed narrowPeak optimal idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF258PIW 779990 ENCODE Processing Pipeline 7b729cab5e331374be8048a27f753912 https://www.encodeproject.org/files/ENCFF025XSA/@@download/ENCFF025XSA.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF400IEC bigBed narrowPeak conservative idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF957WCX 716144 ENCODE Processing Pipeline be8f396dcf5d3f886ea7bc509964a25f https://www.encodeproject.org/files/ENCFF400IEC/@@download/ENCFF400IEC.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF258PIW bed narrowPeak optimal idr thresholded peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF045GWC, ENCFF556UZM, ENCFF634EKL 369257 ENCODE Processing Pipeline 95e75578d1c167b5e7e081f192c5011b https://www.encodeproject.org/files/ENCFF258PIW/@@download/ENCFF258PIW.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF763PBY bigBed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF556UZM 13528929 ENCODE Processing Pipeline 1127324a2a4492ac82e794edbaa29d13 https://www.encodeproject.org/files/ENCFF763PBY/@@download/ENCFF763PBY.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF425OTY fastq reads ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF432ECI 3854863366 Michael Snyder, Stanford a7b0fbf537fed0fb2c1bc775df1d1bd1 https://www.encodeproject.org/files/ENCFF425OTY/@@download/ENCFF425OTY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF432ECI fastq reads ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF425OTY 3857769099 Michael Snyder, Stanford 2a476b8d64d5288883c43e132426529f https://www.encodeproject.org/files/ENCFF432ECI/@@download/ENCFF432ECI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF403AAR fastq reads ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF783FQX 3003307218 Michael Snyder, Stanford 9b08d3762cdedb2de04e41c4a36ef308 https://www.encodeproject.org/files/ENCFF403AAR/@@download/ENCFF403AAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF783FQX fastq reads ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF403AAR 3006087307 Michael Snyder, Stanford 48141a7a9119720756efde8c56d30fab https://www.encodeproject.org/files/ENCFF783FQX/@@download/ENCFF783FQX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF891FDY bam unfiltered alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF403AAR, ENCFF643CGH, ENCFF783FQX 6397578400 ENCODE Processing Pipeline 5dd98aaaeee78f7c0c47bdc18d99aff9 https://www.encodeproject.org/files/ENCFF891FDY/@@download/ENCFF891FDY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF296ZSW bam unfiltered alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF425OTY, ENCFF432ECI, ENCFF643CGH 8185842288 ENCODE Processing Pipeline ebc72bc8a58a888c3367caeaea0eaec4 https://www.encodeproject.org/files/ENCFF296ZSW/@@download/ENCFF296ZSW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF958FJQ bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF403AAR, ENCFF643CGH, ENCFF783FQX 4821660093 ENCODE Processing Pipeline e9902ad0aa8630e825e51105af8ba536 https://www.encodeproject.org/files/ENCFF958FJQ/@@download/ENCFF958FJQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF894WFT bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF425OTY, ENCFF432ECI, ENCFF643CGH 6172470631 ENCODE Processing Pipeline c17c42d8193c33abfcab669553bccd6e https://www.encodeproject.org/files/ENCFF894WFT/@@download/ENCFF894WFT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF131SMU bigBed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF692EHK 11059611 ENCODE Processing Pipeline 338c5667f9e69201317d83dcfb2d5ca5 https://www.encodeproject.org/files/ENCFF131SMU/@@download/ENCFF131SMU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF740NGO bigWig signal p-value ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF894WFT, ENCFF910IKB, ENCFF958FJQ 2204299129 ENCODE Processing Pipeline 22012412aa7f76ed903823d643872e78 https://www.encodeproject.org/files/ENCFF740NGO/@@download/ENCFF740NGO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF977ESB bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF958FJQ 6287750 ENCODE Processing Pipeline de152afa92581d408682dc704ad01fe1 https://www.encodeproject.org/files/ENCFF977ESB/@@download/ENCFF977ESB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF043NKW bigWig signal p-value ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF894WFT, ENCFF910IKB 1391899833 ENCODE Processing Pipeline cf2cab574f9c1cf77e3463e5aa15b08a https://www.encodeproject.org/files/ENCFF043NKW/@@download/ENCFF043NKW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF206OVQ bigWig signal p-value ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF958FJQ 1110092604 ENCODE Processing Pipeline e707ffa69360ce3acfb51612ca2d13b1 https://www.encodeproject.org/files/ENCFF206OVQ/@@download/ENCFF206OVQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF862CTF bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF894WFT, ENCFF910IKB 6465482 ENCODE Processing Pipeline 541773eeb94e712aaaafb3e2eea81c1a https://www.encodeproject.org/files/ENCFF862CTF/@@download/ENCFF862CTF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF541VGR bigBed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF977ESB 11116295 ENCODE Processing Pipeline 942e78974d502656bdb8b29a1947bfdb https://www.encodeproject.org/files/ENCFF541VGR/@@download/ENCFF541VGR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF938GHN bigBed narrowPeak conservative idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF176RLH 97683 ENCODE Processing Pipeline c048f0b1b21f95ef5885fc5fe2b50912 https://www.encodeproject.org/files/ENCFF938GHN/@@download/ENCFF938GHN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF749HKV bed narrowPeak optimal idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF692EHK, ENCFF862CTF, ENCFF977ESB 57498 ENCODE Processing Pipeline e8091a198d607ff061a1a8ec86192d37 https://www.encodeproject.org/files/ENCFF749HKV/@@download/ENCFF749HKV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF775UHP bigWig fold change over control ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF894WFT, ENCFF910IKB 1434420532 ENCODE Processing Pipeline 896a92d331c2f21d309b90da99fc2d18 https://www.encodeproject.org/files/ENCFF775UHP/@@download/ENCFF775UHP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF835XJJ bigWig fold change over control ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF894WFT, ENCFF910IKB, ENCFF958FJQ 2277371592 ENCODE Processing Pipeline abeff499254a64ffbc1201e5ec38fd03 https://www.encodeproject.org/files/ENCFF835XJJ/@@download/ENCFF835XJJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF692EHK bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF894WFT, ENCFF910IKB, ENCFF958FJQ 7126853 ENCODE Processing Pipeline 6958cbb77d3761a210caf2770f19cf9c https://www.encodeproject.org/files/ENCFF692EHK/@@download/ENCFF692EHK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF981VCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF749HKV 144049 ENCODE Processing Pipeline 71e98a189c5105a1bbd595dcb3fe9ca8 https://www.encodeproject.org/files/ENCFF981VCQ/@@download/ENCFF981VCQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF907EFN bigWig fold change over control ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF958FJQ 1215354866 ENCODE Processing Pipeline a71d0bbb675a64d086fc45ddd234ee13 https://www.encodeproject.org/files/ENCFF907EFN/@@download/ENCFF907EFN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF125HMX bigBed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF862CTF 11149403 ENCODE Processing Pipeline 78680ec1b96b53afeefd8abc6b34cf18 https://www.encodeproject.org/files/ENCFF125HMX/@@download/ENCFF125HMX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF176RLH bed narrowPeak conservative idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF692EHK, ENCFF862CTF, ENCFF977ESB 25496 ENCODE Processing Pipeline 928580f21d18e571b974ae9eb85dac7f https://www.encodeproject.org/files/ENCFF176RLH/@@download/ENCFF176RLH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF721BQE bam unfiltered alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF403AAR, ENCFF783FQX, ENCFF807MUK 6394589615 ENCODE Processing Pipeline bc0e94e028666db1aef53877a9eeaf42 https://www.encodeproject.org/files/ENCFF721BQE/@@download/ENCFF721BQE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF021KML bam unfiltered alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF425OTY, ENCFF432ECI, ENCFF807MUK 8182464564 ENCODE Processing Pipeline e026c224c4b34b2e9383141be0f27cee https://www.encodeproject.org/files/ENCFF021KML/@@download/ENCFF021KML.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF139XLL bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF403AAR, ENCFF783FQX, ENCFF807MUK 4819891801 ENCODE Processing Pipeline 9ea7e0c7cf847813c98072e7516e5af0 https://www.encodeproject.org/files/ENCFF139XLL/@@download/ENCFF139XLL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF662JKA bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF425OTY, ENCFF432ECI, ENCFF807MUK 6168359310 ENCODE Processing Pipeline 85a895662ebbbe37453b7bc4965b7f4f https://www.encodeproject.org/files/ENCFF662JKA/@@download/ENCFF662JKA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF370QWE bigWig signal p-value ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF662JKA 1174234229 ENCODE Processing Pipeline 04cc1668d4c26f0c9c6e5c1ff8b3c2d9 https://www.encodeproject.org/files/ENCFF370QWE/@@download/ENCFF370QWE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF004MYR bigWig signal p-value ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF139XLL 994228440 ENCODE Processing Pipeline e7dc1c7f2aa7f4fa0e31bead84ee0ad3 https://www.encodeproject.org/files/ENCFF004MYR/@@download/ENCFF004MYR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF674PYA bigWig signal p-value ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF139XLL, ENCFF581ZJL, ENCFF662JKA 2155488929 ENCODE Processing Pipeline 4bcd690b5cc1e3dfabd8ec358a6b5886 https://www.encodeproject.org/files/ENCFF674PYA/@@download/ENCFF674PYA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF353VGO bigWig fold change over control ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF139XLL 1213917923 ENCODE Processing Pipeline 5fe118f3f0e6d0626d0b8bee4a673ef3 https://www.encodeproject.org/files/ENCFF353VGO/@@download/ENCFF353VGO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF347OPC bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF662JKA 6464701 ENCODE Processing Pipeline f86de4c42db0714237a30fc9780fad85 https://www.encodeproject.org/files/ENCFF347OPC/@@download/ENCFF347OPC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF960NYB bigWig fold change over control ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF662JKA 1413520135 ENCODE Processing Pipeline 6027b170a4a0352798e8ced8b95905cb https://www.encodeproject.org/files/ENCFF960NYB/@@download/ENCFF960NYB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF452BMC bigWig fold change over control ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF139XLL, ENCFF581ZJL, ENCFF662JKA 2287784484 ENCODE Processing Pipeline dc2bf1c881d008e3437060284b0c870d https://www.encodeproject.org/files/ENCFF452BMC/@@download/ENCFF452BMC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF048BXR bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF139XLL, ENCFF581ZJL, ENCFF662JKA 7122321 ENCODE Processing Pipeline 90d0b0bde2c91fd0e4f211762ca4d2cd https://www.encodeproject.org/files/ENCFF048BXR/@@download/ENCFF048BXR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF074DBO bed narrowPeak conservative idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF048BXR, ENCFF347OPC, ENCFF605EKW 24947 ENCODE Processing Pipeline f6d9be12f02260e779574c8dafc22c5f https://www.encodeproject.org/files/ENCFF074DBO/@@download/ENCFF074DBO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF495CSO bed narrowPeak optimal idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF048BXR, ENCFF347OPC, ENCFF605EKW 59229 ENCODE Processing Pipeline 83e3f77aa68bfdcc985baff44820a155 https://www.encodeproject.org/files/ENCFF495CSO/@@download/ENCFF495CSO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF605EKW bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF139XLL 6259856 ENCODE Processing Pipeline 71de1c7e0910843bf3eee383285b2c79 https://www.encodeproject.org/files/ENCFF605EKW/@@download/ENCFF605EKW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF429TOK bigBed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF347OPC 11133346 ENCODE Processing Pipeline a46ff352e2a03bd4ff45670efb27cb3c https://www.encodeproject.org/files/ENCFF429TOK/@@download/ENCFF429TOK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF437DMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF074DBO 94931 ENCODE Processing Pipeline e5cdbf4021b838c9e46ee1a44bb7ce41 https://www.encodeproject.org/files/ENCFF437DMQ/@@download/ENCFF437DMQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF163BLS bigBed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF605EKW 11104229 ENCODE Processing Pipeline 3cc45c1ebf28699a7e1b53c61f73059a https://www.encodeproject.org/files/ENCFF163BLS/@@download/ENCFF163BLS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF448ZAX bigBed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF048BXR 11043061 ENCODE Processing Pipeline 5b321962737d8da4795f2575640325d5 https://www.encodeproject.org/files/ENCFF448ZAX/@@download/ENCFF448ZAX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF638PJM bigBed narrowPeak optimal idr thresholded peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF495CSO 170534 ENCODE Processing Pipeline 154733906389e552d321e034bbf28918 https://www.encodeproject.org/files/ENCFF638PJM/@@download/ENCFF638PJM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF311TKI bam unfiltered alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 50 ENCFF440FTO, ENCFF807MUK 1561394747 ENCODE Processing Pipeline daee1a3a3d07f489a0a11a4b195492e1 https://www.encodeproject.org/files/ENCFF311TKI/@@download/ENCFF311TKI.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF330HFG bam unfiltered alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 50 ENCFF776IQU, ENCFF807MUK 1689732816 ENCODE Processing Pipeline 318470fd1c806ba1dd2446473fd520bd https://www.encodeproject.org/files/ENCFF330HFG/@@download/ENCFF330HFG.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF440FTO fastq reads ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 1 50 single-ended 1414179313 Richard Myers, HAIB 28dc15b0c63e3e2c051145e25f8d97ea SRA:SRR5338834 https://www.encodeproject.org/files/ENCFF440FTO/@@download/ENCFF440FTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF247MLF/ released antibody characterized with exemption biological replicates with identical biosample ENCFF776IQU fastq reads ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 1 50 single-ended 1549752931 Richard Myers, HAIB ab39cbec07b17dfe92119efc3cf5b0fc SRA:SRR5338833 https://www.encodeproject.org/files/ENCFF776IQU/@@download/ENCFF776IQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample ENCFF150BNL bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 50 ENCFF440FTO, ENCFF807MUK 1138084234 ENCODE Processing Pipeline 69d9c8d6ae407fee6baf33385a62f17c https://www.encodeproject.org/files/ENCFF150BNL/@@download/ENCFF150BNL.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF097YMB bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 50 ENCFF776IQU, ENCFF807MUK 1225359379 ENCODE Processing Pipeline 20beba0b3546a4929d77b0ade0e58f67 https://www.encodeproject.org/files/ENCFF097YMB/@@download/ENCFF097YMB.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF799SKH bigWig signal p-value ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF097YMB, ENCFF321UJV 578529578 ENCODE Processing Pipeline e4b93a8790ca16317a34696afdd26ec4 https://www.encodeproject.org/files/ENCFF799SKH/@@download/ENCFF799SKH.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF258UIX bigWig signal p-value ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF150BNL, ENCFF871NUZ 587320709 ENCODE Processing Pipeline f6e8bc0aceb8cbcb122d3985bd58eb52 https://www.encodeproject.org/files/ENCFF258UIX/@@download/ENCFF258UIX.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF883PMP bigWig fold change over control ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF097YMB, ENCFF321UJV 666210959 ENCODE Processing Pipeline 61eeea627e198a0d5ee10b20574be5ed https://www.encodeproject.org/files/ENCFF883PMP/@@download/ENCFF883PMP.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF946FAG bigWig signal p-value ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF097YMB, ENCFF150BNL, ENCFF321UJV, ENCFF871NUZ 1036128179 ENCODE Processing Pipeline 5617606c697b243d872ed8e04c8c0034 https://www.encodeproject.org/files/ENCFF946FAG/@@download/ENCFF946FAG.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF345JTW bigWig fold change over control ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF150BNL, ENCFF871NUZ 601756822 ENCODE Processing Pipeline b1c1d459add941f0ec0e3fc601e2f47c https://www.encodeproject.org/files/ENCFF345JTW/@@download/ENCFF345JTW.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF386HDH bigWig fold change over control ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF097YMB, ENCFF150BNL, ENCFF321UJV, ENCFF871NUZ 1296991118 ENCODE Processing Pipeline dc6496139edacad02c4577fc1a20e5ac https://www.encodeproject.org/files/ENCFF386HDH/@@download/ENCFF386HDH.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF582WLM bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF097YMB, ENCFF321UJV 6367390 ENCODE Processing Pipeline 5a169b97b1266e69d4c5b7b56e48567a https://www.encodeproject.org/files/ENCFF582WLM/@@download/ENCFF582WLM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF373SRH bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF150BNL, ENCFF871NUZ 5660379 ENCODE Processing Pipeline 569017cf25d35c0cfea55ceb5e9876cd https://www.encodeproject.org/files/ENCFF373SRH/@@download/ENCFF373SRH.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF080EAQ bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF097YMB, ENCFF150BNL, ENCFF321UJV, ENCFF871NUZ 7031515 ENCODE Processing Pipeline 0aa626f4f59982649d1dc21a6a41fecd https://www.encodeproject.org/files/ENCFF080EAQ/@@download/ENCFF080EAQ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF242BYO bigBed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF582WLM 13379987 ENCODE Processing Pipeline b667ba900b58df0db46f8600ea5623df https://www.encodeproject.org/files/ENCFF242BYO/@@download/ENCFF242BYO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF224ZDH bigBed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF373SRH 13103054 ENCODE Processing Pipeline 206dfbc14c537b4a763c4f83b508fe21 https://www.encodeproject.org/files/ENCFF224ZDH/@@download/ENCFF224ZDH.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF398GWP bigBed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF080EAQ 13186541 ENCODE Processing Pipeline b482a5f48faad38373faab62d97eeaca https://www.encodeproject.org/files/ENCFF398GWP/@@download/ENCFF398GWP.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF219BOK bam unfiltered alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 50 ENCFF440FTO, ENCFF643CGH 1569013240 ENCODE Processing Pipeline 5220725a9fe419d15616536ea783f6ea https://www.encodeproject.org/files/ENCFF219BOK/@@download/ENCFF219BOK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF834QOO bam unfiltered alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 50 ENCFF643CGH, ENCFF776IQU 1698916146 ENCODE Processing Pipeline 70e42756f4511a789c7b15021b1e90e0 https://www.encodeproject.org/files/ENCFF834QOO/@@download/ENCFF834QOO.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF080WHB bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 50 ENCFF440FTO, ENCFF643CGH 1138076271 ENCODE Processing Pipeline 233a20dcfce5dd414c18fe5046ed685f https://www.encodeproject.org/files/ENCFF080WHB/@@download/ENCFF080WHB.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF528ZOZ bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 50 ENCFF643CGH, ENCFF776IQU 1225439452 ENCODE Processing Pipeline cb6f3de7b312ae94f4d037b7035dc681 https://www.encodeproject.org/files/ENCFF528ZOZ/@@download/ENCFF528ZOZ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF674DZC bigWig signal p-value ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF528ZOZ, ENCFF610PNU 689063115 ENCODE Processing Pipeline eaa8534e643d0f45d644e4984cd10cfa https://www.encodeproject.org/files/ENCFF674DZC/@@download/ENCFF674DZC.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF252DME bigWig signal p-value ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF080WHB, ENCFF259AXY 617098996 ENCODE Processing Pipeline 4801f2df6a6216fab71c550a05944496 https://www.encodeproject.org/files/ENCFF252DME/@@download/ENCFF252DME.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF275YHW bigWig fold change over control ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF528ZOZ, ENCFF610PNU 665547212 ENCODE Processing Pipeline 997a14606ebcb75209a00e075a1dea09 https://www.encodeproject.org/files/ENCFF275YHW/@@download/ENCFF275YHW.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF898LEJ bigWig signal p-value ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF080WHB, ENCFF259AXY, ENCFF528ZOZ, ENCFF610PNU 1076004124 ENCODE Processing Pipeline cdc4009ba786e753037921b0673f6b52 https://www.encodeproject.org/files/ENCFF898LEJ/@@download/ENCFF898LEJ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF127YRB bigWig fold change over control ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF080WHB, ENCFF259AXY 622229262 ENCODE Processing Pipeline b0adb0bd702c929b208d9621703e2130 https://www.encodeproject.org/files/ENCFF127YRB/@@download/ENCFF127YRB.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF245JEE bigWig fold change over control ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF080WHB, ENCFF259AXY, ENCFF528ZOZ, ENCFF610PNU 1281104561 ENCODE Processing Pipeline 7673ed35764cfb24070c8123547a2c70 https://www.encodeproject.org/files/ENCFF245JEE/@@download/ENCFF245JEE.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF430QRQ bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF528ZOZ, ENCFF610PNU 6162854 ENCODE Processing Pipeline a738830d41fc84465c9fdd62c92821f9 https://www.encodeproject.org/files/ENCFF430QRQ/@@download/ENCFF430QRQ.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF326ZRY bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF080WHB, ENCFF259AXY 5512126 ENCODE Processing Pipeline 01dfd8915fa7b96dbecef3a5fd33b766 https://www.encodeproject.org/files/ENCFF326ZRY/@@download/ENCFF326ZRY.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF915VTY bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF080WHB, ENCFF259AXY, ENCFF528ZOZ, ENCFF610PNU 6941265 ENCODE Processing Pipeline 437712de8b0735804415bcf7caf3a744 https://www.encodeproject.org/files/ENCFF915VTY/@@download/ENCFF915VTY.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF497NYV bigBed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF430QRQ 13417395 ENCODE Processing Pipeline c302168daf351393d14cd1e21c8ebfc8 https://www.encodeproject.org/files/ENCFF497NYV/@@download/ENCFF497NYV.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF957KET bigBed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF326ZRY 13082238 ENCODE Processing Pipeline 607ecd18c5d172d822bc14283cac7f16 https://www.encodeproject.org/files/ENCFF957KET/@@download/ENCFF957KET.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF851IVF bigBed narrowPeak conservative idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF517PUF 721650 ENCODE Processing Pipeline acd21f9387aa12ed158f3c9f5347ef9a https://www.encodeproject.org/files/ENCFF851IVF/@@download/ENCFF851IVF.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF253CIY bigBed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF915VTY 13200153 ENCODE Processing Pipeline 085561ff18c393d5960c731ac9060fbc https://www.encodeproject.org/files/ENCFF253CIY/@@download/ENCFF253CIY.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF517PUF bed narrowPeak conservative idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF326ZRY, ENCFF419RSJ, ENCFF430QRQ, ENCFF915VTY 348148 ENCODE Processing Pipeline 592d37569cb49a0b756f5aa35aad511d https://www.encodeproject.org/files/ENCFF517PUF/@@download/ENCFF517PUF.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF707ORF bigBed narrowPeak optimal idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF727ZIT 816339 ENCODE Processing Pipeline e7f2993edd4a58ef1cf7e04e9411e316 https://www.encodeproject.org/files/ENCFF707ORF/@@download/ENCFF707ORF.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF727ZIT bed narrowPeak optimal idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF326ZRY, ENCFF419RSJ, ENCFF430QRQ, ENCFF915VTY 406098 ENCODE Processing Pipeline f41c3b769637018a9a8aff141dbc1b20 https://www.encodeproject.org/files/ENCFF727ZIT/@@download/ENCFF727ZIT.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF668LCR bigBed narrowPeak conservative idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF896PDY 516627 ENCODE Processing Pipeline 639aa9863beffc52ada7418c8a42aec9 https://www.encodeproject.org/files/ENCFF668LCR/@@download/ENCFF668LCR.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF896PDY bed narrowPeak conservative idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF001TDO, ENCFF080EAQ, ENCFF373SRH, ENCFF582WLM 292693 ENCODE Processing Pipeline e1f4dc8fb14de70a97ab688fd6e9cdb9 https://www.encodeproject.org/files/ENCFF896PDY/@@download/ENCFF896PDY.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF688LUP bed narrowPeak optimal idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF001TDO, ENCFF080EAQ, ENCFF373SRH, ENCFF582WLM 345115 ENCODE Processing Pipeline 6261d9022afb9f39ecff325f89aa7120 https://www.encodeproject.org/files/ENCFF688LUP/@@download/ENCFF688LUP.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF195IMH bigBed narrowPeak optimal idr thresholded peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1, 2 ENCFF688LUP 582402 ENCODE Processing Pipeline 71a3256b0b2a1375f7f6f72edf184fe6 https://www.encodeproject.org/files/ENCFF195IMH/@@download/ENCFF195IMH.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF296CSX fastq reads ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1340132818 Richard Myers, HAIB cee15f1565ffcf1d98c86600700b3b35 SRA:SRR6213103 https://www.encodeproject.org/files/ENCFF296CSX/@@download/ENCFF296CSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample ENCFF269CGY fastq reads ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1593141558 Richard Myers, HAIB dff495e3e08f692b300103c8f85b8524 SRA:SRR6213102 https://www.encodeproject.org/files/ENCFF269CGY/@@download/ENCFF269CGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF977SGP/ released antibody characterized with exemption biological replicates with identical biosample ENCFF471SKP bam unfiltered alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF296CSX, ENCFF643CGH 1522272174 ENCODE Processing Pipeline ce2c1e09e5d1e443b527f85da6cdd75b https://www.encodeproject.org/files/ENCFF471SKP/@@download/ENCFF471SKP.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF924NOS bam unfiltered alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF269CGY, ENCFF643CGH 1799863824 ENCODE Processing Pipeline 989178d4fbd39e0b6269a03383a1599d https://www.encodeproject.org/files/ENCFF924NOS/@@download/ENCFF924NOS.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF847XNM bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF269CGY, ENCFF643CGH 1359912781 ENCODE Processing Pipeline ce70f6149f7fd2631d627f6130c54596 https://www.encodeproject.org/files/ENCFF847XNM/@@download/ENCFF847XNM.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF855ZLU bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF296CSX, ENCFF643CGH 1167697886 ENCODE Processing Pipeline d7c26e09a044556145403cbbc9978499 https://www.encodeproject.org/files/ENCFF855ZLU/@@download/ENCFF855ZLU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF769YJR bigWig signal p-value ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF610PNU, ENCFF847XNM 1006439687 ENCODE Processing Pipeline e4dc19f2767208ca72a6e8cfed506dec https://www.encodeproject.org/files/ENCFF769YJR/@@download/ENCFF769YJR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF097YUB bigWig fold change over control ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF610PNU, ENCFF847XNM 890209037 ENCODE Processing Pipeline fe3000541460e6cf98e2c09c29ebfb67 https://www.encodeproject.org/files/ENCFF097YUB/@@download/ENCFF097YUB.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF477NZX bigWig signal p-value ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF855ZLU 618064200 ENCODE Processing Pipeline 677f1f2b1994374af5fe08f6234993e3 https://www.encodeproject.org/files/ENCFF477NZX/@@download/ENCFF477NZX.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF902TMK bigWig signal p-value ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200YPH, ENCFF610PNU, ENCFF847XNM, ENCFF855ZLU 1314243642 ENCODE Processing Pipeline c53bfc60891828b758fd8187d0843198 https://www.encodeproject.org/files/ENCFF902TMK/@@download/ENCFF902TMK.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF807UQJ bigWig fold change over control ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF855ZLU 623559704 ENCODE Processing Pipeline a9f96539c40c4fa3a4fa39431cbd765a https://www.encodeproject.org/files/ENCFF807UQJ/@@download/ENCFF807UQJ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF227URY bigWig fold change over control ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200YPH, ENCFF610PNU, ENCFF847XNM, ENCFF855ZLU 1297344615 ENCODE Processing Pipeline c5899c43028645eb57ccb81062cdcc10 https://www.encodeproject.org/files/ENCFF227URY/@@download/ENCFF227URY.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF545BKB bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF855ZLU 5310791 ENCODE Processing Pipeline d3acf2214cdb5a55cec9bb3645b5b35b https://www.encodeproject.org/files/ENCFF545BKB/@@download/ENCFF545BKB.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF210YMT bigBed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF332CDD 11561141 ENCODE Processing Pipeline 54d05816a5884a346fabcfe572f230cd https://www.encodeproject.org/files/ENCFF210YMT/@@download/ENCFF210YMT.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF168JLI bed narrowPeak optimal idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF282KOR, ENCFF332CDD, ENCFF419RSJ, ENCFF545BKB 428753 ENCODE Processing Pipeline 97ade72a55786d85f194cd408fc1ca22 https://www.encodeproject.org/files/ENCFF168JLI/@@download/ENCFF168JLI.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF879AIC bigBed narrowPeak optimal idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF168JLI 754225 ENCODE Processing Pipeline 707cba83d5c86f13007bbb9d4dd73f26 https://www.encodeproject.org/files/ENCFF879AIC/@@download/ENCFF879AIC.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF778DUG bigBed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF282KOR 11534778 ENCODE Processing Pipeline 832030bcb2105fe6ddb742b04d0e45e8 https://www.encodeproject.org/files/ENCFF778DUG/@@download/ENCFF778DUG.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF168JTA bed narrowPeak conservative idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF282KOR, ENCFF332CDD, ENCFF419RSJ, ENCFF545BKB 387691 ENCODE Processing Pipeline 49d98c495e526b930ddcb73c6d91ffd7 https://www.encodeproject.org/files/ENCFF168JTA/@@download/ENCFF168JTA.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF332CDD bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF610PNU, ENCFF847XNM 6079275 ENCODE Processing Pipeline 07cc669f1970864841f58ea4781d3d3c https://www.encodeproject.org/files/ENCFF332CDD/@@download/ENCFF332CDD.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF282KOR bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF200YPH, ENCFF610PNU, ENCFF847XNM, ENCFF855ZLU 6633902 ENCODE Processing Pipeline 196b522bbfdd9c1da78573a7654e0f2a https://www.encodeproject.org/files/ENCFF282KOR/@@download/ENCFF282KOR.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF228QLU bigBed narrowPeak conservative idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF168JTA 699389 ENCODE Processing Pipeline 1171180a67a4a3ba990c6b1fa092fae7 https://www.encodeproject.org/files/ENCFF228QLU/@@download/ENCFF228QLU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF942SEI bigBed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF545BKB 11332036 ENCODE Processing Pipeline 594b2b2eac60502a6866ee0585c0cd04 https://www.encodeproject.org/files/ENCFF942SEI/@@download/ENCFF942SEI.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF381WUT bam unfiltered alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF296CSX, ENCFF807MUK 1513585617 ENCODE Processing Pipeline a86c4221614a433cb4b97e80d8f2c063 https://www.encodeproject.org/files/ENCFF381WUT/@@download/ENCFF381WUT.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF111MMJ bam unfiltered alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF269CGY, ENCFF807MUK 1789446113 ENCODE Processing Pipeline 1137e6dcbe1cdabb301086691e0debd9 https://www.encodeproject.org/files/ENCFF111MMJ/@@download/ENCFF111MMJ.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF276ETD bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF269CGY, ENCFF807MUK 1359599673 ENCODE Processing Pipeline 9db0e68eebc19ede14ba39513da51f68 https://www.encodeproject.org/files/ENCFF276ETD/@@download/ENCFF276ETD.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF379HIU bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF296CSX, ENCFF807MUK 1167416914 ENCODE Processing Pipeline 8e340271b5885bcd69f61a9881e42474 https://www.encodeproject.org/files/ENCFF379HIU/@@download/ENCFF379HIU.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF990SZO bigBed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF474ZPF 11520101 ENCODE Processing Pipeline d03faf6e1aecd0285c418ad8030d2e57 https://www.encodeproject.org/files/ENCFF990SZO/@@download/ENCFF990SZO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF474ZPF bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV, ENCFF379HIU 6628021 ENCODE Processing Pipeline f44c6d1cfd3cde66666b84fcc8e20549 https://www.encodeproject.org/files/ENCFF474ZPF/@@download/ENCFF474ZPF.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF102KSZ bigWig signal p-value ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV 1005843858 ENCODE Processing Pipeline 19ac1884aeb478512bba237f442a189d https://www.encodeproject.org/files/ENCFF102KSZ/@@download/ENCFF102KSZ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF320OWB bed narrowPeak conservative idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF047WBC, ENCFF125PLO, ENCFF474ZPF 384885 ENCODE Processing Pipeline 63f7a2c322af2ee2a217c3d47a54b1f4 https://www.encodeproject.org/files/ENCFF320OWB/@@download/ENCFF320OWB.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF111TCG bigBed narrowPeak optimal idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF786DKS 737769 ENCODE Processing Pipeline 47b0e18a2ca0f307e5082cc4710cf393 https://www.encodeproject.org/files/ENCFF111TCG/@@download/ENCFF111TCG.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF714NQE bigWig signal p-value ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF379HIU 597934303 ENCODE Processing Pipeline d461193d480fdc513852bad066ccf52b https://www.encodeproject.org/files/ENCFF714NQE/@@download/ENCFF714NQE.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF548DBT bigWig signal p-value ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV, ENCFF379HIU 1173898446 ENCODE Processing Pipeline 056979cbdff35c2509361d37745f659c https://www.encodeproject.org/files/ENCFF548DBT/@@download/ENCFF548DBT.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF783CFQ bigWig fold change over control ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV 890539742 ENCODE Processing Pipeline 445e328887b225ad25931ffdaf7a70a2 https://www.encodeproject.org/files/ENCFF783CFQ/@@download/ENCFF783CFQ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF722DMF bigWig fold change over control ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF379HIU 627532358 ENCODE Processing Pipeline 77dd3e28062f5b5e3b5e26ae287bc35f https://www.encodeproject.org/files/ENCFF722DMF/@@download/ENCFF722DMF.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF294WXK bigWig fold change over control ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV, ENCFF379HIU 1306427596 ENCODE Processing Pipeline adaa37c9c9482cef8462b7348ae3acec https://www.encodeproject.org/files/ENCFF294WXK/@@download/ENCFF294WXK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF125PLO bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV 6079049 ENCODE Processing Pipeline 0c1c0a603aa87fcd889217b1fc1ee62b https://www.encodeproject.org/files/ENCFF125PLO/@@download/ENCFF125PLO.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF047WBC bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF379HIU 5314400 ENCODE Processing Pipeline 37fd80ee2f41d36cd1939bf965d71815 https://www.encodeproject.org/files/ENCFF047WBC/@@download/ENCFF047WBC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF068IOE bigBed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF125PLO 11555384 ENCODE Processing Pipeline 16bca410a561881ae2c1e068ceff8678 https://www.encodeproject.org/files/ENCFF068IOE/@@download/ENCFF068IOE.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF152MFV bigBed narrowPeak conservative idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF320OWB 693875 ENCODE Processing Pipeline 1d551a9bff1d1ce891f02c3b1089ec26 https://www.encodeproject.org/files/ENCFF152MFV/@@download/ENCFF152MFV.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF297PSO bigBed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF047WBC 11337415 ENCODE Processing Pipeline 8b8d528e09f8f725e600388a5ffc4af9 https://www.encodeproject.org/files/ENCFF297PSO/@@download/ENCFF297PSO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF786DKS bed narrowPeak optimal idr thresholded peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF047WBC, ENCFF125PLO, ENCFF474ZPF 417839 ENCODE Processing Pipeline cea1a5e5ed8c5d53eed103f964f51b28 https://www.encodeproject.org/files/ENCFF786DKS/@@download/ENCFF786DKS.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF205RPZ fastq reads ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF184WLG 3213574263 Michael Snyder, Stanford 7b81b17992eb221c5d5f2a5f64b83cac https://www.encodeproject.org/files/ENCFF205RPZ/@@download/ENCFF205RPZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF528TFO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF184WLG fastq reads ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF205RPZ 2686252825 Michael Snyder, Stanford 191c9fb666aa402a5184ff1fb5c94973 https://www.encodeproject.org/files/ENCFF184WLG/@@download/ENCFF184WLG.fastq.gz Illumina HiSeq 4000 /files/ENCFF315PYU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF894PNA bam unfiltered alignments ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF184WLG, ENCFF205RPZ, ENCFF643CGH 4896089336 ENCODE Processing Pipeline 1fc1426ae391a4d13edb5eb0c96e5da6 https://www.encodeproject.org/files/ENCFF894PNA/@@download/ENCFF894PNA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF775TBT bam alignments ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF184WLG, ENCFF205RPZ, ENCFF643CGH 2662532750 ENCODE Processing Pipeline df60cfa11a4a3cfd7cff9fd140f45dda https://www.encodeproject.org/files/ENCFF775TBT/@@download/ENCFF775TBT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF991PAM bam unfiltered alignments ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF184WLG, ENCFF205RPZ, ENCFF807MUK 4897131419 ENCODE Processing Pipeline c8633ecb357b49ffc2545c68a502d994 https://www.encodeproject.org/files/ENCFF991PAM/@@download/ENCFF991PAM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF738KRH bam alignments ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF184WLG, ENCFF205RPZ, ENCFF807MUK 2660312309 ENCODE Processing Pipeline 9cdfef7077aa49bc0ada880234603ff8 https://www.encodeproject.org/files/ENCFF738KRH/@@download/ENCFF738KRH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF277RFV bigWig signal p-value ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF320PZV, ENCFF738KRH 882326428 ENCODE Processing Pipeline cc6f2b021f6d2caf79519891e002059a https://www.encodeproject.org/files/ENCFF277RFV/@@download/ENCFF277RFV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF746ZUT bed narrowPeak peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF320PZV, ENCFF738KRH 6470437 ENCODE Processing Pipeline d82e0e54ca11388d7a1a4ddae8143302 https://www.encodeproject.org/files/ENCFF746ZUT/@@download/ENCFF746ZUT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF764ZIO bigBed narrowPeak peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF746ZUT 13791433 ENCODE Processing Pipeline 206d08a5bb699c8cf312589945182750 https://www.encodeproject.org/files/ENCFF764ZIO/@@download/ENCFF764ZIO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF366KFC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF240UFV 1258792 ENCODE Processing Pipeline dab071e8e82ab759e2cb5b8985d91ede https://www.encodeproject.org/files/ENCFF366KFC/@@download/ENCFF366KFC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF240UFV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF746ZUT 760219 ENCODE Processing Pipeline 52ae5edd1a62d3c0f86fc6249cb451d4 https://www.encodeproject.org/files/ENCFF240UFV/@@download/ENCFF240UFV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF482ZNO bigWig fold change over control ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF320PZV, ENCFF738KRH 874031094 ENCODE Processing Pipeline f7691a79b0c712d1e44b31bb0e84cda4 https://www.encodeproject.org/files/ENCFF482ZNO/@@download/ENCFF482ZNO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF618LAX bigBed narrowPeak peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF852FMV 13807752 ENCODE Processing Pipeline 48c798735d3c9475ae5374f4e9d3d0a2 https://www.encodeproject.org/files/ENCFF618LAX/@@download/ENCFF618LAX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF556RUC bigWig fold change over control ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF775TBT, ENCFF925AMH 873561388 ENCODE Processing Pipeline 447eb4c7498de6eeddeb24ec084a41e4 https://www.encodeproject.org/files/ENCFF556RUC/@@download/ENCFF556RUC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF852FMV bed narrowPeak peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF775TBT, ENCFF925AMH 6475643 ENCODE Processing Pipeline 30443fe41e62a55dea93ea1c3e153d6b https://www.encodeproject.org/files/ENCFF852FMV/@@download/ENCFF852FMV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF138GGL bigWig signal p-value ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF775TBT, ENCFF925AMH 808419406 ENCODE Processing Pipeline cb7e89415e65886fdeaf7c0114f6e103 https://www.encodeproject.org/files/ENCFF138GGL/@@download/ENCFF138GGL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF552XDP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF852FMV 766732 ENCODE Processing Pipeline c4141c736a282290131c8ddd00f10a67 https://www.encodeproject.org/files/ENCFF552XDP/@@download/ENCFF552XDP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF685YOM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF552XDP 1267657 ENCODE Processing Pipeline 192c379351e904f7a386d32fcec8b86e https://www.encodeproject.org/files/ENCFF685YOM/@@download/ENCFF685YOM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF902NOA bam unfiltered alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 100 ENCFF022SAF, ENCFF277ZND, ENCFF446YHR, ENCFF524UOO, ENCFF807MUK 5168459783 ENCODE Processing Pipeline c137a886e14c0e496ac7031247c895fa https://www.encodeproject.org/files/ENCFF902NOA/@@download/ENCFF902NOA.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF995XPS bam unfiltered alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 100 ENCFF613UAT, ENCFF618IBA, ENCFF807MUK 4687829583 ENCODE Processing Pipeline f741cb2bd6ad87a8e2a3543e8bce8315 https://www.encodeproject.org/files/ENCFF995XPS/@@download/ENCFF995XPS.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF277ZND fastq reads ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF524UOO 1549079725 Michael Snyder, Stanford 473f3f62e168e3e027b0ab1d7a8bb001 SRA:SRR5111541 https://www.encodeproject.org/files/ENCFF277ZND/@@download/ENCFF277ZND.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF613UAT fastq reads ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF618IBA 2318704612 Michael Snyder, Stanford defc7a4f9384dfd28bc2477e423fb8ff SRA:SRR5111539 https://www.encodeproject.org/files/ENCFF613UAT/@@download/ENCFF613UAT.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF446YHR fastq reads ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF022SAF 1032838611 Michael Snyder, Stanford 7eae997c3b0f88a02f294d3dee0cca3d SRA:SRR5111540 https://www.encodeproject.org/files/ENCFF446YHR/@@download/ENCFF446YHR.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF022SAF fastq reads ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF446YHR 987927105 Michael Snyder, Stanford 8df8212df71ec6f5eba971b6b618ff09 SRA:SRR5111540 https://www.encodeproject.org/files/ENCFF022SAF/@@download/ENCFF022SAF.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF618IBA fastq reads ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF613UAT 2431254592 Michael Snyder, Stanford 43a1c3a054513cfa20065c1244d36e7e SRA:SRR5111539 https://www.encodeproject.org/files/ENCFF618IBA/@@download/ENCFF618IBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF524UOO fastq reads ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF277ZND 1547613635 Michael Snyder, Stanford e7933e68b456fc41264816ec54ea369b SRA:SRR5111541 https://www.encodeproject.org/files/ENCFF524UOO/@@download/ENCFF524UOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF026HSI/, /files/ENCFF096LLU/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF658ADO bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF022SAF, ENCFF277ZND, ENCFF446YHR, ENCFF524UOO, ENCFF807MUK 3439976857 ENCODE Processing Pipeline 5556514db160db4778806961082f94be https://www.encodeproject.org/files/ENCFF658ADO/@@download/ENCFF658ADO.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF800BIH bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF613UAT, ENCFF618IBA, ENCFF807MUK 2764817616 ENCODE Processing Pipeline 3935af74c9962cfe8db1fbee67ed9981 https://www.encodeproject.org/files/ENCFF800BIH/@@download/ENCFF800BIH.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF302ZWQ bigWig signal p-value ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF469YUW, ENCFF800BIH 633912790 ENCODE Processing Pipeline e133d78a9d726a67d58629d1e2115b8c https://www.encodeproject.org/files/ENCFF302ZWQ/@@download/ENCFF302ZWQ.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF003VRX bigWig fold change over control ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF469YUW, ENCFF800BIH 662947884 ENCODE Processing Pipeline ede0e05cf4740d864658eb1ba5a58751 https://www.encodeproject.org/files/ENCFF003VRX/@@download/ENCFF003VRX.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF062XFS bigWig fold change over control ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF469YUW, ENCFF658ADO, ENCFF800BIH 1099189163 ENCODE Processing Pipeline e2dffeca567c5d7e8f798184dde6ea6d https://www.encodeproject.org/files/ENCFF062XFS/@@download/ENCFF062XFS.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF005WLV bigWig signal p-value ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF469YUW, ENCFF658ADO, ENCFF800BIH 720497318 ENCODE Processing Pipeline 4f60407e99a0740f21a394bd93211f5d https://www.encodeproject.org/files/ENCFF005WLV/@@download/ENCFF005WLV.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF559WEI bigWig fold change over control ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF469YUW, ENCFF658ADO 753966248 ENCODE Processing Pipeline b046fd7fc360c7285d009f8c69ee96a3 https://www.encodeproject.org/files/ENCFF559WEI/@@download/ENCFF559WEI.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF568ATE bigWig signal p-value ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF469YUW, ENCFF658ADO 753102829 ENCODE Processing Pipeline 137d046ad5fc0704fbdd2fb9962e440b https://www.encodeproject.org/files/ENCFF568ATE/@@download/ENCFF568ATE.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF642AZQ bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF469YUW, ENCFF800BIH 6908161 ENCODE Processing Pipeline df619303cb7cd7dd5aa205ccf8675504 https://www.encodeproject.org/files/ENCFF642AZQ/@@download/ENCFF642AZQ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF229OHX bigBed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF923FBF 12237068 ENCODE Processing Pipeline a88fe483d6d9cb52fb54ce2c947b3794 https://www.encodeproject.org/files/ENCFF229OHX/@@download/ENCFF229OHX.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF964AOB bigBed narrowPeak optimal idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF801YZV 1091420 ENCODE Processing Pipeline b5a2fa7f39c96aabcd256bdcc41bf875 https://www.encodeproject.org/files/ENCFF964AOB/@@download/ENCFF964AOB.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF910COF bed narrowPeak conservative idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF138QHW, ENCFF642AZQ, ENCFF923FBF 427638 ENCODE Processing Pipeline 431e0ad1d8469bf48bd6bf98ff3065d3 https://www.encodeproject.org/files/ENCFF910COF/@@download/ENCFF910COF.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF575QDQ bigBed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF642AZQ 12488731 ENCODE Processing Pipeline 8682d10ea4f6f46133a4568218e47817 https://www.encodeproject.org/files/ENCFF575QDQ/@@download/ENCFF575QDQ.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF138QHW bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF469YUW, ENCFF658ADO 6967604 ENCODE Processing Pipeline 3332e75add43e3f65ea6492367248cb1 https://www.encodeproject.org/files/ENCFF138QHW/@@download/ENCFF138QHW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF923FBF bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF469YUW, ENCFF658ADO, ENCFF800BIH 7258022 ENCODE Processing Pipeline 7635e09ee8a1201a82a81ebfe3ccb1e5 https://www.encodeproject.org/files/ENCFF923FBF/@@download/ENCFF923FBF.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF411VMP bigBed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF138QHW 12397066 ENCODE Processing Pipeline 739d85383625fd8354768384924ca2fa https://www.encodeproject.org/files/ENCFF411VMP/@@download/ENCFF411VMP.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF176ZVU bigBed narrowPeak conservative idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF910COF 1084455 ENCODE Processing Pipeline 66f88706ca7e766091c81228793d4c79 https://www.encodeproject.org/files/ENCFF176ZVU/@@download/ENCFF176ZVU.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF801YZV bed narrowPeak optimal idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF138QHW, ENCFF642AZQ, ENCFF923FBF 430559 ENCODE Processing Pipeline 21629fbc4edc4f436e21cde911048f95 https://www.encodeproject.org/files/ENCFF801YZV/@@download/ENCFF801YZV.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF398YEY bam unfiltered alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 100 ENCFF022SAF, ENCFF277ZND, ENCFF446YHR, ENCFF524UOO, ENCFF643CGH 5169857312 ENCODE Processing Pipeline 82cd8adb137330fa2dc1db3b8fe1632b https://www.encodeproject.org/files/ENCFF398YEY/@@download/ENCFF398YEY.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF241ZAF bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 100 ENCFF613UAT, ENCFF618IBA, ENCFF643CGH 2765822513 ENCODE Processing Pipeline 870f03c0fc788af1256644b612fd4647 https://www.encodeproject.org/files/ENCFF241ZAF/@@download/ENCFF241ZAF.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF825VBC bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 100 ENCFF022SAF, ENCFF277ZND, ENCFF446YHR, ENCFF524UOO, ENCFF643CGH 3442023711 ENCODE Processing Pipeline c1627a8054a7ad4e1e0985535816fb13 https://www.encodeproject.org/files/ENCFF825VBC/@@download/ENCFF825VBC.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF665FNS bam unfiltered alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 100 ENCFF613UAT, ENCFF618IBA, ENCFF643CGH 4687145462 ENCODE Processing Pipeline c9f382d2d7e92e0b22df70233fde536e https://www.encodeproject.org/files/ENCFF665FNS/@@download/ENCFF665FNS.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF400QUR bigWig signal p-value ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF241ZAF, ENCFF448DJP 535774413 ENCODE Processing Pipeline 2d509c54df2665347ccd8907f8460b23 https://www.encodeproject.org/files/ENCFF400QUR/@@download/ENCFF400QUR.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF511QRN bigWig signal p-value ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF448DJP, ENCFF825VBC 725558650 ENCODE Processing Pipeline 3f0d1f723f8d153be742ba34c08928ef https://www.encodeproject.org/files/ENCFF511QRN/@@download/ENCFF511QRN.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF019RIT bigWig signal p-value ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF241ZAF, ENCFF448DJP, ENCFF825VBC 727328613 ENCODE Processing Pipeline d7f140b27983e82eb0e357eba6115ded https://www.encodeproject.org/files/ENCFF019RIT/@@download/ENCFF019RIT.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF310SPV bigWig fold change over control ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF241ZAF, ENCFF448DJP 679245816 ENCODE Processing Pipeline 288196f59f6d543a6f1258541485ccf6 https://www.encodeproject.org/files/ENCFF310SPV/@@download/ENCFF310SPV.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF127UGQ bigWig fold change over control ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF448DJP, ENCFF825VBC 752870095 ENCODE Processing Pipeline 5cc42132a7bfa05fdcc5931c6a56268e https://www.encodeproject.org/files/ENCFF127UGQ/@@download/ENCFF127UGQ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF717XWU bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF448DJP, ENCFF825VBC 6873192 ENCODE Processing Pipeline 1f57ba82231b59474d4751b8a434c3e6 https://www.encodeproject.org/files/ENCFF717XWU/@@download/ENCFF717XWU.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF276SWS bigWig fold change over control ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF241ZAF, ENCFF448DJP, ENCFF825VBC 1109629632 ENCODE Processing Pipeline 74104b4ea83148d7f924bfed17cb2d66 https://www.encodeproject.org/files/ENCFF276SWS/@@download/ENCFF276SWS.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF357PZU bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF241ZAF, ENCFF448DJP 6781607 ENCODE Processing Pipeline 9e116b17ae83577de98675a3ee3e8457 https://www.encodeproject.org/files/ENCFF357PZU/@@download/ENCFF357PZU.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF026FEJ bed narrowPeak conservative idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF357PZU, ENCFF419RSJ, ENCFF420GQF, ENCFF717XWU 429898 ENCODE Processing Pipeline c2331f927f2bc802a49835662479d625 https://www.encodeproject.org/files/ENCFF026FEJ/@@download/ENCFF026FEJ.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF420GQF bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF241ZAF, ENCFF448DJP, ENCFF825VBC 7240416 ENCODE Processing Pipeline 2bf2d97a56fc21758d740dae80bbcf2d https://www.encodeproject.org/files/ENCFF420GQF/@@download/ENCFF420GQF.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF489BXE bigBed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF717XWU 12422624 ENCODE Processing Pipeline 5bc6f55f85698f37d062a69ce6615e65 https://www.encodeproject.org/files/ENCFF489BXE/@@download/ENCFF489BXE.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF726AIY bigBed narrowPeak conservative idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF026FEJ 1090904 ENCODE Processing Pipeline 7a88dc773a7e5243c703f72e039cc396 https://www.encodeproject.org/files/ENCFF726AIY/@@download/ENCFF726AIY.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF922MYE bed narrowPeak optimal idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF357PZU, ENCFF419RSJ, ENCFF420GQF, ENCFF717XWU 431668 ENCODE Processing Pipeline 2e77a9768dd3084d806135f4607f3d3d https://www.encodeproject.org/files/ENCFF922MYE/@@download/ENCFF922MYE.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF959CCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF922MYE 1096503 ENCODE Processing Pipeline 4c5b69e62f6014e1589b7be273994ebe https://www.encodeproject.org/files/ENCFF959CCZ/@@download/ENCFF959CCZ.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF921ZEU bigBed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF357PZU 12497544 ENCODE Processing Pipeline fa9e678ce2a68b34f487845c6dd2a5fc https://www.encodeproject.org/files/ENCFF921ZEU/@@download/ENCFF921ZEU.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF002LRU bigBed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF420GQF 12245697 ENCODE Processing Pipeline 846a8202c8af202d79c8b028ad613cec https://www.encodeproject.org/files/ENCFF002LRU/@@download/ENCFF002LRU.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF639NST fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF377QZD 3177224776 Michael Snyder, Stanford 37fd949c94b2d5a740550238a4cf5daa SRA:SRR6214165 https://www.encodeproject.org/files/ENCFF639NST/@@download/ENCFF639NST.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF571OVI fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF370YRD 2535833905 Michael Snyder, Stanford 7a806918818fb8d2c24fc1f8b084222f SRA:SRR6214166 https://www.encodeproject.org/files/ENCFF571OVI/@@download/ENCFF571OVI.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF370YRD fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF571OVI 3050836630 Michael Snyder, Stanford da5be69acf0214792208a805d81f7c70 SRA:SRR6214166 https://www.encodeproject.org/files/ENCFF370YRD/@@download/ENCFF370YRD.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF377QZD fastq reads ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF639NST 2663775495 Michael Snyder, Stanford 8af46243d1b9223a7bc8ed70e2e717a6 SRA:SRR6214165 https://www.encodeproject.org/files/ENCFF377QZD/@@download/ENCFF377QZD.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF938PVW bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF807MUK 5556176978 ENCODE Processing Pipeline c4325e9cdc046639ccca72a92c3ecf2f https://www.encodeproject.org/files/ENCFF938PVW/@@download/ENCFF938PVW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF837JGZ bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF807MUK 4333350845 ENCODE Processing Pipeline ad537d4b37d903472e2ccfa361b53dea https://www.encodeproject.org/files/ENCFF837JGZ/@@download/ENCFF837JGZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF673BXM bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF643CGH 4338868543 ENCODE Processing Pipeline 91ad0057d578ec9100683a26d2e5edf0 https://www.encodeproject.org/files/ENCFF673BXM/@@download/ENCFF673BXM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF283EIU bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF643CGH 5566169863 ENCODE Processing Pipeline db118132b098113cfe8cb3f18d538be7 https://www.encodeproject.org/files/ENCFF283EIU/@@download/ENCFF283EIU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF771QRJ bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF807MUK 5766861632 ENCODE Processing Pipeline 1fbb65182d0cb50ee219a5ed5692e39a https://www.encodeproject.org/files/ENCFF771QRJ/@@download/ENCFF771QRJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF285GPK bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF807MUK 4628792353 ENCODE Processing Pipeline 7866e6fd77504b5d638a1f87558e607b https://www.encodeproject.org/files/ENCFF285GPK/@@download/ENCFF285GPK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF906JCA bam unfiltered alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF643CGH 5778952802 ENCODE Processing Pipeline aa3d114ccb8fefc70240a9cf7ecb70e5 https://www.encodeproject.org/files/ENCFF906JCA/@@download/ENCFF906JCA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF622GDZ bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF643CGH 4634547922 ENCODE Processing Pipeline 94f227e953313b234b48c817bd4f3a3e https://www.encodeproject.org/files/ENCFF622GDZ/@@download/ENCFF622GDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF154UVB bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF622GDZ, ENCFF666ATR 1096189685 ENCODE Processing Pipeline 905e1317f6ad737666ab4fd351d90c81 https://www.encodeproject.org/files/ENCFF154UVB/@@download/ENCFF154UVB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF471ZBT bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF888XOT 11306339 ENCODE Processing Pipeline f4087bcbb9edffb4f543d02987489404 https://www.encodeproject.org/files/ENCFF471ZBT/@@download/ENCFF471ZBT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF129EUE bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF673BXM 1218740877 ENCODE Processing Pipeline 7504522f10556d2915c124b394797f23 https://www.encodeproject.org/files/ENCFF129EUE/@@download/ENCFF129EUE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF795CVL bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF673BXM 1316644808 ENCODE Processing Pipeline bcd7839f8e73abbf9e7a9c1e81dc2650 https://www.encodeproject.org/files/ENCFF795CVL/@@download/ENCFF795CVL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF407DVX bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF622GDZ, ENCFF666ATR 1406455826 ENCODE Processing Pipeline 0d20e17653002e6c7c275161d4f9ccac https://www.encodeproject.org/files/ENCFF407DVX/@@download/ENCFF407DVX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF023CKP bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF622GDZ, ENCFF666ATR, ENCFF673BXM 2203821467 ENCODE Processing Pipeline bcc309a2978afdd0ca3ea2033e76c0b9 https://www.encodeproject.org/files/ENCFF023CKP/@@download/ENCFF023CKP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF783BUR bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF322NTO, ENCFF673BXM 5881301 ENCODE Processing Pipeline b9f167c0b9ce714e6dd1e3bb678257d5 https://www.encodeproject.org/files/ENCFF783BUR/@@download/ENCFF783BUR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF817XFQ bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF834GJB 11270294 ENCODE Processing Pipeline 45e593d75b97a1f33c8081c7885edb28 https://www.encodeproject.org/files/ENCFF817XFQ/@@download/ENCFF817XFQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF467MFZ bed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF783BUR, ENCFF834GJB, ENCFF888XOT 72692 ENCODE Processing Pipeline a409e63d13538a72c550ab8416a294d3 https://www.encodeproject.org/files/ENCFF467MFZ/@@download/ENCFF467MFZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF834GJB bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF622GDZ, ENCFF666ATR, ENCFF673BXM 7111345 ENCODE Processing Pipeline 976a2465f395a5182204c72168c1152b https://www.encodeproject.org/files/ENCFF834GJB/@@download/ENCFF834GJB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF860IXB bed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF783BUR, ENCFF834GJB, ENCFF888XOT 111070 ENCODE Processing Pipeline 18003142c000a9ddbc9550a252231c5d https://www.encodeproject.org/files/ENCFF860IXB/@@download/ENCFF860IXB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF632AUI bigBed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF860IXB 307273 ENCODE Processing Pipeline 812abcb4b3a175bca667a11de939c2d9 https://www.encodeproject.org/files/ENCFF632AUI/@@download/ENCFF632AUI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF153FDP bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF322NTO, ENCFF622GDZ, ENCFF666ATR, ENCFF673BXM 2362451636 ENCODE Processing Pipeline cc209db7fa03cfb4a68cac82bcd0d370 https://www.encodeproject.org/files/ENCFF153FDP/@@download/ENCFF153FDP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF888XOT bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF622GDZ, ENCFF666ATR 6126274 ENCODE Processing Pipeline 98e2c82fcc8446ecf9f30d4a366aa514 https://www.encodeproject.org/files/ENCFF888XOT/@@download/ENCFF888XOT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF115FDF bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF783BUR 11570613 ENCODE Processing Pipeline 06ca92a218932b8ce769d06d1bd3825d https://www.encodeproject.org/files/ENCFF115FDF/@@download/ENCFF115FDF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF512ZCS bigBed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF467MFZ 230224 ENCODE Processing Pipeline a75ec89840172033b3a8511f0bd59441 https://www.encodeproject.org/files/ENCFF512ZCS/@@download/ENCFF512ZCS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF878QAV bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 1198725055 ENCODE Processing Pipeline 5cd3142b4a6ed20aaa8821bf16eac8bb https://www.encodeproject.org/files/ENCFF878QAV/@@download/ENCFF878QAV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF238LQY bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 1328278139 ENCODE Processing Pipeline 8978fe04c639d5673e248c0d0f9d5f16 https://www.encodeproject.org/files/ENCFF238LQY/@@download/ENCFF238LQY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF502QYQ bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF285GPK, ENCFF592WAL, ENCFF837JGZ, ENCFF901CND 2359934095 ENCODE Processing Pipeline a78d1c636ff5f8050d9b746353b32b6b https://www.encodeproject.org/files/ENCFF502QYQ/@@download/ENCFF502QYQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF227WND bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 1364176549 ENCODE Processing Pipeline 0597b709114718e896a00c89d6d28335 https://www.encodeproject.org/files/ENCFF227WND/@@download/ENCFF227WND.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF911GOM bigWig signal p-value ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF285GPK, ENCFF592WAL, ENCFF837JGZ, ENCFF901CND 1886250438 ENCODE Processing Pipeline f5cf0c869d638ae928b7e0ecbcef7559 https://www.encodeproject.org/files/ENCFF911GOM/@@download/ENCFF911GOM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF788IBU bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF635ZSK 11241953 ENCODE Processing Pipeline 8fbb9c364cb30c2a01b5ba1f058ffdbd https://www.encodeproject.org/files/ENCFF788IBU/@@download/ENCFF788IBU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF610VCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF166FRO 305111 ENCODE Processing Pipeline c7d84d6753dcb36693066db5c5a9743f https://www.encodeproject.org/files/ENCFF610VCZ/@@download/ENCFF610VCZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF763SSU bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 6126835 ENCODE Processing Pipeline dfc477ce4fcf5905d865702a5f6909f6 https://www.encodeproject.org/files/ENCFF763SSU/@@download/ENCFF763SSU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF635ZSK bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF285GPK, ENCFF592WAL, ENCFF837JGZ, ENCFF901CND 7102530 ENCODE Processing Pipeline a49bf3fe7dc78f561d83f7129d7982f8 https://www.encodeproject.org/files/ENCFF635ZSK/@@download/ENCFF635ZSK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF166FRO bed narrowPeak optimal idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF044ASF, ENCFF635ZSK, ENCFF763SSU 111900 ENCODE Processing Pipeline ecdcd45712ada557b780b8561c0c71c2 https://www.encodeproject.org/files/ENCFF166FRO/@@download/ENCFF166FRO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF498FVD bigWig fold change over control ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 1306600197 ENCODE Processing Pipeline 043c0a4cfe676f4ab0bee60d61d28a95 https://www.encodeproject.org/files/ENCFF498FVD/@@download/ENCFF498FVD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF593EHO bed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF044ASF, ENCFF635ZSK, ENCFF763SSU 71564 ENCODE Processing Pipeline b44f16e0ecc26b10f1184749715aed2d https://www.encodeproject.org/files/ENCFF593EHO/@@download/ENCFF593EHO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF625VMI bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF763SSU 11286378 ENCODE Processing Pipeline b4e7fb2e1091126d27963f645bfbfd22 https://www.encodeproject.org/files/ENCFF625VMI/@@download/ENCFF625VMI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF042RTT bigBed narrowPeak conservative idr thresholded peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF593EHO 226554 ENCODE Processing Pipeline 7716ddfa16be2eb5847fbd3e5d880781 https://www.encodeproject.org/files/ENCFF042RTT/@@download/ENCFF042RTT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF044ASF bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 5883861 ENCODE Processing Pipeline 72c233681b4110fc7b0b05c604de3f7f https://www.encodeproject.org/files/ENCFF044ASF/@@download/ENCFF044ASF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF220ZRE bigBed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF044ASF 11555579 ENCODE Processing Pipeline 431d416c7dae1a5f8697057b510f08a9 https://www.encodeproject.org/files/ENCFF220ZRE/@@download/ENCFF220ZRE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF063DDH fastq reads ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF955ITN 2315621272 Michael Snyder, Stanford 5581510f632790451e447eb0f3f3da42 SRA:SRR6213627 https://www.encodeproject.org/files/ENCFF063DDH/@@download/ENCFF063DDH.fastq.gz Illumina HiSeq 4000 /files/ENCFF610QSY/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF955ITN fastq reads ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF063DDH 2623524664 Michael Snyder, Stanford d497c614898ebf0e2ce7898be45471d5 SRA:SRR6213627 https://www.encodeproject.org/files/ENCFF955ITN/@@download/ENCFF955ITN.fastq.gz Illumina HiSeq 4000 /files/ENCFF183XHS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF838IBQ bam unfiltered alignments ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF063DDH, ENCFF643CGH, ENCFF955ITN 4847688036 ENCODE Processing Pipeline 8ea9f6dcc3b833e78e8f017de26018f2 https://www.encodeproject.org/files/ENCFF838IBQ/@@download/ENCFF838IBQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF816UDH bam alignments ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF063DDH, ENCFF807MUK, ENCFF955ITN 3694036826 ENCODE Processing Pipeline d52129f8f49d3f3bdc4c77208a923e50 https://www.encodeproject.org/files/ENCFF816UDH/@@download/ENCFF816UDH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF866WNA bam unfiltered alignments ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF063DDH, ENCFF807MUK, ENCFF955ITN 4841948411 ENCODE Processing Pipeline e9b4a31112c986dd71cbd0da326f2816 https://www.encodeproject.org/files/ENCFF866WNA/@@download/ENCFF866WNA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF708PYT bam alignments ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF063DDH, ENCFF643CGH, ENCFF955ITN 3698918496 ENCODE Processing Pipeline e24c0730f641452f97f5f8e93962587d https://www.encodeproject.org/files/ENCFF708PYT/@@download/ENCFF708PYT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF791NBS bigWig fold change over control ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF080TZU, ENCFF816UDH 1209492195 ENCODE Processing Pipeline 41d94b9bbdfbad758f1eef7307588f39 https://www.encodeproject.org/files/ENCFF791NBS/@@download/ENCFF791NBS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF568XAR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF690LWY 816077 ENCODE Processing Pipeline 75d92b15f37100c4910aaaeb95fc4251 https://www.encodeproject.org/files/ENCFF568XAR/@@download/ENCFF568XAR.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF638CTK bigWig signal p-value ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF080TZU, ENCFF816UDH 1246694822 ENCODE Processing Pipeline f5830de22163a166c046cd6ef1a30f80 https://www.encodeproject.org/files/ENCFF638CTK/@@download/ENCFF638CTK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF690LWY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF765IPM 317189 ENCODE Processing Pipeline fbd2aab3b42549781be5530a0c52fa6a https://www.encodeproject.org/files/ENCFF690LWY/@@download/ENCFF690LWY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF595DXD bigBed narrowPeak peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF765IPM 13325174 ENCODE Processing Pipeline d1334c6c0c20749bc2c242ba8396a10a https://www.encodeproject.org/files/ENCFF595DXD/@@download/ENCFF595DXD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF765IPM bed narrowPeak peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF080TZU, ENCFF816UDH 6714782 ENCODE Processing Pipeline 708d90e22a8b95c08df45b267d46a6de https://www.encodeproject.org/files/ENCFF765IPM/@@download/ENCFF765IPM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF567CPX bigWig signal p-value ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF562CIX, ENCFF708PYT 1261084140 ENCODE Processing Pipeline edd43155418ef4e808a49d9fa150262c https://www.encodeproject.org/files/ENCFF567CPX/@@download/ENCFF567CPX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF503RHD bigWig fold change over control ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF562CIX, ENCFF708PYT 1227710426 ENCODE Processing Pipeline 373b72712ce2b89ca8b1e8d4fd1179f6 https://www.encodeproject.org/files/ENCFF503RHD/@@download/ENCFF503RHD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF911WIL bed narrowPeak peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF562CIX, ENCFF708PYT 6719845 ENCODE Processing Pipeline d73438711f26fe887e701be70c7526eb https://www.encodeproject.org/files/ENCFF911WIL/@@download/ENCFF911WIL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF665TLS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF911WIL 302304 ENCODE Processing Pipeline 75d436ddfe9ed7c2aa4efa77ba19ef8e https://www.encodeproject.org/files/ENCFF665TLS/@@download/ENCFF665TLS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF082LND bigBed narrowPeak peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF911WIL 13307140 ENCODE Processing Pipeline 0a61ac3f6a0c8dd54ef961a9a9bf9d8b https://www.encodeproject.org/files/ENCFF082LND/@@download/ENCFF082LND.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF885WAT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF665TLS 669385 ENCODE Processing Pipeline 78bec11b4544e2a6fb3bc0db8d00e99e https://www.encodeproject.org/files/ENCFF885WAT/@@download/ENCFF885WAT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000YKN bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VMU 2856964 Michael Snyder, Stanford 5b9d66b604496dd792b95245194b8b46 https://www.encodeproject.org/files/ENCFF000YKN/@@download/ENCFF000YKN.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YKO fastq reads ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 869032274 Michael Snyder, Stanford 82acb8294f42119da2f1923be6445652 https://www.encodeproject.org/files/ENCFF000YKO/@@download/ENCFF000YKO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YKQ bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 1 409506272 Michael Snyder, Stanford 1f446810fb1f810711e40ff638b21656 https://www.encodeproject.org/files/ENCFF000YKQ/@@download/ENCFF000YKQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YKR fastq reads ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1035790335 Michael Snyder, Stanford 25c359856f75f699e95f321667f0ed5c https://www.encodeproject.org/files/ENCFF000YKR/@@download/ENCFF000YKR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YKT bigWig signal ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 363888883 Michael Snyder, Stanford 8433bd0c23096f106fee6df61bc269a8 https://www.encodeproject.org/files/ENCFF000YKT/@@download/ENCFF000YKT.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YKU bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 1 554252374 Michael Snyder, Stanford db8c677f486d69100e01f5fdf53d34ea https://www.encodeproject.org/files/ENCFF000YKU/@@download/ENCFF000YKU.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VMU bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1199066 Michael Snyder, Stanford 41b1b33137420093e34f6c6f25dd363a https://www.encodeproject.org/files/ENCFF001VMU/@@download/ENCFF001VMU.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CWH bed narrowPeak optimal idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 521895 ENCODE Consortium Analysis Working Group 2afcc7647009b98a31ef5cc965732f63 https://www.encodeproject.org/files/ENCFF002CWH/@@download/ENCFF002CWH.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF684NFF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CWH 1206588 ENCODE Consortium a5f0af2a558200917a7a9382426af02f https://www.encodeproject.org/files/ENCFF684NFF/@@download/ENCFF684NFF.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF641HZR bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YKO, ENCFF643CGH 626076397 ENCODE Processing Pipeline d9b3ffcd70e742b3c87ee24bbde32c4f https://www.encodeproject.org/files/ENCFF641HZR/@@download/ENCFF641HZR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF191PXA bam unfiltered alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YKO, ENCFF643CGH 961917050 ENCODE Processing Pipeline dae88501b48dbcb748304a9f45777fd5 https://www.encodeproject.org/files/ENCFF191PXA/@@download/ENCFF191PXA.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF006GQZ bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YKR, ENCFF643CGH 782225387 ENCODE Processing Pipeline 3350a1e872ed7cd1b5c45b8f4a080148 https://www.encodeproject.org/files/ENCFF006GQZ/@@download/ENCFF006GQZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF936GCU bam unfiltered alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YKR, ENCFF643CGH 1167217239 ENCODE Processing Pipeline 02b5ce189604ac965faf6aa5ba4d5983 https://www.encodeproject.org/files/ENCFF936GCU/@@download/ENCFF936GCU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF895BNY bam unfiltered alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YKO, ENCFF807MUK 958896911 ENCODE Processing Pipeline 3fd5b41255926cf148e30472a74a414b https://www.encodeproject.org/files/ENCFF895BNY/@@download/ENCFF895BNY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713RWU bam unfiltered alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YKR, ENCFF807MUK 1162796529 ENCODE Processing Pipeline 82e59e489e961e8659692a82494acf8e https://www.encodeproject.org/files/ENCFF713RWU/@@download/ENCFF713RWU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF058VAU bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YKO, ENCFF807MUK 626699491 ENCODE Processing Pipeline f99c1bf8ab548f793ff2651717ebba39 https://www.encodeproject.org/files/ENCFF058VAU/@@download/ENCFF058VAU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384WMI bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YKR, ENCFF807MUK 782947503 ENCODE Processing Pipeline f8e026b76c135ba53bc351c601c79b0c https://www.encodeproject.org/files/ENCFF384WMI/@@download/ENCFF384WMI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF763KSC bigWig signal p-value ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF641HZR 408771994 ENCODE Processing Pipeline 4fce9a1123163194ebdd968005bca470 https://www.encodeproject.org/files/ENCFF763KSC/@@download/ENCFF763KSC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716DGJ bigWig signal p-value ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF006GQZ, ENCFF023NGN 471924628 ENCODE Processing Pipeline 60bb476458e3f9cad7c5afb687343212 https://www.encodeproject.org/files/ENCFF716DGJ/@@download/ENCFF716DGJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550XCM bigWig signal p-value ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF006GQZ, ENCFF023NGN, ENCFF641HZR 583389498 ENCODE Processing Pipeline ec243d188c9237985773216aeaf82600 https://www.encodeproject.org/files/ENCFF550XCM/@@download/ENCFF550XCM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF441EVB bigWig fold change over control ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF641HZR 321123770 ENCODE Processing Pipeline dd17e690e1025f76e01d9e0b92af2c87 https://www.encodeproject.org/files/ENCFF441EVB/@@download/ENCFF441EVB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF115AXB bigWig fold change over control ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF006GQZ, ENCFF023NGN 397857739 ENCODE Processing Pipeline 75c1f0b47100fb71db4a704f0f46d298 https://www.encodeproject.org/files/ENCFF115AXB/@@download/ENCFF115AXB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF677COF bigWig fold change over control ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF006GQZ, ENCFF023NGN, ENCFF641HZR 616118999 ENCODE Processing Pipeline 1b7212bfaae6202ed10c6e32be7b971c https://www.encodeproject.org/files/ENCFF677COF/@@download/ENCFF677COF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF004CLN bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF641HZR 5554111 ENCODE Processing Pipeline 665761ec4367656e32586b2c6d7c1713 https://www.encodeproject.org/files/ENCFF004CLN/@@download/ENCFF004CLN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF295SMV bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF004CLN 13030276 ENCODE Processing Pipeline c6b9dc2cb975433c918ed5c1bb78b642 https://www.encodeproject.org/files/ENCFF295SMV/@@download/ENCFF295SMV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF836QWS bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF006GQZ, ENCFF023NGN, ENCFF641HZR 6255792 ENCODE Processing Pipeline 0cf01b14e16bfe90fe5d4914f798e8bf https://www.encodeproject.org/files/ENCFF836QWS/@@download/ENCFF836QWS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF330UQJ bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF006GQZ, ENCFF023NGN 5530719 ENCODE Processing Pipeline 41bde4653f2806c740b0840f02a38a2a https://www.encodeproject.org/files/ENCFF330UQJ/@@download/ENCFF330UQJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF160USS bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF330UQJ 13143679 ENCODE Processing Pipeline 23197ed7d0b5c737effaaa5702a5ecbb https://www.encodeproject.org/files/ENCFF160USS/@@download/ENCFF160USS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF566BFG bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF836QWS 13188140 ENCODE Processing Pipeline 69a2c632d344c044f305a52c9a0c558f https://www.encodeproject.org/files/ENCFF566BFG/@@download/ENCFF566BFG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF272ZBE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF196VRG 1021530 ENCODE Processing Pipeline 47a39745b3b1b188b66a3b3e1afe389a https://www.encodeproject.org/files/ENCFF272ZBE/@@download/ENCFF272ZBE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF196VRG bed narrowPeak conservative idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF004CLN, ENCFF330UQJ, ENCFF419RSJ, ENCFF836QWS 515296 ENCODE Processing Pipeline 9affd13d5e0cf7e47ddf6b1d0d6a80f9 https://www.encodeproject.org/files/ENCFF196VRG/@@download/ENCFF196VRG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF492XUU bed narrowPeak optimal idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF004CLN, ENCFF330UQJ, ENCFF419RSJ, ENCFF836QWS 530950 ENCODE Processing Pipeline de1e6fbb2410c41327714236770bd01e https://www.encodeproject.org/files/ENCFF492XUU/@@download/ENCFF492XUU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF345ZAR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF492XUU 1046403 ENCODE Processing Pipeline 85bd7aab1869b2340a1af8664e87bc3d https://www.encodeproject.org/files/ENCFF345ZAR/@@download/ENCFF345ZAR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF262PSO bigWig fold change over control ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF058VAU, ENCFF710NTS 320716877 ENCODE Processing Pipeline 595105284e5b8203f16191e24d5f0081 https://www.encodeproject.org/files/ENCFF262PSO/@@download/ENCFF262PSO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF033VDX bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF058VAU, ENCFF710NTS 5482659 ENCODE Processing Pipeline d15682863af1bf809e031c7812eb0d88 https://www.encodeproject.org/files/ENCFF033VDX/@@download/ENCFF033VDX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF114NSQ bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165VLE 13190775 ENCODE Processing Pipeline e3fed3916fc4bf6c4855e7dcc8a3ab21 https://www.encodeproject.org/files/ENCFF114NSQ/@@download/ENCFF114NSQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF883GJZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF465JKF 1056426 ENCODE Processing Pipeline db01bb60de16985b65458a0ece8f10c1 https://www.encodeproject.org/files/ENCFF883GJZ/@@download/ENCFF883GJZ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF315VEZ bigWig signal p-value ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF058VAU, ENCFF710NTS 469136772 ENCODE Processing Pipeline f436830f065d71e74e64901414757fde https://www.encodeproject.org/files/ENCFF315VEZ/@@download/ENCFF315VEZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF517LFR bigWig signal p-value ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF384WMI, ENCFF710NTS 473194751 ENCODE Processing Pipeline 5a244053e346d00140e0f3649c3ac6b3 https://www.encodeproject.org/files/ENCFF517LFR/@@download/ENCFF517LFR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF019DFB bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF384WMI, ENCFF710NTS 5488272 ENCODE Processing Pipeline 664ac255bd20196d280131b4d8a991c6 https://www.encodeproject.org/files/ENCFF019DFB/@@download/ENCFF019DFB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818LJK bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF033VDX 12933225 ENCODE Processing Pipeline a6d79cbd20bf4e58c8110b4fe943e879 https://www.encodeproject.org/files/ENCFF818LJK/@@download/ENCFF818LJK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF866BOC bigBed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF019DFB 13129530 ENCODE Processing Pipeline 17872cd2faaaf4f43bea9c52e5bbf4a0 https://www.encodeproject.org/files/ENCFF866BOC/@@download/ENCFF866BOC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF123QDZ bigWig signal p-value ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF058VAU, ENCFF384WMI, ENCFF710NTS 583736097 ENCODE Processing Pipeline c23ec500f89a4afac0020ce1d1a0f1c4 https://www.encodeproject.org/files/ENCFF123QDZ/@@download/ENCFF123QDZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF790FHL bigWig fold change over control ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF058VAU, ENCFF384WMI, ENCFF710NTS 617596899 ENCODE Processing Pipeline fe72942ee4899b3479eda2ab8be0bd3f https://www.encodeproject.org/files/ENCFF790FHL/@@download/ENCFF790FHL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF465JKF bed narrowPeak optimal idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF019DFB, ENCFF033VDX, ENCFF165VLE 538620 ENCODE Processing Pipeline 146303efe433182be7daba2298a9ffda https://www.encodeproject.org/files/ENCFF465JKF/@@download/ENCFF465JKF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427ONC bigWig fold change over control ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF384WMI, ENCFF710NTS 391906454 ENCODE Processing Pipeline 75926e5b07b39fd694264d31f4abb517 https://www.encodeproject.org/files/ENCFF427ONC/@@download/ENCFF427ONC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF165VLE bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF058VAU, ENCFF384WMI, ENCFF710NTS 6265667 ENCODE Processing Pipeline 1fa1366a66d1a0284ddfb6071f0338be https://www.encodeproject.org/files/ENCFF165VLE/@@download/ENCFF165VLE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF596JXE bed narrowPeak conservative idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF019DFB, ENCFF033VDX, ENCFF165VLE 515085 ENCODE Processing Pipeline daaaf17f1f147738a05496c1ffb5aba4 https://www.encodeproject.org/files/ENCFF596JXE/@@download/ENCFF596JXE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388BVD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF596JXE 1020831 ENCODE Processing Pipeline cd9763415c4b1d827d6ee4ad4729b0a5 https://www.encodeproject.org/files/ENCFF388BVD/@@download/ENCFF388BVD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF482ZJO bam unfiltered alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF264IWL, ENCFF483AVN, ENCFF807MUK 5918950894 ENCODE Processing Pipeline 4d887252e0b1835d99a1a3483f90905e https://www.encodeproject.org/files/ENCFF482ZJO/@@download/ENCFF482ZJO.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF089QYI bam unfiltered alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF339NHI, ENCFF677HTA, ENCFF807MUK 9126888997 ENCODE Processing Pipeline a038a3b78d5bc8f869050685a72feba0 https://www.encodeproject.org/files/ENCFF089QYI/@@download/ENCFF089QYI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF677HTA fastq reads ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF339NHI 4270608665 Michael Snyder, Stanford 7c08b910bd627129a2cf01e143b50e21 SRA:SRR5112134 https://www.encodeproject.org/files/ENCFF677HTA/@@download/ENCFF677HTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF598DYO/, /files/ENCFF821AJH/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF483AVN fastq reads ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF264IWL 2649331300 Michael Snyder, Stanford 812820e65d1b6d0f4a8c4a9c563971e6 SRA:SRR5112133 https://www.encodeproject.org/files/ENCFF483AVN/@@download/ENCFF483AVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF598DYO/, /files/ENCFF821AJH/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF339NHI fastq reads ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF677HTA 4381958095 Michael Snyder, Stanford a774c219825c8b3eb8674b22be272408 SRA:SRR5112134 https://www.encodeproject.org/files/ENCFF339NHI/@@download/ENCFF339NHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF598DYO/, /files/ENCFF821AJH/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF264IWL fastq reads ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF483AVN 2709264473 Michael Snyder, Stanford b19924622bd07423ad4b4d89d5b56ef0 SRA:SRR5112133 https://www.encodeproject.org/files/ENCFF264IWL/@@download/ENCFF264IWL.fastq.gz Illumina HiSeq 2000 /files/ENCFF598DYO/, /files/ENCFF821AJH/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF357MEA bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF264IWL, ENCFF483AVN, ENCFF807MUK 4811183393 ENCODE Processing Pipeline ce908ce6201031d31874c73bc9e4eedb https://www.encodeproject.org/files/ENCFF357MEA/@@download/ENCFF357MEA.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF658DNV bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF339NHI, ENCFF677HTA, ENCFF807MUK 6875388800 ENCODE Processing Pipeline 1392a7f04822ded04806efa7fe388c35 https://www.encodeproject.org/files/ENCFF658DNV/@@download/ENCFF658DNV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF018SHR bigWig signal p-value ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF357MEA, ENCFF523XHJ 1135941254 ENCODE Processing Pipeline c4367b75cc7ddcbd41b17749627c1a39 https://www.encodeproject.org/files/ENCFF018SHR/@@download/ENCFF018SHR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF861LOB bigWig signal p-value ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF523XHJ, ENCFF658DNV 1420996044 ENCODE Processing Pipeline 65c1ad4c165113927af29e4b3e4809ec https://www.encodeproject.org/files/ENCFF861LOB/@@download/ENCFF861LOB.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF338KGW bigWig fold change over control ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF357MEA, ENCFF523XHJ 1194216338 ENCODE Processing Pipeline 96a50054066533e00cfb7b3493a16d08 https://www.encodeproject.org/files/ENCFF338KGW/@@download/ENCFF338KGW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF608PIL bigBed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF796QIY 13015492 ENCODE Processing Pipeline f676045bdb727bb3af334485ee6ef54d https://www.encodeproject.org/files/ENCFF608PIL/@@download/ENCFF608PIL.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF860FHJ bigBed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF490ZQW 13164982 ENCODE Processing Pipeline 81c896cd64af84fc4bca848bbe6a2aed https://www.encodeproject.org/files/ENCFF860FHJ/@@download/ENCFF860FHJ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF462HYL bigBed narrowPeak conservative idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF915SSM 282238 ENCODE Processing Pipeline 960f8844f12aef163cac4985aa100939 https://www.encodeproject.org/files/ENCFF462HYL/@@download/ENCFF462HYL.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF741INH bigWig fold change over control ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF357MEA, ENCFF523XHJ, ENCFF658DNV 1947758413 ENCODE Processing Pipeline cb9899b97e3a504e4e51604c6fb92bf4 https://www.encodeproject.org/files/ENCFF741INH/@@download/ENCFF741INH.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF393WZH bigBed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF124LKA 13028162 ENCODE Processing Pipeline e2c0161de529ae73d1d86de188aeaa9b https://www.encodeproject.org/files/ENCFF393WZH/@@download/ENCFF393WZH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF796QIY bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF523XHJ, ENCFF658DNV 7178952 ENCODE Processing Pipeline 5947fc9058236a998e643417ae7835fb https://www.encodeproject.org/files/ENCFF796QIY/@@download/ENCFF796QIY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF915SSM bed narrowPeak conservative idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF124LKA, ENCFF490ZQW, ENCFF796QIY 103537 ENCODE Processing Pipeline 4ef498e594f6dfcbb27bf3a6499dee0c https://www.encodeproject.org/files/ENCFF915SSM/@@download/ENCFF915SSM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF780UAV bigWig signal p-value ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF357MEA, ENCFF523XHJ, ENCFF658DNV 1363160985 ENCODE Processing Pipeline 7eea7d9ce63babfd55f2309055e87b64 https://www.encodeproject.org/files/ENCFF780UAV/@@download/ENCFF780UAV.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF852SWA bigWig fold change over control ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF523XHJ, ENCFF658DNV 1481381989 ENCODE Processing Pipeline c1a01207df6e4be5ddf7b4c39b68aca3 https://www.encodeproject.org/files/ENCFF852SWA/@@download/ENCFF852SWA.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF490ZQW bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF357MEA, ENCFF523XHJ 7019384 ENCODE Processing Pipeline e0167fabd2b873b50d51fa3aec537cf9 https://www.encodeproject.org/files/ENCFF490ZQW/@@download/ENCFF490ZQW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF124LKA bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF357MEA, ENCFF523XHJ, ENCFF658DNV 7356838 ENCODE Processing Pipeline a17bdc450ae440e43075d17008430cd6 https://www.encodeproject.org/files/ENCFF124LKA/@@download/ENCFF124LKA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF167HYX bed narrowPeak optimal idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF124LKA, ENCFF490ZQW, ENCFF796QIY 121570 ENCODE Processing Pipeline 38fe13495b413cb9d70bd0c99f9cfa0d https://www.encodeproject.org/files/ENCFF167HYX/@@download/ENCFF167HYX.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF358GKI bigBed narrowPeak optimal idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF167HYX 313136 ENCODE Processing Pipeline b1620523b531437783814932e7bf4be1 https://www.encodeproject.org/files/ENCFF358GKI/@@download/ENCFF358GKI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF302XKP bam unfiltered alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF264IWL, ENCFF483AVN, ENCFF643CGH 5931177012 ENCODE Processing Pipeline e22f8e6f96aa0c6187d7f86eff905734 https://www.encodeproject.org/files/ENCFF302XKP/@@download/ENCFF302XKP.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF679UCS bam unfiltered alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF339NHI, ENCFF643CGH, ENCFF677HTA 9140677706 ENCODE Processing Pipeline 22aa90fea853ddb940a8a4b2127a9ac9 https://www.encodeproject.org/files/ENCFF679UCS/@@download/ENCFF679UCS.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF709ZMI bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF264IWL, ENCFF483AVN, ENCFF643CGH 4809827254 ENCODE Processing Pipeline 8e18830b20522dec7163746dec0f9a1d https://www.encodeproject.org/files/ENCFF709ZMI/@@download/ENCFF709ZMI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF438XEX bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF339NHI, ENCFF643CGH, ENCFF677HTA 6873743019 ENCODE Processing Pipeline 8de595c9b32b96781443fb0fdb3ead09 https://www.encodeproject.org/files/ENCFF438XEX/@@download/ENCFF438XEX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF710SUG bigWig signal p-value ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF438XEX, ENCFF458FYW 1431966137 ENCODE Processing Pipeline 285709bbb1fe7a387b5bc697d115f0b7 https://www.encodeproject.org/files/ENCFF710SUG/@@download/ENCFF710SUG.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF317HSX bigWig signal p-value ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF458FYW, ENCFF709ZMI 1134157833 ENCODE Processing Pipeline bdc05eaaafc181bbd45c88a9220f0237 https://www.encodeproject.org/files/ENCFF317HSX/@@download/ENCFF317HSX.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF313KIZ bigWig signal p-value ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF438XEX, ENCFF458FYW, ENCFF709ZMI 1383000729 ENCODE Processing Pipeline 932f4861ed2144d824b3cae29711e3bb https://www.encodeproject.org/files/ENCFF313KIZ/@@download/ENCFF313KIZ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF735NYL bigWig fold change over control ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF438XEX, ENCFF458FYW 1494479226 ENCODE Processing Pipeline cfd9c412a8d2a6252921fcbedd1f7794 https://www.encodeproject.org/files/ENCFF735NYL/@@download/ENCFF735NYL.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF545JNB bigWig fold change over control ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF458FYW, ENCFF709ZMI 1223711716 ENCODE Processing Pipeline b9466cc887cdfb006854c8b8d5be21da https://www.encodeproject.org/files/ENCFF545JNB/@@download/ENCFF545JNB.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF128JAV bigWig fold change over control ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF438XEX, ENCFF458FYW, ENCFF709ZMI 1971337576 ENCODE Processing Pipeline f42b0fd74624ac2c6301824274afc6cb https://www.encodeproject.org/files/ENCFF128JAV/@@download/ENCFF128JAV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF004ADR bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF438XEX, ENCFF458FYW 7148858 ENCODE Processing Pipeline 6eff4c10b75728f02b9208ac8574bacf https://www.encodeproject.org/files/ENCFF004ADR/@@download/ENCFF004ADR.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF975ECG bigBed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF095RMB 13179040 ENCODE Processing Pipeline 95e63de8a1ac1579d185fa3e06efbba6 https://www.encodeproject.org/files/ENCFF975ECG/@@download/ENCFF975ECG.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF095RMB bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF458FYW, ENCFF709ZMI 6937957 ENCODE Processing Pipeline 4b7ce55c3c11c3a73d4d26bfa26181d6 https://www.encodeproject.org/files/ENCFF095RMB/@@download/ENCFF095RMB.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF202BBK bigBed narrowPeak conservative idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF950VDB 286312 ENCODE Processing Pipeline e3d5e020adb1ac5387f3f9cdecd535a7 https://www.encodeproject.org/files/ENCFF202BBK/@@download/ENCFF202BBK.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF839QEL bed narrowPeak optimal idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF004ADR, ENCFF095RMB, ENCFF121FFD, ENCFF419RSJ 126672 ENCODE Processing Pipeline 59818792fa40c2c3892123fb99218bb0 https://www.encodeproject.org/files/ENCFF839QEL/@@download/ENCFF839QEL.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF848GUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF839QEL 322933 ENCODE Processing Pipeline ce113d7c5b44eb56f9bc60a9346c56cf https://www.encodeproject.org/files/ENCFF848GUQ/@@download/ENCFF848GUQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF121FFD bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF438XEX, ENCFF458FYW, ENCFF709ZMI 7364037 ENCODE Processing Pipeline b1e72cc7840066f6441c7cb55462b458 https://www.encodeproject.org/files/ENCFF121FFD/@@download/ENCFF121FFD.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF103TMK bigBed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF004ADR 13045866 ENCODE Processing Pipeline 3d56ed38095556b607067b6d9cb2a3e0 https://www.encodeproject.org/files/ENCFF103TMK/@@download/ENCFF103TMK.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF950VDB bed narrowPeak conservative idr thresholded peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF004ADR, ENCFF095RMB, ENCFF121FFD, ENCFF419RSJ 105202 ENCODE Processing Pipeline 6dffb6d717979e9bb91ec8730d0aa948 https://www.encodeproject.org/files/ENCFF950VDB/@@download/ENCFF950VDB.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF588GIC bigBed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121FFD 13048384 ENCODE Processing Pipeline 5576ae1e508c4493a45f7f0df1d86c28 https://www.encodeproject.org/files/ENCFF588GIC/@@download/ENCFF588GIC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF918SCN fastq reads ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF998ZNW 2864539974 Michael Snyder, Stanford bb6702c7d5fbead3fa1a1557f365fb4d SRA:SRR6213238 https://www.encodeproject.org/files/ENCFF918SCN/@@download/ENCFF918SCN.fastq.gz Illumina HiSeq 4000 /files/ENCFF266WQH/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF998ZNW fastq reads ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF918SCN 3380378805 Michael Snyder, Stanford eaef390c42c4579d49293258df01544f SRA:SRR6213238 https://www.encodeproject.org/files/ENCFF998ZNW/@@download/ENCFF998ZNW.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZBM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF687JKE bam unfiltered alignments ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF807MUK, ENCFF918SCN, ENCFF998ZNW 5434061380 ENCODE Processing Pipeline 50e8d77b95a36b26f975b85219a79fc6 https://www.encodeproject.org/files/ENCFF687JKE/@@download/ENCFF687JKE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF675VOA bam alignments ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF807MUK, ENCFF918SCN, ENCFF998ZNW 2957500250 ENCODE Processing Pipeline 5238e3c71955a2600c49c73beb807372 https://www.encodeproject.org/files/ENCFF675VOA/@@download/ENCFF675VOA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF636BII bam unfiltered alignments ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF918SCN, ENCFF998ZNW 5431720613 ENCODE Processing Pipeline debf9299c5bf2861f00aad37dd4a38a1 https://www.encodeproject.org/files/ENCFF636BII/@@download/ENCFF636BII.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF343QUJ bam alignments ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF918SCN, ENCFF998ZNW 2959644438 ENCODE Processing Pipeline 3875a8beb4deb02e8506dfc0da5165bf https://www.encodeproject.org/files/ENCFF343QUJ/@@download/ENCFF343QUJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF876LID bigWig signal p-value ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF675VOA, ENCFF722MYF 1112221072 ENCODE Processing Pipeline 0a5e4ef9ff8d327aefb96f1071eee934 https://www.encodeproject.org/files/ENCFF876LID/@@download/ENCFF876LID.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF840VVY bigWig fold change over control ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF675VOA, ENCFF722MYF 1156012862 ENCODE Processing Pipeline 8fbb64970a32eb7bf1bf32f417b7c805 https://www.encodeproject.org/files/ENCFF840VVY/@@download/ENCFF840VVY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF425DIK bed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF675VOA, ENCFF722MYF 6648174 ENCODE Processing Pipeline 13f679f989bd340e4fbbe544ed089031 https://www.encodeproject.org/files/ENCFF425DIK/@@download/ENCFF425DIK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF132EAZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF396NYG 1057957 ENCODE Processing Pipeline 80ef8b36cf55e8048c6e51e32b0f5edc https://www.encodeproject.org/files/ENCFF132EAZ/@@download/ENCFF132EAZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF484DFL bigBed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF425DIK 13632581 ENCODE Processing Pipeline 6108dc31def2fd3960db9e1167df7e3e https://www.encodeproject.org/files/ENCFF484DFL/@@download/ENCFF484DFL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF584SAS bigWig signal p-value ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF343QUJ, ENCFF543PTH 1230188469 ENCODE Processing Pipeline 5e1a8f5732e9d514f3196457f2e1af3e https://www.encodeproject.org/files/ENCFF584SAS/@@download/ENCFF584SAS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF396NYG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF425DIK 484535 ENCODE Processing Pipeline 1d7da83ec4b89e39d9a1ca3f3d11282b https://www.encodeproject.org/files/ENCFF396NYG/@@download/ENCFF396NYG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF863VDR bigWig fold change over control ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF343QUJ, ENCFF543PTH 1146709553 ENCODE Processing Pipeline 65d9cc9da2a4f3ad2cc33ec1c23716da https://www.encodeproject.org/files/ENCFF863VDR/@@download/ENCFF863VDR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF296HMG bigBed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF932QYK 13606819 ENCODE Processing Pipeline e2c36333c51a425a45a9d636e2777793 https://www.encodeproject.org/files/ENCFF296HMG/@@download/ENCFF296HMG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF932QYK bed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF343QUJ, ENCFF543PTH 6613943 ENCODE Processing Pipeline 7b6928f5044c0f7940ffaad60c87e700 https://www.encodeproject.org/files/ENCFF932QYK/@@download/ENCFF932QYK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF016OGE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF932QYK 476664 ENCODE Processing Pipeline ab5b042dff3a2328e8ad650e21069f37 https://www.encodeproject.org/files/ENCFF016OGE/@@download/ENCFF016OGE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF228WYJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF016OGE 1048622 ENCODE Processing Pipeline ef69ab91e3ce72d5002101f067b4a612 https://www.encodeproject.org/files/ENCFF228WYJ/@@download/ENCFF228WYJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF389ZTP fastq reads ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF788KCN 3014221921 Michael Snyder, Stanford 9606dd0e56218c682853ca31213574ee SRA:SRR6213060 https://www.encodeproject.org/files/ENCFF389ZTP/@@download/ENCFF389ZTP.fastq.gz Illumina HiSeq 4000 /files/ENCFF346VXQ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF788KCN fastq reads ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF389ZTP 3464328392 Michael Snyder, Stanford 6d756ef0c6a0aebfe2bb3ba3cb71258a SRA:SRR6213060 https://www.encodeproject.org/files/ENCFF788KCN/@@download/ENCFF788KCN.fastq.gz Illumina HiSeq 4000 /files/ENCFF903FDT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF825ONH bam unfiltered alignments ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF389ZTP, ENCFF643CGH, ENCFF788KCN 5663754234 ENCODE Processing Pipeline 7688efcf1d1984a37afdd01e566aa638 https://www.encodeproject.org/files/ENCFF825ONH/@@download/ENCFF825ONH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147GTA bam alignments ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF389ZTP, ENCFF643CGH, ENCFF788KCN 3600686688 ENCODE Processing Pipeline 4b1f1d6eb819062debb873ad7f4384d9 https://www.encodeproject.org/files/ENCFF147GTA/@@download/ENCFF147GTA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF387XNI bigWig signal p-value ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF147GTA 1185928569 ENCODE Processing Pipeline ce9bf47b0a4ca02d9064311b1f263bdc https://www.encodeproject.org/files/ENCFF387XNI/@@download/ENCFF387XNI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF416EKA bigWig fold change over control ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF147GTA 1278856128 ENCODE Processing Pipeline 2f41e39dab08b000a8ca8c43435fe2f2 https://www.encodeproject.org/files/ENCFF416EKA/@@download/ENCFF416EKA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF818WPO bigBed narrowPeak peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF675VWT 11611584 ENCODE Processing Pipeline 98b4d7ecc65023050d208f06dbf9757c https://www.encodeproject.org/files/ENCFF818WPO/@@download/ENCFF818WPO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF949XEQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF635MUK 492306 ENCODE Processing Pipeline f5e0468e74af46c28da3f46f80908c39 https://www.encodeproject.org/files/ENCFF949XEQ/@@download/ENCFF949XEQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF675VWT bed narrowPeak peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF147GTA 5647547 ENCODE Processing Pipeline 7f376904f5088708f423e40fcd1f7548 https://www.encodeproject.org/files/ENCFF675VWT/@@download/ENCFF675VWT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF635MUK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF675VWT 238488 ENCODE Processing Pipeline 2879d9ce41119c3d9abc42069289b3d6 https://www.encodeproject.org/files/ENCFF635MUK/@@download/ENCFF635MUK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF395GQA bam alignments ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF389ZTP, ENCFF788KCN, ENCFF807MUK 3596058325 ENCODE Processing Pipeline e48f3787a3c7a48a52541cda2aec075c https://www.encodeproject.org/files/ENCFF395GQA/@@download/ENCFF395GQA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF455CQK bam unfiltered alignments ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF389ZTP, ENCFF788KCN, ENCFF807MUK 5664795808 ENCODE Processing Pipeline a05fcae49347b071d208dc1494872732 https://www.encodeproject.org/files/ENCFF455CQK/@@download/ENCFF455CQK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF884WCO bigWig signal p-value ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF395GQA, ENCFF662LAZ 1087303186 ENCODE Processing Pipeline 82c679158870a9b44bcaa7afb8d910e4 https://www.encodeproject.org/files/ENCFF884WCO/@@download/ENCFF884WCO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF495LKH bigWig fold change over control ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF395GQA, ENCFF662LAZ 1286592845 ENCODE Processing Pipeline 1ffe68e43aaa45c171d7da606e96d6d0 https://www.encodeproject.org/files/ENCFF495LKH/@@download/ENCFF495LKH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF621LUI bed narrowPeak peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF395GQA, ENCFF662LAZ 5648400 ENCODE Processing Pipeline 982ac4b915148cf68f610c3407a1944f https://www.encodeproject.org/files/ENCFF621LUI/@@download/ENCFF621LUI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF586ION bigBed narrowPeak peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF621LUI 11597392 ENCODE Processing Pipeline b786eba33cded35dd20d0035269be423 https://www.encodeproject.org/files/ENCFF586ION/@@download/ENCFF586ION.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF608UAY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF621LUI 235922 ENCODE Processing Pipeline 61898c1315d58aa1365b0467c74ceb07 https://www.encodeproject.org/files/ENCFF608UAY/@@download/ENCFF608UAY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF090KIH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF608UAY 489171 ENCODE Processing Pipeline a8e24b67d18d4a81d8185eda9f0f3f0b https://www.encodeproject.org/files/ENCFF090KIH/@@download/ENCFF090KIH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF506ONU fastq reads ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF113JGC 2816514550 Michael Snyder, Stanford 53400d1f51d2ed92eab26ceab38121e2 SRA:SRR6214224 https://www.encodeproject.org/files/ENCFF506ONU/@@download/ENCFF506ONU.fastq.gz Illumina HiSeq 4000 /files/ENCFF400DBC/ released antibody characterized with exemption ENCFF113JGC fastq reads ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF506ONU 3143474681 Michael Snyder, Stanford 3eaf48d81e516b6c207ce6ec94e721ee SRA:SRR6214224 https://www.encodeproject.org/files/ENCFF113JGC/@@download/ENCFF113JGC.fastq.gz Illumina HiSeq 4000 /files/ENCFF764QLI/ released antibody characterized with exemption ENCFF731RYG bam unfiltered alignments ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF113JGC, ENCFF506ONU, ENCFF807MUK 5769607730 ENCODE Processing Pipeline e0b781ee6fb8987bef4da7d3eecd8019 https://www.encodeproject.org/files/ENCFF731RYG/@@download/ENCFF731RYG.bam hg19 released antibody characterized with exemption ENCFF446BUP bam alignments ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF113JGC, ENCFF506ONU, ENCFF807MUK 4578143464 ENCODE Processing Pipeline c06d8307dbba8e86a12b276e42006857 https://www.encodeproject.org/files/ENCFF446BUP/@@download/ENCFF446BUP.bam hg19 released antibody characterized with exemption ENCFF473YUM bam unfiltered alignments ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF113JGC, ENCFF506ONU, ENCFF643CGH 5781064144 ENCODE Processing Pipeline 37e6ffff023bf2f4481255111d197a3e https://www.encodeproject.org/files/ENCFF473YUM/@@download/ENCFF473YUM.bam GRCh38 released antibody characterized with exemption ENCFF051OIH bam alignments ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF113JGC, ENCFF506ONU, ENCFF643CGH 4585545229 ENCODE Processing Pipeline bb5c44f0c86900a617e8671b6e92e218 https://www.encodeproject.org/files/ENCFF051OIH/@@download/ENCFF051OIH.bam GRCh38 released antibody characterized with exemption ENCFF710ETH bigWig signal p-value ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF051OIH, ENCFF533JZM 1314780857 ENCODE Processing Pipeline f8f146d7d7e46fb6b8cfb20134f36a08 https://www.encodeproject.org/files/ENCFF710ETH/@@download/ENCFF710ETH.bigWig GRCh38 released antibody characterized with exemption ENCFF669ELF bigWig signal p-value ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF106EBG, ENCFF446BUP 1312871032 ENCODE Processing Pipeline eca738b331b18a1a1081364f7525a308 https://www.encodeproject.org/files/ENCFF669ELF/@@download/ENCFF669ELF.bigWig hg19 released antibody characterized with exemption ENCFF971EVG bigWig fold change over control ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF051OIH, ENCFF533JZM 1425907364 ENCODE Processing Pipeline 0f928dc82f1d8b3ef8f0c157a28c8e1e https://www.encodeproject.org/files/ENCFF971EVG/@@download/ENCFF971EVG.bigWig GRCh38 released antibody characterized with exemption ENCFF374HGU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF371GSC 669091 ENCODE Processing Pipeline 9a9726c4b404b862d98dfe3e58bf28c6 https://www.encodeproject.org/files/ENCFF374HGU/@@download/ENCFF374HGU.bigBed GRCh38 released antibody characterized with exemption ENCFF939RCW bigBed narrowPeak peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF267OZD 11150013 ENCODE Processing Pipeline 2cd338612a64f9b6a72361d5779d4cdd https://www.encodeproject.org/files/ENCFF939RCW/@@download/ENCFF939RCW.bigBed GRCh38 released antibody characterized with exemption ENCFF755SZN bigWig fold change over control ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF106EBG, ENCFF446BUP 1423363490 ENCODE Processing Pipeline 76cba5f7dcb0d716df649c340897b5a3 https://www.encodeproject.org/files/ENCFF755SZN/@@download/ENCFF755SZN.bigWig hg19 released antibody characterized with exemption ENCFF267OZD bed narrowPeak peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF051OIH, ENCFF533JZM 6831030 ENCODE Processing Pipeline 4ff0b4b9d012f793db1492c743e2855a https://www.encodeproject.org/files/ENCFF267OZD/@@download/ENCFF267OZD.bed.gz GRCh38 released antibody characterized with exemption ENCFF371GSC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF267OZD, ENCFF419RSJ 281881 ENCODE Processing Pipeline 41f9d86ba68be69a736f1b8ada4d09c6 https://www.encodeproject.org/files/ENCFF371GSC/@@download/ENCFF371GSC.bed.gz GRCh38 released antibody characterized with exemption ENCFF386FNQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF422YRY 284356 ENCODE Processing Pipeline 892a0ef1f46ca2e6da2f8f72adeb0bd1 https://www.encodeproject.org/files/ENCFF386FNQ/@@download/ENCFF386FNQ.bed.gz hg19 released antibody characterized with exemption ENCFF422YRY bed narrowPeak peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF106EBG, ENCFF446BUP 6828813 ENCODE Processing Pipeline 7a37dfbbb5f162e9e432d31b5f161ea1 https://www.encodeproject.org/files/ENCFF422YRY/@@download/ENCFF422YRY.bed.gz hg19 released antibody characterized with exemption ENCFF436DTD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF386FNQ 668468 ENCODE Processing Pipeline b35056ec4bb2c7beb2d24d8836a4a07b https://www.encodeproject.org/files/ENCFF436DTD/@@download/ENCFF436DTD.bigBed hg19 released antibody characterized with exemption ENCFF257MZT bigBed narrowPeak peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF422YRY 11131929 ENCODE Processing Pipeline 4211c03dd9ccda35ebeecfaa8a5aad27 https://www.encodeproject.org/files/ENCFF257MZT/@@download/ENCFF257MZT.bigBed hg19 released antibody characterized with exemption ENCFF310NHP fastq reads ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF903PDX 2393367977 Michael Snyder, Stanford 45b984802e632e661744900af9b159da SRA:SRR6213877 https://www.encodeproject.org/files/ENCFF310NHP/@@download/ENCFF310NHP.fastq.gz Illumina HiSeq 4000 /files/ENCFF722PTT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF903PDX fastq reads ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF310NHP 2812701932 Michael Snyder, Stanford e87f17ac69aca17f8c2ee85990813e6a SRA:SRR6213877 https://www.encodeproject.org/files/ENCFF903PDX/@@download/ENCFF903PDX.fastq.gz Illumina HiSeq 4000 /files/ENCFF160JLB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF666CVV bam unfiltered alignments ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF310NHP, ENCFF643CGH, ENCFF903PDX 4720623828 ENCODE Processing Pipeline efd3d9942bb897c0bd04f0def54970d1 https://www.encodeproject.org/files/ENCFF666CVV/@@download/ENCFF666CVV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF492NGU bam alignments ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF310NHP, ENCFF643CGH, ENCFF903PDX 3272977112 ENCODE Processing Pipeline f3a992765cbb2f80b83065d7d84fc1c1 https://www.encodeproject.org/files/ENCFF492NGU/@@download/ENCFF492NGU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF828ZUP bam unfiltered alignments ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF310NHP, ENCFF807MUK, ENCFF903PDX 4715802330 ENCODE Processing Pipeline 52d58e33745e4bc7c9daf58ba0c6187e https://www.encodeproject.org/files/ENCFF828ZUP/@@download/ENCFF828ZUP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF581BEE bam alignments ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF310NHP, ENCFF807MUK, ENCFF903PDX 3268500185 ENCODE Processing Pipeline 748d9ee0694b18970403b75c7194da2d https://www.encodeproject.org/files/ENCFF581BEE/@@download/ENCFF581BEE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF476OPY bigWig signal p-value ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF492NGU, ENCFF894ZWD 1172023064 ENCODE Processing Pipeline 2f8f98b61445c573ee1ded367510bfd2 https://www.encodeproject.org/files/ENCFF476OPY/@@download/ENCFF476OPY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF593GZK bigWig signal p-value ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF581BEE 1054877770 ENCODE Processing Pipeline f78ac7bf39d69be07de5a0277e330bc4 https://www.encodeproject.org/files/ENCFF593GZK/@@download/ENCFF593GZK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF466HVV bed narrowPeak peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF492NGU, ENCFF894ZWD 6246029 ENCODE Processing Pipeline 0c85b3e4abd9baa85f10fd2a19d0e877 https://www.encodeproject.org/files/ENCFF466HVV/@@download/ENCFF466HVV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF764XKD bigWig fold change over control ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF492NGU, ENCFF894ZWD 1136006923 ENCODE Processing Pipeline 4a3b7c16ecf23908579102783741f81b https://www.encodeproject.org/files/ENCFF764XKD/@@download/ENCFF764XKD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF256TIU bigBed narrowPeak peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF466HVV 11370745 ENCODE Processing Pipeline 2b3c5cf42c68c6acffe5f550805d58ff https://www.encodeproject.org/files/ENCFF256TIU/@@download/ENCFF256TIU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF794PPJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF563GSK 729954 ENCODE Processing Pipeline 0c544b7e1cbe9512d85c558591423bc8 https://www.encodeproject.org/files/ENCFF794PPJ/@@download/ENCFF794PPJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF704OEE bed narrowPeak peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF581BEE 6258314 ENCODE Processing Pipeline 9ed8cc3ea172111e27004554c30d375a https://www.encodeproject.org/files/ENCFF704OEE/@@download/ENCFF704OEE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF231QST bigBed narrowPeak peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF704OEE 11368446 ENCODE Processing Pipeline 581f8b8425cd9966e0f3d04825f1b9d0 https://www.encodeproject.org/files/ENCFF231QST/@@download/ENCFF231QST.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF192SIL bigWig fold change over control ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF581BEE 1140190489 ENCODE Processing Pipeline ed60b173a450ec0594800a0e087427c1 https://www.encodeproject.org/files/ENCFF192SIL/@@download/ENCFF192SIL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF563GSK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF466HVV 327494 ENCODE Processing Pipeline 65defe53810f78eaf39facaa4a9187dc https://www.encodeproject.org/files/ENCFF563GSK/@@download/ENCFF563GSK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF485EPD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF704OEE 331737 ENCODE Processing Pipeline cb35ec58a6e6b76b9956f876b7b55eb4 https://www.encodeproject.org/files/ENCFF485EPD/@@download/ENCFF485EPD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF128URR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF485EPD 735163 ENCODE Processing Pipeline 3e80165d9b984bf7d4aad561460db4bd https://www.encodeproject.org/files/ENCFF128URR/@@download/ENCFF128URR.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000ZDP bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 1 503643279 Michael Snyder, Stanford bbf5fd4bcfa6ef7a65079da7248d301e https://www.encodeproject.org/files/ENCFF000ZDP/@@download/ENCFF000ZDP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZDQ bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 1 579088242 Michael Snyder, Stanford bc547c3e2a0fe94e699277bb15348e64 https://www.encodeproject.org/files/ENCFF000ZDQ/@@download/ENCFF000ZDQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZDR bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VPK 1398466 Michael Snyder, Stanford 4748775aa1844723e64792510da4e0a7 https://www.encodeproject.org/files/ENCFF000ZDR/@@download/ENCFF000ZDR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDS fastq reads ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1122255466 Michael Snyder, Stanford 4e5d9e0eb4557589617cdb2377aaa0fb https://www.encodeproject.org/files/ENCFF000ZDS/@@download/ENCFF000ZDS.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDU fastq reads ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 874537880 Michael Snyder, Stanford 48fee2fcb08e917c67ebd4a5aa3fe825 https://www.encodeproject.org/files/ENCFF000ZDU/@@download/ENCFF000ZDU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDW bigWig signal ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 400473008 Michael Snyder, Stanford cefcaa7b3dc68affc2d7743caf13312e https://www.encodeproject.org/files/ENCFF000ZDW/@@download/ENCFF000ZDW.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VPK bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 609225 Michael Snyder, Stanford f3c6590064e9f00e2d27030c95559992 https://www.encodeproject.org/files/ENCFF001VPK/@@download/ENCFF001VPK.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF537UFC bam unfiltered alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZDU, ENCFF643CGH 1020046592 ENCODE Processing Pipeline a385cee84bb8e222da9d3609b74c5e8e https://www.encodeproject.org/files/ENCFF537UFC/@@download/ENCFF537UFC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF161ZFC bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZDU, ENCFF643CGH 702389605 ENCODE Processing Pipeline f347d10e82943edddda3693258b7baf2 https://www.encodeproject.org/files/ENCFF161ZFC/@@download/ENCFF161ZFC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF718SZZ bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZDS, ENCFF643CGH 903635803 ENCODE Processing Pipeline e37e1e5a2a5ea56c22c1fe808f032dbe https://www.encodeproject.org/files/ENCFF718SZZ/@@download/ENCFF718SZZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF235TXF bam unfiltered alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZDS, ENCFF643CGH 1304645949 ENCODE Processing Pipeline 912990a3add81110ade52ba47d5959b6 https://www.encodeproject.org/files/ENCFF235TXF/@@download/ENCFF235TXF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145QPE bam unfiltered alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZDU, ENCFF807MUK 1015973327 ENCODE Processing Pipeline 678f202fcdb9c045d0016d657a50ff06 https://www.encodeproject.org/files/ENCFF145QPE/@@download/ENCFF145QPE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF996ZXG bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZDU, ENCFF807MUK 702909939 ENCODE Processing Pipeline 4ce3fcd1bb05a49d9d2f820d87fb7e06 https://www.encodeproject.org/files/ENCFF996ZXG/@@download/ENCFF996ZXG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF288WKU bam unfiltered alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZDS, ENCFF807MUK 1298980796 ENCODE Processing Pipeline cf529f14fda521988537c0b3269e407b https://www.encodeproject.org/files/ENCFF288WKU/@@download/ENCFF288WKU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF349TZM bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZDS, ENCFF807MUK 904249284 ENCODE Processing Pipeline 7f0b16d70cfb954634729119e6084cec https://www.encodeproject.org/files/ENCFF349TZM/@@download/ENCFF349TZM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF489QVZ bigWig signal p-value ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF718SZZ 598170949 ENCODE Processing Pipeline 988e8ba1899e9ae407ca0264657e6d27 https://www.encodeproject.org/files/ENCFF489QVZ/@@download/ENCFF489QVZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF771RQO bigWig signal p-value ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF161ZFC 549486673 ENCODE Processing Pipeline 2594239fd04748477ddf16f47d46504b https://www.encodeproject.org/files/ENCFF771RQO/@@download/ENCFF771RQO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF164BEN bigWig signal p-value ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF161ZFC, ENCFF718SZZ 552630688 ENCODE Processing Pipeline 421571e09ccd72a4f7580da7abca9f49 https://www.encodeproject.org/files/ENCFF164BEN/@@download/ENCFF164BEN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF409EDA bigWig fold change over control ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF718SZZ 442702037 ENCODE Processing Pipeline 66c01e19dcf09270300e32d3def1a363 https://www.encodeproject.org/files/ENCFF409EDA/@@download/ENCFF409EDA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF172IXA bigWig fold change over control ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF161ZFC 358352589 ENCODE Processing Pipeline 95855a725d9db5d6d685a6794779c4f2 https://www.encodeproject.org/files/ENCFF172IXA/@@download/ENCFF172IXA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF387NUG bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF718SZZ 4550240 ENCODE Processing Pipeline bea9176efc8c355c2d2e6de5e6edb471 https://www.encodeproject.org/files/ENCFF387NUG/@@download/ENCFF387NUG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548IGN bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF983XVD 11078934 ENCODE Processing Pipeline 02b1cf80a0b706e782dda09bbf21400b https://www.encodeproject.org/files/ENCFF548IGN/@@download/ENCFF548IGN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF739EZV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF284LLF 143055 ENCODE Processing Pipeline a4cc939685b77b14c8dd6ed21e1a1fa2 https://www.encodeproject.org/files/ENCFF739EZV/@@download/ENCFF739EZV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF478PGJ bed narrowPeak optimal idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF276XFZ, ENCFF387NUG, ENCFF419RSJ, ENCFF983XVD 51015 ENCODE Processing Pipeline e3e6d898f696b41259e0fb40a31318f4 https://www.encodeproject.org/files/ENCFF478PGJ/@@download/ENCFF478PGJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF276XFZ bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF161ZFC 4684109 ENCODE Processing Pipeline 2411bf1f92e85156767b7a8928604d30 https://www.encodeproject.org/files/ENCFF276XFZ/@@download/ENCFF276XFZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF983XVD bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF161ZFC, ENCFF718SZZ 5571476 ENCODE Processing Pipeline 524574740469d288291a71a01211529a https://www.encodeproject.org/files/ENCFF983XVD/@@download/ENCFF983XVD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF232IKX bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF387NUG 10945803 ENCODE Processing Pipeline 85e2c4cb8b93c6f71b3db832d548ebfe https://www.encodeproject.org/files/ENCFF232IKX/@@download/ENCFF232IKX.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF267EQO bigWig fold change over control ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF161ZFC, ENCFF718SZZ 692843663 ENCODE Processing Pipeline 965e987d2923b7f3db979b76ac0ca989 https://www.encodeproject.org/files/ENCFF267EQO/@@download/ENCFF267EQO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF579AMU bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF276XFZ 10811404 ENCODE Processing Pipeline 0c100f875a4c368853dc684f212dd071 https://www.encodeproject.org/files/ENCFF579AMU/@@download/ENCFF579AMU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF284LLF bed narrowPeak conservative idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF276XFZ, ENCFF387NUG, ENCFF419RSJ, ENCFF983XVD 43584 ENCODE Processing Pipeline 48cba72f13f5d32c0e02ea6d62c2666f https://www.encodeproject.org/files/ENCFF284LLF/@@download/ENCFF284LLF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF899OSC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF478PGJ 156378 ENCODE Processing Pipeline 3f7a8771dae2db5ae661128813518c3a https://www.encodeproject.org/files/ENCFF899OSC/@@download/ENCFF899OSC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF421GNC bigWig fold change over control ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF349TZM, ENCFF710NTS 442144090 ENCODE Processing Pipeline da20d0c2cfe720cf23c8e3aae362c237 https://www.encodeproject.org/files/ENCFF421GNC/@@download/ENCFF421GNC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF778LXR bigWig fold change over control ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF996ZXG 360859926 ENCODE Processing Pipeline 91dba892e130610f15121aa6cd1c3915 https://www.encodeproject.org/files/ENCFF778LXR/@@download/ENCFF778LXR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF678SGN bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF305IJI 11080166 ENCODE Processing Pipeline 6d2e31de1890811c3143ceb2ae91527d https://www.encodeproject.org/files/ENCFF678SGN/@@download/ENCFF678SGN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF029VKA bigWig fold change over control ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF349TZM, ENCFF710NTS, ENCFF996ZXG 679467662 ENCODE Processing Pipeline 72a3aec2a42f8dbb6795623d77f72a70 https://www.encodeproject.org/files/ENCFF029VKA/@@download/ENCFF029VKA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF804JPD bed narrowPeak conservative idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF305IJI, ENCFF547MRJ, ENCFF726OZS 45555 ENCODE Processing Pipeline 949fec62c4002286469a1fa4866914d2 https://www.encodeproject.org/files/ENCFF804JPD/@@download/ENCFF804JPD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF651LOC bigWig signal p-value ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF349TZM, ENCFF710NTS 545604874 ENCODE Processing Pipeline 6b6487ce60dd6dae6c006b04c53d9152 https://www.encodeproject.org/files/ENCFF651LOC/@@download/ENCFF651LOC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF726OZS bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF996ZXG 4681440 ENCODE Processing Pipeline 1dd1aa8e753206f395d457c2e4a927cc https://www.encodeproject.org/files/ENCFF726OZS/@@download/ENCFF726OZS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF305IJI bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF349TZM, ENCFF710NTS, ENCFF996ZXG 5656691 ENCODE Processing Pipeline 796dc1bfd2a78d8233e18ed7d3b2bbe7 https://www.encodeproject.org/files/ENCFF305IJI/@@download/ENCFF305IJI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF306KHI bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF547MRJ 10923671 ENCODE Processing Pipeline e3676389f5b84eaab2e1e1d99c7c52b3 https://www.encodeproject.org/files/ENCFF306KHI/@@download/ENCFF306KHI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF755NYU bigBed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF726OZS 10808248 ENCODE Processing Pipeline a7866f2160e119a5c460f00327e8fa0c https://www.encodeproject.org/files/ENCFF755NYU/@@download/ENCFF755NYU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF855VYY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF804JPD 145206 ENCODE Processing Pipeline 18b40eab35d50c1d3230f42aea368887 https://www.encodeproject.org/files/ENCFF855VYY/@@download/ENCFF855VYY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF800HHN bigWig signal p-value ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF349TZM, ENCFF710NTS, ENCFF996ZXG 552928513 ENCODE Processing Pipeline c85e09ef340524166dd0acc2741933ca https://www.encodeproject.org/files/ENCFF800HHN/@@download/ENCFF800HHN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF015SWG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF522JRK 155154 ENCODE Processing Pipeline 17b5c0d0985288707ebb2ef2b30e247b https://www.encodeproject.org/files/ENCFF015SWG/@@download/ENCFF015SWG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279FUD bigWig signal p-value ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF996ZXG 473997485 ENCODE Processing Pipeline a62957fab00c1e20113c86054a0f0366 https://www.encodeproject.org/files/ENCFF279FUD/@@download/ENCFF279FUD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF547MRJ bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF349TZM, ENCFF710NTS 4633130 ENCODE Processing Pipeline 9577c1e0d4b7c256eb256e79d11f8f85 https://www.encodeproject.org/files/ENCFF547MRJ/@@download/ENCFF547MRJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF522JRK bed narrowPeak optimal idr thresholded peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF305IJI, ENCFF547MRJ, ENCFF726OZS 51017 ENCODE Processing Pipeline 81ec05387a90d3fd3d085fdfd8e8c470 https://www.encodeproject.org/files/ENCFF522JRK/@@download/ENCFF522JRK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OAG bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OAU 1396552795 Richard Myers, HAIB 7427cc5d553e4514fb412670700960c3 https://www.encodeproject.org/files/ENCFF000OAG/@@download/ENCFF000OAG.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAH bigBed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYG 1448370 Richard Myers, HAIB d8120567e21bea58deab0fd3836a54fc https://www.encodeproject.org/files/ENCFF000OAH/@@download/ENCFF000OAH.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAI bigBed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYH 1539375 Richard Myers, HAIB 368b4fe8a494650423c14d20304df661 https://www.encodeproject.org/files/ENCFF000OAI/@@download/ENCFF000OAI.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAJ bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OAS 1232286491 Richard Myers, HAIB 3208440aa5ec3cb3a3723533ed339914 https://www.encodeproject.org/files/ENCFF000OAJ/@@download/ENCFF000OAJ.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAK bigWig raw signal ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 88252715 Richard Myers, HAIB 7fef1abc369efd946063747752ef0a9b https://www.encodeproject.org/files/ENCFF000OAK/@@download/ENCFF000OAK.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000OAM bigWig raw signal ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 583770527 Richard Myers, HAIB fc201ca115694d70e450f2217b4a936d https://www.encodeproject.org/files/ENCFF000OAM/@@download/ENCFF000OAM.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OAS fastq reads ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1496921410 Richard Myers, HAIB 8ac33e07431d08cbb560fea3bcfaee44 https://www.encodeproject.org/files/ENCFF000OAS/@@download/ENCFF000OAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF000OAU fastq reads ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1598915798 Richard Myers, HAIB 285f24737a7accbd192cb276899c4969 https://www.encodeproject.org/files/ENCFF000OAU/@@download/ENCFF000OAU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF001TYG bed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 807334 Richard Myers, HAIB 917a90c75abd7b757b65a7c76f6a641e https://www.encodeproject.org/files/ENCFF001TYG/@@download/ENCFF001TYG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TYH bed broadPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 926615 Richard Myers, HAIB 4d9cc98721dd68ccf988d8e7db1bf4e5 https://www.encodeproject.org/files/ENCFF001TYH/@@download/ENCFF001TYH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHN bed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 412959 ENCODE Consortium Analysis Working Group a185d09c2f76fcf0396be3b27be0fb25 https://www.encodeproject.org/files/ENCFF002CHN/@@download/ENCFF002CHN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF616AHY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHN 1081452 ENCODE Consortium 784b519f52a5d61df963051d40aa1182 https://www.encodeproject.org/files/ENCFF616AHY/@@download/ENCFF616AHY.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF996YTS bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF643CGH 1929967547 ENCODE Processing Pipeline 791e41c1729d4f7c7bd54638c414dbc9 https://www.encodeproject.org/files/ENCFF996YTS/@@download/ENCFF996YTS.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF349ZII bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF643CGH 1789876447 ENCODE Processing Pipeline b55dbd577f36e6b9fa41cd211b512839 https://www.encodeproject.org/files/ENCFF349ZII/@@download/ENCFF349ZII.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF579AOQ bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF643CGH 955422465 ENCODE Processing Pipeline ba49402cd62db9c5ef7e9817cc391de9 https://www.encodeproject.org/files/ENCFF579AOQ/@@download/ENCFF579AOQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF584LIV bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF643CGH 942187642 ENCODE Processing Pipeline 6c6f4d65435d3840c12d130381f54c91 https://www.encodeproject.org/files/ENCFF584LIV/@@download/ENCFF584LIV.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF339TGE bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF807MUK 951926495 ENCODE Processing Pipeline 4a3398b99803861b9dabbc1b57c6c795 https://www.encodeproject.org/files/ENCFF339TGE/@@download/ENCFF339TGE.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF522HMN bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF807MUK 1788740029 ENCODE Processing Pipeline d29a7036cef7da4fb7c3a528c50eece6 https://www.encodeproject.org/files/ENCFF522HMN/@@download/ENCFF522HMN.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF111JMU bam unfiltered alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF807MUK 1927701746 ENCODE Processing Pipeline 0f18305c0ffc17c9598042c649c7bbb3 https://www.encodeproject.org/files/ENCFF111JMU/@@download/ENCFF111JMU.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF042GNN bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF807MUK 938094989 ENCODE Processing Pipeline c57dfe52fdfa745298698489b5532805 https://www.encodeproject.org/files/ENCFF042GNN/@@download/ENCFF042GNN.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF058KOQ bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF584LIV 506540915 ENCODE Processing Pipeline aebfd6541faa18670901d8e22e9bd2f9 https://www.encodeproject.org/files/ENCFF058KOQ/@@download/ENCFF058KOQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF248EKV bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF579AOQ 528583053 ENCODE Processing Pipeline ab4f601a16683f38675ce03404be212c https://www.encodeproject.org/files/ENCFF248EKV/@@download/ENCFF248EKV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF280SAT bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF579AOQ, ENCFF584LIV 779851913 ENCODE Processing Pipeline b11d51300fb225a149ea06b104111cb2 https://www.encodeproject.org/files/ENCFF280SAT/@@download/ENCFF280SAT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF553AQC bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF579AOQ 337766015 ENCODE Processing Pipeline 1ed5ba16e2520a4fc3cf69052ed58e17 https://www.encodeproject.org/files/ENCFF553AQC/@@download/ENCFF553AQC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF610QKW bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF584LIV 6621470 ENCODE Processing Pipeline 5a5dfd9b42af8a50e9f28158631f4b89 https://www.encodeproject.org/files/ENCFF610QKW/@@download/ENCFF610QKW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF543JFC bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF610QKW 11249865 ENCODE Processing Pipeline 7a97c9d3bdab630922ad305db249ad67 https://www.encodeproject.org/files/ENCFF543JFC/@@download/ENCFF543JFC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF126PLE bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF717BRE 10825900 ENCODE Processing Pipeline aff033656781d2b2f3276a744692a689 https://www.encodeproject.org/files/ENCFF126PLE/@@download/ENCFF126PLE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF835YRM bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF579AOQ 7161694 ENCODE Processing Pipeline 4d1c8e55a81b4e7fc52c4b57e819fb44 https://www.encodeproject.org/files/ENCFF835YRM/@@download/ENCFF835YRM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF600GQL bed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF610QKW, ENCFF717BRE, ENCFF835YRM 648220 ENCODE Processing Pipeline 8fade63e00782681aecbfc71a77da0a6 https://www.encodeproject.org/files/ENCFF600GQL/@@download/ENCFF600GQL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF573ZIG bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF584LIV 342902192 ENCODE Processing Pipeline ed8110ab94db17de590fee275139f76e https://www.encodeproject.org/files/ENCFF573ZIG/@@download/ENCFF573ZIG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF647IAI bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF579AOQ, ENCFF584LIV 718129144 ENCODE Processing Pipeline 6ca156c53890f3e5725fc74c5feaa86e https://www.encodeproject.org/files/ENCFF647IAI/@@download/ENCFF647IAI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF717BRE bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF579AOQ, ENCFF584LIV 6660784 ENCODE Processing Pipeline b3f8d4b0d509136460ab916f7f89078b https://www.encodeproject.org/files/ENCFF717BRE/@@download/ENCFF717BRE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF258UYV bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF835YRM 11577055 ENCODE Processing Pipeline a0cb4b055ac85acab72a35bf26cf75c1 https://www.encodeproject.org/files/ENCFF258UYV/@@download/ENCFF258UYV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF955PHX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF213VYK 1333709 ENCODE Processing Pipeline eb6df5069b57b328fed1bc03d17560ee https://www.encodeproject.org/files/ENCFF955PHX/@@download/ENCFF955PHX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF213VYK bed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF610QKW, ENCFF717BRE, ENCFF835YRM 592324 ENCODE Processing Pipeline e0b6668afe2e03ca4077b36e853b726a https://www.encodeproject.org/files/ENCFF213VYK/@@download/ENCFF213VYK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF972JVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF600GQL 1457503 ENCODE Processing Pipeline a765472183f82a9c16ed001a88a3c3fa https://www.encodeproject.org/files/ENCFF972JVJ/@@download/ENCFF972JVJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF302YXC bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 461456031 ENCODE Processing Pipeline e1cdb7598d39de5326773e5396eaa5dd https://www.encodeproject.org/files/ENCFF302YXC/@@download/ENCFF302YXC.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF769IAK bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 338213333 ENCODE Processing Pipeline c0d238dc0581c8c832ff9699cf765da8 https://www.encodeproject.org/files/ENCFF769IAK/@@download/ENCFF769IAK.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF174PSA bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042GNN, ENCFF339TGE, ENCFF837IOW, ENCFF958RTR 850835221 ENCODE Processing Pipeline 2d8b5d9e2f73619c23b511eccc471464 https://www.encodeproject.org/files/ENCFF174PSA/@@download/ENCFF174PSA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF400TYC bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF845PQC 11143013 ENCODE Processing Pipeline 6af337bd8b5843ec3bd40b6ea809fe92 https://www.encodeproject.org/files/ENCFF400TYC/@@download/ENCFF400TYC.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF302BBG bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF252XCG 10856385 ENCODE Processing Pipeline 389958878cbb3073b803f4c19b0c54f4 https://www.encodeproject.org/files/ENCFF302BBG/@@download/ENCFF302BBG.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF125SQT bed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF123VNC, ENCFF252XCG, ENCFF845PQC 641138 ENCODE Processing Pipeline 06ace6373b4324b29c9ecfe7f0dcf980 https://www.encodeproject.org/files/ENCFF125SQT/@@download/ENCFF125SQT.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF327IZI bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 342876976 ENCODE Processing Pipeline f942fd48616cd31a26809a254b04628e https://www.encodeproject.org/files/ENCFF327IZI/@@download/ENCFF327IZI.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF123VNC bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 6673423 ENCODE Processing Pipeline 178687de91cc2f51c8b916badafb1d31 https://www.encodeproject.org/files/ENCFF123VNC/@@download/ENCFF123VNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF319WEO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF125SQT 1447767 ENCODE Processing Pipeline 7bde17976017b6eadd8f08b817907d93 https://www.encodeproject.org/files/ENCFF319WEO/@@download/ENCFF319WEO.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF390HIZ bigWig signal p-value ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 453052490 ENCODE Processing Pipeline cfaed3a81261fd28ab3688dc32b2264f https://www.encodeproject.org/files/ENCFF390HIZ/@@download/ENCFF390HIZ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF077ABG bigBed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF123VNC 11027968 ENCODE Processing Pipeline 0648900dc691225468dd438f9e76ca53 https://www.encodeproject.org/files/ENCFF077ABG/@@download/ENCFF077ABG.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF663DKN bed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF123VNC, ENCFF252XCG, ENCFF845PQC 589547 ENCODE Processing Pipeline 738c927bb59185d6c24d9ec6c22b66d3 https://www.encodeproject.org/files/ENCFF663DKN/@@download/ENCFF663DKN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF002UPS bigWig fold change over control ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042GNN, ENCFF339TGE, ENCFF837IOW, ENCFF958RTR 731222796 ENCODE Processing Pipeline 7b1fbe5d0bb0f643d0dd16f5200ad7a4 https://www.encodeproject.org/files/ENCFF002UPS/@@download/ENCFF002UPS.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF475UZP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF663DKN 1336587 ENCODE Processing Pipeline 2548a9b034b66810bde70275f05d6e73 https://www.encodeproject.org/files/ENCFF475UZP/@@download/ENCFF475UZP.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF845PQC bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 6537897 ENCODE Processing Pipeline 2322b3a07590c5f56743de44dbba206a https://www.encodeproject.org/files/ENCFF845PQC/@@download/ENCFF845PQC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF252XCG bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042GNN, ENCFF339TGE, ENCFF837IOW, ENCFF958RTR 6674976 ENCODE Processing Pipeline 1da817a9f29fdef374d269500f28904d https://www.encodeproject.org/files/ENCFF252XCG/@@download/ENCFF252XCG.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF455PUN fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF788SAX 3246283457 Michael Snyder, Stanford 0f159e1335217605ac4bfe68744100e0 SRA:SRR6213525 https://www.encodeproject.org/files/ENCFF455PUN/@@download/ENCFF455PUN.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF801ZZV fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF249RTD 4288142530 Michael Snyder, Stanford 9cd89801da1fc6e6c806622291ffe020 SRA:SRR6213526 https://www.encodeproject.org/files/ENCFF801ZZV/@@download/ENCFF801ZZV.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF249RTD fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF801ZZV 3540937411 Michael Snyder, Stanford 2451c40de9cc40f6823921903f89493d SRA:SRR6213526 https://www.encodeproject.org/files/ENCFF249RTD/@@download/ENCFF249RTD.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF788SAX fastq reads ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF455PUN 3982561971 Michael Snyder, Stanford bc3a91f2425c493102142c7fcd040eee SRA:SRR6213525 https://www.encodeproject.org/files/ENCFF788SAX/@@download/ENCFF788SAX.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF032EMH bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF788SAX, ENCFF807MUK 4291813145 ENCODE Processing Pipeline 9706617d46fa660edb5f9b670f07425b https://www.encodeproject.org/files/ENCFF032EMH/@@download/ENCFF032EMH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF588PRI bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF788SAX, ENCFF807MUK 6916853827 ENCODE Processing Pipeline 9d28304bebb4318fb979c4c90dcbd419 https://www.encodeproject.org/files/ENCFF588PRI/@@download/ENCFF588PRI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF778KDH bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF801ZZV, ENCFF807MUK 7366167719 ENCODE Processing Pipeline 5da30a61a84367434484119365faa7cc https://www.encodeproject.org/files/ENCFF778KDH/@@download/ENCFF778KDH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF566BBU bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF801ZZV, ENCFF807MUK 5294110385 ENCODE Processing Pipeline 7482089cbec252e2cec78b07578fcf1e https://www.encodeproject.org/files/ENCFF566BBU/@@download/ENCFF566BBU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF862UTF bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF643CGH, ENCFF788SAX 6919476129 ENCODE Processing Pipeline a8c4237944d573298ce2ffddd95ef2e8 https://www.encodeproject.org/files/ENCFF862UTF/@@download/ENCFF862UTF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF723MRH bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF643CGH, ENCFF788SAX 4298680582 ENCODE Processing Pipeline e01a5e39195a0b92867fbd7d2abf2ae2 https://www.encodeproject.org/files/ENCFF723MRH/@@download/ENCFF723MRH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF106ICW bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF643CGH, ENCFF801ZZV 5303027342 ENCODE Processing Pipeline effd3b4185048a8199530bfaa9f792b9 https://www.encodeproject.org/files/ENCFF106ICW/@@download/ENCFF106ICW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF503JBL bam unfiltered alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF643CGH, ENCFF801ZZV 7368523120 ENCODE Processing Pipeline 72b44cad1b795b60440ec979813ab629 https://www.encodeproject.org/files/ENCFF503JBL/@@download/ENCFF503JBL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF702TJG bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF723MRH 1263875167 ENCODE Processing Pipeline 995a1297131398276be1bf26fdb763cb https://www.encodeproject.org/files/ENCFF702TJG/@@download/ENCFF702TJG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF459IKA bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF723MRH 1349175441 ENCODE Processing Pipeline 1712f606d8d8da2c8e27fae46af09790 https://www.encodeproject.org/files/ENCFF459IKA/@@download/ENCFF459IKA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF451ABM bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR 1779351195 ENCODE Processing Pipeline e8bfd6cd77ce0946ebc09b4c0b065177 https://www.encodeproject.org/files/ENCFF451ABM/@@download/ENCFF451ABM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF736LSE bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR 1839750126 ENCODE Processing Pipeline 2efc1555593a10969a7080a930d1cc4e https://www.encodeproject.org/files/ENCFF736LSE/@@download/ENCFF736LSE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF828IPR bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR, ENCFF723MRH 2335021134 ENCODE Processing Pipeline 8ac206b6d17277c981539fbb2618fa48 https://www.encodeproject.org/files/ENCFF828IPR/@@download/ENCFF828IPR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF196DNQ bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF723MRH 6996043 ENCODE Processing Pipeline 2ffb2cedd14f5f1fae7cb765a66d82a3 https://www.encodeproject.org/files/ENCFF196DNQ/@@download/ENCFF196DNQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF475NYK bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF196DNQ 12735326 ENCODE Processing Pipeline 09f939330f7888261570e1dd3044efc2 https://www.encodeproject.org/files/ENCFF475NYK/@@download/ENCFF475NYK.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF018NNF bed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF161QAS, ENCFF196DNQ, ENCFF419RSJ, ENCFF928JXU 1284817 ENCODE Processing Pipeline 78c0e4753d04b238fc07e4ebe5a02984 https://www.encodeproject.org/files/ENCFF018NNF/@@download/ENCFF018NNF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF173EHE bigBed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF018NNF 2498238 ENCODE Processing Pipeline 1b06aa6e88ddeb00ffb5b39f08f199e7 https://www.encodeproject.org/files/ENCFF173EHE/@@download/ENCFF173EHE.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF036HEK bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR, ENCFF723MRH 2088960165 ENCODE Processing Pipeline dc208d21f874a0d4ed5fbfb341bb3f3c https://www.encodeproject.org/files/ENCFF036HEK/@@download/ENCFF036HEK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF928JXU bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR 7299325 ENCODE Processing Pipeline 3e67ac88348d8b816a8ca50ab94eeade https://www.encodeproject.org/files/ENCFF928JXU/@@download/ENCFF928JXU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF161QAS bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF106ICW, ENCFF322NTO, ENCFF666ATR, ENCFF723MRH 7315778 ENCODE Processing Pipeline 3ced11e76e28be3cde77c51cba484ca0 https://www.encodeproject.org/files/ENCFF161QAS/@@download/ENCFF161QAS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF194OGF bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF928JXU 13079958 ENCODE Processing Pipeline 890134646890b9e25939706f1fb60d4f https://www.encodeproject.org/files/ENCFF194OGF/@@download/ENCFF194OGF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF486OQM bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF161QAS 12925777 ENCODE Processing Pipeline e1a9819d93f58b381d6741e6fe00339d https://www.encodeproject.org/files/ENCFF486OQM/@@download/ENCFF486OQM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF967IRT bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 1175344129 ENCODE Processing Pipeline 17bb6ac8d572633c06f9d2a2c9f2e43a https://www.encodeproject.org/files/ENCFF967IRT/@@download/ENCFF967IRT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF041DRU bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 1853302288 ENCODE Processing Pipeline f2872ee76367f23409712b53e7d809df https://www.encodeproject.org/files/ENCFF041DRU/@@download/ENCFF041DRU.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF413ANK bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF032EMH, ENCFF566BBU, ENCFF592WAL, ENCFF901CND 7205542 ENCODE Processing Pipeline f41e12ddd3b6c4ee6da2140d0feee1ea https://www.encodeproject.org/files/ENCFF413ANK/@@download/ENCFF413ANK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF620ZOJ bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 1694977994 ENCODE Processing Pipeline 1424caee852f60b7b8ac7a3c79cc73d9 https://www.encodeproject.org/files/ENCFF620ZOJ/@@download/ENCFF620ZOJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF405CHV bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF032EMH, ENCFF566BBU, ENCFF592WAL, ENCFF901CND 2371523180 ENCODE Processing Pipeline 572cd28e94c31dfb7693818fa305b1f1 https://www.encodeproject.org/files/ENCFF405CHV/@@download/ENCFF405CHV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF173IKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF809OOE 2439723 ENCODE Processing Pipeline 051398d17fc702e9aeda829719529d28 https://www.encodeproject.org/files/ENCFF173IKQ/@@download/ENCFF173IKQ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF606RFP bigWig fold change over control ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 1268578082 ENCODE Processing Pipeline c716b2475f5b3f5fb42565cba92d69aa https://www.encodeproject.org/files/ENCFF606RFP/@@download/ENCFF606RFP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF176OVL bigWig signal p-value ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF032EMH, ENCFF566BBU, ENCFF592WAL, ENCFF901CND 2096363364 ENCODE Processing Pipeline 3f2ae845c6cc32737a9a43cd8f91fdd2 https://www.encodeproject.org/files/ENCFF176OVL/@@download/ENCFF176OVL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF526LHJ bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 7179543 ENCODE Processing Pipeline fe18eb06d6f26c1cde22b675086c68d4 https://www.encodeproject.org/files/ENCFF526LHJ/@@download/ENCFF526LHJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF963HCJ bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 7164736 ENCODE Processing Pipeline 039c388c95fdaa3efb9c4ed44ccee9df https://www.encodeproject.org/files/ENCFF963HCJ/@@download/ENCFF963HCJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF431IKZ bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF963HCJ 12918542 ENCODE Processing Pipeline 0de536d9bc6bac5026b0405d39f3edff https://www.encodeproject.org/files/ENCFF431IKZ/@@download/ENCFF431IKZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF499ECU bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF526LHJ 12954768 ENCODE Processing Pipeline dabb470486504128f4256f829fb8d586 https://www.encodeproject.org/files/ENCFF499ECU/@@download/ENCFF499ECU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF943RZR bigBed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF413ANK 12789142 ENCODE Processing Pipeline c62410df13820412f95b16d18c3cb53b https://www.encodeproject.org/files/ENCFF943RZR/@@download/ENCFF943RZR.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF809OOE bed narrowPeak optimal idr thresholded peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF413ANK, ENCFF526LHJ, ENCFF963HCJ 1251501 ENCODE Processing Pipeline 9dc6f420639e0a265f3f179b6b42713a https://www.encodeproject.org/files/ENCFF809OOE/@@download/ENCFF809OOE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF116KHO fastq reads ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 1 101 paired-ended 1 ENCFF536FQC 2749275020 Michael Snyder, Stanford 22b32c16d82e2ffdad1a4a8d619d6ffa https://www.encodeproject.org/files/ENCFF116KHO/@@download/ENCFF116KHO.fastq.gz Illumina HiSeq 4000 /files/ENCFF683BRZ/ released experiment not submitted to GEO ENCFF799EIX fastq reads ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 1 101 paired-ended 1 ENCFF298TOW 2366146816 Michael Snyder, Stanford b8f0bd77bfd0d7871503690c2357781a https://www.encodeproject.org/files/ENCFF799EIX/@@download/ENCFF799EIX.fastq.gz Illumina HiSeq 4000 /files/ENCFF337YMF/ released experiment not submitted to GEO ENCFF298TOW fastq reads ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 1 101 paired-ended 2 ENCFF799EIX 2492387879 Michael Snyder, Stanford 495dd2b4c3b4b854b23eb4bab498e64b https://www.encodeproject.org/files/ENCFF298TOW/@@download/ENCFF298TOW.fastq.gz Illumina HiSeq 4000 /files/ENCFF025UZU/ released experiment not submitted to GEO ENCFF536FQC fastq reads ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 1 101 paired-ended 2 ENCFF116KHO 2866202376 Michael Snyder, Stanford 12abee5acebffccf551e647ed0b4e9f2 https://www.encodeproject.org/files/ENCFF536FQC/@@download/ENCFF536FQC.fastq.gz Illumina HiSeq 4000 /files/ENCFF419BSA/ released experiment not submitted to GEO ENCFF461FNB bam unfiltered alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF298TOW, ENCFF643CGH, ENCFF799EIX 4330875306 ENCODE Processing Pipeline 749f5ce93ab385081b39781d8dabc128 https://www.encodeproject.org/files/ENCFF461FNB/@@download/ENCFF461FNB.bam GRCh38 released experiment not submitted to GEO ENCFF843ZUV bam unfiltered alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF116KHO, ENCFF536FQC, ENCFF807MUK 5064645572 ENCODE Processing Pipeline c567979d205be63629a75b0bfb592b1d https://www.encodeproject.org/files/ENCFF843ZUV/@@download/ENCFF843ZUV.bam hg19 released experiment not submitted to GEO ENCFF455LUX bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF298TOW, ENCFF799EIX, ENCFF807MUK 3302617368 ENCODE Processing Pipeline b5262da70603ce62777d8e862c1d7a7e https://www.encodeproject.org/files/ENCFF455LUX/@@download/ENCFF455LUX.bam hg19 released experiment not submitted to GEO ENCFF892EFT bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF298TOW, ENCFF643CGH, ENCFF799EIX 3305168089 ENCODE Processing Pipeline 9237ebe644dc10f0f78fbacb93b50612 https://www.encodeproject.org/files/ENCFF892EFT/@@download/ENCFF892EFT.bam GRCh38 released experiment not submitted to GEO ENCFF299JJF bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF116KHO, ENCFF536FQC, ENCFF643CGH 3972138969 ENCODE Processing Pipeline 1b033205be00fc5b41d7571c3d23141b https://www.encodeproject.org/files/ENCFF299JJF/@@download/ENCFF299JJF.bam GRCh38 released experiment not submitted to GEO ENCFF912DFS bam unfiltered alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF298TOW, ENCFF799EIX, ENCFF807MUK 4329642546 ENCODE Processing Pipeline 195bc5b1bd22bda13fd9d69367a1de9b https://www.encodeproject.org/files/ENCFF912DFS/@@download/ENCFF912DFS.bam hg19 released experiment not submitted to GEO ENCFF747YRH bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF116KHO, ENCFF536FQC, ENCFF807MUK 3969732816 ENCODE Processing Pipeline f5b4affc8d06ea234bdb4dfc24608c47 https://www.encodeproject.org/files/ENCFF747YRH/@@download/ENCFF747YRH.bam hg19 released experiment not submitted to GEO ENCFF268SAF bam unfiltered alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF116KHO, ENCFF536FQC, ENCFF643CGH 5067673475 ENCODE Processing Pipeline c5f0cf0e175edcfa4004ba88c3abb03e https://www.encodeproject.org/files/ENCFF268SAF/@@download/ENCFF268SAF.bam GRCh38 released experiment not submitted to GEO ENCFF066VVE bigWig signal p-value ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF475ANU, ENCFF892EFT 1242455320 ENCODE Processing Pipeline b7308d1dd8159d75a5d3323d6460fbf2 https://www.encodeproject.org/files/ENCFF066VVE/@@download/ENCFF066VVE.bigWig GRCh38 released experiment not submitted to GEO ENCFF290VWW bigWig signal p-value ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF299JJF, ENCFF304BGC 1202915576 ENCODE Processing Pipeline f2262c0c1dc217cfc90ce84c9448736f https://www.encodeproject.org/files/ENCFF290VWW/@@download/ENCFF290VWW.bigWig GRCh38 released experiment not submitted to GEO ENCFF962GJT bigWig signal p-value ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF299JJF, ENCFF304BGC, ENCFF475ANU, ENCFF892EFT 1662975960 ENCODE Processing Pipeline d86d6eeaa9bcc6442e558cad21430d20 https://www.encodeproject.org/files/ENCFF962GJT/@@download/ENCFF962GJT.bigWig GRCh38 released experiment not submitted to GEO ENCFF544VEU bigWig fold change over control ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF475ANU, ENCFF892EFT 1030727581 ENCODE Processing Pipeline bd2a00a882368809dd4665c4942e6724 https://www.encodeproject.org/files/ENCFF544VEU/@@download/ENCFF544VEU.bigWig GRCh38 released experiment not submitted to GEO ENCFF244GTB bigWig fold change over control ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF299JJF, ENCFF304BGC 1310932886 ENCODE Processing Pipeline c5e1e9d28a62686cb3002e4c56b5ee35 https://www.encodeproject.org/files/ENCFF244GTB/@@download/ENCFF244GTB.bigWig GRCh38 released experiment not submitted to GEO ENCFF589UYV bigWig fold change over control ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF299JJF, ENCFF304BGC, ENCFF475ANU, ENCFF892EFT 2174202150 ENCODE Processing Pipeline d792ba4e58276c680d704f993dcac64d https://www.encodeproject.org/files/ENCFF589UYV/@@download/ENCFF589UYV.bigWig GRCh38 released experiment not submitted to GEO ENCFF232YWT bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF475ANU, ENCFF892EFT 6315804 ENCODE Processing Pipeline 2fda112634b4df29c5a7058ed4d44c44 https://www.encodeproject.org/files/ENCFF232YWT/@@download/ENCFF232YWT.bed.gz GRCh38 released experiment not submitted to GEO ENCFF509HVO bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF299JJF, ENCFF304BGC 6562011 ENCODE Processing Pipeline db03605dbc335c8ec805f671d2cc1ff4 https://www.encodeproject.org/files/ENCFF509HVO/@@download/ENCFF509HVO.bed.gz GRCh38 released experiment not submitted to GEO ENCFF691KZX bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF299JJF, ENCFF304BGC, ENCFF475ANU, ENCFF892EFT 7016750 ENCODE Processing Pipeline 7fc1a004f71626818ba3f2f7fea1eb1e https://www.encodeproject.org/files/ENCFF691KZX/@@download/ENCFF691KZX.bed.gz GRCh38 released experiment not submitted to GEO ENCFF702TZG bigBed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF232YWT 14033639 ENCODE Processing Pipeline 7329c64b42a09e5fef2f90f984ecb922 https://www.encodeproject.org/files/ENCFF702TZG/@@download/ENCFF702TZG.bigBed GRCh38 released experiment not submitted to GEO ENCFF406MNY bigBed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF509HVO 11728185 ENCODE Processing Pipeline e573609e6c9e07e9786c3d6197f217b5 https://www.encodeproject.org/files/ENCFF406MNY/@@download/ENCFF406MNY.bigBed GRCh38 released experiment not submitted to GEO ENCFF451SIL bigBed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF691KZX 14029849 ENCODE Processing Pipeline 5980120b622e2ac166519876512c2e7b https://www.encodeproject.org/files/ENCFF451SIL/@@download/ENCFF451SIL.bigBed GRCh38 released experiment not submitted to GEO ENCFF933GGM bed narrowPeak conservative idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF232YWT, ENCFF419RSJ, ENCFF509HVO, ENCFF691KZX 1040093 ENCODE Processing Pipeline 6a8817a2508e7070fa393dd3f4f65c23 https://www.encodeproject.org/files/ENCFF933GGM/@@download/ENCFF933GGM.bed.gz GRCh38 released experiment not submitted to GEO ENCFF256FKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF933GGM 2066373 ENCODE Processing Pipeline 2e12ce19100152aaaa2edb89038f08ac https://www.encodeproject.org/files/ENCFF256FKJ/@@download/ENCFF256FKJ.bigBed GRCh38 released experiment not submitted to GEO ENCFF060WTK bed narrowPeak optimal idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF232YWT, ENCFF419RSJ, ENCFF509HVO, ENCFF691KZX 1068585 ENCODE Processing Pipeline 0d4067d1113ac30a83c0f0b0ae5af691 https://www.encodeproject.org/files/ENCFF060WTK/@@download/ENCFF060WTK.bed.gz GRCh38 released experiment not submitted to GEO ENCFF382AFR bigBed narrowPeak optimal idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF060WTK 2117372 ENCODE Processing Pipeline c400b66742a33cdf33a89e951a4f0bce https://www.encodeproject.org/files/ENCFF382AFR/@@download/ENCFF382AFR.bigBed GRCh38 released experiment not submitted to GEO ENCFF865CIX bigWig signal p-value ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF455LUX, ENCFF475BTD, ENCFF475WZW, ENCFF747YRH 1825384815 ENCODE Processing Pipeline cf4477d2fd7075a61d5873533f03be88 https://www.encodeproject.org/files/ENCFF865CIX/@@download/ENCFF865CIX.bigWig hg19 released experiment not submitted to GEO ENCFF147EFG bigWig fold change over control ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF475BTD, ENCFF747YRH 1301089229 ENCODE Processing Pipeline 989550a3750dace0b99dbd6143093017 https://www.encodeproject.org/files/ENCFF147EFG/@@download/ENCFF147EFG.bigWig hg19 released experiment not submitted to GEO ENCFF099YNN bigWig fold change over control ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF455LUX, ENCFF475BTD, ENCFF475WZW, ENCFF747YRH 2176180281 ENCODE Processing Pipeline 8fc047e08e4fa410663d6e1f34d4e567 https://www.encodeproject.org/files/ENCFF099YNN/@@download/ENCFF099YNN.bigWig hg19 released experiment not submitted to GEO ENCFF007ACV bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF455LUX, ENCFF475BTD, ENCFF475WZW, ENCFF747YRH 6986452 ENCODE Processing Pipeline 35d3d32e92bcaef8022c32805c34fde7 https://www.encodeproject.org/files/ENCFF007ACV/@@download/ENCFF007ACV.bed.gz hg19 released experiment not submitted to GEO ENCFF633IHZ bed narrowPeak optimal idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF001TDO, ENCFF007ACV, ENCFF239HMM, ENCFF244MXM 1060208 ENCODE Processing Pipeline 5075db80d4e5d5c13519931167353be7 https://www.encodeproject.org/files/ENCFF633IHZ/@@download/ENCFF633IHZ.bed.gz hg19 released experiment not submitted to GEO ENCFF363PMI bigBed narrowPeak optimal idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF633IHZ 2100051 ENCODE Processing Pipeline f14278ea4b90c41c6bd4b4c43f4a60ca https://www.encodeproject.org/files/ENCFF363PMI/@@download/ENCFF363PMI.bigBed hg19 released experiment not submitted to GEO ENCFF330PCP bigWig signal p-value ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF455LUX, ENCFF475WZW 1048393790 ENCODE Processing Pipeline cae2fca73fdf3de3a9efd9ac2494ac4f https://www.encodeproject.org/files/ENCFF330PCP/@@download/ENCFF330PCP.bigWig hg19 released experiment not submitted to GEO ENCFF282IIF bigWig signal p-value ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF475BTD, ENCFF747YRH 1196214874 ENCODE Processing Pipeline 1e024514e9b042b770af7b640c90bfb4 https://www.encodeproject.org/files/ENCFF282IIF/@@download/ENCFF282IIF.bigWig hg19 released experiment not submitted to GEO ENCFF148MKC bigWig fold change over control ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF455LUX, ENCFF475WZW 1040769775 ENCODE Processing Pipeline b6552093757e38cb3bcfae00535e2d66 https://www.encodeproject.org/files/ENCFF148MKC/@@download/ENCFF148MKC.bigWig hg19 released experiment not submitted to GEO ENCFF244MXM bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF455LUX, ENCFF475WZW 6257292 ENCODE Processing Pipeline 3822814854158c3c3cc21756e9bedc22 https://www.encodeproject.org/files/ENCFF244MXM/@@download/ENCFF244MXM.bed.gz hg19 released experiment not submitted to GEO ENCFF239HMM bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF475BTD, ENCFF747YRH 6521714 ENCODE Processing Pipeline 3fbc012afa2e16179811ce82e7d23b19 https://www.encodeproject.org/files/ENCFF239HMM/@@download/ENCFF239HMM.bed.gz hg19 released experiment not submitted to GEO ENCFF182IJY bigBed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF244MXM 13940718 ENCODE Processing Pipeline 517bde6817410fe283ac82fe24eff0f7 https://www.encodeproject.org/files/ENCFF182IJY/@@download/ENCFF182IJY.bigBed hg19 released experiment not submitted to GEO ENCFF520BCN bigBed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF239HMM 11670895 ENCODE Processing Pipeline c9bdba33dac06192a9a4d495ed88ca4a https://www.encodeproject.org/files/ENCFF520BCN/@@download/ENCFF520BCN.bigBed hg19 released experiment not submitted to GEO ENCFF323DJW bigBed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF007ACV 13981489 ENCODE Processing Pipeline 297a4f96ff496af61b086b6248d3569a https://www.encodeproject.org/files/ENCFF323DJW/@@download/ENCFF323DJW.bigBed hg19 released experiment not submitted to GEO ENCFF908BOL bed narrowPeak conservative idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF001TDO, ENCFF007ACV, ENCFF239HMM, ENCFF244MXM 1032636 ENCODE Processing Pipeline 8e28a86bf1edcafa4334a9d49a9c34c1 https://www.encodeproject.org/files/ENCFF908BOL/@@download/ENCFF908BOL.bed.gz hg19 released experiment not submitted to GEO ENCFF418CML bigBed narrowPeak conservative idr thresholded peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF908BOL 2051397 ENCODE Processing Pipeline 17069a78f4bb7eeaf0af5b832e574025 https://www.encodeproject.org/files/ENCFF418CML/@@download/ENCFF418CML.bigBed hg19 released experiment not submitted to GEO ENCFF870PPB fastq reads ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF548RDN 2698301778 Michael Snyder, Stanford 46ee78b283b765c29b585652b2dd036b https://www.encodeproject.org/files/ENCFF870PPB/@@download/ENCFF870PPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF615EAA fastq reads ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF839WCB 2410970390 Michael Snyder, Stanford 3f16bd0643b0452cc5e34bcce62c23b9 https://www.encodeproject.org/files/ENCFF615EAA/@@download/ENCFF615EAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF548RDN fastq reads ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF870PPB 2629757402 Michael Snyder, Stanford da6352b5e78c90a32050b9f4f037b037 https://www.encodeproject.org/files/ENCFF548RDN/@@download/ENCFF548RDN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF839WCB fastq reads ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF615EAA 2345044950 Michael Snyder, Stanford ea8dfbfb3a027a6674c9c615e68503c7 https://www.encodeproject.org/files/ENCFF839WCB/@@download/ENCFF839WCB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF100JTY bam unfiltered alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF548RDN, ENCFF643CGH, ENCFF870PPB 5870699738 ENCODE Processing Pipeline 52e368edcfb465f1808ac74915ab015e https://www.encodeproject.org/files/ENCFF100JTY/@@download/ENCFF100JTY.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF010LCB bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF615EAA, ENCFF643CGH, ENCFF839WCB 4404928343 ENCODE Processing Pipeline b119cba897ac79f7b5adba434d6b0739 https://www.encodeproject.org/files/ENCFF010LCB/@@download/ENCFF010LCB.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF226YSY bam unfiltered alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF615EAA, ENCFF643CGH, ENCFF839WCB 5285555811 ENCODE Processing Pipeline 91029a83e9230cc647dc0c036607d973 https://www.encodeproject.org/files/ENCFF226YSY/@@download/ENCFF226YSY.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF175WBA bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF548RDN, ENCFF643CGH, ENCFF870PPB 4843140583 ENCODE Processing Pipeline 4f556d73f455328c4920f9b50de6d750 https://www.encodeproject.org/files/ENCFF175WBA/@@download/ENCFF175WBA.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF666EWZ bigWig signal p-value ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF010LCB, ENCFF426RDP 1092715367 ENCODE Processing Pipeline 8337375ff706f7bb3f8414f4717ff2df https://www.encodeproject.org/files/ENCFF666EWZ/@@download/ENCFF666EWZ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF256TVJ bigWig signal p-value ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF175WBA, ENCFF291AFY 1017672748 ENCODE Processing Pipeline 966753297f755956d28a316df4752b27 https://www.encodeproject.org/files/ENCFF256TVJ/@@download/ENCFF256TVJ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF647CCJ bigWig signal p-value ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010LCB, ENCFF175WBA, ENCFF291AFY, ENCFF426RDP 1781209255 ENCODE Processing Pipeline c4b407329bcb3986f864b25f81c7050f https://www.encodeproject.org/files/ENCFF647CCJ/@@download/ENCFF647CCJ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF097EUA bigWig fold change over control ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF010LCB, ENCFF426RDP 1060070765 ENCODE Processing Pipeline 3d1172226a27e19a419d42074e1aded2 https://www.encodeproject.org/files/ENCFF097EUA/@@download/ENCFF097EUA.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF300ECY bigWig fold change over control ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF175WBA, ENCFF291AFY 1143561162 ENCODE Processing Pipeline e83a13ab830bca994e63404abbe03580 https://www.encodeproject.org/files/ENCFF300ECY/@@download/ENCFF300ECY.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF722QMK bigWig fold change over control ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010LCB, ENCFF175WBA, ENCFF291AFY, ENCFF426RDP 2030754177 ENCODE Processing Pipeline b177bf2f8c9f5bf3e51c53b0846c531b https://www.encodeproject.org/files/ENCFF722QMK/@@download/ENCFF722QMK.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF969GEX bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF010LCB, ENCFF426RDP 5982586 ENCODE Processing Pipeline a119f8997ceafa61281418392c62ce1a https://www.encodeproject.org/files/ENCFF969GEX/@@download/ENCFF969GEX.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF776BHL bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF175WBA, ENCFF291AFY 6123284 ENCODE Processing Pipeline 324595596ec583f9d948d8063b02d1ee https://www.encodeproject.org/files/ENCFF776BHL/@@download/ENCFF776BHL.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF278KIH bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010LCB, ENCFF175WBA, ENCFF291AFY, ENCFF426RDP 7088530 ENCODE Processing Pipeline 3cb7bfdf3e3a3463ddfc7bc8a460a6b2 https://www.encodeproject.org/files/ENCFF278KIH/@@download/ENCFF278KIH.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF392CPN bigBed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF969GEX 11082043 ENCODE Processing Pipeline 8ed76fdc6f718018954b0754c0b3142d https://www.encodeproject.org/files/ENCFF392CPN/@@download/ENCFF392CPN.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF991VQC bigBed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF776BHL 11050936 ENCODE Processing Pipeline afa93381f26d01bd6845c4e2bef0d18c https://www.encodeproject.org/files/ENCFF991VQC/@@download/ENCFF991VQC.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF007OYR bigBed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF278KIH 13122110 ENCODE Processing Pipeline 89082388415e02a886a36e6de6bc0b45 https://www.encodeproject.org/files/ENCFF007OYR/@@download/ENCFF007OYR.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF624IHX bed narrowPeak conservative idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF278KIH, ENCFF419RSJ, ENCFF776BHL, ENCFF969GEX 23340 ENCODE Processing Pipeline 54d9a2489e7ba52c6146a4fa552e80de https://www.encodeproject.org/files/ENCFF624IHX/@@download/ENCFF624IHX.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF552XHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF624IHX 113425 ENCODE Processing Pipeline 357964abaf0e1b0bdf2edea6a438f1bb https://www.encodeproject.org/files/ENCFF552XHJ/@@download/ENCFF552XHJ.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF525RRP bed narrowPeak optimal idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF278KIH, ENCFF419RSJ, ENCFF776BHL, ENCFF969GEX 51926 ENCODE Processing Pipeline 3711f08c8007c4f2b216d18575775d24 https://www.encodeproject.org/files/ENCFF525RRP/@@download/ENCFF525RRP.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF341ORD bigBed narrowPeak optimal idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF525RRP 169092 ENCODE Processing Pipeline a9c93a4b01710fb0ab2205ae741fd2ea https://www.encodeproject.org/files/ENCFF341ORD/@@download/ENCFF341ORD.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF067RHE bam unfiltered alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF615EAA, ENCFF807MUK, ENCFF839WCB 5275686382 ENCODE Processing Pipeline 1072a78e471809744a1c729650ef9244 https://www.encodeproject.org/files/ENCFF067RHE/@@download/ENCFF067RHE.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF105FOK bam unfiltered alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF548RDN, ENCFF807MUK, ENCFF870PPB 5860641117 ENCODE Processing Pipeline ba6103d3e2e89dd1406645d3a0071c90 https://www.encodeproject.org/files/ENCFF105FOK/@@download/ENCFF105FOK.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF849SJW bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF615EAA, ENCFF807MUK, ENCFF839WCB 4398912575 ENCODE Processing Pipeline 68634282fa27a8898fac98a2cba9d50d https://www.encodeproject.org/files/ENCFF849SJW/@@download/ENCFF849SJW.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF188BAD bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF548RDN, ENCFF807MUK, ENCFF870PPB 4836550638 ENCODE Processing Pipeline fbb4cd9c0716e8aad6f57f0360a9ee21 https://www.encodeproject.org/files/ENCFF188BAD/@@download/ENCFF188BAD.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF097NQM bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF188BAD, ENCFF583FAG, ENCFF849SJW 7077756 ENCODE Processing Pipeline edb66451608dd75461236bfce336b390 https://www.encodeproject.org/files/ENCFF097NQM/@@download/ENCFF097NQM.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF154PYA bigBed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF049BZC 11026797 ENCODE Processing Pipeline 191210de5fbafc7d5858042802458c2f https://www.encodeproject.org/files/ENCFF154PYA/@@download/ENCFF154PYA.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF495QMN bigBed narrowPeak optimal idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF806GXB 162946 ENCODE Processing Pipeline 77b7ac44c08b981781874c9b0e1107dd https://www.encodeproject.org/files/ENCFF495QMN/@@download/ENCFF495QMN.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF158FNB bigWig fold change over control ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF849SJW 1066682526 ENCODE Processing Pipeline 004ae894ee8cecf97d3e40b26ead173c https://www.encodeproject.org/files/ENCFF158FNB/@@download/ENCFF158FNB.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF185PMB bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF849SJW 5967820 ENCODE Processing Pipeline 1e60f0a907c08d633271b076d87add89 https://www.encodeproject.org/files/ENCFF185PMB/@@download/ENCFF185PMB.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF398PXO bigBed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF185PMB 11056351 ENCODE Processing Pipeline b982293bb04824d43ec2c02897080bf7 https://www.encodeproject.org/files/ENCFF398PXO/@@download/ENCFF398PXO.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF128PEB bigBed narrowPeak conservative idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF505NQY 106880 ENCODE Processing Pipeline fa5f18ef32cf304ca1593338b3e4344d https://www.encodeproject.org/files/ENCFF128PEB/@@download/ENCFF128PEB.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF360OBT bigWig signal p-value ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF188BAD 1094436593 ENCODE Processing Pipeline f008412d2ac48efc65230feb95acd94e https://www.encodeproject.org/files/ENCFF360OBT/@@download/ENCFF360OBT.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF610IQW bigWig signal p-value ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF188BAD, ENCFF583FAG, ENCFF849SJW 1569115850 ENCODE Processing Pipeline bdaed2b797f43d758460a6c302bcab1c https://www.encodeproject.org/files/ENCFF610IQW/@@download/ENCFF610IQW.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF049BZC bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF188BAD 6041492 ENCODE Processing Pipeline 96094173bb2a049f4f99fca32ea65bf8 https://www.encodeproject.org/files/ENCFF049BZC/@@download/ENCFF049BZC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF591PXC bigBed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF097NQM 13104406 ENCODE Processing Pipeline 737212726675390d4e79d0a61743ce66 https://www.encodeproject.org/files/ENCFF591PXC/@@download/ENCFF591PXC.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF505NQY bed narrowPeak conservative idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF049BZC, ENCFF097NQM, ENCFF185PMB 21276 ENCODE Processing Pipeline c93c6d34c0dcc73a773c6012d9550700 https://www.encodeproject.org/files/ENCFF505NQY/@@download/ENCFF505NQY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF025WID bigWig signal p-value ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF849SJW 996192936 ENCODE Processing Pipeline 3a828772cfd4792aad4c35c5bb122ce9 https://www.encodeproject.org/files/ENCFF025WID/@@download/ENCFF025WID.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF747MUC bigWig fold change over control ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF188BAD 1141160811 ENCODE Processing Pipeline 7c7c331e54376422cd0e57c3c26a50f1 https://www.encodeproject.org/files/ENCFF747MUC/@@download/ENCFF747MUC.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF019KQK bigWig fold change over control ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF188BAD, ENCFF583FAG, ENCFF849SJW 2040136614 ENCODE Processing Pipeline 80b418eb74025d514c7ca33504d5ee8f https://www.encodeproject.org/files/ENCFF019KQK/@@download/ENCFF019KQK.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF806GXB bed narrowPeak optimal idr thresholded peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF049BZC, ENCFF097NQM, ENCFF185PMB 50235 ENCODE Processing Pipeline e634275de9914bf4b87fc88c30cdd481 https://www.encodeproject.org/files/ENCFF806GXB/@@download/ENCFF806GXB.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF248TRL fastq reads ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF543ODV 2847788453 Michael Snyder, Stanford 4f53fb43465006af6201cb02fefe6f25 SRA:SRR6214103 https://www.encodeproject.org/files/ENCFF248TRL/@@download/ENCFF248TRL.fastq.gz Illumina HiSeq 4000 /files/ENCFF564CEO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF543ODV fastq reads ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF248TRL 3076726505 Michael Snyder, Stanford 2d46bfbb68e6610739b0eaeb37726990 SRA:SRR6214103 https://www.encodeproject.org/files/ENCFF543ODV/@@download/ENCFF543ODV.fastq.gz Illumina HiSeq 4000 /files/ENCFF496PKK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF134TXS bam alignments ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF248TRL, ENCFF543ODV, ENCFF807MUK 3478777116 ENCODE Processing Pipeline 541a893750db54c8a2a8fcccdda42728 https://www.encodeproject.org/files/ENCFF134TXS/@@download/ENCFF134TXS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF450XOP bam unfiltered alignments ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF248TRL, ENCFF543ODV, ENCFF807MUK 5326262292 ENCODE Processing Pipeline 4d94dac1d959c54ec7dc5ecdc173cbd8 https://www.encodeproject.org/files/ENCFF450XOP/@@download/ENCFF450XOP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF165MQP bam unfiltered alignments ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF248TRL, ENCFF543ODV, ENCFF643CGH 5326204164 ENCODE Processing Pipeline 73e18e2e523687b59c6dbed27bfaf883 https://www.encodeproject.org/files/ENCFF165MQP/@@download/ENCFF165MQP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF415FHO bam alignments ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF248TRL, ENCFF543ODV, ENCFF643CGH 3482055748 ENCODE Processing Pipeline 0406d4d92201e2c376cce89a27404ed9 https://www.encodeproject.org/files/ENCFF415FHO/@@download/ENCFF415FHO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF206NOW bigWig signal p-value ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF134TXS, ENCFF472GUK 967116634 ENCODE Processing Pipeline 07670476facb23088046246410b41476 https://www.encodeproject.org/files/ENCFF206NOW/@@download/ENCFF206NOW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF420LPH bigBed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF240CUH 13828981 ENCODE Processing Pipeline 6e420d0f5370d692874a3e6ae4b7a52b https://www.encodeproject.org/files/ENCFF420LPH/@@download/ENCFF420LPH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF668DIE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF761JIU 1096568 ENCODE Processing Pipeline 0b04cdb310bf8f9af3343d5a2c000543 https://www.encodeproject.org/files/ENCFF668DIE/@@download/ENCFF668DIE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF439YBZ bigWig fold change over control ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF134TXS, ENCFF472GUK 1145513076 ENCODE Processing Pipeline fdc49e707d5188319949db78b8bf9a43 https://www.encodeproject.org/files/ENCFF439YBZ/@@download/ENCFF439YBZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF240CUH bed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF134TXS, ENCFF472GUK 6440167 ENCODE Processing Pipeline f63e36ef8a94a89e79f64f0f475475af https://www.encodeproject.org/files/ENCFF240CUH/@@download/ENCFF240CUH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF761JIU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF240CUH 621392 ENCODE Processing Pipeline 22916e6d5db3f56535ec1daef61748fc https://www.encodeproject.org/files/ENCFF761JIU/@@download/ENCFF761JIU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF312XFH bigWig signal p-value ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF415FHO, ENCFF640XYK 1165080775 ENCODE Processing Pipeline a83a70095d7ce3a788e21c4eaffcda4b https://www.encodeproject.org/files/ENCFF312XFH/@@download/ENCFF312XFH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF946ALH bed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF415FHO, ENCFF640XYK 6434084 ENCODE Processing Pipeline 9cf7c27f0f6616e510f049af5e4ccba1 https://www.encodeproject.org/files/ENCFF946ALH/@@download/ENCFF946ALH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF701FWP bigBed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF946ALH 13838090 ENCODE Processing Pipeline 3b3e7d3cdcaf49fc1564d7f199ab9ba3 https://www.encodeproject.org/files/ENCFF701FWP/@@download/ENCFF701FWP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF661IIS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF946ALH 612114 ENCODE Processing Pipeline 7236890214943b71926b7dbc8ac428e9 https://www.encodeproject.org/files/ENCFF661IIS/@@download/ENCFF661IIS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF052XJF bigWig fold change over control ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF415FHO, ENCFF640XYK 1139919327 ENCODE Processing Pipeline bf22eea14460738d528219b5171f3af5 https://www.encodeproject.org/files/ENCFF052XJF/@@download/ENCFF052XJF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728TMD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF661IIS 1085934 ENCODE Processing Pipeline d20a38e08cc0a9b8ce02b78e8c60a040 https://www.encodeproject.org/files/ENCFF728TMD/@@download/ENCFF728TMD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000YBW fastq reads ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 698143311 Michael Snyder, Stanford da6477eb86f8f9706650ed6b38c61312 https://www.encodeproject.org/files/ENCFF000YBW/@@download/ENCFF000YBW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCS/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YBS bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 1 585809459 Michael Snyder, Stanford 408334bd1597703e66271f3f97252b57 https://www.encodeproject.org/files/ENCFF000YBS/@@download/ENCFF000YBS.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YBT bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VLM 305153 Michael Snyder, Stanford c5107c775e2ecfaffc3ca3342e384ad5 https://www.encodeproject.org/files/ENCFF000YBT/@@download/ENCFF000YBT.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YBU fastq reads ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1029469842 Michael Snyder, Stanford e521ea4904e2bb64a45f549f19ece328 https://www.encodeproject.org/files/ENCFF000YBU/@@download/ENCFF000YBU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCQ/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YBY bigWig signal ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 497605000 Michael Snyder, Stanford c7eafeb50d05af46a54c38acb37e1196 https://www.encodeproject.org/files/ENCFF000YBY/@@download/ENCFF000YBY.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YBZ bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 1 906720924 Michael Snyder, Stanford b5c3f171f38b55ea8efafc4bbc8a1643 https://www.encodeproject.org/files/ENCFF000YBZ/@@download/ENCFF000YBZ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VLM bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 125224 Michael Snyder, Stanford ce2b5d33002312a7285df4f2a5999cd0 https://www.encodeproject.org/files/ENCFF001VLM/@@download/ENCFF001VLM.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF140BYS bam unfiltered alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YBW, ENCFF643CGH 902052029 ENCODE Processing Pipeline dc373230da9adf526c668a606d0ecf34 https://www.encodeproject.org/files/ENCFF140BYS/@@download/ENCFF140BYS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF424IYB bam unfiltered alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YBU, ENCFF643CGH 1155537575 ENCODE Processing Pipeline b60121561da5b1acc1b7a1cb6e30833b https://www.encodeproject.org/files/ENCFF424IYB/@@download/ENCFF424IYB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF069JVY bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YBW, ENCFF643CGH 608578475 ENCODE Processing Pipeline 9d01315cd5f75bbff4ed67424655d073 https://www.encodeproject.org/files/ENCFF069JVY/@@download/ENCFF069JVY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF537IEQ bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YBU, ENCFF643CGH 789853345 ENCODE Processing Pipeline 00f6bd72182d554479285c349fdc71c7 https://www.encodeproject.org/files/ENCFF537IEQ/@@download/ENCFF537IEQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF386FGC bam unfiltered alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YBW, ENCFF807MUK 897531920 ENCODE Processing Pipeline d10c6002fa7163a63673894827114eb4 https://www.encodeproject.org/files/ENCFF386FGC/@@download/ENCFF386FGC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF767XMC bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YBW, ENCFF807MUK 609026558 ENCODE Processing Pipeline a656cf8ab7d0447cfbf7c0e09fdb7c8b https://www.encodeproject.org/files/ENCFF767XMC/@@download/ENCFF767XMC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF582YQH bam unfiltered alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YBU, ENCFF807MUK 1149864796 ENCODE Processing Pipeline c76d4989736019b47e7ed4a3fc2e8099 https://www.encodeproject.org/files/ENCFF582YQH/@@download/ENCFF582YQH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF437KCG bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YBU, ENCFF807MUK 790393719 ENCODE Processing Pipeline f412960703e53677f7fd8a2118e00f01 https://www.encodeproject.org/files/ENCFF437KCG/@@download/ENCFF437KCG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF793YSZ bigWig signal p-value ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF494UKO, ENCFF537IEQ, ENCFF823WOO 717659813 ENCODE Processing Pipeline 76e124c1ac510ad784a7ca607e24ac5e https://www.encodeproject.org/files/ENCFF793YSZ/@@download/ENCFF793YSZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF929PWE bigWig signal p-value ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF069JVY, ENCFF494UKO, ENCFF823WOO 581852552 ENCODE Processing Pipeline 91334cfb1a853868b5b56f49fc736b01 https://www.encodeproject.org/files/ENCFF929PWE/@@download/ENCFF929PWE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF463LQZ bigWig signal p-value ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF069JVY, ENCFF494UKO, ENCFF537IEQ, ENCFF823WOO 738167306 ENCODE Processing Pipeline 7cc0b32b0a26af0438971e581e66dc26 https://www.encodeproject.org/files/ENCFF463LQZ/@@download/ENCFF463LQZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF103ORN bigWig fold change over control ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF494UKO, ENCFF537IEQ, ENCFF823WOO 518098379 ENCODE Processing Pipeline 45a74128e271fa28f25f4a10134a7ab8 https://www.encodeproject.org/files/ENCFF103ORN/@@download/ENCFF103ORN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF506EFY bigWig fold change over control ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF069JVY, ENCFF494UKO, ENCFF823WOO 395456787 ENCODE Processing Pipeline 690a13c298b415c97bee67055c69a90e https://www.encodeproject.org/files/ENCFF506EFY/@@download/ENCFF506EFY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF842VSX bigWig fold change over control ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF069JVY, ENCFF494UKO, ENCFF537IEQ, ENCFF823WOO 800227662 ENCODE Processing Pipeline f964c1bf4303508c4e7c297a1142076f https://www.encodeproject.org/files/ENCFF842VSX/@@download/ENCFF842VSX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF956XJH bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF494UKO, ENCFF537IEQ, ENCFF823WOO 5505279 ENCODE Processing Pipeline 368f223b002e32f4bd41427b629758d7 https://www.encodeproject.org/files/ENCFF956XJH/@@download/ENCFF956XJH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF395SZI bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF069JVY, ENCFF494UKO, ENCFF823WOO 5787071 ENCODE Processing Pipeline b0482846b107ad22f278217b01565a78 https://www.encodeproject.org/files/ENCFF395SZI/@@download/ENCFF395SZI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF621DJC bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF069JVY, ENCFF494UKO, ENCFF537IEQ, ENCFF823WOO 6715616 ENCODE Processing Pipeline eea8462eaf414bc106c846c1f4e1f2c4 https://www.encodeproject.org/files/ENCFF621DJC/@@download/ENCFF621DJC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF495GCJ bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF395SZI 13132146 ENCODE Processing Pipeline 1e033865b1b063604250d7ccc8385642 https://www.encodeproject.org/files/ENCFF495GCJ/@@download/ENCFF495GCJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF455UCR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF510QXG 345707 ENCODE Processing Pipeline c1d82cdb3b8a797667976b399c8415b7 https://www.encodeproject.org/files/ENCFF455UCR/@@download/ENCFF455UCR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF063KCU bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF956XJH 13372432 ENCODE Processing Pipeline 725642d4331d1f3aab8164d007603c92 https://www.encodeproject.org/files/ENCFF063KCU/@@download/ENCFF063KCU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF647ALK bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF621DJC 13240314 ENCODE Processing Pipeline 2c9588f47c3f55bcd80d31ea1942cce7 https://www.encodeproject.org/files/ENCFF647ALK/@@download/ENCFF647ALK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF382EZV bed narrowPeak conservative idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF395SZI, ENCFF419RSJ, ENCFF621DJC, ENCFF956XJH 64510 ENCODE Processing Pipeline 847707a440384df4000c677d9cd5b371 https://www.encodeproject.org/files/ENCFF382EZV/@@download/ENCFF382EZV.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF400AMS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF382EZV 229229 ENCODE Processing Pipeline a353fcb6aff39721fd659d11ac5fe980 https://www.encodeproject.org/files/ENCFF400AMS/@@download/ENCFF400AMS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF510QXG bed narrowPeak optimal idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF395SZI, ENCFF419RSJ, ENCFF621DJC, ENCFF956XJH 117923 ENCODE Processing Pipeline aafc424d8bb59034af1036b189199e67 https://www.encodeproject.org/files/ENCFF510QXG/@@download/ENCFF510QXG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF850HDA bigWig signal p-value ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG 663489360 ENCODE Processing Pipeline ce349a6866734e4cd414e08b872399eb https://www.encodeproject.org/files/ENCFF850HDA/@@download/ENCFF850HDA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498LEJ bigWig fold change over control ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG 526503291 ENCODE Processing Pipeline 1f4f3bf6d96e47b4362e6df29ab9710c https://www.encodeproject.org/files/ENCFF498LEJ/@@download/ENCFF498LEJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF391ZQV bigWig signal p-value ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF767XMC 671988928 ENCODE Processing Pipeline 8bdd4c6a6bcbfd7d915527a03b41e2ce https://www.encodeproject.org/files/ENCFF391ZQV/@@download/ENCFF391ZQV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427NVF bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG 5560724 ENCODE Processing Pipeline c9ae08bdfc6341f26f1b5c93bb3e3c2e https://www.encodeproject.org/files/ENCFF427NVF/@@download/ENCFF427NVF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF587OKN bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF427NVF 13361234 ENCODE Processing Pipeline 7e58c5cf41daf495cb82ee1d2f6eeb05 https://www.encodeproject.org/files/ENCFF587OKN/@@download/ENCFF587OKN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF763GNI bigWig fold change over control ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG, ENCFF767XMC 801477773 ENCODE Processing Pipeline 681bd721e80a6a2672d57eed622ff5f1 https://www.encodeproject.org/files/ENCFF763GNI/@@download/ENCFF763GNI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF441IFB bed narrowPeak optimal idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF427NVF, ENCFF668AVT, ENCFF888HHD 122821 ENCODE Processing Pipeline 9b32725c31092d45f18381db86e3eefa https://www.encodeproject.org/files/ENCFF441IFB/@@download/ENCFF441IFB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF322KDR bigWig signal p-value ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG, ENCFF767XMC 726603346 ENCODE Processing Pipeline 07d5125cd2833f8542520809d36e53ce https://www.encodeproject.org/files/ENCFF322KDR/@@download/ENCFF322KDR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF005IGZ bigWig fold change over control ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF767XMC 410403576 ENCODE Processing Pipeline c579a339a38138c5ecdf35a8b19285c7 https://www.encodeproject.org/files/ENCFF005IGZ/@@download/ENCFF005IGZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF888HHD bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF767XMC 5914961 ENCODE Processing Pipeline af20eb5c75bc8a737204c9a91711e095 https://www.encodeproject.org/files/ENCFF888HHD/@@download/ENCFF888HHD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF705XFA bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF888HHD 13176272 ENCODE Processing Pipeline 97a22dfa13d14dabaccac2e58dfb5426 https://www.encodeproject.org/files/ENCFF705XFA/@@download/ENCFF705XFA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF524UUE bigBed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF668AVT 13197963 ENCODE Processing Pipeline c89875f9bfdd42ae07cd6bedfbe00008 https://www.encodeproject.org/files/ENCFF524UUE/@@download/ENCFF524UUE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF387CJR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF300XYU 235903 ENCODE Processing Pipeline 43e9068aa696be3cbc492c6b272f5c6a https://www.encodeproject.org/files/ENCFF387CJR/@@download/ENCFF387CJR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF687OMC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF441IFB 352561 ENCODE Processing Pipeline cdcb8fc70e5d8687984fe0aaf067882d https://www.encodeproject.org/files/ENCFF687OMC/@@download/ENCFF687OMC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF668AVT bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG, ENCFF767XMC 6771914 ENCODE Processing Pipeline da7f1406e24545dcf1434af8003ebd01 https://www.encodeproject.org/files/ENCFF668AVT/@@download/ENCFF668AVT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF300XYU bed narrowPeak conservative idr thresholded peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF427NVF, ENCFF668AVT, ENCFF888HHD 68450 ENCODE Processing Pipeline f11444dd586ac151f88eabd793c8f631 https://www.encodeproject.org/files/ENCFF300XYU/@@download/ENCFF300XYU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF915DUI fastq reads ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 1 100 paired-ended 2 ENCFF745FWK 2397511832 Michael Snyder, Stanford d71917fe50d44a6eb8349067c58a63d5 SRA:SRR6213385 https://www.encodeproject.org/files/ENCFF915DUI/@@download/ENCFF915DUI.fastq.gz Illumina HiSeq 4000 /files/ENCFF709DOA/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF745FWK fastq reads ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 1 100 paired-ended 1 ENCFF915DUI 2202457425 Michael Snyder, Stanford 8896ab4a89de205987155b51216d56c6 SRA:SRR6213385 https://www.encodeproject.org/files/ENCFF745FWK/@@download/ENCFF745FWK.fastq.gz Illumina HiSeq 4000 /files/ENCFF992BQY/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF735HGI bam unfiltered alignments ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 100 ENCFF745FWK, ENCFF807MUK, ENCFF915DUI 4154697700 ENCODE Processing Pipeline a3621ea581c5cc87816cca676d15273e https://www.encodeproject.org/files/ENCFF735HGI/@@download/ENCFF735HGI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF304JLC bam alignments ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 100 ENCFF745FWK, ENCFF807MUK, ENCFF915DUI 2481625400 ENCODE Processing Pipeline 8e75cf8824fde721f5be2c3c9de0b7fb https://www.encodeproject.org/files/ENCFF304JLC/@@download/ENCFF304JLC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF874SPI bam alignments ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 100 ENCFF643CGH, ENCFF745FWK, ENCFF915DUI 2483293189 ENCODE Processing Pipeline cf1a21f8205427edb3b5efaab016d954 https://www.encodeproject.org/files/ENCFF874SPI/@@download/ENCFF874SPI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF983OQB bam unfiltered alignments ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 100 ENCFF643CGH, ENCFF745FWK, ENCFF915DUI 4152636376 ENCODE Processing Pipeline b4e7ef2f7aca87df6a59be597dcd423b https://www.encodeproject.org/files/ENCFF983OQB/@@download/ENCFF983OQB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF582KCR bigWig signal p-value ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF304JLC, ENCFF940ZHR 1073324898 ENCODE Processing Pipeline ab8e00e12cf219d93c7a1309e4f7367c https://www.encodeproject.org/files/ENCFF582KCR/@@download/ENCFF582KCR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF581HZK bigWig fold change over control ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF304JLC, ENCFF940ZHR 1088587723 ENCODE Processing Pipeline 88beb51fe6a3baf4f6d132087160e79e https://www.encodeproject.org/files/ENCFF581HZK/@@download/ENCFF581HZK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF488FUJ bigBed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF005FQK 13487193 ENCODE Processing Pipeline a69647ec8b1c8c842a57b5044ec4e9c3 https://www.encodeproject.org/files/ENCFF488FUJ/@@download/ENCFF488FUJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF005FQK bed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF304JLC, ENCFF940ZHR 6751907 ENCODE Processing Pipeline 75e5a27a47da2d88059b6c23b5480bc1 https://www.encodeproject.org/files/ENCFF005FQK/@@download/ENCFF005FQK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF407FUL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF001TDO, ENCFF005FQK 673336 ENCODE Processing Pipeline 0ba02b2ab90945696243b29146e01e5d https://www.encodeproject.org/files/ENCFF407FUL/@@download/ENCFF407FUL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF610GMA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF407FUL 1407353 ENCODE Processing Pipeline 89e86cccccc4c0840b94fbc1509b4b66 https://www.encodeproject.org/files/ENCFF610GMA/@@download/ENCFF610GMA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF545STA bigWig signal p-value ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF874SPI, ENCFF987CPP 1062168036 ENCODE Processing Pipeline f51fa75380abae459d12df663d5cc6a5 https://www.encodeproject.org/files/ENCFF545STA/@@download/ENCFF545STA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF725SHA bigWig fold change over control ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF874SPI, ENCFF987CPP 1088921133 ENCODE Processing Pipeline c4f55ae9b4d25b15a1247777b4b88d2d https://www.encodeproject.org/files/ENCFF725SHA/@@download/ENCFF725SHA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF071RNS bed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF874SPI, ENCFF987CPP 6786226 ENCODE Processing Pipeline 80c80eaa5ab61ffda5a8992c84ac1cab https://www.encodeproject.org/files/ENCFF071RNS/@@download/ENCFF071RNS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF411ILP bigBed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF071RNS 13537136 ENCODE Processing Pipeline 01e659b06ad6fbeeb8ce8035b3dee219 https://www.encodeproject.org/files/ENCFF411ILP/@@download/ENCFF411ILP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF237VLQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF071RNS, ENCFF419RSJ 686437 ENCODE Processing Pipeline 5ff575b79d4899888f3ae4d504de5e60 https://www.encodeproject.org/files/ENCFF237VLQ/@@download/ENCFF237VLQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF967NUG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF237VLQ 1425645 ENCODE Processing Pipeline d937e031bed99a32f8ce6c9d5dd224b4 https://www.encodeproject.org/files/ENCFF967NUG/@@download/ENCFF967NUG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF000VQG bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VDS 1574019 Michael Snyder, Stanford ae59fa56b05819f675939eb5e07fbbce https://www.encodeproject.org/files/ENCFF000VQG/@@download/ENCFF000VQG.bigBed hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQH bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 1 634150531 Michael Snyder, Stanford 3e6940de775b1d9636899e7c17e06e09 https://www.encodeproject.org/files/ENCFF000VQH/@@download/ENCFF000VQH.bam hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VQI fastq reads ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1125466136 Michael Snyder, Stanford 3ea5583427bae38f81e5a2c8f3ab0aeb https://www.encodeproject.org/files/ENCFF000VQI/@@download/ENCFF000VQI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPI/ released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQK fastq reads ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1074731451 Michael Snyder, Stanford caecba61abaaff06ae53d9b6ae282dcd https://www.encodeproject.org/files/ENCFF000VQK/@@download/ENCFF000VQK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPK/ released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQM bigWig signal ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 438354900 Michael Snyder, Stanford a9fad45e1334e24dd23744ef7babd167 https://www.encodeproject.org/files/ENCFF000VQM/@@download/ENCFF000VQM.bigWig hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VQN bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 1 609538625 Michael Snyder, Stanford f8f070f0eaa1d46c11a323eb3a34cdcb https://www.encodeproject.org/files/ENCFF000VQN/@@download/ENCFF000VQN.bam hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VDS bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 621155 Michael Snyder, Stanford 44c2e53cbe9efb147cd2bba28129e945 https://www.encodeproject.org/files/ENCFF001VDS/@@download/ENCFF001VDS.bed.gz hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002COG bed narrowPeak optimal idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 604014 ENCODE Consortium Analysis Working Group cbd0c10b980cd8865823f5b8742e1b4c https://www.encodeproject.org/files/ENCFF002COG/@@download/ENCFF002COG.bed.gz hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF699BLK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COG 1204842 ENCODE Consortium 9c3f3c170f9c716f8f548c9055a73ff7 https://www.encodeproject.org/files/ENCFF699BLK/@@download/ENCFF699BLK.bigBed hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF670MRT bam unfiltered alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQK, ENCFF643CGH 1229917740 ENCODE Processing Pipeline 7528e6fce11c295dbf10e4b6259c83fb https://www.encodeproject.org/files/ENCFF670MRT/@@download/ENCFF670MRT.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF287VUW bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQK, ENCFF643CGH 846701506 ENCODE Processing Pipeline 918d005ace505f7572156a8589389909 https://www.encodeproject.org/files/ENCFF287VUW/@@download/ENCFF287VUW.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF520FBS bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQI, ENCFF643CGH 871897671 ENCODE Processing Pipeline ec143f195758e98747d98be0e00fdbda https://www.encodeproject.org/files/ENCFF520FBS/@@download/ENCFF520FBS.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF443LIY bam unfiltered alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQI, ENCFF643CGH 1277919337 ENCODE Processing Pipeline 72d427da7fec8fe9a36629b90ecc8bb6 https://www.encodeproject.org/files/ENCFF443LIY/@@download/ENCFF443LIY.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF460MAA bam unfiltered alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQK, ENCFF807MUK 1224338534 ENCODE Processing Pipeline 7446391e484da61333cd4e8b2a7bb5a2 https://www.encodeproject.org/files/ENCFF460MAA/@@download/ENCFF460MAA.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF835ZEE bam unfiltered alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQI, ENCFF807MUK 1272478998 ENCODE Processing Pipeline 8c38afb0999a37e623f39ec53aa12ebd https://www.encodeproject.org/files/ENCFF835ZEE/@@download/ENCFF835ZEE.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF954WQD bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQK, ENCFF807MUK 846820945 ENCODE Processing Pipeline c3be77f669d59e14e9dd1d31e0d02009 https://www.encodeproject.org/files/ENCFF954WQD/@@download/ENCFF954WQD.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF931GZJ bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQI, ENCFF807MUK 872005360 ENCODE Processing Pipeline b29dccbd58a97c44f8857cf93dae4e55 https://www.encodeproject.org/files/ENCFF931GZJ/@@download/ENCFF931GZJ.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF286PAA bigWig signal p-value ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF520FBS, ENCFF777NWU, ENCFF857MFM 713854798 ENCODE Processing Pipeline fefa3c1a33ba9d1603d70d7992bab797 https://www.encodeproject.org/files/ENCFF286PAA/@@download/ENCFF286PAA.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF867GSQ bigWig signal p-value ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287VUW, ENCFF520FBS, ENCFF777NWU, ENCFF857MFM 835006938 ENCODE Processing Pipeline 50762a06ad0d6ee6cd6822c8cc0c616e https://www.encodeproject.org/files/ENCFF867GSQ/@@download/ENCFF867GSQ.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF564LJF bigWig signal p-value ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287VUW, ENCFF777NWU, ENCFF857MFM 587674981 ENCODE Processing Pipeline 362cc5f739b4332fe4f739ddbfd142e8 https://www.encodeproject.org/files/ENCFF564LJF/@@download/ENCFF564LJF.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF785XZN bigWig fold change over control ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF520FBS, ENCFF777NWU, ENCFF857MFM 522326853 ENCODE Processing Pipeline eb765ec42781e25f9ef76657660c027d https://www.encodeproject.org/files/ENCFF785XZN/@@download/ENCFF785XZN.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF743BYL bigWig fold change over control ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287VUW, ENCFF777NWU, ENCFF857MFM 483607847 ENCODE Processing Pipeline 138af9fa7ec8d034cdc33fc1595e149c https://www.encodeproject.org/files/ENCFF743BYL/@@download/ENCFF743BYL.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF840MLF bigWig fold change over control ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287VUW, ENCFF520FBS, ENCFF777NWU, ENCFF857MFM 845958652 ENCODE Processing Pipeline 1d0e5671df89c3fa55e8bec00cd37607 https://www.encodeproject.org/files/ENCFF840MLF/@@download/ENCFF840MLF.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF522FHZ bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF520FBS, ENCFF777NWU, ENCFF857MFM 4642902 ENCODE Processing Pipeline c2402a078af0414d94baa01b939d7f92 https://www.encodeproject.org/files/ENCFF522FHZ/@@download/ENCFF522FHZ.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF236CJA bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287VUW, ENCFF777NWU, ENCFF857MFM 4583562 ENCODE Processing Pipeline c2cda7c714adaf8834a1d6d16ebdadfe https://www.encodeproject.org/files/ENCFF236CJA/@@download/ENCFF236CJA.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF601AAB bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287VUW, ENCFF520FBS, ENCFF777NWU, ENCFF857MFM 4959977 ENCODE Processing Pipeline 6b758a660831c126b2aac27448a99c69 https://www.encodeproject.org/files/ENCFF601AAB/@@download/ENCFF601AAB.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF660KIF bed narrowPeak conservative idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF236CJA, ENCFF419RSJ, ENCFF522FHZ, ENCFF601AAB 434451 ENCODE Processing Pipeline bed243d87ba67150f16849a35d7a9ba0 https://www.encodeproject.org/files/ENCFF660KIF/@@download/ENCFF660KIF.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF124QXF bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF601AAB 10927681 ENCODE Processing Pipeline 16d8f3c06062890802023862a49774a5 https://www.encodeproject.org/files/ENCFF124QXF/@@download/ENCFF124QXF.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF524RYC bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF522FHZ 11173047 ENCODE Processing Pipeline b54be79fe6060de3eea21e270795cf23 https://www.encodeproject.org/files/ENCFF524RYC/@@download/ENCFF524RYC.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF043YJK bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF236CJA 11149161 ENCODE Processing Pipeline d3c083341a2d851fc17718cda8739f3b https://www.encodeproject.org/files/ENCFF043YJK/@@download/ENCFF043YJK.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF555KLN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF660KIF 809367 ENCODE Processing Pipeline bf0249b6f79eef854f280db6f55c4308 https://www.encodeproject.org/files/ENCFF555KLN/@@download/ENCFF555KLN.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF897QCA bed narrowPeak optimal idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF236CJA, ENCFF419RSJ, ENCFF522FHZ, ENCFF601AAB 450126 ENCODE Processing Pipeline b6ef3e79437617b7fcc493bc78d9bb44 https://www.encodeproject.org/files/ENCFF897QCA/@@download/ENCFF897QCA.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF086FMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF897QCA 832797 ENCODE Processing Pipeline b548a595c06083c18a139780de45680c https://www.encodeproject.org/files/ENCFF086FMB/@@download/ENCFF086FMB.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF067TKW bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ, ENCFF954WQD 5067287 ENCODE Processing Pipeline 9a2a3da50df6a82344547bdd264fec2b https://www.encodeproject.org/files/ENCFF067TKW/@@download/ENCFF067TKW.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF644UFS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF219BHC 810325 ENCODE Processing Pipeline 95466b5e192b24d83985fd1fe9b0bbde https://www.encodeproject.org/files/ENCFF644UFS/@@download/ENCFF644UFS.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF049ZHZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF958VNQ 829406 ENCODE Processing Pipeline 407620dc340deab63aa908997edd5bc7 https://www.encodeproject.org/files/ENCFF049ZHZ/@@download/ENCFF049ZHZ.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF458OJS bigWig fold change over control ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ, ENCFF954WQD 856616051 ENCODE Processing Pipeline e741dbc3186b20cf8dc66f075cf36320 https://www.encodeproject.org/files/ENCFF458OJS/@@download/ENCFF458OJS.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF907WEZ bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ 4642195 ENCODE Processing Pipeline e100ed916c4dab0ebf0aee297c69717c https://www.encodeproject.org/files/ENCFF907WEZ/@@download/ENCFF907WEZ.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF305ZUW bigWig fold change over control ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF954WQD 488210769 ENCODE Processing Pipeline 7b04ce07683264cadd1ed133087b24f8 https://www.encodeproject.org/files/ENCFF305ZUW/@@download/ENCFF305ZUW.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF098VJC bigWig signal p-value ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ 531812197 ENCODE Processing Pipeline b5ef2a0bd8b17d2e3643361ad1cb8f73 https://www.encodeproject.org/files/ENCFF098VJC/@@download/ENCFF098VJC.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF425OPL bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF954WQD 4584722 ENCODE Processing Pipeline cdd2bae7c6ee87d711d7a5a52062b814 https://www.encodeproject.org/files/ENCFF425OPL/@@download/ENCFF425OPL.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF835OKY bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF907WEZ 11167171 ENCODE Processing Pipeline c40c7f3c7fcabfbe153973b223080ed9 https://www.encodeproject.org/files/ENCFF835OKY/@@download/ENCFF835OKY.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF932WCU bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425OPL 11139791 ENCODE Processing Pipeline a3e25681bb0c05e343587dbdd350c937 https://www.encodeproject.org/files/ENCFF932WCU/@@download/ENCFF932WCU.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF982UGK bigBed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF067TKW 11110136 ENCODE Processing Pipeline c2fce208ef06756fdbc0bd8885604816 https://www.encodeproject.org/files/ENCFF982UGK/@@download/ENCFF982UGK.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF219BHC bed narrowPeak conservative idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF067TKW, ENCFF425OPL, ENCFF907WEZ 436183 ENCODE Processing Pipeline 9c05e424157cd5ff3ec6669f3f0cfe22 https://www.encodeproject.org/files/ENCFF219BHC/@@download/ENCFF219BHC.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF958VNQ bed narrowPeak optimal idr thresholded peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF067TKW, ENCFF425OPL, ENCFF907WEZ 448758 ENCODE Processing Pipeline f59819bf62d5b8f038e3dcc9d07920fb https://www.encodeproject.org/files/ENCFF958VNQ/@@download/ENCFF958VNQ.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF278NSL bigWig fold change over control ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ 531853851 ENCODE Processing Pipeline 2f750288cbec43ea987175d9e1fdc2b0 https://www.encodeproject.org/files/ENCFF278NSL/@@download/ENCFF278NSL.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF477YPQ bigWig signal p-value ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF954WQD 527237009 ENCODE Processing Pipeline 899cf1f4860873c187b53da84ff20141 https://www.encodeproject.org/files/ENCFF477YPQ/@@download/ENCFF477YPQ.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF644DJC bigWig signal p-value ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ, ENCFF954WQD 841428595 ENCODE Processing Pipeline 44996d7b5e1b6844747cc6dfe69a47c8 https://www.encodeproject.org/files/ENCFF644DJC/@@download/ENCFF644DJC.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF574FTC fastq reads ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 1 100 paired-ended 2 ENCFF188VON 2196587357 Michael Snyder, Stanford 563060a1d0aa74d9fc77f7f6e85cbd9f SRA:SRR6213860 https://www.encodeproject.org/files/ENCFF574FTC/@@download/ENCFF574FTC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF744DBX fastq reads ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 1 100 paired-ended 1 ENCFF834VSH 2353738626 Michael Snyder, Stanford 63246010e207d18991f47ab1395bf163 SRA:SRR6213861 https://www.encodeproject.org/files/ENCFF744DBX/@@download/ENCFF744DBX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF188VON fastq reads ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 1 100 paired-ended 1 ENCFF574FTC 2167902015 Michael Snyder, Stanford 5b25fb5cccc2ecd259aa46a895dcb9cc SRA:SRR6213860 https://www.encodeproject.org/files/ENCFF188VON/@@download/ENCFF188VON.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF834VSH fastq reads ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 1 100 paired-ended 2 ENCFF744DBX 2397179949 Michael Snyder, Stanford aa21c21978bc9938e16e5ff0238d7bee SRA:SRR6213861 https://www.encodeproject.org/files/ENCFF834VSH/@@download/ENCFF834VSH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF323IVG bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 100 ENCFF643CGH, ENCFF744DBX, ENCFF834VSH 3575086421 ENCODE Processing Pipeline 4969325bca7a1fe86c0a08896c479f27 https://www.encodeproject.org/files/ENCFF323IVG/@@download/ENCFF323IVG.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF946YOG bam unfiltered alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 100 ENCFF643CGH, ENCFF744DBX, ENCFF834VSH 5123624879 ENCODE Processing Pipeline b31f5b09174d7dfa9b4d0fd4e8151a6e https://www.encodeproject.org/files/ENCFF946YOG/@@download/ENCFF946YOG.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF419APU bam unfiltered alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 100 ENCFF188VON, ENCFF574FTC, ENCFF643CGH 4798867519 ENCODE Processing Pipeline 20d073b3ee2c003b9a7ebbc0b6ad92e1 https://www.encodeproject.org/files/ENCFF419APU/@@download/ENCFF419APU.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF862XFS bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 100 ENCFF188VON, ENCFF574FTC, ENCFF643CGH 3759710354 ENCODE Processing Pipeline eef54ec03bd1a9e5469e1d43403e3106 https://www.encodeproject.org/files/ENCFF862XFS/@@download/ENCFF862XFS.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF604FNI bigWig signal p-value ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF323IVG, ENCFF910IKB 1136761399 ENCODE Processing Pipeline c66f6ed7aeca85564597cbf697955f0b https://www.encodeproject.org/files/ENCFF604FNI/@@download/ENCFF604FNI.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF902ZQO bigBed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF799KQV 11277758 ENCODE Processing Pipeline 790a77a8c74ce127b806b9ac70de857f https://www.encodeproject.org/files/ENCFF902ZQO/@@download/ENCFF902ZQO.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF110WHJ bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF227IZS, ENCFF862XFS 5663782 ENCODE Processing Pipeline fd128ffdaa7fd80c453ef7691c01b730 https://www.encodeproject.org/files/ENCFF110WHJ/@@download/ENCFF110WHJ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF315YWG bigWig signal p-value ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF227IZS, ENCFF862XFS 924969696 ENCODE Processing Pipeline 69b8a663488c62fd27e584d73d3b3fd7 https://www.encodeproject.org/files/ENCFF315YWG/@@download/ENCFF315YWG.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF408MFT bigWig signal p-value ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF227IZS, ENCFF323IVG, ENCFF862XFS, ENCFF910IKB 1798465346 ENCODE Processing Pipeline a244c5e6b3811dd8d3e7645867c51ab7 https://www.encodeproject.org/files/ENCFF408MFT/@@download/ENCFF408MFT.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF179QVT bigWig fold change over control ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF323IVG, ENCFF910IKB 1040193696 ENCODE Processing Pipeline 592d2f72f7f263bc7f6c989976e2f983 https://www.encodeproject.org/files/ENCFF179QVT/@@download/ENCFF179QVT.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF991KFU bigWig fold change over control ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF227IZS, ENCFF862XFS 1058159176 ENCODE Processing Pipeline 685f4b8e6a2685015c456d76eba5147d https://www.encodeproject.org/files/ENCFF991KFU/@@download/ENCFF991KFU.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF355YUJ bigWig fold change over control ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF227IZS, ENCFF323IVG, ENCFF862XFS, ENCFF910IKB 1987047310 ENCODE Processing Pipeline 8df2bc0faafcfaa5359ab5cfe4809851 https://www.encodeproject.org/files/ENCFF355YUJ/@@download/ENCFF355YUJ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF799KQV bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF323IVG, ENCFF910IKB 6007579 ENCODE Processing Pipeline 5eeb4d67c018aaa2ab36fe96ba89d924 https://www.encodeproject.org/files/ENCFF799KQV/@@download/ENCFF799KQV.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF806AJO bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF227IZS, ENCFF323IVG, ENCFF862XFS, ENCFF910IKB 6943476 ENCODE Processing Pipeline 0d638464f5d2e31134c3ec9dda315a17 https://www.encodeproject.org/files/ENCFF806AJO/@@download/ENCFF806AJO.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF270DBK bigBed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF110WHJ 11205196 ENCODE Processing Pipeline 4a2d850a5073420a83b9257545d63754 https://www.encodeproject.org/files/ENCFF270DBK/@@download/ENCFF270DBK.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF515SHI bigBed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF806AJO 11138114 ENCODE Processing Pipeline 1b54def9e2a53da811749144d7f61f23 https://www.encodeproject.org/files/ENCFF515SHI/@@download/ENCFF515SHI.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF205LME bed narrowPeak conservative idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF110WHJ, ENCFF419RSJ, ENCFF799KQV, ENCFF806AJO 21261 ENCODE Processing Pipeline 1d182280a8311f07ace6ee7ce48aa9e1 https://www.encodeproject.org/files/ENCFF205LME/@@download/ENCFF205LME.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF119PZO bigBed narrowPeak conservative idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF205LME 105297 ENCODE Processing Pipeline 42801f22f4aea2996348dc1143c67cc9 https://www.encodeproject.org/files/ENCFF119PZO/@@download/ENCFF119PZO.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF054DTJ bed narrowPeak optimal idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF110WHJ, ENCFF419RSJ, ENCFF799KQV, ENCFF806AJO 62610 ENCODE Processing Pipeline 11e37f4d08c13ba386427268a861516b https://www.encodeproject.org/files/ENCFF054DTJ/@@download/ENCFF054DTJ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF923TLC bigBed narrowPeak optimal idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF054DTJ 202657 ENCODE Processing Pipeline 7d8bd4a3ea7fce79b1c7a026d0a2669b https://www.encodeproject.org/files/ENCFF923TLC/@@download/ENCFF923TLC.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF847OPX bam unfiltered alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 100 ENCFF188VON, ENCFF574FTC, ENCFF807MUK 4794468025 ENCODE Processing Pipeline 790551110e01365f958ebfe9c1eee99e https://www.encodeproject.org/files/ENCFF847OPX/@@download/ENCFF847OPX.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF584LEL bam unfiltered alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 100 ENCFF744DBX, ENCFF807MUK, ENCFF834VSH 5120118114 ENCODE Processing Pipeline bfb1069c22600f314a01aa8e511ee4fd https://www.encodeproject.org/files/ENCFF584LEL/@@download/ENCFF584LEL.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF687OFO bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 100 ENCFF188VON, ENCFF574FTC, ENCFF807MUK 3757521635 ENCODE Processing Pipeline 9e0e08c32cf434ce838c37a56b8e85a5 https://www.encodeproject.org/files/ENCFF687OFO/@@download/ENCFF687OFO.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF623FBO bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 100 ENCFF744DBX, ENCFF807MUK, ENCFF834VSH 3572703204 ENCODE Processing Pipeline a2cb4567d6fa17f6324d2bbd918b3adb https://www.encodeproject.org/files/ENCFF623FBO/@@download/ENCFF623FBO.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF011JJQ bigWig signal p-value ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF051LWI, ENCFF687OFO 917337305 ENCODE Processing Pipeline 4e251d9244b0223ab0325fb873858776 https://www.encodeproject.org/files/ENCFF011JJQ/@@download/ENCFF011JJQ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF531RZX bigWig signal p-value ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF581ZJL, ENCFF623FBO 1092446759 ENCODE Processing Pipeline 481d62af0c43948faad6e0417f7854e5 https://www.encodeproject.org/files/ENCFF531RZX/@@download/ENCFF531RZX.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF535EEB bigWig signal p-value ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF623FBO, ENCFF687OFO 1743593927 ENCODE Processing Pipeline 1d0f0dcd8764a10f0492d5abc689038e https://www.encodeproject.org/files/ENCFF535EEB/@@download/ENCFF535EEB.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF860EQQ bigWig fold change over control ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF051LWI, ENCFF687OFO 1033071382 ENCODE Processing Pipeline bf9d39e5a79b023539bf93c619564869 https://www.encodeproject.org/files/ENCFF860EQQ/@@download/ENCFF860EQQ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF027UPQ bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF581ZJL, ENCFF623FBO 6005463 ENCODE Processing Pipeline 1353812070a8ae4076074665d90ec565 https://www.encodeproject.org/files/ENCFF027UPQ/@@download/ENCFF027UPQ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF662CIT bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF051LWI, ENCFF687OFO 5665796 ENCODE Processing Pipeline 734bfef27a0bf430b9620e9a05ddb2b0 https://www.encodeproject.org/files/ENCFF662CIT/@@download/ENCFF662CIT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF422KXR bigBed narrowPeak optimal idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF462CPT 198567 ENCODE Processing Pipeline 6f603dd66d7bb44f43116b727143ec29 https://www.encodeproject.org/files/ENCFF422KXR/@@download/ENCFF422KXR.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF202AHW bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF623FBO, ENCFF687OFO 6939829 ENCODE Processing Pipeline f60bc81957085889e127495f12db228a https://www.encodeproject.org/files/ENCFF202AHW/@@download/ENCFF202AHW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF401FXT bed narrowPeak conservative idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF027UPQ, ENCFF202AHW, ENCFF662CIT 20186 ENCODE Processing Pipeline 0970677dc42cc851e920616c085ce58c https://www.encodeproject.org/files/ENCFF401FXT/@@download/ENCFF401FXT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF136RAF bigWig fold change over control ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF623FBO, ENCFF687OFO 1968370152 ENCODE Processing Pipeline 17f82c2047c196d85ee9a527f513eee8 https://www.encodeproject.org/files/ENCFF136RAF/@@download/ENCFF136RAF.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF889PDU bigWig fold change over control ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF581ZJL, ENCFF623FBO 1051748465 ENCODE Processing Pipeline 785436ea715a669d08a8b2a729470a81 https://www.encodeproject.org/files/ENCFF889PDU/@@download/ENCFF889PDU.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF456IPI bigBed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF027UPQ 11264001 ENCODE Processing Pipeline c95f9267037db1b698342768b64f67b4 https://www.encodeproject.org/files/ENCFF456IPI/@@download/ENCFF456IPI.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF761TYD bigBed narrowPeak conservative idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF401FXT 101844 ENCODE Processing Pipeline bc708bb1dc5b58ad122b9fabaad17528 https://www.encodeproject.org/files/ENCFF761TYD/@@download/ENCFF761TYD.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF462CPT bed narrowPeak optimal idr thresholded peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF027UPQ, ENCFF202AHW, ENCFF662CIT 61355 ENCODE Processing Pipeline e5f4357bf52033266e56f7a93118ed40 https://www.encodeproject.org/files/ENCFF462CPT/@@download/ENCFF462CPT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF051TIP bigBed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF662CIT 11190470 ENCODE Processing Pipeline 20647a8291697063b8c83b6088f7bbcb https://www.encodeproject.org/files/ENCFF051TIP/@@download/ENCFF051TIP.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF058WOK bigBed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1, 2 ENCFF202AHW 11119822 ENCODE Processing Pipeline eb6e759d992395151267c06d0ec29c28 https://www.encodeproject.org/files/ENCFF058WOK/@@download/ENCFF058WOK.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF296OXR fastq reads ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF565IZM 2995154988 Michael Snyder, Stanford 264deb2d7722501c403922d3b7538db4 SRA:SRR6214322 https://www.encodeproject.org/files/ENCFF296OXR/@@download/ENCFF296OXR.fastq.gz Illumina HiSeq 4000 /files/ENCFF186FIL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565IZM fastq reads ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF296OXR 3532962114 Michael Snyder, Stanford b7b79d350aa4ba6fb68343af9e4a5730 SRA:SRR6214322 https://www.encodeproject.org/files/ENCFF565IZM/@@download/ENCFF565IZM.fastq.gz Illumina HiSeq 4000 /files/ENCFF176XPN/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF253SEL bam unfiltered alignments ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF296OXR, ENCFF565IZM, ENCFF807MUK 5660823057 ENCODE Processing Pipeline cd26323198695973efc99591b3b54778 https://www.encodeproject.org/files/ENCFF253SEL/@@download/ENCFF253SEL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF093JHV bam alignments ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF296OXR, ENCFF565IZM, ENCFF807MUK 3606771690 ENCODE Processing Pipeline 7fc2b1189155bc7dfa9f6528b6f49ddb https://www.encodeproject.org/files/ENCFF093JHV/@@download/ENCFF093JHV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF510UXR bam unfiltered alignments ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF296OXR, ENCFF565IZM, ENCFF643CGH 5661521182 ENCODE Processing Pipeline 1158d1dab7e150db4c5bb1e5e3c8129c https://www.encodeproject.org/files/ENCFF510UXR/@@download/ENCFF510UXR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF300VIN bam alignments ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF296OXR, ENCFF565IZM, ENCFF643CGH 3609890045 ENCODE Processing Pipeline 91bd6ba1038b9c44f04613f633f84958 https://www.encodeproject.org/files/ENCFF300VIN/@@download/ENCFF300VIN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF834WAQ bigWig signal p-value ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF093JHV, ENCFF734BLH 1073439314 ENCODE Processing Pipeline fac62c4d217048978745247b9327812b https://www.encodeproject.org/files/ENCFF834WAQ/@@download/ENCFF834WAQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF428MRB bigWig fold change over control ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF093JHV, ENCFF734BLH 1238500172 ENCODE Processing Pipeline 9dae07a9448e58f906dd4601bdacf3a5 https://www.encodeproject.org/files/ENCFF428MRB/@@download/ENCFF428MRB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF369LXG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF578ZTX 617338 ENCODE Processing Pipeline bf6a0e6e5a1ae18c432a3f674e9a31ff https://www.encodeproject.org/files/ENCFF369LXG/@@download/ENCFF369LXG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF576JQH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF369LXG 1108478 ENCODE Processing Pipeline 211d45e2c4cd3024613acfe51454a4e0 https://www.encodeproject.org/files/ENCFF576JQH/@@download/ENCFF576JQH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF578ZTX bed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF093JHV, ENCFF734BLH 6361168 ENCODE Processing Pipeline bb59892c0f059e6a8a4d0a88b0c5a8dd https://www.encodeproject.org/files/ENCFF578ZTX/@@download/ENCFF578ZTX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF649ZPE bigBed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF578ZTX 11572825 ENCODE Processing Pipeline 50f3f0f5189220efedc049520f427442 https://www.encodeproject.org/files/ENCFF649ZPE/@@download/ENCFF649ZPE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF924QSS bigWig signal p-value ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300VIN, ENCFF302FDA 1007103323 ENCODE Processing Pipeline 56161400eb9eb2ba92a9907b8d5ae184 https://www.encodeproject.org/files/ENCFF924QSS/@@download/ENCFF924QSS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF216RHI bigWig fold change over control ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300VIN, ENCFF302FDA 1223257355 ENCODE Processing Pipeline edbfb1e8e367f153644036e84fa3e206 https://www.encodeproject.org/files/ENCFF216RHI/@@download/ENCFF216RHI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF663YRF bed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300VIN, ENCFF302FDA 6371110 ENCODE Processing Pipeline 129f12f63d094f452718d7d72c9784e0 https://www.encodeproject.org/files/ENCFF663YRF/@@download/ENCFF663YRF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF898JJD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF663YRF 605071 ENCODE Processing Pipeline 36ff6092f366d7ddaf8b95da2a335701 https://www.encodeproject.org/files/ENCFF898JJD/@@download/ENCFF898JJD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF432KTN bigBed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF663YRF 11597338 ENCODE Processing Pipeline 3ca7e3057c8fa7116d504319ecd243a9 https://www.encodeproject.org/files/ENCFF432KTN/@@download/ENCFF432KTN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF164KWE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF898JJD 1095751 ENCODE Processing Pipeline b7d65d244ac96ab61c5ed0656cef01db https://www.encodeproject.org/files/ENCFF164KWE/@@download/ENCFF164KWE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF173LQG fastq reads ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 1 100 paired-ended 2 ENCFF611URC 3030764538 Michael Snyder, Stanford c2125e6ea891ac6d9647aa496261eaa5 https://www.encodeproject.org/files/ENCFF173LQG/@@download/ENCFF173LQG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption experiment not submitted to GEO ENCFF611URC fastq reads ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 1 100 paired-ended 1 ENCFF173LQG 2987295922 Michael Snyder, Stanford 1213fd94c3317d2cdd172d30f860813e https://www.encodeproject.org/files/ENCFF611URC/@@download/ENCFF611URC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption experiment not submitted to GEO ENCFF844OMR fastq reads ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 1 100 paired-ended 2 ENCFF698YEB 3142066977 Michael Snyder, Stanford afe31685d7de4e2e7ab14362dd8f684a https://www.encodeproject.org/files/ENCFF844OMR/@@download/ENCFF844OMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption experiment not submitted to GEO ENCFF698YEB fastq reads ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 1 100 paired-ended 1 ENCFF844OMR 3083078038 Michael Snyder, Stanford 6a655935f0dd4c4ceb87189e49f433ff https://www.encodeproject.org/files/ENCFF698YEB/@@download/ENCFF698YEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption experiment not submitted to GEO ENCFF386NMZ bam unfiltered alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 100 ENCFF173LQG, ENCFF611URC, ENCFF643CGH 6473970928 ENCODE Processing Pipeline 46d21b2184b466c5b6e7962f06fb588d https://www.encodeproject.org/files/ENCFF386NMZ/@@download/ENCFF386NMZ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF269FDU bam unfiltered alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 100 ENCFF643CGH, ENCFF698YEB, ENCFF844OMR 6669292116 ENCODE Processing Pipeline a70af1d70f37e8b22ee5891dc17f21c1 https://www.encodeproject.org/files/ENCFF269FDU/@@download/ENCFF269FDU.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF874LOC bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 100 ENCFF643CGH, ENCFF698YEB, ENCFF844OMR 5388558299 ENCODE Processing Pipeline feab8acaa4ad1d452d72e6ace43a07af https://www.encodeproject.org/files/ENCFF874LOC/@@download/ENCFF874LOC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF083HDY bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 100 ENCFF173LQG, ENCFF611URC, ENCFF643CGH 5058580757 ENCODE Processing Pipeline 53453ffa3be04872a205f468e2318140 https://www.encodeproject.org/files/ENCFF083HDY/@@download/ENCFF083HDY.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF619HZU bigWig signal p-value ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF083HDY, ENCFF227IZS 987636128 ENCODE Processing Pipeline d51156698cfb139f2e13494c4b0ee5ff https://www.encodeproject.org/files/ENCFF619HZU/@@download/ENCFF619HZU.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF129MQX bigWig fold change over control ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF874LOC, ENCFF910IKB 1292044893 ENCODE Processing Pipeline 234121b5b23252a06eff2723c314be53 https://www.encodeproject.org/files/ENCFF129MQX/@@download/ENCFF129MQX.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF682XPD bed narrowPeak optimal idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF467YDV, ENCFF674YQT, ENCFF874WUJ 368275 ENCODE Processing Pipeline b8af65ccc10365974dab1293c0c10101 https://www.encodeproject.org/files/ENCFF682XPD/@@download/ENCFF682XPD.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF467YDV bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF083HDY, ENCFF227IZS 6520297 ENCODE Processing Pipeline d05427011d096d59c9b4dfad6d3a2622 https://www.encodeproject.org/files/ENCFF467YDV/@@download/ENCFF467YDV.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF874WUJ bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF083HDY, ENCFF227IZS, ENCFF874LOC, ENCFF910IKB 7280797 ENCODE Processing Pipeline 65a04d7734976b485246fd22c3cd2cc8 https://www.encodeproject.org/files/ENCFF874WUJ/@@download/ENCFF874WUJ.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF378GZG bigBed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF874WUJ 13191093 ENCODE Processing Pipeline 08634fec629470d78146eb672055a467 https://www.encodeproject.org/files/ENCFF378GZG/@@download/ENCFF378GZG.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF650FUP bigBed narrowPeak optimal idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF682XPD 807183 ENCODE Processing Pipeline 83cf9ab8afc8ab94eea434ad824e5bad https://www.encodeproject.org/files/ENCFF650FUP/@@download/ENCFF650FUP.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF728OAR bigWig fold change over control ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF083HDY, ENCFF227IZS, ENCFF874LOC, ENCFF910IKB 2241528648 ENCODE Processing Pipeline 88a2f05ed7ec39c55690263ad9cbd5a1 https://www.encodeproject.org/files/ENCFF728OAR/@@download/ENCFF728OAR.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF674YQT bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF874LOC, ENCFF910IKB 7041507 ENCODE Processing Pipeline c5d3a5c655bb20d84d7b520ff8359add https://www.encodeproject.org/files/ENCFF674YQT/@@download/ENCFF674YQT.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF229QDQ bigBed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF674YQT 13153827 ENCODE Processing Pipeline f9d2064d7f3bd8081f1c386527b3e9eb https://www.encodeproject.org/files/ENCFF229QDQ/@@download/ENCFF229QDQ.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF419QKE bigBed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF467YDV 11270567 ENCODE Processing Pipeline ed74ec8754fa0fb96d1d7b4c9b378bea https://www.encodeproject.org/files/ENCFF419QKE/@@download/ENCFF419QKE.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF045KTH bed narrowPeak conservative idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF467YDV, ENCFF674YQT, ENCFF874WUJ 242027 ENCODE Processing Pipeline 02fed98807398672821f85a73bb984bc https://www.encodeproject.org/files/ENCFF045KTH/@@download/ENCFF045KTH.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF863OTX bigWig signal p-value ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF083HDY, ENCFF227IZS, ENCFF874LOC, ENCFF910IKB 2220263391 ENCODE Processing Pipeline 5175b270c48ca436479a2e04fb144cd6 https://www.encodeproject.org/files/ENCFF863OTX/@@download/ENCFF863OTX.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF146FHZ bigWig signal p-value ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF874LOC, ENCFF910IKB 1259941552 ENCODE Processing Pipeline c250eb5f8d4c871e6751f88d948c3458 https://www.encodeproject.org/files/ENCFF146FHZ/@@download/ENCFF146FHZ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF773VRL bigWig fold change over control ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF083HDY, ENCFF227IZS 1201194248 ENCODE Processing Pipeline c69b681c51ebbaeab9c91b87591f80e5 https://www.encodeproject.org/files/ENCFF773VRL/@@download/ENCFF773VRL.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF644FUU bigBed narrowPeak conservative idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF045KTH 487217 ENCODE Processing Pipeline 7d3de627f4f7d72214d591f7e692c19c https://www.encodeproject.org/files/ENCFF644FUU/@@download/ENCFF644FUU.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF810HJE bam unfiltered alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 100 ENCFF173LQG, ENCFF611URC, ENCFF807MUK 6468163347 ENCODE Processing Pipeline 259ed08b58ddf4b2c140aa99e5b39f29 https://www.encodeproject.org/files/ENCFF810HJE/@@download/ENCFF810HJE.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF018JRT bam unfiltered alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 100 ENCFF698YEB, ENCFF807MUK, ENCFF844OMR 6664192123 ENCODE Processing Pipeline 362bb364e7bfe3fe3b697c1cfdceca8d https://www.encodeproject.org/files/ENCFF018JRT/@@download/ENCFF018JRT.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF226XCD bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 100 ENCFF698YEB, ENCFF807MUK, ENCFF844OMR 5385572465 ENCODE Processing Pipeline 0f8c35045bb68a5b62a2b806ef6f1d94 https://www.encodeproject.org/files/ENCFF226XCD/@@download/ENCFF226XCD.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF895ARY bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 100 ENCFF173LQG, ENCFF611URC, ENCFF807MUK 5054665382 ENCODE Processing Pipeline 2d8f1474e333b63f1c0d341fa2c0cde5 https://www.encodeproject.org/files/ENCFF895ARY/@@download/ENCFF895ARY.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF477EQH bigWig signal p-value ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF226XCD, ENCFF581ZJL 1331996762 ENCODE Processing Pipeline 184703a0a177bdaa539e4f99352b48eb https://www.encodeproject.org/files/ENCFF477EQH/@@download/ENCFF477EQH.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF337HDN bigWig fold change over control ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF226XCD, ENCFF581ZJL 1286413881 ENCODE Processing Pipeline 2969e7dd3cfb6c2c7fcd987177ea0682 https://www.encodeproject.org/files/ENCFF337HDN/@@download/ENCFF337HDN.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF603GSB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF051LWI, ENCFF226XCD, ENCFF581ZJL, ENCFF895ARY 7279331 ENCODE Processing Pipeline 7f789687bba49fc4c8c383ac37f4a783 https://www.encodeproject.org/files/ENCFF603GSB/@@download/ENCFF603GSB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF356KWW bigBed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF148ZUB 13143132 ENCODE Processing Pipeline 3a0a26f728ad74b692a20469c6da442b https://www.encodeproject.org/files/ENCFF356KWW/@@download/ENCFF356KWW.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF146THB bigBed narrowPeak optimal idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF806BDC 794072 ENCODE Processing Pipeline ec6d68250c6de3adb6d718aa7d4e5b05 https://www.encodeproject.org/files/ENCFF146THB/@@download/ENCFF146THB.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF148ZUB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF226XCD, ENCFF581ZJL 7040840 ENCODE Processing Pipeline a472f2327980a114d69596d0764f8fb2 https://www.encodeproject.org/files/ENCFF148ZUB/@@download/ENCFF148ZUB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF806BDC bed narrowPeak optimal idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF148ZUB, ENCFF315NKB, ENCFF603GSB 363033 ENCODE Processing Pipeline 4c0a8985ef6a22eda28694f0e09b57f6 https://www.encodeproject.org/files/ENCFF806BDC/@@download/ENCFF806BDC.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF063XID bigWig signal p-value ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF051LWI, ENCFF895ARY 1243309045 ENCODE Processing Pipeline 046607e2aa18e42d29ee5b2aa182bd58 https://www.encodeproject.org/files/ENCFF063XID/@@download/ENCFF063XID.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF491IZP bigWig signal p-value ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF051LWI, ENCFF226XCD, ENCFF581ZJL, ENCFF895ARY 2120345363 ENCODE Processing Pipeline 8fc7352c5526fe69c57934da6adcc194 https://www.encodeproject.org/files/ENCFF491IZP/@@download/ENCFF491IZP.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF034RJC bigWig fold change over control ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF051LWI, ENCFF895ARY 1196705016 ENCODE Processing Pipeline 965483aabb99d739ff2fcf59db2c82cf https://www.encodeproject.org/files/ENCFF034RJC/@@download/ENCFF034RJC.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF982RMW bigWig fold change over control ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF051LWI, ENCFF226XCD, ENCFF581ZJL, ENCFF895ARY 2241442715 ENCODE Processing Pipeline ea8014f9b75f3b40eeba132781518b7f https://www.encodeproject.org/files/ENCFF982RMW/@@download/ENCFF982RMW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF315NKB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF051LWI, ENCFF895ARY 6499963 ENCODE Processing Pipeline a110ec62c08db14cd9252d40779c1ef5 https://www.encodeproject.org/files/ENCFF315NKB/@@download/ENCFF315NKB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF132DPJ bigBed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF315NKB 11266502 ENCODE Processing Pipeline 2e5710a8a7c5a9e7edcc64bb21079d98 https://www.encodeproject.org/files/ENCFF132DPJ/@@download/ENCFF132DPJ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF665VQR bigBed narrowPeak conservative idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF093GSD 483232 ENCODE Processing Pipeline 379461928a80a5e8a35a93ea7c2fe457 https://www.encodeproject.org/files/ENCFF665VQR/@@download/ENCFF665VQR.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF496ATY bigBed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF603GSB 13180896 ENCODE Processing Pipeline cd4b41c735c793fbe0ed06720b4fe368 https://www.encodeproject.org/files/ENCFF496ATY/@@download/ENCFF496ATY.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF093GSD bed narrowPeak conservative idr thresholded peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF148ZUB, ENCFF315NKB, ENCFF603GSB 240807 ENCODE Processing Pipeline fed0a7de3fc464aaf1491991047d37a8 https://www.encodeproject.org/files/ENCFF093GSD/@@download/ENCFF093GSD.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000OKX bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OLJ 1391721097 Richard Myers, HAIB 230e44c3a39f2fc697998443f4c6e145 https://www.encodeproject.org/files/ENCFF000OKX/@@download/ENCFF000OKX.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OKY bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OLH 941798604 Richard Myers, HAIB 6ffde8308564c32f2c32495e8cf46e6e https://www.encodeproject.org/files/ENCFF000OKY/@@download/ENCFF000OKY.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OKZ bigBed broadPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAM 1154293 Richard Myers, HAIB 6f80f62ccea05e9dd7dbe7fff6af80f5 https://www.encodeproject.org/files/ENCFF000OKZ/@@download/ENCFF000OKZ.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OLA bigBed broadPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAN 781022 Richard Myers, HAIB 88828b215b46d40c25620432f42d3e18 https://www.encodeproject.org/files/ENCFF000OLA/@@download/ENCFF000OLA.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OLC bigWig raw signal ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 70122345 Richard Myers, HAIB f6ab92515fc05d38e9c16d602763f855 https://www.encodeproject.org/files/ENCFF000OLC/@@download/ENCFF000OLC.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OLE bigWig raw signal ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 31744042 Richard Myers, HAIB de78ab15183dc41424a94fa2e2e0a002 https://www.encodeproject.org/files/ENCFF000OLE/@@download/ENCFF000OLE.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OLH fastq reads ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 963407517 Richard Myers, HAIB 497af607a2b91cbae61bb4be0658ea20 https://www.encodeproject.org/files/ENCFF000OLH/@@download/ENCFF000OLH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLW/ released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OLJ fastq reads ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1415743113 Richard Myers, HAIB 7f5a20a08b6ae46a0bfedf3c9654d843 https://www.encodeproject.org/files/ENCFF000OLJ/@@download/ENCFF000OLJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLW/ released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF001UAM bed broadPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 602660 Richard Myers, HAIB 880bbd2bf1f7cefd37379261925223b8 https://www.encodeproject.org/files/ENCFF001UAM/@@download/ENCFF001UAM.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001UAN bed broadPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 466059 Richard Myers, HAIB f4febae7bf9244ac9dd89d4a30376249 https://www.encodeproject.org/files/ENCFF001UAN/@@download/ENCFF001UAN.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CIO bed narrowPeak optimal idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 421529 ENCODE Consortium Analysis Working Group 42e49e00119db46ac1a214d2e64d3ac2 https://www.encodeproject.org/files/ENCFF002CIO/@@download/ENCFF002CIO.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF008ENS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIO 1229794 ENCODE Consortium a9fdcca87d1e88c3201d258157c97ec9 https://www.encodeproject.org/files/ENCFF008ENS/@@download/ENCFF008ENS.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF576UCN bam unfiltered alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLH, ENCFF643CGH 1237769129 ENCODE Processing Pipeline b5f615aad831df59ec7b7518cd4209a2 https://www.encodeproject.org/files/ENCFF576UCN/@@download/ENCFF576UCN.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF853DFV bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLH, ENCFF643CGH 749750229 ENCODE Processing Pipeline 01dca1d3313e723a40e49795433caf9d https://www.encodeproject.org/files/ENCFF853DFV/@@download/ENCFF853DFV.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF932ZNE bam unfiltered alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLJ, ENCFF643CGH 1761855457 ENCODE Processing Pipeline 207e3ca8fe00616d6c97e4856d1ed136 https://www.encodeproject.org/files/ENCFF932ZNE/@@download/ENCFF932ZNE.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF503BXT bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLJ, ENCFF643CGH 1090532025 ENCODE Processing Pipeline 5bd706dad3129daea2e3ed94346e9764 https://www.encodeproject.org/files/ENCFF503BXT/@@download/ENCFF503BXT.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF941REB bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLH, ENCFF807MUK 745183936 ENCODE Processing Pipeline 2a07f5e8b903eb47330d49050c4dc338 https://www.encodeproject.org/files/ENCFF941REB/@@download/ENCFF941REB.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF566PPH bam unfiltered alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLH, ENCFF807MUK 1235047030 ENCODE Processing Pipeline bda4f7a354478a1112c4c388ea905ff6 https://www.encodeproject.org/files/ENCFF566PPH/@@download/ENCFF566PPH.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF034UJE bam unfiltered alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLJ, ENCFF807MUK 1759309704 ENCODE Processing Pipeline b063643660132af7f0c94430699e0253 https://www.encodeproject.org/files/ENCFF034UJE/@@download/ENCFF034UJE.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF406DOL bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLJ, ENCFF807MUK 1086570684 ENCODE Processing Pipeline e1691b420679aff919a0f1e4b06a669a https://www.encodeproject.org/files/ENCFF406DOL/@@download/ENCFF406DOL.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF280DWC bigWig signal p-value ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF503BXT 318102019 ENCODE Processing Pipeline 1bcd1adfdb76188484397b78442e4e8c https://www.encodeproject.org/files/ENCFF280DWC/@@download/ENCFF280DWC.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF467XTD bigWig signal p-value ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF853DFV 310882169 ENCODE Processing Pipeline 8eb0cdabc4bd1007f065178ecc3794b8 https://www.encodeproject.org/files/ENCFF467XTD/@@download/ENCFF467XTD.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF219GMG bigWig signal p-value ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF503BXT, ENCFF853DFV 290174926 ENCODE Processing Pipeline c76c650ca1f85630acaef84d92f78a92 https://www.encodeproject.org/files/ENCFF219GMG/@@download/ENCFF219GMG.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF268RFF bigWig fold change over control ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF503BXT 362779040 ENCODE Processing Pipeline 25867855e5675cad59adc54dbe9f75de https://www.encodeproject.org/files/ENCFF268RFF/@@download/ENCFF268RFF.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF977DWH bigWig fold change over control ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF853DFV 259859836 ENCODE Processing Pipeline eeeb7143d56b9d0efb136b783ddbaebd https://www.encodeproject.org/files/ENCFF977DWH/@@download/ENCFF977DWH.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF901QEL bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF503BXT 6669092 ENCODE Processing Pipeline d72d52b968fa087ba981b54923246562 https://www.encodeproject.org/files/ENCFF901QEL/@@download/ENCFF901QEL.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF069VVC bigWig fold change over control ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF503BXT, ENCFF853DFV 539811645 ENCODE Processing Pipeline 4c7aafde81e1ac1cc2078959a4788bdf https://www.encodeproject.org/files/ENCFF069VVC/@@download/ENCFF069VVC.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF254MFX bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF853DFV 5955756 ENCODE Processing Pipeline 91c025f018737629c49d416301f18787 https://www.encodeproject.org/files/ENCFF254MFX/@@download/ENCFF254MFX.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF340YXX bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF503BXT, ENCFF853DFV 6932222 ENCODE Processing Pipeline 689ee27140355286870d5912c4737458 https://www.encodeproject.org/files/ENCFF340YXX/@@download/ENCFF340YXX.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF100ISH bigBed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF901QEL 12332652 ENCODE Processing Pipeline 96595a602b7b8bc331c702732400d3a1 https://www.encodeproject.org/files/ENCFF100ISH/@@download/ENCFF100ISH.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF383OYM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF403ZEO 1248835 ENCODE Processing Pipeline 92b8ab15afd8f37454f79c99db2d60eb https://www.encodeproject.org/files/ENCFF383OYM/@@download/ENCFF383OYM.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF640KXY bigBed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF254MFX 12260730 ENCODE Processing Pipeline 020ab5005554dbe557ad65554f23117d https://www.encodeproject.org/files/ENCFF640KXY/@@download/ENCFF640KXY.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF442EPX bigBed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340YXX 12284788 ENCODE Processing Pipeline a0ed9f9804a40973a13111924c9090ba https://www.encodeproject.org/files/ENCFF442EPX/@@download/ENCFF442EPX.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF554HGM bed narrowPeak conservative idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF254MFX, ENCFF340YXX, ENCFF419RSJ, ENCFF901QEL 497333 ENCODE Processing Pipeline aa89f65eccc5273fb9cb26701c232a11 https://www.encodeproject.org/files/ENCFF554HGM/@@download/ENCFF554HGM.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF403ZEO bed narrowPeak optimal idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF254MFX, ENCFF340YXX, ENCFF419RSJ, ENCFF901QEL 578005 ENCODE Processing Pipeline 26e8ac5c53c62287919176859e84d43d https://www.encodeproject.org/files/ENCFF403ZEO/@@download/ENCFF403ZEO.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF219YBB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF554HGM 1107973 ENCODE Processing Pipeline 796247b6f4ab11d4cee17dba12a8b1f5 https://www.encodeproject.org/files/ENCFF219YBB/@@download/ENCFF219YBB.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF802DSS bigWig fold change over control ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406DOL, ENCFF671VNQ 358893863 ENCODE Processing Pipeline fa4373fcf793535fd7a11b1f8267eca5 https://www.encodeproject.org/files/ENCFF802DSS/@@download/ENCFF802DSS.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF239SHH bigBed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF979MCB 12282436 ENCODE Processing Pipeline 11b438aaa39489475615bcab308e4309 https://www.encodeproject.org/files/ENCFF239SHH/@@download/ENCFF239SHH.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF350CMV bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406DOL, ENCFF671VNQ 6563796 ENCODE Processing Pipeline 1ddbcddfca57eb9a3c8fa8987af232af https://www.encodeproject.org/files/ENCFF350CMV/@@download/ENCFF350CMV.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF594OKT bed narrowPeak conservative idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF158PRB, ENCFF350CMV, ENCFF979MCB 480680 ENCODE Processing Pipeline 9780db50257592cc88e492a6b6394745 https://www.encodeproject.org/files/ENCFF594OKT/@@download/ENCFF594OKT.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF459JAG bigWig signal p-value ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406DOL, ENCFF671VNQ 317396387 ENCODE Processing Pipeline c82b6fd30c5abf069aea51c85dd92d5a https://www.encodeproject.org/files/ENCFF459JAG/@@download/ENCFF459JAG.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF437NLV bigWig signal p-value ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671VNQ, ENCFF941REB 310529328 ENCODE Processing Pipeline 93fa963bb8d0148d8adb7c42dbb17dda https://www.encodeproject.org/files/ENCFF437NLV/@@download/ENCFF437NLV.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF448VSO bigWig fold change over control ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671VNQ, ENCFF941REB 256150754 ENCODE Processing Pipeline 6ec6c9b9b77ffe2960966550419ac4e9 https://www.encodeproject.org/files/ENCFF448VSO/@@download/ENCFF448VSO.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF785GUZ bigWig fold change over control ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406DOL, ENCFF671VNQ, ENCFF941REB 534972366 ENCODE Processing Pipeline d4ac18e2e739b63c0c7f4537a2d8b119 https://www.encodeproject.org/files/ENCFF785GUZ/@@download/ENCFF785GUZ.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF861UVO bigBed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF350CMV 12227031 ENCODE Processing Pipeline c83f32dfc6b0cbd97e4ded858b1ea2b7 https://www.encodeproject.org/files/ENCFF861UVO/@@download/ENCFF861UVO.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF739IRS bigWig signal p-value ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406DOL, ENCFF671VNQ, ENCFF941REB 289645899 ENCODE Processing Pipeline 970c11939f7d7b1e2dac5cb31db33c6c https://www.encodeproject.org/files/ENCFF739IRS/@@download/ENCFF739IRS.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF979MCB bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671VNQ, ENCFF941REB 5970345 ENCODE Processing Pipeline c5459bed20b5594654bb2f3f4ead91f3 https://www.encodeproject.org/files/ENCFF979MCB/@@download/ENCFF979MCB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF158PRB bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406DOL, ENCFF671VNQ, ENCFF941REB 6888847 ENCODE Processing Pipeline 364293692c6065a4d2e4297a0d7aed06 https://www.encodeproject.org/files/ENCFF158PRB/@@download/ENCFF158PRB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF445CPJ bigBed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF158PRB 12221637 ENCODE Processing Pipeline 768fc25c4fbe76c7b0cbdd698259c809 https://www.encodeproject.org/files/ENCFF445CPJ/@@download/ENCFF445CPJ.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF223TWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF594OKT 1084867 ENCODE Processing Pipeline 85ec4200712ceb58f174db4bb4e1dad6 https://www.encodeproject.org/files/ENCFF223TWV/@@download/ENCFF223TWV.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF459QKR bed narrowPeak optimal idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF158PRB, ENCFF350CMV, ENCFF979MCB 545091 ENCODE Processing Pipeline 20a2ddee4b5f6c9a2313f2b6af90d5a8 https://www.encodeproject.org/files/ENCFF459QKR/@@download/ENCFF459QKR.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF668WYN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF459QKR 1202344 ENCODE Processing Pipeline a9683b30cdc63ef48a2a149eeeec6792 https://www.encodeproject.org/files/ENCFF668WYN/@@download/ENCFF668WYN.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF945VNK fastq reads ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1257808590 Richard Myers, HAIB 3c8ad1d2706c19b50223a1ebef31ef63 SRA:SRR5339206 https://www.encodeproject.org/files/ENCFF945VNK/@@download/ENCFF945VNK.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample ENCFF765EAP fastq reads ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1659084102 Richard Myers, HAIB 727accc2e32046ab623e144e79b6ca4c SRA:SRR5339205 https://www.encodeproject.org/files/ENCFF765EAP/@@download/ENCFF765EAP.fastq.gz Illumina HiSeq 2000 /files/ENCFF977SGP/ released antibody characterized with exemption biological replicates with identical biosample ENCFF515FHW bam unfiltered alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF945VNK 1424257965 ENCODE Processing Pipeline 83eda64d935bda014796cb295ee30a58 https://www.encodeproject.org/files/ENCFF515FHW/@@download/ENCFF515FHW.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF956ULJ bam unfiltered alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF765EAP 1844807124 ENCODE Processing Pipeline 6abc13fa4092e102490689c62c43acc2 https://www.encodeproject.org/files/ENCFF956ULJ/@@download/ENCFF956ULJ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF044HXX bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF945VNK 1067040430 ENCODE Processing Pipeline 5f05145b2e1f479322b62a7334827ed8 https://www.encodeproject.org/files/ENCFF044HXX/@@download/ENCFF044HXX.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF395OWK bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF765EAP 1408728463 ENCODE Processing Pipeline a5a2992328cdd49caf746a188931f64c https://www.encodeproject.org/files/ENCFF395OWK/@@download/ENCFF395OWK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF735NGK bigWig signal p-value ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF395OWK, ENCFF610PNU 915470522 ENCODE Processing Pipeline 618a08eec0d4f746fc4305a40387fb3c https://www.encodeproject.org/files/ENCFF735NGK/@@download/ENCFF735NGK.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF036JKL bigWig signal p-value ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF044HXX, ENCFF200YPH, ENCFF395OWK, ENCFF610PNU 1035417766 ENCODE Processing Pipeline 748d1fede1b4c5cdd3348a944e64d8ad https://www.encodeproject.org/files/ENCFF036JKL/@@download/ENCFF036JKL.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF180STN bigWig fold change over control ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF044HXX, ENCFF200YPH, ENCFF395OWK, ENCFF610PNU 1292432285 ENCODE Processing Pipeline 5c6c1caec8ceb40d5ca8a38e23bd4d2a https://www.encodeproject.org/files/ENCFF180STN/@@download/ENCFF180STN.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF326NFN bigWig fold change over control ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF395OWK, ENCFF610PNU 892048599 ENCODE Processing Pipeline c97d819feb4f7af77c28df4dd44771d2 https://www.encodeproject.org/files/ENCFF326NFN/@@download/ENCFF326NFN.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF897JMT bigWig signal p-value ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF044HXX, ENCFF610PNU 581091788 ENCODE Processing Pipeline e32ecc2f93c8ffc2e1fe4be80d746c10 https://www.encodeproject.org/files/ENCFF897JMT/@@download/ENCFF897JMT.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF257XHW bigWig fold change over control ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF044HXX, ENCFF610PNU 508200845 ENCODE Processing Pipeline 7de78e4de9f1e5002b2ff15f5191f1a1 https://www.encodeproject.org/files/ENCFF257XHW/@@download/ENCFF257XHW.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF867EUD bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF200YPH, ENCFF395OWK, ENCFF610PNU 5803308 ENCODE Processing Pipeline 30f21c293a9a8c2c34b34dd7ab8d3904 https://www.encodeproject.org/files/ENCFF867EUD/@@download/ENCFF867EUD.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF437YNA bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF044HXX, ENCFF200YPH, ENCFF395OWK, ENCFF610PNU 6630987 ENCODE Processing Pipeline 11df97963f5e07d1017a2a51d3f05911 https://www.encodeproject.org/files/ENCFF437YNA/@@download/ENCFF437YNA.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF412OVP bigBed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF459FMQ 11306650 ENCODE Processing Pipeline 4810f0e803cc1fac960cbd91a0519a9b https://www.encodeproject.org/files/ENCFF412OVP/@@download/ENCFF412OVP.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF365HNK bigBed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF867EUD 11452184 ENCODE Processing Pipeline c724865531ebf2bc499ccb1dbb73599b https://www.encodeproject.org/files/ENCFF365HNK/@@download/ENCFF365HNK.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF741PQE bed narrowPeak conservative idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF437YNA, ENCFF459FMQ, ENCFF867EUD 272234 ENCODE Processing Pipeline a2d1a7eae5af022297c6cc2aad79e718 https://www.encodeproject.org/files/ENCFF741PQE/@@download/ENCFF741PQE.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF459FMQ bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF044HXX, ENCFF610PNU 5140513 ENCODE Processing Pipeline a52411af0307ccc27a6dcff39978455a https://www.encodeproject.org/files/ENCFF459FMQ/@@download/ENCFF459FMQ.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF130WVF bigBed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF437YNA 11564042 ENCODE Processing Pipeline b0bb26481831b581adffd96de3646ac0 https://www.encodeproject.org/files/ENCFF130WVF/@@download/ENCFF130WVF.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF543OML bigBed narrowPeak conservative idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF741PQE 512475 ENCODE Processing Pipeline 5733ea7462afa66ad733e082933a0c20 https://www.encodeproject.org/files/ENCFF543OML/@@download/ENCFF543OML.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF324QGE bed narrowPeak optimal idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF437YNA, ENCFF459FMQ, ENCFF867EUD 298604 ENCODE Processing Pipeline 4b2e12fbab0a9c49f8cbd58c03a1ec7a https://www.encodeproject.org/files/ENCFF324QGE/@@download/ENCFF324QGE.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF259AGF bigBed narrowPeak optimal idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF324QGE 550771 ENCODE Processing Pipeline 2985cce033aa78f1a757c603c0a6f61f https://www.encodeproject.org/files/ENCFF259AGF/@@download/ENCFF259AGF.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF832LOD bam unfiltered alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF945VNK 1416943296 ENCODE Processing Pipeline 45a3da176d138bed96a90f895653563b https://www.encodeproject.org/files/ENCFF832LOD/@@download/ENCFF832LOD.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF895FUF bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF945VNK 1066881075 ENCODE Processing Pipeline 8f5ab628afa3820e36b55776ec3ed063 https://www.encodeproject.org/files/ENCFF895FUF/@@download/ENCFF895FUF.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF153DJX bam unfiltered alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF765EAP, ENCFF807MUK 1833763570 ENCODE Processing Pipeline fee0f341f9f16f7410ba16c5fecfe9e1 https://www.encodeproject.org/files/ENCFF153DJX/@@download/ENCFF153DJX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF430SMC bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF765EAP, ENCFF807MUK 1408379496 ENCODE Processing Pipeline 2f4cf0cf5bb6a1b6c333948e8edc3b5f https://www.encodeproject.org/files/ENCFF430SMC/@@download/ENCFF430SMC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF719NGP bigWig signal p-value ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC 858362811 ENCODE Processing Pipeline 4f94e73d7d68174c0cb1ba9569e5f0cb https://www.encodeproject.org/files/ENCFF719NGP/@@download/ENCFF719NGP.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF058DKS bigWig signal p-value ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC, ENCFF895FUF 1407931314 ENCODE Processing Pipeline e83b7029262eabb00c7d34f9191c947e https://www.encodeproject.org/files/ENCFF058DKS/@@download/ENCFF058DKS.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF652XEH bigWig fold change over control ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC 891860032 ENCODE Processing Pipeline d43a5749be34f647dd343239d92054dc https://www.encodeproject.org/files/ENCFF652XEH/@@download/ENCFF652XEH.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF915UXV bigWig signal p-value ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF895FUF 703907090 ENCODE Processing Pipeline 20a5cb7651fbc7a2962f987a9bc9f1ec https://www.encodeproject.org/files/ENCFF915UXV/@@download/ENCFF915UXV.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF850YOC bigBed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF841RCY 11405587 ENCODE Processing Pipeline fde8ff85b94d03ed459dc65471ec7593 https://www.encodeproject.org/files/ENCFF850YOC/@@download/ENCFF850YOC.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF370EEL bigBed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF712EUK 13721144 ENCODE Processing Pipeline 0056ba836755161480d21097efece869 https://www.encodeproject.org/files/ENCFF370EEL/@@download/ENCFF370EEL.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF841RCY bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC 5847826 ENCODE Processing Pipeline d07b88783c8b876b0981da2fa3a322b2 https://www.encodeproject.org/files/ENCFF841RCY/@@download/ENCFF841RCY.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF401XAV bigBed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF924RTU 11279303 ENCODE Processing Pipeline e73765af6265815491594125e819c710 https://www.encodeproject.org/files/ENCFF401XAV/@@download/ENCFF401XAV.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF207YNL bed narrowPeak optimal idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF712EUK, ENCFF841RCY, ENCFF924RTU 295835 ENCODE Processing Pipeline d9ed0e1afecb61a6948b1a641fbfa1b9 https://www.encodeproject.org/files/ENCFF207YNL/@@download/ENCFF207YNL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF712EUK bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC, ENCFF895FUF 6632917 ENCODE Processing Pipeline 349c881b669498a43cf50268f0826ffc https://www.encodeproject.org/files/ENCFF712EUK/@@download/ENCFF712EUK.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF419KAD bigBed narrowPeak optimal idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF207YNL 544333 ENCODE Processing Pipeline 50fd6b9ea522471c2d4e3d808bc7dcd1 https://www.encodeproject.org/files/ENCFF419KAD/@@download/ENCFF419KAD.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF924RTU bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF895FUF 5165733 ENCODE Processing Pipeline cc7d2a5f310991fd7605497aa85aba1e https://www.encodeproject.org/files/ENCFF924RTU/@@download/ENCFF924RTU.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF369SSM bigWig fold change over control ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF895FUF 519768985 ENCODE Processing Pipeline 7f0c7ab35d1e5bb8d8e143b94e487b08 https://www.encodeproject.org/files/ENCFF369SSM/@@download/ENCFF369SSM.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF319QZR bigWig fold change over control ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC, ENCFF895FUF 1286471139 ENCODE Processing Pipeline 15725af7631b9d2655f2b486dcec308c https://www.encodeproject.org/files/ENCFF319QZR/@@download/ENCFF319QZR.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF832YJX bed narrowPeak conservative idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF712EUK, ENCFF841RCY, ENCFF924RTU 271716 ENCODE Processing Pipeline cffa3d2d3bfc24ce1a10f17fae3f2cd5 https://www.encodeproject.org/files/ENCFF832YJX/@@download/ENCFF832YJX.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF942LCT bigBed narrowPeak conservative idr thresholded peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF832YJX 510280 ENCODE Processing Pipeline 3a5e7036bba15355f417d45036fe28d7 https://www.encodeproject.org/files/ENCFF942LCT/@@download/ENCFF942LCT.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF614QMU bam unfiltered alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 50 ENCFF145XWH, ENCFF807MUK 1202461527 ENCODE Processing Pipeline 9c4c5a56287dba4abfba079de593f12a https://www.encodeproject.org/files/ENCFF614QMU/@@download/ENCFF614QMU.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF433QAO bam unfiltered alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 50 ENCFF807MUK, ENCFF976LPV 2137233063 ENCODE Processing Pipeline 1cced6a8e6b12b936f359941403bd23a https://www.encodeproject.org/files/ENCFF433QAO/@@download/ENCFF433QAO.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF976LPV fastq reads ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 1 50 single-ended 1991175803 Richard Myers, HAIB ff58a3ef3fbd01bf5ca5d55027036db5 SRA:SRR5339190 https://www.encodeproject.org/files/ENCFF976LPV/@@download/ENCFF976LPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF993VKM/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF145XWH fastq reads ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 1 50 single-ended 1133790547 Richard Myers, HAIB 6e65e582ef48c41ea94fdca22364fee7 SRA:SRR5339191 https://www.encodeproject.org/files/ENCFF145XWH/@@download/ENCFF145XWH.fastq.gz Illumina HiSeq 2000 /files/ENCFF913JVQ/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF688UQF bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 50 ENCFF145XWH, ENCFF807MUK 870950465 ENCODE Processing Pipeline 5d5bfe40daf05eaf1150cd1e03e6db20 https://www.encodeproject.org/files/ENCFF688UQF/@@download/ENCFF688UQF.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF361KFD bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 50 ENCFF807MUK, ENCFF976LPV 1553484646 ENCODE Processing Pipeline 9730f0150ab658d9495a8477c5e3e907 https://www.encodeproject.org/files/ENCFF361KFD/@@download/ENCFF361KFD.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF142EXA bigWig fold change over control ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF361KFD, ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 1237920560 ENCODE Processing Pipeline 6b5141d7be097fcafe97861b7cbbd912 https://www.encodeproject.org/files/ENCFF142EXA/@@download/ENCFF142EXA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF106WRW bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 6366354 ENCODE Processing Pipeline 87292ab1949c87c6aaaff0e84e4cf796 https://www.encodeproject.org/files/ENCFF106WRW/@@download/ENCFF106WRW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF134OVY bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF361KFD, ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 7106902 ENCODE Processing Pipeline 82477c0d9e81006cd37be7bcac866750 https://www.encodeproject.org/files/ENCFF134OVY/@@download/ENCFF134OVY.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF260TNQ bigBed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF604XWK 13327494 ENCODE Processing Pipeline 7e1f288850acef71ad725b81a94cf0e7 https://www.encodeproject.org/files/ENCFF260TNQ/@@download/ENCFF260TNQ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF723HLA bigBed narrowPeak optimal idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF712AXK 852224 ENCODE Processing Pipeline b4e0f71242a503b01ec23125bd06e2d9 https://www.encodeproject.org/files/ENCFF723HLA/@@download/ENCFF723HLA.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF625WOU bigWig signal p-value ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 897184444 ENCODE Processing Pipeline 0dbb780638c27528c2d3fd3038f0ee5c https://www.encodeproject.org/files/ENCFF625WOU/@@download/ENCFF625WOU.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF771LDJ bigWig signal p-value ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF361KFD, ENCFF444TNY, ENCFF847YDJ 1083279801 ENCODE Processing Pipeline 6f8019099fed8b4e893453ac47d71e3a https://www.encodeproject.org/files/ENCFF771LDJ/@@download/ENCFF771LDJ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF858HYY bigBed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF134OVY 13341332 ENCODE Processing Pipeline 2435bc697ab619a1807eec5d78072b83 https://www.encodeproject.org/files/ENCFF858HYY/@@download/ENCFF858HYY.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF510ZUJ bed narrowPeak conservative idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF001TDO, ENCFF106WRW, ENCFF134OVY, ENCFF604XWK 290077 ENCODE Processing Pipeline 854bcc3923d7bcf9c470288133d1a39a https://www.encodeproject.org/files/ENCFF510ZUJ/@@download/ENCFF510ZUJ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF777AHA bigWig fold change over control ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 655277915 ENCODE Processing Pipeline f4aea5eb3007b1a9ef063ddd7e09b54b https://www.encodeproject.org/files/ENCFF777AHA/@@download/ENCFF777AHA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF426QHL bigWig fold change over control ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF361KFD, ENCFF444TNY, ENCFF847YDJ 971095580 ENCODE Processing Pipeline f4aeee2573c3ac9024a049c2be05ec22 https://www.encodeproject.org/files/ENCFF426QHL/@@download/ENCFF426QHL.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF604XWK bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF361KFD, ENCFF444TNY, ENCFF847YDJ 6853798 ENCODE Processing Pipeline 0ce20453e7cc72bebc28e6ce7dddc3cf https://www.encodeproject.org/files/ENCFF604XWK/@@download/ENCFF604XWK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF744AIV bigBed narrowPeak conservative idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF510ZUJ 543381 ENCODE Processing Pipeline fa429c141a48a91f14e48f085d0347f2 https://www.encodeproject.org/files/ENCFF744AIV/@@download/ENCFF744AIV.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF712AXK bed narrowPeak optimal idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF001TDO, ENCFF106WRW, ENCFF134OVY, ENCFF604XWK 402996 ENCODE Processing Pipeline d4ef75a204c84efaad5df40feb9c957b https://www.encodeproject.org/files/ENCFF712AXK/@@download/ENCFF712AXK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF162UCA bigWig signal p-value ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF361KFD, ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 1067290088 ENCODE Processing Pipeline 7125f2c195e0597d7f02b623f4d1680f https://www.encodeproject.org/files/ENCFF162UCA/@@download/ENCFF162UCA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF859UMJ bigBed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF106WRW 13429133 ENCODE Processing Pipeline f7a395a2634ad7c049da2aca9b5aedad https://www.encodeproject.org/files/ENCFF859UMJ/@@download/ENCFF859UMJ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF127WCS bam unfiltered alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 50 ENCFF643CGH, ENCFF976LPV 2144928174 ENCODE Processing Pipeline 5619dfdb9c1860af0895bb7d28766e14 https://www.encodeproject.org/files/ENCFF127WCS/@@download/ENCFF127WCS.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF173BBS bam unfiltered alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 50 ENCFF145XWH, ENCFF643CGH 1206302915 ENCODE Processing Pipeline 1fba86e86a196b71baef94983b3fc670 https://www.encodeproject.org/files/ENCFF173BBS/@@download/ENCFF173BBS.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF908MXL bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 50 ENCFF145XWH, ENCFF643CGH 870323233 ENCODE Processing Pipeline 388367b292ba90d799e6979265467ccf https://www.encodeproject.org/files/ENCFF908MXL/@@download/ENCFF908MXL.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF507UJN bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 50 ENCFF643CGH, ENCFF976LPV 1552861162 ENCODE Processing Pipeline acf33d519bd6b83854332dc830c71747 https://www.encodeproject.org/files/ENCFF507UJN/@@download/ENCFF507UJN.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF897FKL bigWig signal p-value ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF092PMQ, ENCFF162ZOO, ENCFF908MXL 979694991 ENCODE Processing Pipeline 7844d1eba988ca9906b6dc630cbaa640 https://www.encodeproject.org/files/ENCFF897FKL/@@download/ENCFF897FKL.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF818QUH bigWig signal p-value ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF507UJN 1081490730 ENCODE Processing Pipeline 0b1a6c874696af9bc53c78366dab868c https://www.encodeproject.org/files/ENCFF818QUH/@@download/ENCFF818QUH.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF342EIJ bigWig signal p-value ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF507UJN, ENCFF908MXL 1112930840 ENCODE Processing Pipeline 084af16c8404bb02a449107791487392 https://www.encodeproject.org/files/ENCFF342EIJ/@@download/ENCFF342EIJ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF950ICC bigWig fold change over control ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF092PMQ, ENCFF162ZOO, ENCFF908MXL 665114073 ENCODE Processing Pipeline 0fc42eb35b7228c89786349cd1152d9b https://www.encodeproject.org/files/ENCFF950ICC/@@download/ENCFF950ICC.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF071PTI bigWig fold change over control ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF507UJN 988742064 ENCODE Processing Pipeline 4b7132e14f36e9e13740b77b5ea1a3ba https://www.encodeproject.org/files/ENCFF071PTI/@@download/ENCFF071PTI.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF745IWH bigWig fold change over control ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF507UJN, ENCFF908MXL 1260257715 ENCODE Processing Pipeline 0d50f01270cfd5e8e1c7d579c6907d5c https://www.encodeproject.org/files/ENCFF745IWH/@@download/ENCFF745IWH.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF316RDN bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF092PMQ, ENCFF162ZOO, ENCFF908MXL 6196811 ENCODE Processing Pipeline 999516396eec2cde6ea1b7a2f132c990 https://www.encodeproject.org/files/ENCFF316RDN/@@download/ENCFF316RDN.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF951LYB bed narrowPeak conservative idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF316RDN, ENCFF419RSJ, ENCFF526CVF, ENCFF864BPS 289679 ENCODE Processing Pipeline 133cad071ec1f2d8337e4f02f3575215 https://www.encodeproject.org/files/ENCFF951LYB/@@download/ENCFF951LYB.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF526CVF bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF507UJN 6743951 ENCODE Processing Pipeline 5cf4d36156dd1ec9a6f7b50c46b31fcb https://www.encodeproject.org/files/ENCFF526CVF/@@download/ENCFF526CVF.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF864BPS bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF507UJN, ENCFF908MXL 7005842 ENCODE Processing Pipeline 5be9c56718d6ad65f3f2adf8ad6240f2 https://www.encodeproject.org/files/ENCFF864BPS/@@download/ENCFF864BPS.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF417JQB bigBed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF526CVF 13329462 ENCODE Processing Pipeline 9cae20f683bd954b59e2c6e8f5f13196 https://www.encodeproject.org/files/ENCFF417JQB/@@download/ENCFF417JQB.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF205QHL bigBed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF316RDN 13415421 ENCODE Processing Pipeline e8ac445b27ca593a24cb65587a3fede0 https://www.encodeproject.org/files/ENCFF205QHL/@@download/ENCFF205QHL.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF485ZCG bigBed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF864BPS 13360968 ENCODE Processing Pipeline d01b96c7ca80cc010cc47f4b6c2f5361 https://www.encodeproject.org/files/ENCFF485ZCG/@@download/ENCFF485ZCG.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF194VBK bed narrowPeak optimal idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF316RDN, ENCFF419RSJ, ENCFF526CVF, ENCFF864BPS 405789 ENCODE Processing Pipeline 851d5f8c99376f6433641934c9eeeb00 https://www.encodeproject.org/files/ENCFF194VBK/@@download/ENCFF194VBK.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF635MTS bigBed narrowPeak optimal idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF194VBK 858369 ENCODE Processing Pipeline 9a5f019fcbfcbf5a28285f1e29474834 https://www.encodeproject.org/files/ENCFF635MTS/@@download/ENCFF635MTS.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF863GGM bigBed narrowPeak conservative idr thresholded peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF951LYB 544274 ENCODE Processing Pipeline 84fe2c515beb54418daabbfa8b1ce0f4 https://www.encodeproject.org/files/ENCFF863GGM/@@download/ENCFF863GGM.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF556LOK fastq reads ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 1 76 single-ended 1524515699 Richard Myers, HAIB 1fde63d0c539421e2bc0d0f4730d0157 SRA:SRR5331238 https://www.encodeproject.org/files/ENCFF556LOK/@@download/ENCFF556LOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF993VKM/ released inconsistent control read length, antibody characterized with exemption, mixed read lengths ENCFF446UUV fastq reads ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 1 50 single-ended 1263056275 Richard Myers, HAIB 45d72be7311c596552bd703b744a3140 SRA:SRR5331239 https://www.encodeproject.org/files/ENCFF446UUV/@@download/ENCFF446UUV.fastq.gz Illumina HiSeq 2000 /files/ENCFF774EJH/ released antibody characterized with exemption, mixed read lengths ENCFF047ILC bam unfiltered alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 50 ENCFF446UUV, ENCFF643CGH 1420843039 ENCODE Processing Pipeline bfd9001a73eb04f3ef904ef2f8eccb84 https://www.encodeproject.org/files/ENCFF047ILC/@@download/ENCFF047ILC.bam GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF426GAB bam unfiltered alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 50 ENCFF556LOK, ENCFF643CGH 1306633197 ENCODE Processing Pipeline 2916e32b0c0ebe2e5b1388aaf9887e92 https://www.encodeproject.org/files/ENCFF426GAB/@@download/ENCFF426GAB.bam GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF669FJO bam unfiltered alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 50 ENCFF556LOK, ENCFF807MUK 1303240785 ENCODE Processing Pipeline 17072366f8541997f14db27bf76deb18 https://www.encodeproject.org/files/ENCFF669FJO/@@download/ENCFF669FJO.bam hg19 released antibody characterized with exemption, mixed read lengths ENCFF056HVT bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 50 ENCFF446UUV, ENCFF643CGH 1018260336 ENCODE Processing Pipeline f349378b74a410e990d2ed137cb16325 https://www.encodeproject.org/files/ENCFF056HVT/@@download/ENCFF056HVT.bam GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF277XXK bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 50 ENCFF556LOK, ENCFF807MUK 985916483 ENCODE Processing Pipeline 17b791e2e9372cd6ceecf06865ef4f11 https://www.encodeproject.org/files/ENCFF277XXK/@@download/ENCFF277XXK.bam hg19 released antibody characterized with exemption, mixed read lengths ENCFF900QPQ bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 50 ENCFF556LOK, ENCFF643CGH 985787658 ENCODE Processing Pipeline c7c48fd1843dd396c775acf23d0f6960 https://www.encodeproject.org/files/ENCFF900QPQ/@@download/ENCFF900QPQ.bam GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF463TPW bam unfiltered alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 50 ENCFF446UUV, ENCFF807MUK 1416261240 ENCODE Processing Pipeline d93fb02353c3bc90dbb0ab42cd4e571e https://www.encodeproject.org/files/ENCFF463TPW/@@download/ENCFF463TPW.bam hg19 released antibody characterized with exemption, mixed read lengths ENCFF496KXN bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 50 ENCFF446UUV, ENCFF807MUK 1018521249 ENCODE Processing Pipeline 76bd268c0c19886a9c33629981e4bf00 https://www.encodeproject.org/files/ENCFF496KXN/@@download/ENCFF496KXN.bam hg19 released antibody characterized with exemption, mixed read lengths ENCFF470KQI bigWig signal p-value ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF277XXK, ENCFF454QBD, ENCFF847YDJ 759882354 ENCODE Processing Pipeline b7d990f92b094da38d8fe84995b18d92 https://www.encodeproject.org/files/ENCFF470KQI/@@download/ENCFF470KQI.bigWig hg19 released antibody characterized with exemption, mixed read lengths ENCFF405ZFU bigWig fold change over control ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 737454293 ENCODE Processing Pipeline 04b65a7580e08f464e5430bdd880963b https://www.encodeproject.org/files/ENCFF405ZFU/@@download/ENCFF405ZFU.bigWig hg19 released antibody characterized with exemption, mixed read lengths ENCFF133HPH bigWig signal p-value ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF277XXK, ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 872172530 ENCODE Processing Pipeline a7ca548262b47afcd536bfbe5a3bad9d https://www.encodeproject.org/files/ENCFF133HPH/@@download/ENCFF133HPH.bigWig hg19 released antibody characterized with exemption, mixed read lengths ENCFF469DWQ bigBed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF204QNV 13400045 ENCODE Processing Pipeline 3a81acc926d6c3cc335a437bca28cd4a https://www.encodeproject.org/files/ENCFF469DWQ/@@download/ENCFF469DWQ.bigBed hg19 released antibody characterized with exemption, mixed read lengths ENCFF292EOF bigWig signal p-value ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 910543325 ENCODE Processing Pipeline 65510e5613353b952ec26352d90a2999 https://www.encodeproject.org/files/ENCFF292EOF/@@download/ENCFF292EOF.bigWig hg19 released antibody characterized with exemption, mixed read lengths ENCFF711IOY bigWig fold change over control ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF277XXK, ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 1076240608 ENCODE Processing Pipeline 7b01948b649034e53227966afcb16d73 https://www.encodeproject.org/files/ENCFF711IOY/@@download/ENCFF711IOY.bigWig hg19 released antibody characterized with exemption, mixed read lengths ENCFF438LLN bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF277XXK, ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 6963927 ENCODE Processing Pipeline 8da2c2417956aedccde0b15abe913175 https://www.encodeproject.org/files/ENCFF438LLN/@@download/ENCFF438LLN.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF069OII bigBed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF438LLN 13418968 ENCODE Processing Pipeline 538750a07388ff688e12731b94431599 https://www.encodeproject.org/files/ENCFF069OII/@@download/ENCFF069OII.bigBed hg19 released antibody characterized with exemption, mixed read lengths ENCFF988WAF bed narrowPeak conservative idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF204QNV, ENCFF438LLN, ENCFF925VOV 587450 ENCODE Processing Pipeline 00e2911c430ac59c84433e36a0a49b18 https://www.encodeproject.org/files/ENCFF988WAF/@@download/ENCFF988WAF.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF217SNL bigWig fold change over control ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF277XXK, ENCFF454QBD, ENCFF847YDJ 692955740 ENCODE Processing Pipeline 03afe5b0bde32dad81f385715451455c https://www.encodeproject.org/files/ENCFF217SNL/@@download/ENCFF217SNL.bigWig hg19 released antibody characterized with exemption, mixed read lengths ENCFF204QNV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 6492911 ENCODE Processing Pipeline 9de266ebdbe9e0035b2c922738642fcf https://www.encodeproject.org/files/ENCFF204QNV/@@download/ENCFF204QNV.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF925VOV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF277XXK, ENCFF454QBD, ENCFF847YDJ 6133457 ENCODE Processing Pipeline 225a6eb7aa177f322f26910ce442b90d https://www.encodeproject.org/files/ENCFF925VOV/@@download/ENCFF925VOV.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF946VWH bigBed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF925VOV 13387072 ENCODE Processing Pipeline 6c51928a3171a38c17d0874769086d6a https://www.encodeproject.org/files/ENCFF946VWH/@@download/ENCFF946VWH.bigBed hg19 released antibody characterized with exemption, mixed read lengths ENCFF765ZOV bigBed narrowPeak optimal idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF511QHY 1251780 ENCODE Processing Pipeline f1af358b4115ce184bf058deccd55097 https://www.encodeproject.org/files/ENCFF765ZOV/@@download/ENCFF765ZOV.bigBed hg19 released antibody characterized with exemption, mixed read lengths ENCFF491JPM bigBed narrowPeak conservative idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF988WAF 1132399 ENCODE Processing Pipeline efb9488e1e33ed626e579bfcd66b4665 https://www.encodeproject.org/files/ENCFF491JPM/@@download/ENCFF491JPM.bigBed hg19 released antibody characterized with exemption, mixed read lengths ENCFF511QHY bed narrowPeak optimal idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF204QNV, ENCFF438LLN, ENCFF925VOV 668402 ENCODE Processing Pipeline 2a540d117bdccfec94aa0f5dc33dc677 https://www.encodeproject.org/files/ENCFF511QHY/@@download/ENCFF511QHY.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF126FSU bigWig signal p-value ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF092PMQ, ENCFF213VVQ, ENCFF900QPQ 799821343 ENCODE Processing Pipeline 96ffff71d79dcf5c6be2de38d37a5525 https://www.encodeproject.org/files/ENCFF126FSU/@@download/ENCFF126FSU.bigWig GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF786NPW bigWig signal p-value ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF056HVT, ENCFF092PMQ, ENCFF213VVQ 838730578 ENCODE Processing Pipeline ff18544cc704d6d1ba24316dee52c3f5 https://www.encodeproject.org/files/ENCFF786NPW/@@download/ENCFF786NPW.bigWig GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF078IDT bigWig signal p-value ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF056HVT, ENCFF092PMQ, ENCFF213VVQ, ENCFF900QPQ 1146039451 ENCODE Processing Pipeline b15bcff2d599337e86f1262b9140e767 https://www.encodeproject.org/files/ENCFF078IDT/@@download/ENCFF078IDT.bigWig GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF534OWD bigWig fold change over control ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF056HVT, ENCFF092PMQ, ENCFF213VVQ 732677538 ENCODE Processing Pipeline e8c9628e47f4df5c49257722023298fc https://www.encodeproject.org/files/ENCFF534OWD/@@download/ENCFF534OWD.bigWig GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF383COK bigWig fold change over control ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF092PMQ, ENCFF213VVQ, ENCFF900QPQ 706973741 ENCODE Processing Pipeline f9cdde531a2b6016bc27a7bae810f8b3 https://www.encodeproject.org/files/ENCFF383COK/@@download/ENCFF383COK.bigWig GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF152NWJ bigWig fold change over control ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF056HVT, ENCFF092PMQ, ENCFF213VVQ, ENCFF900QPQ 1083564980 ENCODE Processing Pipeline e204ff8f79d26718917b9721fca24d97 https://www.encodeproject.org/files/ENCFF152NWJ/@@download/ENCFF152NWJ.bigWig GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF854LEH bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF056HVT, ENCFF092PMQ, ENCFF213VVQ 6339723 ENCODE Processing Pipeline 88121965170dc85fbd7057b07039001c https://www.encodeproject.org/files/ENCFF854LEH/@@download/ENCFF854LEH.bed.gz GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF974TEI bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF092PMQ, ENCFF213VVQ, ENCFF900QPQ 5990521 ENCODE Processing Pipeline 5f9413804d50a7ae7c224968c18f34c8 https://www.encodeproject.org/files/ENCFF974TEI/@@download/ENCFF974TEI.bed.gz GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF211PSS bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF056HVT, ENCFF092PMQ, ENCFF213VVQ, ENCFF900QPQ 6866642 ENCODE Processing Pipeline 0bbab442c1d8d0f96f2e28a07215d854 https://www.encodeproject.org/files/ENCFF211PSS/@@download/ENCFF211PSS.bed.gz GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF070HSU bigBed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF854LEH 13392212 ENCODE Processing Pipeline af7103e625e692de2fb655b10c461fa9 https://www.encodeproject.org/files/ENCFF070HSU/@@download/ENCFF070HSU.bigBed GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF855BFC bigBed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF974TEI 13371222 ENCODE Processing Pipeline d94aa98f7792c966ad79b104cfbb6893 https://www.encodeproject.org/files/ENCFF855BFC/@@download/ENCFF855BFC.bigBed GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF893VZW bigBed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF211PSS 13416916 ENCODE Processing Pipeline 9a674e4ad2082d4d5a6beef36b6d5567 https://www.encodeproject.org/files/ENCFF893VZW/@@download/ENCFF893VZW.bigBed GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF429TTF bed narrowPeak conservative idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF211PSS, ENCFF419RSJ, ENCFF854LEH, ENCFF974TEI 585763 ENCODE Processing Pipeline 0f170d7b83a83f5e6232e5f2c409832d https://www.encodeproject.org/files/ENCFF429TTF/@@download/ENCFF429TTF.bed.gz GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF278VAF bigBed narrowPeak optimal idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF195IFB 1256919 ENCODE Processing Pipeline 033481be898c6c9c108bf515ef7d302e https://www.encodeproject.org/files/ENCFF278VAF/@@download/ENCFF278VAF.bigBed GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF909FDP bigBed narrowPeak conservative idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF429TTF 1130225 ENCODE Processing Pipeline 567c2d7ff631bc0dc65e8465c0a32de7 https://www.encodeproject.org/files/ENCFF909FDP/@@download/ENCFF909FDP.bigBed GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF195IFB bed narrowPeak optimal idr thresholded peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF211PSS, ENCFF419RSJ, ENCFF854LEH, ENCFF974TEI 670081 ENCODE Processing Pipeline baaa2bdfb02d2094530f3826d8684ed1 https://www.encodeproject.org/files/ENCFF195IFB/@@download/ENCFF195IFB.bed.gz GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF267LVE fastq reads ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF452EKB 1793262044 Michael Snyder, Stanford ae04b4e8b7f7be0ba26a236513e909c5 https://www.encodeproject.org/files/ENCFF267LVE/@@download/ENCFF267LVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF452EKB fastq reads ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF267LVE 1765927169 Michael Snyder, Stanford c9517932e0e5bb5c773e0bd8bc833677 https://www.encodeproject.org/files/ENCFF452EKB/@@download/ENCFF452EKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF404ITD fastq reads ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF792VBK 2337168262 Michael Snyder, Stanford d4d1300de059adf0876ba7a466618cf5 https://www.encodeproject.org/files/ENCFF404ITD/@@download/ENCFF404ITD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF792VBK fastq reads ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF404ITD 2397856069 Michael Snyder, Stanford 78e991f9f8610b1a5c7950a18f216bd9 https://www.encodeproject.org/files/ENCFF792VBK/@@download/ENCFF792VBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF699VCQ bam unfiltered alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF267LVE, ENCFF452EKB, ENCFF807MUK 3815637542 ENCODE Processing Pipeline fd2155a91190fbce3696c1ca592e9d98 https://www.encodeproject.org/files/ENCFF699VCQ/@@download/ENCFF699VCQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF710HBZ bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF267LVE, ENCFF452EKB, ENCFF807MUK 3010702501 ENCODE Processing Pipeline e842f51951e7682b75311d8b45158da2 https://www.encodeproject.org/files/ENCFF710HBZ/@@download/ENCFF710HBZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF514VMY bam unfiltered alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF404ITD, ENCFF792VBK, ENCFF807MUK 5038509468 ENCODE Processing Pipeline f83916a23aaee578a39e9e5108d4a6e7 https://www.encodeproject.org/files/ENCFF514VMY/@@download/ENCFF514VMY.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF527XUH bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF404ITD, ENCFF792VBK, ENCFF807MUK 3948130198 ENCODE Processing Pipeline 6f4b50045274020c42e9d1b7fdb6ce17 https://www.encodeproject.org/files/ENCFF527XUH/@@download/ENCFF527XUH.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF635BPD bam unfiltered alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF267LVE, ENCFF452EKB, ENCFF643CGH 3810780334 ENCODE Processing Pipeline cd4ee178a601b381d4410e5740d1d1f7 https://www.encodeproject.org/files/ENCFF635BPD/@@download/ENCFF635BPD.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF524KCA bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF267LVE, ENCFF452EKB, ENCFF643CGH 3014781489 ENCODE Processing Pipeline 39e3a909edfa88a4c35a64c4ed9cb485 https://www.encodeproject.org/files/ENCFF524KCA/@@download/ENCFF524KCA.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF559LTX bam unfiltered alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF404ITD, ENCFF643CGH, ENCFF792VBK 5035342202 ENCODE Processing Pipeline 7868cff73d0e044dda7fc4c1a1b03ba9 https://www.encodeproject.org/files/ENCFF559LTX/@@download/ENCFF559LTX.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF373JGV bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF404ITD, ENCFF643CGH, ENCFF792VBK 3952662944 ENCODE Processing Pipeline bc93940905577d51885b9b583376eb96 https://www.encodeproject.org/files/ENCFF373JGV/@@download/ENCFF373JGV.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF166BZU bigWig signal p-value ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF524KCA 943663045 ENCODE Processing Pipeline 90df2cc6472b4e887b4e4b3e34aec69a https://www.encodeproject.org/files/ENCFF166BZU/@@download/ENCFF166BZU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF353EYF bigBed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF883RAI 13102245 ENCODE Processing Pipeline 6b62fb113f17c2e96b2c789f634bb386 https://www.encodeproject.org/files/ENCFF353EYF/@@download/ENCFF353EYF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF894YAR bigBed narrowPeak optimal idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF869BYK 437090 ENCODE Processing Pipeline 5d8e3c9c9a911e7b64a10065dc8505ac https://www.encodeproject.org/files/ENCFF894YAR/@@download/ENCFF894YAR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF323TYY bigWig signal p-value ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF373JGV, ENCFF524KCA, ENCFF910IKB 1608446747 ENCODE Processing Pipeline e6141cc7238f8501ecb96fc63c65ec43 https://www.encodeproject.org/files/ENCFF323TYY/@@download/ENCFF323TYY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF354BBS bigWig signal p-value ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF373JGV, ENCFF910IKB 975554763 ENCODE Processing Pipeline ff25ce47816eaa9c4a612e078f908fa3 https://www.encodeproject.org/files/ENCFF354BBS/@@download/ENCFF354BBS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF703OGS bigWig fold change over control ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF524KCA 949925873 ENCODE Processing Pipeline 67c12653ec907e8f0a00f3a24ff6000f https://www.encodeproject.org/files/ENCFF703OGS/@@download/ENCFF703OGS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF422AHV bigWig fold change over control ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF373JGV, ENCFF524KCA, ENCFF910IKB 1970375095 ENCODE Processing Pipeline 85fe4c0fb7ff1dacd8d7f317f5dfae59 https://www.encodeproject.org/files/ENCFF422AHV/@@download/ENCFF422AHV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF631OBD bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF524KCA 6600323 ENCODE Processing Pipeline 9b19e1d26cb438cdf7f1b6605ce16265 https://www.encodeproject.org/files/ENCFF631OBD/@@download/ENCFF631OBD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF883RAI bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF373JGV, ENCFF524KCA, ENCFF910IKB 7192904 ENCODE Processing Pipeline 7b28f99b4cc58396792f70d6135de317 https://www.encodeproject.org/files/ENCFF883RAI/@@download/ENCFF883RAI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF869BYK bed narrowPeak optimal idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF631OBD, ENCFF658ICM, ENCFF883RAI 184513 ENCODE Processing Pipeline 1d7cd15c0c354140544e566a31b75604 https://www.encodeproject.org/files/ENCFF869BYK/@@download/ENCFF869BYK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF618GCH bigBed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF631OBD 13213587 ENCODE Processing Pipeline 7929c2a2fca4f849579b0c87b8519356 https://www.encodeproject.org/files/ENCFF618GCH/@@download/ENCFF618GCH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF722XQA bigWig fold change over control ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF373JGV, ENCFF910IKB 1134064055 ENCODE Processing Pipeline 54b8a7a3fa90163a06e67af30594f3df https://www.encodeproject.org/files/ENCFF722XQA/@@download/ENCFF722XQA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF658ICM bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF373JGV, ENCFF910IKB 6620635 ENCODE Processing Pipeline 015577ef6c12600028e4b5555f9e0bf6 https://www.encodeproject.org/files/ENCFF658ICM/@@download/ENCFF658ICM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF954QSX bed narrowPeak conservative idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF631OBD, ENCFF658ICM, ENCFF883RAI 131747 ENCODE Processing Pipeline 933ad235ebc4f2d14566ae60b99d8476 https://www.encodeproject.org/files/ENCFF954QSX/@@download/ENCFF954QSX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF908PTM bigBed narrowPeak conservative idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF954QSX 347699 ENCODE Processing Pipeline 118f348c98f8c68830e23d5c11e1cb5e https://www.encodeproject.org/files/ENCFF908PTM/@@download/ENCFF908PTM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF104JYY bigBed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF658ICM 13305304 ENCODE Processing Pipeline 103fda1883a355ad41595a310ac951e2 https://www.encodeproject.org/files/ENCFF104JYY/@@download/ENCFF104JYY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF039VJA bigBed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF824QXV 13094164 ENCODE Processing Pipeline a37b1e88bbbb9bbf5b9a52c6f23dd43a https://www.encodeproject.org/files/ENCFF039VJA/@@download/ENCFF039VJA.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF062IUC bigBed narrowPeak optimal idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF076MSV 441558 ENCODE Processing Pipeline 724d52634fc4dc93241e00e1b134c6d5 https://www.encodeproject.org/files/ENCFF062IUC/@@download/ENCFF062IUC.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF870PDS bigWig fold change over control ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF527XUH, ENCFF581ZJL, ENCFF710HBZ 1955440710 ENCODE Processing Pipeline 177abdf423c0004e3c297ab1199d1114 https://www.encodeproject.org/files/ENCFF870PDS/@@download/ENCFF870PDS.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF447WIA bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF527XUH, ENCFF581ZJL 6622782 ENCODE Processing Pipeline 0fc65caa5a29e1d351889a9150ccd059 https://www.encodeproject.org/files/ENCFF447WIA/@@download/ENCFF447WIA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF579KSC bed narrowPeak conservative idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF447WIA, ENCFF824QXV, ENCFF929HKG 132178 ENCODE Processing Pipeline dc783a5f1c899e228a149220be310d47 https://www.encodeproject.org/files/ENCFF579KSC/@@download/ENCFF579KSC.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF911LQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF579KSC 344939 ENCODE Processing Pipeline 487a1c2eadb9f50e2c78a838ff4bcd8c https://www.encodeproject.org/files/ENCFF911LQZ/@@download/ENCFF911LQZ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF661JVC bigWig signal p-value ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF527XUH, ENCFF581ZJL 1049885890 ENCODE Processing Pipeline cb8a2132656754101744f5165625c691 https://www.encodeproject.org/files/ENCFF661JVC/@@download/ENCFF661JVC.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF602EUV bigWig fold change over control ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF527XUH, ENCFF581ZJL 1135019743 ENCODE Processing Pipeline 4acd131259827916b2ef4f44abe3d847 https://www.encodeproject.org/files/ENCFF602EUV/@@download/ENCFF602EUV.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF802XIQ bigWig signal p-value ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF710HBZ 1016369167 ENCODE Processing Pipeline 9b4a11d3e9abe81569fe4a666d26ec8e https://www.encodeproject.org/files/ENCFF802XIQ/@@download/ENCFF802XIQ.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF888ULX bigWig signal p-value ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF527XUH, ENCFF581ZJL, ENCFF710HBZ 1670341154 ENCODE Processing Pipeline a524f6f56d5ccf115abbc8b56d695929 https://www.encodeproject.org/files/ENCFF888ULX/@@download/ENCFF888ULX.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF254SOP bigBed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF447WIA 13292625 ENCODE Processing Pipeline 04caf148422c6576ca5268dce2d66dd7 https://www.encodeproject.org/files/ENCFF254SOP/@@download/ENCFF254SOP.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF626KUT bigWig fold change over control ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF710HBZ 945490380 ENCODE Processing Pipeline 8958e7368eddb1b25f057d145ef05131 https://www.encodeproject.org/files/ENCFF626KUT/@@download/ENCFF626KUT.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF824QXV bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF527XUH, ENCFF581ZJL, ENCFF710HBZ 7194279 ENCODE Processing Pipeline 1eb0173ea8cccdc441a9e2e343607aeb https://www.encodeproject.org/files/ENCFF824QXV/@@download/ENCFF824QXV.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF638TJG bigBed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF929HKG 13214559 ENCODE Processing Pipeline 192a9b01533ecc410f8792e357e07fe0 https://www.encodeproject.org/files/ENCFF638TJG/@@download/ENCFF638TJG.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF076MSV bed narrowPeak optimal idr thresholded peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF447WIA, ENCFF824QXV, ENCFF929HKG 189535 ENCODE Processing Pipeline a8d2daa22d837ec2dba4082ef01d10e6 https://www.encodeproject.org/files/ENCFF076MSV/@@download/ENCFF076MSV.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF929HKG bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF710HBZ 6616578 ENCODE Processing Pipeline 52c7e8259913e8e9180a9d2c6578d013 https://www.encodeproject.org/files/ENCFF929HKG/@@download/ENCFF929HKG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF760NIU fastq reads ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF541ASV 3039544131 Michael Snyder, Stanford ca47cd3581b3ffcbe50ac678c66d4213 SRA:SRR6213522 https://www.encodeproject.org/files/ENCFF760NIU/@@download/ENCFF760NIU.fastq.gz Illumina HiSeq 4000 /files/ENCFF423TLJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF541ASV fastq reads ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF760NIU 2619391389 Michael Snyder, Stanford de27243310d0227d6185a7438c580cf5 SRA:SRR6213522 https://www.encodeproject.org/files/ENCFF541ASV/@@download/ENCFF541ASV.fastq.gz Illumina HiSeq 4000 /files/ENCFF635NCC/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF758JXA bam alignments ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF541ASV, ENCFF643CGH, ENCFF760NIU 2818684849 ENCODE Processing Pipeline bc4e4e7e60c8ee29fb2a5187debce572 https://www.encodeproject.org/files/ENCFF758JXA/@@download/ENCFF758JXA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF779TNF bam unfiltered alignments ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF541ASV, ENCFF643CGH, ENCFF760NIU 4917874329 ENCODE Processing Pipeline 935b939453b9430e1b038c5dac90786a https://www.encodeproject.org/files/ENCFF779TNF/@@download/ENCFF779TNF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF035ALO bam unfiltered alignments ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF541ASV, ENCFF760NIU, ENCFF807MUK 4918487233 ENCODE Processing Pipeline 842bae0451ee60b1b5cd9eaaf54d3dc8 https://www.encodeproject.org/files/ENCFF035ALO/@@download/ENCFF035ALO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF644OEB bam alignments ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF541ASV, ENCFF760NIU, ENCFF807MUK 2815045291 ENCODE Processing Pipeline a245b6e47498e598f018c3f6e0bb099e https://www.encodeproject.org/files/ENCFF644OEB/@@download/ENCFF644OEB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF525RDT bigWig signal p-value ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF644OEB, ENCFF679FAU 1207053727 ENCODE Processing Pipeline bdd28239237e28d8814dba35024638fe https://www.encodeproject.org/files/ENCFF525RDT/@@download/ENCFF525RDT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF562MDO bed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF644OEB, ENCFF679FAU 5187744 ENCODE Processing Pipeline f0a8b258977ad2bda4f02855396e0036 https://www.encodeproject.org/files/ENCFF562MDO/@@download/ENCFF562MDO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF142GLP bigBed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF562MDO 11587005 ENCODE Processing Pipeline 2e28f7cdcf18b340764a0841efe25ab8 https://www.encodeproject.org/files/ENCFF142GLP/@@download/ENCFF142GLP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF557ALA bigWig fold change over control ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF644OEB, ENCFF679FAU 1048111224 ENCODE Processing Pipeline d59a57090e67ea17801f63f5d4c7d7cb https://www.encodeproject.org/files/ENCFF557ALA/@@download/ENCFF557ALA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767YMW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF562MDO 288082 ENCODE Processing Pipeline ad0c50f040130086c920b0d08f7ea218 https://www.encodeproject.org/files/ENCFF767YMW/@@download/ENCFF767YMW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF922RVK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF767YMW 564075 ENCODE Processing Pipeline ef9be61cfe80df998f405722de4c8f84 https://www.encodeproject.org/files/ENCFF922RVK/@@download/ENCFF922RVK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF028ZYN bigWig fold change over control ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF051LKD, ENCFF758JXA 1066294440 ENCODE Processing Pipeline 74c7d08969bbd0d56349d89be317e2ba https://www.encodeproject.org/files/ENCFF028ZYN/@@download/ENCFF028ZYN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF452LMV bigWig signal p-value ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF051LKD, ENCFF758JXA 1115020312 ENCODE Processing Pipeline 793ebb3c2d92e320fe28fefa26af568a https://www.encodeproject.org/files/ENCFF452LMV/@@download/ENCFF452LMV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF289FHU bed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF051LKD, ENCFF758JXA 5185288 ENCODE Processing Pipeline 78b9d3019b1e2e684e0ff40306e1180e https://www.encodeproject.org/files/ENCFF289FHU/@@download/ENCFF289FHU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF566ULU bigBed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF289FHU 11600140 ENCODE Processing Pipeline 9be82d191a03088cd9f857de4738c9da https://www.encodeproject.org/files/ENCFF566ULU/@@download/ENCFF566ULU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF579GUD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF289FHU, ENCFF419RSJ 286138 ENCODE Processing Pipeline 6ab125cc2822f9a39091dfaab6e9928e https://www.encodeproject.org/files/ENCFF579GUD/@@download/ENCFF579GUD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF973QJC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF579GUD 562081 ENCODE Processing Pipeline fd2bac0a329476d7f10680aeb638d952 https://www.encodeproject.org/files/ENCFF973QJC/@@download/ENCFF973QJC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF674QTV fastq reads ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 1 ENCFF478YYA 3224589053 Michael Snyder, Stanford 15afcbbe9f6819d6137c33503bebb5bb SRA:SRR5111090 https://www.encodeproject.org/files/ENCFF674QTV/@@download/ENCFF674QTV.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking ENCFF478YYA fastq reads ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 2 ENCFF674QTV 3451745793 Michael Snyder, Stanford 101305b7ec245b60a8d3debc9b7d9ec6 SRA:SRR5111090 https://www.encodeproject.org/files/ENCFF478YYA/@@download/ENCFF478YYA.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking ENCFF097JJW fastq reads ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 1 ENCFF024XVW 3255461101 Michael Snyder, Stanford 14902c74384665e71721fb294b32fa98 SRA:SRR5111089 https://www.encodeproject.org/files/ENCFF097JJW/@@download/ENCFF097JJW.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking ENCFF024XVW fastq reads ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 2 ENCFF097JJW 3571497171 Michael Snyder, Stanford 950c95bec56f893b671b6252c8be8146 SRA:SRR5111089 https://www.encodeproject.org/files/ENCFF024XVW/@@download/ENCFF024XVW.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking ENCFF470JWA bam unfiltered alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 100 ENCFF478YYA, ENCFF674QTV, ENCFF807MUK 6510771148 ENCODE Processing Pipeline 81b747375aada59bdadf7056a7722739 https://www.encodeproject.org/files/ENCFF470JWA/@@download/ENCFF470JWA.bam hg19 released mild to moderate bottlenecking ENCFF314XTF bam unfiltered alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 100 ENCFF024XVW, ENCFF097JJW, ENCFF807MUK 6731069701 ENCODE Processing Pipeline b4a3252b24045e2dbee1d7c47b3d7857 https://www.encodeproject.org/files/ENCFF314XTF/@@download/ENCFF314XTF.bam hg19 released mild to moderate bottlenecking ENCFF537OFY bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 100 ENCFF024XVW, ENCFF097JJW, ENCFF807MUK 5351927440 ENCODE Processing Pipeline 5d28ee22aa5310034c85aadabbb4c80e https://www.encodeproject.org/files/ENCFF537OFY/@@download/ENCFF537OFY.bam hg19 released mild to moderate bottlenecking ENCFF017WNE bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 100 ENCFF478YYA, ENCFF674QTV, ENCFF807MUK 5165022473 ENCODE Processing Pipeline e6f228c7ad99e5978bb1efae36f5413e https://www.encodeproject.org/files/ENCFF017WNE/@@download/ENCFF017WNE.bam hg19 released mild to moderate bottlenecking ENCFF913WBO bam unfiltered alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 100 ENCFF478YYA, ENCFF643CGH, ENCFF674QTV 6521979907 ENCODE Processing Pipeline a7139658e726465bf0c60c4116c15d84 https://www.encodeproject.org/files/ENCFF913WBO/@@download/ENCFF913WBO.bam GRCh38 released mild to moderate bottlenecking ENCFF826MFW bam unfiltered alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 100 ENCFF024XVW, ENCFF097JJW, ENCFF643CGH 6742856844 ENCODE Processing Pipeline 81a76a76368851f6c12e41c4a7167f7a https://www.encodeproject.org/files/ENCFF826MFW/@@download/ENCFF826MFW.bam GRCh38 released mild to moderate bottlenecking ENCFF835IGH bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 100 ENCFF024XVW, ENCFF097JJW, ENCFF643CGH 5360328280 ENCODE Processing Pipeline 4b13f5382d3f644e8069ecc9c53f0be7 https://www.encodeproject.org/files/ENCFF835IGH/@@download/ENCFF835IGH.bam GRCh38 released mild to moderate bottlenecking ENCFF038DYY bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 100 ENCFF478YYA, ENCFF643CGH, ENCFF674QTV 5172077713 ENCODE Processing Pipeline 4928b8de1319e549ca1fc1372924249e https://www.encodeproject.org/files/ENCFF038DYY/@@download/ENCFF038DYY.bam GRCh38 released mild to moderate bottlenecking ENCFF989BRN bigWig signal p-value ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF705ARK, ENCFF802NAW, ENCFF835IGH 1866312642 ENCODE Processing Pipeline 97f1259b9a780f44b377dfffa9327130 https://www.encodeproject.org/files/ENCFF989BRN/@@download/ENCFF989BRN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF985AZM bigWig signal p-value ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF038DYY, ENCFF705ARK, ENCFF802NAW, ENCFF835IGH 2340267199 ENCODE Processing Pipeline afd6f11261bf5267e3e5ce7792d82cd1 https://www.encodeproject.org/files/ENCFF985AZM/@@download/ENCFF985AZM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF453TXW bigWig signal p-value ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF038DYY, ENCFF705ARK, ENCFF802NAW 1891550702 ENCODE Processing Pipeline e6ec4e4ffb1f762d560ecaddb25d323c https://www.encodeproject.org/files/ENCFF453TXW/@@download/ENCFF453TXW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF275IAO bigWig fold change over control ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF705ARK, ENCFF802NAW, ENCFF835IGH 1977682209 ENCODE Processing Pipeline 9e9911a4205f5f1d7cd9187257a5fe56 https://www.encodeproject.org/files/ENCFF275IAO/@@download/ENCFF275IAO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF574UQO bigWig fold change over control ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF038DYY, ENCFF705ARK, ENCFF802NAW 1957226220 ENCODE Processing Pipeline 2b992fe8c5b0eb20c0d5d6703da76b52 https://www.encodeproject.org/files/ENCFF574UQO/@@download/ENCFF574UQO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF588JAY bigWig fold change over control ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF038DYY, ENCFF705ARK, ENCFF802NAW, ENCFF835IGH 2583894994 ENCODE Processing Pipeline 81a14109b8c8d7a4e048300a48d82ea6 https://www.encodeproject.org/files/ENCFF588JAY/@@download/ENCFF588JAY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF908CAI bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF038DYY, ENCFF705ARK, ENCFF802NAW 7003254 ENCODE Processing Pipeline db4ace1ce7bf42f64cdabf667fcf1931 https://www.encodeproject.org/files/ENCFF908CAI/@@download/ENCFF908CAI.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF210ADR bigBed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF028TUB 11134571 ENCODE Processing Pipeline e6b50433ba2240c4ebad3e06110abc0d https://www.encodeproject.org/files/ENCFF210ADR/@@download/ENCFF210ADR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF028TUB bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF705ARK, ENCFF802NAW, ENCFF835IGH 6960333 ENCODE Processing Pipeline 347b0a0c3f27c213c005f1b26ac59b6a https://www.encodeproject.org/files/ENCFF028TUB/@@download/ENCFF028TUB.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF193JDJ bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF038DYY, ENCFF705ARK, ENCFF802NAW, ENCFF835IGH 7184422 ENCODE Processing Pipeline e7dfedc04083090cc25aeb20e0a915f5 https://www.encodeproject.org/files/ENCFF193JDJ/@@download/ENCFF193JDJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF022UXM bigBed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF193JDJ 10823094 ENCODE Processing Pipeline d3a0157b3a5c04d44cae7eb9ad4c81c0 https://www.encodeproject.org/files/ENCFF022UXM/@@download/ENCFF022UXM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF774HLW bigBed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF908CAI 11084412 ENCODE Processing Pipeline 998ba2198eec93bf0ca98deb71bc97c4 https://www.encodeproject.org/files/ENCFF774HLW/@@download/ENCFF774HLW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF828UDL bigBed narrowPeak optimal idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF708RSP 102497 ENCODE Processing Pipeline b4b9f8f035880330d657d8c67dd8d968 https://www.encodeproject.org/files/ENCFF828UDL/@@download/ENCFF828UDL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF706NPK bed narrowPeak conservative idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF028TUB, ENCFF193JDJ, ENCFF419RSJ, ENCFF908CAI 13734 ENCODE Processing Pipeline f8973ea60ade47b0a278ae48fe891470 https://www.encodeproject.org/files/ENCFF706NPK/@@download/ENCFF706NPK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF473KVH bigBed narrowPeak conservative idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF706NPK 88311 ENCODE Processing Pipeline 6dda7340ffbd037e2f66b1ef5fbf33b3 https://www.encodeproject.org/files/ENCFF473KVH/@@download/ENCFF473KVH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF708RSP bed narrowPeak optimal idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF028TUB, ENCFF193JDJ, ENCFF419RSJ, ENCFF908CAI 21199 ENCODE Processing Pipeline be035e1bf01d7c2d0b9008b79c244ce8 https://www.encodeproject.org/files/ENCFF708RSP/@@download/ENCFF708RSP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF329VFK bigWig signal p-value ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF017WNE, ENCFF529BVI, ENCFF772FBN 1927201040 ENCODE Processing Pipeline 99d1d14c104136250bc9d77a965df768 https://www.encodeproject.org/files/ENCFF329VFK/@@download/ENCFF329VFK.bigWig hg19 released mild to moderate bottlenecking ENCFF776XFZ bigWig signal p-value ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 1895490404 ENCODE Processing Pipeline 0bb92ca9b96a769b7c0dc1ee3f28365c https://www.encodeproject.org/files/ENCFF776XFZ/@@download/ENCFF776XFZ.bigWig hg19 released mild to moderate bottlenecking ENCFF097NWS bigWig signal p-value ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF017WNE, ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 2374413612 ENCODE Processing Pipeline e24b2e3a3a77d4c146ff7993deeafc4d https://www.encodeproject.org/files/ENCFF097NWS/@@download/ENCFF097NWS.bigWig hg19 released mild to moderate bottlenecking ENCFF037TEG bigWig fold change over control ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 1987712726 ENCODE Processing Pipeline 10f475edbb193d9cfccb14fa9e5a4527 https://www.encodeproject.org/files/ENCFF037TEG/@@download/ENCFF037TEG.bigWig hg19 released mild to moderate bottlenecking ENCFF615UCS bigWig fold change over control ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF017WNE, ENCFF529BVI, ENCFF772FBN 1990279610 ENCODE Processing Pipeline d39fb05115a458ab4c3d3621819dfb09 https://www.encodeproject.org/files/ENCFF615UCS/@@download/ENCFF615UCS.bigWig hg19 released mild to moderate bottlenecking ENCFF761HEQ bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 6952302 ENCODE Processing Pipeline 32f6644e93b2f7f0eb8f23edf41cec97 https://www.encodeproject.org/files/ENCFF761HEQ/@@download/ENCFF761HEQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF868SVS bigBed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF599ICL 10809502 ENCODE Processing Pipeline eedea27406b7373976739c9b0067de84 https://www.encodeproject.org/files/ENCFF868SVS/@@download/ENCFF868SVS.bigBed hg19 released mild to moderate bottlenecking ENCFF813VLK bed narrowPeak optimal idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF230ONV, ENCFF599ICL, ENCFF761HEQ 20025 ENCODE Processing Pipeline 056a79d036d303f6d0cda17c93bb1e4f https://www.encodeproject.org/files/ENCFF813VLK/@@download/ENCFF813VLK.bed.gz hg19 released mild to moderate bottlenecking ENCFF230ONV bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF017WNE, ENCFF529BVI, ENCFF772FBN 6993974 ENCODE Processing Pipeline 467a0f297fe89e56593980a3c5bf98a2 https://www.encodeproject.org/files/ENCFF230ONV/@@download/ENCFF230ONV.bed.gz hg19 released mild to moderate bottlenecking ENCFF802KPB bigBed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF761HEQ 11112770 ENCODE Processing Pipeline 4b8f726f65a9590bb407985e2e6c535c https://www.encodeproject.org/files/ENCFF802KPB/@@download/ENCFF802KPB.bigBed hg19 released mild to moderate bottlenecking ENCFF279ABE bed narrowPeak conservative idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF230ONV, ENCFF599ICL, ENCFF761HEQ 13041 ENCODE Processing Pipeline b2768726df28659011e6b1a1dc055e90 https://www.encodeproject.org/files/ENCFF279ABE/@@download/ENCFF279ABE.bed.gz hg19 released mild to moderate bottlenecking ENCFF923INK bigWig fold change over control ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF017WNE, ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 2615192244 ENCODE Processing Pipeline cb2f97790ce7df76f2df175b05d5cc3e https://www.encodeproject.org/files/ENCFF923INK/@@download/ENCFF923INK.bigWig hg19 released mild to moderate bottlenecking ENCFF539FEY bigBed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF230ONV 11066140 ENCODE Processing Pipeline a0b4f1debb911bc1f045c397c613748f https://www.encodeproject.org/files/ENCFF539FEY/@@download/ENCFF539FEY.bigBed hg19 released mild to moderate bottlenecking ENCFF734EAG bigBed narrowPeak conservative idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF279ABE 85042 ENCODE Processing Pipeline 21fbfbf8d52cdfbe1bd3a097fa7d62c6 https://www.encodeproject.org/files/ENCFF734EAG/@@download/ENCFF734EAG.bigBed hg19 released mild to moderate bottlenecking ENCFF605ZEI bigBed narrowPeak optimal idr thresholded peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF813VLK 97607 ENCODE Processing Pipeline bb4a5dd017869a1ef4acdae3873ee0ba https://www.encodeproject.org/files/ENCFF605ZEI/@@download/ENCFF605ZEI.bigBed hg19 released mild to moderate bottlenecking ENCFF599ICL bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF017WNE, ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 7186897 ENCODE Processing Pipeline 7aa90eb19a92db39350a68c9afa7c2c1 https://www.encodeproject.org/files/ENCFF599ICL/@@download/ENCFF599ICL.bed.gz hg19 released mild to moderate bottlenecking ENCFF754PHR bam unfiltered alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF548SNS, ENCFF807MUK, ENCFF898MPN 5387473001 ENCODE Processing Pipeline c4b645a122f763e3b2333da3c328cd73 https://www.encodeproject.org/files/ENCFF754PHR/@@download/ENCFF754PHR.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF126EBO bam unfiltered alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF807MUK, ENCFF865UHF, ENCFF990FFM 3361129832 ENCODE Processing Pipeline 9a572fcb1468630d2f7577a3e657e45d https://www.encodeproject.org/files/ENCFF126EBO/@@download/ENCFF126EBO.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF548SNS fastq reads ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF898MPN 2467330143 Michael Snyder, Stanford 006ddecfef7da4399e5463ac391db569 SRA:SRR5111359 https://www.encodeproject.org/files/ENCFF548SNS/@@download/ENCFF548SNS.fastq.gz Illumina HiSeq 2000 /files/ENCFF487HZM/ released control low read depth, low read depth, missing genetic modification characterization ENCFF865UHF fastq reads ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF990FFM 1548780859 Michael Snyder, Stanford 516f14bc99210afd53f6666a0a1f2cdf SRA:SRR5111358 https://www.encodeproject.org/files/ENCFF865UHF/@@download/ENCFF865UHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF510RBZ/ released control low read depth, low read depth, missing genetic modification characterization ENCFF898MPN fastq reads ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF548SNS 2438105924 Michael Snyder, Stanford 794dbed2872c69da0a1a3c9aa49d53f6 SRA:SRR5111359 https://www.encodeproject.org/files/ENCFF898MPN/@@download/ENCFF898MPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF510RBZ/ released control low read depth, low read depth, missing genetic modification characterization ENCFF990FFM fastq reads ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF865UHF 1468239433 Michael Snyder, Stanford abcd9cbdb041caeec9a65a408fef8af3 SRA:SRR5111358 https://www.encodeproject.org/files/ENCFF990FFM/@@download/ENCFF990FFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF487HZM/ released control low read depth, low read depth, missing genetic modification characterization ENCFF956MXT bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF807MUK, ENCFF865UHF, ENCFF990FFM 2813146266 ENCODE Processing Pipeline 1b7d4c52d5ce1c2d548c94b24d59f5bd https://www.encodeproject.org/files/ENCFF956MXT/@@download/ENCFF956MXT.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF134DGA bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF548SNS, ENCFF807MUK, ENCFF898MPN 4551397097 ENCODE Processing Pipeline 02aa5f53455f82dbf7eb66aaf638eb00 https://www.encodeproject.org/files/ENCFF134DGA/@@download/ENCFF134DGA.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF180SRK bigWig signal p-value ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF504MHQ, ENCFF956MXT 533143607 ENCODE Processing Pipeline 0490a866e53094afa6d4942d0ac3a9dd https://www.encodeproject.org/files/ENCFF180SRK/@@download/ENCFF180SRK.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF595YYG bigWig signal p-value ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF134DGA, ENCFF504MHQ 501577705 ENCODE Processing Pipeline 0c7b04cca10d3f664cd820a230884b45 https://www.encodeproject.org/files/ENCFF595YYG/@@download/ENCFF595YYG.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF559ULD bigWig signal p-value ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF134DGA, ENCFF504MHQ, ENCFF956MXT 522413973 ENCODE Processing Pipeline 52e32ba53f2231ab8bb76095006508ee https://www.encodeproject.org/files/ENCFF559ULD/@@download/ENCFF559ULD.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF775ZLD bigWig fold change over control ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF134DGA, ENCFF504MHQ 752781385 ENCODE Processing Pipeline eddbd84e47eb50e106d3315ab2c38d92 https://www.encodeproject.org/files/ENCFF775ZLD/@@download/ENCFF775ZLD.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF283MZY bigWig fold change over control ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF134DGA, ENCFF504MHQ, ENCFF956MXT 1102644964 ENCODE Processing Pipeline 4bead6fa6189142d1c6577a47763471a https://www.encodeproject.org/files/ENCFF283MZY/@@download/ENCFF283MZY.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF253MPM bigWig fold change over control ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF504MHQ, ENCFF956MXT 560893072 ENCODE Processing Pipeline 2b01ab81076a2fa7f7b5a97794629bf6 https://www.encodeproject.org/files/ENCFF253MPM/@@download/ENCFF253MPM.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF692PZN bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF134DGA, ENCFF504MHQ 5762717 ENCODE Processing Pipeline 451091687b3aefde73fb058b458e4c48 https://www.encodeproject.org/files/ENCFF692PZN/@@download/ENCFF692PZN.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF645BHJ bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF504MHQ, ENCFF956MXT 5519587 ENCODE Processing Pipeline 5be4408221069af6c93c53b0359ca945 https://www.encodeproject.org/files/ENCFF645BHJ/@@download/ENCFF645BHJ.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF421DGE bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF134DGA, ENCFF504MHQ, ENCFF956MXT 6621004 ENCODE Processing Pipeline e080afe1cdb9112a0faa67d47f8cc323 https://www.encodeproject.org/files/ENCFF421DGE/@@download/ENCFF421DGE.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF839EAL bigBed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF692PZN 11087671 ENCODE Processing Pipeline 9a39ec9778399cb51f8c18e132253c43 https://www.encodeproject.org/files/ENCFF839EAL/@@download/ENCFF839EAL.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF849LZZ bigBed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF645BHJ 11073257 ENCODE Processing Pipeline f3613f1724b65374f82581a0052dedb7 https://www.encodeproject.org/files/ENCFF849LZZ/@@download/ENCFF849LZZ.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF514ZLW bigBed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF421DGE 13080730 ENCODE Processing Pipeline 09b1764d39a3a0dad718d192f9056a67 https://www.encodeproject.org/files/ENCFF514ZLW/@@download/ENCFF514ZLW.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF743WHS bam unfiltered alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF548SNS, ENCFF643CGH, ENCFF898MPN 5395376189 ENCODE Processing Pipeline 7fc4f20de43eee0f2e4545c5d9dba871 https://www.encodeproject.org/files/ENCFF743WHS/@@download/ENCFF743WHS.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF631AMI bam unfiltered alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF643CGH, ENCFF865UHF, ENCFF990FFM 3365002172 ENCODE Processing Pipeline 0925ac44a25967794ef0dfa7c4d44d13 https://www.encodeproject.org/files/ENCFF631AMI/@@download/ENCFF631AMI.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF656BKZ bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF548SNS, ENCFF643CGH, ENCFF898MPN 4551293399 ENCODE Processing Pipeline 8943d1611f1b499a13f0674815ff82dd https://www.encodeproject.org/files/ENCFF656BKZ/@@download/ENCFF656BKZ.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF670SFK bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF643CGH, ENCFF865UHF, ENCFF990FFM 2812631763 ENCODE Processing Pipeline a85b263d608a6a5a60ec2f11c8755826 https://www.encodeproject.org/files/ENCFF670SFK/@@download/ENCFF670SFK.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF393WZB bigWig signal p-value ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF102ZZG, ENCFF670SFK 535751566 ENCODE Processing Pipeline 65da658fe7c2c58bb6413a88f5c7e758 https://www.encodeproject.org/files/ENCFF393WZB/@@download/ENCFF393WZB.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF202HRI bigWig signal p-value ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF102ZZG, ENCFF656BKZ 502176207 ENCODE Processing Pipeline 27ee8b8b354fb0e23109aa330d51f252 https://www.encodeproject.org/files/ENCFF202HRI/@@download/ENCFF202HRI.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF841YBZ bigWig signal p-value ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF102ZZG, ENCFF656BKZ, ENCFF670SFK 525457341 ENCODE Processing Pipeline 574089989f2a89f4388390c96629097d https://www.encodeproject.org/files/ENCFF841YBZ/@@download/ENCFF841YBZ.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF580XFG bigWig fold change over control ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF102ZZG, ENCFF670SFK 564668279 ENCODE Processing Pipeline aab0ec0d1123e46de02ad661c9da3996 https://www.encodeproject.org/files/ENCFF580XFG/@@download/ENCFF580XFG.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF498ETW bigWig fold change over control ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF102ZZG, ENCFF656BKZ 757092100 ENCODE Processing Pipeline 2332d836fe62b2550f4f1548c5526095 https://www.encodeproject.org/files/ENCFF498ETW/@@download/ENCFF498ETW.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF344GVP bigWig fold change over control ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF102ZZG, ENCFF656BKZ, ENCFF670SFK 1109078847 ENCODE Processing Pipeline a22faef30276ccb11e57b4896d0e0a03 https://www.encodeproject.org/files/ENCFF344GVP/@@download/ENCFF344GVP.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF812JMG bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF102ZZG, ENCFF656BKZ 5592616 ENCODE Processing Pipeline 4e3ba65ee3b7bbaf17915f4298cae7d8 https://www.encodeproject.org/files/ENCFF812JMG/@@download/ENCFF812JMG.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF543FMX bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF102ZZG, ENCFF670SFK 5394840 ENCODE Processing Pipeline 4da059ec466c4e74d9abf7f953967290 https://www.encodeproject.org/files/ENCFF543FMX/@@download/ENCFF543FMX.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF268KZF bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF102ZZG, ENCFF656BKZ, ENCFF670SFK 6470265 ENCODE Processing Pipeline 562aef28aefc237c01668768e3f10222 https://www.encodeproject.org/files/ENCFF268KZF/@@download/ENCFF268KZF.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF920NIX bigBed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF543FMX 11044638 ENCODE Processing Pipeline 323fc8796b6128c4f0ffe1cff6cd4eae https://www.encodeproject.org/files/ENCFF920NIX/@@download/ENCFF920NIX.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF880KFR bigBed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF812JMG 11038096 ENCODE Processing Pipeline 56254cf3865d6eaee30c45f47c9b5301 https://www.encodeproject.org/files/ENCFF880KFR/@@download/ENCFF880KFR.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF964JMZ bigBed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF268KZF 13090298 ENCODE Processing Pipeline 70fe3bdd23410467329138b21b449b9e https://www.encodeproject.org/files/ENCFF964JMZ/@@download/ENCFF964JMZ.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF804KSB bed narrowPeak optimal idr thresholded peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF268KZF, ENCFF419RSJ, ENCFF543FMX, ENCFF812JMG 388044 ENCODE Processing Pipeline e04edf5fc2da7d2b966ebe8ec4e4296c https://www.encodeproject.org/files/ENCFF804KSB/@@download/ENCFF804KSB.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF091BLE bigBed narrowPeak optimal idr thresholded peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF804KSB 815562 ENCODE Processing Pipeline aa5b8da8af20134ffb3a967b99232da6 https://www.encodeproject.org/files/ENCFF091BLE/@@download/ENCFF091BLE.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF332WRL bed narrowPeak conservative idr thresholded peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF421DGE, ENCFF645BHJ, ENCFF692PZN 330015 ENCODE Processing Pipeline 64dd3223c154b5af1dd1e9f5a68f6bed https://www.encodeproject.org/files/ENCFF332WRL/@@download/ENCFF332WRL.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF404YMX bed narrowPeak optimal idr thresholded peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF421DGE, ENCFF645BHJ, ENCFF692PZN 364092 ENCODE Processing Pipeline 45811baa3b4f022a78ddb6fa4be88278 https://www.encodeproject.org/files/ENCFF404YMX/@@download/ENCFF404YMX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF139OHF bigBed narrowPeak optimal idr thresholded peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF404YMX 621913 ENCODE Processing Pipeline 54e00f74fec64d42596a1e1ded720e3b https://www.encodeproject.org/files/ENCFF139OHF/@@download/ENCFF139OHF.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF684GEJ bigBed narrowPeak conservative idr thresholded peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF332WRL 579981 ENCODE Processing Pipeline cb518b89f197b120e8d90b81e7c8c11c https://www.encodeproject.org/files/ENCFF684GEJ/@@download/ENCFF684GEJ.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF032ITP fastq reads ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF615YKQ 1908772334 Michael Snyder, Stanford d1415490fd791fc0a01b1e1c23565e7e SRA:SRR6213094 https://www.encodeproject.org/files/ENCFF032ITP/@@download/ENCFF032ITP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF615YKQ fastq reads ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF032ITP 1865083517 Michael Snyder, Stanford c10d1f7f0a872710ad242ca717a3fc9e SRA:SRR6213094 https://www.encodeproject.org/files/ENCFF615YKQ/@@download/ENCFF615YKQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF337GLH fastq reads ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF101BKK 1909822580 Michael Snyder, Stanford a7e506d2e5cf10e91ae561f1237c7c22 SRA:SRR6213093 https://www.encodeproject.org/files/ENCFF337GLH/@@download/ENCFF337GLH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF101BKK fastq reads ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF337GLH 1951675686 Michael Snyder, Stanford 6fc1d24339b45073df36bf0fe0688602 SRA:SRR6213093 https://www.encodeproject.org/files/ENCFF101BKK/@@download/ENCFF101BKK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF581VNX bam unfiltered alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF101BKK, ENCFF337GLH, ENCFF643CGH 4362442213 ENCODE Processing Pipeline 8796b957c9ca81d0600391103c9c0138 https://www.encodeproject.org/files/ENCFF581VNX/@@download/ENCFF581VNX.bam GRCh38 released borderline replicate concordance ENCFF685TND bam unfiltered alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF032ITP, ENCFF615YKQ, ENCFF643CGH 4270865575 ENCODE Processing Pipeline d439bf1a4df907d9264b27eb007a7903 https://www.encodeproject.org/files/ENCFF685TND/@@download/ENCFF685TND.bam GRCh38 released borderline replicate concordance ENCFF856DQD bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF101BKK, ENCFF337GLH, ENCFF643CGH 3710788891 ENCODE Processing Pipeline af962b02dd8d9bc2b550fad4d0accba9 https://www.encodeproject.org/files/ENCFF856DQD/@@download/ENCFF856DQD.bam GRCh38 released borderline replicate concordance ENCFF435DMH bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF032ITP, ENCFF615YKQ, ENCFF643CGH 3635487820 ENCODE Processing Pipeline 3fb43adcb01863be1ad9b2f3dbc0ce0a https://www.encodeproject.org/files/ENCFF435DMH/@@download/ENCFF435DMH.bam GRCh38 released borderline replicate concordance ENCFF318NQV bigWig signal p-value ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF856DQD 1024954024 ENCODE Processing Pipeline dff1b7c2e2040bcc7587ed8412568871 https://www.encodeproject.org/files/ENCFF318NQV/@@download/ENCFF318NQV.bigWig GRCh38 released borderline replicate concordance ENCFF236WDB bigWig signal p-value ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF435DMH 1067510853 ENCODE Processing Pipeline 4ab22f44bc1779737afa21347ab139fa https://www.encodeproject.org/files/ENCFF236WDB/@@download/ENCFF236WDB.bigWig GRCh38 released borderline replicate concordance ENCFF044BCR bigBed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF104VYR 11118647 ENCODE Processing Pipeline d42522c0c671a8e6f899a4d609549177 https://www.encodeproject.org/files/ENCFF044BCR/@@download/ENCFF044BCR.bigBed GRCh38 released borderline replicate concordance ENCFF236NFJ bigBed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF706QKF 11029660 ENCODE Processing Pipeline d151a351a10a2fe01f3a09fe6f008206 https://www.encodeproject.org/files/ENCFF236NFJ/@@download/ENCFF236NFJ.bigBed GRCh38 released borderline replicate concordance ENCFF968EQI bigBed narrowPeak conservative idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF851TCR 111759 ENCODE Processing Pipeline 524603bc787d21d382acfb08de872321 https://www.encodeproject.org/files/ENCFF968EQI/@@download/ENCFF968EQI.bigBed GRCh38 released borderline replicate concordance ENCFF002YZE bigWig signal p-value ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF435DMH, ENCFF856DQD 1531314534 ENCODE Processing Pipeline 8dc6c6845d4b7028c48dcd6a687d4cb0 https://www.encodeproject.org/files/ENCFF002YZE/@@download/ENCFF002YZE.bigWig GRCh38 released borderline replicate concordance ENCFF170KEK bigWig fold change over control ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF856DQD 982890078 ENCODE Processing Pipeline a2cdbe1419eced67da461c3d3712a10b https://www.encodeproject.org/files/ENCFF170KEK/@@download/ENCFF170KEK.bigWig GRCh38 released borderline replicate concordance ENCFF462ZBD bigWig fold change over control ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF435DMH 994013655 ENCODE Processing Pipeline dab8c156139e52411959b7379e209c54 https://www.encodeproject.org/files/ENCFF462ZBD/@@download/ENCFF462ZBD.bigWig GRCh38 released borderline replicate concordance ENCFF898MHN bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF856DQD 5820582 ENCODE Processing Pipeline efae17722a9e61dd51486959cd6ff558 https://www.encodeproject.org/files/ENCFF898MHN/@@download/ENCFF898MHN.bed.gz GRCh38 released borderline replicate concordance ENCFF706QKF bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF435DMH, ENCFF856DQD 6959260 ENCODE Processing Pipeline bfcd0dfe43abfae85cdf6db1d139e817 https://www.encodeproject.org/files/ENCFF706QKF/@@download/ENCFF706QKF.bed.gz GRCh38 released borderline replicate concordance ENCFF186VXN bigWig fold change over control ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF435DMH, ENCFF856DQD 1912381465 ENCODE Processing Pipeline 59fb1782df14badd586c9effa1539b09 https://www.encodeproject.org/files/ENCFF186VXN/@@download/ENCFF186VXN.bigWig GRCh38 released borderline replicate concordance ENCFF740OSJ bigBed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF898MHN 11147175 ENCODE Processing Pipeline 6fa31ef46ef07e3cb7ae3e1fa6842ad7 https://www.encodeproject.org/files/ENCFF740OSJ/@@download/ENCFF740OSJ.bigBed GRCh38 released borderline replicate concordance ENCFF851TCR bed narrowPeak conservative idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF104VYR, ENCFF419RSJ, ENCFF706QKF, ENCFF898MHN 17796 ENCODE Processing Pipeline 38055cf1d66e872f768882400e07b443 https://www.encodeproject.org/files/ENCFF851TCR/@@download/ENCFF851TCR.bed.gz GRCh38 released borderline replicate concordance ENCFF589MVU bed narrowPeak optimal idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF104VYR, ENCFF419RSJ, ENCFF706QKF, ENCFF898MHN 35360 ENCODE Processing Pipeline eced24540cb10a99c06146fd1e066581 https://www.encodeproject.org/files/ENCFF589MVU/@@download/ENCFF589MVU.bed.gz GRCh38 released borderline replicate concordance ENCFF374HME bigBed narrowPeak optimal idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF589MVU 133886 ENCODE Processing Pipeline 369e4c663eadd9f8df6bbd8e61a97852 https://www.encodeproject.org/files/ENCFF374HME/@@download/ENCFF374HME.bigBed GRCh38 released borderline replicate concordance ENCFF104VYR bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF435DMH 5813896 ENCODE Processing Pipeline 46a18db156de93412d37328a1fa4baae https://www.encodeproject.org/files/ENCFF104VYR/@@download/ENCFF104VYR.bed.gz GRCh38 released borderline replicate concordance ENCFF990ZGX bam unfiltered alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF101BKK, ENCFF337GLH, ENCFF807MUK 4353239557 ENCODE Processing Pipeline 526a78d94885c4dd6cf425c3f4f2004f https://www.encodeproject.org/files/ENCFF990ZGX/@@download/ENCFF990ZGX.bam hg19 released borderline replicate concordance ENCFF946PVY bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF032ITP, ENCFF615YKQ, ENCFF807MUK 3630942149 ENCODE Processing Pipeline e17f0c513e3f394e13e0018ee93eee58 https://www.encodeproject.org/files/ENCFF946PVY/@@download/ENCFF946PVY.bam hg19 released borderline replicate concordance ENCFF494TFN bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF101BKK, ENCFF337GLH, ENCFF807MUK 3706133502 ENCODE Processing Pipeline 90e4ffe550e7c6e95907b938e3f36212 https://www.encodeproject.org/files/ENCFF494TFN/@@download/ENCFF494TFN.bam hg19 released borderline replicate concordance ENCFF921UJY bam unfiltered alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF032ITP, ENCFF615YKQ, ENCFF807MUK 4261581517 ENCODE Processing Pipeline 03ec42eafdc48a1e1ac85048032dd94a https://www.encodeproject.org/files/ENCFF921UJY/@@download/ENCFF921UJY.bam hg19 released borderline replicate concordance ENCFF070RBR bigWig fold change over control ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF946PVY 1003159973 ENCODE Processing Pipeline 1a303d8ea9e1f6aba6f5d46660f5a428 https://www.encodeproject.org/files/ENCFF070RBR/@@download/ENCFF070RBR.bigWig hg19 released borderline replicate concordance ENCFF178SOL bigWig fold change over control ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF494TFN, ENCFF583FAG, ENCFF946PVY 1907469685 ENCODE Processing Pipeline 8a51a0f2f5acb703277ffb8717d9c383 https://www.encodeproject.org/files/ENCFF178SOL/@@download/ENCFF178SOL.bigWig hg19 released borderline replicate concordance ENCFF316UXN bigBed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF008QTZ 11008870 ENCODE Processing Pipeline 55009807b1523a8efc5bdfeb1b50eb5f https://www.encodeproject.org/files/ENCFF316UXN/@@download/ENCFF316UXN.bigBed hg19 released borderline replicate concordance ENCFF066FVC bigWig signal p-value ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF494TFN, ENCFF583FAG 840202313 ENCODE Processing Pipeline 798431c725c444bab63111706e3b900b https://www.encodeproject.org/files/ENCFF066FVC/@@download/ENCFF066FVC.bigWig hg19 released borderline replicate concordance ENCFF360QVF bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF494TFN, ENCFF583FAG 5815308 ENCODE Processing Pipeline 6f5b3be04626f091df23d7f8e0baa47b https://www.encodeproject.org/files/ENCFF360QVF/@@download/ENCFF360QVF.bed.gz hg19 released borderline replicate concordance ENCFF288MEP bigWig signal p-value ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF946PVY 860673639 ENCODE Processing Pipeline 7b3a73526cf08fd70f794101dc0f19df https://www.encodeproject.org/files/ENCFF288MEP/@@download/ENCFF288MEP.bigWig hg19 released borderline replicate concordance ENCFF344BMD bigWig signal p-value ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF494TFN, ENCFF583FAG, ENCFF946PVY 1836278952 ENCODE Processing Pipeline d9f2a64744b786068c3ab63ae0503297 https://www.encodeproject.org/files/ENCFF344BMD/@@download/ENCFF344BMD.bigWig hg19 released borderline replicate concordance ENCFF837RNB bigWig fold change over control ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF494TFN, ENCFF583FAG 981598833 ENCODE Processing Pipeline b16ae0120719035e54598f98c58c5ff1 https://www.encodeproject.org/files/ENCFF837RNB/@@download/ENCFF837RNB.bigWig hg19 released borderline replicate concordance ENCFF097ZJV bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF946PVY 5804488 ENCODE Processing Pipeline 472bf00f4b6a3a1d2536282b1e5bf66c https://www.encodeproject.org/files/ENCFF097ZJV/@@download/ENCFF097ZJV.bed.gz hg19 released borderline replicate concordance ENCFF008QTZ bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF494TFN, ENCFF583FAG, ENCFF946PVY 6947619 ENCODE Processing Pipeline a2575d06ac57ff5580ec82d610dac67e https://www.encodeproject.org/files/ENCFF008QTZ/@@download/ENCFF008QTZ.bed.gz hg19 released borderline replicate concordance ENCFF369JPM bigBed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF360QVF 11125639 ENCODE Processing Pipeline 55218fdd887fb654130a8d54c9246dc9 https://www.encodeproject.org/files/ENCFF369JPM/@@download/ENCFF369JPM.bigBed hg19 released borderline replicate concordance ENCFF227AGW bigBed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF097ZJV 11100121 ENCODE Processing Pipeline 5f91e69c367987668ad1efef9f911d6d https://www.encodeproject.org/files/ENCFF227AGW/@@download/ENCFF227AGW.bigBed hg19 released borderline replicate concordance ENCFF965CMV bed narrowPeak conservative idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF008QTZ, ENCFF097ZJV, ENCFF360QVF 15693 ENCODE Processing Pipeline c9a5c6eb0facb01a6cf29edd76f401e5 https://www.encodeproject.org/files/ENCFF965CMV/@@download/ENCFF965CMV.bed.gz hg19 released borderline replicate concordance ENCFF055ONX bigBed narrowPeak conservative idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF965CMV 92613 ENCODE Processing Pipeline 2d36c59fb8204f0da71738d9a1d37f3b https://www.encodeproject.org/files/ENCFF055ONX/@@download/ENCFF055ONX.bigBed hg19 released borderline replicate concordance ENCFF603AWL bed narrowPeak optimal idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF008QTZ, ENCFF097ZJV, ENCFF360QVF 34361 ENCODE Processing Pipeline 9b250d30b8a2387c51eaf1945644eb53 https://www.encodeproject.org/files/ENCFF603AWL/@@download/ENCFF603AWL.bed.gz hg19 released borderline replicate concordance ENCFF270MBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF603AWL 129379 ENCODE Processing Pipeline 08d1977e8bf1b9fac74498eb1eb2d269 https://www.encodeproject.org/files/ENCFF270MBQ/@@download/ENCFF270MBQ.bigBed hg19 released borderline replicate concordance ENCFF708HJS fastq reads ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF999SJJ 2636895729 Michael Snyder, Stanford 257677a21bc9e15adad3c3c1dd30ef1e SRA:SRR6213659 https://www.encodeproject.org/files/ENCFF708HJS/@@download/ENCFF708HJS.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF990OIS fastq reads ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF419HBK 2886673300 Michael Snyder, Stanford 31057620475a4462cb7cd130a09bc110 SRA:SRR6213660 https://www.encodeproject.org/files/ENCFF990OIS/@@download/ENCFF990OIS.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF419HBK fastq reads ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF990OIS 3565367864 Michael Snyder, Stanford 9c5a92ad3a3f760084ad01f8f0b33cea SRA:SRR6213660 https://www.encodeproject.org/files/ENCFF419HBK/@@download/ENCFF419HBK.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF999SJJ fastq reads ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF708HJS 3203422218 Michael Snyder, Stanford 3d13000641c1d0f59e82a3898b308f63 SRA:SRR6213659 https://www.encodeproject.org/files/ENCFF999SJJ/@@download/ENCFF999SJJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF618TAU bam unfiltered alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF708HJS, ENCFF807MUK, ENCFF999SJJ 5819057452 ENCODE Processing Pipeline 508ed39c2a0c5e0e1b11d987ba8d3b9a https://www.encodeproject.org/files/ENCFF618TAU/@@download/ENCFF618TAU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF357QOI bam unfiltered alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF419HBK, ENCFF643CGH, ENCFF990OIS 6437878813 ENCODE Processing Pipeline 177e0bf0ee4504fe9df76a415fd56105 https://www.encodeproject.org/files/ENCFF357QOI/@@download/ENCFF357QOI.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF778CER bam unfiltered alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF643CGH, ENCFF708HJS, ENCFF999SJJ 5829860615 ENCODE Processing Pipeline 581deb7baa76583914abb397067d6796 https://www.encodeproject.org/files/ENCFF778CER/@@download/ENCFF778CER.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF364IYE bam unfiltered alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF419HBK, ENCFF807MUK, ENCFF990OIS 6425845341 ENCODE Processing Pipeline 10fc5077bf70f3a10743bf7e94573f1b https://www.encodeproject.org/files/ENCFF364IYE/@@download/ENCFF364IYE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF563SWH bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF419HBK, ENCFF643CGH, ENCFF990OIS 5147957466 ENCODE Processing Pipeline cbe75e127ff2dc3f3cbb9b28720b23db https://www.encodeproject.org/files/ENCFF563SWH/@@download/ENCFF563SWH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF498ZBS bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF708HJS, ENCFF807MUK, ENCFF999SJJ 4711400523 ENCODE Processing Pipeline 9d346b6b3bd33bad2d58a082e9dcd40d https://www.encodeproject.org/files/ENCFF498ZBS/@@download/ENCFF498ZBS.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF371KSC bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF643CGH, ENCFF708HJS, ENCFF999SJJ 4714331675 ENCODE Processing Pipeline 0bfdc4fdfde2cff633a6e8df4cba78d6 https://www.encodeproject.org/files/ENCFF371KSC/@@download/ENCFF371KSC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF074HXU bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF419HBK, ENCFF807MUK, ENCFF990OIS 5142018005 ENCODE Processing Pipeline 19d9c3307100892493b262483d4a1572 https://www.encodeproject.org/files/ENCFF074HXU/@@download/ENCFF074HXU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF117KLO bigWig signal p-value ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF074HXU, ENCFF182WHU 1486916261 ENCODE Processing Pipeline c77b990348a7e28962f095e663ac6671 https://www.encodeproject.org/files/ENCFF117KLO/@@download/ENCFF117KLO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF588AST bigWig signal p-value ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF371KSC, ENCFF810LLR 1648643452 ENCODE Processing Pipeline 04894ffceee5e582a6d87b99d31cff40 https://www.encodeproject.org/files/ENCFF588AST/@@download/ENCFF588AST.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF116XSM bigWig signal p-value ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF371KSC, ENCFF563SWH, ENCFF810LLR 1943119255 ENCODE Processing Pipeline f0293d162fd2c2a00a4d4d50eb08849c https://www.encodeproject.org/files/ENCFF116XSM/@@download/ENCFF116XSM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF344GVS bigWig signal p-value ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF563SWH, ENCFF810LLR 1381752105 ENCODE Processing Pipeline 72a4e3d0c77465ff36a32df963b8c0d8 https://www.encodeproject.org/files/ENCFF344GVS/@@download/ENCFF344GVS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF172GTO bigWig signal p-value ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF074HXU, ENCFF182WHU, ENCFF498ZBS 1910403123 ENCODE Processing Pipeline e6f3ab45375aa1d9805f147e4be99b81 https://www.encodeproject.org/files/ENCFF172GTO/@@download/ENCFF172GTO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF432VUD bigWig signal p-value ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF498ZBS 1668816856 ENCODE Processing Pipeline d97f67721a60e493e75a98ff36070273 https://www.encodeproject.org/files/ENCFF432VUD/@@download/ENCFF432VUD.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF166EVQ bigWig fold change over control ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF371KSC, ENCFF810LLR 1665995888 ENCODE Processing Pipeline b0338c8869a6aa6f02b70d42a0a64dc1 https://www.encodeproject.org/files/ENCFF166EVQ/@@download/ENCFF166EVQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF799CVQ bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF563SWH, ENCFF810LLR 6665768 ENCODE Processing Pipeline 0fd331281ce522b68a83c50ec1a2e4f7 https://www.encodeproject.org/files/ENCFF799CVQ/@@download/ENCFF799CVQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF296JCG bigWig fold change over control ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF498ZBS 1696851713 ENCODE Processing Pipeline 9937d62b5af173a2a6d60a65743e5968 https://www.encodeproject.org/files/ENCFF296JCG/@@download/ENCFF296JCG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF729TIO bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF074HXU, ENCFF182WHU 6660403 ENCODE Processing Pipeline ee067f4661ccc7d3613c79a53c464ac7 https://www.encodeproject.org/files/ENCFF729TIO/@@download/ENCFF729TIO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF312IMW bigWig fold change over control ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF371KSC, ENCFF563SWH, ENCFF810LLR 2325812735 ENCODE Processing Pipeline edf949624351046c246006bb3bbfe2e9 https://www.encodeproject.org/files/ENCFF312IMW/@@download/ENCFF312IMW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF062BFC bigWig fold change over control ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF074HXU, ENCFF182WHU, ENCFF498ZBS 2288474647 ENCODE Processing Pipeline a85c31abf96af844e75757d50ef91f62 https://www.encodeproject.org/files/ENCFF062BFC/@@download/ENCFF062BFC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF653WOY bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF371KSC, ENCFF563SWH, ENCFF810LLR 7279384 ENCODE Processing Pipeline a78c9b293f13840140d4b13b8bf9523c https://www.encodeproject.org/files/ENCFF653WOY/@@download/ENCFF653WOY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF929SQS bigWig fold change over control ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF563SWH, ENCFF810LLR 1708027803 ENCODE Processing Pipeline a81ba998d7b5129d89d2484fe8e7d407 https://www.encodeproject.org/files/ENCFF929SQS/@@download/ENCFF929SQS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF837DBK bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF371KSC, ENCFF810LLR 6712945 ENCODE Processing Pipeline e526f038e94f97ac50d3eb7725356421 https://www.encodeproject.org/files/ENCFF837DBK/@@download/ENCFF837DBK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF217DOP bigBed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF799CVQ 11065482 ENCODE Processing Pipeline 8164a67524787102c93154dd0013abda https://www.encodeproject.org/files/ENCFF217DOP/@@download/ENCFF217DOP.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF477JPH bigBed narrowPeak optimal idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF958TTM 88738 ENCODE Processing Pipeline 4ece734bebd0e84a8bd309bfe44700fb https://www.encodeproject.org/files/ENCFF477JPH/@@download/ENCFF477JPH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF010NQC bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF074HXU, ENCFF182WHU, ENCFF498ZBS 7254058 ENCODE Processing Pipeline cacb03a9c30fd009a5cee1e5cdc7f221 https://www.encodeproject.org/files/ENCFF010NQC/@@download/ENCFF010NQC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF643KJB bigWig fold change over control ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF074HXU, ENCFF182WHU 1705143862 ENCODE Processing Pipeline f35676c2abab296e59e7c4b40821fa37 https://www.encodeproject.org/files/ENCFF643KJB/@@download/ENCFF643KJB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF633JFK bed narrowPeak conservative idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF653WOY, ENCFF799CVQ, ENCFF837DBK 9400 ENCODE Processing Pipeline f861938b79a001a49bb8490c268dec92 https://www.encodeproject.org/files/ENCFF633JFK/@@download/ENCFF633JFK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF958TTM bed narrowPeak optimal idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF653WOY, ENCFF799CVQ, ENCFF837DBK 20436 ENCODE Processing Pipeline 94957788cbd9dfff084ab128644c087e https://www.encodeproject.org/files/ENCFF958TTM/@@download/ENCFF958TTM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF142TSD bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF498ZBS 6709068 ENCODE Processing Pipeline 3e77296d12b4d227c42c94792b734e8c https://www.encodeproject.org/files/ENCFF142TSD/@@download/ENCFF142TSD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF857FHI bigBed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF837DBK 11040521 ENCODE Processing Pipeline 34d02a65bb93e5ead16601b182c89442 https://www.encodeproject.org/files/ENCFF857FHI/@@download/ENCFF857FHI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF112RPI bigBed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF653WOY 11249494 ENCODE Processing Pipeline e37b630b247fd8f7c662df80db01de9a https://www.encodeproject.org/files/ENCFF112RPI/@@download/ENCFF112RPI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF355YGD bigBed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF142TSD 11024894 ENCODE Processing Pipeline 9dd722a6bebb62855402907029db05d8 https://www.encodeproject.org/files/ENCFF355YGD/@@download/ENCFF355YGD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF683WPE bigBed narrowPeak optimal idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF267STV 85129 ENCODE Processing Pipeline 882ca0d36d0f7239c8af0f14a27b8305 https://www.encodeproject.org/files/ENCFF683WPE/@@download/ENCFF683WPE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF117MPH bigBed narrowPeak conservative idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF633JFK 69858 ENCODE Processing Pipeline e57a03e23dc48f7ec150c8200f46b38b https://www.encodeproject.org/files/ENCFF117MPH/@@download/ENCFF117MPH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF343UKK bigBed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF729TIO 11042483 ENCODE Processing Pipeline 2cebce51e5352273327d9a1a9ad4a58f https://www.encodeproject.org/files/ENCFF343UKK/@@download/ENCFF343UKK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF458AUD bed narrowPeak conservative idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF010NQC, ENCFF142TSD, ENCFF729TIO 8833 ENCODE Processing Pipeline 9f400a3f1d83fdb7e7f420ce4c0bfcd0 https://www.encodeproject.org/files/ENCFF458AUD/@@download/ENCFF458AUD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF687AVP bigBed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF010NQC 11232259 ENCODE Processing Pipeline 353c0c21159b54d4cf50e031a83afe03 https://www.encodeproject.org/files/ENCFF687AVP/@@download/ENCFF687AVP.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF060OCG bigBed narrowPeak conservative idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF458AUD 57512 ENCODE Processing Pipeline a0a2a1b557debd6da9d02884e16e76ad https://www.encodeproject.org/files/ENCFF060OCG/@@download/ENCFF060OCG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF267STV bed narrowPeak optimal idr thresholded peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF010NQC, ENCFF142TSD, ENCFF729TIO 19560 ENCODE Processing Pipeline b2c997feb77125e003fd0cdb418b8d3c https://www.encodeproject.org/files/ENCFF267STV/@@download/ENCFF267STV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF476SSR bam unfiltered alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF383GMF, ENCFF441GEH, ENCFF807MUK 4438655750 ENCODE Processing Pipeline 38707f6cb2f79a7f504a024430a0a942 https://www.encodeproject.org/files/ENCFF476SSR/@@download/ENCFF476SSR.bam hg19 released low read depth ENCFF496RYT bam unfiltered alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF097VAH, ENCFF795LQA, ENCFF807MUK 3570569051 ENCODE Processing Pipeline 95d9028112504d233375b961d71f2fc7 https://www.encodeproject.org/files/ENCFF496RYT/@@download/ENCFF496RYT.bam hg19 released low read depth ENCFF795LQA fastq reads ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF097VAH 1601634914 Michael Snyder, Stanford 7f81e4271bd8adbf985dba5af3ddedcc SRA:SRR5111404 https://www.encodeproject.org/files/ENCFF795LQA/@@download/ENCFF795LQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF097VAH fastq reads ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF795LQA 1603221421 Michael Snyder, Stanford 3fea425fad2176632a9bbb1d1cd36b77 SRA:SRR5111404 https://www.encodeproject.org/files/ENCFF097VAH/@@download/ENCFF097VAH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF383GMF fastq reads ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF441GEH 1982535214 Michael Snyder, Stanford e4c42d10cd05a03ac70f247189a41c8d SRA:SRR5111405 https://www.encodeproject.org/files/ENCFF383GMF/@@download/ENCFF383GMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF441GEH fastq reads ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF383GMF 2055954680 Michael Snyder, Stanford cb95c3992bd23be4a15bebbedc6aa93a SRA:SRR5111405 https://www.encodeproject.org/files/ENCFF441GEH/@@download/ENCFF441GEH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF073XZO bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF383GMF, ENCFF441GEH, ENCFF807MUK 3831769480 ENCODE Processing Pipeline b6999d7a7f1325c15799c19ed8f534a5 https://www.encodeproject.org/files/ENCFF073XZO/@@download/ENCFF073XZO.bam hg19 released low read depth ENCFF135OYM bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF097VAH, ENCFF795LQA, ENCFF807MUK 3006991865 ENCODE Processing Pipeline 07c6a4530d68b7c42e369b8ee32a46a1 https://www.encodeproject.org/files/ENCFF135OYM/@@download/ENCFF135OYM.bam hg19 released low read depth ENCFF543HMP bigWig signal p-value ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF135OYM, ENCFF581ZJL 1071679234 ENCODE Processing Pipeline 9bf5efda59603d5b0425d3b07118202c https://www.encodeproject.org/files/ENCFF543HMP/@@download/ENCFF543HMP.bigWig hg19 released low read depth ENCFF601NQQ bigWig signal p-value ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF073XZO 979502758 ENCODE Processing Pipeline ac59a7ac7e16d7abec14f9692575cd54 https://www.encodeproject.org/files/ENCFF601NQQ/@@download/ENCFF601NQQ.bigWig hg19 released low read depth ENCFF298WCQ bigWig fold change over control ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF135OYM, ENCFF581ZJL 964659501 ENCODE Processing Pipeline 7f81d78ee370036055782c57d5a41b3e https://www.encodeproject.org/files/ENCFF298WCQ/@@download/ENCFF298WCQ.bigWig hg19 released low read depth ENCFF568MDW bigWig signal p-value ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF073XZO, ENCFF135OYM, ENCFF581ZJL 1614255786 ENCODE Processing Pipeline c2594c7216a80f3b9d053e1e78d22544 https://www.encodeproject.org/files/ENCFF568MDW/@@download/ENCFF568MDW.bigWig hg19 released low read depth ENCFF745QWA bigWig fold change over control ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF073XZO 1068856226 ENCODE Processing Pipeline 7598b50a335cbeded3ffaa7239e90be6 https://www.encodeproject.org/files/ENCFF745QWA/@@download/ENCFF745QWA.bigWig hg19 released low read depth ENCFF852WRN bigWig fold change over control ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF073XZO, ENCFF135OYM, ENCFF581ZJL 1908245620 ENCODE Processing Pipeline 625fa8075f47bfc90bbd8648ca203ed7 https://www.encodeproject.org/files/ENCFF852WRN/@@download/ENCFF852WRN.bigWig hg19 released low read depth ENCFF203SUN bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF073XZO 6769212 ENCODE Processing Pipeline 23d5725b84132909e80e5661417b18a3 https://www.encodeproject.org/files/ENCFF203SUN/@@download/ENCFF203SUN.bed.gz hg19 released low read depth ENCFF037YFB bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF135OYM, ENCFF581ZJL 6453786 ENCODE Processing Pipeline 8f2d9cef390dd17b72020147d0bd37c5 https://www.encodeproject.org/files/ENCFF037YFB/@@download/ENCFF037YFB.bed.gz hg19 released low read depth ENCFF732HYH bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF073XZO, ENCFF135OYM, ENCFF581ZJL 7124871 ENCODE Processing Pipeline 3ef725c04659439dcfb40c8b0e4b2113 https://www.encodeproject.org/files/ENCFF732HYH/@@download/ENCFF732HYH.bed.gz hg19 released low read depth ENCFF931VRM bigBed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF732HYH 13084716 ENCODE Processing Pipeline 22308960436b9deb7d6bc60c8afdf3ea https://www.encodeproject.org/files/ENCFF931VRM/@@download/ENCFF931VRM.bigBed hg19 released low read depth ENCFF538PNG bigBed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF203SUN 13279688 ENCODE Processing Pipeline 290faa7e20261910828351562c96115d https://www.encodeproject.org/files/ENCFF538PNG/@@download/ENCFF538PNG.bigBed hg19 released low read depth ENCFF825HMZ bigBed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF037YFB 13361371 ENCODE Processing Pipeline 20e8443421cb1ab51492eb6cb99d0e4c https://www.encodeproject.org/files/ENCFF825HMZ/@@download/ENCFF825HMZ.bigBed hg19 released low read depth ENCFF919HNS bam unfiltered alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF097VAH, ENCFF643CGH, ENCFF795LQA 3574337465 ENCODE Processing Pipeline d7b6407be161f8cc1860ee898260a758 https://www.encodeproject.org/files/ENCFF919HNS/@@download/ENCFF919HNS.bam GRCh38 released low read depth ENCFF172BUN bam unfiltered alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF383GMF, ENCFF441GEH, ENCFF643CGH 4443513322 ENCODE Processing Pipeline 5fc95c4ac3fd83bc62c1c9da93f69ca8 https://www.encodeproject.org/files/ENCFF172BUN/@@download/ENCFF172BUN.bam GRCh38 released low read depth ENCFF703CKR bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF097VAH, ENCFF643CGH, ENCFF795LQA 3008581364 ENCODE Processing Pipeline 434023a8f536d7feed790a4c221b3679 https://www.encodeproject.org/files/ENCFF703CKR/@@download/ENCFF703CKR.bam GRCh38 released low read depth ENCFF931HHQ bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF383GMF, ENCFF441GEH, ENCFF643CGH 3834523294 ENCODE Processing Pipeline 559953405d7c051abc3cce0d2effb650 https://www.encodeproject.org/files/ENCFF931HHQ/@@download/ENCFF931HHQ.bam GRCh38 released low read depth ENCFF094CBK bigWig signal p-value ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF703CKR, ENCFF910IKB 1047515139 ENCODE Processing Pipeline 7eeca1f80d0936b41e46ba0eb915dc3b https://www.encodeproject.org/files/ENCFF094CBK/@@download/ENCFF094CBK.bigWig GRCh38 released low read depth ENCFF175DQJ bigWig signal p-value ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF931HHQ 1002065215 ENCODE Processing Pipeline ba678450f674dc48c9e22a366870f303 https://www.encodeproject.org/files/ENCFF175DQJ/@@download/ENCFF175DQJ.bigWig GRCh38 released low read depth ENCFF052XNM bigWig signal p-value ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF703CKR, ENCFF910IKB, ENCFF931HHQ 1675809848 ENCODE Processing Pipeline 9fcf1e2738d5e5085ce82dba5eba2350 https://www.encodeproject.org/files/ENCFF052XNM/@@download/ENCFF052XNM.bigWig GRCh38 released low read depth ENCFF403LBT bigWig fold change over control ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF703CKR, ENCFF910IKB 964082251 ENCODE Processing Pipeline f0419a817fe46ab735125d5813c966c0 https://www.encodeproject.org/files/ENCFF403LBT/@@download/ENCFF403LBT.bigWig GRCh38 released low read depth ENCFF555QQD bigWig fold change over control ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF931HHQ 1069281258 ENCODE Processing Pipeline ae5b4e3e7d21046887b7f4f4de4865a0 https://www.encodeproject.org/files/ENCFF555QQD/@@download/ENCFF555QQD.bigWig GRCh38 released low read depth ENCFF648RXN bigWig fold change over control ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF703CKR, ENCFF910IKB, ENCFF931HHQ 1952750606 ENCODE Processing Pipeline a2ac3b285a41fa8666c76a111b260b56 https://www.encodeproject.org/files/ENCFF648RXN/@@download/ENCFF648RXN.bigWig GRCh38 released low read depth ENCFF491ELB bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF931HHQ 6648837 ENCODE Processing Pipeline c91f4f0afc2a3634203ae9858c4fa288 https://www.encodeproject.org/files/ENCFF491ELB/@@download/ENCFF491ELB.bed.gz GRCh38 released low read depth ENCFF754RKE bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF703CKR, ENCFF910IKB, ENCFF931HHQ 7175534 ENCODE Processing Pipeline 5542a6f954d9927d2385f3c1c24f60dd https://www.encodeproject.org/files/ENCFF754RKE/@@download/ENCFF754RKE.bed.gz GRCh38 released low read depth ENCFF373LNE bigBed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF491ELB 13270367 ENCODE Processing Pipeline 73cde894cf93b2bd76f335d898b278b3 https://www.encodeproject.org/files/ENCFF373LNE/@@download/ENCFF373LNE.bigBed GRCh38 released low read depth ENCFF817NFR bigBed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF754RKE 13183228 ENCODE Processing Pipeline 2106335b9764ac4e19af478da9aeb859 https://www.encodeproject.org/files/ENCFF817NFR/@@download/ENCFF817NFR.bigBed GRCh38 released low read depth ENCFF066CWG bed narrowPeak optimal idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF491ELB, ENCFF621LTB, ENCFF754RKE 416652 ENCODE Processing Pipeline e5b124183cfc87b447bf46aeec688b49 https://www.encodeproject.org/files/ENCFF066CWG/@@download/ENCFF066CWG.bed.gz GRCh38 released low read depth ENCFF621LTB bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF703CKR, ENCFF910IKB 6311330 ENCODE Processing Pipeline 9c0e0fa9325b5b66f6777ec47fa2ce38 https://www.encodeproject.org/files/ENCFF621LTB/@@download/ENCFF621LTB.bed.gz GRCh38 released low read depth ENCFF802WID bigBed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF621LTB 13340145 ENCODE Processing Pipeline 33778ca103267785851b1a9b31e00af0 https://www.encodeproject.org/files/ENCFF802WID/@@download/ENCFF802WID.bigBed GRCh38 released low read depth ENCFF154SRU bed narrowPeak conservative idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF491ELB, ENCFF621LTB, ENCFF754RKE 329078 ENCODE Processing Pipeline da971323006e67aad36b282e569f788b https://www.encodeproject.org/files/ENCFF154SRU/@@download/ENCFF154SRU.bed.gz GRCh38 released low read depth ENCFF406NUR bigBed narrowPeak conservative idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF154SRU 726865 ENCODE Processing Pipeline 842c93261f65c821df478f0b72709e32 https://www.encodeproject.org/files/ENCFF406NUR/@@download/ENCFF406NUR.bigBed GRCh38 released low read depth ENCFF039LQD bigBed narrowPeak optimal idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF066CWG 864411 ENCODE Processing Pipeline 70bc466febb75460985ea2305c8e24fd https://www.encodeproject.org/files/ENCFF039LQD/@@download/ENCFF039LQD.bigBed GRCh38 released low read depth ENCFF548MLJ bigBed narrowPeak conservative idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF540IYS 521251 ENCODE Processing Pipeline c5948002d721eaefc35fe93d0c0fb289 https://www.encodeproject.org/files/ENCFF548MLJ/@@download/ENCFF548MLJ.bigBed hg19 released low read depth ENCFF540IYS bed narrowPeak conservative idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF037YFB, ENCFF203SUN, ENCFF732HYH 280128 ENCODE Processing Pipeline bbcf86dc31f22b419bcd6680ed3fb772 https://www.encodeproject.org/files/ENCFF540IYS/@@download/ENCFF540IYS.bed.gz hg19 released low read depth ENCFF248VHN bed narrowPeak optimal idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF037YFB, ENCFF203SUN, ENCFF732HYH 358492 ENCODE Processing Pipeline 6617b946d9b9a9e353cf71f681323126 https://www.encodeproject.org/files/ENCFF248VHN/@@download/ENCFF248VHN.bed.gz hg19 released low read depth ENCFF259WQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF248VHN 620191 ENCODE Processing Pipeline 4a4cfd3399a2846df65a4ff4234579b4 https://www.encodeproject.org/files/ENCFF259WQJ/@@download/ENCFF259WQJ.bigBed hg19 released low read depth ENCFF966BYU fastq reads ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF838NDW 2332027452 Michael Snyder, Stanford 4a5552586bb19cd545924410f67a129a SRA:SRR6213870 https://www.encodeproject.org/files/ENCFF966BYU/@@download/ENCFF966BYU.fastq.gz Illumina HiSeq 4000 /files/ENCFF104PIL/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF838NDW fastq reads ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF966BYU 2664177338 Michael Snyder, Stanford 7871eede65bcac4db708e38814804ed2 SRA:SRR6213870 https://www.encodeproject.org/files/ENCFF838NDW/@@download/ENCFF838NDW.fastq.gz Illumina HiSeq 4000 /files/ENCFF862OLB/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF137PWH bam unfiltered alignments ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF807MUK, ENCFF838NDW, ENCFF966BYU 4925729745 ENCODE Processing Pipeline e2b417e9e5964ea86f025cff450085c1 https://www.encodeproject.org/files/ENCFF137PWH/@@download/ENCFF137PWH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF990EXV bam alignments ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF807MUK, ENCFF838NDW, ENCFF966BYU 3818833666 ENCODE Processing Pipeline b509fbf0f5bb3e937de052d3153c4240 https://www.encodeproject.org/files/ENCFF990EXV/@@download/ENCFF990EXV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF447DVZ bam unfiltered alignments ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF838NDW, ENCFF966BYU 4933050839 ENCODE Processing Pipeline 14a50953a8388eb44952efcb985ec5b3 https://www.encodeproject.org/files/ENCFF447DVZ/@@download/ENCFF447DVZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF232BJL bam alignments ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF838NDW, ENCFF966BYU 3823253807 ENCODE Processing Pipeline 5afda3c03c701037be607adc986390c4 https://www.encodeproject.org/files/ENCFF232BJL/@@download/ENCFF232BJL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF679WVG bigWig signal p-value ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF561ZZE, ENCFF990EXV 1114787911 ENCODE Processing Pipeline 495e385d9124a331b204dcbda8e31cb2 https://www.encodeproject.org/files/ENCFF679WVG/@@download/ENCFF679WVG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF431OZO bigWig fold change over control ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF561ZZE, ENCFF990EXV 1294459737 ENCODE Processing Pipeline c12be464730fd7654f71cb2b57e83dfa https://www.encodeproject.org/files/ENCFF431OZO/@@download/ENCFF431OZO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF638SOR bigWig signal p-value ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF232BJL, ENCFF951HNT 1397070250 ENCODE Processing Pipeline 58c9fdef81f3e82a26b0b427d7cf50aa https://www.encodeproject.org/files/ENCFF638SOR/@@download/ENCFF638SOR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF146REQ bed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF561ZZE, ENCFF990EXV 6455685 ENCODE Processing Pipeline 8c21cf6410066a2c361f5eb7b13e2c69 https://www.encodeproject.org/files/ENCFF146REQ/@@download/ENCFF146REQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF772SZX bigBed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF146REQ 11472905 ENCODE Processing Pipeline 29649984aac710528804ee64808bf1ca https://www.encodeproject.org/files/ENCFF772SZX/@@download/ENCFF772SZX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF432XLE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF146REQ 443651 ENCODE Processing Pipeline 6871e52c9ac95a1732d9d852967f62b7 https://www.encodeproject.org/files/ENCFF432XLE/@@download/ENCFF432XLE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF187EOX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF432XLE 804039 ENCODE Processing Pipeline 35d25d49492fe7cdaddfc86f90cbb12b https://www.encodeproject.org/files/ENCFF187EOX/@@download/ENCFF187EOX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF686GDH bigWig fold change over control ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF232BJL, ENCFF951HNT 1301866746 ENCODE Processing Pipeline 921b81ef5ebae30dfdf69f741c724bc2 https://www.encodeproject.org/files/ENCFF686GDH/@@download/ENCFF686GDH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF300WML bed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF232BJL, ENCFF951HNT 6432939 ENCODE Processing Pipeline 1dc998c807543234db68bd2ab4cc4d3e https://www.encodeproject.org/files/ENCFF300WML/@@download/ENCFF300WML.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF982KVN bigBed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300WML 11457786 ENCODE Processing Pipeline cbf1d2b6e9b27626609c4554df82b218 https://www.encodeproject.org/files/ENCFF982KVN/@@download/ENCFF982KVN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF684CSF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF788RFY 785068 ENCODE Processing Pipeline 5a2f1a2a0b010a1f639844616b980b69 https://www.encodeproject.org/files/ENCFF684CSF/@@download/ENCFF684CSF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF788RFY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300WML, ENCFF419RSJ 426981 ENCODE Processing Pipeline 2f9020585531b5ccd6816b5a4f22a56c https://www.encodeproject.org/files/ENCFF788RFY/@@download/ENCFF788RFY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF212WPN bam unfiltered alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 50 ENCFF193ROJ, ENCFF807MUK 1311237717 ENCODE Processing Pipeline 9e30586d2ac9e759e35042b50a79acfb https://www.encodeproject.org/files/ENCFF212WPN/@@download/ENCFF212WPN.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF740PEG bam unfiltered alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 50 ENCFF163SRP, ENCFF807MUK 1681823717 ENCODE Processing Pipeline 212af17a1aaf138eab8445c3470c3d57 https://www.encodeproject.org/files/ENCFF740PEG/@@download/ENCFF740PEG.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF193ROJ fastq reads ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 1 50 single-ended 1202152198 Richard Myers, HAIB e567ea15f567f5ec692f484000ef31b9 SRA:SRR5338979 https://www.encodeproject.org/files/ENCFF193ROJ/@@download/ENCFF193ROJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF654JMO/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF163SRP fastq reads ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 1 50 single-ended 1587778011 Richard Myers, HAIB 97e80f67116433f1134124b0dc5901ef SRA:SRR5338978 https://www.encodeproject.org/files/ENCFF163SRP/@@download/ENCFF163SRP.fastq.gz Illumina HiSeq 2000 /files/ENCFF876NBT/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF170OKS bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 50 ENCFF193ROJ, ENCFF807MUK 981766307 ENCODE Processing Pipeline 385cc7c1135d98edc161dce0c455042b https://www.encodeproject.org/files/ENCFF170OKS/@@download/ENCFF170OKS.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF764QOG bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 50 ENCFF163SRP, ENCFF807MUK 1243310762 ENCODE Processing Pipeline 0d4dc63dcbc55967421626a20ce73cad https://www.encodeproject.org/files/ENCFF764QOG/@@download/ENCFF764QOG.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF201HCI bigWig signal p-value ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 989797023 ENCODE Processing Pipeline cc1f08c7ed9acd52465203ec544be416 https://www.encodeproject.org/files/ENCFF201HCI/@@download/ENCFF201HCI.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF164QZJ bigWig signal p-value ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF170OKS, ENCFF929OSU, ENCFF994YBV 845242860 ENCODE Processing Pipeline 93d15ab130b3a5369c69365b448e9917 https://www.encodeproject.org/files/ENCFF164QZJ/@@download/ENCFF164QZJ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF272PMU bigWig signal p-value ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF170OKS, ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 1083614524 ENCODE Processing Pipeline 5e9d7d963a40e2819b7d2d596cc6cf9a https://www.encodeproject.org/files/ENCFF272PMU/@@download/ENCFF272PMU.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF213XUO bigWig fold change over control ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 790032227 ENCODE Processing Pipeline 22d217d3307c3fcc00b93b2fbb98b82f https://www.encodeproject.org/files/ENCFF213XUO/@@download/ENCFF213XUO.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF077XSE bigWig fold change over control ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF170OKS, ENCFF929OSU, ENCFF994YBV 532069530 ENCODE Processing Pipeline 42e18eb26acea3e1c28c10b5abea5a9b https://www.encodeproject.org/files/ENCFF077XSE/@@download/ENCFF077XSE.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF208YII bigWig fold change over control ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF170OKS, ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 1104576926 ENCODE Processing Pipeline 7f66757fa02847dce9d98012b62a5fc1 https://www.encodeproject.org/files/ENCFF208YII/@@download/ENCFF208YII.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF535NWA bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 6324922 ENCODE Processing Pipeline 242eabd415c97eb62fbf4e139d9cbeb4 https://www.encodeproject.org/files/ENCFF535NWA/@@download/ENCFF535NWA.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF571MRI bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF170OKS, ENCFF929OSU, ENCFF994YBV 5938296 ENCODE Processing Pipeline 32e9b0c07560c1b1b9594be5438e31ae https://www.encodeproject.org/files/ENCFF571MRI/@@download/ENCFF571MRI.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF899MNG bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF170OKS, ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 6820228 ENCODE Processing Pipeline 4a3e000bb900b128775f929b93fe7019 https://www.encodeproject.org/files/ENCFF899MNG/@@download/ENCFF899MNG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF796VTS bigBed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF535NWA 13499828 ENCODE Processing Pipeline c78aefcff78c4e383bbda67d22db8701 https://www.encodeproject.org/files/ENCFF796VTS/@@download/ENCFF796VTS.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF740UKL bigBed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF899MNG 13485555 ENCODE Processing Pipeline a0e3f44dfa8830b6eee2db086deef7a2 https://www.encodeproject.org/files/ENCFF740UKL/@@download/ENCFF740UKL.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF745MWQ bigBed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF571MRI 13509551 ENCODE Processing Pipeline 405c8a4f974474503ced02148be2df42 https://www.encodeproject.org/files/ENCFF745MWQ/@@download/ENCFF745MWQ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF940PJL bam unfiltered alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 50 ENCFF163SRP, ENCFF643CGH 1687447658 ENCODE Processing Pipeline 4baa3fb66ed0f2d973292ba29a59bf75 https://www.encodeproject.org/files/ENCFF940PJL/@@download/ENCFF940PJL.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF877MJO bam unfiltered alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 50 ENCFF193ROJ, ENCFF643CGH 1315485948 ENCODE Processing Pipeline f39c626bbe4a9285fffe781e68ade2c3 https://www.encodeproject.org/files/ENCFF877MJO/@@download/ENCFF877MJO.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF580GYQ bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 50 ENCFF193ROJ, ENCFF643CGH 981640803 ENCODE Processing Pipeline 623cee7b4b178da1243a5c5d283d19d2 https://www.encodeproject.org/files/ENCFF580GYQ/@@download/ENCFF580GYQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF171MMW bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 50 ENCFF163SRP, ENCFF643CGH 1243002574 ENCODE Processing Pipeline c93b65d8c6b257c7b48cd309bb92fcaf https://www.encodeproject.org/files/ENCFF171MMW/@@download/ENCFF171MMW.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF260TZA bigWig signal p-value ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF171MMW, ENCFF506QEL, ENCFF894EOG 1029274728 ENCODE Processing Pipeline 8c512cfe94ec4e80d6bd1e311d66a241 https://www.encodeproject.org/files/ENCFF260TZA/@@download/ENCFF260TZA.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF648GPD bigWig signal p-value ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF506QEL, ENCFF580GYQ, ENCFF894EOG 868255724 ENCODE Processing Pipeline 93dfb4b47eed73194d42fdde9866a5ec https://www.encodeproject.org/files/ENCFF648GPD/@@download/ENCFF648GPD.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF554VBI bigWig signal p-value ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF171MMW, ENCFF506QEL, ENCFF580GYQ, ENCFF894EOG 1184564618 ENCODE Processing Pipeline 4b0ecf5bc1b22d47d06ad63ec9703bc8 https://www.encodeproject.org/files/ENCFF554VBI/@@download/ENCFF554VBI.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF560KEF bigWig fold change over control ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF171MMW, ENCFF506QEL, ENCFF894EOG 796513543 ENCODE Processing Pipeline 4e82a136fb97b7f15e6943aa6151e95e https://www.encodeproject.org/files/ENCFF560KEF/@@download/ENCFF560KEF.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF441EYT bigWig fold change over control ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF506QEL, ENCFF580GYQ, ENCFF894EOG 556329903 ENCODE Processing Pipeline dc512dbb9613df613acf936ae06343fb https://www.encodeproject.org/files/ENCFF441EYT/@@download/ENCFF441EYT.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF832BFI bigWig fold change over control ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF171MMW, ENCFF506QEL, ENCFF580GYQ, ENCFF894EOG 1102306453 ENCODE Processing Pipeline 634fa2ec07eff31393c99ea41db52f58 https://www.encodeproject.org/files/ENCFF832BFI/@@download/ENCFF832BFI.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF687MRB bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF171MMW, ENCFF506QEL, ENCFF894EOG 6145455 ENCODE Processing Pipeline f04dbc17fe1296502a1704403e6c75c2 https://www.encodeproject.org/files/ENCFF687MRB/@@download/ENCFF687MRB.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF163FRZ bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF171MMW, ENCFF506QEL, ENCFF580GYQ, ENCFF894EOG 6679200 ENCODE Processing Pipeline 268bec653bb9acf578df5a6f78151b77 https://www.encodeproject.org/files/ENCFF163FRZ/@@download/ENCFF163FRZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF824FOH bigBed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF687MRB 13523462 ENCODE Processing Pipeline a77245670da3427dacb2bf703c98927f https://www.encodeproject.org/files/ENCFF824FOH/@@download/ENCFF824FOH.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF703KHN bigBed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF163FRZ 13525487 ENCODE Processing Pipeline 019d2c3842efd245806f13026fd8edb5 https://www.encodeproject.org/files/ENCFF703KHN/@@download/ENCFF703KHN.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF410WZD bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF506QEL, ENCFF580GYQ, ENCFF894EOG 5750998 ENCODE Processing Pipeline 71c7cadb9175b6a33d8bae3b8763e39c https://www.encodeproject.org/files/ENCFF410WZD/@@download/ENCFF410WZD.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF604LYK bigBed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF410WZD 11326862 ENCODE Processing Pipeline 5ed3cfacd316adc1a9cf3039cf87349e https://www.encodeproject.org/files/ENCFF604LYK/@@download/ENCFF604LYK.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF811HRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF097OXR 570015 ENCODE Processing Pipeline ca0a0584e37f09cad4422df69dc8f45d https://www.encodeproject.org/files/ENCFF811HRZ/@@download/ENCFF811HRZ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF097OXR bed narrowPeak optimal idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF163FRZ, ENCFF410WZD, ENCFF419RSJ, ENCFF687MRB 252924 ENCODE Processing Pipeline 082119cf2951b65a3aeb50b6014a2127 https://www.encodeproject.org/files/ENCFF097OXR/@@download/ENCFF097OXR.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF464IZM bed narrowPeak conservative idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF163FRZ, ENCFF410WZD, ENCFF419RSJ, ENCFF687MRB 193179 ENCODE Processing Pipeline d1c0a4627cf812a7978c059bde91b4aa https://www.encodeproject.org/files/ENCFF464IZM/@@download/ENCFF464IZM.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF617SCD bigBed narrowPeak conservative idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF464IZM 388756 ENCODE Processing Pipeline 11b240df70406d0bdd069fb5e533286d https://www.encodeproject.org/files/ENCFF617SCD/@@download/ENCFF617SCD.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF081YHC bed narrowPeak conservative idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF535NWA, ENCFF571MRI, ENCFF899MNG 164605 ENCODE Processing Pipeline 2765e9fa2f7fb384759382a55004d396 https://www.encodeproject.org/files/ENCFF081YHC/@@download/ENCFF081YHC.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF859RYN bigBed narrowPeak optimal idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF210DMP 414843 ENCODE Processing Pipeline 4645010561e75d032e689263e04a1e2c https://www.encodeproject.org/files/ENCFF859RYN/@@download/ENCFF859RYN.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF777QYH bigBed narrowPeak conservative idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF081YHC 348270 ENCODE Processing Pipeline 8fe3170d390c5ec69d1b3060e177ece3 https://www.encodeproject.org/files/ENCFF777QYH/@@download/ENCFF777QYH.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF210DMP bed narrowPeak optimal idr thresholded peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF535NWA, ENCFF571MRI, ENCFF899MNG 213321 ENCODE Processing Pipeline 475820ca8d28d4a631ba7c8abc2cfa52 https://www.encodeproject.org/files/ENCFF210DMP/@@download/ENCFF210DMP.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF873VOO fastq reads ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2019789132 Richard Myers, HAIB 379dad44fba13ee7891d8b2b8c4d042d SRA:SRR5339282 https://www.encodeproject.org/files/ENCFF873VOO/@@download/ENCFF873VOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF856RPX fastq reads ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1319604464 Richard Myers, HAIB 7de566f70c860c5532330ad44c41499b SRA:SRR5339283 https://www.encodeproject.org/files/ENCFF856RPX/@@download/ENCFF856RPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF866NMP bam unfiltered alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF873VOO 2319666234 ENCODE Processing Pipeline a0cdfeac1db4fb998e792d66f88b6943 https://www.encodeproject.org/files/ENCFF866NMP/@@download/ENCFF866NMP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF496IFI bam unfiltered alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF856RPX 1540248567 ENCODE Processing Pipeline 816096e0ec87c539d43ba18efbc02dcb https://www.encodeproject.org/files/ENCFF496IFI/@@download/ENCFF496IFI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF366HVP bam unfiltered alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF873VOO 2315627626 ENCODE Processing Pipeline 2b9e92c78772232936cd0a6a636c69c1 https://www.encodeproject.org/files/ENCFF366HVP/@@download/ENCFF366HVP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF220CFA bam unfiltered alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF856RPX 1542854552 ENCODE Processing Pipeline b0c8c8f0c394ea9b6a9e5bf087b434e1 https://www.encodeproject.org/files/ENCFF220CFA/@@download/ENCFF220CFA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF812EKJ bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF856RPX 1144031334 ENCODE Processing Pipeline 21f2d6e3b3f3a3a20da57b8f92b3010f https://www.encodeproject.org/files/ENCFF812EKJ/@@download/ENCFF812EKJ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF314YLR bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF873VOO 1727362895 ENCODE Processing Pipeline 92ba5945b4434f82fff9553e8bfc9dd4 https://www.encodeproject.org/files/ENCFF314YLR/@@download/ENCFF314YLR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF137QSY bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF873VOO 1726725738 ENCODE Processing Pipeline 7c4bfc79be62aed5b5906e1e04b2551b https://www.encodeproject.org/files/ENCFF137QSY/@@download/ENCFF137QSY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF560LJI bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF856RPX 1144382967 ENCODE Processing Pipeline 807f27917f1b406740ead891a4cb5ba4 https://www.encodeproject.org/files/ENCFF560LJI/@@download/ENCFF560LJI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF270AXI bigWig signal p-value ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF314YLR 631718009 ENCODE Processing Pipeline a2ba7c84dc1293b4583264ec258599ea https://www.encodeproject.org/files/ENCFF270AXI/@@download/ENCFF270AXI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF207IYI bigWig signal p-value ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF560LJI 587660822 ENCODE Processing Pipeline 00ef8efff2839234784204f666b3b817 https://www.encodeproject.org/files/ENCFF207IYI/@@download/ENCFF207IYI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF962KJF bigWig signal p-value ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF314YLR, ENCFF560LJI 656284642 ENCODE Processing Pipeline 27ce804d1c1c9a3e7867c6771ac6f6b4 https://www.encodeproject.org/files/ENCFF962KJF/@@download/ENCFF962KJF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF619BRV bigWig fold change over control ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF314YLR 611230378 ENCODE Processing Pipeline f211bfddd80cc9bfc13235090406561b https://www.encodeproject.org/files/ENCFF619BRV/@@download/ENCFF619BRV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF847ZHC bigWig fold change over control ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF560LJI 432573206 ENCODE Processing Pipeline 7d755497656ee9950acbf6b3f5448e8a https://www.encodeproject.org/files/ENCFF847ZHC/@@download/ENCFF847ZHC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF439CMK bigWig fold change over control ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF314YLR, ENCFF560LJI 876284271 ENCODE Processing Pipeline 8ae7db0f8f5e67b75794eefdb6ead004 https://www.encodeproject.org/files/ENCFF439CMK/@@download/ENCFF439CMK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF635DPR bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF314YLR 6472967 ENCODE Processing Pipeline bb70bec264514723cc6b0cf4eb09fa16 https://www.encodeproject.org/files/ENCFF635DPR/@@download/ENCFF635DPR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF553NCT bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF560LJI 5922585 ENCODE Processing Pipeline 03e0dbbe92051c0c80422fe45900d730 https://www.encodeproject.org/files/ENCFF553NCT/@@download/ENCFF553NCT.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF065UMU bigBed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF635DPR 12979025 ENCODE Processing Pipeline 8a51aa9c41f12a45eb2252ac212748a3 https://www.encodeproject.org/files/ENCFF065UMU/@@download/ENCFF065UMU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF663IJW bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF314YLR, ENCFF560LJI 6756522 ENCODE Processing Pipeline 64bec2c29938de9368b75658101d503b https://www.encodeproject.org/files/ENCFF663IJW/@@download/ENCFF663IJW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF480NOF bigBed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF553NCT 12963560 ENCODE Processing Pipeline 92ae86387b1eb90a276917769e722ff3 https://www.encodeproject.org/files/ENCFF480NOF/@@download/ENCFF480NOF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF524QOB bigBed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF663IJW 12912401 ENCODE Processing Pipeline b049005eb10dd9d417a04201e8c930bb https://www.encodeproject.org/files/ENCFF524QOB/@@download/ENCFF524QOB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF503PQW bed narrowPeak conservative idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF553NCT, ENCFF635DPR, ENCFF663IJW 654812 ENCODE Processing Pipeline 3d6df4efbeb02674e3f0891516727fc1 https://www.encodeproject.org/files/ENCFF503PQW/@@download/ENCFF503PQW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF176IFN bigBed narrowPeak conservative idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF503PQW 1229712 ENCODE Processing Pipeline 1234a0dbeeddc69df2f20e0c2bfd2867 https://www.encodeproject.org/files/ENCFF176IFN/@@download/ENCFF176IFN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695CFM bigBed narrowPeak optimal idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF080FAU 1238164 ENCODE Processing Pipeline 45242596f8e227420ac1075d0dd0cba4 https://www.encodeproject.org/files/ENCFF695CFM/@@download/ENCFF695CFM.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF080FAU bed narrowPeak optimal idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF553NCT, ENCFF635DPR, ENCFF663IJW 661301 ENCODE Processing Pipeline c2795217ad917b360aedd062434237a1 https://www.encodeproject.org/files/ENCFF080FAU/@@download/ENCFF080FAU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF950SNW bigWig signal p-value ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF137QSY, ENCFF203ABR 1308434160 ENCODE Processing Pipeline 39782d967d9266fb6ac3015ddf23b681 https://www.encodeproject.org/files/ENCFF950SNW/@@download/ENCFF950SNW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF969LJW bigWig signal p-value ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF812EKJ 1170566969 ENCODE Processing Pipeline 855e8de9c78232975cdd80761878c48a https://www.encodeproject.org/files/ENCFF969LJW/@@download/ENCFF969LJW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF430ABI bigWig signal p-value ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF137QSY, ENCFF203ABR, ENCFF812EKJ 1383471088 ENCODE Processing Pipeline 0ceb0c9f4db3bbd2a64f8d3e3b6fffbc https://www.encodeproject.org/files/ENCFF430ABI/@@download/ENCFF430ABI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF095OTP bigWig fold change over control ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF137QSY, ENCFF203ABR 1115716047 ENCODE Processing Pipeline c9e3833086d70d817b2ff802715d0fd6 https://www.encodeproject.org/files/ENCFF095OTP/@@download/ENCFF095OTP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF176VVT bigWig fold change over control ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF812EKJ 845220033 ENCODE Processing Pipeline da186d86e92b551befe3585cb05a1290 https://www.encodeproject.org/files/ENCFF176VVT/@@download/ENCFF176VVT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF172EWV bigWig fold change over control ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF137QSY, ENCFF203ABR, ENCFF812EKJ 1502623835 ENCODE Processing Pipeline 540a21108fa57ca41f7dc4ea38def4ac https://www.encodeproject.org/files/ENCFF172EWV/@@download/ENCFF172EWV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF233SWX bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF137QSY, ENCFF203ABR 6895557 ENCODE Processing Pipeline 5e56bccc1a809447eda14f2747cc3bcc https://www.encodeproject.org/files/ENCFF233SWX/@@download/ENCFF233SWX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894NFO bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF812EKJ 6541321 ENCODE Processing Pipeline 961785eb39b5f3d1069b55b9e75f0702 https://www.encodeproject.org/files/ENCFF894NFO/@@download/ENCFF894NFO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF759QMB bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF137QSY, ENCFF203ABR, ENCFF812EKJ 7076285 ENCODE Processing Pipeline 9d6ceb166229080c2f53437081afea86 https://www.encodeproject.org/files/ENCFF759QMB/@@download/ENCFF759QMB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF320IJX bigBed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF233SWX 13001799 ENCODE Processing Pipeline 44d9023c9b902f35512b6b52430e4af1 https://www.encodeproject.org/files/ENCFF320IJX/@@download/ENCFF320IJX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF293WFB bigBed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF894NFO 12989657 ENCODE Processing Pipeline 08066fd3e91170e998b32580a392a1de https://www.encodeproject.org/files/ENCFF293WFB/@@download/ENCFF293WFB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405DSY bed narrowPeak conservative idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF233SWX, ENCFF759QMB, ENCFF894NFO 677633 ENCODE Processing Pipeline f05f810940d183e9ac8d32887b6c8319 https://www.encodeproject.org/files/ENCFF405DSY/@@download/ENCFF405DSY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF348SJR bigBed narrowPeak conservative idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF405DSY 1332182 ENCODE Processing Pipeline bf072e56bded1e68c1b8cf7717344f69 https://www.encodeproject.org/files/ENCFF348SJR/@@download/ENCFF348SJR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF712TCJ bed narrowPeak optimal idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF233SWX, ENCFF759QMB, ENCFF894NFO 683051 ENCODE Processing Pipeline f98bd0e50928b4854de250c17a364d3a https://www.encodeproject.org/files/ENCFF712TCJ/@@download/ENCFF712TCJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF059EMY bigBed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF759QMB 13100465 ENCODE Processing Pipeline ee7bf745100fe0595cac12cf9fc83e06 https://www.encodeproject.org/files/ENCFF059EMY/@@download/ENCFF059EMY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF255STT bigBed narrowPeak optimal idr thresholded peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF712TCJ 1338581 ENCODE Processing Pipeline cde90a6eb6b73daa755698d116cc81c4 https://www.encodeproject.org/files/ENCFF255STT/@@download/ENCFF255STT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF674UHN fastq reads ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1426978299 Richard Myers, HAIB 2db3952bb3c764590f171a06b374c1b6 SRA:SRR5339612 https://www.encodeproject.org/files/ENCFF674UHN/@@download/ENCFF674UHN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887ZSW fastq reads ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1918826516 Richard Myers, HAIB af5e12eddce012a030c97ff2e790dd35 SRA:SRR5339611 https://www.encodeproject.org/files/ENCFF887ZSW/@@download/ENCFF887ZSW.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF998ZIJ bam unfiltered alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF674UHN, ENCFF807MUK 1680634974 ENCODE Processing Pipeline 85159d44dcea586182728dff2ab621b6 https://www.encodeproject.org/files/ENCFF998ZIJ/@@download/ENCFF998ZIJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF568LZN bam unfiltered alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF674UHN 1683593491 ENCODE Processing Pipeline 8a72b162b867c2ee062ce773d9956cb0 https://www.encodeproject.org/files/ENCFF568LZN/@@download/ENCFF568LZN.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF809TPQ bam unfiltered alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF887ZSW 2168824678 ENCODE Processing Pipeline 10cc8fdbd8cdbc6cf77cfd007d132bf2 https://www.encodeproject.org/files/ENCFF809TPQ/@@download/ENCFF809TPQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF464SUA bam unfiltered alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF887ZSW 2165412612 ENCODE Processing Pipeline bf22fbdd3a56e60e6284d5157d26d4eb https://www.encodeproject.org/files/ENCFF464SUA/@@download/ENCFF464SUA.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425DTQ bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF674UHN 1285257952 ENCODE Processing Pipeline dde293758c499a59e9be5cd406ca7f5c https://www.encodeproject.org/files/ENCFF425DTQ/@@download/ENCFF425DTQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF905KCK bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF674UHN, ENCFF807MUK 1284669788 ENCODE Processing Pipeline c406b7ba96b53cdf159857d6287b40a8 https://www.encodeproject.org/files/ENCFF905KCK/@@download/ENCFF905KCK.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392ZYL bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF887ZSW 1605622042 ENCODE Processing Pipeline 5d8b64088d07b3e1d008844f41389d64 https://www.encodeproject.org/files/ENCFF392ZYL/@@download/ENCFF392ZYL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF913QFK bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF887ZSW 1605012320 ENCODE Processing Pipeline 4f19ba6c0557a4b9e7d0e39aa6b8700d https://www.encodeproject.org/files/ENCFF913QFK/@@download/ENCFF913QFK.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF325QKP bigWig signal p-value ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF392ZYL 639679927 ENCODE Processing Pipeline afaaab7e6bdc7c2206c8ec7e322ffcb9 https://www.encodeproject.org/files/ENCFF325QKP/@@download/ENCFF325QKP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF307IWB bigWig fold change over control ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF392ZYL 613488256 ENCODE Processing Pipeline 21407c19fbb8880246a766d6670d4d80 https://www.encodeproject.org/files/ENCFF307IWB/@@download/ENCFF307IWB.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF156BEU bigWig signal p-value ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF425DTQ 535281255 ENCODE Processing Pipeline 79007e446ca77af6adc8b3d7229c59ed https://www.encodeproject.org/files/ENCFF156BEU/@@download/ENCFF156BEU.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695UKE bigWig signal p-value ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF392ZYL, ENCFF425DTQ 676512065 ENCODE Processing Pipeline baf6ef3e53c10b44b422cee67055e52f https://www.encodeproject.org/files/ENCFF695UKE/@@download/ENCFF695UKE.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795SZN bigWig fold change over control ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF425DTQ 514886827 ENCODE Processing Pipeline 7357e5d09bd3c980ae426d38a1e81efc https://www.encodeproject.org/files/ENCFF795SZN/@@download/ENCFF795SZN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF895QBI bigWig fold change over control ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF392ZYL, ENCFF425DTQ 936358604 ENCODE Processing Pipeline 1ea2cf4c5d3120d11516c6b17e7f8c60 https://www.encodeproject.org/files/ENCFF895QBI/@@download/ENCFF895QBI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF089XBM bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF425DTQ 6132076 ENCODE Processing Pipeline 4327439ed5eb7c23dc5606de77911429 https://www.encodeproject.org/files/ENCFF089XBM/@@download/ENCFF089XBM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF522BHC bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF392ZYL 6192312 ENCODE Processing Pipeline c164ceda0dd3344190175cd9f6c7e3b7 https://www.encodeproject.org/files/ENCFF522BHC/@@download/ENCFF522BHC.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF495GBO bigBed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF522BHC 13033927 ENCODE Processing Pipeline 316c3092650bf4c22284ec8fbf0fd3a7 https://www.encodeproject.org/files/ENCFF495GBO/@@download/ENCFF495GBO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF233KNL bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF392ZYL, ENCFF425DTQ 6747765 ENCODE Processing Pipeline e4eb78b8a516b2aa2b381df42f6c9b63 https://www.encodeproject.org/files/ENCFF233KNL/@@download/ENCFF233KNL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF903HWC bigBed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF089XBM 13124910 ENCODE Processing Pipeline 96e14c572709a93bc624aaa57558ad38 https://www.encodeproject.org/files/ENCFF903HWC/@@download/ENCFF903HWC.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF867UQQ bigBed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF233KNL 13116505 ENCODE Processing Pipeline 989099184dddb151bdc9669bd442855d https://www.encodeproject.org/files/ENCFF867UQQ/@@download/ENCFF867UQQ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF173MFM bigBed narrowPeak conservative idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF299JTM 1040246 ENCODE Processing Pipeline 0e186c9dc40eaf3c2c3ed1448bccaa26 https://www.encodeproject.org/files/ENCFF173MFM/@@download/ENCFF173MFM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF299JTM bed narrowPeak conservative idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF089XBM, ENCFF233KNL, ENCFF419RSJ, ENCFF522BHC 505337 ENCODE Processing Pipeline 050d29f551b742077c5f8be415106078 https://www.encodeproject.org/files/ENCFF299JTM/@@download/ENCFF299JTM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF703VBH bed narrowPeak optimal idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF089XBM, ENCFF233KNL, ENCFF419RSJ, ENCFF522BHC 707686 ENCODE Processing Pipeline 4d298c239646137f7678484c9d3d83fc https://www.encodeproject.org/files/ENCFF703VBH/@@download/ENCFF703VBH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF731ORL bigBed narrowPeak optimal idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF703VBH 1343587 ENCODE Processing Pipeline c14c9662acb56b5fcba41db454cd94d8 https://www.encodeproject.org/files/ENCFF731ORL/@@download/ENCFF731ORL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF593AYJ bigWig signal p-value ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF913QFK 1214247008 ENCODE Processing Pipeline fa1dbef45efc71cf46247a53f41ebe66 https://www.encodeproject.org/files/ENCFF593AYJ/@@download/ENCFF593AYJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF452DDJ bigWig signal p-value ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF905KCK 1341013670 ENCODE Processing Pipeline 2fef2ce25ddf959c79ddcaca955c2e53 https://www.encodeproject.org/files/ENCFF452DDJ/@@download/ENCFF452DDJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517FGS bigWig signal p-value ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF905KCK, ENCFF913QFK 1355957857 ENCODE Processing Pipeline 7e766b7a63e8917021fd8360d58265d3 https://www.encodeproject.org/files/ENCFF517FGS/@@download/ENCFF517FGS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF721DXB bigWig fold change over control ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF913QFK 1085956959 ENCODE Processing Pipeline a430f95d095720b02f54e4f0eea08d49 https://www.encodeproject.org/files/ENCFF721DXB/@@download/ENCFF721DXB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF170AON bigWig fold change over control ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF905KCK 981121252 ENCODE Processing Pipeline cef175fa610a0228028c0a9d05221fc8 https://www.encodeproject.org/files/ENCFF170AON/@@download/ENCFF170AON.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF506FGX bigWig fold change over control ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF905KCK, ENCFF913QFK 1578706984 ENCODE Processing Pipeline 981722fe872f5a4c1d255898dac1f82f https://www.encodeproject.org/files/ENCFF506FGX/@@download/ENCFF506FGX.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF061UUX bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF913QFK 6606673 ENCODE Processing Pipeline 930238eeeba70b01e12f0675ba28dc18 https://www.encodeproject.org/files/ENCFF061UUX/@@download/ENCFF061UUX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF338AGZ bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF905KCK 6537015 ENCODE Processing Pipeline c556e712ba20545c81d98bcb8b0160db https://www.encodeproject.org/files/ENCFF338AGZ/@@download/ENCFF338AGZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF066LZS bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF905KCK, ENCFF913QFK 6941256 ENCODE Processing Pipeline 831b0091e45e1fff2e3f22a44d36294a https://www.encodeproject.org/files/ENCFF066LZS/@@download/ENCFF066LZS.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF687HVB bigBed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF338AGZ 12931700 ENCODE Processing Pipeline b348c74826d09ef8f80d09f9450a8647 https://www.encodeproject.org/files/ENCFF687HVB/@@download/ENCFF687HVB.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF878PDS bigBed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF061UUX 13023384 ENCODE Processing Pipeline 24fd68a74703680c33fa2674e30f2824 https://www.encodeproject.org/files/ENCFF878PDS/@@download/ENCFF878PDS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF199EQW bigBed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF066LZS 13049995 ENCODE Processing Pipeline 1945e4d1f703b2c85ae38853e5c3ca44 https://www.encodeproject.org/files/ENCFF199EQW/@@download/ENCFF199EQW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF273UXU bed narrowPeak conservative idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF061UUX, ENCFF066LZS, ENCFF338AGZ 505127 ENCODE Processing Pipeline fc88ab5a5a852a8cc18f675051ed310f https://www.encodeproject.org/files/ENCFF273UXU/@@download/ENCFF273UXU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF524UBS bigBed narrowPeak conservative idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF273UXU 1080681 ENCODE Processing Pipeline ad16535b891f930fe76a0386339c9fab https://www.encodeproject.org/files/ENCFF524UBS/@@download/ENCFF524UBS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF636RTO bigBed narrowPeak optimal idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF665EOZ 1337314 ENCODE Processing Pipeline 098468b79ad5a462baa27f7f2e1fb190 https://www.encodeproject.org/files/ENCFF636RTO/@@download/ENCFF636RTO.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF665EOZ bed narrowPeak optimal idr thresholded peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF061UUX, ENCFF066LZS, ENCFF338AGZ 673774 ENCODE Processing Pipeline dc39243c3b191952ac385581e35e25ef https://www.encodeproject.org/files/ENCFF665EOZ/@@download/ENCFF665EOZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000WQG bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 1 588732516 Michael Snyder, Stanford 9b32d5ad055b1cf6280c28ce405c3a34 https://www.encodeproject.org/files/ENCFF000WQG/@@download/ENCFF000WQG.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WQH bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VGN 1792314 Michael Snyder, Stanford f494095d379503eee5603ad4cef91cfe https://www.encodeproject.org/files/ENCFF000WQH/@@download/ENCFF000WQH.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WQI fastq reads ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1188828873 Michael Snyder, Stanford a2e171ecafd93c25bdbe7fb757ff4a52 https://www.encodeproject.org/files/ENCFF000WQI/@@download/ENCFF000WQI.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WQL fastq reads ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1162522691 Michael Snyder, Stanford 330c1e295eccfb50f84363bdeda47c17 https://www.encodeproject.org/files/ENCFF000WQL/@@download/ENCFF000WQL.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WQO bigWig signal ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 424654410 Michael Snyder, Stanford ea63a3d67e7622de53ccfa54f6c5c948 https://www.encodeproject.org/files/ENCFF000WQO/@@download/ENCFF000WQO.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WQP bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 1 552259300 Michael Snyder, Stanford d63325c3f57d2719bfb39783492ce1fc https://www.encodeproject.org/files/ENCFF000WQP/@@download/ENCFF000WQP.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VGN bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 774520 Michael Snyder, Stanford f331ce00876bfaaa67859f60c78dd416 https://www.encodeproject.org/files/ENCFF001VGN/@@download/ENCFF001VGN.bed.gz hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CQP bed narrowPeak optimal idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 295772 ENCODE Consortium Analysis Working Group c57049823cef0ab9af77fae6384cf1bd https://www.encodeproject.org/files/ENCFF002CQP/@@download/ENCFF002CQP.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF725MLU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CQP 746481 ENCODE Consortium 13e586af32392120ccf5b5a6ba9eef9d https://www.encodeproject.org/files/ENCFF725MLU/@@download/ENCFF725MLU.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF413XOW bam unfiltered alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQL, ENCFF643CGH 1319701612 ENCODE Processing Pipeline 54b476502933b40488298beb10c21758 https://www.encodeproject.org/files/ENCFF413XOW/@@download/ENCFF413XOW.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF223DHM bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQL, ENCFF643CGH 845913815 ENCODE Processing Pipeline b8d13412b8698db2d45fefed4ba1177e https://www.encodeproject.org/files/ENCFF223DHM/@@download/ENCFF223DHM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF757ZWI bam unfiltered alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQI, ENCFF643CGH 1341779875 ENCODE Processing Pipeline 0690212b3645096d9d77ac0520530cb3 https://www.encodeproject.org/files/ENCFF757ZWI/@@download/ENCFF757ZWI.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF517LYO bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQI, ENCFF643CGH 930366010 ENCODE Processing Pipeline d2354af53e1643b93ddf8325f856b2fc https://www.encodeproject.org/files/ENCFF517LYO/@@download/ENCFF517LYO.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF837EXV bam unfiltered alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQL, ENCFF807MUK 1314140010 ENCODE Processing Pipeline 97d47bb070f14a6f778265ff56fc6c9c https://www.encodeproject.org/files/ENCFF837EXV/@@download/ENCFF837EXV.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF686DLY bam unfiltered alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQI, ENCFF807MUK 1336592366 ENCODE Processing Pipeline d23f87c71af03ac0860f9df29d59474b https://www.encodeproject.org/files/ENCFF686DLY/@@download/ENCFF686DLY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF195GBJ bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQL, ENCFF807MUK 846303741 ENCODE Processing Pipeline e515b890df1ae3ff99966e3577f4e189 https://www.encodeproject.org/files/ENCFF195GBJ/@@download/ENCFF195GBJ.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF752RXF bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQI, ENCFF807MUK 930808537 ENCODE Processing Pipeline e460e0aaf6ea53ed1102fcf6a00cb4f4 https://www.encodeproject.org/files/ENCFF752RXF/@@download/ENCFF752RXF.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF984AMV bigWig signal p-value ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF223DHM, ENCFF513EWK 673544774 ENCODE Processing Pipeline 9e080d88c299f58054e7bd659ba010a6 https://www.encodeproject.org/files/ENCFF984AMV/@@download/ENCFF984AMV.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF536GBY bigWig signal p-value ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF517LYO 523123123 ENCODE Processing Pipeline 0cbf0a3edf6c63bdd4ea70a5ab2a984d https://www.encodeproject.org/files/ENCFF536GBY/@@download/ENCFF536GBY.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF177UEN bigWig signal p-value ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF223DHM, ENCFF513EWK, ENCFF517LYO 745997779 ENCODE Processing Pipeline e9f11fb70165ceb186b359d673fa2a7a https://www.encodeproject.org/files/ENCFF177UEN/@@download/ENCFF177UEN.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF872ZCR bigWig fold change over control ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF517LYO 515980538 ENCODE Processing Pipeline 04c14d47bc7f342125b31925a301594d https://www.encodeproject.org/files/ENCFF872ZCR/@@download/ENCFF872ZCR.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF445KLN bigWig fold change over control ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF223DHM, ENCFF513EWK 479509520 ENCODE Processing Pipeline 9c31bac90c196c9ffa61d5816eaa226d https://www.encodeproject.org/files/ENCFF445KLN/@@download/ENCFF445KLN.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF320VSM bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF517LYO 4872884 ENCODE Processing Pipeline e60915314761b7041d6bffd3ffe98559 https://www.encodeproject.org/files/ENCFF320VSM/@@download/ENCFF320VSM.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF594ALF bigWig fold change over control ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF223DHM, ENCFF513EWK, ENCFF517LYO 837951877 ENCODE Processing Pipeline cd51ad6f4cfca6b91c54107e7015c909 https://www.encodeproject.org/files/ENCFF594ALF/@@download/ENCFF594ALF.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF412TSA bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF223DHM, ENCFF513EWK 4863765 ENCODE Processing Pipeline 8dc76d59cf5c7582394fe7780b7f8c4d https://www.encodeproject.org/files/ENCFF412TSA/@@download/ENCFF412TSA.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF747OEL bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF320VSM 11317585 ENCODE Processing Pipeline 28830ac724e38dd77f0accf1c5bb088c https://www.encodeproject.org/files/ENCFF747OEL/@@download/ENCFF747OEL.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF189XZA bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF412TSA 11262076 ENCODE Processing Pipeline 95e1aae611e82822bfdb37b2ed33492f https://www.encodeproject.org/files/ENCFF189XZA/@@download/ENCFF189XZA.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF429LKK bed narrowPeak conservative idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF320VSM, ENCFF412TSA, ENCFF419RSJ, ENCFF837INX 231494 ENCODE Processing Pipeline 8f34ca0abd6c6b7213e2791669f1c0e5 https://www.encodeproject.org/files/ENCFF429LKK/@@download/ENCFF429LKK.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF837INX bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF223DHM, ENCFF513EWK, ENCFF517LYO 3037953 ENCODE Processing Pipeline 084299ae5add9fe557f068f4e61515fe https://www.encodeproject.org/files/ENCFF837INX/@@download/ENCFF837INX.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF851YHG bed narrowPeak optimal idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF320VSM, ENCFF412TSA, ENCFF419RSJ, ENCFF837INX 238333 ENCODE Processing Pipeline c65a25bd893fd3bae4be49add7eb739c https://www.encodeproject.org/files/ENCFF851YHG/@@download/ENCFF851YHG.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF761DVO bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF837INX 6135976 ENCODE Processing Pipeline 99b37c4b8a3bffafbdb260f3337aad8c https://www.encodeproject.org/files/ENCFF761DVO/@@download/ENCFF761DVO.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF685OEC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF851YHG 492830 ENCODE Processing Pipeline 9ffc15c9e9d61b1a692143b4d9a1b128 https://www.encodeproject.org/files/ENCFF685OEC/@@download/ENCFF685OEC.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF162FBK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF429LKK 481915 ENCODE Processing Pipeline ae0c1648d8303fba9117aaec8eefa1fd https://www.encodeproject.org/files/ENCFF162FBK/@@download/ENCFF162FBK.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF502ZML bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF195GBJ, ENCFF599MVB 4856877 ENCODE Processing Pipeline 87d18835bee9c0737f2185185f2ebbcf https://www.encodeproject.org/files/ENCFF502ZML/@@download/ENCFF502ZML.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF684NTX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF977MDK 480028 ENCODE Processing Pipeline d524688d04961739f4e808ffe9d2a735 https://www.encodeproject.org/files/ENCFF684NTX/@@download/ENCFF684NTX.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF977MDK bed narrowPeak optimal idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF415TPT, ENCFF502ZML, ENCFF627CTC 231168 ENCODE Processing Pipeline f0d5e3cdd99adc2c94a24de809558a54 https://www.encodeproject.org/files/ENCFF977MDK/@@download/ENCFF977MDK.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF200OQU bigWig signal p-value ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF752RXF 570946594 ENCODE Processing Pipeline ae3cd92d9965f0f867ff81afca30cb11 https://www.encodeproject.org/files/ENCFF200OQU/@@download/ENCFF200OQU.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF301MLC bigWig signal p-value ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF195GBJ, ENCFF599MVB 565656102 ENCODE Processing Pipeline 216b6de578a5ffad7e075d403ada3b1a https://www.encodeproject.org/files/ENCFF301MLC/@@download/ENCFF301MLC.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF329XXT bigWig fold change over control ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF195GBJ, ENCFF599MVB 475438443 ENCODE Processing Pipeline 38f52e847871de798aaa329db1522a06 https://www.encodeproject.org/files/ENCFF329XXT/@@download/ENCFF329XXT.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF609TRK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF486BBS 478000 ENCODE Processing Pipeline 0bc4b9efa418316e19e4b55718507c97 https://www.encodeproject.org/files/ENCFF609TRK/@@download/ENCFF609TRK.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF624EKO bigWig fold change over control ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF752RXF 522183123 ENCODE Processing Pipeline e51f5294d3f7b0c6e1ffd382ebd75f9c https://www.encodeproject.org/files/ENCFF624EKO/@@download/ENCFF624EKO.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF113MWT bigWig fold change over control ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195GBJ, ENCFF599MVB, ENCFF752RXF 840528612 ENCODE Processing Pipeline 649beddee431220085ffc6179cd26de0 https://www.encodeproject.org/files/ENCFF113MWT/@@download/ENCFF113MWT.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF705GWP bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF415TPT 11328568 ENCODE Processing Pipeline 0a15a5514c660945b038d8f711582b6e https://www.encodeproject.org/files/ENCFF705GWP/@@download/ENCFF705GWP.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF486BBS bed narrowPeak conservative idr thresholded peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF415TPT, ENCFF502ZML, ENCFF627CTC 229199 ENCODE Processing Pipeline 9c889f1be4a0e6c5a27e4f390b42a034 https://www.encodeproject.org/files/ENCFF486BBS/@@download/ENCFF486BBS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF627CTC bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195GBJ, ENCFF599MVB, ENCFF752RXF 2987830 ENCODE Processing Pipeline 70129e37d2c96b6020ec8d2bde4c7747 https://www.encodeproject.org/files/ENCFF627CTC/@@download/ENCFF627CTC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF614MOW bigWig signal p-value ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195GBJ, ENCFF599MVB, ENCFF752RXF 759651408 ENCODE Processing Pipeline f614be913d65a82ed9be3cfd4db37ffe https://www.encodeproject.org/files/ENCFF614MOW/@@download/ENCFF614MOW.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF415TPT bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF752RXF 4912372 ENCODE Processing Pipeline b6972a9d10e24b86f551d68954cca3d2 https://www.encodeproject.org/files/ENCFF415TPT/@@download/ENCFF415TPT.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF649FVX bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF502ZML 11255174 ENCODE Processing Pipeline ddf96b087c45b86b4c9c8537cdbbb323 https://www.encodeproject.org/files/ENCFF649FVX/@@download/ENCFF649FVX.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF611LPB bigBed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF627CTC 6000531 ENCODE Processing Pipeline 5224f93601c5b0e1c352fee0f30421b9 https://www.encodeproject.org/files/ENCFF611LPB/@@download/ENCFF611LPB.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF320DMI fastq reads ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1415907659 Richard Myers, HAIB df9d07c244d5f43ffa8359d0341af65b SRA:SRR5338810 https://www.encodeproject.org/files/ENCFF320DMI/@@download/ENCFF320DMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308NXH fastq reads ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1644962227 Richard Myers, HAIB ab6e2ad5e4e490312c5bb5d8251379e6 SRA:SRR5338811 https://www.encodeproject.org/files/ENCFF308NXH/@@download/ENCFF308NXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF601TEC bam unfiltered alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF320DMI, ENCFF643CGH 1629637050 ENCODE Processing Pipeline ea05622f52b94b4191615fad0c21a262 https://www.encodeproject.org/files/ENCFF601TEC/@@download/ENCFF601TEC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF109LMR bam unfiltered alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF308NXH, ENCFF643CGH 1875324868 ENCODE Processing Pipeline 6fca9af57d7048348f7e331beb8e36ab https://www.encodeproject.org/files/ENCFF109LMR/@@download/ENCFF109LMR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782NHL bam unfiltered alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF320DMI, ENCFF807MUK 1626564106 ENCODE Processing Pipeline a0391ee6ffc4609995cf543fffc21160 https://www.encodeproject.org/files/ENCFF782NHL/@@download/ENCFF782NHL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF893UTT bam unfiltered alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF308NXH, ENCFF807MUK 1871270342 ENCODE Processing Pipeline 5341a0a8b9de953b42f8856a4686e12d https://www.encodeproject.org/files/ENCFF893UTT/@@download/ENCFF893UTT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF591JSQ bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF320DMI, ENCFF643CGH 1176200973 ENCODE Processing Pipeline 00f63db27c01b3d288fbb80f1e7d3569 https://www.encodeproject.org/files/ENCFF591JSQ/@@download/ENCFF591JSQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF539DZV bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF320DMI, ENCFF807MUK 1175921518 ENCODE Processing Pipeline a6fb7e72e7f35bc145f673b0c5ab6e2d https://www.encodeproject.org/files/ENCFF539DZV/@@download/ENCFF539DZV.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF934ZXS bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF308NXH, ENCFF807MUK 1307374240 ENCODE Processing Pipeline c622aaa1121734ca56c495b5ce0de3c7 https://www.encodeproject.org/files/ENCFF934ZXS/@@download/ENCFF934ZXS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649MWS bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF308NXH, ENCFF643CGH 1307882865 ENCODE Processing Pipeline c9590fea145b416eafd8e32e11c1c7b0 https://www.encodeproject.org/files/ENCFF649MWS/@@download/ENCFF649MWS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF471NNH bigWig signal p-value ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF649MWS 549261777 ENCODE Processing Pipeline 4d7d661fa4926707195be013daa09c46 https://www.encodeproject.org/files/ENCFF471NNH/@@download/ENCFF471NNH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF375WUB bigWig signal p-value ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF591JSQ 503424233 ENCODE Processing Pipeline 5ec55cd0e13a1c6567cb03fa3ac9fc09 https://www.encodeproject.org/files/ENCFF375WUB/@@download/ENCFF375WUB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF889EMW bigWig fold change over control ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF649MWS 518821051 ENCODE Processing Pipeline c50d994071c58ba01cc72a068ba1a0a5 https://www.encodeproject.org/files/ENCFF889EMW/@@download/ENCFF889EMW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF674CEI bigWig signal p-value ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF591JSQ, ENCFF649MWS 655934383 ENCODE Processing Pipeline 01df2ffa6d6ad760bd5e3004e7a0cb1b https://www.encodeproject.org/files/ENCFF674CEI/@@download/ENCFF674CEI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF608DQK bigWig fold change over control ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF591JSQ 479106844 ENCODE Processing Pipeline bc44c7fe1668f68df4cd2e54695d40b8 https://www.encodeproject.org/files/ENCFF608DQK/@@download/ENCFF608DQK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF409IGH bigWig fold change over control ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF591JSQ, ENCFF649MWS 816456020 ENCODE Processing Pipeline 9de2bea7186662f84cb47d5964240e36 https://www.encodeproject.org/files/ENCFF409IGH/@@download/ENCFF409IGH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304NFW bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF649MWS 5831018 ENCODE Processing Pipeline 1003f02319c7176e3ced7977ebd4d493 https://www.encodeproject.org/files/ENCFF304NFW/@@download/ENCFF304NFW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF963REE bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF591JSQ, ENCFF649MWS 6505545 ENCODE Processing Pipeline f8d9625438f1c1f1d379434aa9767893 https://www.encodeproject.org/files/ENCFF963REE/@@download/ENCFF963REE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF231YHF bigBed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF304NFW 13109405 ENCODE Processing Pipeline 71052e547ce364805e2c703b9d856b84 https://www.encodeproject.org/files/ENCFF231YHF/@@download/ENCFF231YHF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF223LFM bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF591JSQ 5786177 ENCODE Processing Pipeline f50f41f6f84065bf9cfbc37a5fe49719 https://www.encodeproject.org/files/ENCFF223LFM/@@download/ENCFF223LFM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF403RUG bigBed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF223LFM 12976239 ENCODE Processing Pipeline ca9fa1724d2a58be3a35901b1d7a92be https://www.encodeproject.org/files/ENCFF403RUG/@@download/ENCFF403RUG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF788KQA bigBed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF963REE 13162035 ENCODE Processing Pipeline 4d96e72216378152ba0ea0d7b65af606 https://www.encodeproject.org/files/ENCFF788KQA/@@download/ENCFF788KQA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF850BZK bigBed narrowPeak optimal idr thresholded peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF458WPZ 1412283 ENCODE Processing Pipeline d0eb14156fdfec7cc4e7090762d8d572 https://www.encodeproject.org/files/ENCFF850BZK/@@download/ENCFF850BZK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF458WPZ bed narrowPeak optimal idr thresholded peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF223LFM, ENCFF304NFW, ENCFF419RSJ, ENCFF963REE 740552 ENCODE Processing Pipeline 69e38e426571a8e2e3222db87355371e https://www.encodeproject.org/files/ENCFF458WPZ/@@download/ENCFF458WPZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF748RLB bigWig signal p-value ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF934ZXS 1181981377 ENCODE Processing Pipeline 202329d6db10ae631260d003090724e8 https://www.encodeproject.org/files/ENCFF748RLB/@@download/ENCFF748RLB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF715OXA bigWig signal p-value ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF539DZV, ENCFF934ZXS 1349693555 ENCODE Processing Pipeline 6d619abdee36a79609aee3314ed6d379 https://www.encodeproject.org/files/ENCFF715OXA/@@download/ENCFF715OXA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF959SHG bigWig signal p-value ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF539DZV 1225108074 ENCODE Processing Pipeline 6cab367aebd7c872bf8ba584b506e51e https://www.encodeproject.org/files/ENCFF959SHG/@@download/ENCFF959SHG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF940EJZ bigWig fold change over control ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF934ZXS 950703137 ENCODE Processing Pipeline 1b002a8089ae17c4ae38ec7d25f5db7a https://www.encodeproject.org/files/ENCFF940EJZ/@@download/ENCFF940EJZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF784RFY bigWig fold change over control ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF539DZV 889301734 ENCODE Processing Pipeline 808fbe2c70639707ac8e9611c114231e https://www.encodeproject.org/files/ENCFF784RFY/@@download/ENCFF784RFY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF664JQM bigWig fold change over control ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF539DZV, ENCFF934ZXS 1379235724 ENCODE Processing Pipeline 2720e14e55a454ad18ead124420b3929 https://www.encodeproject.org/files/ENCFF664JQM/@@download/ENCFF664JQM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF969XGP bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF934ZXS 6378259 ENCODE Processing Pipeline 62d1d53fd38c29c88b0dfb60f33df014 https://www.encodeproject.org/files/ENCFF969XGP/@@download/ENCFF969XGP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF993HDF bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF539DZV 6311512 ENCODE Processing Pipeline 6f9b8610d33c0956a0f84b6a45dab71d https://www.encodeproject.org/files/ENCFF993HDF/@@download/ENCFF993HDF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683JQJ bigBed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF969XGP 13141059 ENCODE Processing Pipeline 889e7f82d38203fd244c9fd63e0a5eff https://www.encodeproject.org/files/ENCFF683JQJ/@@download/ENCFF683JQJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405THC bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF539DZV, ENCFF934ZXS 6761225 ENCODE Processing Pipeline 6a639386832f854fc4686e6d0ce4893e https://www.encodeproject.org/files/ENCFF405THC/@@download/ENCFF405THC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF222OFH bigBed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF405THC 13097864 ENCODE Processing Pipeline 3b058362d752c201da93f5955d2f2d92 https://www.encodeproject.org/files/ENCFF222OFH/@@download/ENCFF222OFH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF533KLE bigBed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF993HDF 12947102 ENCODE Processing Pipeline fa181dada05f8dd34406338403baf9f9 https://www.encodeproject.org/files/ENCFF533KLE/@@download/ENCFF533KLE.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF548VQF bed narrowPeak conservative idr thresholded peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF405THC, ENCFF969XGP, ENCFF993HDF 725834 ENCODE Processing Pipeline 7dbfc138ca154d2e498f06413289ff13 https://www.encodeproject.org/files/ENCFF548VQF/@@download/ENCFF548VQF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF869DWP bigBed narrowPeak conservative idr thresholded peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF548VQF 1428082 ENCODE Processing Pipeline 6d1baa559e3a08733967f8ba718d5dc2 https://www.encodeproject.org/files/ENCFF869DWP/@@download/ENCFF869DWP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF075MKV bed narrowPeak optimal idr thresholded peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF405THC, ENCFF969XGP, ENCFF993HDF 730939 ENCODE Processing Pipeline a789327db791c42e638a1637faa50dd0 https://www.encodeproject.org/files/ENCFF075MKV/@@download/ENCFF075MKV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF207BHB bigBed narrowPeak optimal idr thresholded peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF075MKV 1437727 ENCODE Processing Pipeline 830676e7e09196510a24903962c20c03 https://www.encodeproject.org/files/ENCFF207BHB/@@download/ENCFF207BHB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF735ORA bam unfiltered alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 100 ENCFF025FSC, ENCFF368UTN, ENCFF807MUK 4338705891 ENCODE Processing Pipeline c8ea2fd526bf51a6449c31a36078e28e https://www.encodeproject.org/files/ENCFF735ORA/@@download/ENCFF735ORA.bam hg19 released low read depth ENCFF875AHR bam unfiltered alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 100 ENCFF807MUK, ENCFF846BUV, ENCFF959OBE 4256701455 ENCODE Processing Pipeline a14a4f123bcb3acf63906ec6c9953373 https://www.encodeproject.org/files/ENCFF875AHR/@@download/ENCFF875AHR.bam hg19 released low read depth ENCFF959OBE fastq reads ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF846BUV 1902486672 Michael Snyder, Stanford f0cbb595cb4a7afa71885d12a2e9c560 SRA:SRR5111220 https://www.encodeproject.org/files/ENCFF959OBE/@@download/ENCFF959OBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF846BUV fastq reads ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF959OBE 1951179208 Michael Snyder, Stanford 61ff0400cc4b232197d255e48e3dc069 SRA:SRR5111220 https://www.encodeproject.org/files/ENCFF846BUV/@@download/ENCFF846BUV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF025FSC fastq reads ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF368UTN 2015177046 Michael Snyder, Stanford a62db6b75cc2d07bda173f3e635c7def SRA:SRR5111221 https://www.encodeproject.org/files/ENCFF025FSC/@@download/ENCFF025FSC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF368UTN fastq reads ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF025FSC 1971438642 Michael Snyder, Stanford c62d94961ca5e88fffc70c346fd382cf SRA:SRR5111221 https://www.encodeproject.org/files/ENCFF368UTN/@@download/ENCFF368UTN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF889BVE bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 100 ENCFF025FSC, ENCFF368UTN, ENCFF807MUK 3578347291 ENCODE Processing Pipeline 2ee2af2989e2607dba93c20650452757 https://www.encodeproject.org/files/ENCFF889BVE/@@download/ENCFF889BVE.bam hg19 released low read depth ENCFF361VCB bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 100 ENCFF807MUK, ENCFF846BUV, ENCFF959OBE 3535257082 ENCODE Processing Pipeline 906aa223b2e605e0fc576b1df4d616bb https://www.encodeproject.org/files/ENCFF361VCB/@@download/ENCFF361VCB.bam hg19 released low read depth ENCFF763IOR bigWig signal p-value ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF361VCB, ENCFF581ZJL 944982099 ENCODE Processing Pipeline 3f294b5eba644b75990900f81356eebb https://www.encodeproject.org/files/ENCFF763IOR/@@download/ENCFF763IOR.bigWig hg19 released low read depth ENCFF286JQI bigWig signal p-value ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF889BVE 907096776 ENCODE Processing Pipeline 20fcf8918b5bc951a2c72dd088cc19ef https://www.encodeproject.org/files/ENCFF286JQI/@@download/ENCFF286JQI.bigWig hg19 released low read depth ENCFF427EOD bigWig signal p-value ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF361VCB, ENCFF581ZJL, ENCFF889BVE 1750706206 ENCODE Processing Pipeline c95d750c93e5109e4ff934d4abf52621 https://www.encodeproject.org/files/ENCFF427EOD/@@download/ENCFF427EOD.bigWig hg19 released low read depth ENCFF002XRW bigWig fold change over control ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF361VCB, ENCFF581ZJL 1083540336 ENCODE Processing Pipeline 89dc9f6747058e54feba4285688ced7e https://www.encodeproject.org/files/ENCFF002XRW/@@download/ENCFF002XRW.bigWig hg19 released low read depth ENCFF802BZJ bigWig fold change over control ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF889BVE 1038832293 ENCODE Processing Pipeline 28321e3d39322716b83f695613b97223 https://www.encodeproject.org/files/ENCFF802BZJ/@@download/ENCFF802BZJ.bigWig hg19 released low read depth ENCFF935GAH bigWig fold change over control ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF361VCB, ENCFF581ZJL, ENCFF889BVE 1969438088 ENCODE Processing Pipeline 83494925f0d502647d0084122e9dc989 https://www.encodeproject.org/files/ENCFF935GAH/@@download/ENCFF935GAH.bigWig hg19 released low read depth ENCFF483NEI bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF361VCB, ENCFF581ZJL 6513282 ENCODE Processing Pipeline c770544017dc29caa52a24fae3ce7366 https://www.encodeproject.org/files/ENCFF483NEI/@@download/ENCFF483NEI.bed.gz hg19 released low read depth ENCFF546OLH bigBed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF788QDP 13203359 ENCODE Processing Pipeline 9a8816e4cc77fa231012fc003a0dd46e https://www.encodeproject.org/files/ENCFF546OLH/@@download/ENCFF546OLH.bigBed hg19 released low read depth ENCFF118YQO bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF889BVE 6858994 ENCODE Processing Pipeline 7763099fa0d7ef87e37db04101e1b836 https://www.encodeproject.org/files/ENCFF118YQO/@@download/ENCFF118YQO.bed.gz hg19 released low read depth ENCFF496FNH bed narrowPeak conservative idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF118YQO, ENCFF483NEI, ENCFF788QDP 232861 ENCODE Processing Pipeline f2edbc5020a623c3ea937596f67b847d https://www.encodeproject.org/files/ENCFF496FNH/@@download/ENCFF496FNH.bed.gz hg19 released low read depth ENCFF253NXR bed narrowPeak optimal idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF118YQO, ENCFF483NEI, ENCFF788QDP 323129 ENCODE Processing Pipeline ce16e91b56c848b604565d6e0c378f09 https://www.encodeproject.org/files/ENCFF253NXR/@@download/ENCFF253NXR.bed.gz hg19 released low read depth ENCFF243UIW bigBed narrowPeak optimal idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF253NXR 690468 ENCODE Processing Pipeline 127493dc3718f801c91cb9c1cac5eb03 https://www.encodeproject.org/files/ENCFF243UIW/@@download/ENCFF243UIW.bigBed hg19 released low read depth ENCFF788QDP bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF361VCB, ENCFF581ZJL, ENCFF889BVE 7227272 ENCODE Processing Pipeline 03a6c1c79824a0d64677b31384f15103 https://www.encodeproject.org/files/ENCFF788QDP/@@download/ENCFF788QDP.bed.gz hg19 released low read depth ENCFF205DLS bigBed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF483NEI 13421177 ENCODE Processing Pipeline 612e4f966cac28a500712ff4ced65b2b https://www.encodeproject.org/files/ENCFF205DLS/@@download/ENCFF205DLS.bigBed hg19 released low read depth ENCFF728PSA bigBed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF118YQO 13289028 ENCODE Processing Pipeline 1d396d5af7875e497fd37b0a62eb17ff https://www.encodeproject.org/files/ENCFF728PSA/@@download/ENCFF728PSA.bigBed hg19 released low read depth ENCFF053QEX bigBed narrowPeak conservative idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF496FNH 544230 ENCODE Processing Pipeline f9de4a3089bfa502be29786f74e5e53c https://www.encodeproject.org/files/ENCFF053QEX/@@download/ENCFF053QEX.bigBed hg19 released low read depth ENCFF685DTH bam unfiltered alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 100 ENCFF025FSC, ENCFF368UTN, ENCFF643CGH 4342923965 ENCODE Processing Pipeline 2b53ce7b96023a5830b9cebf21533e96 https://www.encodeproject.org/files/ENCFF685DTH/@@download/ENCFF685DTH.bam GRCh38 released low read depth ENCFF527NNL bam unfiltered alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 100 ENCFF643CGH, ENCFF846BUV, ENCFF959OBE 4262234179 ENCODE Processing Pipeline d3b0a5533ec7cd882d5a924540d1af51 https://www.encodeproject.org/files/ENCFF527NNL/@@download/ENCFF527NNL.bam GRCh38 released low read depth ENCFF122RSM bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 100 ENCFF643CGH, ENCFF846BUV, ENCFF959OBE 3536898643 ENCODE Processing Pipeline ec56b9a63fe9bfec9f6a94178b5d0609 https://www.encodeproject.org/files/ENCFF122RSM/@@download/ENCFF122RSM.bam GRCh38 released low read depth ENCFF450TNG bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 100 ENCFF025FSC, ENCFF368UTN, ENCFF643CGH 3580481332 ENCODE Processing Pipeline ac68aeffc27e2d8a6308a406c8393c24 https://www.encodeproject.org/files/ENCFF450TNG/@@download/ENCFF450TNG.bam GRCh38 released low read depth ENCFF134HWX bigWig signal p-value ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF122RSM, ENCFF910IKB 1062042707 ENCODE Processing Pipeline cad4ce41bc0c1519a3063ceb8add5621 https://www.encodeproject.org/files/ENCFF134HWX/@@download/ENCFF134HWX.bigWig GRCh38 released low read depth ENCFF646WVI bigWig signal p-value ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF450TNG 1001557839 ENCODE Processing Pipeline cd1c925f08f8ced9a0dec1ad8c41b634 https://www.encodeproject.org/files/ENCFF646WVI/@@download/ENCFF646WVI.bigWig GRCh38 released low read depth ENCFF244IJZ bigWig signal p-value ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF122RSM, ENCFF227IZS, ENCFF450TNG, ENCFF910IKB 1766034564 ENCODE Processing Pipeline 0fa7357edd11f8ef470d18df76126160 https://www.encodeproject.org/files/ENCFF244IJZ/@@download/ENCFF244IJZ.bigWig GRCh38 released low read depth ENCFF316PRE bigWig fold change over control ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF122RSM, ENCFF910IKB 1086446816 ENCODE Processing Pipeline cf91ea72b0d3d556beffd9742e9c4eb9 https://www.encodeproject.org/files/ENCFF316PRE/@@download/ENCFF316PRE.bigWig GRCh38 released low read depth ENCFF329AOV bigWig fold change over control ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF450TNG 1040550318 ENCODE Processing Pipeline 56a9a2e924a0a9d00f1dcca334ff59fa https://www.encodeproject.org/files/ENCFF329AOV/@@download/ENCFF329AOV.bigWig GRCh38 released low read depth ENCFF706ZWX bigWig fold change over control ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF122RSM, ENCFF227IZS, ENCFF450TNG, ENCFF910IKB 1971042974 ENCODE Processing Pipeline 18c69dd0672c7f66d216fc0c3ea1efdb https://www.encodeproject.org/files/ENCFF706ZWX/@@download/ENCFF706ZWX.bigWig GRCh38 released low read depth ENCFF547YAA bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF122RSM, ENCFF910IKB 6375691 ENCODE Processing Pipeline 23e09b5d55164430a3beff2f17bfc46e https://www.encodeproject.org/files/ENCFF547YAA/@@download/ENCFF547YAA.bed.gz GRCh38 released low read depth ENCFF155JOD bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF450TNG 6758053 ENCODE Processing Pipeline ff4074cf18755b7000d86ad7e6249d41 https://www.encodeproject.org/files/ENCFF155JOD/@@download/ENCFF155JOD.bed.gz GRCh38 released low read depth ENCFF935ZVZ bigBed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF547YAA 13430108 ENCODE Processing Pipeline 7842f538578cbf547b62485e2860fb00 https://www.encodeproject.org/files/ENCFF935ZVZ/@@download/ENCFF935ZVZ.bigBed GRCh38 released low read depth ENCFF804CZV bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF122RSM, ENCFF227IZS, ENCFF450TNG, ENCFF910IKB 7204235 ENCODE Processing Pipeline 24799fff7c9436bae5bbe8b2d828cc26 https://www.encodeproject.org/files/ENCFF804CZV/@@download/ENCFF804CZV.bed.gz GRCh38 released low read depth ENCFF067RNH bigBed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF155JOD 13298028 ENCODE Processing Pipeline 7d9a8f0786f196def33d5067365e14dc https://www.encodeproject.org/files/ENCFF067RNH/@@download/ENCFF067RNH.bigBed GRCh38 released low read depth ENCFF861SCT bigBed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF804CZV 13216296 ENCODE Processing Pipeline acd83bf9281fbdc045df50ffa2dbc7fd https://www.encodeproject.org/files/ENCFF861SCT/@@download/ENCFF861SCT.bigBed GRCh38 released low read depth ENCFF148GRM bed narrowPeak conservative idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF155JOD, ENCFF419RSJ, ENCFF547YAA, ENCFF804CZV 233795 ENCODE Processing Pipeline 1dcb125f70b6baadb1ccedb1f0895941 https://www.encodeproject.org/files/ENCFF148GRM/@@download/ENCFF148GRM.bed.gz GRCh38 released low read depth ENCFF908ZLN bed narrowPeak optimal idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF155JOD, ENCFF419RSJ, ENCFF547YAA, ENCFF804CZV 325836 ENCODE Processing Pipeline 2613b9d76c067f199852593f8ae62cfb https://www.encodeproject.org/files/ENCFF908ZLN/@@download/ENCFF908ZLN.bed.gz GRCh38 released low read depth ENCFF328FWW bigBed narrowPeak conservative idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF148GRM 547439 ENCODE Processing Pipeline da083165b4458580b77b6bd7ad49e37f https://www.encodeproject.org/files/ENCFF328FWW/@@download/ENCFF328FWW.bigBed GRCh38 released low read depth ENCFF363FFJ bigBed narrowPeak optimal idr thresholded peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF908ZLN 697281 ENCODE Processing Pipeline db433485c5bc9134942c87028a013157 https://www.encodeproject.org/files/ENCFF363FFJ/@@download/ENCFF363FFJ.bigBed GRCh38 released low read depth ENCFF452YKY fastq reads ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF833EAO 3086681120 Michael Snyder, Stanford c4a735fd6508ec3ea3dd156cfb9f92a1 https://www.encodeproject.org/files/ENCFF452YKY/@@download/ENCFF452YKY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released experiment not submitted to GEO partially characterized antibody ENCFF827LCX fastq reads ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF696QAK 3478300822 Michael Snyder, Stanford 30cfd9c08ec5009812e22c98aed6cd93 https://www.encodeproject.org/files/ENCFF827LCX/@@download/ENCFF827LCX.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released experiment not submitted to GEO partially characterized antibody ENCFF696QAK fastq reads ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF827LCX 3835350080 Michael Snyder, Stanford a0bc39c81a67a849f2f0532ade715f98 https://www.encodeproject.org/files/ENCFF696QAK/@@download/ENCFF696QAK.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released experiment not submitted to GEO partially characterized antibody ENCFF833EAO fastq reads ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF452YKY 2819631272 Michael Snyder, Stanford 29d1d6a654ea007abea0ff1710b5114b https://www.encodeproject.org/files/ENCFF833EAO/@@download/ENCFF833EAO.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released experiment not submitted to GEO partially characterized antibody ENCFF867OBK bam unfiltered alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF452YKY, ENCFF807MUK, ENCFF833EAO 5799556792 ENCODE Processing Pipeline 6dd39c5adc77f06a4331e12c16295f45 https://www.encodeproject.org/files/ENCFF867OBK/@@download/ENCFF867OBK.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF979TXQ bam unfiltered alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF452YKY, ENCFF643CGH, ENCFF833EAO 5806772599 ENCODE Processing Pipeline 1afe455731d2eeb2f2f1516fd3470514 https://www.encodeproject.org/files/ENCFF979TXQ/@@download/ENCFF979TXQ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF134JUN bam unfiltered alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF696QAK, ENCFF827LCX 7164140590 ENCODE Processing Pipeline 13e2b21dbdf54000616f7a1e9ba33dcb https://www.encodeproject.org/files/ENCFF134JUN/@@download/ENCFF134JUN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF809QWF bam unfiltered alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF696QAK, ENCFF807MUK, ENCFF827LCX 7155687766 ENCODE Processing Pipeline d22a45f7f7a7b0040ed529184adac9a0 https://www.encodeproject.org/files/ENCFF809QWF/@@download/ENCFF809QWF.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF924YHD bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF452YKY, ENCFF643CGH, ENCFF833EAO 4629594085 ENCODE Processing Pipeline dc43918953373224ee276804448c14e7 https://www.encodeproject.org/files/ENCFF924YHD/@@download/ENCFF924YHD.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF576JOB bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF452YKY, ENCFF807MUK, ENCFF833EAO 4625809239 ENCODE Processing Pipeline 2e08e8b5eb91abb85f09d0e6f97a8b27 https://www.encodeproject.org/files/ENCFF576JOB/@@download/ENCFF576JOB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF395KST bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF696QAK, ENCFF807MUK, ENCFF827LCX 5784087469 ENCODE Processing Pipeline 42f500d35f08b324c0a62412d080a120 https://www.encodeproject.org/files/ENCFF395KST/@@download/ENCFF395KST.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF942XRZ bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF696QAK, ENCFF827LCX 5788990216 ENCODE Processing Pipeline 8e5d84773c00b185e95a1cf134b39027 https://www.encodeproject.org/files/ENCFF942XRZ/@@download/ENCFF942XRZ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF879VSI bigWig signal p-value ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF395KST, ENCFF834TUP 1797257925 ENCODE Processing Pipeline 7ca5de068a61c9473f20f7e3ec9a2f0f https://www.encodeproject.org/files/ENCFF879VSI/@@download/ENCFF879VSI.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF231VBI bigWig signal p-value ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF576JOB 1338450612 ENCODE Processing Pipeline 1610bc7036084ed4e62a28ef9dd35f46 https://www.encodeproject.org/files/ENCFF231VBI/@@download/ENCFF231VBI.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF544PFY bigWig signal p-value ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF395KST, ENCFF576JOB, ENCFF834TUP 2152726796 ENCODE Processing Pipeline 9395fbd9445faf9c03b3322667265811 https://www.encodeproject.org/files/ENCFF544PFY/@@download/ENCFF544PFY.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF888IZC bigWig fold change over control ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF395KST, ENCFF834TUP 1991866536 ENCODE Processing Pipeline 0faaf614b71afe16762c501045d3e934 https://www.encodeproject.org/files/ENCFF888IZC/@@download/ENCFF888IZC.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF945CSE bigWig fold change over control ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF576JOB 1418325867 ENCODE Processing Pipeline 053a742e575b41f6a9da8f7d7235049c https://www.encodeproject.org/files/ENCFF945CSE/@@download/ENCFF945CSE.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF306QAA bigWig fold change over control ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF395KST, ENCFF576JOB, ENCFF834TUP 2473811404 ENCODE Processing Pipeline 5b4ea2dfbc936df34f8fc19fe3fa63a9 https://www.encodeproject.org/files/ENCFF306QAA/@@download/ENCFF306QAA.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF154QJU bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF395KST, ENCFF834TUP 7279922 ENCODE Processing Pipeline be6739a8f963d3d5d5c3b71cd6711c23 https://www.encodeproject.org/files/ENCFF154QJU/@@download/ENCFF154QJU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF369BMF bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF576JOB 7159010 ENCODE Processing Pipeline 6bbd56ec9d30ee5b868b01dad1cd4061 https://www.encodeproject.org/files/ENCFF369BMF/@@download/ENCFF369BMF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF942IAL bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF395KST, ENCFF576JOB, ENCFF834TUP 7305116 ENCODE Processing Pipeline 773b1d90a2492e276a9e719e409a444c https://www.encodeproject.org/files/ENCFF942IAL/@@download/ENCFF942IAL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF946JXP bigBed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF154QJU 13005350 ENCODE Processing Pipeline 1b2442899a1bdec2d2a5fc82c854e615 https://www.encodeproject.org/files/ENCFF946JXP/@@download/ENCFF946JXP.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF377RDJ bigBed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF369BMF 13028606 ENCODE Processing Pipeline 8c088c2ce2c4de18717f9fa7d93e15a7 https://www.encodeproject.org/files/ENCFF377RDJ/@@download/ENCFF377RDJ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF714EKC bigBed narrowPeak conservative idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF815MOP 1055886 ENCODE Processing Pipeline 65d7c64e3b5b338575309deaaf599f5b https://www.encodeproject.org/files/ENCFF714EKC/@@download/ENCFF714EKC.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF237MEA bigBed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF942IAL 12882607 ENCODE Processing Pipeline 50ff2831cc406a4cfefb3091744389c0 https://www.encodeproject.org/files/ENCFF237MEA/@@download/ENCFF237MEA.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF815MOP bed narrowPeak conservative idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF154QJU, ENCFF369BMF, ENCFF942IAL 451957 ENCODE Processing Pipeline 4eb81cbca355973f9ee49cc6d1ffebab https://www.encodeproject.org/files/ENCFF815MOP/@@download/ENCFF815MOP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF126BCK bed narrowPeak optimal idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF154QJU, ENCFF369BMF, ENCFF942IAL 511446 ENCODE Processing Pipeline 8d0ce916d80715cec4752c1a6f79bd30 https://www.encodeproject.org/files/ENCFF126BCK/@@download/ENCFF126BCK.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF271RQC bigBed narrowPeak optimal idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF126BCK 1162183 ENCODE Processing Pipeline e205110069e928a954868950b2a6f264 https://www.encodeproject.org/files/ENCFF271RQC/@@download/ENCFF271RQC.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF284CIW bigWig signal p-value ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF942XRZ 1888512691 ENCODE Processing Pipeline bc161677a59a1a78374595cd33addd74 https://www.encodeproject.org/files/ENCFF284CIW/@@download/ENCFF284CIW.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF662GMS bigWig signal p-value ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF790TAN, ENCFF924YHD 1216282722 ENCODE Processing Pipeline fdef41eb71e958684c41831a0681cd6d https://www.encodeproject.org/files/ENCFF662GMS/@@download/ENCFF662GMS.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF398IIR bigWig signal p-value ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF712WXB, ENCFF790TAN, ENCFF924YHD, ENCFF942XRZ 1941122438 ENCODE Processing Pipeline dfc1826c3630ef2eefff16d6be26553d https://www.encodeproject.org/files/ENCFF398IIR/@@download/ENCFF398IIR.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF468TWU bigWig fold change over control ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF942XRZ 2011978860 ENCODE Processing Pipeline a50863165f424c06cce41212079207c4 https://www.encodeproject.org/files/ENCFF468TWU/@@download/ENCFF468TWU.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF859PBF bigWig fold change over control ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF790TAN, ENCFF924YHD 1406165789 ENCODE Processing Pipeline cbcce0546479da87b8305f17161493be https://www.encodeproject.org/files/ENCFF859PBF/@@download/ENCFF859PBF.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF015ZEB bigWig fold change over control ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF712WXB, ENCFF790TAN, ENCFF924YHD, ENCFF942XRZ 2496788061 ENCODE Processing Pipeline 24a3a18273b89a84a2c0b43c8dbd38b4 https://www.encodeproject.org/files/ENCFF015ZEB/@@download/ENCFF015ZEB.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF574QJU bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF942XRZ 7251274 ENCODE Processing Pipeline 36233bebb2b277190dd5be613347d2f9 https://www.encodeproject.org/files/ENCFF574QJU/@@download/ENCFF574QJU.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF574QMQ bigBed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF574QJU 12990140 ENCODE Processing Pipeline 8ed5caabf18a5b2ac45aaad50980e7c7 https://www.encodeproject.org/files/ENCFF574QMQ/@@download/ENCFF574QMQ.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF137CIP bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF790TAN, ENCFF924YHD 7119772 ENCODE Processing Pipeline b5c4fb5ae985342f6439b148bf1bdf97 https://www.encodeproject.org/files/ENCFF137CIP/@@download/ENCFF137CIP.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF155ICS bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF712WXB, ENCFF790TAN, ENCFF924YHD, ENCFF942XRZ 7310382 ENCODE Processing Pipeline 06ce6cabf8960e9f8b97410cf3eac954 https://www.encodeproject.org/files/ENCFF155ICS/@@download/ENCFF155ICS.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF058FJN bed narrowPeak conservative idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF137CIP, ENCFF155ICS, ENCFF419RSJ, ENCFF574QJU 452519 ENCODE Processing Pipeline e19125ab09059fb0a8dbd426ba772eb4 https://www.encodeproject.org/files/ENCFF058FJN/@@download/ENCFF058FJN.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF335FAM bigBed narrowPeak conservative idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF058FJN 1060091 ENCODE Processing Pipeline 6090db3e90e4fdd8d065b6bd4de0d554 https://www.encodeproject.org/files/ENCFF335FAM/@@download/ENCFF335FAM.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF634WMB bigBed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF137CIP 13041686 ENCODE Processing Pipeline f3f3d6aadbde600e97e93cd9793e9a15 https://www.encodeproject.org/files/ENCFF634WMB/@@download/ENCFF634WMB.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF177OTF bigBed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF155ICS 12894104 ENCODE Processing Pipeline d754968604d0c5cf2bbc944eff792b3a https://www.encodeproject.org/files/ENCFF177OTF/@@download/ENCFF177OTF.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF678VPQ bed narrowPeak optimal idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF137CIP, ENCFF155ICS, ENCFF419RSJ, ENCFF574QJU 504173 ENCODE Processing Pipeline 7fd98e2b51c3f809d13313460b8c418b https://www.encodeproject.org/files/ENCFF678VPQ/@@download/ENCFF678VPQ.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF965VTE bigBed narrowPeak optimal idr thresholded peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF678VPQ 1154446 ENCODE Processing Pipeline 0aa3a64f0bc41c5d84c84df359279ab7 https://www.encodeproject.org/files/ENCFF965VTE/@@download/ENCFF965VTE.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF724TVK fastq reads ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 1 ENCFF835LIJ 2308593198 Michael Snyder, Stanford b1afaef44c81f5c3685aacb05875b32a SRA:SRR6213712 https://www.encodeproject.org/files/ENCFF724TVK/@@download/ENCFF724TVK.fastq.gz Illumina HiSeq 4000 /files/ENCFF279NIP/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF835LIJ fastq reads ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 2 ENCFF724TVK 2591975150 Michael Snyder, Stanford 98ba04fafc729ebc260f69330d4bf199 SRA:SRR6213712 https://www.encodeproject.org/files/ENCFF835LIJ/@@download/ENCFF835LIJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF838ENS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF249JKZ bam unfiltered alignments ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF724TVK, ENCFF807MUK, ENCFF835LIJ 4828723738 ENCODE Processing Pipeline b277dfd1a2122ba200a4ce0db6352a13 https://www.encodeproject.org/files/ENCFF249JKZ/@@download/ENCFF249JKZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF725LQV bam alignments ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF724TVK, ENCFF807MUK, ENCFF835LIJ 3886754462 ENCODE Processing Pipeline 7b84e280c41e7b522c7d2208b7bf9f36 https://www.encodeproject.org/files/ENCFF725LQV/@@download/ENCFF725LQV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF470UEV bam unfiltered alignments ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF643CGH, ENCFF724TVK, ENCFF835LIJ 4836763255 ENCODE Processing Pipeline 14843c1567200bfb7577483c5665c3ec https://www.encodeproject.org/files/ENCFF470UEV/@@download/ENCFF470UEV.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF070DUF bam alignments ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF643CGH, ENCFF724TVK, ENCFF835LIJ 3890383056 ENCODE Processing Pipeline 39b6bdc6f01c0081732e4cfc77d40625 https://www.encodeproject.org/files/ENCFF070DUF/@@download/ENCFF070DUF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF924SWZ bigWig signal p-value ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF725LQV, ENCFF798VAD 1241129173 ENCODE Processing Pipeline f8f5f39d5b04d81066efd99d53b8d511 https://www.encodeproject.org/files/ENCFF924SWZ/@@download/ENCFF924SWZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF271JEQ bigWig fold change over control ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF725LQV, ENCFF798VAD 1252682122 ENCODE Processing Pipeline 18d94fe27d7295541fcfaf484d6827e6 https://www.encodeproject.org/files/ENCFF271JEQ/@@download/ENCFF271JEQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF333FVM bed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF725LQV, ENCFF798VAD 6421382 ENCODE Processing Pipeline e2a6e8457cc22006e1706794d3c4662d https://www.encodeproject.org/files/ENCFF333FVM/@@download/ENCFF333FVM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF522DLJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF001TDO, ENCFF333FVM 431594 ENCODE Processing Pipeline ef4b643af033d691d0255659c1e4f1b0 https://www.encodeproject.org/files/ENCFF522DLJ/@@download/ENCFF522DLJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF916VHX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF522DLJ 800333 ENCODE Processing Pipeline a52cbf9a6bae16c27ce9889bb6f5a529 https://www.encodeproject.org/files/ENCFF916VHX/@@download/ENCFF916VHX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF905ETQ bigBed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF333FVM 11518028 ENCODE Processing Pipeline 7367404d7de99337a95df6f6fc707228 https://www.encodeproject.org/files/ENCFF905ETQ/@@download/ENCFF905ETQ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF932OWO bigWig fold change over control ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF070DUF, ENCFF484UEF 1255588226 ENCODE Processing Pipeline 75c3dce3fd9f10387f4c0d575f0bfb36 https://www.encodeproject.org/files/ENCFF932OWO/@@download/ENCFF932OWO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF998PSY bigWig signal p-value ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF070DUF, ENCFF484UEF 1107075441 ENCODE Processing Pipeline cf23e55edc216668f2681551efd0be81 https://www.encodeproject.org/files/ENCFF998PSY/@@download/ENCFF998PSY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF858QSY bed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF070DUF, ENCFF484UEF 6409989 ENCODE Processing Pipeline 35096fae2a7231d7f9c11dfa34b65512 https://www.encodeproject.org/files/ENCFF858QSY/@@download/ENCFF858QSY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF202NVV bigBed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF858QSY 11541377 ENCODE Processing Pipeline e1d88dcab19fb4c809801c2d6a43d5ad https://www.encodeproject.org/files/ENCFF202NVV/@@download/ENCFF202NVV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF006YGI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF419RSJ, ENCFF858QSY 431185 ENCODE Processing Pipeline 175836271f8d7f016796ceec3fbab3db https://www.encodeproject.org/files/ENCFF006YGI/@@download/ENCFF006YGI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF035NEU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF006YGI 802192 ENCODE Processing Pipeline 3464bc88fa6e94c8b0244518de09f52e https://www.encodeproject.org/files/ENCFF035NEU/@@download/ENCFF035NEU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000QLP bam alignments ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMC 873738343 Richard Myers, HAIB 870c44acc9325d793f38fa13df80b7c8 https://www.encodeproject.org/files/ENCFF000QLP/@@download/ENCFF000QLP.bam hg19 released biological replicates with identical biosample ENCFF000QLQ bigBed broadPeak peaks ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMM 195085 Richard Myers, HAIB 36d47da46eae98870ed67647332bc2f4 https://www.encodeproject.org/files/ENCFF000QLQ/@@download/ENCFF000QLQ.bigBed hg19 released biological replicates with identical biosample ENCFF000QLR bigBed broadPeak peaks ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMO 108294 Richard Myers, HAIB 13c3388f64e908525d87af2e598097f0 https://www.encodeproject.org/files/ENCFF000QLR/@@download/ENCFF000QLR.bigBed hg19 released biological replicates with identical biosample ENCFF000QLS bam alignments ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QMF 2095251554 Richard Myers, HAIB 50406d0a538013cdd9f1b8c04360e304 https://www.encodeproject.org/files/ENCFF000QLS/@@download/ENCFF000QLS.bam hg19 released biological replicates with identical biosample ENCFF000QLU bigWig raw signal ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 252205041 Richard Myers, HAIB 6ffcdf5dbf99913a014e1986f424a912 https://www.encodeproject.org/files/ENCFF000QLU/@@download/ENCFF000QLU.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QLV bigWig raw signal ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 106985529 Richard Myers, HAIB 2b8a28e3c1ca437f865067d6fcfa1063 https://www.encodeproject.org/files/ENCFF000QLV/@@download/ENCFF000QLV.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QMC fastq reads ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 879791818 Richard Myers, HAIB 04c491291d2dbd3addd2d7387d56a859 https://www.encodeproject.org/files/ENCFF000QMC/@@download/ENCFF000QMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQK/ released biological replicates with identical biosample ENCFF000QMF fastq reads ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2152135117 Richard Myers, HAIB aa1e8cbff8930625d0cf278d9f12b1dd https://www.encodeproject.org/files/ENCFF000QMF/@@download/ENCFF000QMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMM bed broadPeak peaks ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 102030 Richard Myers, HAIB f52dfce10392d5c2f8c81662faeab536 https://www.encodeproject.org/files/ENCFF001UMM/@@download/ENCFF001UMM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UMO bed broadPeak peaks ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 30711 Richard Myers, HAIB f32caac445073abf5755a696baa9c561 https://www.encodeproject.org/files/ENCFF001UMO/@@download/ENCFF001UMO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF833EZX fastq reads ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF161HBP 3393856397 Michael Snyder, Stanford 20b748dc536afa0138be6abc6715560c SRA:SRR6214195 https://www.encodeproject.org/files/ENCFF833EZX/@@download/ENCFF833EZX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF119KHM fastq reads ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF776KZU 3059076082 Michael Snyder, Stanford bc53a82009c3aad3083dd995c4c96acc SRA:SRR6214196 https://www.encodeproject.org/files/ENCFF119KHM/@@download/ENCFF119KHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF161HBP fastq reads ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF833EZX 3436209144 Michael Snyder, Stanford e148972b357a8d91df736ce481ef8ba8 SRA:SRR6214195 https://www.encodeproject.org/files/ENCFF161HBP/@@download/ENCFF161HBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF776KZU fastq reads ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF119KHM 3011964140 Michael Snyder, Stanford 75bb09f9896ced24e22977ee1836726b SRA:SRR6214196 https://www.encodeproject.org/files/ENCFF776KZU/@@download/ENCFF776KZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF176PAY bam unfiltered alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 100 ENCFF119KHM, ENCFF643CGH, ENCFF776KZU 6635014417 ENCODE Processing Pipeline c2d586b917934ceb2ef7ebc3f771ef65 https://www.encodeproject.org/files/ENCFF176PAY/@@download/ENCFF176PAY.bam GRCh38 released ENCFF956FDB bam unfiltered alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 100 ENCFF119KHM, ENCFF776KZU, ENCFF807MUK 6622996503 ENCODE Processing Pipeline 5e4c1c1235c4b0f140d14619dd5db49f https://www.encodeproject.org/files/ENCFF956FDB/@@download/ENCFF956FDB.bam hg19 released ENCFF661TCZ bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 100 ENCFF119KHM, ENCFF643CGH, ENCFF776KZU 5545495910 ENCODE Processing Pipeline c4003ae9fce0612bec6caa921d881701 https://www.encodeproject.org/files/ENCFF661TCZ/@@download/ENCFF661TCZ.bam GRCh38 released ENCFF516LSB bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 100 ENCFF119KHM, ENCFF776KZU, ENCFF807MUK 5537027386 ENCODE Processing Pipeline c61e780d67bf0816c017c25aa567995e https://www.encodeproject.org/files/ENCFF516LSB/@@download/ENCFF516LSB.bam hg19 released ENCFF438QZX bam unfiltered alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 100 ENCFF161HBP, ENCFF643CGH, ENCFF833EZX 7351508201 ENCODE Processing Pipeline 8cebea6ac23548b5523959c722d9dcf0 https://www.encodeproject.org/files/ENCFF438QZX/@@download/ENCFF438QZX.bam GRCh38 released ENCFF909QCV bam unfiltered alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 100 ENCFF161HBP, ENCFF807MUK, ENCFF833EZX 7341050077 ENCODE Processing Pipeline 11b05dfad3a5e40e1d22b1e0ee1c0f50 https://www.encodeproject.org/files/ENCFF909QCV/@@download/ENCFF909QCV.bam hg19 released ENCFF445SJA bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 100 ENCFF161HBP, ENCFF807MUK, ENCFF833EZX 6058609803 ENCODE Processing Pipeline 360f721b16701dd7b46f4d30cf481341 https://www.encodeproject.org/files/ENCFF445SJA/@@download/ENCFF445SJA.bam hg19 released ENCFF215SUP bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 100 ENCFF161HBP, ENCFF643CGH, ENCFF833EZX 6067687084 ENCODE Processing Pipeline ea4df80b1ec3e7d6e9d8aa8acb086536 https://www.encodeproject.org/files/ENCFF215SUP/@@download/ENCFF215SUP.bam GRCh38 released ENCFF360ATI bigWig signal p-value ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF215SUP, ENCFF291AFY, ENCFF426RDP 1527214030 ENCODE Processing Pipeline e46c55bb61f303896c5f60a154a676e0 https://www.encodeproject.org/files/ENCFF360ATI/@@download/ENCFF360ATI.bigWig GRCh38 released ENCFF932VVN bigWig signal p-value ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF215SUP, ENCFF291AFY, ENCFF426RDP, ENCFF661TCZ 2239781214 ENCODE Processing Pipeline 544e183ed607f5d164297194c8772a48 https://www.encodeproject.org/files/ENCFF932VVN/@@download/ENCFF932VVN.bigWig GRCh38 released ENCFF258ZVN bed narrowPeak optimal idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF067KGJ, ENCFF293GRH, ENCFF419RSJ, ENCFF625ROS 126715 ENCODE Processing Pipeline 43fbda592b2f51c18d67c66fef6c0e25 https://www.encodeproject.org/files/ENCFF258ZVN/@@download/ENCFF258ZVN.bed.gz GRCh38 released ENCFF724VRV bigBed narrowPeak optimal idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF258ZVN 290993 ENCODE Processing Pipeline 32a5da7028d2bc9ccfe12b5f04b1906e https://www.encodeproject.org/files/ENCFF724VRV/@@download/ENCFF724VRV.bigBed GRCh38 released ENCFF861SOE bigWig signal p-value ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF661TCZ 1326432785 ENCODE Processing Pipeline 3de3410a2175cf011a3f2c5ec3991f14 https://www.encodeproject.org/files/ENCFF861SOE/@@download/ENCFF861SOE.bigWig GRCh38 released ENCFF561WGQ bigWig fold change over control ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF661TCZ 1252211943 ENCODE Processing Pipeline 59d4360be165b01ba055d8265b87c075 https://www.encodeproject.org/files/ENCFF561WGQ/@@download/ENCFF561WGQ.bigWig GRCh38 released ENCFF610VCS bigWig fold change over control ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF215SUP, ENCFF291AFY, ENCFF426RDP, ENCFF661TCZ 2274867623 ENCODE Processing Pipeline a35358cf235f0e61a04fa0c554b6d65e https://www.encodeproject.org/files/ENCFF610VCS/@@download/ENCFF610VCS.bigWig GRCh38 released ENCFF067KGJ bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF215SUP, ENCFF291AFY, ENCFF426RDP, ENCFF661TCZ 7203280 ENCODE Processing Pipeline cc8eb45a76a4e29f8a9dbb25a594f8e6 https://www.encodeproject.org/files/ENCFF067KGJ/@@download/ENCFF067KGJ.bed.gz GRCh38 released ENCFF017BOE bigBed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF293GRH 13319029 ENCODE Processing Pipeline 68a408e30cdb08396c00b1b5178540ef https://www.encodeproject.org/files/ENCFF017BOE/@@download/ENCFF017BOE.bigBed GRCh38 released ENCFF242QFV bigBed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF625ROS 11095987 ENCODE Processing Pipeline d5f49158ae0715da6b4765f2c1d70272 https://www.encodeproject.org/files/ENCFF242QFV/@@download/ENCFF242QFV.bigBed GRCh38 released ENCFF007BEA bigWig fold change over control ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF215SUP, ENCFF291AFY, ENCFF426RDP 1710765959 ENCODE Processing Pipeline 00c52ed3b9c238323225e583ed25e4ed https://www.encodeproject.org/files/ENCFF007BEA/@@download/ENCFF007BEA.bigWig GRCh38 released ENCFF293GRH bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF215SUP, ENCFF291AFY, ENCFF426RDP 6875019 ENCODE Processing Pipeline ae0a2d77ec10cd23b3df766a709fd613 https://www.encodeproject.org/files/ENCFF293GRH/@@download/ENCFF293GRH.bed.gz GRCh38 released ENCFF625ROS bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF661TCZ 6310347 ENCODE Processing Pipeline 33bc885f62ebb5155ffa4aa9623f0cc7 https://www.encodeproject.org/files/ENCFF625ROS/@@download/ENCFF625ROS.bed.gz GRCh38 released ENCFF869FRH bigBed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF067KGJ 13244836 ENCODE Processing Pipeline 213537a8c6de58400dba522385970067 https://www.encodeproject.org/files/ENCFF869FRH/@@download/ENCFF869FRH.bigBed GRCh38 released ENCFF517VDG bed narrowPeak conservative idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF067KGJ, ENCFF293GRH, ENCFF419RSJ, ENCFF625ROS 80625 ENCODE Processing Pipeline 487427e065bce402e2af8a70f7e9b270 https://www.encodeproject.org/files/ENCFF517VDG/@@download/ENCFF517VDG.bed.gz GRCh38 released ENCFF611UAL bigBed narrowPeak conservative idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF517VDG 218952 ENCODE Processing Pipeline 9b04d463ab9fe9ed27a1f4ef4e143562 https://www.encodeproject.org/files/ENCFF611UAL/@@download/ENCFF611UAL.bigBed GRCh38 released ENCFF362SAR bigWig fold change over control ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF445SJA, ENCFF516LSB, ENCFF583FAG 2248938759 ENCODE Processing Pipeline 3ff6005a53d8e7e1c502ef19b8355d09 https://www.encodeproject.org/files/ENCFF362SAR/@@download/ENCFF362SAR.bigWig hg19 released ENCFF848HWL bigWig signal p-value ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF445SJA, ENCFF583FAG 1470899252 ENCODE Processing Pipeline 4a83ef4633f12b0634530abcffb1c3f0 https://www.encodeproject.org/files/ENCFF848HWL/@@download/ENCFF848HWL.bigWig hg19 released ENCFF664ZHD bigWig fold change over control ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF445SJA, ENCFF583FAG 1707977956 ENCODE Processing Pipeline 3484571d1ba62029a36b3c535fd90c40 https://www.encodeproject.org/files/ENCFF664ZHD/@@download/ENCFF664ZHD.bigWig hg19 released ENCFF142YKC bigWig signal p-value ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF516LSB 999703796 ENCODE Processing Pipeline 409b78c6ad5b5152cd4ff6eb22f134b0 https://www.encodeproject.org/files/ENCFF142YKC/@@download/ENCFF142YKC.bigWig hg19 released ENCFF158NYJ bigBed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF497GTZ 13225403 ENCODE Processing Pipeline 3250c60b575370eb61db5b21df9b7d2f https://www.encodeproject.org/files/ENCFF158NYJ/@@download/ENCFF158NYJ.bigBed hg19 released ENCFF956LMS bed narrowPeak optimal idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF050ZNZ, ENCFF497GTZ, ENCFF706VXW 121082 ENCODE Processing Pipeline 6ca14a532bb29b2041757fdb0d29a730 https://www.encodeproject.org/files/ENCFF956LMS/@@download/ENCFF956LMS.bed.gz hg19 released ENCFF522YXV bigWig signal p-value ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF445SJA, ENCFF516LSB, ENCFF583FAG 1972245531 ENCODE Processing Pipeline 2e63709470c16480203ad07567522dcf https://www.encodeproject.org/files/ENCFF522YXV/@@download/ENCFF522YXV.bigWig hg19 released ENCFF050ZNZ bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF516LSB 6303804 ENCODE Processing Pipeline cde6af2b9b910a015bb46dc56ffd38d8 https://www.encodeproject.org/files/ENCFF050ZNZ/@@download/ENCFF050ZNZ.bed.gz hg19 released ENCFF397MNA bigBed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF706VXW 13296315 ENCODE Processing Pipeline 60749f0cd3cbcb46baf1281866d05a98 https://www.encodeproject.org/files/ENCFF397MNA/@@download/ENCFF397MNA.bigBed hg19 released ENCFF032KEL bigBed narrowPeak conservative idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF162IQJ 210600 ENCODE Processing Pipeline df868b8edebf4c87aa3e0e833728354a https://www.encodeproject.org/files/ENCFF032KEL/@@download/ENCFF032KEL.bigBed hg19 released ENCFF098RUU bigBed narrowPeak optimal idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF956LMS 279245 ENCODE Processing Pipeline 363a88d47e75313216eab1814cc981a5 https://www.encodeproject.org/files/ENCFF098RUU/@@download/ENCFF098RUU.bigBed hg19 released ENCFF839BEL bigWig fold change over control ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF516LSB 1256681519 ENCODE Processing Pipeline 9ade666a02a354009940118e65e2121a https://www.encodeproject.org/files/ENCFF839BEL/@@download/ENCFF839BEL.bigWig hg19 released ENCFF497GTZ bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF445SJA, ENCFF516LSB, ENCFF583FAG 7194874 ENCODE Processing Pipeline 1bd0389fda748a6deb5a6230fc4181d0 https://www.encodeproject.org/files/ENCFF497GTZ/@@download/ENCFF497GTZ.bed.gz hg19 released ENCFF303LPG bigBed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF050ZNZ 11077357 ENCODE Processing Pipeline b4fcfe001d2762483d018cb790db3860 https://www.encodeproject.org/files/ENCFF303LPG/@@download/ENCFF303LPG.bigBed hg19 released ENCFF706VXW bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF445SJA, ENCFF583FAG 6867366 ENCODE Processing Pipeline 3d21eb7cc96e078e4d344741e79da651 https://www.encodeproject.org/files/ENCFF706VXW/@@download/ENCFF706VXW.bed.gz hg19 released ENCFF162IQJ bed narrowPeak conservative idr thresholded peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF050ZNZ, ENCFF497GTZ, ENCFF706VXW 77278 ENCODE Processing Pipeline 8a21ebf7ae9beae81419c6e3e6704b8f https://www.encodeproject.org/files/ENCFF162IQJ/@@download/ENCFF162IQJ.bed.gz hg19 released ENCFF276DXN fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF659XQW 2602768069 Michael Snyder, Stanford 36791fc7711e9a0374f489503ee9a5fe https://www.encodeproject.org/files/ENCFF276DXN/@@download/ENCFF276DXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF060AFD fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF099MWU 2124592226 Michael Snyder, Stanford dbe86124a9af4e33860c7df49fdb28f4 https://www.encodeproject.org/files/ENCFF060AFD/@@download/ENCFF060AFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF099MWU fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF060AFD 2153666542 Michael Snyder, Stanford 893e9df649030a2109a406ce9a3e546d https://www.encodeproject.org/files/ENCFF099MWU/@@download/ENCFF099MWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF659XQW fastq reads ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF276DXN 2566307516 Michael Snyder, Stanford 87925945ac463479d167a1d0891c475b https://www.encodeproject.org/files/ENCFF659XQW/@@download/ENCFF659XQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF445ZWE bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF807MUK 4681623284 ENCODE Processing Pipeline 5efe792819dd13727a53ae4a2342f569 https://www.encodeproject.org/files/ENCFF445ZWE/@@download/ENCFF445ZWE.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF204LRJ bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF807MUK 3635858853 ENCODE Processing Pipeline cb6e06a4ebc4439e9862a9ce8bcb1996 https://www.encodeproject.org/files/ENCFF204LRJ/@@download/ENCFF204LRJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF361MVV bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF643CGH 3642777401 ENCODE Processing Pipeline 6091ef40b68d6eb4b7082acd2f436caf https://www.encodeproject.org/files/ENCFF361MVV/@@download/ENCFF361MVV.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF440WOD bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF643CGH 4687304321 ENCODE Processing Pipeline 23448b6b486b1aecc90b7ac38190ad53 https://www.encodeproject.org/files/ENCFF440WOD/@@download/ENCFF440WOD.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF575SRZ bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF659XQW, ENCFF807MUK 5562511245 ENCODE Processing Pipeline 3d787bdfd20b558211db76e901500bb8 https://www.encodeproject.org/files/ENCFF575SRZ/@@download/ENCFF575SRZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF758USJ bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF659XQW, ENCFF807MUK 4438992666 ENCODE Processing Pipeline 28418194534cc920e241c9c779f876fa https://www.encodeproject.org/files/ENCFF758USJ/@@download/ENCFF758USJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF552FJH bam unfiltered alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF643CGH, ENCFF659XQW 5566889946 ENCODE Processing Pipeline fc13c2ebc524da546be540842f6c6350 https://www.encodeproject.org/files/ENCFF552FJH/@@download/ENCFF552FJH.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF089SHL bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF643CGH, ENCFF659XQW 4445494153 ENCODE Processing Pipeline 8cbe4382d97774f7f7563732e729096f https://www.encodeproject.org/files/ENCFF089SHL/@@download/ENCFF089SHL.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF549HXP bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF089SHL, ENCFF574BGV 1104533021 ENCODE Processing Pipeline c0eda11aa8bdc61a4a90d4ed81bab479 https://www.encodeproject.org/files/ENCFF549HXP/@@download/ENCFF549HXP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF561BWI bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361MVV, ENCFF879YMO 5872338 ENCODE Processing Pipeline 6eb922549cac8e5fd92f8691463dba3f https://www.encodeproject.org/files/ENCFF561BWI/@@download/ENCFF561BWI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF987PGY bed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382WPK, ENCFF419RSJ, ENCFF561BWI, ENCFF829UQN 222127 ENCODE Processing Pipeline e281491560958b7e181c0b521a310f5e https://www.encodeproject.org/files/ENCFF987PGY/@@download/ENCFF987PGY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF837UBW bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089SHL, ENCFF361MVV, ENCFF574BGV, ENCFF879YMO 1805690528 ENCODE Processing Pipeline 1f629fb31f312e712bb34a08f88102bc https://www.encodeproject.org/files/ENCFF837UBW/@@download/ENCFF837UBW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF848LJL bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089SHL, ENCFF361MVV, ENCFF574BGV, ENCFF879YMO 2079194712 ENCODE Processing Pipeline 45c78641c1ea085a4d0e0b5b4d114ce2 https://www.encodeproject.org/files/ENCFF848LJL/@@download/ENCFF848LJL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF004ACP bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361MVV, ENCFF879YMO 990401080 ENCODE Processing Pipeline 812935662cce667eb4de89e122174de6 https://www.encodeproject.org/files/ENCFF004ACP/@@download/ENCFF004ACP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF195WFT bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF361MVV, ENCFF879YMO 1058256353 ENCODE Processing Pipeline 5878bb702a5fc92472c1409777d0e409 https://www.encodeproject.org/files/ENCFF195WFT/@@download/ENCFF195WFT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF381QTG bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF561BWI 11337287 ENCODE Processing Pipeline 7c604d3c78341841a31dda4d854aedfc https://www.encodeproject.org/files/ENCFF381QTG/@@download/ENCFF381QTG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF963ZTP bigBed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF987PGY 495341 ENCODE Processing Pipeline f181f8fbce4f5e445d88ff4286a3e801 https://www.encodeproject.org/files/ENCFF963ZTP/@@download/ENCFF963ZTP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF691UIA bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF829UQN 13389756 ENCODE Processing Pipeline 717a2ff0e61cc131b399a55b45c6b766 https://www.encodeproject.org/files/ENCFF691UIA/@@download/ENCFF691UIA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF046AYP bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382WPK 13320267 ENCODE Processing Pipeline ee2b3f8e05d0d3ac755e25fd95f6c766 https://www.encodeproject.org/files/ENCFF046AYP/@@download/ENCFF046AYP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF427XBU bed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382WPK, ENCFF419RSJ, ENCFF561BWI, ENCFF829UQN 135590 ENCODE Processing Pipeline 737ac08fa75130e857793e32f6831a74 https://www.encodeproject.org/files/ENCFF427XBU/@@download/ENCFF427XBU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF366HBX bigBed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF427XBU 343904 ENCODE Processing Pipeline 206c6a585bd2a795c2fb47ab4d2aa8de https://www.encodeproject.org/files/ENCFF366HBX/@@download/ENCFF366HBX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF669LLL bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF089SHL, ENCFF574BGV 1112358459 ENCODE Processing Pipeline 7d76d99898cc0508faff879766857246 https://www.encodeproject.org/files/ENCFF669LLL/@@download/ENCFF669LLL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF829UQN bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF089SHL, ENCFF574BGV 6472203 ENCODE Processing Pipeline 383113a9a32e2d233176b9cc7fa52093 https://www.encodeproject.org/files/ENCFF829UQN/@@download/ENCFF829UQN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF382WPK bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089SHL, ENCFF361MVV, ENCFF574BGV, ENCFF879YMO 7134716 ENCODE Processing Pipeline 2a1de286f280907264e4ef15ca6ee196 https://www.encodeproject.org/files/ENCFF382WPK/@@download/ENCFF382WPK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF755SWK bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 972787040 ENCODE Processing Pipeline 7bf7cbfa8c6f2aa6ff03fea015229717 https://www.encodeproject.org/files/ENCFF755SWK/@@download/ENCFF755SWK.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF458EXI bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF204LRJ, ENCFF287SKW, ENCFF758USJ, ENCFF941TZZ 1866566430 ENCODE Processing Pipeline 3596d7f2a667054d152f588e0fa0e56b https://www.encodeproject.org/files/ENCFF458EXI/@@download/ENCFF458EXI.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF801AFD bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF057LDF 13296810 ENCODE Processing Pipeline f9305349d5f0a0d8c9813b8e2690325a https://www.encodeproject.org/files/ENCFF801AFD/@@download/ENCFF801AFD.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF082DHF bed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF057LDF, ENCFF562WIC, ENCFF916SIZ 131178 ENCODE Processing Pipeline de353e6e315617759d3377c57217670d https://www.encodeproject.org/files/ENCFF082DHF/@@download/ENCFF082DHF.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF632MBO bed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF057LDF, ENCFF562WIC, ENCFF916SIZ 208040 ENCODE Processing Pipeline 77c0993b8896711fa45c03a67e592c7b https://www.encodeproject.org/files/ENCFF632MBO/@@download/ENCFF632MBO.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF562WIC bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 6487120 ENCODE Processing Pipeline 8dbfd846077b291aad653f4a95112cea https://www.encodeproject.org/files/ENCFF562WIC/@@download/ENCFF562WIC.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF968QNK bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF916SIZ 11322378 ENCODE Processing Pipeline f864ed17d68c2a6c7648795f59908bd9 https://www.encodeproject.org/files/ENCFF968QNK/@@download/ENCFF968QNK.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF238YRN bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 1133820753 ENCODE Processing Pipeline 0c5f35f36db13dbdbf4989bcff4510ba https://www.encodeproject.org/files/ENCFF238YRN/@@download/ENCFF238YRN.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF202VQL bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF204LRJ, ENCFF287SKW, ENCFF758USJ, ENCFF941TZZ 2082790897 ENCODE Processing Pipeline 3eef81456cf0a1f58b5d034d4f4eb87e https://www.encodeproject.org/files/ENCFF202VQL/@@download/ENCFF202VQL.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF671VEC bigWig fold change over control ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 1064925402 ENCODE Processing Pipeline 47d47f52ef37681a9cb6c8fc18f15ba1 https://www.encodeproject.org/files/ENCFF671VEC/@@download/ENCFF671VEC.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF644PRE bigBed narrowPeak conservative idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF082DHF 338880 ENCODE Processing Pipeline e47654f97eb26f13ba6d36707d04b654 https://www.encodeproject.org/files/ENCFF644PRE/@@download/ENCFF644PRE.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF410WHB bigWig signal p-value ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 977387517 ENCODE Processing Pipeline 82cf2436596760ced7874f3158267393 https://www.encodeproject.org/files/ENCFF410WHB/@@download/ENCFF410WHB.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF916SIZ bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 5872937 ENCODE Processing Pipeline 014543a6096a1419451ccae73d845cfd https://www.encodeproject.org/files/ENCFF916SIZ/@@download/ENCFF916SIZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF057LDF bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF204LRJ, ENCFF287SKW, ENCFF758USJ, ENCFF941TZZ 7119300 ENCODE Processing Pipeline 656c8a57825846b0fdce3cd4c9493088 https://www.encodeproject.org/files/ENCFF057LDF/@@download/ENCFF057LDF.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF555PJG bigBed narrowPeak optimal idr thresholded peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF632MBO 477308 ENCODE Processing Pipeline 8a622c3f9fe44de7ce19e091ddf4293c https://www.encodeproject.org/files/ENCFF555PJG/@@download/ENCFF555PJG.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF301VAM bigBed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF562WIC 13390861 ENCODE Processing Pipeline 83ec0359111edbba4a319e538798a477 https://www.encodeproject.org/files/ENCFF301VAM/@@download/ENCFF301VAM.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF944NSS bam unfiltered alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 100 ENCFF700CIV, ENCFF807MUK, ENCFF872XVD 3694222629 ENCODE Processing Pipeline d18a260e94f041fb7e699506373d1b85 https://www.encodeproject.org/files/ENCFF944NSS/@@download/ENCFF944NSS.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF131ZCY bam unfiltered alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 100 ENCFF373VRZ, ENCFF539YNG, ENCFF807MUK 4800295580 ENCODE Processing Pipeline fe9ca20a305b798c3eddaf4fa6306460 https://www.encodeproject.org/files/ENCFF131ZCY/@@download/ENCFF131ZCY.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF872XVD fastq reads ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF700CIV 1698674404 Michael Snyder, Stanford b921c474256a64458c26538378e75ce1 https://www.encodeproject.org/files/ENCFF872XVD/@@download/ENCFF872XVD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF373VRZ fastq reads ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF539YNG 2157287224 Michael Snyder, Stanford 62909d16069d4939df16bf25d8c1d10f https://www.encodeproject.org/files/ENCFF373VRZ/@@download/ENCFF373VRZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF700CIV fastq reads ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF872XVD 1664027145 Michael Snyder, Stanford 43693f19c6fb5507ffa367f30ba2c503 https://www.encodeproject.org/files/ENCFF700CIV/@@download/ENCFF700CIV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF539YNG fastq reads ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF373VRZ 2197906493 Michael Snyder, Stanford 0532a6f938308915a48c5b58fdb8f8fa https://www.encodeproject.org/files/ENCFF539YNG/@@download/ENCFF539YNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF717XED bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 100 ENCFF700CIV, ENCFF807MUK, ENCFF872XVD 3065959793 ENCODE Processing Pipeline c1cb3184267ecca58f0fef7027aed2e8 https://www.encodeproject.org/files/ENCFF717XED/@@download/ENCFF717XED.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF643WDX bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 100 ENCFF373VRZ, ENCFF539YNG, ENCFF807MUK 4180295807 ENCODE Processing Pipeline ec27df3ac2919b7cfacc40b384376bc1 https://www.encodeproject.org/files/ENCFF643WDX/@@download/ENCFF643WDX.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF564FZT bigWig signal p-value ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF717XED 891022789 ENCODE Processing Pipeline 1367f8889a957424b6d26866f81752d9 https://www.encodeproject.org/files/ENCFF564FZT/@@download/ENCFF564FZT.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF228PUI bigBed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF827TVA 13173924 ENCODE Processing Pipeline 8f9f8ea9550d704c28354efd831c96ce https://www.encodeproject.org/files/ENCFF228PUI/@@download/ENCFF228PUI.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF836LAD bigBed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF155ELE 12951372 ENCODE Processing Pipeline 122848624105422b9d05085aa703af0e https://www.encodeproject.org/files/ENCFF836LAD/@@download/ENCFF836LAD.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF036WGZ bigWig fold change over control ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF643WDX, ENCFF717XED 1990599793 ENCODE Processing Pipeline 109b39cd5d297ad5cbe13e00a7abd7ca https://www.encodeproject.org/files/ENCFF036WGZ/@@download/ENCFF036WGZ.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF840HCT bigBed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF794YNX 13178917 ENCODE Processing Pipeline 254cfde60a5566c2abb16e9f54942511 https://www.encodeproject.org/files/ENCFF840HCT/@@download/ENCFF840HCT.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF787SKU bigWig signal p-value ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF643WDX, ENCFF717XED 1883839471 ENCODE Processing Pipeline 30d6fe4e3679987847f25a1aa11c14c9 https://www.encodeproject.org/files/ENCFF787SKU/@@download/ENCFF787SKU.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF554MUB bigWig fold change over control ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF643WDX 1109030909 ENCODE Processing Pipeline 1942cd43c209a3a6a3d8d0c01d9011ad https://www.encodeproject.org/files/ENCFF554MUB/@@download/ENCFF554MUB.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF155ELE bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF643WDX, ENCFF717XED 7244647 ENCODE Processing Pipeline e15a0f9b9da61d5fbde8b591dba53203 https://www.encodeproject.org/files/ENCFF155ELE/@@download/ENCFF155ELE.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF399WFE bigWig signal p-value ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF643WDX 946584089 ENCODE Processing Pipeline dc87d3fccbd0bec84831a67161d2fdc0 https://www.encodeproject.org/files/ENCFF399WFE/@@download/ENCFF399WFE.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF212VNB bigWig fold change over control ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF717XED 971376862 ENCODE Processing Pipeline 14ae655b16a1c2db26d56ad33a0f53f4 https://www.encodeproject.org/files/ENCFF212VNB/@@download/ENCFF212VNB.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF794YNX bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF717XED 6741435 ENCODE Processing Pipeline e0a0cb8650826c0fd9877d30d8a8bb4c https://www.encodeproject.org/files/ENCFF794YNX/@@download/ENCFF794YNX.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF827TVA bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF643WDX 6823194 ENCODE Processing Pipeline f99e6433e27c7d123a4ea6d6aa1212e1 https://www.encodeproject.org/files/ENCFF827TVA/@@download/ENCFF827TVA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF558AOF bam unfiltered alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF700CIV, ENCFF872XVD 3697643431 ENCODE Processing Pipeline 2a702e4d3dd666bfe72b1c5310802656 https://www.encodeproject.org/files/ENCFF558AOF/@@download/ENCFF558AOF.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF110WHO bam unfiltered alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 100 ENCFF373VRZ, ENCFF539YNG, ENCFF643CGH 4805431360 ENCODE Processing Pipeline 722c6d0acf68d673165c905f5899201d https://www.encodeproject.org/files/ENCFF110WHO/@@download/ENCFF110WHO.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF410BXB bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF700CIV, ENCFF872XVD 3067689560 ENCODE Processing Pipeline 71a655fc78b13476690061e971937f5d https://www.encodeproject.org/files/ENCFF410BXB/@@download/ENCFF410BXB.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF287QPE bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 100 ENCFF373VRZ, ENCFF539YNG, ENCFF643CGH 4182774140 ENCODE Processing Pipeline 024239acb2dabd9010c520596ee7fd6c https://www.encodeproject.org/files/ENCFF287QPE/@@download/ENCFF287QPE.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF103BTF bigWig signal p-value ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF410BXB, ENCFF910IKB 1075300066 ENCODE Processing Pipeline 6560db90f34a09fc53a1be45b53b585c https://www.encodeproject.org/files/ENCFF103BTF/@@download/ENCFF103BTF.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF785BTG bigWig signal p-value ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF287QPE 1167470627 ENCODE Processing Pipeline 2432c1d3fdf644cb03939decb0c6dc0e https://www.encodeproject.org/files/ENCFF785BTG/@@download/ENCFF785BTG.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF106PKZ bigWig signal p-value ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF287QPE, ENCFF410BXB, ENCFF910IKB 1667653490 ENCODE Processing Pipeline f323bdb01d17039dde2a013828323043 https://www.encodeproject.org/files/ENCFF106PKZ/@@download/ENCFF106PKZ.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF799LCC bigWig fold change over control ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF410BXB, ENCFF910IKB 972698866 ENCODE Processing Pipeline 3b0992958ec31adc595bdeac08446e9c https://www.encodeproject.org/files/ENCFF799LCC/@@download/ENCFF799LCC.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF979VFT bigWig fold change over control ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF287QPE 1125096164 ENCODE Processing Pipeline cbef349afc47210616d203829b35215e https://www.encodeproject.org/files/ENCFF979VFT/@@download/ENCFF979VFT.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF802JFC bigWig fold change over control ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF287QPE, ENCFF410BXB, ENCFF910IKB 1980484589 ENCODE Processing Pipeline d266267746e8db19ea0c2d50758b77b5 https://www.encodeproject.org/files/ENCFF802JFC/@@download/ENCFF802JFC.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF687UOI bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF410BXB, ENCFF910IKB 6611781 ENCODE Processing Pipeline af5316a233736a85e16190b20be88b07 https://www.encodeproject.org/files/ENCFF687UOI/@@download/ENCFF687UOI.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF008UNG bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF287QPE 6728602 ENCODE Processing Pipeline c77c5623bcb4aba40bbbfc37a71dd08e https://www.encodeproject.org/files/ENCFF008UNG/@@download/ENCFF008UNG.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF461WWC bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF287QPE, ENCFF410BXB, ENCFF910IKB 7223320 ENCODE Processing Pipeline cb5870b2623d26785126412e7f25bae4 https://www.encodeproject.org/files/ENCFF461WWC/@@download/ENCFF461WWC.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF453NTS bigBed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF687UOI 13170805 ENCODE Processing Pipeline 3c81c9cc8a6d5b72d7103022e4a55f03 https://www.encodeproject.org/files/ENCFF453NTS/@@download/ENCFF453NTS.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF736YBR bigBed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF008UNG 13175673 ENCODE Processing Pipeline e80d4404a988c2d999ac415e22f4d8af https://www.encodeproject.org/files/ENCFF736YBR/@@download/ENCFF736YBR.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF397MIX bigBed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF461WWC 12949458 ENCODE Processing Pipeline bf59ad32ee39336721bff8b385952957 https://www.encodeproject.org/files/ENCFF397MIX/@@download/ENCFF397MIX.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF313PGK bed narrowPeak conservative idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF008UNG, ENCFF419RSJ, ENCFF461WWC, ENCFF687UOI 237920 ENCODE Processing Pipeline d0787ff250a76f9dc5cc0ae209069bfa https://www.encodeproject.org/files/ENCFF313PGK/@@download/ENCFF313PGK.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF551OSB bigBed narrowPeak conservative idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF313PGK 596197 ENCODE Processing Pipeline 17a9a870864db3bf5aeb756403aeff50 https://www.encodeproject.org/files/ENCFF551OSB/@@download/ENCFF551OSB.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF411RMT bed narrowPeak optimal idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF008UNG, ENCFF419RSJ, ENCFF461WWC, ENCFF687UOI 329819 ENCODE Processing Pipeline c14385af75e35a2fd5161c33948d6f59 https://www.encodeproject.org/files/ENCFF411RMT/@@download/ENCFF411RMT.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF546AAY bigBed narrowPeak optimal idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF411RMT 774582 ENCODE Processing Pipeline 010b2ea43588d80d51db4abb207b6933 https://www.encodeproject.org/files/ENCFF546AAY/@@download/ENCFF546AAY.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF666LZV bed narrowPeak optimal idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF155ELE, ENCFF794YNX, ENCFF827TVA 288183 ENCODE Processing Pipeline 26b2fd0f0f7be3a533a5d97eef32e3d3 https://www.encodeproject.org/files/ENCFF666LZV/@@download/ENCFF666LZV.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF619FWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF148RRJ 362888 ENCODE Processing Pipeline 0d2b851d8732be9282a1ec8640833f27 https://www.encodeproject.org/files/ENCFF619FWQ/@@download/ENCFF619FWQ.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF449EMH bigBed narrowPeak optimal idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF666LZV 593916 ENCODE Processing Pipeline 1ed676742f024f84b8a4e8b4ead263a8 https://www.encodeproject.org/files/ENCFF449EMH/@@download/ENCFF449EMH.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF148RRJ bed narrowPeak conservative idr thresholded peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF155ELE, ENCFF794YNX, ENCFF827TVA 191476 ENCODE Processing Pipeline f3cd0079b53fea9ab706394a45a8b899 https://www.encodeproject.org/files/ENCFF148RRJ/@@download/ENCFF148RRJ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF553DAZ bam unfiltered alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF515YST, ENCFF807MUK 1657703113 ENCODE Processing Pipeline 73ae0030e5f6d67346e7ac2694d1d10c https://www.encodeproject.org/files/ENCFF553DAZ/@@download/ENCFF553DAZ.bam hg19 released low read depth, antibody characterized with exemption ENCFF676CXB bam unfiltered alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF644JIO, ENCFF807MUK 1298346687 ENCODE Processing Pipeline 68a93e870f4994f6e983e2cebd362214 https://www.encodeproject.org/files/ENCFF676CXB/@@download/ENCFF676CXB.bam hg19 released low read depth, antibody characterized with exemption ENCFF768XDX bigBed narrowPeak conservative idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF259VDF 169384 ENCODE Processing Pipeline 38272474c2a608403646128958f3b069 https://www.encodeproject.org/files/ENCFF768XDX/@@download/ENCFF768XDX.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF689EEG bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF391CGQ, ENCFF892CVA 6921393 ENCODE Processing Pipeline 852de3d3ed7602a4512d2f72f290398e https://www.encodeproject.org/files/ENCFF689EEG/@@download/ENCFF689EEG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF982USG bigBed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF011EFB 10966563 ENCODE Processing Pipeline d625a4c198df6696f584540afb3f92e1 https://www.encodeproject.org/files/ENCFF982USG/@@download/ENCFF982USG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF147WNH bigBed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF689EEG 13197172 ENCODE Processing Pipeline 00b033b575a7e9a18d077f84ac8c929c https://www.encodeproject.org/files/ENCFF147WNH/@@download/ENCFF147WNH.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF341RWZ bigBed narrowPeak optimal idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF422BXE 187715 ENCODE Processing Pipeline 39181a57a9caa8bb0c069e418196b5e5 https://www.encodeproject.org/files/ENCFF341RWZ/@@download/ENCFF341RWZ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF903KVY bigWig signal p-value ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF391CGQ, ENCFF892CVA 1020531417 ENCODE Processing Pipeline ca18a0eaedcb9e9153c9659731e09148 https://www.encodeproject.org/files/ENCFF903KVY/@@download/ENCFF903KVY.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF962DJQ bigWig fold change over control ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF391CGQ, ENCFF892CVA 955128826 ENCODE Processing Pipeline 89641e9c47d9e4a4e043d97b95af4a74 https://www.encodeproject.org/files/ENCFF962DJQ/@@download/ENCFF962DJQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF259VDF bed narrowPeak conservative idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF011EFB, ENCFF206UIN, ENCFF689EEG 56631 ENCODE Processing Pipeline 2b0ee616f58502d727bc038518aa7e0c https://www.encodeproject.org/files/ENCFF259VDF/@@download/ENCFF259VDF.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF011EFB bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF023YMB, ENCFF391CGQ 5422867 ENCODE Processing Pipeline 3bcd5f121b6f622b8ea4fb2fa089e04d https://www.encodeproject.org/files/ENCFF011EFB/@@download/ENCFF011EFB.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF206UIN bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF092ACZ, ENCFF892CVA 5905358 ENCODE Processing Pipeline 2b36d9bac13bba57a31bcc0042bc5d80 https://www.encodeproject.org/files/ENCFF206UIN/@@download/ENCFF206UIN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF535RVH bigBed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF206UIN 13207264 ENCODE Processing Pipeline 847e3556428f996ec5e913c70820a8c0 https://www.encodeproject.org/files/ENCFF535RVH/@@download/ENCFF535RVH.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF422BXE bed narrowPeak optimal idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF011EFB, ENCFF206UIN, ENCFF689EEG 67757 ENCODE Processing Pipeline e97fc8a7872ed1a2adc9f51836bb71e1 https://www.encodeproject.org/files/ENCFF422BXE/@@download/ENCFF422BXE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF515YST fastq reads ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 1 50 single-ended 1539561612 Richard Myers, HAIB 33670742be9480e9ce99e8da7efce1c2 SRA:SRR5338965 https://www.encodeproject.org/files/ENCFF515YST/@@download/ENCFF515YST.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGB/ released low read depth, antibody characterized with exemption ENCFF644JIO fastq reads ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 1 50 single-ended 1186636132 Richard Myers, HAIB 71999396ce8452e8ed4d17f3db768d1d SRA:SRR5338964 https://www.encodeproject.org/files/ENCFF644JIO/@@download/ENCFF644JIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released low read depth, antibody characterized with exemption ENCFF391CGQ bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF644JIO, ENCFF807MUK 975414658 ENCODE Processing Pipeline ed8f8fc0178028b2ef565a769a1f6f25 https://www.encodeproject.org/files/ENCFF391CGQ/@@download/ENCFF391CGQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF892CVA bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF515YST, ENCFF807MUK 1202776767 ENCODE Processing Pipeline eedbe083eb9d66ae986e0c249c31b829 https://www.encodeproject.org/files/ENCFF892CVA/@@download/ENCFF892CVA.bam hg19 released low read depth, antibody characterized with exemption ENCFF217LOT bigWig fold change over control ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF023YMB, ENCFF391CGQ 411464311 ENCODE Processing Pipeline 04914c008f47bedd52dfade2e9b47fe5 https://www.encodeproject.org/files/ENCFF217LOT/@@download/ENCFF217LOT.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF908OKZ bigWig signal p-value ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF023YMB, ENCFF391CGQ 609117254 ENCODE Processing Pipeline 3e144f733eff1f54c48d981c7781d31b https://www.encodeproject.org/files/ENCFF908OKZ/@@download/ENCFF908OKZ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF281EQZ bigWig signal p-value ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF092ACZ, ENCFF892CVA 676342354 ENCODE Processing Pipeline b46c4ab074bd1e5d099f57cbcc9e225f https://www.encodeproject.org/files/ENCFF281EQZ/@@download/ENCFF281EQZ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF736QLP bigWig fold change over control ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF092ACZ, ENCFF892CVA 488867918 ENCODE Processing Pipeline 1de5e738021e6a011a2742884829af12 https://www.encodeproject.org/files/ENCFF736QLP/@@download/ENCFF736QLP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF497WWQ bam unfiltered alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF643CGH, ENCFF644JIO 1300934913 ENCODE Processing Pipeline b309361282da0a7f852f2da892b3ded9 https://www.encodeproject.org/files/ENCFF497WWQ/@@download/ENCFF497WWQ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF280MYH bam unfiltered alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF515YST, ENCFF643CGH 1662701792 ENCODE Processing Pipeline e4ffb8ecbccbb5b4f644c06802533e6a https://www.encodeproject.org/files/ENCFF280MYH/@@download/ENCFF280MYH.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF011XRF bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF643CGH, ENCFF644JIO 975007019 ENCODE Processing Pipeline 15d5e4c080f760145489bb7b69c3a5db https://www.encodeproject.org/files/ENCFF011XRF/@@download/ENCFF011XRF.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF812KIP bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF515YST, ENCFF643CGH 1202267595 ENCODE Processing Pipeline 14f84bc03e5a78a95522f7770431b0aa https://www.encodeproject.org/files/ENCFF812KIP/@@download/ENCFF812KIP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF472QBL bigWig signal p-value ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF011XRF, ENCFF709XAA 553089199 ENCODE Processing Pipeline 20432fa59f6b5d8a62f4c43d524b60ec https://www.encodeproject.org/files/ENCFF472QBL/@@download/ENCFF472QBL.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF796KDJ bigWig signal p-value ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF285EWB, ENCFF812KIP 561963349 ENCODE Processing Pipeline 6b6d2def18c139dde1a51eb3450cb268 https://www.encodeproject.org/files/ENCFF796KDJ/@@download/ENCFF796KDJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF198AJC bigWig signal p-value ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF011XRF, ENCFF285EWB, ENCFF709XAA, ENCFF812KIP 1034774088 ENCODE Processing Pipeline e5a708fcdfed961fa742cd8983294244 https://www.encodeproject.org/files/ENCFF198AJC/@@download/ENCFF198AJC.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF410VFY bigWig fold change over control ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF011XRF, ENCFF709XAA 410942731 ENCODE Processing Pipeline 2889c2aca4f5e3037e5e36d78f9c3f3c https://www.encodeproject.org/files/ENCFF410VFY/@@download/ENCFF410VFY.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF604SPG bigWig fold change over control ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF285EWB, ENCFF812KIP 492106588 ENCODE Processing Pipeline 75c32d6d44e558fed10c5e2e20cc69a6 https://www.encodeproject.org/files/ENCFF604SPG/@@download/ENCFF604SPG.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF185TTH bigWig fold change over control ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF011XRF, ENCFF285EWB, ENCFF709XAA, ENCFF812KIP 996114127 ENCODE Processing Pipeline 355adcc96b51329a77621556eb2ef84f https://www.encodeproject.org/files/ENCFF185TTH/@@download/ENCFF185TTH.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF157SQN bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF285EWB, ENCFF812KIP 5841730 ENCODE Processing Pipeline effa89adbba74efcd57568b3796df7c9 https://www.encodeproject.org/files/ENCFF157SQN/@@download/ENCFF157SQN.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF246VDU bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF011XRF, ENCFF709XAA 5331491 ENCODE Processing Pipeline 547153566bb601110b982ec6211d9a1b https://www.encodeproject.org/files/ENCFF246VDU/@@download/ENCFF246VDU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF560AQD bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF011XRF, ENCFF285EWB, ENCFF709XAA, ENCFF812KIP 6903840 ENCODE Processing Pipeline e6f01f1ac4b374a039812285aca29452 https://www.encodeproject.org/files/ENCFF560AQD/@@download/ENCFF560AQD.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF324JON bigBed narrowPeak conservative idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF049YPY 143881 ENCODE Processing Pipeline 6982cbcd950ac3771ce574d96800acbd https://www.encodeproject.org/files/ENCFF324JON/@@download/ENCFF324JON.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF867UFX bigBed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF157SQN 13209974 ENCODE Processing Pipeline 4e1c99a4dce6fffdbbb4bfdae064230b https://www.encodeproject.org/files/ENCFF867UFX/@@download/ENCFF867UFX.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF437PVP bigBed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF560AQD 13205323 ENCODE Processing Pipeline 811ace92fb24a273b1b6e58b11b0c908 https://www.encodeproject.org/files/ENCFF437PVP/@@download/ENCFF437PVP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF388VTY bigBed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF246VDU 11007204 ENCODE Processing Pipeline 1b606e4e0f2283d4fba5af9b5a0631b1 https://www.encodeproject.org/files/ENCFF388VTY/@@download/ENCFF388VTY.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF049YPY bed narrowPeak conservative idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF157SQN, ENCFF246VDU, ENCFF419RSJ, ENCFF560AQD 56619 ENCODE Processing Pipeline 29a3ffe5a110a514e48acc2db47dcc5e https://www.encodeproject.org/files/ENCFF049YPY/@@download/ENCFF049YPY.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF091MQJ bed narrowPeak optimal idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF157SQN, ENCFF246VDU, ENCFF419RSJ, ENCFF560AQD 66220 ENCODE Processing Pipeline 5c2f1d696ec866604a2f43624f6b8839 https://www.encodeproject.org/files/ENCFF091MQJ/@@download/ENCFF091MQJ.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF222JOO bigBed narrowPeak optimal idr thresholded peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF091MQJ 157175 ENCODE Processing Pipeline 69b6b2490672e867a285ffe7227f186b https://www.encodeproject.org/files/ENCFF222JOO/@@download/ENCFF222JOO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF843ZPR fastq reads ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 1 40 single-ended 829117829 Xiang-Dong Fu, UCSD 6eb31493bf4204835519de24591e4fc8 https://www.encodeproject.org/files/ENCFF843ZPR/@@download/ENCFF843ZPR.fastq.gz Illumina HiSeq 2500 /files/ENCFF025UQF/ released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF518CED fastq reads ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 1 40 single-ended 790885862 Xiang-Dong Fu, UCSD d4d8e6ad127ee6a1c2ec4c7fb2366371 https://www.encodeproject.org/files/ENCFF518CED/@@download/ENCFF518CED.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF283FKG bam unfiltered alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF518CED, ENCFF807MUK 1090073596 ENCODE Processing Pipeline 415af3c99415a728625cb9d8bc6376c0 https://www.encodeproject.org/files/ENCFF283FKG/@@download/ENCFF283FKG.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF338GMK bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF518CED, ENCFF807MUK 684872555 ENCODE Processing Pipeline a2d263ddf4d290c719cfae6c0528d54e https://www.encodeproject.org/files/ENCFF338GMK/@@download/ENCFF338GMK.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF927SAQ bam unfiltered alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF518CED, ENCFF643CGH 1094058662 ENCODE Processing Pipeline d7d319f0fc13edde552334ffa2a1f898 https://www.encodeproject.org/files/ENCFF927SAQ/@@download/ENCFF927SAQ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF218QBY bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF518CED, ENCFF643CGH 684050751 ENCODE Processing Pipeline 86e8747d8916331e5c1eea9f10205e71 https://www.encodeproject.org/files/ENCFF218QBY/@@download/ENCFF218QBY.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF438LZN bam unfiltered alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF807MUK, ENCFF843ZPR 1147555625 ENCODE Processing Pipeline 36de8900143cb381a3d418e94431c805 https://www.encodeproject.org/files/ENCFF438LZN/@@download/ENCFF438LZN.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF189KSL bam unfiltered alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF643CGH, ENCFF843ZPR 1151681617 ENCODE Processing Pipeline 53523013088566fe8fdaa3a794d02cc7 https://www.encodeproject.org/files/ENCFF189KSL/@@download/ENCFF189KSL.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF656RDN bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF807MUK, ENCFF843ZPR 731590680 ENCODE Processing Pipeline d20a0c1a54d4abb2a629e811aab855db https://www.encodeproject.org/files/ENCFF656RDN/@@download/ENCFF656RDN.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF063CFN bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF643CGH, ENCFF843ZPR 730739430 ENCODE Processing Pipeline 21ab969450635a502f0ab09148392089 https://www.encodeproject.org/files/ENCFF063CFN/@@download/ENCFF063CFN.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF512BEK bigWig signal p-value ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF338GMK, ENCFF477SGV, ENCFF656RDN, ENCFF705ZEH 979145745 ENCODE Processing Pipeline cb68eb193290c90f8fd4e323fa03cf31 https://www.encodeproject.org/files/ENCFF512BEK/@@download/ENCFF512BEK.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF931FDJ bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF338GMK, ENCFF705ZEH 5325342 ENCODE Processing Pipeline c253cf61597b4f3bee4329ea3578c28a https://www.encodeproject.org/files/ENCFF931FDJ/@@download/ENCFF931FDJ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF302IWU bigBed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF931FDJ 12955433 ENCODE Processing Pipeline e1fe212a9cb3a7b7300a2691e31639c5 https://www.encodeproject.org/files/ENCFF302IWU/@@download/ENCFF302IWU.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF693ERI bed narrowPeak conservative idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF001TDO, ENCFF385SRC, ENCFF516RWD, ENCFF931FDJ 49590 ENCODE Processing Pipeline c65cb8cf769dd28a766ca280dd7f8e36 https://www.encodeproject.org/files/ENCFF693ERI/@@download/ENCFF693ERI.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF939MXF bigWig signal p-value ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF477SGV, ENCFF656RDN 451238653 ENCODE Processing Pipeline eff77919ba8388b071f846f024f4d1f3 https://www.encodeproject.org/files/ENCFF939MXF/@@download/ENCFF939MXF.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF824WDZ bigWig fold change over control ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF338GMK, ENCFF705ZEH 389647522 ENCODE Processing Pipeline 40a28b4eb3a7fe36983151e0c3269ac5 https://www.encodeproject.org/files/ENCFF824WDZ/@@download/ENCFF824WDZ.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF385SRC bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF477SGV, ENCFF656RDN 5644009 ENCODE Processing Pipeline 48301dfbdebe15de7ac1d5f611e071f6 https://www.encodeproject.org/files/ENCFF385SRC/@@download/ENCFF385SRC.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF516RWD bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF338GMK, ENCFF477SGV, ENCFF656RDN, ENCFF705ZEH 6821203 ENCODE Processing Pipeline d6112ace681c04450ab3e2090c6ea99e https://www.encodeproject.org/files/ENCFF516RWD/@@download/ENCFF516RWD.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF481OIK bigWig fold change over control ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF477SGV, ENCFF656RDN 382182356 ENCODE Processing Pipeline 34752b201c886f748b7eaca345274f66 https://www.encodeproject.org/files/ENCFF481OIK/@@download/ENCFF481OIK.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF046WHP bigWig fold change over control ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF338GMK, ENCFF477SGV, ENCFF656RDN, ENCFF705ZEH 823583642 ENCODE Processing Pipeline 71e8bf2604eef74fbf8592262d59062f https://www.encodeproject.org/files/ENCFF046WHP/@@download/ENCFF046WHP.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF205BFQ bigBed narrowPeak conservative idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF693ERI 168310 ENCODE Processing Pipeline 3a7775dfecbdaa3310a83026cef2a26c https://www.encodeproject.org/files/ENCFF205BFQ/@@download/ENCFF205BFQ.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF017KVR bigBed narrowPeak optimal idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF209JJD 174546 ENCODE Processing Pipeline 6f541d4bf8da1215389e6da77dba5c61 https://www.encodeproject.org/files/ENCFF017KVR/@@download/ENCFF017KVR.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF935JKE bigWig signal p-value ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF338GMK, ENCFF705ZEH 447200866 ENCODE Processing Pipeline 62a5196cf42bf9144d31968498ab45fa https://www.encodeproject.org/files/ENCFF935JKE/@@download/ENCFF935JKE.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF124SCH bigBed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF516RWD 13015332 ENCODE Processing Pipeline ec59941a304813ff58000a7a9edcad00 https://www.encodeproject.org/files/ENCFF124SCH/@@download/ENCFF124SCH.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF209JJD bed narrowPeak optimal idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF001TDO, ENCFF385SRC, ENCFF516RWD, ENCFF931FDJ 52334 ENCODE Processing Pipeline f2717e7e28bb23539039c99e1f4e2795 https://www.encodeproject.org/files/ENCFF209JJD/@@download/ENCFF209JJD.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF540MRJ bigBed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF385SRC 12996674 ENCODE Processing Pipeline 0cca04e9c61d4bf7211c04dd97f28bfb https://www.encodeproject.org/files/ENCFF540MRJ/@@download/ENCFF540MRJ.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF914PAM bigBed narrowPeak optimal idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF503DIK 186951 ENCODE Processing Pipeline a68e7f679ed3c7406a7e8fd0697ac378 https://www.encodeproject.org/files/ENCFF914PAM/@@download/ENCFF914PAM.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF806RMK bigWig signal p-value ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF063CFN, ENCFF218QBY 752266568 ENCODE Processing Pipeline e8aac3bc5e7145a07a444b8e84252f79 https://www.encodeproject.org/files/ENCFF806RMK/@@download/ENCFF806RMK.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF923WED bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF063CFN 5635716 ENCODE Processing Pipeline d08a94c262817cbc7ab0ec4091a00d5e https://www.encodeproject.org/files/ENCFF923WED/@@download/ENCFF923WED.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF162WNP bigBed narrowPeak conservative idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF055YKX 167511 ENCODE Processing Pipeline 07c385cbf72e05c9c0613429322ca8eb https://www.encodeproject.org/files/ENCFF162WNP/@@download/ENCFF162WNP.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF370IZC bigWig signal p-value ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF063CFN 538177093 ENCODE Processing Pipeline 52435be67ef2dbce92bfe23280fe26d9 https://www.encodeproject.org/files/ENCFF370IZC/@@download/ENCFF370IZC.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF934FBC bigWig signal p-value ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF218QBY 530167903 ENCODE Processing Pipeline 6c4f1526107ffc960e9921df93af1ba6 https://www.encodeproject.org/files/ENCFF934FBC/@@download/ENCFF934FBC.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF102ZEV bigWig fold change over control ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF063CFN, ENCFF218QBY 826769537 ENCODE Processing Pipeline b50e16897f723a7ee7471df9b6f7748a https://www.encodeproject.org/files/ENCFF102ZEV/@@download/ENCFF102ZEV.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF638AEI bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF218QBY 5305283 ENCODE Processing Pipeline be15f83c7bc906b1933b29a3d39ea0b9 https://www.encodeproject.org/files/ENCFF638AEI/@@download/ENCFF638AEI.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF879ZIG bigBed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF638AEI 12970811 ENCODE Processing Pipeline 56d5e0e2385553249031af0817e77988 https://www.encodeproject.org/files/ENCFF879ZIG/@@download/ENCFF879ZIG.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF828PSO bigBed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF471VAC 13030574 ENCODE Processing Pipeline 284292c81e78be6f237b85936232b0d3 https://www.encodeproject.org/files/ENCFF828PSO/@@download/ENCFF828PSO.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF503DIK bed narrowPeak optimal idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF419RSJ, ENCFF471VAC, ENCFF638AEI, ENCFF923WED 58149 ENCODE Processing Pipeline b2a60c137734255b7be0d029f2330a7d https://www.encodeproject.org/files/ENCFF503DIK/@@download/ENCFF503DIK.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF494YKZ bigWig fold change over control ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF063CFN 397266377 ENCODE Processing Pipeline 12758ef9532963a2b204ccaed55558a8 https://www.encodeproject.org/files/ENCFF494YKZ/@@download/ENCFF494YKZ.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF055YKX bed narrowPeak conservative idr thresholded peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF419RSJ, ENCFF471VAC, ENCFF638AEI, ENCFF923WED 47992 ENCODE Processing Pipeline e5c4d13e4b0609dcb707f63ee76c6c53 https://www.encodeproject.org/files/ENCFF055YKX/@@download/ENCFF055YKX.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF450QYX bigWig fold change over control ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF218QBY 378411811 ENCODE Processing Pipeline 30bb057ce51ff924c7c41d36aaad421c https://www.encodeproject.org/files/ENCFF450QYX/@@download/ENCFF450QYX.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF471VAC bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF063CFN, ENCFF218QBY 6829700 ENCODE Processing Pipeline 6cdbfa814736ce2b1a57602102519b70 https://www.encodeproject.org/files/ENCFF471VAC/@@download/ENCFF471VAC.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF907REL bigBed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF923WED 12999768 ENCODE Processing Pipeline 8a568be72c9136c9e06c8d4e5be12cc3 https://www.encodeproject.org/files/ENCFF907REL/@@download/ENCFF907REL.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF408XDP bam unfiltered alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF576NTQ, ENCFF686CXJ, ENCFF807MUK 5843185632 ENCODE Processing Pipeline 2b970bf6f9e195b33674a2adb649f8e0 https://www.encodeproject.org/files/ENCFF408XDP/@@download/ENCFF408XDP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF835OKA bam unfiltered alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF226RVI, ENCFF657HVC, ENCFF807MUK 3547793928 ENCODE Processing Pipeline 0bb50228c74e58f7b788d56938e1d9c1 https://www.encodeproject.org/files/ENCFF835OKA/@@download/ENCFF835OKA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF576NTQ fastq reads ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF686CXJ 2671105787 Michael Snyder, Stanford 682d8d1a9f47798139a2a32867c204dd SRA:SRR5111880 https://www.encodeproject.org/files/ENCFF576NTQ/@@download/ENCFF576NTQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF563YDI/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF686CXJ fastq reads ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF576NTQ 2746392917 Michael Snyder, Stanford 009985f9d6f7942335c048a989bd6f01 SRA:SRR5111880 https://www.encodeproject.org/files/ENCFF686CXJ/@@download/ENCFF686CXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF527UFN/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF226RVI fastq reads ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF657HVC 1718255114 Michael Snyder, Stanford e007214feb628febf7f09c7d9721bec8 SRA:SRR5111881 https://www.encodeproject.org/files/ENCFF226RVI/@@download/ENCFF226RVI.fastq.gz Illumina HiSeq 2000 /files/ENCFF563YDI/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF657HVC fastq reads ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF226RVI 1754616546 Michael Snyder, Stanford 7954c2fa3125d93211d432d441ec5791 SRA:SRR5111881 https://www.encodeproject.org/files/ENCFF657HVC/@@download/ENCFF657HVC.fastq.gz Illumina HiSeq 2000 /files/ENCFF527UFN/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF612OEV bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF226RVI, ENCFF657HVC, ENCFF807MUK 2229989443 ENCODE Processing Pipeline 1a8fc0297f472f18b4e34fdb6c54afef https://www.encodeproject.org/files/ENCFF612OEV/@@download/ENCFF612OEV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF248TDS bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF576NTQ, ENCFF686CXJ, ENCFF807MUK 4431718464 ENCODE Processing Pipeline 0354240942e9476db91f6d0873a088e2 https://www.encodeproject.org/files/ENCFF248TDS/@@download/ENCFF248TDS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF811CHX bigWig signal p-value ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF061ITH, ENCFF248TDS 1010531071 ENCODE Processing Pipeline 08648ccd4ef1fbd834ef25d14a090a51 https://www.encodeproject.org/files/ENCFF811CHX/@@download/ENCFF811CHX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF054GAR bigWig signal p-value ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF061ITH, ENCFF248TDS, ENCFF612OEV 1220965073 ENCODE Processing Pipeline a4b95eb27ad8924f6e8b4fe2099900e7 https://www.encodeproject.org/files/ENCFF054GAR/@@download/ENCFF054GAR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF179IIL bigWig signal p-value ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF061ITH, ENCFF612OEV 877426260 ENCODE Processing Pipeline 1c0c0fc8a73b583ee3c0d49a3771d11a https://www.encodeproject.org/files/ENCFF179IIL/@@download/ENCFF179IIL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF597QZO bigWig fold change over control ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF061ITH, ENCFF248TDS 1057141373 ENCODE Processing Pipeline 1570bc78e7ad43d4e55cc3920a6665af https://www.encodeproject.org/files/ENCFF597QZO/@@download/ENCFF597QZO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF004DKX bigWig fold change over control ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF061ITH, ENCFF612OEV 697429118 ENCODE Processing Pipeline e4eae63a415651352edd3ea829415de3 https://www.encodeproject.org/files/ENCFF004DKX/@@download/ENCFF004DKX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF627BPL bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF061ITH, ENCFF248TDS 5814015 ENCODE Processing Pipeline 8c7679a34fda59f121cf043aaec21874 https://www.encodeproject.org/files/ENCFF627BPL/@@download/ENCFF627BPL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF167ABJ bigWig fold change over control ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF061ITH, ENCFF248TDS, ENCFF612OEV 1375371736 ENCODE Processing Pipeline 69b062d038e2b1bf4e593f16f6247568 https://www.encodeproject.org/files/ENCFF167ABJ/@@download/ENCFF167ABJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF771POP bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF061ITH, ENCFF612OEV 5393271 ENCODE Processing Pipeline 3d5ccbf5d23405626938d5298e2ab55d https://www.encodeproject.org/files/ENCFF771POP/@@download/ENCFF771POP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF054OPO bigBed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF627BPL 11246870 ENCODE Processing Pipeline 7b3ee9faa8c6c907aceaf3d0fb06a9fe https://www.encodeproject.org/files/ENCFF054OPO/@@download/ENCFF054OPO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF210DGM bigBed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF197SSW 11318731 ENCODE Processing Pipeline 44fc03c87b27d3814bf917277ed2e592 https://www.encodeproject.org/files/ENCFF210DGM/@@download/ENCFF210DGM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF944IDH bigBed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF771POP 11297636 ENCODE Processing Pipeline 1d59f8ffa0aefdc2e3a66c1243799eeb https://www.encodeproject.org/files/ENCFF944IDH/@@download/ENCFF944IDH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF197SSW bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF061ITH, ENCFF248TDS, ENCFF612OEV 6618308 ENCODE Processing Pipeline b541c750fffb322010bdc55c943f7fd6 https://www.encodeproject.org/files/ENCFF197SSW/@@download/ENCFF197SSW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF383VZD bam unfiltered alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF226RVI, ENCFF643CGH, ENCFF657HVC 3547693251 ENCODE Processing Pipeline 03427e61971d9a6c2afa080b2555c81d https://www.encodeproject.org/files/ENCFF383VZD/@@download/ENCFF383VZD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF700LWP bam unfiltered alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF576NTQ, ENCFF643CGH, ENCFF686CXJ 5850210068 ENCODE Processing Pipeline 2f5199e4e4029f7ecd2f91c1d6381e71 https://www.encodeproject.org/files/ENCFF700LWP/@@download/ENCFF700LWP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF027QPB bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF226RVI, ENCFF643CGH, ENCFF657HVC 2231094102 ENCODE Processing Pipeline e7b065d1c84b3780c0d6d7f7261d6be4 https://www.encodeproject.org/files/ENCFF027QPB/@@download/ENCFF027QPB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF697TDR bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF576NTQ, ENCFF643CGH, ENCFF686CXJ 4435627022 ENCODE Processing Pipeline ecbc7fde430469c31a45749f89d3c183 https://www.encodeproject.org/files/ENCFF697TDR/@@download/ENCFF697TDR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF764YKN bigWig signal p-value ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF172LMI, ENCFF697TDR 859866849 ENCODE Processing Pipeline 7c93069868a3925a4d4af0d1e37007fc https://www.encodeproject.org/files/ENCFF764YKN/@@download/ENCFF764YKN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF355ZSW bigWig signal p-value ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF027QPB, ENCFF172LMI 715066828 ENCODE Processing Pipeline b53fe85d2d199109fa8ac1e4dd2aed3d https://www.encodeproject.org/files/ENCFF355ZSW/@@download/ENCFF355ZSW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF236VWP bigWig signal p-value ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF027QPB, ENCFF172LMI, ENCFF697TDR 1223094247 ENCODE Processing Pipeline 26c6db04c11beeb8c5d4cd569d280f0a https://www.encodeproject.org/files/ENCFF236VWP/@@download/ENCFF236VWP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF107GQE bigWig fold change over control ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF172LMI, ENCFF697TDR 1051752455 ENCODE Processing Pipeline f6327838a50d4e130060b1983b8d37dc https://www.encodeproject.org/files/ENCFF107GQE/@@download/ENCFF107GQE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF006FKE bigWig fold change over control ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF027QPB, ENCFF172LMI 701611074 ENCODE Processing Pipeline 32ae0b0775dff3f79390c7f7ae9263b1 https://www.encodeproject.org/files/ENCFF006FKE/@@download/ENCFF006FKE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF893XQZ bigWig fold change over control ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF027QPB, ENCFF172LMI, ENCFF697TDR 1378883619 ENCODE Processing Pipeline b207bff071a809017942b2aae48f0fc5 https://www.encodeproject.org/files/ENCFF893XQZ/@@download/ENCFF893XQZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF036WLT bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF027QPB, ENCFF172LMI, ENCFF697TDR 6487631 ENCODE Processing Pipeline 6a9877e4e7402be4b22d943ea78e1bcb https://www.encodeproject.org/files/ENCFF036WLT/@@download/ENCFF036WLT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF965PAJ bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF172LMI, ENCFF697TDR 5624139 ENCODE Processing Pipeline 596a06b3d80c2db7283c68849a1f18d2 https://www.encodeproject.org/files/ENCFF965PAJ/@@download/ENCFF965PAJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF618AYC bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF027QPB, ENCFF172LMI 5214328 ENCODE Processing Pipeline 2f31d75de475baa141c1f14b50defc92 https://www.encodeproject.org/files/ENCFF618AYC/@@download/ENCFF618AYC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF151XIQ bigBed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF965PAJ 11243983 ENCODE Processing Pipeline 7729b39b2b2324a0bf1e04aebfcaff5d https://www.encodeproject.org/files/ENCFF151XIQ/@@download/ENCFF151XIQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF584ZWQ bigBed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF618AYC 11254788 ENCODE Processing Pipeline b0fbc4b138dbcc74e6535b9398cfc5bf https://www.encodeproject.org/files/ENCFF584ZWQ/@@download/ENCFF584ZWQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF671YEU bed narrowPeak conservative idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF036WLT, ENCFF419RSJ, ENCFF618AYC, ENCFF965PAJ 92544 ENCODE Processing Pipeline 74c3e5e5af4dc07e2646029ddfea9492 https://www.encodeproject.org/files/ENCFF671YEU/@@download/ENCFF671YEU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF411JLJ bigBed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF036WLT 11312622 ENCODE Processing Pipeline e5acb86f494e1c662c4411c6c6f08d68 https://www.encodeproject.org/files/ENCFF411JLJ/@@download/ENCFF411JLJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF592SAM bigBed narrowPeak conservative idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF671YEU 212635 ENCODE Processing Pipeline 7c9256c5db0c7f09276861b4681740b9 https://www.encodeproject.org/files/ENCFF592SAM/@@download/ENCFF592SAM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF462UJN bed narrowPeak optimal idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF036WLT, ENCFF419RSJ, ENCFF618AYC, ENCFF965PAJ 134560 ENCODE Processing Pipeline 0957a51663a33df2a2c21557e67817b1 https://www.encodeproject.org/files/ENCFF462UJN/@@download/ENCFF462UJN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF385NYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF462UJN 269980 ENCODE Processing Pipeline f1583e411494110e11c341d02875dda3 https://www.encodeproject.org/files/ENCFF385NYZ/@@download/ENCFF385NYZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF175IUO bed narrowPeak optimal idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF197SSW, ENCFF627BPL, ENCFF771POP 115143 ENCODE Processing Pipeline 1da9412addcc8fdacab4a65d0a9098ce https://www.encodeproject.org/files/ENCFF175IUO/@@download/ENCFF175IUO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF625IYZ bed narrowPeak conservative idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF197SSW, ENCFF627BPL, ENCFF771POP 80810 ENCODE Processing Pipeline 1c6ae16b5a084d64eaf41776e98d524f https://www.encodeproject.org/files/ENCFF625IYZ/@@download/ENCFF625IYZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF737IHD bigBed narrowPeak conservative idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF625IYZ 194343 ENCODE Processing Pipeline 0b71ac85275fbe4f54470c166c5ba8d5 https://www.encodeproject.org/files/ENCFF737IHD/@@download/ENCFF737IHD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF799JIT bigBed narrowPeak optimal idr thresholded peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF175IUO 239558 ENCODE Processing Pipeline 8cdfaa993290699915067963320c7e9a https://www.encodeproject.org/files/ENCFF799JIT/@@download/ENCFF799JIT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF271YWH bam unfiltered alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF197WLE, ENCFF320OTV, ENCFF807MUK 1400874933 ENCODE Processing Pipeline 49ea5a1b585d1606e1e88fe512446733 https://www.encodeproject.org/files/ENCFF271YWH/@@download/ENCFF271YWH.bam hg19 released control low read depth, missing genetic modification characterization ENCFF368YOV bam unfiltered alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF494KWC, ENCFF807MUK, ENCFF826QKF 1244681194 ENCODE Processing Pipeline 22683f2dc79ce88028a0ecc01e53cfe6 https://www.encodeproject.org/files/ENCFF368YOV/@@download/ENCFF368YOV.bam hg19 released control low read depth, missing genetic modification characterization ENCFF494KWC fastq reads ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 371897175 Kevin White, UChicago b07dcd053cc67cc824926c5234044209 SRA:SRR6212917 https://www.encodeproject.org/files/ENCFF494KWC/@@download/ENCFF494KWC.fastq.gz Illumina HiSeq 2500 /files/ENCFF838XWS/ released control low read depth, missing genetic modification characterization ENCFF197WLE fastq reads ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 472605334 Kevin White, UChicago 04c6424b7ff5304d346ec58c91005a3b SRA:SRR6212915 https://www.encodeproject.org/files/ENCFF197WLE/@@download/ENCFF197WLE.fastq.gz Illumina HiSeq 2500 /files/ENCFF838XWS/ released control low read depth, missing genetic modification characterization ENCFF826QKF fastq reads ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 742513811 Kevin White, UChicago 1ce75266cb6af1d2276eea2fa68b82d7 SRA:SRR6212918 https://www.encodeproject.org/files/ENCFF826QKF/@@download/ENCFF826QKF.fastq.gz Illumina HiSeq 2500 /files/ENCFF838XWS/ released control low read depth, missing genetic modification characterization ENCFF320OTV fastq reads ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 770838468 Kevin White, UChicago f2c71ec20948c6480ba37bd5c122b9a3 SRA:SRR6212916 https://www.encodeproject.org/files/ENCFF320OTV/@@download/ENCFF320OTV.fastq.gz Illumina HiSeq 2500 /files/ENCFF838XWS/ released control low read depth, missing genetic modification characterization ENCFF107DVQ bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF494KWC, ENCFF807MUK, ENCFF826QKF 959918153 ENCODE Processing Pipeline 598545f9ea0cc5eb9c2a3b149ed4a013 https://www.encodeproject.org/files/ENCFF107DVQ/@@download/ENCFF107DVQ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF121MMO bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF197WLE, ENCFF320OTV, ENCFF807MUK 1097225865 ENCODE Processing Pipeline c7218d78fffe1a45482059cf566987b5 https://www.encodeproject.org/files/ENCFF121MMO/@@download/ENCFF121MMO.bam hg19 released control low read depth, missing genetic modification characterization ENCFF795RZC bigWig signal p-value ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF107DVQ, ENCFF951BLJ 421581921 ENCODE Processing Pipeline 79719573d431aa3f965774f089fc415c https://www.encodeproject.org/files/ENCFF795RZC/@@download/ENCFF795RZC.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF904IPO bigWig signal p-value ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF121MMO, ENCFF951BLJ 456776130 ENCODE Processing Pipeline 018584e45fd158da496416b527bcb311 https://www.encodeproject.org/files/ENCFF904IPO/@@download/ENCFF904IPO.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF135DHK bigWig fold change over control ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF121MMO, ENCFF951BLJ 468300768 ENCODE Processing Pipeline 8cb722d41c01291841aa292297daa8f8 https://www.encodeproject.org/files/ENCFF135DHK/@@download/ENCFF135DHK.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF912HUI bigWig signal p-value ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF107DVQ, ENCFF121MMO, ENCFF951BLJ 419222309 ENCODE Processing Pipeline ac17c0cafcaad4c2f10669ab09214312 https://www.encodeproject.org/files/ENCFF912HUI/@@download/ENCFF912HUI.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF769QZE bigWig fold change over control ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF107DVQ, ENCFF121MMO, ENCFF951BLJ 712953870 ENCODE Processing Pipeline fdda111d061e0f5870130554729f44d3 https://www.encodeproject.org/files/ENCFF769QZE/@@download/ENCFF769QZE.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF578QVH bigWig fold change over control ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF107DVQ, ENCFF951BLJ 423647080 ENCODE Processing Pipeline c06daa76cea1d8e660c72c7c8a5d124e https://www.encodeproject.org/files/ENCFF578QVH/@@download/ENCFF578QVH.bigWig hg19 released control low read depth, missing genetic modification characterization ENCFF010BGE bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF121MMO, ENCFF951BLJ 6256959 ENCODE Processing Pipeline 9b284f55a568bf23aa152ea8203a265a https://www.encodeproject.org/files/ENCFF010BGE/@@download/ENCFF010BGE.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF364SQI bigBed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF010BGE 13038413 ENCODE Processing Pipeline 8c86a97bf3bb3882038f94619ed050a2 https://www.encodeproject.org/files/ENCFF364SQI/@@download/ENCFF364SQI.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF758WOZ bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF107DVQ, ENCFF121MMO, ENCFF951BLJ 6694983 ENCODE Processing Pipeline 107d4f48915dc6bd8f07d9fa97464d78 https://www.encodeproject.org/files/ENCFF758WOZ/@@download/ENCFF758WOZ.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF813QPT bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF107DVQ, ENCFF951BLJ 6170472 ENCODE Processing Pipeline 4d42ef9f5b09bb4ed91ffe708bb6f317 https://www.encodeproject.org/files/ENCFF813QPT/@@download/ENCFF813QPT.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF888EUI bigBed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF758WOZ 12807434 ENCODE Processing Pipeline 6c361a1ef16a890585d2c4f561797efa https://www.encodeproject.org/files/ENCFF888EUI/@@download/ENCFF888EUI.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF631VJI bigBed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF813QPT 13074654 ENCODE Processing Pipeline 553f6e93c9d0f9615d9e7a0a681b6136 https://www.encodeproject.org/files/ENCFF631VJI/@@download/ENCFF631VJI.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF012WGB bam unfiltered alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF197WLE, ENCFF320OTV, ENCFF643CGH 1407490188 ENCODE Processing Pipeline bdab2f6bec9f4b90ff8a29a1ea7eb9f1 https://www.encodeproject.org/files/ENCFF012WGB/@@download/ENCFF012WGB.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF098YSL bam unfiltered alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF494KWC, ENCFF643CGH, ENCFF826QKF 1249529542 ENCODE Processing Pipeline e3ded5e9efd724d77cb3a1d36d43cbd4 https://www.encodeproject.org/files/ENCFF098YSL/@@download/ENCFF098YSL.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF589UVV bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF197WLE, ENCFF320OTV, ENCFF643CGH 1096748832 ENCODE Processing Pipeline a9fcc96c0b62ccf20ed267cce16daae0 https://www.encodeproject.org/files/ENCFF589UVV/@@download/ENCFF589UVV.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF060WJH bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF494KWC, ENCFF643CGH, ENCFF826QKF 959471091 ENCODE Processing Pipeline eb4e3abed1fd9fd12eef0567dfc48baf https://www.encodeproject.org/files/ENCFF060WJH/@@download/ENCFF060WJH.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF051GPS bigWig signal p-value ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF060WJH, ENCFF322EZT 421115538 ENCODE Processing Pipeline dbcb7b8e59a4afbca50c4b4dd33bd993 https://www.encodeproject.org/files/ENCFF051GPS/@@download/ENCFF051GPS.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF893ZTX bigWig signal p-value ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF060WJH, ENCFF322EZT, ENCFF589UVV 428728630 ENCODE Processing Pipeline 0e967c5c3303a1d03cecf34a98913d4c https://www.encodeproject.org/files/ENCFF893ZTX/@@download/ENCFF893ZTX.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF106FBD bigWig signal p-value ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF322EZT, ENCFF589UVV 456905963 ENCODE Processing Pipeline c5408667f153466b3e2d1ccab048b995 https://www.encodeproject.org/files/ENCFF106FBD/@@download/ENCFF106FBD.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF501NLR bigWig fold change over control ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF322EZT, ENCFF589UVV 468394824 ENCODE Processing Pipeline f9dc7405918073c7e20d7ad9a42ddd7f https://www.encodeproject.org/files/ENCFF501NLR/@@download/ENCFF501NLR.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF750FXL bigWig fold change over control ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF060WJH, ENCFF322EZT 419953857 ENCODE Processing Pipeline 9ae9e6e2a8686aa9ef211fec9f73ab2d https://www.encodeproject.org/files/ENCFF750FXL/@@download/ENCFF750FXL.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF897IOX bigWig fold change over control ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF060WJH, ENCFF322EZT, ENCFF589UVV 723392990 ENCODE Processing Pipeline b9b91621f5b2a88385ea889a93f39d83 https://www.encodeproject.org/files/ENCFF897IOX/@@download/ENCFF897IOX.bigWig GRCh38 released control low read depth, missing genetic modification characterization ENCFF415OJD bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF060WJH, ENCFF322EZT 5840560 ENCODE Processing Pipeline 888f8eaafd33a1c952ea953660c91eb0 https://www.encodeproject.org/files/ENCFF415OJD/@@download/ENCFF415OJD.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF784YPB bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF322EZT, ENCFF589UVV 5930672 ENCODE Processing Pipeline 94db2b8e35b7a93691af28503050c860 https://www.encodeproject.org/files/ENCFF784YPB/@@download/ENCFF784YPB.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF169EQA bigBed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF784YPB 13032421 ENCODE Processing Pipeline 2b47d7ceda2a8070964c8c4e799043b2 https://www.encodeproject.org/files/ENCFF169EQA/@@download/ENCFF169EQA.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF635HBX bigBed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF415OJD 13069982 ENCODE Processing Pipeline 225717354b1e12947b5ac6b879c37a58 https://www.encodeproject.org/files/ENCFF635HBX/@@download/ENCFF635HBX.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF600ROI bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF060WJH, ENCFF322EZT, ENCFF589UVV 6470516 ENCODE Processing Pipeline aa321ed0fce3bebf036b4ba8b5e7063e https://www.encodeproject.org/files/ENCFF600ROI/@@download/ENCFF600ROI.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF834DYD bed narrowPeak conservative idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF415OJD, ENCFF419RSJ, ENCFF600ROI, ENCFF784YPB 130470 ENCODE Processing Pipeline f83c01e48d1a2b8c0230d9bc25eaf31b https://www.encodeproject.org/files/ENCFF834DYD/@@download/ENCFF834DYD.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF697RVN bigBed narrowPeak conservative idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF834DYD 368616 ENCODE Processing Pipeline 72632c6f3a0f884d1d23fc6312bf08a6 https://www.encodeproject.org/files/ENCFF697RVN/@@download/ENCFF697RVN.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF082KHJ bed narrowPeak optimal idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF415OJD, ENCFF419RSJ, ENCFF600ROI, ENCFF784YPB 134726 ENCODE Processing Pipeline 3b1111bf5ab82af96120034a079d77bd https://www.encodeproject.org/files/ENCFF082KHJ/@@download/ENCFF082KHJ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization ENCFF364UJT bigBed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF600ROI 12826471 ENCODE Processing Pipeline 23cd3179529613035d0af1ead1d82d5d https://www.encodeproject.org/files/ENCFF364UJT/@@download/ENCFF364UJT.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF269RQQ bigBed narrowPeak optimal idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF082KHJ 378012 ENCODE Processing Pipeline d30e11897afb514502b5f9a8c47e1e4c https://www.encodeproject.org/files/ENCFF269RQQ/@@download/ENCFF269RQQ.bigBed GRCh38 released control low read depth, missing genetic modification characterization ENCFF615DHV bigBed narrowPeak conservative idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF193JMA 229684 ENCODE Processing Pipeline 4cf9fdd390359411ab8907f0cc145da8 https://www.encodeproject.org/files/ENCFF615DHV/@@download/ENCFF615DHV.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF526PFS bigBed narrowPeak optimal idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF695CPH 237417 ENCODE Processing Pipeline 8a63a316a9517ceb83d38258b2da002b https://www.encodeproject.org/files/ENCFF526PFS/@@download/ENCFF526PFS.bigBed hg19 released control low read depth, missing genetic modification characterization ENCFF193JMA bed narrowPeak conservative idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF010BGE, ENCFF758WOZ, ENCFF813QPT 102641 ENCODE Processing Pipeline 12255b4dde9525ae83bc9ac4df57ba38 https://www.encodeproject.org/files/ENCFF193JMA/@@download/ENCFF193JMA.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF695CPH bed narrowPeak optimal idr thresholded peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF010BGE, ENCFF758WOZ, ENCFF813QPT 108206 ENCODE Processing Pipeline 84c3f2ea4e6958d0b457e43c2470ec24 https://www.encodeproject.org/files/ENCFF695CPH/@@download/ENCFF695CPH.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF372LTI fastq reads ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1667799612 Richard Myers, HAIB c567c797ea599cad1a9bc87479d73f90 SRA:SRR5338818 https://www.encodeproject.org/files/ENCFF372LTI/@@download/ENCFF372LTI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF061MRR fastq reads ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1346440312 Richard Myers, HAIB 086c6798cad29485f37fc44475aa645f SRA:SRR5338819 https://www.encodeproject.org/files/ENCFF061MRR/@@download/ENCFF061MRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF203MXG bam unfiltered alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 76 ENCFF061MRR, ENCFF643CGH 1433156705 ENCODE Processing Pipeline 80ef960c76760b314140a8cf5b34d15d https://www.encodeproject.org/files/ENCFF203MXG/@@download/ENCFF203MXG.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF740CQC bam unfiltered alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 76 ENCFF372LTI, ENCFF643CGH 1817088567 ENCODE Processing Pipeline c75f867d8bffa185645535137656d1ae https://www.encodeproject.org/files/ENCFF740CQC/@@download/ENCFF740CQC.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF106AZQ bam unfiltered alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 76 ENCFF372LTI, ENCFF807MUK 1812255220 ENCODE Processing Pipeline d8b70163c998df11a74f2620b28080ac https://www.encodeproject.org/files/ENCFF106AZQ/@@download/ENCFF106AZQ.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF844WNO bam unfiltered alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 76 ENCFF061MRR, ENCFF807MUK 1430868694 ENCODE Processing Pipeline 3f7330f5ba96a8f12ca392c4b1d61ede https://www.encodeproject.org/files/ENCFF844WNO/@@download/ENCFF844WNO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF047TEL bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 76 ENCFF061MRR, ENCFF643CGH 1095449706 ENCODE Processing Pipeline 7a1f655b6da97f7662a7af7b934cee3a https://www.encodeproject.org/files/ENCFF047TEL/@@download/ENCFF047TEL.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF901MSA bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 76 ENCFF372LTI, ENCFF643CGH 1374690962 ENCODE Processing Pipeline 86fbfc1503423f7697bc086998f5ab3f https://www.encodeproject.org/files/ENCFF901MSA/@@download/ENCFF901MSA.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF229FNO bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 76 ENCFF372LTI, ENCFF807MUK 1373618882 ENCODE Processing Pipeline 2aef3b9eee4c65c9cfa4753aa0e35a6a https://www.encodeproject.org/files/ENCFF229FNO/@@download/ENCFF229FNO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF054DOO bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 76 ENCFF061MRR, ENCFF807MUK 1095074823 ENCODE Processing Pipeline 8ff6d6a837219c3a152fa0c0b3c5f6a6 https://www.encodeproject.org/files/ENCFF054DOO/@@download/ENCFF054DOO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF343LPH bigWig signal p-value ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF047TEL 496527818 ENCODE Processing Pipeline 468ec65507292bc8880538f49fa9dc31 https://www.encodeproject.org/files/ENCFF343LPH/@@download/ENCFF343LPH.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF291XEC bigWig signal p-value ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF047TEL, ENCFF901MSA 681342375 ENCODE Processing Pipeline 06dfa2b0ea868de48455d91f917d56e0 https://www.encodeproject.org/files/ENCFF291XEC/@@download/ENCFF291XEC.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF644DUZ bigWig signal p-value ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF901MSA 656033062 ENCODE Processing Pipeline 9ee9cb6477f95be423ad9e272ad88124 https://www.encodeproject.org/files/ENCFF644DUZ/@@download/ENCFF644DUZ.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF206HKL bigWig fold change over control ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF901MSA 509292227 ENCODE Processing Pipeline 9638f6e2779f7315db75ad331ef284e7 https://www.encodeproject.org/files/ENCFF206HKL/@@download/ENCFF206HKL.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF774BPK bigWig fold change over control ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF047TEL 433372382 ENCODE Processing Pipeline 56fbc2155144434cd184066eb0bf3ff4 https://www.encodeproject.org/files/ENCFF774BPK/@@download/ENCFF774BPK.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF120NLZ bigWig fold change over control ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF047TEL, ENCFF901MSA 793625600 ENCODE Processing Pipeline 32d747ffbbca7ae73065bfac16f4eba7 https://www.encodeproject.org/files/ENCFF120NLZ/@@download/ENCFF120NLZ.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003BNZ bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF047TEL 5825013 ENCODE Processing Pipeline 5f057e86f61d50ebc6720b4e43187ef4 https://www.encodeproject.org/files/ENCFF003BNZ/@@download/ENCFF003BNZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF897NDM bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF047TEL, ENCFF901MSA 6391328 ENCODE Processing Pipeline de8833f6e83f274fa739284aaa8bbe98 https://www.encodeproject.org/files/ENCFF897NDM/@@download/ENCFF897NDM.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF487JWC bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF901MSA 5074835 ENCODE Processing Pipeline 9034dc9224253d9c2850db77f0d25fba https://www.encodeproject.org/files/ENCFF487JWC/@@download/ENCFF487JWC.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF279PDV bigBed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF487JWC 11124585 ENCODE Processing Pipeline 0b33d15bc0c7b4cc9ab71358e0a3c47d https://www.encodeproject.org/files/ENCFF279PDV/@@download/ENCFF279PDV.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF006FQA bigBed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF003BNZ 13025506 ENCODE Processing Pipeline 8accefd4210a7e841aad5d2c2f4d3b45 https://www.encodeproject.org/files/ENCFF006FQA/@@download/ENCFF006FQA.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF852VOW bigBed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF897NDM 13341971 ENCODE Processing Pipeline c85d953286cf3c305271595bec8c328a https://www.encodeproject.org/files/ENCFF852VOW/@@download/ENCFF852VOW.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF260DMD bed narrowPeak conservative idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF003BNZ, ENCFF419RSJ, ENCFF487JWC, ENCFF897NDM 199498 ENCODE Processing Pipeline 2d23de196ad4991815a4ac86b94eb240 https://www.encodeproject.org/files/ENCFF260DMD/@@download/ENCFF260DMD.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF450SOR bigBed narrowPeak conservative idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF260DMD 421335 ENCODE Processing Pipeline dfbed168c34e6768330c2d5bde2241bc https://www.encodeproject.org/files/ENCFF450SOR/@@download/ENCFF450SOR.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF761HIZ bed narrowPeak optimal idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF003BNZ, ENCFF419RSJ, ENCFF487JWC, ENCFF897NDM 283764 ENCODE Processing Pipeline 2439adff029be0bbda115279fb8ffdee https://www.encodeproject.org/files/ENCFF761HIZ/@@download/ENCFF761HIZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF999AZX bigBed narrowPeak optimal idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF761HIZ 537513 ENCODE Processing Pipeline 53d619aa714d8753f7e3e45c3c194473 https://www.encodeproject.org/files/ENCFF999AZX/@@download/ENCFF999AZX.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF983UZN bigWig signal p-value ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF054DOO, ENCFF203ABR 1090908353 ENCODE Processing Pipeline d6373925e861d150795c90f17947fea7 https://www.encodeproject.org/files/ENCFF983UZN/@@download/ENCFF983UZN.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF647GRU bigWig signal p-value ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF229FNO 1180066958 ENCODE Processing Pipeline 6da00514f732eecfd51ee7142a13e743 https://www.encodeproject.org/files/ENCFF647GRU/@@download/ENCFF647GRU.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF475VFG bigWig fold change over control ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF054DOO, ENCFF203ABR 822665688 ENCODE Processing Pipeline a6c5fd2576edc2dc224c2610f62ed5af https://www.encodeproject.org/files/ENCFF475VFG/@@download/ENCFF475VFG.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF143KET bigWig signal p-value ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF054DOO, ENCFF203ABR, ENCFF229FNO 1341460719 ENCODE Processing Pipeline 528edd1407a7eacefa1584e5fae90bb3 https://www.encodeproject.org/files/ENCFF143KET/@@download/ENCFF143KET.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738SEX bigWig fold change over control ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF229FNO 938083558 ENCODE Processing Pipeline 7b84337d28b18d453c9107f53c4d0145 https://www.encodeproject.org/files/ENCFF738SEX/@@download/ENCFF738SEX.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF509VMF bigWig fold change over control ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF054DOO, ENCFF203ABR, ENCFF229FNO 1397033413 ENCODE Processing Pipeline f296b986ad9c387923466f51e8086fe3 https://www.encodeproject.org/files/ENCFF509VMF/@@download/ENCFF509VMF.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321SGB bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF054DOO, ENCFF203ABR 6551829 ENCODE Processing Pipeline c143228d4d5a01de8a82a3a624d1f32e https://www.encodeproject.org/files/ENCFF321SGB/@@download/ENCFF321SGB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF494IEN bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF229FNO 5964459 ENCODE Processing Pipeline 4e82e7399dff5dd67cb91e195f21589b https://www.encodeproject.org/files/ENCFF494IEN/@@download/ENCFF494IEN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF307BCB bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF054DOO, ENCFF203ABR, ENCFF229FNO 6877974 ENCODE Processing Pipeline 20177e4c9299ffa4d287740fc9e79c37 https://www.encodeproject.org/files/ENCFF307BCB/@@download/ENCFF307BCB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF845IXQ bigBed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF321SGB 13150337 ENCODE Processing Pipeline 0824719d881109a623a875acd9cd37b0 https://www.encodeproject.org/files/ENCFF845IXQ/@@download/ENCFF845IXQ.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF209ZDV bigBed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF494IEN 11456437 ENCODE Processing Pipeline aa79463742da7170ab69f3c5e1ba3325 https://www.encodeproject.org/files/ENCFF209ZDV/@@download/ENCFF209ZDV.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF675PJC bigBed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF307BCB 13347637 ENCODE Processing Pipeline aa9cf122f9fd2474087593764b343f97 https://www.encodeproject.org/files/ENCFF675PJC/@@download/ENCFF675PJC.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF680TTG bigBed narrowPeak conservative idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF090HSK 429123 ENCODE Processing Pipeline d6d4a5738f39184c06fd5cc60ce74f41 https://www.encodeproject.org/files/ENCFF680TTG/@@download/ENCFF680TTG.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF090HSK bed narrowPeak conservative idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF307BCB, ENCFF321SGB, ENCFF494IEN 197883 ENCODE Processing Pipeline 8f07585c26f97642edcfabb3a4473b19 https://www.encodeproject.org/files/ENCFF090HSK/@@download/ENCFF090HSK.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262NLN bed narrowPeak optimal idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF307BCB, ENCFF321SGB, ENCFF494IEN 267714 ENCODE Processing Pipeline 02b377ad2dacf738d5216e2c01733a4c https://www.encodeproject.org/files/ENCFF262NLN/@@download/ENCFF262NLN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF106AUB bigBed narrowPeak optimal idr thresholded peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF262NLN 524096 ENCODE Processing Pipeline 13421f0eb8bc6b99401ba1516bfdd95d https://www.encodeproject.org/files/ENCFF106AUB/@@download/ENCFF106AUB.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF781KGN fastq reads ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 1 76 single-ended 2809305022 Richard Myers, HAIB 619e753d093a8f062622f63696723781 https://www.encodeproject.org/files/ENCFF781KGN/@@download/ENCFF781KGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF004FGD bam unfiltered alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 76 ENCFF643CGH, ENCFF781KGN 3130419246 ENCODE Processing Pipeline 066ca5ea5f2b43284c0795e511ab19cd https://www.encodeproject.org/files/ENCFF004FGD/@@download/ENCFF004FGD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF143BSX bam unfiltered alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 76 ENCFF781KGN, ENCFF807MUK 3124980932 ENCODE Processing Pipeline aac27d23b805ed053ef0d2146c65dc5b https://www.encodeproject.org/files/ENCFF143BSX/@@download/ENCFF143BSX.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF939ZVD bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 76 ENCFF643CGH, ENCFF781KGN 2385943753 ENCODE Processing Pipeline 29ef95fd30a5a285592a75a736b7d9a8 https://www.encodeproject.org/files/ENCFF939ZVD/@@download/ENCFF939ZVD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF383BUZ bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 76 ENCFF781KGN, ENCFF807MUK 2384970860 ENCODE Processing Pipeline 207afc9cc4d30b0a66f317e65f4fea93 https://www.encodeproject.org/files/ENCFF383BUZ/@@download/ENCFF383BUZ.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF681GXU fastq reads ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 1 76 single-ended 1901518003 Richard Myers, HAIB f78da23012b391d7dc8d32c68905c733 https://www.encodeproject.org/files/ENCFF681GXU/@@download/ENCFF681GXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF315TMT bam unfiltered alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 76 ENCFF643CGH, ENCFF681GXU 2184253699 ENCODE Processing Pipeline 22b1d756215a9fb77b7ac53e18e2fd1b https://www.encodeproject.org/files/ENCFF315TMT/@@download/ENCFF315TMT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF047FIB bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 76 ENCFF643CGH, ENCFF681GXU 1565529989 ENCODE Processing Pipeline 2a5f9d85fb746ea845be3d6739931814 https://www.encodeproject.org/files/ENCFF047FIB/@@download/ENCFF047FIB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF948MCY bam unfiltered alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 76 ENCFF681GXU, ENCFF807MUK 2180738222 ENCODE Processing Pipeline a05e3dc4e457a71728f6d813ad59d31c https://www.encodeproject.org/files/ENCFF948MCY/@@download/ENCFF948MCY.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF644EWQ bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 76 ENCFF681GXU, ENCFF807MUK 1564950061 ENCODE Processing Pipeline 685632d2a1a716ae47a60f29710b5b19 https://www.encodeproject.org/files/ENCFF644EWQ/@@download/ENCFF644EWQ.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF778BNL bigWig signal p-value ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF047FIB 491126307 ENCODE Processing Pipeline daae5d56880e36a44273c60a3fe9aa6b https://www.encodeproject.org/files/ENCFF778BNL/@@download/ENCFF778BNL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF508UYX bigWig fold change over control ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF047FIB 535477252 ENCODE Processing Pipeline 764acb7ecbcfe0b7add672513f848793 https://www.encodeproject.org/files/ENCFF508UYX/@@download/ENCFF508UYX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF500UUQ bigWig signal p-value ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF644EWQ 489913864 ENCODE Processing Pipeline f14c7c55190587d3687ea2ab208caa61 https://www.encodeproject.org/files/ENCFF500UUQ/@@download/ENCFF500UUQ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF004TVW bigWig signal p-value ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF383BUZ 658931419 ENCODE Processing Pipeline a39523c373e52504337b6e31b43a257f https://www.encodeproject.org/files/ENCFF004TVW/@@download/ENCFF004TVW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF691YKY bigWig fold change over control ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF383BUZ 813862108 ENCODE Processing Pipeline 141fdf4822571da4997bcab3a1ed927b https://www.encodeproject.org/files/ENCFF691YKY/@@download/ENCFF691YKY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF918ZEW bigWig signal p-value ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF383BUZ, ENCFF644EWQ 644375931 ENCODE Processing Pipeline 1b478fddf61186966680aca9d7294e68 https://www.encodeproject.org/files/ENCFF918ZEW/@@download/ENCFF918ZEW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF066OFZ bigWig signal p-value ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF047FIB, ENCFF939ZVD 651142132 ENCODE Processing Pipeline 0b8836b3da143f8c57cd006f39db0b17 https://www.encodeproject.org/files/ENCFF066OFZ/@@download/ENCFF066OFZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF326OIC bigWig fold change over control ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF644EWQ 535936913 ENCODE Processing Pipeline 36179832d4fbcde7aaff224c45266e7e https://www.encodeproject.org/files/ENCFF326OIC/@@download/ENCFF326OIC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF922HDW bigWig signal p-value ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF939ZVD 646404824 ENCODE Processing Pipeline d31f232f6bba26a9086b4578fd5edea6 https://www.encodeproject.org/files/ENCFF922HDW/@@download/ENCFF922HDW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF874WIV bigWig fold change over control ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF939ZVD 796489466 ENCODE Processing Pipeline 9450ce1fcbe5a70676439dc5236949ed https://www.encodeproject.org/files/ENCFF874WIV/@@download/ENCFF874WIV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF038VGM bigWig fold change over control ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF383BUZ, ENCFF644EWQ 1156664011 ENCODE Processing Pipeline dba1c46a94bac94a2737c7db6a694f09 https://www.encodeproject.org/files/ENCFF038VGM/@@download/ENCFF038VGM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF451NAF bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF383BUZ 6933102 ENCODE Processing Pipeline 7cf94c7d878ced840e2b2e1054cbbb08 https://www.encodeproject.org/files/ENCFF451NAF/@@download/ENCFF451NAF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF159LQN bigWig fold change over control ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF047FIB, ENCFF939ZVD 1166470767 ENCODE Processing Pipeline 555444d236834833d04b36bfcd01112a https://www.encodeproject.org/files/ENCFF159LQN/@@download/ENCFF159LQN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF088RCG bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF644EWQ 6604906 ENCODE Processing Pipeline 708396ed208f1c4e6e046a8599bd1ab4 https://www.encodeproject.org/files/ENCFF088RCG/@@download/ENCFF088RCG.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF646BLW bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF383BUZ, ENCFF644EWQ 7132430 ENCODE Processing Pipeline 1035b295dd36e70f0a5f55ce78f8ef10 https://www.encodeproject.org/files/ENCFF646BLW/@@download/ENCFF646BLW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF150YSX bigBed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF088RCG 12829808 ENCODE Processing Pipeline e4f97d7485dfd6d396b6c2f50df6da05 https://www.encodeproject.org/files/ENCFF150YSX/@@download/ENCFF150YSX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF488LFS bigBed narrowPeak conservative idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF392RQB 930764 ENCODE Processing Pipeline 069f7397cf5b8b46055a53be8fee4c95 https://www.encodeproject.org/files/ENCFF488LFS/@@download/ENCFF488LFS.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF898KZT bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF047FIB, ENCFF939ZVD 7139185 ENCODE Processing Pipeline 3fefe4fd67b6f20550c5888df7fbb4c9 https://www.encodeproject.org/files/ENCFF898KZT/@@download/ENCFF898KZT.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF217ATR bigBed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF451NAF 12640958 ENCODE Processing Pipeline 696eeb876a82909b624bde451ce70d4b https://www.encodeproject.org/files/ENCFF217ATR/@@download/ENCFF217ATR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF104AGB bigBed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF646BLW 12608276 ENCODE Processing Pipeline 38568f1892008ec96acae7bb524168ce https://www.encodeproject.org/files/ENCFF104AGB/@@download/ENCFF104AGB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF392RQB bed narrowPeak conservative idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF001TDO, ENCFF088RCG, ENCFF451NAF, ENCFF646BLW 507386 ENCODE Processing Pipeline c0e4ee32203f74180edd0aff97457866 https://www.encodeproject.org/files/ENCFF392RQB/@@download/ENCFF392RQB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF391EBJ bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF939ZVD 6954915 ENCODE Processing Pipeline 9a0c4a45600d1465b471449774251222 https://www.encodeproject.org/files/ENCFF391EBJ/@@download/ENCFF391EBJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF290BDN bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF047FIB 6601254 ENCODE Processing Pipeline 6ff8e6a9ffe65207ca4b6624a782db47 https://www.encodeproject.org/files/ENCFF290BDN/@@download/ENCFF290BDN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF998NID bed narrowPeak optimal idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF001TDO, ENCFF088RCG, ENCFF451NAF, ENCFF646BLW 570716 ENCODE Processing Pipeline 3c658d257fe24f1d0d25198f728c66ca https://www.encodeproject.org/files/ENCFF998NID/@@download/ENCFF998NID.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF226FBI bigBed narrowPeak optimal idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF998NID 1020716 ENCODE Processing Pipeline bb50c54ffc1a9daed1b51613562cf1c7 https://www.encodeproject.org/files/ENCFF226FBI/@@download/ENCFF226FBI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF857HGE bigBed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF391EBJ 12679450 ENCODE Processing Pipeline bc1eb2b9ab723812695eb5a1f1db1ede https://www.encodeproject.org/files/ENCFF857HGE/@@download/ENCFF857HGE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF268MIR bigBed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF898KZT 12616748 ENCODE Processing Pipeline ebfbdedf81cbb341ba0db11df082f5c9 https://www.encodeproject.org/files/ENCFF268MIR/@@download/ENCFF268MIR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF221DHS bed narrowPeak conservative idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF290BDN, ENCFF391EBJ, ENCFF419RSJ, ENCFF898KZT 512146 ENCODE Processing Pipeline f62a8c7cd7c811e2b6418e385b6b561e https://www.encodeproject.org/files/ENCFF221DHS/@@download/ENCFF221DHS.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF267AWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF221DHS 938169 ENCODE Processing Pipeline ca82fc7385c1caf6cf3b3a690946e9ce https://www.encodeproject.org/files/ENCFF267AWQ/@@download/ENCFF267AWQ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF554LPO bed narrowPeak optimal idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF290BDN, ENCFF391EBJ, ENCFF419RSJ, ENCFF898KZT 566202 ENCODE Processing Pipeline 71c7ce7ede39d95da1eddd91308826ed https://www.encodeproject.org/files/ENCFF554LPO/@@download/ENCFF554LPO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF233FGJ bigBed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF290BDN 12849909 ENCODE Processing Pipeline 82205ccb23f613da0823a3b8b8580d7a https://www.encodeproject.org/files/ENCFF233FGJ/@@download/ENCFF233FGJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF681QWA bigBed narrowPeak optimal idr thresholded peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF554LPO 1017043 ENCODE Processing Pipeline 118997360a02e360f6598e2c9c30d6e9 https://www.encodeproject.org/files/ENCFF681QWA/@@download/ENCFF681QWA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF665CXV fastq reads ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 1 50 single-ended 1584223225 Richard Myers, HAIB ee34101b64221922c7123b4cbeb8d589 SRA:SRR5339580 https://www.encodeproject.org/files/ENCFF665CXV/@@download/ENCFF665CXV.fastq.gz Illumina HiSeq 2000 /files/ENCFF400XMH/ released low read depth, antibody characterized with exemption ENCFF946BAN fastq reads ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 1 50 single-ended 1255278551 Richard Myers, HAIB ddbdf8e5a1fa0578843fe8be2b0e7da2 https://www.encodeproject.org/files/ENCFF946BAN/@@download/ENCFF946BAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, antibody characterized with exemption ENCFF713QBG bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF665CXV, ENCFF807MUK 1222977489 ENCODE Processing Pipeline 1ed304cc9bb022d8da175d84b3c11410 https://www.encodeproject.org/files/ENCFF713QBG/@@download/ENCFF713QBG.bam hg19 released low read depth, antibody characterized with exemption ENCFF493UYW bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF807MUK, ENCFF946BAN 932941826 ENCODE Processing Pipeline 4f0f23e754489417db9b990291d358eb https://www.encodeproject.org/files/ENCFF493UYW/@@download/ENCFF493UYW.bam hg19 released low read depth, antibody characterized with exemption ENCFF758UNJ bam unfiltered alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF643CGH, ENCFF665CXV 1718635019 ENCODE Processing Pipeline c8df0d9856868c9051c089cc23b30924 https://www.encodeproject.org/files/ENCFF758UNJ/@@download/ENCFF758UNJ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF971UIQ bam unfiltered alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF643CGH, ENCFF946BAN 1342725116 ENCODE Processing Pipeline bf99720421bf0e777eff6a22bb2613db https://www.encodeproject.org/files/ENCFF971UIQ/@@download/ENCFF971UIQ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF382DBE bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF643CGH, ENCFF665CXV 1223177321 ENCODE Processing Pipeline cbf1ebb9f3d4fc6cea3e4fa3c4f67aff https://www.encodeproject.org/files/ENCFF382DBE/@@download/ENCFF382DBE.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF888AOR bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF643CGH, ENCFF946BAN 932564663 ENCODE Processing Pipeline c29b68ac34e0bd63f2ea4d09174c1f33 https://www.encodeproject.org/files/ENCFF888AOR/@@download/ENCFF888AOR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF701SKJ bigWig signal p-value ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF063BAN, ENCFF382DBE 833642095 ENCODE Processing Pipeline 4d3994ec37589ed32815e7b35d4d3f59 https://www.encodeproject.org/files/ENCFF701SKJ/@@download/ENCFF701SKJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF113NMU bigWig signal p-value ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF332SVJ, ENCFF888AOR 634541586 ENCODE Processing Pipeline d3ba39bf02686ff6194efd171a4f9369 https://www.encodeproject.org/files/ENCFF113NMU/@@download/ENCFF113NMU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF401SID bigWig fold change over control ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF063BAN, ENCFF382DBE 535867688 ENCODE Processing Pipeline c729b4a88ae986a963a08ace9513a53c https://www.encodeproject.org/files/ENCFF401SID/@@download/ENCFF401SID.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF692LXI bigWig signal p-value ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF063BAN, ENCFF332SVJ, ENCFF382DBE, ENCFF888AOR 1215164739 ENCODE Processing Pipeline 15cc0699b789e312ed9677311bc9ed52 https://www.encodeproject.org/files/ENCFF692LXI/@@download/ENCFF692LXI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF865QNO bigWig fold change over control ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF332SVJ, ENCFF888AOR 488537011 ENCODE Processing Pipeline 90d58287da5a133c0cce95debbf3cdcb https://www.encodeproject.org/files/ENCFF865QNO/@@download/ENCFF865QNO.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF058NFI bigWig fold change over control ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF063BAN, ENCFF332SVJ, ENCFF382DBE, ENCFF888AOR 1099201356 ENCODE Processing Pipeline 68fe864c22aaa4f0838f3a328fa0a4df https://www.encodeproject.org/files/ENCFF058NFI/@@download/ENCFF058NFI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF990SRA bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF332SVJ, ENCFF888AOR 6419371 ENCODE Processing Pipeline 0ee4136d06a2513eae8bbc68898ee1cd https://www.encodeproject.org/files/ENCFF990SRA/@@download/ENCFF990SRA.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF670HFC bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF063BAN, ENCFF332SVJ, ENCFF382DBE, ENCFF888AOR 7098085 ENCODE Processing Pipeline ec9952c78441f3ac198de9908e8b0d8c https://www.encodeproject.org/files/ENCFF670HFC/@@download/ENCFF670HFC.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF698PDD bigBed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF990SRA 13060481 ENCODE Processing Pipeline ed0cddf2b95bd8393dff9ebde12512a3 https://www.encodeproject.org/files/ENCFF698PDD/@@download/ENCFF698PDD.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF881HOX bigBed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF670HFC 13263987 ENCODE Processing Pipeline 5e024042e6b34c99d4b2815deaf65b93 https://www.encodeproject.org/files/ENCFF881HOX/@@download/ENCFF881HOX.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF046QEQ bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF063BAN, ENCFF382DBE 6126018 ENCODE Processing Pipeline 544d72f381ce8441b5d3b265945b2c96 https://www.encodeproject.org/files/ENCFF046QEQ/@@download/ENCFF046QEQ.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF743YOX bigBed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF046QEQ 13385105 ENCODE Processing Pipeline b3ad7602db03ada65ad0bf104c1e829c https://www.encodeproject.org/files/ENCFF743YOX/@@download/ENCFF743YOX.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF191MYC bed narrowPeak conservative idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF046QEQ, ENCFF419RSJ, ENCFF670HFC, ENCFF990SRA 176306 ENCODE Processing Pipeline 221dcf358f7454630cd40eb494850607 https://www.encodeproject.org/files/ENCFF191MYC/@@download/ENCFF191MYC.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF163FLA bed narrowPeak optimal idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF046QEQ, ENCFF419RSJ, ENCFF670HFC, ENCFF990SRA 275708 ENCODE Processing Pipeline c62dfebc3a00c7cd0535bd47ec04a154 https://www.encodeproject.org/files/ENCFF163FLA/@@download/ENCFF163FLA.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF586NQQ bigBed narrowPeak conservative idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF191MYC 421179 ENCODE Processing Pipeline 6d73d62dc1bfd8dbfd0ac241c3419abd https://www.encodeproject.org/files/ENCFF586NQQ/@@download/ENCFF586NQQ.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF432ZFR bigBed narrowPeak optimal idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF163FLA 584395 ENCODE Processing Pipeline 8ad3f9cfa73c3b40faabbc89ce6f34c5 https://www.encodeproject.org/files/ENCFF432ZFR/@@download/ENCFF432ZFR.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF284HTQ bam unfiltered alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF665CXV, ENCFF807MUK 1710856975 ENCODE Processing Pipeline 540e789e351be00cb6571797c24525bf https://www.encodeproject.org/files/ENCFF284HTQ/@@download/ENCFF284HTQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF997CVO bam unfiltered alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF807MUK, ENCFF946BAN 1339666498 ENCODE Processing Pipeline 73abeb30ab16f2c60734f48f79cf277c https://www.encodeproject.org/files/ENCFF997CVO/@@download/ENCFF997CVO.bam hg19 released low read depth, antibody characterized with exemption ENCFF476EGJ bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF665CXV, ENCFF807MUK 1222977518 ENCODE Processing Pipeline c808f5e505d29c48bc3e06918611ee38 https://www.encodeproject.org/files/ENCFF476EGJ/@@download/ENCFF476EGJ.bam hg19 released low read depth, antibody characterized with exemption ENCFF798GLN bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF807MUK, ENCFF946BAN 932941854 ENCODE Processing Pipeline e04c78fc03112d729e56b6067dd5c447 https://www.encodeproject.org/files/ENCFF798GLN/@@download/ENCFF798GLN.bam hg19 released low read depth, antibody characterized with exemption ENCFF814LTT bigBed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF135TJX 13062200 ENCODE Processing Pipeline 63fd2f363d7bec68ff5f39430572f07b https://www.encodeproject.org/files/ENCFF814LTT/@@download/ENCFF814LTT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF135ALT bigBed narrowPeak conservative idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF740VTJ 333869 ENCODE Processing Pipeline 50f4dd1a44e3fd10e64ac9e5c123d17c https://www.encodeproject.org/files/ENCFF135ALT/@@download/ENCFF135ALT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF484DKT bed narrowPeak optimal idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF001TDO, ENCFF135TJX, ENCFF491AYX, ENCFF908UOT 257946 ENCODE Processing Pipeline 4ef8751c301c235ed067836ca888b02b https://www.encodeproject.org/files/ENCFF484DKT/@@download/ENCFF484DKT.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF670CQZ bigBed narrowPeak optimal idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF484DKT 557243 ENCODE Processing Pipeline 1afc306179e4c73457c3cce37a5bf401 https://www.encodeproject.org/files/ENCFF670CQZ/@@download/ENCFF670CQZ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF016ERH bigWig signal p-value ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF061QOJ, ENCFF798GLN 784261797 ENCODE Processing Pipeline d811814ddc03314c6a6b7b30796ef5bd https://www.encodeproject.org/files/ENCFF016ERH/@@download/ENCFF016ERH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF135TJX bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF061QOJ, ENCFF798GLN 6448558 ENCODE Processing Pipeline fe994e22e5535e903c5d1b003e19c321 https://www.encodeproject.org/files/ENCFF135TJX/@@download/ENCFF135TJX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF908UOT bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF061QOJ, ENCFF227XXD, ENCFF476EGJ, ENCFF798GLN 7071954 ENCODE Processing Pipeline f23079c4c92c24d44c132d688663e3f5 https://www.encodeproject.org/files/ENCFF908UOT/@@download/ENCFF908UOT.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF843TPP bigWig signal p-value ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF227XXD, ENCFF476EGJ 796755153 ENCODE Processing Pipeline 393b2eab317cdf415ce40ec7c8c3df8e https://www.encodeproject.org/files/ENCFF843TPP/@@download/ENCFF843TPP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF985MBQ bigWig fold change over control ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF227XXD, ENCFF476EGJ 539444918 ENCODE Processing Pipeline 9ac181a6cdfcd0537310e4bd6e6e4b08 https://www.encodeproject.org/files/ENCFF985MBQ/@@download/ENCFF985MBQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF779XVG bigWig signal p-value ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF061QOJ, ENCFF227XXD, ENCFF476EGJ, ENCFF798GLN 1319242479 ENCODE Processing Pipeline 462f8ca41d0ab6598d72ce934e7738d2 https://www.encodeproject.org/files/ENCFF779XVG/@@download/ENCFF779XVG.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF824OMP bigWig fold change over control ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF061QOJ, ENCFF798GLN 446286079 ENCODE Processing Pipeline 68e6d2f2f20ac9b2a072385ed4c3a5d5 https://www.encodeproject.org/files/ENCFF824OMP/@@download/ENCFF824OMP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF762MAM bigWig fold change over control ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF061QOJ, ENCFF227XXD, ENCFF476EGJ, ENCFF798GLN 1085683293 ENCODE Processing Pipeline 575de9171f2dc30c44e5e472772263ef https://www.encodeproject.org/files/ENCFF762MAM/@@download/ENCFF762MAM.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF491AYX bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF227XXD, ENCFF476EGJ 6115452 ENCODE Processing Pipeline dda65365ecde455a4549c284db4677e3 https://www.encodeproject.org/files/ENCFF491AYX/@@download/ENCFF491AYX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF088DLY bigBed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF491AYX 13348674 ENCODE Processing Pipeline 764cbffa4b0bdb61befe3011177a48d2 https://www.encodeproject.org/files/ENCFF088DLY/@@download/ENCFF088DLY.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF125KZN bigBed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF908UOT 13206413 ENCODE Processing Pipeline 25c32a72f5d0e95a3d010a020d09988a https://www.encodeproject.org/files/ENCFF125KZN/@@download/ENCFF125KZN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF740VTJ bed narrowPeak conservative idr thresholded peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF001TDO, ENCFF135TJX, ENCFF491AYX, ENCFF908UOT 165903 ENCODE Processing Pipeline 55a46c61ae40dbfeefbf981ed442e630 https://www.encodeproject.org/files/ENCFF740VTJ/@@download/ENCFF740VTJ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF946FDX bam unfiltered alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF605BFZ, ENCFF807MUK, ENCFF824PVS 4998937354 ENCODE Processing Pipeline bf2ae16d91a2e7a80638718d1e9a8d1e https://www.encodeproject.org/files/ENCFF946FDX/@@download/ENCFF946FDX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF557GGR bam unfiltered alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF605BFZ, ENCFF643CGH, ENCFF824PVS 5003621036 ENCODE Processing Pipeline 9f9ef6ed4bd9d8bf93870c1b5d3a7ded https://www.encodeproject.org/files/ENCFF557GGR/@@download/ENCFF557GGR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF281DML bam unfiltered alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF377PHH, ENCFF510HXD, ENCFF643CGH 7376846042 ENCODE Processing Pipeline 47a847676224e387bf6fd7bf03ff118e https://www.encodeproject.org/files/ENCFF281DML/@@download/ENCFF281DML.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF592SCF bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF605BFZ, ENCFF807MUK, ENCFF824PVS 2988134672 ENCODE Processing Pipeline fefe3bf0477b729c6c09b81902c9d13c https://www.encodeproject.org/files/ENCFF592SCF/@@download/ENCFF592SCF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF407KJY bam unfiltered alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF377PHH, ENCFF510HXD, ENCFF807MUK 7371184801 ENCODE Processing Pipeline e4cab6ccb618dfaa26b5a37dfdb9caf9 https://www.encodeproject.org/files/ENCFF407KJY/@@download/ENCFF407KJY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF603TYQ bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF605BFZ, ENCFF643CGH, ENCFF824PVS 2990136770 ENCODE Processing Pipeline 0cc341ffe303c8c1326d91f98ef4aaaf https://www.encodeproject.org/files/ENCFF603TYQ/@@download/ENCFF603TYQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF574VVE bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF377PHH, ENCFF510HXD, ENCFF807MUK 4824173505 ENCODE Processing Pipeline ef014e0af42b5708ec9d8245a82724da https://www.encodeproject.org/files/ENCFF574VVE/@@download/ENCFF574VVE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF753YTV bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF377PHH, ENCFF510HXD, ENCFF643CGH 4828094526 ENCODE Processing Pipeline 28dd25c5513dd94a32b407a41e8b9e5a https://www.encodeproject.org/files/ENCFF753YTV/@@download/ENCFF753YTV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF619XZH bigWig signal p-value ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF592SCF, ENCFF834TUP 929381415 ENCODE Processing Pipeline ef752b9c1e80a2345b3825c328e5355d https://www.encodeproject.org/files/ENCFF619XZH/@@download/ENCFF619XZH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF203LVZ bigWig signal p-value ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF574VVE, ENCFF834TUP 1483115001 ENCODE Processing Pipeline d5a6dec3986460ae4882787a238b3468 https://www.encodeproject.org/files/ENCFF203LVZ/@@download/ENCFF203LVZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF664OEY bigWig signal p-value ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF574VVE, ENCFF592SCF, ENCFF834TUP 1905956047 ENCODE Processing Pipeline 06ffd47bdbf36b4b8162153628ee82c2 https://www.encodeproject.org/files/ENCFF664OEY/@@download/ENCFF664OEY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF317HYO bigWig fold change over control ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF592SCF, ENCFF834TUP 1066962101 ENCODE Processing Pipeline 4bc1765f9c980ca22f8f3750b528e179 https://www.encodeproject.org/files/ENCFF317HYO/@@download/ENCFF317HYO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF452MHB bigWig fold change over control ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF574VVE, ENCFF834TUP 1947048582 ENCODE Processing Pipeline 5addca65eff80aca5825e190cd7430db https://www.encodeproject.org/files/ENCFF452MHB/@@download/ENCFF452MHB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF875OWQ bigWig fold change over control ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF574VVE, ENCFF592SCF, ENCFF834TUP 2252468688 ENCODE Processing Pipeline 76f68f7fc7ef1634b6cb556ad13eae16 https://www.encodeproject.org/files/ENCFF875OWQ/@@download/ENCFF875OWQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF552VIT bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF592SCF, ENCFF834TUP 6153758 ENCODE Processing Pipeline e0c6f5872a6ab62f22c4015014fdef3c https://www.encodeproject.org/files/ENCFF552VIT/@@download/ENCFF552VIT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF789TXE bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF574VVE, ENCFF834TUP 6766713 ENCODE Processing Pipeline aae04d472a2b3903a8809739fb6c9195 https://www.encodeproject.org/files/ENCFF789TXE/@@download/ENCFF789TXE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF874KMM bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF574VVE, ENCFF592SCF, ENCFF834TUP 7065247 ENCODE Processing Pipeline f8814c2f996dbe02e85b0fc6bf635d35 https://www.encodeproject.org/files/ENCFF874KMM/@@download/ENCFF874KMM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF319KAM bigBed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF789TXE 11128469 ENCODE Processing Pipeline d7152eb34157df79939152e8f81a8d2b https://www.encodeproject.org/files/ENCFF319KAM/@@download/ENCFF319KAM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF741XCW bigBed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF874KMM 11008348 ENCODE Processing Pipeline d1b9a23a3dcc761872f743c943286912 https://www.encodeproject.org/files/ENCFF741XCW/@@download/ENCFF741XCW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF414CVQ bed narrowPeak conservative idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF552VIT, ENCFF789TXE, ENCFF874KMM 18343 ENCODE Processing Pipeline 0ec7547bab294e9a96444b03c365e312 https://www.encodeproject.org/files/ENCFF414CVQ/@@download/ENCFF414CVQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF006FDS bigBed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF552VIT 11181990 ENCODE Processing Pipeline e4bd7ba383706e44acbecacb92673934 https://www.encodeproject.org/files/ENCFF006FDS/@@download/ENCFF006FDS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF791DYM bigBed narrowPeak conservative idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF414CVQ 107568 ENCODE Processing Pipeline 297f1a9133df94ed35b766745e383d19 https://www.encodeproject.org/files/ENCFF791DYM/@@download/ENCFF791DYM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF820EVZ bed narrowPeak optimal idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF552VIT, ENCFF789TXE, ENCFF874KMM 34572 ENCODE Processing Pipeline b8fa23f2583309d50424112c5abc17ab https://www.encodeproject.org/files/ENCFF820EVZ/@@download/ENCFF820EVZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF696ZWU bigBed narrowPeak optimal idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF820EVZ 143814 ENCODE Processing Pipeline d08b9e1d2c1b4dfc00eafff3d7bdb03e https://www.encodeproject.org/files/ENCFF696ZWU/@@download/ENCFF696ZWU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF856QMZ bigWig signal p-value ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF603TYQ, ENCFF712WXB 910412388 ENCODE Processing Pipeline f4070e88af5199292276befc7c7d30a6 https://www.encodeproject.org/files/ENCFF856QMZ/@@download/ENCFF856QMZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF063XJK bigWig signal p-value ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF753YTV, ENCFF790TAN 1491848735 ENCODE Processing Pipeline 6ffcdd0ec22aa0bfd13a8316885b4f89 https://www.encodeproject.org/files/ENCFF063XJK/@@download/ENCFF063XJK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF313RIN bigWig signal p-value ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF603TYQ, ENCFF712WXB, ENCFF753YTV, ENCFF790TAN 1891768500 ENCODE Processing Pipeline ddf630f40e3170794486db9c064b9d5a https://www.encodeproject.org/files/ENCFF313RIN/@@download/ENCFF313RIN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF223MGE bigWig fold change over control ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF603TYQ, ENCFF712WXB 1045985533 ENCODE Processing Pipeline c0dc2b60532e5027f2b24419d4c745c1 https://www.encodeproject.org/files/ENCFF223MGE/@@download/ENCFF223MGE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF895LIT bigWig fold change over control ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF753YTV, ENCFF790TAN 1946065791 ENCODE Processing Pipeline b8ea8ec2428988e8fb8016efbb8a9add https://www.encodeproject.org/files/ENCFF895LIT/@@download/ENCFF895LIT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF786YHA bigWig fold change over control ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF603TYQ, ENCFF712WXB, ENCFF753YTV, ENCFF790TAN 2254129911 ENCODE Processing Pipeline cf2c83effd43d898883ebf6ba94155bf https://www.encodeproject.org/files/ENCFF786YHA/@@download/ENCFF786YHA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF347FDY bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF603TYQ, ENCFF712WXB 5987772 ENCODE Processing Pipeline a8f1df57fc633822ba6b1269c0595a40 https://www.encodeproject.org/files/ENCFF347FDY/@@download/ENCFF347FDY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF681WSX bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF753YTV, ENCFF790TAN 6651072 ENCODE Processing Pipeline 429a494f3e93afb63014f6aed0b504b4 https://www.encodeproject.org/files/ENCFF681WSX/@@download/ENCFF681WSX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF709XJG bed narrowPeak conservative idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF347FDY, ENCFF418KWK, ENCFF419RSJ, ENCFF681WSX 19048 ENCODE Processing Pipeline 1dd3fcd9157fe2d36fc44033f9912e03 https://www.encodeproject.org/files/ENCFF709XJG/@@download/ENCFF709XJG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF955OIH bigBed narrowPeak optimal idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF560CYG 144925 ENCODE Processing Pipeline 891d45285a4b7ce103f4395890a0c909 https://www.encodeproject.org/files/ENCFF955OIH/@@download/ENCFF955OIH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF320DZS bigBed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF347FDY 11175181 ENCODE Processing Pipeline 45f1c2cdac24b2fabcc1e1912822a1aa https://www.encodeproject.org/files/ENCFF320DZS/@@download/ENCFF320DZS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF550NJI bigBed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF681WSX 11141367 ENCODE Processing Pipeline 861907d1d021702cf661620d4db97499 https://www.encodeproject.org/files/ENCFF550NJI/@@download/ENCFF550NJI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF351NIP bigBed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF418KWK 11026907 ENCODE Processing Pipeline 31d949ec3ceb2e5533c9caf52cc94f3a https://www.encodeproject.org/files/ENCFF351NIP/@@download/ENCFF351NIP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF418KWK bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF603TYQ, ENCFF712WXB, ENCFF753YTV, ENCFF790TAN 7007162 ENCODE Processing Pipeline 81f0b714a9aaaf07e5420236f7eb7a20 https://www.encodeproject.org/files/ENCFF418KWK/@@download/ENCFF418KWK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF696ZOA bigBed narrowPeak conservative idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF709XJG 110933 ENCODE Processing Pipeline b9a986c50ded5d55205abf94fd16133a https://www.encodeproject.org/files/ENCFF696ZOA/@@download/ENCFF696ZOA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF560CYG bed narrowPeak optimal idr thresholded peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF347FDY, ENCFF418KWK, ENCFF419RSJ, ENCFF681WSX 33773 ENCODE Processing Pipeline 6ac479779ece67e788db86fc14ae5733 https://www.encodeproject.org/files/ENCFF560CYG/@@download/ENCFF560CYG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF377PHH fastq reads ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF510HXD 4113270729 Michael Snyder, Stanford 4597f1349710233461f614269c716a3c https://www.encodeproject.org/files/ENCFF377PHH/@@download/ENCFF377PHH.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF824PVS fastq reads ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF605BFZ 2514236277 Michael Snyder, Stanford 3204009bb7871c50d838d541153c01a2 https://www.encodeproject.org/files/ENCFF824PVS/@@download/ENCFF824PVS.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF605BFZ fastq reads ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF824PVS 2560911903 Michael Snyder, Stanford d71b2c378997d818afb721da84d234b4 https://www.encodeproject.org/files/ENCFF605BFZ/@@download/ENCFF605BFZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF510HXD fastq reads ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF377PHH 3834222265 Michael Snyder, Stanford 61647403d432158dfc342ed014936087 https://www.encodeproject.org/files/ENCFF510HXD/@@download/ENCFF510HXD.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF632EVH fastq reads ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 1 50 single-ended 1144149823 Richard Myers, HAIB 2fca44161d69ae1e9275d774444f4708 SRA:SRR5339044 https://www.encodeproject.org/files/ENCFF632EVH/@@download/ENCFF632EVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF778YOV fastq reads ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 1 50 single-ended 1227270161 Richard Myers, HAIB 7f573dad0ad72708d604001e5ceb271b SRA:SRR5339043 https://www.encodeproject.org/files/ENCFF778YOV/@@download/ENCFF778YOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF913JVQ/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF697MUV bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 50 ENCFF632EVH, ENCFF807MUK 944710007 ENCODE Processing Pipeline 5c982e98a27b3ad0d4780086a8bca65b https://www.encodeproject.org/files/ENCFF697MUV/@@download/ENCFF697MUV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF687NJZ bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 50 ENCFF778YOV, ENCFF807MUK 891430692 ENCODE Processing Pipeline 53b1ad257fe94fd185e7dc8f883ca17f https://www.encodeproject.org/files/ENCFF687NJZ/@@download/ENCFF687NJZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF310GOY bigWig signal p-value ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF444TNY, ENCFF687NJZ 648378808 ENCODE Processing Pipeline f81ae139cfbcf2ae5197de8b68de73e1 https://www.encodeproject.org/files/ENCFF310GOY/@@download/ENCFF310GOY.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF970CAM bigWig signal p-value ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF061QOJ, ENCFF697MUV 657631386 ENCODE Processing Pipeline 0bfe923a662a23fc608cf75b8a07ff50 https://www.encodeproject.org/files/ENCFF970CAM/@@download/ENCFF970CAM.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF313MJY bigWig fold change over control ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF444TNY, ENCFF687NJZ 436972936 ENCODE Processing Pipeline 9d8f11ea62616717d5ceb7cf25da6eda https://www.encodeproject.org/files/ENCFF313MJY/@@download/ENCFF313MJY.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF741SCF bigWig fold change over control ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF061QOJ, ENCFF697MUV 426336250 ENCODE Processing Pipeline e99bc7eb65779c7a46b1e405a4f53162 https://www.encodeproject.org/files/ENCFF741SCF/@@download/ENCFF741SCF.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF003TEQ bam unfiltered alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 50 ENCFF632EVH, ENCFF643CGH 1249239208 ENCODE Processing Pipeline d4fd6e5ed0da170ed9f2b7c53fdb7339 https://www.encodeproject.org/files/ENCFF003TEQ/@@download/ENCFF003TEQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF620QZO bam unfiltered alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 50 ENCFF643CGH, ENCFF778YOV 1304997768 ENCODE Processing Pipeline 7ce495bc91c244c8b1fa449a12d9dd8f https://www.encodeproject.org/files/ENCFF620QZO/@@download/ENCFF620QZO.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF330ZVF bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 50 ENCFF632EVH, ENCFF643CGH 944311289 ENCODE Processing Pipeline 82298dd43c4061f39801ced2c5b15aa6 https://www.encodeproject.org/files/ENCFF330ZVF/@@download/ENCFF330ZVF.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF066TDG bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 50 ENCFF643CGH, ENCFF778YOV 890708156 ENCODE Processing Pipeline ad986b20689248196fd426f0c9912b97 https://www.encodeproject.org/files/ENCFF066TDG/@@download/ENCFF066TDG.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF166TDZ bigWig signal p-value ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF066TDG, ENCFF162ZOO 611713934 ENCODE Processing Pipeline 9b9600155f139c72d626fad85d1de1cb https://www.encodeproject.org/files/ENCFF166TDZ/@@download/ENCFF166TDZ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF118JMD bigWig signal p-value ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF330ZVF, ENCFF332SVJ 726040323 ENCODE Processing Pipeline 9365018c19107472539ce7205cf941e0 https://www.encodeproject.org/files/ENCFF118JMD/@@download/ENCFF118JMD.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF675ZYU bigWig signal p-value ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF066TDG, ENCFF162ZOO, ENCFF330ZVF, ENCFF332SVJ 1239012654 ENCODE Processing Pipeline ce5193edebf5d324279b5264285019fe https://www.encodeproject.org/files/ENCFF675ZYU/@@download/ENCFF675ZYU.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF583AKO bigWig fold change over control ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF330ZVF, ENCFF332SVJ 455730252 ENCODE Processing Pipeline a54f3449e959612b84f8b45abe0c89ab https://www.encodeproject.org/files/ENCFF583AKO/@@download/ENCFF583AKO.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF677CNQ bigWig fold change over control ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF066TDG, ENCFF162ZOO 431245804 ENCODE Processing Pipeline 72af46ae5790ba55e8640907b1d20b80 https://www.encodeproject.org/files/ENCFF677CNQ/@@download/ENCFF677CNQ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF112GHP bigWig fold change over control ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF066TDG, ENCFF162ZOO, ENCFF330ZVF, ENCFF332SVJ 1075611514 ENCODE Processing Pipeline 2422ec5da6b74c46c6125a10b9d77ea5 https://www.encodeproject.org/files/ENCFF112GHP/@@download/ENCFF112GHP.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF318ICI bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF066TDG, ENCFF162ZOO 6594649 ENCODE Processing Pipeline c31f11d8abe3e70259e45c68f8f21361 https://www.encodeproject.org/files/ENCFF318ICI/@@download/ENCFF318ICI.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF665RFE bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF066TDG, ENCFF162ZOO, ENCFF330ZVF, ENCFF332SVJ 7084471 ENCODE Processing Pipeline a3878e2c9d342dd3cc2f8a67d233cf93 https://www.encodeproject.org/files/ENCFF665RFE/@@download/ENCFF665RFE.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF354MAW bigBed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF179HIK 10962525 ENCODE Processing Pipeline 8ca18e49a4d7da8036bb4bbe565be454 https://www.encodeproject.org/files/ENCFF354MAW/@@download/ENCFF354MAW.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF179HIK bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF330ZVF, ENCFF332SVJ 5008917 ENCODE Processing Pipeline cf4d1f9904f6c62a0df213b1061f951b https://www.encodeproject.org/files/ENCFF179HIK/@@download/ENCFF179HIK.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF570AOS bigBed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF318ICI 12752068 ENCODE Processing Pipeline e36f3e58c3ae6787bf4db2fb74e98c56 https://www.encodeproject.org/files/ENCFF570AOS/@@download/ENCFF570AOS.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF561ZCZ bed narrowPeak conservative idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF179HIK, ENCFF318ICI, ENCFF419RSJ, ENCFF665RFE 103633 ENCODE Processing Pipeline 132d8cec16663937ab3d080451cd2263 https://www.encodeproject.org/files/ENCFF561ZCZ/@@download/ENCFF561ZCZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF777YNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF955AOD 376735 ENCODE Processing Pipeline 1b96603803367a75f2d032c7a4e63602 https://www.encodeproject.org/files/ENCFF777YNZ/@@download/ENCFF777YNZ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF147TRJ bigBed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF665RFE 12998625 ENCODE Processing Pipeline 7cd0d3a8183c62d44b2509670b5a254c https://www.encodeproject.org/files/ENCFF147TRJ/@@download/ENCFF147TRJ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF738ZFZ bigBed narrowPeak conservative idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF561ZCZ 247269 ENCODE Processing Pipeline f4711b6b166ae2952021125cb64edd48 https://www.encodeproject.org/files/ENCFF738ZFZ/@@download/ENCFF738ZFZ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF955AOD bed narrowPeak optimal idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF179HIK, ENCFF318ICI, ENCFF419RSJ, ENCFF665RFE 149529 ENCODE Processing Pipeline bc4c11d9d78b94563fe383ad4e73cabf https://www.encodeproject.org/files/ENCFF955AOD/@@download/ENCFF955AOD.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF238MPM bam unfiltered alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 50 ENCFF632EVH, ENCFF807MUK 1246686704 ENCODE Processing Pipeline 526ba1e6ff7f204a5c61341d2319d46a https://www.encodeproject.org/files/ENCFF238MPM/@@download/ENCFF238MPM.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF215WEE bam unfiltered alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 50 ENCFF778YOV, ENCFF807MUK 1303179867 ENCODE Processing Pipeline 5cb8e72fd969441f4d7d23a52aba7ae1 https://www.encodeproject.org/files/ENCFF215WEE/@@download/ENCFF215WEE.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF653KSG bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF061QOJ, ENCFF697MUV 5013280 ENCODE Processing Pipeline 3b05dbf77ef7c94afb2756e092c442af https://www.encodeproject.org/files/ENCFF653KSG/@@download/ENCFF653KSG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF775QZE bigWig signal p-value ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF061QOJ, ENCFF444TNY, ENCFF687NJZ, ENCFF697MUV 1224118762 ENCODE Processing Pipeline e5dcac166c67e602b664e45261925353 https://www.encodeproject.org/files/ENCFF775QZE/@@download/ENCFF775QZE.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF609EAA bigWig fold change over control ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF061QOJ, ENCFF444TNY, ENCFF687NJZ, ENCFF697MUV 1076212579 ENCODE Processing Pipeline f18c53708b5125935ccedc3afc43ac07 https://www.encodeproject.org/files/ENCFF609EAA/@@download/ENCFF609EAA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF274QRN bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF444TNY, ENCFF687NJZ 6619368 ENCODE Processing Pipeline 9623122622e543751f25f98e9569871c https://www.encodeproject.org/files/ENCFF274QRN/@@download/ENCFF274QRN.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF321EBZ bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF061QOJ, ENCFF444TNY, ENCFF687NJZ, ENCFF697MUV 7082793 ENCODE Processing Pipeline 38d601c00b062ea1c82507bfe9a3f98c https://www.encodeproject.org/files/ENCFF321EBZ/@@download/ENCFF321EBZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF032IBR bigBed narrowPeak optimal idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF042RAK 303062 ENCODE Processing Pipeline e3214511453d23770fef16740f036035 https://www.encodeproject.org/files/ENCFF032IBR/@@download/ENCFF032IBR.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF490JLD bigBed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF274QRN 12737023 ENCODE Processing Pipeline 1243fa2a79f8b3739d1eeea91c53a65d https://www.encodeproject.org/files/ENCFF490JLD/@@download/ENCFF490JLD.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF261OKK bigBed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF653KSG 10958812 ENCODE Processing Pipeline 988f88a5427ba8c782a715c90950e1e3 https://www.encodeproject.org/files/ENCFF261OKK/@@download/ENCFF261OKK.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF057VLW bigBed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF321EBZ 12957225 ENCODE Processing Pipeline 9c8b03341dad62af3c3e0678e59fc5df https://www.encodeproject.org/files/ENCFF057VLW/@@download/ENCFF057VLW.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF402WGE bigBed narrowPeak conservative idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF053ADC 239826 ENCODE Processing Pipeline 640b3b3284681584dfac0556c2cbca37 https://www.encodeproject.org/files/ENCFF402WGE/@@download/ENCFF402WGE.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF042RAK bed narrowPeak optimal idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF001TDO, ENCFF274QRN, ENCFF321EBZ, ENCFF653KSG 143406 ENCODE Processing Pipeline 5999caca5c955d8fcf5642d2be510f69 https://www.encodeproject.org/files/ENCFF042RAK/@@download/ENCFF042RAK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF053ADC bed narrowPeak conservative idr thresholded peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF001TDO, ENCFF274QRN, ENCFF321EBZ, ENCFF653KSG 99607 ENCODE Processing Pipeline 9679702e2cbe451a0251b3e344a98c49 https://www.encodeproject.org/files/ENCFF053ADC/@@download/ENCFF053ADC.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF716BNN fastq reads ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF892KYV 1950682864 Richard Myers, HAIB 199d5c2caaa389de0136ce3cb2ef5d7f SRA:SRR6213886 https://www.encodeproject.org/files/ENCFF716BNN/@@download/ENCFF716BNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF766JFK/ released antibody characterized with exemption missing control alignments ENCFF892KYV fastq reads ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF716BNN 2036557538 Richard Myers, HAIB d1a4fe0548b3377bab419e3c5c2b5bc6 SRA:SRR6213886 https://www.encodeproject.org/files/ENCFF892KYV/@@download/ENCFF892KYV.fastq.gz Illumina HiSeq 2000 /files/ENCFF826BIL/ released antibody characterized with exemption missing control alignments ENCFF475UFK bam unfiltered alignments ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF716BNN, ENCFF807MUK, ENCFF892KYV 4499251081 ENCODE Processing Pipeline 149defe8fb6293e59e4451b943d63789 https://www.encodeproject.org/files/ENCFF475UFK/@@download/ENCFF475UFK.bam hg19 released antibody characterized with exemption missing control alignments ENCFF478WHQ bam unfiltered alignments ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF716BNN, ENCFF892KYV 4508282768 ENCODE Processing Pipeline b2370a3913bab266135d755c9887fe0d https://www.encodeproject.org/files/ENCFF478WHQ/@@download/ENCFF478WHQ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF122EVJ bam alignments ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF716BNN, ENCFF807MUK, ENCFF892KYV 3382490138 ENCODE Processing Pipeline 195facb12cad8d62d358c7dd38a1a954 https://www.encodeproject.org/files/ENCFF122EVJ/@@download/ENCFF122EVJ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF591PEY bam alignments ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF716BNN, ENCFF892KYV 3380982404 ENCODE Processing Pipeline e54f99b7f0181a8beb711fdce652d96d https://www.encodeproject.org/files/ENCFF591PEY/@@download/ENCFF591PEY.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF043JOO bigWig signal p-value ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF122EVJ 1441856888 ENCODE Processing Pipeline ae9178eee2d707ac0d67f9d353f16f00 https://www.encodeproject.org/files/ENCFF043JOO/@@download/ENCFF043JOO.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF034ZXB bigWig fold change over control ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF122EVJ 1082403217 ENCODE Processing Pipeline 278ce3d644c29d3808cc9a71429ce153 https://www.encodeproject.org/files/ENCFF034ZXB/@@download/ENCFF034ZXB.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF495YBQ bed narrowPeak peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF122EVJ 7049771 ENCODE Processing Pipeline 78e7fe8188e0d8b580593a3f90966bac https://www.encodeproject.org/files/ENCFF495YBQ/@@download/ENCFF495YBQ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF981JOH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF495YBQ 1307797 ENCODE Processing Pipeline c8aba6a7f303d12ac3c0138d74fd713f https://www.encodeproject.org/files/ENCFF981JOH/@@download/ENCFF981JOH.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF144YVH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF981JOH 2806480 ENCODE Processing Pipeline 142d3c1ee7fe3c62d35d44580cca5f5e https://www.encodeproject.org/files/ENCFF144YVH/@@download/ENCFF144YVH.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF754LRY bigBed narrowPeak peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF495YBQ 13055052 ENCODE Processing Pipeline 5139999b3d4b5f9784b35bdb4d900e25 https://www.encodeproject.org/files/ENCFF754LRY/@@download/ENCFF754LRY.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF469CEQ bigWig fold change over control ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF591PEY 1071199754 ENCODE Processing Pipeline f4fa76e018afcc418823ec88a41164ab https://www.encodeproject.org/files/ENCFF469CEQ/@@download/ENCFF469CEQ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF875AJZ bigWig signal p-value ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF591PEY 1182899803 ENCODE Processing Pipeline 3d08920568d0e702375deb5f4ab081a4 https://www.encodeproject.org/files/ENCFF875AJZ/@@download/ENCFF875AJZ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF049JNK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF835VBA 1326532 ENCODE Processing Pipeline 09ca0ca6ab7f0d67a6858b4a55a5ec54 https://www.encodeproject.org/files/ENCFF049JNK/@@download/ENCFF049JNK.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF038JBQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF049JNK 2834877 ENCODE Processing Pipeline 18dd033f9c2424ae27dff9addfd5af58 https://www.encodeproject.org/files/ENCFF038JBQ/@@download/ENCFF038JBQ.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF835VBA bed narrowPeak peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF591PEY 7096026 ENCODE Processing Pipeline 508134f853429ef3b9d59800ad8e420e https://www.encodeproject.org/files/ENCFF835VBA/@@download/ENCFF835VBA.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF186FFW bigBed narrowPeak peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF835VBA 13112600 ENCODE Processing Pipeline 5b7e656255a08090ab0534f7638308c8 https://www.encodeproject.org/files/ENCFF186FFW/@@download/ENCFF186FFW.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF482HKO fastq reads ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF783OVZ 1494991845 Richard Myers, HAIB 0a708f3c1598b4f3d0cb6160744cd808 SRA:SRR6213042 https://www.encodeproject.org/files/ENCFF482HKO/@@download/ENCFF482HKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF007TGS/ released antibody characterized with exemption missing control alignments ENCFF783OVZ fastq reads ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF482HKO 1530548579 Richard Myers, HAIB bca2d09ef91d88a7e9a06d36ce74d04d SRA:SRR6213042 https://www.encodeproject.org/files/ENCFF783OVZ/@@download/ENCFF783OVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF472CPZ/ released antibody characterized with exemption missing control alignments ENCFF013LJH bam unfiltered alignments ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF482HKO, ENCFF783OVZ, ENCFF807MUK 3576618345 ENCODE Processing Pipeline ba48c59deddcc0cf7923e70a4b3a1941 https://www.encodeproject.org/files/ENCFF013LJH/@@download/ENCFF013LJH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF544NWF bam unfiltered alignments ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF482HKO, ENCFF643CGH, ENCFF783OVZ 3591256088 ENCODE Processing Pipeline c195d65e3959be0502e689aea0e9bcc5 https://www.encodeproject.org/files/ENCFF544NWF/@@download/ENCFF544NWF.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF076YOL bam alignments ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF482HKO, ENCFF783OVZ, ENCFF807MUK 2594615847 ENCODE Processing Pipeline 13ef9823617cf20414d191359d0cc0ea https://www.encodeproject.org/files/ENCFF076YOL/@@download/ENCFF076YOL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF906VNO bam alignments ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF482HKO, ENCFF643CGH, ENCFF783OVZ 2598075351 ENCODE Processing Pipeline f044a3859bb2665bcd84275108773452 https://www.encodeproject.org/files/ENCFF906VNO/@@download/ENCFF906VNO.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF694TXJ bigWig signal p-value ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF906VNO 867444592 ENCODE Processing Pipeline 2d6fd2a9b00075a146b5c634e059bd34 https://www.encodeproject.org/files/ENCFF694TXJ/@@download/ENCFF694TXJ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF621LMW bigWig fold change over control ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF906VNO 832558561 ENCODE Processing Pipeline 5a07b4351459f335a1e110880344b269 https://www.encodeproject.org/files/ENCFF621LMW/@@download/ENCFF621LMW.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF548AAT bed narrowPeak peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF906VNO 4383270 ENCODE Processing Pipeline 5618d49bb6031894147c58992070bb05 https://www.encodeproject.org/files/ENCFF548AAT/@@download/ENCFF548AAT.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF676WYA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF548AAT 63883 ENCODE Processing Pipeline e51d7a081ca54b770402190d549f89a2 https://www.encodeproject.org/files/ENCFF676WYA/@@download/ENCFF676WYA.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF367FSN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF676WYA 167709 ENCODE Processing Pipeline dd69d5399dee2c3898e063b13778757b https://www.encodeproject.org/files/ENCFF367FSN/@@download/ENCFF367FSN.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF417FTY bigBed narrowPeak peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF548AAT 11329096 ENCODE Processing Pipeline 1535edad429b3e222851cd6800ea2213 https://www.encodeproject.org/files/ENCFF417FTY/@@download/ENCFF417FTY.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF648GGY bigWig signal p-value ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF076YOL 865928722 ENCODE Processing Pipeline c2ad6a9443f218324f7e43468cdb3e8a https://www.encodeproject.org/files/ENCFF648GGY/@@download/ENCFF648GGY.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF417NVH bigWig fold change over control ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF076YOL 832356745 ENCODE Processing Pipeline abe681f6a08a595eb894138b71317594 https://www.encodeproject.org/files/ENCFF417NVH/@@download/ENCFF417NVH.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF200AXJ bed narrowPeak peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF076YOL 4381897 ENCODE Processing Pipeline d32054bb514e263fe328dd9b6754b486 https://www.encodeproject.org/files/ENCFF200AXJ/@@download/ENCFF200AXJ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF131QGF bigBed narrowPeak peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF200AXJ 11313656 ENCODE Processing Pipeline b51ef0c56738637e6e06ba57c935ba0e https://www.encodeproject.org/files/ENCFF131QGF/@@download/ENCFF131QGF.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF294RNI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF200AXJ 65608 ENCODE Processing Pipeline 1c4ed51a73c4be9626e66e451c59e79a https://www.encodeproject.org/files/ENCFF294RNI/@@download/ENCFF294RNI.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF984LXP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF294RNI 168747 ENCODE Processing Pipeline 271e50cade86d29b37ae60cb84544780 https://www.encodeproject.org/files/ENCFF984LXP/@@download/ENCFF984LXP.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF213XIX fastq reads ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 1 ENCFF277HDI 2705985914 Michael Snyder, Stanford d96dbe9e284512c221b3182b40aeaa78 SRA:SRR6213223 https://www.encodeproject.org/files/ENCFF213XIX/@@download/ENCFF213XIX.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF916WNU fastq reads ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 1 ENCFF074ALH 2240199705 Michael Snyder, Stanford 26744f9f6bd9fa8c1bc9fc7f8417ecd6 SRA:SRR6213224 https://www.encodeproject.org/files/ENCFF916WNU/@@download/ENCFF916WNU.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF074ALH fastq reads ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 2 ENCFF916WNU 2561042585 Michael Snyder, Stanford eaa0fc4cd6c7ff8a317283ad0ee011a2 SRA:SRR6213224 https://www.encodeproject.org/files/ENCFF074ALH/@@download/ENCFF074ALH.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF277HDI fastq reads ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 2 ENCFF213XIX 3227124746 Michael Snyder, Stanford d9b2e1aa995e65a78a9f0881329c7531 SRA:SRR6213223 https://www.encodeproject.org/files/ENCFF277HDI/@@download/ENCFF277HDI.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF437RHD bam unfiltered alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF213XIX, ENCFF277HDI, ENCFF643CGH 5855353106 ENCODE Processing Pipeline 1eef95cb35642b6eba5175598ec96d9b https://www.encodeproject.org/files/ENCFF437RHD/@@download/ENCFF437RHD.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF577XGB bam unfiltered alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF074ALH, ENCFF807MUK, ENCFF916WNU 4818524679 ENCODE Processing Pipeline 719b8ce74c14695d05475fbeb35b7acd https://www.encodeproject.org/files/ENCFF577XGB/@@download/ENCFF577XGB.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF075HZJ bam unfiltered alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF074ALH, ENCFF643CGH, ENCFF916WNU 4826014534 ENCODE Processing Pipeline b341fd63c8eeac15350dd23af0e71841 https://www.encodeproject.org/files/ENCFF075HZJ/@@download/ENCFF075HZJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF482MHZ bam unfiltered alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF213XIX, ENCFF277HDI, ENCFF807MUK 5845324147 ENCODE Processing Pipeline 9379159190ae10d8d228e1c0eb36d392 https://www.encodeproject.org/files/ENCFF482MHZ/@@download/ENCFF482MHZ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF695AWN bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF074ALH, ENCFF807MUK, ENCFF916WNU 3896476102 ENCODE Processing Pipeline 0222703e999f0e711d42db355fd56978 https://www.encodeproject.org/files/ENCFF695AWN/@@download/ENCFF695AWN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF045PCB bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF213XIX, ENCFF277HDI, ENCFF643CGH 4637498538 ENCODE Processing Pipeline e4bf1e8b677ad2ea091c485dac1dcdd0 https://www.encodeproject.org/files/ENCFF045PCB/@@download/ENCFF045PCB.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF562VGW bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF074ALH, ENCFF643CGH, ENCFF916WNU 3898962936 ENCODE Processing Pipeline e4c59ae4841a0a1309aade4f16b52f6c https://www.encodeproject.org/files/ENCFF562VGW/@@download/ENCFF562VGW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF908CYV bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF213XIX, ENCFF277HDI, ENCFF807MUK 4632685851 ENCODE Processing Pipeline f98404dab4fdebbb2979e34a17b07838 https://www.encodeproject.org/files/ENCFF908CYV/@@download/ENCFF908CYV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF982STR bigWig signal p-value ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF695AWN 1391316615 ENCODE Processing Pipeline a6b13b058fc9a7f6022a8a97ab9c1dd5 https://www.encodeproject.org/files/ENCFF982STR/@@download/ENCFF982STR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF261NUS bigWig signal p-value ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF045PCB, ENCFF810LLR 1403364104 ENCODE Processing Pipeline 860c7a403b7b35523c39cb86437e9f63 https://www.encodeproject.org/files/ENCFF261NUS/@@download/ENCFF261NUS.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF824PEF bigWig signal p-value ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF908CYV 1549019484 ENCODE Processing Pipeline 321402f1f88c80889f304dfd7109fb3a https://www.encodeproject.org/files/ENCFF824PEF/@@download/ENCFF824PEF.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF670TPU bigWig signal p-value ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF182WHU, ENCFF695AWN, ENCFF908CYV 1929600174 ENCODE Processing Pipeline 3d68693509558c2e2246045c117b11f2 https://www.encodeproject.org/files/ENCFF670TPU/@@download/ENCFF670TPU.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF849TNC bigWig fold change over control ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF908CYV 1630978743 ENCODE Processing Pipeline 6f40565ed0806c7b5c302a4585868a2b https://www.encodeproject.org/files/ENCFF849TNC/@@download/ENCFF849TNC.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF450MNK bigWig signal p-value ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF045PCB, ENCFF562VGW, ENCFF810LLR 1960947348 ENCODE Processing Pipeline 23967bc91a873dd1b1e973a3c1813264 https://www.encodeproject.org/files/ENCFF450MNK/@@download/ENCFF450MNK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF878FSJ bigWig signal p-value ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF562VGW, ENCFF810LLR 1320031692 ENCODE Processing Pipeline ee3df3b60b16483b2c0fc13ee7055bb1 https://www.encodeproject.org/files/ENCFF878FSJ/@@download/ENCFF878FSJ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF290IPS bigWig fold change over control ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF045PCB, ENCFF810LLR 1633922876 ENCODE Processing Pipeline e65799452e31f0a2a1ee6a1365b3ef95 https://www.encodeproject.org/files/ENCFF290IPS/@@download/ENCFF290IPS.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF529JCF bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF045PCB, ENCFF562VGW, ENCFF810LLR 7248968 ENCODE Processing Pipeline 5ecf2a46aa92f27f8509c08b180695d7 https://www.encodeproject.org/files/ENCFF529JCF/@@download/ENCFF529JCF.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF384HUA bigBed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF656TEP 11110569 ENCODE Processing Pipeline 035a53d454ee5e1ba412556c9f3a937c https://www.encodeproject.org/files/ENCFF384HUA/@@download/ENCFF384HUA.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF345KAS bigWig fold change over control ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF695AWN 1499051891 ENCODE Processing Pipeline 2a314684316e8eb7ff2052e1c34d2b56 https://www.encodeproject.org/files/ENCFF345KAS/@@download/ENCFF345KAS.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF993QVX bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF695AWN 6367521 ENCODE Processing Pipeline e1c6976c5a318c80e66b36ad9305aefd https://www.encodeproject.org/files/ENCFF993QVX/@@download/ENCFF993QVX.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF448TGL bigWig fold change over control ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF562VGW, ENCFF810LLR 1472722350 ENCODE Processing Pipeline b025bb4f8e7defc9a89beb6de4c140b2 https://www.encodeproject.org/files/ENCFF448TGL/@@download/ENCFF448TGL.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF983LUS bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF562VGW, ENCFF810LLR 6368289 ENCODE Processing Pipeline f09af503f3f31debce3f54c5960942ee https://www.encodeproject.org/files/ENCFF983LUS/@@download/ENCFF983LUS.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF751BBW bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF045PCB, ENCFF810LLR 6577340 ENCODE Processing Pipeline fcf98e868d95ed1f93e13f9a7ac3f5c3 https://www.encodeproject.org/files/ENCFF751BBW/@@download/ENCFF751BBW.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF662YYT bigBed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF993QVX 11146715 ENCODE Processing Pipeline d14b7d66b61e96f292187e5be327b536 https://www.encodeproject.org/files/ENCFF662YYT/@@download/ENCFF662YYT.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF529AND bed narrowPeak conservative idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF532QFS, ENCFF656TEP, ENCFF993QVX 19230 ENCODE Processing Pipeline 0a67f89f8f624f0948c89f083a333f2a https://www.encodeproject.org/files/ENCFF529AND/@@download/ENCFF529AND.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF908CSW bigBed narrowPeak conservative idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF529AND 85528 ENCODE Processing Pipeline 1b36f7f5ec41791d9ab946bb9376a888 https://www.encodeproject.org/files/ENCFF908CSW/@@download/ENCFF908CSW.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF914JKB bigBed narrowPeak conservative idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF204LJN 87443 ENCODE Processing Pipeline 8cdf8c853b4a77a20aabd784dec94c9a https://www.encodeproject.org/files/ENCFF914JKB/@@download/ENCFF914JKB.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF883DVK bigWig fold change over control ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF182WHU, ENCFF695AWN, ENCFF908CYV 2136037510 ENCODE Processing Pipeline 3d598727df543d2cab9041512df622c8 https://www.encodeproject.org/files/ENCFF883DVK/@@download/ENCFF883DVK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF201BNN bigBed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF983LUS 11160980 ENCODE Processing Pipeline b8281e3f2d007a1775b172d1a9955475 https://www.encodeproject.org/files/ENCFF201BNN/@@download/ENCFF201BNN.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF409UVU bigBed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF532QFS 11284619 ENCODE Processing Pipeline 36783f238ad6d601cfbe3d0f3018e359 https://www.encodeproject.org/files/ENCFF409UVU/@@download/ENCFF409UVU.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF537WOR bigWig fold change over control ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF045PCB, ENCFF562VGW, ENCFF810LLR 2171673574 ENCODE Processing Pipeline 359bf7ec143cfdff843ac49070401176 https://www.encodeproject.org/files/ENCFF537WOR/@@download/ENCFF537WOR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF656TEP bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF908CYV 6572135 ENCODE Processing Pipeline 6afe1ad0634259d1714ec5530ddbfb9a https://www.encodeproject.org/files/ENCFF656TEP/@@download/ENCFF656TEP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF532QFS bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF182WHU, ENCFF695AWN, ENCFF908CYV 7246405 ENCODE Processing Pipeline da47035e411a7eef145523e0003b81dd https://www.encodeproject.org/files/ENCFF532QFS/@@download/ENCFF532QFS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF204LJN bed narrowPeak conservative idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF529JCF, ENCFF751BBW, ENCFF983LUS 19552 ENCODE Processing Pipeline 79f06e898e56f0b3d9ac178c68e21a73 https://www.encodeproject.org/files/ENCFF204LJN/@@download/ENCFF204LJN.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF329DZD bigBed narrowPeak optimal idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF888RHD 103866 ENCODE Processing Pipeline 21309d17e3a1a215b6f4be7def7b14a7 https://www.encodeproject.org/files/ENCFF329DZD/@@download/ENCFF329DZD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF875KHO bigBed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF751BBW 11130183 ENCODE Processing Pipeline 50e1b2a6578c8c832ad7c0da3ba94a6d https://www.encodeproject.org/files/ENCFF875KHO/@@download/ENCFF875KHO.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF673DQP bigBed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF529JCF 11304400 ENCODE Processing Pipeline 83c566a33dfc74e86bb2b5af1b81a72f https://www.encodeproject.org/files/ENCFF673DQP/@@download/ENCFF673DQP.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF888RHD bed narrowPeak optimal idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF532QFS, ENCFF656TEP, ENCFF993QVX 31092 ENCODE Processing Pipeline 5224c65c84d2d40df9c20fc63eef1c8d https://www.encodeproject.org/files/ENCFF888RHD/@@download/ENCFF888RHD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF507QUV bed narrowPeak optimal idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF529JCF, ENCFF751BBW, ENCFF983LUS 31276 ENCODE Processing Pipeline dd0c631a312b626d678e5360214f0acb https://www.encodeproject.org/files/ENCFF507QUV/@@download/ENCFF507QUV.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF302HHQ bigBed narrowPeak optimal idr thresholded peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF507QUV 106173 ENCODE Processing Pipeline 39be9e438f35fdc553c6597f3259a2fe https://www.encodeproject.org/files/ENCFF302HHQ/@@download/ENCFF302HHQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF133HXA fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF791JGC 2660160611 Michael Snyder, Stanford 437755a0857e24b69721016c1e109224 SRA:SRR6212610 https://www.encodeproject.org/files/ENCFF133HXA/@@download/ENCFF133HXA.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF791JGC fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF133HXA 3101535133 Michael Snyder, Stanford 36fbccffc46d7c8d5e269e6e99699b2a SRA:SRR6212610 https://www.encodeproject.org/files/ENCFF791JGC/@@download/ENCFF791JGC.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF899BUS fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF659EDD 3007520628 Michael Snyder, Stanford f9dc74f947c66eb72800ec5428375f5b SRA:SRR6212609 https://www.encodeproject.org/files/ENCFF899BUS/@@download/ENCFF899BUS.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF659EDD fastq reads ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF899BUS 2564853133 Michael Snyder, Stanford 18c1072811b5d0fefa68f88f2a61ce38 SRA:SRR6212609 https://www.encodeproject.org/files/ENCFF659EDD/@@download/ENCFF659EDD.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF502XOF bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF791JGC, ENCFF807MUK 4057304317 ENCODE Processing Pipeline 2cc4ad6afeef1c1d75631de4dcc00546 https://www.encodeproject.org/files/ENCFF502XOF/@@download/ENCFF502XOF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF842CRE bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF643CGH, ENCFF791JGC 5398587674 ENCODE Processing Pipeline 2553e4f50a6f2d78e3131f09f5b43ee7 https://www.encodeproject.org/files/ENCFF842CRE/@@download/ENCFF842CRE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF699QHD bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF791JGC, ENCFF807MUK 5392694667 ENCODE Processing Pipeline fb97e8effce29f8c0ff6b7c091b1ec4a https://www.encodeproject.org/files/ENCFF699QHD/@@download/ENCFF699QHD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF241LQC bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF659EDD, ENCFF807MUK, ENCFF899BUS 5230998395 ENCODE Processing Pipeline 935c5e747af2f0ad2c9b269c1e0df11e https://www.encodeproject.org/files/ENCFF241LQC/@@download/ENCFF241LQC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF431JBK bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF659EDD, ENCFF807MUK, ENCFF899BUS 4121832886 ENCODE Processing Pipeline 74444369aa7eed78689f28a7df8281be https://www.encodeproject.org/files/ENCFF431JBK/@@download/ENCFF431JBK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF826HNS bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF643CGH, ENCFF791JGC 4061840332 ENCODE Processing Pipeline 67056b8ad7e2e48ec688a982755b4281 https://www.encodeproject.org/files/ENCFF826HNS/@@download/ENCFF826HNS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF678GYV bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF659EDD, ENCFF899BUS 4126666270 ENCODE Processing Pipeline 56cf246748bcaaacf66bf6d254410f7e https://www.encodeproject.org/files/ENCFF678GYV/@@download/ENCFF678GYV.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF473YEO bam unfiltered alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF659EDD, ENCFF899BUS 5236965079 ENCODE Processing Pipeline 743b1ba87978cb33f77e8373cfc2f406 https://www.encodeproject.org/files/ENCFF473YEO/@@download/ENCFF473YEO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF667PHC bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF882PND 11590204 ENCODE Processing Pipeline c294d8f70ddde5acaebc24e251cffc68 https://www.encodeproject.org/files/ENCFF667PHC/@@download/ENCFF667PHC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF821QLI bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF593RSQ 13611024 ENCODE Processing Pipeline dbf0180f8a222b062758437e7f943e08 https://www.encodeproject.org/files/ENCFF821QLI/@@download/ENCFF821QLI.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF761CTK bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 1091843319 ENCODE Processing Pipeline bfb00757987d3b1ab451d39eef1e8b11 https://www.encodeproject.org/files/ENCFF761CTK/@@download/ENCFF761CTK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF264MCX bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 1089021706 ENCODE Processing Pipeline 3e534ea58e61d88ddf134f36481e7c62 https://www.encodeproject.org/files/ENCFF264MCX/@@download/ENCFF264MCX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF887VKI bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF431JBK, ENCFF502XOF, ENCFF592WAL, ENCFF901CND 1997134249 ENCODE Processing Pipeline 52ff8b0a23ff89441efa119a8569c90e https://www.encodeproject.org/files/ENCFF887VKI/@@download/ENCFF887VKI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF705NSQ bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 1306577645 ENCODE Processing Pipeline 868cb291765bf99e45586aee4be9b217 https://www.encodeproject.org/files/ENCFF705NSQ/@@download/ENCFF705NSQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF133LHQ bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF431JBK, ENCFF502XOF, ENCFF592WAL, ENCFF901CND 2344054144 ENCODE Processing Pipeline b0d0165fce354f7c229478e5c1ec6085 https://www.encodeproject.org/files/ENCFF133LHQ/@@download/ENCFF133LHQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF882PND bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 6275090 ENCODE Processing Pipeline c675cdb91db82617fa4ea75af504c153 https://www.encodeproject.org/files/ENCFF882PND/@@download/ENCFF882PND.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF110BUK bigBed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF657GJK 444381 ENCODE Processing Pipeline 51a1c9642bf885a6989420d3a0d8cfbd https://www.encodeproject.org/files/ENCFF110BUK/@@download/ENCFF110BUK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF620IIG bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF666ATR, ENCFF678GYV 6394307 ENCODE Processing Pipeline df3e4eae481b595ca889f7efc6686098 https://www.encodeproject.org/files/ENCFF620IIG/@@download/ENCFF620IIG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF355MUX bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF826HNS 6264272 ENCODE Processing Pipeline 55ad0951fe7b0394004c28375132150f https://www.encodeproject.org/files/ENCFF355MUX/@@download/ENCFF355MUX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF989JWG bed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF355MUX, ENCFF364CMF, ENCFF419RSJ, ENCFF620IIG 211975 ENCODE Processing Pipeline 1f43bb0e865a30a0525d8ac2ee91ddbc https://www.encodeproject.org/files/ENCFF989JWG/@@download/ENCFF989JWG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF597HMI bigBed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF313HBL 620753 ENCODE Processing Pipeline 52d5587abca7d2e5b82feb048b902c76 https://www.encodeproject.org/files/ENCFF597HMI/@@download/ENCFF597HMI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF682TBO bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 1383608805 ENCODE Processing Pipeline 8210c95b93136a7f1a91a33c680b9cf8 https://www.encodeproject.org/files/ENCFF682TBO/@@download/ENCFF682TBO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF593RSQ bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF431JBK, ENCFF502XOF, ENCFF592WAL, ENCFF901CND 7234019 ENCODE Processing Pipeline d9969cc61f20cc1afa17b8c75c38beb4 https://www.encodeproject.org/files/ENCFF593RSQ/@@download/ENCFF593RSQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF678VFS bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF956UUX 11490178 ENCODE Processing Pipeline a72902e4fc543a22a46b88954012c6d8 https://www.encodeproject.org/files/ENCFF678VFS/@@download/ENCFF678VFS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF657GJK bed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF593RSQ, ENCFF882PND, ENCFF956UUX 211460 ENCODE Processing Pipeline f636463f5b1e5b712a6060fdc5ea3b36 https://www.encodeproject.org/files/ENCFF657GJK/@@download/ENCFF657GJK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF129VYJ bigBed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF103OOV 619774 ENCODE Processing Pipeline 40464624f308975bfbbb09e0a4556e07 https://www.encodeproject.org/files/ENCFF129VYJ/@@download/ENCFF129VYJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF122EGN bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF826HNS 1368268377 ENCODE Processing Pipeline 5087f0d3f44357ddab1ab73768f27d84 https://www.encodeproject.org/files/ENCFF122EGN/@@download/ENCFF122EGN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF364CMF bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF322NTO, ENCFF666ATR, ENCFF678GYV, ENCFF826HNS 7244568 ENCODE Processing Pipeline 55b79d9a5eeca37cb681693fb56a29f9 https://www.encodeproject.org/files/ENCFF364CMF/@@download/ENCFF364CMF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF363FPA bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF355MUX 11631162 ENCODE Processing Pipeline 05c59dad8d097e7694da51df28a30c9a https://www.encodeproject.org/files/ENCFF363FPA/@@download/ENCFF363FPA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF749QEO bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF666ATR, ENCFF678GYV 1099976975 ENCODE Processing Pipeline ea68108a1ae4827aa1c4decca75ab4d2 https://www.encodeproject.org/files/ENCFF749QEO/@@download/ENCFF749QEO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF527FVZ bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF322NTO, ENCFF666ATR, ENCFF678GYV, ENCFF826HNS 2065201840 ENCODE Processing Pipeline 49216c12eacb83e69720ac83cbc4927c https://www.encodeproject.org/files/ENCFF527FVZ/@@download/ENCFF527FVZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF956UUX bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 6387050 ENCODE Processing Pipeline f841c981f589d266ef57754545a8a6f2 https://www.encodeproject.org/files/ENCFF956UUX/@@download/ENCFF956UUX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF479XSH bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF666ATR, ENCFF678GYV 1382827054 ENCODE Processing Pipeline 85dbd99d91b3c2685896f4b884522410 https://www.encodeproject.org/files/ENCFF479XSH/@@download/ENCFF479XSH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF103OOV bed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF593RSQ, ENCFF882PND, ENCFF956UUX 335127 ENCODE Processing Pipeline dc50267f97e94c42ba040408571a95a8 https://www.encodeproject.org/files/ENCFF103OOV/@@download/ENCFF103OOV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF629RRF bigWig fold change over control ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF322NTO, ENCFF666ATR, ENCFF678GYV, ENCFF826HNS 2345786106 ENCODE Processing Pipeline c8d8f8b7baf3eb5e0998a045d36598da https://www.encodeproject.org/files/ENCFF629RRF/@@download/ENCFF629RRF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF058UMI bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF364CMF 13631841 ENCODE Processing Pipeline 3e56a14957e4ed87c3df0d9308695957 https://www.encodeproject.org/files/ENCFF058UMI/@@download/ENCFF058UMI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF364EAT bigWig signal p-value ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF826HNS 1106494563 ENCODE Processing Pipeline c52be9577ddfaedeaf5b59a46a97c52b https://www.encodeproject.org/files/ENCFF364EAT/@@download/ENCFF364EAT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF085HAZ bigBed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF620IIG 11507027 ENCODE Processing Pipeline c6c562ecd9ed551c055037d96e45a239 https://www.encodeproject.org/files/ENCFF085HAZ/@@download/ENCFF085HAZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF623VVI bigBed narrowPeak conservative idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF989JWG 447237 ENCODE Processing Pipeline 0c9ef410b8518fa4e261e55ec6b3361d https://www.encodeproject.org/files/ENCFF623VVI/@@download/ENCFF623VVI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF313HBL bed narrowPeak optimal idr thresholded peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF355MUX, ENCFF364CMF, ENCFF419RSJ, ENCFF620IIG 334479 ENCODE Processing Pipeline cfcba39453fca558911b6f1d9f449785 https://www.encodeproject.org/files/ENCFF313HBL/@@download/ENCFF313HBL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF085MHP fastq reads ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1639588227 Richard Myers, HAIB 1fa157860b51bd976db5dbc0923baadd SRA:SRR5338954 https://www.encodeproject.org/files/ENCFF085MHP/@@download/ENCFF085MHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851FHG fastq reads ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1785314512 Richard Myers, HAIB bdd89631cdf1daf415161765046434a9 SRA:SRR5338955 https://www.encodeproject.org/files/ENCFF851FHG/@@download/ENCFF851FHG.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF559OAK bam unfiltered alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF851FHG 2092659251 ENCODE Processing Pipeline c6876448b90dffb3307b46eed644b73b https://www.encodeproject.org/files/ENCFF559OAK/@@download/ENCFF559OAK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF558CTF bam unfiltered alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF085MHP, ENCFF643CGH 1923825783 ENCODE Processing Pipeline 13e708fcad289fbb3c6ad89ca868babe https://www.encodeproject.org/files/ENCFF558CTF/@@download/ENCFF558CTF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF691WVL bam unfiltered alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF085MHP, ENCFF807MUK 1920184799 ENCODE Processing Pipeline e11e35e6eab37e647505634819d7ba55 https://www.encodeproject.org/files/ENCFF691WVL/@@download/ENCFF691WVL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF819VRY bam unfiltered alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF851FHG 2088311092 ENCODE Processing Pipeline 9ad683e762b516e40917947b105a7f08 https://www.encodeproject.org/files/ENCFF819VRY/@@download/ENCFF819VRY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF819ZGP bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF085MHP, ENCFF643CGH 1433748294 ENCODE Processing Pipeline d800ff56f1adf6434617b103582629a9 https://www.encodeproject.org/files/ENCFF819ZGP/@@download/ENCFF819ZGP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF998NVU bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF085MHP, ENCFF807MUK 1433233502 ENCODE Processing Pipeline d7eb40bff0e41083a0dc7e4bedb78918 https://www.encodeproject.org/files/ENCFF998NVU/@@download/ENCFF998NVU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF900SVA bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF851FHG 1575377128 ENCODE Processing Pipeline 121da5ebf96ca1e51400f2431edb6663 https://www.encodeproject.org/files/ENCFF900SVA/@@download/ENCFF900SVA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF784VQV bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF851FHG 1574628033 ENCODE Processing Pipeline 7b2bddf087ff5f8a296a99d60a1d76ff https://www.encodeproject.org/files/ENCFF784VQV/@@download/ENCFF784VQV.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875SHW bigWig signal p-value ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF900SVA 605948669 ENCODE Processing Pipeline adf0c878237a216ca315a361b63ae49a https://www.encodeproject.org/files/ENCFF875SHW/@@download/ENCFF875SHW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF576QNF bigWig signal p-value ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF819ZGP 489307384 ENCODE Processing Pipeline 27daeb9d809357ba48a73cfbd336d3df https://www.encodeproject.org/files/ENCFF576QNF/@@download/ENCFF576QNF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF186CVZ bigWig signal p-value ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF819ZGP, ENCFF900SVA 670623418 ENCODE Processing Pipeline 322a54ea04eb541fc47818cf6a00b224 https://www.encodeproject.org/files/ENCFF186CVZ/@@download/ENCFF186CVZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF397PVN bigWig fold change over control ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF900SVA 579066413 ENCODE Processing Pipeline 9db8e9159f540caf5e4bab62e4a423bb https://www.encodeproject.org/files/ENCFF397PVN/@@download/ENCFF397PVN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF071RVQ bigWig fold change over control ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF819ZGP 532604336 ENCODE Processing Pipeline a8178dba16efdb55d433f78167e03c41 https://www.encodeproject.org/files/ENCFF071RVQ/@@download/ENCFF071RVQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF448DBP bigWig fold change over control ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF819ZGP, ENCFF900SVA 934806541 ENCODE Processing Pipeline 3540e9a9e3735ea7b0fc0bbbd24d296e https://www.encodeproject.org/files/ENCFF448DBP/@@download/ENCFF448DBP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF361EFH bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF819ZGP, ENCFF900SVA 6707040 ENCODE Processing Pipeline 912ea76eb7138d73b88dc33ff038d2cd https://www.encodeproject.org/files/ENCFF361EFH/@@download/ENCFF361EFH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF918BXV bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF900SVA 5980772 ENCODE Processing Pipeline 83302312b07d3f8e7ece2de66804b931 https://www.encodeproject.org/files/ENCFF918BXV/@@download/ENCFF918BXV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF803SFF bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF819ZGP 6206834 ENCODE Processing Pipeline 126c288415b44e1947026a2dceafca70 https://www.encodeproject.org/files/ENCFF803SFF/@@download/ENCFF803SFF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF361TVP bigBed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF918BXV 13210048 ENCODE Processing Pipeline 11ede9f0f646e0189243c152732a7f15 https://www.encodeproject.org/files/ENCFF361TVP/@@download/ENCFF361TVP.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF170AJS bigBed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF803SFF 13104827 ENCODE Processing Pipeline 407f33ee4061f86eca048a4b344d05e9 https://www.encodeproject.org/files/ENCFF170AJS/@@download/ENCFF170AJS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF945DTV bed narrowPeak conservative idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF361EFH, ENCFF419RSJ, ENCFF803SFF, ENCFF918BXV 418989 ENCODE Processing Pipeline 608831420ca27f242a0bfc1e61968cb5 https://www.encodeproject.org/files/ENCFF945DTV/@@download/ENCFF945DTV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF567KTD bigBed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF361EFH 13113693 ENCODE Processing Pipeline 1289f0f5ce80ac7e4f42135f71a573ee https://www.encodeproject.org/files/ENCFF567KTD/@@download/ENCFF567KTD.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670IRA bigBed narrowPeak optimal idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF277NOY 844247 ENCODE Processing Pipeline e44589f51226aa846834b7dde530bf70 https://www.encodeproject.org/files/ENCFF670IRA/@@download/ENCFF670IRA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF969THT bigBed narrowPeak conservative idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF945DTV 844983 ENCODE Processing Pipeline db429800dca0b7d984f22955734da066 https://www.encodeproject.org/files/ENCFF969THT/@@download/ENCFF969THT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF277NOY bed narrowPeak optimal idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF361EFH, ENCFF419RSJ, ENCFF803SFF, ENCFF918BXV 418411 ENCODE Processing Pipeline 340304a124aa603c0975e19190c40ca0 https://www.encodeproject.org/files/ENCFF277NOY/@@download/ENCFF277NOY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF066LAP bigWig signal p-value ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF784VQV 1168324102 ENCODE Processing Pipeline 6222d68d44661e0cb132230b11018a58 https://www.encodeproject.org/files/ENCFF066LAP/@@download/ENCFF066LAP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF950XKK bigWig signal p-value ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF998NVU 1199649249 ENCODE Processing Pipeline 0a52ea49c2c0333ef76cd92dd8fca1fc https://www.encodeproject.org/files/ENCFF950XKK/@@download/ENCFF950XKK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF424EQK bigWig signal p-value ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF784VQV, ENCFF998NVU 1566252520 ENCODE Processing Pipeline 8354cb692e21b04b5836985ac2294cb1 https://www.encodeproject.org/files/ENCFF424EQK/@@download/ENCFF424EQK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF704DKL bigWig fold change over control ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF784VQV 1066407713 ENCODE Processing Pipeline d8db5bbb05684f424be300e798fe9657 https://www.encodeproject.org/files/ENCFF704DKL/@@download/ENCFF704DKL.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF987SIX bigWig fold change over control ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF998NVU 1001855922 ENCODE Processing Pipeline a2932144520d96ae91042c09de49b51b https://www.encodeproject.org/files/ENCFF987SIX/@@download/ENCFF987SIX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF096WTD bigWig fold change over control ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF784VQV, ENCFF998NVU 1567214166 ENCODE Processing Pipeline 69b5b6bca76aa056447ad834516ef85b https://www.encodeproject.org/files/ENCFF096WTD/@@download/ENCFF096WTD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF585FQF bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF784VQV 6659834 ENCODE Processing Pipeline 65f50df48778d220b223b40af0ac03ed https://www.encodeproject.org/files/ENCFF585FQF/@@download/ENCFF585FQF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF631RPF bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF998NVU 6673513 ENCODE Processing Pipeline 297918d1376b90a3232336959e5dfdb3 https://www.encodeproject.org/files/ENCFF631RPF/@@download/ENCFF631RPF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF912JCV bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF784VQV, ENCFF998NVU 7056312 ENCODE Processing Pipeline 2c7cfb6df07407cd05d27dc8cfafd31d https://www.encodeproject.org/files/ENCFF912JCV/@@download/ENCFF912JCV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304KOZ bigBed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF585FQF 13283734 ENCODE Processing Pipeline a77686aa5796a58236974d04377f1d2b https://www.encodeproject.org/files/ENCFF304KOZ/@@download/ENCFF304KOZ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF817JTL bigBed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF631RPF 13011462 ENCODE Processing Pipeline ee454d43aa413e0b908eec58e6c62bb2 https://www.encodeproject.org/files/ENCFF817JTL/@@download/ENCFF817JTL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF660DYB bigBed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF912JCV 13103155 ENCODE Processing Pipeline ab8dcf130ea3314325dddac5f583c7dd https://www.encodeproject.org/files/ENCFF660DYB/@@download/ENCFF660DYB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003MKA bed narrowPeak conservative idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF585FQF, ENCFF631RPF, ENCFF912JCV 386382 ENCODE Processing Pipeline 3e46ee113c724c7ca0ef8d86e55eaace https://www.encodeproject.org/files/ENCFF003MKA/@@download/ENCFF003MKA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF263PJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF003MKA 833287 ENCODE Processing Pipeline 3fa69498c28f69ceac1ed2812e434bb2 https://www.encodeproject.org/files/ENCFF263PJZ/@@download/ENCFF263PJZ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF858RCV bed narrowPeak optimal idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF585FQF, ENCFF631RPF, ENCFF912JCV 385732 ENCODE Processing Pipeline 219803f44023f2e83c40b5f59d85bc48 https://www.encodeproject.org/files/ENCFF858RCV/@@download/ENCFF858RCV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF918KXJ bigBed narrowPeak optimal idr thresholded peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF858RCV 832398 ENCODE Processing Pipeline f6206c20bed07f709c1dc7c744d18175 https://www.encodeproject.org/files/ENCFF918KXJ/@@download/ENCFF918KXJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF100SGJ fastq reads ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 1 50 single-ended 1546790653 Richard Myers, HAIB 298f825295fcec7de481afb182a90441 SRA:SRR5339320 https://www.encodeproject.org/files/ENCFF100SGJ/@@download/ENCFF100SGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF821MJN fastq reads ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 1 50 single-ended 1186717752 Richard Myers, HAIB 404c266467c42448ce5252f8f669b34f SRA:SRR5339319 https://www.encodeproject.org/files/ENCFF821MJN/@@download/ENCFF821MJN.fastq.gz Illumina HiSeq 2000 /files/ENCFF913JVQ/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF889JSZ bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF100SGJ, ENCFF807MUK 1270080293 ENCODE Processing Pipeline b7ba1221d69865414ce4d8a84e7e6993 https://www.encodeproject.org/files/ENCFF889JSZ/@@download/ENCFF889JSZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF193ALV bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF807MUK, ENCFF821MJN 935800845 ENCODE Processing Pipeline b6d267b7a4d3cc10a23cda6eb91cecc0 https://www.encodeproject.org/files/ENCFF193ALV/@@download/ENCFF193ALV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF227WDE bigWig signal p-value ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF061QOJ, ENCFF095BVD, ENCFF444TNY, ENCFF709WYV 1243004184 ENCODE Processing Pipeline 2c50fe58b2f5ff8807db659277a27d21 https://www.encodeproject.org/files/ENCFF227WDE/@@download/ENCFF227WDE.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF511DBK bigWig fold change over control ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF061QOJ, ENCFF095BVD, ENCFF444TNY, ENCFF709WYV 1162467224 ENCODE Processing Pipeline 066faeb51bada5d4dececabecbdda61a https://www.encodeproject.org/files/ENCFF511DBK/@@download/ENCFF511DBK.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF610YQQ bam unfiltered alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 50 ENCFF100SGJ, ENCFF643CGH 1666388255 ENCODE Processing Pipeline 95a79814b865500d67388f92bea8eb92 https://www.encodeproject.org/files/ENCFF610YQQ/@@download/ENCFF610YQQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF921PES bam unfiltered alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 50 ENCFF643CGH, ENCFF821MJN 1281209292 ENCODE Processing Pipeline cfac68a8a19bc7d27a07fc12c97a91c0 https://www.encodeproject.org/files/ENCFF921PES/@@download/ENCFF921PES.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF512YJL bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 50 ENCFF100SGJ, ENCFF643CGH 1269599344 ENCODE Processing Pipeline af7a13a094cbfc65d61861c8592d4ce2 https://www.encodeproject.org/files/ENCFF512YJL/@@download/ENCFF512YJL.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF090SFR bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 50 ENCFF643CGH, ENCFF821MJN 935341586 ENCODE Processing Pipeline 5b5bc93902c434023216b2e1d7183707 https://www.encodeproject.org/files/ENCFF090SFR/@@download/ENCFF090SFR.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF357LSR bigWig signal p-value ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF332SVJ, ENCFF512YJL 750080504 ENCODE Processing Pipeline f07e4f18b13224212ade3646186e3c74 https://www.encodeproject.org/files/ENCFF357LSR/@@download/ENCFF357LSR.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF726ECH bigWig signal p-value ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF090SFR, ENCFF162ZOO 639782931 ENCODE Processing Pipeline 97be04a52d6b96b1b43ceb6ac357d0a9 https://www.encodeproject.org/files/ENCFF726ECH/@@download/ENCFF726ECH.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF248DQQ bigWig signal p-value ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF090SFR, ENCFF162ZOO, ENCFF332SVJ, ENCFF512YJL 1346948777 ENCODE Processing Pipeline de0cabd609e841b44980a9358a10b873 https://www.encodeproject.org/files/ENCFF248DQQ/@@download/ENCFF248DQQ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF656EDK bigWig fold change over control ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF332SVJ, ENCFF512YJL 592001584 ENCODE Processing Pipeline 0fd9b463db909f30b094ae284202c63c https://www.encodeproject.org/files/ENCFF656EDK/@@download/ENCFF656EDK.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF956ZZP bigWig fold change over control ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF090SFR, ENCFF162ZOO 454917758 ENCODE Processing Pipeline 883617aa522a5a4e6d0a9d6a9cd3ceba https://www.encodeproject.org/files/ENCFF956ZZP/@@download/ENCFF956ZZP.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF694DDU bigWig fold change over control ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF090SFR, ENCFF162ZOO, ENCFF332SVJ, ENCFF512YJL 1157982636 ENCODE Processing Pipeline 7fa9a19f242307aff00937625e23a6b7 https://www.encodeproject.org/files/ENCFF694DDU/@@download/ENCFF694DDU.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF867NYH bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF090SFR, ENCFF162ZOO, ENCFF332SVJ, ENCFF512YJL 6694469 ENCODE Processing Pipeline 4443b2f52359735db8559ae5077158e0 https://www.encodeproject.org/files/ENCFF867NYH/@@download/ENCFF867NYH.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF823FMJ bigBed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF736LSP 11199060 ENCODE Processing Pipeline 979bf518c0f732ed92271ecb824690a6 https://www.encodeproject.org/files/ENCFF823FMJ/@@download/ENCFF823FMJ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF883ODA bigBed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF867NYH 13454735 ENCODE Processing Pipeline 02bbc011d1667b4493927a3165083b48 https://www.encodeproject.org/files/ENCFF883ODA/@@download/ENCFF883ODA.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF529CTW bed narrowPeak conservative idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF736LSP, ENCFF867NYH, ENCFF953QWL 59369 ENCODE Processing Pipeline f559647127a153384e1d0729e29ada42 https://www.encodeproject.org/files/ENCFF529CTW/@@download/ENCFF529CTW.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF736LSP bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF332SVJ, ENCFF512YJL 5584155 ENCODE Processing Pipeline 5a0a61ede9d89286e74f9a63e52525c6 https://www.encodeproject.org/files/ENCFF736LSP/@@download/ENCFF736LSP.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF953QWL bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF090SFR, ENCFF162ZOO 5515829 ENCODE Processing Pipeline a6559f06dba3b2a1a7967c0b4a061391 https://www.encodeproject.org/files/ENCFF953QWL/@@download/ENCFF953QWL.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF382HOA bigBed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF953QWL 13292286 ENCODE Processing Pipeline c0e8880f4ec651fc817fcb45862acf0d https://www.encodeproject.org/files/ENCFF382HOA/@@download/ENCFF382HOA.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF123BAT bigBed narrowPeak conservative idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF529CTW 152155 ENCODE Processing Pipeline a3b38fdb4b6a4cf9236546426a70f067 https://www.encodeproject.org/files/ENCFF123BAT/@@download/ENCFF123BAT.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF739XTO bed narrowPeak optimal idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF736LSP, ENCFF867NYH, ENCFF953QWL 92277 ENCODE Processing Pipeline 6a857de42db30576df96a5224a3d56b8 https://www.encodeproject.org/files/ENCFF739XTO/@@download/ENCFF739XTO.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF521NPG bigBed narrowPeak optimal idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF739XTO 238627 ENCODE Processing Pipeline 8bd98c30b2d23236869bddb101dd3a2c https://www.encodeproject.org/files/ENCFF521NPG/@@download/ENCFF521NPG.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF337DCW bam unfiltered alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 50 ENCFF100SGJ, ENCFF807MUK 1662727921 ENCODE Processing Pipeline 8496922bc56221a4c2aa458b9fbc667c https://www.encodeproject.org/files/ENCFF337DCW/@@download/ENCFF337DCW.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF394DYO bam unfiltered alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 50 ENCFF807MUK, ENCFF821MJN 1277189234 ENCODE Processing Pipeline 7a2552505f86daddd44fbc94e096bef9 https://www.encodeproject.org/files/ENCFF394DYO/@@download/ENCFF394DYO.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF709WYV bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 50 ENCFF807MUK, ENCFF821MJN 935800873 ENCODE Processing Pipeline bfbe82c03beea28731796ebbef77ea27 https://www.encodeproject.org/files/ENCFF709WYV/@@download/ENCFF709WYV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF095BVD bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 50 ENCFF100SGJ, ENCFF807MUK 1270080323 ENCODE Processing Pipeline d942c8de90f3447fa116ba07c8071eaa https://www.encodeproject.org/files/ENCFF095BVD/@@download/ENCFF095BVD.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF269XNA bigWig fold change over control ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF061QOJ, ENCFF095BVD 603917166 ENCODE Processing Pipeline 29253956a0b148f013da763c8dfa0958 https://www.encodeproject.org/files/ENCFF269XNA/@@download/ENCFF269XNA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF997SXB bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF061QOJ, ENCFF095BVD 5589037 ENCODE Processing Pipeline decbba0f1d48cd087724ff92cac4575c https://www.encodeproject.org/files/ENCFF997SXB/@@download/ENCFF997SXB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF325KGM bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF061QOJ, ENCFF095BVD, ENCFF444TNY, ENCFF709WYV 6693331 ENCODE Processing Pipeline 8426882f9c1e9f96649011903ff68939 https://www.encodeproject.org/files/ENCFF325KGM/@@download/ENCFF325KGM.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF267VFV bigBed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF997SXB 11195455 ENCODE Processing Pipeline b5e49fa03f0ee1947f77e1119c74ca44 https://www.encodeproject.org/files/ENCFF267VFV/@@download/ENCFF267VFV.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF127XOZ bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF444TNY, ENCFF709WYV 5234413 ENCODE Processing Pipeline 2540b3700f187069edc19cf750478f22 https://www.encodeproject.org/files/ENCFF127XOZ/@@download/ENCFF127XOZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF687TKV bigBed narrowPeak conservative idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF209OUI 150782 ENCODE Processing Pipeline 0099b0118ab442e371675e53ee89fa3f https://www.encodeproject.org/files/ENCFF687TKV/@@download/ENCFF687TKV.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF316GIH bigWig signal p-value ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF061QOJ, ENCFF095BVD 851354104 ENCODE Processing Pipeline 56bbd96e26eebfc14baffdd1f2aa0b08 https://www.encodeproject.org/files/ENCFF316GIH/@@download/ENCFF316GIH.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF051BIA bigWig fold change over control ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF444TNY, ENCFF709WYV 420026095 ENCODE Processing Pipeline 86c7ad4048a32ab7ac6541b063e2d2b5 https://www.encodeproject.org/files/ENCFF051BIA/@@download/ENCFF051BIA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF568VQS bigBed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF127XOZ 13211674 ENCODE Processing Pipeline 4177a56cb224a764fe3c6165b932152b https://www.encodeproject.org/files/ENCFF568VQS/@@download/ENCFF568VQS.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF368FRQ bigBed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF325KGM 13441918 ENCODE Processing Pipeline a2e3e42059607c3e3d65b5256420b06d https://www.encodeproject.org/files/ENCFF368FRQ/@@download/ENCFF368FRQ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF209OUI bed narrowPeak conservative idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF127XOZ, ENCFF325KGM, ENCFF997SXB 59020 ENCODE Processing Pipeline 5ab02af87b3770c3fb0b0d8b956220e9 https://www.encodeproject.org/files/ENCFF209OUI/@@download/ENCFF209OUI.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF491ERB bigBed narrowPeak optimal idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF426DUB 241770 ENCODE Processing Pipeline 10616fb9d5417123934677f1cd8be1b2 https://www.encodeproject.org/files/ENCFF491ERB/@@download/ENCFF491ERB.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF604ULO bigWig signal p-value ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF444TNY, ENCFF709WYV 568843484 ENCODE Processing Pipeline 4e509084d389c2323cbf08880677b9fe https://www.encodeproject.org/files/ENCFF604ULO/@@download/ENCFF604ULO.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF426DUB bed narrowPeak optimal idr thresholded peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF127XOZ, ENCFF325KGM, ENCFF997SXB 95173 ENCODE Processing Pipeline 9f0888598e4c0a94620276153bf94d46 https://www.encodeproject.org/files/ENCFF426DUB/@@download/ENCFF426DUB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF668XNA fastq reads ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF299MXH 2783674190 Richard Myers, HAIB 4c94f766015e867e6a9cad58177b507e SRA:SRR6212964 https://www.encodeproject.org/files/ENCFF668XNA/@@download/ENCFF668XNA.fastq.gz Illumina HiSeq 2000 /files/ENCFF875MBM/ released antibody characterized with exemption missing control alignments ENCFF299MXH fastq reads ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF668XNA 2832695157 Richard Myers, HAIB cf7969e068fbfe8d9c94457768a61481 SRA:SRR6212964 https://www.encodeproject.org/files/ENCFF299MXH/@@download/ENCFF299MXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF267TPL/ released antibody characterized with exemption missing control alignments ENCFF116QLL bam alignments ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF299MXH, ENCFF668XNA, ENCFF807MUK 4916883956 ENCODE Processing Pipeline 12f3ea9e4b40e5a7fbf3efb41e1cadee https://www.encodeproject.org/files/ENCFF116QLL/@@download/ENCFF116QLL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF286TIN bam unfiltered alignments ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF299MXH, ENCFF668XNA, ENCFF807MUK 6596841133 ENCODE Processing Pipeline 943441fb4c891c1336580b5af725cca0 https://www.encodeproject.org/files/ENCFF286TIN/@@download/ENCFF286TIN.bam hg19 released antibody characterized with exemption missing control alignments ENCFF297HVO bam unfiltered alignments ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF299MXH, ENCFF643CGH, ENCFF668XNA 6622300904 ENCODE Processing Pipeline 1eb0825b3306fc09b19360e31c0aa4cb https://www.encodeproject.org/files/ENCFF297HVO/@@download/ENCFF297HVO.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF187XIG bam alignments ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF299MXH, ENCFF643CGH, ENCFF668XNA 4919182361 ENCODE Processing Pipeline 0f15b416f8245b87b3355d9fbf96cb26 https://www.encodeproject.org/files/ENCFF187XIG/@@download/ENCFF187XIG.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF033TSQ bigWig fold change over control ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116QLL 2262263096 ENCODE Processing Pipeline ab0c97be047f5dca50532fc4df9e94f1 https://www.encodeproject.org/files/ENCFF033TSQ/@@download/ENCFF033TSQ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF651APA bed narrowPeak peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116QLL 6869935 ENCODE Processing Pipeline 005f800ce8193fa33ec1214886e6d4dc https://www.encodeproject.org/files/ENCFF651APA/@@download/ENCFF651APA.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF919WYW bigBed narrowPeak peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF651APA 11867640 ENCODE Processing Pipeline 5f38d14a6ce6310405e3e392353b2b58 https://www.encodeproject.org/files/ENCFF919WYW/@@download/ENCFF919WYW.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF733JNB bed narrowPeak peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF187XIG 6870851 ENCODE Processing Pipeline 65d0a1635bd6234cf6d0297a98dbd6e7 https://www.encodeproject.org/files/ENCFF733JNB/@@download/ENCFF733JNB.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF581DTH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF651APA 299104 ENCODE Processing Pipeline fab833dcd83a585382c7c7cc5039d645 https://www.encodeproject.org/files/ENCFF581DTH/@@download/ENCFF581DTH.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF410UFX bigWig fold change over control ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF187XIG 2251984572 ENCODE Processing Pipeline 41c1fcf0961c4abd922197eab4cd9b12 https://www.encodeproject.org/files/ENCFF410UFX/@@download/ENCFF410UFX.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF973VAM bigBed narrowPeak peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF733JNB 11879803 ENCODE Processing Pipeline a7f4ac0fc44047bcfcbf94eedad0b7aa https://www.encodeproject.org/files/ENCFF973VAM/@@download/ENCFF973VAM.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF231LOU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF733JNB 295330 ENCODE Processing Pipeline 28b1594b2ae4c8ebfff700e9cafaa231 https://www.encodeproject.org/files/ENCFF231LOU/@@download/ENCFF231LOU.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF161LND bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF581DTH 568264 ENCODE Processing Pipeline 2bf1e342891244184d2025e6aa9f1264 https://www.encodeproject.org/files/ENCFF161LND/@@download/ENCFF161LND.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF609GTJ bigWig signal p-value ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF187XIG 2370814255 ENCODE Processing Pipeline aa070df8711e74e0e4772170bb1b075a https://www.encodeproject.org/files/ENCFF609GTJ/@@download/ENCFF609GTJ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF974FVZ bigWig signal p-value ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116QLL 2142557004 ENCODE Processing Pipeline 15f5864157716fba1a1eeea3bf9c4542 https://www.encodeproject.org/files/ENCFF974FVZ/@@download/ENCFF974FVZ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF413PSO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF231LOU 564644 ENCODE Processing Pipeline 142aede6dfe00e919bc5e909114f8dfb https://www.encodeproject.org/files/ENCFF413PSO/@@download/ENCFF413PSO.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF943IGO fastq reads ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF283GGY 1600582243 Richard Myers, HAIB fa5d7054e7a0ab2dc8a39a6da17632b4 SRA:SRR6213392 https://www.encodeproject.org/files/ENCFF943IGO/@@download/ENCFF943IGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF015QBJ/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF283GGY fastq reads ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF943IGO 1685011665 Richard Myers, HAIB 6997343c361b29442c0efbd0daf292b0 SRA:SRR6213392 https://www.encodeproject.org/files/ENCFF283GGY/@@download/ENCFF283GGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF062WKC/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF545ZJY bam unfiltered alignments ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF283GGY, ENCFF643CGH, ENCFF943IGO 3981507513 ENCODE Processing Pipeline a85f9a85ab449c1d585e92e3359d914d https://www.encodeproject.org/files/ENCFF545ZJY/@@download/ENCFF545ZJY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF575GUT bam unfiltered alignments ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF283GGY, ENCFF807MUK, ENCFF943IGO 3973270093 ENCODE Processing Pipeline c6e7e3522693039f96c5ba7ac3a42351 https://www.encodeproject.org/files/ENCFF575GUT/@@download/ENCFF575GUT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF181CGW bam alignments ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF283GGY, ENCFF643CGH, ENCFF943IGO 2653087494 ENCODE Processing Pipeline 2c547df8008032db2934855f38a7e677 https://www.encodeproject.org/files/ENCFF181CGW/@@download/ENCFF181CGW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF257LFE bam alignments ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF283GGY, ENCFF807MUK, ENCFF943IGO 2651755399 ENCODE Processing Pipeline f4a140f62e0acd9c75548bf48f26be63 https://www.encodeproject.org/files/ENCFF257LFE/@@download/ENCFF257LFE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF441IFJ bigWig signal p-value ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF181CGW 1098748234 ENCODE Processing Pipeline ab776dda366e7c175149c13b33d5aedb https://www.encodeproject.org/files/ENCFF441IFJ/@@download/ENCFF441IFJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF757KZD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF777YLJ 2741 ENCODE Processing Pipeline 09e4b30a37143d8fd262e59af04c3aa5 https://www.encodeproject.org/files/ENCFF757KZD/@@download/ENCFF757KZD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF381CZQ bigWig fold change over control ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF181CGW 879207023 ENCODE Processing Pipeline fb1586c171f70b2ec631367fbb665d11 https://www.encodeproject.org/files/ENCFF381CZQ/@@download/ENCFF381CZQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF777YLJ bed narrowPeak peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF181CGW 6792434 ENCODE Processing Pipeline b2cd0adc9b69d217e6d47eeb881e2dae https://www.encodeproject.org/files/ENCFF777YLJ/@@download/ENCFF777YLJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF756SCW bigBed narrowPeak peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF777YLJ 10842533 ENCODE Processing Pipeline 46a3138c0c89a7be43d29f3fa3bcf803 https://www.encodeproject.org/files/ENCFF756SCW/@@download/ENCFF756SCW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF068SUB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF757KZD 62859 ENCODE Processing Pipeline 45b28b09755576ca52f95eb31a2c316d https://www.encodeproject.org/files/ENCFF068SUB/@@download/ENCFF068SUB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF826OPR bigWig signal p-value ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF257LFE 946372227 ENCODE Processing Pipeline 625a2aff6e3498236bddb8fb611afd4a https://www.encodeproject.org/files/ENCFF826OPR/@@download/ENCFF826OPR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF364KDX bigWig fold change over control ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF257LFE 868796199 ENCODE Processing Pipeline 0d74bd1ec389e76e945d863ce707c261 https://www.encodeproject.org/files/ENCFF364KDX/@@download/ENCFF364KDX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF874MIZ bed narrowPeak peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF257LFE 6608434 ENCODE Processing Pipeline bd356fdc391777a77a1c5fe4fb3c377a https://www.encodeproject.org/files/ENCFF874MIZ/@@download/ENCFF874MIZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF359IIT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF079ZWQ 58150 ENCODE Processing Pipeline 0d46bf402469a6083aab2536f63f169a https://www.encodeproject.org/files/ENCFF359IIT/@@download/ENCFF359IIT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF079ZWQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF874MIZ 4301 ENCODE Processing Pipeline d0f6bc35721329835a17624eacc9a845 https://www.encodeproject.org/files/ENCFF079ZWQ/@@download/ENCFF079ZWQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF089JPG bigBed narrowPeak peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF874MIZ 10629625 ENCODE Processing Pipeline 73338ee81116212d2bf4a3880f603b24 https://www.encodeproject.org/files/ENCFF089JPG/@@download/ENCFF089JPG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF416SAW fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF058YFW 2826005831 Michael Snyder, Stanford 6284bfc9da4ca21ddd3087754e8a3162 SRA:SRR6213938 https://www.encodeproject.org/files/ENCFF416SAW/@@download/ENCFF416SAW.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF017DPB fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF659OJS 2728655362 Michael Snyder, Stanford adf99a8f9252fa12c681e60def547cfd SRA:SRR6213939 https://www.encodeproject.org/files/ENCFF017DPB/@@download/ENCFF017DPB.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF058YFW fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF416SAW 3416265385 Michael Snyder, Stanford ee1a23cc2d221d71622978b2f9c00e82 SRA:SRR6213938 https://www.encodeproject.org/files/ENCFF058YFW/@@download/ENCFF058YFW.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF659OJS fastq reads ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF017DPB 2496394180 Michael Snyder, Stanford f22c84b46e12cc92f1dc2b59a9886df1 SRA:SRR6213939 https://www.encodeproject.org/files/ENCFF659OJS/@@download/ENCFF659OJS.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF276HHB bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF643CGH, ENCFF659OJS 5047527094 ENCODE Processing Pipeline 42175713ecca972562d959547b77ac5a https://www.encodeproject.org/files/ENCFF276HHB/@@download/ENCFF276HHB.bam GRCh38 released mild to moderate bottlenecking ENCFF815TDC bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF659OJS, ENCFF807MUK 5042429148 ENCODE Processing Pipeline cbf21404e31e024ba565cfb9b8bda1c1 https://www.encodeproject.org/files/ENCFF815TDC/@@download/ENCFF815TDC.bam hg19 released mild to moderate bottlenecking ENCFF339LDW bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF643CGH 4776278706 ENCODE Processing Pipeline b2a063ef74b94e391928a01ae25cb52f https://www.encodeproject.org/files/ENCFF339LDW/@@download/ENCFF339LDW.bam GRCh38 released mild to moderate bottlenecking ENCFF271DGV bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF807MUK 5945568459 ENCODE Processing Pipeline 1f05a93df867c9bffdca8ef8862169f5 https://www.encodeproject.org/files/ENCFF271DGV/@@download/ENCFF271DGV.bam hg19 released mild to moderate bottlenecking ENCFF828ZWQ bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF659OJS, ENCFF807MUK 4225644077 ENCODE Processing Pipeline 3bd8ffc3c3486372ec6da00d3a1f7cfd https://www.encodeproject.org/files/ENCFF828ZWQ/@@download/ENCFF828ZWQ.bam hg19 released mild to moderate bottlenecking ENCFF506OTR bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF643CGH, ENCFF659OJS 4229797780 ENCODE Processing Pipeline 84cda950a8c0484e581226e3bd4c8be9 https://www.encodeproject.org/files/ENCFF506OTR/@@download/ENCFF506OTR.bam GRCh38 released mild to moderate bottlenecking ENCFF247RDS bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF807MUK 4770694931 ENCODE Processing Pipeline 2b7a62c960809ac1b30c35b37417d62f https://www.encodeproject.org/files/ENCFF247RDS/@@download/ENCFF247RDS.bam hg19 released mild to moderate bottlenecking ENCFF568JKN bam unfiltered alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF643CGH 5951532269 ENCODE Processing Pipeline 2e88436db30e1a474faa48bab449c281 https://www.encodeproject.org/files/ENCFF568JKN/@@download/ENCFF568JKN.bam GRCh38 released mild to moderate bottlenecking ENCFF166KIM bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF247RDS, ENCFF592WAL, ENCFF828ZWQ, ENCFF901CND 1945134409 ENCODE Processing Pipeline d57284ace28ae554c5ab90ec648d1ad0 https://www.encodeproject.org/files/ENCFF166KIM/@@download/ENCFF166KIM.bigWig hg19 released mild to moderate bottlenecking ENCFF051OMX bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF159DHF 13357844 ENCODE Processing Pipeline f1b6abe1d788e7b1a6ed268f067c72f3 https://www.encodeproject.org/files/ENCFF051OMX/@@download/ENCFF051OMX.bigBed hg19 released mild to moderate bottlenecking ENCFF826XOP bigBed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF340WUW 789518 ENCODE Processing Pipeline 2038ca15528e47c845b23778dbc8e835 https://www.encodeproject.org/files/ENCFF826XOP/@@download/ENCFF826XOP.bigBed hg19 released mild to moderate bottlenecking ENCFF943UBF bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 1328575152 ENCODE Processing Pipeline 1d76c3c540a245712974bb97b63619e3 https://www.encodeproject.org/files/ENCFF943UBF/@@download/ENCFF943UBF.bigWig hg19 released mild to moderate bottlenecking ENCFF421DPZ bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 1302733681 ENCODE Processing Pipeline f96d4dfe3057b5a563d88136bf0d55a1 https://www.encodeproject.org/files/ENCFF421DPZ/@@download/ENCFF421DPZ.bigWig hg19 released mild to moderate bottlenecking ENCFF998TIE bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 1765948288 ENCODE Processing Pipeline a37f1654649b6420f136dc55f10fbee9 https://www.encodeproject.org/files/ENCFF998TIE/@@download/ENCFF998TIE.bigWig hg19 released mild to moderate bottlenecking ENCFF478DRD bed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF159DHF, ENCFF552GWT, ENCFF647XXJ 440679 ENCODE Processing Pipeline 545da82e161a822b31f7d0093071ede2 https://www.encodeproject.org/files/ENCFF478DRD/@@download/ENCFF478DRD.bed.gz hg19 released mild to moderate bottlenecking ENCFF496ZEL bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF506OTR, ENCFF666ATR 1292558746 ENCODE Processing Pipeline bcd0eef8e4119fab0cfe9b89d6631c33 https://www.encodeproject.org/files/ENCFF496ZEL/@@download/ENCFF496ZEL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF052STI bed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224QHU, ENCFF419RSJ, ENCFF604RNE, ENCFF869GMP 437271 ENCODE Processing Pipeline 2a242fdac83016945a0c6ac41f0622fd https://www.encodeproject.org/files/ENCFF052STI/@@download/ENCFF052STI.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF943WFE bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF247RDS, ENCFF592WAL, ENCFF828ZWQ, ENCFF901CND 2381652887 ENCODE Processing Pipeline 87fb6ac1ba3b61dede214d111489ecfc https://www.encodeproject.org/files/ENCFF943WFE/@@download/ENCFF943WFE.bigWig hg19 released mild to moderate bottlenecking ENCFF437ZLO bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF506OTR, ENCFF666ATR 1308489560 ENCODE Processing Pipeline fca8c9d4a030e198482afa358b7a3457 https://www.encodeproject.org/files/ENCFF437ZLO/@@download/ENCFF437ZLO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF869GMP bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF506OTR, ENCFF666ATR 7031892 ENCODE Processing Pipeline 442ab48630065be639661ad29c119581 https://www.encodeproject.org/files/ENCFF869GMP/@@download/ENCFF869GMP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF224QHU bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF339LDW, ENCFF666ATR 6961678 ENCODE Processing Pipeline 6f4c06fd74cc06931a2e70162a370230 https://www.encodeproject.org/files/ENCFF224QHU/@@download/ENCFF224QHU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604RNE bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF322NTO, ENCFF339LDW, ENCFF506OTR, ENCFF666ATR 7316428 ENCODE Processing Pipeline 33b8bd77463f4d7c52949d4fe8c4e0ca https://www.encodeproject.org/files/ENCFF604RNE/@@download/ENCFF604RNE.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF159DHF bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 6956643 ENCODE Processing Pipeline 386e1410c31aac2d42b56a1661363bc5 https://www.encodeproject.org/files/ENCFF159DHF/@@download/ENCFF159DHF.bed.gz hg19 released mild to moderate bottlenecking ENCFF647XXJ bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF247RDS, ENCFF592WAL, ENCFF828ZWQ, ENCFF901CND 7310249 ENCODE Processing Pipeline d0c42e133927d6fa0d169bdca3d754bb https://www.encodeproject.org/files/ENCFF647XXJ/@@download/ENCFF647XXJ.bed.gz hg19 released mild to moderate bottlenecking ENCFF113KBU bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF552GWT 13059659 ENCODE Processing Pipeline 6ca4e2be8e850e1413f35ce50df6e334 https://www.encodeproject.org/files/ENCFF113KBU/@@download/ENCFF113KBU.bigBed hg19 released mild to moderate bottlenecking ENCFF552GWT bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 7029358 ENCODE Processing Pipeline 65b8cfef03b9dc79d02f3cde64755b8c https://www.encodeproject.org/files/ENCFF552GWT/@@download/ENCFF552GWT.bed.gz hg19 released mild to moderate bottlenecking ENCFF613CVN bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF647XXJ 13070498 ENCODE Processing Pipeline 564abce1e514f1da65684e13ea9df433 https://www.encodeproject.org/files/ENCFF613CVN/@@download/ENCFF613CVN.bigBed hg19 released mild to moderate bottlenecking ENCFF021WZH bigBed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF478DRD 881170 ENCODE Processing Pipeline 475f6bce08f88322a409d854327c08c4 https://www.encodeproject.org/files/ENCFF021WZH/@@download/ENCFF021WZH.bigBed hg19 released mild to moderate bottlenecking ENCFF885UGW bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF339LDW, ENCFF666ATR 1835397515 ENCODE Processing Pipeline 116737be10dd10330a0116fe46e44d41 https://www.encodeproject.org/files/ENCFF885UGW/@@download/ENCFF885UGW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF807USB bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF604RNE 13083447 ENCODE Processing Pipeline cc9e6464569109e1188a50396da7dd41 https://www.encodeproject.org/files/ENCFF807USB/@@download/ENCFF807USB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF697SGW bigBed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF815RKD 795528 ENCODE Processing Pipeline 28bd0491e780b24ed295d191ed145ed0 https://www.encodeproject.org/files/ENCFF697SGW/@@download/ENCFF697SGW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF640RPR bigBed narrowPeak optimal idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF052STI 877394 ENCODE Processing Pipeline a6ade70079107b6f463ae21a5db63622 https://www.encodeproject.org/files/ENCFF640RPR/@@download/ENCFF640RPR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF484RBP bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 1835035868 ENCODE Processing Pipeline 022348452d94e1fa61dd7a5301d53692 https://www.encodeproject.org/files/ENCFF484RBP/@@download/ENCFF484RBP.bigWig hg19 released mild to moderate bottlenecking ENCFF340WUW bed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF159DHF, ENCFF552GWT, ENCFF647XXJ 385876 ENCODE Processing Pipeline 37efc4cd7655ee72af44aac3ce2c4428 https://www.encodeproject.org/files/ENCFF340WUW/@@download/ENCFF340WUW.bed.gz hg19 released mild to moderate bottlenecking ENCFF222EWJ bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF869GMP 13065438 ENCODE Processing Pipeline 162fefcfcfce90214c3beef171465b99 https://www.encodeproject.org/files/ENCFF222EWJ/@@download/ENCFF222EWJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF108TSF bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF322NTO, ENCFF339LDW, ENCFF666ATR 1790387450 ENCODE Processing Pipeline 5af02098ec44c7b88ad40f99101a7754 https://www.encodeproject.org/files/ENCFF108TSF/@@download/ENCFF108TSF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF933PRL bigWig signal p-value ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF322NTO, ENCFF339LDW, ENCFF506OTR, ENCFF666ATR 2244418716 ENCODE Processing Pipeline 1009878b861fd9840ca75d9ee0693c7e https://www.encodeproject.org/files/ENCFF933PRL/@@download/ENCFF933PRL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF562RHH bigWig fold change over control ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF322NTO, ENCFF339LDW, ENCFF506OTR, ENCFF666ATR 2382698317 ENCODE Processing Pipeline 08670e628a314bdacaa4f1cb81fbc7c5 https://www.encodeproject.org/files/ENCFF562RHH/@@download/ENCFF562RHH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF477NOJ bigBed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF224QHU 13369534 ENCODE Processing Pipeline 283f6673d5588e796fd7818c22fcdd5b https://www.encodeproject.org/files/ENCFF477NOJ/@@download/ENCFF477NOJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF815RKD bed narrowPeak conservative idr thresholded peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224QHU, ENCFF419RSJ, ENCFF604RNE, ENCFF869GMP 387748 ENCODE Processing Pipeline 440623570426429f5cf803479aaf926c https://www.encodeproject.org/files/ENCFF815RKD/@@download/ENCFF815RKD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF956IEA fastq reads ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF836HTT 2246658550 Richard Myers, HAIB 7a82f83c36cf2884b8b21467dbf047f4 SRA:SRR6213061 https://www.encodeproject.org/files/ENCFF956IEA/@@download/ENCFF956IEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF803CYD/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF836HTT fastq reads ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF956IEA 2350070508 Richard Myers, HAIB a8a188aa15feba0a1727ab3279ac447e SRA:SRR6213061 https://www.encodeproject.org/files/ENCFF836HTT/@@download/ENCFF836HTT.fastq.gz Illumina HiSeq 2000 /files/ENCFF180WPD/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF540TEB bam alignments ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF836HTT, ENCFF956IEA 3945092638 ENCODE Processing Pipeline 823d7b1ef64b7d99c98c980b6e5e964b https://www.encodeproject.org/files/ENCFF540TEB/@@download/ENCFF540TEB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF003ZEM bam unfiltered alignments ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF836HTT, ENCFF956IEA 5513354603 ENCODE Processing Pipeline c8bb4ea5cb0ba0ffb382013636f8829f https://www.encodeproject.org/files/ENCFF003ZEM/@@download/ENCFF003ZEM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF940CLF bam unfiltered alignments ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF836HTT, ENCFF956IEA 5542390763 ENCODE Processing Pipeline 9f3fc86853eb25164b08f74c9b18c3bc https://www.encodeproject.org/files/ENCFF940CLF/@@download/ENCFF940CLF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF647USM bam alignments ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF836HTT, ENCFF956IEA 3950023917 ENCODE Processing Pipeline 100896793c3c42f58e57ea9aaf8b70d4 https://www.encodeproject.org/files/ENCFF647USM/@@download/ENCFF647USM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF406PWQ bigWig signal p-value ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF647USM 1564328202 ENCODE Processing Pipeline a549cf4895ca3a2d6cf1e59ea259086d https://www.encodeproject.org/files/ENCFF406PWQ/@@download/ENCFF406PWQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF384VWO bigWig fold change over control ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF647USM 1472421603 ENCODE Processing Pipeline 88f590e4919f9c9d62aa692c5cc283e6 https://www.encodeproject.org/files/ENCFF384VWO/@@download/ENCFF384VWO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF906VTL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF274MOA, ENCFF419RSJ 503 ENCODE Processing Pipeline 48802e8c273c16d75d6e39b284721fe4 https://www.encodeproject.org/files/ENCFF906VTL/@@download/ENCFF906VTL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF274MOA bed narrowPeak peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF647USM 5798400 ENCODE Processing Pipeline 6e593794c770ef929bd1fbe9d5d11f9c https://www.encodeproject.org/files/ENCFF274MOA/@@download/ENCFF274MOA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF568FAS bigBed narrowPeak peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF274MOA 10783989 ENCODE Processing Pipeline fea5758ca5e15926b05b72c05aec36b4 https://www.encodeproject.org/files/ENCFF568FAS/@@download/ENCFF568FAS.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF202ADI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF906VTL 22188 ENCODE Processing Pipeline f5de9196bdd74896097b00d4321fc81b https://www.encodeproject.org/files/ENCFF202ADI/@@download/ENCFF202ADI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF993FLG bigWig signal p-value ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF540TEB 1547110863 ENCODE Processing Pipeline 8020794fe4eae914a657def0769e0045 https://www.encodeproject.org/files/ENCFF993FLG/@@download/ENCFF993FLG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF647SXX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF037OER 1040 ENCODE Processing Pipeline 9c92fb93a075b3a51b07a266b04b6c57 https://www.encodeproject.org/files/ENCFF647SXX/@@download/ENCFF647SXX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF638AYW bigWig fold change over control ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF540TEB 1473238750 ENCODE Processing Pipeline c9079b29b7bcc1717c35f02c92a9d1c9 https://www.encodeproject.org/files/ENCFF638AYW/@@download/ENCFF638AYW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF037OER bed narrowPeak peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF540TEB 6381640 ENCODE Processing Pipeline 7d9497f3a57f423bbea4e87875962eb8 https://www.encodeproject.org/files/ENCFF037OER/@@download/ENCFF037OER.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF897LRG bigBed narrowPeak peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF037OER 11496059 ENCODE Processing Pipeline b3c63a52de549ad4674936a89e66be3f https://www.encodeproject.org/files/ENCFF897LRG/@@download/ENCFF897LRG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF094OEE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF647SXX 76709 ENCODE Processing Pipeline 6822e9132f28da0fe678a6a349d7d256 https://www.encodeproject.org/files/ENCFF094OEE/@@download/ENCFF094OEE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF312JMJ fastq reads ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF271TKP 1963419535 Richard Myers, HAIB 01ef5b814c68f044c7f9efccb2314d03 SRA:SRR6213383 https://www.encodeproject.org/files/ENCFF312JMJ/@@download/ENCFF312JMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF589EEX/ released antibody characterized with exemption missing control alignments ENCFF271TKP fastq reads ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF312JMJ 1883393410 Richard Myers, HAIB 9d11342e284dbff330ab2059e4b3ac45 SRA:SRR6213383 https://www.encodeproject.org/files/ENCFF271TKP/@@download/ENCFF271TKP.fastq.gz Illumina HiSeq 2000 /files/ENCFF732JFN/ released antibody characterized with exemption missing control alignments ENCFF668QFL bam unfiltered alignments ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF271TKP, ENCFF312JMJ, ENCFF807MUK 4674267266 ENCODE Processing Pipeline c5609c81eaab790b61989064f704fc35 https://www.encodeproject.org/files/ENCFF668QFL/@@download/ENCFF668QFL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF477OJL bam alignments ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF271TKP, ENCFF312JMJ, ENCFF807MUK 3505224849 ENCODE Processing Pipeline 0ecb83ac3845affa1d26228e2ae579bb https://www.encodeproject.org/files/ENCFF477OJL/@@download/ENCFF477OJL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF592ZLX bam unfiltered alignments ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF271TKP, ENCFF312JMJ, ENCFF643CGH 4691047623 ENCODE Processing Pipeline 3889a0601b4a8ffc029de93fab8490c6 https://www.encodeproject.org/files/ENCFF592ZLX/@@download/ENCFF592ZLX.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF369KMY bam alignments ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF271TKP, ENCFF312JMJ, ENCFF643CGH 3507694968 ENCODE Processing Pipeline 4c5ad7fa65e6b67eb494ac4da3997ca4 https://www.encodeproject.org/files/ENCFF369KMY/@@download/ENCFF369KMY.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF258FCQ bigWig fold change over control ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF369KMY 1127504678 ENCODE Processing Pipeline 2aeadc1fa98e4a0c7ecedc8dc51c1d45 https://www.encodeproject.org/files/ENCFF258FCQ/@@download/ENCFF258FCQ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF607RUW bed narrowPeak peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF369KMY 6637950 ENCODE Processing Pipeline 33c0e9d5a4e038251fb6d41ebf46f151 https://www.encodeproject.org/files/ENCFF607RUW/@@download/ENCFF607RUW.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF041STG bigBed narrowPeak peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF607RUW 11231234 ENCODE Processing Pipeline 01e149dece1f0bc80b14fb6571e066e9 https://www.encodeproject.org/files/ENCFF041STG/@@download/ENCFF041STG.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF978RPI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF607RUW 1484 ENCODE Processing Pipeline 44bed463ea48da3123a52131bfa6b59b https://www.encodeproject.org/files/ENCFF978RPI/@@download/ENCFF978RPI.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF052LID bigWig signal p-value ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF369KMY 1169851671 ENCODE Processing Pipeline 1a05175c99a1479c5af0a8dc28f9539f https://www.encodeproject.org/files/ENCFF052LID/@@download/ENCFF052LID.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF334BGA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF978RPI 79628 ENCODE Processing Pipeline 8c52938993de040489bae2bf2310f50f https://www.encodeproject.org/files/ENCFF334BGA/@@download/ENCFF334BGA.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF354WUT bigWig signal p-value ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF477OJL 1333401835 ENCODE Processing Pipeline 0c088760281dc5dc61d1f7410f860ef0 https://www.encodeproject.org/files/ENCFF354WUT/@@download/ENCFF354WUT.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF249NBL bigWig fold change over control ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF477OJL 1135177597 ENCODE Processing Pipeline b88bd6859126fc4961b0ebf2553c8aaf https://www.encodeproject.org/files/ENCFF249NBL/@@download/ENCFF249NBL.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF484FFL bed narrowPeak peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF477OJL 6478668 ENCODE Processing Pipeline a1f4e5f7bd44b1c1a53e806299af61df https://www.encodeproject.org/files/ENCFF484FFL/@@download/ENCFF484FFL.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF209VXA bigBed narrowPeak peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF484FFL 11042542 ENCODE Processing Pipeline 30ba821aae8b9fe057c8023fa5644371 https://www.encodeproject.org/files/ENCFF209VXA/@@download/ENCFF209VXA.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF666CBK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF996UFS 70495 ENCODE Processing Pipeline a625d28dbd89e63dc53d3e258804a72d https://www.encodeproject.org/files/ENCFF666CBK/@@download/ENCFF666CBK.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF996UFS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF484FFL 3540 ENCODE Processing Pipeline 448a77046313d13881dfd28d4939af81 https://www.encodeproject.org/files/ENCFF996UFS/@@download/ENCFF996UFS.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF813LLQ fastq reads ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF742HCJ 1863191915 Richard Myers, HAIB 4c74b6145375d2ae8f6a87e7b9be31de SRA:SRR6213854 https://www.encodeproject.org/files/ENCFF813LLQ/@@download/ENCFF813LLQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF126ZEQ/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF742HCJ fastq reads ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF813LLQ 1958325529 Richard Myers, HAIB 811b1e42fff3eb4dc2b1fd2e257c301a SRA:SRR6213854 https://www.encodeproject.org/files/ENCFF742HCJ/@@download/ENCFF742HCJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF931XXU/ released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF680MFW bam unfiltered alignments ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF742HCJ, ENCFF807MUK, ENCFF813LLQ 4493201585 ENCODE Processing Pipeline 41a4f6e6ca810434873e03c70cfba843 https://www.encodeproject.org/files/ENCFF680MFW/@@download/ENCFF680MFW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF418BQZ bam alignments ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF742HCJ, ENCFF807MUK, ENCFF813LLQ 2996077988 ENCODE Processing Pipeline 6a0d77aebc8da2607a36c7c515fb0902 https://www.encodeproject.org/files/ENCFF418BQZ/@@download/ENCFF418BQZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF489UTO bam alignments ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF742HCJ, ENCFF813LLQ 2996792182 ENCODE Processing Pipeline 7ebb2573713bb32b73a6f5437fd3cbd3 https://www.encodeproject.org/files/ENCFF489UTO/@@download/ENCFF489UTO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF367CDJ bam unfiltered alignments ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF742HCJ, ENCFF813LLQ 4507708082 ENCODE Processing Pipeline f0dec4540e3e478b51b24046e153d713 https://www.encodeproject.org/files/ENCFF367CDJ/@@download/ENCFF367CDJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF372ROO bigWig signal p-value ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489UTO 1077829999 ENCODE Processing Pipeline 379597964551a2362b611e4ac1f09726 https://www.encodeproject.org/files/ENCFF372ROO/@@download/ENCFF372ROO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF004UZT bigWig fold change over control ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489UTO 1110300764 ENCODE Processing Pipeline 180777adb660e19fd430beada638108a https://www.encodeproject.org/files/ENCFF004UZT/@@download/ENCFF004UZT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF848EEE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF565EAB 333908 ENCODE Processing Pipeline 8e37167c162cc8b0e14b243a626c5360 https://www.encodeproject.org/files/ENCFF848EEE/@@download/ENCFF848EEE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF565EAB bed narrowPeak peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489UTO 6283164 ENCODE Processing Pipeline 43bfa55db0f03e753f6485bd40e5e572 https://www.encodeproject.org/files/ENCFF565EAB/@@download/ENCFF565EAB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF942RZC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF848EEE 589606 ENCODE Processing Pipeline 26dfffd59e4783b25c889bd2025ec353 https://www.encodeproject.org/files/ENCFF942RZC/@@download/ENCFF942RZC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF933FYZ bigBed narrowPeak peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF565EAB 11545657 ENCODE Processing Pipeline 333052dbd373b2df5425a2582dfcd5fa https://www.encodeproject.org/files/ENCFF933FYZ/@@download/ENCFF933FYZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF600GZC bigWig signal p-value ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF295NCW, ENCFF418BQZ 1071673885 ENCODE Processing Pipeline 24ed412998b7c559f7b0b3e47274b175 https://www.encodeproject.org/files/ENCFF600GZC/@@download/ENCFF600GZC.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF026FOM bigWig fold change over control ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF295NCW, ENCFF418BQZ 1109386625 ENCODE Processing Pipeline d26847b74d149f3def676439bc5f0c54 https://www.encodeproject.org/files/ENCFF026FOM/@@download/ENCFF026FOM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF850HEX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF086ABE 713723 ENCODE Processing Pipeline 512bdbc1ac492ee36fb5cb69e9b6a558 https://www.encodeproject.org/files/ENCFF850HEX/@@download/ENCFF850HEX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF167UCC bed narrowPeak peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF295NCW, ENCFF418BQZ 6297643 ENCODE Processing Pipeline 76864e59ed124ab4e38fca8465287cc0 https://www.encodeproject.org/files/ENCFF167UCC/@@download/ENCFF167UCC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF319SNK bigBed narrowPeak peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF167UCC 11545605 ENCODE Processing Pipeline b81f9c33e805b76ef3d757efc680c39f https://www.encodeproject.org/files/ENCFF319SNK/@@download/ENCFF319SNK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF086ABE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF167UCC 335794 ENCODE Processing Pipeline e94d0fdbdf0f3140f94120414bc28237 https://www.encodeproject.org/files/ENCFF086ABE/@@download/ENCFF086ABE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF481CKZ fastq reads ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF817NUS 2923487537 Richard Myers, HAIB 5c5b8a7751047276e165625a4dcf9456 SRA:SRR6214337 https://www.encodeproject.org/files/ENCFF481CKZ/@@download/ENCFF481CKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF962ZAE/ released antibody characterized with exemption missing control alignments ENCFF817NUS fastq reads ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF481CKZ 2972443191 Richard Myers, HAIB c6709edd6a2732a2eb9bd9af2abee80d SRA:SRR6214337 https://www.encodeproject.org/files/ENCFF817NUS/@@download/ENCFF817NUS.fastq.gz Illumina HiSeq 2000 /files/ENCFF310JWS/ released antibody characterized with exemption missing control alignments ENCFF650JSX bam unfiltered alignments ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF481CKZ, ENCFF807MUK, ENCFF817NUS 7002005788 ENCODE Processing Pipeline 8f34428c5a4ee713934689aa9fab2901 https://www.encodeproject.org/files/ENCFF650JSX/@@download/ENCFF650JSX.bam hg19 released antibody characterized with exemption missing control alignments ENCFF247QPH bam alignments ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF481CKZ, ENCFF807MUK, ENCFF817NUS 5220567387 ENCODE Processing Pipeline a13d8fe02599f0032c381dd76b3c75f7 https://www.encodeproject.org/files/ENCFF247QPH/@@download/ENCFF247QPH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF047HQY bam alignments ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF481CKZ, ENCFF643CGH, ENCFF817NUS 5228785527 ENCODE Processing Pipeline 71b336f07f6ae55a8848630a0344bf65 https://www.encodeproject.org/files/ENCFF047HQY/@@download/ENCFF047HQY.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF607GXS bam unfiltered alignments ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF481CKZ, ENCFF643CGH, ENCFF817NUS 7034722819 ENCODE Processing Pipeline debd58fb771b8c7b68f5d6db1a701aeb https://www.encodeproject.org/files/ENCFF607GXS/@@download/ENCFF607GXS.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF305JQA bigWig signal p-value ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF047HQY 1377711378 ENCODE Processing Pipeline ff0d326b0d3016e98f47c41dd5838e07 https://www.encodeproject.org/files/ENCFF305JQA/@@download/ENCFF305JQA.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF002XED bigWig fold change over control ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF047HQY 1586959709 ENCODE Processing Pipeline ed9d39802d6f01dc2244370073f0b4e3 https://www.encodeproject.org/files/ENCFF002XED/@@download/ENCFF002XED.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF483STZ bed narrowPeak peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF047HQY 5890414 ENCODE Processing Pipeline 34fcb7afb8c4c1880b80e938c8ed31a3 https://www.encodeproject.org/files/ENCFF483STZ/@@download/ENCFF483STZ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF970SYA bigBed narrowPeak peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF483STZ 11967434 ENCODE Processing Pipeline 681f6ac6eb58f38161b92bda171e8c66 https://www.encodeproject.org/files/ENCFF970SYA/@@download/ENCFF970SYA.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF087RBS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF483STZ 14986 ENCODE Processing Pipeline 373133c8038619a4aa40b373ee2d2038 https://www.encodeproject.org/files/ENCFF087RBS/@@download/ENCFF087RBS.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF459XDP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF087RBS 87916 ENCODE Processing Pipeline d854c96b3321faebf3da713a3b095945 https://www.encodeproject.org/files/ENCFF459XDP/@@download/ENCFF459XDP.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF631VTP bigWig fold change over control ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF247QPH 1541699043 ENCODE Processing Pipeline 292aeb90cae10ee35e73d5ebd8e995a2 https://www.encodeproject.org/files/ENCFF631VTP/@@download/ENCFF631VTP.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF945WSK bigBed narrowPeak peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF042IVB 11945719 ENCODE Processing Pipeline 622f92ffc4eceb25f88ac386ff5e64d3 https://www.encodeproject.org/files/ENCFF945WSK/@@download/ENCFF945WSK.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF302VSW bigWig signal p-value ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF247QPH 1372664771 ENCODE Processing Pipeline 70e770be5f429a55756e65502c146933 https://www.encodeproject.org/files/ENCFF302VSW/@@download/ENCFF302VSW.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF207RWS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF042IVB 14621 ENCODE Processing Pipeline ae9e8cf950011a04de3e6a6f675ae697 https://www.encodeproject.org/files/ENCFF207RWS/@@download/ENCFF207RWS.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF123QQN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF207RWS 85622 ENCODE Processing Pipeline a0caad08952704e8477ed27baf114d13 https://www.encodeproject.org/files/ENCFF123QQN/@@download/ENCFF123QQN.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF042IVB bed narrowPeak peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF247QPH 5882012 ENCODE Processing Pipeline e05bd21083630823c426aa307c5035f7 https://www.encodeproject.org/files/ENCFF042IVB/@@download/ENCFF042IVB.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF426SGY fastq reads ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 1 76 paired-ended 1 ENCFF793WCO 1042712333 Richard Myers, HAIB 6237323edb555872e7b804dfc7098184 https://www.encodeproject.org/files/ENCFF426SGY/@@download/ENCFF426SGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF422VWS/ released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF793WCO fastq reads ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 1 76 paired-ended 2 ENCFF426SGY 1114958504 Richard Myers, HAIB 22f1536f347fcfa24727a92f358815bc https://www.encodeproject.org/files/ENCFF793WCO/@@download/ENCFF793WCO.fastq.gz Illumina HiSeq 2000 /files/ENCFF770ANY/ released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF080SFF bam unfiltered alignments ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 76 ENCFF426SGY, ENCFF793WCO, ENCFF807MUK 2578212036 ENCODE Processing Pipeline 74198b7a861edd979791283163b25b43 https://www.encodeproject.org/files/ENCFF080SFF/@@download/ENCFF080SFF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF999VBZ bam alignments ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 76 ENCFF426SGY, ENCFF793WCO, ENCFF807MUK 1249960372 ENCODE Processing Pipeline e0a6bb007703519c39f3b40fb4477403 https://www.encodeproject.org/files/ENCFF999VBZ/@@download/ENCFF999VBZ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF708LBA bam unfiltered alignments ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 76 ENCFF426SGY, ENCFF643CGH, ENCFF793WCO 2584001011 ENCODE Processing Pipeline f203fd20015103b4262ae83e6fa4229c https://www.encodeproject.org/files/ENCFF708LBA/@@download/ENCFF708LBA.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF618GTD bam alignments ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 76 ENCFF426SGY, ENCFF643CGH, ENCFF793WCO 1249551894 ENCODE Processing Pipeline 3faecaa99b50f0a4114b2c599ca4629e https://www.encodeproject.org/files/ENCFF618GTD/@@download/ENCFF618GTD.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF425ROI bigWig fold change over control ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF262GCW, ENCFF618GTD 704293885 ENCODE Processing Pipeline 80b11cefed1c328f219c15e6b3fdc81b https://www.encodeproject.org/files/ENCFF425ROI/@@download/ENCFF425ROI.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF695DXW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF419RSJ, ENCFF574WKH 578991 ENCODE Processing Pipeline bf3f111751d835ae74e3e8e617a50aa1 https://www.encodeproject.org/files/ENCFF695DXW/@@download/ENCFF695DXW.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF167ZED bigBed narrowPeak peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF574WKH 12804149 ENCODE Processing Pipeline a7cadcce221036c261d94e0f71e1cd64 https://www.encodeproject.org/files/ENCFF167ZED/@@download/ENCFF167ZED.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF902CPV bigWig signal p-value ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF262GCW, ENCFF618GTD 1263915936 ENCODE Processing Pipeline 60642de828669f08f81a2000f44efb8d https://www.encodeproject.org/files/ENCFF902CPV/@@download/ENCFF902CPV.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF574WKH bed narrowPeak peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF262GCW, ENCFF618GTD 6755896 ENCODE Processing Pipeline 90c903d08b2773482ffc78634423b1bb https://www.encodeproject.org/files/ENCFF574WKH/@@download/ENCFF574WKH.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF730MYG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF695DXW 1113609 ENCODE Processing Pipeline cca2ea30702870dda74c3913cafec072 https://www.encodeproject.org/files/ENCFF730MYG/@@download/ENCFF730MYG.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF698JRH bed narrowPeak peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF272ODU, ENCFF999VBZ 6783120 ENCODE Processing Pipeline f533ef94c25c8900ea39f39154424d35 https://www.encodeproject.org/files/ENCFF698JRH/@@download/ENCFF698JRH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF103BMI bigBed narrowPeak peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF698JRH 12826215 ENCODE Processing Pipeline 60d31fb36ae7306ee990eab969fab782 https://www.encodeproject.org/files/ENCFF103BMI/@@download/ENCFF103BMI.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF697APD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF218PDI 1400933 ENCODE Processing Pipeline ba4883b9a54024e2903f61f65ff04530 https://www.encodeproject.org/files/ENCFF697APD/@@download/ENCFF697APD.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF218PDI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF001TDO, ENCFF698JRH 594423 ENCODE Processing Pipeline c7178f0905dcfe770a3914c4e9975c38 https://www.encodeproject.org/files/ENCFF218PDI/@@download/ENCFF218PDI.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF178XZY bigWig fold change over control ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF272ODU, ENCFF999VBZ 688992091 ENCODE Processing Pipeline ac1badae020366560ec2000bbd7f8c3b https://www.encodeproject.org/files/ENCFF178XZY/@@download/ENCFF178XZY.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF323FRD bigWig signal p-value ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF272ODU, ENCFF999VBZ 1218424493 ENCODE Processing Pipeline 82845bab0676ea33be5fcaed565ecd0f https://www.encodeproject.org/files/ENCFF323FRD/@@download/ENCFF323FRD.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF296DPR fastq reads ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 1 50 single-ended 1245481885 Richard Myers, HAIB ff9ab5a35a9948e6812eba0de6c07cb6 SRA:SRR6212924 https://www.encodeproject.org/files/ENCFF296DPR/@@download/ENCFF296DPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, inconsistent control read length, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF656IHM fastq reads ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 1 50 single-ended 928023841 Richard Myers, HAIB 84005dc7217df49670ef14c7b9da6b82 SRA:SRR6212923 https://www.encodeproject.org/files/ENCFF656IHM/@@download/ENCFF656IHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, inconsistent control read length, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF603CIW bam unfiltered alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 50 ENCFF643CGH, ENCFF656IHM 1062769032 ENCODE Processing Pipeline 569f7f71a61e902ed82da75839115762 https://www.encodeproject.org/files/ENCFF603CIW/@@download/ENCFF603CIW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF728SLT bam unfiltered alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 50 ENCFF296DPR, ENCFF643CGH 1407486418 ENCODE Processing Pipeline 5d0f74dfe927c7cc215b1802af4b0fd4 https://www.encodeproject.org/files/ENCFF728SLT/@@download/ENCFF728SLT.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF569SUT bam unfiltered alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 50 ENCFF656IHM, ENCFF807MUK 1059215337 ENCODE Processing Pipeline 82ffa137c8a7b542508e4a695441ff68 https://www.encodeproject.org/files/ENCFF569SUT/@@download/ENCFF569SUT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF127FFH bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 50 ENCFF643CGH, ENCFF656IHM 832241361 ENCODE Processing Pipeline b8380095939caf492e368b4756b49f84 https://www.encodeproject.org/files/ENCFF127FFH/@@download/ENCFF127FFH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF859TFA bam unfiltered alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 50 ENCFF296DPR, ENCFF807MUK 1402533666 ENCODE Processing Pipeline a5c472d0daad7a69492311ce533b1f8e https://www.encodeproject.org/files/ENCFF859TFA/@@download/ENCFF859TFA.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF465AXY bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 50 ENCFF656IHM, ENCFF807MUK 832335548 ENCODE Processing Pipeline 4a80bc8b5ff02918eef6715d0970af03 https://www.encodeproject.org/files/ENCFF465AXY/@@download/ENCFF465AXY.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF919JRJ bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 50 ENCFF296DPR, ENCFF807MUK 1084252405 ENCODE Processing Pipeline b481c04cfdc847ced9ee0a7c8d9a660f https://www.encodeproject.org/files/ENCFF919JRJ/@@download/ENCFF919JRJ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF581GQK bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 50 ENCFF296DPR, ENCFF643CGH 1084142910 ENCODE Processing Pipeline 45ee6ee0aeb9609c714bb06674e34692 https://www.encodeproject.org/files/ENCFF581GQK/@@download/ENCFF581GQK.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF930SDS bigWig signal p-value ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF127FFH 524287239 ENCODE Processing Pipeline b0dbe966de089adb8713baa2af733788 https://www.encodeproject.org/files/ENCFF930SDS/@@download/ENCFF930SDS.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670XWO bigWig fold change over control ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF127FFH 422471558 ENCODE Processing Pipeline 40770755d0bc7237cdb5e3c725ecb402 https://www.encodeproject.org/files/ENCFF670XWO/@@download/ENCFF670XWO.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF197FAS bigWig signal p-value ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF581GQK 532512261 ENCODE Processing Pipeline 34ce56e656b73a3a95469b30db496df4 https://www.encodeproject.org/files/ENCFF197FAS/@@download/ENCFF197FAS.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124BUY bigWig signal p-value ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF127FFH, ENCFF581GQK 646725578 ENCODE Processing Pipeline 59fb3bc7076516437698be7a184ebb58 https://www.encodeproject.org/files/ENCFF124BUY/@@download/ENCFF124BUY.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF864GEM bigWig fold change over control ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF581GQK 508488037 ENCODE Processing Pipeline b1e80e6e843a5a9f907cf2f7632dc64c https://www.encodeproject.org/files/ENCFF864GEM/@@download/ENCFF864GEM.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF296KGM bigWig fold change over control ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF127FFH, ENCFF581GQK 799477470 ENCODE Processing Pipeline 6967139255a4e360f8e3f9f1c85fa9b2 https://www.encodeproject.org/files/ENCFF296KGM/@@download/ENCFF296KGM.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF700XUG bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF127FFH 5928637 ENCODE Processing Pipeline c61d8bad22c9bd49ff3788731c7e948d https://www.encodeproject.org/files/ENCFF700XUG/@@download/ENCFF700XUG.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF755JSV bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF581GQK 6029841 ENCODE Processing Pipeline f0f5f7e98a6e28dd8a90290b192bf58c https://www.encodeproject.org/files/ENCFF755JSV/@@download/ENCFF755JSV.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF471LSV bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF127FFH, ENCFF581GQK 6688821 ENCODE Processing Pipeline 77fcf4d7a13b8e168ac57e9443f5b767 https://www.encodeproject.org/files/ENCFF471LSV/@@download/ENCFF471LSV.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF359STX bigBed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF700XUG 13134284 ENCODE Processing Pipeline 877cbab7aad7b73f861015170bcf171f https://www.encodeproject.org/files/ENCFF359STX/@@download/ENCFF359STX.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616YYQ bigBed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF755JSV 13183949 ENCODE Processing Pipeline e77d35222c1d11ef1a209fb0038d5faa https://www.encodeproject.org/files/ENCFF616YYQ/@@download/ENCFF616YYQ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF799EUB bigBed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF471LSV 13150490 ENCODE Processing Pipeline 5a822bdd50e07a4bf20a5edbe4edcd40 https://www.encodeproject.org/files/ENCFF799EUB/@@download/ENCFF799EUB.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF113GDJ bed narrowPeak conservative idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF471LSV, ENCFF700XUG, ENCFF755JSV 141899 ENCODE Processing Pipeline bfb6d26e637918ab8f6a98a7d8db76e5 https://www.encodeproject.org/files/ENCFF113GDJ/@@download/ENCFF113GDJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF573WGP bigBed narrowPeak conservative idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF113GDJ 302404 ENCODE Processing Pipeline 9faa475eb0def428dcfdd9ea7f52c961 https://www.encodeproject.org/files/ENCFF573WGP/@@download/ENCFF573WGP.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF845MDX bed narrowPeak optimal idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF471LSV, ENCFF700XUG, ENCFF755JSV 161009 ENCODE Processing Pipeline 4d315e2072da9802cc808fd975de19f1 https://www.encodeproject.org/files/ENCFF845MDX/@@download/ENCFF845MDX.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF934ZLO bigBed narrowPeak optimal idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF845MDX 329400 ENCODE Processing Pipeline 8c54be8ebecce9f27511158ef4a22ecd https://www.encodeproject.org/files/ENCFF934ZLO/@@download/ENCFF934ZLO.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF336PWR bigWig fold change over control ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF465AXY, ENCFF919JRJ 787560639 ENCODE Processing Pipeline ee4659a56def9a3cf85130747b29d202 https://www.encodeproject.org/files/ENCFF336PWR/@@download/ENCFF336PWR.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF363YVH bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF465AXY 5932161 ENCODE Processing Pipeline ab7e414613dcace052d721b2ffdde662 https://www.encodeproject.org/files/ENCFF363YVH/@@download/ENCFF363YVH.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF103OKZ bigWig fold change over control ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF465AXY 410514944 ENCODE Processing Pipeline 54c9693340c0034f6b95d4aaabe782b4 https://www.encodeproject.org/files/ENCFF103OKZ/@@download/ENCFF103OKZ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF393KLI bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF465AXY, ENCFF919JRJ 6731966 ENCODE Processing Pipeline 694d08c68a714f0aa07cc9af0fd9d6cc https://www.encodeproject.org/files/ENCFF393KLI/@@download/ENCFF393KLI.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF202EIZ bigBed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF642EEJ 13142874 ENCODE Processing Pipeline 3d901206f6074e2263990848fc4ae4b1 https://www.encodeproject.org/files/ENCFF202EIZ/@@download/ENCFF202EIZ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF868KNP bigBed narrowPeak optimal idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF609WOU 327086 ENCODE Processing Pipeline 4ed9c7d6e2c4b410805d993fd2a25808 https://www.encodeproject.org/files/ENCFF868KNP/@@download/ENCFF868KNP.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF223SET bigWig signal p-value ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF465AXY 512061831 ENCODE Processing Pipeline ed25c6e93f882f37cde77c89980e711f https://www.encodeproject.org/files/ENCFF223SET/@@download/ENCFF223SET.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF903EDA bigBed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF393KLI 13134230 ENCODE Processing Pipeline 6f05ebc6517177ff603b43900f70fc02 https://www.encodeproject.org/files/ENCFF903EDA/@@download/ENCFF903EDA.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF290GSN bigWig signal p-value ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF465AXY, ENCFF919JRJ 637442285 ENCODE Processing Pipeline 4c91960d66d07deec83323bac61bf70a https://www.encodeproject.org/files/ENCFF290GSN/@@download/ENCFF290GSN.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927XWS bigBed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF363YVH 13135076 ENCODE Processing Pipeline 0d5ccc71b6903dd00db5906400585550 https://www.encodeproject.org/files/ENCFF927XWS/@@download/ENCFF927XWS.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF609WOU bed narrowPeak optimal idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF001TDO, ENCFF363YVH, ENCFF393KLI, ENCFF642EEJ 159675 ENCODE Processing Pipeline 03c98b7c4b415a53bd0155369a2c64a3 https://www.encodeproject.org/files/ENCFF609WOU/@@download/ENCFF609WOU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF948SBT bigWig signal p-value ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF919JRJ 522387847 ENCODE Processing Pipeline 0694fed92eeb5a77c02b25d7894bf0ef https://www.encodeproject.org/files/ENCFF948SBT/@@download/ENCFF948SBT.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF134SIP bigWig fold change over control ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF919JRJ 498611710 ENCODE Processing Pipeline 7bf75e2c1964d8b5d62c74a51e7c8acb https://www.encodeproject.org/files/ENCFF134SIP/@@download/ENCFF134SIP.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF815VNN bed narrowPeak conservative idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF001TDO, ENCFF363YVH, ENCFF393KLI, ENCFF642EEJ 141252 ENCODE Processing Pipeline 32bcf4a6b1af123ba12259ac55d503a0 https://www.encodeproject.org/files/ENCFF815VNN/@@download/ENCFF815VNN.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF437JGO bigBed narrowPeak conservative idr thresholded peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1, 2 ENCFF815VNN 299932 ENCODE Processing Pipeline 15702ebaee115b0c1d23f733cd26a7b3 https://www.encodeproject.org/files/ENCFF437JGO/@@download/ENCFF437JGO.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF642EEJ bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF919JRJ 5986896 ENCODE Processing Pipeline 9f7a2a771c19c79799faaf794076b3d0 https://www.encodeproject.org/files/ENCFF642EEJ/@@download/ENCFF642EEJ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF105YMT bam unfiltered alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF611YHU, ENCFF681FMI, ENCFF807MUK 7590244502 ENCODE Processing Pipeline 94a6095754d1589bc04761f56f0f68ee https://www.encodeproject.org/files/ENCFF105YMT/@@download/ENCFF105YMT.bam hg19 released antibody characterized with exemption ENCFF456EQE bam unfiltered alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF112QGY, ENCFF659TEJ, ENCFF807MUK 7408147982 ENCODE Processing Pipeline 5fdb81a995c97f99ce90af71274bd648 https://www.encodeproject.org/files/ENCFF456EQE/@@download/ENCFF456EQE.bam hg19 released antibody characterized with exemption ENCFF112QGY fastq reads ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF659TEJ 3375861235 Michael Snyder, Stanford 11290468a9880713d61240bd16409c8d SRA:SRR5112113 https://www.encodeproject.org/files/ENCFF112QGY/@@download/ENCFF112QGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released antibody characterized with exemption ENCFF659TEJ fastq reads ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF112QGY 3412416242 Michael Snyder, Stanford 387ab494b641e3b77a4243eb9c4c5571 SRA:SRR5112113 https://www.encodeproject.org/files/ENCFF659TEJ/@@download/ENCFF659TEJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released antibody characterized with exemption ENCFF611YHU fastq reads ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF681FMI 3452976616 Michael Snyder, Stanford fe7a04903bb5fce10826031a9b2c2463 SRA:SRR5112114 https://www.encodeproject.org/files/ENCFF611YHU/@@download/ENCFF611YHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released antibody characterized with exemption ENCFF681FMI fastq reads ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF611YHU 3496625619 Michael Snyder, Stanford ca55183a6e0f3abc1c58be994c7b8693 SRA:SRR5112114 https://www.encodeproject.org/files/ENCFF681FMI/@@download/ENCFF681FMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released antibody characterized with exemption ENCFF822QTV bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF112QGY, ENCFF659TEJ, ENCFF807MUK 5822243644 ENCODE Processing Pipeline 3d370aea471b7c9c6e446469c11fffd4 https://www.encodeproject.org/files/ENCFF822QTV/@@download/ENCFF822QTV.bam hg19 released antibody characterized with exemption ENCFF449XWV bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF611YHU, ENCFF681FMI, ENCFF807MUK 6031529323 ENCODE Processing Pipeline 20fda19a6fa05dcfc41e0b184fac76fa https://www.encodeproject.org/files/ENCFF449XWV/@@download/ENCFF449XWV.bam hg19 released antibody characterized with exemption ENCFF120VFT bigWig signal p-value ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF449NNE, ENCFF449XWV 1220689602 ENCODE Processing Pipeline 4c5e698dfa4752b9185b858812ad30dc https://www.encodeproject.org/files/ENCFF120VFT/@@download/ENCFF120VFT.bigWig hg19 released antibody characterized with exemption ENCFF327AAJ bigWig signal p-value ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF822QTV, ENCFF999EQI 1225879665 ENCODE Processing Pipeline 262e0b5f81c3236a3408080e1f162ed6 https://www.encodeproject.org/files/ENCFF327AAJ/@@download/ENCFF327AAJ.bigWig hg19 released antibody characterized with exemption ENCFF971XGI bigWig signal p-value ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF449NNE, ENCFF449XWV, ENCFF822QTV, ENCFF999EQI 1911734077 ENCODE Processing Pipeline e415b804ea770f41d93472eee46d4c7f https://www.encodeproject.org/files/ENCFF971XGI/@@download/ENCFF971XGI.bigWig hg19 released antibody characterized with exemption ENCFF393ZYP bigWig fold change over control ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF449NNE, ENCFF449XWV 1392697449 ENCODE Processing Pipeline 2ba0c7ee66a098a6de3eca99bca242d5 https://www.encodeproject.org/files/ENCFF393ZYP/@@download/ENCFF393ZYP.bigWig hg19 released antibody characterized with exemption ENCFF480LNA bigWig fold change over control ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF822QTV, ENCFF999EQI 1205884393 ENCODE Processing Pipeline 78d92794ddbab53aa4e54bc4718f4fcf https://www.encodeproject.org/files/ENCFF480LNA/@@download/ENCFF480LNA.bigWig hg19 released antibody characterized with exemption ENCFF681OZI bigWig fold change over control ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF449NNE, ENCFF449XWV, ENCFF822QTV, ENCFF999EQI 2246286000 ENCODE Processing Pipeline 47ab68b0469663cb3429b5906fcb5d61 https://www.encodeproject.org/files/ENCFF681OZI/@@download/ENCFF681OZI.bigWig hg19 released antibody characterized with exemption ENCFF527RBD bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF449NNE, ENCFF449XWV 6353137 ENCODE Processing Pipeline f1e171f6771702c5c096fcc70a65600a https://www.encodeproject.org/files/ENCFF527RBD/@@download/ENCFF527RBD.bed.gz hg19 released antibody characterized with exemption ENCFF674AYU bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF822QTV, ENCFF999EQI 6306629 ENCODE Processing Pipeline 9a7d70950ca0f45844d3e13316b55692 https://www.encodeproject.org/files/ENCFF674AYU/@@download/ENCFF674AYU.bed.gz hg19 released antibody characterized with exemption ENCFF716TQR bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF449NNE, ENCFF449XWV, ENCFF822QTV, ENCFF999EQI 7210716 ENCODE Processing Pipeline 8dbc620b4a59bed3377993647e1aed9c https://www.encodeproject.org/files/ENCFF716TQR/@@download/ENCFF716TQR.bed.gz hg19 released antibody characterized with exemption ENCFF474ZCQ bigBed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF527RBD 11310349 ENCODE Processing Pipeline f6d8daf7b33e01624096440e2892642f https://www.encodeproject.org/files/ENCFF474ZCQ/@@download/ENCFF474ZCQ.bigBed hg19 released antibody characterized with exemption ENCFF005MLF bigBed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF716TQR 11401508 ENCODE Processing Pipeline 9f1b69799f9aeb002679f6475ff0a68f https://www.encodeproject.org/files/ENCFF005MLF/@@download/ENCFF005MLF.bigBed hg19 released antibody characterized with exemption ENCFF480MDK bigBed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF674AYU 11425690 ENCODE Processing Pipeline 9546def9fcbfc99e32daa615c31719ee https://www.encodeproject.org/files/ENCFF480MDK/@@download/ENCFF480MDK.bigBed hg19 released antibody characterized with exemption ENCFF966RLB bigBed narrowPeak conservative idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF566DXN 158620 ENCODE Processing Pipeline 5369ed668177bf1a757f395bf1db76dd https://www.encodeproject.org/files/ENCFF966RLB/@@download/ENCFF966RLB.bigBed hg19 released antibody characterized with exemption ENCFF566DXN bed narrowPeak conservative idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF527RBD, ENCFF674AYU, ENCFF716TQR 53251 ENCODE Processing Pipeline 76776cbcc272aff1bda84cabbe990918 https://www.encodeproject.org/files/ENCFF566DXN/@@download/ENCFF566DXN.bed.gz hg19 released antibody characterized with exemption ENCFF920LEU bed narrowPeak optimal idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF527RBD, ENCFF674AYU, ENCFF716TQR 88695 ENCODE Processing Pipeline 3294d59a75115ea2e7bba0de196a9231 https://www.encodeproject.org/files/ENCFF920LEU/@@download/ENCFF920LEU.bed.gz hg19 released antibody characterized with exemption ENCFF581NSG bigBed narrowPeak optimal idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF920LEU 218364 ENCODE Processing Pipeline 7914e484f18257c4f0bd5b3d724b0271 https://www.encodeproject.org/files/ENCFF581NSG/@@download/ENCFF581NSG.bigBed hg19 released antibody characterized with exemption ENCFF025KYQ bam unfiltered alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF112QGY, ENCFF643CGH, ENCFF659TEJ 7419263882 ENCODE Processing Pipeline 32dd4c7dbf27975dc8c19eaca9f2d62d https://www.encodeproject.org/files/ENCFF025KYQ/@@download/ENCFF025KYQ.bam GRCh38 released antibody characterized with exemption ENCFF169IAY bam unfiltered alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF611YHU, ENCFF643CGH, ENCFF681FMI 7603560601 ENCODE Processing Pipeline 85e9c66ccabb9c494138baf08a640f4f https://www.encodeproject.org/files/ENCFF169IAY/@@download/ENCFF169IAY.bam GRCh38 released antibody characterized with exemption ENCFF687IOA bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF112QGY, ENCFF643CGH, ENCFF659TEJ 5840169144 ENCODE Processing Pipeline d2484a5ee05aebf0436b47b850ba182c https://www.encodeproject.org/files/ENCFF687IOA/@@download/ENCFF687IOA.bam GRCh38 released antibody characterized with exemption ENCFF973ZYR bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF611YHU, ENCFF643CGH, ENCFF681FMI 6052121803 ENCODE Processing Pipeline 3706e80bbbd1ce4a87314aebd9ceecc4 https://www.encodeproject.org/files/ENCFF973ZYR/@@download/ENCFF973ZYR.bam GRCh38 released antibody characterized with exemption ENCFF584CCH bigWig signal p-value ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF190EPQ, ENCFF973ZYR 1299599975 ENCODE Processing Pipeline 835a0e4755f2496cbee1e6b6a3a82964 https://www.encodeproject.org/files/ENCFF584CCH/@@download/ENCFF584CCH.bigWig GRCh38 released antibody characterized with exemption ENCFF920EDS bigWig signal p-value ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF687IOA, ENCFF950AXC 1213720496 ENCODE Processing Pipeline d41e97880ccd34be7c4226ca1fe03d7c https://www.encodeproject.org/files/ENCFF920EDS/@@download/ENCFF920EDS.bigWig GRCh38 released antibody characterized with exemption ENCFF889ATT bigWig signal p-value ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF687IOA, ENCFF950AXC, ENCFF973ZYR 1923107539 ENCODE Processing Pipeline e8a0c7e67716eb2099195839303a2a1c https://www.encodeproject.org/files/ENCFF889ATT/@@download/ENCFF889ATT.bigWig GRCh38 released antibody characterized with exemption ENCFF883HDW bigWig fold change over control ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF190EPQ, ENCFF973ZYR 1381838508 ENCODE Processing Pipeline 1e36e92110b9ea1203986db55c2d0948 https://www.encodeproject.org/files/ENCFF883HDW/@@download/ENCFF883HDW.bigWig GRCh38 released antibody characterized with exemption ENCFF564YDQ bigWig fold change over control ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF687IOA, ENCFF950AXC 1208758239 ENCODE Processing Pipeline bdf6266adbcd1dab1c114478f3557fe0 https://www.encodeproject.org/files/ENCFF564YDQ/@@download/ENCFF564YDQ.bigWig GRCh38 released antibody characterized with exemption ENCFF864YCT bigWig fold change over control ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF687IOA, ENCFF950AXC, ENCFF973ZYR 2250527454 ENCODE Processing Pipeline 1f2a6cbda072750c3392b7504e415fc2 https://www.encodeproject.org/files/ENCFF864YCT/@@download/ENCFF864YCT.bigWig GRCh38 released antibody characterized with exemption ENCFF679XOT bigBed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF351DID 11417942 ENCODE Processing Pipeline 0623c1328b2ff904998ae8d8b98cbaf3 https://www.encodeproject.org/files/ENCFF679XOT/@@download/ENCFF679XOT.bigBed GRCh38 released antibody characterized with exemption ENCFF466SJG bigBed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF042FXY 11419199 ENCODE Processing Pipeline c334403a7f547e1465a848ce1e364702 https://www.encodeproject.org/files/ENCFF466SJG/@@download/ENCFF466SJG.bigBed GRCh38 released antibody characterized with exemption ENCFF717KIQ bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF190EPQ, ENCFF973ZYR 6201899 ENCODE Processing Pipeline 282b3633841b09b2cbe9082a3224bb80 https://www.encodeproject.org/files/ENCFF717KIQ/@@download/ENCFF717KIQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF351DID bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF687IOA, ENCFF950AXC 6154340 ENCODE Processing Pipeline f9bd0f60c8e0af17cca4163c2fc45425 https://www.encodeproject.org/files/ENCFF351DID/@@download/ENCFF351DID.bed.gz GRCh38 released antibody characterized with exemption ENCFF042FXY bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF687IOA, ENCFF950AXC, ENCFF973ZYR 7133511 ENCODE Processing Pipeline 54fcff6a0b2b939a406f9095f6a04841 https://www.encodeproject.org/files/ENCFF042FXY/@@download/ENCFF042FXY.bed.gz GRCh38 released antibody characterized with exemption ENCFF084JMZ bigBed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF717KIQ 11331753 ENCODE Processing Pipeline 9dbf1632f25a7dfbb30ef6391ed7b7b1 https://www.encodeproject.org/files/ENCFF084JMZ/@@download/ENCFF084JMZ.bigBed GRCh38 released antibody characterized with exemption ENCFF106YYN bed narrowPeak conservative idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF042FXY, ENCFF351DID, ENCFF419RSJ, ENCFF717KIQ 60210 ENCODE Processing Pipeline c67c95c308ec04089f67400b647f5b75 https://www.encodeproject.org/files/ENCFF106YYN/@@download/ENCFF106YYN.bed.gz GRCh38 released antibody characterized with exemption ENCFF494VUE bigBed narrowPeak conservative idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF106YYN 173592 ENCODE Processing Pipeline ea245b0ffac5a2355e2eb720ca8f1beb https://www.encodeproject.org/files/ENCFF494VUE/@@download/ENCFF494VUE.bigBed GRCh38 released antibody characterized with exemption ENCFF332FUE bed narrowPeak optimal idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF042FXY, ENCFF351DID, ENCFF419RSJ, ENCFF717KIQ 92457 ENCODE Processing Pipeline 33bf0efe3d0d2d15b20ba97f4ea896e1 https://www.encodeproject.org/files/ENCFF332FUE/@@download/ENCFF332FUE.bed.gz GRCh38 released antibody characterized with exemption ENCFF092BTY bigBed narrowPeak optimal idr thresholded peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF332FUE 229261 ENCODE Processing Pipeline 2c55de8b37ab7d7122d74b2666a52de7 https://www.encodeproject.org/files/ENCFF092BTY/@@download/ENCFF092BTY.bigBed GRCh38 released antibody characterized with exemption ENCFF380TFO fastq reads ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2540214411 Richard Myers, HAIB f18bcbd29c677af858e3300340b0db52 SRA:SRR5331637 https://www.encodeproject.org/files/ENCFF380TFO/@@download/ENCFF380TFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF264ZXH fastq reads ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2196984044 Richard Myers, HAIB 35da080362ec48d140be925ba00643de SRA:SRR5331636 https://www.encodeproject.org/files/ENCFF264ZXH/@@download/ENCFF264ZXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF102DQG bam unfiltered alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 76 ENCFF264ZXH, ENCFF643CGH 2488163071 ENCODE Processing Pipeline 557d3340f57d02f82566523fb230f950 https://www.encodeproject.org/files/ENCFF102DQG/@@download/ENCFF102DQG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425CBA bam unfiltered alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 76 ENCFF380TFO, ENCFF643CGH 2923182793 ENCODE Processing Pipeline 3f0416ea460a379ab96be525795f25ad https://www.encodeproject.org/files/ENCFF425CBA/@@download/ENCFF425CBA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF994SGQ bam unfiltered alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 76 ENCFF264ZXH, ENCFF807MUK 2483849634 ENCODE Processing Pipeline 7bfdd27f32ef2993baabadb18ff232b3 https://www.encodeproject.org/files/ENCFF994SGQ/@@download/ENCFF994SGQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF290AKY bam unfiltered alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 76 ENCFF380TFO, ENCFF807MUK 2916227602 ENCODE Processing Pipeline 94c656d302122c9acec1d0f2a49f91ef https://www.encodeproject.org/files/ENCFF290AKY/@@download/ENCFF290AKY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF236OFH bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 76 ENCFF264ZXH, ENCFF643CGH 1785791743 ENCODE Processing Pipeline 26800f547d97e1ff04ea33c505ba5f93 https://www.encodeproject.org/files/ENCFF236OFH/@@download/ENCFF236OFH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF237AJA bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 76 ENCFF264ZXH, ENCFF807MUK 1785274481 ENCODE Processing Pipeline 4dc55f67d92abac8d0ee133e18b8fdd1 https://www.encodeproject.org/files/ENCFF237AJA/@@download/ENCFF237AJA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF749BIB bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 76 ENCFF380TFO, ENCFF643CGH 2207213443 ENCODE Processing Pipeline 6f0e88429c6a7280a7d3be0ecd024a4b https://www.encodeproject.org/files/ENCFF749BIB/@@download/ENCFF749BIB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF836CXT bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 76 ENCFF380TFO, ENCFF807MUK 2206022316 ENCODE Processing Pipeline c3f768626a4152e7e6d1113a5edb2be6 https://www.encodeproject.org/files/ENCFF836CXT/@@download/ENCFF836CXT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF820QIW bigWig signal p-value ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF749BIB 644701632 ENCODE Processing Pipeline 65df202e7140e121932f485400255478 https://www.encodeproject.org/files/ENCFF820QIW/@@download/ENCFF820QIW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF302KTT bigWig signal p-value ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF236OFH 625375986 ENCODE Processing Pipeline 2524ae3d9af87445c9105feed7b1ba03 https://www.encodeproject.org/files/ENCFF302KTT/@@download/ENCFF302KTT.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF109CEK bigWig signal p-value ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF236OFH, ENCFF749BIB 623724727 ENCODE Processing Pipeline a59b73cce74ca3694dc17b120b3183b4 https://www.encodeproject.org/files/ENCFF109CEK/@@download/ENCFF109CEK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF910KZX bigWig fold change over control ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF749BIB 716098547 ENCODE Processing Pipeline 3e4a7a03d651d77912eaecf3307f42ae https://www.encodeproject.org/files/ENCFF910KZX/@@download/ENCFF910KZX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF345XYN bigWig fold change over control ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF236OFH 612242888 ENCODE Processing Pipeline 120661fe8510eca2df7d7497fddea8a1 https://www.encodeproject.org/files/ENCFF345XYN/@@download/ENCFF345XYN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF529XBR bigWig fold change over control ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF236OFH, ENCFF749BIB 1093864989 ENCODE Processing Pipeline c2acb6580846de1dd4d83c0f0c4c153f https://www.encodeproject.org/files/ENCFF529XBR/@@download/ENCFF529XBR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF071HQX bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF749BIB 6690019 ENCODE Processing Pipeline 6844b04814816b9f91f99b14bef918f3 https://www.encodeproject.org/files/ENCFF071HQX/@@download/ENCFF071HQX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF496SIC bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF236OFH 6844729 ENCODE Processing Pipeline 6cd13527c246d66d22b5a4ad1af1b8d9 https://www.encodeproject.org/files/ENCFF496SIC/@@download/ENCFF496SIC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF583QBZ bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF236OFH, ENCFF749BIB 7158002 ENCODE Processing Pipeline 37828fd4f305d99d17a14ac21f15a9b8 https://www.encodeproject.org/files/ENCFF583QBZ/@@download/ENCFF583QBZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF038FHK bigBed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF071HQX 12946259 ENCODE Processing Pipeline 09db9680dfc9ee24bf6ee6bd75a6e014 https://www.encodeproject.org/files/ENCFF038FHK/@@download/ENCFF038FHK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF095RRH bigBed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF496SIC 12704949 ENCODE Processing Pipeline 9a3905d259ce76c75a60473ec32a3d80 https://www.encodeproject.org/files/ENCFF095RRH/@@download/ENCFF095RRH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF906DVM bigBed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF583QBZ 12750470 ENCODE Processing Pipeline 3a7faae186e41e8dd8e65aa7fd200549 https://www.encodeproject.org/files/ENCFF906DVM/@@download/ENCFF906DVM.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF418KCB bed narrowPeak conservative idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF071HQX, ENCFF419RSJ, ENCFF496SIC, ENCFF583QBZ 508977 ENCODE Processing Pipeline cdfb01ff62702fa371e230dc68e96a3a https://www.encodeproject.org/files/ENCFF418KCB/@@download/ENCFF418KCB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF344PJS bed narrowPeak optimal idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF071HQX, ENCFF419RSJ, ENCFF496SIC, ENCFF583QBZ 537587 ENCODE Processing Pipeline e4b4a7ad17242b7ff3eb6f37befb8dc1 https://www.encodeproject.org/files/ENCFF344PJS/@@download/ENCFF344PJS.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF902UYF bigBed narrowPeak conservative idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF418KCB 937912 ENCODE Processing Pipeline 63521369330da03860b8ebcfb852b7d8 https://www.encodeproject.org/files/ENCFF902UYF/@@download/ENCFF902UYF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF258PTZ bigBed narrowPeak optimal idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF344PJS 1184590 ENCODE Processing Pipeline ef8eedf12cdbb2581399563062ad4a9c https://www.encodeproject.org/files/ENCFF258PTZ/@@download/ENCFF258PTZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF564TCE bigWig signal p-value ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF836CXT 1350594418 ENCODE Processing Pipeline 9ad8dd3b6fbc87409bd44e39e8e2728e https://www.encodeproject.org/files/ENCFF564TCE/@@download/ENCFF564TCE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF473JTW bigWig signal p-value ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF237AJA 1382922774 ENCODE Processing Pipeline 58b65989c69966f71bdfc163d1e66af6 https://www.encodeproject.org/files/ENCFF473JTW/@@download/ENCFF473JTW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935ROF bigWig signal p-value ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF237AJA, ENCFF836CXT 1646571907 ENCODE Processing Pipeline b2ff37f9e39c819ac96a0e11e029452e https://www.encodeproject.org/files/ENCFF935ROF/@@download/ENCFF935ROF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF700WRI bigWig fold change over control ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF836CXT 1311124468 ENCODE Processing Pipeline e7cab7f7b7ae243067063aa76ce521bf https://www.encodeproject.org/files/ENCFF700WRI/@@download/ENCFF700WRI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF727AGN bigWig fold change over control ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF237AJA 1175414688 ENCODE Processing Pipeline 866e4a1075512d5bc1926fcf1d1a63f4 https://www.encodeproject.org/files/ENCFF727AGN/@@download/ENCFF727AGN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF429LCD bigWig fold change over control ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF237AJA, ENCFF836CXT 1773879569 ENCODE Processing Pipeline 734ad6909ff82ecd0475b03e0a58cab7 https://www.encodeproject.org/files/ENCFF429LCD/@@download/ENCFF429LCD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF318GTI bigBed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF141OZE 12986142 ENCODE Processing Pipeline 071c7f83c055e5a143bf03902e5da4ba https://www.encodeproject.org/files/ENCFF318GTI/@@download/ENCFF318GTI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF141OZE bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF836CXT 7128683 ENCODE Processing Pipeline c3049369dc3e072deefb6f67ea51bacc https://www.encodeproject.org/files/ENCFF141OZE/@@download/ENCFF141OZE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261JCG bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF237AJA, ENCFF836CXT 7265713 ENCODE Processing Pipeline 7cd6688c366135d81b26f3260734e698 https://www.encodeproject.org/files/ENCFF261JCG/@@download/ENCFF261JCG.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649DTF bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF237AJA 7159985 ENCODE Processing Pipeline 10c5e7198e03e2408ad159610e2ed94e https://www.encodeproject.org/files/ENCFF649DTF/@@download/ENCFF649DTF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178HUM bigBed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF649DTF 12815405 ENCODE Processing Pipeline 703b16aaa5fb99e39806c92fa6ea3976 https://www.encodeproject.org/files/ENCFF178HUM/@@download/ENCFF178HUM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683KGR bigBed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF261JCG 12811072 ENCODE Processing Pipeline bd50360c3b2ebcd31a7a5ac48e716ea9 https://www.encodeproject.org/files/ENCFF683KGR/@@download/ENCFF683KGR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF317DRJ bed narrowPeak conservative idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF141OZE, ENCFF261JCG, ENCFF649DTF 553539 ENCODE Processing Pipeline 7d5e6fbde8fe4565c3f4aaa4ccdefa7c https://www.encodeproject.org/files/ENCFF317DRJ/@@download/ENCFF317DRJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF776BWX bed narrowPeak optimal idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF141OZE, ENCFF261JCG, ENCFF649DTF 560467 ENCODE Processing Pipeline 422806e8b5cdb93aa6017a33d6d92015 https://www.encodeproject.org/files/ENCFF776BWX/@@download/ENCFF776BWX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF439SIR bigBed narrowPeak conservative idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317DRJ 1305139 ENCODE Processing Pipeline 7d09c7da6ecc5f5e1b3f60b105b35bbf https://www.encodeproject.org/files/ENCFF439SIR/@@download/ENCFF439SIR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF381JUX bigBed narrowPeak optimal idr thresholded peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF776BWX 1319744 ENCODE Processing Pipeline 5f02e3f7f09d99447410623475add822 https://www.encodeproject.org/files/ENCFF381JUX/@@download/ENCFF381JUX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF492AMG bam unfiltered alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF565KLI, ENCFF682IGK, ENCFF807MUK 5477981809 ENCODE Processing Pipeline 9698808c78a80f9f04b48af864d377a3 https://www.encodeproject.org/files/ENCFF492AMG/@@download/ENCFF492AMG.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF389CSQ bam unfiltered alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF069VNL, ENCFF081USS, ENCFF807MUK 4348682310 ENCODE Processing Pipeline 4e709c18caf9e3af887b2358db3d18a7 https://www.encodeproject.org/files/ENCFF389CSQ/@@download/ENCFF389CSQ.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF069VNL fastq reads ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF081USS 2061983801 Michael Snyder, Stanford 1dab4e0806e875b2d9238a7b72636eab https://www.encodeproject.org/files/ENCFF069VNL/@@download/ENCFF069VNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF682IGK fastq reads ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF565KLI 2622885479 Michael Snyder, Stanford 9cf6f5269f81a8261b9076667b8d943b https://www.encodeproject.org/files/ENCFF682IGK/@@download/ENCFF682IGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF081USS fastq reads ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF069VNL 2034930251 Michael Snyder, Stanford f42fe9495ac96c5cfc572c0acae7ccab https://www.encodeproject.org/files/ENCFF081USS/@@download/ENCFF081USS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF565KLI fastq reads ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF682IGK 2552386998 Michael Snyder, Stanford e96488cf3d55f7bdaa12ab3e18f76618 https://www.encodeproject.org/files/ENCFF565KLI/@@download/ENCFF565KLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF676XEB bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF069VNL, ENCFF081USS, ENCFF807MUK 3466917795 ENCODE Processing Pipeline 7530e3493612f61ed9124341fb8d4702 https://www.encodeproject.org/files/ENCFF676XEB/@@download/ENCFF676XEB.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF258YDE bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF565KLI, ENCFF682IGK, ENCFF807MUK 4213726636 ENCODE Processing Pipeline e88dc849eb900bdefec4cfecf711cf13 https://www.encodeproject.org/files/ENCFF258YDE/@@download/ENCFF258YDE.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF111CNS bigWig signal p-value ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF258YDE, ENCFF581ZJL, ENCFF676XEB 1843905192 ENCODE Processing Pipeline 5497e0a7361d320b33ef614fe90dc5d0 https://www.encodeproject.org/files/ENCFF111CNS/@@download/ENCFF111CNS.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF703NOB bigWig fold change over control ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF258YDE, ENCFF581ZJL, ENCFF676XEB 2001536299 ENCODE Processing Pipeline 27147a897083d2024b6e46b786fca5b9 https://www.encodeproject.org/files/ENCFF703NOB/@@download/ENCFF703NOB.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF552SPI bam unfiltered alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF069VNL, ENCFF081USS, ENCFF643CGH 4352236082 ENCODE Processing Pipeline 9ce38d4fb6860565a70faacc06f21d02 https://www.encodeproject.org/files/ENCFF552SPI/@@download/ENCFF552SPI.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF933IST bam unfiltered alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF565KLI, ENCFF643CGH, ENCFF682IGK 5481518458 ENCODE Processing Pipeline e41e47e8d542b4e6624ad10d45b48810 https://www.encodeproject.org/files/ENCFF933IST/@@download/ENCFF933IST.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF102VJO bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF069VNL, ENCFF081USS, ENCFF643CGH 3468020208 ENCODE Processing Pipeline 2ab83cc5862ce5f119281fc4cb974ec8 https://www.encodeproject.org/files/ENCFF102VJO/@@download/ENCFF102VJO.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF313JTU bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF565KLI, ENCFF643CGH, ENCFF682IGK 4214753889 ENCODE Processing Pipeline c3141d62197520a97ef4757b432fc9bd https://www.encodeproject.org/files/ENCFF313JTU/@@download/ENCFF313JTU.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF484GNY bigWig signal p-value ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF102VJO, ENCFF910IKB 1156537506 ENCODE Processing Pipeline 3ede18a5c544d8f90854898ef6a93008 https://www.encodeproject.org/files/ENCFF484GNY/@@download/ENCFF484GNY.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF742FPU bigWig signal p-value ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF313JTU 1009333078 ENCODE Processing Pipeline d58d8d88fcc9c3257b1a658c5bb98ab4 https://www.encodeproject.org/files/ENCFF742FPU/@@download/ENCFF742FPU.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF560GZS bigWig signal p-value ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF102VJO, ENCFF227IZS, ENCFF313JTU, ENCFF910IKB 1584673058 ENCODE Processing Pipeline 12ae45915ca9e21af23bb400948275a0 https://www.encodeproject.org/files/ENCFF560GZS/@@download/ENCFF560GZS.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF195CWQ bigWig fold change over control ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF102VJO, ENCFF910IKB 1071459139 ENCODE Processing Pipeline e3b8e2f84e30d35aec6b1c3033d13b79 https://www.encodeproject.org/files/ENCFF195CWQ/@@download/ENCFF195CWQ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF509CGW bigWig fold change over control ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF313JTU 1118611874 ENCODE Processing Pipeline f3a75f8ae41413661e2fe2577c103312 https://www.encodeproject.org/files/ENCFF509CGW/@@download/ENCFF509CGW.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF308UOK bigWig fold change over control ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF102VJO, ENCFF227IZS, ENCFF313JTU, ENCFF910IKB 2001931028 ENCODE Processing Pipeline 3b398203d27b760fba28a1799355a9b7 https://www.encodeproject.org/files/ENCFF308UOK/@@download/ENCFF308UOK.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF872NFM bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF102VJO, ENCFF910IKB 6732632 ENCODE Processing Pipeline c4d1b882f3b78a9750ed95bc919e74c8 https://www.encodeproject.org/files/ENCFF872NFM/@@download/ENCFF872NFM.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF827GWN bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF313JTU 6985590 ENCODE Processing Pipeline dce69541ea66280103054d87e829963e https://www.encodeproject.org/files/ENCFF827GWN/@@download/ENCFF827GWN.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF271QTZ bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF102VJO, ENCFF227IZS, ENCFF313JTU, ENCFF910IKB 7245087 ENCODE Processing Pipeline a329607dcb29ab32abada97e7b83820c https://www.encodeproject.org/files/ENCFF271QTZ/@@download/ENCFF271QTZ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF903FJS bigBed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF872NFM 13612340 ENCODE Processing Pipeline d10ce4f2d757eea923b1eabbd4ad0049 https://www.encodeproject.org/files/ENCFF903FJS/@@download/ENCFF903FJS.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF806FBL bigBed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF827GWN 13353680 ENCODE Processing Pipeline fc2a90b511166c92812f580f8e792f91 https://www.encodeproject.org/files/ENCFF806FBL/@@download/ENCFF806FBL.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF336QRA bigBed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF271QTZ 13628042 ENCODE Processing Pipeline 0aaf6159738239c4760c94f1c62ae465 https://www.encodeproject.org/files/ENCFF336QRA/@@download/ENCFF336QRA.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF771LVW bed narrowPeak conservative idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF271QTZ, ENCFF419RSJ, ENCFF827GWN, ENCFF872NFM 669929 ENCODE Processing Pipeline 386295fbc82dde319150f304741c8fce https://www.encodeproject.org/files/ENCFF771LVW/@@download/ENCFF771LVW.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF065FSR bigBed narrowPeak conservative idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF771LVW 1454054 ENCODE Processing Pipeline e4cd4e08e3755173f89081341e136a88 https://www.encodeproject.org/files/ENCFF065FSR/@@download/ENCFF065FSR.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF182MNO bed narrowPeak optimal idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF271QTZ, ENCFF419RSJ, ENCFF827GWN, ENCFF872NFM 753608 ENCODE Processing Pipeline 62346989db6fe72bd2f91d3dc4ab8251 https://www.encodeproject.org/files/ENCFF182MNO/@@download/ENCFF182MNO.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF719PKP bigBed narrowPeak optimal idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF182MNO 1590730 ENCODE Processing Pipeline 52aecf64314b592e705cb6e43cdde33c https://www.encodeproject.org/files/ENCFF719PKP/@@download/ENCFF719PKP.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF667AIA bigWig signal p-value ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF676XEB 1066698457 ENCODE Processing Pipeline e9f2119230b3a99c53fa57835ec2def0 https://www.encodeproject.org/files/ENCFF667AIA/@@download/ENCFF667AIA.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF104XHY bigWig fold change over control ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF676XEB 1073415000 ENCODE Processing Pipeline cba7938a87e22ad0a4adb01edacaf7b5 https://www.encodeproject.org/files/ENCFF104XHY/@@download/ENCFF104XHY.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF079QLM bigWig signal p-value ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF258YDE 1120829601 ENCODE Processing Pipeline 73b72954725789fec8bc88d454257e12 https://www.encodeproject.org/files/ENCFF079QLM/@@download/ENCFF079QLM.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF113DJG bigWig fold change over control ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF258YDE 1117967331 ENCODE Processing Pipeline 21b2097a709ddd2cd093c034fe11181d https://www.encodeproject.org/files/ENCFF113DJG/@@download/ENCFF113DJG.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF391MYD bigBed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF921XMX 13616988 ENCODE Processing Pipeline 4da71ad02c334c4934ac6996cd65bfe1 https://www.encodeproject.org/files/ENCFF391MYD/@@download/ENCFF391MYD.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF921XMX bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF258YDE, ENCFF581ZJL, ENCFF676XEB 7239819 ENCODE Processing Pipeline 7723316ad3320154f372a4bf52e89296 https://www.encodeproject.org/files/ENCFF921XMX/@@download/ENCFF921XMX.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF194ITG bigBed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF548UHD 13680493 ENCODE Processing Pipeline 32044e50980d29993b5dc059ff3d1380 https://www.encodeproject.org/files/ENCFF194ITG/@@download/ENCFF194ITG.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF491DNM bed narrowPeak conservative idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF548UHD, ENCFF921XMX, ENCFF970NGB 667035 ENCODE Processing Pipeline c3c71c57616b074751381f76028d805f https://www.encodeproject.org/files/ENCFF491DNM/@@download/ENCFF491DNM.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF548UHD bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF676XEB 6799104 ENCODE Processing Pipeline e68b977e6644a4f73fac05bed4c8dc48 https://www.encodeproject.org/files/ENCFF548UHD/@@download/ENCFF548UHD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF786NCN bigBed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF970NGB 13377483 ENCODE Processing Pipeline 7868b99d9b5a049854bff33c94378512 https://www.encodeproject.org/files/ENCFF786NCN/@@download/ENCFF786NCN.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF710IEF bed narrowPeak optimal idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF548UHD, ENCFF921XMX, ENCFF970NGB 764540 ENCODE Processing Pipeline e9766301d4959d4c2c900a42e3e9c2d2 https://www.encodeproject.org/files/ENCFF710IEF/@@download/ENCFF710IEF.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF970NGB bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF258YDE 7015068 ENCODE Processing Pipeline 08c59c7cf79bbb2336108666f30034c4 https://www.encodeproject.org/files/ENCFF970NGB/@@download/ENCFF970NGB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF335HBO bigBed narrowPeak conservative idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF491DNM 1446404 ENCODE Processing Pipeline d6571dbba2abbd032f987bb53d5682e4 https://www.encodeproject.org/files/ENCFF335HBO/@@download/ENCFF335HBO.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF881VCR bigBed narrowPeak optimal idr thresholded peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF710IEF 1604210 ENCODE Processing Pipeline 3beef78b46c46b85617718cdaf32df84 https://www.encodeproject.org/files/ENCFF881VCR/@@download/ENCFF881VCR.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF407EQP fastq reads ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 1 100 paired-ended 1 ENCFF406IUD 2951647164 Michael Snyder, Stanford 3d5d9dc97f0a0f4cc8868fa345cc7c15 SRA:SRR6213727 https://www.encodeproject.org/files/ENCFF407EQP/@@download/ENCFF407EQP.fastq.gz Illumina HiSeq 4000 /files/ENCFF843TAS/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF406IUD fastq reads ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 1 100 paired-ended 2 ENCFF407EQP 3674780314 Michael Snyder, Stanford 7e23950e1668c93c81177eff7cc3f6a5 SRA:SRR6213727 https://www.encodeproject.org/files/ENCFF406IUD/@@download/ENCFF406IUD.fastq.gz Illumina HiSeq 4000 /files/ENCFF136QKF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF443HCU bam unfiltered alignments ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF406IUD, ENCFF407EQP, ENCFF807MUK 5640059156 ENCODE Processing Pipeline bd7dd10bf8f1d953571ad45cae5d3921 https://www.encodeproject.org/files/ENCFF443HCU/@@download/ENCFF443HCU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF183ETF bam unfiltered alignments ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF406IUD, ENCFF407EQP, ENCFF643CGH 5632570718 ENCODE Processing Pipeline 2d89dc6fb4366e2cbf951fc93ad66581 https://www.encodeproject.org/files/ENCFF183ETF/@@download/ENCFF183ETF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF827MXQ bam alignments ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF406IUD, ENCFF407EQP, ENCFF807MUK 2732731195 ENCODE Processing Pipeline ee1b3bd60c4f5a764b6426fb5737b1a5 https://www.encodeproject.org/files/ENCFF827MXQ/@@download/ENCFF827MXQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF570KCI bam alignments ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF406IUD, ENCFF407EQP, ENCFF643CGH 2734710814 ENCODE Processing Pipeline fccfdbfbc835d04748984ceca88465db https://www.encodeproject.org/files/ENCFF570KCI/@@download/ENCFF570KCI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF548VSM bigWig signal p-value ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF550SXD, ENCFF827MXQ 954738900 ENCODE Processing Pipeline 3ba7212c1b1b2b23015f58d2f28fc7de https://www.encodeproject.org/files/ENCFF548VSM/@@download/ENCFF548VSM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF853AZX bigBed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF258KBF 13768189 ENCODE Processing Pipeline 7f85a0d68fafe067f5fe7c6fdd10eb47 https://www.encodeproject.org/files/ENCFF853AZX/@@download/ENCFF853AZX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF246QUK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF001TDO, ENCFF258KBF 561465 ENCODE Processing Pipeline aef6aba92976370dbdf8eb235a5fba29 https://www.encodeproject.org/files/ENCFF246QUK/@@download/ENCFF246QUK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF524TBR bigWig fold change over control ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF550SXD, ENCFF827MXQ 957621436 ENCODE Processing Pipeline 423c5ffdab4476ad97f730367156edef https://www.encodeproject.org/files/ENCFF524TBR/@@download/ENCFF524TBR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF258KBF bed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF550SXD, ENCFF827MXQ 6248779 ENCODE Processing Pipeline be3428ea336cd60cd52bdc1fcff809ef https://www.encodeproject.org/files/ENCFF258KBF/@@download/ENCFF258KBF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF675ZPO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF246QUK 1002217 ENCODE Processing Pipeline 8087e49fe11a62db5f5436a95023fc1f https://www.encodeproject.org/files/ENCFF675ZPO/@@download/ENCFF675ZPO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF072KUF bigWig fold change over control ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF570KCI, ENCFF788IDQ 958056189 ENCODE Processing Pipeline 36064e1db7f3115aaa51cb4b29d1e112 https://www.encodeproject.org/files/ENCFF072KUF/@@download/ENCFF072KUF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF591PIT bed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF570KCI, ENCFF788IDQ 6293059 ENCODE Processing Pipeline 9266e4aa8a8da0e0471ac025872e8929 https://www.encodeproject.org/files/ENCFF591PIT/@@download/ENCFF591PIT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF960TOX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF419RSJ, ENCFF591PIT 573237 ENCODE Processing Pipeline 793db42fe0db03509d00886aa740c448 https://www.encodeproject.org/files/ENCFF960TOX/@@download/ENCFF960TOX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF528ENR bigWig signal p-value ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF570KCI, ENCFF788IDQ 1013198049 ENCODE Processing Pipeline 6d0c8f41df1cebcfd6a8b6634a92fdc9 https://www.encodeproject.org/files/ENCFF528ENR/@@download/ENCFF528ENR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF434JUK bigBed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF591PIT 13836513 ENCODE Processing Pipeline afe90634352b911c5f1e799a1e042899 https://www.encodeproject.org/files/ENCFF434JUK/@@download/ENCFF434JUK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF855ANJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF960TOX 1023830 ENCODE Processing Pipeline 543e425eca94308a3df04bb4149cc212 https://www.encodeproject.org/files/ENCFF855ANJ/@@download/ENCFF855ANJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF168ACZ fastq reads ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF107NVA 3238282518 Richard Myers, HAIB 40576f4a9f62568b13a320094ea8d6ec https://www.encodeproject.org/files/ENCFF168ACZ/@@download/ENCFF168ACZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF323QXB/ released antibody characterized with exemption experiment not submitted to GEO ENCFF107NVA fastq reads ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF168ACZ 3310054939 Richard Myers, HAIB 11fe5df7a848036f47ea1c75a7bb2b7c https://www.encodeproject.org/files/ENCFF107NVA/@@download/ENCFF107NVA.fastq.gz Illumina HiSeq 2000 /files/ENCFF291KWD/ released antibody characterized with exemption experiment not submitted to GEO ENCFF457HWE bam unfiltered alignments ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF107NVA, ENCFF168ACZ, ENCFF807MUK 7251744227 ENCODE Processing Pipeline ff898636ef0d0446934d56b74e828a0d https://www.encodeproject.org/files/ENCFF457HWE/@@download/ENCFF457HWE.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF054XTB bam alignments ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF107NVA, ENCFF168ACZ, ENCFF807MUK 4962255454 ENCODE Processing Pipeline 9e05964d35b18b88deaa6ebb19ea00c0 https://www.encodeproject.org/files/ENCFF054XTB/@@download/ENCFF054XTB.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF939MWT bam alignments ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF107NVA, ENCFF168ACZ, ENCFF643CGH 4965806951 ENCODE Processing Pipeline 76974b07bfa25eb208842932b5bb1f1e https://www.encodeproject.org/files/ENCFF939MWT/@@download/ENCFF939MWT.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF928DRB bam unfiltered alignments ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF107NVA, ENCFF168ACZ, ENCFF643CGH 7267995518 ENCODE Processing Pipeline f49bfc2c86ca4a74556cb6f041676c43 https://www.encodeproject.org/files/ENCFF928DRB/@@download/ENCFF928DRB.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF555PVZ bed narrowPeak peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF207QPG, ENCFF939MWT 7063304 ENCODE Processing Pipeline d11402b07d3e0fa17cb30689fca5d0a8 https://www.encodeproject.org/files/ENCFF555PVZ/@@download/ENCFF555PVZ.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF965HAP bigWig signal p-value ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF207QPG, ENCFF939MWT 1912667161 ENCODE Processing Pipeline 22ec89612152aedc21e52acf9087d5fb https://www.encodeproject.org/files/ENCFF965HAP/@@download/ENCFF965HAP.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF444VGY bed narrowPeak peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF054XTB, ENCFF559IFX 7119153 ENCODE Processing Pipeline b7d3368470103c4a5374888a107557cf https://www.encodeproject.org/files/ENCFF444VGY/@@download/ENCFF444VGY.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF372RYV bigBed narrowPeak peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF555PVZ 12857521 ENCODE Processing Pipeline 514f7c44aef7e8c1d6b258eab8b9c2d7 https://www.encodeproject.org/files/ENCFF372RYV/@@download/ENCFF372RYV.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF547PHI bigWig fold change over control ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF207QPG, ENCFF939MWT 1748454056 ENCODE Processing Pipeline 8b425e5ea9ca46c1065d8f987bb054d6 https://www.encodeproject.org/files/ENCFF547PHI/@@download/ENCFF547PHI.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF210AWI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF134BTP 1670610 ENCODE Processing Pipeline c4d7aea8b1aafcebab3dae11c49e2afc https://www.encodeproject.org/files/ENCFF210AWI/@@download/ENCFF210AWI.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF196PEM bigWig fold change over control ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF054XTB, ENCFF559IFX 1756508551 ENCODE Processing Pipeline 328354a0d699b009526c68cec08982d5 https://www.encodeproject.org/files/ENCFF196PEM/@@download/ENCFF196PEM.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF134BTP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF555PVZ 934534 ENCODE Processing Pipeline a3a0e8500adb12fecffbc1a6473628ae https://www.encodeproject.org/files/ENCFF134BTP/@@download/ENCFF134BTP.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF406SOZ bigBed narrowPeak peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF444VGY 12920067 ENCODE Processing Pipeline 0f94c33f82af504010937416720736af https://www.encodeproject.org/files/ENCFF406SOZ/@@download/ENCFF406SOZ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF870LOR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF444VGY 951343 ENCODE Processing Pipeline b37abfcb3dc8b07dabd7cbfa4442b204 https://www.encodeproject.org/files/ENCFF870LOR/@@download/ENCFF870LOR.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF160ZUB bigWig signal p-value ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF054XTB, ENCFF559IFX 1624397988 ENCODE Processing Pipeline 94b7c22c0e1a86052e7a30a78deb27d3 https://www.encodeproject.org/files/ENCFF160ZUB/@@download/ENCFF160ZUB.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF971FCU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF870LOR 2144480 ENCODE Processing Pipeline 2ce26ed589de4c22a8e19790d660d30a https://www.encodeproject.org/files/ENCFF971FCU/@@download/ENCFF971FCU.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF560UPE fastq reads ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 1 100 paired-ended 1 ENCFF367GUA 2465680863 Michael Snyder, Stanford 081ed34d70a6a7a5d951657c77da77a7 https://www.encodeproject.org/files/ENCFF560UPE/@@download/ENCFF560UPE.fastq.gz Illumina HiSeq 4000 /files/ENCFF766DIC/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF367GUA fastq reads ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 1 100 paired-ended 2 ENCFF560UPE 2988630187 Michael Snyder, Stanford d1907d162d61e0373bc7a2d056b7d2e9 https://www.encodeproject.org/files/ENCFF367GUA/@@download/ENCFF367GUA.fastq.gz Illumina HiSeq 4000 /files/ENCFF188JJJ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF517BTP bam unfiltered alignments ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 100 ENCFF367GUA, ENCFF560UPE, ENCFF807MUK 4740664921 ENCODE Processing Pipeline 08d8bc5139e30dd95c8626a93dd60d49 https://www.encodeproject.org/files/ENCFF517BTP/@@download/ENCFF517BTP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF342QYG bam unfiltered alignments ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 100 ENCFF367GUA, ENCFF560UPE, ENCFF643CGH 4737196259 ENCODE Processing Pipeline b6ca090d70980274a1ba0f0412368c83 https://www.encodeproject.org/files/ENCFF342QYG/@@download/ENCFF342QYG.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF387LUX bam alignments ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 100 ENCFF367GUA, ENCFF560UPE, ENCFF807MUK 2496996904 ENCODE Processing Pipeline 4f9f1fb8c28d3db158642ba263f50885 https://www.encodeproject.org/files/ENCFF387LUX/@@download/ENCFF387LUX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF664CZI bam alignments ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 100 ENCFF367GUA, ENCFF560UPE, ENCFF643CGH 2500717262 ENCODE Processing Pipeline 9eb609a85bb4b0a52204df13b6e2b8bd https://www.encodeproject.org/files/ENCFF664CZI/@@download/ENCFF664CZI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF190IBB fastq reads ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF856IQE 2104977879 Richard Myers, HAIB 17bdc0fa6cb9690a3cdeadee19edb978 SRA:SRR6214205 https://www.encodeproject.org/files/ENCFF190IBB/@@download/ENCFF190IBB.fastq.gz Illumina HiSeq 2000 /files/ENCFF911DDV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF856IQE fastq reads ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF190IBB 2216509818 Richard Myers, HAIB 75085bf134f772a14e876cda1d9bbf35 SRA:SRR6214205 https://www.encodeproject.org/files/ENCFF856IQE/@@download/ENCFF856IQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF770NPT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF019LKT bam unfiltered alignments ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF190IBB, ENCFF807MUK, ENCFF856IQE 4972670924 ENCODE Processing Pipeline 8fabf6d97780ced0e5fcf72152e4166a https://www.encodeproject.org/files/ENCFF019LKT/@@download/ENCFF019LKT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF059WXP bam unfiltered alignments ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF190IBB, ENCFF643CGH, ENCFF856IQE 4989946056 ENCODE Processing Pipeline d4fbd11a9725eeacb5a4c9271344f080 https://www.encodeproject.org/files/ENCFF059WXP/@@download/ENCFF059WXP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF489YYE bam alignments ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF190IBB, ENCFF807MUK, ENCFF856IQE 2844724386 ENCODE Processing Pipeline 7b44d353489e3ab050c9b632030bbc59 https://www.encodeproject.org/files/ENCFF489YYE/@@download/ENCFF489YYE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF831UVV bam alignments ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF190IBB, ENCFF643CGH, ENCFF856IQE 2847394263 ENCODE Processing Pipeline 50e82d9c253c0f189a3a65ffacd782f5 https://www.encodeproject.org/files/ENCFF831UVV/@@download/ENCFF831UVV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF225KVV bigWig fold change over control ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF831UVV 1193857253 ENCODE Processing Pipeline 61ba8e40d28b6ddae8a082000945242b https://www.encodeproject.org/files/ENCFF225KVV/@@download/ENCFF225KVV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF675MAI bed narrowPeak peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF831UVV 5394915 ENCODE Processing Pipeline 2fddb7c21a9add14a0318748d983fcdc https://www.encodeproject.org/files/ENCFF675MAI/@@download/ENCFF675MAI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF042DNR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF675MAI 586 ENCODE Processing Pipeline 81a0ac52b03dc1424624400101fe64d4 https://www.encodeproject.org/files/ENCFF042DNR/@@download/ENCFF042DNR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF941SCI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF042DNR 41951 ENCODE Processing Pipeline 8cbe4cb1dbd3cccdaefb5e85940ba828 https://www.encodeproject.org/files/ENCFF941SCI/@@download/ENCFF941SCI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF215YWT bigWig signal p-value ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF831UVV 1356991455 ENCODE Processing Pipeline 6943c32101d7b33f583ab95c5853e8de https://www.encodeproject.org/files/ENCFF215YWT/@@download/ENCFF215YWT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF368UAQ bigBed narrowPeak peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF675MAI 11694922 ENCODE Processing Pipeline a3f3225043b3ad910c940e0ec50414e5 https://www.encodeproject.org/files/ENCFF368UAQ/@@download/ENCFF368UAQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF605WDK bigWig signal p-value ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489YYE 1178752800 ENCODE Processing Pipeline 92ee56f5d1311fe4464ac0101db57263 https://www.encodeproject.org/files/ENCFF605WDK/@@download/ENCFF605WDK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF563WGT bed narrowPeak peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489YYE 5389099 ENCODE Processing Pipeline 0f310cd34a9ae63e588e87d6d7495e81 https://www.encodeproject.org/files/ENCFF563WGT/@@download/ENCFF563WGT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF728JAJ bigWig fold change over control ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489YYE 1202423169 ENCODE Processing Pipeline e0b174e01883d6959c45fd59938df609 https://www.encodeproject.org/files/ENCFF728JAJ/@@download/ENCFF728JAJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF947KAS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF109PJK 28855 ENCODE Processing Pipeline 52a76e4508038dc86215099652eb91a9 https://www.encodeproject.org/files/ENCFF947KAS/@@download/ENCFF947KAS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF980YZM bigBed narrowPeak peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF563WGT 11669604 ENCODE Processing Pipeline da41cc8bbfc9841936579327d9c4d80e https://www.encodeproject.org/files/ENCFF980YZM/@@download/ENCFF980YZM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF109PJK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF563WGT 575 ENCODE Processing Pipeline f889c3b7453e31ae3ffc7154c7361d60 https://www.encodeproject.org/files/ENCFF109PJK/@@download/ENCFF109PJK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF226BLN fastq reads ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF145UNV 2566886660 Michael Snyder, Stanford 44f81ff6a72e8556948de8a9f901cf0b SRA:SRR6213155 https://www.encodeproject.org/files/ENCFF226BLN/@@download/ENCFF226BLN.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF256EWC fastq reads ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF198ANZ 2628982179 Michael Snyder, Stanford ffadab6fc73abf4612113d402a80a473 SRA:SRR6213154 https://www.encodeproject.org/files/ENCFF256EWC/@@download/ENCFF256EWC.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF198ANZ fastq reads ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF256EWC 3213908988 Michael Snyder, Stanford 937d464f820d55f028a577638399478a SRA:SRR6213154 https://www.encodeproject.org/files/ENCFF198ANZ/@@download/ENCFF198ANZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF145UNV fastq reads ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF226BLN 3139757516 Michael Snyder, Stanford 036a3d576ff0f781878a1404d1dff19a SRA:SRR6213155 https://www.encodeproject.org/files/ENCFF145UNV/@@download/ENCFF145UNV.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF678TWD bam unfiltered alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF198ANZ, ENCFF256EWC, ENCFF807MUK 5921061827 ENCODE Processing Pipeline 195d8d22d8c8443850fe50caf5f39433 https://www.encodeproject.org/files/ENCFF678TWD/@@download/ENCFF678TWD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF828GFO bam unfiltered alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF198ANZ, ENCFF256EWC, ENCFF643CGH 5932633016 ENCODE Processing Pipeline c9f9ccde59bb4a45274c6caa35622137 https://www.encodeproject.org/files/ENCFF828GFO/@@download/ENCFF828GFO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF752ROK bam unfiltered alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF145UNV, ENCFF226BLN, ENCFF807MUK 5808435783 ENCODE Processing Pipeline 28e36b3a942e2edf89c07d6e78881b25 https://www.encodeproject.org/files/ENCFF752ROK/@@download/ENCFF752ROK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF219SYV bam unfiltered alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF145UNV, ENCFF226BLN, ENCFF643CGH 5820158080 ENCODE Processing Pipeline 70523aac152713b9da38df97b1b5bf44 https://www.encodeproject.org/files/ENCFF219SYV/@@download/ENCFF219SYV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF809ZWP bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF145UNV, ENCFF226BLN, ENCFF807MUK 4776633600 ENCODE Processing Pipeline 05bd05afe160742c9618c97007bc1f6a https://www.encodeproject.org/files/ENCFF809ZWP/@@download/ENCFF809ZWP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF714MNN bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF145UNV, ENCFF226BLN, ENCFF643CGH 4781645296 ENCODE Processing Pipeline 45f402cf10781d2a6218cb1b28299da9 https://www.encodeproject.org/files/ENCFF714MNN/@@download/ENCFF714MNN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF130BYF bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF198ANZ, ENCFF256EWC, ENCFF807MUK 4785846416 ENCODE Processing Pipeline f5f6e46f9e0bad9145da18d1bcb5ed76 https://www.encodeproject.org/files/ENCFF130BYF/@@download/ENCFF130BYF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF078CGH bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF198ANZ, ENCFF256EWC, ENCFF643CGH 4790646755 ENCODE Processing Pipeline 0c8799ab96b4137ffce446ae14c2dcc4 https://www.encodeproject.org/files/ENCFF078CGH/@@download/ENCFF078CGH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF534HOV bigWig signal p-value ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF809ZWP 1655565229 ENCODE Processing Pipeline 6719d8d9e25fe4a4045407f5b097b65e https://www.encodeproject.org/files/ENCFF534HOV/@@download/ENCFF534HOV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF431SUM bigWig signal p-value ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF130BYF, ENCFF182WHU 1675316762 ENCODE Processing Pipeline 4cf90371f0a764e89723fd68c5032943 https://www.encodeproject.org/files/ENCFF431SUM/@@download/ENCFF431SUM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF576QXF bigWig signal p-value ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF130BYF, ENCFF182WHU, ENCFF809ZWP 1973049023 ENCODE Processing Pipeline cebbef7ef83c64a661b132860a6f8fdf https://www.encodeproject.org/files/ENCFF576QXF/@@download/ENCFF576QXF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF036ZQU bigWig fold change over control ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF809ZWP 1682816580 ENCODE Processing Pipeline 1a4388475ed5ef24a93300e522225ad0 https://www.encodeproject.org/files/ENCFF036ZQU/@@download/ENCFF036ZQU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF722SNO bigWig signal p-value ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF714MNN, ENCFF810LLR 1409162799 ENCODE Processing Pipeline 1f5fe1c3fecbf1578c6f7efcfc48a593 https://www.encodeproject.org/files/ENCFF722SNO/@@download/ENCFF722SNO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF283MOE bigWig signal p-value ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF078CGH, ENCFF714MNN, ENCFF810LLR 1958747100 ENCODE Processing Pipeline 5f1ae58caa79c521ac5be95f9dad92dc https://www.encodeproject.org/files/ENCFF283MOE/@@download/ENCFF283MOE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF514NTN bigWig signal p-value ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF078CGH, ENCFF810LLR 1289759506 ENCODE Processing Pipeline d747274f45f99b6091271fb7a0441841 https://www.encodeproject.org/files/ENCFF514NTN/@@download/ENCFF514NTN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF725MTM bigWig fold change over control ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF714MNN, ENCFF810LLR 1683895131 ENCODE Processing Pipeline 5801514a1b2b21c934d567c95132c5f0 https://www.encodeproject.org/files/ENCFF725MTM/@@download/ENCFF725MTM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF775ZUT bigWig fold change over control ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF078CGH, ENCFF714MNN, ENCFF810LLR 2263306812 ENCODE Processing Pipeline 02fcb55cc2e1b46d7283b655fe340a03 https://www.encodeproject.org/files/ENCFF775ZUT/@@download/ENCFF775ZUT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF270AYE bigWig fold change over control ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF130BYF, ENCFF182WHU 1661209554 ENCODE Processing Pipeline 6c15f51b934059eb2ae03ad790614c31 https://www.encodeproject.org/files/ENCFF270AYE/@@download/ENCFF270AYE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF239VVK bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF714MNN, ENCFF810LLR 6629030 ENCODE Processing Pipeline 524738913546bdc28b35d632ac232075 https://www.encodeproject.org/files/ENCFF239VVK/@@download/ENCFF239VVK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF256ISB bigWig fold change over control ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF078CGH, ENCFF810LLR 1680103606 ENCODE Processing Pipeline 33cf12e3ff552bc6330385d571b7a989 https://www.encodeproject.org/files/ENCFF256ISB/@@download/ENCFF256ISB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF210CUK bigWig fold change over control ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF130BYF, ENCFF182WHU, ENCFF809ZWP 2282306951 ENCODE Processing Pipeline df9d65483cfee589d02cfadc7accf7b4 https://www.encodeproject.org/files/ENCFF210CUK/@@download/ENCFF210CUK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF173YLW bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF809ZWP 6618509 ENCODE Processing Pipeline 317647d1d1afdeff3354e77ddbabcfbc https://www.encodeproject.org/files/ENCFF173YLW/@@download/ENCFF173YLW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF572OQG bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF078CGH, ENCFF714MNN, ENCFF810LLR 7291228 ENCODE Processing Pipeline 3bd8caa8c05af4746d79714cd6d639b7 https://www.encodeproject.org/files/ENCFF572OQG/@@download/ENCFF572OQG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF781BPT bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF078CGH, ENCFF810LLR 6665734 ENCODE Processing Pipeline fb136ed686cf2e2fa1338b54f9056f16 https://www.encodeproject.org/files/ENCFF781BPT/@@download/ENCFF781BPT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF725RDL bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF130BYF, ENCFF182WHU, ENCFF809ZWP 7282788 ENCODE Processing Pipeline f25e49db1be10dd4a5ca264de2fc1ace https://www.encodeproject.org/files/ENCFF725RDL/@@download/ENCFF725RDL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF662ZAH bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF130BYF, ENCFF182WHU 6625630 ENCODE Processing Pipeline 2fce0db0ccdf770da4264f70d0df5c4a https://www.encodeproject.org/files/ENCFF662ZAH/@@download/ENCFF662ZAH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF641HHR bigBed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF173YLW 11062823 ENCODE Processing Pipeline b29fc0805c3778c49064209f276b076d https://www.encodeproject.org/files/ENCFF641HHR/@@download/ENCFF641HHR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF026PPY bigBed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF239VVK 11081003 ENCODE Processing Pipeline dcc07564b4564f04afa2ddafa28e8057 https://www.encodeproject.org/files/ENCFF026PPY/@@download/ENCFF026PPY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF304WAE bigBed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF781BPT 11091284 ENCODE Processing Pipeline 54486b5d5e2c670a04e1d400b2205525 https://www.encodeproject.org/files/ENCFF304WAE/@@download/ENCFF304WAE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF154CJC bigBed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF725RDL 11263462 ENCODE Processing Pipeline ec874252b84581543500969d37d22623 https://www.encodeproject.org/files/ENCFF154CJC/@@download/ENCFF154CJC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF213JFS bigBed narrowPeak conservative idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF056PFS 97098 ENCODE Processing Pipeline 42e2cbdec77813cf38ba6002df1a3876 https://www.encodeproject.org/files/ENCFF213JFS/@@download/ENCFF213JFS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF770SPS bed narrowPeak conservative idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF173YLW, ENCFF662ZAH, ENCFF725RDL 17739 ENCODE Processing Pipeline fdae2cc5d3c51c8f88eafb4d425ea099 https://www.encodeproject.org/files/ENCFF770SPS/@@download/ENCFF770SPS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF388XSN bed narrowPeak optimal idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF239VVK, ENCFF419RSJ, ENCFF572OQG, ENCFF781BPT 31471 ENCODE Processing Pipeline efeca31d2d5523b7ee90aa0e53668db9 https://www.encodeproject.org/files/ENCFF388XSN/@@download/ENCFF388XSN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF801PWY bigBed narrowPeak conservative idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF770SPS 80342 ENCODE Processing Pipeline 72629da16d9f9b8a67065a8971dd35e2 https://www.encodeproject.org/files/ENCFF801PWY/@@download/ENCFF801PWY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF288IAO bigBed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF662ZAH 11077798 ENCODE Processing Pipeline 1bff0bc0eafc94a2df9b23e176f64241 https://www.encodeproject.org/files/ENCFF288IAO/@@download/ENCFF288IAO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF373TJD bigBed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF572OQG 11282245 ENCODE Processing Pipeline 53cdb051f87029ef0de23be9002fafc9 https://www.encodeproject.org/files/ENCFF373TJD/@@download/ENCFF373TJD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF056PFS bed narrowPeak conservative idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF239VVK, ENCFF419RSJ, ENCFF572OQG, ENCFF781BPT 18945 ENCODE Processing Pipeline 1c4ba4625cfd70a70eda443d74cab259 https://www.encodeproject.org/files/ENCFF056PFS/@@download/ENCFF056PFS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF456OWX bigBed narrowPeak optimal idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF086VOQ 96230 ENCODE Processing Pipeline 7076cf347e635cddff0c73f483ca5154 https://www.encodeproject.org/files/ENCFF456OWX/@@download/ENCFF456OWX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF439RRH bigBed narrowPeak optimal idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF388XSN 103238 ENCODE Processing Pipeline 0f878fa4f157631eff87bf6a18711343 https://www.encodeproject.org/files/ENCFF439RRH/@@download/ENCFF439RRH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF086VOQ bed narrowPeak optimal idr thresholded peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF173YLW, ENCFF662ZAH, ENCFF725RDL 28327 ENCODE Processing Pipeline 7bd05db1401f12a144f1e69acebf06f3 https://www.encodeproject.org/files/ENCFF086VOQ/@@download/ENCFF086VOQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF381VYX bam unfiltered alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 100 ENCFF223BRR, ENCFF807MUK, ENCFF839NSQ 4171736374 ENCODE Processing Pipeline 1f630e00033c4d894099d5124e4c8fe8 https://www.encodeproject.org/files/ENCFF381VYX/@@download/ENCFF381VYX.bam hg19 released antibody characterized with exemption ENCFF294LPO bam unfiltered alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 100 ENCFF796XXQ, ENCFF807MUK, ENCFF920GKJ 5226805545 ENCODE Processing Pipeline d89f525ba16cb7e4118c3ad644143d5f https://www.encodeproject.org/files/ENCFF294LPO/@@download/ENCFF294LPO.bam hg19 released antibody characterized with exemption ENCFF796XXQ fastq reads ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 1 100 paired-ended 1 ENCFF920GKJ 2384931372 Michael Snyder, Stanford f66c96b9bed280a40f377945ba99e195 SRA:SRR6212906 https://www.encodeproject.org/files/ENCFF796XXQ/@@download/ENCFF796XXQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption ENCFF920GKJ fastq reads ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 1 100 paired-ended 2 ENCFF796XXQ 2402346911 Michael Snyder, Stanford 3025002ed12d81769af60970550df16b SRA:SRR6212906 https://www.encodeproject.org/files/ENCFF920GKJ/@@download/ENCFF920GKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption ENCFF223BRR fastq reads ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 1 ENCFF839NSQ 1894725576 Michael Snyder, Stanford 1962bd9362f4c524fdb8ed4e16ad003b SRA:SRR6212905 https://www.encodeproject.org/files/ENCFF223BRR/@@download/ENCFF223BRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption ENCFF839NSQ fastq reads ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 2 ENCFF223BRR 1912469538 Michael Snyder, Stanford 5a6b044a35627790795f45a6bede2d5b SRA:SRR6212905 https://www.encodeproject.org/files/ENCFF839NSQ/@@download/ENCFF839NSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption ENCFF207HQD bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 100 ENCFF223BRR, ENCFF807MUK, ENCFF839NSQ 3646007174 ENCODE Processing Pipeline 19bfd74c7f090db1c0c727af95631130 https://www.encodeproject.org/files/ENCFF207HQD/@@download/ENCFF207HQD.bam hg19 released antibody characterized with exemption ENCFF153FSJ bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 100 ENCFF796XXQ, ENCFF807MUK, ENCFF920GKJ 4522759436 ENCODE Processing Pipeline 5ca27eed13dc3a23c32b0d17a8f36e0f https://www.encodeproject.org/files/ENCFF153FSJ/@@download/ENCFF153FSJ.bam hg19 released antibody characterized with exemption ENCFF439NEC bigWig signal p-value ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF207HQD, ENCFF581ZJL 1137678985 ENCODE Processing Pipeline a26f1572fdf6b69725bc3aecf1972682 https://www.encodeproject.org/files/ENCFF439NEC/@@download/ENCFF439NEC.bigWig hg19 released antibody characterized with exemption ENCFF243VBE bigWig signal p-value ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF153FSJ 1119871740 ENCODE Processing Pipeline da98f40f35ced94b48ab4dcb87f50227 https://www.encodeproject.org/files/ENCFF243VBE/@@download/ENCFF243VBE.bigWig hg19 released antibody characterized with exemption ENCFF217PUI bigWig signal p-value ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF153FSJ, ENCFF207HQD, ENCFF581ZJL 1790698260 ENCODE Processing Pipeline d3815e3722b1a28c3d13d7719c69e812 https://www.encodeproject.org/files/ENCFF217PUI/@@download/ENCFF217PUI.bigWig hg19 released antibody characterized with exemption ENCFF664JOR bigWig fold change over control ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF207HQD, ENCFF581ZJL 1081020142 ENCODE Processing Pipeline ea528dfb1691e2864e8c1f75a79e5c25 https://www.encodeproject.org/files/ENCFF664JOR/@@download/ENCFF664JOR.bigWig hg19 released antibody characterized with exemption ENCFF564ODS bigWig fold change over control ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF153FSJ 1195500121 ENCODE Processing Pipeline 43d5acb0d85e827e2193e458747dfcc5 https://www.encodeproject.org/files/ENCFF564ODS/@@download/ENCFF564ODS.bigWig hg19 released antibody characterized with exemption ENCFF715FKT bigWig fold change over control ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF153FSJ, ENCFF207HQD, ENCFF581ZJL 2083794349 ENCODE Processing Pipeline 8853a71a6d92da06524d09a2bd8a0c74 https://www.encodeproject.org/files/ENCFF715FKT/@@download/ENCFF715FKT.bigWig hg19 released antibody characterized with exemption ENCFF537WGM bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF207HQD, ENCFF581ZJL 6921340 ENCODE Processing Pipeline 93a0ffdf4ad41df3b9c58f6d97807eab https://www.encodeproject.org/files/ENCFF537WGM/@@download/ENCFF537WGM.bed.gz hg19 released antibody characterized with exemption ENCFF551YGS bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF153FSJ 6917819 ENCODE Processing Pipeline 2cae284037126b33f97ce7c6234a34f6 https://www.encodeproject.org/files/ENCFF551YGS/@@download/ENCFF551YGS.bed.gz hg19 released antibody characterized with exemption ENCFF145ZDC bigBed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF551YGS 13169257 ENCODE Processing Pipeline 0291c7d2163cf54f561f84110e1ccc24 https://www.encodeproject.org/files/ENCFF145ZDC/@@download/ENCFF145ZDC.bigBed hg19 released antibody characterized with exemption ENCFF621XGF bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF153FSJ, ENCFF207HQD, ENCFF581ZJL 7237247 ENCODE Processing Pipeline c804f8189ce60593dc50092e9f736670 https://www.encodeproject.org/files/ENCFF621XGF/@@download/ENCFF621XGF.bed.gz hg19 released antibody characterized with exemption ENCFF713NTM bigBed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF537WGM 12868324 ENCODE Processing Pipeline 2b9b5ec46ca02ac534bebaec33b97c2a https://www.encodeproject.org/files/ENCFF713NTM/@@download/ENCFF713NTM.bigBed hg19 released antibody characterized with exemption ENCFF376CSR bigBed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF621XGF 12826846 ENCODE Processing Pipeline d5e7b3a3a05b3026dd1ddc1901bf3cd3 https://www.encodeproject.org/files/ENCFF376CSR/@@download/ENCFF376CSR.bigBed hg19 released antibody characterized with exemption ENCFF593XRH bed narrowPeak conservative idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF537WGM, ENCFF551YGS, ENCFF621XGF 220690 ENCODE Processing Pipeline 7c6cc21b5ee378a78d4235595eaec02a https://www.encodeproject.org/files/ENCFF593XRH/@@download/ENCFF593XRH.bed.gz hg19 released antibody characterized with exemption ENCFF422VFY bigBed narrowPeak conservative idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF593XRH 517684 ENCODE Processing Pipeline 68f90647f15f0149e7928623455d5a72 https://www.encodeproject.org/files/ENCFF422VFY/@@download/ENCFF422VFY.bigBed hg19 released antibody characterized with exemption ENCFF561USY bed narrowPeak optimal idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF537WGM, ENCFF551YGS, ENCFF621XGF 336516 ENCODE Processing Pipeline 4c12ec35960c97bf65d22a7ac9ebd2cf https://www.encodeproject.org/files/ENCFF561USY/@@download/ENCFF561USY.bed.gz hg19 released antibody characterized with exemption ENCFF433FBK bigBed narrowPeak optimal idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF561USY 698573 ENCODE Processing Pipeline 5f0f85a51e24f245d19fd01eee717df4 https://www.encodeproject.org/files/ENCFF433FBK/@@download/ENCFF433FBK.bigBed hg19 released antibody characterized with exemption ENCFF793MDW bam unfiltered alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 100 ENCFF223BRR, ENCFF643CGH, ENCFF839NSQ 4175614962 ENCODE Processing Pipeline 5f817e69179afb6fc5d5cfa58a5d978c https://www.encodeproject.org/files/ENCFF793MDW/@@download/ENCFF793MDW.bam GRCh38 released antibody characterized with exemption ENCFF273SUG bam unfiltered alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 100 ENCFF643CGH, ENCFF796XXQ, ENCFF920GKJ 5232571305 ENCODE Processing Pipeline 5ac8366ee6f5c408c7edac4c02450ab5 https://www.encodeproject.org/files/ENCFF273SUG/@@download/ENCFF273SUG.bam GRCh38 released antibody characterized with exemption ENCFF555QMG bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 100 ENCFF643CGH, ENCFF796XXQ, ENCFF920GKJ 4525972530 ENCODE Processing Pipeline 81f93e3ac3f521dc6fbd4069b7a61346 https://www.encodeproject.org/files/ENCFF555QMG/@@download/ENCFF555QMG.bam GRCh38 released antibody characterized with exemption ENCFF273NVY bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 100 ENCFF223BRR, ENCFF643CGH, ENCFF839NSQ 3647879895 ENCODE Processing Pipeline 30fa0cb4e6046717b17f624bb0123c9f https://www.encodeproject.org/files/ENCFF273NVY/@@download/ENCFF273NVY.bam GRCh38 released antibody characterized with exemption ENCFF670QOX bigWig signal p-value ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF273NVY, ENCFF910IKB 1064265026 ENCODE Processing Pipeline 1a753d6a752167feeca037ef9268f4b8 https://www.encodeproject.org/files/ENCFF670QOX/@@download/ENCFF670QOX.bigWig GRCh38 released antibody characterized with exemption ENCFF194KOQ bigWig signal p-value ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF227IZS, ENCFF555QMG 1075635235 ENCODE Processing Pipeline 0e4f8e7f494331dfb2372a4a9b83b2a0 https://www.encodeproject.org/files/ENCFF194KOQ/@@download/ENCFF194KOQ.bigWig GRCh38 released antibody characterized with exemption ENCFF987FJS bigWig signal p-value ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF227IZS, ENCFF273NVY, ENCFF555QMG, ENCFF910IKB 1984854748 ENCODE Processing Pipeline 985052deaa5678cfaa2c27f2b5739c41 https://www.encodeproject.org/files/ENCFF987FJS/@@download/ENCFF987FJS.bigWig GRCh38 released antibody characterized with exemption ENCFF618NDZ bigWig fold change over control ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF273NVY, ENCFF910IKB 1086869725 ENCODE Processing Pipeline a09e2c5c9c924b95300375e4889510c5 https://www.encodeproject.org/files/ENCFF618NDZ/@@download/ENCFF618NDZ.bigWig GRCh38 released antibody characterized with exemption ENCFF437SEY bigWig fold change over control ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF227IZS, ENCFF555QMG 1225344817 ENCODE Processing Pipeline 6de95922d2ff14ae02222f67d93e354d https://www.encodeproject.org/files/ENCFF437SEY/@@download/ENCFF437SEY.bigWig GRCh38 released antibody characterized with exemption ENCFF814JMY bigWig fold change over control ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF227IZS, ENCFF273NVY, ENCFF555QMG, ENCFF910IKB 2096984217 ENCODE Processing Pipeline 268f3d4504a1b1700153873d6159e2f1 https://www.encodeproject.org/files/ENCFF814JMY/@@download/ENCFF814JMY.bigWig GRCh38 released antibody characterized with exemption ENCFF618DRP bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF273NVY, ENCFF910IKB 6888374 ENCODE Processing Pipeline ce8a95ed684139b21139c0b38a0e0f5d https://www.encodeproject.org/files/ENCFF618DRP/@@download/ENCFF618DRP.bed.gz GRCh38 released antibody characterized with exemption ENCFF268RZL bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF227IZS, ENCFF555QMG 6813366 ENCODE Processing Pipeline 3a99b4ad6655f1c1b6fa1080fcec3ccf https://www.encodeproject.org/files/ENCFF268RZL/@@download/ENCFF268RZL.bed.gz GRCh38 released antibody characterized with exemption ENCFF171VKW bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF227IZS, ENCFF273NVY, ENCFF555QMG, ENCFF910IKB 7233111 ENCODE Processing Pipeline 61140f9234c12a70e60a95d3d141c8a6 https://www.encodeproject.org/files/ENCFF171VKW/@@download/ENCFF171VKW.bed.gz GRCh38 released antibody characterized with exemption ENCFF371JKE bigBed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF618DRP 12915227 ENCODE Processing Pipeline 8d1bffe2a21de736cbfb5707ace95704 https://www.encodeproject.org/files/ENCFF371JKE/@@download/ENCFF371JKE.bigBed GRCh38 released antibody characterized with exemption ENCFF922VOG bigBed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF268RZL 13179959 ENCODE Processing Pipeline 0b8673c9c70edac34e5fdfe47b61ec3a https://www.encodeproject.org/files/ENCFF922VOG/@@download/ENCFF922VOG.bigBed GRCh38 released antibody characterized with exemption ENCFF146TVB bigBed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF171VKW 12849903 ENCODE Processing Pipeline 95a97b6a9829f9add24c2389234e6e7e https://www.encodeproject.org/files/ENCFF146TVB/@@download/ENCFF146TVB.bigBed GRCh38 released antibody characterized with exemption ENCFF830BRF bed narrowPeak conservative idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF171VKW, ENCFF268RZL, ENCFF419RSJ, ENCFF618DRP 220384 ENCODE Processing Pipeline ed1d44e6a3a5c26d395631b73837c8f9 https://www.encodeproject.org/files/ENCFF830BRF/@@download/ENCFF830BRF.bed.gz GRCh38 released antibody characterized with exemption ENCFF250HMO bigBed narrowPeak conservative idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF830BRF 520653 ENCODE Processing Pipeline 3c266517b6c3b7966eb3f6af2d17948d https://www.encodeproject.org/files/ENCFF250HMO/@@download/ENCFF250HMO.bigBed GRCh38 released antibody characterized with exemption ENCFF189WAO bed narrowPeak optimal idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF171VKW, ENCFF268RZL, ENCFF419RSJ, ENCFF618DRP 338408 ENCODE Processing Pipeline 6068ae7bdb859eb8165ed7690cd60f4d https://www.encodeproject.org/files/ENCFF189WAO/@@download/ENCFF189WAO.bed.gz GRCh38 released antibody characterized with exemption ENCFF840FFA bigBed narrowPeak optimal idr thresholded peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF189WAO 705435 ENCODE Processing Pipeline 73c68f63a028a7a62c594a3f7cfc5c11 https://www.encodeproject.org/files/ENCFF840FFA/@@download/ENCFF840FFA.bigBed GRCh38 released antibody characterized with exemption ENCFF683YJQ bam unfiltered alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF647APA, ENCFF807MUK 1212486744 ENCODE Processing Pipeline ea2dda0fa88d24f9466c9454da288b05 https://www.encodeproject.org/files/ENCFF683YJQ/@@download/ENCFF683YJQ.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF499RKL bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF807MUK, ENCFF986KEK 768291996 ENCODE Processing Pipeline 9eea22e166c4f62a715792b3c8541cc1 https://www.encodeproject.org/files/ENCFF499RKL/@@download/ENCFF499RKL.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF799EWO bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF647APA, ENCFF807MUK 973545963 ENCODE Processing Pipeline 39bff94f1e98f8614f9b413a8a8846fe https://www.encodeproject.org/files/ENCFF799EWO/@@download/ENCFF799EWO.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF630RZD bam unfiltered alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF807MUK, ENCFF986KEK 983501295 ENCODE Processing Pipeline 77008aff870339c490c281592c36f3c6 https://www.encodeproject.org/files/ENCFF630RZD/@@download/ENCFF630RZD.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF573MNW bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF499RKL, ENCFF956QBZ 517919769 ENCODE Processing Pipeline 179c26f96d5ab5a4948a519024cb0d2b https://www.encodeproject.org/files/ENCFF573MNW/@@download/ENCFF573MNW.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF407BYK bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF799EWO 431116391 ENCODE Processing Pipeline 6bd75f9526e51e0863c3b3fc8ecd03f5 https://www.encodeproject.org/files/ENCFF407BYK/@@download/ENCFF407BYK.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF257HYA bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF499RKL, ENCFF956QBZ 337511718 ENCODE Processing Pipeline c9fe06eeec65a6b56a55b20fb20944ea https://www.encodeproject.org/files/ENCFF257HYA/@@download/ENCFF257HYA.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF404TUM bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF799EWO 505669820 ENCODE Processing Pipeline 778ad3f0f8f356d873c83c6435a56870 https://www.encodeproject.org/files/ENCFF404TUM/@@download/ENCFF404TUM.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF226MDY bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF017YFK, ENCFF499RKL, ENCFF799EWO, ENCFF956QBZ 1021633939 ENCODE Processing Pipeline 94c66acdefeec36feb97862ba9486e23 https://www.encodeproject.org/files/ENCFF226MDY/@@download/ENCFF226MDY.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF615TYT bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF017YFK, ENCFF499RKL, ENCFF799EWO, ENCFF956QBZ 847951546 ENCODE Processing Pipeline 1b673969ffd027f1f6ea402985129ac8 https://www.encodeproject.org/files/ENCFF615TYT/@@download/ENCFF615TYT.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF214FTU bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF499RKL, ENCFF956QBZ 4725461 ENCODE Processing Pipeline 32ae8d996cc5d1ecfae20a133d10971d https://www.encodeproject.org/files/ENCFF214FTU/@@download/ENCFF214FTU.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF667NAB bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF214FTU 10946349 ENCODE Processing Pipeline 955d385bb7175d0f840c5e3bea8fb202 https://www.encodeproject.org/files/ENCFF667NAB/@@download/ENCFF667NAB.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF916HRC bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF017YFK, ENCFF499RKL, ENCFF799EWO, ENCFF956QBZ 5910562 ENCODE Processing Pipeline 1a20371b38e1e4c26ac6a4e0351d8f6c https://www.encodeproject.org/files/ENCFF916HRC/@@download/ENCFF916HRC.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF176ZHK bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF916HRC 11553170 ENCODE Processing Pipeline c0d13179bf4a13b2858284af8dff410d https://www.encodeproject.org/files/ENCFF176ZHK/@@download/ENCFF176ZHK.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF142NKY bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF799EWO 4723720 ENCODE Processing Pipeline 6214e16ca81f3b2d968f7a7bd1723571 https://www.encodeproject.org/files/ENCFF142NKY/@@download/ENCFF142NKY.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF937HMW bigBed narrowPeak optimal idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF431CEH 270496 ENCODE Processing Pipeline a8ed8ab01b5a94b2eee7456e7bf111b0 https://www.encodeproject.org/files/ENCFF937HMW/@@download/ENCFF937HMW.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF169HZV bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF142NKY 11117143 ENCODE Processing Pipeline 581f2d1a4b9cd66be69cbf95404c5d3b https://www.encodeproject.org/files/ENCFF169HZV/@@download/ENCFF169HZV.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF925BBW bigBed narrowPeak conservative idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF206NAC 230721 ENCODE Processing Pipeline 0af43cb303629d02bfa3cc77b49cd2f7 https://www.encodeproject.org/files/ENCFF925BBW/@@download/ENCFF925BBW.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF206NAC bed narrowPeak conservative idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF001TDO, ENCFF142NKY, ENCFF214FTU, ENCFF916HRC 109874 ENCODE Processing Pipeline 9c752db50a48263564c4783948270118 https://www.encodeproject.org/files/ENCFF206NAC/@@download/ENCFF206NAC.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF431CEH bed narrowPeak optimal idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF001TDO, ENCFF142NKY, ENCFF214FTU, ENCFF916HRC 139075 ENCODE Processing Pipeline 28fb1d0f3e4fa242a8e3be631f12ab66 https://www.encodeproject.org/files/ENCFF431CEH/@@download/ENCFF431CEH.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF986KEK fastq reads ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 1 50 single-ended 856236553 Richard Myers, HAIB e0831568ddcc307c2f3114025318c62a SRA:SRR5331562 https://www.encodeproject.org/files/ENCFF986KEK/@@download/ENCFF986KEK.fastq.gz Illumina HiSeq 2000 /files/ENCFF252PYF/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF647APA fastq reads ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 1 50 single-ended 1055296765 Richard Myers, HAIB c9c2ea77bb031b70d6d7dea6c3b36dbd SRA:SRR5331563 https://www.encodeproject.org/files/ENCFF647APA/@@download/ENCFF647APA.fastq.gz Illumina HiSeq 2000 /files/ENCFF484RXR/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF964YHS bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF807MUK, ENCFF986KEK 768291967 ENCODE Processing Pipeline ca9028d9e8a6f93d2e00fa1436349d5e https://www.encodeproject.org/files/ENCFF964YHS/@@download/ENCFF964YHS.bam hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF654GAA bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF647APA, ENCFF807MUK 973545935 ENCODE Processing Pipeline 9b59112807ab44ae5bcb159edc9c7637 https://www.encodeproject.org/files/ENCFF654GAA/@@download/ENCFF654GAA.bam hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF392ILP bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF654GAA 503608687 ENCODE Processing Pipeline 5530108173fd4138e323a19eb36f526d https://www.encodeproject.org/files/ENCFF392ILP/@@download/ENCFF392ILP.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF974GFI bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF956QBZ, ENCFF964YHS 517604123 ENCODE Processing Pipeline cc7e8cdc7081a9cd7c1e58de01d99347 https://www.encodeproject.org/files/ENCFF974GFI/@@download/ENCFF974GFI.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF010EQD bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF017YFK, ENCFF654GAA, ENCFF956QBZ, ENCFF964YHS 1025928692 ENCODE Processing Pipeline 4cfa567c7e909ce5ed17bdd20df6c52a https://www.encodeproject.org/files/ENCFF010EQD/@@download/ENCFF010EQD.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF233HLR bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF654GAA 424638170 ENCODE Processing Pipeline ae306c80ef11f8775b4f329e580f3361 https://www.encodeproject.org/files/ENCFF233HLR/@@download/ENCFF233HLR.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF288ABD bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF956QBZ, ENCFF964YHS 345983568 ENCODE Processing Pipeline b9eb18e6ec4edee284534bb319dbcbd3 https://www.encodeproject.org/files/ENCFF288ABD/@@download/ENCFF288ABD.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF587SQF bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF017YFK, ENCFF654GAA, ENCFF956QBZ, ENCFF964YHS 837791304 ENCODE Processing Pipeline 0791f7ca168b577cce268619d291c8ef https://www.encodeproject.org/files/ENCFF587SQF/@@download/ENCFF587SQF.bigWig hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF969HTA bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF654GAA 4919201 ENCODE Processing Pipeline a6c06e33ccec7b7897bd661361e841cf https://www.encodeproject.org/files/ENCFF969HTA/@@download/ENCFF969HTA.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF626GQM bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF598PVZ 11574581 ENCODE Processing Pipeline 0ebdf5b24be8cac452bae27140ac88b2 https://www.encodeproject.org/files/ENCFF626GQM/@@download/ENCFF626GQM.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF534BVF bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF969HTA 11268810 ENCODE Processing Pipeline eee7d5bfe215e804be0885999192d248 https://www.encodeproject.org/files/ENCFF534BVF/@@download/ENCFF534BVF.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF718TIR bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF132GYY 11134682 ENCODE Processing Pipeline 3676cf80e7e3ac58d6a72bbbc0c8e67c https://www.encodeproject.org/files/ENCFF718TIR/@@download/ENCFF718TIR.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF132GYY bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF956QBZ, ENCFF964YHS 4917436 ENCODE Processing Pipeline e365c57b89ba2e09737b2f7fd3299a31 https://www.encodeproject.org/files/ENCFF132GYY/@@download/ENCFF132GYY.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF598PVZ bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF017YFK, ENCFF654GAA, ENCFF956QBZ, ENCFF964YHS 6121024 ENCODE Processing Pipeline baff9b7f0ce2d2ccc753f7a5c7f6684a https://www.encodeproject.org/files/ENCFF598PVZ/@@download/ENCFF598PVZ.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF816KPQ bam unfiltered alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF643CGH, ENCFF986KEK 985374580 ENCODE Processing Pipeline 32c765f4f2ed5db7b9a0078f1a9610be https://www.encodeproject.org/files/ENCFF816KPQ/@@download/ENCFF816KPQ.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF624WCF bam unfiltered alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF643CGH, ENCFF647APA 1214394790 ENCODE Processing Pipeline 0e67fa6108e5d61979f82d3239cf3415 https://www.encodeproject.org/files/ENCFF624WCF/@@download/ENCFF624WCF.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF582ZOC bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF643CGH, ENCFF986KEK 768141068 ENCODE Processing Pipeline 6c98000f6e16138e45932e941985a4c4 https://www.encodeproject.org/files/ENCFF582ZOC/@@download/ENCFF582ZOC.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF720OTS bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF643CGH, ENCFF647APA 973458834 ENCODE Processing Pipeline db339a288ebd87476cee2a77d5b78c6c https://www.encodeproject.org/files/ENCFF720OTS/@@download/ENCFF720OTS.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF758PON bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF720OTS, ENCFF982GQU 534605745 ENCODE Processing Pipeline 681840ae21a9ade58f1180fc51be79b1 https://www.encodeproject.org/files/ENCFF758PON/@@download/ENCFF758PON.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF656IGP bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF341IVK, ENCFF582ZOC 427454624 ENCODE Processing Pipeline 1e5eabb8f8a551686e01121af32642a9 https://www.encodeproject.org/files/ENCFF656IGP/@@download/ENCFF656IGP.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF276VXR bigWig signal p-value ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF341IVK, ENCFF582ZOC, ENCFF720OTS, ENCFF982GQU 896117014 ENCODE Processing Pipeline e4038fd72cf53e794589b96a2cfb16e7 https://www.encodeproject.org/files/ENCFF276VXR/@@download/ENCFF276VXR.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF732CMZ bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF720OTS, ENCFF982GQU 432158438 ENCODE Processing Pipeline ad8f42f917cf8a09426b15d1e506767b https://www.encodeproject.org/files/ENCFF732CMZ/@@download/ENCFF732CMZ.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF436BLC bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF341IVK, ENCFF582ZOC 336422787 ENCODE Processing Pipeline 2fade47700943b5a9c799dea0fefefcc https://www.encodeproject.org/files/ENCFF436BLC/@@download/ENCFF436BLC.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF058VKQ bigWig fold change over control ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF341IVK, ENCFF582ZOC, ENCFF720OTS, ENCFF982GQU 839354112 ENCODE Processing Pipeline df9df73b9907a691c310365f8d34e085 https://www.encodeproject.org/files/ENCFF058VKQ/@@download/ENCFF058VKQ.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF637CFC bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF720OTS, ENCFF982GQU 4692517 ENCODE Processing Pipeline 0b80fdc3ab52cda7538225b4ab2198e8 https://www.encodeproject.org/files/ENCFF637CFC/@@download/ENCFF637CFC.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF571PCH bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF341IVK, ENCFF582ZOC 4679404 ENCODE Processing Pipeline 76c7eb257a8cb8b15545be3b86e73da0 https://www.encodeproject.org/files/ENCFF571PCH/@@download/ENCFF571PCH.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF214WRX bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF637CFC 11122564 ENCODE Processing Pipeline 09f94749c3d8e4e5689d88e634ce1519 https://www.encodeproject.org/files/ENCFF214WRX/@@download/ENCFF214WRX.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF774BKW bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF341IVK, ENCFF582ZOC, ENCFF720OTS, ENCFF982GQU 5861943 ENCODE Processing Pipeline dc946900afd0009f54100e2c6ae3dc3c https://www.encodeproject.org/files/ENCFF774BKW/@@download/ENCFF774BKW.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF423PMS bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF571PCH 10902736 ENCODE Processing Pipeline a3ec5cf20059d2b601d7496f3307429c https://www.encodeproject.org/files/ENCFF423PMS/@@download/ENCFF423PMS.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF425KXW bed narrowPeak optimal idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF571PCH, ENCFF637CFC, ENCFF774BKW 107304 ENCODE Processing Pipeline 912dca14d06c3859fc66f1a5783e5047 https://www.encodeproject.org/files/ENCFF425KXW/@@download/ENCFF425KXW.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF726DRN bigBed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF774BKW 11553721 ENCODE Processing Pipeline e4479796431810d965d1fe0e6dde03cb https://www.encodeproject.org/files/ENCFF726DRN/@@download/ENCFF726DRN.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF497JBZ bigBed narrowPeak optimal idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF425KXW 228144 ENCODE Processing Pipeline 61ac6299a442f816da06c0d25e29aa1e https://www.encodeproject.org/files/ENCFF497JBZ/@@download/ENCFF497JBZ.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF046WLI bed narrowPeak optimal idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF001TDO, ENCFF132GYY, ENCFF598PVZ, ENCFF969HTA 118721 ENCODE Processing Pipeline f6ed66919a91beb16dcee1ffdd1e497e https://www.encodeproject.org/files/ENCFF046WLI/@@download/ENCFF046WLI.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF857YPI bed narrowPeak conservative idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF001TDO, ENCFF132GYY, ENCFF598PVZ, ENCFF969HTA 94674 ENCODE Processing Pipeline 8a4beb666a6c5a81d045412005e0c311 https://www.encodeproject.org/files/ENCFF857YPI/@@download/ENCFF857YPI.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF574CLO bigBed narrowPeak conservative idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF857YPI 210012 ENCODE Processing Pipeline afc449e677bf74cb2eb6edc23a1d8a4c https://www.encodeproject.org/files/ENCFF574CLO/@@download/ENCFF574CLO.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF711NGY bigBed narrowPeak optimal idr thresholded peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1, 2 ENCFF046WLI 241995 ENCODE Processing Pipeline c4c07192ec7d6ef59170d133016b3322 https://www.encodeproject.org/files/ENCFF711NGY/@@download/ENCFF711NGY.bigBed hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF786REQ fastq reads ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF575PJE 2598424065 Michael Snyder, Stanford 943ae36370119c9113af9393745a2d24 SRA:SRR6212592 https://www.encodeproject.org/files/ENCFF786REQ/@@download/ENCFF786REQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF696VRU fastq reads ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF919JNL 2320990082 Michael Snyder, Stanford 93d18788904d041193e0d5ca9bb9f5c6 SRA:SRR6212591 https://www.encodeproject.org/files/ENCFF696VRU/@@download/ENCFF696VRU.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF575PJE fastq reads ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF786REQ 3159230750 Michael Snyder, Stanford db6cc1c484c64db93860601e0e90dda8 SRA:SRR6212592 https://www.encodeproject.org/files/ENCFF575PJE/@@download/ENCFF575PJE.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF919JNL fastq reads ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF696VRU 2874676391 Michael Snyder, Stanford 057c0d75ab410813362b343a689b4467 SRA:SRR6212591 https://www.encodeproject.org/files/ENCFF919JNL/@@download/ENCFF919JNL.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF974OGW bam unfiltered alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF696VRU, ENCFF807MUK, ENCFF919JNL 5359566854 ENCODE Processing Pipeline 9caf3b16646b6faff66ffe99f829cd64 https://www.encodeproject.org/files/ENCFF974OGW/@@download/ENCFF974OGW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF272PFF bam unfiltered alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF575PJE, ENCFF786REQ, ENCFF807MUK 5817596186 ENCODE Processing Pipeline ff0031478a38f01a3ffda262ac04bf04 https://www.encodeproject.org/files/ENCFF272PFF/@@download/ENCFF272PFF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF249IDP bam unfiltered alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF643CGH, ENCFF696VRU, ENCFF919JNL 5370892915 ENCODE Processing Pipeline 324ecd77ada5661a5fdb46c4bdf5636c https://www.encodeproject.org/files/ENCFF249IDP/@@download/ENCFF249IDP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF328JMC bam unfiltered alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF575PJE, ENCFF643CGH, ENCFF786REQ 5830253949 ENCODE Processing Pipeline 592ea841ce458b1afd88bc37a1e56901 https://www.encodeproject.org/files/ENCFF328JMC/@@download/ENCFF328JMC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF894WCT bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF575PJE, ENCFF786REQ, ENCFF807MUK 4748384343 ENCODE Processing Pipeline 1f2c3b6ada538f77531058b6b035cb79 https://www.encodeproject.org/files/ENCFF894WCT/@@download/ENCFF894WCT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF559RLP bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF696VRU, ENCFF807MUK, ENCFF919JNL 4293304021 ENCODE Processing Pipeline c0652bb3e60e6af7855d9a3d50fb21f0 https://www.encodeproject.org/files/ENCFF559RLP/@@download/ENCFF559RLP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF107MGS bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF643CGH, ENCFF696VRU, ENCFF919JNL 4296048590 ENCODE Processing Pipeline 9035e6a7ba0b6f8aac5cfac25e34f572 https://www.encodeproject.org/files/ENCFF107MGS/@@download/ENCFF107MGS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF215EXX bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF575PJE, ENCFF643CGH, ENCFF786REQ 4751154386 ENCODE Processing Pipeline 83a014df188673bc9d1382876e880cd6 https://www.encodeproject.org/files/ENCFF215EXX/@@download/ENCFF215EXX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF025RWF bigWig signal p-value ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF215EXX, ENCFF810LLR 1495003490 ENCODE Processing Pipeline 7c919d16179e0d3cd929875ab2663a17 https://www.encodeproject.org/files/ENCFF025RWF/@@download/ENCFF025RWF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF482SBM bigWig signal p-value ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF107MGS, ENCFF810LLR 1411254191 ENCODE Processing Pipeline eca8aa72db443c6689584e68cc4331b2 https://www.encodeproject.org/files/ENCFF482SBM/@@download/ENCFF482SBM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF959XGH bigWig signal p-value ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF107MGS, ENCFF215EXX, ENCFF810LLR 1979451257 ENCODE Processing Pipeline cc4f20a0c2a1d488a55b4d9c69fa2920 https://www.encodeproject.org/files/ENCFF959XGH/@@download/ENCFF959XGH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF947MAQ bigWig signal p-value ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF559RLP, ENCFF894WCT 1959275954 ENCODE Processing Pipeline 188092adac9876ad1e4236db7533d28b https://www.encodeproject.org/files/ENCFF947MAQ/@@download/ENCFF947MAQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF774PUT bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF107MGS, ENCFF215EXX, ENCFF810LLR 7258549 ENCODE Processing Pipeline e71ea28e7c83504219e089142864ea71 https://www.encodeproject.org/files/ENCFF774PUT/@@download/ENCFF774PUT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF800BER bigWig fold change over control ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF215EXX, ENCFF810LLR 1676761708 ENCODE Processing Pipeline 66bf444aeebe54336a5e249e0167a9d1 https://www.encodeproject.org/files/ENCFF800BER/@@download/ENCFF800BER.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF880YEF bigWig signal p-value ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF894WCT 1637863723 ENCODE Processing Pipeline 268c405ec49c3c9444693a202e511061 https://www.encodeproject.org/files/ENCFF880YEF/@@download/ENCFF880YEF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF536ZFY bigWig signal p-value ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF559RLP 1283979051 ENCODE Processing Pipeline 01f5adecb9bbd6daab656ad1fa5aa1c9 https://www.encodeproject.org/files/ENCFF536ZFY/@@download/ENCFF536ZFY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF281OTZ bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF215EXX, ENCFF810LLR 6639040 ENCODE Processing Pipeline 58da7d55c30a8490e5fbd27734ee578e https://www.encodeproject.org/files/ENCFF281OTZ/@@download/ENCFF281OTZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF225RJA bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF107MGS, ENCFF810LLR 6488217 ENCODE Processing Pipeline 1e2eb0c7df290230ee553799b013f7ad https://www.encodeproject.org/files/ENCFF225RJA/@@download/ENCFF225RJA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF700VTB bigBed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF281OTZ 11101969 ENCODE Processing Pipeline a2e4d5d833adccce839f9200a806ba23 https://www.encodeproject.org/files/ENCFF700VTB/@@download/ENCFF700VTB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF244ROT bigWig fold change over control ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF107MGS, ENCFF810LLR 1515427382 ENCODE Processing Pipeline 8109c632a2f017fca34be58c01b8194e https://www.encodeproject.org/files/ENCFF244ROT/@@download/ENCFF244ROT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF442VDW bigBed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF774PUT 11282854 ENCODE Processing Pipeline 1f14c441404de24299ba2b8e9a75dcaf https://www.encodeproject.org/files/ENCFF442VDW/@@download/ENCFF442VDW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF496QBL bigBed narrowPeak conservative idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF822HZV 87590 ENCODE Processing Pipeline cc2ae4549e09be99589067230a59c7db https://www.encodeproject.org/files/ENCFF496QBL/@@download/ENCFF496QBL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF120RYS bigWig fold change over control ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF559RLP 1552382307 ENCODE Processing Pipeline 1a4ec8d76818805ab695795ebdbf27aa https://www.encodeproject.org/files/ENCFF120RYS/@@download/ENCFF120RYS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF051KWV bigWig fold change over control ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF107MGS, ENCFF215EXX, ENCFF810LLR 2224582787 ENCODE Processing Pipeline e65fc0e4234c9e82f1057362b5e2c736 https://www.encodeproject.org/files/ENCFF051KWV/@@download/ENCFF051KWV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF822HZV bed narrowPeak conservative idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF225RJA, ENCFF281OTZ, ENCFF419RSJ, ENCFF774PUT 20085 ENCODE Processing Pipeline 2bc724bb26404135ebf30ae80053441f https://www.encodeproject.org/files/ENCFF822HZV/@@download/ENCFF822HZV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF080CMZ bigWig fold change over control ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF559RLP, ENCFF894WCT 2194953874 ENCODE Processing Pipeline e52a3e8c7f7d1206b30cfa44836c3901 https://www.encodeproject.org/files/ENCFF080CMZ/@@download/ENCFF080CMZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF471BGN bed narrowPeak optimal idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF225RJA, ENCFF281OTZ, ENCFF419RSJ, ENCFF774PUT 30335 ENCODE Processing Pipeline c374931dba47f6cb741de7789a9e50d0 https://www.encodeproject.org/files/ENCFF471BGN/@@download/ENCFF471BGN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF992FIX bigBed narrowPeak optimal idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF471BGN 103385 ENCODE Processing Pipeline 8da349f99f84d3897941459e2cbc892e https://www.encodeproject.org/files/ENCFF992FIX/@@download/ENCFF992FIX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF291TVB bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF894WCT 6632863 ENCODE Processing Pipeline 57d8154f0340c4642afeb2302344b96c https://www.encodeproject.org/files/ENCFF291TVB/@@download/ENCFF291TVB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF794YKR bigBed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF225RJA 11163627 ENCODE Processing Pipeline b378f810dd6cf9a9dff899463c722df9 https://www.encodeproject.org/files/ENCFF794YKR/@@download/ENCFF794YKR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF970TDR bigWig fold change over control ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF894WCT 1671030752 ENCODE Processing Pipeline 560b78bf40d536dda0a3fcef51285dd2 https://www.encodeproject.org/files/ENCFF970TDR/@@download/ENCFF970TDR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF735NBF bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF559RLP 6483614 ENCODE Processing Pipeline 324f1b53f8ee7e59ecc200634bde68fb https://www.encodeproject.org/files/ENCFF735NBF/@@download/ENCFF735NBF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF758JLU bed narrowPeak conservative idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF291TVB, ENCFF320XKF, ENCFF735NBF 18964 ENCODE Processing Pipeline 86ea983329c229455c375e5d1395e1a8 https://www.encodeproject.org/files/ENCFF758JLU/@@download/ENCFF758JLU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF256LPL bed narrowPeak optimal idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF291TVB, ENCFF320XKF, ENCFF735NBF 30356 ENCODE Processing Pipeline d47e85cbf1e485f349de3ad45562a9e5 https://www.encodeproject.org/files/ENCFF256LPL/@@download/ENCFF256LPL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF470CNL bigBed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF291TVB 11081701 ENCODE Processing Pipeline c74e1d00cbdfd363588e10ad3cc885ca https://www.encodeproject.org/files/ENCFF470CNL/@@download/ENCFF470CNL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF320XKF bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF559RLP, ENCFF894WCT 7251209 ENCODE Processing Pipeline f801680ddc14000911e51d4150e5170e https://www.encodeproject.org/files/ENCFF320XKF/@@download/ENCFF320XKF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF705VKW bigBed narrowPeak conservative idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF758JLU 83661 ENCODE Processing Pipeline 1f25f6bc77eefaab871b18e2efbcd7ff https://www.encodeproject.org/files/ENCFF705VKW/@@download/ENCFF705VKW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF199QBM bigBed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF735NBF 11149351 ENCODE Processing Pipeline 5c5d55c3bcc9b60c9ac3ab049bfb429d https://www.encodeproject.org/files/ENCFF199QBM/@@download/ENCFF199QBM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF915QSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF256LPL 101045 ENCODE Processing Pipeline 474b1e970120a117dd2524c5906fc107 https://www.encodeproject.org/files/ENCFF915QSZ/@@download/ENCFF915QSZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF120NLE bigBed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF320XKF 11278754 ENCODE Processing Pipeline 76abaaf724db77f43a86523cc5e27848 https://www.encodeproject.org/files/ENCFF120NLE/@@download/ENCFF120NLE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF727LAN bam unfiltered alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 100 ENCFF358LFL, ENCFF575GFV, ENCFF807MUK 5687572355 ENCODE Processing Pipeline d0741c826afac6b439b53ed47fe92ac1 https://www.encodeproject.org/files/ENCFF727LAN/@@download/ENCFF727LAN.bam hg19 released ENCFF270BER bam unfiltered alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 100 ENCFF197EBM, ENCFF277SWU, ENCFF807MUK 4571640428 ENCODE Processing Pipeline 0123c976072eb505e70a8285f94eb142 https://www.encodeproject.org/files/ENCFF270BER/@@download/ENCFF270BER.bam hg19 released ENCFF575GFV fastq reads ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 1 100 paired-ended 2 ENCFF358LFL 2592206982 Michael Snyder, Stanford 06b1c04eff54a616cd5900e29a43875c SRA:SRR5111100 https://www.encodeproject.org/files/ENCFF575GFV/@@download/ENCFF575GFV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF277SWU fastq reads ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 1 100 paired-ended 1 ENCFF197EBM 2035922789 Michael Snyder, Stanford a724ca1dfa744ffd4100f4bcddf22283 SRA:SRR5111099 https://www.encodeproject.org/files/ENCFF277SWU/@@download/ENCFF277SWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF358LFL fastq reads ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 1 100 paired-ended 1 ENCFF575GFV 2559517993 Michael Snyder, Stanford 7b2d76489b47d55831eb2c7d01810fe5 SRA:SRR5111100 https://www.encodeproject.org/files/ENCFF358LFL/@@download/ENCFF358LFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF197EBM fastq reads ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 1 100 paired-ended 2 ENCFF277SWU 2064598172 Michael Snyder, Stanford e0bbe8bafdfda55197fbb6608d9db3b2 SRA:SRR5111099 https://www.encodeproject.org/files/ENCFF197EBM/@@download/ENCFF197EBM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF452QYJ bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 100 ENCFF197EBM, ENCFF277SWU, ENCFF807MUK 3816720304 ENCODE Processing Pipeline b2435fb86932560dce524e162a73b8f3 https://www.encodeproject.org/files/ENCFF452QYJ/@@download/ENCFF452QYJ.bam hg19 released ENCFF474PWT bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 100 ENCFF358LFL, ENCFF575GFV, ENCFF807MUK 4732813602 ENCODE Processing Pipeline 332c532dda2f524a2176115778fbf574 https://www.encodeproject.org/files/ENCFF474PWT/@@download/ENCFF474PWT.bam hg19 released ENCFF421TRB bigWig signal p-value ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF474PWT, ENCFF581ZJL 1132952304 ENCODE Processing Pipeline 516cb24080ad77459b9a7764c2358e8d https://www.encodeproject.org/files/ENCFF421TRB/@@download/ENCFF421TRB.bigWig hg19 released ENCFF438OQD bigWig signal p-value ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF051LWI, ENCFF452QYJ 962564084 ENCODE Processing Pipeline cb2c326e237eecc143f9f85d31593ea8 https://www.encodeproject.org/files/ENCFF438OQD/@@download/ENCFF438OQD.bigWig hg19 released ENCFF800MTY bigWig signal p-value ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF051LWI, ENCFF452QYJ, ENCFF474PWT, ENCFF581ZJL 1801084376 ENCODE Processing Pipeline 9aa3e9aa754f9c4c9d6e1065e3ac1701 https://www.encodeproject.org/files/ENCFF800MTY/@@download/ENCFF800MTY.bigWig hg19 released ENCFF270EGY bigWig fold change over control ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF474PWT, ENCFF581ZJL 1268889959 ENCODE Processing Pipeline 88d88fcfdcf4638ce119089fbda85ee9 https://www.encodeproject.org/files/ENCFF270EGY/@@download/ENCFF270EGY.bigWig hg19 released ENCFF379IHO bigWig fold change over control ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF051LWI, ENCFF452QYJ 1082788951 ENCODE Processing Pipeline 6884746a7a14f5d38d26972dcf2b6b69 https://www.encodeproject.org/files/ENCFF379IHO/@@download/ENCFF379IHO.bigWig hg19 released ENCFF906FIL bigWig fold change over control ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF051LWI, ENCFF452QYJ, ENCFF474PWT, ENCFF581ZJL 2101478825 ENCODE Processing Pipeline 5c0b04ad90e60f11a7e2e2dce5e42ee9 https://www.encodeproject.org/files/ENCFF906FIL/@@download/ENCFF906FIL.bigWig hg19 released ENCFF804ZDO bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF474PWT, ENCFF581ZJL 6601859 ENCODE Processing Pipeline 422447557aaa8aeac1f203d11e682a59 https://www.encodeproject.org/files/ENCFF804ZDO/@@download/ENCFF804ZDO.bed.gz hg19 released ENCFF666TVL bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF051LWI, ENCFF452QYJ 6573285 ENCODE Processing Pipeline da592a6f1324752fe87aee24fb491ba2 https://www.encodeproject.org/files/ENCFF666TVL/@@download/ENCFF666TVL.bed.gz hg19 released ENCFF889VXE bigBed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF804ZDO 11062806 ENCODE Processing Pipeline 85c571e43bb88131e87fee4f696ae6a1 https://www.encodeproject.org/files/ENCFF889VXE/@@download/ENCFF889VXE.bigBed hg19 released ENCFF297LLA bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF051LWI, ENCFF452QYJ, ENCFF474PWT, ENCFF581ZJL 7182008 ENCODE Processing Pipeline 3c276986e7119a604cfce800230a06fb https://www.encodeproject.org/files/ENCFF297LLA/@@download/ENCFF297LLA.bed.gz hg19 released ENCFF091IKJ bigBed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF666TVL 13230539 ENCODE Processing Pipeline 57f2e2ed12333a2d3b635be96f11cea8 https://www.encodeproject.org/files/ENCFF091IKJ/@@download/ENCFF091IKJ.bigBed hg19 released ENCFF075EEO bigBed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF297LLA 13071391 ENCODE Processing Pipeline c30eae40d7a787c5df5527c45624117d https://www.encodeproject.org/files/ENCFF075EEO/@@download/ENCFF075EEO.bigBed hg19 released ENCFF015PTS bed narrowPeak conservative idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF001TDO, ENCFF297LLA, ENCFF666TVL, ENCFF804ZDO 70197 ENCODE Processing Pipeline 413513dd7b67ac322964e26d032b4055 https://www.encodeproject.org/files/ENCFF015PTS/@@download/ENCFF015PTS.bed.gz hg19 released ENCFF382EED bigBed narrowPeak conservative idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF015PTS 190343 ENCODE Processing Pipeline b30af890964b2b447fa4504b9f063c4b https://www.encodeproject.org/files/ENCFF382EED/@@download/ENCFF382EED.bigBed hg19 released ENCFF986MHU bed narrowPeak optimal idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF001TDO, ENCFF297LLA, ENCFF666TVL, ENCFF804ZDO 116563 ENCODE Processing Pipeline a5428ff5fcb7004b76804e57d613d5fd https://www.encodeproject.org/files/ENCFF986MHU/@@download/ENCFF986MHU.bed.gz hg19 released ENCFF751JXD bigBed narrowPeak optimal idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF986MHU 262140 ENCODE Processing Pipeline 8df837d1bb7c8421836a3dde1687ef0a https://www.encodeproject.org/files/ENCFF751JXD/@@download/ENCFF751JXD.bigBed hg19 released ENCFF484ZNM bam unfiltered alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 100 ENCFF197EBM, ENCFF277SWU, ENCFF643CGH 4575634391 ENCODE Processing Pipeline b76296e717da49dbdd35b576d856651b https://www.encodeproject.org/files/ENCFF484ZNM/@@download/ENCFF484ZNM.bam GRCh38 released ENCFF390DUS bam unfiltered alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 100 ENCFF358LFL, ENCFF575GFV, ENCFF643CGH 5693252660 ENCODE Processing Pipeline ad9970a047787ac2072bbda44a99afc5 https://www.encodeproject.org/files/ENCFF390DUS/@@download/ENCFF390DUS.bam GRCh38 released ENCFF833ZOK bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 100 ENCFF197EBM, ENCFF277SWU, ENCFF643CGH 3819427161 ENCODE Processing Pipeline a0781964e825d8d9425d0b129a08a8a4 https://www.encodeproject.org/files/ENCFF833ZOK/@@download/ENCFF833ZOK.bam GRCh38 released ENCFF318SPV bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 100 ENCFF358LFL, ENCFF575GFV, ENCFF643CGH 4736350660 ENCODE Processing Pipeline 78751ed967ed07e4cd0b93129012f967 https://www.encodeproject.org/files/ENCFF318SPV/@@download/ENCFF318SPV.bam GRCh38 released ENCFF713FGJ bigWig signal p-value ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF318SPV, ENCFF910IKB 1254326831 ENCODE Processing Pipeline eb9f6e45e79d616123208d941fa6144c https://www.encodeproject.org/files/ENCFF713FGJ/@@download/ENCFF713FGJ.bigWig GRCh38 released ENCFF400AJJ bigWig signal p-value ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF227IZS, ENCFF833ZOK 946002470 ENCODE Processing Pipeline 3b54aabdda27f2039aa91ec79a84ef41 https://www.encodeproject.org/files/ENCFF400AJJ/@@download/ENCFF400AJJ.bigWig GRCh38 released ENCFF443INP bigWig signal p-value ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF227IZS, ENCFF318SPV, ENCFF833ZOK, ENCFF910IKB 1797619064 ENCODE Processing Pipeline 1cdcb4ce174ea10bcbfdc95937944c2e https://www.encodeproject.org/files/ENCFF443INP/@@download/ENCFF443INP.bigWig GRCh38 released ENCFF182AYT bigWig fold change over control ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF318SPV, ENCFF910IKB 1265448134 ENCODE Processing Pipeline 4262ff6bbf023f0417ec64b03c2473a6 https://www.encodeproject.org/files/ENCFF182AYT/@@download/ENCFF182AYT.bigWig GRCh38 released ENCFF562HFT bigWig fold change over control ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF227IZS, ENCFF833ZOK 1083363397 ENCODE Processing Pipeline 3ef41513296ca91e62469ad8f5c1a857 https://www.encodeproject.org/files/ENCFF562HFT/@@download/ENCFF562HFT.bigWig GRCh38 released ENCFF302PLG bigWig fold change over control ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF227IZS, ENCFF318SPV, ENCFF833ZOK, ENCFF910IKB 2068321061 ENCODE Processing Pipeline ae1eafd6969201a3db0addb07dd36be6 https://www.encodeproject.org/files/ENCFF302PLG/@@download/ENCFF302PLG.bigWig GRCh38 released ENCFF697UPK bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF318SPV, ENCFF910IKB 6470064 ENCODE Processing Pipeline cabdf25c8664d4b276e9a4d74a15582f https://www.encodeproject.org/files/ENCFF697UPK/@@download/ENCFF697UPK.bed.gz GRCh38 released ENCFF734RJI bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF227IZS, ENCFF833ZOK 6446115 ENCODE Processing Pipeline f65c21e8321457a36cd195892b87859b https://www.encodeproject.org/files/ENCFF734RJI/@@download/ENCFF734RJI.bed.gz GRCh38 released ENCFF270BVJ bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF227IZS, ENCFF318SPV, ENCFF833ZOK, ENCFF910IKB 7153186 ENCODE Processing Pipeline b7c5779df2a501f9b00886dad5492d5e https://www.encodeproject.org/files/ENCFF270BVJ/@@download/ENCFF270BVJ.bed.gz GRCh38 released ENCFF026CPU bigBed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF697UPK 11078252 ENCODE Processing Pipeline 1fc1b8e7e178dc9a85d48e7b959e8750 https://www.encodeproject.org/files/ENCFF026CPU/@@download/ENCFF026CPU.bigBed GRCh38 released ENCFF358CZS bigBed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF734RJI 13231025 ENCODE Processing Pipeline 11391cd5e9662daca8d2a20cf208f1e5 https://www.encodeproject.org/files/ENCFF358CZS/@@download/ENCFF358CZS.bigBed GRCh38 released ENCFF195UXR bigBed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF270BVJ 13080653 ENCODE Processing Pipeline fa69bd55df079f57dd3e1d4c26316e44 https://www.encodeproject.org/files/ENCFF195UXR/@@download/ENCFF195UXR.bigBed GRCh38 released ENCFF408CMK bed narrowPeak conservative idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF270BVJ, ENCFF419RSJ, ENCFF697UPK, ENCFF734RJI 69195 ENCODE Processing Pipeline 444cf63da29da4f0c3fb90cfb12b82e3 https://www.encodeproject.org/files/ENCFF408CMK/@@download/ENCFF408CMK.bed.gz GRCh38 released ENCFF655ETV bigBed narrowPeak conservative idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF408CMK 189923 ENCODE Processing Pipeline 0601370e150c3de2362413d116f855a6 https://www.encodeproject.org/files/ENCFF655ETV/@@download/ENCFF655ETV.bigBed GRCh38 released ENCFF329STX bed narrowPeak optimal idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF270BVJ, ENCFF419RSJ, ENCFF697UPK, ENCFF734RJI 116079 ENCODE Processing Pipeline d1f2b121f7aa2350682803c87d5f63f2 https://www.encodeproject.org/files/ENCFF329STX/@@download/ENCFF329STX.bed.gz GRCh38 released ENCFF435ALE bigBed narrowPeak optimal idr thresholded peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF329STX 263245 ENCODE Processing Pipeline 6967fa2e4c9f6c42f2ef5b5fd6a3b4fe https://www.encodeproject.org/files/ENCFF435ALE/@@download/ENCFF435ALE.bigBed GRCh38 released ENCFF604MZQ fastq reads ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF271MIC 3938129664 Michael Snyder, Stanford d029ce2e564834fdf8a08d46a3cd1626 SRA:SRR6213076 https://www.encodeproject.org/files/ENCFF604MZQ/@@download/ENCFF604MZQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF795HIW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF271MIC fastq reads ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF604MZQ 3478405072 Michael Snyder, Stanford 36fe99572d1f0e6df3395b0ce2146560 SRA:SRR6213076 https://www.encodeproject.org/files/ENCFF271MIC/@@download/ENCFF271MIC.fastq.gz Illumina HiSeq 4000 /files/ENCFF065VOB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF044SHT bam unfiltered alignments ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF271MIC, ENCFF604MZQ, ENCFF643CGH 7086034802 ENCODE Processing Pipeline 5cdca5b64af1c1ff61fdabb922701a65 https://www.encodeproject.org/files/ENCFF044SHT/@@download/ENCFF044SHT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF831PRR bam unfiltered alignments ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF271MIC, ENCFF604MZQ, ENCFF807MUK 7081213090 ENCODE Processing Pipeline 469efcbb53f746c849fdae1c9e24c24e https://www.encodeproject.org/files/ENCFF831PRR/@@download/ENCFF831PRR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF516KHW bam alignments ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF271MIC, ENCFF604MZQ, ENCFF643CGH 3160611746 ENCODE Processing Pipeline ad380a1142123148029262bbc4a85525 https://www.encodeproject.org/files/ENCFF516KHW/@@download/ENCFF516KHW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF531FEB bam alignments ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF271MIC, ENCFF604MZQ, ENCFF807MUK 3155389925 ENCODE Processing Pipeline 72effb3689afbbca5dc8a25dcad6ebba https://www.encodeproject.org/files/ENCFF531FEB/@@download/ENCFF531FEB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF457PNO bigBed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF041YKU 11500957 ENCODE Processing Pipeline 411674a4646dd290f676a0b031e5c56c https://www.encodeproject.org/files/ENCFF457PNO/@@download/ENCFF457PNO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF722THT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF041YKU 326706 ENCODE Processing Pipeline 328ef659513e75ffb75fb59470c7708c https://www.encodeproject.org/files/ENCFF722THT/@@download/ENCFF722THT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF663JVM bigWig fold change over control ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF152VGP, ENCFF531FEB 1404890982 ENCODE Processing Pipeline efc851332e4267c71fbed263abe04e2c https://www.encodeproject.org/files/ENCFF663JVM/@@download/ENCFF663JVM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF566EID bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF722THT 622411 ENCODE Processing Pipeline 555683585e25fc84580b3c6b29c909c7 https://www.encodeproject.org/files/ENCFF566EID/@@download/ENCFF566EID.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF499EZR bigWig fold change over control ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF516KHW 1400639666 ENCODE Processing Pipeline adc844694224dbf76fb4e1ca1484edf0 https://www.encodeproject.org/files/ENCFF499EZR/@@download/ENCFF499EZR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF902GQO bigWig signal p-value ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF152VGP, ENCFF531FEB 1327506653 ENCODE Processing Pipeline a1b83914b323f7cec59dc36bbd564286 https://www.encodeproject.org/files/ENCFF902GQO/@@download/ENCFF902GQO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF426DIX bigWig signal p-value ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF516KHW 1251280083 ENCODE Processing Pipeline b0d133844bad95816a9a4c7bca66d6d9 https://www.encodeproject.org/files/ENCFF426DIX/@@download/ENCFF426DIX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF041YKU bed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF152VGP, ENCFF531FEB 6162798 ENCODE Processing Pipeline 95c7ae3bbbc4d9d94190649e99d2865d https://www.encodeproject.org/files/ENCFF041YKU/@@download/ENCFF041YKU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF739DVS bed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF516KHW 6159012 ENCODE Processing Pipeline a49cced375273818f6336005300a5c56 https://www.encodeproject.org/files/ENCFF739DVS/@@download/ENCFF739DVS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF226SYQ bigBed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF739DVS 11510945 ENCODE Processing Pipeline baf5e49698fb87455a39cd71f9692548 https://www.encodeproject.org/files/ENCFF226SYQ/@@download/ENCFF226SYQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF113XGW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF739DVS 324248 ENCODE Processing Pipeline 0d61c26f2937f581283f125fea049c3e https://www.encodeproject.org/files/ENCFF113XGW/@@download/ENCFF113XGW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF790DIT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF113XGW 620584 ENCODE Processing Pipeline e37e72fe982d278c1b5c37655e0f6e39 https://www.encodeproject.org/files/ENCFF790DIT/@@download/ENCFF790DIT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF546RYU fastq reads ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF881ACQ 2278953512 Michael Snyder, Stanford 4dfdddfe2f6e6760164ea78f1a3804b5 SRA:SRR6213124 https://www.encodeproject.org/files/ENCFF546RYU/@@download/ENCFF546RYU.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF881ACQ fastq reads ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF546RYU 2661271187 Michael Snyder, Stanford 315d1faaf85ce9b02cfc1837ac4dd2ed SRA:SRR6213124 https://www.encodeproject.org/files/ENCFF881ACQ/@@download/ENCFF881ACQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF274EIR fastq reads ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF951FWS 2389106325 Michael Snyder, Stanford 83c4cb0492c0379715daa9acc5edf2c5 SRA:SRR6213125 https://www.encodeproject.org/files/ENCFF274EIR/@@download/ENCFF274EIR.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF951FWS fastq reads ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF274EIR 2738613466 Michael Snyder, Stanford f15f173f4c36a618de40b023f22767ee SRA:SRR6213125 https://www.encodeproject.org/files/ENCFF951FWS/@@download/ENCFF951FWS.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF371UZI bam unfiltered alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF274EIR, ENCFF807MUK, ENCFF951FWS 5097961833 ENCODE Processing Pipeline f88dfa6816fb48d8eb4a084fe5639de5 https://www.encodeproject.org/files/ENCFF371UZI/@@download/ENCFF371UZI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF462YHB bam unfiltered alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF546RYU, ENCFF807MUK, ENCFF881ACQ 4910512804 ENCODE Processing Pipeline 29642a292b5191372945d20a1972e232 https://www.encodeproject.org/files/ENCFF462YHB/@@download/ENCFF462YHB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF337ZCY bam unfiltered alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF546RYU, ENCFF643CGH, ENCFF881ACQ 4923618954 ENCODE Processing Pipeline c6b6da0ef6a788da10bca5a719f605ff https://www.encodeproject.org/files/ENCFF337ZCY/@@download/ENCFF337ZCY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF388XZB bam unfiltered alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF274EIR, ENCFF643CGH, ENCFF951FWS 5111771982 ENCODE Processing Pipeline 598551577cb68f5134c3a0e2dc6e2b4b https://www.encodeproject.org/files/ENCFF388XZB/@@download/ENCFF388XZB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF825DAK bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF274EIR, ENCFF807MUK, ENCFF951FWS 4254063016 ENCODE Processing Pipeline ea52a4adab5c4fe86653ef76fca07023 https://www.encodeproject.org/files/ENCFF825DAK/@@download/ENCFF825DAK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF891FAJ bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF546RYU, ENCFF807MUK, ENCFF881ACQ 4047761506 ENCODE Processing Pipeline cf6fc4f384b705e4bf0b531b6f39143b https://www.encodeproject.org/files/ENCFF891FAJ/@@download/ENCFF891FAJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF186YOG bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF546RYU, ENCFF643CGH, ENCFF881ACQ 4052457997 ENCODE Processing Pipeline ce5535954d9c8cae80f664e988db76f7 https://www.encodeproject.org/files/ENCFF186YOG/@@download/ENCFF186YOG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF321NUU bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF274EIR, ENCFF643CGH, ENCFF951FWS 4259141458 ENCODE Processing Pipeline 66f73c15a88d0b6b487ee9acebd5d3fd https://www.encodeproject.org/files/ENCFF321NUU/@@download/ENCFF321NUU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF004DKO bigWig signal p-value ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF891FAJ 1627795830 ENCODE Processing Pipeline 259ff3662eb44b7362bac127a27b3c67 https://www.encodeproject.org/files/ENCFF004DKO/@@download/ENCFF004DKO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF458HZB bigWig signal p-value ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK 1588640538 ENCODE Processing Pipeline f1aaac00456d93619800ca31f422783a https://www.encodeproject.org/files/ENCFF458HZB/@@download/ENCFF458HZB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF770SFN bigWig signal p-value ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK, ENCFF891FAJ 1818830437 ENCODE Processing Pipeline cba5cb4fcaf59d4405bd4674aca548f1 https://www.encodeproject.org/files/ENCFF770SFN/@@download/ENCFF770SFN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF230ONU bigWig fold change over control ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF891FAJ 1672982154 ENCODE Processing Pipeline 91b12798a59b6c615344facbc3adba6a https://www.encodeproject.org/files/ENCFF230ONU/@@download/ENCFF230ONU.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF190XHP bigWig fold change over control ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK 1749979757 ENCODE Processing Pipeline 2a02d1ad81a687281288aa8b76ce5024 https://www.encodeproject.org/files/ENCFF190XHP/@@download/ENCFF190XHP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF506AQM bigWig fold change over control ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK, ENCFF891FAJ 2221515102 ENCODE Processing Pipeline 5bb916d87b68183f14e4eb03b7e67908 https://www.encodeproject.org/files/ENCFF506AQM/@@download/ENCFF506AQM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF447SAN bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF891FAJ 6712500 ENCODE Processing Pipeline a7548a30fb8493776cb82cc5dc6f7e59 https://www.encodeproject.org/files/ENCFF447SAN/@@download/ENCFF447SAN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF875DOP bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK 6703556 ENCODE Processing Pipeline cab2bab5d42e0c93b0d61ce1f20083b5 https://www.encodeproject.org/files/ENCFF875DOP/@@download/ENCFF875DOP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF842DAK bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK, ENCFF891FAJ 7151923 ENCODE Processing Pipeline 1ac28373dfc4039789ad6e9a57364348 https://www.encodeproject.org/files/ENCFF842DAK/@@download/ENCFF842DAK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF585MHF bigBed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF447SAN 11142345 ENCODE Processing Pipeline 1b98060f0da6de200465316bd3e128cf https://www.encodeproject.org/files/ENCFF585MHF/@@download/ENCFF585MHF.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF185RNG bigBed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF875DOP 11135772 ENCODE Processing Pipeline 55b2a106eb49b4511fd744e8c410e32a https://www.encodeproject.org/files/ENCFF185RNG/@@download/ENCFF185RNG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF163HQX bigBed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF842DAK 10953589 ENCODE Processing Pipeline c3a53cc44f23d937dd58b127d1ed9471 https://www.encodeproject.org/files/ENCFF163HQX/@@download/ENCFF163HQX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF238SQE bed narrowPeak conservative idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF447SAN, ENCFF842DAK, ENCFF875DOP 24900 ENCODE Processing Pipeline 5bb91cb81a7b0e0dec984259dfaeed01 https://www.encodeproject.org/files/ENCFF238SQE/@@download/ENCFF238SQE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF099HCL bigBed narrowPeak conservative idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF238SQE 115598 ENCODE Processing Pipeline eb5ff2620a5845baf58f166a477fe6d0 https://www.encodeproject.org/files/ENCFF099HCL/@@download/ENCFF099HCL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF839EPV bed narrowPeak optimal idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF447SAN, ENCFF842DAK, ENCFF875DOP 44419 ENCODE Processing Pipeline 2ab64fcc59001a92495fc446b93c8748 https://www.encodeproject.org/files/ENCFF839EPV/@@download/ENCFF839EPV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF718ZML bigBed narrowPeak optimal idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF839EPV 155922 ENCODE Processing Pipeline 3b679555c110d36a7a3ae839e64340e0 https://www.encodeproject.org/files/ENCFF718ZML/@@download/ENCFF718ZML.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF869FNE bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF186YOG, ENCFF191XYH, ENCFF746SKT 6718110 ENCODE Processing Pipeline cf83b361bf50f667ea725f75e82cff7f https://www.encodeproject.org/files/ENCFF869FNE/@@download/ENCFF869FNE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF174JIA bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF186YOG, ENCFF191XYH, ENCFF321NUU, ENCFF746SKT 7156336 ENCODE Processing Pipeline 3e492ff3084bed07aea386442cc5c9e8 https://www.encodeproject.org/files/ENCFF174JIA/@@download/ENCFF174JIA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF995OGF bigBed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF174JIA 10966636 ENCODE Processing Pipeline a65b6b70b739d420213c39def58ef14b https://www.encodeproject.org/files/ENCFF995OGF/@@download/ENCFF995OGF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF660IMA bed narrowPeak conservative idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF174JIA, ENCFF419RSJ, ENCFF612SEP, ENCFF869FNE 23609 ENCODE Processing Pipeline 96c23204f6fdd13a8f0ba8856f91140c https://www.encodeproject.org/files/ENCFF660IMA/@@download/ENCFF660IMA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF046HSS bigWig signal p-value ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF186YOG, ENCFF191XYH, ENCFF746SKT 1481278700 ENCODE Processing Pipeline a02fd38e4f1f5a541d7535851c925cf9 https://www.encodeproject.org/files/ENCFF046HSS/@@download/ENCFF046HSS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF884QIE bigWig fold change over control ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF186YOG, ENCFF191XYH, ENCFF321NUU, ENCFF746SKT 2260218507 ENCODE Processing Pipeline 69358555699bc84fd332220867bcdef6 https://www.encodeproject.org/files/ENCFF884QIE/@@download/ENCFF884QIE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF612SEP bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF321NUU, ENCFF746SKT 6706540 ENCODE Processing Pipeline 3f6ee59df46b7ebde214d20e017db499 https://www.encodeproject.org/files/ENCFF612SEP/@@download/ENCFF612SEP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF324UKW bigBed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF612SEP 11153204 ENCODE Processing Pipeline a065ac87b8e2c78aa253652de9dc1e4d https://www.encodeproject.org/files/ENCFF324UKW/@@download/ENCFF324UKW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF692GBR bigWig fold change over control ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF321NUU, ENCFF746SKT 1752063734 ENCODE Processing Pipeline 47d4488ae99766cdac44f778a12ea838 https://www.encodeproject.org/files/ENCFF692GBR/@@download/ENCFF692GBR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF782NFC bigWig fold change over control ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF186YOG, ENCFF191XYH, ENCFF746SKT 1654309622 ENCODE Processing Pipeline 0e489509eecf9a31fef3123cf5e11756 https://www.encodeproject.org/files/ENCFF782NFC/@@download/ENCFF782NFC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF332UTU bigWig signal p-value ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF186YOG, ENCFF191XYH, ENCFF321NUU, ENCFF746SKT 1764242892 ENCODE Processing Pipeline 52b8b883b147109d71b2b4b173c9d64f https://www.encodeproject.org/files/ENCFF332UTU/@@download/ENCFF332UTU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF990AOY bigWig signal p-value ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF321NUU, ENCFF746SKT 1534639251 ENCODE Processing Pipeline ef0d8288ae94818c1a05ff475f28ed7b https://www.encodeproject.org/files/ENCFF990AOY/@@download/ENCFF990AOY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF647RPA bigBed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF869FNE 11160708 ENCODE Processing Pipeline a960de251a4e8c800464f2e15043941a https://www.encodeproject.org/files/ENCFF647RPA/@@download/ENCFF647RPA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF911UHL bigBed narrowPeak conservative idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF660IMA 114295 ENCODE Processing Pipeline 1f610af933dbd6136285665846146b2a https://www.encodeproject.org/files/ENCFF911UHL/@@download/ENCFF911UHL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF927DIO bed narrowPeak optimal idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF174JIA, ENCFF419RSJ, ENCFF612SEP, ENCFF869FNE 41807 ENCODE Processing Pipeline ab24769056f38a0ca08a5145e37629ce https://www.encodeproject.org/files/ENCFF927DIO/@@download/ENCFF927DIO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF998FJL bigBed narrowPeak optimal idr thresholded peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF927DIO 153082 ENCODE Processing Pipeline 402380f758163b6b9494a8172673a242 https://www.encodeproject.org/files/ENCFF998FJL/@@download/ENCFF998FJL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF680UDO bam unfiltered alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF807MUK, ENCFF965IPJ, ENCFF967WPN 5522084928 ENCODE Processing Pipeline 9a8ec69bfee0f9e7c5be3f52db4ea3f2 https://www.encodeproject.org/files/ENCFF680UDO/@@download/ENCFF680UDO.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF658YKY bam unfiltered alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF380XLB, ENCFF611GML, ENCFF807MUK 5324607857 ENCODE Processing Pipeline e33805adea349c41805f636a2bc4c26d https://www.encodeproject.org/files/ENCFF658YKY/@@download/ENCFF658YKY.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF380XLB fastq reads ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF611GML 2484139690 Michael Snyder, Stanford fd25c0c34f08c1e2ddf6781ccca22cb7 https://www.encodeproject.org/files/ENCFF380XLB/@@download/ENCFF380XLB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF611GML fastq reads ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF380XLB 2358016055 Michael Snyder, Stanford 3fc2cbf911eb36131c7bc91dded3db53 https://www.encodeproject.org/files/ENCFF611GML/@@download/ENCFF611GML.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF965IPJ fastq reads ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF967WPN 2450542646 Michael Snyder, Stanford bee00aa852069f2de485712a3b17d589 https://www.encodeproject.org/files/ENCFF965IPJ/@@download/ENCFF965IPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF967WPN fastq reads ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF965IPJ 2565477163 Michael Snyder, Stanford bf35bfdb71662c21f36b9b7671b4b8da https://www.encodeproject.org/files/ENCFF967WPN/@@download/ENCFF967WPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF183PSA bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF380XLB, ENCFF611GML, ENCFF807MUK 4155775253 ENCODE Processing Pipeline 3d0b5098dd2c38e0622185a9ea36e0cb https://www.encodeproject.org/files/ENCFF183PSA/@@download/ENCFF183PSA.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF206LXZ bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF807MUK, ENCFF965IPJ, ENCFF967WPN 4451130063 ENCODE Processing Pipeline 90e491013c28d1efbec7f37b1fe82f64 https://www.encodeproject.org/files/ENCFF206LXZ/@@download/ENCFF206LXZ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF015SWZ bigWig signal p-value ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF183PSA, ENCFF581ZJL 945109356 ENCODE Processing Pipeline 6c42969eb0bc98a3f31d3acc305b1c50 https://www.encodeproject.org/files/ENCFF015SWZ/@@download/ENCFF015SWZ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF075AUM bigWig signal p-value ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF206LXZ 1004470609 ENCODE Processing Pipeline 3edd1560516483f355faf3f52ebffff6 https://www.encodeproject.org/files/ENCFF075AUM/@@download/ENCFF075AUM.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF524OUT bigWig signal p-value ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF183PSA, ENCFF206LXZ, ENCFF581ZJL 1621573991 ENCODE Processing Pipeline 7917bf785dad75c6251401f83ca4ea78 https://www.encodeproject.org/files/ENCFF524OUT/@@download/ENCFF524OUT.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF536LFC bigWig fold change over control ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF183PSA, ENCFF581ZJL 1112737080 ENCODE Processing Pipeline 5412525e02dca6039c4b16cc73034604 https://www.encodeproject.org/files/ENCFF536LFC/@@download/ENCFF536LFC.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF946NSC bigWig fold change over control ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF206LXZ 1107854091 ENCODE Processing Pipeline 93a75f98c4187db52b6c03d563db0cbf https://www.encodeproject.org/files/ENCFF946NSC/@@download/ENCFF946NSC.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF325IJT bigWig fold change over control ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF183PSA, ENCFF206LXZ, ENCFF581ZJL 2077144716 ENCODE Processing Pipeline 94cb0a39ca0fb2be8625758b861696c2 https://www.encodeproject.org/files/ENCFF325IJT/@@download/ENCFF325IJT.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF984IHA bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF206LXZ 6308318 ENCODE Processing Pipeline f4a16dafb784377abd1f6d7f181b7dd3 https://www.encodeproject.org/files/ENCFF984IHA/@@download/ENCFF984IHA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF875LKY bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF183PSA, ENCFF581ZJL 6223542 ENCODE Processing Pipeline 9c4fad93bb6a7dabb0c176f1437295d4 https://www.encodeproject.org/files/ENCFF875LKY/@@download/ENCFF875LKY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF501SOY bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF183PSA, ENCFF206LXZ, ENCFF581ZJL 7141762 ENCODE Processing Pipeline ded77277a635e3730e5e1b4d8866d52f https://www.encodeproject.org/files/ENCFF501SOY/@@download/ENCFF501SOY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF563EXY bigBed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF875LKY 11076574 ENCODE Processing Pipeline 5caf9b094e2d5838f57e7144ffcc62be https://www.encodeproject.org/files/ENCFF563EXY/@@download/ENCFF563EXY.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF367TQT bigBed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF984IHA 11005864 ENCODE Processing Pipeline e3ac1e371b52ff480ceff6ba7b78b935 https://www.encodeproject.org/files/ENCFF367TQT/@@download/ENCFF367TQT.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF220WXP bigBed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF501SOY 10884892 ENCODE Processing Pipeline 1da481119bc4c8db3ab2ede524965bd8 https://www.encodeproject.org/files/ENCFF220WXP/@@download/ENCFF220WXP.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF747VAX bed narrowPeak conservative idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF501SOY, ENCFF875LKY, ENCFF984IHA 15521 ENCODE Processing Pipeline 7562dce8f28e3274d2db48fe8dc82401 https://www.encodeproject.org/files/ENCFF747VAX/@@download/ENCFF747VAX.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF413XXU bigBed narrowPeak conservative idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF747VAX 95952 ENCODE Processing Pipeline 65bfc1976f0d1f62db8d7701bef15972 https://www.encodeproject.org/files/ENCFF413XXU/@@download/ENCFF413XXU.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF920RYJ bed narrowPeak optimal idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF501SOY, ENCFF875LKY, ENCFF984IHA 33676 ENCODE Processing Pipeline ef297c364374a7c5d686706dc6ed6a25 https://www.encodeproject.org/files/ENCFF920RYJ/@@download/ENCFF920RYJ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF288TSU bigBed narrowPeak optimal idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF920RYJ 119019 ENCODE Processing Pipeline bd7805d2322ca70d40dfd19c4d1b0d62 https://www.encodeproject.org/files/ENCFF288TSU/@@download/ENCFF288TSU.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF059CYA bam unfiltered alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF965IPJ, ENCFF967WPN 5528535417 ENCODE Processing Pipeline a39bf74dd9b6230fa515ce356e582a52 https://www.encodeproject.org/files/ENCFF059CYA/@@download/ENCFF059CYA.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF875FLT bam unfiltered alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF380XLB, ENCFF611GML, ENCFF643CGH 5329278296 ENCODE Processing Pipeline 7841368d7aa9bba1d1ad23ab90dec165 https://www.encodeproject.org/files/ENCFF875FLT/@@download/ENCFF875FLT.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF749XIH bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF965IPJ, ENCFF967WPN 4456139984 ENCODE Processing Pipeline e76dd878ff21c8258ecb91ef0db2e195 https://www.encodeproject.org/files/ENCFF749XIH/@@download/ENCFF749XIH.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF636FDE bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF380XLB, ENCFF611GML, ENCFF643CGH 4160620960 ENCODE Processing Pipeline 32da6209b8b050a000467441cb67fadd https://www.encodeproject.org/files/ENCFF636FDE/@@download/ENCFF636FDE.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF502KSF bigWig signal p-value ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF636FDE, ENCFF910IKB 1191971891 ENCODE Processing Pipeline d8846c8cd0eb0677dca63d1b48af1774 https://www.encodeproject.org/files/ENCFF502KSF/@@download/ENCFF502KSF.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF292YTI bigWig signal p-value ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF749XIH 927137622 ENCODE Processing Pipeline 493d2634ae5a19ca0c59cea06e1fdcc0 https://www.encodeproject.org/files/ENCFF292YTI/@@download/ENCFF292YTI.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF670LCO bigWig signal p-value ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF636FDE, ENCFF749XIH, ENCFF910IKB 1930388005 ENCODE Processing Pipeline c0349b1dbd2a260ccba52d112dcf00a4 https://www.encodeproject.org/files/ENCFF670LCO/@@download/ENCFF670LCO.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF294GTR bigWig fold change over control ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF636FDE, ENCFF910IKB 1109925339 ENCODE Processing Pipeline 7f88d25374cfe5156e70a7475c14e99c https://www.encodeproject.org/files/ENCFF294GTR/@@download/ENCFF294GTR.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF694PDR bigWig fold change over control ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF749XIH 1108893960 ENCODE Processing Pipeline 0099790835441bd2c19344cb98712ebb https://www.encodeproject.org/files/ENCFF694PDR/@@download/ENCFF694PDR.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF288GPT bigWig fold change over control ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF636FDE, ENCFF749XIH, ENCFF910IKB 2045330021 ENCODE Processing Pipeline 0d143deabd86f613952846228f672298 https://www.encodeproject.org/files/ENCFF288GPT/@@download/ENCFF288GPT.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF866NZC bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF636FDE, ENCFF910IKB 6067344 ENCODE Processing Pipeline 407b621c93f2f7d04a80a5cd109f171b https://www.encodeproject.org/files/ENCFF866NZC/@@download/ENCFF866NZC.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF668FWN bigBed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF866NZC 11085333 ENCODE Processing Pipeline fafc9a8362fbf82901516b88c480aefa https://www.encodeproject.org/files/ENCFF668FWN/@@download/ENCFF668FWN.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF557HFB bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF749XIH 6103458 ENCODE Processing Pipeline be158fb67091bd48cd434761f527436f https://www.encodeproject.org/files/ENCFF557HFB/@@download/ENCFF557HFB.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF210JZF bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF636FDE, ENCFF749XIH, ENCFF910IKB 7092627 ENCODE Processing Pipeline 9687f3c3617e08efb4592759896e4b4c https://www.encodeproject.org/files/ENCFF210JZF/@@download/ENCFF210JZF.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF553ZWI bigBed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF210JZF 10911695 ENCODE Processing Pipeline eef7b32e2185a01a6eaa7e075ea34a5b https://www.encodeproject.org/files/ENCFF553ZWI/@@download/ENCFF553ZWI.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF711BOH bigBed narrowPeak conservative idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF546QRV 97219 ENCODE Processing Pipeline 9cf58301d42d70131853671e3db9a9de https://www.encodeproject.org/files/ENCFF711BOH/@@download/ENCFF711BOH.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF208FUM bigBed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF557HFB 11019062 ENCODE Processing Pipeline e3dc4cf1640c740d1dad60fb9368da9c https://www.encodeproject.org/files/ENCFF208FUM/@@download/ENCFF208FUM.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF658SJY bed narrowPeak optimal idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF210JZF, ENCFF419RSJ, ENCFF557HFB, ENCFF866NZC 30017 ENCODE Processing Pipeline 2ff700b71f660671593ac41b1f9837f9 https://www.encodeproject.org/files/ENCFF658SJY/@@download/ENCFF658SJY.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF546QRV bed narrowPeak conservative idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF210JZF, ENCFF419RSJ, ENCFF557HFB, ENCFF866NZC 14281 ENCODE Processing Pipeline 4bb633257b06e699b3919da1ecc1377f https://www.encodeproject.org/files/ENCFF546QRV/@@download/ENCFF546QRV.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF362JZL bigBed narrowPeak optimal idr thresholded peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF658SJY 116225 ENCODE Processing Pipeline 433496cf90492e3273421e63b7377b08 https://www.encodeproject.org/files/ENCFF362JZL/@@download/ENCFF362JZL.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF458DTN bam unfiltered alignments ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF024GRH, ENCFF542ZSP, ENCFF807MUK 4548785954 ENCODE Processing Pipeline 8b860a56a305a751558065e213933ae0 https://www.encodeproject.org/files/ENCFF458DTN/@@download/ENCFF458DTN.bam hg19 released antibody characterized with exemption ENCFF024GRH fastq reads ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF542ZSP 2053563954 Michael Snyder, Stanford 07f585529c3d54df706a1219a03aecfe SRA:SRR6213708 https://www.encodeproject.org/files/ENCFF024GRH/@@download/ENCFF024GRH.fastq.gz Illumina HiSeq 2000 /files/ENCFF347NDJ/ released antibody characterized with exemption ENCFF542ZSP fastq reads ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF024GRH 2099354083 Michael Snyder, Stanford 4a48c7bb9e450d2e50fd09c720bb22b3 SRA:SRR6213708 https://www.encodeproject.org/files/ENCFF542ZSP/@@download/ENCFF542ZSP.fastq.gz Illumina HiSeq 2000 /files/ENCFF360CGI/ released antibody characterized with exemption ENCFF577BMV bam alignments ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF024GRH, ENCFF542ZSP, ENCFF807MUK 3840490434 ENCODE Processing Pipeline 4d50898f31b7e001508623fde78b482d https://www.encodeproject.org/files/ENCFF577BMV/@@download/ENCFF577BMV.bam hg19 released antibody characterized with exemption ENCFF856JOP bam unfiltered alignments ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF024GRH, ENCFF542ZSP, ENCFF643CGH 4553795799 ENCODE Processing Pipeline e76678d6f97d7ef7d7c5eefe2d7c6df5 https://www.encodeproject.org/files/ENCFF856JOP/@@download/ENCFF856JOP.bam GRCh38 released antibody characterized with exemption ENCFF015XKO bam alignments ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF024GRH, ENCFF542ZSP, ENCFF643CGH 3844842998 ENCODE Processing Pipeline 3d913b4e828b16ab2c0f0ba036478664 https://www.encodeproject.org/files/ENCFF015XKO/@@download/ENCFF015XKO.bam GRCh38 released antibody characterized with exemption ENCFF396TUD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF518NZX 581382 ENCODE Processing Pipeline f10945ebcc44d3cad7317e7004c0616e https://www.encodeproject.org/files/ENCFF396TUD/@@download/ENCFF396TUD.bed.gz hg19 released antibody characterized with exemption ENCFF655NZF bigWig signal p-value ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF577BMV, ENCFF634EFZ 864209467 ENCODE Processing Pipeline 516e2b94403d7b5e8b4879faebec9662 https://www.encodeproject.org/files/ENCFF655NZF/@@download/ENCFF655NZF.bigWig hg19 released antibody characterized with exemption ENCFF041QTD bigWig fold change over control ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF577BMV, ENCFF634EFZ 918450756 ENCODE Processing Pipeline f0f88c011e14165d155afd06840f0682 https://www.encodeproject.org/files/ENCFF041QTD/@@download/ENCFF041QTD.bigWig hg19 released antibody characterized with exemption ENCFF106YQM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF396TUD 1041937 ENCODE Processing Pipeline 8c18f15296772ebca674b38c15975d2a https://www.encodeproject.org/files/ENCFF106YQM/@@download/ENCFF106YQM.bigBed hg19 released antibody characterized with exemption ENCFF518NZX bed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF577BMV, ENCFF634EFZ 6113160 ENCODE Processing Pipeline e92d03e16994aeef7e8dc54222eedb18 https://www.encodeproject.org/files/ENCFF518NZX/@@download/ENCFF518NZX.bed.gz hg19 released antibody characterized with exemption ENCFF183ZPD bigBed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF518NZX 13898597 ENCODE Processing Pipeline deb5e6f66357b3c9b42b3b5d9814974a https://www.encodeproject.org/files/ENCFF183ZPD/@@download/ENCFF183ZPD.bigBed hg19 released antibody characterized with exemption ENCFF093KIY bigWig signal p-value ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF015XKO, ENCFF702GSO 895252451 ENCODE Processing Pipeline 02b04cc8b9fc6b546d595963e905daac https://www.encodeproject.org/files/ENCFF093KIY/@@download/ENCFF093KIY.bigWig GRCh38 released antibody characterized with exemption ENCFF380QFL bigBed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF250RMB 13886454 ENCODE Processing Pipeline 64dd424ef7bcf6dca8fa89d997a7948c https://www.encodeproject.org/files/ENCFF380QFL/@@download/ENCFF380QFL.bigBed GRCh38 released antibody characterized with exemption ENCFF887GWM bigWig fold change over control ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF015XKO, ENCFF702GSO 913065517 ENCODE Processing Pipeline a52fe429b1bc0f6e62b3dc3f1e462ed1 https://www.encodeproject.org/files/ENCFF887GWM/@@download/ENCFF887GWM.bigWig GRCh38 released antibody characterized with exemption ENCFF540DVR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF250RMB, ENCFF419RSJ 580377 ENCODE Processing Pipeline 4f4b2fd5309439f66a3ea30cd6d695c2 https://www.encodeproject.org/files/ENCFF540DVR/@@download/ENCFF540DVR.bed.gz GRCh38 released antibody characterized with exemption ENCFF250RMB bed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF015XKO, ENCFF702GSO 6092883 ENCODE Processing Pipeline c25c27b9f606183aef885867265f6846 https://www.encodeproject.org/files/ENCFF250RMB/@@download/ENCFF250RMB.bed.gz GRCh38 released antibody characterized with exemption ENCFF756YET bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF540DVR 1040605 ENCODE Processing Pipeline fb447ffc14a0aa131d938ab5b27d6dde https://www.encodeproject.org/files/ENCFF756YET/@@download/ENCFF756YET.bigBed GRCh38 released antibody characterized with exemption ENCFF769AJC fastq reads ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 986849985 Richard Myers, HAIB 21781ceb8bcee4fb0e7da2e8c16298ba SRA:SRR5339582 https://www.encodeproject.org/files/ENCFF769AJC/@@download/ENCFF769AJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF484RXR/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF566LFO fastq reads ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 968347710 Richard Myers, HAIB 8c337182a851fbc8e96263e91da3132f SRA:SRR5339581 https://www.encodeproject.org/files/ENCFF566LFO/@@download/ENCFF566LFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF252PYF/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF351EWE bigWig fold change over control ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF380SLU 345220116 ENCODE Processing Pipeline 32df3026f02d96a482399fbcf9b363fc https://www.encodeproject.org/files/ENCFF351EWE/@@download/ENCFF351EWE.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF921LBH bigWig signal p-value ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF242CDB, ENCFF956QBZ 439839482 ENCODE Processing Pipeline 43a554edc0d4831f5a0d2964890dace2 https://www.encodeproject.org/files/ENCFF921LBH/@@download/ENCFF921LBH.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF809VXE bigWig signal p-value ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF380SLU 592576111 ENCODE Processing Pipeline c9ec6cbe4ee814de844e47e83f297575 https://www.encodeproject.org/files/ENCFF809VXE/@@download/ENCFF809VXE.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF832IJN bigWig signal p-value ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF242CDB, ENCFF380SLU, ENCFF956QBZ 849950265 ENCODE Processing Pipeline e581a07fe4065ffd98bb24b73cf5fc61 https://www.encodeproject.org/files/ENCFF832IJN/@@download/ENCFF832IJN.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF596MAH bigWig fold change over control ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF242CDB, ENCFF956QBZ 288373589 ENCODE Processing Pipeline a1e4969316ad48b29f1e3134ac5ac643 https://www.encodeproject.org/files/ENCFF596MAH/@@download/ENCFF596MAH.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF786KBL bigWig fold change over control ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF242CDB, ENCFF380SLU, ENCFF956QBZ 676912925 ENCODE Processing Pipeline 7a865181aaf1c59ae7afb837ac5561b3 https://www.encodeproject.org/files/ENCFF786KBL/@@download/ENCFF786KBL.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF028LSE bam unfiltered alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 50 ENCFF566LFO, ENCFF643CGH 955758430 ENCODE Processing Pipeline 8c6689ea9bcff4da2199dfe54bf26812 https://www.encodeproject.org/files/ENCFF028LSE/@@download/ENCFF028LSE.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF244ZCX bam unfiltered alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF769AJC 1009864057 ENCODE Processing Pipeline 83aa4b482a2af7549f25a9ea16219e7b https://www.encodeproject.org/files/ENCFF244ZCX/@@download/ENCFF244ZCX.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF102OPY bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 50 ENCFF566LFO, ENCFF643CGH 667499788 ENCODE Processing Pipeline cedff6080f7eb97a6a72bd9543d2afbf https://www.encodeproject.org/files/ENCFF102OPY/@@download/ENCFF102OPY.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF703HZB bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF769AJC 756416501 ENCODE Processing Pipeline 2d8d31894d362f4818c361670936d89a https://www.encodeproject.org/files/ENCFF703HZB/@@download/ENCFF703HZB.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF391AZY bigWig fold change over control ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF102OPY, ENCFF341IVK, ENCFF703HZB, ENCFF982GQU 681818883 ENCODE Processing Pipeline 2b71ea6c37c9dad48edc0003448b36ce https://www.encodeproject.org/files/ENCFF391AZY/@@download/ENCFF391AZY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF817EYT bigWig fold change over control ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF703HZB, ENCFF982GQU 345787847 ENCODE Processing Pipeline 1b5d4cd709143a3fbb7f53cc80fbd245 https://www.encodeproject.org/files/ENCFF817EYT/@@download/ENCFF817EYT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF196KFJ bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF703HZB, ENCFF982GQU 4603363 ENCODE Processing Pipeline 9fc653908a3341d9a408e8124be15f67 https://www.encodeproject.org/files/ENCFF196KFJ/@@download/ENCFF196KFJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF998VXJ bigWig signal p-value ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF703HZB, ENCFF982GQU 484015936 ENCODE Processing Pipeline 40e93c86f9cb3a2041e7331ad0e4eba6 https://www.encodeproject.org/files/ENCFF998VXJ/@@download/ENCFF998VXJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF910RRX bigWig fold change over control ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF102OPY, ENCFF341IVK 287769682 ENCODE Processing Pipeline 7cebf6b5126d6ea688a67097e36fdda3 https://www.encodeproject.org/files/ENCFF910RRX/@@download/ENCFF910RRX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF786AIF bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF102OPY, ENCFF341IVK, ENCFF703HZB, ENCFF982GQU 5903062 ENCODE Processing Pipeline cbbe204694b207f0d3e3ff1b52111d8d https://www.encodeproject.org/files/ENCFF786AIF/@@download/ENCFF786AIF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF679QDJ bigWig signal p-value ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF102OPY, ENCFF341IVK 522645556 ENCODE Processing Pipeline 232391d56032ebf7dd39647d52ef2891 https://www.encodeproject.org/files/ENCFF679QDJ/@@download/ENCFF679QDJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF749VGL bigBed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF196KFJ 11117256 ENCODE Processing Pipeline 3c16b77c48346c1acb307fc903b09671 https://www.encodeproject.org/files/ENCFF749VGL/@@download/ENCFF749VGL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF322WKG bed narrowPeak optimal idr thresholded peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF005HJQ, ENCFF196KFJ, ENCFF419RSJ, ENCFF786AIF 1430302 ENCODE Processing Pipeline cfb4793b08a86db7181ca5d70b260615 https://www.encodeproject.org/files/ENCFF322WKG/@@download/ENCFF322WKG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF831DQC bigWig signal p-value ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF102OPY, ENCFF341IVK, ENCFF703HZB, ENCFF982GQU 785281403 ENCODE Processing Pipeline 1b3199f44b31b5fe247f2f1b71dc08f6 https://www.encodeproject.org/files/ENCFF831DQC/@@download/ENCFF831DQC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF561KAW bigBed narrowPeak optimal idr thresholded peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF322WKG 2389904 ENCODE Processing Pipeline fafb9420e05cd15f557d83cf4b8bace7 https://www.encodeproject.org/files/ENCFF561KAW/@@download/ENCFF561KAW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF005HJQ bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF102OPY, ENCFF341IVK 4983249 ENCODE Processing Pipeline 22395be03008a7a2a686724b5691b2c2 https://www.encodeproject.org/files/ENCFF005HJQ/@@download/ENCFF005HJQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF692ATV bigBed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF005HJQ 11506890 ENCODE Processing Pipeline ede2d664057df20d2efddbd40b7d4fe4 https://www.encodeproject.org/files/ENCFF692ATV/@@download/ENCFF692ATV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF209PMT bigBed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF786AIF 12354710 ENCODE Processing Pipeline 8912ecac76e4962181d24377e999af55 https://www.encodeproject.org/files/ENCFF209PMT/@@download/ENCFF209PMT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF050ATK bam unfiltered alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 50 ENCFF566LFO, ENCFF807MUK 954570976 ENCODE Processing Pipeline 3c7802a4ad6ef8c88d154b6dc388fc3f https://www.encodeproject.org/files/ENCFF050ATK/@@download/ENCFF050ATK.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF033NJM bam unfiltered alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 50 ENCFF769AJC, ENCFF807MUK 1008569114 ENCODE Processing Pipeline 404d5ad37dff2d482a71b06464f76fb7 https://www.encodeproject.org/files/ENCFF033NJM/@@download/ENCFF033NJM.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF242CDB bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 50 ENCFF566LFO, ENCFF807MUK 667611071 ENCODE Processing Pipeline e150a9948ff9b653a31d14031c098d3b https://www.encodeproject.org/files/ENCFF242CDB/@@download/ENCFF242CDB.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF380SLU bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 50 ENCFF769AJC, ENCFF807MUK 756470225 ENCODE Processing Pipeline 4d5c6d56c6004849c5f5a75efc02fe86 https://www.encodeproject.org/files/ENCFF380SLU/@@download/ENCFF380SLU.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF346PQE bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF380SLU 4618205 ENCODE Processing Pipeline ad133f9bd7f1ba8b63b9aff213a67e14 https://www.encodeproject.org/files/ENCFF346PQE/@@download/ENCFF346PQE.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF414BJO bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF242CDB, ENCFF956QBZ 4977831 ENCODE Processing Pipeline 7c7077dee92bb8fba520d21de724eb86 https://www.encodeproject.org/files/ENCFF414BJO/@@download/ENCFF414BJO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF661MCK bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF242CDB, ENCFF380SLU, ENCFF956QBZ 5902870 ENCODE Processing Pipeline ba3c6f9b7274c15aeacb943cc08e1433 https://www.encodeproject.org/files/ENCFF661MCK/@@download/ENCFF661MCK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF644MKJ bigBed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF346PQE 11139110 ENCODE Processing Pipeline d800d15a2209d7e0e17123bcd82866df https://www.encodeproject.org/files/ENCFF644MKJ/@@download/ENCFF644MKJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF153YZR bigBed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF414BJO 11499443 ENCODE Processing Pipeline 58b0aeee97cec4e87caa20cd4b99d447 https://www.encodeproject.org/files/ENCFF153YZR/@@download/ENCFF153YZR.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF936KAM bigBed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF661MCK 12347214 ENCODE Processing Pipeline b51e80083ff5f04f3853cc78fa19f2f0 https://www.encodeproject.org/files/ENCFF936KAM/@@download/ENCFF936KAM.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF760HUV bed narrowPeak optimal idr thresholded peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF346PQE, ENCFF414BJO, ENCFF661MCK 1427699 ENCODE Processing Pipeline 4afa784408ac7c6d1be29f75f613ebeb https://www.encodeproject.org/files/ENCFF760HUV/@@download/ENCFF760HUV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF109FNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF760HUV 2385055 ENCODE Processing Pipeline 07ce9fb9d790cf13132524c0240e77d6 https://www.encodeproject.org/files/ENCFF109FNZ/@@download/ENCFF109FNZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF497NCC fastq reads ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF538ODU 3794863837 Richard Myers, HAIB 34635a5d18d5026506c33b6fa43b74d0 https://www.encodeproject.org/files/ENCFF497NCC/@@download/ENCFF497NCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF849CDI/ released antibody characterized with exemption experiment not submitted to GEO ENCFF538ODU fastq reads ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF497NCC 3866057556 Richard Myers, HAIB b9b581df0ce2b7b739c48a3a5946a65a https://www.encodeproject.org/files/ENCFF538ODU/@@download/ENCFF538ODU.fastq.gz Illumina HiSeq 2000 /files/ENCFF842SLH/ released antibody characterized with exemption experiment not submitted to GEO ENCFF713HHQ bam alignments ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF497NCC, ENCFF538ODU, ENCFF807MUK 5709270094 ENCODE Processing Pipeline df467380409f313b02b69f865140829f https://www.encodeproject.org/files/ENCFF713HHQ/@@download/ENCFF713HHQ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF090HDU bam unfiltered alignments ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF497NCC, ENCFF538ODU, ENCFF643CGH 8322301461 ENCODE Processing Pipeline 91799e095000b586b0196e81d1da77ed https://www.encodeproject.org/files/ENCFF090HDU/@@download/ENCFF090HDU.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF827UYJ bam unfiltered alignments ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF497NCC, ENCFF538ODU, ENCFF807MUK 8307359133 ENCODE Processing Pipeline 796ec26a1f0f73e8ee30272cba4371dc https://www.encodeproject.org/files/ENCFF827UYJ/@@download/ENCFF827UYJ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF939PEG bam alignments ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF497NCC, ENCFF538ODU, ENCFF643CGH 5710536153 ENCODE Processing Pipeline 13a83af065c95ae1c2625410b22fb71f https://www.encodeproject.org/files/ENCFF939PEG/@@download/ENCFF939PEG.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF194WKG bigWig fold change over control ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF661OHD, ENCFF713HHQ 1269632433 ENCODE Processing Pipeline 90d67ba4cf7618cf415ad3a670039b59 https://www.encodeproject.org/files/ENCFF194WKG/@@download/ENCFF194WKG.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF837AYJ bigBed narrowPeak peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF794MZC 12997239 ENCODE Processing Pipeline 97e81c85c0908e649360c1522a36e4e5 https://www.encodeproject.org/files/ENCFF837AYJ/@@download/ENCFF837AYJ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF122UUO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF794MZC 1111147 ENCODE Processing Pipeline 342ed7cbced7269395c0820c712280b8 https://www.encodeproject.org/files/ENCFF122UUO/@@download/ENCFF122UUO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF183UDF bigWig signal p-value ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF736RDZ, ENCFF939PEG 840922482 ENCODE Processing Pipeline c44da31483c493ba693c6256636b33b6 https://www.encodeproject.org/files/ENCFF183UDF/@@download/ENCFF183UDF.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF073AVA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF912ZJS 1092085 ENCODE Processing Pipeline 581a1fff6f2f73bfc3017c39ee555a41 https://www.encodeproject.org/files/ENCFF073AVA/@@download/ENCFF073AVA.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF261IYM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF073AVA 2414169 ENCODE Processing Pipeline 5bbafc5612764186b0a623fd56b1910a https://www.encodeproject.org/files/ENCFF261IYM/@@download/ENCFF261IYM.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF794MZC bed narrowPeak peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF661OHD, ENCFF713HHQ 7187896 ENCODE Processing Pipeline 7a355c3791a54b312d9f5f85a4f123ee https://www.encodeproject.org/files/ENCFF794MZC/@@download/ENCFF794MZC.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF078WQQ bigWig fold change over control ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF736RDZ, ENCFF939PEG 1268046308 ENCODE Processing Pipeline d92e246f335529b0d95782cd5a4489fb https://www.encodeproject.org/files/ENCFF078WQQ/@@download/ENCFF078WQQ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF912ZJS bed narrowPeak peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF736RDZ, ENCFF939PEG 7124863 ENCODE Processing Pipeline 00d1a82e45c50481408b882ac22d4813 https://www.encodeproject.org/files/ENCFF912ZJS/@@download/ENCFF912ZJS.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF795RWR bigBed narrowPeak peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF912ZJS 12926647 ENCODE Processing Pipeline 1274c43c4a9d405a8e3f6033a21cf3fa https://www.encodeproject.org/files/ENCFF795RWR/@@download/ENCFF795RWR.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF107ZYA bigWig signal p-value ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF661OHD, ENCFF713HHQ 839878020 ENCODE Processing Pipeline 8fe3eab1e48513359662a87ab8e7db1d https://www.encodeproject.org/files/ENCFF107ZYA/@@download/ENCFF107ZYA.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF136ZFZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF122UUO 2443414 ENCODE Processing Pipeline 96b3d417833cfc0576db8e9162a5850f https://www.encodeproject.org/files/ENCFF136ZFZ/@@download/ENCFF136ZFZ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF645FSY fastq reads ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF278JAX 1522691596 Michael Snyder, Stanford 2651a90d301e02536e15201090d32cf6 SRA:SRR6213073 https://www.encodeproject.org/files/ENCFF645FSY/@@download/ENCFF645FSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF426HWD/ released mild to moderate bottlenecking, low read depth ENCFF278JAX fastq reads ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF645FSY 1549676447 Michael Snyder, Stanford 0c5cad0c75ceb38ae7ba71292abed456 SRA:SRR6213073 https://www.encodeproject.org/files/ENCFF278JAX/@@download/ENCFF278JAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF617WTK/ released mild to moderate bottlenecking, low read depth ENCFF291IKU fastq reads ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF059MRY 1916920706 Michael Snyder, Stanford 90be94719bd7119e6301005395607deb SRA:SRR6213072 https://www.encodeproject.org/files/ENCFF291IKU/@@download/ENCFF291IKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF118YOS/ released mild to moderate bottlenecking, low read depth ENCFF059MRY fastq reads ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF291IKU 1942495687 Michael Snyder, Stanford ae607c23948bbb191e613f747040b352 SRA:SRR6213072 https://www.encodeproject.org/files/ENCFF059MRY/@@download/ENCFF059MRY.fastq.gz Illumina HiSeq 2000 /files/ENCFF257ZET/ released mild to moderate bottlenecking, low read depth ENCFF689UPK bam unfiltered alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF059MRY, ENCFF291IKU, ENCFF807MUK 3887166811 ENCODE Processing Pipeline 0bca95ac5ed52fcae05a791020c5c489 https://www.encodeproject.org/files/ENCFF689UPK/@@download/ENCFF689UPK.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF591NDC bam unfiltered alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF059MRY, ENCFF291IKU, ENCFF643CGH 3894554632 ENCODE Processing Pipeline c3c4f82486b61e349364fd523d7a4ca9 https://www.encodeproject.org/files/ENCFF591NDC/@@download/ENCFF591NDC.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF204KRO bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF059MRY, ENCFF291IKU, ENCFF643CGH 3324177848 ENCODE Processing Pipeline 495c4c9a98177076a09ba800238d7906 https://www.encodeproject.org/files/ENCFF204KRO/@@download/ENCFF204KRO.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF536FQU bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF059MRY, ENCFF291IKU, ENCFF807MUK 3318296716 ENCODE Processing Pipeline 5f8bfd59a2010a37b5f06e7f3e1c2e1e https://www.encodeproject.org/files/ENCFF536FQU/@@download/ENCFF536FQU.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF281EIU bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 6800168 ENCODE Processing Pipeline 0fa72eaca56d79631ec62e41fa22699f https://www.encodeproject.org/files/ENCFF281EIU/@@download/ENCFF281EIU.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF729SUL bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF007DGT, ENCFF204KRO, ENCFF290UZX 6771329 ENCODE Processing Pipeline 192d5e5934f5bcbc1c741ab71dea9942 https://www.encodeproject.org/files/ENCFF729SUL/@@download/ENCFF729SUL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF047YUA fastq reads ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF335VLV 3950713776 Michael Snyder, Stanford 9a7aa16cb54ef9a01c3c43f714c992fa SRA:SRR6213074 https://www.encodeproject.org/files/ENCFF047YUA/@@download/ENCFF047YUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF426HWD/ released mild to moderate bottlenecking, low read depth ENCFF335VLV fastq reads ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF047YUA 3984986708 Michael Snyder, Stanford a23d10335c0c1265d9d288be238b86cf SRA:SRR6213074 https://www.encodeproject.org/files/ENCFF335VLV/@@download/ENCFF335VLV.fastq.gz Illumina HiSeq 2000 /files/ENCFF617WTK/ released mild to moderate bottlenecking, low read depth ENCFF523QCI bam unfiltered alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF047YUA, ENCFF278JAX, ENCFF335VLV, ENCFF643CGH, ENCFF645FSY 10531434166 ENCODE Processing Pipeline ddd7d45899b47d5519eaf2602e6790a1 https://www.encodeproject.org/files/ENCFF523QCI/@@download/ENCFF523QCI.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF659SVU bam unfiltered alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF047YUA, ENCFF278JAX, ENCFF335VLV, ENCFF645FSY, ENCFF807MUK 10511764412 ENCODE Processing Pipeline e139d977844c475b567426560a98294e https://www.encodeproject.org/files/ENCFF659SVU/@@download/ENCFF659SVU.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF514ADB bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF047YUA, ENCFF278JAX, ENCFF335VLV, ENCFF645FSY, ENCFF807MUK 8429669804 ENCODE Processing Pipeline 10433cf71ae14d312a8c393d02f4e85d https://www.encodeproject.org/files/ENCFF514ADB/@@download/ENCFF514ADB.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF658FRS bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF047YUA, ENCFF278JAX, ENCFF335VLV, ENCFF643CGH, ENCFF645FSY 8445119871 ENCODE Processing Pipeline dc4e9f8e8b6cee9fc3fb55573619f252 https://www.encodeproject.org/files/ENCFF658FRS/@@download/ENCFF658FRS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF530EGE bigWig fold change over control ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF514ADB, ENCFF731XOB, ENCFF834FWS 1994130634 ENCODE Processing Pipeline dd5e1059b08cb05ec0f5792e4932fda6 https://www.encodeproject.org/files/ENCFF530EGE/@@download/ENCFF530EGE.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF605AVV bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF514ADB, ENCFF731XOB, ENCFF834FWS 7152526 ENCODE Processing Pipeline c1fc0f72e5501ac7de85470d718bf3ed https://www.encodeproject.org/files/ENCFF605AVV/@@download/ENCFF605AVV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF716DHR bigBed narrowPeak optimal idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF241JKV 2029098 ENCODE Processing Pipeline 75cd9a894e8ac949d8ae29fa6ff2d3e0 https://www.encodeproject.org/files/ENCFF716DHR/@@download/ENCFF716DHR.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF962BGL bed narrowPeak conservative idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF281EIU, ENCFF605AVV, ENCFF677QYW 923831 ENCODE Processing Pipeline d9d88683b6b807139f6b5a9ae9c84688 https://www.encodeproject.org/files/ENCFF962BGL/@@download/ENCFF962BGL.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF339VUG bigBed narrowPeak conservative idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF962BGL 1996702 ENCODE Processing Pipeline 465c85bd980929c5159eadbba8d02655 https://www.encodeproject.org/files/ENCFF339VUG/@@download/ENCFF339VUG.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF391XEK bigWig signal p-value ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF514ADB, ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 1983371677 ENCODE Processing Pipeline 357c4d55f5e2ed14f3655a371e80b46f https://www.encodeproject.org/files/ENCFF391XEK/@@download/ENCFF391XEK.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF745LSK bigBed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF605AVV 13093641 ENCODE Processing Pipeline 3478f3555238e778e77d0b67b4f9df76 https://www.encodeproject.org/files/ENCFF745LSK/@@download/ENCFF745LSK.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF112CJL bigWig signal p-value ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF514ADB, ENCFF731XOB, ENCFF834FWS 1776455482 ENCODE Processing Pipeline 1864a77f37eb6647eeb01b6134ffda31 https://www.encodeproject.org/files/ENCFF112CJL/@@download/ENCFF112CJL.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF826JAZ bigWig fold change over control ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF514ADB, ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 2304153813 ENCODE Processing Pipeline 43182dfbc06dea8b4ed1a176dedaa3e8 https://www.encodeproject.org/files/ENCFF826JAZ/@@download/ENCFF826JAZ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF677QYW bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF514ADB, ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 7158079 ENCODE Processing Pipeline 06154384a321cd6f96481e60d2ed0023 https://www.encodeproject.org/files/ENCFF677QYW/@@download/ENCFF677QYW.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF729BLX bigBed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF677QYW 13138284 ENCODE Processing Pipeline a3b29e35361bf8cc264f7564f37a0e6c https://www.encodeproject.org/files/ENCFF729BLX/@@download/ENCFF729BLX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF241JKV bed narrowPeak optimal idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF281EIU, ENCFF605AVV, ENCFF677QYW 930122 ENCODE Processing Pipeline 0a7755c1ba62ad85da95d6f5e7f2a2ad https://www.encodeproject.org/files/ENCFF241JKV/@@download/ENCFF241JKV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF908TVU bigWig signal p-value ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF007DGT, ENCFF290UZX, ENCFF658FRS 1693977364 ENCODE Processing Pipeline ee7ed265e5af8f1a9c10c43775cff42a https://www.encodeproject.org/files/ENCFF908TVU/@@download/ENCFF908TVU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF228BVK bigBed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF975HDI 13121879 ENCODE Processing Pipeline ded815660395b9ac6312c96f3ac398f8 https://www.encodeproject.org/files/ENCFF228BVK/@@download/ENCFF228BVK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF614JOJ bigWig fold change over control ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF007DGT, ENCFF204KRO, ENCFF290UZX, ENCFF658FRS 2311675084 ENCODE Processing Pipeline a7a25aa571986884816f18bd79852712 https://www.encodeproject.org/files/ENCFF614JOJ/@@download/ENCFF614JOJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF035BKC bigBed narrowPeak optimal idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF273HTX 2053124 ENCODE Processing Pipeline c06406e3eb61c83fc15fb01709416a72 https://www.encodeproject.org/files/ENCFF035BKC/@@download/ENCFF035BKC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF675JOR bigWig fold change over control ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF007DGT, ENCFF290UZX, ENCFF658FRS 2001537168 ENCODE Processing Pipeline a90b4f9a4b84d9525315f9ddb4623e5a https://www.encodeproject.org/files/ENCFF675JOR/@@download/ENCFF675JOR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF975HDI bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF007DGT, ENCFF290UZX, ENCFF658FRS 7168049 ENCODE Processing Pipeline 570e0d872e977044c4d8c5714ce7f2de https://www.encodeproject.org/files/ENCFF975HDI/@@download/ENCFF975HDI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF573WVE bigBed narrowPeak conservative idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF818GAP 2023350 ENCODE Processing Pipeline aab90781f89722083ada17f5a20da213 https://www.encodeproject.org/files/ENCFF573WVE/@@download/ENCFF573WVE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF842UGH bigBed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF103EVC 13200066 ENCODE Processing Pipeline a6e51b049e9836cce17cae7de636b55b https://www.encodeproject.org/files/ENCFF842UGH/@@download/ENCFF842UGH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF273HTX bed narrowPeak optimal idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF103EVC, ENCFF419RSJ, ENCFF729SUL, ENCFF975HDI 941592 ENCODE Processing Pipeline 0a0dcaa071c1e853bc19bcbc3c611f51 https://www.encodeproject.org/files/ENCFF273HTX/@@download/ENCFF273HTX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF103EVC bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF007DGT, ENCFF204KRO, ENCFF290UZX, ENCFF658FRS 7193536 ENCODE Processing Pipeline f601995fc4248842848d375ae3e1ed27 https://www.encodeproject.org/files/ENCFF103EVC/@@download/ENCFF103EVC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF818GAP bed narrowPeak conservative idr thresholded peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF103EVC, ENCFF419RSJ, ENCFF729SUL, ENCFF975HDI 936538 ENCODE Processing Pipeline 7e72b412e31d0219f5cf06f916d79e9f https://www.encodeproject.org/files/ENCFF818GAP/@@download/ENCFF818GAP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF494OPQ bigWig signal p-value ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF007DGT, ENCFF204KRO, ENCFF290UZX, ENCFF658FRS 1985803561 ENCODE Processing Pipeline 51d7e392004c9a03722d2ff8ec9c56f6 https://www.encodeproject.org/files/ENCFF494OPQ/@@download/ENCFF494OPQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF329ODS fastq reads ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 1 100 paired-ended 1 ENCFF765DMW 5876029854 Michael Snyder, Stanford 542f1851ce89d2daeb7fe59d007ebb31 SRA:SRR6212868 https://www.encodeproject.org/files/ENCFF329ODS/@@download/ENCFF329ODS.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF034VXG fastq reads ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 1 100 paired-ended 1 ENCFF602OUR 1391037917 Michael Snyder, Stanford eeec537b107fb564c4f8c77942e85937 https://www.encodeproject.org/files/ENCFF034VXG/@@download/ENCFF034VXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF765DMW fastq reads ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 1 100 paired-ended 2 ENCFF329ODS 6211598241 Michael Snyder, Stanford 2e88847e24e49a61e93ccbc84def8c25 SRA:SRR6212868 https://www.encodeproject.org/files/ENCFF765DMW/@@download/ENCFF765DMW.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF602OUR fastq reads ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 1 100 paired-ended 2 ENCFF034VXG 1452289674 Michael Snyder, Stanford 181c723888d49d1d11e61f679f493578 https://www.encodeproject.org/files/ENCFF602OUR/@@download/ENCFF602OUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF570QCN fastq reads ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 1 100 paired-ended 1 ENCFF591FAA 1670088924 Michael Snyder, Stanford 93fa012c3ebfad02e6d214efd6d81956 SRA:SRR6212867 https://www.encodeproject.org/files/ENCFF570QCN/@@download/ENCFF570QCN.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF591FAA fastq reads ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 1 100 paired-ended 2 ENCFF570QCN 1755750392 Michael Snyder, Stanford b00cbbc2641350f80d58e79f23ebf06f SRA:SRR6212867 https://www.encodeproject.org/files/ENCFF591FAA/@@download/ENCFF591FAA.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF614RJJ bam unfiltered alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 100 ENCFF570QCN, ENCFF591FAA, ENCFF643CGH 3338320690 ENCODE Processing Pipeline f36f67cfef5b96dbb893b9517857da84 https://www.encodeproject.org/files/ENCFF614RJJ/@@download/ENCFF614RJJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF591ADX bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 100 ENCFF570QCN, ENCFF591FAA, ENCFF643CGH 2200964526 ENCODE Processing Pipeline b294025b4df044322a1a4f5c7723582b https://www.encodeproject.org/files/ENCFF591ADX/@@download/ENCFF591ADX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF246FRM bam unfiltered alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 100 ENCFF329ODS, ENCFF643CGH, ENCFF765DMW 10975821658 ENCODE Processing Pipeline 68bc2e41256f6c94c9aeb2770c2549f4 https://www.encodeproject.org/files/ENCFF246FRM/@@download/ENCFF246FRM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF298ZEH bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 100 ENCFF329ODS, ENCFF643CGH, ENCFF765DMW 8472199953 ENCODE Processing Pipeline f35264dacba4002a41074efa78eae0f0 https://www.encodeproject.org/files/ENCFF298ZEH/@@download/ENCFF298ZEH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF589UVH bam unfiltered alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 100 ENCFF570QCN, ENCFF591FAA, ENCFF807MUK 3335936132 ENCODE Processing Pipeline 26996c7b7e2b801907c447feafa340db https://www.encodeproject.org/files/ENCFF589UVH/@@download/ENCFF589UVH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF700FUA bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 100 ENCFF570QCN, ENCFF591FAA, ENCFF807MUK 2199500520 ENCODE Processing Pipeline d6df4f60b00a578dc30a571490c6b9d6 https://www.encodeproject.org/files/ENCFF700FUA/@@download/ENCFF700FUA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF687RIS bam unfiltered alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 100 ENCFF329ODS, ENCFF765DMW, ENCFF807MUK 10963680166 ENCODE Processing Pipeline 47f190e2613d00b02899c798916ae50b https://www.encodeproject.org/files/ENCFF687RIS/@@download/ENCFF687RIS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF189FPT bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 100 ENCFF329ODS, ENCFF765DMW, ENCFF807MUK 8462435837 ENCODE Processing Pipeline b14302965f8865da144d3778bfcc2ece https://www.encodeproject.org/files/ENCFF189FPT/@@download/ENCFF189FPT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF846GWP bigWig signal p-value ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF298ZEH, ENCFF712WXB, ENCFF790TAN 1826936022 ENCODE Processing Pipeline 4a8eb1e8098f3d951820905776475118 https://www.encodeproject.org/files/ENCFF846GWP/@@download/ENCFF846GWP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF675WIG bigWig signal p-value ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF591ADX, ENCFF712WXB 949676206 ENCODE Processing Pipeline 5c4fba6fc91abeab1674045b1c18bf41 https://www.encodeproject.org/files/ENCFF675WIG/@@download/ENCFF675WIG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF328ERD bigWig signal p-value ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF298ZEH, ENCFF591ADX, ENCFF712WXB, ENCFF790TAN 2417691806 ENCODE Processing Pipeline 75d4414488fcb7777f6f1c989dd384e0 https://www.encodeproject.org/files/ENCFF328ERD/@@download/ENCFF328ERD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF055RAT bigWig fold change over control ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF298ZEH, ENCFF712WXB, ENCFF790TAN 2509368981 ENCODE Processing Pipeline 9329217e92605acda61dd3503c3c762d https://www.encodeproject.org/files/ENCFF055RAT/@@download/ENCFF055RAT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF406XUO bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF591ADX, ENCFF712WXB 6130759 ENCODE Processing Pipeline fa40ab8d0ef615a3f86b370d9455780b https://www.encodeproject.org/files/ENCFF406XUO/@@download/ENCFF406XUO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF037DSE bigBed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF827OZO 11067991 ENCODE Processing Pipeline 30edb8c596c04db88e81c26648407ad8 https://www.encodeproject.org/files/ENCFF037DSE/@@download/ENCFF037DSE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF148HSX bigBed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF406XUO 13363220 ENCODE Processing Pipeline efb52f6d33ce3d539527a300f916a2c8 https://www.encodeproject.org/files/ENCFF148HSX/@@download/ENCFF148HSX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF889AKD bigBed narrowPeak optimal idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF905KOD 238657 ENCODE Processing Pipeline 679d10a9c8d81622a11ce9942804c8ef https://www.encodeproject.org/files/ENCFF889AKD/@@download/ENCFF889AKD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF020PDU bigWig fold change over control ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF591ADX, ENCFF712WXB 908727141 ENCODE Processing Pipeline 2a91d0c5de104e82225791af637721b3 https://www.encodeproject.org/files/ENCFF020PDU/@@download/ENCFF020PDU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF540WYT bigBed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF434VVG 13134136 ENCODE Processing Pipeline f2845744a60ddcc5e56c03908753cf08 https://www.encodeproject.org/files/ENCFF540WYT/@@download/ENCFF540WYT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF415HOL bigWig fold change over control ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF298ZEH, ENCFF591ADX, ENCFF712WXB, ENCFF790TAN 2696733567 ENCODE Processing Pipeline 1087405c169414b90eb3db8d3eb5e1fc https://www.encodeproject.org/files/ENCFF415HOL/@@download/ENCFF415HOL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF827OZO bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF298ZEH, ENCFF712WXB, ENCFF790TAN 7244895 ENCODE Processing Pipeline 6c3bd78fdd3e0e8681d0c61c8c57d012 https://www.encodeproject.org/files/ENCFF827OZO/@@download/ENCFF827OZO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF434VVG bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF298ZEH, ENCFF591ADX, ENCFF712WXB, ENCFF790TAN 7280023 ENCODE Processing Pipeline 8afe3aec62dd66b229a91808604b4636 https://www.encodeproject.org/files/ENCFF434VVG/@@download/ENCFF434VVG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF061UNO bed narrowPeak conservative idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF406XUO, ENCFF419RSJ, ENCFF434VVG, ENCFF827OZO 66552 ENCODE Processing Pipeline a52ddf6a7aba9a94576c3118f814b856 https://www.encodeproject.org/files/ENCFF061UNO/@@download/ENCFF061UNO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF839BUQ bigBed narrowPeak conservative idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF061UNO 167325 ENCODE Processing Pipeline 055ca7d793177abdeaa75dbc5db68d67 https://www.encodeproject.org/files/ENCFF839BUQ/@@download/ENCFF839BUQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF905KOD bed narrowPeak optimal idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF406XUO, ENCFF419RSJ, ENCFF434VVG, ENCFF827OZO 89862 ENCODE Processing Pipeline 56cd919bdab94ad8d0462c3fb5db363a https://www.encodeproject.org/files/ENCFF905KOD/@@download/ENCFF905KOD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF626TXC bigWig signal p-value ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF160VXC, ENCFF189FPT, ENCFF834TUP 2168812546 ENCODE Processing Pipeline 7e60ba00cb5580186526978bf6b9eb96 https://www.encodeproject.org/files/ENCFF626TXC/@@download/ENCFF626TXC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF484VIE bigWig signal p-value ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF700FUA, ENCFF834TUP 932807292 ENCODE Processing Pipeline a8cf532afb10cabfa997006768081542 https://www.encodeproject.org/files/ENCFF484VIE/@@download/ENCFF484VIE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF459FNH bigWig signal p-value ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF160VXC, ENCFF189FPT, ENCFF700FUA, ENCFF834TUP 2431088985 ENCODE Processing Pipeline a925528650d35ed3fedf93538fbc2897 https://www.encodeproject.org/files/ENCFF459FNH/@@download/ENCFF459FNH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF177NRM bigWig fold change over control ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF160VXC, ENCFF189FPT, ENCFF834TUP 2498790079 ENCODE Processing Pipeline 0c4024ecc13123f13a7f63392b4e53b4 https://www.encodeproject.org/files/ENCFF177NRM/@@download/ENCFF177NRM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF031LSE bigWig fold change over control ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF700FUA, ENCFF834TUP 901748097 ENCODE Processing Pipeline 368a6b15119272e73aa15e3cc412225b https://www.encodeproject.org/files/ENCFF031LSE/@@download/ENCFF031LSE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF487KQK bigWig fold change over control ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF160VXC, ENCFF189FPT, ENCFF700FUA, ENCFF834TUP 2719919632 ENCODE Processing Pipeline 8f08ae97305e5f85e39c208ddd35f77d https://www.encodeproject.org/files/ENCFF487KQK/@@download/ENCFF487KQK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF486FET bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF160VXC, ENCFF189FPT, ENCFF834TUP 7239229 ENCODE Processing Pipeline ec683eed7ca6abdecb559cba9830d724 https://www.encodeproject.org/files/ENCFF486FET/@@download/ENCFF486FET.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF534CIF bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF700FUA, ENCFF834TUP 6123736 ENCODE Processing Pipeline 1912dede8fd2149f0c07623f8daa48e5 https://www.encodeproject.org/files/ENCFF534CIF/@@download/ENCFF534CIF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF677IKS bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF160VXC, ENCFF189FPT, ENCFF700FUA, ENCFF834TUP 7273760 ENCODE Processing Pipeline 156b7b7a0ae57f855b38516596524aca https://www.encodeproject.org/files/ENCFF677IKS/@@download/ENCFF677IKS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF546DAH bigBed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF486FET 11054016 ENCODE Processing Pipeline e0e5915b55800c5a08ba384eb2e71b7f https://www.encodeproject.org/files/ENCFF546DAH/@@download/ENCFF546DAH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF344NIU bigBed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF534CIF 13346093 ENCODE Processing Pipeline e5b89152c9f3fa8a331f1ef6c7bebc4a https://www.encodeproject.org/files/ENCFF344NIU/@@download/ENCFF344NIU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF312WOE bigBed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF677IKS 13129783 ENCODE Processing Pipeline 2444083a7c42b48b42ac03db34378985 https://www.encodeproject.org/files/ENCFF312WOE/@@download/ENCFF312WOE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF865IDL bed narrowPeak conservative idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF001TDO, ENCFF486FET, ENCFF534CIF, ENCFF677IKS 64906 ENCODE Processing Pipeline 84c7261dcc551ee304a34112f3f91d2e https://www.encodeproject.org/files/ENCFF865IDL/@@download/ENCFF865IDL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF633DAY bigBed narrowPeak conservative idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF865IDL 163160 ENCODE Processing Pipeline 2fe5b7b936d87d0e6d0b2bd848e8cc44 https://www.encodeproject.org/files/ENCFF633DAY/@@download/ENCFF633DAY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF877ANE bed narrowPeak optimal idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF001TDO, ENCFF486FET, ENCFF534CIF, ENCFF677IKS 87379 ENCODE Processing Pipeline 5b3373ba623689cbcabf76d230465984 https://www.encodeproject.org/files/ENCFF877ANE/@@download/ENCFF877ANE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF745ARK bigBed narrowPeak optimal idr thresholded peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1, 2 ENCFF877ANE 232193 ENCODE Processing Pipeline 56d8e3db877287d6b7781bef0a0f740b https://www.encodeproject.org/files/ENCFF745ARK/@@download/ENCFF745ARK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF885QFW bam unfiltered alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF241ADB, ENCFF417KCI, ENCFF807MUK 3835743428 ENCODE Processing Pipeline 5cf99357157df2a32c6c879b9a4f7a42 https://www.encodeproject.org/files/ENCFF885QFW/@@download/ENCFF885QFW.bam hg19 released low read depth ENCFF417KCI fastq reads ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF241ADB 1706397503 Michael Snyder, Stanford e1a36dab1b099c596c6600c93e6af910 SRA:SRR5111384 https://www.encodeproject.org/files/ENCFF417KCI/@@download/ENCFF417KCI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF241ADB fastq reads ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF417KCI 1754283124 Michael Snyder, Stanford 85a84cd607dbce691dae826b92e5b28d SRA:SRR5111384 https://www.encodeproject.org/files/ENCFF241ADB/@@download/ENCFF241ADB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF491SHN bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF241ADB, ENCFF417KCI, ENCFF807MUK 3204494593 ENCODE Processing Pipeline 9dfc9b0a8c4ebbb283ddbad1827a07ca https://www.encodeproject.org/files/ENCFF491SHN/@@download/ENCFF491SHN.bam hg19 released low read depth ENCFF979ZZF fastq reads ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF253UMC 1874870319 Michael Snyder, Stanford ef6ba3f3c0b7b73c4e1de039ebd8f3e9 SRA:SRR5111385 https://www.encodeproject.org/files/ENCFF979ZZF/@@download/ENCFF979ZZF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF253UMC fastq reads ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF979ZZF 1922885689 Michael Snyder, Stanford a9fc5e0d36c17ee18feed38ad7e62f7b SRA:SRR5111385 https://www.encodeproject.org/files/ENCFF253UMC/@@download/ENCFF253UMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF481BWV bam unfiltered alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF253UMC, ENCFF807MUK, ENCFF979ZZF 4195802543 ENCODE Processing Pipeline 20270588bc5b0a4adc926cb4cf7867d3 https://www.encodeproject.org/files/ENCFF481BWV/@@download/ENCFF481BWV.bam hg19 released low read depth ENCFF252BMK bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF253UMC, ENCFF807MUK, ENCFF979ZZF 3535728206 ENCODE Processing Pipeline f7ff08cbac609058ca20d48d99ffc643 https://www.encodeproject.org/files/ENCFF252BMK/@@download/ENCFF252BMK.bam hg19 released low read depth ENCFF905LBF bam unfiltered alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF253UMC, ENCFF643CGH, ENCFF979ZZF 4199978691 ENCODE Processing Pipeline f647049e649f891dfc4068e7e19c8b87 https://www.encodeproject.org/files/ENCFF905LBF/@@download/ENCFF905LBF.bam GRCh38 released low read depth ENCFF456UFJ bam unfiltered alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF241ADB, ENCFF417KCI, ENCFF643CGH 3839338314 ENCODE Processing Pipeline e453bfd62257e1c5c8bc02690608a188 https://www.encodeproject.org/files/ENCFF456UFJ/@@download/ENCFF456UFJ.bam GRCh38 released low read depth ENCFF247FGI bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF241ADB, ENCFF417KCI, ENCFF643CGH 3206495725 ENCODE Processing Pipeline cd6e60221edbe81057907ded3f2db369 https://www.encodeproject.org/files/ENCFF247FGI/@@download/ENCFF247FGI.bam GRCh38 released low read depth ENCFF488BQX bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF253UMC, ENCFF643CGH, ENCFF979ZZF 3538220359 ENCODE Processing Pipeline 144d8f477b45f9b045b4c4ef4c742b60 https://www.encodeproject.org/files/ENCFF488BQX/@@download/ENCFF488BQX.bam GRCh38 released low read depth ENCFF604FVF bigWig signal p-value ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF227IZS, ENCFF247FGI 939105655 ENCODE Processing Pipeline f8b15634347edbd43092fee62ee23f92 https://www.encodeproject.org/files/ENCFF604FVF/@@download/ENCFF604FVF.bigWig GRCh38 released low read depth ENCFF212AVX bigWig signal p-value ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF227IZS, ENCFF247FGI, ENCFF488BQX, ENCFF910IKB 1589553952 ENCODE Processing Pipeline f99c4479e11012bdc8ea15c650c918b0 https://www.encodeproject.org/files/ENCFF212AVX/@@download/ENCFF212AVX.bigWig GRCh38 released low read depth ENCFF069EVI bigWig fold change over control ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF488BQX, ENCFF910IKB 1118692882 ENCODE Processing Pipeline c9f8c8cdb0e0c809946e0ff9afdba127 https://www.encodeproject.org/files/ENCFF069EVI/@@download/ENCFF069EVI.bigWig GRCh38 released low read depth ENCFF227BJZ bigWig signal p-value ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF488BQX, ENCFF910IKB 1118314562 ENCODE Processing Pipeline 1584c77d93b8d1b2b57619472d4b48dc https://www.encodeproject.org/files/ENCFF227BJZ/@@download/ENCFF227BJZ.bigWig GRCh38 released low read depth ENCFF200ZNJ bigWig fold change over control ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF227IZS, ENCFF247FGI, ENCFF488BQX, ENCFF910IKB 1987691956 ENCODE Processing Pipeline c351e740da5e35ebd5ea3e9bd1366fd6 https://www.encodeproject.org/files/ENCFF200ZNJ/@@download/ENCFF200ZNJ.bigWig GRCh38 released low read depth ENCFF605VEC bigWig fold change over control ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF227IZS, ENCFF247FGI 1038334735 ENCODE Processing Pipeline f22b76982440fc4a249943f6ca872585 https://www.encodeproject.org/files/ENCFF605VEC/@@download/ENCFF605VEC.bigWig GRCh38 released low read depth ENCFF829KOI bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF227IZS, ENCFF247FGI 6523130 ENCODE Processing Pipeline a61313938b97b417a8b64b95393e2417 https://www.encodeproject.org/files/ENCFF829KOI/@@download/ENCFF829KOI.bed.gz GRCh38 released low read depth ENCFF638IIC bed narrowPeak optimal idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF266OPP, ENCFF419RSJ, ENCFF473CGS, ENCFF829KOI 168899 ENCODE Processing Pipeline a6fb144af17e1bf26776ea364011337f https://www.encodeproject.org/files/ENCFF638IIC/@@download/ENCFF638IIC.bed.gz GRCh38 released low read depth ENCFF337PJJ bigBed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF473CGS 13304849 ENCODE Processing Pipeline e6b431e665218b002fe74cf5f74864f9 https://www.encodeproject.org/files/ENCFF337PJJ/@@download/ENCFF337PJJ.bigBed GRCh38 released low read depth ENCFF318HHD bigBed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF266OPP 13104244 ENCODE Processing Pipeline 448466d8a45b72cf68a6d51d43f1a10f https://www.encodeproject.org/files/ENCFF318HHD/@@download/ENCFF318HHD.bigBed GRCh38 released low read depth ENCFF473CGS bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF488BQX, ENCFF910IKB 6592061 ENCODE Processing Pipeline f804384992c365c23482ac454e0e66fa https://www.encodeproject.org/files/ENCFF473CGS/@@download/ENCFF473CGS.bed.gz GRCh38 released low read depth ENCFF962DPU bigBed narrowPeak conservative idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF757UDB 270272 ENCODE Processing Pipeline 61143c3784aa8cdbce9ecc9578d7b6fe https://www.encodeproject.org/files/ENCFF962DPU/@@download/ENCFF962DPU.bigBed GRCh38 released low read depth ENCFF108SHW bigBed narrowPeak optimal idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF638IIC 413503 ENCODE Processing Pipeline 2a3606b5f40accbde35634e415fe52b1 https://www.encodeproject.org/files/ENCFF108SHW/@@download/ENCFF108SHW.bigBed GRCh38 released low read depth ENCFF266OPP bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF227IZS, ENCFF247FGI, ENCFF488BQX, ENCFF910IKB 7192496 ENCODE Processing Pipeline cf628c0d321ea29f9d3957e57740d46b https://www.encodeproject.org/files/ENCFF266OPP/@@download/ENCFF266OPP.bed.gz GRCh38 released low read depth ENCFF682SNI bigBed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF829KOI 13254858 ENCODE Processing Pipeline 7fec12e04d8bc172a94f9e0d95e640c0 https://www.encodeproject.org/files/ENCFF682SNI/@@download/ENCFF682SNI.bigBed GRCh38 released low read depth ENCFF757UDB bed narrowPeak conservative idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF266OPP, ENCFF419RSJ, ENCFF473CGS, ENCFF829KOI 117072 ENCODE Processing Pipeline d25836a0a038ff0426c857de4a6ee295 https://www.encodeproject.org/files/ENCFF757UDB/@@download/ENCFF757UDB.bed.gz GRCh38 released low read depth ENCFF847TRJ bigWig signal p-value ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF252BMK, ENCFF581ZJL 1067444688 ENCODE Processing Pipeline 22ae80de735cb349f3481661b28edb70 https://www.encodeproject.org/files/ENCFF847TRJ/@@download/ENCFF847TRJ.bigWig hg19 released low read depth ENCFF399ARI bigWig signal p-value ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF491SHN 1073765920 ENCODE Processing Pipeline d87b30ae336eb02acdbd4c3e6e9ece7f https://www.encodeproject.org/files/ENCFF399ARI/@@download/ENCFF399ARI.bigWig hg19 released low read depth ENCFF965NLF bigWig signal p-value ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF252BMK, ENCFF491SHN, ENCFF581ZJL 1813863762 ENCODE Processing Pipeline a6ccf0c7630bd4f22f9870add539fcac https://www.encodeproject.org/files/ENCFF965NLF/@@download/ENCFF965NLF.bigWig hg19 released low read depth ENCFF783POZ bigWig fold change over control ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF252BMK, ENCFF581ZJL 1107040024 ENCODE Processing Pipeline fdfdd507f047ab2b660eebdeac56d126 https://www.encodeproject.org/files/ENCFF783POZ/@@download/ENCFF783POZ.bigWig hg19 released low read depth ENCFF246VAY bigWig fold change over control ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF491SHN 1057456750 ENCODE Processing Pipeline 41b6d07a4450d1126ffbc303d50c1577 https://www.encodeproject.org/files/ENCFF246VAY/@@download/ENCFF246VAY.bigWig hg19 released low read depth ENCFF415WNK bigWig fold change over control ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF252BMK, ENCFF491SHN, ENCFF581ZJL 1988011028 ENCODE Processing Pipeline 61244aabba744af1de7a7906f5da16a2 https://www.encodeproject.org/files/ENCFF415WNK/@@download/ENCFF415WNK.bigWig hg19 released low read depth ENCFF053IVE bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF491SHN 6543669 ENCODE Processing Pipeline 90dfef52ac8083f3669e86d458fcf7e5 https://www.encodeproject.org/files/ENCFF053IVE/@@download/ENCFF053IVE.bed.gz hg19 released low read depth ENCFF380AQD bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF252BMK, ENCFF581ZJL 6596604 ENCODE Processing Pipeline adb8150c7c79973e22d5a89c5e5f8249 https://www.encodeproject.org/files/ENCFF380AQD/@@download/ENCFF380AQD.bed.gz hg19 released low read depth ENCFF782XQB bigBed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF380AQD 13298115 ENCODE Processing Pipeline 48cfeeed71b559c80a3626577a72cde1 https://www.encodeproject.org/files/ENCFF782XQB/@@download/ENCFF782XQB.bigBed hg19 released low read depth ENCFF269ZNE bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF252BMK, ENCFF491SHN, ENCFF581ZJL 7193815 ENCODE Processing Pipeline d541d28f5f064a3aecb26d090dfc28c0 https://www.encodeproject.org/files/ENCFF269ZNE/@@download/ENCFF269ZNE.bed.gz hg19 released low read depth ENCFF367AAK bigBed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF269ZNE 13098428 ENCODE Processing Pipeline b7d5e9e0fb30ae949ac4124134313390 https://www.encodeproject.org/files/ENCFF367AAK/@@download/ENCFF367AAK.bigBed hg19 released low read depth ENCFF360LZW bigBed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF053IVE 13231477 ENCODE Processing Pipeline 6ec36c50178bdd021ff7d826a9b1ca5b https://www.encodeproject.org/files/ENCFF360LZW/@@download/ENCFF360LZW.bigBed hg19 released low read depth ENCFF062BMU bed narrowPeak conservative idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF053IVE, ENCFF269ZNE, ENCFF380AQD 116065 ENCODE Processing Pipeline e692cab543695a6b11a1d2614b6a169e https://www.encodeproject.org/files/ENCFF062BMU/@@download/ENCFF062BMU.bed.gz hg19 released low read depth ENCFF738JZB bigBed narrowPeak conservative idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF062BMU 267017 ENCODE Processing Pipeline 76a0121aba830cb1a4329a2b62572300 https://www.encodeproject.org/files/ENCFF738JZB/@@download/ENCFF738JZB.bigBed hg19 released low read depth ENCFF456OAH bigBed narrowPeak optimal idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF080NBZ 406011 ENCODE Processing Pipeline f0fd60d3f4bac81ce324b683d0364169 https://www.encodeproject.org/files/ENCFF456OAH/@@download/ENCFF456OAH.bigBed hg19 released low read depth ENCFF080NBZ bed narrowPeak optimal idr thresholded peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF053IVE, ENCFF269ZNE, ENCFF380AQD 166325 ENCODE Processing Pipeline e76d0ae33614c1e309ad3b9500285627 https://www.encodeproject.org/files/ENCFF080NBZ/@@download/ENCFF080NBZ.bed.gz hg19 released low read depth ENCFF502MLY fastq reads ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF921RGY 4060491102 Michael Snyder, Stanford e23178ef4c345e06c67a5c1fff54d678 https://www.encodeproject.org/files/ENCFF502MLY/@@download/ENCFF502MLY.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF340GSU fastq reads ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF167GOB 4537465590 Michael Snyder, Stanford b0c0816279b20f36f5b72b85dccc5082 https://www.encodeproject.org/files/ENCFF340GSU/@@download/ENCFF340GSU.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF921RGY fastq reads ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF502MLY 4563481348 Michael Snyder, Stanford de03695ec1ee41430d0f945cd196f830 https://www.encodeproject.org/files/ENCFF921RGY/@@download/ENCFF921RGY.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF167GOB fastq reads ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF340GSU 4680478355 Michael Snyder, Stanford c7ded66dd3eabc3cbf335a44669cb57f https://www.encodeproject.org/files/ENCFF167GOB/@@download/ENCFF167GOB.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF929DJW bam unfiltered alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF167GOB, ENCFF340GSU, ENCFF807MUK 8186510537 ENCODE Processing Pipeline 139e44d96756361417b81dd8acdebf17 https://www.encodeproject.org/files/ENCFF929DJW/@@download/ENCFF929DJW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF338KIS bam unfiltered alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF502MLY, ENCFF807MUK, ENCFF921RGY 8004988844 ENCODE Processing Pipeline 3aebbdc0b35b7938d1fb75959a03737e https://www.encodeproject.org/files/ENCFF338KIS/@@download/ENCFF338KIS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF987QNU bam unfiltered alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF167GOB, ENCFF340GSU, ENCFF643CGH 8185563593 ENCODE Processing Pipeline 12b0347115e50c36cea95d3b3549c605 https://www.encodeproject.org/files/ENCFF987QNU/@@download/ENCFF987QNU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF169MTD bam unfiltered alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF502MLY, ENCFF643CGH, ENCFF921RGY 8010081457 ENCODE Processing Pipeline e34efa5808e9b99a1f717170b424f7e9 https://www.encodeproject.org/files/ENCFF169MTD/@@download/ENCFF169MTD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF470CJT bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF167GOB, ENCFF340GSU, ENCFF643CGH 3721118528 ENCODE Processing Pipeline 08caded1ce59894cdfca3ac3668bd6ac https://www.encodeproject.org/files/ENCFF470CJT/@@download/ENCFF470CJT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF203FSJ bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF167GOB, ENCFF340GSU, ENCFF807MUK 3718465608 ENCODE Processing Pipeline 2e371b7e96000cf24a5f7a4d166f94f9 https://www.encodeproject.org/files/ENCFF203FSJ/@@download/ENCFF203FSJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF696YRO bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF502MLY, ENCFF807MUK, ENCFF921RGY 4990668446 ENCODE Processing Pipeline b49483782c6b7ceec5acb4450af7326d https://www.encodeproject.org/files/ENCFF696YRO/@@download/ENCFF696YRO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF866BCZ bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF502MLY, ENCFF643CGH, ENCFF921RGY 4994792368 ENCODE Processing Pipeline 7ff723f2bcdf0612c6d4b6a7b6028a07 https://www.encodeproject.org/files/ENCFF866BCZ/@@download/ENCFF866BCZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF401MVV bigWig signal p-value ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF203FSJ 969328360 ENCODE Processing Pipeline cc940e936ea452848e4a4dd7db922b4f https://www.encodeproject.org/files/ENCFF401MVV/@@download/ENCFF401MVV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF075EVT bigWig signal p-value ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF203FSJ, ENCFF696YRO, ENCFF834TUP 2253774105 ENCODE Processing Pipeline 87ef5fb1c44295a71564c9c7a17495fe https://www.encodeproject.org/files/ENCFF075EVT/@@download/ENCFF075EVT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF340ANN bigWig signal p-value ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF696YRO, ENCFF834TUP 1926938727 ENCODE Processing Pipeline 228d3cfaa2786cbc6796b0aba60cc502 https://www.encodeproject.org/files/ENCFF340ANN/@@download/ENCFF340ANN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF957MVR bigWig fold change over control ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF203FSJ 1303821855 ENCODE Processing Pipeline a8f66e527afcd4fa040bee1b6a7a9674 https://www.encodeproject.org/files/ENCFF957MVR/@@download/ENCFF957MVR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF880CYC bigWig fold change over control ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF696YRO, ENCFF834TUP 1996727683 ENCODE Processing Pipeline 7dd18083fc400870c41ffcc7eb78ebc7 https://www.encodeproject.org/files/ENCFF880CYC/@@download/ENCFF880CYC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF458WXS bigWig fold change over control ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF203FSJ, ENCFF696YRO, ENCFF834TUP 2401151390 ENCODE Processing Pipeline df105241e8fcb67ec77de1949670b25b https://www.encodeproject.org/files/ENCFF458WXS/@@download/ENCFF458WXS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF263GIU bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF203FSJ 6683557 ENCODE Processing Pipeline 34dbe85b30546fabcbdbabec5003e12f https://www.encodeproject.org/files/ENCFF263GIU/@@download/ENCFF263GIU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF350ETZ bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF696YRO, ENCFF834TUP 7122842 ENCODE Processing Pipeline bbcecdde973b7e316a2696ae58a04710 https://www.encodeproject.org/files/ENCFF350ETZ/@@download/ENCFF350ETZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF551KDQ bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF203FSJ, ENCFF696YRO, ENCFF834TUP 7195368 ENCODE Processing Pipeline ca8fb63b6d9af0ecc85e855de3ed9368 https://www.encodeproject.org/files/ENCFF551KDQ/@@download/ENCFF551KDQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF019QRA bigBed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF263GIU 10851240 ENCODE Processing Pipeline 08d9bdf0162c9104e042e420b3855203 https://www.encodeproject.org/files/ENCFF019QRA/@@download/ENCFF019QRA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF919WDH bigBed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF350ETZ 10888442 ENCODE Processing Pipeline 6c480f8311e9caa36cbb67638bfae73c https://www.encodeproject.org/files/ENCFF919WDH/@@download/ENCFF919WDH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF597OTE bigBed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF551KDQ 12912345 ENCODE Processing Pipeline 8b98e54874fed634e4a1cf0d1b6d53f2 https://www.encodeproject.org/files/ENCFF597OTE/@@download/ENCFF597OTE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF734IEM bed narrowPeak conservative idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF263GIU, ENCFF350ETZ, ENCFF551KDQ 5890 ENCODE Processing Pipeline 045aff3f9d5a619f9998a93a525a5287 https://www.encodeproject.org/files/ENCFF734IEM/@@download/ENCFF734IEM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF591RVG bigBed narrowPeak conservative idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF734IEM 85235 ENCODE Processing Pipeline 452fb513c1f06bd5466c498e451abf6b https://www.encodeproject.org/files/ENCFF591RVG/@@download/ENCFF591RVG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF169XSG bigBed narrowPeak optimal idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF901AHW 114378 ENCODE Processing Pipeline 89adef53f8e9835947fc518d8c122355 https://www.encodeproject.org/files/ENCFF169XSG/@@download/ENCFF169XSG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF901AHW bed narrowPeak optimal idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF263GIU, ENCFF350ETZ, ENCFF551KDQ 22828 ENCODE Processing Pipeline 93c38af1d8e55bb2b54ec7fbc84d696c https://www.encodeproject.org/files/ENCFF901AHW/@@download/ENCFF901AHW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF233VUE bigWig signal p-value ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF470CJT, ENCFF790TAN 1016394863 ENCODE Processing Pipeline 558010d8e3e94d78e3fae867eb6a86db https://www.encodeproject.org/files/ENCFF233VUE/@@download/ENCFF233VUE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF660JXS bigWig signal p-value ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF790TAN, ENCFF866BCZ 1750734387 ENCODE Processing Pipeline 1b821b2d57778afdf273301b83ffab64 https://www.encodeproject.org/files/ENCFF660JXS/@@download/ENCFF660JXS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF177ECT bigWig signal p-value ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF470CJT, ENCFF712WXB, ENCFF790TAN, ENCFF866BCZ 2174138771 ENCODE Processing Pipeline 7bd4db77d72dda3f12fa4f76dbe0fb25 https://www.encodeproject.org/files/ENCFF177ECT/@@download/ENCFF177ECT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF222OSV bigWig fold change over control ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF470CJT, ENCFF790TAN 1316099989 ENCODE Processing Pipeline 4d9e39296d324877bca80df1960e098a https://www.encodeproject.org/files/ENCFF222OSV/@@download/ENCFF222OSV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF609TWF bigWig fold change over control ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF790TAN, ENCFF866BCZ 1988514687 ENCODE Processing Pipeline 374d5b43e22da4097efffb6510cf6e2e https://www.encodeproject.org/files/ENCFF609TWF/@@download/ENCFF609TWF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF243ALK bigWig fold change over control ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF470CJT, ENCFF712WXB, ENCFF790TAN, ENCFF866BCZ 2381758741 ENCODE Processing Pipeline a00202390d115fd45087510fc9b9cc39 https://www.encodeproject.org/files/ENCFF243ALK/@@download/ENCFF243ALK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF210AFY bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF790TAN, ENCFF866BCZ 7084349 ENCODE Processing Pipeline 13e3a74579567391dc3dc60bf58eac96 https://www.encodeproject.org/files/ENCFF210AFY/@@download/ENCFF210AFY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF507OGO bigBed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF844WVW 10858798 ENCODE Processing Pipeline 4edaf13335abfa666e170473256f2ac3 https://www.encodeproject.org/files/ENCFF507OGO/@@download/ENCFF507OGO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF844WVW bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF470CJT, ENCFF790TAN 6542160 ENCODE Processing Pipeline e85a487826b97a8bc004755b69257b80 https://www.encodeproject.org/files/ENCFF844WVW/@@download/ENCFF844WVW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF010YGU bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF470CJT, ENCFF712WXB, ENCFF790TAN, ENCFF866BCZ 7189899 ENCODE Processing Pipeline 9d100b3836a60eeb1567da2b61b68033 https://www.encodeproject.org/files/ENCFF010YGU/@@download/ENCFF010YGU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF183ZZV bigBed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF210AFY 10898646 ENCODE Processing Pipeline 2ed5d7f41fa07f3e87c9013c1f8f129f https://www.encodeproject.org/files/ENCFF183ZZV/@@download/ENCFF183ZZV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF361MUR bigBed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010YGU 12921966 ENCODE Processing Pipeline 25c49208dd5d9b2ee800d74b20621f34 https://www.encodeproject.org/files/ENCFF361MUR/@@download/ENCFF361MUR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF951OSW bed narrowPeak optimal idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010YGU, ENCFF210AFY, ENCFF419RSJ, ENCFF844WVW 19637 ENCODE Processing Pipeline 7b054009b99792b51a2ab0f32346881d https://www.encodeproject.org/files/ENCFF951OSW/@@download/ENCFF951OSW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF083PFA bigBed narrowPeak optimal idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF951OSW 109513 ENCODE Processing Pipeline e1d8df9ec9af184751f945481d555984 https://www.encodeproject.org/files/ENCFF083PFA/@@download/ENCFF083PFA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF266ALJ bed narrowPeak conservative idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010YGU, ENCFF210AFY, ENCFF419RSJ, ENCFF844WVW 5558 ENCODE Processing Pipeline c6c53c0afe38a2d324e0ada981433fe0 https://www.encodeproject.org/files/ENCFF266ALJ/@@download/ENCFF266ALJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF495LAW bigBed narrowPeak conservative idr thresholded peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF266ALJ 94476 ENCODE Processing Pipeline e5ccc8101d714dd263cbc547b5d933a4 https://www.encodeproject.org/files/ENCFF495LAW/@@download/ENCFF495LAW.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF796NRL bam unfiltered alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF272EEG, ENCFF531FHF, ENCFF807MUK 4481531680 ENCODE Processing Pipeline 2e8f5ebc37ae99a7b74a524b6d3464e5 https://www.encodeproject.org/files/ENCFF796NRL/@@download/ENCFF796NRL.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF459VLR bam unfiltered alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF545PSD, ENCFF807MUK, ENCFF959SCN 4266332372 ENCODE Processing Pipeline dcea9e77f4649bbacd28fee175e15b16 https://www.encodeproject.org/files/ENCFF459VLR/@@download/ENCFF459VLR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF959SCN fastq reads ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF545PSD 2000153143 Michael Snyder, Stanford 263940f5ae60c73dc0d1eb12156dce2d SRA:SRR5112449 https://www.encodeproject.org/files/ENCFF959SCN/@@download/ENCFF959SCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF272EEG fastq reads ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF531FHF 2061187507 Michael Snyder, Stanford 605fb868e1d04b1a9405842c53e1d70f SRA:SRR5112448 https://www.encodeproject.org/files/ENCFF272EEG/@@download/ENCFF272EEG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF531FHF fastq reads ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF272EEG 2098882941 Michael Snyder, Stanford 637135e153a100bdcf06c3492c6fd4d5 SRA:SRR5112448 https://www.encodeproject.org/files/ENCFF531FHF/@@download/ENCFF531FHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF545PSD fastq reads ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF959SCN 2038708114 Michael Snyder, Stanford 3dcbe878c24e3b1b5bcf6789874fc9b4 SRA:SRR5112449 https://www.encodeproject.org/files/ENCFF545PSD/@@download/ENCFF545PSD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF666QOX bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF545PSD, ENCFF807MUK, ENCFF959SCN 3298498544 ENCODE Processing Pipeline 587537b365f05be20a0773f085dd44d2 https://www.encodeproject.org/files/ENCFF666QOX/@@download/ENCFF666QOX.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF845QLW bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF272EEG, ENCFF531FHF, ENCFF807MUK 3614444905 ENCODE Processing Pipeline 1ab784b4a39eb8f071e113055d544323 https://www.encodeproject.org/files/ENCFF845QLW/@@download/ENCFF845QLW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF657KLA bigWig signal p-value ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF845QLW 1047847605 ENCODE Processing Pipeline f5be7150e087ac88ee995b2129128e57 https://www.encodeproject.org/files/ENCFF657KLA/@@download/ENCFF657KLA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF730ROC bigWig signal p-value ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF666QOX 1071034550 ENCODE Processing Pipeline b9f7d603b8deeef6174cf5bb2c128ff0 https://www.encodeproject.org/files/ENCFF730ROC/@@download/ENCFF730ROC.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF042PRZ bigWig fold change over control ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF845QLW 1114246671 ENCODE Processing Pipeline 0122cad924216a5816f474aef048a40f https://www.encodeproject.org/files/ENCFF042PRZ/@@download/ENCFF042PRZ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF612BZJ bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF845QLW 6936134 ENCODE Processing Pipeline d72f450110faad9e7f9859b35d269540 https://www.encodeproject.org/files/ENCFF612BZJ/@@download/ENCFF612BZJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF541PYW bigWig signal p-value ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666QOX, ENCFF845QLW 1894193513 ENCODE Processing Pipeline f7cf635ec51b1c1208110d02b99f1669 https://www.encodeproject.org/files/ENCFF541PYW/@@download/ENCFF541PYW.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF345HKX bigWig fold change over control ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF666QOX 990090389 ENCODE Processing Pipeline 0917ac0b7830313b88b4309a01054644 https://www.encodeproject.org/files/ENCFF345HKX/@@download/ENCFF345HKX.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF348UKA bigWig fold change over control ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666QOX, ENCFF845QLW 1946562886 ENCODE Processing Pipeline 2d810012db8e947a2b94cc3970c040fd https://www.encodeproject.org/files/ENCFF348UKA/@@download/ENCFF348UKA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF670NDN bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF666QOX 7008065 ENCODE Processing Pipeline fb61bad4afd6e625fe1b841d2b318320 https://www.encodeproject.org/files/ENCFF670NDN/@@download/ENCFF670NDN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF845UBO bed narrowPeak conservative idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF612BZJ, ENCFF670NDN, ENCFF763UDO 450573 ENCODE Processing Pipeline b50abfe1e7a4c0e6033f60d10886aea4 https://www.encodeproject.org/files/ENCFF845UBO/@@download/ENCFF845UBO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF772LCO bigBed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF763UDO 12738828 ENCODE Processing Pipeline 70f6dc3048454b40506fdcc93c20113d https://www.encodeproject.org/files/ENCFF772LCO/@@download/ENCFF772LCO.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF937VZI bed narrowPeak optimal idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF612BZJ, ENCFF670NDN, ENCFF763UDO 484306 ENCODE Processing Pipeline 42f2932c2c3ab72016c12df15687dfd1 https://www.encodeproject.org/files/ENCFF937VZI/@@download/ENCFF937VZI.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF763UDO bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666QOX, ENCFF845QLW 7275287 ENCODE Processing Pipeline 559de1fbe59b62a1e14173f0fb447d3a https://www.encodeproject.org/files/ENCFF763UDO/@@download/ENCFF763UDO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF029UMQ bigBed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF612BZJ 13134488 ENCODE Processing Pipeline b8dcc965e5aeb8e4ac41f658acba9ccc https://www.encodeproject.org/files/ENCFF029UMQ/@@download/ENCFF029UMQ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF067PYG bigBed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF670NDN 12979603 ENCODE Processing Pipeline 3d721650e1f0ac87416c5c1ad0823dc4 https://www.encodeproject.org/files/ENCFF067PYG/@@download/ENCFF067PYG.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF742EGO bigBed narrowPeak conservative idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF845UBO 1257442 ENCODE Processing Pipeline ff2bffd9ea3661acddb0212ae3b2e2ca https://www.encodeproject.org/files/ENCFF742EGO/@@download/ENCFF742EGO.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF721SIB bigBed narrowPeak optimal idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF937VZI 1114826 ENCODE Processing Pipeline f3afcf11f068b05afea9416042878e4c https://www.encodeproject.org/files/ENCFF721SIB/@@download/ENCFF721SIB.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF806AHN bam unfiltered alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF545PSD, ENCFF643CGH, ENCFF959SCN 4266712610 ENCODE Processing Pipeline ec4d1da9732400b08a3edef5eb0c8f4b https://www.encodeproject.org/files/ENCFF806AHN/@@download/ENCFF806AHN.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF331RLM bam unfiltered alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF272EEG, ENCFF531FHF, ENCFF643CGH 4484445754 ENCODE Processing Pipeline 8ea4108866030df604a73f298b2a781d https://www.encodeproject.org/files/ENCFF331RLM/@@download/ENCFF331RLM.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF559BJS bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF545PSD, ENCFF643CGH, ENCFF959SCN 3302132368 ENCODE Processing Pipeline 0b28363d94f9b99bcb857b7d993d6229 https://www.encodeproject.org/files/ENCFF559BJS/@@download/ENCFF559BJS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF725WJS bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF272EEG, ENCFF531FHF, ENCFF643CGH 3618037374 ENCODE Processing Pipeline 1664a10ba60945c7f81ba008468ec82b https://www.encodeproject.org/files/ENCFF725WJS/@@download/ENCFF725WJS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF125SRD bigWig signal p-value ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF725WJS, ENCFF910IKB 1154361726 ENCODE Processing Pipeline 895b56de0a1406e9c894cc26b0665734 https://www.encodeproject.org/files/ENCFF125SRD/@@download/ENCFF125SRD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF277NDO bigWig signal p-value ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF559BJS 871111299 ENCODE Processing Pipeline e7fe3986e65bbe7661a8ef65c13c4372 https://www.encodeproject.org/files/ENCFF277NDO/@@download/ENCFF277NDO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF399YWD bigWig signal p-value ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227IZS, ENCFF559BJS, ENCFF725WJS, ENCFF910IKB 1906544548 ENCODE Processing Pipeline 17c93cefffbe046e51c5210f7ee4418d https://www.encodeproject.org/files/ENCFF399YWD/@@download/ENCFF399YWD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF959IQT bigWig fold change over control ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF725WJS, ENCFF910IKB 1103539854 ENCODE Processing Pipeline 428b9a754ace81a0e1cd9bcc0b0bcc20 https://www.encodeproject.org/files/ENCFF959IQT/@@download/ENCFF959IQT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF575MUQ bigWig fold change over control ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF559BJS 994012941 ENCODE Processing Pipeline 21d805bf379226a22f0f628fcd26dd16 https://www.encodeproject.org/files/ENCFF575MUQ/@@download/ENCFF575MUQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF311RLQ bigWig fold change over control ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227IZS, ENCFF559BJS, ENCFF725WJS, ENCFF910IKB 1943552692 ENCODE Processing Pipeline b87e4aa6ea5e71d8e8d71ce008b167e5 https://www.encodeproject.org/files/ENCFF311RLQ/@@download/ENCFF311RLQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF859OSW bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF725WJS, ENCFF910IKB 6826738 ENCODE Processing Pipeline 4d89c51618b3622ca92cdefb0e1924e9 https://www.encodeproject.org/files/ENCFF859OSW/@@download/ENCFF859OSW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF883AML bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF227IZS, ENCFF559BJS 6876282 ENCODE Processing Pipeline 2cf32c5d73ae6995667389fcc3ac87c5 https://www.encodeproject.org/files/ENCFF883AML/@@download/ENCFF883AML.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF676PAG bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF227IZS, ENCFF559BJS, ENCFF725WJS, ENCFF910IKB 7206574 ENCODE Processing Pipeline 2fad57a1780724f2da652eee6f8b7a15 https://www.encodeproject.org/files/ENCFF676PAG/@@download/ENCFF676PAG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF256PMF bigBed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF859OSW 13083012 ENCODE Processing Pipeline bc2be28689993a59d039bff2b169eb3d https://www.encodeproject.org/files/ENCFF256PMF/@@download/ENCFF256PMF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF629GGE bigBed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF883AML 12909874 ENCODE Processing Pipeline b07aef0faaef217eaf1f7032a3f78848 https://www.encodeproject.org/files/ENCFF629GGE/@@download/ENCFF629GGE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF613GYA bigBed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF676PAG 12674402 ENCODE Processing Pipeline 47a7baded9735eafe96af277297f1aa3 https://www.encodeproject.org/files/ENCFF613GYA/@@download/ENCFF613GYA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF909KNE bed narrowPeak conservative idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF676PAG, ENCFF859OSW, ENCFF883AML 430233 ENCODE Processing Pipeline 4c699a00b4ecc06deba87ba13230b7a3 https://www.encodeproject.org/files/ENCFF909KNE/@@download/ENCFF909KNE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF757FLN bigBed narrowPeak conservative idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF909KNE 1024002 ENCODE Processing Pipeline 3df4ea8d3d1b42965c75776aba9ec8c2 https://www.encodeproject.org/files/ENCFF757FLN/@@download/ENCFF757FLN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF881ONC bed narrowPeak optimal idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF676PAG, ENCFF859OSW, ENCFF883AML 459016 ENCODE Processing Pipeline f8a5691141a23717efbeb8a04ca5463d https://www.encodeproject.org/files/ENCFF881ONC/@@download/ENCFF881ONC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF573RGR bigBed narrowPeak optimal idr thresholded peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF881ONC 1079051 ENCODE Processing Pipeline 5e537a9cdd81938b406571e04a9737e6 https://www.encodeproject.org/files/ENCFF573RGR/@@download/ENCFF573RGR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF507REW fastq reads ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF740JJX 2918201430 Michael Snyder, Stanford dda906a04de81ba594a3309c9aeb5542 SRA:SRR5111038 https://www.encodeproject.org/files/ENCFF507REW/@@download/ENCFF507REW.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking ENCFF740JJX fastq reads ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF507REW 2656064962 Michael Snyder, Stanford 5038b813bf63efe764ac2d8520186b44 SRA:SRR5111038 https://www.encodeproject.org/files/ENCFF740JJX/@@download/ENCFF740JJX.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking ENCFF576YEJ fastq reads ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF088KVK 4249418964 Michael Snyder, Stanford f277a866800f5768fc8f5dced3ccf551 SRA:SRR5111037 https://www.encodeproject.org/files/ENCFF576YEJ/@@download/ENCFF576YEJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking ENCFF088KVK fastq reads ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF576YEJ 4001050219 Michael Snyder, Stanford b08ad475c195484bcca29ac8cd21465c SRA:SRR5111037 https://www.encodeproject.org/files/ENCFF088KVK/@@download/ENCFF088KVK.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking ENCFF769FYR bam unfiltered alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF507REW, ENCFF643CGH, ENCFF740JJX 5374018802 ENCODE Processing Pipeline fbcea1375197560b4ed98f5caffe845d https://www.encodeproject.org/files/ENCFF769FYR/@@download/ENCFF769FYR.bam GRCh38 released mild to moderate bottlenecking ENCFF055PMZ bam unfiltered alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF507REW, ENCFF740JJX, ENCFF807MUK 5368239134 ENCODE Processing Pipeline 47f952d2d46d34dec4083c6adbcdcdee https://www.encodeproject.org/files/ENCFF055PMZ/@@download/ENCFF055PMZ.bam hg19 released mild to moderate bottlenecking ENCFF653KCU bam unfiltered alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF088KVK, ENCFF576YEJ, ENCFF643CGH 7623287335 ENCODE Processing Pipeline 56d909ed82bb97d8d0c48aedf55d4048 https://www.encodeproject.org/files/ENCFF653KCU/@@download/ENCFF653KCU.bam GRCh38 released mild to moderate bottlenecking ENCFF474DCF bam unfiltered alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF088KVK, ENCFF576YEJ, ENCFF807MUK 7616005957 ENCODE Processing Pipeline f043cd2a29f7d8b3a25ec2a35c389a17 https://www.encodeproject.org/files/ENCFF474DCF/@@download/ENCFF474DCF.bam hg19 released mild to moderate bottlenecking ENCFF432NAV bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF507REW, ENCFF643CGH, ENCFF740JJX 4114281266 ENCODE Processing Pipeline 121323bf20f907d85256b964b267edeb https://www.encodeproject.org/files/ENCFF432NAV/@@download/ENCFF432NAV.bam GRCh38 released mild to moderate bottlenecking ENCFF991XPF bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF507REW, ENCFF740JJX, ENCFF807MUK 4110916727 ENCODE Processing Pipeline e1822970535e61b2403a059b37bf29d1 https://www.encodeproject.org/files/ENCFF991XPF/@@download/ENCFF991XPF.bam hg19 released mild to moderate bottlenecking ENCFF824HGA bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF088KVK, ENCFF576YEJ, ENCFF643CGH 5369833028 ENCODE Processing Pipeline 35828711a0515cabf886ffaa73337d40 https://www.encodeproject.org/files/ENCFF824HGA/@@download/ENCFF824HGA.bam GRCh38 released mild to moderate bottlenecking ENCFF170DKK bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF088KVK, ENCFF576YEJ, ENCFF807MUK 5363887310 ENCODE Processing Pipeline d29facd817ea3c935ad4afb0deda34ee https://www.encodeproject.org/files/ENCFF170DKK/@@download/ENCFF170DKK.bam hg19 released mild to moderate bottlenecking ENCFF405AHX bigWig signal p-value ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF991XPF 1151058378 ENCODE Processing Pipeline 5d7d71a8cdcd28cc67efbe02e7c16fb6 https://www.encodeproject.org/files/ENCFF405AHX/@@download/ENCFF405AHX.bigWig hg19 released mild to moderate bottlenecking ENCFF079GQA bigWig signal p-value ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP 1805212214 ENCODE Processing Pipeline 2c1c34b0a8da461ae641297ac1276e35 https://www.encodeproject.org/files/ENCFF079GQA/@@download/ENCFF079GQA.bigWig hg19 released mild to moderate bottlenecking ENCFF980RSQ bigWig signal p-value ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP, ENCFF991XPF 2285771321 ENCODE Processing Pipeline eab889c39476daaca50aa4e1c536cb11 https://www.encodeproject.org/files/ENCFF980RSQ/@@download/ENCFF980RSQ.bigWig hg19 released mild to moderate bottlenecking ENCFF998THE bigWig fold change over control ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP 1990922654 ENCODE Processing Pipeline 4e598c784eeb87f8f6df7ca53229f5e2 https://www.encodeproject.org/files/ENCFF998THE/@@download/ENCFF998THE.bigWig hg19 released mild to moderate bottlenecking ENCFF665NOV bigWig fold change over control ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF991XPF 1357061586 ENCODE Processing Pipeline bb8b23512193e913026527a0aaa9cd59 https://www.encodeproject.org/files/ENCFF665NOV/@@download/ENCFF665NOV.bigWig hg19 released mild to moderate bottlenecking ENCFF087XWL bigWig fold change over control ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP, ENCFF991XPF 2449085590 ENCODE Processing Pipeline e52b5aadffc579e0370600f6a88ae08f https://www.encodeproject.org/files/ENCFF087XWL/@@download/ENCFF087XWL.bigWig hg19 released mild to moderate bottlenecking ENCFF216MFC bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP 7126296 ENCODE Processing Pipeline ba5c63ea5c27ef70e0538c87ad9ca064 https://www.encodeproject.org/files/ENCFF216MFC/@@download/ENCFF216MFC.bed.gz hg19 released mild to moderate bottlenecking ENCFF069GYB bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP, ENCFF991XPF 7283592 ENCODE Processing Pipeline 97b6ccb994b891eb94263b3ec1c98b26 https://www.encodeproject.org/files/ENCFF069GYB/@@download/ENCFF069GYB.bed.gz hg19 released mild to moderate bottlenecking ENCFF869KQW bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF991XPF 6932464 ENCODE Processing Pipeline 3273e779c299bdeae6219e06b81c38f9 https://www.encodeproject.org/files/ENCFF869KQW/@@download/ENCFF869KQW.bed.gz hg19 released mild to moderate bottlenecking ENCFF273SYC bigBed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF216MFC 13209501 ENCODE Processing Pipeline 435559a3d74bf6153dc14501862c39d5 https://www.encodeproject.org/files/ENCFF273SYC/@@download/ENCFF273SYC.bigBed hg19 released mild to moderate bottlenecking ENCFF241QUJ bigBed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF069GYB 13016490 ENCODE Processing Pipeline b67921d8018b609fbfc6da4ece7a23a6 https://www.encodeproject.org/files/ENCFF241QUJ/@@download/ENCFF241QUJ.bigBed hg19 released mild to moderate bottlenecking ENCFF295WNA bigBed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF869KQW 13084839 ENCODE Processing Pipeline bc59fc5c247a82e9ababe697f18db18e https://www.encodeproject.org/files/ENCFF295WNA/@@download/ENCFF295WNA.bigBed hg19 released mild to moderate bottlenecking ENCFF201PDX bed narrowPeak conservative idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF069GYB, ENCFF216MFC, ENCFF869KQW 197690 ENCODE Processing Pipeline 41807fca2427bef06cc8ad3d2d7dab4a https://www.encodeproject.org/files/ENCFF201PDX/@@download/ENCFF201PDX.bed.gz hg19 released mild to moderate bottlenecking ENCFF508JUG bigBed narrowPeak conservative idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF201PDX 445719 ENCODE Processing Pipeline 0336dae9ce46571a2f6521e3d0c39b2d https://www.encodeproject.org/files/ENCFF508JUG/@@download/ENCFF508JUG.bigBed hg19 released mild to moderate bottlenecking ENCFF859FVX bed narrowPeak optimal idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF069GYB, ENCFF216MFC, ENCFF869KQW 270063 ENCODE Processing Pipeline 49b2fe762e83e323d77be75057dea680 https://www.encodeproject.org/files/ENCFF859FVX/@@download/ENCFF859FVX.bed.gz hg19 released mild to moderate bottlenecking ENCFF880SQP bigBed narrowPeak optimal idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF859FVX 565766 ENCODE Processing Pipeline 4e6a400ceea0d2b4f358b544ed8061d4 https://www.encodeproject.org/files/ENCFF880SQP/@@download/ENCFF880SQP.bigBed hg19 released mild to moderate bottlenecking ENCFF268XIT bigWig signal p-value ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF824HGA 1821146322 ENCODE Processing Pipeline 643be3314caaa2918fbe79ebc0f2c058 https://www.encodeproject.org/files/ENCFF268XIT/@@download/ENCFF268XIT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF754LZW bigWig signal p-value ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF432NAV, ENCFF790TAN 1149828891 ENCODE Processing Pipeline 0b77f69d77a252b756cea1d07a013181 https://www.encodeproject.org/files/ENCFF754LZW/@@download/ENCFF754LZW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF150OVG bigWig signal p-value ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF432NAV, ENCFF712WXB, ENCFF790TAN, ENCFF824HGA 2168379269 ENCODE Processing Pipeline 1a6f28ca10928e306de3843ce85e7161 https://www.encodeproject.org/files/ENCFF150OVG/@@download/ENCFF150OVG.bigWig GRCh38 released mild to moderate bottlenecking ENCFF809NWL bigWig fold change over control ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF824HGA 1992916429 ENCODE Processing Pipeline 8f45f5ab888564720398412848eae82c https://www.encodeproject.org/files/ENCFF809NWL/@@download/ENCFF809NWL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF189DSB bigWig fold change over control ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF432NAV, ENCFF790TAN 1354749664 ENCODE Processing Pipeline 5ae6d31f816b3149af49a66c22ee49d8 https://www.encodeproject.org/files/ENCFF189DSB/@@download/ENCFF189DSB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF653DDA bigWig fold change over control ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF432NAV, ENCFF712WXB, ENCFF790TAN, ENCFF824HGA 2481992979 ENCODE Processing Pipeline 90598ad7fc8e7868da42c8cb444ed869 https://www.encodeproject.org/files/ENCFF653DDA/@@download/ENCFF653DDA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF306PQS bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF432NAV, ENCFF712WXB, ENCFF790TAN, ENCFF824HGA 7284955 ENCODE Processing Pipeline 84602e359e6d8d9af6ac13aaccb28634 https://www.encodeproject.org/files/ENCFF306PQS/@@download/ENCFF306PQS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF356NXU bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF432NAV, ENCFF790TAN 6852566 ENCODE Processing Pipeline b53a79ed2a69b2a47c2c8c6eeb3c4ee8 https://www.encodeproject.org/files/ENCFF356NXU/@@download/ENCFF356NXU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF503VRU bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF824HGA 7084361 ENCODE Processing Pipeline b7b13d8a2decce1200c7cb5a28b6c1ce https://www.encodeproject.org/files/ENCFF503VRU/@@download/ENCFF503VRU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF610SGG bigBed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF356NXU 13096253 ENCODE Processing Pipeline a99eb9efb2725c34ca9729f53e5234cb https://www.encodeproject.org/files/ENCFF610SGG/@@download/ENCFF610SGG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF694SHT bigBed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF503VRU 13221840 ENCODE Processing Pipeline cd1e284c67c1a7d89b377cde5817ee20 https://www.encodeproject.org/files/ENCFF694SHT/@@download/ENCFF694SHT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF987LZR bigBed narrowPeak conservative idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF077WVW 447468 ENCODE Processing Pipeline 918b1e959728a39251d38fcbbe1f4a02 https://www.encodeproject.org/files/ENCFF987LZR/@@download/ENCFF987LZR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF343CLB bigBed narrowPeak optimal idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF646MEF 578541 ENCODE Processing Pipeline 7dceb9f6d1b86fe07ae804f37ad689bb https://www.encodeproject.org/files/ENCFF343CLB/@@download/ENCFF343CLB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF752GJR bigBed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF306PQS 13029828 ENCODE Processing Pipeline b6c64d2a14198d8106d8f26717070f65 https://www.encodeproject.org/files/ENCFF752GJR/@@download/ENCFF752GJR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF077WVW bed narrowPeak conservative idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF306PQS, ENCFF356NXU, ENCFF419RSJ, ENCFF503VRU 198767 ENCODE Processing Pipeline 96297eddddcd093d759d57804f8de5b0 https://www.encodeproject.org/files/ENCFF077WVW/@@download/ENCFF077WVW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF646MEF bed narrowPeak optimal idr thresholded peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF306PQS, ENCFF356NXU, ENCFF419RSJ, ENCFF503VRU 278256 ENCODE Processing Pipeline fa755334fe03f026bea8a7d699fe31ca https://www.encodeproject.org/files/ENCFF646MEF/@@download/ENCFF646MEF.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF774ZKP fastq reads ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF569YBX 4021222613 Richard Myers, HAIB 5ea9b79c0c68ea3e4c230ef7216e6baf https://www.encodeproject.org/files/ENCFF774ZKP/@@download/ENCFF774ZKP.fastq.gz Illumina HiSeq 2000 /files/ENCFF339GDO/ released antibody characterized with exemption experiment not submitted to GEO ENCFF569YBX fastq reads ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF774ZKP 4185713599 Richard Myers, HAIB 61799e593be56e525bc613a20cff3c01 https://www.encodeproject.org/files/ENCFF569YBX/@@download/ENCFF569YBX.fastq.gz Illumina HiSeq 2000 /files/ENCFF997CZF/ released antibody characterized with exemption experiment not submitted to GEO ENCFF897NGB bam unfiltered alignments ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF569YBX, ENCFF643CGH, ENCFF774ZKP 8889139472 ENCODE Processing Pipeline 68461bee49dcf661ff6c3d3334e1050a https://www.encodeproject.org/files/ENCFF897NGB/@@download/ENCFF897NGB.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF977PWY bam unfiltered alignments ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF569YBX, ENCFF774ZKP, ENCFF807MUK 8875747691 ENCODE Processing Pipeline 4264d1283f55081c75fc4fc1b3ca3538 https://www.encodeproject.org/files/ENCFF977PWY/@@download/ENCFF977PWY.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF629VOX bam alignments ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF569YBX, ENCFF774ZKP, ENCFF807MUK 6585537785 ENCODE Processing Pipeline 2b49dfd04ddd71d475598af245cb6e92 https://www.encodeproject.org/files/ENCFF629VOX/@@download/ENCFF629VOX.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF459XGP bam alignments ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF569YBX, ENCFF643CGH, ENCFF774ZKP 6585661801 ENCODE Processing Pipeline 4e665c215727ea8ccdf410ba6e5ab5b9 https://www.encodeproject.org/files/ENCFF459XGP/@@download/ENCFF459XGP.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF518RBV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF229NAV 2139128 ENCODE Processing Pipeline 93dec22a46a82f1beb89a0e7f0f256c3 https://www.encodeproject.org/files/ENCFF518RBV/@@download/ENCFF518RBV.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF996MPK bigWig fold change over control ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF459XGP, ENCFF518UMI 1775529347 ENCODE Processing Pipeline f275f48759dafe908b898a9155b7d0c1 https://www.encodeproject.org/files/ENCFF996MPK/@@download/ENCFF996MPK.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF411YXA bed narrowPeak peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF459XGP, ENCFF518UMI 7128601 ENCODE Processing Pipeline 0f5421783fae00fd425bfde43281a81f https://www.encodeproject.org/files/ENCFF411YXA/@@download/ENCFF411YXA.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF815KYP bigBed narrowPeak peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF411YXA 12538511 ENCODE Processing Pipeline 3caf7095af42d26f7b7d8876dd896351 https://www.encodeproject.org/files/ENCFF815KYP/@@download/ENCFF815KYP.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF276XLL bed narrowPeak peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629VOX, ENCFF978EZN 7223230 ENCODE Processing Pipeline 49e79d9ec02c502d92c45e7ff67c44cd https://www.encodeproject.org/files/ENCFF276XLL/@@download/ENCFF276XLL.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF651FPL bigBed narrowPeak peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF276XLL 12648245 ENCODE Processing Pipeline 19b708cc9f808f0a8b0a649f62e2d3ea https://www.encodeproject.org/files/ENCFF651FPL/@@download/ENCFF651FPL.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF223DJX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF411YXA, ENCFF419RSJ 999492 ENCODE Processing Pipeline c59510a1099b89161a1601b70ae8bb09 https://www.encodeproject.org/files/ENCFF223DJX/@@download/ENCFF223DJX.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF619RKX bigWig fold change over control ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629VOX, ENCFF978EZN 1736507023 ENCODE Processing Pipeline 5a97d428f9743c028f839d68e6a3c8f4 https://www.encodeproject.org/files/ENCFF619RKX/@@download/ENCFF619RKX.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF277NOP bigWig signal p-value ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF459XGP, ENCFF518UMI 1653101795 ENCODE Processing Pipeline 2427dfed14ef176107ccc63c4f462e62 https://www.encodeproject.org/files/ENCFF277NOP/@@download/ENCFF277NOP.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF416DBW bigWig signal p-value ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629VOX, ENCFF978EZN 1640925478 ENCODE Processing Pipeline d5f583b15cc60ee4a3d521b8909e630c https://www.encodeproject.org/files/ENCFF416DBW/@@download/ENCFF416DBW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF229NAV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF276XLL 1025791 ENCODE Processing Pipeline 21ee653ad4a701283601d327d84e101c https://www.encodeproject.org/files/ENCFF229NAV/@@download/ENCFF229NAV.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF992LHP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF223DJX 2092808 ENCODE Processing Pipeline 5de59edd52379f8db2834a65799ab318 https://www.encodeproject.org/files/ENCFF992LHP/@@download/ENCFF992LHP.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF024HXP fastq reads ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF480IZA 2412694708 Michael Snyder, Stanford 58a176ea8b65109ba1a1ed8872c4459c https://www.encodeproject.org/files/ENCFF024HXP/@@download/ENCFF024HXP.fastq.gz Illumina HiSeq 4000 /files/ENCFF957EOY/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF480IZA fastq reads ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF024HXP 2849079467 Michael Snyder, Stanford b686fec602e42dd11cae19e91ac53637 https://www.encodeproject.org/files/ENCFF480IZA/@@download/ENCFF480IZA.fastq.gz Illumina HiSeq 4000 /files/ENCFF893JHQ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF300ZPP bam unfiltered alignments ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF024HXP, ENCFF480IZA, ENCFF643CGH 4434809894 ENCODE Processing Pipeline 18119b8e22d3c86ec1538605615ed049 https://www.encodeproject.org/files/ENCFF300ZPP/@@download/ENCFF300ZPP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF646WTU bam alignments ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF024HXP, ENCFF480IZA, ENCFF643CGH 2421878080 ENCODE Processing Pipeline 82c9d0aa86c2909378b404bba939fd94 https://www.encodeproject.org/files/ENCFF646WTU/@@download/ENCFF646WTU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF307HCG bam unfiltered alignments ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF024HXP, ENCFF480IZA, ENCFF807MUK 4437475282 ENCODE Processing Pipeline 95db44ce8f055403c3d2717c050c45b9 https://www.encodeproject.org/files/ENCFF307HCG/@@download/ENCFF307HCG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF358FRE bam alignments ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF024HXP, ENCFF480IZA, ENCFF807MUK 2420157576 ENCODE Processing Pipeline 0fe6bc382dc4732d837f66cf812091e6 https://www.encodeproject.org/files/ENCFF358FRE/@@download/ENCFF358FRE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF330FCX bigWig signal p-value ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF358FRE, ENCFF683KMT 981160810 ENCODE Processing Pipeline 7c874849535767f9b2deb65f020958d9 https://www.encodeproject.org/files/ENCFF330FCX/@@download/ENCFF330FCX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF147ZMU bigWig fold change over control ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF358FRE, ENCFF683KMT 892612263 ENCODE Processing Pipeline 658dee9abc6486ac2f15f80e1c3c4989 https://www.encodeproject.org/files/ENCFF147ZMU/@@download/ENCFF147ZMU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF515FNG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF181YOI 1082650 ENCODE Processing Pipeline 9b05668eb9f79ac2ff3136e5c3ecb8fa https://www.encodeproject.org/files/ENCFF515FNG/@@download/ENCFF515FNG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF181YOI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF715OSJ 601686 ENCODE Processing Pipeline ad482276f3cc80cecffe6f376a73a0a6 https://www.encodeproject.org/files/ENCFF181YOI/@@download/ENCFF181YOI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF728XPV bigBed narrowPeak peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF715OSJ 11526756 ENCODE Processing Pipeline 60e47e0749aff46333219ff3145a2742 https://www.encodeproject.org/files/ENCFF728XPV/@@download/ENCFF728XPV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF715OSJ bed narrowPeak peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF358FRE, ENCFF683KMT 6005721 ENCODE Processing Pipeline 452c1dfa172cd88e6593b974ca9487f3 https://www.encodeproject.org/files/ENCFF715OSJ/@@download/ENCFF715OSJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF482OSJ bigWig signal p-value ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF628SZJ, ENCFF646WTU 983134476 ENCODE Processing Pipeline f18d8c630acbdd1efc46e444bc3e7bc3 https://www.encodeproject.org/files/ENCFF482OSJ/@@download/ENCFF482OSJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF112QRR bigWig fold change over control ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF628SZJ, ENCFF646WTU 882898927 ENCODE Processing Pipeline 5366b5e93eb163e45b1ec542a8ff642b https://www.encodeproject.org/files/ENCFF112QRR/@@download/ENCFF112QRR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF287QRZ bed narrowPeak peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF628SZJ, ENCFF646WTU 6039552 ENCODE Processing Pipeline 0987df5d6e391f0c17b2aa445124fcf7 https://www.encodeproject.org/files/ENCFF287QRZ/@@download/ENCFF287QRZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF261IHN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF287QRZ, ENCFF419RSJ 612545 ENCODE Processing Pipeline 937ebc2c947fae89ff14d16b41c81420 https://www.encodeproject.org/files/ENCFF261IHN/@@download/ENCFF261IHN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF163PKO bigBed narrowPeak peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF287QRZ 11576173 ENCODE Processing Pipeline 12e52e3b073f374115a89736ca933e18 https://www.encodeproject.org/files/ENCFF163PKO/@@download/ENCFF163PKO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF106CQG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF261IHN 1099040 ENCODE Processing Pipeline 4304d7981546923802b7c7ba8ddb9c89 https://www.encodeproject.org/files/ENCFF106CQG/@@download/ENCFF106CQG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF303QKQ fastq reads ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 1 101 paired-ended 1 ENCFF239KLD 2771036540 Michael Snyder, Stanford 12fbb84c0514ac03adbe68007ab5614d https://www.encodeproject.org/files/ENCFF303QKQ/@@download/ENCFF303QKQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF314CVE/ released experiment not submitted to GEO ENCFF912XOK fastq reads ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 1 101 paired-ended 1 ENCFF933JZR 2293439933 Michael Snyder, Stanford bd6e5595d50a67b926eb8623b56454e8 https://www.encodeproject.org/files/ENCFF912XOK/@@download/ENCFF912XOK.fastq.gz Illumina HiSeq 4000 /files/ENCFF144AGB/ released experiment not submitted to GEO ENCFF933JZR fastq reads ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 1 101 paired-ended 2 ENCFF912XOK 2327752418 Michael Snyder, Stanford 8aed30c6d34aad1b276427b372d5e884 https://www.encodeproject.org/files/ENCFF933JZR/@@download/ENCFF933JZR.fastq.gz Illumina HiSeq 4000 /files/ENCFF699DOM/ released experiment not submitted to GEO ENCFF239KLD fastq reads ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 1 101 paired-ended 2 ENCFF303QKQ 2900985285 Michael Snyder, Stanford ce6a716e06848f7c397dd40a1aa43660 https://www.encodeproject.org/files/ENCFF239KLD/@@download/ENCFF239KLD.fastq.gz Illumina HiSeq 4000 /files/ENCFF066XSO/ released experiment not submitted to GEO ENCFF046COB bam unfiltered alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF239KLD, ENCFF303QKQ, ENCFF643CGH 5008591298 ENCODE Processing Pipeline 8c47b9fddc1e1bd0227fb2c186f9d3a6 https://www.encodeproject.org/files/ENCFF046COB/@@download/ENCFF046COB.bam GRCh38 released experiment not submitted to GEO ENCFF289GWS bam unfiltered alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF239KLD, ENCFF303QKQ, ENCFF807MUK 5007380493 ENCODE Processing Pipeline 915dd7c7012ab13d74209e5f7ce5badb https://www.encodeproject.org/files/ENCFF289GWS/@@download/ENCFF289GWS.bam hg19 released experiment not submitted to GEO ENCFF924UWH bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF239KLD, ENCFF303QKQ, ENCFF807MUK 3832658189 ENCODE Processing Pipeline 4680eedb46a71f31b4254e0f594c3401 https://www.encodeproject.org/files/ENCFF924UWH/@@download/ENCFF924UWH.bam hg19 released experiment not submitted to GEO ENCFF850DYP bam unfiltered alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF807MUK, ENCFF912XOK, ENCFF933JZR 4192805394 ENCODE Processing Pipeline cc61c681a961d7c9a4a30c11c92b3e48 https://www.encodeproject.org/files/ENCFF850DYP/@@download/ENCFF850DYP.bam hg19 released experiment not submitted to GEO ENCFF595DES bam unfiltered alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF643CGH, ENCFF912XOK, ENCFF933JZR 4194252294 ENCODE Processing Pipeline d4b6bfa1a48c8e7392988a0edcceddd2 https://www.encodeproject.org/files/ENCFF595DES/@@download/ENCFF595DES.bam GRCh38 released experiment not submitted to GEO ENCFF831DYI bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF643CGH, ENCFF912XOK, ENCFF933JZR 3300173137 ENCODE Processing Pipeline 9c8107707e46d0f73bb85be0f3428986 https://www.encodeproject.org/files/ENCFF831DYI/@@download/ENCFF831DYI.bam GRCh38 released experiment not submitted to GEO ENCFF666SAQ bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF807MUK, ENCFF912XOK, ENCFF933JZR 3298083030 ENCODE Processing Pipeline 5aa4aa055f5ad97ec74c6888879a2f63 https://www.encodeproject.org/files/ENCFF666SAQ/@@download/ENCFF666SAQ.bam hg19 released experiment not submitted to GEO ENCFF666TEP bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF239KLD, ENCFF303QKQ, ENCFF643CGH 3834210389 ENCODE Processing Pipeline 4cb6c30ad2aeb62fb187f38561f15588 https://www.encodeproject.org/files/ENCFF666TEP/@@download/ENCFF666TEP.bam GRCh38 released experiment not submitted to GEO ENCFF319VDT bigWig signal p-value ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF758CRV, ENCFF831DYI 1115943638 ENCODE Processing Pipeline d552b5c8d1beac8c4baad71bf6c6579d https://www.encodeproject.org/files/ENCFF319VDT/@@download/ENCFF319VDT.bigWig GRCh38 released experiment not submitted to GEO ENCFF052OTK bigWig signal p-value ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF666TEP, ENCFF708QBA 1237102279 ENCODE Processing Pipeline ff0996ddc1e69ab41bedd75033e92006 https://www.encodeproject.org/files/ENCFF052OTK/@@download/ENCFF052OTK.bigWig GRCh38 released experiment not submitted to GEO ENCFF234NKB bigWig signal p-value ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF666TEP, ENCFF708QBA, ENCFF758CRV, ENCFF831DYI 2002499976 ENCODE Processing Pipeline 431407b1eef62d283c5a6da1677f3963 https://www.encodeproject.org/files/ENCFF234NKB/@@download/ENCFF234NKB.bigWig GRCh38 released experiment not submitted to GEO ENCFF881FBQ bigWig fold change over control ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF758CRV, ENCFF831DYI 1102358898 ENCODE Processing Pipeline 02bc5f79731e64ee446a01d31b7149ff https://www.encodeproject.org/files/ENCFF881FBQ/@@download/ENCFF881FBQ.bigWig GRCh38 released experiment not submitted to GEO ENCFF948VZR bigWig fold change over control ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF666TEP, ENCFF708QBA 1242643182 ENCODE Processing Pipeline 5f51c6ce296a0ff79a7a37b8382bb7ad https://www.encodeproject.org/files/ENCFF948VZR/@@download/ENCFF948VZR.bigWig GRCh38 released experiment not submitted to GEO ENCFF663GIY bigWig fold change over control ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF666TEP, ENCFF708QBA, ENCFF758CRV, ENCFF831DYI 2200391794 ENCODE Processing Pipeline aede14abe3d9764c867f166a4602eb33 https://www.encodeproject.org/files/ENCFF663GIY/@@download/ENCFF663GIY.bigWig GRCh38 released experiment not submitted to GEO ENCFF308HRH bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF758CRV, ENCFF831DYI 6090106 ENCODE Processing Pipeline 28446e586cd63d355ff49b295f5a798e https://www.encodeproject.org/files/ENCFF308HRH/@@download/ENCFF308HRH.bed.gz GRCh38 released experiment not submitted to GEO ENCFF141XWJ bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF666TEP, ENCFF708QBA 6485688 ENCODE Processing Pipeline 2c1e319f04f876c16053bcd468994eb5 https://www.encodeproject.org/files/ENCFF141XWJ/@@download/ENCFF141XWJ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF913TNP bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF666TEP, ENCFF708QBA, ENCFF758CRV, ENCFF831DYI 6893646 ENCODE Processing Pipeline 935ee651775bdb0bded5fc5c31c0f71d https://www.encodeproject.org/files/ENCFF913TNP/@@download/ENCFF913TNP.bed.gz GRCh38 released experiment not submitted to GEO ENCFF996HKZ bigBed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF308HRH 11814886 ENCODE Processing Pipeline 98a1a8cc321becc9750b66068d06084a https://www.encodeproject.org/files/ENCFF996HKZ/@@download/ENCFF996HKZ.bigBed GRCh38 released experiment not submitted to GEO ENCFF695PPX bigBed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF141XWJ 11781862 ENCODE Processing Pipeline e81f50f98414e2d5faabe3f1fc5afe8f https://www.encodeproject.org/files/ENCFF695PPX/@@download/ENCFF695PPX.bigBed GRCh38 released experiment not submitted to GEO ENCFF461FJI bigBed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF913TNP 11653830 ENCODE Processing Pipeline 89ac0b8fb0c6e23f7eb3a927eccc06fa https://www.encodeproject.org/files/ENCFF461FJI/@@download/ENCFF461FJI.bigBed GRCh38 released experiment not submitted to GEO ENCFF591QYQ bed narrowPeak conservative idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF141XWJ, ENCFF308HRH, ENCFF419RSJ, ENCFF913TNP 1166639 ENCODE Processing Pipeline 4b3f866fcc8c670abbacfdbf17c171bf https://www.encodeproject.org/files/ENCFF591QYQ/@@download/ENCFF591QYQ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF694LOW bigBed narrowPeak conservative idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF591QYQ 2329183 ENCODE Processing Pipeline 15ba22d31e7217c77e3e820b01cd9ab2 https://www.encodeproject.org/files/ENCFF694LOW/@@download/ENCFF694LOW.bigBed GRCh38 released experiment not submitted to GEO ENCFF236RJT bed narrowPeak optimal idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF141XWJ, ENCFF308HRH, ENCFF419RSJ, ENCFF913TNP 1176060 ENCODE Processing Pipeline 2c551612f5d0eaf860565fdd7f6d92e0 https://www.encodeproject.org/files/ENCFF236RJT/@@download/ENCFF236RJT.bed.gz GRCh38 released experiment not submitted to GEO ENCFF943PNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF236RJT 2350061 ENCODE Processing Pipeline 9d3a9f126c1ab27e1c148d9bf3062da0 https://www.encodeproject.org/files/ENCFF943PNJ/@@download/ENCFF943PNJ.bigBed GRCh38 released experiment not submitted to GEO ENCFF461CTA bigWig signal p-value ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF006FDF, ENCFF666SAQ 1235516405 ENCODE Processing Pipeline 749928b597c12596f56b69bac06f88ce https://www.encodeproject.org/files/ENCFF461CTA/@@download/ENCFF461CTA.bigWig hg19 released experiment not submitted to GEO ENCFF966FCX bigWig signal p-value ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF006FDF, ENCFF575WLE, ENCFF666SAQ, ENCFF924UWH 2048897631 ENCODE Processing Pipeline 41d501552513eef72b2270707be275a2 https://www.encodeproject.org/files/ENCFF966FCX/@@download/ENCFF966FCX.bigWig hg19 released experiment not submitted to GEO ENCFF263ZPR bigBed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF379YTS 11809606 ENCODE Processing Pipeline a44bd76aa9972439db31e9f790182222 https://www.encodeproject.org/files/ENCFF263ZPR/@@download/ENCFF263ZPR.bigBed hg19 released experiment not submitted to GEO ENCFF293JXY bigWig fold change over control ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF006FDF, ENCFF575WLE, ENCFF666SAQ, ENCFF924UWH 2196472125 ENCODE Processing Pipeline 2601b9f7e978e180401c03dc103dbc68 https://www.encodeproject.org/files/ENCFF293JXY/@@download/ENCFF293JXY.bigWig hg19 released experiment not submitted to GEO ENCFF552TWC bed narrowPeak conservative idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF001TDO, ENCFF379YTS, ENCFF673WMU, ENCFF774PLL 1168864 ENCODE Processing Pipeline 9831eccd66f9d2d4c430f0661c2bdaf7 https://www.encodeproject.org/files/ENCFF552TWC/@@download/ENCFF552TWC.bed.gz hg19 released experiment not submitted to GEO ENCFF301HMF bigWig signal p-value ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF575WLE, ENCFF924UWH 1192057179 ENCODE Processing Pipeline 1963dbb2e871a9c2250e690dd7c9433b https://www.encodeproject.org/files/ENCFF301HMF/@@download/ENCFF301HMF.bigWig hg19 released experiment not submitted to GEO ENCFF178PYK bigBed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF774PLL 11688252 ENCODE Processing Pipeline e0fd5e1ac2d4dfd283fde58818469a6d https://www.encodeproject.org/files/ENCFF178PYK/@@download/ENCFF178PYK.bigBed hg19 released experiment not submitted to GEO ENCFF618VWI bigBed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF673WMU 11683864 ENCODE Processing Pipeline aac52a820624e8ae5e6b34e21d57fed3 https://www.encodeproject.org/files/ENCFF618VWI/@@download/ENCFF618VWI.bigBed hg19 released experiment not submitted to GEO ENCFF282LQP bigBed narrowPeak conservative idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF552TWC 2328355 ENCODE Processing Pipeline 3ddd45b309ee893c2f4d5a15f0525da4 https://www.encodeproject.org/files/ENCFF282LQP/@@download/ENCFF282LQP.bigBed hg19 released experiment not submitted to GEO ENCFF673WMU bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF006FDF, ENCFF575WLE, ENCFF666SAQ, ENCFF924UWH 6926616 ENCODE Processing Pipeline e27fcd8b93d1886c24207e916756b3d9 https://www.encodeproject.org/files/ENCFF673WMU/@@download/ENCFF673WMU.bed.gz hg19 released experiment not submitted to GEO ENCFF459YEI bed narrowPeak optimal idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF001TDO, ENCFF379YTS, ENCFF673WMU, ENCFF774PLL 1223933 ENCODE Processing Pipeline f817005605e7a1474a2e57fdfc3582b4 https://www.encodeproject.org/files/ENCFF459YEI/@@download/ENCFF459YEI.bed.gz hg19 released experiment not submitted to GEO ENCFF117GCX bigWig fold change over control ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF006FDF, ENCFF666SAQ 1099281685 ENCODE Processing Pipeline 90c099470a0fe6de4d05689042c0dec0 https://www.encodeproject.org/files/ENCFF117GCX/@@download/ENCFF117GCX.bigWig hg19 released experiment not submitted to GEO ENCFF545CWI bigWig fold change over control ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF575WLE, ENCFF924UWH 1241494667 ENCODE Processing Pipeline 5e3a7ada6e462e74cd5185bdc2fb6606 https://www.encodeproject.org/files/ENCFF545CWI/@@download/ENCFF545CWI.bigWig hg19 released experiment not submitted to GEO ENCFF379YTS bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF006FDF, ENCFF666SAQ 6094016 ENCODE Processing Pipeline 93a10bf39290950d81f25a84e4a14d41 https://www.encodeproject.org/files/ENCFF379YTS/@@download/ENCFF379YTS.bed.gz hg19 released experiment not submitted to GEO ENCFF774PLL bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF575WLE, ENCFF924UWH 6422575 ENCODE Processing Pipeline 6e1f6dd270aa7c4968e267c53a1eee3a https://www.encodeproject.org/files/ENCFF774PLL/@@download/ENCFF774PLL.bed.gz hg19 released experiment not submitted to GEO ENCFF247ZGN bigBed narrowPeak optimal idr thresholded peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF459YEI 2420433 ENCODE Processing Pipeline daba6ca0109d361e60d5bee5155e4159 https://www.encodeproject.org/files/ENCFF247ZGN/@@download/ENCFF247ZGN.bigBed hg19 released experiment not submitted to GEO ENCFF258VLM fastq reads ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF836VHY 1912767543 Richard Myers, HAIB ae7e9e0b9805e47917a371066794e2e3 SRA:SRR6212836 https://www.encodeproject.org/files/ENCFF258VLM/@@download/ENCFF258VLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF465LHG/ released antibody characterized with exemption missing control alignments ENCFF836VHY fastq reads ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF258VLM 1996304832 Richard Myers, HAIB ac94c90a2e0b1405246412597486dac3 SRA:SRR6212836 https://www.encodeproject.org/files/ENCFF836VHY/@@download/ENCFF836VHY.fastq.gz Illumina HiSeq 2000 /files/ENCFF631QEA/ released antibody characterized with exemption missing control alignments ENCFF970XTZ bam unfiltered alignments ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258VLM, ENCFF807MUK, ENCFF836VHY 4728763298 ENCODE Processing Pipeline 47977a7b1ae89e80602dbd6256d21ddd https://www.encodeproject.org/files/ENCFF970XTZ/@@download/ENCFF970XTZ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF972MFX bam unfiltered alignments ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258VLM, ENCFF643CGH, ENCFF836VHY 4751020591 ENCODE Processing Pipeline 6f4bf103386224d5702648f92e36d97d https://www.encodeproject.org/files/ENCFF972MFX/@@download/ENCFF972MFX.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF723ZTU bam alignments ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258VLM, ENCFF807MUK, ENCFF836VHY 3216889576 ENCODE Processing Pipeline 44a4acad7b5f137df99cd03773efba85 https://www.encodeproject.org/files/ENCFF723ZTU/@@download/ENCFF723ZTU.bam hg19 released antibody characterized with exemption missing control alignments ENCFF369OGH bam alignments ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258VLM, ENCFF643CGH, ENCFF836VHY 3220434073 ENCODE Processing Pipeline 3501de9ccaaceda0f9e5b4ea1026e879 https://www.encodeproject.org/files/ENCFF369OGH/@@download/ENCFF369OGH.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF614KES bigWig fold change over control ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF369OGH 1188373283 ENCODE Processing Pipeline efab9112d9c87418fa784ee3e905d8f1 https://www.encodeproject.org/files/ENCFF614KES/@@download/ENCFF614KES.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF098TMR bed narrowPeak peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF369OGH 5114875 ENCODE Processing Pipeline a1faaafcdb7004dbd528d61358835d6b https://www.encodeproject.org/files/ENCFF098TMR/@@download/ENCFF098TMR.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF308SPC bigWig signal p-value ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF369OGH 1443151853 ENCODE Processing Pipeline 8d88e0efa457badf218bb12d784751db https://www.encodeproject.org/files/ENCFF308SPC/@@download/ENCFF308SPC.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF286TEY bigBed narrowPeak peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF098TMR 11939820 ENCODE Processing Pipeline febc635a458a0e820bdc85e12306f83d https://www.encodeproject.org/files/ENCFF286TEY/@@download/ENCFF286TEY.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF191VCL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF098TMR, ENCFF419RSJ 714 ENCODE Processing Pipeline e187113ce7f293238dae93378bd4d938 https://www.encodeproject.org/files/ENCFF191VCL/@@download/ENCFF191VCL.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF722LSW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF191VCL 49192 ENCODE Processing Pipeline d237d2349d77bdfa0eab6d6c5965bffc https://www.encodeproject.org/files/ENCFF722LSW/@@download/ENCFF722LSW.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF027CLO bigWig fold change over control ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF723ZTU 1198108839 ENCODE Processing Pipeline c17aea3256533405fb597b8d459b587c https://www.encodeproject.org/files/ENCFF027CLO/@@download/ENCFF027CLO.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF839HSY bigWig signal p-value ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF723ZTU 1282052834 ENCODE Processing Pipeline 4622fa948b76de7cebcfd33b8597c383 https://www.encodeproject.org/files/ENCFF839HSY/@@download/ENCFF839HSY.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF434WMQ bigBed narrowPeak peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF965ZSK 11883957 ENCODE Processing Pipeline 4a29db91cf190b6c04b6d0fc1a22480d https://www.encodeproject.org/files/ENCFF434WMQ/@@download/ENCFF434WMQ.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF965ZSK bed narrowPeak peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF723ZTU 5086733 ENCODE Processing Pipeline 2c6ed487927383df49e0eafced44efb0 https://www.encodeproject.org/files/ENCFF965ZSK/@@download/ENCFF965ZSK.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF105KMS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF570FPH 16166 ENCODE Processing Pipeline ee52a837211177015a5a6f8793263b25 https://www.encodeproject.org/files/ENCFF105KMS/@@download/ENCFF105KMS.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF570FPH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF965ZSK 834 ENCODE Processing Pipeline 28abb996397817cb76fa72e7a3becaae https://www.encodeproject.org/files/ENCFF570FPH/@@download/ENCFF570FPH.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF862SVG bam unfiltered alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFS, ENCFF807MUK 1313501295 ENCODE Processing Pipeline 29b3850bb56c3cdaa3ab6d436dc4ce2d https://www.encodeproject.org/files/ENCFF862SVG/@@download/ENCFF862SVG.bam hg19 released low read depth ENCFF750GXR bam unfiltered alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFT, ENCFF807MUK 1768880450 ENCODE Processing Pipeline a29c338224b46e2c90e8f93cbf422827 https://www.encodeproject.org/files/ENCFF750GXR/@@download/ENCFF750GXR.bam hg19 released low read depth ENCFF899VCS bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFS, ENCFF807MUK 984850386 ENCODE Processing Pipeline 73cfaae47e2222015917d2ebb769e83c https://www.encodeproject.org/files/ENCFF899VCS/@@download/ENCFF899VCS.bam hg19 released low read depth ENCFF065DOQ bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFT, ENCFF807MUK 1309733892 ENCODE Processing Pipeline 8592c0e7c9f1087a46d238dacff4942a https://www.encodeproject.org/files/ENCFF065DOQ/@@download/ENCFF065DOQ.bam hg19 released low read depth ENCFF002BFS fastq reads ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1214732073 Richard Myers, HAIB d89727d25925869bfb4043a4ecfaf86a SRA:SRR5338634 https://www.encodeproject.org/files/ENCFF002BFS/@@download/ENCFF002BFS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released low read depth ENCFF002BFT fastq reads ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1637372619 Richard Myers, HAIB 87a727b35f052791014f38a1566f93ce SRA:SRR5338633 https://www.encodeproject.org/files/ENCFF002BFT/@@download/ENCFF002BFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGB/ released low read depth ENCFF391NMB bigWig signal p-value ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF899VCS 608745703 ENCODE Processing Pipeline c725a61d310243ebeaaf1b2adbaee961 https://www.encodeproject.org/files/ENCFF391NMB/@@download/ENCFF391NMB.bigWig hg19 released low read depth ENCFF290CZK bigWig fold change over control ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF899VCS 418346588 ENCODE Processing Pipeline cb67fb1aa6a94dc13f8e09b9951ce7cc https://www.encodeproject.org/files/ENCFF290CZK/@@download/ENCFF290CZK.bigWig hg19 released low read depth ENCFF870SDL bigWig signal p-value ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF065DOQ, ENCFF092ACZ, ENCFF899VCS 1083769087 ENCODE Processing Pipeline da8c1cc7593a485e22f46dfcaf4bffbb https://www.encodeproject.org/files/ENCFF870SDL/@@download/ENCFF870SDL.bigWig hg19 released low read depth ENCFF580OUE bigWig fold change over control ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF065DOQ, ENCFF092ACZ, ENCFF899VCS 972316305 ENCODE Processing Pipeline 7adc7f21cd6f6101ac3a28914208febb https://www.encodeproject.org/files/ENCFF580OUE/@@download/ENCFF580OUE.bigWig hg19 released low read depth ENCFF032HCI bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF899VCS 5573738 ENCODE Processing Pipeline d76d00eebebc49f8761c93cad455787a https://www.encodeproject.org/files/ENCFF032HCI/@@download/ENCFF032HCI.bed.gz hg19 released low read depth ENCFF139HGF bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF065DOQ, ENCFF092ACZ 5524228 ENCODE Processing Pipeline 2aae8c1ccd397c34a1d4ed546f80f4b6 https://www.encodeproject.org/files/ENCFF139HGF/@@download/ENCFF139HGF.bed.gz hg19 released low read depth ENCFF027BJC bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF065DOQ, ENCFF092ACZ, ENCFF899VCS 6662908 ENCODE Processing Pipeline 8c224e9c536f38f96f36cb2caa2b4f25 https://www.encodeproject.org/files/ENCFF027BJC/@@download/ENCFF027BJC.bed.gz hg19 released low read depth ENCFF617OIZ bigBed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF139HGF 11159243 ENCODE Processing Pipeline aac6af610ac0b9391a0dc4dc60952b1c https://www.encodeproject.org/files/ENCFF617OIZ/@@download/ENCFF617OIZ.bigBed hg19 released low read depth ENCFF384RFK bigBed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF032HCI 13138378 ENCODE Processing Pipeline 893fa0a224f9fd2117c3dee9f3178e1c https://www.encodeproject.org/files/ENCFF384RFK/@@download/ENCFF384RFK.bigBed hg19 released low read depth ENCFF260SQQ bigBed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF027BJC 13337019 ENCODE Processing Pipeline 93d5f9ecde889b6bab92d62ccc9a9680 https://www.encodeproject.org/files/ENCFF260SQQ/@@download/ENCFF260SQQ.bigBed hg19 released low read depth ENCFF063ILV bed narrowPeak conservative idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF027BJC, ENCFF032HCI, ENCFF139HGF 112227 ENCODE Processing Pipeline 25c11cd099248baf012a383cfc47ae2d https://www.encodeproject.org/files/ENCFF063ILV/@@download/ENCFF063ILV.bed.gz hg19 released low read depth ENCFF968EAL bed narrowPeak optimal idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF027BJC, ENCFF032HCI, ENCFF139HGF 136479 ENCODE Processing Pipeline bba8e09d361ca0cf21a60e83afff4fcd https://www.encodeproject.org/files/ENCFF968EAL/@@download/ENCFF968EAL.bed.gz hg19 released low read depth ENCFF940JPY bigBed narrowPeak conservative idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF063ILV 262618 ENCODE Processing Pipeline 78259c9cd93f2d6907f93af709cfb903 https://www.encodeproject.org/files/ENCFF940JPY/@@download/ENCFF940JPY.bigBed hg19 released low read depth ENCFF686KSF bigBed narrowPeak optimal idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF968EAL 299702 ENCODE Processing Pipeline 88b5af348e10b0d70001cc733d8673df https://www.encodeproject.org/files/ENCFF686KSF/@@download/ENCFF686KSF.bigBed hg19 released low read depth ENCFF421GUB bigWig signal p-value ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF065DOQ, ENCFF092ACZ 523234890 ENCODE Processing Pipeline 681529f2e4e13651aa048ae224282b26 https://www.encodeproject.org/files/ENCFF421GUB/@@download/ENCFF421GUB.bigWig hg19 released low read depth ENCFF433SGA bigWig fold change over control ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF065DOQ, ENCFF092ACZ 512391931 ENCODE Processing Pipeline adcbffb833140fa9b766172c509954c1 https://www.encodeproject.org/files/ENCFF433SGA/@@download/ENCFF433SGA.bigWig hg19 released low read depth ENCFF866DXQ bam unfiltered alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFT, ENCFF643CGH 1775290559 ENCODE Processing Pipeline a3ea240753398cbe69861070292c8c18 https://www.encodeproject.org/files/ENCFF866DXQ/@@download/ENCFF866DXQ.bam GRCh38 released low read depth ENCFF556EGU bam unfiltered alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFS, ENCFF643CGH 1315953002 ENCODE Processing Pipeline 136b500f938f8eeec0a1b8b7f9fa5a7b https://www.encodeproject.org/files/ENCFF556EGU/@@download/ENCFF556EGU.bam GRCh38 released low read depth ENCFF283ZIL bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFS, ENCFF643CGH 984473579 ENCODE Processing Pipeline 9ea454d2dafc210153040838ae40cb7d https://www.encodeproject.org/files/ENCFF283ZIL/@@download/ENCFF283ZIL.bam GRCh38 released low read depth ENCFF903JXA bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFT, ENCFF643CGH 1309458087 ENCODE Processing Pipeline 916e7f623e602ee0fcd41501175cf5f3 https://www.encodeproject.org/files/ENCFF903JXA/@@download/ENCFF903JXA.bam GRCh38 released low read depth ENCFF399SVX bigWig signal p-value ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF283ZIL, ENCFF709XAA 653317266 ENCODE Processing Pipeline b24ef626eb29a732d9bc7c3e77653b0f https://www.encodeproject.org/files/ENCFF399SVX/@@download/ENCFF399SVX.bigWig GRCh38 released low read depth ENCFF540MPS bigWig signal p-value ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF285EWB, ENCFF903JXA 522672374 ENCODE Processing Pipeline 86b9c8e495d97130fd84a45fab43d5cc https://www.encodeproject.org/files/ENCFF540MPS/@@download/ENCFF540MPS.bigWig GRCh38 released low read depth ENCFF318UDN bigWig signal p-value ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF283ZIL, ENCFF285EWB, ENCFF709XAA, ENCFF903JXA 1157951109 ENCODE Processing Pipeline f4ff06d8a3d921476a8a99006fdebbf2 https://www.encodeproject.org/files/ENCFF318UDN/@@download/ENCFF318UDN.bigWig GRCh38 released low read depth ENCFF254OXZ bigWig fold change over control ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF283ZIL, ENCFF709XAA 407588971 ENCODE Processing Pipeline 170df6fdc5a4c36df8027009b793e304 https://www.encodeproject.org/files/ENCFF254OXZ/@@download/ENCFF254OXZ.bigWig GRCh38 released low read depth ENCFF524XVE bigWig fold change over control ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF285EWB, ENCFF903JXA 518265468 ENCODE Processing Pipeline 2619a789c2428a93da6fb6c9c071dde7 https://www.encodeproject.org/files/ENCFF524XVE/@@download/ENCFF524XVE.bigWig GRCh38 released low read depth ENCFF623ZTZ bigWig fold change over control ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF283ZIL, ENCFF285EWB, ENCFF709XAA, ENCFF903JXA 1009070837 ENCODE Processing Pipeline f6a87fa76ee0509048fc18e460d03fa6 https://www.encodeproject.org/files/ENCFF623ZTZ/@@download/ENCFF623ZTZ.bigWig GRCh38 released low read depth ENCFF459XMM bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF283ZIL, ENCFF709XAA 5535441 ENCODE Processing Pipeline 9f36fa5536e07057a8bd55924ecf5b34 https://www.encodeproject.org/files/ENCFF459XMM/@@download/ENCFF459XMM.bed.gz GRCh38 released low read depth ENCFF373MAQ bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF285EWB, ENCFF903JXA 5517753 ENCODE Processing Pipeline c44fbb416faed138bc2700cb3ca57560 https://www.encodeproject.org/files/ENCFF373MAQ/@@download/ENCFF373MAQ.bed.gz GRCh38 released low read depth ENCFF113GGC bigBed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF459XMM 13125549 ENCODE Processing Pipeline e0bfcfe173f3adc8e07227809c02ed1e https://www.encodeproject.org/files/ENCFF113GGC/@@download/ENCFF113GGC.bigBed GRCh38 released low read depth ENCFF223LCM bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF283ZIL, ENCFF285EWB, ENCFF709XAA, ENCFF903JXA 6646058 ENCODE Processing Pipeline e286163625de797d410634fe70bc0aa8 https://www.encodeproject.org/files/ENCFF223LCM/@@download/ENCFF223LCM.bed.gz GRCh38 released low read depth ENCFF599ZGN bigBed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF373MAQ 11165660 ENCODE Processing Pipeline b27427d29707fe7fadf8d79f035f861f https://www.encodeproject.org/files/ENCFF599ZGN/@@download/ENCFF599ZGN.bigBed GRCh38 released low read depth ENCFF070XNC bigBed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF223LCM 13355967 ENCODE Processing Pipeline 5bed44453d1eec2c924d5ad6434ef535 https://www.encodeproject.org/files/ENCFF070XNC/@@download/ENCFF070XNC.bigBed GRCh38 released low read depth ENCFF790MVV bigBed narrowPeak conservative idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF213EHL 264801 ENCODE Processing Pipeline de3c950b92d97c7c7ea22774d86d905c https://www.encodeproject.org/files/ENCFF790MVV/@@download/ENCFF790MVV.bigBed GRCh38 released low read depth ENCFF213EHL bed narrowPeak conservative idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF223LCM, ENCFF373MAQ, ENCFF419RSJ, ENCFF459XMM 112827 ENCODE Processing Pipeline e870575eff4d1e6f09e3962b18bac47c https://www.encodeproject.org/files/ENCFF213EHL/@@download/ENCFF213EHL.bed.gz GRCh38 released low read depth ENCFF641AXD bed narrowPeak optimal idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF223LCM, ENCFF373MAQ, ENCFF419RSJ, ENCFF459XMM 137540 ENCODE Processing Pipeline 7e814721301eb261472ed85b8adbeed3 https://www.encodeproject.org/files/ENCFF641AXD/@@download/ENCFF641AXD.bed.gz GRCh38 released low read depth ENCFF059EJM bigBed narrowPeak optimal idr thresholded peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF641AXD 302787 ENCODE Processing Pipeline 957474ae04b9926869957b7a451f539e https://www.encodeproject.org/files/ENCFF059EJM/@@download/ENCFF059EJM.bigBed GRCh38 released low read depth ENCFF648RRL bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 6467947 ENCODE Processing Pipeline 4435ee4a7fe139f08413b2140a3f41ff https://www.encodeproject.org/files/ENCFF648RRL/@@download/ENCFF648RRL.bed.gz hg19 released ENCFF590SHC bigBed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF052CCG 13373127 ENCODE Processing Pipeline 47692ae8a8c2621155082881a0763410 https://www.encodeproject.org/files/ENCFF590SHC/@@download/ENCFF590SHC.bigBed hg19 released ENCFF373FBG bed narrowPeak conservative idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF052CCG, ENCFF259MRC, ENCFF648RRL 93386 ENCODE Processing Pipeline f156f095b30ddbc2c0683a2c0ba94dab https://www.encodeproject.org/files/ENCFF373FBG/@@download/ENCFF373FBG.bed.gz hg19 released ENCFF921WZB bigBed narrowPeak optimal idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF253FON 241966 ENCODE Processing Pipeline 0175b779f0e04fd38d120c28b2141c6b https://www.encodeproject.org/files/ENCFF921WZB/@@download/ENCFF921WZB.bigBed hg19 released ENCFF287QTL bigWig signal p-value ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 1101273582 ENCODE Processing Pipeline 4b3e475b9626129f0a3d764716224a84 https://www.encodeproject.org/files/ENCFF287QTL/@@download/ENCFF287QTL.bigWig hg19 released ENCFF052CCG bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP 6399337 ENCODE Processing Pipeline ea0184726994327edd2dadc7190bb8fe https://www.encodeproject.org/files/ENCFF052CCG/@@download/ENCFF052CCG.bed.gz hg19 released ENCFF259MRC bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 7007314 ENCODE Processing Pipeline 5951ae5c8afd1cd3a1d840f766badeea https://www.encodeproject.org/files/ENCFF259MRC/@@download/ENCFF259MRC.bed.gz hg19 released ENCFF476IRG bigBed narrowPeak conservative idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF373FBG 226477 ENCODE Processing Pipeline 8d87241b3e552dd5ba344496ce5451fe https://www.encodeproject.org/files/ENCFF476IRG/@@download/ENCFF476IRG.bigBed hg19 released ENCFF902DXX bigWig signal p-value ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 1213866888 ENCODE Processing Pipeline 2b538d984e676c2bd89353c47925eb1a https://www.encodeproject.org/files/ENCFF902DXX/@@download/ENCFF902DXX.bigWig hg19 released ENCFF263ERN bigBed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF648RRL 13248062 ENCODE Processing Pipeline 0e3a3c1358ead38d52b9a45c4d17a9f1 https://www.encodeproject.org/files/ENCFF263ERN/@@download/ENCFF263ERN.bigBed hg19 released ENCFF430QXM bigBed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF259MRC 13195074 ENCODE Processing Pipeline 6fb51601c3725689277a06df85209d76 https://www.encodeproject.org/files/ENCFF430QXM/@@download/ENCFF430QXM.bigBed hg19 released ENCFF496XVO bigWig fold change over control ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 780646225 ENCODE Processing Pipeline 11e0808a769fac069629bbb5eac46edf https://www.encodeproject.org/files/ENCFF496XVO/@@download/ENCFF496XVO.bigWig hg19 released ENCFF876HAD bigWig fold change over control ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 1225909219 ENCODE Processing Pipeline 97db925a5f1d8de460e044bbe4b3f646 https://www.encodeproject.org/files/ENCFF876HAD/@@download/ENCFF876HAD.bigWig hg19 released ENCFF253FON bed narrowPeak optimal idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF052CCG, ENCFF259MRC, ENCFF648RRL 104275 ENCODE Processing Pipeline 5fdeef786b8622e06a21d2c820b3da97 https://www.encodeproject.org/files/ENCFF253FON/@@download/ENCFF253FON.bed.gz hg19 released ENCFF979YNL bam unfiltered alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFO, ENCFF807MUK 1723058051 ENCODE Processing Pipeline 3755c2fa3654203195815237d5a0702d https://www.encodeproject.org/files/ENCFF979YNL/@@download/ENCFF979YNL.bam hg19 released ENCFF410CMA bam unfiltered alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFP, ENCFF807MUK 1748190476 ENCODE Processing Pipeline c6d98987bf17e0d30e3cd995c104e8e4 https://www.encodeproject.org/files/ENCFF410CMA/@@download/ENCFF410CMA.bam hg19 released ENCFF002BFO fastq reads ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1613808460 Richard Myers, HAIB 52bbe02cf59ba37f4d97ec59ec6d58bf SRA:SRR5331577 https://www.encodeproject.org/files/ENCFF002BFO/@@download/ENCFF002BFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVP/ released ENCFF002BFP fastq reads ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1629342273 Richard Myers, HAIB 76074bb4e8e631a86aa320611017543d SRA:SRR5331578 https://www.encodeproject.org/files/ENCFF002BFP/@@download/ENCFF002BFP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released ENCFF016MFU bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFO, ENCFF807MUK 1268017381 ENCODE Processing Pipeline 660cb5eac8d2c75e65d927c458ba0ab6 https://www.encodeproject.org/files/ENCFF016MFU/@@download/ENCFF016MFU.bam hg19 released ENCFF986OUP bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFP, ENCFF807MUK 1305616018 ENCODE Processing Pipeline 92955810e04dad791b7c0fb7631648e3 https://www.encodeproject.org/files/ENCFF986OUP/@@download/ENCFF986OUP.bam hg19 released ENCFF836CBV bigWig signal p-value ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP 1040416198 ENCODE Processing Pipeline fb4bcafa73e4ec67965091504d90e316 https://www.encodeproject.org/files/ENCFF836CBV/@@download/ENCFF836CBV.bigWig hg19 released ENCFF387DEW bigWig fold change over control ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP 769867199 ENCODE Processing Pipeline 5cdc7e3563bcac5eb505b741c79d3139 https://www.encodeproject.org/files/ENCFF387DEW/@@download/ENCFF387DEW.bigWig hg19 released ENCFF061DUL bam unfiltered alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFO, ENCFF643CGH 1726607237 ENCODE Processing Pipeline 39f59ac46bed67b46af25e848b3a76c9 https://www.encodeproject.org/files/ENCFF061DUL/@@download/ENCFF061DUL.bam GRCh38 released ENCFF061RFH bam unfiltered alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFP, ENCFF643CGH 1751658712 ENCODE Processing Pipeline 1035f4c32400b508cd611623af65beba https://www.encodeproject.org/files/ENCFF061RFH/@@download/ENCFF061RFH.bam GRCh38 released ENCFF261BXO bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFP, ENCFF643CGH 1305095200 ENCODE Processing Pipeline 38f96996071f609605ab06b63c7a2a0f https://www.encodeproject.org/files/ENCFF261BXO/@@download/ENCFF261BXO.bam GRCh38 released ENCFF035GBL bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFO, ENCFF643CGH 1267455228 ENCODE Processing Pipeline d20b8c035213987c7e77d9322e2f5b7a https://www.encodeproject.org/files/ENCFF035GBL/@@download/ENCFF035GBL.bam GRCh38 released ENCFF377BCO bigWig signal p-value ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF035GBL, ENCFF121DUE, ENCFF709XAA 1048400099 ENCODE Processing Pipeline efcefbe47563f8212dac4f358426f0b7 https://www.encodeproject.org/files/ENCFF377BCO/@@download/ENCFF377BCO.bigWig GRCh38 released ENCFF669JAP bigWig signal p-value ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF121DUE, ENCFF261BXO, ENCFF709XAA 1106697203 ENCODE Processing Pipeline 6bf07c236f29d6eb7a23f270800fada1 https://www.encodeproject.org/files/ENCFF669JAP/@@download/ENCFF669JAP.bigWig GRCh38 released ENCFF465PNK bigWig signal p-value ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF035GBL, ENCFF121DUE, ENCFF261BXO, ENCFF709XAA 1305950391 ENCODE Processing Pipeline 8457ed47cc1e865b028b1bc33b7c0f1c https://www.encodeproject.org/files/ENCFF465PNK/@@download/ENCFF465PNK.bigWig GRCh38 released ENCFF128OSD bigWig fold change over control ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF035GBL, ENCFF121DUE, ENCFF709XAA 784667665 ENCODE Processing Pipeline 63ad885b429bbea56fe522ddf1331a89 https://www.encodeproject.org/files/ENCFF128OSD/@@download/ENCFF128OSD.bigWig GRCh38 released ENCFF010XWS bigWig fold change over control ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF121DUE, ENCFF261BXO, ENCFF709XAA 825643500 ENCODE Processing Pipeline 9b160de48409c7da4e221bf1ef260004 https://www.encodeproject.org/files/ENCFF010XWS/@@download/ENCFF010XWS.bigWig GRCh38 released ENCFF891OWF bigWig fold change over control ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF035GBL, ENCFF121DUE, ENCFF261BXO, ENCFF709XAA 1220605707 ENCODE Processing Pipeline b2fff7fbcaaf4beaafb4fdbe8c3c54fa https://www.encodeproject.org/files/ENCFF891OWF/@@download/ENCFF891OWF.bigWig GRCh38 released ENCFF371IMA bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF035GBL, ENCFF121DUE, ENCFF709XAA 6372209 ENCODE Processing Pipeline 9731b9cdb0623a4de180b26b61ca4dc5 https://www.encodeproject.org/files/ENCFF371IMA/@@download/ENCFF371IMA.bed.gz GRCh38 released ENCFF938QIC bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF035GBL, ENCFF121DUE, ENCFF261BXO, ENCFF709XAA 6955462 ENCODE Processing Pipeline 34ff6da1005d65084f0a0455fe945330 https://www.encodeproject.org/files/ENCFF938QIC/@@download/ENCFF938QIC.bed.gz GRCh38 released ENCFF135BUM bigBed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086AMQ 13271949 ENCODE Processing Pipeline 19e5f8d20c7aa5ed8b08f936170f4fb1 https://www.encodeproject.org/files/ENCFF135BUM/@@download/ENCFF135BUM.bigBed GRCh38 released ENCFF086AMQ bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF121DUE, ENCFF261BXO, ENCFF709XAA 6468341 ENCODE Processing Pipeline 1d51a115dc7d2efa52004b7ef1f29901 https://www.encodeproject.org/files/ENCFF086AMQ/@@download/ENCFF086AMQ.bed.gz GRCh38 released ENCFF619KWZ bed narrowPeak conservative idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086AMQ, ENCFF371IMA, ENCFF419RSJ, ENCFF938QIC 93920 ENCODE Processing Pipeline 80c2419a8c439902fab5ff013c93e6c8 https://www.encodeproject.org/files/ENCFF619KWZ/@@download/ENCFF619KWZ.bed.gz GRCh38 released ENCFF634VKB bigBed narrowPeak conservative idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF619KWZ 229536 ENCODE Processing Pipeline aaa33d4267c4d46a3b5e1d6955bad0c6 https://www.encodeproject.org/files/ENCFF634VKB/@@download/ENCFF634VKB.bigBed GRCh38 released ENCFF500KOA bigBed narrowPeak optimal idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF388TYU 250265 ENCODE Processing Pipeline d9d226da9d2b8a15c0d08f46274b7646 https://www.encodeproject.org/files/ENCFF500KOA/@@download/ENCFF500KOA.bigBed GRCh38 released ENCFF486VYD bigBed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF371IMA 13395172 ENCODE Processing Pipeline d67d2396afaaa9daf6e84ff63ad8bec0 https://www.encodeproject.org/files/ENCFF486VYD/@@download/ENCFF486VYD.bigBed GRCh38 released ENCFF488EMC bigBed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF938QIC 13228534 ENCODE Processing Pipeline 3e460b032580c347f7cdc603865a5016 https://www.encodeproject.org/files/ENCFF488EMC/@@download/ENCFF488EMC.bigBed GRCh38 released ENCFF388TYU bed narrowPeak optimal idr thresholded peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086AMQ, ENCFF371IMA, ENCFF419RSJ, ENCFF938QIC 108938 ENCODE Processing Pipeline 97f1ac53cbf7b2049fdc18567c700d9c https://www.encodeproject.org/files/ENCFF388TYU/@@download/ENCFF388TYU.bed.gz GRCh38 released ENCFF002BFR fastq reads ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 1 50 single-ended 1453849505 Richard Myers, HAIB 8219972aa733b860009563baac3d08a4 SRA:SRR5331639 https://www.encodeproject.org/files/ENCFF002BFR/@@download/ENCFF002BFR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released borderline replicate concordance, low read depth ENCFF697WPB fastq reads ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 1 50 single-ended 1170310914 Richard Myers, HAIB 6f44633b484df3fb934a90e5addfedb3 SRA:SRR5331638 https://www.encodeproject.org/files/ENCFF697WPB/@@download/ENCFF697WPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF192IAC/ released borderline replicate concordance, low read depth ENCFF512IQR bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF697WPB, ENCFF807MUK 1312077047 ENCODE Processing Pipeline a454c2d9290037f99a530b5dbb5958c0 https://www.encodeproject.org/files/ENCFF512IQR/@@download/ENCFF512IQR.bam hg19 released borderline replicate concordance, low read depth ENCFF145KYA bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF807MUK 1576708037 ENCODE Processing Pipeline d64b3d7acc9559fe3cccf7d72d7ec73d https://www.encodeproject.org/files/ENCFF145KYA/@@download/ENCFF145KYA.bam hg19 released borderline replicate concordance, low read depth ENCFF958XTI bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF643CGH, ENCFF697WPB 1311284154 ENCODE Processing Pipeline b03f2290b9f771ba8b098b0c29150e8f https://www.encodeproject.org/files/ENCFF958XTI/@@download/ENCFF958XTI.bam GRCh38 released borderline replicate concordance, low read depth ENCFF633KZW bam unfiltered alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF643CGH 1576502799 ENCODE Processing Pipeline ac8ebbec2ceddf063b10b3aaf20489c2 https://www.encodeproject.org/files/ENCFF633KZW/@@download/ENCFF633KZW.bam GRCh38 released borderline replicate concordance, low read depth ENCFF598WGZ bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF697WPB, ENCFF807MUK 979001374 ENCODE Processing Pipeline 2377052fae2ee81455e9268d7b6d479b https://www.encodeproject.org/files/ENCFF598WGZ/@@download/ENCFF598WGZ.bam hg19 released borderline replicate concordance, low read depth ENCFF963FTZ bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF643CGH, ENCFF697WPB 986701596 ENCODE Processing Pipeline fdb61e0b08fc7be114df7fbcf24bb8bd https://www.encodeproject.org/files/ENCFF963FTZ/@@download/ENCFF963FTZ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF179SRP bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF643CGH 1158305361 ENCODE Processing Pipeline 51bd213bf48846b000540896829e1a06 https://www.encodeproject.org/files/ENCFF179SRP/@@download/ENCFF179SRP.bam GRCh38 released borderline replicate concordance, low read depth ENCFF199MDR bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF807MUK 1150353182 ENCODE Processing Pipeline ad9be9055a9f79a7daae6d0491c6123a https://www.encodeproject.org/files/ENCFF199MDR/@@download/ENCFF199MDR.bam hg19 released borderline replicate concordance, low read depth ENCFF717ZUE bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 767641642 ENCODE Processing Pipeline 936700e8f2b0ebd19006d1b8df0ef0c7 https://www.encodeproject.org/files/ENCFF717ZUE/@@download/ENCFF717ZUE.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF386EXB bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 507072030 ENCODE Processing Pipeline 2a733472e15c02c5362db7841a0399b7 https://www.encodeproject.org/files/ENCFF386EXB/@@download/ENCFF386EXB.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF717HVY bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF 780223217 ENCODE Processing Pipeline 2bec9e378b248c02d17e7235854dac8b https://www.encodeproject.org/files/ENCFF717HVY/@@download/ENCFF717HVY.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF359EOF bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 980179428 ENCODE Processing Pipeline c314654ade1885316eef028391df28d2 https://www.encodeproject.org/files/ENCFF359EOF/@@download/ENCFF359EOF.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF789EFZ bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF 531781718 ENCODE Processing Pipeline 894b6dbc48dfeac7bb15dd1dfd3e269b https://www.encodeproject.org/files/ENCFF789EFZ/@@download/ENCFF789EFZ.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF436YJO bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 827580109 ENCODE Processing Pipeline 66d2b2e5f7237ad27c998b6d4d4b7a42 https://www.encodeproject.org/files/ENCFF436YJO/@@download/ENCFF436YJO.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF078SOE bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF 5208687 ENCODE Processing Pipeline 2293c9c9d7f2bcd77c62ef6d5d7f285b https://www.encodeproject.org/files/ENCFF078SOE/@@download/ENCFF078SOE.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF043AHC bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 5583086 ENCODE Processing Pipeline ab1002a4e7ee46746e3a73b51162598c https://www.encodeproject.org/files/ENCFF043AHC/@@download/ENCFF043AHC.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF017GHB bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF043AHC 13427174 ENCODE Processing Pipeline bd7303dd724114c57147146d89c4ef99 https://www.encodeproject.org/files/ENCFF017GHB/@@download/ENCFF017GHB.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF957SDB bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF078SOE 11268471 ENCODE Processing Pipeline a8e98b68226f38232087fb56cc1e2473 https://www.encodeproject.org/files/ENCFF957SDB/@@download/ENCFF957SDB.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF938YLS bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF179SRP, ENCFF423BBH, ENCFF747NOF, ENCFF963FTZ 6275342 ENCODE Processing Pipeline 09cfe5e49e9aaf2ca574d52fdd0e76a9 https://www.encodeproject.org/files/ENCFF938YLS/@@download/ENCFF938YLS.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF334VIL bigBed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF871LZM 277929 ENCODE Processing Pipeline 5563c269fcc4d3eb08893f461e7ab32e https://www.encodeproject.org/files/ENCFF334VIL/@@download/ENCFF334VIL.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF887EVV bed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF043AHC, ENCFF078SOE, ENCFF419RSJ, ENCFF938YLS 99422 ENCODE Processing Pipeline 91f350719c5546757d79d3d69ca54949 https://www.encodeproject.org/files/ENCFF887EVV/@@download/ENCFF887EVV.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF309HQG bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF938YLS 13528253 ENCODE Processing Pipeline 2431cc53bfb6051194b613bef8fd6ffd https://www.encodeproject.org/files/ENCFF309HQG/@@download/ENCFF309HQG.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF781QRT bigBed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF887EVV 242062 ENCODE Processing Pipeline d0eb598d493d2576395f44b894e45971 https://www.encodeproject.org/files/ENCFF781QRT/@@download/ENCFF781QRT.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF871LZM bed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF043AHC, ENCFF078SOE, ENCFF419RSJ, ENCFF938YLS 122416 ENCODE Processing Pipeline 18c5363d23846665ae270bf20fd17ce2 https://www.encodeproject.org/files/ENCFF871LZM/@@download/ENCFF871LZM.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF871XDX bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 707682897 ENCODE Processing Pipeline 99434c281ecf0f108b4de4f7a74beb65 https://www.encodeproject.org/files/ENCFF871XDX/@@download/ENCFF871XDX.bigWig hg19 released borderline replicate concordance, low read depth ENCFF107OLX bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF199MDR, ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 773932450 ENCODE Processing Pipeline 757497ade4f01586a0bc875ccce5464e https://www.encodeproject.org/files/ENCFF107OLX/@@download/ENCFF107OLX.bigWig hg19 released borderline replicate concordance, low read depth ENCFF294NTH bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 535915572 ENCODE Processing Pipeline e9514ae20d620e5c8b845b892efb2e4e https://www.encodeproject.org/files/ENCFF294NTH/@@download/ENCFF294NTH.bigWig hg19 released borderline replicate concordance, low read depth ENCFF362SVS bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF199MDR, ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 845961814 ENCODE Processing Pipeline 02adb1103b54a4e3160014ff7bf1d18b https://www.encodeproject.org/files/ENCFF362SVS/@@download/ENCFF362SVS.bigWig hg19 released borderline replicate concordance, low read depth ENCFF496ZST bigWig signal p-value ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 666385717 ENCODE Processing Pipeline fc71eb364df28e3d2b7da3055b25d29b https://www.encodeproject.org/files/ENCFF496ZST/@@download/ENCFF496ZST.bigWig hg19 released borderline replicate concordance, low read depth ENCFF168RYI bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 5497898 ENCODE Processing Pipeline 63382d019e0fde4f49a5993034e60f45 https://www.encodeproject.org/files/ENCFF168RYI/@@download/ENCFF168RYI.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF634MHG bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF025MTA 13428389 ENCODE Processing Pipeline 5b713dc709f1bea21f0d8fee90c34a2a https://www.encodeproject.org/files/ENCFF634MHG/@@download/ENCFF634MHG.bigBed hg19 released borderline replicate concordance, low read depth ENCFF364KPB bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF500LLP 13535243 ENCODE Processing Pipeline 6b2ba48fecbb02f1ca12f9e192ae6852 https://www.encodeproject.org/files/ENCFF364KPB/@@download/ENCFF364KPB.bigBed hg19 released borderline replicate concordance, low read depth ENCFF922UWO bed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF025MTA, ENCFF168RYI, ENCFF500LLP 99146 ENCODE Processing Pipeline 0c72aef876eaf319f80ae883f65aff84 https://www.encodeproject.org/files/ENCFF922UWO/@@download/ENCFF922UWO.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF378HXE bigWig fold change over control ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 499787136 ENCODE Processing Pipeline bdf72bea22d95bd246c5c524c82faee3 https://www.encodeproject.org/files/ENCFF378HXE/@@download/ENCFF378HXE.bigWig hg19 released borderline replicate concordance, low read depth ENCFF733CHK bigBed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF168RYI 11325434 ENCODE Processing Pipeline fd40c55fe77ca7000322916fd94856c7 https://www.encodeproject.org/files/ENCFF733CHK/@@download/ENCFF733CHK.bigBed hg19 released borderline replicate concordance, low read depth ENCFF468SZX bigBed narrowPeak conservative idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF922UWO 241271 ENCODE Processing Pipeline 468436635e672e00ff378b2d8cffb1d6 https://www.encodeproject.org/files/ENCFF468SZX/@@download/ENCFF468SZX.bigBed hg19 released borderline replicate concordance, low read depth ENCFF025MTA bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 5657686 ENCODE Processing Pipeline 1332477ed89d41eeebcef99f85c146c5 https://www.encodeproject.org/files/ENCFF025MTA/@@download/ENCFF025MTA.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF500LLP bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF199MDR, ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 6285494 ENCODE Processing Pipeline 3f89439fe4e35543d97ef489e957a713 https://www.encodeproject.org/files/ENCFF500LLP/@@download/ENCFF500LLP.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF374HJR bed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF025MTA, ENCFF168RYI, ENCFF500LLP 117764 ENCODE Processing Pipeline aa3bef7e4e1504bc5d0fe6d1cb3b61b9 https://www.encodeproject.org/files/ENCFF374HJR/@@download/ENCFF374HJR.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF442QLP bigBed narrowPeak optimal idr thresholded peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1, 2 ENCFF374HJR 270892 ENCODE Processing Pipeline cdd650fbb4d400040ff172a6eeb31421 https://www.encodeproject.org/files/ENCFF442QLP/@@download/ENCFF442QLP.bigBed hg19 released borderline replicate concordance, low read depth ENCFF991UEV fastq reads ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF547KHV 2759942306 Michael Snyder, Stanford c251bd968187b5e5297d1e87a2f12583 SRA:SRR6213984 https://www.encodeproject.org/files/ENCFF991UEV/@@download/ENCFF991UEV.fastq.gz Illumina HiSeq 4000 /files/ENCFF913JQM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF547KHV fastq reads ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF991UEV 2897638273 Michael Snyder, Stanford 4e88726a50223c6b29742c41aa3e1a03 SRA:SRR6213984 https://www.encodeproject.org/files/ENCFF547KHV/@@download/ENCFF547KHV.fastq.gz Illumina HiSeq 4000 /files/ENCFF024VTZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF907VQA bam unfiltered alignments ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF547KHV, ENCFF643CGH, ENCFF991UEV 5319595969 ENCODE Processing Pipeline a8fdd345e28cc069e673fe8163239b47 https://www.encodeproject.org/files/ENCFF907VQA/@@download/ENCFF907VQA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF688RVZ bam unfiltered alignments ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF547KHV, ENCFF807MUK, ENCFF991UEV 5316366175 ENCODE Processing Pipeline 2b180f85a6654a5bc0c08131c5d5c67d https://www.encodeproject.org/files/ENCFF688RVZ/@@download/ENCFF688RVZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF414EUV bam alignments ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF547KHV, ENCFF643CGH, ENCFF991UEV 3542134488 ENCODE Processing Pipeline 0c85f53aa026fb044872c3aba070caf6 https://www.encodeproject.org/files/ENCFF414EUV/@@download/ENCFF414EUV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF376VVJ bam alignments ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF547KHV, ENCFF807MUK, ENCFF991UEV 3536392105 ENCODE Processing Pipeline d5e78f11fb3944929df864e3d228c14f https://www.encodeproject.org/files/ENCFF376VVJ/@@download/ENCFF376VVJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF982ODJ bigWig signal p-value ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF376VVJ, ENCFF460MTF 1475600110 ENCODE Processing Pipeline 3b069392b6d7bc90d0c8c1c7930e2d25 https://www.encodeproject.org/files/ENCFF982ODJ/@@download/ENCFF982ODJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF336UOE bigWig fold change over control ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF376VVJ, ENCFF460MTF 1707027001 ENCODE Processing Pipeline cebcc749173ac8163c81d67002986eb2 https://www.encodeproject.org/files/ENCFF336UOE/@@download/ENCFF336UOE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF249NQH bed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF376VVJ, ENCFF460MTF 6701374 ENCODE Processing Pipeline 8df7318798834bbce0ce98192ccbd380 https://www.encodeproject.org/files/ENCFF249NQH/@@download/ENCFF249NQH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF182GMU bigBed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF249NQH 11534889 ENCODE Processing Pipeline 94f049d0345e47e7a1363314e9926ca8 https://www.encodeproject.org/files/ENCFF182GMU/@@download/ENCFF182GMU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF637HAC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF249NQH 472059 ENCODE Processing Pipeline 7fb333c78f555b43e1243b1d146b7dbe https://www.encodeproject.org/files/ENCFF637HAC/@@download/ENCFF637HAC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF028IRX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF637HAC 877020 ENCODE Processing Pipeline 4a5ab813a4d4f02dcc972ad85587c840 https://www.encodeproject.org/files/ENCFF028IRX/@@download/ENCFF028IRX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF563ULC bigBed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF173WQR 11588242 ENCODE Processing Pipeline 5bdac3ae5b2bb872fd633097cfb6ffb2 https://www.encodeproject.org/files/ENCFF563ULC/@@download/ENCFF563ULC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF717BMW bigWig fold change over control ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF414EUV, ENCFF978YES 1683616319 ENCODE Processing Pipeline 9968d6fc1868755315f1c22fd3aea9d5 https://www.encodeproject.org/files/ENCFF717BMW/@@download/ENCFF717BMW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF173WQR bed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF414EUV, ENCFF978YES 6738191 ENCODE Processing Pipeline 6d126050fbac5f3b8ce18211480d4ab2 https://www.encodeproject.org/files/ENCFF173WQR/@@download/ENCFF173WQR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF668SIT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF173WQR, ENCFF419RSJ 486179 ENCODE Processing Pipeline e13e028083fd5b852426a547d77911d4 https://www.encodeproject.org/files/ENCFF668SIT/@@download/ENCFF668SIT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF255PSO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF668SIT 897450 ENCODE Processing Pipeline 5a3f8ba2fa7a5446192ddc422a273e64 https://www.encodeproject.org/files/ENCFF255PSO/@@download/ENCFF255PSO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF504OGO bigWig signal p-value ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF414EUV, ENCFF978YES 1750507133 ENCODE Processing Pipeline 5522ab18c234faeff5844480a28f3c59 https://www.encodeproject.org/files/ENCFF504OGO/@@download/ENCFF504OGO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF335PHG fastq reads ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 1 76 single-ended 1603821067 Bradley Bernstein, Broad 629b0309a8172d7ac441a7e5b491f143 SRA:SRR5832895 https://www.encodeproject.org/files/ENCFF335PHG/@@download/ENCFF335PHG.fastq.gz Illumina HiSeq 2500 /files/ENCFF000BWK/ released control low read depth, inconsistent control read length, inconsistent platforms ENCFF049ACQ fastq reads ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 1 76 single-ended 1849616254 Bradley Bernstein, Broad 71055fedd6243673ebe3341b73f34174 SRA:SRR5832894 https://www.encodeproject.org/files/ENCFF049ACQ/@@download/ENCFF049ACQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF283HQV/, /files/ENCFF994FIB/ released control low read depth, inconsistent control read length, inconsistent platforms ENCFF284DKI bam unfiltered alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 76 ENCFF049ACQ, ENCFF807MUK 2178542673 ENCODE Processing Pipeline 6c78a0767a0860453f2a4419e77dee1a https://www.encodeproject.org/files/ENCFF284DKI/@@download/ENCFF284DKI.bam hg19 released control low read depth, inconsistent platforms ENCFF153CXX bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 76 ENCFF049ACQ, ENCFF807MUK 1686672734 ENCODE Processing Pipeline ed8c7bccae280fb41cea549c452f4d6e https://www.encodeproject.org/files/ENCFF153CXX/@@download/ENCFF153CXX.bam hg19 released control low read depth, inconsistent platforms ENCFF846NAU bam unfiltered alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 36 ENCFF335PHG, ENCFF643CGH 1312494189 ENCODE Processing Pipeline 6096cde337a6e49ea5ed4c396781b5c5 https://www.encodeproject.org/files/ENCFF846NAU/@@download/ENCFF846NAU.bam GRCh38 released control low read depth, inconsistent platforms ENCFF652HPU bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 36 ENCFF335PHG, ENCFF643CGH 891175496 ENCODE Processing Pipeline 6fcb5f2265c4f979bb78773678d302bf https://www.encodeproject.org/files/ENCFF652HPU/@@download/ENCFF652HPU.bam GRCh38 released control low read depth, inconsistent platforms ENCFF207FFX bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 36 ENCFF335PHG, ENCFF807MUK 891808670 ENCODE Processing Pipeline ff51664e73e6fd94b6237e238db5054f https://www.encodeproject.org/files/ENCFF207FFX/@@download/ENCFF207FFX.bam hg19 released control low read depth, inconsistent platforms ENCFF195FHZ bam unfiltered alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 36 ENCFF335PHG, ENCFF807MUK 1292197717 ENCODE Processing Pipeline a1040ee7d73dae53969c97ce165861bb https://www.encodeproject.org/files/ENCFF195FHZ/@@download/ENCFF195FHZ.bam hg19 released control low read depth, inconsistent platforms ENCFF297BFH bam unfiltered alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 36 ENCFF049ACQ, ENCFF807MUK 1419432027 ENCODE Processing Pipeline 7b5fde0240b476afc39eed333042b19a https://www.encodeproject.org/files/ENCFF297BFH/@@download/ENCFF297BFH.bam hg19 released control low read depth, inconsistent platforms ENCFF341TKS bam unfiltered alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 36 ENCFF049ACQ, ENCFF643CGH 1437646449 ENCODE Processing Pipeline c5a9ff7ce768bef5e14e76e3b5e4b5a5 https://www.encodeproject.org/files/ENCFF341TKS/@@download/ENCFF341TKS.bam GRCh38 released control low read depth, inconsistent platforms ENCFF162YLU bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 36 ENCFF049ACQ, ENCFF807MUK 950466739 ENCODE Processing Pipeline 133331581179c2cf2b4e22ce8e00db4d https://www.encodeproject.org/files/ENCFF162YLU/@@download/ENCFF162YLU.bam hg19 released control low read depth, inconsistent platforms ENCFF860JBC bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 36 ENCFF049ACQ, ENCFF643CGH 949838539 ENCODE Processing Pipeline 0132ad941e85df5864d4e19c81c4bc46 https://www.encodeproject.org/files/ENCFF860JBC/@@download/ENCFF860JBC.bam GRCh38 released control low read depth, inconsistent platforms ENCFF343SBB bigWig signal p-value ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 582154059 ENCODE Processing Pipeline f37f0ef95f17caff66e43b91dc73ee8e https://www.encodeproject.org/files/ENCFF343SBB/@@download/ENCFF343SBB.bigWig hg19 released control low read depth, inconsistent platforms ENCFF005YPU bigWig signal p-value ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF162YLU, ENCFF245PJA 350899943 ENCODE Processing Pipeline 14ed5b52b91186f080a34d08a50ca8ba https://www.encodeproject.org/files/ENCFF005YPU/@@download/ENCFF005YPU.bigWig hg19 released control low read depth, inconsistent platforms ENCFF653LAC bigWig fold change over control ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 592936869 ENCODE Processing Pipeline a526710b75e1e582b8c8ea454494a02b https://www.encodeproject.org/files/ENCFF653LAC/@@download/ENCFF653LAC.bigWig hg19 released control low read depth, inconsistent platforms ENCFF980MNI bigWig signal p-value ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF829HZY, ENCFF860JBC 350552687 ENCODE Processing Pipeline 73670bd42f62fc5a6f8ca3ca19b76d4f https://www.encodeproject.org/files/ENCFF980MNI/@@download/ENCFF980MNI.bigWig GRCh38 released control low read depth, inconsistent platforms ENCFF579YSO bigWig fold change over control ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF392XRJ, ENCFF652HPU, ENCFF829HZY 599975145 ENCODE Processing Pipeline e1286a189e1197113308b9edf37457fd https://www.encodeproject.org/files/ENCFF579YSO/@@download/ENCFF579YSO.bigWig GRCh38 released control low read depth, inconsistent platforms ENCFF126ZAR bigWig signal p-value ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF392XRJ, ENCFF652HPU, ENCFF829HZY 553414567 ENCODE Processing Pipeline b28b44324d3724a851c530a61f7da4c0 https://www.encodeproject.org/files/ENCFF126ZAR/@@download/ENCFF126ZAR.bigWig GRCh38 released control low read depth, inconsistent platforms ENCFF777BWF bigWig signal p-value ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF392XRJ, ENCFF652HPU, ENCFF829HZY, ENCFF860JBC 682933533 ENCODE Processing Pipeline 7c26487f4d6e2bddda26bc3aeddcb0ca https://www.encodeproject.org/files/ENCFF777BWF/@@download/ENCFF777BWF.bigWig GRCh38 released control low read depth, inconsistent platforms ENCFF360QPF bigWig signal p-value ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF162YLU, ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 683527554 ENCODE Processing Pipeline 42a1b6b6dafd02a37afc9a5090866fa2 https://www.encodeproject.org/files/ENCFF360QPF/@@download/ENCFF360QPF.bigWig hg19 released control low read depth, inconsistent platforms ENCFF119IJS bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF392XRJ, ENCFF652HPU, ENCFF829HZY, ENCFF860JBC 4446870 ENCODE Processing Pipeline 7defd19a814aff71e31ce686a45db6db https://www.encodeproject.org/files/ENCFF119IJS/@@download/ENCFF119IJS.bed.gz GRCh38 released control low read depth, inconsistent platforms ENCFF726ZOI bigWig fold change over control ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF829HZY, ENCFF860JBC 461182263 ENCODE Processing Pipeline 4d76de56e459a9355e61febac0c42455 https://www.encodeproject.org/files/ENCFF726ZOI/@@download/ENCFF726ZOI.bigWig GRCh38 released control low read depth, inconsistent platforms ENCFF324AFU bigWig fold change over control ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF162YLU, ENCFF245PJA 460322428 ENCODE Processing Pipeline 4c4ba04b45eae06f2d41434b1fa82fb4 https://www.encodeproject.org/files/ENCFF324AFU/@@download/ENCFF324AFU.bigWig hg19 released control low read depth, inconsistent platforms ENCFF064FWV bigBed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF191IRT 13022781 ENCODE Processing Pipeline ba8f73cbba0b74a808f35c30e7a66c27 https://www.encodeproject.org/files/ENCFF064FWV/@@download/ENCFF064FWV.bigBed GRCh38 released control low read depth, inconsistent platforms ENCFF522VTB bigBed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF267CBS 13083035 ENCODE Processing Pipeline 1ed767c6070efeac2447b8e9ae84ef5c https://www.encodeproject.org/files/ENCFF522VTB/@@download/ENCFF522VTB.bigBed hg19 released control low read depth, inconsistent platforms ENCFF888JOO bigWig fold change over control ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF392XRJ, ENCFF652HPU, ENCFF829HZY, ENCFF860JBC 910987259 ENCODE Processing Pipeline e35fff822210c5ba63b8868786f345d4 https://www.encodeproject.org/files/ENCFF888JOO/@@download/ENCFF888JOO.bigWig GRCh38 released control low read depth, inconsistent platforms ENCFF191IRT bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF392XRJ, ENCFF652HPU, ENCFF829HZY 6457184 ENCODE Processing Pipeline 2084f98a66769daa66716ad4d9208174 https://www.encodeproject.org/files/ENCFF191IRT/@@download/ENCFF191IRT.bed.gz GRCh38 released control low read depth, inconsistent platforms ENCFF884DZX bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF829HZY, ENCFF860JBC 5978308 ENCODE Processing Pipeline e692e8265200557dc1c3583c6057e0d4 https://www.encodeproject.org/files/ENCFF884DZX/@@download/ENCFF884DZX.bed.gz GRCh38 released control low read depth, inconsistent platforms ENCFF118EOA bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF162YLU, ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 4441877 ENCODE Processing Pipeline a073d466810f865c5036a394aa4150d3 https://www.encodeproject.org/files/ENCFF118EOA/@@download/ENCFF118EOA.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF260JHC bigWig fold change over control ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF162YLU, ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 914997230 ENCODE Processing Pipeline dd9df99795afa3037c9056960a7d1374 https://www.encodeproject.org/files/ENCFF260JHC/@@download/ENCFF260JHC.bigWig hg19 released control low read depth, inconsistent platforms ENCFF875ITP bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 6496431 ENCODE Processing Pipeline 573f75d1fa10e63ede230866edb301d9 https://www.encodeproject.org/files/ENCFF875ITP/@@download/ENCFF875ITP.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF267CBS bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF162YLU, ENCFF245PJA 5987659 ENCODE Processing Pipeline ddfca0067976c24be42533ed23458433 https://www.encodeproject.org/files/ENCFF267CBS/@@download/ENCFF267CBS.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF931WLQ bigBed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF875ITP 12995713 ENCODE Processing Pipeline c6ecb19ee08801fe8fc8f62aab40c58a https://www.encodeproject.org/files/ENCFF931WLQ/@@download/ENCFF931WLQ.bigBed hg19 released control low read depth, inconsistent platforms ENCFF714XHL bed narrowPeak optimal idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF118EOA, ENCFF267CBS, ENCFF875ITP 153694 ENCODE Processing Pipeline cfcf61727521d15bd154f71181a11674 https://www.encodeproject.org/files/ENCFF714XHL/@@download/ENCFF714XHL.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF119UHG bigBed narrowPeak optimal idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF714XHL 409637 ENCODE Processing Pipeline a3c1b710d387c12344bd1b0442e2e7ca https://www.encodeproject.org/files/ENCFF119UHG/@@download/ENCFF119UHG.bigBed hg19 released control low read depth, inconsistent platforms ENCFF932ZPG bigBed narrowPeak conservative idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF868NFS 334469 ENCODE Processing Pipeline 3fcd0ff85e3d17c5dd4ab6af4c887d87 https://www.encodeproject.org/files/ENCFF932ZPG/@@download/ENCFF932ZPG.bigBed hg19 released control low read depth, inconsistent platforms ENCFF825ZCR bed narrowPeak conservative idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF119IJS, ENCFF191IRT, ENCFF419RSJ, ENCFF884DZX 115699 ENCODE Processing Pipeline 82a72bac4ab2f8aa5d1f0565b3cd2857 https://www.encodeproject.org/files/ENCFF825ZCR/@@download/ENCFF825ZCR.bed.gz GRCh38 released control low read depth, inconsistent platforms ENCFF763XST bigBed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF118EOA 8277021 ENCODE Processing Pipeline ef4777c62f0efea4be7ca8c872779da0 https://www.encodeproject.org/files/ENCFF763XST/@@download/ENCFF763XST.bigBed hg19 released control low read depth, inconsistent platforms ENCFF868NFS bed narrowPeak conservative idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF118EOA, ENCFF267CBS, ENCFF875ITP 115468 ENCODE Processing Pipeline 50594c6a20322d3d1c79fd80752cd463 https://www.encodeproject.org/files/ENCFF868NFS/@@download/ENCFF868NFS.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF855GPH bigBed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF884DZX 13082388 ENCODE Processing Pipeline 91e1ff148709a9f26c590711365d2555 https://www.encodeproject.org/files/ENCFF855GPH/@@download/ENCFF855GPH.bigBed GRCh38 released control low read depth, inconsistent platforms ENCFF885GIF bigBed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF119IJS 8289563 ENCODE Processing Pipeline 2d7541e39257984745eb33fe8f881965 https://www.encodeproject.org/files/ENCFF885GIF/@@download/ENCFF885GIF.bigBed GRCh38 released control low read depth, inconsistent platforms ENCFF667QYI bigBed narrowPeak conservative idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF825ZCR 334836 ENCODE Processing Pipeline 32837bbf19f3f53ea7583e21d291e5e3 https://www.encodeproject.org/files/ENCFF667QYI/@@download/ENCFF667QYI.bigBed GRCh38 released control low read depth, inconsistent platforms ENCFF308TDI bigBed narrowPeak optimal idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF806CQB 419592 ENCODE Processing Pipeline d0866787e5e4f8fa795d981bc724d2ba https://www.encodeproject.org/files/ENCFF308TDI/@@download/ENCFF308TDI.bigBed GRCh38 released control low read depth, inconsistent platforms ENCFF806CQB bed narrowPeak optimal idr thresholded peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF119IJS, ENCFF191IRT, ENCFF419RSJ, ENCFF884DZX 158450 ENCODE Processing Pipeline 6c11ae767907b2c40166f00135ee589e https://www.encodeproject.org/files/ENCFF806CQB/@@download/ENCFF806CQB.bed.gz GRCh38 released control low read depth, inconsistent platforms ENCFF188UON bam unfiltered alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF259AYK, ENCFF693GDA, ENCFF807MUK 4962852802 ENCODE Processing Pipeline fa944a5bf768ac9ffdd52e3daf87973f https://www.encodeproject.org/files/ENCFF188UON/@@download/ENCFF188UON.bam hg19 released ENCFF419LOA bam unfiltered alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF238FNW, ENCFF693CFR, ENCFF807MUK 4429935891 ENCODE Processing Pipeline 0512e04f772183399a5db3757e6a1f01 https://www.encodeproject.org/files/ENCFF419LOA/@@download/ENCFF419LOA.bam hg19 released ENCFF693CFR fastq reads ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF238FNW 1978407783 Michael Snyder, Stanford 10ac7c64c3d5bb5456ecce390d0cd5e5 SRA:SRR5111554 https://www.encodeproject.org/files/ENCFF693CFR/@@download/ENCFF693CFR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF693GDA fastq reads ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF259AYK 2283128978 Michael Snyder, Stanford 6a5e63d18908c61aa3f4dc609c368a2c SRA:SRR5111555 https://www.encodeproject.org/files/ENCFF693GDA/@@download/ENCFF693GDA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF259AYK fastq reads ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF693GDA 2272823836 Michael Snyder, Stanford 71f39f310e3b43f84b7c9a673e4b5675 SRA:SRR5111555 https://www.encodeproject.org/files/ENCFF259AYK/@@download/ENCFF259AYK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF238FNW fastq reads ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF693CFR 2052755704 Michael Snyder, Stanford d6e74135ca69c3df387d22cd957efeff SRA:SRR5111554 https://www.encodeproject.org/files/ENCFF238FNW/@@download/ENCFF238FNW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF539VZJ bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF238FNW, ENCFF693CFR, ENCFF807MUK 3792637366 ENCODE Processing Pipeline 72caaa2bf015821c1be30c35b6ac9a66 https://www.encodeproject.org/files/ENCFF539VZJ/@@download/ENCFF539VZJ.bam hg19 released ENCFF063DLZ bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF259AYK, ENCFF693GDA, ENCFF807MUK 4155588807 ENCODE Processing Pipeline cfad64744db976ad3b90fc5772b5ab56 https://www.encodeproject.org/files/ENCFF063DLZ/@@download/ENCFF063DLZ.bam hg19 released ENCFF667ZWW bigWig signal p-value ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF539VZJ 1084220003 ENCODE Processing Pipeline d069b04a4f4407393bf46a7e4565f049 https://www.encodeproject.org/files/ENCFF667ZWW/@@download/ENCFF667ZWW.bigWig hg19 released ENCFF914GUM bigWig fold change over control ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF539VZJ 1057102236 ENCODE Processing Pipeline cf31bacf4ae8cc5be35a3e1f46e9588e https://www.encodeproject.org/files/ENCFF914GUM/@@download/ENCFF914GUM.bigWig hg19 released ENCFF783HJX bam unfiltered alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF238FNW, ENCFF643CGH, ENCFF693CFR 4434668233 ENCODE Processing Pipeline a377d61d619e93d8980782a85448e7ea https://www.encodeproject.org/files/ENCFF783HJX/@@download/ENCFF783HJX.bam GRCh38 released ENCFF884PHH bam unfiltered alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF259AYK, ENCFF643CGH, ENCFF693GDA 4967855179 ENCODE Processing Pipeline ed2fc76956d42e67d0829c99cc2479de https://www.encodeproject.org/files/ENCFF884PHH/@@download/ENCFF884PHH.bam GRCh38 released ENCFF563DGZ bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF238FNW, ENCFF643CGH, ENCFF693CFR 3796278466 ENCODE Processing Pipeline cc31ce6b083588fa8fd37e3d016e1c17 https://www.encodeproject.org/files/ENCFF563DGZ/@@download/ENCFF563DGZ.bam GRCh38 released ENCFF750EKT bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF259AYK, ENCFF643CGH, ENCFF693GDA 4158977060 ENCODE Processing Pipeline ffa7643e6686dff80273079b23ba6526 https://www.encodeproject.org/files/ENCFF750EKT/@@download/ENCFF750EKT.bam GRCh38 released ENCFF119WHI bigWig signal p-value ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF750EKT, ENCFF910IKB 1161355321 ENCODE Processing Pipeline 03cfd6fdf2568f290d17f2fcb8fdd2b7 https://www.encodeproject.org/files/ENCFF119WHI/@@download/ENCFF119WHI.bigWig GRCh38 released ENCFF243GWI bigWig signal p-value ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF563DGZ 1060465574 ENCODE Processing Pipeline 4416528194970741cba830e148a11f13 https://www.encodeproject.org/files/ENCFF243GWI/@@download/ENCFF243GWI.bigWig GRCh38 released ENCFF361TVB bigWig signal p-value ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF563DGZ, ENCFF750EKT, ENCFF910IKB 1992646330 ENCODE Processing Pipeline 30a92b60be9ff6a2c3d3cb0912a43419 https://www.encodeproject.org/files/ENCFF361TVB/@@download/ENCFF361TVB.bigWig GRCh38 released ENCFF336IHE bigWig fold change over control ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF750EKT, ENCFF910IKB 1140373128 ENCODE Processing Pipeline f12f97d20d0399d245906e344dfb8c17 https://www.encodeproject.org/files/ENCFF336IHE/@@download/ENCFF336IHE.bigWig GRCh38 released ENCFF559DOZ bigWig fold change over control ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF563DGZ 1057735004 ENCODE Processing Pipeline 631147152913a3c50a148ca613e1cc91 https://www.encodeproject.org/files/ENCFF559DOZ/@@download/ENCFF559DOZ.bigWig GRCh38 released ENCFF905FAZ bigWig fold change over control ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF563DGZ, ENCFF750EKT, ENCFF910IKB 2052742468 ENCODE Processing Pipeline bfb386667ba55d7a035faef50e0fe1e6 https://www.encodeproject.org/files/ENCFF905FAZ/@@download/ENCFF905FAZ.bigWig GRCh38 released ENCFF555TEL bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF750EKT, ENCFF910IKB 6657617 ENCODE Processing Pipeline 5ffc028e5f6966158b641136d09a2ec2 https://www.encodeproject.org/files/ENCFF555TEL/@@download/ENCFF555TEL.bed.gz GRCh38 released ENCFF522CRC bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF563DGZ 6744559 ENCODE Processing Pipeline fdfb738531591607b7a83d3a74eb0f1a https://www.encodeproject.org/files/ENCFF522CRC/@@download/ENCFF522CRC.bed.gz GRCh38 released ENCFF930YEZ bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF563DGZ, ENCFF750EKT, ENCFF910IKB 7232862 ENCODE Processing Pipeline f5625116dea33ad50cfcfcf0e294a06d https://www.encodeproject.org/files/ENCFF930YEZ/@@download/ENCFF930YEZ.bed.gz GRCh38 released ENCFF153MTW bigBed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF555TEL 13161730 ENCODE Processing Pipeline 9bb8ba97c95eff16dd18cca5651c719d https://www.encodeproject.org/files/ENCFF153MTW/@@download/ENCFF153MTW.bigBed GRCh38 released ENCFF228CZV bigBed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF522CRC 13121417 ENCODE Processing Pipeline b337e490fd587e07f4d039278c70fca6 https://www.encodeproject.org/files/ENCFF228CZV/@@download/ENCFF228CZV.bigBed GRCh38 released ENCFF955PON bigBed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF930YEZ 12930185 ENCODE Processing Pipeline 4b3c6a39786d0d0e23f58d3aca58da30 https://www.encodeproject.org/files/ENCFF955PON/@@download/ENCFF955PON.bigBed GRCh38 released ENCFF558XIL bed narrowPeak optimal idr thresholded peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF522CRC, ENCFF555TEL, ENCFF930YEZ 278755 ENCODE Processing Pipeline 8d835dff011022794af375901627d2ee https://www.encodeproject.org/files/ENCFF558XIL/@@download/ENCFF558XIL.bed.gz GRCh38 released ENCFF540UXO bigBed narrowPeak optimal idr thresholded peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF558XIL 589268 ENCODE Processing Pipeline a2861ffd68bb9f881f3018860ce86a67 https://www.encodeproject.org/files/ENCFF540UXO/@@download/ENCFF540UXO.bigBed GRCh38 released ENCFF996EFD bigWig signal p-value ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF063DLZ, ENCFF581ZJL 1219952694 ENCODE Processing Pipeline 3297d20dc2737e2d3b57531bce4bc15a https://www.encodeproject.org/files/ENCFF996EFD/@@download/ENCFF996EFD.bigWig hg19 released ENCFF304NUO bigBed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF084ILX 13161547 ENCODE Processing Pipeline 7e268e5e32177f7cdd495bb306e38aa0 https://www.encodeproject.org/files/ENCFF304NUO/@@download/ENCFF304NUO.bigBed hg19 released ENCFF355WVV bigWig fold change over control ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF063DLZ, ENCFF581ZJL 1136921478 ENCODE Processing Pipeline 9de3a1b13adbeea2669e9c297cd99a6c https://www.encodeproject.org/files/ENCFF355WVV/@@download/ENCFF355WVV.bigWig hg19 released ENCFF925QKK bigWig fold change over control ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF063DLZ, ENCFF539VZJ, ENCFF581ZJL 2067117330 ENCODE Processing Pipeline 8437f31a676a9ca3fd096f75dce64e18 https://www.encodeproject.org/files/ENCFF925QKK/@@download/ENCFF925QKK.bigWig hg19 released ENCFF778TXT bed narrowPeak conservative idr thresholded peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF084ILX, ENCFF605LJE, ENCFF850ENR 284610 ENCODE Processing Pipeline 37c88c600d2774186bc3228c17581896 https://www.encodeproject.org/files/ENCFF778TXT/@@download/ENCFF778TXT.bed.gz hg19 released ENCFF024JWM bigWig signal p-value ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF063DLZ, ENCFF539VZJ, ENCFF581ZJL 1737633751 ENCODE Processing Pipeline 67a309a92a41be3ff2834a36169a7597 https://www.encodeproject.org/files/ENCFF024JWM/@@download/ENCFF024JWM.bigWig hg19 released ENCFF298HZA bigBed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF850ENR 13096942 ENCODE Processing Pipeline f0e696186f42c101f8d78512e8daca35 https://www.encodeproject.org/files/ENCFF298HZA/@@download/ENCFF298HZA.bigBed hg19 released ENCFF647VHP bigBed narrowPeak optimal idr thresholded peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF662MVX 749526 ENCODE Processing Pipeline 8d542b9ee0b487c4b79e9d501f858be4 https://www.encodeproject.org/files/ENCFF647VHP/@@download/ENCFF647VHP.bigBed hg19 released ENCFF084ILX bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF063DLZ, ENCFF581ZJL 6667597 ENCODE Processing Pipeline 360bae6f96a56e295c8cf96a5d962f32 https://www.encodeproject.org/files/ENCFF084ILX/@@download/ENCFF084ILX.bed.gz hg19 released ENCFF850ENR bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF539VZJ 6735588 ENCODE Processing Pipeline f1a7d7acf30f8769e3ec52429b8541d6 https://www.encodeproject.org/files/ENCFF850ENR/@@download/ENCFF850ENR.bed.gz hg19 released ENCFF605LJE bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF063DLZ, ENCFF539VZJ, ENCFF581ZJL 7237606 ENCODE Processing Pipeline 86a80d8937e56eb9206edddc2230c24d https://www.encodeproject.org/files/ENCFF605LJE/@@download/ENCFF605LJE.bed.gz hg19 released ENCFF483GTX bigBed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF605LJE 12927004 ENCODE Processing Pipeline b42234f213f762363ca19de25dca4f96 https://www.encodeproject.org/files/ENCFF483GTX/@@download/ENCFF483GTX.bigBed hg19 released ENCFF772AAB bigBed narrowPeak conservative idr thresholded peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF778TXT 592134 ENCODE Processing Pipeline 73a2a9802381fa69b69a5c9e5ffb8ea2 https://www.encodeproject.org/files/ENCFF772AAB/@@download/ENCFF772AAB.bigBed hg19 released ENCFF662MVX bed narrowPeak optimal idr thresholded peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF084ILX, ENCFF605LJE, ENCFF850ENR 384677 ENCODE Processing Pipeline 21d4fc2074ca86610ddb256b957f4bfa https://www.encodeproject.org/files/ENCFF662MVX/@@download/ENCFF662MVX.bed.gz hg19 released ENCFF973HMK fastq reads ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF534XBR 2557619072 Michael Snyder, Stanford 3970c12121b36408593551d6d67a2e88 SRA:SRR6212713 https://www.encodeproject.org/files/ENCFF973HMK/@@download/ENCFF973HMK.fastq.gz Illumina HiSeq 4000 /files/ENCFF747GMM/ released antibody characterized with exemption ENCFF534XBR fastq reads ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF973HMK 2884399884 Michael Snyder, Stanford 0da57f5cbb36bd1bc10997cfa64d5925 SRA:SRR6212713 https://www.encodeproject.org/files/ENCFF534XBR/@@download/ENCFF534XBR.fastq.gz Illumina HiSeq 4000 /files/ENCFF868HAY/ released antibody characterized with exemption ENCFF459CMP bam unfiltered alignments ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF534XBR, ENCFF807MUK, ENCFF973HMK 5202584122 ENCODE Processing Pipeline 6f419222c354a9f6c86591e1f78bad03 https://www.encodeproject.org/files/ENCFF459CMP/@@download/ENCFF459CMP.bam hg19 released antibody characterized with exemption ENCFF354AJH bam alignments ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF534XBR, ENCFF807MUK, ENCFF973HMK 3838414267 ENCODE Processing Pipeline 4baec0a37f119ed658af75a93e955d5c https://www.encodeproject.org/files/ENCFF354AJH/@@download/ENCFF354AJH.bam hg19 released antibody characterized with exemption ENCFF618WIM bam unfiltered alignments ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF534XBR, ENCFF643CGH, ENCFF973HMK 5207725117 ENCODE Processing Pipeline 31f8f17d201129e2a3f9b24b473aca37 https://www.encodeproject.org/files/ENCFF618WIM/@@download/ENCFF618WIM.bam GRCh38 released antibody characterized with exemption ENCFF807HHA bam alignments ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF534XBR, ENCFF643CGH, ENCFF973HMK 3843769924 ENCODE Processing Pipeline 17e3129db065ce216ae1ceab95e8ba80 https://www.encodeproject.org/files/ENCFF807HHA/@@download/ENCFF807HHA.bam GRCh38 released antibody characterized with exemption ENCFF845EGH bigWig signal p-value ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF354AJH, ENCFF976VAT 1287566619 ENCODE Processing Pipeline 623b4ac988dac5636cdfbfaf03eaf5ae https://www.encodeproject.org/files/ENCFF845EGH/@@download/ENCFF845EGH.bigWig hg19 released antibody characterized with exemption ENCFF277CSB bigWig fold change over control ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF354AJH, ENCFF976VAT 1423271536 ENCODE Processing Pipeline 783dc40e9ebb5cff659f4ae7fb77c5d4 https://www.encodeproject.org/files/ENCFF277CSB/@@download/ENCFF277CSB.bigWig hg19 released antibody characterized with exemption ENCFF167CVF bed narrowPeak peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF354AJH, ENCFF976VAT 6819289 ENCODE Processing Pipeline 2935b91b05715056a513a6d09466f978 https://www.encodeproject.org/files/ENCFF167CVF/@@download/ENCFF167CVF.bed.gz hg19 released antibody characterized with exemption ENCFF822OTY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF167CVF 390634 ENCODE Processing Pipeline 4d323420c943e3249ae379392d1c379f https://www.encodeproject.org/files/ENCFF822OTY/@@download/ENCFF822OTY.bed.gz hg19 released antibody characterized with exemption ENCFF996ERN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF822OTY 851581 ENCODE Processing Pipeline 045bc98c501068b6f7ff583206d3a766 https://www.encodeproject.org/files/ENCFF996ERN/@@download/ENCFF996ERN.bigBed hg19 released antibody characterized with exemption ENCFF041ILL bigBed narrowPeak peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF167CVF 13563160 ENCODE Processing Pipeline 37c64104241c0596aba836ab545e26c7 https://www.encodeproject.org/files/ENCFF041ILL/@@download/ENCFF041ILL.bigBed hg19 released antibody characterized with exemption ENCFF394ZUH bed narrowPeak peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF242TYP, ENCFF807HHA 6788840 ENCODE Processing Pipeline ee541bce86c57a68fc244caa757c7ea1 https://www.encodeproject.org/files/ENCFF394ZUH/@@download/ENCFF394ZUH.bed.gz GRCh38 released antibody characterized with exemption ENCFF853NXH bigWig signal p-value ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF242TYP, ENCFF807HHA 1310839821 ENCODE Processing Pipeline 27b390790d93ed41319629eb21d70334 https://www.encodeproject.org/files/ENCFF853NXH/@@download/ENCFF853NXH.bigWig GRCh38 released antibody characterized with exemption ENCFF198EUQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF394ZUH, ENCFF419RSJ 387483 ENCODE Processing Pipeline 7ebd7f77c4c7b187d28aede6216cc343 https://www.encodeproject.org/files/ENCFF198EUQ/@@download/ENCFF198EUQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF114OIH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF198EUQ 848253 ENCODE Processing Pipeline 443edd28aa139aa96cadaf2180b8d901 https://www.encodeproject.org/files/ENCFF114OIH/@@download/ENCFF114OIH.bigBed GRCh38 released antibody characterized with exemption ENCFF950NNK bigWig fold change over control ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF242TYP, ENCFF807HHA 1426507275 ENCODE Processing Pipeline 34fcff123767a423a2a678dffa6f2c57 https://www.encodeproject.org/files/ENCFF950NNK/@@download/ENCFF950NNK.bigWig GRCh38 released antibody characterized with exemption ENCFF399DBS bigBed narrowPeak peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF394ZUH 13535158 ENCODE Processing Pipeline cc0aa7bdb2ab083686f6e933a2122ae0 https://www.encodeproject.org/files/ENCFF399DBS/@@download/ENCFF399DBS.bigBed GRCh38 released antibody characterized with exemption ENCFF947LDP fastq reads ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF163EIH 2148048917 Michael Snyder, Stanford dd14565414e6717e683bf8043f15c0df SRA:SRR6213075 https://www.encodeproject.org/files/ENCFF947LDP/@@download/ENCFF947LDP.fastq.gz Illumina HiSeq 4000 /files/ENCFF568ZUY/ released antibody characterized with exemption ENCFF163EIH fastq reads ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF947LDP 1927291768 Michael Snyder, Stanford 9208c1381bf0eec30ef3c88180aca40c SRA:SRR6213075 https://www.encodeproject.org/files/ENCFF163EIH/@@download/ENCFF163EIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF878DLI/ released antibody characterized with exemption ENCFF796HDV bam unfiltered alignments ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF163EIH, ENCFF807MUK, ENCFF947LDP 3793341153 ENCODE Processing Pipeline 2f4b1a37610aea9de1b36a6beb0c4147 https://www.encodeproject.org/files/ENCFF796HDV/@@download/ENCFF796HDV.bam hg19 released antibody characterized with exemption ENCFF244RSE bam alignments ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF163EIH, ENCFF807MUK, ENCFF947LDP 3277376222 ENCODE Processing Pipeline 7384fd05238a09446a769665cf1409c8 https://www.encodeproject.org/files/ENCFF244RSE/@@download/ENCFF244RSE.bam hg19 released antibody characterized with exemption ENCFF044KLO bam unfiltered alignments ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF163EIH, ENCFF643CGH, ENCFF947LDP 3796484915 ENCODE Processing Pipeline 0709922d5c1295c278c5437cfc30e890 https://www.encodeproject.org/files/ENCFF044KLO/@@download/ENCFF044KLO.bam GRCh38 released antibody characterized with exemption ENCFF124ZGE bam alignments ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF163EIH, ENCFF643CGH, ENCFF947LDP 3277810314 ENCODE Processing Pipeline 930405c06d3d068529a63508a8f6b0bd https://www.encodeproject.org/files/ENCFF124ZGE/@@download/ENCFF124ZGE.bam GRCh38 released antibody characterized with exemption ENCFF841AAT bed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF124ZGE, ENCFF607WQU 6015202 ENCODE Processing Pipeline 9ddcc6027bf7eaea56c318593127e9ba https://www.encodeproject.org/files/ENCFF841AAT/@@download/ENCFF841AAT.bed.gz GRCh38 released antibody characterized with exemption ENCFF405KIK bigWig signal p-value ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF124ZGE, ENCFF607WQU 1080030400 ENCODE Processing Pipeline 351be8593f2cff4d12dc7952b260fe20 https://www.encodeproject.org/files/ENCFF405KIK/@@download/ENCFF405KIK.bigWig GRCh38 released antibody characterized with exemption ENCFF788GYB bigWig fold change over control ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF124ZGE, ENCFF607WQU 936641780 ENCODE Processing Pipeline e8e1b1298087ef067783eb4b59450da4 https://www.encodeproject.org/files/ENCFF788GYB/@@download/ENCFF788GYB.bigWig GRCh38 released antibody characterized with exemption ENCFF549EFL bigBed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF841AAT 12015957 ENCODE Processing Pipeline fd9abb058b87355b0d004db55a0ef0f4 https://www.encodeproject.org/files/ENCFF549EFL/@@download/ENCFF549EFL.bigBed GRCh38 released antibody characterized with exemption ENCFF610UCL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF841AAT 564432 ENCODE Processing Pipeline f71a8d88f791f9fbdafa4bdea5e50f1a https://www.encodeproject.org/files/ENCFF610UCL/@@download/ENCFF610UCL.bed.gz GRCh38 released antibody characterized with exemption ENCFF130VKX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF610UCL 1104210 ENCODE Processing Pipeline af4eb1583e1c0db290f214e194c33290 https://www.encodeproject.org/files/ENCFF130VKX/@@download/ENCFF130VKX.bigBed GRCh38 released antibody characterized with exemption ENCFF622QGA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF263MVV 842438 ENCODE Processing Pipeline 0ccf339db1698f8f69bbfebac6687253 https://www.encodeproject.org/files/ENCFF622QGA/@@download/ENCFF622QGA.bed.gz hg19 released antibody characterized with exemption ENCFF108ILF bigWig signal p-value ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF244RSE, ENCFF639BGL 1078573505 ENCODE Processing Pipeline 624b0d931008efd937b8ee25f0fbb8c7 https://www.encodeproject.org/files/ENCFF108ILF/@@download/ENCFF108ILF.bigWig hg19 released antibody characterized with exemption ENCFF519LVF bigWig fold change over control ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF244RSE, ENCFF639BGL 935205489 ENCODE Processing Pipeline ef70c5e16059042ed0f235692e4698d1 https://www.encodeproject.org/files/ENCFF519LVF/@@download/ENCFF519LVF.bigWig hg19 released antibody characterized with exemption ENCFF263MVV bed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF244RSE, ENCFF639BGL 5954022 ENCODE Processing Pipeline c1d52c20c5dfa9e2c17b268a4a309f4a https://www.encodeproject.org/files/ENCFF263MVV/@@download/ENCFF263MVV.bed.gz hg19 released antibody characterized with exemption ENCFF916PHB bigBed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF263MVV 11930020 ENCODE Processing Pipeline eff6f6bea9e0f38a5a484d9420de9744 https://www.encodeproject.org/files/ENCFF916PHB/@@download/ENCFF916PHB.bigBed hg19 released antibody characterized with exemption ENCFF875SAZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF622QGA 1463685 ENCODE Processing Pipeline ceec0b46adf4d294e614095b664f4fe3 https://www.encodeproject.org/files/ENCFF875SAZ/@@download/ENCFF875SAZ.bigBed hg19 released antibody characterized with exemption ENCFF972RFP fastq reads ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 640240478 Xiang-Dong Fu, UCSD e7155c49ad37490989472f88a38495e2 SRA:SRR6213905 https://www.encodeproject.org/files/ENCFF972RFP/@@download/ENCFF972RFP.fastq.gz Illumina HiSeq 2500 /files/ENCFF089EYX/ released low read length, mild to moderate bottlenecking, low read depth ENCFF698TRM fastq reads ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 700519321 Xiang-Dong Fu, UCSD 423242cefe4d816746e2e884dc1baac3 SRA:SRR6213906 https://www.encodeproject.org/files/ENCFF698TRM/@@download/ENCFF698TRM.fastq.gz Illumina HiSeq 2500 /files/ENCFF419XJY/ released low read length, mild to moderate bottlenecking, low read depth ENCFF573SRY bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF972RFP 565103063 ENCODE Processing Pipeline 0064307108ebc18f812bbb43e8d2f708 https://www.encodeproject.org/files/ENCFF573SRY/@@download/ENCFF573SRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF285OGB bam unfiltered alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF698TRM, ENCFF807MUK 933852243 ENCODE Processing Pipeline 04c4140041b1d3d06f012a8a6a106db9 https://www.encodeproject.org/files/ENCFF285OGB/@@download/ENCFF285OGB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF514LUN bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF698TRM, ENCFF807MUK 585278677 ENCODE Processing Pipeline 57be23c40c7ef7ee8de8fba986e3c9e8 https://www.encodeproject.org/files/ENCFF514LUN/@@download/ENCFF514LUN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF260ZIQ bam unfiltered alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF972RFP 863376076 ENCODE Processing Pipeline c8fe7049d05c196bf40a23c8b6695dea https://www.encodeproject.org/files/ENCFF260ZIQ/@@download/ENCFF260ZIQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF026PAK bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF972RFP 564497431 ENCODE Processing Pipeline 441207bf3f75ff61875370b542ff06b4 https://www.encodeproject.org/files/ENCFF026PAK/@@download/ENCFF026PAK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF245TRX bam unfiltered alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF972RFP 867097093 ENCODE Processing Pipeline 019897aa52b89c2b295cc355ba58da73 https://www.encodeproject.org/files/ENCFF245TRX/@@download/ENCFF245TRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF336VGN bam unfiltered alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF698TRM 938092148 ENCODE Processing Pipeline 8ef898f4e412d33d53b1d11ce89c8687 https://www.encodeproject.org/files/ENCFF336VGN/@@download/ENCFF336VGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF439AGS bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF698TRM 584700841 ENCODE Processing Pipeline 500f51497123938f331f5e19f80d3061 https://www.encodeproject.org/files/ENCFF439AGS/@@download/ENCFF439AGS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF949TAT bigWig fold change over control ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF573SRY 359801835 ENCODE Processing Pipeline 3ba4a2ff636aeb87bcb05a19e319f957 https://www.encodeproject.org/files/ENCFF949TAT/@@download/ENCFF949TAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF952MRN bigWig signal p-value ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF321CYT, ENCFF514LUN 544660129 ENCODE Processing Pipeline 25a562e2f6619d86b848ec6d796365e5 https://www.encodeproject.org/files/ENCFF952MRN/@@download/ENCFF952MRN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF318WXW bigWig signal p-value ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF514LUN, ENCFF573SRY 914790219 ENCODE Processing Pipeline 056ef0b4885227c628399cf29dea1ffb https://www.encodeproject.org/files/ENCFF318WXW/@@download/ENCFF318WXW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF667AJI bigWig signal p-value ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF573SRY 576407984 ENCODE Processing Pipeline a4bc8942795dfd5ed2d1b82db2ef2a78 https://www.encodeproject.org/files/ENCFF667AJI/@@download/ENCFF667AJI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF136KKG bigWig fold change over control ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF321CYT, ENCFF514LUN 411898226 ENCODE Processing Pipeline adffaae42bb1475b8b3a8f71e218c0ec https://www.encodeproject.org/files/ENCFF136KKG/@@download/ENCFF136KKG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF174JFC bigWig fold change over control ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF514LUN, ENCFF573SRY 884348625 ENCODE Processing Pipeline a71a463719aa6526fa2f18108728c3ca https://www.encodeproject.org/files/ENCFF174JFC/@@download/ENCFF174JFC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF501SMZ bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF573SRY 5315049 ENCODE Processing Pipeline 42017006100aada57107d4935adbead8 https://www.encodeproject.org/files/ENCFF501SMZ/@@download/ENCFF501SMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF013REF bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF321CYT, ENCFF514LUN 5482870 ENCODE Processing Pipeline 2f77da514212a67e6b9b46c0f1f7fb40 https://www.encodeproject.org/files/ENCFF013REF/@@download/ENCFF013REF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF524TKP bigBed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF838LKB 13455854 ENCODE Processing Pipeline 2ee155d21f28c9a988ac51b18d8edbd4 https://www.encodeproject.org/files/ENCFF524TKP/@@download/ENCFF524TKP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF643VQE bigBed narrowPeak optimal idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF010STZ 349964 ENCODE Processing Pipeline 161b24d5691c1fac3c987bf56017eb9f https://www.encodeproject.org/files/ENCFF643VQE/@@download/ENCFF643VQE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF838LKB bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF514LUN, ENCFF573SRY 6696807 ENCODE Processing Pipeline bda0d47c90aa43da4a155d81eda82233 https://www.encodeproject.org/files/ENCFF838LKB/@@download/ENCFF838LKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF119JMJ bigBed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF501SMZ 13294736 ENCODE Processing Pipeline 2ca3c90fbb2c7790eb9677826e54be51 https://www.encodeproject.org/files/ENCFF119JMJ/@@download/ENCFF119JMJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF650VQU bed narrowPeak conservative idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF013REF, ENCFF501SMZ, ENCFF838LKB 128541 ENCODE Processing Pipeline 4a3962a08ffd5b8a05af4443c46c931f https://www.encodeproject.org/files/ENCFF650VQU/@@download/ENCFF650VQU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF283DWT bigBed narrowPeak conservative idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF650VQU 327566 ENCODE Processing Pipeline 0eb497f339f2a88163039bdbece28cc3 https://www.encodeproject.org/files/ENCFF283DWT/@@download/ENCFF283DWT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF025CAN bigBed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF013REF 13320293 ENCODE Processing Pipeline 8ef63a9e949e250031a8d99b8b8e165b https://www.encodeproject.org/files/ENCFF025CAN/@@download/ENCFF025CAN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF010STZ bed narrowPeak optimal idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF013REF, ENCFF501SMZ, ENCFF838LKB 141550 ENCODE Processing Pipeline 96e79c69c0c270cedd9c75735c44d6bf https://www.encodeproject.org/files/ENCFF010STZ/@@download/ENCFF010STZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF906WLY bigWig signal p-value ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF026PAK, ENCFF661ZRO 549227799 ENCODE Processing Pipeline bd3498699e0317ef88445200632e3eb1 https://www.encodeproject.org/files/ENCFF906WLY/@@download/ENCFF906WLY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF820AIH bigWig signal p-value ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF439AGS, ENCFF872FDX 544032928 ENCODE Processing Pipeline 4e14bad58e6b3513a96d831f03e6f3f3 https://www.encodeproject.org/files/ENCFF820AIH/@@download/ENCFF820AIH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF731YBN bigWig fold change over control ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF439AGS, ENCFF872FDX 411244153 ENCODE Processing Pipeline 06994a7274ef77ab12f37a5b2a803cca https://www.encodeproject.org/files/ENCFF731YBN/@@download/ENCFF731YBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF076EFI bigBed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF738KOC 13481541 ENCODE Processing Pipeline 15643233bec85abae965dd0a4c7fcf46 https://www.encodeproject.org/files/ENCFF076EFI/@@download/ENCFF076EFI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF984ESZ bed narrowPeak optimal idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF384TDQ, ENCFF419RSJ, ENCFF738KOC, ENCFF828TKC 143082 ENCODE Processing Pipeline 0a672143b873eb78e87ffda8ffbbe0c8 https://www.encodeproject.org/files/ENCFF984ESZ/@@download/ENCFF984ESZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF137KQF bigWig signal p-value ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF026PAK, ENCFF439AGS, ENCFF661ZRO, ENCFF872FDX 936256418 ENCODE Processing Pipeline 146dd280219c5d22340550b64e72dd24 https://www.encodeproject.org/files/ENCFF137KQF/@@download/ENCFF137KQF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF828TKC bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF026PAK, ENCFF661ZRO 5292964 ENCODE Processing Pipeline 7acf50d0cbbb4cf7f9cf4d64aeeba7e4 https://www.encodeproject.org/files/ENCFF828TKC/@@download/ENCFF828TKC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF384TDQ bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF439AGS, ENCFF872FDX 5488590 ENCODE Processing Pipeline d87ae6afd879c71992dd42a897adc9ea https://www.encodeproject.org/files/ENCFF384TDQ/@@download/ENCFF384TDQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF447DXS bigWig fold change over control ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF026PAK, ENCFF439AGS, ENCFF661ZRO, ENCFF872FDX 892164033 ENCODE Processing Pipeline 4984ee4d6cb8f41e1c07958bc0f41af1 https://www.encodeproject.org/files/ENCFF447DXS/@@download/ENCFF447DXS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF738KOC bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF026PAK, ENCFF439AGS, ENCFF661ZRO, ENCFF872FDX 6685151 ENCODE Processing Pipeline 1c1b507976eb9ad7829632e911bc828a https://www.encodeproject.org/files/ENCFF738KOC/@@download/ENCFF738KOC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF490ZXD bigWig fold change over control ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF026PAK, ENCFF661ZRO 380957216 ENCODE Processing Pipeline 53d9a51f010d5c81a314a755a815e288 https://www.encodeproject.org/files/ENCFF490ZXD/@@download/ENCFF490ZXD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF752BIP bigBed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF828TKC 13306284 ENCODE Processing Pipeline df9f98fd1277a0614e417851a4463256 https://www.encodeproject.org/files/ENCFF752BIP/@@download/ENCFF752BIP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF682JRN bed narrowPeak conservative idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF384TDQ, ENCFF419RSJ, ENCFF738KOC, ENCFF828TKC 129344 ENCODE Processing Pipeline 6fe2f9239e018acc1f6c8c6113b43bab https://www.encodeproject.org/files/ENCFF682JRN/@@download/ENCFF682JRN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF681DNE bigBed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF384TDQ 13332652 ENCODE Processing Pipeline f48ae2a6acac426517093227752a95aa https://www.encodeproject.org/files/ENCFF681DNE/@@download/ENCFF681DNE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF629GYT bigBed narrowPeak conservative idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF682JRN 331113 ENCODE Processing Pipeline 79a27fb32be06cd374eed2c2a380efa9 https://www.encodeproject.org/files/ENCFF629GYT/@@download/ENCFF629GYT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF779NTZ bigBed narrowPeak optimal idr thresholded peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF984ESZ 354789 ENCODE Processing Pipeline a8ce785f0461e6d84413693e7eb7dabb https://www.encodeproject.org/files/ENCFF779NTZ/@@download/ENCFF779NTZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF001RUH fastq reads ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1480878217 Richard Myers, HAIB c16ac9408e33823e42fd1133fd2146c9 SRA:SRR5331591 https://www.encodeproject.org/files/ENCFF001RUH/@@download/ENCFF001RUH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, antibody characterized with exemption ENCFF001RUI fastq reads ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1559150340 Richard Myers, HAIB a600ab1dc96375bf2d7975dce928dc32 SRA:SRR5331590 https://www.encodeproject.org/files/ENCFF001RUI/@@download/ENCFF001RUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVP/ released low read depth, antibody characterized with exemption ENCFF427TQP bigWig fold change over control ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF012IGR, ENCFF061QOJ, ENCFF527GGD, ENCFF578ISP 1271113685 ENCODE Processing Pipeline 4183f71156f0b6f997351f8f0d030019 https://www.encodeproject.org/files/ENCFF427TQP/@@download/ENCFF427TQP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF691MGC bigWig signal p-value ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF012IGR, ENCFF061QOJ, ENCFF527GGD, ENCFF578ISP 1326771089 ENCODE Processing Pipeline e06d810716c9ed4897848e71bef2b1f3 https://www.encodeproject.org/files/ENCFF691MGC/@@download/ENCFF691MGC.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF463AYG bam unfiltered alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUH, ENCFF643CGH 1580201262 ENCODE Processing Pipeline a11fbc346a4fb63f033f628de065334f https://www.encodeproject.org/files/ENCFF463AYG/@@download/ENCFF463AYG.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF735PTW bam unfiltered alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUI, ENCFF643CGH 1674219884 ENCODE Processing Pipeline 9862a7eb37a6af23a0334ce1e5d30270 https://www.encodeproject.org/files/ENCFF735PTW/@@download/ENCFF735PTW.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF677BBS bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUI, ENCFF643CGH 1241088305 ENCODE Processing Pipeline 128e9cfe034d16507d3bc51c92cd3771 https://www.encodeproject.org/files/ENCFF677BBS/@@download/ENCFF677BBS.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF983RUX bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUH, ENCFF643CGH 1153392054 ENCODE Processing Pipeline b73068fdac151ee94d27a4e009b927e8 https://www.encodeproject.org/files/ENCFF983RUX/@@download/ENCFF983RUX.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF437KWO bigWig signal p-value ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF121DUE, ENCFF677BBS 876281877 ENCODE Processing Pipeline 07928b239ae8ef985e58b1844f0f176b https://www.encodeproject.org/files/ENCFF437KWO/@@download/ENCFF437KWO.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF781GHU bigWig signal p-value ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF983RUX 693545852 ENCODE Processing Pipeline 02f790212fc1d754d28b90292fb07bd2 https://www.encodeproject.org/files/ENCFF781GHU/@@download/ENCFF781GHU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF455FBB bigWig signal p-value ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF121DUE, ENCFF332SVJ, ENCFF677BBS, ENCFF983RUX 1280583447 ENCODE Processing Pipeline ea1a39af7374eb130685dca3d2523518 https://www.encodeproject.org/files/ENCFF455FBB/@@download/ENCFF455FBB.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF492JGM bigWig fold change over control ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF121DUE, ENCFF677BBS 596686013 ENCODE Processing Pipeline b3bef352044217ccce0ccb21c6e5fabf https://www.encodeproject.org/files/ENCFF492JGM/@@download/ENCFF492JGM.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF527LDL bigWig fold change over control ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF983RUX 522924648 ENCODE Processing Pipeline 603b68da5cf3f4330667578710605810 https://www.encodeproject.org/files/ENCFF527LDL/@@download/ENCFF527LDL.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF442BPG bigWig fold change over control ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF121DUE, ENCFF332SVJ, ENCFF677BBS, ENCFF983RUX 1248418248 ENCODE Processing Pipeline ff18c6f8ab9e706c0bf0f6b3288be34f https://www.encodeproject.org/files/ENCFF442BPG/@@download/ENCFF442BPG.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF823BLX bigBed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF933RQE 11175202 ENCODE Processing Pipeline 9e7a8e1da9883b8bb53bf68fa116a3c4 https://www.encodeproject.org/files/ENCFF823BLX/@@download/ENCFF823BLX.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF090LNP bigBed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF775JQN 11405699 ENCODE Processing Pipeline 8488f0af981670730ac7c2f787c36097 https://www.encodeproject.org/files/ENCFF090LNP/@@download/ENCFF090LNP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF692UXG bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF983RUX 5096786 ENCODE Processing Pipeline f99d7704310b119804fde0f9e66e8957 https://www.encodeproject.org/files/ENCFF692UXG/@@download/ENCFF692UXG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF933RQE bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF121DUE, ENCFF677BBS 5145493 ENCODE Processing Pipeline 11a191ad1719dfa3fd71f2ae995cf63c https://www.encodeproject.org/files/ENCFF933RQE/@@download/ENCFF933RQE.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF775JQN bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF121DUE, ENCFF332SVJ, ENCFF677BBS, ENCFF983RUX 6525116 ENCODE Processing Pipeline 319a5a7cf20096c69ee770664e2d48b4 https://www.encodeproject.org/files/ENCFF775JQN/@@download/ENCFF775JQN.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF761BJK bigBed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF692UXG 11058907 ENCODE Processing Pipeline 9d6f1dceee888637d7e958cd3fb0a0b3 https://www.encodeproject.org/files/ENCFF761BJK/@@download/ENCFF761BJK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF830UEH bed narrowPeak conservative idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF692UXG, ENCFF775JQN, ENCFF933RQE 120652 ENCODE Processing Pipeline fa200eedc4e96c25daeacf1ebc412940 https://www.encodeproject.org/files/ENCFF830UEH/@@download/ENCFF830UEH.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF071NYD bed narrowPeak optimal idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF692UXG, ENCFF775JQN, ENCFF933RQE 138537 ENCODE Processing Pipeline 529e27cb03d15bfeee667ecbcfc0a4bf https://www.encodeproject.org/files/ENCFF071NYD/@@download/ENCFF071NYD.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF347CNP bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF830UEH 237762 ENCODE Processing Pipeline a35beccaad4e4ce20fde0c2fbcd61494 https://www.encodeproject.org/files/ENCFF347CNP/@@download/ENCFF347CNP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF193HSB bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF071NYD 315803 ENCODE Processing Pipeline 46061efbc875c61cac9d2d6b85f75e6b https://www.encodeproject.org/files/ENCFF193HSB/@@download/ENCFF193HSB.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF502SWV bam unfiltered alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUI, ENCFF807MUK 1670536675 ENCODE Processing Pipeline 549755219aa5a2bed27a27a7d5f19e8c https://www.encodeproject.org/files/ENCFF502SWV/@@download/ENCFF502SWV.bam hg19 released low read depth, antibody characterized with exemption ENCFF012IGR bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUI, ENCFF807MUK 1241523705 ENCODE Processing Pipeline d0bf75cc52f6b6a559a482c3c7ea2334 https://www.encodeproject.org/files/ENCFF012IGR/@@download/ENCFF012IGR.bam hg19 released low read depth, antibody characterized with exemption ENCFF077BCA bam unfiltered alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUH, ENCFF807MUK 1577181969 ENCODE Processing Pipeline 49b2276076f7c8139a884cef523c7932 https://www.encodeproject.org/files/ENCFF077BCA/@@download/ENCFF077BCA.bam hg19 released low read depth, antibody characterized with exemption ENCFF527GGD bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUH, ENCFF807MUK 1153861968 ENCODE Processing Pipeline 51288055255fa5fef100954b6c5f43bc https://www.encodeproject.org/files/ENCFF527GGD/@@download/ENCFF527GGD.bam hg19 released low read depth, antibody characterized with exemption ENCFF304WLL bigWig fold change over control ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF012IGR, ENCFF578ISP 598239403 ENCODE Processing Pipeline 908b6c890deb2fb0cffe4d8686b568b7 https://www.encodeproject.org/files/ENCFF304WLL/@@download/ENCFF304WLL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF616LVN bed narrowPeak optimal idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF175RNO, ENCFF373SQY, ENCFF472YHR 130606 ENCODE Processing Pipeline b10e96e443b6ef583669219f71f72a11 https://www.encodeproject.org/files/ENCFF616LVN/@@download/ENCFF616LVN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF582FUR bigWig fold change over control ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF527GGD 539880543 ENCODE Processing Pipeline e15ec4b52583c7ca5006c5935c1eb2cb https://www.encodeproject.org/files/ENCFF582FUR/@@download/ENCFF582FUR.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF175RNO bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF012IGR, ENCFF061QOJ, ENCFF527GGD, ENCFF578ISP 6524209 ENCODE Processing Pipeline b006770fcaf5952edc18c06c66e6941d https://www.encodeproject.org/files/ENCFF175RNO/@@download/ENCFF175RNO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF112FJR bigWig signal p-value ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF527GGD 709555043 ENCODE Processing Pipeline 43e0e9a187a250f4e717d54107303333 https://www.encodeproject.org/files/ENCFF112FJR/@@download/ENCFF112FJR.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF472YHR bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF527GGD 5360673 ENCODE Processing Pipeline 3eef564b1fbc3ea5f95219df16d69765 https://www.encodeproject.org/files/ENCFF472YHR/@@download/ENCFF472YHR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF050UWJ bigWig signal p-value ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF012IGR, ENCFF578ISP 750447473 ENCODE Processing Pipeline 93d15c598714406e3247892b19ae6761 https://www.encodeproject.org/files/ENCFF050UWJ/@@download/ENCFF050UWJ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF224CHN bigBed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF175RNO 11375341 ENCODE Processing Pipeline 33dc80308193c77e6a927de63232d665 https://www.encodeproject.org/files/ENCFF224CHN/@@download/ENCFF224CHN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF373SQY bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF012IGR, ENCFF578ISP 5147423 ENCODE Processing Pipeline 73a37eb0fe3c63684da32b63ebfb2efc https://www.encodeproject.org/files/ENCFF373SQY/@@download/ENCFF373SQY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF195WNG bigBed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF373SQY 11165611 ENCODE Processing Pipeline f3289bde1ead8c68ab625703685a3933 https://www.encodeproject.org/files/ENCFF195WNG/@@download/ENCFF195WNG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF096AYG bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF616LVN 304039 ENCODE Processing Pipeline 65692d0dc56d49712deb42385bb02430 https://www.encodeproject.org/files/ENCFF096AYG/@@download/ENCFF096AYG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF954ZEK bigBed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF472YHR 11130941 ENCODE Processing Pipeline 63f561601a41a675e7f18e13f8470b7e https://www.encodeproject.org/files/ENCFF954ZEK/@@download/ENCFF954ZEK.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF522LWR bed narrowPeak conservative idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF175RNO, ENCFF373SQY, ENCFF472YHR 116149 ENCODE Processing Pipeline 834438d958584db57bb090e19d02c420 https://www.encodeproject.org/files/ENCFF522LWR/@@download/ENCFF522LWR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF272SYB bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF522LWR 230652 ENCODE Processing Pipeline 03f1a0cf9f019abdaddbab48a0740ef9 https://www.encodeproject.org/files/ENCFF272SYB/@@download/ENCFF272SYB.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF970NLP fastq reads ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 431641060 Xiang-Dong Fu, UCSD 0205b88874a1a14ca59a4415e3a9aa64 SRA:SRR6213029 https://www.encodeproject.org/files/ENCFF970NLP/@@download/ENCFF970NLP.fastq.gz Illumina HiSeq 2500 /files/ENCFF510UAH/ released low read length, low read depth ENCFF761RTS fastq reads ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 446053581 Xiang-Dong Fu, UCSD 68e21d9c6814f678148be8351aafdbff SRA:SRR6213030 https://www.encodeproject.org/files/ENCFF761RTS/@@download/ENCFF761RTS.fastq.gz Illumina HiSeq 2500 /files/ENCFF092DDZ/ released low read length, low read depth ENCFF586AEL bam unfiltered alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF970NLP 604758083 ENCODE Processing Pipeline 0e850815ce6711ca9377d1c882bc728c https://www.encodeproject.org/files/ENCFF586AEL/@@download/ENCFF586AEL.bam hg19 released low read length, low read depth ENCFF759PVZ bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF761RTS, ENCFF807MUK 449679272 ENCODE Processing Pipeline 7700bb25cfdd2c38d40baabefa534a1b https://www.encodeproject.org/files/ENCFF759PVZ/@@download/ENCFF759PVZ.bam hg19 released low read length, low read depth ENCFF188YBS bam unfiltered alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF970NLP 607251838 ENCODE Processing Pipeline ac43b07dc0914f69ca7f19c2d400848b https://www.encodeproject.org/files/ENCFF188YBS/@@download/ENCFF188YBS.bam GRCh38 released low read length, low read depth ENCFF958RAN bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF970NLP 438076916 ENCODE Processing Pipeline 7a6ba8e126f82d10fda5dcd72bf8cb69 https://www.encodeproject.org/files/ENCFF958RAN/@@download/ENCFF958RAN.bam hg19 released low read length, low read depth ENCFF059LDJ bam unfiltered alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF761RTS, ENCFF807MUK 623848568 ENCODE Processing Pipeline c77fafecc9216d97375bf9d5cb617234 https://www.encodeproject.org/files/ENCFF059LDJ/@@download/ENCFF059LDJ.bam hg19 released low read length, low read depth ENCFF361MTW bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF970NLP 437556134 ENCODE Processing Pipeline f89031a04ca2f0cb80656f3c73ca43f2 https://www.encodeproject.org/files/ENCFF361MTW/@@download/ENCFF361MTW.bam GRCh38 released low read length, low read depth ENCFF503JQK bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF761RTS 449126266 ENCODE Processing Pipeline 805ab6ca3a445c33c9bd5a25a75570b9 https://www.encodeproject.org/files/ENCFF503JQK/@@download/ENCFF503JQK.bam GRCh38 released low read length, low read depth ENCFF826ECD bam unfiltered alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF761RTS 626460842 ENCODE Processing Pipeline f3628cd3303b1c4e4fd4ff55a7497b84 https://www.encodeproject.org/files/ENCFF826ECD/@@download/ENCFF826ECD.bam GRCh38 released low read length, low read depth ENCFF281BEN bigWig signal p-value ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF361MTW, ENCFF721LZU 452491294 ENCODE Processing Pipeline 2fd2562c4368372df4ca3a51780bb80e https://www.encodeproject.org/files/ENCFF281BEN/@@download/ENCFF281BEN.bigWig GRCh38 released low read length, low read depth ENCFF598JTE bigWig signal p-value ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF958RAN 469838361 ENCODE Processing Pipeline 9c1b5e005fb827b3422217efc881e3c4 https://www.encodeproject.org/files/ENCFF598JTE/@@download/ENCFF598JTE.bigWig hg19 released low read length, low read depth ENCFF761OEF bigWig signal p-value ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF759PVZ, ENCFF958RAN 851748764 ENCODE Processing Pipeline 1ae3a9c850002c41270c1ac57f281a5a https://www.encodeproject.org/files/ENCFF761OEF/@@download/ENCFF761OEF.bigWig hg19 released low read length, low read depth ENCFF129RMB bigWig signal p-value ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF361MTW, ENCFF503JQK, ENCFF721LZU 864766882 ENCODE Processing Pipeline d25fe78aed48f41d4a4429ee0802ccb6 https://www.encodeproject.org/files/ENCFF129RMB/@@download/ENCFF129RMB.bigWig GRCh38 released low read length, low read depth ENCFF775PYP bigWig fold change over control ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF572OMD, ENCFF759PVZ 282568911 ENCODE Processing Pipeline 59a6d1f4b0db5df5b464ac2b27844233 https://www.encodeproject.org/files/ENCFF775PYP/@@download/ENCFF775PYP.bigWig hg19 released low read length, low read depth ENCFF389HBW bigWig signal p-value ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF572OMD, ENCFF759PVZ 464865344 ENCODE Processing Pipeline 8540c1955f23a3efce6c0f136cbf3af4 https://www.encodeproject.org/files/ENCFF389HBW/@@download/ENCFF389HBW.bigWig hg19 released low read length, low read depth ENCFF128WPZ bigWig signal p-value ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF503JQK 503933921 ENCODE Processing Pipeline 44b433892f2a9797c9971ee9725c8e0a https://www.encodeproject.org/files/ENCFF128WPZ/@@download/ENCFF128WPZ.bigWig GRCh38 released low read length, low read depth ENCFF103YUM bigWig fold change over control ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF958RAN 301161309 ENCODE Processing Pipeline 67433cbff7ae83346d7475f15ae8cb3d https://www.encodeproject.org/files/ENCFF103YUM/@@download/ENCFF103YUM.bigWig hg19 released low read length, low read depth ENCFF635OPE bigWig fold change over control ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF361MTW, ENCFF721LZU 306841252 ENCODE Processing Pipeline 76c66cb57c152bca82e789d23bf2b9dd https://www.encodeproject.org/files/ENCFF635OPE/@@download/ENCFF635OPE.bigWig GRCh38 released low read length, low read depth ENCFF193ODS bigWig fold change over control ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF503JQK 285813242 ENCODE Processing Pipeline cba2910d37678979829502047aefb085 https://www.encodeproject.org/files/ENCFF193ODS/@@download/ENCFF193ODS.bigWig GRCh38 released low read length, low read depth ENCFF380ABG bigWig fold change over control ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF759PVZ, ENCFF958RAN 700598601 ENCODE Processing Pipeline ff3e413c9eb53a7cf98c5d61a36458da https://www.encodeproject.org/files/ENCFF380ABG/@@download/ENCFF380ABG.bigWig hg19 released low read length, low read depth ENCFF530LEM bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF958RAN 5274330 ENCODE Processing Pipeline 2976755b3d2aaca90dab9b9f90bc820b https://www.encodeproject.org/files/ENCFF530LEM/@@download/ENCFF530LEM.bed.gz hg19 released low read length, low read depth ENCFF644TNS bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF572OMD, ENCFF759PVZ 5160791 ENCODE Processing Pipeline 6bfa5f6bf5822a3bea2eb7fa002d3b3e https://www.encodeproject.org/files/ENCFF644TNS/@@download/ENCFF644TNS.bed.gz hg19 released low read length, low read depth ENCFF241PLE bigBed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF274GZP 13110380 ENCODE Processing Pipeline 50de8831e7132da9954604dfc34a357c https://www.encodeproject.org/files/ENCFF241PLE/@@download/ENCFF241PLE.bigBed GRCh38 released low read length, low read depth ENCFF782EKH bigBed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF644TNS 13144996 ENCODE Processing Pipeline c7f60bc53475313f45219a0c663e3a71 https://www.encodeproject.org/files/ENCFF782EKH/@@download/ENCFF782EKH.bigBed hg19 released low read length, low read depth ENCFF274GZP bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF503JQK 4987638 ENCODE Processing Pipeline 39afa1485a491dd0b07f3a2c9f954816 https://www.encodeproject.org/files/ENCFF274GZP/@@download/ENCFF274GZP.bed.gz GRCh38 released low read length, low read depth ENCFF442XTQ bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF361MTW, ENCFF503JQK, ENCFF721LZU 6261999 ENCODE Processing Pipeline 9510e6af8c5950d96724e5f85d61480e https://www.encodeproject.org/files/ENCFF442XTQ/@@download/ENCFF442XTQ.bed.gz GRCh38 released low read length, low read depth ENCFF589BOI bigWig fold change over control ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF361MTW, ENCFF503JQK, ENCFF721LZU 704285539 ENCODE Processing Pipeline 1d1e5befed18fa1c2b325a69fe44325c https://www.encodeproject.org/files/ENCFF589BOI/@@download/ENCFF589BOI.bigWig GRCh38 released low read length, low read depth ENCFF262DPM bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF361MTW, ENCFF721LZU 5107532 ENCODE Processing Pipeline ff9d0e272ed8771ec4ef1bb737156416 https://www.encodeproject.org/files/ENCFF262DPM/@@download/ENCFF262DPM.bed.gz GRCh38 released low read length, low read depth ENCFF495FUA bigBed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF262DPM 13179180 ENCODE Processing Pipeline 057950a576c23f4b5fc9ec2961ba6cd7 https://www.encodeproject.org/files/ENCFF495FUA/@@download/ENCFF495FUA.bigBed GRCh38 released low read length, low read depth ENCFF399MLN bigBed narrowPeak conservative idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF500ARI 147882 ENCODE Processing Pipeline 343744cef4dc1ec6686bf973ca0e28c8 https://www.encodeproject.org/files/ENCFF399MLN/@@download/ENCFF399MLN.bigBed GRCh38 released low read length, low read depth ENCFF192IFJ bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF759PVZ, ENCFF958RAN 6427776 ENCODE Processing Pipeline 9344208dd7f4d437d626e0d79ddafdbf https://www.encodeproject.org/files/ENCFF192IFJ/@@download/ENCFF192IFJ.bed.gz hg19 released low read length, low read depth ENCFF338REW bigBed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF530LEM 13183395 ENCODE Processing Pipeline cd2909a2938f2f8b4244c2f04164ccde https://www.encodeproject.org/files/ENCFF338REW/@@download/ENCFF338REW.bigBed hg19 released low read length, low read depth ENCFF470RGJ bigBed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF442XTQ 13395850 ENCODE Processing Pipeline 3f59f629690b64f398c3d81c15bff639 https://www.encodeproject.org/files/ENCFF470RGJ/@@download/ENCFF470RGJ.bigBed GRCh38 released low read length, low read depth ENCFF500ARI bed narrowPeak conservative idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF262DPM, ENCFF274GZP, ENCFF419RSJ, ENCFF442XTQ 46852 ENCODE Processing Pipeline 8d6385845c0399752fdb68dcb8b10824 https://www.encodeproject.org/files/ENCFF500ARI/@@download/ENCFF500ARI.bed.gz GRCh38 released low read length, low read depth ENCFF135WSQ bigBed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF192IFJ 13333681 ENCODE Processing Pipeline 2aedb75c798741996b856df21309bc86 https://www.encodeproject.org/files/ENCFF135WSQ/@@download/ENCFF135WSQ.bigBed hg19 released low read length, low read depth ENCFF137NMV bed narrowPeak conservative idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF192IFJ, ENCFF530LEM, ENCFF644TNS 43766 ENCODE Processing Pipeline 1c6065554450cecca473c16a3b270d08 https://www.encodeproject.org/files/ENCFF137NMV/@@download/ENCFF137NMV.bed.gz hg19 released low read length, low read depth ENCFF516VRQ bigBed narrowPeak conservative idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF137NMV 140794 ENCODE Processing Pipeline 206da6bf4f842f3830f81db8e2cff196 https://www.encodeproject.org/files/ENCFF516VRQ/@@download/ENCFF516VRQ.bigBed hg19 released low read length, low read depth ENCFF688ARM bed narrowPeak optimal idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF262DPM, ENCFF274GZP, ENCFF419RSJ, ENCFF442XTQ 51122 ENCODE Processing Pipeline 38a4b430c3a24e7315b8cd6dca8134ac https://www.encodeproject.org/files/ENCFF688ARM/@@download/ENCFF688ARM.bed.gz GRCh38 released low read length, low read depth ENCFF142CPK bed narrowPeak optimal idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF192IFJ, ENCFF530LEM, ENCFF644TNS 51659 ENCODE Processing Pipeline 9d78627b43ad26ec1f1ea21705cd7c92 https://www.encodeproject.org/files/ENCFF142CPK/@@download/ENCFF142CPK.bed.gz hg19 released low read length, low read depth ENCFF090LHF bigBed narrowPeak optimal idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF688ARM 155596 ENCODE Processing Pipeline 95442af6bf640a54aaf08c8281ec2144 https://www.encodeproject.org/files/ENCFF090LHF/@@download/ENCFF090LHF.bigBed GRCh38 released low read length, low read depth ENCFF049NDY bigBed narrowPeak optimal idr thresholded peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF142CPK 155001 ENCODE Processing Pipeline f698ecfacf95e88ce816fcedb37041e7 https://www.encodeproject.org/files/ENCFF049NDY/@@download/ENCFF049NDY.bigBed hg19 released low read length, low read depth ENCFF296JWD fastq reads ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF952JIY 1014213896 Richard Myers, HAIB c9c595e2c2ef2fd7c7ff036ccba26ac6 SRA:SRR6213057 https://www.encodeproject.org/files/ENCFF296JWD/@@download/ENCFF296JWD.fastq.gz Illumina HiSeq 2000 /files/ENCFF573BIK/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF952JIY fastq reads ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF296JWD 997926250 Richard Myers, HAIB 531f5326aee1478e71175945a430e088 SRA:SRR6213057 https://www.encodeproject.org/files/ENCFF952JIY/@@download/ENCFF952JIY.fastq.gz Illumina HiSeq 2000 /files/ENCFF534FKH/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF488XHE bam unfiltered alignments ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF296JWD, ENCFF643CGH, ENCFF952JIY 2565722714 ENCODE Processing Pipeline 42fe6b5a2aa07eb85fc693b2b702657e https://www.encodeproject.org/files/ENCFF488XHE/@@download/ENCFF488XHE.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF024VTM bam alignments ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF296JWD, ENCFF643CGH, ENCFF952JIY 1922058343 ENCODE Processing Pipeline 6a434313fd5e41e91305c7eb7c9adcb8 https://www.encodeproject.org/files/ENCFF024VTM/@@download/ENCFF024VTM.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF743KGQ bam unfiltered alignments ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF296JWD, ENCFF807MUK, ENCFF952JIY 2552718007 ENCODE Processing Pipeline 5510c19f2d38011309e6ffdd9ecdb9f1 https://www.encodeproject.org/files/ENCFF743KGQ/@@download/ENCFF743KGQ.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF734MVF bam alignments ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF296JWD, ENCFF807MUK, ENCFF952JIY 1921489874 ENCODE Processing Pipeline 043d0cf5a93d5d0dee0e6866900a5557 https://www.encodeproject.org/files/ENCFF734MVF/@@download/ENCFF734MVF.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF051KIV bigWig signal p-value ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF024VTM 831543178 ENCODE Processing Pipeline cde2c48f17fdb8819f2d22186e4f2b7e https://www.encodeproject.org/files/ENCFF051KIV/@@download/ENCFF051KIV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF266WPV bigBed narrowPeak peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF417FRP 11385478 ENCODE Processing Pipeline 41653627685e758ee8af7540aa2c19fd https://www.encodeproject.org/files/ENCFF266WPV/@@download/ENCFF266WPV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF417FRP bed narrowPeak peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF024VTM 4893847 ENCODE Processing Pipeline 5d5f15a7320fd809b942740523791a6a https://www.encodeproject.org/files/ENCFF417FRP/@@download/ENCFF417FRP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF031GKU bigWig fold change over control ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF024VTM 723718828 ENCODE Processing Pipeline 005c18bf873e74a1c68d69487e3df4c7 https://www.encodeproject.org/files/ENCFF031GKU/@@download/ENCFF031GKU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF079BIZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF417FRP, ENCFF419RSJ 201 ENCODE Processing Pipeline e67fb86c5101e81f485d31493fd6f829 https://www.encodeproject.org/files/ENCFF079BIZ/@@download/ENCFF079BIZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF993ZMK bed narrowPeak peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF734MVF 4865823 ENCODE Processing Pipeline a0d59ab605d344fde3564f85bcc92357 https://www.encodeproject.org/files/ENCFF993ZMK/@@download/ENCFF993ZMK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF804YJD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF079BIZ 14473 ENCODE Processing Pipeline ac839a6da01b384dae4dd5e45c775099 https://www.encodeproject.org/files/ENCFF804YJD/@@download/ENCFF804YJD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF303EZP bigWig signal p-value ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF734MVF 863882988 ENCODE Processing Pipeline 9d3d14fe919677124a8efc5fc1fb4005 https://www.encodeproject.org/files/ENCFF303EZP/@@download/ENCFF303EZP.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF331NEO bigWig fold change over control ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF734MVF 719100900 ENCODE Processing Pipeline b1c529e073df6bee06f34746573ecfa9 https://www.encodeproject.org/files/ENCFF331NEO/@@download/ENCFF331NEO.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF563SDF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF993ZMK 71 ENCODE Processing Pipeline 6a9db2046169e7a656e3b2a0d5d94ae6 https://www.encodeproject.org/files/ENCFF563SDF/@@download/ENCFF563SDF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF834UDV bigBed narrowPeak peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF993ZMK 11323336 ENCODE Processing Pipeline ba82a8c17633165dc888ed6eb858179f https://www.encodeproject.org/files/ENCFF834UDV/@@download/ENCFF834UDV.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF203OPM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF563SDF 13928 ENCODE Processing Pipeline 41b92bc017ab6cc5f7a927efde63d355 https://www.encodeproject.org/files/ENCFF203OPM/@@download/ENCFF203OPM.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF464OZG fastq reads ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF933ONW 4745004312 Michael Snyder, Stanford 0a84402ed430707a7842da93fe94ffc5 SRA:SRR6213070 https://www.encodeproject.org/files/ENCFF464OZG/@@download/ENCFF464OZG.fastq.gz Illumina HiSeq 4000 /files/ENCFF203FOV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF933ONW fastq reads ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF464OZG 4060948310 Michael Snyder, Stanford 26cc7d45e4f0a7156ffc853e80904195 SRA:SRR6213070 https://www.encodeproject.org/files/ENCFF933ONW/@@download/ENCFF933ONW.fastq.gz Illumina HiSeq 4000 /files/ENCFF194EWF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF313NFO bam unfiltered alignments ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF464OZG, ENCFF643CGH, ENCFF933ONW 7773409144 ENCODE Processing Pipeline 7cc4c8f6bb98edac5417bcc3144f546f https://www.encodeproject.org/files/ENCFF313NFO/@@download/ENCFF313NFO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF539DRE bam alignments ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF464OZG, ENCFF643CGH, ENCFF933ONW 5549431378 ENCODE Processing Pipeline 450798e46f18935127c5e63b9165caeb https://www.encodeproject.org/files/ENCFF539DRE/@@download/ENCFF539DRE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF345ASR bam unfiltered alignments ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF464OZG, ENCFF807MUK, ENCFF933ONW 7769116579 ENCODE Processing Pipeline f7fec05f26e86b467a6fb7efc6ab6591 https://www.encodeproject.org/files/ENCFF345ASR/@@download/ENCFF345ASR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF270VTL bam alignments ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF464OZG, ENCFF807MUK, ENCFF933ONW 5543429658 ENCODE Processing Pipeline 0ce78be4848ebf38eb1b2dd92d16479d https://www.encodeproject.org/files/ENCFF270VTL/@@download/ENCFF270VTL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF097TCA bigWig signal p-value ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF418QRN, ENCFF539DRE 1233687355 ENCODE Processing Pipeline 21c2c10797f8c5023b331f843bd1c390 https://www.encodeproject.org/files/ENCFF097TCA/@@download/ENCFF097TCA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF883EUI bigWig signal p-value ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF027GOA, ENCFF270VTL 1231680507 ENCODE Processing Pipeline 97254b02fd3077202a0868b484105446 https://www.encodeproject.org/files/ENCFF883EUI/@@download/ENCFF883EUI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF083XYK bigWig fold change over control ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF027GOA, ENCFF270VTL 1493811939 ENCODE Processing Pipeline 77ee28b8055d66769dee32ae1380c57d https://www.encodeproject.org/files/ENCFF083XYK/@@download/ENCFF083XYK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF353KQB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF967EOL 1437839 ENCODE Processing Pipeline de0089b1d3954ada5f777fc8a89ea172 https://www.encodeproject.org/files/ENCFF353KQB/@@download/ENCFF353KQB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF272KCH bigWig fold change over control ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF418QRN, ENCFF539DRE 1479440818 ENCODE Processing Pipeline 37f8853e06eac9e1921a42fc072ee3bc https://www.encodeproject.org/files/ENCFF272KCH/@@download/ENCFF272KCH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF046OHJ bed narrowPeak peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF418QRN, ENCFF539DRE 7084927 ENCODE Processing Pipeline 966bfb56b7b88a88db1584b8395a173e https://www.encodeproject.org/files/ENCFF046OHJ/@@download/ENCFF046OHJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF967EOL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF046OHJ, ENCFF419RSJ 624822 ENCODE Processing Pipeline ad3c57697b7568058643d1dd2517f542 https://www.encodeproject.org/files/ENCFF967EOL/@@download/ENCFF967EOL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF223LYF bed narrowPeak peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF027GOA, ENCFF270VTL 7037293 ENCODE Processing Pipeline ff21aa3ace4b79eb5c8a1f825fb6b198 https://www.encodeproject.org/files/ENCFF223LYF/@@download/ENCFF223LYF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF762XOO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF262QIB 1381150 ENCODE Processing Pipeline 4fc9bc7da6495997e30728168bb4e300 https://www.encodeproject.org/files/ENCFF762XOO/@@download/ENCFF762XOO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF027BQV bigBed narrowPeak peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF046OHJ 13502629 ENCODE Processing Pipeline 945c0f7cfb9d4656c10b29d0206c9341 https://www.encodeproject.org/files/ENCFF027BQV/@@download/ENCFF027BQV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF525AJZ bigBed narrowPeak peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF223LYF 13410634 ENCODE Processing Pipeline 333e8a7ff0474fd190b216bfe67006e3 https://www.encodeproject.org/files/ENCFF525AJZ/@@download/ENCFF525AJZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF262QIB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF223LYF 590987 ENCODE Processing Pipeline 9ff3f069d5a10886d3cb499440b0876a https://www.encodeproject.org/files/ENCFF262QIB/@@download/ENCFF262QIB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF751ZBO fastq reads ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF326ZSE 1987396310 Richard Myers, HAIB a0fed4a413207ca8a62310bddb008a3a SRA:SRR6213922 https://www.encodeproject.org/files/ENCFF751ZBO/@@download/ENCFF751ZBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF853XWN/ released antibody characterized with exemption missing control alignments ENCFF326ZSE fastq reads ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF751ZBO 2030986663 Richard Myers, HAIB 65575e699fc146ce976e218f63a17825 SRA:SRR6213922 https://www.encodeproject.org/files/ENCFF326ZSE/@@download/ENCFF326ZSE.fastq.gz Illumina HiSeq 2000 /files/ENCFF555QUG/ released antibody characterized with exemption missing control alignments ENCFF076HWD bam unfiltered alignments ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF326ZSE, ENCFF643CGH, ENCFF751ZBO 4887748249 ENCODE Processing Pipeline 74826ccdaf4934dddba4ed7b909fcd6f https://www.encodeproject.org/files/ENCFF076HWD/@@download/ENCFF076HWD.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF044SBQ bam unfiltered alignments ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF326ZSE, ENCFF751ZBO, ENCFF807MUK 4866242257 ENCODE Processing Pipeline bbc6b7232596cf272b9b5502a6db01f8 https://www.encodeproject.org/files/ENCFF044SBQ/@@download/ENCFF044SBQ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF211ZVW bam alignments ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF326ZSE, ENCFF643CGH, ENCFF751ZBO 3661102170 ENCODE Processing Pipeline c7da4ed9bde4b1b0bc8f40b7ccd9b88c https://www.encodeproject.org/files/ENCFF211ZVW/@@download/ENCFF211ZVW.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF392TYJ bam alignments ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF326ZSE, ENCFF751ZBO, ENCFF807MUK 3658628403 ENCODE Processing Pipeline bb29f62e762b89ff7d934b5c482b779d https://www.encodeproject.org/files/ENCFF392TYJ/@@download/ENCFF392TYJ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF363GGJ bed narrowPeak peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF211ZVW 4308903 ENCODE Processing Pipeline c13470b21b8d51d8a147392f0c234f65 https://www.encodeproject.org/files/ENCFF363GGJ/@@download/ENCFF363GGJ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF165XSM bigWig signal p-value ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF211ZVW 528093417 ENCODE Processing Pipeline 95e1f82c8c01c2a95aa0de9c6f912d54 https://www.encodeproject.org/files/ENCFF165XSM/@@download/ENCFF165XSM.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF049ZCB bigWig fold change over control ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF211ZVW 912403133 ENCODE Processing Pipeline 1767e6167ce741f89f94fbcf1913da7f https://www.encodeproject.org/files/ENCFF049ZCB/@@download/ENCFF049ZCB.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF049AQD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF079CRY 80228 ENCODE Processing Pipeline 3d32433fcea0b4d0935d3449c852ac87 https://www.encodeproject.org/files/ENCFF049AQD/@@download/ENCFF049AQD.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF018YQT bigBed narrowPeak peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF363GGJ 11394799 ENCODE Processing Pipeline ce7b0d691139653efdbf9debfd077fff https://www.encodeproject.org/files/ENCFF018YQT/@@download/ENCFF018YQT.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF079CRY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF363GGJ, ENCFF419RSJ 1642 ENCODE Processing Pipeline 9da9f1274242f43a7e81150dcbc6b981 https://www.encodeproject.org/files/ENCFF079CRY/@@download/ENCFF079CRY.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF287TWL bigWig signal p-value ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF392TYJ 527672786 ENCODE Processing Pipeline c43ddba2c5a422daf084f2d0190f83bf https://www.encodeproject.org/files/ENCFF287TWL/@@download/ENCFF287TWL.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF274HVH bigBed narrowPeak peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF640NTC 11364924 ENCODE Processing Pipeline 9c3647f8d84cb4a303fe8dac64517632 https://www.encodeproject.org/files/ENCFF274HVH/@@download/ENCFF274HVH.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF280TSK bigWig fold change over control ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF392TYJ 906921061 ENCODE Processing Pipeline c8a693ec93ba774a89e980d6ceeddb5c https://www.encodeproject.org/files/ENCFF280TSK/@@download/ENCFF280TSK.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF640NTC bed narrowPeak peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF392TYJ 4311906 ENCODE Processing Pipeline 65048a4c70c6c1c54868134545226084 https://www.encodeproject.org/files/ENCFF640NTC/@@download/ENCFF640NTC.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF052QTX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF640NTC 822 ENCODE Processing Pipeline ef32e319c3014e04386c902bb49f584b https://www.encodeproject.org/files/ENCFF052QTX/@@download/ENCFF052QTX.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF744NRV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF052QTX 16081 ENCODE Processing Pipeline ad61c07e723b9ea2d02403d149e04ff4 https://www.encodeproject.org/files/ENCFF744NRV/@@download/ENCFF744NRV.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF296YDQ fastq reads ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF255INZ 2274357108 Michael Snyder, Stanford 46c1a634945630efe0674400669159b6 SRA:SRR6213222 https://www.encodeproject.org/files/ENCFF296YDQ/@@download/ENCFF296YDQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF624TVL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF255INZ fastq reads ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF296YDQ 2714512525 Michael Snyder, Stanford 4192aaf2a05c3f0e88763ae8e87f91cd SRA:SRR6213222 https://www.encodeproject.org/files/ENCFF255INZ/@@download/ENCFF255INZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF974YEI/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF437HHZ bam unfiltered alignments ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF255INZ, ENCFF296YDQ, ENCFF807MUK 4708340753 ENCODE Processing Pipeline 8250932a32a19a4d131add9d4d143586 https://www.encodeproject.org/files/ENCFF437HHZ/@@download/ENCFF437HHZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF941RBT bam alignments ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF255INZ, ENCFF296YDQ, ENCFF807MUK 3384224074 ENCODE Processing Pipeline 81829f794741257cdc1c6bc92d96b085 https://www.encodeproject.org/files/ENCFF941RBT/@@download/ENCFF941RBT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF629ECZ bam unfiltered alignments ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF255INZ, ENCFF296YDQ, ENCFF643CGH 4712576830 ENCODE Processing Pipeline 60b14cbfc20b10589b22917aed3f3d81 https://www.encodeproject.org/files/ENCFF629ECZ/@@download/ENCFF629ECZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF436WOY bam alignments ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF255INZ, ENCFF296YDQ, ENCFF643CGH 3387294892 ENCODE Processing Pipeline 831f9db8d4930b8868287ce1de0c6304 https://www.encodeproject.org/files/ENCFF436WOY/@@download/ENCFF436WOY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF015URP bigWig signal p-value ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF716USG, ENCFF941RBT 1208906397 ENCODE Processing Pipeline f1dbe841f03bc157e080f35bb3fd6826 https://www.encodeproject.org/files/ENCFF015URP/@@download/ENCFF015URP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF719PVG bigWig fold change over control ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF716USG, ENCFF941RBT 1208230535 ENCODE Processing Pipeline a3167371b700eaf9af0d0ced76953b8d https://www.encodeproject.org/files/ENCFF719PVG/@@download/ENCFF719PVG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF749ROX bed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF716USG, ENCFF941RBT 6757803 ENCODE Processing Pipeline da994bad281aa7d2a9a58d49c59a1699 https://www.encodeproject.org/files/ENCFF749ROX/@@download/ENCFF749ROX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF985OZU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF749ROX 551277 ENCODE Processing Pipeline 84c26db4eba0b747753dc050e93cb523 https://www.encodeproject.org/files/ENCFF985OZU/@@download/ENCFF985OZU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF020DZY bigBed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF749ROX 13630587 ENCODE Processing Pipeline 1d3c206dbd67fcc157c07943e696a231 https://www.encodeproject.org/files/ENCFF020DZY/@@download/ENCFF020DZY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF852YGC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF985OZU 1200126 ENCODE Processing Pipeline 0227de91ea531c9551a346c839b7138a https://www.encodeproject.org/files/ENCFF852YGC/@@download/ENCFF852YGC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF123HFG bigWig signal p-value ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF436WOY, ENCFF719VPI 999501282 ENCODE Processing Pipeline 258faaacf878fb087607f6e8accb57e5 https://www.encodeproject.org/files/ENCFF123HFG/@@download/ENCFF123HFG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF167XIH bigWig fold change over control ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF436WOY, ENCFF719VPI 1194753732 ENCODE Processing Pipeline 72eac39047603f63a67f1216e76db5dd https://www.encodeproject.org/files/ENCFF167XIH/@@download/ENCFF167XIH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF100SKI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF106ONT, ENCFF419RSJ 550916 ENCODE Processing Pipeline 8b5dca38d0f33e2a732fcd316e99ca96 https://www.encodeproject.org/files/ENCFF100SKI/@@download/ENCFF100SKI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF106ONT bed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF436WOY, ENCFF719VPI 6743993 ENCODE Processing Pipeline bea15d20df73181bfe5ebe57be4ea431 https://www.encodeproject.org/files/ENCFF106ONT/@@download/ENCFF106ONT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF303KHS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF100SKI 929064 ENCODE Processing Pipeline 49c485bd9f59c53ab786eb4f5e7c19a2 https://www.encodeproject.org/files/ENCFF303KHS/@@download/ENCFF303KHS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF439BPN bigBed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF106ONT 13628229 ENCODE Processing Pipeline b8fe1bdce51e2d2b2dc6b8d36de691d6 https://www.encodeproject.org/files/ENCFF439BPN/@@download/ENCFF439BPN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF817CFB fastq reads ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 1 ENCFF917CWI 2296684404 Michael Snyder, Stanford cd36c1ae8cf64195ebcce8492664825d SRA:SRR6214106 https://www.encodeproject.org/files/ENCFF817CFB/@@download/ENCFF817CFB.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF061OTP fastq reads ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 1 ENCFF151NBC 2966523349 Michael Snyder, Stanford 4e3d1b4c618e5ccee95694c5129caead SRA:SRR6214105 https://www.encodeproject.org/files/ENCFF061OTP/@@download/ENCFF061OTP.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF151NBC fastq reads ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 2 ENCFF061OTP 3647444162 Michael Snyder, Stanford f6cd34ee6e1dbdd14d9a7f098e1b823e SRA:SRR6214105 https://www.encodeproject.org/files/ENCFF151NBC/@@download/ENCFF151NBC.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF917CWI fastq reads ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 2 ENCFF817CFB 2866052433 Michael Snyder, Stanford d76e487b8b6cde556a4235eca2484ee6 SRA:SRR6214106 https://www.encodeproject.org/files/ENCFF917CWI/@@download/ENCFF917CWI.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF060UUX bam unfiltered alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF061OTP, ENCFF151NBC, ENCFF643CGH 6575974781 ENCODE Processing Pipeline 26f00131c5fdc288b0276418aa298324 https://www.encodeproject.org/files/ENCFF060UUX/@@download/ENCFF060UUX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF270ZZM bam unfiltered alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF643CGH, ENCFF817CFB, ENCFF917CWI 5285215730 ENCODE Processing Pipeline 71062eb6708d333b0ac92500cee3d052 https://www.encodeproject.org/files/ENCFF270ZZM/@@download/ENCFF270ZZM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF837VSV bam unfiltered alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF807MUK, ENCFF817CFB, ENCFF917CWI 5275560705 ENCODE Processing Pipeline 8eeb33836e477c6f0c35d3875ae11e17 https://www.encodeproject.org/files/ENCFF837VSV/@@download/ENCFF837VSV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF077FFT bam unfiltered alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF061OTP, ENCFF151NBC, ENCFF807MUK 6563733710 ENCODE Processing Pipeline cb0d4c1818c9a69bdba40de0da0dcb6d https://www.encodeproject.org/files/ENCFF077FFT/@@download/ENCFF077FFT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF949CYQ bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF643CGH, ENCFF817CFB, ENCFF917CWI 4205778981 ENCODE Processing Pipeline 2b49e843a9a6b4944471917449ad5440 https://www.encodeproject.org/files/ENCFF949CYQ/@@download/ENCFF949CYQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF014NCD bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF807MUK, ENCFF817CFB, ENCFF917CWI 4202306549 ENCODE Processing Pipeline 82cda216981df347c29ca58acc29d226 https://www.encodeproject.org/files/ENCFF014NCD/@@download/ENCFF014NCD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF212MCV bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF061OTP, ENCFF151NBC, ENCFF807MUK 5298424246 ENCODE Processing Pipeline 282a01ce98df1558767e1548d3e0dd78 https://www.encodeproject.org/files/ENCFF212MCV/@@download/ENCFF212MCV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF636XWN bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF061OTP, ENCFF151NBC, ENCFF643CGH 5303720381 ENCODE Processing Pipeline dd634450259e7a542ac21dbb96dc0fe4 https://www.encodeproject.org/files/ENCFF636XWN/@@download/ENCFF636XWN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF499TXY bigWig signal p-value ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF212MCV 1796118897 ENCODE Processing Pipeline abbfcc41cccd1e1f39cb3f5d942ae2cd https://www.encodeproject.org/files/ENCFF499TXY/@@download/ENCFF499TXY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF714FWY bigWig signal p-value ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF014NCD, ENCFF182WHU 1220347444 ENCODE Processing Pipeline c792054b1497c69371a22a1fc443a692 https://www.encodeproject.org/files/ENCFF714FWY/@@download/ENCFF714FWY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF127KKV bigWig fold change over control ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF636XWN, ENCFF810LLR 1801677468 ENCODE Processing Pipeline e0a1401d6432b260155adc8f8989db6e https://www.encodeproject.org/files/ENCFF127KKV/@@download/ENCFF127KKV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF149ZAL bigWig signal p-value ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF636XWN, ENCFF810LLR 1378521336 ENCODE Processing Pipeline fc2e9aa2f2cada4885ab0a2ff202965b https://www.encodeproject.org/files/ENCFF149ZAL/@@download/ENCFF149ZAL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF543FRM bigWig signal p-value ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF014NCD, ENCFF182WHU, ENCFF212MCV 1941652047 ENCODE Processing Pipeline f82adf6b58b4e7e429050b228069ced2 https://www.encodeproject.org/files/ENCFF543FRM/@@download/ENCFF543FRM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF428KYD bigWig signal p-value ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF636XWN, ENCFF810LLR, ENCFF949CYQ 1970317567 ENCODE Processing Pipeline 743fdf6b78bd6a5c27fac2ef97565ebf https://www.encodeproject.org/files/ENCFF428KYD/@@download/ENCFF428KYD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF478YAJ bigWig signal p-value ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF810LLR, ENCFF949CYQ 1433817118 ENCODE Processing Pipeline 566ce9d24eb28a4c7400f3c8e4850c79 https://www.encodeproject.org/files/ENCFF478YAJ/@@download/ENCFF478YAJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF603MCA bigWig fold change over control ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF810LLR, ENCFF949CYQ 1518874124 ENCODE Processing Pipeline 996e2e5378f51560255c9330b1c32dc7 https://www.encodeproject.org/files/ENCFF603MCA/@@download/ENCFF603MCA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF969JFO bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF212MCV 6816434 ENCODE Processing Pipeline 9297a582bb3420179db63f732866029e https://www.encodeproject.org/files/ENCFF969JFO/@@download/ENCFF969JFO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF618KNI bigWig fold change over control ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF212MCV 1750552964 ENCODE Processing Pipeline 46e66d9fa4169ff54cdb28272d73f33a https://www.encodeproject.org/files/ENCFF618KNI/@@download/ENCFF618KNI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF462BHV bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF014NCD, ENCFF182WHU 6675307 ENCODE Processing Pipeline 3f5f2429508539a08ee1c864413580e0 https://www.encodeproject.org/files/ENCFF462BHV/@@download/ENCFF462BHV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF084OVN bigBed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF248EEY 10974077 ENCODE Processing Pipeline 88e8bbedd8e15fc73941069e2860636d https://www.encodeproject.org/files/ENCFF084OVN/@@download/ENCFF084OVN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF542TVA bigWig fold change over control ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF014NCD, ENCFF182WHU 1517388606 ENCODE Processing Pipeline 14195f0f7f1934cad084be065796771b https://www.encodeproject.org/files/ENCFF542TVA/@@download/ENCFF542TVA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF918DGO bigWig fold change over control ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF014NCD, ENCFF182WHU, ENCFF212MCV 2250702027 ENCODE Processing Pipeline 694ff4c3d5f49c8f71d8932302cd1836 https://www.encodeproject.org/files/ENCFF918DGO/@@download/ENCFF918DGO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF518EVZ bigWig fold change over control ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF636XWN, ENCFF810LLR, ENCFF949CYQ 2281727682 ENCODE Processing Pipeline 23c0c7faff480a7da99bca926be718c7 https://www.encodeproject.org/files/ENCFF518EVZ/@@download/ENCFF518EVZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF682IHN bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF636XWN, ENCFF810LLR 6822913 ENCODE Processing Pipeline a26c82e694c4a1601cd44016d6ba43c7 https://www.encodeproject.org/files/ENCFF682IHN/@@download/ENCFF682IHN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF133ARA bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF636XWN, ENCFF810LLR, ENCFF949CYQ 7284475 ENCODE Processing Pipeline 045a508befe037a861c59473e6cc89c4 https://www.encodeproject.org/files/ENCFF133ARA/@@download/ENCFF133ARA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF383MEJ bed narrowPeak conservative idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF248EEY, ENCFF462BHV, ENCFF969JFO 43883 ENCODE Processing Pipeline 1731dfb6d7fed42acb04824ccc8f05e3 https://www.encodeproject.org/files/ENCFF383MEJ/@@download/ENCFF383MEJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF096NMU bigBed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF133ARA 10994249 ENCODE Processing Pipeline 0f27320f974f195d684bb3abfdc0be81 https://www.encodeproject.org/files/ENCFF096NMU/@@download/ENCFF096NMU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF123PHE bigBed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF462BHV 11182946 ENCODE Processing Pipeline 8ffd6f811cd879927c4ff1e926c1ab15 https://www.encodeproject.org/files/ENCFF123PHE/@@download/ENCFF123PHE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF441JMR bigBed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF682IHN 11026231 ENCODE Processing Pipeline d43a996e32d49baece80cbb34727a45e https://www.encodeproject.org/files/ENCFF441JMR/@@download/ENCFF441JMR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF147GIB bigBed narrowPeak conservative idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF600EIK 147088 ENCODE Processing Pipeline 4580fecd24482107989f01740ca535d9 https://www.encodeproject.org/files/ENCFF147GIB/@@download/ENCFF147GIB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF248EEY bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF014NCD, ENCFF182WHU, ENCFF212MCV 7275257 ENCODE Processing Pipeline 5f08d45137689031aef9bc68fde35c15 https://www.encodeproject.org/files/ENCFF248EEY/@@download/ENCFF248EEY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF300KUE bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF810LLR, ENCFF949CYQ 6680891 ENCODE Processing Pipeline 427293acb24db64d126208e8f1ebc1e7 https://www.encodeproject.org/files/ENCFF300KUE/@@download/ENCFF300KUE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF008HKN bigBed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF969JFO 11008807 ENCODE Processing Pipeline ad51b3c5be2db170d9f1fbcb94785646 https://www.encodeproject.org/files/ENCFF008HKN/@@download/ENCFF008HKN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF565BKQ bigBed narrowPeak conservative idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF383MEJ 121053 ENCODE Processing Pipeline c664b53d969735479937957610714d5b https://www.encodeproject.org/files/ENCFF565BKQ/@@download/ENCFF565BKQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF600EIK bed narrowPeak conservative idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF133ARA, ENCFF300KUE, ENCFF419RSJ, ENCFF682IHN 45224 ENCODE Processing Pipeline 8697830bb119a8e952d996227f54e51c https://www.encodeproject.org/files/ENCFF600EIK/@@download/ENCFF600EIK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF228OPI bigBed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF300KUE 11200525 ENCODE Processing Pipeline 6e1d80b53d255515c2e47cc5b3cee390 https://www.encodeproject.org/files/ENCFF228OPI/@@download/ENCFF228OPI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF023CNB bigBed narrowPeak optimal idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF960ZJT 194804 ENCODE Processing Pipeline 6a40614ac574ad89128c25c3e284c968 https://www.encodeproject.org/files/ENCFF023CNB/@@download/ENCFF023CNB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF901JRM bed narrowPeak optimal idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF248EEY, ENCFF462BHV, ENCFF969JFO 68814 ENCODE Processing Pipeline f12ce089c0b22e41abf68af12c139976 https://www.encodeproject.org/files/ENCFF901JRM/@@download/ENCFF901JRM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF031UFB bigBed narrowPeak optimal idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF901JRM 183949 ENCODE Processing Pipeline 9c6b527e85dd50af3d1b6527350e5c07 https://www.encodeproject.org/files/ENCFF031UFB/@@download/ENCFF031UFB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF960ZJT bed narrowPeak optimal idr thresholded peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF133ARA, ENCFF300KUE, ENCFF419RSJ, ENCFF682IHN 73704 ENCODE Processing Pipeline 7910e4f4c389d15d2e8101e077e783b8 https://www.encodeproject.org/files/ENCFF960ZJT/@@download/ENCFF960ZJT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF609XEG fastq reads ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF047GWH 2922126439 Michael Snyder, Stanford a4d71373ba23715ed3f1d84b4d0165a8 SRA:SRR6213274 https://www.encodeproject.org/files/ENCFF609XEG/@@download/ENCFF609XEG.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, moderate library complexity ENCFF734WRA fastq reads ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF600VBR 2927998681 Michael Snyder, Stanford 4b659e0e46fe28736e556696de8c33e6 SRA:SRR6213275 https://www.encodeproject.org/files/ENCFF734WRA/@@download/ENCFF734WRA.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, moderate library complexity ENCFF600VBR fastq reads ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF734WRA 3302201500 Michael Snyder, Stanford 4b59a26754f5af8ddd32b5343bec9d1c SRA:SRR6213275 https://www.encodeproject.org/files/ENCFF600VBR/@@download/ENCFF600VBR.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, moderate library complexity ENCFF047GWH fastq reads ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF609XEG 3361813500 Michael Snyder, Stanford a8558a6ff9640af1d0439b9712e27547 SRA:SRR6213274 https://www.encodeproject.org/files/ENCFF047GWH/@@download/ENCFF047GWH.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, moderate library complexity ENCFF151DSG bam unfiltered alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF047GWH, ENCFF609XEG, ENCFF807MUK 5638642671 ENCODE Processing Pipeline 660637868408c745de32b5027638efcd https://www.encodeproject.org/files/ENCFF151DSG/@@download/ENCFF151DSG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF042NBZ bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF047GWH, ENCFF609XEG, ENCFF807MUK 3019481770 ENCODE Processing Pipeline ca5c4bfa30561a6d71a9424b3460d308 https://www.encodeproject.org/files/ENCFF042NBZ/@@download/ENCFF042NBZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF983CUE bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF047GWH, ENCFF609XEG, ENCFF643CGH 3020319589 ENCODE Processing Pipeline 1b1020f983dab266f3bf91a685ea25f0 https://www.encodeproject.org/files/ENCFF983CUE/@@download/ENCFF983CUE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF233CSQ bam unfiltered alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF600VBR, ENCFF734WRA, ENCFF807MUK 5435281105 ENCODE Processing Pipeline a1fe69e1f66a524c447e165dc4597940 https://www.encodeproject.org/files/ENCFF233CSQ/@@download/ENCFF233CSQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF646UDC bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF600VBR, ENCFF734WRA, ENCFF807MUK 3230058249 ENCODE Processing Pipeline 0bab36797bc1fe89d38f819cae6e7dea https://www.encodeproject.org/files/ENCFF646UDC/@@download/ENCFF646UDC.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF477QAO bam unfiltered alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF047GWH, ENCFF609XEG, ENCFF643CGH 5642338068 ENCODE Processing Pipeline 847649c7d85f9f1b5f3419a3d59ce31c https://www.encodeproject.org/files/ENCFF477QAO/@@download/ENCFF477QAO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF912HMV bam unfiltered alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF600VBR, ENCFF643CGH, ENCFF734WRA 5434074766 ENCODE Processing Pipeline 52919354ab6a9c8f3ad1621214bc96bd https://www.encodeproject.org/files/ENCFF912HMV/@@download/ENCFF912HMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF119JZC bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF600VBR, ENCFF643CGH, ENCFF734WRA 3231143857 ENCODE Processing Pipeline e3f6a639bc23b893032585b100d5546b https://www.encodeproject.org/files/ENCFF119JZC/@@download/ENCFF119JZC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF102YGR bigWig fold change over control ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF983CUE 1362215845 ENCODE Processing Pipeline dd7bc521e5c577f834d976f029fac545 https://www.encodeproject.org/files/ENCFF102YGR/@@download/ENCFF102YGR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF077IAW bigWig fold change over control ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF119JZC, ENCFF191XYH, ENCFF746SKT 1481842118 ENCODE Processing Pipeline 280a153ab118a7df17f29d4ce9573f00 https://www.encodeproject.org/files/ENCFF077IAW/@@download/ENCFF077IAW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF419NLH bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF983CUE 6234783 ENCODE Processing Pipeline dfab0dd5e2029da3c4cfe788bfcf1e56 https://www.encodeproject.org/files/ENCFF419NLH/@@download/ENCFF419NLH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF701MTT bigBed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF685JOB 11579528 ENCODE Processing Pipeline 640d5776071c31f0a65ac790c598fc5c https://www.encodeproject.org/files/ENCFF701MTT/@@download/ENCFF701MTT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF588RVK bigBed narrowPeak optimal idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF761NKP 665676 ENCODE Processing Pipeline 3be905fbe7bb7d731af660698ef31211 https://www.encodeproject.org/files/ENCFF588RVK/@@download/ENCFF588RVK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF636YBB bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF042NBZ, ENCFF447KVS, ENCFF646UDC, ENCFF823USR 6979815 ENCODE Processing Pipeline ab50875a672b84dcde27f4fc3255fb52 https://www.encodeproject.org/files/ENCFF636YBB/@@download/ENCFF636YBB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF685JOB bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF119JZC, ENCFF191XYH, ENCFF746SKT 6432031 ENCODE Processing Pipeline f761062f99727c41a30577f531c55664 https://www.encodeproject.org/files/ENCFF685JOB/@@download/ENCFF685JOB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF246RSB bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF119JZC, ENCFF191XYH, ENCFF746SKT, ENCFF983CUE 6982902 ENCODE Processing Pipeline 7cb40a0d565b5bb65968aa91474ad844 https://www.encodeproject.org/files/ENCFF246RSB/@@download/ENCFF246RSB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF479PEX bed narrowPeak conservative idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF246RSB, ENCFF419NLH, ENCFF419RSJ, ENCFF685JOB 255185 ENCODE Processing Pipeline 0e0b34720e39fe63c09336565470c861 https://www.encodeproject.org/files/ENCFF479PEX/@@download/ENCFF479PEX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF166PTM bigBed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF636YBB 11436265 ENCODE Processing Pipeline a2a9845e2b5de5dbbb5068ffc6250dfb https://www.encodeproject.org/files/ENCFF166PTM/@@download/ENCFF166PTM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF536XBS bed narrowPeak conservative idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF357IME, ENCFF636YBB, ENCFF967VMV 254400 ENCODE Processing Pipeline b402ffe7b662e69355f8f60bee9411ee https://www.encodeproject.org/files/ENCFF536XBS/@@download/ENCFF536XBS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF096LRM bed narrowPeak optimal idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF357IME, ENCFF636YBB, ENCFF967VMV 337053 ENCODE Processing Pipeline feda79ce282349095e16b0b9427da1f4 https://www.encodeproject.org/files/ENCFF096LRM/@@download/ENCFF096LRM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF046VUF bigWig fold change over control ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF042NBZ, ENCFF447KVS, ENCFF646UDC, ENCFF823USR 2007795405 ENCODE Processing Pipeline fca6e21cf2d3ce8199af78d716a34496 https://www.encodeproject.org/files/ENCFF046VUF/@@download/ENCFF046VUF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF932YGQ bigBed narrowPeak conservative idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF536XBS 529732 ENCODE Processing Pipeline 69ddb1f8e2e723780e12b91c18a696c3 https://www.encodeproject.org/files/ENCFF932YGQ/@@download/ENCFF932YGQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF354TGM bigWig fold change over control ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF042NBZ, ENCFF447KVS, ENCFF823USR 1361759318 ENCODE Processing Pipeline b4945cd6047640f11751b5fa0734b572 https://www.encodeproject.org/files/ENCFF354TGM/@@download/ENCFF354TGM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF995BYW bigWig signal p-value ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF119JZC, ENCFF191XYH, ENCFF746SKT 1381100329 ENCODE Processing Pipeline d4a60691baa15e38723fe4950db3ee5b https://www.encodeproject.org/files/ENCFF995BYW/@@download/ENCFF995BYW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF714DLE bigWig signal p-value ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF646UDC, ENCFF823USR 1470255493 ENCODE Processing Pipeline e082ccfc7600495ccc42da82f402cb03 https://www.encodeproject.org/files/ENCFF714DLE/@@download/ENCFF714DLE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF313QJR bigWig signal p-value ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF119JZC, ENCFF191XYH, ENCFF746SKT, ENCFF983CUE 1598359085 ENCODE Processing Pipeline dd71550f233d3683fb75250cb9775e7c https://www.encodeproject.org/files/ENCFF313QJR/@@download/ENCFF313QJR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF415SYA bigWig fold change over control ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF119JZC, ENCFF191XYH, ENCFF746SKT, ENCFF983CUE 2030228165 ENCODE Processing Pipeline d2291c55e0f5d9f0a45637ff4d39e1ee https://www.encodeproject.org/files/ENCFF415SYA/@@download/ENCFF415SYA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF217POX bigBed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF419NLH 11656736 ENCODE Processing Pipeline 84b6c933bfe00ad38cb69fbf50da0a2e https://www.encodeproject.org/files/ENCFF217POX/@@download/ENCFF217POX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF967VMV bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF646UDC, ENCFF823USR 6432976 ENCODE Processing Pipeline 2518687ade1b98d33926dfcc893e41ad https://www.encodeproject.org/files/ENCFF967VMV/@@download/ENCFF967VMV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF110IQQ bigWig signal p-value ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF983CUE 1302584144 ENCODE Processing Pipeline 9d15f652ad9eecda1eda7859809f7a58 https://www.encodeproject.org/files/ENCFF110IQQ/@@download/ENCFF110IQQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF371UAW bigWig signal p-value ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF042NBZ, ENCFF447KVS, ENCFF646UDC, ENCFF823USR 1583395447 ENCODE Processing Pipeline 3e551fc70527dbf99a5f296487729d49 https://www.encodeproject.org/files/ENCFF371UAW/@@download/ENCFF371UAW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF316AUX bigBed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF246RSB 11461551 ENCODE Processing Pipeline 499cec055096b2eae1646da6bb736fc6 https://www.encodeproject.org/files/ENCFF316AUX/@@download/ENCFF316AUX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF563JNI bigBed narrowPeak conservative idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF479PEX 532950 ENCODE Processing Pipeline 13bddff4ca0419da3a5e42c8189721d7 https://www.encodeproject.org/files/ENCFF563JNI/@@download/ENCFF563JNI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF761NKP bed narrowPeak optimal idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF246RSB, ENCFF419NLH, ENCFF419RSJ, ENCFF685JOB 345852 ENCODE Processing Pipeline 0a0902f8a15493096c312fd90ad3b949 https://www.encodeproject.org/files/ENCFF761NKP/@@download/ENCFF761NKP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF497CWN bigBed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF357IME 11636989 ENCODE Processing Pipeline d9a1abf90832f0a231abbe3b09e66b84 https://www.encodeproject.org/files/ENCFF497CWN/@@download/ENCFF497CWN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF414WCZ bigWig signal p-value ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF042NBZ, ENCFF447KVS, ENCFF823USR 1387770397 ENCODE Processing Pipeline d383babb8273679f2d1f4887d3a60801 https://www.encodeproject.org/files/ENCFF414WCZ/@@download/ENCFF414WCZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF776ZAF bigWig fold change over control ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF646UDC, ENCFF823USR 1479242264 ENCODE Processing Pipeline 2c386b74cde9574c86104aa10cddf316 https://www.encodeproject.org/files/ENCFF776ZAF/@@download/ENCFF776ZAF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF357IME bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF042NBZ, ENCFF447KVS, ENCFF823USR 6233745 ENCODE Processing Pipeline 40ae888cd5c8e4bbba47e54bea6bf0de https://www.encodeproject.org/files/ENCFF357IME/@@download/ENCFF357IME.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF468JSX bigBed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF967VMV 11561254 ENCODE Processing Pipeline da8a5a68722169f8012c0b077d03af63 https://www.encodeproject.org/files/ENCFF468JSX/@@download/ENCFF468JSX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF859UYN bigBed narrowPeak optimal idr thresholded peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF096LRM 649842 ENCODE Processing Pipeline de079b11c82321940c9d77f5aeef9971 https://www.encodeproject.org/files/ENCFF859UYN/@@download/ENCFF859UYN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF637JXP fastq reads ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF107YXM 2528528679 Michael Snyder, Stanford ee92204a8dc40bdf5cb543bac0f54f1f SRA:SRR6214124 https://www.encodeproject.org/files/ENCFF637JXP/@@download/ENCFF637JXP.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released borderline replicate concordance ENCFF107YXM fastq reads ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF637JXP 2976023818 Michael Snyder, Stanford f028dcd66d5d357cc3ad0ff0336a75f4 SRA:SRR6214124 https://www.encodeproject.org/files/ENCFF107YXM/@@download/ENCFF107YXM.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released borderline replicate concordance ENCFF985OFU fastq reads ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF466FAG 2744872908 Michael Snyder, Stanford 9c7b95186610158db5e4d2118d134275 SRA:SRR6214123 https://www.encodeproject.org/files/ENCFF985OFU/@@download/ENCFF985OFU.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released borderline replicate concordance ENCFF466FAG fastq reads ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF985OFU 3384346235 Michael Snyder, Stanford 9eb2dfa2364a2958c967661e574f0af9 SRA:SRR6214123 https://www.encodeproject.org/files/ENCFF466FAG/@@download/ENCFF466FAG.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released borderline replicate concordance ENCFF227RJY bam unfiltered alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF107YXM, ENCFF637JXP, ENCFF807MUK 5419882404 ENCODE Processing Pipeline 4042f024ef19feb7cee3a436a9e810e9 https://www.encodeproject.org/files/ENCFF227RJY/@@download/ENCFF227RJY.bam hg19 released borderline replicate concordance ENCFF624OSM bam unfiltered alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF107YXM, ENCFF637JXP, ENCFF643CGH 5433442112 ENCODE Processing Pipeline 06c8006bd54b877584de39e45c88f1ef https://www.encodeproject.org/files/ENCFF624OSM/@@download/ENCFF624OSM.bam GRCh38 released borderline replicate concordance ENCFF830BJO bam unfiltered alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF466FAG, ENCFF643CGH, ENCFF985OFU 6055627547 ENCODE Processing Pipeline 68e20f18e7c76a1f180498828bc96e5a https://www.encodeproject.org/files/ENCFF830BJO/@@download/ENCFF830BJO.bam GRCh38 released borderline replicate concordance ENCFF781LJI bam unfiltered alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF466FAG, ENCFF807MUK, ENCFF985OFU 6039834182 ENCODE Processing Pipeline 2639d688410370d97ef79219a97c08fe https://www.encodeproject.org/files/ENCFF781LJI/@@download/ENCFF781LJI.bam hg19 released borderline replicate concordance ENCFF531GWB bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF107YXM, ENCFF637JXP, ENCFF807MUK 3936369430 ENCODE Processing Pipeline 0f15c2130c146e0393ce1c49081c3cc6 https://www.encodeproject.org/files/ENCFF531GWB/@@download/ENCFF531GWB.bam hg19 released borderline replicate concordance ENCFF139OUQ bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF466FAG, ENCFF807MUK, ENCFF985OFU 4418562283 ENCODE Processing Pipeline 011d7569f7da83735fda2c86f376ca03 https://www.encodeproject.org/files/ENCFF139OUQ/@@download/ENCFF139OUQ.bam hg19 released borderline replicate concordance ENCFF224ODF bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF107YXM, ENCFF637JXP, ENCFF643CGH 3943976327 ENCODE Processing Pipeline b244c3f0b5fc04dfe3e5f27d6a162888 https://www.encodeproject.org/files/ENCFF224ODF/@@download/ENCFF224ODF.bam GRCh38 released borderline replicate concordance ENCFF675HLZ bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF466FAG, ENCFF643CGH, ENCFF985OFU 4427425388 ENCODE Processing Pipeline 10f66f8b1dff682c2c3d1b7514d19037 https://www.encodeproject.org/files/ENCFF675HLZ/@@download/ENCFF675HLZ.bam GRCh38 released borderline replicate concordance ENCFF759ADM bigWig signal p-value ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF224ODF, ENCFF475DWJ, ENCFF621RXC 1957903815 ENCODE Processing Pipeline 0e6a8122a00252c3d24f7b26493e1e97 https://www.encodeproject.org/files/ENCFF759ADM/@@download/ENCFF759ADM.bigWig GRCh38 released borderline replicate concordance ENCFF894IOS bigWig fold change over control ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224ODF, ENCFF475DWJ, ENCFF621RXC, ENCFF675HLZ 2518768012 ENCODE Processing Pipeline bbcdb7913f1f3ef45ce4fd4d9f09c30c https://www.encodeproject.org/files/ENCFF894IOS/@@download/ENCFF894IOS.bigWig GRCh38 released borderline replicate concordance ENCFF297IUH bigWig fold change over control ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF475DWJ, ENCFF621RXC, ENCFF675HLZ 1908700887 ENCODE Processing Pipeline 5a46af641c045581762d6977d87a2300 https://www.encodeproject.org/files/ENCFF297IUH/@@download/ENCFF297IUH.bigWig GRCh38 released borderline replicate concordance ENCFF744YUV bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF224ODF, ENCFF475DWJ, ENCFF621RXC 6323157 ENCODE Processing Pipeline 6b6078c9080071bca5870650df148b9d https://www.encodeproject.org/files/ENCFF744YUV/@@download/ENCFF744YUV.bed.gz GRCh38 released borderline replicate concordance ENCFF434VBV bigBed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF744YUV 11753406 ENCODE Processing Pipeline db1cedf557b15b1cf4afbc86287256b0 https://www.encodeproject.org/files/ENCFF434VBV/@@download/ENCFF434VBV.bigBed GRCh38 released borderline replicate concordance ENCFF626KXG bigBed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF189QSX 11529715 ENCODE Processing Pipeline 9d554804e21656e5899377c41fda0f50 https://www.encodeproject.org/files/ENCFF626KXG/@@download/ENCFF626KXG.bigBed GRCh38 released borderline replicate concordance ENCFF210HAA bed narrowPeak optimal idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF189QSX, ENCFF419RSJ, ENCFF628ZYN, ENCFF744YUV 26728 ENCODE Processing Pipeline 58276e6a4bbfd9e3ca8e7a07240c6f81 https://www.encodeproject.org/files/ENCFF210HAA/@@download/ENCFF210HAA.bed.gz GRCh38 released borderline replicate concordance ENCFF142ECX bigBed narrowPeak optimal idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF210HAA 110970 ENCODE Processing Pipeline 7f6e33021b56a4175ff5e4295aca9a78 https://www.encodeproject.org/files/ENCFF142ECX/@@download/ENCFF142ECX.bigBed GRCh38 released borderline replicate concordance ENCFF863WUI bigWig signal p-value ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 2008208315 ENCODE Processing Pipeline 996ce68fe295acca5637953630e0ac04 https://www.encodeproject.org/files/ENCFF863WUI/@@download/ENCFF863WUI.bigWig hg19 released borderline replicate concordance ENCFF755URS bed narrowPeak conservative idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF309BHZ, ENCFF819JTY, ENCFF854SVR 13436 ENCODE Processing Pipeline c887a040926dbbf851013285b7467fce https://www.encodeproject.org/files/ENCFF755URS/@@download/ENCFF755URS.bed.gz hg19 released borderline replicate concordance ENCFF628ZYN bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF475DWJ, ENCFF621RXC, ENCFF675HLZ 6394545 ENCODE Processing Pipeline 50c53843c5836074acdc634f30733007 https://www.encodeproject.org/files/ENCFF628ZYN/@@download/ENCFF628ZYN.bed.gz GRCh38 released borderline replicate concordance ENCFF680QSD bigBed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF628ZYN 11802503 ENCODE Processing Pipeline 50bc8cc70d599846f36e27563a072091 https://www.encodeproject.org/files/ENCFF680QSD/@@download/ENCFF680QSD.bigBed GRCh38 released borderline replicate concordance ENCFF309BHZ bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF139OUQ, ENCFF172XZA, ENCFF843IXX 6387549 ENCODE Processing Pipeline d3abd3a0e8ab563150f2e9a0aa3a7168 https://www.encodeproject.org/files/ENCFF309BHZ/@@download/ENCFF309BHZ.bed.gz hg19 released borderline replicate concordance ENCFF903ZAY bigWig signal p-value ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF475DWJ, ENCFF621RXC, ENCFF675HLZ 1970240516 ENCODE Processing Pipeline b39b0bbcfb48e40cc053a2770cd1bed0 https://www.encodeproject.org/files/ENCFF903ZAY/@@download/ENCFF903ZAY.bigWig GRCh38 released borderline replicate concordance ENCFF724HCR bigWig signal p-value ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF139OUQ, ENCFF172XZA, ENCFF843IXX 2155170932 ENCODE Processing Pipeline 0c252b3fb620fa72b4781c3d267fc827 https://www.encodeproject.org/files/ENCFF724HCR/@@download/ENCFF724HCR.bigWig hg19 released borderline replicate concordance ENCFF147HBD bigWig fold change over control ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 1860602172 ENCODE Processing Pipeline 6ef862e5eecb13fa5d0d5348bb3bcc8b https://www.encodeproject.org/files/ENCFF147HBD/@@download/ENCFF147HBD.bigWig hg19 released borderline replicate concordance ENCFF816FIC bigWig fold change over control ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF139OUQ, ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 2572238070 ENCODE Processing Pipeline 60257ad55e43ef13c8659aff650c7f70 https://www.encodeproject.org/files/ENCFF816FIC/@@download/ENCFF816FIC.bigWig hg19 released borderline replicate concordance ENCFF652OAD bigBed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF854SVR 11505839 ENCODE Processing Pipeline b2086e9e23cc1c921a1fa80937a60fb3 https://www.encodeproject.org/files/ENCFF652OAD/@@download/ENCFF652OAD.bigBed hg19 released borderline replicate concordance ENCFF743GXH bed narrowPeak optimal idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF309BHZ, ENCFF819JTY, ENCFF854SVR 23579 ENCODE Processing Pipeline 7e76e0b508be4d32937a460c8f4a0e13 https://www.encodeproject.org/files/ENCFF743GXH/@@download/ENCFF743GXH.bed.gz hg19 released borderline replicate concordance ENCFF223VHR bed narrowPeak conservative idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF189QSX, ENCFF419RSJ, ENCFF628ZYN, ENCFF744YUV 16683 ENCODE Processing Pipeline 3a2d639749424ed904a7c33f5fd65544 https://www.encodeproject.org/files/ENCFF223VHR/@@download/ENCFF223VHR.bed.gz GRCh38 released borderline replicate concordance ENCFF894QGY bigBed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF309BHZ 11772470 ENCODE Processing Pipeline c05be6a7880a2506b0e600812ab887eb https://www.encodeproject.org/files/ENCFF894QGY/@@download/ENCFF894QGY.bigBed hg19 released borderline replicate concordance ENCFF046CNM bigWig signal p-value ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224ODF, ENCFF475DWJ, ENCFF621RXC, ENCFF675HLZ 2342264995 ENCODE Processing Pipeline c4cee51a53a4492c3f78d79c859a3b26 https://www.encodeproject.org/files/ENCFF046CNM/@@download/ENCFF046CNM.bigWig GRCh38 released borderline replicate concordance ENCFF007HFA bigWig fold change over control ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF224ODF, ENCFF475DWJ, ENCFF621RXC 1875874720 ENCODE Processing Pipeline 390bc8e690785d0c27080995eadf0b82 https://www.encodeproject.org/files/ENCFF007HFA/@@download/ENCFF007HFA.bigWig GRCh38 released borderline replicate concordance ENCFF189QSX bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF224ODF, ENCFF475DWJ, ENCFF621RXC, ENCFF675HLZ 6954400 ENCODE Processing Pipeline f05491a5f6cbb974f81371071a1ab1f7 https://www.encodeproject.org/files/ENCFF189QSX/@@download/ENCFF189QSX.bed.gz GRCh38 released borderline replicate concordance ENCFF005KDP bigBed narrowPeak conservative idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF223VHR 93823 ENCODE Processing Pipeline 2f939beb57c5db6feb462c99b66b33b7 https://www.encodeproject.org/files/ENCFF005KDP/@@download/ENCFF005KDP.bigBed GRCh38 released borderline replicate concordance ENCFF701MDQ bigWig signal p-value ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF139OUQ, ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 2310849662 ENCODE Processing Pipeline ad3adcc6f03be9c31fe682570d1d666b https://www.encodeproject.org/files/ENCFF701MDQ/@@download/ENCFF701MDQ.bigWig hg19 released borderline replicate concordance ENCFF819JTY bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 6313755 ENCODE Processing Pipeline f5500d43b4af2fe1d7cc7996277f0915 https://www.encodeproject.org/files/ENCFF819JTY/@@download/ENCFF819JTY.bed.gz hg19 released borderline replicate concordance ENCFF824QRF bigWig fold change over control ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF139OUQ, ENCFF172XZA, ENCFF843IXX 1939722244 ENCODE Processing Pipeline 3fbd202cce95b6964c5a6ce46d24b21a https://www.encodeproject.org/files/ENCFF824QRF/@@download/ENCFF824QRF.bigWig hg19 released borderline replicate concordance ENCFF273AOD bigBed narrowPeak conservative idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF755URS 73382 ENCODE Processing Pipeline dd3392b41ae5ed941ccbb4b0fd7ba797 https://www.encodeproject.org/files/ENCFF273AOD/@@download/ENCFF273AOD.bigBed hg19 released borderline replicate concordance ENCFF854SVR bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF139OUQ, ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 6943297 ENCODE Processing Pipeline 6caf121ad258f5cebf08323bdaf32090 https://www.encodeproject.org/files/ENCFF854SVR/@@download/ENCFF854SVR.bed.gz hg19 released borderline replicate concordance ENCFF475RXF bigBed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF819JTY 11724937 ENCODE Processing Pipeline c5d4e5587fea1499135d879b4b6f4e50 https://www.encodeproject.org/files/ENCFF475RXF/@@download/ENCFF475RXF.bigBed hg19 released borderline replicate concordance ENCFF292LJF bigBed narrowPeak optimal idr thresholded peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF743GXH 87681 ENCODE Processing Pipeline 4d9f7d1093e75cf16838c86752e165e6 https://www.encodeproject.org/files/ENCFF292LJF/@@download/ENCFF292LJF.bigBed hg19 released borderline replicate concordance ENCFF119QES fastq reads ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 1 ENCFF823BPQ 2464482057 Michael Snyder, Stanford f33713775c97ccd7f86744d9a205cc08 SRA:SRR6214044 https://www.encodeproject.org/files/ENCFF119QES/@@download/ENCFF119QES.fastq.gz Illumina HiSeq 4000 /files/ENCFF867DWD/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF823BPQ fastq reads ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 2 ENCFF119QES 2780355561 Michael Snyder, Stanford 6ee782c0530cc45df45965b012853432 SRA:SRR6214044 https://www.encodeproject.org/files/ENCFF823BPQ/@@download/ENCFF823BPQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF586WPQ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728XUW bam unfiltered alignments ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF119QES, ENCFF643CGH, ENCFF823BPQ 4599059542 ENCODE Processing Pipeline ed8cf4c2e90ace50f2257c386830e19a https://www.encodeproject.org/files/ENCFF728XUW/@@download/ENCFF728XUW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF951MLQ bam unfiltered alignments ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF119QES, ENCFF807MUK, ENCFF823BPQ 4599051963 ENCODE Processing Pipeline a1cede6cc7c0f143238ecf5f84e5f682 https://www.encodeproject.org/files/ENCFF951MLQ/@@download/ENCFF951MLQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF446IQQ bam alignments ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF119QES, ENCFF643CGH, ENCFF823BPQ 3149585976 ENCODE Processing Pipeline 1d2d98566aed33855544fa515afa88ff https://www.encodeproject.org/files/ENCFF446IQQ/@@download/ENCFF446IQQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF234PLD bam alignments ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF119QES, ENCFF807MUK, ENCFF823BPQ 3146191377 ENCODE Processing Pipeline e79a599400a622d7d7376b15ce1df81b https://www.encodeproject.org/files/ENCFF234PLD/@@download/ENCFF234PLD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF723RZG bigWig signal p-value ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF068ZJF, ENCFF234PLD 1036871297 ENCODE Processing Pipeline 733b121695bc77d504f1a6bffa8e5dcd https://www.encodeproject.org/files/ENCFF723RZG/@@download/ENCFF723RZG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF835QNQ bigWig fold change over control ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF068ZJF, ENCFF234PLD 979545045 ENCODE Processing Pipeline bc1f82cbe2c5f69d891375bb7056a8b8 https://www.encodeproject.org/files/ENCFF835QNQ/@@download/ENCFF835QNQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF591HNR bed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF068ZJF, ENCFF234PLD 6061262 ENCODE Processing Pipeline 6efa100e6cc623afc54dcf99f03b75f8 https://www.encodeproject.org/files/ENCFF591HNR/@@download/ENCFF591HNR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF403OHK bigBed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF591HNR 11686529 ENCODE Processing Pipeline fe62bf1c3c17cc3bd1ecfee1f77c49c7 https://www.encodeproject.org/files/ENCFF403OHK/@@download/ENCFF403OHK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF846FIG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF591HNR 698458 ENCODE Processing Pipeline 542355891e18c06dd3f4d3ea87b7fce7 https://www.encodeproject.org/files/ENCFF846FIG/@@download/ENCFF846FIG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF866LIH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF846FIG 1230276 ENCODE Processing Pipeline f3dfbd1a7f07783a9811feff53e36634 https://www.encodeproject.org/files/ENCFF866LIH/@@download/ENCFF866LIH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF254DXG bigBed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF634IMR 11686482 ENCODE Processing Pipeline 8890818a2ed307e10afb56e340bc3f3f https://www.encodeproject.org/files/ENCFF254DXG/@@download/ENCFF254DXG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF406TZC bigWig signal p-value ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF249KIQ, ENCFF446IQQ 1036296937 ENCODE Processing Pipeline 0214a875adb99ce5f14333522fda5291 https://www.encodeproject.org/files/ENCFF406TZC/@@download/ENCFF406TZC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF242LSD bigWig fold change over control ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF249KIQ, ENCFF446IQQ 981530142 ENCODE Processing Pipeline 17fac82652d499622672b0d6850c7383 https://www.encodeproject.org/files/ENCFF242LSD/@@download/ENCFF242LSD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF634IMR bed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF249KIQ, ENCFF446IQQ 6048556 ENCODE Processing Pipeline 50538ba249b0202df8549477ab836395 https://www.encodeproject.org/files/ENCFF634IMR/@@download/ENCFF634IMR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF298KEG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF142JXX 1221756 ENCODE Processing Pipeline c6fc192e63b9ee899e00849ef1cc92bc https://www.encodeproject.org/files/ENCFF298KEG/@@download/ENCFF298KEG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF142JXX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF419RSJ, ENCFF634IMR 691566 ENCODE Processing Pipeline 1e56ae934370b55ec2add3ffaa87f040 https://www.encodeproject.org/files/ENCFF142JXX/@@download/ENCFF142JXX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF467JYT fastq reads ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF351KDO 1709968737 Michael Snyder, Stanford 7e7add73427be67b456a857a1da086f1 https://www.encodeproject.org/files/ENCFF467JYT/@@download/ENCFF467JYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF231JUU/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF351KDO fastq reads ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF467JYT 1678561854 Michael Snyder, Stanford 149c9c42073ed3eedfc66afea89092f6 https://www.encodeproject.org/files/ENCFF351KDO/@@download/ENCFF351KDO.fastq.gz Illumina HiSeq 2000 /files/ENCFF432BFB/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF961OUB bam alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF351KDO, ENCFF467JYT, ENCFF807MUK 2362910148 ENCODE Processing Pipeline adf62929f3873336a9cea3ec5c3107d5 https://www.encodeproject.org/files/ENCFF961OUB/@@download/ENCFF961OUB.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF014FJF fastq reads ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF655EPI 4876322163 Michael Snyder, Stanford c0528d317609587331f28d1cfc204dcc https://www.encodeproject.org/files/ENCFF014FJF/@@download/ENCFF014FJF.fastq.gz Illumina HiSeq 2000 /files/ENCFF432BFB/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF655EPI fastq reads ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF014FJF 4942366466 Michael Snyder, Stanford 442446a02f068068bdb7da62eabc27d3 https://www.encodeproject.org/files/ENCFF655EPI/@@download/ENCFF655EPI.fastq.gz Illumina HiSeq 2000 /files/ENCFF231JUU/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF954MQJ bam unfiltered alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF014FJF, ENCFF351KDO, ENCFF467JYT, ENCFF643CGH, ENCFF655EPI 11084955163 ENCODE Processing Pipeline a474726f241ed64dbe65b7dcba359d95 https://www.encodeproject.org/files/ENCFF954MQJ/@@download/ENCFF954MQJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF954DRC bam unfiltered alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF014FJF, ENCFF351KDO, ENCFF467JYT, ENCFF655EPI, ENCFF807MUK 11096614353 ENCODE Processing Pipeline 466821e792dcc039a1c8a4e88769978e https://www.encodeproject.org/files/ENCFF954DRC/@@download/ENCFF954DRC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF314JRE bam alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF014FJF, ENCFF351KDO, ENCFF467JYT, ENCFF643CGH, ENCFF655EPI 4571503923 ENCODE Processing Pipeline d7f2eb74798dba27c83131bc2a662eb8 https://www.encodeproject.org/files/ENCFF314JRE/@@download/ENCFF314JRE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF459EXC bam alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF014FJF, ENCFF351KDO, ENCFF467JYT, ENCFF655EPI, ENCFF807MUK 4569259174 ENCODE Processing Pipeline c332c83d175d5d97c82a89465e4a6b77 https://www.encodeproject.org/files/ENCFF459EXC/@@download/ENCFF459EXC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF215OIS fastq reads ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 592551255 Xiang-Dong Fu, UCSD 511bf6dece20370ec458d7110a3fc2ef SRA:SRR6213555 https://www.encodeproject.org/files/ENCFF215OIS/@@download/ENCFF215OIS.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth ENCFF816NNH fastq reads ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 708004340 Xiang-Dong Fu, UCSD 56ffd359551df0071cd28505a28f36a7 SRA:SRR6213554 https://www.encodeproject.org/files/ENCFF816NNH/@@download/ENCFF816NNH.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF199NEL bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF215OIS, ENCFF643CGH 432823855 ENCODE Processing Pipeline 59af9cbdbafe8a9d24ddddefc1b311d1 https://www.encodeproject.org/files/ENCFF199NEL/@@download/ENCFF199NEL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF378VHQ bam unfiltered alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF215OIS, ENCFF643CGH 791004754 ENCODE Processing Pipeline bd64d959dbf89389d485e3149cb9d6ab https://www.encodeproject.org/files/ENCFF378VHQ/@@download/ENCFF378VHQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF022DFQ bam unfiltered alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF215OIS, ENCFF807MUK 786980195 ENCODE Processing Pipeline 433b9631a62d9c3d1c1743ae7a59fe30 https://www.encodeproject.org/files/ENCFF022DFQ/@@download/ENCFF022DFQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF065JBC bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF215OIS, ENCFF807MUK 433443269 ENCODE Processing Pipeline fa5955ec2f4d30092dd172f15d78158c https://www.encodeproject.org/files/ENCFF065JBC/@@download/ENCFF065JBC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF128DCK bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF816NNH 508942613 ENCODE Processing Pipeline c579df0fa149cd51193ed4c7d53685f8 https://www.encodeproject.org/files/ENCFF128DCK/@@download/ENCFF128DCK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF349ZCH bam unfiltered alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF816NNH 939071481 ENCODE Processing Pipeline 940069a5bb479e453cfd8b3c6c203630 https://www.encodeproject.org/files/ENCFF349ZCH/@@download/ENCFF349ZCH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF418SGE bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF816NNH 508278358 ENCODE Processing Pipeline 32d8d0f82eceb4439515ab034a8dd2c4 https://www.encodeproject.org/files/ENCFF418SGE/@@download/ENCFF418SGE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF287HTO bam unfiltered alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF816NNH 944903926 ENCODE Processing Pipeline 4d29a6f7dde5f4a1a8362b1a64b267d2 https://www.encodeproject.org/files/ENCFF287HTO/@@download/ENCFF287HTO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF187SKG bigWig signal p-value ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF199NEL, ENCFF253UKR 485865836 ENCODE Processing Pipeline a77eea21d895e41317fd8027973c2d7e https://www.encodeproject.org/files/ENCFF187SKG/@@download/ENCFF187SKG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF766LRM bigWig fold change over control ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF199NEL, ENCFF253UKR 274405643 ENCODE Processing Pipeline 322efbb1451e23727426a3a0e011cc63 https://www.encodeproject.org/files/ENCFF766LRM/@@download/ENCFF766LRM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF633ADO bigWig signal p-value ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF418SGE 546992910 ENCODE Processing Pipeline 4719740a3bd0caf395dd6dcf8811b469 https://www.encodeproject.org/files/ENCFF633ADO/@@download/ENCFF633ADO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF122RRV bigWig signal p-value ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF199NEL, ENCFF253UKR, ENCFF279QEN, ENCFF418SGE 932856458 ENCODE Processing Pipeline 0eacd8caad6af13cfa05385c62e9890b https://www.encodeproject.org/files/ENCFF122RRV/@@download/ENCFF122RRV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF967OKU bigWig fold change over control ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF199NEL, ENCFF253UKR, ENCFF279QEN, ENCFF418SGE 717459591 ENCODE Processing Pipeline 028c4be144a0651f70add3ba5a772f75 https://www.encodeproject.org/files/ENCFF967OKU/@@download/ENCFF967OKU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF659IUJ bigWig fold change over control ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF418SGE 335484592 ENCODE Processing Pipeline a8e6e786e19dd970650be3a5e5706ed4 https://www.encodeproject.org/files/ENCFF659IUJ/@@download/ENCFF659IUJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF092HMG bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF418SGE 5196878 ENCODE Processing Pipeline fdedb53433543610d9f47ec28eeba205 https://www.encodeproject.org/files/ENCFF092HMG/@@download/ENCFF092HMG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF456BDR bigBed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF092HMG 13138217 ENCODE Processing Pipeline b49f8a36c3a07bc1ef4bcee590165c52 https://www.encodeproject.org/files/ENCFF456BDR/@@download/ENCFF456BDR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF617WKV bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF199NEL, ENCFF253UKR 4992788 ENCODE Processing Pipeline b4a4f94681de400ccec9a2a6baeb8773 https://www.encodeproject.org/files/ENCFF617WKV/@@download/ENCFF617WKV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF660LGC bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF199NEL, ENCFF253UKR, ENCFF279QEN, ENCFF418SGE 6480686 ENCODE Processing Pipeline 887d148c2067c862218ac14dc14f5d70 https://www.encodeproject.org/files/ENCFF660LGC/@@download/ENCFF660LGC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF433KGK bed narrowPeak conservative idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF092HMG, ENCFF419RSJ, ENCFF617WKV, ENCFF660LGC 109921 ENCODE Processing Pipeline 9000283013a0cb800f43add676f5683b https://www.encodeproject.org/files/ENCFF433KGK/@@download/ENCFF433KGK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF573BUV bigBed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF617WKV 12878896 ENCODE Processing Pipeline 64b6751971bb328ba15a81b8fc5e3f38 https://www.encodeproject.org/files/ENCFF573BUV/@@download/ENCFF573BUV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF436FGZ bigBed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF660LGC 13320963 ENCODE Processing Pipeline 48744eb79ddcf2e24b0be89e966dc936 https://www.encodeproject.org/files/ENCFF436FGZ/@@download/ENCFF436FGZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF330RTC bigBed narrowPeak conservative idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF433KGK 250584 ENCODE Processing Pipeline 1c279ffcfd42b808e9662412f6d3104e https://www.encodeproject.org/files/ENCFF330RTC/@@download/ENCFF330RTC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF656MNI bigBed narrowPeak optimal idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF599TWF 314349 ENCODE Processing Pipeline d763b02b3b8bed82a42af97e8e85762a https://www.encodeproject.org/files/ENCFF656MNI/@@download/ENCFF656MNI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF599TWF bed narrowPeak optimal idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF092HMG, ENCFF419RSJ, ENCFF617WKV, ENCFF660LGC 119941 ENCODE Processing Pipeline de595a5cc6b307c2c604c16391fa2265 https://www.encodeproject.org/files/ENCFF599TWF/@@download/ENCFF599TWF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF366ELK bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF128DCK, ENCFF578XGS 5210735 ENCODE Processing Pipeline 1ee7a77fbc3276d097af1ec01e875a62 https://www.encodeproject.org/files/ENCFF366ELK/@@download/ENCFF366ELK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF450JNX bigBed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF266MOP 12942979 ENCODE Processing Pipeline 730cb4efcf2c0798cdf7d276d377732f https://www.encodeproject.org/files/ENCFF450JNX/@@download/ENCFF450JNX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF069LKD bigBed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF366ELK 13111849 ENCODE Processing Pipeline 0fe633dffb7d64bfb175c29a9cde1ebd https://www.encodeproject.org/files/ENCFF069LKD/@@download/ENCFF069LKD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF188YUB bigWig signal p-value ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF065JBC, ENCFF375WCZ 402806687 ENCODE Processing Pipeline 0f0a4ed1d7eda1ad030d3672e1a56356 https://www.encodeproject.org/files/ENCFF188YUB/@@download/ENCFF188YUB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF688SFG bigWig fold change over control ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF065JBC, ENCFF375WCZ 264178212 ENCODE Processing Pipeline f8b593984d0b554b1bc23bf4db3dcd7e https://www.encodeproject.org/files/ENCFF688SFG/@@download/ENCFF688SFG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF362KTZ bigWig signal p-value ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF128DCK, ENCFF578XGS 538483108 ENCODE Processing Pipeline 15297a8758a7a82ec006f241872be102 https://www.encodeproject.org/files/ENCFF362KTZ/@@download/ENCFF362KTZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF597MAC bigBed narrowPeak optimal idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF095TYO 250735 ENCODE Processing Pipeline 9b57d776b76e8f590edf7dbb85772963 https://www.encodeproject.org/files/ENCFF597MAC/@@download/ENCFF597MAC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF413SCT bigWig fold change over control ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF128DCK, ENCFF578XGS 336616974 ENCODE Processing Pipeline 2f7a06eac579001aef812caef2d0646d https://www.encodeproject.org/files/ENCFF413SCT/@@download/ENCFF413SCT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF892VRK bigWig fold change over control ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF065JBC, ENCFF128DCK, ENCFF375WCZ, ENCFF578XGS 710967381 ENCODE Processing Pipeline 59af9d15d7d6a8ba50bd2c560e788dde https://www.encodeproject.org/files/ENCFF892VRK/@@download/ENCFF892VRK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF266MOP bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF065JBC, ENCFF375WCZ 5105451 ENCODE Processing Pipeline b4a399e5a8d27927a943d854366ed12e https://www.encodeproject.org/files/ENCFF266MOP/@@download/ENCFF266MOP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF224MFN bed narrowPeak conservative idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF033KIA, ENCFF266MOP, ENCFF366ELK 101777 ENCODE Processing Pipeline a4a9d49f1dac5724486d9a2fdd2038ca https://www.encodeproject.org/files/ENCFF224MFN/@@download/ENCFF224MFN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF983SCG bigWig signal p-value ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF065JBC, ENCFF128DCK, ENCFF375WCZ, ENCFF578XGS 772462637 ENCODE Processing Pipeline c15aebf0eefaa50e2cc9784bd3c0bd24 https://www.encodeproject.org/files/ENCFF983SCG/@@download/ENCFF983SCG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF033KIA bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF065JBC, ENCFF128DCK, ENCFF375WCZ, ENCFF578XGS 6488665 ENCODE Processing Pipeline 268f67afcb6d2cf2715784ac53771815 https://www.encodeproject.org/files/ENCFF033KIA/@@download/ENCFF033KIA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF095TYO bed narrowPeak optimal idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF033KIA, ENCFF266MOP, ENCFF366ELK 110208 ENCODE Processing Pipeline 460e9f143793618480cb42863a585128 https://www.encodeproject.org/files/ENCFF095TYO/@@download/ENCFF095TYO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF414RTP bigBed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF033KIA 13290895 ENCODE Processing Pipeline 3abde591e89bc0b7c9e60a21c4ce5363 https://www.encodeproject.org/files/ENCFF414RTP/@@download/ENCFF414RTP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF974XMU bigBed narrowPeak conservative idr thresholded peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF224MFN 237769 ENCODE Processing Pipeline 62b88cf64600400c8bbbbee206384082 https://www.encodeproject.org/files/ENCFF974XMU/@@download/ENCFF974XMU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF275IQO bam unfiltered alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF107WKN, ENCFF807MUK, ENCFF950QCU 5910908040 ENCODE Processing Pipeline 2bad52b62741de91669ed572a83423c8 https://www.encodeproject.org/files/ENCFF275IQO/@@download/ENCFF275IQO.bam hg19 released ENCFF170PZN bam unfiltered alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF300IMG, ENCFF334HNS, ENCFF807MUK 5043579220 ENCODE Processing Pipeline 59c54badf906f72291d5717c20ea9a1d https://www.encodeproject.org/files/ENCFF170PZN/@@download/ENCFF170PZN.bam hg19 released ENCFF300IMG fastq reads ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF334HNS 2362296410 Michael Snyder, Stanford f623a8fb01a0730b918be100e48cbec8 SRA:SRR5112298 https://www.encodeproject.org/files/ENCFF300IMG/@@download/ENCFF300IMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF334HNS fastq reads ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF300IMG 2312642119 Michael Snyder, Stanford 65a7fdc366c33fad7c7eada3f1881528 SRA:SRR5112298 https://www.encodeproject.org/files/ENCFF334HNS/@@download/ENCFF334HNS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF107WKN fastq reads ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF950QCU 2745491616 Michael Snyder, Stanford aaffc35d4a708183f7b613aa74945111 SRA:SRR5112297 https://www.encodeproject.org/files/ENCFF107WKN/@@download/ENCFF107WKN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF950QCU fastq reads ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF107WKN 2797344051 Michael Snyder, Stanford 05137e1b08f46ad2eb7706a0442b6574 SRA:SRR5112297 https://www.encodeproject.org/files/ENCFF950QCU/@@download/ENCFF950QCU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF293FTN bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF300IMG, ENCFF334HNS, ENCFF807MUK 4146751739 ENCODE Processing Pipeline ec5343d7f8308e16629172cc52e89603 https://www.encodeproject.org/files/ENCFF293FTN/@@download/ENCFF293FTN.bam hg19 released ENCFF030VNO bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF107WKN, ENCFF807MUK, ENCFF950QCU 4847850836 ENCODE Processing Pipeline 82f19871147a75cc12b297b61d6549e1 https://www.encodeproject.org/files/ENCFF030VNO/@@download/ENCFF030VNO.bam hg19 released ENCFF534KDG bigWig signal p-value ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF030VNO, ENCFF581ZJL 1407072141 ENCODE Processing Pipeline 70b956f209c924da818048c6d1c87963 https://www.encodeproject.org/files/ENCFF534KDG/@@download/ENCFF534KDG.bigWig hg19 released ENCFF665OXC bigWig signal p-value ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF293FTN 1153486186 ENCODE Processing Pipeline ef803e5be2a706dc4940f7c19d57b631 https://www.encodeproject.org/files/ENCFF665OXC/@@download/ENCFF665OXC.bigWig hg19 released ENCFF159VOP bigWig signal p-value ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF030VNO, ENCFF051LWI, ENCFF293FTN, ENCFF581ZJL 2126361424 ENCODE Processing Pipeline 6d8128b13ede751c6587c976eda701bf https://www.encodeproject.org/files/ENCFF159VOP/@@download/ENCFF159VOP.bigWig hg19 released ENCFF809NCM bigWig fold change over control ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF030VNO, ENCFF581ZJL 1312548225 ENCODE Processing Pipeline 8bddfcc2388f27d5444c4d0b0e140318 https://www.encodeproject.org/files/ENCFF809NCM/@@download/ENCFF809NCM.bigWig hg19 released ENCFF988XTY bigWig fold change over control ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF293FTN 1128947507 ENCODE Processing Pipeline f7afc1654c8e4fe122e3e30d58484cc4 https://www.encodeproject.org/files/ENCFF988XTY/@@download/ENCFF988XTY.bigWig hg19 released ENCFF469CQS bigBed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF816EGL 13082654 ENCODE Processing Pipeline f665217eb907c2cf49fafe18ddf77399 https://www.encodeproject.org/files/ENCFF469CQS/@@download/ENCFF469CQS.bigBed hg19 released ENCFF127MAS bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF030VNO, ENCFF051LWI, ENCFF293FTN, ENCFF581ZJL 7248174 ENCODE Processing Pipeline efa71e3f661982c3607f80b53f2dfe80 https://www.encodeproject.org/files/ENCFF127MAS/@@download/ENCFF127MAS.bed.gz hg19 released ENCFF856IOQ bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF293FTN 7007064 ENCODE Processing Pipeline ae25957c3193462c602438160b8c2ba7 https://www.encodeproject.org/files/ENCFF856IOQ/@@download/ENCFF856IOQ.bed.gz hg19 released ENCFF376CHW bigBed narrowPeak optimal idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF646VQW 1216912 ENCODE Processing Pipeline b4a4bd34b9383e9bafcce70e15027750 https://www.encodeproject.org/files/ENCFF376CHW/@@download/ENCFF376CHW.bigBed hg19 released ENCFF816EGL bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF030VNO, ENCFF581ZJL 7132065 ENCODE Processing Pipeline 0680be1dc095e0e4b488f230d0f6608d https://www.encodeproject.org/files/ENCFF816EGL/@@download/ENCFF816EGL.bed.gz hg19 released ENCFF646VQW bed narrowPeak optimal idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF127MAS, ENCFF816EGL, ENCFF856IOQ 621283 ENCODE Processing Pipeline 74f7c15fa48b8b2fb599b23015bb2563 https://www.encodeproject.org/files/ENCFF646VQW/@@download/ENCFF646VQW.bed.gz hg19 released ENCFF868YDK bigWig fold change over control ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF030VNO, ENCFF051LWI, ENCFF293FTN, ENCFF581ZJL 2167644869 ENCODE Processing Pipeline aad99d98ce43d7855db70787039a9b4a https://www.encodeproject.org/files/ENCFF868YDK/@@download/ENCFF868YDK.bigWig hg19 released ENCFF157PMK bigBed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF856IOQ 13276093 ENCODE Processing Pipeline a802e7b2972800e49e6106b461ace29e https://www.encodeproject.org/files/ENCFF157PMK/@@download/ENCFF157PMK.bigBed hg19 released ENCFF647EPQ bed narrowPeak conservative idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF127MAS, ENCFF816EGL, ENCFF856IOQ 442995 ENCODE Processing Pipeline 5be8bd5e5b9ca2a667b825dddc9d095d https://www.encodeproject.org/files/ENCFF647EPQ/@@download/ENCFF647EPQ.bed.gz hg19 released ENCFF823IUD bigBed narrowPeak conservative idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF647EPQ 935205 ENCODE Processing Pipeline a6a7474909e2a5140e584fbfce393874 https://www.encodeproject.org/files/ENCFF823IUD/@@download/ENCFF823IUD.bigBed hg19 released ENCFF605XDO bigBed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF127MAS 13071637 ENCODE Processing Pipeline 56fd4cef9a4e2c6d327964fa2b67c212 https://www.encodeproject.org/files/ENCFF605XDO/@@download/ENCFF605XDO.bigBed hg19 released ENCFF071CRE bam unfiltered alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF300IMG, ENCFF334HNS, ENCFF643CGH 5047652486 ENCODE Processing Pipeline 52a860afa1c22c213149f6207a5379b5 https://www.encodeproject.org/files/ENCFF071CRE/@@download/ENCFF071CRE.bam GRCh38 released ENCFF923LMN bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF300IMG, ENCFF334HNS, ENCFF643CGH 4150617098 ENCODE Processing Pipeline 18f4fd8d0440d1b3635936617b1f8671 https://www.encodeproject.org/files/ENCFF923LMN/@@download/ENCFF923LMN.bam GRCh38 released ENCFF545YDJ bam unfiltered alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF107WKN, ENCFF643CGH, ENCFF950QCU 5914683025 ENCODE Processing Pipeline 269d1a9166d41d8312c023146a040bf3 https://www.encodeproject.org/files/ENCFF545YDJ/@@download/ENCFF545YDJ.bam GRCh38 released ENCFF551IFV bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF107WKN, ENCFF643CGH, ENCFF950QCU 4851050996 ENCODE Processing Pipeline e24600f98ad1ed659b1da918bbbc8e9e https://www.encodeproject.org/files/ENCFF551IFV/@@download/ENCFF551IFV.bam GRCh38 released ENCFF536GBE bigWig signal p-value ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF551IFV, ENCFF910IKB 1090090832 ENCODE Processing Pipeline 0dbe5873f0445a1ef231d16f3504890e https://www.encodeproject.org/files/ENCFF536GBE/@@download/ENCFF536GBE.bigWig GRCh38 released ENCFF106LPZ bigWig signal p-value ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF923LMN 1106331326 ENCODE Processing Pipeline b18d0cd32db267bc2c907bbc5c5e2be8 https://www.encodeproject.org/files/ENCFF106LPZ/@@download/ENCFF106LPZ.bigWig GRCh38 released ENCFF926BKQ bigWig signal p-value ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF551IFV, ENCFF910IKB, ENCFF923LMN 1916202864 ENCODE Processing Pipeline 9c252bd0c7070d29ae779c3fe0a11bd7 https://www.encodeproject.org/files/ENCFF926BKQ/@@download/ENCFF926BKQ.bigWig GRCh38 released ENCFF002IFN bigWig fold change over control ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF551IFV, ENCFF910IKB 1320174556 ENCODE Processing Pipeline a46f3fc23c7c7c09720a46aad309134e https://www.encodeproject.org/files/ENCFF002IFN/@@download/ENCFF002IFN.bigWig GRCh38 released ENCFF265LLD bigWig fold change over control ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF923LMN 1130673114 ENCODE Processing Pipeline 9f624b1f676b668e1917957dd2817c26 https://www.encodeproject.org/files/ENCFF265LLD/@@download/ENCFF265LLD.bigWig GRCh38 released ENCFF398OOI bigWig fold change over control ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF551IFV, ENCFF910IKB, ENCFF923LMN 2189526546 ENCODE Processing Pipeline 0188ba4aaff8eac461b35dfbb2cb72f9 https://www.encodeproject.org/files/ENCFF398OOI/@@download/ENCFF398OOI.bigWig GRCh38 released ENCFF138SQK bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF551IFV, ENCFF910IKB 7045635 ENCODE Processing Pipeline 0890d982ee973fd384230043d8c1f870 https://www.encodeproject.org/files/ENCFF138SQK/@@download/ENCFF138SQK.bed.gz GRCh38 released ENCFF024BEZ bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF923LMN 6927208 ENCODE Processing Pipeline 8ade1d8fa2d1a1973a651e5da95eff35 https://www.encodeproject.org/files/ENCFF024BEZ/@@download/ENCFF024BEZ.bed.gz GRCh38 released ENCFF461ZWP bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF551IFV, ENCFF910IKB, ENCFF923LMN 7236048 ENCODE Processing Pipeline bf80e764f5b7fb97655213b27d8f34be https://www.encodeproject.org/files/ENCFF461ZWP/@@download/ENCFF461ZWP.bed.gz GRCh38 released ENCFF381OQQ bigBed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF138SQK 13063738 ENCODE Processing Pipeline a55c39849b67d5b6326e9475d1e7e8c9 https://www.encodeproject.org/files/ENCFF381OQQ/@@download/ENCFF381OQQ.bigBed GRCh38 released ENCFF927ITQ bigBed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF024BEZ 13272352 ENCODE Processing Pipeline 491234db2e49f31c8dc7b0c22d05c0bd https://www.encodeproject.org/files/ENCFF927ITQ/@@download/ENCFF927ITQ.bigBed GRCh38 released ENCFF226JPE bigBed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF461ZWP 13072844 ENCODE Processing Pipeline 3bc76a3df1cb096f7f8e7d5bc5643275 https://www.encodeproject.org/files/ENCFF226JPE/@@download/ENCFF226JPE.bigBed GRCh38 released ENCFF263NDI bed narrowPeak conservative idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF024BEZ, ENCFF138SQK, ENCFF419RSJ, ENCFF461ZWP 441643 ENCODE Processing Pipeline 79d7ff2e44217193f2c934be2c6436dc https://www.encodeproject.org/files/ENCFF263NDI/@@download/ENCFF263NDI.bed.gz GRCh38 released ENCFF691DNA bigBed narrowPeak conservative idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF263NDI 936709 ENCODE Processing Pipeline 22d56d97f89e7df4bd58d39e211193f3 https://www.encodeproject.org/files/ENCFF691DNA/@@download/ENCFF691DNA.bigBed GRCh38 released ENCFF063NXI bed narrowPeak optimal idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF024BEZ, ENCFF138SQK, ENCFF419RSJ, ENCFF461ZWP 622936 ENCODE Processing Pipeline b6c9eb5283c3caed90a72319bac3b3e5 https://www.encodeproject.org/files/ENCFF063NXI/@@download/ENCFF063NXI.bed.gz GRCh38 released ENCFF052MBA bigBed narrowPeak optimal idr thresholded peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF063NXI 1224286 ENCODE Processing Pipeline dfe18ba2811ce41de0325e5713994bb1 https://www.encodeproject.org/files/ENCFF052MBA/@@download/ENCFF052MBA.bigBed GRCh38 released ENCFF616ZLN fastq reads ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 1190170101 Xiang-Dong Fu, UCSD 1a0fddec992d42e59a168d75988a0ec5 SRA:SRR6213901 https://www.encodeproject.org/files/ENCFF616ZLN/@@download/ENCFF616ZLN.fastq.gz Illumina HiSeq 2500 /files/ENCFF526TGW/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF114BXG fastq reads ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 723870854 Xiang-Dong Fu, UCSD 28334059d8d7e0949a7cabf83e0c9618 SRA:SRR6213900 https://www.encodeproject.org/files/ENCFF114BXG/@@download/ENCFF114BXG.fastq.gz Illumina HiSeq 2500 /files/ENCFF883CMB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF741JBT bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF114BXG, ENCFF807MUK 511361755 ENCODE Processing Pipeline 09b0b18139b1d854984d672a31cda0fe https://www.encodeproject.org/files/ENCFF741JBT/@@download/ENCFF741JBT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF996GNF bam unfiltered alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF114BXG, ENCFF807MUK 933847481 ENCODE Processing Pipeline fda4d4ff42037de65df215308b78eea5 https://www.encodeproject.org/files/ENCFF996GNF/@@download/ENCFF996GNF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF783SHE bam unfiltered alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF114BXG, ENCFF643CGH 937238708 ENCODE Processing Pipeline 60921b69243107bb3a1d99e74cf9658a https://www.encodeproject.org/files/ENCFF783SHE/@@download/ENCFF783SHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF303HBX bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF114BXG, ENCFF643CGH 510770240 ENCODE Processing Pipeline ad6290e53b1658b9ca9aa91df6789d9d https://www.encodeproject.org/files/ENCFF303HBX/@@download/ENCFF303HBX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF431TAL bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF616ZLN, ENCFF643CGH 822036770 ENCODE Processing Pipeline f20353dad5152a058c398f1d8864add4 https://www.encodeproject.org/files/ENCFF431TAL/@@download/ENCFF431TAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF958HCN bam unfiltered alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF616ZLN, ENCFF643CGH 1513072810 ENCODE Processing Pipeline ab6b15164eebbc8d206f86832e7acfae https://www.encodeproject.org/files/ENCFF958HCN/@@download/ENCFF958HCN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF241WTA bam unfiltered alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF616ZLN, ENCFF807MUK 1507095954 ENCODE Processing Pipeline 27bcacef6aaeb8b0cfadf895fd49a21e https://www.encodeproject.org/files/ENCFF241WTA/@@download/ENCFF241WTA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF764SIQ bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF616ZLN, ENCFF807MUK 822857823 ENCODE Processing Pipeline 53afa648d41422dbf50ecce29b7f219a https://www.encodeproject.org/files/ENCFF764SIQ/@@download/ENCFF764SIQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF274FNN bigWig fold change over control ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF580VRU, ENCFF741JBT, ENCFF764SIQ, ENCFF951UMF 917441701 ENCODE Processing Pipeline 2aa9d000060f666e5df4206a5d4bbe06 https://www.encodeproject.org/files/ENCFF274FNN/@@download/ENCFF274FNN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF975JLG bigWig signal p-value ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF580VRU, ENCFF764SIQ, ENCFF951UMF 908515003 ENCODE Processing Pipeline a52290689e032543d14bc6c972b73dbc https://www.encodeproject.org/files/ENCFF975JLG/@@download/ENCFF975JLG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF814KCX bigWig fold change over control ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF580VRU, ENCFF764SIQ, ENCFF951UMF 630778528 ENCODE Processing Pipeline 8d9384c51fc87f805c4f0a4c3dc19467 https://www.encodeproject.org/files/ENCFF814KCX/@@download/ENCFF814KCX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF950KWC bed narrowPeak optimal idr thresholded peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF112VKY, ENCFF599UGJ, ENCFF922ONM 132567 ENCODE Processing Pipeline 8b524916f309bebd032da25baa1041f7 https://www.encodeproject.org/files/ENCFF950KWC/@@download/ENCFF950KWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF531WXC bigWig signal p-value ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF580VRU, ENCFF741JBT, ENCFF764SIQ, ENCFF951UMF 1050734636 ENCODE Processing Pipeline ed883d55e7d69c65988946cb856b90b9 https://www.encodeproject.org/files/ENCFF531WXC/@@download/ENCFF531WXC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF599UGJ bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF580VRU, ENCFF764SIQ, ENCFF951UMF 6182378 ENCODE Processing Pipeline 0463821545dee1f09ee5100c63248030 https://www.encodeproject.org/files/ENCFF599UGJ/@@download/ENCFF599UGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF112VKY bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF580VRU, ENCFF741JBT, ENCFF764SIQ, ENCFF951UMF 6835299 ENCODE Processing Pipeline eec7575c2bdbccccc9842193ebcae8a9 https://www.encodeproject.org/files/ENCFF112VKY/@@download/ENCFF112VKY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF162VZI bigBed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF599UGJ 13430970 ENCODE Processing Pipeline bfec287e4469f3b60af380beca1000ab https://www.encodeproject.org/files/ENCFF162VZI/@@download/ENCFF162VZI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF925YCB bigBed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF112VKY 13383071 ENCODE Processing Pipeline 2137837227c0c7616624a5f8562852cd https://www.encodeproject.org/files/ENCFF925YCB/@@download/ENCFF925YCB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF462WQI bigBed narrowPeak optimal idr thresholded peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF950KWC 286685 ENCODE Processing Pipeline 0611d32d0d1d11b21fdf147575fb9108 https://www.encodeproject.org/files/ENCFF462WQI/@@download/ENCFF462WQI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF234BYJ bigWig signal p-value ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF303HBX 893685750 ENCODE Processing Pipeline 6ade0e88b52deae74465238f0080c6cf https://www.encodeproject.org/files/ENCFF234BYJ/@@download/ENCFF234BYJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF108BDL bigWig fold change over control ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF303HBX 489349401 ENCODE Processing Pipeline b729ead43ddc9e223e63dd7fc8e57afe https://www.encodeproject.org/files/ENCFF108BDL/@@download/ENCFF108BDL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF339FAD bigWig signal p-value ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431TAL 942181452 ENCODE Processing Pipeline 52913aa3939c80cf0fbf435e10e6a67c https://www.encodeproject.org/files/ENCFF339FAD/@@download/ENCFF339FAD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF875TXP bigWig signal p-value ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF303HBX, ENCFF431TAL 1170812490 ENCODE Processing Pipeline 858e3699d595b3288e767d8be7d79279 https://www.encodeproject.org/files/ENCFF875TXP/@@download/ENCFF875TXP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF774UVW bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431TAL 6090681 ENCODE Processing Pipeline 4ba9eba25baa803da7105b4aca4a9655 https://www.encodeproject.org/files/ENCFF774UVW/@@download/ENCFF774UVW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF060IRU bigWig fold change over control ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431TAL 646009466 ENCODE Processing Pipeline 84c71007b20b5a94b233b9c9c3372a2c https://www.encodeproject.org/files/ENCFF060IRU/@@download/ENCFF060IRU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF089NBN bigWig fold change over control ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF303HBX, ENCFF431TAL 864264837 ENCODE Processing Pipeline bf4fc68621450f2c66df230b84604c75 https://www.encodeproject.org/files/ENCFF089NBN/@@download/ENCFF089NBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF626OZZ bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF303HBX, ENCFF431TAL 6732045 ENCODE Processing Pipeline ec9fb1d22cd6fd0cbde85a34ad6056fc https://www.encodeproject.org/files/ENCFF626OZZ/@@download/ENCFF626OZZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF653RPC bigBed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF571NIO 13327554 ENCODE Processing Pipeline 35911690617dc1c75e7c1b2f409b1734 https://www.encodeproject.org/files/ENCFF653RPC/@@download/ENCFF653RPC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF350JXR bigBed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF774UVW 13455426 ENCODE Processing Pipeline dd1ed941482b5d5f30fbc852b541311c https://www.encodeproject.org/files/ENCFF350JXR/@@download/ENCFF350JXR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF442KYQ bigBed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF626OZZ 13413873 ENCODE Processing Pipeline be9d914bc121265d36a3beafce0018b4 https://www.encodeproject.org/files/ENCFF442KYQ/@@download/ENCFF442KYQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF216YZI bed narrowPeak optimal idr thresholded peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF571NIO, ENCFF626OZZ, ENCFF774UVW 129183 ENCODE Processing Pipeline 00f43d23cbf152e6cbfa78ae0bdb859b https://www.encodeproject.org/files/ENCFF216YZI/@@download/ENCFF216YZI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF571NIO bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF303HBX 5729094 ENCODE Processing Pipeline f4ef9d71415574d1f01b90a99d08da87 https://www.encodeproject.org/files/ENCFF571NIO/@@download/ENCFF571NIO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF167ILJ bigBed narrowPeak optimal idr thresholded peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF216YZI 282706 ENCODE Processing Pipeline 838482cfcfcdbf9f54dcf0daef104617 https://www.encodeproject.org/files/ENCFF167ILJ/@@download/ENCFF167ILJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF934NCU bigWig signal p-value ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF580VRU, ENCFF741JBT, ENCFF951UMF 886420574 ENCODE Processing Pipeline fbfcf4d9a5eca3eca05a824d98f2fa73 https://www.encodeproject.org/files/ENCFF934NCU/@@download/ENCFF934NCU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF815UVG bigWig fold change over control ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF580VRU, ENCFF741JBT, ENCFF951UMF 489775525 ENCODE Processing Pipeline fa9e0df0bb131465daccdffb94c5cbc0 https://www.encodeproject.org/files/ENCFF815UVG/@@download/ENCFF815UVG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF582KOD bigBed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF922ONM 13321688 ENCODE Processing Pipeline 26433f962d381e191530c1b0d37c34ff https://www.encodeproject.org/files/ENCFF582KOD/@@download/ENCFF582KOD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF922ONM bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF580VRU, ENCFF741JBT, ENCFF951UMF 5898943 ENCODE Processing Pipeline 980b8474b7ed76b919c62018583495c3 https://www.encodeproject.org/files/ENCFF922ONM/@@download/ENCFF922ONM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF501ZUQ bam unfiltered alignments ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF783HNP, ENCFF807MUK, ENCFF865CRA 4788861043 ENCODE Processing Pipeline f5c4f665cdfd547a6c82d763dc29484f https://www.encodeproject.org/files/ENCFF501ZUQ/@@download/ENCFF501ZUQ.bam hg19 released antibody characterized with exemption ENCFF865CRA fastq reads ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF783HNP 2165218215 Michael Snyder, Stanford 075001107e4b04fc2670f67ab0256cbc SRA:SRR6213143 https://www.encodeproject.org/files/ENCFF865CRA/@@download/ENCFF865CRA.fastq.gz Illumina HiSeq 2000 /files/ENCFF892NGP/ released antibody characterized with exemption ENCFF783HNP fastq reads ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF865CRA 2095830346 Michael Snyder, Stanford 52d668e561b3f23c7504f71290cc047b SRA:SRR6213143 https://www.encodeproject.org/files/ENCFF783HNP/@@download/ENCFF783HNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF871RZY/ released antibody characterized with exemption ENCFF308BIP bam alignments ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF783HNP, ENCFF807MUK, ENCFF865CRA 3923525410 ENCODE Processing Pipeline 7593ee2c827c3cfcc3ba2aef37b56b7c https://www.encodeproject.org/files/ENCFF308BIP/@@download/ENCFF308BIP.bam hg19 released antibody characterized with exemption ENCFF852RUX bam unfiltered alignments ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF783HNP, ENCFF865CRA 4796485251 ENCODE Processing Pipeline 873f96f61c86528067ce17fd0de33ba8 https://www.encodeproject.org/files/ENCFF852RUX/@@download/ENCFF852RUX.bam GRCh38 released antibody characterized with exemption ENCFF909IAW bam alignments ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF783HNP, ENCFF865CRA 3931322199 ENCODE Processing Pipeline 375c2bf3456b6162c47e76e011eb8fef https://www.encodeproject.org/files/ENCFF909IAW/@@download/ENCFF909IAW.bam GRCh38 released antibody characterized with exemption ENCFF703CWY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF092GNG 48052 ENCODE Processing Pipeline 5fa4caad711757638202faf1e0be22b2 https://www.encodeproject.org/files/ENCFF703CWY/@@download/ENCFF703CWY.bed.gz hg19 released antibody characterized with exemption ENCFF894KER bigBed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF092GNG 11368544 ENCODE Processing Pipeline c63fe0421c295bb51c4c6e156e2dab3a https://www.encodeproject.org/files/ENCFF894KER/@@download/ENCFF894KER.bigBed hg19 released antibody characterized with exemption ENCFF862XUL bigWig fold change over control ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF308BIP, ENCFF872MDZ 966541465 ENCODE Processing Pipeline 1cfafd7fac3bdc9c66b22ae361c48f21 https://www.encodeproject.org/files/ENCFF862XUL/@@download/ENCFF862XUL.bigWig hg19 released antibody characterized with exemption ENCFF105SWG bigWig signal p-value ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF308BIP, ENCFF872MDZ 856169442 ENCODE Processing Pipeline 56963cd8183ed2f45a643b54f5f38072 https://www.encodeproject.org/files/ENCFF105SWG/@@download/ENCFF105SWG.bigWig hg19 released antibody characterized with exemption ENCFF092GNG bed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF308BIP, ENCFF872MDZ 5203560 ENCODE Processing Pipeline 7b59c16851efa82e88aa0df8ed64ecdf https://www.encodeproject.org/files/ENCFF092GNG/@@download/ENCFF092GNG.bed.gz hg19 released antibody characterized with exemption ENCFF390ELR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF703CWY 130926 ENCODE Processing Pipeline 2225eb28462ccbe26760d54fbf51d749 https://www.encodeproject.org/files/ENCFF390ELR/@@download/ENCFF390ELR.bigBed hg19 released antibody characterized with exemption ENCFF667NSA bigWig signal p-value ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF607RXM, ENCFF909IAW 756217672 ENCODE Processing Pipeline 8db1b4548981abf9257774f06dd0b69e https://www.encodeproject.org/files/ENCFF667NSA/@@download/ENCFF667NSA.bigWig GRCh38 released antibody characterized with exemption ENCFF384ZDT bigBed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF882LTN 11387980 ENCODE Processing Pipeline a762728fdf5fc74b5a9d1f1ffa5ad6cc https://www.encodeproject.org/files/ENCFF384ZDT/@@download/ENCFF384ZDT.bigBed GRCh38 released antibody characterized with exemption ENCFF293VSF bigWig fold change over control ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF607RXM, ENCFF909IAW 963674916 ENCODE Processing Pipeline 187421ee2b391f07aee24f0651dc964e https://www.encodeproject.org/files/ENCFF293VSF/@@download/ENCFF293VSF.bigWig GRCh38 released antibody characterized with exemption ENCFF882LTN bed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF607RXM, ENCFF909IAW 5213263 ENCODE Processing Pipeline 5d7fa734e5207ab4d43ce77e3bb6e993 https://www.encodeproject.org/files/ENCFF882LTN/@@download/ENCFF882LTN.bed.gz GRCh38 released antibody characterized with exemption ENCFF481CNC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF882LTN 48638 ENCODE Processing Pipeline c9922804b819d6894cd9907cf0d1e9d1 https://www.encodeproject.org/files/ENCFF481CNC/@@download/ENCFF481CNC.bed.gz GRCh38 released antibody characterized with exemption ENCFF119YXI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF481CNC 132395 ENCODE Processing Pipeline cda3c2780c7a11bb6e479934457fd7fc https://www.encodeproject.org/files/ENCFF119YXI/@@download/ENCFF119YXI.bigBed GRCh38 released antibody characterized with exemption ENCFF131XZE bam unfiltered alignments ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF700SNB, ENCFF800HLE, ENCFF807MUK 5849002633 ENCODE Processing Pipeline c273553b266c96f4b6b1f50c31ff677e https://www.encodeproject.org/files/ENCFF131XZE/@@download/ENCFF131XZE.bam hg19 released antibody characterized with exemption ENCFF800HLE fastq reads ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF700SNB 2571961740 Michael Snyder, Stanford 2778f08732a7214af87d438b7815b7d4 SRA:SRR6214336 https://www.encodeproject.org/files/ENCFF800HLE/@@download/ENCFF800HLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF871RZY/ released antibody characterized with exemption ENCFF700SNB fastq reads ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF800HLE 2653933622 Michael Snyder, Stanford 036b4430ee125a5b0e6e1a7225494aac SRA:SRR6214336 https://www.encodeproject.org/files/ENCFF700SNB/@@download/ENCFF700SNB.fastq.gz Illumina HiSeq 2000 /files/ENCFF892NGP/ released antibody characterized with exemption ENCFF040UMF bam alignments ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF700SNB, ENCFF800HLE, ENCFF807MUK 4864398730 ENCODE Processing Pipeline 502f56c72d1e947279596e52851323f5 https://www.encodeproject.org/files/ENCFF040UMF/@@download/ENCFF040UMF.bam hg19 released antibody characterized with exemption ENCFF987ONO bam unfiltered alignments ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF643CGH, ENCFF700SNB, ENCFF800HLE 5859222441 ENCODE Processing Pipeline 2315de45be0fda307d6e5e4393ad9c11 https://www.encodeproject.org/files/ENCFF987ONO/@@download/ENCFF987ONO.bam GRCh38 released antibody characterized with exemption ENCFF895LEP bam alignments ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF643CGH, ENCFF700SNB, ENCFF800HLE 4877403316 ENCODE Processing Pipeline ed2773ce0b47ea15c8b7b8748b025a2b https://www.encodeproject.org/files/ENCFF895LEP/@@download/ENCFF895LEP.bam GRCh38 released antibody characterized with exemption ENCFF169GIW bigWig signal p-value ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF040UMF, ENCFF872MDZ 1132836439 ENCODE Processing Pipeline 24a1e20e3ffc3b58cbaf2111aed4b72f https://www.encodeproject.org/files/ENCFF169GIW/@@download/ENCFF169GIW.bigWig hg19 released antibody characterized with exemption ENCFF476VJS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF874HRJ 82061 ENCODE Processing Pipeline 105689388a3a81dfb4c1e1c760b4a22a https://www.encodeproject.org/files/ENCFF476VJS/@@download/ENCFF476VJS.bigBed hg19 released antibody characterized with exemption ENCFF396KDW bigBed narrowPeak peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF806NLH 11472031 ENCODE Processing Pipeline d985bb18536119c691c528ee7aff6b1e https://www.encodeproject.org/files/ENCFF396KDW/@@download/ENCFF396KDW.bigBed hg19 released antibody characterized with exemption ENCFF806NLH bed narrowPeak peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF040UMF, ENCFF872MDZ 5510644 ENCODE Processing Pipeline ca4fb3f490994d5bb429aa644fa5910b https://www.encodeproject.org/files/ENCFF806NLH/@@download/ENCFF806NLH.bed.gz hg19 released antibody characterized with exemption ENCFF275QQZ bigWig fold change over control ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF040UMF, ENCFF872MDZ 1130011462 ENCODE Processing Pipeline 9dcf396402782a1fcb6d079ae89c3eb2 https://www.encodeproject.org/files/ENCFF275QQZ/@@download/ENCFF275QQZ.bigWig hg19 released antibody characterized with exemption ENCFF874HRJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF806NLH 2065 ENCODE Processing Pipeline fdf7d82470617bf151c2d4bd4ca1dff5 https://www.encodeproject.org/files/ENCFF874HRJ/@@download/ENCFF874HRJ.bed.gz hg19 released antibody characterized with exemption ENCFF880FUR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF075FKU, ENCFF419RSJ 2841 ENCODE Processing Pipeline e444e893711f84acd70a53d04d9102b5 https://www.encodeproject.org/files/ENCFF880FUR/@@download/ENCFF880FUR.bed.gz GRCh38 released antibody characterized with exemption ENCFF966AKF bigWig fold change over control ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF607RXM, ENCFF895LEP 1123700841 ENCODE Processing Pipeline ca5844d0535cab3d83f0f469e5063348 https://www.encodeproject.org/files/ENCFF966AKF/@@download/ENCFF966AKF.bigWig GRCh38 released antibody characterized with exemption ENCFF075FKU bed narrowPeak peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF607RXM, ENCFF895LEP 5523355 ENCODE Processing Pipeline 99a9d342c4dc77578f50f9e257b502ec https://www.encodeproject.org/files/ENCFF075FKU/@@download/ENCFF075FKU.bed.gz GRCh38 released antibody characterized with exemption ENCFF120UEQ bigBed narrowPeak peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF075FKU 11492599 ENCODE Processing Pipeline 040d4423d84eb2fceaf2633c14cc3bf1 https://www.encodeproject.org/files/ENCFF120UEQ/@@download/ENCFF120UEQ.bigBed GRCh38 released antibody characterized with exemption ENCFF369HMM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF880FUR 86527 ENCODE Processing Pipeline 434790671142a8476cb2d7f188570de3 https://www.encodeproject.org/files/ENCFF369HMM/@@download/ENCFF369HMM.bigBed GRCh38 released antibody characterized with exemption ENCFF573TJM bigWig signal p-value ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF607RXM, ENCFF895LEP 1128348860 ENCODE Processing Pipeline b09f136f24ed4642a14fa21beb158e5e https://www.encodeproject.org/files/ENCFF573TJM/@@download/ENCFF573TJM.bigWig GRCh38 released antibody characterized with exemption ENCFF613GCH fastq reads ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF884DQI 1417620797 Michael Snyder, Stanford 2210857f605cd7283653f50a29560a97 SRA:SRR6212635 https://www.encodeproject.org/files/ENCFF613GCH/@@download/ENCFF613GCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF638HYS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF884DQI fastq reads ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF613GCH 1400006314 Michael Snyder, Stanford 71faafbc2c1a93cd8367ac3404753062 SRA:SRR6212635 https://www.encodeproject.org/files/ENCFF884DQI/@@download/ENCFF884DQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF716ODJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF712ZNQ bam alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF613GCH, ENCFF807MUK, ENCFF884DQI 2743500095 ENCODE Processing Pipeline f900c42442907d9ff7c053a79539806f https://www.encodeproject.org/files/ENCFF712ZNQ/@@download/ENCFF712ZNQ.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF772IAG fastq reads ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF595UYF 4966171253 Michael Snyder, Stanford 44d8b33a1af137e6b1b47791952b8e27 SRA:SRR6212636 https://www.encodeproject.org/files/ENCFF772IAG/@@download/ENCFF772IAG.fastq.gz Illumina HiSeq 2000 /files/ENCFF638HYS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF595UYF fastq reads ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF772IAG 5437477236 Michael Snyder, Stanford ddc101f8942c05bb3e8681e38ca7a8f9 SRA:SRR6212636 https://www.encodeproject.org/files/ENCFF595UYF/@@download/ENCFF595UYF.fastq.gz Illumina HiSeq 2000 /files/ENCFF716ODJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF995PAE bam unfiltered alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF595UYF, ENCFF613GCH, ENCFF772IAG, ENCFF807MUK, ENCFF884DQI 12986881500 ENCODE Processing Pipeline 4bb56482e6656b9671ed60cad1250b50 https://www.encodeproject.org/files/ENCFF995PAE/@@download/ENCFF995PAE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF905KCY bam unfiltered alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF595UYF, ENCFF613GCH, ENCFF643CGH, ENCFF772IAG, ENCFF884DQI 13012667543 ENCODE Processing Pipeline 91bc4277098d668a2bc03e9c842ded2b https://www.encodeproject.org/files/ENCFF905KCY/@@download/ENCFF905KCY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF569UCD bam alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF595UYF, ENCFF613GCH, ENCFF772IAG, ENCFF807MUK, ENCFF884DQI 9755318953 ENCODE Processing Pipeline a6a16a6bbae1e0a1bb292bcf9af5ef9f https://www.encodeproject.org/files/ENCFF569UCD/@@download/ENCFF569UCD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF925EOE bam alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF595UYF, ENCFF613GCH, ENCFF643CGH, ENCFF772IAG, ENCFF884DQI 9776135408 ENCODE Processing Pipeline 5b45528d3798bba7050a12f8e81a29f9 https://www.encodeproject.org/files/ENCFF925EOE/@@download/ENCFF925EOE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF471MEB bigWig signal p-value ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF230HKK, ENCFF569UCD 1051109662 ENCODE Processing Pipeline 8f7ab32304e9055467bad1b5f63382e4 https://www.encodeproject.org/files/ENCFF471MEB/@@download/ENCFF471MEB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF741BED bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF399TIE 584548 ENCODE Processing Pipeline c6396699b537b24c35b1291ff4277b2e https://www.encodeproject.org/files/ENCFF741BED/@@download/ENCFF741BED.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF518IAE bigWig fold change over control ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF230HKK, ENCFF569UCD 1943216393 ENCODE Processing Pipeline 0550aa6c17db007a45b2d8da133a8a45 https://www.encodeproject.org/files/ENCFF518IAE/@@download/ENCFF518IAE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF399TIE bed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF230HKK, ENCFF569UCD 7083930 ENCODE Processing Pipeline c902b02fece46d7fe330c058e041f453 https://www.encodeproject.org/files/ENCFF399TIE/@@download/ENCFF399TIE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF025FKT bigBed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF399TIE 13748568 ENCODE Processing Pipeline e7bb26c9daf780958877577b9be0e134 https://www.encodeproject.org/files/ENCFF025FKT/@@download/ENCFF025FKT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF156YWX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF741BED 1021367 ENCODE Processing Pipeline 36fe0e7310b17a36af729f6b12f12cd0 https://www.encodeproject.org/files/ENCFF156YWX/@@download/ENCFF156YWX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF158LCC bigWig fold change over control ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF811KEY, ENCFF925EOE 1952847291 ENCODE Processing Pipeline 1cc198764f93f716ab14c27ae3bc5a1b https://www.encodeproject.org/files/ENCFF158LCC/@@download/ENCFF158LCC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF650MME bigWig signal p-value ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF811KEY, ENCFF925EOE 1050983208 ENCODE Processing Pipeline 475a044d5cdca0e3a3270835619bf750 https://www.encodeproject.org/files/ENCFF650MME/@@download/ENCFF650MME.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF234VTM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF881FZQ 588747 ENCODE Processing Pipeline 3c80efe4c52d7680ca71af8bb4be9017 https://www.encodeproject.org/files/ENCFF234VTM/@@download/ENCFF234VTM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF881FZQ bed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF811KEY, ENCFF925EOE 7075138 ENCODE Processing Pipeline 2c6328caaa46d732afc8aea9e66dd939 https://www.encodeproject.org/files/ENCFF881FZQ/@@download/ENCFF881FZQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF270XWF bigBed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF881FZQ 13745553 ENCODE Processing Pipeline 8bee3b1ae3e6e0bec17c52dd3202f21f https://www.encodeproject.org/files/ENCFF270XWF/@@download/ENCFF270XWF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF566EOC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF234VTM 1028692 ENCODE Processing Pipeline f6629190b53a569d8ae6fbf6d81b4522 https://www.encodeproject.org/files/ENCFF566EOC/@@download/ENCFF566EOC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF090TRF fastq reads ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF014FRE 1839546826 Michael Snyder, Stanford 151c01116233af0e6c1bd4cd83a25260 SRA:SRR6212617 https://www.encodeproject.org/files/ENCFF090TRF/@@download/ENCFF090TRF.fastq.gz Illumina HiSeq 2000 /files/ENCFF702VBZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF014FRE fastq reads ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF090TRF 1810741630 Michael Snyder, Stanford cf4e1a6da5f6564efdab18648861ebdb SRA:SRR6212617 https://www.encodeproject.org/files/ENCFF014FRE/@@download/ENCFF014FRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF048IPJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF597CQI bam alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF014FRE, ENCFF090TRF, ENCFF807MUK 3297213261 ENCODE Processing Pipeline 066cbe51b10b4233cf9f87a3583a9afc https://www.encodeproject.org/files/ENCFF597CQI/@@download/ENCFF597CQI.bam hg19 archived mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF800XBW fastq reads ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF233QXS 4333407213 Michael Snyder, Stanford c674fe0bd7bd45c9735e015fcd6f1987 SRA:SRR6212618 https://www.encodeproject.org/files/ENCFF800XBW/@@download/ENCFF800XBW.fastq.gz Illumina HiSeq 2000 /files/ENCFF702VBZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF233QXS fastq reads ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF800XBW 4368583701 Michael Snyder, Stanford 74c7867d99bfb9825184c3c63138f381 SRA:SRR6212618 https://www.encodeproject.org/files/ENCFF233QXS/@@download/ENCFF233QXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF048IPJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF319VKV bam unfiltered alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014FRE, ENCFF090TRF, ENCFF233QXS, ENCFF800XBW, ENCFF807MUK 11647316144 ENCODE Processing Pipeline acc4fb8c819478cd999ace70b979e041 https://www.encodeproject.org/files/ENCFF319VKV/@@download/ENCFF319VKV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF989RHA bam unfiltered alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014FRE, ENCFF090TRF, ENCFF233QXS, ENCFF643CGH, ENCFF800XBW 11655072319 ENCODE Processing Pipeline 31ed004ea712612544d48c545027f7a2 https://www.encodeproject.org/files/ENCFF989RHA/@@download/ENCFF989RHA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF880STQ bam alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014FRE, ENCFF090TRF, ENCFF233QXS, ENCFF800XBW, ENCFF807MUK 8018784753 ENCODE Processing Pipeline 3ac83b015b4e02cc6cd178e372033656 https://www.encodeproject.org/files/ENCFF880STQ/@@download/ENCFF880STQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728XMR bam alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014FRE, ENCFF090TRF, ENCFF233QXS, ENCFF643CGH, ENCFF800XBW 8030958869 ENCODE Processing Pipeline ba0b11e9399f87e567f6d5479c8894b1 https://www.encodeproject.org/files/ENCFF728XMR/@@download/ENCFF728XMR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF270LMJ bigWig signal p-value ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF027EKQ, ENCFF880STQ 1066496314 ENCODE Processing Pipeline 0c1dd98cf97affd0e1632cf17f4f9956 https://www.encodeproject.org/files/ENCFF270LMJ/@@download/ENCFF270LMJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF070JJB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF849CHG 250555 ENCODE Processing Pipeline 2f1179df2b904af2bb4425b2ee51b649 https://www.encodeproject.org/files/ENCFF070JJB/@@download/ENCFF070JJB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF849CHG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF739MCU 104405 ENCODE Processing Pipeline 1d3fc34b49934904e2fc16e0338aa48b https://www.encodeproject.org/files/ENCFF849CHG/@@download/ENCFF849CHG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF436UEZ bigWig fold change over control ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF027EKQ, ENCFF880STQ 1578644535 ENCODE Processing Pipeline 011962bc8da5cb081bd1c90e57c5effd https://www.encodeproject.org/files/ENCFF436UEZ/@@download/ENCFF436UEZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF399VHD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF905CUU 258711 ENCODE Processing Pipeline 24be6eb16f178582eff95460a6c05680 https://www.encodeproject.org/files/ENCFF399VHD/@@download/ENCFF399VHD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF739MCU bed narrowPeak peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF027EKQ, ENCFF880STQ 6389537 ENCODE Processing Pipeline 82040a6cee730d66d9f28f7484867b64 https://www.encodeproject.org/files/ENCFF739MCU/@@download/ENCFF739MCU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF055QAV bigBed narrowPeak peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF739MCU 11364532 ENCODE Processing Pipeline d29a77aa065d842d62b9021c860a2348 https://www.encodeproject.org/files/ENCFF055QAV/@@download/ENCFF055QAV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF871NQV bigWig signal p-value ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF162JEL, ENCFF728XMR 1060092587 ENCODE Processing Pipeline 2f38cfb1a0e20da8d8b15ce6bb48785f https://www.encodeproject.org/files/ENCFF871NQV/@@download/ENCFF871NQV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF757GDD bigWig fold change over control ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF162JEL, ENCFF728XMR 1572667782 ENCODE Processing Pipeline 8705651dd47d0248b1fc0c786859d464 https://www.encodeproject.org/files/ENCFF757GDD/@@download/ENCFF757GDD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF460HUY bigBed narrowPeak peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF603GGT 11386941 ENCODE Processing Pipeline a3fc5cc330025375372c8f6b54591fd8 https://www.encodeproject.org/files/ENCFF460HUY/@@download/ENCFF460HUY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF603GGT bed narrowPeak peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF162JEL, ENCFF728XMR 6396021 ENCODE Processing Pipeline b3ad172cfaf1c66ccbcf278d6bdee1dd https://www.encodeproject.org/files/ENCFF603GGT/@@download/ENCFF603GGT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF905CUU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF419RSJ, ENCFF603GGT 108387 ENCODE Processing Pipeline ebab74796cc91dd01af24d0453f4e3a5 https://www.encodeproject.org/files/ENCFF905CUU/@@download/ENCFF905CUU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF113FFZ fastq reads ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2030235556 Richard Myers, HAIB b100e2f9b5ad1e9de92823452749303c SRA:SRR5339564 https://www.encodeproject.org/files/ENCFF113FFZ/@@download/ENCFF113FFZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685OLC fastq reads ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1616336069 Richard Myers, HAIB 065560443c3f334eb27b9c4f718096af SRA:SRR5339565 https://www.encodeproject.org/files/ENCFF685OLC/@@download/ENCFF685OLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF954XER bam unfiltered alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF685OLC 1679716668 ENCODE Processing Pipeline cf84d4f5063a7f264c58e9d31e3b199a https://www.encodeproject.org/files/ENCFF954XER/@@download/ENCFF954XER.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF073LYD bam unfiltered alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF685OLC, ENCFF807MUK 1677142500 ENCODE Processing Pipeline 67b7a04272c79633c0dfcf716a10f9a7 https://www.encodeproject.org/files/ENCFF073LYD/@@download/ENCFF073LYD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF892XHN bam unfiltered alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF113FFZ, ENCFF643CGH 2098855497 ENCODE Processing Pipeline 094e122b59b2ab2eec603a16d671a321 https://www.encodeproject.org/files/ENCFF892XHN/@@download/ENCFF892XHN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF136XWQ bam unfiltered alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF113FFZ, ENCFF807MUK 2095424059 ENCODE Processing Pipeline 8a7480c9a3dd633ad88d3c511908609e https://www.encodeproject.org/files/ENCFF136XWQ/@@download/ENCFF136XWQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF735ODV bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF685OLC 1330282830 ENCODE Processing Pipeline 62ffcc8e6a376a2098677b85550e92bb https://www.encodeproject.org/files/ENCFF735ODV/@@download/ENCFF735ODV.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF855HUE bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF113FFZ, ENCFF643CGH 1631088352 ENCODE Processing Pipeline 9e2c38b8dc2c64449a89ef24194c24d7 https://www.encodeproject.org/files/ENCFF855HUE/@@download/ENCFF855HUE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF257FKU bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF685OLC, ENCFF807MUK 1330040272 ENCODE Processing Pipeline 093eb3f04382cfb0e832c4eed879e0db https://www.encodeproject.org/files/ENCFF257FKU/@@download/ENCFF257FKU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF025OET bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF113FFZ, ENCFF807MUK 1630670024 ENCODE Processing Pipeline bd6c099f2b2dc9bff5a39c4122e63751 https://www.encodeproject.org/files/ENCFF025OET/@@download/ENCFF025OET.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF789LJR bigWig signal p-value ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF735ODV 604142553 ENCODE Processing Pipeline 7b87f4565d9ee7d1020c6aced3e4ba52 https://www.encodeproject.org/files/ENCFF789LJR/@@download/ENCFF789LJR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF547AZU bigWig signal p-value ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF855HUE 626026127 ENCODE Processing Pipeline c6ad14eb6c828308a8f4642c098c399d https://www.encodeproject.org/files/ENCFF547AZU/@@download/ENCFF547AZU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF138SZD bigWig signal p-value ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF735ODV, ENCFF855HUE 667421412 ENCODE Processing Pipeline 8269b1a6b2065e59d2e5532d817b0b5a https://www.encodeproject.org/files/ENCFF138SZD/@@download/ENCFF138SZD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF016LJK bigWig fold change over control ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF735ODV, ENCFF855HUE 903293402 ENCODE Processing Pipeline b442ac801c7dc71b7ff26203336c460c https://www.encodeproject.org/files/ENCFF016LJK/@@download/ENCFF016LJK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF502JZE bigWig fold change over control ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF735ODV 518660334 ENCODE Processing Pipeline bd91c402a18e634422171309acd2cdbd https://www.encodeproject.org/files/ENCFF502JZE/@@download/ENCFF502JZE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF779WRS bigWig fold change over control ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF855HUE 588614901 ENCODE Processing Pipeline 35fe1a87d609b0c95b496b154148aa3b https://www.encodeproject.org/files/ENCFF779WRS/@@download/ENCFF779WRS.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF813CNL bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF735ODV 6458863 ENCODE Processing Pipeline 76e482ebed694534d8c03d0e056352e1 https://www.encodeproject.org/files/ENCFF813CNL/@@download/ENCFF813CNL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF494CAK bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF855HUE 6506846 ENCODE Processing Pipeline 5cf14c510a9afd2fe2f6281db7b2b49d https://www.encodeproject.org/files/ENCFF494CAK/@@download/ENCFF494CAK.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF175WNL bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF735ODV, ENCFF855HUE 6866008 ENCODE Processing Pipeline eaed543347807bd4ffda9b99c46e3bb7 https://www.encodeproject.org/files/ENCFF175WNL/@@download/ENCFF175WNL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF333IAO bigBed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF175WNL 12689161 ENCODE Processing Pipeline 0036ce91cc2f0a917542096a8409bb1b https://www.encodeproject.org/files/ENCFF333IAO/@@download/ENCFF333IAO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685AWI bigBed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF813CNL 12664629 ENCODE Processing Pipeline 382bf7f1a9dee8090ab6c72cfec38e8b https://www.encodeproject.org/files/ENCFF685AWI/@@download/ENCFF685AWI.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF984WBB bigBed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF494CAK 12682812 ENCODE Processing Pipeline c6e0c9398fabbef424233db434a42669 https://www.encodeproject.org/files/ENCFF984WBB/@@download/ENCFF984WBB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF444KHX bed narrowPeak conservative idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF175WNL, ENCFF419RSJ, ENCFF494CAK, ENCFF813CNL 902139 ENCODE Processing Pipeline 8c0c81baabb7fec72de77ef083265728 https://www.encodeproject.org/files/ENCFF444KHX/@@download/ENCFF444KHX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF406NSM bigBed narrowPeak conservative idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF444KHX 1582564 ENCODE Processing Pipeline 1097811ad0ddcaa9201fabfee6843aee https://www.encodeproject.org/files/ENCFF406NSM/@@download/ENCFF406NSM.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF364TOG bed narrowPeak optimal idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF175WNL, ENCFF419RSJ, ENCFF494CAK, ENCFF813CNL 915378 ENCODE Processing Pipeline 794536a29dea7eaf14bc78b8f948047a https://www.encodeproject.org/files/ENCFF364TOG/@@download/ENCFF364TOG.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF687BBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF364TOG 1599704 ENCODE Processing Pipeline 468b94e808330ce5d5a167af8d21ca0e https://www.encodeproject.org/files/ENCFF687BBQ/@@download/ENCFF687BBQ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF629TGP bigWig signal p-value ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF025OET, ENCFF203ABR 1345006540 ENCODE Processing Pipeline d00e76092dcbd8f1bdbd0c6ab576eaca https://www.encodeproject.org/files/ENCFF629TGP/@@download/ENCFF629TGP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF035JYA bigWig signal p-value ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF257FKU 1166997921 ENCODE Processing Pipeline 22c35b43c6f28d778c0aa0c45b83add4 https://www.encodeproject.org/files/ENCFF035JYA/@@download/ENCFF035JYA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681DWB bigWig fold change over control ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF257FKU 964556795 ENCODE Processing Pipeline b9e1644827d0ac02b2e27ee8f827f865 https://www.encodeproject.org/files/ENCFF681DWB/@@download/ENCFF681DWB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF096NSP bigWig signal p-value ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF025OET, ENCFF203ABR, ENCFF257FKU 1342729000 ENCODE Processing Pipeline e16035f106558ed3ce025d7ff8e8ede7 https://www.encodeproject.org/files/ENCFF096NSP/@@download/ENCFF096NSP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF295RWG bigWig fold change over control ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF025OET, ENCFF203ABR 1066010462 ENCODE Processing Pipeline 2785c8ecb83558e8ffe99d2a0e8b18cc https://www.encodeproject.org/files/ENCFF295RWG/@@download/ENCFF295RWG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF890FKS bigWig fold change over control ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF025OET, ENCFF203ABR, ENCFF257FKU 1491879573 ENCODE Processing Pipeline 8415026b0e5f1d18a934f31a1bde2ba0 https://www.encodeproject.org/files/ENCFF890FKS/@@download/ENCFF890FKS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF026GZI bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF257FKU 6666564 ENCODE Processing Pipeline df26a8b53cc302a97c3bc06c156c9591 https://www.encodeproject.org/files/ENCFF026GZI/@@download/ENCFF026GZI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF021GYN bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF025OET, ENCFF203ABR, ENCFF257FKU 6841832 ENCODE Processing Pipeline fc9d78e456eed19c2432114fc51efc6a https://www.encodeproject.org/files/ENCFF021GYN/@@download/ENCFF021GYN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF665EBH bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF025OET, ENCFF203ABR 6693445 ENCODE Processing Pipeline b054c92924fe384acaf073005c0a29d5 https://www.encodeproject.org/files/ENCFF665EBH/@@download/ENCFF665EBH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF739PYD bigBed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF026GZI 12519736 ENCODE Processing Pipeline e377fe784031d603207fcfb3c7d7a19e https://www.encodeproject.org/files/ENCFF739PYD/@@download/ENCFF739PYD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028ZQT bigBed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF665EBH 12521314 ENCODE Processing Pipeline 66de244ef0227db3c5864f88cf0935d6 https://www.encodeproject.org/files/ENCFF028ZQT/@@download/ENCFF028ZQT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF625SOJ bigBed narrowPeak conservative idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF609LFJ 1668006 ENCODE Processing Pipeline 083ef9ef2b19dce3189de735cac27887 https://www.encodeproject.org/files/ENCFF625SOJ/@@download/ENCFF625SOJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF034YYS bigBed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF021GYN 12643111 ENCODE Processing Pipeline ac4489e75dd14986fc4f2d6550c1ab3c https://www.encodeproject.org/files/ENCFF034YYS/@@download/ENCFF034YYS.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF609LFJ bed narrowPeak conservative idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF021GYN, ENCFF026GZI, ENCFF665EBH 927301 ENCODE Processing Pipeline 19417b8b7e876ca39b5a4962fdd221e8 https://www.encodeproject.org/files/ENCFF609LFJ/@@download/ENCFF609LFJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530TAO bed narrowPeak optimal idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF021GYN, ENCFF026GZI, ENCFF665EBH 934828 ENCODE Processing Pipeline d2dc8efce30ab53c23c6694071f80266 https://www.encodeproject.org/files/ENCFF530TAO/@@download/ENCFF530TAO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF266HPK bigBed narrowPeak optimal idr thresholded peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF530TAO 1678520 ENCODE Processing Pipeline 0458e2bc8b7a5e16bb8ed8766d318a6f https://www.encodeproject.org/files/ENCFF266HPK/@@download/ENCFF266HPK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF731JAM fastq reads ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1409768115 Richard Myers, HAIB 63f5e56f3e08d209dc8e6e88bdc33f6f SRA:SRR5331643 https://www.encodeproject.org/files/ENCFF731JAM/@@download/ENCFF731JAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249QKO fastq reads ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1225446607 Richard Myers, HAIB 923c5cb6b159d7a192a9ce68d3815ed6 SRA:SRR5331644 https://www.encodeproject.org/files/ENCFF249QKO/@@download/ENCFF249QKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF330ZRD bam unfiltered alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF249QKO, ENCFF643CGH 1485030842 ENCODE Processing Pipeline 2ae30c5078123a12166fb1ce0cfda498 https://www.encodeproject.org/files/ENCFF330ZRD/@@download/ENCFF330ZRD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF512JVS bam unfiltered alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF731JAM 1670073428 ENCODE Processing Pipeline 6a50735c9c546d769a4a496aaafad5a9 https://www.encodeproject.org/files/ENCFF512JVS/@@download/ENCFF512JVS.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501INZ bam unfiltered alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF249QKO, ENCFF807MUK 1480550022 ENCODE Processing Pipeline f440b570f19b72336b45da0b2d2240de https://www.encodeproject.org/files/ENCFF501INZ/@@download/ENCFF501INZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF477SJK bam unfiltered alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF731JAM, ENCFF807MUK 1666888508 ENCODE Processing Pipeline 8ccf21f532a9f398721e92a870a59ce2 https://www.encodeproject.org/files/ENCFF477SJK/@@download/ENCFF477SJK.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF340NFD bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF249QKO, ENCFF643CGH 1079290340 ENCODE Processing Pipeline bfa665c2361b78b0341c96b25d5834ba https://www.encodeproject.org/files/ENCFF340NFD/@@download/ENCFF340NFD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321FUE bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF249QKO, ENCFF807MUK 1078215807 ENCODE Processing Pipeline 020bdd242e0fa7a0301b129bd4c1ecb2 https://www.encodeproject.org/files/ENCFF321FUE/@@download/ENCFF321FUE.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF884YQM bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF731JAM 1259644167 ENCODE Processing Pipeline 249ee991ace1d8ddf6d8e2fc9db18d1b https://www.encodeproject.org/files/ENCFF884YQM/@@download/ENCFF884YQM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF451EVJ bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF731JAM, ENCFF807MUK 1259136429 ENCODE Processing Pipeline 12b6673e723e8209f9cbd4b37db166e3 https://www.encodeproject.org/files/ENCFF451EVJ/@@download/ENCFF451EVJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF630FGU bigWig signal p-value ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF884YQM 621846709 ENCODE Processing Pipeline e285f5f8b2f13ac17e6d2c7b9cf77b70 https://www.encodeproject.org/files/ENCFF630FGU/@@download/ENCFF630FGU.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF078LOT bigWig signal p-value ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340NFD, ENCFF884YQM 678080757 ENCODE Processing Pipeline 1e88957c9276e2d3097e0552d5c58bca https://www.encodeproject.org/files/ENCFF078LOT/@@download/ENCFF078LOT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF255VIM bigWig fold change over control ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF884YQM 505648597 ENCODE Processing Pipeline f4aa4c8e22fad1357a460e81af474229 https://www.encodeproject.org/files/ENCFF255VIM/@@download/ENCFF255VIM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF009IEM bigWig signal p-value ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF340NFD 494907476 ENCODE Processing Pipeline f2d3ac7ae91c13fe66cb19ee9a79e872 https://www.encodeproject.org/files/ENCFF009IEM/@@download/ENCFF009IEM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF167HRN bigWig fold change over control ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF340NFD 430798836 ENCODE Processing Pipeline 5fbc436d6e5d2eb944c90cb588174069 https://www.encodeproject.org/files/ENCFF167HRN/@@download/ENCFF167HRN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF567JHI bigWig fold change over control ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340NFD, ENCFF884YQM 783019842 ENCODE Processing Pipeline b2fd5ea0eb95275289eb815a59ad6eaf https://www.encodeproject.org/files/ENCFF567JHI/@@download/ENCFF567JHI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF184BHB bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF884YQM 5670547 ENCODE Processing Pipeline 38feec04f46f93a7aefe9302acaea538 https://www.encodeproject.org/files/ENCFF184BHB/@@download/ENCFF184BHB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469MPO bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340NFD, ENCFF884YQM 6175303 ENCODE Processing Pipeline 3ebdf17f43253c613d330d46ba332714 https://www.encodeproject.org/files/ENCFF469MPO/@@download/ENCFF469MPO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF422DMI bigBed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF184BHB 13070523 ENCODE Processing Pipeline 0a0e2b4bd3b95cc72b466a0ae98b6953 https://www.encodeproject.org/files/ENCFF422DMI/@@download/ENCFF422DMI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF943SCQ bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF340NFD 4969250 ENCODE Processing Pipeline 02fb5c2b085e4cba3edcf81756f8bc0d https://www.encodeproject.org/files/ENCFF943SCQ/@@download/ENCFF943SCQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF651MZD bigBed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF943SCQ 10974180 ENCODE Processing Pipeline 54b0e8ffdb1b6b1ad43f130cc9d6e18d https://www.encodeproject.org/files/ENCFF651MZD/@@download/ENCFF651MZD.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF179WWW bigBed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF469MPO 13288716 ENCODE Processing Pipeline f2cbd2d15ef25668fffc7e83382895cf https://www.encodeproject.org/files/ENCFF179WWW/@@download/ENCFF179WWW.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF132QXR bed narrowPeak conservative idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF184BHB, ENCFF419RSJ, ENCFF469MPO, ENCFF943SCQ 373024 ENCODE Processing Pipeline 9a810137e47013f2da2a281a28f1b3bf https://www.encodeproject.org/files/ENCFF132QXR/@@download/ENCFF132QXR.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF185BHD bed narrowPeak optimal idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF184BHB, ENCFF419RSJ, ENCFF469MPO, ENCFF943SCQ 418168 ENCODE Processing Pipeline 18c8b9b04db04bc3173350089d44d721 https://www.encodeproject.org/files/ENCFF185BHD/@@download/ENCFF185BHD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF433GOE bigBed narrowPeak optimal idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF185BHD 858591 ENCODE Processing Pipeline de9beb5e9a0952662686e9afd4f1b116 https://www.encodeproject.org/files/ENCFF433GOE/@@download/ENCFF433GOE.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF041EXL bigBed narrowPeak conservative idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF132QXR 789405 ENCODE Processing Pipeline 3ea0b4db1dbaa9d268b55ee78649bc16 https://www.encodeproject.org/files/ENCFF041EXL/@@download/ENCFF041EXL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF041GLB bigWig signal p-value ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF451EVJ 1155432087 ENCODE Processing Pipeline 76541886b923ed25bd28b327aa05c851 https://www.encodeproject.org/files/ENCFF041GLB/@@download/ENCFF041GLB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF666IIX bigWig signal p-value ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF321FUE 1158645516 ENCODE Processing Pipeline 569dff49adbba3d0ce3035edadff0559 https://www.encodeproject.org/files/ENCFF666IIX/@@download/ENCFF666IIX.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF183CQJ bigWig signal p-value ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF321FUE, ENCFF451EVJ 1271417407 ENCODE Processing Pipeline 470bcb226093c5dbb13ba486ac610425 https://www.encodeproject.org/files/ENCFF183CQJ/@@download/ENCFF183CQJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF871BPJ bigWig fold change over control ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF451EVJ 984902005 ENCODE Processing Pipeline e2e5ba39c30be43c381dc6418abb4cad https://www.encodeproject.org/files/ENCFF871BPJ/@@download/ENCFF871BPJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF407SAH bigWig fold change over control ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF321FUE 787254848 ENCODE Processing Pipeline 947fc10a746da43c08572f6997a0f020 https://www.encodeproject.org/files/ENCFF407SAH/@@download/ENCFF407SAH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF114DWU bigWig fold change over control ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF321FUE, ENCFF451EVJ 1364054063 ENCODE Processing Pipeline bb8fa63008b198b6cae7aad8cabb7e5f https://www.encodeproject.org/files/ENCFF114DWU/@@download/ENCFF114DWU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF676GNF bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF321FUE 5813648 ENCODE Processing Pipeline ab35861a70e53bc286761572377cd7f7 https://www.encodeproject.org/files/ENCFF676GNF/@@download/ENCFF676GNF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF136EWC bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF321FUE, ENCFF451EVJ 6736732 ENCODE Processing Pipeline b79abc11020cc592300708a87c208a4b https://www.encodeproject.org/files/ENCFF136EWC/@@download/ENCFF136EWC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF562QNG bigBed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF480ZUI 13216999 ENCODE Processing Pipeline 2570f4237ace62ab107e6372b0a87977 https://www.encodeproject.org/files/ENCFF562QNG/@@download/ENCFF562QNG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF480ZUI bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF451EVJ 6462431 ENCODE Processing Pipeline 26588437b4708bd22563a17f3b2860f9 https://www.encodeproject.org/files/ENCFF480ZUI/@@download/ENCFF480ZUI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF747JNL bigBed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF676GNF 11280725 ENCODE Processing Pipeline 9ceea7843590620fe5066636d650f63b https://www.encodeproject.org/files/ENCFF747JNL/@@download/ENCFF747JNL.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501PVO bed narrowPeak conservative idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF136EWC, ENCFF480ZUI, ENCFF676GNF 376786 ENCODE Processing Pipeline 5089f19d050816d990ea6a8afe22f244 https://www.encodeproject.org/files/ENCFF501PVO/@@download/ENCFF501PVO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF172QOE bigBed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF136EWC 13361704 ENCODE Processing Pipeline 2c84837b2c087748bfef0f51a5101e27 https://www.encodeproject.org/files/ENCFF172QOE/@@download/ENCFF172QOE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF534IGX bigBed narrowPeak conservative idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF501PVO 665951 ENCODE Processing Pipeline f689d6a33aca1d73875b9a22f97208cb https://www.encodeproject.org/files/ENCFF534IGX/@@download/ENCFF534IGX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF478GBC bed narrowPeak optimal idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF136EWC, ENCFF480ZUI, ENCFF676GNF 416453 ENCODE Processing Pipeline e26e614b8f85a64d8257168f89ab9cbe https://www.encodeproject.org/files/ENCFF478GBC/@@download/ENCFF478GBC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF673ZOU bigBed narrowPeak optimal idr thresholded peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF478GBC 891855 ENCODE Processing Pipeline 460ca87a1d772ab0f3c45aeea9122f68 https://www.encodeproject.org/files/ENCFF673ZOU/@@download/ENCFF673ZOU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF547FDG fastq reads ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF399FYC 2361184544 Michael Snyder, Stanford fa9d5d87f070b64923349449d20727fd SRA:SRR6212827 https://www.encodeproject.org/files/ENCFF547FDG/@@download/ENCFF547FDG.fastq.gz Illumina HiSeq 4000 /files/ENCFF960RVH/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF399FYC fastq reads ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF547FDG 2671061275 Michael Snyder, Stanford 6ad4c2cd5057709e4b12d6860c991e8d SRA:SRR6212827 https://www.encodeproject.org/files/ENCFF399FYC/@@download/ENCFF399FYC.fastq.gz Illumina HiSeq 4000 /files/ENCFF291HPC/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF924BFE bam unfiltered alignments ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF399FYC, ENCFF547FDG, ENCFF643CGH 5006803680 ENCODE Processing Pipeline 252d54a29a559537b84eda201274ace2 https://www.encodeproject.org/files/ENCFF924BFE/@@download/ENCFF924BFE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF185WUG bam alignments ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF399FYC, ENCFF547FDG, ENCFF643CGH 3753267575 ENCODE Processing Pipeline a53d049cffeb7036b3bf1a33bb09a143 https://www.encodeproject.org/files/ENCFF185WUG/@@download/ENCFF185WUG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF517IJJ bam unfiltered alignments ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF399FYC, ENCFF547FDG, ENCFF807MUK 4995697467 ENCODE Processing Pipeline 67650d96c0344dc6e33a1763b0af4dce https://www.encodeproject.org/files/ENCFF517IJJ/@@download/ENCFF517IJJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF204YUH bam alignments ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF399FYC, ENCFF547FDG, ENCFF807MUK 3747257419 ENCODE Processing Pipeline 2e3e6ccd45f853bac097899c50a06424 https://www.encodeproject.org/files/ENCFF204YUH/@@download/ENCFF204YUH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF799HQQ bigWig fold change over control ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF062SIS, ENCFF204YUH 1257610749 ENCODE Processing Pipeline cf24443127f17ec47186cba8a763a057 https://www.encodeproject.org/files/ENCFF799HQQ/@@download/ENCFF799HQQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF546EAO bigWig signal p-value ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF062SIS, ENCFF204YUH 1055008767 ENCODE Processing Pipeline 220d52e0d1fb1965ebb6103eb6f686f9 https://www.encodeproject.org/files/ENCFF546EAO/@@download/ENCFF546EAO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF783GII bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF709PEA 44821 ENCODE Processing Pipeline 8e567081ad20c5e509861ca6374ae814 https://www.encodeproject.org/files/ENCFF783GII/@@download/ENCFF783GII.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF420LUC bigBed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF363MKS 11734097 ENCODE Processing Pipeline ed279ea1c93bb4cfc29eb0c239861cdc https://www.encodeproject.org/files/ENCFF420LUC/@@download/ENCFF420LUC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF363MKS bed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF062SIS, ENCFF204YUH 5172486 ENCODE Processing Pipeline 840c79f7b59445c33208261f59ed8b26 https://www.encodeproject.org/files/ENCFF363MKS/@@download/ENCFF363MKS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF086RKG bigWig signal p-value ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF104DRW, ENCFF185WUG 1182574281 ENCODE Processing Pipeline 52c5a0787381839285462a6fc184b226 https://www.encodeproject.org/files/ENCFF086RKG/@@download/ENCFF086RKG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF709PEA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF363MKS 1604 ENCODE Processing Pipeline fee560dc4ec66e749c4d38567e91028c https://www.encodeproject.org/files/ENCFF709PEA/@@download/ENCFF709PEA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF412AZH bigWig fold change over control ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF104DRW, ENCFF185WUG 1243544538 ENCODE Processing Pipeline 3c90b708431c2cab95dbced0b2ed97c1 https://www.encodeproject.org/files/ENCFF412AZH/@@download/ENCFF412AZH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF296PFP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF399NTP 26646 ENCODE Processing Pipeline 9e96b942db98aac4622d068a919ba80d https://www.encodeproject.org/files/ENCFF296PFP/@@download/ENCFF296PFP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF199GNW bed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF104DRW, ENCFF185WUG 5180595 ENCODE Processing Pipeline 5deda13de56a78d254edd42df7eb5a96 https://www.encodeproject.org/files/ENCFF199GNW/@@download/ENCFF199GNW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF250CUC bigBed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF199GNW 11758238 ENCODE Processing Pipeline 17de06b1468c995a4ef986bed0ccf158 https://www.encodeproject.org/files/ENCFF250CUC/@@download/ENCFF250CUC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF399NTP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF199GNW, ENCFF419RSJ 1952 ENCODE Processing Pipeline 30f3486a3017f87c0743e747dd89eb8b https://www.encodeproject.org/files/ENCFF399NTP/@@download/ENCFF399NTP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF480HVG fastq reads ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 3138118230 Richard Myers, HAIB c09beb38283fb3ba38c5708d65679b7a SRA:SRR5338744 https://www.encodeproject.org/files/ENCFF480HVG/@@download/ENCFF480HVG.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF393OKM fastq reads ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1527383022 Richard Myers, HAIB 230d4c42b0491c2107577fbc6d704e5f SRA:SRR5338743 https://www.encodeproject.org/files/ENCFF393OKM/@@download/ENCFF393OKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF489NGO bam unfiltered alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF393OKM, ENCFF643CGH 1803057924 ENCODE Processing Pipeline 44704dbcf5d8de22201042953fc02a29 https://www.encodeproject.org/files/ENCFF489NGO/@@download/ENCFF489NGO.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF634MYM bam unfiltered alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF393OKM, ENCFF807MUK 1798483696 ENCODE Processing Pipeline c3967b87c0aa50a8b1978100b0cdaeb2 https://www.encodeproject.org/files/ENCFF634MYM/@@download/ENCFF634MYM.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF888HFJ bam unfiltered alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF480HVG, ENCFF643CGH 3489914809 ENCODE Processing Pipeline 8a081d70bfcdb71c95f3063c77ebe2a4 https://www.encodeproject.org/files/ENCFF888HFJ/@@download/ENCFF888HFJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF937KRH bam unfiltered alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF480HVG, ENCFF807MUK 3483747081 ENCODE Processing Pipeline d72e43197a1d3dc2a723043eee6ac348 https://www.encodeproject.org/files/ENCFF937KRH/@@download/ENCFF937KRH.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF656SPV bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF393OKM, ENCFF643CGH 1354694527 ENCODE Processing Pipeline bbc1e8f502766b0d97bf7d499cf119c9 https://www.encodeproject.org/files/ENCFF656SPV/@@download/ENCFF656SPV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF247ZPI bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF480HVG, ENCFF643CGH 2239737346 ENCODE Processing Pipeline e1a6d94775d12050425106e13cab9f39 https://www.encodeproject.org/files/ENCFF247ZPI/@@download/ENCFF247ZPI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF583KIK bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF393OKM, ENCFF807MUK 1353811966 ENCODE Processing Pipeline 99874430d66f641ccfa4f977e41aca33 https://www.encodeproject.org/files/ENCFF583KIK/@@download/ENCFF583KIK.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF748DXR bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF480HVG, ENCFF807MUK 2238764152 ENCODE Processing Pipeline 66225f4538ad464406b1cad0138de8f9 https://www.encodeproject.org/files/ENCFF748DXR/@@download/ENCFF748DXR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF353PDC bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF247ZPI, ENCFF656SPV, ENCFF892OVV 1705258561 ENCODE Processing Pipeline 2280a2ce6d1949eb8f1b57955ce8be3a https://www.encodeproject.org/files/ENCFF353PDC/@@download/ENCFF353PDC.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF440YQD bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF656SPV, ENCFF892OVV 6762658 ENCODE Processing Pipeline 8e0c5df8669a17c40e98193d955da9ec https://www.encodeproject.org/files/ENCFF440YQD/@@download/ENCFF440YQD.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF293LNG bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF247ZPI, ENCFF656SPV, ENCFF892OVV 1743820494 ENCODE Processing Pipeline 6d337c4f425e4dafcc5c72cde58e6f85 https://www.encodeproject.org/files/ENCFF293LNG/@@download/ENCFF293LNG.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF549CHE bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF269ESI 12809657 ENCODE Processing Pipeline 0b8cf5ac0d777933ce8d84dbfa1710ad https://www.encodeproject.org/files/ENCFF549CHE/@@download/ENCFF549CHE.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF269ESI bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF247ZPI, ENCFF656SPV, ENCFF892OVV 7261010 ENCODE Processing Pipeline aef6930054c38fd527d78fa026619d86 https://www.encodeproject.org/files/ENCFF269ESI/@@download/ENCFF269ESI.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF779TFZ bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF440YQD 13225412 ENCODE Processing Pipeline 3ed46b10ba3d40573431cf1bbba68f32 https://www.encodeproject.org/files/ENCFF779TFZ/@@download/ENCFF779TFZ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF646VLT bed narrowPeak optimal idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF269ESI, ENCFF419RSJ, ENCFF440YQD, ENCFF552MVY 384538 ENCODE Processing Pipeline f9ff96d54c4332b9bf4864f45bf32877 https://www.encodeproject.org/files/ENCFF646VLT/@@download/ENCFF646VLT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF514OMV bigBed narrowPeak optimal idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF646VLT 770101 ENCODE Processing Pipeline 6b86572d31d0ba83bca234f5bd989a68 https://www.encodeproject.org/files/ENCFF514OMV/@@download/ENCFF514OMV.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF491DBE bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF656SPV 532107808 ENCODE Processing Pipeline dd00b61e67cb217e4afa255c876cba31 https://www.encodeproject.org/files/ENCFF491DBE/@@download/ENCFF491DBE.bigWig GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF620KZP bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF247ZPI 679740398 ENCODE Processing Pipeline a05ce0e6e0fae1ee00c3c9a068611e22 https://www.encodeproject.org/files/ENCFF620KZP/@@download/ENCFF620KZP.bigWig GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF958CDM bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF247ZPI, ENCFF656SPV 663660247 ENCODE Processing Pipeline 9b393d17842711505bf910e2037c7818 https://www.encodeproject.org/files/ENCFF958CDM/@@download/ENCFF958CDM.bigWig GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF951AXM bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF656SPV 508023574 ENCODE Processing Pipeline 0c20cd697e1722ea5cb45e555e7601b0 https://www.encodeproject.org/files/ENCFF951AXM/@@download/ENCFF951AXM.bigWig GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF819THW bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF247ZPI 766273741 ENCODE Processing Pipeline bd1532f35ee467485e47cc6a6538ccf5 https://www.encodeproject.org/files/ENCFF819THW/@@download/ENCFF819THW.bigWig GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF988EVV bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF247ZPI, ENCFF656SPV 1053738566 ENCODE Processing Pipeline a90eb5a5c52f3b064b02835e3e12f6ed https://www.encodeproject.org/files/ENCFF988EVV/@@download/ENCFF988EVV.bigWig GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF507RBR bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF247ZPI 6899714 ENCODE Processing Pipeline 76f3da775075823da4f76678f48f20a9 https://www.encodeproject.org/files/ENCFF507RBR/@@download/ENCFF507RBR.bed.gz GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF801EHT bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF656SPV 6170546 ENCODE Processing Pipeline 037411a7312d5869c88ce46229e7afed https://www.encodeproject.org/files/ENCFF801EHT/@@download/ENCFF801EHT.bed.gz GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF048YCA bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF247ZPI, ENCFF656SPV 7125426 ENCODE Processing Pipeline 035c5eb1a9aeb26f6f4e0cd216b8f00b https://www.encodeproject.org/files/ENCFF048YCA/@@download/ENCFF048YCA.bed.gz GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF940PES bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF507RBR 12769569 ENCODE Processing Pipeline e68f93e31be58fba387aa14c9862deea https://www.encodeproject.org/files/ENCFF940PES/@@download/ENCFF940PES.bigBed GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF086ZJP bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF801EHT 13187447 ENCODE Processing Pipeline fceade1c2194ad18f549e6baf72e6d1b https://www.encodeproject.org/files/ENCFF086ZJP/@@download/ENCFF086ZJP.bigBed GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF427WDA bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF048YCA 12821139 ENCODE Processing Pipeline 604d400bff15a13baaa29ac5f8f620a0 https://www.encodeproject.org/files/ENCFF427WDA/@@download/ENCFF427WDA.bigBed GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF558FHZ bigBed narrowPeak conservative idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF163ZBA 868695 ENCODE Processing Pipeline 22ab3d6fffbfa7c58d403965a9657cec https://www.encodeproject.org/files/ENCFF558FHZ/@@download/ENCFF558FHZ.bigBed GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF163ZBA bed narrowPeak conservative idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF048YCA, ENCFF419RSJ, ENCFF507RBR, ENCFF801EHT 381278 ENCODE Processing Pipeline 59b830b9c1ca14b289b402aeb6c7d818 https://www.encodeproject.org/files/ENCFF163ZBA/@@download/ENCFF163ZBA.bed.gz GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF160XKY bed narrowPeak optimal idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF048YCA, ENCFF419RSJ, ENCFF507RBR, ENCFF801EHT 414501 ENCODE Processing Pipeline 6024166e8b62bdc27a0ae6b069b29101 https://www.encodeproject.org/files/ENCFF160XKY/@@download/ENCFF160XKY.bed.gz GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF202IOJ bigBed narrowPeak optimal idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF160XKY 932091 ENCODE Processing Pipeline d790a649cb8c1fcce29ab5b156acb95f https://www.encodeproject.org/files/ENCFF202IOJ/@@download/ENCFF202IOJ.bigBed GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF465DCQ bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF748DXR 1309635110 ENCODE Processing Pipeline 0613c9a57aa06225a73304c94b788f09 https://www.encodeproject.org/files/ENCFF465DCQ/@@download/ENCFF465DCQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF016BHP bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF583KIK 1319450293 ENCODE Processing Pipeline 2290157a985da049843b8d7b1f86dd9c https://www.encodeproject.org/files/ENCFF016BHP/@@download/ENCFF016BHP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF306QTI bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF583KIK, ENCFF748DXR 1725879864 ENCODE Processing Pipeline 244957569aa20f075ba956ef6ac4d314 https://www.encodeproject.org/files/ENCFF306QTI/@@download/ENCFF306QTI.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF759NVI bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF748DXR 1353043990 ENCODE Processing Pipeline 1114030740d1a1190be6d02274a4c4d8 https://www.encodeproject.org/files/ENCFF759NVI/@@download/ENCFF759NVI.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF289NKY bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF583KIK 928063599 ENCODE Processing Pipeline 7a5c63f5a1e92760e3e4d14cc22abec7 https://www.encodeproject.org/files/ENCFF289NKY/@@download/ENCFF289NKY.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF375KVX bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF583KIK, ENCFF748DXR 1740921937 ENCODE Processing Pipeline 98be838180f76942fd0204aa591851d4 https://www.encodeproject.org/files/ENCFF375KVX/@@download/ENCFF375KVX.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF438FDS bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF748DXR 7141424 ENCODE Processing Pipeline def7ee0748db2c0c01a8537acbac52ad https://www.encodeproject.org/files/ENCFF438FDS/@@download/ENCFF438FDS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF458LZF bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF583KIK 6720633 ENCODE Processing Pipeline 10cdbd57a15feec19ece4595e01778ce https://www.encodeproject.org/files/ENCFF458LZF/@@download/ENCFF458LZF.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF083CKI bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF438FDS 12674492 ENCODE Processing Pipeline a04007102bd010166c95f82f5cf232f5 https://www.encodeproject.org/files/ENCFF083CKI/@@download/ENCFF083CKI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF076AFD bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF583KIK, ENCFF748DXR 7178942 ENCODE Processing Pipeline 0bbe40afbd2e12ab29dde1e5eb0d8e8b https://www.encodeproject.org/files/ENCFF076AFD/@@download/ENCFF076AFD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF807EDA bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF458LZF 13116169 ENCODE Processing Pipeline 67240ce379d73cf57c4fb3dbe2d0811a https://www.encodeproject.org/files/ENCFF807EDA/@@download/ENCFF807EDA.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF901RSE bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF076AFD 12695709 ENCODE Processing Pipeline 1f7687dd4cc2eb64a57704ce72b20c35 https://www.encodeproject.org/files/ENCFF901RSE/@@download/ENCFF901RSE.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF185VZD bigBed narrowPeak conservative idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF362XYI 718886 ENCODE Processing Pipeline 61b75700dca518b1603261ebd42e1b40 https://www.encodeproject.org/files/ENCFF185VZD/@@download/ENCFF185VZD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF362XYI bed narrowPeak conservative idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF076AFD, ENCFF438FDS, ENCFF458LZF 353371 ENCODE Processing Pipeline 4ee682a4abf88c5832ef855bbdac2d10 https://www.encodeproject.org/files/ENCFF362XYI/@@download/ENCFF362XYI.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF953INM bed narrowPeak optimal idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF076AFD, ENCFF438FDS, ENCFF458LZF 356935 ENCODE Processing Pipeline e8cb5d27a11901e804834fc3efb65c1a https://www.encodeproject.org/files/ENCFF953INM/@@download/ENCFF953INM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF448REB bigBed narrowPeak optimal idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF953INM 726868 ENCODE Processing Pipeline 9efeb4d63f06753dd90ca4a6a1d43b8a https://www.encodeproject.org/files/ENCFF448REB/@@download/ENCFF448REB.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF166LPT bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF247ZPI, ENCFF892OVV 1338756328 ENCODE Processing Pipeline 510cc9f293e9add0277d241b7aab24f5 https://www.encodeproject.org/files/ENCFF166LPT/@@download/ENCFF166LPT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF659ZJX bigBed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF552MVY 12728624 ENCODE Processing Pipeline 968900d1a45f7ab5bf1512ef100f4431 https://www.encodeproject.org/files/ENCFF659ZJX/@@download/ENCFF659ZJX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF349WWK bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF656SPV, ENCFF892OVV 1162939871 ENCODE Processing Pipeline b5dfa279ad77da8214a093c190f92983 https://www.encodeproject.org/files/ENCFF349WWK/@@download/ENCFF349WWK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF444UIA bigWig fold change over control ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF656SPV, ENCFF892OVV 930885921 ENCODE Processing Pipeline 26f8a2809625bea78e20d07c559289ca https://www.encodeproject.org/files/ENCFF444UIA/@@download/ENCFF444UIA.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF552MVY bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF247ZPI, ENCFF892OVV 7173115 ENCODE Processing Pipeline 0e99c1cf57170153620a9d445f6043dc https://www.encodeproject.org/files/ENCFF552MVY/@@download/ENCFF552MVY.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF135KRN bed narrowPeak conservative idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF269ESI, ENCFF419RSJ, ENCFF440YQD, ENCFF552MVY 374016 ENCODE Processing Pipeline 39f8cabbd57cac236719e0e73d335d03 https://www.encodeproject.org/files/ENCFF135KRN/@@download/ENCFF135KRN.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF285MDA bigWig signal p-value ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF247ZPI, ENCFF892OVV 1441120760 ENCODE Processing Pipeline 74a875e8a48e98822ed4df2208706301 https://www.encodeproject.org/files/ENCFF285MDA/@@download/ENCFF285MDA.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF789PGF bigBed narrowPeak conservative idr thresholded peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF135KRN 913888 ENCODE Processing Pipeline 0c2c05ba638b29ab2007db8af4f31fc8 https://www.encodeproject.org/files/ENCFF789PGF/@@download/ENCFF789PGF.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF834PKM fastq reads ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF476POX 1469895933 Michael Snyder, Stanford 949a682a22f8f619e576d0903445f9b4 SRA:SRR6214396 https://www.encodeproject.org/files/ENCFF834PKM/@@download/ENCFF834PKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF988GJO/ released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF476POX fastq reads ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF834PKM 1457190071 Michael Snyder, Stanford 0eb6ac55b124391c335e5ee7087b5d0b SRA:SRR6214396 https://www.encodeproject.org/files/ENCFF476POX/@@download/ENCFF476POX.fastq.gz Illumina HiSeq 2000 /files/ENCFF931GEH/ released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF485QSR bam alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF476POX, ENCFF807MUK, ENCFF834PKM 2398057073 ENCODE Processing Pipeline 5dc6d5cbc115256c781b2536e28c1197 https://www.encodeproject.org/files/ENCFF485QSR/@@download/ENCFF485QSR.bam hg19 archived control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF008NBB fastq reads ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF808IIT 4422626383 Michael Snyder, Stanford 7287ed5b83ea1b0895ec1ef32dee2299 SRA:SRR6214397 https://www.encodeproject.org/files/ENCFF008NBB/@@download/ENCFF008NBB.fastq.gz Illumina HiSeq 2000 /files/ENCFF931GEH/ released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF808IIT fastq reads ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF008NBB 4488146529 Michael Snyder, Stanford 99c6025ff1b9f2c282503ea0ae5823c2 SRA:SRR6214397 https://www.encodeproject.org/files/ENCFF808IIT/@@download/ENCFF808IIT.fastq.gz Illumina HiSeq 2000 /files/ENCFF988GJO/ released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF779DOP bam alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF008NBB, ENCFF476POX, ENCFF807MUK, ENCFF808IIT, ENCFF834PKM 5443528396 ENCODE Processing Pipeline 90a287222be0bb61ca4111b94e742226 https://www.encodeproject.org/files/ENCFF779DOP/@@download/ENCFF779DOP.bam hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF957FJF bam unfiltered alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF008NBB, ENCFF476POX, ENCFF807MUK, ENCFF808IIT, ENCFF834PKM 10539944827 ENCODE Processing Pipeline 7a5ecb4f74ad6f8a57b3dff29d48ec62 https://www.encodeproject.org/files/ENCFF957FJF/@@download/ENCFF957FJF.bam hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF836VFS bam unfiltered alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF008NBB, ENCFF476POX, ENCFF643CGH, ENCFF808IIT, ENCFF834PKM 10529364054 ENCODE Processing Pipeline cd38d3855392dada10fc62e35b7a123a https://www.encodeproject.org/files/ENCFF836VFS/@@download/ENCFF836VFS.bam GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF078USH bam alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF008NBB, ENCFF476POX, ENCFF643CGH, ENCFF808IIT, ENCFF834PKM 5450223938 ENCODE Processing Pipeline 12c3bbc066fbd546963f554969d99225 https://www.encodeproject.org/files/ENCFF078USH/@@download/ENCFF078USH.bam GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF305JZY bigBed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF657HTU 11261070 ENCODE Processing Pipeline 5c2ddc4914ecaab32e6f7c1fd4df7aea https://www.encodeproject.org/files/ENCFF305JZY/@@download/ENCFF305JZY.bigBed hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF657HTU bed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016BGY, ENCFF779DOP 5033900 ENCODE Processing Pipeline b55057f4521fac98c567c3be33165252 https://www.encodeproject.org/files/ENCFF657HTU/@@download/ENCFF657HTU.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF639VZT bigWig signal p-value ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016BGY, ENCFF779DOP 619792262 ENCODE Processing Pipeline 4fea4504e92382bd2828fc4ef8326fdf https://www.encodeproject.org/files/ENCFF639VZT/@@download/ENCFF639VZT.bigWig hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF051USR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF657HTU 183 ENCODE Processing Pipeline d1a604ce6f424996f98e49114e79d3a7 https://www.encodeproject.org/files/ENCFF051USR/@@download/ENCFF051USR.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF653ZVS bigWig fold change over control ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016BGY, ENCFF779DOP 1045379125 ENCODE Processing Pipeline 82ab0eb1caadd991d2fcec768623647e https://www.encodeproject.org/files/ENCFF653ZVS/@@download/ENCFF653ZVS.bigWig hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF794EQH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF051USR 14329 ENCODE Processing Pipeline 4825cceb30f0fd1897bd954007862097 https://www.encodeproject.org/files/ENCFF794EQH/@@download/ENCFF794EQH.bigBed hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF087KQK bigBed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF043PIW 11282657 ENCODE Processing Pipeline db19ca70a7097c4fd8ea41eb29ffe3e6 https://www.encodeproject.org/files/ENCFF087KQK/@@download/ENCFF087KQK.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF496YPU bigWig fold change over control ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF078USH, ENCFF354PAM 1044043962 ENCODE Processing Pipeline 8dcad1ba8e6e4fc1acdcc25f1642cbef https://www.encodeproject.org/files/ENCFF496YPU/@@download/ENCFF496YPU.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF852XXX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF719VDM 21775 ENCODE Processing Pipeline 9b4ee914fd4c2c91cca63f581b5fb2d6 https://www.encodeproject.org/files/ENCFF852XXX/@@download/ENCFF852XXX.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF479OQY bigWig signal p-value ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF078USH, ENCFF354PAM 618023227 ENCODE Processing Pipeline d193e83ea74026eff84996ef66dc52e7 https://www.encodeproject.org/files/ENCFF479OQY/@@download/ENCFF479OQY.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF043PIW bed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF078USH, ENCFF354PAM 5034487 ENCODE Processing Pipeline 7ca47959700b832bd0a26f2d19d85371 https://www.encodeproject.org/files/ENCFF043PIW/@@download/ENCFF043PIW.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF719VDM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF043PIW, ENCFF419RSJ 504 ENCODE Processing Pipeline 9a3e6c87c2e24bd5e1077abacff82e17 https://www.encodeproject.org/files/ENCFF719VDM/@@download/ENCFF719VDM.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF210EIU fastq reads ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 704000169 Xiang-Dong Fu, UCSD 2d590d43620d441aea6c5d8d4d3a9f08 SRA:SRR6214350 https://www.encodeproject.org/files/ENCFF210EIU/@@download/ENCFF210EIU.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF586AFS fastq reads ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 823173625 Xiang-Dong Fu, UCSD 5beb058bbdb58adef454dc53efd9b4cb SRA:SRR6214351 https://www.encodeproject.org/files/ENCFF586AFS/@@download/ENCFF586AFS.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF621SFJ bam unfiltered alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF210EIU, ENCFF807MUK 950579399 ENCODE Processing Pipeline eb2dfb4e94ad6be0fc32d01486ade278 https://www.encodeproject.org/files/ENCFF621SFJ/@@download/ENCFF621SFJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF491RBM bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF210EIU, ENCFF807MUK 533056489 ENCODE Processing Pipeline 1c68c9b0b974b8380b2625f9be6419a6 https://www.encodeproject.org/files/ENCFF491RBM/@@download/ENCFF491RBM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF881XYD bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF210EIU, ENCFF643CGH 532409359 ENCODE Processing Pipeline e0c6a4411a69f39524e245630f2833ca https://www.encodeproject.org/files/ENCFF881XYD/@@download/ENCFF881XYD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF045AXJ bam unfiltered alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF586AFS, ENCFF643CGH 1113387496 ENCODE Processing Pipeline f77fbf0d515456b834a4744b6000daf8 https://www.encodeproject.org/files/ENCFF045AXJ/@@download/ENCFF045AXJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF546DJZ bam unfiltered alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF210EIU, ENCFF643CGH 953865355 ENCODE Processing Pipeline b86be1f1f6000ae6e5dd852b49a61188 https://www.encodeproject.org/files/ENCFF546DJZ/@@download/ENCFF546DJZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF550BKL bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF586AFS, ENCFF807MUK 627635473 ENCODE Processing Pipeline de4054ffd79adb0e9a1aa7e07e595543 https://www.encodeproject.org/files/ENCFF550BKL/@@download/ENCFF550BKL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF740GLK bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF586AFS, ENCFF643CGH 626902416 ENCODE Processing Pipeline 0a5937aea1d420d70137f1aa7d6d19eb https://www.encodeproject.org/files/ENCFF740GLK/@@download/ENCFF740GLK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF615FNO bam unfiltered alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF586AFS, ENCFF807MUK 1109877773 ENCODE Processing Pipeline 5ccaf2baf9a43a26c719cfc0e0cfe9ef https://www.encodeproject.org/files/ENCFF615FNO/@@download/ENCFF615FNO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF794ONM bigWig signal p-value ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF550BKL 466527345 ENCODE Processing Pipeline d260f38e4303544b58c4decf08b4d3ef https://www.encodeproject.org/files/ENCFF794ONM/@@download/ENCFF794ONM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF050SKN bigWig fold change over control ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF491RBM, ENCFF578XGS 336574443 ENCODE Processing Pipeline e5d17a576431728c42a6cc91e71b975c https://www.encodeproject.org/files/ENCFF050SKN/@@download/ENCFF050SKN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF947PDR bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF491RBM, ENCFF550BKL, ENCFF578XGS 7053952 ENCODE Processing Pipeline 3fb864860233779cc5d5a723d9c87e44 https://www.encodeproject.org/files/ENCFF947PDR/@@download/ENCFF947PDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF921HUN bigWig signal p-value ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF491RBM, ENCFF578XGS 523588994 ENCODE Processing Pipeline d5150612762f7df318c0371184dd2c02 https://www.encodeproject.org/files/ENCFF921HUN/@@download/ENCFF921HUN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF205VRL bigWig fold change over control ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF550BKL 362273561 ENCODE Processing Pipeline 129eb52479e44373fc22c53b1f429825 https://www.encodeproject.org/files/ENCFF205VRL/@@download/ENCFF205VRL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF143SCA bigWig signal p-value ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF491RBM, ENCFF550BKL, ENCFF578XGS 817558130 ENCODE Processing Pipeline 65715c94d0101478b2a11443562d220f https://www.encodeproject.org/files/ENCFF143SCA/@@download/ENCFF143SCA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF311ZPR bigWig fold change over control ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF491RBM, ENCFF550BKL, ENCFF578XGS 840058401 ENCODE Processing Pipeline 2447e2da1d6a2431456a932ceb606d62 https://www.encodeproject.org/files/ENCFF311ZPR/@@download/ENCFF311ZPR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF429PCJ bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF550BKL 6097462 ENCODE Processing Pipeline 18c242d6c26493c86f0086b8cf848e64 https://www.encodeproject.org/files/ENCFF429PCJ/@@download/ENCFF429PCJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF466HRK bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF491RBM, ENCFF578XGS 5873802 ENCODE Processing Pipeline 446898d27f7b5c16794a553acaa6cd89 https://www.encodeproject.org/files/ENCFF466HRK/@@download/ENCFF466HRK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF396MRU bigBed narrowPeak conservative idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF749HXW 244025 ENCODE Processing Pipeline 54c735c73babe489a3983defbf54b8f3 https://www.encodeproject.org/files/ENCFF396MRU/@@download/ENCFF396MRU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF701EPB bigBed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF429PCJ 12837010 ENCODE Processing Pipeline acadef5b55a70651f7b6f6c1923a954c https://www.encodeproject.org/files/ENCFF701EPB/@@download/ENCFF701EPB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF625IZR bigBed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF466HRK 12991320 ENCODE Processing Pipeline 1f52440721fad39900f28b8eda50749c https://www.encodeproject.org/files/ENCFF625IZR/@@download/ENCFF625IZR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF055MVR bed narrowPeak optimal idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF429PCJ, ENCFF466HRK, ENCFF947PDR 108075 ENCODE Processing Pipeline f2824ea37b440bba9e73ddddbafbf472 https://www.encodeproject.org/files/ENCFF055MVR/@@download/ENCFF055MVR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF845LTZ bigBed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF947PDR 12799912 ENCODE Processing Pipeline 4b56758cdd57f1d062fa1faf43e2d83c https://www.encodeproject.org/files/ENCFF845LTZ/@@download/ENCFF845LTZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF749HXW bed narrowPeak conservative idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF429PCJ, ENCFF466HRK, ENCFF947PDR 89376 ENCODE Processing Pipeline 126d643a846a070bf3b5f32af08f7ec2 https://www.encodeproject.org/files/ENCFF749HXW/@@download/ENCFF749HXW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF705LOO bigBed narrowPeak optimal idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF055MVR 277648 ENCODE Processing Pipeline 7d716b2a3babd64c93dfaaa3f99423ab https://www.encodeproject.org/files/ENCFF705LOO/@@download/ENCFF705LOO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF165QYR bigWig fold change over control ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF740GLK 358385114 ENCODE Processing Pipeline 966eb0aebf4a8c22945fbb80096901a8 https://www.encodeproject.org/files/ENCFF165QYR/@@download/ENCFF165QYR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF696MJA bigWig signal p-value ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF740GLK 455847623 ENCODE Processing Pipeline 3b5ec5174be2a512b94936f686c36e27 https://www.encodeproject.org/files/ENCFF696MJA/@@download/ENCFF696MJA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF825GMZ bigBed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF880BHR 13003486 ENCODE Processing Pipeline de5fcd284927df4bc8ba89e3c9131919 https://www.encodeproject.org/files/ENCFF825GMZ/@@download/ENCFF825GMZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF329EIJ bigWig signal p-value ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF881XYD 542436268 ENCODE Processing Pipeline b4ceb19c23e6413f789a1ab7ea0141ae https://www.encodeproject.org/files/ENCFF329EIJ/@@download/ENCFF329EIJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF630NXC bigWig signal p-value ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF740GLK, ENCFF881XYD 930944925 ENCODE Processing Pipeline 812d4fb694f1dc82b604259ef2386402 https://www.encodeproject.org/files/ENCFF630NXC/@@download/ENCFF630NXC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF880BHR bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF881XYD 5783753 ENCODE Processing Pipeline f34687da704dd27199f9c8cdc8589508 https://www.encodeproject.org/files/ENCFF880BHR/@@download/ENCFF880BHR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF942SJF bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF740GLK, ENCFF881XYD 7056393 ENCODE Processing Pipeline a14d5ba7dd6ebe275d2b96b83035be2c https://www.encodeproject.org/files/ENCFF942SJF/@@download/ENCFF942SJF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF931FHX bigBed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF459BPD 12855378 ENCODE Processing Pipeline 4e4b04c5399a17207c83e56d9ca29571 https://www.encodeproject.org/files/ENCFF931FHX/@@download/ENCFF931FHX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF886AIM bed narrowPeak conservative idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF459BPD, ENCFF880BHR, ENCFF942SJF 96210 ENCODE Processing Pipeline fcbc5c1ded54f8ac4d58b46dde8fa0ae https://www.encodeproject.org/files/ENCFF886AIM/@@download/ENCFF886AIM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF190TFD bigBed narrowPeak conservative idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF886AIM 258039 ENCODE Processing Pipeline a9c4ca20497b34a9603b9a66d1a0137e https://www.encodeproject.org/files/ENCFF190TFD/@@download/ENCFF190TFD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF034KUO bed narrowPeak optimal idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF459BPD, ENCFF880BHR, ENCFF942SJF 118077 ENCODE Processing Pipeline 0886519e60906a7f5ff4574a84860568 https://www.encodeproject.org/files/ENCFF034KUO/@@download/ENCFF034KUO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF177JNT bigWig fold change over control ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF881XYD 352833583 ENCODE Processing Pipeline eaa84b296ff5a0403c84c83e071b89cb https://www.encodeproject.org/files/ENCFF177JNT/@@download/ENCFF177JNT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF242XQC bigWig fold change over control ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF740GLK, ENCFF881XYD 817180119 ENCODE Processing Pipeline 446176a7b9dea51d16e36fd6456f531c https://www.encodeproject.org/files/ENCFF242XQC/@@download/ENCFF242XQC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF730XII bigBed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF942SJF 12850848 ENCODE Processing Pipeline 143fe69ad49ee0899cf943b2b380e8d3 https://www.encodeproject.org/files/ENCFF730XII/@@download/ENCFF730XII.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF459BPD bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF740GLK 6109238 ENCODE Processing Pipeline 5a0d80327110350ac46f94776c784a4f https://www.encodeproject.org/files/ENCFF459BPD/@@download/ENCFF459BPD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF548XGJ bigBed narrowPeak optimal idr thresholded peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF034KUO 296260 ENCODE Processing Pipeline e4aaec0c010678778be5d8ec9482b02d https://www.encodeproject.org/files/ENCFF548XGJ/@@download/ENCFF548XGJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF407HGX fastq reads ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 636402026 Xiang-Dong Fu, UCSD 5d83a1a80fab124d95ac02c274d446e3 SRA:SRR6214364 https://www.encodeproject.org/files/ENCFF407HGX/@@download/ENCFF407HGX.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth ENCFF192STJ fastq reads ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 612183490 Xiang-Dong Fu, UCSD d5b6321dff046b40882aeb374ae3ab09 SRA:SRR6214363 https://www.encodeproject.org/files/ENCFF192STJ/@@download/ENCFF192STJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF624RFV bam unfiltered alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF192STJ, ENCFF643CGH 804893815 ENCODE Processing Pipeline d30be032873e8a0d94c4cb6c671b478f https://www.encodeproject.org/files/ENCFF624RFV/@@download/ENCFF624RFV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF854PTN bam unfiltered alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF407HGX, ENCFF807MUK 827447903 ENCODE Processing Pipeline 81681299cd7bf0778f21d01a4a4f848f https://www.encodeproject.org/files/ENCFF854PTN/@@download/ENCFF854PTN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF276ZRS bam unfiltered alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF192STJ, ENCFF807MUK 802243405 ENCODE Processing Pipeline 8824e5a2724dd2a2891f7503476a7d62 https://www.encodeproject.org/files/ENCFF276ZRS/@@download/ENCFF276ZRS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF242FNL bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF192STJ, ENCFF643CGH 453683376 ENCODE Processing Pipeline a4293a515c6d760c9c1362f3bfd177e7 https://www.encodeproject.org/files/ENCFF242FNL/@@download/ENCFF242FNL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF769WSP bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF407HGX, ENCFF807MUK 460398364 ENCODE Processing Pipeline 89d570c5d180d78739327c9ce8f91525 https://www.encodeproject.org/files/ENCFF769WSP/@@download/ENCFF769WSP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF117ALF bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF192STJ, ENCFF807MUK 454261050 ENCODE Processing Pipeline c8c5d322fada7712c17245c0090b8ced https://www.encodeproject.org/files/ENCFF117ALF/@@download/ENCFF117ALF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF349HMO bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF407HGX, ENCFF643CGH 459803307 ENCODE Processing Pipeline 8d843a3272f924f1100a1c13aa47402e https://www.encodeproject.org/files/ENCFF349HMO/@@download/ENCFF349HMO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF599NPN bam unfiltered alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF407HGX, ENCFF643CGH 829886670 ENCODE Processing Pipeline 1174eb2c6c796e08a1429cf489e9e114 https://www.encodeproject.org/files/ENCFF599NPN/@@download/ENCFF599NPN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF978KHG bigWig signal p-value ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF769WSP 485219954 ENCODE Processing Pipeline f33bfc69c4ae33bf0144eb8680ad393f https://www.encodeproject.org/files/ENCFF978KHG/@@download/ENCFF978KHG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF893FLV bigWig signal p-value ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF117ALF, ENCFF375WCZ, ENCFF578XGS, ENCFF769WSP 880678778 ENCODE Processing Pipeline 8a71e243c87c8ab2f0dd6a8c30b9608b https://www.encodeproject.org/files/ENCFF893FLV/@@download/ENCFF893FLV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF293HYG bigWig fold change over control ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF117ALF, ENCFF578XGS 301744636 ENCODE Processing Pipeline 99d219f892181f393efb811c90f367ae https://www.encodeproject.org/files/ENCFF293HYG/@@download/ENCFF293HYG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF138FLC bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF117ALF, ENCFF578XGS 5346050 ENCODE Processing Pipeline b3f8ee63d7fb34911bfa8bd67b16cbb7 https://www.encodeproject.org/files/ENCFF138FLC/@@download/ENCFF138FLC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF589WLF bigWig fold change over control ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF769WSP 280219496 ENCODE Processing Pipeline 38e12bfca5bc6dcec9167f1692ad8f77 https://www.encodeproject.org/files/ENCFF589WLF/@@download/ENCFF589WLF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF680PCI bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF769WSP 5525149 ENCODE Processing Pipeline 64484b130f50b1571b4e074170eefb80 https://www.encodeproject.org/files/ENCFF680PCI/@@download/ENCFF680PCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF047PJE bigWig signal p-value ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF117ALF, ENCFF578XGS 469841599 ENCODE Processing Pipeline d3d3ad430bdb3373dfcbeae3d5ae9fee https://www.encodeproject.org/files/ENCFF047PJE/@@download/ENCFF047PJE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF442EYE bigWig fold change over control ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF117ALF, ENCFF375WCZ, ENCFF578XGS, ENCFF769WSP 690165652 ENCODE Processing Pipeline 670d05e350b33eda05d080ab9f14099b https://www.encodeproject.org/files/ENCFF442EYE/@@download/ENCFF442EYE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF295TGG bigBed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF138FLC 13099522 ENCODE Processing Pipeline 48d01de56b7420d065191afad161b91a https://www.encodeproject.org/files/ENCFF295TGG/@@download/ENCFF295TGG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF306RGV bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF117ALF, ENCFF375WCZ, ENCFF578XGS, ENCFF769WSP 6571107 ENCODE Processing Pipeline a1a4eb94daa1a00d474c31469ba96120 https://www.encodeproject.org/files/ENCFF306RGV/@@download/ENCFF306RGV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF963WGQ bigBed narrowPeak optimal idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF468MIF 467080 ENCODE Processing Pipeline 18d0f6d46cb4002356c0c76caa33286a https://www.encodeproject.org/files/ENCFF963WGQ/@@download/ENCFF963WGQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF786JWV bigBed narrowPeak conservative idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF180HWU 413145 ENCODE Processing Pipeline 0f8bf8f3135a1a4e18e454b16e6c01a6 https://www.encodeproject.org/files/ENCFF786JWV/@@download/ENCFF786JWV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF247TOB bigBed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF680PCI 12952107 ENCODE Processing Pipeline 05cf71e2c1bfd6cd5a03e52a2d04c8d3 https://www.encodeproject.org/files/ENCFF247TOB/@@download/ENCFF247TOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF193RIA bigBed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF306RGV 13141521 ENCODE Processing Pipeline 1c95d25f0cda831530b8ecc360b27971 https://www.encodeproject.org/files/ENCFF193RIA/@@download/ENCFF193RIA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF180HWU bed narrowPeak conservative idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF138FLC, ENCFF306RGV, ENCFF680PCI 176782 ENCODE Processing Pipeline bb955b37aaee221b605a64fb7381c019 https://www.encodeproject.org/files/ENCFF180HWU/@@download/ENCFF180HWU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF468MIF bed narrowPeak optimal idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF138FLC, ENCFF306RGV, ENCFF680PCI 210709 ENCODE Processing Pipeline ba9f061af426f9599bbfde4ae1061df9 https://www.encodeproject.org/files/ENCFF468MIF/@@download/ENCFF468MIF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF120PTF bigWig fold change over control ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253UKR, ENCFF349HMO 279340097 ENCODE Processing Pipeline d89edb68c197a16dfae910db82ca6f13 https://www.encodeproject.org/files/ENCFF120PTF/@@download/ENCFF120PTF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF485BHW bigWig signal p-value ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253UKR, ENCFF349HMO 410445399 ENCODE Processing Pipeline 592e392e6c2d9c7f5ed2ae08edf9d0e3 https://www.encodeproject.org/files/ENCFF485BHW/@@download/ENCFF485BHW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF289JYW bigWig signal p-value ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF242FNL, ENCFF279QEN 440646697 ENCODE Processing Pipeline 336f09ebcd47d7849b4b407b4ed4090f https://www.encodeproject.org/files/ENCFF289JYW/@@download/ENCFF289JYW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF974JOW bigWig fold change over control ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF242FNL, ENCFF279QEN 300313636 ENCODE Processing Pipeline 79993670217ccaec36409bd93be551fa https://www.encodeproject.org/files/ENCFF974JOW/@@download/ENCFF974JOW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF332CBV bigWig fold change over control ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF242FNL, ENCFF253UKR, ENCFF279QEN, ENCFF349HMO 691071285 ENCODE Processing Pipeline 7463020c399933a4ea2031090ebd4f39 https://www.encodeproject.org/files/ENCFF332CBV/@@download/ENCFF332CBV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF140WYD bigWig signal p-value ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF242FNL, ENCFF253UKR, ENCFF279QEN, ENCFF349HMO 802094327 ENCODE Processing Pipeline 83d11eeb9f7a736d7684d4646684614d https://www.encodeproject.org/files/ENCFF140WYD/@@download/ENCFF140WYD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF055YWZ bigBed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF667XHN 12957515 ENCODE Processing Pipeline 2823de487f44b3e545cd1b34f2c87fd5 https://www.encodeproject.org/files/ENCFF055YWZ/@@download/ENCFF055YWZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF088BLN bigBed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF570WYD 13071605 ENCODE Processing Pipeline bbea9d5555d3749edf1e92ba6ff94ccf https://www.encodeproject.org/files/ENCFF088BLN/@@download/ENCFF088BLN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF570WYD bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF242FNL, ENCFF279QEN 5263481 ENCODE Processing Pipeline 538e2b6814f7991f1b14f6eea2a919c7 https://www.encodeproject.org/files/ENCFF570WYD/@@download/ENCFF570WYD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF372HNF bigBed narrowPeak conservative idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF183DMM 346356 ENCODE Processing Pipeline a6da9f4ae8fe690c65e49c244acd01c4 https://www.encodeproject.org/files/ENCFF372HNF/@@download/ENCFF372HNF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF487WAN bed narrowPeak optimal idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF334RXJ, ENCFF419RSJ, ENCFF570WYD, ENCFF667XHN 213913 ENCODE Processing Pipeline 4db3b3de2964cef541dfdd0c8a8931ab https://www.encodeproject.org/files/ENCFF487WAN/@@download/ENCFF487WAN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF667XHN bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253UKR, ENCFF349HMO 5487340 ENCODE Processing Pipeline fa4792a3402bb133dc41b8e32befc0b0 https://www.encodeproject.org/files/ENCFF667XHN/@@download/ENCFF667XHN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF334RXJ bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF242FNL, ENCFF253UKR, ENCFF279QEN, ENCFF349HMO 6518767 ENCODE Processing Pipeline d3c8a5697dfee1f6636b0ff25c149eef https://www.encodeproject.org/files/ENCFF334RXJ/@@download/ENCFF334RXJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF436WVU bigBed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF334RXJ 13149503 ENCODE Processing Pipeline 79243fcfc073501bf079eb856b33b6f1 https://www.encodeproject.org/files/ENCFF436WVU/@@download/ENCFF436WVU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF183DMM bed narrowPeak conservative idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF334RXJ, ENCFF419RSJ, ENCFF570WYD, ENCFF667XHN 178614 ENCODE Processing Pipeline c8b530aea1f25640d4a85965294c2791 https://www.encodeproject.org/files/ENCFF183DMM/@@download/ENCFF183DMM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF447SRJ bigBed narrowPeak optimal idr thresholded peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF487WAN 476387 ENCODE Processing Pipeline 20f458e264e8ffecc82e3078bcc3b803 https://www.encodeproject.org/files/ENCFF447SRJ/@@download/ENCFF447SRJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF194KNQ fastq reads ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 801722716 Xiang-Dong Fu, UCSD 0a6c450092336c7c341d18c6e1d4f04a SRA:SRR6214315 https://www.encodeproject.org/files/ENCFF194KNQ/@@download/ENCFF194KNQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF465JVB fastq reads ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 687539217 Xiang-Dong Fu, UCSD 9b7ead47e14a65313ae6a452934d7ac4 SRA:SRR6214316 https://www.encodeproject.org/files/ENCFF465JVB/@@download/ENCFF465JVB.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth ENCFF672CNP bam unfiltered alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF465JVB, ENCFF807MUK 921981968 ENCODE Processing Pipeline 80a588ef0d6bfd53dcf7bd7cdc26d6d2 https://www.encodeproject.org/files/ENCFF672CNP/@@download/ENCFF672CNP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF781OBT bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF465JVB, ENCFF807MUK 516121911 ENCODE Processing Pipeline 838afc4bae77b0879d845e5b63c26207 https://www.encodeproject.org/files/ENCFF781OBT/@@download/ENCFF781OBT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF182MUR bam unfiltered alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF465JVB, ENCFF643CGH 924484138 ENCODE Processing Pipeline af235bf755fce0bf0a637933784a1732 https://www.encodeproject.org/files/ENCFF182MUR/@@download/ENCFF182MUR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF641AUO bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF465JVB, ENCFF643CGH 515543121 ENCODE Processing Pipeline e4deb4a32e7cc559b8f71cd693deda0e https://www.encodeproject.org/files/ENCFF641AUO/@@download/ENCFF641AUO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF376CBQ bam unfiltered alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF194KNQ, ENCFF807MUK 1076867496 ENCODE Processing Pipeline db4f996b02b56963d8639d295f21e6b6 https://www.encodeproject.org/files/ENCFF376CBQ/@@download/ENCFF376CBQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF607KWI bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF194KNQ, ENCFF807MUK 604078774 ENCODE Processing Pipeline 448b545807bf698540ef510ebe99596f https://www.encodeproject.org/files/ENCFF607KWI/@@download/ENCFF607KWI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF029QUB bam unfiltered alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF194KNQ, ENCFF643CGH 1080259086 ENCODE Processing Pipeline 5ffe18bf77294c971043d9b2c2c4c4dc https://www.encodeproject.org/files/ENCFF029QUB/@@download/ENCFF029QUB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF883UWI bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF194KNQ, ENCFF643CGH 603446975 ENCODE Processing Pipeline a1b3fa859dd69a09280e9898457721f1 https://www.encodeproject.org/files/ENCFF883UWI/@@download/ENCFF883UWI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF039TRL bigWig signal p-value ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF607KWI 438879292 ENCODE Processing Pipeline 7bf225629bc4d1835f57bf3c14454f94 https://www.encodeproject.org/files/ENCFF039TRL/@@download/ENCFF039TRL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF583VGQ bigWig signal p-value ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF781OBT 419092802 ENCODE Processing Pipeline 8faaec45a3a6a813688422059705ffbc https://www.encodeproject.org/files/ENCFF583VGQ/@@download/ENCFF583VGQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF161AND bigWig fold change over control ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF607KWI 366044348 ENCODE Processing Pipeline 5677d492a089bcfb9487c36217b97b27 https://www.encodeproject.org/files/ENCFF161AND/@@download/ENCFF161AND.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF628VOK bigWig signal p-value ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF578XGS, ENCFF607KWI, ENCFF781OBT 905948044 ENCODE Processing Pipeline 828ef74c335d0eb1a06d5da6718a9419 https://www.encodeproject.org/files/ENCFF628VOK/@@download/ENCFF628VOK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF366WEI bigWig fold change over control ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF781OBT 301460568 ENCODE Processing Pipeline c6c696b5acfc0ff27f2de8effd91b4fc https://www.encodeproject.org/files/ENCFF366WEI/@@download/ENCFF366WEI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF572PWT bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF781OBT 5141108 ENCODE Processing Pipeline 180148d3496eda754af9bb9ffb8b5658 https://www.encodeproject.org/files/ENCFF572PWT/@@download/ENCFF572PWT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF801SLM bed narrowPeak conservative idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF243JAG, ENCFF572PWT, ENCFF713UPR 47989 ENCODE Processing Pipeline 87bb2b3092e8f48b14ff87e3062bfda4 https://www.encodeproject.org/files/ENCFF801SLM/@@download/ENCFF801SLM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF197UJE bigWig fold change over control ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF578XGS, ENCFF607KWI, ENCFF781OBT 782029966 ENCODE Processing Pipeline ad31aae321add58255ce2e3017ca87a3 https://www.encodeproject.org/files/ENCFF197UJE/@@download/ENCFF197UJE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF713UPR bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF607KWI 5206865 ENCODE Processing Pipeline fa15fb3c95b2b3f04b05c9625afd769e https://www.encodeproject.org/files/ENCFF713UPR/@@download/ENCFF713UPR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF067AMY bigBed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF572PWT 13135781 ENCODE Processing Pipeline 3562acd0db88a1e25eff1373144eec8f https://www.encodeproject.org/files/ENCFF067AMY/@@download/ENCFF067AMY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF522THU bigBed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF713UPR 11097659 ENCODE Processing Pipeline e21c2aa483867e30a6eddaf6b2bb5d6a https://www.encodeproject.org/files/ENCFF522THU/@@download/ENCFF522THU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF243JAG bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF578XGS, ENCFF607KWI, ENCFF781OBT 6544228 ENCODE Processing Pipeline 633750108251956791b46b66f2131931 https://www.encodeproject.org/files/ENCFF243JAG/@@download/ENCFF243JAG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF049IUL bigBed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF243JAG 13452579 ENCODE Processing Pipeline 1d31c17d34affa06552ae423add2cd14 https://www.encodeproject.org/files/ENCFF049IUL/@@download/ENCFF049IUL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF183OZR bigBed narrowPeak conservative idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF801SLM 128821 ENCODE Processing Pipeline 9fb3ee8137f1cc12244722c2ba1fdf3f https://www.encodeproject.org/files/ENCFF183OZR/@@download/ENCFF183OZR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF038QAU bed narrowPeak optimal idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF243JAG, ENCFF572PWT, ENCFF713UPR 59703 ENCODE Processing Pipeline 05af5d42b9e4152c95b86de5913e67a8 https://www.encodeproject.org/files/ENCFF038QAU/@@download/ENCFF038QAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF359VUY bigBed narrowPeak optimal idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF038QAU 144529 ENCODE Processing Pipeline 774f6cdebbcb6f83139968ec19a6820c https://www.encodeproject.org/files/ENCFF359VUY/@@download/ENCFF359VUY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF837KEU bigWig fold change over control ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF253UKR, ENCFF279QEN, ENCFF641AUO, ENCFF883UWI 777115460 ENCODE Processing Pipeline 826f32eecef2baa247d5981b617069de https://www.encodeproject.org/files/ENCFF837KEU/@@download/ENCFF837KEU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF297WAT bigBed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF358ASG 13468094 ENCODE Processing Pipeline f1d8496ce0caf28bb5abb5f785dd2fdc https://www.encodeproject.org/files/ENCFF297WAT/@@download/ENCFF297WAT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF298BUG bigWig signal p-value ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253UKR, ENCFF641AUO 408584642 ENCODE Processing Pipeline e9c5b2ba56ea071bb63ab6bd19777a25 https://www.encodeproject.org/files/ENCFF298BUG/@@download/ENCFF298BUG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF616JHC bigWig signal p-value ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF883UWI 472597289 ENCODE Processing Pipeline 5bd48089c37573ee16e2a28716d64b19 https://www.encodeproject.org/files/ENCFF616JHC/@@download/ENCFF616JHC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF676QOY bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253UKR, ENCFF641AUO 5131870 ENCODE Processing Pipeline 0f99c85102d1a7459c879f046d1c97e6 https://www.encodeproject.org/files/ENCFF676QOY/@@download/ENCFF676QOY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF900HTW bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF883UWI 5202444 ENCODE Processing Pipeline eca34cdfcb81cffb1810204abe0982af https://www.encodeproject.org/files/ENCFF900HTW/@@download/ENCFF900HTW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF195PJB bigWig fold change over control ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF883UWI 364314367 ENCODE Processing Pipeline 9ef7a5591df958dc357026f695a61f37 https://www.encodeproject.org/files/ENCFF195PJB/@@download/ENCFF195PJB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF929UYP bigBed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF676QOY 13133599 ENCODE Processing Pipeline b7f725ba0b431937a2c3f98a35b022dc https://www.encodeproject.org/files/ENCFF929UYP/@@download/ENCFF929UYP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF687AIT bigBed narrowPeak optimal idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF562ADR 140457 ENCODE Processing Pipeline c809a98c144acfd69a078b35c596b82b https://www.encodeproject.org/files/ENCFF687AIT/@@download/ENCFF687AIT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF264JMK bigWig fold change over control ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253UKR, ENCFF641AUO 302722683 ENCODE Processing Pipeline c538061196bc257fd6639fc859267aa1 https://www.encodeproject.org/files/ENCFF264JMK/@@download/ENCFF264JMK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF306WXB bigWig signal p-value ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF253UKR, ENCFF279QEN, ENCFF641AUO, ENCFF883UWI 870465391 ENCODE Processing Pipeline 869f5be94c29b2d6656a0fb4c844c741 https://www.encodeproject.org/files/ENCFF306WXB/@@download/ENCFF306WXB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF358ASG bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF253UKR, ENCFF279QEN, ENCFF641AUO, ENCFF883UWI 6517162 ENCODE Processing Pipeline ab66b4b8739c0b15ce8eb5297bc38b48 https://www.encodeproject.org/files/ENCFF358ASG/@@download/ENCFF358ASG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF354HQO bigBed narrowPeak conservative idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF764DOP 130835 ENCODE Processing Pipeline c770d6c7cf77d55e27bce14d1a8bd2b9 https://www.encodeproject.org/files/ENCFF354HQO/@@download/ENCFF354HQO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF120OZU bigBed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF900HTW 11107212 ENCODE Processing Pipeline b4416cb458e1cc82eef1e73334ee2dd3 https://www.encodeproject.org/files/ENCFF120OZU/@@download/ENCFF120OZU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF764DOP bed narrowPeak conservative idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF358ASG, ENCFF419RSJ, ENCFF676QOY, ENCFF900HTW 48737 ENCODE Processing Pipeline a24eb3176b03fc4f49c107da32459c91 https://www.encodeproject.org/files/ENCFF764DOP/@@download/ENCFF764DOP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF562ADR bed narrowPeak optimal idr thresholded peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF358ASG, ENCFF419RSJ, ENCFF676QOY, ENCFF900HTW 55610 ENCODE Processing Pipeline 9eed5390c042f48d31955c75a3366cd0 https://www.encodeproject.org/files/ENCFF562ADR/@@download/ENCFF562ADR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF659LDK fastq reads ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF034NND 2156482190 Michael Snyder, Stanford a8935b525a8c495e43d102afaa1b33b3 https://www.encodeproject.org/files/ENCFF659LDK/@@download/ENCFF659LDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF034NND fastq reads ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF659LDK 2195156409 Michael Snyder, Stanford 2b641095ec3e616ddd1dbc7f22775403 https://www.encodeproject.org/files/ENCFF034NND/@@download/ENCFF034NND.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF312PYR fastq reads ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF704VXZ 2323921927 Michael Snyder, Stanford a9e0589569b414c006dcea991621a8f4 https://www.encodeproject.org/files/ENCFF312PYR/@@download/ENCFF312PYR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF704VXZ fastq reads ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF312PYR 2300631755 Michael Snyder, Stanford ea398ee8a24b63b840f018efe4045f05 https://www.encodeproject.org/files/ENCFF704VXZ/@@download/ENCFF704VXZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF340MAJ bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 100 ENCFF034NND, ENCFF643CGH, ENCFF659LDK 3959565029 ENCODE Processing Pipeline 9d2895af4966f5993a737dff3594d2fc https://www.encodeproject.org/files/ENCFF340MAJ/@@download/ENCFF340MAJ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF228NIW bam unfiltered alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 100 ENCFF312PYR, ENCFF643CGH, ENCFF704VXZ 5052885163 ENCODE Processing Pipeline 2d2137aa0f92bcd19e3694fe997b1356 https://www.encodeproject.org/files/ENCFF228NIW/@@download/ENCFF228NIW.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF545PED bam unfiltered alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 100 ENCFF034NND, ENCFF643CGH, ENCFF659LDK 4797136390 ENCODE Processing Pipeline 63e15f411792e2ef879529211ead62d0 https://www.encodeproject.org/files/ENCFF545PED/@@download/ENCFF545PED.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF915PJM bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 100 ENCFF312PYR, ENCFF643CGH, ENCFF704VXZ 3988082806 ENCODE Processing Pipeline 714a3c6c0991a396697d79bad44ae347 https://www.encodeproject.org/files/ENCFF915PJM/@@download/ENCFF915PJM.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF655RJC bigWig signal p-value ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF340MAJ, ENCFF426RDP 880842511 ENCODE Processing Pipeline 1d13b6cc9433c2b5be4cb9ebdff84cc4 https://www.encodeproject.org/files/ENCFF655RJC/@@download/ENCFF655RJC.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF284ZOV bigWig fold change over control ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF340MAJ, ENCFF426RDP 988277999 ENCODE Processing Pipeline 1d2cefd0ae72086225e42edc8eb38542 https://www.encodeproject.org/files/ENCFF284ZOV/@@download/ENCFF284ZOV.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF519TRJ bed narrowPeak optimal idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF307HYC, ENCFF411XBU, ENCFF419RSJ, ENCFF574GNY 40222 ENCODE Processing Pipeline 11ba3524e04bb92f31e0a4457890e3ac https://www.encodeproject.org/files/ENCFF519TRJ/@@download/ENCFF519TRJ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF739MTO bigWig signal p-value ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF340MAJ, ENCFF426RDP, ENCFF915PJM 1615449776 ENCODE Processing Pipeline c88a1f44fc354e32e81136e272d99230 https://www.encodeproject.org/files/ENCFF739MTO/@@download/ENCFF739MTO.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF307HYC bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF340MAJ, ENCFF426RDP 5895546 ENCODE Processing Pipeline 521a2498521b390cd003640701349869 https://www.encodeproject.org/files/ENCFF307HYC/@@download/ENCFF307HYC.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF574GNY bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF340MAJ, ENCFF426RDP, ENCFF915PJM 6951998 ENCODE Processing Pipeline 32303b88cccb3cad49ce9a9019297f80 https://www.encodeproject.org/files/ENCFF574GNY/@@download/ENCFF574GNY.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF228HMV bigWig signal p-value ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF915PJM 984489498 ENCODE Processing Pipeline c77f49212fa30089bbd41bb7a58babf5 https://www.encodeproject.org/files/ENCFF228HMV/@@download/ENCFF228HMV.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF234VUF bigWig fold change over control ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF915PJM 1024045515 ENCODE Processing Pipeline 949214badab55efb1ff3c0ae209e9dc9 https://www.encodeproject.org/files/ENCFF234VUF/@@download/ENCFF234VUF.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF384HRR bigBed narrowPeak conservative idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF110GSD 96027 ENCODE Processing Pipeline 10636074d48388515346f5f57dfa258f https://www.encodeproject.org/files/ENCFF384HRR/@@download/ENCFF384HRR.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF125LWA bigBed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF411XBU 11243147 ENCODE Processing Pipeline 1d0da514685f327b38f11478edf11081 https://www.encodeproject.org/files/ENCFF125LWA/@@download/ENCFF125LWA.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF003QJS bigBed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF574GNY 11110287 ENCODE Processing Pipeline 3f2ed3ba8ba0df1dd78062d80c86283c https://www.encodeproject.org/files/ENCFF003QJS/@@download/ENCFF003QJS.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF361GWV bigWig fold change over control ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF340MAJ, ENCFF426RDP, ENCFF915PJM 1927097630 ENCODE Processing Pipeline 4957ab77fc03af52d5f46f3343d8d238 https://www.encodeproject.org/files/ENCFF361GWV/@@download/ENCFF361GWV.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF411XBU bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF915PJM 5608565 ENCODE Processing Pipeline c7dc0bf487b6eee13a67571496485d7e https://www.encodeproject.org/files/ENCFF411XBU/@@download/ENCFF411XBU.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF672ZVO bigBed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF307HYC 11155358 ENCODE Processing Pipeline 93aabaaf5f7f91ed73bda70168acb38f https://www.encodeproject.org/files/ENCFF672ZVO/@@download/ENCFF672ZVO.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF110GSD bed narrowPeak conservative idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF307HYC, ENCFF411XBU, ENCFF419RSJ, ENCFF574GNY 15916 ENCODE Processing Pipeline ddc30f3cd23ac3506c2ba177ab0306da https://www.encodeproject.org/files/ENCFF110GSD/@@download/ENCFF110GSD.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF266UMN bigBed narrowPeak optimal idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF519TRJ 146089 ENCODE Processing Pipeline 642abd2f78d4f29706f4d3f71db3f655 https://www.encodeproject.org/files/ENCFF266UMN/@@download/ENCFF266UMN.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF252USO bam unfiltered alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 100 ENCFF312PYR, ENCFF704VXZ, ENCFF807MUK 5046695372 ENCODE Processing Pipeline cb1182c38f7e7e6da07680c7da9831a7 https://www.encodeproject.org/files/ENCFF252USO/@@download/ENCFF252USO.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF204OVV bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 100 ENCFF312PYR, ENCFF704VXZ, ENCFF807MUK 3983272961 ENCODE Processing Pipeline 50950638524401b4d0f2e3350a9b829c https://www.encodeproject.org/files/ENCFF204OVV/@@download/ENCFF204OVV.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF600OYA bam unfiltered alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 100 ENCFF034NND, ENCFF659LDK, ENCFF807MUK 4788730207 ENCODE Processing Pipeline 4b8766f45aafa374ad7b60d530369f6e https://www.encodeproject.org/files/ENCFF600OYA/@@download/ENCFF600OYA.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF877UQR bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 100 ENCFF034NND, ENCFF659LDK, ENCFF807MUK 3954852867 ENCODE Processing Pipeline 1abe90ff45e2291dff0d31acce06976c https://www.encodeproject.org/files/ENCFF877UQR/@@download/ENCFF877UQR.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF599WWE bigWig fold change over control ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF877UQR 974791396 ENCODE Processing Pipeline 5948851276b55623345992308b038c80 https://www.encodeproject.org/files/ENCFF599WWE/@@download/ENCFF599WWE.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF498RJI bed narrowPeak conservative idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF111XHJ, ENCFF472FKC, ENCFF484BXC 13781 ENCODE Processing Pipeline 0722ba5eb7ccf271a765cf75a1d521b3 https://www.encodeproject.org/files/ENCFF498RJI/@@download/ENCFF498RJI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF707HRI bigWig fold change over control ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF204OVV, ENCFF583FAG, ENCFF877UQR 1910546254 ENCODE Processing Pipeline 9beb51192ebedff65abc9699f8332960 https://www.encodeproject.org/files/ENCFF707HRI/@@download/ENCFF707HRI.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF349JNR bigBed narrowPeak conservative idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF498RJI 89897 ENCODE Processing Pipeline f28913680849857deef4c1e7c32a569a https://www.encodeproject.org/files/ENCFF349JNR/@@download/ENCFF349JNR.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF193FZK bed narrowPeak optimal idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF111XHJ, ENCFF472FKC, ENCFF484BXC 37772 ENCODE Processing Pipeline 6d8a2ae1b22bb8666ac032eee0fec1c5 https://www.encodeproject.org/files/ENCFF193FZK/@@download/ENCFF193FZK.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF111XHJ bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF877UQR 5892761 ENCODE Processing Pipeline 11545fe48811c23bdb63d0e4527d0074 https://www.encodeproject.org/files/ENCFF111XHJ/@@download/ENCFF111XHJ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF472FKC bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF204OVV, ENCFF583FAG, ENCFF877UQR 6940594 ENCODE Processing Pipeline 35917a6459949faca1159d133c46886f https://www.encodeproject.org/files/ENCFF472FKC/@@download/ENCFF472FKC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF096AUT bigBed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF472FKC 11090631 ENCODE Processing Pipeline 756ece7878ba0444048a333c9fbe9bb9 https://www.encodeproject.org/files/ENCFF096AUT/@@download/ENCFF096AUT.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF312NVV bigWig signal p-value ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF204OVV, ENCFF583FAG, ENCFF877UQR 1671863530 ENCODE Processing Pipeline 2af9b9a3c685311df599c321120c488e https://www.encodeproject.org/files/ENCFF312NVV/@@download/ENCFF312NVV.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF636GZY bigBed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF111XHJ 11134135 ENCODE Processing Pipeline 8c274ef5697125dd51421a178e344523 https://www.encodeproject.org/files/ENCFF636GZY/@@download/ENCFF636GZY.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF382YWE bigBed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF484BXC 11221960 ENCODE Processing Pipeline d13d0ff9261d2517b0dce2d022e85c3b https://www.encodeproject.org/files/ENCFF382YWE/@@download/ENCFF382YWE.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF934XSN bigWig fold change over control ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF204OVV 1021827230 ENCODE Processing Pipeline 921489814a8845b7adb1f76b158693c2 https://www.encodeproject.org/files/ENCFF934XSN/@@download/ENCFF934XSN.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF484BXC bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF204OVV 5604294 ENCODE Processing Pipeline 42821014acba8842b34c8e4e74196e06 https://www.encodeproject.org/files/ENCFF484BXC/@@download/ENCFF484BXC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF216MWT bigWig signal p-value ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF877UQR 1034403357 ENCODE Processing Pipeline 6958931c35a76b0515213e7bb219cff3 https://www.encodeproject.org/files/ENCFF216MWT/@@download/ENCFF216MWT.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF886TQJ bigWig signal p-value ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF204OVV 884150780 ENCODE Processing Pipeline 505227018d213cb57fd94e11fa4150e4 https://www.encodeproject.org/files/ENCFF886TQJ/@@download/ENCFF886TQJ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF780HUV bigBed narrowPeak optimal idr thresholded peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF193FZK 138544 ENCODE Processing Pipeline a2b6d706b27cfcf9aada254cb5b26f15 https://www.encodeproject.org/files/ENCFF780HUV/@@download/ENCFF780HUV.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF803COB fastq reads ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF866GSF 2645347235 Michael Snyder, Stanford 7ad391eb5e0460df91c9778172b9377b SRA:SRR6214088 https://www.encodeproject.org/files/ENCFF803COB/@@download/ENCFF803COB.fastq.gz Illumina HiSeq 4000 /files/ENCFF321IEZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF866GSF fastq reads ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF803COB 3063648191 Michael Snyder, Stanford ebf8c99ff3f070ce4e2cfbee8e377aad SRA:SRR6214088 https://www.encodeproject.org/files/ENCFF866GSF/@@download/ENCFF866GSF.fastq.gz Illumina HiSeq 4000 /files/ENCFF479WFS/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF089YCF bam unfiltered alignments ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF803COB, ENCFF807MUK, ENCFF866GSF 5327055574 ENCODE Processing Pipeline 85998bdb3bca60fa6c088ff5f0b88902 https://www.encodeproject.org/files/ENCFF089YCF/@@download/ENCFF089YCF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF840LTU bam alignments ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF803COB, ENCFF807MUK, ENCFF866GSF 3583218224 ENCODE Processing Pipeline f02f2d563b3b81f7b9fee95fdb2dc287 https://www.encodeproject.org/files/ENCFF840LTU/@@download/ENCFF840LTU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF724QEU bam unfiltered alignments ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF803COB, ENCFF866GSF 5328734502 ENCODE Processing Pipeline 86febc68e3dc8849c96f24aaaea3ae47 https://www.encodeproject.org/files/ENCFF724QEU/@@download/ENCFF724QEU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF353ZVY bam alignments ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF803COB, ENCFF866GSF 3586919387 ENCODE Processing Pipeline a0cd581b7660fea41620de43af5a062b https://www.encodeproject.org/files/ENCFF353ZVY/@@download/ENCFF353ZVY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147AKP bigWig signal p-value ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF089ZLE, ENCFF840LTU 1238119628 ENCODE Processing Pipeline 7c78d1e61635135c86fa75dad2c0668d https://www.encodeproject.org/files/ENCFF147AKP/@@download/ENCFF147AKP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF431YEN bigWig fold change over control ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF089ZLE, ENCFF840LTU 1256903650 ENCODE Processing Pipeline a4b5fd56692395c790bc8e60d2c3f86d https://www.encodeproject.org/files/ENCFF431YEN/@@download/ENCFF431YEN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF279SFG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF147RBN 765398 ENCODE Processing Pipeline de4384b45725a3120bf956950116a875 https://www.encodeproject.org/files/ENCFF279SFG/@@download/ENCFF279SFG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF256VHD bed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF089ZLE, ENCFF840LTU 6076917 ENCODE Processing Pipeline 4864a2dbaf20706a0f16e60bfebca823 https://www.encodeproject.org/files/ENCFF256VHD/@@download/ENCFF256VHD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147RBN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF256VHD 404105 ENCODE Processing Pipeline 25e246f967fa8ecbef00677d441d8c1e https://www.encodeproject.org/files/ENCFF147RBN/@@download/ENCFF147RBN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF242QVD bigBed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF256VHD 11535360 ENCODE Processing Pipeline 666138ee1a619b09dc0cbc1c13c25e3c https://www.encodeproject.org/files/ENCFF242QVD/@@download/ENCFF242QVD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF065BYT bigWig signal p-value ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF023NJF, ENCFF353ZVY 1081322485 ENCODE Processing Pipeline 1fe3cab7225daf5dde3712d610aa1903 https://www.encodeproject.org/files/ENCFF065BYT/@@download/ENCFF065BYT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF135IYN bed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF023NJF, ENCFF353ZVY 6080530 ENCODE Processing Pipeline 6b399df16d8c6895fbd7d4d9fdcb9a77 https://www.encodeproject.org/files/ENCFF135IYN/@@download/ENCFF135IYN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF437XDA bigBed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF135IYN 11557541 ENCODE Processing Pipeline 3faf0134eea4c4c1358c7d56b03bd3d4 https://www.encodeproject.org/files/ENCFF437XDA/@@download/ENCFF437XDA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF142LSJ bigWig fold change over control ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF023NJF, ENCFF353ZVY 1258762621 ENCODE Processing Pipeline 1fbb3467bc58856c8a9e2df605f41238 https://www.encodeproject.org/files/ENCFF142LSJ/@@download/ENCFF142LSJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF537PSH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF374MIO 774772 ENCODE Processing Pipeline 079684b4f341224242f4bc1acb720522 https://www.encodeproject.org/files/ENCFF537PSH/@@download/ENCFF537PSH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF374MIO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF135IYN, ENCFF419RSJ 409511 ENCODE Processing Pipeline 9665a8b4c127a52b70bf20fdff679b2a https://www.encodeproject.org/files/ENCFF374MIO/@@download/ENCFF374MIO.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF439UUP fastq reads ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF333JPS 3819797508 Michael Snyder, Stanford a81d09f43e49439053b8c697876d34f3 https://www.encodeproject.org/files/ENCFF439UUP/@@download/ENCFF439UUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF129HKI fastq reads ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF111ZWV 3325444853 Michael Snyder, Stanford 6d6c496956fee94dcd4f7beedd7fc9d6 https://www.encodeproject.org/files/ENCFF129HKI/@@download/ENCFF129HKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF333JPS fastq reads ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF439UUP 3815969030 Michael Snyder, Stanford 08743702baad3b5c3b017091a7aa48a5 https://www.encodeproject.org/files/ENCFF333JPS/@@download/ENCFF333JPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF111ZWV fastq reads ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF129HKI 3330712064 Michael Snyder, Stanford cf4375d21f432837ce8afb7b8870d49b https://www.encodeproject.org/files/ENCFF111ZWV/@@download/ENCFF111ZWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF212FEG bam unfiltered alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 100 ENCFF111ZWV, ENCFF129HKI, ENCFF643CGH 7117354386 ENCODE Processing Pipeline 27b92de21c138ceb144ad7002812a7ee https://www.encodeproject.org/files/ENCFF212FEG/@@download/ENCFF212FEG.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF200RFV bam unfiltered alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 100 ENCFF333JPS, ENCFF439UUP, ENCFF643CGH 8135826390 ENCODE Processing Pipeline 43ac2910dcc252fd825be37d8cd98cc1 https://www.encodeproject.org/files/ENCFF200RFV/@@download/ENCFF200RFV.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF887LKI bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 100 ENCFF333JPS, ENCFF439UUP, ENCFF643CGH 6468266480 ENCODE Processing Pipeline 93a366d897613f692bc721ed801096e8 https://www.encodeproject.org/files/ENCFF887LKI/@@download/ENCFF887LKI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF627XYQ bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 100 ENCFF111ZWV, ENCFF129HKI, ENCFF643CGH 5608798596 ENCODE Processing Pipeline 9566c7fe4b68b2146f5b2f98dd33ac84 https://www.encodeproject.org/files/ENCFF627XYQ/@@download/ENCFF627XYQ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF021XKN bigWig signal p-value ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF627XYQ, ENCFF887LKI, ENCFF910IKB 2007322243 ENCODE Processing Pipeline 9fd06a4eaef50b779b52d67a3bef3b2d https://www.encodeproject.org/files/ENCFF021XKN/@@download/ENCFF021XKN.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF615BBI bigWig signal p-value ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF627XYQ 1016588769 ENCODE Processing Pipeline d5dbb57b312901c62e02a2258967241e https://www.encodeproject.org/files/ENCFF615BBI/@@download/ENCFF615BBI.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF382TOZ bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF627XYQ, ENCFF887LKI, ENCFF910IKB 7176078 ENCODE Processing Pipeline 0c3a9fefa9ebb41e95c1c273889e085b https://www.encodeproject.org/files/ENCFF382TOZ/@@download/ENCFF382TOZ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF104IIJ bed narrowPeak conservative idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF196OXK, ENCFF310KQI, ENCFF382TOZ, ENCFF419RSJ 46938 ENCODE Processing Pipeline bed2e6d2b8ed91f0cb1135192c2a1906 https://www.encodeproject.org/files/ENCFF104IIJ/@@download/ENCFF104IIJ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF089PKE bed narrowPeak optimal idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF196OXK, ENCFF310KQI, ENCFF382TOZ, ENCFF419RSJ 94464 ENCODE Processing Pipeline 260a4d6538d8c0d709bb34946b10ff24 https://www.encodeproject.org/files/ENCFF089PKE/@@download/ENCFF089PKE.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF787DUB bigBed narrowPeak optimal idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF089PKE 233312 ENCODE Processing Pipeline e6194eaef378e43ae8c3b4957cf2b122 https://www.encodeproject.org/files/ENCFF787DUB/@@download/ENCFF787DUB.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF918KNN bigWig fold change over control ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF887LKI, ENCFF910IKB 1451462365 ENCODE Processing Pipeline e4d32d69418a1e0a868647df731f759e https://www.encodeproject.org/files/ENCFF918KNN/@@download/ENCFF918KNN.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF955KWH bigWig fold change over control ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF627XYQ, ENCFF887LKI, ENCFF910IKB 2404506512 ENCODE Processing Pipeline a1630bea677535b8beb1869e05107d5c https://www.encodeproject.org/files/ENCFF955KWH/@@download/ENCFF955KWH.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF310KQI bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF887LKI, ENCFF910IKB 6431825 ENCODE Processing Pipeline 1822238bbbb4660bc246cc5062441192 https://www.encodeproject.org/files/ENCFF310KQI/@@download/ENCFF310KQI.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF495GMF bigBed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF382TOZ 11039697 ENCODE Processing Pipeline 22b2644cb2b7d7697e3d6229f2de3b33 https://www.encodeproject.org/files/ENCFF495GMF/@@download/ENCFF495GMF.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF617XSW bigWig signal p-value ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF887LKI, ENCFF910IKB 1343862936 ENCODE Processing Pipeline ae0010cdb59b7560c0a8f786ca57b5c9 https://www.encodeproject.org/files/ENCFF617XSW/@@download/ENCFF617XSW.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF925ODO bigWig fold change over control ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF627XYQ 1309221638 ENCODE Processing Pipeline 88aeb90ef63cdf10b98dff6dc998606a https://www.encodeproject.org/files/ENCFF925ODO/@@download/ENCFF925ODO.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF196OXK bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF627XYQ 6497344 ENCODE Processing Pipeline 84a0c91d208bd8ea36ca0c42c9dd3e09 https://www.encodeproject.org/files/ENCFF196OXK/@@download/ENCFF196OXK.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF091XYI bigBed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF196OXK 11055818 ENCODE Processing Pipeline 6c7bbb8c8a398d5faaea5b6a075d13ec https://www.encodeproject.org/files/ENCFF091XYI/@@download/ENCFF091XYI.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF347QYW bigBed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF310KQI 11091941 ENCODE Processing Pipeline c6c907be1fa5efd04b24d81bc6d7c1db https://www.encodeproject.org/files/ENCFF347QYW/@@download/ENCFF347QYW.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF245JYA bigBed narrowPeak conservative idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104IIJ 132868 ENCODE Processing Pipeline b35f74df4f4ecc8a7cffff88ccf94411 https://www.encodeproject.org/files/ENCFF245JYA/@@download/ENCFF245JYA.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF879SVY bam unfiltered alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 100 ENCFF111ZWV, ENCFF129HKI, ENCFF807MUK 7112595337 ENCODE Processing Pipeline e82f847f16ce4a6dd2755e613a42ccfc https://www.encodeproject.org/files/ENCFF879SVY/@@download/ENCFF879SVY.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF931LAW bam unfiltered alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 100 ENCFF333JPS, ENCFF439UUP, ENCFF807MUK 8129305727 ENCODE Processing Pipeline d64e84610ac4df1591e6751db84a2250 https://www.encodeproject.org/files/ENCFF931LAW/@@download/ENCFF931LAW.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF185TBI bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 100 ENCFF111ZWV, ENCFF129HKI, ENCFF807MUK 5605651361 ENCODE Processing Pipeline c7656835c6f5e9c989a5b0d3b79902e9 https://www.encodeproject.org/files/ENCFF185TBI/@@download/ENCFF185TBI.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF376JWD bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 100 ENCFF333JPS, ENCFF439UUP, ENCFF807MUK 6462056624 ENCODE Processing Pipeline de94b48934a52e6c2df13455d839d28b https://www.encodeproject.org/files/ENCFF376JWD/@@download/ENCFF376JWD.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF537FAL bigWig signal p-value ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF376JWD, ENCFF581ZJL 1395476374 ENCODE Processing Pipeline 9242eb2e98fd7db5da6f7495ab03584f https://www.encodeproject.org/files/ENCFF537FAL/@@download/ENCFF537FAL.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF012IIY bigWig signal p-value ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF185TBI 1201892488 ENCODE Processing Pipeline 221257424266d38a3999d90cfd822bf5 https://www.encodeproject.org/files/ENCFF012IIY/@@download/ENCFF012IIY.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF817QIX bigWig fold change over control ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF376JWD, ENCFF581ZJL 1448532717 ENCODE Processing Pipeline ec7ba24dfbd3bfb7693867d62ba3fa6c https://www.encodeproject.org/files/ENCFF817QIX/@@download/ENCFF817QIX.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF888ENF bigWig fold change over control ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF185TBI 1319574030 ENCODE Processing Pipeline a5b8f62afa650b3ef42de4e5e88b10d4 https://www.encodeproject.org/files/ENCFF888ENF/@@download/ENCFF888ENF.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF796PJX bigWig signal p-value ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF185TBI, ENCFF376JWD, ENCFF581ZJL 2285386805 ENCODE Processing Pipeline 8d98e8bb2ae870cc07fd15e649aac6c4 https://www.encodeproject.org/files/ENCFF796PJX/@@download/ENCFF796PJX.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF113AKA bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF185TBI 6495886 ENCODE Processing Pipeline 7494f70453ea5f93629feef228a66aed https://www.encodeproject.org/files/ENCFF113AKA/@@download/ENCFF113AKA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF839UNU bigBed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF113AKA 11040641 ENCODE Processing Pipeline 18fd67e2f4ff7d17155a268accdacaac https://www.encodeproject.org/files/ENCFF839UNU/@@download/ENCFF839UNU.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF565ONA bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF376JWD, ENCFF581ZJL 6489843 ENCODE Processing Pipeline 37411dc101264ed436539b6d7e933bd5 https://www.encodeproject.org/files/ENCFF565ONA/@@download/ENCFF565ONA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF205KOI bigBed narrowPeak conservative idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF991AML 155844 ENCODE Processing Pipeline ab36874f434416900389566875b205c7 https://www.encodeproject.org/files/ENCFF205KOI/@@download/ENCFF205KOI.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF866PWA bigBed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF287JMK 11025003 ENCODE Processing Pipeline b2b06d1789503e505a3fa044f80685da https://www.encodeproject.org/files/ENCFF866PWA/@@download/ENCFF866PWA.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF694WYQ bigWig fold change over control ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF185TBI, ENCFF376JWD, ENCFF581ZJL 2402517284 ENCODE Processing Pipeline 14631ef99c8682941178fdec067b90b9 https://www.encodeproject.org/files/ENCFF694WYQ/@@download/ENCFF694WYQ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF104TZZ bigBed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF565ONA 11084462 ENCODE Processing Pipeline da65234adff2cef16758a9462a7c8756 https://www.encodeproject.org/files/ENCFF104TZZ/@@download/ENCFF104TZZ.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF010MMQ bed narrowPeak optimal idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF113AKA, ENCFF287JMK, ENCFF565ONA 95573 ENCODE Processing Pipeline c4d9d80170982a17ce764c0984b48c45 https://www.encodeproject.org/files/ENCFF010MMQ/@@download/ENCFF010MMQ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF287JMK bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF185TBI, ENCFF376JWD, ENCFF581ZJL 7170533 ENCODE Processing Pipeline da87553a0506efb3dbf344c8ab771324 https://www.encodeproject.org/files/ENCFF287JMK/@@download/ENCFF287JMK.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF991AML bed narrowPeak conservative idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF113AKA, ENCFF287JMK, ENCFF565ONA 47611 ENCODE Processing Pipeline 04d109daf5f78b134fa8b736352ef20d https://www.encodeproject.org/files/ENCFF991AML/@@download/ENCFF991AML.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF967UPX bigBed narrowPeak optimal idr thresholded peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF010MMQ 232730 ENCODE Processing Pipeline 7bd3d84e43e5757c97e871b47ce88481 https://www.encodeproject.org/files/ENCFF967UPX/@@download/ENCFF967UPX.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF492CBJ fastq reads ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2203528433 Richard Myers, HAIB bc0cbed41e8bbffe2d05b2bfafcaa858 SRA:SRR5331237 https://www.encodeproject.org/files/ENCFF492CBJ/@@download/ENCFF492CBJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF807WOU fastq reads ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1621707075 Richard Myers, HAIB 69a473a0a04d83cdf5f22b0017cbc150 SRA:SRR5331236 https://www.encodeproject.org/files/ENCFF807WOU/@@download/ENCFF807WOU.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF230VSB bam unfiltered alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF807WOU 1863812324 ENCODE Processing Pipeline 92fe79bda7d05a54a2f71036c5181a4f https://www.encodeproject.org/files/ENCFF230VSB/@@download/ENCFF230VSB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF889YJQ bam unfiltered alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF807WOU 1861054938 ENCODE Processing Pipeline ed965b10852116ece800e182705910a3 https://www.encodeproject.org/files/ENCFF889YJQ/@@download/ENCFF889YJQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF843SEP bam unfiltered alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF492CBJ, ENCFF807MUK 2526229076 ENCODE Processing Pipeline 297f6d30570fc768c363a4dc056e8c80 https://www.encodeproject.org/files/ENCFF843SEP/@@download/ENCFF843SEP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF349DVS bam unfiltered alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF492CBJ, ENCFF643CGH 2532141146 ENCODE Processing Pipeline 63967fc01968bf520850f527fae6557b https://www.encodeproject.org/files/ENCFF349DVS/@@download/ENCFF349DVS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF145VRC bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF807WOU 1424580326 ENCODE Processing Pipeline 3401aea2cea36d05412fe0954c0c318f https://www.encodeproject.org/files/ENCFF145VRC/@@download/ENCFF145VRC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF031XNE bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF807WOU 1424171528 ENCODE Processing Pipeline c2a1c5ca2dcacb085b83282dbc0ee675 https://www.encodeproject.org/files/ENCFF031XNE/@@download/ENCFF031XNE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684RLL bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF492CBJ, ENCFF807MUK 1910898776 ENCODE Processing Pipeline e043aa97ad91d9d0d814ae46e055141c https://www.encodeproject.org/files/ENCFF684RLL/@@download/ENCFF684RLL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126DKX bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF492CBJ, ENCFF643CGH 1912101768 ENCODE Processing Pipeline 58b4a24171a65b977ab213c2980d4cc8 https://www.encodeproject.org/files/ENCFF126DKX/@@download/ENCFF126DKX.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF812ICD bigWig signal p-value ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF126DKX 668293066 ENCODE Processing Pipeline f21e2ac093612759cb26da38c368edf9 https://www.encodeproject.org/files/ENCFF812ICD/@@download/ENCFF812ICD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF181DXF bigWig signal p-value ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF145VRC 540078184 ENCODE Processing Pipeline 7299fa85c9b25ec12f50eb301d3c1d0f https://www.encodeproject.org/files/ENCFF181DXF/@@download/ENCFF181DXF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF582PSI bigWig signal p-value ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126DKX, ENCFF145VRC 646181865 ENCODE Processing Pipeline dc4121446be6b1eb65bd84c56baf4711 https://www.encodeproject.org/files/ENCFF582PSI/@@download/ENCFF582PSI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF662ZUD bigWig fold change over control ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF145VRC 546751853 ENCODE Processing Pipeline 8000e8f283aaddd79ae138650aa1e958 https://www.encodeproject.org/files/ENCFF662ZUD/@@download/ENCFF662ZUD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF567NUB bigWig fold change over control ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF126DKX 677527776 ENCODE Processing Pipeline f2cb8399116159778bdb2292f09de74b https://www.encodeproject.org/files/ENCFF567NUB/@@download/ENCFF567NUB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531VJG bigWig fold change over control ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126DKX, ENCFF145VRC 993741722 ENCODE Processing Pipeline 3b9e3137ef3fdd57746097ced29ac05e https://www.encodeproject.org/files/ENCFF531VJG/@@download/ENCFF531VJG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF112FKQ bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF126DKX 5930966 ENCODE Processing Pipeline 892c457374ec13bc20e1fd11bfe828fe https://www.encodeproject.org/files/ENCFF112FKQ/@@download/ENCFF112FKQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616MAQ bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF145VRC 6204623 ENCODE Processing Pipeline 556d36149ba28a82a4afd69188ec9fd1 https://www.encodeproject.org/files/ENCFF616MAQ/@@download/ENCFF616MAQ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF946JSV bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126DKX, ENCFF145VRC 6700911 ENCODE Processing Pipeline cebf48d55f3ef6c044196fe2cd75e126 https://www.encodeproject.org/files/ENCFF946JSV/@@download/ENCFF946JSV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF037ZVB bigBed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF112FKQ 13122809 ENCODE Processing Pipeline 4176a802e907e3453c673b3e921b6cd7 https://www.encodeproject.org/files/ENCFF037ZVB/@@download/ENCFF037ZVB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF652LXG bigBed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF616MAQ 12951219 ENCODE Processing Pipeline d481c6402846a2b7482a9bb42c7efa51 https://www.encodeproject.org/files/ENCFF652LXG/@@download/ENCFF652LXG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF813GRD bigBed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF946JSV 13042811 ENCODE Processing Pipeline 8e82dd096bd7d589ece625d12c9eb263 https://www.encodeproject.org/files/ENCFF813GRD/@@download/ENCFF813GRD.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF608OHW bed narrowPeak conservative idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF112FKQ, ENCFF419RSJ, ENCFF616MAQ, ENCFF946JSV 764582 ENCODE Processing Pipeline 438a855aa808a80b2c2dfe0f2c636f35 https://www.encodeproject.org/files/ENCFF608OHW/@@download/ENCFF608OHW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF442UVU bigBed narrowPeak conservative idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF608OHW 1463966 ENCODE Processing Pipeline bbdbc41bdf4f35b1428841ff6bcd2eca https://www.encodeproject.org/files/ENCFF442UVU/@@download/ENCFF442UVU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF251TUO bed narrowPeak optimal idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF112FKQ, ENCFF419RSJ, ENCFF616MAQ, ENCFF946JSV 782154 ENCODE Processing Pipeline 215160c3fca539dd4182be198efe9256 https://www.encodeproject.org/files/ENCFF251TUO/@@download/ENCFF251TUO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF532VHE bigBed narrowPeak optimal idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF251TUO 1493424 ENCODE Processing Pipeline d430cab0f3414381fd6664fe50257aa7 https://www.encodeproject.org/files/ENCFF532VHE/@@download/ENCFF532VHE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF078HLR bigWig signal p-value ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF684RLL 1326847170 ENCODE Processing Pipeline f38ff382ecd9c48fa3911b70de2f77dc https://www.encodeproject.org/files/ENCFF078HLR/@@download/ENCFF078HLR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF888KTA bigWig signal p-value ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF031XNE, ENCFF203ABR 1111023160 ENCODE Processing Pipeline d9d42e865ad1bd5928bdcb7de166d5a6 https://www.encodeproject.org/files/ENCFF888KTA/@@download/ENCFF888KTA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF915VSK bigWig signal p-value ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF031XNE, ENCFF203ABR, ENCFF684RLL 1408084945 ENCODE Processing Pipeline 1d2ce6f1f4484900793f98993f7ca87e https://www.encodeproject.org/files/ENCFF915VSK/@@download/ENCFF915VSK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF176SCY bigWig fold change over control ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF684RLL 1237468565 ENCODE Processing Pipeline 8c22556014b4da1fd7893875e76dd66c https://www.encodeproject.org/files/ENCFF176SCY/@@download/ENCFF176SCY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF962ACO bigWig fold change over control ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF031XNE, ENCFF203ABR 1011512443 ENCODE Processing Pipeline c449c1cef8b0b9b146f7f9b9427ac268 https://www.encodeproject.org/files/ENCFF962ACO/@@download/ENCFF962ACO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF038AIJ bigWig fold change over control ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF031XNE, ENCFF203ABR, ENCFF684RLL 1648735752 ENCODE Processing Pipeline 250fb21e1e7049e542241d63db26ed37 https://www.encodeproject.org/files/ENCFF038AIJ/@@download/ENCFF038AIJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF256WMD bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF684RLL 6552104 ENCODE Processing Pipeline 6239b30ab915bf541e55aa8971e430a6 https://www.encodeproject.org/files/ENCFF256WMD/@@download/ENCFF256WMD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF387MFJ bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF031XNE, ENCFF203ABR 6724748 ENCODE Processing Pipeline 0a78df47cbdc86d8067f108c503904c7 https://www.encodeproject.org/files/ENCFF387MFJ/@@download/ENCFF387MFJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF829PMF bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF031XNE, ENCFF203ABR, ENCFF684RLL 6953725 ENCODE Processing Pipeline b6be92d13e840672aa072f4aeee81db8 https://www.encodeproject.org/files/ENCFF829PMF/@@download/ENCFF829PMF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF394VRY bigBed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF256WMD 13177262 ENCODE Processing Pipeline e3b7c44eb5626f5e69529f862a07b8ff https://www.encodeproject.org/files/ENCFF394VRY/@@download/ENCFF394VRY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF625YYP bigBed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF387MFJ 13012676 ENCODE Processing Pipeline 50d84d7b8b3a5c68adf1dd1293a5e0e3 https://www.encodeproject.org/files/ENCFF625YYP/@@download/ENCFF625YYP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF111HCX bigBed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF829PMF 13177893 ENCODE Processing Pipeline ceaf8b883fa92d28d72b5aed67dddf88 https://www.encodeproject.org/files/ENCFF111HCX/@@download/ENCFF111HCX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF195LUF bigBed narrowPeak conservative idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF929CRH 1552734 ENCODE Processing Pipeline c4b3bd8ca260cf613e72ee1e8378caf7 https://www.encodeproject.org/files/ENCFF195LUF/@@download/ENCFF195LUF.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF510XOE bed narrowPeak optimal idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF256WMD, ENCFF387MFJ, ENCFF829PMF 798056 ENCODE Processing Pipeline 5d718eed7ca4f03d74d810546354f146 https://www.encodeproject.org/files/ENCFF510XOE/@@download/ENCFF510XOE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF929CRH bed narrowPeak conservative idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF256WMD, ENCFF387MFJ, ENCFF829PMF 781802 ENCODE Processing Pipeline 070e19816135fe9dfb9948841ade8eb3 https://www.encodeproject.org/files/ENCFF929CRH/@@download/ENCFF929CRH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF953MEZ bigBed narrowPeak optimal idr thresholded peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF510XOE 1580180 ENCODE Processing Pipeline 34a2a9c85738f956df8ba37867f1aa8d https://www.encodeproject.org/files/ENCFF953MEZ/@@download/ENCFF953MEZ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF431JNS fastq reads ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF896JQM 1960846702 Michael Snyder, Stanford 87652b42e381c3e39ea7e0045fc5e818 https://www.encodeproject.org/files/ENCFF431JNS/@@download/ENCFF431JNS.fastq.gz Illumina HiSeq 2000 /files/ENCFF137EJL/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF896JQM fastq reads ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF431JNS 2172295580 Michael Snyder, Stanford c3f653761afd5bb2176847ccbf9b6bb0 https://www.encodeproject.org/files/ENCFF896JQM/@@download/ENCFF896JQM.fastq.gz Illumina HiSeq 2000 /files/ENCFF643BIM/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF976CUE fastq reads ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF810FJD 4593977574 Michael Snyder, Stanford e872b3f4a2c70c299d20116bedda7697 https://www.encodeproject.org/files/ENCFF976CUE/@@download/ENCFF976CUE.fastq.gz Illumina HiSeq 2000 /files/ENCFF893RME/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF810FJD fastq reads ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF976CUE 4213600947 Michael Snyder, Stanford 10ed6baecd5433ebf48cefcee4d334ea https://www.encodeproject.org/files/ENCFF810FJD/@@download/ENCFF810FJD.fastq.gz Illumina HiSeq 2000 /files/ENCFF452ELS/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF571UCS bam unfiltered alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF643CGH, ENCFF810FJD, ENCFF976CUE 8685651214 ENCODE Processing Pipeline 19ea5d840b25b8e4e1acf3db7875e4f5 https://www.encodeproject.org/files/ENCFF571UCS/@@download/ENCFF571UCS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF575LRB bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF643CGH, ENCFF810FJD, ENCFF976CUE 4521399020 ENCODE Processing Pipeline 89b7ecb31e47f1086430c4199d429297 https://www.encodeproject.org/files/ENCFF575LRB/@@download/ENCFF575LRB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF391QJE bam unfiltered alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF807MUK, ENCFF810FJD, ENCFF976CUE 8684386464 ENCODE Processing Pipeline 0e8f3df444cc08d974493d1375ffb836 https://www.encodeproject.org/files/ENCFF391QJE/@@download/ENCFF391QJE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF556SYP bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF807MUK, ENCFF810FJD, ENCFF976CUE 4515806518 ENCODE Processing Pipeline a2a56099cdb73789257e32a50a1c04dc https://www.encodeproject.org/files/ENCFF556SYP/@@download/ENCFF556SYP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF360HTD fastq reads ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF013WQU 3131732974 Michael Snyder, Stanford 647ac694f81a5dbd3440384d2d865c83 https://www.encodeproject.org/files/ENCFF360HTD/@@download/ENCFF360HTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF137EJL/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF013WQU fastq reads ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF360HTD 3231003151 Michael Snyder, Stanford f60ec0ff0b71456881ec17e511d7dfa4 https://www.encodeproject.org/files/ENCFF013WQU/@@download/ENCFF013WQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF643BIM/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF196VJH bam unfiltered alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF013WQU, ENCFF360HTD, ENCFF431JNS, ENCFF807MUK, ENCFF896JQM 9806939894 ENCODE Processing Pipeline 155d64d1c1660069429d020152af751f https://www.encodeproject.org/files/ENCFF196VJH/@@download/ENCFF196VJH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF980POK bam unfiltered alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF013WQU, ENCFF360HTD, ENCFF431JNS, ENCFF643CGH, ENCFF896JQM 9808244113 ENCODE Processing Pipeline a739ef73c64ea0c59bcc8089e398f38c https://www.encodeproject.org/files/ENCFF980POK/@@download/ENCFF980POK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF225ESX bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF013WQU, ENCFF360HTD, ENCFF431JNS, ENCFF807MUK, ENCFF896JQM 3925385495 ENCODE Processing Pipeline 372b20c333f5bce72c2727b6b5a8ad00 https://www.encodeproject.org/files/ENCFF225ESX/@@download/ENCFF225ESX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF024SWK bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF013WQU, ENCFF360HTD, ENCFF431JNS, ENCFF643CGH, ENCFF896JQM 3930416888 ENCODE Processing Pipeline 24dd3bb0188880b0d3e5485ca459e4c6 https://www.encodeproject.org/files/ENCFF024SWK/@@download/ENCFF024SWK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF282SYC bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF225ESX, ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 6933799 ENCODE Processing Pipeline d0eefe31099d8763eaa46cf1dad75fd8 https://www.encodeproject.org/files/ENCFF282SYC/@@download/ENCFF282SYC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF142BLK bed narrowPeak conservative idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF105NHW, ENCFF282SYC, ENCFF828HUH 1776056 ENCODE Processing Pipeline 33d089b01deee35e91a613600d1cbe65 https://www.encodeproject.org/files/ENCFF142BLK/@@download/ENCFF142BLK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF264VSA bigWig signal p-value ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 1429244608 ENCODE Processing Pipeline 9251513d6c86c041d6d6c59802bfefda https://www.encodeproject.org/files/ENCFF264VSA/@@download/ENCFF264VSA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF195EMJ bigWig fold change over control ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF225ESX, ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 1985872341 ENCODE Processing Pipeline e253a293ffef03359444a805d3358ba5 https://www.encodeproject.org/files/ENCFF195EMJ/@@download/ENCFF195EMJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF265OKQ bigBed narrowPeak conservative idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF142BLK 3216139 ENCODE Processing Pipeline ded38cfc9cd04bd516b44ed98b973609 https://www.encodeproject.org/files/ENCFF265OKQ/@@download/ENCFF265OKQ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF419OLB bigBed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF105NHW 12942298 ENCODE Processing Pipeline c78a4bfcbb45a6b721a6b86a2527a798 https://www.encodeproject.org/files/ENCFF419OLB/@@download/ENCFF419OLB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF338FAH bigBed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF282SYC 12677204 ENCODE Processing Pipeline c16a1f1f67e033d2a5b4e5144003d441 https://www.encodeproject.org/files/ENCFF338FAH/@@download/ENCFF338FAH.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF340DHY bigBed narrowPeak optimal idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF788CHY 3305890 ENCODE Processing Pipeline 2ca846a0aec00903de8b85a7ea9c68c6 https://www.encodeproject.org/files/ENCFF340DHY/@@download/ENCFF340DHY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF525HPF bigWig fold change over control ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 1548875468 ENCODE Processing Pipeline 482d2e4ee1a0d86c3974e572558c19df https://www.encodeproject.org/files/ENCFF525HPF/@@download/ENCFF525HPF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF828HUH bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF225ESX, ENCFF240KUX, ENCFF564TQN 6890491 ENCODE Processing Pipeline 0f2ac077aab5dae5d0181d0a59da7483 https://www.encodeproject.org/files/ENCFF828HUH/@@download/ENCFF828HUH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF814VGO bigBed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF828HUH 12664646 ENCODE Processing Pipeline 08c7d2e2cf1680630bb0ce069f520d79 https://www.encodeproject.org/files/ENCFF814VGO/@@download/ENCFF814VGO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF788CHY bed narrowPeak optimal idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF105NHW, ENCFF282SYC, ENCFF828HUH 1817661 ENCODE Processing Pipeline 250df0fa4ddeb6f03963a6a3429bacff https://www.encodeproject.org/files/ENCFF788CHY/@@download/ENCFF788CHY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF229WSP bigWig fold change over control ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF225ESX, ENCFF240KUX, ENCFF564TQN 1463739854 ENCODE Processing Pipeline 385046534f3b7ade2956563bdba76572 https://www.encodeproject.org/files/ENCFF229WSP/@@download/ENCFF229WSP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF541PBM bigWig signal p-value ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF225ESX, ENCFF240KUX, ENCFF564TQN 1458233255 ENCODE Processing Pipeline 467ecd1edf5d61696b8a966ab98adbf4 https://www.encodeproject.org/files/ENCFF541PBM/@@download/ENCFF541PBM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF500SRD bigWig signal p-value ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF225ESX, ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 1803901044 ENCODE Processing Pipeline f48f8378b64432d541590b83dc043d08 https://www.encodeproject.org/files/ENCFF500SRD/@@download/ENCFF500SRD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF105NHW bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 6851081 ENCODE Processing Pipeline 3e1274b21839788d9b813acfac2a5dfe https://www.encodeproject.org/files/ENCFF105NHW/@@download/ENCFF105NHW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF460RRC bigWig fold change over control ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF024SWK, ENCFF169DGZ, ENCFF690RUG 1481657586 ENCODE Processing Pipeline b6a0e63224b101a7f6438818b82cd0cf https://www.encodeproject.org/files/ENCFF460RRC/@@download/ENCFF460RRC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF447RBM bigWig fold change over control ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 1588376696 ENCODE Processing Pipeline b6301a9162b3a9e576b259c4c6a27245 https://www.encodeproject.org/files/ENCFF447RBM/@@download/ENCFF447RBM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF344RVQ bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 6999162 ENCODE Processing Pipeline 01a2a689272bde087cfe4e7d63617d54 https://www.encodeproject.org/files/ENCFF344RVQ/@@download/ENCFF344RVQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF464HJB bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF024SWK, ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 6973738 ENCODE Processing Pipeline 9778d60be350248b0dafe88ab9958115 https://www.encodeproject.org/files/ENCFF464HJB/@@download/ENCFF464HJB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF182TTS bigBed narrowPeak optimal idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF855KNL 3335903 ENCODE Processing Pipeline 073db2b9a7d88a412944038b0735c629 https://www.encodeproject.org/files/ENCFF182TTS/@@download/ENCFF182TTS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF673IVY bigWig signal p-value ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF024SWK, ENCFF169DGZ, ENCFF690RUG 1345974184 ENCODE Processing Pipeline 03e1730df813e1a692fb7d12ebf04cbd https://www.encodeproject.org/files/ENCFF673IVY/@@download/ENCFF673IVY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF620NBC bigWig signal p-value ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 1370583614 ENCODE Processing Pipeline 48336a47c7ff451a8faf22eed43c2cc6 https://www.encodeproject.org/files/ENCFF620NBC/@@download/ENCFF620NBC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF934BWM bigWig fold change over control ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF024SWK, ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 2003919058 ENCODE Processing Pipeline f8ea7ddea3a64d75bc351718a09a4997 https://www.encodeproject.org/files/ENCFF934BWM/@@download/ENCFF934BWM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF413TLE bed narrowPeak conservative idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF224IKQ, ENCFF344RVQ, ENCFF419RSJ, ENCFF464HJB 1786043 ENCODE Processing Pipeline ecebff0078bc4a19de55c27b329ca2c1 https://www.encodeproject.org/files/ENCFF413TLE/@@download/ENCFF413TLE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF224IKQ bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF024SWK, ENCFF169DGZ, ENCFF690RUG 6927188 ENCODE Processing Pipeline ead8308e5c66acefd36ecc7d84711af5 https://www.encodeproject.org/files/ENCFF224IKQ/@@download/ENCFF224IKQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF127AGC bigBed narrowPeak conservative idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF413TLE 3241513 ENCODE Processing Pipeline d09999e532d34d56ca463876ed2f456e https://www.encodeproject.org/files/ENCFF127AGC/@@download/ENCFF127AGC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF651PRW bigWig signal p-value ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF024SWK, ENCFF169DGZ, ENCFF575LRB, ENCFF690RUG 1882185166 ENCODE Processing Pipeline 04c0956c393a2150bed39cec2817b893 https://www.encodeproject.org/files/ENCFF651PRW/@@download/ENCFF651PRW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF268CWC bigBed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF224IKQ 12722667 ENCODE Processing Pipeline 9bb6b7239d7b1b7ff256923df8749c0f https://www.encodeproject.org/files/ENCFF268CWC/@@download/ENCFF268CWC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF888KNZ bigBed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF344RVQ 13136036 ENCODE Processing Pipeline f35ca7025df3c3a42d0a34c4067c0cfc https://www.encodeproject.org/files/ENCFF888KNZ/@@download/ENCFF888KNZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF265MMN bigBed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF464HJB 12741345 ENCODE Processing Pipeline 23b43b6b2282c2f8708ba27a96adcc61 https://www.encodeproject.org/files/ENCFF265MMN/@@download/ENCFF265MMN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF855KNL bed narrowPeak optimal idr thresholded peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF224IKQ, ENCFF344RVQ, ENCFF419RSJ, ENCFF464HJB 1830825 ENCODE Processing Pipeline ae0cfe4bf5df5ff4c50aa44b0bf17ef0 https://www.encodeproject.org/files/ENCFF855KNL/@@download/ENCFF855KNL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF404NEP fastq reads ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF355NCQ 2539498717 Michael Snyder, Stanford eb5705e9385c5293f7186900cebbaab8 https://www.encodeproject.org/files/ENCFF404NEP/@@download/ENCFF404NEP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF355NCQ fastq reads ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF404NEP 2576583398 Michael Snyder, Stanford 77821bd4589bbacd14e2085d05f62cb3 https://www.encodeproject.org/files/ENCFF355NCQ/@@download/ENCFF355NCQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF801FWC fastq reads ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF455GIL 2396839718 Michael Snyder, Stanford aa38f29da81e402a7c9a139e42b5b008 https://www.encodeproject.org/files/ENCFF801FWC/@@download/ENCFF801FWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF455GIL fastq reads ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF801FWC 2433631348 Michael Snyder, Stanford 3fe942a870c805ed982daf8e2c61bab5 https://www.encodeproject.org/files/ENCFF455GIL/@@download/ENCFF455GIL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF497HJM bam unfiltered alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF355NCQ, ENCFF404NEP, ENCFF643CGH 5494025977 ENCODE Processing Pipeline f9f15d19374254af3a9bf8f4effb353c https://www.encodeproject.org/files/ENCFF497HJM/@@download/ENCFF497HJM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF254LLT bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF455GIL, ENCFF643CGH, ENCFF801FWC 3890414007 ENCODE Processing Pipeline 04778eb9876aca243fc9960579bd3a1f https://www.encodeproject.org/files/ENCFF254LLT/@@download/ENCFF254LLT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF150YTV bam unfiltered alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF455GIL, ENCFF643CGH, ENCFF801FWC 5230562763 ENCODE Processing Pipeline 5eccef286eecc8465ee816cdb57ed8c1 https://www.encodeproject.org/files/ENCFF150YTV/@@download/ENCFF150YTV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF615VMZ bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF355NCQ, ENCFF404NEP, ENCFF643CGH 4002336687 ENCODE Processing Pipeline eb68616129791dacb05b6d95aafdcb63 https://www.encodeproject.org/files/ENCFF615VMZ/@@download/ENCFF615VMZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF101OLZ bigBed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF628OPB 11151268 ENCODE Processing Pipeline 416704d84593bbb7a142356f34c841f6 https://www.encodeproject.org/files/ENCFF101OLZ/@@download/ENCFF101OLZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF903ZBV bigWig signal p-value ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF615VMZ 1102025723 ENCODE Processing Pipeline 98636ab90acacdc0e4522e883ba9738b https://www.encodeproject.org/files/ENCFF903ZBV/@@download/ENCFF903ZBV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF247KYH bigWig signal p-value ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF254LLT, ENCFF615VMZ, ENCFF910IKB 1672222976 ENCODE Processing Pipeline 9bbad7e74a96bc6c5fd8fcb037bd6876 https://www.encodeproject.org/files/ENCFF247KYH/@@download/ENCFF247KYH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF089TYY bigWig fold change over control ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF615VMZ 1088912495 ENCODE Processing Pipeline a444c153d6ff2cb54b280859b8f42205 https://www.encodeproject.org/files/ENCFF089TYY/@@download/ENCFF089TYY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF478IFD bed narrowPeak conservative idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF249ABV, ENCFF419RSJ, ENCFF628OPB, ENCFF774CMI 16381 ENCODE Processing Pipeline e86211e3309e6217bc1b79e2729be117 https://www.encodeproject.org/files/ENCFF478IFD/@@download/ENCFF478IFD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF736JOY bigWig signal p-value ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF254LLT, ENCFF910IKB 1049926324 ENCODE Processing Pipeline c123001cfb28bc48ec330a29e0835402 https://www.encodeproject.org/files/ENCFF736JOY/@@download/ENCFF736JOY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF602XBX bigBed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF249ABV 11277692 ENCODE Processing Pipeline e0dde71534821cf37a0d0bc810918a6c https://www.encodeproject.org/files/ENCFF602XBX/@@download/ENCFF602XBX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF774CMI bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF254LLT, ENCFF910IKB 5730955 ENCODE Processing Pipeline 2e1d48d35e5525394386017f7ad234fc https://www.encodeproject.org/files/ENCFF774CMI/@@download/ENCFF774CMI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF249ABV bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF615VMZ 5671758 ENCODE Processing Pipeline cf23b847fb636bf2951c7346a2114296 https://www.encodeproject.org/files/ENCFF249ABV/@@download/ENCFF249ABV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF094XPM bed narrowPeak optimal idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF249ABV, ENCFF419RSJ, ENCFF628OPB, ENCFF774CMI 38374 ENCODE Processing Pipeline 2c022b5939304c36a2949f7d583a06b6 https://www.encodeproject.org/files/ENCFF094XPM/@@download/ENCFF094XPM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF628OPB bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF254LLT, ENCFF615VMZ, ENCFF910IKB 6916082 ENCODE Processing Pipeline 9321218f706121d6e4d4854d1ee75c00 https://www.encodeproject.org/files/ENCFF628OPB/@@download/ENCFF628OPB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF951GNT bigBed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF774CMI 11192147 ENCODE Processing Pipeline 270121c57518bcf32fabd24e278ce897 https://www.encodeproject.org/files/ENCFF951GNT/@@download/ENCFF951GNT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF554OJO bigBed narrowPeak conservative idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF478IFD 99395 ENCODE Processing Pipeline d919f7cca26c55994ea58bdae0d00fec https://www.encodeproject.org/files/ENCFF554OJO/@@download/ENCFF554OJO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF892TYC bigBed narrowPeak optimal idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF094XPM 146333 ENCODE Processing Pipeline 7c5c464551c6d0989f333ba274d13b11 https://www.encodeproject.org/files/ENCFF892TYC/@@download/ENCFF892TYC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF365MIR bigWig fold change over control ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF254LLT, ENCFF910IKB 1096616742 ENCODE Processing Pipeline 3d50c59a9d88b62ac1ead9c7fedfff46 https://www.encodeproject.org/files/ENCFF365MIR/@@download/ENCFF365MIR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF305XLQ bigWig fold change over control ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF254LLT, ENCFF615VMZ, ENCFF910IKB 2025963926 ENCODE Processing Pipeline 15cc4d33f3d3a5508b7e62612e8b24c6 https://www.encodeproject.org/files/ENCFF305XLQ/@@download/ENCFF305XLQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF633AHF bam unfiltered alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF355NCQ, ENCFF404NEP, ENCFF807MUK 5490316304 ENCODE Processing Pipeline c64004475230dc4ddd4887fc0ffed130 https://www.encodeproject.org/files/ENCFF633AHF/@@download/ENCFF633AHF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF665FLL bam unfiltered alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF455GIL, ENCFF801FWC, ENCFF807MUK 5226659356 ENCODE Processing Pipeline fd323a5d98832681016d4c23f3377cbf https://www.encodeproject.org/files/ENCFF665FLL/@@download/ENCFF665FLL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF780RFE bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF355NCQ, ENCFF404NEP, ENCFF807MUK 3999419237 ENCODE Processing Pipeline f311896c0e46ea900be8215d9546cb3d https://www.encodeproject.org/files/ENCFF780RFE/@@download/ENCFF780RFE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF264WWV bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF455GIL, ENCFF801FWC, ENCFF807MUK 3888439657 ENCODE Processing Pipeline 41d0138cd75ea13e380867704f465952 https://www.encodeproject.org/files/ENCFF264WWV/@@download/ENCFF264WWV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF974NAJ bigWig signal p-value ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF264WWV, ENCFF581ZJL 970930247 ENCODE Processing Pipeline a9a069ea2534029a7ef157de79a79b09 https://www.encodeproject.org/files/ENCFF974NAJ/@@download/ENCFF974NAJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF601EZO bigWig signal p-value ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF780RFE 952748319 ENCODE Processing Pipeline 7e65b10590a83745a3bbdcca0e5b9bab https://www.encodeproject.org/files/ENCFF601EZO/@@download/ENCFF601EZO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF516LKO bigWig signal p-value ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264WWV, ENCFF581ZJL, ENCFF780RFE 1759898337 ENCODE Processing Pipeline 53fdb675a4d96a8b8212a81117f130cb https://www.encodeproject.org/files/ENCFF516LKO/@@download/ENCFF516LKO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF765PCR bigWig fold change over control ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF264WWV, ENCFF581ZJL 1097617176 ENCODE Processing Pipeline 4b83d835c1a03285b91755f8b289bc43 https://www.encodeproject.org/files/ENCFF765PCR/@@download/ENCFF765PCR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF519QDT bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264WWV, ENCFF581ZJL, ENCFF780RFE 6911391 ENCODE Processing Pipeline 415635e07e7485975e6d987bd77b6789 https://www.encodeproject.org/files/ENCFF519QDT/@@download/ENCFF519QDT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002NNQ bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF780RFE 5669054 ENCODE Processing Pipeline f6cd593476efa8c5c75daf455dae72c3 https://www.encodeproject.org/files/ENCFF002NNQ/@@download/ENCFF002NNQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF087GYK bigBed narrowPeak conservative idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF145KNX 97697 ENCODE Processing Pipeline 3f5069303b5d81b13b535ef646f4c9f6 https://www.encodeproject.org/files/ENCFF087GYK/@@download/ENCFF087GYK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF818GXC bigWig fold change over control ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF780RFE 1086978429 ENCODE Processing Pipeline 7db3b40f92e5d20a52f9c02d547ab37f https://www.encodeproject.org/files/ENCFF818GXC/@@download/ENCFF818GXC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF151NHI bigWig fold change over control ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264WWV, ENCFF581ZJL, ENCFF780RFE 2050584764 ENCODE Processing Pipeline af31c34077c3ef9e88eee729b2d45afe https://www.encodeproject.org/files/ENCFF151NHI/@@download/ENCFF151NHI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF247BLA bigBed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF002NNQ 11256854 ENCODE Processing Pipeline e59374ff05d11c74736579f1cf3a2525 https://www.encodeproject.org/files/ENCFF247BLA/@@download/ENCFF247BLA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF398TWC bed narrowPeak optimal idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF002NNQ, ENCFF039VDD, ENCFF519QDT 39607 ENCODE Processing Pipeline 95c94c1100d8e4fdb273a6e4dda01157 https://www.encodeproject.org/files/ENCFF398TWC/@@download/ENCFF398TWC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF039VDD bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF264WWV, ENCFF581ZJL 5728057 ENCODE Processing Pipeline 0cca0ee2088dd951e375f9451e72b208 https://www.encodeproject.org/files/ENCFF039VDD/@@download/ENCFF039VDD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF145KNX bed narrowPeak conservative idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF002NNQ, ENCFF039VDD, ENCFF519QDT 16270 ENCODE Processing Pipeline 1b865f82d0bd75180d79f396ff163910 https://www.encodeproject.org/files/ENCFF145KNX/@@download/ENCFF145KNX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF818PVV bigBed narrowPeak optimal idr thresholded peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF398TWC 147340 ENCODE Processing Pipeline d14a8132a30ba4ca19f66821c7af8e0c https://www.encodeproject.org/files/ENCFF818PVV/@@download/ENCFF818PVV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF682YTU bigBed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF039VDD 11179318 ENCODE Processing Pipeline ceac90860fdd5f722a7d4abd3352042d https://www.encodeproject.org/files/ENCFF682YTU/@@download/ENCFF682YTU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF509PPX bigBed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF519QDT 11135539 ENCODE Processing Pipeline f6e6917afac12163c529c4d6148b1efe https://www.encodeproject.org/files/ENCFF509PPX/@@download/ENCFF509PPX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF921JLH fastq reads ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 1 50 single-ended 1751151420 Richard Myers, HAIB c236e7b1991e83290250c7c099833058 SRA:SRR5331525 https://www.encodeproject.org/files/ENCFF921JLH/@@download/ENCFF921JLH.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JZL/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF350SEQ fastq reads ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 1 50 single-ended 1059310410 Richard Myers, HAIB 767141de59443fc427cb82686098e19f SRA:SRR5331526 https://www.encodeproject.org/files/ENCFF350SEQ/@@download/ENCFF350SEQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JZL/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF214GRW bam unfiltered alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 50 ENCFF350SEQ, ENCFF643CGH 1080345345 ENCODE Processing Pipeline 09347256ac793160e3cf969223e00124 https://www.encodeproject.org/files/ENCFF214GRW/@@download/ENCFF214GRW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF992GVS bam unfiltered alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 50 ENCFF350SEQ, ENCFF807MUK 1078560503 ENCODE Processing Pipeline 890d9769d1972c9a1c91d7a08098f086 https://www.encodeproject.org/files/ENCFF992GVS/@@download/ENCFF992GVS.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF185KPG bam unfiltered alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 50 ENCFF807MUK, ENCFF921JLH 1831967389 ENCODE Processing Pipeline 1cdcc441f59dcba9dcad3cfab95f7d4f https://www.encodeproject.org/files/ENCFF185KPG/@@download/ENCFF185KPG.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF899AJU bam unfiltered alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 50 ENCFF643CGH, ENCFF921JLH 1835538210 ENCODE Processing Pipeline ab031a87d9cb6f82d155b1f1bf85262e https://www.encodeproject.org/files/ENCFF899AJU/@@download/ENCFF899AJU.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF077SLS bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 50 ENCFF350SEQ, ENCFF807MUK 787240767 ENCODE Processing Pipeline b7a07710d94c341399003c110a04cb65 https://www.encodeproject.org/files/ENCFF077SLS/@@download/ENCFF077SLS.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF895OOM bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 50 ENCFF350SEQ, ENCFF643CGH 787068594 ENCODE Processing Pipeline bff009d674d57b57f4752f78960998fc https://www.encodeproject.org/files/ENCFF895OOM/@@download/ENCFF895OOM.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF092EIK bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 50 ENCFF643CGH, ENCFF921JLH 1257875124 ENCODE Processing Pipeline e5017a41f9b7e81d2cfb35afd9088f44 https://www.encodeproject.org/files/ENCFF092EIK/@@download/ENCFF092EIK.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF012XJU bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 50 ENCFF807MUK, ENCFF921JLH 1258126501 ENCODE Processing Pipeline 8caae9c190b52e530dca2aec9073c804 https://www.encodeproject.org/files/ENCFF012XJU/@@download/ENCFF012XJU.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF888WJV bigWig signal p-value ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF092EIK, ENCFF167KVB 482225533 ENCODE Processing Pipeline 9eb807d3ca9c3d94a0b751066ab52a66 https://www.encodeproject.org/files/ENCFF888WJV/@@download/ENCFF888WJV.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF855MUE bigWig signal p-value ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF012XJU, ENCFF943PEE 492870668 ENCODE Processing Pipeline cab91331f21138529f8c12c1ba5eea83 https://www.encodeproject.org/files/ENCFF855MUE/@@download/ENCFF855MUE.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF104SOW bigWig signal p-value ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF167KVB, ENCFF895OOM 447750635 ENCODE Processing Pipeline 267bb9fa4a772961a6267571c54b6900 https://www.encodeproject.org/files/ENCFF104SOW/@@download/ENCFF104SOW.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF083OFO bigWig fold change over control ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF167KVB, ENCFF895OOM 394078112 ENCODE Processing Pipeline 815396c2d269f715ec181943ad93a5d6 https://www.encodeproject.org/files/ENCFF083OFO/@@download/ENCFF083OFO.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF192BGD bigWig fold change over control ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF092EIK, ENCFF167KVB, ENCFF895OOM 698131541 ENCODE Processing Pipeline c1ee4ded1a9ba96f7b324ff68098ab1c https://www.encodeproject.org/files/ENCFF192BGD/@@download/ENCFF192BGD.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF180SMM bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF167KVB, ENCFF895OOM 5402456 ENCODE Processing Pipeline 880151362de313616f4996cb3dacd393 https://www.encodeproject.org/files/ENCFF180SMM/@@download/ENCFF180SMM.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF842FHZ bigBed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF305SID 13244330 ENCODE Processing Pipeline 32d9d8ee50b33dd27dac24687236f418 https://www.encodeproject.org/files/ENCFF842FHZ/@@download/ENCFF842FHZ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF617NCB bigBed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF724DWZ 13422239 ENCODE Processing Pipeline 8e74b8722c5ca4f70d379df789d5b3b4 https://www.encodeproject.org/files/ENCFF617NCB/@@download/ENCFF617NCB.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF191PCD bigBed narrowPeak conservative idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF571PSU 920019 ENCODE Processing Pipeline a56aafed62a4a0ce8901aae1ef44c5bc https://www.encodeproject.org/files/ENCFF191PCD/@@download/ENCFF191PCD.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF399XDT bigWig signal p-value ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF077SLS, ENCFF943PEE 437579206 ENCODE Processing Pipeline 99090ec622f3d25f5d4bc9e870b46644 https://www.encodeproject.org/files/ENCFF399XDT/@@download/ENCFF399XDT.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF254ROB bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF012XJU, ENCFF077SLS, ENCFF943PEE 6360415 ENCODE Processing Pipeline 753004b6ae128496d124cd7d4f6c1467 https://www.encodeproject.org/files/ENCFF254ROB/@@download/ENCFF254ROB.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF597VAW bigBed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF981TNW 13076355 ENCODE Processing Pipeline 0facc80da170230553ef6f5883e6bf87 https://www.encodeproject.org/files/ENCFF597VAW/@@download/ENCFF597VAW.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF022ZFZ bigWig fold change over control ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF077SLS, ENCFF943PEE 396886423 ENCODE Processing Pipeline ab93f7c208317930a4f9750093a9fa1d https://www.encodeproject.org/files/ENCFF022ZFZ/@@download/ENCFF022ZFZ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF167QAZ bigBed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF060UON 13240320 ENCODE Processing Pipeline 53f45f2580322f76d6f152007d984d48 https://www.encodeproject.org/files/ENCFF167QAZ/@@download/ENCFF167QAZ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF571PSU bed narrowPeak conservative idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF060UON, ENCFF254ROB, ENCFF981TNW 435670 ENCODE Processing Pipeline 81220b56844539519bff04e96db16c4a https://www.encodeproject.org/files/ENCFF571PSU/@@download/ENCFF571PSU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF305SID bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF092EIK, ENCFF167KVB 5875813 ENCODE Processing Pipeline 7912a0ddbe148c9054bee50d5030def9 https://www.encodeproject.org/files/ENCFF305SID/@@download/ENCFF305SID.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF724DWZ bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF092EIK, ENCFF167KVB, ENCFF895OOM 6360974 ENCODE Processing Pipeline 1e31bdeeacd5cf9e8a76461660fceb43 https://www.encodeproject.org/files/ENCFF724DWZ/@@download/ENCFF724DWZ.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF060UON bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF012XJU, ENCFF943PEE 5878604 ENCODE Processing Pipeline bd67f7069e6e6856ed84be2f0a2f89af https://www.encodeproject.org/files/ENCFF060UON/@@download/ENCFF060UON.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF480DSN bigBed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF254ROB 13417075 ENCODE Processing Pipeline bc3ede8449338c6b772a2d33a0a01e75 https://www.encodeproject.org/files/ENCFF480DSN/@@download/ENCFF480DSN.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF450SOG bed narrowPeak optimal idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF060UON, ENCFF254ROB, ENCFF981TNW 454562 ENCODE Processing Pipeline 97db8e93f9a5aa34a7c3dc136cde0431 https://www.encodeproject.org/files/ENCFF450SOG/@@download/ENCFF450SOG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF855TOS bigBed narrowPeak optimal idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF450SOG 949119 ENCODE Processing Pipeline 40cfcfb1ef354369d238f0d5c1265fd8 https://www.encodeproject.org/files/ENCFF855TOS/@@download/ENCFF855TOS.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF716RLN bigWig signal p-value ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF012XJU, ENCFF077SLS, ENCFF943PEE 569193053 ENCODE Processing Pipeline 1864cbb4baa14656f1752ef9af7ef3be https://www.encodeproject.org/files/ENCFF716RLN/@@download/ENCFF716RLN.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF973JHV bigWig fold change over control ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF092EIK, ENCFF167KVB 481492284 ENCODE Processing Pipeline 895659310be32c1fba2830f4c5088a33 https://www.encodeproject.org/files/ENCFF973JHV/@@download/ENCFF973JHV.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF215XMA bigWig fold change over control ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF012XJU, ENCFF077SLS, ENCFF943PEE 702648994 ENCODE Processing Pipeline 385bd71b4500817425a6ea7d54065311 https://www.encodeproject.org/files/ENCFF215XMA/@@download/ENCFF215XMA.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF754ASE bigBed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF180SMM 13079144 ENCODE Processing Pipeline 5ee334c0f74cf4c31be48ee5724f2a8e https://www.encodeproject.org/files/ENCFF754ASE/@@download/ENCFF754ASE.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF926MTA bed narrowPeak conservative idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF180SMM, ENCFF305SID, ENCFF419RSJ, ENCFF724DWZ 435764 ENCODE Processing Pipeline b54ea09bd9193576336854734b1b642a https://www.encodeproject.org/files/ENCFF926MTA/@@download/ENCFF926MTA.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF790IOM bigBed narrowPeak conservative idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF926MTA 921326 ENCODE Processing Pipeline ba3bb080f108cfb0e0380e8e9c4c4b62 https://www.encodeproject.org/files/ENCFF790IOM/@@download/ENCFF790IOM.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF209LZU bigBed narrowPeak optimal idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF613KAB 954410 ENCODE Processing Pipeline 2380552789b2f432ddb7a53a635d7758 https://www.encodeproject.org/files/ENCFF209LZU/@@download/ENCFF209LZU.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF858PBB bigWig signal p-value ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF092EIK, ENCFF167KVB, ENCFF895OOM 568855319 ENCODE Processing Pipeline 3a0274859595779b325969990a5e097e https://www.encodeproject.org/files/ENCFF858PBB/@@download/ENCFF858PBB.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF338ZRS bigWig fold change over control ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF012XJU, ENCFF943PEE 481712003 ENCODE Processing Pipeline 4f46fc52fa2dac5421cadb458d14c67d https://www.encodeproject.org/files/ENCFF338ZRS/@@download/ENCFF338ZRS.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF613KAB bed narrowPeak optimal idr thresholded peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF180SMM, ENCFF305SID, ENCFF419RSJ, ENCFF724DWZ 456421 ENCODE Processing Pipeline 520639ff104533331bd03278ccb235bd https://www.encodeproject.org/files/ENCFF613KAB/@@download/ENCFF613KAB.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF981TNW bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF077SLS, ENCFF943PEE 5403664 ENCODE Processing Pipeline 6d4779a856d29b4fdebf5465a2a6bd46 https://www.encodeproject.org/files/ENCFF981TNW/@@download/ENCFF981TNW.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF998QDV fastq reads ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF524IZD 2634870647 Michael Snyder, Stanford 2966bd65170b9710aca24b753fc33512 SRA:SRR6212890 https://www.encodeproject.org/files/ENCFF998QDV/@@download/ENCFF998QDV.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF009REX fastq reads ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF781ZAP 2694155646 Michael Snyder, Stanford edd23427b56d074428d9303c7ed9eab3 SRA:SRR6212891 https://www.encodeproject.org/files/ENCFF009REX/@@download/ENCFF009REX.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF781ZAP fastq reads ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF009REX 3371159924 Michael Snyder, Stanford bc7994d5d85ff0467a4ee97219111360 SRA:SRR6212891 https://www.encodeproject.org/files/ENCFF781ZAP/@@download/ENCFF781ZAP.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF524IZD fastq reads ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF998QDV 3215580372 Michael Snyder, Stanford 2f44fe360be601d27ae92236c2b3f88c SRA:SRR6212890 https://www.encodeproject.org/files/ENCFF524IZD/@@download/ENCFF524IZD.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF433ITT bam unfiltered alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF009REX, ENCFF781ZAP, ENCFF807MUK 6099142997 ENCODE Processing Pipeline 05f0da98b771691336abb50797492632 https://www.encodeproject.org/files/ENCFF433ITT/@@download/ENCFF433ITT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF217EFC bam unfiltered alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF009REX, ENCFF643CGH, ENCFF781ZAP 6110189246 ENCODE Processing Pipeline c8b37a2af9a7a29f2b6f03bc42447baa https://www.encodeproject.org/files/ENCFF217EFC/@@download/ENCFF217EFC.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF015NUW bam unfiltered alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF524IZD, ENCFF807MUK, ENCFF998QDV 5841993751 ENCODE Processing Pipeline 5418383a241d8ab3ce0465c5519a59fe https://www.encodeproject.org/files/ENCFF015NUW/@@download/ENCFF015NUW.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF405TLF bam unfiltered alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF524IZD, ENCFF643CGH, ENCFF998QDV 5852871779 ENCODE Processing Pipeline ce841559a7502c900b77699695de86d0 https://www.encodeproject.org/files/ENCFF405TLF/@@download/ENCFF405TLF.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF629GPG bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF524IZD, ENCFF807MUK, ENCFF998QDV 4639381839 ENCODE Processing Pipeline aa960ad4f74436ad0c2bc13fa0772238 https://www.encodeproject.org/files/ENCFF629GPG/@@download/ENCFF629GPG.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF978RGD bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF009REX, ENCFF781ZAP, ENCFF807MUK 4839330267 ENCODE Processing Pipeline dec543a245a600cdb4bde349b5eb3723 https://www.encodeproject.org/files/ENCFF978RGD/@@download/ENCFF978RGD.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF196XHX bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF524IZD, ENCFF643CGH, ENCFF998QDV 4643570241 ENCODE Processing Pipeline 9206570428fe14fb94a272b29b453aa7 https://www.encodeproject.org/files/ENCFF196XHX/@@download/ENCFF196XHX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF764FEJ bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF009REX, ENCFF643CGH, ENCFF781ZAP 4843526529 ENCODE Processing Pipeline 9792c90b539a9e0e7633a5c0a3a91c99 https://www.encodeproject.org/files/ENCFF764FEJ/@@download/ENCFF764FEJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF103HGK bigWig signal p-value ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF764FEJ, ENCFF810LLR 1636272350 ENCODE Processing Pipeline c634bfa5181905f0e9df100504626e41 https://www.encodeproject.org/files/ENCFF103HGK/@@download/ENCFF103HGK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF762PYF bigWig signal p-value ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF196XHX, ENCFF810LLR 1362160670 ENCODE Processing Pipeline c9c04236638f038a4af4d684e6210833 https://www.encodeproject.org/files/ENCFF762PYF/@@download/ENCFF762PYF.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF461CTI bigWig signal p-value ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF196XHX, ENCFF764FEJ, ENCFF810LLR 1925623996 ENCODE Processing Pipeline 333dd434c02b4387be81ba849d3c612c https://www.encodeproject.org/files/ENCFF461CTI/@@download/ENCFF461CTI.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF820UWE bigWig fold change over control ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF764FEJ, ENCFF810LLR 1683913997 ENCODE Processing Pipeline e8290682f1d921ebc9c981d71ec26d02 https://www.encodeproject.org/files/ENCFF820UWE/@@download/ENCFF820UWE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF076TXN bed narrowPeak optimal idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF132FHH, ENCFF148ZVH, ENCFF419RSJ, ENCFF571TBP 51414 ENCODE Processing Pipeline 24c3b9471c63f5b6bf932c39e032639e https://www.encodeproject.org/files/ENCFF076TXN/@@download/ENCFF076TXN.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF595ZPY bigWig fold change over control ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF196XHX, ENCFF810LLR 1680146365 ENCODE Processing Pipeline e5aef1c3984205001c4068542ebaf1be https://www.encodeproject.org/files/ENCFF595ZPY/@@download/ENCFF595ZPY.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF571TBP bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF764FEJ, ENCFF810LLR 6884171 ENCODE Processing Pipeline 463a78edb8f624096e130c4290199e84 https://www.encodeproject.org/files/ENCFF571TBP/@@download/ENCFF571TBP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF081VER bigBed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF571TBP 11038050 ENCODE Processing Pipeline 832f7f5c114813f5031294f0b4bc025a https://www.encodeproject.org/files/ENCFF081VER/@@download/ENCFF081VER.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF298SMO bigWig signal p-value ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF629GPG 1508714464 ENCODE Processing Pipeline abd06b3d8491937ab9f374ad5d069e2c https://www.encodeproject.org/files/ENCFF298SMO/@@download/ENCFF298SMO.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF680MNU bigWig signal p-value ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF978RGD 1518275491 ENCODE Processing Pipeline a5910362d55afa9b56c14c648a7cb332 https://www.encodeproject.org/files/ENCFF680MNU/@@download/ENCFF680MNU.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF148ZVH bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF196XHX, ENCFF810LLR 6702795 ENCODE Processing Pipeline 676e44a3a199f4e22f7021d4b8775463 https://www.encodeproject.org/files/ENCFF148ZVH/@@download/ENCFF148ZVH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF302IBG bigWig fold change over control ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF629GPG 1680287034 ENCODE Processing Pipeline e1b8ee8f5c38cd8ac37372ac9623b44a https://www.encodeproject.org/files/ENCFF302IBG/@@download/ENCFF302IBG.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF029GLM bigWig fold change over control ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF196XHX, ENCFF764FEJ, ENCFF810LLR 2232079684 ENCODE Processing Pipeline 1a816ef91afb87bc38db014285503738 https://www.encodeproject.org/files/ENCFF029GLM/@@download/ENCFF029GLM.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF617IZR bigWig signal p-value ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF629GPG, ENCFF978RGD 1961229590 ENCODE Processing Pipeline f3880c0ddd949b31e5a6eda60a6ad9df https://www.encodeproject.org/files/ENCFF617IZR/@@download/ENCFF617IZR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF132FHH bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF196XHX, ENCFF764FEJ, ENCFF810LLR 7306755 ENCODE Processing Pipeline 0e4cbfdb89443346b678d9d2449ecfc1 https://www.encodeproject.org/files/ENCFF132FHH/@@download/ENCFF132FHH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF664QJX bigBed narrowPeak optimal idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF076TXN 153849 ENCODE Processing Pipeline c4d87003d1789d7ee9fc01799cf74ec5 https://www.encodeproject.org/files/ENCFF664QJX/@@download/ENCFF664QJX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF152LSX bigBed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF132FHH 10885151 ENCODE Processing Pipeline 672d2a887751d86afe2de314370d99e8 https://www.encodeproject.org/files/ENCFF152LSX/@@download/ENCFF152LSX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF752HWT bigBed narrowPeak conservative idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF338TVS 100940 ENCODE Processing Pipeline 66aa6f6ae2aa9f624e1e403c81ec674c https://www.encodeproject.org/files/ENCFF752HWT/@@download/ENCFF752HWT.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF597VSW bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF978RGD 6851019 ENCODE Processing Pipeline 841e0af7d4d68b89ccbe1a526b4e707b https://www.encodeproject.org/files/ENCFF597VSW/@@download/ENCFF597VSW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF132WHS bigBed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF592NPO 11000663 ENCODE Processing Pipeline dea3ab2daa63656e81c7d3f56ed85947 https://www.encodeproject.org/files/ENCFF132WHS/@@download/ENCFF132WHS.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF991FXD bigBed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF148ZVH 11012922 ENCODE Processing Pipeline e4d5a2fd214886eb42f7305fa7f87d9a https://www.encodeproject.org/files/ENCFF991FXD/@@download/ENCFF991FXD.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF338TVS bed narrowPeak conservative idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF132FHH, ENCFF148ZVH, ENCFF419RSJ, ENCFF571TBP 30373 ENCODE Processing Pipeline 429cf1d87655ba1216ba2e0053946133 https://www.encodeproject.org/files/ENCFF338TVS/@@download/ENCFF338TVS.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF859CGK bigWig fold change over control ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF629GPG, ENCFF978RGD 2270356134 ENCODE Processing Pipeline 8863e8b11889984edbff8fd997366106 https://www.encodeproject.org/files/ENCFF859CGK/@@download/ENCFF859CGK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF592NPO bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF629GPG 6696785 ENCODE Processing Pipeline 3bf7c82e47bfdb9fc4aa567f3b6321da https://www.encodeproject.org/files/ENCFF592NPO/@@download/ENCFF592NPO.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF475NBH bigBed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF597VSW 11037005 ENCODE Processing Pipeline 7a37040ff73bbc7bc59b6e5c0a2bc580 https://www.encodeproject.org/files/ENCFF475NBH/@@download/ENCFF475NBH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF267BXB bed narrowPeak optimal idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF592NPO, ENCFF597VSW, ENCFF840YXG 48891 ENCODE Processing Pipeline c4c5305fbefb69645113f28b301b21ce https://www.encodeproject.org/files/ENCFF267BXB/@@download/ENCFF267BXB.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF009BTI bigBed narrowPeak optimal idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF267BXB 125830 ENCODE Processing Pipeline 4c8b689d635f104f53e68d9fcbb36be3 https://www.encodeproject.org/files/ENCFF009BTI/@@download/ENCFF009BTI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF398CTM bigWig fold change over control ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF978RGD 1684345698 ENCODE Processing Pipeline 485899fa1f69253e657651903241951f https://www.encodeproject.org/files/ENCFF398CTM/@@download/ENCFF398CTM.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF553VUH bigBed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF840YXG 10890574 ENCODE Processing Pipeline 4ca3a8bcb2e38b01dabf6766732fd670 https://www.encodeproject.org/files/ENCFF553VUH/@@download/ENCFF553VUH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF016QAD bigBed narrowPeak conservative idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF616JSV 97931 ENCODE Processing Pipeline bdf8af315ccbe8a1801af43e8d0e05f9 https://www.encodeproject.org/files/ENCFF016QAD/@@download/ENCFF016QAD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF616JSV bed narrowPeak conservative idr thresholded peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF592NPO, ENCFF597VSW, ENCFF840YXG 29029 ENCODE Processing Pipeline 12f390cff501e709e8892dfbee2b8ed0 https://www.encodeproject.org/files/ENCFF616JSV/@@download/ENCFF616JSV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF840YXG bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF629GPG, ENCFF978RGD 7290969 ENCODE Processing Pipeline a91cbd68e9812866a13bcfb4d0f66982 https://www.encodeproject.org/files/ENCFF840YXG/@@download/ENCFF840YXG.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF000ZDD bam alignments ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZDH 407128294 Sherman Weissman, Yale f75a8e54e5900eddf3668e39692b5e4c https://www.encodeproject.org/files/ENCFF000ZDD/@@download/ENCFF000ZDD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZDE bam alignments ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZDI 371741688 Sherman Weissman, Yale df7ba9aa03c568e194c95d036fbc0db1 https://www.encodeproject.org/files/ENCFF000ZDE/@@download/ENCFF000ZDE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZDF bigBed narrowPeak peaks ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPI 28060 Sherman Weissman, Yale 453c7240d13b01353aa7c0e4464f282f https://www.encodeproject.org/files/ENCFF000ZDF/@@download/ENCFF000ZDF.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZDG bigWig signal ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 335017899 Sherman Weissman, Yale 0a611e268dcacebe512fef00439427ca https://www.encodeproject.org/files/ENCFF000ZDG/@@download/ENCFF000ZDG.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000ZDH fastq reads ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 325668510 Sherman Weissman, Yale e35d1233fed41f798997450d218676f0 https://www.encodeproject.org/files/ENCFF000ZDH/@@download/ENCFF000ZDH.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000ZDI fastq reads ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 297870967 Sherman Weissman, Yale 72bfc652501dee2b1131a022449cd285 https://www.encodeproject.org/files/ENCFF000ZDI/@@download/ENCFF000ZDI.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VPI bed narrowPeak peaks ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 536 Sherman Weissman, Yale 53b582d7e33cebdad006cc70b1648caf https://www.encodeproject.org/files/ENCFF001VPI/@@download/ENCFF001VPI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF781PQI bam unfiltered alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF247XZL, ENCFF444TNL, ENCFF807MUK 6585876002 ENCODE Processing Pipeline bd60a29282c20b9a10a4830abae8d5a5 https://www.encodeproject.org/files/ENCFF781PQI/@@download/ENCFF781PQI.bam hg19 released ENCFF590RPF bam unfiltered alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF387THV, ENCFF807MUK, ENCFF975TEJ 5873432430 ENCODE Processing Pipeline d8359af543d39d25901097f7a55e7b42 https://www.encodeproject.org/files/ENCFF590RPF/@@download/ENCFF590RPF.bam hg19 released ENCFF444TNL fastq reads ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF247XZL 3033680327 Michael Snyder, Stanford aed60223c886634ae3220c4fa8572e1e SRA:SRR5112231 https://www.encodeproject.org/files/ENCFF444TNL/@@download/ENCFF444TNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF387THV fastq reads ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF975TEJ 2659123041 Michael Snyder, Stanford dd645cfccdd4a7e0034446593d9b904d SRA:SRR5112230 https://www.encodeproject.org/files/ENCFF387THV/@@download/ENCFF387THV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF247XZL fastq reads ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF444TNL 3123155598 Michael Snyder, Stanford d67f0c9de54dc373bc7255786d84f408 SRA:SRR5112231 https://www.encodeproject.org/files/ENCFF247XZL/@@download/ENCFF247XZL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF975TEJ fastq reads ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF387THV 2735803648 Michael Snyder, Stanford 1f3c6f7436ac32dd454ad8bc3ae5089f SRA:SRR5112230 https://www.encodeproject.org/files/ENCFF975TEJ/@@download/ENCFF975TEJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF269EAD bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF387THV, ENCFF807MUK, ENCFF975TEJ 5142050630 ENCODE Processing Pipeline 3ec178816536393440f54a6085b1e958 https://www.encodeproject.org/files/ENCFF269EAD/@@download/ENCFF269EAD.bam hg19 released ENCFF641ACA bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF247XZL, ENCFF444TNL, ENCFF807MUK 5703611470 ENCODE Processing Pipeline f6cd48b41f9fd0f52240a4709f9c29b5 https://www.encodeproject.org/files/ENCFF641ACA/@@download/ENCFF641ACA.bam hg19 released ENCFF719UDS bigWig signal p-value ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF641ACA 1284651562 ENCODE Processing Pipeline 7a419a9934f318e1aa58037af70792b0 https://www.encodeproject.org/files/ENCFF719UDS/@@download/ENCFF719UDS.bigWig hg19 released ENCFF040TQL bigWig signal p-value ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF269EAD 1295915352 ENCODE Processing Pipeline 80ef31a2d4914a906dda88f37d20f9da https://www.encodeproject.org/files/ENCFF040TQL/@@download/ENCFF040TQL.bigWig hg19 released ENCFF361JWO bigWig signal p-value ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF269EAD, ENCFF581ZJL, ENCFF641ACA 2060761055 ENCODE Processing Pipeline dbed8db157fa024909feb08f8cdf7f9a https://www.encodeproject.org/files/ENCFF361JWO/@@download/ENCFF361JWO.bigWig hg19 released ENCFF988BJZ bigWig fold change over control ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF641ACA 1433427105 ENCODE Processing Pipeline e1f05f91b9477058d7e35ae37e4bcbee https://www.encodeproject.org/files/ENCFF988BJZ/@@download/ENCFF988BJZ.bigWig hg19 released ENCFF617BQG bigWig fold change over control ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF269EAD 1338205301 ENCODE Processing Pipeline 880b6dfd4cdee903fbd8088c7392a212 https://www.encodeproject.org/files/ENCFF617BQG/@@download/ENCFF617BQG.bigWig hg19 released ENCFF847GKQ bigWig fold change over control ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF269EAD, ENCFF581ZJL, ENCFF641ACA 2379654715 ENCODE Processing Pipeline a723632ed91ac29b919f332664638b5b https://www.encodeproject.org/files/ENCFF847GKQ/@@download/ENCFF847GKQ.bigWig hg19 released ENCFF156CAB bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF641ACA 7197623 ENCODE Processing Pipeline 258dc50cffc52d10458538e5364f12b1 https://www.encodeproject.org/files/ENCFF156CAB/@@download/ENCFF156CAB.bed.gz hg19 released ENCFF547QMS bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF269EAD 7104313 ENCODE Processing Pipeline 4b45735c8984edb6cb159083cf179107 https://www.encodeproject.org/files/ENCFF547QMS/@@download/ENCFF547QMS.bed.gz hg19 released ENCFF305RMT bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF269EAD, ENCFF581ZJL, ENCFF641ACA 7247504 ENCODE Processing Pipeline 7f3fff033890b11d8b8451fd6ea3f9f7 https://www.encodeproject.org/files/ENCFF305RMT/@@download/ENCFF305RMT.bed.gz hg19 released ENCFF305JTM bigBed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF156CAB 12734981 ENCODE Processing Pipeline 0110378340e1612f49a34067dc1c858f https://www.encodeproject.org/files/ENCFF305JTM/@@download/ENCFF305JTM.bigBed hg19 released ENCFF023PDH bigBed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF547QMS 12921706 ENCODE Processing Pipeline ada1153e0df41def78b5bcefdef7570f https://www.encodeproject.org/files/ENCFF023PDH/@@download/ENCFF023PDH.bigBed hg19 released ENCFF786KEL bigBed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF305RMT 12667262 ENCODE Processing Pipeline d441865d875f825a26bcd941fcf53d8f https://www.encodeproject.org/files/ENCFF786KEL/@@download/ENCFF786KEL.bigBed hg19 released ENCFF995NIE bed narrowPeak optimal idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF156CAB, ENCFF305RMT, ENCFF547QMS 357758 ENCODE Processing Pipeline 19f29cf8d02b673dca79fcc242980eb8 https://www.encodeproject.org/files/ENCFF995NIE/@@download/ENCFF995NIE.bed.gz hg19 released ENCFF397TAH bigBed narrowPeak optimal idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF995NIE 684906 ENCODE Processing Pipeline f13f59df8b64c177ad4aa5e2860f1c0d https://www.encodeproject.org/files/ENCFF397TAH/@@download/ENCFF397TAH.bigBed hg19 released ENCFF989TYW bed narrowPeak conservative idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF156CAB, ENCFF305RMT, ENCFF547QMS 201341 ENCODE Processing Pipeline dd1ddf189fed03527b9c39a64942b70b https://www.encodeproject.org/files/ENCFF989TYW/@@download/ENCFF989TYW.bed.gz hg19 released ENCFF679NWH bigBed narrowPeak conservative idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF989TYW 442933 ENCODE Processing Pipeline 0439dca1071b1028e2fb2113fb305488 https://www.encodeproject.org/files/ENCFF679NWH/@@download/ENCFF679NWH.bigBed hg19 released ENCFF661WUX bam unfiltered alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF387THV, ENCFF643CGH, ENCFF975TEJ 5878842868 ENCODE Processing Pipeline 48f77f77350f295506e09080dfd4a797 https://www.encodeproject.org/files/ENCFF661WUX/@@download/ENCFF661WUX.bam GRCh38 released ENCFF687TMY bam unfiltered alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF247XZL, ENCFF444TNL, ENCFF643CGH 6591203705 ENCODE Processing Pipeline b950b5eb9de8ebd264a5db0d6136c985 https://www.encodeproject.org/files/ENCFF687TMY/@@download/ENCFF687TMY.bam GRCh38 released ENCFF122TGF bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF387THV, ENCFF643CGH, ENCFF975TEJ 5145634491 ENCODE Processing Pipeline 761644555843e7c46a1834cbe240fcb9 https://www.encodeproject.org/files/ENCFF122TGF/@@download/ENCFF122TGF.bam GRCh38 released ENCFF914TEL bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF247XZL, ENCFF444TNL, ENCFF643CGH 5707839605 ENCODE Processing Pipeline ecf62f841bc83027b2bb333d628be15d https://www.encodeproject.org/files/ENCFF914TEL/@@download/ENCFF914TEL.bam GRCh38 released ENCFF356ESC bigWig signal p-value ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF910IKB, ENCFF914TEL 1290542454 ENCODE Processing Pipeline e3931cec4740d9d5f84be7f4be51039f https://www.encodeproject.org/files/ENCFF356ESC/@@download/ENCFF356ESC.bigWig GRCh38 released ENCFF855CEC bigWig signal p-value ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF122TGF, ENCFF227IZS 1138976280 ENCODE Processing Pipeline a10bf3f224bf833089a28d6d9c12cc58 https://www.encodeproject.org/files/ENCFF855CEC/@@download/ENCFF855CEC.bigWig GRCh38 released ENCFF243YCJ bigWig signal p-value ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF122TGF, ENCFF227IZS, ENCFF910IKB, ENCFF914TEL 1852666741 ENCODE Processing Pipeline 0272830068b0d5e9c5629ba8835944c7 https://www.encodeproject.org/files/ENCFF243YCJ/@@download/ENCFF243YCJ.bigWig GRCh38 released ENCFF568YBK bigWig fold change over control ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF910IKB, ENCFF914TEL 1442669797 ENCODE Processing Pipeline 4b2719c89883faf0d3774b4f011bc83b https://www.encodeproject.org/files/ENCFF568YBK/@@download/ENCFF568YBK.bigWig GRCh38 released ENCFF337PHY bigWig fold change over control ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF122TGF, ENCFF227IZS 1340381938 ENCODE Processing Pipeline 95af0a4930e7b22038b8c81c77ee71f5 https://www.encodeproject.org/files/ENCFF337PHY/@@download/ENCFF337PHY.bigWig GRCh38 released ENCFF917GZE bigWig fold change over control ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF122TGF, ENCFF227IZS, ENCFF910IKB, ENCFF914TEL 2382052746 ENCODE Processing Pipeline 9368c8a8fcac3c28e795bcce503bd0e5 https://www.encodeproject.org/files/ENCFF917GZE/@@download/ENCFF917GZE.bigWig GRCh38 released ENCFF493PNH bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF910IKB, ENCFF914TEL 7177371 ENCODE Processing Pipeline ceada2171c29e43d6dded5463b60324b https://www.encodeproject.org/files/ENCFF493PNH/@@download/ENCFF493PNH.bed.gz GRCh38 released ENCFF168SEL bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF122TGF, ENCFF227IZS 7051302 ENCODE Processing Pipeline 791dc456bd30725d113834a0b887ef5f https://www.encodeproject.org/files/ENCFF168SEL/@@download/ENCFF168SEL.bed.gz GRCh38 released ENCFF601RBH bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF122TGF, ENCFF227IZS, ENCFF910IKB, ENCFF914TEL 7249354 ENCODE Processing Pipeline 3b06902021f768b7994f8161cdce7bc6 https://www.encodeproject.org/files/ENCFF601RBH/@@download/ENCFF601RBH.bed.gz GRCh38 released ENCFF787FGD bigBed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF493PNH 12742738 ENCODE Processing Pipeline 8bded22e20c2a94cdc949497faea42d8 https://www.encodeproject.org/files/ENCFF787FGD/@@download/ENCFF787FGD.bigBed GRCh38 released ENCFF890BDZ bigBed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF168SEL 12929368 ENCODE Processing Pipeline 50fc2980ed5a21a904750fc6af5ac0dc https://www.encodeproject.org/files/ENCFF890BDZ/@@download/ENCFF890BDZ.bigBed GRCh38 released ENCFF827JNR bigBed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF601RBH 12675830 ENCODE Processing Pipeline 275b8c5fbb31e14d79e38800dcda7e88 https://www.encodeproject.org/files/ENCFF827JNR/@@download/ENCFF827JNR.bigBed GRCh38 released ENCFF438DWU bed narrowPeak conservative idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF168SEL, ENCFF419RSJ, ENCFF493PNH, ENCFF601RBH 200296 ENCODE Processing Pipeline 12a1ab2c3e30f79bc7c2d1fb59dba39f https://www.encodeproject.org/files/ENCFF438DWU/@@download/ENCFF438DWU.bed.gz GRCh38 released ENCFF951HBR bigBed narrowPeak conservative idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF438DWU 443062 ENCODE Processing Pipeline 3ac20920ff15decb3ba17acc104cde2b https://www.encodeproject.org/files/ENCFF951HBR/@@download/ENCFF951HBR.bigBed GRCh38 released ENCFF481TNF bed narrowPeak optimal idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF168SEL, ENCFF419RSJ, ENCFF493PNH, ENCFF601RBH 355021 ENCODE Processing Pipeline e342a3d251dfd1eb825e08c2f533a212 https://www.encodeproject.org/files/ENCFF481TNF/@@download/ENCFF481TNF.bed.gz GRCh38 released ENCFF344JHK bigBed narrowPeak optimal idr thresholded peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF481TNF 683288 ENCODE Processing Pipeline 5be3dcba9219787f5937be4b1e355484 https://www.encodeproject.org/files/ENCFF344JHK/@@download/ENCFF344JHK.bigBed GRCh38 released ENCFF032RPG fastq reads ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF858ZHX 1483262097 Richard Myers, HAIB 65f535238dd69c6e21095e30371b4a0f SRA:SRR6212677 https://www.encodeproject.org/files/ENCFF032RPG/@@download/ENCFF032RPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF598GVT/ released low read depth, antibody characterized with exemption missing control alignments ENCFF858ZHX fastq reads ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF032RPG 1612396776 Richard Myers, HAIB e86978f66a44d22bede0b25cc2c9f800 SRA:SRR6212677 https://www.encodeproject.org/files/ENCFF858ZHX/@@download/ENCFF858ZHX.fastq.gz Illumina HiSeq 2000 /files/ENCFF549JAY/ released low read depth, antibody characterized with exemption missing control alignments ENCFF798MAY bam unfiltered alignments ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF032RPG, ENCFF807MUK, ENCFF858ZHX 3905958252 ENCODE Processing Pipeline 3b81cd6898c62b39750ba1f29bf799dc https://www.encodeproject.org/files/ENCFF798MAY/@@download/ENCFF798MAY.bam hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF570ZQD bam alignments ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF032RPG, ENCFF807MUK, ENCFF858ZHX 1652817652 ENCODE Processing Pipeline d344ca8ffd1a94849932288d5e4ce927 https://www.encodeproject.org/files/ENCFF570ZQD/@@download/ENCFF570ZQD.bam hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF132KSK bam alignments ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF032RPG, ENCFF643CGH, ENCFF858ZHX 1651549827 ENCODE Processing Pipeline 27f4e73a46a13118be5f08794eb12121 https://www.encodeproject.org/files/ENCFF132KSK/@@download/ENCFF132KSK.bam GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF634EAR bam unfiltered alignments ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF032RPG, ENCFF643CGH, ENCFF858ZHX 3930072427 ENCODE Processing Pipeline 1cfc965f9a50ffd85dc771c23d81246d https://www.encodeproject.org/files/ENCFF634EAR/@@download/ENCFF634EAR.bam GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF118EUF bigWig signal p-value ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF132KSK 1050352313 ENCODE Processing Pipeline 70c78efdb56fde2f61fc259d3706bf1d https://www.encodeproject.org/files/ENCFF118EUF/@@download/ENCFF118EUF.bigWig GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF984WNZ bigWig fold change over control ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF132KSK 777082049 ENCODE Processing Pipeline e5cde36d50bd5c18f92acc4bcf11cd2e https://www.encodeproject.org/files/ENCFF984WNZ/@@download/ENCFF984WNZ.bigWig GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF520ZFS bed narrowPeak peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF132KSK 5068554 ENCODE Processing Pipeline 15b4f44891e7057f04fe8a9e58e737e8 https://www.encodeproject.org/files/ENCFF520ZFS/@@download/ENCFF520ZFS.bed.gz GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF138WFS bigBed narrowPeak peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF520ZFS 11487816 ENCODE Processing Pipeline f99728575ef4d59adc8f647934f4f0d1 https://www.encodeproject.org/files/ENCFF138WFS/@@download/ENCFF138WFS.bigBed GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF261OWX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF520ZFS 705 ENCODE Processing Pipeline 9f9830e9818a9b7faf761d17deee9bee https://www.encodeproject.org/files/ENCFF261OWX/@@download/ENCFF261OWX.bed.gz GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF521GSS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF261OWX 42160 ENCODE Processing Pipeline 82e7d4ad56ef53d6cd7952f9b70adb20 https://www.encodeproject.org/files/ENCFF521GSS/@@download/ENCFF521GSS.bigBed GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF301QGR bigWig signal p-value ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF570ZQD 1229292995 ENCODE Processing Pipeline 12496f4baf05efd4a382a4c96b7f5182 https://www.encodeproject.org/files/ENCFF301QGR/@@download/ENCFF301QGR.bigWig hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF427FUX bigWig fold change over control ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF570ZQD 773926468 ENCODE Processing Pipeline cad941aad4c98350f022c73b33d8d9d5 https://www.encodeproject.org/files/ENCFF427FUX/@@download/ENCFF427FUX.bigWig hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF198PGO bigBed narrowPeak peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF023UTX 11469055 ENCODE Processing Pipeline 1357bd6f228f27a2e80867c54c44c8cb https://www.encodeproject.org/files/ENCFF198PGO/@@download/ENCFF198PGO.bigBed hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF219GKZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF469TTI 43756 ENCODE Processing Pipeline 8d5a07123d048ced1cb9cc6a63af21b9 https://www.encodeproject.org/files/ENCFF219GKZ/@@download/ENCFF219GKZ.bigBed hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF469TTI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF023UTX 1196 ENCODE Processing Pipeline 9701e254abddac8b2fee75c5c78334b9 https://www.encodeproject.org/files/ENCFF469TTI/@@download/ENCFF469TTI.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF023UTX bed narrowPeak peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF570ZQD 5068042 ENCODE Processing Pipeline fea0552bff9a87aeebd12782368572a8 https://www.encodeproject.org/files/ENCFF023UTX/@@download/ENCFF023UTX.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF221NRW fastq reads ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 1 100 paired-ended 1 ENCFF916HDR 2768163932 Michael Snyder, Stanford 24e5f28879d592af3c365d66b0589bd1 SRA:SRR6213724 https://www.encodeproject.org/files/ENCFF221NRW/@@download/ENCFF221NRW.fastq.gz Illumina HiSeq 4000 /files/ENCFF768QDH/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF916HDR fastq reads ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 1 100 paired-ended 2 ENCFF221NRW 3435343348 Michael Snyder, Stanford 4e9e39c1761d4714716f2d576c6bff8f SRA:SRR6213724 https://www.encodeproject.org/files/ENCFF916HDR/@@download/ENCFF916HDR.fastq.gz Illumina HiSeq 4000 /files/ENCFF408QFY/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF885KNH bam unfiltered alignments ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF221NRW, ENCFF643CGH, ENCFF916HDR 5485024125 ENCODE Processing Pipeline b57b4bb2d029d549ddbf56a9e670b792 https://www.encodeproject.org/files/ENCFF885KNH/@@download/ENCFF885KNH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF451ZUZ bam unfiltered alignments ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF221NRW, ENCFF807MUK, ENCFF916HDR 5486642183 ENCODE Processing Pipeline 47f07ed5104e5b4761938a71029144b9 https://www.encodeproject.org/files/ENCFF451ZUZ/@@download/ENCFF451ZUZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF529KBB bam alignments ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF221NRW, ENCFF643CGH, ENCFF916HDR 2981278863 ENCODE Processing Pipeline eddfa78cf91f6e433872f18f3402ab0e https://www.encodeproject.org/files/ENCFF529KBB/@@download/ENCFF529KBB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF365JBZ bam alignments ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF221NRW, ENCFF807MUK, ENCFF916HDR 2977391961 ENCODE Processing Pipeline 46e3d8357b7f768787c8a46711713329 https://www.encodeproject.org/files/ENCFF365JBZ/@@download/ENCFF365JBZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF472CPO bigWig signal p-value ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF365JBZ, ENCFF390SST 894967073 ENCODE Processing Pipeline d3f34ffa7a67b151026dbcaa9c1fcf00 https://www.encodeproject.org/files/ENCFF472CPO/@@download/ENCFF472CPO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF704TBE bed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF365JBZ, ENCFF390SST 6296385 ENCODE Processing Pipeline 83f933092541f32cefad10061ea61bad https://www.encodeproject.org/files/ENCFF704TBE/@@download/ENCFF704TBE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF772MTJ bigBed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF704TBE 13701510 ENCODE Processing Pipeline f2f61d177d34a7cb714c938c1122a840 https://www.encodeproject.org/files/ENCFF772MTJ/@@download/ENCFF772MTJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF796EDX bigWig fold change over control ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF365JBZ, ENCFF390SST 1023237899 ENCODE Processing Pipeline d225b5c801272ac945b799d47ddc5656 https://www.encodeproject.org/files/ENCFF796EDX/@@download/ENCFF796EDX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF782GCQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF001TDO, ENCFF704TBE 525859 ENCODE Processing Pipeline 15b704945383ee7abba81084b173550d https://www.encodeproject.org/files/ENCFF782GCQ/@@download/ENCFF782GCQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF323WRB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF782GCQ 959508 ENCODE Processing Pipeline 7a3c404dcfadc09e9ed75658902ca60f https://www.encodeproject.org/files/ENCFF323WRB/@@download/ENCFF323WRB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF378EET bigWig signal p-value ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF189PXK, ENCFF529KBB 1098629433 ENCODE Processing Pipeline 24958f4fce87b421893990f50397e189 https://www.encodeproject.org/files/ENCFF378EET/@@download/ENCFF378EET.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF054RKY bigBed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF804QQN 13775315 ENCODE Processing Pipeline 2a9f6db37c175cfbc019984b21d9345f https://www.encodeproject.org/files/ENCFF054RKY/@@download/ENCFF054RKY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF338TGS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF419RSJ, ENCFF804QQN 551414 ENCODE Processing Pipeline 24ed4ced5266db6d5cb741d73385c28d https://www.encodeproject.org/files/ENCFF338TGS/@@download/ENCFF338TGS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF270ZPN bigWig fold change over control ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF189PXK, ENCFF529KBB 1017832676 ENCODE Processing Pipeline 2b3af4680627aaaf88198f37bc1b9128 https://www.encodeproject.org/files/ENCFF270ZPN/@@download/ENCFF270ZPN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF150QYC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF338TGS 997107 ENCODE Processing Pipeline e219746c7447337528214578cd3a776b https://www.encodeproject.org/files/ENCFF150QYC/@@download/ENCFF150QYC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF804QQN bed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF189PXK, ENCFF529KBB 6348187 ENCODE Processing Pipeline 79eae8b0c6c43ab83356d2f99ecedfa0 https://www.encodeproject.org/files/ENCFF804QQN/@@download/ENCFF804QQN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF484TAP fastq reads ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF251TJX 4569138606 Michael Snyder, Stanford b0ec5bbf8e5bc6b93fc4a4f3f4877124 SRA:SRR5112190 https://www.encodeproject.org/files/ENCFF484TAP/@@download/ENCFF484TAP.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF251TJX fastq reads ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF484TAP 4830912444 Michael Snyder, Stanford f36141250a4024be345e5a09c88a52a1 SRA:SRR5112190 https://www.encodeproject.org/files/ENCFF251TJX/@@download/ENCFF251TJX.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF501VTR fastq reads ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF025VPM 2207236986 Michael Snyder, Stanford afcb03df761fdd21141263891ac1f592 https://www.encodeproject.org/files/ENCFF501VTR/@@download/ENCFF501VTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF025VPM fastq reads ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF501VTR 2177748356 Michael Snyder, Stanford b10148c1cb08e7a2c5db7d291d04fabc https://www.encodeproject.org/files/ENCFF025VPM/@@download/ENCFF025VPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF814WTW fastq reads ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF975CDD 4035002209 Michael Snyder, Stanford 3cf9c0f2b6b9108b720cef894124b834 SRA:SRR5112189 https://www.encodeproject.org/files/ENCFF814WTW/@@download/ENCFF814WTW.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF975CDD fastq reads ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF814WTW 4661242833 Michael Snyder, Stanford 5ee6300243bd42aa5c5994dfd9819c86 SRA:SRR5112189 https://www.encodeproject.org/files/ENCFF975CDD/@@download/ENCFF975CDD.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF561FQQ bam unfiltered alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF251TJX, ENCFF484TAP, ENCFF643CGH 8656724242 ENCODE Processing Pipeline 48203f8d0baae7ff8abcb2e54be4bb6a https://www.encodeproject.org/files/ENCFF561FQQ/@@download/ENCFF561FQQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF433NZX bam unfiltered alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 100 ENCFF807MUK, ENCFF814WTW, ENCFF975CDD 8169597670 ENCODE Processing Pipeline 7bbe232b76791cfca843ac753c3401c6 https://www.encodeproject.org/files/ENCFF433NZX/@@download/ENCFF433NZX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF521ZUC bam unfiltered alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 100 ENCFF643CGH, ENCFF814WTW, ENCFF975CDD 8177889549 ENCODE Processing Pipeline f093d1fce844dc79716464a2abbdb5ac https://www.encodeproject.org/files/ENCFF521ZUC/@@download/ENCFF521ZUC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF404KGA bam unfiltered alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF251TJX, ENCFF484TAP, ENCFF807MUK 8648450796 ENCODE Processing Pipeline a78d490ce3aeedd1202ba2d5bb6e0b9c https://www.encodeproject.org/files/ENCFF404KGA/@@download/ENCFF404KGA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF713FNS bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 100 ENCFF807MUK, ENCFF814WTW, ENCFF975CDD 6351554405 ENCODE Processing Pipeline 5c8058cb4ea2ee6ac4f3f2e0b286814e https://www.encodeproject.org/files/ENCFF713FNS/@@download/ENCFF713FNS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF406TJQ bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF251TJX, ENCFF484TAP, ENCFF643CGH 6407032095 ENCODE Processing Pipeline 18a0c9d6a47a554c9772b70dc05bc07b https://www.encodeproject.org/files/ENCFF406TJQ/@@download/ENCFF406TJQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF446HGS bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 100 ENCFF643CGH, ENCFF814WTW, ENCFF975CDD 6356564725 ENCODE Processing Pipeline 2168631538bd99fb02c79dc3a9a1b398 https://www.encodeproject.org/files/ENCFF446HGS/@@download/ENCFF446HGS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF894UKH bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF251TJX, ENCFF484TAP, ENCFF807MUK 6401331353 ENCODE Processing Pipeline 7a624c6709a7ee1dda6d24869a73333d https://www.encodeproject.org/files/ENCFF894UKH/@@download/ENCFF894UKH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF052AWK bigWig signal p-value ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF406TJQ, ENCFF446HGS, ENCFF712WXB, ENCFF790TAN 2432799787 ENCODE Processing Pipeline 573c965b3440429f182a325d32e790bd https://www.encodeproject.org/files/ENCFF052AWK/@@download/ENCFF052AWK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF144ACC bigWig signal p-value ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF406TJQ, ENCFF712WXB 1549601579 ENCODE Processing Pipeline 24d1bdd4a3678bb02e49e40944f9ec30 https://www.encodeproject.org/files/ENCFF144ACC/@@download/ENCFF144ACC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF060BJL bigWig signal p-value ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF446HGS, ENCFF712WXB, ENCFF790TAN 1897750510 ENCODE Processing Pipeline 2fee5b732f3bdbfb136bee34579412f8 https://www.encodeproject.org/files/ENCFF060BJL/@@download/ENCFF060BJL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF050PKA bigWig fold change over control ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF446HGS, ENCFF712WXB, ENCFF790TAN 2143124215 ENCODE Processing Pipeline 411081af103bdd0a93d7a37da5586feb https://www.encodeproject.org/files/ENCFF050PKA/@@download/ENCFF050PKA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF259TSP bigWig fold change over control ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF406TJQ, ENCFF712WXB 1886507932 ENCODE Processing Pipeline cde9c6f31e06451f7fd56272b359c1bc https://www.encodeproject.org/files/ENCFF259TSP/@@download/ENCFF259TSP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF690NQB bigWig fold change over control ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF406TJQ, ENCFF446HGS, ENCFF712WXB, ENCFF790TAN 4052436949 ENCODE Processing Pipeline 52ff80da5ccd59050cd779353239b277 https://www.encodeproject.org/files/ENCFF690NQB/@@download/ENCFF690NQB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF872ZMD bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF446HGS, ENCFF712WXB, ENCFF790TAN 7161215 ENCODE Processing Pipeline 0e9e09fc2fe699e1c31bf0dd3a4a2c8e https://www.encodeproject.org/files/ENCFF872ZMD/@@download/ENCFF872ZMD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF699TRY bigBed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF407JUL 12809928 ENCODE Processing Pipeline 751f6fdb67da5657d9af131da07602f8 https://www.encodeproject.org/files/ENCFF699TRY/@@download/ENCFF699TRY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF012TVZ bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF406TJQ, ENCFF712WXB 7200828 ENCODE Processing Pipeline cbecef0e703aa5497d0e507973135a09 https://www.encodeproject.org/files/ENCFF012TVZ/@@download/ENCFF012TVZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF813LHF bigBed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF012TVZ 12895744 ENCODE Processing Pipeline eec829bf5d843477228bd94a6653baa8 https://www.encodeproject.org/files/ENCFF813LHF/@@download/ENCFF813LHF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF407JUL bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF406TJQ, ENCFF446HGS, ENCFF712WXB, ENCFF790TAN 7248526 ENCODE Processing Pipeline 1b0316c1c1940b47ce742b0b79ad169e https://www.encodeproject.org/files/ENCFF407JUL/@@download/ENCFF407JUL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF885QWA bigBed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF872ZMD 12970640 ENCODE Processing Pipeline 5ece04d4ae8d8da6396258374ab2f069 https://www.encodeproject.org/files/ENCFF885QWA/@@download/ENCFF885QWA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF641WUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF302XKF 172997 ENCODE Processing Pipeline 849a4f8f2960340542a90a5a69616aba https://www.encodeproject.org/files/ENCFF641WUZ/@@download/ENCFF641WUZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF302XKF bed narrowPeak conservative idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF012TVZ, ENCFF407JUL, ENCFF419RSJ, ENCFF872ZMD 50610 ENCODE Processing Pipeline 14be49dfdf070fa86b17f0863c49db08 https://www.encodeproject.org/files/ENCFF302XKF/@@download/ENCFF302XKF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF354UUL bed narrowPeak optimal idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF012TVZ, ENCFF407JUL, ENCFF419RSJ, ENCFF872ZMD 88032 ENCODE Processing Pipeline a01682d2085868345e98e93637c59466 https://www.encodeproject.org/files/ENCFF354UUL/@@download/ENCFF354UUL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF381QUN bigBed narrowPeak optimal idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF354UUL 243021 ENCODE Processing Pipeline b667d14616e5c1e0030aa6632d2556d6 https://www.encodeproject.org/files/ENCFF381QUN/@@download/ENCFF381QUN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF833COZ bigWig signal p-value ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP 1730886291 ENCODE Processing Pipeline b3b746734aa2a7e3b876922155151795 https://www.encodeproject.org/files/ENCFF833COZ/@@download/ENCFF833COZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF123SYK bigWig signal p-value ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF834TUP, ENCFF894UKH 1533953797 ENCODE Processing Pipeline 32411ae86eca5e65c282097e415d36fe https://www.encodeproject.org/files/ENCFF123SYK/@@download/ENCFF123SYK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF749TKH bigWig signal p-value ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP, ENCFF894UKH 2429364856 ENCODE Processing Pipeline 54eafc02ca187754f61effcaa6cd5574 https://www.encodeproject.org/files/ENCFF749TKH/@@download/ENCFF749TKH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF496YQH bigWig fold change over control ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP 2170062342 ENCODE Processing Pipeline e135bda7596295b24b49403450074dc7 https://www.encodeproject.org/files/ENCFF496YQH/@@download/ENCFF496YQH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF180WWM bigWig fold change over control ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF834TUP, ENCFF894UKH 1865545483 ENCODE Processing Pipeline f9cc87adf698a011ed0f0c16cafdda04 https://www.encodeproject.org/files/ENCFF180WWM/@@download/ENCFF180WWM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF341OHT bigWig fold change over control ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP, ENCFF894UKH 4045799394 ENCODE Processing Pipeline 69d9b568f4615ffea46752515a28e8f0 https://www.encodeproject.org/files/ENCFF341OHT/@@download/ENCFF341OHT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF119HTJ bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP 7158688 ENCODE Processing Pipeline 75295dfe55f5bd4bfd290e17652e20fa https://www.encodeproject.org/files/ENCFF119HTJ/@@download/ENCFF119HTJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF100TAA bigBed narrowPeak conservative idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF610KUB 171035 ENCODE Processing Pipeline 815e709a6ca00b6a3d3a49cbd87a90ca https://www.encodeproject.org/files/ENCFF100TAA/@@download/ENCFF100TAA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF613QHY bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP, ENCFF894UKH 7243838 ENCODE Processing Pipeline 16ac8d3b1027ce9f4715e9cb34efd8ad https://www.encodeproject.org/files/ENCFF613QHY/@@download/ENCFF613QHY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF627PRV bigBed narrowPeak optimal idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF294VWT 252944 ENCODE Processing Pipeline e8d157d3e4f1cdda089a9df3a5f183c9 https://www.encodeproject.org/files/ENCFF627PRV/@@download/ENCFF627PRV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF196BYO bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF834TUP, ENCFF894UKH 7190905 ENCODE Processing Pipeline 384d7721ceedfc6c87bc7fdbba81a592 https://www.encodeproject.org/files/ENCFF196BYO/@@download/ENCFF196BYO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF610KUB bed narrowPeak conservative idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF119HTJ, ENCFF196BYO, ENCFF613QHY 50532 ENCODE Processing Pipeline 4ee902c1263a19cf31eca4ff4a23e403 https://www.encodeproject.org/files/ENCFF610KUB/@@download/ENCFF610KUB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF294VWT bed narrowPeak optimal idr thresholded peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF119HTJ, ENCFF196BYO, ENCFF613QHY 95376 ENCODE Processing Pipeline a6f8dcd67064d010c2255be4e069cee1 https://www.encodeproject.org/files/ENCFF294VWT/@@download/ENCFF294VWT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF334PFL bigBed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF119HTJ 12959061 ENCODE Processing Pipeline 7670797cf2189a0d25b504816e22a5af https://www.encodeproject.org/files/ENCFF334PFL/@@download/ENCFF334PFL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF405SHW bigBed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF196BYO 12897773 ENCODE Processing Pipeline 361c59f5fce018e7c33addb3592c59a7 https://www.encodeproject.org/files/ENCFF405SHW/@@download/ENCFF405SHW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF797MQN bigBed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF613QHY 12802589 ENCODE Processing Pipeline a0b505df85b73980fc759a7d0ebc711c https://www.encodeproject.org/files/ENCFF797MQN/@@download/ENCFF797MQN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF964LGL fastq reads ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF074EGX 3408911610 Michael Snyder, Stanford 39c47ed3188e46d1fb96cc773ee5f274 SRA:SRR6212902 https://www.encodeproject.org/files/ENCFF964LGL/@@download/ENCFF964LGL.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, moderate library complexity ENCFF074EGX fastq reads ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF964LGL 3860016671 Michael Snyder, Stanford dd6c2ddfe5598366451feb9d770e6427 SRA:SRR6212902 https://www.encodeproject.org/files/ENCFF074EGX/@@download/ENCFF074EGX.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, moderate library complexity ENCFF215HYE fastq reads ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF408WZK 2974887429 Michael Snyder, Stanford 8391c9d86fb4a03eec69ae95b663a31c SRA:SRR6212901 https://www.encodeproject.org/files/ENCFF215HYE/@@download/ENCFF215HYE.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, moderate library complexity ENCFF408WZK fastq reads ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF215HYE 3500229440 Michael Snyder, Stanford 79d3e63cc95f09c44af8a6a753d556d2 SRA:SRR6212901 https://www.encodeproject.org/files/ENCFF408WZK/@@download/ENCFF408WZK.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, moderate library complexity ENCFF058YUY bam unfiltered alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 100 ENCFF074EGX, ENCFF807MUK, ENCFF964LGL 6691367072 ENCODE Processing Pipeline 209fb92b3003496a8080ceb52d6534ed https://www.encodeproject.org/files/ENCFF058YUY/@@download/ENCFF058YUY.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF603BNH bam unfiltered alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 100 ENCFF215HYE, ENCFF408WZK, ENCFF807MUK 5988096559 ENCODE Processing Pipeline 3352f5abea96cb8db2b8e7532330235a https://www.encodeproject.org/files/ENCFF603BNH/@@download/ENCFF603BNH.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF530PHJ bam unfiltered alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 100 ENCFF215HYE, ENCFF408WZK, ENCFF643CGH 5995524640 ENCODE Processing Pipeline ff648cff96c7d26b547f606887ce5c86 https://www.encodeproject.org/files/ENCFF530PHJ/@@download/ENCFF530PHJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF932TXI bam unfiltered alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 100 ENCFF074EGX, ENCFF643CGH, ENCFF964LGL 6702518552 ENCODE Processing Pipeline 0185c1bd7f81d223120e97b5a411d481 https://www.encodeproject.org/files/ENCFF932TXI/@@download/ENCFF932TXI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF657QCE bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 100 ENCFF215HYE, ENCFF408WZK, ENCFF807MUK 3947906806 ENCODE Processing Pipeline 49488fcbe80cd8c26e581fba33da2395 https://www.encodeproject.org/files/ENCFF657QCE/@@download/ENCFF657QCE.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF111YNK bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 100 ENCFF074EGX, ENCFF807MUK, ENCFF964LGL 5055250856 ENCODE Processing Pipeline 8632c593222fdb04e9267e2d14797b30 https://www.encodeproject.org/files/ENCFF111YNK/@@download/ENCFF111YNK.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF196PFK bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 100 ENCFF215HYE, ENCFF408WZK, ENCFF643CGH 3951727123 ENCODE Processing Pipeline f6c9ccb23b72d964329474ea2a5d3466 https://www.encodeproject.org/files/ENCFF196PFK/@@download/ENCFF196PFK.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF785DDR bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 100 ENCFF074EGX, ENCFF643CGH, ENCFF964LGL 5061711862 ENCODE Processing Pipeline f419dd9fd6dddd6ce7c4d7f3a03d0144 https://www.encodeproject.org/files/ENCFF785DDR/@@download/ENCFF785DDR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF981ETO bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF111YNK, ENCFF447KVS, ENCFF657QCE, ENCFF823USR 5212243 ENCODE Processing Pipeline d8f5eac1edd51f8700bc3b9e33fd0fd9 https://www.encodeproject.org/files/ENCFF981ETO/@@download/ENCFF981ETO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF471GWS bigBed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF814THZ 10920250 ENCODE Processing Pipeline a156d0b104d6229b8119196f939aee64 https://www.encodeproject.org/files/ENCFF471GWS/@@download/ENCFF471GWS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF732OPY bigWig fold change over control ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF111YNK, ENCFF447KVS, ENCFF823USR 1896822888 ENCODE Processing Pipeline 47a8470845886b819be7458ec1a06a2b https://www.encodeproject.org/files/ENCFF732OPY/@@download/ENCFF732OPY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF814THZ bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF111YNK, ENCFF447KVS, ENCFF823USR 6904856 ENCODE Processing Pipeline 88028f7095d6185b0d0cad14b6a8a77d https://www.encodeproject.org/files/ENCFF814THZ/@@download/ENCFF814THZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF121GKL bigBed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF325AWC 10562041 ENCODE Processing Pipeline 74e9f514af3f62483a10c3e16d997bd1 https://www.encodeproject.org/files/ENCFF121GKL/@@download/ENCFF121GKL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF713INP bigBed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF981ETO 8257873 ENCODE Processing Pipeline ec2bcaece1678df62f5e0003615eee8d https://www.encodeproject.org/files/ENCFF713INP/@@download/ENCFF713INP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF063TQC bigBed narrowPeak optimal idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF755DGT 90973 ENCODE Processing Pipeline 7c2f76f5f778ea99e79665a1061d3268 https://www.encodeproject.org/files/ENCFF063TQC/@@download/ENCFF063TQC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF602VWZ bigWig signal p-value ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF657QCE, ENCFF823USR 1708563188 ENCODE Processing Pipeline cbe07755ca96dfd9eb3a2d3115bb79b9 https://www.encodeproject.org/files/ENCFF602VWZ/@@download/ENCFF602VWZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF718TJL bigWig signal p-value ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF111YNK, ENCFF447KVS, ENCFF657QCE, ENCFF823USR 2231386798 ENCODE Processing Pipeline bde41dae52c14f6ecc03d39e64c3afbd https://www.encodeproject.org/files/ENCFF718TJL/@@download/ENCFF718TJL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF751ARY bigWig fold change over control ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF785DDR 1898967045 ENCODE Processing Pipeline fefab65f66ef74508fa45fb2d6306627 https://www.encodeproject.org/files/ENCFF751ARY/@@download/ENCFF751ARY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF033XFU bigWig fold change over control ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF657QCE, ENCFF823USR 1661477828 ENCODE Processing Pipeline 2d7122a1830022bf3a5bba135d1e15bd https://www.encodeproject.org/files/ENCFF033XFU/@@download/ENCFF033XFU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF163KRR bigWig fold change over control ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF111YNK, ENCFF447KVS, ENCFF657QCE, ENCFF823USR 2347615591 ENCODE Processing Pipeline f156513d01a13b7d51c84061f789f002 https://www.encodeproject.org/files/ENCFF163KRR/@@download/ENCFF163KRR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF962CWY bigBed narrowPeak conservative idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF598JSJ 77594 ENCODE Processing Pipeline bcc0347413ade8ab016c048b3a695960 https://www.encodeproject.org/files/ENCFF962CWY/@@download/ENCFF962CWY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF756AYK bigWig signal p-value ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF111YNK, ENCFF447KVS, ENCFF823USR 1777874191 ENCODE Processing Pipeline 373bb30aae1255a25a8a9e6709b01871 https://www.encodeproject.org/files/ENCFF756AYK/@@download/ENCFF756AYK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF325AWC bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF657QCE, ENCFF823USR 6304967 ENCODE Processing Pipeline 0c0361fef883013c7e69fcf89afd2d03 https://www.encodeproject.org/files/ENCFF325AWC/@@download/ENCFF325AWC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF598JSJ bed narrowPeak conservative idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF325AWC, ENCFF814THZ, ENCFF981ETO 10581 ENCODE Processing Pipeline 2921bdc2067095bb8d78eee29fc58342 https://www.encodeproject.org/files/ENCFF598JSJ/@@download/ENCFF598JSJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF755DGT bed narrowPeak optimal idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF325AWC, ENCFF814THZ, ENCFF981ETO 17086 ENCODE Processing Pipeline d2f562a95129f2be1a1adf6ada4ab117 https://www.encodeproject.org/files/ENCFF755DGT/@@download/ENCFF755DGT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF607AAI bigWig signal p-value ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF191XYH, ENCFF196PFK, ENCFF746SKT 1687612435 ENCODE Processing Pipeline 95841bf00209898fa8c4dee68e67df3c https://www.encodeproject.org/files/ENCFF607AAI/@@download/ENCFF607AAI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF104KJW bigWig signal p-value ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF785DDR 1433423114 ENCODE Processing Pipeline e70948169f922b7ea2c105ee3de5fc5b https://www.encodeproject.org/files/ENCFF104KJW/@@download/ENCFF104KJW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF546CBE bigWig signal p-value ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF191XYH, ENCFF196PFK, ENCFF746SKT, ENCFF785DDR 2232494361 ENCODE Processing Pipeline 41295caa8ceb7e8a334f8244e98f8e65 https://www.encodeproject.org/files/ENCFF546CBE/@@download/ENCFF546CBE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF192SUR bed narrowPeak conservative idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF228VWZ, ENCFF419RSJ, ENCFF564REQ, ENCFF921GEW 9557 ENCODE Processing Pipeline 631078aec2fddc7a39b919216ef45b5c https://www.encodeproject.org/files/ENCFF192SUR/@@download/ENCFF192SUR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF668KBO bigBed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF564REQ 10941508 ENCODE Processing Pipeline f825e1be69a74fe4ce175200051e39fa https://www.encodeproject.org/files/ENCFF668KBO/@@download/ENCFF668KBO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF485FXI bigBed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF921GEW 8260126 ENCODE Processing Pipeline 9484b735761f965c9ae211cabd3b9731 https://www.encodeproject.org/files/ENCFF485FXI/@@download/ENCFF485FXI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF146ZZL bigWig fold change over control ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF191XYH, ENCFF196PFK, ENCFF746SKT 1676950578 ENCODE Processing Pipeline 08f6ef2993a9b87cfdec3d987af6b5d9 https://www.encodeproject.org/files/ENCFF146ZZL/@@download/ENCFF146ZZL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF564REQ bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF785DDR 6910220 ENCODE Processing Pipeline d18320dd3fab70dd2aa9ab6b0a7719e8 https://www.encodeproject.org/files/ENCFF564REQ/@@download/ENCFF564REQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF679BGS bigBed narrowPeak conservative idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF192SUR 76737 ENCODE Processing Pipeline 3fe394da4d4521669afa58ab444497d5 https://www.encodeproject.org/files/ENCFF679BGS/@@download/ENCFF679BGS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF228VWZ bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF191XYH, ENCFF196PFK, ENCFF746SKT 6307943 ENCODE Processing Pipeline 3e1c7d80537d69c8130c76902b8c74d5 https://www.encodeproject.org/files/ENCFF228VWZ/@@download/ENCFF228VWZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF074PWK bigBed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF228VWZ 10586193 ENCODE Processing Pipeline 0de5170fd44ed580152f4d189b29e2a3 https://www.encodeproject.org/files/ENCFF074PWK/@@download/ENCFF074PWK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF421KUP bigWig fold change over control ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF191XYH, ENCFF196PFK, ENCFF746SKT, ENCFF785DDR 2358447049 ENCODE Processing Pipeline 7aec238de91009eb2bfd7907e445a022 https://www.encodeproject.org/files/ENCFF421KUP/@@download/ENCFF421KUP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF921GEW bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF191XYH, ENCFF196PFK, ENCFF746SKT, ENCFF785DDR 5221029 ENCODE Processing Pipeline b791b47f356ced10146f662cdaa9ead4 https://www.encodeproject.org/files/ENCFF921GEW/@@download/ENCFF921GEW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF682WFF bed narrowPeak optimal idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF228VWZ, ENCFF419RSJ, ENCFF564REQ, ENCFF921GEW 17616 ENCODE Processing Pipeline c97e66a1ee30af1c018ffbbd5abcd1e1 https://www.encodeproject.org/files/ENCFF682WFF/@@download/ENCFF682WFF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF968XAP bigBed narrowPeak optimal idr thresholded peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF682WFF 92916 ENCODE Processing Pipeline 979b5c860d849a6d871d973b1a30e621 https://www.encodeproject.org/files/ENCFF968XAP/@@download/ENCFF968XAP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF961WCQ fastq reads ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 single-ended 2063953232 Bradley Bernstein, Broad 75fe39290e71bff6878fabb36d4fb3e2 https://www.encodeproject.org/files/ENCFF961WCQ/@@download/ENCFF961WCQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF413RQG/ released borderline replicate concordance, inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF005ONO fastq reads ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 76 single-ended 2144204398 Bradley Bernstein, Broad 8fa24f4a7b1e1339c39613af249a7ed3 https://www.encodeproject.org/files/ENCFF005ONO/@@download/ENCFF005ONO.fastq.gz Illumina HiSeq 2500 /files/ENCFF048ZOQ/, /files/ENCFF796ERZ/, /files/ENCFF957PGR/ released borderline replicate concordance, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF811UVV bam unfiltered alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF005ONO, ENCFF643CGH 1674081910 ENCODE Processing Pipeline 3ab7576251e875744a2541f3ff4c410e https://www.encodeproject.org/files/ENCFF811UVV/@@download/ENCFF811UVV.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF775RWX bam unfiltered alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF807MUK, ENCFF961WCQ 1616769785 ENCODE Processing Pipeline 48d0dc704b365559f253341fdf12b49d https://www.encodeproject.org/files/ENCFF775RWX/@@download/ENCFF775RWX.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF166FGV bam unfiltered alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF005ONO, ENCFF807MUK 1662318112 ENCODE Processing Pipeline b0ff1f0958b45ff13c5cd5558eb3f435 https://www.encodeproject.org/files/ENCFF166FGV/@@download/ENCFF166FGV.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF870DWH bam unfiltered alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF643CGH, ENCFF961WCQ 1628226545 ENCODE Processing Pipeline 0637cd6656206a865821e9ad6ca30000 https://www.encodeproject.org/files/ENCFF870DWH/@@download/ENCFF870DWH.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF260GTK bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF005ONO, ENCFF643CGH 1087133919 ENCODE Processing Pipeline fc62cee406e7457c9d38482235918e55 https://www.encodeproject.org/files/ENCFF260GTK/@@download/ENCFF260GTK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF401DJS bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF807MUK, ENCFF961WCQ 1087728566 ENCODE Processing Pipeline 13590fd6a21e9141eef4ea743f12d538 https://www.encodeproject.org/files/ENCFF401DJS/@@download/ENCFF401DJS.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF933BWH bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF005ONO, ENCFF807MUK 1087331478 ENCODE Processing Pipeline b0ecb3da877639dccd463cd36af3a305 https://www.encodeproject.org/files/ENCFF933BWH/@@download/ENCFF933BWH.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF667AGZ bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF643CGH, ENCFF961WCQ 1087531017 ENCODE Processing Pipeline f8c04c5ef0fa808a199fab0c829de7f6 https://www.encodeproject.org/files/ENCFF667AGZ/@@download/ENCFF667AGZ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF268BIZ bigWig signal p-value ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF933BWH 1105006369 ENCODE Processing Pipeline c93c56c5c25aa23421777511897023af https://www.encodeproject.org/files/ENCFF268BIZ/@@download/ENCFF268BIZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF782WCL bigWig signal p-value ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF064LQH, ENCFF667AGZ, ENCFF889VIV 1099691984 ENCODE Processing Pipeline 2a2a4fc7ce3ce81b39a59bba3c319c7b https://www.encodeproject.org/files/ENCFF782WCL/@@download/ENCFF782WCL.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF333KDK bigWig signal p-value ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT 953795405 ENCODE Processing Pipeline bf4612fe0a92bce5876ce7f1b090e7e2 https://www.encodeproject.org/files/ENCFF333KDK/@@download/ENCFF333KDK.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF749LGU bigWig signal p-value ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF064LQH, ENCFF260GTK, ENCFF889VIV 1036664664 ENCODE Processing Pipeline 75505453eabeb867ed035a65122315e3 https://www.encodeproject.org/files/ENCFF749LGU/@@download/ENCFF749LGU.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF180JIO bigWig fold change over control ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT 1052919960 ENCODE Processing Pipeline 750ddc2f54b98beb430ec3f78594925a https://www.encodeproject.org/files/ENCFF180JIO/@@download/ENCFF180JIO.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF996LZN bigWig signal p-value ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF064LQH, ENCFF260GTK, ENCFF667AGZ, ENCFF889VIV 1438449820 ENCODE Processing Pipeline 107c9fb1ca9fed99042924dbcd9b9c22 https://www.encodeproject.org/files/ENCFF996LZN/@@download/ENCFF996LZN.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF790HAU bigWig signal p-value ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT, ENCFF933BWH 1232338735 ENCODE Processing Pipeline 68f84aeca73be7c3093229d412b87405 https://www.encodeproject.org/files/ENCFF790HAU/@@download/ENCFF790HAU.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF570TTM bigWig fold change over control ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF064LQH, ENCFF667AGZ, ENCFF889VIV 1049440854 ENCODE Processing Pipeline c4692e910cf71533498fe8eb33439fea https://www.encodeproject.org/files/ENCFF570TTM/@@download/ENCFF570TTM.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF897CCB bigWig fold change over control ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF933BWH 1056854298 ENCODE Processing Pipeline b2ca400dd60a101764506034f2c79225 https://www.encodeproject.org/files/ENCFF897CCB/@@download/ENCFF897CCB.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF221KJE bigWig fold change over control ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF064LQH, ENCFF260GTK, ENCFF889VIV 1066580167 ENCODE Processing Pipeline 1d468e190b36f9b9059f210dfac45e79 https://www.encodeproject.org/files/ENCFF221KJE/@@download/ENCFF221KJE.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF042IKR bigWig fold change over control ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT, ENCFF933BWH 1482641508 ENCODE Processing Pipeline a45059f3e3325caeb9526ad544155009 https://www.encodeproject.org/files/ENCFF042IKR/@@download/ENCFF042IKR.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF011JWE bigWig fold change over control ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF064LQH, ENCFF260GTK, ENCFF667AGZ, ENCFF889VIV 1472675894 ENCODE Processing Pipeline 823bb8ec27dc4ffbc894fd39ed50bc63 https://www.encodeproject.org/files/ENCFF011JWE/@@download/ENCFF011JWE.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF577LVA bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF064LQH, ENCFF667AGZ, ENCFF889VIV 6466751 ENCODE Processing Pipeline db064ddb2cb8b30e03dfe0d8a341f46d https://www.encodeproject.org/files/ENCFF577LVA/@@download/ENCFF577LVA.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF695ZBN bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF064LQH, ENCFF260GTK, ENCFF667AGZ, ENCFF889VIV 7057777 ENCODE Processing Pipeline 94cbceadda549d315753cd3420551bad https://www.encodeproject.org/files/ENCFF695ZBN/@@download/ENCFF695ZBN.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF050VHU bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF064LQH, ENCFF260GTK, ENCFF889VIV 6309803 ENCODE Processing Pipeline 9fbf9c0f1db646d27eb118082ae80eff https://www.encodeproject.org/files/ENCFF050VHU/@@download/ENCFF050VHU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF954ZXO bigBed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF577LVA 13354231 ENCODE Processing Pipeline d71a90d80da85647b2c5136283c31bfd https://www.encodeproject.org/files/ENCFF954ZXO/@@download/ENCFF954ZXO.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF325ZGB bed narrowPeak optimal idr thresholded peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF050VHU, ENCFF419RSJ, ENCFF577LVA, ENCFF695ZBN 8300 ENCODE Processing Pipeline 82e4d42cf4e15757634e6e62def779f8 https://www.encodeproject.org/files/ENCFF325ZGB/@@download/ENCFF325ZGB.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF692CDD bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF933BWH 6267140 ENCODE Processing Pipeline 41225965f4413d81312d7cca6e546e21 https://www.encodeproject.org/files/ENCFF692CDD/@@download/ENCFF692CDD.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF734XYJ bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT 6540954 ENCODE Processing Pipeline fdb2f244a6d617aa57f75313327cd2e9 https://www.encodeproject.org/files/ENCFF734XYJ/@@download/ENCFF734XYJ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF941MND bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT, ENCFF933BWH 7059413 ENCODE Processing Pipeline e2adfc1444a33516ed8a51b2740b6e77 https://www.encodeproject.org/files/ENCFF941MND/@@download/ENCFF941MND.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF966WLW bigBed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF734XYJ 13318920 ENCODE Processing Pipeline bddf6fa10634baed962cfa821b111c56 https://www.encodeproject.org/files/ENCFF966WLW/@@download/ENCFF966WLW.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF694UHH bigBed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF941MND 13190462 ENCODE Processing Pipeline a0ad506dde377e5a595c5b5bdcbffdcf https://www.encodeproject.org/files/ENCFF694UHH/@@download/ENCFF694UHH.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF543ADS bigBed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF050VHU 13465852 ENCODE Processing Pipeline aee44d47c7af3f40a30f1d9fc147bb39 https://www.encodeproject.org/files/ENCFF543ADS/@@download/ENCFF543ADS.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF446EGB bigBed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF695ZBN 13196713 ENCODE Processing Pipeline 0e5db34e2d3f564c6c5fd90dae7da2fd https://www.encodeproject.org/files/ENCFF446EGB/@@download/ENCFF446EGB.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF599FDI bigBed narrowPeak optimal idr thresholded peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF325ZGB 93623 ENCODE Processing Pipeline ea6cdb3963e40c7bc26f7cc53d592750 https://www.encodeproject.org/files/ENCFF599FDI/@@download/ENCFF599FDI.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF657WCY bigBed narrowPeak conservative idr thresholded peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF645LQG 91138 ENCODE Processing Pipeline c85f4b99f553ed377e0366eb3408eaea https://www.encodeproject.org/files/ENCFF657WCY/@@download/ENCFF657WCY.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF335AGE bigBed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF692CDD 13472925 ENCODE Processing Pipeline af6b2c5baeacdfc3cb4a675d3d687786 https://www.encodeproject.org/files/ENCFF335AGE/@@download/ENCFF335AGE.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF645LQG bed narrowPeak conservative idr thresholded peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF692CDD, ENCFF734XYJ, ENCFF941MND 7673 ENCODE Processing Pipeline d2ffeaad3dc878b7bd15771bb4d4e349 https://www.encodeproject.org/files/ENCFF645LQG/@@download/ENCFF645LQG.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF947SUP bed narrowPeak optimal idr thresholded peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF692CDD, ENCFF734XYJ, ENCFF941MND 9304 ENCODE Processing Pipeline 6f5ef776604ae4ef6e6428c16abcc69a https://www.encodeproject.org/files/ENCFF947SUP/@@download/ENCFF947SUP.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF757CEK bigBed narrowPeak optimal idr thresholded peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF947SUP 85832 ENCODE Processing Pipeline 8d641e97f5de01c18cb31e68c5b0fb56 https://www.encodeproject.org/files/ENCFF757CEK/@@download/ENCFF757CEK.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF017QRM fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF805JBH 2808257050 Michael Snyder, Stanford c87ed8b81c8e18e43e851d8eef02ca18 SRA:SRR6214376 https://www.encodeproject.org/files/ENCFF017QRM/@@download/ENCFF017QRM.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF805JBH fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF017QRM 3191734554 Michael Snyder, Stanford 8b163f7dd77a878045861d0c12739dd2 SRA:SRR6214376 https://www.encodeproject.org/files/ENCFF805JBH/@@download/ENCFF805JBH.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF194BDT fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF209IJT 2828404865 Michael Snyder, Stanford 18e78b74d8a8363b5a147ea5277d92a7 SRA:SRR6214377 https://www.encodeproject.org/files/ENCFF194BDT/@@download/ENCFF194BDT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF209IJT fastq reads ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF194BDT 3148028088 Michael Snyder, Stanford b4f36949c2b53309b7f35b86a4183c9e SRA:SRR6214377 https://www.encodeproject.org/files/ENCFF209IJT/@@download/ENCFF209IJT.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF678UMR bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF805JBH, ENCFF807MUK 5108333092 ENCODE Processing Pipeline 50781bb424fd64b15e41eb48c8ac041f https://www.encodeproject.org/files/ENCFF678UMR/@@download/ENCFF678UMR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF828AOH bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF807MUK 5136910777 ENCODE Processing Pipeline 3b4930820f509b07ee95cfdd954d0168 https://www.encodeproject.org/files/ENCFF828AOH/@@download/ENCFF828AOH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF812WOT bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF643CGH 5134694921 ENCODE Processing Pipeline de8dd9f91fd99d84b14121dd4d713b04 https://www.encodeproject.org/files/ENCFF812WOT/@@download/ENCFF812WOT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF236GOA bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF643CGH 3241851579 ENCODE Processing Pipeline af06966b5edc76baee5fdfeb4e239d15 https://www.encodeproject.org/files/ENCFF236GOA/@@download/ENCFF236GOA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF537UPI bam unfiltered alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF643CGH, ENCFF805JBH 5104507959 ENCODE Processing Pipeline 3583b14f55acabc7538b0a4123f16023 https://www.encodeproject.org/files/ENCFF537UPI/@@download/ENCFF537UPI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF949DKV bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF807MUK 3236452654 ENCODE Processing Pipeline 6a69b78ed811b81768f2f83ea7a66c38 https://www.encodeproject.org/files/ENCFF949DKV/@@download/ENCFF949DKV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF126ECH bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF805JBH, ENCFF807MUK 3154484103 ENCODE Processing Pipeline bb319356ff8aef50d0a6052aa48eec11 https://www.encodeproject.org/files/ENCFF126ECH/@@download/ENCFF126ECH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF785FLS bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF643CGH, ENCFF805JBH 3160883822 ENCODE Processing Pipeline 2d335a54a7838ff9c17951f74a2536a8 https://www.encodeproject.org/files/ENCFF785FLS/@@download/ENCFF785FLS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF901VNK bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 1128709286 ENCODE Processing Pipeline 1279ba3ac84ef675483b4c2e8f22532f https://www.encodeproject.org/files/ENCFF901VNK/@@download/ENCFF901VNK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF657GPM bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF666ATR, ENCFF785FLS 1062798220 ENCODE Processing Pipeline 7812d0cffca094681de6b099f7a75248 https://www.encodeproject.org/files/ENCFF657GPM/@@download/ENCFF657GPM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF165WVA bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF126ECH, ENCFF592WAL, ENCFF901CND, ENCFF949DKV 2160283143 ENCODE Processing Pipeline 866a07a95406941b5e12e16128c1249e https://www.encodeproject.org/files/ENCFF165WVA/@@download/ENCFF165WVA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF151RRG bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF236GOA, ENCFF322NTO, ENCFF666ATR, ENCFF785FLS 1986669405 ENCODE Processing Pipeline 05646f9c8a43cc173411b8a9fe9bee73 https://www.encodeproject.org/files/ENCFF151RRG/@@download/ENCFF151RRG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF862GCR bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF041WNR 11438886 ENCODE Processing Pipeline 5b1987e59e082bef7afccbece08a11ae https://www.encodeproject.org/files/ENCFF862GCR/@@download/ENCFF862GCR.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF578XEH bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 1186689800 ENCODE Processing Pipeline 324edd663f2467ac438870d7b0f9bc1d https://www.encodeproject.org/files/ENCFF578XEH/@@download/ENCFF578XEH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF119UKJ bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 5915378 ENCODE Processing Pipeline bcb85655ff06ed19a2fc2aa516084aaf https://www.encodeproject.org/files/ENCFF119UKJ/@@download/ENCFF119UKJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF685WLQ bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 5975222 ENCODE Processing Pipeline e1a4eb0ab7cac001a530003ac856e94e https://www.encodeproject.org/files/ENCFF685WLQ/@@download/ENCFF685WLQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF315ORF bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF236GOA, ENCFF322NTO, ENCFF666ATR, ENCFF785FLS 7079066 ENCODE Processing Pipeline 7419e99395ce2c80800b476ad4613771 https://www.encodeproject.org/files/ENCFF315ORF/@@download/ENCFF315ORF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF701GLE bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF685WLQ 11531715 ENCODE Processing Pipeline fa6c32b881b1496006af7ba809e45755 https://www.encodeproject.org/files/ENCFF701GLE/@@download/ENCFF701GLE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767ZHD bigBed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF538XDH 375520 ENCODE Processing Pipeline bc62e79f1a741e4882f696d15bbfd86d https://www.encodeproject.org/files/ENCFF767ZHD/@@download/ENCFF767ZHD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF063GEV bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF236GOA, ENCFF322NTO 1192705462 ENCODE Processing Pipeline 90b93e26803c6e90854340b4cb6415ec https://www.encodeproject.org/files/ENCFF063GEV/@@download/ENCFF063GEV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF808WNB bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF315ORF 11454406 ENCODE Processing Pipeline b405de4ecb7bef075657e0a293b02af3 https://www.encodeproject.org/files/ENCFF808WNB/@@download/ENCFF808WNB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF846PAN bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 1208232861 ENCODE Processing Pipeline 5fbae3c75833aa3c9703f2086d5b38dc https://www.encodeproject.org/files/ENCFF846PAN/@@download/ENCFF846PAN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF880USY bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF236GOA, ENCFF322NTO 1123549274 ENCODE Processing Pipeline d3cbe5d121917c262321dcede883d795 https://www.encodeproject.org/files/ENCFF880USY/@@download/ENCFF880USY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF579NTH bigBed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF381SBC 428897 ENCODE Processing Pipeline 7d65c3c2426dfcdb30b9c917766a4d82 https://www.encodeproject.org/files/ENCFF579NTH/@@download/ENCFF579NTH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF230QEQ bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF666ATR, ENCFF785FLS 5918946 ENCODE Processing Pipeline 4a88be15eb67be41308b604522254ce3 https://www.encodeproject.org/files/ENCFF230QEQ/@@download/ENCFF230QEQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF678JVP bigBed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF462AKP 433193 ENCODE Processing Pipeline 553bcb1c8c3d4177d7392b3ca236bb4c https://www.encodeproject.org/files/ENCFF678JVP/@@download/ENCFF678JVP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF941NOU bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 1203645483 ENCODE Processing Pipeline fdbe055fdb5b2a1012e78040b398f0ea https://www.encodeproject.org/files/ENCFF941NOU/@@download/ENCFF941NOU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF510XVV bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF666ATR, ENCFF785FLS 1123838334 ENCODE Processing Pipeline 6b75c6f2503b9a4f709e37bf1126c8d6 https://www.encodeproject.org/files/ENCFF510XVV/@@download/ENCFF510XVV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF744QJM bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF236GOA, ENCFF322NTO 5987091 ENCODE Processing Pipeline 192b958278b48b9d5b64111d962f62c9 https://www.encodeproject.org/files/ENCFF744QJM/@@download/ENCFF744QJM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF225GPH bigBed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF035BOY 381371 ENCODE Processing Pipeline 6108a5f3722ea4d7221f44f980fe3215 https://www.encodeproject.org/files/ENCFF225GPH/@@download/ENCFF225GPH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF111MGQ bigWig signal p-value ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF126ECH, ENCFF592WAL, ENCFF901CND, ENCFF949DKV 1920692184 ENCODE Processing Pipeline f705ac4dcfd1b7ea9a79cc8f04e73a48 https://www.encodeproject.org/files/ENCFF111MGQ/@@download/ENCFF111MGQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF041WNR bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF126ECH, ENCFF592WAL, ENCFF901CND, ENCFF949DKV 7061204 ENCODE Processing Pipeline 6d67e1b6f586f91869c2e7319efe2e5a https://www.encodeproject.org/files/ENCFF041WNR/@@download/ENCFF041WNR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF641GPG bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF119UKJ 11441072 ENCODE Processing Pipeline 68bb722b3cb5136b779c4c7a5da315fc https://www.encodeproject.org/files/ENCFF641GPG/@@download/ENCFF641GPG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF035BOY bed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF230QEQ, ENCFF315ORF, ENCFF419RSJ, ENCFF744QJM 166655 ENCODE Processing Pipeline 173c7e9d9767cdc54ad8cdb5d64c0036 https://www.encodeproject.org/files/ENCFF035BOY/@@download/ENCFF035BOY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF538XDH bed narrowPeak conservative idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF041WNR, ENCFF119UKJ, ENCFF685WLQ 163852 ENCODE Processing Pipeline 9e1ac4889ae50348ad6e94c9915c5570 https://www.encodeproject.org/files/ENCFF538XDH/@@download/ENCFF538XDH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF381SBC bed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF041WNR, ENCFF119UKJ, ENCFF685WLQ 198894 ENCODE Processing Pipeline 4eae90be6d7c11e1201772554bef3773 https://www.encodeproject.org/files/ENCFF381SBC/@@download/ENCFF381SBC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF980IVI bigWig fold change over control ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF236GOA, ENCFF322NTO, ENCFF666ATR, ENCFF785FLS 2136439972 ENCODE Processing Pipeline e9f081841ef5adcb6f6a5579836c1a95 https://www.encodeproject.org/files/ENCFF980IVI/@@download/ENCFF980IVI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF488PEW bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF230QEQ 11457796 ENCODE Processing Pipeline 3bca08aabcab1638c3513674e873d3e9 https://www.encodeproject.org/files/ENCFF488PEW/@@download/ENCFF488PEW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF906TFF bigBed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF744QJM 11555747 ENCODE Processing Pipeline 79255edf063c1dc6970a9be94993c40a https://www.encodeproject.org/files/ENCFF906TFF/@@download/ENCFF906TFF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF462AKP bed narrowPeak optimal idr thresholded peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF230QEQ, ENCFF315ORF, ENCFF419RSJ, ENCFF744QJM 200694 ENCODE Processing Pipeline 6d46f4a9cd441f9c68fbf2e24a762559 https://www.encodeproject.org/files/ENCFF462AKP/@@download/ENCFF462AKP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF294AGC fastq reads ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1919163960 Richard Myers, HAIB 240ec4967579220172a137482fc2a5b1 SRA:SRR5338547 https://www.encodeproject.org/files/ENCFF294AGC/@@download/ENCFF294AGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF896YTL fastq reads ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1959615336 Richard Myers, HAIB c6150bee437f46f520576db448ac4a78 SRA:SRR5338548 https://www.encodeproject.org/files/ENCFF896YTL/@@download/ENCFF896YTL.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF954XYL bam unfiltered alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF896YTL 2304807723 ENCODE Processing Pipeline af36cac9ad532306285c9efd00624c2c https://www.encodeproject.org/files/ENCFF954XYL/@@download/ENCFF954XYL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616OOK bam unfiltered alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF294AGC, ENCFF643CGH 2265836297 ENCODE Processing Pipeline 665e56721509bac7fa40d1c3e3bffe17 https://www.encodeproject.org/files/ENCFF616OOK/@@download/ENCFF616OOK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF087GAF bam unfiltered alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF294AGC, ENCFF807MUK 2259633941 ENCODE Processing Pipeline 066879dab304b3282a3b5ab96fa1c2c6 https://www.encodeproject.org/files/ENCFF087GAF/@@download/ENCFF087GAF.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF345CPI bam unfiltered alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF896YTL 2298560478 ENCODE Processing Pipeline 210d6c0be36c2a67e123ed69e0850264 https://www.encodeproject.org/files/ENCFF345CPI/@@download/ENCFF345CPI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF456NWN bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF896YTL 1783881200 ENCODE Processing Pipeline d84524bf97bfd9fc6f3cd860e7c4880a https://www.encodeproject.org/files/ENCFF456NWN/@@download/ENCFF456NWN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738KYR bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF294AGC, ENCFF807MUK 1757463790 ENCODE Processing Pipeline 2ad43eb6614180d82d64659a3696fe97 https://www.encodeproject.org/files/ENCFF738KYR/@@download/ENCFF738KYR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF331YOR bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF294AGC, ENCFF643CGH 1758746482 ENCODE Processing Pipeline 90cc60b7e789ab9ac1378be6929e4f8d https://www.encodeproject.org/files/ENCFF331YOR/@@download/ENCFF331YOR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF763FHB bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF896YTL 1782413450 ENCODE Processing Pipeline a7d2aca902d95441bacc41cfee800d9d https://www.encodeproject.org/files/ENCFF763FHB/@@download/ENCFF763FHB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887BNZ bigWig signal p-value ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF331YOR 665750768 ENCODE Processing Pipeline 627d358a9c5f46d0af55d5a949443482 https://www.encodeproject.org/files/ENCFF887BNZ/@@download/ENCFF887BNZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF739NCJ bigWig signal p-value ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF456NWN 702908273 ENCODE Processing Pipeline bba6e05b6a07ec09cc0031e6b0bc4e33 https://www.encodeproject.org/files/ENCFF739NCJ/@@download/ENCFF739NCJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463TTG bigWig fold change over control ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF456NWN 689133861 ENCODE Processing Pipeline 7a8381133b6f8bbd7f35a216ba7a00e9 https://www.encodeproject.org/files/ENCFF463TTG/@@download/ENCFF463TTG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF828SRG bigWig signal p-value ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF331YOR, ENCFF456NWN 630478939 ENCODE Processing Pipeline cf5d61a77c9f77817c7c8b92833ff298 https://www.encodeproject.org/files/ENCFF828SRG/@@download/ENCFF828SRG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF565UDM bigWig fold change over control ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF331YOR 663198048 ENCODE Processing Pipeline 1deaeb9d8286515b44705e609846589a https://www.encodeproject.org/files/ENCFF565UDM/@@download/ENCFF565UDM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF880MUQ bigWig fold change over control ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF331YOR, ENCFF456NWN 1000878681 ENCODE Processing Pipeline 902a054d66b84cda7c4d91af5040f4b3 https://www.encodeproject.org/files/ENCFF880MUQ/@@download/ENCFF880MUQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF566RVI bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF456NWN 6630954 ENCODE Processing Pipeline be29cf8b851f161e3cc9d14e1252a15a https://www.encodeproject.org/files/ENCFF566RVI/@@download/ENCFF566RVI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF172XQM bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF331YOR 7080679 ENCODE Processing Pipeline 8ab4f040cebf271b72df4aeb6235dc19 https://www.encodeproject.org/files/ENCFF172XQM/@@download/ENCFF172XQM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF780ORR bigBed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF566RVI 12618025 ENCODE Processing Pipeline f0d1e8f577f185b5ab51844fbec625ce https://www.encodeproject.org/files/ENCFF780ORR/@@download/ENCFF780ORR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF203OQD bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF331YOR, ENCFF456NWN 6940648 ENCODE Processing Pipeline 8c4acf8ef89e062069d13fde78595654 https://www.encodeproject.org/files/ENCFF203OQD/@@download/ENCFF203OQD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF722QEV bigBed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203OQD 12724816 ENCODE Processing Pipeline 048ad86b68a7170f5ebb9bbffb0a3781 https://www.encodeproject.org/files/ENCFF722QEV/@@download/ENCFF722QEV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF144QPP bigBed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF172XQM 12237547 ENCODE Processing Pipeline d32725d95aa08a17eaadfe7b4cd3aaab https://www.encodeproject.org/files/ENCFF144QPP/@@download/ENCFF144QPP.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF443INC bigBed narrowPeak conservative idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF429HYI 221153 ENCODE Processing Pipeline 739bffe1d774c5ba7674d76d20e8c66e https://www.encodeproject.org/files/ENCFF443INC/@@download/ENCFF443INC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF429HYI bed narrowPeak conservative idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF172XQM, ENCFF203OQD, ENCFF419RSJ, ENCFF566RVI 70310 ENCODE Processing Pipeline e4592f16afb18d6d5b9048e13f183a15 https://www.encodeproject.org/files/ENCFF429HYI/@@download/ENCFF429HYI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF252CVY bed narrowPeak optimal idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF172XQM, ENCFF203OQD, ENCFF419RSJ, ENCFF566RVI 132617 ENCODE Processing Pipeline 8aab2b28d5a238291403f989eadd3cca https://www.encodeproject.org/files/ENCFF252CVY/@@download/ENCFF252CVY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178NVK bigBed narrowPeak optimal idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF252CVY 335091 ENCODE Processing Pipeline 38e33b13b707deb957d5040eb4c8f733 https://www.encodeproject.org/files/ENCFF178NVK/@@download/ENCFF178NVK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF528HXU bigWig signal p-value ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738KYR 1446842233 ENCODE Processing Pipeline 74f394961b6648e72d201bf65c88c0ee https://www.encodeproject.org/files/ENCFF528HXU/@@download/ENCFF528HXU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF752MLU bigWig fold change over control ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738KYR 1218499434 ENCODE Processing Pipeline 07d69d94c9e21a86bd1595b0b37379a5 https://www.encodeproject.org/files/ENCFF752MLU/@@download/ENCFF752MLU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF793TAZ bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738KYR 7141361 ENCODE Processing Pipeline b58ab98a60822b8bb31fed0c10388cb7 https://www.encodeproject.org/files/ENCFF793TAZ/@@download/ENCFF793TAZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF208ZYM bigBed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF364IZN 12798785 ENCODE Processing Pipeline fef90492a38941aaa6b518787346d58b https://www.encodeproject.org/files/ENCFF208ZYM/@@download/ENCFF208ZYM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF285EPH bed narrowPeak conservative idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF364IZN, ENCFF465YUV, ENCFF793TAZ 83552 ENCODE Processing Pipeline fc6c27281f8a97222178753ac90cc495 https://www.encodeproject.org/files/ENCFF285EPH/@@download/ENCFF285EPH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF231NMD bigBed narrowPeak conservative idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF285EPH 249037 ENCODE Processing Pipeline b17d39f6f09766a931a58efe5a432165 https://www.encodeproject.org/files/ENCFF231NMD/@@download/ENCFF231NMD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF446XJC bigWig signal p-value ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF763FHB 1257395565 ENCODE Processing Pipeline 67f1ab875c9d8d415eee41be50de37ec https://www.encodeproject.org/files/ENCFF446XJC/@@download/ENCFF446XJC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF412QJJ bigBed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF465YUV 12546047 ENCODE Processing Pipeline 68ba5dcea234a49874504511382482bf https://www.encodeproject.org/files/ENCFF412QJJ/@@download/ENCFF412QJJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684UBK bigWig signal p-value ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF738KYR, ENCFF763FHB 1584565834 ENCODE Processing Pipeline 6327d22ae2315a7e7aecf7853eeefcb4 https://www.encodeproject.org/files/ENCFF684UBK/@@download/ENCFF684UBK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875BML bigWig fold change over control ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF763FHB 1057723831 ENCODE Processing Pipeline 784eae69488afd748ba2e688640042f3 https://www.encodeproject.org/files/ENCFF875BML/@@download/ENCFF875BML.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF830ZNT bigWig fold change over control ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF738KYR, ENCFF763FHB 1601623621 ENCODE Processing Pipeline 97e40bd52a9b46c99dbc1b717a7c1003 https://www.encodeproject.org/files/ENCFF830ZNT/@@download/ENCFF830ZNT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF364IZN bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF763FHB 6724470 ENCODE Processing Pipeline 14375e83a7360094fbedf46297c45188 https://www.encodeproject.org/files/ENCFF364IZN/@@download/ENCFF364IZN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF465YUV bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF738KYR, ENCFF763FHB 7145084 ENCODE Processing Pipeline 8ce1446665a443b5af8830c7f1676a8b https://www.encodeproject.org/files/ENCFF465YUV/@@download/ENCFF465YUV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF089DBA bigBed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF793TAZ 12526867 ENCODE Processing Pipeline ee8239f1c770959fc6590883175ea47b https://www.encodeproject.org/files/ENCFF089DBA/@@download/ENCFF089DBA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF662RMK bed narrowPeak optimal idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF364IZN, ENCFF465YUV, ENCFF793TAZ 97371 ENCODE Processing Pipeline 3322334db4a5e6f39c1944567c16b080 https://www.encodeproject.org/files/ENCFF662RMK/@@download/ENCFF662RMK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425VDA bigBed narrowPeak optimal idr thresholded peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF662RMK 274532 ENCODE Processing Pipeline 7031f1bfb7ff6a5b872a7b178a578afe https://www.encodeproject.org/files/ENCFF425VDA/@@download/ENCFF425VDA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF236GZM fastq reads ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF395GMN 3128379780 Michael Snyder, Stanford bab4b15d0e35a5d965370e599259525a https://www.encodeproject.org/files/ENCFF236GZM/@@download/ENCFF236GZM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF395GMN fastq reads ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF236GZM 3179860864 Michael Snyder, Stanford 7f27a52f2cca03a11bb96ffa0aec1541 https://www.encodeproject.org/files/ENCFF395GMN/@@download/ENCFF395GMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF359AZP fastq reads ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF361JMR 2904883003 Michael Snyder, Stanford 8f4bcb3eb48d260f1b05a16de3a194db https://www.encodeproject.org/files/ENCFF359AZP/@@download/ENCFF359AZP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF361JMR fastq reads ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF359AZP 2946320871 Michael Snyder, Stanford 9b55867eda6bbf682e0cadba379b2206 https://www.encodeproject.org/files/ENCFF361JMR/@@download/ENCFF361JMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF151TBQ bam unfiltered alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF359AZP, ENCFF361JMR, ENCFF643CGH 6350404201 ENCODE Processing Pipeline 3d393ac001c7e7966f92a84fca8ebe33 https://www.encodeproject.org/files/ENCFF151TBQ/@@download/ENCFF151TBQ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF249BJA bam unfiltered alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF236GZM, ENCFF395GMN, ENCFF643CGH 6722195177 ENCODE Processing Pipeline e59c6d77e7d4fda517006175c28bad1a https://www.encodeproject.org/files/ENCFF249BJA/@@download/ENCFF249BJA.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF346DYT bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF236GZM, ENCFF395GMN, ENCFF643CGH 5355982268 ENCODE Processing Pipeline 1ba03b23e1a5ad29b476b0e65bc107ed https://www.encodeproject.org/files/ENCFF346DYT/@@download/ENCFF346DYT.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF731EKP bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF359AZP, ENCFF361JMR, ENCFF643CGH 5032479600 ENCODE Processing Pipeline b594f7b0e8b0f4da9989d60e2dfd1ef6 https://www.encodeproject.org/files/ENCFF731EKP/@@download/ENCFF731EKP.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF534ZQZ bigWig signal p-value ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF346DYT, ENCFF910IKB 1128079757 ENCODE Processing Pipeline 9b96f3c41c28f81d32ad08db0edb1b03 https://www.encodeproject.org/files/ENCFF534ZQZ/@@download/ENCFF534ZQZ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF942MYK bigWig signal p-value ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF731EKP 1236890298 ENCODE Processing Pipeline 616934b884bee4fdef4d0e471d3671b6 https://www.encodeproject.org/files/ENCFF942MYK/@@download/ENCFF942MYK.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF523LUR bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF731EKP 6795373 ENCODE Processing Pipeline 97c2c1ec653b66d77a142de7e63819b2 https://www.encodeproject.org/files/ENCFF523LUR/@@download/ENCFF523LUR.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF861TVL bigBed narrowPeak conservative idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF286DHJ 922096 ENCODE Processing Pipeline b8715c3b8e94c47a84a6f4e03bf06ea6 https://www.encodeproject.org/files/ENCFF861TVL/@@download/ENCFF861TVL.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF053BQG bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF346DYT, ENCFF910IKB 6971939 ENCODE Processing Pipeline 7c2d203dbab5d94b33caec983244b5bb https://www.encodeproject.org/files/ENCFF053BQG/@@download/ENCFF053BQG.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF581NLW bigWig fold change over control ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF346DYT, ENCFF910IKB 1259920211 ENCODE Processing Pipeline c5d64b428daa70e4fdde995f5f8f487c https://www.encodeproject.org/files/ENCFF581NLW/@@download/ENCFF581NLW.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF689LWD bigWig fold change over control ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF346DYT, ENCFF731EKP, ENCFF910IKB 2203545375 ENCODE Processing Pipeline 33f1d9a9f9113cd42d4ab6795b64b74f https://www.encodeproject.org/files/ENCFF689LWD/@@download/ENCFF689LWD.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF523NBR bigBed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF523LUR 13203545 ENCODE Processing Pipeline 13544e983d2e434a7d45d6aaad94ad85 https://www.encodeproject.org/files/ENCFF523NBR/@@download/ENCFF523NBR.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF321AYZ bigWig signal p-value ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF346DYT, ENCFF731EKP, ENCFF910IKB 1785860026 ENCODE Processing Pipeline 6ee05652cf6b377de10bec3574777c80 https://www.encodeproject.org/files/ENCFF321AYZ/@@download/ENCFF321AYZ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF519RWJ bed narrowPeak optimal idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF053BQG, ENCFF419RSJ, ENCFF523LUR, ENCFF729RFA 714356 ENCODE Processing Pipeline ce3ad1a0d42079a4eecba3f7e22fd380 https://www.encodeproject.org/files/ENCFF519RWJ/@@download/ENCFF519RWJ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF827VZB bigWig fold change over control ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF731EKP 1198335946 ENCODE Processing Pipeline 74d8cac139e2d18ad4d6643b5aa46b9d https://www.encodeproject.org/files/ENCFF827VZB/@@download/ENCFF827VZB.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF729RFA bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF346DYT, ENCFF731EKP, ENCFF910IKB 7210661 ENCODE Processing Pipeline 541d5dcd1fe7a168345344655f75af6e https://www.encodeproject.org/files/ENCFF729RFA/@@download/ENCFF729RFA.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF942RDO bigBed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF053BQG 12758830 ENCODE Processing Pipeline f4ab5d6dabd5407fb4204e759a5fa9ce https://www.encodeproject.org/files/ENCFF942RDO/@@download/ENCFF942RDO.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF903BSG bigBed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF729RFA 12921926 ENCODE Processing Pipeline 8dd85cfde1e4044f1a113739e35cfc11 https://www.encodeproject.org/files/ENCFF903BSG/@@download/ENCFF903BSG.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF286DHJ bed narrowPeak conservative idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF053BQG, ENCFF419RSJ, ENCFF523LUR, ENCFF729RFA 442188 ENCODE Processing Pipeline 209cbc2f976d0d280ea772b28053ddd5 https://www.encodeproject.org/files/ENCFF286DHJ/@@download/ENCFF286DHJ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF272WTW bigBed narrowPeak optimal idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF519RWJ 1329297 ENCODE Processing Pipeline 3c7fab1b009054fa0d8dec67f03e8d5b https://www.encodeproject.org/files/ENCFF272WTW/@@download/ENCFF272WTW.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF811PSW bam unfiltered alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF359AZP, ENCFF361JMR, ENCFF807MUK 6343728610 ENCODE Processing Pipeline 442dccd6b30716d4f3d21efd3f23a107 https://www.encodeproject.org/files/ENCFF811PSW/@@download/ENCFF811PSW.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF326JFY bam unfiltered alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF236GZM, ENCFF395GMN, ENCFF807MUK 6717437228 ENCODE Processing Pipeline 7e6ff0f624993d157166518c64aa7296 https://www.encodeproject.org/files/ENCFF326JFY/@@download/ENCFF326JFY.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF304WKT bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF236GZM, ENCFF395GMN, ENCFF807MUK 5352413850 ENCODE Processing Pipeline 421185c5ba34dbdf876f2ea11f91ff1a https://www.encodeproject.org/files/ENCFF304WKT/@@download/ENCFF304WKT.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF333FLO bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF359AZP, ENCFF361JMR, ENCFF807MUK 5028659762 ENCODE Processing Pipeline 0144fdc6339c1b536edc8565cbde51c9 https://www.encodeproject.org/files/ENCFF333FLO/@@download/ENCFF333FLO.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF810FPN bigWig signal p-value ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF333FLO 1092984181 ENCODE Processing Pipeline efe401b804088a6ec73aa2adfbeacc22 https://www.encodeproject.org/files/ENCFF810FPN/@@download/ENCFF810FPN.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF439QSG bigBed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF380RMA 13184827 ENCODE Processing Pipeline 956f1aa5f9413ddcd9db1c814edddf7f https://www.encodeproject.org/files/ENCFF439QSG/@@download/ENCFF439QSG.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF071NFY bigBed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF368EUJ 12847737 ENCODE Processing Pipeline 9e7895f097ed220032b1094893514514 https://www.encodeproject.org/files/ENCFF071NFY/@@download/ENCFF071NFY.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF640FTG bigWig signal p-value ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF304WKT, ENCFF581ZJL 1276828895 ENCODE Processing Pipeline 1a07dd28dcc2c9255d966435adc73584 https://www.encodeproject.org/files/ENCFF640FTG/@@download/ENCFF640FTG.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF595TOQ bigWig fold change over control ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF333FLO 1211307798 ENCODE Processing Pipeline 7bec5b0571cd313dd1a74f873ff6d1b8 https://www.encodeproject.org/files/ENCFF595TOQ/@@download/ENCFF595TOQ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF843MKD bigBed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF399PWD 12913475 ENCODE Processing Pipeline 192d572825e8979e5cdf156891b835bf https://www.encodeproject.org/files/ENCFF843MKD/@@download/ENCFF843MKD.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF458TCO bed narrowPeak conservative idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF368EUJ, ENCFF380RMA, ENCFF399PWD 429870 ENCODE Processing Pipeline 7a37f1d95b64151dafe224c17bbcb87b https://www.encodeproject.org/files/ENCFF458TCO/@@download/ENCFF458TCO.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF431CAX bigWig signal p-value ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF304WKT, ENCFF333FLO, ENCFF581ZJL 2050977658 ENCODE Processing Pipeline 3c22b6e4c3af9aa3adaaefd113b5bb9a https://www.encodeproject.org/files/ENCFF431CAX/@@download/ENCFF431CAX.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF990HCZ bigWig fold change over control ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF304WKT, ENCFF581ZJL 1257730630 ENCODE Processing Pipeline 463ef30c02a7bf6fdafdc1ff19ff0a01 https://www.encodeproject.org/files/ENCFF990HCZ/@@download/ENCFF990HCZ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF915GWT bigWig fold change over control ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF304WKT, ENCFF333FLO, ENCFF581ZJL 2187857282 ENCODE Processing Pipeline 75e14961fce68d5911d6682823ba94f6 https://www.encodeproject.org/files/ENCFF915GWT/@@download/ENCFF915GWT.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF399PWD bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF304WKT, ENCFF581ZJL 7116658 ENCODE Processing Pipeline 45aaf01c6c66e2a1da2dd08eeffe4503 https://www.encodeproject.org/files/ENCFF399PWD/@@download/ENCFF399PWD.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF380RMA bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF333FLO 6789390 ENCODE Processing Pipeline 3e88a974bac6cd6198dc1f3be445c88e https://www.encodeproject.org/files/ENCFF380RMA/@@download/ENCFF380RMA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF368EUJ bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF304WKT, ENCFF333FLO, ENCFF581ZJL 7156152 ENCODE Processing Pipeline 66854d22b7924ae9074a67f725ad97a1 https://www.encodeproject.org/files/ENCFF368EUJ/@@download/ENCFF368EUJ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF473DOH bigBed narrowPeak conservative idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF458TCO 901780 ENCODE Processing Pipeline ce13c3c3d7e22db0e29c9a2ea5379987 https://www.encodeproject.org/files/ENCFF473DOH/@@download/ENCFF473DOH.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF490VVG bed narrowPeak optimal idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF368EUJ, ENCFF380RMA, ENCFF399PWD 687231 ENCODE Processing Pipeline fca556d6c89db48dae7c6c046425eeb5 https://www.encodeproject.org/files/ENCFF490VVG/@@download/ENCFF490VVG.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF202VDA bigBed narrowPeak optimal idr thresholded peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF490VVG 1290493 ENCODE Processing Pipeline 164a7be19a188c14aff53e9849e6e632 https://www.encodeproject.org/files/ENCFF202VDA/@@download/ENCFF202VDA.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF047PYS fastq reads ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 1 100 paired-ended 1 ENCFF320PNH 2353183774 Michael Snyder, Stanford da05da2be44117ebacebc2a2bd403aae SRA:SRR6213687 https://www.encodeproject.org/files/ENCFF047PYS/@@download/ENCFF047PYS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance ENCFF320PNH fastq reads ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 1 100 paired-ended 2 ENCFF047PYS 2351859543 Michael Snyder, Stanford 71b3d92c1ccc767b4c05e6dcff8a9011 SRA:SRR6213687 https://www.encodeproject.org/files/ENCFF320PNH/@@download/ENCFF320PNH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance ENCFF939DJP fastq reads ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 1 100 paired-ended 1 ENCFF450SIM 3294866345 Michael Snyder, Stanford 01ce9c54dcf5804057873533efada92d SRA:SRR6213688 https://www.encodeproject.org/files/ENCFF939DJP/@@download/ENCFF939DJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance ENCFF450SIM fastq reads ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 1 100 paired-ended 2 ENCFF939DJP 3246823171 Michael Snyder, Stanford b5d4dd66b418b69f2159bb2df1844a2a SRA:SRR6213688 https://www.encodeproject.org/files/ENCFF450SIM/@@download/ENCFF450SIM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance ENCFF938ZOQ bam unfiltered alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 100 ENCFF450SIM, ENCFF643CGH, ENCFF939DJP 7050106241 ENCODE Processing Pipeline 41dc2a3c47ad0ab7aa488ba59653709f https://www.encodeproject.org/files/ENCFF938ZOQ/@@download/ENCFF938ZOQ.bam GRCh38 released borderline replicate concordance ENCFF311FUR bam unfiltered alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 100 ENCFF047PYS, ENCFF320PNH, ENCFF643CGH 5249522724 ENCODE Processing Pipeline 567e7df0733e249faf0bf4a733b8a06e https://www.encodeproject.org/files/ENCFF311FUR/@@download/ENCFF311FUR.bam GRCh38 released borderline replicate concordance ENCFF464HDX bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 100 ENCFF047PYS, ENCFF320PNH, ENCFF643CGH 4479798122 ENCODE Processing Pipeline fb43a94a880b289bacbc5ee19f93a558 https://www.encodeproject.org/files/ENCFF464HDX/@@download/ENCFF464HDX.bam GRCh38 released borderline replicate concordance ENCFF435ZLQ bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 100 ENCFF450SIM, ENCFF643CGH, ENCFF939DJP 5747344626 ENCODE Processing Pipeline aaef0172e67e1f18ac98132611b07734 https://www.encodeproject.org/files/ENCFF435ZLQ/@@download/ENCFF435ZLQ.bam GRCh38 released borderline replicate concordance ENCFF400DRH bigWig signal p-value ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF190EPQ, ENCFF435ZLQ 1111197731 ENCODE Processing Pipeline 9f12dc16fded8fff77385a26db5db67a https://www.encodeproject.org/files/ENCFF400DRH/@@download/ENCFF400DRH.bigWig GRCh38 released borderline replicate concordance ENCFF947RXK bigWig signal p-value ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF464HDX, ENCFF950AXC 1156971832 ENCODE Processing Pipeline 31a2e05bf9103162d5c7343508b695b4 https://www.encodeproject.org/files/ENCFF947RXK/@@download/ENCFF947RXK.bigWig GRCh38 released borderline replicate concordance ENCFF665WQD bigWig signal p-value ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF435ZLQ, ENCFF464HDX, ENCFF950AXC 2032498304 ENCODE Processing Pipeline e664d160d531ada43181585a932fafc4 https://www.encodeproject.org/files/ENCFF665WQD/@@download/ENCFF665WQD.bigWig GRCh38 released borderline replicate concordance ENCFF482ENF bigWig fold change over control ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF190EPQ, ENCFF435ZLQ 1396168565 ENCODE Processing Pipeline a81b35c1b9366b4f03ded4a4231f6214 https://www.encodeproject.org/files/ENCFF482ENF/@@download/ENCFF482ENF.bigWig GRCh38 released borderline replicate concordance ENCFF037JHF bigWig fold change over control ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF464HDX, ENCFF950AXC 1099369697 ENCODE Processing Pipeline c98a7b02182ecc4ff894ef0fa49e51de https://www.encodeproject.org/files/ENCFF037JHF/@@download/ENCFF037JHF.bigWig GRCh38 released borderline replicate concordance ENCFF059GKZ bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF190EPQ, ENCFF435ZLQ 5582066 ENCODE Processing Pipeline 5d411361bbee2833d9f75b39212825c8 https://www.encodeproject.org/files/ENCFF059GKZ/@@download/ENCFF059GKZ.bed.gz GRCh38 released borderline replicate concordance ENCFF033RVQ bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF464HDX, ENCFF950AXC 5545920 ENCODE Processing Pipeline e400e0ef2a68d77848a4a460d0ec3c1d https://www.encodeproject.org/files/ENCFF033RVQ/@@download/ENCFF033RVQ.bed.gz GRCh38 released borderline replicate concordance ENCFF770IRM bigBed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF033RVQ 11380424 ENCODE Processing Pipeline 079464c9ab4aefed2c2d98a338704731 https://www.encodeproject.org/files/ENCFF770IRM/@@download/ENCFF770IRM.bigBed GRCh38 released borderline replicate concordance ENCFF126LMQ bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF435ZLQ, ENCFF464HDX, ENCFF950AXC 6970612 ENCODE Processing Pipeline 529a9f0e1bba39d6133517d9625d7fcc https://www.encodeproject.org/files/ENCFF126LMQ/@@download/ENCFF126LMQ.bed.gz GRCh38 released borderline replicate concordance ENCFF769HGU bigBed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF126LMQ 11695343 ENCODE Processing Pipeline 0f3658729ce47969fd8fdf781c84cb65 https://www.encodeproject.org/files/ENCFF769HGU/@@download/ENCFF769HGU.bigBed GRCh38 released borderline replicate concordance ENCFF328XWJ bed narrowPeak conservative idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF033RVQ, ENCFF059GKZ, ENCFF126LMQ, ENCFF419RSJ 16577 ENCODE Processing Pipeline e9cee9eebb9ef3076a8a2160cfbc85de https://www.encodeproject.org/files/ENCFF328XWJ/@@download/ENCFF328XWJ.bed.gz GRCh38 released borderline replicate concordance ENCFF108IZQ bed narrowPeak optimal idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF033RVQ, ENCFF059GKZ, ENCFF126LMQ, ENCFF419RSJ 48731 ENCODE Processing Pipeline 09d094f442a915a1bf6af85153e49445 https://www.encodeproject.org/files/ENCFF108IZQ/@@download/ENCFF108IZQ.bed.gz GRCh38 released borderline replicate concordance ENCFF933EFK bigBed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF059GKZ 11833473 ENCODE Processing Pipeline c56e38612192a26a4269e9d70bfa8033 https://www.encodeproject.org/files/ENCFF933EFK/@@download/ENCFF933EFK.bigBed GRCh38 released borderline replicate concordance ENCFF986RVV bigWig fold change over control ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF435ZLQ, ENCFF464HDX, ENCFF950AXC 2232855588 ENCODE Processing Pipeline 1a408f427e6a616490c7f06bba216de9 https://www.encodeproject.org/files/ENCFF986RVV/@@download/ENCFF986RVV.bigWig GRCh38 released borderline replicate concordance ENCFF441GMU bigBed narrowPeak optimal idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF108IZQ 156637 ENCODE Processing Pipeline 714063a40621c9f11714695208564c8e https://www.encodeproject.org/files/ENCFF441GMU/@@download/ENCFF441GMU.bigBed GRCh38 released borderline replicate concordance ENCFF465EWW bigBed narrowPeak conservative idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF328XWJ 94055 ENCODE Processing Pipeline 9b4269fe349fa982d859ea36ce89ecf3 https://www.encodeproject.org/files/ENCFF465EWW/@@download/ENCFF465EWW.bigBed GRCh38 released borderline replicate concordance ENCFF824HZV bam unfiltered alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 100 ENCFF047PYS, ENCFF320PNH, ENCFF807MUK 5239086423 ENCODE Processing Pipeline 47b21a70b08d907d40954dd5a26e9b8d https://www.encodeproject.org/files/ENCFF824HZV/@@download/ENCFF824HZV.bam hg19 released borderline replicate concordance ENCFF734CCF bam unfiltered alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 100 ENCFF450SIM, ENCFF807MUK, ENCFF939DJP 7037162441 ENCODE Processing Pipeline 6d270858b8ec05ddc72e07cdff4ebe83 https://www.encodeproject.org/files/ENCFF734CCF/@@download/ENCFF734CCF.bam hg19 released borderline replicate concordance ENCFF228PUZ bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 100 ENCFF450SIM, ENCFF807MUK, ENCFF939DJP 5730946124 ENCODE Processing Pipeline b848f6cf88286c03d54bc3afd3036d45 https://www.encodeproject.org/files/ENCFF228PUZ/@@download/ENCFF228PUZ.bam hg19 released borderline replicate concordance ENCFF226CEN bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 100 ENCFF047PYS, ENCFF320PNH, ENCFF807MUK 4467833430 ENCODE Processing Pipeline 946585dd71e24df555cfec154e20639f https://www.encodeproject.org/files/ENCFF226CEN/@@download/ENCFF226CEN.bam hg19 released borderline replicate concordance ENCFF737VWT bigWig fold change over control ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF226CEN, ENCFF999EQI 1069941116 ENCODE Processing Pipeline 897a758165aa2c9925f225cc3357bb70 https://www.encodeproject.org/files/ENCFF737VWT/@@download/ENCFF737VWT.bigWig hg19 released borderline replicate concordance ENCFF266YXT bigWig fold change over control ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF226CEN, ENCFF228PUZ, ENCFF449NNE, ENCFF999EQI 2250959544 ENCODE Processing Pipeline 356a24094d1d6b76c3bff7b9c3507b7c https://www.encodeproject.org/files/ENCFF266YXT/@@download/ENCFF266YXT.bigWig hg19 released borderline replicate concordance ENCFF644KCR bigBed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF234DZJ 11689103 ENCODE Processing Pipeline 2349c1bf489ffa499e661c584dffd26b https://www.encodeproject.org/files/ENCFF644KCR/@@download/ENCFF644KCR.bigBed hg19 released borderline replicate concordance ENCFF509GKY bigWig signal p-value ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF226CEN, ENCFF999EQI 1114671949 ENCODE Processing Pipeline 57bc25fc9ef146d5dab1a116efbd14e3 https://www.encodeproject.org/files/ENCFF509GKY/@@download/ENCFF509GKY.bigWig hg19 released borderline replicate concordance ENCFF943ZNH bigWig fold change over control ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF228PUZ, ENCFF449NNE 1392568297 ENCODE Processing Pipeline bf15eb57397ba8ee66685c7a6d2fc515 https://www.encodeproject.org/files/ENCFF943ZNH/@@download/ENCFF943ZNH.bigWig hg19 released borderline replicate concordance ENCFF503KQA bigBed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF875EQQ 11809683 ENCODE Processing Pipeline 997c06a6ab760f6b1e4c1391426095fe https://www.encodeproject.org/files/ENCFF503KQA/@@download/ENCFF503KQA.bigBed hg19 released borderline replicate concordance ENCFF199MZN bigBed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF437VMK 11357858 ENCODE Processing Pipeline 9cc7ffa2de05217982dba708a16a2a90 https://www.encodeproject.org/files/ENCFF199MZN/@@download/ENCFF199MZN.bigBed hg19 released borderline replicate concordance ENCFF569XCA bed narrowPeak optimal idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF001TDO, ENCFF234DZJ, ENCFF437VMK, ENCFF875EQQ 43938 ENCODE Processing Pipeline fa06ed25bf1a2fc1f65dfe212ada330b https://www.encodeproject.org/files/ENCFF569XCA/@@download/ENCFF569XCA.bed.gz hg19 released borderline replicate concordance ENCFF302AXX bigWig signal p-value ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF228PUZ, ENCFF449NNE 1201614967 ENCODE Processing Pipeline 4818cd907eaf87bf6db04feac78dbebe https://www.encodeproject.org/files/ENCFF302AXX/@@download/ENCFF302AXX.bigWig hg19 released borderline replicate concordance ENCFF814MJD bigBed narrowPeak conservative idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF020MBK 71701 ENCODE Processing Pipeline 2434082b4f6cbbbac784e07f46cd7be5 https://www.encodeproject.org/files/ENCFF814MJD/@@download/ENCFF814MJD.bigBed hg19 released borderline replicate concordance ENCFF437VMK bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF226CEN, ENCFF999EQI 5534124 ENCODE Processing Pipeline 68dba4cda1e0af055867c5657413b4a2 https://www.encodeproject.org/files/ENCFF437VMK/@@download/ENCFF437VMK.bed.gz hg19 released borderline replicate concordance ENCFF234DZJ bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF226CEN, ENCFF228PUZ, ENCFF449NNE, ENCFF999EQI 6928908 ENCODE Processing Pipeline 0bd75c110ca70470ef08633d2f03de9f https://www.encodeproject.org/files/ENCFF234DZJ/@@download/ENCFF234DZJ.bed.gz hg19 released borderline replicate concordance ENCFF602ECF bigBed narrowPeak optimal idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF569XCA 123033 ENCODE Processing Pipeline 9ff1104be0c021dfed9abe16050a5b7b https://www.encodeproject.org/files/ENCFF602ECF/@@download/ENCFF602ECF.bigBed hg19 released borderline replicate concordance ENCFF519NPX bigWig signal p-value ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF226CEN, ENCFF228PUZ, ENCFF449NNE, ENCFF999EQI 1898537082 ENCODE Processing Pipeline de407bf8865bb8564c0fbcdfcf90ccb1 https://www.encodeproject.org/files/ENCFF519NPX/@@download/ENCFF519NPX.bigWig hg19 released borderline replicate concordance ENCFF875EQQ bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF228PUZ, ENCFF449NNE 5572548 ENCODE Processing Pipeline 40fda2019f983361b3df27644ef4d7ab https://www.encodeproject.org/files/ENCFF875EQQ/@@download/ENCFF875EQQ.bed.gz hg19 released borderline replicate concordance ENCFF020MBK bed narrowPeak conservative idr thresholded peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF001TDO, ENCFF234DZJ, ENCFF437VMK, ENCFF875EQQ 12076 ENCODE Processing Pipeline 0c8ca5acc86d2187ab86663f0749463b https://www.encodeproject.org/files/ENCFF020MBK/@@download/ENCFF020MBK.bed.gz hg19 released borderline replicate concordance ENCFF070FBD fastq reads ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 1 36 single-ended 1212399692 Bradley Bernstein, Broad faa97b07ce8412ca467b3a1bc3ac709d SRA:SRR5832881 https://www.encodeproject.org/files/ENCFF070FBD/@@download/ENCFF070FBD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AYR/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF496ZOF fastq reads ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 1 30 paired-ended 2 ENCFF531XGH 298480667 Bradley Bernstein, Broad 5bc770a511ed0b5f87a3b0589ac720dc https://www.encodeproject.org/files/ENCFF496ZOF/@@download/ENCFF496ZOF.fastq.gz Illumina HiSeq 2500 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample missing controlled_by ENCFF531XGH fastq reads ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 1 30 paired-ended 1 ENCFF496ZOF 284632220 Bradley Bernstein, Broad eeba263fb1cca90d7182c9b8eef902a7 https://www.encodeproject.org/files/ENCFF531XGH/@@download/ENCFF531XGH.fastq.gz Illumina HiSeq 2500 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample missing controlled_by ENCFF706MMH fastq reads ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 1 76 single-ended 2266405543 Bradley Bernstein, Broad 21105c68482d92892918153d04c90fee SRA:SRR5832884 https://www.encodeproject.org/files/ENCFF706MMH/@@download/ENCFF706MMH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AXQ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF768XYK fastq reads ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 1 76 single-ended 1623406459 Bradley Bernstein, Broad 5be6a48e565467de4d66a69f799d2be6 SRA:SRR5832882 https://www.encodeproject.org/files/ENCFF768XYK/@@download/ENCFF768XYK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYR/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF178RPW fastq reads ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 1 76 single-ended 1578004351 Bradley Bernstein, Broad 62879e2f9134531bfc8ad33fb6e87fd6 SRA:SRR5832883 https://www.encodeproject.org/files/ENCFF178RPW/@@download/ENCFF178RPW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYR/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF605ELT bam unfiltered alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 36 ENCFF643CGH, ENCFF706MMH 1703242047 ENCODE Processing Pipeline 263d7ebb3173e799d8f29b47c6b68aab https://www.encodeproject.org/files/ENCFF605ELT/@@download/ENCFF605ELT.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF482HZN bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 36 ENCFF643CGH, ENCFF706MMH 967779560 ENCODE Processing Pipeline dcef204c4e007ccadf2916e3216e18d5 https://www.encodeproject.org/files/ENCFF482HZN/@@download/ENCFF482HZN.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF289DJO bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 36 ENCFF706MMH, ENCFF807MUK 968231906 ENCODE Processing Pipeline 37ecb32d970ae894e52a38c8879034ae https://www.encodeproject.org/files/ENCFF289DJO/@@download/ENCFF289DJO.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF661MKR bam unfiltered alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 36 ENCFF706MMH, ENCFF807MUK 1693715487 ENCODE Processing Pipeline 3cafc30686c0ab5bd1712246ab6b1405 https://www.encodeproject.org/files/ENCFF661MKR/@@download/ENCFF661MKR.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF692KAW bam unfiltered alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 36 ENCFF070FBD, ENCFF178RPW, ENCFF643CGH, ENCFF768XYK 3597921270 ENCODE Processing Pipeline db8f940669c855eb400f800dd16dbc39 https://www.encodeproject.org/files/ENCFF692KAW/@@download/ENCFF692KAW.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF969KEW bam unfiltered alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 36 ENCFF070FBD, ENCFF178RPW, ENCFF768XYK, ENCFF807MUK 3575184253 ENCODE Processing Pipeline a1a23c306ca9623bd5577005515de6ed https://www.encodeproject.org/files/ENCFF969KEW/@@download/ENCFF969KEW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF467UCR bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 36 ENCFF070FBD, ENCFF178RPW, ENCFF643CGH, ENCFF768XYK 2190985471 ENCODE Processing Pipeline ce73fb8a45ab6454ccecc5f8a20ed3de https://www.encodeproject.org/files/ENCFF467UCR/@@download/ENCFF467UCR.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF485TGQ bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 36 ENCFF070FBD, ENCFF178RPW, ENCFF768XYK, ENCFF807MUK 2191634431 ENCODE Processing Pipeline d8a6c5df14b56cdd01e3100ef7b61f3d https://www.encodeproject.org/files/ENCFF485TGQ/@@download/ENCFF485TGQ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF003UTE bigWig signal p-value ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF467UCR, ENCFF482HZN, ENCFF631ENA, ENCFF838RMJ 1108350907 ENCODE Processing Pipeline df8fda9e32a702e1bc5ac3ada7dd89fd https://www.encodeproject.org/files/ENCFF003UTE/@@download/ENCFF003UTE.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF487XMK bigWig signal p-value ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF467UCR, ENCFF631ENA, ENCFF838RMJ 1159777930 ENCODE Processing Pipeline ca3b7d84294e28f094e633bcbfd55545 https://www.encodeproject.org/files/ENCFF487XMK/@@download/ENCFF487XMK.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF584PUZ bigWig signal p-value ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 1149268369 ENCODE Processing Pipeline 8fd78138ec55712cef1b8111a549cebc https://www.encodeproject.org/files/ENCFF584PUZ/@@download/ENCFF584PUZ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF844WBL bigWig fold change over control ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF289DJO, ENCFF815IAY 542442067 ENCODE Processing Pipeline 2cb1216cc7de68c2c5498eef965d202d https://www.encodeproject.org/files/ENCFF844WBL/@@download/ENCFF844WBL.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF899PAG bigWig signal p-value ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF482HZN, ENCFF838RMJ 574848956 ENCODE Processing Pipeline 238fcaacf2062a5dfbe1797179d9f333 https://www.encodeproject.org/files/ENCFF899PAG/@@download/ENCFF899PAG.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF724XMM bigWig signal p-value ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF289DJO, ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 1108500815 ENCODE Processing Pipeline 17a89bc542e3424cf19d6b44e52156c5 https://www.encodeproject.org/files/ENCFF724XMM/@@download/ENCFF724XMM.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF846TNA bigWig signal p-value ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF289DJO, ENCFF815IAY 572875075 ENCODE Processing Pipeline 2ea352fd15d495f6c47c61fb81ae7167 https://www.encodeproject.org/files/ENCFF846TNA/@@download/ENCFF846TNA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF156NYI bigWig fold change over control ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 1143543137 ENCODE Processing Pipeline 287b1ff2b9b540f1b811674ef8d19209 https://www.encodeproject.org/files/ENCFF156NYI/@@download/ENCFF156NYI.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF372PTI bigWig fold change over control ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF467UCR, ENCFF631ENA, ENCFF838RMJ 1154676009 ENCODE Processing Pipeline 799fdefef3d2a6ae38634a6de0dd62eb https://www.encodeproject.org/files/ENCFF372PTI/@@download/ENCFF372PTI.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF447JVN bigWig fold change over control ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF482HZN, ENCFF838RMJ 548348009 ENCODE Processing Pipeline e3cc9164fbbcde8cb61e58a700c135f1 https://www.encodeproject.org/files/ENCFF447JVN/@@download/ENCFF447JVN.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF026UBH bigWig fold change over control ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF289DJO, ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 1479329858 ENCODE Processing Pipeline edfcbe63c792064880d19417eb17efe1 https://www.encodeproject.org/files/ENCFF026UBH/@@download/ENCFF026UBH.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF945BEK bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 6466783 ENCODE Processing Pipeline 2ca64a8ab91602a3a67b28af44f89918 https://www.encodeproject.org/files/ENCFF945BEK/@@download/ENCFF945BEK.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF071DMU bigWig fold change over control ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF467UCR, ENCFF482HZN, ENCFF631ENA, ENCFF838RMJ 1477933914 ENCODE Processing Pipeline eb3f40beca830f4912afcd369d9330be https://www.encodeproject.org/files/ENCFF071DMU/@@download/ENCFF071DMU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF239RCX bigBed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF669EAC 13394890 ENCODE Processing Pipeline 8321e9f5762edec574bd0317c507943b https://www.encodeproject.org/files/ENCFF239RCX/@@download/ENCFF239RCX.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF691RYI bed narrowPeak conservative idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF539MLU, ENCFF669EAC, ENCFF945BEK 55811 ENCODE Processing Pipeline 0cecb6d55486b48e7e7f55c5c62a9dc8 https://www.encodeproject.org/files/ENCFF691RYI/@@download/ENCFF691RYI.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF671YME bigBed narrowPeak conservative idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF691RYI 226917 ENCODE Processing Pipeline 28745066393e83ce949b07152b474267 https://www.encodeproject.org/files/ENCFF671YME/@@download/ENCFF671YME.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF005CYV bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF482HZN, ENCFF838RMJ 4341564 ENCODE Processing Pipeline a5dc7dbe93b8a696edff0f2b4b3d65d3 https://www.encodeproject.org/files/ENCFF005CYV/@@download/ENCFF005CYV.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF780FCM bigBed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF539MLU 11089622 ENCODE Processing Pipeline 6bbc6f4b3f2cd2ed5cd8fe4d4ddfe98b https://www.encodeproject.org/files/ENCFF780FCM/@@download/ENCFF780FCM.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF713PCO bigBed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF005CYV 11085017 ENCODE Processing Pipeline 23c67fe3633957413592442ec55efede https://www.encodeproject.org/files/ENCFF713PCO/@@download/ENCFF713PCO.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF988KAT bigBed narrowPeak optimal idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF038MZK 249730 ENCODE Processing Pipeline 61a90cf17c075246636003a1d082b8cf https://www.encodeproject.org/files/ENCFF988KAT/@@download/ENCFF988KAT.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF669EAC bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF289DJO, ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 7038901 ENCODE Processing Pipeline e4a0dbe6b1c60e122336d357d9083bff https://www.encodeproject.org/files/ENCFF669EAC/@@download/ENCFF669EAC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF449TAT bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF467UCR, ENCFF631ENA, ENCFF838RMJ 6504186 ENCODE Processing Pipeline 167b174553f4404343908a3e72238257 https://www.encodeproject.org/files/ENCFF449TAT/@@download/ENCFF449TAT.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF539MLU bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF289DJO, ENCFF815IAY 4349535 ENCODE Processing Pipeline 2a8915c9747200df2bcf044c32f91d18 https://www.encodeproject.org/files/ENCFF539MLU/@@download/ENCFF539MLU.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF019KZP bigBed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF945BEK 13362836 ENCODE Processing Pipeline c44d984db9e0a1c3989d6e1c9f8c3678 https://www.encodeproject.org/files/ENCFF019KZP/@@download/ENCFF019KZP.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF602AIZ bigBed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF449TAT 13359975 ENCODE Processing Pipeline dfcac5d390182274131d2ce8b951b102 https://www.encodeproject.org/files/ENCFF602AIZ/@@download/ENCFF602AIZ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF009DKY bed narrowPeak optimal idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF005CYV, ENCFF419RSJ, ENCFF449TAT, ENCFF994GJD 77531 ENCODE Processing Pipeline a300e84ed159e00f89da728147380ac1 https://www.encodeproject.org/files/ENCFF009DKY/@@download/ENCFF009DKY.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF994GJD bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF467UCR, ENCFF482HZN, ENCFF631ENA, ENCFF838RMJ 7032717 ENCODE Processing Pipeline 4c6440131ca91569924d0c88182e887c https://www.encodeproject.org/files/ENCFF994GJD/@@download/ENCFF994GJD.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF355NPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF009DKY 251630 ENCODE Processing Pipeline 5a822f0aff6af91cc69d1643ab39b099 https://www.encodeproject.org/files/ENCFF355NPQ/@@download/ENCFF355NPQ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF038MZK bed narrowPeak optimal idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF539MLU, ENCFF669EAC, ENCFF945BEK 78237 ENCODE Processing Pipeline 0bafc2c533ebff4696c7daaefd3bf334 https://www.encodeproject.org/files/ENCFF038MZK/@@download/ENCFF038MZK.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF456YNB bigBed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF994GJD 13396110 ENCODE Processing Pipeline 93a4ba944f94704a48d0dfb25307769b https://www.encodeproject.org/files/ENCFF456YNB/@@download/ENCFF456YNB.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF745PYF bed narrowPeak conservative idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF005CYV, ENCFF419RSJ, ENCFF449TAT, ENCFF994GJD 57231 ENCODE Processing Pipeline d5ac4f09438dff0f615fdfb95deee79e https://www.encodeproject.org/files/ENCFF745PYF/@@download/ENCFF745PYF.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF265PZS bigBed narrowPeak conservative idr thresholded peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1, 2 ENCFF745PYF 231847 ENCODE Processing Pipeline 3243bd6b3cabebed406ebf9797c9f5dc https://www.encodeproject.org/files/ENCFF265PZS/@@download/ENCFF265PZS.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF843CJY fastq reads ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF548UJE 2800615446 Michael Snyder, Stanford b46dc0cec33e2a2e540cd7428d4f3a32 SRA:SRR6213236 https://www.encodeproject.org/files/ENCFF843CJY/@@download/ENCFF843CJY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF548UJE fastq reads ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF843CJY 2812684635 Michael Snyder, Stanford 39f68db030b8d89eda2172d4add93772 SRA:SRR6213236 https://www.encodeproject.org/files/ENCFF548UJE/@@download/ENCFF548UJE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF424SGO fastq reads ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF104MAP 3081626992 Michael Snyder, Stanford ab5cf8856afb5d8b6c3214b728e266b2 SRA:SRR6213237 https://www.encodeproject.org/files/ENCFF424SGO/@@download/ENCFF424SGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF104MAP fastq reads ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF424SGO 3110075503 Michael Snyder, Stanford 8553ec689e48632d1b371906a2ee2998 SRA:SRR6213237 https://www.encodeproject.org/files/ENCFF104MAP/@@download/ENCFF104MAP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF138ZAX bam unfiltered alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF104MAP, ENCFF424SGO, ENCFF643CGH 6641653785 ENCODE Processing Pipeline 5c778831748c1fcf362e0591e7cd7c8b https://www.encodeproject.org/files/ENCFF138ZAX/@@download/ENCFF138ZAX.bam GRCh38 released ENCFF618RFZ bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF548UJE, ENCFF643CGH, ENCFF843CJY 4715181415 ENCODE Processing Pipeline 604e782b6d6521363fd12c15bd543910 https://www.encodeproject.org/files/ENCFF618RFZ/@@download/ENCFF618RFZ.bam GRCh38 released ENCFF663OKZ bam unfiltered alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF548UJE, ENCFF643CGH, ENCFF843CJY 5890192170 ENCODE Processing Pipeline 127fecb7295023238b69b3fc47292abb https://www.encodeproject.org/files/ENCFF663OKZ/@@download/ENCFF663OKZ.bam GRCh38 released ENCFF950DAI bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF104MAP, ENCFF424SGO, ENCFF643CGH 5617502332 ENCODE Processing Pipeline 9942fabd403c60967a549472e7a9b76d https://www.encodeproject.org/files/ENCFF950DAI/@@download/ENCFF950DAI.bam GRCh38 released ENCFF706ANW bigWig signal p-value ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF950DAI 1254378898 ENCODE Processing Pipeline 6705ea014395986d55c49a6e75b13e50 https://www.encodeproject.org/files/ENCFF706ANW/@@download/ENCFF706ANW.bigWig GRCh38 released ENCFF015ERX bigWig signal p-value ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF618RFZ 1100492788 ENCODE Processing Pipeline 2401e7f68e59bde41cc5ccab45714662 https://www.encodeproject.org/files/ENCFF015ERX/@@download/ENCFF015ERX.bigWig GRCh38 released ENCFF654LYL bigWig signal p-value ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF618RFZ, ENCFF950DAI 1499918438 ENCODE Processing Pipeline 5d35309afe2097b95dd9a8474fdd14e8 https://www.encodeproject.org/files/ENCFF654LYL/@@download/ENCFF654LYL.bigWig GRCh38 released ENCFF454SIK bigWig fold change over control ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF950DAI 1166878337 ENCODE Processing Pipeline 890fd5dd9e7f88d2923c2b095757b7db https://www.encodeproject.org/files/ENCFF454SIK/@@download/ENCFF454SIK.bigWig GRCh38 released ENCFF867OIE bigWig fold change over control ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF618RFZ 1032536349 ENCODE Processing Pipeline 91bd55b424a1d4ad39fa607f69ca79a3 https://www.encodeproject.org/files/ENCFF867OIE/@@download/ENCFF867OIE.bigWig GRCh38 released ENCFF993QJW bigWig fold change over control ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF618RFZ, ENCFF950DAI 2051609533 ENCODE Processing Pipeline a45fc454f94330365b281ab62f76a33f https://www.encodeproject.org/files/ENCFF993QJW/@@download/ENCFF993QJW.bigWig GRCh38 released ENCFF567EYJ bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF950DAI 6773418 ENCODE Processing Pipeline ebd301e99fc9c01c3193a138d1c881e0 https://www.encodeproject.org/files/ENCFF567EYJ/@@download/ENCFF567EYJ.bed.gz GRCh38 released ENCFF696OVM bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF618RFZ 6694540 ENCODE Processing Pipeline 4dfca3995188ea7f85a910ae096abbd0 https://www.encodeproject.org/files/ENCFF696OVM/@@download/ENCFF696OVM.bed.gz GRCh38 released ENCFF422AIU bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF618RFZ, ENCFF950DAI 7205874 ENCODE Processing Pipeline 9279bca4a35336237c16cc28fb54bd3d https://www.encodeproject.org/files/ENCFF422AIU/@@download/ENCFF422AIU.bed.gz GRCh38 released ENCFF883LRJ bed narrowPeak optimal idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF422AIU, ENCFF567EYJ, ENCFF696OVM 868232 ENCODE Processing Pipeline 08d82028210c2b818c631fb6866dbe6a https://www.encodeproject.org/files/ENCFF883LRJ/@@download/ENCFF883LRJ.bed.gz GRCh38 released ENCFF544BQG bigBed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF567EYJ 13486688 ENCODE Processing Pipeline 38718b9d5f5a769fee05dc3a16b05308 https://www.encodeproject.org/files/ENCFF544BQG/@@download/ENCFF544BQG.bigBed GRCh38 released ENCFF480MHP bigBed narrowPeak conservative idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF462DNS 1036899 ENCODE Processing Pipeline aee434dcb4872967e1ecca1005497759 https://www.encodeproject.org/files/ENCFF480MHP/@@download/ENCFF480MHP.bigBed GRCh38 released ENCFF101YIW bigBed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF696OVM 11540380 ENCODE Processing Pipeline 96e9db1fea11ec6637478ec73d63b115 https://www.encodeproject.org/files/ENCFF101YIW/@@download/ENCFF101YIW.bigBed GRCh38 released ENCFF836TBL bigBed narrowPeak optimal idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF883LRJ 1786254 ENCODE Processing Pipeline 28934bc07a0d7231b8f64296ca944474 https://www.encodeproject.org/files/ENCFF836TBL/@@download/ENCFF836TBL.bigBed GRCh38 released ENCFF724RPF bigBed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF422AIU 13847579 ENCODE Processing Pipeline c661604628929caa0da1b6de3b6ac5fc https://www.encodeproject.org/files/ENCFF724RPF/@@download/ENCFF724RPF.bigBed GRCh38 released ENCFF462DNS bed narrowPeak conservative idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF422AIU, ENCFF567EYJ, ENCFF696OVM 584053 ENCODE Processing Pipeline 9f25be9334ee7c239a497d2fdc1ccded https://www.encodeproject.org/files/ENCFF462DNS/@@download/ENCFF462DNS.bed.gz GRCh38 released ENCFF989LMZ bam unfiltered alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF548UJE, ENCFF807MUK, ENCFF843CJY 5890099407 ENCODE Processing Pipeline e8abebb9503e89084f87c430d4f418a1 https://www.encodeproject.org/files/ENCFF989LMZ/@@download/ENCFF989LMZ.bam hg19 released ENCFF854BKY bam unfiltered alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF104MAP, ENCFF424SGO, ENCFF807MUK 6633443225 ENCODE Processing Pipeline 5e7a7aedf5e5c15d59f06913df8b5736 https://www.encodeproject.org/files/ENCFF854BKY/@@download/ENCFF854BKY.bam hg19 released ENCFF130QXF bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF104MAP, ENCFF424SGO, ENCFF807MUK 5600709587 ENCODE Processing Pipeline adfbb80331229e0343246b1870b9f41f https://www.encodeproject.org/files/ENCFF130QXF/@@download/ENCFF130QXF.bam hg19 released ENCFF050NKD bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF548UJE, ENCFF807MUK, ENCFF843CJY 4691268833 ENCODE Processing Pipeline 3e1b39f0e28fa44e524ccd6927c9578f https://www.encodeproject.org/files/ENCFF050NKD/@@download/ENCFF050NKD.bam hg19 released ENCFF452JXH bigWig signal p-value ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF050NKD, ENCFF130QXF, ENCFF583FAG 1801665297 ENCODE Processing Pipeline e7173a2020e909d683b05704c2c25b82 https://www.encodeproject.org/files/ENCFF452JXH/@@download/ENCFF452JXH.bigWig hg19 released ENCFF658QZJ bigWig fold change over control ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF130QXF, ENCFF583FAG 1173378992 ENCODE Processing Pipeline fedecf277fc34c1c14760fabc681bebf https://www.encodeproject.org/files/ENCFF658QZJ/@@download/ENCFF658QZJ.bigWig hg19 released ENCFF783CTL bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF130QXF, ENCFF583FAG 6775719 ENCODE Processing Pipeline bfd1a9f1978dd0fb81625c4d63561168 https://www.encodeproject.org/files/ENCFF783CTL/@@download/ENCFF783CTL.bed.gz hg19 released ENCFF790WFD bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF050NKD, ENCFF130QXF, ENCFF583FAG 7187932 ENCODE Processing Pipeline 961f698b35917211860c62b422601568 https://www.encodeproject.org/files/ENCFF790WFD/@@download/ENCFF790WFD.bed.gz hg19 released ENCFF954XTO bigWig fold change over control ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF050NKD, ENCFF130QXF, ENCFF583FAG 2042479210 ENCODE Processing Pipeline 261a61c7ab56a14cec589e41538bf14d https://www.encodeproject.org/files/ENCFF954XTO/@@download/ENCFF954XTO.bigWig hg19 released ENCFF342ZYG bigBed narrowPeak optimal idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF445LQN 1759220 ENCODE Processing Pipeline 4ff4eeb70176b54a2d069c84d64621c6 https://www.encodeproject.org/files/ENCFF342ZYG/@@download/ENCFF342ZYG.bigBed hg19 released ENCFF897YHB bed narrowPeak conservative idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF040JIX, ENCFF783CTL, ENCFF790WFD 571102 ENCODE Processing Pipeline d7067065a3612367651d311a5b52aca4 https://www.encodeproject.org/files/ENCFF897YHB/@@download/ENCFF897YHB.bed.gz hg19 released ENCFF480BTB bigWig signal p-value ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF130QXF, ENCFF583FAG 1115616533 ENCODE Processing Pipeline 679d81e7537830edc3fd59933432cb65 https://www.encodeproject.org/files/ENCFF480BTB/@@download/ENCFF480BTB.bigWig hg19 released ENCFF504PQS bigWig signal p-value ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF050NKD 1139436718 ENCODE Processing Pipeline dfe29e1fea5d98b649b6e668699271db https://www.encodeproject.org/files/ENCFF504PQS/@@download/ENCFF504PQS.bigWig hg19 released ENCFF786XOG bigWig fold change over control ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF050NKD 1026131917 ENCODE Processing Pipeline fb032f150812ec508e9df5f856c4e3cd https://www.encodeproject.org/files/ENCFF786XOG/@@download/ENCFF786XOG.bigWig hg19 released ENCFF040JIX bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF050NKD 6678531 ENCODE Processing Pipeline 1eceb155397a8fdbb45fbee0b4bbd89e https://www.encodeproject.org/files/ENCFF040JIX/@@download/ENCFF040JIX.bed.gz hg19 released ENCFF256BTA bigBed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF783CTL 13482499 ENCODE Processing Pipeline 59f8fe3d8df8f5d1ff1f4fe977e217e7 https://www.encodeproject.org/files/ENCFF256BTA/@@download/ENCFF256BTA.bigBed hg19 released ENCFF260LQI bigBed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF790WFD 13837142 ENCODE Processing Pipeline 9e3f5aaaaa0441a8935170ccb8900a4e https://www.encodeproject.org/files/ENCFF260LQI/@@download/ENCFF260LQI.bigBed hg19 released ENCFF630CMD bigBed narrowPeak conservative idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF897YHB 1015501 ENCODE Processing Pipeline a320c9e8444f4a05dc41d6df451c428a https://www.encodeproject.org/files/ENCFF630CMD/@@download/ENCFF630CMD.bigBed hg19 released ENCFF445LQN bed narrowPeak optimal idr thresholded peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF040JIX, ENCFF783CTL, ENCFF790WFD 851936 ENCODE Processing Pipeline 70561ac7f1ddb5a4e1c45eb02ab2b02c https://www.encodeproject.org/files/ENCFF445LQN/@@download/ENCFF445LQN.bed.gz hg19 released ENCFF479WZY bigBed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF040JIX 11511721 ENCODE Processing Pipeline 33e4ae123520f4bb79569d3013aad743 https://www.encodeproject.org/files/ENCFF479WZY/@@download/ENCFF479WZY.bigBed hg19 released ENCFF720DMM fastq reads ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1023383318 Richard Myers, HAIB fb462ad272c7b762f2d9efb513e4da12 SRA:SRR5331360 https://www.encodeproject.org/files/ENCFF720DMM/@@download/ENCFF720DMM.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099NTW fastq reads ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1573727489 Richard Myers, HAIB d97fe1fb6134cf59c65cab8e7904a091 SRA:SRR5331361 https://www.encodeproject.org/files/ENCFF099NTW/@@download/ENCFF099NTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF479TTQ bam unfiltered alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 76 ENCFF720DMM, ENCFF807MUK 1235759112 ENCODE Processing Pipeline 4a576de6fd6bc7283a0bfd4615806fd6 https://www.encodeproject.org/files/ENCFF479TTQ/@@download/ENCFF479TTQ.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF794CFE bam unfiltered alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF720DMM 1238623232 ENCODE Processing Pipeline aa3470ea2053eddfba8ac1dbeb026aa4 https://www.encodeproject.org/files/ENCFF794CFE/@@download/ENCFF794CFE.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003LPH bam unfiltered alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 76 ENCFF099NTW, ENCFF807MUK 1803926108 ENCODE Processing Pipeline 0c5e3404efe1fdc96092bfeed0484466 https://www.encodeproject.org/files/ENCFF003LPH/@@download/ENCFF003LPH.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF880CKR bam unfiltered alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 76 ENCFF099NTW, ENCFF643CGH 1806710517 ENCODE Processing Pipeline d58d4792632ef84ee826d9495369edfa https://www.encodeproject.org/files/ENCFF880CKR/@@download/ENCFF880CKR.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF967IZV bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 76 ENCFF720DMM, ENCFF807MUK 965887552 ENCODE Processing Pipeline c36aa8e9a1b3bced61e3fea6fcaee748 https://www.encodeproject.org/files/ENCFF967IZV/@@download/ENCFF967IZV.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF753MGD bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF720DMM 966382220 ENCODE Processing Pipeline bc7caec21b623db61ec3a7189965b476 https://www.encodeproject.org/files/ENCFF753MGD/@@download/ENCFF753MGD.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531SFF bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 76 ENCFF099NTW, ENCFF643CGH 1399392666 ENCODE Processing Pipeline 58cab34339e20cd3b9349999ea9c02a4 https://www.encodeproject.org/files/ENCFF531SFF/@@download/ENCFF531SFF.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF787PIX bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 76 ENCFF099NTW, ENCFF807MUK 1398977159 ENCODE Processing Pipeline 2fbfda063d4add327cb892ac64907738 https://www.encodeproject.org/files/ENCFF787PIX/@@download/ENCFF787PIX.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF737WKD bigWig signal p-value ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF753MGD 492119432 ENCODE Processing Pipeline 2707ce2ddb13fc5733d09aa871aecd4b https://www.encodeproject.org/files/ENCFF737WKD/@@download/ENCFF737WKD.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF572SOY bigWig signal p-value ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF531SFF, ENCFF753MGD 657383367 ENCODE Processing Pipeline 96976c1163d313c9c07c2cdcd341cc1d https://www.encodeproject.org/files/ENCFF572SOY/@@download/ENCFF572SOY.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501MQB bigWig signal p-value ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF531SFF 598511343 ENCODE Processing Pipeline 1740ed3e70190dc4707efcd425106e3c https://www.encodeproject.org/files/ENCFF501MQB/@@download/ENCFF501MQB.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738GDC bigWig fold change over control ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF753MGD 392487694 ENCODE Processing Pipeline 77b987a455ec46a410729bb4f0b4a811 https://www.encodeproject.org/files/ENCFF738GDC/@@download/ENCFF738GDC.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617KRI bigWig fold change over control ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF531SFF 546722500 ENCODE Processing Pipeline 450915e68a4bdbb586c3cf0cefe2026b https://www.encodeproject.org/files/ENCFF617KRI/@@download/ENCFF617KRI.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF856NOM bigWig fold change over control ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF531SFF, ENCFF753MGD 800712103 ENCODE Processing Pipeline f9d4b832fdfd8e888c7c4c8fc9a05d11 https://www.encodeproject.org/files/ENCFF856NOM/@@download/ENCFF856NOM.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF165JRJ bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF531SFF, ENCFF753MGD 7032244 ENCODE Processing Pipeline 388a159f35987eebc5c1469608393c45 https://www.encodeproject.org/files/ENCFF165JRJ/@@download/ENCFF165JRJ.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF937OOK bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF531SFF 6798882 ENCODE Processing Pipeline de7e28d5a1ef4c3ece7ba3d57322af26 https://www.encodeproject.org/files/ENCFF937OOK/@@download/ENCFF937OOK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF174LTL bigBed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF937OOK 12564604 ENCODE Processing Pipeline 10d24fabe8206d78c4a15903bdda5b03 https://www.encodeproject.org/files/ENCFF174LTL/@@download/ENCFF174LTL.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF386PVB bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF753MGD 5825469 ENCODE Processing Pipeline 6a0e532a30513e3d657c7453dd8d002d https://www.encodeproject.org/files/ENCFF386PVB/@@download/ENCFF386PVB.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF591BFJ bigBed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF386PVB 13092000 ENCODE Processing Pipeline 1d4924169605d36da990920b5fe2ceea https://www.encodeproject.org/files/ENCFF591BFJ/@@download/ENCFF591BFJ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF842LKY bed narrowPeak conservative idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF165JRJ, ENCFF386PVB, ENCFF419RSJ, ENCFF937OOK 313151 ENCODE Processing Pipeline 83ceb1fa92bd48f03a7cd3c2a72cc697 https://www.encodeproject.org/files/ENCFF842LKY/@@download/ENCFF842LKY.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF420NTD bigBed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF165JRJ 12681144 ENCODE Processing Pipeline 5f68bd1327336686e7069985d199bd9f https://www.encodeproject.org/files/ENCFF420NTD/@@download/ENCFF420NTD.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782UVH bigBed narrowPeak conservative idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF842LKY 635926 ENCODE Processing Pipeline ceabbef90cab3b612fa42f57efc22071 https://www.encodeproject.org/files/ENCFF782UVH/@@download/ENCFF782UVH.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF020HIP bigBed narrowPeak optimal idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF293UEL 782570 ENCODE Processing Pipeline 46140bed86eac9e6eac66167210b30c3 https://www.encodeproject.org/files/ENCFF020HIP/@@download/ENCFF020HIP.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF293UEL bed narrowPeak optimal idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF165JRJ, ENCFF386PVB, ENCFF419RSJ, ENCFF937OOK 410954 ENCODE Processing Pipeline 4d1140623b196fdbcba6ab07590937e3 https://www.encodeproject.org/files/ENCFF293UEL/@@download/ENCFF293UEL.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF646YQB bigWig signal p-value ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF967IZV 1113164791 ENCODE Processing Pipeline abdc142fa6e44f9eabf41dc4bd252744 https://www.encodeproject.org/files/ENCFF646YQB/@@download/ENCFF646YQB.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF353NFS bigWig signal p-value ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF787PIX 1176657927 ENCODE Processing Pipeline e44eda097031743049dadbec162a6134 https://www.encodeproject.org/files/ENCFF353NFS/@@download/ENCFF353NFS.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF673RNL bigWig signal p-value ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF787PIX, ENCFF967IZV 1400100485 ENCODE Processing Pipeline c9eb15de6d8389f0fd44903ac5780dec https://www.encodeproject.org/files/ENCFF673RNL/@@download/ENCFF673RNL.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF804WJE bigWig fold change over control ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF967IZV 991223802 ENCODE Processing Pipeline 92de8a10951bf49e1e3c3707b2071ae5 https://www.encodeproject.org/files/ENCFF804WJE/@@download/ENCFF804WJE.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF303MNL bigWig fold change over control ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF787PIX 1007434387 ENCODE Processing Pipeline 51eed68d9c995202fa20848caaa40def https://www.encodeproject.org/files/ENCFF303MNL/@@download/ENCFF303MNL.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392EGH bigWig fold change over control ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF787PIX, ENCFF967IZV 1378321363 ENCODE Processing Pipeline 5b39af8f76cf87d77d86f03d75987961 https://www.encodeproject.org/files/ENCFF392EGH/@@download/ENCFF392EGH.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF254LDX bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF967IZV 7013563 ENCODE Processing Pipeline 0e58a5c7fbe4d0b92aff2b009ebde20f https://www.encodeproject.org/files/ENCFF254LDX/@@download/ENCFF254LDX.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF186TPL bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF787PIX, ENCFF967IZV 7063073 ENCODE Processing Pipeline 28dde6260424a7856e05d4a3d18f70e6 https://www.encodeproject.org/files/ENCFF186TPL/@@download/ENCFF186TPL.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF204ZSE bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF787PIX 6839707 ENCODE Processing Pipeline b5a0136170a4633f73b54ca8cfa23117 https://www.encodeproject.org/files/ENCFF204ZSE/@@download/ENCFF204ZSE.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262KST bigBed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF254LDX 12623307 ENCODE Processing Pipeline 56e37956a6702b845e8b57c04066ac16 https://www.encodeproject.org/files/ENCFF262KST/@@download/ENCFF262KST.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF885RCP bigBed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF204ZSE 12256662 ENCODE Processing Pipeline f92aefb56bed6233c7364060fa2104c0 https://www.encodeproject.org/files/ENCFF885RCP/@@download/ENCFF885RCP.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF029LIH bigBed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF186TPL 12532621 ENCODE Processing Pipeline 099995f9a9834dd95e6fc90f2811e608 https://www.encodeproject.org/files/ENCFF029LIH/@@download/ENCFF029LIH.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF035CBR bed narrowPeak conservative idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF186TPL, ENCFF204ZSE, ENCFF254LDX 245744 ENCODE Processing Pipeline 48130b3346e25f446c3375b8557567ea https://www.encodeproject.org/files/ENCFF035CBR/@@download/ENCFF035CBR.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF267SMR bigBed narrowPeak conservative idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF035CBR 568500 ENCODE Processing Pipeline a86446b9221250b2c2ecf378f6e4b748 https://www.encodeproject.org/files/ENCFF267SMR/@@download/ENCFF267SMR.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF618UVR bigBed narrowPeak optimal idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF035FOK 788223 ENCODE Processing Pipeline d9f9351e8b31b3301d1279469ba4d429 https://www.encodeproject.org/files/ENCFF618UVR/@@download/ENCFF618UVR.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF035FOK bed narrowPeak optimal idr thresholded peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF186TPL, ENCFF204ZSE, ENCFF254LDX 387506 ENCODE Processing Pipeline 239c79ccbedbef467f24262c682114cd https://www.encodeproject.org/files/ENCFF035FOK/@@download/ENCFF035FOK.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF100NWH fastq reads ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 1 ENCFF594FPL 1737966809 Michael Snyder, Stanford 2a69d62f53fae35183433347161f586d SRA:SRR6214379 https://www.encodeproject.org/files/ENCFF100NWH/@@download/ENCFF100NWH.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF594FPL fastq reads ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 2 ENCFF100NWH 2062516689 Michael Snyder, Stanford ca6500c8c3a5e8cd80e4f2132afdae0c SRA:SRR6214379 https://www.encodeproject.org/files/ENCFF594FPL/@@download/ENCFF594FPL.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF902KOT fastq reads ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 1 100 paired-ended 1 ENCFF499MPN 1986861205 Michael Snyder, Stanford 9fce5d9831c5240bca1c343285130a25 SRA:SRR6214378 https://www.encodeproject.org/files/ENCFF902KOT/@@download/ENCFF902KOT.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF499MPN fastq reads ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 1 100 paired-ended 2 ENCFF902KOT 2374977145 Michael Snyder, Stanford 9c0d2aaf56caeac9f7676719eb0a5a88 SRA:SRR6214378 https://www.encodeproject.org/files/ENCFF499MPN/@@download/ENCFF499MPN.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF334YKJ bam unfiltered alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 100 ENCFF100NWH, ENCFF594FPL, ENCFF643CGH 3280039901 ENCODE Processing Pipeline 6d03124ccf32ca148665a3689c326f81 https://www.encodeproject.org/files/ENCFF334YKJ/@@download/ENCFF334YKJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF008CUX bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 100 ENCFF499MPN, ENCFF643CGH, ENCFF902KOT 2160188884 ENCODE Processing Pipeline b634b7a7acd2cb6dc69ee3e787289408 https://www.encodeproject.org/files/ENCFF008CUX/@@download/ENCFF008CUX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF549MBS bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 100 ENCFF100NWH, ENCFF594FPL, ENCFF643CGH 1859190467 ENCODE Processing Pipeline 96f614ace15c64570d5b67b0189c3311 https://www.encodeproject.org/files/ENCFF549MBS/@@download/ENCFF549MBS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF085YFB bam unfiltered alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 100 ENCFF499MPN, ENCFF643CGH, ENCFF902KOT 3681631141 ENCODE Processing Pipeline a73ae8f6a34e2cb3b593318df1f7dc93 https://www.encodeproject.org/files/ENCFF085YFB/@@download/ENCFF085YFB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF373XUA bigBed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF836JVP 13248258 ENCODE Processing Pipeline b411b61f3566db6590b215e557183a77 https://www.encodeproject.org/files/ENCFF373XUA/@@download/ENCFF373XUA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF700QOB bigBed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF715XCG 13309176 ENCODE Processing Pipeline 48cdb7bafea1ed7b9d794bdfbd8cf1c4 https://www.encodeproject.org/files/ENCFF700QOB/@@download/ENCFF700QOB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF423KCR bigWig signal p-value ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF008CUX, ENCFF790TAN 876854436 ENCODE Processing Pipeline 7c5a3157beb21bbbf7c586546c96f777 https://www.encodeproject.org/files/ENCFF423KCR/@@download/ENCFF423KCR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF244RGG bigWig fold change over control ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF008CUX, ENCFF790TAN 919164875 ENCODE Processing Pipeline d8f3706f302986dc871d505e99d6496d https://www.encodeproject.org/files/ENCFF244RGG/@@download/ENCFF244RGG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF378PWA bigWig fold change over control ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF008CUX, ENCFF549MBS, ENCFF712WXB, ENCFF790TAN 1785974511 ENCODE Processing Pipeline bb604665e6d1d799b49e14e3b1ec3a0a https://www.encodeproject.org/files/ENCFF378PWA/@@download/ENCFF378PWA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF055LOU bigWig fold change over control ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF549MBS, ENCFF712WXB 852968789 ENCODE Processing Pipeline fbc6ccff741229f1cf7dc48505d359ef https://www.encodeproject.org/files/ENCFF055LOU/@@download/ENCFF055LOU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF836JVP bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF549MBS, ENCFF712WXB 5999010 ENCODE Processing Pipeline 249ca7c1a1dcff6534966d47c89fb73f https://www.encodeproject.org/files/ENCFF836JVP/@@download/ENCFF836JVP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF221UCP bigBed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF239JIE 11173441 ENCODE Processing Pipeline 4ddcccbe8dcee06345c4be5f68b86802 https://www.encodeproject.org/files/ENCFF221UCP/@@download/ENCFF221UCP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF778RTF bigBed narrowPeak conservative idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF270PLW 350487 ENCODE Processing Pipeline de53a60722cc552b2bf7ed0933d76901 https://www.encodeproject.org/files/ENCFF778RTF/@@download/ENCFF778RTF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF379IFF bigWig signal p-value ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF549MBS, ENCFF712WXB 886275076 ENCODE Processing Pipeline 667b1c457d316a06479b0aad98250113 https://www.encodeproject.org/files/ENCFF379IFF/@@download/ENCFF379IFF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF364ZPD bigWig signal p-value ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF008CUX, ENCFF549MBS, ENCFF712WXB, ENCFF790TAN 1632696057 ENCODE Processing Pipeline 2c91382396289179a495616d262de5d3 https://www.encodeproject.org/files/ENCFF364ZPD/@@download/ENCFF364ZPD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF239JIE bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF008CUX, ENCFF790TAN 5865333 ENCODE Processing Pipeline da0fa3d73529c424e09c5abf56b6b4f0 https://www.encodeproject.org/files/ENCFF239JIE/@@download/ENCFF239JIE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF715XCG bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF008CUX, ENCFF549MBS, ENCFF712WXB, ENCFF790TAN 6963216 ENCODE Processing Pipeline f44c4dc6dd551b9a0f588fc918dd8e81 https://www.encodeproject.org/files/ENCFF715XCG/@@download/ENCFF715XCG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF270PLW bed narrowPeak conservative idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF239JIE, ENCFF419RSJ, ENCFF715XCG, ENCFF836JVP 163058 ENCODE Processing Pipeline 8ad8a6b225ba8f9685198c544907104a https://www.encodeproject.org/files/ENCFF270PLW/@@download/ENCFF270PLW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF515YFU bed narrowPeak optimal idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF239JIE, ENCFF419RSJ, ENCFF715XCG, ENCFF836JVP 239443 ENCODE Processing Pipeline 8752a1dbef9a6536bb34bc31cad123b3 https://www.encodeproject.org/files/ENCFF515YFU/@@download/ENCFF515YFU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF716UDC bigBed narrowPeak optimal idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF515YFU 458398 ENCODE Processing Pipeline 6418214b9b8b7f71bd2d2757f92b1e3c https://www.encodeproject.org/files/ENCFF716UDC/@@download/ENCFF716UDC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF051WRC bam unfiltered alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 100 ENCFF499MPN, ENCFF807MUK, ENCFF902KOT 3683521104 ENCODE Processing Pipeline fdb3367f44d6e67d49ebdb99b601bccc https://www.encodeproject.org/files/ENCFF051WRC/@@download/ENCFF051WRC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF594DTN bam unfiltered alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 100 ENCFF100NWH, ENCFF594FPL, ENCFF807MUK 3281188825 ENCODE Processing Pipeline 9e6ba1a7d10c4b3485ed5c6d31c800cf https://www.encodeproject.org/files/ENCFF594DTN/@@download/ENCFF594DTN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF839XNR bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 100 ENCFF499MPN, ENCFF807MUK, ENCFF902KOT 2159513349 ENCODE Processing Pipeline 36d2e7a2a2b18e4052ccaf77db9bacce https://www.encodeproject.org/files/ENCFF839XNR/@@download/ENCFF839XNR.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF082MPF bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 100 ENCFF100NWH, ENCFF594FPL, ENCFF807MUK 1858610726 ENCODE Processing Pipeline df9b1576b5d61a846c96e740701e1d25 https://www.encodeproject.org/files/ENCFF082MPF/@@download/ENCFF082MPF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF277LMC bigWig fold change over control ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF082MPF, ENCFF160VXC, ENCFF834TUP, ENCFF839XNR 1783911829 ENCODE Processing Pipeline a4f351e55162744b114b388930f95927 https://www.encodeproject.org/files/ENCFF277LMC/@@download/ENCFF277LMC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF433ZFX bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF082MPF, ENCFF834TUP 5891678 ENCODE Processing Pipeline 682e9aba849cd0eeaa24e1017405ec66 https://www.encodeproject.org/files/ENCFF433ZFX/@@download/ENCFF433ZFX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF047KXM bigBed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF324CAZ 13293585 ENCODE Processing Pipeline 24507cba7b11a05e6137b930a8e2dc6c https://www.encodeproject.org/files/ENCFF047KXM/@@download/ENCFF047KXM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF515JZL bigWig signal p-value ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF160VXC, ENCFF839XNR 990904143 ENCODE Processing Pipeline d1e3883478a6eb24eb29ce76eca52fb2 https://www.encodeproject.org/files/ENCFF515JZL/@@download/ENCFF515JZL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF204XOX bigWig signal p-value ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF082MPF, ENCFF834TUP 1013299724 ENCODE Processing Pipeline 2af91443dc3adbbd8b8a9fc735fe0f58 https://www.encodeproject.org/files/ENCFF204XOX/@@download/ENCFF204XOX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF273NDQ bigWig signal p-value ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF082MPF, ENCFF160VXC, ENCFF834TUP, ENCFF839XNR 1529466509 ENCODE Processing Pipeline f7d7c774aab48448722fe32a9463d867 https://www.encodeproject.org/files/ENCFF273NDQ/@@download/ENCFF273NDQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF490QJK bigWig fold change over control ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF160VXC, ENCFF839XNR 918619002 ENCODE Processing Pipeline ae6bc0566044c7d27ce9f08809b86ba6 https://www.encodeproject.org/files/ENCFF490QJK/@@download/ENCFF490QJK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF902MEJ bigWig fold change over control ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF082MPF, ENCFF834TUP 852178373 ENCODE Processing Pipeline 8f709b116c6962c367820a0723010d7d https://www.encodeproject.org/files/ENCFF902MEJ/@@download/ENCFF902MEJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF784OAB bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF160VXC, ENCFF839XNR 5864789 ENCODE Processing Pipeline 956d30c471c2d20a4afb3582b7d39e7d https://www.encodeproject.org/files/ENCFF784OAB/@@download/ENCFF784OAB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF324CAZ bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF082MPF, ENCFF160VXC, ENCFF834TUP, ENCFF839XNR 6957977 ENCODE Processing Pipeline 8e14f0003fe0863336bead67e79c33be https://www.encodeproject.org/files/ENCFF324CAZ/@@download/ENCFF324CAZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF403UAW bigBed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 ENCFF784OAB 11158809 ENCODE Processing Pipeline 90827274b161ac30273e124d00a782a2 https://www.encodeproject.org/files/ENCFF403UAW/@@download/ENCFF403UAW.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF342GEK bigBed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 ENCFF433ZFX 13185969 ENCODE Processing Pipeline ed138282bf89b69d1ad5282b7c7db5f8 https://www.encodeproject.org/files/ENCFF342GEK/@@download/ENCFF342GEK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF591UOR bed narrowPeak conservative idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF001TDO, ENCFF324CAZ, ENCFF433ZFX, ENCFF784OAB 162311 ENCODE Processing Pipeline a8bba108801e3d5d8a4d273aa09208db https://www.encodeproject.org/files/ENCFF591UOR/@@download/ENCFF591UOR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF651GBA bigBed narrowPeak conservative idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF591UOR 347880 ENCODE Processing Pipeline a7ef612fc13d5ac7459e0c3f2d5858f8 https://www.encodeproject.org/files/ENCFF651GBA/@@download/ENCFF651GBA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF776YPS bed narrowPeak optimal idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF001TDO, ENCFF324CAZ, ENCFF433ZFX, ENCFF784OAB 232581 ENCODE Processing Pipeline 5c0614ca3f5ea89ffbd81ad107a5c28e https://www.encodeproject.org/files/ENCFF776YPS/@@download/ENCFF776YPS.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF277AUN bigBed narrowPeak optimal idr thresholded peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF776YPS 446480 ENCODE Processing Pipeline 231a4031fdb8faa1dec15afe218aaee0 https://www.encodeproject.org/files/ENCFF277AUN/@@download/ENCFF277AUN.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF368ZQP fastq reads ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1321134319 Richard Myers, HAIB 1e5569b140834045cfa639587d4669dc https://www.encodeproject.org/files/ENCFF368ZQP/@@download/ENCFF368ZQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF369ABT bam unfiltered alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF368ZQP, ENCFF643CGH 1563904539 ENCODE Processing Pipeline 7340ad79097a34cf65e0e15b1d0949ff https://www.encodeproject.org/files/ENCFF369ABT/@@download/ENCFF369ABT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF511UIK bam unfiltered alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF368ZQP, ENCFF807MUK 1560775536 ENCODE Processing Pipeline ea768a2011e704b15019c4601f1d7c0d https://www.encodeproject.org/files/ENCFF511UIK/@@download/ENCFF511UIK.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF581OTA bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF368ZQP, ENCFF807MUK 1149184398 ENCODE Processing Pipeline a2bb03bfeb561df8819c930f8c80df11 https://www.encodeproject.org/files/ENCFF581OTA/@@download/ENCFF581OTA.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF402HWO bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF368ZQP, ENCFF643CGH 1149636130 ENCODE Processing Pipeline b808f3711646b53716a1083990359530 https://www.encodeproject.org/files/ENCFF402HWO/@@download/ENCFF402HWO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF053UHJ fastq reads ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 1315480157 Richard Myers, HAIB ea677cbc03db2ae48c6d7b50c12a6253 https://www.encodeproject.org/files/ENCFF053UHJ/@@download/ENCFF053UHJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF439ABB bam unfiltered alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF053UHJ, ENCFF643CGH 1607858611 ENCODE Processing Pipeline 94beec260b275abb9fead4258eaac714 https://www.encodeproject.org/files/ENCFF439ABB/@@download/ENCFF439ABB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF179PFG bam unfiltered alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF053UHJ, ENCFF807MUK 1603999680 ENCODE Processing Pipeline 916a588cf6c79ddbb2e990056a3094ec https://www.encodeproject.org/files/ENCFF179PFG/@@download/ENCFF179PFG.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF932YLF bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF053UHJ, ENCFF643CGH 1247739437 ENCODE Processing Pipeline 5ca1e940e0e1da0e8c8894a937f05ba1 https://www.encodeproject.org/files/ENCFF932YLF/@@download/ENCFF932YLF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF927XWG bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF053UHJ, ENCFF807MUK 1247158957 ENCODE Processing Pipeline 2f4a96420fd7f068febc341704bb48d6 https://www.encodeproject.org/files/ENCFF927XWG/@@download/ENCFF927XWG.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF773GMR bigWig fold change over control ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF402HWO 448227164 ENCODE Processing Pipeline 713f2678c4ebcef93da3af8d0a9fd674 https://www.encodeproject.org/files/ENCFF773GMR/@@download/ENCFF773GMR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF747HUJ bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF927XWG 5963569 ENCODE Processing Pipeline faa10e17b7d0cbfc92df30cb1d24f4be https://www.encodeproject.org/files/ENCFF747HUJ/@@download/ENCFF747HUJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF866INJ bigWig fold change over control ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF402HWO, ENCFF932YLF 748616789 ENCODE Processing Pipeline 4a2d727b6e0a198b7f9b113c35227d4c https://www.encodeproject.org/files/ENCFF866INJ/@@download/ENCFF866INJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF790UNB bigWig signal p-value ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF581OTA 572855928 ENCODE Processing Pipeline 9dabe6155e5c58eeb424e6ca55dd9ab9 https://www.encodeproject.org/files/ENCFF790UNB/@@download/ENCFF790UNB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF933WIH bigWig signal p-value ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF402HWO 494726550 ENCODE Processing Pipeline f8b0c77d59be322dcd4be290056093b0 https://www.encodeproject.org/files/ENCFF933WIH/@@download/ENCFF933WIH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF777XBQ bigWig signal p-value ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF932YLF 514459781 ENCODE Processing Pipeline 8905066763128ef297c55dd5ad3c1cf1 https://www.encodeproject.org/files/ENCFF777XBQ/@@download/ENCFF777XBQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF141LAD bigWig signal p-value ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF581OTA, ENCFF927XWG 660371742 ENCODE Processing Pipeline 9849a7235f96513450e79b6d26897fde https://www.encodeproject.org/files/ENCFF141LAD/@@download/ENCFF141LAD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF744NCL bigWig fold change over control ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF932YLF 433547933 ENCODE Processing Pipeline 43d268f1351bd5387bb8cdd5d2cd1046 https://www.encodeproject.org/files/ENCFF744NCL/@@download/ENCFF744NCL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF756FRU bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF402HWO, ENCFF932YLF 6749910 ENCODE Processing Pipeline e63f6d8fc943e21815c9e05b0e40744c https://www.encodeproject.org/files/ENCFF756FRU/@@download/ENCFF756FRU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF371AJU bigWig signal p-value ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF927XWG 536157330 ENCODE Processing Pipeline 7096fbde78f8161289e37af107caff2c https://www.encodeproject.org/files/ENCFF371AJU/@@download/ENCFF371AJU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF971EXT bigWig fold change over control ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF927XWG 451892052 ENCODE Processing Pipeline 7e11d6a5ba2b9617e4d73275d3848bd3 https://www.encodeproject.org/files/ENCFF971EXT/@@download/ENCFF971EXT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF885JHN bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF581OTA 6249790 ENCODE Processing Pipeline cb6d35784d01014255949dc177b443da https://www.encodeproject.org/files/ENCFF885JHN/@@download/ENCFF885JHN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF642KYY bigWig fold change over control ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF581OTA 476235509 ENCODE Processing Pipeline f69bdaf2b94eb2dcd67f3d1d6ae9f5d2 https://www.encodeproject.org/files/ENCFF642KYY/@@download/ENCFF642KYY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF831GAT bigWig signal p-value ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF402HWO, ENCFF932YLF 660773419 ENCODE Processing Pipeline deb594b50972e4af713477e265b00faa https://www.encodeproject.org/files/ENCFF831GAT/@@download/ENCFF831GAT.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF500WWA bigWig fold change over control ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF581OTA, ENCFF927XWG 751724345 ENCODE Processing Pipeline 9e0c0458f219a4b5685d4487eaf242a3 https://www.encodeproject.org/files/ENCFF500WWA/@@download/ENCFF500WWA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF999VKG bigBed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF747HUJ 13113749 ENCODE Processing Pipeline 54f413e3db606870ba30b49cdce3d266 https://www.encodeproject.org/files/ENCFF999VKG/@@download/ENCFF999VKG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF035YMH bed narrowPeak conservative idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF747HUJ, ENCFF885JHN, ENCFF933XJC 229911 ENCODE Processing Pipeline 4a84b220ffddb4aac2054c310b8074b6 https://www.encodeproject.org/files/ENCFF035YMH/@@download/ENCFF035YMH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF675KMQ bigBed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF885JHN 12947081 ENCODE Processing Pipeline d30e75aa0c21089b85ce4f4f7d328fd3 https://www.encodeproject.org/files/ENCFF675KMQ/@@download/ENCFF675KMQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF585CRE bigBed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF407ZRH 13024599 ENCODE Processing Pipeline a857819de3c90c1cf857416fe84f15a0 https://www.encodeproject.org/files/ENCFF585CRE/@@download/ENCFF585CRE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF505JMW bed narrowPeak optimal idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF407ZRH, ENCFF419RSJ, ENCFF503HFZ, ENCFF756FRU 267559 ENCODE Processing Pipeline b7dc1ebaaa34d9fdfc5974ba63590575 https://www.encodeproject.org/files/ENCFF505JMW/@@download/ENCFF505JMW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF474ISK bigBed narrowPeak optimal idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF336YRU 548865 ENCODE Processing Pipeline 087891f2a73d738e631e8c46fbd66505 https://www.encodeproject.org/files/ENCFF474ISK/@@download/ENCFF474ISK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF407ZRH bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF402HWO 6125611 ENCODE Processing Pipeline 2c942ac11a6f87ce194eb178f2c0bdfc https://www.encodeproject.org/files/ENCFF407ZRH/@@download/ENCFF407ZRH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF503HFZ bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF932YLF 5959262 ENCODE Processing Pipeline a0a2bb7484724d1fb9f7a42fa9618bfc https://www.encodeproject.org/files/ENCFF503HFZ/@@download/ENCFF503HFZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF375YSA bigBed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF503HFZ 13112459 ENCODE Processing Pipeline 1b91073fbe93c15fbfdf83e9cdb667d1 https://www.encodeproject.org/files/ENCFF375YSA/@@download/ENCFF375YSA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF586IXU bigBed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF756FRU 12958710 ENCODE Processing Pipeline 32ec11f86fe46bcaf4f442eeec39d6a2 https://www.encodeproject.org/files/ENCFF586IXU/@@download/ENCFF586IXU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF441QAZ bigBed narrowPeak conservative idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF256XPZ 526516 ENCODE Processing Pipeline 698a3733ca0951180f5b460f0268ab77 https://www.encodeproject.org/files/ENCFF441QAZ/@@download/ENCFF441QAZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF680EBE bigBed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF933XJC 12919246 ENCODE Processing Pipeline 27c382b27ec625ee8e1f107d5d336865 https://www.encodeproject.org/files/ENCFF680EBE/@@download/ENCFF680EBE.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF933XJC bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF581OTA, ENCFF927XWG 6779745 ENCODE Processing Pipeline fbba1bf1fe20bd3f19f52f2e359fd93b https://www.encodeproject.org/files/ENCFF933XJC/@@download/ENCFF933XJC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF256XPZ bed narrowPeak conservative idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF407ZRH, ENCFF419RSJ, ENCFF503HFZ, ENCFF756FRU 242046 ENCODE Processing Pipeline 93d92b550f884bb75dcce0bcb45485b8 https://www.encodeproject.org/files/ENCFF256XPZ/@@download/ENCFF256XPZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF647SAG bigBed narrowPeak optimal idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF505JMW 567079 ENCODE Processing Pipeline 91e6ba6f2953ad2c63aa01ae54a6c1d3 https://www.encodeproject.org/files/ENCFF647SAG/@@download/ENCFF647SAG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF336YRU bed narrowPeak optimal idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF747HUJ, ENCFF885JHN, ENCFF933XJC 255799 ENCODE Processing Pipeline e66efb157f19a09eb2342f71add5062b https://www.encodeproject.org/files/ENCFF336YRU/@@download/ENCFF336YRU.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF840WEN bigBed narrowPeak conservative idr thresholded peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF035YMH 504651 ENCODE Processing Pipeline c2b1311441d3f14408bd6aeba584fef6 https://www.encodeproject.org/files/ENCFF840WEN/@@download/ENCFF840WEN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF091COJ fastq reads ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF892KUR 4178320277 Michael Snyder, Stanford d6fbb10dff247f969f059ce3650bba04 SRA:SRR6213892 https://www.encodeproject.org/files/ENCFF091COJ/@@download/ENCFF091COJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF892KUR fastq reads ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF091COJ 4288024656 Michael Snyder, Stanford 447b738d5e1426dbf00b15536058c0bd SRA:SRR6213892 https://www.encodeproject.org/files/ENCFF892KUR/@@download/ENCFF892KUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF402HLR fastq reads ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF803NZA 3042946142 Michael Snyder, Stanford b51f7bc358b45f9495054d6ff44a5e84 SRA:SRR6213891 https://www.encodeproject.org/files/ENCFF402HLR/@@download/ENCFF402HLR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF803NZA fastq reads ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF402HLR 3118560790 Michael Snyder, Stanford 7b4bac68d8e11c8011d504ad03d429ad SRA:SRR6213891 https://www.encodeproject.org/files/ENCFF803NZA/@@download/ENCFF803NZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF254TQA bam unfiltered alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF402HLR, ENCFF643CGH, ENCFF803NZA 6721483393 ENCODE Processing Pipeline 4841e638aa9af10a9f9cc2360d24d117 https://www.encodeproject.org/files/ENCFF254TQA/@@download/ENCFF254TQA.bam GRCh38 released ENCFF950DZO bam unfiltered alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF091COJ, ENCFF643CGH, ENCFF892KUR 8996048153 ENCODE Processing Pipeline 13cd83568e4aaf0e00153bc358cb9ec9 https://www.encodeproject.org/files/ENCFF950DZO/@@download/ENCFF950DZO.bam GRCh38 released ENCFF565AIC bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF402HLR, ENCFF643CGH, ENCFF803NZA 5685083770 ENCODE Processing Pipeline 474a7246b5d60695db48cf6bed21f8b8 https://www.encodeproject.org/files/ENCFF565AIC/@@download/ENCFF565AIC.bam GRCh38 released ENCFF540GWM bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF091COJ, ENCFF643CGH, ENCFF892KUR 7546459900 ENCODE Processing Pipeline 6fca1355cb3f023805d69c2f566e495e https://www.encodeproject.org/files/ENCFF540GWM/@@download/ENCFF540GWM.bam GRCh38 released ENCFF462SZT bigWig signal p-value ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF540GWM 1847151726 ENCODE Processing Pipeline f4448e136e7dd51cf8bc341318dd442a https://www.encodeproject.org/files/ENCFF462SZT/@@download/ENCFF462SZT.bigWig GRCh38 released ENCFF543EJN bigWig signal p-value ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF565AIC 1332700579 ENCODE Processing Pipeline f403b73a19fb27721d307eb8ee163182 https://www.encodeproject.org/files/ENCFF543EJN/@@download/ENCFF543EJN.bigWig GRCh38 released ENCFF269UKA bigWig signal p-value ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF540GWM, ENCFF565AIC 2214376922 ENCODE Processing Pipeline cb57edabb6791384a5be51216ff8effb https://www.encodeproject.org/files/ENCFF269UKA/@@download/ENCFF269UKA.bigWig GRCh38 released ENCFF945UKY bigWig fold change over control ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF540GWM 1914917514 ENCODE Processing Pipeline 11b42ea6f415c90fda9dc65254f9d207 https://www.encodeproject.org/files/ENCFF945UKY/@@download/ENCFF945UKY.bigWig GRCh38 released ENCFF982CZO bigWig fold change over control ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF565AIC 1276034633 ENCODE Processing Pipeline 5c3573ccc60860c4309dff8660150ddd https://www.encodeproject.org/files/ENCFF982CZO/@@download/ENCFF982CZO.bigWig GRCh38 released ENCFF834FDG bigWig fold change over control ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF540GWM, ENCFF565AIC 2358518147 ENCODE Processing Pipeline d49cee0dcd67974c2c8308bd40912def https://www.encodeproject.org/files/ENCFF834FDG/@@download/ENCFF834FDG.bigWig GRCh38 released ENCFF989EIF bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF540GWM 7061738 ENCODE Processing Pipeline 00bf6a65709051a96c8ca6be304d805c https://www.encodeproject.org/files/ENCFF989EIF/@@download/ENCFF989EIF.bed.gz GRCh38 released ENCFF585OFV bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF565AIC 6520238 ENCODE Processing Pipeline f0a78a7f46effd44306a50749ec94812 https://www.encodeproject.org/files/ENCFF585OFV/@@download/ENCFF585OFV.bed.gz GRCh38 released ENCFF251YZN bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF540GWM, ENCFF565AIC 7227614 ENCODE Processing Pipeline 9e26ed62cf439a59956678e00466dce3 https://www.encodeproject.org/files/ENCFF251YZN/@@download/ENCFF251YZN.bed.gz GRCh38 released ENCFF772LOV bigBed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF989EIF 13313091 ENCODE Processing Pipeline 82e083bc4c2040abd2344c4ceaa46e6a https://www.encodeproject.org/files/ENCFF772LOV/@@download/ENCFF772LOV.bigBed GRCh38 released ENCFF463WBQ bigBed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF585OFV 11158062 ENCODE Processing Pipeline 680fd615eae63b4cef2e948d5c69cb08 https://www.encodeproject.org/files/ENCFF463WBQ/@@download/ENCFF463WBQ.bigBed GRCh38 released ENCFF697PIP bigBed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF251YZN 13298214 ENCODE Processing Pipeline a4532c4bc683b103247bdbc3651406c0 https://www.encodeproject.org/files/ENCFF697PIP/@@download/ENCFF697PIP.bigBed GRCh38 released ENCFF743EQV bed narrowPeak conservative idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF251YZN, ENCFF419RSJ, ENCFF585OFV, ENCFF989EIF 291159 ENCODE Processing Pipeline 42aaf41f6f89e18d74dbe995df4667b2 https://www.encodeproject.org/files/ENCFF743EQV/@@download/ENCFF743EQV.bed.gz GRCh38 released ENCFF002JQU bigBed narrowPeak conservative idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF743EQV 621270 ENCODE Processing Pipeline a49c6c1d6f5143caa28b7244cd058e12 https://www.encodeproject.org/files/ENCFF002JQU/@@download/ENCFF002JQU.bigBed GRCh38 released ENCFF385WUL bed narrowPeak optimal idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF251YZN, ENCFF419RSJ, ENCFF585OFV, ENCFF989EIF 321450 ENCODE Processing Pipeline 1f6af43e5a7f3f90c759e58ddb5cd6f0 https://www.encodeproject.org/files/ENCFF385WUL/@@download/ENCFF385WUL.bed.gz GRCh38 released ENCFF924RID bigBed narrowPeak optimal idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF385WUL 664452 ENCODE Processing Pipeline 35c182c9eb1116904874af684aaaac7b https://www.encodeproject.org/files/ENCFF924RID/@@download/ENCFF924RID.bigBed GRCh38 released ENCFF186EYR bam unfiltered alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF402HLR, ENCFF803NZA, ENCFF807MUK 6709624097 ENCODE Processing Pipeline e8bdf24fd682857fc4dd3dd5ba578b96 https://www.encodeproject.org/files/ENCFF186EYR/@@download/ENCFF186EYR.bam hg19 released ENCFF807EAV bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF402HLR, ENCFF803NZA, ENCFF807MUK 5675882863 ENCODE Processing Pipeline 986b7b1a6b14953431c5e702ec1f53bc https://www.encodeproject.org/files/ENCFF807EAV/@@download/ENCFF807EAV.bam hg19 released ENCFF765SYH bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF091COJ, ENCFF807MUK, ENCFF892KUR 7537605040 ENCODE Processing Pipeline e2067878b573e585bc5d3ca1ee2f2048 https://www.encodeproject.org/files/ENCFF765SYH/@@download/ENCFF765SYH.bam hg19 released ENCFF156KBY bam unfiltered alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF091COJ, ENCFF807MUK, ENCFF892KUR 8982050910 ENCODE Processing Pipeline c71c000c1a65a2ec97421f9afe867a34 https://www.encodeproject.org/files/ENCFF156KBY/@@download/ENCFF156KBY.bam hg19 released ENCFF902RAQ bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH 7052623 ENCODE Processing Pipeline b8b98622b602dc19e76d0f6ecd5f7f22 https://www.encodeproject.org/files/ENCFF902RAQ/@@download/ENCFF902RAQ.bed.gz hg19 released ENCFF662AVB bed narrowPeak conservative idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF179ZRO, ENCFF625EBI, ENCFF902RAQ 287389 ENCODE Processing Pipeline 63c8cd945548ea495ac82d12df289cd7 https://www.encodeproject.org/files/ENCFF662AVB/@@download/ENCFF662AVB.bed.gz hg19 released ENCFF879VLB bed narrowPeak optimal idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF179ZRO, ENCFF625EBI, ENCFF902RAQ 318217 ENCODE Processing Pipeline 122ad4a31f037d52655f5c8faec47d31 https://www.encodeproject.org/files/ENCFF879VLB/@@download/ENCFF879VLB.bed.gz hg19 released ENCFF250GAA bigWig fold change over control ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH 1913444824 ENCODE Processing Pipeline 638aa9848d46c5efeba35577bd2d212d https://www.encodeproject.org/files/ENCFF250GAA/@@download/ENCFF250GAA.bigWig hg19 released ENCFF179ZRO bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF807EAV 6491482 ENCODE Processing Pipeline 627d32cbe0d4be7348cf21a001b0cb68 https://www.encodeproject.org/files/ENCFF179ZRO/@@download/ENCFF179ZRO.bed.gz hg19 released ENCFF965CAH bigBed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF625EBI 13279663 ENCODE Processing Pipeline d1a0318c1b1cffe19a63823925860fcd https://www.encodeproject.org/files/ENCFF965CAH/@@download/ENCFF965CAH.bigBed hg19 released ENCFF514BNE bigWig signal p-value ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH, ENCFF807EAV 2209378032 ENCODE Processing Pipeline c7fe96d6d433648feeb1e1b279cecaed https://www.encodeproject.org/files/ENCFF514BNE/@@download/ENCFF514BNE.bigWig hg19 released ENCFF027DSF bigWig fold change over control ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH, ENCFF807EAV 2351268063 ENCODE Processing Pipeline c19e551697894cbff85672a23c325380 https://www.encodeproject.org/files/ENCFF027DSF/@@download/ENCFF027DSF.bigWig hg19 released ENCFF576ZIK bigWig signal p-value ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH 1534312807 ENCODE Processing Pipeline bb8ec84b6931317167d2422a35770d36 https://www.encodeproject.org/files/ENCFF576ZIK/@@download/ENCFF576ZIK.bigWig hg19 released ENCFF320DFJ bigWig signal p-value ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF807EAV 1125850897 ENCODE Processing Pipeline 97f45bef8d09ee8eb2508e1cb162cb04 https://www.encodeproject.org/files/ENCFF320DFJ/@@download/ENCFF320DFJ.bigWig hg19 released ENCFF982AKS bigWig fold change over control ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF807EAV 1284789365 ENCODE Processing Pipeline 9ccda5bd95c1cf5185d2e85162b18922 https://www.encodeproject.org/files/ENCFF982AKS/@@download/ENCFF982AKS.bigWig hg19 released ENCFF788JXX bigBed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF179ZRO 11118828 ENCODE Processing Pipeline f7a37a5a38692662912db6372f60f0d7 https://www.encodeproject.org/files/ENCFF788JXX/@@download/ENCFF788JXX.bigBed hg19 released ENCFF146REV bigBed narrowPeak conservative idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF662AVB 612683 ENCODE Processing Pipeline cd9cd29786532915842212649194fb0f https://www.encodeproject.org/files/ENCFF146REV/@@download/ENCFF146REV.bigBed hg19 released ENCFF431DTC bigBed narrowPeak optimal idr thresholded peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF879VLB 656402 ENCODE Processing Pipeline cc9980da6e92258acfed69cff536ad70 https://www.encodeproject.org/files/ENCFF431DTC/@@download/ENCFF431DTC.bigBed hg19 released ENCFF625EBI bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH, ENCFF807EAV 7218940 ENCODE Processing Pipeline d345ed499d34158015c43f35d94316f6 https://www.encodeproject.org/files/ENCFF625EBI/@@download/ENCFF625EBI.bed.gz hg19 released ENCFF227JRP bigBed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF902RAQ 13292065 ENCODE Processing Pipeline ed811df4c986e5f33242967562b1d160 https://www.encodeproject.org/files/ENCFF227JRP/@@download/ENCFF227JRP.bigBed hg19 released ENCFF026OWV fastq reads ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 1 ENCFF454AFY 5926743153 Michael Snyder, Stanford d4096e44690d8599247571f516482eb9 SRA:SRR6212630 https://www.encodeproject.org/files/ENCFF026OWV/@@download/ENCFF026OWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF928OBE/ released NTR biosample ENCFF454AFY fastq reads ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 2 ENCFF026OWV 5965755821 Michael Snyder, Stanford f595241f43114017b716314eca848f43 SRA:SRR6212630 https://www.encodeproject.org/files/ENCFF454AFY/@@download/ENCFF454AFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF619MWU/ released NTR biosample ENCFF668JXE fastq reads ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 1 ENCFF059FPN 4506373560 Michael Snyder, Stanford f85546b6e2c7a4d41d1d7d1725c91bb5 SRA:SRR6212629 https://www.encodeproject.org/files/ENCFF668JXE/@@download/ENCFF668JXE.fastq.gz Illumina HiSeq 2000 /files/ENCFF007ATP/ released NTR biosample ENCFF059FPN fastq reads ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 2 ENCFF668JXE 4566790859 Michael Snyder, Stanford e610d10cd4d49d72c0e78c57bb178ed0 SRA:SRR6212629 https://www.encodeproject.org/files/ENCFF059FPN/@@download/ENCFF059FPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF056XEJ/ released NTR biosample ENCFF237TDN bam unfiltered alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 100 ENCFF026OWV, ENCFF454AFY, ENCFF643CGH 11330946725 ENCODE Processing Pipeline 26d1b60c26b1a9b4686c684d9b3946be https://www.encodeproject.org/files/ENCFF237TDN/@@download/ENCFF237TDN.bam GRCh38 released NTR biosample ENCFF395QIX bam unfiltered alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 100 ENCFF059FPN, ENCFF643CGH, ENCFF668JXE 9714351344 ENCODE Processing Pipeline 410b14f1829392ef239cee634eb7f1e0 https://www.encodeproject.org/files/ENCFF395QIX/@@download/ENCFF395QIX.bam GRCh38 released NTR biosample ENCFF316VFC bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 100 ENCFF059FPN, ENCFF643CGH, ENCFF668JXE 7979487574 ENCODE Processing Pipeline 27ec5481ad1f819fa5788d96415d36df https://www.encodeproject.org/files/ENCFF316VFC/@@download/ENCFF316VFC.bam GRCh38 released NTR biosample ENCFF381IZD bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 100 ENCFF026OWV, ENCFF454AFY, ENCFF643CGH 8818318160 ENCODE Processing Pipeline e7ce43d1c9658b3367564f4c34d8045b https://www.encodeproject.org/files/ENCFF381IZD/@@download/ENCFF381IZD.bam GRCh38 released NTR biosample ENCFF704DUW bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 100 ENCFF059FPN, ENCFF668JXE, ENCFF807MUK 7968240324 ENCODE Processing Pipeline a5fec1b8802a9e169101187f6b98ec67 https://www.encodeproject.org/files/ENCFF704DUW/@@download/ENCFF704DUW.bam hg19 released NTR biosample ENCFF255DFX bam unfiltered alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 100 ENCFF059FPN, ENCFF668JXE, ENCFF807MUK 9692060883 ENCODE Processing Pipeline 1d301de330a9ec3db600a6181880bb45 https://www.encodeproject.org/files/ENCFF255DFX/@@download/ENCFF255DFX.bam hg19 released NTR biosample ENCFF207VWX bam unfiltered alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 100 ENCFF026OWV, ENCFF454AFY, ENCFF807MUK 11326832380 ENCODE Processing Pipeline fc69e04066743075e8f486cd5c8e9893 https://www.encodeproject.org/files/ENCFF207VWX/@@download/ENCFF207VWX.bam hg19 released NTR biosample ENCFF366VQS bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 100 ENCFF026OWV, ENCFF454AFY, ENCFF807MUK 8806005407 ENCODE Processing Pipeline 4ab52c4f5df203b29b569220690f853e https://www.encodeproject.org/files/ENCFF366VQS/@@download/ENCFF366VQS.bam hg19 released NTR biosample ENCFF371LLQ bigWig signal p-value ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF244UGL, ENCFF316VFC, ENCFF980IJT 1507625438 ENCODE Processing Pipeline ab600b995349cd53af8bded65a6d024f https://www.encodeproject.org/files/ENCFF371LLQ/@@download/ENCFF371LLQ.bigWig GRCh38 released NTR biosample ENCFF841QWX bigWig signal p-value ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF244UGL, ENCFF381IZD, ENCFF980IJT 1622705911 ENCODE Processing Pipeline 2b83237e2d29c355fe6c6b2c8be6dc78 https://www.encodeproject.org/files/ENCFF841QWX/@@download/ENCFF841QWX.bigWig GRCh38 released NTR biosample ENCFF647QRJ bigWig fold change over control ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 1842321453 ENCODE Processing Pipeline 0683b90ca3b3e360fd2e1c859547c067 https://www.encodeproject.org/files/ENCFF647QRJ/@@download/ENCFF647QRJ.bigWig hg19 released NTR biosample ENCFF520HJA bigWig fold change over control ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF244UGL, ENCFF316VFC, ENCFF980IJT 1839284484 ENCODE Processing Pipeline ec5cd414c4bb024036eb55a6ed6ade2e https://www.encodeproject.org/files/ENCFF520HJA/@@download/ENCFF520HJA.bigWig GRCh38 released NTR biosample ENCFF542ZFP bigWig signal p-value ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 1537136568 ENCODE Processing Pipeline fee4370575cd3755907f49e8bdae7602 https://www.encodeproject.org/files/ENCFF542ZFP/@@download/ENCFF542ZFP.bigWig hg19 released NTR biosample ENCFF963HJS bigWig signal p-value ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF366VQS, ENCFF801WHL, ENCFF923EBC 1624235087 ENCODE Processing Pipeline a28baa318afa963b82091512982648d4 https://www.encodeproject.org/files/ENCFF963HJS/@@download/ENCFF963HJS.bigWig hg19 released NTR biosample ENCFF655SGZ bigWig signal p-value ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF366VQS, ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 1809441804 ENCODE Processing Pipeline f2a6f8795bb74d1aa148b61878293f13 https://www.encodeproject.org/files/ENCFF655SGZ/@@download/ENCFF655SGZ.bigWig hg19 released NTR biosample ENCFF566LET bigWig fold change over control ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF366VQS, ENCFF801WHL, ENCFF923EBC 1777712531 ENCODE Processing Pipeline 85415166bc1c640741b939cc196963dc https://www.encodeproject.org/files/ENCFF566LET/@@download/ENCFF566LET.bigWig hg19 released NTR biosample ENCFF057QRC bigWig signal p-value ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF244UGL, ENCFF316VFC, ENCFF381IZD, ENCFF980IJT 1772916748 ENCODE Processing Pipeline 2ae83d12ea542263d9be7574f471e5ff https://www.encodeproject.org/files/ENCFF057QRC/@@download/ENCFF057QRC.bigWig GRCh38 released NTR biosample ENCFF715QFH bigWig fold change over control ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF244UGL, ENCFF381IZD, ENCFF980IJT 1779540174 ENCODE Processing Pipeline b2e34caf0e9454be1cae117137e92bdc https://www.encodeproject.org/files/ENCFF715QFH/@@download/ENCFF715QFH.bigWig GRCh38 released NTR biosample ENCFF232OOS bigWig fold change over control ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF366VQS, ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 2581311552 ENCODE Processing Pipeline 86c8c969349fbed3b77363899eddab2d https://www.encodeproject.org/files/ENCFF232OOS/@@download/ENCFF232OOS.bigWig hg19 released NTR biosample ENCFF947AXY bigWig fold change over control ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF244UGL, ENCFF316VFC, ENCFF381IZD, ENCFF980IJT 2582993583 ENCODE Processing Pipeline f4b61077603a55c34b911358e7f4a417 https://www.encodeproject.org/files/ENCFF947AXY/@@download/ENCFF947AXY.bigWig GRCh38 released NTR biosample ENCFF826ULZ bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF366VQS, ENCFF801WHL, ENCFF923EBC 7198175 ENCODE Processing Pipeline 4c617dbf8ab0957b2b8643b5502c09f3 https://www.encodeproject.org/files/ENCFF826ULZ/@@download/ENCFF826ULZ.bed.gz hg19 released NTR biosample ENCFF597NIC bigBed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF826ULZ 12858957 ENCODE Processing Pipeline 314d4cc3692fc5cdcf770b124d4ea0b1 https://www.encodeproject.org/files/ENCFF597NIC/@@download/ENCFF597NIC.bigBed hg19 released NTR biosample ENCFF466BSV bigBed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF647SSO 13162156 ENCODE Processing Pipeline c899ed5ffc3eb82bc3099a1593affe7f https://www.encodeproject.org/files/ENCFF466BSV/@@download/ENCFF466BSV.bigBed hg19 released NTR biosample ENCFF580SOT bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF244UGL, ENCFF316VFC, ENCFF980IJT 7293492 ENCODE Processing Pipeline 60ed15224d78d2436e0dc0eb47b3387e https://www.encodeproject.org/files/ENCFF580SOT/@@download/ENCFF580SOT.bed.gz GRCh38 released NTR biosample ENCFF998YLT bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 7288711 ENCODE Processing Pipeline 977a1ece93a9c9260888b2f6670b0017 https://www.encodeproject.org/files/ENCFF998YLT/@@download/ENCFF998YLT.bed.gz hg19 released NTR biosample ENCFF647SSO bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF366VQS, ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 7372950 ENCODE Processing Pipeline 4281a88f7e6bf1afa99848922e3ba0b4 https://www.encodeproject.org/files/ENCFF647SSO/@@download/ENCFF647SSO.bed.gz hg19 released NTR biosample ENCFF701SRK bigBed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF998YLT 13159522 ENCODE Processing Pipeline ab1d3b6a51d9f489eafe74756cb5d7f6 https://www.encodeproject.org/files/ENCFF701SRK/@@download/ENCFF701SRK.bigBed hg19 released NTR biosample ENCFF375LIN bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF244UGL, ENCFF316VFC, ENCFF381IZD, ENCFF980IJT 7386084 ENCODE Processing Pipeline 718cd7d64072f49b0e978f3ff6d19ec1 https://www.encodeproject.org/files/ENCFF375LIN/@@download/ENCFF375LIN.bed.gz GRCh38 released NTR biosample ENCFF666SCD bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF244UGL, ENCFF381IZD, ENCFF980IJT 7234784 ENCODE Processing Pipeline e6a8a727fe16875b72af1e86a970643a https://www.encodeproject.org/files/ENCFF666SCD/@@download/ENCFF666SCD.bed.gz GRCh38 released NTR biosample ENCFF971ZOB bed narrowPeak conservative idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF647SSO, ENCFF826ULZ, ENCFF998YLT 203168 ENCODE Processing Pipeline a4816f184c94454f0475021c413abe68 https://www.encodeproject.org/files/ENCFF971ZOB/@@download/ENCFF971ZOB.bed.gz hg19 released NTR biosample ENCFF350PIR bigBed narrowPeak optimal idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF842WEF 849541 ENCODE Processing Pipeline b034c7481719a252a5c9ca789310c194 https://www.encodeproject.org/files/ENCFF350PIR/@@download/ENCFF350PIR.bigBed hg19 released NTR biosample ENCFF470WVN bigBed narrowPeak conservative idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF971ZOB 646227 ENCODE Processing Pipeline 3d74008727d59e1f88ecf03c8c747e51 https://www.encodeproject.org/files/ENCFF470WVN/@@download/ENCFF470WVN.bigBed hg19 released NTR biosample ENCFF398UBY bigBed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF375LIN 13187241 ENCODE Processing Pipeline 68466c3bbcd04aedb1a82c3161440cf5 https://www.encodeproject.org/files/ENCFF398UBY/@@download/ENCFF398UBY.bigBed GRCh38 released NTR biosample ENCFF842WEF bed narrowPeak optimal idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF647SSO, ENCFF826ULZ, ENCFF998YLT 347370 ENCODE Processing Pipeline 6f271660d54a0c592fbb46ce8ac25719 https://www.encodeproject.org/files/ENCFF842WEF/@@download/ENCFF842WEF.bed.gz hg19 released NTR biosample ENCFF586XTX bed narrowPeak conservative idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF375LIN, ENCFF419RSJ, ENCFF580SOT, ENCFF666SCD 206862 ENCODE Processing Pipeline b83a5e87910a4c107a48b712c098efa9 https://www.encodeproject.org/files/ENCFF586XTX/@@download/ENCFF586XTX.bed.gz GRCh38 released NTR biosample ENCFF025SUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF586XTX 655878 ENCODE Processing Pipeline 5427834d5e066b1163a28bc1ed576ea8 https://www.encodeproject.org/files/ENCFF025SUZ/@@download/ENCFF025SUZ.bigBed GRCh38 released NTR biosample ENCFF961BXS bigBed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF580SOT 13181574 ENCODE Processing Pipeline d3272d31c11d060eec48d74177508bc2 https://www.encodeproject.org/files/ENCFF961BXS/@@download/ENCFF961BXS.bigBed GRCh38 released NTR biosample ENCFF486EAR bigBed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF666SCD 12904979 ENCODE Processing Pipeline 9ae9a70acba7895429d5f3a0e7f6c245 https://www.encodeproject.org/files/ENCFF486EAR/@@download/ENCFF486EAR.bigBed GRCh38 released NTR biosample ENCFF856AUX bed narrowPeak optimal idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF375LIN, ENCFF419RSJ, ENCFF580SOT, ENCFF666SCD 353273 ENCODE Processing Pipeline d9b5aa0719e0b7366e12225ba6d6d839 https://www.encodeproject.org/files/ENCFF856AUX/@@download/ENCFF856AUX.bed.gz GRCh38 released NTR biosample ENCFF739KRG bigBed narrowPeak optimal idr thresholded peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF856AUX 863411 ENCODE Processing Pipeline 4fb865532026a5f8cc71c3afc4c9e2b4 https://www.encodeproject.org/files/ENCFF739KRG/@@download/ENCFF739KRG.bigBed GRCh38 released NTR biosample ENCFF862ENY fastq reads ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF525FCD 3699798487 Michael Snyder, Stanford dbb3d8a9ac4edd155dcd595a76827f52 SRA:SRR6212962 https://www.encodeproject.org/files/ENCFF862ENY/@@download/ENCFF862ENY.fastq.gz Illumina HiSeq 2000 /files/ENCFF888ISZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF322UDQ fastq reads ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF212WVZ 5664944566 Michael Snyder, Stanford b86b2f91e7aeab057ee7b8033c56dbfc SRA:SRR6212961 https://www.encodeproject.org/files/ENCFF322UDQ/@@download/ENCFF322UDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF541WRS/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF525FCD fastq reads ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF862ENY 3385163427 Michael Snyder, Stanford 3eda8858e9cc50908b115de7b1d9f19c SRA:SRR6212962 https://www.encodeproject.org/files/ENCFF525FCD/@@download/ENCFF525FCD.fastq.gz Illumina HiSeq 2000 /files/ENCFF837GYP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF212WVZ fastq reads ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF322UDQ 5269182712 Michael Snyder, Stanford 330b21de74757c9ed546db2b1fe3efb5 SRA:SRR6212961 https://www.encodeproject.org/files/ENCFF212WVZ/@@download/ENCFF212WVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF842AAT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF585IVG bam unfiltered alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF525FCD, ENCFF807MUK, ENCFF862ENY 7129504143 ENCODE Processing Pipeline e60a3c01cc65f77b170122d912527f77 https://www.encodeproject.org/files/ENCFF585IVG/@@download/ENCFF585IVG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF601MGR bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF525FCD, ENCFF807MUK, ENCFF862ENY 4019641448 ENCODE Processing Pipeline a18ef487a337c248b37ad5088ec91b46 https://www.encodeproject.org/files/ENCFF601MGR/@@download/ENCFF601MGR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF084LIT bam unfiltered alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 100 ENCFF212WVZ, ENCFF322UDQ, ENCFF643CGH 10610695728 ENCODE Processing Pipeline eab8cc0da1ae3e3afbea981bec9dd9f5 https://www.encodeproject.org/files/ENCFF084LIT/@@download/ENCFF084LIT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF146XQG bam unfiltered alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 100 ENCFF212WVZ, ENCFF322UDQ, ENCFF807MUK 10610618014 ENCODE Processing Pipeline 32bbbcfa99f42dbcffa97868ea5c5b90 https://www.encodeproject.org/files/ENCFF146XQG/@@download/ENCFF146XQG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF082TAD bam unfiltered alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF525FCD, ENCFF643CGH, ENCFF862ENY 7132623019 ENCODE Processing Pipeline 15f279e75f14cd4d8b66b685bcabade7 https://www.encodeproject.org/files/ENCFF082TAD/@@download/ENCFF082TAD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF502IBE bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 100 ENCFF212WVZ, ENCFF322UDQ, ENCFF807MUK 5453650450 ENCODE Processing Pipeline 707a1a309349ae9010a4b91850e09e4d https://www.encodeproject.org/files/ENCFF502IBE/@@download/ENCFF502IBE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF951XSM bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF525FCD, ENCFF643CGH, ENCFF862ENY 4024272863 ENCODE Processing Pipeline cf697d4de7d37fc7858b24a19cb1275a https://www.encodeproject.org/files/ENCFF951XSM/@@download/ENCFF951XSM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF608KCO bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 100 ENCFF212WVZ, ENCFF322UDQ, ENCFF643CGH 5459961366 ENCODE Processing Pipeline 0ca966bf42906127427b00ef708bc0b2 https://www.encodeproject.org/files/ENCFF608KCO/@@download/ENCFF608KCO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF016QJH bigWig signal p-value ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF711IHQ, ENCFF951XSM 1107973269 ENCODE Processing Pipeline 2e9d37d6bd2e8419e628f6c146a221ed https://www.encodeproject.org/files/ENCFF016QJH/@@download/ENCFF016QJH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF891ZBT bigWig signal p-value ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF502IBE, ENCFF618SCO 1092793749 ENCODE Processing Pipeline 0c569ddb694296ede6059d4d8cdad1e3 https://www.encodeproject.org/files/ENCFF891ZBT/@@download/ENCFF891ZBT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF098DGZ bigWig signal p-value ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF213AZI, ENCFF608KCO 1147114129 ENCODE Processing Pipeline 24c0599b41307b234806ec3277830299 https://www.encodeproject.org/files/ENCFF098DGZ/@@download/ENCFF098DGZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF179GRG bigWig signal p-value ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF213AZI, ENCFF608KCO, ENCFF711IHQ, ENCFF951XSM 1883175228 ENCODE Processing Pipeline c31224fecadd8c01ff538c1eb62d505d https://www.encodeproject.org/files/ENCFF179GRG/@@download/ENCFF179GRG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF563NMM bigWig signal p-value ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF574AVO, ENCFF601MGR 1030533288 ENCODE Processing Pipeline 2a79df4e7463c6381fc5ec5c7512baed https://www.encodeproject.org/files/ENCFF563NMM/@@download/ENCFF563NMM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF601VWN bigWig signal p-value ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF502IBE, ENCFF574AVO, ENCFF601MGR, ENCFF618SCO 2028749318 ENCODE Processing Pipeline 5723d8d249374d3ba35e83fc07a5b342 https://www.encodeproject.org/files/ENCFF601VWN/@@download/ENCFF601VWN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF345AIY bigWig fold change over control ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF574AVO, ENCFF601MGR 1051598499 ENCODE Processing Pipeline efaa82fcb4892848498eed0a8b5e14ce https://www.encodeproject.org/files/ENCFF345AIY/@@download/ENCFF345AIY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF466PHN bigWig fold change over control ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF711IHQ, ENCFF951XSM 1055761281 ENCODE Processing Pipeline 1e76c9f60b9c6f0a5500dc69fedf7e38 https://www.encodeproject.org/files/ENCFF466PHN/@@download/ENCFF466PHN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF412CKL bigWig fold change over control ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF502IBE, ENCFF618SCO 1317102200 ENCODE Processing Pipeline 146d076d8ab0283507f90e6587bea841 https://www.encodeproject.org/files/ENCFF412CKL/@@download/ENCFF412CKL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF735IFF bigWig fold change over control ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF213AZI, ENCFF608KCO 1320607785 ENCODE Processing Pipeline e57b392299390a5c29d824202859037f https://www.encodeproject.org/files/ENCFF735IFF/@@download/ENCFF735IFF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF130KOV bigBed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF887AQJ 13173103 ENCODE Processing Pipeline c1ae55dca81459e712395e1030691568 https://www.encodeproject.org/files/ENCFF130KOV/@@download/ENCFF130KOV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF573GPU bigWig fold change over control ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF213AZI, ENCFF608KCO, ENCFF711IHQ, ENCFF951XSM 2163664392 ENCODE Processing Pipeline 314c6dff38bb88e85b8b183a18811cc0 https://www.encodeproject.org/files/ENCFF573GPU/@@download/ENCFF573GPU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF344AQO bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF502IBE, ENCFF574AVO, ENCFF601MGR, ENCFF618SCO 7012731 ENCODE Processing Pipeline bf0732d2339558488eee16e8953e76a6 https://www.encodeproject.org/files/ENCFF344AQO/@@download/ENCFF344AQO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF887AQJ bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF711IHQ, ENCFF951XSM 6654469 ENCODE Processing Pipeline 08857404cf857b7fe7a37be883b24d24 https://www.encodeproject.org/files/ENCFF887AQJ/@@download/ENCFF887AQJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF187VZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF698WAX 3471175 ENCODE Processing Pipeline d2c5af584f483b838bb2ef52d04b076e https://www.encodeproject.org/files/ENCFF187VZQ/@@download/ENCFF187VZQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF762QIH bigBed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF305CKS 13396460 ENCODE Processing Pipeline b2c92f0bc4e253f10044669bf17fd7ed https://www.encodeproject.org/files/ENCFF762QIH/@@download/ENCFF762QIH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF276RMO bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF502IBE, ENCFF618SCO 6744690 ENCODE Processing Pipeline f0b3cb8c1493d48a88cf0b30b72a08ff https://www.encodeproject.org/files/ENCFF276RMO/@@download/ENCFF276RMO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF324DIB bigBed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF759LYG 13166626 ENCODE Processing Pipeline 5ee7a4680aacc6f4ed46eb02e8f28fb5 https://www.encodeproject.org/files/ENCFF324DIB/@@download/ENCFF324DIB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF698WAX bed narrowPeak optimal idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF276RMO, ENCFF344AQO, ENCFF759LYG 1874386 ENCODE Processing Pipeline 91702d6a98f8d9cd05674e5be55bb360 https://www.encodeproject.org/files/ENCFF698WAX/@@download/ENCFF698WAX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF011NRT bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF213AZI, ENCFF608KCO, ENCFF711IHQ, ENCFF951XSM 7041885 ENCODE Processing Pipeline c5b2092078bce6d5f046fb846ef20154 https://www.encodeproject.org/files/ENCFF011NRT/@@download/ENCFF011NRT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF355SIG bigWig fold change over control ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF502IBE, ENCFF574AVO, ENCFF601MGR, ENCFF618SCO 2159094542 ENCODE Processing Pipeline 6e9e8fe12aa920e8e5d888d07c79e0dc https://www.encodeproject.org/files/ENCFF355SIG/@@download/ENCFF355SIG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF759LYG bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF574AVO, ENCFF601MGR 6658556 ENCODE Processing Pipeline 6bf4ae8050845b3e67f3a7059e159a6d https://www.encodeproject.org/files/ENCFF759LYG/@@download/ENCFF759LYG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF116NKY bigBed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF276RMO 13266750 ENCODE Processing Pipeline 9b4950eb8a8525de37c2fa9ce080ed47 https://www.encodeproject.org/files/ENCFF116NKY/@@download/ENCFF116NKY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF316CLA bigBed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF344AQO 13070901 ENCODE Processing Pipeline 6fc6b33c5dbe9810f41da7581608c183 https://www.encodeproject.org/files/ENCFF316CLA/@@download/ENCFF316CLA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF234SFH bed narrowPeak conservative idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF276RMO, ENCFF344AQO, ENCFF759LYG 1704873 ENCODE Processing Pipeline a5e299f562347ee3a73469e523a3e13e https://www.encodeproject.org/files/ENCFF234SFH/@@download/ENCFF234SFH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF298NFB bigBed narrowPeak conservative idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF234SFH 3154530 ENCODE Processing Pipeline a7acccab6be3fcdbe3b4ce6d1a9cae54 https://www.encodeproject.org/files/ENCFF298NFB/@@download/ENCFF298NFB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF305CKS bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF213AZI, ENCFF608KCO 6834185 ENCODE Processing Pipeline 96429b0c3a5a882c96448ad14d8da20f https://www.encodeproject.org/files/ENCFF305CKS/@@download/ENCFF305CKS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF184IXX bigBed narrowPeak conservative idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF734LKN 3175626 ENCODE Processing Pipeline d64f170713d2d52d012502fee818782d https://www.encodeproject.org/files/ENCFF184IXX/@@download/ENCFF184IXX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF505MPN bigBed narrowPeak optimal idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF712LFQ 3484861 ENCODE Processing Pipeline 65cddd6b3a40cc8cbeb5d168f8d81b06 https://www.encodeproject.org/files/ENCFF505MPN/@@download/ENCFF505MPN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF136SUC bigBed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF011NRT 13109561 ENCODE Processing Pipeline 58d79c0c61c88f75d7104f6554459dd2 https://www.encodeproject.org/files/ENCFF136SUC/@@download/ENCFF136SUC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF734LKN bed narrowPeak conservative idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF011NRT, ENCFF305CKS, ENCFF419RSJ, ENCFF887AQJ 1716048 ENCODE Processing Pipeline a30feeef62d4f60246a8e9764ad8e47c https://www.encodeproject.org/files/ENCFF734LKN/@@download/ENCFF734LKN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF712LFQ bed narrowPeak optimal idr thresholded peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF011NRT, ENCFF305CKS, ENCFF419RSJ, ENCFF887AQJ 1879680 ENCODE Processing Pipeline 687dcb39c1b32f30548bd57a2db9752e https://www.encodeproject.org/files/ENCFF712LFQ/@@download/ENCFF712LFQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF840RUR fastq reads ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF771ONE 2564326423 Michael Snyder, Stanford cf12dde2ccac94f51e8b8c49e5bf6062 SRA:SRR6213676 https://www.encodeproject.org/files/ENCFF840RUR/@@download/ENCFF840RUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF899JCP fastq reads ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF722QNA 2971520552 Michael Snyder, Stanford ba2ab07c80de424f287b18759d79e57e SRA:SRR6213677 https://www.encodeproject.org/files/ENCFF899JCP/@@download/ENCFF899JCP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF722QNA fastq reads ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF899JCP 2987475058 Michael Snyder, Stanford 61d6375aadd3b9ed2d21acdf475986cf SRA:SRR6213677 https://www.encodeproject.org/files/ENCFF722QNA/@@download/ENCFF722QNA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF771ONE fastq reads ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF840RUR 2549575317 Michael Snyder, Stanford 6c2019fd11f6645e8986b676ccc1344c SRA:SRR6213676 https://www.encodeproject.org/files/ENCFF771ONE/@@download/ENCFF771ONE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF504RBI bam unfiltered alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF643CGH, ENCFF722QNA, ENCFF899JCP 6540157838 ENCODE Processing Pipeline 88240d53b0a6ba4a1b95cba21b0ce85b https://www.encodeproject.org/files/ENCFF504RBI/@@download/ENCFF504RBI.bam GRCh38 released borderline replicate concordance ENCFF188HPV bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF643CGH, ENCFF722QNA, ENCFF899JCP 5569845124 ENCODE Processing Pipeline 2d75bb215c6e323731fd7cd77cf68aab https://www.encodeproject.org/files/ENCFF188HPV/@@download/ENCFF188HPV.bam GRCh38 released borderline replicate concordance ENCFF422VCP bam unfiltered alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF643CGH, ENCFF771ONE, ENCFF840RUR 5664833103 ENCODE Processing Pipeline 96b1c712f35b315fc9ae62b49c3d0b87 https://www.encodeproject.org/files/ENCFF422VCP/@@download/ENCFF422VCP.bam GRCh38 released borderline replicate concordance ENCFF542LVJ bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF643CGH, ENCFF771ONE, ENCFF840RUR 4774729465 ENCODE Processing Pipeline 99dcd1557cb83f0fcdebdcdf2ee1e365 https://www.encodeproject.org/files/ENCFF542LVJ/@@download/ENCFF542LVJ.bam GRCh38 released borderline replicate concordance ENCFF442AWF bigWig signal p-value ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF542LVJ 1114479617 ENCODE Processing Pipeline 9c8bad0190fb350909403a7b13f038a8 https://www.encodeproject.org/files/ENCFF442AWF/@@download/ENCFF442AWF.bigWig GRCh38 released borderline replicate concordance ENCFF549SGK bigWig signal p-value ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF188HPV, ENCFF291AFY 1257072961 ENCODE Processing Pipeline def2624f036136b5a771061563593fb9 https://www.encodeproject.org/files/ENCFF549SGK/@@download/ENCFF549SGK.bigWig GRCh38 released borderline replicate concordance ENCFF653BOG bigWig signal p-value ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF188HPV, ENCFF291AFY, ENCFF426RDP, ENCFF542LVJ 1668687619 ENCODE Processing Pipeline eda8a3557b09373993b5cfaee04a201e https://www.encodeproject.org/files/ENCFF653BOG/@@download/ENCFF653BOG.bigWig GRCh38 released borderline replicate concordance ENCFF895QHP bigWig fold change over control ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF542LVJ 1097349447 ENCODE Processing Pipeline c13127dab53f7477e30db2c7fce31d24 https://www.encodeproject.org/files/ENCFF895QHP/@@download/ENCFF895QHP.bigWig GRCh38 released borderline replicate concordance ENCFF478AAF bigWig fold change over control ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF188HPV, ENCFF291AFY 1237097688 ENCODE Processing Pipeline bd6cd3ea5b4b9ff62eb0e39e357a2617 https://www.encodeproject.org/files/ENCFF478AAF/@@download/ENCFF478AAF.bigWig GRCh38 released borderline replicate concordance ENCFF265ADQ bigWig fold change over control ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF188HPV, ENCFF291AFY, ENCFF426RDP, ENCFF542LVJ 2097946556 ENCODE Processing Pipeline ec5797903da525fa1f00c98905ebb3ce https://www.encodeproject.org/files/ENCFF265ADQ/@@download/ENCFF265ADQ.bigWig GRCh38 released borderline replicate concordance ENCFF318YZC bigBed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF791ADU 11169235 ENCODE Processing Pipeline 5be69f80eeb94951e8103512ed76e0e9 https://www.encodeproject.org/files/ENCFF318YZC/@@download/ENCFF318YZC.bigBed GRCh38 released borderline replicate concordance ENCFF910GIE bigBed narrowPeak optimal idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF510UNI 221971 ENCODE Processing Pipeline 6300db0435032020adbbc1acc300ecec https://www.encodeproject.org/files/ENCFF910GIE/@@download/ENCFF910GIE.bigBed GRCh38 released borderline replicate concordance ENCFF144YNH bigBed narrowPeak conservative idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF543JCS 143053 ENCODE Processing Pipeline a54063dec22052c1c85f61d8fbe3276e https://www.encodeproject.org/files/ENCFF144YNH/@@download/ENCFF144YNH.bigBed GRCh38 released borderline replicate concordance ENCFF510UNI bed narrowPeak optimal idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF512JJS, ENCFF791ADU, ENCFF959OQS 91653 ENCODE Processing Pipeline 6c2556d48248a2e94b803694319b7f19 https://www.encodeproject.org/files/ENCFF510UNI/@@download/ENCFF510UNI.bed.gz GRCh38 released borderline replicate concordance ENCFF512JJS bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF188HPV, ENCFF291AFY, ENCFF426RDP, ENCFF542LVJ 7052441 ENCODE Processing Pipeline 4dab15dba371edbe57c023c7d517454b https://www.encodeproject.org/files/ENCFF512JJS/@@download/ENCFF512JJS.bed.gz GRCh38 released borderline replicate concordance ENCFF462UEK bigBed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF959OQS 11183093 ENCODE Processing Pipeline dbf2c22583c43ef0a5349d1c3932109c https://www.encodeproject.org/files/ENCFF462UEK/@@download/ENCFF462UEK.bigBed GRCh38 released borderline replicate concordance ENCFF308EAF bigBed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF512JJS 11174028 ENCODE Processing Pipeline 6b14fbd42c209b21724cc6abd9509c29 https://www.encodeproject.org/files/ENCFF308EAF/@@download/ENCFF308EAF.bigBed GRCh38 released borderline replicate concordance ENCFF791ADU bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF426RDP, ENCFF542LVJ 5897329 ENCODE Processing Pipeline 0c66c9424d1efdf403f8714f39cd1bb7 https://www.encodeproject.org/files/ENCFF791ADU/@@download/ENCFF791ADU.bed.gz GRCh38 released borderline replicate concordance ENCFF959OQS bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF188HPV, ENCFF291AFY 6101582 ENCODE Processing Pipeline 18a6a80efda9ca8efebe3afd2c80cf7e https://www.encodeproject.org/files/ENCFF959OQS/@@download/ENCFF959OQS.bed.gz GRCh38 released borderline replicate concordance ENCFF543JCS bed narrowPeak conservative idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF512JJS, ENCFF791ADU, ENCFF959OQS 43371 ENCODE Processing Pipeline 0ab53c580b30ab1d6d502033dc77b6af https://www.encodeproject.org/files/ENCFF543JCS/@@download/ENCFF543JCS.bed.gz GRCh38 released borderline replicate concordance ENCFF886LST bam unfiltered alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF722QNA, ENCFF807MUK, ENCFF899JCP 6527888204 ENCODE Processing Pipeline ac6bbff883d7de04226a669aed002635 https://www.encodeproject.org/files/ENCFF886LST/@@download/ENCFF886LST.bam hg19 released borderline replicate concordance ENCFF440NDJ bam unfiltered alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF771ONE, ENCFF807MUK, ENCFF840RUR 5654609623 ENCODE Processing Pipeline 0a7f063a7cf17bfb89252394da846f97 https://www.encodeproject.org/files/ENCFF440NDJ/@@download/ENCFF440NDJ.bam hg19 released borderline replicate concordance ENCFF122TOW bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF771ONE, ENCFF807MUK, ENCFF840RUR 4767089912 ENCODE Processing Pipeline 079503a71f7e549967a5c5b3f9c9b819 https://www.encodeproject.org/files/ENCFF122TOW/@@download/ENCFF122TOW.bam hg19 released borderline replicate concordance ENCFF245NUX bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF722QNA, ENCFF807MUK, ENCFF899JCP 5560187940 ENCODE Processing Pipeline b426f1f68681797cad95caab71d79c73 https://www.encodeproject.org/files/ENCFF245NUX/@@download/ENCFF245NUX.bam hg19 released borderline replicate concordance ENCFF796ZWU bigWig signal p-value ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF122TOW, ENCFF583FAG 879722247 ENCODE Processing Pipeline b404a64cffc59254ec2795300415adf7 https://www.encodeproject.org/files/ENCFF796ZWU/@@download/ENCFF796ZWU.bigWig hg19 released borderline replicate concordance ENCFF557ORQ bigWig signal p-value ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF245NUX 1075399778 ENCODE Processing Pipeline c2817074cfc14fab55bb2a548d3ae1db https://www.encodeproject.org/files/ENCFF557ORQ/@@download/ENCFF557ORQ.bigWig hg19 released borderline replicate concordance ENCFF822VYR bigWig fold change over control ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF245NUX 1246738485 ENCODE Processing Pipeline 7770e36b28ce52b8f6ee5abf4d02866e https://www.encodeproject.org/files/ENCFF822VYR/@@download/ENCFF822VYR.bigWig hg19 released borderline replicate concordance ENCFF727JKS bigWig fold change over control ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF122TOW, ENCFF245NUX, ENCFF583FAG 2118012634 ENCODE Processing Pipeline d9e71ba2588d8aa3873ac968aa391121 https://www.encodeproject.org/files/ENCFF727JKS/@@download/ENCFF727JKS.bigWig hg19 released borderline replicate concordance ENCFF303QMJ bigBed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF568PRH 11160318 ENCODE Processing Pipeline 1f057a93ac4e3d233623303adf64d4f6 https://www.encodeproject.org/files/ENCFF303QMJ/@@download/ENCFF303QMJ.bigBed hg19 released borderline replicate concordance ENCFF844HOQ bigWig signal p-value ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF122TOW, ENCFF245NUX, ENCFF583FAG 1878744196 ENCODE Processing Pipeline 8cde61497cbb50e76b612a3ce28e7c01 https://www.encodeproject.org/files/ENCFF844HOQ/@@download/ENCFF844HOQ.bigWig hg19 released borderline replicate concordance ENCFF568PRH bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF122TOW, ENCFF583FAG 5872686 ENCODE Processing Pipeline 72c7583248caf8a4682451459800bdef https://www.encodeproject.org/files/ENCFF568PRH/@@download/ENCFF568PRH.bed.gz hg19 released borderline replicate concordance ENCFF307HAT bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF122TOW, ENCFF245NUX, ENCFF583FAG 7037405 ENCODE Processing Pipeline 6593a3e74ffa611e5df448c17297bd59 https://www.encodeproject.org/files/ENCFF307HAT/@@download/ENCFF307HAT.bed.gz hg19 released borderline replicate concordance ENCFF033ZMB bed narrowPeak conservative idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF307HAT, ENCFF568PRH, ENCFF751KOC 42023 ENCODE Processing Pipeline e1e6444335cc3e75e864522f68bf9677 https://www.encodeproject.org/files/ENCFF033ZMB/@@download/ENCFF033ZMB.bed.gz hg19 released borderline replicate concordance ENCFF925RZY bigBed narrowPeak optimal idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF821FWZ 211665 ENCODE Processing Pipeline 31055fe89d5b7fc1da67cc383e30a85f https://www.encodeproject.org/files/ENCFF925RZY/@@download/ENCFF925RZY.bigBed hg19 released borderline replicate concordance ENCFF175NXK bigWig fold change over control ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF122TOW, ENCFF583FAG 1092435287 ENCODE Processing Pipeline 63e19078f98d2442dbb1ce5b4c7ec17f https://www.encodeproject.org/files/ENCFF175NXK/@@download/ENCFF175NXK.bigWig hg19 released borderline replicate concordance ENCFF751KOC bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF245NUX 6088672 ENCODE Processing Pipeline cac54d736e79735d480362f52914ce41 https://www.encodeproject.org/files/ENCFF751KOC/@@download/ENCFF751KOC.bed.gz hg19 released borderline replicate concordance ENCFF199NZF bigBed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF751KOC 11165021 ENCODE Processing Pipeline 8479212902329d06106dd8f546f667a2 https://www.encodeproject.org/files/ENCFF199NZF/@@download/ENCFF199NZF.bigBed hg19 released borderline replicate concordance ENCFF821FWZ bed narrowPeak optimal idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF307HAT, ENCFF568PRH, ENCFF751KOC 87444 ENCODE Processing Pipeline fff2c705a143fea85e22b8f7d06c186e https://www.encodeproject.org/files/ENCFF821FWZ/@@download/ENCFF821FWZ.bed.gz hg19 released borderline replicate concordance ENCFF699UTQ bigBed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF307HAT 11173000 ENCODE Processing Pipeline 44ed3555f8adb6d53731e3e26654131c https://www.encodeproject.org/files/ENCFF699UTQ/@@download/ENCFF699UTQ.bigBed hg19 released borderline replicate concordance ENCFF579JHZ bigBed narrowPeak conservative idr thresholded peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF033ZMB 138183 ENCODE Processing Pipeline 176c6ebaea520f83f7ae1c07b7e0cef9 https://www.encodeproject.org/files/ENCFF579JHZ/@@download/ENCFF579JHZ.bigBed hg19 released borderline replicate concordance ENCFF953SOH fastq reads ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF672YYT 3010056090 Michael Snyder, Stanford be7234835c9c4419dd9e0d296d1e52c0 SRA:SRR6214223 https://www.encodeproject.org/files/ENCFF953SOH/@@download/ENCFF953SOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF868MWO/ released mild to moderate bottlenecking NTR biosample ENCFF780PZK fastq reads ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF581WJZ 4662129797 Michael Snyder, Stanford 716fef47ba866212201409bc1eab7557 SRA:SRR6214222 https://www.encodeproject.org/files/ENCFF780PZK/@@download/ENCFF780PZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF926HWQ/ released mild to moderate bottlenecking NTR biosample ENCFF672YYT fastq reads ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF953SOH 3121671773 Michael Snyder, Stanford 9355f1de86f96e46a53de8e0eec68083 SRA:SRR6214223 https://www.encodeproject.org/files/ENCFF672YYT/@@download/ENCFF672YYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF745ZXO/ released mild to moderate bottlenecking NTR biosample ENCFF581WJZ fastq reads ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF780PZK 4838257170 Michael Snyder, Stanford ec782388144aadac87f2ebae69124818 SRA:SRR6214222 https://www.encodeproject.org/files/ENCFF581WJZ/@@download/ENCFF581WJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF776RZI/ released mild to moderate bottlenecking NTR biosample ENCFF914ZQU bam unfiltered alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF581WJZ, ENCFF643CGH, ENCFF780PZK 9952054379 ENCODE Processing Pipeline 0ba1f24f7a6ce39c34de4d8809b09a90 https://www.encodeproject.org/files/ENCFF914ZQU/@@download/ENCFF914ZQU.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF450REQ bam unfiltered alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF672YYT, ENCFF807MUK, ENCFF953SOH 6300233071 ENCODE Processing Pipeline c8dac3788e0a4c9a5b9d639057f6ff04 https://www.encodeproject.org/files/ENCFF450REQ/@@download/ENCFF450REQ.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF864IHK bam unfiltered alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF643CGH, ENCFF672YYT, ENCFF953SOH 6313469340 ENCODE Processing Pipeline 24e30a5caa6aaf7d68317e09852fe77c https://www.encodeproject.org/files/ENCFF864IHK/@@download/ENCFF864IHK.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF570EFC bam unfiltered alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF581WJZ, ENCFF780PZK, ENCFF807MUK 9936191087 ENCODE Processing Pipeline adfef13fefda43a11433bd6c38a82068 https://www.encodeproject.org/files/ENCFF570EFC/@@download/ENCFF570EFC.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF371TIX bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF581WJZ, ENCFF643CGH, ENCFF780PZK 7767633549 ENCODE Processing Pipeline 7c5c6ffe7a6a4b6c78bc1f3a84e9a012 https://www.encodeproject.org/files/ENCFF371TIX/@@download/ENCFF371TIX.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF766RZV bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF643CGH, ENCFF672YYT, ENCFF953SOH 5039395951 ENCODE Processing Pipeline 0a19fac142a146ff014a6efde0993dc6 https://www.encodeproject.org/files/ENCFF766RZV/@@download/ENCFF766RZV.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF140MOX bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF672YYT, ENCFF807MUK, ENCFF953SOH 5035042642 ENCODE Processing Pipeline 3c52f58ea6ab5cf9486c11e0c43f4315 https://www.encodeproject.org/files/ENCFF140MOX/@@download/ENCFF140MOX.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF366UNV bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF581WJZ, ENCFF780PZK, ENCFF807MUK 7760398043 ENCODE Processing Pipeline 644f0e193e1d6d9acd49362a7ddbc7d7 https://www.encodeproject.org/files/ENCFF366UNV/@@download/ENCFF366UNV.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF154XPT bigWig signal p-value ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF113PTE, ENCFF366UNV, ENCFF761NWZ 1934341288 ENCODE Processing Pipeline b0fde765f4b250d5ca7fa5fc99b03cd8 https://www.encodeproject.org/files/ENCFF154XPT/@@download/ENCFF154XPT.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF011GSD bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF113PTE, ENCFF140MOX, ENCFF761NWZ 7009034 ENCODE Processing Pipeline 389d592272571e25cbc0a3b3aa6dead8 https://www.encodeproject.org/files/ENCFF011GSD/@@download/ENCFF011GSD.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF166YLC bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF113PTE, ENCFF140MOX, ENCFF366UNV, ENCFF761NWZ 7067877 ENCODE Processing Pipeline 3c2d51821259c19f415fcab12fc93daa https://www.encodeproject.org/files/ENCFF166YLC/@@download/ENCFF166YLC.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF802OPW bigBed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF011GSD 13153326 ENCODE Processing Pipeline e72dfe74938b80a41f35515df7e5efa3 https://www.encodeproject.org/files/ENCFF802OPW/@@download/ENCFF802OPW.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF386FCZ bigWig signal p-value ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF113PTE, ENCFF140MOX, ENCFF761NWZ 1682071310 ENCODE Processing Pipeline d69959ae5614a584980cae7b9c86f441 https://www.encodeproject.org/files/ENCFF386FCZ/@@download/ENCFF386FCZ.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF400BYV bigWig fold change over control ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF113PTE, ENCFF140MOX, ENCFF761NWZ 1860478015 ENCODE Processing Pipeline 5fd1430329ccf0e08c029824cd592897 https://www.encodeproject.org/files/ENCFF400BYV/@@download/ENCFF400BYV.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF957HZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF259XYR 2979789 ENCODE Processing Pipeline 79880f3bc9898ac70bd8f00026e22e02 https://www.encodeproject.org/files/ENCFF957HZQ/@@download/ENCFF957HZQ.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF519POR bigWig fold change over control ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF113PTE, ENCFF140MOX, ENCFF366UNV, ENCFF761NWZ 2584341073 ENCODE Processing Pipeline d2e63d0fe638f2691cc431fa3f20583a https://www.encodeproject.org/files/ENCFF519POR/@@download/ENCFF519POR.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF026ADR bigBed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF465IOZ 13083611 ENCODE Processing Pipeline 7c9c2b2fd4725d6394dc41b750095b3a https://www.encodeproject.org/files/ENCFF026ADR/@@download/ENCFF026ADR.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF314WRA bigBed narrowPeak conservative idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF677GYY 2833408 ENCODE Processing Pipeline 4c44d6e0b1d393da00e58b64862656a0 https://www.encodeproject.org/files/ENCFF314WRA/@@download/ENCFF314WRA.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF576BXP bigWig signal p-value ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF113PTE, ENCFF140MOX, ENCFF366UNV, ENCFF761NWZ 2141228564 ENCODE Processing Pipeline 62d47d2aac1e7b92d728be133a073688 https://www.encodeproject.org/files/ENCFF576BXP/@@download/ENCFF576BXP.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF352WNS bigWig fold change over control ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF113PTE, ENCFF366UNV, ENCFF761NWZ 2233641831 ENCODE Processing Pipeline 6903af710ad7caddacc3bc791bb09657 https://www.encodeproject.org/files/ENCFF352WNS/@@download/ENCFF352WNS.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF677GYY bed narrowPeak conservative idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF011GSD, ENCFF166YLC, ENCFF465IOZ 1470473 ENCODE Processing Pipeline 56b37f94c649224d8df538a12d1d14f6 https://www.encodeproject.org/files/ENCFF677GYY/@@download/ENCFF677GYY.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF702VXF bigBed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF166YLC 13031647 ENCODE Processing Pipeline 047c00f0dc3169a61a18799fd5cfdc80 https://www.encodeproject.org/files/ENCFF702VXF/@@download/ENCFF702VXF.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF259XYR bed narrowPeak optimal idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF011GSD, ENCFF166YLC, ENCFF465IOZ 1551773 ENCODE Processing Pipeline 02a67a4ed01b96ee32b7c7c06a2bb4cb https://www.encodeproject.org/files/ENCFF259XYR/@@download/ENCFF259XYR.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF465IOZ bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF113PTE, ENCFF366UNV, ENCFF761NWZ 7050446 ENCODE Processing Pipeline b37e92be4f3a447e40d01464b356c013 https://www.encodeproject.org/files/ENCFF465IOZ/@@download/ENCFF465IOZ.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF027KLN bigWig signal p-value ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF483ELD, ENCFF766RZV, ENCFF769UET 1796044396 ENCODE Processing Pipeline edd6171dde71584f06b708a924eaf516 https://www.encodeproject.org/files/ENCFF027KLN/@@download/ENCFF027KLN.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF513QVB bigBed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF809MHX 13228950 ENCODE Processing Pipeline dac483add98201e46336cfc6d1ffe05a https://www.encodeproject.org/files/ENCFF513QVB/@@download/ENCFF513QVB.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF390TAY bigWig signal p-value ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF371TIX, ENCFF483ELD, ENCFF766RZV, ENCFF769UET 2398812824 ENCODE Processing Pipeline 8f8b249aa6216f6a91453cce9dc8d60f https://www.encodeproject.org/files/ENCFF390TAY/@@download/ENCFF390TAY.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF485RVE bigBed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF297ITF 13044666 ENCODE Processing Pipeline bc1198477136057d91d21b36cd5529a0 https://www.encodeproject.org/files/ENCFF485RVE/@@download/ENCFF485RVE.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF773RMX bed narrowPeak conservative idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF129NEP, ENCFF297ITF, ENCFF419RSJ, ENCFF809MHX 1477841 ENCODE Processing Pipeline 1f6a3b4e653414a981551c673c5994e9 https://www.encodeproject.org/files/ENCFF773RMX/@@download/ENCFF773RMX.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF807GDK bigBed narrowPeak conservative idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF773RMX 2850026 ENCODE Processing Pipeline e9c30a094f74384ffe4f744f9b967084 https://www.encodeproject.org/files/ENCFF807GDK/@@download/ENCFF807GDK.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF608HDR bigWig fold change over control ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF483ELD, ENCFF766RZV, ENCFF769UET 1857118142 ENCODE Processing Pipeline 6f1bccba480a0eeb09e3ad0e54994c0e https://www.encodeproject.org/files/ENCFF608HDR/@@download/ENCFF608HDR.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF481UTA bigWig signal p-value ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF371TIX, ENCFF483ELD, ENCFF769UET 1843015758 ENCODE Processing Pipeline 71cecb3cd4383ff867523979142a629c https://www.encodeproject.org/files/ENCFF481UTA/@@download/ENCFF481UTA.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF233QTZ bigWig fold change over control ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF371TIX, ENCFF483ELD, ENCFF769UET 2225535894 ENCODE Processing Pipeline cee2f6abaa0773316dbca8394fadfa1d https://www.encodeproject.org/files/ENCFF233QTZ/@@download/ENCFF233QTZ.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF142KJM bigBed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF129NEP 13303187 ENCODE Processing Pipeline 75423d17606b7b3709d20e5f1878ee30 https://www.encodeproject.org/files/ENCFF142KJM/@@download/ENCFF142KJM.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF809MHX bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF371TIX, ENCFF483ELD, ENCFF769UET 7152766 ENCODE Processing Pipeline 628e62315faf83f564a7c8faee355f2d https://www.encodeproject.org/files/ENCFF809MHX/@@download/ENCFF809MHX.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF297ITF bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF371TIX, ENCFF483ELD, ENCFF766RZV, ENCFF769UET 7073559 ENCODE Processing Pipeline 92740c4cfe1241b8754942f2e84207f3 https://www.encodeproject.org/files/ENCFF297ITF/@@download/ENCFF297ITF.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF589EBF bigWig fold change over control ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF371TIX, ENCFF483ELD, ENCFF766RZV, ENCFF769UET 2611164284 ENCODE Processing Pipeline 2b73f16ed3a02ec330ddd4d2978f2f9b https://www.encodeproject.org/files/ENCFF589EBF/@@download/ENCFF589EBF.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF129NEP bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF483ELD, ENCFF766RZV, ENCFF769UET 7122093 ENCODE Processing Pipeline 817d9cc816e49feb3906b45f114a22bc https://www.encodeproject.org/files/ENCFF129NEP/@@download/ENCFF129NEP.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF147YCW bed narrowPeak optimal idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF129NEP, ENCFF297ITF, ENCFF419RSJ, ENCFF809MHX 1559193 ENCODE Processing Pipeline 5ee46df8363dba1b15ef262f4b6ba2f8 https://www.encodeproject.org/files/ENCFF147YCW/@@download/ENCFF147YCW.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF679KOF bigBed narrowPeak optimal idr thresholded peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF147YCW 2998095 ENCODE Processing Pipeline 9c6145b6f4fecade1db081dcf41d9301 https://www.encodeproject.org/files/ENCFF679KOF/@@download/ENCFF679KOF.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF687ONI fastq reads ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF501ZOW 3331677223 Michael Snyder, Stanford f5bbc0a1ba4d8b1c1669588fb3f4a961 SRA:SRR6213513 https://www.encodeproject.org/files/ENCFF687ONI/@@download/ENCFF687ONI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF501ZOW fastq reads ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF687ONI 3397841147 Michael Snyder, Stanford 24f4758cec9c57c74619d68b6d5f2b06 SRA:SRR6213513 https://www.encodeproject.org/files/ENCFF501ZOW/@@download/ENCFF501ZOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF540YVR fastq reads ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF005ZXV 3396902103 Michael Snyder, Stanford b39b1a42547c9250c438001348b350df SRA:SRR6213512 https://www.encodeproject.org/files/ENCFF540YVR/@@download/ENCFF540YVR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF005ZXV fastq reads ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF540YVR 3468437606 Michael Snyder, Stanford 3cce320498715483b2b61fdbc64b4cc3 SRA:SRR6213512 https://www.encodeproject.org/files/ENCFF005ZXV/@@download/ENCFF005ZXV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF557NZI bam unfiltered alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 100 ENCFF501ZOW, ENCFF687ONI, ENCFF807MUK 6381096574 ENCODE Processing Pipeline 731cdd6c6918e50eae5401d000816bed https://www.encodeproject.org/files/ENCFF557NZI/@@download/ENCFF557NZI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF591LIM bam unfiltered alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 100 ENCFF005ZXV, ENCFF540YVR, ENCFF807MUK 6517843730 ENCODE Processing Pipeline cef8191c9820add0ea3d8154af6bbca6 https://www.encodeproject.org/files/ENCFF591LIM/@@download/ENCFF591LIM.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF351FEV bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 100 ENCFF005ZXV, ENCFF540YVR, ENCFF643CGH 3499977686 ENCODE Processing Pipeline a493d38adc06bf83357ad5a800e467ea https://www.encodeproject.org/files/ENCFF351FEV/@@download/ENCFF351FEV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF615FQC bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 100 ENCFF005ZXV, ENCFF540YVR, ENCFF807MUK 3498324117 ENCODE Processing Pipeline 23d1a0eb10dfc3c83de676c0b5702ff9 https://www.encodeproject.org/files/ENCFF615FQC/@@download/ENCFF615FQC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF228WYN bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 100 ENCFF501ZOW, ENCFF643CGH, ENCFF687ONI 3329220638 ENCODE Processing Pipeline b6e813464507295d30a9a7c0da6ef4d1 https://www.encodeproject.org/files/ENCFF228WYN/@@download/ENCFF228WYN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF619EIQ bam unfiltered alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 100 ENCFF501ZOW, ENCFF643CGH, ENCFF687ONI 6383143386 ENCODE Processing Pipeline f8ef7271eaa642fd9a938fce48c0fe25 https://www.encodeproject.org/files/ENCFF619EIQ/@@download/ENCFF619EIQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF141OWA bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 100 ENCFF501ZOW, ENCFF687ONI, ENCFF807MUK 3328175970 ENCODE Processing Pipeline 3d9a95c5714b7b43f2c4d4837f6b535b https://www.encodeproject.org/files/ENCFF141OWA/@@download/ENCFF141OWA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF715ZZI bam unfiltered alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 100 ENCFF005ZXV, ENCFF540YVR, ENCFF643CGH 6520080395 ENCODE Processing Pipeline fe232328a0e1b678d27474e664bffb90 https://www.encodeproject.org/files/ENCFF715ZZI/@@download/ENCFF715ZZI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF064XRP bigWig fold change over control ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF141OWA 950095415 ENCODE Processing Pipeline 9e9f86cf95a9e15f28b7edeb7d756224 https://www.encodeproject.org/files/ENCFF064XRP/@@download/ENCFF064XRP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF416UJL bigWig fold change over control ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF141OWA, ENCFF583FAG, ENCFF615FQC 1800961234 ENCODE Processing Pipeline 25acf566de10b6d9b110c6b6f146f5ee https://www.encodeproject.org/files/ENCFF416UJL/@@download/ENCFF416UJL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF416REC bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF141OWA 6074062 ENCODE Processing Pipeline 39183c4e4f803671ec6d19a4ee3b8718 https://www.encodeproject.org/files/ENCFF416REC/@@download/ENCFF416REC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF119ZDE bigBed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF251IQI 11184283 ENCODE Processing Pipeline 804dcddc81b268e8da02b7ca6abfa274 https://www.encodeproject.org/files/ENCFF119ZDE/@@download/ENCFF119ZDE.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF027QFM bigWig signal p-value ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF141OWA, ENCFF583FAG, ENCFF615FQC 1704153322 ENCODE Processing Pipeline a93d0e006111b1d1e21a7717f7c1e523 https://www.encodeproject.org/files/ENCFF027QFM/@@download/ENCFF027QFM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF807CMU bigBed narrowPeak optimal idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF500ZLG 342207 ENCODE Processing Pipeline b637f5f2b99c0745051a13ef3aa3ed55 https://www.encodeproject.org/files/ENCFF807CMU/@@download/ENCFF807CMU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF326MZC bigWig signal p-value ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF141OWA 851461570 ENCODE Processing Pipeline 55e946500851cd0597cf3514c71f84f6 https://www.encodeproject.org/files/ENCFF326MZC/@@download/ENCFF326MZC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF030MUA bigWig signal p-value ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF583FAG, ENCFF615FQC 863821109 ENCODE Processing Pipeline c5e432aefb69ad1873b4a8affcbf552d https://www.encodeproject.org/files/ENCFF030MUA/@@download/ENCFF030MUA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF456CDH bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF141OWA, ENCFF583FAG, ENCFF615FQC 6943272 ENCODE Processing Pipeline fd35b8a3b8041eea3753c12eb023be49 https://www.encodeproject.org/files/ENCFF456CDH/@@download/ENCFF456CDH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF793LTG bigBed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF416REC 11219344 ENCODE Processing Pipeline 400b2b7ef42665c27b3bfeab396ff555 https://www.encodeproject.org/files/ENCFF793LTG/@@download/ENCFF793LTG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF214TOJ bigBed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF456CDH 13283741 ENCODE Processing Pipeline 3eabd1b9e75d29c37056d1f6c28c36e5 https://www.encodeproject.org/files/ENCFF214TOJ/@@download/ENCFF214TOJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF017ZLI bed narrowPeak conservative idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF251IQI, ENCFF416REC, ENCFF456CDH 109411 ENCODE Processing Pipeline 85da1876502e4c889ea1ba34f8f0645e https://www.encodeproject.org/files/ENCFF017ZLI/@@download/ENCFF017ZLI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF875WEC bigWig fold change over control ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF583FAG, ENCFF615FQC 924518834 ENCODE Processing Pipeline 73fe129ae853080a79f623d4ed1ce47b https://www.encodeproject.org/files/ENCFF875WEC/@@download/ENCFF875WEC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF251IQI bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF583FAG, ENCFF615FQC 5908527 ENCODE Processing Pipeline a4aba28356eac8887694b326817848ec https://www.encodeproject.org/files/ENCFF251IQI/@@download/ENCFF251IQI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF554TGK bigBed narrowPeak conservative idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF017ZLI 278502 ENCODE Processing Pipeline 8329b5d27e1262d1494649a70fae1842 https://www.encodeproject.org/files/ENCFF554TGK/@@download/ENCFF554TGK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF500ZLG bed narrowPeak optimal idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF251IQI, ENCFF416REC, ENCFF456CDH 151143 ENCODE Processing Pipeline 5d4a367a225c6a84d3af1987fecf7168 https://www.encodeproject.org/files/ENCFF500ZLG/@@download/ENCFF500ZLG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF741QZG bigWig signal p-value ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF351FEV, ENCFF426RDP 820140367 ENCODE Processing Pipeline afbf338ea2af906cd9f58ad6341799f2 https://www.encodeproject.org/files/ENCFF741QZG/@@download/ENCFF741QZG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF135PER bigWig signal p-value ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF228WYN, ENCFF291AFY, ENCFF351FEV, ENCFF426RDP 1532532146 ENCODE Processing Pipeline e62894c1ea2ff109a99aabe18466ee65 https://www.encodeproject.org/files/ENCFF135PER/@@download/ENCFF135PER.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF371WJN bigWig fold change over control ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF351FEV, ENCFF426RDP 920543315 ENCODE Processing Pipeline 305fd672b8f16bfc2957a9d9fe9b9883 https://www.encodeproject.org/files/ENCFF371WJN/@@download/ENCFF371WJN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF543KJW bigBed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF799JVD 11232686 ENCODE Processing Pipeline 75e168abdd8f65d5356839bfafd8a035 https://www.encodeproject.org/files/ENCFF543KJW/@@download/ENCFF543KJW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF082RHY bigWig fold change over control ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF228WYN, ENCFF291AFY 957855290 ENCODE Processing Pipeline 9c5972d48be7183529d362e3501ce3ff https://www.encodeproject.org/files/ENCFF082RHY/@@download/ENCFF082RHY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF799JVD bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF228WYN, ENCFF291AFY 6070798 ENCODE Processing Pipeline a087c4a109434d6f518870c0c92b48a7 https://www.encodeproject.org/files/ENCFF799JVD/@@download/ENCFF799JVD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF659LXK bed narrowPeak conservative idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF777QIR, ENCFF799JVD, ENCFF980BLG 113797 ENCODE Processing Pipeline 6c99ba1ecadce01e297c4ef0c3d79129 https://www.encodeproject.org/files/ENCFF659LXK/@@download/ENCFF659LXK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF091AYX bed narrowPeak optimal idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF777QIR, ENCFF799JVD, ENCFF980BLG 153262 ENCODE Processing Pipeline fd8d09eaf565c86ea720f9efca855862 https://www.encodeproject.org/files/ENCFF091AYX/@@download/ENCFF091AYX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF139MUH bigWig fold change over control ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF228WYN, ENCFF291AFY, ENCFF351FEV, ENCFF426RDP 1833932661 ENCODE Processing Pipeline d83916719b6ce162ba2847a3f6ff4c5d https://www.encodeproject.org/files/ENCFF139MUH/@@download/ENCFF139MUH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF777QIR bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF351FEV, ENCFF426RDP 5902254 ENCODE Processing Pipeline 6367cc3b749ddd13a04d24c4639f2fa2 https://www.encodeproject.org/files/ENCFF777QIR/@@download/ENCFF777QIR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF241WLB bigBed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF777QIR 11195582 ENCODE Processing Pipeline 08630412f6cb79fc2eecdda207f80c70 https://www.encodeproject.org/files/ENCFF241WLB/@@download/ENCFF241WLB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF393DFH bigWig signal p-value ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF228WYN, ENCFF291AFY 983250157 ENCODE Processing Pipeline 2f12c43ab361b6627ae9e3b362404f88 https://www.encodeproject.org/files/ENCFF393DFH/@@download/ENCFF393DFH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF980BLG bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF228WYN, ENCFF291AFY, ENCFF351FEV, ENCFF426RDP 6951856 ENCODE Processing Pipeline 0d2e6eda0f938f479996a19c55a1f067 https://www.encodeproject.org/files/ENCFF980BLG/@@download/ENCFF980BLG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF835OSF bigBed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF980BLG 13319961 ENCODE Processing Pipeline 0e512a8b1be081b803be5bfc4f829108 https://www.encodeproject.org/files/ENCFF835OSF/@@download/ENCFF835OSF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF559JVF bigBed narrowPeak conservative idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF659LXK 284116 ENCODE Processing Pipeline 452c5234e1f7db0c56a7696fdc9c98a4 https://www.encodeproject.org/files/ENCFF559JVF/@@download/ENCFF559JVF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF351BQL bigBed narrowPeak optimal idr thresholded peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF091AYX 345066 ENCODE Processing Pipeline b53a7c6891f40f90455fa16d19bb46a6 https://www.encodeproject.org/files/ENCFF351BQL/@@download/ENCFF351BQL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF774IAM fastq reads ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF090URG 2599725799 Michael Snyder, Stanford 0c4fc2cc859820129667fc10233ab70d SRA:SRR6213085 https://www.encodeproject.org/files/ENCFF774IAM/@@download/ENCFF774IAM.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released mild to moderate bottlenecking ENCFF090URG fastq reads ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF774IAM 3171032557 Michael Snyder, Stanford 4dc2266bf769bc35892abfa95d55f619 SRA:SRR6213085 https://www.encodeproject.org/files/ENCFF090URG/@@download/ENCFF090URG.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released mild to moderate bottlenecking ENCFF383GYI fastq reads ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF696OAD 2831317440 Michael Snyder, Stanford 53b6b1e81e2b26e96d26ef658839504e SRA:SRR6213084 https://www.encodeproject.org/files/ENCFF383GYI/@@download/ENCFF383GYI.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released mild to moderate bottlenecking ENCFF696OAD fastq reads ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF383GYI 3382152585 Michael Snyder, Stanford 115f63f4e72b05e7d9a7d7eb95e74f5e SRA:SRR6213084 https://www.encodeproject.org/files/ENCFF696OAD/@@download/ENCFF696OAD.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released mild to moderate bottlenecking ENCFF719MHL bam unfiltered alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF090URG, ENCFF774IAM, ENCFF807MUK 5708814498 ENCODE Processing Pipeline c743639c9fee0ed9bfc37a16e1e6f379 https://www.encodeproject.org/files/ENCFF719MHL/@@download/ENCFF719MHL.bam hg19 released mild to moderate bottlenecking ENCFF469EUD bam unfiltered alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF090URG, ENCFF643CGH, ENCFF774IAM 5723300552 ENCODE Processing Pipeline eb736905dec9b4e8c3c9b876f8f3d11c https://www.encodeproject.org/files/ENCFF469EUD/@@download/ENCFF469EUD.bam GRCh38 released mild to moderate bottlenecking ENCFF731ADB bam unfiltered alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF383GYI, ENCFF643CGH, ENCFF696OAD 6045366644 ENCODE Processing Pipeline b2f163683c1392d5761562f279faf2e5 https://www.encodeproject.org/files/ENCFF731ADB/@@download/ENCFF731ADB.bam GRCh38 released mild to moderate bottlenecking ENCFF894HIP bam unfiltered alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF383GYI, ENCFF696OAD, ENCFF807MUK 6031264680 ENCODE Processing Pipeline c452a0ace505ae6849cc75731e4df192 https://www.encodeproject.org/files/ENCFF894HIP/@@download/ENCFF894HIP.bam hg19 released mild to moderate bottlenecking ENCFF690ANL bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF090URG, ENCFF774IAM, ENCFF807MUK 4511239846 ENCODE Processing Pipeline 72b47e2dc036832eadf5aa29119fa565 https://www.encodeproject.org/files/ENCFF690ANL/@@download/ENCFF690ANL.bam hg19 released mild to moderate bottlenecking ENCFF317BEW bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF383GYI, ENCFF696OAD, ENCFF807MUK 4616010762 ENCODE Processing Pipeline 4a07cebcf7b4df27c288a9ae01e14705 https://www.encodeproject.org/files/ENCFF317BEW/@@download/ENCFF317BEW.bam hg19 released mild to moderate bottlenecking ENCFF939EOP bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF383GYI, ENCFF643CGH, ENCFF696OAD 4626378835 ENCODE Processing Pipeline f0379d8ca2fbb0caff5151de5a054c4a https://www.encodeproject.org/files/ENCFF939EOP/@@download/ENCFF939EOP.bam GRCh38 released mild to moderate bottlenecking ENCFF207SAV bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF090URG, ENCFF643CGH, ENCFF774IAM 4521449078 ENCODE Processing Pipeline e00d83bf646b942b6c848e2702cd0330 https://www.encodeproject.org/files/ENCFF207SAV/@@download/ENCFF207SAV.bam GRCh38 released mild to moderate bottlenecking ENCFF245JFF bigBed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF842KPA 11599061 ENCODE Processing Pipeline e81c0acd32f5cf2e3907e27bd9c4cbe6 https://www.encodeproject.org/files/ENCFF245JFF/@@download/ENCFF245JFF.bigBed GRCh38 released mild to moderate bottlenecking ENCFF170ULY bigBed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF566DRL 11300031 ENCODE Processing Pipeline 3360006108d1b13d4a8a7a973b08d62e https://www.encodeproject.org/files/ENCFF170ULY/@@download/ENCFF170ULY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF711GOB bigWig fold change over control ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF939EOP 1985681653 ENCODE Processing Pipeline ecc0f5060f6986d06a1366bbfa19eeae https://www.encodeproject.org/files/ENCFF711GOB/@@download/ENCFF711GOB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF128NBS bigWig signal p-value ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF172XZA, ENCFF317BEW, ENCFF843IXX 2029833176 ENCODE Processing Pipeline ffb9f6411086add470bace2a4f37e746 https://www.encodeproject.org/files/ENCFF128NBS/@@download/ENCFF128NBS.bigWig hg19 released mild to moderate bottlenecking ENCFF155SRS bigWig signal p-value ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF207SAV, ENCFF475DWJ, ENCFF621RXC 2015108927 ENCODE Processing Pipeline dcca4656fff9630b739ae9635adecf4d https://www.encodeproject.org/files/ENCFF155SRS/@@download/ENCFF155SRS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF497LZY bigWig signal p-value ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF207SAV, ENCFF475DWJ, ENCFF621RXC, ENCFF939EOP 2352638143 ENCODE Processing Pipeline 73fb3b606420b95cc0711063a317f00e https://www.encodeproject.org/files/ENCFF497LZY/@@download/ENCFF497LZY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF506PXL bed narrowPeak optimal idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF566DRL, ENCFF842KPA, ENCFF886JTL 7584 ENCODE Processing Pipeline 5a79443e6f9d09972c9ede0a40278e4d https://www.encodeproject.org/files/ENCFF506PXL/@@download/ENCFF506PXL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF208AXE bigWig fold change over control ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF207SAV, ENCFF475DWJ, ENCFF621RXC 1949596665 ENCODE Processing Pipeline afcd457d2289533accdf89bd35ca64bd https://www.encodeproject.org/files/ENCFF208AXE/@@download/ENCFF208AXE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF566DRL bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF207SAV, ENCFF475DWJ, ENCFF621RXC, ENCFF939EOP 7025559 ENCODE Processing Pipeline dc3777c5610bc2e6be830a720058a548 https://www.encodeproject.org/files/ENCFF566DRL/@@download/ENCFF566DRL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF807DRI bigBed narrowPeak optimal idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF506PXL 81561 ENCODE Processing Pipeline 611476c76652e00fb37b78f7b167c9b5 https://www.encodeproject.org/files/ENCFF807DRI/@@download/ENCFF807DRI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF739HOR bigWig signal p-value ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF939EOP 1881950766 ENCODE Processing Pipeline 10a1929b0fc7e706c76b09affcf7314e https://www.encodeproject.org/files/ENCFF739HOR/@@download/ENCFF739HOR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF285DLJ bigWig fold change over control ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF207SAV, ENCFF475DWJ, ENCFF621RXC, ENCFF939EOP 2656186746 ENCODE Processing Pipeline 72122df88b4e87ba8d84be0afc9de8f7 https://www.encodeproject.org/files/ENCFF285DLJ/@@download/ENCFF285DLJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF842KPA bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF207SAV, ENCFF475DWJ, ENCFF621RXC 6468209 ENCODE Processing Pipeline eb13b967028439743318d23d3a36c605 https://www.encodeproject.org/files/ENCFF842KPA/@@download/ENCFF842KPA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF886JTL bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF939EOP 6536060 ENCODE Processing Pipeline a633c8a21c7294738d0c8c12cc189a63 https://www.encodeproject.org/files/ENCFF886JTL/@@download/ENCFF886JTL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF470JWD bigBed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF886JTL 11618311 ENCODE Processing Pipeline e561145e0454466b42b82975afd8ec96 https://www.encodeproject.org/files/ENCFF470JWD/@@download/ENCFF470JWD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF611LKA bed narrowPeak conservative idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF566DRL, ENCFF842KPA, ENCFF886JTL 4183 ENCODE Processing Pipeline 72bb6c3c653bb6b87f158e8d11a0c459 https://www.encodeproject.org/files/ENCFF611LKA/@@download/ENCFF611LKA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF837UKK bigBed narrowPeak conservative idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF611LKA 81097 ENCODE Processing Pipeline 5f0f2833e2082d12eea6ecb271963315 https://www.encodeproject.org/files/ENCFF837UKK/@@download/ENCFF837UKK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF750VIK bigWig fold change over control ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF172XZA, ENCFF690ANL, ENCFF843IXX 1992013990 ENCODE Processing Pipeline bb36d216c0c75ef03062ec96cbfde804 https://www.encodeproject.org/files/ENCFF750VIK/@@download/ENCFF750VIK.bigWig hg19 released mild to moderate bottlenecking ENCFF504SCC bigWig signal p-value ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF172XZA, ENCFF690ANL, ENCFF843IXX 1934963252 ENCODE Processing Pipeline 1731bbca676b33100410ed0f6d90cf00 https://www.encodeproject.org/files/ENCFF504SCC/@@download/ENCFF504SCC.bigWig hg19 released mild to moderate bottlenecking ENCFF650KWX bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF172XZA, ENCFF690ANL, ENCFF843IXX 6459142 ENCODE Processing Pipeline d34a5afcdb811a6026d8aee7d8205db2 https://www.encodeproject.org/files/ENCFF650KWX/@@download/ENCFF650KWX.bed.gz hg19 released mild to moderate bottlenecking ENCFF593TJL bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF172XZA, ENCFF317BEW, ENCFF843IXX 6528837 ENCODE Processing Pipeline 47a51033c2938c7e1006eadcc3726280 https://www.encodeproject.org/files/ENCFF593TJL/@@download/ENCFF593TJL.bed.gz hg19 released mild to moderate bottlenecking ENCFF252QTX bigBed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF593TJL 11592914 ENCODE Processing Pipeline 38128b49424a444167a6c4e3b3e51cbc https://www.encodeproject.org/files/ENCFF252QTX/@@download/ENCFF252QTX.bigBed hg19 released mild to moderate bottlenecking ENCFF533XXD bigBed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF624REB 11277026 ENCODE Processing Pipeline f539fd37711b5f04c0c3569097d82946 https://www.encodeproject.org/files/ENCFF533XXD/@@download/ENCFF533XXD.bigBed hg19 released mild to moderate bottlenecking ENCFF487SYH bigBed narrowPeak conservative idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF413KUZ 64899 ENCODE Processing Pipeline 74970d0d83d826e3a7a9377fa0df1c8e https://www.encodeproject.org/files/ENCFF487SYH/@@download/ENCFF487SYH.bigBed hg19 released mild to moderate bottlenecking ENCFF052YIL bed narrowPeak optimal idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF593TJL, ENCFF624REB, ENCFF650KWX 5625 ENCODE Processing Pipeline d302d6e124651bc641b05621e8669fe0 https://www.encodeproject.org/files/ENCFF052YIL/@@download/ENCFF052YIL.bed.gz hg19 released mild to moderate bottlenecking ENCFF058UPY bigWig fold change over control ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF172XZA, ENCFF317BEW, ENCFF690ANL, ENCFF843IXX 2665648269 ENCODE Processing Pipeline 1246d16a952c1552f8e2f5fbcb1d92a8 https://www.encodeproject.org/files/ENCFF058UPY/@@download/ENCFF058UPY.bigWig hg19 released mild to moderate bottlenecking ENCFF351EKV bigBed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF650KWX 11572378 ENCODE Processing Pipeline 81790382de80be6ccbe141231480ff7d https://www.encodeproject.org/files/ENCFF351EKV/@@download/ENCFF351EKV.bigBed hg19 released mild to moderate bottlenecking ENCFF170MCY bigWig signal p-value ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF172XZA, ENCFF317BEW, ENCFF690ANL, ENCFF843IXX 2536822100 ENCODE Processing Pipeline 1b105681cf4036b9baa395c8ea93c4fe https://www.encodeproject.org/files/ENCFF170MCY/@@download/ENCFF170MCY.bigWig hg19 released mild to moderate bottlenecking ENCFF691GDZ bigWig fold change over control ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF172XZA, ENCFF317BEW, ENCFF843IXX 1976480678 ENCODE Processing Pipeline a1962ee6b7aa01c0a2ee1197787cb591 https://www.encodeproject.org/files/ENCFF691GDZ/@@download/ENCFF691GDZ.bigWig hg19 released mild to moderate bottlenecking ENCFF624REB bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF172XZA, ENCFF317BEW, ENCFF690ANL, ENCFF843IXX 7016961 ENCODE Processing Pipeline 7cffacf8bba20aeff83ff7b629e1db74 https://www.encodeproject.org/files/ENCFF624REB/@@download/ENCFF624REB.bed.gz hg19 released mild to moderate bottlenecking ENCFF781KDT bigBed narrowPeak optimal idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF052YIL 64483 ENCODE Processing Pipeline d0bc2943f3357eeddec8713920117117 https://www.encodeproject.org/files/ENCFF781KDT/@@download/ENCFF781KDT.bigBed hg19 released mild to moderate bottlenecking ENCFF413KUZ bed narrowPeak conservative idr thresholded peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF593TJL, ENCFF624REB, ENCFF650KWX 2147 ENCODE Processing Pipeline 9a836bcf0e024afe3c485df3a3ed7076 https://www.encodeproject.org/files/ENCFF413KUZ/@@download/ENCFF413KUZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF905VYB fastq reads ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF391TLW 3480364531 Michael Snyder, Stanford 0b1b31340bcdb4001fd5b3c338671b2a https://www.encodeproject.org/files/ENCFF905VYB/@@download/ENCFF905VYB.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF653JCP fastq reads ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF277TPF 3635853490 Michael Snyder, Stanford 061f0d78391a54aa6879165e26ecf402 https://www.encodeproject.org/files/ENCFF653JCP/@@download/ENCFF653JCP.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF391TLW fastq reads ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF905VYB 3993899869 Michael Snyder, Stanford 9a66f8264834319dc9182be877282fee https://www.encodeproject.org/files/ENCFF391TLW/@@download/ENCFF391TLW.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF277TPF fastq reads ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF653JCP 3943407053 Michael Snyder, Stanford 7626178e1c078f45b2c733805e889c72 https://www.encodeproject.org/files/ENCFF277TPF/@@download/ENCFF277TPF.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF400AEB bam unfiltered alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 100 ENCFF277TPF, ENCFF653JCP, ENCFF807MUK 7360137914 ENCODE Processing Pipeline baf0dd655b07c13bb66bc9efc59a7547 https://www.encodeproject.org/files/ENCFF400AEB/@@download/ENCFF400AEB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF554KNI bam unfiltered alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 100 ENCFF391TLW, ENCFF807MUK, ENCFF905VYB 7056701051 ENCODE Processing Pipeline 236c7fcc60ac030e9c778d0c884ad132 https://www.encodeproject.org/files/ENCFF554KNI/@@download/ENCFF554KNI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF496CNA bam unfiltered alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 100 ENCFF391TLW, ENCFF643CGH, ENCFF905VYB 7060028982 ENCODE Processing Pipeline b273ff1ea6bb3bd3b5cbb18e8ae782be https://www.encodeproject.org/files/ENCFF496CNA/@@download/ENCFF496CNA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF138KFR bam unfiltered alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 100 ENCFF277TPF, ENCFF643CGH, ENCFF653JCP 7377575493 ENCODE Processing Pipeline 3fe24e11a789f5f2bb6152243029007d https://www.encodeproject.org/files/ENCFF138KFR/@@download/ENCFF138KFR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF991OZB bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 100 ENCFF391TLW, ENCFF643CGH, ENCFF905VYB 4139974324 ENCODE Processing Pipeline 43fb627d8f840bd8aae4573d12e11924 https://www.encodeproject.org/files/ENCFF991OZB/@@download/ENCFF991OZB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF742OQD bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 100 ENCFF277TPF, ENCFF653JCP, ENCFF807MUK 5841556680 ENCODE Processing Pipeline 1858ad03e640753e8f9d22cc7927a72b https://www.encodeproject.org/files/ENCFF742OQD/@@download/ENCFF742OQD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF377ZFJ bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 100 ENCFF391TLW, ENCFF807MUK, ENCFF905VYB 4134030165 ENCODE Processing Pipeline 1a7b6c2b011eb644a3c40f65dd630ea8 https://www.encodeproject.org/files/ENCFF377ZFJ/@@download/ENCFF377ZFJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF933BBF bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 100 ENCFF277TPF, ENCFF643CGH, ENCFF653JCP 5854062140 ENCODE Processing Pipeline 7071525d567f680763ad7601ca5ed891 https://www.encodeproject.org/files/ENCFF933BBF/@@download/ENCFF933BBF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF773DRK bigWig signal p-value ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF377ZFJ, ENCFF447KVS, ENCFF823USR 1483740598 ENCODE Processing Pipeline d4ce2e7d672f149b93d60d8ea55c3024 https://www.encodeproject.org/files/ENCFF773DRK/@@download/ENCFF773DRK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF324VLD bigWig signal p-value ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF742OQD, ENCFF823USR 1898946094 ENCODE Processing Pipeline 57948d68e0510644540a6a3ac1ba3897 https://www.encodeproject.org/files/ENCFF324VLD/@@download/ENCFF324VLD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF459XDG bigWig signal p-value ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF377ZFJ, ENCFF447KVS, ENCFF742OQD, ENCFF823USR 2244821174 ENCODE Processing Pipeline b75a1f64a6911f8ce50913fd00b861df https://www.encodeproject.org/files/ENCFF459XDG/@@download/ENCFF459XDG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF995BED bigWig fold change over control ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF377ZFJ, ENCFF447KVS, ENCFF823USR 1655174320 ENCODE Processing Pipeline dd60da2b5396d9872837ca7bcc6713d3 https://www.encodeproject.org/files/ENCFF995BED/@@download/ENCFF995BED.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF898RLY bigWig fold change over control ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF742OQD, ENCFF823USR 1980638311 ENCODE Processing Pipeline 406a2fb36d07de6af8e99b5dedf41fa8 https://www.encodeproject.org/files/ENCFF898RLY/@@download/ENCFF898RLY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF188FHJ bigWig fold change over control ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF377ZFJ, ENCFF447KVS, ENCFF742OQD, ENCFF823USR 2404224839 ENCODE Processing Pipeline b12df0e2fa96b9e8ef4ab30a0f922986 https://www.encodeproject.org/files/ENCFF188FHJ/@@download/ENCFF188FHJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF025JML bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF742OQD, ENCFF823USR 7061953 ENCODE Processing Pipeline de92bf5c409750790eb42a43548eaaf7 https://www.encodeproject.org/files/ENCFF025JML/@@download/ENCFF025JML.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF113NRF bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF377ZFJ, ENCFF447KVS, ENCFF742OQD, ENCFF823USR 7321287 ENCODE Processing Pipeline a41da385a4b2d92d4d1467d1d7541c76 https://www.encodeproject.org/files/ENCFF113NRF/@@download/ENCFF113NRF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF935QIH bigBed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF182RMK 11223254 ENCODE Processing Pipeline e2bd0505ea6916fc5f8cb99389c2ede5 https://www.encodeproject.org/files/ENCFF935QIH/@@download/ENCFF935QIH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF533YSD bigBed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF025JML 11161501 ENCODE Processing Pipeline 166f62339a527d33d9c03f974d6c3084 https://www.encodeproject.org/files/ENCFF533YSD/@@download/ENCFF533YSD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF182RMK bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF377ZFJ, ENCFF447KVS, ENCFF823USR 6880641 ENCODE Processing Pipeline dfb6dafb35949a303c044cd06491bf37 https://www.encodeproject.org/files/ENCFF182RMK/@@download/ENCFF182RMK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF347ZHA bigBed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF113NRF 11119887 ENCODE Processing Pipeline 1906ea173e32d162b95d9c14c497e946 https://www.encodeproject.org/files/ENCFF347ZHA/@@download/ENCFF347ZHA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF636ZFM bigBed narrowPeak conservative idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF985CTN 152609 ENCODE Processing Pipeline 570848a816d1398c009a526facff1412 https://www.encodeproject.org/files/ENCFF636ZFM/@@download/ENCFF636ZFM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF985CTN bed narrowPeak conservative idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF025JML, ENCFF113NRF, ENCFF182RMK 46746 ENCODE Processing Pipeline 16dcc8470f57ebf4daed6d7b7d6f15d0 https://www.encodeproject.org/files/ENCFF985CTN/@@download/ENCFF985CTN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF584RSB bigBed narrowPeak optimal idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF603ZTG 205246 ENCODE Processing Pipeline 679366e668a162d828dc2026764fb7ba https://www.encodeproject.org/files/ENCFF584RSB/@@download/ENCFF584RSB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF603ZTG bed narrowPeak optimal idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF025JML, ENCFF113NRF, ENCFF182RMK 79469 ENCODE Processing Pipeline e7ad7adc98859bc1860630ed5c788440 https://www.encodeproject.org/files/ENCFF603ZTG/@@download/ENCFF603ZTG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF308JMC bigWig signal p-value ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF991OZB 1343185887 ENCODE Processing Pipeline 6caadf2282c4824218fee70ea40b54fc https://www.encodeproject.org/files/ENCFF308JMC/@@download/ENCFF308JMC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF585VBW bigWig signal p-value ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF933BBF 1641101681 ENCODE Processing Pipeline 20a973026e2e16c11c5ca887d4432185 https://www.encodeproject.org/files/ENCFF585VBW/@@download/ENCFF585VBW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF588CRI bigWig signal p-value ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF933BBF, ENCFF991OZB 2250632546 ENCODE Processing Pipeline 3596216bcf242a9f1765a27eafa2808d https://www.encodeproject.org/files/ENCFF588CRI/@@download/ENCFF588CRI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF587VBV bigWig fold change over control ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF991OZB 1663695137 ENCODE Processing Pipeline 47c35367e9baa9d1a59d62298da1525a https://www.encodeproject.org/files/ENCFF587VBV/@@download/ENCFF587VBV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF091GEW bigWig fold change over control ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF933BBF 1988589478 ENCODE Processing Pipeline 56e0898a46355849c5e40e5f32a18add https://www.encodeproject.org/files/ENCFF091GEW/@@download/ENCFF091GEW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF914RPB bigWig fold change over control ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF933BBF, ENCFF991OZB 2414028422 ENCODE Processing Pipeline 39155de2968fb122e62b963cfadbd349 https://www.encodeproject.org/files/ENCFF914RPB/@@download/ENCFF914RPB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF991OGF bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF933BBF 7005013 ENCODE Processing Pipeline 045a8566ef5904962fc2b2e7f263505c https://www.encodeproject.org/files/ENCFF991OGF/@@download/ENCFF991OGF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF049SDN bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF991OZB 6776651 ENCODE Processing Pipeline b992f56683e177bcd91a1f17fb397c36 https://www.encodeproject.org/files/ENCFF049SDN/@@download/ENCFF049SDN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF372SKL bigBed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF049SDN 11239077 ENCODE Processing Pipeline fc9ef7e524f34aac86f0de2d40ef02d0 https://www.encodeproject.org/files/ENCFF372SKL/@@download/ENCFF372SKL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF765DIU bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF933BBF, ENCFF991OZB 7313217 ENCODE Processing Pipeline 58b47c18db6f0493f9da4ec77c5ae7f2 https://www.encodeproject.org/files/ENCFF765DIU/@@download/ENCFF765DIU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF549AKN bigBed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF765DIU 11131720 ENCODE Processing Pipeline 94a0a772c57aaa56558c3c0a564bf25e https://www.encodeproject.org/files/ENCFF549AKN/@@download/ENCFF549AKN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF814EYV bigBed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF991OGF 11179956 ENCODE Processing Pipeline d6839729db79f4d7bc9d4c8e8cc04a85 https://www.encodeproject.org/files/ENCFF814EYV/@@download/ENCFF814EYV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF975PZQ bed narrowPeak conservative idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049SDN, ENCFF419RSJ, ENCFF765DIU, ENCFF991OGF 45890 ENCODE Processing Pipeline cc4b7623e53778acb2d71b08802b3194 https://www.encodeproject.org/files/ENCFF975PZQ/@@download/ENCFF975PZQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF670KAW bigBed narrowPeak conservative idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF975PZQ 152450 ENCODE Processing Pipeline d75b608d392fbac3db63636be61abdd1 https://www.encodeproject.org/files/ENCFF670KAW/@@download/ENCFF670KAW.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF290LSS bed narrowPeak optimal idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049SDN, ENCFF419RSJ, ENCFF765DIU, ENCFF991OGF 79332 ENCODE Processing Pipeline 86d02add851bce6c4e97b8cd4ed19089 https://www.encodeproject.org/files/ENCFF290LSS/@@download/ENCFF290LSS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF586OZR bigBed narrowPeak optimal idr thresholded peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF290LSS 206901 ENCODE Processing Pipeline ba3857918db9e46452a4c5c10fb30936 https://www.encodeproject.org/files/ENCFF586OZR/@@download/ENCFF586OZR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF706ERC fastq reads ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF797OQU 2823486656 Michael Snyder, Stanford 01ea2e20020d419e6b0f46cb5d4f2fe6 SRA:SRR6214025 https://www.encodeproject.org/files/ENCFF706ERC/@@download/ENCFF706ERC.fastq.gz Illumina HiSeq 4000 /files/ENCFF723EDR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF797OQU fastq reads ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF706ERC 3152232731 Michael Snyder, Stanford 17519aa25f471ff23179c56d651e37eb SRA:SRR6214025 https://www.encodeproject.org/files/ENCFF797OQU/@@download/ENCFF797OQU.fastq.gz Illumina HiSeq 4000 /files/ENCFF475OEA/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF580CPN bam unfiltered alignments ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF706ERC, ENCFF797OQU 5398999381 ENCODE Processing Pipeline 9ec96f121c3a8cba8997644627dca39b https://www.encodeproject.org/files/ENCFF580CPN/@@download/ENCFF580CPN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF026KBE bam alignments ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF706ERC, ENCFF797OQU 3140239571 ENCODE Processing Pipeline 676577b541aed38b5af211a635fcc3ad https://www.encodeproject.org/files/ENCFF026KBE/@@download/ENCFF026KBE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF595PFS bam unfiltered alignments ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF706ERC, ENCFF797OQU, ENCFF807MUK 5398736267 ENCODE Processing Pipeline e52d6abf0d4a1cce65a82558619401f3 https://www.encodeproject.org/files/ENCFF595PFS/@@download/ENCFF595PFS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF978LUN bam alignments ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF706ERC, ENCFF797OQU, ENCFF807MUK 3135285056 ENCODE Processing Pipeline 4f4156e4c923b8f6f5d43f55ca32fb63 https://www.encodeproject.org/files/ENCFF978LUN/@@download/ENCFF978LUN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF029OUE bigWig signal p-value ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF018XQD, ENCFF978LUN 1110575393 ENCODE Processing Pipeline 1bab55ecd6d67a271d63f9ee0b3ef43f https://www.encodeproject.org/files/ENCFF029OUE/@@download/ENCFF029OUE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF284MDF bigWig fold change over control ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF018XQD, ENCFF978LUN 1107675186 ENCODE Processing Pipeline 35239f960e4805df70a222ba56fe29e2 https://www.encodeproject.org/files/ENCFF284MDF/@@download/ENCFF284MDF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF797UDY bed narrowPeak peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF018XQD, ENCFF978LUN 5449500 ENCODE Processing Pipeline da805062dcd6c3b30b748e0096150216 https://www.encodeproject.org/files/ENCFF797UDY/@@download/ENCFF797UDY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF247XTI bigBed narrowPeak peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF797UDY 11536412 ENCODE Processing Pipeline 8bd0e8078dd55fa88809a3a93eb3ae12 https://www.encodeproject.org/files/ENCFF247XTI/@@download/ENCFF247XTI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF041MRZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF797UDY 78070 ENCODE Processing Pipeline 74d635d8929ef7d7291a46e21fc2fe69 https://www.encodeproject.org/files/ENCFF041MRZ/@@download/ENCFF041MRZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF124HMC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF041MRZ 177319 ENCODE Processing Pipeline 8fd26f4550e32b9dca665f8faf58c009 https://www.encodeproject.org/files/ENCFF124HMC/@@download/ENCFF124HMC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF787GMZ bigWig signal p-value ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF026KBE, ENCFF611TZK 1280536731 ENCODE Processing Pipeline f2b0da6112a965633392b7666076eac5 https://www.encodeproject.org/files/ENCFF787GMZ/@@download/ENCFF787GMZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF026KDN bigBed narrowPeak peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF895LVK 11562647 ENCODE Processing Pipeline 5d0673ada199f1f15ae863f0dc70fd1d https://www.encodeproject.org/files/ENCFF026KDN/@@download/ENCFF026KDN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF587FIX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF480OTT 182519 ENCODE Processing Pipeline 514632da870a307355637af8f5d81115 https://www.encodeproject.org/files/ENCFF587FIX/@@download/ENCFF587FIX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF895LVK bed narrowPeak peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF026KBE, ENCFF611TZK 5461537 ENCODE Processing Pipeline 982071e1419b566498f84015d4a19425 https://www.encodeproject.org/files/ENCFF895LVK/@@download/ENCFF895LVK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF975UWV bigWig fold change over control ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF026KBE, ENCFF611TZK 1104203994 ENCODE Processing Pipeline fd0ff1c86587da043b07fb478f633b4e https://www.encodeproject.org/files/ENCFF975UWV/@@download/ENCFF975UWV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF480OTT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF419RSJ, ENCFF895LVK 80417 ENCODE Processing Pipeline d73be1f191bba68f3f3851c8bc8a7494 https://www.encodeproject.org/files/ENCFF480OTT/@@download/ENCFF480OTT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF808AUX fastq reads ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF272DKU 3031299635 Michael Snyder, Stanford 496be8f4ab4f3960bf2be75e4ea2ba77 SRA:SRR6213858 https://www.encodeproject.org/files/ENCFF808AUX/@@download/ENCFF808AUX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption ENCFF272DKU fastq reads ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF808AUX 3020554193 Michael Snyder, Stanford 8fd140d9ebdf867a93d721c29801d743 SRA:SRR6213858 https://www.encodeproject.org/files/ENCFF272DKU/@@download/ENCFF272DKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption ENCFF991XUU fastq reads ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF385PER 3757080367 Michael Snyder, Stanford 8eb9c3d198b4ffe6a15484ceab2e4eb5 SRA:SRR6213857 https://www.encodeproject.org/files/ENCFF991XUU/@@download/ENCFF991XUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption ENCFF385PER fastq reads ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF991XUU 3751149613 Michael Snyder, Stanford f2bf89590af327a616a540f13dde15eb SRA:SRR6213857 https://www.encodeproject.org/files/ENCFF385PER/@@download/ENCFF385PER.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption ENCFF012LMN bam unfiltered alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF272DKU, ENCFF643CGH, ENCFF808AUX 6458044954 ENCODE Processing Pipeline e5de6c5ebd62efbd35f9135c6a035441 https://www.encodeproject.org/files/ENCFF012LMN/@@download/ENCFF012LMN.bam GRCh38 released antibody characterized with exemption ENCFF267XGD bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF272DKU, ENCFF643CGH, ENCFF808AUX 4995463580 ENCODE Processing Pipeline 985ab813d45fc5fc97688c7bfdaa50f1 https://www.encodeproject.org/files/ENCFF267XGD/@@download/ENCFF267XGD.bam GRCh38 released antibody characterized with exemption ENCFF682DSM bam unfiltered alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF385PER, ENCFF643CGH, ENCFF991XUU 7961853415 ENCODE Processing Pipeline e3b373e3b0a475c42b7408924893ddfc https://www.encodeproject.org/files/ENCFF682DSM/@@download/ENCFF682DSM.bam GRCh38 released antibody characterized with exemption ENCFF037MZM bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF385PER, ENCFF643CGH, ENCFF991XUU 6108274787 ENCODE Processing Pipeline dadde76d924a0aa32e14afe6980ff8b5 https://www.encodeproject.org/files/ENCFF037MZM/@@download/ENCFF037MZM.bam GRCh38 released antibody characterized with exemption ENCFF828AIQ bigWig fold change over control ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF227IZS, ENCFF267XGD 1218066168 ENCODE Processing Pipeline 9d5f03d3e499cdd680522d7187c54bed https://www.encodeproject.org/files/ENCFF828AIQ/@@download/ENCFF828AIQ.bigWig GRCh38 released antibody characterized with exemption ENCFF594AFR bigBed narrowPeak conservative idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF377AEV 313245 ENCODE Processing Pipeline 01654ffb1a7828bf7eca3bbc67e221c2 https://www.encodeproject.org/files/ENCFF594AFR/@@download/ENCFF594AFR.bigBed GRCh38 released antibody characterized with exemption ENCFF760BEM bigWig signal p-value ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF037MZM, ENCFF910IKB 1302567554 ENCODE Processing Pipeline 3c384d3629e05b5228dc4fc6798387af https://www.encodeproject.org/files/ENCFF760BEM/@@download/ENCFF760BEM.bigWig GRCh38 released antibody characterized with exemption ENCFF641JAT bigWig signal p-value ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF227IZS, ENCFF267XGD 1091813658 ENCODE Processing Pipeline 57bfbd1c11a4065657d143a6d22b197d https://www.encodeproject.org/files/ENCFF641JAT/@@download/ENCFF641JAT.bigWig GRCh38 released antibody characterized with exemption ENCFF587ZGZ bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF227IZS, ENCFF267XGD 6604307 ENCODE Processing Pipeline c0ffa42859cc7d6922a6861c963ba551 https://www.encodeproject.org/files/ENCFF587ZGZ/@@download/ENCFF587ZGZ.bed.gz GRCh38 released antibody characterized with exemption ENCFF774HQT bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF037MZM, ENCFF227IZS, ENCFF267XGD, ENCFF910IKB 7249160 ENCODE Processing Pipeline 2b70178d56c04ae3f598ddad676b4ed0 https://www.encodeproject.org/files/ENCFF774HQT/@@download/ENCFF774HQT.bed.gz GRCh38 released antibody characterized with exemption ENCFF823JSO bigBed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF684MMR 11226885 ENCODE Processing Pipeline e13e255c562c8ae045b012d11b95a662 https://www.encodeproject.org/files/ENCFF823JSO/@@download/ENCFF823JSO.bigBed GRCh38 released antibody characterized with exemption ENCFF286OFS bigBed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF587ZGZ 13289337 ENCODE Processing Pipeline f516b1b9856ed52a163d9591198c9394 https://www.encodeproject.org/files/ENCFF286OFS/@@download/ENCFF286OFS.bigBed GRCh38 released antibody characterized with exemption ENCFF611GTD bigWig fold change over control ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF037MZM, ENCFF910IKB 1421412935 ENCODE Processing Pipeline 83e4cf62df7f4a68754591e1b98faefe https://www.encodeproject.org/files/ENCFF611GTD/@@download/ENCFF611GTD.bigWig GRCh38 released antibody characterized with exemption ENCFF344MKI bed narrowPeak optimal idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF587ZGZ, ENCFF684MMR, ENCFF774HQT 222363 ENCODE Processing Pipeline 7fd96f224170a2e482976b73227b529d https://www.encodeproject.org/files/ENCFF344MKI/@@download/ENCFF344MKI.bed.gz GRCh38 released antibody characterized with exemption ENCFF835KBE bigWig fold change over control ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF037MZM, ENCFF227IZS, ENCFF267XGD, ENCFF910IKB 2317452677 ENCODE Processing Pipeline 15fd51a80c1cbe9ba672a68de85d985c https://www.encodeproject.org/files/ENCFF835KBE/@@download/ENCFF835KBE.bigWig GRCh38 released antibody characterized with exemption ENCFF377AEV bed narrowPeak conservative idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF587ZGZ, ENCFF684MMR, ENCFF774HQT 141101 ENCODE Processing Pipeline 270d78f72a2bbdf1561c36f6bdcd0b25 https://www.encodeproject.org/files/ENCFF377AEV/@@download/ENCFF377AEV.bed.gz GRCh38 released antibody characterized with exemption ENCFF344TRP bigBed narrowPeak optimal idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF344MKI 432206 ENCODE Processing Pipeline 16a5fd200068d1458bbdab2657682744 https://www.encodeproject.org/files/ENCFF344TRP/@@download/ENCFF344TRP.bigBed GRCh38 released antibody characterized with exemption ENCFF021TXP bigWig signal p-value ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF037MZM, ENCFF227IZS, ENCFF267XGD, ENCFF910IKB 1802111347 ENCODE Processing Pipeline fa0ad2c9f45e7f5ee6328413f225f59e https://www.encodeproject.org/files/ENCFF021TXP/@@download/ENCFF021TXP.bigWig GRCh38 released antibody characterized with exemption ENCFF684MMR bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF037MZM, ENCFF910IKB 6642279 ENCODE Processing Pipeline cc36d398bea9f8832f7abe8d497c703a https://www.encodeproject.org/files/ENCFF684MMR/@@download/ENCFF684MMR.bed.gz GRCh38 released antibody characterized with exemption ENCFF180JCL bigBed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF774HQT 13232964 ENCODE Processing Pipeline 0c864dc338a3fefee759417d2922d3c0 https://www.encodeproject.org/files/ENCFF180JCL/@@download/ENCFF180JCL.bigBed GRCh38 released antibody characterized with exemption ENCFF095OQG bam unfiltered alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF272DKU, ENCFF807MUK, ENCFF808AUX 6453862386 ENCODE Processing Pipeline 2e104425f5df4ce3e17d39bc5bf9c366 https://www.encodeproject.org/files/ENCFF095OQG/@@download/ENCFF095OQG.bam hg19 released antibody characterized with exemption ENCFF937PDQ bam unfiltered alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF385PER, ENCFF807MUK, ENCFF991XUU 7956476411 ENCODE Processing Pipeline 19f3f37cf95a9a88b19f128713ff0510 https://www.encodeproject.org/files/ENCFF937PDQ/@@download/ENCFF937PDQ.bam hg19 released antibody characterized with exemption ENCFF669LOS bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF272DKU, ENCFF807MUK, ENCFF808AUX 4992890604 ENCODE Processing Pipeline 60df4faac53280d1dc842188cabc37dc https://www.encodeproject.org/files/ENCFF669LOS/@@download/ENCFF669LOS.bam hg19 released antibody characterized with exemption ENCFF359SWY bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF385PER, ENCFF807MUK, ENCFF991XUU 6103137889 ENCODE Processing Pipeline 877d7cf3233e35a5050c6e6bc55eacc5 https://www.encodeproject.org/files/ENCFF359SWY/@@download/ENCFF359SWY.bam hg19 released antibody characterized with exemption ENCFF525VEX bigWig signal p-value ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF359SWY, ENCFF581ZJL 1290630771 ENCODE Processing Pipeline a29f9b80ccfbec28ad9f58c5f7edc321 https://www.encodeproject.org/files/ENCFF525VEX/@@download/ENCFF525VEX.bigWig hg19 released antibody characterized with exemption ENCFF589UBD bigWig signal p-value ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF051LWI, ENCFF359SWY, ENCFF581ZJL, ENCFF669LOS 1980154106 ENCODE Processing Pipeline d51cbc6f3c589114bab61bd23e0669dd https://www.encodeproject.org/files/ENCFF589UBD/@@download/ENCFF589UBD.bigWig hg19 released antibody characterized with exemption ENCFF080MKV bigWig fold change over control ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF051LWI, ENCFF669LOS 1216874588 ENCODE Processing Pipeline aed2f19bb7c8e31b830ef35857c487f1 https://www.encodeproject.org/files/ENCFF080MKV/@@download/ENCFF080MKV.bigWig hg19 released antibody characterized with exemption ENCFF055JYT bigWig signal p-value ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF051LWI, ENCFF669LOS 1027503042 ENCODE Processing Pipeline 3046502bf90bf554786c2ba60ded2b36 https://www.encodeproject.org/files/ENCFF055JYT/@@download/ENCFF055JYT.bigWig hg19 released antibody characterized with exemption ENCFF315YFC bigWig fold change over control ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF359SWY, ENCFF581ZJL 1426715249 ENCODE Processing Pipeline b8e49b62f393815ce13c90765d1adf29 https://www.encodeproject.org/files/ENCFF315YFC/@@download/ENCFF315YFC.bigWig hg19 released antibody characterized with exemption ENCFF232MAF bigWig fold change over control ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF051LWI, ENCFF359SWY, ENCFF581ZJL, ENCFF669LOS 2297407700 ENCODE Processing Pipeline 91b82471d6158e35f9c49861a58336ac https://www.encodeproject.org/files/ENCFF232MAF/@@download/ENCFF232MAF.bigWig hg19 released antibody characterized with exemption ENCFF576BTO bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF359SWY, ENCFF581ZJL 6637717 ENCODE Processing Pipeline 6588a2d0a029d0bb80a0e2cd4a096786 https://www.encodeproject.org/files/ENCFF576BTO/@@download/ENCFF576BTO.bed.gz hg19 released antibody characterized with exemption ENCFF828CXZ bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF051LWI, ENCFF669LOS 6607514 ENCODE Processing Pipeline ffcb3b639ed32f8755e3898c3bbebd6f https://www.encodeproject.org/files/ENCFF828CXZ/@@download/ENCFF828CXZ.bed.gz hg19 released antibody characterized with exemption ENCFF749QSR bigBed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF828CXZ 13279763 ENCODE Processing Pipeline e2d47506112a56423de203402ce06a69 https://www.encodeproject.org/files/ENCFF749QSR/@@download/ENCFF749QSR.bigBed hg19 released antibody characterized with exemption ENCFF056IYP bed narrowPeak conservative idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF576BTO, ENCFF828CXZ, ENCFF989TPD 141885 ENCODE Processing Pipeline 4aee9a8718a074e0c121233a28679fbe https://www.encodeproject.org/files/ENCFF056IYP/@@download/ENCFF056IYP.bed.gz hg19 released antibody characterized with exemption ENCFF332ICQ bed narrowPeak optimal idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF576BTO, ENCFF828CXZ, ENCFF989TPD 219396 ENCODE Processing Pipeline 4716a1a4fe143684798d21330c0087b2 https://www.encodeproject.org/files/ENCFF332ICQ/@@download/ENCFF332ICQ.bed.gz hg19 released antibody characterized with exemption ENCFF423SVK bigBed narrowPeak conservative idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF056IYP 312331 ENCODE Processing Pipeline afa42474ce39870bca6e8a5ac194ddf1 https://www.encodeproject.org/files/ENCFF423SVK/@@download/ENCFF423SVK.bigBed hg19 released antibody characterized with exemption ENCFF567RSB bigBed narrowPeak optimal idr thresholded peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF332ICQ 425717 ENCODE Processing Pipeline 040603488064e34955b79a12b5d2f355 https://www.encodeproject.org/files/ENCFF567RSB/@@download/ENCFF567RSB.bigBed hg19 released antibody characterized with exemption ENCFF989TPD bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF051LWI, ENCFF359SWY, ENCFF581ZJL, ENCFF669LOS 7243359 ENCODE Processing Pipeline 0f531ff32e31e785da4579746adb3a97 https://www.encodeproject.org/files/ENCFF989TPD/@@download/ENCFF989TPD.bed.gz hg19 released antibody characterized with exemption ENCFF978TWK bigBed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF576BTO 11208764 ENCODE Processing Pipeline 6576cf58d588e734997e12836b4cb6f9 https://www.encodeproject.org/files/ENCFF978TWK/@@download/ENCFF978TWK.bigBed hg19 released antibody characterized with exemption ENCFF887YRX bigBed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF989TPD 13216254 ENCODE Processing Pipeline ad7790bc041aa4468cbbdd1fb2debf3e https://www.encodeproject.org/files/ENCFF887YRX/@@download/ENCFF887YRX.bigBed hg19 released antibody characterized with exemption ENCFF748THJ fastq reads ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 1 101 paired-ended 2 ENCFF519ZJI 3371013869 Michael Snyder, Stanford 49bb1dc36d562a28f14a80c996b0f8a7 SRA:SRR6214219 https://www.encodeproject.org/files/ENCFF748THJ/@@download/ENCFF748THJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF519ZJI fastq reads ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 1 101 paired-ended 1 ENCFF748THJ 2697226975 Michael Snyder, Stanford c33a9c4c19680ad8658c436b0c5021e8 SRA:SRR6214219 https://www.encodeproject.org/files/ENCFF519ZJI/@@download/ENCFF519ZJI.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF977ONA fastq reads ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 1 101 paired-ended 1 ENCFF457RTQ 2581763284 Michael Snyder, Stanford 88a0e2b710fa29990e86b08f3bcaeff8 SRA:SRR6214218 https://www.encodeproject.org/files/ENCFF977ONA/@@download/ENCFF977ONA.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF457RTQ fastq reads ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 1 101 paired-ended 2 ENCFF977ONA 3165324276 Michael Snyder, Stanford bdb71703b701cd19f376afe327f3be6e SRA:SRR6214218 https://www.encodeproject.org/files/ENCFF457RTQ/@@download/ENCFF457RTQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF062RFO bam unfiltered alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 101 ENCFF457RTQ, ENCFF807MUK, ENCFF977ONA 5855786496 ENCODE Processing Pipeline 91c66b4406ce84c356532ca4d0b8f245 https://www.encodeproject.org/files/ENCFF062RFO/@@download/ENCFF062RFO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF859OWC bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF519ZJI, ENCFF748THJ, ENCFF807MUK 4937770222 ENCODE Processing Pipeline f5ff95b4a327065f1ff6ee3d9842a169 https://www.encodeproject.org/files/ENCFF859OWC/@@download/ENCFF859OWC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF910UVR bam unfiltered alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF519ZJI, ENCFF748THJ, ENCFF807MUK 6215247041 ENCODE Processing Pipeline e78b590a1520357af28fa566de7d4643 https://www.encodeproject.org/files/ENCFF910UVR/@@download/ENCFF910UVR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF199CWG bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 101 ENCFF457RTQ, ENCFF807MUK, ENCFF977ONA 4671886715 ENCODE Processing Pipeline fee8489bf88474f9e2bd83482a10c3ba https://www.encodeproject.org/files/ENCFF199CWG/@@download/ENCFF199CWG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF144HGJ bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 101 ENCFF457RTQ, ENCFF643CGH, ENCFF977ONA 4676595021 ENCODE Processing Pipeline 867a64794afd2c9ba20c82cf73cf9de5 https://www.encodeproject.org/files/ENCFF144HGJ/@@download/ENCFF144HGJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF834KLZ bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF519ZJI, ENCFF643CGH, ENCFF748THJ 4942866493 ENCODE Processing Pipeline c6f395b792b64c6ae86600e0d2eb25fd https://www.encodeproject.org/files/ENCFF834KLZ/@@download/ENCFF834KLZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF623TSQ bam unfiltered alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 101 ENCFF457RTQ, ENCFF643CGH, ENCFF977ONA 5869225445 ENCODE Processing Pipeline a7f0e5a4c97ac888a01a6783756cd4da https://www.encodeproject.org/files/ENCFF623TSQ/@@download/ENCFF623TSQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF812GBZ bam unfiltered alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF519ZJI, ENCFF643CGH, ENCFF748THJ 6229581710 ENCODE Processing Pipeline 944872efa3026f0780b6d62af8b98c85 https://www.encodeproject.org/files/ENCFF812GBZ/@@download/ENCFF812GBZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF286PIS bigWig signal p-value ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF182WHU, ENCFF199CWG 1445075805 ENCODE Processing Pipeline 37ff91e40775f76afc370867ca67b86f https://www.encodeproject.org/files/ENCFF286PIS/@@download/ENCFF286PIS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF241ORB bigWig signal p-value ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF182WHU, ENCFF199CWG, ENCFF859OWC 1973997672 ENCODE Processing Pipeline 3641364bcfc6b041e5c001edda89e53b https://www.encodeproject.org/files/ENCFF241ORB/@@download/ENCFF241ORB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF337WUA bigWig signal p-value ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF859OWC 1723948239 ENCODE Processing Pipeline 5db9553d31ccb1205e028bf2256d8c85 https://www.encodeproject.org/files/ENCFF337WUA/@@download/ENCFF337WUA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF934VEB bigWig fold change over control ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF859OWC 1678155480 ENCODE Processing Pipeline 5f4ea52e05051256e3476e1f344fe156 https://www.encodeproject.org/files/ENCFF934VEB/@@download/ENCFF934VEB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF271BXX bigWig fold change over control ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF182WHU, ENCFF199CWG 1665424339 ENCODE Processing Pipeline 794e5c5e9961fa3e4eca8104100ac4c5 https://www.encodeproject.org/files/ENCFF271BXX/@@download/ENCFF271BXX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF275QNG bigWig fold change over control ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF182WHU, ENCFF199CWG, ENCFF859OWC 2272843329 ENCODE Processing Pipeline 95bcc6e0b585133e6219715edcaed50f https://www.encodeproject.org/files/ENCFF275QNG/@@download/ENCFF275QNG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF417YPX bigBed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF045FYZ 11064603 ENCODE Processing Pipeline 02e4a64e14915220336df1373b0586f6 https://www.encodeproject.org/files/ENCFF417YPX/@@download/ENCFF417YPX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF752ORJ bigBed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF621LNT 11227432 ENCODE Processing Pipeline 8e00eb7d724517d5cf3b71dcf7ca3156 https://www.encodeproject.org/files/ENCFF752ORJ/@@download/ENCFF752ORJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF292NNU bed narrowPeak conservative idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF001TDO, ENCFF045FYZ, ENCFF621LNT, ENCFF680MTL 16004 ENCODE Processing Pipeline cb2f9fd84e1a2ed537a55fff1601a764 https://www.encodeproject.org/files/ENCFF292NNU/@@download/ENCFF292NNU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF577NDT bigBed narrowPeak conservative idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF292NNU 77276 ENCODE Processing Pipeline 69a570890def8eb95375f1caef102bfb https://www.encodeproject.org/files/ENCFF577NDT/@@download/ENCFF577NDT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF045FYZ bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF859OWC 6734165 ENCODE Processing Pipeline d914e1978e5a81447f2803b0744b43ea https://www.encodeproject.org/files/ENCFF045FYZ/@@download/ENCFF045FYZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF621LNT bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF182WHU, ENCFF199CWG, ENCFF859OWC 7295023 ENCODE Processing Pipeline 98879ac18028d4a94918140499bd24c1 https://www.encodeproject.org/files/ENCFF621LNT/@@download/ENCFF621LNT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF852EYA bed narrowPeak optimal idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF001TDO, ENCFF045FYZ, ENCFF621LNT, ENCFF680MTL 29919 ENCODE Processing Pipeline 81a6d3f2c23abde31280f3d78e2aa8cf https://www.encodeproject.org/files/ENCFF852EYA/@@download/ENCFF852EYA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF680MTL bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF182WHU, ENCFF199CWG 6689488 ENCODE Processing Pipeline ed041474ac2fb32738aa9bbc241fe77d https://www.encodeproject.org/files/ENCFF680MTL/@@download/ENCFF680MTL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF488FSN bigBed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF680MTL 11074656 ENCODE Processing Pipeline 7a18a52710dcbb33e2efefc360b46e05 https://www.encodeproject.org/files/ENCFF488FSN/@@download/ENCFF488FSN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF809CCR bigBed narrowPeak optimal idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF852EYA 115100 ENCODE Processing Pipeline 7f31a328094d0a6f6267cfd3d20a4b21 https://www.encodeproject.org/files/ENCFF809CCR/@@download/ENCFF809CCR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF474TLV bigWig fold change over control ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF144HGJ, ENCFF810LLR 1655252435 ENCODE Processing Pipeline 76cda2e703950b5605201e6560686179 https://www.encodeproject.org/files/ENCFF474TLV/@@download/ENCFF474TLV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF368IGT bigWig signal p-value ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF810LLR, ENCFF834KLZ 1274853329 ENCODE Processing Pipeline 071ea33462e3059e9a802b5005d3d428 https://www.encodeproject.org/files/ENCFF368IGT/@@download/ENCFF368IGT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF014PRV bigWig fold change over control ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF810LLR, ENCFF834KLZ 1675947984 ENCODE Processing Pipeline deee21ce62c57cd3d773f3e582853a38 https://www.encodeproject.org/files/ENCFF014PRV/@@download/ENCFF014PRV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF024VYK bigWig signal p-value ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF144HGJ, ENCFF810LLR 1540838205 ENCODE Processing Pipeline d2ddd5d089d2fc5386a7cd5b3191e29c https://www.encodeproject.org/files/ENCFF024VYK/@@download/ENCFF024VYK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF647JZB bigBed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF617YIK 11068732 ENCODE Processing Pipeline 168e57792aa1bd2133445926d0931629 https://www.encodeproject.org/files/ENCFF647JZB/@@download/ENCFF647JZB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF794YLM bed narrowPeak conservative idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF419RSJ, ENCFF617YIK, ENCFF621QEA, ENCFF828RFB 17541 ENCODE Processing Pipeline a65a7f82b697c568fe8d8db4e3e50fd3 https://www.encodeproject.org/files/ENCFF794YLM/@@download/ENCFF794YLM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF475ISS bigWig signal p-value ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF144HGJ, ENCFF810LLR, ENCFF834KLZ 1938217886 ENCODE Processing Pipeline 2678d6d3af98d8baac70b0012fef334b https://www.encodeproject.org/files/ENCFF475ISS/@@download/ENCFF475ISS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF939EUV bigWig fold change over control ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF144HGJ, ENCFF810LLR, ENCFF834KLZ 2232228449 ENCODE Processing Pipeline 115a6f30c163dbf7f95548bee2c1f51f https://www.encodeproject.org/files/ENCFF939EUV/@@download/ENCFF939EUV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF617YIK bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF810LLR, ENCFF834KLZ 6780136 ENCODE Processing Pipeline 7d4b673dfd3dfbe7df9f521a02387e15 https://www.encodeproject.org/files/ENCFF617YIK/@@download/ENCFF617YIK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF892NSO bigBed narrowPeak optimal idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF728QYS 119354 ENCODE Processing Pipeline 1db1eddc1f284a95fd5c6ea092a3aa06 https://www.encodeproject.org/files/ENCFF892NSO/@@download/ENCFF892NSO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF828RFB bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF144HGJ, ENCFF810LLR, ENCFF834KLZ 7304322 ENCODE Processing Pipeline 4aad2f084f0f9b4186fcc9d04bd8c3c0 https://www.encodeproject.org/files/ENCFF828RFB/@@download/ENCFF828RFB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF069NFD bigBed narrowPeak conservative idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF794YLM 94645 ENCODE Processing Pipeline fc804f9d774e67a1ff796c9d9d7b87b3 https://www.encodeproject.org/files/ENCFF069NFD/@@download/ENCFF069NFD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF836ZAM bigBed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF828RFB 11247518 ENCODE Processing Pipeline db9fe8944dde3b37765a3ecab3f485b9 https://www.encodeproject.org/files/ENCFF836ZAM/@@download/ENCFF836ZAM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF621QEA bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF144HGJ, ENCFF810LLR 6698146 ENCODE Processing Pipeline 52c15d757091efd879cf2f0eef7d579d https://www.encodeproject.org/files/ENCFF621QEA/@@download/ENCFF621QEA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF987UIZ bigBed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 ENCFF621QEA 11090322 ENCODE Processing Pipeline ae991a9988c3435f6ee6021c917af0de https://www.encodeproject.org/files/ENCFF987UIZ/@@download/ENCFF987UIZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF728QYS bed narrowPeak optimal idr thresholded peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2, 3 ENCFF419RSJ, ENCFF617YIK, ENCFF621QEA, ENCFF828RFB 30899 ENCODE Processing Pipeline 81788f6050344a4ea8f884d95af405b8 https://www.encodeproject.org/files/ENCFF728QYS/@@download/ENCFF728QYS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF616IVU fastq reads ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF157OJP 2041202258 Michael Snyder, Stanford 8d75c409ba2d103a74f2f001d1ce1a8c SRA:SRR6212970 https://www.encodeproject.org/files/ENCFF616IVU/@@download/ENCFF616IVU.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking ENCFF157OJP fastq reads ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF616IVU 2454951863 Michael Snyder, Stanford 1c3acd855530a9d00496811b6aa5e73e SRA:SRR6212970 https://www.encodeproject.org/files/ENCFF157OJP/@@download/ENCFF157OJP.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking ENCFF038CZC fastq reads ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF307UWA 3421874501 Michael Snyder, Stanford 4b5faba017c0b49cc77fd2c1023cd40a SRA:SRR6212971 https://www.encodeproject.org/files/ENCFF038CZC/@@download/ENCFF038CZC.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking ENCFF307UWA fastq reads ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF038CZC 4032571880 Michael Snyder, Stanford 7401a0d1696b11f3b13ca33182d2347d SRA:SRR6212971 https://www.encodeproject.org/files/ENCFF307UWA/@@download/ENCFF307UWA.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking ENCFF401WQB bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF157OJP, ENCFF616IVU, ENCFF807MUK 3860283637 ENCODE Processing Pipeline b715f34fd6a6c717751ffbcddc8f2a71 https://www.encodeproject.org/files/ENCFF401WQB/@@download/ENCFF401WQB.bam hg19 released mild to moderate bottlenecking ENCFF895NLV bam unfiltered alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF157OJP, ENCFF616IVU, ENCFF807MUK 4632781861 ENCODE Processing Pipeline 3b78cf17f48a1318a42f9cccb022fcb6 https://www.encodeproject.org/files/ENCFF895NLV/@@download/ENCFF895NLV.bam hg19 released mild to moderate bottlenecking ENCFF953SBE bam unfiltered alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF038CZC, ENCFF307UWA, ENCFF807MUK 7171655520 ENCODE Processing Pipeline 59faf16de3f65f83edd890c3e9fe0f3f https://www.encodeproject.org/files/ENCFF953SBE/@@download/ENCFF953SBE.bam hg19 released mild to moderate bottlenecking ENCFF741WIH bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF038CZC, ENCFF307UWA, ENCFF807MUK 5851523544 ENCODE Processing Pipeline 8330b124e8ca84285f60951a778113c1 https://www.encodeproject.org/files/ENCFF741WIH/@@download/ENCFF741WIH.bam hg19 released mild to moderate bottlenecking ENCFF397HOV bam unfiltered alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF157OJP, ENCFF616IVU, ENCFF643CGH 4649110501 ENCODE Processing Pipeline a22c5dd0789ec44fdbc6082ad9343f20 https://www.encodeproject.org/files/ENCFF397HOV/@@download/ENCFF397HOV.bam GRCh38 released mild to moderate bottlenecking ENCFF422MGR bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF157OJP, ENCFF616IVU, ENCFF643CGH 3865662879 ENCODE Processing Pipeline d02b1e92885d9111a7c5c30eebf8a252 https://www.encodeproject.org/files/ENCFF422MGR/@@download/ENCFF422MGR.bam GRCh38 released mild to moderate bottlenecking ENCFF042FPM bam unfiltered alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF038CZC, ENCFF307UWA, ENCFF643CGH 7192596121 ENCODE Processing Pipeline d1c4e6b12644b832b1147576aa03e972 https://www.encodeproject.org/files/ENCFF042FPM/@@download/ENCFF042FPM.bam GRCh38 released mild to moderate bottlenecking ENCFF276FCZ bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF038CZC, ENCFF307UWA, ENCFF643CGH 5861372449 ENCODE Processing Pipeline c97a60216daed0ed43d5a6faa48ded10 https://www.encodeproject.org/files/ENCFF276FCZ/@@download/ENCFF276FCZ.bam GRCh38 released mild to moderate bottlenecking ENCFF045WNH bigWig signal p-value ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF276FCZ, ENCFF746SKT 1484810055 ENCODE Processing Pipeline 4f0f314a57fa1f653ced868e677764d1 https://www.encodeproject.org/files/ENCFF045WNH/@@download/ENCFF045WNH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF419QTW bigWig signal p-value ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF191XYH, ENCFF422MGR, ENCFF746SKT 1607335305 ENCODE Processing Pipeline caa963c693278cd2d02ddb1e267812d5 https://www.encodeproject.org/files/ENCFF419QTW/@@download/ENCFF419QTW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF611WCH bigBed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF996MJD 10855496 ENCODE Processing Pipeline c3252b2d5a6f09da0941b26844b82eb3 https://www.encodeproject.org/files/ENCFF611WCH/@@download/ENCFF611WCH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF483LUT bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF276FCZ, ENCFF746SKT 6916414 ENCODE Processing Pipeline f9e9bcbf447374d5209fb696cd78b1dc https://www.encodeproject.org/files/ENCFF483LUT/@@download/ENCFF483LUT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF548KVI bigBed narrowPeak conservative idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF768VQG 100796 ENCODE Processing Pipeline 2ab1a56b94d7e808b0e3732800aa1d68 https://www.encodeproject.org/files/ENCFF548KVI/@@download/ENCFF548KVI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF940OKX bigWig fold change over control ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF191XYH, ENCFF422MGR, ENCFF746SKT 1524716958 ENCODE Processing Pipeline 50c28e79a2ff8f7aede3fee83943284e https://www.encodeproject.org/files/ENCFF940OKX/@@download/ENCFF940OKX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF577ESF bigWig signal p-value ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF191XYH, ENCFF276FCZ, ENCFF422MGR, ENCFF746SKT 2250838947 ENCODE Processing Pipeline 7f5d7effe5fa0c93aae2a6993066f5fa https://www.encodeproject.org/files/ENCFF577ESF/@@download/ENCFF577ESF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF462OVP bigWig fold change over control ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF191XYH, ENCFF276FCZ, ENCFF422MGR, ENCFF746SKT 2380962270 ENCODE Processing Pipeline 0ed01353adf6517ba62b4a45119f3010 https://www.encodeproject.org/files/ENCFF462OVP/@@download/ENCFF462OVP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF837ORM bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF191XYH, ENCFF422MGR, ENCFF746SKT 6344564 ENCODE Processing Pipeline e8f3eeffa79465aefa7d22f4c7e6cfe2 https://www.encodeproject.org/files/ENCFF837ORM/@@download/ENCFF837ORM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF996MJD bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF191XYH, ENCFF276FCZ, ENCFF422MGR, ENCFF746SKT 7147222 ENCODE Processing Pipeline f989f08f4ed0647ecf0f00e71c4a51d5 https://www.encodeproject.org/files/ENCFF996MJD/@@download/ENCFF996MJD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF768VQG bed narrowPeak conservative idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF483LUT, ENCFF837ORM, ENCFF996MJD 16159 ENCODE Processing Pipeline 8c095da5ff38cdeb452b779397658951 https://www.encodeproject.org/files/ENCFF768VQG/@@download/ENCFF768VQG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF895MJB bed narrowPeak optimal idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF483LUT, ENCFF837ORM, ENCFF996MJD 26737 ENCODE Processing Pipeline 615377ac179439f913b1f3b0c0de9eee https://www.encodeproject.org/files/ENCFF895MJB/@@download/ENCFF895MJB.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF777MSM bigWig fold change over control ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF276FCZ, ENCFF746SKT 1947735370 ENCODE Processing Pipeline b0c6ba27b74870bc9820d3ecdac0c674 https://www.encodeproject.org/files/ENCFF777MSM/@@download/ENCFF777MSM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF594QBY bigBed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF483LUT 10943591 ENCODE Processing Pipeline 1036521758df04bc92507dd3dbc0e456 https://www.encodeproject.org/files/ENCFF594QBY/@@download/ENCFF594QBY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF260YAI bigBed narrowPeak optimal idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF895MJB 109147 ENCODE Processing Pipeline f0e5a6a839fb933c9ce9714cfc39d6e1 https://www.encodeproject.org/files/ENCFF260YAI/@@download/ENCFF260YAI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF706UCD bigBed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF837ORM 11273591 ENCODE Processing Pipeline d50b9044df546dc25127d2e203e5f803 https://www.encodeproject.org/files/ENCFF706UCD/@@download/ENCFF706UCD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF417ILK bigWig signal p-value ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF741WIH, ENCFF823USR 1456367075 ENCODE Processing Pipeline 3c0a3086f024a06f56e23529e6aeb392 https://www.encodeproject.org/files/ENCFF417ILK/@@download/ENCFF417ILK.bigWig hg19 released mild to moderate bottlenecking ENCFF855KUR bigBed narrowPeak conservative idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF066ZQT 100096 ENCODE Processing Pipeline c8810986ce4118079dca7701cc358864 https://www.encodeproject.org/files/ENCFF855KUR/@@download/ENCFF855KUR.bigBed hg19 released mild to moderate bottlenecking ENCFF083YCP bigWig signal p-value ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF401WQB, ENCFF447KVS, ENCFF741WIH, ENCFF823USR 2247898857 ENCODE Processing Pipeline b18e30de90670155049965e05ecccee6 https://www.encodeproject.org/files/ENCFF083YCP/@@download/ENCFF083YCP.bigWig hg19 released mild to moderate bottlenecking ENCFF066ZQT bed narrowPeak conservative idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF610HTV, ENCFF887ZYJ, ENCFF924OFW 16853 ENCODE Processing Pipeline 69648a8fc81e1be4cb80d286bcd029fd https://www.encodeproject.org/files/ENCFF066ZQT/@@download/ENCFF066ZQT.bed.gz hg19 released mild to moderate bottlenecking ENCFF808HNM bigWig signal p-value ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF401WQB, ENCFF447KVS, ENCFF823USR 1604048410 ENCODE Processing Pipeline 77d4029f4fab91b9b3f65911295e76da https://www.encodeproject.org/files/ENCFF808HNM/@@download/ENCFF808HNM.bigWig hg19 released mild to moderate bottlenecking ENCFF278OYH bigWig fold change over control ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF401WQB, ENCFF447KVS, ENCFF823USR 1504202176 ENCODE Processing Pipeline cb9b9d02b024b1a5e457495964dafc99 https://www.encodeproject.org/files/ENCFF278OYH/@@download/ENCFF278OYH.bigWig hg19 released mild to moderate bottlenecking ENCFF548KCH bigWig fold change over control ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF741WIH, ENCFF823USR 1913311602 ENCODE Processing Pipeline b056ff5962d1487a348a5941e9ba1ec1 https://www.encodeproject.org/files/ENCFF548KCH/@@download/ENCFF548KCH.bigWig hg19 released mild to moderate bottlenecking ENCFF012LGL bigWig fold change over control ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF401WQB, ENCFF447KVS, ENCFF741WIH, ENCFF823USR 2375935511 ENCODE Processing Pipeline 3d361ef16ff2158b0691ec18f3fcea4b https://www.encodeproject.org/files/ENCFF012LGL/@@download/ENCFF012LGL.bigWig hg19 released mild to moderate bottlenecking ENCFF887ZYJ bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF401WQB, ENCFF447KVS, ENCFF823USR 6094838 ENCODE Processing Pipeline 6f4eaca3fabb58dbeafc24774a441249 https://www.encodeproject.org/files/ENCFF887ZYJ/@@download/ENCFF887ZYJ.bed.gz hg19 released mild to moderate bottlenecking ENCFF610HTV bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF741WIH, ENCFF823USR 6909678 ENCODE Processing Pipeline e76170fcf20e7c8766dd4509b4c36b58 https://www.encodeproject.org/files/ENCFF610HTV/@@download/ENCFF610HTV.bed.gz hg19 released mild to moderate bottlenecking ENCFF924OFW bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF401WQB, ENCFF447KVS, ENCFF741WIH, ENCFF823USR 7142306 ENCODE Processing Pipeline eaeedb8219e0797511d30786720c468a https://www.encodeproject.org/files/ENCFF924OFW/@@download/ENCFF924OFW.bed.gz hg19 released mild to moderate bottlenecking ENCFF883QMB bigBed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF887ZYJ 10991704 ENCODE Processing Pipeline 00d183f634865fa33c5983341994e800 https://www.encodeproject.org/files/ENCFF883QMB/@@download/ENCFF883QMB.bigBed hg19 released mild to moderate bottlenecking ENCFF225OCB bigBed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF610HTV 10926725 ENCODE Processing Pipeline f2fc14da59fba0c34901cfa80cd371d8 https://www.encodeproject.org/files/ENCFF225OCB/@@download/ENCFF225OCB.bigBed hg19 released mild to moderate bottlenecking ENCFF650MST bigBed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF924OFW 10841009 ENCODE Processing Pipeline 714308c9328d1ff4ce94bb8a8bcea9d4 https://www.encodeproject.org/files/ENCFF650MST/@@download/ENCFF650MST.bigBed hg19 released mild to moderate bottlenecking ENCFF446FHX bed narrowPeak optimal idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF610HTV, ENCFF887ZYJ, ENCFF924OFW 27172 ENCODE Processing Pipeline 662ff52d399651dc17f01ed9a22ef122 https://www.encodeproject.org/files/ENCFF446FHX/@@download/ENCFF446FHX.bed.gz hg19 released mild to moderate bottlenecking ENCFF124YQT bigBed narrowPeak optimal idr thresholded peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF446FHX 106979 ENCODE Processing Pipeline 9759065948a1a551a55112ea196fbaec https://www.encodeproject.org/files/ENCFF124YQT/@@download/ENCFF124YQT.bigBed hg19 released mild to moderate bottlenecking ENCFF466MIW fastq reads ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 715090523 Xiang-Dong Fu, UCSD e690c01118415d31992676d81392510d SRA:SRR6214189 https://www.encodeproject.org/files/ENCFF466MIW/@@download/ENCFF466MIW.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, low read depth ENCFF110EDY fastq reads ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 675813758 Xiang-Dong Fu, UCSD 4fd64619a3524df0116d4c0f566a309a SRA:SRR6214190 https://www.encodeproject.org/files/ENCFF110EDY/@@download/ENCFF110EDY.fastq.gz Illumina HiSeq 2500 /files/ENCFF025UQF/ released low read length, low read depth ENCFF403WEJ bam unfiltered alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF110EDY, ENCFF807MUK 940541325 ENCODE Processing Pipeline 7440a07d10286d29e2ced77a8ce034ec https://www.encodeproject.org/files/ENCFF403WEJ/@@download/ENCFF403WEJ.bam hg19 released low read length, low read depth ENCFF551QCK bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF110EDY, ENCFF807MUK 594643035 ENCODE Processing Pipeline 035431d6db3a4437276f3d8a4adfea10 https://www.encodeproject.org/files/ENCFF551QCK/@@download/ENCFF551QCK.bam hg19 released low read length, low read depth ENCFF917XAY bam unfiltered alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF110EDY, ENCFF643CGH 943098778 ENCODE Processing Pipeline 8615c37e1304ef11834a69cd50223b4b https://www.encodeproject.org/files/ENCFF917XAY/@@download/ENCFF917XAY.bam GRCh38 released low read length, low read depth ENCFF157WFG bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF110EDY, ENCFF643CGH 593942400 ENCODE Processing Pipeline f051bf36dcc70c92832d5614f55ae7d8 https://www.encodeproject.org/files/ENCFF157WFG/@@download/ENCFF157WFG.bam GRCh38 released low read length, low read depth ENCFF546AFS bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF466MIW, ENCFF807MUK 634629540 ENCODE Processing Pipeline 6b5bf2a1dfa3db24e5b9c5a89b0f353a https://www.encodeproject.org/files/ENCFF546AFS/@@download/ENCFF546AFS.bam hg19 released low read length, low read depth ENCFF317XGT bam unfiltered alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF466MIW, ENCFF807MUK 996087134 ENCODE Processing Pipeline 46c50ba732dc96caac65e0e7cb29abd3 https://www.encodeproject.org/files/ENCFF317XGT/@@download/ENCFF317XGT.bam hg19 released low read length, low read depth ENCFF438HVZ bam unfiltered alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF466MIW, ENCFF643CGH 998969154 ENCODE Processing Pipeline d8331d50df4a297bac4480f9494af6f5 https://www.encodeproject.org/files/ENCFF438HVZ/@@download/ENCFF438HVZ.bam GRCh38 released low read length, low read depth ENCFF372NDR bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF466MIW, ENCFF643CGH 633932582 ENCODE Processing Pipeline 666656120a552574dacdea095fe265cd https://www.encodeproject.org/files/ENCFF372NDR/@@download/ENCFF372NDR.bam GRCh38 released low read length, low read depth ENCFF044JID bigWig fold change over control ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF477SGV, ENCFF551QCK 348227944 ENCODE Processing Pipeline a53797adb7ec458bcc83990311d0803d https://www.encodeproject.org/files/ENCFF044JID/@@download/ENCFF044JID.bigWig hg19 released low read length, low read depth ENCFF769MWV bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF477SGV, ENCFF551QCK 4718222 ENCODE Processing Pipeline 19256ba74f45415382b6ea8f51a7244a https://www.encodeproject.org/files/ENCFF769MWV/@@download/ENCFF769MWV.bed.gz hg19 released low read length, low read depth ENCFF833FDT bigWig signal p-value ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF546AFS, ENCFF705ZEH 514189913 ENCODE Processing Pipeline 55205cf822dd8231b8aa5b5d7ad997bb https://www.encodeproject.org/files/ENCFF833FDT/@@download/ENCFF833FDT.bigWig hg19 released low read length, low read depth ENCFF622THV bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF546AFS, ENCFF705ZEH 4834476 ENCODE Processing Pipeline a78791463de6509ad4f36b0cacb53445 https://www.encodeproject.org/files/ENCFF622THV/@@download/ENCFF622THV.bed.gz hg19 released low read length, low read depth ENCFF647LCC bigWig signal p-value ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF477SGV, ENCFF551QCK 416480113 ENCODE Processing Pipeline a67284f2fbd9cee5977fdf2bae84c449 https://www.encodeproject.org/files/ENCFF647LCC/@@download/ENCFF647LCC.bigWig hg19 released low read length, low read depth ENCFF989OXX bigWig fold change over control ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF477SGV, ENCFF546AFS, ENCFF551QCK, ENCFF705ZEH 798403378 ENCODE Processing Pipeline 9cd80ad41dc52f964b09d3bf427d0631 https://www.encodeproject.org/files/ENCFF989OXX/@@download/ENCFF989OXX.bigWig hg19 released low read length, low read depth ENCFF704ZRB bigBed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF626AAZ 13291997 ENCODE Processing Pipeline 0a2979cb440d9d3930dabc81bbd67e7b https://www.encodeproject.org/files/ENCFF704ZRB/@@download/ENCFF704ZRB.bigBed hg19 released low read length, low read depth ENCFF190QFS bigBed narrowPeak conservative idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF260IOV 106151 ENCODE Processing Pipeline c9a8b9f4962bd71f365da5cd63dd70f6 https://www.encodeproject.org/files/ENCFF190QFS/@@download/ENCFF190QFS.bigBed hg19 released low read length, low read depth ENCFF774YIJ bigWig signal p-value ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF477SGV, ENCFF546AFS, ENCFF551QCK, ENCFF705ZEH 861252699 ENCODE Processing Pipeline aabdf352eaa674f5b85b1766f61b84d1 https://www.encodeproject.org/files/ENCFF774YIJ/@@download/ENCFF774YIJ.bigWig hg19 released low read length, low read depth ENCFF978NDZ bigWig fold change over control ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF546AFS, ENCFF705ZEH 361651377 ENCODE Processing Pipeline 90c715b3fdcb969d328b8ef576038120 https://www.encodeproject.org/files/ENCFF978NDZ/@@download/ENCFF978NDZ.bigWig hg19 released low read length, low read depth ENCFF626AAZ bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF477SGV, ENCFF546AFS, ENCFF551QCK, ENCFF705ZEH 6248155 ENCODE Processing Pipeline 3c16a9fa34574cb39077b028da90d179 https://www.encodeproject.org/files/ENCFF626AAZ/@@download/ENCFF626AAZ.bed.gz hg19 released low read length, low read depth ENCFF166CCA bigBed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF769MWV 10752509 ENCODE Processing Pipeline 143d248c87cd346f22b1dd03a507572b https://www.encodeproject.org/files/ENCFF166CCA/@@download/ENCFF166CCA.bigBed hg19 released low read length, low read depth ENCFF152KZE bigBed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF622THV 10810877 ENCODE Processing Pipeline 41f2e4cd708f2a2f1bf353e093f3a643 https://www.encodeproject.org/files/ENCFF152KZE/@@download/ENCFF152KZE.bigBed hg19 released low read length, low read depth ENCFF260IOV bed narrowPeak conservative idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF622THV, ENCFF626AAZ, ENCFF769MWV 15938 ENCODE Processing Pipeline d8b65e9cb8984b6f9c549de80aa8b6ae https://www.encodeproject.org/files/ENCFF260IOV/@@download/ENCFF260IOV.bed.gz hg19 released low read length, low read depth ENCFF206MLH bigBed narrowPeak optimal idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF033KXY 110897 ENCODE Processing Pipeline d32fd83cbcb21157e24518be14c3543b https://www.encodeproject.org/files/ENCFF206MLH/@@download/ENCFF206MLH.bigBed hg19 released low read length, low read depth ENCFF033KXY bed narrowPeak optimal idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF622THV, ENCFF626AAZ, ENCFF769MWV 17570 ENCODE Processing Pipeline c90f03895f7cadf139446946d20832a2 https://www.encodeproject.org/files/ENCFF033KXY/@@download/ENCFF033KXY.bed.gz hg19 released low read length, low read depth ENCFF786WEP bigWig signal p-value ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF372NDR 428764078 ENCODE Processing Pipeline 8788aa4f25a37dfd83bd028659ccc6d1 https://www.encodeproject.org/files/ENCFF786WEP/@@download/ENCFF786WEP.bigWig GRCh38 released low read length, low read depth ENCFF362RUB bigWig signal p-value ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF157WFG, ENCFF308PSW 408799170 ENCODE Processing Pipeline e913a469738019edaff28fafac0a7bd7 https://www.encodeproject.org/files/ENCFF362RUB/@@download/ENCFF362RUB.bigWig GRCh38 released low read length, low read depth ENCFF800WMI bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF157WFG, ENCFF198JCQ, ENCFF308PSW, ENCFF372NDR 6174033 ENCODE Processing Pipeline f09ca1add0a3c8a3e067abfbd6b89d62 https://www.encodeproject.org/files/ENCFF800WMI/@@download/ENCFF800WMI.bed.gz GRCh38 released low read length, low read depth ENCFF105WKL bigWig signal p-value ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF157WFG, ENCFF198JCQ, ENCFF308PSW, ENCFF372NDR 905615341 ENCODE Processing Pipeline 7bef40121ba35fbe1d3686bd3fde61b2 https://www.encodeproject.org/files/ENCFF105WKL/@@download/ENCFF105WKL.bigWig GRCh38 released low read length, low read depth ENCFF996CLC bigWig fold change over control ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF157WFG, ENCFF308PSW 350217514 ENCODE Processing Pipeline e9dd2a2abd7842bc3263834b838aad74 https://www.encodeproject.org/files/ENCFF996CLC/@@download/ENCFF996CLC.bigWig GRCh38 released low read length, low read depth ENCFF586LJA bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF157WFG, ENCFF308PSW 4739769 ENCODE Processing Pipeline a6d62eb90700bcdbdf231a363865a1d7 https://www.encodeproject.org/files/ENCFF586LJA/@@download/ENCFF586LJA.bed.gz GRCh38 released low read length, low read depth ENCFF363KCU bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF372NDR 4768721 ENCODE Processing Pipeline 2395d1b3d24901d47d59648c74974b6d https://www.encodeproject.org/files/ENCFF363KCU/@@download/ENCFF363KCU.bed.gz GRCh38 released low read length, low read depth ENCFF896TLD bigBed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF586LJA 10762763 ENCODE Processing Pipeline e670d71357977499483d7e892d8bacec https://www.encodeproject.org/files/ENCFF896TLD/@@download/ENCFF896TLD.bigBed GRCh38 released low read length, low read depth ENCFF725OUP bigBed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF800WMI 13307560 ENCODE Processing Pipeline 6cc68de5ae981661b9dead7e2ee19d0f https://www.encodeproject.org/files/ENCFF725OUP/@@download/ENCFF725OUP.bigBed GRCh38 released low read length, low read depth ENCFF404SDU bigWig fold change over control ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF198JCQ, ENCFF372NDR 362469625 ENCODE Processing Pipeline c2b8cccebc07c42081ed6d6930fc99e4 https://www.encodeproject.org/files/ENCFF404SDU/@@download/ENCFF404SDU.bigWig GRCh38 released low read length, low read depth ENCFF962YWD bigWig fold change over control ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF157WFG, ENCFF198JCQ, ENCFF308PSW, ENCFF372NDR 779517377 ENCODE Processing Pipeline a9ea9b98fe2b5b64b2aaaf4f99dd9e0c https://www.encodeproject.org/files/ENCFF962YWD/@@download/ENCFF962YWD.bigWig GRCh38 released low read length, low read depth ENCFF206MJS bed narrowPeak optimal idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF363KCU, ENCFF419RSJ, ENCFF586LJA, ENCFF800WMI 15551 ENCODE Processing Pipeline 02b18c003378b3efe5b4b035dcd08b15 https://www.encodeproject.org/files/ENCFF206MJS/@@download/ENCFF206MJS.bed.gz GRCh38 released low read length, low read depth ENCFF470XDL bigBed narrowPeak optimal idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF206MJS 107452 ENCODE Processing Pipeline 40fb814940d439a21b1f9fac92466396 https://www.encodeproject.org/files/ENCFF470XDL/@@download/ENCFF470XDL.bigBed GRCh38 released low read length, low read depth ENCFF352GQK bigBed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF363KCU 10796853 ENCODE Processing Pipeline 59aef30ac75f7f5ee8b823eec2cd0b70 https://www.encodeproject.org/files/ENCFF352GQK/@@download/ENCFF352GQK.bigBed GRCh38 released low read length, low read depth ENCFF591EEZ bigBed narrowPeak conservative idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF012DPW 105040 ENCODE Processing Pipeline 63f1684281b420c1290dbb1245234c76 https://www.encodeproject.org/files/ENCFF591EEZ/@@download/ENCFF591EEZ.bigBed GRCh38 released low read length, low read depth ENCFF012DPW bed narrowPeak conservative idr thresholded peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF363KCU, ENCFF419RSJ, ENCFF586LJA, ENCFF800WMI 14943 ENCODE Processing Pipeline 519d0ea3ca46a1e1658b04d4753b082d https://www.encodeproject.org/files/ENCFF012DPW/@@download/ENCFF012DPW.bed.gz GRCh38 released low read length, low read depth ENCFF127RWF fastq reads ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 1 101 paired-ended 1 ENCFF718YAQ 2182728229 Michael Snyder, Stanford bba50d5f4bbea4a024c435b136329c4d https://www.encodeproject.org/files/ENCFF127RWF/@@download/ENCFF127RWF.fastq.gz Illumina HiSeq 4000 /files/ENCFF449TVW/ released experiment not submitted to GEO ENCFF718YAQ fastq reads ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 1 101 paired-ended 2 ENCFF127RWF 2300445281 Michael Snyder, Stanford c7ae1778cbd261bc00d2e50c9484eb2d https://www.encodeproject.org/files/ENCFF718YAQ/@@download/ENCFF718YAQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF869MDG/ released experiment not submitted to GEO ENCFF986FXN fastq reads ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 1 101 paired-ended 2 ENCFF256QXE 2104514907 Michael Snyder, Stanford ca647b6da03003c6345f3ff99b1b7ce1 https://www.encodeproject.org/files/ENCFF986FXN/@@download/ENCFF986FXN.fastq.gz Illumina HiSeq 4000 /files/ENCFF610OQN/ released experiment not submitted to GEO ENCFF256QXE fastq reads ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 1 101 paired-ended 1 ENCFF986FXN 1981053038 Michael Snyder, Stanford 0592fc827234051bd96e543714473c97 https://www.encodeproject.org/files/ENCFF256QXE/@@download/ENCFF256QXE.fastq.gz Illumina HiSeq 4000 /files/ENCFF171QVC/ released experiment not submitted to GEO ENCFF172VKG bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF256QXE, ENCFF643CGH, ENCFF986FXN 3054260712 ENCODE Processing Pipeline 9804f71a6b669a87ea1bc41e881127ca https://www.encodeproject.org/files/ENCFF172VKG/@@download/ENCFF172VKG.bam GRCh38 released experiment not submitted to GEO ENCFF116SEB bam unfiltered alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF127RWF, ENCFF718YAQ, ENCFF807MUK 4171683438 ENCODE Processing Pipeline d207c2b1c571a8754d6691421708c175 https://www.encodeproject.org/files/ENCFF116SEB/@@download/ENCFF116SEB.bam hg19 released experiment not submitted to GEO ENCFF222IFV bam unfiltered alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF127RWF, ENCFF643CGH, ENCFF718YAQ 4174754524 ENCODE Processing Pipeline 6ea3ffc94c78c5abade88d4d0e0bd6f8 https://www.encodeproject.org/files/ENCFF222IFV/@@download/ENCFF222IFV.bam GRCh38 released experiment not submitted to GEO ENCFF517ZGU bam unfiltered alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF256QXE, ENCFF643CGH, ENCFF986FXN 3856735171 ENCODE Processing Pipeline 9cc56162b8db0113e8ad10556c784c18 https://www.encodeproject.org/files/ENCFF517ZGU/@@download/ENCFF517ZGU.bam GRCh38 released experiment not submitted to GEO ENCFF697WPU bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF127RWF, ENCFF718YAQ, ENCFF807MUK 3307679291 ENCODE Processing Pipeline bfb4c7022210c46b3c649c1cbc317a63 https://www.encodeproject.org/files/ENCFF697WPU/@@download/ENCFF697WPU.bam hg19 released experiment not submitted to GEO ENCFF670OVZ bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF127RWF, ENCFF643CGH, ENCFF718YAQ 3310604531 ENCODE Processing Pipeline 178f6e68cc09b817e1a3f3a20ec82afa https://www.encodeproject.org/files/ENCFF670OVZ/@@download/ENCFF670OVZ.bam GRCh38 released experiment not submitted to GEO ENCFF043PQB bam unfiltered alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF256QXE, ENCFF807MUK, ENCFF986FXN 3853796712 ENCODE Processing Pipeline 16ffa082239ec655b5624192a63a0cd5 https://www.encodeproject.org/files/ENCFF043PQB/@@download/ENCFF043PQB.bam hg19 released experiment not submitted to GEO ENCFF609FMU bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF256QXE, ENCFF807MUK, ENCFF986FXN 3052479055 ENCODE Processing Pipeline fd3959435ed98d2512d6f818899ba79f https://www.encodeproject.org/files/ENCFF609FMU/@@download/ENCFF609FMU.bam hg19 released experiment not submitted to GEO ENCFF236MNS bigWig signal p-value ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF697WPU, ENCFF877SGM 1194626845 ENCODE Processing Pipeline 321d89cf2bf8f49639ded3a5f89327f9 https://www.encodeproject.org/files/ENCFF236MNS/@@download/ENCFF236MNS.bigWig hg19 released experiment not submitted to GEO ENCFF167OAM bigWig signal p-value ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF239POZ, ENCFF609FMU 1128236798 ENCODE Processing Pipeline 611e5b0f23df9f8460b4cf70ca8ea624 https://www.encodeproject.org/files/ENCFF167OAM/@@download/ENCFF167OAM.bigWig hg19 released experiment not submitted to GEO ENCFF501YLS bigWig signal p-value ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF239POZ, ENCFF609FMU, ENCFF697WPU, ENCFF877SGM 2012812059 ENCODE Processing Pipeline 355c0e743ab112f191c3c1f467101b95 https://www.encodeproject.org/files/ENCFF501YLS/@@download/ENCFF501YLS.bigWig hg19 released experiment not submitted to GEO ENCFF479XMY bigWig fold change over control ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF697WPU, ENCFF877SGM 1123640030 ENCODE Processing Pipeline c3c2f45e73cac9668dacf4b7c578c3c7 https://www.encodeproject.org/files/ENCFF479XMY/@@download/ENCFF479XMY.bigWig hg19 released experiment not submitted to GEO ENCFF629LPB bigWig fold change over control ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF239POZ, ENCFF609FMU 1090764100 ENCODE Processing Pipeline 8ad13c4ae8404aeeaa199fd45c5aee3c https://www.encodeproject.org/files/ENCFF629LPB/@@download/ENCFF629LPB.bigWig hg19 released experiment not submitted to GEO ENCFF049RKV bigWig fold change over control ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF239POZ, ENCFF609FMU, ENCFF697WPU, ENCFF877SGM 2125729547 ENCODE Processing Pipeline 1f5de9ad4fbee302bda579e9a90bcafd https://www.encodeproject.org/files/ENCFF049RKV/@@download/ENCFF049RKV.bigWig hg19 released experiment not submitted to GEO ENCFF956IFC bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF697WPU, ENCFF877SGM 6353375 ENCODE Processing Pipeline 266359c5c10dd17de84f8ac02cbd4840 https://www.encodeproject.org/files/ENCFF956IFC/@@download/ENCFF956IFC.bed.gz hg19 released experiment not submitted to GEO ENCFF128OKK bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF239POZ, ENCFF609FMU 6377846 ENCODE Processing Pipeline 02e42c7712ffde272e651acb9b49a7ab https://www.encodeproject.org/files/ENCFF128OKK/@@download/ENCFF128OKK.bed.gz hg19 released experiment not submitted to GEO ENCFF562OUS bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF239POZ, ENCFF609FMU, ENCFF697WPU, ENCFF877SGM 7079619 ENCODE Processing Pipeline 70ae34ccc016c8545f9e278b024af197 https://www.encodeproject.org/files/ENCFF562OUS/@@download/ENCFF562OUS.bed.gz hg19 released experiment not submitted to GEO ENCFF437WHF bigBed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF956IFC 11750549 ENCODE Processing Pipeline 37eb0d349247fd1c2f4cd2dc578ec15a https://www.encodeproject.org/files/ENCFF437WHF/@@download/ENCFF437WHF.bigBed hg19 released experiment not submitted to GEO ENCFF080PWH bigBed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF128OKK 14057797 ENCODE Processing Pipeline 8c6d825c304d69283405277a1e5cc218 https://www.encodeproject.org/files/ENCFF080PWH/@@download/ENCFF080PWH.bigBed hg19 released experiment not submitted to GEO ENCFF560MRR bigBed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF562OUS 14092741 ENCODE Processing Pipeline 2e71fa67d73edb6ea5be83e5d9b082ec https://www.encodeproject.org/files/ENCFF560MRR/@@download/ENCFF560MRR.bigBed hg19 released experiment not submitted to GEO ENCFF023IZV bed narrowPeak conservative idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF001TDO, ENCFF128OKK, ENCFF562OUS, ENCFF956IFC 982770 ENCODE Processing Pipeline 1adf721aff662944a231a5e83a634a7c https://www.encodeproject.org/files/ENCFF023IZV/@@download/ENCFF023IZV.bed.gz hg19 released experiment not submitted to GEO ENCFF319CXR bigBed narrowPeak conservative idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF023IZV 1978669 ENCODE Processing Pipeline 8ca689d6a79b642007c8c80be82e9eec https://www.encodeproject.org/files/ENCFF319CXR/@@download/ENCFF319CXR.bigBed hg19 released experiment not submitted to GEO ENCFF250ZAH bed narrowPeak optimal idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF001TDO, ENCFF128OKK, ENCFF562OUS, ENCFF956IFC 1009516 ENCODE Processing Pipeline 8c4b57e46695bb74b34ca789b2be01ad https://www.encodeproject.org/files/ENCFF250ZAH/@@download/ENCFF250ZAH.bed.gz hg19 released experiment not submitted to GEO ENCFF497YVB bigBed narrowPeak optimal idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF250ZAH 2025107 ENCODE Processing Pipeline 03c0256d1edbfbcd187f75a77d79a523 https://www.encodeproject.org/files/ENCFF497YVB/@@download/ENCFF497YVB.bigBed hg19 released experiment not submitted to GEO ENCFF283VPA bigWig signal p-value ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF172VKG, ENCFF280UBH 1140314088 ENCODE Processing Pipeline a5d0d18593324d7f94a4f12c08ff1b3a https://www.encodeproject.org/files/ENCFF283VPA/@@download/ENCFF283VPA.bigWig GRCh38 released experiment not submitted to GEO ENCFF822XRK bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF033ZGP, ENCFF670OVZ 6261338 ENCODE Processing Pipeline 8ca5e86220708f4f66ded34f2f3152b3 https://www.encodeproject.org/files/ENCFF822XRK/@@download/ENCFF822XRK.bed.gz GRCh38 released experiment not submitted to GEO ENCFF202RRV bigBed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF482LGP 13998227 ENCODE Processing Pipeline d452a89a3b042216558afb42fec213d1 https://www.encodeproject.org/files/ENCFF202RRV/@@download/ENCFF202RRV.bigBed GRCh38 released experiment not submitted to GEO ENCFF593BCW bigBed narrowPeak optimal idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF349RNE 1987018 ENCODE Processing Pipeline 72a53254f40b11c8da26ad94846d1cde https://www.encodeproject.org/files/ENCFF593BCW/@@download/ENCFF593BCW.bigBed GRCh38 released experiment not submitted to GEO ENCFF622TNR bigWig signal p-value ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF033ZGP, ENCFF670OVZ 1239445023 ENCODE Processing Pipeline d4e15e3ce313d8f86182ada37075583a https://www.encodeproject.org/files/ENCFF622TNR/@@download/ENCFF622TNR.bigWig GRCh38 released experiment not submitted to GEO ENCFF230SOA bigWig signal p-value ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF033ZGP, ENCFF172VKG, ENCFF280UBH, ENCFF670OVZ 2124053071 ENCODE Processing Pipeline a2d0fa292cdaeeed24a8f40cfe396d03 https://www.encodeproject.org/files/ENCFF230SOA/@@download/ENCFF230SOA.bigWig GRCh38 released experiment not submitted to GEO ENCFF093IZZ bigWig fold change over control ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF033ZGP, ENCFF670OVZ 1123225431 ENCODE Processing Pipeline b32c2df0d2f0fdb2a036205e8ca062ab https://www.encodeproject.org/files/ENCFF093IZZ/@@download/ENCFF093IZZ.bigWig GRCh38 released experiment not submitted to GEO ENCFF291VJC bigWig fold change over control ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF172VKG, ENCFF280UBH 1092001960 ENCODE Processing Pipeline b562d76dadf16edfb674b0e41ed6ec81 https://www.encodeproject.org/files/ENCFF291VJC/@@download/ENCFF291VJC.bigWig GRCh38 released experiment not submitted to GEO ENCFF243TJG bigWig fold change over control ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF033ZGP, ENCFF172VKG, ENCFF280UBH, ENCFF670OVZ 2124325206 ENCODE Processing Pipeline a2e0d3bc8c8913118f1afea10bf5f4c1 https://www.encodeproject.org/files/ENCFF243TJG/@@download/ENCFF243TJG.bigWig GRCh38 released experiment not submitted to GEO ENCFF941YYK bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF172VKG, ENCFF280UBH 6367683 ENCODE Processing Pipeline b65d7b9b575cb8c02c01e6674bef91fc https://www.encodeproject.org/files/ENCFF941YYK/@@download/ENCFF941YYK.bed.gz GRCh38 released experiment not submitted to GEO ENCFF482LGP bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF033ZGP, ENCFF172VKG, ENCFF280UBH, ENCFF670OVZ 6990286 ENCODE Processing Pipeline c3da43b14f5e51de48dc218842855ce0 https://www.encodeproject.org/files/ENCFF482LGP/@@download/ENCFF482LGP.bed.gz GRCh38 released experiment not submitted to GEO ENCFF986MNP bigBed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF822XRK 11651818 ENCODE Processing Pipeline 3830c3e9ee8bdaa12d0980135f9883b7 https://www.encodeproject.org/files/ENCFF986MNP/@@download/ENCFF986MNP.bigBed GRCh38 released experiment not submitted to GEO ENCFF523NJR bigBed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF941YYK 14061969 ENCODE Processing Pipeline 21597db3b87d63b651a1e4fe984dc0ae https://www.encodeproject.org/files/ENCFF523NJR/@@download/ENCFF523NJR.bigBed GRCh38 released experiment not submitted to GEO ENCFF954XNA bed narrowPeak conservative idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF419RSJ, ENCFF482LGP, ENCFF822XRK, ENCFF941YYK 959120 ENCODE Processing Pipeline 36538a31a0a5f845ed67d8bcb7665680 https://www.encodeproject.org/files/ENCFF954XNA/@@download/ENCFF954XNA.bed.gz GRCh38 released experiment not submitted to GEO ENCFF611EAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF954XNA 1940518 ENCODE Processing Pipeline d3f2b8aac11bca2f4b5f649ba8433ab9 https://www.encodeproject.org/files/ENCFF611EAQ/@@download/ENCFF611EAQ.bigBed GRCh38 released experiment not submitted to GEO ENCFF349RNE bed narrowPeak optimal idr thresholded peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1, 2 ENCFF419RSJ, ENCFF482LGP, ENCFF822XRK, ENCFF941YYK 986194 ENCODE Processing Pipeline 0e4bdf0d5f892839ecb7e9c9cf29eb80 https://www.encodeproject.org/files/ENCFF349RNE/@@download/ENCFF349RNE.bed.gz GRCh38 released experiment not submitted to GEO ENCFF832CXC fastq reads ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF160RVI 2151198546 Michael Snyder, Stanford 6488fdba16e50a2b4eb5a6bc3a5029ab SRA:SRR6213657 https://www.encodeproject.org/files/ENCFF832CXC/@@download/ENCFF832CXC.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released ENCFF091KYM fastq reads ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF556XVA 3022479780 Michael Snyder, Stanford ddda5cb3aafbd45d1e2729f87021d1b6 SRA:SRR6213658 https://www.encodeproject.org/files/ENCFF091KYM/@@download/ENCFF091KYM.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released ENCFF160RVI fastq reads ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF832CXC 2554328880 Michael Snyder, Stanford 0d42e8a518db3e52e830330b2ca35051 SRA:SRR6213657 https://www.encodeproject.org/files/ENCFF160RVI/@@download/ENCFF160RVI.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released ENCFF556XVA fastq reads ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF091KYM 3541103616 Michael Snyder, Stanford 801d31d82da0ea8146b6c64e8fd42e5e SRA:SRR6213658 https://www.encodeproject.org/files/ENCFF556XVA/@@download/ENCFF556XVA.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released ENCFF554XHJ bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF160RVI, ENCFF807MUK, ENCFF832CXC 3926366931 ENCODE Processing Pipeline 8e7fec0c0f33f1956593de636b28961c https://www.encodeproject.org/files/ENCFF554XHJ/@@download/ENCFF554XHJ.bam hg19 released ENCFF787DHM bam unfiltered alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF160RVI, ENCFF807MUK, ENCFF832CXC 4735762684 ENCODE Processing Pipeline a7e28b2d0d79478410a1bf737d4ab89b https://www.encodeproject.org/files/ENCFF787DHM/@@download/ENCFF787DHM.bam hg19 released ENCFF121ZXY bam unfiltered alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF091KYM, ENCFF556XVA, ENCFF807MUK 6408992916 ENCODE Processing Pipeline 478b35675cf079c09628533d46fe25ca https://www.encodeproject.org/files/ENCFF121ZXY/@@download/ENCFF121ZXY.bam hg19 released ENCFF654ZRK bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF091KYM, ENCFF556XVA, ENCFF807MUK 5425199864 ENCODE Processing Pipeline 6f2cec31f1409dd18474746d59b05154 https://www.encodeproject.org/files/ENCFF654ZRK/@@download/ENCFF654ZRK.bam hg19 released ENCFF929HOD bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF160RVI, ENCFF643CGH, ENCFF832CXC 3932158263 ENCODE Processing Pipeline 8646abaa9a3124fe215790a98b3b617f https://www.encodeproject.org/files/ENCFF929HOD/@@download/ENCFF929HOD.bam GRCh38 released ENCFF144UJH bam unfiltered alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF160RVI, ENCFF643CGH, ENCFF832CXC 4751648705 ENCODE Processing Pipeline 724512764e5f3b25e52c327d97722cef https://www.encodeproject.org/files/ENCFF144UJH/@@download/ENCFF144UJH.bam GRCh38 released ENCFF576BBF bam unfiltered alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF091KYM, ENCFF556XVA, ENCFF643CGH 6427587287 ENCODE Processing Pipeline a585b4a428fad3ae4cf47943f6e36eaa https://www.encodeproject.org/files/ENCFF576BBF/@@download/ENCFF576BBF.bam GRCh38 released ENCFF397CSO bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF091KYM, ENCFF556XVA, ENCFF643CGH 5433458132 ENCODE Processing Pipeline d7eb5f605a36961a0127d202cc5b8ab2 https://www.encodeproject.org/files/ENCFF397CSO/@@download/ENCFF397CSO.bam GRCh38 released ENCFF701XTC bigWig fold change over control ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF397CSO, ENCFF746SKT 1855301857 ENCODE Processing Pipeline 20996e71454a1f44faaebffba5f14f47 https://www.encodeproject.org/files/ENCFF701XTC/@@download/ENCFF701XTC.bigWig GRCh38 released ENCFF111DWD bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF397CSO, ENCFF746SKT 6544786 ENCODE Processing Pipeline 071bbdccb469100b39c596cfa4325708 https://www.encodeproject.org/files/ENCFF111DWD/@@download/ENCFF111DWD.bed.gz GRCh38 released ENCFF335JXK bigWig signal p-value ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF191XYH, ENCFF397CSO, ENCFF746SKT 1850205414 ENCODE Processing Pipeline 5a03334fd554eaaa4d0fef7f50625665 https://www.encodeproject.org/files/ENCFF335JXK/@@download/ENCFF335JXK.bigWig GRCh38 released ENCFF649LML bigWig fold change over control ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF929HOD 1564048838 ENCODE Processing Pipeline 0ddad3c30ab6a603a3268cc351c3c537 https://www.encodeproject.org/files/ENCFF649LML/@@download/ENCFF649LML.bigWig GRCh38 released ENCFF575OJE bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF929HOD 6522118 ENCODE Processing Pipeline 600c51fe33d68782b3ac9ab80595eacc https://www.encodeproject.org/files/ENCFF575OJE/@@download/ENCFF575OJE.bed.gz GRCh38 released ENCFF074HCC bigWig signal p-value ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF929HOD 1457239115 ENCODE Processing Pipeline 0bf7af2f19e8d0f73476edf944da18b5 https://www.encodeproject.org/files/ENCFF074HCC/@@download/ENCFF074HCC.bigWig GRCh38 released ENCFF822RFB bigBed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF111DWD 11162690 ENCODE Processing Pipeline 5b27e189fa54cbaa8301adecee87964c https://www.encodeproject.org/files/ENCFF822RFB/@@download/ENCFF822RFB.bigBed GRCh38 released ENCFF403BWK bed narrowPeak optimal idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF111DWD, ENCFF419RSJ, ENCFF575OJE, ENCFF937QNN 24228 ENCODE Processing Pipeline 0deee7e339c9f72cba07ca8a4a0850dc https://www.encodeproject.org/files/ENCFF403BWK/@@download/ENCFF403BWK.bed.gz GRCh38 released ENCFF999KLC bigBed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF575OJE 11149011 ENCODE Processing Pipeline 8901538730388598af151516a6a46ec4 https://www.encodeproject.org/files/ENCFF999KLC/@@download/ENCFF999KLC.bigBed GRCh38 released ENCFF292HGR bigBed narrowPeak conservative idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF685CFF 96439 ENCODE Processing Pipeline e2b3e000e7180b887379acb7242efe4a https://www.encodeproject.org/files/ENCFF292HGR/@@download/ENCFF292HGR.bigBed GRCh38 released ENCFF925UYE bigBed narrowPeak optimal idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF403BWK 105875 ENCODE Processing Pipeline 329e21fc70d1b2e69a38f6e32b16794f https://www.encodeproject.org/files/ENCFF925UYE/@@download/ENCFF925UYE.bigBed GRCh38 released ENCFF742VLX bigWig signal p-value ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF191XYH, ENCFF397CSO, ENCFF746SKT, ENCFF929HOD 2288962413 ENCODE Processing Pipeline d000d0675b516e7602599c32fd786551 https://www.encodeproject.org/files/ENCFF742VLX/@@download/ENCFF742VLX.bigWig GRCh38 released ENCFF257PJW bigWig fold change over control ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF191XYH, ENCFF397CSO, ENCFF746SKT, ENCFF929HOD 2349866430 ENCODE Processing Pipeline 763fb3208245473995671cbe920484ae https://www.encodeproject.org/files/ENCFF257PJW/@@download/ENCFF257PJW.bigWig GRCh38 released ENCFF085FIE bigBed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF937QNN 10984295 ENCODE Processing Pipeline b4467e4329de93bcdcbc9f5525b0204f https://www.encodeproject.org/files/ENCFF085FIE/@@download/ENCFF085FIE.bigBed GRCh38 released ENCFF937QNN bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF191XYH, ENCFF397CSO, ENCFF746SKT, ENCFF929HOD 7123488 ENCODE Processing Pipeline d5bb450d0bb0c5293856a2fa3ea6f9cd https://www.encodeproject.org/files/ENCFF937QNN/@@download/ENCFF937QNN.bed.gz GRCh38 released ENCFF685CFF bed narrowPeak conservative idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF111DWD, ENCFF419RSJ, ENCFF575OJE, ENCFF937QNN 13651 ENCODE Processing Pipeline 9b78fe54922c7b633d0d3dd89f24edfc https://www.encodeproject.org/files/ENCFF685CFF/@@download/ENCFF685CFF.bed.gz GRCh38 released ENCFF613GHJ bigWig fold change over control ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF554XHJ, ENCFF823USR 1558696518 ENCODE Processing Pipeline 878165f9706a3f86fa63b86a4ecc9260 https://www.encodeproject.org/files/ENCFF613GHJ/@@download/ENCFF613GHJ.bigWig hg19 released ENCFF365WYT bigWig fold change over control ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF654ZRK, ENCFF823USR 1846996891 ENCODE Processing Pipeline b85ec3cb924c8916c83893bf0046c1f4 https://www.encodeproject.org/files/ENCFF365WYT/@@download/ENCFF365WYT.bigWig hg19 released ENCFF600NIF bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF447KVS, ENCFF554XHJ, ENCFF654ZRK, ENCFF823USR 7116845 ENCODE Processing Pipeline 181649d016cd059548118fe3aafde930 https://www.encodeproject.org/files/ENCFF600NIF/@@download/ENCFF600NIF.bed.gz hg19 released ENCFF665QIV bigBed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF978HRR 11138921 ENCODE Processing Pipeline 4f4b7913f76fe236a1cc2e70cd2ae0fe https://www.encodeproject.org/files/ENCFF665QIV/@@download/ENCFF665QIV.bigBed hg19 released ENCFF021XXQ bigWig signal p-value ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF554XHJ, ENCFF823USR 1585672681 ENCODE Processing Pipeline ad43dafb28ecd49e074c5b8e87ab28d9 https://www.encodeproject.org/files/ENCFF021XXQ/@@download/ENCFF021XXQ.bigWig hg19 released ENCFF874HJK bigWig fold change over control ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF447KVS, ENCFF554XHJ, ENCFF654ZRK, ENCFF823USR 2312615539 ENCODE Processing Pipeline 441a79ed8ad813c3f6af7e7598d0eddd https://www.encodeproject.org/files/ENCFF874HJK/@@download/ENCFF874HJK.bigWig hg19 released ENCFF780FQB bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF554XHJ, ENCFF823USR 6517013 ENCODE Processing Pipeline 3f5be1ab94c5bb313152ebd9d77f9c8a https://www.encodeproject.org/files/ENCFF780FQB/@@download/ENCFF780FQB.bed.gz hg19 released ENCFF464VSE bigBed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF600NIF 10960701 ENCODE Processing Pipeline a7ddbadca6233efabbbb3d1fcf88e724 https://www.encodeproject.org/files/ENCFF464VSE/@@download/ENCFF464VSE.bigBed hg19 released ENCFF620BCJ bed narrowPeak conservative idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF600NIF, ENCFF780FQB, ENCFF978HRR 14288 ENCODE Processing Pipeline cf7d9f0c1350aa96397b9acbeb04fa8b https://www.encodeproject.org/files/ENCFF620BCJ/@@download/ENCFF620BCJ.bed.gz hg19 released ENCFF886AJF bigWig signal p-value ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF447KVS, ENCFF554XHJ, ENCFF654ZRK, ENCFF823USR 2263141658 ENCODE Processing Pipeline 0e2bcc91b51f7f43174aa7e109c2a11f https://www.encodeproject.org/files/ENCFF886AJF/@@download/ENCFF886AJF.bigWig hg19 released ENCFF220JRM bigWig signal p-value ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF654ZRK, ENCFF823USR 1830722355 ENCODE Processing Pipeline cfff75ff9d05a9990f182991b6f1e525 https://www.encodeproject.org/files/ENCFF220JRM/@@download/ENCFF220JRM.bigWig hg19 released ENCFF978HRR bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF654ZRK, ENCFF823USR 6539705 ENCODE Processing Pipeline 05d47f16d247a0449ba74ddc1fa67e1b https://www.encodeproject.org/files/ENCFF978HRR/@@download/ENCFF978HRR.bed.gz hg19 released ENCFF822GEG bigBed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF780FQB 11131264 ENCODE Processing Pipeline ef05b40f2df37a92adc8f44287976ed7 https://www.encodeproject.org/files/ENCFF822GEG/@@download/ENCFF822GEG.bigBed hg19 released ENCFF807MPY bigBed narrowPeak conservative idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF620BCJ 93975 ENCODE Processing Pipeline f93b03dbca1a9b86e63b531f75d24a03 https://www.encodeproject.org/files/ENCFF807MPY/@@download/ENCFF807MPY.bigBed hg19 released ENCFF027CYL bed narrowPeak optimal idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF600NIF, ENCFF780FQB, ENCFF978HRR 23359 ENCODE Processing Pipeline 16be5a6879f034e9b5c4b6d81d2d3fdc https://www.encodeproject.org/files/ENCFF027CYL/@@download/ENCFF027CYL.bed.gz hg19 released ENCFF432UZH bigBed narrowPeak optimal idr thresholded peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF027CYL 99673 ENCODE Processing Pipeline 834a7777a86347b7b95b5dc64492bdb3 https://www.encodeproject.org/files/ENCFF432UZH/@@download/ENCFF432UZH.bigBed hg19 released ENCFF139SOU fastq reads ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF434PLO 2170911901 Michael Snyder, Stanford 7b6856632dcd180d54101839336bbee0 SRA:SRR6213940 https://www.encodeproject.org/files/ENCFF139SOU/@@download/ENCFF139SOU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance ENCFF032QDB fastq reads ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF638OLJ 2608317327 Michael Snyder, Stanford 32d1033fa579866c98a94b92d79fc208 SRA:SRR6213941 https://www.encodeproject.org/files/ENCFF032QDB/@@download/ENCFF032QDB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance ENCFF638OLJ fastq reads ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF032QDB 2574026618 Michael Snyder, Stanford bc7f3b676848e914402c6492fe8dd875 SRA:SRR6213941 https://www.encodeproject.org/files/ENCFF638OLJ/@@download/ENCFF638OLJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance ENCFF434PLO fastq reads ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF139SOU 2142427816 Michael Snyder, Stanford 2b72346fc571ef83c3850647bb155e23 SRA:SRR6213940 https://www.encodeproject.org/files/ENCFF434PLO/@@download/ENCFF434PLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance ENCFF956JYJ bam unfiltered alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF139SOU, ENCFF434PLO, ENCFF807MUK 4673528462 ENCODE Processing Pipeline 2d67ad6e57cc58c369c2b185e20de82c https://www.encodeproject.org/files/ENCFF956JYJ/@@download/ENCFF956JYJ.bam hg19 released borderline replicate concordance ENCFF412LRS bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF139SOU, ENCFF434PLO, ENCFF807MUK 3839630593 ENCODE Processing Pipeline 4f262aaa67fe26bfe8f7bba66dcea831 https://www.encodeproject.org/files/ENCFF412LRS/@@download/ENCFF412LRS.bam hg19 released borderline replicate concordance ENCFF852HQJ bam unfiltered alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF139SOU, ENCFF434PLO, ENCFF643CGH 4677060665 ENCODE Processing Pipeline 961d5fca7d1912cbf8c8463379082477 https://www.encodeproject.org/files/ENCFF852HQJ/@@download/ENCFF852HQJ.bam GRCh38 released borderline replicate concordance ENCFF241GJI bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF139SOU, ENCFF434PLO, ENCFF643CGH 3841999035 ENCODE Processing Pipeline e3660e1d174cbb602701af35f3443c2e https://www.encodeproject.org/files/ENCFF241GJI/@@download/ENCFF241GJI.bam GRCh38 released borderline replicate concordance ENCFF950LGW bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF032QDB, ENCFF638OLJ, ENCFF807MUK 4656975559 ENCODE Processing Pipeline 5aa2a4f1f5ee766f3690a1c7f3e882b1 https://www.encodeproject.org/files/ENCFF950LGW/@@download/ENCFF950LGW.bam hg19 released borderline replicate concordance ENCFF352HJD bam unfiltered alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF032QDB, ENCFF638OLJ, ENCFF807MUK 5615875744 ENCODE Processing Pipeline 29f8f259e65c83f8a10ecc701d7bc32d https://www.encodeproject.org/files/ENCFF352HJD/@@download/ENCFF352HJD.bam hg19 released borderline replicate concordance ENCFF838ZKA bam unfiltered alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF032QDB, ENCFF638OLJ, ENCFF643CGH 5621754365 ENCODE Processing Pipeline a869133452ddbbc46001143581c91ef9 https://www.encodeproject.org/files/ENCFF838ZKA/@@download/ENCFF838ZKA.bam GRCh38 released borderline replicate concordance ENCFF647FZE bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF032QDB, ENCFF638OLJ, ENCFF643CGH 4660087292 ENCODE Processing Pipeline e8cff35f5db71542f07f15b8cb5119fd https://www.encodeproject.org/files/ENCFF647FZE/@@download/ENCFF647FZE.bam GRCh38 released borderline replicate concordance ENCFF985JCJ bigWig signal p-value ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF241GJI, ENCFF910IKB 1004292431 ENCODE Processing Pipeline 994a4e48338a341bf38b2755dd4b3fc5 https://www.encodeproject.org/files/ENCFF985JCJ/@@download/ENCFF985JCJ.bigWig GRCh38 released borderline replicate concordance ENCFF609KNT bigWig fold change over control ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF241GJI, ENCFF910IKB 1085917103 ENCODE Processing Pipeline 9d39d5a0694ea6051dffe5eeb299e9d5 https://www.encodeproject.org/files/ENCFF609KNT/@@download/ENCFF609KNT.bigWig GRCh38 released borderline replicate concordance ENCFF183BBE bigWig signal p-value ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF647FZE 1113946949 ENCODE Processing Pipeline d6f8ef0052b7f9c519bf18411fe4ad18 https://www.encodeproject.org/files/ENCFF183BBE/@@download/ENCFF183BBE.bigWig GRCh38 released borderline replicate concordance ENCFF433GGH bigWig signal p-value ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF241GJI, ENCFF647FZE, ENCFF910IKB 2127378943 ENCODE Processing Pipeline 8681b35a4ee017bb15d5a4dda24f7a7e https://www.encodeproject.org/files/ENCFF433GGH/@@download/ENCFF433GGH.bigWig GRCh38 released borderline replicate concordance ENCFF159XBD bigWig fold change over control ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF647FZE 1149914164 ENCODE Processing Pipeline 81c22ab841d1961a74bf88efeb96d2d6 https://www.encodeproject.org/files/ENCFF159XBD/@@download/ENCFF159XBD.bigWig GRCh38 released borderline replicate concordance ENCFF132APO bigWig fold change over control ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF241GJI, ENCFF647FZE, ENCFF910IKB 2086641705 ENCODE Processing Pipeline 427e8ece2ce4f28a5c7dc7620b27ea80 https://www.encodeproject.org/files/ENCFF132APO/@@download/ENCFF132APO.bigWig GRCh38 released borderline replicate concordance ENCFF842YAM bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF241GJI, ENCFF910IKB 6959549 ENCODE Processing Pipeline 9027af2dd3fe4d3989281e196936e643 https://www.encodeproject.org/files/ENCFF842YAM/@@download/ENCFF842YAM.bed.gz GRCh38 released borderline replicate concordance ENCFF411DEF bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF647FZE 6715667 ENCODE Processing Pipeline 8bba1fe00b543f5a7d80e5f2d0c513bc https://www.encodeproject.org/files/ENCFF411DEF/@@download/ENCFF411DEF.bed.gz GRCh38 released borderline replicate concordance ENCFF362MSS bigBed narrowPeak conservative idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF843MEU 481301 ENCODE Processing Pipeline 9ffddc589a5924c4400ed0fdfbff1e6f https://www.encodeproject.org/files/ENCFF362MSS/@@download/ENCFF362MSS.bigBed GRCh38 released borderline replicate concordance ENCFF161QXX bigBed narrowPeak optimal idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF801KEW 699952 ENCODE Processing Pipeline 19d4147bfae6e833b7a9cf1ed214a16c https://www.encodeproject.org/files/ENCFF161QXX/@@download/ENCFF161QXX.bigBed GRCh38 released borderline replicate concordance ENCFF889ODV bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF241GJI, ENCFF647FZE, ENCFF910IKB 7252384 ENCODE Processing Pipeline fcf4c685721726eb4482913caf594c51 https://www.encodeproject.org/files/ENCFF889ODV/@@download/ENCFF889ODV.bed.gz GRCh38 released borderline replicate concordance ENCFF334TNK bigBed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF002ZRH 12981046 ENCODE Processing Pipeline 9113b8cff56fc10bb333f2f8bf93ca82 https://www.encodeproject.org/files/ENCFF334TNK/@@download/ENCFF334TNK.bigBed GRCh38 released borderline replicate concordance ENCFF801KEW bed narrowPeak optimal idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF002ZRH, ENCFF411DEF, ENCFF419RSJ, ENCFF724MJA 335713 ENCODE Processing Pipeline 2b67efa03e5a670d42fcb599b73d4122 https://www.encodeproject.org/files/ENCFF801KEW/@@download/ENCFF801KEW.bed.gz GRCh38 released borderline replicate concordance ENCFF816XPK bigBed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF724MJA 13013199 ENCODE Processing Pipeline bfcf2b00d0a1b1f78ccbcee31e7e1365 https://www.encodeproject.org/files/ENCFF816XPK/@@download/ENCFF816XPK.bigBed GRCh38 released borderline replicate concordance ENCFF843MEU bed narrowPeak conservative idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF002ZRH, ENCFF411DEF, ENCFF419RSJ, ENCFF724MJA 198575 ENCODE Processing Pipeline 1db4df0b0089fadf4b6468b67890deff https://www.encodeproject.org/files/ENCFF843MEU/@@download/ENCFF843MEU.bed.gz GRCh38 released borderline replicate concordance ENCFF937SJT bigBed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF411DEF 13284153 ENCODE Processing Pipeline 50e25d9bb9d3adf3d594236ed8912ac3 https://www.encodeproject.org/files/ENCFF937SJT/@@download/ENCFF937SJT.bigBed GRCh38 released borderline replicate concordance ENCFF724MJA bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF241GJI, ENCFF910IKB 6959549 ENCODE Processing Pipeline e73af50fb431a48550eb58cc31b3fffd https://www.encodeproject.org/files/ENCFF724MJA/@@download/ENCFF724MJA.bed.gz GRCh38 released borderline replicate concordance ENCFF002ZRH bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF241GJI, ENCFF647FZE, ENCFF910IKB 7252384 ENCODE Processing Pipeline 731228a3c1acb8f944968956491a282c https://www.encodeproject.org/files/ENCFF002ZRH/@@download/ENCFF002ZRH.bed.gz GRCh38 released borderline replicate concordance ENCFF494BQL bigBed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF387NDE 13008885 ENCODE Processing Pipeline 49becef4d91aac4f754c004cbba33eb9 https://www.encodeproject.org/files/ENCFF494BQL/@@download/ENCFF494BQL.bigBed hg19 released borderline replicate concordance ENCFF407VAS bed narrowPeak conservative idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF253PLF, ENCFF387NDE, ENCFF658ZHZ 199852 ENCODE Processing Pipeline 6f75192193f0a2bef5ddc99e7a21e518 https://www.encodeproject.org/files/ENCFF407VAS/@@download/ENCFF407VAS.bed.gz hg19 released borderline replicate concordance ENCFF769GYG bed narrowPeak optimal idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF253PLF, ENCFF387NDE, ENCFF658ZHZ 334404 ENCODE Processing Pipeline 9721f8e11cc0a98b2e92a7ee4f682542 https://www.encodeproject.org/files/ENCFF769GYG/@@download/ENCFF769GYG.bed.gz hg19 released borderline replicate concordance ENCFF153TPZ bigWig signal p-value ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF412LRS, ENCFF581ZJL 1126369034 ENCODE Processing Pipeline 7ae9a042583264d5b75745fb87249419 https://www.encodeproject.org/files/ENCFF153TPZ/@@download/ENCFF153TPZ.bigWig hg19 released borderline replicate concordance ENCFF535IWD bigWig fold change over control ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF412LRS, ENCFF581ZJL 1083565072 ENCODE Processing Pipeline 0fe3a32d18c56b9f8ec1a0e71f404afb https://www.encodeproject.org/files/ENCFF535IWD/@@download/ENCFF535IWD.bigWig hg19 released borderline replicate concordance ENCFF433PDE bigWig fold change over control ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF950LGW 1146551461 ENCODE Processing Pipeline 81bc19fa677b1f15402f2faff306eac5 https://www.encodeproject.org/files/ENCFF433PDE/@@download/ENCFF433PDE.bigWig hg19 released borderline replicate concordance ENCFF253PLF bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF950LGW 6719475 ENCODE Processing Pipeline f3894190ca5645019fbfae164354c932 https://www.encodeproject.org/files/ENCFF253PLF/@@download/ENCFF253PLF.bed.gz hg19 released borderline replicate concordance ENCFF056TVE bigBed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF658ZHZ 12969894 ENCODE Processing Pipeline dae1f95119a9fb7649f7a71db3574d5c https://www.encodeproject.org/files/ENCFF056TVE/@@download/ENCFF056TVE.bigBed hg19 released borderline replicate concordance ENCFF673AXH bigWig signal p-value ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF950LGW 1149072544 ENCODE Processing Pipeline fc4746a61913b72a09f715a5df7ad2f1 https://www.encodeproject.org/files/ENCFF673AXH/@@download/ENCFF673AXH.bigWig hg19 released borderline replicate concordance ENCFF387NDE bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF412LRS, ENCFF581ZJL 6967086 ENCODE Processing Pipeline 36aa5a16f94265a8106622b095f3da35 https://www.encodeproject.org/files/ENCFF387NDE/@@download/ENCFF387NDE.bed.gz hg19 released borderline replicate concordance ENCFF658ZHZ bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF412LRS, ENCFF581ZJL, ENCFF950LGW 7251771 ENCODE Processing Pipeline c420bf9bfec2cbbaec23f1b7ad1dc794 https://www.encodeproject.org/files/ENCFF658ZHZ/@@download/ENCFF658ZHZ.bed.gz hg19 released borderline replicate concordance ENCFF445RPZ bigWig signal p-value ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF412LRS, ENCFF581ZJL, ENCFF950LGW 1887812738 ENCODE Processing Pipeline 5cf96786a009e79be07167bf2c9b5779 https://www.encodeproject.org/files/ENCFF445RPZ/@@download/ENCFF445RPZ.bigWig hg19 released borderline replicate concordance ENCFF194ZGF bigWig fold change over control ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF412LRS, ENCFF581ZJL, ENCFF950LGW 2044656424 ENCODE Processing Pipeline a0d1369669381bc8fbb399181271a27c https://www.encodeproject.org/files/ENCFF194ZGF/@@download/ENCFF194ZGF.bigWig hg19 released borderline replicate concordance ENCFF993BZU bigBed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF253PLF 13271677 ENCODE Processing Pipeline 65667cf0beda8f0369cb42ca16119a6e https://www.encodeproject.org/files/ENCFF993BZU/@@download/ENCFF993BZU.bigBed hg19 released borderline replicate concordance ENCFF180XEU bigBed narrowPeak conservative idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF407VAS 480875 ENCODE Processing Pipeline a7c79958c5bd333b42cfc4171f9bf7fd https://www.encodeproject.org/files/ENCFF180XEU/@@download/ENCFF180XEU.bigBed hg19 released borderline replicate concordance ENCFF845IDA bigBed narrowPeak optimal idr thresholded peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF769GYG 694073 ENCODE Processing Pipeline 829bc741ec2691e24f4a285d81637993 https://www.encodeproject.org/files/ENCFF845IDA/@@download/ENCFF845IDA.bigBed hg19 released borderline replicate concordance ENCFF483MLV fastq reads ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF745ORG 2180006470 Richard Myers, HAIB fdafdd18ce21e2662e0c08fd05eefa46 https://www.encodeproject.org/files/ENCFF483MLV/@@download/ENCFF483MLV.fastq.gz Illumina HiSeq 2000 /files/ENCFF371ASL/ released antibody characterized with exemption experiment not submitted to GEO ENCFF745ORG fastq reads ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF483MLV 2270664739 Richard Myers, HAIB fc02a457ec0c306f0021960ee56e105a https://www.encodeproject.org/files/ENCFF745ORG/@@download/ENCFF745ORG.fastq.gz Illumina HiSeq 2000 /files/ENCFF631HIV/ released antibody characterized with exemption experiment not submitted to GEO ENCFF566JWZ bam unfiltered alignments ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF483MLV, ENCFF745ORG, ENCFF807MUK 4690745306 ENCODE Processing Pipeline 80e297373e56786cd8ee06fa9ac9fc0e https://www.encodeproject.org/files/ENCFF566JWZ/@@download/ENCFF566JWZ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF264SIT bam unfiltered alignments ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF483MLV, ENCFF643CGH, ENCFF745ORG 4693369795 ENCODE Processing Pipeline 6a0807716e7c6eabb7ff2cbdfdc07f09 https://www.encodeproject.org/files/ENCFF264SIT/@@download/ENCFF264SIT.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF983SGW bam alignments ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF483MLV, ENCFF745ORG, ENCFF807MUK 3301383891 ENCODE Processing Pipeline 26e9aaeceeba3b45e42d416ee6f8f7bf https://www.encodeproject.org/files/ENCFF983SGW/@@download/ENCFF983SGW.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF623VUZ bam alignments ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF483MLV, ENCFF643CGH, ENCFF745ORG 3300449029 ENCODE Processing Pipeline 50fc79194d386a3a451b8fbf341a7a15 https://www.encodeproject.org/files/ENCFF623VUZ/@@download/ENCFF623VUZ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF128PQG bed narrowPeak peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF623VUZ, ENCFF803PDD 6442004 ENCODE Processing Pipeline 3ce6ca2bba714dc466850c6ab9f0ebcf https://www.encodeproject.org/files/ENCFF128PQG/@@download/ENCFF128PQG.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF112GTB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF128PQG, ENCFF419RSJ 1322602 ENCODE Processing Pipeline 0bde796473c5d3a40e8386a9c9e7bd5d https://www.encodeproject.org/files/ENCFF112GTB/@@download/ENCFF112GTB.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF202FHK bigWig signal p-value ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF623VUZ, ENCFF803PDD 1113081014 ENCODE Processing Pipeline 1c2520e7c9a5e2bc93a6d65531fe7a6e https://www.encodeproject.org/files/ENCFF202FHK/@@download/ENCFF202FHK.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF294WYN bigWig fold change over control ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF623VUZ, ENCFF803PDD 571203980 ENCODE Processing Pipeline ba8290941f13e82c88d724e5f3493352 https://www.encodeproject.org/files/ENCFF294WYN/@@download/ENCFF294WYN.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF625TME bigBed narrowPeak peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF128PQG 11568771 ENCODE Processing Pipeline 73818b49c5eeb38b3065013e0b1ce48b https://www.encodeproject.org/files/ENCFF625TME/@@download/ENCFF625TME.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF731QNN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF112GTB 2473648 ENCODE Processing Pipeline 0a7fa01d963fb1ed90d5035ee3023e46 https://www.encodeproject.org/files/ENCFF731QNN/@@download/ENCFF731QNN.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF946SLI bigWig fold change over control ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF267HPF, ENCFF983SGW 571591565 ENCODE Processing Pipeline baab1abaf2d5190e2ea1c0f693134506 https://www.encodeproject.org/files/ENCFF946SLI/@@download/ENCFF946SLI.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF747YTO bigBed narrowPeak peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF065MTT 12067025 ENCODE Processing Pipeline 325e992cbd719426e420b7622fa47b68 https://www.encodeproject.org/files/ENCFF747YTO/@@download/ENCFF747YTO.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF999KYS bigWig signal p-value ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF267HPF, ENCFF983SGW 1026855653 ENCODE Processing Pipeline bb91e2a098d57172dc1a62fec0e1a1b2 https://www.encodeproject.org/files/ENCFF999KYS/@@download/ENCFF999KYS.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF305QEN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF979BDX 2470691 ENCODE Processing Pipeline 61aff374b26b24e78e9a8cc74ab944e8 https://www.encodeproject.org/files/ENCFF305QEN/@@download/ENCFF305QEN.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF979BDX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF065MTT 1320964 ENCODE Processing Pipeline 412ea07bbceacf259f0a1366667ad5f8 https://www.encodeproject.org/files/ENCFF979BDX/@@download/ENCFF979BDX.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF065MTT bed narrowPeak peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF267HPF, ENCFF983SGW 6807105 ENCODE Processing Pipeline 414146b6dd2b4f0a7f6021a7cab28692 https://www.encodeproject.org/files/ENCFF065MTT/@@download/ENCFF065MTT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF175RYK fastq reads ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF287TQD 2117158261 Richard Myers, HAIB 11d017adbea451e2f48002cfc40bc0a2 SRA:SRR6213671 https://www.encodeproject.org/files/ENCFF175RYK/@@download/ENCFF175RYK.fastq.gz Illumina HiSeq 2000 /files/ENCFF088HMZ/ released antibody characterized with exemption missing control alignments ENCFF287TQD fastq reads ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF175RYK 2226718227 Richard Myers, HAIB ebf6f3b0b47b6376c4e80202787d5af0 SRA:SRR6213671 https://www.encodeproject.org/files/ENCFF287TQD/@@download/ENCFF287TQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF722QTP/ released antibody characterized with exemption missing control alignments ENCFF214BIG bam alignments ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF175RYK, ENCFF287TQD, ENCFF807MUK 3978133257 ENCODE Processing Pipeline 913751d33d1d76ab5ef340c1ca093288 https://www.encodeproject.org/files/ENCFF214BIG/@@download/ENCFF214BIG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF871DWG bam unfiltered alignments ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF175RYK, ENCFF287TQD, ENCFF807MUK 5276149260 ENCODE Processing Pipeline 3cfd0d31ed451cea33f4bfe80ec6b4ae https://www.encodeproject.org/files/ENCFF871DWG/@@download/ENCFF871DWG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF778SOD bam unfiltered alignments ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF175RYK, ENCFF287TQD, ENCFF643CGH 5301310825 ENCODE Processing Pipeline 16b8347c0e6da311c61965b7148e7798 https://www.encodeproject.org/files/ENCFF778SOD/@@download/ENCFF778SOD.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF533BQE bam alignments ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF175RYK, ENCFF287TQD, ENCFF643CGH 3981961601 ENCODE Processing Pipeline 1eed2c39cd4bbb4f3796f59d69de30f5 https://www.encodeproject.org/files/ENCFF533BQE/@@download/ENCFF533BQE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF169QIW bigWig signal p-value ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF533BQE 1447111243 ENCODE Processing Pipeline 0769c5d58fc3c26bfeb6782ecf19ca20 https://www.encodeproject.org/files/ENCFF169QIW/@@download/ENCFF169QIW.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF141YEU bigWig fold change over control ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF533BQE 1454733162 ENCODE Processing Pipeline 56a4e9bbcf0f301ca845eaeaeec5587e https://www.encodeproject.org/files/ENCFF141YEU/@@download/ENCFF141YEU.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF649MFN bed narrowPeak peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF533BQE 5748223 ENCODE Processing Pipeline ff6c1530b76c4cbdb8f6f9e89b33081b https://www.encodeproject.org/files/ENCFF649MFN/@@download/ENCFF649MFN.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF614VFU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF649MFN 1113 ENCODE Processing Pipeline 2bb0ba306609508813ca01072a9b91dd https://www.encodeproject.org/files/ENCFF614VFU/@@download/ENCFF614VFU.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF648ODL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF614VFU 77132 ENCODE Processing Pipeline 72f6ea9fdcbe23774d0b5fe4fa2b4e4b https://www.encodeproject.org/files/ENCFF648ODL/@@download/ENCFF648ODL.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF686NBP bigBed narrowPeak peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF649MFN 11914134 ENCODE Processing Pipeline fb7caa31a0cb82ebc9078780994aa8bb https://www.encodeproject.org/files/ENCFF686NBP/@@download/ENCFF686NBP.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF770IUZ bigWig signal p-value ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF214BIG 1591389678 ENCODE Processing Pipeline 22d5e700e3c50521a904c0e553f2c088 https://www.encodeproject.org/files/ENCFF770IUZ/@@download/ENCFF770IUZ.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF020NZV bigWig fold change over control ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF214BIG 1441611713 ENCODE Processing Pipeline 717c0c111ab821ed7631cdec2e105211 https://www.encodeproject.org/files/ENCFF020NZV/@@download/ENCFF020NZV.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF407HSE bigBed narrowPeak peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF662PBM 11608725 ENCODE Processing Pipeline 1381dac8f5ccce4f0dd9aa2b8595af2e https://www.encodeproject.org/files/ENCFF407HSE/@@download/ENCFF407HSE.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF662PBM bed narrowPeak peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF214BIG 5508970 ENCODE Processing Pipeline 59ceb2705275ef86a80deae6ae72c4bb https://www.encodeproject.org/files/ENCFF662PBM/@@download/ENCFF662PBM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF804AVM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF662PBM 807 ENCODE Processing Pipeline a163aa4054a89722cb6ca269781b8b63 https://www.encodeproject.org/files/ENCFF804AVM/@@download/ENCFF804AVM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF096GUL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF804AVM 68251 ENCODE Processing Pipeline b8d5572449d2a477e1e7b619e3915abb https://www.encodeproject.org/files/ENCFF096GUL/@@download/ENCFF096GUL.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF069AUE fastq reads ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 1 ENCFF404WKI 3303042540 Michael Snyder, Stanford 99c2c8bde419e519a1f1287905ddd78e SRA:SRR6214318 https://www.encodeproject.org/files/ENCFF069AUE/@@download/ENCFF069AUE.fastq.gz Illumina HiSeq 4000 /files/ENCFF184KAN/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF404WKI fastq reads ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 2 ENCFF069AUE 3884504015 Michael Snyder, Stanford 553c209414400c2ba75e8a2abb738e53 SRA:SRR6214318 https://www.encodeproject.org/files/ENCFF404WKI/@@download/ENCFF404WKI.fastq.gz Illumina HiSeq 4000 /files/ENCFF535EZI/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF212QPW bam unfiltered alignments ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF069AUE, ENCFF404WKI, ENCFF807MUK 6402965367 ENCODE Processing Pipeline 43e28f7577d7253f7e59bcc454a99b14 https://www.encodeproject.org/files/ENCFF212QPW/@@download/ENCFF212QPW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF476UBO bam unfiltered alignments ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF069AUE, ENCFF404WKI, ENCFF643CGH 6406110919 ENCODE Processing Pipeline 65d09bd3cd3115bb3987b8d45e61c342 https://www.encodeproject.org/files/ENCFF476UBO/@@download/ENCFF476UBO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF491YAV bam alignments ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF069AUE, ENCFF404WKI, ENCFF643CGH 4473112256 ENCODE Processing Pipeline 75e7e727f61b5bdd64738a76de3a7cae https://www.encodeproject.org/files/ENCFF491YAV/@@download/ENCFF491YAV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF641MHP bam alignments ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF069AUE, ENCFF404WKI, ENCFF807MUK 4467715359 ENCODE Processing Pipeline 6d7a891216a6a262a95ec51244d29632 https://www.encodeproject.org/files/ENCFF641MHP/@@download/ENCFF641MHP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF285NTN bigWig signal p-value ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF055UXI, ENCFF641MHP 1442695964 ENCODE Processing Pipeline ef5783e1231e1a6e6e9d3e1483f9e117 https://www.encodeproject.org/files/ENCFF285NTN/@@download/ENCFF285NTN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF874VTY bigWig fold change over control ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF055UXI, ENCFF641MHP 1429895300 ENCODE Processing Pipeline 780b3a0a3911a7ae95b7d914ede02474 https://www.encodeproject.org/files/ENCFF874VTY/@@download/ENCFF874VTY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF035HDX bigBed narrowPeak peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF033XQB 13376645 ENCODE Processing Pipeline c6e9554b2b739a93572d4add50d8f62c https://www.encodeproject.org/files/ENCFF035HDX/@@download/ENCFF035HDX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF721JKB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF033XQB 471964 ENCODE Processing Pipeline 54819dbf56c7e2f58ba811167f581dc3 https://www.encodeproject.org/files/ENCFF721JKB/@@download/ENCFF721JKB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF348CWF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF721JKB 954022 ENCODE Processing Pipeline 50f9862ec199f736d93a158e097eb928 https://www.encodeproject.org/files/ENCFF348CWF/@@download/ENCFF348CWF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF033XQB bed narrowPeak peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF055UXI, ENCFF641MHP 6837061 ENCODE Processing Pipeline c2708a0e7a8aaf4648fc520b5496a8d8 https://www.encodeproject.org/files/ENCFF033XQB/@@download/ENCFF033XQB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF685EYQ bigWig signal p-value ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF084AUO, ENCFF491YAV 1444562345 ENCODE Processing Pipeline 7488ba32a9c867e6ecae4f21fe1aad63 https://www.encodeproject.org/files/ENCFF685EYQ/@@download/ENCFF685EYQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF705MDH bigWig fold change over control ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF084AUO, ENCFF491YAV 1431754246 ENCODE Processing Pipeline 25ff14a8622b8934dc56a94cc9fa3e86 https://www.encodeproject.org/files/ENCFF705MDH/@@download/ENCFF705MDH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF318PPL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF797OLU 1179110 ENCODE Processing Pipeline d13551582a62113ffd43770cb1dd6d64 https://www.encodeproject.org/files/ENCFF318PPL/@@download/ENCFF318PPL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF940ULQ bigBed narrowPeak peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF572ESJ 13444648 ENCODE Processing Pipeline cd32c3c4f82e2c6e733a26c3a14a0e28 https://www.encodeproject.org/files/ENCFF940ULQ/@@download/ENCFF940ULQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF572ESJ bed narrowPeak peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF084AUO, ENCFF491YAV 6880123 ENCODE Processing Pipeline eba8b3bb8d15426f4181a719abb5ac9e https://www.encodeproject.org/files/ENCFF572ESJ/@@download/ENCFF572ESJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF797OLU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF419RSJ, ENCFF572ESJ 483972 ENCODE Processing Pipeline d0f261dfd54e31f99f1d075044685197 https://www.encodeproject.org/files/ENCFF797OLU/@@download/ENCFF797OLU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF784WOU fastq reads ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF258KHA 1614380646 Richard Myers, HAIB 7bc00f6239413a101b3a170dca9f6b97 https://www.encodeproject.org/files/ENCFF784WOU/@@download/ENCFF784WOU.fastq.gz Illumina HiSeq 2000 /files/ENCFF698GOD/ released antibody characterized with exemption experiment not submitted to GEO ENCFF258KHA fastq reads ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF784WOU 1684754346 Richard Myers, HAIB 6e5fa58b1599bcfe810f89fb8dc2965b https://www.encodeproject.org/files/ENCFF258KHA/@@download/ENCFF258KHA.fastq.gz Illumina HiSeq 2000 /files/ENCFF051ZTX/ released antibody characterized with exemption experiment not submitted to GEO ENCFF415EFI bam unfiltered alignments ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF258KHA, ENCFF784WOU, ENCFF807MUK 3977314383 ENCODE Processing Pipeline bfc1dcd1f64598d088a03f1e6c649186 https://www.encodeproject.org/files/ENCFF415EFI/@@download/ENCFF415EFI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF957ANO bam unfiltered alignments ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF258KHA, ENCFF643CGH, ENCFF784WOU 3987083552 ENCODE Processing Pipeline 258c371c9a862f3c3d5bde911436b84c https://www.encodeproject.org/files/ENCFF957ANO/@@download/ENCFF957ANO.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF241EOY bam alignments ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF258KHA, ENCFF784WOU, ENCFF807MUK 2954555267 ENCODE Processing Pipeline f07c6a7c717ba5517d54297a0aacc295 https://www.encodeproject.org/files/ENCFF241EOY/@@download/ENCFF241EOY.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF665YIS bam alignments ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF258KHA, ENCFF643CGH, ENCFF784WOU 2954908399 ENCODE Processing Pipeline fe6df9d044100c34defb3ec76c5cc60d https://www.encodeproject.org/files/ENCFF665YIS/@@download/ENCFF665YIS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF385QPB bigWig fold change over control ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF485SVR, ENCFF665YIS 941316499 ENCODE Processing Pipeline ccbfaa660c051cfc7ccee80babc33c14 https://www.encodeproject.org/files/ENCFF385QPB/@@download/ENCFF385QPB.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF755ATB bed narrowPeak peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF485SVR, ENCFF665YIS 7039081 ENCODE Processing Pipeline 13aa71882fa5d689ef86aaccafa57ffa https://www.encodeproject.org/files/ENCFF755ATB/@@download/ENCFF755ATB.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF089AQW bigWig signal p-value ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF485SVR, ENCFF665YIS 1205005070 ENCODE Processing Pipeline 5ca3f27b2bb336bffb8fcb88ab40a717 https://www.encodeproject.org/files/ENCFF089AQW/@@download/ENCFF089AQW.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF699AQZ bigWig signal p-value ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF241EOY, ENCFF339SFQ 1299659901 ENCODE Processing Pipeline 2dac65b379b1181288074f39e68bbe62 https://www.encodeproject.org/files/ENCFF699AQZ/@@download/ENCFF699AQZ.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF391YXI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF755ATB 553554 ENCODE Processing Pipeline ac3399d696dbae17d0085977cf3f44a6 https://www.encodeproject.org/files/ENCFF391YXI/@@download/ENCFF391YXI.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF440KFY bigBed narrowPeak peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF755ATB 13109880 ENCODE Processing Pipeline edb7f6dd5d176f7fd440f689d40c185d https://www.encodeproject.org/files/ENCFF440KFY/@@download/ENCFF440KFY.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF735PIC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF391YXI 1111723 ENCODE Processing Pipeline 7b352427913c96b5a3b6451bef7c49d9 https://www.encodeproject.org/files/ENCFF735PIC/@@download/ENCFF735PIC.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF983AVN bed narrowPeak peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF241EOY, ENCFF339SFQ 6959954 ENCODE Processing Pipeline 8cc99a44030761bd1e07ff83ba567fdb https://www.encodeproject.org/files/ENCFF983AVN/@@download/ENCFF983AVN.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF506QKU bigWig fold change over control ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF241EOY, ENCFF339SFQ 949287855 ENCODE Processing Pipeline 11e6d829a356533ec253855db66cc64c https://www.encodeproject.org/files/ENCFF506QKU/@@download/ENCFF506QKU.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF525NFF bigBed narrowPeak peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF983AVN 13014597 ENCODE Processing Pipeline 3de533e334466edbe1ff47830988fad5 https://www.encodeproject.org/files/ENCFF525NFF/@@download/ENCFF525NFF.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF092KCB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF983AVN 525809 ENCODE Processing Pipeline cb09b8fadefcb1b8a1b8293040add3e9 https://www.encodeproject.org/files/ENCFF092KCB/@@download/ENCFF092KCB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF545GZQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF092KCB 1071840 ENCODE Processing Pipeline 6143bdbd67bda18cc12afe5df64f6a5c https://www.encodeproject.org/files/ENCFF545GZQ/@@download/ENCFF545GZQ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF550IEW fastq reads ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 2 ENCFF096WFG 3368132949 Michael Snyder, Stanford 3480db2c30261981a09a410a78c71e3f SRA:SRR6214079 https://www.encodeproject.org/files/ENCFF550IEW/@@download/ENCFF550IEW.fastq.gz Illumina HiSeq 4000 /files/ENCFF896ECQ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF096WFG fastq reads ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 1 ENCFF550IEW 2939437007 Michael Snyder, Stanford 9dcb5152bc309b1f65dc050737b9f7f3 SRA:SRR6214079 https://www.encodeproject.org/files/ENCFF096WFG/@@download/ENCFF096WFG.fastq.gz Illumina HiSeq 4000 /files/ENCFF573DUG/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF176XZK bam unfiltered alignments ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF096WFG, ENCFF550IEW, ENCFF643CGH 6145291097 ENCODE Processing Pipeline 0319a68ec495132f65ad79af3aba3d7f https://www.encodeproject.org/files/ENCFF176XZK/@@download/ENCFF176XZK.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF670IMS bam unfiltered alignments ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF096WFG, ENCFF550IEW, ENCFF807MUK 6139534950 ENCODE Processing Pipeline ba732a3102c584b9c2b8321456fd40f2 https://www.encodeproject.org/files/ENCFF670IMS/@@download/ENCFF670IMS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF480MSL bam alignments ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF096WFG, ENCFF550IEW, ENCFF643CGH 4526660583 ENCODE Processing Pipeline bcdfe1d30d57942605398e76aa41902a https://www.encodeproject.org/files/ENCFF480MSL/@@download/ENCFF480MSL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF485STY bam alignments ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF096WFG, ENCFF550IEW, ENCFF807MUK 4518894260 ENCODE Processing Pipeline dc47e81849db0d191edaf36808d5ef29 https://www.encodeproject.org/files/ENCFF485STY/@@download/ENCFF485STY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF539QPG bigWig signal p-value ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF485STY, ENCFF693IBS 1482068301 ENCODE Processing Pipeline d82b2021e14f67a035744097b086e6b5 https://www.encodeproject.org/files/ENCFF539QPG/@@download/ENCFF539QPG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF952CFV bigWig signal p-value ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF480MSL, ENCFF764CLL 1484614915 ENCODE Processing Pipeline 0c6b8703de72a7deec8d663b290c5bfd https://www.encodeproject.org/files/ENCFF952CFV/@@download/ENCFF952CFV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF576LRL bigWig fold change over control ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF485STY, ENCFF693IBS 1440970016 ENCODE Processing Pipeline 43e01f12dabdb5a9fdd5d0883a4046dd https://www.encodeproject.org/files/ENCFF576LRL/@@download/ENCFF576LRL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF379TMV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF458RGL 60519 ENCODE Processing Pipeline 7994b2fdca87addd291233479369fd4a https://www.encodeproject.org/files/ENCFF379TMV/@@download/ENCFF379TMV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF458RGL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF977AFL 5478 ENCODE Processing Pipeline 5a990b35fe8419a9281fd1e17db081db https://www.encodeproject.org/files/ENCFF458RGL/@@download/ENCFF458RGL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF953XOJ bigWig fold change over control ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF480MSL, ENCFF764CLL 1436207534 ENCODE Processing Pipeline 116b538226de382da9cf74aa28edf16b https://www.encodeproject.org/files/ENCFF953XOJ/@@download/ENCFF953XOJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF498UKG bigBed narrowPeak peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF977AFL 11481119 ENCODE Processing Pipeline ac9bc362ad5fd5792b4cddf323e7da63 https://www.encodeproject.org/files/ENCFF498UKG/@@download/ENCFF498UKG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF887ONX bed narrowPeak peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF480MSL, ENCFF764CLL 6181155 ENCODE Processing Pipeline cde6d71e6e55999aab77445cc9f1daa4 https://www.encodeproject.org/files/ENCFF887ONX/@@download/ENCFF887ONX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF977AFL bed narrowPeak peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF485STY, ENCFF693IBS 6177254 ENCODE Processing Pipeline 5d4a34cbe430ca9d611c8a900578e029 https://www.encodeproject.org/files/ENCFF977AFL/@@download/ENCFF977AFL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF691ARB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF419RSJ, ENCFF887ONX 5382 ENCODE Processing Pipeline fd0276f69ab14ad129bcfb58256ddfe8 https://www.encodeproject.org/files/ENCFF691ARB/@@download/ENCFF691ARB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF536RRY bigBed narrowPeak peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF887ONX 11503597 ENCODE Processing Pipeline 13aaff4cd41f3fe8fe26744254deedb5 https://www.encodeproject.org/files/ENCFF536RRY/@@download/ENCFF536RRY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF943NPN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF691ARB 61531 ENCODE Processing Pipeline c166436740a446fd8edf50537b9d2590 https://www.encodeproject.org/files/ENCFF943NPN/@@download/ENCFF943NPN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF036RTO fastq reads ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF057CUF 2115448675 Richard Myers, HAIB 5275690b05cbf12914e9aa38f0dd5cc5 https://www.encodeproject.org/files/ENCFF036RTO/@@download/ENCFF036RTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF843ANS/ released antibody characterized with exemption experiment not submitted to GEO ENCFF057CUF fastq reads ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF036RTO 2150632744 Richard Myers, HAIB 483c6fb4bab5d3618ecf30065a6c2dad https://www.encodeproject.org/files/ENCFF057CUF/@@download/ENCFF057CUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF804NZY/ released antibody characterized with exemption experiment not submitted to GEO ENCFF131YXI bam unfiltered alignments ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF036RTO, ENCFF057CUF, ENCFF807MUK 5216440541 ENCODE Processing Pipeline f5b605bde8cd2d046f03f96ddf6ac7ff https://www.encodeproject.org/files/ENCFF131YXI/@@download/ENCFF131YXI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF498ZOO bam alignments ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF036RTO, ENCFF057CUF, ENCFF807MUK 4058470209 ENCODE Processing Pipeline 49b9aa4eb0fd3770eacf0fb4351acb41 https://www.encodeproject.org/files/ENCFF498ZOO/@@download/ENCFF498ZOO.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF629JEH bam alignments ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF036RTO, ENCFF057CUF, ENCFF643CGH 4061238100 ENCODE Processing Pipeline 794fc72d04c0b598658254869ce4feb8 https://www.encodeproject.org/files/ENCFF629JEH/@@download/ENCFF629JEH.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF370UVE bam unfiltered alignments ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF036RTO, ENCFF057CUF, ENCFF643CGH 5241373556 ENCODE Processing Pipeline 10ff07824bc162882b2350e37ec87abc https://www.encodeproject.org/files/ENCFF370UVE/@@download/ENCFF370UVE.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF937PXN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF547RTC 215305 ENCODE Processing Pipeline 6570c39efd498e257cf0a17482b2e64d https://www.encodeproject.org/files/ENCFF937PXN/@@download/ENCFF937PXN.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF971ZTQ bigWig signal p-value ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629JEH, ENCFF711ZWZ 1287125856 ENCODE Processing Pipeline 01d59795240c9142e54181b7313615e1 https://www.encodeproject.org/files/ENCFF971ZTQ/@@download/ENCFF971ZTQ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF209EBN bigWig fold change over control ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629JEH, ENCFF711ZWZ 1234545856 ENCODE Processing Pipeline ac02b7e25deecb68dc38a533663737aa https://www.encodeproject.org/files/ENCFF209EBN/@@download/ENCFF209EBN.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF300KXC bed narrowPeak peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629JEH, ENCFF711ZWZ 5477370 ENCODE Processing Pipeline b3fb453f57c1ed3dbee68803c0c6f25d https://www.encodeproject.org/files/ENCFF300KXC/@@download/ENCFF300KXC.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF547RTC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF300KXC, ENCFF419RSJ 97487 ENCODE Processing Pipeline 3f063b1627a4b1af21576348d6e090ec https://www.encodeproject.org/files/ENCFF547RTC/@@download/ENCFF547RTC.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF549OPB bigBed narrowPeak peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF300KXC 11854652 ENCODE Processing Pipeline d753ee9ccc7c27d805de5b08a4e53b64 https://www.encodeproject.org/files/ENCFF549OPB/@@download/ENCFF549OPB.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF079WAL bigWig fold change over control ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF498ZOO, ENCFF501SMY 1251429603 ENCODE Processing Pipeline ce0492127bec7fdf9b3c97b2feba6d8c https://www.encodeproject.org/files/ENCFF079WAL/@@download/ENCFF079WAL.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF760YJA bigBed narrowPeak peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF394RPT 11839159 ENCODE Processing Pipeline 035f9e23f7e261010994c7d100f467c4 https://www.encodeproject.org/files/ENCFF760YJA/@@download/ENCFF760YJA.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF909NKP bigWig signal p-value ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF498ZOO, ENCFF501SMY 1293899256 ENCODE Processing Pipeline 0cf5099527a6f1e9718ef0ae54333338 https://www.encodeproject.org/files/ENCFF909NKP/@@download/ENCFF909NKP.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF782WAR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF957HGU 212319 ENCODE Processing Pipeline a431f24b97718b43dbb90c09a1188455 https://www.encodeproject.org/files/ENCFF782WAR/@@download/ENCFF782WAR.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF394RPT bed narrowPeak peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF498ZOO, ENCFF501SMY 5477979 ENCODE Processing Pipeline 14cc0d2d1c455cf106c34196e8ef57df https://www.encodeproject.org/files/ENCFF394RPT/@@download/ENCFF394RPT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF957HGU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF394RPT 97457 ENCODE Processing Pipeline 7e98cdc99eeb54841500413769bdf2c3 https://www.encodeproject.org/files/ENCFF957HGU/@@download/ENCFF957HGU.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF722QHD fastq reads ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF196OYG 2284494430 Michael Snyder, Stanford 92fd8ca7bfb382cc67b1a3aea4499764 SRA:SRR6213539 https://www.encodeproject.org/files/ENCFF722QHD/@@download/ENCFF722QHD.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF196OYG fastq reads ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF722QHD 2716982671 Michael Snyder, Stanford 074e78c02fe0128ed642b1b02013759f SRA:SRR6213539 https://www.encodeproject.org/files/ENCFF196OYG/@@download/ENCFF196OYG.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF814CIF fastq reads ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF860HSN 2622083597 Michael Snyder, Stanford d195f5de96e6e121e1dd1cda93d67ef5 SRA:SRR6213540 https://www.encodeproject.org/files/ENCFF814CIF/@@download/ENCFF814CIF.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF860HSN fastq reads ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF814CIF 3077510297 Michael Snyder, Stanford ef7bdb8c4386de9c2a6db32bacc02ab5 SRA:SRR6213540 https://www.encodeproject.org/files/ENCFF860HSN/@@download/ENCFF860HSN.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF195AYY bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF196OYG, ENCFF643CGH, ENCFF722QHD 3635029028 ENCODE Processing Pipeline 0fe99674bd077ee43bc13da19330b74d https://www.encodeproject.org/files/ENCFF195AYY/@@download/ENCFF195AYY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF125ZRD bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF196OYG, ENCFF722QHD, ENCFF807MUK 3629552076 ENCODE Processing Pipeline 52720fb91668c9aca1e0493249a8efe7 https://www.encodeproject.org/files/ENCFF125ZRD/@@download/ENCFF125ZRD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF304DHX bam unfiltered alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF196OYG, ENCFF643CGH, ENCFF722QHD 4973584422 ENCODE Processing Pipeline 3b9ac1df60cc0140508c714257bf8f60 https://www.encodeproject.org/files/ENCFF304DHX/@@download/ENCFF304DHX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF467GZK bam unfiltered alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF196OYG, ENCFF722QHD, ENCFF807MUK 4964853274 ENCODE Processing Pipeline 8c13bfa1af9268e468df1e710cd9388f https://www.encodeproject.org/files/ENCFF467GZK/@@download/ENCFF467GZK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF951PIU bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF807MUK, ENCFF814CIF, ENCFF860HSN 4244754506 ENCODE Processing Pipeline ee36ca99ba91fc5715c6e7a23a47955c https://www.encodeproject.org/files/ENCFF951PIU/@@download/ENCFF951PIU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF364EXI bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF814CIF, ENCFF860HSN 4250208608 ENCODE Processing Pipeline 6f9ca35da234698e519660206222d835 https://www.encodeproject.org/files/ENCFF364EXI/@@download/ENCFF364EXI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF304ESO bam unfiltered alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF807MUK, ENCFF814CIF, ENCFF860HSN 5552273981 ENCODE Processing Pipeline 829373c50694179265c3de6610679f37 https://www.encodeproject.org/files/ENCFF304ESO/@@download/ENCFF304ESO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF620MCO bam unfiltered alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF814CIF, ENCFF860HSN 5562253167 ENCODE Processing Pipeline 2b102cba6e72500584c3ac3773b3c8fe https://www.encodeproject.org/files/ENCFF620MCO/@@download/ENCFF620MCO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF457FPW bigWig signal p-value ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF364EXI, ENCFF475DWJ, ENCFF621RXC 1968280905 ENCODE Processing Pipeline 7d1474f582cdc74bd6b1b90a3b514b6b https://www.encodeproject.org/files/ENCFF457FPW/@@download/ENCFF457FPW.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF265EZD bigWig signal p-value ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF195AYY, ENCFF475DWJ, ENCFF621RXC 2004634398 ENCODE Processing Pipeline 4dde1028599f849629cd8fa35118685a https://www.encodeproject.org/files/ENCFF265EZD/@@download/ENCFF265EZD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF904QAD bed narrowPeak optimal idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF120BBW, ENCFF124RYN, ENCFF397IOO, ENCFF419RSJ 143812 ENCODE Processing Pipeline fb139e93a408b562d675aa74912d9985 https://www.encodeproject.org/files/ENCFF904QAD/@@download/ENCFF904QAD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF819JXA bigWig fold change over control ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF364EXI, ENCFF475DWJ, ENCFF621RXC 1996077997 ENCODE Processing Pipeline f5f8030dd4c1aeb3ed61512be6213ebe https://www.encodeproject.org/files/ENCFF819JXA/@@download/ENCFF819JXA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF124RYN bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF364EXI, ENCFF475DWJ, ENCFF621RXC 6866209 ENCODE Processing Pipeline ad5446cb1aded002e4ac5c590985a062 https://www.encodeproject.org/files/ENCFF124RYN/@@download/ENCFF124RYN.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF120BBW bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF195AYY, ENCFF364EXI, ENCFF475DWJ, ENCFF621RXC 7200953 ENCODE Processing Pipeline f44762ddc46a3563c0130940991498a6 https://www.encodeproject.org/files/ENCFF120BBW/@@download/ENCFF120BBW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF204SLD bigBed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF124RYN 11390474 ENCODE Processing Pipeline e49c5705e3535be489ac49af6f13c4d0 https://www.encodeproject.org/files/ENCFF204SLD/@@download/ENCFF204SLD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF095DSJ bigBed narrowPeak optimal idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF904QAD 320053 ENCODE Processing Pipeline 247b54f86d936ce1b139b6911f2e0124 https://www.encodeproject.org/files/ENCFF095DSJ/@@download/ENCFF095DSJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF986HPD bigBed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF859ZGV 11374735 ENCODE Processing Pipeline 90cc98ff3c395bc556c0fa84bf0aa14a https://www.encodeproject.org/files/ENCFF986HPD/@@download/ENCFF986HPD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF397IOO bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF195AYY, ENCFF475DWJ, ENCFF621RXC 6780610 ENCODE Processing Pipeline 639193cba505def59a733090b1aa7a86 https://www.encodeproject.org/files/ENCFF397IOO/@@download/ENCFF397IOO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF316TGO bigBed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF120BBW 13366506 ENCODE Processing Pipeline f98800f88204e9c15d36cdd3ce323f57 https://www.encodeproject.org/files/ENCFF316TGO/@@download/ENCFF316TGO.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF218UXO bed narrowPeak conservative idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF120BBW, ENCFF124RYN, ENCFF397IOO, ENCFF419RSJ 111715 ENCODE Processing Pipeline fb9b30b9e863de9641be4e8659018118 https://www.encodeproject.org/files/ENCFF218UXO/@@download/ENCFF218UXO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF543OQK bigWig fold change over control ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 1974066077 ENCODE Processing Pipeline 7f4ae83826beac4be1ed72333cf4bd2f https://www.encodeproject.org/files/ENCFF543OQK/@@download/ENCFF543OQK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF859ZGV bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX 6777667 ENCODE Processing Pipeline 88c7ef5588f5f47b0933c6942f962542 https://www.encodeproject.org/files/ENCFF859ZGV/@@download/ENCFF859ZGV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF960SGY bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 7194643 ENCODE Processing Pipeline dc9ebcd8cc56f32383172fbd4bff66e0 https://www.encodeproject.org/files/ENCFF960SGY/@@download/ENCFF960SGY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF555NWJ bigWig fold change over control ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF195AYY, ENCFF475DWJ, ENCFF621RXC 1859354897 ENCODE Processing Pipeline 69f57390e6bb4036a61086d85c1fc8db https://www.encodeproject.org/files/ENCFF555NWJ/@@download/ENCFF555NWJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF716TVA bigWig fold change over control ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF195AYY, ENCFF364EXI, ENCFF475DWJ, ENCFF621RXC 2522188405 ENCODE Processing Pipeline da8a0ee62a976f01bb51df190c385fa5 https://www.encodeproject.org/files/ENCFF716TVA/@@download/ENCFF716TVA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF847RSY bigBed narrowPeak conservative idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF218UXO 269653 ENCODE Processing Pipeline b641462a2f42fb1f78ae8474a12f990f https://www.encodeproject.org/files/ENCFF847RSY/@@download/ENCFF847RSY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF875LAJ bigWig signal p-value ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 1988324944 ENCODE Processing Pipeline e6f6aaaa86b501e5208e568f7b91aff0 https://www.encodeproject.org/files/ENCFF875LAJ/@@download/ENCFF875LAJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF217YYT bed narrowPeak conservative idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF395YWQ, ENCFF859ZGV, ENCFF960SGY 110485 ENCODE Processing Pipeline f415f49fd9ffa346827088d79f95cdc9 https://www.encodeproject.org/files/ENCFF217YYT/@@download/ENCFF217YYT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF443EYO bed narrowPeak optimal idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF395YWQ, ENCFF859ZGV, ENCFF960SGY 147195 ENCODE Processing Pipeline 7f5a9423cdb84a36e4eb1a9e4d82cc96 https://www.encodeproject.org/files/ENCFF443EYO/@@download/ENCFF443EYO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF473NKW bigBed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF397IOO 11388500 ENCODE Processing Pipeline 61b999cb62a78a77789a2b2f2384149e https://www.encodeproject.org/files/ENCFF473NKW/@@download/ENCFF473NKW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF301JDW bigWig signal p-value ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX 1653613981 ENCODE Processing Pipeline 63580b916331e2866997f50cfdc4a610 https://www.encodeproject.org/files/ENCFF301JDW/@@download/ENCFF301JDW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF244XKD bigWig fold change over control ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX 1839755698 ENCODE Processing Pipeline 40f264a748c123cf280dd63afd2e2a7c https://www.encodeproject.org/files/ENCFF244XKD/@@download/ENCFF244XKD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF848KXJ bigWig fold change over control ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 2555293583 ENCODE Processing Pipeline 40634de2f87b919c121932af484a1f85 https://www.encodeproject.org/files/ENCFF848KXJ/@@download/ENCFF848KXJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF731OBS bigWig signal p-value ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF195AYY, ENCFF364EXI, ENCFF475DWJ, ENCFF621RXC 2221547940 ENCODE Processing Pipeline 2c656aaacad71d9ac9567cc28c36aa0c https://www.encodeproject.org/files/ENCFF731OBS/@@download/ENCFF731OBS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF783THR bigWig signal p-value ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 2289892925 ENCODE Processing Pipeline c38b13d9694e67f22d199c9cbee73164 https://www.encodeproject.org/files/ENCFF783THR/@@download/ENCFF783THR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF395YWQ bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 6865411 ENCODE Processing Pipeline 1755cfb6a6cc560ae713cad3f2c0ae86 https://www.encodeproject.org/files/ENCFF395YWQ/@@download/ENCFF395YWQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF277XFS bigBed narrowPeak conservative idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF217YYT 266840 ENCODE Processing Pipeline 5da2f573eb4946461b61a6f15b92d33f https://www.encodeproject.org/files/ENCFF277XFS/@@download/ENCFF277XFS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF384YVA bigBed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF395YWQ 11374883 ENCODE Processing Pipeline d099362a3fcbed7ede27e0f2b2e7a707 https://www.encodeproject.org/files/ENCFF384YVA/@@download/ENCFF384YVA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF170ZYW bigBed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF960SGY 13368220 ENCODE Processing Pipeline 6fb20f78f675b0dc69c5458d2eecf9b3 https://www.encodeproject.org/files/ENCFF170ZYW/@@download/ENCFF170ZYW.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF742LYP bigBed narrowPeak optimal idr thresholded peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF443EYO 323975 ENCODE Processing Pipeline 7463e6f50cdaa841166a1f7790409338 https://www.encodeproject.org/files/ENCFF742LYP/@@download/ENCFF742LYP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF864GSN fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF773RRJ 2781366484 Michael Snyder, Stanford 259a451d30e38a97c23e7b79cd3499b7 SRA:SRR6212899 https://www.encodeproject.org/files/ENCFF864GSN/@@download/ENCFF864GSN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF773RRJ fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF864GSN 2772617320 Michael Snyder, Stanford d4979d1444e688bff8f8221561270a43 SRA:SRR6212899 https://www.encodeproject.org/files/ENCFF773RRJ/@@download/ENCFF773RRJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF011RRD fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF460XZT 3056793893 Michael Snyder, Stanford f71fa6f2c1f2880bc909abf48b581c56 SRA:SRR6212900 https://www.encodeproject.org/files/ENCFF011RRD/@@download/ENCFF011RRD.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF460XZT fastq reads ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF011RRD 3574694736 Michael Snyder, Stanford ac445915f8db72fc0cab665ae70da84f SRA:SRR6212900 https://www.encodeproject.org/files/ENCFF460XZT/@@download/ENCFF460XZT.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF122LWT bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF773RRJ, ENCFF864GSN 3546990955 ENCODE Processing Pipeline b19876d1a94f87c1b135aaa7a1f0c364 https://www.encodeproject.org/files/ENCFF122LWT/@@download/ENCFF122LWT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF882APL bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF773RRJ, ENCFF807MUK, ENCFF864GSN 5045442212 ENCODE Processing Pipeline fe0f07fa985b47275ba0bd81ab01ba3e https://www.encodeproject.org/files/ENCFF882APL/@@download/ENCFF882APL.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF719YXO bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF773RRJ, ENCFF864GSN 5048119556 ENCODE Processing Pipeline 49be79821467638ca104ceb4a33b7399 https://www.encodeproject.org/files/ENCFF719YXO/@@download/ENCFF719YXO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF873ZZW bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF773RRJ, ENCFF807MUK, ENCFF864GSN 3541761227 ENCODE Processing Pipeline fdac7ebfb64e81ba4ddecd4c0910e9eb https://www.encodeproject.org/files/ENCFF873ZZW/@@download/ENCFF873ZZW.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF778UYM bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF807MUK 5766928400 ENCODE Processing Pipeline 4902ab0b803de21a326a7ab0d9e92ecf https://www.encodeproject.org/files/ENCFF778UYM/@@download/ENCFF778UYM.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF329ZGR bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF807MUK 3722604626 ENCODE Processing Pipeline 8434a97497a09ae8f98cb8dcb1abd250 https://www.encodeproject.org/files/ENCFF329ZGR/@@download/ENCFF329ZGR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF676MWP bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF643CGH 3727814272 ENCODE Processing Pipeline e8159593ed072e2813f33b5c7b8ef0f9 https://www.encodeproject.org/files/ENCFF676MWP/@@download/ENCFF676MWP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF754PAD bam unfiltered alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF643CGH 5768407714 ENCODE Processing Pipeline 1b7c08fbbb22b2fd91683d1a4a3bcf59 https://www.encodeproject.org/files/ENCFF754PAD/@@download/ENCFF754PAD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF636MWX bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF329ZGR, ENCFF592WAL, ENCFF873ZZW, ENCFF901CND 2249992810 ENCODE Processing Pipeline bf80fe5e05d321c746a89c3bbaeecc1d https://www.encodeproject.org/files/ENCFF636MWX/@@download/ENCFF636MWX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF569JWR bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 5807064 ENCODE Processing Pipeline 4dfaccae07a979933d1964cf64e81ddb https://www.encodeproject.org/files/ENCFF569JWR/@@download/ENCFF569JWR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF886RMX bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 5978243 ENCODE Processing Pipeline 09ae9d17e078b91aaf356d04a97ab953 https://www.encodeproject.org/files/ENCFF886RMX/@@download/ENCFF886RMX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF770KQZ bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF122LWT, ENCFF322NTO, ENCFF666ATR, ENCFF676MWP 6988632 ENCODE Processing Pipeline 89a2301c8a19ca6679e5bf761f5450f1 https://www.encodeproject.org/files/ENCFF770KQZ/@@download/ENCFF770KQZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF420SFO bigBed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF863OPI 283242 ENCODE Processing Pipeline 79a0c9e934014be391db3d8014f17f9f https://www.encodeproject.org/files/ENCFF420SFO/@@download/ENCFF420SFO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF470OOD bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF122LWT, ENCFF666ATR 1150711287 ENCODE Processing Pipeline 542789454dc6f35163163a1db5ecab82 https://www.encodeproject.org/files/ENCFF470OOD/@@download/ENCFF470OOD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF676FZV bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF676MWP 1070728878 ENCODE Processing Pipeline e1cd160550e3e286ee88b2159616651e https://www.encodeproject.org/files/ENCFF676FZV/@@download/ENCFF676FZV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF615APZ bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF329ZGR, ENCFF592WAL, ENCFF873ZZW, ENCFF901CND 2123331886 ENCODE Processing Pipeline 3598566161798dd760b38f308de8974d https://www.encodeproject.org/files/ENCFF615APZ/@@download/ENCFF615APZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF168BVC bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF122LWT, ENCFF322NTO, ENCFF666ATR, ENCFF676MWP 1934547703 ENCODE Processing Pipeline 7e9c8bf9210270a6ffe645cb4b0c9003 https://www.encodeproject.org/files/ENCFF168BVC/@@download/ENCFF168BVC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF567SBD bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF569JWR 11522824 ENCODE Processing Pipeline 9129bdd61b74f930d923da1a5f97595e https://www.encodeproject.org/files/ENCFF567SBD/@@download/ENCFF567SBD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF553QWX bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF430AOM 11559868 ENCODE Processing Pipeline 5336f55135efc8e786819c8db0b9d9af https://www.encodeproject.org/files/ENCFF553QWX/@@download/ENCFF553QWX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF233OLS bed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF569JWR, ENCFF629PYS, ENCFF886RMX 120481 ENCODE Processing Pipeline 3b7f0f9961a2604fa160d0edf0e01a86 https://www.encodeproject.org/files/ENCFF233OLS/@@download/ENCFF233OLS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF818LJR bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF676MWP 1249720375 ENCODE Processing Pipeline d39e864752c912d0fc29c23347f3530f https://www.encodeproject.org/files/ENCFF818LJR/@@download/ENCFF818LJR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF456QVX bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 1247153680 ENCODE Processing Pipeline 2c6d764234b525e151ec7cb9ece74fe1 https://www.encodeproject.org/files/ENCFF456QVX/@@download/ENCFF456QVX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF319YAI bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF122LWT, ENCFF322NTO, ENCFF666ATR, ENCFF676MWP 2235343901 ENCODE Processing Pipeline f1d46b6b3c4058130c689bb5b7e05d87 https://www.encodeproject.org/files/ENCFF319YAI/@@download/ENCFF319YAI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF430AOM bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF676MWP 5983578 ENCODE Processing Pipeline 68926d19bd4f361c1f8491b18a3e3817 https://www.encodeproject.org/files/ENCFF430AOM/@@download/ENCFF430AOM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF370PVX bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF886RMX 11540222 ENCODE Processing Pipeline 3b7b4a5a57c06b3bb2960133d47c1ddb https://www.encodeproject.org/files/ENCFF370PVX/@@download/ENCFF370PVX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF863OPI bed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF039FKV, ENCFF419RSJ, ENCFF430AOM, ENCFF770KQZ 122885 ENCODE Processing Pipeline 4c562c3de72deb0622c6882880183b59 https://www.encodeproject.org/files/ENCFF863OPI/@@download/ENCFF863OPI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF114MRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF566YUW 436457 ENCODE Processing Pipeline 0759a98757fb9995cb60445012d32557 https://www.encodeproject.org/files/ENCFF114MRQ/@@download/ENCFF114MRQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF652ZCF bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 1195243787 ENCODE Processing Pipeline 99b879f0cba1884b210c941a1bb8e745 https://www.encodeproject.org/files/ENCFF652ZCF/@@download/ENCFF652ZCF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF868RCI bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 1140575174 ENCODE Processing Pipeline 9d15a587a6d9f27205c494c93c610f27 https://www.encodeproject.org/files/ENCFF868RCI/@@download/ENCFF868RCI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF175MNG bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF039FKV 11538504 ENCODE Processing Pipeline 55e9c8a039dac071205a9a3ff88d9836 https://www.encodeproject.org/files/ENCFF175MNG/@@download/ENCFF175MNG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF613GQT bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF770KQZ 11504441 ENCODE Processing Pipeline a5ce29aced032b65f70fbe3c8cfc8714 https://www.encodeproject.org/files/ENCFF613GQT/@@download/ENCFF613GQT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF726EJL bigBed narrowPeak conservative idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF233OLS 277734 ENCODE Processing Pipeline 348bd0a940e56877f13da04a7b5e1d8a https://www.encodeproject.org/files/ENCFF726EJL/@@download/ENCFF726EJL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF566YUW bed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF569JWR, ENCFF629PYS, ENCFF886RMX 226453 ENCODE Processing Pipeline e42b637c8a6e8fa11ce0322f1525c6d4 https://www.encodeproject.org/files/ENCFF566YUW/@@download/ENCFF566YUW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF029HDH bigWig signal p-value ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 1153529200 ENCODE Processing Pipeline 12dc27d0212500d5a3d6840532ab9ffe https://www.encodeproject.org/files/ENCFF029HDH/@@download/ENCFF029HDH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF700SLE bigWig fold change over control ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF122LWT, ENCFF666ATR 1198266921 ENCODE Processing Pipeline ce9c9c0c5796b6586c3d5ea956744060 https://www.encodeproject.org/files/ENCFF700SLE/@@download/ENCFF700SLE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF039FKV bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF122LWT, ENCFF666ATR 5808258 ENCODE Processing Pipeline 51e48cbc67118a58817faef14b78219c https://www.encodeproject.org/files/ENCFF039FKV/@@download/ENCFF039FKV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF629PYS bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF329ZGR, ENCFF592WAL, ENCFF873ZZW, ENCFF901CND 6983367 ENCODE Processing Pipeline f8889da2a509ed8ecc31f7526f48d868 https://www.encodeproject.org/files/ENCFF629PYS/@@download/ENCFF629PYS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF141EKA bigBed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF629PYS 11484808 ENCODE Processing Pipeline bf7f2651e576684e9a79c8d84437bde5 https://www.encodeproject.org/files/ENCFF141EKA/@@download/ENCFF141EKA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF615DTQ bed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF039FKV, ENCFF419RSJ, ENCFF430AOM, ENCFF770KQZ 225122 ENCODE Processing Pipeline fed3cb852f3dddf50fc7256d43e41dd5 https://www.encodeproject.org/files/ENCFF615DTQ/@@download/ENCFF615DTQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF418PIY bigBed narrowPeak optimal idr thresholded peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF615DTQ 518535 ENCODE Processing Pipeline 4f67e0c71e4711c5d8e5ea37cd99460a https://www.encodeproject.org/files/ENCFF418PIY/@@download/ENCFF418PIY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF345UYZ bam unfiltered alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 100 ENCFF131JSB, ENCFF711WIA, ENCFF807MUK 4837904263 ENCODE Processing Pipeline c9b96112f3c9bb771c1d95d6a4d47b2a https://www.encodeproject.org/files/ENCFF345UYZ/@@download/ENCFF345UYZ.bam hg19 released missing genetic modification characterization ENCFF523FHI bam unfiltered alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 100 ENCFF307CQO, ENCFF683PDC, ENCFF807MUK 5610276581 ENCODE Processing Pipeline b404fd0cd768e5a4656b65f9c401f5a0 https://www.encodeproject.org/files/ENCFF523FHI/@@download/ENCFF523FHI.bam hg19 released missing genetic modification characterization ENCFF131JSB fastq reads ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF711WIA 2283754976 Michael Snyder, Stanford 81ecbc383c28d7ed2c21884908aac1e1 SRA:SRR5112119 https://www.encodeproject.org/files/ENCFF131JSB/@@download/ENCFF131JSB.fastq.gz Illumina HiSeq 2000 /files/ENCFF211RBV/ released missing genetic modification characterization ENCFF683PDC fastq reads ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF307CQO 2590415997 Michael Snyder, Stanford 1334d97655765b9eac29376fc49d6d55 SRA:SRR5112120 https://www.encodeproject.org/files/ENCFF683PDC/@@download/ENCFF683PDC.fastq.gz Illumina HiSeq 2000 /files/ENCFF345KIN/ released missing genetic modification characterization ENCFF307CQO fastq reads ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF683PDC 2681286491 Michael Snyder, Stanford bcc0616b5b85cf69fb3b4099523f5289 SRA:SRR5112120 https://www.encodeproject.org/files/ENCFF307CQO/@@download/ENCFF307CQO.fastq.gz Illumina HiSeq 2000 /files/ENCFF211RBV/ released missing genetic modification characterization ENCFF711WIA fastq reads ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF131JSB 2239877231 Michael Snyder, Stanford 8c4b2247a44324e872588efe00182b33 SRA:SRR5112119 https://www.encodeproject.org/files/ENCFF711WIA/@@download/ENCFF711WIA.fastq.gz Illumina HiSeq 2000 /files/ENCFF345KIN/ released missing genetic modification characterization ENCFF308BKD bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 100 ENCFF307CQO, ENCFF683PDC, ENCFF807MUK 4492676344 ENCODE Processing Pipeline 0c3920735cb5ee18984de6cad25d2df0 https://www.encodeproject.org/files/ENCFF308BKD/@@download/ENCFF308BKD.bam hg19 released missing genetic modification characterization ENCFF743FRI bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 100 ENCFF131JSB, ENCFF711WIA, ENCFF807MUK 3996168283 ENCODE Processing Pipeline a8f4427760911fb614748587c0bb0933 https://www.encodeproject.org/files/ENCFF743FRI/@@download/ENCFF743FRI.bam hg19 released missing genetic modification characterization ENCFF526POD bigWig signal p-value ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF500EQZ, ENCFF743FRI 1058183629 ENCODE Processing Pipeline 9079062d2f28e7a3db5a5781403d3a6d https://www.encodeproject.org/files/ENCFF526POD/@@download/ENCFF526POD.bigWig hg19 released missing genetic modification characterization ENCFF667DAO bigWig signal p-value ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF308BKD, ENCFF500EQZ 1101347497 ENCODE Processing Pipeline 56d73276cf6b70e31e87536a67e46bbd https://www.encodeproject.org/files/ENCFF667DAO/@@download/ENCFF667DAO.bigWig hg19 released missing genetic modification characterization ENCFF107IDU bigWig fold change over control ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF308BKD, ENCFF500EQZ 1081579905 ENCODE Processing Pipeline a1cb434a0a98804cd849137d012f0d51 https://www.encodeproject.org/files/ENCFF107IDU/@@download/ENCFF107IDU.bigWig hg19 released missing genetic modification characterization ENCFF222GKQ bigWig fold change over control ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF500EQZ, ENCFF743FRI 1083817698 ENCODE Processing Pipeline b3ab9dc46cd180b1d92f1ec71f2dfc93 https://www.encodeproject.org/files/ENCFF222GKQ/@@download/ENCFF222GKQ.bigWig hg19 released missing genetic modification characterization ENCFF181XDA bam unfiltered alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 100 ENCFF131JSB, ENCFF643CGH, ENCFF711WIA 4842813653 ENCODE Processing Pipeline adcc1510a2574c9efe7be77a95063a73 https://www.encodeproject.org/files/ENCFF181XDA/@@download/ENCFF181XDA.bam GRCh38 released missing genetic modification characterization ENCFF804RFI bam unfiltered alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 100 ENCFF307CQO, ENCFF643CGH, ENCFF683PDC 5616272440 ENCODE Processing Pipeline 5130d55bb784f54974912201ee3f1311 https://www.encodeproject.org/files/ENCFF804RFI/@@download/ENCFF804RFI.bam GRCh38 released missing genetic modification characterization ENCFF253HOC bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 100 ENCFF131JSB, ENCFF643CGH, ENCFF711WIA 3999119712 ENCODE Processing Pipeline 6dbf2c03d57b5bed5acbc5fa771565b5 https://www.encodeproject.org/files/ENCFF253HOC/@@download/ENCFF253HOC.bam GRCh38 released missing genetic modification characterization ENCFF773DBT bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 100 ENCFF307CQO, ENCFF643CGH, ENCFF683PDC 4495155363 ENCODE Processing Pipeline 0a2eac8cf5eea65727dac6c5682efdf9 https://www.encodeproject.org/files/ENCFF773DBT/@@download/ENCFF773DBT.bam GRCh38 released missing genetic modification characterization ENCFF359RYZ bigWig signal p-value ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF547QCM, ENCFF773DBT 1103089863 ENCODE Processing Pipeline bb29730a9393f12c8eed3a9219be0de6 https://www.encodeproject.org/files/ENCFF359RYZ/@@download/ENCFF359RYZ.bigWig GRCh38 released missing genetic modification characterization ENCFF469ZJN bigWig signal p-value ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF253HOC, ENCFF547QCM 917807271 ENCODE Processing Pipeline 554f26946a58d4e598407600d9fac07f https://www.encodeproject.org/files/ENCFF469ZJN/@@download/ENCFF469ZJN.bigWig GRCh38 released missing genetic modification characterization ENCFF294GWN bigWig signal p-value ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF253HOC, ENCFF547QCM, ENCFF773DBT 1277579804 ENCODE Processing Pipeline 306b300dd306f8c216e679305f3c3772 https://www.encodeproject.org/files/ENCFF294GWN/@@download/ENCFF294GWN.bigWig GRCh38 released missing genetic modification characterization ENCFF030QUO bigWig fold change over control ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF547QCM, ENCFF773DBT 1083480960 ENCODE Processing Pipeline 0f422cabf1679c29b4ed58596e356515 https://www.encodeproject.org/files/ENCFF030QUO/@@download/ENCFF030QUO.bigWig GRCh38 released missing genetic modification characterization ENCFF815ZUP bigWig fold change over control ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF253HOC, ENCFF547QCM 1084619456 ENCODE Processing Pipeline 2b5c451a6ca874e3759c33cffb10b420 https://www.encodeproject.org/files/ENCFF815ZUP/@@download/ENCFF815ZUP.bigWig GRCh38 released missing genetic modification characterization ENCFF042GTZ bigWig fold change over control ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF253HOC, ENCFF547QCM, ENCFF773DBT 1596162316 ENCODE Processing Pipeline 679ebeebf15eebee8718c4f796a38771 https://www.encodeproject.org/files/ENCFF042GTZ/@@download/ENCFF042GTZ.bigWig GRCh38 released missing genetic modification characterization ENCFF166ADO bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF253HOC, ENCFF547QCM 6744640 ENCODE Processing Pipeline 2dbf10c36f3953e0b10d7c52be02cce3 https://www.encodeproject.org/files/ENCFF166ADO/@@download/ENCFF166ADO.bed.gz GRCh38 released missing genetic modification characterization ENCFF748CBU bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF547QCM, ENCFF773DBT 6770747 ENCODE Processing Pipeline 9653024a160550a16d25d441f7574d22 https://www.encodeproject.org/files/ENCFF748CBU/@@download/ENCFF748CBU.bed.gz GRCh38 released missing genetic modification characterization ENCFF531MOW bigBed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF748CBU 13614706 ENCODE Processing Pipeline b68fefffd9a4b9e51491d493a75cc48b https://www.encodeproject.org/files/ENCFF531MOW/@@download/ENCFF531MOW.bigBed GRCh38 released missing genetic modification characterization ENCFF271XRG bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF253HOC, ENCFF547QCM, ENCFF773DBT 7216327 ENCODE Processing Pipeline 707c41f984e9e37d528b919a85415b83 https://www.encodeproject.org/files/ENCFF271XRG/@@download/ENCFF271XRG.bed.gz GRCh38 released missing genetic modification characterization ENCFF315YPV bigBed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF166ADO 13714961 ENCODE Processing Pipeline 21e3c3329838023ff44856d374ff2d5e https://www.encodeproject.org/files/ENCFF315YPV/@@download/ENCFF315YPV.bigBed GRCh38 released missing genetic modification characterization ENCFF984LWO bed narrowPeak conservative idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF166ADO, ENCFF271XRG, ENCFF419RSJ, ENCFF748CBU 754454 ENCODE Processing Pipeline 8f50cf77f97709ed1c5ecd57a93c49c2 https://www.encodeproject.org/files/ENCFF984LWO/@@download/ENCFF984LWO.bed.gz GRCh38 released missing genetic modification characterization ENCFF467IGT bigBed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF271XRG 13731841 ENCODE Processing Pipeline 6dd435337de6d8684bc307b381f7cd5c https://www.encodeproject.org/files/ENCFF467IGT/@@download/ENCFF467IGT.bigBed GRCh38 released missing genetic modification characterization ENCFF544XCR bigBed narrowPeak conservative idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF984LWO 1567383 ENCODE Processing Pipeline 041604a7fe40bbb4aa7059d714e53f1a https://www.encodeproject.org/files/ENCFF544XCR/@@download/ENCFF544XCR.bigBed GRCh38 released missing genetic modification characterization ENCFF213YRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF393CCU 1663248 ENCODE Processing Pipeline c0e64cc52965b727aec172c968c37d76 https://www.encodeproject.org/files/ENCFF213YRQ/@@download/ENCFF213YRQ.bigBed GRCh38 released missing genetic modification characterization ENCFF393CCU bed narrowPeak optimal idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF166ADO, ENCFF271XRG, ENCFF419RSJ, ENCFF748CBU 816340 ENCODE Processing Pipeline 0f9a01aecf249adadda32dae613ae85e https://www.encodeproject.org/files/ENCFF393CCU/@@download/ENCFF393CCU.bed.gz GRCh38 released missing genetic modification characterization ENCFF152GXE bigWig fold change over control ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF308BKD, ENCFF500EQZ, ENCFF743FRI 1581712211 ENCODE Processing Pipeline d9605ab0fada41b89d9d0b592fb83c2d https://www.encodeproject.org/files/ENCFF152GXE/@@download/ENCFF152GXE.bigWig hg19 released missing genetic modification characterization ENCFF361OOM bigBed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF703AYW 13712805 ENCODE Processing Pipeline 9bac9e12841661b6a9c604a7b1f8b785 https://www.encodeproject.org/files/ENCFF361OOM/@@download/ENCFF361OOM.bigBed hg19 released missing genetic modification characterization ENCFF638THQ bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF308BKD, ENCFF500EQZ 6831070 ENCODE Processing Pipeline f0b5bdd047d8393493505853dc72eedc https://www.encodeproject.org/files/ENCFF638THQ/@@download/ENCFF638THQ.bed.gz hg19 released missing genetic modification characterization ENCFF703AYW bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF500EQZ, ENCFF743FRI 6754100 ENCODE Processing Pipeline d8dd05a8c34d3e187849ab51b732871e https://www.encodeproject.org/files/ENCFF703AYW/@@download/ENCFF703AYW.bed.gz hg19 released missing genetic modification characterization ENCFF927JBT bed narrowPeak optimal idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF421KPL, ENCFF638THQ, ENCFF703AYW 830198 ENCODE Processing Pipeline 3767fbcb94979dba34dfa376996af7a6 https://www.encodeproject.org/files/ENCFF927JBT/@@download/ENCFF927JBT.bed.gz hg19 released missing genetic modification characterization ENCFF921SVE bed narrowPeak conservative idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF421KPL, ENCFF638THQ, ENCFF703AYW 761326 ENCODE Processing Pipeline 7ce7acc1806b1034a155c489cdb64ab3 https://www.encodeproject.org/files/ENCFF921SVE/@@download/ENCFF921SVE.bed.gz hg19 released missing genetic modification characterization ENCFF077OWF bigWig signal p-value ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF308BKD, ENCFF500EQZ, ENCFF743FRI 1265070615 ENCODE Processing Pipeline a53c08f98fd7afa1b0aa6f4dc4bc9ab4 https://www.encodeproject.org/files/ENCFF077OWF/@@download/ENCFF077OWF.bigWig hg19 released missing genetic modification characterization ENCFF668ZJU bigBed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF421KPL 13750051 ENCODE Processing Pipeline ce14bab7365ef75155dee01d9f1edd9b https://www.encodeproject.org/files/ENCFF668ZJU/@@download/ENCFF668ZJU.bigBed hg19 released missing genetic modification characterization ENCFF303MOG bigBed narrowPeak optimal idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF927JBT 1678997 ENCODE Processing Pipeline f7e3427088ddb36423267979bde1a37e https://www.encodeproject.org/files/ENCFF303MOG/@@download/ENCFF303MOG.bigBed hg19 released missing genetic modification characterization ENCFF421KPL bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF308BKD, ENCFF500EQZ, ENCFF743FRI 7241734 ENCODE Processing Pipeline 58b8adab70591db2724873566c7f03ac https://www.encodeproject.org/files/ENCFF421KPL/@@download/ENCFF421KPL.bed.gz hg19 released missing genetic modification characterization ENCFF881CUS bigBed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF638THQ 13666100 ENCODE Processing Pipeline 767332a5877cf03411a34d8dc83bf7e5 https://www.encodeproject.org/files/ENCFF881CUS/@@download/ENCFF881CUS.bigBed hg19 released missing genetic modification characterization ENCFF619UGC bigBed narrowPeak conservative idr thresholded peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF921SVE 1571480 ENCODE Processing Pipeline dbf8aa82daea3a24bec4c5aca6969ebd https://www.encodeproject.org/files/ENCFF619UGC/@@download/ENCFF619UGC.bigBed hg19 released missing genetic modification characterization ENCFF316YEK fastq reads ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF512ION 2369600880 Michael Snyder, Stanford e8392db380298b7b14a2240cd4cbf105 SRA:SRR6213837 https://www.encodeproject.org/files/ENCFF316YEK/@@download/ENCFF316YEK.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released ENCFF512ION fastq reads ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF316YEK 2867690169 Michael Snyder, Stanford 4bef93681f9a9cee0f7ff32ccce728d7 SRA:SRR6213837 https://www.encodeproject.org/files/ENCFF512ION/@@download/ENCFF512ION.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released ENCFF509CBV fastq reads ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF399MEA 2649566835 Michael Snyder, Stanford de087686f489511c0f208c29fc5bce36 SRA:SRR6213836 https://www.encodeproject.org/files/ENCFF509CBV/@@download/ENCFF509CBV.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released ENCFF399MEA fastq reads ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF509CBV 3155664205 Michael Snyder, Stanford 37d4bad4ca9301ce9f8ecb67c24c3a30 SRA:SRR6213836 https://www.encodeproject.org/files/ENCFF399MEA/@@download/ENCFF399MEA.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released ENCFF082RTM bam unfiltered alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF399MEA, ENCFF509CBV, ENCFF807MUK 5587725489 ENCODE Processing Pipeline 7cf35d97a4892fc7a751fc61ad3fccf4 https://www.encodeproject.org/files/ENCFF082RTM/@@download/ENCFF082RTM.bam hg19 released ENCFF729OTK bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF399MEA, ENCFF509CBV, ENCFF807MUK 4392752305 ENCODE Processing Pipeline b5b652bc2daaa534e8d8115db58828a3 https://www.encodeproject.org/files/ENCFF729OTK/@@download/ENCFF729OTK.bam hg19 released ENCFF800LNC bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF399MEA, ENCFF509CBV, ENCFF643CGH 4395421470 ENCODE Processing Pipeline ea7fd302fed3e38bc4068c9a8be85ef7 https://www.encodeproject.org/files/ENCFF800LNC/@@download/ENCFF800LNC.bam GRCh38 released ENCFF590WJA bam unfiltered alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF316YEK, ENCFF512ION, ENCFF807MUK 5123073379 ENCODE Processing Pipeline 7acd97cbcb8b7ce2d2b084ef5f105339 https://www.encodeproject.org/files/ENCFF590WJA/@@download/ENCFF590WJA.bam hg19 released ENCFF476SLO bam unfiltered alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF316YEK, ENCFF512ION, ENCFF643CGH 5135501792 ENCODE Processing Pipeline df4aee5a679a8720ed37f4b2e5227833 https://www.encodeproject.org/files/ENCFF476SLO/@@download/ENCFF476SLO.bam GRCh38 released ENCFF458MYQ bam unfiltered alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF399MEA, ENCFF509CBV, ENCFF643CGH 5599706161 ENCODE Processing Pipeline 43662684751383acc7114d593b5a88dd https://www.encodeproject.org/files/ENCFF458MYQ/@@download/ENCFF458MYQ.bam GRCh38 released ENCFF387SQL bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF316YEK, ENCFF512ION, ENCFF643CGH 4226828245 ENCODE Processing Pipeline 9cd92860d51ecb44a977bf6f3b32562e https://www.encodeproject.org/files/ENCFF387SQL/@@download/ENCFF387SQL.bam GRCh38 released ENCFF825FCH bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF316YEK, ENCFF512ION, ENCFF807MUK 4223801495 ENCODE Processing Pipeline bc6ee3ef3506ef53bd017d3995a0d5d2 https://www.encodeproject.org/files/ENCFF825FCH/@@download/ENCFF825FCH.bam hg19 released ENCFF838OQR bigWig signal p-value ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF800LNC 1462712829 ENCODE Processing Pipeline bfb617e4747e49eec62f42ea66dcb736 https://www.encodeproject.org/files/ENCFF838OQR/@@download/ENCFF838OQR.bigWig GRCh38 released ENCFF642GYI bigBed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF602KAG 11474598 ENCODE Processing Pipeline bcf6f95c4c5053f7fbbd4916f9ed9df3 https://www.encodeproject.org/files/ENCFF642GYI/@@download/ENCFF642GYI.bigBed GRCh38 released ENCFF622IVJ bigWig fold change over control ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF800LNC 1691707871 ENCODE Processing Pipeline 4f6b6497152a53e7e6bf35fd2c67166b https://www.encodeproject.org/files/ENCFF622IVJ/@@download/ENCFF622IVJ.bigWig GRCh38 released ENCFF573UYX bigBed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF662JYQ 11392062 ENCODE Processing Pipeline 06636e3d890891996f3bbb0a8da5c371 https://www.encodeproject.org/files/ENCFF573UYX/@@download/ENCFF573UYX.bigBed GRCh38 released ENCFF483HBK bigWig signal p-value ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF191XYH, ENCFF387SQL, ENCFF746SKT 1490310558 ENCODE Processing Pipeline 8a8e0324ae11d49d9c25e696ac7ea718 https://www.encodeproject.org/files/ENCFF483HBK/@@download/ENCFF483HBK.bigWig GRCh38 released ENCFF209XNT bigWig fold change over control ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF191XYH, ENCFF387SQL, ENCFF746SKT 1660766639 ENCODE Processing Pipeline 357d5e55cc9e7ec48561c4f4801a6922 https://www.encodeproject.org/files/ENCFF209XNT/@@download/ENCFF209XNT.bigWig GRCh38 released ENCFF025WWH bigWig signal p-value ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF191XYH, ENCFF387SQL, ENCFF746SKT, ENCFF800LNC 1973241366 ENCODE Processing Pipeline 6c3750cb2188604325fe150017d6ecdd https://www.encodeproject.org/files/ENCFF025WWH/@@download/ENCFF025WWH.bigWig GRCh38 released ENCFF602KAG bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF800LNC 6703474 ENCODE Processing Pipeline e109426f5e9acb89f103814e873d8566 https://www.encodeproject.org/files/ENCFF602KAG/@@download/ENCFF602KAG.bed.gz GRCh38 released ENCFF389OOS bigBed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF745WCA 11537196 ENCODE Processing Pipeline e8b15f9aa09c97024b8a7ece556767bf https://www.encodeproject.org/files/ENCFF389OOS/@@download/ENCFF389OOS.bigBed GRCh38 released ENCFF733PFB bigBed narrowPeak optimal idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF618JNX 410124 ENCODE Processing Pipeline 263c8fab7186b875ee13cb56a5eba7ff https://www.encodeproject.org/files/ENCFF733PFB/@@download/ENCFF733PFB.bigBed GRCh38 released ENCFF982AQL bigWig fold change over control ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF191XYH, ENCFF387SQL, ENCFF746SKT, ENCFF800LNC 2279610507 ENCODE Processing Pipeline de336f7f91560763af0a128ee24c1083 https://www.encodeproject.org/files/ENCFF982AQL/@@download/ENCFF982AQL.bigWig GRCh38 released ENCFF794WMO bigWig signal p-value ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF825FCH 1623306572 ENCODE Processing Pipeline 2feb4ca2aeeeae54340977b547805474 https://www.encodeproject.org/files/ENCFF794WMO/@@download/ENCFF794WMO.bigWig hg19 released ENCFF309GYY bigBed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF758TWM 11513081 ENCODE Processing Pipeline 4577c99ff85e2c7db27a8e98934ed192 https://www.encodeproject.org/files/ENCFF309GYY/@@download/ENCFF309GYY.bigBed hg19 released ENCFF892HSA bed narrowPeak conservative idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF100HDM, ENCFF613VXB, ENCFF758TWM 132996 ENCODE Processing Pipeline 797019e26e925bbbb6ef783167ff3ba1 https://www.encodeproject.org/files/ENCFF892HSA/@@download/ENCFF892HSA.bed.gz hg19 released ENCFF745WCA bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF191XYH, ENCFF387SQL, ENCFF746SKT 6488429 ENCODE Processing Pipeline 55ce99e7359150c77a51d83ddc53a2f3 https://www.encodeproject.org/files/ENCFF745WCA/@@download/ENCFF745WCA.bed.gz GRCh38 released ENCFF090GMA bed narrowPeak conservative idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF602KAG, ENCFF662JYQ, ENCFF745WCA 134272 ENCODE Processing Pipeline 4a3380d7a5618da565f74e3cfb43c20a https://www.encodeproject.org/files/ENCFF090GMA/@@download/ENCFF090GMA.bed.gz GRCh38 released ENCFF662JYQ bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF191XYH, ENCFF387SQL, ENCFF746SKT, ENCFF800LNC 7151846 ENCODE Processing Pipeline 3a24f322a91d9aca5753bdaed7f04af2 https://www.encodeproject.org/files/ENCFF662JYQ/@@download/ENCFF662JYQ.bed.gz GRCh38 released ENCFF794KLK bigBed narrowPeak conservative idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF090GMA 295964 ENCODE Processing Pipeline a880ce4d60b9d76b7bd0614afccbe324 https://www.encodeproject.org/files/ENCFF794KLK/@@download/ENCFF794KLK.bigBed GRCh38 released ENCFF618JNX bed narrowPeak optimal idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF602KAG, ENCFF662JYQ, ENCFF745WCA 209371 ENCODE Processing Pipeline c9bd9619d011c8f92421fe5a857d3005 https://www.encodeproject.org/files/ENCFF618JNX/@@download/ENCFF618JNX.bed.gz GRCh38 released ENCFF285LXM bigWig fold change over control ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF825FCH 1646487361 ENCODE Processing Pipeline ebd2bab1f377241018c877d0e965497f https://www.encodeproject.org/files/ENCFF285LXM/@@download/ENCFF285LXM.bigWig hg19 released ENCFF057ZEE bigWig signal p-value ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR 1572351609 ENCODE Processing Pipeline 9305509fe75a6d8338c78c539371085c https://www.encodeproject.org/files/ENCFF057ZEE/@@download/ENCFF057ZEE.bigWig hg19 released ENCFF867TRD bigWig signal p-value ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR, ENCFF825FCH 1881867030 ENCODE Processing Pipeline 10bffa5177a10a4af7cb7f7082bb8b01 https://www.encodeproject.org/files/ENCFF867TRD/@@download/ENCFF867TRD.bigWig hg19 released ENCFF576OZQ bigWig fold change over control ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR 1672669768 ENCODE Processing Pipeline e85b9d08dec44f873dc63666eb8d6a9b https://www.encodeproject.org/files/ENCFF576OZQ/@@download/ENCFF576OZQ.bigWig hg19 released ENCFF968EXO bigWig fold change over control ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR, ENCFF825FCH 2295810805 ENCODE Processing Pipeline 5e544a8aaede38676ede70ecda9d51fe https://www.encodeproject.org/files/ENCFF968EXO/@@download/ENCFF968EXO.bigWig hg19 released ENCFF758TWM bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF825FCH 6485276 ENCODE Processing Pipeline 16d96883d63ca8def66df09137837f36 https://www.encodeproject.org/files/ENCFF758TWM/@@download/ENCFF758TWM.bed.gz hg19 released ENCFF100HDM bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR 6698226 ENCODE Processing Pipeline 72f03ed135282e066c247a4785adffeb https://www.encodeproject.org/files/ENCFF100HDM/@@download/ENCFF100HDM.bed.gz hg19 released ENCFF613VXB bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR, ENCFF825FCH 7146356 ENCODE Processing Pipeline 1f1f298067472b9f926fd2a1e3abd54f https://www.encodeproject.org/files/ENCFF613VXB/@@download/ENCFF613VXB.bed.gz hg19 released ENCFF933IWX bigBed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF100HDM 11452614 ENCODE Processing Pipeline d6d902c7bee5fd55493457aa88c502d1 https://www.encodeproject.org/files/ENCFF933IWX/@@download/ENCFF933IWX.bigBed hg19 released ENCFF295TXM bigBed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF613VXB 11372682 ENCODE Processing Pipeline d0df32f13c745f3be703ac00faf5c75b https://www.encodeproject.org/files/ENCFF295TXM/@@download/ENCFF295TXM.bigBed hg19 released ENCFF316KXT bigBed narrowPeak conservative idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF892HSA 291485 ENCODE Processing Pipeline 683c3c26fd9c5ed7cf0583c7de60dfe2 https://www.encodeproject.org/files/ENCFF316KXT/@@download/ENCFF316KXT.bigBed hg19 released ENCFF351NCM bed narrowPeak optimal idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF100HDM, ENCFF613VXB, ENCFF758TWM 208987 ENCODE Processing Pipeline 54b91aed2166e569f01d0ca36a259823 https://www.encodeproject.org/files/ENCFF351NCM/@@download/ENCFF351NCM.bed.gz hg19 released ENCFF145GCE bigBed narrowPeak optimal idr thresholded peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF351NCM 406880 ENCODE Processing Pipeline c3def99469c3185e4a53938b2c1696f6 https://www.encodeproject.org/files/ENCFF145GCE/@@download/ENCFF145GCE.bigBed hg19 released ENCFF720JWD bam alignments ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF451LIG, ENCFF807MUK, ENCFF851YSO 2515667762 ENCODE Processing Pipeline bf883225d2732cf2716c7a4e275f2e06 https://www.encodeproject.org/files/ENCFF720JWD/@@download/ENCFF720JWD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF112RDQ bam unfiltered alignments ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF451LIG, ENCFF643CGH, ENCFF851YSO 3888404132 ENCODE Processing Pipeline 53ffe6fc3c95eb613f58dd6b018d6740 https://www.encodeproject.org/files/ENCFF112RDQ/@@download/ENCFF112RDQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF451LIG fastq reads ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF851YSO 2181220192 Michael Snyder, Stanford 63286c3d50222b6f08603e922d9e396b SRA:SRR6212615 https://www.encodeproject.org/files/ENCFF451LIG/@@download/ENCFF451LIG.fastq.gz Illumina HiSeq 4000 /files/ENCFF449AND/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF167NTI bam alignments ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF451LIG, ENCFF643CGH, ENCFF851YSO 2519291132 ENCODE Processing Pipeline c37f9899ac8ec219a350a89360b6c1e8 https://www.encodeproject.org/files/ENCFF167NTI/@@download/ENCFF167NTI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF723XAP bam unfiltered alignments ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF451LIG, ENCFF807MUK, ENCFF851YSO 3889694042 ENCODE Processing Pipeline a3bb8f4755c816e2b2e188b578ca19d7 https://www.encodeproject.org/files/ENCFF723XAP/@@download/ENCFF723XAP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF851YSO fastq reads ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF451LIG 2139451127 Michael Snyder, Stanford 004636d11536ef16dd19d9e38ac4ec94 SRA:SRR6212615 https://www.encodeproject.org/files/ENCFF851YSO/@@download/ENCFF851YSO.fastq.gz Illumina HiSeq 4000 /files/ENCFF133DKP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF491HRO bigWig signal p-value ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF385SNU, ENCFF720JWD 872069550 ENCODE Processing Pipeline 18931fe959e9ba2b8ef9e27e64e043df https://www.encodeproject.org/files/ENCFF491HRO/@@download/ENCFF491HRO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF549AEG bigWig fold change over control ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF385SNU, ENCFF720JWD 931583137 ENCODE Processing Pipeline 2edca8f4182b0db606cfb008d0d7a908 https://www.encodeproject.org/files/ENCFF549AEG/@@download/ENCFF549AEG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF483EHQ bed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF385SNU, ENCFF720JWD 5252425 ENCODE Processing Pipeline 6cb07ba566d736d39e27317f97de5023 https://www.encodeproject.org/files/ENCFF483EHQ/@@download/ENCFF483EHQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF390XOX bigBed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF483EHQ 11472540 ENCODE Processing Pipeline f8c2a05c2151c0a2662e200d4e45b3d9 https://www.encodeproject.org/files/ENCFF390XOX/@@download/ENCFF390XOX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF454PSG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF001TDO, ENCFF483EHQ 123602 ENCODE Processing Pipeline c2a2d850376b23ad961c3a396510ad04 https://www.encodeproject.org/files/ENCFF454PSG/@@download/ENCFF454PSG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF329QVF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF454PSG 241631 ENCODE Processing Pipeline f669e7d945922033f854e80e31c69df3 https://www.encodeproject.org/files/ENCFF329QVF/@@download/ENCFF329QVF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF669IHZ bigWig signal p-value ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF167NTI, ENCFF576CMR 1014711879 ENCODE Processing Pipeline c04dd115fed800d95f8e59857ce489ca https://www.encodeproject.org/files/ENCFF669IHZ/@@download/ENCFF669IHZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF304IIJ bigWig fold change over control ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF167NTI, ENCFF576CMR 937765044 ENCODE Processing Pipeline c4f7d212006113e9cd49f7555edab45f https://www.encodeproject.org/files/ENCFF304IIJ/@@download/ENCFF304IIJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF737SPJ bed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF167NTI, ENCFF576CMR 5256438 ENCODE Processing Pipeline 12d8b8b2e7c6a705ea5cf4e800437a10 https://www.encodeproject.org/files/ENCFF737SPJ/@@download/ENCFF737SPJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF577ZAZ bigBed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF737SPJ 11498104 ENCODE Processing Pipeline 86f74c4c8aaa28c010be4bd7daebea3a https://www.encodeproject.org/files/ENCFF577ZAZ/@@download/ENCFF577ZAZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF157OEN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF419RSJ, ENCFF737SPJ 121698 ENCODE Processing Pipeline 27fffd9e0db4985d4c62405ba7f0bfb7 https://www.encodeproject.org/files/ENCFF157OEN/@@download/ENCFF157OEN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF009NUO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF157OEN 241188 ENCODE Processing Pipeline 4c2bb6552d9f7b79b8cb7c31b12f5d3d https://www.encodeproject.org/files/ENCFF009NUO/@@download/ENCFF009NUO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000CAM bigBed broadPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SZW 483532 Bradley Bernstein, Broad 6ae417735059766b6052e693b70a20cd https://www.encodeproject.org/files/ENCFF000CAM/@@download/ENCFF000CAM.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000CAN bam alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CAY 1214069729 Bradley Bernstein, Broad afb92bc972fe313e52a94addd92b7bc8 https://www.encodeproject.org/files/ENCFF000CAN/@@download/ENCFF000CAN.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000CAO bigWig signal ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 284048629 Bradley Bernstein, Broad 13727febf5e5662603c3cd8528901699 https://www.encodeproject.org/files/ENCFF000CAO/@@download/ENCFF000CAO.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF000CAY fastq reads ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1393101507 Bradley Bernstein, Broad f11840c9166c7580f06365f097d93c2a https://www.encodeproject.org/files/ENCFF000CAY/@@download/ENCFF000CAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BWK/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001SZW bed broadPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 271621 Bradley Bernstein, Broad bad872a118472f6f2d6a471a53ca24a6 https://www.encodeproject.org/files/ENCFF001SZW/@@download/ENCFF001SZW.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF786MVA bam unfiltered alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAY, ENCFF807MUK 1674381976 ENCODE Processing Pipeline c14e87b52fb5ad2956c56d42e623a329 https://www.encodeproject.org/files/ENCFF786MVA/@@download/ENCFF786MVA.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF645NAU bam alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAY, ENCFF807MUK 616156307 ENCODE Processing Pipeline c817b09042e12a758fa1e983581628da https://www.encodeproject.org/files/ENCFF645NAU/@@download/ENCFF645NAU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF570SBS bam alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAY, ENCFF643CGH 615697818 ENCODE Processing Pipeline 150808551513688af73a414c6c5ca00d https://www.encodeproject.org/files/ENCFF570SBS/@@download/ENCFF570SBS.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF303ZPD bam unfiltered alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAY, ENCFF643CGH 1683338488 ENCODE Processing Pipeline 82d19bea1b5752d05f0fc0058712f0d6 https://www.encodeproject.org/files/ENCFF303ZPD/@@download/ENCFF303ZPD.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF237DHH bed narrowPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF645NAU 4165936 ENCODE Processing Pipeline 6d3d34236cac327fb84020fdc4290f13 https://www.encodeproject.org/files/ENCFF237DHH/@@download/ENCFF237DHH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF002UJF bigWig signal p-value ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF645NAU 310540041 ENCODE Processing Pipeline 72c51336d392918d96f8990bd5554b53 https://www.encodeproject.org/files/ENCFF002UJF/@@download/ENCFF002UJF.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF164NLF bigWig fold change over control ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF645NAU 261967952 ENCODE Processing Pipeline 2eb5c15065df9551653c2d81cf1326a7 https://www.encodeproject.org/files/ENCFF164NLF/@@download/ENCFF164NLF.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF153KKB bigBed narrowPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF237DHH 10433388 ENCODE Processing Pipeline cdb3211e11a4a4df5ef547cdabf0f74b https://www.encodeproject.org/files/ENCFF153KKB/@@download/ENCFF153KKB.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF185GBT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF237DHH 13696 ENCODE Processing Pipeline ebc0369b852af0b1bf608185e289498d https://www.encodeproject.org/files/ENCFF185GBT/@@download/ENCFF185GBT.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF395UJA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF185GBT 75057 ENCODE Processing Pipeline 9611abd7b8f47d7d3ba868427ed6e429 https://www.encodeproject.org/files/ENCFF395UJA/@@download/ENCFF395UJA.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF934JGA bigWig signal p-value ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF570SBS 284155964 ENCODE Processing Pipeline 82ac7e76240f3612dfc8e0b01392d820 https://www.encodeproject.org/files/ENCFF934JGA/@@download/ENCFF934JGA.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF827SHX bed narrowPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF570SBS 4060065 ENCODE Processing Pipeline f4e84522bcad67c9fff48c3f06a69e1c https://www.encodeproject.org/files/ENCFF827SHX/@@download/ENCFF827SHX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF133TDD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF556XQQ 72801 ENCODE Processing Pipeline 8f031cb0e0f3176a006a1660e39cfb6e https://www.encodeproject.org/files/ENCFF133TDD/@@download/ENCFF133TDD.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF517EVJ bigBed narrowPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF827SHX 10247416 ENCODE Processing Pipeline 7aff3ccde9974178fc8e6cd2b8d24e85 https://www.encodeproject.org/files/ENCFF517EVJ/@@download/ENCFF517EVJ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF556XQQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF827SHX 12008 ENCODE Processing Pipeline ddf35125c16f920351fcf382e610ebef https://www.encodeproject.org/files/ENCFF556XQQ/@@download/ENCFF556XQQ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF624BHU bigWig fold change over control ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF570SBS 262566478 ENCODE Processing Pipeline f2e044bd18206e1ccabec6776ca0355c https://www.encodeproject.org/files/ENCFF624BHU/@@download/ENCFF624BHU.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF325DTB fastq reads ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF749RRK 1240437687 Michael Snyder, Stanford 177e498de2c125ec6a04e51c5c7068d0 SRA:SRR5111471 https://www.encodeproject.org/files/ENCFF325DTB/@@download/ENCFF325DTB.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, low read depth ENCFF076YGT fastq reads ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF380PYR 3587655202 Michael Snyder, Stanford e680f88189fd28936aa5953ca2189c06 SRA:SRR5111472 https://www.encodeproject.org/files/ENCFF076YGT/@@download/ENCFF076YGT.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, low read depth ENCFF749RRK fastq reads ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF325DTB 1117272403 Michael Snyder, Stanford ec6465453aefbdf90412ed2424114ee4 SRA:SRR5111471 https://www.encodeproject.org/files/ENCFF749RRK/@@download/ENCFF749RRK.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, low read depth ENCFF380PYR fastq reads ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF076YGT 3808846823 Michael Snyder, Stanford 12d1bed63acc1580aa1c327f2a1549e5 SRA:SRR5111472 https://www.encodeproject.org/files/ENCFF380PYR/@@download/ENCFF380PYR.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, low read depth ENCFF163ARJ bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 100 ENCFF325DTB, ENCFF749RRK, ENCFF807MUK 1895864682 ENCODE Processing Pipeline cee74e01b41e65e84fb825123154fabc https://www.encodeproject.org/files/ENCFF163ARJ/@@download/ENCFF163ARJ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF472UWP bam unfiltered alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 100 ENCFF076YGT, ENCFF380PYR, ENCFF807MUK 6870059386 ENCODE Processing Pipeline 438c9078121a7f4837e524736621cccf https://www.encodeproject.org/files/ENCFF472UWP/@@download/ENCFF472UWP.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF464JSQ bam unfiltered alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 100 ENCFF325DTB, ENCFF643CGH, ENCFF749RRK 2377299316 ENCODE Processing Pipeline ccbfc113540498a89de7540e1ba4ee44 https://www.encodeproject.org/files/ENCFF464JSQ/@@download/ENCFF464JSQ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF552FSK bam unfiltered alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 100 ENCFF325DTB, ENCFF749RRK, ENCFF807MUK 2374588435 ENCODE Processing Pipeline c666d188c6b2a255b1f774539ddd4097 https://www.encodeproject.org/files/ENCFF552FSK/@@download/ENCFF552FSK.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF904OXK bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 100 ENCFF325DTB, ENCFF643CGH, ENCFF749RRK 1897347970 ENCODE Processing Pipeline 3e656a2cd3cd0b5f934b75c2bc387942 https://www.encodeproject.org/files/ENCFF904OXK/@@download/ENCFF904OXK.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF284AJX bam unfiltered alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 100 ENCFF076YGT, ENCFF380PYR, ENCFF643CGH 6873905905 ENCODE Processing Pipeline 9b6cc06d7658b107c963031456abb82b https://www.encodeproject.org/files/ENCFF284AJX/@@download/ENCFF284AJX.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF290MFM bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 100 ENCFF076YGT, ENCFF380PYR, ENCFF807MUK 4693498249 ENCODE Processing Pipeline dd72f6a25a0e0f1df274b0f904fd02f3 https://www.encodeproject.org/files/ENCFF290MFM/@@download/ENCFF290MFM.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF077NYA bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 100 ENCFF076YGT, ENCFF380PYR, ENCFF643CGH 4697667356 ENCODE Processing Pipeline c34bb214c8b862fd5c5faf573b383fc0 https://www.encodeproject.org/files/ENCFF077NYA/@@download/ENCFF077NYA.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF958NIG bigWig signal p-value ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF163ARJ 966121248 ENCODE Processing Pipeline 1e1bdc656441682858ff40fe7289167c https://www.encodeproject.org/files/ENCFF958NIG/@@download/ENCFF958NIG.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF844XBQ bigWig signal p-value ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF163ARJ, ENCFF290MFM, ENCFF834TUP 1721344413 ENCODE Processing Pipeline 8dc39ae7d04e915d9d3d8c0f9195eb8c https://www.encodeproject.org/files/ENCFF844XBQ/@@download/ENCFF844XBQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF750INL bigWig signal p-value ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF290MFM, ENCFF834TUP 1507626772 ENCODE Processing Pipeline 3847011724c5d51931298ecbec0d1956 https://www.encodeproject.org/files/ENCFF750INL/@@download/ENCFF750INL.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF551DCQ bigWig fold change over control ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF290MFM, ENCFF834TUP 1913710934 ENCODE Processing Pipeline a8901b7b6922fc57b084adc90374b1f1 https://www.encodeproject.org/files/ENCFF551DCQ/@@download/ENCFF551DCQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF406JQQ bigWig fold change over control ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF163ARJ 813965046 ENCODE Processing Pipeline 2290586a58587dd6b51a475c17365d22 https://www.encodeproject.org/files/ENCFF406JQQ/@@download/ENCFF406JQQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF559KAV bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF290MFM, ENCFF834TUP 7220426 ENCODE Processing Pipeline 67f2d90491c50a8dd513d9433326ee96 https://www.encodeproject.org/files/ENCFF559KAV/@@download/ENCFF559KAV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF861KBO bigBed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF820UXS 13931850 ENCODE Processing Pipeline a6b8127c8f422235e88b8706aa50f3c8 https://www.encodeproject.org/files/ENCFF861KBO/@@download/ENCFF861KBO.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF996ZGL bed narrowPeak optimal idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF486RQW, ENCFF559KAV, ENCFF820UXS 1088718 ENCODE Processing Pipeline 7dc77d245f171e4a785144bb7ec5342c https://www.encodeproject.org/files/ENCFF996ZGL/@@download/ENCFF996ZGL.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF820UXS bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF163ARJ, ENCFF290MFM, ENCFF834TUP 7233158 ENCODE Processing Pipeline bee511eb11daba31bae945c82eaebc64 https://www.encodeproject.org/files/ENCFF820UXS/@@download/ENCFF820UXS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF219HQE bigWig fold change over control ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF163ARJ, ENCFF290MFM, ENCFF834TUP 2126063930 ENCODE Processing Pipeline cc34720919fb91657a7a59db74789721 https://www.encodeproject.org/files/ENCFF219HQE/@@download/ENCFF219HQE.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF602NCB bed narrowPeak conservative idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF486RQW, ENCFF559KAV, ENCFF820UXS 871663 ENCODE Processing Pipeline 69cc024cd6a350ea564706807f60c6f1 https://www.encodeproject.org/files/ENCFF602NCB/@@download/ENCFF602NCB.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF486RQW bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF163ARJ 6476407 ENCODE Processing Pipeline fbfee1e1f572133bd719fcf43a6ed903 https://www.encodeproject.org/files/ENCFF486RQW/@@download/ENCFF486RQW.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF633RQU bigBed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF486RQW 13593993 ENCODE Processing Pipeline 2e71c289c105b5dda407dbcf9ef342c0 https://www.encodeproject.org/files/ENCFF633RQU/@@download/ENCFF633RQU.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF304UPC bigBed narrowPeak optimal idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF996ZGL 2133445 ENCODE Processing Pipeline 4276dfa9ab28139a6c29d47a494f0d84 https://www.encodeproject.org/files/ENCFF304UPC/@@download/ENCFF304UPC.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF178UHY bigBed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF559KAV 13886616 ENCODE Processing Pipeline 7f613d99189c86ce6d3d88398bea79f2 https://www.encodeproject.org/files/ENCFF178UHY/@@download/ENCFF178UHY.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF826NFI bigBed narrowPeak conservative idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF602NCB 1792282 ENCODE Processing Pipeline 8d37b0870a550b545b75b76f86fd610c https://www.encodeproject.org/files/ENCFF826NFI/@@download/ENCFF826NFI.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF517WFZ bigWig signal p-value ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF077NYA, ENCFF712WXB, ENCFF790TAN 1740226530 ENCODE Processing Pipeline 43b7a30a22440d071648f1c5b03d1eeb https://www.encodeproject.org/files/ENCFF517WFZ/@@download/ENCFF517WFZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF197TSC bigWig signal p-value ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF790TAN, ENCFF904OXK 959208657 ENCODE Processing Pipeline 0c2bbaf058472ffce29a1461c27fc58a https://www.encodeproject.org/files/ENCFF197TSC/@@download/ENCFF197TSC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF141UIY bigWig signal p-value ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF077NYA, ENCFF712WXB, ENCFF790TAN, ENCFF904OXK 1690670908 ENCODE Processing Pipeline 5464db21610a7de13749be01af8158dd https://www.encodeproject.org/files/ENCFF141UIY/@@download/ENCFF141UIY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF675FVS bigWig fold change over control ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF077NYA, ENCFF712WXB, ENCFF790TAN 1914988828 ENCODE Processing Pipeline 873ec93387921282fe319e1b769a7633 https://www.encodeproject.org/files/ENCFF675FVS/@@download/ENCFF675FVS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF856HEX bigWig fold change over control ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF790TAN, ENCFF904OXK 812100136 ENCODE Processing Pipeline cd0618493b5c1607ca366502240e0277 https://www.encodeproject.org/files/ENCFF856HEX/@@download/ENCFF856HEX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF210EVB bigWig fold change over control ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF077NYA, ENCFF712WXB, ENCFF790TAN, ENCFF904OXK 2116715826 ENCODE Processing Pipeline 778bebbed9264d25bf158ed7b687d984 https://www.encodeproject.org/files/ENCFF210EVB/@@download/ENCFF210EVB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF839JZV bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF077NYA, ENCFF712WXB, ENCFF790TAN 7141204 ENCODE Processing Pipeline 476ac3e0225d92a71fd82a03729d3ab5 https://www.encodeproject.org/files/ENCFF839JZV/@@download/ENCFF839JZV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF610EDP bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF790TAN, ENCFF904OXK 6329803 ENCODE Processing Pipeline a6ff5eb80f5b136d4580ccaaaad7b699 https://www.encodeproject.org/files/ENCFF610EDP/@@download/ENCFF610EDP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF184OEL bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF077NYA, ENCFF712WXB, ENCFF790TAN, ENCFF904OXK 7208505 ENCODE Processing Pipeline a3aba52733269e8b29fa4155ec7b72a4 https://www.encodeproject.org/files/ENCFF184OEL/@@download/ENCFF184OEL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF531NHZ bigBed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF839JZV 13813020 ENCODE Processing Pipeline 78e6e89186ed882c41976b8a20fbc5a9 https://www.encodeproject.org/files/ENCFF531NHZ/@@download/ENCFF531NHZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF776VQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF104MXG 2143223 ENCODE Processing Pipeline cc3968d306dec46cebb4d507f0cff28c https://www.encodeproject.org/files/ENCFF776VQJ/@@download/ENCFF776VQJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF964LCJ bigBed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF610EDP 13517973 ENCODE Processing Pipeline 98ac1ec7eb6c63f433ec0f4631431aed https://www.encodeproject.org/files/ENCFF964LCJ/@@download/ENCFF964LCJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF825LBQ bed narrowPeak conservative idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF184OEL, ENCFF419RSJ, ENCFF610EDP, ENCFF839JZV 868829 ENCODE Processing Pipeline 5a251b14e8176d83630b79dd1f79a9e4 https://www.encodeproject.org/files/ENCFF825LBQ/@@download/ENCFF825LBQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF104MXG bed narrowPeak optimal idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF184OEL, ENCFF419RSJ, ENCFF610EDP, ENCFF839JZV 1093881 ENCODE Processing Pipeline deefb2b075a1019cafbcf0117822e8dc https://www.encodeproject.org/files/ENCFF104MXG/@@download/ENCFF104MXG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF839VXE bigBed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF184OEL 13918958 ENCODE Processing Pipeline 0947695230f9dd5cd08875641a60dd07 https://www.encodeproject.org/files/ENCFF839VXE/@@download/ENCFF839VXE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF129HUO bigBed narrowPeak conservative idr thresholded peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF825LBQ 1790195 ENCODE Processing Pipeline 7c282d44c3a3866b2191a8ef9757d79a https://www.encodeproject.org/files/ENCFF129HUO/@@download/ENCFF129HUO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF034MRJ bam unfiltered alignments ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF531WQP, ENCFF590HVE, ENCFF643CGH 4238220852 ENCODE Processing Pipeline bb7af08de3886ffb5fca1f220d62a21b https://www.encodeproject.org/files/ENCFF034MRJ/@@download/ENCFF034MRJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565VSK bam alignments ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF531WQP, ENCFF590HVE, ENCFF807MUK 2985009116 ENCODE Processing Pipeline d5f764192f0c491d0d7b20a6f8507523 https://www.encodeproject.org/files/ENCFF565VSK/@@download/ENCFF565VSK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF551QCP bam alignments ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF531WQP, ENCFF590HVE, ENCFF643CGH 2988508711 ENCODE Processing Pipeline f748911c9b4b15e90f18caaafcf2e9fa https://www.encodeproject.org/files/ENCFF551QCP/@@download/ENCFF551QCP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF202APA bam unfiltered alignments ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF531WQP, ENCFF590HVE, ENCFF807MUK 4237271105 ENCODE Processing Pipeline 259a289efb80317c10941fec9e19bc16 https://www.encodeproject.org/files/ENCFF202APA/@@download/ENCFF202APA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF590HVE fastq reads ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF531WQP 2520703380 Michael Snyder, Stanford 63c45330ed4e798471c759b00863b4ff SRA:SRR6213545 https://www.encodeproject.org/files/ENCFF590HVE/@@download/ENCFF590HVE.fastq.gz Illumina HiSeq 4000 /files/ENCFF557MYB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF531WQP fastq reads ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF590HVE 2193988116 Michael Snyder, Stanford d6c66d59d9aec9775c9a89b0e177c123 SRA:SRR6213545 https://www.encodeproject.org/files/ENCFF531WQP/@@download/ENCFF531WQP.fastq.gz Illumina HiSeq 4000 /files/ENCFF962LAJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF040KUU bigWig signal p-value ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF460DKV, ENCFF565VSK 1089595260 ENCODE Processing Pipeline da9be6e06103e4e967630f45440401d9 https://www.encodeproject.org/files/ENCFF040KUU/@@download/ENCFF040KUU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF245IPV bed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF460DKV, ENCFF565VSK 6203883 ENCODE Processing Pipeline 486085900f1e799fbf005557f81f9503 https://www.encodeproject.org/files/ENCFF245IPV/@@download/ENCFF245IPV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF744VAQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF603KUP 1064060 ENCODE Processing Pipeline 217c27603c7b7eea4bb86ed581ae6f3e https://www.encodeproject.org/files/ENCFF744VAQ/@@download/ENCFF744VAQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF336EEL bigWig fold change over control ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF460DKV, ENCFF565VSK 1212047826 ENCODE Processing Pipeline 1ae82bfa1246cbd254770707a8a0206c https://www.encodeproject.org/files/ENCFF336EEL/@@download/ENCFF336EEL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF603KUP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF001TDO, ENCFF245IPV 584980 ENCODE Processing Pipeline 3f38d4766c990384b9a026f9a7e38585 https://www.encodeproject.org/files/ENCFF603KUP/@@download/ENCFF603KUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF570YXD bigBed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF245IPV 11658595 ENCODE Processing Pipeline 50f62acae217dc4d6e738a39fd713d6e https://www.encodeproject.org/files/ENCFF570YXD/@@download/ENCFF570YXD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF100EID bigWig signal p-value ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF551QCP, ENCFF983YSS 1302045057 ENCODE Processing Pipeline 6b2692877edb601015eda5429ae0e78e https://www.encodeproject.org/files/ENCFF100EID/@@download/ENCFF100EID.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF328CQQ bigWig fold change over control ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF551QCP, ENCFF983YSS 1219596296 ENCODE Processing Pipeline 150e9279438e61506bf5362245cf08e8 https://www.encodeproject.org/files/ENCFF328CQQ/@@download/ENCFF328CQQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF490PIH bed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF551QCP, ENCFF983YSS 6207428 ENCODE Processing Pipeline 5173365e3a51bbed46694aa5f02833d1 https://www.encodeproject.org/files/ENCFF490PIH/@@download/ENCFF490PIH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF271CRK bigBed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF490PIH 11677151 ENCODE Processing Pipeline 06d385338f62baf5cbdfab5614249ebe https://www.encodeproject.org/files/ENCFF271CRK/@@download/ENCFF271CRK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF951SRP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF419RSJ, ENCFF490PIH 581481 ENCODE Processing Pipeline 529d042fdf32c85419a95d5c3e9e0954 https://www.encodeproject.org/files/ENCFF951SRP/@@download/ENCFF951SRP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF105WAR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF951SRP 1062538 ENCODE Processing Pipeline eb569f137eea1790bfb824855e35e234 https://www.encodeproject.org/files/ENCFF105WAR/@@download/ENCFF105WAR.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF064QDV bam unfiltered alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 100 ENCFF315YLZ, ENCFF649JEY, ENCFF807MUK 6304596924 ENCODE Processing Pipeline 94c9338d55f15e24b47f5b218dd15d6f https://www.encodeproject.org/files/ENCFF064QDV/@@download/ENCFF064QDV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF274ANJ bam unfiltered alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 100 ENCFF150HAD, ENCFF768KWX, ENCFF807MUK 5411375170 ENCODE Processing Pipeline 190f13f8908155546553af4443b72673 https://www.encodeproject.org/files/ENCFF274ANJ/@@download/ENCFF274ANJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF649JEY fastq reads ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF315YLZ 2961256919 Michael Snyder, Stanford b283bd5e16a084d062b0df62d7a8f89a SRA:SRR5111551 https://www.encodeproject.org/files/ENCFF649JEY/@@download/ENCFF649JEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF422LHF/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF315YLZ fastq reads ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF649JEY 2986170556 Michael Snyder, Stanford 8b09014cbca8db7c73b3dceefb72ad7e SRA:SRR5111551 https://www.encodeproject.org/files/ENCFF315YLZ/@@download/ENCFF315YLZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF427TUR/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF768KWX fastq reads ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF150HAD 2555218979 Michael Snyder, Stanford 6580b1cf0e62c791059f18cad8785c96 SRA:SRR5111550 https://www.encodeproject.org/files/ENCFF768KWX/@@download/ENCFF768KWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF422LHF/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF150HAD fastq reads ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF768KWX 2426677381 Michael Snyder, Stanford 580a05c585b6541ed654fc552283b598 SRA:SRR5111550 https://www.encodeproject.org/files/ENCFF150HAD/@@download/ENCFF150HAD.fastq.gz Illumina HiSeq 2000 /files/ENCFF427TUR/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF137WND bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 100 ENCFF315YLZ, ENCFF649JEY, ENCFF807MUK 4277753557 ENCODE Processing Pipeline dd860b59a0b5d4e2ddf800c445cbed88 https://www.encodeproject.org/files/ENCFF137WND/@@download/ENCFF137WND.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF180VYU bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 100 ENCFF150HAD, ENCFF768KWX, ENCFF807MUK 4144058808 ENCODE Processing Pipeline c99c8a6ca1afbed1add1239cb5a09c0b https://www.encodeproject.org/files/ENCFF180VYU/@@download/ENCFF180VYU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF266WWG bigWig signal p-value ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF004VBD, ENCFF180VYU 973820071 ENCODE Processing Pipeline 1eeb659e397d335a502eac18761f6c84 https://www.encodeproject.org/files/ENCFF266WWG/@@download/ENCFF266WWG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF196WCU bigWig signal p-value ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF004VBD, ENCFF137WND, ENCFF180VYU 950942291 ENCODE Processing Pipeline d308bbb72ceb46fcc0a3eba9c1aea8a5 https://www.encodeproject.org/files/ENCFF196WCU/@@download/ENCFF196WCU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF688IKM bigWig fold change over control ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF004VBD, ENCFF180VYU 946744939 ENCODE Processing Pipeline 60bdb24c63aa2eb9a5ea92e4e068a97c https://www.encodeproject.org/files/ENCFF688IKM/@@download/ENCFF688IKM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF056OBU bigWig fold change over control ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF004VBD, ENCFF137WND, ENCFF180VYU 1440614044 ENCODE Processing Pipeline 2d57e9967e058b88da7780cee49061a0 https://www.encodeproject.org/files/ENCFF056OBU/@@download/ENCFF056OBU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF609XXU bam unfiltered alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 100 ENCFF150HAD, ENCFF643CGH, ENCFF768KWX 5417523583 ENCODE Processing Pipeline 9b07e40fd24c10342928ad43b3069aec https://www.encodeproject.org/files/ENCFF609XXU/@@download/ENCFF609XXU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF279FNY bam unfiltered alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 100 ENCFF315YLZ, ENCFF643CGH, ENCFF649JEY 6312181336 ENCODE Processing Pipeline 03e21f63743bafd44463a2b414d06d60 https://www.encodeproject.org/files/ENCFF279FNY/@@download/ENCFF279FNY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF434YXL bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 100 ENCFF150HAD, ENCFF643CGH, ENCFF768KWX 4148204325 ENCODE Processing Pipeline b06bbe88cf322187b93063b771d5ae39 https://www.encodeproject.org/files/ENCFF434YXL/@@download/ENCFF434YXL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF649ORS bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 100 ENCFF315YLZ, ENCFF643CGH, ENCFF649JEY 4280927008 ENCODE Processing Pipeline c06303bcd9e0c65b9a75b913fc0e76c6 https://www.encodeproject.org/files/ENCFF649ORS/@@download/ENCFF649ORS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF266LKH bigWig signal p-value ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF434YXL, ENCFF868RUE 966795762 ENCODE Processing Pipeline 5eacc2123d4847a6291925128139904e https://www.encodeproject.org/files/ENCFF266LKH/@@download/ENCFF266LKH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF039MYZ bigWig signal p-value ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF649ORS, ENCFF868RUE 879868253 ENCODE Processing Pipeline 4e2c8784cb5eebcd18bec45337d146e7 https://www.encodeproject.org/files/ENCFF039MYZ/@@download/ENCFF039MYZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF931DND bigWig signal p-value ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF434YXL, ENCFF649ORS, ENCFF868RUE 943719656 ENCODE Processing Pipeline 5e75f792ac8064f5eebb85262af68c68 https://www.encodeproject.org/files/ENCFF931DND/@@download/ENCFF931DND.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF393JHF bigWig fold change over control ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF434YXL, ENCFF868RUE 926672629 ENCODE Processing Pipeline 16cd7f03c093ecd44fa60f3ac440cf3d https://www.encodeproject.org/files/ENCFF393JHF/@@download/ENCFF393JHF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF503YUA bigWig fold change over control ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF649ORS, ENCFF868RUE 908445949 ENCODE Processing Pipeline 2a662c150e1200026c8a3edc209cc3ec https://www.encodeproject.org/files/ENCFF503YUA/@@download/ENCFF503YUA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF035DWJ bigWig fold change over control ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF434YXL, ENCFF649ORS, ENCFF868RUE 1431254028 ENCODE Processing Pipeline 2914340e6925fd217acc3e5520c7363d https://www.encodeproject.org/files/ENCFF035DWJ/@@download/ENCFF035DWJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF206HKM bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF649ORS, ENCFF868RUE 5669748 ENCODE Processing Pipeline aefa36ddf6a836ac8d1144605c15aeb9 https://www.encodeproject.org/files/ENCFF206HKM/@@download/ENCFF206HKM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF915NAK bigBed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF411LUB 11222259 ENCODE Processing Pipeline 3a056e812af2bc68ec0fa35ac3470636 https://www.encodeproject.org/files/ENCFF915NAK/@@download/ENCFF915NAK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF883HIZ bigBed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF206HKM 11356898 ENCODE Processing Pipeline c7b300acf428eaba01be7d06ef9c8a8c https://www.encodeproject.org/files/ENCFF883HIZ/@@download/ENCFF883HIZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF411LUB bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF434YXL, ENCFF868RUE 5926498 ENCODE Processing Pipeline 1dea257ccdec471727324e2118eaa620 https://www.encodeproject.org/files/ENCFF411LUB/@@download/ENCFF411LUB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF622IWJ bigBed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF820LPI 11049506 ENCODE Processing Pipeline 38338218ddc4cbac7521a0759fd4c155 https://www.encodeproject.org/files/ENCFF622IWJ/@@download/ENCFF622IWJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF820LPI bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF434YXL, ENCFF649ORS, ENCFF868RUE 6651178 ENCODE Processing Pipeline 9116989795d89e8d0b07a3c1431a7695 https://www.encodeproject.org/files/ENCFF820LPI/@@download/ENCFF820LPI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF933JEI bigBed narrowPeak conservative idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF552LKV 221279 ENCODE Processing Pipeline 9b5ec4da63834cc008c8b8253a1990b7 https://www.encodeproject.org/files/ENCFF933JEI/@@download/ENCFF933JEI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF720FJY bed narrowPeak optimal idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF206HKM, ENCFF411LUB, ENCFF419RSJ, ENCFF820LPI 118476 ENCODE Processing Pipeline 3baec9b447c1c7946e00c8d364b23f1b https://www.encodeproject.org/files/ENCFF720FJY/@@download/ENCFF720FJY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF552LKV bed narrowPeak conservative idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF206HKM, ENCFF411LUB, ENCFF419RSJ, ENCFF820LPI 85250 ENCODE Processing Pipeline 4b847859787531dde3d7c1d26933d608 https://www.encodeproject.org/files/ENCFF552LKV/@@download/ENCFF552LKV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF276XTC bigBed narrowPeak optimal idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF720FJY 272084 ENCODE Processing Pipeline caa568ff350456bb76acb80de8f03062 https://www.encodeproject.org/files/ENCFF276XTC/@@download/ENCFF276XTC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF907ZPD bigWig signal p-value ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF004VBD, ENCFF137WND 936882977 ENCODE Processing Pipeline 0fb25838cd027cb124b737ee8a538e02 https://www.encodeproject.org/files/ENCFF907ZPD/@@download/ENCFF907ZPD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF430YKE bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF004VBD, ENCFF180VYU 5900331 ENCODE Processing Pipeline 38b2cefa01a1fb8d6ce8bf47823a3bd7 https://www.encodeproject.org/files/ENCFF430YKE/@@download/ENCFF430YKE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF345NWE bigBed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF430YKE 11210524 ENCODE Processing Pipeline b84e40f27b67e322e95a4f3fadf4beca https://www.encodeproject.org/files/ENCFF345NWE/@@download/ENCFF345NWE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF999NMM bigWig fold change over control ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF004VBD, ENCFF137WND 898397371 ENCODE Processing Pipeline 5ea389a011e72ae9a7beefbc403fe7ad https://www.encodeproject.org/files/ENCFF999NMM/@@download/ENCFF999NMM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF021CLN bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF004VBD, ENCFF137WND 5666894 ENCODE Processing Pipeline 27517a3099699e324514f9bce53e8422 https://www.encodeproject.org/files/ENCFF021CLN/@@download/ENCFF021CLN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF428OGJ bigBed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF311BXD 11030693 ENCODE Processing Pipeline fff03a29a12c7a5810101bf116850f36 https://www.encodeproject.org/files/ENCFF428OGJ/@@download/ENCFF428OGJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF311BXD bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF004VBD, ENCFF137WND, ENCFF180VYU 6647245 ENCODE Processing Pipeline 395339ff0cb584e4cd350ac595f928b6 https://www.encodeproject.org/files/ENCFF311BXD/@@download/ENCFF311BXD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF779TNZ bigBed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF021CLN 11337702 ENCODE Processing Pipeline 9eaa4133e40378ac8eef9ccd7d88a89a https://www.encodeproject.org/files/ENCFF779TNZ/@@download/ENCFF779TNZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF597ARH bigBed narrowPeak conservative idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF876JRX 219808 ENCODE Processing Pipeline 57de1d58153f69c2b9f83d17637b2f61 https://www.encodeproject.org/files/ENCFF597ARH/@@download/ENCFF597ARH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF330LGL bigBed narrowPeak optimal idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF421VCV 270744 ENCODE Processing Pipeline f00c57171641d4b14281ba7eaf1d6f1d https://www.encodeproject.org/files/ENCFF330LGL/@@download/ENCFF330LGL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF421VCV bed narrowPeak optimal idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF021CLN, ENCFF311BXD, ENCFF430YKE 119381 ENCODE Processing Pipeline 8e82d2a59d192105c2a8862db60b61c7 https://www.encodeproject.org/files/ENCFF421VCV/@@download/ENCFF421VCV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF876JRX bed narrowPeak conservative idr thresholded peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF021CLN, ENCFF311BXD, ENCFF430YKE 85480 ENCODE Processing Pipeline 3cca22439d969eec1c21485e3815e2e7 https://www.encodeproject.org/files/ENCFF876JRX/@@download/ENCFF876JRX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF234UHU fastq reads ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF775BKO 1599681713 Richard Myers, HAIB 4d58db1a738d40ea22fc5ba743164c5c https://www.encodeproject.org/files/ENCFF234UHU/@@download/ENCFF234UHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF155YWF/ released antibody characterized with exemption experiment not submitted to GEO ENCFF775BKO fastq reads ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF234UHU 1630489208 Richard Myers, HAIB f7ad4921ecf507727efe65d5f0098d4a https://www.encodeproject.org/files/ENCFF775BKO/@@download/ENCFF775BKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF227FJX/ released antibody characterized with exemption experiment not submitted to GEO ENCFF982QPR bam unfiltered alignments ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF234UHU, ENCFF775BKO, ENCFF807MUK 3654834510 ENCODE Processing Pipeline 185d35cf7662c96908ace2cd6d659252 https://www.encodeproject.org/files/ENCFF982QPR/@@download/ENCFF982QPR.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF137FXR bam unfiltered alignments ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF234UHU, ENCFF643CGH, ENCFF775BKO 3662113023 ENCODE Processing Pipeline 8f647e5310a3a392ab6a6207ca66b721 https://www.encodeproject.org/files/ENCFF137FXR/@@download/ENCFF137FXR.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF519CKE bam alignments ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF234UHU, ENCFF643CGH, ENCFF775BKO 2505125822 ENCODE Processing Pipeline 5588efbf3d55b258634d98eb3c0b4898 https://www.encodeproject.org/files/ENCFF519CKE/@@download/ENCFF519CKE.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF075WIK bam alignments ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF234UHU, ENCFF775BKO, ENCFF807MUK 2505185642 ENCODE Processing Pipeline dacbc4989dd8856e4e2a8765bbffa424 https://www.encodeproject.org/files/ENCFF075WIK/@@download/ENCFF075WIK.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF961JZX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF438LQP 1973914 ENCODE Processing Pipeline e04505f93a1a9b3c899b6722cc5c0c42 https://www.encodeproject.org/files/ENCFF961JZX/@@download/ENCFF961JZX.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF438LQP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF003CMQ, ENCFF419RSJ 1070350 ENCODE Processing Pipeline 29e855020bd96f2f11a167be3d88d960 https://www.encodeproject.org/files/ENCFF438LQP/@@download/ENCFF438LQP.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF003CMQ bed narrowPeak peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF369ZJF, ENCFF519CKE 6844858 ENCODE Processing Pipeline 81272b5a6ee1723f423048a71a13f2ec https://www.encodeproject.org/files/ENCFF003CMQ/@@download/ENCFF003CMQ.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF568CZP bigWig fold change over control ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF369ZJF, ENCFF519CKE 709179063 ENCODE Processing Pipeline daefa661e4f677732b62a4e7841cea6e https://www.encodeproject.org/files/ENCFF568CZP/@@download/ENCFF568CZP.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF689GZX bigWig signal p-value ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF369ZJF, ENCFF519CKE 859250422 ENCODE Processing Pipeline ccd2adfb4a07727354de5525c7021fe8 https://www.encodeproject.org/files/ENCFF689GZX/@@download/ENCFF689GZX.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF452IHE bigBed narrowPeak peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF003CMQ 13277035 ENCODE Processing Pipeline 071ae174a43a372a78ebf7d176182907 https://www.encodeproject.org/files/ENCFF452IHE/@@download/ENCFF452IHE.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF882RNS bigBed narrowPeak peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF308TCJ 13323796 ENCODE Processing Pipeline 57c794b609ff98efae386d7b7d20422a https://www.encodeproject.org/files/ENCFF882RNS/@@download/ENCFF882RNS.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF571OTQ bigWig signal p-value ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF075WIK, ENCFF218RTJ 931167708 ENCODE Processing Pipeline 4b4e9fcbc847f9c356a90ad1e402600b https://www.encodeproject.org/files/ENCFF571OTQ/@@download/ENCFF571OTQ.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF642XTK bigWig fold change over control ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF075WIK, ENCFF218RTJ 708858451 ENCODE Processing Pipeline 91e22ea0548768b5233b6670e7c75eab https://www.encodeproject.org/files/ENCFF642XTK/@@download/ENCFF642XTK.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF308TCJ bed narrowPeak peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF075WIK, ENCFF218RTJ 6890739 ENCODE Processing Pipeline 55baeeb2b2d6dc0454d14a11ec243f6b https://www.encodeproject.org/files/ENCFF308TCJ/@@download/ENCFF308TCJ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF813WZT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF717PMK 1995250 ENCODE Processing Pipeline 51c2f1f7cf9ee5c8609466ce9c5722ae https://www.encodeproject.org/files/ENCFF813WZT/@@download/ENCFF813WZT.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF717PMK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF308TCJ 1084233 ENCODE Processing Pipeline c2d29faa050048ec9a3137568efe31a4 https://www.encodeproject.org/files/ENCFF717PMK/@@download/ENCFF717PMK.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF681LII bam unfiltered alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 100 ENCFF047XMV, ENCFF423KKF, ENCFF807MUK 5901000050 ENCODE Processing Pipeline d1bd745d0233f54ae8c57b2a70887e1b https://www.encodeproject.org/files/ENCFF681LII/@@download/ENCFF681LII.bam hg19 released ENCFF407XWO bam unfiltered alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 100 ENCFF036YYM, ENCFF807MUK, ENCFF949LLJ 5585050316 ENCODE Processing Pipeline f8792d4537312d6664b40f43232cd13a https://www.encodeproject.org/files/ENCFF407XWO/@@download/ENCFF407XWO.bam hg19 released ENCFF423KKF fastq reads ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF047XMV 2694373787 Michael Snyder, Stanford 574af51d4def37ad5ef29eb02fb9d811 SRA:SRR5112103 https://www.encodeproject.org/files/ENCFF423KKF/@@download/ENCFF423KKF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF036YYM fastq reads ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF949LLJ 2591112421 Michael Snyder, Stanford ce054a288e00de0b9072a52dd9ca1c02 SRA:SRR5112104 https://www.encodeproject.org/files/ENCFF036YYM/@@download/ENCFF036YYM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF047XMV fastq reads ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF423KKF 2763437605 Michael Snyder, Stanford b62b502fae03e94d54715c5148357b39 SRA:SRR5112103 https://www.encodeproject.org/files/ENCFF047XMV/@@download/ENCFF047XMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF949LLJ fastq reads ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF036YYM 2523476452 Michael Snyder, Stanford e843f7530ad0eb416c5032fbe57929f3 SRA:SRR5112104 https://www.encodeproject.org/files/ENCFF949LLJ/@@download/ENCFF949LLJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF367HYB bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 100 ENCFF036YYM, ENCFF807MUK, ENCFF949LLJ 4594559481 ENCODE Processing Pipeline ad7a06d383f969645326098c4c79bec4 https://www.encodeproject.org/files/ENCFF367HYB/@@download/ENCFF367HYB.bam hg19 released ENCFF367UIT bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 100 ENCFF047XMV, ENCFF423KKF, ENCFF807MUK 4882298919 ENCODE Processing Pipeline 8e9d2f76184f85e16e3c93620c75c90d https://www.encodeproject.org/files/ENCFF367UIT/@@download/ENCFF367UIT.bam hg19 released ENCFF158EOX bigWig signal p-value ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF367HYB, ENCFF581ZJL 1055474614 ENCODE Processing Pipeline acab4f52adb03c586a730110cdb0b49e https://www.encodeproject.org/files/ENCFF158EOX/@@download/ENCFF158EOX.bigWig hg19 released ENCFF393KYR bigWig signal p-value ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF367UIT 1139064768 ENCODE Processing Pipeline af1b95c349a100d2e368df3dca42a19e https://www.encodeproject.org/files/ENCFF393KYR/@@download/ENCFF393KYR.bigWig hg19 released ENCFF962OWV bigWig signal p-value ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF367HYB, ENCFF367UIT, ENCFF581ZJL 1873256658 ENCODE Processing Pipeline 73342716dba379cfb45ba6ffd51a76e7 https://www.encodeproject.org/files/ENCFF962OWV/@@download/ENCFF962OWV.bigWig hg19 released ENCFF240NIX bigWig fold change over control ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF367HYB, ENCFF581ZJL 1221334911 ENCODE Processing Pipeline 8e008876b38e96c7a944acd833e408ae https://www.encodeproject.org/files/ENCFF240NIX/@@download/ENCFF240NIX.bigWig hg19 released ENCFF048RYA bigWig fold change over control ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF367UIT 1157252182 ENCODE Processing Pipeline ebf1d21aca72e65bb5c07467d1a723a6 https://www.encodeproject.org/files/ENCFF048RYA/@@download/ENCFF048RYA.bigWig hg19 released ENCFF243LGY bigWig fold change over control ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF367HYB, ENCFF367UIT, ENCFF581ZJL 2141995702 ENCODE Processing Pipeline bee0e07ade7f24dce7c954f47e94f67e https://www.encodeproject.org/files/ENCFF243LGY/@@download/ENCFF243LGY.bigWig hg19 released ENCFF763UFC bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF367UIT 7147888 ENCODE Processing Pipeline 50903e83e12dbeb447c95ecffa403841 https://www.encodeproject.org/files/ENCFF763UFC/@@download/ENCFF763UFC.bed.gz hg19 released ENCFF279NYK bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF367HYB, ENCFF581ZJL 7069487 ENCODE Processing Pipeline b61f8701b5f98bac19965b927a3da8d4 https://www.encodeproject.org/files/ENCFF279NYK/@@download/ENCFF279NYK.bed.gz hg19 released ENCFF636VOC bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF367HYB, ENCFF367UIT, ENCFF581ZJL 7198879 ENCODE Processing Pipeline fe4dadc48f6e8f5c198831a8a6a8eb47 https://www.encodeproject.org/files/ENCFF636VOC/@@download/ENCFF636VOC.bed.gz hg19 released ENCFF436WTU bigBed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF279NYK 12882638 ENCODE Processing Pipeline b0037abf890aac9ef6735f777a00d2f5 https://www.encodeproject.org/files/ENCFF436WTU/@@download/ENCFF436WTU.bigBed hg19 released ENCFF078LQJ bigBed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF763UFC 12963517 ENCODE Processing Pipeline cacd4f5f3cb460d0875290b897f410db https://www.encodeproject.org/files/ENCFF078LQJ/@@download/ENCFF078LQJ.bigBed hg19 released ENCFF484GKF bigBed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF636VOC 12852415 ENCODE Processing Pipeline e8c97131522daada7755367a1e4d2901 https://www.encodeproject.org/files/ENCFF484GKF/@@download/ENCFF484GKF.bigBed hg19 released ENCFF467YYR bed narrowPeak conservative idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF279NYK, ENCFF636VOC, ENCFF763UFC 593124 ENCODE Processing Pipeline c17a6f033f7ecb8e5b252c35b091d271 https://www.encodeproject.org/files/ENCFF467YYR/@@download/ENCFF467YYR.bed.gz hg19 released ENCFF057ZUY bed narrowPeak optimal idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF279NYK, ENCFF636VOC, ENCFF763UFC 794464 ENCODE Processing Pipeline eb1f9eb14541c9c86ab5f62539332276 https://www.encodeproject.org/files/ENCFF057ZUY/@@download/ENCFF057ZUY.bed.gz hg19 released ENCFF954LVJ bigBed narrowPeak conservative idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF467YYR 1111790 ENCODE Processing Pipeline ad4b34c14cfddd6b438763d5171ed049 https://www.encodeproject.org/files/ENCFF954LVJ/@@download/ENCFF954LVJ.bigBed hg19 released ENCFF607GZL bigBed narrowPeak optimal idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF057ZUY 1399751 ENCODE Processing Pipeline d98f8818a963b78fa5d7d848b2254b51 https://www.encodeproject.org/files/ENCFF607GZL/@@download/ENCFF607GZL.bigBed hg19 released ENCFF853ROL bam unfiltered alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 100 ENCFF036YYM, ENCFF643CGH, ENCFF949LLJ 5589339899 ENCODE Processing Pipeline c6732fa60e42b9b211b25a93f992587b https://www.encodeproject.org/files/ENCFF853ROL/@@download/ENCFF853ROL.bam GRCh38 released ENCFF996EBH bam unfiltered alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 100 ENCFF047XMV, ENCFF423KKF, ENCFF643CGH 5904868258 ENCODE Processing Pipeline 820518815a47f10c494b0696b0f6a972 https://www.encodeproject.org/files/ENCFF996EBH/@@download/ENCFF996EBH.bam GRCh38 released ENCFF207LND bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 100 ENCFF036YYM, ENCFF643CGH, ENCFF949LLJ 4597515174 ENCODE Processing Pipeline 80a0c86c3e1cf810dc17a9335f87dc53 https://www.encodeproject.org/files/ENCFF207LND/@@download/ENCFF207LND.bam GRCh38 released ENCFF541XEW bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 100 ENCFF047XMV, ENCFF423KKF, ENCFF643CGH 4885837359 ENCODE Processing Pipeline c87ab64d67941ce976f74ef436a7f823 https://www.encodeproject.org/files/ENCFF541XEW/@@download/ENCFF541XEW.bam GRCh38 released ENCFF679HUQ bigWig signal p-value ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF207LND, ENCFF910IKB 1269104755 ENCODE Processing Pipeline 2a8aba6ca9effba808e3a7da592e7e83 https://www.encodeproject.org/files/ENCFF679HUQ/@@download/ENCFF679HUQ.bigWig GRCh38 released ENCFF611STV bigWig signal p-value ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF227IZS, ENCFF541XEW 1020099226 ENCODE Processing Pipeline c0362bfa479ebc69d2de3a019ff05e9a https://www.encodeproject.org/files/ENCFF611STV/@@download/ENCFF611STV.bigWig GRCh38 released ENCFF809QYH bigWig signal p-value ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207LND, ENCFF227IZS, ENCFF541XEW, ENCFF910IKB 1814839030 ENCODE Processing Pipeline 79aaedd7d2d3ffb8acade1e88e5421c9 https://www.encodeproject.org/files/ENCFF809QYH/@@download/ENCFF809QYH.bigWig GRCh38 released ENCFF371GTB bigWig fold change over control ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF207LND, ENCFF910IKB 1217755467 ENCODE Processing Pipeline 2d2bd52281418914f303ffb0ef26308a https://www.encodeproject.org/files/ENCFF371GTB/@@download/ENCFF371GTB.bigWig GRCh38 released ENCFF740SZG bigWig fold change over control ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF227IZS, ENCFF541XEW 1210537632 ENCODE Processing Pipeline f904382087a7d3b7ccd69508e8111c1f https://www.encodeproject.org/files/ENCFF740SZG/@@download/ENCFF740SZG.bigWig GRCh38 released ENCFF464MCC bigWig fold change over control ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207LND, ENCFF227IZS, ENCFF541XEW, ENCFF910IKB 2155504900 ENCODE Processing Pipeline 98539a289b22c36b1e9a1f714d7a4f79 https://www.encodeproject.org/files/ENCFF464MCC/@@download/ENCFF464MCC.bigWig GRCh38 released ENCFF765TQQ bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF207LND, ENCFF910IKB 7013733 ENCODE Processing Pipeline 708f056acdeb1efaaa27d0aa6c8f9642 https://www.encodeproject.org/files/ENCFF765TQQ/@@download/ENCFF765TQQ.bed.gz GRCh38 released ENCFF347TKX bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF227IZS, ENCFF541XEW 7061712 ENCODE Processing Pipeline 820c5a667db657dc69c5388522ed5ad2 https://www.encodeproject.org/files/ENCFF347TKX/@@download/ENCFF347TKX.bed.gz GRCh38 released ENCFF536VKO bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207LND, ENCFF227IZS, ENCFF541XEW, ENCFF910IKB 7155199 ENCODE Processing Pipeline 97145b67e6b8b9ac8f4e7b61938bfe69 https://www.encodeproject.org/files/ENCFF536VKO/@@download/ENCFF536VKO.bed.gz GRCh38 released ENCFF502XAO bigBed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF765TQQ 12882132 ENCODE Processing Pipeline 6bd70c8c9c58e0538a56dfe1be5ff582 https://www.encodeproject.org/files/ENCFF502XAO/@@download/ENCFF502XAO.bigBed GRCh38 released ENCFF212IQF bigBed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF347TKX 12921627 ENCODE Processing Pipeline e3cab51c0403ecebbf746f8f87ab6198 https://www.encodeproject.org/files/ENCFF212IQF/@@download/ENCFF212IQF.bigBed GRCh38 released ENCFF845PGW bigBed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF536VKO 12815627 ENCODE Processing Pipeline 40ba772598cb2b1675b4bb4b1505546d https://www.encodeproject.org/files/ENCFF845PGW/@@download/ENCFF845PGW.bigBed GRCh38 released ENCFF538UZE bed narrowPeak conservative idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF347TKX, ENCFF419RSJ, ENCFF536VKO, ENCFF765TQQ 579549 ENCODE Processing Pipeline 255d2c2f784199d077fe6369ae3b1551 https://www.encodeproject.org/files/ENCFF538UZE/@@download/ENCFF538UZE.bed.gz GRCh38 released ENCFF408HXX bigBed narrowPeak conservative idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF538UZE 1095753 ENCODE Processing Pipeline b89708c3cd52bff9156e336fa0304000 https://www.encodeproject.org/files/ENCFF408HXX/@@download/ENCFF408HXX.bigBed GRCh38 released ENCFF186JKG bed narrowPeak optimal idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF347TKX, ENCFF419RSJ, ENCFF536VKO, ENCFF765TQQ 787885 ENCODE Processing Pipeline 5fc56d41933b612a84f520ac8901c382 https://www.encodeproject.org/files/ENCFF186JKG/@@download/ENCFF186JKG.bed.gz GRCh38 released ENCFF975KNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF186JKG 1393304 ENCODE Processing Pipeline e9e3af326de5c16039d1543bbe767100 https://www.encodeproject.org/files/ENCFF975KNJ/@@download/ENCFF975KNJ.bigBed GRCh38 released ENCFF170NRX fastq reads ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF697UGT 4725223162 Michael Snyder, Stanford 84b20af22c918e0f10f1b0517c3dbd6b SRA:SRR6212966 https://www.encodeproject.org/files/ENCFF170NRX/@@download/ENCFF170NRX.fastq.gz Illumina HiSeq 2000 /files/ENCFF868MWO/ released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF697UGT fastq reads ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF170NRX 4804814913 Michael Snyder, Stanford 7061e7c1c0463333aad20870661639df SRA:SRR6212966 https://www.encodeproject.org/files/ENCFF697UGT/@@download/ENCFF697UGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF745ZXO/ released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF328CPO fastq reads ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 1 100 paired-ended 1 ENCFF761YLA 3578469060 Michael Snyder, Stanford 64b5541b1369ef093fec49b4b122d299 SRA:SRR6212965 https://www.encodeproject.org/files/ENCFF328CPO/@@download/ENCFF328CPO.fastq.gz Illumina HiSeq 2000 /files/ENCFF926HWQ/ released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF761YLA fastq reads ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 1 100 paired-ended 2 ENCFF328CPO 3654363886 Michael Snyder, Stanford 2e502e4f9c6778d76a538621a27b8275 SRA:SRR6212965 https://www.encodeproject.org/files/ENCFF761YLA/@@download/ENCFF761YLA.fastq.gz Illumina HiSeq 2000 /files/ENCFF776RZI/ released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF690XDZ bam unfiltered alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 100 ENCFF328CPO, ENCFF643CGH, ENCFF761YLA 7556450650 ENCODE Processing Pipeline b85f8ae6e4aa23b1ac8f8ba4e0c923f8 https://www.encodeproject.org/files/ENCFF690XDZ/@@download/ENCFF690XDZ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF724INS bam unfiltered alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 100 ENCFF170NRX, ENCFF643CGH, ENCFF697UGT 9729357356 ENCODE Processing Pipeline c2e12b86ca26c060e4d851d2ee63f513 https://www.encodeproject.org/files/ENCFF724INS/@@download/ENCFF724INS.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF714QBW bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 100 ENCFF328CPO, ENCFF643CGH, ENCFF761YLA 6052027234 ENCODE Processing Pipeline fe957094376d6091d026897a73c1b41d https://www.encodeproject.org/files/ENCFF714QBW/@@download/ENCFF714QBW.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF125NPU bam unfiltered alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 100 ENCFF328CPO, ENCFF761YLA, ENCFF807MUK 7534439573 ENCODE Processing Pipeline 3b59704f052639367e64589867b22624 https://www.encodeproject.org/files/ENCFF125NPU/@@download/ENCFF125NPU.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF217FFI bam unfiltered alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 100 ENCFF170NRX, ENCFF697UGT, ENCFF807MUK 9702859135 ENCODE Processing Pipeline 25871fe5a88847a47f48c0697fbbe958 https://www.encodeproject.org/files/ENCFF217FFI/@@download/ENCFF217FFI.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF342JBG bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 100 ENCFF170NRX, ENCFF643CGH, ENCFF697UGT 7954118102 ENCODE Processing Pipeline b431200c7155b163c2a5810ffbe3c6c0 https://www.encodeproject.org/files/ENCFF342JBG/@@download/ENCFF342JBG.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF312LTL bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 100 ENCFF328CPO, ENCFF761YLA, ENCFF807MUK 6044549175 ENCODE Processing Pipeline dc117d863ec7dfed477a2904aab77931 https://www.encodeproject.org/files/ENCFF312LTL/@@download/ENCFF312LTL.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF969MDP bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 100 ENCFF170NRX, ENCFF697UGT, ENCFF807MUK 7943270603 ENCODE Processing Pipeline 76960cb610de05d43609736f402e4d4a https://www.encodeproject.org/files/ENCFF969MDP/@@download/ENCFF969MDP.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF972EVK bigWig signal p-value ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF761NWZ, ENCFF969MDP 2058734561 ENCODE Processing Pipeline 09ff286f1ff75d3637df84dc71e26fc6 https://www.encodeproject.org/files/ENCFF972EVK/@@download/ENCFF972EVK.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF133EDX bigWig fold change over control ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF761NWZ, ENCFF969MDP 2121241452 ENCODE Processing Pipeline 21ed09f0adfeb864c8fd0d50a52e9340 https://www.encodeproject.org/files/ENCFF133EDX/@@download/ENCFF133EDX.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF420XMW bigWig signal p-value ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ 1830225421 ENCODE Processing Pipeline 306163b7d2e7c9ff6677983e5d411385 https://www.encodeproject.org/files/ENCFF420XMW/@@download/ENCFF420XMW.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF095BKL bigWig signal p-value ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ, ENCFF969MDP 2306358011 ENCODE Processing Pipeline 5d43bda057f4c500dbdc8e176f389a50 https://www.encodeproject.org/files/ENCFF095BKL/@@download/ENCFF095BKL.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF211DVH bigWig fold change over control ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ 1929656587 ENCODE Processing Pipeline 202e1e900b38770bf2b08965b92d3e19 https://www.encodeproject.org/files/ENCFF211DVH/@@download/ENCFF211DVH.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF598YBZ bigWig fold change over control ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ, ENCFF969MDP 2573997607 ENCODE Processing Pipeline 7ccd74c35cfbfa4dbf80a19a4742d664 https://www.encodeproject.org/files/ENCFF598YBZ/@@download/ENCFF598YBZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF881NRM bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF761NWZ, ENCFF969MDP 7146794 ENCODE Processing Pipeline 0a9ec32727674760156f92ccc26d8b0e https://www.encodeproject.org/files/ENCFF881NRM/@@download/ENCFF881NRM.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF865UXS bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ 7108274 ENCODE Processing Pipeline 20668413d6068304e16ec0c1b2f14427 https://www.encodeproject.org/files/ENCFF865UXS/@@download/ENCFF865UXS.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF413CDN bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ, ENCFF969MDP 7319155 ENCODE Processing Pipeline 0ffdf80c178207d066e746dffc2995dd https://www.encodeproject.org/files/ENCFF413CDN/@@download/ENCFF413CDN.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF454HJG bigBed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF881NRM 13233683 ENCODE Processing Pipeline de5cd8d9a18ea5b9a481eff18b6acc54 https://www.encodeproject.org/files/ENCFF454HJG/@@download/ENCFF454HJG.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF396FZX bigBed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF865UXS 13287868 ENCODE Processing Pipeline 2560e91141323f184047d8a3e2d7b23f https://www.encodeproject.org/files/ENCFF396FZX/@@download/ENCFF396FZX.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF708XIW bigBed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF413CDN 13211581 ENCODE Processing Pipeline 93b84f1e14873faf37da12d60be16a17 https://www.encodeproject.org/files/ENCFF708XIW/@@download/ENCFF708XIW.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF173JWB bed narrowPeak conservative idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF413CDN, ENCFF865UXS, ENCFF881NRM 3569 ENCODE Processing Pipeline 212aaa2f29e9b61184c740c531156f72 https://www.encodeproject.org/files/ENCFF173JWB/@@download/ENCFF173JWB.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF183YFH bigBed narrowPeak conservative idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF173JWB 20962 ENCODE Processing Pipeline 62490498e277d4a6e87b10829f848e62 https://www.encodeproject.org/files/ENCFF183YFH/@@download/ENCFF183YFH.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF445OFX bed narrowPeak optimal idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF413CDN, ENCFF865UXS, ENCFF881NRM 7060 ENCODE Processing Pipeline ab0ec33cf8865cad353c7eac9c884812 https://www.encodeproject.org/files/ENCFF445OFX/@@download/ENCFF445OFX.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF797GMK bigBed narrowPeak optimal idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF445OFX 63262 ENCODE Processing Pipeline 8e235945090e451d218f7568ee5911c3 https://www.encodeproject.org/files/ENCFF797GMK/@@download/ENCFF797GMK.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF039ADA bigWig signal p-value ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF342JBG, ENCFF483ELD, ENCFF714QBW, ENCFF769UET 2100901185 ENCODE Processing Pipeline 742d24fc9f606f3e113d12e30328a952 https://www.encodeproject.org/files/ENCFF039ADA/@@download/ENCFF039ADA.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF201JLZ bigWig fold change over control ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF483ELD, ENCFF714QBW, ENCFF769UET 1947150710 ENCODE Processing Pipeline 6b192683e9edc070b442dad614ff4b7a https://www.encodeproject.org/files/ENCFF201JLZ/@@download/ENCFF201JLZ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF329DYF bigWig signal p-value ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF342JBG, ENCFF483ELD, ENCFF769UET 1955039991 ENCODE Processing Pipeline c0d3e1c28a262a93706cb5cfd75a9049 https://www.encodeproject.org/files/ENCFF329DYF/@@download/ENCFF329DYF.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF295ZFL bigWig fold change over control ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF342JBG, ENCFF483ELD, ENCFF769UET 2120217011 ENCODE Processing Pipeline a2889ddbf0db3c9a8bd3931f8da1e8de https://www.encodeproject.org/files/ENCFF295ZFL/@@download/ENCFF295ZFL.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF012GOT bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF342JBG, ENCFF483ELD, ENCFF769UET 7156579 ENCODE Processing Pipeline fd5ef642a7778934b0d9823905262370 https://www.encodeproject.org/files/ENCFF012GOT/@@download/ENCFF012GOT.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF288INQ bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF483ELD, ENCFF714QBW, ENCFF769UET 7119578 ENCODE Processing Pipeline 77d719f1eccfc3273ad1ec04f0059cd9 https://www.encodeproject.org/files/ENCFF288INQ/@@download/ENCFF288INQ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF695MYF bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF342JBG, ENCFF483ELD, ENCFF714QBW, ENCFF769UET 7327647 ENCODE Processing Pipeline 1fb9bda2ba18e28252175c2fbc97b3aa https://www.encodeproject.org/files/ENCFF695MYF/@@download/ENCFF695MYF.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF550TZM bigBed narrowPeak optimal idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF447UZC 93672 ENCODE Processing Pipeline d6172932ab49a32f29bdb7f6c70991a8 https://www.encodeproject.org/files/ENCFF550TZM/@@download/ENCFF550TZM.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF576MFE bigBed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF288INQ 13307981 ENCODE Processing Pipeline 3e281febd2720c942a13ec96c1d240d1 https://www.encodeproject.org/files/ENCFF576MFE/@@download/ENCFF576MFE.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF674YJV bigBed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF695MYF 13219961 ENCODE Processing Pipeline 7d9d74f492226deb4a89b4999888854c https://www.encodeproject.org/files/ENCFF674YJV/@@download/ENCFF674YJV.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF056PDQ bed narrowPeak conservative idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF012GOT, ENCFF288INQ, ENCFF419RSJ, ENCFF695MYF 3961 ENCODE Processing Pipeline a79b7a28990beb0b82f7c923ecb2fd30 https://www.encodeproject.org/files/ENCFF056PDQ/@@download/ENCFF056PDQ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF552UMS bigBed narrowPeak conservative idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF056PDQ 22768 ENCODE Processing Pipeline 28e9b4a0311b47ae793ad961c3f053fd https://www.encodeproject.org/files/ENCFF552UMS/@@download/ENCFF552UMS.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF839QLL bigWig fold change over control ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF342JBG, ENCFF483ELD, ENCFF714QBW, ENCFF769UET 2578743557 ENCODE Processing Pipeline 3ded4d88c83afbe88880c0d64398550f https://www.encodeproject.org/files/ENCFF839QLL/@@download/ENCFF839QLL.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF447UZC bed narrowPeak optimal idr thresholded peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF012GOT, ENCFF288INQ, ENCFF419RSJ, ENCFF695MYF 7517 ENCODE Processing Pipeline 4f39c6fcd46ab6d0794e047f87e03de7 https://www.encodeproject.org/files/ENCFF447UZC/@@download/ENCFF447UZC.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF739GMH bigWig signal p-value ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF483ELD, ENCFF714QBW, ENCFF769UET 1915052539 ENCODE Processing Pipeline d94a4ce581821febbbf212d5331866db https://www.encodeproject.org/files/ENCFF739GMH/@@download/ENCFF739GMH.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF864WJK bigBed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF012GOT 13255057 ENCODE Processing Pipeline f5c174764d7a001f67f7b95cc4d76545 https://www.encodeproject.org/files/ENCFF864WJK/@@download/ENCFF864WJK.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF594PZU fastq reads ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF195VBJ 2731126057 Michael Snyder, Stanford 34d5b8d0d1c48da5e872de69d8d93a31 SRA:SRR6214055 https://www.encodeproject.org/files/ENCFF594PZU/@@download/ENCFF594PZU.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released ENCFF089AER fastq reads ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF032BZZ 3005518748 Michael Snyder, Stanford 3d2de8d46530aaf040f342710d20d00f SRA:SRR6214054 https://www.encodeproject.org/files/ENCFF089AER/@@download/ENCFF089AER.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released ENCFF032BZZ fastq reads ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF089AER 3465660971 Michael Snyder, Stanford 91e398c2f8ff1d758ecb225c06fb9411 SRA:SRR6214054 https://www.encodeproject.org/files/ENCFF032BZZ/@@download/ENCFF032BZZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released ENCFF195VBJ fastq reads ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF594PZU 3135060951 Michael Snyder, Stanford d7034d73e61a394e82d3e22a647c4aae SRA:SRR6214055 https://www.encodeproject.org/files/ENCFF195VBJ/@@download/ENCFF195VBJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released ENCFF491VKJ bam unfiltered alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 100 ENCFF195VBJ, ENCFF594PZU, ENCFF807MUK 5751312046 ENCODE Processing Pipeline 0c006096ec44df834d0f39010289964e https://www.encodeproject.org/files/ENCFF491VKJ/@@download/ENCFF491VKJ.bam hg19 released ENCFF968LYC bam unfiltered alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 100 ENCFF032BZZ, ENCFF089AER, ENCFF643CGH 6215989878 ENCODE Processing Pipeline af51cd1486c66b215c80906876c3a9e8 https://www.encodeproject.org/files/ENCFF968LYC/@@download/ENCFF968LYC.bam GRCh38 released ENCFF697IBN bam unfiltered alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 100 ENCFF032BZZ, ENCFF089AER, ENCFF807MUK 6202192679 ENCODE Processing Pipeline ac103a29894d9297c28d687171279e8c https://www.encodeproject.org/files/ENCFF697IBN/@@download/ENCFF697IBN.bam hg19 released ENCFF189YTO bam unfiltered alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 100 ENCFF195VBJ, ENCFF594PZU, ENCFF643CGH 5765459255 ENCODE Processing Pipeline 57f701c6ce90efdc04e58b29ea9435bb https://www.encodeproject.org/files/ENCFF189YTO/@@download/ENCFF189YTO.bam GRCh38 released ENCFF369YVA bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 100 ENCFF195VBJ, ENCFF594PZU, ENCFF643CGH 4840675299 ENCODE Processing Pipeline 23f195df37760c3add5ebdecdd376b32 https://www.encodeproject.org/files/ENCFF369YVA/@@download/ENCFF369YVA.bam GRCh38 released ENCFF821WQW bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 100 ENCFF195VBJ, ENCFF594PZU, ENCFF807MUK 4831825733 ENCODE Processing Pipeline e9c6eeedee7dc41d6e19ca6f7a6777f3 https://www.encodeproject.org/files/ENCFF821WQW/@@download/ENCFF821WQW.bam hg19 released ENCFF761YGL bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 100 ENCFF032BZZ, ENCFF089AER, ENCFF643CGH 5278209109 ENCODE Processing Pipeline bb7b2dd9d06bbbec97fc557ec5775511 https://www.encodeproject.org/files/ENCFF761YGL/@@download/ENCFF761YGL.bam GRCh38 released ENCFF370OOM bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 100 ENCFF032BZZ, ENCFF089AER, ENCFF807MUK 5270192748 ENCODE Processing Pipeline 0182268d325f4004f4852e9b84360b98 https://www.encodeproject.org/files/ENCFF370OOM/@@download/ENCFF370OOM.bam hg19 released ENCFF555PEJ bigWig signal p-value ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF369YVA, ENCFF475DWJ, ENCFF621RXC 1988783628 ENCODE Processing Pipeline 8a0eabbcc21ca5ab9467d34f9296b592 https://www.encodeproject.org/files/ENCFF555PEJ/@@download/ENCFF555PEJ.bigWig GRCh38 released ENCFF909ZPK bigWig fold change over control ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF369YVA, ENCFF475DWJ, ENCFF621RXC 2109780309 ENCODE Processing Pipeline 135cd68acdbf95804c207b3f4ec24c9b https://www.encodeproject.org/files/ENCFF909ZPK/@@download/ENCFF909ZPK.bigWig GRCh38 released ENCFF858MRH bigWig signal p-value ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF761YGL 2024157438 ENCODE Processing Pipeline a64d553fc84457f6988e434f0dc83d36 https://www.encodeproject.org/files/ENCFF858MRH/@@download/ENCFF858MRH.bigWig GRCh38 released ENCFF952JIZ bigWig signal p-value ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF369YVA, ENCFF475DWJ, ENCFF621RXC, ENCFF761YGL 2536857228 ENCODE Processing Pipeline fd81355217d2d789446fd852a0d18596 https://www.encodeproject.org/files/ENCFF952JIZ/@@download/ENCFF952JIZ.bigWig GRCh38 released ENCFF924FPA bigWig fold change over control ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF761YGL 2223872615 ENCODE Processing Pipeline ca84f3d58a29e554e84d67b0a1eea324 https://www.encodeproject.org/files/ENCFF924FPA/@@download/ENCFF924FPA.bigWig GRCh38 released ENCFF425KNU bigBed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF798JBY 11285177 ENCODE Processing Pipeline 54bb8a64f42d64c01d06965973341265 https://www.encodeproject.org/files/ENCFF425KNU/@@download/ENCFF425KNU.bigBed GRCh38 released ENCFF578FXO bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF369YVA, ENCFF475DWJ, ENCFF621RXC, ENCFF761YGL 7243096 ENCODE Processing Pipeline 9b373f38cb94ede1b68172879c9f0167 https://www.encodeproject.org/files/ENCFF578FXO/@@download/ENCFF578FXO.bed.gz GRCh38 released ENCFF438OJL bigWig fold change over control ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF821WQW, ENCFF843IXX 2129405341 ENCODE Processing Pipeline f66f0b2005a85572193628a6f814b50d https://www.encodeproject.org/files/ENCFF438OJL/@@download/ENCFF438OJL.bigWig hg19 released ENCFF134OKF bigBed narrowPeak conservative idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF651YUW 382327 ENCODE Processing Pipeline 66f7fd79b3d7a1351a23b05a3440f0d4 https://www.encodeproject.org/files/ENCFF134OKF/@@download/ENCFF134OKF.bigBed GRCh38 released ENCFF482JSR bed narrowPeak optimal idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF578FXO, ENCFF798JBY, ENCFF988JKI 221800 ENCODE Processing Pipeline e9e5f0d9a3d3ffc6663c293967ce18a4 https://www.encodeproject.org/files/ENCFF482JSR/@@download/ENCFF482JSR.bed.gz GRCh38 released ENCFF048RPN bigWig signal p-value ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF172XZA, ENCFF370OOM, ENCFF821WQW, ENCFF843IXX 2536844880 ENCODE Processing Pipeline 3d5d65d66bf08383c1fe3c32cf0dc370 https://www.encodeproject.org/files/ENCFF048RPN/@@download/ENCFF048RPN.bigWig hg19 released ENCFF368MWT bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF172XZA, ENCFF370OOM, ENCFF821WQW, ENCFF843IXX 7236058 ENCODE Processing Pipeline 68cae60b792274fc6d5f39146687d7af https://www.encodeproject.org/files/ENCFF368MWT/@@download/ENCFF368MWT.bed.gz hg19 released ENCFF444NWO bigBed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF641DSK 11279861 ENCODE Processing Pipeline e8d0ab0548c4732d6bef34cfc78dade7 https://www.encodeproject.org/files/ENCFF444NWO/@@download/ENCFF444NWO.bigBed hg19 released ENCFF798JBY bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF369YVA, ENCFF475DWJ, ENCFF621RXC 7012157 ENCODE Processing Pipeline df7db91e4612042bcd1b7cb57069f527 https://www.encodeproject.org/files/ENCFF798JBY/@@download/ENCFF798JBY.bed.gz GRCh38 released ENCFF940ZEN bigBed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF578FXO 13369683 ENCODE Processing Pipeline a70556d930b26e7df169da811bb15b61 https://www.encodeproject.org/files/ENCFF940ZEN/@@download/ENCFF940ZEN.bigBed GRCh38 released ENCFF966YHV bigWig fold change over control ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF370OOM, ENCFF843IXX 2199160059 ENCODE Processing Pipeline fbb55c247e44e733707f6a86cf4585d2 https://www.encodeproject.org/files/ENCFF966YHV/@@download/ENCFF966YHV.bigWig hg19 released ENCFF830CCF bigWig fold change over control ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF172XZA, ENCFF370OOM, ENCFF821WQW, ENCFF843IXX 2845930363 ENCODE Processing Pipeline bb6ffa47d50cb74bdea9c9f4c38000bd https://www.encodeproject.org/files/ENCFF830CCF/@@download/ENCFF830CCF.bigWig hg19 released ENCFF678VNB bigBed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF988JKI 11397989 ENCODE Processing Pipeline 744aa8c5ca1a4f241bca5b963ca3edbd https://www.encodeproject.org/files/ENCFF678VNB/@@download/ENCFF678VNB.bigBed GRCh38 released ENCFF651YUW bed narrowPeak conservative idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF578FXO, ENCFF798JBY, ENCFF988JKI 183624 ENCODE Processing Pipeline e6d30aa539ea5b66983871cb26bb8aa0 https://www.encodeproject.org/files/ENCFF651YUW/@@download/ENCFF651YUW.bed.gz GRCh38 released ENCFF763GJP bed narrowPeak optimal idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF368MWT, ENCFF617PCO, ENCFF641DSK 217965 ENCODE Processing Pipeline 0416804df0cf36ce6c564ea3183bee52 https://www.encodeproject.org/files/ENCFF763GJP/@@download/ENCFF763GJP.bed.gz hg19 released ENCFF637CPS bigBed narrowPeak optimal idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF763GJP 433793 ENCODE Processing Pipeline bce767562291a0618c6591e2e7df2fec https://www.encodeproject.org/files/ENCFF637CPS/@@download/ENCFF637CPS.bigBed hg19 released ENCFF495DSU bigWig signal p-value ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF821WQW, ENCFF843IXX 2072061465 ENCODE Processing Pipeline a810fba278b21f7f80ef24ed363f0f87 https://www.encodeproject.org/files/ENCFF495DSU/@@download/ENCFF495DSU.bigWig hg19 released ENCFF241GZH bigWig fold change over control ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF369YVA, ENCFF475DWJ, ENCFF621RXC, ENCFF761YGL 2800134581 ENCODE Processing Pipeline e4aa97fac75de884e0d54fb86276de8b https://www.encodeproject.org/files/ENCFF241GZH/@@download/ENCFF241GZH.bigWig GRCh38 released ENCFF988JKI bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF761YGL 6988246 ENCODE Processing Pipeline 3084a75c147b940d075a5b7cf730ace3 https://www.encodeproject.org/files/ENCFF988JKI/@@download/ENCFF988JKI.bed.gz GRCh38 released ENCFF729CHI bigBed narrowPeak optimal idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF482JSR 439985 ENCODE Processing Pipeline 2bdb30d28b3f0e40147a38b3bd835089 https://www.encodeproject.org/files/ENCFF729CHI/@@download/ENCFF729CHI.bigBed GRCh38 released ENCFF641DSK bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF821WQW, ENCFF843IXX 7016527 ENCODE Processing Pipeline dcff0e1646822b73b232b31bdb15533e https://www.encodeproject.org/files/ENCFF641DSK/@@download/ENCFF641DSK.bed.gz hg19 released ENCFF313NAH bigBed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF368MWT 13355948 ENCODE Processing Pipeline a13df70256fe054d5e64998b4b4a4b4a https://www.encodeproject.org/files/ENCFF313NAH/@@download/ENCFF313NAH.bigBed hg19 released ENCFF107CEH bed narrowPeak conservative idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF368MWT, ENCFF617PCO, ENCFF641DSK 182622 ENCODE Processing Pipeline 275a4676d4b18fa74f9340185f74260d https://www.encodeproject.org/files/ENCFF107CEH/@@download/ENCFF107CEH.bed.gz hg19 released ENCFF716YOQ bigWig signal p-value ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF370OOM, ENCFF843IXX 1911216191 ENCODE Processing Pipeline 0e8af9ad812a92124b61a4ed6ab74266 https://www.encodeproject.org/files/ENCFF716YOQ/@@download/ENCFF716YOQ.bigWig hg19 released ENCFF617PCO bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF370OOM, ENCFF843IXX 6969558 ENCODE Processing Pipeline 168127b18f6de59061bd95ebc54d50f2 https://www.encodeproject.org/files/ENCFF617PCO/@@download/ENCFF617PCO.bed.gz hg19 released ENCFF042MBL bigBed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF617PCO 11368818 ENCODE Processing Pipeline cc7b43224fd17543975875033947d69e https://www.encodeproject.org/files/ENCFF042MBL/@@download/ENCFF042MBL.bigBed hg19 released ENCFF258LQE bigBed narrowPeak conservative idr thresholded peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF107CEH 380543 ENCODE Processing Pipeline a1341d0a07d25c987eab69221028bdc4 https://www.encodeproject.org/files/ENCFF258LQE/@@download/ENCFF258LQE.bigBed hg19 released ENCFF321WHZ fastq reads ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF905FGU 2231815735 Michael Snyder, Stanford 43c277ce39e03425cb8882028ebda39f https://www.encodeproject.org/files/ENCFF321WHZ/@@download/ENCFF321WHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released experiment not submitted to GEO partially characterized antibody ENCFF717UVU fastq reads ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF715YUU 2464420513 Michael Snyder, Stanford dd22bd42de04223479ae1426f918b117 https://www.encodeproject.org/files/ENCFF717UVU/@@download/ENCFF717UVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released experiment not submitted to GEO partially characterized antibody ENCFF905FGU fastq reads ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF321WHZ 2231725971 Michael Snyder, Stanford 5fa154aba2f741082bf5b3a983b8844d https://www.encodeproject.org/files/ENCFF905FGU/@@download/ENCFF905FGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released experiment not submitted to GEO partially characterized antibody ENCFF715YUU fastq reads ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF717UVU 2458887680 Michael Snyder, Stanford c4ca0dd7b1c0cce178b625d840208da5 https://www.encodeproject.org/files/ENCFF715YUU/@@download/ENCFF715YUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released experiment not submitted to GEO partially characterized antibody ENCFF640TVU bam unfiltered alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 100 ENCFF321WHZ, ENCFF643CGH, ENCFF905FGU 4882651530 ENCODE Processing Pipeline d6d7453cd4573e8ce932c1213de93de1 https://www.encodeproject.org/files/ENCFF640TVU/@@download/ENCFF640TVU.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF368PUV bam unfiltered alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 100 ENCFF643CGH, ENCFF715YUU, ENCFF717UVU 5336020342 ENCODE Processing Pipeline 0cdfff29c41177bc2cadc25173fbe99a https://www.encodeproject.org/files/ENCFF368PUV/@@download/ENCFF368PUV.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF161YVC bam unfiltered alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 100 ENCFF321WHZ, ENCFF807MUK, ENCFF905FGU 4878670622 ENCODE Processing Pipeline a35d3d094b64686cd0d2c6d8196e8e77 https://www.encodeproject.org/files/ENCFF161YVC/@@download/ENCFF161YVC.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF607OQO bam unfiltered alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 100 ENCFF715YUU, ENCFF717UVU, ENCFF807MUK 5331647064 ENCODE Processing Pipeline c7b7ba592a0bf09bcfe5f405a6ce4e6a https://www.encodeproject.org/files/ENCFF607OQO/@@download/ENCFF607OQO.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF094TQU bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 100 ENCFF321WHZ, ENCFF807MUK, ENCFF905FGU 4209188851 ENCODE Processing Pipeline 3427373ee1d121e285de2feda53c4574 https://www.encodeproject.org/files/ENCFF094TQU/@@download/ENCFF094TQU.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF702FFH bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 100 ENCFF321WHZ, ENCFF643CGH, ENCFF905FGU 4212057344 ENCODE Processing Pipeline b55d70319ae7b48f1df5cf5f308ab3a2 https://www.encodeproject.org/files/ENCFF702FFH/@@download/ENCFF702FFH.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF971SDE bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 100 ENCFF643CGH, ENCFF715YUU, ENCFF717UVU 4551870416 ENCODE Processing Pipeline 0f8fa2f3dad816a5d505e8d3b9b933e7 https://www.encodeproject.org/files/ENCFF971SDE/@@download/ENCFF971SDE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF592NKP bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 100 ENCFF715YUU, ENCFF717UVU, ENCFF807MUK 4548914779 ENCODE Processing Pipeline 5c7087ef2c0ea449226f692cccc0f726 https://www.encodeproject.org/files/ENCFF592NKP/@@download/ENCFF592NKP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF926SRD bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF702FFH, ENCFF720AUK, ENCFF796JTX 6858870 ENCODE Processing Pipeline f6380b8ba63aac1a64539e12109a4fde https://www.encodeproject.org/files/ENCFF926SRD/@@download/ENCFF926SRD.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF119EHP bigBed narrowPeak conservative idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF804BSI 554679 ENCODE Processing Pipeline 966a5a01669882e77c2c9de8e248277c https://www.encodeproject.org/files/ENCFF119EHP/@@download/ENCFF119EHP.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF449EFC bigBed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF926SRD 13370705 ENCODE Processing Pipeline 6293686abc9c21fdeeeb009d6f9083e1 https://www.encodeproject.org/files/ENCFF449EFC/@@download/ENCFF449EFC.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF703UTR bigWig signal p-value ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF702FFH, ENCFF720AUK, ENCFF796JTX, ENCFF971SDE 1829173774 ENCODE Processing Pipeline 49cff3899f3c71fec6aab79016e7ee8a https://www.encodeproject.org/files/ENCFF703UTR/@@download/ENCFF703UTR.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF136JZE bigBed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF784QAW 13255959 ENCODE Processing Pipeline 8fcaa00fdda45dfd4d99cd7b217afbaf https://www.encodeproject.org/files/ENCFF136JZE/@@download/ENCFF136JZE.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF708EXD bigWig signal p-value ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF720AUK, ENCFF796JTX, ENCFF971SDE 1184857939 ENCODE Processing Pipeline 49e9a7fff18f95d4923525657268a725 https://www.encodeproject.org/files/ENCFF708EXD/@@download/ENCFF708EXD.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF184WKZ bigWig fold change over control ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF720AUK, ENCFF796JTX, ENCFF971SDE 1401230020 ENCODE Processing Pipeline 4b37fa495c345bac6ecafc76fceeb559 https://www.encodeproject.org/files/ENCFF184WKZ/@@download/ENCFF184WKZ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF784QAW bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF720AUK, ENCFF796JTX, ENCFF971SDE 7007513 ENCODE Processing Pipeline 72c2a3a4d4686051c957745f386cfee6 https://www.encodeproject.org/files/ENCFF784QAW/@@download/ENCFF784QAW.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF279AMR bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF702FFH, ENCFF720AUK, ENCFF796JTX, ENCFF971SDE 7232173 ENCODE Processing Pipeline 79d5ca717d545beb80dc84ac8902dbf6 https://www.encodeproject.org/files/ENCFF279AMR/@@download/ENCFF279AMR.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF150ZBH bed narrowPeak optimal idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF279AMR, ENCFF419RSJ, ENCFF784QAW, ENCFF926SRD 270063 ENCODE Processing Pipeline ae893670f45861e58e9a0249ed59a159 https://www.encodeproject.org/files/ENCFF150ZBH/@@download/ENCFF150ZBH.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF199VFN bigWig signal p-value ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF702FFH, ENCFF720AUK, ENCFF796JTX 1285727063 ENCODE Processing Pipeline 3ce7a00d9767b7bf26f38966c803dddd https://www.encodeproject.org/files/ENCFF199VFN/@@download/ENCFF199VFN.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF625ZLA bigBed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF279AMR 13169205 ENCODE Processing Pipeline cc24d3f0169d8458583a4f8145e0c751 https://www.encodeproject.org/files/ENCFF625ZLA/@@download/ENCFF625ZLA.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF690KRI bigWig fold change over control ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF702FFH, ENCFF720AUK, ENCFF796JTX 1331607286 ENCODE Processing Pipeline 2a438ec892de78203169faab93d4f40e https://www.encodeproject.org/files/ENCFF690KRI/@@download/ENCFF690KRI.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF324PVJ bigWig fold change over control ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF702FFH, ENCFF720AUK, ENCFF796JTX, ENCFF971SDE 1898292943 ENCODE Processing Pipeline bc842e6959d98b11e211320b09b96b6d https://www.encodeproject.org/files/ENCFF324PVJ/@@download/ENCFF324PVJ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF804BSI bed narrowPeak conservative idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF279AMR, ENCFF419RSJ, ENCFF784QAW, ENCFF926SRD 232019 ENCODE Processing Pipeline d04162820de4f0d8cc9199a39434f247 https://www.encodeproject.org/files/ENCFF804BSI/@@download/ENCFF804BSI.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF556BBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF150ZBH 619949 ENCODE Processing Pipeline b44f55abc1b9230871db44328c72a041 https://www.encodeproject.org/files/ENCFF556BBJ/@@download/ENCFF556BBJ.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF721CPJ bigWig signal p-value ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 1433298592 ENCODE Processing Pipeline 343730269ff968113cf039c6b66d47f3 https://www.encodeproject.org/files/ENCFF721CPJ/@@download/ENCFF721CPJ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF914AJQ bigWig fold change over control ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV 1337354176 ENCODE Processing Pipeline 2e06d97fed821c1953e041ddd6e682b2 https://www.encodeproject.org/files/ENCFF914AJQ/@@download/ENCFF914AJQ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF456OOM bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV 6854542 ENCODE Processing Pipeline e6e4d52162a7d18e475756a33fdeb8b6 https://www.encodeproject.org/files/ENCFF456OOM/@@download/ENCFF456OOM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF041RGN bigBed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF581AQD 13146541 ENCODE Processing Pipeline 7b21b29d5498bafcdf69a980988d4c26 https://www.encodeproject.org/files/ENCFF041RGN/@@download/ENCFF041RGN.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF194BBM bigBed narrowPeak conservative idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF277XFF 552106 ENCODE Processing Pipeline ea17cd5668fd0098e98400866fc484b2 https://www.encodeproject.org/files/ENCFF194BBM/@@download/ENCFF194BBM.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF285MPA bigWig fold change over control ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 1904504161 ENCODE Processing Pipeline 3431f07e0f49d4dbe9e1b0e2972b7524 https://www.encodeproject.org/files/ENCFF285MPA/@@download/ENCFF285MPA.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF581AQD bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 7228196 ENCODE Processing Pipeline c461aab5b9f774a56dd3b5460e43bec1 https://www.encodeproject.org/files/ENCFF581AQD/@@download/ENCFF581AQD.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF277XFF bed narrowPeak conservative idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF456OOM, ENCFF581AQD, ENCFF858GTB 231974 ENCODE Processing Pipeline a8f6ac2664609b2e863be3a413f87df1 https://www.encodeproject.org/files/ENCFF277XFF/@@download/ENCFF277XFF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF593DKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF396DNK 611941 ENCODE Processing Pipeline e794b48a5f84effb16b585858b12a1d8 https://www.encodeproject.org/files/ENCFF593DKZ/@@download/ENCFF593DKZ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF696BFQ bigWig signal p-value ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV 1283869194 ENCODE Processing Pipeline bd028fe50855ec386de5c4c234de412a https://www.encodeproject.org/files/ENCFF696BFQ/@@download/ENCFF696BFQ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF042EHN bigWig signal p-value ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 1542741927 ENCODE Processing Pipeline c9ccaa5c0aebc117672d5b82111bd9c1 https://www.encodeproject.org/files/ENCFF042EHN/@@download/ENCFF042EHN.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF787SAZ bigBed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF858GTB 13235354 ENCODE Processing Pipeline faf1a28974ade0d89918498730a46603 https://www.encodeproject.org/files/ENCFF787SAZ/@@download/ENCFF787SAZ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF195KER bigWig fold change over control ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 1413323918 ENCODE Processing Pipeline 6ec1247989b2da072a0f55b8ba56640b https://www.encodeproject.org/files/ENCFF195KER/@@download/ENCFF195KER.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF664FLZ bigBed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF456OOM 13355872 ENCODE Processing Pipeline dee819699d26a87253f1f3aad44f09fe https://www.encodeproject.org/files/ENCFF664FLZ/@@download/ENCFF664FLZ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF396DNK bed narrowPeak optimal idr thresholded peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF456OOM, ENCFF581AQD, ENCFF858GTB 266711 ENCODE Processing Pipeline d6cc530832de9f014b957dd7347ce74c https://www.encodeproject.org/files/ENCFF396DNK/@@download/ENCFF396DNK.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF858GTB bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 7008531 ENCODE Processing Pipeline c84638b834a4dfdbe88ee45d048f0ae4 https://www.encodeproject.org/files/ENCFF858GTB/@@download/ENCFF858GTB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF166CFL fastq reads ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 1 100 paired-ended 1 ENCFF115IMK 2187595631 Michael Snyder, Stanford 4b26cd37bc9527d726f8913ef70fd20d SRA:SRR6213713 https://www.encodeproject.org/files/ENCFF166CFL/@@download/ENCFF166CFL.fastq.gz Illumina HiSeq 4000 /files/ENCFF635NCC/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF115IMK fastq reads ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 1 100 paired-ended 2 ENCFF166CFL 2683978170 Michael Snyder, Stanford 10a16d3dfb963d91298e6b216623ac66 SRA:SRR6213713 https://www.encodeproject.org/files/ENCFF115IMK/@@download/ENCFF115IMK.fastq.gz Illumina HiSeq 4000 /files/ENCFF423TLJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF907PEU bam unfiltered alignments ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 100 ENCFF115IMK, ENCFF166CFL, ENCFF643CGH 4681770616 ENCODE Processing Pipeline 9accb7cf8ccf7752d092a2b894a00c9b https://www.encodeproject.org/files/ENCFF907PEU/@@download/ENCFF907PEU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF408DKA bam unfiltered alignments ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 100 ENCFF115IMK, ENCFF166CFL, ENCFF807MUK 4678137220 ENCODE Processing Pipeline f7077cddcf101350fff201bfa90f6581 https://www.encodeproject.org/files/ENCFF408DKA/@@download/ENCFF408DKA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF541QJE bam alignments ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 100 ENCFF115IMK, ENCFF166CFL, ENCFF643CGH 2871258437 ENCODE Processing Pipeline 23c48dc2c032ac334df13ab8ece12943 https://www.encodeproject.org/files/ENCFF541QJE/@@download/ENCFF541QJE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF606OCK bam alignments ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 100 ENCFF115IMK, ENCFF166CFL, ENCFF807MUK 2867561708 ENCODE Processing Pipeline 1303b017472aad2d69cd831ff6c6a50b https://www.encodeproject.org/files/ENCFF606OCK/@@download/ENCFF606OCK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF206QEE bigBed narrowPeak peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF289MUX 11519953 ENCODE Processing Pipeline 5746fd82626ae0a42c7a059c863d9e0a https://www.encodeproject.org/files/ENCFF206QEE/@@download/ENCFF206QEE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF988VKY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF001TDO, ENCFF289MUX 26192 ENCODE Processing Pipeline 667bfb117a291d60de9794e451088583 https://www.encodeproject.org/files/ENCFF988VKY/@@download/ENCFF988VKY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF504QTJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF988VKY 83641 ENCODE Processing Pipeline ab09c32474d57a5c08d94ed34a7f5846 https://www.encodeproject.org/files/ENCFF504QTJ/@@download/ENCFF504QTJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF323JBM bigWig signal p-value ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF606OCK, ENCFF679FAU 1057312430 ENCODE Processing Pipeline b3fae9dc05a7865bf4330d31e9d3be21 https://www.encodeproject.org/files/ENCFF323JBM/@@download/ENCFF323JBM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF757MYM bigWig fold change over control ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF606OCK, ENCFF679FAU 1016927284 ENCODE Processing Pipeline 08bb7102826ab3c35e3dc1237d35bf97 https://www.encodeproject.org/files/ENCFF757MYM/@@download/ENCFF757MYM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF289MUX bed narrowPeak peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF606OCK, ENCFF679FAU 5272939 ENCODE Processing Pipeline a899e3c199ed08d957e2af7229b6c382 https://www.encodeproject.org/files/ENCFF289MUX/@@download/ENCFF289MUX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF109OUQ bigWig signal p-value ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF051LKD, ENCFF541QJE 1104685892 ENCODE Processing Pipeline 5de6995351101f3077acd0699391600d https://www.encodeproject.org/files/ENCFF109OUQ/@@download/ENCFF109OUQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF142ZLR bigWig fold change over control ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF051LKD, ENCFF541QJE 1016618293 ENCODE Processing Pipeline 7499ce63448f44cf976cb49b0fb369f5 https://www.encodeproject.org/files/ENCFF142ZLR/@@download/ENCFF142ZLR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF928JLW bed narrowPeak peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF051LKD, ENCFF541QJE 5272572 ENCODE Processing Pipeline 7a1ba65d86395398f2b48aecd0281ada https://www.encodeproject.org/files/ENCFF928JLW/@@download/ENCFF928JLW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF952OGU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF865QLX 85347 ENCODE Processing Pipeline 09d9fd27759f45c2012e8e1a0d17d9b1 https://www.encodeproject.org/files/ENCFF952OGU/@@download/ENCFF952OGU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF131SKX bigBed narrowPeak peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF928JLW 11539649 ENCODE Processing Pipeline 1f9a896386e9f43866a53257a0506d34 https://www.encodeproject.org/files/ENCFF131SKX/@@download/ENCFF131SKX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF865QLX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF419RSJ, ENCFF928JLW 26866 ENCODE Processing Pipeline 7720a775c703473aee05822ba0d333b4 https://www.encodeproject.org/files/ENCFF865QLX/@@download/ENCFF865QLX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF996YRU fastq reads ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 2 ENCFF547OPO 3070855647 Michael Snyder, Stanford 3dadae36701383921438eaf38dc355dd SRA:SRR6212851 https://www.encodeproject.org/files/ENCFF996YRU/@@download/ENCFF996YRU.fastq.gz Illumina HiSeq 4000 /files/ENCFF164UIN/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF547OPO fastq reads ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 1 ENCFF996YRU 2633656073 Michael Snyder, Stanford 42639d8f6851fccd8c6dedc44e7d93b3 SRA:SRR6212851 https://www.encodeproject.org/files/ENCFF547OPO/@@download/ENCFF547OPO.fastq.gz Illumina HiSeq 4000 /files/ENCFF190AMK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF272QHW bam unfiltered alignments ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF547OPO, ENCFF643CGH, ENCFF996YRU 5051320465 ENCODE Processing Pipeline 4ce2940dcb7fbeb09297d86cdf762c89 https://www.encodeproject.org/files/ENCFF272QHW/@@download/ENCFF272QHW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF711MMM bam unfiltered alignments ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF547OPO, ENCFF807MUK, ENCFF996YRU 5054635573 ENCODE Processing Pipeline 31d158ed5af1b97505738df09caf60da https://www.encodeproject.org/files/ENCFF711MMM/@@download/ENCFF711MMM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF528OBT bam alignments ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF547OPO, ENCFF643CGH, ENCFF996YRU 2863670402 ENCODE Processing Pipeline d7bc376b942aa694b780c6c7db2bb444 https://www.encodeproject.org/files/ENCFF528OBT/@@download/ENCFF528OBT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF656GUQ bam alignments ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF547OPO, ENCFF807MUK, ENCFF996YRU 2859901328 ENCODE Processing Pipeline 6e92aa5f1445f1185243744481a7b393 https://www.encodeproject.org/files/ENCFF656GUQ/@@download/ENCFF656GUQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF653QSA bigWig signal p-value ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF447SCU, ENCFF656GUQ 966326418 ENCODE Processing Pipeline ed297d44a8a533999ee61dc75341ca7b https://www.encodeproject.org/files/ENCFF653QSA/@@download/ENCFF653QSA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF418EYD bigWig fold change over control ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF447SCU, ENCFF656GUQ 1059066934 ENCODE Processing Pipeline 0beaa78427f6c194fe4f0c79aa28942b https://www.encodeproject.org/files/ENCFF418EYD/@@download/ENCFF418EYD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF645DIC bed narrowPeak peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF447SCU, ENCFF656GUQ 6147395 ENCODE Processing Pipeline 8931f4895282e9c4a0c3dfe675a2ce9f https://www.encodeproject.org/files/ENCFF645DIC/@@download/ENCFF645DIC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF814VTW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF538YID 674239 ENCODE Processing Pipeline e9f1be67d532d925ed1589a4efae85b9 https://www.encodeproject.org/files/ENCFF814VTW/@@download/ENCFF814VTW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF006ZLM bigBed narrowPeak peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF645DIC 11390379 ENCODE Processing Pipeline b33cd03df66b4213c9a4abdbe1d9f00f https://www.encodeproject.org/files/ENCFF006ZLM/@@download/ENCFF006ZLM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF538YID bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF645DIC 292579 ENCODE Processing Pipeline 5cd65e2db67fa5025c42f445dd6b5f58 https://www.encodeproject.org/files/ENCFF538YID/@@download/ENCFF538YID.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF354ELA bigWig signal p-value ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF528OBT, ENCFF879BET 1117067208 ENCODE Processing Pipeline c2dbd4a4b74e43837b7e34994d60024a https://www.encodeproject.org/files/ENCFF354ELA/@@download/ENCFF354ELA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF144TOB bigWig fold change over control ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF528OBT, ENCFF879BET 1056737517 ENCODE Processing Pipeline f9ef56ec9631023af17b50b57d47e6fe https://www.encodeproject.org/files/ENCFF144TOB/@@download/ENCFF144TOB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF326UJU bed narrowPeak peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF528OBT, ENCFF879BET 6165847 ENCODE Processing Pipeline 842c2c5e48bde85aae7eb7a482d8320b https://www.encodeproject.org/files/ENCFF326UJU/@@download/ENCFF326UJU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF145HYI bigBed narrowPeak peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF326UJU 11423882 ENCODE Processing Pipeline 0fc130f351a77e6882ec29297142ca76 https://www.encodeproject.org/files/ENCFF145HYI/@@download/ENCFF145HYI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF157FXA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF326UJU, ENCFF419RSJ 294898 ENCODE Processing Pipeline 07cee059a71e1ef3d3d82f496cab7979 https://www.encodeproject.org/files/ENCFF157FXA/@@download/ENCFF157FXA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF023FUM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF157FXA 676721 ENCODE Processing Pipeline 2590b461c4ab6fa0aa18dc106c047a48 https://www.encodeproject.org/files/ENCFF023FUM/@@download/ENCFF023FUM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF238XIH fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 1 ENCFF183QAJ 2491540327 Michael Snyder, Stanford 9358ab6230fe616f1492e15c4df63ecb SRA:SRR6214035 https://www.encodeproject.org/files/ENCFF238XIH/@@download/ENCFF238XIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF183QAJ fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 1 100 paired-ended 2 ENCFF238XIH 2498152327 Michael Snyder, Stanford 53c09f9aad4c9798ca4c19ed32a06990 SRA:SRR6214035 https://www.encodeproject.org/files/ENCFF183QAJ/@@download/ENCFF183QAJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF431UPR fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF530OLZ 3319197958 Michael Snyder, Stanford 1f4749b1ca0d7008bd7bd101058cce0f SRA:SRR6214034 https://www.encodeproject.org/files/ENCFF431UPR/@@download/ENCFF431UPR.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF530OLZ fastq reads ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF431UPR 2917698023 Michael Snyder, Stanford 2c63339c9f1d5af5b0de393265e27eee SRA:SRR6214034 https://www.encodeproject.org/files/ENCFF530OLZ/@@download/ENCFF530OLZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF252ZMP bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF807MUK 4273213264 ENCODE Processing Pipeline 7c8d83aa8f2c06d8b891835974d3281d https://www.encodeproject.org/files/ENCFF252ZMP/@@download/ENCFF252ZMP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF744FOT bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF643CGH 4271564469 ENCODE Processing Pipeline d64c8d9384c5bba4137f7327d6ccc6e8 https://www.encodeproject.org/files/ENCFF744FOT/@@download/ENCFF744FOT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF844WSE bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF807MUK 5400181038 ENCODE Processing Pipeline a43bf24cb1e25b7d064fc827401fdf56 https://www.encodeproject.org/files/ENCFF844WSE/@@download/ENCFF844WSE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF239NLE bam unfiltered alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF643CGH 5398079190 ENCODE Processing Pipeline e0595dfa29d8b723102753c2264341f3 https://www.encodeproject.org/files/ENCFF239NLE/@@download/ENCFF239NLE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF112UBX bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF643CGH 2620812375 ENCODE Processing Pipeline 5aee8da56116d72d05be57fc74c989f3 https://www.encodeproject.org/files/ENCFF112UBX/@@download/ENCFF112UBX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF455LNX bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF807MUK 2617638268 ENCODE Processing Pipeline a7e3697ec3cc12c498f71b29ed59b680 https://www.encodeproject.org/files/ENCFF455LNX/@@download/ENCFF455LNX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF194UHW bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF807MUK 3438886199 ENCODE Processing Pipeline 0fa9c81384860ddcfaad6f7a7d0b4c5c https://www.encodeproject.org/files/ENCFF194UHW/@@download/ENCFF194UHW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF116EPL bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF643CGH 3444103327 ENCODE Processing Pipeline 3e18f20a967992ad4ab4a304a8489d45 https://www.encodeproject.org/files/ENCFF116EPL/@@download/ENCFF116EPL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF429JYW bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 1197871351 ENCODE Processing Pipeline be1cff0efce7f4e3f098184bbeb5cf20 https://www.encodeproject.org/files/ENCFF429JYW/@@download/ENCFF429JYW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF079KFT bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF194UHW, ENCFF455LNX, ENCFF592WAL, ENCFF901CND 1815824865 ENCODE Processing Pipeline 318c9a9e07e132ef05dd5599bf1dd7e5 https://www.encodeproject.org/files/ENCFF079KFT/@@download/ENCFF079KFT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF731GMX bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 1014423623 ENCODE Processing Pipeline 31d34cfcfb0374199a082435de3016c6 https://www.encodeproject.org/files/ENCFF731GMX/@@download/ENCFF731GMX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF582GYD bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 998570546 ENCODE Processing Pipeline 430069e37b8520015daad7de59960cc2 https://www.encodeproject.org/files/ENCFF582GYD/@@download/ENCFF582GYD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF301EBX bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 1217353019 ENCODE Processing Pipeline 637322679939264e2a603c67ec0d1602 https://www.encodeproject.org/files/ENCFF301EBX/@@download/ENCFF301EBX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF827HKI bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF194UHW, ENCFF455LNX, ENCFF592WAL, ENCFF901CND 2092979934 ENCODE Processing Pipeline bce4dae34b858100080b6243b12a369b https://www.encodeproject.org/files/ENCFF827HKI/@@download/ENCFF827HKI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF601WVR bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 5571610 ENCODE Processing Pipeline b3900061f42ddea7742208c0ace9f16a https://www.encodeproject.org/files/ENCFF601WVR/@@download/ENCFF601WVR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF531FOV bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 5986594 ENCODE Processing Pipeline 54a5acef1203551a9692d93b280d8fca https://www.encodeproject.org/files/ENCFF531FOV/@@download/ENCFF531FOV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF595TGO bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF194UHW, ENCFF455LNX, ENCFF592WAL, ENCFF901CND 6954838 ENCODE Processing Pipeline 5bc39d46231bd3351c729d95af5c07b9 https://www.encodeproject.org/files/ENCFF595TGO/@@download/ENCFF595TGO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF373XGW bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF601WVR 11479615 ENCODE Processing Pipeline 382124c6b43f14a34c0b01c82e75b41c https://www.encodeproject.org/files/ENCFF373XGW/@@download/ENCFF373XGW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF723UCP bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF531FOV 11481776 ENCODE Processing Pipeline 2caefa77987c5dd992bbf83d269931a9 https://www.encodeproject.org/files/ENCFF723UCP/@@download/ENCFF723UCP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF661AIZ bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF595TGO 11419472 ENCODE Processing Pipeline ea8768d9113076ed35ec332015a12c5b https://www.encodeproject.org/files/ENCFF661AIZ/@@download/ENCFF661AIZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF237IPT bed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF531FOV, ENCFF595TGO, ENCFF601WVR 210893 ENCODE Processing Pipeline 1148d4d190f740ca04d1da1c3c130161 https://www.encodeproject.org/files/ENCFF237IPT/@@download/ENCFF237IPT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF603BBW bigBed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF237IPT 440362 ENCODE Processing Pipeline 146a5cc8db0be65e8f8398f83abad264 https://www.encodeproject.org/files/ENCFF603BBW/@@download/ENCFF603BBW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF017LZE bed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF001TDO, ENCFF531FOV, ENCFF595TGO, ENCFF601WVR 290462 ENCODE Processing Pipeline 67d4968a8aa146ff684f8bb6aabb0364 https://www.encodeproject.org/files/ENCFF017LZE/@@download/ENCFF017LZE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF849JFR bigBed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF017LZE 553463 ENCODE Processing Pipeline 91d7f391ef67745616ba798c8e736f66 https://www.encodeproject.org/files/ENCFF849JFR/@@download/ENCFF849JFR.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF897RYA bed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF262WGY, ENCFF419RSJ, ENCFF461PBL, ENCFF997PZQ 297733 ENCODE Processing Pipeline 96759423f9fb968337e86fbc634eae3c https://www.encodeproject.org/files/ENCFF897RYA/@@download/ENCFF897RYA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF623CWL bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF112UBX, ENCFF666ATR 892109262 ENCODE Processing Pipeline 05ca5dce4070d9e4474db89c55ea91ec https://www.encodeproject.org/files/ENCFF623CWL/@@download/ENCFF623CWL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF013ZOI bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF112UBX, ENCFF116EPL, ENCFF322NTO, ENCFF666ATR 2068126118 ENCODE Processing Pipeline 4e89c8134d7867ad5db4a6bbe60f917a https://www.encodeproject.org/files/ENCFF013ZOI/@@download/ENCFF013ZOI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF461PBL bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF112UBX, ENCFF666ATR 5569235 ENCODE Processing Pipeline c0694eea61fab6cd5c81203699250ebe https://www.encodeproject.org/files/ENCFF461PBL/@@download/ENCFF461PBL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF997PZQ bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF116EPL, ENCFF322NTO 5992084 ENCODE Processing Pipeline 0ef227b472b149acd58722e5c1e1b58d https://www.encodeproject.org/files/ENCFF997PZQ/@@download/ENCFF997PZQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF262WGY bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF112UBX, ENCFF116EPL, ENCFF322NTO, ENCFF666ATR 7016466 ENCODE Processing Pipeline 80b7c712eff25a14e6fc84bffb0fd44b https://www.encodeproject.org/files/ENCFF262WGY/@@download/ENCFF262WGY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF965FWA bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF112UBX, ENCFF666ATR 1005980891 ENCODE Processing Pipeline c1b6b9262f6c249dbfd06688c8093558 https://www.encodeproject.org/files/ENCFF965FWA/@@download/ENCFF965FWA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF300YEH bed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF262WGY, ENCFF419RSJ, ENCFF461PBL, ENCFF997PZQ 219037 ENCODE Processing Pipeline e0a4f748bb05851856eca600bd9d722f https://www.encodeproject.org/files/ENCFF300YEH/@@download/ENCFF300YEH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF703EGZ bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF116EPL, ENCFF322NTO 1222770542 ENCODE Processing Pipeline 156a13bcde764bfff6ee4877cff9558b https://www.encodeproject.org/files/ENCFF703EGZ/@@download/ENCFF703EGZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF517OHQ bigWig fold change over control ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF116EPL, ENCFF322NTO 1225906922 ENCODE Processing Pipeline cb22869f41c43dd80b255d0531889967 https://www.encodeproject.org/files/ENCFF517OHQ/@@download/ENCFF517OHQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF373SDO bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF461PBL 11489531 ENCODE Processing Pipeline c3028f8b1db92422615164ef19580fc0 https://www.encodeproject.org/files/ENCFF373SDO/@@download/ENCFF373SDO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF021XED bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF997PZQ 11506084 ENCODE Processing Pipeline 1f7edec78a83780482b460eb846230e8 https://www.encodeproject.org/files/ENCFF021XED/@@download/ENCFF021XED.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF265XQE bigBed narrowPeak conservative idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF300YEH 451477 ENCODE Processing Pipeline 1f465bda1f51599ad66cf675379f0d18 https://www.encodeproject.org/files/ENCFF265XQE/@@download/ENCFF265XQE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF343HCK bigWig signal p-value ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF112UBX, ENCFF116EPL, ENCFF322NTO, ENCFF666ATR 1644552938 ENCODE Processing Pipeline 4fb469dd10d1ade76d0f84ed8496c046 https://www.encodeproject.org/files/ENCFF343HCK/@@download/ENCFF343HCK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF920RLG bigBed narrowPeak optimal idr thresholded peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF897RYA 565071 ENCODE Processing Pipeline 84812dd0fcc0732dd6722307479417fa https://www.encodeproject.org/files/ENCFF920RLG/@@download/ENCFF920RLG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF502HSY bigBed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1, 2 ENCFF262WGY 11453742 ENCODE Processing Pipeline 93bac8f00fd27bef60b6fe1d3cad875a https://www.encodeproject.org/files/ENCFF502HSY/@@download/ENCFF502HSY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF124KEV fastq reads ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF584BPF 2434851966 Michael Snyder, Stanford 860894dd2811469c3325f32988386d7c SRA:SRR6212895 https://www.encodeproject.org/files/ENCFF124KEV/@@download/ENCFF124KEV.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF971CJJ fastq reads ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF928ZAS 2466912899 Michael Snyder, Stanford 8953543020745f11b7c3f75c562802e6 SRA:SRR6212894 https://www.encodeproject.org/files/ENCFF971CJJ/@@download/ENCFF971CJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF928ZAS fastq reads ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF971CJJ 2432662797 Michael Snyder, Stanford 435645c943c14592b0f782a5a8500404 SRA:SRR6212894 https://www.encodeproject.org/files/ENCFF928ZAS/@@download/ENCFF928ZAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF584BPF fastq reads ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF124KEV 2466120854 Michael Snyder, Stanford 1e30c68ada42c8c994a66fe7a728dddf SRA:SRR6212895 https://www.encodeproject.org/files/ENCFF584BPF/@@download/ENCFF584BPF.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF930PEE bam unfiltered alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 100 ENCFF124KEV, ENCFF584BPF, ENCFF643CGH 5142572807 ENCODE Processing Pipeline d70d171bba435eb978ed4c6719319d51 https://www.encodeproject.org/files/ENCFF930PEE/@@download/ENCFF930PEE.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF795FKF bam unfiltered alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 100 ENCFF807MUK, ENCFF928ZAS, ENCFF971CJJ 5299003878 ENCODE Processing Pipeline 1d313b5e06abd4dd8866ba60a0783067 https://www.encodeproject.org/files/ENCFF795FKF/@@download/ENCFF795FKF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF884LNX bam unfiltered alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643CGH, ENCFF928ZAS, ENCFF971CJJ 5302268861 ENCODE Processing Pipeline 7959babad9de706d779f7eea8cd1efe6 https://www.encodeproject.org/files/ENCFF884LNX/@@download/ENCFF884LNX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF340CRM bam unfiltered alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 100 ENCFF124KEV, ENCFF584BPF, ENCFF807MUK 5141099836 ENCODE Processing Pipeline 107a37460a1d46c75b58d78d370dd9a9 https://www.encodeproject.org/files/ENCFF340CRM/@@download/ENCFF340CRM.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF246CLD bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 100 ENCFF124KEV, ENCFF584BPF, ENCFF643CGH 3215226032 ENCODE Processing Pipeline dc0315876240e3cfe3dcec4785e77fad https://www.encodeproject.org/files/ENCFF246CLD/@@download/ENCFF246CLD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF158RWF bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 100 ENCFF807MUK, ENCFF928ZAS, ENCFF971CJJ 3794979372 ENCODE Processing Pipeline a2f1f488c331aea69c4b91ead2d8fe08 https://www.encodeproject.org/files/ENCFF158RWF/@@download/ENCFF158RWF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF104VVO bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643CGH, ENCFF928ZAS, ENCFF971CJJ 3797103587 ENCODE Processing Pipeline 5ee3f125e8d13f2be45c7f4c68ca620d https://www.encodeproject.org/files/ENCFF104VVO/@@download/ENCFF104VVO.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF851YDT bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 100 ENCFF124KEV, ENCFF584BPF, ENCFF807MUK 3213871873 ENCODE Processing Pipeline da44ff612dde64e74217e2a6b5075c5b https://www.encodeproject.org/files/ENCFF851YDT/@@download/ENCFF851YDT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF462LKS bigWig fold change over control ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF104VVO, ENCFF720AUK, ENCFF796JTX 1197840583 ENCODE Processing Pipeline 696aa01805177ee66449bf8674b8c113 https://www.encodeproject.org/files/ENCFF462LKS/@@download/ENCFF462LKS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF905KWH bigWig signal p-value ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF104VVO, ENCFF720AUK, ENCFF796JTX 1094591953 ENCODE Processing Pipeline 6bfab70c68c31edc9732e4d032216491 https://www.encodeproject.org/files/ENCFF905KWH/@@download/ENCFF905KWH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF533OEC bigWig signal p-value ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF246CLD, ENCFF720AUK, ENCFF796JTX 1048167214 ENCODE Processing Pipeline 04f5a3a72aa1e64f1a1931eb8a7356f3 https://www.encodeproject.org/files/ENCFF533OEC/@@download/ENCFF533OEC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF596QQG bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF104VVO, ENCFF720AUK, ENCFF796JTX 6119533 ENCODE Processing Pipeline b8bcc7de70a19175d487e4244f91e19f https://www.encodeproject.org/files/ENCFF596QQG/@@download/ENCFF596QQG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF060HDY bigWig signal p-value ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF104VVO, ENCFF246CLD, ENCFF720AUK, ENCFF796JTX 1492839925 ENCODE Processing Pipeline 6d46634dccfe37a9e04759dd8feef831 https://www.encodeproject.org/files/ENCFF060HDY/@@download/ENCFF060HDY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF898WGW bigWig fold change over control ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF246CLD, ENCFF720AUK, ENCFF796JTX 1090696986 ENCODE Processing Pipeline 597ca274769f4a117d81e1e20ba338da https://www.encodeproject.org/files/ENCFF898WGW/@@download/ENCFF898WGW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF349HMF bigBed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF596QQG 11292916 ENCODE Processing Pipeline 9f2da878de8953e7544ccb14fc47ecbb https://www.encodeproject.org/files/ENCFF349HMF/@@download/ENCFF349HMF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF108MZX bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF246CLD, ENCFF720AUK, ENCFF796JTX 5951461 ENCODE Processing Pipeline c8f6404ade36f5adf95dfc7c0bd287d2 https://www.encodeproject.org/files/ENCFF108MZX/@@download/ENCFF108MZX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF440ZUU bigBed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF108MZX 11328593 ENCODE Processing Pipeline cca41c091b445085dc2e44b2813c23bf https://www.encodeproject.org/files/ENCFF440ZUU/@@download/ENCFF440ZUU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF013EHI bed narrowPeak optimal idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF108MZX, ENCFF419RSJ, ENCFF505RTU, ENCFF596QQG 58792 ENCODE Processing Pipeline ec6f331bac36a3d59fc3b1c9c9a1aef2 https://www.encodeproject.org/files/ENCFF013EHI/@@download/ENCFF013EHI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF579FTT bigBed narrowPeak optimal idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF013EHI 153300 ENCODE Processing Pipeline aae35a75316d5e50a076ada6a90f88f9 https://www.encodeproject.org/files/ENCFF579FTT/@@download/ENCFF579FTT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF896XZH bigWig fold change over control ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF104VVO, ENCFF246CLD, ENCFF720AUK, ENCFF796JTX 1647371126 ENCODE Processing Pipeline 8bae27fd90f52ce400723d42bf2609dc https://www.encodeproject.org/files/ENCFF896XZH/@@download/ENCFF896XZH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF777IXN bigBed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF505RTU 10969911 ENCODE Processing Pipeline 384c545fabc525d110a122e2aeb05d23 https://www.encodeproject.org/files/ENCFF777IXN/@@download/ENCFF777IXN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF910WWV bed narrowPeak conservative idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF108MZX, ENCFF419RSJ, ENCFF505RTU, ENCFF596QQG 46020 ENCODE Processing Pipeline d9bfbad5d75440c5348e0129e544fd3a https://www.encodeproject.org/files/ENCFF910WWV/@@download/ENCFF910WWV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF335EMO bigBed narrowPeak conservative idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF910WWV 134502 ENCODE Processing Pipeline e99be42f34a140a9d7ab22e2dd70763f https://www.encodeproject.org/files/ENCFF335EMO/@@download/ENCFF335EMO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF505RTU bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF104VVO, ENCFF246CLD, ENCFF720AUK, ENCFF796JTX 6778720 ENCODE Processing Pipeline d7a99efd5ba2f8241b7b11313a9cfdf2 https://www.encodeproject.org/files/ENCFF505RTU/@@download/ENCFF505RTU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF125KIG bigWig fold change over control ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 1090934255 ENCODE Processing Pipeline ff8af155985ff6dc94e1975e13445f4a https://www.encodeproject.org/files/ENCFF125KIG/@@download/ENCFF125KIG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF649PUW bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV 6116974 ENCODE Processing Pipeline 547bd70b8c068f6f139acc80b31b39da https://www.encodeproject.org/files/ENCFF649PUW/@@download/ENCFF649PUW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF511NCS bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 6775439 ENCODE Processing Pipeline b26eb16256e9113023802d6813e2adf1 https://www.encodeproject.org/files/ENCFF511NCS/@@download/ENCFF511NCS.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF307PKQ bigWig signal p-value ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 1431585091 ENCODE Processing Pipeline 49273826c246f0c3cf53da3d3caa9c04 https://www.encodeproject.org/files/ENCFF307PKQ/@@download/ENCFF307PKQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF647ARK bigBed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF649PUW 11273054 ENCODE Processing Pipeline 4b9d4c7d85bb5d612029bc74e7067cb2 https://www.encodeproject.org/files/ENCFF647ARK/@@download/ENCFF647ARK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF407IBB bigWig signal p-value ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV 1292755861 ENCODE Processing Pipeline 1b77227caded0d28e2e8a689e3f17910 https://www.encodeproject.org/files/ENCFF407IBB/@@download/ENCFF407IBB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF300UZF bigWig fold change over control ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV 1194867405 ENCODE Processing Pipeline c39d32879489592d13cddbe61848be24 https://www.encodeproject.org/files/ENCFF300UZF/@@download/ENCFF300UZF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF210HPA bigWig signal p-value ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 1033055687 ENCODE Processing Pipeline 48fe4319ae553f12ecbeba380b633c15 https://www.encodeproject.org/files/ENCFF210HPA/@@download/ENCFF210HPA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF384FEX bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 5954915 ENCODE Processing Pipeline cd518e0e1b3e7bf35d91cf484ccb44f1 https://www.encodeproject.org/files/ENCFF384FEX/@@download/ENCFF384FEX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF092HAB bigBed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF384FEX 11311268 ENCODE Processing Pipeline a878653f264459bd9ee885808d6a91d8 https://www.encodeproject.org/files/ENCFF092HAB/@@download/ENCFF092HAB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF103XPY bigWig fold change over control ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 1655828931 ENCODE Processing Pipeline 63fe0e4d224a5fa21ac816174ceb19de https://www.encodeproject.org/files/ENCFF103XPY/@@download/ENCFF103XPY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF464ISB bigBed narrowPeak optimal idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF310AGG 153158 ENCODE Processing Pipeline 0de2ea98a3fe5a635bee804a842e560d https://www.encodeproject.org/files/ENCFF464ISB/@@download/ENCFF464ISB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF217IVZ bigBed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF511NCS 10957791 ENCODE Processing Pipeline e484832ebb15bd53109babbbbefb33fa https://www.encodeproject.org/files/ENCFF217IVZ/@@download/ENCFF217IVZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF987GXS bed narrowPeak conservative idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF384FEX, ENCFF511NCS, ENCFF649PUW 45337 ENCODE Processing Pipeline 1813a53bd4e912a3e39083983ac631e7 https://www.encodeproject.org/files/ENCFF987GXS/@@download/ENCFF987GXS.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF683VLI bigBed narrowPeak conservative idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF987GXS 132273 ENCODE Processing Pipeline 02a787f7994118b38df7bfb8532dfeee https://www.encodeproject.org/files/ENCFF683VLI/@@download/ENCFF683VLI.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF310AGG bed narrowPeak optimal idr thresholded peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF384FEX, ENCFF511NCS, ENCFF649PUW 59622 ENCODE Processing Pipeline 8660b9cd4ca65717017ecba1ad02391d https://www.encodeproject.org/files/ENCFF310AGG/@@download/ENCFF310AGG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF206XVH fastq reads ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF130KTQ 5424536582 Michael Snyder, Stanford 16b6fa1b446e9be9ffed8962ebc0e1cb https://www.encodeproject.org/files/ENCFF206XVH/@@download/ENCFF206XVH.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF130KTQ fastq reads ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF206XVH 4830444521 Michael Snyder, Stanford f4f1c27bbff0f7f18e990f533f00b47e https://www.encodeproject.org/files/ENCFF130KTQ/@@download/ENCFF130KTQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF208FVT fastq reads ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF675BIJ 3011812715 Michael Snyder, Stanford b7ea9d57df5d26f1ec8bee6a39689c22 https://www.encodeproject.org/files/ENCFF208FVT/@@download/ENCFF208FVT.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF675BIJ fastq reads ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF208FVT 2571569553 Michael Snyder, Stanford 9c2f16b21bf818309c8fa8705da02857 https://www.encodeproject.org/files/ENCFF675BIJ/@@download/ENCFF675BIJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF173BBD bam unfiltered alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF208FVT, ENCFF675BIJ, ENCFF807MUK 4711639092 ENCODE Processing Pipeline fc837c686316cfa6da7f71a6d39f3474 https://www.encodeproject.org/files/ENCFF173BBD/@@download/ENCFF173BBD.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF313XEW bam unfiltered alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF208FVT, ENCFF643CGH, ENCFF675BIJ 4707139609 ENCODE Processing Pipeline 6b0ac91a48ee5b6338973c5da7c05ee7 https://www.encodeproject.org/files/ENCFF313XEW/@@download/ENCFF313XEW.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF271HNN bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF208FVT, ENCFF643CGH, ENCFF675BIJ 1745608391 ENCODE Processing Pipeline e53b8ba2debfd31c52e3b73dc83fbc1e https://www.encodeproject.org/files/ENCFF271HNN/@@download/ENCFF271HNN.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF046FQA bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF208FVT, ENCFF675BIJ, ENCFF807MUK 1743833447 ENCODE Processing Pipeline 88f712cfc40afb3b0e65f243ce16c65a https://www.encodeproject.org/files/ENCFF046FQA/@@download/ENCFF046FQA.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF360LZN bam unfiltered alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF130KTQ, ENCFF206XVH, ENCFF643CGH 9430819874 ENCODE Processing Pipeline 1b92df2ef515590349ef54462a4b2e62 https://www.encodeproject.org/files/ENCFF360LZN/@@download/ENCFF360LZN.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF105PQX bam unfiltered alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF130KTQ, ENCFF206XVH, ENCFF807MUK 9419253864 ENCODE Processing Pipeline e3335c0f452bb83f0b040c15ecebbe1d https://www.encodeproject.org/files/ENCFF105PQX/@@download/ENCFF105PQX.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF644FOH bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF130KTQ, ENCFF206XVH, ENCFF643CGH 6777688375 ENCODE Processing Pipeline c94cb92db37ae0cd26ab472f34cb2c4e https://www.encodeproject.org/files/ENCFF644FOH/@@download/ENCFF644FOH.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF770KIN bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF130KTQ, ENCFF206XVH, ENCFF807MUK 6767492163 ENCODE Processing Pipeline 78ffde63bfa1c6edeef7320a9771d169 https://www.encodeproject.org/files/ENCFF770KIN/@@download/ENCFF770KIN.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF400JZR bigWig signal p-value ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF046FQA, ENCFF447KVS, ENCFF823USR 1236606082 ENCODE Processing Pipeline a8dbbb733c151c62377d7b46c423312e https://www.encodeproject.org/files/ENCFF400JZR/@@download/ENCFF400JZR.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF291UJR bigWig signal p-value ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF770KIN, ENCFF823USR 2085917503 ENCODE Processing Pipeline 0ebf2059171fecb876de48f2267f6e3d https://www.encodeproject.org/files/ENCFF291UJR/@@download/ENCFF291UJR.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF795RGC bigWig signal p-value ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF046FQA, ENCFF447KVS, ENCFF770KIN, ENCFF823USR 2229993509 ENCODE Processing Pipeline 7be0c13aeea24ca57207c43203d80ea8 https://www.encodeproject.org/files/ENCFF795RGC/@@download/ENCFF795RGC.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF203KBE bigWig fold change over control ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF046FQA, ENCFF447KVS, ENCFF823USR 1054554058 ENCODE Processing Pipeline 6e1ccacec7898f30b735c0880ba9b286 https://www.encodeproject.org/files/ENCFF203KBE/@@download/ENCFF203KBE.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF838XBX bigWig fold change over control ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF770KIN, ENCFF823USR 2129786035 ENCODE Processing Pipeline 791138ad30d0caa0e1c59fdc4ae58acb https://www.encodeproject.org/files/ENCFF838XBX/@@download/ENCFF838XBX.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF824VGY bigWig fold change over control ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF046FQA, ENCFF447KVS, ENCFF770KIN, ENCFF823USR 2285256441 ENCODE Processing Pipeline 3949dbf78b7c3444807054a22ff0b65f https://www.encodeproject.org/files/ENCFF824VGY/@@download/ENCFF824VGY.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF467LRK bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF046FQA, ENCFF447KVS, ENCFF823USR 5976838 ENCODE Processing Pipeline 1be7a7769b255c27e966f1023c1e11cd https://www.encodeproject.org/files/ENCFF467LRK/@@download/ENCFF467LRK.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF535WCX bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF770KIN, ENCFF823USR 7208747 ENCODE Processing Pipeline 5763392383dc2aef3852b66e976b6271 https://www.encodeproject.org/files/ENCFF535WCX/@@download/ENCFF535WCX.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF320SOL bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF046FQA, ENCFF447KVS, ENCFF770KIN, ENCFF823USR 7232515 ENCODE Processing Pipeline 5d5dff7e9d70b1fcd5f38042e25ee53d https://www.encodeproject.org/files/ENCFF320SOL/@@download/ENCFF320SOL.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF698VYH bigBed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF467LRK 11190451 ENCODE Processing Pipeline d8572acdcee31631eed482e052e2b1ea https://www.encodeproject.org/files/ENCFF698VYH/@@download/ENCFF698VYH.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF257RDN bigBed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF535WCX 13232295 ENCODE Processing Pipeline 84cf1c7f732d348d343f08b736522346 https://www.encodeproject.org/files/ENCFF257RDN/@@download/ENCFF257RDN.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF467ADT bed narrowPeak conservative idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF320SOL, ENCFF467LRK, ENCFF535WCX 103805 ENCODE Processing Pipeline ef6860dea24c8a842f53f98c7c72e3b8 https://www.encodeproject.org/files/ENCFF467ADT/@@download/ENCFF467ADT.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF655GAW bigBed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF320SOL 13248806 ENCODE Processing Pipeline 51a8b2a69fd44de3fafb886fb5901144 https://www.encodeproject.org/files/ENCFF655GAW/@@download/ENCFF655GAW.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF313BFM bed narrowPeak optimal idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF320SOL, ENCFF467LRK, ENCFF535WCX 162137 ENCODE Processing Pipeline 8cce725c439176ebe35d13b734e7c48f https://www.encodeproject.org/files/ENCFF313BFM/@@download/ENCFF313BFM.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF018QWL bigBed narrowPeak conservative idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF467ADT 251340 ENCODE Processing Pipeline 40f1d962e1d6053c3627932f981a8686 https://www.encodeproject.org/files/ENCFF018QWL/@@download/ENCFF018QWL.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF003VTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF313BFM 342894 ENCODE Processing Pipeline f82b7a67439232401c280803a2fda659 https://www.encodeproject.org/files/ENCFF003VTJ/@@download/ENCFF003VTJ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF275BDB bigWig signal p-value ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF271HNN, ENCFF746SKT 1247299736 ENCODE Processing Pipeline 998e20497fa6d8d0a31c42c87c51a201 https://www.encodeproject.org/files/ENCFF275BDB/@@download/ENCFF275BDB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF535RCV bigWig signal p-value ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF644FOH, ENCFF746SKT 1772354071 ENCODE Processing Pipeline 85e06b45ac7608b977c2e455c88b1c84 https://www.encodeproject.org/files/ENCFF535RCV/@@download/ENCFF535RCV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF493FXF bigWig signal p-value ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF271HNN, ENCFF644FOH, ENCFF746SKT 2233341777 ENCODE Processing Pipeline ff98e1d656d8fc2a7d9cd65aa9988efa https://www.encodeproject.org/files/ENCFF493FXF/@@download/ENCFF493FXF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF069YSR bigWig fold change over control ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF271HNN, ENCFF746SKT 1056383750 ENCODE Processing Pipeline 6c82519bea261099fd670777d73ac1d0 https://www.encodeproject.org/files/ENCFF069YSR/@@download/ENCFF069YSR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF682LNX bigWig fold change over control ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF644FOH, ENCFF746SKT 2140871272 ENCODE Processing Pipeline 15291e045f2d88d07f13f2f79c33d0a3 https://www.encodeproject.org/files/ENCFF682LNX/@@download/ENCFF682LNX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF340WVN bigWig fold change over control ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF271HNN, ENCFF644FOH, ENCFF746SKT 2295415413 ENCODE Processing Pipeline d7033c5b14763782639c3f506ab5c9e8 https://www.encodeproject.org/files/ENCFF340WVN/@@download/ENCFF340WVN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF779QJW bigBed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF009FWE 13245125 ENCODE Processing Pipeline 2802303e906eff5613b259f6b23703b7 https://www.encodeproject.org/files/ENCFF779QJW/@@download/ENCFF779QJW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF999EYH bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF271HNN, ENCFF746SKT 5872829 ENCODE Processing Pipeline a6fec7c12cde6c698b3a2c07f4a77383 https://www.encodeproject.org/files/ENCFF999EYH/@@download/ENCFF999EYH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF009FWE bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF644FOH, ENCFF746SKT 7191411 ENCODE Processing Pipeline 67e50f475753fdca6e7f599289b9cf86 https://www.encodeproject.org/files/ENCFF009FWE/@@download/ENCFF009FWE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF990SVN bigBed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF922DWK 13249366 ENCODE Processing Pipeline 359150561977ae2e29f061eb821dc847 https://www.encodeproject.org/files/ENCFF990SVN/@@download/ENCFF990SVN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF968QGZ bed narrowPeak conservative idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009FWE, ENCFF419RSJ, ENCFF922DWK, ENCFF999EYH 103834 ENCODE Processing Pipeline e90af0bdd206ab97d874a2a0dcfe35e3 https://www.encodeproject.org/files/ENCFF968QGZ/@@download/ENCFF968QGZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF922DWK bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF271HNN, ENCFF644FOH, ENCFF746SKT 7225670 ENCODE Processing Pipeline efc220f31cbada4e70c59fe36f361e58 https://www.encodeproject.org/files/ENCFF922DWK/@@download/ENCFF922DWK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF249IFZ bigBed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF999EYH 11189971 ENCODE Processing Pipeline 8d5680e98b4c7b8ff4d4f86e5edf520e https://www.encodeproject.org/files/ENCFF249IFZ/@@download/ENCFF249IFZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF557GVI bigBed narrowPeak optimal idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF305CRL 342423 ENCODE Processing Pipeline cd17d7b2e3e1bca463cf7d45165358f7 https://www.encodeproject.org/files/ENCFF557GVI/@@download/ENCFF557GVI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF982FIG bigBed narrowPeak conservative idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF968QGZ 251594 ENCODE Processing Pipeline a60cd8b03fb965aaffe8033e9c17855b https://www.encodeproject.org/files/ENCFF982FIG/@@download/ENCFF982FIG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF305CRL bed narrowPeak optimal idr thresholded peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF009FWE, ENCFF419RSJ, ENCFF922DWK, ENCFF999EYH 162054 ENCODE Processing Pipeline 640c07c6e96cfcd9c776b752ab2e6f9b https://www.encodeproject.org/files/ENCFF305CRL/@@download/ENCFF305CRL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF464DYS fastq reads ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF783BKL 6532700472 Michael Snyder, Stanford 7e6f0acba17ab5d3f5ba828f02e7786d SRA:SRR6213567 https://www.encodeproject.org/files/ENCFF464DYS/@@download/ENCFF464DYS.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF700ORL fastq reads ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF969XQA 4567357159 Michael Snyder, Stanford 7bf33cca23af53ef1a356decf8466096 SRA:SRR6213568 https://www.encodeproject.org/files/ENCFF700ORL/@@download/ENCFF700ORL.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF783BKL fastq reads ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF464DYS 5341625359 Michael Snyder, Stanford 0a6ece32c3e85284d873db8bcdd9f715 SRA:SRR6213567 https://www.encodeproject.org/files/ENCFF783BKL/@@download/ENCFF783BKL.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF969XQA fastq reads ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF700ORL 5282936270 Michael Snyder, Stanford dd5768cb47f130ba3bf26f5f60604bef SRA:SRR6213568 https://www.encodeproject.org/files/ENCFF969XQA/@@download/ENCFF969XQA.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF499CTM bam unfiltered alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF700ORL, ENCFF807MUK, ENCFF969XQA 9275993482 ENCODE Processing Pipeline d1491ded8d27b4a4d4ffe9a871fb09b2 https://www.encodeproject.org/files/ENCFF499CTM/@@download/ENCFF499CTM.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF786OLN bam unfiltered alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF464DYS, ENCFF783BKL, ENCFF807MUK 10962518009 ENCODE Processing Pipeline 646e7dcaceef77e7134f2d866e590b6e https://www.encodeproject.org/files/ENCFF786OLN/@@download/ENCFF786OLN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF576XQV bam unfiltered alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF464DYS, ENCFF643CGH, ENCFF783BKL 10980874847 ENCODE Processing Pipeline 8e6ea1d123bd1edf20c317b21719670c https://www.encodeproject.org/files/ENCFF576XQV/@@download/ENCFF576XQV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF645ZGF bam unfiltered alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF700ORL, ENCFF969XQA 9290770079 ENCODE Processing Pipeline def0c6eee838e982a742c4b5cc42cced https://www.encodeproject.org/files/ENCFF645ZGF/@@download/ENCFF645ZGF.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF749IJR bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF700ORL, ENCFF807MUK, ENCFF969XQA 7414683810 ENCODE Processing Pipeline ef5cbc4c655066f8409d016f716ad1c3 https://www.encodeproject.org/files/ENCFF749IJR/@@download/ENCFF749IJR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF125WGU bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF700ORL, ENCFF969XQA 7416468777 ENCODE Processing Pipeline e900821ad477f1aa76eac9da1b8dffad https://www.encodeproject.org/files/ENCFF125WGU/@@download/ENCFF125WGU.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF358VCI bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF464DYS, ENCFF783BKL, ENCFF807MUK 8758865550 ENCODE Processing Pipeline 16fe6c89d5cbbc1923dc6402cdfd7714 https://www.encodeproject.org/files/ENCFF358VCI/@@download/ENCFF358VCI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF881MAH bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF464DYS, ENCFF643CGH, ENCFF783BKL 8760651580 ENCODE Processing Pipeline f7ea73e78b3d94afffd73bee359710d4 https://www.encodeproject.org/files/ENCFF881MAH/@@download/ENCFF881MAH.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF433EVJ bigWig signal p-value ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF749IJR 1976686669 ENCODE Processing Pipeline 022e2d30ff96b2c6b4fb1626f46c16bc https://www.encodeproject.org/files/ENCFF433EVJ/@@download/ENCFF433EVJ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF760NLA bigWig signal p-value ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF125WGU, ENCFF810LLR 1982204721 ENCODE Processing Pipeline d80b5a41867c8c862a01c6456b57d335 https://www.encodeproject.org/files/ENCFF760NLA/@@download/ENCFF760NLA.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF223XXK bigWig fold change over control ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF125WGU, ENCFF810LLR, ENCFF881MAH 4191676160 ENCODE Processing Pipeline cf8bca240665b4ada1457ef274cb417a https://www.encodeproject.org/files/ENCFF223XXK/@@download/ENCFF223XXK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF840YGG bigWig fold change over control ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF125WGU, ENCFF810LLR 2078908811 ENCODE Processing Pipeline 14e225ce5bbc1ecb659f2045e2a73042 https://www.encodeproject.org/files/ENCFF840YGG/@@download/ENCFF840YGG.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF040TDS bigWig fold change over control ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF358VCI 2241552497 ENCODE Processing Pipeline 7a39e9314ddd2860c8f60189c48a8a81 https://www.encodeproject.org/files/ENCFF040TDS/@@download/ENCFF040TDS.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF828EFM bigWig fold change over control ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF358VCI, ENCFF749IJR 4183540503 ENCODE Processing Pipeline 9e4523ce4a6b3dffe2d1c1b11866fd82 https://www.encodeproject.org/files/ENCFF828EFM/@@download/ENCFF828EFM.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF055SJC bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF125WGU, ENCFF810LLR 7112663 ENCODE Processing Pipeline dec7d9a381c25cbfc3ad6e96dba7a1af https://www.encodeproject.org/files/ENCFF055SJC/@@download/ENCFF055SJC.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF056VIO bigWig signal p-value ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF810LLR, ENCFF881MAH 1915642569 ENCODE Processing Pipeline bf22b30d9f66b73e91c4b74a45fe2ee0 https://www.encodeproject.org/files/ENCFF056VIO/@@download/ENCFF056VIO.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF162QVD bigWig signal p-value ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF358VCI 1921596361 ENCODE Processing Pipeline 240253106fc61c9da7d2b539e8bfdc28 https://www.encodeproject.org/files/ENCFF162QVD/@@download/ENCFF162QVD.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF559WGK bigWig signal p-value ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF125WGU, ENCFF810LLR, ENCFF881MAH 1876710607 ENCODE Processing Pipeline 8871d5965fb91f0ca620a8ba11a29889 https://www.encodeproject.org/files/ENCFF559WGK/@@download/ENCFF559WGK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF484ZZM bigWig signal p-value ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF358VCI, ENCFF749IJR 1874773234 ENCODE Processing Pipeline aa6db02fd493af42865bef3f101f0950 https://www.encodeproject.org/files/ENCFF484ZZM/@@download/ENCFF484ZZM.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF593BPX bigWig fold change over control ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF749IJR 2070451505 ENCODE Processing Pipeline d56c789f5d676b9dd3818efd74acb01f https://www.encodeproject.org/files/ENCFF593BPX/@@download/ENCFF593BPX.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF188VUY bigBed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF607TIV 11099120 ENCODE Processing Pipeline 1acb94aacfa3128638cb5831da266db0 https://www.encodeproject.org/files/ENCFF188VUY/@@download/ENCFF188VUY.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF924JMH bed narrowPeak optimal idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF055SJC, ENCFF419RSJ, ENCFF554JHS, ENCFF607TIV 36246 ENCODE Processing Pipeline ebfea90d12759788fef84de08f51b498 https://www.encodeproject.org/files/ENCFF924JMH/@@download/ENCFF924JMH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF417WLF bigBed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF084ORS 11289791 ENCODE Processing Pipeline f1d4648a60af82eaa7a09604ae7a5cc5 https://www.encodeproject.org/files/ENCFF417WLF/@@download/ENCFF417WLF.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF366UMH bed narrowPeak conservative idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF055SJC, ENCFF419RSJ, ENCFF554JHS, ENCFF607TIV 20551 ENCODE Processing Pipeline 48a9e9f1b90d8ac50794c21bbd65798a https://www.encodeproject.org/files/ENCFF366UMH/@@download/ENCFF366UMH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF471IMS bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF358VCI 7279418 ENCODE Processing Pipeline 8162de62da9eff517fa138fdb1983ec8 https://www.encodeproject.org/files/ENCFF471IMS/@@download/ENCFF471IMS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF596GIB bigWig fold change over control ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF810LLR, ENCFF881MAH 2229363134 ENCODE Processing Pipeline 1818b257e326de905fdc70b24a36abfc https://www.encodeproject.org/files/ENCFF596GIB/@@download/ENCFF596GIB.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF554JHS bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF810LLR, ENCFF881MAH 7283270 ENCODE Processing Pipeline 86f26e1c9cb2a43465529d63abb3ba8f https://www.encodeproject.org/files/ENCFF554JHS/@@download/ENCFF554JHS.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF607TIV bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF125WGU, ENCFF810LLR, ENCFF881MAH 7304682 ENCODE Processing Pipeline ca3cff7af5b68a6c22b212b632f888ee https://www.encodeproject.org/files/ENCFF607TIV/@@download/ENCFF607TIV.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF505LAY bigBed narrowPeak optimal idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF924JMH 108952 ENCODE Processing Pipeline f24a9cdb041d29393cb21ff9e145a369 https://www.encodeproject.org/files/ENCFF505LAY/@@download/ENCFF505LAY.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF342EPY bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF358VCI, ENCFF749IJR 7302627 ENCODE Processing Pipeline 4200225bdcb202c9e8f76031f3666092 https://www.encodeproject.org/files/ENCFF342EPY/@@download/ENCFF342EPY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF495OQJ bigBed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF471IMS 11266890 ENCODE Processing Pipeline 216c567e1360915c5e345ff1c53a4502 https://www.encodeproject.org/files/ENCFF495OQJ/@@download/ENCFF495OQJ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF856BRQ bigBed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF554JHS 11281301 ENCODE Processing Pipeline f6ff2236e090f7c3a5b041aa92f7795d https://www.encodeproject.org/files/ENCFF856BRQ/@@download/ENCFF856BRQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF622FRU bigBed narrowPeak conservative idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF366UMH 85740 ENCODE Processing Pipeline e23385a4e1b2e7c8219326a02c561156 https://www.encodeproject.org/files/ENCFF622FRU/@@download/ENCFF622FRU.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF084ORS bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF749IJR 7112602 ENCODE Processing Pipeline 87bb642733e4f3fd7106a79818fbb3ce https://www.encodeproject.org/files/ENCFF084ORS/@@download/ENCFF084ORS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF071WGD bigBed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF342EPY 13246293 ENCODE Processing Pipeline 75a4f58d324bb503e9f6e74525acfe6c https://www.encodeproject.org/files/ENCFF071WGD/@@download/ENCFF071WGD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF104TEY bigBed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF055SJC 11302615 ENCODE Processing Pipeline a668cd6ad1b77cf7524a223432c22194 https://www.encodeproject.org/files/ENCFF104TEY/@@download/ENCFF104TEY.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF345YWP bed narrowPeak conservative idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF084ORS, ENCFF342EPY, ENCFF471IMS 21393 ENCODE Processing Pipeline 1ac4e0cdbe1304cb88dd30c64fb65a46 https://www.encodeproject.org/files/ENCFF345YWP/@@download/ENCFF345YWP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF768EYB bed narrowPeak optimal idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF084ORS, ENCFF342EPY, ENCFF471IMS 38728 ENCODE Processing Pipeline 72a1d6dc8b0f77aba1d1ee7a2affa021 https://www.encodeproject.org/files/ENCFF768EYB/@@download/ENCFF768EYB.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF465KME bigBed narrowPeak conservative idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF345YWP 86549 ENCODE Processing Pipeline a57d7c93bdc5ebc7fa3c8a00ea8ce34f https://www.encodeproject.org/files/ENCFF465KME/@@download/ENCFF465KME.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF730ROG bigBed narrowPeak optimal idr thresholded peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF768EYB 112045 ENCODE Processing Pipeline 5f66cc3e1f1900594d27abc746aaab63 https://www.encodeproject.org/files/ENCFF730ROG/@@download/ENCFF730ROG.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF107PYI bam unfiltered alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 50 ENCFF395ENN, ENCFF633GWT, ENCFF807MUK 1469314995 ENCODE Processing Pipeline 23e7295d164f51bf07558e555db5f886 https://www.encodeproject.org/files/ENCFF107PYI/@@download/ENCFF107PYI.bam hg19 released missing genetic modification characterization ENCFF500YIU bam unfiltered alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 50 ENCFF384QMY, ENCFF807MUK, ENCFF903EIQ 1190017128 ENCODE Processing Pipeline 74677ccc1d4ea98b5cefcd0b1514aa5d https://www.encodeproject.org/files/ENCFF500YIU/@@download/ENCFF500YIU.bam hg19 released missing genetic modification characterization ENCFF384QMY fastq reads ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 551147750 Kevin White, UChicago fd0cc1c9350b278d35ff833a5129ca18 SRA:SRR6213942 https://www.encodeproject.org/files/ENCFF384QMY/@@download/ENCFF384QMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF043SJU/, /files/ENCFF268CSZ/ released missing genetic modification characterization ENCFF633GWT fastq reads ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 696464395 Kevin White, UChicago bfdf9cd4f6470cc065f1e6a06f68f88b SRA:SRR6213944 https://www.encodeproject.org/files/ENCFF633GWT/@@download/ENCFF633GWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF043SJU/, /files/ENCFF268CSZ/ released missing genetic modification characterization ENCFF903EIQ fastq reads ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 555246508 Kevin White, UChicago 443c5253814ad3a2d2eb2ef66f735fc6 SRA:SRR6213943 https://www.encodeproject.org/files/ENCFF903EIQ/@@download/ENCFF903EIQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF043SJU/, /files/ENCFF268CSZ/ released missing genetic modification characterization ENCFF395ENN fastq reads ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 682621126 Kevin White, UChicago b63cf250434f4c66add00d32397fb799 SRA:SRR6213945 https://www.encodeproject.org/files/ENCFF395ENN/@@download/ENCFF395ENN.fastq.gz Illumina HiSeq 2500 /files/ENCFF043SJU/, /files/ENCFF268CSZ/ released missing genetic modification characterization ENCFF938KSJ bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 50 ENCFF384QMY, ENCFF807MUK, ENCFF903EIQ 898063435 ENCODE Processing Pipeline ee965755ed5c75600ca2b650ccfb2e93 https://www.encodeproject.org/files/ENCFF938KSJ/@@download/ENCFF938KSJ.bam hg19 released missing genetic modification characterization ENCFF642OQJ bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 50 ENCFF395ENN, ENCFF633GWT, ENCFF807MUK 1108681140 ENCODE Processing Pipeline ff5f766c0f696fb3986adc9246165a80 https://www.encodeproject.org/files/ENCFF642OQJ/@@download/ENCFF642OQJ.bam hg19 released missing genetic modification characterization ENCFF554YSA bigWig signal p-value ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF642OQJ, ENCFF831FLE, ENCFF938KSJ 750299474 ENCODE Processing Pipeline f6c86eaee23515d3a48c497d93f6d567 https://www.encodeproject.org/files/ENCFF554YSA/@@download/ENCFF554YSA.bigWig hg19 released missing genetic modification characterization ENCFF348YZD bigWig signal p-value ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF831FLE, ENCFF938KSJ 566430685 ENCODE Processing Pipeline 21479cc01b4a7ada5d28eea797ff183f https://www.encodeproject.org/files/ENCFF348YZD/@@download/ENCFF348YZD.bigWig hg19 released missing genetic modification characterization ENCFF985KZR bigWig fold change over control ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF831FLE, ENCFF938KSJ 532872878 ENCODE Processing Pipeline 373ed8cf92936ec272fd3770ec80a097 https://www.encodeproject.org/files/ENCFF985KZR/@@download/ENCFF985KZR.bigWig hg19 released missing genetic modification characterization ENCFF300ZPK bigWig signal p-value ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF642OQJ, ENCFF831FLE 640376232 ENCODE Processing Pipeline 2f00a0ff533074c39e0009fad4be8f9c https://www.encodeproject.org/files/ENCFF300ZPK/@@download/ENCFF300ZPK.bigWig hg19 released missing genetic modification characterization ENCFF606WVG bigWig fold change over control ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF642OQJ, ENCFF831FLE 609729806 ENCODE Processing Pipeline 780aa3fc96fd52c17175cc8b49fba0ba https://www.encodeproject.org/files/ENCFF606WVG/@@download/ENCFF606WVG.bigWig hg19 released missing genetic modification characterization ENCFF360GCE bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF642OQJ, ENCFF831FLE 6900000 ENCODE Processing Pipeline 17198703d90150d4dc8dd66cdc74f495 https://www.encodeproject.org/files/ENCFF360GCE/@@download/ENCFF360GCE.bed.gz hg19 released missing genetic modification characterization ENCFF672OUR bigWig fold change over control ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF642OQJ, ENCFF831FLE, ENCFF938KSJ 882149372 ENCODE Processing Pipeline 3375de99cd191a9e9e0e8105fdae22c8 https://www.encodeproject.org/files/ENCFF672OUR/@@download/ENCFF672OUR.bigWig hg19 released missing genetic modification characterization ENCFF118EXB bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF831FLE, ENCFF938KSJ 6685960 ENCODE Processing Pipeline 80b3bb1da20547a692d75886b0ce8f51 https://www.encodeproject.org/files/ENCFF118EXB/@@download/ENCFF118EXB.bed.gz hg19 released missing genetic modification characterization ENCFF321FDW bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF642OQJ, ENCFF831FLE, ENCFF938KSJ 7157256 ENCODE Processing Pipeline f409e3573e9634709e8bc3a394e46f13 https://www.encodeproject.org/files/ENCFF321FDW/@@download/ENCFF321FDW.bed.gz hg19 released missing genetic modification characterization ENCFF425TIX bigBed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF118EXB 12836804 ENCODE Processing Pipeline 3632240115a6dacbe2822694a4476d90 https://www.encodeproject.org/files/ENCFF425TIX/@@download/ENCFF425TIX.bigBed hg19 released missing genetic modification characterization ENCFF772VCR bigBed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF321FDW 12712739 ENCODE Processing Pipeline 924dad735f6c0836c9e8d138330560f7 https://www.encodeproject.org/files/ENCFF772VCR/@@download/ENCFF772VCR.bigBed hg19 released missing genetic modification characterization ENCFF192XXU bigBed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF360GCE 12806764 ENCODE Processing Pipeline 0d64035560e151304594737f865012bf https://www.encodeproject.org/files/ENCFF192XXU/@@download/ENCFF192XXU.bigBed hg19 released missing genetic modification characterization ENCFF141IWK bam unfiltered alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 50 ENCFF384QMY, ENCFF643CGH, ENCFF903EIQ 1193206239 ENCODE Processing Pipeline b2688ef1ec44386536eaef088823bbf1 https://www.encodeproject.org/files/ENCFF141IWK/@@download/ENCFF141IWK.bam GRCh38 released missing genetic modification characterization ENCFF597NPX bam unfiltered alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 50 ENCFF395ENN, ENCFF633GWT, ENCFF643CGH 1473332464 ENCODE Processing Pipeline dc744da6e2c8b94282e56d89cb690462 https://www.encodeproject.org/files/ENCFF597NPX/@@download/ENCFF597NPX.bam GRCh38 released missing genetic modification characterization ENCFF980YNA bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 50 ENCFF384QMY, ENCFF643CGH, ENCFF903EIQ 897427953 ENCODE Processing Pipeline 0a8f3fb2c56241f5a823f48881f3d732 https://www.encodeproject.org/files/ENCFF980YNA/@@download/ENCFF980YNA.bam GRCh38 released missing genetic modification characterization ENCFF564FBJ bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 50 ENCFF395ENN, ENCFF633GWT, ENCFF643CGH 1107993140 ENCODE Processing Pipeline 3b7c352c7bc811507cabe173b6b2aefe https://www.encodeproject.org/files/ENCFF564FBJ/@@download/ENCFF564FBJ.bam GRCh38 released missing genetic modification characterization ENCFF082YHP bigWig signal p-value ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF564FBJ, ENCFF967YTY 646219112 ENCODE Processing Pipeline 0e597f4d057440a4115c48d38726e949 https://www.encodeproject.org/files/ENCFF082YHP/@@download/ENCFF082YHP.bigWig GRCh38 released missing genetic modification characterization ENCFF149BCZ bigWig signal p-value ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF967YTY, ENCFF980YNA 514246274 ENCODE Processing Pipeline ece71b7502f782ba6671e9a6fc7d60dd https://www.encodeproject.org/files/ENCFF149BCZ/@@download/ENCFF149BCZ.bigWig GRCh38 released missing genetic modification characterization ENCFF564NGI bigWig fold change over control ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF967YTY, ENCFF980YNA 522315907 ENCODE Processing Pipeline 05389dd64cadf017b927bf15c54bda6e https://www.encodeproject.org/files/ENCFF564NGI/@@download/ENCFF564NGI.bigWig GRCh38 released missing genetic modification characterization ENCFF211UMN bigWig signal p-value ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF564FBJ, ENCFF967YTY, ENCFF980YNA 749998654 ENCODE Processing Pipeline cdec9994202401cb7224f2684a9e45d0 https://www.encodeproject.org/files/ENCFF211UMN/@@download/ENCFF211UMN.bigWig GRCh38 released missing genetic modification characterization ENCFF423SUS bigWig fold change over control ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF564FBJ, ENCFF967YTY 610038420 ENCODE Processing Pipeline e7aa42f821232a70d25906451e21961b https://www.encodeproject.org/files/ENCFF423SUS/@@download/ENCFF423SUS.bigWig GRCh38 released missing genetic modification characterization ENCFF740EXI bigWig fold change over control ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF564FBJ, ENCFF967YTY, ENCFF980YNA 880436277 ENCODE Processing Pipeline 673ea32f51b0c1c6db52b59e08cad983 https://www.encodeproject.org/files/ENCFF740EXI/@@download/ENCFF740EXI.bigWig GRCh38 released missing genetic modification characterization ENCFF999QIF bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF967YTY, ENCFF980YNA 6536463 ENCODE Processing Pipeline 4b14944dc1e84d9470f143200eb803c7 https://www.encodeproject.org/files/ENCFF999QIF/@@download/ENCFF999QIF.bed.gz GRCh38 released missing genetic modification characterization ENCFF998EXR bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF564FBJ, ENCFF967YTY 6737883 ENCODE Processing Pipeline 62d54a894a5bf98f85504ae4e798dad5 https://www.encodeproject.org/files/ENCFF998EXR/@@download/ENCFF998EXR.bed.gz GRCh38 released missing genetic modification characterization ENCFF899QEM bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF564FBJ, ENCFF967YTY, ENCFF980YNA 7067249 ENCODE Processing Pipeline 7668d8140d47eba717f0225731632a00 https://www.encodeproject.org/files/ENCFF899QEM/@@download/ENCFF899QEM.bed.gz GRCh38 released missing genetic modification characterization ENCFF929OPJ bigBed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF999QIF 12836842 ENCODE Processing Pipeline 5223ed4b714f17dfa935dced6f95745a https://www.encodeproject.org/files/ENCFF929OPJ/@@download/ENCFF929OPJ.bigBed GRCh38 released missing genetic modification characterization ENCFF468VJV bed narrowPeak optimal idr thresholded peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF899QEM, ENCFF998EXR, ENCFF999QIF 357604 ENCODE Processing Pipeline 25e42b68b18ed0ff950932ea3644dab0 https://www.encodeproject.org/files/ENCFF468VJV/@@download/ENCFF468VJV.bed.gz GRCh38 released missing genetic modification characterization ENCFF232FSG bigBed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF998EXR 12780017 ENCODE Processing Pipeline f4243aa1feb7aa2c070cb1bc9201d2b9 https://www.encodeproject.org/files/ENCFF232FSG/@@download/ENCFF232FSG.bigBed GRCh38 released missing genetic modification characterization ENCFF897CLD bigBed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF899QEM 12726123 ENCODE Processing Pipeline 3d8d0e11169cacf49c29a8afdf89caa2 https://www.encodeproject.org/files/ENCFF897CLD/@@download/ENCFF897CLD.bigBed GRCh38 released missing genetic modification characterization ENCFF339VDX bigBed narrowPeak optimal idr thresholded peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF468VJV 813988 ENCODE Processing Pipeline 74891e094961cfa46e65bb09de06b8e9 https://www.encodeproject.org/files/ENCFF339VDX/@@download/ENCFF339VDX.bigBed GRCh38 released missing genetic modification characterization ENCFF178POI bigBed narrowPeak optimal idr thresholded peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF356ASJ 595227 ENCODE Processing Pipeline 19ac2ab019b78031de0a19cb137f8dc0 https://www.encodeproject.org/files/ENCFF178POI/@@download/ENCFF178POI.bigBed hg19 released missing genetic modification characterization ENCFF356ASJ bed narrowPeak optimal idr thresholded peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF118EXB, ENCFF321FDW, ENCFF360GCE 299967 ENCODE Processing Pipeline 85a7606ad879c0327dc0b15b3eec8947 https://www.encodeproject.org/files/ENCFF356ASJ/@@download/ENCFF356ASJ.bed.gz hg19 released missing genetic modification characterization ENCFF504ZSA fastq reads ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF329ZRM 2737279461 Michael Snyder, Stanford 7438f8a1c19816da1b515f892d6f1247 https://www.encodeproject.org/files/ENCFF504ZSA/@@download/ENCFF504ZSA.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released experiment not submitted to GEO partially characterized antibody ENCFF402INY fastq reads ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF340IWG 2105327071 Michael Snyder, Stanford 9d82e1a77195d3a555a4dd3c387aeb53 https://www.encodeproject.org/files/ENCFF402INY/@@download/ENCFF402INY.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released experiment not submitted to GEO partially characterized antibody ENCFF340IWG fastq reads ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF402INY 2141895456 Michael Snyder, Stanford c4ef22542847c3c80540465e7d81cfaa https://www.encodeproject.org/files/ENCFF340IWG/@@download/ENCFF340IWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released experiment not submitted to GEO partially characterized antibody ENCFF329ZRM fastq reads ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF504ZSA 2703185866 Michael Snyder, Stanford 0837f144bc8433af6cbee2ffdbbe58d5 https://www.encodeproject.org/files/ENCFF329ZRM/@@download/ENCFF329ZRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released experiment not submitted to GEO partially characterized antibody ENCFF168IPB bam unfiltered alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF340IWG, ENCFF402INY, ENCFF643CGH 4680229537 ENCODE Processing Pipeline 5088abcd2401a7a0cb1e8c8e7d666995 https://www.encodeproject.org/files/ENCFF168IPB/@@download/ENCFF168IPB.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF789JOU bam unfiltered alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF329ZRM, ENCFF504ZSA, ENCFF807MUK 5847938045 ENCODE Processing Pipeline ebdb0454684b8cac11508997d0aa2f82 https://www.encodeproject.org/files/ENCFF789JOU/@@download/ENCFF789JOU.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF563MIC bam unfiltered alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF340IWG, ENCFF402INY, ENCFF807MUK 4675671974 ENCODE Processing Pipeline 8698ef4c0425504848014e45cde675d9 https://www.encodeproject.org/files/ENCFF563MIC/@@download/ENCFF563MIC.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF014CPX bam unfiltered alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF329ZRM, ENCFF504ZSA, ENCFF643CGH 5852962716 ENCODE Processing Pipeline 498eafae69926946ce539c9019eb0a91 https://www.encodeproject.org/files/ENCFF014CPX/@@download/ENCFF014CPX.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF636ICA bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF340IWG, ENCFF402INY, ENCFF807MUK 3982115129 ENCODE Processing Pipeline b152e7dfa6411a1cfce94041cfdeed55 https://www.encodeproject.org/files/ENCFF636ICA/@@download/ENCFF636ICA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF521MLQ bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF340IWG, ENCFF402INY, ENCFF643CGH 3984373690 ENCODE Processing Pipeline ca1e3cc68633fb27cf765a3ca114a3c1 https://www.encodeproject.org/files/ENCFF521MLQ/@@download/ENCFF521MLQ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF764RCL bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF329ZRM, ENCFF504ZSA, ENCFF807MUK 4781370417 ENCODE Processing Pipeline 745dc29075624e53f39062ed4e97744e https://www.encodeproject.org/files/ENCFF764RCL/@@download/ENCFF764RCL.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF804JSK bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF329ZRM, ENCFF504ZSA, ENCFF643CGH 4783866131 ENCODE Processing Pipeline 13bba08f5d3efae182df31f692a70bc7 https://www.encodeproject.org/files/ENCFF804JSK/@@download/ENCFF804JSK.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF672VKU bigWig fold change over control ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF764RCL 1372536780 ENCODE Processing Pipeline 3d1957235ddb2019e82bbbb726910df1 https://www.encodeproject.org/files/ENCFF672VKU/@@download/ENCFF672VKU.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF527SRP bigWig fold change over control ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA 1234951661 ENCODE Processing Pipeline 41ae791050c4babbf79debccb869fb50 https://www.encodeproject.org/files/ENCFF527SRP/@@download/ENCFF527SRP.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF321YLF bigWig signal p-value ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA, ENCFF764RCL 1368067688 ENCODE Processing Pipeline a34af8024af9bc449eb8b7c0c2f37ac5 https://www.encodeproject.org/files/ENCFF321YLF/@@download/ENCFF321YLF.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF086FIO bigBed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF367IRL 11351002 ENCODE Processing Pipeline d61e0cd35c952d8a5a1fe776838c596a https://www.encodeproject.org/files/ENCFF086FIO/@@download/ENCFF086FIO.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF123GAX bigBed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF876GAB 13333227 ENCODE Processing Pipeline f07a419e76e8d18440ad03b341a39369 https://www.encodeproject.org/files/ENCFF123GAX/@@download/ENCFF123GAX.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF526HLP bed narrowPeak optimal idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF218RDF, ENCFF367IRL, ENCFF876GAB 350462 ENCODE Processing Pipeline d0c60d91b1a0ec1fd66b2497426f4642 https://www.encodeproject.org/files/ENCFF526HLP/@@download/ENCFF526HLP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF876GAB bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA, ENCFF764RCL 7139116 ENCODE Processing Pipeline 6cc214c7e617c45b6d61e88d87a5bd2d https://www.encodeproject.org/files/ENCFF876GAB/@@download/ENCFF876GAB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF709HXG bigBed narrowPeak conservative idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF318UQW 554596 ENCODE Processing Pipeline 7901a54e8c5743b76ccb0d3bce33200c https://www.encodeproject.org/files/ENCFF709HXG/@@download/ENCFF709HXG.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF279QVH bigBed narrowPeak optimal idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF526HLP 635227 ENCODE Processing Pipeline 00cf58a5483e13d8cb157f28839bb08a https://www.encodeproject.org/files/ENCFF279QVH/@@download/ENCFF279QVH.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF722VVM bigWig signal p-value ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF764RCL 1397345103 ENCODE Processing Pipeline db2eb938c4ade2c249cb6a9629f0e41c https://www.encodeproject.org/files/ENCFF722VVM/@@download/ENCFF722VVM.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF620DCM bigWig fold change over control ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA, ENCFF764RCL 1864692181 ENCODE Processing Pipeline f68d6dbd69699bef0d478040830c5a46 https://www.encodeproject.org/files/ENCFF620DCM/@@download/ENCFF620DCM.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF318UQW bed narrowPeak conservative idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF218RDF, ENCFF367IRL, ENCFF876GAB 290873 ENCODE Processing Pipeline ef998fad3e34ae81db0c3e4e02cb66f7 https://www.encodeproject.org/files/ENCFF318UQW/@@download/ENCFF318UQW.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF738UEL bigWig signal p-value ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA 1258027531 ENCODE Processing Pipeline 3e26a61146f023fa62bbe94672fe4ba6 https://www.encodeproject.org/files/ENCFF738UEL/@@download/ENCFF738UEL.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF218RDF bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA 6693826 ENCODE Processing Pipeline c2da8aa63a5dc6c33fc1f4bf1f310dd1 https://www.encodeproject.org/files/ENCFF218RDF/@@download/ENCFF218RDF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF367IRL bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF764RCL 6638894 ENCODE Processing Pipeline 667ca9cb6a3cab61aeecbef471fef6e8 https://www.encodeproject.org/files/ENCFF367IRL/@@download/ENCFF367IRL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF989OWQ bigBed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF218RDF 13423332 ENCODE Processing Pipeline 8d5e183fa31bec9ae65362b3f9a957ae https://www.encodeproject.org/files/ENCFF989OWQ/@@download/ENCFF989OWQ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF662POB bigWig signal p-value ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF720AUK, ENCFF796JTX, ENCFF804JSK 1282238889 ENCODE Processing Pipeline 06e4e8a560725120d36230fe81f20925 https://www.encodeproject.org/files/ENCFF662POB/@@download/ENCFF662POB.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF408NGC bigWig fold change over control ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF720AUK, ENCFF796JTX, ENCFF804JSK 1376147988 ENCODE Processing Pipeline 7c18fc24433f7cb5429903e56a404a20 https://www.encodeproject.org/files/ENCFF408NGC/@@download/ENCFF408NGC.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF994LPG bigWig signal p-value ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF521MLQ, ENCFF720AUK, ENCFF796JTX 1236241539 ENCODE Processing Pipeline 437707bdcde90f7d810bbc95671f91b7 https://www.encodeproject.org/files/ENCFF994LPG/@@download/ENCFF994LPG.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF416WZD bigWig fold change over control ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF521MLQ, ENCFF720AUK, ENCFF796JTX 1235132233 ENCODE Processing Pipeline 14dc2f08f8ae21faa052aa3f45ff33af https://www.encodeproject.org/files/ENCFF416WZD/@@download/ENCFF416WZD.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF226ZWP bigWig fold change over control ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF521MLQ, ENCFF720AUK, ENCFF796JTX, ENCFF804JSK 1866974899 ENCODE Processing Pipeline 79179c4092e427f724384d92ca6a5c19 https://www.encodeproject.org/files/ENCFF226ZWP/@@download/ENCFF226ZWP.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF864QQC bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF521MLQ, ENCFF720AUK, ENCFF796JTX, ENCFF804JSK 7147928 ENCODE Processing Pipeline 26e5c4cbf109522b06f80550d3d302ac https://www.encodeproject.org/files/ENCFF864QQC/@@download/ENCFF864QQC.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF326QUT bed narrowPeak conservative idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF512HJR, ENCFF818IZF, ENCFF864QQC 293516 ENCODE Processing Pipeline a9e8decefa1bc7c9b533808ed9f1f55a https://www.encodeproject.org/files/ENCFF326QUT/@@download/ENCFF326QUT.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF870LJV bed narrowPeak optimal idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF512HJR, ENCFF818IZF, ENCFF864QQC 357631 ENCODE Processing Pipeline cc4bdc7c6047ac7deb40b54f6df8604d https://www.encodeproject.org/files/ENCFF870LJV/@@download/ENCFF870LJV.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF818IZF bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF521MLQ, ENCFF720AUK, ENCFF796JTX 6698476 ENCODE Processing Pipeline 52ea7b551cc50d07fc4679b891cade80 https://www.encodeproject.org/files/ENCFF818IZF/@@download/ENCFF818IZF.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF622OSN bigBed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF818IZF 13438153 ENCODE Processing Pipeline a4f8f59ef9b659e866de8a3bb60e6c55 https://www.encodeproject.org/files/ENCFF622OSN/@@download/ENCFF622OSN.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF507YBV bigWig signal p-value ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF521MLQ, ENCFF720AUK, ENCFF796JTX, ENCFF804JSK 1469102007 ENCODE Processing Pipeline 5650374b22c82aacf8c00b144002699d https://www.encodeproject.org/files/ENCFF507YBV/@@download/ENCFF507YBV.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF330AWE bigBed narrowPeak conservative idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF326QUT 560004 ENCODE Processing Pipeline 547ff1af38b86725aa1987093e25d2cb https://www.encodeproject.org/files/ENCFF330AWE/@@download/ENCFF330AWE.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF055GXR bigBed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF864QQC 13348043 ENCODE Processing Pipeline 60f061c920322584e8e70f1d0e38672f https://www.encodeproject.org/files/ENCFF055GXR/@@download/ENCFF055GXR.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF512HJR bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF720AUK, ENCFF796JTX, ENCFF804JSK 6647442 ENCODE Processing Pipeline 41d06797cd96fd2164538caf51a91554 https://www.encodeproject.org/files/ENCFF512HJR/@@download/ENCFF512HJR.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF119CMI bigBed narrowPeak optimal idr thresholded peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF870LJV 646364 ENCODE Processing Pipeline ee8cad0a3dae50ed32464a4c7bfd212e https://www.encodeproject.org/files/ENCFF119CMI/@@download/ENCFF119CMI.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF173GSO bigBed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF512HJR 11370410 ENCODE Processing Pipeline ba483ce51275e094bbe548d4a12348c5 https://www.encodeproject.org/files/ENCFF173GSO/@@download/ENCFF173GSO.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF382JTY bam unfiltered alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF597HDK, ENCFF807MUK, ENCFF992IHE 4201507330 ENCODE Processing Pipeline 58f06261a4c0d230605021983072fdaf https://www.encodeproject.org/files/ENCFF382JTY/@@download/ENCFF382JTY.bam hg19 released low read depth, missing genetic modification characterization ENCFF615ORE bam unfiltered alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF382BWE, ENCFF807MUK, ENCFF943GMA 4127127266 ENCODE Processing Pipeline 7a82ffe7bace844edf2139f56ee783c3 https://www.encodeproject.org/files/ENCFF615ORE/@@download/ENCFF615ORE.bam hg19 released low read depth, missing genetic modification characterization ENCFF992IHE fastq reads ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF597HDK 1902156161 Michael Snyder, Stanford 0b42faf2d2a2481f49be5579244589ee SRA:SRR5111196 https://www.encodeproject.org/files/ENCFF992IHE/@@download/ENCFF992IHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF729LDU/ released low read depth, missing genetic modification characterization ENCFF597HDK fastq reads ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF992IHE 1789316868 Michael Snyder, Stanford 0699a8e2a8e27d6fa9e99ec220a3ec0f SRA:SRR5111196 https://www.encodeproject.org/files/ENCFF597HDK/@@download/ENCFF597HDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF795ITH/ released low read depth, missing genetic modification characterization ENCFF943GMA fastq reads ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF382BWE 1904449063 Michael Snyder, Stanford 6700b16e4a42ac7d76f0af239c295f85 SRA:SRR5111197 https://www.encodeproject.org/files/ENCFF943GMA/@@download/ENCFF943GMA.fastq.gz Illumina HiSeq 2000 /files/ENCFF729LDU/ released low read depth, missing genetic modification characterization ENCFF382BWE fastq reads ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF943GMA 1823939470 Michael Snyder, Stanford 776ee9bbb56b9691a1da96547e724391 SRA:SRR5111197 https://www.encodeproject.org/files/ENCFF382BWE/@@download/ENCFF382BWE.fastq.gz Illumina HiSeq 2000 /files/ENCFF795ITH/ released low read depth, missing genetic modification characterization ENCFF013WTE bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF597HDK, ENCFF807MUK, ENCFF992IHE 2969152143 ENCODE Processing Pipeline ae8ad145aaa8f163c24d56c510e30ef8 https://www.encodeproject.org/files/ENCFF013WTE/@@download/ENCFF013WTE.bam hg19 released low read depth, missing genetic modification characterization ENCFF845UEU bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF382BWE, ENCFF807MUK, ENCFF943GMA 3334855232 ENCODE Processing Pipeline 79c762b616784416edae1094518e8a50 https://www.encodeproject.org/files/ENCFF845UEU/@@download/ENCFF845UEU.bam hg19 released low read depth, missing genetic modification characterization ENCFF895TBN bigWig signal p-value ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF496ANK, ENCFF845UEU 900031073 ENCODE Processing Pipeline 67a144fdd5f44039c0fe24ea7d316484 https://www.encodeproject.org/files/ENCFF895TBN/@@download/ENCFF895TBN.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF334LQA bigWig signal p-value ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF013WTE, ENCFF496ANK 875646095 ENCODE Processing Pipeline 7ccbf4cd478fe6d45eeac4770cf8d7bd https://www.encodeproject.org/files/ENCFF334LQA/@@download/ENCFF334LQA.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF013ENY bigWig signal p-value ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF013WTE, ENCFF496ANK, ENCFF845UEU 1168039850 ENCODE Processing Pipeline 47656ffab12bbfcba7dfd26bb5aa2648 https://www.encodeproject.org/files/ENCFF013ENY/@@download/ENCFF013ENY.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF842TXD bigWig fold change over control ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF496ANK, ENCFF845UEU 880592797 ENCODE Processing Pipeline d2f8e99b93914d69a3fe761d2b4a6db7 https://www.encodeproject.org/files/ENCFF842TXD/@@download/ENCFF842TXD.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF812XFL bigWig fold change over control ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF013WTE, ENCFF496ANK 803573096 ENCODE Processing Pipeline 6dec8e0df6859f321ae263be7a2ae23b https://www.encodeproject.org/files/ENCFF812XFL/@@download/ENCFF812XFL.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF780XYT bigWig fold change over control ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF013WTE, ENCFF496ANK, ENCFF845UEU 1280071467 ENCODE Processing Pipeline af5f67cf3c8e082bc2cddf314058f8c9 https://www.encodeproject.org/files/ENCFF780XYT/@@download/ENCFF780XYT.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF377KNC bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF496ANK, ENCFF845UEU 6391584 ENCODE Processing Pipeline 8c8e547d257945af136b6f2be70dec7e https://www.encodeproject.org/files/ENCFF377KNC/@@download/ENCFF377KNC.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF307MIA bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF013WTE, ENCFF496ANK 6173968 ENCODE Processing Pipeline 15113e25626fbfbdb4bc89e7b87c6637 https://www.encodeproject.org/files/ENCFF307MIA/@@download/ENCFF307MIA.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF335CLS bigBed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF816UNQ 13129994 ENCODE Processing Pipeline 79329b7e7579c64c265f43115020b1e0 https://www.encodeproject.org/files/ENCFF335CLS/@@download/ENCFF335CLS.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF816UNQ bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF013WTE, ENCFF496ANK, ENCFF845UEU 7019159 ENCODE Processing Pipeline 882189324763d320649004f168a954b8 https://www.encodeproject.org/files/ENCFF816UNQ/@@download/ENCFF816UNQ.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF467RPG bigBed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF377KNC 13328931 ENCODE Processing Pipeline f7bd9e066d79f337a36620652014c711 https://www.encodeproject.org/files/ENCFF467RPG/@@download/ENCFF467RPG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF882ZBR bigBed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF307MIA 13308239 ENCODE Processing Pipeline c28f537d537265a6ebe3cb4b11a005c4 https://www.encodeproject.org/files/ENCFF882ZBR/@@download/ENCFF882ZBR.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF518PFA bam unfiltered alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF382BWE, ENCFF643CGH, ENCFF943GMA 4133114544 ENCODE Processing Pipeline b4397f334b9ff81b2e8cf24cc2d1b2ef https://www.encodeproject.org/files/ENCFF518PFA/@@download/ENCFF518PFA.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF937GJL bam unfiltered alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF597HDK, ENCFF643CGH, ENCFF992IHE 4210133988 ENCODE Processing Pipeline 9fb7c0535fa9640adcf018c7b67da088 https://www.encodeproject.org/files/ENCFF937GJL/@@download/ENCFF937GJL.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF384DMV bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF597HDK, ENCFF643CGH, ENCFF992IHE 2971337301 ENCODE Processing Pipeline f0ef5a211065d1aaab028502ce72c1c0 https://www.encodeproject.org/files/ENCFF384DMV/@@download/ENCFF384DMV.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF730MAX bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF382BWE, ENCFF643CGH, ENCFF943GMA 3336769898 ENCODE Processing Pipeline 200da345b440cd9911130b525aa562e1 https://www.encodeproject.org/files/ENCFF730MAX/@@download/ENCFF730MAX.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF862QEE bigWig signal p-value ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF647OZY, ENCFF730MAX 781610022 ENCODE Processing Pipeline 3cfb6e88288a1e1095b333569240bca3 https://www.encodeproject.org/files/ENCFF862QEE/@@download/ENCFF862QEE.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF684BTP bigWig signal p-value ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF384DMV, ENCFF647OZY 909180625 ENCODE Processing Pipeline e105991d6c46cb47c8fe13edc4312ec4 https://www.encodeproject.org/files/ENCFF684BTP/@@download/ENCFF684BTP.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF942MAF bigWig signal p-value ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF384DMV, ENCFF647OZY, ENCFF730MAX 1170573680 ENCODE Processing Pipeline 3dd079d20234bc852cae6aa55368cd77 https://www.encodeproject.org/files/ENCFF942MAF/@@download/ENCFF942MAF.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF448WJZ bigWig fold change over control ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF647OZY, ENCFF730MAX 881438439 ENCODE Processing Pipeline 2aec10d8fc0d54e1a60e9bbe685733b8 https://www.encodeproject.org/files/ENCFF448WJZ/@@download/ENCFF448WJZ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF201FQM bigWig fold change over control ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF384DMV, ENCFF647OZY 810672094 ENCODE Processing Pipeline 9d2d60e7468d3ab1a957b8f8fdbe2cee https://www.encodeproject.org/files/ENCFF201FQM/@@download/ENCFF201FQM.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF090ECP bigWig fold change over control ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF384DMV, ENCFF647OZY, ENCFF730MAX 1284724071 ENCODE Processing Pipeline 9f9f23474ed403e664171d9e769c6358 https://www.encodeproject.org/files/ENCFF090ECP/@@download/ENCFF090ECP.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF372WLC bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF647OZY, ENCFF730MAX 6220212 ENCODE Processing Pipeline 8bdcefbf07262df0dba86c2c7bc35f03 https://www.encodeproject.org/files/ENCFF372WLC/@@download/ENCFF372WLC.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF304MSV bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF384DMV, ENCFF647OZY 6020442 ENCODE Processing Pipeline d02c6fbc78d8241adf3bcad678e6de39 https://www.encodeproject.org/files/ENCFF304MSV/@@download/ENCFF304MSV.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF452IVR bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF384DMV, ENCFF647OZY, ENCFF730MAX 6942828 ENCODE Processing Pipeline 3d99a316d91b502dca9327b5d6444b73 https://www.encodeproject.org/files/ENCFF452IVR/@@download/ENCFF452IVR.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF297BPN bigBed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF372WLC 13332823 ENCODE Processing Pipeline 7708bac538f364058362c477d08b2a02 https://www.encodeproject.org/files/ENCFF297BPN/@@download/ENCFF297BPN.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF367YZR bigBed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF304MSV 13301106 ENCODE Processing Pipeline b445b5ca67de5cf2c14449193da633c7 https://www.encodeproject.org/files/ENCFF367YZR/@@download/ENCFF367YZR.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF252CIT bigBed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF452IVR 13142959 ENCODE Processing Pipeline 1d55f91186dc3e2df6d7cf2b62130fa8 https://www.encodeproject.org/files/ENCFF252CIT/@@download/ENCFF252CIT.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF724JQX bed narrowPeak conservative idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF304MSV, ENCFF372WLC, ENCFF419RSJ, ENCFF452IVR 118143 ENCODE Processing Pipeline 19a03e405206433daf3e364a3ae4fb12 https://www.encodeproject.org/files/ENCFF724JQX/@@download/ENCFF724JQX.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF837YEY bigBed narrowPeak conservative idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF724JQX 279566 ENCODE Processing Pipeline 300959ba113de91642730b17c900ae6e https://www.encodeproject.org/files/ENCFF837YEY/@@download/ENCFF837YEY.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF108JFW bed narrowPeak optimal idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF304MSV, ENCFF372WLC, ENCFF419RSJ, ENCFF452IVR 149217 ENCODE Processing Pipeline 5d8acef49b68b5aa5eb08a6fbe28e3c2 https://www.encodeproject.org/files/ENCFF108JFW/@@download/ENCFF108JFW.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF313XWR bigBed narrowPeak optimal idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF108JFW 326000 ENCODE Processing Pipeline 4dfa173a42a3859ecaf85b66f782311e https://www.encodeproject.org/files/ENCFF313XWR/@@download/ENCFF313XWR.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF514EUV bigBed narrowPeak optimal idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF408SNO 233154 ENCODE Processing Pipeline 8a8c8ba58fd6dab122137c8329a06452 https://www.encodeproject.org/files/ENCFF514EUV/@@download/ENCFF514EUV.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF322LZW bed narrowPeak conservative idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF307MIA, ENCFF377KNC, ENCFF816UNQ 95844 ENCODE Processing Pipeline 91fb15bea82e901f80e5f72fd85629a4 https://www.encodeproject.org/files/ENCFF322LZW/@@download/ENCFF322LZW.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF815PKL bigBed narrowPeak conservative idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF322LZW 201185 ENCODE Processing Pipeline f81c3858b79fbc4d14ed1c61f5870738 https://www.encodeproject.org/files/ENCFF815PKL/@@download/ENCFF815PKL.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF408SNO bed narrowPeak optimal idr thresholded peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF307MIA, ENCFF377KNC, ENCFF816UNQ 122119 ENCODE Processing Pipeline 303ed3ff929ea3bdad495908705d0662 https://www.encodeproject.org/files/ENCFF408SNO/@@download/ENCFF408SNO.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF777QMW fastq reads ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF810YUG 5408235388 Michael Snyder, Stanford 03d500b4ef4e480552c46d4a82dffa12 SRA:SRR6214221 https://www.encodeproject.org/files/ENCFF777QMW/@@download/ENCFF777QMW.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF738LVY fastq reads ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF321VUJ 5477943934 Michael Snyder, Stanford ca2624c3d9fa193da41771fcb1c2153a SRA:SRR6214220 https://www.encodeproject.org/files/ENCFF738LVY/@@download/ENCFF738LVY.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF321VUJ fastq reads ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF738LVY 6695711156 Michael Snyder, Stanford 624e419648802e31a4fe0b613696e606 SRA:SRR6214220 https://www.encodeproject.org/files/ENCFF321VUJ/@@download/ENCFF321VUJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF810YUG fastq reads ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF777QMW 6613451303 Michael Snyder, Stanford 1fc327538c9a22307ed2773b39bc0465 SRA:SRR6214221 https://www.encodeproject.org/files/ENCFF810YUG/@@download/ENCFF810YUG.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF291ZQX bam unfiltered alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF777QMW, ENCFF810YUG 11183687759 ENCODE Processing Pipeline cc34950c8dfc90ec64870aa062306b45 https://www.encodeproject.org/files/ENCFF291ZQX/@@download/ENCFF291ZQX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF950PRQ bam unfiltered alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF321VUJ, ENCFF738LVY, ENCFF807MUK 11297565761 ENCODE Processing Pipeline 796432a150c13e5a3dcf0a671424cb07 https://www.encodeproject.org/files/ENCFF950PRQ/@@download/ENCFF950PRQ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF822MRL bam unfiltered alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF321VUJ, ENCFF643CGH, ENCFF738LVY 11320181349 ENCODE Processing Pipeline cb7ab477947b07a992f520a28f6a9327 https://www.encodeproject.org/files/ENCFF822MRL/@@download/ENCFF822MRL.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF245FAX bam unfiltered alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF777QMW, ENCFF807MUK, ENCFF810YUG 11161390801 ENCODE Processing Pipeline e4e16098e3b79a8b925289aa04c48d25 https://www.encodeproject.org/files/ENCFF245FAX/@@download/ENCFF245FAX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF735BIE bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF321VUJ, ENCFF738LVY, ENCFF807MUK 9043080367 ENCODE Processing Pipeline 456891e8d2d653e8e0068320458c814a https://www.encodeproject.org/files/ENCFF735BIE/@@download/ENCFF735BIE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF969XIH bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF321VUJ, ENCFF643CGH, ENCFF738LVY 9044929299 ENCODE Processing Pipeline f29dbc3c932926bdc129cc4bec7a74c8 https://www.encodeproject.org/files/ENCFF969XIH/@@download/ENCFF969XIH.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF150TKS bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF777QMW, ENCFF807MUK, ENCFF810YUG 9080755023 ENCODE Processing Pipeline 45f9b8288a0a74f0e9240ac1f3d1111f https://www.encodeproject.org/files/ENCFF150TKS/@@download/ENCFF150TKS.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF871WHM bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF777QMW, ENCFF810YUG 9081925106 ENCODE Processing Pipeline aeb4d11920e3cad1b669e10a9fa73dc0 https://www.encodeproject.org/files/ENCFF871WHM/@@download/ENCFF871WHM.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF409KQJ bigWig signal p-value ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF871WHM 1908990095 ENCODE Processing Pipeline 79fe55f5b995273fa55172c1126b134e https://www.encodeproject.org/files/ENCFF409KQJ/@@download/ENCFF409KQJ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF575BZE bigWig signal p-value ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF150TKS, ENCFF182WHU 1906682365 ENCODE Processing Pipeline db930c577358671cb92cf6ff656170b2 https://www.encodeproject.org/files/ENCFF575BZE/@@download/ENCFF575BZE.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF988SIO bigWig fold change over control ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF150TKS, ENCFF182WHU 2260473964 ENCODE Processing Pipeline 7824afc69c1c71f9e044d9c893b2a787 https://www.encodeproject.org/files/ENCFF988SIO/@@download/ENCFF988SIO.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF469XZC bigWig fold change over control ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF871WHM 2262056230 ENCODE Processing Pipeline faf567a3f85bc82f10fd474ca6aa02ea https://www.encodeproject.org/files/ENCFF469XZC/@@download/ENCFF469XZC.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF179DJI bigWig signal p-value ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF735BIE 1952399798 ENCODE Processing Pipeline 9f0af54fd58dfdda749f013f8ae721f6 https://www.encodeproject.org/files/ENCFF179DJI/@@download/ENCFF179DJI.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF950BTL bigWig signal p-value ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF810LLR, ENCFF871WHM, ENCFF969XIH 1859003194 ENCODE Processing Pipeline 329d466e4a5949c90c7ae3b16422803d https://www.encodeproject.org/files/ENCFF950BTL/@@download/ENCFF950BTL.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF372PZS bigWig signal p-value ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF150TKS, ENCFF182WHU, ENCFF735BIE 1865277611 ENCODE Processing Pipeline c609734c2aebd21271947ffb6c0b242c https://www.encodeproject.org/files/ENCFF372PZS/@@download/ENCFF372PZS.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF732XCL bigWig fold change over control ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF810LLR, ENCFF969XIH 2302915330 ENCODE Processing Pipeline fd4eec165ce30848c80ae2ff851474f9 https://www.encodeproject.org/files/ENCFF732XCL/@@download/ENCFF732XCL.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF056YMS bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF810LLR, ENCFF969XIH 7305387 ENCODE Processing Pipeline ff727a29c7edbb4f7aeab9ef568a287d https://www.encodeproject.org/files/ENCFF056YMS/@@download/ENCFF056YMS.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF586MTZ bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF150TKS, ENCFF182WHU 7298479 ENCODE Processing Pipeline 7961a86248fb5d4b3ef70953b24e212b https://www.encodeproject.org/files/ENCFF586MTZ/@@download/ENCFF586MTZ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF409NFY bigWig fold change over control ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF735BIE 2309570979 ENCODE Processing Pipeline fe0692998cd9c9e7b93b3b4cbc97b071 https://www.encodeproject.org/files/ENCFF409NFY/@@download/ENCFF409NFY.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF405JCS bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF735BIE 7299340 ENCODE Processing Pipeline 8fbb2add6087a350870389c60b7b303f https://www.encodeproject.org/files/ENCFF405JCS/@@download/ENCFF405JCS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF512YNV bed narrowPeak optimal idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF405JCS, ENCFF450DKI, ENCFF586MTZ 68354 ENCODE Processing Pipeline 78e2bf2ae843b0c4a4d42772afb74972 https://www.encodeproject.org/files/ENCFF512YNV/@@download/ENCFF512YNV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF632QKU bigWig signal p-value ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF810LLR, ENCFF969XIH 1945672526 ENCODE Processing Pipeline 8d6f43b5d94489eaacb54a6fd268a7bf https://www.encodeproject.org/files/ENCFF632QKU/@@download/ENCFF632QKU.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF068NFG bigWig fold change over control ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF810LLR, ENCFF871WHM, ENCFF969XIH 4402510559 ENCODE Processing Pipeline 952fb23165ff64a305ae47012b8d390a https://www.encodeproject.org/files/ENCFF068NFG/@@download/ENCFF068NFG.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF342CAC bigWig fold change over control ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF150TKS, ENCFF182WHU, ENCFF735BIE 4406701191 ENCODE Processing Pipeline 7123e280372f84d49e5e34e233053e6c https://www.encodeproject.org/files/ENCFF342CAC/@@download/ENCFF342CAC.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF962ASN bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF810LLR, ENCFF871WHM, ENCFF969XIH 7345078 ENCODE Processing Pipeline 9006ca069b648f78908ffab09085610f https://www.encodeproject.org/files/ENCFF962ASN/@@download/ENCFF962ASN.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF525NFN bigBed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF962ASN 13209830 ENCODE Processing Pipeline ca30a67c8f594dc0c6a0fe7ac8256ec5 https://www.encodeproject.org/files/ENCFF525NFN/@@download/ENCFF525NFN.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF354UKT bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF810LLR, ENCFF871WHM 7302951 ENCODE Processing Pipeline 134f70fba33dba4c85938deea2116e0e https://www.encodeproject.org/files/ENCFF354UKT/@@download/ENCFF354UKT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF032IPA bed narrowPeak optimal idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF056YMS, ENCFF354UKT, ENCFF419RSJ, ENCFF962ASN 67751 ENCODE Processing Pipeline 80880f36314d4d298d69b2ca3789ea0c https://www.encodeproject.org/files/ENCFF032IPA/@@download/ENCFF032IPA.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF463ZRM bed narrowPeak conservative idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF405JCS, ENCFF450DKI, ENCFF586MTZ 46193 ENCODE Processing Pipeline c4ce1c429e4c0420c4c5a47c3e4eacbe https://www.encodeproject.org/files/ENCFF463ZRM/@@download/ENCFF463ZRM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF778OFA bigBed narrowPeak optimal idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF032IPA 187445 ENCODE Processing Pipeline 790658e0e7db40f02a7845c1fe4dc786 https://www.encodeproject.org/files/ENCFF778OFA/@@download/ENCFF778OFA.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF936CQG bigBed narrowPeak conservative idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF463ZRM 127077 ENCODE Processing Pipeline 3de826a758b8e5b7f61dba67b0ca2f0a https://www.encodeproject.org/files/ENCFF936CQG/@@download/ENCFF936CQG.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF588TVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF512YNV 186321 ENCODE Processing Pipeline 120b9b022275ca122a2e8b1e064ba011 https://www.encodeproject.org/files/ENCFF588TVQ/@@download/ENCFF588TVQ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF047XAO bigBed narrowPeak conservative idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF897JRP 126886 ENCODE Processing Pipeline 8d41101ec4203fa0d1111ff237fa427f https://www.encodeproject.org/files/ENCFF047XAO/@@download/ENCFF047XAO.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF797OAT bigBed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF354UKT 11213628 ENCODE Processing Pipeline b05356e3a32d08ffe33b497080044cb0 https://www.encodeproject.org/files/ENCFF797OAT/@@download/ENCFF797OAT.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF450DKI bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF150TKS, ENCFF182WHU, ENCFF735BIE 7340449 ENCODE Processing Pipeline da6759023787c1d915cdb93b8dbaa694 https://www.encodeproject.org/files/ENCFF450DKI/@@download/ENCFF450DKI.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF359ZCP bigBed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF056YMS 11192255 ENCODE Processing Pipeline 8605b88dad7a46e1b867eecba45cd84c https://www.encodeproject.org/files/ENCFF359ZCP/@@download/ENCFF359ZCP.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF952MEN bigBed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF586MTZ 11197483 ENCODE Processing Pipeline 94e543e970490715a776a8c0f9491d17 https://www.encodeproject.org/files/ENCFF952MEN/@@download/ENCFF952MEN.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF527NXU bigBed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF405JCS 11174677 ENCODE Processing Pipeline 383813ed3e487ec98cea492e30667293 https://www.encodeproject.org/files/ENCFF527NXU/@@download/ENCFF527NXU.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF897JRP bed narrowPeak conservative idr thresholded peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF056YMS, ENCFF354UKT, ENCFF419RSJ, ENCFF962ASN 44835 ENCODE Processing Pipeline ad7da643b3a01c5ba43536795659dd13 https://www.encodeproject.org/files/ENCFF897JRP/@@download/ENCFF897JRP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF816VLD bigBed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF450DKI 13192976 ENCODE Processing Pipeline adf12f041dd6395434e58cd304a84cdf https://www.encodeproject.org/files/ENCFF816VLD/@@download/ENCFF816VLD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF008APY fastq reads ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF451CTA 1913155238 Michael Snyder, Stanford ebaa38d6c60dadb2668f061516dcd7ca https://www.encodeproject.org/files/ENCFF008APY/@@download/ENCFF008APY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF050QIO fastq reads ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF387SYY 2983620042 Michael Snyder, Stanford b825bfcc4825e6fd47a15fd74b34c6f7 https://www.encodeproject.org/files/ENCFF050QIO/@@download/ENCFF050QIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF451CTA fastq reads ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF008APY 1852583799 Michael Snyder, Stanford 207c155b2c4716e9dc94e0a539b93572 https://www.encodeproject.org/files/ENCFF451CTA/@@download/ENCFF451CTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF387SYY fastq reads ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF050QIO 2907575072 Michael Snyder, Stanford 0a69631519478f0d8b529d266f6df25a https://www.encodeproject.org/files/ENCFF387SYY/@@download/ENCFF387SYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF744NMO bam unfiltered alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 100 ENCFF008APY, ENCFF451CTA, ENCFF807MUK 4006273538 ENCODE Processing Pipeline 9b1d2103caa78df6efa04c55d988ab80 https://www.encodeproject.org/files/ENCFF744NMO/@@download/ENCFF744NMO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF619ONV bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 100 ENCFF008APY, ENCFF451CTA, ENCFF807MUK 2678396970 ENCODE Processing Pipeline cc1e1c7947086387474d97dad383b483 https://www.encodeproject.org/files/ENCFF619ONV/@@download/ENCFF619ONV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF085XSB bam unfiltered alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 100 ENCFF008APY, ENCFF451CTA, ENCFF643CGH 4008486120 ENCODE Processing Pipeline 1453f17264b4306fad7e149c903290a7 https://www.encodeproject.org/files/ENCFF085XSB/@@download/ENCFF085XSB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF708BKX bam unfiltered alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 100 ENCFF050QIO, ENCFF387SYY, ENCFF807MUK 6362699301 ENCODE Processing Pipeline 0bb6c9102b63d7e5980318ee33f7364b https://www.encodeproject.org/files/ENCFF708BKX/@@download/ENCFF708BKX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF923ISY bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 100 ENCFF008APY, ENCFF451CTA, ENCFF643CGH 2679360550 ENCODE Processing Pipeline e16918baf1704eb423114ef306f8fd48 https://www.encodeproject.org/files/ENCFF923ISY/@@download/ENCFF923ISY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF563NRA bam unfiltered alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 100 ENCFF050QIO, ENCFF387SYY, ENCFF643CGH 6369578976 ENCODE Processing Pipeline 1110376402d91a256f0bca9c5b37fbd4 https://www.encodeproject.org/files/ENCFF563NRA/@@download/ENCFF563NRA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF942SZJ bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 100 ENCFF050QIO, ENCFF387SYY, ENCFF643CGH 4997082449 ENCODE Processing Pipeline 31d5107c9f7b9361cc3adba7b698e3e6 https://www.encodeproject.org/files/ENCFF942SZJ/@@download/ENCFF942SZJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF364FHT bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 100 ENCFF050QIO, ENCFF387SYY, ENCFF807MUK 4993198514 ENCODE Processing Pipeline e582b1f8e8c03fa4c92e6fad2abf4b4e https://www.encodeproject.org/files/ENCFF364FHT/@@download/ENCFF364FHT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF724XKA bigWig signal p-value ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF910IKB, ENCFF923ISY 999384866 ENCODE Processing Pipeline f7d087fa531d767443d619e8144e1826 https://www.encodeproject.org/files/ENCFF724XKA/@@download/ENCFF724XKA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF241VOM bigWig fold change over control ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF910IKB, ENCFF923ISY 909746801 ENCODE Processing Pipeline 373bebff41f6c636fe42fb468e1b611a https://www.encodeproject.org/files/ENCFF241VOM/@@download/ENCFF241VOM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF755JXW bigWig signal p-value ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF942SZJ 997339810 ENCODE Processing Pipeline 13718b473fdc1a524495a8e8bf5d4e09 https://www.encodeproject.org/files/ENCFF755JXW/@@download/ENCFF755JXW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF584AZM bigWig signal p-value ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF910IKB, ENCFF923ISY, ENCFF942SZJ 1953248041 ENCODE Processing Pipeline da4eb81d2f3b01f9ca864ea8eaf4a8da https://www.encodeproject.org/files/ENCFF584AZM/@@download/ENCFF584AZM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF765QSG bigWig fold change over control ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF942SZJ 1253458531 ENCODE Processing Pipeline fc8caf50733b34069b9e3aa0f3db41ed https://www.encodeproject.org/files/ENCFF765QSG/@@download/ENCFF765QSG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF782QHB bigWig fold change over control ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF910IKB, ENCFF923ISY, ENCFF942SZJ 2051438493 ENCODE Processing Pipeline a1250c6c8347d553830051aac3b4c395 https://www.encodeproject.org/files/ENCFF782QHB/@@download/ENCFF782QHB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF341RTC bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF910IKB, ENCFF923ISY 5995169 ENCODE Processing Pipeline 357f7b2b14dec31302489623f7df954b https://www.encodeproject.org/files/ENCFF341RTC/@@download/ENCFF341RTC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF221WGZ bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF942SZJ 6435923 ENCODE Processing Pipeline aef9c926f6355abf715d77be0b78a2dc https://www.encodeproject.org/files/ENCFF221WGZ/@@download/ENCFF221WGZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF995YCS bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF910IKB, ENCFF923ISY, ENCFF942SZJ 7099685 ENCODE Processing Pipeline 66acd538a92ced33dd72e286a03a1d64 https://www.encodeproject.org/files/ENCFF995YCS/@@download/ENCFF995YCS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF661SFR bigBed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF341RTC 11133901 ENCODE Processing Pipeline 900e6017a6b0286c58bc063af1de7e4a https://www.encodeproject.org/files/ENCFF661SFR/@@download/ENCFF661SFR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF026WXT bigBed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF221WGZ 11146152 ENCODE Processing Pipeline b45edf42b72a3d89482659ffb83ce56d https://www.encodeproject.org/files/ENCFF026WXT/@@download/ENCFF026WXT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF099ERA bigBed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF995YCS 13218643 ENCODE Processing Pipeline eb4f6607309ae9c79182e58558521d83 https://www.encodeproject.org/files/ENCFF099ERA/@@download/ENCFF099ERA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF159GUY bed narrowPeak conservative idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF221WGZ, ENCFF341RTC, ENCFF419RSJ, ENCFF995YCS 20147 ENCODE Processing Pipeline 36f5247ae68a5ad3b5fb7ffa7fc2f795 https://www.encodeproject.org/files/ENCFF159GUY/@@download/ENCFF159GUY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF490TZV bigBed narrowPeak conservative idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF159GUY 88800 ENCODE Processing Pipeline 37683c2bb2e19492989dafd30f0f7e53 https://www.encodeproject.org/files/ENCFF490TZV/@@download/ENCFF490TZV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF534VQL bed narrowPeak optimal idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF221WGZ, ENCFF341RTC, ENCFF419RSJ, ENCFF995YCS 49363 ENCODE Processing Pipeline 5466c64f400b515e7e0c9105e7398f17 https://www.encodeproject.org/files/ENCFF534VQL/@@download/ENCFF534VQL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF795RXF bigBed narrowPeak optimal idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF534VQL 133446 ENCODE Processing Pipeline 75426d091f223a52dd5b8632fabb73cd https://www.encodeproject.org/files/ENCFF795RXF/@@download/ENCFF795RXF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF016RAU bigWig fold change over control ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF619ONV 910412868 ENCODE Processing Pipeline 617527b15ab978dfbb3a3788ea5be6ae https://www.encodeproject.org/files/ENCFF016RAU/@@download/ENCFF016RAU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF372LVB bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF619ONV 5996883 ENCODE Processing Pipeline 8fb7495ff05c9be22573c84ca5d99b42 https://www.encodeproject.org/files/ENCFF372LVB/@@download/ENCFF372LVB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF807MSO bigBed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF372LVB 11127794 ENCODE Processing Pipeline 6da98bf476cd5498666f90939542926b https://www.encodeproject.org/files/ENCFF807MSO/@@download/ENCFF807MSO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF561IZB bed narrowPeak optimal idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF372LVB, ENCFF733BCO, ENCFF971BFZ 49333 ENCODE Processing Pipeline f2c0a575184e1392df356ca4a32d0f8f https://www.encodeproject.org/files/ENCFF561IZB/@@download/ENCFF561IZB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF060VWY bigBed narrowPeak optimal idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF561IZB 131846 ENCODE Processing Pipeline 49d87dcf8e4dfd5ab137d93ae4b8f0ec https://www.encodeproject.org/files/ENCFF060VWY/@@download/ENCFF060VWY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF255CMY bigWig signal p-value ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF619ONV 887421621 ENCODE Processing Pipeline c1e9e1255aeab85861b56cea806f03c5 https://www.encodeproject.org/files/ENCFF255CMY/@@download/ENCFF255CMY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF733BCO bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF364FHT 6433432 ENCODE Processing Pipeline df054e85b6b3638edd1c38698fa4235c https://www.encodeproject.org/files/ENCFF733BCO/@@download/ENCFF733BCO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF971BFZ bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF364FHT, ENCFF581ZJL, ENCFF619ONV 7099199 ENCODE Processing Pipeline 0ea44abf1b4e5b091b6f8aaa98ea9e76 https://www.encodeproject.org/files/ENCFF971BFZ/@@download/ENCFF971BFZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF360VBZ bed narrowPeak conservative idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF372LVB, ENCFF733BCO, ENCFF971BFZ 19671 ENCODE Processing Pipeline 3dbb5c32d57a10387e10882b42d7969a https://www.encodeproject.org/files/ENCFF360VBZ/@@download/ENCFF360VBZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF593SCQ bigWig signal p-value ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF364FHT 1251584460 ENCODE Processing Pipeline 856b4f94e28d73ac070cfd5664c7f2e4 https://www.encodeproject.org/files/ENCFF593SCQ/@@download/ENCFF593SCQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF317QLL bigWig fold change over control ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF364FHT, ENCFF581ZJL, ENCFF619ONV 2045796640 ENCODE Processing Pipeline 3a87f7265d53143a4f654e505ab87383 https://www.encodeproject.org/files/ENCFF317QLL/@@download/ENCFF317QLL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF052UYV bigWig signal p-value ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF364FHT, ENCFF581ZJL, ENCFF619ONV 2036628089 ENCODE Processing Pipeline 14b5f6b5162e0565f114bce2fbd2252a https://www.encodeproject.org/files/ENCFF052UYV/@@download/ENCFF052UYV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF717SCD bigBed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF971BFZ 13200765 ENCODE Processing Pipeline 2a43f214e92bb3bcdb4403d83c7fcb9e https://www.encodeproject.org/files/ENCFF717SCD/@@download/ENCFF717SCD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF642DME bigWig fold change over control ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF364FHT 1227469912 ENCODE Processing Pipeline dcb5b0f13922960a067a852888eb05bb https://www.encodeproject.org/files/ENCFF642DME/@@download/ENCFF642DME.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF442KSW bigBed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF733BCO 11124290 ENCODE Processing Pipeline e8b25979831345eac5a26632136c7dcf https://www.encodeproject.org/files/ENCFF442KSW/@@download/ENCFF442KSW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF142YMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF360VBZ 87158 ENCODE Processing Pipeline e4f7fa023831fc67477d6148fdadfd31 https://www.encodeproject.org/files/ENCFF142YMQ/@@download/ENCFF142YMQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF715ELD bam unfiltered alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 100 ENCFF519FTA, ENCFF607CQM, ENCFF807MUK 7737934520 ENCODE Processing Pipeline 0e3f653a9fa52cec0f923285bb3d2956 https://www.encodeproject.org/files/ENCFF715ELD/@@download/ENCFF715ELD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF119KHE bam unfiltered alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 100 ENCFF358PYP, ENCFF684JBQ, ENCFF807MUK 5792116115 ENCODE Processing Pipeline 7d56fec227b89e92c48031d2cc5eb594 https://www.encodeproject.org/files/ENCFF119KHE/@@download/ENCFF119KHE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF358PYP fastq reads ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF684JBQ 2689324638 Michael Snyder, Stanford 644a6b12a05fd8055bcedb2d6548d279 SRA:SRR5111835 https://www.encodeproject.org/files/ENCFF358PYP/@@download/ENCFF358PYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF697PWI/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF519FTA fastq reads ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF607CQM 3510850911 Michael Snyder, Stanford eca8bda3047653b0119071cf4dbb9d5f SRA:SRR5111834 https://www.encodeproject.org/files/ENCFF519FTA/@@download/ENCFF519FTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF697PWI/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF684JBQ fastq reads ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF358PYP 2722456132 Michael Snyder, Stanford 49b7243d6e800b84deeecef3f03868cf SRA:SRR5111835 https://www.encodeproject.org/files/ENCFF684JBQ/@@download/ENCFF684JBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF486HGM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF607CQM fastq reads ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF519FTA 3547218126 Michael Snyder, Stanford 2cd6d3ea11095dc05f975bd94075f65e SRA:SRR5111834 https://www.encodeproject.org/files/ENCFF607CQM/@@download/ENCFF607CQM.fastq.gz Illumina HiSeq 2000 /files/ENCFF486HGM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF708ZXK bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 100 ENCFF358PYP, ENCFF684JBQ, ENCFF807MUK 3779657404 ENCODE Processing Pipeline c60ffeee94ef61ca65ca88a526496d64 https://www.encodeproject.org/files/ENCFF708ZXK/@@download/ENCFF708ZXK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF169LKQ bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 100 ENCFF519FTA, ENCFF607CQM, ENCFF807MUK 6325586843 ENCODE Processing Pipeline 0f762170d89fc16c20a17072b5f4514e https://www.encodeproject.org/files/ENCFF169LKQ/@@download/ENCFF169LKQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF630QQM bigWig signal p-value ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF563OVT, ENCFF708ZXK 859881012 ENCODE Processing Pipeline 59f34899f8cda6a2f7adc18cce16769e https://www.encodeproject.org/files/ENCFF630QQM/@@download/ENCFF630QQM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF645XKW bigWig signal p-value ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF169LKQ, ENCFF563OVT 1074220295 ENCODE Processing Pipeline 807470513bec26d303e39135c0a2b58e https://www.encodeproject.org/files/ENCFF645XKW/@@download/ENCFF645XKW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF260RPO bigWig signal p-value ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF169LKQ, ENCFF563OVT, ENCFF708ZXK 1376429982 ENCODE Processing Pipeline d04277d0376904dee29b2df336fca57d https://www.encodeproject.org/files/ENCFF260RPO/@@download/ENCFF260RPO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF800KSB bigWig fold change over control ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF563OVT, ENCFF708ZXK 922405486 ENCODE Processing Pipeline 9fe341a73d05971713c567093f9777da https://www.encodeproject.org/files/ENCFF800KSB/@@download/ENCFF800KSB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF991UQW bigWig fold change over control ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF169LKQ, ENCFF563OVT 1289880045 ENCODE Processing Pipeline 5ada8b0fd5606b15cb30aa38bd255153 https://www.encodeproject.org/files/ENCFF991UQW/@@download/ENCFF991UQW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF229SYD bigWig fold change over control ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF169LKQ, ENCFF563OVT, ENCFF708ZXK 1703851808 ENCODE Processing Pipeline 9c0375027f9b630a509dec17ed32b036 https://www.encodeproject.org/files/ENCFF229SYD/@@download/ENCFF229SYD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF367KYN bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF169LKQ, ENCFF563OVT 6402393 ENCODE Processing Pipeline 4b7df7883c2538296b947e03cbc3ab8d https://www.encodeproject.org/files/ENCFF367KYN/@@download/ENCFF367KYN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF119DBB bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF563OVT, ENCFF708ZXK 5808722 ENCODE Processing Pipeline 61b7ec4a83f998815e2e8b035034a85c https://www.encodeproject.org/files/ENCFF119DBB/@@download/ENCFF119DBB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF013RUD bigBed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF367KYN 11216954 ENCODE Processing Pipeline f1c7510d3cec16657e8ed2b0d47c9f6f https://www.encodeproject.org/files/ENCFF013RUD/@@download/ENCFF013RUD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF258DEA bigBed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF163SYH 13388829 ENCODE Processing Pipeline 1e3b334d2593a33c9d4c13f653468649 https://www.encodeproject.org/files/ENCFF258DEA/@@download/ENCFF258DEA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF163SYH bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF169LKQ, ENCFF563OVT, ENCFF708ZXK 7095681 ENCODE Processing Pipeline 207f90c80050a48c07e83c72c794639f https://www.encodeproject.org/files/ENCFF163SYH/@@download/ENCFF163SYH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF203IKW bigBed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF119DBB 11292579 ENCODE Processing Pipeline dfaa45011275df2ec4cf909ccc1ab6a0 https://www.encodeproject.org/files/ENCFF203IKW/@@download/ENCFF203IKW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF046OVB bam unfiltered alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 100 ENCFF358PYP, ENCFF643CGH, ENCFF684JBQ 5799509450 ENCODE Processing Pipeline ea965999bf3fd41e109290a9d40826c6 https://www.encodeproject.org/files/ENCFF046OVB/@@download/ENCFF046OVB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF466WRX bam unfiltered alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 100 ENCFF519FTA, ENCFF607CQM, ENCFF643CGH 7751455846 ENCODE Processing Pipeline 284ec10693ce004a50530f714de6630e https://www.encodeproject.org/files/ENCFF466WRX/@@download/ENCFF466WRX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF829XLC bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 100 ENCFF358PYP, ENCFF643CGH, ENCFF684JBQ 3781074241 ENCODE Processing Pipeline 9ba5be4b5bd3ecc30911e165f142804b https://www.encodeproject.org/files/ENCFF829XLC/@@download/ENCFF829XLC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF771KEQ bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 100 ENCFF519FTA, ENCFF607CQM, ENCFF643CGH 6328776224 ENCODE Processing Pipeline 44d76c726cbb618ee906d738047f33d7 https://www.encodeproject.org/files/ENCFF771KEQ/@@download/ENCFF771KEQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF817SSK bigWig signal p-value ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF829XLC, ENCFF936BLQ 1029319049 ENCODE Processing Pipeline 7e74e8137c475f3b6ebfd2c3d6da549c https://www.encodeproject.org/files/ENCFF817SSK/@@download/ENCFF817SSK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF099PNY bigWig signal p-value ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF771KEQ, ENCFF936BLQ 1088363978 ENCODE Processing Pipeline 8b83920a10b38857f384561bce01aea1 https://www.encodeproject.org/files/ENCFF099PNY/@@download/ENCFF099PNY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF922MHS bigWig signal p-value ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF771KEQ, ENCFF829XLC, ENCFF936BLQ 1379460937 ENCODE Processing Pipeline 381968c825fea7c7a7b053069b882070 https://www.encodeproject.org/files/ENCFF922MHS/@@download/ENCFF922MHS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF991QMG bigWig fold change over control ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF829XLC, ENCFF936BLQ 955463249 ENCODE Processing Pipeline e4a86c96db9c71de01e7b75606e3018d https://www.encodeproject.org/files/ENCFF991QMG/@@download/ENCFF991QMG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF975TUN bigWig fold change over control ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF771KEQ, ENCFF936BLQ 1292421681 ENCODE Processing Pipeline ac49c0b11454299322bdae10faeb7c91 https://www.encodeproject.org/files/ENCFF975TUN/@@download/ENCFF975TUN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF314TEX bigWig fold change over control ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF771KEQ, ENCFF829XLC, ENCFF936BLQ 1707275232 ENCODE Processing Pipeline cf0824e9577aca7ecc9e7e7b6a2eeffe https://www.encodeproject.org/files/ENCFF314TEX/@@download/ENCFF314TEX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF471VXD bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF829XLC, ENCFF936BLQ 5668159 ENCODE Processing Pipeline a6bac39081c84d1b8c1604783a50dba4 https://www.encodeproject.org/files/ENCFF471VXD/@@download/ENCFF471VXD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF625AOG bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF771KEQ, ENCFF936BLQ 6257787 ENCODE Processing Pipeline ccbd56a931d20fc930e84f7b34c9fef1 https://www.encodeproject.org/files/ENCFF625AOG/@@download/ENCFF625AOG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF855LPG bigBed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF471VXD 11288184 ENCODE Processing Pipeline ab4db346a818fd5666b903e212d1ee5f https://www.encodeproject.org/files/ENCFF855LPG/@@download/ENCFF855LPG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF631VNO bigBed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF625AOG 11236463 ENCODE Processing Pipeline 4bec6c056085c049eb8bf31c502a4049 https://www.encodeproject.org/files/ENCFF631VNO/@@download/ENCFF631VNO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF200RYV bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF771KEQ, ENCFF829XLC, ENCFF936BLQ 6995284 ENCODE Processing Pipeline f0e4ea7436bf884646ce2abbff27188d https://www.encodeproject.org/files/ENCFF200RYV/@@download/ENCFF200RYV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF286JTK bed narrowPeak conservative idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF200RYV, ENCFF419RSJ, ENCFF471VXD, ENCFF625AOG 152294 ENCODE Processing Pipeline 11c6a1983e80e59d32f1455140ed9ae4 https://www.encodeproject.org/files/ENCFF286JTK/@@download/ENCFF286JTK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF022UKX bigBed narrowPeak optimal idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF381GEK 427808 ENCODE Processing Pipeline 12bd4f4d58aaf6904fff62acd09b34d4 https://www.encodeproject.org/files/ENCFF022UKX/@@download/ENCFF022UKX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF381GEK bed narrowPeak optimal idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF200RYV, ENCFF419RSJ, ENCFF471VXD, ENCFF625AOG 224803 ENCODE Processing Pipeline 90e495f57873d7227a45d82efa759347 https://www.encodeproject.org/files/ENCFF381GEK/@@download/ENCFF381GEK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF574HPK bigBed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF200RYV 13405683 ENCODE Processing Pipeline 22365a144d666da74ac9bf3f77317fdb https://www.encodeproject.org/files/ENCFF574HPK/@@download/ENCFF574HPK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF210PRE bigBed narrowPeak conservative idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF286JTK 322673 ENCODE Processing Pipeline eb86d58c7aa1bdcb32a704f261c75597 https://www.encodeproject.org/files/ENCFF210PRE/@@download/ENCFF210PRE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF387ZED bed narrowPeak conservative idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF119DBB, ENCFF163SYH, ENCFF367KYN 124796 ENCODE Processing Pipeline 1c47d766d473a12e61a1c3dc9c644db4 https://www.encodeproject.org/files/ENCFF387ZED/@@download/ENCFF387ZED.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF643CWU bigBed narrowPeak conservative idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF387ZED 232306 ENCODE Processing Pipeline 9d6fe50023ff75ae1224663c1c1add1c https://www.encodeproject.org/files/ENCFF643CWU/@@download/ENCFF643CWU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF802XZN bed narrowPeak optimal idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF119DBB, ENCFF163SYH, ENCFF367KYN 180679 ENCODE Processing Pipeline c2b97dbdcdb1a3eb640515e00cd7a237 https://www.encodeproject.org/files/ENCFF802XZN/@@download/ENCFF802XZN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF925KNL bigBed narrowPeak optimal idr thresholded peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF802XZN 362676 ENCODE Processing Pipeline ecfd5b01017ca51fe0bc5210a685729f https://www.encodeproject.org/files/ENCFF925KNL/@@download/ENCFF925KNL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF747RJL fastq reads ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF088PXS 4949885367 Michael Snyder, Stanford 0cbf08f7a02164d56763cda87a75dcea SRA:SRR6213130 https://www.encodeproject.org/files/ENCFF747RJL/@@download/ENCFF747RJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF580YIK/ released mild to moderate bottlenecking ENCFF088PXS fastq reads ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF747RJL 4992784985 Michael Snyder, Stanford b00b777da2a89c0b2baa1ff844f71a72 SRA:SRR6213130 https://www.encodeproject.org/files/ENCFF088PXS/@@download/ENCFF088PXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF975ZQI/ released mild to moderate bottlenecking ENCFF271XXH bam unfiltered alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF088PXS, ENCFF747RJL, ENCFF807MUK 9628247198 ENCODE Processing Pipeline 42b85e7f9d820071830145743638d59d https://www.encodeproject.org/files/ENCFF271XXH/@@download/ENCFF271XXH.bam hg19 released mild to moderate bottlenecking ENCFF967VBI bam unfiltered alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF088PXS, ENCFF643CGH, ENCFF747RJL 9644247741 ENCODE Processing Pipeline 678ce1d80f74ecb6bea54c5840f42cfe https://www.encodeproject.org/files/ENCFF967VBI/@@download/ENCFF967VBI.bam GRCh38 released mild to moderate bottlenecking ENCFF323QMI bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF088PXS, ENCFF747RJL, ENCFF807MUK 7265074318 ENCODE Processing Pipeline 07a738c4f1b98faa0bb5386e3b92597c https://www.encodeproject.org/files/ENCFF323QMI/@@download/ENCFF323QMI.bam hg19 released mild to moderate bottlenecking ENCFF500VJD bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF088PXS, ENCFF643CGH, ENCFF747RJL 7276086794 ENCODE Processing Pipeline 2beb242679b11332e24e800de9463d1a https://www.encodeproject.org/files/ENCFF500VJD/@@download/ENCFF500VJD.bam GRCh38 released mild to moderate bottlenecking ENCFF681LMY fastq reads ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF202AUU 2956555867 Michael Snyder, Stanford 030dd9cb166b72573799fefce0faead5 SRA:SRR6213131 https://www.encodeproject.org/files/ENCFF681LMY/@@download/ENCFF681LMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF008KXY/ released mild to moderate bottlenecking ENCFF202AUU fastq reads ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF681LMY 2990726095 Michael Snyder, Stanford 6e48e2fe0b571eae6c543595fa63c015 SRA:SRR6213131 https://www.encodeproject.org/files/ENCFF202AUU/@@download/ENCFF202AUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF350QRO/ released mild to moderate bottlenecking ENCFF040LIW bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF500VJD, ENCFF727ZMM, ENCFF866GOS 6983037 ENCODE Processing Pipeline a7f543027993bfacff9af7933e492a60 https://www.encodeproject.org/files/ENCFF040LIW/@@download/ENCFF040LIW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF863ZTU fastq reads ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF190SME 3840320350 Michael Snyder, Stanford a1341a8dc4ac1c122f7e32bfec25c8ef SRA:SRR6213132 https://www.encodeproject.org/files/ENCFF863ZTU/@@download/ENCFF863ZTU.fastq.gz Illumina HiSeq 2000 /files/ENCFF008KXY/ released mild to moderate bottlenecking ENCFF190SME fastq reads ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF863ZTU 3845708325 Michael Snyder, Stanford 3933cf16098bd470364a8c028d7309c6 SRA:SRR6213132 https://www.encodeproject.org/files/ENCFF190SME/@@download/ENCFF190SME.fastq.gz Illumina HiSeq 2000 /files/ENCFF350QRO/ released mild to moderate bottlenecking ENCFF384TCX bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF190SME, ENCFF202AUU, ENCFF681LMY, ENCFF807MUK, ENCFF863ZTU 9951561698 ENCODE Processing Pipeline 01ec252f1a11ba6f3d4366e1788a886d https://www.encodeproject.org/files/ENCFF384TCX/@@download/ENCFF384TCX.bam hg19 released mild to moderate bottlenecking ENCFF117GZZ bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF190SME, ENCFF202AUU, ENCFF643CGH, ENCFF681LMY, ENCFF863ZTU 9974983826 ENCODE Processing Pipeline d1c5a1206ad36293c44ae5279aad5b62 https://www.encodeproject.org/files/ENCFF117GZZ/@@download/ENCFF117GZZ.bam GRCh38 released mild to moderate bottlenecking ENCFF685BTR bam unfiltered alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF190SME, ENCFF202AUU, ENCFF643CGH, ENCFF681LMY, ENCFF863ZTU 13015800612 ENCODE Processing Pipeline 3001913d0b5cb56063125f21302306ee https://www.encodeproject.org/files/ENCFF685BTR/@@download/ENCFF685BTR.bam GRCh38 released mild to moderate bottlenecking ENCFF942STY bam unfiltered alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF190SME, ENCFF202AUU, ENCFF681LMY, ENCFF807MUK, ENCFF863ZTU 12992668023 ENCODE Processing Pipeline c812c22a7d9ffc3dd633f18f6f2f4213 https://www.encodeproject.org/files/ENCFF942STY/@@download/ENCFF942STY.bam hg19 released mild to moderate bottlenecking ENCFF263EYR bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF323QMI, ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 7255396 ENCODE Processing Pipeline 53649563ab77d9608e6323efb0e256ed https://www.encodeproject.org/files/ENCFF263EYR/@@download/ENCFF263EYR.bed.gz hg19 released mild to moderate bottlenecking ENCFF223AAP bigWig signal p-value ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 2174734357 ENCODE Processing Pipeline efab33f8e94ae8cdb6850bc81d970459 https://www.encodeproject.org/files/ENCFF223AAP/@@download/ENCFF223AAP.bigWig hg19 released mild to moderate bottlenecking ENCFF930VYW bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF323QMI, ENCFF540UGI, ENCFF854RGJ 7094127 ENCODE Processing Pipeline 08c0ae92d291e5e5105db1a42cd2f62d https://www.encodeproject.org/files/ENCFF930VYW/@@download/ENCFF930VYW.bed.gz hg19 released mild to moderate bottlenecking ENCFF768XRB bigBed narrowPeak conservative idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF685MPH 1644494 ENCODE Processing Pipeline 182e33cda89b2405205b5c9a61e8fa4c https://www.encodeproject.org/files/ENCFF768XRB/@@download/ENCFF768XRB.bigBed hg19 released mild to moderate bottlenecking ENCFF530JTH bigWig fold change over control ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF323QMI, ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 4238513794 ENCODE Processing Pipeline b89e00ed63323b7222cd32e5bc78cc33 https://www.encodeproject.org/files/ENCFF530JTH/@@download/ENCFF530JTH.bigWig hg19 released mild to moderate bottlenecking ENCFF977TIL bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 7286155 ENCODE Processing Pipeline 25404fa0dc11a561d7e6993810a6909b https://www.encodeproject.org/files/ENCFF977TIL/@@download/ENCFF977TIL.bed.gz hg19 released mild to moderate bottlenecking ENCFF898OBT bigWig fold change over control ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 2534720747 ENCODE Processing Pipeline 58df8bbd69ca353a550c73ea5e4f10b1 https://www.encodeproject.org/files/ENCFF898OBT/@@download/ENCFF898OBT.bigWig hg19 released mild to moderate bottlenecking ENCFF420EHJ bigBed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF977TIL 13689042 ENCODE Processing Pipeline 1876afef77492626266215593ac4540e https://www.encodeproject.org/files/ENCFF420EHJ/@@download/ENCFF420EHJ.bigBed hg19 released mild to moderate bottlenecking ENCFF685MPH bed narrowPeak conservative idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF263EYR, ENCFF930VYW, ENCFF977TIL 811496 ENCODE Processing Pipeline e47c24c2ca9ec14792795b9b1e6d4d5c https://www.encodeproject.org/files/ENCFF685MPH/@@download/ENCFF685MPH.bed.gz hg19 released mild to moderate bottlenecking ENCFF155SPQ bed narrowPeak optimal idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF263EYR, ENCFF930VYW, ENCFF977TIL 966701 ENCODE Processing Pipeline 9e3c6202b70ffd4857cfa6a4429b30c2 https://www.encodeproject.org/files/ENCFF155SPQ/@@download/ENCFF155SPQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF906XJV bigWig signal p-value ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF323QMI, ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 2807567011 ENCODE Processing Pipeline 4dac0d12ccd8b6d13ea01b37199a5476 https://www.encodeproject.org/files/ENCFF906XJV/@@download/ENCFF906XJV.bigWig hg19 released mild to moderate bottlenecking ENCFF873PFL bigBed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF263EYR 13867152 ENCODE Processing Pipeline 3fb83145dfc9b4d4161adece2e38cfb4 https://www.encodeproject.org/files/ENCFF873PFL/@@download/ENCFF873PFL.bigBed hg19 released mild to moderate bottlenecking ENCFF545OMS bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF117GZZ, ENCFF727ZMM, ENCFF866GOS 7190282 ENCODE Processing Pipeline 89c904b2bdd5c0f9c1d1b3d44b46a32a https://www.encodeproject.org/files/ENCFF545OMS/@@download/ENCFF545OMS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF850DQJ bed narrowPeak optimal idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF040LIW, ENCFF086LAD, ENCFF419RSJ, ENCFF545OMS 948187 ENCODE Processing Pipeline c06c5b74a477c14cf7227889e493e363 https://www.encodeproject.org/files/ENCFF850DQJ/@@download/ENCFF850DQJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF536UXH bigBed narrowPeak optimal idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF155SPQ 1909046 ENCODE Processing Pipeline 296b318c1d44b2695783131820477fb0 https://www.encodeproject.org/files/ENCFF536UXH/@@download/ENCFF536UXH.bigBed hg19 released mild to moderate bottlenecking ENCFF086LAD bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF117GZZ, ENCFF500VJD, ENCFF727ZMM, ENCFF866GOS 7193365 ENCODE Processing Pipeline 3ec054ab5c6e2f75c92d18525e903018 https://www.encodeproject.org/files/ENCFF086LAD/@@download/ENCFF086LAD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF548RSI bigBed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF086LAD 13800682 ENCODE Processing Pipeline 7d6bcde5413380df774bcdcc4aa1fe87 https://www.encodeproject.org/files/ENCFF548RSI/@@download/ENCFF548RSI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF043GDK bed narrowPeak conservative idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF040LIW, ENCFF086LAD, ENCFF419RSJ, ENCFF545OMS 796207 ENCODE Processing Pipeline 14edac11d8cd05094a1f9374f69982f6 https://www.encodeproject.org/files/ENCFF043GDK/@@download/ENCFF043GDK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF734ERD bigWig fold change over control ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF117GZZ, ENCFF500VJD, ENCFF727ZMM, ENCFF866GOS 4248454417 ENCODE Processing Pipeline d28029edc5021559be19e4ed207acaa4 https://www.encodeproject.org/files/ENCFF734ERD/@@download/ENCFF734ERD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF292WTB bigBed narrowPeak conservative idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF043GDK 1619616 ENCODE Processing Pipeline f5f20022c3f703a0e867ef1c635e9561 https://www.encodeproject.org/files/ENCFF292WTB/@@download/ENCFF292WTB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF700QXT bigBed narrowPeak optimal idr thresholded peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF850DQJ 1882862 ENCODE Processing Pipeline 2f92a348d3c678bf62147371f21cff7e https://www.encodeproject.org/files/ENCFF700QXT/@@download/ENCFF700QXT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF879BWK bigWig signal p-value ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF117GZZ, ENCFF727ZMM, ENCFF866GOS 1978531840 ENCODE Processing Pipeline 487e50e06d12338b7597feaf6aca7d3e https://www.encodeproject.org/files/ENCFF879BWK/@@download/ENCFF879BWK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF325GYQ bigWig signal p-value ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF117GZZ, ENCFF500VJD, ENCFF727ZMM, ENCFF866GOS 2811900684 ENCODE Processing Pipeline fbda2eecf3a8c6d42d3885373ec11b38 https://www.encodeproject.org/files/ENCFF325GYQ/@@download/ENCFF325GYQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF053MCU bigWig fold change over control ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF117GZZ, ENCFF727ZMM, ENCFF866GOS 2534967679 ENCODE Processing Pipeline b80b1cc485b6115e600282ea86140b8d https://www.encodeproject.org/files/ENCFF053MCU/@@download/ENCFF053MCU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF944UXD bigBed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF545OMS 13593547 ENCODE Processing Pipeline e3711ee1e31215da08a3bf320316f3ac https://www.encodeproject.org/files/ENCFF944UXD/@@download/ENCFF944UXD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF300RLH fastq reads ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF956QIS 3171949682 Michael Snyder, Stanford 11a7a7105437daee6a83962b5f6eb579 SRA:SRR6213092 https://www.encodeproject.org/files/ENCFF300RLH/@@download/ENCFF300RLH.fastq.gz Illumina HiSeq 4000 /files/ENCFF213WYB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF956QIS fastq reads ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF300RLH 2577360028 Michael Snyder, Stanford 87b11add7b3ccea2d9e7b99a331200bc SRA:SRR6213092 https://www.encodeproject.org/files/ENCFF956QIS/@@download/ENCFF956QIS.fastq.gz Illumina HiSeq 4000 /files/ENCFF626FRU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF857OEH bam unfiltered alignments ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF300RLH, ENCFF643CGH, ENCFF956QIS 5333312256 ENCODE Processing Pipeline c512ba320e793156de874d24ffa17401 https://www.encodeproject.org/files/ENCFF857OEH/@@download/ENCFF857OEH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF623ZAO bam unfiltered alignments ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF300RLH, ENCFF807MUK, ENCFF956QIS 5328282287 ENCODE Processing Pipeline 09e0f406eb8c6cef466067cb5cb6c4a2 https://www.encodeproject.org/files/ENCFF623ZAO/@@download/ENCFF623ZAO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF007NAL bam alignments ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF300RLH, ENCFF643CGH, ENCFF956QIS 3401176283 ENCODE Processing Pipeline 4c5a470a76e477260ca9b2a402bd514a https://www.encodeproject.org/files/ENCFF007NAL/@@download/ENCFF007NAL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF936KYO bam alignments ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF300RLH, ENCFF807MUK, ENCFF956QIS 3399433783 ENCODE Processing Pipeline a8fccde071ceac8828343df4db68ed1d https://www.encodeproject.org/files/ENCFF936KYO/@@download/ENCFF936KYO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF040VPH bigWig signal p-value ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF735RKK, ENCFF936KYO 962562448 ENCODE Processing Pipeline 546befb93b992cb5464b17a918de1974 https://www.encodeproject.org/files/ENCFF040VPH/@@download/ENCFF040VPH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF868GZU bigBed narrowPeak peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF174XDP 13354114 ENCODE Processing Pipeline a4835c6a249a6bb8a49b3cf2e05d929a https://www.encodeproject.org/files/ENCFF868GZU/@@download/ENCFF868GZU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF174XDP bed narrowPeak peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF735RKK, ENCFF936KYO 6794263 ENCODE Processing Pipeline 5ecaf7343b1747ee9c455e9d312834af https://www.encodeproject.org/files/ENCFF174XDP/@@download/ENCFF174XDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF252FBJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF174XDP 584767 ENCODE Processing Pipeline 63a86921024d458fb636626402618151 https://www.encodeproject.org/files/ENCFF252FBJ/@@download/ENCFF252FBJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF026EAA bigWig fold change over control ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF735RKK, ENCFF936KYO 1144852972 ENCODE Processing Pipeline 93ac8362ecfc5a0b0e3a26a71a57098d https://www.encodeproject.org/files/ENCFF026EAA/@@download/ENCFF026EAA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF843IZU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF252FBJ 1301742 ENCODE Processing Pipeline ec880d5467ec28498807913b30000542 https://www.encodeproject.org/files/ENCFF843IZU/@@download/ENCFF843IZU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF301HAY bigWig signal p-value ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF007NAL, ENCFF801GEF 1233310162 ENCODE Processing Pipeline 78173c097bc3f8dfa0cad6d60366d9bf https://www.encodeproject.org/files/ENCFF301HAY/@@download/ENCFF301HAY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF440SDS bigWig fold change over control ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF007NAL, ENCFF801GEF 1139322664 ENCODE Processing Pipeline 8b6c81689aa357c6e3af05364a8a8591 https://www.encodeproject.org/files/ENCFF440SDS/@@download/ENCFF440SDS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF176ZCA bed narrowPeak peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF007NAL, ENCFF801GEF 6801846 ENCODE Processing Pipeline 1381c66cfbfffe473ca285d1f0a58f71 https://www.encodeproject.org/files/ENCFF176ZCA/@@download/ENCFF176ZCA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF311JAA bigBed narrowPeak peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF176ZCA 13374331 ENCODE Processing Pipeline 37ee43811c8679bdb51b1a800690b20c https://www.encodeproject.org/files/ENCFF311JAA/@@download/ENCFF311JAA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF328POY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF089XKW 1330404 ENCODE Processing Pipeline ebc37a4d091cb05ee4d2752794834e1d https://www.encodeproject.org/files/ENCFF328POY/@@download/ENCFF328POY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF089XKW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF176ZCA, ENCFF419RSJ 601724 ENCODE Processing Pipeline a9737623cbba3b1ae2b4fa19b6df768c https://www.encodeproject.org/files/ENCFF089XKW/@@download/ENCFF089XKW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF095XXT fastq reads ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1273925055 Richard Myers, HAIB fafe31aef53394aa13790b3e39ba3dd5 SRA:SRR5338963 https://www.encodeproject.org/files/ENCFF095XXT/@@download/ENCFF095XXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF272TAW fastq reads ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1600255076 Richard Myers, HAIB 7406d4bffa7685ed0feb0b55735a3003 SRA:SRR5338962 https://www.encodeproject.org/files/ENCFF272TAW/@@download/ENCFF272TAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF971DVJ bam unfiltered alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 76 ENCFF095XXT, ENCFF643CGH 1378294761 ENCODE Processing Pipeline d39a22f20825a958f2c89df0d8795ec7 https://www.encodeproject.org/files/ENCFF971DVJ/@@download/ENCFF971DVJ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF641NDW bam unfiltered alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 76 ENCFF272TAW, ENCFF643CGH 1807155258 ENCODE Processing Pipeline 0e4670bd61f0ba1d1cd417e1f259f21d https://www.encodeproject.org/files/ENCFF641NDW/@@download/ENCFF641NDW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685YNH bam unfiltered alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 76 ENCFF095XXT, ENCFF807MUK 1374434579 ENCODE Processing Pipeline dd37b97467d1fe7e9338c675ddc80a3c https://www.encodeproject.org/files/ENCFF685YNH/@@download/ENCFF685YNH.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530UBB bam unfiltered alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 76 ENCFF272TAW, ENCFF807MUK 1801692587 ENCODE Processing Pipeline 5cf8df457ea10841cc1d5ae1552e4165 https://www.encodeproject.org/files/ENCFF530UBB/@@download/ENCFF530UBB.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF060HQQ bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 76 ENCFF095XXT, ENCFF643CGH 1025033935 ENCODE Processing Pipeline bf6cd23c39fea99b0bff79620cb4bd9e https://www.encodeproject.org/files/ENCFF060HQQ/@@download/ENCFF060HQQ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF019FLT bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 76 ENCFF095XXT, ENCFF807MUK 1024240981 ENCODE Processing Pipeline ae62f42f0a36d83fabf2e5289298318c https://www.encodeproject.org/files/ENCFF019FLT/@@download/ENCFF019FLT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF104USR bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 76 ENCFF272TAW, ENCFF807MUK 1371233008 ENCODE Processing Pipeline db4a1586c2def47bf1402358104b1a7c https://www.encodeproject.org/files/ENCFF104USR/@@download/ENCFF104USR.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304FMS bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 76 ENCFF272TAW, ENCFF643CGH 1372373143 ENCODE Processing Pipeline f5430cd6729bf638433f99e7313375ab https://www.encodeproject.org/files/ENCFF304FMS/@@download/ENCFF304FMS.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF268JCN bigWig signal p-value ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF060HQQ 476203720 ENCODE Processing Pipeline 038962cb5492c90abf375dda192523d6 https://www.encodeproject.org/files/ENCFF268JCN/@@download/ENCFF268JCN.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF650NLN bigWig signal p-value ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF304FMS 639744373 ENCODE Processing Pipeline eb1b160621a01e31cd4e152a6a1ab31d https://www.encodeproject.org/files/ENCFF650NLN/@@download/ENCFF650NLN.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF487AVQ bigWig signal p-value ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF060HQQ, ENCFF304FMS 643610107 ENCODE Processing Pipeline c42eefe94969386c2e0c22b840d92bfd https://www.encodeproject.org/files/ENCFF487AVQ/@@download/ENCFF487AVQ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF209WPQ bigWig fold change over control ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF060HQQ 406492718 ENCODE Processing Pipeline 6d178ba672dfbc21d1a882aed22c6799 https://www.encodeproject.org/files/ENCFF209WPQ/@@download/ENCFF209WPQ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF215UXD bigWig fold change over control ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF304FMS 529974513 ENCODE Processing Pipeline 654082ff6c9b68ed17950d1b432d9928 https://www.encodeproject.org/files/ENCFF215UXD/@@download/ENCFF215UXD.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126BUH bigWig fold change over control ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF060HQQ, ENCFF304FMS 797376033 ENCODE Processing Pipeline c96bd18a0e4c5703bf0dc61df37c62b3 https://www.encodeproject.org/files/ENCFF126BUH/@@download/ENCFF126BUH.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF650MCR bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF060HQQ 5297075 ENCODE Processing Pipeline e52c5c375b5176720cd30d90f7751723 https://www.encodeproject.org/files/ENCFF650MCR/@@download/ENCFF650MCR.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF782TPS bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF304FMS 5720672 ENCODE Processing Pipeline b390a798041677be92cc3c8e1ce4275c https://www.encodeproject.org/files/ENCFF782TPS/@@download/ENCFF782TPS.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF890SZN bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF060HQQ, ENCFF304FMS 6342359 ENCODE Processing Pipeline 48d4bd678d38ac29be6a5226a9463625 https://www.encodeproject.org/files/ENCFF890SZN/@@download/ENCFF890SZN.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF745ZGN bigBed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF650MCR 10995584 ENCODE Processing Pipeline 09322c635a7a29143c5aa891e3505d4c https://www.encodeproject.org/files/ENCFF745ZGN/@@download/ENCFF745ZGN.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF083SKJ bigBed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF782TPS 13290179 ENCODE Processing Pipeline d6e50034440c52ca96acf185ff6c00dd https://www.encodeproject.org/files/ENCFF083SKJ/@@download/ENCFF083SKJ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF623COM bed narrowPeak optimal idr thresholded peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF650MCR, ENCFF782TPS, ENCFF890SZN 408722 ENCODE Processing Pipeline 1cb44a831a1107b2274f554ada4a3871 https://www.encodeproject.org/files/ENCFF623COM/@@download/ENCFF623COM.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF169VVY bigBed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF890SZN 13369846 ENCODE Processing Pipeline f32768c21061c8e0ea29dfa5bd0023a4 https://www.encodeproject.org/files/ENCFF169VVY/@@download/ENCFF169VVY.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF163BAD bigBed narrowPeak optimal idr thresholded peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF623COM 696642 ENCODE Processing Pipeline 394eecaf6b10655cfe88ba057ac41d79 https://www.encodeproject.org/files/ENCFF163BAD/@@download/ENCFF163BAD.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF973PYC bigWig signal p-value ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF104USR, ENCFF203ABR 1323059161 ENCODE Processing Pipeline a9be2e28b9a6aba6adb5ffad97d5f004 https://www.encodeproject.org/files/ENCFF973PYC/@@download/ENCFF973PYC.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF886BLY bigWig signal p-value ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF019FLT, ENCFF203ABR 1151937741 ENCODE Processing Pipeline 504119f6eca14f11fa5c2d37d8ca4e0a https://www.encodeproject.org/files/ENCFF886BLY/@@download/ENCFF886BLY.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF038XGD bigWig signal p-value ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF019FLT, ENCFF104USR, ENCFF203ABR 1465867871 ENCODE Processing Pipeline 81d20596bd79261005dd78187aaba311 https://www.encodeproject.org/files/ENCFF038XGD/@@download/ENCFF038XGD.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF101CTF bigWig fold change over control ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF019FLT, ENCFF203ABR 755070134 ENCODE Processing Pipeline f21aac3117b5ccf0ecd0a6388b46cec6 https://www.encodeproject.org/files/ENCFF101CTF/@@download/ENCFF101CTF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF242SPY bigWig fold change over control ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF104USR, ENCFF203ABR 935059414 ENCODE Processing Pipeline 80555d65b79a3435c3d5e16ea4146ee1 https://www.encodeproject.org/files/ENCFF242SPY/@@download/ENCFF242SPY.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649PVC bigWig fold change over control ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF019FLT, ENCFF104USR, ENCFF203ABR 1386816930 ENCODE Processing Pipeline a0f0a3b6ff99f84746e0cb16c578d245 https://www.encodeproject.org/files/ENCFF649PVC/@@download/ENCFF649PVC.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF701KPJ bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF104USR, ENCFF203ABR 6393381 ENCODE Processing Pipeline d1a2ec724e0581eff34cc052dd5e9700 https://www.encodeproject.org/files/ENCFF701KPJ/@@download/ENCFF701KPJ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362LIP bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF019FLT, ENCFF203ABR 6115184 ENCODE Processing Pipeline 3fce1cce4b4989ec0e2c354bbd886e4b https://www.encodeproject.org/files/ENCFF362LIP/@@download/ENCFF362LIP.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF042YBV bigBed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF362LIP 13347063 ENCODE Processing Pipeline 053b17380705245f41f677da6dbb221e https://www.encodeproject.org/files/ENCFF042YBV/@@download/ENCFF042YBV.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF246CXS bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF019FLT, ENCFF104USR, ENCFF203ABR 6842448 ENCODE Processing Pipeline e5c3455723b930752840234db4464be3 https://www.encodeproject.org/files/ENCFF246CXS/@@download/ENCFF246CXS.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF210KUI bigBed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF246CXS 13355888 ENCODE Processing Pipeline 1fd5aeb27c9f4a93dd767d4a9c4db1f6 https://www.encodeproject.org/files/ENCFF210KUI/@@download/ENCFF210KUI.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF951QQD bigBed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF701KPJ 13383605 ENCODE Processing Pipeline 8b3fdc1b35d69f08bd2bb2353269fd7f https://www.encodeproject.org/files/ENCFF951QQD/@@download/ENCFF951QQD.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF822WCE bed narrowPeak conservative idr thresholded peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF246CXS, ENCFF362LIP, ENCFF701KPJ 376752 ENCODE Processing Pipeline dff3db890c1d9d461a5ac8977e74dba6 https://www.encodeproject.org/files/ENCFF822WCE/@@download/ENCFF822WCE.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF679PRJ bigBed narrowPeak conservative idr thresholded peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF822WCE 669173 ENCODE Processing Pipeline aa43e915841056d0740d53fed21dfa4b https://www.encodeproject.org/files/ENCFF679PRJ/@@download/ENCFF679PRJ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF714HWJ bed narrowPeak optimal idr thresholded peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF246CXS, ENCFF362LIP, ENCFF701KPJ 382754 ENCODE Processing Pipeline 68326637a68025a67960362ae8e917af https://www.encodeproject.org/files/ENCFF714HWJ/@@download/ENCFF714HWJ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF771ACE bigBed narrowPeak optimal idr thresholded peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF714HWJ 676829 ENCODE Processing Pipeline 14ed86c8ae00299157ff33eb55bb058b https://www.encodeproject.org/files/ENCFF771ACE/@@download/ENCFF771ACE.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF679FOL bam unfiltered alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF697NYE, ENCFF807MUK 914866734 ENCODE Processing Pipeline 4fd7e736e019fef08715f30469137b67 https://www.encodeproject.org/files/ENCFF679FOL/@@download/ENCFF679FOL.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF414WSN bam unfiltered alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF260FBF, ENCFF807MUK 891463603 ENCODE Processing Pipeline 68eec7d4205c646fc0b6bc1096f778c1 https://www.encodeproject.org/files/ENCFF414WSN/@@download/ENCFF414WSN.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF697NYE fastq reads ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 813478153 Richard Myers, HAIB 852e10b882338beb5b138b7549226b71 SRA:SRR5339061 https://www.encodeproject.org/files/ENCFF697NYE/@@download/ENCFF697NYE.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF260FBF fastq reads ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 785986476 Richard Myers, HAIB bb3bbd4b79cf7bc08a58d03fa26e6284 SRA:SRR5339060 https://www.encodeproject.org/files/ENCFF260FBF/@@download/ENCFF260FBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF998QTY bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF260FBF, ENCFF807MUK 669083768 ENCODE Processing Pipeline 270c18075e14173932a0989a3c32d3de https://www.encodeproject.org/files/ENCFF998QTY/@@download/ENCFF998QTY.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF431UUS bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF697NYE, ENCFF807MUK 688291916 ENCODE Processing Pipeline 7f13e03a5e36a2ba69528b06934dd045 https://www.encodeproject.org/files/ENCFF431UUS/@@download/ENCFF431UUS.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF324OXP bigWig fold change over control ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF998QTY 284328699 ENCODE Processing Pipeline 001e3576f73560afaeabf64ab4e407ca https://www.encodeproject.org/files/ENCFF324OXP/@@download/ENCFF324OXP.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF033FPH bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF431UUS 5772340 ENCODE Processing Pipeline 39683ebee60031adbe311d028e998ee2 https://www.encodeproject.org/files/ENCFF033FPH/@@download/ENCFF033FPH.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF257TGS bigWig signal p-value ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF431UUS 357266202 ENCODE Processing Pipeline 7ac63c564644351edcf491e36cca3902 https://www.encodeproject.org/files/ENCFF257TGS/@@download/ENCFF257TGS.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF017XBA bigWig signal p-value ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF998QTY 466465629 ENCODE Processing Pipeline bae169f9cade7ee43987c5213e280a8d https://www.encodeproject.org/files/ENCFF017XBA/@@download/ENCFF017XBA.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF616MNO bigWig signal p-value ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF431UUS, ENCFF998QTY 452281261 ENCODE Processing Pipeline 20b4f1431384f3446bb434b3f362e52f https://www.encodeproject.org/files/ENCFF616MNO/@@download/ENCFF616MNO.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF321CVZ bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF998QTY 5704291 ENCODE Processing Pipeline 3a4a420538d55f87d738e99cc9182c37 https://www.encodeproject.org/files/ENCFF321CVZ/@@download/ENCFF321CVZ.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF216XJM bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF431UUS, ENCFF998QTY 6582693 ENCODE Processing Pipeline 1ad7135f68daaa9c5045222c4fa8a456 https://www.encodeproject.org/files/ENCFF216XJM/@@download/ENCFF216XJM.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF548UXD bigBed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF033FPH 12984892 ENCODE Processing Pipeline d40a16fbf056e1dbad208036fbfee92d https://www.encodeproject.org/files/ENCFF548UXD/@@download/ENCFF548UXD.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF323JMT bigBed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF321CVZ 12970081 ENCODE Processing Pipeline e06fc6acd5f130f662c67651b684a5dd https://www.encodeproject.org/files/ENCFF323JMT/@@download/ENCFF323JMT.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF962RQU bigBed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF216XJM 13015417 ENCODE Processing Pipeline 1d949faace9161ad81e232852fb080e7 https://www.encodeproject.org/files/ENCFF962RQU/@@download/ENCFF962RQU.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF086NPR bigWig fold change over control ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF431UUS 299650336 ENCODE Processing Pipeline 3b1b45908558ed419f013655b0c5caa0 https://www.encodeproject.org/files/ENCFF086NPR/@@download/ENCFF086NPR.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF977MSQ bigWig fold change over control ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF431UUS, ENCFF998QTY 530980846 ENCODE Processing Pipeline 6e786e957c5937c22080dad26c5c7319 https://www.encodeproject.org/files/ENCFF977MSQ/@@download/ENCFF977MSQ.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF104YWL bed narrowPeak optimal idr thresholded peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF033FPH, ENCFF216XJM, ENCFF321CVZ 277454 ENCODE Processing Pipeline a50703f33fc1527de3069617ddc8f8e1 https://www.encodeproject.org/files/ENCFF104YWL/@@download/ENCFF104YWL.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF248QXC bigBed narrowPeak optimal idr thresholded peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF104YWL 583236 ENCODE Processing Pipeline da960a743f9df494a0a3c8974af61187 https://www.encodeproject.org/files/ENCFF248QXC/@@download/ENCFF248QXC.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF682HTY bed narrowPeak conservative idr thresholded peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF033FPH, ENCFF216XJM, ENCFF321CVZ 261559 ENCODE Processing Pipeline 56a27d0d26012d331e05e7373e332d14 https://www.encodeproject.org/files/ENCFF682HTY/@@download/ENCFF682HTY.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF771BLM bigBed narrowPeak conservative idr thresholded peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF682HTY 557301 ENCODE Processing Pipeline 2d28238ca94c507eecc9f4ef8d7802a3 https://www.encodeproject.org/files/ENCFF771BLM/@@download/ENCFF771BLM.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF531DHY bam unfiltered alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF260FBF, ENCFF643CGH 894386513 ENCODE Processing Pipeline bfe28dcded376d854de8a20ec2f4b938 https://www.encodeproject.org/files/ENCFF531DHY/@@download/ENCFF531DHY.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF612BOB bam unfiltered alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF697NYE 917713920 ENCODE Processing Pipeline e25953cb78f135fed92fa1aaa3187d77 https://www.encodeproject.org/files/ENCFF612BOB/@@download/ENCFF612BOB.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF238MUN bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF260FBF, ENCFF643CGH 668966183 ENCODE Processing Pipeline b41302d4970f8f36da474d4ba798dba1 https://www.encodeproject.org/files/ENCFF238MUN/@@download/ENCFF238MUN.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF684QYE bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF697NYE 688163437 ENCODE Processing Pipeline db3862aae93f1e435c6780b5c31c3145 https://www.encodeproject.org/files/ENCFF684QYE/@@download/ENCFF684QYE.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF797WCG bigWig signal p-value ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF238MUN, ENCFF582CVJ 426826706 ENCODE Processing Pipeline a16de53387bdc3448d2cfbdd5934e019 https://www.encodeproject.org/files/ENCFF797WCG/@@download/ENCFF797WCG.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF041FWV bigWig signal p-value ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF238MUN, ENCFF582CVJ, ENCFF684QYE 449118714 ENCODE Processing Pipeline 4bcca33181dcb8b6313013fe0aa9042b https://www.encodeproject.org/files/ENCFF041FWV/@@download/ENCFF041FWV.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF143UMJ bigWig signal p-value ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF582CVJ, ENCFF684QYE 360396291 ENCODE Processing Pipeline c27e1c4464feb52477fae36645b3eaa4 https://www.encodeproject.org/files/ENCFF143UMJ/@@download/ENCFF143UMJ.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF658GJX bigWig fold change over control ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF582CVJ, ENCFF684QYE 300251488 ENCODE Processing Pipeline 92f500801e3ac151b46204b36f165961 https://www.encodeproject.org/files/ENCFF658GJX/@@download/ENCFF658GJX.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF648KAV bigWig fold change over control ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF238MUN, ENCFF582CVJ, ENCFF684QYE 519603313 ENCODE Processing Pipeline 31c08bc65143f803a7c886ce9ce48f9a https://www.encodeproject.org/files/ENCFF648KAV/@@download/ENCFF648KAV.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF674ZEE bigWig fold change over control ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF238MUN, ENCFF582CVJ 294780204 ENCODE Processing Pipeline 7c73eab68720783e71d440278cc8868a https://www.encodeproject.org/files/ENCFF674ZEE/@@download/ENCFF674ZEE.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF803QBG bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF238MUN, ENCFF582CVJ 5576011 ENCODE Processing Pipeline 5ed56f858dd89b356d9a1bfe09bd37fb https://www.encodeproject.org/files/ENCFF803QBG/@@download/ENCFF803QBG.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF889YMR bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF238MUN, ENCFF582CVJ, ENCFF684QYE 6357492 ENCODE Processing Pipeline 021e9cc9006edbe78b61b61243410013 https://www.encodeproject.org/files/ENCFF889YMR/@@download/ENCFF889YMR.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF616EFB bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF582CVJ, ENCFF684QYE 5625225 ENCODE Processing Pipeline 6577ee32e8ae74255e911ca8ff0945aa https://www.encodeproject.org/files/ENCFF616EFB/@@download/ENCFF616EFB.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF618XMR bigBed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF889YMR 13013482 ENCODE Processing Pipeline 48b1dd2f3addbf34d383d7a648b1b7d0 https://www.encodeproject.org/files/ENCFF618XMR/@@download/ENCFF618XMR.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF894AWT bed narrowPeak optimal idr thresholded peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF616EFB, ENCFF803QBG, ENCFF889YMR 271769 ENCODE Processing Pipeline 7f336872fcf0ecec2bda327fb60c37ce https://www.encodeproject.org/files/ENCFF894AWT/@@download/ENCFF894AWT.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF824LEM bigBed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF616EFB 12931969 ENCODE Processing Pipeline aab28cfd417eabaae66bc4f8f62a52b0 https://www.encodeproject.org/files/ENCFF824LEM/@@download/ENCFF824LEM.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF451DPQ bigBed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF803QBG 12948916 ENCODE Processing Pipeline 4b7363929fd2aece35650a08f834d368 https://www.encodeproject.org/files/ENCFF451DPQ/@@download/ENCFF451DPQ.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF774SYH bigBed narrowPeak optimal idr thresholded peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF894AWT 575138 ENCODE Processing Pipeline c96ec3e585a06ec1eb2aa272bfd85c26 https://www.encodeproject.org/files/ENCFF774SYH/@@download/ENCFF774SYH.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF811IJJ fastq reads ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 1 100 paired-ended 1 ENCFF489XKU 4583532447 Michael Snyder, Stanford 79da781a5ba7e02f41624391e005b926 SRA:SRR6213227 https://www.encodeproject.org/files/ENCFF811IJJ/@@download/ENCFF811IJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF889CFT/ released NTR biosample ENCFF489XKU fastq reads ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 1 100 paired-ended 2 ENCFF811IJJ 4626624259 Michael Snyder, Stanford 178796e67dc52f1401d8c5c603b6bbc0 SRA:SRR6213227 https://www.encodeproject.org/files/ENCFF489XKU/@@download/ENCFF489XKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF797ZPJ/ released NTR biosample ENCFF806YJG bam unfiltered alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 100 ENCFF489XKU, ENCFF643CGH, ENCFF811IJJ 8892865979 ENCODE Processing Pipeline 4808de1ffe756d92340602d81a92d405 https://www.encodeproject.org/files/ENCFF806YJG/@@download/ENCFF806YJG.bam GRCh38 released NTR biosample ENCFF544AYQ bam unfiltered alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 100 ENCFF489XKU, ENCFF807MUK, ENCFF811IJJ 8889563983 ENCODE Processing Pipeline 63b6046e5d8434569dd72ebfa5896787 https://www.encodeproject.org/files/ENCFF544AYQ/@@download/ENCFF544AYQ.bam hg19 released NTR biosample ENCFF928HGU bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 100 ENCFF489XKU, ENCFF643CGH, ENCFF811IJJ 6877429169 ENCODE Processing Pipeline 88ce46251c4c179cb5d37b841441ad75 https://www.encodeproject.org/files/ENCFF928HGU/@@download/ENCFF928HGU.bam GRCh38 released NTR biosample ENCFF939HKH bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 100 ENCFF489XKU, ENCFF807MUK, ENCFF811IJJ 6868660915 ENCODE Processing Pipeline 793c13a6d4554e9c5dd54f5aaccb63b7 https://www.encodeproject.org/files/ENCFF939HKH/@@download/ENCFF939HKH.bam hg19 released NTR biosample ENCFF223VZW fastq reads ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 1 101 paired-ended 1 ENCFF792PVA 7116384320 Michael Snyder, Stanford 7b5f54dd9999467274bce45bdba9714b SRA:SRR6213226 https://www.encodeproject.org/files/ENCFF223VZW/@@download/ENCFF223VZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF943CMT/ released NTR biosample ENCFF792PVA fastq reads ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 1 101 paired-ended 2 ENCFF223VZW 7303247385 Michael Snyder, Stanford 05118859f0c3725960ff3f0f71035cc1 SRA:SRR6213226 https://www.encodeproject.org/files/ENCFF792PVA/@@download/ENCFF792PVA.fastq.gz Illumina HiSeq 2000 /files/ENCFF766ORZ/ released NTR biosample ENCFF502IAM bam unfiltered alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 101 ENCFF223VZW, ENCFF792PVA, ENCFF807MUK 13761455834 ENCODE Processing Pipeline ce2c379656bab7c8b4d231bd7460a26e https://www.encodeproject.org/files/ENCFF502IAM/@@download/ENCFF502IAM.bam hg19 released NTR biosample ENCFF163GGL bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 101 ENCFF223VZW, ENCFF792PVA, ENCFF807MUK 11053301127 ENCODE Processing Pipeline 47ff90295be4728a1045298875bc9fa7 https://www.encodeproject.org/files/ENCFF163GGL/@@download/ENCFF163GGL.bam hg19 released NTR biosample ENCFF144EHH bam unfiltered alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 101 ENCFF223VZW, ENCFF643CGH, ENCFF792PVA 13786485373 ENCODE Processing Pipeline 312cfbb78c4a5208e633453283735a29 https://www.encodeproject.org/files/ENCFF144EHH/@@download/ENCFF144EHH.bam GRCh38 released NTR biosample ENCFF092CVQ bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 101 ENCFF223VZW, ENCFF643CGH, ENCFF792PVA 11068159225 ENCODE Processing Pipeline 585580e0edd8ea49834ee7806a3df4b6 https://www.encodeproject.org/files/ENCFF092CVQ/@@download/ENCFF092CVQ.bam GRCh38 released NTR biosample ENCFF841AWR bigWig signal p-value ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 1416466501 ENCODE Processing Pipeline 39c4c6a35c9246c626d2fec657795ac8 https://www.encodeproject.org/files/ENCFF841AWR/@@download/ENCFF841AWR.bigWig hg19 released NTR biosample ENCFF372WBG bigWig fold change over control ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 1607918598 ENCODE Processing Pipeline ca965b2e57608a850f308b8c21565723 https://www.encodeproject.org/files/ENCFF372WBG/@@download/ENCFF372WBG.bigWig hg19 released NTR biosample ENCFF417FWB bigWig signal p-value ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF163GGL, ENCFF856NHW, ENCFF959SRT 2204995224 ENCODE Processing Pipeline 7ad3548970b53e5a6695f0f1d76a5c0d https://www.encodeproject.org/files/ENCFF417FWB/@@download/ENCFF417FWB.bigWig hg19 released NTR biosample ENCFF672VZN bigWig signal p-value ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF163GGL, ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 2199087378 ENCODE Processing Pipeline 1429f725fb77b0a1f1a56ca04c1ba3ae https://www.encodeproject.org/files/ENCFF672VZN/@@download/ENCFF672VZN.bigWig hg19 released NTR biosample ENCFF590QWW bigWig fold change over control ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF163GGL, ENCFF856NHW, ENCFF959SRT 2292609404 ENCODE Processing Pipeline dfcc7645a16af039d8e52e87d2925a25 https://www.encodeproject.org/files/ENCFF590QWW/@@download/ENCFF590QWW.bigWig hg19 released NTR biosample ENCFF110QAF bigWig fold change over control ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF163GGL, ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 2817201758 ENCODE Processing Pipeline b9e243ddf85970f49936682288153c1e https://www.encodeproject.org/files/ENCFF110QAF/@@download/ENCFF110QAF.bigWig hg19 released NTR biosample ENCFF437EHR bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 7173496 ENCODE Processing Pipeline 31d7c7670f8a008fd471db75b400eb57 https://www.encodeproject.org/files/ENCFF437EHR/@@download/ENCFF437EHR.bed.gz hg19 released NTR biosample ENCFF939NVJ bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF163GGL, ENCFF856NHW, ENCFF959SRT 7380980 ENCODE Processing Pipeline 430d90feeb8cae901aa113f765b5c2f2 https://www.encodeproject.org/files/ENCFF939NVJ/@@download/ENCFF939NVJ.bed.gz hg19 released NTR biosample ENCFF610MUA bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF163GGL, ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 7349662 ENCODE Processing Pipeline 402e974e1740029a34629352729705c4 https://www.encodeproject.org/files/ENCFF610MUA/@@download/ENCFF610MUA.bed.gz hg19 released NTR biosample ENCFF094AGK bigBed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF437EHR 12546228 ENCODE Processing Pipeline 14a1c6fade8d53cb46545655faacf10f https://www.encodeproject.org/files/ENCFF094AGK/@@download/ENCFF094AGK.bigBed hg19 released NTR biosample ENCFF024YNG bigBed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF939NVJ 13220883 ENCODE Processing Pipeline d97aa1450cb0d31e533ef90baba91c2d https://www.encodeproject.org/files/ENCFF024YNG/@@download/ENCFF024YNG.bigBed hg19 released NTR biosample ENCFF644PMT bigBed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF610MUA 13153276 ENCODE Processing Pipeline 392468679d010a141808d16c5fdc1000 https://www.encodeproject.org/files/ENCFF644PMT/@@download/ENCFF644PMT.bigBed hg19 released NTR biosample ENCFF335OHP bed narrowPeak conservative idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF001TDO, ENCFF437EHR, ENCFF610MUA, ENCFF939NVJ 295467 ENCODE Processing Pipeline b2538a9b4f8bd89e167dd31c3efc3c9e https://www.encodeproject.org/files/ENCFF335OHP/@@download/ENCFF335OHP.bed.gz hg19 released NTR biosample ENCFF605EOI bigBed narrowPeak conservative idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF335OHP 826889 ENCODE Processing Pipeline f08c579f7c52674fccf09a42b3653cdc https://www.encodeproject.org/files/ENCFF605EOI/@@download/ENCFF605EOI.bigBed hg19 released NTR biosample ENCFF144BSH bed narrowPeak optimal idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF001TDO, ENCFF437EHR, ENCFF610MUA, ENCFF939NVJ 446793 ENCODE Processing Pipeline 136660c4dfc08cf2e1a901894c44e523 https://www.encodeproject.org/files/ENCFF144BSH/@@download/ENCFF144BSH.bed.gz hg19 released NTR biosample ENCFF321JKF bigBed narrowPeak optimal idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF144BSH 1186605 ENCODE Processing Pipeline da4750ac26171c2cabce6ca36de4e1f4 https://www.encodeproject.org/files/ENCFF321JKF/@@download/ENCFF321JKF.bigBed hg19 released NTR biosample ENCFF311XMJ bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF092CVQ, ENCFF205UVR, ENCFF489VMD, ENCFF928HGU 7303769 ENCODE Processing Pipeline 01f9deab804fddec70c3535a1f1d173d https://www.encodeproject.org/files/ENCFF311XMJ/@@download/ENCFF311XMJ.bed.gz GRCh38 released NTR biosample ENCFF508XYJ bigBed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF311XMJ 13104756 ENCODE Processing Pipeline 5eb93139235b6384c55e10df5ed39e90 https://www.encodeproject.org/files/ENCFF508XYJ/@@download/ENCFF508XYJ.bigBed GRCh38 released NTR biosample ENCFF897IRP bed narrowPeak conservative idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF311XMJ, ENCFF419RSJ, ENCFF524WKI, ENCFF600YPZ 281921 ENCODE Processing Pipeline b03996e54e73bfa5e776e21e581ae72e https://www.encodeproject.org/files/ENCFF897IRP/@@download/ENCFF897IRP.bed.gz GRCh38 released NTR biosample ENCFF653AEH bigBed narrowPeak conservative idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF897IRP 808714 ENCODE Processing Pipeline 4f8f0e66e910fb6e154777e14b20173a https://www.encodeproject.org/files/ENCFF653AEH/@@download/ENCFF653AEH.bigBed GRCh38 released NTR biosample ENCFF215SIC bed narrowPeak optimal idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF311XMJ, ENCFF419RSJ, ENCFF524WKI, ENCFF600YPZ 425026 ENCODE Processing Pipeline 0ef9151544fd3d5168e93e000c481ea3 https://www.encodeproject.org/files/ENCFF215SIC/@@download/ENCFF215SIC.bed.gz GRCh38 released NTR biosample ENCFF696ZXH bigWig signal p-value ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF205UVR, ENCFF489VMD, ENCFF928HGU 1598382124 ENCODE Processing Pipeline f9a01483926ca5778768071471daa99e https://www.encodeproject.org/files/ENCFF696ZXH/@@download/ENCFF696ZXH.bigWig GRCh38 released NTR biosample ENCFF947WGK bigWig fold change over control ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF205UVR, ENCFF489VMD, ENCFF928HGU 1602606235 ENCODE Processing Pipeline 4e959359e2afd05e7517c02444e7647a https://www.encodeproject.org/files/ENCFF947WGK/@@download/ENCFF947WGK.bigWig GRCh38 released NTR biosample ENCFF901PII bigWig signal p-value ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF092CVQ, ENCFF205UVR, ENCFF489VMD 2210544219 ENCODE Processing Pipeline 5bbacf696c5a0aedad782245f18fedfa https://www.encodeproject.org/files/ENCFF901PII/@@download/ENCFF901PII.bigWig GRCh38 released NTR biosample ENCFF904YEG bigWig fold change over control ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF092CVQ, ENCFF205UVR, ENCFF489VMD 2295803513 ENCODE Processing Pipeline 0d521fa0a3dce88b4166b782364b9828 https://www.encodeproject.org/files/ENCFF904YEG/@@download/ENCFF904YEG.bigWig GRCh38 released NTR biosample ENCFF168KEG bigWig fold change over control ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF092CVQ, ENCFF205UVR, ENCFF489VMD, ENCFF928HGU 2820699772 ENCODE Processing Pipeline ab0be210063294712efbfaf748a58de7 https://www.encodeproject.org/files/ENCFF168KEG/@@download/ENCFF168KEG.bigWig GRCh38 released NTR biosample ENCFF524WKI bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF092CVQ, ENCFF205UVR, ENCFF489VMD 7396530 ENCODE Processing Pipeline 8f0914e2f04a07877d6f9bb3a03cbccf https://www.encodeproject.org/files/ENCFF524WKI/@@download/ENCFF524WKI.bed.gz GRCh38 released NTR biosample ENCFF619PUO bigBed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF524WKI 13248823 ENCODE Processing Pipeline f7f40f938bdf0c012e7ed39cc81417e5 https://www.encodeproject.org/files/ENCFF619PUO/@@download/ENCFF619PUO.bigBed GRCh38 released NTR biosample ENCFF869KYD bigWig signal p-value ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF092CVQ, ENCFF205UVR, ENCFF489VMD, ENCFF928HGU 2216118975 ENCODE Processing Pipeline db7f41503297f01745b3479235e15a42 https://www.encodeproject.org/files/ENCFF869KYD/@@download/ENCFF869KYD.bigWig GRCh38 released NTR biosample ENCFF600YPZ bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF205UVR, ENCFF489VMD, ENCFF928HGU 7121334 ENCODE Processing Pipeline 3112833e9724ca1ab2c836a16d78366e https://www.encodeproject.org/files/ENCFF600YPZ/@@download/ENCFF600YPZ.bed.gz GRCh38 released NTR biosample ENCFF599CAI bigBed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF600YPZ 12494692 ENCODE Processing Pipeline 8d285a11436316af6f89031dcf61870a https://www.encodeproject.org/files/ENCFF599CAI/@@download/ENCFF599CAI.bigBed GRCh38 released NTR biosample ENCFF153UXX bigBed narrowPeak optimal idr thresholded peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1, 2 ENCFF215SIC 1155460 ENCODE Processing Pipeline e1f2edc475ef64a7a03ffa0a3a8f7c25 https://www.encodeproject.org/files/ENCFF153UXX/@@download/ENCFF153UXX.bigBed GRCh38 released NTR biosample ENCFF002BEY fastq reads ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1335394346 Richard Myers, HAIB 44ed664e27e5574f7b47ffb992c59b2d SRA:SRR5331540 https://www.encodeproject.org/files/ENCFF002BEY/@@download/ENCFF002BEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released borderline replicate concordance, low read depth ENCFF002BEZ fastq reads ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1643310064 Richard Myers, HAIB 23c946a2956d3d0df467794080c0db89 SRA:SRR5331539 https://www.encodeproject.org/files/ENCFF002BEZ/@@download/ENCFF002BEZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released borderline replicate concordance, low read depth ENCFF892IPP bigWig signal p-value ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ 1117587067 ENCODE Processing Pipeline 469bbc787de0a7cdb4ac1d102414f642 https://www.encodeproject.org/files/ENCFF892IPP/@@download/ENCFF892IPP.bigWig hg19 released borderline replicate concordance, low read depth ENCFF835JQA bigWig signal p-value ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ, ENCFF454ZDW 1429616622 ENCODE Processing Pipeline 6912f95f6ee6cfb20870f9f942b040f1 https://www.encodeproject.org/files/ENCFF835JQA/@@download/ENCFF835JQA.bigWig hg19 released borderline replicate concordance, low read depth ENCFF071BKT bigWig fold change over control ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ 782818948 ENCODE Processing Pipeline 4c932ab0670e1b0c29a3a6031acb829b https://www.encodeproject.org/files/ENCFF071BKT/@@download/ENCFF071BKT.bigWig hg19 released borderline replicate concordance, low read depth ENCFF014XHT bigWig fold change over control ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ, ENCFF454ZDW 1122211304 ENCODE Processing Pipeline ee554d4632a774b72a748547fa97ee0d https://www.encodeproject.org/files/ENCFF014XHT/@@download/ENCFF014XHT.bigWig hg19 released borderline replicate concordance, low read depth ENCFF532CRC bam unfiltered alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BEY, ENCFF643CGH 1452008627 ENCODE Processing Pipeline b8a284ba84a2cdf5178187294a595d58 https://www.encodeproject.org/files/ENCFF532CRC/@@download/ENCFF532CRC.bam GRCh38 released borderline replicate concordance, low read depth ENCFF259XFT bam unfiltered alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BEZ, ENCFF643CGH 1781671958 ENCODE Processing Pipeline 9cd66ccaefdac874bc91eb74273d7155 https://www.encodeproject.org/files/ENCFF259XFT/@@download/ENCFF259XFT.bam GRCh38 released borderline replicate concordance, low read depth ENCFF468LGZ bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BEY, ENCFF643CGH 1076580199 ENCODE Processing Pipeline 319d3e1a3272167f9aa0fd056493b8cd https://www.encodeproject.org/files/ENCFF468LGZ/@@download/ENCFF468LGZ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF092TPD bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BEZ, ENCFF643CGH 1337530886 ENCODE Processing Pipeline 9fc7b165611d6ecc6255a1df502bcbe2 https://www.encodeproject.org/files/ENCFF092TPD/@@download/ENCFF092TPD.bam GRCh38 released borderline replicate concordance, low read depth ENCFF810WFP bigWig signal p-value ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF332SVJ, ENCFF468LGZ, ENCFF709XAA 975560544 ENCODE Processing Pipeline 723751fe51e72df3dca027e5203800df https://www.encodeproject.org/files/ENCFF810WFP/@@download/ENCFF810WFP.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF166VNH bigWig signal p-value ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF092TPD, ENCFF332SVJ, ENCFF709XAA 1116355525 ENCODE Processing Pipeline 7161a5055ce654fe024138522a86286e https://www.encodeproject.org/files/ENCFF166VNH/@@download/ENCFF166VNH.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF923RYI bigWig signal p-value ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF092TPD, ENCFF332SVJ, ENCFF468LGZ, ENCFF709XAA 1289899098 ENCODE Processing Pipeline 8e0a974ac375fbb6ebeb099c54b14b6a https://www.encodeproject.org/files/ENCFF923RYI/@@download/ENCFF923RYI.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF133JHI bigWig fold change over control ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF332SVJ, ENCFF468LGZ, ENCFF709XAA 647436028 ENCODE Processing Pipeline f8457911b1e2a7d0af38b08dde82cf3c https://www.encodeproject.org/files/ENCFF133JHI/@@download/ENCFF133JHI.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF420RGP bigWig fold change over control ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF092TPD, ENCFF332SVJ, ENCFF709XAA 829750645 ENCODE Processing Pipeline f96b98d255e24a845f26bfec494d86a7 https://www.encodeproject.org/files/ENCFF420RGP/@@download/ENCFF420RGP.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF803KNM bigWig fold change over control ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF092TPD, ENCFF332SVJ, ENCFF468LGZ, ENCFF709XAA 1138898535 ENCODE Processing Pipeline 88cd3852b2de492d6d62086d31dd6915 https://www.encodeproject.org/files/ENCFF803KNM/@@download/ENCFF803KNM.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF502KNP bigBed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF703QQK 11532461 ENCODE Processing Pipeline 6a5703f1a0fd3d32880f3ef711b67c82 https://www.encodeproject.org/files/ENCFF502KNP/@@download/ENCFF502KNP.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF203IYU bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF092TPD, ENCFF332SVJ, ENCFF709XAA 5743958 ENCODE Processing Pipeline a1f5c21907d2c7d2a51fd6ba43811b72 https://www.encodeproject.org/files/ENCFF203IYU/@@download/ENCFF203IYU.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF703QQK bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF092TPD, ENCFF332SVJ, ENCFF468LGZ, ENCFF709XAA 6484414 ENCODE Processing Pipeline cdf0f321a7c2edec1015a64dff75ba9a https://www.encodeproject.org/files/ENCFF703QQK/@@download/ENCFF703QQK.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF098RZO bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF332SVJ, ENCFF468LGZ, ENCFF709XAA 5456078 ENCODE Processing Pipeline a20d08cef41cf34690c4b645a5314f10 https://www.encodeproject.org/files/ENCFF098RZO/@@download/ENCFF098RZO.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF403TAE bed narrowPeak optimal idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF098RZO, ENCFF203IYU, ENCFF419RSJ, ENCFF703QQK 126176 ENCODE Processing Pipeline 0a2c23700963d8712529a64a2b3d03a3 https://www.encodeproject.org/files/ENCFF403TAE/@@download/ENCFF403TAE.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF336OBD bigBed narrowPeak conservative idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF525FJA 238966 ENCODE Processing Pipeline f4de470438db294ac201c2d6274750aa https://www.encodeproject.org/files/ENCFF336OBD/@@download/ENCFF336OBD.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF368VKS bigBed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF203IYU 11415556 ENCODE Processing Pipeline 3681eb0f110eb7934220c659be3923df https://www.encodeproject.org/files/ENCFF368VKS/@@download/ENCFF368VKS.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF987JYW bigBed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF098RZO 11389644 ENCODE Processing Pipeline 0e6a78c78a589150c55b8151f540cbc6 https://www.encodeproject.org/files/ENCFF987JYW/@@download/ENCFF987JYW.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF525FJA bed narrowPeak conservative idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF098RZO, ENCFF203IYU, ENCFF419RSJ, ENCFF703QQK 117052 ENCODE Processing Pipeline 8b402e7dd389473e2aceb4d748390b25 https://www.encodeproject.org/files/ENCFF525FJA/@@download/ENCFF525FJA.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF215QHG bigBed narrowPeak optimal idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF403TAE 250408 ENCODE Processing Pipeline 40e68f4ab55965d717cdb0b06ca643e5 https://www.encodeproject.org/files/ENCFF215QHG/@@download/ENCFF215QHG.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF720LMT bam unfiltered alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BEY, ENCFF807MUK 1447815970 ENCODE Processing Pipeline 6814e8707592662994c092169be55ac8 https://www.encodeproject.org/files/ENCFF720LMT/@@download/ENCFF720LMT.bam hg19 released borderline replicate concordance, low read depth ENCFF340QIC bam unfiltered alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BEZ, ENCFF807MUK 1775698457 ENCODE Processing Pipeline d953ff022291348fedaa1ef0577a1cf7 https://www.encodeproject.org/files/ENCFF340QIC/@@download/ENCFF340QIC.bam hg19 released borderline replicate concordance, low read depth ENCFF454ZDW bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BEY, ENCFF807MUK 1076764085 ENCODE Processing Pipeline 46509af6c013136bf9607bbb3c664d7f https://www.encodeproject.org/files/ENCFF454ZDW/@@download/ENCFF454ZDW.bam hg19 released borderline replicate concordance, low read depth ENCFF135QBJ bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BEZ, ENCFF807MUK 1337498004 ENCODE Processing Pipeline bbc64559ead65b0a38cf866cfd983506 https://www.encodeproject.org/files/ENCFF135QBJ/@@download/ENCFF135QBJ.bam hg19 released borderline replicate concordance, low read depth ENCFF361FQK bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF454ZDW 5521548 ENCODE Processing Pipeline 546f0aed9f7d2c4d9afeb14cb1c1159f https://www.encodeproject.org/files/ENCFF361FQK/@@download/ENCFF361FQK.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF578MMW bigWig signal p-value ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF454ZDW 960690828 ENCODE Processing Pipeline 0ba5ede97c4a4aa8dc0e8f622c337e22 https://www.encodeproject.org/files/ENCFF578MMW/@@download/ENCFF578MMW.bigWig hg19 released borderline replicate concordance, low read depth ENCFF978SSL bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ 5968427 ENCODE Processing Pipeline 25f52f43840b144d07c960e5eafe18e9 https://www.encodeproject.org/files/ENCFF978SSL/@@download/ENCFF978SSL.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF005DDK bigWig fold change over control ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF454ZDW 648062461 ENCODE Processing Pipeline 4c79260ae801b00258be655526aebce5 https://www.encodeproject.org/files/ENCFF005DDK/@@download/ENCFF005DDK.bigWig hg19 released borderline replicate concordance, low read depth ENCFF091ZMV bigBed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF361FQK 11387377 ENCODE Processing Pipeline f5ac11417d1fa0f95641d07bd3a4a0cd https://www.encodeproject.org/files/ENCFF091ZMV/@@download/ENCFF091ZMV.bigBed hg19 released borderline replicate concordance, low read depth ENCFF816IYO bigBed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF978SSL 11431029 ENCODE Processing Pipeline 346a9ffb8cc72a94e02c6e3fc164312a https://www.encodeproject.org/files/ENCFF816IYO/@@download/ENCFF816IYO.bigBed hg19 released borderline replicate concordance, low read depth ENCFF056SCJ bigBed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF843XJF 11518522 ENCODE Processing Pipeline d898b405e3e827caf52d2dc7821c850c https://www.encodeproject.org/files/ENCFF056SCJ/@@download/ENCFF056SCJ.bigBed hg19 released borderline replicate concordance, low read depth ENCFF219DOH bed narrowPeak conservative idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF361FQK, ENCFF843XJF, ENCFF978SSL 114020 ENCODE Processing Pipeline 6988bdc10ce774b12b0db425c848158c https://www.encodeproject.org/files/ENCFF219DOH/@@download/ENCFF219DOH.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF961NDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF219DOH 233525 ENCODE Processing Pipeline 56b0639b690a81043a2660176111d419 https://www.encodeproject.org/files/ENCFF961NDZ/@@download/ENCFF961NDZ.bigBed hg19 released borderline replicate concordance, low read depth ENCFF843XJF bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ, ENCFF454ZDW 6501047 ENCODE Processing Pipeline cc4a92f0c29867bfd253d5b2e84101ef https://www.encodeproject.org/files/ENCFF843XJF/@@download/ENCFF843XJF.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF187SDA bigBed narrowPeak optimal idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF062ARS 250355 ENCODE Processing Pipeline 6a58ec500f880b172e26bee4e4f709c7 https://www.encodeproject.org/files/ENCFF187SDA/@@download/ENCFF187SDA.bigBed hg19 released borderline replicate concordance, low read depth ENCFF062ARS bed narrowPeak optimal idr thresholded peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF361FQK, ENCFF843XJF, ENCFF978SSL 127162 ENCODE Processing Pipeline 169dba7b829155124d33176148608d77 https://www.encodeproject.org/files/ENCFF062ARS/@@download/ENCFF062ARS.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF002BFH fastq reads ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1272359428 Richard Myers, HAIB ba6a8d0f63526b139a763ac29ecfcb08 SRA:SRR5339391 https://www.encodeproject.org/files/ENCFF002BFH/@@download/ENCFF002BFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released low read depth, antibody characterized with exemption ENCFF964RPP fastq reads ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1314889666 Richard Myers, HAIB b2eeb24154559932eced2b9dabcc4973 SRA:SRR5339390 https://www.encodeproject.org/files/ENCFF964RPP/@@download/ENCFF964RPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF192IAC/ released low read depth, antibody characterized with exemption ENCFF581VMI bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF643CGH 1377852338 ENCODE Processing Pipeline ab16f893ac6506062760ba22605e79a5 https://www.encodeproject.org/files/ENCFF581VMI/@@download/ENCFF581VMI.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF162MTY bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF643CGH 1054788070 ENCODE Processing Pipeline a40d0f581f1c9bd8b90a08894ca0d60f https://www.encodeproject.org/files/ENCFF162MTY/@@download/ENCFF162MTY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF193PTK bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF964RPP 1387483505 ENCODE Processing Pipeline 2fd698f5b5c82afe482d52335ab8072a https://www.encodeproject.org/files/ENCFF193PTK/@@download/ENCFF193PTK.bam hg19 released low read depth, antibody characterized with exemption ENCFF936WIW bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF964RPP 1388985304 ENCODE Processing Pipeline 334e4066c38761349f178dca58d0dbe2 https://www.encodeproject.org/files/ENCFF936WIW/@@download/ENCFF936WIW.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF045MGB bam unfiltered alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF807MUK 1375527748 ENCODE Processing Pipeline 7b181c3fc9a6590b7a9953264685c7d5 https://www.encodeproject.org/files/ENCFF045MGB/@@download/ENCFF045MGB.bam hg19 released low read depth, antibody characterized with exemption ENCFF500GPO bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF964RPP 1051799974 ENCODE Processing Pipeline 7f6a54b74440f971bd3ded4b5c9bbaa0 https://www.encodeproject.org/files/ENCFF500GPO/@@download/ENCFF500GPO.bam hg19 released low read depth, antibody characterized with exemption ENCFF614KRR bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF964RPP 1056986153 ENCODE Processing Pipeline 76947ec6ef90e32b1ccc6463e389d3f9 https://www.encodeproject.org/files/ENCFF614KRR/@@download/ENCFF614KRR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF517YSM bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF807MUK 1048679444 ENCODE Processing Pipeline f542a92b10f88d5b03d66a033833841a https://www.encodeproject.org/files/ENCFF517YSM/@@download/ENCFF517YSM.bam hg19 released low read depth, antibody characterized with exemption ENCFF881BYX bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 776051773 ENCODE Processing Pipeline 43d322dad4d95b205db7d87b16b6e4c7 https://www.encodeproject.org/files/ENCFF881BYX/@@download/ENCFF881BYX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF966LCJ bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF162MTY, ENCFF423BBH, ENCFF747NOF 809821614 ENCODE Processing Pipeline b9cfe8afc3cddef861f99731ff45594a https://www.encodeproject.org/files/ENCFF966LCJ/@@download/ENCFF966LCJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF648MAE bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF162MTY, ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 878301320 ENCODE Processing Pipeline d7452e962515e498a7f34f1d172e4faa https://www.encodeproject.org/files/ENCFF648MAE/@@download/ENCFF648MAE.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF284OTT bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 525215756 ENCODE Processing Pipeline 050ba6ecc94658cc4ef4cbad60282b96 https://www.encodeproject.org/files/ENCFF284OTT/@@download/ENCFF284OTT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF745JSM bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF162MTY, ENCFF423BBH, ENCFF747NOF 539129417 ENCODE Processing Pipeline db887a63fe0cfa45b2f421e2ef3c0cf6 https://www.encodeproject.org/files/ENCFF745JSM/@@download/ENCFF745JSM.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF639LCK bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF162MTY, ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 838786357 ENCODE Processing Pipeline 6c954581ab2163ed7d8d0dacf104305e https://www.encodeproject.org/files/ENCFF639LCK/@@download/ENCFF639LCK.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF659OTK bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF646WFE 13465302 ENCODE Processing Pipeline 773726a4b8fdd8f8dfe6503c94a5ab4a https://www.encodeproject.org/files/ENCFF659OTK/@@download/ENCFF659OTK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF698YPW bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF961VUW 11322439 ENCODE Processing Pipeline 79b4fd0d2562d0314a1c291bae45ba7d https://www.encodeproject.org/files/ENCFF698YPW/@@download/ENCFF698YPW.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF646WFE bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 6062346 ENCODE Processing Pipeline 0524e595bf8fef96484aa775673a8b21 https://www.encodeproject.org/files/ENCFF646WFE/@@download/ENCFF646WFE.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF795GZP bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF162MTY, ENCFF423BBH, ENCFF614KRR, ENCFF747NOF 6395569 ENCODE Processing Pipeline 2552bf0b9e257d55c0d002d5765e350e https://www.encodeproject.org/files/ENCFF795GZP/@@download/ENCFF795GZP.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF711VDK bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF795GZP 13636096 ENCODE Processing Pipeline 13f4997e1fe7fcd3260b33c566d456db https://www.encodeproject.org/files/ENCFF711VDK/@@download/ENCFF711VDK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF961VUW bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF162MTY, ENCFF423BBH, ENCFF747NOF 5458452 ENCODE Processing Pipeline 7f6d0775533a4e3bc388164b68d2ddd3 https://www.encodeproject.org/files/ENCFF961VUW/@@download/ENCFF961VUW.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF503NOA bigBed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF035AJG 1073227 ENCODE Processing Pipeline 9c8ee0c78780a92303ba71057816bd79 https://www.encodeproject.org/files/ENCFF503NOA/@@download/ENCFF503NOA.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF086FOI bigBed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF091YID 1198509 ENCODE Processing Pipeline ea002a8b6e6e1a6bc373b6f089f7a1a4 https://www.encodeproject.org/files/ENCFF086FOI/@@download/ENCFF086FOI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF035AJG bed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF646WFE, ENCFF795GZP, ENCFF961VUW 521147 ENCODE Processing Pipeline 603440d0b20450c1c33b08646e9b3510 https://www.encodeproject.org/files/ENCFF035AJG/@@download/ENCFF035AJG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF091YID bed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF646WFE, ENCFF795GZP, ENCFF961VUW 605844 ENCODE Processing Pipeline 6a779db924de2fca75c71bc99be06fc1 https://www.encodeproject.org/files/ENCFF091YID/@@download/ENCFF091YID.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF608VRG bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 770224812 ENCODE Processing Pipeline e6b9f472e3e53f793a88b993db621bf6 https://www.encodeproject.org/files/ENCFF608VRG/@@download/ENCFF608VRG.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF948DXE bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 661703033 ENCODE Processing Pipeline 5b48690b0c185e740a1c138dd49faef3 https://www.encodeproject.org/files/ENCFF948DXE/@@download/ENCFF948DXE.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF741RBE bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 531223046 ENCODE Processing Pipeline e53d1a4bc5556ca7cf8f0d1f864d9cd4 https://www.encodeproject.org/files/ENCFF741RBE/@@download/ENCFF741RBE.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF457KTG bigWig signal p-value ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF500GPO, ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 1023909768 ENCODE Processing Pipeline 0d9c7fde416f10e7a65d436975790e9f https://www.encodeproject.org/files/ENCFF457KTG/@@download/ENCFF457KTG.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF292CRL bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 516320299 ENCODE Processing Pipeline 2b698d88cec6618214352762efc046ee https://www.encodeproject.org/files/ENCFF292CRL/@@download/ENCFF292CRL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF510TYC bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 5371872 ENCODE Processing Pipeline 594c0369b32afa4408986dc95524133a https://www.encodeproject.org/files/ENCFF510TYC/@@download/ENCFF510TYC.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF642JEY bed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF263KGZ, ENCFF510TYC, ENCFF874IMP 475482 ENCODE Processing Pipeline 0e18718a3bd65d189c46e0d31de54a86 https://www.encodeproject.org/files/ENCFF642JEY/@@download/ENCFF642JEY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF403JWE bigWig fold change over control ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF500GPO, ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 865373117 ENCODE Processing Pipeline 1c370e3835a95a8c12abd7999bbd2044 https://www.encodeproject.org/files/ENCFF403JWE/@@download/ENCFF403JWE.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF148GYG bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF510TYC 11216979 ENCODE Processing Pipeline 6250b55b402df62f445ed759c09f954d https://www.encodeproject.org/files/ENCFF148GYG/@@download/ENCFF148GYG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF874IMP bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 5824274 ENCODE Processing Pipeline 6027065cb694432f59cc9542acf08c01 https://www.encodeproject.org/files/ENCFF874IMP/@@download/ENCFF874IMP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF263KGZ bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF500GPO, ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 6273661 ENCODE Processing Pipeline 63d3b4d0d42da1b87519840882dc2961 https://www.encodeproject.org/files/ENCFF263KGZ/@@download/ENCFF263KGZ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF534CKB bed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF263KGZ, ENCFF510TYC, ENCFF874IMP 555303 ENCODE Processing Pipeline 9bde60dc90e039a208a7b9b7abedd50c https://www.encodeproject.org/files/ENCFF534CKB/@@download/ENCFF534CKB.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF777PFN bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF874IMP 13208040 ENCODE Processing Pipeline b0604e91c5a3934611bffca3518c21e2 https://www.encodeproject.org/files/ENCFF777PFN/@@download/ENCFF777PFN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF451DLP bigBed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF263KGZ 13501720 ENCODE Processing Pipeline 4b869a19169beca93da1180a7c88f619 https://www.encodeproject.org/files/ENCFF451DLP/@@download/ENCFF451DLP.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF531NIE bigBed narrowPeak conservative idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF642JEY 1012506 ENCODE Processing Pipeline 36726dec034e30b4b78e16c458a4839e https://www.encodeproject.org/files/ENCFF531NIE/@@download/ENCFF531NIE.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF735XEX bigBed narrowPeak optimal idr thresholded peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF534CKB 1133667 ENCODE Processing Pipeline c63a2697bd34d44dabf3a580552ee9e1 https://www.encodeproject.org/files/ENCFF735XEX/@@download/ENCFF735XEX.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF002BFN fastq reads ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1282863699 Richard Myers, HAIB ee6f9786a4ae9cd0a50de53762bb013c SRA:SRR5338794 https://www.encodeproject.org/files/ENCFF002BFN/@@download/ENCFF002BFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BFW/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF932ZZU fastq reads ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1739137009 Richard Myers, HAIB 9023b30e3662646bae0f20de2d06ce79 SRA:SRR5338795 https://www.encodeproject.org/files/ENCFF932ZZU/@@download/ENCFF932ZZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF192IAC/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF971HFA bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF643CGH 1370741326 ENCODE Processing Pipeline 743ca8ed092877650b2a953b4a2d152a https://www.encodeproject.org/files/ENCFF971HFA/@@download/ENCFF971HFA.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF698NSE bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF643CGH 1034909066 ENCODE Processing Pipeline 684e844609f75d596b0ab5991f6e55b5 https://www.encodeproject.org/files/ENCFF698NSE/@@download/ENCFF698NSE.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF943VWM bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF932ZZU 1863381437 ENCODE Processing Pipeline 1ebcc5be503da497ca7cd6ba14f1ddb9 https://www.encodeproject.org/files/ENCFF943VWM/@@download/ENCFF943VWM.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF171JQZ bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF932ZZU 1867199919 ENCODE Processing Pipeline 073ddcff1fef5a12c4545b6aabd5aefa https://www.encodeproject.org/files/ENCFF171JQZ/@@download/ENCFF171JQZ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF856LVF bam unfiltered alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF807MUK 1368597559 ENCODE Processing Pipeline db23a026af45eefd63939d3bfd1a0222 https://www.encodeproject.org/files/ENCFF856LVF/@@download/ENCFF856LVF.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF086LJZ bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF807MUK 1030025425 ENCODE Processing Pipeline ff112d956ea46eecaf08405d17c4b815 https://www.encodeproject.org/files/ENCFF086LJZ/@@download/ENCFF086LJZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF662NBQ bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF932ZZU 1406049840 ENCODE Processing Pipeline 58aae4ae0e9080cbedb9451715d336ef https://www.encodeproject.org/files/ENCFF662NBQ/@@download/ENCFF662NBQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF720HIA bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF932ZZU 1401673146 ENCODE Processing Pipeline 30efcdd96c494a1de71659e164c357b2 https://www.encodeproject.org/files/ENCFF720HIA/@@download/ENCFF720HIA.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF874ZET bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ 835071846 ENCODE Processing Pipeline 15f814c426cd1dd9c064adbc526f861e https://www.encodeproject.org/files/ENCFF874ZET/@@download/ENCFF874ZET.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF344SMC bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF423BBH, ENCFF698NSE 658577731 ENCODE Processing Pipeline fb5618dcda3edfc126ac49b7c64bdcad https://www.encodeproject.org/files/ENCFF344SMC/@@download/ENCFF344SMC.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF811MTO bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ, ENCFF698NSE 1070537373 ENCODE Processing Pipeline f36b612a8f266f28609dced1c442118b https://www.encodeproject.org/files/ENCFF811MTO/@@download/ENCFF811MTO.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF981SHX bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ 656313155 ENCODE Processing Pipeline 3a399f9797784055795f8071f3e63a62 https://www.encodeproject.org/files/ENCFF981SHX/@@download/ENCFF981SHX.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF483RRV bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF423BBH, ENCFF698NSE 547580121 ENCODE Processing Pipeline 9222b57fdaeac4e51eb0c3a6ffeac6bb https://www.encodeproject.org/files/ENCFF483RRV/@@download/ENCFF483RRV.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF861VZC bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ, ENCFF698NSE 953986518 ENCODE Processing Pipeline 168c1e85dd7be5f4b197a8ba8ca2965a https://www.encodeproject.org/files/ENCFF861VZC/@@download/ENCFF861VZC.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF486GLA bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF602ZVQ 10965195 ENCODE Processing Pipeline cc4ef549fc9b088c709c0cfbebf4a968 https://www.encodeproject.org/files/ENCFF486GLA/@@download/ENCFF486GLA.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF726PZE bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016ZSU 11215357 ENCODE Processing Pipeline 0fea52afbe170187f2b5bafc9c9586a4 https://www.encodeproject.org/files/ENCFF726PZE/@@download/ENCFF726PZE.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF697YQI bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF514DIZ 13634308 ENCODE Processing Pipeline 6a0b5af237494d1533142e3c9dd2471d https://www.encodeproject.org/files/ENCFF697YQI/@@download/ENCFF697YQI.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF016ZSU bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ 5719950 ENCODE Processing Pipeline d015cee85816b93b2975583e0722e49b https://www.encodeproject.org/files/ENCFF016ZSU/@@download/ENCFF016ZSU.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF602ZVQ bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF423BBH, ENCFF698NSE 4858450 ENCODE Processing Pipeline 9e373ec32bbeb1f53fba4567f1b2ff32 https://www.encodeproject.org/files/ENCFF602ZVQ/@@download/ENCFF602ZVQ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF514DIZ bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF423BBH, ENCFF662NBQ, ENCFF698NSE 6221164 ENCODE Processing Pipeline caf3d4b3a3e58e3de161f28637c667d6 https://www.encodeproject.org/files/ENCFF514DIZ/@@download/ENCFF514DIZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF555ECR bed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016ZSU, ENCFF419RSJ, ENCFF514DIZ, ENCFF602ZVQ 152503 ENCODE Processing Pipeline 64007b07ddad7c378f11c18336b5ebee https://www.encodeproject.org/files/ENCFF555ECR/@@download/ENCFF555ECR.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF360NHM bigBed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF555ECR 344029 ENCODE Processing Pipeline 2d60555aed6a070e6e04c8f22802262a https://www.encodeproject.org/files/ENCFF360NHM/@@download/ENCFF360NHM.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF152RNE bed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016ZSU, ENCFF419RSJ, ENCFF514DIZ, ENCFF602ZVQ 180973 ENCODE Processing Pipeline 015284dbf41a9e9ef2baac67bc49e860 https://www.encodeproject.org/files/ENCFF152RNE/@@download/ENCFF152RNE.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF711EAY bigBed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF152RNE 386604 ENCODE Processing Pipeline d8498c24524a2e84c1909aed885f2ee6 https://www.encodeproject.org/files/ENCFF711EAY/@@download/ENCFF711EAY.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF238MQA bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 701734324 ENCODE Processing Pipeline b14ecc077c51a682c18ada1dd7cbe1cf https://www.encodeproject.org/files/ENCFF238MQA/@@download/ENCFF238MQA.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF776DVS bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 821683753 ENCODE Processing Pipeline abb00bf954decaef2f0d30867e494096 https://www.encodeproject.org/files/ENCFF776DVS/@@download/ENCFF776DVS.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF575CHF bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 664102822 ENCODE Processing Pipeline 361bd063df7d5d35bf68760a7f15ad2d https://www.encodeproject.org/files/ENCFF575CHF/@@download/ENCFF575CHF.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF675KLX bigWig signal p-value ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086LJZ, ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 823843282 ENCODE Processing Pipeline cd67c10358ccf5445d43b44be110a293 https://www.encodeproject.org/files/ENCFF675KLX/@@download/ENCFF675KLX.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF965HNY bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 563769193 ENCODE Processing Pipeline e74a580878567b179c2195fc2e1c63a7 https://www.encodeproject.org/files/ENCFF965HNY/@@download/ENCFF965HNY.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF758RBF bigWig fold change over control ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086LJZ, ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 970063366 ENCODE Processing Pipeline e582a8bb25c2b7dfa5110d1cf9f6b58c https://www.encodeproject.org/files/ENCFF758RBF/@@download/ENCFF758RBF.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF508MRO bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 5612436 ENCODE Processing Pipeline 9873663b99886607e58e6da699e5d349 https://www.encodeproject.org/files/ENCFF508MRO/@@download/ENCFF508MRO.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF607MBL bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF988AWI 13616928 ENCODE Processing Pipeline fe54c2b6c96dfda5617816fcc0333263 https://www.encodeproject.org/files/ENCFF607MBL/@@download/ENCFF607MBL.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF988AWI bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF086LJZ, ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 6222053 ENCODE Processing Pipeline b4ce00040b0b3955fd0c12c05b64bac0 https://www.encodeproject.org/files/ENCFF988AWI/@@download/ENCFF988AWI.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF925ZGX bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 4985334 ENCODE Processing Pipeline 977767272dab7b9267fce5f771334049 https://www.encodeproject.org/files/ENCFF925ZGX/@@download/ENCFF925ZGX.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF817AOQ bed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF508MRO, ENCFF925ZGX, ENCFF988AWI 151146 ENCODE Processing Pipeline d6f30f82bca591b0adba46bb845d147f https://www.encodeproject.org/files/ENCFF817AOQ/@@download/ENCFF817AOQ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF658YKK bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF925ZGX 11011877 ENCODE Processing Pipeline 86477f4de5e9c7977e928ff75ba839a3 https://www.encodeproject.org/files/ENCFF658YKK/@@download/ENCFF658YKK.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF946CVP bigBed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF508MRO 11180708 ENCODE Processing Pipeline a4ca167eb67046da5c51057f020a6a5a https://www.encodeproject.org/files/ENCFF946CVP/@@download/ENCFF946CVP.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF448TPQ bigBed narrowPeak conservative idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817AOQ 341895 ENCODE Processing Pipeline e9ece4c85cf5f09d27142a617b2a5f16 https://www.encodeproject.org/files/ENCFF448TPQ/@@download/ENCFF448TPQ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF305ICK bed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF508MRO, ENCFF925ZGX, ENCFF988AWI 177224 ENCODE Processing Pipeline a4d821726cb81b6e654150bb39ba9b05 https://www.encodeproject.org/files/ENCFF305ICK/@@download/ENCFF305ICK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF116JVL bigBed narrowPeak optimal idr thresholded peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF305ICK 380278 ENCODE Processing Pipeline 810070e9f8834f396460797acc9ac1b4 https://www.encodeproject.org/files/ENCFF116JVL/@@download/ENCFF116JVL.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF675KKR bam unfiltered alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 100 ENCFF274ZEZ, ENCFF565JGI, ENCFF807MUK 3496159759 ENCODE Processing Pipeline ba53220812b4ccc96155da014993c533 https://www.encodeproject.org/files/ENCFF675KKR/@@download/ENCFF675KKR.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF381SAQ bam unfiltered alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 100 ENCFF026WQA, ENCFF199DAD, ENCFF807MUK 4221085414 ENCODE Processing Pipeline 9d3e3b129276aea8340bc3729ba41d36 https://www.encodeproject.org/files/ENCFF381SAQ/@@download/ENCFF381SAQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF199DAD fastq reads ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF026WQA 1901486531 Michael Snyder, Stanford 211b4c2b45703ed5a457c6d924f7f720 SRA:SRR5111083 https://www.encodeproject.org/files/ENCFF199DAD/@@download/ENCFF199DAD.fastq.gz Illumina HiSeq 2000 /files/ENCFF390XLA/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF026WQA fastq reads ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF199DAD 1996695085 Michael Snyder, Stanford fb93c1c7642e7f6f4bc443077acd881a SRA:SRR5111083 https://www.encodeproject.org/files/ENCFF026WQA/@@download/ENCFF026WQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF783BXZ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF274ZEZ fastq reads ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF565JGI 1612005871 Michael Snyder, Stanford 74905e113c92f3587fc104848e4d4608 SRA:SRR5111082 https://www.encodeproject.org/files/ENCFF274ZEZ/@@download/ENCFF274ZEZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF390XLA/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF565JGI fastq reads ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF274ZEZ 1674121341 Michael Snyder, Stanford 71ce1095cf4eb6285e262595b1224016 SRA:SRR5111082 https://www.encodeproject.org/files/ENCFF565JGI/@@download/ENCFF565JGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF783BXZ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF678WSG bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 100 ENCFF026WQA, ENCFF199DAD, ENCFF807MUK 2960969785 ENCODE Processing Pipeline 2c025867a1b3069f6398d8a21e212646 https://www.encodeproject.org/files/ENCFF678WSG/@@download/ENCFF678WSG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF252BPD bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 100 ENCFF274ZEZ, ENCFF565JGI, ENCFF807MUK 2333810785 ENCODE Processing Pipeline f47a96c00d0f28b6977e05109b796b81 https://www.encodeproject.org/files/ENCFF252BPD/@@download/ENCFF252BPD.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF874SSJ bigWig signal p-value ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF678WSG, ENCFF847WWC 876325005 ENCODE Processing Pipeline 9cccb228846187a98d844187e05799d1 https://www.encodeproject.org/files/ENCFF874SSJ/@@download/ENCFF874SSJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF728KXF bigWig signal p-value ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF252BPD, ENCFF847WWC 656263191 ENCODE Processing Pipeline 19b7052fdb663baec9e21f6782303cb7 https://www.encodeproject.org/files/ENCFF728KXF/@@download/ENCFF728KXF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF736PXD bigWig signal p-value ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF252BPD, ENCFF678WSG, ENCFF847WWC 1122508793 ENCODE Processing Pipeline 7060f2b598a3645d3a91975fade3642d https://www.encodeproject.org/files/ENCFF736PXD/@@download/ENCFF736PXD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF372AXO bigWig fold change over control ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF678WSG, ENCFF847WWC 735024345 ENCODE Processing Pipeline c9d6246e8479e57e4522e819a2cae973 https://www.encodeproject.org/files/ENCFF372AXO/@@download/ENCFF372AXO.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF223HQQ bigWig fold change over control ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF252BPD, ENCFF847WWC 669417465 ENCODE Processing Pipeline 1e097d9eafa5a8c38cd68a434230000b https://www.encodeproject.org/files/ENCFF223HQQ/@@download/ENCFF223HQQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF328JKG bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF678WSG, ENCFF847WWC 5957104 ENCODE Processing Pipeline 6e62a8695452b07cd3c97d0583220ac3 https://www.encodeproject.org/files/ENCFF328JKG/@@download/ENCFF328JKG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF313HJO bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF252BPD, ENCFF847WWC 6066355 ENCODE Processing Pipeline b487f0b2226a0251fa87c44d3d0f3897 https://www.encodeproject.org/files/ENCFF313HJO/@@download/ENCFF313HJO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF879MML bigWig fold change over control ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF252BPD, ENCFF678WSG, ENCFF847WWC 1107109011 ENCODE Processing Pipeline 60b4467f1b03c6a9bf49adeb9c123793 https://www.encodeproject.org/files/ENCFF879MML/@@download/ENCFF879MML.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF572YZB bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF252BPD, ENCFF678WSG, ENCFF847WWC 6832331 ENCODE Processing Pipeline b91e0ce07796c45372e0303da36a545c https://www.encodeproject.org/files/ENCFF572YZB/@@download/ENCFF572YZB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF872TWC bigBed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF313HJO 13252854 ENCODE Processing Pipeline d4327953a26242ab50c341776a503336 https://www.encodeproject.org/files/ENCFF872TWC/@@download/ENCFF872TWC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF623FNX bigBed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF328JKG 13303566 ENCODE Processing Pipeline 459f8c030b9ae9185eb1985e6bd91c2b https://www.encodeproject.org/files/ENCFF623FNX/@@download/ENCFF623FNX.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF257VYN bigBed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF572YZB 13175648 ENCODE Processing Pipeline 12fd3269f757cf43b207b75d11ae3ca4 https://www.encodeproject.org/files/ENCFF257VYN/@@download/ENCFF257VYN.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF324FUU bam unfiltered alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 100 ENCFF026WQA, ENCFF199DAD, ENCFF643CGH 4225714203 ENCODE Processing Pipeline d6998800d21f0998992d08deb62f807b https://www.encodeproject.org/files/ENCFF324FUU/@@download/ENCFF324FUU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF907KXX bam unfiltered alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 100 ENCFF274ZEZ, ENCFF565JGI, ENCFF643CGH 3498899046 ENCODE Processing Pipeline 17e49db20cf8cfe4d7f542d17eaa9ea2 https://www.encodeproject.org/files/ENCFF907KXX/@@download/ENCFF907KXX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF294DBF bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 100 ENCFF274ZEZ, ENCFF565JGI, ENCFF643CGH 2334268629 ENCODE Processing Pipeline 6a5e5759c17fa5c66df22f752bdcb77e https://www.encodeproject.org/files/ENCFF294DBF/@@download/ENCFF294DBF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF334OKF bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 100 ENCFF026WQA, ENCFF199DAD, ENCFF643CGH 2961520443 ENCODE Processing Pipeline 9dccde4aaab5586ad2109c3f23ba28d2 https://www.encodeproject.org/files/ENCFF334OKF/@@download/ENCFF334OKF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF386CVM bigWig signal p-value ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF209VFR, ENCFF334OKF 729537420 ENCODE Processing Pipeline 6655958f23414db084196912ab847b89 https://www.encodeproject.org/files/ENCFF386CVM/@@download/ENCFF386CVM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF291PXD bigWig signal p-value ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF209VFR, ENCFF294DBF 690521654 ENCODE Processing Pipeline e2dfc894ef3cc582dc0a845e39316c93 https://www.encodeproject.org/files/ENCFF291PXD/@@download/ENCFF291PXD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF257DGE bigWig signal p-value ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF209VFR, ENCFF294DBF, ENCFF334OKF 1124316553 ENCODE Processing Pipeline 137ab6aa013c16941eaf063a30aa91dc https://www.encodeproject.org/files/ENCFF257DGE/@@download/ENCFF257DGE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF766RVF bigWig fold change over control ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF209VFR, ENCFF334OKF 741021712 ENCODE Processing Pipeline 9df3e5d8be9fab12e53d7fb3e5f69ff2 https://www.encodeproject.org/files/ENCFF766RVF/@@download/ENCFF766RVF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF731JFV bigWig fold change over control ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF209VFR, ENCFF294DBF 681449205 ENCODE Processing Pipeline bfa0616d17fc43162e7cfb6c422b8d13 https://www.encodeproject.org/files/ENCFF731JFV/@@download/ENCFF731JFV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF543DHU bigWig fold change over control ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF209VFR, ENCFF294DBF, ENCFF334OKF 1110085527 ENCODE Processing Pipeline 69f3ba2cc6f7be8f218b64f764a0b22c https://www.encodeproject.org/files/ENCFF543DHU/@@download/ENCFF543DHU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF476ZIX bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF209VFR, ENCFF294DBF 5883211 ENCODE Processing Pipeline 556c9fe28f60cfafcaf6a2934f3f2214 https://www.encodeproject.org/files/ENCFF476ZIX/@@download/ENCFF476ZIX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF959FRJ bigBed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF476ZIX 13237683 ENCODE Processing Pipeline a899622d4e6d8c42dc2656a316fa95a2 https://www.encodeproject.org/files/ENCFF959FRJ/@@download/ENCFF959FRJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF861ZJS bigBed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF701RAG 13190249 ENCODE Processing Pipeline 0270c1a6898951c4e3c6ac223776b434 https://www.encodeproject.org/files/ENCFF861ZJS/@@download/ENCFF861ZJS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF573MKN bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF209VFR, ENCFF334OKF 5825591 ENCODE Processing Pipeline 62ef11a776d3ce2b61131cec29d8b8c8 https://www.encodeproject.org/files/ENCFF573MKN/@@download/ENCFF573MKN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF701RAG bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF209VFR, ENCFF294DBF, ENCFF334OKF 6726452 ENCODE Processing Pipeline e75f061f4ef3bea7ab864fe840f8b560 https://www.encodeproject.org/files/ENCFF701RAG/@@download/ENCFF701RAG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF365CIQ bigBed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF573MKN 13297654 ENCODE Processing Pipeline c3c8cc6604b0d22ec83b3e05a12c37ed https://www.encodeproject.org/files/ENCFF365CIQ/@@download/ENCFF365CIQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF027GDP bed narrowPeak conservative idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF476ZIX, ENCFF573MKN, ENCFF701RAG 192313 ENCODE Processing Pipeline 688bc3aff832e80b446a12a5a10f6fb2 https://www.encodeproject.org/files/ENCFF027GDP/@@download/ENCFF027GDP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF606EUI bed narrowPeak optimal idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF476ZIX, ENCFF573MKN, ENCFF701RAG 274057 ENCODE Processing Pipeline 6995dcc0acd4f25451c7ad5ca83be19e https://www.encodeproject.org/files/ENCFF606EUI/@@download/ENCFF606EUI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF587YVD bigBed narrowPeak conservative idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF027GDP 440048 ENCODE Processing Pipeline d8af82301a410e948b566d1dcb557e6e https://www.encodeproject.org/files/ENCFF587YVD/@@download/ENCFF587YVD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF329BDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF606EUI 573846 ENCODE Processing Pipeline bd4c6308a686229b8b0e43b73e143d96 https://www.encodeproject.org/files/ENCFF329BDJ/@@download/ENCFF329BDJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF726XKT bigBed narrowPeak optimal idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF665FHC 400697 ENCODE Processing Pipeline a582b01b41429c3cbf247229c87cada2 https://www.encodeproject.org/files/ENCFF726XKT/@@download/ENCFF726XKT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF459GME bed narrowPeak conservative idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF313HJO, ENCFF328JKG, ENCFF572YZB 156638 ENCODE Processing Pipeline ece1d1bd0ea684a057482ba82dad6e56 https://www.encodeproject.org/files/ENCFF459GME/@@download/ENCFF459GME.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF072NSN bigBed narrowPeak conservative idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF459GME 321550 ENCODE Processing Pipeline 5f3817f8a261558ed60ea2b34acbcf5a https://www.encodeproject.org/files/ENCFF072NSN/@@download/ENCFF072NSN.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF665FHC bed narrowPeak optimal idr thresholded peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF313HJO, ENCFF328JKG, ENCFF572YZB 215831 ENCODE Processing Pipeline 13b3ccebe630aa070e48ffa45ad69399 https://www.encodeproject.org/files/ENCFF665FHC/@@download/ENCFF665FHC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF143IFX fastq reads ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 1 100 paired-ended 2 ENCFF356UYQ 3601510880 Michael Snyder, Stanford 8bbd30b9d7233ca34f502e17d20d4759 SRA:SRR6214324 https://www.encodeproject.org/files/ENCFF143IFX/@@download/ENCFF143IFX.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF971OYB fastq reads ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 1 100 paired-ended 2 ENCFF898UXT 3513892406 Michael Snyder, Stanford adb15eb96de1f402662a7bc8b50c0ec3 SRA:SRR6214323 https://www.encodeproject.org/files/ENCFF971OYB/@@download/ENCFF971OYB.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF356UYQ fastq reads ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 1 100 paired-ended 1 ENCFF143IFX 3341722102 Michael Snyder, Stanford 79c8e07fd247a5bc96775b2783e070ac SRA:SRR6214324 https://www.encodeproject.org/files/ENCFF356UYQ/@@download/ENCFF356UYQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF898UXT fastq reads ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 1 100 paired-ended 1 ENCFF971OYB 3158317276 Michael Snyder, Stanford afbd0b15f1fe364a77c691fb5ea143ba SRA:SRR6214323 https://www.encodeproject.org/files/ENCFF898UXT/@@download/ENCFF898UXT.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF446TXX bam unfiltered alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 100 ENCFF643CGH, ENCFF898UXT, ENCFF971OYB 6342421681 ENCODE Processing Pipeline c73de1f93ce899d053c6a125b7dee14d https://www.encodeproject.org/files/ENCFF446TXX/@@download/ENCFF446TXX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF187GKL bam unfiltered alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 100 ENCFF143IFX, ENCFF356UYQ, ENCFF643CGH 6798984691 ENCODE Processing Pipeline 36319b87255c918b227500198a770269 https://www.encodeproject.org/files/ENCFF187GKL/@@download/ENCFF187GKL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF786AAB bam unfiltered alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 100 ENCFF807MUK, ENCFF898UXT, ENCFF971OYB 6336015080 ENCODE Processing Pipeline 80813d11dcb741e81258a3676f60bfce https://www.encodeproject.org/files/ENCFF786AAB/@@download/ENCFF786AAB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF200ZYF bam unfiltered alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 100 ENCFF143IFX, ENCFF356UYQ, ENCFF807MUK 6788225711 ENCODE Processing Pipeline 0e20cf4d74ea89729a332fecd6715f2e https://www.encodeproject.org/files/ENCFF200ZYF/@@download/ENCFF200ZYF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF723BUZ bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 100 ENCFF643CGH, ENCFF898UXT, ENCFF971OYB 4306488549 ENCODE Processing Pipeline cbef63f55eda36d139febdc1659b7506 https://www.encodeproject.org/files/ENCFF723BUZ/@@download/ENCFF723BUZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF226SMC bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 100 ENCFF807MUK, ENCFF898UXT, ENCFF971OYB 4303131168 ENCODE Processing Pipeline f4b736b750aa6417eda456482809a68d https://www.encodeproject.org/files/ENCFF226SMC/@@download/ENCFF226SMC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF739YFP bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 100 ENCFF143IFX, ENCFF356UYQ, ENCFF643CGH 5422320753 ENCODE Processing Pipeline dcc967b32da0fa3d6fbca2e1a09cfc6f https://www.encodeproject.org/files/ENCFF739YFP/@@download/ENCFF739YFP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF106KDN bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 100 ENCFF143IFX, ENCFF356UYQ, ENCFF807MUK 5418120683 ENCODE Processing Pipeline dcad086603206babe97eeffd9c966500 https://www.encodeproject.org/files/ENCFF106KDN/@@download/ENCFF106KDN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF263JGK bigWig signal p-value ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF160VXC, ENCFF226SMC 1258321710 ENCODE Processing Pipeline e702ef118502375a5079527f81515795 https://www.encodeproject.org/files/ENCFF263JGK/@@download/ENCFF263JGK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF570EZT bigWig signal p-value ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF106KDN, ENCFF160VXC, ENCFF834TUP 1889233015 ENCODE Processing Pipeline 42b0a65c5fc149a7a4ec24342465f2b4 https://www.encodeproject.org/files/ENCFF570EZT/@@download/ENCFF570EZT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF075PMZ bigWig signal p-value ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF106KDN, ENCFF160VXC, ENCFF226SMC, ENCFF834TUP 1812938139 ENCODE Processing Pipeline 07d49eadf53c925a8af73da78f84e8d9 https://www.encodeproject.org/files/ENCFF075PMZ/@@download/ENCFF075PMZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF281MXB bigWig fold change over control ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF160VXC, ENCFF226SMC 1385714319 ENCODE Processing Pipeline 8acb933eda9f3e1a95769d85db77da84 https://www.encodeproject.org/files/ENCFF281MXB/@@download/ENCFF281MXB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF067SYA bigWig fold change over control ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF106KDN, ENCFF160VXC, ENCFF834TUP 2030876348 ENCODE Processing Pipeline e43c7e5266d0975438a6297c25e0f604 https://www.encodeproject.org/files/ENCFF067SYA/@@download/ENCFF067SYA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF660YEV bigWig fold change over control ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF106KDN, ENCFF160VXC, ENCFF226SMC, ENCFF834TUP 2493538387 ENCODE Processing Pipeline fc48333f3244200b2c6768b1004d83ae https://www.encodeproject.org/files/ENCFF660YEV/@@download/ENCFF660YEV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF784XMU bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF160VXC, ENCFF226SMC 6488413 ENCODE Processing Pipeline 09e5fc32e677c4cee92b4bf569370a99 https://www.encodeproject.org/files/ENCFF784XMU/@@download/ENCFF784XMU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF603XIY bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF106KDN, ENCFF160VXC, ENCFF834TUP 6995126 ENCODE Processing Pipeline 14fccdac275608c4c8aa56ebb80e9e48 https://www.encodeproject.org/files/ENCFF603XIY/@@download/ENCFF603XIY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF676YFV bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF106KDN, ENCFF160VXC, ENCFF226SMC, ENCFF834TUP 7220240 ENCODE Processing Pipeline 2a610860ec43ebdce30569cac29b1b1a https://www.encodeproject.org/files/ENCFF676YFV/@@download/ENCFF676YFV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF008UVL bigBed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF784XMU 10939976 ENCODE Processing Pipeline 9b46c18e5f3914df637c991250282ddd https://www.encodeproject.org/files/ENCFF008UVL/@@download/ENCFF008UVL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF430AIQ bigBed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF676YFV 10952571 ENCODE Processing Pipeline b0bb42fe3eae7b0636dfd8355a7b94b2 https://www.encodeproject.org/files/ENCFF430AIQ/@@download/ENCFF430AIQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF877SUN bigBed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF603XIY 11003232 ENCODE Processing Pipeline 23abab00ad6481f78f74db357da6208b https://www.encodeproject.org/files/ENCFF877SUN/@@download/ENCFF877SUN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF667ODA bed narrowPeak conservative idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF001TDO, ENCFF603XIY, ENCFF676YFV, ENCFF784XMU 18963 ENCODE Processing Pipeline b9517d8987f956c2273e9b4b336cb1f1 https://www.encodeproject.org/files/ENCFF667ODA/@@download/ENCFF667ODA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF265SHZ bigBed narrowPeak conservative idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF667ODA 96836 ENCODE Processing Pipeline 510da9e190ba05ee70e44f3aaf994f12 https://www.encodeproject.org/files/ENCFF265SHZ/@@download/ENCFF265SHZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF803LEC bed narrowPeak optimal idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF001TDO, ENCFF603XIY, ENCFF676YFV, ENCFF784XMU 39105 ENCODE Processing Pipeline c972881736ef420770b268a96d13b327 https://www.encodeproject.org/files/ENCFF803LEC/@@download/ENCFF803LEC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF854LUC bigBed narrowPeak optimal idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF803LEC 133409 ENCODE Processing Pipeline f8f3907fe68c7e7af98c6659e1dce9ac https://www.encodeproject.org/files/ENCFF854LUC/@@download/ENCFF854LUC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF832KKY bigWig signal p-value ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF723BUZ, ENCFF790TAN 1347660008 ENCODE Processing Pipeline 058da8ab0a2bb28df4fd2a07c250ec3f https://www.encodeproject.org/files/ENCFF832KKY/@@download/ENCFF832KKY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF503ZCH bigWig signal p-value ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF712WXB, ENCFF739YFP, ENCFF790TAN 1834284385 ENCODE Processing Pipeline 4dbe1df05ccc93d9a6e18b475c8ccca9 https://www.encodeproject.org/files/ENCFF503ZCH/@@download/ENCFF503ZCH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF413BEJ bigWig signal p-value ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF712WXB, ENCFF723BUZ, ENCFF739YFP, ENCFF790TAN 1880485215 ENCODE Processing Pipeline e4378cc637ade1337e87f5aa6dcbe110 https://www.encodeproject.org/files/ENCFF413BEJ/@@download/ENCFF413BEJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF384NXB bigWig fold change over control ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF723BUZ, ENCFF790TAN 1382122747 ENCODE Processing Pipeline d589678637214d5248e16062d97949c5 https://www.encodeproject.org/files/ENCFF384NXB/@@download/ENCFF384NXB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF117KNW bigWig fold change over control ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF712WXB, ENCFF739YFP, ENCFF790TAN 2023569839 ENCODE Processing Pipeline 9401afebc73b87daf31ef9c07b575ac6 https://www.encodeproject.org/files/ENCFF117KNW/@@download/ENCFF117KNW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF521HWT bigWig fold change over control ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF712WXB, ENCFF723BUZ, ENCFF739YFP, ENCFF790TAN 2496841695 ENCODE Processing Pipeline 197fe43e49ac77db69bb2f0614eb04a1 https://www.encodeproject.org/files/ENCFF521HWT/@@download/ENCFF521HWT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF964VWO bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF712WXB, ENCFF723BUZ, ENCFF739YFP, ENCFF790TAN 7209786 ENCODE Processing Pipeline eecb745436680969948cef308f49041e https://www.encodeproject.org/files/ENCFF964VWO/@@download/ENCFF964VWO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF676DGQ bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF723BUZ, ENCFF790TAN 6298663 ENCODE Processing Pipeline 5a83a048d4c41c21d5e0b71e55e1248f https://www.encodeproject.org/files/ENCFF676DGQ/@@download/ENCFF676DGQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF613XJM bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF712WXB, ENCFF739YFP, ENCFF790TAN 6930134 ENCODE Processing Pipeline 37883be3cb569f2e75e6b9e1557de5d4 https://www.encodeproject.org/files/ENCFF613XJM/@@download/ENCFF613XJM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF495CMT bigBed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF613XJM 11014475 ENCODE Processing Pipeline 6589eb2ac592005afd686d1252d9cec7 https://www.encodeproject.org/files/ENCFF495CMT/@@download/ENCFF495CMT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF095COA bigBed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF676DGQ 10939742 ENCODE Processing Pipeline e566101968a287d810901160679b552a https://www.encodeproject.org/files/ENCFF095COA/@@download/ENCFF095COA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF086ZSD bed narrowPeak conservative idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF613XJM, ENCFF676DGQ, ENCFF964VWO 19223 ENCODE Processing Pipeline 7a6c934a12686e635d1f922cf233a2ec https://www.encodeproject.org/files/ENCFF086ZSD/@@download/ENCFF086ZSD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF574DVM bigBed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF964VWO 10965539 ENCODE Processing Pipeline da2780bd24d2b858c6089c77cc69d105 https://www.encodeproject.org/files/ENCFF574DVM/@@download/ENCFF574DVM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF023NGQ bigBed narrowPeak conservative idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF086ZSD 99301 ENCODE Processing Pipeline 06b701c695b774d857cf4a559a4fe02a https://www.encodeproject.org/files/ENCFF023NGQ/@@download/ENCFF023NGQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF115PGE bed narrowPeak optimal idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF613XJM, ENCFF676DGQ, ENCFF964VWO 37362 ENCODE Processing Pipeline 8417a885ff667abd50e5bd69ad63d1bd https://www.encodeproject.org/files/ENCFF115PGE/@@download/ENCFF115PGE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF949RXP bigBed narrowPeak optimal idr thresholded peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1, 2 ENCFF115PGE 132162 ENCODE Processing Pipeline 373caa559b4b70e31627d59021e92b26 https://www.encodeproject.org/files/ENCFF949RXP/@@download/ENCFF949RXP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF516HQW bam unfiltered alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF105YSI, ENCFF719JFL, ENCFF807MUK 3151575526 ENCODE Processing Pipeline f3a4bd359e18b364b268253c980c64c8 https://www.encodeproject.org/files/ENCFF516HQW/@@download/ENCFF516HQW.bam hg19 released low read depth, missing genetic modification characterization ENCFF883IPY bam unfiltered alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF034LKJ, ENCFF118PSY, ENCFF807MUK 4415275465 ENCODE Processing Pipeline 2012c43755f796d5ca309d113f4dedbc https://www.encodeproject.org/files/ENCFF883IPY/@@download/ENCFF883IPY.bam hg19 released low read depth, missing genetic modification characterization ENCFF719JFL fastq reads ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF105YSI 1437227316 Michael Snyder, Stanford 040b3a827b0d94d8436a4d099c6f572c SRA:SRR5111757 https://www.encodeproject.org/files/ENCFF719JFL/@@download/ENCFF719JFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF160VFX/, /files/ENCFF439KJM/ released low read depth, missing genetic modification characterization ENCFF118PSY fastq reads ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF034LKJ 2053556829 Michael Snyder, Stanford 31a5a85c072b43a16d094786f8311eb9 SRA:SRR5111756 https://www.encodeproject.org/files/ENCFF118PSY/@@download/ENCFF118PSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF160VFX/, /files/ENCFF439KJM/ released low read depth, missing genetic modification characterization ENCFF034LKJ fastq reads ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF118PSY 2059283075 Michael Snyder, Stanford b45e2bfb9f7106e41da02db17f224fab SRA:SRR5111756 https://www.encodeproject.org/files/ENCFF034LKJ/@@download/ENCFF034LKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF160VFX/, /files/ENCFF439KJM/ released low read depth, missing genetic modification characterization ENCFF105YSI fastq reads ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF719JFL 1437455092 Michael Snyder, Stanford c81a0ab3a66a387cb72ddf884870741d SRA:SRR5111757 https://www.encodeproject.org/files/ENCFF105YSI/@@download/ENCFF105YSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF160VFX/, /files/ENCFF439KJM/ released low read depth, missing genetic modification characterization ENCFF653FYP bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF034LKJ, ENCFF118PSY, ENCFF807MUK 3624455568 ENCODE Processing Pipeline ac0e263a0d2a33ff4c6fa4e492a205dd https://www.encodeproject.org/files/ENCFF653FYP/@@download/ENCFF653FYP.bam hg19 released low read depth, missing genetic modification characterization ENCFF497VZQ bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF105YSI, ENCFF719JFL, ENCFF807MUK 2587343753 ENCODE Processing Pipeline 00ecfa801277a45f0bd49ab3a924a42e https://www.encodeproject.org/files/ENCFF497VZQ/@@download/ENCFF497VZQ.bam hg19 released low read depth, missing genetic modification characterization ENCFF901KGO bigWig signal p-value ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF563IAT, ENCFF653FYP 701323786 ENCODE Processing Pipeline ba98cbf4ef027caf6f9807a1720c2a25 https://www.encodeproject.org/files/ENCFF901KGO/@@download/ENCFF901KGO.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF869KOH bigWig fold change over control ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF563IAT, ENCFF653FYP 762536876 ENCODE Processing Pipeline bf651dec9c8bfa044c08f1e8528e3dea https://www.encodeproject.org/files/ENCFF869KOH/@@download/ENCFF869KOH.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF194FEG bigWig fold change over control ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF497VZQ, ENCFF563IAT 604580230 ENCODE Processing Pipeline f2876b6637fb4a3c06eeb7e2cc719641 https://www.encodeproject.org/files/ENCFF194FEG/@@download/ENCFF194FEG.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF688MMW bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF497VZQ, ENCFF563IAT 5858657 ENCODE Processing Pipeline b9c42852aa5db77e1422ac3c1df2bbec https://www.encodeproject.org/files/ENCFF688MMW/@@download/ENCFF688MMW.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF619AGT bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF497VZQ, ENCFF563IAT, ENCFF653FYP 6927837 ENCODE Processing Pipeline 8bf620519d530be30c82f578f33efa34 https://www.encodeproject.org/files/ENCFF619AGT/@@download/ENCFF619AGT.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF670JFE bigWig fold change over control ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF497VZQ, ENCFF563IAT, ENCFF653FYP 1087020373 ENCODE Processing Pipeline dc74a101fafce5fd209b8ed33bebae7e https://www.encodeproject.org/files/ENCFF670JFE/@@download/ENCFF670JFE.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF359JDW bigBed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF619AGT 13774359 ENCODE Processing Pipeline 0040c7a5174b7e635e03d3ce0612e80a https://www.encodeproject.org/files/ENCFF359JDW/@@download/ENCFF359JDW.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF232DTM bigWig signal p-value ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF497VZQ, ENCFF563IAT, ENCFF653FYP 837930765 ENCODE Processing Pipeline 94cc748aeecefdf9e90f182a6a83cdf4 https://www.encodeproject.org/files/ENCFF232DTM/@@download/ENCFF232DTM.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF140CQS bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF563IAT, ENCFF653FYP 6409945 ENCODE Processing Pipeline 371379ba667695673065ea92fcceb6d7 https://www.encodeproject.org/files/ENCFF140CQS/@@download/ENCFF140CQS.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF759YKT bed narrowPeak conservative idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF140CQS, ENCFF619AGT, ENCFF688MMW 688659 ENCODE Processing Pipeline f3e4c6b726db91d636dee4edc466ca59 https://www.encodeproject.org/files/ENCFF759YKT/@@download/ENCFF759YKT.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF310JHO bigWig signal p-value ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF497VZQ, ENCFF563IAT 683048777 ENCODE Processing Pipeline 13898866afbb3e7472880a01fabb20cc https://www.encodeproject.org/files/ENCFF310JHO/@@download/ENCFF310JHO.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF666GYG bigBed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF140CQS 13763880 ENCODE Processing Pipeline 05126a5e32dfe5b638ae07b97aecf43f https://www.encodeproject.org/files/ENCFF666GYG/@@download/ENCFF666GYG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF586ZMX bigBed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF688MMW 11464330 ENCODE Processing Pipeline fe56ac5dbdb02744cf3c0b2c36122706 https://www.encodeproject.org/files/ENCFF586ZMX/@@download/ENCFF586ZMX.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF654RJP bigBed narrowPeak conservative idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF759YKT 1181168 ENCODE Processing Pipeline 2652607b5b9dbce1e22eb218ba9c74ae https://www.encodeproject.org/files/ENCFF654RJP/@@download/ENCFF654RJP.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF548MHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF911VSD 1315417 ENCODE Processing Pipeline 2d4a4cb6f7092b97e6c6c6af8a50f686 https://www.encodeproject.org/files/ENCFF548MHJ/@@download/ENCFF548MHJ.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF911VSD bed narrowPeak optimal idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF140CQS, ENCFF619AGT, ENCFF688MMW 793523 ENCODE Processing Pipeline d730a03d8ebbaaa61fa7df7a259778da https://www.encodeproject.org/files/ENCFF911VSD/@@download/ENCFF911VSD.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF651SRT bam unfiltered alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF105YSI, ENCFF643CGH, ENCFF719JFL 3156159722 ENCODE Processing Pipeline 6752642eb26c6d81c2eb303c6e3de483 https://www.encodeproject.org/files/ENCFF651SRT/@@download/ENCFF651SRT.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF722CKU bam unfiltered alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF034LKJ, ENCFF118PSY, ENCFF643CGH 4421147979 ENCODE Processing Pipeline 131d3367cb175f9baf50e76efe7ae7a9 https://www.encodeproject.org/files/ENCFF722CKU/@@download/ENCFF722CKU.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF945TUI bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF105YSI, ENCFF643CGH, ENCFF719JFL 2587784021 ENCODE Processing Pipeline 06877fe217c320e22b3f96905f27045c https://www.encodeproject.org/files/ENCFF945TUI/@@download/ENCFF945TUI.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF581SOT bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF034LKJ, ENCFF118PSY, ENCFF643CGH 3624746817 ENCODE Processing Pipeline c709171119cfae5cc18b07a31afa3c44 https://www.encodeproject.org/files/ENCFF581SOT/@@download/ENCFF581SOT.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF041PER bigWig signal p-value ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF581SOT, ENCFF886VAQ 817143786 ENCODE Processing Pipeline 92721471b9d89dbb93999e1ca5273a21 https://www.encodeproject.org/files/ENCFF041PER/@@download/ENCFF041PER.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF013SAY bigWig signal p-value ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF886VAQ, ENCFF945TUI 700915675 ENCODE Processing Pipeline 7a64455059485aa2e8f197066fa943e4 https://www.encodeproject.org/files/ENCFF013SAY/@@download/ENCFF013SAY.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF972RCR bigWig signal p-value ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF581SOT, ENCFF886VAQ, ENCFF945TUI 857473004 ENCODE Processing Pipeline dd30b4685050b31497ef4442c30c9fa5 https://www.encodeproject.org/files/ENCFF972RCR/@@download/ENCFF972RCR.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF732LNZ bigWig fold change over control ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF581SOT, ENCFF886VAQ 758984509 ENCODE Processing Pipeline 89174da65a7f20dd04bd05299d1eb8fb https://www.encodeproject.org/files/ENCFF732LNZ/@@download/ENCFF732LNZ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF917NWF bigWig fold change over control ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF886VAQ, ENCFF945TUI 616032705 ENCODE Processing Pipeline c363ed04707f9f9b5f631c60893ebf72 https://www.encodeproject.org/files/ENCFF917NWF/@@download/ENCFF917NWF.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF704MKQ bigWig fold change over control ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF581SOT, ENCFF886VAQ, ENCFF945TUI 1109699560 ENCODE Processing Pipeline 38ea906ceb5c66fdbdb6761fe1fe60f7 https://www.encodeproject.org/files/ENCFF704MKQ/@@download/ENCFF704MKQ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF795DQU bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF886VAQ, ENCFF945TUI 5618788 ENCODE Processing Pipeline f8a00f68846e786b04d11419a9a91bbf https://www.encodeproject.org/files/ENCFF795DQU/@@download/ENCFF795DQU.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF376WDG bigBed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF795DQU 11360140 ENCODE Processing Pipeline 96147c50a7a34ec1d59f93cee094b802 https://www.encodeproject.org/files/ENCFF376WDG/@@download/ENCFF376WDG.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF692VLU bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF581SOT, ENCFF886VAQ 6299551 ENCODE Processing Pipeline 3bf1dd5b553fc4d9c52039b664557cb8 https://www.encodeproject.org/files/ENCFF692VLU/@@download/ENCFF692VLU.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF290DPG bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF581SOT, ENCFF886VAQ, ENCFF945TUI 6828034 ENCODE Processing Pipeline 13461c10a9df7863d2d0e0148a4c8583 https://www.encodeproject.org/files/ENCFF290DPG/@@download/ENCFF290DPG.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF709VKQ bigBed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF692VLU 13793195 ENCODE Processing Pipeline aad61292aa702d7261d380a7115361c7 https://www.encodeproject.org/files/ENCFF709VKQ/@@download/ENCFF709VKQ.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF847LGT bigBed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF290DPG 13784653 ENCODE Processing Pipeline 4982a8d567f23697eb39c07828c36460 https://www.encodeproject.org/files/ENCFF847LGT/@@download/ENCFF847LGT.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF561QTG bigBed narrowPeak conservative idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF769VDQ 1185848 ENCODE Processing Pipeline dd258019c24e74682b9af2802eef68ee https://www.encodeproject.org/files/ENCFF561QTG/@@download/ENCFF561QTG.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF286HTI bed narrowPeak optimal idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF290DPG, ENCFF419RSJ, ENCFF692VLU, ENCFF795DQU 790918 ENCODE Processing Pipeline cea53b76d4303d99def897be661dcfcf https://www.encodeproject.org/files/ENCFF286HTI/@@download/ENCFF286HTI.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF543CRT bigBed narrowPeak optimal idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF286HTI 1318202 ENCODE Processing Pipeline 46371403e7968071cd06406b6ca40343 https://www.encodeproject.org/files/ENCFF543CRT/@@download/ENCFF543CRT.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF769VDQ bed narrowPeak conservative idr thresholded peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF290DPG, ENCFF419RSJ, ENCFF692VLU, ENCFF795DQU 688712 ENCODE Processing Pipeline a6f9817e90d1623c30dc4edc38850979 https://www.encodeproject.org/files/ENCFF769VDQ/@@download/ENCFF769VDQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF267RJS bam unfiltered alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF271TCS, ENCFF508KFG, ENCFF807MUK 1624587393 ENCODE Processing Pipeline d53077c99b1a8b74d8a7997458ffff97 https://www.encodeproject.org/files/ENCFF267RJS/@@download/ENCFF267RJS.bam hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF501LMC bam unfiltered alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF179MKT, ENCFF282ZHS, ENCFF807MUK 2033180679 ENCODE Processing Pipeline cc1b1cec2da5e4332d74b77cbca23a61 https://www.encodeproject.org/files/ENCFF501LMC/@@download/ENCFF501LMC.bam hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF282ZHS fastq reads ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 700156301 Kevin White, UChicago 2d3b0be9b8e54aadfe8d9ae096fc9f47 SRA:SRR6213248 https://www.encodeproject.org/files/ENCFF282ZHS/@@download/ENCFF282ZHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF348XCG/, /files/ENCFF726JBF/ released borderline replicate concordance, missing genetic modification characterization ENCFF508KFG fastq reads ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 562367446 Kevin White, UChicago 93d93f74f6a3e43df137dde0c5a35afe SRA:SRR6213246 https://www.encodeproject.org/files/ENCFF508KFG/@@download/ENCFF508KFG.fastq.gz Illumina HiSeq 2000 /files/ENCFF348XCG/, /files/ENCFF726JBF/ released borderline replicate concordance, missing genetic modification characterization ENCFF179MKT fastq reads ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1245376689 Kevin White, UChicago f3fea2d28086d64125aa966d4fbe9149 SRA:SRR6213249 https://www.encodeproject.org/files/ENCFF179MKT/@@download/ENCFF179MKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF348XCG/, /files/ENCFF726JBF/ released borderline replicate concordance, missing genetic modification characterization ENCFF271TCS fastq reads ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 946605878 Kevin White, UChicago d84df6f2dbb619d7df318de595baac87 SRA:SRR6213247 https://www.encodeproject.org/files/ENCFF271TCS/@@download/ENCFF271TCS.fastq.gz Illumina HiSeq 2500 /files/ENCFF348XCG/, /files/ENCFF726JBF/ released borderline replicate concordance, missing genetic modification characterization ENCFF310DOA bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF271TCS, ENCFF508KFG, ENCFF807MUK 1293363302 ENCODE Processing Pipeline 789fbe558dda760f55d27b0b36698bd8 https://www.encodeproject.org/files/ENCFF310DOA/@@download/ENCFF310DOA.bam hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF303OOS bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF179MKT, ENCFF282ZHS, ENCFF807MUK 1578533844 ENCODE Processing Pipeline 5cf8edcaec83e858369417128bb83c90 https://www.encodeproject.org/files/ENCFF303OOS/@@download/ENCFF303OOS.bam hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF130NOS bigWig signal p-value ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF075EEP, ENCFF303OOS 790362486 ENCODE Processing Pipeline 0bd107da44f18d175dc25e5b6c056023 https://www.encodeproject.org/files/ENCFF130NOS/@@download/ENCFF130NOS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF718RQL bigWig signal p-value ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF075EEP, ENCFF303OOS, ENCFF310DOA 1015638933 ENCODE Processing Pipeline 37609f5f4276874cea14c14ee78741b4 https://www.encodeproject.org/files/ENCFF718RQL/@@download/ENCFF718RQL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF485VOQ bigWig signal p-value ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF075EEP, ENCFF310DOA 660083118 ENCODE Processing Pipeline 1e1f7db38447c6322b5aeeaab0878ff6 https://www.encodeproject.org/files/ENCFF485VOQ/@@download/ENCFF485VOQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF540UPZ bigWig fold change over control ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF075EEP, ENCFF310DOA 781608491 ENCODE Processing Pipeline 7dbf7ea8118491bfcb4aeb8f73eec5ba https://www.encodeproject.org/files/ENCFF540UPZ/@@download/ENCFF540UPZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF579FZB bigWig fold change over control ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF075EEP, ENCFF303OOS 894489620 ENCODE Processing Pipeline 6dfc185bb494e0f1347979455238c8a4 https://www.encodeproject.org/files/ENCFF579FZB/@@download/ENCFF579FZB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF481CQW bigWig fold change over control ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF075EEP, ENCFF303OOS, ENCFF310DOA 1230595444 ENCODE Processing Pipeline c10d79ace66555363342a213216a07f5 https://www.encodeproject.org/files/ENCFF481CQW/@@download/ENCFF481CQW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF014ZNK bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF075EEP, ENCFF303OOS 7084035 ENCODE Processing Pipeline 77ff4cb4f03880759fbea7159b5e1b9e https://www.encodeproject.org/files/ENCFF014ZNK/@@download/ENCFF014ZNK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF529YHQ bigBed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF593QEG 13272137 ENCODE Processing Pipeline 4a310eaee3859ba23139cba3cf4c0a39 https://www.encodeproject.org/files/ENCFF529YHQ/@@download/ENCFF529YHQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF593QEG bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF075EEP, ENCFF303OOS, ENCFF310DOA 7216986 ENCODE Processing Pipeline 30b794e5afc03ed3440259a87f0dd797 https://www.encodeproject.org/files/ENCFF593QEG/@@download/ENCFF593QEG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF851RZA bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF075EEP, ENCFF310DOA 6682206 ENCODE Processing Pipeline 714549be6e829c4e2ec9fc57bfc6d884 https://www.encodeproject.org/files/ENCFF851RZA/@@download/ENCFF851RZA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF054WHU bigBed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF851RZA 13468261 ENCODE Processing Pipeline 762295da7e460eabe48f610741c333b6 https://www.encodeproject.org/files/ENCFF054WHU/@@download/ENCFF054WHU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF969EHC bigBed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF014ZNK 13174769 ENCODE Processing Pipeline 9a292bd8c3431490f4d10919c5ec8e16 https://www.encodeproject.org/files/ENCFF969EHC/@@download/ENCFF969EHC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF666YZZ bam unfiltered alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF271TCS, ENCFF508KFG, ENCFF643CGH 1629772583 ENCODE Processing Pipeline bc8b901cd4a39610f6290d0b6f995817 https://www.encodeproject.org/files/ENCFF666YZZ/@@download/ENCFF666YZZ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF855HYM bam unfiltered alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF179MKT, ENCFF282ZHS, ENCFF643CGH 2038588687 ENCODE Processing Pipeline f49a03639a9153e2d4607cae79b24ae6 https://www.encodeproject.org/files/ENCFF855HYM/@@download/ENCFF855HYM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF693JVP bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF271TCS, ENCFF508KFG, ENCFF643CGH 1292681710 ENCODE Processing Pipeline 3e7afc416ecf184abc9225e08f265068 https://www.encodeproject.org/files/ENCFF693JVP/@@download/ENCFF693JVP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF620VNP bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF179MKT, ENCFF282ZHS, ENCFF643CGH 1577752157 ENCODE Processing Pipeline d419d5d8c1b5d76af4be1e87a0998402 https://www.encodeproject.org/files/ENCFF620VNP/@@download/ENCFF620VNP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF917OJQ bigWig signal p-value ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF037PYE, ENCFF693JVP 722277906 ENCODE Processing Pipeline 11051c5ee97617a8beaeb395f9daffb2 https://www.encodeproject.org/files/ENCFF917OJQ/@@download/ENCFF917OJQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF040VTF bigWig signal p-value ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF037PYE, ENCFF620VNP 885979844 ENCODE Processing Pipeline a665e64d3d320da590d88ed0ce07cbe1 https://www.encodeproject.org/files/ENCFF040VTF/@@download/ENCFF040VTF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF211FHL bigWig signal p-value ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF037PYE, ENCFF620VNP, ENCFF693JVP 1017950442 ENCODE Processing Pipeline 310c2120dadcb6d91767dff49f99b6c9 https://www.encodeproject.org/files/ENCFF211FHL/@@download/ENCFF211FHL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF995REM bigWig fold change over control ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF037PYE, ENCFF693JVP 787820257 ENCODE Processing Pipeline 3fb7bf51f2f66e12d9b5edb6913db79f https://www.encodeproject.org/files/ENCFF995REM/@@download/ENCFF995REM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF321UQL bigWig fold change over control ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF037PYE, ENCFF620VNP 900793916 ENCODE Processing Pipeline cd2609ae33bc09bb3561f3ea94b66ca6 https://www.encodeproject.org/files/ENCFF321UQL/@@download/ENCFF321UQL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF641ZDT bigWig fold change over control ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF037PYE, ENCFF620VNP, ENCFF693JVP 1238785346 ENCODE Processing Pipeline e913dc68c6d89ae5325ea2fedb8372c5 https://www.encodeproject.org/files/ENCFF641ZDT/@@download/ENCFF641ZDT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF496GPP bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF037PYE, ENCFF620VNP 7001524 ENCODE Processing Pipeline 75460f6418e777a081ba03bd9aeeab01 https://www.encodeproject.org/files/ENCFF496GPP/@@download/ENCFF496GPP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF391ZOJ bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF037PYE, ENCFF693JVP 6555962 ENCODE Processing Pipeline f34ab2222d52cd34f97ff8050a2726f2 https://www.encodeproject.org/files/ENCFF391ZOJ/@@download/ENCFF391ZOJ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF557UGI bigBed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF496GPP 13178815 ENCODE Processing Pipeline bac7ca16145688ae4b516514a645175f https://www.encodeproject.org/files/ENCFF557UGI/@@download/ENCFF557UGI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF305IJQ bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF037PYE, ENCFF620VNP, ENCFF693JVP 7179390 ENCODE Processing Pipeline 84059ef020836f096443c1877b5c85a2 https://www.encodeproject.org/files/ENCFF305IJQ/@@download/ENCFF305IJQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF175EUH bigBed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF391ZOJ 13469249 ENCODE Processing Pipeline 778e7c776fa025d9e09a2604f551845c https://www.encodeproject.org/files/ENCFF175EUH/@@download/ENCFF175EUH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF539NRY bigBed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF305IJQ 13281882 ENCODE Processing Pipeline 1d18d11d67fd6515b64cfc6152fa0fde https://www.encodeproject.org/files/ENCFF539NRY/@@download/ENCFF539NRY.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF086CSF bed narrowPeak optimal idr thresholded peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF305IJQ, ENCFF391ZOJ, ENCFF419RSJ, ENCFF496GPP 674912 ENCODE Processing Pipeline 014da54ab1af05561f5b8bf9aa5822da https://www.encodeproject.org/files/ENCFF086CSF/@@download/ENCFF086CSF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF707BHB bigBed narrowPeak optimal idr thresholded peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF086CSF 1275480 ENCODE Processing Pipeline 5c22ef462c2230663618e63f9a8712fb https://www.encodeproject.org/files/ENCFF707BHB/@@download/ENCFF707BHB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF368TTO bigBed narrowPeak optimal idr thresholded peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF606CCB 1127075 ENCODE Processing Pipeline f3ab9453c74a1407c31ef516d4c608ad https://www.encodeproject.org/files/ENCFF368TTO/@@download/ENCFF368TTO.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF606CCB bed narrowPeak optimal idr thresholded peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF014ZNK, ENCFF593QEG, ENCFF851RZA 580428 ENCODE Processing Pipeline 36b3049693b2c5d3cc2c9991f4dbc99a https://www.encodeproject.org/files/ENCFF606CCB/@@download/ENCFF606CCB.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF208PYP fastq reads ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF947KVR 1052457734 Michael Snyder, Stanford 990c586a96ae0c166e6d5d4cf5c432f5 SRA:SRR5112260 https://www.encodeproject.org/files/ENCFF208PYP/@@download/ENCFF208PYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF855HOA fastq reads ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF079AVI 859611628 Michael Snyder, Stanford 0015987b5649a472c27d2464fd05bc02 SRA:SRR5112261 https://www.encodeproject.org/files/ENCFF855HOA/@@download/ENCFF855HOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF079AVI fastq reads ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF855HOA 864218334 Michael Snyder, Stanford 0730d660c08990a83b84b4aafcbfef01 SRA:SRR5112261 https://www.encodeproject.org/files/ENCFF079AVI/@@download/ENCFF079AVI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF947KVR fastq reads ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF208PYP 1055096031 Michael Snyder, Stanford f6bdfdaa26bc4e2264732e6beb067439 SRA:SRR5112260 https://www.encodeproject.org/files/ENCFF947KVR/@@download/ENCFF947KVR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF940DTA bam unfiltered alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF079AVI, ENCFF807MUK, ENCFF855HOA 1988969652 ENCODE Processing Pipeline a4e071adbcee9a9fb071324952425bbb https://www.encodeproject.org/files/ENCFF940DTA/@@download/ENCFF940DTA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF472OVT bam unfiltered alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208PYP, ENCFF807MUK, ENCFF947KVR 2364999896 ENCODE Processing Pipeline 722ccc0dca089c6fb3fc30fe5d7df3c7 https://www.encodeproject.org/files/ENCFF472OVT/@@download/ENCFF472OVT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF808VPA bam unfiltered alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF079AVI, ENCFF643CGH, ENCFF855HOA 1990886781 ENCODE Processing Pipeline 8131205d3ad9a81ce7ea657f4aa81846 https://www.encodeproject.org/files/ENCFF808VPA/@@download/ENCFF808VPA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF014JSO bam unfiltered alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208PYP, ENCFF643CGH, ENCFF947KVR 2367007967 ENCODE Processing Pipeline 6401e2902a104fe9c739c51cee7cb702 https://www.encodeproject.org/files/ENCFF014JSO/@@download/ENCFF014JSO.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF179UQW bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF079AVI, ENCFF807MUK, ENCFF855HOA 1769583501 ENCODE Processing Pipeline bf877ea80b7cd7dcdfeebe380d8cb6c9 https://www.encodeproject.org/files/ENCFF179UQW/@@download/ENCFF179UQW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF811OMJ bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208PYP, ENCFF807MUK, ENCFF947KVR 2060809926 ENCODE Processing Pipeline 4b7e2f167ec5518ea5e3f8afc7820a34 https://www.encodeproject.org/files/ENCFF811OMJ/@@download/ENCFF811OMJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF888DOH bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208PYP, ENCFF643CGH, ENCFF947KVR 2062638700 ENCODE Processing Pipeline 6128d331931a1a81e358e5b19dae1609 https://www.encodeproject.org/files/ENCFF888DOH/@@download/ENCFF888DOH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF234ALA bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF079AVI, ENCFF643CGH, ENCFF855HOA 1770694717 ENCODE Processing Pipeline 374542a54935763790d6f45f1c69fedd https://www.encodeproject.org/files/ENCFF234ALA/@@download/ENCFF234ALA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF169LJS bigWig signal p-value ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF811OMJ 1016256482 ENCODE Processing Pipeline 175dfc3854156c219632259f8c453112 https://www.encodeproject.org/files/ENCFF169LJS/@@download/ENCFF169LJS.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF094FMW bigWig signal p-value ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF179UQW 1155774544 ENCODE Processing Pipeline 119b50b7dd9e4383f591a611c71c80f3 https://www.encodeproject.org/files/ENCFF094FMW/@@download/ENCFF094FMW.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF024ERU bigWig fold change over control ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF811OMJ 830319621 ENCODE Processing Pipeline 4cb86589992ef068bcba2e99dfc5f213 https://www.encodeproject.org/files/ENCFF024ERU/@@download/ENCFF024ERU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF309UNN bigWig signal p-value ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF179UQW, ENCFF811OMJ 1321247315 ENCODE Processing Pipeline 99583a7ba52f7a7664263bec61b0778a https://www.encodeproject.org/files/ENCFF309UNN/@@download/ENCFF309UNN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF817FVZ bigWig fold change over control ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF179UQW 808227070 ENCODE Processing Pipeline 7c19ab7b0c448aa030a081d6c8d34ee2 https://www.encodeproject.org/files/ENCFF817FVZ/@@download/ENCFF817FVZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF132EAK bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF179UQW 6422787 ENCODE Processing Pipeline b4e3159934e135933a0349df7d2441c8 https://www.encodeproject.org/files/ENCFF132EAK/@@download/ENCFF132EAK.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF463AQZ bigWig fold change over control ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF179UQW, ENCFF811OMJ 1260795016 ENCODE Processing Pipeline a2d240475b2ab69c177f984ed7dbf29b https://www.encodeproject.org/files/ENCFF463AQZ/@@download/ENCFF463AQZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF295JFO bigBed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF121JDA 13488326 ENCODE Processing Pipeline c1691cf8aa89c5efe772ea309ce9edcd https://www.encodeproject.org/files/ENCFF295JFO/@@download/ENCFF295JFO.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF633YFP bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF811OMJ 6522018 ENCODE Processing Pipeline ca4e17a6db1f8cafafc7cdb043262b3b https://www.encodeproject.org/files/ENCFF633YFP/@@download/ENCFF633YFP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF118FQI bigBed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF633YFP 13466085 ENCODE Processing Pipeline 18339e3a815e89ae0d50852795e0e6d2 https://www.encodeproject.org/files/ENCFF118FQI/@@download/ENCFF118FQI.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF121JDA bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF179UQW, ENCFF811OMJ 6938128 ENCODE Processing Pipeline 59709e2a6153d19670d6590f2cbcbf00 https://www.encodeproject.org/files/ENCFF121JDA/@@download/ENCFF121JDA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF394TIN bigBed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF132EAK 13258108 ENCODE Processing Pipeline 8b8fa3e01d8232431c653afd1aa7e03a https://www.encodeproject.org/files/ENCFF394TIN/@@download/ENCFF394TIN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF364FSA bed narrowPeak conservative idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF121JDA, ENCFF132EAK, ENCFF633YFP 925506 ENCODE Processing Pipeline ea6ce7e972ee6b85836e148954791c67 https://www.encodeproject.org/files/ENCFF364FSA/@@download/ENCFF364FSA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF008FZF bigBed narrowPeak conservative idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF364FSA 1721432 ENCODE Processing Pipeline 1fa22bad575bf3cec7c878432282d720 https://www.encodeproject.org/files/ENCFF008FZF/@@download/ENCFF008FZF.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF632ZBP bed narrowPeak optimal idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF121JDA, ENCFF132EAK, ENCFF633YFP 1050538 ENCODE Processing Pipeline d5d84a93f9b9347d258bc4620b75ba3a https://www.encodeproject.org/files/ENCFF632ZBP/@@download/ENCFF632ZBP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF423WJU bigBed narrowPeak optimal idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF632ZBP 1905180 ENCODE Processing Pipeline 977ff4da93c6488826cd5a22a970ae9e https://www.encodeproject.org/files/ENCFF423WJU/@@download/ENCFF423WJU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF143XDQ bigWig signal p-value ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF234ALA 1049046374 ENCODE Processing Pipeline 57f1f36b042bcc1db8b0d5bad7f97349 https://www.encodeproject.org/files/ENCFF143XDQ/@@download/ENCFF143XDQ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF381MUE bigWig signal p-value ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF234ALA, ENCFF888DOH 1217450782 ENCODE Processing Pipeline ffdca8ad5b5a8ae7ebdb7bb94c9b3c4b https://www.encodeproject.org/files/ENCFF381MUE/@@download/ENCFF381MUE.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF926UTA bigWig signal p-value ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF888DOH 1061938291 ENCODE Processing Pipeline b7d4dacfb828848b05e0b1b889789c18 https://www.encodeproject.org/files/ENCFF926UTA/@@download/ENCFF926UTA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF122TTM bigWig fold change over control ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF234ALA 811290150 ENCODE Processing Pipeline 08a141a2eca2a074c0edff70ddef6d39 https://www.encodeproject.org/files/ENCFF122TTM/@@download/ENCFF122TTM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF717HXT bigWig fold change over control ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF888DOH 827924888 ENCODE Processing Pipeline 24e396586b51ce4320f73f45c6a47bc1 https://www.encodeproject.org/files/ENCFF717HXT/@@download/ENCFF717HXT.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF502YBJ bigBed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF910SIN 13557539 ENCODE Processing Pipeline aa97cf68fbe0ed5c93c213d99b511699 https://www.encodeproject.org/files/ENCFF502YBJ/@@download/ENCFF502YBJ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF612YQQ bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF234ALA 6321145 ENCODE Processing Pipeline 42a1aabef24df3f23d6347d44792c3a8 https://www.encodeproject.org/files/ENCFF612YQQ/@@download/ENCFF612YQQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF910SIN bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF888DOH 6527367 ENCODE Processing Pipeline bcd0b194fec70ac214682f9b626c9ba0 https://www.encodeproject.org/files/ENCFF910SIN/@@download/ENCFF910SIN.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF123XHW bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF234ALA, ENCFF888DOH 6991849 ENCODE Processing Pipeline ad9dca82947ac045c5fd599719cf0be4 https://www.encodeproject.org/files/ENCFF123XHW/@@download/ENCFF123XHW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF637HQY bigWig fold change over control ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF234ALA, ENCFF888DOH 1234510678 ENCODE Processing Pipeline 6605f8d55e374980b25ccb201f59f243 https://www.encodeproject.org/files/ENCFF637HQY/@@download/ENCFF637HQY.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF238OFT bed narrowPeak optimal idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF123XHW, ENCFF419RSJ, ENCFF612YQQ, ENCFF910SIN 1105760 ENCODE Processing Pipeline 7d942edfdadfc9d6b246b4b8aa0c5d68 https://www.encodeproject.org/files/ENCFF238OFT/@@download/ENCFF238OFT.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF144FTS bigBed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF123XHW 13614344 ENCODE Processing Pipeline 778ed1ff0b64a8be56fdc9b23ac4aca1 https://www.encodeproject.org/files/ENCFF144FTS/@@download/ENCFF144FTS.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF424CIJ bed narrowPeak conservative idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF123XHW, ENCFF419RSJ, ENCFF612YQQ, ENCFF910SIN 956883 ENCODE Processing Pipeline 1938240d9919ce05ee439682f385c5ec https://www.encodeproject.org/files/ENCFF424CIJ/@@download/ENCFF424CIJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF278BFC bigBed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF612YQQ 13246698 ENCODE Processing Pipeline 66c77b3137784fe9ca82f4acc132a336 https://www.encodeproject.org/files/ENCFF278BFC/@@download/ENCFF278BFC.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF522WGK bigBed narrowPeak optimal idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF238OFT 1986241 ENCODE Processing Pipeline fe98b3fe2aaae489e28ce3fdd76feee6 https://www.encodeproject.org/files/ENCFF522WGK/@@download/ENCFF522WGK.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF397RPZ bigBed narrowPeak conservative idr thresholded peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424CIJ 1769983 ENCODE Processing Pipeline 9555bdeefa69132a64f9287272d44eeb https://www.encodeproject.org/files/ENCFF397RPZ/@@download/ENCFF397RPZ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF117GAX fastq reads ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 1 101 paired-ended 1 ENCFF402BMA 3208770731 Michael Snyder, Stanford a43072140f9cfcdae3e69d874b1e1ff9 SRA:SRR5111157 https://www.encodeproject.org/files/ENCFF117GAX/@@download/ENCFF117GAX.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF814VNS fastq reads ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 1 101 paired-ended 1 ENCFF911EMT 3241719105 Michael Snyder, Stanford d588bbb7702d44258ffbf79dd3e2b0c0 SRA:SRR5111156 https://www.encodeproject.org/files/ENCFF814VNS/@@download/ENCFF814VNS.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF402BMA fastq reads ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 1 101 paired-ended 2 ENCFF117GAX 3292827863 Michael Snyder, Stanford e23619d0d0ee6040eea017618a091a01 SRA:SRR5111157 https://www.encodeproject.org/files/ENCFF402BMA/@@download/ENCFF402BMA.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF911EMT fastq reads ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 1 101 paired-ended 2 ENCFF814VNS 3403612803 Michael Snyder, Stanford b1246cadda2aa1d3217a640b2bd19ff5 SRA:SRR5111156 https://www.encodeproject.org/files/ENCFF911EMT/@@download/ENCFF911EMT.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF033VDE bam unfiltered alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 101 ENCFF643CGH, ENCFF814VNS, ENCFF911EMT 6226305391 ENCODE Processing Pipeline 790e5d00f0911cb53679587e590ff60c https://www.encodeproject.org/files/ENCFF033VDE/@@download/ENCFF033VDE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF277IBO bam unfiltered alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 101 ENCFF807MUK, ENCFF814VNS, ENCFF911EMT 6218367874 ENCODE Processing Pipeline d5deddae8535347d344f78dd2b52fdc6 https://www.encodeproject.org/files/ENCFF277IBO/@@download/ENCFF277IBO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF725LYF bam unfiltered alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 101 ENCFF117GAX, ENCFF402BMA, ENCFF643CGH 6297777593 ENCODE Processing Pipeline 36215650591c8c26b8cb935f6ce53d14 https://www.encodeproject.org/files/ENCFF725LYF/@@download/ENCFF725LYF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF391UOY bam unfiltered alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 101 ENCFF117GAX, ENCFF402BMA, ENCFF807MUK 6288179070 ENCODE Processing Pipeline 07a27e1947ab06295c191f5366f8fad3 https://www.encodeproject.org/files/ENCFF391UOY/@@download/ENCFF391UOY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF688OTD bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 101 ENCFF807MUK, ENCFF814VNS, ENCFF911EMT 4540018253 ENCODE Processing Pipeline 10e37d39231ea052311a54afd5852a13 https://www.encodeproject.org/files/ENCFF688OTD/@@download/ENCFF688OTD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF511AWC bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 101 ENCFF643CGH, ENCFF814VNS, ENCFF911EMT 4542334165 ENCODE Processing Pipeline d35908169de894c59bd8ef9f2c9986da https://www.encodeproject.org/files/ENCFF511AWC/@@download/ENCFF511AWC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF006YQA bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 101 ENCFF117GAX, ENCFF402BMA, ENCFF643CGH 5172103368 ENCODE Processing Pipeline 394a227b30607c1f28491f65f81bcb0d https://www.encodeproject.org/files/ENCFF006YQA/@@download/ENCFF006YQA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF640XRH bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 101 ENCFF117GAX, ENCFF402BMA, ENCFF807MUK 5170791113 ENCODE Processing Pipeline b7b06755917df804ed9c015478a01c65 https://www.encodeproject.org/files/ENCFF640XRH/@@download/ENCFF640XRH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF732XYM bigWig signal p-value ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF182WHU, ENCFF688OTD 1429376224 ENCODE Processing Pipeline 3aa78a83b85fff05e08d0674f0ac205a https://www.encodeproject.org/files/ENCFF732XYM/@@download/ENCFF732XYM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF325JYF bigWig signal p-value ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF182WHU, ENCFF640XRH 1485386240 ENCODE Processing Pipeline 0fe83214499a7b7fed25a46efea66a63 https://www.encodeproject.org/files/ENCFF325JYF/@@download/ENCFF325JYF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF557TBT bigWig fold change over control ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF182WHU, ENCFF640XRH 1789357103 ENCODE Processing Pipeline d6c575227915c79f5a5d1a01c4073bf0 https://www.encodeproject.org/files/ENCFF557TBT/@@download/ENCFF557TBT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF004HRI bigWig signal p-value ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF182WHU, ENCFF640XRH, ENCFF688OTD 1922686360 ENCODE Processing Pipeline d695f374e08d909390f83303ce92a94d https://www.encodeproject.org/files/ENCFF004HRI/@@download/ENCFF004HRI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF670FQY bigBed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF575NXE 13195719 ENCODE Processing Pipeline 52b5db3471539167d8a1c29473699f34 https://www.encodeproject.org/files/ENCFF670FQY/@@download/ENCFF670FQY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF875BIZ bigWig fold change over control ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF182WHU, ENCFF688OTD 1695752921 ENCODE Processing Pipeline f816a177cfa7aff47bc887138bc5ab11 https://www.encodeproject.org/files/ENCFF875BIZ/@@download/ENCFF875BIZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF172UMG bigWig fold change over control ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF182WHU, ENCFF640XRH, ENCFF688OTD 2333828353 ENCODE Processing Pipeline 73876489f9ea8ea51af85e5e53705796 https://www.encodeproject.org/files/ENCFF172UMG/@@download/ENCFF172UMG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF704PXA bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF182WHU, ENCFF688OTD 7064913 ENCODE Processing Pipeline d110fd83e49ea7a5656e6a942ec01d17 https://www.encodeproject.org/files/ENCFF704PXA/@@download/ENCFF704PXA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF421MGV bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF182WHU, ENCFF640XRH 7223668 ENCODE Processing Pipeline 1c5f9d796e64cbc7cb325817acb1f606 https://www.encodeproject.org/files/ENCFF421MGV/@@download/ENCFF421MGV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF575NXE bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF182WHU, ENCFF640XRH, ENCFF688OTD 7293360 ENCODE Processing Pipeline c1117519223387f3d9c105b52ed24999 https://www.encodeproject.org/files/ENCFF575NXE/@@download/ENCFF575NXE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF312UBO bed narrowPeak conservative idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF421MGV, ENCFF575NXE, ENCFF704PXA 449352 ENCODE Processing Pipeline 995b2c000f0860ba91b7d2d29c8a99a0 https://www.encodeproject.org/files/ENCFF312UBO/@@download/ENCFF312UBO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF250FNU bigBed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF421MGV 13066683 ENCODE Processing Pipeline 78b4762dfdc95761a8c857b694809723 https://www.encodeproject.org/files/ENCFF250FNU/@@download/ENCFF250FNU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF026PKV bed narrowPeak optimal idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF421MGV, ENCFF575NXE, ENCFF704PXA 581745 ENCODE Processing Pipeline 8176321e0d9cccba3f0d6a29cdd52f57 https://www.encodeproject.org/files/ENCFF026PKV/@@download/ENCFF026PKV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF617MVB bigBed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF704PXA 13385872 ENCODE Processing Pipeline 8bf2433dd336a32377f46c92e6219ad9 https://www.encodeproject.org/files/ENCFF617MVB/@@download/ENCFF617MVB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF191TLE bigBed narrowPeak conservative idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF312UBO 934159 ENCODE Processing Pipeline 8a5871e474345fd3cba2ee31038f392e https://www.encodeproject.org/files/ENCFF191TLE/@@download/ENCFF191TLE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF313DRM bigBed narrowPeak optimal idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF026PKV 1164626 ENCODE Processing Pipeline 09c9592d947210f070e1db0d1f2f4689 https://www.encodeproject.org/files/ENCFF313DRM/@@download/ENCFF313DRM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF452QYP bigWig signal p-value ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF006YQA, ENCFF810LLR 1574836145 ENCODE Processing Pipeline 9c6e19173c155406c6dab00fe0b68d10 https://www.encodeproject.org/files/ENCFF452QYP/@@download/ENCFF452QYP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF412VWX bigWig signal p-value ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF511AWC, ENCFF810LLR 1579108434 ENCODE Processing Pipeline 8286cf51ddc6ee2131f4caf5815a944a https://www.encodeproject.org/files/ENCFF412VWX/@@download/ENCFF412VWX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF007OKV bigWig signal p-value ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF006YQA, ENCFF511AWC, ENCFF810LLR 1924574353 ENCODE Processing Pipeline 9517eea937b7de9db528e4dcac080a84 https://www.encodeproject.org/files/ENCFF007OKV/@@download/ENCFF007OKV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF945AKX bigWig fold change over control ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF006YQA, ENCFF810LLR 1781858737 ENCODE Processing Pipeline 72d1dd78f693e3f8b897b4134ca9bb75 https://www.encodeproject.org/files/ENCFF945AKX/@@download/ENCFF945AKX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF740OHU bigWig fold change over control ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF511AWC, ENCFF810LLR 1683867766 ENCODE Processing Pipeline 51fb55dd43812f94efcf70515a1cd4be https://www.encodeproject.org/files/ENCFF740OHU/@@download/ENCFF740OHU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF527AQC bigWig fold change over control ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF006YQA, ENCFF511AWC, ENCFF810LLR 2336832761 ENCODE Processing Pipeline 9998e64edd5c5b0c839bd19195d98473 https://www.encodeproject.org/files/ENCFF527AQC/@@download/ENCFF527AQC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF109KLD bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF511AWC, ENCFF810LLR 7010811 ENCODE Processing Pipeline c1906101630dddc612de771500be24ed https://www.encodeproject.org/files/ENCFF109KLD/@@download/ENCFF109KLD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF091HZZ bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF006YQA, ENCFF810LLR 7209278 ENCODE Processing Pipeline ab34a56ade936542cd988a583827d9d8 https://www.encodeproject.org/files/ENCFF091HZZ/@@download/ENCFF091HZZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF288AWJ bigBed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF091HZZ 13078158 ENCODE Processing Pipeline c218b1b0ee06c40decdfaef34736db00 https://www.encodeproject.org/files/ENCFF288AWJ/@@download/ENCFF288AWJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF562LWG bigBed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF109KLD 13397377 ENCODE Processing Pipeline 9598f275b707d9736c33d66dc5b332eb https://www.encodeproject.org/files/ENCFF562LWG/@@download/ENCFF562LWG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF093AZD bigBed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF091XXI 13207279 ENCODE Processing Pipeline 1eef500451e1907950f87c2f8e553d8e https://www.encodeproject.org/files/ENCFF093AZD/@@download/ENCFF093AZD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF400SIH bigBed narrowPeak conservative idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF287JBL 940275 ENCODE Processing Pipeline 73f339dc46b006b466333bb9b89466d8 https://www.encodeproject.org/files/ENCFF400SIH/@@download/ENCFF400SIH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF091XXI bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF006YQA, ENCFF511AWC, ENCFF810LLR 7295516 ENCODE Processing Pipeline 1fcb5a4729af0f0ea5803e2de26a3ade https://www.encodeproject.org/files/ENCFF091XXI/@@download/ENCFF091XXI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF886YDF bed narrowPeak optimal idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF091HZZ, ENCFF091XXI, ENCFF109KLD, ENCFF419RSJ 588855 ENCODE Processing Pipeline 6130fc8b4ef717ddbdd04020ad9258e4 https://www.encodeproject.org/files/ENCFF886YDF/@@download/ENCFF886YDF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF287JBL bed narrowPeak conservative idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF091HZZ, ENCFF091XXI, ENCFF109KLD, ENCFF419RSJ 451712 ENCODE Processing Pipeline 3fe8b7041557522e351669ea4b1ac533 https://www.encodeproject.org/files/ENCFF287JBL/@@download/ENCFF287JBL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF587BDK bigBed narrowPeak optimal idr thresholded peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF886YDF 1176755 ENCODE Processing Pipeline 7601a73bd0617428ade726eb7dd4b6ba https://www.encodeproject.org/files/ENCFF587BDK/@@download/ENCFF587BDK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF053MAR bam unfiltered alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF392ROX, ENCFF555DZS, ENCFF807MUK 4966937115 ENCODE Processing Pipeline edf000e9b08dea6118969a9906d02a95 https://www.encodeproject.org/files/ENCFF053MAR/@@download/ENCFF053MAR.bam hg19 released borderline replicate concordance duplicate lane review ENCFF060OQV bam unfiltered alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF110TON, ENCFF702MIH, ENCFF807MUK 4096851937 ENCODE Processing Pipeline c71f661031fb266735a8f2ff02eed2cb https://www.encodeproject.org/files/ENCFF060OQV/@@download/ENCFF060OQV.bam hg19 released borderline replicate concordance duplicate lane review ENCFF110TON fastq reads ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF702MIH 1826427516 Michael Snyder, Stanford 53cf1be77fe09ed99070bce0e7a93fee SRA:SRR5111513 https://www.encodeproject.org/files/ENCFF110TON/@@download/ENCFF110TON.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance duplicate lane review ENCFF702MIH fastq reads ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF110TON 1852637746 Michael Snyder, Stanford 2202f44ff625af77190b18f4fc6288cc SRA:SRR5111513 https://www.encodeproject.org/files/ENCFF702MIH/@@download/ENCFF702MIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance duplicate lane review ENCFF555DZS fastq reads ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 1 100 paired-ended 1 ENCFF392ROX 2235966482 Michael Snyder, Stanford f214ef8ac56166754b97e8c665e9e2f9 SRA:SRR5111512 https://www.encodeproject.org/files/ENCFF555DZS/@@download/ENCFF555DZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance duplicate lane review ENCFF392ROX fastq reads ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 1 100 paired-ended 2 ENCFF555DZS 2344972030 Michael Snyder, Stanford 895499def41766a74a15c8746ab1c542 SRA:SRR5111512 https://www.encodeproject.org/files/ENCFF392ROX/@@download/ENCFF392ROX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance duplicate lane review ENCFF157ZBY bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF110TON, ENCFF702MIH, ENCFF807MUK 3534063756 ENCODE Processing Pipeline c59e30386f437d622ac74c4b2781bce8 https://www.encodeproject.org/files/ENCFF157ZBY/@@download/ENCFF157ZBY.bam hg19 released borderline replicate concordance duplicate lane review ENCFF054VLG bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF392ROX, ENCFF555DZS, ENCFF807MUK 4018055990 ENCODE Processing Pipeline d9e1d4c18dbf6b2d9c83b59c64472e5c https://www.encodeproject.org/files/ENCFF054VLG/@@download/ENCFF054VLG.bam hg19 released borderline replicate concordance duplicate lane review ENCFF869LCQ bigWig signal p-value ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF157ZBY, ENCFF583FAG 853897310 ENCODE Processing Pipeline a7666c9b1001d4f65b73c670b2a566bd https://www.encodeproject.org/files/ENCFF869LCQ/@@download/ENCFF869LCQ.bigWig hg19 released borderline replicate concordance duplicate lane review ENCFF197ZIV bigWig signal p-value ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF054VLG 966871769 ENCODE Processing Pipeline 841dbce066c81387ee13588554899ba7 https://www.encodeproject.org/files/ENCFF197ZIV/@@download/ENCFF197ZIV.bigWig hg19 released borderline replicate concordance duplicate lane review ENCFF497JDN bigWig fold change over control ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF157ZBY, ENCFF583FAG 996335312 ENCODE Processing Pipeline 9529b4a782548406f574aaa527a6d066 https://www.encodeproject.org/files/ENCFF497JDN/@@download/ENCFF497JDN.bigWig hg19 released borderline replicate concordance duplicate lane review ENCFF252FLV bigWig fold change over control ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF054VLG 1110070976 ENCODE Processing Pipeline ae0d6444c6e89c2d09ffaef7527dd91a https://www.encodeproject.org/files/ENCFF252FLV/@@download/ENCFF252FLV.bigWig hg19 released borderline replicate concordance duplicate lane review ENCFF548ATI bam unfiltered alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF392ROX, ENCFF555DZS, ENCFF643CGH 4974423413 ENCODE Processing Pipeline f91b1809df0d3e57482d3c3e8f362d0b https://www.encodeproject.org/files/ENCFF548ATI/@@download/ENCFF548ATI.bam GRCh38 released borderline replicate concordance duplicate lane review ENCFF682YWR bam unfiltered alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF110TON, ENCFF643CGH, ENCFF702MIH 4105495933 ENCODE Processing Pipeline a8faceee0cab4c9f40077ce38ccc35e5 https://www.encodeproject.org/files/ENCFF682YWR/@@download/ENCFF682YWR.bam GRCh38 released borderline replicate concordance duplicate lane review ENCFF670XGC bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF110TON, ENCFF643CGH, ENCFF702MIH 3536875158 ENCODE Processing Pipeline e7df9b23c9c225d5d372b433c9eca01e https://www.encodeproject.org/files/ENCFF670XGC/@@download/ENCFF670XGC.bam GRCh38 released borderline replicate concordance duplicate lane review ENCFF481DGS bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF392ROX, ENCFF555DZS, ENCFF643CGH 4020770417 ENCODE Processing Pipeline b5b3611376b4be73a8d96d198c73ed63 https://www.encodeproject.org/files/ENCFF481DGS/@@download/ENCFF481DGS.bam GRCh38 released borderline replicate concordance duplicate lane review ENCFF153MEF bigWig signal p-value ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF426RDP, ENCFF670XGC 968750624 ENCODE Processing Pipeline d4cbe0fafcf6d229e7d007d8237061ba https://www.encodeproject.org/files/ENCFF153MEF/@@download/ENCFF153MEF.bigWig GRCh38 released borderline replicate concordance duplicate lane review ENCFF193NJH bigWig signal p-value ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF481DGS 1093339690 ENCODE Processing Pipeline 4a9a8c8523a72df5039594b032e8ca5a https://www.encodeproject.org/files/ENCFF193NJH/@@download/ENCFF193NJH.bigWig GRCh38 released borderline replicate concordance duplicate lane review ENCFF798KPA bigWig signal p-value ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF291AFY, ENCFF426RDP, ENCFF481DGS, ENCFF670XGC 1779804086 ENCODE Processing Pipeline 32c7fc8d0b7236359b553186fe1bfb7a https://www.encodeproject.org/files/ENCFF798KPA/@@download/ENCFF798KPA.bigWig GRCh38 released borderline replicate concordance duplicate lane review ENCFF480JRX bigWig fold change over control ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF426RDP, ENCFF670XGC 1019593181 ENCODE Processing Pipeline 0913f96fcc4918b4afb9bf131d4a5127 https://www.encodeproject.org/files/ENCFF480JRX/@@download/ENCFF480JRX.bigWig GRCh38 released borderline replicate concordance duplicate lane review ENCFF864NXE bigWig fold change over control ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF481DGS 1111743358 ENCODE Processing Pipeline 4080e4fc93f9412f98c3f0da197f8a87 https://www.encodeproject.org/files/ENCFF864NXE/@@download/ENCFF864NXE.bigWig GRCh38 released borderline replicate concordance duplicate lane review ENCFF398XNT bigWig fold change over control ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF291AFY, ENCFF426RDP, ENCFF481DGS, ENCFF670XGC 1984808581 ENCODE Processing Pipeline 59568fee09648cbbd9f673ea1b05221e https://www.encodeproject.org/files/ENCFF398XNT/@@download/ENCFF398XNT.bigWig GRCh38 released borderline replicate concordance duplicate lane review ENCFF712LHO bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF426RDP, ENCFF670XGC 5501470 ENCODE Processing Pipeline 51748f209c42f22f6ff8796578950bcc https://www.encodeproject.org/files/ENCFF712LHO/@@download/ENCFF712LHO.bed.gz GRCh38 released borderline replicate concordance duplicate lane review ENCFF812MIH bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF481DGS 6288177 ENCODE Processing Pipeline c31ffd4bff5b8d3dccbdb53b1ec55083 https://www.encodeproject.org/files/ENCFF812MIH/@@download/ENCFF812MIH.bed.gz GRCh38 released borderline replicate concordance duplicate lane review ENCFF676SWL bigBed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF712LHO 11280030 ENCODE Processing Pipeline dfa0098c3f959c9af2212bd4af6ab495 https://www.encodeproject.org/files/ENCFF676SWL/@@download/ENCFF676SWL.bigBed GRCh38 released borderline replicate concordance duplicate lane review ENCFF178MLT bigBed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF812MIH 13318669 ENCODE Processing Pipeline 7adc3443f48c545234843be3f6a32bcd https://www.encodeproject.org/files/ENCFF178MLT/@@download/ENCFF178MLT.bigBed GRCh38 released borderline replicate concordance duplicate lane review ENCFF762ZSW bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF291AFY, ENCFF426RDP, ENCFF481DGS, ENCFF670XGC 7007365 ENCODE Processing Pipeline 2877adad0afa860db3337d20108988fa https://www.encodeproject.org/files/ENCFF762ZSW/@@download/ENCFF762ZSW.bed.gz GRCh38 released borderline replicate concordance duplicate lane review ENCFF688TRG bigBed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF762ZSW 11191187 ENCODE Processing Pipeline a185efcd6c183d56c387c53cce5c02f8 https://www.encodeproject.org/files/ENCFF688TRG/@@download/ENCFF688TRG.bigBed GRCh38 released borderline replicate concordance duplicate lane review ENCFF408TWV bed narrowPeak optimal idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF419RSJ, ENCFF712LHO, ENCFF762ZSW, ENCFF812MIH 151338 ENCODE Processing Pipeline 34baa2b0393b51e77b4b1bc2ddd2a70d https://www.encodeproject.org/files/ENCFF408TWV/@@download/ENCFF408TWV.bed.gz GRCh38 released borderline replicate concordance duplicate lane review ENCFF630YUH bigBed narrowPeak conservative idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF810GDI 242443 ENCODE Processing Pipeline 16d07f99a5daae5bfeb7799c0c88b945 https://www.encodeproject.org/files/ENCFF630YUH/@@download/ENCFF630YUH.bigBed GRCh38 released borderline replicate concordance duplicate lane review ENCFF370OFH bigBed narrowPeak optimal idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF408TWV 334080 ENCODE Processing Pipeline 974e4b06ddba8428cf6399d8c26c4a5c https://www.encodeproject.org/files/ENCFF370OFH/@@download/ENCFF370OFH.bigBed GRCh38 released borderline replicate concordance duplicate lane review ENCFF810GDI bed narrowPeak conservative idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF419RSJ, ENCFF712LHO, ENCFF762ZSW, ENCFF812MIH 92640 ENCODE Processing Pipeline 5d34b8875d831df893c02fafe3102239 https://www.encodeproject.org/files/ENCFF810GDI/@@download/ENCFF810GDI.bed.gz GRCh38 released borderline replicate concordance duplicate lane review ENCFF737SCD bigWig signal p-value ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF054VLG, ENCFF157ZBY, ENCFF583FAG 1889631197 ENCODE Processing Pipeline e1c391a19f32cb8a77b0f59505ffddc0 https://www.encodeproject.org/files/ENCFF737SCD/@@download/ENCFF737SCD.bigWig hg19 released borderline replicate concordance duplicate lane review ENCFF927LSX bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF157ZBY, ENCFF583FAG 5499758 ENCODE Processing Pipeline 05bea0f974f9c2d39c18beffcf55f243 https://www.encodeproject.org/files/ENCFF927LSX/@@download/ENCFF927LSX.bed.gz hg19 released borderline replicate concordance duplicate lane review ENCFF093EZM bigBed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF927LSX 11258981 ENCODE Processing Pipeline a06519df7d8fa1c5da13060385cd7ddb https://www.encodeproject.org/files/ENCFF093EZM/@@download/ENCFF093EZM.bigBed hg19 released borderline replicate concordance duplicate lane review ENCFF227HPI bigBed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF856LKK 13285820 ENCODE Processing Pipeline ee6a6a0932ed80cb800253f8a64dd81a https://www.encodeproject.org/files/ENCFF227HPI/@@download/ENCFF227HPI.bigBed hg19 released borderline replicate concordance duplicate lane review ENCFF267FXT bed narrowPeak optimal idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF001TDO, ENCFF789XUC, ENCFF856LKK, ENCFF927LSX 149657 ENCODE Processing Pipeline 79a57420a683f66d501e513cb37dfda0 https://www.encodeproject.org/files/ENCFF267FXT/@@download/ENCFF267FXT.bed.gz hg19 released borderline replicate concordance duplicate lane review ENCFF635LQF bigWig fold change over control ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF054VLG, ENCFF157ZBY, ENCFF583FAG 1970445782 ENCODE Processing Pipeline b54db0a685bb1cde0b953c6f8b062bb2 https://www.encodeproject.org/files/ENCFF635LQF/@@download/ENCFF635LQF.bigWig hg19 released borderline replicate concordance duplicate lane review ENCFF760UQS bigBed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF789XUC 11171441 ENCODE Processing Pipeline 076847311787fe4bd47273939c69a6ed https://www.encodeproject.org/files/ENCFF760UQS/@@download/ENCFF760UQS.bigBed hg19 released borderline replicate concordance duplicate lane review ENCFF856LKK bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF054VLG 6270732 ENCODE Processing Pipeline 8e49b9da5f224d33949bc01cc5390456 https://www.encodeproject.org/files/ENCFF856LKK/@@download/ENCFF856LKK.bed.gz hg19 released borderline replicate concordance duplicate lane review ENCFF525SMS bed narrowPeak conservative idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF001TDO, ENCFF789XUC, ENCFF856LKK, ENCFF927LSX 93187 ENCODE Processing Pipeline b1e59cd0c2f7ff4e37058cdbfed3f254 https://www.encodeproject.org/files/ENCFF525SMS/@@download/ENCFF525SMS.bed.gz hg19 released borderline replicate concordance duplicate lane review ENCFF789XUC bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF054VLG, ENCFF157ZBY, ENCFF583FAG 7001392 ENCODE Processing Pipeline 4953a07c1f81f39a05003d09d6489b5a https://www.encodeproject.org/files/ENCFF789XUC/@@download/ENCFF789XUC.bed.gz hg19 released borderline replicate concordance duplicate lane review ENCFF195RST bigBed narrowPeak conservative idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF525SMS 241648 ENCODE Processing Pipeline 66743f16e859dd12724c4840f386d9a1 https://www.encodeproject.org/files/ENCFF195RST/@@download/ENCFF195RST.bigBed hg19 released borderline replicate concordance duplicate lane review ENCFF530BLA bigBed narrowPeak optimal idr thresholded peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF267FXT 329339 ENCODE Processing Pipeline 9b1749b650e77fdc8456cb56175b08e5 https://www.encodeproject.org/files/ENCFF530BLA/@@download/ENCFF530BLA.bigBed hg19 released borderline replicate concordance duplicate lane review ENCFF444NCW bam alignments ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF518YRZ, ENCFF643CGH, ENCFF858MFW 3211482238 ENCODE Processing Pipeline 9434f70f66173446886126ade6f1a510 https://www.encodeproject.org/files/ENCFF444NCW/@@download/ENCFF444NCW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF558XVQ bam unfiltered alignments ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF518YRZ, ENCFF643CGH, ENCFF858MFW 4848132938 ENCODE Processing Pipeline 8c8e050ed85ec91cb9f7dac7d2443e87 https://www.encodeproject.org/files/ENCFF558XVQ/@@download/ENCFF558XVQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF653KEU bam alignments ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF518YRZ, ENCFF807MUK, ENCFF858MFW 3208494892 ENCODE Processing Pipeline cbeebaa3fcd7e3d0b96536fd24b78a41 https://www.encodeproject.org/files/ENCFF653KEU/@@download/ENCFF653KEU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF625PTY bam unfiltered alignments ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF518YRZ, ENCFF807MUK, ENCFF858MFW 4850387032 ENCODE Processing Pipeline 36bc486f92c4ca656f716ed768bd409a https://www.encodeproject.org/files/ENCFF625PTY/@@download/ENCFF625PTY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF518YRZ fastq reads ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF858MFW 2991800940 Michael Snyder, Stanford fa193f2376d720f1d39c173480b666b5 SRA:SRR6212930 https://www.encodeproject.org/files/ENCFF518YRZ/@@download/ENCFF518YRZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF036WQP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF858MFW fastq reads ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF518YRZ 2624381725 Michael Snyder, Stanford e8b84ff883725cd4fcf6d5c67e6f7fb2 SRA:SRR6212930 https://www.encodeproject.org/files/ENCFF858MFW/@@download/ENCFF858MFW.fastq.gz Illumina HiSeq 4000 /files/ENCFF819UOF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF007QRU bigWig signal p-value ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF492MLX, ENCFF653KEU 1185659318 ENCODE Processing Pipeline 58ce2161ae0007aa33b70f11fd235dae https://www.encodeproject.org/files/ENCFF007QRU/@@download/ENCFF007QRU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF086XDO bigWig fold change over control ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF492MLX, ENCFF653KEU 1314797546 ENCODE Processing Pipeline 75cf2a6b7e28c0bbb6d15eb43baeaf95 https://www.encodeproject.org/files/ENCFF086XDO/@@download/ENCFF086XDO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF856ZCX bed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF492MLX, ENCFF653KEU 6434619 ENCODE Processing Pipeline 2991024c9bb5f14ee8b65fdc0d7278af https://www.encodeproject.org/files/ENCFF856ZCX/@@download/ENCFF856ZCX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF074HGF bigBed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF856ZCX 11614093 ENCODE Processing Pipeline 2c05987a776e1faf80fd98eaab84f38e https://www.encodeproject.org/files/ENCFF074HGF/@@download/ENCFF074HGF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF045AYR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF001TDO, ENCFF856ZCX 623703 ENCODE Processing Pipeline e362a3c04e816689618621968673bdf7 https://www.encodeproject.org/files/ENCFF045AYR/@@download/ENCFF045AYR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF980VGS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF045AYR 1115828 ENCODE Processing Pipeline a2c9d28da33dc29d4d0c15e854e91ea8 https://www.encodeproject.org/files/ENCFF980VGS/@@download/ENCFF980VGS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF792LHU bigWig signal p-value ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF206AIY, ENCFF444NCW 1183071759 ENCODE Processing Pipeline ac8e46c5424e6a8da5a87b430e131911 https://www.encodeproject.org/files/ENCFF792LHU/@@download/ENCFF792LHU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF440WKB bigWig fold change over control ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF206AIY, ENCFF444NCW 1296130123 ENCODE Processing Pipeline 876ca4e2d43a1d387ac7f7034b791ce6 https://www.encodeproject.org/files/ENCFF440WKB/@@download/ENCFF440WKB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF943XYS bed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF206AIY, ENCFF444NCW 6451777 ENCODE Processing Pipeline 44442046d3bf0d58d97b65bf63b10884 https://www.encodeproject.org/files/ENCFF943XYS/@@download/ENCFF943XYS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF896IHD bigBed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF943XYS 13932934 ENCODE Processing Pipeline 2cda00a2e6c9bfbd221ddaf2048e6e75 https://www.encodeproject.org/files/ENCFF896IHD/@@download/ENCFF896IHD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF973KKY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF419RSJ, ENCFF943XYS 634343 ENCODE Processing Pipeline ae1739828113549c6dc36dc3cc8fda42 https://www.encodeproject.org/files/ENCFF973KKY/@@download/ENCFF973KKY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF823VPJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF973KKY 1131787 ENCODE Processing Pipeline 50b2115c1c5650911cddcb17bdc4c2b4 https://www.encodeproject.org/files/ENCFF823VPJ/@@download/ENCFF823VPJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF234XJV fastq reads ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF321IVY 3619779322 Michael Snyder, Stanford 8ab676b230fab1a5b9ab0b0801be0e2d SRA:SRR6214028 https://www.encodeproject.org/files/ENCFF234XJV/@@download/ENCFF234XJV.fastq.gz Illumina HiSeq 4000 /files/ENCFF646DHK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF321IVY fastq reads ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF234XJV 3814605365 Michael Snyder, Stanford d29aca3cd58b74881433a609b2a1e614 SRA:SRR6214028 https://www.encodeproject.org/files/ENCFF321IVY/@@download/ENCFF321IVY.fastq.gz Illumina HiSeq 4000 /files/ENCFF973DKC/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF433GTT bam unfiltered alignments ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF234XJV, ENCFF321IVY, ENCFF807MUK 7040908248 ENCODE Processing Pipeline 6962112f9fbc306e31e0d92313f29304 https://www.encodeproject.org/files/ENCFF433GTT/@@download/ENCFF433GTT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF059ALD bam unfiltered alignments ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF234XJV, ENCFF321IVY, ENCFF643CGH 7048569698 ENCODE Processing Pipeline 57700d4c49c2b200d4b626ae444dee29 https://www.encodeproject.org/files/ENCFF059ALD/@@download/ENCFF059ALD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF467EPK bam alignments ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF234XJV, ENCFF321IVY, ENCFF643CGH 4887815357 ENCODE Processing Pipeline 5d6a0d51a0153132b3436cf26548dda7 https://www.encodeproject.org/files/ENCFF467EPK/@@download/ENCFF467EPK.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF034SMD bam alignments ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF234XJV, ENCFF321IVY, ENCFF807MUK 4877893897 ENCODE Processing Pipeline 23efe46ed9555f25af0188a5bafe9194 https://www.encodeproject.org/files/ENCFF034SMD/@@download/ENCFF034SMD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF453RMU bigWig signal p-value ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF034SMD, ENCFF106RXX 1702006952 ENCODE Processing Pipeline 72c4c263ef12880fce0c19fa37588b73 https://www.encodeproject.org/files/ENCFF453RMU/@@download/ENCFF453RMU.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF891YYJ bigWig fold change over control ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF034SMD, ENCFF106RXX 1748142627 ENCODE Processing Pipeline c7dbb3ec308e02016727cc86b48c7e7f https://www.encodeproject.org/files/ENCFF891YYJ/@@download/ENCFF891YYJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF230HWI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF246HSO 285101 ENCODE Processing Pipeline d81233d03fbdee0425933ede6e8ca42b https://www.encodeproject.org/files/ENCFF230HWI/@@download/ENCFF230HWI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF042PKM bigBed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF246HSO 11358471 ENCODE Processing Pipeline 46d267057f440abf53a173f1c7dda033 https://www.encodeproject.org/files/ENCFF042PKM/@@download/ENCFF042PKM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF772CHD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF230HWI 557892 ENCODE Processing Pipeline eeab4413d3ba7e0ece0e8baab2b20d14 https://www.encodeproject.org/files/ENCFF772CHD/@@download/ENCFF772CHD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF246HSO bed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF034SMD, ENCFF106RXX 6662756 ENCODE Processing Pipeline 75914ddd368c4257b7d42101e337ff94 https://www.encodeproject.org/files/ENCFF246HSO/@@download/ENCFF246HSO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF637OOY bed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF278DTC, ENCFF467EPK 6665880 ENCODE Processing Pipeline 14e0d31426bf6097a380272c8d330cc2 https://www.encodeproject.org/files/ENCFF637OOY/@@download/ENCFF637OOY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF206ZES bigBed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF637OOY 11370830 ENCODE Processing Pipeline 0d673a988204b03b710d781f47265985 https://www.encodeproject.org/files/ENCFF206ZES/@@download/ENCFF206ZES.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF615AFS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF637OOY 285010 ENCODE Processing Pipeline b67aa9433ef56b2dd8c8a4ad359b1b35 https://www.encodeproject.org/files/ENCFF615AFS/@@download/ENCFF615AFS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF669WRR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF615AFS 558676 ENCODE Processing Pipeline 89f89c8118313256e1eb46231e022434 https://www.encodeproject.org/files/ENCFF669WRR/@@download/ENCFF669WRR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF794MMP bigWig signal p-value ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF278DTC, ENCFF467EPK 1537454201 ENCODE Processing Pipeline 6bbf10beaf7c303294b5a0e424566623 https://www.encodeproject.org/files/ENCFF794MMP/@@download/ENCFF794MMP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF903AWD bigWig fold change over control ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF278DTC, ENCFF467EPK 1763134299 ENCODE Processing Pipeline 478a2dd0496f3344a27c52d4d4617ad3 https://www.encodeproject.org/files/ENCFF903AWD/@@download/ENCFF903AWD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF717LYI fastq reads ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF871GPP 3193221878 Richard Myers, HAIB c5cb9bf8733b06965bb43ac8571c4a65 SRA:SRR6213934 https://www.encodeproject.org/files/ENCFF717LYI/@@download/ENCFF717LYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF184TJX/ released antibody characterized with exemption missing control alignments ENCFF871GPP fastq reads ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF717LYI 3258535965 Richard Myers, HAIB a09ab9431598ed69f11b212e746e6a9e SRA:SRR6213934 https://www.encodeproject.org/files/ENCFF871GPP/@@download/ENCFF871GPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF035HZW/ released antibody characterized with exemption missing control alignments ENCFF254ZJE bam unfiltered alignments ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF717LYI, ENCFF807MUK, ENCFF871GPP 7435021739 ENCODE Processing Pipeline 6bffe8fe53fc572e65977a35cf7c8757 https://www.encodeproject.org/files/ENCFF254ZJE/@@download/ENCFF254ZJE.bam hg19 released antibody characterized with exemption missing control alignments ENCFF515DIW bam alignments ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF717LYI, ENCFF807MUK, ENCFF871GPP 5176351985 ENCODE Processing Pipeline 23472d86481e48aba8bd058945077839 https://www.encodeproject.org/files/ENCFF515DIW/@@download/ENCFF515DIW.bam hg19 released antibody characterized with exemption missing control alignments ENCFF219BLO bam unfiltered alignments ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF717LYI, ENCFF871GPP 7463284037 ENCODE Processing Pipeline 8489cbf9ddd04070b0cf2950c1bd415e https://www.encodeproject.org/files/ENCFF219BLO/@@download/ENCFF219BLO.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF169HTN bam alignments ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF717LYI, ENCFF871GPP 5180266704 ENCODE Processing Pipeline fcb4cb4fe6f7aa396a79d272cbece828 https://www.encodeproject.org/files/ENCFF169HTN/@@download/ENCFF169HTN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF116JXQ bigWig signal p-value ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF169HTN 1058442547 ENCODE Processing Pipeline 706ffedf116f447d6834003539aa17e9 https://www.encodeproject.org/files/ENCFF116JXQ/@@download/ENCFF116JXQ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF587VFM bigWig fold change over control ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF169HTN 1442396054 ENCODE Processing Pipeline 4f71ed4b86386777b6ef7d24b899c64b https://www.encodeproject.org/files/ENCFF587VFM/@@download/ENCFF587VFM.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF047TQD bigBed narrowPeak peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF797KQK 11590773 ENCODE Processing Pipeline 4df2b04833e1bd72b666bd3490c14a15 https://www.encodeproject.org/files/ENCFF047TQD/@@download/ENCFF047TQD.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF797KQK bed narrowPeak peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF169HTN 6074719 ENCODE Processing Pipeline 0729b3f073994191e9d2f45ee4a87553 https://www.encodeproject.org/files/ENCFF797KQK/@@download/ENCFF797KQK.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF169FFA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF797KQK 296099 ENCODE Processing Pipeline ba3d346641cd9e4fbb89a59cba2772b0 https://www.encodeproject.org/files/ENCFF169FFA/@@download/ENCFF169FFA.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF760UXE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF169FFA 561151 ENCODE Processing Pipeline bd145bb10815b73c217e974bf5fb7cda https://www.encodeproject.org/files/ENCFF760UXE/@@download/ENCFF760UXE.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF217INB bigWig fold change over control ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF515DIW 1455683870 ENCODE Processing Pipeline e0712c4fe8f4f19e3f8d68fbd212bd46 https://www.encodeproject.org/files/ENCFF217INB/@@download/ENCFF217INB.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF780GBG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF531NFE 554481 ENCODE Processing Pipeline 63f1b71e207535f5bd2025dc23e18885 https://www.encodeproject.org/files/ENCFF780GBG/@@download/ENCFF780GBG.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF750XPB bigWig signal p-value ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF515DIW 1059275346 ENCODE Processing Pipeline 7d7286649547b9a05d2faf7da634ed6c https://www.encodeproject.org/files/ENCFF750XPB/@@download/ENCFF750XPB.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF817OVB bed narrowPeak peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF515DIW 6077512 ENCODE Processing Pipeline 2fede9d02cf0ca5fc60ea7dbc30148c1 https://www.encodeproject.org/files/ENCFF817OVB/@@download/ENCFF817OVB.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF724YOE bigBed narrowPeak peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF817OVB 11577592 ENCODE Processing Pipeline 7b59f43f31272b8477c1957b8e5177c9 https://www.encodeproject.org/files/ENCFF724YOE/@@download/ENCFF724YOE.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF531NFE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF817OVB 293268 ENCODE Processing Pipeline f63450c53cb4521a536bafa63dbb19e9 https://www.encodeproject.org/files/ENCFF531NFE/@@download/ENCFF531NFE.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF485IHI fastq reads ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 588794480 Xiang-Dong Fu, UCSD 68ea857e0bb36973f6bf1fea403195ed SRA:SRR6212593 https://www.encodeproject.org/files/ENCFF485IHI/@@download/ENCFF485IHI.fastq.gz Illumina HiSeq 2500 /files/ENCFF089EYX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF676SIM fastq reads ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 735942386 Xiang-Dong Fu, UCSD 3abe9f92aadfdc5959dbd4614844dc0b SRA:SRR6212594 https://www.encodeproject.org/files/ENCFF676SIM/@@download/ENCFF676SIM.fastq.gz Illumina HiSeq 2500 /files/ENCFF419XJY/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF178QOE bam unfiltered alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF485IHI, ENCFF807MUK 796133545 ENCODE Processing Pipeline bfa0ea4f74a837ffd70c7daebbe257ac https://www.encodeproject.org/files/ENCFF178QOE/@@download/ENCFF178QOE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF974IYP bam unfiltered alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF485IHI, ENCFF643CGH 798518590 ENCODE Processing Pipeline 6df93c80f3645d67d93dbed98e651c2c https://www.encodeproject.org/files/ENCFF974IYP/@@download/ENCFF974IYP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF641OBF bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF485IHI, ENCFF643CGH 469676118 ENCODE Processing Pipeline a9205be45f820d034ddeecfa506dd283 https://www.encodeproject.org/files/ENCFF641OBF/@@download/ENCFF641OBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF818HIH bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF485IHI, ENCFF807MUK 470289195 ENCODE Processing Pipeline edd428e000e1c7100391a00ecad0a122 https://www.encodeproject.org/files/ENCFF818HIH/@@download/ENCFF818HIH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF224GTG bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF676SIM, ENCFF807MUK 510969265 ENCODE Processing Pipeline 70d1a1fd863afd96c4d038469ab35e96 https://www.encodeproject.org/files/ENCFF224GTG/@@download/ENCFF224GTG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF076NZJ bam unfiltered alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF676SIM, ENCFF807MUK 966727626 ENCODE Processing Pipeline 5f5b423599568082f2d7f042a8587a99 https://www.encodeproject.org/files/ENCFF076NZJ/@@download/ENCFF076NZJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF408AOV bam unfiltered alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF676SIM 970206041 ENCODE Processing Pipeline 1eb942b16e5236cdf64223e9845e7513 https://www.encodeproject.org/files/ENCFF408AOV/@@download/ENCFF408AOV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF408GAN bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF676SIM 510389308 ENCODE Processing Pipeline 9c2327e622a30c6c244e305107892f0c https://www.encodeproject.org/files/ENCFF408GAN/@@download/ENCFF408GAN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF783FTH bigWig signal p-value ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF818HIH 454731330 ENCODE Processing Pipeline a011da42d62b07961a5103a338f1a622 https://www.encodeproject.org/files/ENCFF783FTH/@@download/ENCFF783FTH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF409XKG bigWig signal p-value ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF224GTG, ENCFF321CYT, ENCFF456BYT, ENCFF818HIH 1053371521 ENCODE Processing Pipeline 785980c10ea2ca4fd4eed6adb1dd0164 https://www.encodeproject.org/files/ENCFF409XKG/@@download/ENCFF409XKG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF485PMQ bigWig fold change over control ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF818HIH 335554921 ENCODE Processing Pipeline 24534cfcf130fdce8328d9e2d3ca7bce https://www.encodeproject.org/files/ENCFF485PMQ/@@download/ENCFF485PMQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF629KZP bigWig signal p-value ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF224GTG, ENCFF321CYT 504390777 ENCODE Processing Pipeline 9583e1b19c8c44b561e909cb97de0842 https://www.encodeproject.org/files/ENCFF629KZP/@@download/ENCFF629KZP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF183YMK bigWig fold change over control ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF224GTG, ENCFF321CYT 375580110 ENCODE Processing Pipeline f403e746308146d564ae7dee02f0efa2 https://www.encodeproject.org/files/ENCFF183YMK/@@download/ENCFF183YMK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF405IFO bigWig fold change over control ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF224GTG, ENCFF321CYT, ENCFF456BYT, ENCFF818HIH 839115829 ENCODE Processing Pipeline 79de97ec6af6457b00621cf5c715e206 https://www.encodeproject.org/files/ENCFF405IFO/@@download/ENCFF405IFO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF789HHG bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF224GTG, ENCFF321CYT 4774722 ENCODE Processing Pipeline 2b980e8a647d156579335201a39ef984 https://www.encodeproject.org/files/ENCFF789HHG/@@download/ENCFF789HHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF176TKM bigBed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF690XXK 13061280 ENCODE Processing Pipeline f907f3e8e9b2b1eec9e8af593c954416 https://www.encodeproject.org/files/ENCFF176TKM/@@download/ENCFF176TKM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF690XXK bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF818HIH 5047502 ENCODE Processing Pipeline fa771e766c74b2ac2c02538825850bed https://www.encodeproject.org/files/ENCFF690XXK/@@download/ENCFF690XXK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF151HYU bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF224GTG, ENCFF321CYT, ENCFF456BYT, ENCFF818HIH 6362327 ENCODE Processing Pipeline c316effd94b7f25ca9f99bbb89663fa4 https://www.encodeproject.org/files/ENCFF151HYU/@@download/ENCFF151HYU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF095GRH bigBed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF151HYU 13414296 ENCODE Processing Pipeline e59dc2d3dc84f02c75f9034b38985c6b https://www.encodeproject.org/files/ENCFF095GRH/@@download/ENCFF095GRH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF392KOM bigBed narrowPeak optimal idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF617CAZ 107171 ENCODE Processing Pipeline 0a8d3b20b31500d366ea6fce49c49816 https://www.encodeproject.org/files/ENCFF392KOM/@@download/ENCFF392KOM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF477ZCJ bigBed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF789HHG 10966192 ENCODE Processing Pipeline 7436eebe62b456d71df42069e5647af5 https://www.encodeproject.org/files/ENCFF477ZCJ/@@download/ENCFF477ZCJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF713VPX bigBed narrowPeak conservative idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF975SNX 95254 ENCODE Processing Pipeline 244bb238b6790a88b0beb769e011f71e https://www.encodeproject.org/files/ENCFF713VPX/@@download/ENCFF713VPX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF617CAZ bed narrowPeak optimal idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF151HYU, ENCFF690XXK, ENCFF789HHG 14792 ENCODE Processing Pipeline 454b3aaf30cc5d814dc031bb5e8ca333 https://www.encodeproject.org/files/ENCFF617CAZ/@@download/ENCFF617CAZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF975SNX bed narrowPeak conservative idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF151HYU, ENCFF690XXK, ENCFF789HHG 10928 ENCODE Processing Pipeline 3e6254c2f3895cc2ed733012a597f5f6 https://www.encodeproject.org/files/ENCFF975SNX/@@download/ENCFF975SNX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF927TRB bigWig signal p-value ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF408GAN, ENCFF641OBF, ENCFF661ZRO, ENCFF872FDX 852510562 ENCODE Processing Pipeline 1adbfddc9d363ebd58049135bb887256 https://www.encodeproject.org/files/ENCFF927TRB/@@download/ENCFF927TRB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF017LTH bigWig signal p-value ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF641OBF, ENCFF661ZRO 468033123 ENCODE Processing Pipeline e2b9c0bba7ae9586469689946ec14a44 https://www.encodeproject.org/files/ENCFF017LTH/@@download/ENCFF017LTH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF331JDA bigWig signal p-value ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF408GAN, ENCFF872FDX 513414050 ENCODE Processing Pipeline e1154725f3f2d00034d605f6e502e5cc https://www.encodeproject.org/files/ENCFF331JDA/@@download/ENCFF331JDA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF998ZUC bigWig fold change over control ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF408GAN, ENCFF641OBF, ENCFF661ZRO, ENCFF872FDX 808617521 ENCODE Processing Pipeline b9cfa6bf29d59e3b1f5fe39e446a8048 https://www.encodeproject.org/files/ENCFF998ZUC/@@download/ENCFF998ZUC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF603GHG bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF641OBF, ENCFF661ZRO 4971802 ENCODE Processing Pipeline d37cf813e2e91871901aa7e7d88da0e6 https://www.encodeproject.org/files/ENCFF603GHG/@@download/ENCFF603GHG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF346NMC bed narrowPeak conservative idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF010DBI, ENCFF419RSJ, ENCFF603GHG, ENCFF979TPQ 9205 ENCODE Processing Pipeline 98ce6d730ab5245aa16eba89d8f019a2 https://www.encodeproject.org/files/ENCFF346NMC/@@download/ENCFF346NMC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF890FHB bigWig fold change over control ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF641OBF, ENCFF661ZRO 335173078 ENCODE Processing Pipeline 88a79c33161633576fb4b5b5acdc1bfd https://www.encodeproject.org/files/ENCFF890FHB/@@download/ENCFF890FHB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF010DBI bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF408GAN, ENCFF872FDX 4768702 ENCODE Processing Pipeline ad202b7b7bb662274f63c91c08feabad https://www.encodeproject.org/files/ENCFF010DBI/@@download/ENCFF010DBI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF979TPQ bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF408GAN, ENCFF641OBF, ENCFF661ZRO, ENCFF872FDX 6235743 ENCODE Processing Pipeline c01d1a59261478c3f7b54959e1a1e8cb https://www.encodeproject.org/files/ENCFF979TPQ/@@download/ENCFF979TPQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF133HAS bigBed narrowPeak conservative idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF346NMC 92893 ENCODE Processing Pipeline 8bdee13dde06d8750b8281b4af2cf397 https://www.encodeproject.org/files/ENCFF133HAS/@@download/ENCFF133HAS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF710LLF bed narrowPeak optimal idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF010DBI, ENCFF419RSJ, ENCFF603GHG, ENCFF979TPQ 13465 ENCODE Processing Pipeline 8feb6509c8f0d41bf06713a6127b027c https://www.encodeproject.org/files/ENCFF710LLF/@@download/ENCFF710LLF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF985GIN bigWig fold change over control ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF408GAN, ENCFF872FDX 382670465 ENCODE Processing Pipeline 18210ad2024b00ac32146d7c83344023 https://www.encodeproject.org/files/ENCFF985GIN/@@download/ENCFF985GIN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF189KCM bigBed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF603GHG 10914877 ENCODE Processing Pipeline a4f5aff4e28ed5d5a34f5b31b69b28f6 https://www.encodeproject.org/files/ENCFF189KCM/@@download/ENCFF189KCM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF030GJB bigBed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF010DBI 10974265 ENCODE Processing Pipeline 0f8ac192787ca5ee9d2ae6fa7b626064 https://www.encodeproject.org/files/ENCFF030GJB/@@download/ENCFF030GJB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF402PFE bigBed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF979TPQ 13450826 ENCODE Processing Pipeline 41b2e0ed800bc53b230eaf5169da590a https://www.encodeproject.org/files/ENCFF402PFE/@@download/ENCFF402PFE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF932TEL bigBed narrowPeak optimal idr thresholded peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF710LLF 106099 ENCODE Processing Pipeline 35f7b5c473f6fc0e2843871d6bde1b68 https://www.encodeproject.org/files/ENCFF932TEL/@@download/ENCFF932TEL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF278AAS fastq reads ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF662XQN 2630761838 Richard Myers, HAIB 9b4d6bd9c65e51f4479f3ef5a698d2a8 https://www.encodeproject.org/files/ENCFF278AAS/@@download/ENCFF278AAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF267WYT/ released antibody characterized with exemption experiment not submitted to GEO ENCFF662XQN fastq reads ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF278AAS 2746850468 Richard Myers, HAIB 4f61de4dd4fa7bea0b7499e745c78f7e https://www.encodeproject.org/files/ENCFF662XQN/@@download/ENCFF662XQN.fastq.gz Illumina HiSeq 2000 /files/ENCFF953BWE/ released antibody characterized with exemption experiment not submitted to GEO ENCFF882XMI bam alignments ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF278AAS, ENCFF662XQN, ENCFF807MUK 4322413820 ENCODE Processing Pipeline 7818b39ae0b59bb3390ddeb6c28c4d52 https://www.encodeproject.org/files/ENCFF882XMI/@@download/ENCFF882XMI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF032MAC bam unfiltered alignments ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF278AAS, ENCFF643CGH, ENCFF662XQN 5801658803 ENCODE Processing Pipeline d1856d8ceddecefaebb454c2f2116c89 https://www.encodeproject.org/files/ENCFF032MAC/@@download/ENCFF032MAC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF023BZT bam unfiltered alignments ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF278AAS, ENCFF662XQN, ENCFF807MUK 5797408729 ENCODE Processing Pipeline 714586466e0615609ddc9c9d72e0333e https://www.encodeproject.org/files/ENCFF023BZT/@@download/ENCFF023BZT.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF723HAH bam alignments ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF278AAS, ENCFF643CGH, ENCFF662XQN 4323740572 ENCODE Processing Pipeline 9a3e1895e4c4326b724804d0847bd2be https://www.encodeproject.org/files/ENCFF723HAH/@@download/ENCFF723HAH.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF194RUS bigWig signal p-value ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF481ALK, ENCFF723HAH 881508397 ENCODE Processing Pipeline b05582c29306b70af2ab4aaace36910e https://www.encodeproject.org/files/ENCFF194RUS/@@download/ENCFF194RUS.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF487HMW bigBed narrowPeak peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF937JXF 12383276 ENCODE Processing Pipeline 3700d708a2619e1a7e64e09e29b99436 https://www.encodeproject.org/files/ENCFF487HMW/@@download/ENCFF487HMW.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF748RWG bigWig fold change over control ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF481ALK, ENCFF723HAH 844428202 ENCODE Processing Pipeline e993d77a6220530894d01e6f8fde91ea https://www.encodeproject.org/files/ENCFF748RWG/@@download/ENCFF748RWG.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF937JXF bed narrowPeak peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF481ALK, ENCFF723HAH 6781296 ENCODE Processing Pipeline fbe397a7a139cea49c0a5ee4c831e237 https://www.encodeproject.org/files/ENCFF937JXF/@@download/ENCFF937JXF.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF185NAU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF937JXF 1226501 ENCODE Processing Pipeline 8339e26b1f563980e521b09e7a0ab3aa https://www.encodeproject.org/files/ENCFF185NAU/@@download/ENCFF185NAU.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF255KKM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF185NAU 2030829 ENCODE Processing Pipeline fb24094c0c023d16414f552ac2d8816f https://www.encodeproject.org/files/ENCFF255KKM/@@download/ENCFF255KKM.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF416BZK bigWig signal p-value ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF807EBL, ENCFF882XMI 875467208 ENCODE Processing Pipeline 596e5c02d06ca3d2a06d8debdbbeb27f https://www.encodeproject.org/files/ENCFF416BZK/@@download/ENCFF416BZK.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF563XUY bigWig fold change over control ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF807EBL, ENCFF882XMI 844188903 ENCODE Processing Pipeline 1d92c36f60a46ab750f3dfb7e7298c74 https://www.encodeproject.org/files/ENCFF563XUY/@@download/ENCFF563XUY.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF076OEB bed narrowPeak peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF807EBL, ENCFF882XMI 7103377 ENCODE Processing Pipeline f3c6bfeb93ee4f0d076ce1d1802a13c5 https://www.encodeproject.org/files/ENCFF076OEB/@@download/ENCFF076OEB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF431QZC bigBed narrowPeak peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF076OEB 12787686 ENCODE Processing Pipeline 031d13d9ce0cf0e0a43f7f47581eba3c https://www.encodeproject.org/files/ENCFF431QZC/@@download/ENCFF431QZC.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF453UXT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF845DVI 2695468 ENCODE Processing Pipeline 54429bc95f95a10addbe6ad329906c94 https://www.encodeproject.org/files/ENCFF453UXT/@@download/ENCFF453UXT.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF845DVI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF076OEB 1274074 ENCODE Processing Pipeline 0fe2b9afe5a520d240d79944b9173975 https://www.encodeproject.org/files/ENCFF845DVI/@@download/ENCFF845DVI.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF914FOC fastq reads ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2564142105 Richard Myers, HAIB 0e99cdac3410f44de8d383393855866f SRA:SRR5339272 https://www.encodeproject.org/files/ENCFF914FOC/@@download/ENCFF914FOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF948EZE fastq reads ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2338080274 Richard Myers, HAIB 9e75a3b0235b8dfc92996efd8d950296 SRA:SRR5339273 https://www.encodeproject.org/files/ENCFF948EZE/@@download/ENCFF948EZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF923LAX bam unfiltered alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF914FOC 3036640799 ENCODE Processing Pipeline 28f0cb5d8c7eab00138b6f3b2a1c67fb https://www.encodeproject.org/files/ENCFF923LAX/@@download/ENCFF923LAX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF706OKF bam unfiltered alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF948EZE 2747983732 ENCODE Processing Pipeline db0c1178c125f5d7766834e6dc253007 https://www.encodeproject.org/files/ENCFF706OKF/@@download/ENCFF706OKF.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF359SGD bam unfiltered alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF948EZE 2754161642 ENCODE Processing Pipeline 42ab70230f27261fbdcd5d8aed66abaf https://www.encodeproject.org/files/ENCFF359SGD/@@download/ENCFF359SGD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF545AHU bam unfiltered alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF914FOC 3043042535 ENCODE Processing Pipeline 90a91b8c73b8ab2370d12a4955f48a02 https://www.encodeproject.org/files/ENCFF545AHU/@@download/ENCFF545AHU.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF408DIJ bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF948EZE 1959238495 ENCODE Processing Pipeline b30f51db99abbac2317b49f0beb209ad https://www.encodeproject.org/files/ENCFF408DIJ/@@download/ENCFF408DIJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF358IWC bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF948EZE 1958243461 ENCODE Processing Pipeline 048ec52c66b355366f02126b7ec09dff https://www.encodeproject.org/files/ENCFF358IWC/@@download/ENCFF358IWC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF511GQK bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF914FOC 2187227073 ENCODE Processing Pipeline e883bd578ec65c303c9c8ea0cdb85537 https://www.encodeproject.org/files/ENCFF511GQK/@@download/ENCFF511GQK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF317HWD bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF914FOC 2188286279 ENCODE Processing Pipeline f6fd800b285c50e471c3b428c109b477 https://www.encodeproject.org/files/ENCFF317HWD/@@download/ENCFF317HWD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF576JWY bigWig signal p-value ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF408DIJ 639055754 ENCODE Processing Pipeline 2777869ac15415601f59a47c4cf3d047 https://www.encodeproject.org/files/ENCFF576JWY/@@download/ENCFF576JWY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF382CSN bigWig signal p-value ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF317HWD 666312620 ENCODE Processing Pipeline 554150fba986b22c2c16acc97a4786eb https://www.encodeproject.org/files/ENCFF382CSN/@@download/ENCFF382CSN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF648HUD bigWig signal p-value ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317HWD, ENCFF408DIJ 672788774 ENCODE Processing Pipeline e17c8dfcc03550faa225f46381cd582d https://www.encodeproject.org/files/ENCFF648HUD/@@download/ENCFF648HUD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF485YRO bigWig fold change over control ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF317HWD 664463237 ENCODE Processing Pipeline ccc006835a54e418921b73af571a4338 https://www.encodeproject.org/files/ENCFF485YRO/@@download/ENCFF485YRO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF311BHZ bigWig fold change over control ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317HWD, ENCFF408DIJ 1058388316 ENCODE Processing Pipeline c2b33ffcc2412f562dc06cdd546b8ba6 https://www.encodeproject.org/files/ENCFF311BHZ/@@download/ENCFF311BHZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF564IUH bigBed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF685NJO 13080776 ENCODE Processing Pipeline 7e362658baa45b9803bf63aa19bb71b9 https://www.encodeproject.org/files/ENCFF564IUH/@@download/ENCFF564IUH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF492TSB bigBed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF716PEJ 13041849 ENCODE Processing Pipeline 5d9580f5a09639190a85aba258ef2a3c https://www.encodeproject.org/files/ENCFF492TSB/@@download/ENCFF492TSB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF088QFL bigBed narrowPeak conservative idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF253LJN 1289435 ENCODE Processing Pipeline 1ffd8b668d06b79244a879929765ca4e https://www.encodeproject.org/files/ENCFF088QFL/@@download/ENCFF088QFL.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454ZXF bigWig fold change over control ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF408DIJ 610415142 ENCODE Processing Pipeline a75c1ad1287f7b5e582253f9931e862e https://www.encodeproject.org/files/ENCFF454ZXF/@@download/ENCFF454ZXF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF364EBP bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF408DIJ 6203919 ENCODE Processing Pipeline bd3d66e8cf28059aa7b4fdabd790129c https://www.encodeproject.org/files/ENCFF364EBP/@@download/ENCFF364EBP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685NJO bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF317HWD 6177362 ENCODE Processing Pipeline 80e654e9eb01c756f85d18b0f88c7996 https://www.encodeproject.org/files/ENCFF685NJO/@@download/ENCFF685NJO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF716PEJ bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317HWD, ENCFF408DIJ 6784964 ENCODE Processing Pipeline 8ef1ce3795320567e4feeb8bc9f02480 https://www.encodeproject.org/files/ENCFF716PEJ/@@download/ENCFF716PEJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF253LJN bed narrowPeak conservative idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF364EBP, ENCFF419RSJ, ENCFF685NJO, ENCFF716PEJ 669671 ENCODE Processing Pipeline aadc5ef2ae1d57fece3a50f5fd82bc4e https://www.encodeproject.org/files/ENCFF253LJN/@@download/ENCFF253LJN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF081TRD bigBed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF364EBP 13131219 ENCODE Processing Pipeline 3f174606531e40ae8154362e884a38b9 https://www.encodeproject.org/files/ENCFF081TRD/@@download/ENCFF081TRD.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF014UTU bed narrowPeak optimal idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF364EBP, ENCFF419RSJ, ENCFF685NJO, ENCFF716PEJ 682689 ENCODE Processing Pipeline d073c03fd860893c7b587ec1e14f3362 https://www.encodeproject.org/files/ENCFF014UTU/@@download/ENCFF014UTU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF206FLX bigBed narrowPeak optimal idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF014UTU 1310050 ENCODE Processing Pipeline 7858e0098ad98b2da00c37bd4777c52f https://www.encodeproject.org/files/ENCFF206FLX/@@download/ENCFF206FLX.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF418PBN bigWig signal p-value ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF511GQK 1285044768 ENCODE Processing Pipeline 779a48f7bf8baeea89d2a3f69895e7e0 https://www.encodeproject.org/files/ENCFF418PBN/@@download/ENCFF418PBN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF087FSW bigWig signal p-value ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF358IWC 1323163518 ENCODE Processing Pipeline 2b61ed8981a8dc800325aad5e29343f3 https://www.encodeproject.org/files/ENCFF087FSW/@@download/ENCFF087FSW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF216SNF bigWig signal p-value ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF358IWC, ENCFF511GQK 1681906352 ENCODE Processing Pipeline e33226ad10173d9c88f925808f10fa83 https://www.encodeproject.org/files/ENCFF216SNF/@@download/ENCFF216SNF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF878XUT bigWig fold change over control ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF511GQK 1215650991 ENCODE Processing Pipeline 31e389bbb4dfa56c64410812ce147f98 https://www.encodeproject.org/files/ENCFF878XUT/@@download/ENCFF878XUT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF720HCY bigWig fold change over control ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF358IWC 1129609634 ENCODE Processing Pipeline 8ae2265dcb86e9a7ce888db6eda06aa0 https://www.encodeproject.org/files/ENCFF720HCY/@@download/ENCFF720HCY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF160GBM bigWig fold change over control ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF358IWC, ENCFF511GQK 1641487454 ENCODE Processing Pipeline a7d6ed37582cdb57a1e74007e1f2b687 https://www.encodeproject.org/files/ENCFF160GBM/@@download/ENCFF160GBM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF035ILO bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF511GQK 6746278 ENCODE Processing Pipeline cc33b5ab9cc746d3349b6bc34bb21e0d https://www.encodeproject.org/files/ENCFF035ILO/@@download/ENCFF035ILO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF855PEP bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF358IWC 6627792 ENCODE Processing Pipeline 622c25fdbfe37b01dfb21de907e24a14 https://www.encodeproject.org/files/ENCFF855PEP/@@download/ENCFF855PEP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF382EUL bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF358IWC, ENCFF511GQK 6970926 ENCODE Processing Pipeline 13ea798246ba8e0b529c740c40ca03ef https://www.encodeproject.org/files/ENCFF382EUL/@@download/ENCFF382EUL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851FBL bigBed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF035ILO 13120449 ENCODE Processing Pipeline 5e16ec5a855aca96ae0b9f139f5cc7dc https://www.encodeproject.org/files/ENCFF851FBL/@@download/ENCFF851FBL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF102UFN bigBed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF855PEP 13090627 ENCODE Processing Pipeline 15e78114da44fef4bf0badf1a33e98f8 https://www.encodeproject.org/files/ENCFF102UFN/@@download/ENCFF102UFN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF333VQM bigBed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF382EUL 13118764 ENCODE Processing Pipeline a71e44a1a642ec2b8c6ecb36227b9708 https://www.encodeproject.org/files/ENCFF333VQM/@@download/ENCFF333VQM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF309LPU bigBed narrowPeak conservative idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF791AQG 1317710 ENCODE Processing Pipeline 148be1a7cc27f1abfd88bcaf9bd283f3 https://www.encodeproject.org/files/ENCFF309LPU/@@download/ENCFF309LPU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF791AQG bed narrowPeak conservative idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF035ILO, ENCFF382EUL, ENCFF855PEP 658009 ENCODE Processing Pipeline 3ae198a9077876276e399aafd1b061e4 https://www.encodeproject.org/files/ENCFF791AQG/@@download/ENCFF791AQG.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF693ZXB bed narrowPeak optimal idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF035ILO, ENCFF382EUL, ENCFF855PEP 668818 ENCODE Processing Pipeline a1570bdc5faa2092aabd6469237691e8 https://www.encodeproject.org/files/ENCFF693ZXB/@@download/ENCFF693ZXB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF084HBG bigBed narrowPeak optimal idr thresholded peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF693ZXB 1336467 ENCODE Processing Pipeline ffdc710b74760432c74d67d0c7050427 https://www.encodeproject.org/files/ENCFF084HBG/@@download/ENCFF084HBG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF644XXX fastq reads ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF754KUW 2499342039 Richard Myers, HAIB 7c1c406958d8c342902a95dee728f9fb SRA:SRR6213497 https://www.encodeproject.org/files/ENCFF644XXX/@@download/ENCFF644XXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF963KVX/ released antibody characterized with exemption missing control alignments ENCFF754KUW fastq reads ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF644XXX 2603918476 Richard Myers, HAIB ab4b28b2508c154c5b76be2bcc36ae82 SRA:SRR6213497 https://www.encodeproject.org/files/ENCFF754KUW/@@download/ENCFF754KUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF320JDA/ released antibody characterized with exemption missing control alignments ENCFF131NUF bam unfiltered alignments ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF644XXX, ENCFF754KUW, ENCFF807MUK 6054924997 ENCODE Processing Pipeline 8715ae6d91c40d68e356d7ca5276569e https://www.encodeproject.org/files/ENCFF131NUF/@@download/ENCFF131NUF.bam hg19 released antibody characterized with exemption missing control alignments ENCFF677JZD bam alignments ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF644XXX, ENCFF754KUW, ENCFF807MUK 4544080665 ENCODE Processing Pipeline 056cf7114e1a1651dde3f0d01b2d76d2 https://www.encodeproject.org/files/ENCFF677JZD/@@download/ENCFF677JZD.bam hg19 released antibody characterized with exemption missing control alignments ENCFF959BPW bam alignments ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF644XXX, ENCFF754KUW 4548438620 ENCODE Processing Pipeline 9e40f0bf9305ba55784c40c0c11d160d https://www.encodeproject.org/files/ENCFF959BPW/@@download/ENCFF959BPW.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF799DKV bam unfiltered alignments ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF644XXX, ENCFF754KUW 6079592356 ENCODE Processing Pipeline d20e0ccc4dc93e758b7e841107ea416d https://www.encodeproject.org/files/ENCFF799DKV/@@download/ENCFF799DKV.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF094GOG bigWig signal p-value ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF959BPW 1282136868 ENCODE Processing Pipeline dac6bad3e8fa4a33c52e2530bdf601f4 https://www.encodeproject.org/files/ENCFF094GOG/@@download/ENCFF094GOG.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF913NGH bed narrowPeak peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF959BPW 6354728 ENCODE Processing Pipeline 4fcac3b48b7d80f23e7bbf569ccc7891 https://www.encodeproject.org/files/ENCFF913NGH/@@download/ENCFF913NGH.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF285GEA bigWig fold change over control ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF959BPW 1545844472 ENCODE Processing Pipeline 11596ac600353772946b44322386083f https://www.encodeproject.org/files/ENCFF285GEA/@@download/ENCFF285GEA.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF287SLI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF913NGH 114903 ENCODE Processing Pipeline ef99816f340c90684e5990282deaaae8 https://www.encodeproject.org/files/ENCFF287SLI/@@download/ENCFF287SLI.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF004LRJ bigBed narrowPeak peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF913NGH 11674251 ENCODE Processing Pipeline 283a84b0450b253ed3a964fec4544b45 https://www.encodeproject.org/files/ENCFF004LRJ/@@download/ENCFF004LRJ.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF735PFX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF287SLI 285184 ENCODE Processing Pipeline 582c9105ed07db58468cb698b750497c https://www.encodeproject.org/files/ENCFF735PFX/@@download/ENCFF735PFX.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF729MZG bigWig signal p-value ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF677JZD 1433495494 ENCODE Processing Pipeline e08a8c153510f398e8cac29e5d6649bf https://www.encodeproject.org/files/ENCFF729MZG/@@download/ENCFF729MZG.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF614IMK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF739FWZ 115482 ENCODE Processing Pipeline 3c18ad5b79e4c5f3da1d43034a750fc0 https://www.encodeproject.org/files/ENCFF614IMK/@@download/ENCFF614IMK.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF385LNT bigBed narrowPeak peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF739FWZ 11659372 ENCODE Processing Pipeline 5b5420780b8aef751663ed0b11a71e69 https://www.encodeproject.org/files/ENCFF385LNT/@@download/ENCFF385LNT.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF744VAK bigWig fold change over control ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF677JZD 1544169740 ENCODE Processing Pipeline 964a12ed055d2930a6eab7ad39f75711 https://www.encodeproject.org/files/ENCFF744VAK/@@download/ENCFF744VAK.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF739FWZ bed narrowPeak peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF677JZD 6349292 ENCODE Processing Pipeline 22d0680342d65f727917705d65ed0e92 https://www.encodeproject.org/files/ENCFF739FWZ/@@download/ENCFF739FWZ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF925YJF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF614IMK 283713 ENCODE Processing Pipeline ce92bdf78066a86c622fd9ccf84b38c5 https://www.encodeproject.org/files/ENCFF925YJF/@@download/ENCFF925YJF.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF132GDV fastq reads ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 1 100 paired-ended 1 ENCFF407ICD 5144338574 Michael Snyder, Stanford 79a5dda058fff6da46ef829f00b77d4e SRA:SRR6213668 https://www.encodeproject.org/files/ENCFF132GDV/@@download/ENCFF132GDV.fastq.gz Illumina HiSeq 4000 /files/ENCFF337NMZ/, /files/ENCFF437UBY/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF185PQG fastq reads ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 1 100 paired-ended 1 ENCFF835TQN 5244051608 Michael Snyder, Stanford 59adde701bf54c1d0e2a84a5b0763ec5 SRA:SRR6213667 https://www.encodeproject.org/files/ENCFF185PQG/@@download/ENCFF185PQG.fastq.gz Illumina HiSeq 4000 /files/ENCFF337NMZ/, /files/ENCFF437UBY/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF407ICD fastq reads ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 1 100 paired-ended 2 ENCFF132GDV 5667292884 Michael Snyder, Stanford 2d6d1cfc34fa9637fba9b4d87c6b137e SRA:SRR6213668 https://www.encodeproject.org/files/ENCFF407ICD/@@download/ENCFF407ICD.fastq.gz Illumina HiSeq 4000 /files/ENCFF337NMZ/, /files/ENCFF437UBY/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF835TQN fastq reads ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 1 100 paired-ended 2 ENCFF185PQG 5700489110 Michael Snyder, Stanford a1c56376ed9ec814934df5715d3c2413 SRA:SRR6213667 https://www.encodeproject.org/files/ENCFF835TQN/@@download/ENCFF835TQN.fastq.gz Illumina HiSeq 4000 /files/ENCFF337NMZ/, /files/ENCFF437UBY/ released mild to moderate bottlenecking, missing genetic modification characterization ENCFF330IUP bam unfiltered alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 100 ENCFF132GDV, ENCFF407ICD, ENCFF807MUK 10429291821 ENCODE Processing Pipeline 3da3816f664ba1e6cbb2cd9c6dd16a63 https://www.encodeproject.org/files/ENCFF330IUP/@@download/ENCFF330IUP.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF730WWH bam unfiltered alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 100 ENCFF185PQG, ENCFF643CGH, ENCFF835TQN 10505430388 ENCODE Processing Pipeline 0b6202cc080862dd0420556e35dc5e47 https://www.encodeproject.org/files/ENCFF730WWH/@@download/ENCFF730WWH.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF132BTU bam unfiltered alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 100 ENCFF185PQG, ENCFF807MUK, ENCFF835TQN 10481196585 ENCODE Processing Pipeline b6090bfa22a9d660a37a8bc447ea5c46 https://www.encodeproject.org/files/ENCFF132BTU/@@download/ENCFF132BTU.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF103HTZ bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 100 ENCFF185PQG, ENCFF643CGH, ENCFF835TQN 7571766071 ENCODE Processing Pipeline c8968eb921d448f82a37a8231bd04c24 https://www.encodeproject.org/files/ENCFF103HTZ/@@download/ENCFF103HTZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF693AQW bam unfiltered alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 100 ENCFF132GDV, ENCFF407ICD, ENCFF643CGH 10451696377 ENCODE Processing Pipeline 5dc19a4348ef862ea98c4adf71f27ff1 https://www.encodeproject.org/files/ENCFF693AQW/@@download/ENCFF693AQW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF864BUV bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 100 ENCFF132GDV, ENCFF407ICD, ENCFF643CGH 7520033153 ENCODE Processing Pipeline 2b74191a93e25d1546142efa483a86b7 https://www.encodeproject.org/files/ENCFF864BUV/@@download/ENCFF864BUV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF040FFN bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 100 ENCFF185PQG, ENCFF807MUK, ENCFF835TQN 7564460055 ENCODE Processing Pipeline 7f482572b7c932eb8ea0aa1a719130d1 https://www.encodeproject.org/files/ENCFF040FFN/@@download/ENCFF040FFN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF432JII bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 100 ENCFF132GDV, ENCFF407ICD, ENCFF807MUK 7513364466 ENCODE Processing Pipeline a5e9231f0643b0cd1014ce2adbf3313f https://www.encodeproject.org/files/ENCFF432JII/@@download/ENCFF432JII.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF217VGP bigWig fold change over control ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF127KUO, ENCFF432JII 1770966479 ENCODE Processing Pipeline a1f5fb67797507e3b6ee3e52bc8e4bb0 https://www.encodeproject.org/files/ENCFF217VGP/@@download/ENCFF217VGP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF250TCH bigBed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF849XOM 13283240 ENCODE Processing Pipeline 0bd2ea9cefac03a45b26f9bfd6410fff https://www.encodeproject.org/files/ENCFF250TCH/@@download/ENCFF250TCH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF646YVH bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF103HTZ, ENCFF874TOY 7249249 ENCODE Processing Pipeline 87221ddd88053e98de0b5f627f627d77 https://www.encodeproject.org/files/ENCFF646YVH/@@download/ENCFF646YVH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF744SVC bed narrowPeak optimal idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF225EQY, ENCFF228ORA, ENCFF849XOM 92239 ENCODE Processing Pipeline 640dd68dc008f1df30cb7d6f32a82845 https://www.encodeproject.org/files/ENCFF744SVC/@@download/ENCFF744SVC.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF733DGK bigWig signal p-value ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF040FFN, ENCFF127KUO 1194956180 ENCODE Processing Pipeline 324cb4df9003d186d793f77f8e45a69e https://www.encodeproject.org/files/ENCFF733DGK/@@download/ENCFF733DGK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF504AID bed narrowPeak conservative idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF225EQY, ENCFF228ORA, ENCFF849XOM 80776 ENCODE Processing Pipeline 06150697ff256e24616c22ace6080e0d https://www.encodeproject.org/files/ENCFF504AID/@@download/ENCFF504AID.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF374QAY bigBed narrowPeak conservative idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF504AID 241139 ENCODE Processing Pipeline 84dd8b99520433c86e66bf06c153b705 https://www.encodeproject.org/files/ENCFF374QAY/@@download/ENCFF374QAY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF236LKW bigWig fold change over control ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF040FFN, ENCFF127KUO 1813811667 ENCODE Processing Pipeline 074227fe587aaf9b9913887d766b0253 https://www.encodeproject.org/files/ENCFF236LKW/@@download/ENCFF236LKW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF487BCH bigBed narrowPeak optimal idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF744SVC 262081 ENCODE Processing Pipeline a221f10ec5ceff2219b1f9b96970dd5e https://www.encodeproject.org/files/ENCFF487BCH/@@download/ENCFF487BCH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF524JLL bigWig signal p-value ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF040FFN, ENCFF127KUO, ENCFF432JII 1085482127 ENCODE Processing Pipeline e45d44d56a8ff4b3d64184ac1692d6bf https://www.encodeproject.org/files/ENCFF524JLL/@@download/ENCFF524JLL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF136APZ bigWig fold change over control ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF040FFN, ENCFF127KUO, ENCFF432JII 2558324250 ENCODE Processing Pipeline d706486789df30970bffba9b85c34da3 https://www.encodeproject.org/files/ENCFF136APZ/@@download/ENCFF136APZ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF849XOM bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF127KUO, ENCFF432JII 7306581 ENCODE Processing Pipeline 569991f0b6311ded2e5751c48f9e24e0 https://www.encodeproject.org/files/ENCFF849XOM/@@download/ENCFF849XOM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF228ORA bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF040FFN, ENCFF127KUO, ENCFF432JII 7276095 ENCODE Processing Pipeline e9a5cd3ba5431dec031b1956d48404f2 https://www.encodeproject.org/files/ENCFF228ORA/@@download/ENCFF228ORA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF460YSG bigBed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF225EQY 13239662 ENCODE Processing Pipeline 8a1443ad98f6a7220c9370abdb2602cd https://www.encodeproject.org/files/ENCFF460YSG/@@download/ENCFF460YSG.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF033GIZ bigWig signal p-value ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF127KUO, ENCFF432JII 1129424509 ENCODE Processing Pipeline 2df9ad39df612f2f855461624489dc6b https://www.encodeproject.org/files/ENCFF033GIZ/@@download/ENCFF033GIZ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF225EQY bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF040FFN, ENCFF127KUO 7241061 ENCODE Processing Pipeline a13201e6f9f9a88ae3150af208eea6db https://www.encodeproject.org/files/ENCFF225EQY/@@download/ENCFF225EQY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF317YDI bigBed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF228ORA 13112127 ENCODE Processing Pipeline 98bba2ab9abbcd241a1e0e4e64a5b82d https://www.encodeproject.org/files/ENCFF317YDI/@@download/ENCFF317YDI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF154ICY bigWig fold change over control ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF103HTZ, ENCFF864BUV, ENCFF874TOY 2542964874 ENCODE Processing Pipeline 1606c9114adccd04302ef2c0e283377e https://www.encodeproject.org/files/ENCFF154ICY/@@download/ENCFF154ICY.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF905NQR bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF864BUV, ENCFF874TOY 7316576 ENCODE Processing Pipeline 0c5980adb2664940d4da4140420602a5 https://www.encodeproject.org/files/ENCFF905NQR/@@download/ENCFF905NQR.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF386PEX bed narrowPeak conservative idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF331MJT, ENCFF419RSJ, ENCFF646YVH, ENCFF905NQR 79330 ENCODE Processing Pipeline e11b911b035ef368ed2d939aa3b6b14d https://www.encodeproject.org/files/ENCFF386PEX/@@download/ENCFF386PEX.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF417YVW bigWig signal p-value ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF864BUV, ENCFF874TOY 1135267365 ENCODE Processing Pipeline 1068d48bb2e4cdb36c2ffc37ab88c600 https://www.encodeproject.org/files/ENCFF417YVW/@@download/ENCFF417YVW.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF792QUV bigWig signal p-value ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF103HTZ, ENCFF874TOY 1184700932 ENCODE Processing Pipeline ae94fbe83437b57b4d11689761280a91 https://www.encodeproject.org/files/ENCFF792QUV/@@download/ENCFF792QUV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF426YOI bigWig signal p-value ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF103HTZ, ENCFF864BUV, ENCFF874TOY 1069103784 ENCODE Processing Pipeline 0f52c18c3fdd315037be52555eedfecf https://www.encodeproject.org/files/ENCFF426YOI/@@download/ENCFF426YOI.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF547RIB bigWig fold change over control ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF864BUV, ENCFF874TOY 1778027521 ENCODE Processing Pipeline 062f961c58061e23d6cce332de21a1b3 https://www.encodeproject.org/files/ENCFF547RIB/@@download/ENCFF547RIB.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF768FCF bigWig fold change over control ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF103HTZ, ENCFF874TOY 1800697212 ENCODE Processing Pipeline 90bd3bdee6138fb5c130a3e20c2d8436 https://www.encodeproject.org/files/ENCFF768FCF/@@download/ENCFF768FCF.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF537IFJ bigBed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF905NQR 13304754 ENCODE Processing Pipeline d1b7f55b7582b10b58c0c3c67e2a7f35 https://www.encodeproject.org/files/ENCFF537IFJ/@@download/ENCFF537IFJ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF105BGU bigBed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF646YVH 13257262 ENCODE Processing Pipeline cfadd39e52e7559421c302e0d781a01b https://www.encodeproject.org/files/ENCFF105BGU/@@download/ENCFF105BGU.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF157DJS bigBed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF331MJT 13132047 ENCODE Processing Pipeline dd69613973b2395365e09f30c0389517 https://www.encodeproject.org/files/ENCFF157DJS/@@download/ENCFF157DJS.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF533OBT bed narrowPeak optimal idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF331MJT, ENCFF419RSJ, ENCFF646YVH, ENCFF905NQR 91678 ENCODE Processing Pipeline 8a565b68c91fb99cf36e3acb754ad3aa https://www.encodeproject.org/files/ENCFF533OBT/@@download/ENCFF533OBT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF009GZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF533OBT 264440 ENCODE Processing Pipeline 146b595f5a8d9398137c2deb25cbfc7b https://www.encodeproject.org/files/ENCFF009GZQ/@@download/ENCFF009GZQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF899XBC bigBed narrowPeak conservative idr thresholded peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF386PEX 242219 ENCODE Processing Pipeline 80a9fb5656f23fba513dbebd21055a00 https://www.encodeproject.org/files/ENCFF899XBC/@@download/ENCFF899XBC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF331MJT bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1, 2 ENCFF103HTZ, ENCFF864BUV, ENCFF874TOY 7290175 ENCODE Processing Pipeline 954d46afd3cbc0739764473c2550cb60 https://www.encodeproject.org/files/ENCFF331MJT/@@download/ENCFF331MJT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF764SMY fastq reads ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2325644299 Richard Myers, HAIB 74123804a96c9667a629cae2793b2996 SRA:SRR5331296 https://www.encodeproject.org/files/ENCFF764SMY/@@download/ENCFF764SMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF660VHF fastq reads ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2073108759 Richard Myers, HAIB 9eb0a90422d74e635bf5d0ab6cf492af SRA:SRR5331297 https://www.encodeproject.org/files/ENCFF660VHF/@@download/ENCFF660VHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF071IQV bam unfiltered alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF660VHF 2424337818 ENCODE Processing Pipeline 5a462ade51c016bf3d136d55942f245a https://www.encodeproject.org/files/ENCFF071IQV/@@download/ENCFF071IQV.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF479YWT bam unfiltered alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF660VHF, ENCFF807MUK 2419775842 ENCODE Processing Pipeline ed6f2ab106126391ca8f927eac5bad8f https://www.encodeproject.org/files/ENCFF479YWT/@@download/ENCFF479YWT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF871LGL bam unfiltered alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF764SMY 2698080935 ENCODE Processing Pipeline c07c28b86e2bfc0a801ccc1cf040d780 https://www.encodeproject.org/files/ENCFF871LGL/@@download/ENCFF871LGL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF931HHY bam unfiltered alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF764SMY, ENCFF807MUK 2693002995 ENCODE Processing Pipeline de3b12a7a9006322803adb72b2f71fcd https://www.encodeproject.org/files/ENCFF931HHY/@@download/ENCFF931HHY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF913AGP bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF660VHF 1759548215 ENCODE Processing Pipeline 6c0ab69d17d8f1a5b1c0314236e40d1c https://www.encodeproject.org/files/ENCFF913AGP/@@download/ENCFF913AGP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894SSP bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF660VHF, ENCFF807MUK 1758647454 ENCODE Processing Pipeline 259adfd59c4f8cb78a75e133fa252df5 https://www.encodeproject.org/files/ENCFF894SSP/@@download/ENCFF894SSP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF177JUU bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF764SMY, ENCFF807MUK 1931799750 ENCODE Processing Pipeline 7fa85543e71c5dcd1f532546c1ed3b51 https://www.encodeproject.org/files/ENCFF177JUU/@@download/ENCFF177JUU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF065ROU bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF764SMY 1932780468 ENCODE Processing Pipeline 310e3b8c183103c2ca7fc7ffb40db2e5 https://www.encodeproject.org/files/ENCFF065ROU/@@download/ENCFF065ROU.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF824ZWB bigWig signal p-value ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF065ROU 617554376 ENCODE Processing Pipeline 43bcd1766f88d055eed6666fa39231e9 https://www.encodeproject.org/files/ENCFF824ZWB/@@download/ENCFF824ZWB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF548BGP bigWig signal p-value ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF065ROU, ENCFF913AGP 642501342 ENCODE Processing Pipeline a34f65a310187dc4ae73b3b5352fe27b https://www.encodeproject.org/files/ENCFF548BGP/@@download/ENCFF548BGP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF208QXB bigWig signal p-value ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF913AGP 561360808 ENCODE Processing Pipeline aa33879da7b748464b048851599891a8 https://www.encodeproject.org/files/ENCFF208QXB/@@download/ENCFF208QXB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF395GAJ bigWig fold change over control ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF065ROU 603649665 ENCODE Processing Pipeline bb37a988d7e47f3d02709b90f95fb088 https://www.encodeproject.org/files/ENCFF395GAJ/@@download/ENCFF395GAJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF893SJC bigWig fold change over control ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF913AGP 573775035 ENCODE Processing Pipeline 861e535b5ddcf7b1b34d1b27f3b9e86a https://www.encodeproject.org/files/ENCFF893SJC/@@download/ENCFF893SJC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF432XEL bigWig fold change over control ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF065ROU, ENCFF913AGP 987702898 ENCODE Processing Pipeline 35f0dfec7bd7aa3881186330236cb232 https://www.encodeproject.org/files/ENCFF432XEL/@@download/ENCFF432XEL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF920PJE bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF065ROU 6268770 ENCODE Processing Pipeline 0e861c8c9f8e02713ad336245f841474 https://www.encodeproject.org/files/ENCFF920PJE/@@download/ENCFF920PJE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF994ZVU bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF913AGP 6111129 ENCODE Processing Pipeline e2436aa9038948886ced913959c67df8 https://www.encodeproject.org/files/ENCFF994ZVU/@@download/ENCFF994ZVU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF849RKF bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF065ROU, ENCFF913AGP 6807716 ENCODE Processing Pipeline b56720236af3d648c1e1c0ca6f3e46dc https://www.encodeproject.org/files/ENCFF849RKF/@@download/ENCFF849RKF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF710NCK bigBed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF920PJE 13210294 ENCODE Processing Pipeline 6cecdbb348e258b7a9611d5cd6fd9490 https://www.encodeproject.org/files/ENCFF710NCK/@@download/ENCFF710NCK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF637NDN bigBed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF994ZVU 13201321 ENCODE Processing Pipeline f24e0e06d66c435ad2209db6e5b56469 https://www.encodeproject.org/files/ENCFF637NDN/@@download/ENCFF637NDN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF840ZDE bigBed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF849RKF 13122664 ENCODE Processing Pipeline 79fc49d8da50ac262a2f42c0bd18f9cd https://www.encodeproject.org/files/ENCFF840ZDE/@@download/ENCFF840ZDE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF736PPV bed narrowPeak optimal idr thresholded peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF849RKF, ENCFF920PJE, ENCFF994ZVU 456885 ENCODE Processing Pipeline b9496832205e5c0bec9c51e32b855e67 https://www.encodeproject.org/files/ENCFF736PPV/@@download/ENCFF736PPV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF606OVL bigBed narrowPeak optimal idr thresholded peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF736PPV 907086 ENCODE Processing Pipeline 1d9782f8c3a9336c0c0a74b22bbe05e3 https://www.encodeproject.org/files/ENCFF606OVL/@@download/ENCFF606OVL.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF504EHE bigWig signal p-value ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF177JUU, ENCFF203ABR 1265393267 ENCODE Processing Pipeline aef750b03a5726a4ed8971a95aeab15c https://www.encodeproject.org/files/ENCFF504EHE/@@download/ENCFF504EHE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF739KTB bigWig signal p-value ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF894SSP 1192284055 ENCODE Processing Pipeline 3d041876ca32471fb0542b96e5525264 https://www.encodeproject.org/files/ENCFF739KTB/@@download/ENCFF739KTB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF792AZY bigWig signal p-value ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF177JUU, ENCFF203ABR, ENCFF894SSP 1388691268 ENCODE Processing Pipeline 6965c8fe58b00265c2c718d04780a07f https://www.encodeproject.org/files/ENCFF792AZY/@@download/ENCFF792AZY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF334RUV bigWig fold change over control ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF177JUU, ENCFF203ABR 1048550631 ENCODE Processing Pipeline 1a90d720fe53c88573b207f9c3545b58 https://www.encodeproject.org/files/ENCFF334RUV/@@download/ENCFF334RUV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF294RDS bigWig fold change over control ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF894SSP 1001492274 ENCODE Processing Pipeline d13f71ec0b50758476c027ddae84279c https://www.encodeproject.org/files/ENCFF294RDS/@@download/ENCFF294RDS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF228JSX bigWig fold change over control ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF177JUU, ENCFF203ABR, ENCFF894SSP 1637556519 ENCODE Processing Pipeline 70600214c7d43d8ae6738b10ef863427 https://www.encodeproject.org/files/ENCFF228JSX/@@download/ENCFF228JSX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392WIW bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF177JUU, ENCFF203ABR 6731245 ENCODE Processing Pipeline d3de302c8bbffed33c919d7b767d4963 https://www.encodeproject.org/files/ENCFF392WIW/@@download/ENCFF392WIW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF704XPH bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF894SSP 6704513 ENCODE Processing Pipeline b208cee7af26546bde52a39ebdcbe2de https://www.encodeproject.org/files/ENCFF704XPH/@@download/ENCFF704XPH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF544RTZ bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF177JUU, ENCFF203ABR, ENCFF894SSP 7117715 ENCODE Processing Pipeline 5e7774164bf4e3341c5bc90ddb31c17b https://www.encodeproject.org/files/ENCFF544RTZ/@@download/ENCFF544RTZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304VNU bigBed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF704XPH 13202262 ENCODE Processing Pipeline 0697be5909f82f75b62550b4f0abc2c1 https://www.encodeproject.org/files/ENCFF304VNU/@@download/ENCFF304VNU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124JGV bigBed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF392WIW 13215081 ENCODE Processing Pipeline 7a549cd672faa2a0d1f81051bee7046e https://www.encodeproject.org/files/ENCFF124JGV/@@download/ENCFF124JGV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF129MRH bigBed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF544RTZ 13168526 ENCODE Processing Pipeline 46df94a2a1eda8bdbec2c2abc1ff03af https://www.encodeproject.org/files/ENCFF129MRH/@@download/ENCFF129MRH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF972IQJ bed narrowPeak optimal idr thresholded peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF392WIW, ENCFF544RTZ, ENCFF704XPH 438756 ENCODE Processing Pipeline 6146370743593070c24331cfe1551cf0 https://www.encodeproject.org/files/ENCFF972IQJ/@@download/ENCFF972IQJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF270YXD bigBed narrowPeak optimal idr thresholded peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF972IQJ 918508 ENCODE Processing Pipeline 1b85049fbb8af3824f9d0316574d484c https://www.encodeproject.org/files/ENCFF270YXD/@@download/ENCFF270YXD.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF465UXO bam unfiltered alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF168MKQ, ENCFF807MUK, ENCFF979UQU 1910002867 ENCODE Processing Pipeline a6263e563094e751198a24abe39e5801 https://www.encodeproject.org/files/ENCFF465UXO/@@download/ENCFF465UXO.bam hg19 released missing genetic modification characterization ENCFF251XRL bam unfiltered alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF501KRI, ENCFF807MUK, ENCFF858NEZ 1599894386 ENCODE Processing Pipeline 6650e19086466e2e87ca97153d4c9e49 https://www.encodeproject.org/files/ENCFF251XRL/@@download/ENCFF251XRL.bam hg19 released missing genetic modification characterization ENCFF979UQU fastq reads ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 935292585 Kevin White, UChicago be16f7471f14e8cb5786190a86c8b24d SRA:SRR6214115 https://www.encodeproject.org/files/ENCFF979UQU/@@download/ENCFF979UQU.fastq.gz Illumina HiSeq 2500 /files/ENCFF011LJK/, /files/ENCFF649MVC/ released missing genetic modification characterization ENCFF858NEZ fastq reads ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 608719259 Kevin White, UChicago 3137ed127d35502d3aaab90defbcf3db SRA:SRR6214117 https://www.encodeproject.org/files/ENCFF858NEZ/@@download/ENCFF858NEZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF011LJK/, /files/ENCFF649MVC/ released missing genetic modification characterization ENCFF501KRI fastq reads ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 847369902 Kevin White, UChicago 6c57bd7c413f8aa40ee5b4551e8f0edc SRA:SRR6214118 https://www.encodeproject.org/files/ENCFF501KRI/@@download/ENCFF501KRI.fastq.gz Illumina HiSeq 2000 /files/ENCFF011LJK/, /files/ENCFF649MVC/ released missing genetic modification characterization ENCFF168MKQ fastq reads ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 876538452 Kevin White, UChicago a06c5073578ce42a2e77b21e4149df54 SRA:SRR6214116 https://www.encodeproject.org/files/ENCFF168MKQ/@@download/ENCFF168MKQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF011LJK/, /files/ENCFF649MVC/ released missing genetic modification characterization ENCFF220WDD bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF501KRI, ENCFF807MUK, ENCFF858NEZ 1222834227 ENCODE Processing Pipeline 286da69d49aa9c58ee4ecce65b327d23 https://www.encodeproject.org/files/ENCFF220WDD/@@download/ENCFF220WDD.bam hg19 released missing genetic modification characterization ENCFF812HBY bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF168MKQ, ENCFF807MUK, ENCFF979UQU 1347825539 ENCODE Processing Pipeline a73f3af83f8e71a435db7011b7ce1ee8 https://www.encodeproject.org/files/ENCFF812HBY/@@download/ENCFF812HBY.bam hg19 released missing genetic modification characterization ENCFF503LJQ bigWig signal p-value ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF220WDD, ENCFF736LGI 606282444 ENCODE Processing Pipeline 69fa211c453630993c0644101404ced1 https://www.encodeproject.org/files/ENCFF503LJQ/@@download/ENCFF503LJQ.bigWig hg19 released missing genetic modification characterization ENCFF077KEO bigWig signal p-value ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF736LGI, ENCFF812HBY 748193186 ENCODE Processing Pipeline 9177e66c4249aeff7420ce34ac3ef686 https://www.encodeproject.org/files/ENCFF077KEO/@@download/ENCFF077KEO.bigWig hg19 released missing genetic modification characterization ENCFF894ERT bigWig signal p-value ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF220WDD, ENCFF736LGI, ENCFF812HBY 834901180 ENCODE Processing Pipeline 78551340ae68a3b22c6f9fe3ae93b642 https://www.encodeproject.org/files/ENCFF894ERT/@@download/ENCFF894ERT.bigWig hg19 released missing genetic modification characterization ENCFF782OOT bigWig fold change over control ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF736LGI, ENCFF812HBY 675756939 ENCODE Processing Pipeline c36038fb2dd4cb5f9d9fde1ba7ffc66e https://www.encodeproject.org/files/ENCFF782OOT/@@download/ENCFF782OOT.bigWig hg19 released missing genetic modification characterization ENCFF773RCF bigWig fold change over control ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF220WDD, ENCFF736LGI 643573675 ENCODE Processing Pipeline 19d3d848cc939b9ec908e7cbc2786031 https://www.encodeproject.org/files/ENCFF773RCF/@@download/ENCFF773RCF.bigWig hg19 released missing genetic modification characterization ENCFF968KJF bigWig fold change over control ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF220WDD, ENCFF736LGI, ENCFF812HBY 1018743107 ENCODE Processing Pipeline 14ef80e81cc65b453027ac47a2821490 https://www.encodeproject.org/files/ENCFF968KJF/@@download/ENCFF968KJF.bigWig hg19 released missing genetic modification characterization ENCFF772XDS bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF220WDD, ENCFF736LGI 6670751 ENCODE Processing Pipeline b7b315993188bf1abc678d70b38144eb https://www.encodeproject.org/files/ENCFF772XDS/@@download/ENCFF772XDS.bed.gz hg19 released missing genetic modification characterization ENCFF906RNM bigBed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF469YOH 12673351 ENCODE Processing Pipeline 1d988e76f8bdf51ac312c4fa6346d097 https://www.encodeproject.org/files/ENCFF906RNM/@@download/ENCFF906RNM.bigBed hg19 released missing genetic modification characterization ENCFF244WXE bigBed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF772XDS 12968181 ENCODE Processing Pipeline 48fe2288102ac2fa8f07557718a90bf6 https://www.encodeproject.org/files/ENCFF244WXE/@@download/ENCFF244WXE.bigBed hg19 released missing genetic modification characterization ENCFF469YOH bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF736LGI, ENCFF812HBY 7059386 ENCODE Processing Pipeline f50f1f3780c9198b3c3454752863a295 https://www.encodeproject.org/files/ENCFF469YOH/@@download/ENCFF469YOH.bed.gz hg19 released missing genetic modification characterization ENCFF820FCA bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF220WDD, ENCFF736LGI, ENCFF812HBY 7235484 ENCODE Processing Pipeline b9c2f1c3f5bbf0b61f08bfc1745bb904 https://www.encodeproject.org/files/ENCFF820FCA/@@download/ENCFF820FCA.bed.gz hg19 released missing genetic modification characterization ENCFF161ERU bigBed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF820FCA 12709129 ENCODE Processing Pipeline be77fbdd16854eaa89ad0816ecf5b3bb https://www.encodeproject.org/files/ENCFF161ERU/@@download/ENCFF161ERU.bigBed hg19 released missing genetic modification characterization ENCFF616RIU bam unfiltered alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF501KRI, ENCFF643CGH, ENCFF858NEZ 1605320400 ENCODE Processing Pipeline 5bb2f42145cb4618bac38e9f584ff4f9 https://www.encodeproject.org/files/ENCFF616RIU/@@download/ENCFF616RIU.bam GRCh38 released missing genetic modification characterization ENCFF221XVM bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF501KRI, ENCFF643CGH, ENCFF858NEZ 1222236089 ENCODE Processing Pipeline 54165fe6de76ff77d1fb05229ef05689 https://www.encodeproject.org/files/ENCFF221XVM/@@download/ENCFF221XVM.bam GRCh38 released missing genetic modification characterization ENCFF407GKR bam unfiltered alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF168MKQ, ENCFF643CGH, ENCFF979UQU 1916613030 ENCODE Processing Pipeline 4dba033202c62daf9345ee41aa80f170 https://www.encodeproject.org/files/ENCFF407GKR/@@download/ENCFF407GKR.bam GRCh38 released missing genetic modification characterization ENCFF042SJF bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF168MKQ, ENCFF643CGH, ENCFF979UQU 1347079217 ENCODE Processing Pipeline 07b7ae8194db80c1071b83af6ef7721d https://www.encodeproject.org/files/ENCFF042SJF/@@download/ENCFF042SJF.bam GRCh38 released missing genetic modification characterization ENCFF837ASO bigWig signal p-value ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF042SJF, ENCFF274BOZ 692760224 ENCODE Processing Pipeline 6dfe351489d15e88be98d98a77722299 https://www.encodeproject.org/files/ENCFF837ASO/@@download/ENCFF837ASO.bigWig GRCh38 released missing genetic modification characterization ENCFF594WFX bigWig signal p-value ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF221XVM, ENCFF274BOZ 533848939 ENCODE Processing Pipeline 8f7cbb299f0c4593b6e4925ef5b066a1 https://www.encodeproject.org/files/ENCFF594WFX/@@download/ENCFF594WFX.bigWig GRCh38 released missing genetic modification characterization ENCFF701KHH bigWig fold change over control ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF042SJF, ENCFF274BOZ 684312782 ENCODE Processing Pipeline bbb58c20fdd2c4869a21f0eebbc96a12 https://www.encodeproject.org/files/ENCFF701KHH/@@download/ENCFF701KHH.bigWig GRCh38 released missing genetic modification characterization ENCFF513SZH bigWig signal p-value ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF042SJF, ENCFF221XVM, ENCFF274BOZ 830167805 ENCODE Processing Pipeline ce0941dc9fa649985b0ae1a9e3cfe669 https://www.encodeproject.org/files/ENCFF513SZH/@@download/ENCFF513SZH.bigWig GRCh38 released missing genetic modification characterization ENCFF332DKR bigWig fold change over control ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF221XVM, ENCFF274BOZ 620790645 ENCODE Processing Pipeline dc01a7bd47ab0eec160e08b3265693d0 https://www.encodeproject.org/files/ENCFF332DKR/@@download/ENCFF332DKR.bigWig GRCh38 released missing genetic modification characterization ENCFF245AYE bigWig fold change over control ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF042SJF, ENCFF221XVM, ENCFF274BOZ 1012194859 ENCODE Processing Pipeline 1e80c9746ea7579caa6d0de51379fe36 https://www.encodeproject.org/files/ENCFF245AYE/@@download/ENCFF245AYE.bigWig GRCh38 released missing genetic modification characterization ENCFF356MDE bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF221XVM, ENCFF274BOZ 6495494 ENCODE Processing Pipeline 62ecdfedf414fcc71f91a2d32fd24d50 https://www.encodeproject.org/files/ENCFF356MDE/@@download/ENCFF356MDE.bed.gz GRCh38 released missing genetic modification characterization ENCFF669IOJ bigBed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF356MDE 12979674 ENCODE Processing Pipeline e2fb6f453ace0b875d26a301820ffe43 https://www.encodeproject.org/files/ENCFF669IOJ/@@download/ENCFF669IOJ.bigBed GRCh38 released missing genetic modification characterization ENCFF443POG bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF042SJF, ENCFF221XVM, ENCFF274BOZ 7172438 ENCODE Processing Pipeline 19fc6c3b735fb09b051f9e053458a806 https://www.encodeproject.org/files/ENCFF443POG/@@download/ENCFF443POG.bed.gz GRCh38 released missing genetic modification characterization ENCFF795UBE bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF042SJF, ENCFF274BOZ 6964069 ENCODE Processing Pipeline 0cf18f474a866ebeabed10e75457c7aa https://www.encodeproject.org/files/ENCFF795UBE/@@download/ENCFF795UBE.bed.gz GRCh38 released missing genetic modification characterization ENCFF199FBA bigBed narrowPeak conservative idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF752RBV 587629 ENCODE Processing Pipeline 1298f58579f540ddc42da8f555d29ede https://www.encodeproject.org/files/ENCFF199FBA/@@download/ENCFF199FBA.bigBed GRCh38 released missing genetic modification characterization ENCFF752RBV bed narrowPeak conservative idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF356MDE, ENCFF419RSJ, ENCFF443POG, ENCFF795UBE 234782 ENCODE Processing Pipeline c187c9c6b62752e9ebf7303126535376 https://www.encodeproject.org/files/ENCFF752RBV/@@download/ENCFF752RBV.bed.gz GRCh38 released missing genetic modification characterization ENCFF365WQR bed narrowPeak optimal idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF356MDE, ENCFF419RSJ, ENCFF443POG, ENCFF795UBE 308624 ENCODE Processing Pipeline 7f044fedfd3ee72ba2de5399f6421de2 https://www.encodeproject.org/files/ENCFF365WQR/@@download/ENCFF365WQR.bed.gz GRCh38 released missing genetic modification characterization ENCFF135DVR bigBed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF795UBE 12677425 ENCODE Processing Pipeline c2dfb520a8c46ffa375983ce4d15172f https://www.encodeproject.org/files/ENCFF135DVR/@@download/ENCFF135DVR.bigBed GRCh38 released missing genetic modification characterization ENCFF229NAA bigBed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF443POG 12733941 ENCODE Processing Pipeline 2b8cace252d04f0eb575888e9e5cdb71 https://www.encodeproject.org/files/ENCFF229NAA/@@download/ENCFF229NAA.bigBed GRCh38 released missing genetic modification characterization ENCFF590IXA bigBed narrowPeak optimal idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF365WQR 724700 ENCODE Processing Pipeline fa282cf209fe43a045aaa97035c8a487 https://www.encodeproject.org/files/ENCFF590IXA/@@download/ENCFF590IXA.bigBed GRCh38 released missing genetic modification characterization ENCFF319BCP bed narrowPeak optimal idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF469YOH, ENCFF772XDS, ENCFF820FCA 249611 ENCODE Processing Pipeline 1a3945bf43921b404e8afa5fea99ca48 https://www.encodeproject.org/files/ENCFF319BCP/@@download/ENCFF319BCP.bed.gz hg19 released missing genetic modification characterization ENCFF606FPF bigBed narrowPeak optimal idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF319BCP 523861 ENCODE Processing Pipeline adaf8e3add04ed935a7d1c6ff41a4155 https://www.encodeproject.org/files/ENCFF606FPF/@@download/ENCFF606FPF.bigBed hg19 released missing genetic modification characterization ENCFF772AZG bigBed narrowPeak conservative idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF476YGX 433876 ENCODE Processing Pipeline 1604267f6502872063500d9eda9eb453 https://www.encodeproject.org/files/ENCFF772AZG/@@download/ENCFF772AZG.bigBed hg19 released missing genetic modification characterization ENCFF476YGX bed narrowPeak conservative idr thresholded peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF469YOH, ENCFF772XDS, ENCFF820FCA 190668 ENCODE Processing Pipeline 10cf300bc70b86079fd310bbd0d61d6b https://www.encodeproject.org/files/ENCFF476YGX/@@download/ENCFF476YGX.bed.gz hg19 released missing genetic modification characterization ENCFF453JCJ fastq reads ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 998936310 Xiang-Dong Fu, UCSD 00610c595947ac92ed460b76c4a251e1 SRA:SRR6214016 https://www.encodeproject.org/files/ENCFF453JCJ/@@download/ENCFF453JCJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF092DDZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF150BYW fastq reads ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 841825318 Xiang-Dong Fu, UCSD f5bd16a926a83c8869632b7099a58a3d SRA:SRR6214017 https://www.encodeproject.org/files/ENCFF150BYW/@@download/ENCFF150BYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF510UAH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF192IAK bam unfiltered alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF150BYW, ENCFF807MUK 913628695 ENCODE Processing Pipeline e43045dfa5468e7d58c07e84733c0122 https://www.encodeproject.org/files/ENCFF192IAK/@@download/ENCFF192IAK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF938LDN bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF150BYW, ENCFF807MUK 441518031 ENCODE Processing Pipeline 3a1226ff89ef3b357bcf1fca50d503bf https://www.encodeproject.org/files/ENCFF938LDN/@@download/ENCFF938LDN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF161VHM bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF150BYW, ENCFF643CGH 440831033 ENCODE Processing Pipeline e38139e11bcec72e29c8df8f4d43f429 https://www.encodeproject.org/files/ENCFF161VHM/@@download/ENCFF161VHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF425VIX bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF453JCJ, ENCFF807MUK 500780765 ENCODE Processing Pipeline df56c2786639b77d9c1414945c8d794b https://www.encodeproject.org/files/ENCFF425VIX/@@download/ENCFF425VIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF247OHX bam unfiltered alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF453JCJ, ENCFF643CGH 1072038300 ENCODE Processing Pipeline 0e8cb37db36f099b7c0dbf961f83145e https://www.encodeproject.org/files/ENCFF247OHX/@@download/ENCFF247OHX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF156OFZ bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF453JCJ, ENCFF643CGH 500002236 ENCODE Processing Pipeline 063219ec05cabe6e16a9716e0871010c https://www.encodeproject.org/files/ENCFF156OFZ/@@download/ENCFF156OFZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF520WLS bam unfiltered alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF150BYW, ENCFF643CGH 913790128 ENCODE Processing Pipeline 85d3b2612785ce28187e8a5f8bb48e6a https://www.encodeproject.org/files/ENCFF520WLS/@@download/ENCFF520WLS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF570RKI bam unfiltered alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF453JCJ, ENCFF807MUK 1071874374 ENCODE Processing Pipeline 861eac3c9aeacffd9b7c88984d069db8 https://www.encodeproject.org/files/ENCFF570RKI/@@download/ENCFF570RKI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF189IDV bigWig fold change over control ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF938LDN 264239776 ENCODE Processing Pipeline 09b632c3b684dacd7bd200cfa0d7b752 https://www.encodeproject.org/files/ENCFF189IDV/@@download/ENCFF189IDV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF155BGN bigWig signal p-value ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF938LDN 474473769 ENCODE Processing Pipeline 791f9b1f70f013ad609a49c40a5a529b https://www.encodeproject.org/files/ENCFF155BGN/@@download/ENCFF155BGN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF938QBJ bigWig signal p-value ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF425VIX, ENCFF572OMD 466422790 ENCODE Processing Pipeline 7a4ef83f193591700d998a5f277739e5 https://www.encodeproject.org/files/ENCFF938QBJ/@@download/ENCFF938QBJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF443CVW bigWig signal p-value ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF425VIX, ENCFF508DBG, ENCFF572OMD, ENCFF938LDN 818121284 ENCODE Processing Pipeline 025a314b9d5b89a5542ea035c86573ac https://www.encodeproject.org/files/ENCFF443CVW/@@download/ENCFF443CVW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF979NUD bigWig fold change over control ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF425VIX, ENCFF572OMD 280975252 ENCODE Processing Pipeline a047bc66c45332caf67280782aae5eee https://www.encodeproject.org/files/ENCFF979NUD/@@download/ENCFF979NUD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF600MKI bigWig fold change over control ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF425VIX, ENCFF508DBG, ENCFF572OMD, ENCFF938LDN 587181655 ENCODE Processing Pipeline 089895170be62efd853ef7fd1e344769 https://www.encodeproject.org/files/ENCFF600MKI/@@download/ENCFF600MKI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF470QLV bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF938LDN 6177835 ENCODE Processing Pipeline 9736c4051e5dd11f89ca06ed8d8caf4f https://www.encodeproject.org/files/ENCFF470QLV/@@download/ENCFF470QLV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF309FGP bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF425VIX, ENCFF572OMD 6445090 ENCODE Processing Pipeline 644311b48adc7dac81b450b4c99dcd2a https://www.encodeproject.org/files/ENCFF309FGP/@@download/ENCFF309FGP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF027DFU bigBed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF470QLV 11210309 ENCODE Processing Pipeline bd5428eec8cf479f7d3bdc96ce37d9c9 https://www.encodeproject.org/files/ENCFF027DFU/@@download/ENCFF027DFU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF590JZV bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF425VIX, ENCFF508DBG, ENCFF572OMD, ENCFF938LDN 6884691 ENCODE Processing Pipeline abfba4d54cd4c4594f984e6b7e6faa60 https://www.encodeproject.org/files/ENCFF590JZV/@@download/ENCFF590JZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF028KSH bigBed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF309FGP 11641887 ENCODE Processing Pipeline 5048c16837b4e8fe75c3aa0424443c44 https://www.encodeproject.org/files/ENCFF028KSH/@@download/ENCFF028KSH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF677XMK bigBed narrowPeak conservative idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF140GXH 1854745 ENCODE Processing Pipeline 2ecc42fff66f6fc0fb11ea47376a74e8 https://www.encodeproject.org/files/ENCFF677XMK/@@download/ENCFF677XMK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF120IDE bed narrowPeak optimal idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF309FGP, ENCFF470QLV, ENCFF590JZV 998359 ENCODE Processing Pipeline 4362859aa12a3ba4328a7931a50d40a3 https://www.encodeproject.org/files/ENCFF120IDE/@@download/ENCFF120IDE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF758FDS bigBed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF590JZV 11366294 ENCODE Processing Pipeline 891b8cb7f6b2c7e29542d51010a4afbf https://www.encodeproject.org/files/ENCFF758FDS/@@download/ENCFF758FDS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF140GXH bed narrowPeak conservative idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF309FGP, ENCFF470QLV, ENCFF590JZV 965464 ENCODE Processing Pipeline 82ae211d0d3c247200976490a490027a https://www.encodeproject.org/files/ENCFF140GXH/@@download/ENCFF140GXH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF450WHV bigBed narrowPeak optimal idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF120IDE 1909271 ENCODE Processing Pipeline 1e22ddfacc4e4647d270d385ea9c1690 https://www.encodeproject.org/files/ENCFF450WHV/@@download/ENCFF450WHV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF384XHS bigWig signal p-value ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF156OFZ 452783057 ENCODE Processing Pipeline 9fc67fef57df5a55ad839a0054ffccc5 https://www.encodeproject.org/files/ENCFF384XHS/@@download/ENCFF384XHS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF985IJP bigWig fold change over control ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF161VHM, ENCFF721LZU 263175625 ENCODE Processing Pipeline a84e75e55cbb66028d3372ded7189532 https://www.encodeproject.org/files/ENCFF985IJP/@@download/ENCFF985IJP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF294HYU bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF161VHM, ENCFF721LZU 6172518 ENCODE Processing Pipeline bc5ae1fb5a55e00078598f6e4d790e9e https://www.encodeproject.org/files/ENCFF294HYU/@@download/ENCFF294HYU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF825HZH bigBed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF294HYU 11206142 ENCODE Processing Pipeline 832a8b436af0d93c725ce4492b7e959c https://www.encodeproject.org/files/ENCFF825HZH/@@download/ENCFF825HZH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF834PRZ bed narrowPeak conservative idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF102HGA, ENCFF294HYU, ENCFF314GFC, ENCFF419RSJ 971020 ENCODE Processing Pipeline 5eb30b5a4c1736d1a07a9d3d7415f6f5 https://www.encodeproject.org/files/ENCFF834PRZ/@@download/ENCFF834PRZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF908TUZ bigWig signal p-value ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF161VHM, ENCFF721LZU 518492681 ENCODE Processing Pipeline dde393398c7a5518918f11447e187fb8 https://www.encodeproject.org/files/ENCFF908TUZ/@@download/ENCFF908TUZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF782SMH bigBed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF102HGA 11534695 ENCODE Processing Pipeline c18a4b55fd4f6baf9a4532038d544895 https://www.encodeproject.org/files/ENCFF782SMH/@@download/ENCFF782SMH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF206PDH bigWig signal p-value ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF156OFZ, ENCFF161VHM, ENCFF721LZU 874326249 ENCODE Processing Pipeline 8b8c6a53dcff014faf0cd2d6578873b7 https://www.encodeproject.org/files/ENCFF206PDH/@@download/ENCFF206PDH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF240ELJ bigWig fold change over control ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF156OFZ 283198280 ENCODE Processing Pipeline 3dc8aea4f9922416536f7410e7713974 https://www.encodeproject.org/files/ENCFF240ELJ/@@download/ENCFF240ELJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF051NQJ bigWig fold change over control ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF156OFZ, ENCFF161VHM, ENCFF721LZU 595207880 ENCODE Processing Pipeline 8f4b19390502bdfd1631327b60373144 https://www.encodeproject.org/files/ENCFF051NQJ/@@download/ENCFF051NQJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF102HGA bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF156OFZ, ENCFF161VHM, ENCFF721LZU 7008952 ENCODE Processing Pipeline 930e93467373cc9939e425924319e43c https://www.encodeproject.org/files/ENCFF102HGA/@@download/ENCFF102HGA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF196WTG bigBed narrowPeak optimal idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF232ASB 1933103 ENCODE Processing Pipeline 0e51c4d520b2cc4aff66f03f05be370e https://www.encodeproject.org/files/ENCFF196WTG/@@download/ENCFF196WTG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF793LSM bigBed narrowPeak conservative idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF834PRZ 1871631 ENCODE Processing Pipeline 5b81f185c54439508ba1e3a0e643546a https://www.encodeproject.org/files/ENCFF793LSM/@@download/ENCFF793LSM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF232ASB bed narrowPeak optimal idr thresholded peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF102HGA, ENCFF294HYU, ENCFF314GFC, ENCFF419RSJ 1008580 ENCODE Processing Pipeline 6fb75ec10500be4f9a09c1ff700835b7 https://www.encodeproject.org/files/ENCFF232ASB/@@download/ENCFF232ASB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF314GFC bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF156OFZ 6433897 ENCODE Processing Pipeline 61b8884f72c94af212cc5f4b25c81422 https://www.encodeproject.org/files/ENCFF314GFC/@@download/ENCFF314GFC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF806OQG bigBed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF314GFC 11633098 ENCODE Processing Pipeline 4e34f3b4abb90a580c2b746882fcc612 https://www.encodeproject.org/files/ENCFF806OQG/@@download/ENCFF806OQG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF953YJK fastq reads ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF445QCX 4016137356 Richard Myers, HAIB 69f91e84a704486fae8b7119156f3838 SRA:SRR6214000 https://www.encodeproject.org/files/ENCFF953YJK/@@download/ENCFF953YJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF657PTT/ released antibody characterized with exemption missing control alignments ENCFF445QCX fastq reads ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF953YJK 4088303408 Richard Myers, HAIB 7122cba335127231beb871bce9a25f20 SRA:SRR6214000 https://www.encodeproject.org/files/ENCFF445QCX/@@download/ENCFF445QCX.fastq.gz Illumina HiSeq 2000 /files/ENCFF946FRP/ released antibody characterized with exemption missing control alignments ENCFF422LKG bam unfiltered alignments ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF445QCX, ENCFF807MUK, ENCFF953YJK 9249815945 ENCODE Processing Pipeline fa533a38ee4c198d850cd03c236dd92c https://www.encodeproject.org/files/ENCFF422LKG/@@download/ENCFF422LKG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF446NOX bam alignments ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF445QCX, ENCFF807MUK, ENCFF953YJK 6725034747 ENCODE Processing Pipeline 41c3fd7bf2955767c07b9c4e0b04f6e7 https://www.encodeproject.org/files/ENCFF446NOX/@@download/ENCFF446NOX.bam hg19 released antibody characterized with exemption missing control alignments ENCFF322UWF bam unfiltered alignments ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF445QCX, ENCFF643CGH, ENCFF953YJK 9286318138 ENCODE Processing Pipeline 0994000eb905745cef8c10971aa250a8 https://www.encodeproject.org/files/ENCFF322UWF/@@download/ENCFF322UWF.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF648SHM bam alignments ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF445QCX, ENCFF643CGH, ENCFF953YJK 6734618764 ENCODE Processing Pipeline ff63e32ec2b067013c9203066c9a0383 https://www.encodeproject.org/files/ENCFF648SHM/@@download/ENCFF648SHM.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF917PXT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF495TAN 117000 ENCODE Processing Pipeline 16503dbb6eda058c5d5183d9a1fc49a2 https://www.encodeproject.org/files/ENCFF917PXT/@@download/ENCFF917PXT.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF304NJW bigBed narrowPeak peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF495TAN 11774747 ENCODE Processing Pipeline 101ae771fc82d0ede788c9d6e972f37e https://www.encodeproject.org/files/ENCFF304NJW/@@download/ENCFF304NJW.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF435NTN bigWig fold change over control ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF446NOX 2067041030 ENCODE Processing Pipeline e32df7459368cb2a0087f0a4d53b76d3 https://www.encodeproject.org/files/ENCFF435NTN/@@download/ENCFF435NTN.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF395UFY bigWig signal p-value ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF446NOX 1868606352 ENCODE Processing Pipeline 9de26a2f2555b4d428be7b6fe6dd438e https://www.encodeproject.org/files/ENCFF395UFY/@@download/ENCFF395UFY.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF495TAN bed narrowPeak peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF446NOX 6487954 ENCODE Processing Pipeline 423ecba64b2025257934b472c14c76ad https://www.encodeproject.org/files/ENCFF495TAN/@@download/ENCFF495TAN.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF977YLN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF917PXT 287241 ENCODE Processing Pipeline 40906811350c60af9218e7bcbdc0ef72 https://www.encodeproject.org/files/ENCFF977YLN/@@download/ENCFF977YLN.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF817GCF bigBed narrowPeak peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF698UIT 11795338 ENCODE Processing Pipeline 2bfaba8d9c5c52a40a92d384e76640a5 https://www.encodeproject.org/files/ENCFF817GCF/@@download/ENCFF817GCF.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF939ASQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF616YFR 289100 ENCODE Processing Pipeline 778e041373610af567c193dddf2ea6fb https://www.encodeproject.org/files/ENCFF939ASQ/@@download/ENCFF939ASQ.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF804PLK bigWig signal p-value ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF648SHM 1871380104 ENCODE Processing Pipeline 294701a3732191de14bd2e89241bb573 https://www.encodeproject.org/files/ENCFF804PLK/@@download/ENCFF804PLK.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF902HKG bigWig fold change over control ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF648SHM 2079834187 ENCODE Processing Pipeline b3fe2f0f6893e38734695aa52b6a1662 https://www.encodeproject.org/files/ENCFF902HKG/@@download/ENCFF902HKG.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF698UIT bed narrowPeak peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF648SHM 6493420 ENCODE Processing Pipeline 4e9ba6af3763fdecb31128810d29a183 https://www.encodeproject.org/files/ENCFF698UIT/@@download/ENCFF698UIT.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF616YFR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF698UIT 117093 ENCODE Processing Pipeline 4c0a8b33c9cc7979ce8faee1b291899d https://www.encodeproject.org/files/ENCFF616YFR/@@download/ENCFF616YFR.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF251IZE fastq reads ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF871SZT 1971100240 Richard Myers, HAIB ff04516575b3d3cac4c7d35e061fca68 https://www.encodeproject.org/files/ENCFF251IZE/@@download/ENCFF251IZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF094LCI/ released antibody characterized with exemption experiment not submitted to GEO ENCFF871SZT fastq reads ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF251IZE 2058173566 Richard Myers, HAIB d89843bbcd970dda7ab75acc49bc7dcb https://www.encodeproject.org/files/ENCFF871SZT/@@download/ENCFF871SZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF818HXE/ released antibody characterized with exemption experiment not submitted to GEO ENCFF647VFH bam unfiltered alignments ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF251IZE, ENCFF807MUK, ENCFF871SZT 4788066289 ENCODE Processing Pipeline 50dcd80212d1ea8866b87c8238b7146c https://www.encodeproject.org/files/ENCFF647VFH/@@download/ENCFF647VFH.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF796XBF bam alignments ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF251IZE, ENCFF807MUK, ENCFF871SZT 3662952050 ENCODE Processing Pipeline df5b88debd6310033627adb6358c5a2f https://www.encodeproject.org/files/ENCFF796XBF/@@download/ENCFF796XBF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF403YCP bam unfiltered alignments ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF251IZE, ENCFF643CGH, ENCFF871SZT 4803542439 ENCODE Processing Pipeline ccc81652826733f5eaec99c2278654a7 https://www.encodeproject.org/files/ENCFF403YCP/@@download/ENCFF403YCP.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF987NCX bam alignments ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF251IZE, ENCFF643CGH, ENCFF871SZT 3663011387 ENCODE Processing Pipeline 120812ebeccba388e9db2d52c5359f62 https://www.encodeproject.org/files/ENCFF987NCX/@@download/ENCFF987NCX.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF826KLY bigWig signal p-value ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF729OTP, ENCFF987NCX 1258946250 ENCODE Processing Pipeline 432bf21c371882baf2b8686d25297247 https://www.encodeproject.org/files/ENCFF826KLY/@@download/ENCFF826KLY.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF762LFD bed narrowPeak peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF729OTP, ENCFF987NCX 7114916 ENCODE Processing Pipeline 3ff66fc1c7bb7d4ecae990e56f22564f https://www.encodeproject.org/files/ENCFF762LFD/@@download/ENCFF762LFD.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF136VFB bigWig signal p-value ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF468VJA, ENCFF796XBF 1172259971 ENCODE Processing Pipeline 25dcd2420be043be47c50a689f83413e https://www.encodeproject.org/files/ENCFF136VFB/@@download/ENCFF136VFB.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF241OEC bigBed narrowPeak peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF762LFD 13179572 ENCODE Processing Pipeline b6419a281b19f4703993c7046e1be535 https://www.encodeproject.org/files/ENCFF241OEC/@@download/ENCFF241OEC.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF833ABG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF776AUH 1207651 ENCODE Processing Pipeline 8d163aabc162ede90d7463eb87aa3a05 https://www.encodeproject.org/files/ENCFF833ABG/@@download/ENCFF833ABG.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF844DMB bigWig fold change over control ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF468VJA, ENCFF796XBF 1220504433 ENCODE Processing Pipeline ff64e9f0ff7b07c899d466f9dd68de4e https://www.encodeproject.org/files/ENCFF844DMB/@@download/ENCFF844DMB.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF643JAF bigWig fold change over control ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF729OTP, ENCFF987NCX 1220226526 ENCODE Processing Pipeline fca1c626c0b0487476fa9d5d413a9506 https://www.encodeproject.org/files/ENCFF643JAF/@@download/ENCFF643JAF.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF776AUH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF762LFD 615349 ENCODE Processing Pipeline c392b9da87b1a2f751ea0c0d2aa4b0c3 https://www.encodeproject.org/files/ENCFF776AUH/@@download/ENCFF776AUH.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF946CXU bed narrowPeak peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF468VJA, ENCFF796XBF 7054765 ENCODE Processing Pipeline 3ccc70b6aafcb62b9d5bef44f8907ddd https://www.encodeproject.org/files/ENCFF946CXU/@@download/ENCFF946CXU.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF580CNK bigBed narrowPeak peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF946CXU 13117743 ENCODE Processing Pipeline 1d9226a84e9012720a915c8a96920393 https://www.encodeproject.org/files/ENCFF580CNK/@@download/ENCFF580CNK.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF770MEC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF427HSH 1197124 ENCODE Processing Pipeline 7116167e0f29fc596bd534d99256f2aa https://www.encodeproject.org/files/ENCFF770MEC/@@download/ENCFF770MEC.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF427HSH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF946CXU 607459 ENCODE Processing Pipeline c0cf8bf3251de2af940916be579b66bf https://www.encodeproject.org/files/ENCFF427HSH/@@download/ENCFF427HSH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF962ZIJ fastq reads ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1826860821 Richard Myers, HAIB bc5520af7e8f716dbc0e4407cb6fd9dd SRA:SRR5331280 https://www.encodeproject.org/files/ENCFF962ZIJ/@@download/ENCFF962ZIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF919DQH fastq reads ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2120849159 Richard Myers, HAIB 971189d49c74cdf3e62df683df11fabe SRA:SRR5331279 https://www.encodeproject.org/files/ENCFF919DQH/@@download/ENCFF919DQH.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF372GAL bam unfiltered alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF962ZIJ 2126533781 ENCODE Processing Pipeline 0a9319eab7531a8b9b7b8b77f594efae https://www.encodeproject.org/files/ENCFF372GAL/@@download/ENCFF372GAL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517HYD bam unfiltered alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF962ZIJ 2121449131 ENCODE Processing Pipeline f5b668578c638e8d38098d2bfd367ada https://www.encodeproject.org/files/ENCFF517HYD/@@download/ENCFF517HYD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF973CTS bam unfiltered alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF919DQH 2446866382 ENCODE Processing Pipeline 35396dc982282cca11173fa136db8310 https://www.encodeproject.org/files/ENCFF973CTS/@@download/ENCFF973CTS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF068QMM bam unfiltered alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF919DQH 2441385187 ENCODE Processing Pipeline ec16e02ce72ee174aca1dd5cf83d0473 https://www.encodeproject.org/files/ENCFF068QMM/@@download/ENCFF068QMM.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF294QEI bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF962ZIJ 1662108240 ENCODE Processing Pipeline d5b501719a61ccb2372efb70fa252286 https://www.encodeproject.org/files/ENCFF294QEI/@@download/ENCFF294QEI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF176VLC bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF962ZIJ 1661033766 ENCODE Processing Pipeline 67bdc2f43669d69915f7f94e9cbd0833 https://www.encodeproject.org/files/ENCFF176VLC/@@download/ENCFF176VLC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF446MDK bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF919DQH 1837755848 ENCODE Processing Pipeline d2b4eed1f9ce8120089fc20590050114 https://www.encodeproject.org/files/ENCFF446MDK/@@download/ENCFF446MDK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF020TIU bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF919DQH 1836522205 ENCODE Processing Pipeline 3e9fba1ce65b9c50ebe1afede11f4e6e https://www.encodeproject.org/files/ENCFF020TIU/@@download/ENCFF020TIU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF044RBC bigWig signal p-value ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF446MDK 657704103 ENCODE Processing Pipeline 3e47e092d6ae9a16b31d2053c4ae1c20 https://www.encodeproject.org/files/ENCFF044RBC/@@download/ENCFF044RBC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF270HQG bigWig signal p-value ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF294QEI 616247973 ENCODE Processing Pipeline b5bb5c1ef4e4629e6fa36e723a23a344 https://www.encodeproject.org/files/ENCFF270HQG/@@download/ENCFF270HQG.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308GZT bigWig signal p-value ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF294QEI, ENCFF446MDK 648439887 ENCODE Processing Pipeline ad25663c53e4fc13ebb9b52703b78525 https://www.encodeproject.org/files/ENCFF308GZT/@@download/ENCFF308GZT.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF368WYF bigWig fold change over control ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF446MDK 644435466 ENCODE Processing Pipeline c3df6373ba1b917fe510ca94531f5667 https://www.encodeproject.org/files/ENCFF368WYF/@@download/ENCFF368WYF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF211CPA bigWig fold change over control ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF294QEI 584886972 ENCODE Processing Pipeline 036559462bd57c8579bdbee7cb3b09db https://www.encodeproject.org/files/ENCFF211CPA/@@download/ENCFF211CPA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887OHO bigWig fold change over control ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF294QEI, ENCFF446MDK 1022791648 ENCODE Processing Pipeline 85ea9850a530102122ad91f02418d5b0 https://www.encodeproject.org/files/ENCFF887OHO/@@download/ENCFF887OHO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF872SGZ bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF446MDK 6077650 ENCODE Processing Pipeline 05d243d55e080c84180936e37ab565d3 https://www.encodeproject.org/files/ENCFF872SGZ/@@download/ENCFF872SGZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428OFF bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF294QEI 6350655 ENCODE Processing Pipeline 56971d9c39d8d6c258ca5ae2ad9eab85 https://www.encodeproject.org/files/ENCFF428OFF/@@download/ENCFF428OFF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF777SIM bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF294QEI, ENCFF446MDK 6904459 ENCODE Processing Pipeline a51d0b56410ba9eb445ca1cd4d5ba396 https://www.encodeproject.org/files/ENCFF777SIM/@@download/ENCFF777SIM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF957GPN bigBed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF872SGZ 13166209 ENCODE Processing Pipeline 175215783937a4aa88df817ecebf181e https://www.encodeproject.org/files/ENCFF957GPN/@@download/ENCFF957GPN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF708MKO bigBed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF428OFF 13066598 ENCODE Processing Pipeline 8a3325e15b8b5d4fe6cc37a727bf544d https://www.encodeproject.org/files/ENCFF708MKO/@@download/ENCFF708MKO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF141LSM bigBed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF777SIM 13037627 ENCODE Processing Pipeline 2ef1c31b17c92a5fdbcd1596dda06d56 https://www.encodeproject.org/files/ENCFF141LSM/@@download/ENCFF141LSM.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF577PUV bed narrowPeak conservative idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF428OFF, ENCFF777SIM, ENCFF872SGZ 298257 ENCODE Processing Pipeline e454783206cba7ce7269975b442309a5 https://www.encodeproject.org/files/ENCFF577PUV/@@download/ENCFF577PUV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF969FIA bigBed narrowPeak conservative idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF577PUV 547108 ENCODE Processing Pipeline 876faabdcb6b6e544abe80a46f6616fd https://www.encodeproject.org/files/ENCFF969FIA/@@download/ENCFF969FIA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF713BVZ bed narrowPeak optimal idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF428OFF, ENCFF777SIM, ENCFF872SGZ 305928 ENCODE Processing Pipeline d95bbdca4ba1455f35b2e3851aa80459 https://www.encodeproject.org/files/ENCFF713BVZ/@@download/ENCFF713BVZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF009ZAH bigBed narrowPeak optimal idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF713BVZ 558245 ENCODE Processing Pipeline b1e3a52b9c09275b7137bbd20853e21c https://www.encodeproject.org/files/ENCFF009ZAH/@@download/ENCFF009ZAH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF601TJN bigWig signal p-value ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF176VLC, ENCFF203ABR 1241572550 ENCODE Processing Pipeline 7e8c1cb3ac939548f1bd55f91e050a72 https://www.encodeproject.org/files/ENCFF601TJN/@@download/ENCFF601TJN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF576HSG bigWig signal p-value ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF020TIU, ENCFF203ABR 1368695166 ENCODE Processing Pipeline aa85ac448c9755365a7423d0cac6b5ed https://www.encodeproject.org/files/ENCFF576HSG/@@download/ENCFF576HSG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF196JYN bigWig signal p-value ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF020TIU, ENCFF176VLC, ENCFF203ABR 1571598481 ENCODE Processing Pipeline d1d5d8a2cf6c0495a636b8eb8f9cc283 https://www.encodeproject.org/files/ENCFF196JYN/@@download/ENCFF196JYN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF084ODA bigWig fold change over control ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF020TIU, ENCFF203ABR 1137475917 ENCODE Processing Pipeline 519ff2b2e8d4117b4433a887852af51a https://www.encodeproject.org/files/ENCFF084ODA/@@download/ENCFF084ODA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF248PES bigWig fold change over control ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF176VLC, ENCFF203ABR 1067367423 ENCODE Processing Pipeline e4b4fd41d29424d34588f28e9c781ade https://www.encodeproject.org/files/ENCFF248PES/@@download/ENCFF248PES.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF214FNF bigWig fold change over control ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF020TIU, ENCFF176VLC, ENCFF203ABR 1632229156 ENCODE Processing Pipeline ccd881ca069c6db53f2fabe40bb6fdbf https://www.encodeproject.org/files/ENCFF214FNF/@@download/ENCFF214FNF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF422ZGT bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF020TIU, ENCFF203ABR 6804452 ENCODE Processing Pipeline 5d6e148c590700b78dbefa0828444121 https://www.encodeproject.org/files/ENCFF422ZGT/@@download/ENCFF422ZGT.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF828DTV bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF020TIU, ENCFF176VLC, ENCFF203ABR 7111731 ENCODE Processing Pipeline a2d2883781a12e1ae6529dc2aa8abb51 https://www.encodeproject.org/files/ENCFF828DTV/@@download/ENCFF828DTV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378HNS bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF176VLC, ENCFF203ABR 6815754 ENCODE Processing Pipeline ede3ee264b1da058a6430fc59b8068ff https://www.encodeproject.org/files/ENCFF378HNS/@@download/ENCFF378HNS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF835LDJ bigBed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF378HNS 12990836 ENCODE Processing Pipeline 521e07a641892ad32f50f73bd4160f9a https://www.encodeproject.org/files/ENCFF835LDJ/@@download/ENCFF835LDJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF453VVF bed narrowPeak conservative idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF378HNS, ENCFF422ZGT, ENCFF828DTV 267244 ENCODE Processing Pipeline 800e1bbfbbedf349db4e50a989ba5be6 https://www.encodeproject.org/files/ENCFF453VVF/@@download/ENCFF453VVF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF030CRZ bigBed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF422ZGT 13173968 ENCODE Processing Pipeline ea4429a2ea045f57d47b591e151c59cb https://www.encodeproject.org/files/ENCFF030CRZ/@@download/ENCFF030CRZ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF881TVN bigBed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF828DTV 13005928 ENCODE Processing Pipeline 84178b1f08a4b77ac9c0b57c15b33754 https://www.encodeproject.org/files/ENCFF881TVN/@@download/ENCFF881TVN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF630YZM bigBed narrowPeak conservative idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF453VVF 509978 ENCODE Processing Pipeline 533b953e1d8a76e7a6e8993f00a400c9 https://www.encodeproject.org/files/ENCFF630YZM/@@download/ENCFF630YZM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738FXY bigBed narrowPeak optimal idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF545KZH 510707 ENCODE Processing Pipeline b8cbce63a051a212e91c6840d588cc66 https://www.encodeproject.org/files/ENCFF738FXY/@@download/ENCFF738FXY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF545KZH bed narrowPeak optimal idr thresholded peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF378HNS, ENCFF422ZGT, ENCFF828DTV 267764 ENCODE Processing Pipeline fd8d02890354779f4ffeccdb3fe95492 https://www.encodeproject.org/files/ENCFF545KZH/@@download/ENCFF545KZH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF243COH fastq reads ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF653WRQ 1662164283 Richard Myers, HAIB 9a4f54f3c07e28411f9ab626d6a6b583 https://www.encodeproject.org/files/ENCFF243COH/@@download/ENCFF243COH.fastq.gz Illumina HiSeq 2000 /files/ENCFF196GKM/ released antibody characterized with exemption experiment not submitted to GEO ENCFF653WRQ fastq reads ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF243COH 1623064384 Richard Myers, HAIB cef31a7ed58775a0220b77900542ae7d https://www.encodeproject.org/files/ENCFF653WRQ/@@download/ENCFF653WRQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF040RTO/ released antibody characterized with exemption experiment not submitted to GEO ENCFF632BUI bam unfiltered alignments ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF243COH, ENCFF653WRQ, ENCFF807MUK 3908579974 ENCODE Processing Pipeline e50fe9e27a8191e9ad99d0f0229fd2ce https://www.encodeproject.org/files/ENCFF632BUI/@@download/ENCFF632BUI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF924YJA bam alignments ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF243COH, ENCFF653WRQ, ENCFF807MUK 2805422755 ENCODE Processing Pipeline 7a93817ed05cfd2eeacdcde73d55df4c https://www.encodeproject.org/files/ENCFF924YJA/@@download/ENCFF924YJA.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF253XOS bam alignments ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF243COH, ENCFF643CGH, ENCFF653WRQ 2807845118 ENCODE Processing Pipeline b51abc604dc787564f2da70e4ab6abfd https://www.encodeproject.org/files/ENCFF253XOS/@@download/ENCFF253XOS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF397YWY bam unfiltered alignments ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF243COH, ENCFF643CGH, ENCFF653WRQ 3923963341 ENCODE Processing Pipeline 7fe96f1dda54b3b7b825282f46f26e3a https://www.encodeproject.org/files/ENCFF397YWY/@@download/ENCFF397YWY.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF478HBF bigWig signal p-value ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF253XOS, ENCFF762OSU 927424710 ENCODE Processing Pipeline 5b6d9be06f3141cb391f228b9d55732c https://www.encodeproject.org/files/ENCFF478HBF/@@download/ENCFF478HBF.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF958ZSA bed narrowPeak peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF253XOS, ENCFF762OSU 5979042 ENCODE Processing Pipeline 0e7640b1af5b54025eaafb9bb1abbcdc https://www.encodeproject.org/files/ENCFF958ZSA/@@download/ENCFF958ZSA.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF199GSW bigBed narrowPeak peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF958ZSA 13776885 ENCODE Processing Pipeline 76cc7ef724884191f20fe358ec8b454d https://www.encodeproject.org/files/ENCFF199GSW/@@download/ENCFF199GSW.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF503UCK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF419RSJ, ENCFF958ZSA 565328 ENCODE Processing Pipeline 5344f39ca77eb2f821f9609a0fcf5124 https://www.encodeproject.org/files/ENCFF503UCK/@@download/ENCFF503UCK.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF675WFV bigWig fold change over control ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF253XOS, ENCFF762OSU 810504463 ENCODE Processing Pipeline 4459bad73544775f1071dd9190ec5fa8 https://www.encodeproject.org/files/ENCFF675WFV/@@download/ENCFF675WFV.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF933HIR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF503UCK 1181958 ENCODE Processing Pipeline 2911071506dcea59c7f087cbf804fb3e https://www.encodeproject.org/files/ENCFF933HIR/@@download/ENCFF933HIR.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF654MRF bed narrowPeak peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF650TKO, ENCFF924YJA 5953485 ENCODE Processing Pipeline 376cf1563883a5732e3cbc0617dff618 https://www.encodeproject.org/files/ENCFF654MRF/@@download/ENCFF654MRF.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF890QBA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF844KZH 1173235 ENCODE Processing Pipeline fb3ddde6afb85a7f22eb2ad734df63e8 https://www.encodeproject.org/files/ENCFF890QBA/@@download/ENCFF890QBA.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF475CQZ bigBed narrowPeak peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF654MRF 13766629 ENCODE Processing Pipeline 94669a545f3e376ae1d66a95fb6cc412 https://www.encodeproject.org/files/ENCFF475CQZ/@@download/ENCFF475CQZ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF502WCH bigWig fold change over control ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF650TKO, ENCFF924YJA 812162137 ENCODE Processing Pipeline 4afb1d576af836c8e2d3579fb40f638f https://www.encodeproject.org/files/ENCFF502WCH/@@download/ENCFF502WCH.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF833TFW bigWig signal p-value ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF650TKO, ENCFF924YJA 925923179 ENCODE Processing Pipeline e15792d411e0026aa98c6ccde415970d https://www.encodeproject.org/files/ENCFF833TFW/@@download/ENCFF833TFW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF844KZH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF654MRF 560862 ENCODE Processing Pipeline 579922624b4c5101d3bce042d7a219e4 https://www.encodeproject.org/files/ENCFF844KZH/@@download/ENCFF844KZH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF790RMU fastq reads ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2279635316 Richard Myers, HAIB fd3dce7943b337a2d8939b48a00040d5 SRA:SRR5339623 https://www.encodeproject.org/files/ENCFF790RMU/@@download/ENCFF790RMU.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616WVB fastq reads ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1723331042 Richard Myers, HAIB e0f7e696e8744ea144fa70ff8cbb377c SRA:SRR5339624 https://www.encodeproject.org/files/ENCFF616WVB/@@download/ENCFF616WVB.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249BPW bam unfiltered alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF790RMU 2410780370 ENCODE Processing Pipeline aca84cf963bddd858fe18eb635e203e5 https://www.encodeproject.org/files/ENCFF249BPW/@@download/ENCFF249BPW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF664MWU bam unfiltered alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF616WVB, ENCFF643CGH 1842798223 ENCODE Processing Pipeline e33505ca6936091f5ab58972fb7e5a39 https://www.encodeproject.org/files/ENCFF664MWU/@@download/ENCFF664MWU.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF310SUR bam unfiltered alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF616WVB, ENCFF807MUK 1839467079 ENCODE Processing Pipeline 58f1a8c07055263d98c986f941b4907a https://www.encodeproject.org/files/ENCFF310SUR/@@download/ENCFF310SUR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF349QEI bam unfiltered alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF790RMU, ENCFF807MUK 2406079455 ENCODE Processing Pipeline a2ed9c9abbaa48ce655e0e9e337a4bd9 https://www.encodeproject.org/files/ENCFF349QEI/@@download/ENCFF349QEI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF567OGN bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF616WVB, ENCFF643CGH 1439307615 ENCODE Processing Pipeline eacd87f90e03493b1efaf0db49f8ea20 https://www.encodeproject.org/files/ENCFF567OGN/@@download/ENCFF567OGN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF279BTT bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF616WVB, ENCFF807MUK 1438647599 ENCODE Processing Pipeline ded5a6b84c1e3dd391ec40f599f43206 https://www.encodeproject.org/files/ENCFF279BTT/@@download/ENCFF279BTT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF862HYK bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF790RMU 1848370199 ENCODE Processing Pipeline 83e8ec17c17d58c657507d98c8282a6f https://www.encodeproject.org/files/ENCFF862HYK/@@download/ENCFF862HYK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF497WGL bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF790RMU, ENCFF807MUK 1847358536 ENCODE Processing Pipeline df8fcb925d83ae5c99ade53f6e2563a2 https://www.encodeproject.org/files/ENCFF497WGL/@@download/ENCFF497WGL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF005VBX bigWig signal p-value ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF862HYK 644267592 ENCODE Processing Pipeline 677002dee988948e0704338d6175dcda https://www.encodeproject.org/files/ENCFF005VBX/@@download/ENCFF005VBX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF895HNO bigWig signal p-value ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF567OGN 634829619 ENCODE Processing Pipeline 185e12af03d311a39fc921384d8199d4 https://www.encodeproject.org/files/ENCFF895HNO/@@download/ENCFF895HNO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF777QNZ bigWig signal p-value ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF567OGN, ENCFF862HYK 667276646 ENCODE Processing Pipeline 742e5f797cb337b0fb82721991d7a3f6 https://www.encodeproject.org/files/ENCFF777QNZ/@@download/ENCFF777QNZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF741YVF bigWig fold change over control ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF862HYK 622108039 ENCODE Processing Pipeline 0c6b4156f314efdfaa86a5f9533509e3 https://www.encodeproject.org/files/ENCFF741YVF/@@download/ENCFF741YVF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF937ZMU bigWig fold change over control ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF567OGN 522653734 ENCODE Processing Pipeline c32dec329898b391817db0d959ac655a https://www.encodeproject.org/files/ENCFF937ZMU/@@download/ENCFF937ZMU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF485OQI bigWig fold change over control ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF567OGN, ENCFF862HYK 947099724 ENCODE Processing Pipeline b55eb1d992e483d16d5d929ac48dcb25 https://www.encodeproject.org/files/ENCFF485OQI/@@download/ENCFF485OQI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF102VFY bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF862HYK 6099684 ENCODE Processing Pipeline 5cc264d47e14b8e3fb3771492d7f961c https://www.encodeproject.org/files/ENCFF102VFY/@@download/ENCFF102VFY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF807DCB bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF567OGN, ENCFF862HYK 6794517 ENCODE Processing Pipeline 3ab4f0c8a2ee53c84796605e066fd2e5 https://www.encodeproject.org/files/ENCFF807DCB/@@download/ENCFF807DCB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF058IJE bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF567OGN 5957119 ENCODE Processing Pipeline 16665931f9ded59f1cb035171c3aa2fa https://www.encodeproject.org/files/ENCFF058IJE/@@download/ENCFF058IJE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF152RZH bigBed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF102VFY 13164658 ENCODE Processing Pipeline e26f6af968342d089cb6f337f447b1ec https://www.encodeproject.org/files/ENCFF152RZH/@@download/ENCFF152RZH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469NMR bigBed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF058IJE 13151951 ENCODE Processing Pipeline 788240a40fb7aee18fe241a4ad7c635a https://www.encodeproject.org/files/ENCFF469NMR/@@download/ENCFF469NMR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF047DKK bigBed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF807DCB 13139276 ENCODE Processing Pipeline 214887ef55db069a109a0e6a932fd37e https://www.encodeproject.org/files/ENCFF047DKK/@@download/ENCFF047DKK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF338JPJ bed narrowPeak conservative idr thresholded peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF058IJE, ENCFF102VFY, ENCFF419RSJ, ENCFF807DCB 493078 ENCODE Processing Pipeline 1f5c9e6da03aafd682a469f77cbb3a09 https://www.encodeproject.org/files/ENCFF338JPJ/@@download/ENCFF338JPJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF753WHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF963OLI 960372 ENCODE Processing Pipeline f37d3b9e55f4761b26c2e8ad9409199b https://www.encodeproject.org/files/ENCFF753WHJ/@@download/ENCFF753WHJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF080PGY bigBed narrowPeak conservative idr thresholded peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF338JPJ 958345 ENCODE Processing Pipeline f148d7283ebe2204aa09538fd9fa80a2 https://www.encodeproject.org/files/ENCFF080PGY/@@download/ENCFF080PGY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF963OLI bed narrowPeak optimal idr thresholded peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF058IJE, ENCFF102VFY, ENCFF419RSJ, ENCFF807DCB 494318 ENCODE Processing Pipeline b495a0cd3d350109d1fc1046cfa31e9b https://www.encodeproject.org/files/ENCFF963OLI/@@download/ENCFF963OLI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF279PAG bigWig signal p-value ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF279BTT 1135149455 ENCODE Processing Pipeline bd9fac86b69ea6c0c07f2e94db2f66c8 https://www.encodeproject.org/files/ENCFF279PAG/@@download/ENCFF279PAG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF562WRI bigWig signal p-value ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF497WGL 1237509312 ENCODE Processing Pipeline a90a69aa53cda702c0928f1beeec3eb7 https://www.encodeproject.org/files/ENCFF562WRI/@@download/ENCFF562WRI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF983LZD bigWig signal p-value ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF279BTT, ENCFF497WGL 1621617477 ENCODE Processing Pipeline 4033e1280d2dc11bed85c6f2c92b089c https://www.encodeproject.org/files/ENCFF983LZD/@@download/ENCFF983LZD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF541HKS bigWig fold change over control ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF497WGL 1135982862 ENCODE Processing Pipeline 3da772f46e41333390479f2e11108291 https://www.encodeproject.org/files/ENCFF541HKS/@@download/ENCFF541HKS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF776UDL bigWig fold change over control ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF279BTT 983503315 ENCODE Processing Pipeline 991fcb0cf145c1d65b5e6f6d2b35fec5 https://www.encodeproject.org/files/ENCFF776UDL/@@download/ENCFF776UDL.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF697FMA bigWig fold change over control ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF279BTT, ENCFF497WGL 1596177638 ENCODE Processing Pipeline e5626d77cc1afb92024bd0b125b0294c https://www.encodeproject.org/files/ENCFF697FMA/@@download/ENCFF697FMA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF453VKQ bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF497WGL 6811325 ENCODE Processing Pipeline 594210d3e8e4ea96bd5998be037332c4 https://www.encodeproject.org/files/ENCFF453VKQ/@@download/ENCFF453VKQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF349QFY bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF279BTT, ENCFF497WGL 7038302 ENCODE Processing Pipeline 2190f48af78d154677b7e2c1ca41176c https://www.encodeproject.org/files/ENCFF349QFY/@@download/ENCFF349QFY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF780MVK bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF279BTT 6594136 ENCODE Processing Pipeline 1ed40869f9d54b9da00cfb5799464aa6 https://www.encodeproject.org/files/ENCFF780MVK/@@download/ENCFF780MVK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF147QAB bigBed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF453VKQ 13207506 ENCODE Processing Pipeline 94194b0eeb688d1db9b8d92cef2ac467 https://www.encodeproject.org/files/ENCFF147QAB/@@download/ENCFF147QAB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF257OLY bigBed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF349QFY 13084215 ENCODE Processing Pipeline ad3ead9fd312339d6638c170f4cb9ac8 https://www.encodeproject.org/files/ENCFF257OLY/@@download/ENCFF257OLY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF524KAN bigBed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF780MVK 13136074 ENCODE Processing Pipeline ae7dd7b3bbd09950e279d4b380ef8b87 https://www.encodeproject.org/files/ENCFF524KAN/@@download/ENCFF524KAN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402MOI bed narrowPeak optimal idr thresholded peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF349QFY, ENCFF453VKQ, ENCFF780MVK 450880 ENCODE Processing Pipeline e3e8a3a41e6dc378f71169bf4355e0fc https://www.encodeproject.org/files/ENCFF402MOI/@@download/ENCFF402MOI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF507LZT bigBed narrowPeak optimal idr thresholded peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF402MOI 755859 ENCODE Processing Pipeline d4f3fe1f266bbbf58c3c3725a3f5e067 https://www.encodeproject.org/files/ENCFF507LZT/@@download/ENCFF507LZT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF859HQD fastq reads ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 1 76 single-ended 1755667447 Richard Myers, HAIB 7ab82feb50840f25c3a38ad1a9f66c8e https://www.encodeproject.org/files/ENCFF859HQD/@@download/ENCFF859HQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF017ARV bam unfiltered alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 76 ENCFF643CGH, ENCFF859HQD 1983707494 ENCODE Processing Pipeline 87dd8e57050b1a2ede6c0e02e3190526 https://www.encodeproject.org/files/ENCFF017ARV/@@download/ENCFF017ARV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF060ZNG bam unfiltered alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 76 ENCFF807MUK, ENCFF859HQD 1979646213 ENCODE Processing Pipeline 865800717e1ede4599726320de7d28fb https://www.encodeproject.org/files/ENCFF060ZNG/@@download/ENCFF060ZNG.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF723QLF bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 76 ENCFF643CGH, ENCFF859HQD 1294422536 ENCODE Processing Pipeline 5c7721dc205d71cde745ce46afe47ac3 https://www.encodeproject.org/files/ENCFF723QLF/@@download/ENCFF723QLF.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF140YFE bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 76 ENCFF807MUK, ENCFF859HQD 1293816958 ENCODE Processing Pipeline d9ce03fbf5f943503cb620d9f1c14769 https://www.encodeproject.org/files/ENCFF140YFE/@@download/ENCFF140YFE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF492HJR fastq reads ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 1 76 single-ended 1450512724 Richard Myers, HAIB c630c59e51c7133243dc37150dda1ad1 https://www.encodeproject.org/files/ENCFF492HJR/@@download/ENCFF492HJR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF195KYB bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 76 ENCFF492HJR, ENCFF643CGH 1251882630 ENCODE Processing Pipeline a619723a11242fae875a66bca556ac90 https://www.encodeproject.org/files/ENCFF195KYB/@@download/ENCFF195KYB.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF250MVY bam unfiltered alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 76 ENCFF492HJR, ENCFF807MUK 1682521949 ENCODE Processing Pipeline 42f62f6e42fce14106cf33e78d8cdf85 https://www.encodeproject.org/files/ENCFF250MVY/@@download/ENCFF250MVY.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF459JPC bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 76 ENCFF492HJR, ENCFF807MUK 1251594253 ENCODE Processing Pipeline c24b0be51d51f788c1cab1c5d425b7e8 https://www.encodeproject.org/files/ENCFF459JPC/@@download/ENCFF459JPC.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF711EIJ bam unfiltered alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 76 ENCFF492HJR, ENCFF643CGH 1685183132 ENCODE Processing Pipeline e846251ff71c8e8cee08025fa4a60415 https://www.encodeproject.org/files/ENCFF711EIJ/@@download/ENCFF711EIJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF338DSY bigWig fold change over control ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF195KYB 438355195 ENCODE Processing Pipeline 68bae1ede29f4fcc18e6ae4ec94c833d https://www.encodeproject.org/files/ENCFF338DSY/@@download/ENCFF338DSY.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF741BBR bigWig signal p-value ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF140YFE, ENCFF459JPC 659027563 ENCODE Processing Pipeline c751542d4d55645a4f5c5475de10b0af https://www.encodeproject.org/files/ENCFF741BBR/@@download/ENCFF741BBR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF958YNV bigWig signal p-value ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF140YFE 472998285 ENCODE Processing Pipeline b7f3cf0680b099a1301413fff5f929d5 https://www.encodeproject.org/files/ENCFF958YNV/@@download/ENCFF958YNV.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF434UDW bigWig signal p-value ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF723QLF 534805191 ENCODE Processing Pipeline 4ef68b612d958cc826b5b778c597d313 https://www.encodeproject.org/files/ENCFF434UDW/@@download/ENCFF434UDW.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF272WKA bigWig fold change over control ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF140YFE 484546299 ENCODE Processing Pipeline 660d237f3c2ed422cd49e75c59ed1cbe https://www.encodeproject.org/files/ENCFF272WKA/@@download/ENCFF272WKA.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF356IEQ bigWig signal p-value ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF195KYB 537219243 ENCODE Processing Pipeline 60f888b83264fd43e839a47730a9b2f2 https://www.encodeproject.org/files/ENCFF356IEQ/@@download/ENCFF356IEQ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF174XPH bigWig fold change over control ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF459JPC 435089789 ENCODE Processing Pipeline 6291d7466b3b972a314ca247e7a1dcd8 https://www.encodeproject.org/files/ENCFF174XPH/@@download/ENCFF174XPH.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF302EAX bigWig signal p-value ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF459JPC 533267106 ENCODE Processing Pipeline 2a7c72c3e9fea9f8374a02f8c4251bce https://www.encodeproject.org/files/ENCFF302EAX/@@download/ENCFF302EAX.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF079RIX bigWig signal p-value ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF195KYB, ENCFF723QLF 656821109 ENCODE Processing Pipeline e782400b412471da26bf6c2966a7b829 https://www.encodeproject.org/files/ENCFF079RIX/@@download/ENCFF079RIX.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF082EHS bigWig fold change over control ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF723QLF 493294441 ENCODE Processing Pipeline 0496c0ad92ae042e44a4da433673a5bb https://www.encodeproject.org/files/ENCFF082EHS/@@download/ENCFF082EHS.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF486BIW bigWig fold change over control ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF140YFE, ENCFF459JPC 805978778 ENCODE Processing Pipeline f63961ccfe7fd767a90399710914f805 https://www.encodeproject.org/files/ENCFF486BIW/@@download/ENCFF486BIW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF544WYW bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF459JPC 6453526 ENCODE Processing Pipeline 0e5907b1ed6d2c97762f3244faa42e7c https://www.encodeproject.org/files/ENCFF544WYW/@@download/ENCFF544WYW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF175MNL bigBed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF654CCR 12878761 ENCODE Processing Pipeline 2616c2cddf718670d86c5d015caaa00b https://www.encodeproject.org/files/ENCFF175MNL/@@download/ENCFF175MNL.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF780MPL bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF723QLF 6433850 ENCODE Processing Pipeline dedae12395712b9e4b742536359e380c https://www.encodeproject.org/files/ENCFF780MPL/@@download/ENCFF780MPL.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF078QFT bigWig fold change over control ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF195KYB, ENCFF723QLF 798888985 ENCODE Processing Pipeline 160a693323370dd146f69511aa8c085c https://www.encodeproject.org/files/ENCFF078QFT/@@download/ENCFF078QFT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF243RSC bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF140YFE, ENCFF459JPC 6957327 ENCODE Processing Pipeline 66d277f57826006867933e7638a690e1 https://www.encodeproject.org/files/ENCFF243RSC/@@download/ENCFF243RSC.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF345LNT bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF195KYB, ENCFF723QLF 6930156 ENCODE Processing Pipeline 6f3057d57480be884afe31b7b49270cb https://www.encodeproject.org/files/ENCFF345LNT/@@download/ENCFF345LNT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF513LKI bigBed narrowPeak conservative idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF736WQJ 801653 ENCODE Processing Pipeline 877757fc7ccbb448f96fadb39c655d1a https://www.encodeproject.org/files/ENCFF513LKI/@@download/ENCFF513LKI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF654CCR bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF140YFE 6446754 ENCODE Processing Pipeline 9063deb57c96f58e6ab3fd4e77d163be https://www.encodeproject.org/files/ENCFF654CCR/@@download/ENCFF654CCR.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF673AKR bigBed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF544WYW 12614659 ENCODE Processing Pipeline 55c356afb52436d2feadfefd442772b1 https://www.encodeproject.org/files/ENCFF673AKR/@@download/ENCFF673AKR.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF071KCP bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF195KYB 6480017 ENCODE Processing Pipeline d39ca820912aac1490451cab79acd906 https://www.encodeproject.org/files/ENCFF071KCP/@@download/ENCFF071KCP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF492DNY bigBed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF243RSC 12651726 ENCODE Processing Pipeline 5cd4692b440c0016aee2b761fdd10074 https://www.encodeproject.org/files/ENCFF492DNY/@@download/ENCFF492DNY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF716MKU bed narrowPeak optimal idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF001TDO, ENCFF243RSC, ENCFF544WYW, ENCFF654CCR 530108 ENCODE Processing Pipeline e8448b8cc9fdc022242ae89016faa9ac https://www.encodeproject.org/files/ENCFF716MKU/@@download/ENCFF716MKU.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF736WQJ bed narrowPeak conservative idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF001TDO, ENCFF243RSC, ENCFF544WYW, ENCFF654CCR 418197 ENCODE Processing Pipeline 95a9bb239a2e57dc72041f2f55ee835a https://www.encodeproject.org/files/ENCFF736WQJ/@@download/ENCFF736WQJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF912BTF bigBed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF780MPL 12886461 ENCODE Processing Pipeline 18534726081e3a9eff6a682d4761bb99 https://www.encodeproject.org/files/ENCFF912BTF/@@download/ENCFF912BTF.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF634MFV bigBed narrowPeak optimal idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF716MKU 966326 ENCODE Processing Pipeline 4113c34a75299e4414ed37819355d66d https://www.encodeproject.org/files/ENCFF634MFV/@@download/ENCFF634MFV.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF290MIC bigBed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF071KCP 12650468 ENCODE Processing Pipeline b5e70d0eca3eb9517d7d73fee348ccd2 https://www.encodeproject.org/files/ENCFF290MIC/@@download/ENCFF290MIC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF802MDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF650ZHD 798175 ENCODE Processing Pipeline ea6fd17747a59f3a87ecc426ba95e6a9 https://www.encodeproject.org/files/ENCFF802MDZ/@@download/ENCFF802MDZ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF650ZHD bed narrowPeak conservative idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF071KCP, ENCFF345LNT, ENCFF419RSJ, ENCFF780MPL 416298 ENCODE Processing Pipeline 492aa2c470464f961fc942b6dd45c0a3 https://www.encodeproject.org/files/ENCFF650ZHD/@@download/ENCFF650ZHD.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF312OZQ bigBed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF345LNT 12633190 ENCODE Processing Pipeline 0fd3d59e868d1536fd82072c8463f8d4 https://www.encodeproject.org/files/ENCFF312OZQ/@@download/ENCFF312OZQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF423USK bed narrowPeak optimal idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF071KCP, ENCFF345LNT, ENCFF419RSJ, ENCFF780MPL 518602 ENCODE Processing Pipeline a696d71d699138c953dd4d4008f21fc2 https://www.encodeproject.org/files/ENCFF423USK/@@download/ENCFF423USK.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF933WLI bigBed narrowPeak optimal idr thresholded peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1, 2 ENCFF423USK 948875 ENCODE Processing Pipeline a70471db89a9686f41f1b5415d2e24b9 https://www.encodeproject.org/files/ENCFF933WLI/@@download/ENCFF933WLI.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF554ZQU fastq reads ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF762GTE 3664938455 Richard Myers, HAIB b2cb4a1caaef04f5cac88053a4cf45dc SRA:SRR6212611 https://www.encodeproject.org/files/ENCFF554ZQU/@@download/ENCFF554ZQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF485SFR/ released antibody characterized with exemption missing control alignments ENCFF762GTE fastq reads ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF554ZQU 3732281413 Richard Myers, HAIB 263c78688e0a439625c9527bb741f48d SRA:SRR6212611 https://www.encodeproject.org/files/ENCFF762GTE/@@download/ENCFF762GTE.fastq.gz Illumina HiSeq 2000 /files/ENCFF005FTS/ released antibody characterized with exemption missing control alignments ENCFF517ALU bam unfiltered alignments ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF554ZQU, ENCFF762GTE, ENCFF807MUK 8571358508 ENCODE Processing Pipeline c9b2b46042822930ed63b8da6a52ea0d https://www.encodeproject.org/files/ENCFF517ALU/@@download/ENCFF517ALU.bam hg19 released antibody characterized with exemption missing control alignments ENCFF150JKN bam alignments ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF554ZQU, ENCFF762GTE, ENCFF807MUK 6365634838 ENCODE Processing Pipeline cbabadb39bde74afb75a3122f0a7188c https://www.encodeproject.org/files/ENCFF150JKN/@@download/ENCFF150JKN.bam hg19 released antibody characterized with exemption missing control alignments ENCFF222RIN bam unfiltered alignments ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF554ZQU, ENCFF643CGH, ENCFF762GTE 8606142626 ENCODE Processing Pipeline 28f5424545eaa23cc17b3d908407ef6c https://www.encodeproject.org/files/ENCFF222RIN/@@download/ENCFF222RIN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF236PLN bam alignments ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF554ZQU, ENCFF643CGH, ENCFF762GTE 6372370294 ENCODE Processing Pipeline d80602e1fa5bcad59056adc6c24b7efd https://www.encodeproject.org/files/ENCFF236PLN/@@download/ENCFF236PLN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF786ZRF bigWig signal p-value ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF236PLN 1320773451 ENCODE Processing Pipeline 041bfb18f32f26151ed54e0ad64d0a62 https://www.encodeproject.org/files/ENCFF786ZRF/@@download/ENCFF786ZRF.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF439FLW bigWig fold change over control ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF236PLN 1761240776 ENCODE Processing Pipeline 3079d64b1494648dde60cb2537d6a85c https://www.encodeproject.org/files/ENCFF439FLW/@@download/ENCFF439FLW.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF096HAF bed narrowPeak peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF236PLN 5982402 ENCODE Processing Pipeline a0efac6f7827661aec7b2f8feb053793 https://www.encodeproject.org/files/ENCFF096HAF/@@download/ENCFF096HAF.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF325GMW bigBed narrowPeak peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF096HAF 11916821 ENCODE Processing Pipeline b9bd419e43714fad2f68a31bec2dc45a https://www.encodeproject.org/files/ENCFF325GMW/@@download/ENCFF325GMW.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF481USU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF096HAF, ENCFF419RSJ 34672 ENCODE Processing Pipeline 50478453a1b0a9d30f58b8a58da62049 https://www.encodeproject.org/files/ENCFF481USU/@@download/ENCFF481USU.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF646OAF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF481USU 123096 ENCODE Processing Pipeline d5a709c2150d555e8cf6bd325a6ec101 https://www.encodeproject.org/files/ENCFF646OAF/@@download/ENCFF646OAF.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF015VSN bigWig signal p-value ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF150JKN 1333800156 ENCODE Processing Pipeline 4ea707c6709e741926cfe3f0b4e7f2fb https://www.encodeproject.org/files/ENCFF015VSN/@@download/ENCFF015VSN.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF571CAU bed narrowPeak peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF150JKN 5928073 ENCODE Processing Pipeline f43861ef67f10c5c21e74e201183cecb https://www.encodeproject.org/files/ENCFF571CAU/@@download/ENCFF571CAU.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF928UPT bigWig fold change over control ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF150JKN 1775494297 ENCODE Processing Pipeline 41b2d1d151486b3396646c9efad18b56 https://www.encodeproject.org/files/ENCFF928UPT/@@download/ENCFF928UPT.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF871ZOY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF047QFE 118097 ENCODE Processing Pipeline 8eceb8eb26040580d23be4e8455e2b35 https://www.encodeproject.org/files/ENCFF871ZOY/@@download/ENCFF871ZOY.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF536DNA bigBed narrowPeak peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF571CAU 11913653 ENCODE Processing Pipeline 85f4f648015aecc0f1100fb1b3bf26cc https://www.encodeproject.org/files/ENCFF536DNA/@@download/ENCFF536DNA.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF047QFE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF571CAU 32863 ENCODE Processing Pipeline 76490b8e8a67bc6345cc1bd7d4803f9b https://www.encodeproject.org/files/ENCFF047QFE/@@download/ENCFF047QFE.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF096ZDV fastq reads ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1150001557 Richard Myers, HAIB 7760d83e8b57c4d994c595cf344da3ee SRA:SRR5339246 https://www.encodeproject.org/files/ENCFF096ZDV/@@download/ENCFF096ZDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF158NYT fastq reads ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1128293897 Richard Myers, HAIB 598d9e266a093f57beee09123fe62b90 SRA:SRR5339245 https://www.encodeproject.org/files/ENCFF158NYT/@@download/ENCFF158NYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF916QTN bam unfiltered alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF158NYT, ENCFF643CGH 1376319275 ENCODE Processing Pipeline 5fddba4a92de6fa9084e29efa3b8ded2 https://www.encodeproject.org/files/ENCFF916QTN/@@download/ENCFF916QTN.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF132JHZ bam unfiltered alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF096ZDV, ENCFF643CGH 1385131824 ENCODE Processing Pipeline 6326610b39ab89ab1b8c8a498d9b7838 https://www.encodeproject.org/files/ENCFF132JHZ/@@download/ENCFF132JHZ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF972SOH bam unfiltered alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF158NYT, ENCFF807MUK 1372099280 ENCODE Processing Pipeline 6d2340a93a2615219976a05232e11da7 https://www.encodeproject.org/files/ENCFF972SOH/@@download/ENCFF972SOH.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF844DSF bam unfiltered alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF096ZDV, ENCFF807MUK 1380538399 ENCODE Processing Pipeline d138c56d0924219ac00704c761e6d36f https://www.encodeproject.org/files/ENCFF844DSF/@@download/ENCFF844DSF.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF953PIE bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF096ZDV, ENCFF643CGH 1063126377 ENCODE Processing Pipeline d51d0b230939a69165560ace03031b4c https://www.encodeproject.org/files/ENCFF953PIE/@@download/ENCFF953PIE.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF417TWE bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF158NYT, ENCFF643CGH 1051152011 ENCODE Processing Pipeline 8f95e2600705c4416138bda2cea60ef6 https://www.encodeproject.org/files/ENCFF417TWE/@@download/ENCFF417TWE.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616BTZ bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF096ZDV, ENCFF807MUK 1061929131 ENCODE Processing Pipeline db6fce2b46572d3329f15a48b4410305 https://www.encodeproject.org/files/ENCFF616BTZ/@@download/ENCFF616BTZ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851OMU bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF158NYT, ENCFF807MUK 1050260466 ENCODE Processing Pipeline c439c3d26d8e2b1eef81d0710c1039f9 https://www.encodeproject.org/files/ENCFF851OMU/@@download/ENCFF851OMU.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530FQU bigWig signal p-value ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF953PIE 454960460 ENCODE Processing Pipeline 9f6807f48020784119f57905c6d27ef6 https://www.encodeproject.org/files/ENCFF530FQU/@@download/ENCFF530FQU.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF880PWR bigWig signal p-value ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF417TWE 459585689 ENCODE Processing Pipeline f84eb2afd04e9ad777c39e77df3369ad https://www.encodeproject.org/files/ENCFF880PWR/@@download/ENCFF880PWR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF215WTV bigWig signal p-value ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF417TWE, ENCFF953PIE 680646969 ENCODE Processing Pipeline 70ce205c5ab9f1f0aa94af500a062621 https://www.encodeproject.org/files/ENCFF215WTV/@@download/ENCFF215WTV.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF572YKR bigWig fold change over control ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF417TWE 382095865 ENCODE Processing Pipeline df22ce8c86b307430302a7ef7c1e26d4 https://www.encodeproject.org/files/ENCFF572YKR/@@download/ENCFF572YKR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF179MGX bigWig fold change over control ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF953PIE 463511867 ENCODE Processing Pipeline 47b65a870d1436cc9b20e14212b8ecb9 https://www.encodeproject.org/files/ENCFF179MGX/@@download/ENCFF179MGX.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF555CAR bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF953PIE 5204779 ENCODE Processing Pipeline 6b8e487e895b7d94bd3931b731d6e40e https://www.encodeproject.org/files/ENCFF555CAR/@@download/ENCFF555CAR.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF573WUB bigWig fold change over control ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF417TWE, ENCFF953PIE 703726262 ENCODE Processing Pipeline f8de4209894729efd73297a99d3da87b https://www.encodeproject.org/files/ENCFF573WUB/@@download/ENCFF573WUB.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF816UCP bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF417TWE, ENCFF953PIE 3860561 ENCODE Processing Pipeline cfa9064c88377417e6ee1f3241138342 https://www.encodeproject.org/files/ENCFF816UCP/@@download/ENCFF816UCP.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF118XJU bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF417TWE 4564501 ENCODE Processing Pipeline 18f22e7eae932532730781d1c1e6513a https://www.encodeproject.org/files/ENCFF118XJU/@@download/ENCFF118XJU.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF786ARO bigBed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF555CAR 13241983 ENCODE Processing Pipeline 83c216f9019153a180e22422004bfc6b https://www.encodeproject.org/files/ENCFF786ARO/@@download/ENCFF786ARO.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF709DKY bigBed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF118XJU 10866417 ENCODE Processing Pipeline 37775ed107e546c86428542f18d66c05 https://www.encodeproject.org/files/ENCFF709DKY/@@download/ENCFF709DKY.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF492YUE bed narrowPeak conservative idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF118XJU, ENCFF419RSJ, ENCFF555CAR, ENCFF816UCP 92416 ENCODE Processing Pipeline 5356e15fde55c322daf10cabfc3b7c42 https://www.encodeproject.org/files/ENCFF492YUE/@@download/ENCFF492YUE.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF108SWW bigBed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF816UCP 8861778 ENCODE Processing Pipeline 1cf5b9c633730da4a678cd514671725b https://www.encodeproject.org/files/ENCFF108SWW/@@download/ENCFF108SWW.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF219KQD bed narrowPeak optimal idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF118XJU, ENCFF419RSJ, ENCFF555CAR, ENCFF816UCP 96642 ENCODE Processing Pipeline 37d4ec54e1348b58a00981165750e36b https://www.encodeproject.org/files/ENCFF219KQD/@@download/ENCFF219KQD.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530TAN bigBed narrowPeak conservative idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF492YUE 241716 ENCODE Processing Pipeline 840f8e89a9fb53bf463b5ebdff300f3d https://www.encodeproject.org/files/ENCFF530TAN/@@download/ENCFF530TAN.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF211OJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF219KQD 249540 ENCODE Processing Pipeline c2e1161893a9e19b96777c65ea6b51bf https://www.encodeproject.org/files/ENCFF211OJQ/@@download/ENCFF211OJQ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF219KRX bigWig signal p-value ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF616BTZ 1204877010 ENCODE Processing Pipeline 803ee2c454240a909b59c792d5af4448 https://www.encodeproject.org/files/ENCFF219KRX/@@download/ENCFF219KRX.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF544JVV bigWig signal p-value ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF851OMU 1189178254 ENCODE Processing Pipeline 8b44d99e8546d8c8557f0c39115735fd https://www.encodeproject.org/files/ENCFF544JVV/@@download/ENCFF544JVV.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF077JJL bigWig signal p-value ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF616BTZ, ENCFF851OMU 1305954756 ENCODE Processing Pipeline 0302c13810ce72d8a31d949336252327 https://www.encodeproject.org/files/ENCFF077JJL/@@download/ENCFF077JJL.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF848MUF bigWig fold change over control ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF616BTZ 793823988 ENCODE Processing Pipeline 2e8707ac8ecca5cdf49267ffb42ffc9f https://www.encodeproject.org/files/ENCFF848MUF/@@download/ENCFF848MUF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF494PFO bigWig fold change over control ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF851OMU 742707194 ENCODE Processing Pipeline 4c815a85487c1626b853bd1bd4345336 https://www.encodeproject.org/files/ENCFF494PFO/@@download/ENCFF494PFO.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF164AVP bigWig fold change over control ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF616BTZ, ENCFF851OMU 1199914024 ENCODE Processing Pipeline 631c0616f9acc902b6e7a10e31b5d638 https://www.encodeproject.org/files/ENCFF164AVP/@@download/ENCFF164AVP.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF720MSK bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF851OMU 5278336 ENCODE Processing Pipeline f7e369c1ef6322eb8a5914d6b9f6a4bc https://www.encodeproject.org/files/ENCFF720MSK/@@download/ENCFF720MSK.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF971XWG bed narrowPeak conservative idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF256UTK, ENCFF720MSK, ENCFF814AHA 92121 ENCODE Processing Pipeline c9c9f82bdc66bcef396d056fb396614d https://www.encodeproject.org/files/ENCFF971XWG/@@download/ENCFF971XWG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF057KCR bigBed narrowPeak conservative idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF971XWG 199486 ENCODE Processing Pipeline c0d17a8e005f5dbf6c84dd0fe794269b https://www.encodeproject.org/files/ENCFF057KCR/@@download/ENCFF057KCR.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF256UTK bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF616BTZ 6125036 ENCODE Processing Pipeline f2736f9429eb78e9bc837e77e6f79815 https://www.encodeproject.org/files/ENCFF256UTK/@@download/ENCFF256UTK.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF653VQI bigBed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF814AHA 13543676 ENCODE Processing Pipeline 59ee2091d83bf346c5f70646b705ff0a https://www.encodeproject.org/files/ENCFF653VQI/@@download/ENCFF653VQI.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF814AHA bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF616BTZ, ENCFF851OMU 6598559 ENCODE Processing Pipeline b7a8c964ad238408e35f13e8437624d6 https://www.encodeproject.org/files/ENCFF814AHA/@@download/ENCFF814AHA.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF925VUE bigBed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF256UTK 13458753 ENCODE Processing Pipeline a878287a5b964d367b62ad253d06eaa9 https://www.encodeproject.org/files/ENCFF925VUE/@@download/ENCFF925VUE.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF747DSG bigBed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF720MSK 11288076 ENCODE Processing Pipeline cd1b89abf287e11f70a2fe4870a4bd04 https://www.encodeproject.org/files/ENCFF747DSG/@@download/ENCFF747DSG.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003IPS bed narrowPeak optimal idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF256UTK, ENCFF720MSK, ENCFF814AHA 95590 ENCODE Processing Pipeline a257ff36c4713239dd04cd1b7758fa23 https://www.encodeproject.org/files/ENCFF003IPS/@@download/ENCFF003IPS.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF826PEG bigBed narrowPeak optimal idr thresholded peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF003IPS 203892 ENCODE Processing Pipeline 1dbfe6c9a4abea925075261e4b8c242e https://www.encodeproject.org/files/ENCFF826PEG/@@download/ENCFF826PEG.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF541HZR bam unfiltered alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 50 ENCFF659NRO, ENCFF807MUK, ENCFF826UNN 1853514371 ENCODE Processing Pipeline 558f6dfb068a829cf68b39040e8cfb67 https://www.encodeproject.org/files/ENCFF541HZR/@@download/ENCFF541HZR.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF467PUF bam unfiltered alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 50 ENCFF508PNU, ENCFF807MUK, ENCFF875NRZ 1845517743 ENCODE Processing Pipeline f25fddd62cd7636932a6b3c75b14ef8a https://www.encodeproject.org/files/ENCFF467PUF/@@download/ENCFF467PUF.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF508PNU fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 1 50 single-ended 894184527 Kevin White, UChicago ead4d5d51d8fe882391ad29072976d28 https://www.encodeproject.org/files/ENCFF508PNU/@@download/ENCFF508PNU.fastq.gz Illumina HiSeq 2500 /files/ENCFF959MSU/, /files/ENCFF996NMH/ released missing genetic modification characterization experiment not submitted to GEO ENCFF889JMQ fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 2 1 50 single-ended 404281692 Kevin White, UChicago 59b72914a9eb845c59b794aa3964a559 https://www.encodeproject.org/files/ENCFF889JMQ/@@download/ENCFF889JMQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF959MSU/, /files/ENCFF996NMH/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF638EBJ fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 1 1 50 single-ended 476286189 Kevin White, UChicago 7b5b2979fc535bfd4479ad8e922ebc72 https://www.encodeproject.org/files/ENCFF638EBJ/@@download/ENCFF638EBJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF959MSU/, /files/ENCFF996NMH/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF826UNN fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 1 50 single-ended 867978981 Kevin White, UChicago 94ae8006b9697f9a13dc2385c69cff1d https://www.encodeproject.org/files/ENCFF826UNN/@@download/ENCFF826UNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF959MSU/, /files/ENCFF996NMH/ released missing genetic modification characterization experiment not submitted to GEO ENCFF415IKH fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 1 1 50 single-ended 548613964 Kevin White, UChicago 490054312ff8573649b49bd74efffa4b https://www.encodeproject.org/files/ENCFF415IKH/@@download/ENCFF415IKH.fastq.gz Illumina HiSeq 2500 /files/ENCFF959MSU/, /files/ENCFF996NMH/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF875NRZ fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 1 50 single-ended 872370273 Kevin White, UChicago c4b48c82047713b3106417f70f301dd2 https://www.encodeproject.org/files/ENCFF875NRZ/@@download/ENCFF875NRZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF959MSU/, /files/ENCFF996NMH/ released missing genetic modification characterization experiment not submitted to GEO ENCFF653DBT fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 2 1 50 single-ended 369770306 Kevin White, UChicago ccaa42e1d84a4a862b67f95175f3f3d3 https://www.encodeproject.org/files/ENCFF653DBT/@@download/ENCFF653DBT.fastq.gz Illumina HiSeq 2500 /files/ENCFF959MSU/, /files/ENCFF996NMH/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF659NRO fastq reads ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 1 50 single-ended 981273838 Kevin White, UChicago 45fca901921fe0e46375421407e2c83e https://www.encodeproject.org/files/ENCFF659NRO/@@download/ENCFF659NRO.fastq.gz Illumina HiSeq 2500 /files/ENCFF959MSU/, /files/ENCFF996NMH/ released missing genetic modification characterization experiment not submitted to GEO ENCFF963KBX bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 2 ENCFF653DBT, ENCFF807MUK, ENCFF889JMQ 567364108 ENCODE Processing Pipeline d57957e1c676b1ffba15752fdfca6c60 https://www.encodeproject.org/files/ENCFF963KBX/@@download/ENCFF963KBX.bam hg19 archived missing genetic modification characterization experiment not submitted to GEO ENCFF675RQO bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF659NRO, ENCFF807MUK, ENCFF826UNN 1370815006 ENCODE Processing Pipeline ae57596e4cb297b40b72bf99b1a69bbf https://www.encodeproject.org/files/ENCFF675RQO/@@download/ENCFF675RQO.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF357ANO bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 1 ENCFF415IKH, ENCFF638EBJ, ENCFF807MUK 824058912 ENCODE Processing Pipeline f8107e0ca80f359a21b3c12517d87d28 https://www.encodeproject.org/files/ENCFF357ANO/@@download/ENCFF357ANO.bam hg19 archived missing genetic modification characterization experiment not submitted to GEO ENCFF173TQI bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF508PNU, ENCFF807MUK, ENCFF875NRZ 1418177580 ENCODE Processing Pipeline d6e31c3d3aff86117f0716eb2a14a1bf https://www.encodeproject.org/files/ENCFF173TQI/@@download/ENCFF173TQI.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF157KSP bam unfiltered alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 1 50 ENCFF415IKH, ENCFF638EBJ, ENCFF643CGH 1092055563 ENCODE Processing Pipeline f1f3722683acec91819df573f06d7753 https://www.encodeproject.org/files/ENCFF157KSP/@@download/ENCFF157KSP.bam GRCh38 archived missing genetic modification characterization experiment not submitted to GEO ENCFF362OMG bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 1 50 ENCFF415IKH, ENCFF638EBJ, ENCFF643CGH 823614017 ENCODE Processing Pipeline d0347b06e6ebc06445165b3682a3f4f2 https://www.encodeproject.org/files/ENCFF362OMG/@@download/ENCFF362OMG.bam GRCh38 archived missing genetic modification characterization experiment not submitted to GEO ENCFF456GLV bam unfiltered alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 2 50 ENCFF643CGH, ENCFF653DBT, ENCFF889JMQ 800021155 ENCODE Processing Pipeline d9cc1fe98829138cffb6397af0e3ee6b https://www.encodeproject.org/files/ENCFF456GLV/@@download/ENCFF456GLV.bam GRCh38 archived missing genetic modification characterization experiment not submitted to GEO ENCFF295BFN bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 2 50 ENCFF643CGH, ENCFF653DBT, ENCFF889JMQ 566981592 ENCODE Processing Pipeline 663dd5ab440ce98a736e86376e61a10c https://www.encodeproject.org/files/ENCFF295BFN/@@download/ENCFF295BFN.bam GRCh38 archived missing genetic modification characterization experiment not submitted to GEO ENCFF299ZTR bam unfiltered alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 50 ENCFF643CGH, ENCFF659NRO, ENCFF826UNN 1858523177 ENCODE Processing Pipeline 752d587a19ccb9ace223e0efbba62469 https://www.encodeproject.org/files/ENCFF299ZTR/@@download/ENCFF299ZTR.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF540HZD bam unfiltered alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 50 ENCFF508PNU, ENCFF643CGH, ENCFF875NRZ 1850743456 ENCODE Processing Pipeline a3a3cb889a0fa077ddca4f9aa72945e9 https://www.encodeproject.org/files/ENCFF540HZD/@@download/ENCFF540HZD.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF698KWQ bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 50 ENCFF508PNU, ENCFF643CGH, ENCFF875NRZ 1417526938 ENCODE Processing Pipeline 855395168f3337357e5b00bdf5082aea https://www.encodeproject.org/files/ENCFF698KWQ/@@download/ENCFF698KWQ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF046PED bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 50 ENCFF643CGH, ENCFF659NRO, ENCFF826UNN 1370045759 ENCODE Processing Pipeline e373e2c5aab07e6cc74b41a13cd5246c https://www.encodeproject.org/files/ENCFF046PED/@@download/ENCFF046PED.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF700USA bigWig signal p-value ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF171NJW, ENCFF173TQI 591114363 ENCODE Processing Pipeline 15e197d1c2919eb3b019f8179c85fb8d https://www.encodeproject.org/files/ENCFF700USA/@@download/ENCFF700USA.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF176ECR bigWig fold change over control ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF171NJW, ENCFF173TQI 700462489 ENCODE Processing Pipeline 49bfcbef15c47e3b2dda7935cb0d18ad https://www.encodeproject.org/files/ENCFF176ECR/@@download/ENCFF176ECR.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF769NEX bigWig signal p-value ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF171NJW, ENCFF675RQO 685851220 ENCODE Processing Pipeline 44b13a60d4c8455c5143848c65503ace https://www.encodeproject.org/files/ENCFF769NEX/@@download/ENCFF769NEX.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF025ZAO bigWig signal p-value ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF171NJW, ENCFF173TQI, ENCFF675RQO 735513635 ENCODE Processing Pipeline 0b8a0926d05afcdb780df8074fb1aa80 https://www.encodeproject.org/files/ENCFF025ZAO/@@download/ENCFF025ZAO.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF037MEA bigWig fold change over control ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF171NJW, ENCFF675RQO 691376557 ENCODE Processing Pipeline b267dbce722d35317ccdbe76e89dfced https://www.encodeproject.org/files/ENCFF037MEA/@@download/ENCFF037MEA.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF724WTJ bigWig fold change over control ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF171NJW, ENCFF173TQI, ENCFF675RQO 1034749177 ENCODE Processing Pipeline 71617c0b75aeb1c1c786c03865d01b60 https://www.encodeproject.org/files/ENCFF724WTJ/@@download/ENCFF724WTJ.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF568CWO bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF171NJW, ENCFF173TQI 6811528 ENCODE Processing Pipeline 394c2889bba7b199b817b99f453007ad https://www.encodeproject.org/files/ENCFF568CWO/@@download/ENCFF568CWO.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF531FSD bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF171NJW, ENCFF675RQO 6707104 ENCODE Processing Pipeline a7ea640e0c700fecb19d3643ff22f845 https://www.encodeproject.org/files/ENCFF531FSD/@@download/ENCFF531FSD.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF349KFP bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF171NJW, ENCFF173TQI, ENCFF675RQO 7099164 ENCODE Processing Pipeline 2d7be435e63707931b45a1add736ed39 https://www.encodeproject.org/files/ENCFF349KFP/@@download/ENCFF349KFP.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF726QIE bigBed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF568CWO 12838807 ENCODE Processing Pipeline a14c4d576793c53ad7915eafb63eacf1 https://www.encodeproject.org/files/ENCFF726QIE/@@download/ENCFF726QIE.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF085IYN bigBed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF531FSD 12943859 ENCODE Processing Pipeline 999816944646964532bb623702ea97bb https://www.encodeproject.org/files/ENCFF085IYN/@@download/ENCFF085IYN.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF189NDY bigBed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF349KFP 12860083 ENCODE Processing Pipeline f42e6332f3a463680c2d2d1e19bb5323 https://www.encodeproject.org/files/ENCFF189NDY/@@download/ENCFF189NDY.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF053OWV bed narrowPeak conservative idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF001TDO, ENCFF349KFP, ENCFF531FSD, ENCFF568CWO 757031 ENCODE Processing Pipeline 58645881530220620efb7100ea18d127 https://www.encodeproject.org/files/ENCFF053OWV/@@download/ENCFF053OWV.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF148ZOP bigBed narrowPeak conservative idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF053OWV 1591506 ENCODE Processing Pipeline af792f6fd47c6451f55dc9bc7a6ecc4d https://www.encodeproject.org/files/ENCFF148ZOP/@@download/ENCFF148ZOP.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF186QUP bed narrowPeak optimal idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF001TDO, ENCFF349KFP, ENCFF531FSD, ENCFF568CWO 824002 ENCODE Processing Pipeline e8579645ecac6889f007fbc6d51bd658 https://www.encodeproject.org/files/ENCFF186QUP/@@download/ENCFF186QUP.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF381CPB bigBed narrowPeak optimal idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF186QUP 1714375 ENCODE Processing Pipeline 4fd46ea7c4b2d43cd0f1801c2f717334 https://www.encodeproject.org/files/ENCFF381CPB/@@download/ENCFF381CPB.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF612HIX bigWig signal p-value ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF256EBS, ENCFF698KWQ 750738477 ENCODE Processing Pipeline 1bc43fb19f607a41667cea693792d8a8 https://www.encodeproject.org/files/ENCFF612HIX/@@download/ENCFF612HIX.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF640VML bigWig fold change over control ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF256EBS, ENCFF698KWQ 693941112 ENCODE Processing Pipeline 8472e1952aa8c52a31166fb4181b8f43 https://www.encodeproject.org/files/ENCFF640VML/@@download/ENCFF640VML.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF790NDB bigWig signal p-value ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF046PED, ENCFF256EBS 555949974 ENCODE Processing Pipeline 9f574a5b4de0e0da7f51d0786e4827ad https://www.encodeproject.org/files/ENCFF790NDB/@@download/ENCFF790NDB.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF311KGV bigWig signal p-value ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF046PED, ENCFF256EBS, ENCFF698KWQ 741625943 ENCODE Processing Pipeline 8e418640e24c3525b47a40db942b0a47 https://www.encodeproject.org/files/ENCFF311KGV/@@download/ENCFF311KGV.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF356EMP bigWig fold change over control ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF046PED, ENCFF256EBS 676125914 ENCODE Processing Pipeline 4d8a4acbccd3d412161cc089b13d583d https://www.encodeproject.org/files/ENCFF356EMP/@@download/ENCFF356EMP.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF550FGL bigWig fold change over control ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF046PED, ENCFF256EBS, ENCFF698KWQ 1044594673 ENCODE Processing Pipeline bce81f5ddb70dd6ee6d3d9fb7971f065 https://www.encodeproject.org/files/ENCFF550FGL/@@download/ENCFF550FGL.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF268SZL bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF256EBS, ENCFF698KWQ 6813367 ENCODE Processing Pipeline 33705dd51cec05ad3d20f1935799f11a https://www.encodeproject.org/files/ENCFF268SZL/@@download/ENCFF268SZL.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF208ETE bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF046PED, ENCFF256EBS 6703217 ENCODE Processing Pipeline 36563f48ebdea2669fe3e8a69738a63d https://www.encodeproject.org/files/ENCFF208ETE/@@download/ENCFF208ETE.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF357PIL bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF046PED, ENCFF256EBS, ENCFF698KWQ 7099334 ENCODE Processing Pipeline b6313021f621ed4f1d3a0f73614b8c3e https://www.encodeproject.org/files/ENCFF357PIL/@@download/ENCFF357PIL.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF988AXA bigBed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF268SZL 12850947 ENCODE Processing Pipeline 6c21049c286df0463d4a3b6e66a966fb https://www.encodeproject.org/files/ENCFF988AXA/@@download/ENCFF988AXA.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF870VXK bigBed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF208ETE 12944697 ENCODE Processing Pipeline efa828e4feb56538aba285b0a2a6dcf4 https://www.encodeproject.org/files/ENCFF870VXK/@@download/ENCFF870VXK.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF524ZJR bigBed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF357PIL 12865262 ENCODE Processing Pipeline 66f92b5608a9d8a50eb3988c1dcccb42 https://www.encodeproject.org/files/ENCFF524ZJR/@@download/ENCFF524ZJR.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF682QKR bed narrowPeak conservative idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF208ETE, ENCFF268SZL, ENCFF357PIL, ENCFF419RSJ 759785 ENCODE Processing Pipeline 0b307a05384b1ce3a9602d87a8399cd2 https://www.encodeproject.org/files/ENCFF682QKR/@@download/ENCFF682QKR.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF267IPW bigBed narrowPeak conservative idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF682QKR 1596851 ENCODE Processing Pipeline 4eb1b55cddfe97141daa07557c94fc6a https://www.encodeproject.org/files/ENCFF267IPW/@@download/ENCFF267IPW.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF913CII bed narrowPeak optimal idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF208ETE, ENCFF268SZL, ENCFF357PIL, ENCFF419RSJ 810851 ENCODE Processing Pipeline 6e0a042bdeb782ce4a73d532955c7b36 https://www.encodeproject.org/files/ENCFF913CII/@@download/ENCFF913CII.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF881NLG bigBed narrowPeak optimal idr thresholded peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3, 4 ENCFF913CII 1696282 ENCODE Processing Pipeline 665247850343beaeb0921abcc821332a https://www.encodeproject.org/files/ENCFF881NLG/@@download/ENCFF881NLG.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF668SGW fastq reads ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF400DAT 2533519146 Richard Myers, HAIB 897a99925bc985511bb6ff71d9cf9b4c https://www.encodeproject.org/files/ENCFF668SGW/@@download/ENCFF668SGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF147IQP/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF400DAT fastq reads ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF668SGW 2639066955 Richard Myers, HAIB 65ceed712df4b230479ca5568b07e9e1 https://www.encodeproject.org/files/ENCFF400DAT/@@download/ENCFF400DAT.fastq.gz Illumina HiSeq 2000 /files/ENCFF920XCV/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF315PLV bam unfiltered alignments ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF400DAT, ENCFF668SGW, ENCFF807MUK 3873273045 ENCODE Processing Pipeline 0b2cc0b54b4dab35d6baa97c17b15aa2 https://www.encodeproject.org/files/ENCFF315PLV/@@download/ENCFF315PLV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF475DIE bam alignments ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF400DAT, ENCFF668SGW, ENCFF807MUK 2695214539 ENCODE Processing Pipeline a2541a9fa00351c3cc99f41dcd39a44d https://www.encodeproject.org/files/ENCFF475DIE/@@download/ENCFF475DIE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF810WVE bam unfiltered alignments ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF400DAT, ENCFF643CGH, ENCFF668SGW 3865419479 ENCODE Processing Pipeline 17559e9d8b4c93d63651fcef34d44210 https://www.encodeproject.org/files/ENCFF810WVE/@@download/ENCFF810WVE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF516ZKN bam alignments ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF400DAT, ENCFF643CGH, ENCFF668SGW 2698944814 ENCODE Processing Pipeline 3a1de7f7e06848e371ba9214dc5051c1 https://www.encodeproject.org/files/ENCFF516ZKN/@@download/ENCFF516ZKN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF204IHN bigWig fold change over control ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF475DIE, ENCFF836OQZ 876505747 ENCODE Processing Pipeline d2d6eb6a4a00f8915a8fe42a8b1357ca https://www.encodeproject.org/files/ENCFF204IHN/@@download/ENCFF204IHN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF580UPS bigWig signal p-value ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF475DIE, ENCFF836OQZ 1029722340 ENCODE Processing Pipeline 28db228997b2ae8ce794e963737fd2f5 https://www.encodeproject.org/files/ENCFF580UPS/@@download/ENCFF580UPS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF849VCH bigBed narrowPeak peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF402UYK 12953546 ENCODE Processing Pipeline 2f77b2016a7bb818221b455a051f8689 https://www.encodeproject.org/files/ENCFF849VCH/@@download/ENCFF849VCH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF402UYK bed narrowPeak peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF475DIE, ENCFF836OQZ 6636011 ENCODE Processing Pipeline f3b587fb395d44961524030474be4da7 https://www.encodeproject.org/files/ENCFF402UYK/@@download/ENCFF402UYK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF573IAI bigWig signal p-value ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF286CKM, ENCFF516ZKN 991018198 ENCODE Processing Pipeline c2551df5d55bee74b5510ebeaeda5f34 https://www.encodeproject.org/files/ENCFF573IAI/@@download/ENCFF573IAI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF226MKP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF402UYK 687343 ENCODE Processing Pipeline 2f8dba39cc17cc228df0ba4b8f29fef7 https://www.encodeproject.org/files/ENCFF226MKP/@@download/ENCFF226MKP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF487VCU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF226MKP 1300847 ENCODE Processing Pipeline d87819c9a7f8f1b189bab13c260f2313 https://www.encodeproject.org/files/ENCFF487VCU/@@download/ENCFF487VCU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF625NNB bigBed narrowPeak peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF114ZFU 13164725 ENCODE Processing Pipeline c2b0d8b24a9c9287c7c5bfb789564a19 https://www.encodeproject.org/files/ENCFF625NNB/@@download/ENCFF625NNB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF140PJT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF163OSZ 1366534 ENCODE Processing Pipeline 1612e65ed66f671d200ec74e048b1683 https://www.encodeproject.org/files/ENCFF140PJT/@@download/ENCFF140PJT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF163OSZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF114ZFU, ENCFF419RSJ 722749 ENCODE Processing Pipeline f75e6ec9a9cb5feb18ab9a6303f44207 https://www.encodeproject.org/files/ENCFF163OSZ/@@download/ENCFF163OSZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF695KSV bigWig fold change over control ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF286CKM, ENCFF516ZKN 860804520 ENCODE Processing Pipeline 4bca86b8466e9f982a1ccce8c0fc1cc1 https://www.encodeproject.org/files/ENCFF695KSV/@@download/ENCFF695KSV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF114ZFU bed narrowPeak peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF286CKM, ENCFF516ZKN 6772525 ENCODE Processing Pipeline 2fa839a6c56e22423ece80c29f7c7450 https://www.encodeproject.org/files/ENCFF114ZFU/@@download/ENCFF114ZFU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF000PVE bigBed broadPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UIU 745171 Richard Myers, HAIB 9b44bbfa5e4a4903263e8aa2766f82ef https://www.encodeproject.org/files/ENCFF000PVE/@@download/ENCFF000PVE.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000PVF bigBed broadPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UIV 654299 Richard Myers, HAIB 70d041270249c5528fe710c481eaf260 https://www.encodeproject.org/files/ENCFF000PVF/@@download/ENCFF000PVF.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000PVG bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PVK 649578891 Richard Myers, HAIB 7b53fc9f60481d34b344e149372e920c https://www.encodeproject.org/files/ENCFF000PVG/@@download/ENCFF000PVG.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000PVH bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PVP 1664921751 Richard Myers, HAIB aedc3184a53c80017c2fcd623cb87e5e https://www.encodeproject.org/files/ENCFF000PVH/@@download/ENCFF000PVH.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000PVI bigWig raw signal ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 1 19130425 Richard Myers, HAIB fb563205741c2d257413d9a4cccddfde https://www.encodeproject.org/files/ENCFF000PVI/@@download/ENCFF000PVI.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000PVJ bigWig raw signal ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 1 41701073 Richard Myers, HAIB 90819d01b4f5f7614a2b80492d0028e4 https://www.encodeproject.org/files/ENCFF000PVJ/@@download/ENCFF000PVJ.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000PVK fastq reads ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 631108244 Richard Myers, HAIB 66aa1e34163c988205b677659fccda24 https://www.encodeproject.org/files/ENCFF000PVK/@@download/ENCFF000PVK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PVT/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000PVP fastq reads ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1648674523 Richard Myers, HAIB 241a1ef2f8c789a91f2cf5c4d75b0c55 https://www.encodeproject.org/files/ENCFF000PVP/@@download/ENCFF000PVP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PVT/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001UIU bed broadPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 1 388043 Richard Myers, HAIB 79cb51019b7abb752a796efb2059d396 https://www.encodeproject.org/files/ENCFF001UIU/@@download/ENCFF001UIU.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001UIV bed broadPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 1 359980 Richard Myers, HAIB 8ce4c0a4a0af2641815187c488fff2ba https://www.encodeproject.org/files/ENCFF001UIV/@@download/ENCFF001UIV.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF002CLM bed narrowPeak optimal idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 416360 ENCODE Consortium Analysis Working Group f781dd9a868d691299bcc5c5009c691b https://www.encodeproject.org/files/ENCFF002CLM/@@download/ENCFF002CLM.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF141SDE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CLM 1111177 ENCODE Consortium 791573f833d1bd3c14ce61f09989317a https://www.encodeproject.org/files/ENCFF141SDE/@@download/ENCFF141SDE.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF896AXB bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVK, ENCFF643CGH 465533379 ENCODE Processing Pipeline 5db78ec69b91c308242b4c93eb00b2f0 https://www.encodeproject.org/files/ENCFF896AXB/@@download/ENCFF896AXB.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF692VEL bam unfiltered alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVK, ENCFF643CGH 793661675 ENCODE Processing Pipeline 468bf67808ce5996fbdccce0ff656a55 https://www.encodeproject.org/files/ENCFF692VEL/@@download/ENCFF692VEL.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF224KDN bam unfiltered alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVP, ENCFF643CGH 1811000164 ENCODE Processing Pipeline a6b4d7b461a9573051870f639585e24b https://www.encodeproject.org/files/ENCFF224KDN/@@download/ENCFF224KDN.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF571VGS bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVP, ENCFF643CGH 1192093443 ENCODE Processing Pipeline 3cbdbd6e426a456d620f4e620be57131 https://www.encodeproject.org/files/ENCFF571VGS/@@download/ENCFF571VGS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF146JAB bam unfiltered alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVK, ENCFF807MUK 792707591 ENCODE Processing Pipeline 9c04c23b7f242a07ac8c5be75d52262c https://www.encodeproject.org/files/ENCFF146JAB/@@download/ENCFF146JAB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF095RWQ bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVK, ENCFF807MUK 465573513 ENCODE Processing Pipeline dd7ff5f81c2983813c6787d889a56f28 https://www.encodeproject.org/files/ENCFF095RWQ/@@download/ENCFF095RWQ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF942KQL bam unfiltered alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVP, ENCFF807MUK 1807816023 ENCODE Processing Pipeline 6415a83b2037f5619f50cc02e233064c https://www.encodeproject.org/files/ENCFF942KQL/@@download/ENCFF942KQL.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF089QXR bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVP, ENCFF807MUK 1191932553 ENCODE Processing Pipeline deec354e9c65f4ee1184f465ab3f10e8 https://www.encodeproject.org/files/ENCFF089QXR/@@download/ENCFF089QXR.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF909AQK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF082NLH 990428 ENCODE Processing Pipeline 70dea097200c876f652a39e37229f98d https://www.encodeproject.org/files/ENCFF909AQK/@@download/ENCFF909AQK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF636DMA bigWig signal p-value ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF095RWQ, ENCFF234MAA 256587554 ENCODE Processing Pipeline 7130704bb1bcd8b2e08f86d8d637497e https://www.encodeproject.org/files/ENCFF636DMA/@@download/ENCFF636DMA.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF610EUL bigWig fold change over control ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF095RWQ, ENCFF234MAA 181774610 ENCODE Processing Pipeline ae0290d9f83d8935f3d3ac5760b98815 https://www.encodeproject.org/files/ENCFF610EUL/@@download/ENCFF610EUL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF774VSC bigWig signal p-value ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF089QXR, ENCFF234MAA 300511848 ENCODE Processing Pipeline 4402ceabf18c85a4a7d3c8b4b5eb7fa6 https://www.encodeproject.org/files/ENCFF774VSC/@@download/ENCFF774VSC.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF704JVW bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF089QXR, ENCFF234MAA 6504853 ENCODE Processing Pipeline b407c5599965ac2ceab7fce2ba9086db https://www.encodeproject.org/files/ENCFF704JVW/@@download/ENCFF704JVW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF143HDP bigBed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF510UHF 12522595 ENCODE Processing Pipeline 98c9bbc2d40d1c93dc52da4855d11f3e https://www.encodeproject.org/files/ENCFF143HDP/@@download/ENCFF143HDP.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF082NLH bed narrowPeak conservative idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF297ZIE, ENCFF510UHF, ENCFF704JVW 423008 ENCODE Processing Pipeline 9f23bb76aec2a77aaa361c67c1f93159 https://www.encodeproject.org/files/ENCFF082NLH/@@download/ENCFF082NLH.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF768HRH bigWig fold change over control ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF089QXR, ENCFF095RWQ, ENCFF234MAA 544055150 ENCODE Processing Pipeline 1d29ffb703448d3d62afde6462095aa9 https://www.encodeproject.org/files/ENCFF768HRH/@@download/ENCFF768HRH.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF954UNK bigBed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF297ZIE 12188270 ENCODE Processing Pipeline 242fe4091ec3b95829ae120e43e0d605 https://www.encodeproject.org/files/ENCFF954UNK/@@download/ENCFF954UNK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF628OGY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF876VZQ 1130022 ENCODE Processing Pipeline b19e38c51ee2f6fe08b16a10888498fa https://www.encodeproject.org/files/ENCFF628OGY/@@download/ENCFF628OGY.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF681MMD bigWig signal p-value ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF089QXR, ENCFF095RWQ, ENCFF234MAA 278275734 ENCODE Processing Pipeline 8bffce2dc2568d2148b462f876e2f17a https://www.encodeproject.org/files/ENCFF681MMD/@@download/ENCFF681MMD.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF423ZWY bigWig fold change over control ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF089QXR, ENCFF234MAA 455268879 ENCODE Processing Pipeline 473a5186989e9ed57adb5a8ed5aa3716 https://www.encodeproject.org/files/ENCFF423ZWY/@@download/ENCFF423ZWY.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF297ZIE bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF095RWQ, ENCFF234MAA 5357565 ENCODE Processing Pipeline 9b20dfb24dee94dbd714fca7f7b103d1 https://www.encodeproject.org/files/ENCFF297ZIE/@@download/ENCFF297ZIE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF510UHF bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF089QXR, ENCFF095RWQ, ENCFF234MAA 6721534 ENCODE Processing Pipeline 31a75333679d3806751d381b31db545a https://www.encodeproject.org/files/ENCFF510UHF/@@download/ENCFF510UHF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF859BUG bigBed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF704JVW 12641240 ENCODE Processing Pipeline 565352b221bade538f3458719ad92c09 https://www.encodeproject.org/files/ENCFF859BUG/@@download/ENCFF859BUG.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF876VZQ bed narrowPeak optimal idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF297ZIE, ENCFF510UHF, ENCFF704JVW 503748 ENCODE Processing Pipeline 701ca68b5efae47fa8d14458cd27fdf3 https://www.encodeproject.org/files/ENCFF876VZQ/@@download/ENCFF876VZQ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF138ANH bigWig fold change over control ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF166HHP, ENCFF896AXB 181373983 ENCODE Processing Pipeline 1fa1556b93abb158c6c1c29f94c8a918 https://www.encodeproject.org/files/ENCFF138ANH/@@download/ENCFF138ANH.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF166KIG bigWig fold change over control ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF166HHP, ENCFF571VGS, ENCFF896AXB 541954228 ENCODE Processing Pipeline 2fc3f5deccc32179a0cf9d3a3e0868a2 https://www.encodeproject.org/files/ENCFF166KIG/@@download/ENCFF166KIG.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF791OTS bed narrowPeak conservative idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF024IBB, ENCFF138NNW, ENCFF419RSJ, ENCFF482VYS 424148 ENCODE Processing Pipeline 047cad38c38737ac01b5cf01be26700c https://www.encodeproject.org/files/ENCFF791OTS/@@download/ENCFF791OTS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF055PUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF387VGY 1146251 ENCODE Processing Pipeline 6c5625b722459d6b4beb880a74a63557 https://www.encodeproject.org/files/ENCFF055PUJ/@@download/ENCFF055PUJ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF677NVH bigWig signal p-value ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF166HHP, ENCFF571VGS, ENCFF896AXB 278255169 ENCODE Processing Pipeline b5f58008fb205ac6bcb1273e21268efc https://www.encodeproject.org/files/ENCFF677NVH/@@download/ENCFF677NVH.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF171AMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF791OTS 992590 ENCODE Processing Pipeline 8cc452d7c47b1607658ddcb03cee5a42 https://www.encodeproject.org/files/ENCFF171AMQ/@@download/ENCFF171AMQ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF387VGY bed narrowPeak optimal idr thresholded peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF024IBB, ENCFF138NNW, ENCFF419RSJ, ENCFF482VYS 512541 ENCODE Processing Pipeline 9de86a057533eb09074c6cda76725ddf https://www.encodeproject.org/files/ENCFF387VGY/@@download/ENCFF387VGY.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF024IBB bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF166HHP, ENCFF896AXB 5345449 ENCODE Processing Pipeline e369a44096d9b4a18d9dbd87909c39a9 https://www.encodeproject.org/files/ENCFF024IBB/@@download/ENCFF024IBB.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF186IYS bigBed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF482VYS 12644989 ENCODE Processing Pipeline c8e3450fdff43b16f2844b42bd21b4a8 https://www.encodeproject.org/files/ENCFF186IYS/@@download/ENCFF186IYS.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF246TSI bigBed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF138NNW 12522822 ENCODE Processing Pipeline 45d26c7fef7cf855319268e75a80cf97 https://www.encodeproject.org/files/ENCFF246TSI/@@download/ENCFF246TSI.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF448OLG bigWig signal p-value ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF166HHP, ENCFF896AXB 286008086 ENCODE Processing Pipeline ad51f0f1f9d5e0fc0303a0bedc92560a https://www.encodeproject.org/files/ENCFF448OLG/@@download/ENCFF448OLG.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF459TKR bigWig signal p-value ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF166HHP, ENCFF571VGS 301380118 ENCODE Processing Pipeline 1d723bce4f7d10a8c5d622a2a10fb2c1 https://www.encodeproject.org/files/ENCFF459TKR/@@download/ENCFF459TKR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF035RNG bigWig fold change over control ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF166HHP, ENCFF571VGS 456251463 ENCODE Processing Pipeline 6ae6ddd1ce4a455291c99867b44b5cc7 https://www.encodeproject.org/files/ENCFF035RNG/@@download/ENCFF035RNG.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF482VYS bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF166HHP, ENCFF571VGS 6509652 ENCODE Processing Pipeline cc9b645a23d1c0bb5e412a1306bb3843 https://www.encodeproject.org/files/ENCFF482VYS/@@download/ENCFF482VYS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF138NNW bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF166HHP, ENCFF571VGS, ENCFF896AXB 6721551 ENCODE Processing Pipeline 1a5898aae46f24264cb0e76006108c16 https://www.encodeproject.org/files/ENCFF138NNW/@@download/ENCFF138NNW.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF511EVJ bigBed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF024IBB 12200995 ENCODE Processing Pipeline c1d6817e62de3afbf0fb43b9b17d026c https://www.encodeproject.org/files/ENCFF511EVJ/@@download/ENCFF511EVJ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000XQF bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XQP 366888331 Michael Snyder, Stanford 08a63b4a85f5d7ade55199831b006434 https://www.encodeproject.org/files/ENCFF000XQF/@@download/ENCFF000XQF.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQG bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKA 1326760 Michael Snyder, Stanford 836c424bb48ba6278e0c16d9474a0efb https://www.encodeproject.org/files/ENCFF000XQG/@@download/ENCFF000XQG.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQH bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XQQ 450230985 Michael Snyder, Stanford 968eec1026b4b0cf2ef986a9cbb223b4 https://www.encodeproject.org/files/ENCFF000XQH/@@download/ENCFF000XQH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQI bigWig signal ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 333176212 Michael Snyder, Stanford 76d2f5dc0320826ed81c918065dc8d9a https://www.encodeproject.org/files/ENCFF000XQI/@@download/ENCFF000XQI.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XQP fastq reads ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 657084800 Michael Snyder, Stanford 55b58f9e1b597ef800234586ec870f81 https://www.encodeproject.org/files/ENCFF000XQP/@@download/ENCFF000XQP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQQ fastq reads ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 919594276 Michael Snyder, Stanford 9d753e537f10555f4e7c248b365a2939 https://www.encodeproject.org/files/ENCFF000XQQ/@@download/ENCFF000XQQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKA bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 591035 Michael Snyder, Stanford 8e00dae2b8920f4676c377f2352eead6 https://www.encodeproject.org/files/ENCFF001VKA/@@download/ENCFF001VKA.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CTX bed narrowPeak optimal idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 132999 ENCODE Consortium Analysis Working Group b8b76f23f457c1d4165f9dd8d5a28365 https://www.encodeproject.org/files/ENCFF002CTX/@@download/ENCFF002CTX.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF210IAE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTX 407258 ENCODE Consortium 93e5c451a9d0580e6f26ea40e40db15f https://www.encodeproject.org/files/ENCFF210IAE/@@download/ENCFF210IAE.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF528KZI bam unfiltered alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQP, ENCFF643CGH 833988397 ENCODE Processing Pipeline b28903c7e77972a9f491a186c2e2a480 https://www.encodeproject.org/files/ENCFF528KZI/@@download/ENCFF528KZI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF358QPW bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQP, ENCFF643CGH 560585913 ENCODE Processing Pipeline b2ff5f7db710158369c7c094fc2eff0d https://www.encodeproject.org/files/ENCFF358QPW/@@download/ENCFF358QPW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF175XZF bam unfiltered alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQQ, ENCFF643CGH 1131281475 ENCODE Processing Pipeline cf5eca306a853768541e3ed5c394aea1 https://www.encodeproject.org/files/ENCFF175XZF/@@download/ENCFF175XZF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF291LSV bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQQ, ENCFF643CGH 757956051 ENCODE Processing Pipeline 590c19ed667f3009ce9e051df1115a06 https://www.encodeproject.org/files/ENCFF291LSV/@@download/ENCFF291LSV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF633NXO bam unfiltered alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQP, ENCFF807MUK 830139366 ENCODE Processing Pipeline 569e2ec69806d5b0e991e566d807592f https://www.encodeproject.org/files/ENCFF633NXO/@@download/ENCFF633NXO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF669VIL bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQP, ENCFF807MUK 560908136 ENCODE Processing Pipeline 9722e38846acd2ff72ee84053039a502 https://www.encodeproject.org/files/ENCFF669VIL/@@download/ENCFF669VIL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF188LZR bam unfiltered alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQQ, ENCFF807MUK 1126252832 ENCODE Processing Pipeline a5450bcd51b5873b8cd39b6a54c6b785 https://www.encodeproject.org/files/ENCFF188LZR/@@download/ENCFF188LZR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF154IGF bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQQ, ENCFF807MUK 758279725 ENCODE Processing Pipeline c3fb83f8ebe687a9c9120dc33303ddab https://www.encodeproject.org/files/ENCFF154IGF/@@download/ENCFF154IGF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF129COD bigWig signal p-value ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF358QPW 578971721 ENCODE Processing Pipeline 0b3399b4ba7df9541d6381f0df7b69e9 https://www.encodeproject.org/files/ENCFF129COD/@@download/ENCFF129COD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF954CCV bigWig signal p-value ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF291LSV 524687675 ENCODE Processing Pipeline 5f8b711e89125f11c5334c20ae8fa1b1 https://www.encodeproject.org/files/ENCFF954CCV/@@download/ENCFF954CCV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF391TIC bigWig signal p-value ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF291LSV, ENCFF358QPW 699942876 ENCODE Processing Pipeline a0c187218842d4ae2bbd27448f6ff109 https://www.encodeproject.org/files/ENCFF391TIC/@@download/ENCFF391TIC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF445DRT bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF291LSV, ENCFF358QPW 5787251 ENCODE Processing Pipeline 4f77346eb2ebc7dd1560bf0d5fb31f14 https://www.encodeproject.org/files/ENCFF445DRT/@@download/ENCFF445DRT.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF951CPD bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF608CKR 10714314 ENCODE Processing Pipeline 367f657b6a5ab1a7c188370575d7712b https://www.encodeproject.org/files/ENCFF951CPD/@@download/ENCFF951CPD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF860RIC bigWig fold change over control ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF291LSV 430439532 ENCODE Processing Pipeline a06b111c0643889645575f25a70ab336 https://www.encodeproject.org/files/ENCFF860RIC/@@download/ENCFF860RIC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF154SOY bigWig fold change over control ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF358QPW 345841919 ENCODE Processing Pipeline 65e8a08c0e623def755dbf68f7a47e9b https://www.encodeproject.org/files/ENCFF154SOY/@@download/ENCFF154SOY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF608CKR bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF358QPW 4602370 ENCODE Processing Pipeline 2408b46500204edd1c8285f2077a6fe0 https://www.encodeproject.org/files/ENCFF608CKR/@@download/ENCFF608CKR.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF053SUW bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF445DRT 13425404 ENCODE Processing Pipeline 0d2ed761e0fd31f303a4d6ca9032abc4 https://www.encodeproject.org/files/ENCFF053SUW/@@download/ENCFF053SUW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF369TDR bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF291LSV 5026852 ENCODE Processing Pipeline 9802d793bc1e6a1961b1cd2c6bb8bcb1 https://www.encodeproject.org/files/ENCFF369TDR/@@download/ENCFF369TDR.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818QWN bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF369TDR 10994712 ENCODE Processing Pipeline 1c6bf0b44fea185008f8ccd29b506a56 https://www.encodeproject.org/files/ENCFF818QWN/@@download/ENCFF818QWN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF565DTA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF902EMG 289517 ENCODE Processing Pipeline 06dfc85b4214a584afe73af2e0687e26 https://www.encodeproject.org/files/ENCFF565DTA/@@download/ENCFF565DTA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF181XMM bed narrowPeak optimal idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF369TDR, ENCFF419RSJ, ENCFF445DRT, ENCFF608CKR 127536 ENCODE Processing Pipeline 236727a8f0c59b684bc07d8ff7c9fd9e https://www.encodeproject.org/files/ENCFF181XMM/@@download/ENCFF181XMM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138VIL bigWig fold change over control ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF291LSV, ENCFF358QPW 662043352 ENCODE Processing Pipeline 23e856c699e3333289532c86f8bbd05c https://www.encodeproject.org/files/ENCFF138VIL/@@download/ENCFF138VIL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF902EMG bed narrowPeak conservative idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF369TDR, ENCFF419RSJ, ENCFF445DRT, ENCFF608CKR 116806 ENCODE Processing Pipeline 838c4f000e56261b27bc500905c337e2 https://www.encodeproject.org/files/ENCFF902EMG/@@download/ENCFF902EMG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF162OFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF181XMM 307135 ENCODE Processing Pipeline 7310299fcbb16c452a1aa5c5ca8ca721 https://www.encodeproject.org/files/ENCFF162OFN/@@download/ENCFF162OFN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF753YHA bigWig fold change over control ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF154IGF 431161486 ENCODE Processing Pipeline da379c7c0530cce20eb3304fb7f6ebe1 https://www.encodeproject.org/files/ENCFF753YHA/@@download/ENCFF753YHA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228GBX bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF669VIL 4603907 ENCODE Processing Pipeline 6b29761c533a6ca6fd92ee01b41df67d https://www.encodeproject.org/files/ENCFF228GBX/@@download/ENCFF228GBX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF978TDU bigWig fold change over control ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF669VIL 354905648 ENCODE Processing Pipeline d4464a50728c71faa112977e97cbfcac https://www.encodeproject.org/files/ENCFF978TDU/@@download/ENCFF978TDU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF966QLK bigWig fold change over control ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF154IGF, ENCFF669VIL 658870057 ENCODE Processing Pipeline a5293f05ee972f6182a7f7d4977057aa https://www.encodeproject.org/files/ENCFF966QLK/@@download/ENCFF966QLK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF587SYC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF553QDJ 288221 ENCODE Processing Pipeline 83c91eb96ee7b231d840236600e6caeb https://www.encodeproject.org/files/ENCFF587SYC/@@download/ENCFF587SYC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427GXI bigWig signal p-value ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF154IGF, ENCFF669VIL 702184011 ENCODE Processing Pipeline 826a72836abd216de0333e5162bdcf25 https://www.encodeproject.org/files/ENCFF427GXI/@@download/ENCFF427GXI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF624UAC bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF154IGF 5027352 ENCODE Processing Pipeline b25430a0729029142608b20b8153f273 https://www.encodeproject.org/files/ENCFF624UAC/@@download/ENCFF624UAC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF659YGJ bigWig signal p-value ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF154IGF 518737136 ENCODE Processing Pipeline 9f3276973199c731deb74cb2c9743fa3 https://www.encodeproject.org/files/ENCFF659YGJ/@@download/ENCFF659YGJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF902EOS bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF611GBW 13424559 ENCODE Processing Pipeline ab628e374bb717ad2410dbc5390b35b7 https://www.encodeproject.org/files/ENCFF902EOS/@@download/ENCFF902EOS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF447TLK bigWig signal p-value ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF669VIL 579713635 ENCODE Processing Pipeline 59d09fdde4d4edf6fbde4ae480d638c2 https://www.encodeproject.org/files/ENCFF447TLK/@@download/ENCFF447TLK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF567BMG bed narrowPeak optimal idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF228GBX, ENCFF611GBW, ENCFF624UAC 132344 ENCODE Processing Pipeline 3a5a75bbc4d3f8638891b2d041c1a944 https://www.encodeproject.org/files/ENCFF567BMG/@@download/ENCFF567BMG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF949FKD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF567BMG 313056 ENCODE Processing Pipeline 8b25cb34e2beaeb6f81b58258ca5deee https://www.encodeproject.org/files/ENCFF949FKD/@@download/ENCFF949FKD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611GBW bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF154IGF, ENCFF669VIL 5789361 ENCODE Processing Pipeline 8b7314e3a4ae9a665b1878a44ea41089 https://www.encodeproject.org/files/ENCFF611GBW/@@download/ENCFF611GBW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF733KZL bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF228GBX 10708493 ENCODE Processing Pipeline 6dfad130bdbb3e011845f5a890ce7a0f https://www.encodeproject.org/files/ENCFF733KZL/@@download/ENCFF733KZL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF531TKO bigBed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF624UAC 10996520 ENCODE Processing Pipeline 5b653b0b929fb2ca2ad2559ad20dcce5 https://www.encodeproject.org/files/ENCFF531TKO/@@download/ENCFF531TKO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF553QDJ bed narrowPeak conservative idr thresholded peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF228GBX, ENCFF611GBW, ENCFF624UAC 116268 ENCODE Processing Pipeline 4116d809aafc24f35b0052c6f4cd0fac https://www.encodeproject.org/files/ENCFF553QDJ/@@download/ENCFF553QDJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF871VOL fastq reads ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 777939260 Xiang-Dong Fu, UCSD 12b635724201078f844bfa6603bd8035 SRA:SRR6213680 https://www.encodeproject.org/files/ENCFF871VOL/@@download/ENCFF871VOL.fastq.gz Illumina HiSeq 2500 /files/ENCFF025UQF/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF582GZQ fastq reads ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 897154744 Xiang-Dong Fu, UCSD ed7b4cbb260bb9da2855375a3a2d783d SRA:SRR6213679 https://www.encodeproject.org/files/ENCFF582GZQ/@@download/ENCFF582GZQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF004KLH bam unfiltered alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF871VOL 999829234 ENCODE Processing Pipeline 58fc1fb716aae926b7e454e17ba1f8cd https://www.encodeproject.org/files/ENCFF004KLH/@@download/ENCFF004KLH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF222PVF bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF871VOL 555315033 ENCODE Processing Pipeline 8189288619623db23dbfd5dc72a17086 https://www.encodeproject.org/files/ENCFF222PVF/@@download/ENCFF222PVF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF580PSR bam unfiltered alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF871VOL 996007491 ENCODE Processing Pipeline 8663d9033c5731e91943f20e89f27d06 https://www.encodeproject.org/files/ENCFF580PSR/@@download/ENCFF580PSR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF542IUY bam unfiltered alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF582GZQ, ENCFF643CGH 1140864522 ENCODE Processing Pipeline efc58a0d0a9ab23caf392c42b3353eeb https://www.encodeproject.org/files/ENCFF542IUY/@@download/ENCFF542IUY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF256TIZ bam unfiltered alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF582GZQ, ENCFF807MUK 1135921065 ENCODE Processing Pipeline 69f80302fd5b092f578a8a4880d9df7c https://www.encodeproject.org/files/ENCFF256TIZ/@@download/ENCFF256TIZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF010TVY bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF871VOL 554647663 ENCODE Processing Pipeline c330cc35e45e1388e97d3793bd105c77 https://www.encodeproject.org/files/ENCFF010TVY/@@download/ENCFF010TVY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF057SMG bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF582GZQ, ENCFF643CGH 604858692 ENCODE Processing Pipeline d5d60cfdcfea11d5c0ea96d3bcc57f5d https://www.encodeproject.org/files/ENCFF057SMG/@@download/ENCFF057SMG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF203ABU bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF582GZQ, ENCFF807MUK 605547827 ENCODE Processing Pipeline 9ec344c64f9d98346c8bbc5f96ce010e https://www.encodeproject.org/files/ENCFF203ABU/@@download/ENCFF203ABU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF084VEW bigWig fold change over control ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF203ABU, ENCFF222PVF, ENCFF477SGV, ENCFF705ZEH 780439308 ENCODE Processing Pipeline 274e20d1dd26513c885ec0395d4fdd06 https://www.encodeproject.org/files/ENCFF084VEW/@@download/ENCFF084VEW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF658SVX bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF203ABU, ENCFF705ZEH 5319820 ENCODE Processing Pipeline 27097323d9c4e72c0cfc64ffabfee66d https://www.encodeproject.org/files/ENCFF658SVX/@@download/ENCFF658SVX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF129HHS bigBed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF658SVX 13223440 ENCODE Processing Pipeline 66be467299df12b15e825d4ae8a7a02b https://www.encodeproject.org/files/ENCFF129HHS/@@download/ENCFF129HHS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF007RRZ bigBed narrowPeak conservative idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF342ZVG 189246 ENCODE Processing Pipeline f8251893593e9797bee8976482631d86 https://www.encodeproject.org/files/ENCFF007RRZ/@@download/ENCFF007RRZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF750FVG bigWig fold change over control ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF222PVF, ENCFF477SGV 322573760 ENCODE Processing Pipeline 8b43d7ac93f4da31f8ed3ddf6fa6dc7c https://www.encodeproject.org/files/ENCFF750FVG/@@download/ENCFF750FVG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF681AZR bigWig fold change over control ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF203ABU, ENCFF705ZEH 355931656 ENCODE Processing Pipeline 5493bad799d3d135d52a7a396c594e9c https://www.encodeproject.org/files/ENCFF681AZR/@@download/ENCFF681AZR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF948OFI bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF222PVF, ENCFF477SGV 5295909 ENCODE Processing Pipeline edab1ed4566b4314cc23b829e56f8d33 https://www.encodeproject.org/files/ENCFF948OFI/@@download/ENCFF948OFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF473NOQ bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF203ABU, ENCFF222PVF, ENCFF477SGV, ENCFF705ZEH 6716591 ENCODE Processing Pipeline 48a613334fcd7390397d1898e33b8ca9 https://www.encodeproject.org/files/ENCFF473NOQ/@@download/ENCFF473NOQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF960XVZ bigBed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF948OFI 13190788 ENCODE Processing Pipeline 2d08fefb8e016b0b9154cc563a7b158d https://www.encodeproject.org/files/ENCFF960XVZ/@@download/ENCFF960XVZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF417XQM bigBed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF473NOQ 13413559 ENCODE Processing Pipeline a56eb53f5c425a8a3abc887de1e0f60e https://www.encodeproject.org/files/ENCFF417XQM/@@download/ENCFF417XQM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF730URE bed narrowPeak optimal idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF473NOQ, ENCFF658SVX, ENCFF948OFI 82082 ENCODE Processing Pipeline 6da5084fceeea43dc8aba95ea3187c52 https://www.encodeproject.org/files/ENCFF730URE/@@download/ENCFF730URE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF763QWR bigBed narrowPeak optimal idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF730URE 205520 ENCODE Processing Pipeline 4b552c35bd078e671e560619329bdf04 https://www.encodeproject.org/files/ENCFF763QWR/@@download/ENCFF763QWR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF342ZVG bed narrowPeak conservative idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF473NOQ, ENCFF658SVX, ENCFF948OFI 72695 ENCODE Processing Pipeline cbb92343d0de0b3cc29604b57c81f083 https://www.encodeproject.org/files/ENCFF342ZVG/@@download/ENCFF342ZVG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF074NKR bigWig signal p-value ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF222PVF, ENCFF477SGV 414653364 ENCODE Processing Pipeline 826829ec5b30fe503cf7895a088a0afc https://www.encodeproject.org/files/ENCFF074NKR/@@download/ENCFF074NKR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF843IKA bigWig signal p-value ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF203ABU, ENCFF705ZEH 423187372 ENCODE Processing Pipeline ebdd51f2cc925f85f8a3e306b4529a89 https://www.encodeproject.org/files/ENCFF843IKA/@@download/ENCFF843IKA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF773JAL bigWig signal p-value ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF203ABU, ENCFF222PVF, ENCFF477SGV, ENCFF705ZEH 750756898 ENCODE Processing Pipeline 1acd7b51083b584ead39f9d3439f3a84 https://www.encodeproject.org/files/ENCFF773JAL/@@download/ENCFF773JAL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF157FXZ bigWig signal p-value ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF010TVY, ENCFF308PSW 492680041 ENCODE Processing Pipeline 178320e0f0c2aba003d364205e6edec5 https://www.encodeproject.org/files/ENCFF157FXZ/@@download/ENCFF157FXZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF345IQA bigWig signal p-value ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF057SMG, ENCFF198JCQ 425655750 ENCODE Processing Pipeline 410f2fc0ebe8334deae20651fbbaf4cf https://www.encodeproject.org/files/ENCFF345IQA/@@download/ENCFF345IQA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF552CCU bigWig fold change over control ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF057SMG, ENCFF198JCQ 355782389 ENCODE Processing Pipeline d2efad2157efe1d909c0c9ee4852b387 https://www.encodeproject.org/files/ENCFF552CCU/@@download/ENCFF552CCU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF664XDO bigBed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF251STL 13245691 ENCODE Processing Pipeline 9c76310c49d44643eb75809b255aca65 https://www.encodeproject.org/files/ENCFF664XDO/@@download/ENCFF664XDO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF761ITN bed narrowPeak conservative idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF251STL, ENCFF413JEY, ENCFF419RSJ, ENCFF763NYG 72551 ENCODE Processing Pipeline acd0a0a3faa69345e2e3a8597e3c06a5 https://www.encodeproject.org/files/ENCFF761ITN/@@download/ENCFF761ITN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF447BFV bigBed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF763NYG 13170242 ENCODE Processing Pipeline e0a53d0b82d5aad5b231f94cf9497891 https://www.encodeproject.org/files/ENCFF447BFV/@@download/ENCFF447BFV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF482DRO bed narrowPeak optimal idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF251STL, ENCFF413JEY, ENCFF419RSJ, ENCFF763NYG 82992 ENCODE Processing Pipeline d26d99b4850455d67a350c8833578aa1 https://www.encodeproject.org/files/ENCFF482DRO/@@download/ENCFF482DRO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749TGL bigWig fold change over control ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF010TVY, ENCFF308PSW 323887483 ENCODE Processing Pipeline f8050dbbd3ec9ce9e1349bf684ee0999 https://www.encodeproject.org/files/ENCFF749TGL/@@download/ENCFF749TGL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF763NYG bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF010TVY, ENCFF308PSW 5113711 ENCODE Processing Pipeline 8c12d6b7557d89bfab48c73b290b930d https://www.encodeproject.org/files/ENCFF763NYG/@@download/ENCFF763NYG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF251STL bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF057SMG, ENCFF198JCQ 5249963 ENCODE Processing Pipeline a75437180a3da7d5761960149bcf1b18 https://www.encodeproject.org/files/ENCFF251STL/@@download/ENCFF251STL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF780OBN bigWig signal p-value ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF010TVY, ENCFF057SMG, ENCFF198JCQ, ENCFF308PSW 872048219 ENCODE Processing Pipeline 90ba2c28575fa349e05be9afe2c0c3a5 https://www.encodeproject.org/files/ENCFF780OBN/@@download/ENCFF780OBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF209UZT bigWig fold change over control ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF010TVY, ENCFF057SMG, ENCFF198JCQ, ENCFF308PSW 742648735 ENCODE Processing Pipeline 5901e952189b9180b86e24f2d822f3cf https://www.encodeproject.org/files/ENCFF209UZT/@@download/ENCFF209UZT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF413JEY bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF010TVY, ENCFF057SMG, ENCFF198JCQ, ENCFF308PSW 6602926 ENCODE Processing Pipeline 2ea60528636839ef52131baac4b57ad2 https://www.encodeproject.org/files/ENCFF413JEY/@@download/ENCFF413JEY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF498TJC bigBed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF413JEY 13470561 ENCODE Processing Pipeline 4664bbee482f1dcbbea575701ac1cff3 https://www.encodeproject.org/files/ENCFF498TJC/@@download/ENCFF498TJC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF335XBA bigBed narrowPeak optimal idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF482DRO 209381 ENCODE Processing Pipeline 6265e89437022990d77645df977a23dd https://www.encodeproject.org/files/ENCFF335XBA/@@download/ENCFF335XBA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF069LAT bigBed narrowPeak conservative idr thresholded peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF761ITN 191782 ENCODE Processing Pipeline 8ade0d3c640b2ff7ae8aee65669e8286 https://www.encodeproject.org/files/ENCFF069LAT/@@download/ENCFF069LAT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF310UBW fastq reads ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF834BMO 3415296425 Michael Snyder, Stanford 3d00938d360f4a47dcc137ab0e1270f4 SRA:SRR6212614 https://www.encodeproject.org/files/ENCFF310UBW/@@download/ENCFF310UBW.fastq.gz Illumina HiSeq 4000 /files/ENCFF347NHA/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF834BMO fastq reads ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF310UBW 4150470997 Michael Snyder, Stanford 890ad809011c9824a11d7a2fb99a3bf0 SRA:SRR6212614 https://www.encodeproject.org/files/ENCFF834BMO/@@download/ENCFF834BMO.fastq.gz Illumina HiSeq 4000 /files/ENCFF027HUL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF138YYG bam unfiltered alignments ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF310UBW, ENCFF643CGH, ENCFF834BMO 6714869483 ENCODE Processing Pipeline 98f9c80149b3bee9edb3bb2869e3b32a https://www.encodeproject.org/files/ENCFF138YYG/@@download/ENCFF138YYG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF421ZNL bam alignments ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF310UBW, ENCFF643CGH, ENCFF834BMO 3851548503 ENCODE Processing Pipeline 48760212ab6d1f1b29af6f4ae18e0367 https://www.encodeproject.org/files/ENCFF421ZNL/@@download/ENCFF421ZNL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF927WXC bam unfiltered alignments ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF310UBW, ENCFF807MUK, ENCFF834BMO 6714305575 ENCODE Processing Pipeline e59d4c4bad01608c6bde5c4389093ee2 https://www.encodeproject.org/files/ENCFF927WXC/@@download/ENCFF927WXC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF552ZVE bam alignments ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF310UBW, ENCFF807MUK, ENCFF834BMO 3846368853 ENCODE Processing Pipeline afd2aca580c07c28dcecd91b895abb75 https://www.encodeproject.org/files/ENCFF552ZVE/@@download/ENCFF552ZVE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF637JPV bed narrowPeak peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF122KYV, ENCFF552ZVE 6165335 ENCODE Processing Pipeline 09aec9b9031d1bab2449b2aad218eccc https://www.encodeproject.org/files/ENCFF637JPV/@@download/ENCFF637JPV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF295MOB bigBed narrowPeak peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF637JPV 11413042 ENCODE Processing Pipeline a5efebd6ff4d250073f3ac948b8be23c https://www.encodeproject.org/files/ENCFF295MOB/@@download/ENCFF295MOB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF253ERV bigWig signal p-value ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF122KYV, ENCFF552ZVE 1037567566 ENCODE Processing Pipeline fbbaa043beca00f4133d7b359f4d0352 https://www.encodeproject.org/files/ENCFF253ERV/@@download/ENCFF253ERV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF679ULL bigWig fold change over control ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF122KYV, ENCFF552ZVE 1240378395 ENCODE Processing Pipeline 2d067bdb4b56c75a987876ff07aff02b https://www.encodeproject.org/files/ENCFF679ULL/@@download/ENCFF679ULL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF653ILB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF637JPV 246500 ENCODE Processing Pipeline a85f844ba004ecf77051bb0eb4f8ef90 https://www.encodeproject.org/files/ENCFF653ILB/@@download/ENCFF653ILB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF347TXB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF653ILB 483137 ENCODE Processing Pipeline 38ec561c65f2f97b64fb7f7d9bd8ed33 https://www.encodeproject.org/files/ENCFF347TXB/@@download/ENCFF347TXB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF105NZH bigWig signal p-value ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF421ZNL, ENCFF640GGJ 1061629330 ENCODE Processing Pipeline 6c06ebc557b0246abedfa096f18bef46 https://www.encodeproject.org/files/ENCFF105NZH/@@download/ENCFF105NZH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF401DJJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF419RSJ, ENCFF788JPL 245023 ENCODE Processing Pipeline 85a23836aa413cf943b55dbf39e1102a https://www.encodeproject.org/files/ENCFF401DJJ/@@download/ENCFF401DJJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF815RXQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF401DJJ 482233 ENCODE Processing Pipeline e4178d21771360c5d36cc3b0b7f56cbb https://www.encodeproject.org/files/ENCFF815RXQ/@@download/ENCFF815RXQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF046ZOY bigWig fold change over control ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF421ZNL, ENCFF640GGJ 1241032358 ENCODE Processing Pipeline 4badfbf61f1e8a38dfbbe6d427f85c37 https://www.encodeproject.org/files/ENCFF046ZOY/@@download/ENCFF046ZOY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF998TYG bigBed narrowPeak peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF788JPL 11435054 ENCODE Processing Pipeline 0b00863c486fa44ffec1856481ac8757 https://www.encodeproject.org/files/ENCFF998TYG/@@download/ENCFF998TYG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF788JPL bed narrowPeak peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF421ZNL, ENCFF640GGJ 6170100 ENCODE Processing Pipeline 413a1fa7246f2ad54f9b8516941c08a3 https://www.encodeproject.org/files/ENCFF788JPL/@@download/ENCFF788JPL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF757IXD fastq reads ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF643EOI 2735587818 Michael Snyder, Stanford e31d6ca766165fc99f2cc4d9e3c58ee8 SRA:SRR6213379 https://www.encodeproject.org/files/ENCFF757IXD/@@download/ENCFF757IXD.fastq.gz Illumina HiSeq 4000 /files/ENCFF293SGU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF643EOI fastq reads ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF757IXD 2913186180 Michael Snyder, Stanford a029201deb21f3c41ef12d1b978d0ae8 SRA:SRR6213379 https://www.encodeproject.org/files/ENCFF643EOI/@@download/ENCFF643EOI.fastq.gz Illumina HiSeq 4000 /files/ENCFF875RIZ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF243GWJ bam unfiltered alignments ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643EOI, ENCFF757IXD, ENCFF807MUK 5188524436 ENCODE Processing Pipeline 7a0d7264e94d8b2c69933dfcf204651e https://www.encodeproject.org/files/ENCFF243GWJ/@@download/ENCFF243GWJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF746SEG bam unfiltered alignments ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF643EOI, ENCFF757IXD 5191943619 ENCODE Processing Pipeline b68ab13dc04583b9458360abf16ff750 https://www.encodeproject.org/files/ENCFF746SEG/@@download/ENCFF746SEG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF308XAR bam alignments ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF643EOI, ENCFF757IXD 4055244717 ENCODE Processing Pipeline 4a04c5d97b45a2ab9d20d56938a7ba68 https://www.encodeproject.org/files/ENCFF308XAR/@@download/ENCFF308XAR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF590SXF bam alignments ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643EOI, ENCFF757IXD, ENCFF807MUK 4052180964 ENCODE Processing Pipeline 5c843608b138bb6aecb3a0173fb82a0a https://www.encodeproject.org/files/ENCFF590SXF/@@download/ENCFF590SXF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF562HIW bigWig fold change over control ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF541PDU, ENCFF590SXF 1166718428 ENCODE Processing Pipeline dcccaccf6eb78c770b70f7a72faaf9ba https://www.encodeproject.org/files/ENCFF562HIW/@@download/ENCFF562HIW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF907KYX bigWig signal p-value ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF541PDU, ENCFF590SXF 988078441 ENCODE Processing Pipeline 338e58af99c309045681f1e364b22e91 https://www.encodeproject.org/files/ENCFF907KYX/@@download/ENCFF907KYX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF767XFY bed narrowPeak peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF541PDU, ENCFF590SXF 6892463 ENCODE Processing Pipeline f29bc166ba42a2cfaa93484b384783cb https://www.encodeproject.org/files/ENCFF767XFY/@@download/ENCFF767XFY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF736DQP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF767XFY 622425 ENCODE Processing Pipeline 75e397035c9da12c527d2c748ae930f7 https://www.encodeproject.org/files/ENCFF736DQP/@@download/ENCFF736DQP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF458CQK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF736DQP 1453104 ENCODE Processing Pipeline 3f26bb0d0dee0474a221bcba36ab7c18 https://www.encodeproject.org/files/ENCFF458CQK/@@download/ENCFF458CQK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF937ZVC bigBed narrowPeak peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF767XFY 13276878 ENCODE Processing Pipeline c196dd006bae4cba5e7524fd682b62e2 https://www.encodeproject.org/files/ENCFF937ZVC/@@download/ENCFF937ZVC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF888TMQ bigWig signal p-value ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF308XAR, ENCFF883LGP 1218825291 ENCODE Processing Pipeline 21864f7b7341f6f623b33edcb6e50643 https://www.encodeproject.org/files/ENCFF888TMQ/@@download/ENCFF888TMQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF058VCF bigWig fold change over control ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF308XAR, ENCFF883LGP 1167194474 ENCODE Processing Pipeline 1e42c46757c4fbf814ccfaf4c75a5b87 https://www.encodeproject.org/files/ENCFF058VCF/@@download/ENCFF058VCF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF079QGD bed narrowPeak peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF308XAR, ENCFF883LGP 6935014 ENCODE Processing Pipeline 933b037bde8d03b96fb232b41c510a92 https://www.encodeproject.org/files/ENCFF079QGD/@@download/ENCFF079QGD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF929SUT bigBed narrowPeak peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF079QGD 13340809 ENCODE Processing Pipeline e7c858692ceb6204996c2564ccb23047 https://www.encodeproject.org/files/ENCFF929SUT/@@download/ENCFF929SUT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF445NPR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF079QGD, ENCFF419RSJ 639802 ENCODE Processing Pipeline c6ae035d4839a5374de56a2d018aac15 https://www.encodeproject.org/files/ENCFF445NPR/@@download/ENCFF445NPR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF282NMI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF445NPR 1483012 ENCODE Processing Pipeline f1a49354cea6211aff87e6b91386b126 https://www.encodeproject.org/files/ENCFF282NMI/@@download/ENCFF282NMI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF241CFU fastq reads ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF962IZX 2904214563 Michael Snyder, Stanford d8f0526a3e47d795b454b9aaa6c5a1e7 SRA:SRR6212659 https://www.encodeproject.org/files/ENCFF241CFU/@@download/ENCFF241CFU.fastq.gz Illumina HiSeq 4000 /files/ENCFF267FZI/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF962IZX fastq reads ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF241CFU 3478138853 Michael Snyder, Stanford afddee0870d87b51ff091b087a6a1bd2 SRA:SRR6212659 https://www.encodeproject.org/files/ENCFF962IZX/@@download/ENCFF962IZX.fastq.gz Illumina HiSeq 4000 /files/ENCFF599PHN/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF680YON bam unfiltered alignments ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF241CFU, ENCFF807MUK, ENCFF962IZX 5999806044 ENCODE Processing Pipeline dfe8585f2aaed43b14194c802e46e512 https://www.encodeproject.org/files/ENCFF680YON/@@download/ENCFF680YON.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF457RIG bam unfiltered alignments ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF241CFU, ENCFF643CGH, ENCFF962IZX 6005233248 ENCODE Processing Pipeline fd78bb1a15db872a6cfafd91bbed9895 https://www.encodeproject.org/files/ENCFF457RIG/@@download/ENCFF457RIG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF840IWN bam alignments ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF241CFU, ENCFF643CGH, ENCFF962IZX 4569147508 ENCODE Processing Pipeline 378286c71cb3cc0013f81ab5aa70e83f https://www.encodeproject.org/files/ENCFF840IWN/@@download/ENCFF840IWN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF719ANC bam alignments ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF241CFU, ENCFF807MUK, ENCFF962IZX 4562955895 ENCODE Processing Pipeline 2a96e6f9b39d2599a5a7f9b18f7fcae8 https://www.encodeproject.org/files/ENCFF719ANC/@@download/ENCFF719ANC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF429DRJ bigWig signal p-value ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF719ANC, ENCFF846EWR 1372075206 ENCODE Processing Pipeline 3fdc4db3d72c6ea5d711dd4a2edb40ab https://www.encodeproject.org/files/ENCFF429DRJ/@@download/ENCFF429DRJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF299CAD bed narrowPeak peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF719ANC, ENCFF846EWR 7029538 ENCODE Processing Pipeline 11d2e66b4052538a0d4ca40dc2a967ba https://www.encodeproject.org/files/ENCFF299CAD/@@download/ENCFF299CAD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF845WMM bigWig fold change over control ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF719ANC, ENCFF846EWR 1344673681 ENCODE Processing Pipeline fb9e16dec4505c0e82ac1593fcff52a1 https://www.encodeproject.org/files/ENCFF845WMM/@@download/ENCFF845WMM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF402GUV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF023MUY 1415362 ENCODE Processing Pipeline 0714828b01cea91067a266f0bfb29fe1 https://www.encodeproject.org/files/ENCFF402GUV/@@download/ENCFF402GUV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF320LKA bigBed narrowPeak peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF299CAD 13162119 ENCODE Processing Pipeline ab1ae6aebc29aac4454d6e38737081ab https://www.encodeproject.org/files/ENCFF320LKA/@@download/ENCFF320LKA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF023MUY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF299CAD 632079 ENCODE Processing Pipeline 29dfbc1ed8be037449cb58245e7837a2 https://www.encodeproject.org/files/ENCFF023MUY/@@download/ENCFF023MUY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF145FSC bigWig signal p-value ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF840IWN, ENCFF964IJV 1358664487 ENCODE Processing Pipeline b62d8fb402297748789acd946cf7fa28 https://www.encodeproject.org/files/ENCFF145FSC/@@download/ENCFF145FSC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF270VBT bed narrowPeak peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF840IWN, ENCFF964IJV 7073730 ENCODE Processing Pipeline 67972e3a94847bcdb93ed27167260048 https://www.encodeproject.org/files/ENCFF270VBT/@@download/ENCFF270VBT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF817TFH bigWig fold change over control ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF840IWN, ENCFF964IJV 1329996405 ENCODE Processing Pipeline 15ae4fa3a25364cae653922619e95e41 https://www.encodeproject.org/files/ENCFF817TFH/@@download/ENCFF817TFH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF035CSS bigBed narrowPeak peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF270VBT 13226226 ENCODE Processing Pipeline da1776fa710150380aad1aebe6414f2e https://www.encodeproject.org/files/ENCFF035CSS/@@download/ENCFF035CSS.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF468AEV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF270VBT, ENCFF419RSJ 642010 ENCODE Processing Pipeline d42b2084eb5b08f97b3a73440b5a1a03 https://www.encodeproject.org/files/ENCFF468AEV/@@download/ENCFF468AEV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF743UCF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF468AEV 1434143 ENCODE Processing Pipeline d4fe2aa9cdf097e0836666e4728ea4fb https://www.encodeproject.org/files/ENCFF743UCF/@@download/ENCFF743UCF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF556MUX fastq reads ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 1 100 paired-ended 1 ENCFF672XQY 2363369566 Michael Snyder, Stanford 67ae472923c88ea5378c56ef7ed61593 SRA:SRR6212850 https://www.encodeproject.org/files/ENCFF556MUX/@@download/ENCFF556MUX.fastq.gz Illumina HiSeq 4000 /files/ENCFF320GMX/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF672XQY fastq reads ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 1 100 paired-ended 2 ENCFF556MUX 2856022175 Michael Snyder, Stanford 22abcafb39d947a777d9b1218c99f99b SRA:SRR6212850 https://www.encodeproject.org/files/ENCFF672XQY/@@download/ENCFF672XQY.fastq.gz Illumina HiSeq 4000 /files/ENCFF493QSZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF230HMY bam unfiltered alignments ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 100 ENCFF556MUX, ENCFF643CGH, ENCFF672XQY 4781999372 ENCODE Processing Pipeline 04327c476ea2d44b4542d1a21dd4d9c9 https://www.encodeproject.org/files/ENCFF230HMY/@@download/ENCFF230HMY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF979WLX bam alignments ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 100 ENCFF556MUX, ENCFF643CGH, ENCFF672XQY 2974068992 ENCODE Processing Pipeline f466e90a2febc6707d1b3cd38ad57622 https://www.encodeproject.org/files/ENCFF979WLX/@@download/ENCFF979WLX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF719UJD bam unfiltered alignments ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 100 ENCFF556MUX, ENCFF672XQY, ENCFF807MUK 4780323740 ENCODE Processing Pipeline 6f1fe0726c1f8d5a15e7b3b5d85d3f3c https://www.encodeproject.org/files/ENCFF719UJD/@@download/ENCFF719UJD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF750HDH bam alignments ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 100 ENCFF556MUX, ENCFF672XQY, ENCFF807MUK 2970945262 ENCODE Processing Pipeline 1cfac70d4cf21c15becc7e316dc9301c https://www.encodeproject.org/files/ENCFF750HDH/@@download/ENCFF750HDH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF338AWN bigWig signal p-value ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF340ZEP, ENCFF750HDH 936571642 ENCODE Processing Pipeline eaaca34573fbccc6e4313e39ab879cc2 https://www.encodeproject.org/files/ENCFF338AWN/@@download/ENCFF338AWN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF215JJY bed narrowPeak peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF340ZEP, ENCFF750HDH 6353953 ENCODE Processing Pipeline 0cebf17361f2bd7737eec6734bf38f52 https://www.encodeproject.org/files/ENCFF215JJY/@@download/ENCFF215JJY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF862FKS bigWig fold change over control ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF340ZEP, ENCFF750HDH 996422413 ENCODE Processing Pipeline de2cd246ddda78af6f9bfbff804c5db3 https://www.encodeproject.org/files/ENCFF862FKS/@@download/ENCFF862FKS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF823BWT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF001TDO, ENCFF215JJY 397872 ENCODE Processing Pipeline a78bc8f5c37d164e9f8f09a97e0b0cbd https://www.encodeproject.org/files/ENCFF823BWT/@@download/ENCFF823BWT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF615KCK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF823BWT 848071 ENCODE Processing Pipeline 33d494e89e52d18754c6f1542e31d960 https://www.encodeproject.org/files/ENCFF615KCK/@@download/ENCFF615KCK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF631AOU bigBed narrowPeak peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF215JJY 13568172 ENCODE Processing Pipeline b2fd26c88b4fd98ea969a8bd53b80404 https://www.encodeproject.org/files/ENCFF631AOU/@@download/ENCFF631AOU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF314DQL bigWig fold change over control ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF679CSN, ENCFF979WLX 995839590 ENCODE Processing Pipeline 2f95a08d403322a67fd69a74eb26af97 https://www.encodeproject.org/files/ENCFF314DQL/@@download/ENCFF314DQL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF926DBK bigBed narrowPeak peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF854WGL 13610766 ENCODE Processing Pipeline f9c1e57617b0768a9c7889aa62ec8873 https://www.encodeproject.org/files/ENCFF926DBK/@@download/ENCFF926DBK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF618XAH bigWig signal p-value ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF679CSN, ENCFF979WLX 1034347585 ENCODE Processing Pipeline f4b512572927c0df04826e8093bbe484 https://www.encodeproject.org/files/ENCFF618XAH/@@download/ENCFF618XAH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF854WGL bed narrowPeak peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF679CSN, ENCFF979WLX 6374471 ENCODE Processing Pipeline a03f45d890b3f30890ea28abcb51324c https://www.encodeproject.org/files/ENCFF854WGL/@@download/ENCFF854WGL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF355SDI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF419RSJ, ENCFF854WGL 410101 ENCODE Processing Pipeline 5036d9b15392ce254ecd4d738b95ed77 https://www.encodeproject.org/files/ENCFF355SDI/@@download/ENCFF355SDI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF882KYB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF355SDI 866412 ENCODE Processing Pipeline aa7d37998609c3ca84a1f9d03adab193 https://www.encodeproject.org/files/ENCFF882KYB/@@download/ENCFF882KYB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF675YZO fastq reads ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1670580275 Richard Myers, HAIB d10d78264c7973899d8c334a2bf91865 SRA:SRR5338736 https://www.encodeproject.org/files/ENCFF675YZO/@@download/ENCFF675YZO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF805RHK fastq reads ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1691414768 Richard Myers, HAIB d86fd5bfe4f1c6ec91367e0b5ede1815 SRA:SRR5338735 https://www.encodeproject.org/files/ENCFF805RHK/@@download/ENCFF805RHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF238HYZ bam unfiltered alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF805RHK 1966869587 ENCODE Processing Pipeline f4bdf1c3ff254916b177f9c1284039b5 https://www.encodeproject.org/files/ENCFF238HYZ/@@download/ENCFF238HYZ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF093LZD bam unfiltered alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF675YZO 2005959372 ENCODE Processing Pipeline 91aec1dc6b208ca4be6ee83781bb8e76 https://www.encodeproject.org/files/ENCFF093LZD/@@download/ENCFF093LZD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515UJH bam unfiltered alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF675YZO, ENCFF807MUK 2000008934 ENCODE Processing Pipeline 5d8462a7c1a7f53c40764b6351310951 https://www.encodeproject.org/files/ENCFF515UJH/@@download/ENCFF515UJH.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF275CBR bam unfiltered alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF805RHK, ENCFF807MUK 1963070885 ENCODE Processing Pipeline 3d95ae24e687867f8e692fcd117aa93f https://www.encodeproject.org/files/ENCFF275CBR/@@download/ENCFF275CBR.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF793TUM bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF805RHK 1527686828 ENCODE Processing Pipeline 29649e878989a5f1345859929c943cc3 https://www.encodeproject.org/files/ENCFF793TUM/@@download/ENCFF793TUM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF626RYW bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF675YZO 1520005155 ENCODE Processing Pipeline a74b69415811475ed3297101129c4b78 https://www.encodeproject.org/files/ENCFF626RYW/@@download/ENCFF626RYW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF397BSD bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF675YZO, ENCFF807MUK 1518687912 ENCODE Processing Pipeline 41468a2b3feb7f4a003697b8fef531c6 https://www.encodeproject.org/files/ENCFF397BSD/@@download/ENCFF397BSD.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738WIY bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF805RHK, ENCFF807MUK 1527130406 ENCODE Processing Pipeline d7d72237624ce5b3e765928ad6b39ae9 https://www.encodeproject.org/files/ENCFF738WIY/@@download/ENCFF738WIY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF326GYT bigWig signal p-value ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF793TUM 711804861 ENCODE Processing Pipeline b7da9de1a098824d723e9dfbfe381cd4 https://www.encodeproject.org/files/ENCFF326GYT/@@download/ENCFF326GYT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF034NUN bigWig signal p-value ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF626RYW 627703212 ENCODE Processing Pipeline 875659a1df6200df944a98794e196fe5 https://www.encodeproject.org/files/ENCFF034NUN/@@download/ENCFF034NUN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF510GXL bigWig fold change over control ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF626RYW 561603479 ENCODE Processing Pipeline a9033825dc56100e617b2ee01ed213df https://www.encodeproject.org/files/ENCFF510GXL/@@download/ENCFF510GXL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF390FNX bigWig fold change over control ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF793TUM 596157279 ENCODE Processing Pipeline a8fe5092063516b37f9b0dcd343963b8 https://www.encodeproject.org/files/ENCFF390FNX/@@download/ENCFF390FNX.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF716VRZ bigWig signal p-value ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF626RYW, ENCFF793TUM 678533894 ENCODE Processing Pipeline 43a8351c77d3297965e0fa3e26b63b20 https://www.encodeproject.org/files/ENCFF716VRZ/@@download/ENCFF716VRZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF231BNU bigWig fold change over control ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF626RYW, ENCFF793TUM 972014450 ENCODE Processing Pipeline caa99e3067bcb9d26523a897283d1d63 https://www.encodeproject.org/files/ENCFF231BNU/@@download/ENCFF231BNU.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF320HFM bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF626RYW 5161795 ENCODE Processing Pipeline 30884ff2a738df5fee93a825e6cf76fe https://www.encodeproject.org/files/ENCFF320HFM/@@download/ENCFF320HFM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF868IGH bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF793TUM 6437374 ENCODE Processing Pipeline dd07ce3fa6e876f669d2cb8b6edd5a24 https://www.encodeproject.org/files/ENCFF868IGH/@@download/ENCFF868IGH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF004ECM bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF626RYW, ENCFF793TUM 6744457 ENCODE Processing Pipeline d321567e429495bb79f5fb0ea32a5726 https://www.encodeproject.org/files/ENCFF004ECM/@@download/ENCFF004ECM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF025WRB bigBed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF320HFM 11209853 ENCODE Processing Pipeline 896ff872d2577c20f4bdec88a3047cf7 https://www.encodeproject.org/files/ENCFF025WRB/@@download/ENCFF025WRB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF431WJV bigBed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF004ECM 13222149 ENCODE Processing Pipeline 9ebfbc77c428da0af8d38d7cb68ea6f7 https://www.encodeproject.org/files/ENCFF431WJV/@@download/ENCFF431WJV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935EJT bigBed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF868IGH 13044787 ENCODE Processing Pipeline 75b4334d7b1ca6a29dbfd2d3b2d5bd4f https://www.encodeproject.org/files/ENCFF935EJT/@@download/ENCFF935EJT.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF740UST bed narrowPeak conservative idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF004ECM, ENCFF320HFM, ENCFF419RSJ, ENCFF868IGH 210849 ENCODE Processing Pipeline 8ba0b52d833e3fa006869f411745a79a https://www.encodeproject.org/files/ENCFF740UST/@@download/ENCFF740UST.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF997MQD bigBed narrowPeak conservative idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF740UST 498003 ENCODE Processing Pipeline 07cf7434483ac795324411cd4e4e24e1 https://www.encodeproject.org/files/ENCFF997MQD/@@download/ENCFF997MQD.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF671MXD bed narrowPeak optimal idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF004ECM, ENCFF320HFM, ENCFF419RSJ, ENCFF868IGH 294163 ENCODE Processing Pipeline 3b4ab9045a00281242b5dd777b634fb0 https://www.encodeproject.org/files/ENCFF671MXD/@@download/ENCFF671MXD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF055TYB bigBed narrowPeak optimal idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF671MXD 634459 ENCODE Processing Pipeline 4a0b92de0b36db9909ce286dece9962b https://www.encodeproject.org/files/ENCFF055TYB/@@download/ENCFF055TYB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF471BTX bigWig signal p-value ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF397BSD 1303043680 ENCODE Processing Pipeline c47c4f9cfa8cfa0c9719c3f46e19b847 https://www.encodeproject.org/files/ENCFF471BTX/@@download/ENCFF471BTX.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515CFH bigWig signal p-value ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738WIY 1399526376 ENCODE Processing Pipeline d04996640b686a551af86b48d4beab96 https://www.encodeproject.org/files/ENCFF515CFH/@@download/ENCFF515CFH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF007GSA bigWig signal p-value ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF397BSD, ENCFF738WIY 1521452975 ENCODE Processing Pipeline e4cc65b400b744c7cd5a63d276b126d6 https://www.encodeproject.org/files/ENCFF007GSA/@@download/ENCFF007GSA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF019GAY bigWig fold change over control ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF397BSD 1043355759 ENCODE Processing Pipeline 899ecf07123f0ec470993ce8b37f17c8 https://www.encodeproject.org/files/ENCFF019GAY/@@download/ENCFF019GAY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF299LXH bigWig fold change over control ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738WIY 1136001855 ENCODE Processing Pipeline 9cdba7ae90bcfc778a6df8d38e3fa9c8 https://www.encodeproject.org/files/ENCFF299LXH/@@download/ENCFF299LXH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF025ZTI bigWig fold change over control ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF397BSD, ENCFF738WIY 1608898741 ENCODE Processing Pipeline 4aa09a43484f39d731868b79369beb4e https://www.encodeproject.org/files/ENCFF025ZTI/@@download/ENCFF025ZTI.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF591FQI bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF397BSD 6105818 ENCODE Processing Pipeline 2f6fe382a6ba4a993806f34e06efcff8 https://www.encodeproject.org/files/ENCFF591FQI/@@download/ENCFF591FQI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF268UTN bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738WIY 6950099 ENCODE Processing Pipeline 75cf7572bfed1e5a80a131daf9d885d9 https://www.encodeproject.org/files/ENCFF268UTN/@@download/ENCFF268UTN.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF148YIQ bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF397BSD, ENCFF738WIY 7142248 ENCODE Processing Pipeline ebe8edbddc82fef19f2742b01faf6078 https://www.encodeproject.org/files/ENCFF148YIQ/@@download/ENCFF148YIQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF812MCC bigBed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF591FQI 11447688 ENCODE Processing Pipeline 130498601423750f49c26a9ecf8b77b9 https://www.encodeproject.org/files/ENCFF812MCC/@@download/ENCFF812MCC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF748QKT bigBed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF268UTN 13090697 ENCODE Processing Pipeline 3f8fdce18ef89b5f2f321d6491c7593b https://www.encodeproject.org/files/ENCFF748QKT/@@download/ENCFF748QKT.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF614IMW bed narrowPeak conservative idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF148YIQ, ENCFF268UTN, ENCFF591FQI 209328 ENCODE Processing Pipeline 67084dd59ad5a65829a072076067b721 https://www.encodeproject.org/files/ENCFF614IMW/@@download/ENCFF614IMW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF311TIA bigBed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF148YIQ 13244005 ENCODE Processing Pipeline 6eb3b294f2ffd698d613fde96f779a80 https://www.encodeproject.org/files/ENCFF311TIA/@@download/ENCFF311TIA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF507VOM bigBed narrowPeak conservative idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF614IMW 420315 ENCODE Processing Pipeline 5541d1c0060fa31ed259a0bc7efef535 https://www.encodeproject.org/files/ENCFF507VOM/@@download/ENCFF507VOM.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF665HTJ bed narrowPeak optimal idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF148YIQ, ENCFF268UTN, ENCFF591FQI 278865 ENCODE Processing Pipeline 81d97c0e755012706e3cd0c23fdc0f0c https://www.encodeproject.org/files/ENCFF665HTJ/@@download/ENCFF665HTJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF032CXU bigBed narrowPeak optimal idr thresholded peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF665HTJ 632879 ENCODE Processing Pipeline a3f98d468dac2c70a753563e7e3767ae https://www.encodeproject.org/files/ENCFF032CXU/@@download/ENCFF032CXU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000XOA bam alignments ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XOL 308266449 Peggy Farnham, USC 356245f865915b274feaa5f5152e84d3 https://www.encodeproject.org/files/ENCFF000XOA/@@download/ENCFF000XOA.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XOB bigBed narrowPeak peaks ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJS 88794 Peggy Farnham, USC db3d4247ae788a933bd4c8a6d60b37d1 https://www.encodeproject.org/files/ENCFF000XOB/@@download/ENCFF000XOB.bigBed hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XOC bam alignments ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XOK 465407677 Peggy Farnham, USC 54e2bfd58b72471d1556f0a258e37a9f https://www.encodeproject.org/files/ENCFF000XOC/@@download/ENCFF000XOC.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XOD bigWig signal ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 274356093 Peggy Farnham, USC 731afa86aae30dd73668e16aaf3eba02 https://www.encodeproject.org/files/ENCFF000XOD/@@download/ENCFF000XOD.bigWig hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XOK fastq reads ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1421060983 Peggy Farnham, USC 0b51a4d4ae58650e1859ad36759bc8cc https://www.encodeproject.org/files/ENCFF000XOK/@@download/ENCFF000XOK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGR/ released low read length, inconsistent control read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XOL fastq reads ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 554319592 Peggy Farnham, USC ce07d9b8d126e9ff251861f37118f368 https://www.encodeproject.org/files/ENCFF000XOL/@@download/ENCFF000XOL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGR/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF001VJS bed narrowPeak peaks ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 6107 Peggy Farnham, USC 01042b58a39d185636cb6ad56401f346 https://www.encodeproject.org/files/ENCFF001VJS/@@download/ENCFF001VJS.bed.gz hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CTQ bed narrowPeak optimal idr thresholded peaks ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2349 ENCODE Consortium Analysis Working Group e6be10ccea019d58d0316cc3e758334e https://www.encodeproject.org/files/ENCFF002CTQ/@@download/ENCFF002CTQ.bed.gz hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF312DNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTQ 18532 ENCODE Consortium ed88b5758a6275cf3b05e3dae80d27bc https://www.encodeproject.org/files/ENCFF312DNZ/@@download/ENCFF312DNZ.bigBed hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF633ZLO fastq reads ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1372902736 Richard Myers, HAIB ff3e860f685ef460285e4e82d9fddfc0 SRA:SRR5339286 https://www.encodeproject.org/files/ENCFF633ZLO/@@download/ENCFF633ZLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF762ILJ fastq reads ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1423505960 Richard Myers, HAIB 7bdd6af8f70b027a270c92674c928680 SRA:SRR5339287 https://www.encodeproject.org/files/ENCFF762ILJ/@@download/ENCFF762ILJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF496MEG bam unfiltered alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF633ZLO, ENCFF643CGH 1608002874 ENCODE Processing Pipeline a550ace3d9d8f5d1630da310ca8d7bb2 https://www.encodeproject.org/files/ENCFF496MEG/@@download/ENCFF496MEG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF251FIG bam unfiltered alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF633ZLO, ENCFF807MUK 1605189361 ENCODE Processing Pipeline 408fdd845ea967cf4fc459a264e54707 https://www.encodeproject.org/files/ENCFF251FIG/@@download/ENCFF251FIG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF723RGN bam unfiltered alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF762ILJ 1682846787 ENCODE Processing Pipeline 4a79cb67d3283fdd5cc0ce77641d32ce https://www.encodeproject.org/files/ENCFF723RGN/@@download/ENCFF723RGN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF407QSA bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF633ZLO, ENCFF643CGH 1184353880 ENCODE Processing Pipeline 5ab92f23082050da540092dca0932b5b https://www.encodeproject.org/files/ENCFF407QSA/@@download/ENCFF407QSA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF266IKT bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF762ILJ 1256392548 ENCODE Processing Pipeline 5389579078fc5ea90eadc1c5c9a0d146 https://www.encodeproject.org/files/ENCFF266IKT/@@download/ENCFF266IKT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521ZCY bam unfiltered alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF762ILJ, ENCFF807MUK 1679110924 ENCODE Processing Pipeline efb37dffc689cc4e43608ca9867aed4f https://www.encodeproject.org/files/ENCFF521ZCY/@@download/ENCFF521ZCY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249WJP bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF633ZLO, ENCFF807MUK 1184081598 ENCODE Processing Pipeline 40a07dae2cc02619be8411b2c871947a https://www.encodeproject.org/files/ENCFF249WJP/@@download/ENCFF249WJP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126EYL bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF762ILJ, ENCFF807MUK 1255869353 ENCODE Processing Pipeline f342f645530e8d0121df4d7ccb8cdb6d https://www.encodeproject.org/files/ENCFF126EYL/@@download/ENCFF126EYL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF272DSB bigWig signal p-value ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF266IKT 463357100 ENCODE Processing Pipeline fccd25d5e33183bc3dc7437eb4283f22 https://www.encodeproject.org/files/ENCFF272DSB/@@download/ENCFF272DSB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF164TLX bigWig signal p-value ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF407QSA 474661523 ENCODE Processing Pipeline bef0a0cee9be43c7bb9e8ffdd189813c https://www.encodeproject.org/files/ENCFF164TLX/@@download/ENCFF164TLX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF221YOP bigWig signal p-value ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF266IKT, ENCFF407QSA 656833160 ENCODE Processing Pipeline b57b7760aaa3b259a322cc72590b73ba https://www.encodeproject.org/files/ENCFF221YOP/@@download/ENCFF221YOP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF385BDJ bigWig fold change over control ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF266IKT 459357853 ENCODE Processing Pipeline 9142f68992ef21f75d21c0dc2a340ab3 https://www.encodeproject.org/files/ENCFF385BDJ/@@download/ENCFF385BDJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF023MRH bigWig fold change over control ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF407QSA 433101100 ENCODE Processing Pipeline 11dc7660794f8548b96f3d588a0cbfed https://www.encodeproject.org/files/ENCFF023MRH/@@download/ENCFF023MRH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF215RSZ bigWig fold change over control ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF266IKT, ENCFF407QSA 749486297 ENCODE Processing Pipeline 6878345a8f0b2eb5cd16c13001a94f91 https://www.encodeproject.org/files/ENCFF215RSZ/@@download/ENCFF215RSZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321NAD bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF266IKT 6095346 ENCODE Processing Pipeline 319bf735118491d35fb538cb9b64c674 https://www.encodeproject.org/files/ENCFF321NAD/@@download/ENCFF321NAD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF713HVN bigBed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF321NAD 13079160 ENCODE Processing Pipeline 1d79d94662ad26f53d262c5e044485e5 https://www.encodeproject.org/files/ENCFF713HVN/@@download/ENCFF713HVN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF831YRJ bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF407QSA 6492222 ENCODE Processing Pipeline 70c78e6f455c40712e0e19bddcb27a5e https://www.encodeproject.org/files/ENCFF831YRJ/@@download/ENCFF831YRJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF259LBW bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF266IKT, ENCFF407QSA 6911531 ENCODE Processing Pipeline aa7df2693b7a815786a883ac3a9bb482 https://www.encodeproject.org/files/ENCFF259LBW/@@download/ENCFF259LBW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF407YHS bed narrowPeak conservative idr thresholded peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF259LBW, ENCFF321NAD, ENCFF419RSJ, ENCFF831YRJ 335356 ENCODE Processing Pipeline 65a454abefd3f7d5c4ef89070d746827 https://www.encodeproject.org/files/ENCFF407YHS/@@download/ENCFF407YHS.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF129VTP bigBed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF831YRJ 12856680 ENCODE Processing Pipeline 8d488eb250e9c3acddf11ef5fd5d9cf4 https://www.encodeproject.org/files/ENCFF129VTP/@@download/ENCFF129VTP.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF506BOO bigBed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF259LBW 12830338 ENCODE Processing Pipeline 62c7eed8b335bb2d1e5f33a7aae5ad6f https://www.encodeproject.org/files/ENCFF506BOO/@@download/ENCFF506BOO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF980OTF bed narrowPeak optimal idr thresholded peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF259LBW, ENCFF321NAD, ENCFF419RSJ, ENCFF831YRJ 336871 ENCODE Processing Pipeline f11f801fec8a4dffdffdcaa6a6d53e52 https://www.encodeproject.org/files/ENCFF980OTF/@@download/ENCFF980OTF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF060MHT bigBed narrowPeak conservative idr thresholded peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF407YHS 668476 ENCODE Processing Pipeline 68146e44fc8ce2f7a918f2f073c60b04 https://www.encodeproject.org/files/ENCFF060MHT/@@download/ENCFF060MHT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF785ZAY bigBed narrowPeak optimal idr thresholded peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF980OTF 669979 ENCODE Processing Pipeline c98e5b4e99d06533e62f90c912c99094 https://www.encodeproject.org/files/ENCFF785ZAY/@@download/ENCFF785ZAY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF382YWX bigWig signal p-value ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF126EYL, ENCFF203ABR 1354009238 ENCODE Processing Pipeline 0d46d1aa81041785e6eac4a0033f9945 https://www.encodeproject.org/files/ENCFF382YWX/@@download/ENCFF382YWX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF384STM bigWig signal p-value ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF249WJP 1127280625 ENCODE Processing Pipeline 3c6db9a00a1f965825532babced3bd39 https://www.encodeproject.org/files/ENCFF384STM/@@download/ENCFF384STM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF285ARC bigWig signal p-value ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126EYL, ENCFF203ABR, ENCFF249WJP 1460759481 ENCODE Processing Pipeline 6488817da3246366867bfb892fe36018 https://www.encodeproject.org/files/ENCFF285ARC/@@download/ENCFF285ARC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF111HZX bigWig fold change over control ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF126EYL, ENCFF203ABR 878027772 ENCODE Processing Pipeline 610535ce177703a8aafec5b13434d946 https://www.encodeproject.org/files/ENCFF111HZX/@@download/ENCFF111HZX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399MNP bigWig fold change over control ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF249WJP 811746803 ENCODE Processing Pipeline 80715a9a6ae168940b634db6a76e15c8 https://www.encodeproject.org/files/ENCFF399MNP/@@download/ENCFF399MNP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF017BUZ bigWig fold change over control ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126EYL, ENCFF203ABR, ENCFF249WJP 1370352676 ENCODE Processing Pipeline c28ba8329910bd11a53adfb5a937e384 https://www.encodeproject.org/files/ENCFF017BUZ/@@download/ENCFF017BUZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF360QSJ bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF126EYL, ENCFF203ABR 6751382 ENCODE Processing Pipeline f02e9930599d8201b2a66cc5243ca53f https://www.encodeproject.org/files/ENCFF360QSJ/@@download/ENCFF360QSJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF876KIS bigBed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF215GXV 12713755 ENCODE Processing Pipeline ec75b4ec034d3466d6b57549f2da94fd https://www.encodeproject.org/files/ENCFF876KIS/@@download/ENCFF876KIS.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF796AOK bigBed narrowPeak optimal idr thresholded peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF099CBG 680709 ENCODE Processing Pipeline 0f4a624fde0f730c17f5a9175e0af012 https://www.encodeproject.org/files/ENCFF796AOK/@@download/ENCFF796AOK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF215GXV bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF249WJP 6867836 ENCODE Processing Pipeline 5af186408e02febbaefb4e4ffed8e65a https://www.encodeproject.org/files/ENCFF215GXV/@@download/ENCFF215GXV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670VGU bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126EYL, ENCFF203ABR, ENCFF249WJP 7184931 ENCODE Processing Pipeline c1fd8253d427ece288fefea1077aa249 https://www.encodeproject.org/files/ENCFF670VGU/@@download/ENCFF670VGU.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF665YEH bigBed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF360QSJ 13040891 ENCODE Processing Pipeline 3c427324d338df068c885b4398bc460f https://www.encodeproject.org/files/ENCFF665YEH/@@download/ENCFF665YEH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099CBG bed narrowPeak optimal idr thresholded peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF215GXV, ENCFF360QSJ, ENCFF670VGU 323418 ENCODE Processing Pipeline 53566a9b3029223914026dab1563b320 https://www.encodeproject.org/files/ENCFF099CBG/@@download/ENCFF099CBG.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF616ORV bigBed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF670VGU 12821091 ENCODE Processing Pipeline de08ee583c10a1e7fb406125d929bd01 https://www.encodeproject.org/files/ENCFF616ORV/@@download/ENCFF616ORV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF393ZLC fastq reads ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF911ICF 3572836024 Michael Snyder, Stanford 117801533caaf2e96ffaf4f59933427a SRA:SRR6214200 https://www.encodeproject.org/files/ENCFF393ZLC/@@download/ENCFF393ZLC.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity ENCFF678PWC fastq reads ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF627YOB 3235657658 Michael Snyder, Stanford 1f7b31d2cdffa8901007e9f54ffcc170 SRA:SRR6214199 https://www.encodeproject.org/files/ENCFF678PWC/@@download/ENCFF678PWC.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity ENCFF627YOB fastq reads ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF678PWC 3546874393 Michael Snyder, Stanford 0fbd0b16dec09e6dc753dfac31b12af0 SRA:SRR6214199 https://www.encodeproject.org/files/ENCFF627YOB/@@download/ENCFF627YOB.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity ENCFF911ICF fastq reads ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF393ZLC 2926449638 Michael Snyder, Stanford c01d031479282a5b7f4026409b0e60ed SRA:SRR6214200 https://www.encodeproject.org/files/ENCFF911ICF/@@download/ENCFF911ICF.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity ENCFF572ZQQ bam unfiltered alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF627YOB, ENCFF643CGH, ENCFF678PWC 6091055817 ENCODE Processing Pipeline 89a5339b3a21d4e453ba2813521635ca https://www.encodeproject.org/files/ENCFF572ZQQ/@@download/ENCFF572ZQQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF291YBA bam unfiltered alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF393ZLC, ENCFF643CGH, ENCFF911ICF 5635087263 ENCODE Processing Pipeline 366c950ad1b6c0a0233caa1058539173 https://www.encodeproject.org/files/ENCFF291YBA/@@download/ENCFF291YBA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF550JXQ bam unfiltered alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF627YOB, ENCFF678PWC, ENCFF807MUK 6088574060 ENCODE Processing Pipeline 6b73ae2a6e3047aac42fe8405d65c708 https://www.encodeproject.org/files/ENCFF550JXQ/@@download/ENCFF550JXQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF295BSY bam unfiltered alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF393ZLC, ENCFF807MUK, ENCFF911ICF 5633592441 ENCODE Processing Pipeline 64e2d1330f75db7a816b00facc0c4354 https://www.encodeproject.org/files/ENCFF295BSY/@@download/ENCFF295BSY.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF036IOO bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF393ZLC, ENCFF643CGH, ENCFF911ICF 3260076884 ENCODE Processing Pipeline 5c4d88055d36f0e822b99b792c29217e https://www.encodeproject.org/files/ENCFF036IOO/@@download/ENCFF036IOO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF464PKB bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF393ZLC, ENCFF807MUK, ENCFF911ICF 3257607311 ENCODE Processing Pipeline e12739e65a2d534fce721213e87da6b3 https://www.encodeproject.org/files/ENCFF464PKB/@@download/ENCFF464PKB.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF117LCX bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF627YOB, ENCFF678PWC, ENCFF807MUK 4042046673 ENCODE Processing Pipeline 776297779d610ab370631e785f4cde17 https://www.encodeproject.org/files/ENCFF117LCX/@@download/ENCFF117LCX.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF358HOW bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF627YOB, ENCFF643CGH, ENCFF678PWC 4045351895 ENCODE Processing Pipeline 5fab3ec07a99cb0567ebe5f977bd61c1 https://www.encodeproject.org/files/ENCFF358HOW/@@download/ENCFF358HOW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF645OKI bigBed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF513RYM 13132242 ENCODE Processing Pipeline 3188eb273db83b48a8b35354e4eff18e https://www.encodeproject.org/files/ENCFF645OKI/@@download/ENCFF645OKI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF443HME bigBed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF215LBC 12914012 ENCODE Processing Pipeline 1104a932316f8cdc398d4949795fba1a https://www.encodeproject.org/files/ENCFF443HME/@@download/ENCFF443HME.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF461DTF bigWig signal p-value ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF117LCX, ENCFF160VXC 1041286276 ENCODE Processing Pipeline ddce5b0a3050c2357d1013efedeb1da8 https://www.encodeproject.org/files/ENCFF461DTF/@@download/ENCFF461DTF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF671OVE bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF117LCX, ENCFF160VXC 7000743 ENCODE Processing Pipeline 6128a1faa54737510c43c78ce33a8341 https://www.encodeproject.org/files/ENCFF671OVE/@@download/ENCFF671OVE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF513RYM bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF464PKB, ENCFF834TUP 7019864 ENCODE Processing Pipeline 8a4ba87bbb665cd7592881e04722644b https://www.encodeproject.org/files/ENCFF513RYM/@@download/ENCFF513RYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF215LBC bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF117LCX, ENCFF160VXC, ENCFF464PKB, ENCFF834TUP 7247453 ENCODE Processing Pipeline 80089c9088b36cf66fd54bf9a024a8e7 https://www.encodeproject.org/files/ENCFF215LBC/@@download/ENCFF215LBC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF704GEC bigBed narrowPeak conservative idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF578SWL 872680 ENCODE Processing Pipeline 93c352bbe8105a39ef01bb4b6c333376 https://www.encodeproject.org/files/ENCFF704GEC/@@download/ENCFF704GEC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF896ZXR bigWig signal p-value ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF117LCX, ENCFF160VXC, ENCFF464PKB, ENCFF834TUP 1805275412 ENCODE Processing Pipeline 7fa217d77d0128be48a0c817e1f7f2f6 https://www.encodeproject.org/files/ENCFF896ZXR/@@download/ENCFF896ZXR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF722YBQ bigWig fold change over control ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF117LCX, ENCFF160VXC 1352296634 ENCODE Processing Pipeline 3228a9f0ee78d3505ea04d0a1cac73f2 https://www.encodeproject.org/files/ENCFF722YBQ/@@download/ENCFF722YBQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF193MBE bigWig fold change over control ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF464PKB, ENCFF834TUP 1260557879 ENCODE Processing Pipeline 8f77a530ba45144a8e3f441e3fd7f304 https://www.encodeproject.org/files/ENCFF193MBE/@@download/ENCFF193MBE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF127ASJ bigBed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF671OVE 13054861 ENCODE Processing Pipeline fb19c583b398bf3264d2d78d79b5a660 https://www.encodeproject.org/files/ENCFF127ASJ/@@download/ENCFF127ASJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF973OME bed narrowPeak optimal idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF215LBC, ENCFF513RYM, ENCFF671OVE 404380 ENCODE Processing Pipeline 19ef8e287c2b6736403247c2b5842fef https://www.encodeproject.org/files/ENCFF973OME/@@download/ENCFF973OME.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF754NOL bigWig signal p-value ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF464PKB, ENCFF834TUP 1116139457 ENCODE Processing Pipeline a7f32906c8c5574cd61c8372e080a5a0 https://www.encodeproject.org/files/ENCFF754NOL/@@download/ENCFF754NOL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF205WHE bigWig fold change over control ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF117LCX, ENCFF160VXC, ENCFF464PKB, ENCFF834TUP 2240720591 ENCODE Processing Pipeline befc786b9b3758b2713a63727d8d6ad0 https://www.encodeproject.org/files/ENCFF205WHE/@@download/ENCFF205WHE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF578SWL bed narrowPeak conservative idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF215LBC, ENCFF513RYM, ENCFF671OVE 357006 ENCODE Processing Pipeline 1c89e99464115b04700766624858774e https://www.encodeproject.org/files/ENCFF578SWL/@@download/ENCFF578SWL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF060WRW bigBed narrowPeak optimal idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF973OME 962859 ENCODE Processing Pipeline 7bb91e6f0184d0b0f1c774fc36be8ee3 https://www.encodeproject.org/files/ENCFF060WRW/@@download/ENCFF060WRW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF804HFO bigWig signal p-value ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF358HOW, ENCFF790TAN 1166814669 ENCODE Processing Pipeline d5d687daec37beda9160c14b84e82813 https://www.encodeproject.org/files/ENCFF804HFO/@@download/ENCFF804HFO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF450IBL bigWig signal p-value ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF036IOO, ENCFF712WXB 1238980674 ENCODE Processing Pipeline bedea026bba091a0ec8c159557d183eb https://www.encodeproject.org/files/ENCFF450IBL/@@download/ENCFF450IBL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF501PKI bigWig signal p-value ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF036IOO, ENCFF358HOW, ENCFF712WXB, ENCFF790TAN 1925573263 ENCODE Processing Pipeline 121f9a8e9a2df1a84d194fd09a8cd4dd https://www.encodeproject.org/files/ENCFF501PKI/@@download/ENCFF501PKI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF980SFN bigWig fold change over control ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF358HOW, ENCFF790TAN 1357514208 ENCODE Processing Pipeline 12a25a727cdab791aa703bf187c2c0dd https://www.encodeproject.org/files/ENCFF980SFN/@@download/ENCFF980SFN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF038GFD bigWig fold change over control ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF036IOO, ENCFF712WXB 1248803864 ENCODE Processing Pipeline 671cea7eb34a0838472015c3fb724d21 https://www.encodeproject.org/files/ENCFF038GFD/@@download/ENCFF038GFD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF665LAS bigWig fold change over control ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF036IOO, ENCFF358HOW, ENCFF712WXB, ENCFF790TAN 2232836750 ENCODE Processing Pipeline dab0a5f09802f1130b0acb4d24570754 https://www.encodeproject.org/files/ENCFF665LAS/@@download/ENCFF665LAS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF506MLA bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF358HOW, ENCFF790TAN 7007806 ENCODE Processing Pipeline e7ab81cf77f80f93ab12adba474b1ab4 https://www.encodeproject.org/files/ENCFF506MLA/@@download/ENCFF506MLA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF197KEG bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF036IOO, ENCFF712WXB 7011676 ENCODE Processing Pipeline 25da779ebf1630e3d426a9f118431db1 https://www.encodeproject.org/files/ENCFF197KEG/@@download/ENCFF197KEG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF540KLM bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF036IOO, ENCFF358HOW, ENCFF712WXB, ENCFF790TAN 7253030 ENCODE Processing Pipeline af5fe5f2849bfb651fb4411852ab8619 https://www.encodeproject.org/files/ENCFF540KLM/@@download/ENCFF540KLM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF911ZDH bigBed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF506MLA 13072478 ENCODE Processing Pipeline 88cf9bf68769ce0f7622d1139fb10e29 https://www.encodeproject.org/files/ENCFF911ZDH/@@download/ENCFF911ZDH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF997YPX bigBed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF197KEG 13131854 ENCODE Processing Pipeline d6d7c45451f1d4871071882343572319 https://www.encodeproject.org/files/ENCFF997YPX/@@download/ENCFF997YPX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF349DNC bigBed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF540KLM 12928388 ENCODE Processing Pipeline a3bc15dc650a652db1e76379235d3cea https://www.encodeproject.org/files/ENCFF349DNC/@@download/ENCFF349DNC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF596TWD bed narrowPeak conservative idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF197KEG, ENCFF419RSJ, ENCFF506MLA, ENCFF540KLM 358929 ENCODE Processing Pipeline 95c6309ea56b3edfdbe5a4f16bedc7aa https://www.encodeproject.org/files/ENCFF596TWD/@@download/ENCFF596TWD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF378XFW bigBed narrowPeak conservative idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF596TWD 879043 ENCODE Processing Pipeline 478cd9064d249a3872d5b295694d9949 https://www.encodeproject.org/files/ENCFF378XFW/@@download/ENCFF378XFW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF454QQD bed narrowPeak optimal idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF197KEG, ENCFF419RSJ, ENCFF506MLA, ENCFF540KLM 409477 ENCODE Processing Pipeline 772a82f2af4913c70907f14868bbe9d7 https://www.encodeproject.org/files/ENCFF454QQD/@@download/ENCFF454QQD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF501YVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF454QQD 975201 ENCODE Processing Pipeline b00c8be2160f9820af64a5fe1b897495 https://www.encodeproject.org/files/ENCFF501YVJ/@@download/ENCFF501YVJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF009OJF bam unfiltered alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 50 ENCFF516GOL, ENCFF807MUK 1098827875 ENCODE Processing Pipeline 968ad78b952c76f8539ce860132785f7 https://www.encodeproject.org/files/ENCFF009OJF/@@download/ENCFF009OJF.bam hg19 released low read depth, missing genetic modification characterization ENCFF256CWL bam unfiltered alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 50 ENCFF652IDC, ENCFF807MUK 1446823520 ENCODE Processing Pipeline 28426b49dba38452d491becd667406ce https://www.encodeproject.org/files/ENCFF256CWL/@@download/ENCFF256CWL.bam hg19 released low read depth, missing genetic modification characterization ENCFF516GOL fastq reads ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1005829869 Kevin White, UChicago ea6295872952de8e13949d4ed643335d SRA:SRR6213521 https://www.encodeproject.org/files/ENCFF516GOL/@@download/ENCFF516GOL.fastq.gz Illumina HiSeq 2500 /files/ENCFF080EHD/, /files/ENCFF165PUN/ released low read depth, missing genetic modification characterization ENCFF652IDC fastq reads ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1335169925 Kevin White, UChicago 9769b2964c82e79a992541e8749e17a2 SRA:SRR6213520 https://www.encodeproject.org/files/ENCFF652IDC/@@download/ENCFF652IDC.fastq.gz Illumina HiSeq 2500 /files/ENCFF080EHD/, /files/ENCFF165PUN/ released low read depth, missing genetic modification characterization ENCFF479XRX bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 50 ENCFF652IDC, ENCFF807MUK 1138556853 ENCODE Processing Pipeline f6b028f702cb3f8cec326d38f8b66fdd https://www.encodeproject.org/files/ENCFF479XRX/@@download/ENCFF479XRX.bam hg19 released low read depth, missing genetic modification characterization ENCFF783CXK bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 50 ENCFF516GOL, ENCFF807MUK 864675233 ENCODE Processing Pipeline 0cb4ad96e32a5ae8bd5d109f04fe1054 https://www.encodeproject.org/files/ENCFF783CXK/@@download/ENCFF783CXK.bam hg19 released low read depth, missing genetic modification characterization ENCFF049ICF bigWig signal p-value ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF479XRX, ENCFF503YHD 684753952 ENCODE Processing Pipeline 6ca9d65a5aef5ecb1967d6331be94a99 https://www.encodeproject.org/files/ENCFF049ICF/@@download/ENCFF049ICF.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF414DFZ bigWig signal p-value ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF503YHD, ENCFF783CXK 503401537 ENCODE Processing Pipeline eba942d34cdb588a7b98497997560b17 https://www.encodeproject.org/files/ENCFF414DFZ/@@download/ENCFF414DFZ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF509LKC bigWig signal p-value ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF479XRX, ENCFF503YHD, ENCFF783CXK 819159117 ENCODE Processing Pipeline 741b86d41c4aac211900b4c28083f625 https://www.encodeproject.org/files/ENCFF509LKC/@@download/ENCFF509LKC.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF660MCI bigWig fold change over control ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF479XRX, ENCFF503YHD 699547308 ENCODE Processing Pipeline 8bce40cb56ae06cee09cfe6619d8255d https://www.encodeproject.org/files/ENCFF660MCI/@@download/ENCFF660MCI.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF185CUQ bigWig fold change over control ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF503YHD, ENCFF783CXK 604209323 ENCODE Processing Pipeline 438d15e39eff36416de11a75c9745a21 https://www.encodeproject.org/files/ENCFF185CUQ/@@download/ENCFF185CUQ.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF821EOT bigBed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF603BTL 12423545 ENCODE Processing Pipeline 64c2affce9884a407b81f83289202fda https://www.encodeproject.org/files/ENCFF821EOT/@@download/ENCFF821EOT.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF946EOR bigWig fold change over control ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF479XRX, ENCFF503YHD, ENCFF783CXK 940813364 ENCODE Processing Pipeline fc793b93a7fd1037c331765424a2d5e4 https://www.encodeproject.org/files/ENCFF946EOR/@@download/ENCFF946EOR.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF590LRH bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF479XRX, ENCFF503YHD 7126045 ENCODE Processing Pipeline c4dd620d8cb73921a71e311ff1644875 https://www.encodeproject.org/files/ENCFF590LRH/@@download/ENCFF590LRH.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF603BTL bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF503YHD, ENCFF783CXK 7009038 ENCODE Processing Pipeline 4d3412ad428852982210ca66bd1e37a2 https://www.encodeproject.org/files/ENCFF603BTL/@@download/ENCFF603BTL.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF748XDB bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF479XRX, ENCFF503YHD, ENCFF783CXK 7269760 ENCODE Processing Pipeline c5fac7fdbbf59314cecc01c9477e6fbf https://www.encodeproject.org/files/ENCFF748XDB/@@download/ENCFF748XDB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF289ZGP bigBed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF748XDB 12331921 ENCODE Processing Pipeline 8f6232153fee28a88bfea07431460973 https://www.encodeproject.org/files/ENCFF289ZGP/@@download/ENCFF289ZGP.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF336YHV bigBed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF590LRH 12473230 ENCODE Processing Pipeline c0d313873a8c87eff5574993f3615f75 https://www.encodeproject.org/files/ENCFF336YHV/@@download/ENCFF336YHV.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF591QMG bam unfiltered alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF652IDC 1450210980 ENCODE Processing Pipeline 1953fff7724945a81a2c98feee986a73 https://www.encodeproject.org/files/ENCFF591QMG/@@download/ENCFF591QMG.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF072MZF bam unfiltered alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 50 ENCFF516GOL, ENCFF643CGH 1101084341 ENCODE Processing Pipeline 625dec524cc2b762c6ae1e1fe75b4ca6 https://www.encodeproject.org/files/ENCFF072MZF/@@download/ENCFF072MZF.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF540ZTB bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 50 ENCFF516GOL, ENCFF643CGH 864322626 ENCODE Processing Pipeline 6905976d24991e396c9701347b4c18b9 https://www.encodeproject.org/files/ENCFF540ZTB/@@download/ENCFF540ZTB.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF666EIZ bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF652IDC 1138158002 ENCODE Processing Pipeline e13bd171fbcc1a5c5a27619b1cc1d176 https://www.encodeproject.org/files/ENCFF666EIZ/@@download/ENCFF666EIZ.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF657FLG bigWig signal p-value ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF609HLC, ENCFF666EIZ 603830412 ENCODE Processing Pipeline 709ecd18852fd068261742a686dc743a https://www.encodeproject.org/files/ENCFF657FLG/@@download/ENCFF657FLG.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF085CHM bigWig signal p-value ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF540ZTB, ENCFF609HLC 512788926 ENCODE Processing Pipeline b3ab08c45c7c5f00ebd8b7cafb4d51f8 https://www.encodeproject.org/files/ENCFF085CHM/@@download/ENCFF085CHM.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF693PZX bigWig signal p-value ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF540ZTB, ENCFF609HLC, ENCFF666EIZ 816216584 ENCODE Processing Pipeline 117223b5547cc14853d0aad572ac4c55 https://www.encodeproject.org/files/ENCFF693PZX/@@download/ENCFF693PZX.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF177JJR bigWig fold change over control ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF609HLC, ENCFF666EIZ 700899929 ENCODE Processing Pipeline 22a0d9811e30cf739637a75a01e3597a https://www.encodeproject.org/files/ENCFF177JJR/@@download/ENCFF177JJR.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF834WWY bigWig fold change over control ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF540ZTB, ENCFF609HLC 615760309 ENCODE Processing Pipeline 26c3551d8c0dfcc371638374f0be2c30 https://www.encodeproject.org/files/ENCFF834WWY/@@download/ENCFF834WWY.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF340UTP bigWig fold change over control ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF540ZTB, ENCFF609HLC, ENCFF666EIZ 934868078 ENCODE Processing Pipeline 73640de32f41f720242e002ace516b1e https://www.encodeproject.org/files/ENCFF340UTP/@@download/ENCFF340UTP.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF827OBX bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF540ZTB, ENCFF609HLC 6920685 ENCODE Processing Pipeline 68f2d01dba737b3b6e74223ed81289de https://www.encodeproject.org/files/ENCFF827OBX/@@download/ENCFF827OBX.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF836SVL bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF609HLC, ENCFF666EIZ 7045570 ENCODE Processing Pipeline 2cc3e244bc2ab1cbd8537d2d33cf1377 https://www.encodeproject.org/files/ENCFF836SVL/@@download/ENCFF836SVL.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF903TXM bigBed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF295TTE 12334237 ENCODE Processing Pipeline c53ae21925d9bd506ad6da2e43169315 https://www.encodeproject.org/files/ENCFF903TXM/@@download/ENCFF903TXM.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF295TTE bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF540ZTB, ENCFF609HLC, ENCFF666EIZ 7236886 ENCODE Processing Pipeline 7c385676ff72f84b83c12d4fad863ecb https://www.encodeproject.org/files/ENCFF295TTE/@@download/ENCFF295TTE.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF645NRG bigBed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF827OBX 12422380 ENCODE Processing Pipeline 9459f5a75462617b84ecd9e109a0be34 https://www.encodeproject.org/files/ENCFF645NRG/@@download/ENCFF645NRG.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF740DZV bigBed narrowPeak conservative idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF003MTQ 816410 ENCODE Processing Pipeline bea424c44ac6eac0ae1830cc1d6c7fcc https://www.encodeproject.org/files/ENCFF740DZV/@@download/ENCFF740DZV.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF231KUA bigBed narrowPeak optimal idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF817ARM 984869 ENCODE Processing Pipeline 0279c8c81c3370e802832f06e19d12ea https://www.encodeproject.org/files/ENCFF231KUA/@@download/ENCFF231KUA.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF003MTQ bed narrowPeak conservative idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF295TTE, ENCFF419RSJ, ENCFF827OBX, ENCFF836SVL 393067 ENCODE Processing Pipeline 5e03d2e650a7f229a61df5ae8907700b https://www.encodeproject.org/files/ENCFF003MTQ/@@download/ENCFF003MTQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF591GVI bigBed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF836SVL 12486875 ENCODE Processing Pipeline 3de762ccdad773ab84a1bcba5d6c2c84 https://www.encodeproject.org/files/ENCFF591GVI/@@download/ENCFF591GVI.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF817ARM bed narrowPeak optimal idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF295TTE, ENCFF419RSJ, ENCFF827OBX, ENCFF836SVL 401684 ENCODE Processing Pipeline 89c7f08b01d55a381b810fbd45dd5481 https://www.encodeproject.org/files/ENCFF817ARM/@@download/ENCFF817ARM.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF219ZRU bed narrowPeak conservative idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF590LRH, ENCFF603BTL, ENCFF748XDB 325491 ENCODE Processing Pipeline 51e3bb743f954592f2e9b14ce8f1ef29 https://www.encodeproject.org/files/ENCFF219ZRU/@@download/ENCFF219ZRU.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF309MYM bigBed narrowPeak conservative idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF219ZRU 586862 ENCODE Processing Pipeline eaf77892a2c65150112fe2ba071b8347 https://www.encodeproject.org/files/ENCFF309MYM/@@download/ENCFF309MYM.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF396GUH bed narrowPeak optimal idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF590LRH, ENCFF603BTL, ENCFF748XDB 328085 ENCODE Processing Pipeline c0f9021391f0142e862d9de195e2fccc https://www.encodeproject.org/files/ENCFF396GUH/@@download/ENCFF396GUH.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF087HQG bigBed narrowPeak optimal idr thresholded peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF396GUH 590103 ENCODE Processing Pipeline f2ae56591e340d9df9251eba9aa33fa2 https://www.encodeproject.org/files/ENCFF087HQG/@@download/ENCFF087HQG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF023QAR fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF785LRF 3707078511 Michael Snyder, Stanford 9284868ca2401b3d850d14d2006c9559 SRA:SRR6214030 https://www.encodeproject.org/files/ENCFF023QAR/@@download/ENCFF023QAR.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF263DDP fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF861XUI 2077219288 Michael Snyder, Stanford 0021e434d06314005cbebded4f9c0273 SRA:SRR6214029 https://www.encodeproject.org/files/ENCFF263DDP/@@download/ENCFF263DDP.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF785LRF fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF023QAR 3095909210 Michael Snyder, Stanford be4ad2be42e67718bca432d089f77dbf SRA:SRR6214030 https://www.encodeproject.org/files/ENCFF785LRF/@@download/ENCFF785LRF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF861XUI fastq reads ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF263DDP 2498555758 Michael Snyder, Stanford 64603ce7eb38ef61cafaa71fd752cc6d SRA:SRR6214029 https://www.encodeproject.org/files/ENCFF861XUI/@@download/ENCFF861XUI.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF604LZU bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF807MUK, ENCFF861XUI 4491969166 ENCODE Processing Pipeline ba83209f750abbc02ce49ec76a1e6238 https://www.encodeproject.org/files/ENCFF604LZU/@@download/ENCFF604LZU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF950ZBS bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF807MUK, ENCFF861XUI 2587570927 ENCODE Processing Pipeline e792c277302c3b16f675d829839cf135 https://www.encodeproject.org/files/ENCFF950ZBS/@@download/ENCFF950ZBS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF258PBX bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF643CGH, ENCFF785LRF 6507933758 ENCODE Processing Pipeline decc5003f5f484bee9b3375f7dd6ef11 https://www.encodeproject.org/files/ENCFF258PBX/@@download/ENCFF258PBX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF601CNB bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF785LRF, ENCFF807MUK 6506712541 ENCODE Processing Pipeline 784c6e6bf42e7b2fa01cc2e52510b24d https://www.encodeproject.org/files/ENCFF601CNB/@@download/ENCFF601CNB.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF831ANK bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF643CGH, ENCFF785LRF 3039290727 ENCODE Processing Pipeline 6a9ce81f18df2772801560aa3db834aa https://www.encodeproject.org/files/ENCFF831ANK/@@download/ENCFF831ANK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF699MBA bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF785LRF, ENCFF807MUK 3035032348 ENCODE Processing Pipeline f62b4a1207f05ca657fbd0db8356c5ed https://www.encodeproject.org/files/ENCFF699MBA/@@download/ENCFF699MBA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF115DER bam unfiltered alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF643CGH, ENCFF861XUI 4492991086 ENCODE Processing Pipeline b9474936328b1d0c63475347d2b5b770 https://www.encodeproject.org/files/ENCFF115DER/@@download/ENCFF115DER.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF159BQG bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF643CGH, ENCFF861XUI 2591621597 ENCODE Processing Pipeline bbc3fe3f43c2dfec4bb5be7539221da0 https://www.encodeproject.org/files/ENCFF159BQG/@@download/ENCFF159BQG.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF104GOQ bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 912336281 ENCODE Processing Pipeline f13c63967c5c0ff85cdba94e70907f33 https://www.encodeproject.org/files/ENCFF104GOQ/@@download/ENCFF104GOQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF823GZT bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF271HBJ 12977553 ENCODE Processing Pipeline cfc2d1696fdbebb33be17fd91e659c47 https://www.encodeproject.org/files/ENCFF823GZT/@@download/ENCFF823GZT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF826BGL bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF699MBA, ENCFF901CND, ENCFF950ZBS 1579189543 ENCODE Processing Pipeline c249b3445b690182a48dd02c858d2e89 https://www.encodeproject.org/files/ENCFF826BGL/@@download/ENCFF826BGL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF271HBJ bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF699MBA, ENCFF901CND, ENCFF950ZBS 7173201 ENCODE Processing Pipeline 19438d81ccf2ca3edeb8e6f6d23b6993 https://www.encodeproject.org/files/ENCFF271HBJ/@@download/ENCFF271HBJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF874DBO bigBed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF444FZU 1155697 ENCODE Processing Pipeline 384fef61add51387aad41c1aa34fc283 https://www.encodeproject.org/files/ENCFF874DBO/@@download/ENCFF874DBO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF960HDA bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 977189912 ENCODE Processing Pipeline 533993152c09aa092ec2e50323cc94cd https://www.encodeproject.org/files/ENCFF960HDA/@@download/ENCFF960HDA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF914CTT bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF592WAL, ENCFF699MBA, ENCFF901CND, ENCFF950ZBS 1860489538 ENCODE Processing Pipeline 56f0282dad94926c42dfde85ad4c8ddc https://www.encodeproject.org/files/ENCFF914CTT/@@download/ENCFF914CTT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF564DIM bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF855RKW 13223167 ENCODE Processing Pipeline 49dc98c9c7d3e04c12d7ee677fa8d379 https://www.encodeproject.org/files/ENCFF564DIM/@@download/ENCFF564DIM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF456YII bed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF040LOQ, ENCFF271HBJ, ENCFF855RKW 635087 ENCODE Processing Pipeline d393dfe420253ec3d9141425df3f5a5b https://www.encodeproject.org/files/ENCFF456YII/@@download/ENCFF456YII.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF976YJV bigBed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF456YII 1378207 ENCODE Processing Pipeline ef14f99529327d01bb453bcfc1afcf3e https://www.encodeproject.org/files/ENCFF976YJV/@@download/ENCFF976YJV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF202KTR bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 896837967 ENCODE Processing Pipeline d495db03ecd06e09675dd45ba873c3a8 https://www.encodeproject.org/files/ENCFF202KTR/@@download/ENCFF202KTR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF040LOQ bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 6545854 ENCODE Processing Pipeline e0d3f12c791753d1349de45edbfde9f7 https://www.encodeproject.org/files/ENCFF040LOQ/@@download/ENCFF040LOQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF444FZU bed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF040LOQ, ENCFF271HBJ, ENCFF855RKW 512344 ENCODE Processing Pipeline d043d4d8050cece9f235e8cb422bb9c8 https://www.encodeproject.org/files/ENCFF444FZU/@@download/ENCFF444FZU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF340FPE bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 998180448 ENCODE Processing Pipeline 66b44a5352acb815d7bbbae7b9eaca72 https://www.encodeproject.org/files/ENCFF340FPE/@@download/ENCFF340FPE.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF855RKW bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 6488095 ENCODE Processing Pipeline d4dfe31150b5ecc1afaad5c0b16c4845 https://www.encodeproject.org/files/ENCFF855RKW/@@download/ENCFF855RKW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF311NGT bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF040LOQ 13249990 ENCODE Processing Pipeline d0d7b957a30412cacb44bcc58229553c https://www.encodeproject.org/files/ENCFF311NGT/@@download/ENCFF311NGT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF828AZJ bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF831ANK 879424927 ENCODE Processing Pipeline 7e90180eba653c8fd34b5a2e1c0741e5 https://www.encodeproject.org/files/ENCFF828AZJ/@@download/ENCFF828AZJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF344NUU bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF159BQG, ENCFF322NTO, ENCFF666ATR, ENCFF831ANK 1860410067 ENCODE Processing Pipeline fab3ae12142bcb45ad49acfa2d8ac2d3 https://www.encodeproject.org/files/ENCFF344NUU/@@download/ENCFF344NUU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF030NUR bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF036YVM 13230408 ENCODE Processing Pipeline 86dce8a803bac5b8468512d1aeefaba4 https://www.encodeproject.org/files/ENCFF030NUR/@@download/ENCFF030NUR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF771LQC bigBed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF199EDM 1167536 ENCODE Processing Pipeline 2ce28523833f658836650b4a073c9e98 https://www.encodeproject.org/files/ENCFF771LQC/@@download/ENCFF771LQC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF560BOJ bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF159BQG, ENCFF322NTO 913118370 ENCODE Processing Pipeline 48a1b42cae9423ba967c87caacceb6a9 https://www.encodeproject.org/files/ENCFF560BOJ/@@download/ENCFF560BOJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF298AIX bed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF036YVM, ENCFF087UQB, ENCFF419RSJ, ENCFF478WIS 639464 ENCODE Processing Pipeline 32405453d0d042d69827e46fb12abe14 https://www.encodeproject.org/files/ENCFF298AIX/@@download/ENCFF298AIX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF754CHY bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF159BQG, ENCFF322NTO 896590233 ENCODE Processing Pipeline 5652a6933bde283d4fe4f0ebaff7a402 https://www.encodeproject.org/files/ENCFF754CHY/@@download/ENCFF754CHY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF941PXI bigWig signal p-value ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF159BQG, ENCFF322NTO, ENCFF666ATR, ENCFF831ANK 1622117175 ENCODE Processing Pipeline ed2ce231aabc580407757bb80ba21351 https://www.encodeproject.org/files/ENCFF941PXI/@@download/ENCFF941PXI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF478WIS bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF159BQG, ENCFF322NTO, ENCFF666ATR, ENCFF831ANK 7203373 ENCODE Processing Pipeline a32813ff4be27ff8e602ec553d7bd370 https://www.encodeproject.org/files/ENCFF478WIS/@@download/ENCFF478WIS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF343CPM bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF478WIS 13013438 ENCODE Processing Pipeline ab079e62b5bb644ca35109eb21dabf8b https://www.encodeproject.org/files/ENCFF343CPM/@@download/ENCFF343CPM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF199EDM bed narrowPeak conservative idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF036YVM, ENCFF087UQB, ENCFF419RSJ, ENCFF478WIS 520370 ENCODE Processing Pipeline 97bf249f53a1322c506df698239e157b https://www.encodeproject.org/files/ENCFF199EDM/@@download/ENCFF199EDM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF265GOV bigBed narrowPeak optimal idr thresholded peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF298AIX 1385457 ENCODE Processing Pipeline b97994ce4e72274b04878b93ce22aa90 https://www.encodeproject.org/files/ENCFF265GOV/@@download/ENCFF265GOV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF438TTB bigWig fold change over control ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF831ANK 976405301 ENCODE Processing Pipeline ee92b9d892e9e919320bf098e746669d https://www.encodeproject.org/files/ENCFF438TTB/@@download/ENCFF438TTB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF087UQB bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF831ANK 6565054 ENCODE Processing Pipeline aaf603edfc4bddefd0dd0074c73d2f09 https://www.encodeproject.org/files/ENCFF087UQB/@@download/ENCFF087UQB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF036YVM bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF159BQG, ENCFF322NTO 6491397 ENCODE Processing Pipeline 93219b3b2b8a62092e8b096f21feef4a https://www.encodeproject.org/files/ENCFF036YVM/@@download/ENCFF036YVM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF894ODM bigBed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF087UQB 13280688 ENCODE Processing Pipeline 03173b6ee043407b936397b06d508c22 https://www.encodeproject.org/files/ENCFF894ODM/@@download/ENCFF894ODM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF008RFJ bam unfiltered alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF697GAP, ENCFF713DPD, ENCFF807MUK 2345056306 ENCODE Processing Pipeline 7c44d3a5a5d7442115f770982d63a51f https://www.encodeproject.org/files/ENCFF008RFJ/@@download/ENCFF008RFJ.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF380FZW bam unfiltered alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF987WCU 1267519682 ENCODE Processing Pipeline d20626d392ec79ba25056e6159d13b12 https://www.encodeproject.org/files/ENCFF380FZW/@@download/ENCFF380FZW.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF987WCU fastq reads ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1138884493 Kevin White, UChicago 5ef4bce63f6cdd073a682323efecc83d SRA:SRR6213148 https://www.encodeproject.org/files/ENCFF987WCU/@@download/ENCFF987WCU.fastq.gz Illumina HiSeq 2500 /files/ENCFF414HWA/, /files/ENCFF894RGF/ released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF697GAP fastq reads ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 956566987 Kevin White, UChicago 295647d1e56a5716506b7af6dbcb0fdc SRA:SRR6213149 https://www.encodeproject.org/files/ENCFF697GAP/@@download/ENCFF697GAP.fastq.gz Illumina HiSeq 2500 /files/ENCFF414HWA/, /files/ENCFF894RGF/ released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF713DPD fastq reads ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1212610370 Kevin White, UChicago d4c7436b2321c8d92a3874029e4f4c52 SRA:SRR6213150 https://www.encodeproject.org/files/ENCFF713DPD/@@download/ENCFF713DPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF414HWA/, /files/ENCFF894RGF/ released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF488CVL bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF987WCU 981547841 ENCODE Processing Pipeline 010f5a39443b4dd4fcaa8b4585a6c7d3 https://www.encodeproject.org/files/ENCFF488CVL/@@download/ENCFF488CVL.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF826XVE bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF697GAP, ENCFF713DPD, ENCFF807MUK 1812676020 ENCODE Processing Pipeline d5742737643a0c14652790a1984e395a https://www.encodeproject.org/files/ENCFF826XVE/@@download/ENCFF826XVE.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF725HXM bigWig signal p-value ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF488CVL, ENCFF744LSD 611707082 ENCODE Processing Pipeline 4ddc7405cbc2f49b400c8f4cea7d5a19 https://www.encodeproject.org/files/ENCFF725HXM/@@download/ENCFF725HXM.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF945UYC bigWig fold change over control ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF488CVL, ENCFF744LSD 561717817 ENCODE Processing Pipeline 30b55ab46ea0dcc168cf4f097c0d384b https://www.encodeproject.org/files/ENCFF945UYC/@@download/ENCFF945UYC.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF231UMI bam unfiltered alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF987WCU 1270871114 ENCODE Processing Pipeline 0a1ac220cef4a8e15a69eae9b3c971b5 https://www.encodeproject.org/files/ENCFF231UMI/@@download/ENCFF231UMI.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF046AMS bam unfiltered alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF697GAP, ENCFF713DPD 2351814276 ENCODE Processing Pipeline 76ee214bef35f99217ec8e10ea3b6da4 https://www.encodeproject.org/files/ENCFF046AMS/@@download/ENCFF046AMS.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF070MZX bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF987WCU 981111910 ENCODE Processing Pipeline 81305870c43be29e863c269a6b5969e2 https://www.encodeproject.org/files/ENCFF070MZX/@@download/ENCFF070MZX.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF795XBH bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF697GAP, ENCFF713DPD 1811969789 ENCODE Processing Pipeline c0cd99a89d1c076024147d74e1480b85 https://www.encodeproject.org/files/ENCFF795XBH/@@download/ENCFF795XBH.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF291WAT bigWig signal p-value ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF070MZX, ENCFF795UVG 590719070 ENCODE Processing Pipeline 982598092733a3ab98213ab4d45c7e31 https://www.encodeproject.org/files/ENCFF291WAT/@@download/ENCFF291WAT.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF005XBE bigWig signal p-value ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF795UVG, ENCFF795XBH 838659108 ENCODE Processing Pipeline e3a50c5ef6bf14f99aa0e7a2324e1d1c https://www.encodeproject.org/files/ENCFF005XBE/@@download/ENCFF005XBE.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF138ZEY bigWig signal p-value ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF070MZX, ENCFF795UVG, ENCFF795XBH 823369387 ENCODE Processing Pipeline 6f94e8be8d02af544ebb2ff0440eddaf https://www.encodeproject.org/files/ENCFF138ZEY/@@download/ENCFF138ZEY.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF775UAE bigWig fold change over control ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF795UVG, ENCFF795XBH 839815793 ENCODE Processing Pipeline 16b1a1b113ac24564da3f00c0875f9a5 https://www.encodeproject.org/files/ENCFF775UAE/@@download/ENCFF775UAE.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF603MHB bigWig fold change over control ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF070MZX, ENCFF795UVG 557491388 ENCODE Processing Pipeline 1a244ac34ec46e223b121d956416e285 https://www.encodeproject.org/files/ENCFF603MHB/@@download/ENCFF603MHB.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF791FIG bigWig fold change over control ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF070MZX, ENCFF795UVG, ENCFF795XBH 1079506310 ENCODE Processing Pipeline f8250371e0e652ac85e6e029629892de https://www.encodeproject.org/files/ENCFF791FIG/@@download/ENCFF791FIG.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF963OMH bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF795UVG, ENCFF795XBH 7060584 ENCODE Processing Pipeline c27b230a997f55b6d03766cadf4d692f https://www.encodeproject.org/files/ENCFF963OMH/@@download/ENCFF963OMH.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF215XBE bigBed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF963OMH 12532734 ENCODE Processing Pipeline e0957f4d43366daa8f0a130066e97738 https://www.encodeproject.org/files/ENCFF215XBE/@@download/ENCFF215XBE.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF261YCK bed narrowPeak conservative idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF100GOE, ENCFF419RSJ, ENCFF515FAV, ENCFF963OMH 343232 ENCODE Processing Pipeline 4afb866025b1d03b43c03d677989f767 https://www.encodeproject.org/files/ENCFF261YCK/@@download/ENCFF261YCK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF354QYM bed narrowPeak optimal idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF100GOE, ENCFF419RSJ, ENCFF515FAV, ENCFF963OMH 413663 ENCODE Processing Pipeline fff52e8bd25e2bdfe21098cee0a7dc56 https://www.encodeproject.org/files/ENCFF354QYM/@@download/ENCFF354QYM.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF788FNM bigBed narrowPeak optimal idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF354QYM 1018950 ENCODE Processing Pipeline 52eab11479bf29420192e4ecad68087c https://www.encodeproject.org/files/ENCFF788FNM/@@download/ENCFF788FNM.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF515FAV bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF070MZX, ENCFF795UVG 6619030 ENCODE Processing Pipeline 48366b3c2ed51cac2f10f78eb4b0d06c https://www.encodeproject.org/files/ENCFF515FAV/@@download/ENCFF515FAV.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF100GOE bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF070MZX, ENCFF795UVG, ENCFF795XBH 7270021 ENCODE Processing Pipeline b40b5b35d6fcf3c17038e1f5d77a4d4f https://www.encodeproject.org/files/ENCFF100GOE/@@download/ENCFF100GOE.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF323JTA bigBed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF515FAV 12643666 ENCODE Processing Pipeline 972502799fb151882e8ad7a0be1e2356 https://www.encodeproject.org/files/ENCFF323JTA/@@download/ENCFF323JTA.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF324XOX bigBed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF100GOE 12502712 ENCODE Processing Pipeline ac3f23015d25a1004dc74cbac1282eaa https://www.encodeproject.org/files/ENCFF324XOX/@@download/ENCFF324XOX.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF678HTJ bigBed narrowPeak conservative idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF261YCK 876682 ENCODE Processing Pipeline 2c3ac14a638762402bf7339e803696f8 https://www.encodeproject.org/files/ENCFF678HTJ/@@download/ENCFF678HTJ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF957CIS bigWig signal p-value ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF744LSD, ENCFF826XVE 833239663 ENCODE Processing Pipeline 361406affe6a3d6edcfc790b9fe3c23f https://www.encodeproject.org/files/ENCFF957CIS/@@download/ENCFF957CIS.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF419SJF bigWig signal p-value ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF488CVL, ENCFF744LSD, ENCFF826XVE 816555171 ENCODE Processing Pipeline 2f408cbdee1474655ce09e04a4a24397 https://www.encodeproject.org/files/ENCFF419SJF/@@download/ENCFF419SJF.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF173YRZ bigBed narrowPeak conservative idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF179TYN 874945 ENCODE Processing Pipeline 1bb759c587138ce0673c80df126e5cfa https://www.encodeproject.org/files/ENCFF173YRZ/@@download/ENCFF173YRZ.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF462NRC bigWig fold change over control ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF488CVL, ENCFF744LSD, ENCFF826XVE 1067497114 ENCODE Processing Pipeline 95fca62a89a55465e53fcba909be9135 https://www.encodeproject.org/files/ENCFF462NRC/@@download/ENCFF462NRC.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF630TKH bigBed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF250VQN 12649287 ENCODE Processing Pipeline 538668d0d8d4f777f08ddc325871d560 https://www.encodeproject.org/files/ENCFF630TKH/@@download/ENCFF630TKH.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF179TYN bed narrowPeak conservative idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF250VQN, ENCFF676RSO, ENCFF833HIY 343223 ENCODE Processing Pipeline bd96e0762553afef00b3610bcbf102cd https://www.encodeproject.org/files/ENCFF179TYN/@@download/ENCFF179TYN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF250VQN bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF488CVL, ENCFF744LSD 6611423 ENCODE Processing Pipeline 2b3b093652493683ee15e2cad32627d2 https://www.encodeproject.org/files/ENCFF250VQN/@@download/ENCFF250VQN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF701MXF bed narrowPeak optimal idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF250VQN, ENCFF676RSO, ENCFF833HIY 415746 ENCODE Processing Pipeline 708b867532b9183badb53e580e240bf4 https://www.encodeproject.org/files/ENCFF701MXF/@@download/ENCFF701MXF.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF036NUD bigBed narrowPeak optimal idr thresholded peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF701MXF 1022165 ENCODE Processing Pipeline 02b60fd1ea44b570bd62f34651270b21 https://www.encodeproject.org/files/ENCFF036NUD/@@download/ENCFF036NUD.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF993DAV bigWig fold change over control ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF744LSD, ENCFF826XVE 836489046 ENCODE Processing Pipeline c5ecfa06b030f81b188d0235b573982a https://www.encodeproject.org/files/ENCFF993DAV/@@download/ENCFF993DAV.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF833HIY bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF488CVL, ENCFF744LSD, ENCFF826XVE 7268911 ENCODE Processing Pipeline 21906adc3fe5725ecb68b1b4f7718061 https://www.encodeproject.org/files/ENCFF833HIY/@@download/ENCFF833HIY.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF235GIP bigBed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF676RSO 12528414 ENCODE Processing Pipeline 2e19148d6bcc7bd9b797eb3aea836e02 https://www.encodeproject.org/files/ENCFF235GIP/@@download/ENCFF235GIP.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF917ZSW bigBed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF833HIY 12493871 ENCODE Processing Pipeline 4ea05ae028af3f227ddecf6ddf28aa38 https://www.encodeproject.org/files/ENCFF917ZSW/@@download/ENCFF917ZSW.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF676RSO bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF744LSD, ENCFF826XVE 7060269 ENCODE Processing Pipeline ed76e1e7d3291d5c21336cc02f9ee3e3 https://www.encodeproject.org/files/ENCFF676RSO/@@download/ENCFF676RSO.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF305XXH fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF433QIM 2616853626 Michael Snyder, Stanford c7b34648d7155dd3074bba633da68ba0 SRA:SRR6213408 https://www.encodeproject.org/files/ENCFF305XXH/@@download/ENCFF305XXH.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF845GWE fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF442RZV 2844853456 Michael Snyder, Stanford c597e6104f303302f33267adebd0e9d9 SRA:SRR6213407 https://www.encodeproject.org/files/ENCFF845GWE/@@download/ENCFF845GWE.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF442RZV fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF845GWE 3425590554 Michael Snyder, Stanford a7c82827b7beb049f0e6e3c1295cbae4 SRA:SRR6213407 https://www.encodeproject.org/files/ENCFF442RZV/@@download/ENCFF442RZV.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF433QIM fastq reads ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF305XXH 3121335821 Michael Snyder, Stanford 9750d798f7b165fb2bce21efc67d4290 SRA:SRR6213408 https://www.encodeproject.org/files/ENCFF433QIM/@@download/ENCFF433QIM.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF297GLO bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF807MUK 5573782795 ENCODE Processing Pipeline e1631f3b8b8ac702099297fbc7ad2fa5 https://www.encodeproject.org/files/ENCFF297GLO/@@download/ENCFF297GLO.bam hg19 released mild to moderate bottlenecking ENCFF787OQV bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF807MUK 3421135760 ENCODE Processing Pipeline 0414cd62d04d70cfd5bd5839fdc42c44 https://www.encodeproject.org/files/ENCFF787OQV/@@download/ENCFF787OQV.bam hg19 released mild to moderate bottlenecking ENCFF382CMG bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF807MUK, ENCFF845GWE 6183437655 ENCODE Processing Pipeline 57c9d473c28123c743bfb1a333cbe72e https://www.encodeproject.org/files/ENCFF382CMG/@@download/ENCFF382CMG.bam hg19 released mild to moderate bottlenecking ENCFF370FGY bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF643CGH 5574972123 ENCODE Processing Pipeline b680a9c0a71f8f2d33dd6a8d6ca0ccab https://www.encodeproject.org/files/ENCFF370FGY/@@download/ENCFF370FGY.bam GRCh38 released mild to moderate bottlenecking ENCFF658QNN bam unfiltered alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF643CGH, ENCFF845GWE 6186231523 ENCODE Processing Pipeline 20955025f3a280f3e8ab9fae25b0ae9f https://www.encodeproject.org/files/ENCFF658QNN/@@download/ENCFF658QNN.bam GRCh38 released mild to moderate bottlenecking ENCFF022YLX bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF643CGH 3424980701 ENCODE Processing Pipeline f14fc394f8e2598375a54c24438827c0 https://www.encodeproject.org/files/ENCFF022YLX/@@download/ENCFF022YLX.bam GRCh38 released mild to moderate bottlenecking ENCFF437AZE bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF807MUK, ENCFF845GWE 3930183507 ENCODE Processing Pipeline df145612e540ba293db33ee3c8bea95f https://www.encodeproject.org/files/ENCFF437AZE/@@download/ENCFF437AZE.bam hg19 released mild to moderate bottlenecking ENCFF768YUH bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF643CGH, ENCFF845GWE 3934138658 ENCODE Processing Pipeline 2051c048236233f4529b630f5d99eed0 https://www.encodeproject.org/files/ENCFF768YUH/@@download/ENCFF768YUH.bam GRCh38 released mild to moderate bottlenecking ENCFF583CFC bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF437AZE, ENCFF592WAL, ENCFF787OQV, ENCFF901CND 1607569930 ENCODE Processing Pipeline 4a0d23369fc12375da6b80f3e54c85bf https://www.encodeproject.org/files/ENCFF583CFC/@@download/ENCFF583CFC.bigWig hg19 released mild to moderate bottlenecking ENCFF545WCL bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 1067362723 ENCODE Processing Pipeline cb9b6e5b4171c285c3c2ce6bd258e671 https://www.encodeproject.org/files/ENCFF545WCL/@@download/ENCFF545WCL.bigWig hg19 released mild to moderate bottlenecking ENCFF177IKE bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 1077376782 ENCODE Processing Pipeline 23380b1b1021ff6ff21a6002d5143a5c https://www.encodeproject.org/files/ENCFF177IKE/@@download/ENCFF177IKE.bigWig hg19 released mild to moderate bottlenecking ENCFF349MPF bed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF150YMV, ENCFF496AHM, ENCFF943NIH 812699 ENCODE Processing Pipeline 811b29846fc1fc213785d04af598d88f https://www.encodeproject.org/files/ENCFF349MPF/@@download/ENCFF349MPF.bed.gz hg19 released mild to moderate bottlenecking ENCFF547EHX bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 1072920220 ENCODE Processing Pipeline 60cb8454ead52360cb4f5a889ae3ded0 https://www.encodeproject.org/files/ENCFF547EHX/@@download/ENCFF547EHX.bigWig hg19 released mild to moderate bottlenecking ENCFF837MVI bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 1123235192 ENCODE Processing Pipeline 0838bcf7dbd897ee5e86e0146f2fd06e https://www.encodeproject.org/files/ENCFF837MVI/@@download/ENCFF837MVI.bigWig hg19 released mild to moderate bottlenecking ENCFF682POX bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF437AZE, ENCFF592WAL, ENCFF787OQV, ENCFF901CND 2064910183 ENCODE Processing Pipeline ddabad592a3d1b67cf9f227ed0420fe2 https://www.encodeproject.org/files/ENCFF682POX/@@download/ENCFF682POX.bigWig hg19 released mild to moderate bottlenecking ENCFF150YMV bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 6855199 ENCODE Processing Pipeline 299024ce5c68aeb309d8c186b174ff61 https://www.encodeproject.org/files/ENCFF150YMV/@@download/ENCFF150YMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF851UFF bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF943NIH 13249549 ENCODE Processing Pipeline ce1362efd19573471393fdedfd83f4b5 https://www.encodeproject.org/files/ENCFF851UFF/@@download/ENCFF851UFF.bigBed hg19 released mild to moderate bottlenecking ENCFF112HEG bed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF150YMV, ENCFF496AHM, ENCFF943NIH 714952 ENCODE Processing Pipeline 750e265cd53447f148a1300f0821ab9c https://www.encodeproject.org/files/ENCFF112HEG/@@download/ENCFF112HEG.bed.gz hg19 released mild to moderate bottlenecking ENCFF043YIP bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF150YMV 13194714 ENCODE Processing Pipeline 7665991d19aad55d9cc7076c5beca709 https://www.encodeproject.org/files/ENCFF043YIP/@@download/ENCFF043YIP.bigBed hg19 released mild to moderate bottlenecking ENCFF285NQW bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF496AHM 13034013 ENCODE Processing Pipeline 38c14de5c062635b14d346bad036b51a https://www.encodeproject.org/files/ENCFF285NQW/@@download/ENCFF285NQW.bigBed hg19 released mild to moderate bottlenecking ENCFF943NIH bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 6948107 ENCODE Processing Pipeline f702ceabbaa2e142282da390c2da8676 https://www.encodeproject.org/files/ENCFF943NIH/@@download/ENCFF943NIH.bed.gz hg19 released mild to moderate bottlenecking ENCFF196BMD bigBed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF112HEG 1589597 ENCODE Processing Pipeline 19ed2040b3606149cb569c0769a3c3bc https://www.encodeproject.org/files/ENCFF196BMD/@@download/ENCFF196BMD.bigBed hg19 released mild to moderate bottlenecking ENCFF496AHM bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF437AZE, ENCFF592WAL, ENCFF787OQV, ENCFF901CND 7251552 ENCODE Processing Pipeline 2c9b0d6fa2bcc9f861044a1d764a24a5 https://www.encodeproject.org/files/ENCFF496AHM/@@download/ENCFF496AHM.bed.gz hg19 released mild to moderate bottlenecking ENCFF859QJJ bigBed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF349MPF 1765074 ENCODE Processing Pipeline 528d75b264c7c086a267f23b4eb45a16 https://www.encodeproject.org/files/ENCFF859QJJ/@@download/ENCFF859QJJ.bigBed hg19 released mild to moderate bottlenecking ENCFF564BXE bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF768YUH 1122141925 ENCODE Processing Pipeline 269293804ce5913ceafb2ec59817bc6e https://www.encodeproject.org/files/ENCFF564BXE/@@download/ENCFF564BXE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF793IOP bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF022YLX, ENCFF322NTO, ENCFF666ATR, ENCFF768YUH 2030707033 ENCODE Processing Pipeline 3e87be1d5a46d40b7c6cdf15eb0a614c https://www.encodeproject.org/files/ENCFF793IOP/@@download/ENCFF793IOP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF204MUZ bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF022YLX, ENCFF322NTO 1128652222 ENCODE Processing Pipeline a7449c3c1851167bd95d0f0d5ca94455 https://www.encodeproject.org/files/ENCFF204MUZ/@@download/ENCFF204MUZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF526DXV bigWig fold change over control ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF022YLX, ENCFF322NTO 1066320089 ENCODE Processing Pipeline dfa41dd02d5da07952457e0129eb203e https://www.encodeproject.org/files/ENCFF526DXV/@@download/ENCFF526DXV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF832LAP bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF768YUH 941372453 ENCODE Processing Pipeline ecabe3386a6df23ee800e1153036c186 https://www.encodeproject.org/files/ENCFF832LAP/@@download/ENCFF832LAP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF363IAI bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF543BES 13201128 ENCODE Processing Pipeline 853d49832aca1e9cfff7157223d38fc9 https://www.encodeproject.org/files/ENCFF363IAI/@@download/ENCFF363IAI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF143SLG bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF536XOF 13044236 ENCODE Processing Pipeline 276a75eb2a61f9b29bbe41af9b21aef5 https://www.encodeproject.org/files/ENCFF143SLG/@@download/ENCFF143SLG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF944TWP bigBed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF771IAW 1761091 ENCODE Processing Pipeline f0dbb9bc54b78b8ec447b658cf64a2e9 https://www.encodeproject.org/files/ENCFF944TWP/@@download/ENCFF944TWP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF771IAW bed narrowPeak optimal idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF505CUP, ENCFF536XOF, ENCFF543BES 810433 ENCODE Processing Pipeline 8f0d5fc4559f0600c287d6ee0bf76f26 https://www.encodeproject.org/files/ENCFF771IAW/@@download/ENCFF771IAW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF366REJ bigWig signal p-value ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF022YLX, ENCFF322NTO, ENCFF666ATR, ENCFF768YUH 1811164555 ENCODE Processing Pipeline 865b49fcb324e8799567e053ff1c9eb8 https://www.encodeproject.org/files/ENCFF366REJ/@@download/ENCFF366REJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF733BVX bed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF505CUP, ENCFF536XOF, ENCFF543BES 711977 ENCODE Processing Pipeline 458f197145574732257a48e9f588d33c https://www.encodeproject.org/files/ENCFF733BVX/@@download/ENCFF733BVX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF536XOF bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF022YLX, ENCFF322NTO, ENCFF666ATR, ENCFF768YUH 7254006 ENCODE Processing Pipeline fee04f2286a024d0c3fb55586ab778b8 https://www.encodeproject.org/files/ENCFF536XOF/@@download/ENCFF536XOF.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF939VLA bigBed narrowPeak conservative idr thresholded peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF733BVX 1587755 ENCODE Processing Pipeline 7fb24e70fb53a0e08a00a9da7405181e https://www.encodeproject.org/files/ENCFF939VLA/@@download/ENCFF939VLA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF505CUP bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF666ATR, ENCFF768YUH 6980742 ENCODE Processing Pipeline 198fd8a81b35cb4a9a327d9880fcd04d https://www.encodeproject.org/files/ENCFF505CUP/@@download/ENCFF505CUP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF543BES bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF022YLX, ENCFF322NTO 6856970 ENCODE Processing Pipeline b765e83b313e1ccfcce581dcdb7353e5 https://www.encodeproject.org/files/ENCFF543BES/@@download/ENCFF543BES.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF724EWR bigBed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF505CUP 13286039 ENCODE Processing Pipeline bc752a42da1b837a74bb27b58745765d https://www.encodeproject.org/files/ENCFF724EWR/@@download/ENCFF724EWR.bigBed GRCh38 released mild to moderate bottlenecking ENCFF505FEG fastq reads ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF295MZS 2349255037 Michael Snyder, Stanford ee74543a4df87c1cb3b54d48da5424f5 SRA:SRR5112276 https://www.encodeproject.org/files/ENCFF505FEG/@@download/ENCFF505FEG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF951RZS fastq reads ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF520VNB 1495207536 Michael Snyder, Stanford cbbc350c0306355b1b7d805a5aee5462 SRA:SRR5112275 https://www.encodeproject.org/files/ENCFF951RZS/@@download/ENCFF951RZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF520VNB fastq reads ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF951RZS 1488581512 Michael Snyder, Stanford 1e7476d3ca934590c798d4aabfe4fa35 SRA:SRR5112275 https://www.encodeproject.org/files/ENCFF520VNB/@@download/ENCFF520VNB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF295MZS fastq reads ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF505FEG 2330115836 Michael Snyder, Stanford 8dd66c61ed2b5f6dbb45cc6e28124ee6 SRA:SRR5112276 https://www.encodeproject.org/files/ENCFF295MZS/@@download/ENCFF295MZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF497AFF bam unfiltered alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF295MZS, ENCFF505FEG, ENCFF807MUK 5212980454 ENCODE Processing Pipeline efddb2ff6634d75222d490f598db0f3c https://www.encodeproject.org/files/ENCFF497AFF/@@download/ENCFF497AFF.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF149TOU bam unfiltered alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF520VNB, ENCFF807MUK, ENCFF951RZS 3430372475 ENCODE Processing Pipeline 69a7617a2c71b11b562ea4872f8abdc7 https://www.encodeproject.org/files/ENCFF149TOU/@@download/ENCFF149TOU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF634UXF bam unfiltered alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF520VNB, ENCFF643CGH, ENCFF951RZS 3435096692 ENCODE Processing Pipeline ce5c94aecd66723e834369bc61452cb4 https://www.encodeproject.org/files/ENCFF634UXF/@@download/ENCFF634UXF.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF400DIH bam unfiltered alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF295MZS, ENCFF505FEG, ENCFF643CGH 5219256089 ENCODE Processing Pipeline 65626ccc2cbf99e0518605e275ea7d57 https://www.encodeproject.org/files/ENCFF400DIH/@@download/ENCFF400DIH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF802UVT bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF520VNB, ENCFF643CGH, ENCFF951RZS 3026274935 ENCODE Processing Pipeline 1b7129bba64e76b44e5d93cbb5555b63 https://www.encodeproject.org/files/ENCFF802UVT/@@download/ENCFF802UVT.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF340TMD bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF520VNB, ENCFF807MUK, ENCFF951RZS 3024751188 ENCODE Processing Pipeline 39ae9413b1083b09eed0f434351c83ec https://www.encodeproject.org/files/ENCFF340TMD/@@download/ENCFF340TMD.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF326GSV bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF295MZS, ENCFF505FEG, ENCFF643CGH 4494761456 ENCODE Processing Pipeline 11fdd5b13a3038e08bd1e36b76ba562d https://www.encodeproject.org/files/ENCFF326GSV/@@download/ENCFF326GSV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF911YIA bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF295MZS, ENCFF505FEG, ENCFF807MUK 4493759332 ENCODE Processing Pipeline 685037cd95a87959467be35da6237591 https://www.encodeproject.org/files/ENCFF911YIA/@@download/ENCFF911YIA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF779COH bigWig signal p-value ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF911YIA 1389592434 ENCODE Processing Pipeline 06300f6e393e2e5b4cb4b5b13b8c8a88 https://www.encodeproject.org/files/ENCFF779COH/@@download/ENCFF779COH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF385EOV bigWig signal p-value ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340TMD, ENCFF911YIA 1780813438 ENCODE Processing Pipeline 44830d8fe422c37e11052a7a5865dd07 https://www.encodeproject.org/files/ENCFF385EOV/@@download/ENCFF385EOV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF276LLS bigWig signal p-value ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340TMD 1197024578 ENCODE Processing Pipeline a88794849220095e6e6b0c1ee3012461 https://www.encodeproject.org/files/ENCFF276LLS/@@download/ENCFF276LLS.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF164BZY bigWig fold change over control ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF911YIA 1371772174 ENCODE Processing Pipeline f0a01a2ade59da3c0a73d2e1939b573e https://www.encodeproject.org/files/ENCFF164BZY/@@download/ENCFF164BZY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF338RMH bigWig fold change over control ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340TMD 1143025960 ENCODE Processing Pipeline 0395b0951a32358d85beb68622e948c8 https://www.encodeproject.org/files/ENCFF338RMH/@@download/ENCFF338RMH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF558XJA bigWig fold change over control ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340TMD, ENCFF911YIA 1806332884 ENCODE Processing Pipeline a45871269b028d37d6dba098efe653e0 https://www.encodeproject.org/files/ENCFF558XJA/@@download/ENCFF558XJA.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF789TTE bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF911YIA 6405804 ENCODE Processing Pipeline 9c9ad676ed43342eab534afd4da9f94b https://www.encodeproject.org/files/ENCFF789TTE/@@download/ENCFF789TTE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF715YVZ bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340TMD 6174699 ENCODE Processing Pipeline 8d96c17be790fec7b3c2c0ee9276e0b9 https://www.encodeproject.org/files/ENCFF715YVZ/@@download/ENCFF715YVZ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF776BTO bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340TMD, ENCFF911YIA 7013744 ENCODE Processing Pipeline 1f690e68ef2ec6fd7bd5fd9586ac5fcc https://www.encodeproject.org/files/ENCFF776BTO/@@download/ENCFF776BTO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF195DIN bigBed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF715YVZ 11307677 ENCODE Processing Pipeline 5229dfa816bf440068420dcc52e9d92f https://www.encodeproject.org/files/ENCFF195DIN/@@download/ENCFF195DIN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF390WAK bigBed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF789TTE 11199096 ENCODE Processing Pipeline 256ad7b5b88de50735cbe5d5b0293c28 https://www.encodeproject.org/files/ENCFF390WAK/@@download/ENCFF390WAK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF840WTQ bigBed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF776BTO 11266431 ENCODE Processing Pipeline ce96d4e77bdc2506263a6f62d386d5d0 https://www.encodeproject.org/files/ENCFF840WTQ/@@download/ENCFF840WTQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF438QDX bed narrowPeak conservative idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF715YVZ, ENCFF776BTO, ENCFF789TTE 12892 ENCODE Processing Pipeline a8f71bdb57f0c99fdf53ad6c1922ab47 https://www.encodeproject.org/files/ENCFF438QDX/@@download/ENCFF438QDX.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF242RHG bigBed narrowPeak conservative idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF438QDX 64548 ENCODE Processing Pipeline d5e8f05d1254a7e19e2fedce3f9e5812 https://www.encodeproject.org/files/ENCFF242RHG/@@download/ENCFF242RHG.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF843TJJ bed narrowPeak optimal idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF715YVZ, ENCFF776BTO, ENCFF789TTE 18563 ENCODE Processing Pipeline 6035b416535319d52c8da2b4d71be47f https://www.encodeproject.org/files/ENCFF843TJJ/@@download/ENCFF843TJJ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF449ZHU bigBed narrowPeak optimal idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF843TJJ 85667 ENCODE Processing Pipeline ca9af9982c0efb04fcccac93102bc675 https://www.encodeproject.org/files/ENCFF449ZHU/@@download/ENCFF449ZHU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF732ZLO bigWig signal p-value ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF326GSV 1362695777 ENCODE Processing Pipeline 63460c74dd2587beb27e0de0abd4c8b8 https://www.encodeproject.org/files/ENCFF732ZLO/@@download/ENCFF732ZLO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF442IDS bigWig signal p-value ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF802UVT 1256927089 ENCODE Processing Pipeline d40af507b5f1f448696a71f15e4e0667 https://www.encodeproject.org/files/ENCFF442IDS/@@download/ENCFF442IDS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF622TRR bigWig signal p-value ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF326GSV, ENCFF802UVT 1491250788 ENCODE Processing Pipeline 78a00e1ed032d8b24100f99eee12aa62 https://www.encodeproject.org/files/ENCFF622TRR/@@download/ENCFF622TRR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF295UFA bigWig fold change over control ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF326GSV 1403668618 ENCODE Processing Pipeline 2b0d7800c7119d9867b16e2945cb2139 https://www.encodeproject.org/files/ENCFF295UFA/@@download/ENCFF295UFA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF670XAO bigWig fold change over control ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF326GSV, ENCFF802UVT 1811038815 ENCODE Processing Pipeline 89292021168c04aa52fc36d4e5e9b452 https://www.encodeproject.org/files/ENCFF670XAO/@@download/ENCFF670XAO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF559KMI bigBed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF361DCX 11306579 ENCODE Processing Pipeline 8441ceeb828f71597b97b0cca73fc36b https://www.encodeproject.org/files/ENCFF559KMI/@@download/ENCFF559KMI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF046APR bigWig fold change over control ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF802UVT 1181759753 ENCODE Processing Pipeline 302af1f7c8f804060c4838300a2cfef4 https://www.encodeproject.org/files/ENCFF046APR/@@download/ENCFF046APR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF602KKP bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF326GSV, ENCFF802UVT 6907305 ENCODE Processing Pipeline 3241d9805f295252035e7cb54da5e4e5 https://www.encodeproject.org/files/ENCFF602KKP/@@download/ENCFF602KKP.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF115CTS bigBed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF250YZT 11197032 ENCODE Processing Pipeline 87cc0354bb125f681034af70a6bcd6c1 https://www.encodeproject.org/files/ENCFF115CTS/@@download/ENCFF115CTS.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF250YZT bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF326GSV 6256381 ENCODE Processing Pipeline 27588d22e9b1247b75b7b449d9197c14 https://www.encodeproject.org/files/ENCFF250YZT/@@download/ENCFF250YZT.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF361DCX bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF802UVT 6037965 ENCODE Processing Pipeline 4a9de0810e9c3d149c33a46e3d823bb3 https://www.encodeproject.org/files/ENCFF361DCX/@@download/ENCFF361DCX.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF600SGH bigBed narrowPeak optimal idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF827YPG 72613 ENCODE Processing Pipeline bbd85762059fab35c423bb5435f3930f https://www.encodeproject.org/files/ENCFF600SGH/@@download/ENCFF600SGH.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF959OTA bigBed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF602KKP 11293078 ENCODE Processing Pipeline 6185de38df21c376674eaf541df8efff https://www.encodeproject.org/files/ENCFF959OTA/@@download/ENCFF959OTA.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF827YPG bed narrowPeak optimal idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF250YZT, ENCFF361DCX, ENCFF419RSJ, ENCFF602KKP 18312 ENCODE Processing Pipeline d5e019b6feaf01ce7811136572c8f0b5 https://www.encodeproject.org/files/ENCFF827YPG/@@download/ENCFF827YPG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF653OAN bed narrowPeak conservative idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF250YZT, ENCFF361DCX, ENCFF419RSJ, ENCFF602KKP 12640 ENCODE Processing Pipeline bd0133f34b130ac4f355f5ecda2ffcdf https://www.encodeproject.org/files/ENCFF653OAN/@@download/ENCFF653OAN.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF404DSC bigBed narrowPeak conservative idr thresholded peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF653OAN 64614 ENCODE Processing Pipeline 1d9b639a5ff50a5f28ac187adc9cd9c4 https://www.encodeproject.org/files/ENCFF404DSC/@@download/ENCFF404DSC.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF953UBF fastq reads ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 1 76 single-ended 2663609294 Bradley Bernstein, Broad 8fcef15d8e6cd188dbd202fd5a377052 SRA:SRR6213508 https://www.encodeproject.org/files/ENCFF953UBF/@@download/ENCFF953UBF.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released borderline replicate concordance, low read depth ENCFF946FEX fastq reads ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 1 76 single-ended 1133980442 Bradley Bernstein, Broad 77105a3d0a6249dbd6e851c32828ccfd SRA:SRR6213509 https://www.encodeproject.org/files/ENCFF946FEX/@@download/ENCFF946FEX.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released borderline replicate concordance, low read depth, inconsistent control read length ENCFF097VKJ bam unfiltered alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF946FEX 940826886 ENCODE Processing Pipeline e2ebb6af937f2d8b41b2873e11442d8e https://www.encodeproject.org/files/ENCFF097VKJ/@@download/ENCFF097VKJ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF028TKL bam unfiltered alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF807MUK, ENCFF946FEX 922428156 ENCODE Processing Pipeline df61802dbc1b48d629aa0d30a28a4198 https://www.encodeproject.org/files/ENCFF028TKL/@@download/ENCFF028TKL.bam hg19 released borderline replicate concordance, low read depth ENCFF426USZ bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF946FEX 637349923 ENCODE Processing Pipeline 656f5d408fbdac522f48939e88fc8883 https://www.encodeproject.org/files/ENCFF426USZ/@@download/ENCFF426USZ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF278RDV bam unfiltered alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF807MUK, ENCFF953UBF 1878464827 ENCODE Processing Pipeline 6a73fb7c7283cdf06b987adb70e6042a https://www.encodeproject.org/files/ENCFF278RDV/@@download/ENCFF278RDV.bam hg19 released borderline replicate concordance, low read depth ENCFF265KDY bam unfiltered alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF643CGH, ENCFF953UBF 1902168110 ENCODE Processing Pipeline fbf855c8599a8ce2856b5ac2c917c812 https://www.encodeproject.org/files/ENCFF265KDY/@@download/ENCFF265KDY.bam GRCh38 released borderline replicate concordance, low read depth ENCFF215XQU bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF807MUK, ENCFF946FEX 637696853 ENCODE Processing Pipeline 8a70dce185c0e757e6b65fb9ced5b62f https://www.encodeproject.org/files/ENCFF215XQU/@@download/ENCFF215XQU.bam hg19 released borderline replicate concordance, low read depth ENCFF946XIU bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF643CGH, ENCFF953UBF 1264305922 ENCODE Processing Pipeline 64f46a40ee66f656f522e26ffe0cb113 https://www.encodeproject.org/files/ENCFF946XIU/@@download/ENCFF946XIU.bam GRCh38 released borderline replicate concordance, low read depth ENCFF191IPI bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF807MUK, ENCFF953UBF 1264815384 ENCODE Processing Pipeline 5ca873319fb3138b3fcbc17c75107a5d https://www.encodeproject.org/files/ENCFF191IPI/@@download/ENCFF191IPI.bam hg19 released borderline replicate concordance, low read depth ENCFF921WEH bigBed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF535RVB 13226413 ENCODE Processing Pipeline cfefd9b785d57ecfe36dc5688527f163 https://www.encodeproject.org/files/ENCFF921WEH/@@download/ENCFF921WEH.bigBed hg19 released borderline replicate concordance, low read depth ENCFF425JMJ bigBed narrowPeak conservative idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF367CAC 276117 ENCODE Processing Pipeline 44a2dcd1fb6bf451f56534f1ccb4b2be https://www.encodeproject.org/files/ENCFF425JMJ/@@download/ENCFF425JMJ.bigBed hg19 released borderline replicate concordance, low read depth ENCFF343QET bigWig signal p-value ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF191IPI, ENCFF705NOL 1156929457 ENCODE Processing Pipeline 842f87c5651da59e47d1fb369609730c https://www.encodeproject.org/files/ENCFF343QET/@@download/ENCFF343QET.bigWig hg19 released borderline replicate concordance, low read depth ENCFF630VYH bigWig signal p-value ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF165PBN, ENCFF191IPI, ENCFF215XQU, ENCFF705NOL 1376812653 ENCODE Processing Pipeline d5131c1e3e0b743ab2800d8737c79f7a https://www.encodeproject.org/files/ENCFF630VYH/@@download/ENCFF630VYH.bigWig hg19 released borderline replicate concordance, low read depth ENCFF388VVC bigWig signal p-value ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF215XQU, ENCFF705NOL 985922978 ENCODE Processing Pipeline 08765c2957c449d4d4aaf9c7f765d1e7 https://www.encodeproject.org/files/ENCFF388VVC/@@download/ENCFF388VVC.bigWig hg19 released borderline replicate concordance, low read depth ENCFF638QKF bigWig fold change over control ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF191IPI, ENCFF705NOL 1160666919 ENCODE Processing Pipeline 69243934114fd2f22f8aff45d47baefd https://www.encodeproject.org/files/ENCFF638QKF/@@download/ENCFF638QKF.bigWig hg19 released borderline replicate concordance, low read depth ENCFF048ORT bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF191IPI, ENCFF705NOL 6699107 ENCODE Processing Pipeline 4b9c3489eb810f59a073ef78246d7dcb https://www.encodeproject.org/files/ENCFF048ORT/@@download/ENCFF048ORT.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF543IPF bigBed narrowPeak optimal idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF665CIR 295823 ENCODE Processing Pipeline 8a908b86f5e392a92450fdf869272dd3 https://www.encodeproject.org/files/ENCFF543IPF/@@download/ENCFF543IPF.bigBed hg19 released borderline replicate concordance, low read depth ENCFF487SGX bigBed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF048ORT 13394351 ENCODE Processing Pipeline 6d73cfa3b516ea003f70cc2b38fc80c1 https://www.encodeproject.org/files/ENCFF487SGX/@@download/ENCFF487SGX.bigBed hg19 released borderline replicate concordance, low read depth ENCFF665CIR bed narrowPeak optimal idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF048ORT, ENCFF535RVB, ENCFF642BLW 93924 ENCODE Processing Pipeline d36751a4faacb8a2dc633effa58b28d1 https://www.encodeproject.org/files/ENCFF665CIR/@@download/ENCFF665CIR.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF604VVS bigWig fold change over control ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF215XQU, ENCFF705NOL 910030443 ENCODE Processing Pipeline 7f8ba793ad5bda14da54c978b22a0894 https://www.encodeproject.org/files/ENCFF604VVS/@@download/ENCFF604VVS.bigWig hg19 released borderline replicate concordance, low read depth ENCFF437LJR bigWig fold change over control ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF165PBN, ENCFF191IPI, ENCFF215XQU, ENCFF705NOL 1461025989 ENCODE Processing Pipeline c6fed54345dd90ff452ec56a40ba8df9 https://www.encodeproject.org/files/ENCFF437LJR/@@download/ENCFF437LJR.bigWig hg19 released borderline replicate concordance, low read depth ENCFF642BLW bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF215XQU, ENCFF705NOL 6722946 ENCODE Processing Pipeline b812d2685d9b6e21627f6dae26f409ad https://www.encodeproject.org/files/ENCFF642BLW/@@download/ENCFF642BLW.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF535RVB bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF165PBN, ENCFF191IPI, ENCFF215XQU, ENCFF705NOL 7150740 ENCODE Processing Pipeline a2a6582af9f19dd73e535573856631f5 https://www.encodeproject.org/files/ENCFF535RVB/@@download/ENCFF535RVB.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF367CAC bed narrowPeak conservative idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF048ORT, ENCFF535RVB, ENCFF642BLW 85374 ENCODE Processing Pipeline 254ca95c670740d2246cf42e8dae4e19 https://www.encodeproject.org/files/ENCFF367CAC/@@download/ENCFF367CAC.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF997XPJ bigBed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF642BLW 13219088 ENCODE Processing Pipeline 1182b03fc46dd6c7c0c8b820366453d2 https://www.encodeproject.org/files/ENCFF997XPJ/@@download/ENCFF997XPJ.bigBed hg19 released borderline replicate concordance, low read depth ENCFF208YEC bigWig fold change over control ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF645CCA, ENCFF943MYJ, ENCFF946XIU 1164349293 ENCODE Processing Pipeline 3733c5097770617797088ebfc3ba2863 https://www.encodeproject.org/files/ENCFF208YEC/@@download/ENCFF208YEC.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF388FUF bigBed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF061OKW 13254876 ENCODE Processing Pipeline b8f13896f94d8cd3ebd257cbf0170b8f https://www.encodeproject.org/files/ENCFF388FUF/@@download/ENCFF388FUF.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF398EKS bigWig signal p-value ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF426USZ, ENCFF645CCA, ENCFF943MYJ, ENCFF946XIU 1436502924 ENCODE Processing Pipeline 3107dc9ffce1e9740356b48e610e8dc5 https://www.encodeproject.org/files/ENCFF398EKS/@@download/ENCFF398EKS.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF288ZVF bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF426USZ, ENCFF645CCA, ENCFF943MYJ 6711907 ENCODE Processing Pipeline 46801027446449adce6e5a00da413ee4 https://www.encodeproject.org/files/ENCFF288ZVF/@@download/ENCFF288ZVF.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF178XJO bigBed narrowPeak optimal idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF736GHL 255994 ENCODE Processing Pipeline 953e6ffb1ccc38f8b4b4a37472ec76e5 https://www.encodeproject.org/files/ENCFF178XJO/@@download/ENCFF178XJO.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF219GCD bigWig fold change over control ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF426USZ, ENCFF645CCA, ENCFF943MYJ 907591504 ENCODE Processing Pipeline 4b19294754359c46bd63425d4c2690a4 https://www.encodeproject.org/files/ENCFF219GCD/@@download/ENCFF219GCD.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF548MPZ bigWig fold change over control ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF426USZ, ENCFF645CCA, ENCFF943MYJ, ENCFF946XIU 1482595738 ENCODE Processing Pipeline e0590fb0f057e5dff5ac1a74bcedb996 https://www.encodeproject.org/files/ENCFF548MPZ/@@download/ENCFF548MPZ.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF181QOQ bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF645CCA, ENCFF943MYJ, ENCFF946XIU 6685809 ENCODE Processing Pipeline 19db09435b111afc99da128bb7c17d00 https://www.encodeproject.org/files/ENCFF181QOQ/@@download/ENCFF181QOQ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF277WMJ bigBed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF288ZVF 13219571 ENCODE Processing Pipeline fdd1f1d9a62066e01a572040e57eeeed https://www.encodeproject.org/files/ENCFF277WMJ/@@download/ENCFF277WMJ.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF823MLT bigWig signal p-value ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF426USZ, ENCFF645CCA, ENCFF943MYJ 1046493564 ENCODE Processing Pipeline bdb7c96d01befaf6dffed6b7df01cd5c https://www.encodeproject.org/files/ENCFF823MLT/@@download/ENCFF823MLT.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF986NQA bigBed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF181QOQ 13414840 ENCODE Processing Pipeline 57e88d8ba524700442f4f87acb1479a5 https://www.encodeproject.org/files/ENCFF986NQA/@@download/ENCFF986NQA.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF587CMS bigWig signal p-value ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF645CCA, ENCFF943MYJ, ENCFF946XIU 1172846917 ENCODE Processing Pipeline 76ec2f0e354519e7e736668de86447f9 https://www.encodeproject.org/files/ENCFF587CMS/@@download/ENCFF587CMS.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF626FDD bed narrowPeak conservative idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF061OKW, ENCFF181QOQ, ENCFF288ZVF, ENCFF419RSJ 81703 ENCODE Processing Pipeline bdc46f4ac529749e8729a17f49189aee https://www.encodeproject.org/files/ENCFF626FDD/@@download/ENCFF626FDD.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF061OKW bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF426USZ, ENCFF645CCA, ENCFF943MYJ, ENCFF946XIU 7114944 ENCODE Processing Pipeline 698c754d3bbdb52c0fc8cfe6ecff7872 https://www.encodeproject.org/files/ENCFF061OKW/@@download/ENCFF061OKW.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF187IZF bigBed narrowPeak conservative idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF626FDD 235390 ENCODE Processing Pipeline 5e2ce89ad1f0c342d495b0cd37e71e7b https://www.encodeproject.org/files/ENCFF187IZF/@@download/ENCFF187IZF.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF736GHL bed narrowPeak optimal idr thresholded peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF061OKW, ENCFF181QOQ, ENCFF288ZVF, ENCFF419RSJ 92812 ENCODE Processing Pipeline f981d616bdc27b8237fd6f86c54e01c0 https://www.encodeproject.org/files/ENCFF736GHL/@@download/ENCFF736GHL.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF014LRW bam unfiltered alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 50 ENCFF282GDI, ENCFF316FIQ, ENCFF807MUK 1158743249 ENCODE Processing Pipeline d7facd705a5d6ed4cf05ad6454f1a0eb https://www.encodeproject.org/files/ENCFF014LRW/@@download/ENCFF014LRW.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF118ZAZ bam unfiltered alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 50 ENCFF740WEF, ENCFF807MUK, ENCFF959EDS 1026979845 ENCODE Processing Pipeline 0bc9bc95d8dad2f33c91c2083bbdb9bc https://www.encodeproject.org/files/ENCFF118ZAZ/@@download/ENCFF118ZAZ.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF959EDS fastq reads ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 596522882 Kevin White, UChicago 71f8811bfdcdf606d853b28a6b9a39d9 SRA:SRR6212935 https://www.encodeproject.org/files/ENCFF959EDS/@@download/ENCFF959EDS.fastq.gz Illumina HiSeq 2000 /files/ENCFF728HNA/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF282GDI fastq reads ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 525477204 Kevin White, UChicago 8c6e12559256a43fe1d7fca698227467 SRA:SRR6212933 https://www.encodeproject.org/files/ENCFF282GDI/@@download/ENCFF282GDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF728HNA/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF316FIQ fastq reads ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 544224692 Kevin White, UChicago 4fdd39114e7555ea4d5fde2c5fd3ad2d SRA:SRR6212934 https://www.encodeproject.org/files/ENCFF316FIQ/@@download/ENCFF316FIQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF728HNA/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF740WEF fastq reads ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 435465272 Kevin White, UChicago 39c4c8b7bdd02242f20fbb236d3032e3 SRA:SRR6212936 https://www.encodeproject.org/files/ENCFF740WEF/@@download/ENCFF740WEF.fastq.gz Illumina HiSeq 2500 /files/ENCFF728HNA/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF775KLX bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 50 ENCFF740WEF, ENCFF807MUK, ENCFF959EDS 636313870 ENCODE Processing Pipeline 5a1a33011b9c6644d347c3183b597cf9 https://www.encodeproject.org/files/ENCFF775KLX/@@download/ENCFF775KLX.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF538HUN bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 50 ENCFF282GDI, ENCFF316FIQ, ENCFF807MUK 899146656 ENCODE Processing Pipeline 22e983fc8763463455df870e9cd8d775 https://www.encodeproject.org/files/ENCFF538HUN/@@download/ENCFF538HUN.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF749WZX bigWig signal p-value ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF243GPO, ENCFF775KLX 359353746 ENCODE Processing Pipeline 813fe84cc8666c2cf522ff40055df45d https://www.encodeproject.org/files/ENCFF749WZX/@@download/ENCFF749WZX.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF953QUA bigWig fold change over control ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF243GPO, ENCFF775KLX 327113773 ENCODE Processing Pipeline 741bf91eee816bd7a5dc0569cae853c9 https://www.encodeproject.org/files/ENCFF953QUA/@@download/ENCFF953QUA.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF140PKT bam unfiltered alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF740WEF, ENCFF959EDS 1029493393 ENCODE Processing Pipeline bcee91c6e513e4c9c56b82ee534c18a3 https://www.encodeproject.org/files/ENCFF140PKT/@@download/ENCFF140PKT.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF540VVE bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF740WEF, ENCFF959EDS 635800967 ENCODE Processing Pipeline bd9dbc61d9f62897d2ba0f9feb5ca215 https://www.encodeproject.org/files/ENCFF540VVE/@@download/ENCFF540VVE.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF933PCZ bam unfiltered alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 50 ENCFF282GDI, ENCFF316FIQ, ENCFF643CGH 1162434859 ENCODE Processing Pipeline ddfec223876cf1b083f034a5f3cc0bf3 https://www.encodeproject.org/files/ENCFF933PCZ/@@download/ENCFF933PCZ.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF503IYW bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 50 ENCFF282GDI, ENCFF316FIQ, ENCFF643CGH 898475923 ENCODE Processing Pipeline 8d2b190c999dbd96ab7f3f04c23f0cf6 https://www.encodeproject.org/files/ENCFF503IYW/@@download/ENCFF503IYW.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF778XTB bigWig signal p-value ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF156EWJ, ENCFF503IYW, ENCFF540VVE 431874889 ENCODE Processing Pipeline 25c7992c079e825298c43e2f09565818 https://www.encodeproject.org/files/ENCFF778XTB/@@download/ENCFF778XTB.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF327FZU bigWig fold change over control ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF156EWJ, ENCFF540VVE 328330350 ENCODE Processing Pipeline 0629e08bcc95a7225fcce099dfdc4faa https://www.encodeproject.org/files/ENCFF327FZU/@@download/ENCFF327FZU.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF346MTL bigWig signal p-value ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF156EWJ, ENCFF540VVE 355487813 ENCODE Processing Pipeline 948006a8e73af284ddc4f51c25966c6c https://www.encodeproject.org/files/ENCFF346MTL/@@download/ENCFF346MTL.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF305POE bigWig signal p-value ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF156EWJ, ENCFF503IYW 414669998 ENCODE Processing Pipeline c158bf66804e1db64d15aec89ea9898d https://www.encodeproject.org/files/ENCFF305POE/@@download/ENCFF305POE.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF913YGS bigWig fold change over control ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF156EWJ, ENCFF503IYW 406457517 ENCODE Processing Pipeline 9529c19e48d97f548d081af24f330c80 https://www.encodeproject.org/files/ENCFF913YGS/@@download/ENCFF913YGS.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF579ALH bigWig fold change over control ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF156EWJ, ENCFF503IYW, ENCFF540VVE 600638587 ENCODE Processing Pipeline 4222807d41dd61979f3b5bdd1fe353b0 https://www.encodeproject.org/files/ENCFF579ALH/@@download/ENCFF579ALH.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF720GTN bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF156EWJ, ENCFF503IYW 6297985 ENCODE Processing Pipeline 8a69653d8232fb391d7e70b377170e74 https://www.encodeproject.org/files/ENCFF720GTN/@@download/ENCFF720GTN.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF319SLL bigBed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF720GTN 12865310 ENCODE Processing Pipeline e702c77506c1e682adbff136e7d039bb https://www.encodeproject.org/files/ENCFF319SLL/@@download/ENCFF319SLL.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF931JER bigBed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF409VRO 12762259 ENCODE Processing Pipeline 6f1105d047850c8be2afd1d9441a7c87 https://www.encodeproject.org/files/ENCFF931JER/@@download/ENCFF931JER.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF514EQE bigBed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF544LQA 12841475 ENCODE Processing Pipeline a286499a082be4701e9d724a85844b9d https://www.encodeproject.org/files/ENCFF514EQE/@@download/ENCFF514EQE.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF409VRO bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF156EWJ, ENCFF540VVE 5976723 ENCODE Processing Pipeline b3c74e0b2d91ec162784edba77f5fca4 https://www.encodeproject.org/files/ENCFF409VRO/@@download/ENCFF409VRO.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF544LQA bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF156EWJ, ENCFF503IYW, ENCFF540VVE 6670094 ENCODE Processing Pipeline 770addb39913f64e89f2ae9ffac3b2c1 https://www.encodeproject.org/files/ENCFF544LQA/@@download/ENCFF544LQA.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF247ULP bed narrowPeak optimal idr thresholded peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF409VRO, ENCFF419RSJ, ENCFF544LQA, ENCFF720GTN 339930 ENCODE Processing Pipeline eabb60aab577cde931169e93d976d842 https://www.encodeproject.org/files/ENCFF247ULP/@@download/ENCFF247ULP.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF259CAT bigBed narrowPeak optimal idr thresholded peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF247ULP 770403 ENCODE Processing Pipeline 0c67a1d9499beaa4df7be9138605b4d6 https://www.encodeproject.org/files/ENCFF259CAT/@@download/ENCFF259CAT.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF815LBC bigWig signal p-value ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF243GPO, ENCFF538HUN 417147892 ENCODE Processing Pipeline 634b803378a601a314454ec2786d0d5a https://www.encodeproject.org/files/ENCFF815LBC/@@download/ENCFF815LBC.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF680DUV bigWig signal p-value ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF243GPO, ENCFF538HUN, ENCFF775KLX 438271046 ENCODE Processing Pipeline 656089b08e1dc2d737a234e6bbd5da7c https://www.encodeproject.org/files/ENCFF680DUV/@@download/ENCFF680DUV.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF563MER bigWig fold change over control ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF243GPO, ENCFF538HUN 409417064 ENCODE Processing Pipeline 5a19cbb585e94976b1a3c630bceb1e88 https://www.encodeproject.org/files/ENCFF563MER/@@download/ENCFF563MER.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF869FIE bigWig fold change over control ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF243GPO, ENCFF538HUN, ENCFF775KLX 602087952 ENCODE Processing Pipeline f86153f5f2d2a15b0a503d747336f52f https://www.encodeproject.org/files/ENCFF869FIE/@@download/ENCFF869FIE.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF472SCD bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF243GPO, ENCFF538HUN 6005884 ENCODE Processing Pipeline 2bab94bc6306c9d1f5743617b8c62493 https://www.encodeproject.org/files/ENCFF472SCD/@@download/ENCFF472SCD.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF260RNL bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF243GPO, ENCFF775KLX 6032960 ENCODE Processing Pipeline f8148af9c2ae9084fb7a592c87363903 https://www.encodeproject.org/files/ENCFF260RNL/@@download/ENCFF260RNL.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF729YPN bigBed narrowPeak optimal idr thresholded peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF721LDD 783718 ENCODE Processing Pipeline 3f4622342bf69b8088291071698527fa https://www.encodeproject.org/files/ENCFF729YPN/@@download/ENCFF729YPN.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF895ZYF bigBed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF260RNL 12759810 ENCODE Processing Pipeline 0e10bffe744399a590e7f7a83829978b https://www.encodeproject.org/files/ENCFF895ZYF/@@download/ENCFF895ZYF.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF221XVT bigBed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF195EMK 12830683 ENCODE Processing Pipeline 4f3e58c141222e24007da53fbe1d4473 https://www.encodeproject.org/files/ENCFF221XVT/@@download/ENCFF221XVT.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF721LDD bed narrowPeak optimal idr thresholded peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF195EMK, ENCFF260RNL, ENCFF472SCD 349948 ENCODE Processing Pipeline ce3af08120a96fe3dd29ae6b4b209bae https://www.encodeproject.org/files/ENCFF721LDD/@@download/ENCFF721LDD.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF195EMK bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF243GPO, ENCFF538HUN, ENCFF775KLX 6703095 ENCODE Processing Pipeline 585759a6549be2f387282f46e4840c70 https://www.encodeproject.org/files/ENCFF195EMK/@@download/ENCFF195EMK.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF800VLX bigBed narrowPeak conservative idr thresholded peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF197LEN 766466 ENCODE Processing Pipeline 05eb6dc25ccdfc1833490b489bb0256e https://www.encodeproject.org/files/ENCFF800VLX/@@download/ENCFF800VLX.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF838ECV bigBed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF472SCD 12791708 ENCODE Processing Pipeline 5f77992f3c65006c01cde42911dc12f3 https://www.encodeproject.org/files/ENCFF838ECV/@@download/ENCFF838ECV.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF197LEN bed narrowPeak conservative idr thresholded peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF195EMK, ENCFF260RNL, ENCFF472SCD 339648 ENCODE Processing Pipeline 624b9ac0430f98821d11e93a624f1483 https://www.encodeproject.org/files/ENCFF197LEN/@@download/ENCFF197LEN.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF040IIC bam unfiltered alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF013LUW, ENCFF807MUK 3483581147 ENCODE Processing Pipeline ff0f6fe2030d51e72670147951f70b88 https://www.encodeproject.org/files/ENCFF040IIC/@@download/ENCFF040IIC.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF983OQT bam unfiltered alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF268EDU, ENCFF775QYL, ENCFF807MUK 2176253207 ENCODE Processing Pipeline 648125f9ffb7072740489db26f933bfc https://www.encodeproject.org/files/ENCFF983OQT/@@download/ENCFF983OQT.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF775QYL fastq reads ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 2 36 single-ended 634157803 Bradley Bernstein, Broad 77519a1de0ab0cac65310327e7674456 https://www.encodeproject.org/files/ENCFF775QYL/@@download/ENCFF775QYL.fastq.gz Illumina HiSeq 2500 /files/ENCFF169TIB/, /files/ENCFF630PTQ/ released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF268EDU fastq reads ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 36 single-ended 842358926 Bradley Bernstein, Broad 649ccccb50ae68405b1156d4f459dfbb https://www.encodeproject.org/files/ENCFF268EDU/@@download/ENCFF268EDU.fastq.gz Illumina HiSeq 2500 /files/ENCFF169TIB/, /files/ENCFF630PTQ/ released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF013LUW fastq reads ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 36 single-ended 2756275949 Bradley Bernstein, Broad 43dafa7b12575ef2f4c42dc32638cb20 https://www.encodeproject.org/files/ENCFF013LUW/@@download/ENCFF013LUW.fastq.gz Illumina HiSeq 2500 /files/ENCFF137UFY/ released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF096KAF bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF013LUW, ENCFF807MUK 2439519197 ENCODE Processing Pipeline 18e4ae7b92687ee3a32f5d2ab3371612 https://www.encodeproject.org/files/ENCFF096KAF/@@download/ENCFF096KAF.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF269HDS bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF268EDU, ENCFF775QYL, ENCFF807MUK 1536194815 ENCODE Processing Pipeline aa574191f632ed349e92836cfef9d5f6 https://www.encodeproject.org/files/ENCFF269HDS/@@download/ENCFF269HDS.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF463IUB bam unfiltered alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF268EDU, ENCFF643CGH, ENCFF775QYL 2190151323 ENCODE Processing Pipeline 2c3f38ea275d5e7a14616e82dc78520e https://www.encodeproject.org/files/ENCFF463IUB/@@download/ENCFF463IUB.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF635OKD bam unfiltered alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF013LUW, ENCFF643CGH 3503676150 ENCODE Processing Pipeline e0432563c15c274488b95b4a72e73eb4 https://www.encodeproject.org/files/ENCFF635OKD/@@download/ENCFF635OKD.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF415CBQ bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF268EDU, ENCFF643CGH, ENCFF775QYL 1535522623 ENCODE Processing Pipeline 3a91e74ce20619ec915c397d223d20f5 https://www.encodeproject.org/files/ENCFF415CBQ/@@download/ENCFF415CBQ.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF883NNI bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF013LUW, ENCFF643CGH 2438606268 ENCODE Processing Pipeline 76344da7a93dd6155ab327e842f9ba93 https://www.encodeproject.org/files/ENCFF883NNI/@@download/ENCFF883NNI.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF724FEK bigWig signal p-value ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF550VRT, ENCFF883NNI 1090629259 ENCODE Processing Pipeline 5153faa99f24da6570e97eb83b320cb3 https://www.encodeproject.org/files/ENCFF724FEK/@@download/ENCFF724FEK.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF285OQJ bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF186KKP, ENCFF415CBQ 6363187 ENCODE Processing Pipeline ece2ffa588a5a26b1a0f5eb3bbb15bd3 https://www.encodeproject.org/files/ENCFF285OQJ/@@download/ENCFF285OQJ.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF900KCF bigBed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF285OQJ 13419621 ENCODE Processing Pipeline 16d8747ad799d4261afe957ac8096552 https://www.encodeproject.org/files/ENCFF900KCF/@@download/ENCFF900KCF.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF646QPJ bigBed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF133HQQ 13370563 ENCODE Processing Pipeline ade537be0c87b0e034bfc85e1ee12c8e https://www.encodeproject.org/files/ENCFF646QPJ/@@download/ENCFF646QPJ.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF601BDO bed narrowPeak conservative idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF133HQQ, ENCFF206EDF, ENCFF285OQJ, ENCFF419RSJ 12717 ENCODE Processing Pipeline 3657ab6fbe1474104565f5f01d79e55a https://www.encodeproject.org/files/ENCFF601BDO/@@download/ENCFF601BDO.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF060YSO bigBed narrowPeak conservative idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF601BDO 94622 ENCODE Processing Pipeline 7b4a59687d28bcc660ef090961c15768 https://www.encodeproject.org/files/ENCFF060YSO/@@download/ENCFF060YSO.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF216GSC bigBed narrowPeak optimal idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF496XWZ 108824 ENCODE Processing Pipeline cc55362e3f891510a5d1f3fd6b917ed7 https://www.encodeproject.org/files/ENCFF216GSC/@@download/ENCFF216GSC.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF700WNS bigWig fold change over control ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF550VRT, ENCFF883NNI 1215278903 ENCODE Processing Pipeline be3a73b32df3279ba8ae29d9c5f74f83 https://www.encodeproject.org/files/ENCFF700WNS/@@download/ENCFF700WNS.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF248CKW bigWig fold change over control ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF186KKP, ENCFF415CBQ, ENCFF550VRT, ENCFF883NNI 2104934951 ENCODE Processing Pipeline 2a1a9cb272230c12e138470eca805ef5 https://www.encodeproject.org/files/ENCFF248CKW/@@download/ENCFF248CKW.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF206EDF bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF550VRT, ENCFF883NNI 6801997 ENCODE Processing Pipeline f00ac6fc1eb9067b1f0819b1a32e3e50 https://www.encodeproject.org/files/ENCFF206EDF/@@download/ENCFF206EDF.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF757RLX bigBed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF206EDF 13442861 ENCODE Processing Pipeline 4eea8cd47c2c5ae4613c189e33b01c86 https://www.encodeproject.org/files/ENCFF757RLX/@@download/ENCFF757RLX.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF028JJV bigWig signal p-value ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF186KKP, ENCFF415CBQ, ENCFF550VRT, ENCFF883NNI 1696595605 ENCODE Processing Pipeline dd2be4d04f1a0d4261ad99c823bae7ff https://www.encodeproject.org/files/ENCFF028JJV/@@download/ENCFF028JJV.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF133HQQ bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF186KKP, ENCFF415CBQ, ENCFF550VRT, ENCFF883NNI 7209846 ENCODE Processing Pipeline c2046f05be02b351115d2e94e74b5e1e https://www.encodeproject.org/files/ENCFF133HQQ/@@download/ENCFF133HQQ.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF187KRX bigWig signal p-value ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF186KKP, ENCFF415CBQ 994446090 ENCODE Processing Pipeline 7b659fc556611e0124fb13bd03eb9f60 https://www.encodeproject.org/files/ENCFF187KRX/@@download/ENCFF187KRX.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF513LJZ bigWig fold change over control ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF186KKP, ENCFF415CBQ 1051045230 ENCODE Processing Pipeline 071d95917d2055b385360d2da568f3e2 https://www.encodeproject.org/files/ENCFF513LJZ/@@download/ENCFF513LJZ.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF496XWZ bed narrowPeak optimal idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF133HQQ, ENCFF206EDF, ENCFF285OQJ, ENCFF419RSJ 19372 ENCODE Processing Pipeline 60a9c2eceb3596c8d8ad21a68bc0d3ce https://www.encodeproject.org/files/ENCFF496XWZ/@@download/ENCFF496XWZ.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF505PUK bigWig fold change over control ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269HDS, ENCFF824DBS 1037138992 ENCODE Processing Pipeline a6ac3e6634b895236f7d9ac54f14c046 https://www.encodeproject.org/files/ENCFF505PUK/@@download/ENCFF505PUK.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF047QVQ bed narrowPeak conservative idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF370UMM, ENCFF865JLD, ENCFF989VGU 12846 ENCODE Processing Pipeline a32e6c8cd4cffbabc54e7639e02c2035 https://www.encodeproject.org/files/ENCFF047QVQ/@@download/ENCFF047QVQ.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF370UMM bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF011BPU, ENCFF096KAF, ENCFF269HDS, ENCFF824DBS 7214695 ENCODE Processing Pipeline 5c97a5511604c8139d61a43785a8a0c9 https://www.encodeproject.org/files/ENCFF370UMM/@@download/ENCFF370UMM.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF319DPQ bigBed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF989VGU 13458993 ENCODE Processing Pipeline b6c0dc30af48b579555932c5c5c41918 https://www.encodeproject.org/files/ENCFF319DPQ/@@download/ENCFF319DPQ.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF287NXV bed narrowPeak optimal idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF370UMM, ENCFF865JLD, ENCFF989VGU 18478 ENCODE Processing Pipeline d102157a37eff9c1a140a40c66dfb87e https://www.encodeproject.org/files/ENCFF287NXV/@@download/ENCFF287NXV.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF492BWD bigWig fold change over control ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF011BPU, ENCFF096KAF, ENCFF269HDS, ENCFF824DBS 2072294422 ENCODE Processing Pipeline 5a30211a24030a2237234ed0221ae137 https://www.encodeproject.org/files/ENCFF492BWD/@@download/ENCFF492BWD.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF865JLD bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269HDS, ENCFF824DBS 6347524 ENCODE Processing Pipeline 93c75697dd790cd31be052533d3dbd00 https://www.encodeproject.org/files/ENCFF865JLD/@@download/ENCFF865JLD.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF258JDH bigBed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF370UMM 13344448 ENCODE Processing Pipeline 8211e08c682fb3419a5ed45c9a7f12c8 https://www.encodeproject.org/files/ENCFF258JDH/@@download/ENCFF258JDH.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF504RJC bigBed narrowPeak optimal idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF287NXV 106160 ENCODE Processing Pipeline d0ebed7088760920ceea8a06ec276798 https://www.encodeproject.org/files/ENCFF504RJC/@@download/ENCFF504RJC.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF246FMB bigWig signal p-value ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269HDS, ENCFF824DBS 864139922 ENCODE Processing Pipeline e1f476eb3089a7c1602c29e0b3bd8249 https://www.encodeproject.org/files/ENCFF246FMB/@@download/ENCFF246FMB.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF559ZCH bigWig signal p-value ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF011BPU, ENCFF096KAF 919471426 ENCODE Processing Pipeline d335aa14f40e274ede64353179cd8614 https://www.encodeproject.org/files/ENCFF559ZCH/@@download/ENCFF559ZCH.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF413QOX bigWig signal p-value ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF011BPU, ENCFF096KAF, ENCFF269HDS, ENCFF824DBS 2109663705 ENCODE Processing Pipeline dcd49dfe64169c459fc7a4b337e652f8 https://www.encodeproject.org/files/ENCFF413QOX/@@download/ENCFF413QOX.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF854ZOY bigWig fold change over control ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF011BPU, ENCFF096KAF 1206041153 ENCODE Processing Pipeline 435d41bbbeb3e545d4c89137c282f349 https://www.encodeproject.org/files/ENCFF854ZOY/@@download/ENCFF854ZOY.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF989VGU bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF011BPU, ENCFF096KAF 6791978 ENCODE Processing Pipeline f7c26fde17309370db830462d1f2532f https://www.encodeproject.org/files/ENCFF989VGU/@@download/ENCFF989VGU.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF610WDQ bigBed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF865JLD 13427180 ENCODE Processing Pipeline fc641cc73351b4b8eb75c5ec66cea0b0 https://www.encodeproject.org/files/ENCFF610WDQ/@@download/ENCFF610WDQ.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF371HDB bigBed narrowPeak conservative idr thresholded peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF047QVQ 94041 ENCODE Processing Pipeline ce42e6c291df977868ab3efe60254d42 https://www.encodeproject.org/files/ENCFF371HDB/@@download/ENCFF371HDB.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF071LVJ fastq reads ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF932LBZ 2696277681 Michael Snyder, Stanford 74923202e8e4451fc303c87d2d294714 SRA:SRR6213136 https://www.encodeproject.org/files/ENCFF071LVJ/@@download/ENCFF071LVJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF159PHG fastq reads ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF216PTG 3308293379 Michael Snyder, Stanford 44b3df8b2a1e811721bc4f86def0f750 SRA:SRR6213135 https://www.encodeproject.org/files/ENCFF159PHG/@@download/ENCFF159PHG.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF932LBZ fastq reads ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF071LVJ 3116350853 Michael Snyder, Stanford b71a753573ade5f5511892c338d97355 SRA:SRR6213136 https://www.encodeproject.org/files/ENCFF932LBZ/@@download/ENCFF932LBZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF216PTG fastq reads ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF159PHG 3828924225 Michael Snyder, Stanford 2039b5fce65fd25f3b7c71e68d6d995e SRA:SRR6213135 https://www.encodeproject.org/files/ENCFF216PTG/@@download/ENCFF216PTG.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF603PYG bam unfiltered alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF071LVJ, ENCFF643CGH, ENCFF932LBZ 5580675594 ENCODE Processing Pipeline 3840ca5e38c70fdb00cb1b8438e02fbb https://www.encodeproject.org/files/ENCFF603PYG/@@download/ENCFF603PYG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF558UMD bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF071LVJ, ENCFF643CGH, ENCFF932LBZ 4527966622 ENCODE Processing Pipeline d94bfb9c39a9a83e41b3d2dd60fa9dfc https://www.encodeproject.org/files/ENCFF558UMD/@@download/ENCFF558UMD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF655YNI bam unfiltered alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF071LVJ, ENCFF807MUK, ENCFF932LBZ 5570300997 ENCODE Processing Pipeline 3f547e3c92e1b7d5c361a8c1e680f455 https://www.encodeproject.org/files/ENCFF655YNI/@@download/ENCFF655YNI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF367GNZ bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF071LVJ, ENCFF807MUK, ENCFF932LBZ 4524258638 ENCODE Processing Pipeline 513ead14d98094f66e727b294a12ecee https://www.encodeproject.org/files/ENCFF367GNZ/@@download/ENCFF367GNZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF153MOU bam unfiltered alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF159PHG, ENCFF216PTG, ENCFF643CGH 6545812599 ENCODE Processing Pipeline d3aafeb03672391f07e50bbef9b92c52 https://www.encodeproject.org/files/ENCFF153MOU/@@download/ENCFF153MOU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF629RTF bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF159PHG, ENCFF216PTG, ENCFF643CGH 4825304698 ENCODE Processing Pipeline ccfd2e7772f0f2e003036b0c85d1ab6c https://www.encodeproject.org/files/ENCFF629RTF/@@download/ENCFF629RTF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF408VAT bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF159PHG, ENCFF216PTG, ENCFF807MUK 4822326242 ENCODE Processing Pipeline 178794ae702ff5c695e48edc2466e038 https://www.encodeproject.org/files/ENCFF408VAT/@@download/ENCFF408VAT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF735SGJ bam unfiltered alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF159PHG, ENCFF216PTG, ENCFF807MUK 6541061970 ENCODE Processing Pipeline a45adb52479ec093ca131b00314a2d1d https://www.encodeproject.org/files/ENCFF735SGJ/@@download/ENCFF735SGJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF484NIX bigWig fold change over control ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF558UMD, ENCFF746SKT 1774397042 ENCODE Processing Pipeline 6d8da7e749cf95d946a03fa3a693c7f5 https://www.encodeproject.org/files/ENCFF484NIX/@@download/ENCFF484NIX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF543KOJ bigWig signal p-value ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF191XYH, ENCFF558UMD, ENCFF629RTF, ENCFF746SKT 2249449129 ENCODE Processing Pipeline 57d9896b599cdd925ba0d3ce3834fbf9 https://www.encodeproject.org/files/ENCFF543KOJ/@@download/ENCFF543KOJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF426ERR bigBed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF693HVQ 13546951 ENCODE Processing Pipeline ff7180af6db452197c99ec2bb1d299ee https://www.encodeproject.org/files/ENCFF426ERR/@@download/ENCFF426ERR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF933KPT bigWig fold change over control ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF367GNZ, ENCFF447KVS, ENCFF823USR 1780155976 ENCODE Processing Pipeline bd53dccab6102b464ce3f1c8b5cbfc3b https://www.encodeproject.org/files/ENCFF933KPT/@@download/ENCFF933KPT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF097VPS bigWig signal p-value ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF408VAT, ENCFF447KVS, ENCFF823USR 1515777351 ENCODE Processing Pipeline c9d462fdb46cba97c997339b0b02cb04 https://www.encodeproject.org/files/ENCFF097VPS/@@download/ENCFF097VPS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF205HIT bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF558UMD, ENCFF746SKT 6763485 ENCODE Processing Pipeline ffdfa1d488204e22eb12d3e8e523fa14 https://www.encodeproject.org/files/ENCFF205HIT/@@download/ENCFF205HIT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF434ZLM bigBed narrowPeak conservative idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF554VSA 609364 ENCODE Processing Pipeline 6b557929f6437c13debe9314c78a01a2 https://www.encodeproject.org/files/ENCFF434ZLM/@@download/ENCFF434ZLM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF491EBX bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF367GNZ, ENCFF447KVS, ENCFF823USR 6750514 ENCODE Processing Pipeline f4b3cc54b6e1478e33664fd3ebb609ec https://www.encodeproject.org/files/ENCFF491EBX/@@download/ENCFF491EBX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF576IZH bigWig signal p-value ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF191XYH, ENCFF558UMD, ENCFF746SKT 1840377946 ENCODE Processing Pipeline 80f1265e5363a3fafcb25acc6d53e972 https://www.encodeproject.org/files/ENCFF576IZH/@@download/ENCFF576IZH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF642OTY bigWig fold change over control ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF408VAT, ENCFF447KVS, ENCFF823USR 1810543821 ENCODE Processing Pipeline 63548a02bd3b914043ddc8ef4b986ef2 https://www.encodeproject.org/files/ENCFF642OTY/@@download/ENCFF642OTY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF595PIG bigWig signal p-value ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF191XYH, ENCFF629RTF, ENCFF746SKT 1623276488 ENCODE Processing Pipeline 6c6f5c4cf8c942dabb5c9177dd880563 https://www.encodeproject.org/files/ENCFF595PIG/@@download/ENCFF595PIG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF733DYJ bigWig fold change over control ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF191XYH, ENCFF629RTF, ENCFF746SKT 1814347892 ENCODE Processing Pipeline 20a2aadb25173e79d49ddcff8cae33f8 https://www.encodeproject.org/files/ENCFF733DYJ/@@download/ENCFF733DYJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF693HVQ bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF191XYH, ENCFF558UMD, ENCFF629RTF, ENCFF746SKT 7327162 ENCODE Processing Pipeline 18e795552373db524b5b1c9baac3bc1c https://www.encodeproject.org/files/ENCFF693HVQ/@@download/ENCFF693HVQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF640BAJ bigBed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF205HIT 11378407 ENCODE Processing Pipeline 53172b1cb04448680efcf85961bfd3bb https://www.encodeproject.org/files/ENCFF640BAJ/@@download/ENCFF640BAJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF386TTQ bed narrowPeak optimal idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF138HSD, ENCFF491EBX, ENCFF938JGP 383450 ENCODE Processing Pipeline 9d08e04428458646839522bdc4265354 https://www.encodeproject.org/files/ENCFF386TTQ/@@download/ENCFF386TTQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF691XIJ bigWig signal p-value ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF367GNZ, ENCFF447KVS, ENCFF823USR 1415734820 ENCODE Processing Pipeline 2ad4ca1aa29acb75622efa80aadc6f3d https://www.encodeproject.org/files/ENCFF691XIJ/@@download/ENCFF691XIJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF814THY bigWig fold change over control ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF191XYH, ENCFF558UMD, ENCFF629RTF, ENCFF746SKT 2411958932 ENCODE Processing Pipeline 6051dcf40710abf5066bf5b41457f53c https://www.encodeproject.org/files/ENCFF814THY/@@download/ENCFF814THY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF098MTL bigWig signal p-value ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF367GNZ, ENCFF408VAT, ENCFF447KVS, ENCFF823USR 2245055818 ENCODE Processing Pipeline 928d2fd7f67aa20ee0db0e50a2274978 https://www.encodeproject.org/files/ENCFF098MTL/@@download/ENCFF098MTL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF920JYQ bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF191XYH, ENCFF629RTF, ENCFF746SKT 7073204 ENCODE Processing Pipeline 434edcd116facca0edcf6a4d5a1cd61d https://www.encodeproject.org/files/ENCFF920JYQ/@@download/ENCFF920JYQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF952DYK bigBed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF920JYQ 13539669 ENCODE Processing Pipeline 2ea08c26f846b7ee145754235ace44b2 https://www.encodeproject.org/files/ENCFF952DYK/@@download/ENCFF952DYK.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF138HSD bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF408VAT, ENCFF447KVS, ENCFF823USR 7062054 ENCODE Processing Pipeline 630988f78424aeb9b95a283138eab75c https://www.encodeproject.org/files/ENCFF138HSD/@@download/ENCFF138HSD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF394JWE bigBed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF491EBX 11350169 ENCODE Processing Pipeline a1122c5d384f79d7fca81aa1825dbc4a https://www.encodeproject.org/files/ENCFF394JWE/@@download/ENCFF394JWE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF714AHN bed narrowPeak conservative idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF138HSD, ENCFF491EBX, ENCFF938JGP 306464 ENCODE Processing Pipeline c7aa920feb6e9ff40f8d3a5f8cf59a18 https://www.encodeproject.org/files/ENCFF714AHN/@@download/ENCFF714AHN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF991IWN bigBed narrowPeak optimal idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF386TTQ 707699 ENCODE Processing Pipeline b7dd7aa063f64b24cbc51c6b6800a732 https://www.encodeproject.org/files/ENCFF991IWN/@@download/ENCFF991IWN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF554VSA bed narrowPeak conservative idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF205HIT, ENCFF419RSJ, ENCFF693HVQ, ENCFF920JYQ 311561 ENCODE Processing Pipeline 351dd7bc88b7ce48c132ff85b65db974 https://www.encodeproject.org/files/ENCFF554VSA/@@download/ENCFF554VSA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF020UCD bed narrowPeak optimal idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF205HIT, ENCFF419RSJ, ENCFF693HVQ, ENCFF920JYQ 397960 ENCODE Processing Pipeline 137c47cc805e4e5c2fc7282772b4de01 https://www.encodeproject.org/files/ENCFF020UCD/@@download/ENCFF020UCD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF389OLX bigBed narrowPeak optimal idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF020UCD 908528 ENCODE Processing Pipeline e1d648ae25f66a64b1cd85b24aebde88 https://www.encodeproject.org/files/ENCFF389OLX/@@download/ENCFF389OLX.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF786WZY bigWig fold change over control ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF367GNZ, ENCFF408VAT, ENCFF447KVS, ENCFF823USR 2402606295 ENCODE Processing Pipeline 1e806fd25ad3bc1b130fdc083c6699eb https://www.encodeproject.org/files/ENCFF786WZY/@@download/ENCFF786WZY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF938JGP bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF367GNZ, ENCFF408VAT, ENCFF447KVS, ENCFF823USR 7313675 ENCODE Processing Pipeline fabbbb63e8e021fc0bff5db5b5f54812 https://www.encodeproject.org/files/ENCFF938JGP/@@download/ENCFF938JGP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF128FHF bigBed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF938JGP 13519105 ENCODE Processing Pipeline a2354fc8e72f30077b6ec47190db3311 https://www.encodeproject.org/files/ENCFF128FHF/@@download/ENCFF128FHF.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF293QTP bigBed narrowPeak conservative idr thresholded peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF714AHN 599720 ENCODE Processing Pipeline 7c550db51d57e4f2ecabd95396e08525 https://www.encodeproject.org/files/ENCFF293QTP/@@download/ENCFF293QTP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF507LDU bigBed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF138HSD 13510767 ENCODE Processing Pipeline 2422027d9077a4d8aa0775e2320d396e https://www.encodeproject.org/files/ENCFF507LDU/@@download/ENCFF507LDU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF143PZO bam unfiltered alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 50 ENCFF229EAT, ENCFF733OMC, ENCFF807MUK 1778647915 ENCODE Processing Pipeline e5dd649b39bc48ffff030a0705b5639b https://www.encodeproject.org/files/ENCFF143PZO/@@download/ENCFF143PZO.bam hg19 released missing genetic modification characterization ENCFF870GIA bam unfiltered alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 50 ENCFF112KAJ, ENCFF807MUK, ENCFF848CPR 1789430534 ENCODE Processing Pipeline e06a89f260a18fe4f088e895a1e76063 https://www.encodeproject.org/files/ENCFF870GIA/@@download/ENCFF870GIA.bam hg19 released missing genetic modification characterization ENCFF229EAT fastq reads ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 846058387 Kevin White, UChicago 5396afa7918ab231f4c99eaebf0ca6a3 SRA:SRR6213927 https://www.encodeproject.org/files/ENCFF229EAT/@@download/ENCFF229EAT.fastq.gz Illumina HiSeq 2500 /files/ENCFF144MPP/, /files/ENCFF299IIG/ released missing genetic modification characterization ENCFF848CPR fastq reads ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 775760534 Kevin White, UChicago 438a896c4a9766a42d12d73fbea4e8f3 SRA:SRR6213929 https://www.encodeproject.org/files/ENCFF848CPR/@@download/ENCFF848CPR.fastq.gz Illumina HiSeq 2500 /files/ENCFF144MPP/, /files/ENCFF299IIG/ released missing genetic modification characterization ENCFF733OMC fastq reads ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 960035311 Kevin White, UChicago d964ede028d099b2ae131635922d29a3 SRA:SRR6213928 https://www.encodeproject.org/files/ENCFF733OMC/@@download/ENCFF733OMC.fastq.gz Illumina HiSeq 2500 /files/ENCFF144MPP/, /files/ENCFF299IIG/ released missing genetic modification characterization ENCFF112KAJ fastq reads ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1053549467 Kevin White, UChicago 20136bd6b4374c6f3a5241e39cfe114a SRA:SRR6213930 https://www.encodeproject.org/files/ENCFF112KAJ/@@download/ENCFF112KAJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF144MPP/, /files/ENCFF299IIG/ released missing genetic modification characterization ENCFF434TTY bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 50 ENCFF229EAT, ENCFF733OMC, ENCFF807MUK 1137270840 ENCODE Processing Pipeline eb7d86a4e25f61c00480ae998ce6d8db https://www.encodeproject.org/files/ENCFF434TTY/@@download/ENCFF434TTY.bam hg19 released missing genetic modification characterization ENCFF846HRR bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 50 ENCFF112KAJ, ENCFF807MUK, ENCFF848CPR 1122525273 ENCODE Processing Pipeline 7ca796800ed398eafedf3d99b5fb0808 https://www.encodeproject.org/files/ENCFF846HRR/@@download/ENCFF846HRR.bam hg19 released missing genetic modification characterization ENCFF980PLF bigWig signal p-value ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF359SKD, ENCFF846HRR 691657464 ENCODE Processing Pipeline dd2ae8543f45309ff079eae154a97f48 https://www.encodeproject.org/files/ENCFF980PLF/@@download/ENCFF980PLF.bigWig hg19 released missing genetic modification characterization ENCFF663DLL bigWig signal p-value ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF359SKD, ENCFF434TTY 531732557 ENCODE Processing Pipeline 66ca2e4f9b225790d8e87b8611b78e82 https://www.encodeproject.org/files/ENCFF663DLL/@@download/ENCFF663DLL.bigWig hg19 released missing genetic modification characterization ENCFF792VMA bigWig signal p-value ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF359SKD, ENCFF434TTY, ENCFF846HRR 779916179 ENCODE Processing Pipeline 6db3b2e40966dc18f485f8ffb536c812 https://www.encodeproject.org/files/ENCFF792VMA/@@download/ENCFF792VMA.bigWig hg19 released missing genetic modification characterization ENCFF090URM bigWig fold change over control ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF359SKD, ENCFF434TTY 640021401 ENCODE Processing Pipeline 59e077651dd39ab4a224fb2a253718a4 https://www.encodeproject.org/files/ENCFF090URM/@@download/ENCFF090URM.bigWig hg19 released missing genetic modification characterization ENCFF790XMY bigWig fold change over control ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF359SKD, ENCFF846HRR 637140553 ENCODE Processing Pipeline 4e658283231b8bc1a6b481e076802f9e https://www.encodeproject.org/files/ENCFF790XMY/@@download/ENCFF790XMY.bigWig hg19 released missing genetic modification characterization ENCFF628WOU bigWig fold change over control ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF359SKD, ENCFF434TTY, ENCFF846HRR 944623001 ENCODE Processing Pipeline ba6063bc39c5f65f664f980661e06849 https://www.encodeproject.org/files/ENCFF628WOU/@@download/ENCFF628WOU.bigWig hg19 released missing genetic modification characterization ENCFF963CYZ bigBed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF999XQG 12510759 ENCODE Processing Pipeline b18786c76caad2d58e6cfd39a14518fa https://www.encodeproject.org/files/ENCFF963CYZ/@@download/ENCFF963CYZ.bigBed hg19 released missing genetic modification characterization ENCFF999XQG bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF359SKD, ENCFF434TTY, ENCFF846HRR 7222742 ENCODE Processing Pipeline ac11c8049c3ce981169abdc6c69c5266 https://www.encodeproject.org/files/ENCFF999XQG/@@download/ENCFF999XQG.bed.gz hg19 released missing genetic modification characterization ENCFF886JOJ bigBed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF847LNA 12478999 ENCODE Processing Pipeline b3cbf9bcfce0566b98badc0d8a979822 https://www.encodeproject.org/files/ENCFF886JOJ/@@download/ENCFF886JOJ.bigBed hg19 released missing genetic modification characterization ENCFF847LNA bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF359SKD, ENCFF434TTY 7055585 ENCODE Processing Pipeline 0db6cf378fe8914bdee0eeae2d02fc08 https://www.encodeproject.org/files/ENCFF847LNA/@@download/ENCFF847LNA.bed.gz hg19 released missing genetic modification characterization ENCFF162YHD bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF359SKD, ENCFF846HRR 6911168 ENCODE Processing Pipeline 5e8431bc30b30d1ab3f1b30703317636 https://www.encodeproject.org/files/ENCFF162YHD/@@download/ENCFF162YHD.bed.gz hg19 released missing genetic modification characterization ENCFF397RUN bigBed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF162YHD 12666859 ENCODE Processing Pipeline 1f2ae4913dc22ec175ad8fbf06ce9e24 https://www.encodeproject.org/files/ENCFF397RUN/@@download/ENCFF397RUN.bigBed hg19 released missing genetic modification characterization ENCFF289XDI bam unfiltered alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 50 ENCFF229EAT, ENCFF643CGH, ENCFF733OMC 1783643997 ENCODE Processing Pipeline c011e49de40bd737850b7f6e21f7161f https://www.encodeproject.org/files/ENCFF289XDI/@@download/ENCFF289XDI.bam GRCh38 released missing genetic modification characterization ENCFF532ELN bam unfiltered alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 50 ENCFF112KAJ, ENCFF643CGH, ENCFF848CPR 1793968673 ENCODE Processing Pipeline 3652fe5e4ebd755aeb6e1d939c750acf https://www.encodeproject.org/files/ENCFF532ELN/@@download/ENCFF532ELN.bam GRCh38 released missing genetic modification characterization ENCFF625AJO bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 50 ENCFF112KAJ, ENCFF643CGH, ENCFF848CPR 1121846726 ENCODE Processing Pipeline 04bb55024787370a563c56352c699332 https://www.encodeproject.org/files/ENCFF625AJO/@@download/ENCFF625AJO.bam GRCh38 released missing genetic modification characterization ENCFF212PQL bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 50 ENCFF229EAT, ENCFF643CGH, ENCFF733OMC 1136641271 ENCODE Processing Pipeline a7efb48f2d739ccebc65ae0d1debf6fd https://www.encodeproject.org/files/ENCFF212PQL/@@download/ENCFF212PQL.bam GRCh38 released missing genetic modification characterization ENCFF621JAH bigWig signal p-value ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF212PQL, ENCFF623HUN 607843153 ENCODE Processing Pipeline 41852153a1d392498f4d5abbd5bc3088 https://www.encodeproject.org/files/ENCFF621JAH/@@download/ENCFF621JAH.bigWig GRCh38 released missing genetic modification characterization ENCFF917UCD bigWig signal p-value ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF212PQL, ENCFF623HUN, ENCFF625AJO 759715869 ENCODE Processing Pipeline edef03dc0d64a2d5d907ec633969140d https://www.encodeproject.org/files/ENCFF917UCD/@@download/ENCFF917UCD.bigWig GRCh38 released missing genetic modification characterization ENCFF027SEK bigWig signal p-value ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF623HUN, ENCFF625AJO 559807948 ENCODE Processing Pipeline 1bfda15e7290d699c0a44ec34a30e46c https://www.encodeproject.org/files/ENCFF027SEK/@@download/ENCFF027SEK.bigWig GRCh38 released missing genetic modification characterization ENCFF912XOE bigWig fold change over control ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF212PQL, ENCFF623HUN 636147793 ENCODE Processing Pipeline df522ba4472eb21cbbc641491c2e4782 https://www.encodeproject.org/files/ENCFF912XOE/@@download/ENCFF912XOE.bigWig GRCh38 released missing genetic modification characterization ENCFF540IUG bigWig fold change over control ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF623HUN, ENCFF625AJO 635895344 ENCODE Processing Pipeline 847c111c054759631f64ec23d20dfcf7 https://www.encodeproject.org/files/ENCFF540IUG/@@download/ENCFF540IUG.bigWig GRCh38 released missing genetic modification characterization ENCFF252EGE bigWig fold change over control ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF212PQL, ENCFF623HUN, ENCFF625AJO 928224652 ENCODE Processing Pipeline 0212d0502b200f3677d5e98bcebe8387 https://www.encodeproject.org/files/ENCFF252EGE/@@download/ENCFF252EGE.bigWig GRCh38 released missing genetic modification characterization ENCFF510ADW bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF623HUN, ENCFF625AJO 6782293 ENCODE Processing Pipeline 47ede8ef0305a9fa5069bca691edac59 https://www.encodeproject.org/files/ENCFF510ADW/@@download/ENCFF510ADW.bed.gz GRCh38 released missing genetic modification characterization ENCFF173ZKN bigBed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF493OQN 12477238 ENCODE Processing Pipeline 518e758a4245b21969734bdcee7ae655 https://www.encodeproject.org/files/ENCFF173ZKN/@@download/ENCFF173ZKN.bigBed GRCh38 released missing genetic modification characterization ENCFF493OQN bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF212PQL, ENCFF623HUN 6946617 ENCODE Processing Pipeline 640db242d5014dd676fe5228665a3c03 https://www.encodeproject.org/files/ENCFF493OQN/@@download/ENCFF493OQN.bed.gz GRCh38 released missing genetic modification characterization ENCFF840JEL bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF212PQL, ENCFF623HUN, ENCFF625AJO 7172738 ENCODE Processing Pipeline 7fdaf73dec2588017747b7ebf26013c6 https://www.encodeproject.org/files/ENCFF840JEL/@@download/ENCFF840JEL.bed.gz GRCh38 released missing genetic modification characterization ENCFF141SHL bigBed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF510ADW 12670824 ENCODE Processing Pipeline b6fb1d5e1e4e8a17526792342891451a https://www.encodeproject.org/files/ENCFF141SHL/@@download/ENCFF141SHL.bigBed GRCh38 released missing genetic modification characterization ENCFF858JAP bigBed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF840JEL 12516709 ENCODE Processing Pipeline 4881606a3b625c73d04db55fe849fd56 https://www.encodeproject.org/files/ENCFF858JAP/@@download/ENCFF858JAP.bigBed GRCh38 released missing genetic modification characterization ENCFF563MXX bed narrowPeak conservative idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF493OQN, ENCFF510ADW, ENCFF840JEL 484088 ENCODE Processing Pipeline 6003362bcf68caf68da850dc025b97a7 https://www.encodeproject.org/files/ENCFF563MXX/@@download/ENCFF563MXX.bed.gz GRCh38 released missing genetic modification characterization ENCFF885HDN bigBed narrowPeak conservative idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF563MXX 1027531 ENCODE Processing Pipeline fa1acc4491f5c107c73fc6057a893e55 https://www.encodeproject.org/files/ENCFF885HDN/@@download/ENCFF885HDN.bigBed GRCh38 released missing genetic modification characterization ENCFF042OZE bed narrowPeak optimal idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF493OQN, ENCFF510ADW, ENCFF840JEL 493827 ENCODE Processing Pipeline e79bd92c88ae067d27e3ebe933885b20 https://www.encodeproject.org/files/ENCFF042OZE/@@download/ENCFF042OZE.bed.gz GRCh38 released missing genetic modification characterization ENCFF655QVI bigBed narrowPeak optimal idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF042OZE 1043450 ENCODE Processing Pipeline 169680ef86df4d6cdc3063873a7a4e77 https://www.encodeproject.org/files/ENCFF655QVI/@@download/ENCFF655QVI.bigBed GRCh38 released missing genetic modification characterization ENCFF624CZP bed narrowPeak conservative idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF162YHD, ENCFF847LNA, ENCFF999XQG 412446 ENCODE Processing Pipeline 692d1e44ddcd7058604d10ceae315d5e https://www.encodeproject.org/files/ENCFF624CZP/@@download/ENCFF624CZP.bed.gz hg19 released missing genetic modification characterization ENCFF462JFW bed narrowPeak optimal idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF162YHD, ENCFF847LNA, ENCFF999XQG 421045 ENCODE Processing Pipeline cbf4d9f37773b9077321587efc291d1d https://www.encodeproject.org/files/ENCFF462JFW/@@download/ENCFF462JFW.bed.gz hg19 released missing genetic modification characterization ENCFF537TEI bigBed narrowPeak optimal idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF462JFW 757339 ENCODE Processing Pipeline cf685113575ebd8b939f15b9ae870262 https://www.encodeproject.org/files/ENCFF537TEI/@@download/ENCFF537TEI.bigBed hg19 released missing genetic modification characterization ENCFF086SYT bigBed narrowPeak conservative idr thresholded peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF624CZP 746284 ENCODE Processing Pipeline 066eea773e8cd5c5ee450a1b3f7e761f https://www.encodeproject.org/files/ENCFF086SYT/@@download/ENCFF086SYT.bigBed hg19 released missing genetic modification characterization ENCFF000QMN bam alignments ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMZ 818288856 Richard Myers, HAIB 92dcebf0b6f13c2d63f901ade95ab128 https://www.encodeproject.org/files/ENCFF000QMN/@@download/ENCFF000QMN.bam hg19 released biological replicates with identical biosample ENCFF000QMO bigBed broadPeak peaks ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMT 156393 Richard Myers, HAIB 3aa078a77b93770eeed6246c442e14da https://www.encodeproject.org/files/ENCFF000QMO/@@download/ENCFF000QMO.bigBed hg19 released biological replicates with identical biosample ENCFF000QMP bigBed broadPeak peaks ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMU 131783 Richard Myers, HAIB d1af478265db134f5e9fa5fb0b10cc3a https://www.encodeproject.org/files/ENCFF000QMP/@@download/ENCFF000QMP.bigBed hg19 released biological replicates with identical biosample ENCFF000QMQ bam alignments ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QNC 1844079539 Richard Myers, HAIB 8e3d5d9ddc60fe9baf0f4e2d703b6189 https://www.encodeproject.org/files/ENCFF000QMQ/@@download/ENCFF000QMQ.bam hg19 released biological replicates with identical biosample ENCFF000QMR bigWig raw signal ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 230213283 Richard Myers, HAIB 31aca849f956121816804e8f138d1d2f https://www.encodeproject.org/files/ENCFF000QMR/@@download/ENCFF000QMR.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QMT bigWig raw signal ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 101636965 Richard Myers, HAIB 8c06e0f68fee2c2c438f8c9d2d23e326 https://www.encodeproject.org/files/ENCFF000QMT/@@download/ENCFF000QMT.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QMZ fastq reads ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 819206320 Richard Myers, HAIB c37ae2eacea8c3abea0a2af9b692a4a8 https://www.encodeproject.org/files/ENCFF000QMZ/@@download/ENCFF000QMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQK/ released biological replicates with identical biosample ENCFF000QNC fastq reads ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1883337383 Richard Myers, HAIB f0795e6da5b13cd4de6c17992c5a8404 https://www.encodeproject.org/files/ENCFF000QNC/@@download/ENCFF000QNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMT bed broadPeak peaks ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 68507 Richard Myers, HAIB 73942487ba9df88515f83f79d74ede1a https://www.encodeproject.org/files/ENCFF001UMT/@@download/ENCFF001UMT.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UMU bed broadPeak peaks ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 52414 Richard Myers, HAIB cd9d68d8596fa6e82c17f4e9203ced7a https://www.encodeproject.org/files/ENCFF001UMU/@@download/ENCFF001UMU.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QME bam alignments ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QMU 1724569241 Richard Myers, HAIB 26d342da36723366b1915118a7560859 https://www.encodeproject.org/files/ENCFF000QME/@@download/ENCFF000QME.bam hg19 released biological replicates with identical biosample ENCFF000QMG bigBed broadPeak peaks ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMR 501341 Richard Myers, HAIB ebd48285cc04788067f41bc0e05463ec https://www.encodeproject.org/files/ENCFF000QMG/@@download/ENCFF000QMG.bigBed hg19 released biological replicates with identical biosample ENCFF000QMH bigBed broadPeak peaks ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMS 189811 Richard Myers, HAIB b38ff1f546d16fe7248e323de68ad6ce https://www.encodeproject.org/files/ENCFF000QMH/@@download/ENCFF000QMH.bigBed hg19 released biological replicates with identical biosample ENCFF000QMI bam alignments ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMS 856847259 Richard Myers, HAIB 30a19ffde77b0ce2ff000b22fb9df780 https://www.encodeproject.org/files/ENCFF000QMI/@@download/ENCFF000QMI.bam hg19 released biological replicates with identical biosample ENCFF000QML bigWig raw signal ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 217369780 Richard Myers, HAIB 7bebdfe27aa712e1de17fccdadba9fac https://www.encodeproject.org/files/ENCFF000QML/@@download/ENCFF000QML.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QMM bigWig raw signal ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 105839969 Richard Myers, HAIB cc58084e1fefe6ca0bdd90b9633f1392 https://www.encodeproject.org/files/ENCFF000QMM/@@download/ENCFF000QMM.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QMS fastq reads ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 861378940 Richard Myers, HAIB d62d57330df1fb93cd05c86499dad151 https://www.encodeproject.org/files/ENCFF000QMS/@@download/ENCFF000QMS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQK/ released biological replicates with identical biosample ENCFF000QMU fastq reads ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1769050093 Richard Myers, HAIB 48aa028ce23f21c21f46faac7b41252e https://www.encodeproject.org/files/ENCFF000QMU/@@download/ENCFF000QMU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMR bed broadPeak peaks ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 253736 Richard Myers, HAIB 7009fa12b6ecd49f60d35090b18cdfcc https://www.encodeproject.org/files/ENCFF001UMR/@@download/ENCFF001UMR.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UMS bed broadPeak peaks ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 89054 Richard Myers, HAIB 2290e708f08d059f70fa5e5ed3c24395 https://www.encodeproject.org/files/ENCFF001UMS/@@download/ENCFF001UMS.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF807MLK fastq reads ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF846CXS 2960092104 Michael Snyder, Stanford 85687cf1845ec356c7c36c5dcfa05865 SRA:SRR5112240 https://www.encodeproject.org/files/ENCFF807MLK/@@download/ENCFF807MLK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF774HWW fastq reads ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF554YBC 2051999798 Michael Snyder, Stanford 71ae8c6861e61e0998aef6f020514992 SRA:SRR5112239 https://www.encodeproject.org/files/ENCFF774HWW/@@download/ENCFF774HWW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF846CXS fastq reads ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF807MLK 3029717670 Michael Snyder, Stanford 828ca80d41adda50b8b334ff8b5c25d9 SRA:SRR5112240 https://www.encodeproject.org/files/ENCFF846CXS/@@download/ENCFF846CXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF554YBC fastq reads ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF774HWW 2114667463 Michael Snyder, Stanford a25991187bfadaa91afbe364090c0432 SRA:SRR5112239 https://www.encodeproject.org/files/ENCFF554YBC/@@download/ENCFF554YBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF203CGF bam unfiltered alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF554YBC, ENCFF774HWW, ENCFF807MUK 4620184811 ENCODE Processing Pipeline 8d1d38891535205cc8be82ab647e0d12 https://www.encodeproject.org/files/ENCFF203CGF/@@download/ENCFF203CGF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF139EUW bam unfiltered alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF554YBC, ENCFF643CGH, ENCFF774HWW 4623897329 ENCODE Processing Pipeline 0955c6bee1366aeb792230f0c96a9197 https://www.encodeproject.org/files/ENCFF139EUW/@@download/ENCFF139EUW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF134YNB bam unfiltered alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MLK, ENCFF807MUK, ENCFF846CXS 6479420305 ENCODE Processing Pipeline ba10197b96174f855a4006bffa0690d6 https://www.encodeproject.org/files/ENCFF134YNB/@@download/ENCFF134YNB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF061PFQ bam unfiltered alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF807MLK, ENCFF846CXS 6483626049 ENCODE Processing Pipeline 639ccca470b0144663ce838ce66e59cf https://www.encodeproject.org/files/ENCFF061PFQ/@@download/ENCFF061PFQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF130LXW bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF554YBC, ENCFF774HWW, ENCFF807MUK 3907217655 ENCODE Processing Pipeline 0a6eeb5bdfa341ecd7f77fac60df2472 https://www.encodeproject.org/files/ENCFF130LXW/@@download/ENCFF130LXW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF986TQA bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF554YBC, ENCFF643CGH, ENCFF774HWW 3908515273 ENCODE Processing Pipeline 198ac0695e195c7d8ca0db7c09c46931 https://www.encodeproject.org/files/ENCFF986TQA/@@download/ENCFF986TQA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF975JDZ bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MLK, ENCFF807MUK, ENCFF846CXS 5366097869 ENCODE Processing Pipeline c3ea86c05a721f4af488b01317885fbf https://www.encodeproject.org/files/ENCFF975JDZ/@@download/ENCFF975JDZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF306VSK bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF807MLK, ENCFF846CXS 5368827052 ENCODE Processing Pipeline 7e575e41bfecfad6ed4f5a50024ccb96 https://www.encodeproject.org/files/ENCFF306VSK/@@download/ENCFF306VSK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF802UBM bigWig signal p-value ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF975JDZ 1362738766 ENCODE Processing Pipeline c8713723951378b06dc394cd6916331f https://www.encodeproject.org/files/ENCFF802UBM/@@download/ENCFF802UBM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF745UBY bigWig signal p-value ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130LXW 1191062942 ENCODE Processing Pipeline d3b372b2b69e45f48183b8a7504a7c91 https://www.encodeproject.org/files/ENCFF745UBY/@@download/ENCFF745UBY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF467LDB bigWig signal p-value ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF130LXW, ENCFF975JDZ 1938798988 ENCODE Processing Pipeline 76b4c7c251362650db71e9a26f65788d https://www.encodeproject.org/files/ENCFF467LDB/@@download/ENCFF467LDB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF946QSE bigWig fold change over control ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF975JDZ 1507337262 ENCODE Processing Pipeline 8017529295a399c43ae74b6a210bacd3 https://www.encodeproject.org/files/ENCFF946QSE/@@download/ENCFF946QSE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF255VXN bigWig fold change over control ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130LXW 1279302694 ENCODE Processing Pipeline 22b10d8636fb784bec8af2d28ca00938 https://www.encodeproject.org/files/ENCFF255VXN/@@download/ENCFF255VXN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF907VUB bigWig fold change over control ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF130LXW, ENCFF975JDZ 1950371314 ENCODE Processing Pipeline 336226eaf14976392f737bdeec4b1a0e https://www.encodeproject.org/files/ENCFF907VUB/@@download/ENCFF907VUB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF701BYF bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF975JDZ 6942811 ENCODE Processing Pipeline ee3a30c5a1a85dde5914b9d2b6847b97 https://www.encodeproject.org/files/ENCFF701BYF/@@download/ENCFF701BYF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF650FDP bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130LXW 6923443 ENCODE Processing Pipeline c874b04801d74d8383d1d427e878cd4d https://www.encodeproject.org/files/ENCFF650FDP/@@download/ENCFF650FDP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF162FCA bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF130LXW, ENCFF975JDZ 7230931 ENCODE Processing Pipeline 78eb7d4ec159cf0f12efae5a7cff7c0e https://www.encodeproject.org/files/ENCFF162FCA/@@download/ENCFF162FCA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF026URO bigBed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF701BYF 13543373 ENCODE Processing Pipeline 0dd22d55a5259ef3e4f2088891c59cb6 https://www.encodeproject.org/files/ENCFF026URO/@@download/ENCFF026URO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF229WSJ bigBed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF650FDP 13419049 ENCODE Processing Pipeline fcddb46471167c3ebc352d8fdb275fd5 https://www.encodeproject.org/files/ENCFF229WSJ/@@download/ENCFF229WSJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF176ILV bigBed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF162FCA 13374956 ENCODE Processing Pipeline 310906ff67ede90cfe756c85e658b245 https://www.encodeproject.org/files/ENCFF176ILV/@@download/ENCFF176ILV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF173KZO bed narrowPeak conservative idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF162FCA, ENCFF650FDP, ENCFF701BYF 359302 ENCODE Processing Pipeline 7050c4070583cdefad03ec85ee39bb18 https://www.encodeproject.org/files/ENCFF173KZO/@@download/ENCFF173KZO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF579XLU bigBed narrowPeak conservative idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF173KZO 675899 ENCODE Processing Pipeline 81ecbfa74867b1a7c4759cccd090b971 https://www.encodeproject.org/files/ENCFF579XLU/@@download/ENCFF579XLU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF201ZGY bed narrowPeak optimal idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF162FCA, ENCFF650FDP, ENCFF701BYF 399407 ENCODE Processing Pipeline 8d79ea6bdeec1a243ea9b73e4941f75a https://www.encodeproject.org/files/ENCFF201ZGY/@@download/ENCFF201ZGY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF137ORK bigBed narrowPeak optimal idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF201ZGY 733836 ENCODE Processing Pipeline 62d1cc094293fe37201168c4de6da4ce https://www.encodeproject.org/files/ENCFF137ORK/@@download/ENCFF137ORK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF646UYO bigWig signal p-value ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF306VSK 1479480954 ENCODE Processing Pipeline b98b4f807ecee72a3807cd9614586bb3 https://www.encodeproject.org/files/ENCFF646UYO/@@download/ENCFF646UYO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF638SJP bigWig signal p-value ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF986TQA 1316454576 ENCODE Processing Pipeline aab409df39ed6e7d955a748b6eea40d4 https://www.encodeproject.org/files/ENCFF638SJP/@@download/ENCFF638SJP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF981ILL bigWig signal p-value ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF306VSK, ENCFF986TQA 1969006274 ENCODE Processing Pipeline 507dd46af6d898a3a9b5c81435b26953 https://www.encodeproject.org/files/ENCFF981ILL/@@download/ENCFF981ILL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF547AVH bigWig fold change over control ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF306VSK 1495924781 ENCODE Processing Pipeline 8693efec216a2fca271787d9821318ae https://www.encodeproject.org/files/ENCFF547AVH/@@download/ENCFF547AVH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF529TBY bigWig fold change over control ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF986TQA 1301532098 ENCODE Processing Pipeline 72f9a01859f892c2398aeffc08499505 https://www.encodeproject.org/files/ENCFF529TBY/@@download/ENCFF529TBY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF101RSR bigWig fold change over control ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF306VSK, ENCFF986TQA 1984178304 ENCODE Processing Pipeline b524372c9de8822c63347abaa4134fa7 https://www.encodeproject.org/files/ENCFF101RSR/@@download/ENCFF101RSR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF160NEW bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF306VSK 6835234 ENCODE Processing Pipeline a36ecb039c155b521166dfe4d04bc42c https://www.encodeproject.org/files/ENCFF160NEW/@@download/ENCFF160NEW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF377XCV bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF986TQA 6822415 ENCODE Processing Pipeline d6cb54acb76ce42e5ee8651bebc7ec11 https://www.encodeproject.org/files/ENCFF377XCV/@@download/ENCFF377XCV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF215ANP bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF306VSK, ENCFF986TQA 7204446 ENCODE Processing Pipeline 7ab091ab0be6c60ce01fbfe6c23e004a https://www.encodeproject.org/files/ENCFF215ANP/@@download/ENCFF215ANP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF596IBO bigBed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF160NEW 13550841 ENCODE Processing Pipeline f4c081fab2bff59f06da0489770495f8 https://www.encodeproject.org/files/ENCFF596IBO/@@download/ENCFF596IBO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF144PUW bigBed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF377XCV 13429053 ENCODE Processing Pipeline c9ded5607f5d3d852006c28e843907b7 https://www.encodeproject.org/files/ENCFF144PUW/@@download/ENCFF144PUW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF784IMY bigBed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF215ANP 13373010 ENCODE Processing Pipeline c5310493a4da782dfce5612d05c3aa8a https://www.encodeproject.org/files/ENCFF784IMY/@@download/ENCFF784IMY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF653SCL bed narrowPeak optimal idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF160NEW, ENCFF215ANP, ENCFF377XCV, ENCFF419RSJ 392486 ENCODE Processing Pipeline 46967f128009286beaae562db3acaf42 https://www.encodeproject.org/files/ENCFF653SCL/@@download/ENCFF653SCL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF012QKZ bed narrowPeak conservative idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF160NEW, ENCFF215ANP, ENCFF377XCV, ENCFF419RSJ 355858 ENCODE Processing Pipeline 03a82efc207fc116b8b0c3909581c6bc https://www.encodeproject.org/files/ENCFF012QKZ/@@download/ENCFF012QKZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF562PZR bigBed narrowPeak conservative idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF012QKZ 673888 ENCODE Processing Pipeline d86c3637f00258e04e452067d653dc23 https://www.encodeproject.org/files/ENCFF562PZR/@@download/ENCFF562PZR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF383OXF bigBed narrowPeak optimal idr thresholded peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF653SCL 726148 ENCODE Processing Pipeline 07dc03df62163d1f6450a6e50d045ec0 https://www.encodeproject.org/files/ENCFF383OXF/@@download/ENCFF383OXF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF050CTT fastq reads ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF641CWU 2288811214 Michael Snyder, Stanford b7d7fcbc66fc82af332a00fbb9b25139 SRA:SRR6213034 https://www.encodeproject.org/files/ENCFF050CTT/@@download/ENCFF050CTT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF641CWU fastq reads ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF050CTT 2328677924 Michael Snyder, Stanford 4904b4822a6f0f38bc4bb413338465f8 SRA:SRR6213034 https://www.encodeproject.org/files/ENCFF641CWU/@@download/ENCFF641CWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF204JBE fastq reads ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF013IOZ 2781862832 Michael Snyder, Stanford 30361eedb9319fdf5342a065e544b5ca SRA:SRR6213033 https://www.encodeproject.org/files/ENCFF204JBE/@@download/ENCFF204JBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF013IOZ fastq reads ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF204JBE 2840474024 Michael Snyder, Stanford 0fd4dafabba48635d7923a172d307bf5 SRA:SRR6213033 https://www.encodeproject.org/files/ENCFF013IOZ/@@download/ENCFF013IOZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF027HVV bam unfiltered alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF050CTT, ENCFF641CWU, ENCFF807MUK 4742998061 ENCODE Processing Pipeline df025b1d56ef78431b2acf7a112a29bb https://www.encodeproject.org/files/ENCFF027HVV/@@download/ENCFF027HVV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF723GWC bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF050CTT, ENCFF641CWU, ENCFF807MUK 4074997723 ENCODE Processing Pipeline 02b97dd0ae5ffb3a19916e5593946dbc https://www.encodeproject.org/files/ENCFF723GWC/@@download/ENCFF723GWC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF655HOO bam unfiltered alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF050CTT, ENCFF641CWU, ENCFF643CGH 4748586491 ENCODE Processing Pipeline 300fb75641155e50a6b5223c1c008ead https://www.encodeproject.org/files/ENCFF655HOO/@@download/ENCFF655HOO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF520WLC bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF050CTT, ENCFF641CWU, ENCFF643CGH 4077411891 ENCODE Processing Pipeline 593e71aa84e5e6ac437602104400c4b2 https://www.encodeproject.org/files/ENCFF520WLC/@@download/ENCFF520WLC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF419HME bam unfiltered alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF013IOZ, ENCFF204JBE, ENCFF807MUK 5699672124 ENCODE Processing Pipeline c51c146e2993f9d41b0b023144e200d6 https://www.encodeproject.org/files/ENCFF419HME/@@download/ENCFF419HME.bam hg19 released missing genetic modification characterization missing control alignments ENCFF472VIX bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF013IOZ, ENCFF204JBE, ENCFF643CGH 4856186340 ENCODE Processing Pipeline ddabdaa7595e8c24b9117d24ce8fbd06 https://www.encodeproject.org/files/ENCFF472VIX/@@download/ENCFF472VIX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF340DGT bam unfiltered alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF013IOZ, ENCFF204JBE, ENCFF643CGH 5706325270 ENCODE Processing Pipeline 5d1973805b8b6c383eb3dba1175b5bf5 https://www.encodeproject.org/files/ENCFF340DGT/@@download/ENCFF340DGT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF041AGD bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF013IOZ, ENCFF204JBE, ENCFF807MUK 4853159560 ENCODE Processing Pipeline 46a1a623b4a11351e0366b7bb49119c0 https://www.encodeproject.org/files/ENCFF041AGD/@@download/ENCFF041AGD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF430LBN bigWig signal p-value ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF723GWC 1400715760 ENCODE Processing Pipeline 121729bf4b3c4fe3988db9d87c27e06d https://www.encodeproject.org/files/ENCFF430LBN/@@download/ENCFF430LBN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF234RVN bigWig signal p-value ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF041AGD, ENCFF723GWC 1516823541 ENCODE Processing Pipeline dabe231fd2f4ab97e11afeb465adfb9c https://www.encodeproject.org/files/ENCFF234RVN/@@download/ENCFF234RVN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF198WMF bigWig signal p-value ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF041AGD 1212702473 ENCODE Processing Pipeline 916272ff459389e553c34cff9a7c49d0 https://www.encodeproject.org/files/ENCFF198WMF/@@download/ENCFF198WMF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF908BKY bigWig fold change over control ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF041AGD 1449282449 ENCODE Processing Pipeline 543ce385c1f3822fc653a22c361e1c77 https://www.encodeproject.org/files/ENCFF908BKY/@@download/ENCFF908BKY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF956XLH bigWig fold change over control ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF723GWC 1293759369 ENCODE Processing Pipeline 24a22f374917ed8f5911c07ccd0c0d6a https://www.encodeproject.org/files/ENCFF956XLH/@@download/ENCFF956XLH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF658AYX bigBed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF694LBT 13218241 ENCODE Processing Pipeline 62cff9f85a96049c7973bb1fb791a103 https://www.encodeproject.org/files/ENCFF658AYX/@@download/ENCFF658AYX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF371GDF bigBed narrowPeak conservative idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF075ZNT 268873 ENCODE Processing Pipeline 44d77cbe1f59b98157d158677502f8dc https://www.encodeproject.org/files/ENCFF371GDF/@@download/ENCFF371GDF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF263ZII bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF723GWC 6617388 ENCODE Processing Pipeline ffdd6e9d28d134733d21963f1ebb3200 https://www.encodeproject.org/files/ENCFF263ZII/@@download/ENCFF263ZII.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF694LBT bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF041AGD, ENCFF723GWC 7159655 ENCODE Processing Pipeline 5f74895d732bc7cf7c9c0b4745bc0010 https://www.encodeproject.org/files/ENCFF694LBT/@@download/ENCFF694LBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF441TAC bigBed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF263ZII 11250264 ENCODE Processing Pipeline f839809526d8e66d3185fad78b69303a https://www.encodeproject.org/files/ENCFF441TAC/@@download/ENCFF441TAC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF434RXV bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF041AGD 6838323 ENCODE Processing Pipeline fce1e5a9c986ed355bd5e38a8afd54cd https://www.encodeproject.org/files/ENCFF434RXV/@@download/ENCFF434RXV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF888AXJ bigBed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF434RXV 13357897 ENCODE Processing Pipeline ef7945666cf1e698fdb00d2e5fdb143d https://www.encodeproject.org/files/ENCFF888AXJ/@@download/ENCFF888AXJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF707RVS bigWig fold change over control ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF041AGD, ENCFF723GWC 1945967308 ENCODE Processing Pipeline 994a73530e691fe1a19718bc50288ca2 https://www.encodeproject.org/files/ENCFF707RVS/@@download/ENCFF707RVS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF075ZNT bed narrowPeak conservative idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF263ZII, ENCFF434RXV, ENCFF694LBT 136713 ENCODE Processing Pipeline 95cdd86b8800048614c61b0c82ceca45 https://www.encodeproject.org/files/ENCFF075ZNT/@@download/ENCFF075ZNT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF226TGT bigBed narrowPeak optimal idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF313ZNM 382689 ENCODE Processing Pipeline 7dbb27c4f0ac65a83808e2b7caf23702 https://www.encodeproject.org/files/ENCFF226TGT/@@download/ENCFF226TGT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF313ZNM bed narrowPeak optimal idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF263ZII, ENCFF434RXV, ENCFF694LBT 169359 ENCODE Processing Pipeline 2ee20db96bdb51b29bac7e9a2d6c8d75 https://www.encodeproject.org/files/ENCFF313ZNM/@@download/ENCFF313ZNM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF281KFN bigWig signal p-value ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF472VIX 1432015523 ENCODE Processing Pipeline 7f6e48922ffbdd630609e08d22f7ff3c https://www.encodeproject.org/files/ENCFF281KFN/@@download/ENCFF281KFN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF165LKE bigWig signal p-value ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF472VIX, ENCFF520WLC 1705575346 ENCODE Processing Pipeline cba3cf3017c06fb18ad9a16b6ac1a838 https://www.encodeproject.org/files/ENCFF165LKE/@@download/ENCFF165LKE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF361ZYQ bigWig fold change over control ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF520WLC 1270330487 ENCODE Processing Pipeline 9cf20646c3b4831741e3109e527fd1be https://www.encodeproject.org/files/ENCFF361ZYQ/@@download/ENCFF361ZYQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF013PIW bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF472VIX, ENCFF520WLC 7163822 ENCODE Processing Pipeline 0729d6abc3968725731ded645fea00cc https://www.encodeproject.org/files/ENCFF013PIW/@@download/ENCFF013PIW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF220JXF bigWig signal p-value ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF520WLC 1107280750 ENCODE Processing Pipeline ca7a2adfac879c25fd10855b6d845b13 https://www.encodeproject.org/files/ENCFF220JXF/@@download/ENCFF220JXF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF281BOR bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF472VIX 6842644 ENCODE Processing Pipeline c7c3937f16e15f47b7ff78acb2515e24 https://www.encodeproject.org/files/ENCFF281BOR/@@download/ENCFF281BOR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF915DLG bigWig fold change over control ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF472VIX 1445704942 ENCODE Processing Pipeline 71125318d1ceb15e9b8d5e90a59c0292 https://www.encodeproject.org/files/ENCFF915DLG/@@download/ENCFF915DLG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF491FSW bigWig fold change over control ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF472VIX, ENCFF520WLC 1935537626 ENCODE Processing Pipeline 9b9980746a2071267c94c8deeba34891 https://www.encodeproject.org/files/ENCFF491FSW/@@download/ENCFF491FSW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF406GUJ bigBed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF384XVB 11273411 ENCODE Processing Pipeline 5d7354c2712a167735328c01c3f01380 https://www.encodeproject.org/files/ENCFF406GUJ/@@download/ENCFF406GUJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF384XVB bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF520WLC 6545335 ENCODE Processing Pipeline f0256148c42ffb0b538ef3f38e87c553 https://www.encodeproject.org/files/ENCFF384XVB/@@download/ENCFF384XVB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF763JSG bigBed narrowPeak conservative idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF304TYI 267233 ENCODE Processing Pipeline 07d5d88fe149c7b2e220017c12c31ea3 https://www.encodeproject.org/files/ENCFF763JSG/@@download/ENCFF763JSG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF013HUP bigBed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF281BOR 13373026 ENCODE Processing Pipeline 1ca442cd36f7a60ee8e9bbc46122a745 https://www.encodeproject.org/files/ENCFF013HUP/@@download/ENCFF013HUP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF304TYI bed narrowPeak conservative idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF013PIW, ENCFF281BOR, ENCFF384XVB, ENCFF419RSJ 134545 ENCODE Processing Pipeline a17acee4b1f3fe713024ecca6831b86c https://www.encodeproject.org/files/ENCFF304TYI/@@download/ENCFF304TYI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF113OWH bed narrowPeak optimal idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF013PIW, ENCFF281BOR, ENCFF384XVB, ENCFF419RSJ 165279 ENCODE Processing Pipeline f01806d494fb338c318b382efa1c7f3d https://www.encodeproject.org/files/ENCFF113OWH/@@download/ENCFF113OWH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF734ADN bigBed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF013PIW 13233096 ENCODE Processing Pipeline 912a90b5496353858d0ac6a5a13b8599 https://www.encodeproject.org/files/ENCFF734ADN/@@download/ENCFF734ADN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF146OGJ bigBed narrowPeak optimal idr thresholded peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF113OWH 377152 ENCODE Processing Pipeline 72b2cdc4951a27f1c59f6e3fa1271d0f https://www.encodeproject.org/files/ENCFF146OGJ/@@download/ENCFF146OGJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF623BWW fastq reads ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF753QHT 4021524774 Michael Snyder, Stanford 6e6d5b3a618754da16add87829263f65 SRA:SRR5112122 https://www.encodeproject.org/files/ENCFF623BWW/@@download/ENCFF623BWW.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF169UAL fastq reads ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF747KWI 3370235890 Michael Snyder, Stanford 9151ba047a8889d39ebe0c62a5c678c6 SRA:SRR5112121 https://www.encodeproject.org/files/ENCFF169UAL/@@download/ENCFF169UAL.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF747KWI fastq reads ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF169UAL 3429979267 Michael Snyder, Stanford 01e1770124ed4d81b69c5b0a57a9f6c8 SRA:SRR5112121 https://www.encodeproject.org/files/ENCFF747KWI/@@download/ENCFF747KWI.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF753QHT fastq reads ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF623BWW 4190766096 Michael Snyder, Stanford b39eebaa6806d7cce70f83a454158fa5 SRA:SRR5112122 https://www.encodeproject.org/files/ENCFF753QHT/@@download/ENCFF753QHT.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF737UQB bam unfiltered alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF169UAL, ENCFF747KWI, ENCFF807MUK 6610615341 ENCODE Processing Pipeline ab9f96e782cc0dafdace889c6ade65b2 https://www.encodeproject.org/files/ENCFF737UQB/@@download/ENCFF737UQB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF224SAA bam unfiltered alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF623BWW, ENCFF643CGH, ENCFF753QHT 7792988609 ENCODE Processing Pipeline fce693adfd1f48f91b08d4acd1728054 https://www.encodeproject.org/files/ENCFF224SAA/@@download/ENCFF224SAA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF105VZA bam unfiltered alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF623BWW, ENCFF753QHT, ENCFF807MUK 7781495877 ENCODE Processing Pipeline e1adc37d0b12f0eafbc31991a4879c3f https://www.encodeproject.org/files/ENCFF105VZA/@@download/ENCFF105VZA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF130QRS bam unfiltered alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF169UAL, ENCFF643CGH, ENCFF747KWI 6620263103 ENCODE Processing Pipeline b9ba5aa088c0f5ad0baf437056d51343 https://www.encodeproject.org/files/ENCFF130QRS/@@download/ENCFF130QRS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF533OJM bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF169UAL, ENCFF643CGH, ENCFF747KWI 5525781068 ENCODE Processing Pipeline 1d20303b5a477d3455840db69680f127 https://www.encodeproject.org/files/ENCFF533OJM/@@download/ENCFF533OJM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF654MCA bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF169UAL, ENCFF747KWI, ENCFF807MUK 5520658527 ENCODE Processing Pipeline a79a07fb14db87f2f82962e6eeeaefc1 https://www.encodeproject.org/files/ENCFF654MCA/@@download/ENCFF654MCA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF794NBJ bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF623BWW, ENCFF643CGH, ENCFF753QHT 6472250110 ENCODE Processing Pipeline 1476614b1287e44f37afe39981f18150 https://www.encodeproject.org/files/ENCFF794NBJ/@@download/ENCFF794NBJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF410VAL bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF623BWW, ENCFF753QHT, ENCFF807MUK 6465416385 ENCODE Processing Pipeline eb9f7724834f5f461f1c5f2a4ae13254 https://www.encodeproject.org/files/ENCFF410VAL/@@download/ENCFF410VAL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF829BWS bigWig fold change over control ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF410VAL 2028370985 ENCODE Processing Pipeline 2d07ee2cfb262ed98748dfda9cff793f https://www.encodeproject.org/files/ENCFF829BWS/@@download/ENCFF829BWS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF186ZTM bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF410VAL 7247772 ENCODE Processing Pipeline f77b8a25bb90d17f0e6ece643dea9963 https://www.encodeproject.org/files/ENCFF186ZTM/@@download/ENCFF186ZTM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF827MOW bigBed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF866TGY 13279469 ENCODE Processing Pipeline 6b5c4af5a59c20d9425cb56b572ac81a https://www.encodeproject.org/files/ENCFF827MOW/@@download/ENCFF827MOW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF027TGW bigWig signal p-value ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF654MCA 1738786448 ENCODE Processing Pipeline 071b4a6842ab9cc69f638e10fcbf4f78 https://www.encodeproject.org/files/ENCFF027TGW/@@download/ENCFF027TGW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF334XTK bigWig signal p-value ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF410VAL 1986582064 ENCODE Processing Pipeline b3b98ceb9da1f0ac56892637c1bdc62c https://www.encodeproject.org/files/ENCFF334XTK/@@download/ENCFF334XTK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF184SNL bigWig signal p-value ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF410VAL, ENCFF654MCA 1915181956 ENCODE Processing Pipeline 7ff0b4e4126d6a98071b670579e4b30d https://www.encodeproject.org/files/ENCFF184SNL/@@download/ENCFF184SNL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF221XYA bigWig fold change over control ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF654MCA 1849868926 ENCODE Processing Pipeline 3d3b45400fb8591de08777772e169865 https://www.encodeproject.org/files/ENCFF221XYA/@@download/ENCFF221XYA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF136KPQ bigWig fold change over control ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF410VAL, ENCFF654MCA 2636603139 ENCODE Processing Pipeline fb57c797e893c6a91ad9964f0046d958 https://www.encodeproject.org/files/ENCFF136KPQ/@@download/ENCFF136KPQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF866TGY bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF654MCA 7136400 ENCODE Processing Pipeline f45bc67528629894e7c39156e6c3bf93 https://www.encodeproject.org/files/ENCFF866TGY/@@download/ENCFF866TGY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF357GGG bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF410VAL, ENCFF654MCA 7367954 ENCODE Processing Pipeline e04407d3b5bd2d21f528bb13fc4e1991 https://www.encodeproject.org/files/ENCFF357GGG/@@download/ENCFF357GGG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF319MLU bigBed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF186ZTM 13186229 ENCODE Processing Pipeline b16a5e1e747f2e61fdc4be29f5bcd4a6 https://www.encodeproject.org/files/ENCFF319MLU/@@download/ENCFF319MLU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF420VUF bigBed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF357GGG 13249623 ENCODE Processing Pipeline 42c6de11f6734fb607c116528368940c https://www.encodeproject.org/files/ENCFF420VUF/@@download/ENCFF420VUF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF111CFA bed narrowPeak conservative idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF186ZTM, ENCFF357GGG, ENCFF866TGY 420672 ENCODE Processing Pipeline 4b91ea5e309278e2bb01aa6be09bb4c5 https://www.encodeproject.org/files/ENCFF111CFA/@@download/ENCFF111CFA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF780JHH bigBed narrowPeak conservative idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF111CFA 819259 ENCODE Processing Pipeline 6ab064c25884ac8d9631f6dc5dd2be66 https://www.encodeproject.org/files/ENCFF780JHH/@@download/ENCFF780JHH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF065VOT bed narrowPeak optimal idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF186ZTM, ENCFF357GGG, ENCFF866TGY 508615 ENCODE Processing Pipeline 82b151d0e6daff158d69757dd6837a4e https://www.encodeproject.org/files/ENCFF065VOT/@@download/ENCFF065VOT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF504IHQ bigBed narrowPeak optimal idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF065VOT 954703 ENCODE Processing Pipeline fefa4d83972da8c8bc046237c193e4eb https://www.encodeproject.org/files/ENCFF504IHQ/@@download/ENCFF504IHQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF798PVM bigWig signal p-value ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF533OJM, ENCFF810LLR 1575912537 ENCODE Processing Pipeline 30700297431439bad959a62af3c70724 https://www.encodeproject.org/files/ENCFF798PVM/@@download/ENCFF798PVM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF815HFG bigWig signal p-value ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF533OJM, ENCFF794NBJ, ENCFF810LLR 1901624391 ENCODE Processing Pipeline 9324582de279871169304e230703abae https://www.encodeproject.org/files/ENCFF815HFG/@@download/ENCFF815HFG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF637AHL bigWig signal p-value ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF794NBJ, ENCFF810LLR 1984596362 ENCODE Processing Pipeline e3e000eaf84578e0f41ea1ad78285ea5 https://www.encodeproject.org/files/ENCFF637AHL/@@download/ENCFF637AHL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF896BLO bigWig fold change over control ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF533OJM, ENCFF810LLR 1844838426 ENCODE Processing Pipeline 69e12ccaa53ce4df8ae30e0fb3c8443e https://www.encodeproject.org/files/ENCFF896BLO/@@download/ENCFF896BLO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF606XJK bigWig fold change over control ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF794NBJ, ENCFF810LLR 2029060645 ENCODE Processing Pipeline f3a6f3b8f8888fb6f2a1c1408ec40bea https://www.encodeproject.org/files/ENCFF606XJK/@@download/ENCFF606XJK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF662TPP bigWig fold change over control ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF533OJM, ENCFF794NBJ, ENCFF810LLR 2620522133 ENCODE Processing Pipeline 484657d69aa5857682d5fb6ebca79496 https://www.encodeproject.org/files/ENCFF662TPP/@@download/ENCFF662TPP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF461RBN bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF533OJM, ENCFF810LLR 7088766 ENCODE Processing Pipeline 2b82446d1a8288a56a45769221794605 https://www.encodeproject.org/files/ENCFF461RBN/@@download/ENCFF461RBN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF444RWZ bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF794NBJ, ENCFF810LLR 7238477 ENCODE Processing Pipeline 2f002e0053667437f34ee2677e7af259 https://www.encodeproject.org/files/ENCFF444RWZ/@@download/ENCFF444RWZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF641SZL bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF533OJM, ENCFF794NBJ, ENCFF810LLR 7369657 ENCODE Processing Pipeline 67e76483efd3dbfcac8f0ecf934b42a7 https://www.encodeproject.org/files/ENCFF641SZL/@@download/ENCFF641SZL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF593PUU bigBed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF461RBN 13296036 ENCODE Processing Pipeline cad1f49800081719e4f8f492659da0de https://www.encodeproject.org/files/ENCFF593PUU/@@download/ENCFF593PUU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF261LYN bigBed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF641SZL 13258371 ENCODE Processing Pipeline 57c8d3a386c39a14f44c7714a45becb3 https://www.encodeproject.org/files/ENCFF261LYN/@@download/ENCFF261LYN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF088AES bigBed narrowPeak conservative idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF342CWI 822902 ENCODE Processing Pipeline 5606489fcd2961cc0fb69b6467b6827a https://www.encodeproject.org/files/ENCFF088AES/@@download/ENCFF088AES.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF673SWL bigBed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF444RWZ 13195500 ENCODE Processing Pipeline 993640c658cfd55f00938c532a07959d https://www.encodeproject.org/files/ENCFF673SWL/@@download/ENCFF673SWL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF473AGH bed narrowPeak optimal idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF419RSJ, ENCFF444RWZ, ENCFF461RBN, ENCFF641SZL 499924 ENCODE Processing Pipeline 7ccf76e7b830832f025918a7b9403cb5 https://www.encodeproject.org/files/ENCFF473AGH/@@download/ENCFF473AGH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF342CWI bed narrowPeak conservative idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF419RSJ, ENCFF444RWZ, ENCFF461RBN, ENCFF641SZL 421708 ENCODE Processing Pipeline 0018cc178188e6d6c3d5766d4ba7aa8f https://www.encodeproject.org/files/ENCFF342CWI/@@download/ENCFF342CWI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF700MBG bigBed narrowPeak optimal idr thresholded peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF473AGH 944717 ENCODE Processing Pipeline c58ff100fd565f6a8aef04c2e69d8378 https://www.encodeproject.org/files/ENCFF700MBG/@@download/ENCFF700MBG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF344GQE fastq reads ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 1 76 paired-ended 1 ENCFF782UKV 1406189097 Bradley Bernstein, Broad 75c84e28f05e3ba12aad2dbc754d707a https://www.encodeproject.org/files/ENCFF344GQE/@@download/ENCFF344GQE.fastq.gz Illumina HiSeq 2500 /files/ENCFF274RNW/, /files/ENCFF460JSA/, /files/ENCFF569WIS/, /files/ENCFF780VKF/, /files/ENCFF888OQB/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF810LAW fastq reads ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 1 76 paired-ended 1 ENCFF501TZH 1024844175 Bradley Bernstein, Broad 1bf79e609050efba72c89bc3adb25a61 https://www.encodeproject.org/files/ENCFF810LAW/@@download/ENCFF810LAW.fastq.gz Illumina HiSeq 2500 /files/ENCFF105BSH/, /files/ENCFF283SSQ/, /files/ENCFF377FRL/, /files/ENCFF601FJT/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF501TZH fastq reads ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 1 76 paired-ended 2 ENCFF810LAW 1059110762 Bradley Bernstein, Broad 155ee3f77b959e809ed11836242501cd https://www.encodeproject.org/files/ENCFF501TZH/@@download/ENCFF501TZH.fastq.gz Illumina HiSeq 2500 /files/ENCFF048VZV/, /files/ENCFF729MHV/, /files/ENCFF751CCF/, /files/ENCFF865TXE/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF782UKV fastq reads ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 1 76 paired-ended 2 ENCFF344GQE 1366708195 Bradley Bernstein, Broad 6ea60a48bc02c65753e6177c030d2755 https://www.encodeproject.org/files/ENCFF782UKV/@@download/ENCFF782UKV.fastq.gz Illumina HiSeq 2500 /files/ENCFF203UWC/, /files/ENCFF219EFK/, /files/ENCFF716RUC/, /files/ENCFF996AET/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF111OYZ bam unfiltered alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 76 ENCFF643CGH, ENCFF810LAW 1233146249 ENCODE Processing Pipeline 5ae318ab962d87c4332d813680b43a24 https://www.encodeproject.org/files/ENCFF111OYZ/@@download/ENCFF111OYZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF573MDR bam unfiltered alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 76 ENCFF344GQE, ENCFF807MUK 1681319376 ENCODE Processing Pipeline 2cea608507a907a335fdcadf6b802af9 https://www.encodeproject.org/files/ENCFF573MDR/@@download/ENCFF573MDR.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF237KDQ bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 76 ENCFF643CGH, ENCFF810LAW 589183668 ENCODE Processing Pipeline 8eb35ef5268dcf4fbec2a234b4e3081f https://www.encodeproject.org/files/ENCFF237KDQ/@@download/ENCFF237KDQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF663MHL bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 76 ENCFF807MUK, ENCFF810LAW 589011857 ENCODE Processing Pipeline 84d701e6e46d45a149d8f058c19830d3 https://www.encodeproject.org/files/ENCFF663MHL/@@download/ENCFF663MHL.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF601UJU bam unfiltered alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 76 ENCFF807MUK, ENCFF810LAW 1227131659 ENCODE Processing Pipeline c3bbd6cd16df51a687c78feeaae81216 https://www.encodeproject.org/files/ENCFF601UJU/@@download/ENCFF601UJU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF764XGN bam unfiltered alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 76 ENCFF344GQE, ENCFF643CGH 1689256206 ENCODE Processing Pipeline 9520ba48ea6e354546490edd13c2c719 https://www.encodeproject.org/files/ENCFF764XGN/@@download/ENCFF764XGN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF692DPL bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 76 ENCFF344GQE, ENCFF807MUK 892522468 ENCODE Processing Pipeline 8e13643e0b95d743cf87463d510a4c67 https://www.encodeproject.org/files/ENCFF692DPL/@@download/ENCFF692DPL.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF165ZAR bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 76 ENCFF344GQE, ENCFF643CGH 893017981 ENCODE Processing Pipeline b6b26d50a212785f86f2552f26f5461f https://www.encodeproject.org/files/ENCFF165ZAR/@@download/ENCFF165ZAR.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF203CUU bigWig signal p-value ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL, ENCFF692DPL 1589108334 ENCODE Processing Pipeline 10c1411b10ad984246cefcf526e9e719 https://www.encodeproject.org/files/ENCFF203CUU/@@download/ENCFF203CUU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF933WLG bigWig fold change over control ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF027OMV, ENCFF165ZAR, ENCFF322KCH 1007092564 ENCODE Processing Pipeline 76658baf4b61626fede8e1337a4b79ae https://www.encodeproject.org/files/ENCFF933WLG/@@download/ENCFF933WLG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF059WQG bigWig signal p-value ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF027OMV, ENCFF165ZAR, ENCFF237KDQ, ENCFF322KCH 1645893279 ENCODE Processing Pipeline fe077391e6309be65302faea0157a789 https://www.encodeproject.org/files/ENCFF059WQG/@@download/ENCFF059WQG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF363BRQ bigBed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF760DVH 13326567 ENCODE Processing Pipeline ae13be0884829f3f18ac89a9fcd8b0ce https://www.encodeproject.org/files/ENCFF363BRQ/@@download/ENCFF363BRQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF217MSE bigBed narrowPeak conservative idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF064OJL 336378 ENCODE Processing Pipeline 75fb90b8a6f6fa4d62431c60b60f47a2 https://www.encodeproject.org/files/ENCFF217MSE/@@download/ENCFF217MSE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF314ZKR bed narrowPeak optimal idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF419RSJ, ENCFF631RUF, ENCFF760DVH, ENCFF916JOY 166393 ENCODE Processing Pipeline 0ab020392180372e2ad3ca831abbf6b4 https://www.encodeproject.org/files/ENCFF314ZKR/@@download/ENCFF314ZKR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF065XQQ bigWig signal p-value ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF692DPL 1446783429 ENCODE Processing Pipeline ca983f3bea67d9a3661391ec77465242 https://www.encodeproject.org/files/ENCFF065XQQ/@@download/ENCFF065XQQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF359GBC bigWig signal p-value ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL 1409261007 ENCODE Processing Pipeline 72f71a4db11e9c145d080e07f99ce89a https://www.encodeproject.org/files/ENCFF359GBC/@@download/ENCFF359GBC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF645LRU bed narrowPeak conservative idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF001TDO, ENCFF253NDQ, ENCFF311GKF, ENCFF980FHO 159814 ENCODE Processing Pipeline c13434168ac01f27ccd2298092ae0375 https://www.encodeproject.org/files/ENCFF645LRU/@@download/ENCFF645LRU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF478KCU bed narrowPeak optimal idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF001TDO, ENCFF253NDQ, ENCFF311GKF, ENCFF980FHO 168481 ENCODE Processing Pipeline ca933600ea2d3517a032cb0412782c3e https://www.encodeproject.org/files/ENCFF478KCU/@@download/ENCFF478KCU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF496XLU bigBed narrowPeak optimal idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF478KCU 352559 ENCODE Processing Pipeline 704e38473c746630dea7f04013e7f868 https://www.encodeproject.org/files/ENCFF496XLU/@@download/ENCFF496XLU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF457VCC bigWig signal p-value ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF027OMV, ENCFF237KDQ, ENCFF322KCH 1399922067 ENCODE Processing Pipeline 1a0addb35e8a66e4c0fd4a297d736d55 https://www.encodeproject.org/files/ENCFF457VCC/@@download/ENCFF457VCC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF327JSZ bigWig fold change over control ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF027OMV, ENCFF165ZAR, ENCFF237KDQ, ENCFF322KCH 1372801676 ENCODE Processing Pipeline 5004590b702e36543a944ec28ca5f3f2 https://www.encodeproject.org/files/ENCFF327JSZ/@@download/ENCFF327JSZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF629XPG bigWig fold change over control ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL 798448595 ENCODE Processing Pipeline d7f7fca566cda22541b614f0b653ce9d https://www.encodeproject.org/files/ENCFF629XPG/@@download/ENCFF629XPG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF253NDQ bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL 5388530 ENCODE Processing Pipeline 620c5eaf1a861d712d3399bc8cbe4dd1 https://www.encodeproject.org/files/ENCFF253NDQ/@@download/ENCFF253NDQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF841QIV bigBed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF253NDQ 11815764 ENCODE Processing Pipeline 77ecd03703495c493003570909a7b105 https://www.encodeproject.org/files/ENCFF841QIV/@@download/ENCFF841QIV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF307SLA bigBed narrowPeak conservative idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF645LRU 339493 ENCODE Processing Pipeline 03dc29bab80e6211eb6151adda952ca3 https://www.encodeproject.org/files/ENCFF307SLA/@@download/ENCFF307SLA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF240IDP bigBed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF311GKF 11320062 ENCODE Processing Pipeline 5e25b34e2b0a67fe4adf73c0c51fa0cb https://www.encodeproject.org/files/ENCFF240IDP/@@download/ENCFF240IDP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF631RUF bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF027OMV, ENCFF165ZAR, ENCFF322KCH 5830566 ENCODE Processing Pipeline 2c8ae3be2b287171b6d16c323e8d3531 https://www.encodeproject.org/files/ENCFF631RUF/@@download/ENCFF631RUF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF916JOY bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF027OMV, ENCFF237KDQ, ENCFF322KCH 4788349 ENCODE Processing Pipeline 62d43e94aedc3941d512e356c778e482 https://www.encodeproject.org/files/ENCFF916JOY/@@download/ENCFF916JOY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF760DVH bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF027OMV, ENCFF165ZAR, ENCFF237KDQ, ENCFF322KCH 6368731 ENCODE Processing Pipeline 3a5cdcc14150df38eabca5f4e74addb7 https://www.encodeproject.org/files/ENCFF760DVH/@@download/ENCFF760DVH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF392JRE bigBed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF916JOY 9215170 ENCODE Processing Pipeline a6ba87f57a3fb79d9e222c77235ce114 https://www.encodeproject.org/files/ENCFF392JRE/@@download/ENCFF392JRE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF064OJL bed narrowPeak conservative idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF419RSJ, ENCFF631RUF, ENCFF760DVH, ENCFF916JOY 154819 ENCODE Processing Pipeline bbfee65d2bc42bfa4f54e56998bdd674 https://www.encodeproject.org/files/ENCFF064OJL/@@download/ENCFF064OJL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF350NXT bigWig fold change over control ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF692DPL 1008363878 ENCODE Processing Pipeline a0b9322fb2d16f4df329ef0a602ed7f8 https://www.encodeproject.org/files/ENCFF350NXT/@@download/ENCFF350NXT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF694VSU bigWig fold change over control ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL, ENCFF692DPL 1378395892 ENCODE Processing Pipeline d62ad6f5a63495de633586e6d5631cbd https://www.encodeproject.org/files/ENCFF694VSU/@@download/ENCFF694VSU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF980FHO bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL, ENCFF692DPL 6619924 ENCODE Processing Pipeline 746dcc745024fd454c8999677fc32678 https://www.encodeproject.org/files/ENCFF980FHO/@@download/ENCFF980FHO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF097VKW bigBed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF980FHO 13349150 ENCODE Processing Pipeline 913fb53c4979e26ac4c230cec06924d0 https://www.encodeproject.org/files/ENCFF097VKW/@@download/ENCFF097VKW.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF338NUR bigWig signal p-value ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF027OMV, ENCFF165ZAR, ENCFF322KCH 1471822494 ENCODE Processing Pipeline 0a52da43a01b3e7a1c7113ace25967fa https://www.encodeproject.org/files/ENCFF338NUR/@@download/ENCFF338NUR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF946TBX bigWig fold change over control ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF027OMV, ENCFF237KDQ, ENCFF322KCH 798565698 ENCODE Processing Pipeline 0925d712c272c30fa39997a0d8772fb7 https://www.encodeproject.org/files/ENCFF946TBX/@@download/ENCFF946TBX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF325DPC bigBed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF631RUF 11363733 ENCODE Processing Pipeline 11ada82f838ebfacbf0405b99c7593d9 https://www.encodeproject.org/files/ENCFF325DPC/@@download/ENCFF325DPC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF876KHP bigBed narrowPeak optimal idr thresholded peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1, 2 ENCFF314ZKR 353791 ENCODE Processing Pipeline e0d5a9a18df6e26de0bf516a6af37dc2 https://www.encodeproject.org/files/ENCFF876KHP/@@download/ENCFF876KHP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF311GKF bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF692DPL 5869158 ENCODE Processing Pipeline 6beb95c44ba95c65859c201055626a31 https://www.encodeproject.org/files/ENCFF311GKF/@@download/ENCFF311GKF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF245FGQ fastq reads ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 1 ENCFF687NYU 4051535439 Michael Snyder, Stanford c252db6ce59c7407d1f786505c094388 https://www.encodeproject.org/files/ENCFF245FGQ/@@download/ENCFF245FGQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF687NYU fastq reads ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 2 ENCFF245FGQ 4123547327 Michael Snyder, Stanford 6b608267aed747d3abdf5cff28adaaf1 https://www.encodeproject.org/files/ENCFF687NYU/@@download/ENCFF687NYU.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF471MSL bam unfiltered alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 100 ENCFF245FGQ, ENCFF643CGH, ENCFF687NYU 7663177321 ENCODE Processing Pipeline 27f7231c4bde3d798f1476675026819a https://www.encodeproject.org/files/ENCFF471MSL/@@download/ENCFF471MSL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF947HAK bam unfiltered alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 100 ENCFF245FGQ, ENCFF687NYU, ENCFF807MUK 7658990696 ENCODE Processing Pipeline 63df57c07d7fbd6b728ffdd546f8bb56 https://www.encodeproject.org/files/ENCFF947HAK/@@download/ENCFF947HAK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF475NYJ bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 100 ENCFF245FGQ, ENCFF687NYU, ENCFF807MUK 3968198949 ENCODE Processing Pipeline 27491f445c5a0a0b904b009cddab79b3 https://www.encodeproject.org/files/ENCFF475NYJ/@@download/ENCFF475NYJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF488QXW bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 100 ENCFF245FGQ, ENCFF643CGH, ENCFF687NYU 3970792660 ENCODE Processing Pipeline a8e23844ba622c8816cafb0c1ec4a5bd https://www.encodeproject.org/files/ENCFF488QXW/@@download/ENCFF488QXW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF170MQL bigWig signal p-value ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 1555525096 ENCODE Processing Pipeline 884876e968b1751d459af795c071159c https://www.encodeproject.org/files/ENCFF170MQL/@@download/ENCFF170MQL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF674IPA bigWig fold change over control ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 1543965005 ENCODE Processing Pipeline 417ceb7a37797816b15770f2099a3f5d https://www.encodeproject.org/files/ENCFF674IPA/@@download/ENCFF674IPA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF910ICX fastq reads ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF054RXK 2731332717 Michael Snyder, Stanford f2db695376100be490e5475d02422495 https://www.encodeproject.org/files/ENCFF910ICX/@@download/ENCFF910ICX.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF054RXK fastq reads ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF910ICX 3378061002 Michael Snyder, Stanford 7e2b6d7d855532e36eb81571fca8042f https://www.encodeproject.org/files/ENCFF054RXK/@@download/ENCFF054RXK.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF427OUC bam unfiltered alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 101 ENCFF054RXK, ENCFF807MUK, ENCFF910ICX 5874769516 ENCODE Processing Pipeline f810433b6881adedffd03f91f42b2b15 https://www.encodeproject.org/files/ENCFF427OUC/@@download/ENCFF427OUC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF218RCB bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 101 ENCFF054RXK, ENCFF807MUK, ENCFF910ICX 4573626630 ENCODE Processing Pipeline 500fc8a2de382c1f57bc866e72a4823b https://www.encodeproject.org/files/ENCFF218RCB/@@download/ENCFF218RCB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF095OXD bam unfiltered alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 101 ENCFF054RXK, ENCFF643CGH, ENCFF910ICX 5886335456 ENCODE Processing Pipeline c9c7d107744501b82e9c7b5fa847fb1a https://www.encodeproject.org/files/ENCFF095OXD/@@download/ENCFF095OXD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF714ZDZ bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 101 ENCFF054RXK, ENCFF643CGH, ENCFF910ICX 4577202873 ENCODE Processing Pipeline 9ff189281cadf9b031fd6c6f9acbea9f https://www.encodeproject.org/files/ENCFF714ZDZ/@@download/ENCFF714ZDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF631XLF bigWig fold change over control ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF218RCB, ENCFF447KVS, ENCFF823USR 1752136594 ENCODE Processing Pipeline 448473ff7d5af37c73fc774f306e5d85 https://www.encodeproject.org/files/ENCFF631XLF/@@download/ENCFF631XLF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF085DGL bigWig signal p-value ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF218RCB, ENCFF447KVS, ENCFF823USR 1787126891 ENCODE Processing Pipeline 598d3886148ece92bf86268ef52677d8 https://www.encodeproject.org/files/ENCFF085DGL/@@download/ENCFF085DGL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF688UTZ bigWig signal p-value ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF218RCB, ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 1639098180 ENCODE Processing Pipeline 0cb39326ba1608c1f7b49d46c7bb835e https://www.encodeproject.org/files/ENCFF688UTZ/@@download/ENCFF688UTZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF002SZE bigWig signal p-value ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF191XYH, ENCFF488QXW, ENCFF746SKT 1339612222 ENCODE Processing Pipeline 3d5f225e10f6fa2b53f66374a533b3b4 https://www.encodeproject.org/files/ENCFF002SZE/@@download/ENCFF002SZE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF285WPP bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 6829536 ENCODE Processing Pipeline a8871d5e0385670514ab856dd8898fdb https://www.encodeproject.org/files/ENCFF285WPP/@@download/ENCFF285WPP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF582UGH bigBed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF285WPP 13601464 ENCODE Processing Pipeline 9021c4050a8a1783a6a6c3c34aa60050 https://www.encodeproject.org/files/ENCFF582UGH/@@download/ENCFF582UGH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF331EEM bigBed narrowPeak conservative idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF945YFY 650720 ENCODE Processing Pipeline 10239f47be3352f20f5fd83696db1e65 https://www.encodeproject.org/files/ENCFF331EEM/@@download/ENCFF331EEM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF757QEJ bed narrowPeak optimal idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF285WPP, ENCFF469ARA, ENCFF528XEZ 515078 ENCODE Processing Pipeline e5d745a1392a7bfd777d6c9c0611a413 https://www.encodeproject.org/files/ENCFF757QEJ/@@download/ENCFF757QEJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF919TQM bigWig fold change over control ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF218RCB, ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 2214417108 ENCODE Processing Pipeline 4cf853ff0838da61af57c097ffabcf2c https://www.encodeproject.org/files/ENCFF919TQM/@@download/ENCFF919TQM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF469ARA bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF218RCB, ENCFF447KVS, ENCFF823USR 6702507 ENCODE Processing Pipeline 8f408a441ce4ac83fae5c687f7288e46 https://www.encodeproject.org/files/ENCFF469ARA/@@download/ENCFF469ARA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF016THZ bigWig signal p-value ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF191XYH, ENCFF488QXW, ENCFF714ZDZ, ENCFF746SKT 1908053049 ENCODE Processing Pipeline 4e40645abc6b27e29a79a8f1fb4dc03e https://www.encodeproject.org/files/ENCFF016THZ/@@download/ENCFF016THZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF789WIC bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF191XYH, ENCFF488QXW, ENCFF746SKT 6832286 ENCODE Processing Pipeline 4e205b1e623a6340872cd83c329ea4e6 https://www.encodeproject.org/files/ENCFF789WIC/@@download/ENCFF789WIC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF775BAT bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF191XYH, ENCFF714ZDZ, ENCFF746SKT 6724459 ENCODE Processing Pipeline 38d79e244576e9a8296a38d3497b62ac https://www.encodeproject.org/files/ENCFF775BAT/@@download/ENCFF775BAT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF528XEZ bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF218RCB, ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 7251600 ENCODE Processing Pipeline 7146d25c409a4b8f9b46c625b42e2968 https://www.encodeproject.org/files/ENCFF528XEZ/@@download/ENCFF528XEZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF011MEX bigWig signal p-value ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF191XYH, ENCFF714ZDZ, ENCFF746SKT 1377838822 ENCODE Processing Pipeline 496c9ed1a6775b3e960f58438e9ab39f https://www.encodeproject.org/files/ENCFF011MEX/@@download/ENCFF011MEX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF028XHI bigBed narrowPeak conservative idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF838FGJ 656042 ENCODE Processing Pipeline 65d91048f72e3516db7da239eabbcc84 https://www.encodeproject.org/files/ENCFF028XHI/@@download/ENCFF028XHI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF673HQU bigBed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF469ARA 11375195 ENCODE Processing Pipeline 8302eb1b7e493279ef2f962d590a58b0 https://www.encodeproject.org/files/ENCFF673HQU/@@download/ENCFF673HQU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF961PBB bigBed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF528XEZ 11377718 ENCODE Processing Pipeline e6f5adf1169be97d7da3eed1bf7ed3bc https://www.encodeproject.org/files/ENCFF961PBB/@@download/ENCFF961PBB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF320ZLJ bigWig fold change over control ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF191XYH, ENCFF488QXW, ENCFF746SKT 1552070058 ENCODE Processing Pipeline e63e61cd3f77b14a060b8287ebf2ee69 https://www.encodeproject.org/files/ENCFF320ZLJ/@@download/ENCFF320ZLJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF491QOF bigBed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF789WIC 13624270 ENCODE Processing Pipeline 4aaa700ac9be4b8625a462a9ac9981d4 https://www.encodeproject.org/files/ENCFF491QOF/@@download/ENCFF491QOF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF286VSX bigBed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF775BAT 11376297 ENCODE Processing Pipeline f4fe18283e3e84dd9ca1a0a4900043ef https://www.encodeproject.org/files/ENCFF286VSX/@@download/ENCFF286VSX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF452VLA bed narrowPeak optimal idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF419RSJ, ENCFF444WJT, ENCFF775BAT, ENCFF789WIC 516220 ENCODE Processing Pipeline e698c61740467581f5c0747adeb36e00 https://www.encodeproject.org/files/ENCFF452VLA/@@download/ENCFF452VLA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF945YFY bed narrowPeak conservative idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF285WPP, ENCFF469ARA, ENCFF528XEZ 339958 ENCODE Processing Pipeline a775601739a761bb439c61409cb3ce73 https://www.encodeproject.org/files/ENCFF945YFY/@@download/ENCFF945YFY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF035DHR bigBed narrowPeak optimal idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF757QEJ 893462 ENCODE Processing Pipeline 4c958e507633bc443a375f43ff680586 https://www.encodeproject.org/files/ENCFF035DHR/@@download/ENCFF035DHR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF490XAQ bigWig fold change over control ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 ENCFF191XYH, ENCFF714ZDZ, ENCFF746SKT 1733745351 ENCODE Processing Pipeline f74308b701629843a2a92804219b48b7 https://www.encodeproject.org/files/ENCFF490XAQ/@@download/ENCFF490XAQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF444WJT bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF191XYH, ENCFF488QXW, ENCFF714ZDZ, ENCFF746SKT 7254189 ENCODE Processing Pipeline c9e88ddf4a0a46f2f6f62d0d8fb3abbb https://www.encodeproject.org/files/ENCFF444WJT/@@download/ENCFF444WJT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF224IXF bigWig fold change over control ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF191XYH, ENCFF488QXW, ENCFF714ZDZ, ENCFF746SKT 2234834161 ENCODE Processing Pipeline 1d409f3ee998994045d92fbae74205c4 https://www.encodeproject.org/files/ENCFF224IXF/@@download/ENCFF224IXF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF878MTY bigBed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF444WJT 11396101 ENCODE Processing Pipeline 6dc8c7e88d8f4738913a952f30810f7f https://www.encodeproject.org/files/ENCFF878MTY/@@download/ENCFF878MTY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF838FGJ bed narrowPeak conservative idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF419RSJ, ENCFF444WJT, ENCFF775BAT, ENCFF789WIC 342865 ENCODE Processing Pipeline 6bead01547dbe0def7f04e4c186f6250 https://www.encodeproject.org/files/ENCFF838FGJ/@@download/ENCFF838FGJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF432VHZ bigBed narrowPeak optimal idr thresholded peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF452VLA 899044 ENCODE Processing Pipeline ec7e651d3e3f34c06a15174797e6dbe8 https://www.encodeproject.org/files/ENCFF432VHZ/@@download/ENCFF432VHZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF858IJQ bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF804QYW, ENCFF807MUK 6347199713 ENCODE Processing Pipeline 5610501d0d24943e9a362f8db5f6523d https://www.encodeproject.org/files/ENCFF858IJQ/@@download/ENCFF858IJQ.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF656OGK bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF807MUK 5693896030 ENCODE Processing Pipeline c187ad21c2a9028271ca8dc2782a62d8 https://www.encodeproject.org/files/ENCFF656OGK/@@download/ENCFF656OGK.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF021DVV fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF804QYW 2974814577 Michael Snyder, Stanford acdb9d21d06cd2797e6658cc40855f63 SRA:SRR5111759 https://www.encodeproject.org/files/ENCFF021DVV/@@download/ENCFF021DVV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF804QYW fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF021DVV 3060076536 Michael Snyder, Stanford d0f917270f189b54cea0dbd8e189d89b SRA:SRR5111759 https://www.encodeproject.org/files/ENCFF804QYW/@@download/ENCFF804QYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF203MXC fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF454FRC 2676622899 Michael Snyder, Stanford 4e1e3bfe0cf0d8f407eb3a94c5c7d260 SRA:SRR5111758 https://www.encodeproject.org/files/ENCFF203MXC/@@download/ENCFF203MXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF454FRC fastq reads ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF203MXC 2761437683 Michael Snyder, Stanford 8d61ef1e66603af5c6b4654936670895 SRA:SRR5111758 https://www.encodeproject.org/files/ENCFF454FRC/@@download/ENCFF454FRC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF069GGB bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF203MXC, ENCFF454FRC, ENCFF807MUK 4262454189 ENCODE Processing Pipeline 8c0b481c238b9a79302e218d2f32c71f https://www.encodeproject.org/files/ENCFF069GGB/@@download/ENCFF069GGB.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF076TDR bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF021DVV, ENCFF804QYW, ENCFF807MUK 4838364981 ENCODE Processing Pipeline ada73eb224f97ed0790302ce10bc42e1 https://www.encodeproject.org/files/ENCFF076TDR/@@download/ENCFF076TDR.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF153IFP bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 1247637528 ENCODE Processing Pipeline 072953dd4cb1bc53f976b7d215519f18 https://www.encodeproject.org/files/ENCFF153IFP/@@download/ENCFF153IFP.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF657OOK bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 6949366 ENCODE Processing Pipeline 0b82578fd9aa8ce31b245ccb03ab8274 https://www.encodeproject.org/files/ENCFF657OOK/@@download/ENCFF657OOK.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF888JKW bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 1200146734 ENCODE Processing Pipeline 29e9ef92a88bc97320f73509acff63a9 https://www.encodeproject.org/files/ENCFF888JKW/@@download/ENCFF888JKW.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF796WLJ bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF069GGB, ENCFF076TDR, ENCFF941TZZ 1500265363 ENCODE Processing Pipeline a7a59324cb378be78245589bcd391245 https://www.encodeproject.org/files/ENCFF796WLJ/@@download/ENCFF796WLJ.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF638CVU bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 1008790409 ENCODE Processing Pipeline f2b0ea0abc46ffd8f86fdc545573400f https://www.encodeproject.org/files/ENCFF638CVU/@@download/ENCFF638CVU.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF336TIR bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 1139862217 ENCODE Processing Pipeline e663bc8b30e47ff372f6179b54300257 https://www.encodeproject.org/files/ENCFF336TIR/@@download/ENCFF336TIR.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF966NTL bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 6885626 ENCODE Processing Pipeline 95251238f90a925144754906d4a9c29d https://www.encodeproject.org/files/ENCFF966NTL/@@download/ENCFF966NTL.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF942NGM bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF069GGB, ENCFF076TDR, ENCFF941TZZ 7035532 ENCODE Processing Pipeline b9e98ecd521665b98c679800dc788ac3 https://www.encodeproject.org/files/ENCFF942NGM/@@download/ENCFF942NGM.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF319DUB bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF069GGB, ENCFF076TDR, ENCFF941TZZ 1827129700 ENCODE Processing Pipeline dee0650123f1079f90eb665def5a13c2 https://www.encodeproject.org/files/ENCFF319DUB/@@download/ENCFF319DUB.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF172EZZ bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF942NGM 12245077 ENCODE Processing Pipeline e142301e12dbf65b18ade02ee6fa0857 https://www.encodeproject.org/files/ENCFF172EZZ/@@download/ENCFF172EZZ.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF251PIF bigBed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF887NAI 1508972 ENCODE Processing Pipeline ad3af6c275637c2dadbec20b8d8c0da9 https://www.encodeproject.org/files/ENCFF251PIF/@@download/ENCFF251PIF.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status ENCFF881VZH bed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF657OOK, ENCFF942NGM, ENCFF966NTL 755519 ENCODE Processing Pipeline 891a679537433a7e0e320f60a84f3079 https://www.encodeproject.org/files/ENCFF881VZH/@@download/ENCFF881VZH.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF710DNL bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF657OOK 12497687 ENCODE Processing Pipeline d499e329e0b675283f277c177d7042f4 https://www.encodeproject.org/files/ENCFF710DNL/@@download/ENCFF710DNL.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF297ZZR bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF966NTL 12295823 ENCODE Processing Pipeline d31a259ee0215087f4647d870f059966 https://www.encodeproject.org/files/ENCFF297ZZR/@@download/ENCFF297ZZR.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF161QAL bigBed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF734FHY 1512672 ENCODE Processing Pipeline ceb988b2e04d9289e88653817bb620f6 https://www.encodeproject.org/files/ENCFF161QAL/@@download/ENCFF161QAL.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status ENCFF173KPE bed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF657OOK, ENCFF942NGM, ENCFF966NTL 759703 ENCODE Processing Pipeline 7f99322160804166f10ede1034658a12 https://www.encodeproject.org/files/ENCFF173KPE/@@download/ENCFF173KPE.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF639QMC bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF643CGH 5693030576 ENCODE Processing Pipeline 80f51d40f82e4298467300e352a914e6 https://www.encodeproject.org/files/ENCFF639QMC/@@download/ENCFF639QMC.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF204VIF bam unfiltered alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF643CGH, ENCFF804QYW 6346792267 ENCODE Processing Pipeline 813a7bf0d0e128a97ff97f3b0fbe0c3c https://www.encodeproject.org/files/ENCFF204VIF/@@download/ENCFF204VIF.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF982QKE bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF643CGH 4270284184 ENCODE Processing Pipeline 91f2523d14916c138d5da7cebcc4aaed https://www.encodeproject.org/files/ENCFF982QKE/@@download/ENCFF982QKE.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF665BYT bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF643CGH, ENCFF804QYW 4846167445 ENCODE Processing Pipeline a8784721c7300f42a4a1a8f61dc17f0b https://www.encodeproject.org/files/ENCFF665BYT/@@download/ENCFF665BYT.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF725SIQ bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF665BYT, ENCFF879YMO 1366412710 ENCODE Processing Pipeline 416df7b8842c6bc550ceb41cd82cdd0b https://www.encodeproject.org/files/ENCFF725SIQ/@@download/ENCFF725SIQ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF311HUZ bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF879YMO, ENCFF982QKE 1202164658 ENCODE Processing Pipeline 8d12c6f554eba60df7e912682b06a6f1 https://www.encodeproject.org/files/ENCFF311HUZ/@@download/ENCFF311HUZ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF734KGV bigWig signal p-value ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF665BYT, ENCFF879YMO, ENCFF982QKE 1503029501 ENCODE Processing Pipeline fb900c214444b366925b2bace5b1cdb4 https://www.encodeproject.org/files/ENCFF734KGV/@@download/ENCFF734KGV.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF123MHD bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF665BYT, ENCFF879YMO 1245204397 ENCODE Processing Pipeline 80002efb5f9237304fefa3fda03f97d8 https://www.encodeproject.org/files/ENCFF123MHD/@@download/ENCFF123MHD.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF250VFO bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF879YMO, ENCFF982QKE 1146932359 ENCODE Processing Pipeline efd135978bc6161ea7e6d95e9658fb64 https://www.encodeproject.org/files/ENCFF250VFO/@@download/ENCFF250VFO.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF984HLU bigWig fold change over control ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF665BYT, ENCFF879YMO, ENCFF982QKE 1831947647 ENCODE Processing Pipeline 897f91f30857010a02f9a69a3fa1e322 https://www.encodeproject.org/files/ENCFF984HLU/@@download/ENCFF984HLU.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF500XME bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF665BYT, ENCFF879YMO 6856349 ENCODE Processing Pipeline 59e17e148585e98a623387e1f468f89f https://www.encodeproject.org/files/ENCFF500XME/@@download/ENCFF500XME.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF691SCS bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF500XME 12419620 ENCODE Processing Pipeline 8f0cd0fb26a040bfeb99396680d3deae https://www.encodeproject.org/files/ENCFF691SCS/@@download/ENCFF691SCS.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF916DGH bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF665BYT, ENCFF879YMO, ENCFF982QKE 6980732 ENCODE Processing Pipeline 8707ff06b8275b948578d4e725c1cb04 https://www.encodeproject.org/files/ENCFF916DGH/@@download/ENCFF916DGH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF580PSH bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF879YMO, ENCFF982QKE 6721025 ENCODE Processing Pipeline 788a4f8d3b35face5800889ee78d191a https://www.encodeproject.org/files/ENCFF580PSH/@@download/ENCFF580PSH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF206LYB bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF580PSH 12120290 ENCODE Processing Pipeline 2176f4154128a65ea619704e84192545 https://www.encodeproject.org/files/ENCFF206LYB/@@download/ENCFF206LYB.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF809LON bigBed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF916DGH 12181560 ENCODE Processing Pipeline 27c7af3bfe0f795ceafebe3eebcfe659 https://www.encodeproject.org/files/ENCFF809LON/@@download/ENCFF809LON.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF394FTH bed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF500XME, ENCFF580PSH, ENCFF916DGH 756337 ENCODE Processing Pipeline 18516e8c315e49429e1051ee4c986e83 https://www.encodeproject.org/files/ENCFF394FTH/@@download/ENCFF394FTH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF331KLG bigBed narrowPeak conservative idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF394FTH 1505177 ENCODE Processing Pipeline 3a27491addeac4e1bd3dbd72288d9a56 https://www.encodeproject.org/files/ENCFF331KLG/@@download/ENCFF331KLG.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF125MEN bed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF500XME, ENCFF580PSH, ENCFF916DGH 755304 ENCODE Processing Pipeline 2610e6b2eef4a3d55bd50b7413b5f26b https://www.encodeproject.org/files/ENCFF125MEN/@@download/ENCFF125MEN.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF864GFC bigBed narrowPeak optimal idr thresholded peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF125MEN 1514430 ENCODE Processing Pipeline 22917fd6cfc348b2b93746f04efffe44 https://www.encodeproject.org/files/ENCFF864GFC/@@download/ENCFF864GFC.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF168EDT bam unfiltered alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 50 ENCFF594DJD, ENCFF807MUK 1397852580 ENCODE Processing Pipeline 62ffa89a99e0ed0e790e1597d5d7bd76 https://www.encodeproject.org/files/ENCFF168EDT/@@download/ENCFF168EDT.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF585ZIB bam unfiltered alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 50 ENCFF059UOO, ENCFF807MUK 1663730296 ENCODE Processing Pipeline 5f65b7b570b753fa016b2e0b0e83bf4b https://www.encodeproject.org/files/ENCFF585ZIB/@@download/ENCFF585ZIB.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF594DJD fastq reads ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 1 50 single-ended 1346071011 Richard Myers, HAIB 17c2de2416ae7ab641667a457eaee8c5 SRA:SRR5339165 https://www.encodeproject.org/files/ENCFF594DJD/@@download/ENCFF594DJD.fastq.gz Illumina HiSeq 2000 /files/ENCFF735GUP/ released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF059UOO fastq reads ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 1 50 single-ended 1567972896 Richard Myers, HAIB 5910445ab773c53580f2c88bf5ee064d SRA:SRR5339166 https://www.encodeproject.org/files/ENCFF059UOO/@@download/ENCFF059UOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF527ZQY/ released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF614KAI bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF594DJD, ENCFF807MUK 1038047267 ENCODE Processing Pipeline 2d49c5e98c92a30891b6e465c5a497b9 https://www.encodeproject.org/files/ENCFF614KAI/@@download/ENCFF614KAI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF717AFR bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF059UOO, ENCFF807MUK 1295114250 ENCODE Processing Pipeline 70947b298f661756bcf7c6ca995b5a6e https://www.encodeproject.org/files/ENCFF717AFR/@@download/ENCFF717AFR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF108WXX bigWig signal p-value ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF078CCC, ENCFF717AFR, ENCFF847YWA 658142678 ENCODE Processing Pipeline aecb157220ae27129809ec4e9f068540 https://www.encodeproject.org/files/ENCFF108WXX/@@download/ENCFF108WXX.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF166EDF bigWig signal p-value ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF078CCC, ENCFF614KAI, ENCFF717AFR, ENCFF847YWA 751979200 ENCODE Processing Pipeline 24a432efeb25a65e65f4de15cb7a34e4 https://www.encodeproject.org/files/ENCFF166EDF/@@download/ENCFF166EDF.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF804APM bigWig signal p-value ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF614KAI, ENCFF847YWA 419175916 ENCODE Processing Pipeline c90cc85ca4be5fbc11d7a4bfa28d057e https://www.encodeproject.org/files/ENCFF804APM/@@download/ENCFF804APM.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF273NJG bigWig fold change over control ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF078CCC, ENCFF717AFR, ENCFF847YWA 616802593 ENCODE Processing Pipeline 9eede2165ac00c2a1d5aaf45178b5f43 https://www.encodeproject.org/files/ENCFF273NJG/@@download/ENCFF273NJG.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF849XRU bigWig fold change over control ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF614KAI, ENCFF847YWA 398479934 ENCODE Processing Pipeline 84d8e80d328fcd4d0c117c13d931fd7c https://www.encodeproject.org/files/ENCFF849XRU/@@download/ENCFF849XRU.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF199WOT bigWig fold change over control ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF078CCC, ENCFF614KAI, ENCFF717AFR, ENCFF847YWA 885966607 ENCODE Processing Pipeline 6073f9761d577ddb81ff3916dc322951 https://www.encodeproject.org/files/ENCFF199WOT/@@download/ENCFF199WOT.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF374VVK bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF614KAI, ENCFF847YWA 5887321 ENCODE Processing Pipeline 0574365e7173847c27054ce4d978e898 https://www.encodeproject.org/files/ENCFF374VVK/@@download/ENCFF374VVK.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF448WRI bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF078CCC, ENCFF717AFR, ENCFF847YWA 5886975 ENCODE Processing Pipeline da88e7d71d900b6a270281512bd42a68 https://www.encodeproject.org/files/ENCFF448WRI/@@download/ENCFF448WRI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF520RNS bigBed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF448WRI 11521727 ENCODE Processing Pipeline f9e7ecc1555c1884e3e164055d8a9834 https://www.encodeproject.org/files/ENCFF520RNS/@@download/ENCFF520RNS.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF466TRI bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF078CCC, ENCFF614KAI, ENCFF717AFR, ENCFF847YWA 6610427 ENCODE Processing Pipeline f12ebf10b9d9be60e80a0625b46bca45 https://www.encodeproject.org/files/ENCFF466TRI/@@download/ENCFF466TRI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF444BKL bigBed narrowPeak conservative idr thresholded peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF593SAN 1575302 ENCODE Processing Pipeline d74dd7f377630ea2bccc8836bc245f44 https://www.encodeproject.org/files/ENCFF444BKL/@@download/ENCFF444BKL.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF321FDD bigBed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF466TRI 14001815 ENCODE Processing Pipeline 1fe338a0296593568c841c7afd5776da https://www.encodeproject.org/files/ENCFF321FDD/@@download/ENCFF321FDD.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF792ZHJ bigBed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF374VVK 13409631 ENCODE Processing Pipeline b547e9099ff3d1d2c437b0d9dc7decf2 https://www.encodeproject.org/files/ENCFF792ZHJ/@@download/ENCFF792ZHJ.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF593SAN bed narrowPeak conservative idr thresholded peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF001TDO, ENCFF374VVK, ENCFF448WRI, ENCFF466TRI 929713 ENCODE Processing Pipeline 30add6c5cd0f68684d714b10a71bee02 https://www.encodeproject.org/files/ENCFF593SAN/@@download/ENCFF593SAN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF375QZM bigBed narrowPeak optimal idr thresholded peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF846JKX 1619733 ENCODE Processing Pipeline ae6ffed987d80f6fd1de7b4e9593e0e9 https://www.encodeproject.org/files/ENCFF375QZM/@@download/ENCFF375QZM.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF846JKX bed narrowPeak optimal idr thresholded peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF001TDO, ENCFF374VVK, ENCFF448WRI, ENCFF466TRI 965790 ENCODE Processing Pipeline 3b292306bf576550c445db298c444e3e https://www.encodeproject.org/files/ENCFF846JKX/@@download/ENCFF846JKX.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF535LOU bam unfiltered alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 50 ENCFF594DJD, ENCFF643CGH 1400607097 ENCODE Processing Pipeline e2e1aab68ef820cf8a966da1f924a928 https://www.encodeproject.org/files/ENCFF535LOU/@@download/ENCFF535LOU.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF969FLL bam unfiltered alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 50 ENCFF059UOO, ENCFF643CGH 1667595242 ENCODE Processing Pipeline f7370672538df0c7732661864152246d https://www.encodeproject.org/files/ENCFF969FLL/@@download/ENCFF969FLL.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF955RIY bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 50 ENCFF594DJD, ENCFF643CGH 1037504441 ENCODE Processing Pipeline 27efa5bb3f3a19355dd96c523873d81f https://www.encodeproject.org/files/ENCFF955RIY/@@download/ENCFF955RIY.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF337KIG bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 50 ENCFF059UOO, ENCFF643CGH 1294723815 ENCODE Processing Pipeline a87ccba8d1b2f0b87d9a3e0455537ed4 https://www.encodeproject.org/files/ENCFF337KIG/@@download/ENCFF337KIG.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF548ACS bigWig signal p-value ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF156BNP, ENCFF291JPZ, ENCFF337KIG 728154726 ENCODE Processing Pipeline 695408db35867dfecec3c635d135e767 https://www.encodeproject.org/files/ENCFF548ACS/@@download/ENCFF548ACS.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF139PGF bigWig signal p-value ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF156BNP, ENCFF955RIY 419798840 ENCODE Processing Pipeline c2b26b520f1d05532ce42e5c5c136fdb https://www.encodeproject.org/files/ENCFF139PGF/@@download/ENCFF139PGF.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF994IUG bigWig signal p-value ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF156BNP, ENCFF291JPZ, ENCFF337KIG, ENCFF955RIY 782627675 ENCODE Processing Pipeline de9a29463a34f46f53ac1753925b4f98 https://www.encodeproject.org/files/ENCFF994IUG/@@download/ENCFF994IUG.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF513QHS bigWig fold change over control ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF156BNP, ENCFF291JPZ, ENCFF337KIG, ENCFF955RIY 911773193 ENCODE Processing Pipeline c92cdd9c19d44f25eb9ffa067ed63685 https://www.encodeproject.org/files/ENCFF513QHS/@@download/ENCFF513QHS.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF112TRV bigBed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF008LIL 13349885 ENCODE Processing Pipeline 6eefbddd791f70a983f312c308a680d1 https://www.encodeproject.org/files/ENCFF112TRV/@@download/ENCFF112TRV.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF236YNF bigWig fold change over control ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF156BNP, ENCFF291JPZ, ENCFF337KIG 617638950 ENCODE Processing Pipeline d90062ce33fb451cea7cd2eeef001a8c https://www.encodeproject.org/files/ENCFF236YNF/@@download/ENCFF236YNF.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF008LIL bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF156BNP, ENCFF955RIY 5756910 ENCODE Processing Pipeline c015b93acf8ee76a39d8ac7abcd3923c https://www.encodeproject.org/files/ENCFF008LIL/@@download/ENCFF008LIL.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF329EKU bigBed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF467MVO 11466715 ENCODE Processing Pipeline b2332e9df801d608a0476960fc76466b https://www.encodeproject.org/files/ENCFF329EKU/@@download/ENCFF329EKU.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF568JRC bigBed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF264FDU 13997286 ENCODE Processing Pipeline 1efc48e4c4f22d6c8973357d4e7a62d1 https://www.encodeproject.org/files/ENCFF568JRC/@@download/ENCFF568JRC.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF081TVG bed narrowPeak optimal idr thresholded peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF008LIL, ENCFF264FDU, ENCFF419RSJ, ENCFF467MVO 931457 ENCODE Processing Pipeline e1fc73741161fed5057c55788a8fe2fe https://www.encodeproject.org/files/ENCFF081TVG/@@download/ENCFF081TVG.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF813NOM bigBed narrowPeak optimal idr thresholded peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF081TVG 1577966 ENCODE Processing Pipeline 61bff085f4118dcce0da20b862e89bef https://www.encodeproject.org/files/ENCFF813NOM/@@download/ENCFF813NOM.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF152BRF bigWig fold change over control ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF156BNP, ENCFF955RIY 398551974 ENCODE Processing Pipeline 623b3b686359749176e8a17387e3fb2d https://www.encodeproject.org/files/ENCFF152BRF/@@download/ENCFF152BRF.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF264FDU bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF156BNP, ENCFF291JPZ, ENCFF337KIG, ENCFF955RIY 6489478 ENCODE Processing Pipeline 2e25c37faddaccafefc2c9dfba65f863 https://www.encodeproject.org/files/ENCFF264FDU/@@download/ENCFF264FDU.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF467MVO bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF156BNP, ENCFF291JPZ, ENCFF337KIG 5717627 ENCODE Processing Pipeline 16d3c5a32fd4a581263cd6b16026eea6 https://www.encodeproject.org/files/ENCFF467MVO/@@download/ENCFF467MVO.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF000XWX bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XXK 394510111 Michael Snyder, Stanford 8347116df51ccfc8e2fc4d0ebf4cea37 https://www.encodeproject.org/files/ENCFF000XWX/@@download/ENCFF000XWX.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XWY bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XXL 362095634 Michael Snyder, Stanford 08392820c0eaa85eb6930433c587663b https://www.encodeproject.org/files/ENCFF000XWY/@@download/ENCFF000XWY.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XWZ bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKW 2556285 Michael Snyder, Stanford b46372a6cd0b75f870d52f884b38c2eb https://www.encodeproject.org/files/ENCFF000XWZ/@@download/ENCFF000XWZ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XXA bigWig signal ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 446051766 Michael Snyder, Stanford cb899ba80e87dc39c1b6d0717977c17c https://www.encodeproject.org/files/ENCFF000XXA/@@download/ENCFF000XXA.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XXK fastq reads ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 955461557 Michael Snyder, Stanford 74c3d2770ab3fb04bbc0ead2bc565579 https://www.encodeproject.org/files/ENCFF000XXK/@@download/ENCFF000XXK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XXL fastq reads ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 750638282 Michael Snyder, Stanford a72cf04286171df5cf71358538807e42 https://www.encodeproject.org/files/ENCFF000XXL/@@download/ENCFF000XXL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKW bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1127334 Michael Snyder, Stanford 1420969df685b6fccc6412a01d502d8e https://www.encodeproject.org/files/ENCFF001VKW/@@download/ENCFF001VKW.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CUS bed narrowPeak optimal idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 892862 ENCODE Consortium Analysis Working Group e96e23464661bb743565b9ce1f3bb9d0 https://www.encodeproject.org/files/ENCFF002CUS/@@download/ENCFF002CUS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF476OQY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUS 1842818 ENCODE Consortium f6e9224f42ae23a9963e6657202f9e4a https://www.encodeproject.org/files/ENCFF476OQY/@@download/ENCFF476OQY.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF143MIJ bam unfiltered alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXK, ENCFF643CGH 1133859422 ENCODE Processing Pipeline f46b03dfd865b8283cf8b61867dcd07e https://www.encodeproject.org/files/ENCFF143MIJ/@@download/ENCFF143MIJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF200JRU bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXK, ENCFF643CGH 741839095 ENCODE Processing Pipeline ac32fac655aa0ee3aaf6dce15d0c57f9 https://www.encodeproject.org/files/ENCFF200JRU/@@download/ENCFF200JRU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF942GFS bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXL, ENCFF643CGH 624125176 ENCODE Processing Pipeline 4e61cde3978ccadb76229ecffa90eae1 https://www.encodeproject.org/files/ENCFF942GFS/@@download/ENCFF942GFS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF461CLC bam unfiltered alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXL, ENCFF643CGH 913930138 ENCODE Processing Pipeline 4491784d6f4ac48e8fa69750d16a2b94 https://www.encodeproject.org/files/ENCFF461CLC/@@download/ENCFF461CLC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF244OOU bam unfiltered alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXL, ENCFF807MUK 909925332 ENCODE Processing Pipeline 7304f01e720ed5b9ee3fb89ab078f9ce https://www.encodeproject.org/files/ENCFF244OOU/@@download/ENCFF244OOU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF881DRR bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXL, ENCFF807MUK 624409682 ENCODE Processing Pipeline 94d039fea84c690b690bf0236036e06a https://www.encodeproject.org/files/ENCFF881DRR/@@download/ENCFF881DRR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF978UQN bam unfiltered alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXK, ENCFF807MUK 1128646576 ENCODE Processing Pipeline 2b147d22b1157fcdfff03ea94709f3c7 https://www.encodeproject.org/files/ENCFF978UQN/@@download/ENCFF978UQN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF240KTH bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXK, ENCFF807MUK 742163027 ENCODE Processing Pipeline 359b9420556a662dc3edb0d43473993d https://www.encodeproject.org/files/ENCFF240KTH/@@download/ENCFF240KTH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF011TSJ bigWig signal p-value ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF200JRU 469519839 ENCODE Processing Pipeline 81326b5e80f2419db9f7a5d65a20aeba https://www.encodeproject.org/files/ENCFF011TSJ/@@download/ENCFF011TSJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF707NPA bigWig signal p-value ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF942GFS 460581352 ENCODE Processing Pipeline 83c04471cef61f568d0fb6fa8c26ca63 https://www.encodeproject.org/files/ENCFF707NPA/@@download/ENCFF707NPA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF653EFX bigWig signal p-value ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF200JRU, ENCFF942GFS 682235383 ENCODE Processing Pipeline e7c653ae98932fee4298f6539e37a1ba https://www.encodeproject.org/files/ENCFF653EFX/@@download/ENCFF653EFX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF256YKN bigWig fold change over control ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF200JRU, ENCFF942GFS 639408868 ENCODE Processing Pipeline 056c600d1f6bfc68005883c11e1737c8 https://www.encodeproject.org/files/ENCFF256YKN/@@download/ENCFF256YKN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF136ADF bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF200JRU 4756806 ENCODE Processing Pipeline 17ce6d9a71d37f3da54c22dbdcc4c631 https://www.encodeproject.org/files/ENCFF136ADF/@@download/ENCFF136ADF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF873VFG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF787LPL 1274353 ENCODE Processing Pipeline e563c9c9499ec645f733d7a7c70b8f0f https://www.encodeproject.org/files/ENCFF873VFG/@@download/ENCFF873VFG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF281ZBB bigWig fold change over control ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF200JRU 400917225 ENCODE Processing Pipeline cf863af896eb7a0da9d1f64a6d885a0f https://www.encodeproject.org/files/ENCFF281ZBB/@@download/ENCFF281ZBB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF472EFX bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF942GFS 4685976 ENCODE Processing Pipeline 6c9a3cbb949fe4dead5c313069f6cfee https://www.encodeproject.org/files/ENCFF472EFX/@@download/ENCFF472EFX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF812GFJ bigWig fold change over control ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF942GFS 363359529 ENCODE Processing Pipeline 4610d9a3614a3ce0f812b6a3437df877 https://www.encodeproject.org/files/ENCFF812GFJ/@@download/ENCFF812GFJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF482BLP bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF200JRU, ENCFF942GFS 5368583 ENCODE Processing Pipeline 566c9da542ca390a65d3d5a44fc8cabe https://www.encodeproject.org/files/ENCFF482BLP/@@download/ENCFF482BLP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF993KOH bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF136ADF 11167617 ENCODE Processing Pipeline b306b66c14610d37da7b6875dc2993f3 https://www.encodeproject.org/files/ENCFF993KOH/@@download/ENCFF993KOH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF147TWT bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF472EFX 10953295 ENCODE Processing Pipeline d6538e1d3a1383a571d16e33aacd5abe https://www.encodeproject.org/files/ENCFF147TWT/@@download/ENCFF147TWT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF506CEC bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF482BLP 11706827 ENCODE Processing Pipeline d0520f8fde43a9a4f19eb870041c571c https://www.encodeproject.org/files/ENCFF506CEC/@@download/ENCFF506CEC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF093XOJ bed narrowPeak optimal idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF136ADF, ENCFF419RSJ, ENCFF472EFX, ENCFF482BLP 705675 ENCODE Processing Pipeline 45aaf7dbf2897f4ee26025011c8a2d91 https://www.encodeproject.org/files/ENCFF093XOJ/@@download/ENCFF093XOJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF787LPL bed narrowPeak conservative idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF136ADF, ENCFF419RSJ, ENCFF472EFX, ENCFF482BLP 688916 ENCODE Processing Pipeline 692676d5204f534bcb46e1c0814e5b56 https://www.encodeproject.org/files/ENCFF787LPL/@@download/ENCFF787LPL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF254ECL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF093XOJ 1297079 ENCODE Processing Pipeline be297a4acc28723dd8320cbeb1956a83 https://www.encodeproject.org/files/ENCFF254ECL/@@download/ENCFF254ECL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF654TFE bigWig signal p-value ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF240KTH 602825810 ENCODE Processing Pipeline 66b3d28bc57ae6fff6fee9efbab0018a https://www.encodeproject.org/files/ENCFF654TFE/@@download/ENCFF654TFE.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946YCX bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF770CIC 11164600 ENCODE Processing Pipeline e02e4486232a6bc71ecfd005617200eb https://www.encodeproject.org/files/ENCFF946YCX/@@download/ENCFF946YCX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF684BWT bigWig signal p-value ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF240KTH, ENCFF881DRR 682180650 ENCODE Processing Pipeline 663cf6cf3467b6e35f4e419a549a7e8e https://www.encodeproject.org/files/ENCFF684BWT/@@download/ENCFF684BWT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF786WOY bigWig fold change over control ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF240KTH 399533815 ENCODE Processing Pipeline b0de494c91b62c6a0966ff38eace41ef https://www.encodeproject.org/files/ENCFF786WOY/@@download/ENCFF786WOY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF561VOO bigWig signal p-value ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF881DRR 511193659 ENCODE Processing Pipeline 47d039030c2b25c8d77994572ed207ce https://www.encodeproject.org/files/ENCFF561VOO/@@download/ENCFF561VOO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF223NYG bigWig fold change over control ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF881DRR 364022497 ENCODE Processing Pipeline d1aaa3018766486af684b93804ff27e2 https://www.encodeproject.org/files/ENCFF223NYG/@@download/ENCFF223NYG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF919FKU bigWig fold change over control ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF240KTH, ENCFF881DRR 639112681 ENCODE Processing Pipeline 0a1118fa44ff0443acf25a6eae7e2454 https://www.encodeproject.org/files/ENCFF919FKU/@@download/ENCFF919FKU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189ILE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF903MXX 1272218 ENCODE Processing Pipeline 5a67a7c684bd32759e5b3fd722db3344 https://www.encodeproject.org/files/ENCFF189ILE/@@download/ENCFF189ILE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF584YYH bed narrowPeak optimal idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF550URY, ENCFF741VOR, ENCFF770CIC 705911 ENCODE Processing Pipeline a82ee2006f39ecbc61fc9f369c4f5341 https://www.encodeproject.org/files/ENCFF584YYH/@@download/ENCFF584YYH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF464DVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF584YYH 1296803 ENCODE Processing Pipeline 37141a683df6d7b565dfec3f17e604a4 https://www.encodeproject.org/files/ENCFF464DVM/@@download/ENCFF464DVM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550URY bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF881DRR 4685837 ENCODE Processing Pipeline b560ca5254c568663b11e62a65ab9d16 https://www.encodeproject.org/files/ENCFF550URY/@@download/ENCFF550URY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF741VOR bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF240KTH, ENCFF881DRR 5372879 ENCODE Processing Pipeline 9c3fa296b79105ec4b643a062e77f7f9 https://www.encodeproject.org/files/ENCFF741VOR/@@download/ENCFF741VOR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF264AGW bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF550URY 10943422 ENCODE Processing Pipeline 7e35c9955e8e8508c40f12b71093efd6 https://www.encodeproject.org/files/ENCFF264AGW/@@download/ENCFF264AGW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF903MXX bed narrowPeak conservative idr thresholded peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF550URY, ENCFF741VOR, ENCFF770CIC 687778 ENCODE Processing Pipeline f70da726ef8214ad3c53862093838983 https://www.encodeproject.org/files/ENCFF903MXX/@@download/ENCFF903MXX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF770CIC bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF240KTH 4761321 ENCODE Processing Pipeline 8dbfb82d2a2a6c762ceab2ccaeff03c1 https://www.encodeproject.org/files/ENCFF770CIC/@@download/ENCFF770CIC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF010FQN bigBed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF741VOR 11704591 ENCODE Processing Pipeline 0e43e5430374a105f0a50b5550ec77ff https://www.encodeproject.org/files/ENCFF010FQN/@@download/ENCFF010FQN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF344MHB bam unfiltered alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF148LLM, ENCFF807MUK 1081491468 ENCODE Processing Pipeline a1e0e72db05addb795b5ef20012cf844 https://www.encodeproject.org/files/ENCFF344MHB/@@download/ENCFF344MHB.bam hg19 released missing genetic modification characterization characterization(s) pending review ENCFF228HJC bam unfiltered alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF444VXB, ENCFF807MUK 1622625253 ENCODE Processing Pipeline 29c6afe7082e86dca0b77d83b3563da5 https://www.encodeproject.org/files/ENCFF228HJC/@@download/ENCFF228HJC.bam hg19 released missing genetic modification characterization characterization(s) pending review ENCFF444VXB fastq reads ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1424430661 Richard Myers, HAIB a30eb74a9bb664d077719d5edc543152 SRA:SRR5331338 https://www.encodeproject.org/files/ENCFF444VXB/@@download/ENCFF444VXB.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released missing genetic modification characterization characterization(s) pending review ENCFF148LLM fastq reads ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 949258970 Richard Myers, HAIB 7eb8e18050aa09affa4673093b507e06 SRA:SRR5331339 https://www.encodeproject.org/files/ENCFF148LLM/@@download/ENCFF148LLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released missing genetic modification characterization characterization(s) pending review ENCFF837QKV bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF148LLM, ENCFF807MUK 823240766 ENCODE Processing Pipeline 619184733e70810c450003543a87cbd0 https://www.encodeproject.org/files/ENCFF837QKV/@@download/ENCFF837QKV.bam hg19 released missing genetic modification characterization characterization(s) pending review ENCFF447TYF bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF444VXB, ENCFF807MUK 1228720682 ENCODE Processing Pipeline d143a470edb4f209f216e736148a3fe6 https://www.encodeproject.org/files/ENCFF447TYF/@@download/ENCFF447TYF.bam hg19 released missing genetic modification characterization characterization(s) pending review ENCFF665DEC bigWig signal p-value ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF447TYF 818307379 ENCODE Processing Pipeline b7bcace9977feb12400659cc6f2dc27e https://www.encodeproject.org/files/ENCFF665DEC/@@download/ENCFF665DEC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review ENCFF034UVN bigWig signal p-value ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF837QKV 692121119 ENCODE Processing Pipeline c62788d22895a531ea664494f6327314 https://www.encodeproject.org/files/ENCFF034UVN/@@download/ENCFF034UVN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review ENCFF659EGI bigWig signal p-value ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF447TYF, ENCFF837QKV 982271092 ENCODE Processing Pipeline c29f87f10da103d2a62c0daf7fa448cc https://www.encodeproject.org/files/ENCFF659EGI/@@download/ENCFF659EGI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review ENCFF869DSO bigWig fold change over control ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF447TYF 691060708 ENCODE Processing Pipeline 0cccdbbb5876832042a891a8b51a16fb https://www.encodeproject.org/files/ENCFF869DSO/@@download/ENCFF869DSO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review ENCFF901VBK bigWig fold change over control ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF837QKV 520838732 ENCODE Processing Pipeline 16107d557cf83dfdd9f58b13c9c6b6cd https://www.encodeproject.org/files/ENCFF901VBK/@@download/ENCFF901VBK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review ENCFF145VGS bigWig fold change over control ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF447TYF, ENCFF837QKV 1014669057 ENCODE Processing Pipeline 82ae224bdfa99b2942489016e158ce83 https://www.encodeproject.org/files/ENCFF145VGS/@@download/ENCFF145VGS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review ENCFF551NSK bigBed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF089SHU 11669879 ENCODE Processing Pipeline d9002da885e85f58e5a91eb5d50cbc82 https://www.encodeproject.org/files/ENCFF551NSK/@@download/ENCFF551NSK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review ENCFF948LKX bed narrowPeak conservative idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF089SHU, ENCFF189NGD, ENCFF624BVW 61161 ENCODE Processing Pipeline 6bf4211ebb28bb585bfed486973ea06c https://www.encodeproject.org/files/ENCFF948LKX/@@download/ENCFF948LKX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF030HWZ bed narrowPeak optimal idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF089SHU, ENCFF189NGD, ENCFF624BVW 67700 ENCODE Processing Pipeline 31e9c7f935021b20bb5a136f5eb5d3e0 https://www.encodeproject.org/files/ENCFF030HWZ/@@download/ENCFF030HWZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF189NGD bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF837QKV 4759023 ENCODE Processing Pipeline 886ecf5439e7455261cced5fc2c31058 https://www.encodeproject.org/files/ENCFF189NGD/@@download/ENCFF189NGD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF624BVW bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF447TYF 5039056 ENCODE Processing Pipeline e1727509e123689203fbeea3fbb815b8 https://www.encodeproject.org/files/ENCFF624BVW/@@download/ENCFF624BVW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF991VTY bigBed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF624BVW 11158550 ENCODE Processing Pipeline a79f6aa2c62bbddb5b97dd684bfec63b https://www.encodeproject.org/files/ENCFF991VTY/@@download/ENCFF991VTY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review ENCFF035SSG bigBed narrowPeak conservative idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF948LKX 166040 ENCODE Processing Pipeline a63a39fee248b5c1ce4d389bc69bfcb8 https://www.encodeproject.org/files/ENCFF035SSG/@@download/ENCFF035SSG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review ENCFF089SHU bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF447TYF, ENCFF837QKV 5945369 ENCODE Processing Pipeline f27db7e818966d03ddf8bbf524186d49 https://www.encodeproject.org/files/ENCFF089SHU/@@download/ENCFF089SHU.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF389TPP bigBed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF189NGD 11128592 ENCODE Processing Pipeline b6e5bcb3efe74e28ec5f90e2c430af19 https://www.encodeproject.org/files/ENCFF389TPP/@@download/ENCFF389TPP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review ENCFF012AHM bigBed narrowPeak optimal idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF030HWZ 175269 ENCODE Processing Pipeline bc5229eea6797ee8f82bd4ef01a5a2cf https://www.encodeproject.org/files/ENCFF012AHM/@@download/ENCFF012AHM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review ENCFF120BPS bam unfiltered alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF148LLM, ENCFF643CGH 1085338929 ENCODE Processing Pipeline 2b0b18ed70277418069b62c2e1e669f2 https://www.encodeproject.org/files/ENCFF120BPS/@@download/ENCFF120BPS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF485ERR bam unfiltered alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF444VXB, ENCFF643CGH 1629386249 ENCODE Processing Pipeline 79b7c7f4fda16d0700a87794d022fa7e https://www.encodeproject.org/files/ENCFF485ERR/@@download/ENCFF485ERR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF515YFJ bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF148LLM, ENCFF643CGH 822971267 ENCODE Processing Pipeline 64f6784e055c1386a57c0d0a6b6b9b7a https://www.encodeproject.org/files/ENCFF515YFJ/@@download/ENCFF515YFJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF780DBH bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF444VXB, ENCFF643CGH 1228517931 ENCODE Processing Pipeline 73e313caca794c1a227168bdfba7ce93 https://www.encodeproject.org/files/ENCFF780DBH/@@download/ENCFF780DBH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF285JRI bigWig signal p-value ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF332SVJ, ENCFF780DBH 769550741 ENCODE Processing Pipeline 5438033e27abc8f685209532dd422be3 https://www.encodeproject.org/files/ENCFF285JRI/@@download/ENCFF285JRI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF488MSR bigWig signal p-value ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF332SVJ, ENCFF515YFJ 739350011 ENCODE Processing Pipeline 04939564d73798786c9d97b1b6dfddfe https://www.encodeproject.org/files/ENCFF488MSR/@@download/ENCFF488MSR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF953TOA bigWig signal p-value ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF332SVJ, ENCFF515YFJ, ENCFF780DBH 983930397 ENCODE Processing Pipeline 7e22ed8246219011fd4300e03ba4c18d https://www.encodeproject.org/files/ENCFF953TOA/@@download/ENCFF953TOA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF171JNY bigWig fold change over control ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF332SVJ, ENCFF780DBH 700648508 ENCODE Processing Pipeline 081b25efdab0f791f0a16b723032fdd3 https://www.encodeproject.org/files/ENCFF171JNY/@@download/ENCFF171JNY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF452EXE bigWig fold change over control ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF332SVJ, ENCFF515YFJ 529306262 ENCODE Processing Pipeline 469002d20c13c2913061fc356e622ed8 https://www.encodeproject.org/files/ENCFF452EXE/@@download/ENCFF452EXE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF278PDS bigWig fold change over control ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF332SVJ, ENCFF515YFJ, ENCFF780DBH 1013486550 ENCODE Processing Pipeline 68c90d23a22bb4c9407bdcf665b582ab https://www.encodeproject.org/files/ENCFF278PDS/@@download/ENCFF278PDS.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF522YTF bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF332SVJ, ENCFF780DBH 4783025 ENCODE Processing Pipeline 996eed7efbed03b85dcddfb59399286a https://www.encodeproject.org/files/ENCFF522YTF/@@download/ENCFF522YTF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF217XJC bigBed narrowPeak optimal idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF715PLB 173216 ENCODE Processing Pipeline 7990f17d421b086c32ae971436ac0cac https://www.encodeproject.org/files/ENCFF217XJC/@@download/ENCFF217XJC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF313YNI bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF332SVJ, ENCFF515YFJ, ENCFF780DBH 5665303 ENCODE Processing Pipeline e3738c7722a7a14f582bf9e13eff43c0 https://www.encodeproject.org/files/ENCFF313YNI/@@download/ENCFF313YNI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF929LAL bigBed narrowPeak conservative idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF539RBU 167266 ENCODE Processing Pipeline ec5938c3625897d9b48bc0c6df40b784 https://www.encodeproject.org/files/ENCFF929LAL/@@download/ENCFF929LAL.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF644UJA bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF332SVJ, ENCFF515YFJ 4434443 ENCODE Processing Pipeline 7b187a58788511e2c520599628303b57 https://www.encodeproject.org/files/ENCFF644UJA/@@download/ENCFF644UJA.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF924IKO bigBed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF522YTF 11061793 ENCODE Processing Pipeline 366369880c7b25304fe908262989d458 https://www.encodeproject.org/files/ENCFF924IKO/@@download/ENCFF924IKO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF676NKZ bigBed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF644UJA 10868759 ENCODE Processing Pipeline 54973137108c1e3aa25e3ee886d2ad11 https://www.encodeproject.org/files/ENCFF676NKZ/@@download/ENCFF676NKZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF834FKS bigBed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF313YNI 11648082 ENCODE Processing Pipeline 1e28f2899f250009580ef0ad134fcf07 https://www.encodeproject.org/files/ENCFF834FKS/@@download/ENCFF834FKS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF539RBU bed narrowPeak conservative idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF313YNI, ENCFF419RSJ, ENCFF522YTF, ENCFF644UJA 60685 ENCODE Processing Pipeline 4b8f00ffef20199a9dadd77f65ea9203 https://www.encodeproject.org/files/ENCFF539RBU/@@download/ENCFF539RBU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF715PLB bed narrowPeak optimal idr thresholded peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF313YNI, ENCFF419RSJ, ENCFF522YTF, ENCFF644UJA 64654 ENCODE Processing Pipeline a7aecaf01e510d88609e18f39450c557 https://www.encodeproject.org/files/ENCFF715PLB/@@download/ENCFF715PLB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF784CYN fastq reads ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF167UWT 2435390179 Michael Snyder, Stanford a54ef6d584664743576817ac1b60ad8a SRA:SRR5111438 https://www.encodeproject.org/files/ENCFF784CYN/@@download/ENCFF784CYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF575MKR fastq reads ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF902ARM 1910884856 Michael Snyder, Stanford 1db9912830fcb1673a08ba8751c37094 SRA:SRR5111437 https://www.encodeproject.org/files/ENCFF575MKR/@@download/ENCFF575MKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF167UWT fastq reads ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF784CYN 2521298556 Michael Snyder, Stanford ca1b75632eb07e6a647c57fb9304717d SRA:SRR5111438 https://www.encodeproject.org/files/ENCFF167UWT/@@download/ENCFF167UWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF902ARM fastq reads ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF575MKR 1960995486 Michael Snyder, Stanford 50de9c6bb09db20ecc0bc90bf6c13b9e SRA:SRR5111437 https://www.encodeproject.org/files/ENCFF902ARM/@@download/ENCFF902ARM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF679RNI bam unfiltered alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF575MKR, ENCFF643CGH, ENCFF902ARM 4367326154 ENCODE Processing Pipeline 3ac32e04639d3e6df98b2e58c55bfe42 https://www.encodeproject.org/files/ENCFF679RNI/@@download/ENCFF679RNI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF393XFG bam unfiltered alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF575MKR, ENCFF807MUK, ENCFF902ARM 4362023977 ENCODE Processing Pipeline 273a3ed1fe9d13e1de776327a529d35e https://www.encodeproject.org/files/ENCFF393XFG/@@download/ENCFF393XFG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF727DMH bam unfiltered alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF167UWT, ENCFF784CYN, ENCFF807MUK 5469446129 ENCODE Processing Pipeline 7a8c742e258f1dbfe892cb1d2fb1f139 https://www.encodeproject.org/files/ENCFF727DMH/@@download/ENCFF727DMH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF723DGR bam unfiltered alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF167UWT, ENCFF643CGH, ENCFF784CYN 5474930019 ENCODE Processing Pipeline dc48f53ddabdf69941b06aae63d596cd https://www.encodeproject.org/files/ENCFF723DGR/@@download/ENCFF723DGR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF031HZQ bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF575MKR, ENCFF807MUK, ENCFF902ARM 3801987378 ENCODE Processing Pipeline 522aac43f90414e9d49037d2a89d43f0 https://www.encodeproject.org/files/ENCFF031HZQ/@@download/ENCFF031HZQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF159AJM bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF575MKR, ENCFF643CGH, ENCFF902ARM 3803745390 ENCODE Processing Pipeline e43a657fcda10510df5d9aaddbf043ba https://www.encodeproject.org/files/ENCFF159AJM/@@download/ENCFF159AJM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF396LUF bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF167UWT, ENCFF643CGH, ENCFF784CYN 4723580143 ENCODE Processing Pipeline 3fd89b90a294efd154930e7602337d05 https://www.encodeproject.org/files/ENCFF396LUF/@@download/ENCFF396LUF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF097LQF bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF167UWT, ENCFF784CYN, ENCFF807MUK 4723478185 ENCODE Processing Pipeline 0b679ad0e007a7c6c4004873d8a73cc8 https://www.encodeproject.org/files/ENCFF097LQF/@@download/ENCFF097LQF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF846DNI bigWig signal p-value ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097LQF 1445425701 ENCODE Processing Pipeline e3a4fb9ee9b8d4468087171061c53cec https://www.encodeproject.org/files/ENCFF846DNI/@@download/ENCFF846DNI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF708DGT bigWig signal p-value ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF031HZQ 1256856437 ENCODE Processing Pipeline eb9390e7856d75308adeb741f5664512 https://www.encodeproject.org/files/ENCFF708DGT/@@download/ENCFF708DGT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF620EBL bigWig signal p-value ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF031HZQ, ENCFF097LQF 1442495900 ENCODE Processing Pipeline 9f3efc758ea1f0dea8478c15c7292b91 https://www.encodeproject.org/files/ENCFF620EBL/@@download/ENCFF620EBL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF816USG bigWig fold change over control ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097LQF 1383539872 ENCODE Processing Pipeline 42ddf99009be11e988ec05ba0915ff70 https://www.encodeproject.org/files/ENCFF816USG/@@download/ENCFF816USG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF639NKT bigWig fold change over control ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF031HZQ 1272461803 ENCODE Processing Pipeline bb08324b3df4d907195ec6423e7a6461 https://www.encodeproject.org/files/ENCFF639NKT/@@download/ENCFF639NKT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF411WNH bigWig fold change over control ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF031HZQ, ENCFF097LQF 1888869600 ENCODE Processing Pipeline 9bdd9975e04145eef97aaac8370f1123 https://www.encodeproject.org/files/ENCFF411WNH/@@download/ENCFF411WNH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF362URR bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097LQF 7000552 ENCODE Processing Pipeline 789e71b06e981cee6c0a7e10c28f76ff https://www.encodeproject.org/files/ENCFF362URR/@@download/ENCFF362URR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF892LCQ bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF031HZQ 6821619 ENCODE Processing Pipeline 459c0634df3efad1c60b1cea80eccc9c https://www.encodeproject.org/files/ENCFF892LCQ/@@download/ENCFF892LCQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF624YSW bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF031HZQ, ENCFF097LQF 7209023 ENCODE Processing Pipeline 3a249e8a7624973ad2860cca16566225 https://www.encodeproject.org/files/ENCFF624YSW/@@download/ENCFF624YSW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF329CZC bigBed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF362URR 13420396 ENCODE Processing Pipeline e6639e60c62af0b5661c6b787162809a https://www.encodeproject.org/files/ENCFF329CZC/@@download/ENCFF329CZC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF004SKU bigBed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892LCQ 13428426 ENCODE Processing Pipeline 4acddbcb8046992fd33db2f45109e09e https://www.encodeproject.org/files/ENCFF004SKU/@@download/ENCFF004SKU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF320ERT bigBed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF624YSW 13319648 ENCODE Processing Pipeline daba36fc6073c60b70e962a54c06bb50 https://www.encodeproject.org/files/ENCFF320ERT/@@download/ENCFF320ERT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF888SGJ bed narrowPeak conservative idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF362URR, ENCFF624YSW, ENCFF892LCQ 509282 ENCODE Processing Pipeline cf6cc5a2eced62ce0cbc104eaa2bc4b0 https://www.encodeproject.org/files/ENCFF888SGJ/@@download/ENCFF888SGJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF009VSK bigBed narrowPeak conservative idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF888SGJ 1061107 ENCODE Processing Pipeline ce160d1fb0f7fdc61f33cc1fa275625e https://www.encodeproject.org/files/ENCFF009VSK/@@download/ENCFF009VSK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF043BDV bed narrowPeak optimal idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF362URR, ENCFF624YSW, ENCFF892LCQ 629470 ENCODE Processing Pipeline 81a5c6a962e10b9a94f8f8abe6980f95 https://www.encodeproject.org/files/ENCFF043BDV/@@download/ENCFF043BDV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF467EQR bigBed narrowPeak optimal idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF043BDV 1243282 ENCODE Processing Pipeline c46254b44dbda8729b50e0b33a2fb304 https://www.encodeproject.org/files/ENCFF467EQR/@@download/ENCFF467EQR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF767VDC bigWig signal p-value ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF159AJM, ENCFF396LUF 1554159909 ENCODE Processing Pipeline b7a67f99277c8dc044e55896b1aca213 https://www.encodeproject.org/files/ENCFF767VDC/@@download/ENCFF767VDC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF432KXE bigWig fold change over control ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF396LUF 1389315276 ENCODE Processing Pipeline b7d6ff9eced3ee7f2aae7028c4fb7157 https://www.encodeproject.org/files/ENCFF432KXE/@@download/ENCFF432KXE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF275QKN bigWig signal p-value ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF396LUF 1382165754 ENCODE Processing Pipeline 906e9844bb20bb5df38d8125b38b3c4b https://www.encodeproject.org/files/ENCFF275QKN/@@download/ENCFF275QKN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF934KPV bigWig signal p-value ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159AJM 1242192262 ENCODE Processing Pipeline 924fb085ca7150a27929570a0b2dba61 https://www.encodeproject.org/files/ENCFF934KPV/@@download/ENCFF934KPV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF448FAS bigWig fold change over control ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF159AJM, ENCFF396LUF 1909826734 ENCODE Processing Pipeline ab5eda0501d14422094b4b4817185518 https://www.encodeproject.org/files/ENCFF448FAS/@@download/ENCFF448FAS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF770CIP bigWig fold change over control ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159AJM 1272524833 ENCODE Processing Pipeline edb1cef77b08a655dee114bb92529a4e https://www.encodeproject.org/files/ENCFF770CIP/@@download/ENCFF770CIP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF443XND bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF396LUF 6918791 ENCODE Processing Pipeline 44de4337bfc7efaaadc8b8814125c56a https://www.encodeproject.org/files/ENCFF443XND/@@download/ENCFF443XND.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF625HXV bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159AJM 6719751 ENCODE Processing Pipeline b714535d3f44028b38cf81ab8d4072e6 https://www.encodeproject.org/files/ENCFF625HXV/@@download/ENCFF625HXV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF469POD bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF159AJM, ENCFF396LUF 7221174 ENCODE Processing Pipeline 022b9b2285df340b5dd9054a84e06ab7 https://www.encodeproject.org/files/ENCFF469POD/@@download/ENCFF469POD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF120UER bigBed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF443XND 13408491 ENCODE Processing Pipeline 3d6d5d973ba9973335d6ab15ac4337d7 https://www.encodeproject.org/files/ENCFF120UER/@@download/ENCFF120UER.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF118NSY bed narrowPeak conservative idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF443XND, ENCFF469POD, ENCFF625HXV 522951 ENCODE Processing Pipeline 327d13af84abeb7fd97228195474f9d1 https://www.encodeproject.org/files/ENCFF118NSY/@@download/ENCFF118NSY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF916JZV bigBed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF625HXV 13435784 ENCODE Processing Pipeline 029d169abbc9b041c50440924284c430 https://www.encodeproject.org/files/ENCFF916JZV/@@download/ENCFF916JZV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF019UOI bigBed narrowPeak optimal idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF784QUI 1265599 ENCODE Processing Pipeline 6cf7e41ba469b9bd794033fad1f1f74e https://www.encodeproject.org/files/ENCFF019UOI/@@download/ENCFF019UOI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF892LCS bigBed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF469POD 13363414 ENCODE Processing Pipeline ca1fea6630cb877c0424bf7baf58c68c https://www.encodeproject.org/files/ENCFF892LCS/@@download/ENCFF892LCS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF612DYZ bigBed narrowPeak conservative idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF118NSY 1077249 ENCODE Processing Pipeline 10e2df904b501f75a9ba4d90358e6716 https://www.encodeproject.org/files/ENCFF612DYZ/@@download/ENCFF612DYZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF784QUI bed narrowPeak optimal idr thresholded peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF443XND, ENCFF469POD, ENCFF625HXV 646103 ENCODE Processing Pipeline 794bec3c8dd3aa58daffb186dd5543ab https://www.encodeproject.org/files/ENCFF784QUI/@@download/ENCFF784QUI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF022LNW fastq reads ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF915HPV 3337139987 Michael Snyder, Stanford a3cc57e8b05fb5c9ce9a1b934bbb68e7 SRA:SRR5111479 https://www.encodeproject.org/files/ENCFF022LNW/@@download/ENCFF022LNW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF896GER fastq reads ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF992BVX 2446397137 Michael Snyder, Stanford 91d6fe486637983b407c72505fda0ab0 SRA:SRR5111480 https://www.encodeproject.org/files/ENCFF896GER/@@download/ENCFF896GER.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF915HPV fastq reads ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF022LNW 3381558502 Michael Snyder, Stanford 317c94db0e1a16c630476cbb0c4b943c SRA:SRR5111479 https://www.encodeproject.org/files/ENCFF915HPV/@@download/ENCFF915HPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF992BVX fastq reads ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF896GER 2489226240 Michael Snyder, Stanford 4a4cd53f09c20aced68ed030a6bdab0f SRA:SRR5111480 https://www.encodeproject.org/files/ENCFF992BVX/@@download/ENCFF992BVX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF888LMO bam unfiltered alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF896GER, ENCFF992BVX 5473950908 ENCODE Processing Pipeline 711fadc010c43ab305a844296dc14d41 https://www.encodeproject.org/files/ENCFF888LMO/@@download/ENCFF888LMO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF431UPK bam unfiltered alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF896GER, ENCFF992BVX 5468704124 ENCODE Processing Pipeline 627430f92f0c505f9909a00c5f2f0017 https://www.encodeproject.org/files/ENCFF431UPK/@@download/ENCFF431UPK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF202DOX bam unfiltered alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022LNW, ENCFF807MUK, ENCFF915HPV 7284622599 ENCODE Processing Pipeline c2737759c3c02d384170563b41f3d87d https://www.encodeproject.org/files/ENCFF202DOX/@@download/ENCFF202DOX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF632SNY bam unfiltered alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022LNW, ENCFF643CGH, ENCFF915HPV 7293018505 ENCODE Processing Pipeline d370d23b073abdbb1cd7ff672040bffb https://www.encodeproject.org/files/ENCFF632SNY/@@download/ENCFF632SNY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF097UUE bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF896GER, ENCFF992BVX 4688893384 ENCODE Processing Pipeline bdaf11e985d01142409e5059d97cd626 https://www.encodeproject.org/files/ENCFF097UUE/@@download/ENCFF097UUE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF651ADF bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF896GER, ENCFF992BVX 4686735249 ENCODE Processing Pipeline 777329afda35007a3314a56d9d6e95cf https://www.encodeproject.org/files/ENCFF651ADF/@@download/ENCFF651ADF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF155GFD bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022LNW, ENCFF643CGH, ENCFF915HPV 6343968688 ENCODE Processing Pipeline f72c63fab784c809093036f9c5476555 https://www.encodeproject.org/files/ENCFF155GFD/@@download/ENCFF155GFD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF466IFZ bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022LNW, ENCFF807MUK, ENCFF915HPV 6340733617 ENCODE Processing Pipeline 679b1c53902ea0cfb17f81cda5c1f577 https://www.encodeproject.org/files/ENCFF466IFZ/@@download/ENCFF466IFZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF449ZHY bigWig signal p-value ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF466IFZ 1556691515 ENCODE Processing Pipeline 8955efbbeeea7a1a4505437799dd1f76 https://www.encodeproject.org/files/ENCFF449ZHY/@@download/ENCFF449ZHY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF376FQL bigWig signal p-value ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF651ADF 1424331081 ENCODE Processing Pipeline 4b248b25bd4022fa49c01d5c865c0959 https://www.encodeproject.org/files/ENCFF376FQL/@@download/ENCFF376FQL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF623TJC bigWig signal p-value ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF466IFZ, ENCFF651ADF 1952677506 ENCODE Processing Pipeline 7606f963628c61ada6ec41a96c92ddb6 https://www.encodeproject.org/files/ENCFF623TJC/@@download/ENCFF623TJC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF754NJQ bigWig fold change over control ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF466IFZ 1656209378 ENCODE Processing Pipeline a53e424c23ef43f85972c4af6e28ef2f https://www.encodeproject.org/files/ENCFF754NJQ/@@download/ENCFF754NJQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF611GCV bigWig fold change over control ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF651ADF 1399856995 ENCODE Processing Pipeline 185714c46652586c905fec85608297cf https://www.encodeproject.org/files/ENCFF611GCV/@@download/ENCFF611GCV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF446MUO bigWig fold change over control ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF466IFZ, ENCFF651ADF 2113076005 ENCODE Processing Pipeline 8f65753315cd46ef926f9239d6260fa4 https://www.encodeproject.org/files/ENCFF446MUO/@@download/ENCFF446MUO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF424FFU bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF466IFZ 6946012 ENCODE Processing Pipeline 0e1307b28822a84c668c0b618cc21bc9 https://www.encodeproject.org/files/ENCFF424FFU/@@download/ENCFF424FFU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF592UUW bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF651ADF 6731725 ENCODE Processing Pipeline 2b84d3283000abbba8587eb750d7fe29 https://www.encodeproject.org/files/ENCFF592UUW/@@download/ENCFF592UUW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF618PSC bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF466IFZ, ENCFF651ADF 7284995 ENCODE Processing Pipeline 5e31a32ee7ec1e68c99466c871b3d4b5 https://www.encodeproject.org/files/ENCFF618PSC/@@download/ENCFF618PSC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF254FGS bigBed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424FFU 11259948 ENCODE Processing Pipeline 9ac336ba89b8512ed20543c5aabebf15 https://www.encodeproject.org/files/ENCFF254FGS/@@download/ENCFF254FGS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF080VPE bigBed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF592UUW 11349557 ENCODE Processing Pipeline 0e767741ec4f4bfb5849f0938547f654 https://www.encodeproject.org/files/ENCFF080VPE/@@download/ENCFF080VPE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF030URU bigBed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF618PSC 13361757 ENCODE Processing Pipeline b2d0add8867177a66c67f42d03b1e3f1 https://www.encodeproject.org/files/ENCFF030URU/@@download/ENCFF030URU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF930WVO bed narrowPeak conservative idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF424FFU, ENCFF592UUW, ENCFF618PSC 124693 ENCODE Processing Pipeline 8ff39c923579f8bc3c3e7571b56e09e7 https://www.encodeproject.org/files/ENCFF930WVO/@@download/ENCFF930WVO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF195VIN bigBed narrowPeak conservative idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF930WVO 274587 ENCODE Processing Pipeline 1b572a3d2ee393262be3cbe02ac4041d https://www.encodeproject.org/files/ENCFF195VIN/@@download/ENCFF195VIN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF483STV bed narrowPeak optimal idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF424FFU, ENCFF592UUW, ENCFF618PSC 168914 ENCODE Processing Pipeline 2e3e79228026bf65cda239b427ab41a8 https://www.encodeproject.org/files/ENCFF483STV/@@download/ENCFF483STV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF423XKL bigBed narrowPeak optimal idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF483STV 340270 ENCODE Processing Pipeline e18cbdbcfc9770ba08c74e9d65f01b94 https://www.encodeproject.org/files/ENCFF423XKL/@@download/ENCFF423XKL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF070EBG bigWig signal p-value ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF155GFD 1572558786 ENCODE Processing Pipeline c2bc6d05a077bc7a422ea007af667e61 https://www.encodeproject.org/files/ENCFF070EBG/@@download/ENCFF070EBG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF313RAI bigWig signal p-value ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF097UUE 1441434083 ENCODE Processing Pipeline a0c1fef81bc55a275ab38271e5b3f599 https://www.encodeproject.org/files/ENCFF313RAI/@@download/ENCFF313RAI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF355UKA bigWig signal p-value ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF097UUE, ENCFF155GFD 1983808655 ENCODE Processing Pipeline e5f1fa15b0f24d6f489a8f8ec65548cb https://www.encodeproject.org/files/ENCFF355UKA/@@download/ENCFF355UKA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF480GAG bigWig fold change over control ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF097UUE 1419065707 ENCODE Processing Pipeline c3973cffbfd0f66b9e98990c396465ba https://www.encodeproject.org/files/ENCFF480GAG/@@download/ENCFF480GAG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF049IXI bigWig fold change over control ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF155GFD 1687810630 ENCODE Processing Pipeline bd099cebd81a52b8871eb5947fbf529a https://www.encodeproject.org/files/ENCFF049IXI/@@download/ENCFF049IXI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF004DAD bigWig fold change over control ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF097UUE, ENCFF155GFD 2148082791 ENCODE Processing Pipeline 076080da475d887973440d83d16e0d2e https://www.encodeproject.org/files/ENCFF004DAD/@@download/ENCFF004DAD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF375NHQ bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF097UUE 6597692 ENCODE Processing Pipeline 0402a0b4230ac6ceb70976ab12ac314c https://www.encodeproject.org/files/ENCFF375NHQ/@@download/ENCFF375NHQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF925IHO bigBed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF378JPU 11266649 ENCODE Processing Pipeline f32e53456cfda5d806d25fb8661c0fa4 https://www.encodeproject.org/files/ENCFF925IHO/@@download/ENCFF925IHO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF221GWK bigBed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF375NHQ 11362406 ENCODE Processing Pipeline 0d36f30a18c8f9c9abda58061c2f6027 https://www.encodeproject.org/files/ENCFF221GWK/@@download/ENCFF221GWK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF612BMV bigBed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF921AMU 13374447 ENCODE Processing Pipeline 26637c041d576edfaf7022298dd2d5af https://www.encodeproject.org/files/ENCFF612BMV/@@download/ENCFF612BMV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF378JPU bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF155GFD 6850508 ENCODE Processing Pipeline f0eb21f0c3ce54b248864a579195d811 https://www.encodeproject.org/files/ENCFF378JPU/@@download/ENCFF378JPU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF758QMX bed narrowPeak conservative idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF375NHQ, ENCFF378JPU, ENCFF419RSJ, ENCFF921AMU 126218 ENCODE Processing Pipeline 2a3bf191d3410bf2f050a85eb2c9056e https://www.encodeproject.org/files/ENCFF758QMX/@@download/ENCFF758QMX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF418YSB bigBed narrowPeak conservative idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF758QMX 277313 ENCODE Processing Pipeline 0c12a73082a45ebd0cfd936b638863db https://www.encodeproject.org/files/ENCFF418YSB/@@download/ENCFF418YSB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF921AMU bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF097UUE, ENCFF155GFD 7258950 ENCODE Processing Pipeline 8ba63e969c76d27980a15e82f53427df https://www.encodeproject.org/files/ENCFF921AMU/@@download/ENCFF921AMU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF553ZMN bigBed narrowPeak optimal idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF280IWS 338179 ENCODE Processing Pipeline a276b2de44b46ff1016314fcb6c855fa https://www.encodeproject.org/files/ENCFF553ZMN/@@download/ENCFF553ZMN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF280IWS bed narrowPeak optimal idr thresholded peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF375NHQ, ENCFF378JPU, ENCFF419RSJ, ENCFF921AMU 166386 ENCODE Processing Pipeline 1d4d4f56873be95d2a68acb196cca490 https://www.encodeproject.org/files/ENCFF280IWS/@@download/ENCFF280IWS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF698KPI fastq reads ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1205005843 Richard Myers, HAIB 324f3f39f868e8dfb687446c7fd87e42 SRA:SRR5339077 https://www.encodeproject.org/files/ENCFF698KPI/@@download/ENCFF698KPI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF088SMS fastq reads ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1211230802 Richard Myers, HAIB 2a8b99fee320f8b41345f3fd7abb7bb6 SRA:SRR5339078 https://www.encodeproject.org/files/ENCFF088SMS/@@download/ENCFF088SMS.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF823FMM bam unfiltered alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF088SMS, ENCFF807MUK 1307527432 ENCODE Processing Pipeline 3e6d108865dd0d08e43ddedbce633834 https://www.encodeproject.org/files/ENCFF823FMM/@@download/ENCFF823FMM.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF805XFC bam unfiltered alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF698KPI, ENCFF807MUK 1275496749 ENCODE Processing Pipeline e3a67e5a9cf22d8d822486e8cc576bae https://www.encodeproject.org/files/ENCFF805XFC/@@download/ENCFF805XFC.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF785RZQ bam unfiltered alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF088SMS, ENCFF643CGH 1309861064 ENCODE Processing Pipeline 373a37ff33025d3f05a0b4fd5717d4f9 https://www.encodeproject.org/files/ENCFF785RZQ/@@download/ENCFF785RZQ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF690HCF bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF698KPI 991625584 ENCODE Processing Pipeline ccf019d90c7c0ab5c31b64797921d223 https://www.encodeproject.org/files/ENCFF690HCF/@@download/ENCFF690HCF.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF459ELG bam unfiltered alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF698KPI 1277483305 ENCODE Processing Pipeline 97cea1477ac88c24c718fc183a5260c6 https://www.encodeproject.org/files/ENCFF459ELG/@@download/ENCFF459ELG.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF601XNO bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF088SMS, ENCFF643CGH 1024706840 ENCODE Processing Pipeline 47a09db54021c9c932b89fab8e73ba50 https://www.encodeproject.org/files/ENCFF601XNO/@@download/ENCFF601XNO.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683LTQ bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF088SMS, ENCFF807MUK 1024351817 ENCODE Processing Pipeline 80d11edba0ecfc6535cfd1bf843328ce https://www.encodeproject.org/files/ENCFF683LTQ/@@download/ENCFF683LTQ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF195PDT bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF698KPI, ENCFF807MUK 991369735 ENCODE Processing Pipeline 865b23ed8c9a5ca4e4e9e50d384a7c90 https://www.encodeproject.org/files/ENCFF195PDT/@@download/ENCFF195PDT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF282LIB bigWig signal p-value ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF690HCF 454612544 ENCODE Processing Pipeline 1526bb9c805b3f7bf5c0150a37b199a9 https://www.encodeproject.org/files/ENCFF282LIB/@@download/ENCFF282LIB.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF535PME bigWig signal p-value ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF601XNO 434932878 ENCODE Processing Pipeline c17d3b6ca9d86f26e8911f2e9d4a87d9 https://www.encodeproject.org/files/ENCFF535PME/@@download/ENCFF535PME.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF608IDA bigWig signal p-value ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF601XNO, ENCFF690HCF 642644154 ENCODE Processing Pipeline 0189645898a6a2f26257b3053d8cd63a https://www.encodeproject.org/files/ENCFF608IDA/@@download/ENCFF608IDA.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF689CUH bigWig fold change over control ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF601XNO 406979169 ENCODE Processing Pipeline a2742dcccd3fdf3a3984d526eda7c2fe https://www.encodeproject.org/files/ENCFF689CUH/@@download/ENCFF689CUH.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF398YUW bigWig fold change over control ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF690HCF 387927493 ENCODE Processing Pipeline 6ec97d793491d0310e8cb168b4aa5848 https://www.encodeproject.org/files/ENCFF398YUW/@@download/ENCFF398YUW.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF628RAB bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF690HCF 6476478 ENCODE Processing Pipeline 85dbe0f75d751c2be4e6d9d0adf37d4c https://www.encodeproject.org/files/ENCFF628RAB/@@download/ENCFF628RAB.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321MUC bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF601XNO 6082547 ENCODE Processing Pipeline 7254021d96de54064059feef93d97def https://www.encodeproject.org/files/ENCFF321MUC/@@download/ENCFF321MUC.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF870PDE bigWig fold change over control ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF601XNO, ENCFF690HCF 666387773 ENCODE Processing Pipeline 38edd095b60ac53eef8b1bb1cbdd0c77 https://www.encodeproject.org/files/ENCFF870PDE/@@download/ENCFF870PDE.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF750YCY bigBed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF628RAB 12801300 ENCODE Processing Pipeline 59cba8a9b88593285a8ac39e67c07940 https://www.encodeproject.org/files/ENCFF750YCY/@@download/ENCFF750YCY.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF524KBX bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF601XNO, ENCFF690HCF 6890575 ENCODE Processing Pipeline 23c71dc1328c2d6cac780c5e209cd860 https://www.encodeproject.org/files/ENCFF524KBX/@@download/ENCFF524KBX.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683EPB bigBed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF321MUC 12926547 ENCODE Processing Pipeline f783e593f4c66f2d2916faabd9006266 https://www.encodeproject.org/files/ENCFF683EPB/@@download/ENCFF683EPB.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF263AUE bed narrowPeak conservative idr thresholded peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF321MUC, ENCFF419RSJ, ENCFF524KBX, ENCFF628RAB 199872 ENCODE Processing Pipeline cdd43f77bee620e96cf1da10a59465aa https://www.encodeproject.org/files/ENCFF263AUE/@@download/ENCFF263AUE.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF780LVD bigBed narrowPeak optimal idr thresholded peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF159FGZ 455064 ENCODE Processing Pipeline b503709cbb0061d8c5435af9ecbb7dbc https://www.encodeproject.org/files/ENCFF780LVD/@@download/ENCFF780LVD.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF876BXU bigBed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF524KBX 12728657 ENCODE Processing Pipeline 3174af17bbba7fb20c99e268958b1ff2 https://www.encodeproject.org/files/ENCFF876BXU/@@download/ENCFF876BXU.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF159FGZ bed narrowPeak optimal idr thresholded peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF321MUC, ENCFF419RSJ, ENCFF524KBX, ENCFF628RAB 211814 ENCODE Processing Pipeline f5da2389c0548ee99cef65d38468c56a https://www.encodeproject.org/files/ENCFF159FGZ/@@download/ENCFF159FGZ.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF570SAF bigBed narrowPeak conservative idr thresholded peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF263AUE 434416 ENCODE Processing Pipeline b853d2bb97000e722e7cb469ebaac4cf https://www.encodeproject.org/files/ENCFF570SAF/@@download/ENCFF570SAF.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF470IVC bigWig signal p-value ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF195PDT, ENCFF203ABR 1074541616 ENCODE Processing Pipeline 36437a2e9313b225fb7893d7281d5bd8 https://www.encodeproject.org/files/ENCFF470IVC/@@download/ENCFF470IVC.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178JXQ bigWig signal p-value ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF683LTQ 1276053842 ENCODE Processing Pipeline 4778a9faebfde386e47457dc841872b8 https://www.encodeproject.org/files/ENCFF178JXQ/@@download/ENCFF178JXQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463BFH bigWig signal p-value ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF195PDT, ENCFF203ABR, ENCFF683LTQ 1247101323 ENCODE Processing Pipeline edc663e3b9c44d69e62691c2dab22beb https://www.encodeproject.org/files/ENCFF463BFH/@@download/ENCFF463BFH.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF012WEB bigWig fold change over control ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF195PDT, ENCFF203ABR 798571276 ENCODE Processing Pipeline 12fd75ff119c1ae81d514852a2da347c https://www.encodeproject.org/files/ENCFF012WEB/@@download/ENCFF012WEB.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003RQQ bigWig fold change over control ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF683LTQ 814742952 ENCODE Processing Pipeline 550fba233f20d238964c31567871ec90 https://www.encodeproject.org/files/ENCFF003RQQ/@@download/ENCFF003RQQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF731PDO bigWig fold change over control ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF195PDT, ENCFF203ABR, ENCFF683LTQ 1200390813 ENCODE Processing Pipeline beb4afec1b990a4e92555c912327dda1 https://www.encodeproject.org/files/ENCFF731PDO/@@download/ENCFF731PDO.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF366NSR bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF195PDT, ENCFF203ABR 6959474 ENCODE Processing Pipeline 911257a38ceea9aafd1e0ebc01945d69 https://www.encodeproject.org/files/ENCFF366NSR/@@download/ENCFF366NSR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF129XQZ bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF683LTQ 6796320 ENCODE Processing Pipeline 8415f37ef135ea912bbd84f5e473f873 https://www.encodeproject.org/files/ENCFF129XQZ/@@download/ENCFF129XQZ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF564FVF bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF195PDT, ENCFF203ABR, ENCFF683LTQ 7171643 ENCODE Processing Pipeline cb09920d3e3a639ea21072fefd62902c https://www.encodeproject.org/files/ENCFF564FVF/@@download/ENCFF564FVF.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530IVU bigBed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF129XQZ 12867237 ENCODE Processing Pipeline 2798364823411c7705ab9044fa2897e7 https://www.encodeproject.org/files/ENCFF530IVU/@@download/ENCFF530IVU.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF888DRP bigBed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF366NSR 12632229 ENCODE Processing Pipeline 85060cfced3aa42e4e2e3d5a34507e41 https://www.encodeproject.org/files/ENCFF888DRP/@@download/ENCFF888DRP.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF187AVG bigBed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF564FVF 12613712 ENCODE Processing Pipeline 816f28639f3b973d435c183ba40096b6 https://www.encodeproject.org/files/ENCFF187AVG/@@download/ENCFF187AVG.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF688WNG bed narrowPeak optimal idr thresholded peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF129XQZ, ENCFF366NSR, ENCFF564FVF 184995 ENCODE Processing Pipeline a3d70f04c40181c826c86973537a78f2 https://www.encodeproject.org/files/ENCFF688WNG/@@download/ENCFF688WNG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927VDP bigBed narrowPeak optimal idr thresholded peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF688WNG 418980 ENCODE Processing Pipeline 5bc88e9fc6db6e15a2c1a538e798f915 https://www.encodeproject.org/files/ENCFF927VDP/@@download/ENCFF927VDP.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF948EIJ fastq reads ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 1 76 single-ended 1927608090 Bradley Bernstein, Broad c8cf11200bb0b3b258a37ac7402365d0 https://www.encodeproject.org/files/ENCFF948EIJ/@@download/ENCFF948EIJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF799DYS bam unfiltered alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF807MUK, ENCFF948EIJ 2229821858 ENCODE Processing Pipeline 7dd0eff97e511856c33a268e61cb1f6b https://www.encodeproject.org/files/ENCFF799DYS/@@download/ENCFF799DYS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF858ORH bam unfiltered alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF643CGH, ENCFF948EIJ 2233495708 ENCODE Processing Pipeline d0f85fb0990f50e67fdefcc076b54c00 https://www.encodeproject.org/files/ENCFF858ORH/@@download/ENCFF858ORH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF468GSD bam alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF807MUK, ENCFF948EIJ 1753601314 ENCODE Processing Pipeline 4ebf07e71ed25120bb9e1d41cc7c1cc1 https://www.encodeproject.org/files/ENCFF468GSD/@@download/ENCFF468GSD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF651ATB bam alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF643CGH, ENCFF948EIJ 1758762883 ENCODE Processing Pipeline cce7f36a63f001c2d385b0f4a5e518af https://www.encodeproject.org/files/ENCFF651ATB/@@download/ENCFF651ATB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF119POK bigBed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF982ZRX 11435229 ENCODE Processing Pipeline ab972239b5852093a2f7f03d0f2d9332 https://www.encodeproject.org/files/ENCFF119POK/@@download/ENCFF119POK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF539FGB bigWig signal p-value ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 887856226 ENCODE Processing Pipeline 99a374a6d44b3825f3c1c6dfb9654acf https://www.encodeproject.org/files/ENCFF539FGB/@@download/ENCFF539FGB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF912GHA bigWig fold change over control ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF142VHH, ENCFF651ATB 883700918 ENCODE Processing Pipeline 30beedb1778987fe20557424e80e1cbf https://www.encodeproject.org/files/ENCFF912GHA/@@download/ENCFF912GHA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF676MWM bigWig signal p-value ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF142VHH, ENCFF651ATB 850022620 ENCODE Processing Pipeline cca56ce00d19a247a9ce8a1e4338d160 https://www.encodeproject.org/files/ENCFF676MWM/@@download/ENCFF676MWM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF093MSD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF746JPU 238212 ENCODE Processing Pipeline 6e66fe87115c63e33a56e54a4110b906 https://www.encodeproject.org/files/ENCFF093MSD/@@download/ENCFF093MSD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF071OMY bigBed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF123UGV 11466615 ENCODE Processing Pipeline 2e9a8755e8e91cbfcba4f41aa8bf2881 https://www.encodeproject.org/files/ENCFF071OMY/@@download/ENCFF071OMY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF982ZRX bed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 5550435 ENCODE Processing Pipeline 5daee905a3ddafa7c63f59aef3bca91a https://www.encodeproject.org/files/ENCFF982ZRX/@@download/ENCFF982ZRX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF123UGV bed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF142VHH, ENCFF651ATB 5464231 ENCODE Processing Pipeline f080b7691af05cd0538a033843d55183 https://www.encodeproject.org/files/ENCFF123UGV/@@download/ENCFF123UGV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF758DPC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF547FUI 243250 ENCODE Processing Pipeline 1e9a8687420845b9f393d18b4e0d8a15 https://www.encodeproject.org/files/ENCFF758DPC/@@download/ENCFF758DPC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF876VVJ bigWig fold change over control ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 882998892 ENCODE Processing Pipeline ff0bf9cf19e35b1e4b21d6bf34dfc139 https://www.encodeproject.org/files/ENCFF876VVJ/@@download/ENCFF876VVJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF746JPU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF001TDO, ENCFF982ZRX 68585 ENCODE Processing Pipeline 1919632ad042fa2526b47ad77f1dc405 https://www.encodeproject.org/files/ENCFF746JPU/@@download/ENCFF746JPU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF547FUI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF123UGV, ENCFF419RSJ 72641 ENCODE Processing Pipeline 2ad0739f5f523819a95f18d513f8877d https://www.encodeproject.org/files/ENCFF547FUI/@@download/ENCFF547FUI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF707EOL bam unfiltered alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF035FBQ, ENCFF761HWG, ENCFF807MUK 5576362792 ENCODE Processing Pipeline d29f3d9a742fa808bff844b5f668e908 https://www.encodeproject.org/files/ENCFF707EOL/@@download/ENCFF707EOL.bam hg19 released borderline replicate concordance ENCFF170SMP bam unfiltered alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF087IYL, ENCFF467WHQ, ENCFF807MUK 5359071826 ENCODE Processing Pipeline 7aebea3536c9f00c7cca46af57d1f9de https://www.encodeproject.org/files/ENCFF170SMP/@@download/ENCFF170SMP.bam hg19 released borderline replicate concordance ENCFF467WHQ fastq reads ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF087IYL 2374800127 Michael Snyder, Stanford d286cbf61d1a533cecade749926ced73 SRA:SRR5111369 https://www.encodeproject.org/files/ENCFF467WHQ/@@download/ENCFF467WHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance ENCFF087IYL fastq reads ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF467WHQ 2408055019 Michael Snyder, Stanford 43469d32d308e9063ec8ca1937632777 SRA:SRR5111369 https://www.encodeproject.org/files/ENCFF087IYL/@@download/ENCFF087IYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance ENCFF035FBQ fastq reads ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF761HWG 2506650763 Michael Snyder, Stanford ff3de19c42d919a68848588e9d9dd748 SRA:SRR5111370 https://www.encodeproject.org/files/ENCFF035FBQ/@@download/ENCFF035FBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance ENCFF761HWG fastq reads ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF035FBQ 2469763914 Michael Snyder, Stanford fa4afd4a37204e504806c9ed7457ac5e SRA:SRR5111370 https://www.encodeproject.org/files/ENCFF761HWG/@@download/ENCFF761HWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance ENCFF303UMK bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF035FBQ, ENCFF761HWG, ENCFF807MUK 4719497401 ENCODE Processing Pipeline 79a319d4693e7c059ba18e5b1d881b37 https://www.encodeproject.org/files/ENCFF303UMK/@@download/ENCFF303UMK.bam hg19 released borderline replicate concordance ENCFF486FNI bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF087IYL, ENCFF467WHQ, ENCFF807MUK 4563001819 ENCODE Processing Pipeline 9f06e22698778ca871a1bc8210278d43 https://www.encodeproject.org/files/ENCFF486FNI/@@download/ENCFF486FNI.bam hg19 released borderline replicate concordance ENCFF364HOZ bigWig signal p-value ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF449NNE, ENCFF486FNI 983418668 ENCODE Processing Pipeline c1f124d181348eaf5451d33a8d647a13 https://www.encodeproject.org/files/ENCFF364HOZ/@@download/ENCFF364HOZ.bigWig hg19 released borderline replicate concordance ENCFF665LVN bigWig signal p-value ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF303UMK, ENCFF449NNE, ENCFF486FNI, ENCFF999EQI 1627133081 ENCODE Processing Pipeline 9794979e660bfdc476b9ed074aa13dc5 https://www.encodeproject.org/files/ENCFF665LVN/@@download/ENCFF665LVN.bigWig hg19 released borderline replicate concordance ENCFF553GYL bigWig fold change over control ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF303UMK, ENCFF999EQI 1146344495 ENCODE Processing Pipeline ef36ba52fc0e6f1116efead491d65ab7 https://www.encodeproject.org/files/ENCFF553GYL/@@download/ENCFF553GYL.bigWig hg19 released borderline replicate concordance ENCFF294QDR bigWig signal p-value ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF303UMK, ENCFF999EQI 966021859 ENCODE Processing Pipeline c90c8ebf873555caa6175cf21492a03a https://www.encodeproject.org/files/ENCFF294QDR/@@download/ENCFF294QDR.bigWig hg19 released borderline replicate concordance ENCFF916ARR bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF303UMK, ENCFF999EQI 6109059 ENCODE Processing Pipeline 6ffc12ddb7cfa214844744dceb9a59c0 https://www.encodeproject.org/files/ENCFF916ARR/@@download/ENCFF916ARR.bed.gz hg19 released borderline replicate concordance ENCFF284DOX bigWig fold change over control ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF303UMK, ENCFF449NNE, ENCFF486FNI, ENCFF999EQI 2129460832 ENCODE Processing Pipeline 7a9f2ea69439bc3988917a7b856b56e2 https://www.encodeproject.org/files/ENCFF284DOX/@@download/ENCFF284DOX.bigWig hg19 released borderline replicate concordance ENCFF694CYJ bigWig fold change over control ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF449NNE, ENCFF486FNI 1222899073 ENCODE Processing Pipeline 1dc4172233f987b4e26d9b78bdfd045a https://www.encodeproject.org/files/ENCFF694CYJ/@@download/ENCFF694CYJ.bigWig hg19 released borderline replicate concordance ENCFF988PGH bigBed narrowPeak conservative idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF157FKT 81656 ENCODE Processing Pipeline 2d71dd5979ecd71313339691dcbc1102 https://www.encodeproject.org/files/ENCFF988PGH/@@download/ENCFF988PGH.bigBed hg19 released borderline replicate concordance ENCFF835OWQ bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF303UMK, ENCFF449NNE, ENCFF486FNI, ENCFF999EQI 7061263 ENCODE Processing Pipeline 227cf7a0487ec4ec37724f107abef27d https://www.encodeproject.org/files/ENCFF835OWQ/@@download/ENCFF835OWQ.bed.gz hg19 released borderline replicate concordance ENCFF100USD bigBed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF916ARR 11264721 ENCODE Processing Pipeline 2a69f995f3cf8fb4f198d2bd534567d6 https://www.encodeproject.org/files/ENCFF100USD/@@download/ENCFF100USD.bigBed hg19 released borderline replicate concordance ENCFF763ZEF bigBed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF727PSQ 11316558 ENCODE Processing Pipeline 3dcdc46ccedaeff1ac8ccc5cfe58a30d https://www.encodeproject.org/files/ENCFF763ZEF/@@download/ENCFF763ZEF.bigBed hg19 released borderline replicate concordance ENCFF157FKT bed narrowPeak conservative idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF727PSQ, ENCFF835OWQ, ENCFF916ARR 19450 ENCODE Processing Pipeline bff26e475ea885f04ae02844a972c10a https://www.encodeproject.org/files/ENCFF157FKT/@@download/ENCFF157FKT.bed.gz hg19 released borderline replicate concordance ENCFF727PSQ bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF449NNE, ENCFF486FNI 6123997 ENCODE Processing Pipeline 5c8a819ec0816afec60033107aae642a https://www.encodeproject.org/files/ENCFF727PSQ/@@download/ENCFF727PSQ.bed.gz hg19 released borderline replicate concordance ENCFF765RCQ bigBed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF835OWQ 11283074 ENCODE Processing Pipeline aeb89682b57980732c04238d09e1b5a4 https://www.encodeproject.org/files/ENCFF765RCQ/@@download/ENCFF765RCQ.bigBed hg19 released borderline replicate concordance ENCFF880SXP bed narrowPeak optimal idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF727PSQ, ENCFF835OWQ, ENCFF916ARR 47660 ENCODE Processing Pipeline 5b7572ab56cf4c0cce401f0880eb3529 https://www.encodeproject.org/files/ENCFF880SXP/@@download/ENCFF880SXP.bed.gz hg19 released borderline replicate concordance ENCFF949VFI bigBed narrowPeak optimal idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF880SXP 146760 ENCODE Processing Pipeline a3941d19892b00efea8fe8bfe1e74372 https://www.encodeproject.org/files/ENCFF949VFI/@@download/ENCFF949VFI.bigBed hg19 released borderline replicate concordance ENCFF912PQA bam unfiltered alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF087IYL, ENCFF467WHQ, ENCFF643CGH 5370528631 ENCODE Processing Pipeline 4a07aca6c9398bf10436b03990c8ad15 https://www.encodeproject.org/files/ENCFF912PQA/@@download/ENCFF912PQA.bam GRCh38 released borderline replicate concordance ENCFF208KNM bam unfiltered alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF035FBQ, ENCFF643CGH, ENCFF761HWG 5589102556 ENCODE Processing Pipeline b9edd8a8026578cb26118f3ac45b9f79 https://www.encodeproject.org/files/ENCFF208KNM/@@download/ENCFF208KNM.bam GRCh38 released borderline replicate concordance ENCFF143LAN bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF087IYL, ENCFF467WHQ, ENCFF643CGH 4576409681 ENCODE Processing Pipeline 646ca77f52ca610b862130397d38ebcd https://www.encodeproject.org/files/ENCFF143LAN/@@download/ENCFF143LAN.bam GRCh38 released borderline replicate concordance ENCFF379UJI bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF035FBQ, ENCFF643CGH, ENCFF761HWG 4735934516 ENCODE Processing Pipeline d5ed65c7a618ce69edb47544c52d1443 https://www.encodeproject.org/files/ENCFF379UJI/@@download/ENCFF379UJI.bam GRCh38 released borderline replicate concordance ENCFF918RJK bigWig signal p-value ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF143LAN, ENCFF190EPQ 1250230059 ENCODE Processing Pipeline a11c4c4cb9ba6a5e95f09bdfff88b53c https://www.encodeproject.org/files/ENCFF918RJK/@@download/ENCFF918RJK.bigWig GRCh38 released borderline replicate concordance ENCFF994KOB bigWig signal p-value ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF379UJI, ENCFF950AXC 1171509645 ENCODE Processing Pipeline 06b989f0834c446dafdeee6682f95fad https://www.encodeproject.org/files/ENCFF994KOB/@@download/ENCFF994KOB.bigWig GRCh38 released borderline replicate concordance ENCFF342XBJ bigWig signal p-value ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF143LAN, ENCFF190EPQ, ENCFF379UJI, ENCFF950AXC 1648433374 ENCODE Processing Pipeline 85ba9d158d2ecbb7e1c44b7112b28222 https://www.encodeproject.org/files/ENCFF342XBJ/@@download/ENCFF342XBJ.bigWig GRCh38 released borderline replicate concordance ENCFF820CXU bigWig fold change over control ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF143LAN, ENCFF190EPQ 1236370570 ENCODE Processing Pipeline 2428aa261ff7a8ce0e859192ef74ac09 https://www.encodeproject.org/files/ENCFF820CXU/@@download/ENCFF820CXU.bigWig GRCh38 released borderline replicate concordance ENCFF927DYC bigWig fold change over control ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF379UJI, ENCFF950AXC 1109719453 ENCODE Processing Pipeline 608b23b527b36e330a33b3f82768e403 https://www.encodeproject.org/files/ENCFF927DYC/@@download/ENCFF927DYC.bigWig GRCh38 released borderline replicate concordance ENCFF788XJB bigWig fold change over control ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF143LAN, ENCFF190EPQ, ENCFF379UJI, ENCFF950AXC 2123685196 ENCODE Processing Pipeline 2a21902f12c342c2ba5855c42ecba05a https://www.encodeproject.org/files/ENCFF788XJB/@@download/ENCFF788XJB.bigWig GRCh38 released borderline replicate concordance ENCFF779ROV bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF143LAN, ENCFF190EPQ 5960457 ENCODE Processing Pipeline 4ca6b49cb9713ac1db1c2f211e53658e https://www.encodeproject.org/files/ENCFF779ROV/@@download/ENCFF779ROV.bed.gz GRCh38 released borderline replicate concordance ENCFF258CRO bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF143LAN, ENCFF190EPQ, ENCFF379UJI, ENCFF950AXC 7019155 ENCODE Processing Pipeline 416a2eee19c9fc2aafa6d05e4e03e379 https://www.encodeproject.org/files/ENCFF258CRO/@@download/ENCFF258CRO.bed.gz GRCh38 released borderline replicate concordance ENCFF869XVK bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF379UJI, ENCFF950AXC 5963753 ENCODE Processing Pipeline 626fb1fb855f97371a670b6287584085 https://www.encodeproject.org/files/ENCFF869XVK/@@download/ENCFF869XVK.bed.gz GRCh38 released borderline replicate concordance ENCFF518DCQ bigBed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF869XVK 11263780 ENCODE Processing Pipeline 5fda77f5776f9db80af3bf7225357b14 https://www.encodeproject.org/files/ENCFF518DCQ/@@download/ENCFF518DCQ.bigBed GRCh38 released borderline replicate concordance ENCFF091GBG bigBed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF779ROV 11323986 ENCODE Processing Pipeline d2333476d672e927a2f612a84687243e https://www.encodeproject.org/files/ENCFF091GBG/@@download/ENCFF091GBG.bigBed GRCh38 released borderline replicate concordance ENCFF038OTQ bigBed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF258CRO 11304563 ENCODE Processing Pipeline a7349dc6805a63f52f017376e9237565 https://www.encodeproject.org/files/ENCFF038OTQ/@@download/ENCFF038OTQ.bigBed GRCh38 released borderline replicate concordance ENCFF644CXU bigBed narrowPeak conservative idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF632RQY 104961 ENCODE Processing Pipeline 0397042e2a2719d657e3af04c767277f https://www.encodeproject.org/files/ENCFF644CXU/@@download/ENCFF644CXU.bigBed GRCh38 released borderline replicate concordance ENCFF969BZA bed narrowPeak optimal idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF258CRO, ENCFF419RSJ, ENCFF779ROV, ENCFF869XVK 54227 ENCODE Processing Pipeline b654f3e0682bccf4f54a5752be941aca https://www.encodeproject.org/files/ENCFF969BZA/@@download/ENCFF969BZA.bed.gz GRCh38 released borderline replicate concordance ENCFF632RQY bed narrowPeak conservative idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF258CRO, ENCFF419RSJ, ENCFF779ROV, ENCFF869XVK 23562 ENCODE Processing Pipeline 9c950fa71b220df9cd599f90e1a5d981 https://www.encodeproject.org/files/ENCFF632RQY/@@download/ENCFF632RQY.bed.gz GRCh38 released borderline replicate concordance ENCFF391LAG bigBed narrowPeak optimal idr thresholded peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF969BZA 161005 ENCODE Processing Pipeline 543a0518a2139d44abdd54f09012d7b8 https://www.encodeproject.org/files/ENCFF391LAG/@@download/ENCFF391LAG.bigBed GRCh38 released borderline replicate concordance ENCFF000PEL bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PEV 1153196964 Richard Myers, HAIB 18df715245bd77416dad7a1ec8effbcd https://www.encodeproject.org/files/ENCFF000PEL/@@download/ENCFF000PEL.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PEN bigBed broadPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFA 1241832 Richard Myers, HAIB aedc7bb08bebb6bb96d19b5d613f4819 https://www.encodeproject.org/files/ENCFF000PEN/@@download/ENCFF000PEN.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PEO bigBed broadPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFB 1681855 Richard Myers, HAIB 8f7cd2eddfa8a64e5a70bbff4f7e4fc2 https://www.encodeproject.org/files/ENCFF000PEO/@@download/ENCFF000PEO.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PEP bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PFC 1284791515 Richard Myers, HAIB 67f7179bc6f4511a6c01572ff41e15b3 https://www.encodeproject.org/files/ENCFF000PEP/@@download/ENCFF000PEP.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PER bigWig raw signal ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 52537405 Richard Myers, HAIB e2967dcf8db0dede5df275d4b0a92180 https://www.encodeproject.org/files/ENCFF000PER/@@download/ENCFF000PER.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PES bigWig raw signal ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 89321027 Richard Myers, HAIB 74534d13460f06ba90d3a3459d3e8206 https://www.encodeproject.org/files/ENCFF000PES/@@download/ENCFF000PES.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PEV fastq reads ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1611652158 Richard Myers, HAIB 1a24ba704d4fc91deb7b293ad0033f6b https://www.encodeproject.org/files/ENCFF000PEV/@@download/ENCFF000PEV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, low read depth biological replicates with identical biosample ENCFF000PFC fastq reads ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1974985606 Richard Myers, HAIB 1f1430164e94b694c0e73e3c75c17f40 https://www.encodeproject.org/files/ENCFF000PFC/@@download/ENCFF000PFC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, low read depth biological replicates with identical biosample ENCFF001UFA bed broadPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 596743 Richard Myers, HAIB c92bc86c9ef297a7c22e36b40fbbc1c5 https://www.encodeproject.org/files/ENCFF001UFA/@@download/ENCFF001UFA.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UFB bed broadPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 842109 Richard Myers, HAIB 9007f2859f06f0e7c4f1a2367d17b534 https://www.encodeproject.org/files/ENCFF001UFB/@@download/ENCFF001UFB.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJZ bed narrowPeak optimal idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 540314 ENCODE Consortium Analysis Working Group b6c82f6bd9f4c1331f8fbf50a9fae549 https://www.encodeproject.org/files/ENCFF002CJZ/@@download/ENCFF002CJZ.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF573RQE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJZ 1484023 ENCODE Consortium 137bc9c878202f8a3bca0226ca6a2b06 https://www.encodeproject.org/files/ENCFF573RQE/@@download/ENCFF573RQE.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF178WZP bam unfiltered alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEV, ENCFF643CGH 1913323412 ENCODE Processing Pipeline 48d998e114a2366fa41bce67b491f228 https://www.encodeproject.org/files/ENCFF178WZP/@@download/ENCFF178WZP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF869FPY bam unfiltered alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFC, ENCFF643CGH 2270845934 ENCODE Processing Pipeline 45903ff6b77b896bc86b6d55194c429e https://www.encodeproject.org/files/ENCFF869FPY/@@download/ENCFF869FPY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF436YTR bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEV, ENCFF643CGH 810431504 ENCODE Processing Pipeline c02ffc7e00d5852a7bdb6c29bb266370 https://www.encodeproject.org/files/ENCFF436YTR/@@download/ENCFF436YTR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF141DVZ bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFC, ENCFF643CGH 867946707 ENCODE Processing Pipeline 821afb98ff8237a5131db631c8b5ff01 https://www.encodeproject.org/files/ENCFF141DVZ/@@download/ENCFF141DVZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF742BAZ bam unfiltered alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEV, ENCFF807MUK 1910063634 ENCODE Processing Pipeline b03734e7e1e0c58689cdfc79fd1e96e8 https://www.encodeproject.org/files/ENCFF742BAZ/@@download/ENCFF742BAZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF452GJT bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEV, ENCFF807MUK 810983984 ENCODE Processing Pipeline 692d2b6bdf16f4491f5efec6888929fb https://www.encodeproject.org/files/ENCFF452GJT/@@download/ENCFF452GJT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF800ZGL bam unfiltered alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFC, ENCFF807MUK 2268208212 ENCODE Processing Pipeline 3de37fd7c0b3562e0dad60eacf882532 https://www.encodeproject.org/files/ENCFF800ZGL/@@download/ENCFF800ZGL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF713XOH bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFC, ENCFF807MUK 868558871 ENCODE Processing Pipeline c45086b93402ebb84c21c715f57e3669 https://www.encodeproject.org/files/ENCFF713XOH/@@download/ENCFF713XOH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF723OFE bigWig signal p-value ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF436YTR 392213885 ENCODE Processing Pipeline 6234adee2fe02b7ca2a889fb8ae9ceee https://www.encodeproject.org/files/ENCFF723OFE/@@download/ENCFF723OFE.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF926QMN bigWig signal p-value ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141DVZ, ENCFF202PGY 450083271 ENCODE Processing Pipeline 61f6b57c4df02f151cf3bc9f2e568222 https://www.encodeproject.org/files/ENCFF926QMN/@@download/ENCFF926QMN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF251KNS bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF141DVZ, ENCFF202PGY, ENCFF436YTR 6914708 ENCODE Processing Pipeline 134fc2d94ffd6ffdb1260a6c5902dd14 https://www.encodeproject.org/files/ENCFF251KNS/@@download/ENCFF251KNS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF246QVY bed narrowPeak optimal idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF098VGF, ENCFF137AHY, ENCFF251KNS, ENCFF419RSJ 660195 ENCODE Processing Pipeline 60c2b35b96e4bb623a68c317359893e9 https://www.encodeproject.org/files/ENCFF246QVY/@@download/ENCFF246QVY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF812PHN bigWig signal p-value ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF141DVZ, ENCFF202PGY, ENCFF436YTR 510265378 ENCODE Processing Pipeline d98ca546120248592b19bbddcb6da78f https://www.encodeproject.org/files/ENCFF812PHN/@@download/ENCFF812PHN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF841KFL bigBed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF137AHY 11896443 ENCODE Processing Pipeline ab854e509af9ea79e805fa01a7820c06 https://www.encodeproject.org/files/ENCFF841KFL/@@download/ENCFF841KFL.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF636PWI bed narrowPeak conservative idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF098VGF, ENCFF137AHY, ENCFF251KNS, ENCFF419RSJ 593449 ENCODE Processing Pipeline 11bc427ee22065fcb596ec371addb205 https://www.encodeproject.org/files/ENCFF636PWI/@@download/ENCFF636PWI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF309DHX bigWig fold change over control ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF436YTR 314498787 ENCODE Processing Pipeline ed755a6582b178bd8e3fb205477609dc https://www.encodeproject.org/files/ENCFF309DHX/@@download/ENCFF309DHX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF285WUX bigWig fold change over control ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141DVZ, ENCFF202PGY 288995354 ENCODE Processing Pipeline 911e7d7069f38cae22ac493cecdb40e0 https://www.encodeproject.org/files/ENCFF285WUX/@@download/ENCFF285WUX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF144IVU bigWig fold change over control ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF141DVZ, ENCFF202PGY, ENCFF436YTR 513662390 ENCODE Processing Pipeline a02a846f452ace89709b827a6d891d34 https://www.encodeproject.org/files/ENCFF144IVU/@@download/ENCFF144IVU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF098VGF bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF436YTR 6335185 ENCODE Processing Pipeline bb7a14498c3bc435902d04615ac8560e https://www.encodeproject.org/files/ENCFF098VGF/@@download/ENCFF098VGF.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF137AHY bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141DVZ, ENCFF202PGY 6421630 ENCODE Processing Pipeline f77a23f1d7d582a195f7edee10f341b9 https://www.encodeproject.org/files/ENCFF137AHY/@@download/ENCFF137AHY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF309ZKY bigBed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF098VGF 12066573 ENCODE Processing Pipeline 4651892e3786f053c0833cda335f6595 https://www.encodeproject.org/files/ENCFF309ZKY/@@download/ENCFF309ZKY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF131USR bigBed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF251KNS 11976969 ENCODE Processing Pipeline f3b1dfbb2351d3c639f86fabdcd20875 https://www.encodeproject.org/files/ENCFF131USR/@@download/ENCFF131USR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF888SJW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF636PWI 1272825 ENCODE Processing Pipeline 01216a4297464e832e5735ad54ff81f9 https://www.encodeproject.org/files/ENCFF888SJW/@@download/ENCFF888SJW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF017MYM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF246QVY 1387845 ENCODE Processing Pipeline d9a76e94b911611819d7c1de81a2d1cb https://www.encodeproject.org/files/ENCFF017MYM/@@download/ENCFF017MYM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF016XGN bigWig fold change over control ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF452GJT 312755489 ENCODE Processing Pipeline 1934c327347445bd8406aab37c16d04c https://www.encodeproject.org/files/ENCFF016XGN/@@download/ENCFF016XGN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF374EGI bigWig signal p-value ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF713XOH 458761473 ENCODE Processing Pipeline f1ca6a5cdd4aa839d64c7d1caefef609 https://www.encodeproject.org/files/ENCFF374EGI/@@download/ENCFF374EGI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF606SEK bigWig signal p-value ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF452GJT, ENCFF713XOH 512240055 ENCODE Processing Pipeline 555d3b7a857ce1651ea2a7f90a8332d4 https://www.encodeproject.org/files/ENCFF606SEK/@@download/ENCFF606SEK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF020STC bigWig fold change over control ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF713XOH 288495502 ENCODE Processing Pipeline 7ee3e58d1a2ea063d676a6f5f3c0c974 https://www.encodeproject.org/files/ENCFF020STC/@@download/ENCFF020STC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF959MZN bigWig fold change over control ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF452GJT, ENCFF713XOH 507126494 ENCODE Processing Pipeline 1b988796d6b1c84581850fbae34e1aa7 https://www.encodeproject.org/files/ENCFF959MZN/@@download/ENCFF959MZN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF193MSK bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF713XOH 6563800 ENCODE Processing Pipeline 7d95b8c9e2794e78e81e6e4a4954270c https://www.encodeproject.org/files/ENCFF193MSK/@@download/ENCFF193MSK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF874QGO bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF452GJT, ENCFF713XOH 7036626 ENCODE Processing Pipeline 1fe149b6a2f0e3b3ae9c0d6631bd2bb8 https://www.encodeproject.org/files/ENCFF874QGO/@@download/ENCFF874QGO.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF835EUG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF338FAD 1297181 ENCODE Processing Pipeline 59344468875ba7dceb95e5c083aa4cfa https://www.encodeproject.org/files/ENCFF835EUG/@@download/ENCFF835EUG.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF918OBX bigWig signal p-value ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF452GJT 428137431 ENCODE Processing Pipeline 405aadb79ba25292c5052cbd4124d3fa https://www.encodeproject.org/files/ENCFF918OBX/@@download/ENCFF918OBX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF926API bigBed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF107ZNB 12280162 ENCODE Processing Pipeline 3369a7dbe1a9aeb346e7407849a5e9f6 https://www.encodeproject.org/files/ENCFF926API/@@download/ENCFF926API.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF338FAD bed narrowPeak conservative idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF107ZNB, ENCFF193MSK, ENCFF874QGO 607857 ENCODE Processing Pipeline 731ff81a0d84b189aacd76c410853c64 https://www.encodeproject.org/files/ENCFF338FAD/@@download/ENCFF338FAD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF107ZNB bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF452GJT 6516602 ENCODE Processing Pipeline 3d124dcf08a60fb0a2030cbc4af0b7a4 https://www.encodeproject.org/files/ENCFF107ZNB/@@download/ENCFF107ZNB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF159FMQ bigBed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193MSK 12063393 ENCODE Processing Pipeline 82ebcb87c05793782d504516ca9db7ed https://www.encodeproject.org/files/ENCFF159FMQ/@@download/ENCFF159FMQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF417LLT bed narrowPeak optimal idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF107ZNB, ENCFF193MSK, ENCFF874QGO 681094 ENCODE Processing Pipeline 08061d9c15cd95cc4cbd862a4cb2617b https://www.encodeproject.org/files/ENCFF417LLT/@@download/ENCFF417LLT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF889BAR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF417LLT 1421762 ENCODE Processing Pipeline 1e6a7300f28cddf639750f0de0cc548b https://www.encodeproject.org/files/ENCFF889BAR/@@download/ENCFF889BAR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF186HFF bigBed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF874QGO 12124085 ENCODE Processing Pipeline 0939cade2669005d59990de260d973d0 https://www.encodeproject.org/files/ENCFF186HFF/@@download/ENCFF186HFF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF864BVL fastq reads ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 1 ENCFF076OOL 2707641734 Michael Snyder, Stanford 2c4fb3edb29d8833c02d9de62dbec06b https://www.encodeproject.org/files/ENCFF864BVL/@@download/ENCFF864BVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF076OOL fastq reads ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 2 ENCFF864BVL 2756697033 Michael Snyder, Stanford ffdaf3622faf09064a32390b3c58f2ae https://www.encodeproject.org/files/ENCFF076OOL/@@download/ENCFF076OOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF437JMW bam unfiltered alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF076OOL, ENCFF807MUK, ENCFF864BVL 6076040227 ENCODE Processing Pipeline d7b5f67f161120d75ae7eb62bf160365 https://www.encodeproject.org/files/ENCFF437JMW/@@download/ENCFF437JMW.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF116VYF bam unfiltered alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF076OOL, ENCFF643CGH, ENCFF864BVL 6082683938 ENCODE Processing Pipeline b663f17fc412e1e0feed0a7c47f6486f https://www.encodeproject.org/files/ENCFF116VYF/@@download/ENCFF116VYF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF068GSY bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF076OOL, ENCFF807MUK, ENCFF864BVL 5020529665 ENCODE Processing Pipeline 0fc2e457713c8ef2aac5a34f2ec7043a https://www.encodeproject.org/files/ENCFF068GSY/@@download/ENCFF068GSY.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF179SYB bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF076OOL, ENCFF643CGH, ENCFF864BVL 5023936314 ENCODE Processing Pipeline 050de7fd549e10f47b24484e41aadc46 https://www.encodeproject.org/files/ENCFF179SYB/@@download/ENCFF179SYB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF613BJA bigWig fold change over control ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF068GSY 1445520373 ENCODE Processing Pipeline 1f76201b9a0424bdcbe66d81bd469dfb https://www.encodeproject.org/files/ENCFF613BJA/@@download/ENCFF613BJA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF708LNB bigWig signal p-value ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF068GSY 1213763755 ENCODE Processing Pipeline c2f57d85fda8c4f71ea633ff57a908b8 https://www.encodeproject.org/files/ENCFF708LNB/@@download/ENCFF708LNB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF659AOT bigWig signal p-value ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF179SYB 1437175173 ENCODE Processing Pipeline 752e23aab17823a1d248ed86fcbdcdf0 https://www.encodeproject.org/files/ENCFF659AOT/@@download/ENCFF659AOT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF974CCL bigBed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF512ZRB 11246587 ENCODE Processing Pipeline c03977f91d7165aab1a18b1c45dba4c2 https://www.encodeproject.org/files/ENCFF974CCL/@@download/ENCFF974CCL.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF616VRG bigWig fold change over control ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF179SYB 1445296567 ENCODE Processing Pipeline c37efb462fd32c6bd82b5857fc74cb79 https://www.encodeproject.org/files/ENCFF616VRG/@@download/ENCFF616VRG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF554JDC bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF179SYB 6365466 ENCODE Processing Pipeline 0f49f942490fded88425e6aeac2032e4 https://www.encodeproject.org/files/ENCFF554JDC/@@download/ENCFF554JDC.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF492QRG bigBed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF554JDC 11255646 ENCODE Processing Pipeline 21fe6dd0f44afcf27f46583958a05ce4 https://www.encodeproject.org/files/ENCFF492QRG/@@download/ENCFF492QRG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF725NQI fastq reads ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 2 ENCFF456GTI 3184889324 Michael Snyder, Stanford 33cb7583f4467421d4450e385e2d6168 https://www.encodeproject.org/files/ENCFF725NQI/@@download/ENCFF725NQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF456GTI fastq reads ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 1 ENCFF725NQI 2812338442 Michael Snyder, Stanford 303fb6447a24adf7672531d080084eee https://www.encodeproject.org/files/ENCFF456GTI/@@download/ENCFF456GTI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF010OMZ bam unfiltered alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF456GTI, ENCFF725NQI, ENCFF807MUK 6094115683 ENCODE Processing Pipeline f191990d59bb319261c249f030730670 https://www.encodeproject.org/files/ENCFF010OMZ/@@download/ENCFF010OMZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF744EET bam unfiltered alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF456GTI, ENCFF643CGH, ENCFF725NQI 6101849802 ENCODE Processing Pipeline 6a2ce62076fe5dc839f2225980301988 https://www.encodeproject.org/files/ENCFF744EET/@@download/ENCFF744EET.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF430RTC bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF456GTI, ENCFF643CGH, ENCFF725NQI 5080560296 ENCODE Processing Pipeline 34f23fb1b40abbdc0951ff58226ceb88 https://www.encodeproject.org/files/ENCFF430RTC/@@download/ENCFF430RTC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF364DBG bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF456GTI, ENCFF725NQI, ENCFF807MUK 5080294554 ENCODE Processing Pipeline e9267eb3beca6c7e3a2ee2f65bebbf58 https://www.encodeproject.org/files/ENCFF364DBG/@@download/ENCFF364DBG.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF581UJL bigWig signal p-value ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF430RTC 1362524032 ENCODE Processing Pipeline ee959167c8804a9797cbcd7d6c66786d https://www.encodeproject.org/files/ENCFF581UJL/@@download/ENCFF581UJL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF610YUW bigWig signal p-value ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF068GSY, ENCFF364DBG 1962191777 ENCODE Processing Pipeline 3dbe1c054e925ab471ad0e8781701a47 https://www.encodeproject.org/files/ENCFF610YUW/@@download/ENCFF610YUW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF380BFM bigWig signal p-value ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF364DBG 1225129826 ENCODE Processing Pipeline ed77e1e1932372147f183ccd9b32da4e https://www.encodeproject.org/files/ENCFF380BFM/@@download/ENCFF380BFM.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF512ZRB bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF068GSY 6369099 ENCODE Processing Pipeline 7fb146e35dab7d9b4c74605720295384 https://www.encodeproject.org/files/ENCFF512ZRB/@@download/ENCFF512ZRB.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF150HBX bigWig fold change over control ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF430RTC 1304564885 ENCODE Processing Pipeline b60d1fe4d8d6beb38e49686b6d91d4fd https://www.encodeproject.org/files/ENCFF150HBX/@@download/ENCFF150HBX.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF692VFL bigWig signal p-value ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF179SYB, ENCFF430RTC 1963310132 ENCODE Processing Pipeline a0b53ffea3d39e36170a4e67985f854c https://www.encodeproject.org/files/ENCFF692VFL/@@download/ENCFF692VFL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF007AIU bigWig fold change over control ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF364DBG 1304201302 ENCODE Processing Pipeline 05809d576e9289e00b7b32a18e728c3c https://www.encodeproject.org/files/ENCFF007AIU/@@download/ENCFF007AIU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF527LIL bigWig fold change over control ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF068GSY, ENCFF364DBG 1972633880 ENCODE Processing Pipeline 22900c39289c0ed31b5c7831bb04a04e https://www.encodeproject.org/files/ENCFF527LIL/@@download/ENCFF527LIL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF778JLP bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF068GSY, ENCFF364DBG 6881268 ENCODE Processing Pipeline 9e6adfea44d9dc103acd6d99e1955a61 https://www.encodeproject.org/files/ENCFF778JLP/@@download/ENCFF778JLP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF739JWE bigBed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF935HJA 11419776 ENCODE Processing Pipeline 584943ce8283ea5da6169080997e6e2b https://www.encodeproject.org/files/ENCFF739JWE/@@download/ENCFF739JWE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF935HJA bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF364DBG 5792815 ENCODE Processing Pipeline 4bde03a3b8413208a0a2a9c40a44c638 https://www.encodeproject.org/files/ENCFF935HJA/@@download/ENCFF935HJA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF790BDI bigBed narrowPeak conservative idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF135FAV 21626 ENCODE Processing Pipeline cf1a59e6218ac5881d122a328097a7a0 https://www.encodeproject.org/files/ENCFF790BDI/@@download/ENCFF790BDI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF538EEF bigWig fold change over control ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF179SYB, ENCFF430RTC 1973879678 ENCODE Processing Pipeline 13108c9113b72f0e672a95c831b00647 https://www.encodeproject.org/files/ENCFF538EEF/@@download/ENCFF538EEF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF774LYA bed narrowPeak optimal idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF512ZRB, ENCFF778JLP, ENCFF935HJA 12533 ENCODE Processing Pipeline 027c1018282db0ce6004fe91343d5c15 https://www.encodeproject.org/files/ENCFF774LYA/@@download/ENCFF774LYA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF328MER bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF430RTC 5864879 ENCODE Processing Pipeline 085d0661b8ed5c82d544427105b44a4c https://www.encodeproject.org/files/ENCFF328MER/@@download/ENCFF328MER.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF135FAV bed narrowPeak conservative idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF512ZRB, ENCFF778JLP, ENCFF935HJA 516 ENCODE Processing Pipeline e4e7c59bacc698d210388fa533c9cd59 https://www.encodeproject.org/files/ENCFF135FAV/@@download/ENCFF135FAV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF265URB bigBed narrowPeak optimal idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF774LYA 62770 ENCODE Processing Pipeline d3a4d459444cc8987200a2274abde45f https://www.encodeproject.org/files/ENCFF265URB/@@download/ENCFF265URB.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF285WXY bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF179SYB, ENCFF430RTC 6875001 ENCODE Processing Pipeline 2a00a1134d447c027a58ec3421015d8e https://www.encodeproject.org/files/ENCFF285WXY/@@download/ENCFF285WXY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF404UEW bigBed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF778JLP 11351872 ENCODE Processing Pipeline d25741ceec06a9f417a73d5b9fc6dc2d https://www.encodeproject.org/files/ENCFF404UEW/@@download/ENCFF404UEW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF401CAV bigBed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF285WXY 11363037 ENCODE Processing Pipeline 57bdece27f5081dc339a7f22785cb8f4 https://www.encodeproject.org/files/ENCFF401CAV/@@download/ENCFF401CAV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF007RPI bigBed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF328MER 11435976 ENCODE Processing Pipeline ae063062e85fa9dc4c1cb8d8d0c39fa7 https://www.encodeproject.org/files/ENCFF007RPI/@@download/ENCFF007RPI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF025HFB bed narrowPeak conservative idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF285WXY, ENCFF328MER, ENCFF419RSJ, ENCFF554JDC 550 ENCODE Processing Pipeline 8424c1f84014262371ae4e5ce756e3f1 https://www.encodeproject.org/files/ENCFF025HFB/@@download/ENCFF025HFB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF207PJL bigBed narrowPeak conservative idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF025HFB 15255 ENCODE Processing Pipeline 6557da8955895ebd3ba424a7b102ad2b https://www.encodeproject.org/files/ENCFF207PJL/@@download/ENCFF207PJL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF618SQA bed narrowPeak optimal idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF285WXY, ENCFF328MER, ENCFF419RSJ, ENCFF554JDC 12622 ENCODE Processing Pipeline 42d8026a92545e0a4883fd26b105a362 https://www.encodeproject.org/files/ENCFF618SQA/@@download/ENCFF618SQA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF251BMM bigBed narrowPeak optimal idr thresholded peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF618SQA 74815 ENCODE Processing Pipeline 97f220bb9005668c46603074529dbe1f https://www.encodeproject.org/files/ENCFF251BMM/@@download/ENCFF251BMM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF786NAS bam unfiltered alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF568WKI, ENCFF807MUK 1613985473 ENCODE Processing Pipeline 8bdfc1c4324462390086e596e2986856 https://www.encodeproject.org/files/ENCFF786NAS/@@download/ENCFF786NAS.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF049FMJ bam unfiltered alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF925BQC 1930535172 ENCODE Processing Pipeline e759fd55d861557ecb39669bb1300fce https://www.encodeproject.org/files/ENCFF049FMJ/@@download/ENCFF049FMJ.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF925BQC fastq reads ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1767657511 Richard Myers, HAIB 3b25362bc60618558be000aeda2edaa8 SRA:SRR5338997 https://www.encodeproject.org/files/ENCFF925BQC/@@download/ENCFF925BQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF568WKI fastq reads ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 1484540564 Richard Myers, HAIB 1cd6bae0d802229a1eddf4012a7313cf SRA:SRR5338998 https://www.encodeproject.org/files/ENCFF568WKI/@@download/ENCFF568WKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF789MAE bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF568WKI, ENCFF807MUK 1265055721 ENCODE Processing Pipeline 7c3f577017337dfc877f035b28801b4b https://www.encodeproject.org/files/ENCFF789MAE/@@download/ENCFF789MAE.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF005ZLD bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF925BQC 1504758971 ENCODE Processing Pipeline a55a079f59b3c5f3bbccb5e282e6647a https://www.encodeproject.org/files/ENCFF005ZLD/@@download/ENCFF005ZLD.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF400ZWW bigWig signal p-value ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF005ZLD, ENCFF023YTY, ENCFF789MAE 436533199 ENCODE Processing Pipeline 1922f2ea0612e9cc10f2aad0ceee95a4 https://www.encodeproject.org/files/ENCFF400ZWW/@@download/ENCFF400ZWW.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF359JIF bigWig signal p-value ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF005ZLD, ENCFF023YTY 466379864 ENCODE Processing Pipeline 49cdc1baebe44cb91b5960d74fb7fe81 https://www.encodeproject.org/files/ENCFF359JIF/@@download/ENCFF359JIF.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF884EGA bigWig fold change over control ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF005ZLD, ENCFF023YTY 568279061 ENCODE Processing Pipeline f5e1d0f3ff69c2b54da2bccd1434e22b https://www.encodeproject.org/files/ENCFF884EGA/@@download/ENCFF884EGA.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF351ZNN bigWig signal p-value ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF789MAE 454696458 ENCODE Processing Pipeline f2ec387473b39fa3f0a7e64ab5cc21ee https://www.encodeproject.org/files/ENCFF351ZNN/@@download/ENCFF351ZNN.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF959XXG bigWig fold change over control ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF789MAE 501714663 ENCODE Processing Pipeline 92c062027756ab88cb9d24182cc9a4e7 https://www.encodeproject.org/files/ENCFF959XXG/@@download/ENCFF959XXG.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF567KLN bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF005ZLD, ENCFF023YTY, ENCFF789MAE 7216056 ENCODE Processing Pipeline 217feb0ec44dde695d5533d555feae5a https://www.encodeproject.org/files/ENCFF567KLN/@@download/ENCFF567KLN.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF043OFA bigWig fold change over control ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF005ZLD, ENCFF023YTY, ENCFF789MAE 937138685 ENCODE Processing Pipeline a1b76e1ff6f5ecfa2bce5a9321c1704b https://www.encodeproject.org/files/ENCFF043OFA/@@download/ENCFF043OFA.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF281XTE bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF005ZLD, ENCFF023YTY 6839297 ENCODE Processing Pipeline 475f78b28d4b220cf650b44a21a4dacb https://www.encodeproject.org/files/ENCFF281XTE/@@download/ENCFF281XTE.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF990PLG bigBed narrowPeak optimal idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF068FYV 563277 ENCODE Processing Pipeline 36a68ddac665e5903bb99431e23019bd https://www.encodeproject.org/files/ENCFF990PLG/@@download/ENCFF990PLG.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF654NDU bigBed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF281XTE 12660440 ENCODE Processing Pipeline a8673d021f484d85b099a6d95d48ea58 https://www.encodeproject.org/files/ENCFF654NDU/@@download/ENCFF654NDU.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF883FWT bigBed narrowPeak conservative idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF936VXH 531082 ENCODE Processing Pipeline 234b37a33ec4a72849aea695d5455402 https://www.encodeproject.org/files/ENCFF883FWT/@@download/ENCFF883FWT.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF888ZSX bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF789MAE 7004253 ENCODE Processing Pipeline fe69473eab30bfaadb16e8913525c417 https://www.encodeproject.org/files/ENCFF888ZSX/@@download/ENCFF888ZSX.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF988GPL bigBed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF567KLN 12421708 ENCODE Processing Pipeline 37a58821ac68158e2e73e262163a7768 https://www.encodeproject.org/files/ENCFF988GPL/@@download/ENCFF988GPL.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF286OYX bigBed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF888ZSX 12367166 ENCODE Processing Pipeline b7e069fe5b5f5c3f9d204f6eebe11662 https://www.encodeproject.org/files/ENCFF286OYX/@@download/ENCFF286OYX.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF936VXH bed narrowPeak conservative idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF281XTE, ENCFF567KLN, ENCFF888ZSX 221404 ENCODE Processing Pipeline 7e92044c756f10aa935c237c7c1f6fb6 https://www.encodeproject.org/files/ENCFF936VXH/@@download/ENCFF936VXH.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF068FYV bed narrowPeak optimal idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF281XTE, ENCFF567KLN, ENCFF888ZSX 239198 ENCODE Processing Pipeline ce2c7a88ed00459978440bfada14685f https://www.encodeproject.org/files/ENCFF068FYV/@@download/ENCFF068FYV.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF102BER bam unfiltered alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF925BQC 1937928461 ENCODE Processing Pipeline 1f5298366de361a105a99358a7a536e9 https://www.encodeproject.org/files/ENCFF102BER/@@download/ENCFF102BER.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF851YBK bam unfiltered alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF568WKI, ENCFF643CGH 1617974865 ENCODE Processing Pipeline 28b88479f49aeab472f6e2246dcd7610 https://www.encodeproject.org/files/ENCFF851YBK/@@download/ENCFF851YBK.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF474NTR bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF925BQC 1504686242 ENCODE Processing Pipeline 5d928cf801b833f529572456dd255dce https://www.encodeproject.org/files/ENCFF474NTR/@@download/ENCFF474NTR.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF746BQO bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF568WKI, ENCFF643CGH 1264796730 ENCODE Processing Pipeline 2db9e003a801e1b8a5a1433612d61094 https://www.encodeproject.org/files/ENCFF746BQO/@@download/ENCFF746BQO.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF147HRE bigWig signal p-value ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF474NTR, ENCFF582CVJ 469937320 ENCODE Processing Pipeline 0abd4ef6b44c3f9564796c87c89c5803 https://www.encodeproject.org/files/ENCFF147HRE/@@download/ENCFF147HRE.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF967ILG bigWig signal p-value ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF746BQO 456314832 ENCODE Processing Pipeline bad2e06452e85887a362ccef104e00b3 https://www.encodeproject.org/files/ENCFF967ILG/@@download/ENCFF967ILG.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF636JHS bigWig signal p-value ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF474NTR, ENCFF582CVJ, ENCFF746BQO 432780503 ENCODE Processing Pipeline 997f53faa3e583eb10c6fad137820979 https://www.encodeproject.org/files/ENCFF636JHS/@@download/ENCFF636JHS.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF290NAA bigWig fold change over control ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF474NTR, ENCFF582CVJ 591646163 ENCODE Processing Pipeline 27b56e597fa9ae420cd55f481a24acd3 https://www.encodeproject.org/files/ENCFF290NAA/@@download/ENCFF290NAA.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF511QYV bigWig fold change over control ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF746BQO 507680228 ENCODE Processing Pipeline 3cc64e79e16d73a33774a00b85c12b30 https://www.encodeproject.org/files/ENCFF511QYV/@@download/ENCFF511QYV.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF746ZQX bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF474NTR, ENCFF582CVJ 6724642 ENCODE Processing Pipeline da5f21b88dfa1298eb58934aada77930 https://www.encodeproject.org/files/ENCFF746ZQX/@@download/ENCFF746ZQX.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF912APY bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF746BQO 6901921 ENCODE Processing Pipeline a2f4e61aea92daf706a577ba5e320c3c https://www.encodeproject.org/files/ENCFF912APY/@@download/ENCFF912APY.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF689MEC bigBed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF912APY 12368649 ENCODE Processing Pipeline c6bc9a7c48df8264207275af41389dbb https://www.encodeproject.org/files/ENCFF689MEC/@@download/ENCFF689MEC.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF220WGP bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF474NTR, ENCFF582CVJ, ENCFF746BQO 7213766 ENCODE Processing Pipeline 1a054c8b5c367ff2152fb91733c76260 https://www.encodeproject.org/files/ENCFF220WGP/@@download/ENCFF220WGP.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF356PQD bigBed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF746ZQX 12654044 ENCODE Processing Pipeline 3cf2346286a91e07a142e0dba0a9f965 https://www.encodeproject.org/files/ENCFF356PQD/@@download/ENCFF356PQD.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF615LFZ bigWig fold change over control ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF474NTR, ENCFF582CVJ, ENCFF746BQO 926591658 ENCODE Processing Pipeline c07dc01c991a9715f2cd475f667f30d5 https://www.encodeproject.org/files/ENCFF615LFZ/@@download/ENCFF615LFZ.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF929VJO bigBed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF220WGP 12424089 ENCODE Processing Pipeline 525700f30919ffbf04eb9f0b9b19cff7 https://www.encodeproject.org/files/ENCFF929VJO/@@download/ENCFF929VJO.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF135EPJ bed narrowPeak conservative idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF220WGP, ENCFF419RSJ, ENCFF746ZQX, ENCFF912APY 220666 ENCODE Processing Pipeline a3c36ef8180ee34a32557dd92938b13e https://www.encodeproject.org/files/ENCFF135EPJ/@@download/ENCFF135EPJ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF507LPB bigBed narrowPeak conservative idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF135EPJ 528741 ENCODE Processing Pipeline 5ffbd2cee5981d1916a422c583cfd9f6 https://www.encodeproject.org/files/ENCFF507LPB/@@download/ENCFF507LPB.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF046ODH bed narrowPeak optimal idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF220WGP, ENCFF419RSJ, ENCFF746ZQX, ENCFF912APY 229623 ENCODE Processing Pipeline 6bd4e82309352b203a88ffef352e0faa https://www.encodeproject.org/files/ENCFF046ODH/@@download/ENCFF046ODH.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF594UAO bigBed narrowPeak optimal idr thresholded peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF046ODH 546489 ENCODE Processing Pipeline 6bf6f2b84a03c47ba7629fe84d12cf33 https://www.encodeproject.org/files/ENCFF594UAO/@@download/ENCFF594UAO.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF001HHN bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHX 279419288 John Stamatoyannopoulos, UW 6bf57205ed4b094c5435d80ac98449de https://www.encodeproject.org/files/ENCFF001HHN/@@download/ENCFF001HHN.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHO bigBed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPJ 2403599 John Stamatoyannopoulos, UW 124f9d469d55a0bfe806c83582c9126c https://www.encodeproject.org/files/ENCFF001HHO/@@download/ENCFF001HHO.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHP bigBed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPK 3536234 John Stamatoyannopoulos, UW 84c089cb78dd40d06038783021090c5f https://www.encodeproject.org/files/ENCFF001HHP/@@download/ENCFF001HHP.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHQ bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPL 817543 John Stamatoyannopoulos, UW ec956cc1f63b91d95d454e606a3bd300 https://www.encodeproject.org/files/ENCFF001HHQ/@@download/ENCFF001HHQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHR bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPM 1082568 John Stamatoyannopoulos, UW 416d2c3bd4b8768b8cf84a37272bbe44 https://www.encodeproject.org/files/ENCFF001HHR/@@download/ENCFF001HHR.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHS bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HIA 715536264 John Stamatoyannopoulos, UW 64f1eb5bcb0ed376216ffe589350d703 https://www.encodeproject.org/files/ENCFF001HHS/@@download/ENCFF001HHS.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHT bigWig raw signal ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 59582612 John Stamatoyannopoulos, UW 8168210048a5192e2e06bc4fa9a8e4b3 https://www.encodeproject.org/files/ENCFF001HHT/@@download/ENCFF001HHT.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHV bigWig raw signal ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 145558312 John Stamatoyannopoulos, UW da7a1e071607547b403f86feac3b499f https://www.encodeproject.org/files/ENCFF001HHV/@@download/ENCFF001HHV.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HHX fastq reads ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 479087832 John Stamatoyannopoulos, UW 81eedfd11fcdb0d7dc55f4c7a0d4dc37 https://www.encodeproject.org/files/ENCFF001HHX/@@download/ENCFF001HHX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HID/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HIA fastq reads ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1109985066 John Stamatoyannopoulos, UW 9ab5067b99eef80955a450838000d2c2 https://www.encodeproject.org/files/ENCFF001HIA/@@download/ENCFF001HIA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HID/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XPJ bed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 1581600 John Stamatoyannopoulos, UW e6745c2b6937d3592ff14b22b98eb564 https://www.encodeproject.org/files/ENCFF001XPJ/@@download/ENCFF001XPJ.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XPK bed broadPeak hotspots ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 2508567 John Stamatoyannopoulos, UW 6e91846731886d8f6409fd5264193bd5 https://www.encodeproject.org/files/ENCFF001XPK/@@download/ENCFF001XPK.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XPL bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 546105 John Stamatoyannopoulos, UW 05c13c8ad1f8447216514287c9a8cbf9 https://www.encodeproject.org/files/ENCFF001XPL/@@download/ENCFF001XPL.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XPM bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 768874 John Stamatoyannopoulos, UW db6a022f65cca2f4255919a9a665af29 https://www.encodeproject.org/files/ENCFF001XPM/@@download/ENCFF001XPM.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF002DCM bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HHN, ENCFF001HHS 826017 ENCODE Consortium Analysis Working Group a8c651b28667a589dbf0c29f9e45ab01 https://www.encodeproject.org/files/ENCFF002DCM/@@download/ENCFF002DCM.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF944NIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCM 1748178 ENCODE Consortium bbc18594ff049e2f926267a70ddabcb0 https://www.encodeproject.org/files/ENCFF944NIQ/@@download/ENCFF944NIQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF607GOG bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF807MUK 183423489 ENCODE Processing Pipeline b4ba9ee8399ed4012d5a2ff12000c928 https://www.encodeproject.org/files/ENCFF607GOG/@@download/ENCFF607GOG.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF298INA bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF807MUK 495330153 ENCODE Processing Pipeline cd153d1e8594b208107c3decd7b69801 https://www.encodeproject.org/files/ENCFF298INA/@@download/ENCFF298INA.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF172UCS bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF807MUK 1205584402 ENCODE Processing Pipeline 01f2b0cd052fa199f1534a89f7f02606 https://www.encodeproject.org/files/ENCFF172UCS/@@download/ENCFF172UCS.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF412PHP bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF807MUK 631731985 ENCODE Processing Pipeline 8b6466997936d72b8d187b8dcc3543c0 https://www.encodeproject.org/files/ENCFF412PHP/@@download/ENCFF412PHP.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF913XVH bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF643CGH 496213877 ENCODE Processing Pipeline 1334d889d6fc02934c67bcf53c44b52e https://www.encodeproject.org/files/ENCFF913XVH/@@download/ENCFF913XVH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF612FTS bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF643CGH 183394902 ENCODE Processing Pipeline d5fd44a12f628acb802e8364d2f463fa https://www.encodeproject.org/files/ENCFF612FTS/@@download/ENCFF612FTS.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF629BGK bam unfiltered alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF643CGH 1207814087 ENCODE Processing Pipeline d5be4167ab78a1991d34e4cda56e527b https://www.encodeproject.org/files/ENCFF629BGK/@@download/ENCFF629BGK.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF614VZE bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF643CGH 631888121 ENCODE Processing Pipeline bd7f32735cd4b78edf458aee1d5d214d https://www.encodeproject.org/files/ENCFF614VZE/@@download/ENCFF614VZE.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF144KUK bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 225671603 ENCODE Processing Pipeline 505b62fd3727db950a56667672a6a018 https://www.encodeproject.org/files/ENCFF144KUK/@@download/ENCFF144KUK.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF417LXA bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 272043579 ENCODE Processing Pipeline bc25a1ac5688a244b5984abee1f51ff4 https://www.encodeproject.org/files/ENCFF417LXA/@@download/ENCFF417LXA.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF913SOI bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 281456709 ENCODE Processing Pipeline bdd98e035376105acec8d5cc3715e73c https://www.encodeproject.org/files/ENCFF913SOI/@@download/ENCFF913SOI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF290FDG bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 78319969 ENCODE Processing Pipeline c30ead6e3ff9b81416801d2da8066749 https://www.encodeproject.org/files/ENCFF290FDG/@@download/ENCFF290FDG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF376GAM bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 219454869 ENCODE Processing Pipeline a084985853161edd0e7059b59ee8bb20 https://www.encodeproject.org/files/ENCFF376GAM/@@download/ENCFF376GAM.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF886KRA bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 277028426 ENCODE Processing Pipeline 0403f638f30b0bcdabb783e9c73bac2c https://www.encodeproject.org/files/ENCFF886KRA/@@download/ENCFF886KRA.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF303UAB bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 1748719 ENCODE Processing Pipeline b63e8c0ee9f5f7eb5feb22f98c885a56 https://www.encodeproject.org/files/ENCFF303UAB/@@download/ENCFF303UAB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF559IXF bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 3921477 ENCODE Processing Pipeline d2f733fe91eb768e2544200a7b2f1c49 https://www.encodeproject.org/files/ENCFF559IXF/@@download/ENCFF559IXF.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF918HTJ bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412PHP, ENCFF607GOG, ENCFF892TNJ 4163568 ENCODE Processing Pipeline ef3b80a1842c373d47bb829d5ab41e46 https://www.encodeproject.org/files/ENCFF918HTJ/@@download/ENCFF918HTJ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF218VZA bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF303UAB 3747249 ENCODE Processing Pipeline dc8196cdf293958a36c4654099dd716d https://www.encodeproject.org/files/ENCFF218VZA/@@download/ENCFF218VZA.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF935TEV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF963PJY 1082306 ENCODE Processing Pipeline ec3428b2d5b49c9e6072e20525b75b83 https://www.encodeproject.org/files/ENCFF935TEV/@@download/ENCFF935TEV.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF481UHI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF473RXY 1182993 ENCODE Processing Pipeline 19759806b970b54b44c3d5def633fbe2 https://www.encodeproject.org/files/ENCFF481UHI/@@download/ENCFF481UHI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF428VWG bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF559IXF 7848739 ENCODE Processing Pipeline acb4ef1758722fa86debba3975301e98 https://www.encodeproject.org/files/ENCFF428VWG/@@download/ENCFF428VWG.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF560OGB bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF918HTJ 10309538 ENCODE Processing Pipeline 537277502366d7da74bbfe8e63f0aa73 https://www.encodeproject.org/files/ENCFF560OGB/@@download/ENCFF560OGB.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF963PJY bed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF303UAB, ENCFF559IXF, ENCFF918HTJ 573102 ENCODE Processing Pipeline 35832d7990ec7d3240e3ddd9537b4b4d https://www.encodeproject.org/files/ENCFF963PJY/@@download/ENCFF963PJY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF473RXY bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF303UAB, ENCFF559IXF, ENCFF918HTJ 645089 ENCODE Processing Pipeline 9263eb7386faf2870ea728ae87b40a30 https://www.encodeproject.org/files/ENCFF473RXY/@@download/ENCFF473RXY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF239OQV bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 4165448 ENCODE Processing Pipeline 0b42ebbeff9603f5d9966a7d7466ef63 https://www.encodeproject.org/files/ENCFF239OQV/@@download/ENCFF239OQV.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF906GEW bed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV, ENCFF412MBV, ENCFF419RSJ, ENCFF507TTK 573881 ENCODE Processing Pipeline 9ef783fa7596e57208106836c453f8ef https://www.encodeproject.org/files/ENCFF906GEW/@@download/ENCFF906GEW.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF010KNM bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 244015115 ENCODE Processing Pipeline 260030575d6d85f021e1b9575f2128ed https://www.encodeproject.org/files/ENCFF010KNM/@@download/ENCFF010KNM.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF169QTG bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 272040626 ENCODE Processing Pipeline d48a6343611509e6a9f4db5efed26f9d https://www.encodeproject.org/files/ENCFF169QTG/@@download/ENCFF169QTG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF906HMR bigWig signal p-value ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 281539616 ENCODE Processing Pipeline 5d1cc9be42c0ef06a2ec3ca9d86abf06 https://www.encodeproject.org/files/ENCFF906HMR/@@download/ENCFF906HMR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF080RJS bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 77612715 ENCODE Processing Pipeline c22115a36e785ee3385425dffc9696f3 https://www.encodeproject.org/files/ENCFF080RJS/@@download/ENCFF080RJS.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF039MCF bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 218554798 ENCODE Processing Pipeline 70119b24169e0e2331ff43e57520bae5 https://www.encodeproject.org/files/ENCFF039MCF/@@download/ENCFF039MCF.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF852CRG bigWig fold change over control ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF094HMB, ENCFF612FTS, ENCFF614VZE 274309648 ENCODE Processing Pipeline 276c561593a5e32f0cab8dee20733ebc https://www.encodeproject.org/files/ENCFF852CRG/@@download/ENCFF852CRG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF412MBV bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF094HMB, ENCFF612FTS 1758149 ENCODE Processing Pipeline 0da10b68fa0cf613394bae9b50b914d6 https://www.encodeproject.org/files/ENCFF412MBV/@@download/ENCFF412MBV.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF507TTK bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF094HMB, ENCFF614VZE 3925685 ENCODE Processing Pipeline 869e8bd441e4a89337e943d4b48f1314 https://www.encodeproject.org/files/ENCFF507TTK/@@download/ENCFF507TTK.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF356JFU bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412MBV 3772727 ENCODE Processing Pipeline e93433a2e6ff211a9e109690058f5aab https://www.encodeproject.org/files/ENCFF356JFU/@@download/ENCFF356JFU.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF299SWN bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF507TTK 7851216 ENCODE Processing Pipeline 24a7273e44a52c57d765dffb8b24ef80 https://www.encodeproject.org/files/ENCFF299SWN/@@download/ENCFF299SWN.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF628KIB bigBed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV 10335823 ENCODE Processing Pipeline 2ba1c13f3d28f48c3c62d927379b1a83 https://www.encodeproject.org/files/ENCFF628KIB/@@download/ENCFF628KIB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF364HEO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF906GEW 1085250 ENCODE Processing Pipeline 1f8e15e98532c8f52f9f3d270fb98b2a https://www.encodeproject.org/files/ENCFF364HEO/@@download/ENCFF364HEO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF023RJC bed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239OQV, ENCFF412MBV, ENCFF419RSJ, ENCFF507TTK 647585 ENCODE Processing Pipeline 81b751432432db540066a8343a415cda https://www.encodeproject.org/files/ENCFF023RJC/@@download/ENCFF023RJC.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF848XDB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF023RJC 1188332 ENCODE Processing Pipeline e59aed9793782f99bb2a937811858d61 https://www.encodeproject.org/files/ENCFF848XDB/@@download/ENCFF848XDB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF178ZJY fastq reads ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 1 40 single-ended 489585792 Xiang-Dong Fu, UCSD bc37661b1e6f8bb9526aab24560f8ba5 SRA:SRR6214099 https://www.encodeproject.org/files/ENCFF178ZJY/@@download/ENCFF178ZJY.fastq.gz Illumina HiSeq 2000 /files/ENCFF577LLL/ released low read length, mild to moderate bottlenecking, low read depth ENCFF614UID fastq reads ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 1 40 single-ended 497327408 Xiang-Dong Fu, UCSD 17d462c367ac14c63b540922530f427a SRA:SRR6214098 https://www.encodeproject.org/files/ENCFF614UID/@@download/ENCFF614UID.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, mild to moderate bottlenecking, low read depth ENCFF007CIX bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF614UID, ENCFF807MUK 414952611 ENCODE Processing Pipeline ac1547844dd566444921eb7003201f74 https://www.encodeproject.org/files/ENCFF007CIX/@@download/ENCFF007CIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF923FKY bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF178ZJY, ENCFF807MUK 455234119 ENCODE Processing Pipeline d9a7b1e4ec18993b68dc8f99a8e35487 https://www.encodeproject.org/files/ENCFF923FKY/@@download/ENCFF923FKY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF079CXP bam unfiltered alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF178ZJY, ENCFF643CGH 688421298 ENCODE Processing Pipeline eb2251d295a11b94d4d4dea4c4d3dd1f https://www.encodeproject.org/files/ENCFF079CXP/@@download/ENCFF079CXP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF681ZXP bam unfiltered alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF614UID, ENCFF643CGH 679852590 ENCODE Processing Pipeline 921e46cbe46dcb20683128c3ce295aad https://www.encodeproject.org/files/ENCFF681ZXP/@@download/ENCFF681ZXP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF049VYL bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF178ZJY, ENCFF643CGH 454782666 ENCODE Processing Pipeline eced607a4f91ef6c7d1ba70ad9000605 https://www.encodeproject.org/files/ENCFF049VYL/@@download/ENCFF049VYL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF581TTB bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF614UID, ENCFF643CGH 414495631 ENCODE Processing Pipeline fafb0efedf37f4325be539f7b99b1e1e https://www.encodeproject.org/files/ENCFF581TTB/@@download/ENCFF581TTB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF464HBI bigWig signal p-value ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF007CIX, ENCFF493QSH, ENCFF641CEP, ENCFF923FKY 1050182465 ENCODE Processing Pipeline a60424a09887cee9e921e8b2735fdc8e https://www.encodeproject.org/files/ENCFF464HBI/@@download/ENCFF464HBI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF590AZG bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF493QSH, ENCFF923FKY 4878142 ENCODE Processing Pipeline 0107c937fd98ed8c82df77d05100ce01 https://www.encodeproject.org/files/ENCFF590AZG/@@download/ENCFF590AZG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF413TAL bigBed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF234WHY 13404309 ENCODE Processing Pipeline f72461d82ed0cc60b073b1ce523b6e1a https://www.encodeproject.org/files/ENCFF413TAL/@@download/ENCFF413TAL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF801PMI bigWig fold change over control ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF049VYL, ENCFF120YSP 349707873 ENCODE Processing Pipeline 8f351e5b03467109bc4f2014365b5d68 https://www.encodeproject.org/files/ENCFF801PMI/@@download/ENCFF801PMI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF437FGC bigWig signal p-value ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF493QSH, ENCFF923FKY 544603058 ENCODE Processing Pipeline 795975d68276e0d9415108a72bca1b64 https://www.encodeproject.org/files/ENCFF437FGC/@@download/ENCFF437FGC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF135QBU bigWig signal p-value ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF007CIX, ENCFF641CEP 685471332 ENCODE Processing Pipeline 6433b6ea726abbfc617f0d739a7b3259 https://www.encodeproject.org/files/ENCFF135QBU/@@download/ENCFF135QBU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF130KQG bigWig fold change over control ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF007CIX, ENCFF493QSH, ENCFF641CEP, ENCFF923FKY 851612102 ENCODE Processing Pipeline e6ed5ec08c4aace889411cf66aaaccf1 https://www.encodeproject.org/files/ENCFF130KQG/@@download/ENCFF130KQG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF025UGN bigBed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF625VEV 10774550 ENCODE Processing Pipeline b0f4dc3d12d56b646a62735756c2785c https://www.encodeproject.org/files/ENCFF025UGN/@@download/ENCFF025UGN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF346GSJ bigBed narrowPeak conservative idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF104JXU 74554 ENCODE Processing Pipeline 232059d968228facf0a130bcbeb128d1 https://www.encodeproject.org/files/ENCFF346GSJ/@@download/ENCFF346GSJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF861YKK bed narrowPeak optimal idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF234WHY, ENCFF590AZG, ENCFF625VEV 995 ENCODE Processing Pipeline 3ee133fba8a90d83577284278886088e https://www.encodeproject.org/files/ENCFF861YKK/@@download/ENCFF861YKK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF866HHT bigWig fold change over control ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF581TTB, ENCFF906SAI 356951721 ENCODE Processing Pipeline d41f318d79356574b9c825c3e647e633 https://www.encodeproject.org/files/ENCFF866HHT/@@download/ENCFF866HHT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF616ZKA bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF581TTB, ENCFF906SAI 5047062 ENCODE Processing Pipeline 533d6a822db6ca4108913571c97cbe32 https://www.encodeproject.org/files/ENCFF616ZKA/@@download/ENCFF616ZKA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF797STR bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF049VYL, ENCFF120YSP, ENCFF581TTB, ENCFF906SAI 6258160 ENCODE Processing Pipeline 41a5b78580d839da9186050b868db05f https://www.encodeproject.org/files/ENCFF797STR/@@download/ENCFF797STR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF431GUT bigBed narrowPeak optimal idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF861YKK 75577 ENCODE Processing Pipeline 559284f5522302310672d33241950982 https://www.encodeproject.org/files/ENCFF431GUT/@@download/ENCFF431GUT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF316VCK bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF049VYL, ENCFF120YSP 4949355 ENCODE Processing Pipeline 8d867ecc6c4db07b494f05aef4da0849 https://www.encodeproject.org/files/ENCFF316VCK/@@download/ENCFF316VCK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF790TCC bigBed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF316VCK 10989768 ENCODE Processing Pipeline 788f75cafd947b62cfac456be16fa19c https://www.encodeproject.org/files/ENCFF790TCC/@@download/ENCFF790TCC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF398FQP bigBed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF616ZKA 10967732 ENCODE Processing Pipeline ae5785c5eecc897331b6a68b121b9295 https://www.encodeproject.org/files/ENCFF398FQP/@@download/ENCFF398FQP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF022MND bigBed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF797STR 13431926 ENCODE Processing Pipeline 052f2d0e51b0ac5e6a63e8bcbf6038f7 https://www.encodeproject.org/files/ENCFF022MND/@@download/ENCFF022MND.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF520UWX bigWig fold change over control ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF493QSH, ENCFF923FKY 350017087 ENCODE Processing Pipeline 78e79310673ce2751416dc003aba6705 https://www.encodeproject.org/files/ENCFF520UWX/@@download/ENCFF520UWX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF406PFO bigWig fold change over control ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF007CIX, ENCFF641CEP 358736428 ENCODE Processing Pipeline cd8d349554ef06452cbefe7b0e57a42a https://www.encodeproject.org/files/ENCFF406PFO/@@download/ENCFF406PFO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF625VEV bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF007CIX, ENCFF641CEP 4967083 ENCODE Processing Pipeline 757d5f0a5458cf6810ed9912b8eec445 https://www.encodeproject.org/files/ENCFF625VEV/@@download/ENCFF625VEV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF234WHY bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF007CIX, ENCFF493QSH, ENCFF641CEP, ENCFF923FKY 6361662 ENCODE Processing Pipeline 42fc9246aa17eb0ca09b9bd9b1b13402 https://www.encodeproject.org/files/ENCFF234WHY/@@download/ENCFF234WHY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF398YTL bigBed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF590AZG 10798934 ENCODE Processing Pipeline 8fa0c2bbe6091dc1010ae05436935288 https://www.encodeproject.org/files/ENCFF398YTL/@@download/ENCFF398YTL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF495HMK bigWig signal p-value ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF049VYL, ENCFF120YSP 606013889 ENCODE Processing Pipeline 16eb3343d00eba055b34ae7376ba260b https://www.encodeproject.org/files/ENCFF495HMK/@@download/ENCFF495HMK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF881EBR bigWig signal p-value ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF581TTB, ENCFF906SAI 604970716 ENCODE Processing Pipeline 98a606413f1a967f0d22f0a8bb64ff8d https://www.encodeproject.org/files/ENCFF881EBR/@@download/ENCFF881EBR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF937WPQ bigWig fold change over control ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF049VYL, ENCFF120YSP, ENCFF581TTB, ENCFF906SAI 845456971 ENCODE Processing Pipeline bacd7d1dcc374250d06575abcbace06e https://www.encodeproject.org/files/ENCFF937WPQ/@@download/ENCFF937WPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF763SRM bed narrowPeak conservative idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF316VCK, ENCFF419RSJ, ENCFF616ZKA, ENCFF797STR 799 ENCODE Processing Pipeline 8b0fb16d35e8efec1c1e0c0091f8ba09 https://www.encodeproject.org/files/ENCFF763SRM/@@download/ENCFF763SRM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF104JXU bed narrowPeak conservative idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF234WHY, ENCFF590AZG, ENCFF625VEV 839 ENCODE Processing Pipeline 06dee73f89532d67b8db4444d9e2399e https://www.encodeproject.org/files/ENCFF104JXU/@@download/ENCFF104JXU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF042IKH bigWig signal p-value ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF049VYL, ENCFF120YSP, ENCFF581TTB, ENCFF906SAI 1206856875 ENCODE Processing Pipeline 66b74b73f9f85d9eed45797505e6355a https://www.encodeproject.org/files/ENCFF042IKH/@@download/ENCFF042IKH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF280CPG bigBed narrowPeak conservative idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF763SRM 74909 ENCODE Processing Pipeline 917ac53dbb79d10fd4490cca1dad0b1c https://www.encodeproject.org/files/ENCFF280CPG/@@download/ENCFF280CPG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF056OIG bed narrowPeak optimal idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF316VCK, ENCFF419RSJ, ENCFF616ZKA, ENCFF797STR 1140 ENCODE Processing Pipeline 22a5eafca87a39e5acee380bca87a5f4 https://www.encodeproject.org/files/ENCFF056OIG/@@download/ENCFF056OIG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF869TLE bigBed narrowPeak optimal idr thresholded peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF056OIG 30347 ENCODE Processing Pipeline 29324e9118d2f4df53a472d3799741fe https://www.encodeproject.org/files/ENCFF869TLE/@@download/ENCFF869TLE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF637NQL bam unfiltered alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF178ZJY, ENCFF807MUK 685428253 ENCODE Processing Pipeline 5b322a8056f86d263d09fff7e7144346 https://www.encodeproject.org/files/ENCFF637NQL/@@download/ENCFF637NQL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF947CCP bam unfiltered alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF614UID, ENCFF807MUK 677166759 ENCODE Processing Pipeline be0270da2d372118bd6471f4ac945873 https://www.encodeproject.org/files/ENCFF947CCP/@@download/ENCFF947CCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF097JYZ fastq reads ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF499VMV 3457708186 Michael Snyder, Stanford 2a9be8af612e31e1df2d23cd0bce6e97 SRA:SRR6212992 https://www.encodeproject.org/files/ENCFF097JYZ/@@download/ENCFF097JYZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF499VMV fastq reads ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF097JYZ 3863793978 Michael Snyder, Stanford ab02f52b0613da9bccddcf151f39fb50 SRA:SRR6212992 https://www.encodeproject.org/files/ENCFF499VMV/@@download/ENCFF499VMV.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF695OJN fastq reads ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF405EAB 2486443155 Michael Snyder, Stanford fea3385615d02443cca8470a3ca9acc5 SRA:SRR6212993 https://www.encodeproject.org/files/ENCFF695OJN/@@download/ENCFF695OJN.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF405EAB fastq reads ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF695OJN 2655596914 Michael Snyder, Stanford 501ca1f9d4c5e0f6aa18c4076dc5a646 SRA:SRR6212993 https://www.encodeproject.org/files/ENCFF405EAB/@@download/ENCFF405EAB.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF471RJC bam unfiltered alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 100 ENCFF405EAB, ENCFF695OJN, ENCFF807MUK 4918810442 ENCODE Processing Pipeline b85d47ee06d829e2d42a30aca92171fd https://www.encodeproject.org/files/ENCFF471RJC/@@download/ENCFF471RJC.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF244GIS bam unfiltered alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 100 ENCFF405EAB, ENCFF643CGH, ENCFF695OJN 4922005922 ENCODE Processing Pipeline 44b04e564c05c28c80929032dda0332d https://www.encodeproject.org/files/ENCFF244GIS/@@download/ENCFF244GIS.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF446AVI bam unfiltered alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 100 ENCFF097JYZ, ENCFF499VMV, ENCFF643CGH 6778132757 ENCODE Processing Pipeline c040f4776d76a068dad9fef69eb4f0fe https://www.encodeproject.org/files/ENCFF446AVI/@@download/ENCFF446AVI.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF905ZPU bam unfiltered alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 100 ENCFF097JYZ, ENCFF499VMV, ENCFF807MUK 6774592933 ENCODE Processing Pipeline 7c0a40f4f6822354fbc499698910336d https://www.encodeproject.org/files/ENCFF905ZPU/@@download/ENCFF905ZPU.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF014SFP bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 100 ENCFF405EAB, ENCFF695OJN, ENCFF807MUK 2980516037 ENCODE Processing Pipeline 712d94deca661091728cc0788bd0f6a0 https://www.encodeproject.org/files/ENCFF014SFP/@@download/ENCFF014SFP.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF574EKT bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 100 ENCFF405EAB, ENCFF643CGH, ENCFF695OJN 2982228404 ENCODE Processing Pipeline 1bd0138d5b8006178c077c698d8d51ca https://www.encodeproject.org/files/ENCFF574EKT/@@download/ENCFF574EKT.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF749BVC bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 100 ENCFF097JYZ, ENCFF499VMV, ENCFF643CGH 4431271918 ENCODE Processing Pipeline e52df2aeff5f064996c8e748dd05c8e3 https://www.encodeproject.org/files/ENCFF749BVC/@@download/ENCFF749BVC.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF407LUN bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 100 ENCFF097JYZ, ENCFF499VMV, ENCFF807MUK 4427847708 ENCODE Processing Pipeline d306f46b0e1467cd3bd7a056ada8b4c3 https://www.encodeproject.org/files/ENCFF407LUN/@@download/ENCFF407LUN.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF126XXM bigWig signal p-value ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF160VXC, ENCFF407LUN 1357214973 ENCODE Processing Pipeline 34197e9cacd0517224526d70e1681d3f https://www.encodeproject.org/files/ENCFF126XXM/@@download/ENCFF126XXM.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF143NSU bigWig signal p-value ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF014SFP, ENCFF834TUP 935456269 ENCODE Processing Pipeline 7fc0b39dd45e21594343ab724027a7d4 https://www.encodeproject.org/files/ENCFF143NSU/@@download/ENCFF143NSU.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF233IJY bigWig signal p-value ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF014SFP, ENCFF160VXC, ENCFF407LUN, ENCFF834TUP 1739237390 ENCODE Processing Pipeline 35534ab14b7d4d712a5463c129a8319b https://www.encodeproject.org/files/ENCFF233IJY/@@download/ENCFF233IJY.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF099FHV bigWig fold change over control ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF014SFP, ENCFF834TUP 1101135617 ENCODE Processing Pipeline 3bde8b64257fed3fd91d6b60c06bd68d https://www.encodeproject.org/files/ENCFF099FHV/@@download/ENCFF099FHV.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF476NOR bigWig fold change over control ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF160VXC, ENCFF407LUN 1443346661 ENCODE Processing Pipeline f8907802b47e0cdad165c50fcf0c0ffd https://www.encodeproject.org/files/ENCFF476NOR/@@download/ENCFF476NOR.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF635LIW bigWig fold change over control ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF014SFP, ENCFF160VXC, ENCFF407LUN, ENCFF834TUP 2232978265 ENCODE Processing Pipeline 538e9d20045ae28bb833e62ef1c993ae https://www.encodeproject.org/files/ENCFF635LIW/@@download/ENCFF635LIW.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF714MAA bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF014SFP, ENCFF834TUP 6450400 ENCODE Processing Pipeline c9b8e7a77956632bae4156d7541e7c46 https://www.encodeproject.org/files/ENCFF714MAA/@@download/ENCFF714MAA.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF990DZB bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF160VXC, ENCFF407LUN 6755474 ENCODE Processing Pipeline 47b3c1de68cdf273fd28f9de5cab4719 https://www.encodeproject.org/files/ENCFF990DZB/@@download/ENCFF990DZB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF698FIR bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF014SFP, ENCFF160VXC, ENCFF407LUN, ENCFF834TUP 7150857 ENCODE Processing Pipeline 3ad86d7030ce9d3b846e4ae8a20f65ca https://www.encodeproject.org/files/ENCFF698FIR/@@download/ENCFF698FIR.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF757GIF bigBed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF714MAA 11053669 ENCODE Processing Pipeline 9ef7e7ec7ec6c6b37cc9028373d2f6d5 https://www.encodeproject.org/files/ENCFF757GIF/@@download/ENCFF757GIF.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF725UGV bigBed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF990DZB 11193511 ENCODE Processing Pipeline 0390efa92e5ca5550cf2c3194d4d88f8 https://www.encodeproject.org/files/ENCFF725UGV/@@download/ENCFF725UGV.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF831WPC bigBed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF698FIR 10846732 ENCODE Processing Pipeline 964d1af6406c0d79121a7cc7f31fa24f https://www.encodeproject.org/files/ENCFF831WPC/@@download/ENCFF831WPC.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF752OUI bed narrowPeak conservative idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF698FIR, ENCFF714MAA, ENCFF990DZB 21283 ENCODE Processing Pipeline 599dc329ea7e29f64c6422ff1d2286ea https://www.encodeproject.org/files/ENCFF752OUI/@@download/ENCFF752OUI.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF671BFH bed narrowPeak optimal idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF698FIR, ENCFF714MAA, ENCFF990DZB 34358 ENCODE Processing Pipeline c44172703df20404cda031ffc4f73a10 https://www.encodeproject.org/files/ENCFF671BFH/@@download/ENCFF671BFH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF498DMN bigBed narrowPeak conservative idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF135SOK 92131 ENCODE Processing Pipeline 2a3c8c9427a2ee7b65ce73c65680ba5c https://www.encodeproject.org/files/ENCFF498DMN/@@download/ENCFF498DMN.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF221ODZ bigBed narrowPeak optimal idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF551UCC 112560 ENCODE Processing Pipeline aa64680df029ec02be39329c650e41a6 https://www.encodeproject.org/files/ENCFF221ODZ/@@download/ENCFF221ODZ.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF802YZA bigWig signal p-value ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF574EKT, ENCFF712WXB 947680548 ENCODE Processing Pipeline 9cb13d4b85ac462c3414f153c4487cec https://www.encodeproject.org/files/ENCFF802YZA/@@download/ENCFF802YZA.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF795MRC bigWig signal p-value ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF749BVC, ENCFF790TAN 1234505973 ENCODE Processing Pipeline f3da604e3dc7e6fa549568f43518d801 https://www.encodeproject.org/files/ENCFF795MRC/@@download/ENCFF795MRC.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF708IDH bigWig signal p-value ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF574EKT, ENCFF712WXB, ENCFF749BVC, ENCFF790TAN 1660572159 ENCODE Processing Pipeline 1fad79fa0595670e100b76f37aed56df https://www.encodeproject.org/files/ENCFF708IDH/@@download/ENCFF708IDH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF158LJD bigWig fold change over control ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF574EKT, ENCFF712WXB 1107288016 ENCODE Processing Pipeline 26a1538ad52a43973c68ba2ac9b30c6d https://www.encodeproject.org/files/ENCFF158LJD/@@download/ENCFF158LJD.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF038GNL bigWig fold change over control ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF749BVC, ENCFF790TAN 1446306033 ENCODE Processing Pipeline 18e01b1c21caf0b38376e95c0cc8aada https://www.encodeproject.org/files/ENCFF038GNL/@@download/ENCFF038GNL.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF887SKH bigWig fold change over control ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF574EKT, ENCFF712WXB, ENCFF749BVC, ENCFF790TAN 2243797065 ENCODE Processing Pipeline 5fb8c68de2505f738362810996e0862a https://www.encodeproject.org/files/ENCFF887SKH/@@download/ENCFF887SKH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF352WFB bigBed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF890OYV 10860864 ENCODE Processing Pipeline 78f02cb3c5249c0e1c480516542686bb https://www.encodeproject.org/files/ENCFF352WFB/@@download/ENCFF352WFB.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF890OYV bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF574EKT, ENCFF712WXB, ENCFF749BVC, ENCFF790TAN 7127345 ENCODE Processing Pipeline 2109c39d8585fa38c80c2e653124d032 https://www.encodeproject.org/files/ENCFF890OYV/@@download/ENCFF890OYV.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF109WLT bigBed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF426KPY 11056714 ENCODE Processing Pipeline ff309774b6b81e56f434bca67eebae9f https://www.encodeproject.org/files/ENCFF109WLT/@@download/ENCFF109WLT.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF426KPY bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF574EKT, ENCFF712WXB 6336961 ENCODE Processing Pipeline 2e10ac50c9631caa441a32d8720910bb https://www.encodeproject.org/files/ENCFF426KPY/@@download/ENCFF426KPY.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF371YLX bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF749BVC, ENCFF790TAN 6619117 ENCODE Processing Pipeline 2f8157687c8a81d9e4d1e0b0fa0e19be https://www.encodeproject.org/files/ENCFF371YLX/@@download/ENCFF371YLX.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF733CDM bigBed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF371YLX 11206969 ENCODE Processing Pipeline f4f356a640db25606f40b993ae2f2b8f https://www.encodeproject.org/files/ENCFF733CDM/@@download/ENCFF733CDM.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF268KJK bigBed narrowPeak conservative idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF359ERT 93575 ENCODE Processing Pipeline ca8e429cb9dff74877d513de874bf3fa https://www.encodeproject.org/files/ENCFF268KJK/@@download/ENCFF268KJK.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF048MMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF309DMZ 115394 ENCODE Processing Pipeline 1c10cecd9859dabd37d013d1a33ad0f6 https://www.encodeproject.org/files/ENCFF048MMQ/@@download/ENCFF048MMQ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF359ERT bed narrowPeak conservative idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF371YLX, ENCFF419RSJ, ENCFF426KPY, ENCFF890OYV 21270 ENCODE Processing Pipeline fbfc8f800ed2cf8dea52612c6098b4e5 https://www.encodeproject.org/files/ENCFF359ERT/@@download/ENCFF359ERT.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF309DMZ bed narrowPeak optimal idr thresholded peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF371YLX, ENCFF419RSJ, ENCFF426KPY, ENCFF890OYV 35340 ENCODE Processing Pipeline 5fdfd9eb0058a8399efabab7c738d564 https://www.encodeproject.org/files/ENCFF309DMZ/@@download/ENCFF309DMZ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF503DWZ fastq reads ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2109602865 Richard Myers, HAIB 55fdea54293a10bb91d50beb303507fa SRA:SRR5338821 https://www.encodeproject.org/files/ENCFF503DWZ/@@download/ENCFF503DWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF414QOO fastq reads ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2173113057 Richard Myers, HAIB fc436893de911485435bef3aa70cbf32 SRA:SRR5338820 https://www.encodeproject.org/files/ENCFF414QOO/@@download/ENCFF414QOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF674GBH bam unfiltered alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 76 ENCFF503DWZ, ENCFF643CGH 2333458835 ENCODE Processing Pipeline b72ced5c9615da8373e1a8b885713757 https://www.encodeproject.org/files/ENCFF674GBH/@@download/ENCFF674GBH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF137PQJ bam unfiltered alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 76 ENCFF503DWZ, ENCFF807MUK 2328053620 ENCODE Processing Pipeline dbddfae1043841b0d671372f0b54c2f5 https://www.encodeproject.org/files/ENCFF137PQJ/@@download/ENCFF137PQJ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF196MHW bam unfiltered alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 76 ENCFF414QOO, ENCFF643CGH 2401383889 ENCODE Processing Pipeline d05bf9b2d349ed5cf959b86f43f6d90e https://www.encodeproject.org/files/ENCFF196MHW/@@download/ENCFF196MHW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF910PZS bam unfiltered alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 76 ENCFF414QOO, ENCFF807MUK 2395906957 ENCODE Processing Pipeline f846f8aee2de19e4937e2bc794964016 https://www.encodeproject.org/files/ENCFF910PZS/@@download/ENCFF910PZS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF002JBN bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 76 ENCFF503DWZ, ENCFF807MUK 1690825859 ENCODE Processing Pipeline 0c900a9e47cf84a0a85f8aa5c87c09d7 https://www.encodeproject.org/files/ENCFF002JBN/@@download/ENCFF002JBN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF852ZPS bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 76 ENCFF503DWZ, ENCFF643CGH 1691832631 ENCODE Processing Pipeline 108c131f3065514af1ab1bbbe1ebe4ee https://www.encodeproject.org/files/ENCFF852ZPS/@@download/ENCFF852ZPS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF783EIO bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 76 ENCFF414QOO, ENCFF643CGH 1764240034 ENCODE Processing Pipeline 1a67af784748513233439a7594103817 https://www.encodeproject.org/files/ENCFF783EIO/@@download/ENCFF783EIO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF812AFI bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 76 ENCFF414QOO, ENCFF807MUK 1763252877 ENCODE Processing Pipeline 58200b869892093104beadffb5588995 https://www.encodeproject.org/files/ENCFF812AFI/@@download/ENCFF812AFI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF628HVK bigWig signal p-value ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF783EIO 648728315 ENCODE Processing Pipeline b21e984000f0cd2f88e3d96fca00895a https://www.encodeproject.org/files/ENCFF628HVK/@@download/ENCFF628HVK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF890JGI bigWig signal p-value ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF852ZPS 609882103 ENCODE Processing Pipeline 7e5e188d0abc018a63a5deb592c22a13 https://www.encodeproject.org/files/ENCFF890JGI/@@download/ENCFF890JGI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF144RER bigWig signal p-value ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF783EIO, ENCFF852ZPS 637607652 ENCODE Processing Pipeline a56d3a3257a347df4955810bd68a4939 https://www.encodeproject.org/files/ENCFF144RER/@@download/ENCFF144RER.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF214LRH bigWig fold change over control ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF783EIO 646175060 ENCODE Processing Pipeline 120d20fd969ec337bb9966def085a8d2 https://www.encodeproject.org/files/ENCFF214LRH/@@download/ENCFF214LRH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF440TDW bigWig fold change over control ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF852ZPS 593404675 ENCODE Processing Pipeline 0aa4561dd265b25d9304c99b1d641c5d https://www.encodeproject.org/files/ENCFF440TDW/@@download/ENCFF440TDW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF404QLC bigWig fold change over control ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF783EIO, ENCFF852ZPS 1029443650 ENCODE Processing Pipeline f74d37de4bd29b53f96780963784c6e9 https://www.encodeproject.org/files/ENCFF404QLC/@@download/ENCFF404QLC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF660IJM bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF783EIO 6153221 ENCODE Processing Pipeline 0af7f91b794149a8752df7c9cb2179fc https://www.encodeproject.org/files/ENCFF660IJM/@@download/ENCFF660IJM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF252CSI bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF852ZPS 6362944 ENCODE Processing Pipeline 7c533eb95cac2dc6018f35c6e7c67c73 https://www.encodeproject.org/files/ENCFF252CSI/@@download/ENCFF252CSI.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF726JQT bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF783EIO, ENCFF852ZPS 6903191 ENCODE Processing Pipeline c56c5904db4d3a4f3b0210c14975ae41 https://www.encodeproject.org/files/ENCFF726JQT/@@download/ENCFF726JQT.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF958NMV bigBed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF660IJM 13117715 ENCODE Processing Pipeline a2887f946897f40422f66fdf7f9ed851 https://www.encodeproject.org/files/ENCFF958NMV/@@download/ENCFF958NMV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF048WXX bigBed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF252CSI 13131050 ENCODE Processing Pipeline 0b198130f2a65251593de8076d39064a https://www.encodeproject.org/files/ENCFF048WXX/@@download/ENCFF048WXX.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851YVH bigBed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF726JQT 13073346 ENCODE Processing Pipeline 399fcf3b2b0b70857475498ea0d0b00f https://www.encodeproject.org/files/ENCFF851YVH/@@download/ENCFF851YVH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF615GQC bed narrowPeak conservative idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF252CSI, ENCFF419RSJ, ENCFF660IJM, ENCFF726JQT 390215 ENCODE Processing Pipeline 310cc414cf579e49d01a46c3a1637630 https://www.encodeproject.org/files/ENCFF615GQC/@@download/ENCFF615GQC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF253CWZ bed narrowPeak optimal idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF252CSI, ENCFF419RSJ, ENCFF660IJM, ENCFF726JQT 425309 ENCODE Processing Pipeline d2f26d30b637145ed426f2b114813d33 https://www.encodeproject.org/files/ENCFF253CWZ/@@download/ENCFF253CWZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683KCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF253CWZ 820312 ENCODE Processing Pipeline f2f29780e1e7dfddf69287397bcf919e https://www.encodeproject.org/files/ENCFF683KCZ/@@download/ENCFF683KCZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF427BNP bigBed narrowPeak conservative idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF615GQC 766587 ENCODE Processing Pipeline 127f1721e88dfafec079ab275b5bc34f https://www.encodeproject.org/files/ENCFF427BNP/@@download/ENCFF427BNP.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF021HEK bigWig signal p-value ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF812AFI 1371358255 ENCODE Processing Pipeline 386e3fe4993b6b234e78f370120d7979 https://www.encodeproject.org/files/ENCFF021HEK/@@download/ENCFF021HEK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF829JIA bigWig signal p-value ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF002JBN, ENCFF203ABR 1166850855 ENCODE Processing Pipeline 541e76f455363557b0dfc6bec15bdc91 https://www.encodeproject.org/files/ENCFF829JIA/@@download/ENCFF829JIA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF122EOB bigWig signal p-value ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF002JBN, ENCFF203ABR, ENCFF812AFI 1353221721 ENCODE Processing Pipeline d1eee2b7036250931fa011ffe79ed8e7 https://www.encodeproject.org/files/ENCFF122EOB/@@download/ENCFF122EOB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF061FPP bigWig fold change over control ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF812AFI 1342740625 ENCODE Processing Pipeline 24085aabe65d734d43fdf289b586cbca https://www.encodeproject.org/files/ENCFF061FPP/@@download/ENCFF061FPP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF197ZYN bigWig fold change over control ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF002JBN, ENCFF203ABR 1125793318 ENCODE Processing Pipeline 221a5effb38320b031e5c05af1944892 https://www.encodeproject.org/files/ENCFF197ZYN/@@download/ENCFF197ZYN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF220ZAV bigWig fold change over control ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF002JBN, ENCFF203ABR, ENCFF812AFI 1723158428 ENCODE Processing Pipeline c08fe36434d2a7c31dc897ab3f40960c https://www.encodeproject.org/files/ENCFF220ZAV/@@download/ENCFF220ZAV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF592XOZ bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF812AFI 7091873 ENCODE Processing Pipeline 62bd68e7d446973230c3f75a8ac39eb2 https://www.encodeproject.org/files/ENCFF592XOZ/@@download/ENCFF592XOZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF478HJZ bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF002JBN, ENCFF203ABR 6793978 ENCODE Processing Pipeline 6113f8155a3ff1a367aeefca94b33c59 https://www.encodeproject.org/files/ENCFF478HJZ/@@download/ENCFF478HJZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF097CCR bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF002JBN, ENCFF203ABR, ENCFF812AFI 7240451 ENCODE Processing Pipeline 7236c7d760ad971536390592963774af https://www.encodeproject.org/files/ENCFF097CCR/@@download/ENCFF097CCR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521YFC bigBed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF592XOZ 12881605 ENCODE Processing Pipeline 4fba8df13f498d26c55e5553eb67a369 https://www.encodeproject.org/files/ENCFF521YFC/@@download/ENCFF521YFC.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF322JAN bigBed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF478HJZ 13076500 ENCODE Processing Pipeline 24e053c701b4e1b216135a5a07644ce5 https://www.encodeproject.org/files/ENCFF322JAN/@@download/ENCFF322JAN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF145WHG bigBed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF097CCR 12654530 ENCODE Processing Pipeline e9e8282ce59281cdb66d2679c1c50b1c https://www.encodeproject.org/files/ENCFF145WHG/@@download/ENCFF145WHG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF315YNI bed narrowPeak conservative idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF097CCR, ENCFF478HJZ, ENCFF592XOZ 349662 ENCODE Processing Pipeline 75ad00485bbc8b5b97f06f0fca222008 https://www.encodeproject.org/files/ENCFF315YNI/@@download/ENCFF315YNI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF171YGF bigBed narrowPeak conservative idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF315YNI 716874 ENCODE Processing Pipeline f6991d3052dab6bdeca2a7242b9ccb92 https://www.encodeproject.org/files/ENCFF171YGF/@@download/ENCFF171YGF.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF629ZKI bigBed narrowPeak optimal idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF849MAQ 715317 ENCODE Processing Pipeline 52da87ae5edc042026d19f4649d1438c https://www.encodeproject.org/files/ENCFF629ZKI/@@download/ENCFF629ZKI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF849MAQ bed narrowPeak optimal idr thresholded peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF097CCR, ENCFF478HJZ, ENCFF592XOZ 348114 ENCODE Processing Pipeline 39cd59f63fa3a6458cb5370e7418e573 https://www.encodeproject.org/files/ENCFF849MAQ/@@download/ENCFF849MAQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF063SWH fastq reads ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 1 ENCFF660BZO 1744901101 Michael Snyder, Stanford cd3e48c755a0c610bc9930651d9b4033 https://www.encodeproject.org/files/ENCFF063SWH/@@download/ENCFF063SWH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF660BZO fastq reads ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 2 ENCFF063SWH 1722607473 Michael Snyder, Stanford ad1fa6d332d50b49a157993136867f00 https://www.encodeproject.org/files/ENCFF660BZO/@@download/ENCFF660BZO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF435WLJ bam unfiltered alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF063SWH, ENCFF643CGH, ENCFF660BZO 4030732608 ENCODE Processing Pipeline 580d1d1d29f6df7b568cf395ef7cd2f1 https://www.encodeproject.org/files/ENCFF435WLJ/@@download/ENCFF435WLJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF550YJY bam unfiltered alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF063SWH, ENCFF660BZO, ENCFF807MUK 4025612534 ENCODE Processing Pipeline cfb13cb226ca9c102fd0fd47451b5a7d https://www.encodeproject.org/files/ENCFF550YJY/@@download/ENCFF550YJY.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF361UHD bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF063SWH, ENCFF660BZO, ENCFF807MUK 3412103451 ENCODE Processing Pipeline 8b38278490cda05269e5fc74f525bc04 https://www.encodeproject.org/files/ENCFF361UHD/@@download/ENCFF361UHD.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF433KBE bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF063SWH, ENCFF643CGH, ENCFF660BZO 3412450308 ENCODE Processing Pipeline 7a3deb459bd8e3b25e6d1c4e7ef9bc49 https://www.encodeproject.org/files/ENCFF433KBE/@@download/ENCFF433KBE.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF171YPS bigWig signal p-value ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF433KBE 1233697834 ENCODE Processing Pipeline a5986fa2f4baa98b4f6fea778c00fa89 https://www.encodeproject.org/files/ENCFF171YPS/@@download/ENCFF171YPS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF213LYF bigWig signal p-value ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF361UHD 1106266326 ENCODE Processing Pipeline b3526df1e094577846a1360b2b30133b https://www.encodeproject.org/files/ENCFF213LYF/@@download/ENCFF213LYF.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF862UFU bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF433KBE 6934167 ENCODE Processing Pipeline 511382b4397eccacf28f60ed4a64936a https://www.encodeproject.org/files/ENCFF862UFU/@@download/ENCFF862UFU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF047VUT bigWig fold change over control ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF361UHD 1158259336 ENCODE Processing Pipeline c4997851efe0d03174459a937bf0d244 https://www.encodeproject.org/files/ENCFF047VUT/@@download/ENCFF047VUT.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF488VOO bigBed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF684ZXB 13195911 ENCODE Processing Pipeline bd94106751cbfd93908576a91a8dda0e https://www.encodeproject.org/files/ENCFF488VOO/@@download/ENCFF488VOO.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF684ZXB bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF361UHD 6997592 ENCODE Processing Pipeline 3f68ecf5dec36d3a911e45c00c8dfb47 https://www.encodeproject.org/files/ENCFF684ZXB/@@download/ENCFF684ZXB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF022FGE bigWig fold change over control ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF433KBE 1157333295 ENCODE Processing Pipeline 67255cfd3461462ff5b84151af774163 https://www.encodeproject.org/files/ENCFF022FGE/@@download/ENCFF022FGE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF590MZJ bigBed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF862UFU 13131009 ENCODE Processing Pipeline 61cb046d708486ebedc2c5cb0646f1cd https://www.encodeproject.org/files/ENCFF590MZJ/@@download/ENCFF590MZJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF442RWO fastq reads ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 2 ENCFF895TQT 5285949499 Michael Snyder, Stanford ee37ff8aee45e1b6124852f99cb71a41 https://www.encodeproject.org/files/ENCFF442RWO/@@download/ENCFF442RWO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF895TQT fastq reads ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 1 ENCFF442RWO 5175774774 Michael Snyder, Stanford 8ac1ac9cfb2a00a30278d81c1b8c8461 https://www.encodeproject.org/files/ENCFF895TQT/@@download/ENCFF895TQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF649CZV bam unfiltered alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF442RWO, ENCFF807MUK, ENCFF895TQT 9844851165 ENCODE Processing Pipeline ccdba2a6a20d53c4da1d7eb2603312f8 https://www.encodeproject.org/files/ENCFF649CZV/@@download/ENCFF649CZV.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF665CMT bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF442RWO, ENCFF807MUK, ENCFF895TQT 7966704087 ENCODE Processing Pipeline 385208c889ed361ea7b48ae36da7260f https://www.encodeproject.org/files/ENCFF665CMT/@@download/ENCFF665CMT.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF374XVW bam unfiltered alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF442RWO, ENCFF643CGH, ENCFF895TQT 9855140031 ENCODE Processing Pipeline 87497af402ff42eb32c09862fd6a378e https://www.encodeproject.org/files/ENCFF374XVW/@@download/ENCFF374XVW.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF718QAG bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF442RWO, ENCFF643CGH, ENCFF895TQT 7964768619 ENCODE Processing Pipeline 92e69cac9482680b5c30013a69921011 https://www.encodeproject.org/files/ENCFF718QAG/@@download/ENCFF718QAG.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF384WVC bigWig signal p-value ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF665CMT 1364030942 ENCODE Processing Pipeline c4a24d864c31bdc332cf28201669a5af https://www.encodeproject.org/files/ENCFF384WVC/@@download/ENCFF384WVC.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF458PTM bigWig signal p-value ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF433KBE, ENCFF718QAG 1976517988 ENCODE Processing Pipeline 3f2c350bdf2ea3f5d4cadcebd12a1bc7 https://www.encodeproject.org/files/ENCFF458PTM/@@download/ENCFF458PTM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF541YKA bigWig fold change over control ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF665CMT 1841503264 ENCODE Processing Pipeline 5396accaea36ca369b370357e76a3820 https://www.encodeproject.org/files/ENCFF541YKA/@@download/ENCFF541YKA.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF932DYB bigWig signal p-value ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF361UHD, ENCFF665CMT 1961698017 ENCODE Processing Pipeline c8595e5f53a735f15de2a60464b063cb https://www.encodeproject.org/files/ENCFF932DYB/@@download/ENCFF932DYB.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF714SYO bigWig signal p-value ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF718QAG 1358013850 ENCODE Processing Pipeline b928e2e3ae49bf8638d547f3ee3b7638 https://www.encodeproject.org/files/ENCFF714SYO/@@download/ENCFF714SYO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF940GBV bigWig fold change over control ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF718QAG 1842909134 ENCODE Processing Pipeline 8552f115cfadc5506152b4acb63f835b https://www.encodeproject.org/files/ENCFF940GBV/@@download/ENCFF940GBV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF584SDJ bigWig fold change over control ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF361UHD, ENCFF665CMT 2163190188 ENCODE Processing Pipeline 74c38bbf439d7f73f5fd8f9d28b95d58 https://www.encodeproject.org/files/ENCFF584SDJ/@@download/ENCFF584SDJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF892CIJ bigBed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF721BRG 13372017 ENCODE Processing Pipeline cfec1c2d991dbc3b9545b51f8d968619 https://www.encodeproject.org/files/ENCFF892CIJ/@@download/ENCFF892CIJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF755YWN bigBed narrowPeak conservative idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF126VKN 1295362 ENCODE Processing Pipeline 748f63faeac685f4a0de9d8e46a609e3 https://www.encodeproject.org/files/ENCFF755YWN/@@download/ENCFF755YWN.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF742AUT bigWig fold change over control ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF433KBE, ENCFF718QAG 2177508832 ENCODE Processing Pipeline 44bbbc172f6d0f3b2ad2776c7edf91b7 https://www.encodeproject.org/files/ENCFF742AUT/@@download/ENCFF742AUT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF721BRG bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF361UHD, ENCFF665CMT 7305667 ENCODE Processing Pipeline 6d0f549687b33e9f9e83f1ec999bab23 https://www.encodeproject.org/files/ENCFF721BRG/@@download/ENCFF721BRG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF339GWX bed narrowPeak optimal idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF308KQO, ENCFF684ZXB, ENCFF721BRG 1046186 ENCODE Processing Pipeline df4159fc3ceb2940185f926e83912733 https://www.encodeproject.org/files/ENCFF339GWX/@@download/ENCFF339GWX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF308KQO bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF665CMT 7145254 ENCODE Processing Pipeline 8ca206784639fb96754eb5ccbd07ed58 https://www.encodeproject.org/files/ENCFF308KQO/@@download/ENCFF308KQO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF732SAT bigBed narrowPeak optimal idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF339GWX 1795603 ENCODE Processing Pipeline a4d672ca8cd659d8be3cc51dd6b5b22f https://www.encodeproject.org/files/ENCFF732SAT/@@download/ENCFF732SAT.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF053MHP bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF718QAG 7148343 ENCODE Processing Pipeline 9352efabdbef872a993bd44e72e6e647 https://www.encodeproject.org/files/ENCFF053MHP/@@download/ENCFF053MHP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF215YUS bigBed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF308KQO 13397685 ENCODE Processing Pipeline c5f631b02b2d0137e9521f3e42e4d901 https://www.encodeproject.org/files/ENCFF215YUS/@@download/ENCFF215YUS.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF126VKN bed narrowPeak conservative idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF308KQO, ENCFF684ZXB, ENCFF721BRG 692633 ENCODE Processing Pipeline f2b806221bae9ed7c1e89daae080ba3d https://www.encodeproject.org/files/ENCFF126VKN/@@download/ENCFF126VKN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF545TRU bigBed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF053MHP 13405974 ENCODE Processing Pipeline 8559ff06e8c7faff3f7ec587fa2bd925 https://www.encodeproject.org/files/ENCFF545TRU/@@download/ENCFF545TRU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF505QMF bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF433KBE, ENCFF718QAG 7307948 ENCODE Processing Pipeline e8a78b8be25a5447322e6176b7f0abbf https://www.encodeproject.org/files/ENCFF505QMF/@@download/ENCFF505QMF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF103BFQ bed narrowPeak conservative idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF053MHP, ENCFF419RSJ, ENCFF505QMF, ENCFF862UFU 693653 ENCODE Processing Pipeline ee6a97dd4d08d2450f4f50edba54f857 https://www.encodeproject.org/files/ENCFF103BFQ/@@download/ENCFF103BFQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF989QLB bigBed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF505QMF 13379133 ENCODE Processing Pipeline 18a2e54ae91b9c48167e05f77510f52d https://www.encodeproject.org/files/ENCFF989QLB/@@download/ENCFF989QLB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF383GAP bigBed narrowPeak conservative idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF103BFQ 1295756 ENCODE Processing Pipeline c79c8bcab2a524e7f58fcdbd22aea43f https://www.encodeproject.org/files/ENCFF383GAP/@@download/ENCFF383GAP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF554RDX bed narrowPeak optimal idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF053MHP, ENCFF419RSJ, ENCFF505QMF, ENCFF862UFU 1044618 ENCODE Processing Pipeline 7553d7254e2d58dfe807df5479d9eb4b https://www.encodeproject.org/files/ENCFF554RDX/@@download/ENCFF554RDX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF284PWK bigBed narrowPeak optimal idr thresholded peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF554RDX 1793434 ENCODE Processing Pipeline fd4c945f362bbf35c8218fdc7b8d0861 https://www.encodeproject.org/files/ENCFF284PWK/@@download/ENCFF284PWK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF661FBG fastq reads ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF621DBV 2137654415 Michael Snyder, Stanford 20329d3b95ffaeec963ec8eb12b06b19 SRA:SRR6213896 https://www.encodeproject.org/files/ENCFF661FBG/@@download/ENCFF661FBG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF621DBV fastq reads ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF661FBG 2163889852 Michael Snyder, Stanford f4208d7d48237c4cecdabefbd452b624 SRA:SRR6213896 https://www.encodeproject.org/files/ENCFF621DBV/@@download/ENCFF621DBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF380XRO fastq reads ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF883WMZ 2098973163 Michael Snyder, Stanford 96088c8312a463635b62a318a59f77ac SRA:SRR6213897 https://www.encodeproject.org/files/ENCFF380XRO/@@download/ENCFF380XRO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF883WMZ fastq reads ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF380XRO 2121612421 Michael Snyder, Stanford 4dfa20d4c5f0bd046a372f88136e6f74 SRA:SRR6213897 https://www.encodeproject.org/files/ENCFF883WMZ/@@download/ENCFF883WMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF665ONW bam unfiltered alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF621DBV, ENCFF643CGH, ENCFF661FBG 4415618217 ENCODE Processing Pipeline d53d62eb0060ce2363482b5caaca3a83 https://www.encodeproject.org/files/ENCFF665ONW/@@download/ENCFF665ONW.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF282OMA bam unfiltered alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF380XRO, ENCFF807MUK, ENCFF883WMZ 4340786487 ENCODE Processing Pipeline 924c08984a36675abb2c38410860f7a6 https://www.encodeproject.org/files/ENCFF282OMA/@@download/ENCFF282OMA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF512RTB bam unfiltered alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF621DBV, ENCFF661FBG, ENCFF807MUK 4408925629 ENCODE Processing Pipeline 7e0e112c943381611c0b9a8c42dfceb5 https://www.encodeproject.org/files/ENCFF512RTB/@@download/ENCFF512RTB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF228XTL bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF621DBV, ENCFF643CGH, ENCFF661FBG 3735130345 ENCODE Processing Pipeline 31f34cec6186836330d5048429d194fb https://www.encodeproject.org/files/ENCFF228XTL/@@download/ENCFF228XTL.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF651TWV bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF621DBV, ENCFF661FBG, ENCFF807MUK 3733349439 ENCODE Processing Pipeline 07f164d3f977c7b407246b4c1ee363e9 https://www.encodeproject.org/files/ENCFF651TWV/@@download/ENCFF651TWV.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF086HLM bam unfiltered alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF380XRO, ENCFF643CGH, ENCFF883WMZ 4347968436 ENCODE Processing Pipeline 26f3dac7047bff526e35187301f2cb03 https://www.encodeproject.org/files/ENCFF086HLM/@@download/ENCFF086HLM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF193OQZ bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF380XRO, ENCFF807MUK, ENCFF883WMZ 3715643923 ENCODE Processing Pipeline fa0f74a98dc01431bc6d4cc31a18cfe8 https://www.encodeproject.org/files/ENCFF193OQZ/@@download/ENCFF193OQZ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF525BUR bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF380XRO, ENCFF643CGH, ENCFF883WMZ 3717021182 ENCODE Processing Pipeline aa86579c38071192077e0913f8fa58c5 https://www.encodeproject.org/files/ENCFF525BUR/@@download/ENCFF525BUR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF783DCP bigWig signal p-value ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF651TWV 1329721098 ENCODE Processing Pipeline 95f2e14f6eb1ad28f57f4d9146c48a15 https://www.encodeproject.org/files/ENCFF783DCP/@@download/ENCFF783DCP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF491QPV bigWig signal p-value ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193OQZ 1111606000 ENCODE Processing Pipeline 3cb87085c34768638040edce0190204c https://www.encodeproject.org/files/ENCFF491QPV/@@download/ENCFF491QPV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF633ZQI bigWig signal p-value ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF193OQZ, ENCFF651TWV 1715915295 ENCODE Processing Pipeline d9efa5bbefcbd290c1ca5e7292069e9a https://www.encodeproject.org/files/ENCFF633ZQI/@@download/ENCFF633ZQI.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF034ASK bigWig fold change over control ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF651TWV 1273065679 ENCODE Processing Pipeline 0efc8f4577fc0401605dead0fc2c35a9 https://www.encodeproject.org/files/ENCFF034ASK/@@download/ENCFF034ASK.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF182CGD bigWig fold change over control ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193OQZ 1268381510 ENCODE Processing Pipeline a9d0e7f343b8f9402b726187d0b406ff https://www.encodeproject.org/files/ENCFF182CGD/@@download/ENCFF182CGD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF831KYV bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF193OQZ, ENCFF651TWV 6938380 ENCODE Processing Pipeline 5b0e2ccdd99d906a1968afdd07176963 https://www.encodeproject.org/files/ENCFF831KYV/@@download/ENCFF831KYV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF087SHL bed narrowPeak conservative idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF354WRC, ENCFF818OAI, ENCFF831KYV 54404 ENCODE Processing Pipeline 03ba7ec030c3bf9c1de48d7729822f57 https://www.encodeproject.org/files/ENCFF087SHL/@@download/ENCFF087SHL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF998QEF bigWig fold change over control ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF193OQZ, ENCFF651TWV 1823985076 ENCODE Processing Pipeline 020497f9d52f9741b28dc5b61441546d https://www.encodeproject.org/files/ENCFF998QEF/@@download/ENCFF998QEF.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF818OAI bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193OQZ 6068734 ENCODE Processing Pipeline 157fc7406e7fb3b443234d6114ec83a1 https://www.encodeproject.org/files/ENCFF818OAI/@@download/ENCFF818OAI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF226MRR bigBed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF354WRC 11312583 ENCODE Processing Pipeline 6ea235de77a386892162fc76edd7a547 https://www.encodeproject.org/files/ENCFF226MRR/@@download/ENCFF226MRR.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF218HZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF087SHL 147340 ENCODE Processing Pipeline aeea0579425e7a7338f3be94ad0c8bfd https://www.encodeproject.org/files/ENCFF218HZZ/@@download/ENCFF218HZZ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF995SUV bigBed narrowPeak optimal idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF078VMK 165168 ENCODE Processing Pipeline 73492226893cae3ff1d67deca43f95fc https://www.encodeproject.org/files/ENCFF995SUV/@@download/ENCFF995SUV.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF452ZVO bigBed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF831KYV 11106519 ENCODE Processing Pipeline f37e9ed57acb3dced134487f07faddad https://www.encodeproject.org/files/ENCFF452ZVO/@@download/ENCFF452ZVO.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF064NQN bigBed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF818OAI 11260797 ENCODE Processing Pipeline a05af7022b2b18189fbfe37d85d9dc95 https://www.encodeproject.org/files/ENCFF064NQN/@@download/ENCFF064NQN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF078VMK bed narrowPeak optimal idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF354WRC, ENCFF818OAI, ENCFF831KYV 66576 ENCODE Processing Pipeline 512a2d0ebce5f3651fbff974bf6a17ef https://www.encodeproject.org/files/ENCFF078VMK/@@download/ENCFF078VMK.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF354WRC bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF651TWV 6180696 ENCODE Processing Pipeline 88d328e3fa2d9d7e8efa8a115fdf0017 https://www.encodeproject.org/files/ENCFF354WRC/@@download/ENCFF354WRC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF457LUS bigWig signal p-value ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF228XTL, ENCFF525BUR 1823884726 ENCODE Processing Pipeline 7d511dfbc1d5ebd8114783559217dabe https://www.encodeproject.org/files/ENCFF457LUS/@@download/ENCFF457LUS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF680WAK bigWig signal p-value ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF228XTL 1265031850 ENCODE Processing Pipeline ed4e280b6064dcda824b4c17bb7f66c4 https://www.encodeproject.org/files/ENCFF680WAK/@@download/ENCFF680WAK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF616FZJ bigWig signal p-value ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF525BUR 1337560484 ENCODE Processing Pipeline bed1541e4694e7753ca78029481715ad https://www.encodeproject.org/files/ENCFF616FZJ/@@download/ENCFF616FZJ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF629DSC bigWig fold change over control ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF228XTL 1272621531 ENCODE Processing Pipeline 660c795366da57da03200fcd1dd140ce https://www.encodeproject.org/files/ENCFF629DSC/@@download/ENCFF629DSC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF415AAV bigWig fold change over control ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF525BUR 1263192412 ENCODE Processing Pipeline 277190cb19d28cc16d1334b13768e959 https://www.encodeproject.org/files/ENCFF415AAV/@@download/ENCFF415AAV.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF331LPR bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF228XTL, ENCFF525BUR 6947109 ENCODE Processing Pipeline c5f55fede485d9abd8d71e4d5e1d2ae3 https://www.encodeproject.org/files/ENCFF331LPR/@@download/ENCFF331LPR.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF238PMU bigBed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF028FOU 11329189 ENCODE Processing Pipeline 083fa6fb455f7688c4ad8685cd43bee3 https://www.encodeproject.org/files/ENCFF238PMU/@@download/ENCFF238PMU.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF113PLA bigWig fold change over control ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF228XTL, ENCFF525BUR 1820160199 ENCODE Processing Pipeline 3ce34aecaa38848fb1701c5347f3466c https://www.encodeproject.org/files/ENCFF113PLA/@@download/ENCFF113PLA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF340NAK bigBed narrowPeak conservative idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF811PBG 148608 ENCODE Processing Pipeline f5588977f2a503fc7d01fecb7b57cc29 https://www.encodeproject.org/files/ENCFF340NAK/@@download/ENCFF340NAK.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF120IOK bigBed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF331LPR 11159598 ENCODE Processing Pipeline 18e41d762a0a4287072633eb4224b374 https://www.encodeproject.org/files/ENCFF120IOK/@@download/ENCFF120IOK.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF028FOU bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF228XTL 6177314 ENCODE Processing Pipeline ee12f3a0ec7744372fbeed67744695af https://www.encodeproject.org/files/ENCFF028FOU/@@download/ENCFF028FOU.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF192QEG bed narrowPeak optimal idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF028FOU, ENCFF331LPR, ENCFF419RSJ, ENCFF585HXF 67769 ENCODE Processing Pipeline d73f844f3da9c4fd391fb7c6843e41c3 https://www.encodeproject.org/files/ENCFF192QEG/@@download/ENCFF192QEG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF585HXF bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF525BUR 6065516 ENCODE Processing Pipeline 708379086c407d3cf8b91249b8458ff8 https://www.encodeproject.org/files/ENCFF585HXF/@@download/ENCFF585HXF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF788IVA bigBed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF585HXF 11273075 ENCODE Processing Pipeline 289a80a2cc705e9261d04ee0a6185e53 https://www.encodeproject.org/files/ENCFF788IVA/@@download/ENCFF788IVA.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF811PBG bed narrowPeak conservative idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF028FOU, ENCFF331LPR, ENCFF419RSJ, ENCFF585HXF 54720 ENCODE Processing Pipeline fd3e98762c935c52f20f18d3a0ceef20 https://www.encodeproject.org/files/ENCFF811PBG/@@download/ENCFF811PBG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF447TZS bigBed narrowPeak optimal idr thresholded peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF192QEG 167813 ENCODE Processing Pipeline c1978eab3abb8e1403fd1967599e92c0 https://www.encodeproject.org/files/ENCFF447TZS/@@download/ENCFF447TZS.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF612WBL fastq reads ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 2 ENCFF402TFM 3952414243 Michael Snyder, Stanford 0d117840c8e76ee4433cf09b98aae008 SRA:SRR5111678 https://www.encodeproject.org/files/ENCFF612WBL/@@download/ENCFF612WBL.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released ENCFF402TFM fastq reads ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 1 ENCFF612WBL 3562504136 Michael Snyder, Stanford 6bea626be7d183a500236e86028a42a6 SRA:SRR5111678 https://www.encodeproject.org/files/ENCFF402TFM/@@download/ENCFF402TFM.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released ENCFF059WXQ fastq reads ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 2 ENCFF281DBV 3160593100 Michael Snyder, Stanford 58d8ec61297cc1c1ceb406edc216fb45 SRA:SRR5111679 https://www.encodeproject.org/files/ENCFF059WXQ/@@download/ENCFF059WXQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released ENCFF281DBV fastq reads ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 1 ENCFF059WXQ 3088076532 Michael Snyder, Stanford fce8f6c0004418c89b0ce8d819f5b809 SRA:SRR5111679 https://www.encodeproject.org/files/ENCFF281DBV/@@download/ENCFF281DBV.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released ENCFF852QTA bam unfiltered alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 100 ENCFF059WXQ, ENCFF281DBV, ENCFF643CGH 6318574819 ENCODE Processing Pipeline a9c41bb805d1af51a1896f01cb2b3048 https://www.encodeproject.org/files/ENCFF852QTA/@@download/ENCFF852QTA.bam GRCh38 released ENCFF049UXR bam unfiltered alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 100 ENCFF059WXQ, ENCFF281DBV, ENCFF807MUK 6307014512 ENCODE Processing Pipeline 4f2dce66e37ab64356e835d247cb1a68 https://www.encodeproject.org/files/ENCFF049UXR/@@download/ENCFF049UXR.bam hg19 released ENCFF524RQU bam unfiltered alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 100 ENCFF402TFM, ENCFF612WBL, ENCFF807MUK 7403296759 ENCODE Processing Pipeline c34b9504e52356f99ea81e1cdb1f2b6a https://www.encodeproject.org/files/ENCFF524RQU/@@download/ENCFF524RQU.bam hg19 released ENCFF988WOM bam unfiltered alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 100 ENCFF402TFM, ENCFF612WBL, ENCFF643CGH 7417614228 ENCODE Processing Pipeline 8182cc3fb9dc0cc3d4b930410967c91d https://www.encodeproject.org/files/ENCFF988WOM/@@download/ENCFF988WOM.bam GRCh38 released ENCFF326PVE bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 100 ENCFF059WXQ, ENCFF281DBV, ENCFF807MUK 4512528105 ENCODE Processing Pipeline 07023c2f2b4c4ff39db47cd3f099f336 https://www.encodeproject.org/files/ENCFF326PVE/@@download/ENCFF326PVE.bam hg19 released ENCFF763DOU bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 100 ENCFF059WXQ, ENCFF281DBV, ENCFF643CGH 4518501259 ENCODE Processing Pipeline f4b70a5b3a501eebc47edc135a75d4b7 https://www.encodeproject.org/files/ENCFF763DOU/@@download/ENCFF763DOU.bam GRCh38 released ENCFF008NUZ bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 100 ENCFF402TFM, ENCFF612WBL, ENCFF807MUK 5512927162 ENCODE Processing Pipeline 2f2352bddc04359dbbc341871023918a https://www.encodeproject.org/files/ENCFF008NUZ/@@download/ENCFF008NUZ.bam hg19 released ENCFF003ETE bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 100 ENCFF402TFM, ENCFF612WBL, ENCFF643CGH 5521331462 ENCODE Processing Pipeline b951263307e374fc3c4fc870674bda90 https://www.encodeproject.org/files/ENCFF003ETE/@@download/ENCFF003ETE.bam GRCh38 released ENCFF506TQT bigWig signal p-value ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF326PVE, ENCFF447KVS, ENCFF823USR 1653947237 ENCODE Processing Pipeline 9dfbf00959faf028eaf91942c416d9e8 https://www.encodeproject.org/files/ENCFF506TQT/@@download/ENCFF506TQT.bigWig hg19 released ENCFF720ULE bigWig signal p-value ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF008NUZ, ENCFF447KVS, ENCFF823USR 1646016484 ENCODE Processing Pipeline f6e22bb39c7024c6195c247383611d95 https://www.encodeproject.org/files/ENCFF720ULE/@@download/ENCFF720ULE.bigWig hg19 released ENCFF380IIP bigWig signal p-value ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF008NUZ, ENCFF326PVE, ENCFF447KVS, ENCFF823USR 2318189008 ENCODE Processing Pipeline 91993b3e33730e7c83f36d008bde7948 https://www.encodeproject.org/files/ENCFF380IIP/@@download/ENCFF380IIP.bigWig hg19 released ENCFF888NGA bigWig fold change over control ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF326PVE, ENCFF447KVS, ENCFF823USR 1663237731 ENCODE Processing Pipeline e41bf9b11ecda48393d7e5eba19b9071 https://www.encodeproject.org/files/ENCFF888NGA/@@download/ENCFF888NGA.bigWig hg19 released ENCFF235MSL bigWig fold change over control ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF008NUZ, ENCFF447KVS, ENCFF823USR 1877738913 ENCODE Processing Pipeline 295b1eeaca8b2bdce27dc63bf6f0f8c4 https://www.encodeproject.org/files/ENCFF235MSL/@@download/ENCFF235MSL.bigWig hg19 released ENCFF768XUV bigWig fold change over control ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF008NUZ, ENCFF326PVE, ENCFF447KVS, ENCFF823USR 2344778162 ENCODE Processing Pipeline 11be63ca875ab7157874b5c225c31e89 https://www.encodeproject.org/files/ENCFF768XUV/@@download/ENCFF768XUV.bigWig hg19 released ENCFF697TMT bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF326PVE, ENCFF447KVS, ENCFF823USR 6795165 ENCODE Processing Pipeline 90199c725555873d557f11cf1b75fe36 https://www.encodeproject.org/files/ENCFF697TMT/@@download/ENCFF697TMT.bed.gz hg19 released ENCFF938OWG bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF008NUZ, ENCFF447KVS, ENCFF823USR 6973358 ENCODE Processing Pipeline 7fb325e570a491b88cfd776e14a00fa7 https://www.encodeproject.org/files/ENCFF938OWG/@@download/ENCFF938OWG.bed.gz hg19 released ENCFF195SFI bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF008NUZ, ENCFF326PVE, ENCFF447KVS, ENCFF823USR 7292540 ENCODE Processing Pipeline 2f1bc4b627901f2097232ade014094f3 https://www.encodeproject.org/files/ENCFF195SFI/@@download/ENCFF195SFI.bed.gz hg19 released ENCFF945CZX bigBed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF697TMT 11277815 ENCODE Processing Pipeline 34b03ab7ffa1a263a25ab27c7a81f4c0 https://www.encodeproject.org/files/ENCFF945CZX/@@download/ENCFF945CZX.bigBed hg19 released ENCFF414WXS bigBed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF938OWG 11127168 ENCODE Processing Pipeline 23bf72a12db408c9167db824962ad38c https://www.encodeproject.org/files/ENCFF414WXS/@@download/ENCFF414WXS.bigBed hg19 released ENCFF779RJE bigBed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF195SFI 11144445 ENCODE Processing Pipeline aa7d573ef3b81b91e1165fac2f0c4f66 https://www.encodeproject.org/files/ENCFF779RJE/@@download/ENCFF779RJE.bigBed hg19 released ENCFF995KRK bed narrowPeak conservative idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF195SFI, ENCFF697TMT, ENCFF938OWG 33115 ENCODE Processing Pipeline e18fd21f47cc01970e13129cbf1ee752 https://www.encodeproject.org/files/ENCFF995KRK/@@download/ENCFF995KRK.bed.gz hg19 released ENCFF624NEA bigBed narrowPeak conservative idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF995KRK 132390 ENCODE Processing Pipeline b816c4d4e1f4b1410e8ddcc861684b0b https://www.encodeproject.org/files/ENCFF624NEA/@@download/ENCFF624NEA.bigBed hg19 released ENCFF231VAA bed narrowPeak optimal idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF195SFI, ENCFF697TMT, ENCFF938OWG 56375 ENCODE Processing Pipeline 88eb6873f70ac1b132216ad014effc17 https://www.encodeproject.org/files/ENCFF231VAA/@@download/ENCFF231VAA.bed.gz hg19 released ENCFF541MYF bigBed narrowPeak optimal idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF231VAA 178070 ENCODE Processing Pipeline aeb17a40631d4089bac95692c1dfc5c1 https://www.encodeproject.org/files/ENCFF541MYF/@@download/ENCFF541MYF.bigBed hg19 released ENCFF536MTY bigWig signal p-value ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF763DOU 1666792864 ENCODE Processing Pipeline fa090b9f08e2cf7df45a9e6eccf7a13c https://www.encodeproject.org/files/ENCFF536MTY/@@download/ENCFF536MTY.bigWig GRCh38 released ENCFF039VGL bigWig signal p-value ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF003ETE, ENCFF191XYH, ENCFF746SKT 1619026230 ENCODE Processing Pipeline 16abde435c4720097aeb9e8e63bd8757 https://www.encodeproject.org/files/ENCFF039VGL/@@download/ENCFF039VGL.bigWig GRCh38 released ENCFF317FET bigWig signal p-value ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF003ETE, ENCFF191XYH, ENCFF746SKT, ENCFF763DOU 2325652135 ENCODE Processing Pipeline 4c598eafbabc6851e680ef2d4317f4f7 https://www.encodeproject.org/files/ENCFF317FET/@@download/ENCFF317FET.bigWig GRCh38 released ENCFF100AVU bigWig fold change over control ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF763DOU 1640833406 ENCODE Processing Pipeline 4357f66ae6c88600d19e3412e3ab0076 https://www.encodeproject.org/files/ENCFF100AVU/@@download/ENCFF100AVU.bigWig GRCh38 released ENCFF855WEY bigWig fold change over control ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF003ETE, ENCFF191XYH, ENCFF746SKT 1890038932 ENCODE Processing Pipeline ca82cf1f3eece7c0708a2a95292febfc https://www.encodeproject.org/files/ENCFF855WEY/@@download/ENCFF855WEY.bigWig GRCh38 released ENCFF496ETO bigWig fold change over control ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF003ETE, ENCFF191XYH, ENCFF746SKT, ENCFF763DOU 2352089902 ENCODE Processing Pipeline 67ddbcb90c85aed2d0d5ec0f6ebabca8 https://www.encodeproject.org/files/ENCFF496ETO/@@download/ENCFF496ETO.bigWig GRCh38 released ENCFF180SDP bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF763DOU 6682036 ENCODE Processing Pipeline 3b344fc2ffeec683fc4c1f42595025c5 https://www.encodeproject.org/files/ENCFF180SDP/@@download/ENCFF180SDP.bed.gz GRCh38 released ENCFF163ITP bigBed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF487ZXI 11161542 ENCODE Processing Pipeline 89d00170fcbed140eb3f673fa42ed851 https://www.encodeproject.org/files/ENCFF163ITP/@@download/ENCFF163ITP.bigBed GRCh38 released ENCFF159GGO bed narrowPeak conservative idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF180SDP, ENCFF419RSJ, ENCFF487ZXI, ENCFF894URM 34216 ENCODE Processing Pipeline 7a56281c20c4cf772d4203f3d826b145 https://www.encodeproject.org/files/ENCFF159GGO/@@download/ENCFF159GGO.bed.gz GRCh38 released ENCFF061LKU bigBed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF180SDP 11293038 ENCODE Processing Pipeline ff3c754a2923506e545db9aa79850a90 https://www.encodeproject.org/files/ENCFF061LKU/@@download/ENCFF061LKU.bigBed GRCh38 released ENCFF487ZXI bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF003ETE, ENCFF191XYH, ENCFF746SKT, ENCFF763DOU 7283760 ENCODE Processing Pipeline fc37dc69cdafb2509c28a1d4da34a33c https://www.encodeproject.org/files/ENCFF487ZXI/@@download/ENCFF487ZXI.bed.gz GRCh38 released ENCFF894URM bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF003ETE, ENCFF191XYH, ENCFF746SKT 6905092 ENCODE Processing Pipeline afc4fa3cd93f2bbccc5d98ddfe7f9dec https://www.encodeproject.org/files/ENCFF894URM/@@download/ENCFF894URM.bed.gz GRCh38 released ENCFF319GTG bigBed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF894URM 11144721 ENCODE Processing Pipeline f5b7531ccf541e091a17a1ef9ba41d26 https://www.encodeproject.org/files/ENCFF319GTG/@@download/ENCFF319GTG.bigBed GRCh38 released ENCFF046BRP bed narrowPeak optimal idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF180SDP, ENCFF419RSJ, ENCFF487ZXI, ENCFF894URM 57571 ENCODE Processing Pipeline c1ab10e2bca8a6730e118ad7373a4e53 https://www.encodeproject.org/files/ENCFF046BRP/@@download/ENCFF046BRP.bed.gz GRCh38 released ENCFF811SPA bigBed narrowPeak conservative idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF159GGO 135879 ENCODE Processing Pipeline b32c0a264e685f845ac22235d2e8fbb6 https://www.encodeproject.org/files/ENCFF811SPA/@@download/ENCFF811SPA.bigBed GRCh38 released ENCFF506ZZH bigBed narrowPeak optimal idr thresholded peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF046BRP 182296 ENCODE Processing Pipeline 5b4f0f14416bbf34a2881f04d422ffbc https://www.encodeproject.org/files/ENCFF506ZZH/@@download/ENCFF506ZZH.bigBed GRCh38 released ENCFF000YVJ bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 1 605218283 Michael Snyder, Stanford addadd32a8951c750e714cb1d40d763b https://www.encodeproject.org/files/ENCFF000YVJ/@@download/ENCFF000YVJ.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YVK bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 1 646964343 Michael Snyder, Stanford 13f480df68151362cf32b7c939432202 https://www.encodeproject.org/files/ENCFF000YVK/@@download/ENCFF000YVK.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YVL bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VOC 3343510 Michael Snyder, Stanford aefb5b25d02c77a3740fd3ffcffbc6ca https://www.encodeproject.org/files/ENCFF000YVL/@@download/ENCFF000YVL.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YVM fastq reads ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1182736223 Michael Snyder, Stanford f89d9080740f5a1332e0a6ab057f3156 https://www.encodeproject.org/files/ENCFF000YVM/@@download/ENCFF000YVM.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YVO fastq reads ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1197045033 Michael Snyder, Stanford 81f0b5314bd937de120c845dd3d04c1a https://www.encodeproject.org/files/ENCFF000YVO/@@download/ENCFF000YVO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YVQ bigWig signal ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 437078843 Michael Snyder, Stanford 3d0cdd83b8e548279cf55542a900cbe7 https://www.encodeproject.org/files/ENCFF000YVQ/@@download/ENCFF000YVQ.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VOC bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1381827 Michael Snyder, Stanford 68ae1503a36a8e4e49d5435a7ef819da https://www.encodeproject.org/files/ENCFF001VOC/@@download/ENCFF001VOC.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CXL bed narrowPeak optimal idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 560754 ENCODE Consortium Analysis Working Group ec1717748eb321c02c89b809da728501 https://www.encodeproject.org/files/ENCFF002CXL/@@download/ENCFF002CXL.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF204YXM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CXL 1282719 ENCODE Consortium af4e70875e1913b5cc4d2ccb089e7ccf https://www.encodeproject.org/files/ENCFF204YXM/@@download/ENCFF204YXM.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF883XER bam unfiltered alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YVM, ENCFF643CGH 1318883964 ENCODE Processing Pipeline 928d449ff0c41f217a743c60f619faff https://www.encodeproject.org/files/ENCFF883XER/@@download/ENCFF883XER.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF566CML bam unfiltered alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YVO, ENCFF643CGH 1340299504 ENCODE Processing Pipeline 0e30b6861bd62cc38a79daafdc4db5ec https://www.encodeproject.org/files/ENCFF566CML/@@download/ENCFF566CML.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF982AFE bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YVM, ENCFF643CGH 865139476 ENCODE Processing Pipeline b92010297ee9df3e31a12bfd1e32d50c https://www.encodeproject.org/files/ENCFF982AFE/@@download/ENCFF982AFE.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF200PYZ bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YVO, ENCFF643CGH 916814166 ENCODE Processing Pipeline 495eb0445f00c3aa9ff6c92ada8f2ad8 https://www.encodeproject.org/files/ENCFF200PYZ/@@download/ENCFF200PYZ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF154BYS bam unfiltered alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YVM, ENCFF807MUK 1313567026 ENCODE Processing Pipeline f71941e05921b6abb0e63ec3713c3cee https://www.encodeproject.org/files/ENCFF154BYS/@@download/ENCFF154BYS.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF703ULA bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YVM, ENCFF807MUK 865762620 ENCODE Processing Pipeline 2856548563ffe53572132e104a6157f2 https://www.encodeproject.org/files/ENCFF703ULA/@@download/ENCFF703ULA.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF485ZPK bam unfiltered alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YVO, ENCFF807MUK 1335275178 ENCODE Processing Pipeline 024e6ac2926ab96f41b56877f32d6ddd https://www.encodeproject.org/files/ENCFF485ZPK/@@download/ENCFF485ZPK.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF366ROL bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YVO, ENCFF807MUK 917425721 ENCODE Processing Pipeline 70a2ce4bb716921a10e2ff2f29b96abc https://www.encodeproject.org/files/ENCFF366ROL/@@download/ENCFF366ROL.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF899LDN bigWig signal p-value ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF982AFE 509242817 ENCODE Processing Pipeline 6ca76c163c9db07c3240ef4987a5e93e https://www.encodeproject.org/files/ENCFF899LDN/@@download/ENCFF899LDN.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF191VLU bigWig signal p-value ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF200PYZ 485528264 ENCODE Processing Pipeline 313093201ab20f4e6d56f542c478ca0b https://www.encodeproject.org/files/ENCFF191VLU/@@download/ENCFF191VLU.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF363QJI bigWig signal p-value ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF200PYZ, ENCFF982AFE 538313516 ENCODE Processing Pipeline 5ecd7b8d3a58ebd5d27325cc5a4c602f https://www.encodeproject.org/files/ENCFF363QJI/@@download/ENCFF363QJI.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF856VEE bigWig fold change over control ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF200PYZ 442334159 ENCODE Processing Pipeline 424d5a17aac67c19134bf6d2a8a6c1ca https://www.encodeproject.org/files/ENCFF856VEE/@@download/ENCFF856VEE.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF080ODW bigWig fold change over control ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF982AFE 427289040 ENCODE Processing Pipeline 2ae5d6fb077b6201c3c30cec99014b1b https://www.encodeproject.org/files/ENCFF080ODW/@@download/ENCFF080ODW.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF907QZG bigWig fold change over control ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF200PYZ, ENCFF982AFE 725660239 ENCODE Processing Pipeline 56955c52d8bdd63d1f6c09cd5df3fda6 https://www.encodeproject.org/files/ENCFF907QZG/@@download/ENCFF907QZG.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF514SHW bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF982AFE 5253849 ENCODE Processing Pipeline fc4af747c1250ed6b3804674de683ec0 https://www.encodeproject.org/files/ENCFF514SHW/@@download/ENCFF514SHW.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF765ZUN bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF200PYZ 5325781 ENCODE Processing Pipeline 341de4fe2c24b5814c5309b5e306bd39 https://www.encodeproject.org/files/ENCFF765ZUN/@@download/ENCFF765ZUN.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF020TYZ bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF200PYZ, ENCFF982AFE 4291534 ENCODE Processing Pipeline 70b534cb6cc0392779a70100627fa218 https://www.encodeproject.org/files/ENCFF020TYZ/@@download/ENCFF020TYZ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF843TBE bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF514SHW 11081858 ENCODE Processing Pipeline af4a010af41eca5dc453b239ba68d00a https://www.encodeproject.org/files/ENCFF843TBE/@@download/ENCFF843TBE.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF806FSL bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF765ZUN 11109018 ENCODE Processing Pipeline ca590d3b315cff9b37e51a5ba41cd82f https://www.encodeproject.org/files/ENCFF806FSL/@@download/ENCFF806FSL.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF603OSG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF433PKW 902300 ENCODE Processing Pipeline 78e8bc834b8ad6f3930af083713aef28 https://www.encodeproject.org/files/ENCFF603OSG/@@download/ENCFF603OSG.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF860OBO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF755HCK 1038160 ENCODE Processing Pipeline 76de2b0266e673e48763e87451852ef7 https://www.encodeproject.org/files/ENCFF860OBO/@@download/ENCFF860OBO.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF746AUS bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF020TYZ 9188126 ENCODE Processing Pipeline 0d47a4dfd4e6369691c2f266082559fc https://www.encodeproject.org/files/ENCFF746AUS/@@download/ENCFF746AUS.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF433PKW bed narrowPeak conservative idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF020TYZ, ENCFF419RSJ, ENCFF514SHW, ENCFF765ZUN 422586 ENCODE Processing Pipeline 1008d69a69a54bb582da6aab516adb4a https://www.encodeproject.org/files/ENCFF433PKW/@@download/ENCFF433PKW.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF755HCK bed narrowPeak optimal idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF020TYZ, ENCFF419RSJ, ENCFF514SHW, ENCFF765ZUN 507309 ENCODE Processing Pipeline 0f3d11026ed80414d813c56b0c574482 https://www.encodeproject.org/files/ENCFF755HCK/@@download/ENCFF755HCK.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF328UVF bigWig signal p-value ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF366ROL, ENCFF703ULA, ENCFF710NTS 538791702 ENCODE Processing Pipeline f0fecc44a437b339bad95c3b9058bf90 https://www.encodeproject.org/files/ENCFF328UVF/@@download/ENCFF328UVF.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF152DJG bigWig fold change over control ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF366ROL, ENCFF703ULA, ENCFF710NTS 723001654 ENCODE Processing Pipeline 12dd8e9398ee78cca51e576e7138170a https://www.encodeproject.org/files/ENCFF152DJG/@@download/ENCFF152DJG.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF140XPK bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703ULA, ENCFF710NTS 5254759 ENCODE Processing Pipeline 5da407a55ac8e67282768fa2dafa3448 https://www.encodeproject.org/files/ENCFF140XPK/@@download/ENCFF140XPK.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF821GNB bed narrowPeak conservative idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF140XPK, ENCFF379CMJ, ENCFF721DKV 421633 ENCODE Processing Pipeline 9addd43753ce0e434be8ead7742e5ba9 https://www.encodeproject.org/files/ENCFF821GNB/@@download/ENCFF821GNB.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF379CMJ bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF366ROL, ENCFF703ULA, ENCFF710NTS 4292138 ENCODE Processing Pipeline 79c4e391ee34962115e8162c8b45c989 https://www.encodeproject.org/files/ENCFF379CMJ/@@download/ENCFF379CMJ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF721DKV bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF366ROL, ENCFF710NTS 5331822 ENCODE Processing Pipeline 54d16af622c98713d139299498e6adb2 https://www.encodeproject.org/files/ENCFF721DKV/@@download/ENCFF721DKV.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF691QLK bigWig fold change over control ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703ULA, ENCFF710NTS 426007592 ENCODE Processing Pipeline b1ead4f694adbdb7c85d224ef92ffdaf https://www.encodeproject.org/files/ENCFF691QLK/@@download/ENCFF691QLK.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF357GGL bigWig fold change over control ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF366ROL, ENCFF710NTS 439247961 ENCODE Processing Pipeline a5102ebad6ff410f179787ce0776d362 https://www.encodeproject.org/files/ENCFF357GGL/@@download/ENCFF357GGL.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF549TYR bed narrowPeak optimal idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF140XPK, ENCFF379CMJ, ENCFF721DKV 499007 ENCODE Processing Pipeline 5c12903e8565056220d8fa3f42c54529 https://www.encodeproject.org/files/ENCFF549TYR/@@download/ENCFF549TYR.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF533LGP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF549TYR 1025919 ENCODE Processing Pipeline 6bd334bfc5d6dda50cb418ffacaae90e https://www.encodeproject.org/files/ENCFF533LGP/@@download/ENCFF533LGP.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF036LXF bigWig signal p-value ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703ULA, ENCFF710NTS 468099946 ENCODE Processing Pipeline db218e76c042d728ccb4ec2793f82245 https://www.encodeproject.org/files/ENCFF036LXF/@@download/ENCFF036LXF.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF823OCS bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF140XPK 11073425 ENCODE Processing Pipeline 63e67e25791daa045ecc0594c47a1edb https://www.encodeproject.org/files/ENCFF823OCS/@@download/ENCFF823OCS.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF388BHA bigWig signal p-value ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF366ROL, ENCFF710NTS 486366235 ENCODE Processing Pipeline 22fd1f38fe5f2d9df3765461fe51575f https://www.encodeproject.org/files/ENCFF388BHA/@@download/ENCFF388BHA.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF902GOP bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF379CMJ 9185491 ENCODE Processing Pipeline 16f23858b1164c9a45572f3bd835fb17 https://www.encodeproject.org/files/ENCFF902GOP/@@download/ENCFF902GOP.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF715SBF bigBed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF721DKV 11108767 ENCODE Processing Pipeline 4d89666e2b9435e6475909f4a1c15544 https://www.encodeproject.org/files/ENCFF715SBF/@@download/ENCFF715SBF.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF812KSD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF821GNB 900427 ENCODE Processing Pipeline 1881a085fc6946d4e9b58cbaef67b980 https://www.encodeproject.org/files/ENCFF812KSD/@@download/ENCFF812KSD.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF539JMO fastq reads ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF981GJX 2878158451 Michael Snyder, Stanford 3a9b4651a56fc2747771cf54df7fe1a5 SRA:SRR6214032 https://www.encodeproject.org/files/ENCFF539JMO/@@download/ENCFF539JMO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF981GJX fastq reads ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF539JMO 2947669682 Michael Snyder, Stanford a9c193ce4654140f18e7f24d993dbccf SRA:SRR6214032 https://www.encodeproject.org/files/ENCFF981GJX/@@download/ENCFF981GJX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF549IKB fastq reads ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF659PCT 2819046813 Michael Snyder, Stanford e56dd3114b0ff364ca2b4ed77b33ff5f SRA:SRR6214033 https://www.encodeproject.org/files/ENCFF549IKB/@@download/ENCFF549IKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF659PCT fastq reads ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF549IKB 2890412599 Michael Snyder, Stanford 1bd3ac9f378f0a89dee0c11dc375f8af SRA:SRR6214033 https://www.encodeproject.org/files/ENCFF659PCT/@@download/ENCFF659PCT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF094DVW bam unfiltered alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF549IKB, ENCFF659PCT, ENCFF807MUK 5722231055 ENCODE Processing Pipeline 76a515bf9daead4ccdeb2880b8580b78 https://www.encodeproject.org/files/ENCFF094DVW/@@download/ENCFF094DVW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF603XMH bam unfiltered alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF539JMO, ENCFF807MUK, ENCFF981GJX 5862726389 ENCODE Processing Pipeline ac6af48b0f90d7f25a027f60dc52a5d4 https://www.encodeproject.org/files/ENCFF603XMH/@@download/ENCFF603XMH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF094HJZ bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF539JMO, ENCFF807MUK, ENCFF981GJX 5163345211 ENCODE Processing Pipeline 1b96da0a7b0b1d8c45313e4717367908 https://www.encodeproject.org/files/ENCFF094HJZ/@@download/ENCFF094HJZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF363LYG bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF549IKB, ENCFF659PCT, ENCFF807MUK 5036563681 ENCODE Processing Pipeline b3f0d41dd913df5bb21b6622b5c09d46 https://www.encodeproject.org/files/ENCFF363LYG/@@download/ENCFF363LYG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF678RQY bam unfiltered alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF549IKB, ENCFF643CGH, ENCFF659PCT 5729744979 ENCODE Processing Pipeline c84cb4ec601ad9106031c26a72f081d5 https://www.encodeproject.org/files/ENCFF678RQY/@@download/ENCFF678RQY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF645WYX bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF549IKB, ENCFF643CGH, ENCFF659PCT 5040284283 ENCODE Processing Pipeline ee222ca55094eddfc8243772a92b6b22 https://www.encodeproject.org/files/ENCFF645WYX/@@download/ENCFF645WYX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF892OHI bam unfiltered alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF539JMO, ENCFF643CGH, ENCFF981GJX 5870525900 ENCODE Processing Pipeline c248ba61a3313ef691a40d5ab174c21f https://www.encodeproject.org/files/ENCFF892OHI/@@download/ENCFF892OHI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF558PHY bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF539JMO, ENCFF643CGH, ENCFF981GJX 5167121946 ENCODE Processing Pipeline c211b12310f1d2e1c452d30ab2c5ac68 https://www.encodeproject.org/files/ENCFF558PHY/@@download/ENCFF558PHY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF978XMM bigWig signal p-value ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF558PHY 1184160623 ENCODE Processing Pipeline b0b9954003872363008f49084e0af6be https://www.encodeproject.org/files/ENCFF978XMM/@@download/ENCFF978XMM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF537UBX bigWig signal p-value ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF094HJZ 1422123687 ENCODE Processing Pipeline 0152e989d8604e112d2de66f0def11e4 https://www.encodeproject.org/files/ENCFF537UBX/@@download/ENCFF537UBX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF188AHL bigWig signal p-value ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF363LYG 1373326572 ENCODE Processing Pipeline 728a2df7d2798948c2768daaa0f8455d https://www.encodeproject.org/files/ENCFF188AHL/@@download/ENCFF188AHL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF621VWW bigWig signal p-value ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF645WYX 1476552438 ENCODE Processing Pipeline 191e9eb1ea6a926b7327ea24b9176a0c https://www.encodeproject.org/files/ENCFF621VWW/@@download/ENCFF621VWW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF657RQB bigWig signal p-value ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF094HJZ, ENCFF363LYG 1953250333 ENCODE Processing Pipeline da6e66b8f14260661f3b06d4ab747af4 https://www.encodeproject.org/files/ENCFF657RQB/@@download/ENCFF657RQB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF935KSO bigWig signal p-value ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF558PHY, ENCFF645WYX 1954701650 ENCODE Processing Pipeline c0e7d631dc65d1b8ad1faf145add1766 https://www.encodeproject.org/files/ENCFF935KSO/@@download/ENCFF935KSO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF881IDP bigWig fold change over control ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF558PHY 1439366754 ENCODE Processing Pipeline 135e1b4788f91be1edc6a63f81954051 https://www.encodeproject.org/files/ENCFF881IDP/@@download/ENCFF881IDP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF425GVM bigWig fold change over control ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF094HJZ 1437191696 ENCODE Processing Pipeline aaf8c3ae3d994c8e225e63eb3b39ff96 https://www.encodeproject.org/files/ENCFF425GVM/@@download/ENCFF425GVM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF378QDH bigWig fold change over control ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF363LYG 1432843365 ENCODE Processing Pipeline cd35ade913f8f3b2432c4958ef39cc54 https://www.encodeproject.org/files/ENCFF378QDH/@@download/ENCFF378QDH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF171GPY bigWig fold change over control ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF645WYX 1428490813 ENCODE Processing Pipeline 7861b7e255e82b6c43580756d7ef42a7 https://www.encodeproject.org/files/ENCFF171GPY/@@download/ENCFF171GPY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF586SIM bigWig fold change over control ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF094HJZ, ENCFF363LYG 2029860708 ENCODE Processing Pipeline d07f7b4b94f8f644ac57726f2bf24ce0 https://www.encodeproject.org/files/ENCFF586SIM/@@download/ENCFF586SIM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF324MHP bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF094HJZ 7121133 ENCODE Processing Pipeline e509404f3266c0a6f93525f65f6a0644 https://www.encodeproject.org/files/ENCFF324MHP/@@download/ENCFF324MHP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF836MBX bigWig fold change over control ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF558PHY, ENCFF645WYX 2033885634 ENCODE Processing Pipeline e1ff16776f8d6fe336037452828c28bc https://www.encodeproject.org/files/ENCFF836MBX/@@download/ENCFF836MBX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF565YGS bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF094HJZ, ENCFF363LYG 7288413 ENCODE Processing Pipeline 34b68e4cb5a5080f5e0ef7b318219409 https://www.encodeproject.org/files/ENCFF565YGS/@@download/ENCFF565YGS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF952TOJ bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF363LYG 7086320 ENCODE Processing Pipeline 3b06e12ab45d3f5d8fe94f1ff32a01f7 https://www.encodeproject.org/files/ENCFF952TOJ/@@download/ENCFF952TOJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF500ZOR bigBed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF324MHP 13460912 ENCODE Processing Pipeline 9841e9952fc64e734b7d279e951a5d3b https://www.encodeproject.org/files/ENCFF500ZOR/@@download/ENCFF500ZOR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF922YYT bigBed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF565YGS 13440783 ENCODE Processing Pipeline 34862b17e01834fa757dda840a1d86b7 https://www.encodeproject.org/files/ENCFF922YYT/@@download/ENCFF922YYT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF855BZW bigBed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF952TOJ 13445492 ENCODE Processing Pipeline 9c70a161eabd153e1d52b3cbb0018778 https://www.encodeproject.org/files/ENCFF855BZW/@@download/ENCFF855BZW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF890VXS bed narrowPeak optimal idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF324MHP, ENCFF565YGS, ENCFF952TOJ 1140837 ENCODE Processing Pipeline 581c4a4b69788a1d9ab3fb2e6cb6ccca https://www.encodeproject.org/files/ENCFF890VXS/@@download/ENCFF890VXS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF092QTN bed narrowPeak conservative idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF324MHP, ENCFF565YGS, ENCFF952TOJ 1090715 ENCODE Processing Pipeline fdf764d3a655df9d89857ebf6f8a8b2d https://www.encodeproject.org/files/ENCFF092QTN/@@download/ENCFF092QTN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF713QHO bigBed narrowPeak conservative idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF092QTN 2409353 ENCODE Processing Pipeline ad572ac291961ecf37ebbf916c26903c https://www.encodeproject.org/files/ENCFF713QHO/@@download/ENCFF713QHO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF296MJU bigBed narrowPeak optimal idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF890VXS 2501194 ENCODE Processing Pipeline 51f3e5dfa787dcf8369205b9a7691970 https://www.encodeproject.org/files/ENCFF296MJU/@@download/ENCFF296MJU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF271VMN bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF558PHY 7005750 ENCODE Processing Pipeline 8f9fec71d08536edef1af0d6b8af5bda https://www.encodeproject.org/files/ENCFF271VMN/@@download/ENCFF271VMN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF523ZBU bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF645WYX 7012033 ENCODE Processing Pipeline 23cc63ab74ab336876d8b9ab533afac3 https://www.encodeproject.org/files/ENCFF523ZBU/@@download/ENCFF523ZBU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF418UDL bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF558PHY, ENCFF645WYX 7188504 ENCODE Processing Pipeline a2753b862b49f08678ab4abd0071aee2 https://www.encodeproject.org/files/ENCFF418UDL/@@download/ENCFF418UDL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF175QQP bigBed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF271VMN 13336420 ENCODE Processing Pipeline dfb245349ec365548d582197fd260cc4 https://www.encodeproject.org/files/ENCFF175QQP/@@download/ENCFF175QQP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF583IZA bigBed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF418UDL 13328333 ENCODE Processing Pipeline f3b336cf7be350a08b847ae81edb14d9 https://www.encodeproject.org/files/ENCFF583IZA/@@download/ENCFF583IZA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF777BUS bigBed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF523ZBU 13366291 ENCODE Processing Pipeline 6f7e65c9a74a56caadee0348747e9384 https://www.encodeproject.org/files/ENCFF777BUS/@@download/ENCFF777BUS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF136DLW bed narrowPeak conservative idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF271VMN, ENCFF418UDL, ENCFF419RSJ, ENCFF523ZBU 1058141 ENCODE Processing Pipeline c718e1f0d44bd30e447600665f4f8000 https://www.encodeproject.org/files/ENCFF136DLW/@@download/ENCFF136DLW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF187CEY bed narrowPeak optimal idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF271VMN, ENCFF418UDL, ENCFF419RSJ, ENCFF523ZBU 1110991 ENCODE Processing Pipeline 1f3569838a9e64b375c2dccb5c125c90 https://www.encodeproject.org/files/ENCFF187CEY/@@download/ENCFF187CEY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF738DEV bigBed narrowPeak optimal idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF187CEY 1947035 ENCODE Processing Pipeline cfe0312723e9e7b68b09bf76d6c0949e https://www.encodeproject.org/files/ENCFF738DEV/@@download/ENCFF738DEV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF236HJC bigBed narrowPeak conservative idr thresholded peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF136DLW 1869412 ENCODE Processing Pipeline 369f1f684ff91d31adedf3733323d023 https://www.encodeproject.org/files/ENCFF236HJC/@@download/ENCFF236HJC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF257UIV fastq reads ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 1 100 paired-ended 1 ENCFF042QKO 2783116579 Michael Snyder, Stanford 5fb2512e16a14d192f4521c9fc89abfe SRA:SRR5111150 https://www.encodeproject.org/files/ENCFF257UIV/@@download/ENCFF257UIV.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF610FSQ fastq reads ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 1 100 paired-ended 1 ENCFF064WKY 3748445091 Michael Snyder, Stanford a86f16dc8b0ec413441488e5a0785913 SRA:SRR5111149 https://www.encodeproject.org/files/ENCFF610FSQ/@@download/ENCFF610FSQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF064WKY fastq reads ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 1 100 paired-ended 2 ENCFF610FSQ 4023817874 Michael Snyder, Stanford aff85c32250fbc7c1faf5ec9b2ceca99 SRA:SRR5111149 https://www.encodeproject.org/files/ENCFF064WKY/@@download/ENCFF064WKY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF042QKO fastq reads ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 1 100 paired-ended 2 ENCFF257UIV 3071304539 Michael Snyder, Stanford bd9c6bd225a3841546bd0f07507a4c94 SRA:SRR5111150 https://www.encodeproject.org/files/ENCFF042QKO/@@download/ENCFF042QKO.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF741XHV bam unfiltered alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 100 ENCFF042QKO, ENCFF257UIV, ENCFF807MUK 5479563486 ENCODE Processing Pipeline 51a06f814480f6394bad0b2e447e3eea https://www.encodeproject.org/files/ENCFF741XHV/@@download/ENCFF741XHV.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF716BSA bam unfiltered alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 100 ENCFF042QKO, ENCFF257UIV, ENCFF643CGH 5485629062 ENCODE Processing Pipeline f2d473a6b85454d3dc77d25d7a7b006a https://www.encodeproject.org/files/ENCFF716BSA/@@download/ENCFF716BSA.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF802BAF bam unfiltered alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 100 ENCFF064WKY, ENCFF610FSQ, ENCFF807MUK 7281613715 ENCODE Processing Pipeline 88566b177a5982b2a02c57eeb0faba6f https://www.encodeproject.org/files/ENCFF802BAF/@@download/ENCFF802BAF.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF747VXT bam unfiltered alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 100 ENCFF064WKY, ENCFF610FSQ, ENCFF643CGH 7291868278 ENCODE Processing Pipeline 63bb90c1fb2fbc411a203e6909fb5186 https://www.encodeproject.org/files/ENCFF747VXT/@@download/ENCFF747VXT.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF494NSZ bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 100 ENCFF042QKO, ENCFF257UIV, ENCFF807MUK 3695624014 ENCODE Processing Pipeline e5c11b2d7a99d9623da722c267be017e https://www.encodeproject.org/files/ENCFF494NSZ/@@download/ENCFF494NSZ.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF423MBY bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 100 ENCFF042QKO, ENCFF257UIV, ENCFF643CGH 3700198891 ENCODE Processing Pipeline 059c7472b4cfa96ff045e62777b7c1d6 https://www.encodeproject.org/files/ENCFF423MBY/@@download/ENCFF423MBY.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF327GHK bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 100 ENCFF064WKY, ENCFF610FSQ, ENCFF807MUK 5073997520 ENCODE Processing Pipeline 551b3c534f03acbb93affb004a04b0af https://www.encodeproject.org/files/ENCFF327GHK/@@download/ENCFF327GHK.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF307UCL bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 100 ENCFF064WKY, ENCFF610FSQ, ENCFF643CGH 5080046310 ENCODE Processing Pipeline 6c4e774a2df0f5c057afc232d8d421e6 https://www.encodeproject.org/files/ENCFF307UCL/@@download/ENCFF307UCL.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF139BUY bigWig signal p-value ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF494NSZ, ENCFF834TUP 1310368850 ENCODE Processing Pipeline 7d314adeeb051f10df1309a3078efeed https://www.encodeproject.org/files/ENCFF139BUY/@@download/ENCFF139BUY.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF284QQW bigWig signal p-value ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF160VXC, ENCFF327GHK, ENCFF834TUP 1811011019 ENCODE Processing Pipeline 8048012b82c7d6f27a00eb0e8f254188 https://www.encodeproject.org/files/ENCFF284QQW/@@download/ENCFF284QQW.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF887ZLC bigWig signal p-value ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF160VXC, ENCFF327GHK, ENCFF494NSZ, ENCFF834TUP 1976082108 ENCODE Processing Pipeline dc836784440b31a3914804e8823433a2 https://www.encodeproject.org/files/ENCFF887ZLC/@@download/ENCFF887ZLC.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF999PEA bigWig fold change over control ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF160VXC, ENCFF327GHK, ENCFF834TUP 2015707894 ENCODE Processing Pipeline 64cfbc3fccf8c5c018ec18b2045b0992 https://www.encodeproject.org/files/ENCFF999PEA/@@download/ENCFF999PEA.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF847HSI bigWig fold change over control ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF494NSZ, ENCFF834TUP 1326117153 ENCODE Processing Pipeline b0374a5272c69a49c63f3c684900ca72 https://www.encodeproject.org/files/ENCFF847HSI/@@download/ENCFF847HSI.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF684JZK bigWig fold change over control ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF160VXC, ENCFF327GHK, ENCFF494NSZ, ENCFF834TUP 2439649766 ENCODE Processing Pipeline 1716b22a26713eb2d8d36aeae0c22de0 https://www.encodeproject.org/files/ENCFF684JZK/@@download/ENCFF684JZK.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF285LKH bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF160VXC, ENCFF327GHK, ENCFF834TUP 6837520 ENCODE Processing Pipeline 79ea0c0bf9dea9f99781d0a485899deb https://www.encodeproject.org/files/ENCFF285LKH/@@download/ENCFF285LKH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF549VOY bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF494NSZ, ENCFF834TUP 6317672 ENCODE Processing Pipeline 509ed1052051da43fe4fb739e335d00f https://www.encodeproject.org/files/ENCFF549VOY/@@download/ENCFF549VOY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF407JTS bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF160VXC, ENCFF327GHK, ENCFF494NSZ, ENCFF834TUP 7223483 ENCODE Processing Pipeline cc3655f625f6cb14c1164987c83545d1 https://www.encodeproject.org/files/ENCFF407JTS/@@download/ENCFF407JTS.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF594XPN bigBed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF549VOY 11242565 ENCODE Processing Pipeline be0f31a85f0f3b6ba4542216c3be055b https://www.encodeproject.org/files/ENCFF594XPN/@@download/ENCFF594XPN.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF244QWX bigBed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF285LKH 11152215 ENCODE Processing Pipeline 1f187143d7ada33fb222503cae794fbd https://www.encodeproject.org/files/ENCFF244QWX/@@download/ENCFF244QWX.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF092GNI bed narrowPeak conservative idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF001TDO, ENCFF285LKH, ENCFF407JTS, ENCFF549VOY 1006 ENCODE Processing Pipeline adedc8be7cf75f5bd62dd37894163ab4 https://www.encodeproject.org/files/ENCFF092GNI/@@download/ENCFF092GNI.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF533GEY bigBed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF407JTS 11220618 ENCODE Processing Pipeline 01a33a1fdd93c3a5f6fe807616af28a3 https://www.encodeproject.org/files/ENCFF533GEY/@@download/ENCFF533GEY.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF218DHF bigBed narrowPeak optimal idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF142CCN 75289 ENCODE Processing Pipeline d92061b2729e81b49719fcdd5cc26203 https://www.encodeproject.org/files/ENCFF218DHF/@@download/ENCFF218DHF.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF070WPA bigBed narrowPeak conservative idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF453EIT 76308 ENCODE Processing Pipeline 042d4ffbb87a79700793b261e29474c1 https://www.encodeproject.org/files/ENCFF070WPA/@@download/ENCFF070WPA.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF684MLP bed narrowPeak optimal idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF001TDO, ENCFF285LKH, ENCFF407JTS, ENCFF549VOY 2643 ENCODE Processing Pipeline 2044df5f64a51f66c629269a417138c3 https://www.encodeproject.org/files/ENCFF684MLP/@@download/ENCFF684MLP.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF912RZW bigWig signal p-value ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF423MBY, ENCFF712WXB 1219019900 ENCODE Processing Pipeline 3c6ea01e0a286b2897737f1750394914 https://www.encodeproject.org/files/ENCFF912RZW/@@download/ENCFF912RZW.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF590VTK bigWig signal p-value ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF307UCL, ENCFF712WXB, ENCFF790TAN 1680596147 ENCODE Processing Pipeline 5a5875bf1e98918fe2f176cd157bc0ca https://www.encodeproject.org/files/ENCFF590VTK/@@download/ENCFF590VTK.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF427XWJ bigWig signal p-value ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF307UCL, ENCFF423MBY, ENCFF712WXB, ENCFF790TAN 1900604174 ENCODE Processing Pipeline ec1bbcd14e832e9bd87584e2382d6b56 https://www.encodeproject.org/files/ENCFF427XWJ/@@download/ENCFF427XWJ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF156NAU bigWig fold change over control ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF307UCL, ENCFF712WXB, ENCFF790TAN 2018165363 ENCODE Processing Pipeline 8e66233a3c221445726b185b95c439b3 https://www.encodeproject.org/files/ENCFF156NAU/@@download/ENCFF156NAU.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF277XSH bigWig fold change over control ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF423MBY, ENCFF712WXB 1329820867 ENCODE Processing Pipeline 6bb13a189c68dd206b173ce7d1b59095 https://www.encodeproject.org/files/ENCFF277XSH/@@download/ENCFF277XSH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF954FLY bigWig fold change over control ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF307UCL, ENCFF423MBY, ENCFF712WXB, ENCFF790TAN 2454602849 ENCODE Processing Pipeline d56cf84a96895b4bd0d0875c6691d32b https://www.encodeproject.org/files/ENCFF954FLY/@@download/ENCFF954FLY.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF622EZH bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF423MBY, ENCFF712WXB 6057544 ENCODE Processing Pipeline c7a64bb30cabc10412bf2a5f236948c0 https://www.encodeproject.org/files/ENCFF622EZH/@@download/ENCFF622EZH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF058FSO bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF307UCL, ENCFF712WXB, ENCFF790TAN 6739760 ENCODE Processing Pipeline 9500af3d46dba2d519e16d15e3392506 https://www.encodeproject.org/files/ENCFF058FSO/@@download/ENCFF058FSO.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF398ETF bigBed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF058FSO 11172274 ENCODE Processing Pipeline 8425630cf356ddc22212df58295113ee https://www.encodeproject.org/files/ENCFF398ETF/@@download/ENCFF398ETF.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF767YBD bigBed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF622EZH 11256574 ENCODE Processing Pipeline fe1b855eb097d028d5df91bc17c6382b https://www.encodeproject.org/files/ENCFF767YBD/@@download/ENCFF767YBD.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF971AJH bigBed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF887WEF 11243905 ENCODE Processing Pipeline acbd18125e2c6f690eddd3e462a3ecff https://www.encodeproject.org/files/ENCFF971AJH/@@download/ENCFF971AJH.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF887WEF bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF307UCL, ENCFF423MBY, ENCFF712WXB, ENCFF790TAN 7191289 ENCODE Processing Pipeline b34e7cabe7360ee57d195e227a68c6f4 https://www.encodeproject.org/files/ENCFF887WEF/@@download/ENCFF887WEF.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF059THO bed narrowPeak conservative idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF058FSO, ENCFF419RSJ, ENCFF622EZH, ENCFF887WEF 1334 ENCODE Processing Pipeline 6dbbc2b69076d4d0501140a63d450f18 https://www.encodeproject.org/files/ENCFF059THO/@@download/ENCFF059THO.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF142WGZ bigBed narrowPeak conservative idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF059THO 31392 ENCODE Processing Pipeline 41989fc59fc14e8a51e96a3195467b32 https://www.encodeproject.org/files/ENCFF142WGZ/@@download/ENCFF142WGZ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF669VMK bigBed narrowPeak optimal idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF552EBC 35274 ENCODE Processing Pipeline bdaf66b18ca67157a637dba3510378d3 https://www.encodeproject.org/files/ENCFF669VMK/@@download/ENCFF669VMK.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF552EBC bed narrowPeak optimal idr thresholded peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF058FSO, ENCFF419RSJ, ENCFF622EZH, ENCFF887WEF 2809 ENCODE Processing Pipeline 436543136748f9d0edf5851f8ca91c2c https://www.encodeproject.org/files/ENCFF552EBC/@@download/ENCFF552EBC.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF654PBV bam unfiltered alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 36 ENCFF002EWO, ENCFF807MUK 1313279614 ENCODE Processing Pipeline 32e1b6aa99996e75850471c171b07ba6 https://www.encodeproject.org/files/ENCFF654PBV/@@download/ENCFF654PBV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF300WMV bam unfiltered alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 36 ENCFF002EWP, ENCFF807MUK 1110957074 ENCODE Processing Pipeline d72e7a13da3cd5c3080eecc3f68e6971 https://www.encodeproject.org/files/ENCFF300WMV/@@download/ENCFF300WMV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EWO fastq reads ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 1 36 single-ended 914624230 Michael Snyder, Stanford 2e5392acfa04cb5307325c6cdbbcdc21 SRA:SRR5111559 https://www.encodeproject.org/files/ENCFF002EWO/@@download/ENCFF002EWO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EWP fastq reads ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 1 36 single-ended 788351480 Michael Snyder, Stanford 0c81ea3a0bb9f5591c529ece24273c45 SRA:SRR5111558 https://www.encodeproject.org/files/ENCFF002EWP/@@download/ENCFF002EWP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF558LSV bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 36 ENCFF002EWP, ENCFF807MUK 742441469 ENCODE Processing Pipeline 128c1d68ff9da53fbb32ef7a85abdafc https://www.encodeproject.org/files/ENCFF558LSV/@@download/ENCFF558LSV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF193XPY bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 36 ENCFF002EWO, ENCFF807MUK 957621777 ENCODE Processing Pipeline 38bd003c8b0ac6f762e4f6741959950d https://www.encodeproject.org/files/ENCFF193XPY/@@download/ENCFF193XPY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF838COE bigWig signal p-value ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF193XPY, ENCFF335IPE 534226403 ENCODE Processing Pipeline acc5407e3d9df78f1ad3d79a911c91f9 https://www.encodeproject.org/files/ENCFF838COE/@@download/ENCFF838COE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF590SYN bigWig signal p-value ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF193XPY, ENCFF335IPE, ENCFF558LSV, ENCFF879OQC 1056598453 ENCODE Processing Pipeline 20047c7c816aefeebc885948591cac9d https://www.encodeproject.org/files/ENCFF590SYN/@@download/ENCFF590SYN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF247UON bigWig signal p-value ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF558LSV, ENCFF879OQC 509628911 ENCODE Processing Pipeline 134475c980c9cace500da68cb509c6c4 https://www.encodeproject.org/files/ENCFF247UON/@@download/ENCFF247UON.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF052RBK bigWig fold change over control ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF193XPY, ENCFF335IPE 507203378 ENCODE Processing Pipeline be5413c58506fea1b3d40e441f12d637 https://www.encodeproject.org/files/ENCFF052RBK/@@download/ENCFF052RBK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF578MWF bigWig fold change over control ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF558LSV, ENCFF879OQC 423964078 ENCODE Processing Pipeline bb685d92f2ad0bfcf134f474682e3bef https://www.encodeproject.org/files/ENCFF578MWF/@@download/ENCFF578MWF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF363DWX bigWig fold change over control ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF193XPY, ENCFF335IPE, ENCFF558LSV, ENCFF879OQC 1035399103 ENCODE Processing Pipeline ff89b07a7e2c102a411dfbaf0bdec3bf https://www.encodeproject.org/files/ENCFF363DWX/@@download/ENCFF363DWX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF009PGQ bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF193XPY, ENCFF335IPE 5075484 ENCODE Processing Pipeline f52779d780056f5dbc75289ced0e3718 https://www.encodeproject.org/files/ENCFF009PGQ/@@download/ENCFF009PGQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF107SGI bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF558LSV, ENCFF879OQC 4674325 ENCODE Processing Pipeline 418758f943c545f62ba0589e070eb71f https://www.encodeproject.org/files/ENCFF107SGI/@@download/ENCFF107SGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF341WWD bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF193XPY, ENCFF335IPE, ENCFF558LSV, ENCFF879OQC 6343952 ENCODE Processing Pipeline ab0ae4464d6adbbf3a01041b345c4d12 https://www.encodeproject.org/files/ENCFF341WWD/@@download/ENCFF341WWD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF233QOR bigBed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF009PGQ 11044412 ENCODE Processing Pipeline 80f8aafd3f2c4208c89b2c176d405be5 https://www.encodeproject.org/files/ENCFF233QOR/@@download/ENCFF233QOR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF234FNY bigBed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF107SGI 10946234 ENCODE Processing Pipeline f502939cb0b0616d24e69102b1bba888 https://www.encodeproject.org/files/ENCFF234FNY/@@download/ENCFF234FNY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF902EJV bigBed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF341WWD 11237274 ENCODE Processing Pipeline e3c1c17fd0aa552a71c2b6091aff77e6 https://www.encodeproject.org/files/ENCFF902EJV/@@download/ENCFF902EJV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF455NNI bam unfiltered alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 36 ENCFF002EWO, ENCFF643CGH 1318428232 ENCODE Processing Pipeline 627fc20eeeac13800d2e1df12e4db76f https://www.encodeproject.org/files/ENCFF455NNI/@@download/ENCFF455NNI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF328YTB bam unfiltered alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 36 ENCFF002EWP, ENCFF643CGH 1115746077 ENCODE Processing Pipeline b6cee24f70c67b0a622a77792abdb30d https://www.encodeproject.org/files/ENCFF328YTB/@@download/ENCFF328YTB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF986KSB bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 36 ENCFF002EWO, ENCFF643CGH 957001469 ENCODE Processing Pipeline 293ce2364699cd94930a89b7c618fbf6 https://www.encodeproject.org/files/ENCFF986KSB/@@download/ENCFF986KSB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF614RBF bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 36 ENCFF002EWP, ENCFF643CGH 741857199 ENCODE Processing Pipeline e311ed619537544f39062f1a3ea6b5ae https://www.encodeproject.org/files/ENCFF614RBF/@@download/ENCFF614RBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF708NMD bigWig signal p-value ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF156FED, ENCFF986KSB 498881183 ENCODE Processing Pipeline 0815b2d3c862908415a3a9d612df6a2e https://www.encodeproject.org/files/ENCFF708NMD/@@download/ENCFF708NMD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF251EGL bigWig signal p-value ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF577FNG, ENCFF614RBF 452851844 ENCODE Processing Pipeline 54163c176aeb9d2e70f4336dc0f57c8b https://www.encodeproject.org/files/ENCFF251EGL/@@download/ENCFF251EGL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF239QWU bigWig signal p-value ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF156FED, ENCFF577FNG, ENCFF614RBF, ENCFF986KSB 1115527092 ENCODE Processing Pipeline 31165fbed096b4fc14e8761d3354dd25 https://www.encodeproject.org/files/ENCFF239QWU/@@download/ENCFF239QWU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF065KGU bigWig fold change over control ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF156FED, ENCFF986KSB 508175214 ENCODE Processing Pipeline 1e88bdd459c5daed09ef3d02688a9115 https://www.encodeproject.org/files/ENCFF065KGU/@@download/ENCFF065KGU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF921KZU bigWig fold change over control ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF577FNG, ENCFF614RBF 428422235 ENCODE Processing Pipeline 62aafb4314c159bcab077fca90b26eec https://www.encodeproject.org/files/ENCFF921KZU/@@download/ENCFF921KZU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF394JNY bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF156FED, ENCFF986KSB 4730069 ENCODE Processing Pipeline 6b16f83ead995b6253574abddec44076 https://www.encodeproject.org/files/ENCFF394JNY/@@download/ENCFF394JNY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF417FWT bigWig fold change over control ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF156FED, ENCFF577FNG, ENCFF614RBF, ENCFF986KSB 1026079146 ENCODE Processing Pipeline 18447263a524bdaecc912d254b3d16d0 https://www.encodeproject.org/files/ENCFF417FWT/@@download/ENCFF417FWT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF732IJX bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF577FNG, ENCFF614RBF 4393904 ENCODE Processing Pipeline 063d7843577a6d9c248ca77bc53d7dda https://www.encodeproject.org/files/ENCFF732IJX/@@download/ENCFF732IJX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF241NZQ bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF156FED, ENCFF577FNG, ENCFF614RBF, ENCFF986KSB 6125622 ENCODE Processing Pipeline 78b6453885d6304b984e633d2aadffd9 https://www.encodeproject.org/files/ENCFF241NZQ/@@download/ENCFF241NZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF419GVG bigBed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF394JNY 10929557 ENCODE Processing Pipeline e460fc2da49bebd3d9e2b469035e7148 https://www.encodeproject.org/files/ENCFF419GVG/@@download/ENCFF419GVG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF107KUK bigBed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF732IJX 10720555 ENCODE Processing Pipeline 5c35621c97a2a44a73349a3b86c9edca https://www.encodeproject.org/files/ENCFF107KUK/@@download/ENCFF107KUK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF989LFF bigBed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF241NZQ 11223473 ENCODE Processing Pipeline 9348d0e9977f69f1b75839a74d1dac11 https://www.encodeproject.org/files/ENCFF989LFF/@@download/ENCFF989LFF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF687WTM bigBed narrowPeak optimal idr thresholded peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF856HYC 134175 ENCODE Processing Pipeline 4c2d950a6cb4dd85ccbe832ccbd0771c https://www.encodeproject.org/files/ENCFF687WTM/@@download/ENCFF687WTM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF856HYC bed narrowPeak optimal idr thresholded peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF241NZQ, ENCFF394JNY, ENCFF419RSJ, ENCFF732IJX 43926 ENCODE Processing Pipeline 9aeff388cdd3efa63a663f43f6a37be8 https://www.encodeproject.org/files/ENCFF856HYC/@@download/ENCFF856HYC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF319JHV bed narrowPeak conservative idr thresholded peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF009PGQ, ENCFF107SGI, ENCFF341WWD 39703 ENCODE Processing Pipeline bdce8eaebe3e5c93ab99ea062fbdb1e0 https://www.encodeproject.org/files/ENCFF319JHV/@@download/ENCFF319JHV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF276MCV bigBed narrowPeak conservative idr thresholded peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF319JHV 104483 ENCODE Processing Pipeline e1070614b7bfa7eb19a9bb1ab27dc737 https://www.encodeproject.org/files/ENCFF276MCV/@@download/ENCFF276MCV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF966MVC bed narrowPeak optimal idr thresholded peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF009PGQ, ENCFF107SGI, ENCFF341WWD 45116 ENCODE Processing Pipeline 1567fb3dc23551e8036656e989bcb56f https://www.encodeproject.org/files/ENCFF966MVC/@@download/ENCFF966MVC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF565PAP bigBed narrowPeak optimal idr thresholded peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF966MVC 135655 ENCODE Processing Pipeline ae2c8c249a350731d7fa279384e5beda https://www.encodeproject.org/files/ENCFF565PAP/@@download/ENCFF565PAP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF011PMD fastq reads ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF402LAV 2205732851 Michael Snyder, Stanford e28dd807b0cf2fe36dc53e47d76a80f5 SRA:SRR6212982 https://www.encodeproject.org/files/ENCFF011PMD/@@download/ENCFF011PMD.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF402LAV fastq reads ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF011PMD 2700441115 Michael Snyder, Stanford fb48b8cb8ea42f03f244c19cd94a5433 SRA:SRR6212982 https://www.encodeproject.org/files/ENCFF402LAV/@@download/ENCFF402LAV.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF192OJP fastq reads ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF291SHJ 4276249707 Michael Snyder, Stanford 6c6034da1f931eff25067b353e37daba SRA:SRR6212983 https://www.encodeproject.org/files/ENCFF192OJP/@@download/ENCFF192OJP.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF291SHJ fastq reads ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF192OJP 5151800040 Michael Snyder, Stanford 6f7c68ab9cba65771cfaafdb7eb4675d SRA:SRR6212983 https://www.encodeproject.org/files/ENCFF291SHJ/@@download/ENCFF291SHJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF882WFV bam unfiltered alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF011PMD, ENCFF402LAV, ENCFF807MUK 4942075742 ENCODE Processing Pipeline 1f230bbb59ebd3051c2289b92ad4b643 https://www.encodeproject.org/files/ENCFF882WFV/@@download/ENCFF882WFV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF308AZK bam unfiltered alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF011PMD, ENCFF402LAV, ENCFF643CGH 4948755258 ENCODE Processing Pipeline 10e99008598ebc771c09d2013032b140 https://www.encodeproject.org/files/ENCFF308AZK/@@download/ENCFF308AZK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF889PAN bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF192OJP, ENCFF291SHJ, ENCFF643CGH 7024856381 ENCODE Processing Pipeline bafe9e25291e3f2729341676941780af https://www.encodeproject.org/files/ENCFF889PAN/@@download/ENCFF889PAN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF457VMK bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF011PMD, ENCFF402LAV, ENCFF643CGH 3707502409 ENCODE Processing Pipeline f32bb7d18472267311b26a7f4d6ffb9a https://www.encodeproject.org/files/ENCFF457VMK/@@download/ENCFF457VMK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF532EAY bam unfiltered alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF192OJP, ENCFF291SHJ, ENCFF643CGH 8955573847 ENCODE Processing Pipeline 2df1a0cf0a59a138bf401c92b7b48be4 https://www.encodeproject.org/files/ENCFF532EAY/@@download/ENCFF532EAY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF088DEK bam unfiltered alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF192OJP, ENCFF291SHJ, ENCFF807MUK 8944159972 ENCODE Processing Pipeline 8313081e2f299d5f2a17a8b8a3812e68 https://www.encodeproject.org/files/ENCFF088DEK/@@download/ENCFF088DEK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF761PRG bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF011PMD, ENCFF402LAV, ENCFF807MUK 3705739740 ENCODE Processing Pipeline 9952f108b1df3a843485cd92c5a9d4f0 https://www.encodeproject.org/files/ENCFF761PRG/@@download/ENCFF761PRG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF288CMG bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF192OJP, ENCFF291SHJ, ENCFF807MUK 7020213110 ENCODE Processing Pipeline d295fdfe0e01f374d49b6ac7d7d22157 https://www.encodeproject.org/files/ENCFF288CMG/@@download/ENCFF288CMG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF540ZOP bigWig fold change over control ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 1627914780 ENCODE Processing Pipeline e05fdc76662d83afd894148dc29057fd https://www.encodeproject.org/files/ENCFF540ZOP/@@download/ENCFF540ZOP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF997ZIW bigWig signal p-value ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 1418254583 ENCODE Processing Pipeline 8153807b27932047adf47e743ae21fd3 https://www.encodeproject.org/files/ENCFF997ZIW/@@download/ENCFF997ZIW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF181PRY bigWig signal p-value ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF288CMG, ENCFF529BVI, ENCFF772FBN 2151073331 ENCODE Processing Pipeline e93d87a1c486733b3b19a2460b9e701f https://www.encodeproject.org/files/ENCFF181PRY/@@download/ENCFF181PRY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF101LHN bigWig signal p-value ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF288CMG, ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 2403890655 ENCODE Processing Pipeline 78b8da71ea532190c12987dd3b926500 https://www.encodeproject.org/files/ENCFF101LHN/@@download/ENCFF101LHN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF720KKS bigWig fold change over control ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF288CMG, ENCFF529BVI, ENCFF772FBN 2209394126 ENCODE Processing Pipeline ad694a38ec361c9ef112303ea64bb8db https://www.encodeproject.org/files/ENCFF720KKS/@@download/ENCFF720KKS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF419AYP bigWig fold change over control ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF288CMG, ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 2574775297 ENCODE Processing Pipeline ef763f4845805370aa56ea38a4f73cf2 https://www.encodeproject.org/files/ENCFF419AYP/@@download/ENCFF419AYP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF072ERX bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 6361672 ENCODE Processing Pipeline a91cd3e86e942cc12b8d9c2ee427e2a0 https://www.encodeproject.org/files/ENCFF072ERX/@@download/ENCFF072ERX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF028UBX bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF288CMG, ENCFF529BVI, ENCFF772FBN 6983689 ENCODE Processing Pipeline 11f1057a378148b3658bc79e67df2436 https://www.encodeproject.org/files/ENCFF028UBX/@@download/ENCFF028UBX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF461RDS bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF288CMG, ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 7343457 ENCODE Processing Pipeline ad4d1ba97bb064d57d53bc8beee84540 https://www.encodeproject.org/files/ENCFF461RDS/@@download/ENCFF461RDS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF506OOC bigBed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF072ERX 11458920 ENCODE Processing Pipeline 38cd52b2b1722dd578d34dc1a3ace346 https://www.encodeproject.org/files/ENCFF506OOC/@@download/ENCFF506OOC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF687HXS bigBed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF028UBX 11129200 ENCODE Processing Pipeline 9fa4480839613b0a344ff023778a94a3 https://www.encodeproject.org/files/ENCFF687HXS/@@download/ENCFF687HXS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF717FCO bigBed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF461RDS 11413995 ENCODE Processing Pipeline 01ba1ed17ed6c4cf675e01721460c866 https://www.encodeproject.org/files/ENCFF717FCO/@@download/ENCFF717FCO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF953NPJ bed narrowPeak conservative idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF028UBX, ENCFF072ERX, ENCFF461RDS 41172 ENCODE Processing Pipeline 88ad53daf2e1474a1478d00d7745b980 https://www.encodeproject.org/files/ENCFF953NPJ/@@download/ENCFF953NPJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF417SIR bigBed narrowPeak conservative idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF953NPJ 121683 ENCODE Processing Pipeline fa632e1acfffe06efbdc5eaab328d0f9 https://www.encodeproject.org/files/ENCFF417SIR/@@download/ENCFF417SIR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF333UCS bed narrowPeak optimal idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF028UBX, ENCFF072ERX, ENCFF461RDS 67533 ENCODE Processing Pipeline 9c024f81116a4662a6b618d79c6b16c0 https://www.encodeproject.org/files/ENCFF333UCS/@@download/ENCFF333UCS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF262WBO bigBed narrowPeak optimal idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF333UCS 159655 ENCODE Processing Pipeline 4b52f8c53efd60ae02af05f80fea237d https://www.encodeproject.org/files/ENCFF262WBO/@@download/ENCFF262WBO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF510XVU bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF457VMK, ENCFF705ARK, ENCFF802NAW, ENCFF889PAN 7343316 ENCODE Processing Pipeline 4775ba54c724740b465de31c7ea2fea3 https://www.encodeproject.org/files/ENCFF510XVU/@@download/ENCFF510XVU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF386PWH bigWig signal p-value ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF457VMK, ENCFF705ARK, ENCFF802NAW 1696120354 ENCODE Processing Pipeline 3aeaa0db6245fb8c15353d87b6000f83 https://www.encodeproject.org/files/ENCFF386PWH/@@download/ENCFF386PWH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF933DBT bigWig signal p-value ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF705ARK, ENCFF802NAW, ENCFF889PAN 2184085644 ENCODE Processing Pipeline 57012baac83199bbed5ee6d28617e43c https://www.encodeproject.org/files/ENCFF933DBT/@@download/ENCFF933DBT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF654JOW bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF705ARK, ENCFF802NAW, ENCFF889PAN 6990482 ENCODE Processing Pipeline 22b847353699acadbadd4fa4f47a7f43 https://www.encodeproject.org/files/ENCFF654JOW/@@download/ENCFF654JOW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF576UPS bigBed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF654JOW 11149481 ENCODE Processing Pipeline 63ae09cb0ad37c68fa83697a84d1ddad https://www.encodeproject.org/files/ENCFF576UPS/@@download/ENCFF576UPS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF939UTN bed narrowPeak optimal idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF266CZW, ENCFF419RSJ, ENCFF510XVU, ENCFF654JOW 70521 ENCODE Processing Pipeline 855f6c82a0e78eea941b837a8c45adbe https://www.encodeproject.org/files/ENCFF939UTN/@@download/ENCFF939UTN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF871MBS bigWig fold change over control ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF457VMK, ENCFF705ARK, ENCFF802NAW 1620718742 ENCODE Processing Pipeline 8c32a49f096563b2ac57b74a63afc70f https://www.encodeproject.org/files/ENCFF871MBS/@@download/ENCFF871MBS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF185RXH bigWig signal p-value ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF457VMK, ENCFF705ARK, ENCFF802NAW, ENCFF889PAN 2360923484 ENCODE Processing Pipeline c90c3dab8a82254e6451aaf9382a7ceb https://www.encodeproject.org/files/ENCFF185RXH/@@download/ENCFF185RXH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF078RMJ bigWig fold change over control ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF457VMK, ENCFF705ARK, ENCFF802NAW, ENCFF889PAN 2534075503 ENCODE Processing Pipeline a77f9ab71d2ae71fbb4fb9b60f18c5a3 https://www.encodeproject.org/files/ENCFF078RMJ/@@download/ENCFF078RMJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF399XGL bed narrowPeak conservative idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF266CZW, ENCFF419RSJ, ENCFF510XVU, ENCFF654JOW 41141 ENCODE Processing Pipeline 8ee266de7a198258033d26452f05ca98 https://www.encodeproject.org/files/ENCFF399XGL/@@download/ENCFF399XGL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF804RSM bigBed narrowPeak optimal idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF939UTN 164882 ENCODE Processing Pipeline 5f3d3722dca5d762f4c9fed4703f1255 https://www.encodeproject.org/files/ENCFF804RSM/@@download/ENCFF804RSM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF266CZW bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF457VMK, ENCFF705ARK, ENCFF802NAW 6362912 ENCODE Processing Pipeline ad4e735a56000f39231cdeb7f2207327 https://www.encodeproject.org/files/ENCFF266CZW/@@download/ENCFF266CZW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF544RWD bigBed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF510XVU 11425878 ENCODE Processing Pipeline a1bbc031a5d0f2b5aa782db5a732864c https://www.encodeproject.org/files/ENCFF544RWD/@@download/ENCFF544RWD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF101KSI bigBed narrowPeak conservative idr thresholded peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF399XGL 122840 ENCODE Processing Pipeline 725da89c514169842342115111d41442 https://www.encodeproject.org/files/ENCFF101KSI/@@download/ENCFF101KSI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF083VUE bigWig fold change over control ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF705ARK, ENCFF802NAW, ENCFF889PAN 2204401416 ENCODE Processing Pipeline 67ca4037cb90fdc5f0fe1bb39dc8577e https://www.encodeproject.org/files/ENCFF083VUE/@@download/ENCFF083VUE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF852VJS bigBed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF266CZW 11477919 ENCODE Processing Pipeline 5a5b652c82c1e5b3472d65ca88f0d51d https://www.encodeproject.org/files/ENCFF852VJS/@@download/ENCFF852VJS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF943GTQ fastq reads ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF732UEM 3827345273 Michael Snyder, Stanford e45a22e480dc7a74275a17e4a7814d38 SRA:SRR5111840 https://www.encodeproject.org/files/ENCFF943GTQ/@@download/ENCFF943GTQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released file validation error mismatched file status ENCFF732UEM fastq reads ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF943GTQ 4213450519 Michael Snyder, Stanford 4151d3c2ae737a64c9df6f105383bcec SRA:SRR5111840 https://www.encodeproject.org/files/ENCFF732UEM/@@download/ENCFF732UEM.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released file validation error mismatched file status ENCFF908NBF fastq reads ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF736GCR 4022487390 Michael Snyder, Stanford 481a0e2e5b6315ec753d49fe02feb16b SRA:SRR5111841 https://www.encodeproject.org/files/ENCFF908NBF/@@download/ENCFF908NBF.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released file validation error mismatched file status ENCFF736GCR fastq reads ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF908NBF 3957150705 Michael Snyder, Stanford 082162108166e99a112f8f4bdb0b7fa9 SRA:SRR5111841 https://www.encodeproject.org/files/ENCFF736GCR/@@download/ENCFF736GCR.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released file validation error mismatched file status ENCFF590RRO bam unfiltered alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 100 ENCFF643CGH, ENCFF732UEM, ENCFF943GTQ 7797444218 ENCODE Processing Pipeline 1abb66c543a0e5f8a032518f0afea0b5 https://www.encodeproject.org/files/ENCFF590RRO/@@download/ENCFF590RRO.bam GRCh38 released file validation error mismatched file status ENCFF774VEK bam unfiltered alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 100 ENCFF732UEM, ENCFF807MUK, ENCFF943GTQ 7782562093 ENCODE Processing Pipeline 5a3dac2f764b77dbbe07cb7e2b9cc80d https://www.encodeproject.org/files/ENCFF774VEK/@@download/ENCFF774VEK.bam hg19 released file validation error mismatched file status ENCFF937TOV bam unfiltered alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 100 ENCFF736GCR, ENCFF807MUK, ENCFF908NBF 7803628029 ENCODE Processing Pipeline 4781346dca1a14b1e73983d25b47c6ee https://www.encodeproject.org/files/ENCFF937TOV/@@download/ENCFF937TOV.bam hg19 released file validation error mismatched file status ENCFF965UGV bam unfiltered alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 100 ENCFF643CGH, ENCFF736GCR, ENCFF908NBF 7818952795 ENCODE Processing Pipeline 4c03b96ed9cab24d0470af60932a1a95 https://www.encodeproject.org/files/ENCFF965UGV/@@download/ENCFF965UGV.bam GRCh38 released file validation error mismatched file status ENCFF819YSI bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 100 ENCFF643CGH, ENCFF732UEM, ENCFF943GTQ 6174626958 ENCODE Processing Pipeline 668ae5340696faad826e510901b87766 https://www.encodeproject.org/files/ENCFF819YSI/@@download/ENCFF819YSI.bam GRCh38 released file validation error mismatched file status ENCFF628LZV bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 100 ENCFF732UEM, ENCFF807MUK, ENCFF943GTQ 6164252473 ENCODE Processing Pipeline 14e36a280653f0d5b379f65a87053b80 https://www.encodeproject.org/files/ENCFF628LZV/@@download/ENCFF628LZV.bam hg19 released file validation error mismatched file status ENCFF187GJJ bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 100 ENCFF736GCR, ENCFF807MUK, ENCFF908NBF 6195006698 ENCODE Processing Pipeline 82b3e0c7cbf440173e31f9026e35c69b https://www.encodeproject.org/files/ENCFF187GJJ/@@download/ENCFF187GJJ.bam hg19 released file validation error mismatched file status ENCFF825XYA bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 100 ENCFF643CGH, ENCFF736GCR, ENCFF908NBF 6205447958 ENCODE Processing Pipeline 38318c3b9d527805736e95c1cf923d95 https://www.encodeproject.org/files/ENCFF825XYA/@@download/ENCFF825XYA.bam GRCh38 released file validation error mismatched file status ENCFF347SLV bigWig signal p-value ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF187GJJ, ENCFF447KVS, ENCFF823USR 1967109984 ENCODE Processing Pipeline 1d6a9ebce421e154cc193999109d1de4 https://www.encodeproject.org/files/ENCFF347SLV/@@download/ENCFF347SLV.bigWig hg19 released file validation error mismatched file status ENCFF201VQL bigWig signal p-value ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF628LZV, ENCFF823USR 1740260600 ENCODE Processing Pipeline e325566f3017ca476c919da7810d1450 https://www.encodeproject.org/files/ENCFF201VQL/@@download/ENCFF201VQL.bigWig hg19 released file validation error mismatched file status ENCFF680LRD bigWig signal p-value ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF187GJJ, ENCFF447KVS, ENCFF628LZV, ENCFF823USR 2272995391 ENCODE Processing Pipeline 332da5b56be4fcdbf0c2375476b564d2 https://www.encodeproject.org/files/ENCFF680LRD/@@download/ENCFF680LRD.bigWig hg19 released file validation error mismatched file status ENCFF723NBM bigWig fold change over control ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF187GJJ, ENCFF447KVS, ENCFF823USR 1903090084 ENCODE Processing Pipeline 85dd8ea72348e80222e219108f585ece https://www.encodeproject.org/files/ENCFF723NBM/@@download/ENCFF723NBM.bigWig hg19 released file validation error mismatched file status ENCFF382PMB bigWig fold change over control ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF628LZV, ENCFF823USR 1978919974 ENCODE Processing Pipeline 2ea8acb88c54d252193325289f0a484b https://www.encodeproject.org/files/ENCFF382PMB/@@download/ENCFF382PMB.bigWig hg19 released file validation error mismatched file status ENCFF494KKU bigWig fold change over control ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF187GJJ, ENCFF447KVS, ENCFF628LZV, ENCFF823USR 2626476318 ENCODE Processing Pipeline 7b0a4c113ead54007d63119768ad7cdf https://www.encodeproject.org/files/ENCFF494KKU/@@download/ENCFF494KKU.bigWig hg19 released file validation error mismatched file status ENCFF736SWB bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF187GJJ, ENCFF447KVS, ENCFF823USR 6752970 ENCODE Processing Pipeline 58930d20f2e017b4e6d25187bb6a6797 https://www.encodeproject.org/files/ENCFF736SWB/@@download/ENCFF736SWB.bed.gz hg19 released file validation error mismatched file status ENCFF231ULR bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF187GJJ, ENCFF447KVS, ENCFF628LZV, ENCFF823USR 7296465 ENCODE Processing Pipeline 3e7fa7ee3dd4173731c2988ddbc8564a https://www.encodeproject.org/files/ENCFF231ULR/@@download/ENCFF231ULR.bed.gz hg19 released file validation error mismatched file status ENCFF934HUV bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF628LZV, ENCFF823USR 6849042 ENCODE Processing Pipeline 7f5463b70d7a1a1e597de7476a249f79 https://www.encodeproject.org/files/ENCFF934HUV/@@download/ENCFF934HUV.bed.gz hg19 released file validation error mismatched file status ENCFF730LFP bigBed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF736SWB 11357626 ENCODE Processing Pipeline ecdeb872f90d659b4d46386b9d720a85 https://www.encodeproject.org/files/ENCFF730LFP/@@download/ENCFF730LFP.bigBed hg19 released file validation error mismatched file status ENCFF950DFC bigBed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF934HUV 11310635 ENCODE Processing Pipeline 58e6bd1447f257aa65ef12d9ce10eb99 https://www.encodeproject.org/files/ENCFF950DFC/@@download/ENCFF950DFC.bigBed hg19 released file validation error mismatched file status ENCFF775NJO bed narrowPeak conservative idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF231ULR, ENCFF736SWB, ENCFF934HUV 34120 ENCODE Processing Pipeline 31a760ea5fee01a2304c162de1f817e7 https://www.encodeproject.org/files/ENCFF775NJO/@@download/ENCFF775NJO.bed.gz hg19 released file validation error mismatched file status ENCFF770FRP bigBed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF231ULR 11343652 ENCODE Processing Pipeline 26740e66de461305895276d46409e75c https://www.encodeproject.org/files/ENCFF770FRP/@@download/ENCFF770FRP.bigBed hg19 released file validation error mismatched file status ENCFF518OUJ bed narrowPeak optimal idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF231ULR, ENCFF736SWB, ENCFF934HUV 58866 ENCODE Processing Pipeline 6168710fa83a5c083f8133657ff846a4 https://www.encodeproject.org/files/ENCFF518OUJ/@@download/ENCFF518OUJ.bed.gz hg19 released file validation error mismatched file status ENCFF705XID bigBed narrowPeak conservative idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF553GOV 124398 ENCODE Processing Pipeline 8ebcf7c3bb264552fbac9fec04164a5c https://www.encodeproject.org/files/ENCFF705XID/@@download/ENCFF705XID.bigBed hg19 released file validation error mismatched status, mismatched file status ENCFF630RDI bigBed narrowPeak optimal idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF559PZV 165591 ENCODE Processing Pipeline ce7f7f89a537ed591c334d2165a3c2df https://www.encodeproject.org/files/ENCFF630RDI/@@download/ENCFF630RDI.bigBed hg19 released file validation error mismatched status, mismatched file status ENCFF833CNK bigWig signal p-value ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF825XYA 1927571902 ENCODE Processing Pipeline 0b19b3becf8a3ef58708a9c9ba1b36b0 https://www.encodeproject.org/files/ENCFF833CNK/@@download/ENCFF833CNK.bigWig GRCh38 released file validation error mismatched file status ENCFF128VGE bigWig signal p-value ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF819YSI 1650387634 ENCODE Processing Pipeline f4d41f9e41af65f538d97900b430a65e https://www.encodeproject.org/files/ENCFF128VGE/@@download/ENCFF128VGE.bigWig GRCh38 released file validation error mismatched file status ENCFF567WTD bigWig signal p-value ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF819YSI, ENCFF825XYA 2266132218 ENCODE Processing Pipeline 94cfe007c52d2ec6bdc2e12f9e8860ef https://www.encodeproject.org/files/ENCFF567WTD/@@download/ENCFF567WTD.bigWig GRCh38 released file validation error mismatched file status ENCFF909UDS bigWig fold change over control ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF819YSI 1984474651 ENCODE Processing Pipeline be0e4f3d7665b994d821cb70890b749b https://www.encodeproject.org/files/ENCFF909UDS/@@download/ENCFF909UDS.bigWig GRCh38 released file validation error mismatched file status ENCFF226RHI bigWig fold change over control ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF819YSI, ENCFF825XYA 2622445744 ENCODE Processing Pipeline de7bcd2720f774f0914848006f1fd921 https://www.encodeproject.org/files/ENCFF226RHI/@@download/ENCFF226RHI.bigWig GRCh38 released file validation error mismatched file status ENCFF298VHQ bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF825XYA 6635635 ENCODE Processing Pipeline 5b8e51214286fff2e3b6bdb1bb023d20 https://www.encodeproject.org/files/ENCFF298VHQ/@@download/ENCFF298VHQ.bed.gz GRCh38 released file validation error mismatched file status ENCFF988VKK bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF819YSI 6755814 ENCODE Processing Pipeline ac2e130afd39b6b23373f1ccd8d09cea https://www.encodeproject.org/files/ENCFF988VKK/@@download/ENCFF988VKK.bed.gz GRCh38 released file validation error mismatched file status ENCFF413YMR bigBed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF298VHQ 11380156 ENCODE Processing Pipeline 525fd76eeb77e1b6a2407e52019d806c https://www.encodeproject.org/files/ENCFF413YMR/@@download/ENCFF413YMR.bigBed GRCh38 released file validation error mismatched file status ENCFF073MRU bigBed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF988VKK 11331506 ENCODE Processing Pipeline 394d9f29308093e83bb2dc11753e7d5b https://www.encodeproject.org/files/ENCFF073MRU/@@download/ENCFF073MRU.bigBed GRCh38 released file validation error mismatched file status ENCFF534ADS bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF746SKT, ENCFF819YSI, ENCFF825XYA 7281854 ENCODE Processing Pipeline e48dd43d937b8c092082c105136bbbc4 https://www.encodeproject.org/files/ENCFF534ADS/@@download/ENCFF534ADS.bed.gz GRCh38 released file validation error mismatched file status ENCFF650KHY bigBed narrowPeak conservative idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF982IIX 128334 ENCODE Processing Pipeline 28964387dbc481a113b881bf1e1e2a2f https://www.encodeproject.org/files/ENCFF650KHY/@@download/ENCFF650KHY.bigBed GRCh38 released file validation error mismatched file status ENCFF506VEM bigBed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF534ADS 11364579 ENCODE Processing Pipeline 03d723d5cd02b9d330f68bf8b6253a82 https://www.encodeproject.org/files/ENCFF506VEM/@@download/ENCFF506VEM.bigBed GRCh38 released file validation error mismatched file status ENCFF982IIX bed narrowPeak conservative idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF298VHQ, ENCFF419RSJ, ENCFF534ADS, ENCFF988VKK 34378 ENCODE Processing Pipeline 166dc5f45f4f0c24aab3789a5292b6d5 https://www.encodeproject.org/files/ENCFF982IIX/@@download/ENCFF982IIX.bed.gz GRCh38 released file validation error mismatched file status ENCFF576PFG bigBed narrowPeak optimal idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF209WRW 165644 ENCODE Processing Pipeline da7deef55ecc62dd58e9b3c80f4794b1 https://www.encodeproject.org/files/ENCFF576PFG/@@download/ENCFF576PFG.bigBed GRCh38 released file validation error mismatched file status ENCFF209WRW bed narrowPeak optimal idr thresholded peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF298VHQ, ENCFF419RSJ, ENCFF534ADS, ENCFF988VKK 55736 ENCODE Processing Pipeline 8c6acf838c6bc9e8421256abf7de4aa7 https://www.encodeproject.org/files/ENCFF209WRW/@@download/ENCFF209WRW.bed.gz GRCh38 released file validation error mismatched file status ENCFF523TFJ bigWig fold change over control ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF746SKT, ENCFF825XYA 1913104965 ENCODE Processing Pipeline 1f2395578dc5263fb68aadc33e9cc2d1 https://www.encodeproject.org/files/ENCFF523TFJ/@@download/ENCFF523TFJ.bigWig GRCh38 released file validation error mismatched file status ENCFF000RSA bam alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RSJ 580177261 Vishwanath Iyer, UTA da737f64a7e9d1e5c89af9d4e0d0e18d https://www.encodeproject.org/files/ENCFF000RSA/@@download/ENCFF000RSA.bam hg19 archived low read length insufficient read depth control extremely low read depth ENCFF000RSB bigWig base overlap signal ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 98512989 Vishwanath Iyer, UTA bebcc1e380b2317d8dc84e8c0fec2487 https://www.encodeproject.org/files/ENCFF000RSB/@@download/ENCFF000RSB.bigWig hg19 archived low read length missing derived_from insufficient read depth control extremely low read depth ENCFF000RSC bigBed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USS 2337793 Vishwanath Iyer, UTA 7d566bc6a36cdaedf98d28cdf1b6cd5b https://www.encodeproject.org/files/ENCFF000RSC/@@download/ENCFF000RSC.bigBed hg19 archived low read length insufficient read depth control extremely low read depth ENCFF000RSD bigWig signal ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3162147031 Vishwanath Iyer, UTA b22bd7d64bd459f3fd07ac0202fa48fd https://www.encodeproject.org/files/ENCFF000RSD/@@download/ENCFF000RSD.bigWig hg19 archived low read length missing derived_from insufficient read depth control extremely low read depth ENCFF000RSJ fastq reads ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 569171040 Vishwanath Iyer, UTA 10a7190630c1cf28e238423cb98b5cfa https://www.encodeproject.org/files/ENCFF000RSJ/@@download/ENCFF000RSJ.fastq.gz Illumina Genome Analyzer /files/ENCFF795IME/ released low read length insufficient read depth control extremely low read depth ENCFF001USS bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1513785 Vishwanath Iyer, UTA f184dbeabc74f58f3dcf39b997556962 https://www.encodeproject.org/files/ENCFF001USS/@@download/ENCFF001USS.bed.gz hg19 archived low read length missing derived_from insufficient read depth control extremely low read depth ENCFF002DAR bed narrowPeak optimal idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 775431 ENCODE Consortium Analysis Working Group 94d260bfb6b2aa8ab39d8332381857b5 https://www.encodeproject.org/files/ENCFF002DAR/@@download/ENCFF002DAR.bed.gz hg19 archived low read length missing derived_from insufficient read depth control extremely low read depth ENCFF608FJT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAR 1433249 ENCODE Consortium ded3350a782b3f4ab6d8c1a233fcec00 https://www.encodeproject.org/files/ENCFF608FJT/@@download/ENCFF608FJT.bigBed hg19 archived low read length insufficient read depth control extremely low read depth ENCFF727RTF bam unfiltered alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSJ, ENCFF807MUK 735964556 ENCODE Processing Pipeline 152ef6c1b5b5d6496c49b98e81224bd7 https://www.encodeproject.org/files/ENCFF727RTF/@@download/ENCFF727RTF.bam hg19 released low read length insufficient read depth control extremely low read depth ENCFF325QRE bam alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSJ, ENCFF807MUK 432574897 ENCODE Processing Pipeline f778b82583b152339cc56642ecd8b1f8 https://www.encodeproject.org/files/ENCFF325QRE/@@download/ENCFF325QRE.bam hg19 released low read length insufficient read depth control extremely low read depth ENCFF148GTR bam unfiltered alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSJ, ENCFF643CGH 736880128 ENCODE Processing Pipeline 055a4fd911baf1d308902c322bb759dd https://www.encodeproject.org/files/ENCFF148GTR/@@download/ENCFF148GTR.bam GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF135DRQ bam alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSJ, ENCFF643CGH 432278085 ENCODE Processing Pipeline 95fc487af08988dfcc150c0eb4853d84 https://www.encodeproject.org/files/ENCFF135DRQ/@@download/ENCFF135DRQ.bam GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF647PDX bigWig signal p-value ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135DRQ, ENCFF381ASB 110736114 ENCODE Processing Pipeline d3ecab762bf3623363c35a5130f210e7 https://www.encodeproject.org/files/ENCFF647PDX/@@download/ENCFF647PDX.bigWig GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF671XDX bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135DRQ, ENCFF381ASB 1263822 ENCODE Processing Pipeline 278c0c31cc9348bb3ff229043d8826c9 https://www.encodeproject.org/files/ENCFF671XDX/@@download/ENCFF671XDX.bed.gz GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF559TGJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF671XDX 534248 ENCODE Processing Pipeline e8d4a1b789a559e8a91a64c63aea5985 https://www.encodeproject.org/files/ENCFF559TGJ/@@download/ENCFF559TGJ.bed.gz GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF750XSS bigBed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF671XDX 2650866 ENCODE Processing Pipeline 9398c797cb8d964f388aca62cadf7d03 https://www.encodeproject.org/files/ENCFF750XSS/@@download/ENCFF750XSS.bigBed GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF586WDJ bigWig fold change over control ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135DRQ, ENCFF381ASB 129106214 ENCODE Processing Pipeline ce5b39f2e45fda29a15fde37afd40966 https://www.encodeproject.org/files/ENCFF586WDJ/@@download/ENCFF586WDJ.bigWig GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF595YIS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF559TGJ 815483 ENCODE Processing Pipeline e728ced126c5d47c438b27766533da48 https://www.encodeproject.org/files/ENCFF595YIS/@@download/ENCFF595YIS.bigBed GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF641DBD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF236WLA 1046980 ENCODE Processing Pipeline 12590cdb588ce48cc00c91ff1653911d https://www.encodeproject.org/files/ENCFF641DBD/@@download/ENCFF641DBD.bigBed hg19 released low read length insufficient read depth control extremely low read depth ENCFF521WEF bigBed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF803HUJ 2734548 ENCODE Processing Pipeline 430a817c255790f8c86db424b603bbd5 https://www.encodeproject.org/files/ENCFF521WEF/@@download/ENCFF521WEF.bigBed hg19 released low read length insufficient read depth control extremely low read depth ENCFF619IWL bigWig fold change over control ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF325QRE 129186157 ENCODE Processing Pipeline 97fc77e9c64159325aefb3974dac02db https://www.encodeproject.org/files/ENCFF619IWL/@@download/ENCFF619IWL.bigWig hg19 released low read length insufficient read depth control extremely low read depth ENCFF225ZBE bigWig signal p-value ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF325QRE 112362480 ENCODE Processing Pipeline c3c145b205e0185840d7f352bc22bb11 https://www.encodeproject.org/files/ENCFF225ZBE/@@download/ENCFF225ZBE.bigWig hg19 released low read length insufficient read depth control extremely low read depth ENCFF803HUJ bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF325QRE 1318856 ENCODE Processing Pipeline 8f5bf2f5b92b134ef4645a547364f639 https://www.encodeproject.org/files/ENCFF803HUJ/@@download/ENCFF803HUJ.bed.gz hg19 released low read length insufficient read depth control extremely low read depth ENCFF236WLA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF803HUJ 553567 ENCODE Processing Pipeline 3cf3e8ff408a019f2f03c6e1ba7f7678 https://www.encodeproject.org/files/ENCFF236WLA/@@download/ENCFF236WLA.bed.gz hg19 released low read length insufficient read depth control extremely low read depth ENCFF187IJJ bigWig signal p-value ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF019LID, ENCFF812MYK 802298431 ENCODE Processing Pipeline 1afdadc1137dd6a7f9ebf544e50d9cba https://www.encodeproject.org/files/ENCFF187IJJ/@@download/ENCFF187IJJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF696VSP bigWig fold change over control ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF019LID, ENCFF812MYK 501260679 ENCODE Processing Pipeline 13d3e00b9f807a88b784981be68ab68b https://www.encodeproject.org/files/ENCFF696VSP/@@download/ENCFF696VSP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF131TVY bed narrowPeak peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF019LID, ENCFF812MYK 5502216 ENCODE Processing Pipeline b4632ee0e74a03f71d25d7e8005072d9 https://www.encodeproject.org/files/ENCFF131TVY/@@download/ENCFF131TVY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF334YLV bigBed narrowPeak peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF131TVY 11074067 ENCODE Processing Pipeline a261734218343fe1b6d4adea3807e1e5 https://www.encodeproject.org/files/ENCFF334YLV/@@download/ENCFF334YLV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF005XMA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF001TDO, ENCFF131TVY 131408 ENCODE Processing Pipeline b1669474197e615d43c59adb149d6c2a https://www.encodeproject.org/files/ENCFF005XMA/@@download/ENCFF005XMA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF085VWP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF005XMA 385418 ENCODE Processing Pipeline 7cfe4d7f689a1db5a54b930560cb8ae1 https://www.encodeproject.org/files/ENCFF085VWP/@@download/ENCFF085VWP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF758YWX bigWig signal p-value ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF248XON, ENCFF520BIQ 812157837 ENCODE Processing Pipeline d4be1b1f7f64b0292bab54a45b5796e9 https://www.encodeproject.org/files/ENCFF758YWX/@@download/ENCFF758YWX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF347JSZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF302MVW, ENCFF419RSJ 129749 ENCODE Processing Pipeline eeccd47ceb46827dc48884093cfba2da https://www.encodeproject.org/files/ENCFF347JSZ/@@download/ENCFF347JSZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF625BUD bigWig fold change over control ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF248XON, ENCFF520BIQ 509473399 ENCODE Processing Pipeline 871948cbff96821ca9406a23a8913d77 https://www.encodeproject.org/files/ENCFF625BUD/@@download/ENCFF625BUD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF302MVW bed narrowPeak peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF248XON, ENCFF520BIQ 5375150 ENCODE Processing Pipeline 0a540584b906b928743be9d9a861a6fe https://www.encodeproject.org/files/ENCFF302MVW/@@download/ENCFF302MVW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF143ESE bigBed narrowPeak peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF302MVW 11056797 ENCODE Processing Pipeline 18f9658a221da0e0c9dd6afac1662957 https://www.encodeproject.org/files/ENCFF143ESE/@@download/ENCFF143ESE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF567OUT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF347JSZ 383902 ENCODE Processing Pipeline d5adeb3cea58577e22fa78fad800be84 https://www.encodeproject.org/files/ENCFF567OUT/@@download/ENCFF567OUT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF342FJM fastq reads ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 1 76 single-ended 994468140 Bradley Bernstein, Broad 1dd950af12bb3022ec01aa42d4ef4747 https://www.encodeproject.org/files/ENCFF342FJM/@@download/ENCFF342FJM.fastq.gz Illumina HiSeq 2500 /files/ENCFF280YFB/, /files/ENCFF600AGN/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF973EXU bam unfiltered alignments ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 76 ENCFF342FJM, ENCFF643CGH 989311873 ENCODE Processing Pipeline 489e58a47c65af6657bd72b9c994310d https://www.encodeproject.org/files/ENCFF973EXU/@@download/ENCFF973EXU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF520BIQ bam alignments ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 76 ENCFF342FJM, ENCFF643CGH 568662639 ENCODE Processing Pipeline 4746d244a86b2816390e8ae469d1e994 https://www.encodeproject.org/files/ENCFF520BIQ/@@download/ENCFF520BIQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF754SFY bam unfiltered alignments ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 76 ENCFF342FJM, ENCFF807MUK 988130234 ENCODE Processing Pipeline 1822b289f80990fd2de03235cc0bf707 https://www.encodeproject.org/files/ENCFF754SFY/@@download/ENCFF754SFY.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF019LID bam alignments ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 76 ENCFF342FJM, ENCFF807MUK 568668209 ENCODE Processing Pipeline e943d4a363baee132f95776fade5833e https://www.encodeproject.org/files/ENCFF019LID/@@download/ENCFF019LID.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF911HHR fastq reads ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF316GJN 2502109724 Michael Snyder, Stanford fb9256a4a2cb2555b8f37653093c7375 SRA:SRR5111974 https://www.encodeproject.org/files/ENCFF911HHR/@@download/ENCFF911HHR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF333HZB fastq reads ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF564WFC 3308748972 Michael Snyder, Stanford e566ba71ae188ba2cde7ffda81e08f32 SRA:SRR5111973 https://www.encodeproject.org/files/ENCFF333HZB/@@download/ENCFF333HZB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF316GJN fastq reads ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF911HHR 2560114761 Michael Snyder, Stanford ad5d61993d73d433ece1c4ac3a89d70b SRA:SRR5111974 https://www.encodeproject.org/files/ENCFF316GJN/@@download/ENCFF316GJN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF564WFC fastq reads ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF333HZB 3378221581 Michael Snyder, Stanford 0ae936ea1940a90d78d426fb2073e903 SRA:SRR5111973 https://www.encodeproject.org/files/ENCFF564WFC/@@download/ENCFF564WFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF591YYK bam unfiltered alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF316GJN, ENCFF807MUK, ENCFF911HHR 5608008764 ENCODE Processing Pipeline 88a056763f0a6088399ea71a244f2a29 https://www.encodeproject.org/files/ENCFF591YYK/@@download/ENCFF591YYK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF472QFG bam unfiltered alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF316GJN, ENCFF643CGH, ENCFF911HHR 5612549015 ENCODE Processing Pipeline b971bb92ff90752208c93181d45deeb2 https://www.encodeproject.org/files/ENCFF472QFG/@@download/ENCFF472QFG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF026HEH bam unfiltered alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF333HZB, ENCFF564WFC, ENCFF807MUK 7255240999 ENCODE Processing Pipeline 48378841067a856feafe5768f5c94c53 https://www.encodeproject.org/files/ENCFF026HEH/@@download/ENCFF026HEH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF333APH bam unfiltered alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF333HZB, ENCFF564WFC, ENCFF643CGH 7260921856 ENCODE Processing Pipeline 3dead8f88ffeec4da1a671a810c0c30f https://www.encodeproject.org/files/ENCFF333APH/@@download/ENCFF333APH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF721QYO bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF316GJN, ENCFF643CGH, ENCFF911HHR 4737663685 ENCODE Processing Pipeline f3ec6efcb53df8fe119977f933a5f940 https://www.encodeproject.org/files/ENCFF721QYO/@@download/ENCFF721QYO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF586HZR bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF316GJN, ENCFF807MUK, ENCFF911HHR 4736498895 ENCODE Processing Pipeline 0773eca57e0bb62d8513bd6a68f980d1 https://www.encodeproject.org/files/ENCFF586HZR/@@download/ENCFF586HZR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF522UYX bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF333HZB, ENCFF564WFC, ENCFF643CGH 6158427302 ENCODE Processing Pipeline 1c97fd0bfe354c4f078795cf037546ed https://www.encodeproject.org/files/ENCFF522UYX/@@download/ENCFF522UYX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF746OBW bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF333HZB, ENCFF564WFC, ENCFF807MUK 6156622060 ENCODE Processing Pipeline 8563b5127f99c47673c7e8b24ab0e5a9 https://www.encodeproject.org/files/ENCFF746OBW/@@download/ENCFF746OBW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF286YGZ bigWig signal p-value ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF746OBW 1649361985 ENCODE Processing Pipeline 44cf3fd8ee97aebb513c72f31859fc53 https://www.encodeproject.org/files/ENCFF286YGZ/@@download/ENCFF286YGZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF793MHJ bigWig signal p-value ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF586HZR 1399239191 ENCODE Processing Pipeline ffd1d41d31334ca3b547c33de7d0d554 https://www.encodeproject.org/files/ENCFF793MHJ/@@download/ENCFF793MHJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF114HMS bigWig signal p-value ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF586HZR, ENCFF746OBW 1987862826 ENCODE Processing Pipeline 1fb30c111563ed62a871dbfea5dc328f https://www.encodeproject.org/files/ENCFF114HMS/@@download/ENCFF114HMS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF180MCQ bigWig fold change over control ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF746OBW 1623294095 ENCODE Processing Pipeline fc094f36512975c1585c2ea6a84ccdac https://www.encodeproject.org/files/ENCFF180MCQ/@@download/ENCFF180MCQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF762IAH bigWig fold change over control ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF586HZR 1404148219 ENCODE Processing Pipeline 351d6c2a6f08af402636dee45ea4b0af https://www.encodeproject.org/files/ENCFF762IAH/@@download/ENCFF762IAH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF144MYC bigWig fold change over control ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF586HZR, ENCFF746OBW 2058169159 ENCODE Processing Pipeline b9360de31c90f838d3cb51afa7c3cf21 https://www.encodeproject.org/files/ENCFF144MYC/@@download/ENCFF144MYC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF296UIC bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF746OBW 7048382 ENCODE Processing Pipeline 4053ff146526175ca8edd55dc39b2c67 https://www.encodeproject.org/files/ENCFF296UIC/@@download/ENCFF296UIC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF091ECC bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF586HZR 6778179 ENCODE Processing Pipeline 44d512a6e130c09fc1ee44b1c2d4a7c1 https://www.encodeproject.org/files/ENCFF091ECC/@@download/ENCFF091ECC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF663GOE bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF586HZR, ENCFF746OBW 7212396 ENCODE Processing Pipeline eb2770859d995032b26daf8f74000301 https://www.encodeproject.org/files/ENCFF663GOE/@@download/ENCFF663GOE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF136UNU bigBed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF296UIC 13321691 ENCODE Processing Pipeline e52fe3e49b890105f0a85f433f25896c https://www.encodeproject.org/files/ENCFF136UNU/@@download/ENCFF136UNU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF454BOD bigBed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF091ECC 13431949 ENCODE Processing Pipeline eb7ff1b2c045d5f3e11967b9e0233377 https://www.encodeproject.org/files/ENCFF454BOD/@@download/ENCFF454BOD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF707NGI bigBed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF663GOE 13195866 ENCODE Processing Pipeline b229d3d6e4d0fadc0b84a864170fa1fb https://www.encodeproject.org/files/ENCFF707NGI/@@download/ENCFF707NGI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF512FOT bed narrowPeak conservative idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF091ECC, ENCFF296UIC, ENCFF663GOE 216682 ENCODE Processing Pipeline c2955145790ea419148dabd030b3b232 https://www.encodeproject.org/files/ENCFF512FOT/@@download/ENCFF512FOT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF174XZS bigBed narrowPeak conservative idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF512FOT 425095 ENCODE Processing Pipeline 2d1afa98578739d58267caf8831633be https://www.encodeproject.org/files/ENCFF174XZS/@@download/ENCFF174XZS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF337KLA bigBed narrowPeak optimal idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF387YMM 506797 ENCODE Processing Pipeline 53690acdefaab4d651e9ba7ae3c8fba2 https://www.encodeproject.org/files/ENCFF337KLA/@@download/ENCFF337KLA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF387YMM bed narrowPeak optimal idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF091ECC, ENCFF296UIC, ENCFF663GOE 272725 ENCODE Processing Pipeline e379a8801c0c58dded340d0cc7ef1627 https://www.encodeproject.org/files/ENCFF387YMM/@@download/ENCFF387YMM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF366JDT bigWig signal p-value ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF522UYX 1562660487 ENCODE Processing Pipeline 59cacdc68af1b7020c714185fb91ab30 https://www.encodeproject.org/files/ENCFF366JDT/@@download/ENCFF366JDT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF014YVH bigWig signal p-value ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF721QYO 1443716005 ENCODE Processing Pipeline cfe3ad1b7cee4c4f651d114b6bfbcd0e https://www.encodeproject.org/files/ENCFF014YVH/@@download/ENCFF014YVH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF038SPB bigWig signal p-value ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF522UYX, ENCFF721QYO 1996888630 ENCODE Processing Pipeline 48347b8e985892cc5b375d384a527df9 https://www.encodeproject.org/files/ENCFF038SPB/@@download/ENCFF038SPB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF205IZY bigWig fold change over control ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF522UYX 1574139462 ENCODE Processing Pipeline 35b5a6f3ac1303333660bceb51081001 https://www.encodeproject.org/files/ENCFF205IZY/@@download/ENCFF205IZY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF784CLN bigWig fold change over control ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF721QYO 1390001662 ENCODE Processing Pipeline f3cc6df6ad8d59b24ebeb2c100a558c6 https://www.encodeproject.org/files/ENCFF784CLN/@@download/ENCFF784CLN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF413NYF bigWig fold change over control ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF522UYX, ENCFF721QYO 2066600225 ENCODE Processing Pipeline 9a30f5c66d3a52e899a207728834bd31 https://www.encodeproject.org/files/ENCFF413NYF/@@download/ENCFF413NYF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF753LES bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF522UYX 6976805 ENCODE Processing Pipeline 9d4e2b1c8203c48250414c81c110c1b9 https://www.encodeproject.org/files/ENCFF753LES/@@download/ENCFF753LES.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF809PLY bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF721QYO 6680393 ENCODE Processing Pipeline ca270e053b94d2c5f55905a2958920b0 https://www.encodeproject.org/files/ENCFF809PLY/@@download/ENCFF809PLY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF766YZS bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF522UYX, ENCFF721QYO 7193956 ENCODE Processing Pipeline 2225491a018f082f1d914f27ed6b324a https://www.encodeproject.org/files/ENCFF766YZS/@@download/ENCFF766YZS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF786EQC bigBed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF753LES 13345033 ENCODE Processing Pipeline 6106449fc46641f1c3a16dea0f3b21f2 https://www.encodeproject.org/files/ENCFF786EQC/@@download/ENCFF786EQC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF791BLP bigBed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF809PLY 13440240 ENCODE Processing Pipeline fd7175452db751f82013f46d0d89eab2 https://www.encodeproject.org/files/ENCFF791BLP/@@download/ENCFF791BLP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF874NLX bigBed narrowPeak conservative idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF314BZO 426596 ENCODE Processing Pipeline 53053a64b68b2113e64efd1ca52bcfcd https://www.encodeproject.org/files/ENCFF874NLX/@@download/ENCFF874NLX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF733KHF bigBed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF766YZS 13206969 ENCODE Processing Pipeline 869568c665749c26eec366d272c6fdc1 https://www.encodeproject.org/files/ENCFF733KHF/@@download/ENCFF733KHF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF314BZO bed narrowPeak conservative idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF753LES, ENCFF766YZS, ENCFF809PLY 217928 ENCODE Processing Pipeline 05d28d6d85516843e051bf610f7db99a https://www.encodeproject.org/files/ENCFF314BZO/@@download/ENCFF314BZO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF232GOA bigBed narrowPeak optimal idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF339XZT 513461 ENCODE Processing Pipeline 373a11189151802827e1d67d7604619e https://www.encodeproject.org/files/ENCFF232GOA/@@download/ENCFF232GOA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF339XZT bed narrowPeak optimal idr thresholded peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF753LES, ENCFF766YZS, ENCFF809PLY 277838 ENCODE Processing Pipeline 57bd86637314d1e7e0a877dc8f7868dc https://www.encodeproject.org/files/ENCFF339XZT/@@download/ENCFF339XZT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF470VSN fastq reads ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF752RBW 2619699790 Michael Snyder, Stanford 0fd08f89dbfe17f541f14c4c14496176 SRA:SRR6213531 https://www.encodeproject.org/files/ENCFF470VSN/@@download/ENCFF470VSN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF752RBW fastq reads ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF470VSN 2679154377 Michael Snyder, Stanford 292faa4f6ac9acef8a0bf01dba580d4e SRA:SRR6213531 https://www.encodeproject.org/files/ENCFF752RBW/@@download/ENCFF752RBW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF108NAI fastq reads ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF459YDW 3193584609 Michael Snyder, Stanford 39e888dba2d73913d41ec1a2ae91d3f6 SRA:SRR6213532 https://www.encodeproject.org/files/ENCFF108NAI/@@download/ENCFF108NAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF459YDW fastq reads ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF108NAI 3258254463 Michael Snyder, Stanford 0263e4df18f532c4d9d3adc74c89a7fb SRA:SRR6213532 https://www.encodeproject.org/files/ENCFF459YDW/@@download/ENCFF459YDW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF420HJZ bam unfiltered alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF470VSN, ENCFF752RBW, ENCFF807MUK 5406048745 ENCODE Processing Pipeline 3703989dedb83b03a8b62c28fdca8946 https://www.encodeproject.org/files/ENCFF420HJZ/@@download/ENCFF420HJZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF170JGP bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF470VSN, ENCFF752RBW, ENCFF807MUK 4464408788 ENCODE Processing Pipeline 6e8f8b90bacfa3c72753a745fe53b5f3 https://www.encodeproject.org/files/ENCFF170JGP/@@download/ENCFF170JGP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF627FHL bam unfiltered alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF470VSN, ENCFF643CGH, ENCFF752RBW 5411006177 ENCODE Processing Pipeline c7f3549994a25f935fd9a890134c5051 https://www.encodeproject.org/files/ENCFF627FHL/@@download/ENCFF627FHL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF434TKE bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF470VSN, ENCFF643CGH, ENCFF752RBW 4466591689 ENCODE Processing Pipeline 5bd145a07a80e0a754cd6fa49c89933c https://www.encodeproject.org/files/ENCFF434TKE/@@download/ENCFF434TKE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF932OGJ bam unfiltered alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF108NAI, ENCFF459YDW, ENCFF807MUK 6484269168 ENCODE Processing Pipeline 35956027cedc2c47c6e1ec3f2189a13e https://www.encodeproject.org/files/ENCFF932OGJ/@@download/ENCFF932OGJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF368YCU bam unfiltered alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF108NAI, ENCFF459YDW, ENCFF643CGH 6490488328 ENCODE Processing Pipeline 09e5eb548f9e6b56b4937b5d89396240 https://www.encodeproject.org/files/ENCFF368YCU/@@download/ENCFF368YCU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF324LWS bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF108NAI, ENCFF459YDW, ENCFF807MUK 5343523636 ENCODE Processing Pipeline 334036b44b797ce623f055acbf3785e3 https://www.encodeproject.org/files/ENCFF324LWS/@@download/ENCFF324LWS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF658VID bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF108NAI, ENCFF459YDW, ENCFF643CGH 5346384127 ENCODE Processing Pipeline 501184402345d67652ac5c75bb4d8415 https://www.encodeproject.org/files/ENCFF658VID/@@download/ENCFF658VID.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF318WRD bigWig signal p-value ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF170JGP 1408846103 ENCODE Processing Pipeline 6086561d691f9c5b4430ad837b55d47e https://www.encodeproject.org/files/ENCFF318WRD/@@download/ENCFF318WRD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF222CKR bigWig signal p-value ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF324LWS 1398493076 ENCODE Processing Pipeline e905205534f77ae241f5e4b9b32e7f4a https://www.encodeproject.org/files/ENCFF222CKR/@@download/ENCFF222CKR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF419SVE bigWig fold change over control ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF324LWS 1526050194 ENCODE Processing Pipeline 105907a897debd88bbba5312e97125f3 https://www.encodeproject.org/files/ENCFF419SVE/@@download/ENCFF419SVE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF950OME bigWig signal p-value ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF170JGP, ENCFF324LWS 2007912297 ENCODE Processing Pipeline 8f03ea3c7e24577c145d11c122a293fe https://www.encodeproject.org/files/ENCFF950OME/@@download/ENCFF950OME.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF072XPV bigWig fold change over control ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF170JGP 1363810448 ENCODE Processing Pipeline af42dfc83b60290b26d6e5e4c60d28ec https://www.encodeproject.org/files/ENCFF072XPV/@@download/ENCFF072XPV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF402VML bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF170JGP 6522220 ENCODE Processing Pipeline dc7aaa90d97e6025a8ddaa70a41e8e25 https://www.encodeproject.org/files/ENCFF402VML/@@download/ENCFF402VML.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF733PWG bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF170JGP, ENCFF324LWS 7129635 ENCODE Processing Pipeline d41f73b13f94d2370bf8cdbdf40634e4 https://www.encodeproject.org/files/ENCFF733PWG/@@download/ENCFF733PWG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF752EHL bigWig fold change over control ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF170JGP, ENCFF324LWS 2021095610 ENCODE Processing Pipeline 7511e89112998eb3fcb65debd6b4e2bc https://www.encodeproject.org/files/ENCFF752EHL/@@download/ENCFF752EHL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF075OJQ bigBed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF402VML 11226160 ENCODE Processing Pipeline 72acaf833d1f29ac293ec9a3b2fad0c2 https://www.encodeproject.org/files/ENCFF075OJQ/@@download/ENCFF075OJQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF732OEZ bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF324LWS 6658320 ENCODE Processing Pipeline 3b4dfd855b91edc526c9d5b34f954c1d https://www.encodeproject.org/files/ENCFF732OEZ/@@download/ENCFF732OEZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF883ADS bigBed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF732OEZ 11169561 ENCODE Processing Pipeline 60faf2238dfdf77a362efb9a27a047b5 https://www.encodeproject.org/files/ENCFF883ADS/@@download/ENCFF883ADS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF243TSL bigBed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF733PWG 10976979 ENCODE Processing Pipeline e46773fd4e3e77e3d9493f30732335e8 https://www.encodeproject.org/files/ENCFF243TSL/@@download/ENCFF243TSL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF631ZWT bigBed narrowPeak conservative idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF064BPY 133928 ENCODE Processing Pipeline 7fae9c016524f89b489d8f6714f31d54 https://www.encodeproject.org/files/ENCFF631ZWT/@@download/ENCFF631ZWT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF064BPY bed narrowPeak conservative idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF402VML, ENCFF732OEZ, ENCFF733PWG 52000 ENCODE Processing Pipeline 7c4bf3801e7608abd66ea63ad40a2614 https://www.encodeproject.org/files/ENCFF064BPY/@@download/ENCFF064BPY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF067GKU bigBed narrowPeak optimal idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF145PVL 195062 ENCODE Processing Pipeline 39aeb9084199b174dd202125e14e8114 https://www.encodeproject.org/files/ENCFF067GKU/@@download/ENCFF067GKU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF145PVL bed narrowPeak optimal idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF402VML, ENCFF732OEZ, ENCFF733PWG 72701 ENCODE Processing Pipeline a86a98c93f50dac8afad10fbf4def1aa https://www.encodeproject.org/files/ENCFF145PVL/@@download/ENCFF145PVL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF730GNZ bigWig signal p-value ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF434TKE 1375359102 ENCODE Processing Pipeline b895310024709117564e0b22f3c65f97 https://www.encodeproject.org/files/ENCFF730GNZ/@@download/ENCFF730GNZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF676EMX bigWig signal p-value ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF658VID 1218554472 ENCODE Processing Pipeline 64cc113efdc3843aa9fd71b3c33e9de7 https://www.encodeproject.org/files/ENCFF676EMX/@@download/ENCFF676EMX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF913MER bigWig signal p-value ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF434TKE, ENCFF658VID 2009253936 ENCODE Processing Pipeline be9ff0853c3f07eee2a2adde05ea6005 https://www.encodeproject.org/files/ENCFF913MER/@@download/ENCFF913MER.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF213ZHG bigWig fold change over control ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF434TKE 1392337673 ENCODE Processing Pipeline f0c7b27da0f73b8ee6c3509776bc18f4 https://www.encodeproject.org/files/ENCFF213ZHG/@@download/ENCFF213ZHG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF852VMY bigWig fold change over control ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF658VID 1497851963 ENCODE Processing Pipeline 335bb99ce28a05f3525c4db57e8ad5ad https://www.encodeproject.org/files/ENCFF852VMY/@@download/ENCFF852VMY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF651AAI bigWig fold change over control ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF434TKE, ENCFF658VID 2022624830 ENCODE Processing Pipeline fb92f9d3c97f370ef40e0881edaef671 https://www.encodeproject.org/files/ENCFF651AAI/@@download/ENCFF651AAI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF746RGD bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF658VID 6709667 ENCODE Processing Pipeline 097efb3ec8d084916df51dabd1103386 https://www.encodeproject.org/files/ENCFF746RGD/@@download/ENCFF746RGD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF049GVE bigBed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF199RLG 11234097 ENCODE Processing Pipeline 48e346e168a8707e05ae502019722b9b https://www.encodeproject.org/files/ENCFF049GVE/@@download/ENCFF049GVE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF199RLG bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF434TKE 6519456 ENCODE Processing Pipeline 247d40d073242ee265c20fa025a24fea https://www.encodeproject.org/files/ENCFF199RLG/@@download/ENCFF199RLG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF818SJJ bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF434TKE, ENCFF658VID 7134050 ENCODE Processing Pipeline b40f234804e8cf4d470a13c69e51ed44 https://www.encodeproject.org/files/ENCFF818SJJ/@@download/ENCFF818SJJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF671DOJ bigBed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF746RGD 11171992 ENCODE Processing Pipeline 06d05c50141404fbde54c67b7c3e3639 https://www.encodeproject.org/files/ENCFF671DOJ/@@download/ENCFF671DOJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF963UJV bed narrowPeak conservative idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF199RLG, ENCFF419RSJ, ENCFF746RGD, ENCFF818SJJ 53017 ENCODE Processing Pipeline 5b1ac8ed6b0848e7710229f6beedb070 https://www.encodeproject.org/files/ENCFF963UJV/@@download/ENCFF963UJV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF547BIH bigBed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF818SJJ 10968290 ENCODE Processing Pipeline 1630fc81dc3e0bc005b7248fccaba28e https://www.encodeproject.org/files/ENCFF547BIH/@@download/ENCFF547BIH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF011XFD bigBed narrowPeak conservative idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF963UJV 136417 ENCODE Processing Pipeline add32b2cf5eeae7a96cd36edf3556e99 https://www.encodeproject.org/files/ENCFF011XFD/@@download/ENCFF011XFD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF357ZHI bed narrowPeak optimal idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF199RLG, ENCFF419RSJ, ENCFF746RGD, ENCFF818SJJ 74167 ENCODE Processing Pipeline cbe0e73651b1880ef7a264ef6ab07a86 https://www.encodeproject.org/files/ENCFF357ZHI/@@download/ENCFF357ZHI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF415YZA bigBed narrowPeak optimal idr thresholded peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF357ZHI 198199 ENCODE Processing Pipeline 1c0ca81ebda3153a25b821218f6186e8 https://www.encodeproject.org/files/ENCFF415YZA/@@download/ENCFF415YZA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF999JFC fastq reads ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF179CUG 1863118742 Michael Snyder, Stanford 15db3afbc85032c8f0f8891fff93b82c SRA:SRR5112319 https://www.encodeproject.org/files/ENCFF999JFC/@@download/ENCFF999JFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF053VVJ fastq reads ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF474NQE 3149546719 Michael Snyder, Stanford c71eb0d6dbcd04c47b3179d9ec91fa83 SRA:SRR5112320 https://www.encodeproject.org/files/ENCFF053VVJ/@@download/ENCFF053VVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF474NQE fastq reads ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF053VVJ 3225488883 Michael Snyder, Stanford 5a7f82024d24168549f3a10dcda9f5a4 SRA:SRR5112320 https://www.encodeproject.org/files/ENCFF474NQE/@@download/ENCFF474NQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF179CUG fastq reads ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF999JFC 1923711313 Michael Snyder, Stanford f7f0feb05161891480158955bdc77b8e SRA:SRR5112319 https://www.encodeproject.org/files/ENCFF179CUG/@@download/ENCFF179CUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF959FOS bam unfiltered alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF179CUG, ENCFF643CGH, ENCFF999JFC 4214510670 ENCODE Processing Pipeline 0c9fa694da4459e37bf40969ddc9232d https://www.encodeproject.org/files/ENCFF959FOS/@@download/ENCFF959FOS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF031BPN bam unfiltered alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF179CUG, ENCFF807MUK, ENCFF999JFC 4210336407 ENCODE Processing Pipeline 79b8a3dc6bdd3705fc094d9a8656618d https://www.encodeproject.org/files/ENCFF031BPN/@@download/ENCFF031BPN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF225TQR bam unfiltered alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF053VVJ, ENCFF474NQE, ENCFF643CGH 6928919564 ENCODE Processing Pipeline 7f24e6ef2b41f42d8bffd52adc30078c https://www.encodeproject.org/files/ENCFF225TQR/@@download/ENCFF225TQR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF097CBF bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF179CUG, ENCFF643CGH, ENCFF999JFC 3687526702 ENCODE Processing Pipeline ce1d2e5f286df24b8034db286f866889 https://www.encodeproject.org/files/ENCFF097CBF/@@download/ENCFF097CBF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF139KFA bam unfiltered alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF053VVJ, ENCFF474NQE, ENCFF807MUK 6922893181 ENCODE Processing Pipeline 020d6ccf5ad9c2dba37fbffb03697c1b https://www.encodeproject.org/files/ENCFF139KFA/@@download/ENCFF139KFA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF750PRY bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF179CUG, ENCFF807MUK, ENCFF999JFC 3686397848 ENCODE Processing Pipeline 82ecb4ff1c574617961c8c50cefe8934 https://www.encodeproject.org/files/ENCFF750PRY/@@download/ENCFF750PRY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF493ODC bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF053VVJ, ENCFF474NQE, ENCFF643CGH 5744763242 ENCODE Processing Pipeline 21fa966d2110f20b35a57bae72cb975f https://www.encodeproject.org/files/ENCFF493ODC/@@download/ENCFF493ODC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF256NAK bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF053VVJ, ENCFF474NQE, ENCFF807MUK 5742206415 ENCODE Processing Pipeline 2f98db7e03b5838d58c7012e2529c161 https://www.encodeproject.org/files/ENCFF256NAK/@@download/ENCFF256NAK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF408JCQ bigWig signal p-value ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750PRY 1277726106 ENCODE Processing Pipeline c4ed4e61710151d134a46f0c540c002e https://www.encodeproject.org/files/ENCFF408JCQ/@@download/ENCFF408JCQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF787MOX bigWig signal p-value ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF256NAK 1327543767 ENCODE Processing Pipeline d98a777dbf6906c5cfc474c4999295db https://www.encodeproject.org/files/ENCFF787MOX/@@download/ENCFF787MOX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF668CUL bigWig signal p-value ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF256NAK, ENCFF750PRY 1951077974 ENCODE Processing Pipeline 4e25206ace821920cdc91a52b27f120c https://www.encodeproject.org/files/ENCFF668CUL/@@download/ENCFF668CUL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF562USH bigWig fold change over control ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750PRY 1232788351 ENCODE Processing Pipeline fbed27c9bed44c3975cf5314388865ca https://www.encodeproject.org/files/ENCFF562USH/@@download/ENCFF562USH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF405SFC bigWig fold change over control ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF256NAK 1503733640 ENCODE Processing Pipeline f425f65d35e35c78f8d94c34400fa5f3 https://www.encodeproject.org/files/ENCFF405SFC/@@download/ENCFF405SFC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF889DJS bigWig fold change over control ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF256NAK, ENCFF750PRY 1969061740 ENCODE Processing Pipeline b04e37629c4ed817a61924c4de615e8b https://www.encodeproject.org/files/ENCFF889DJS/@@download/ENCFF889DJS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF426WFT bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750PRY 6858851 ENCODE Processing Pipeline 4315db5cfb8218bfcb764a3ecd823bfa https://www.encodeproject.org/files/ENCFF426WFT/@@download/ENCFF426WFT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF583DZG bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF256NAK, ENCFF750PRY 7205669 ENCODE Processing Pipeline 307f2698fe60b7a5bde8e0d9cf310d0d https://www.encodeproject.org/files/ENCFF583DZG/@@download/ENCFF583DZG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF738DAC bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF256NAK 7074107 ENCODE Processing Pipeline 31f2a519963582541a7a19654e782749 https://www.encodeproject.org/files/ENCFF738DAC/@@download/ENCFF738DAC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF530KKY bigBed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF426WFT 13369487 ENCODE Processing Pipeline afa9c99cd17a932c3048dde524b64c62 https://www.encodeproject.org/files/ENCFF530KKY/@@download/ENCFF530KKY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF106NKI bigBed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF738DAC 13215024 ENCODE Processing Pipeline 9579ee6e30ba82361de2255c9a7bbf0c https://www.encodeproject.org/files/ENCFF106NKI/@@download/ENCFF106NKI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF438SVC bigBed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF583DZG 13113860 ENCODE Processing Pipeline ef87539c4a758a4b85eebc4203e26dcf https://www.encodeproject.org/files/ENCFF438SVC/@@download/ENCFF438SVC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF551DVX bed narrowPeak conservative idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF426WFT, ENCFF583DZG, ENCFF738DAC 450126 ENCODE Processing Pipeline 558e6b408de57eb12d00816e0ad7cc85 https://www.encodeproject.org/files/ENCFF551DVX/@@download/ENCFF551DVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF268UDU bigBed narrowPeak conservative idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF551DVX 940770 ENCODE Processing Pipeline 59fbe295456e8e225407b56e5a6f16fe https://www.encodeproject.org/files/ENCFF268UDU/@@download/ENCFF268UDU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF267HPJ bed narrowPeak optimal idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF426WFT, ENCFF583DZG, ENCFF738DAC 508294 ENCODE Processing Pipeline 58199100dead9720f733ea53a365ecd3 https://www.encodeproject.org/files/ENCFF267HPJ/@@download/ENCFF267HPJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF411VCA bigBed narrowPeak optimal idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF267HPJ 1031863 ENCODE Processing Pipeline 3b444a14f78d667e861bdcc8cd3c5070 https://www.encodeproject.org/files/ENCFF411VCA/@@download/ENCFF411VCA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF496CYA bigWig signal p-value ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF493ODC 1294033282 ENCODE Processing Pipeline 4fa2f0046e45c897df22411c0d794233 https://www.encodeproject.org/files/ENCFF496CYA/@@download/ENCFF496CYA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF280YPK bigWig signal p-value ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097CBF 1287347028 ENCODE Processing Pipeline 802c73dac80d465b375689053bf58ac6 https://www.encodeproject.org/files/ENCFF280YPK/@@download/ENCFF280YPK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF031EAG bigWig fold change over control ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF097CBF, ENCFF493ODC 1940275722 ENCODE Processing Pipeline c48b62b5cb7b5529e19a421640ad8200 https://www.encodeproject.org/files/ENCFF031EAG/@@download/ENCFF031EAG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF090WEZ bigWig signal p-value ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF097CBF, ENCFF493ODC 1924233340 ENCODE Processing Pipeline 4523a70103b757c733d02ac4f5403114 https://www.encodeproject.org/files/ENCFF090WEZ/@@download/ENCFF090WEZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF875GIG bigWig fold change over control ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097CBF 1214700710 ENCODE Processing Pipeline 751ebc8c972d6ec7d30b01af2de112bc https://www.encodeproject.org/files/ENCFF875GIG/@@download/ENCFF875GIG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF439ENU bigWig fold change over control ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF493ODC 1503539635 ENCODE Processing Pipeline 08e3713b1842a178054ca61fe7f528e9 https://www.encodeproject.org/files/ENCFF439ENU/@@download/ENCFF439ENU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF054QHQ bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097CBF 6772009 ENCODE Processing Pipeline 017c5f57bbf01ce8e56706f550926f5b https://www.encodeproject.org/files/ENCFF054QHQ/@@download/ENCFF054QHQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF386SWY bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF493ODC 7058286 ENCODE Processing Pipeline 0eb5f2f800ca062cb3d2f785a2240808 https://www.encodeproject.org/files/ENCFF386SWY/@@download/ENCFF386SWY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF105VSU bigBed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF054QHQ 13393605 ENCODE Processing Pipeline 66299227df91cf7dc934ee9ba6deea76 https://www.encodeproject.org/files/ENCFF105VSU/@@download/ENCFF105VSU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF396WNJ bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF097CBF, ENCFF493ODC 7219043 ENCODE Processing Pipeline dda425fce18476a05c207d3434931d23 https://www.encodeproject.org/files/ENCFF396WNJ/@@download/ENCFF396WNJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF529OFN bigBed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF396WNJ 13158297 ENCODE Processing Pipeline 3d354934b309becfb8440c0a8a60fe2f https://www.encodeproject.org/files/ENCFF529OFN/@@download/ENCFF529OFN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF572OEF bed narrowPeak optimal idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF054QHQ, ENCFF386SWY, ENCFF396WNJ, ENCFF419RSJ 517418 ENCODE Processing Pipeline d2f2a1ca36446d83d5b8ce9a9d2a878c https://www.encodeproject.org/files/ENCFF572OEF/@@download/ENCFF572OEF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF032XIG bed narrowPeak conservative idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF054QHQ, ENCFF386SWY, ENCFF396WNJ, ENCFF419RSJ 456771 ENCODE Processing Pipeline 872b36798f3c660066f3100a07213858 https://www.encodeproject.org/files/ENCFF032XIG/@@download/ENCFF032XIG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF833UXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF032XIG 949563 ENCODE Processing Pipeline ae738384d189a232366e5caa819ddb20 https://www.encodeproject.org/files/ENCFF833UXZ/@@download/ENCFF833UXZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF253NQN bigBed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF386SWY 13268845 ENCODE Processing Pipeline 626d18a3eca5d0c2620f6d58b52048ee https://www.encodeproject.org/files/ENCFF253NQN/@@download/ENCFF253NQN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF513RMI bigBed narrowPeak optimal idr thresholded peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF572OEF 1045395 ENCODE Processing Pipeline e72a1a63b205f121460984f61b50462f https://www.encodeproject.org/files/ENCFF513RMI/@@download/ENCFF513RMI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF434UEL bam unfiltered alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 36 ENCFF002EWG, ENCFF807MUK 1203969862 ENCODE Processing Pipeline ffb87e31ee46e5a48a713e3424c72ead https://www.encodeproject.org/files/ENCFF434UEL/@@download/ENCFF434UEL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF615LBT bam unfiltered alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 36 ENCFF002EWF, ENCFF807MUK 995129011 ENCODE Processing Pipeline de9a20284377b1640e99beaf34535494 https://www.encodeproject.org/files/ENCFF615LBT/@@download/ENCFF615LBT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EWF fastq reads ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 1 36 single-ended 842918646 Michael Snyder, Stanford 442370035d630e8a37997ff87d43e075 SRA:SRR5112271 https://www.encodeproject.org/files/ENCFF002EWF/@@download/ENCFF002EWF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EWG fastq reads ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 1 36 single-ended 1000439655 Michael Snyder, Stanford a85af88c7aeead3f1d5a2d3cd21c5632 SRA:SRR5112272 https://www.encodeproject.org/files/ENCFF002EWG/@@download/ENCFF002EWG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF621GUP bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF002EWG, ENCFF807MUK 782896574 ENCODE Processing Pipeline fdfe928eab43a8ed1923060998354902 https://www.encodeproject.org/files/ENCFF621GUP/@@download/ENCFF621GUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF708LOC bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF002EWF, ENCFF807MUK 588455376 ENCODE Processing Pipeline f4a3889c1f863acac74a4bfb48cc77ba https://www.encodeproject.org/files/ENCFF708LOC/@@download/ENCFF708LOC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF364VIS bigWig signal p-value ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF335IPE, ENCFF708LOC 597751208 ENCODE Processing Pipeline d35586a7e5e5f84050187de7fead98c0 https://www.encodeproject.org/files/ENCFF364VIS/@@download/ENCFF364VIS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF377WKS bigWig signal p-value ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF621GUP, ENCFF879OQC 596342792 ENCODE Processing Pipeline ed0ce2abbc2957a5a5d6b129dfafdd56 https://www.encodeproject.org/files/ENCFF377WKS/@@download/ENCFF377WKS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF300IOF bigWig fold change over control ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF335IPE, ENCFF708LOC 304291885 ENCODE Processing Pipeline c1dc4a908af8cd3d8f16818cfeef1b2d https://www.encodeproject.org/files/ENCFF300IOF/@@download/ENCFF300IOF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF257YKB bigWig fold change over control ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF335IPE, ENCFF621GUP, ENCFF708LOC, ENCFF879OQC 872995416 ENCODE Processing Pipeline 6be9eeecc3c8b86762558bc985b51ab4 https://www.encodeproject.org/files/ENCFF257YKB/@@download/ENCFF257YKB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF041EID bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF335IPE, ENCFF708LOC 3776183 ENCODE Processing Pipeline fef6dda7aa2bb57a75863df1649746b9 https://www.encodeproject.org/files/ENCFF041EID/@@download/ENCFF041EID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF248AZH bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF621GUP, ENCFF879OQC 4746442 ENCODE Processing Pipeline 920cb17166e327ea21f13d89051b2cd1 https://www.encodeproject.org/files/ENCFF248AZH/@@download/ENCFF248AZH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF703JKU bigBed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF041EID 8472549 ENCODE Processing Pipeline 86b08f6e94f4d862aeca72c0c3e5f75b https://www.encodeproject.org/files/ENCFF703JKU/@@download/ENCFF703JKU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF751SBQ bigWig signal p-value ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF335IPE, ENCFF621GUP, ENCFF708LOC, ENCFF879OQC 1012517731 ENCODE Processing Pipeline dc7da8bef18dbe4ef3d4b9b134468e07 https://www.encodeproject.org/files/ENCFF751SBQ/@@download/ENCFF751SBQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF580ZHQ bigWig fold change over control ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF621GUP, ENCFF879OQC 435275595 ENCODE Processing Pipeline f30f94fc52fd9d8fa31d09999d8caf6d https://www.encodeproject.org/files/ENCFF580ZHQ/@@download/ENCFF580ZHQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF133TIH bed narrowPeak conservative idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF041EID, ENCFF248AZH, ENCFF469ORR 12028 ENCODE Processing Pipeline 15e62804318fd046a39e2b6f1070160a https://www.encodeproject.org/files/ENCFF133TIH/@@download/ENCFF133TIH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF597DIY bed narrowPeak optimal idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF041EID, ENCFF248AZH, ENCFF469ORR 20168 ENCODE Processing Pipeline 23fbea40b5d67edb1d62e497fbf80945 https://www.encodeproject.org/files/ENCFF597DIY/@@download/ENCFF597DIY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF861HZJ bigBed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF248AZH 11020136 ENCODE Processing Pipeline 2b44695fa29a4d4f4316b1ff9c3c1b8b https://www.encodeproject.org/files/ENCFF861HZJ/@@download/ENCFF861HZJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF230JVQ bigBed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF469ORR 11489211 ENCODE Processing Pipeline ad265ec9533f3a2954dd0d47529f322b https://www.encodeproject.org/files/ENCFF230JVQ/@@download/ENCFF230JVQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF469ORR bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF335IPE, ENCFF621GUP, ENCFF708LOC, ENCFF879OQC 5411942 ENCODE Processing Pipeline 475b1cc58fd630bdb84cb1586163e4a7 https://www.encodeproject.org/files/ENCFF469ORR/@@download/ENCFF469ORR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF615IQF bigBed narrowPeak conservative idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF133TIH 72460 ENCODE Processing Pipeline cbf92ada7f544043868836ff74862d1c https://www.encodeproject.org/files/ENCFF615IQF/@@download/ENCFF615IQF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF583GOX bigBed narrowPeak optimal idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF597DIY 77137 ENCODE Processing Pipeline 2bef4c66b667068ad71939344b276aa6 https://www.encodeproject.org/files/ENCFF583GOX/@@download/ENCFF583GOX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF577XSW bam unfiltered alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 36 ENCFF002EWG, ENCFF643CGH 1209366677 ENCODE Processing Pipeline 3bd170f3b03039b475c3ec9b03610f9f https://www.encodeproject.org/files/ENCFF577XSW/@@download/ENCFF577XSW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF844AWP bam unfiltered alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 36 ENCFF002EWF, ENCFF643CGH 999600246 ENCODE Processing Pipeline b3827fe0d40c7a43b5bd3bf2c4f7f61c https://www.encodeproject.org/files/ENCFF844AWP/@@download/ENCFF844AWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF384WCY bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 36 ENCFF002EWG, ENCFF643CGH 782324033 ENCODE Processing Pipeline 4dfa8c3dd51b0e66fba53614770a2b40 https://www.encodeproject.org/files/ENCFF384WCY/@@download/ENCFF384WCY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF417HNM bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 36 ENCFF002EWF, ENCFF643CGH 588147537 ENCODE Processing Pipeline 2771d3024927f57a1e507381718c73ec https://www.encodeproject.org/files/ENCFF417HNM/@@download/ENCFF417HNM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF380XDE bigWig signal p-value ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF156FED, ENCFF417HNM 478311736 ENCODE Processing Pipeline 313febd91c6f6fcacbecbd056501d6a3 https://www.encodeproject.org/files/ENCFF380XDE/@@download/ENCFF380XDE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF623HXC bigWig signal p-value ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF384WCY, ENCFF577FNG 537377957 ENCODE Processing Pipeline efabf0778157dc485a64f8f43bbfed7b https://www.encodeproject.org/files/ENCFF623HXC/@@download/ENCFF623HXC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF136ZHB bigWig signal p-value ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF156FED, ENCFF384WCY, ENCFF417HNM, ENCFF577FNG 1101038545 ENCODE Processing Pipeline 7188a375f9c0706dffbc0700c70c90a6 https://www.encodeproject.org/files/ENCFF136ZHB/@@download/ENCFF136ZHB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF719CVQ bigWig fold change over control ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF156FED, ENCFF417HNM 303943831 ENCODE Processing Pipeline d3027ca747da24dce7dfc835fded2143 https://www.encodeproject.org/files/ENCFF719CVQ/@@download/ENCFF719CVQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF420XTO bigWig fold change over control ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF384WCY, ENCFF577FNG 438131765 ENCODE Processing Pipeline 0bf30cec64200b4a8b7239ea719a8f41 https://www.encodeproject.org/files/ENCFF420XTO/@@download/ENCFF420XTO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF656SAU bigWig fold change over control ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF156FED, ENCFF384WCY, ENCFF417HNM, ENCFF577FNG 808911650 ENCODE Processing Pipeline da8efc7969e7553061d27265b76faa44 https://www.encodeproject.org/files/ENCFF656SAU/@@download/ENCFF656SAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF941TIL bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF156FED, ENCFF417HNM 3653464 ENCODE Processing Pipeline 6770de3c57d497643b8af49cb3c3cdf5 https://www.encodeproject.org/files/ENCFF941TIL/@@download/ENCFF941TIL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF404UQP bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF384WCY, ENCFF577FNG 4530743 ENCODE Processing Pipeline 64ab67e5c3dbc0c3f576f2ecb615aa36 https://www.encodeproject.org/files/ENCFF404UQP/@@download/ENCFF404UQP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF944RLM bigBed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF941TIL 8189942 ENCODE Processing Pipeline 7c271bafe015e046910891540154e593 https://www.encodeproject.org/files/ENCFF944RLM/@@download/ENCFF944RLM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF055TID bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF156FED, ENCFF384WCY, ENCFF417HNM, ENCFF577FNG 5155110 ENCODE Processing Pipeline 77dfe32ba31c0492e569913b23d714bb https://www.encodeproject.org/files/ENCFF055TID/@@download/ENCFF055TID.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF786CCA bigBed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF404UQP 10830630 ENCODE Processing Pipeline c243f7fef0aeaeab838c7e93f0c34db7 https://www.encodeproject.org/files/ENCFF786CCA/@@download/ENCFF786CCA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF061JCP bigBed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF055TID 11404973 ENCODE Processing Pipeline 53fc429006d186edd693efde38ad866c https://www.encodeproject.org/files/ENCFF061JCP/@@download/ENCFF061JCP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF953ZSO bed narrowPeak conservative idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF055TID, ENCFF404UQP, ENCFF419RSJ, ENCFF941TIL 12401 ENCODE Processing Pipeline 37ac6d6b1b1ffaae569fc32783c9e2ce https://www.encodeproject.org/files/ENCFF953ZSO/@@download/ENCFF953ZSO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF438MHO bigBed narrowPeak conservative idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF953ZSO 73052 ENCODE Processing Pipeline 1cadc801f6790364506dc9d25d11f489 https://www.encodeproject.org/files/ENCFF438MHO/@@download/ENCFF438MHO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF526PMI bed narrowPeak optimal idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF055TID, ENCFF404UQP, ENCFF419RSJ, ENCFF941TIL 21193 ENCODE Processing Pipeline 69fd6d6fa35b80f8d160e562391c7d70 https://www.encodeproject.org/files/ENCFF526PMI/@@download/ENCFF526PMI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF368CEK bigBed narrowPeak optimal idr thresholded peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF526PMI 78735 ENCODE Processing Pipeline a8a98af9211ff78e838082b1285d2c04 https://www.encodeproject.org/files/ENCFF368CEK/@@download/ENCFF368CEK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF359OBA fastq reads ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF452DQU 2180894887 Michael Snyder, Stanford 19b035fb7071e1f726df81e7ba16014c SRA:SRR6213604 https://www.encodeproject.org/files/ENCFF359OBA/@@download/ENCFF359OBA.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released borderline replicate concordance, antibody characterized with exemption ENCFF060IWY fastq reads ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF006IUL 3101716987 Michael Snyder, Stanford ca3ed5d6ca6e38876583055efff87697 SRA:SRR6213605 https://www.encodeproject.org/files/ENCFF060IWY/@@download/ENCFF060IWY.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released borderline replicate concordance, antibody characterized with exemption ENCFF452DQU fastq reads ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF359OBA 1886547812 Michael Snyder, Stanford ff32be788def421d5514f57e48b71d5b SRA:SRR6213604 https://www.encodeproject.org/files/ENCFF452DQU/@@download/ENCFF452DQU.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released borderline replicate concordance, antibody characterized with exemption ENCFF006IUL fastq reads ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF060IWY 3797902553 Michael Snyder, Stanford c55ac9c5e7b78591c2346dca95985244 SRA:SRR6213605 https://www.encodeproject.org/files/ENCFF006IUL/@@download/ENCFF006IUL.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released borderline replicate concordance, antibody characterized with exemption ENCFF875CHB bam unfiltered alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 100 ENCFF359OBA, ENCFF452DQU, ENCFF643CGH 4262961963 ENCODE Processing Pipeline 3219523e8dbff1d909bf716080e5658a https://www.encodeproject.org/files/ENCFF875CHB/@@download/ENCFF875CHB.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF049AQB bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 100 ENCFF006IUL, ENCFF060IWY, ENCFF807MUK 5641131612 ENCODE Processing Pipeline d226e8966f78346b7d416bea586f86cc https://www.encodeproject.org/files/ENCFF049AQB/@@download/ENCFF049AQB.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF262LCF bam unfiltered alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 100 ENCFF006IUL, ENCFF060IWY, ENCFF643CGH 6820204784 ENCODE Processing Pipeline 503e044a2c05b407feeb83ca00fe70bf https://www.encodeproject.org/files/ENCFF262LCF/@@download/ENCFF262LCF.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF169SEZ bam unfiltered alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 100 ENCFF006IUL, ENCFF060IWY, ENCFF807MUK 6810614745 ENCODE Processing Pipeline bb76adaf4fd04f1c6b32409a115d8e9d https://www.encodeproject.org/files/ENCFF169SEZ/@@download/ENCFF169SEZ.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF302VJW bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 100 ENCFF359OBA, ENCFF452DQU, ENCFF643CGH 3567181329 ENCODE Processing Pipeline 94b29496a3a3e163b8c1b968d9aed302 https://www.encodeproject.org/files/ENCFF302VJW/@@download/ENCFF302VJW.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF950TOD bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 100 ENCFF359OBA, ENCFF452DQU, ENCFF807MUK 3565488678 ENCODE Processing Pipeline 84851c76cba7adb445363f0207525424 https://www.encodeproject.org/files/ENCFF950TOD/@@download/ENCFF950TOD.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF690FBC bam unfiltered alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 100 ENCFF359OBA, ENCFF452DQU, ENCFF807MUK 4255641014 ENCODE Processing Pipeline 568d1dc41ed6de46bf10d891709c7ebe https://www.encodeproject.org/files/ENCFF690FBC/@@download/ENCFF690FBC.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF594ICG bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 100 ENCFF006IUL, ENCFF060IWY, ENCFF643CGH 5643593730 ENCODE Processing Pipeline 785c8a0fc07b7f0ed87f835cbbafce2b https://www.encodeproject.org/files/ENCFF594ICG/@@download/ENCFF594ICG.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF942QWW bigWig signal p-value ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN 1843319955 ENCODE Processing Pipeline 0c19bebd504709ca9e4be1b5ec7ef9d8 https://www.encodeproject.org/files/ENCFF942QWW/@@download/ENCFF942QWW.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF612YLZ bigWig signal p-value ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 2394705092 ENCODE Processing Pipeline fbd748f6a4ef4298110f42de7620adbe https://www.encodeproject.org/files/ENCFF612YLZ/@@download/ENCFF612YLZ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF513PRA bigWig fold change over control ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN 2003891734 ENCODE Processing Pipeline 46873162fc2d1661c9201128e45e69de https://www.encodeproject.org/files/ENCFF513PRA/@@download/ENCFF513PRA.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF962ENE bigWig signal p-value ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 1673259259 ENCODE Processing Pipeline 80e34d2ffcae1d94eca8dbc533a60b6f https://www.encodeproject.org/files/ENCFF962ENE/@@download/ENCFF962ENE.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF288CPP bigWig fold change over control ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 1603731434 ENCODE Processing Pipeline 34ad63e52e123cb8fd6107cd1a5d5387 https://www.encodeproject.org/files/ENCFF288CPP/@@download/ENCFF288CPP.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF316LNT bigWig fold change over control ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 2385991414 ENCODE Processing Pipeline 337575fd314d3ad182489952b5d4f9ee https://www.encodeproject.org/files/ENCFF316LNT/@@download/ENCFF316LNT.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF948KJG bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN 7040849 ENCODE Processing Pipeline f888673eb04bb67b9a39cdfcb5bc7dab https://www.encodeproject.org/files/ENCFF948KJG/@@download/ENCFF948KJG.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF824QDV bed narrowPeak conservative idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF325LIS, ENCFF420XDI, ENCFF948KJG 41409 ENCODE Processing Pipeline 5e59c865a73f8db3ec935e9978106e44 https://www.encodeproject.org/files/ENCFF824QDV/@@download/ENCFF824QDV.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF677VRW bigBed narrowPeak conservative idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF824QDV 133919 ENCODE Processing Pipeline dddafab42c46d995e14ce4b3b901be84 https://www.encodeproject.org/files/ENCFF677VRW/@@download/ENCFF677VRW.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF420XDI bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 6667865 ENCODE Processing Pipeline 9ec7ca1566919e30b2841a7725753218 https://www.encodeproject.org/files/ENCFF420XDI/@@download/ENCFF420XDI.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF325LIS bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 7237009 ENCODE Processing Pipeline 58525cfe946a38b623c876af00b4d6ce https://www.encodeproject.org/files/ENCFF325LIS/@@download/ENCFF325LIS.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF237XUY bigBed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF948KJG 11053877 ENCODE Processing Pipeline b62eee9c98b35de647b32114d67a8335 https://www.encodeproject.org/files/ENCFF237XUY/@@download/ENCFF237XUY.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF525VQH bigBed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF420XDI 11219616 ENCODE Processing Pipeline 5be5f1389a5bec8096294d3e43fcc967 https://www.encodeproject.org/files/ENCFF525VQH/@@download/ENCFF525VQH.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF686MYV bigBed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF325LIS 13076829 ENCODE Processing Pipeline 5e0b0c104f3c8f9e7093746343e78fb4 https://www.encodeproject.org/files/ENCFF686MYV/@@download/ENCFF686MYV.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF215JSR bigBed narrowPeak optimal idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF763AAE 169381 ENCODE Processing Pipeline 7128764746453465c05dcfea0d4548a6 https://www.encodeproject.org/files/ENCFF215JSR/@@download/ENCFF215JSR.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF763AAE bed narrowPeak optimal idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF325LIS, ENCFF420XDI, ENCFF948KJG 62705 ENCODE Processing Pipeline ec725059665594e94aa84a79c6e18af9 https://www.encodeproject.org/files/ENCFF763AAE/@@download/ENCFF763AAE.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF058FRW bigWig signal p-value ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF302VJW, ENCFF705ARK, ENCFF802NAW 1480207319 ENCODE Processing Pipeline 8254b141dda29ca7a162ae1d869d9124 https://www.encodeproject.org/files/ENCFF058FRW/@@download/ENCFF058FRW.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF080HCR bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF302VJW, ENCFF594ICG, ENCFF705ARK, ENCFF802NAW 7238021 ENCODE Processing Pipeline e81343a0cb8d77f1eb66c7a1cc101298 https://www.encodeproject.org/files/ENCFF080HCR/@@download/ENCFF080HCR.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF764HAA bigBed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF358TXN 11058712 ENCODE Processing Pipeline a1aadb2cc908fcf15c18d47ee9a4b997 https://www.encodeproject.org/files/ENCFF764HAA/@@download/ENCFF764HAA.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF715GAF bigBed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF235SNV 11235058 ENCODE Processing Pipeline b19427feb431628f3144ce82d9a72884 https://www.encodeproject.org/files/ENCFF715GAF/@@download/ENCFF715GAF.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF183YHV bed narrowPeak conservative idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF080HCR, ENCFF235SNV, ENCFF358TXN, ENCFF419RSJ 40432 ENCODE Processing Pipeline 0318574c693e3b4a267de8fcba0af5aa https://www.encodeproject.org/files/ENCFF183YHV/@@download/ENCFF183YHV.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF113ZKD bigBed narrowPeak optimal idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF128WXR 172883 ENCODE Processing Pipeline b50bc58a53a0657f7ad1c9fdbb2837c1 https://www.encodeproject.org/files/ENCFF113ZKD/@@download/ENCFF113ZKD.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF172XLX bigBed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF080HCR 13083587 ENCODE Processing Pipeline d24c9310d08a382e1392efecd5c165f9 https://www.encodeproject.org/files/ENCFF172XLX/@@download/ENCFF172XLX.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF052QJD bigWig fold change over control ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF302VJW, ENCFF705ARK, ENCFF802NAW 1612948941 ENCODE Processing Pipeline 705c4bb93dfcacf453d3daff09f9be6e https://www.encodeproject.org/files/ENCFF052QJD/@@download/ENCFF052QJD.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF037HJZ bigWig signal p-value ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF594ICG, ENCFF705ARK, ENCFF802NAW 2009479108 ENCODE Processing Pipeline 02f8d008fe178951b73590516f84c203 https://www.encodeproject.org/files/ENCFF037HJZ/@@download/ENCFF037HJZ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF816GUK bigWig fold change over control ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF594ICG, ENCFF705ARK, ENCFF802NAW 1978068832 ENCODE Processing Pipeline 17c875cb01cacc774cc4485e8fa69cd0 https://www.encodeproject.org/files/ENCFF816GUK/@@download/ENCFF816GUK.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF358TXN bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF594ICG, ENCFF705ARK, ENCFF802NAW 7039784 ENCODE Processing Pipeline cf2863ce72b5df7097f93460d23399ea https://www.encodeproject.org/files/ENCFF358TXN/@@download/ENCFF358TXN.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF814WEL bigWig fold change over control ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF302VJW, ENCFF594ICG, ENCFF705ARK, ENCFF802NAW 2406313572 ENCODE Processing Pipeline 3690f1ace393449291cdbb251f7f431b https://www.encodeproject.org/files/ENCFF814WEL/@@download/ENCFF814WEL.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF235SNV bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF302VJW, ENCFF705ARK, ENCFF802NAW 6664525 ENCODE Processing Pipeline d111e383f8e203d5c9386c749a849e42 https://www.encodeproject.org/files/ENCFF235SNV/@@download/ENCFF235SNV.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF169SBD bigBed narrowPeak conservative idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF183YHV 132526 ENCODE Processing Pipeline 929c20a02e4b6a85149ddfcaff62f1ab https://www.encodeproject.org/files/ENCFF169SBD/@@download/ENCFF169SBD.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF128WXR bed narrowPeak optimal idr thresholded peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF080HCR, ENCFF235SNV, ENCFF358TXN, ENCFF419RSJ 65081 ENCODE Processing Pipeline 7ea88c97811bf49fb6574c5751725e28 https://www.encodeproject.org/files/ENCFF128WXR/@@download/ENCFF128WXR.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF109QKZ bigWig signal p-value ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF302VJW, ENCFF594ICG, ENCFF705ARK, ENCFF802NAW 2256030303 ENCODE Processing Pipeline 0dcfbb869affb8876d848c3937760a7e https://www.encodeproject.org/files/ENCFF109QKZ/@@download/ENCFF109QKZ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF525AYL fastq reads ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 2 36 single-ended 1235917367 Bradley Bernstein, Broad 0d427ced85cca73d2e313c1146fa9033 https://www.encodeproject.org/files/ENCFF525AYL/@@download/ENCFF525AYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF761GFN fastq reads ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 1 30 single-ended 578175431 Bradley Bernstein, Broad 9b944dbe073d126c09d39b2628525159 https://www.encodeproject.org/files/ENCFF761GFN/@@download/ENCFF761GFN.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF210PXS fastq reads ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 1 36 single-ended 1076504189 Bradley Bernstein, Broad 34e772e69e41f9418d12ad568d1d50be https://www.encodeproject.org/files/ENCFF210PXS/@@download/ENCFF210PXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF434DNU bam unfiltered alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 36 ENCFF210PXS, ENCFF525AYL, ENCFF807MUK 2900342534 ENCODE Processing Pipeline 61c4a5cab2041de3fbaa718e7da84c18 https://www.encodeproject.org/files/ENCFF434DNU/@@download/ENCFF434DNU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF869ZUY bam unfiltered alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 36 ENCFF210PXS, ENCFF525AYL, ENCFF643CGH 2914891233 ENCODE Processing Pipeline 3646b0a0c8a40d18243d460048b13f1c https://www.encodeproject.org/files/ENCFF869ZUY/@@download/ENCFF869ZUY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF557TAR bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 36 ENCFF210PXS, ENCFF525AYL, ENCFF807MUK 1943985687 ENCODE Processing Pipeline 6619db585acbec4be37e4f0e751bc190 https://www.encodeproject.org/files/ENCFF557TAR/@@download/ENCFF557TAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF412JUX bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 36 ENCFF210PXS, ENCFF525AYL, ENCFF643CGH 1943361094 ENCODE Processing Pipeline de43e7682ec1bff389857f7c3bf8630e https://www.encodeproject.org/files/ENCFF412JUX/@@download/ENCFF412JUX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF861AVI bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 30 ENCFF643CGH, ENCFF761GFN 452256189 ENCODE Processing Pipeline e7a89c78b8d7f35489e20557c5b39002 https://www.encodeproject.org/files/ENCFF861AVI/@@download/ENCFF861AVI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF942BYB bam unfiltered alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 30 ENCFF761GFN, ENCFF807MUK 835833935 ENCODE Processing Pipeline d8b44446f96c5bacb8f42f5beff3fc71 https://www.encodeproject.org/files/ENCFF942BYB/@@download/ENCFF942BYB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF395ONF bam unfiltered alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 30 ENCFF643CGH, ENCFF761GFN 840408116 ENCODE Processing Pipeline f46454770183c84a25a38491ac5fba91 https://www.encodeproject.org/files/ENCFF395ONF/@@download/ENCFF395ONF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF469DXQ bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 30 ENCFF761GFN, ENCFF807MUK 452635177 ENCODE Processing Pipeline d9c08859984f91f3eeffe464dd991b70 https://www.encodeproject.org/files/ENCFF469DXQ/@@download/ENCFF469DXQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF002NRK bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF412JUX, ENCFF645CCA, ENCFF943MYJ 7203508 ENCODE Processing Pipeline df6c0459fd4ff71c6816d316a9dbc5b4 https://www.encodeproject.org/files/ENCFF002NRK/@@download/ENCFF002NRK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF487JIR bigWig fold change over control ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF412JUX, ENCFF645CCA, ENCFF943MYJ 1421332382 ENCODE Processing Pipeline 856fbb95b7d0326433bd64e16f4fb67f https://www.encodeproject.org/files/ENCFF487JIR/@@download/ENCFF487JIR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF617MCH bigWig signal p-value ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF412JUX, ENCFF645CCA, ENCFF861AVI, ENCFF943MYJ 1541385280 ENCODE Processing Pipeline 079afcf2b9cfa6feb15c82179b778057 https://www.encodeproject.org/files/ENCFF617MCH/@@download/ENCFF617MCH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF174AUC bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF412JUX, ENCFF645CCA, ENCFF861AVI, ENCFF943MYJ 7199598 ENCODE Processing Pipeline 55928bf9ea9987c997505a1f3dbd3e92 https://www.encodeproject.org/files/ENCFF174AUC/@@download/ENCFF174AUC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF971PWH bigWig fold change over control ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF412JUX, ENCFF645CCA, ENCFF861AVI, ENCFF943MYJ 1610430139 ENCODE Processing Pipeline 5c7df05b65102cc86e58501d1276fbb0 https://www.encodeproject.org/files/ENCFF971PWH/@@download/ENCFF971PWH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF416FKE bigWig fold change over control ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF645CCA, ENCFF861AVI, ENCFF943MYJ 752854017 ENCODE Processing Pipeline 53ff19bc34b7920c427b4490a16aa536 https://www.encodeproject.org/files/ENCFF416FKE/@@download/ENCFF416FKE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF242AWC bigBed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF002NRK 12602813 ENCODE Processing Pipeline f959efb254a75a0418ce51456d2c521d https://www.encodeproject.org/files/ENCFF242AWC/@@download/ENCFF242AWC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF767BLU bigBed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF444WFD 12683471 ENCODE Processing Pipeline 6ff48f62196bd59fa0ab2a9c4c020aea https://www.encodeproject.org/files/ENCFF767BLU/@@download/ENCFF767BLU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF621PUD bigBed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF174AUC 12501156 ENCODE Processing Pipeline be667f51e461d16da7ab9d2a09b15a1f https://www.encodeproject.org/files/ENCFF621PUD/@@download/ENCFF621PUD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF096EWS bigWig signal p-value ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF412JUX, ENCFF645CCA, ENCFF943MYJ 1354798540 ENCODE Processing Pipeline 92a0e34a26fa47aa8b08cb2648c17f4c https://www.encodeproject.org/files/ENCFF096EWS/@@download/ENCFF096EWS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF444WFD bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF645CCA, ENCFF861AVI, ENCFF943MYJ 6821348 ENCODE Processing Pipeline 04c89caba8204a9a72c55f4a88a140f3 https://www.encodeproject.org/files/ENCFF444WFD/@@download/ENCFF444WFD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF808CXM bed narrowPeak conservative idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF002NRK, ENCFF174AUC, ENCFF419RSJ, ENCFF444WFD 715760 ENCODE Processing Pipeline e4ac8d8cb857b5017a1463fbaec5226d https://www.encodeproject.org/files/ENCFF808CXM/@@download/ENCFF808CXM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF884LQM bigWig signal p-value ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF645CCA, ENCFF861AVI, ENCFF943MYJ 987029852 ENCODE Processing Pipeline c017ff65b95d250bf62100f539adb229 https://www.encodeproject.org/files/ENCFF884LQM/@@download/ENCFF884LQM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF319VHB bigBed narrowPeak conservative idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF808CXM 1724350 ENCODE Processing Pipeline f34cd93b23cca5e316bc538549fcb7c8 https://www.encodeproject.org/files/ENCFF319VHB/@@download/ENCFF319VHB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF638IUM bed narrowPeak optimal idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF002NRK, ENCFF174AUC, ENCFF419RSJ, ENCFF444WFD 725661 ENCODE Processing Pipeline 2d1c3bcfd79950bb4358e9c307577316 https://www.encodeproject.org/files/ENCFF638IUM/@@download/ENCFF638IUM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF023PMC bigBed narrowPeak optimal idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF638IUM 1761816 ENCODE Processing Pipeline d82d32a7a2a6e165a237bf205dfdee02 https://www.encodeproject.org/files/ENCFF023PMC/@@download/ENCFF023PMC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF970XCM bigWig fold change over control ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF165PBN, ENCFF557TAR, ENCFF705NOL 1414533068 ENCODE Processing Pipeline e4e88ec6706bee712bb3a55985a31d71 https://www.encodeproject.org/files/ENCFF970XCM/@@download/ENCFF970XCM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF353IJI bigWig signal p-value ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF165PBN, ENCFF469DXQ, ENCFF705NOL 1047053164 ENCODE Processing Pipeline 0d3d0cda5da3d2c1ac3e5c7d3a1e56ac https://www.encodeproject.org/files/ENCFF353IJI/@@download/ENCFF353IJI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF048DUF bigWig signal p-value ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF165PBN, ENCFF469DXQ, ENCFF557TAR, ENCFF705NOL 1513904099 ENCODE Processing Pipeline 94a83fb833b7b283eb8caa896fb2197f https://www.encodeproject.org/files/ENCFF048DUF/@@download/ENCFF048DUF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF939PMC bigWig fold change over control ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF165PBN, ENCFF469DXQ, ENCFF705NOL 752334967 ENCODE Processing Pipeline 089cbb371a404999367099c9ae9714dd https://www.encodeproject.org/files/ENCFF939PMC/@@download/ENCFF939PMC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF893PID bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF165PBN, ENCFF557TAR, ENCFF705NOL 7198060 ENCODE Processing Pipeline 927d0f4b8f7a84d63abe5f7fc78f43de https://www.encodeproject.org/files/ENCFF893PID/@@download/ENCFF893PID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF050AUQ bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF165PBN, ENCFF469DXQ, ENCFF557TAR, ENCFF705NOL 7218015 ENCODE Processing Pipeline cc7e8cf21ee0898a66131c68e10732ee https://www.encodeproject.org/files/ENCFF050AUQ/@@download/ENCFF050AUQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF401OAH bigBed narrowPeak optimal idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF747VMG 1786936 ENCODE Processing Pipeline 3e6263d0b07147b60827eceb666fbca7 https://www.encodeproject.org/files/ENCFF401OAH/@@download/ENCFF401OAH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF578VYU bigBed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF893PID 12600870 ENCODE Processing Pipeline ac197b65a761f895bd07718c9186fcf9 https://www.encodeproject.org/files/ENCFF578VYU/@@download/ENCFF578VYU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF743LGN bigWig signal p-value ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF165PBN, ENCFF557TAR, ENCFF705NOL 1175761272 ENCODE Processing Pipeline 40d2d3c44496332265f9b5bc7e129f38 https://www.encodeproject.org/files/ENCFF743LGN/@@download/ENCFF743LGN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF775KTQ bigWig fold change over control ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF165PBN, ENCFF469DXQ, ENCFF557TAR, ENCFF705NOL 1622578041 ENCODE Processing Pipeline cce636e2d55c1dee90035d3cce2a6302 https://www.encodeproject.org/files/ENCFF775KTQ/@@download/ENCFF775KTQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF995XHS bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF165PBN, ENCFF469DXQ, ENCFF705NOL 6836670 ENCODE Processing Pipeline 22688dc01e004ba4bf430b7fe025ce63 https://www.encodeproject.org/files/ENCFF995XHS/@@download/ENCFF995XHS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF622EFF bigBed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF995XHS 12675250 ENCODE Processing Pipeline 89b5d32c57964dae915d64ce3d741013 https://www.encodeproject.org/files/ENCFF622EFF/@@download/ENCFF622EFF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF366ZOM bigBed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF050AUQ 12522876 ENCODE Processing Pipeline 5f759350a0187dfc066e494f95e38df1 https://www.encodeproject.org/files/ENCFF366ZOM/@@download/ENCFF366ZOM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF835XXH bed narrowPeak conservative idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF001TDO, ENCFF050AUQ, ENCFF893PID, ENCFF995XHS 717188 ENCODE Processing Pipeline 77535b714c3024bf840643ce64994fab https://www.encodeproject.org/files/ENCFF835XXH/@@download/ENCFF835XXH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF550KMB bigBed narrowPeak conservative idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF835XXH 1726928 ENCODE Processing Pipeline d1108d44b813e99238c1574b28b32914 https://www.encodeproject.org/files/ENCFF550KMB/@@download/ENCFF550KMB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF747VMG bed narrowPeak optimal idr thresholded peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1, 2 ENCFF001TDO, ENCFF050AUQ, ENCFF893PID, ENCFF995XHS 739978 ENCODE Processing Pipeline 6a9ad188ce44eb3bf6b46e295d60e8be https://www.encodeproject.org/files/ENCFF747VMG/@@download/ENCFF747VMG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF510UVQ bam unfiltered alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPV, ENCFF002DTR, ENCFF807MUK 5837255179 ENCODE Processing Pipeline 2ade6bc0f400cb9af4a127629a108fcd https://www.encodeproject.org/files/ENCFF510UVQ/@@download/ENCFF510UVQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF317BVF bam unfiltered alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPW, ENCFF002EGJ, ENCFF807MUK 4372278882 ENCODE Processing Pipeline 2c1249f15eee9ac096b2fa6d9b88b41a https://www.encodeproject.org/files/ENCFF317BVF/@@download/ENCFF317BVF.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF002DPV fastq reads ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002DTR 2759838418 Michael Snyder, Stanford 160876cca71bf7bfaabf7758cb7e5fc5 https://www.encodeproject.org/files/ENCFF002DPV/@@download/ENCFF002DPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF002DPW fastq reads ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGJ 1955617507 Michael Snyder, Stanford 2aefd0a7d83a05e1c6b7e2372bf6e6bc https://www.encodeproject.org/files/ENCFF002DPW/@@download/ENCFF002DPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF002DTR fastq reads ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPV 2819989127 Michael Snyder, Stanford a705ee6dd6c8146f19dbfee463069d5a https://www.encodeproject.org/files/ENCFF002DTR/@@download/ENCFF002DTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF002EGJ fastq reads ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPW 1976433286 Michael Snyder, Stanford 2aafa0cbaf177674b513488ad48015b2 https://www.encodeproject.org/files/ENCFF002EGJ/@@download/ENCFF002EGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF078DNG bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPV, ENCFF002DTR, ENCFF807MUK 4376684776 ENCODE Processing Pipeline 55afd8751f6de7bc29e52cc229bccbe2 https://www.encodeproject.org/files/ENCFF078DNG/@@download/ENCFF078DNG.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF086KKL bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPW, ENCFF002EGJ, ENCFF807MUK 3856442292 ENCODE Processing Pipeline 6af75b0c851f1b7fc0c6c1692779e2d0 https://www.encodeproject.org/files/ENCFF086KKL/@@download/ENCFF086KKL.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF256SFJ bigWig signal p-value ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF078DNG 949762275 ENCODE Processing Pipeline c47261aeba1350adc777f74613f3e6ce https://www.encodeproject.org/files/ENCFF256SFJ/@@download/ENCFF256SFJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF341NAU bigWig fold change over control ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF078DNG 1152296502 ENCODE Processing Pipeline e9a35c8a3f8b125a139fc05991b0314a https://www.encodeproject.org/files/ENCFF341NAU/@@download/ENCFF341NAU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF669UBT bam unfiltered alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPW, ENCFF002EGJ, ENCFF643CGH 4381224590 ENCODE Processing Pipeline fbeb9cf033de0445f9069c33c8a0e29c https://www.encodeproject.org/files/ENCFF669UBT/@@download/ENCFF669UBT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF784RRO bam unfiltered alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPV, ENCFF002DTR, ENCFF643CGH 5843862027 ENCODE Processing Pipeline 5f3ba3c67b821244563644ee70b2967c https://www.encodeproject.org/files/ENCFF784RRO/@@download/ENCFF784RRO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF738RYL bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPW, ENCFF002EGJ, ENCFF643CGH 3858906016 ENCODE Processing Pipeline b27538ab48bfec2eb3df7b6fbd416197 https://www.encodeproject.org/files/ENCFF738RYL/@@download/ENCFF738RYL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF250EIC bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPV, ENCFF002DTR, ENCFF643CGH 4380599924 ENCODE Processing Pipeline 194bfb6cd6a9e4118405d59ebdf67832 https://www.encodeproject.org/files/ENCFF250EIC/@@download/ENCFF250EIC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF255IAB bigWig signal p-value ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF738RYL 863373829 ENCODE Processing Pipeline 1f7a431cff730123616ceb101488e707 https://www.encodeproject.org/files/ENCFF255IAB/@@download/ENCFF255IAB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF022UEL bigWig signal p-value ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF250EIC, ENCFF291AFY 1179926281 ENCODE Processing Pipeline 82bac77a973134c083b20303a7ad9acc https://www.encodeproject.org/files/ENCFF022UEL/@@download/ENCFF022UEL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF871XHT bigWig signal p-value ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF250EIC, ENCFF291AFY, ENCFF426RDP, ENCFF738RYL 1907331304 ENCODE Processing Pipeline c60e084b65b534ce4b6220fd2c63a3f4 https://www.encodeproject.org/files/ENCFF871XHT/@@download/ENCFF871XHT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF604RUY bigWig fold change over control ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF738RYL 1045559078 ENCODE Processing Pipeline d64adb2f646756128c238694a9cbe9a2 https://www.encodeproject.org/files/ENCFF604RUY/@@download/ENCFF604RUY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF350PWJ bigWig fold change over control ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF250EIC, ENCFF291AFY 1149693403 ENCODE Processing Pipeline 7d7083587bb5ee961bf7b6447cfde15a https://www.encodeproject.org/files/ENCFF350PWJ/@@download/ENCFF350PWJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF456EBS bigWig fold change over control ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF250EIC, ENCFF291AFY, ENCFF426RDP, ENCFF738RYL 2031399785 ENCODE Processing Pipeline 64e11f23f97e90a8b8b758544385f9b3 https://www.encodeproject.org/files/ENCFF456EBS/@@download/ENCFF456EBS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF426JQF bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF738RYL 5903445 ENCODE Processing Pipeline f47f4e497f1744702783c6ddd3607c99 https://www.encodeproject.org/files/ENCFF426JQF/@@download/ENCFF426JQF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF006QFD bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF250EIC, ENCFF291AFY 5958286 ENCODE Processing Pipeline d346488e072dee9a1a28001b5c4b27d8 https://www.encodeproject.org/files/ENCFF006QFD/@@download/ENCFF006QFD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF918TZK bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF250EIC, ENCFF291AFY, ENCFF426RDP, ENCFF738RYL 7015303 ENCODE Processing Pipeline e8a6c5c6b6a7d17abfa835c04654b43a https://www.encodeproject.org/files/ENCFF918TZK/@@download/ENCFF918TZK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF621EXS bigBed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF918TZK 11318397 ENCODE Processing Pipeline 953bd3b4e28b4bd7f79b695aa19643b7 https://www.encodeproject.org/files/ENCFF621EXS/@@download/ENCFF621EXS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF879XES bigBed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF426JQF 11324035 ENCODE Processing Pipeline 8d3a9803434a5fea2a26158143646385 https://www.encodeproject.org/files/ENCFF879XES/@@download/ENCFF879XES.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF033HMS bigBed narrowPeak optimal idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF873SVI 405711 ENCODE Processing Pipeline cb63156ba85e58c8e0390561595fe4df https://www.encodeproject.org/files/ENCFF033HMS/@@download/ENCFF033HMS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF873SVI bed narrowPeak optimal idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF006QFD, ENCFF419RSJ, ENCFF426JQF, ENCFF918TZK 224086 ENCODE Processing Pipeline 23a3ade6ca9d7b43f4c326383045723e https://www.encodeproject.org/files/ENCFF873SVI/@@download/ENCFF873SVI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF949VJK bigBed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF006QFD 11263651 ENCODE Processing Pipeline 13229caca5e3915cdaaeac6728db73c9 https://www.encodeproject.org/files/ENCFF949VJK/@@download/ENCFF949VJK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF061TPO bigBed narrowPeak conservative idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF821RYS 340462 ENCODE Processing Pipeline dd8a619580694018f7f1818c53866955 https://www.encodeproject.org/files/ENCFF061TPO/@@download/ENCFF061TPO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF821RYS bed narrowPeak conservative idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF006QFD, ENCFF419RSJ, ENCFF426JQF, ENCFF918TZK 173777 ENCODE Processing Pipeline 30d55ec81c92e6cf0989b5c9e220e074 https://www.encodeproject.org/files/ENCFF821RYS/@@download/ENCFF821RYS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF317LHH bigWig signal p-value ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF086KKL, ENCFF583FAG 1099023610 ENCODE Processing Pipeline 73161794f58927d5537c135d957df1d2 https://www.encodeproject.org/files/ENCFF317LHH/@@download/ENCFF317LHH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF775SMB bigWig fold change over control ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF086KKL, ENCFF583FAG 1038228143 ENCODE Processing Pipeline 31d76b40833b4e97279be749d2dbb7a6 https://www.encodeproject.org/files/ENCFF775SMB/@@download/ENCFF775SMB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF011EZA bigWig signal p-value ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF078DNG, ENCFF086KKL, ENCFF583FAG 1868059285 ENCODE Processing Pipeline f2ebd0e1e6b45f1e54067089f4ef7382 https://www.encodeproject.org/files/ENCFF011EZA/@@download/ENCFF011EZA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF956HKO bigWig fold change over control ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF078DNG, ENCFF086KKL, ENCFF583FAG 2010748579 ENCODE Processing Pipeline c86c39882c850cd9e670470a9a271e0e https://www.encodeproject.org/files/ENCFF956HKO/@@download/ENCFF956HKO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF915SCX bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF078DNG, ENCFF086KKL, ENCFF583FAG 7021212 ENCODE Processing Pipeline 7127be0c59594daa3849dee42ec2c8a0 https://www.encodeproject.org/files/ENCFF915SCX/@@download/ENCFF915SCX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF669OUM bigBed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF215LEX 11313517 ENCODE Processing Pipeline 33882d2cffa245a466d7443e221c55de https://www.encodeproject.org/files/ENCFF669OUM/@@download/ENCFF669OUM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF583UVO bigBed narrowPeak conservative idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF502KND 340307 ENCODE Processing Pipeline c014469b9413c48dd9c88c2a328563ba https://www.encodeproject.org/files/ENCFF583UVO/@@download/ENCFF583UVO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF215LEX bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF086KKL, ENCFF583FAG 5904944 ENCODE Processing Pipeline 3b1deac1417cad3a3bbfa2e30cf99293 https://www.encodeproject.org/files/ENCFF215LEX/@@download/ENCFF215LEX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF866PIG bigBed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF915SCX 11311087 ENCODE Processing Pipeline bf076b77fa8d53fd7dd9b1b91f91580e https://www.encodeproject.org/files/ENCFF866PIG/@@download/ENCFF866PIG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF057RCM bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF078DNG 5951493 ENCODE Processing Pipeline a528456c8cd4373a6d1e527b8e668908 https://www.encodeproject.org/files/ENCFF057RCM/@@download/ENCFF057RCM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF946NWK bigBed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF057RCM 11238972 ENCODE Processing Pipeline 6fb376494fffa8e14d008d9f8610609c https://www.encodeproject.org/files/ENCFF946NWK/@@download/ENCFF946NWK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF502KND bed narrowPeak conservative idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF057RCM, ENCFF215LEX, ENCFF915SCX 176188 ENCODE Processing Pipeline e913a5a4bf2dc78edbf6c400c4940f98 https://www.encodeproject.org/files/ENCFF502KND/@@download/ENCFF502KND.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF298VCE bed narrowPeak optimal idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF057RCM, ENCFF215LEX, ENCFF915SCX 229725 ENCODE Processing Pipeline a49314d3746a847846deb7ec319b9564 https://www.encodeproject.org/files/ENCFF298VCE/@@download/ENCFF298VCE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF502GZP bigBed narrowPeak optimal idr thresholded peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF298VCE 409340 ENCODE Processing Pipeline 76c86522d5090a31638f8231994dd124 https://www.encodeproject.org/files/ENCFF502GZP/@@download/ENCFF502GZP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF549SRV fastq reads ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF406DCD 2047206845 Michael Snyder, Stanford 78561b44b37ca371b90838ddee8f5266 SRA:SRR5111686 https://www.encodeproject.org/files/ENCFF549SRV/@@download/ENCFF549SRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF774IKE fastq reads ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF333NBD 1820250313 Michael Snyder, Stanford c207c04bde9e19c6cf300f7998998b87 SRA:SRR5111685 https://www.encodeproject.org/files/ENCFF774IKE/@@download/ENCFF774IKE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF406DCD fastq reads ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF549SRV 2093482456 Michael Snyder, Stanford 1dd09d21dd26d5ef84b47293db1d58f5 SRA:SRR5111686 https://www.encodeproject.org/files/ENCFF406DCD/@@download/ENCFF406DCD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF333NBD fastq reads ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF774IKE 1857975605 Michael Snyder, Stanford bfd859a3b37c40f06baa1f99e011a41b SRA:SRR5111685 https://www.encodeproject.org/files/ENCFF333NBD/@@download/ENCFF333NBD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF742ZYZ bam unfiltered alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF333NBD, ENCFF774IKE, ENCFF807MUK 4007274500 ENCODE Processing Pipeline a8a7de478d3c023ece437f3ae1f790d0 https://www.encodeproject.org/files/ENCFF742ZYZ/@@download/ENCFF742ZYZ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF291AWW bam unfiltered alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF406DCD, ENCFF549SRV, ENCFF807MUK 4486217543 ENCODE Processing Pipeline 5bffcb30c84e635eb4135a069044770a https://www.encodeproject.org/files/ENCFF291AWW/@@download/ENCFF291AWW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF515QKN bam unfiltered alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF333NBD, ENCFF643CGH, ENCFF774IKE 4008946883 ENCODE Processing Pipeline 3e9da3d7ed1fcc48def54819f742d5f8 https://www.encodeproject.org/files/ENCFF515QKN/@@download/ENCFF515QKN.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF422OPY bam unfiltered alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF406DCD, ENCFF549SRV, ENCFF643CGH 4487708004 ENCODE Processing Pipeline 16daa6bef07232e927104649bb5eae17 https://www.encodeproject.org/files/ENCFF422OPY/@@download/ENCFF422OPY.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF970QPM bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF333NBD, ENCFF774IKE, ENCFF807MUK 3095451668 ENCODE Processing Pipeline 62e8f34816d302e69304cf65c1e78092 https://www.encodeproject.org/files/ENCFF970QPM/@@download/ENCFF970QPM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF404VMP bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF333NBD, ENCFF643CGH, ENCFF774IKE 3095828913 ENCODE Processing Pipeline 864dbeb90aa0971e497f9112c3bf0635 https://www.encodeproject.org/files/ENCFF404VMP/@@download/ENCFF404VMP.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF903YHB bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF406DCD, ENCFF549SRV, ENCFF807MUK 3442600053 ENCODE Processing Pipeline 9ea33541f2e867f265617d5ba507d413 https://www.encodeproject.org/files/ENCFF903YHB/@@download/ENCFF903YHB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF221VRH bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF406DCD, ENCFF549SRV, ENCFF643CGH 3443308139 ENCODE Processing Pipeline 7212bb2c421e642db7dd87e58d419c90 https://www.encodeproject.org/files/ENCFF221VRH/@@download/ENCFF221VRH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF663JOX bigWig signal p-value ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF903YHB 1157572656 ENCODE Processing Pipeline 441a3883bb854b5d4aa73391e73996ff https://www.encodeproject.org/files/ENCFF663JOX/@@download/ENCFF663JOX.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF960HGY bigWig signal p-value ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF970QPM 1062700262 ENCODE Processing Pipeline fccd6f18d9d53598fa0cc89609ded6f6 https://www.encodeproject.org/files/ENCFF960HGY/@@download/ENCFF960HGY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF773MRU bigWig signal p-value ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF903YHB, ENCFF970QPM 1498172803 ENCODE Processing Pipeline 18bbcfaeed9e5421bcbc01459db243be https://www.encodeproject.org/files/ENCFF773MRU/@@download/ENCFF773MRU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF173TRV bigWig fold change over control ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF903YHB 1189334083 ENCODE Processing Pipeline a9bf21bc2405229046f3e23ff3ea1782 https://www.encodeproject.org/files/ENCFF173TRV/@@download/ENCFF173TRV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF363DQP bigWig fold change over control ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF970QPM 1089559874 ENCODE Processing Pipeline 27a6eac5abc024b0c1e61ac1c7a906df https://www.encodeproject.org/files/ENCFF363DQP/@@download/ENCFF363DQP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF729UPL bigWig fold change over control ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF903YHB, ENCFF970QPM 1685921400 ENCODE Processing Pipeline 09c8d42b51b07cd5926009bd75108b50 https://www.encodeproject.org/files/ENCFF729UPL/@@download/ENCFF729UPL.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF949JDW bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF903YHB 6331062 ENCODE Processing Pipeline 6bbf0942aeb18812811949afa78d16cd https://www.encodeproject.org/files/ENCFF949JDW/@@download/ENCFF949JDW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF711YJV bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF970QPM 6383302 ENCODE Processing Pipeline 80ad69dffe8678578ff88f1a5db8508f https://www.encodeproject.org/files/ENCFF711YJV/@@download/ENCFF711YJV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF515ZLO bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF903YHB, ENCFF970QPM 6960960 ENCODE Processing Pipeline 69896100aba35d2dc17410de06f9d9e5 https://www.encodeproject.org/files/ENCFF515ZLO/@@download/ENCFF515ZLO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF435AWP bigBed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF949JDW 11605051 ENCODE Processing Pipeline 3f48d5d7031d38d91c0f0d887903712f https://www.encodeproject.org/files/ENCFF435AWP/@@download/ENCFF435AWP.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF395DAU bigBed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF711YJV 11598109 ENCODE Processing Pipeline ca75b78f61bbc33f02492a95dd187aa6 https://www.encodeproject.org/files/ENCFF395DAU/@@download/ENCFF395DAU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF772LIX bed narrowPeak conservative idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF515ZLO, ENCFF711YJV, ENCFF949JDW 559411 ENCODE Processing Pipeline 7598fb070d23c9daf0b11d2b4d414439 https://www.encodeproject.org/files/ENCFF772LIX/@@download/ENCFF772LIX.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF653YNF bigBed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF515ZLO 11501471 ENCODE Processing Pipeline bb7b51db315832b30c4dae97e26f1dec https://www.encodeproject.org/files/ENCFF653YNF/@@download/ENCFF653YNF.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF836IQP bigBed narrowPeak conservative idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF772LIX 1055118 ENCODE Processing Pipeline b213a24ab6b2d7e75f10c89087a196e9 https://www.encodeproject.org/files/ENCFF836IQP/@@download/ENCFF836IQP.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF177CIX bed narrowPeak optimal idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF515ZLO, ENCFF711YJV, ENCFF949JDW 573185 ENCODE Processing Pipeline 630df1dc7088ad16ccdd1f082856a0ea https://www.encodeproject.org/files/ENCFF177CIX/@@download/ENCFF177CIX.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF445VSN bigBed narrowPeak optimal idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF177CIX 1072431 ENCODE Processing Pipeline d78b3ac2032b838e9b7e1c2ebe306278 https://www.encodeproject.org/files/ENCFF445VSN/@@download/ENCFF445VSN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF063LFR bigWig signal p-value ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF221VRH 1174067211 ENCODE Processing Pipeline e397aa41d17e77d249aef39526e67205 https://www.encodeproject.org/files/ENCFF063LFR/@@download/ENCFF063LFR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF678XTS bigWig signal p-value ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF404VMP 1112000286 ENCODE Processing Pipeline d9b427b9c9efff248c5665d6baacf4c0 https://www.encodeproject.org/files/ENCFF678XTS/@@download/ENCFF678XTS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF517RVX bigWig signal p-value ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF221VRH, ENCFF404VMP 1520698070 ENCODE Processing Pipeline 00e1de3b8d61d4a98e9ba8da4b6b57e7 https://www.encodeproject.org/files/ENCFF517RVX/@@download/ENCFF517RVX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF055UUP bigWig fold change over control ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF221VRH 1189199917 ENCODE Processing Pipeline df5338b2b9e62663a3e89bbeb3dcf3dd https://www.encodeproject.org/files/ENCFF055UUP/@@download/ENCFF055UUP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF421ADD bigWig fold change over control ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF404VMP 1081602371 ENCODE Processing Pipeline 28a36abd9388186293b758b98ab5e9ed https://www.encodeproject.org/files/ENCFF421ADD/@@download/ENCFF421ADD.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF726VUP bigWig fold change over control ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF221VRH, ENCFF404VMP 1688160345 ENCODE Processing Pipeline 1e3826dda7b121ef28d53f5e7fea23ae https://www.encodeproject.org/files/ENCFF726VUP/@@download/ENCFF726VUP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF602HQV bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF221VRH 6201650 ENCODE Processing Pipeline e8473f5e1b6669de21c985d55f71dde5 https://www.encodeproject.org/files/ENCFF602HQV/@@download/ENCFF602HQV.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF066HJY bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF404VMP 6255661 ENCODE Processing Pipeline c3aa31132bf176c3aa4e468ac8e72b55 https://www.encodeproject.org/files/ENCFF066HJY/@@download/ENCFF066HJY.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF519TLP bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF221VRH, ENCFF404VMP 6875560 ENCODE Processing Pipeline bb981a3e4892c50a1f4e85c1e25ae618 https://www.encodeproject.org/files/ENCFF519TLP/@@download/ENCFF519TLP.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF063VWY bigBed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF602HQV 11601659 ENCODE Processing Pipeline 4d087010c1fda7d946754f96d08317c1 https://www.encodeproject.org/files/ENCFF063VWY/@@download/ENCFF063VWY.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF720FNV bigBed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF066HJY 11583441 ENCODE Processing Pipeline 7c0c062fcb3dec8a384beca0eae44cd7 https://www.encodeproject.org/files/ENCFF720FNV/@@download/ENCFF720FNV.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF552DRU bigBed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519TLP 11514418 ENCODE Processing Pipeline 1b49310ae95f2fd592d360a4cbe18708 https://www.encodeproject.org/files/ENCFF552DRU/@@download/ENCFF552DRU.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF024FLW bed narrowPeak conservative idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF066HJY, ENCFF419RSJ, ENCFF519TLP, ENCFF602HQV 559748 ENCODE Processing Pipeline b801153420531a0fe84975886e88f269 https://www.encodeproject.org/files/ENCFF024FLW/@@download/ENCFF024FLW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF923SEA bigBed narrowPeak conservative idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF024FLW 1058620 ENCODE Processing Pipeline b335b2ab78f81d189da1fa584d989184 https://www.encodeproject.org/files/ENCFF923SEA/@@download/ENCFF923SEA.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF149OME bed narrowPeak optimal idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF066HJY, ENCFF419RSJ, ENCFF519TLP, ENCFF602HQV 575533 ENCODE Processing Pipeline ff82b32216a850998e3e32a8eef1f862 https://www.encodeproject.org/files/ENCFF149OME/@@download/ENCFF149OME.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF557RTD bigBed narrowPeak optimal idr thresholded peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF149OME 1079477 ENCODE Processing Pipeline 4a015d967833342220a2f5471a520749 https://www.encodeproject.org/files/ENCFF557RTD/@@download/ENCFF557RTD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF282IAI bam unfiltered alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 100 ENCFF175HFF, ENCFF543HLG, ENCFF807MUK 7987147359 ENCODE Processing Pipeline 0df41fbe607409bc60c04a69a22840fe https://www.encodeproject.org/files/ENCFF282IAI/@@download/ENCFF282IAI.bam hg19 released ENCFF435PNP bam unfiltered alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 100 ENCFF354HNG, ENCFF733YZZ, ENCFF807MUK 6445740875 ENCODE Processing Pipeline 25b66d24932972ade83cc8df71145c30 https://www.encodeproject.org/files/ENCFF435PNP/@@download/ENCFF435PNP.bam hg19 released ENCFF733YZZ fastq reads ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF354HNG 2787557976 Michael Snyder, Stanford 1c9b55e0f7a6177ce3c2a626e4b8856d SRA:SRR5111811 https://www.encodeproject.org/files/ENCFF733YZZ/@@download/ENCFF733YZZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF175HFF fastq reads ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 1 100 paired-ended 1 ENCFF543HLG 3804982013 Michael Snyder, Stanford 0799f71562be59138d1b8103020f6f43 SRA:SRR5111810 https://www.encodeproject.org/files/ENCFF175HFF/@@download/ENCFF175HFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF543HLG fastq reads ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 1 100 paired-ended 2 ENCFF175HFF 3793634577 Michael Snyder, Stanford e496e7fea21fdf9cf1ad97c70d21a076 SRA:SRR5111810 https://www.encodeproject.org/files/ENCFF543HLG/@@download/ENCFF543HLG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF354HNG fastq reads ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF733YZZ 2841922161 Michael Snyder, Stanford f27044700fd506907875a81048d145db SRA:SRR5111811 https://www.encodeproject.org/files/ENCFF354HNG/@@download/ENCFF354HNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF433CVZ bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 100 ENCFF354HNG, ENCFF733YZZ, ENCFF807MUK 5417868572 ENCODE Processing Pipeline fa39a447cf435dde7399829dfa11b291 https://www.encodeproject.org/files/ENCFF433CVZ/@@download/ENCFF433CVZ.bam hg19 released ENCFF557MNR bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 100 ENCFF175HFF, ENCFF543HLG, ENCFF807MUK 6789361590 ENCODE Processing Pipeline 59ef49e3d5d0ae4a0004d40d818eaf8b https://www.encodeproject.org/files/ENCFF557MNR/@@download/ENCFF557MNR.bam hg19 released ENCFF135BIR bigWig signal p-value ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF433CVZ, ENCFF583FAG 1250478458 ENCODE Processing Pipeline 892d4a3ef60d0913597b772dcced99e6 https://www.encodeproject.org/files/ENCFF135BIR/@@download/ENCFF135BIR.bigWig hg19 released ENCFF138TVN bigWig signal p-value ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF433CVZ, ENCFF557MNR, ENCFF583FAG 2204232612 ENCODE Processing Pipeline f4ca37e8eed46f3c385dc9a357b3d000 https://www.encodeproject.org/files/ENCFF138TVN/@@download/ENCFF138TVN.bigWig hg19 released ENCFF622OKQ bigWig fold change over control ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF433CVZ, ENCFF583FAG 1155296587 ENCODE Processing Pipeline 0cedcaa926b4aeace8f86cbd5d55db3a https://www.encodeproject.org/files/ENCFF622OKQ/@@download/ENCFF622OKQ.bigWig hg19 released ENCFF502ZFP bigWig fold change over control ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF433CVZ, ENCFF557MNR, ENCFF583FAG 2248004332 ENCODE Processing Pipeline d38f0e9bddbe9e9a2951126be75cdf11 https://www.encodeproject.org/files/ENCFF502ZFP/@@download/ENCFF502ZFP.bigWig hg19 released ENCFF933XIC bam unfiltered alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 100 ENCFF354HNG, ENCFF643CGH, ENCFF733YZZ 6464853782 ENCODE Processing Pipeline fcd3084884bd05efa2d8b4b12e1b85fc https://www.encodeproject.org/files/ENCFF933XIC/@@download/ENCFF933XIC.bam GRCh38 released ENCFF007SAN bam unfiltered alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 100 ENCFF175HFF, ENCFF543HLG, ENCFF643CGH 7999652611 ENCODE Processing Pipeline ef378cd12b47e2a058daf1f1a94350f1 https://www.encodeproject.org/files/ENCFF007SAN/@@download/ENCFF007SAN.bam GRCh38 released ENCFF091EBR bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 100 ENCFF354HNG, ENCFF643CGH, ENCFF733YZZ 5422017125 ENCODE Processing Pipeline b82401a6d133ecbf72dde37b398a4368 https://www.encodeproject.org/files/ENCFF091EBR/@@download/ENCFF091EBR.bam GRCh38 released ENCFF801GXY bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 100 ENCFF175HFF, ENCFF543HLG, ENCFF643CGH 6793405106 ENCODE Processing Pipeline 0ff7d437df4f0fefe8ad066be9621d40 https://www.encodeproject.org/files/ENCFF801GXY/@@download/ENCFF801GXY.bam GRCh38 released ENCFF753XZP bigWig signal p-value ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF091EBR, ENCFF426RDP 1129769077 ENCODE Processing Pipeline 172138dbb13f32302167c020cf97825b https://www.encodeproject.org/files/ENCFF753XZP/@@download/ENCFF753XZP.bigWig GRCh38 released ENCFF445SYX bigWig signal p-value ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF801GXY 1434120752 ENCODE Processing Pipeline 6dce30ac6b117b51eaaefb9557e3d9b8 https://www.encodeproject.org/files/ENCFF445SYX/@@download/ENCFF445SYX.bigWig GRCh38 released ENCFF341ENL bigWig signal p-value ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF091EBR, ENCFF291AFY, ENCFF426RDP, ENCFF801GXY 2245131894 ENCODE Processing Pipeline c5bb10052288f1b6c3b8a34cde780cdb https://www.encodeproject.org/files/ENCFF341ENL/@@download/ENCFF341ENL.bigWig GRCh38 released ENCFF459JRH bigWig fold change over control ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF091EBR, ENCFF426RDP 1166992967 ENCODE Processing Pipeline 8cdc8efa204a55b3db47aa2f5fd5e4db https://www.encodeproject.org/files/ENCFF459JRH/@@download/ENCFF459JRH.bigWig GRCh38 released ENCFF832MDC bigWig fold change over control ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF801GXY 1768084645 ENCODE Processing Pipeline 14b1df2824c47ab58e4491f3bbfd4d31 https://www.encodeproject.org/files/ENCFF832MDC/@@download/ENCFF832MDC.bigWig GRCh38 released ENCFF034IDS bigWig fold change over control ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF091EBR, ENCFF291AFY, ENCFF426RDP, ENCFF801GXY 2290747779 ENCODE Processing Pipeline 5d98f838ff5452520809b5ba22d9097a https://www.encodeproject.org/files/ENCFF034IDS/@@download/ENCFF034IDS.bigWig GRCh38 released ENCFF885AQG bigBed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF497FWF 13341622 ENCODE Processing Pipeline 0c30ff61428fa00fa6ab9fc598f11927 https://www.encodeproject.org/files/ENCFF885AQG/@@download/ENCFF885AQG.bigBed GRCh38 released ENCFF571XNN bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF091EBR, ENCFF291AFY, ENCFF426RDP, ENCFF801GXY 7280453 ENCODE Processing Pipeline 78eaa79a84f1f013fe6d76d489f32407 https://www.encodeproject.org/files/ENCFF571XNN/@@download/ENCFF571XNN.bed.gz GRCh38 released ENCFF055EZM bigBed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF181BKJ 13265936 ENCODE Processing Pipeline 81be2854debb673ae25dfa8c4c9e8be0 https://www.encodeproject.org/files/ENCFF055EZM/@@download/ENCFF055EZM.bigBed GRCh38 released ENCFF181BKJ bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF091EBR, ENCFF426RDP 6775439 ENCODE Processing Pipeline 784eb2a1ff3029b79629534fb1a20d1d https://www.encodeproject.org/files/ENCFF181BKJ/@@download/ENCFF181BKJ.bed.gz GRCh38 released ENCFF497FWF bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF801GXY 6971715 ENCODE Processing Pipeline 688d6ec0b7dff62c4c5f34e6c9f9d568 https://www.encodeproject.org/files/ENCFF497FWF/@@download/ENCFF497FWF.bed.gz GRCh38 released ENCFF590FEF bigBed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF571XNN 13139553 ENCODE Processing Pipeline b849fea9547087b2d8b5781f25708c89 https://www.encodeproject.org/files/ENCFF590FEF/@@download/ENCFF590FEF.bigBed GRCh38 released ENCFF598QQF bed narrowPeak conservative idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF181BKJ, ENCFF419RSJ, ENCFF497FWF, ENCFF571XNN 525078 ENCODE Processing Pipeline 513cf9d89e2817578ffc7286697cf99c https://www.encodeproject.org/files/ENCFF598QQF/@@download/ENCFF598QQF.bed.gz GRCh38 released ENCFF168JAV bigBed narrowPeak conservative idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF598QQF 1217035 ENCODE Processing Pipeline 6a0baf9ea489d09fa06abd0ae6c78782 https://www.encodeproject.org/files/ENCFF168JAV/@@download/ENCFF168JAV.bigBed GRCh38 released ENCFF220RUS bed narrowPeak optimal idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF181BKJ, ENCFF419RSJ, ENCFF497FWF, ENCFF571XNN 568459 ENCODE Processing Pipeline 61fec61f50445e32f8466b706ba404e5 https://www.encodeproject.org/files/ENCFF220RUS/@@download/ENCFF220RUS.bed.gz GRCh38 released ENCFF380NMM bigBed narrowPeak optimal idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF220RUS 1317238 ENCODE Processing Pipeline 40d2555171babfad32228f0b84d16523 https://www.encodeproject.org/files/ENCFF380NMM/@@download/ENCFF380NMM.bigBed GRCh38 released ENCFF880OEF bigWig fold change over control ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF557MNR, ENCFF583FAG 1776802563 ENCODE Processing Pipeline 62aadbd84fd622666c14e61f6eb590fe https://www.encodeproject.org/files/ENCFF880OEF/@@download/ENCFF880OEF.bigWig hg19 released ENCFF502IBZ bigWig signal p-value ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF557MNR, ENCFF583FAG 1589898016 ENCODE Processing Pipeline 1c8a402e53f6c6427dc5195c60d7d7bd https://www.encodeproject.org/files/ENCFF502IBZ/@@download/ENCFF502IBZ.bigWig hg19 released ENCFF996MTW bigBed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF458NNN 13260023 ENCODE Processing Pipeline df3603656182e9b4bd5eaad2e35492f6 https://www.encodeproject.org/files/ENCFF996MTW/@@download/ENCFF996MTW.bigBed hg19 released ENCFF458NNN bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF433CVZ, ENCFF583FAG 6781894 ENCODE Processing Pipeline 3cea4ff84cc248007568d273d01a08cf https://www.encodeproject.org/files/ENCFF458NNN/@@download/ENCFF458NNN.bed.gz hg19 released ENCFF580NQL bed narrowPeak optimal idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF001TDO, ENCFF458NNN, ENCFF808QLK, ENCFF975DCJ 568982 ENCODE Processing Pipeline e9cf1da96696788fbee0e9d81b21de36 https://www.encodeproject.org/files/ENCFF580NQL/@@download/ENCFF580NQL.bed.gz hg19 released ENCFF395LXQ bigBed narrowPeak conservative idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF940APQ 1220105 ENCODE Processing Pipeline e67362ced390de18a3453e65550e84be https://www.encodeproject.org/files/ENCFF395LXQ/@@download/ENCFF395LXQ.bigBed hg19 released ENCFF911XKC bigBed narrowPeak optimal idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF580NQL 1312934 ENCODE Processing Pipeline a2747fb1ded4c2a09bfdbdef2b8440d0 https://www.encodeproject.org/files/ENCFF911XKC/@@download/ENCFF911XKC.bigBed hg19 released ENCFF975DCJ bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF557MNR, ENCFF583FAG 6986687 ENCODE Processing Pipeline 183751b93cd51abd21217857c7f02ed9 https://www.encodeproject.org/files/ENCFF975DCJ/@@download/ENCFF975DCJ.bed.gz hg19 released ENCFF240BMO bigBed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF808QLK 13161410 ENCODE Processing Pipeline a5bec55cfc3d42850dd8e66656d901bc https://www.encodeproject.org/files/ENCFF240BMO/@@download/ENCFF240BMO.bigBed hg19 released ENCFF808QLK bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF433CVZ, ENCFF557MNR, ENCFF583FAG 7296340 ENCODE Processing Pipeline 1a6efd3f58d1067317832b03dfcfd56f https://www.encodeproject.org/files/ENCFF808QLK/@@download/ENCFF808QLK.bed.gz hg19 released ENCFF947XOS bigBed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 ENCFF975DCJ 13321324 ENCODE Processing Pipeline 436136b6d643354a32e68e33cde6e631 https://www.encodeproject.org/files/ENCFF947XOS/@@download/ENCFF947XOS.bigBed hg19 released ENCFF940APQ bed narrowPeak conservative idr thresholded peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF001TDO, ENCFF458NNN, ENCFF808QLK, ENCFF975DCJ 529080 ENCODE Processing Pipeline 971a8e6ed9521b97dbc718e8d1ea1fd3 https://www.encodeproject.org/files/ENCFF940APQ/@@download/ENCFF940APQ.bed.gz hg19 released ENCFF445ZKX fastq reads ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF804SFA 2147520955 Michael Snyder, Stanford 84852f2fd26e89b1f854f0079f3dd704 SRA:SRR5111295 https://www.encodeproject.org/files/ENCFF445ZKX/@@download/ENCFF445ZKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF071KJL fastq reads ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF764PLC 2251991045 Michael Snyder, Stanford 31179b5abad57489fb1b66c4daad67bd SRA:SRR5111294 https://www.encodeproject.org/files/ENCFF071KJL/@@download/ENCFF071KJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF764PLC fastq reads ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF071KJL 2316431178 Michael Snyder, Stanford 82ef83e34a1bad5ed24dc5c1e2311698 SRA:SRR5111294 https://www.encodeproject.org/files/ENCFF764PLC/@@download/ENCFF764PLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF804SFA fastq reads ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF445ZKX 2205773185 Michael Snyder, Stanford 32867561357f7e103914bdb0470f098b SRA:SRR5111295 https://www.encodeproject.org/files/ENCFF804SFA/@@download/ENCFF804SFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF519UBP bam unfiltered alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF071KJL, ENCFF643CGH, ENCFF764PLC 4973464484 ENCODE Processing Pipeline 5aa3f9cb4c63542132a236452fc0ae5a https://www.encodeproject.org/files/ENCFF519UBP/@@download/ENCFF519UBP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF628XSL bam unfiltered alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF071KJL, ENCFF764PLC, ENCFF807MUK 4969917141 ENCODE Processing Pipeline e162debfc4a1fcec5206f4cdee258721 https://www.encodeproject.org/files/ENCFF628XSL/@@download/ENCFF628XSL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF269ULE bam unfiltered alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF445ZKX, ENCFF643CGH, ENCFF804SFA 4735972100 ENCODE Processing Pipeline e2b2551acee7b4bcd46be81db9b1f5c0 https://www.encodeproject.org/files/ENCFF269ULE/@@download/ENCFF269ULE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF894TCM bam unfiltered alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF445ZKX, ENCFF804SFA, ENCFF807MUK 4732889762 ENCODE Processing Pipeline 32dc527d485818127b3941d8996a45dd https://www.encodeproject.org/files/ENCFF894TCM/@@download/ENCFF894TCM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF449CDS bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF445ZKX, ENCFF643CGH, ENCFF804SFA 4028240150 ENCODE Processing Pipeline e5a8249ea8725a135a1abc9ffbdcdc15 https://www.encodeproject.org/files/ENCFF449CDS/@@download/ENCFF449CDS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF424HAO bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF071KJL, ENCFF764PLC, ENCFF807MUK 4236108379 ENCODE Processing Pipeline 789f938a3492f82cc0f62877f3ebbc84 https://www.encodeproject.org/files/ENCFF424HAO/@@download/ENCFF424HAO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF642MUY bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF071KJL, ENCFF643CGH, ENCFF764PLC 4236985355 ENCODE Processing Pipeline 2d75931bec60bc3cf9a0591e114244a7 https://www.encodeproject.org/files/ENCFF642MUY/@@download/ENCFF642MUY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF541OLW bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF445ZKX, ENCFF804SFA, ENCFF807MUK 4027463874 ENCODE Processing Pipeline 69f0a0325e615463115bafe2372317a0 https://www.encodeproject.org/files/ENCFF541OLW/@@download/ENCFF541OLW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF057GLO bigWig signal p-value ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424HAO 1311974840 ENCODE Processing Pipeline 2402eeb95bdebc6ef702cd3cda229bee https://www.encodeproject.org/files/ENCFF057GLO/@@download/ENCFF057GLO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF907EPS bigWig signal p-value ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF541OLW 1091119628 ENCODE Processing Pipeline b0d1113dd905d58d412b595b45a30eca https://www.encodeproject.org/files/ENCFF907EPS/@@download/ENCFF907EPS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF010TCX bigWig fold change over control ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424HAO 1244798855 ENCODE Processing Pipeline 9a4e379043b17f1fc8fc4e7088d46057 https://www.encodeproject.org/files/ENCFF010TCX/@@download/ENCFF010TCX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF868JYG bigWig signal p-value ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424HAO, ENCFF541OLW 1599050741 ENCODE Processing Pipeline ce55090ccf369918960685ea86093b7f https://www.encodeproject.org/files/ENCFF868JYG/@@download/ENCFF868JYG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF792XSL bigWig fold change over control ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF541OLW 1199605728 ENCODE Processing Pipeline 75901efcbbe854e92770f5143f0d448e https://www.encodeproject.org/files/ENCFF792XSL/@@download/ENCFF792XSL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF756OJD bigWig fold change over control ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424HAO, ENCFF541OLW 1749830416 ENCODE Processing Pipeline b546149f23523568de65a812256bb41b https://www.encodeproject.org/files/ENCFF756OJD/@@download/ENCFF756OJD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF378ZAD bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424HAO 6982223 ENCODE Processing Pipeline 2c8b720c103dd328cca4e49abd98e687 https://www.encodeproject.org/files/ENCFF378ZAD/@@download/ENCFF378ZAD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF253XIY bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF541OLW 7069527 ENCODE Processing Pipeline 62dfb3ffb12006a6978bb9b2ad4cd6dd https://www.encodeproject.org/files/ENCFF253XIY/@@download/ENCFF253XIY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF977DEH bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424HAO, ENCFF541OLW 7199807 ENCODE Processing Pipeline dd44e7650a0caf107f5b428073e43c71 https://www.encodeproject.org/files/ENCFF977DEH/@@download/ENCFF977DEH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF726OUB bigBed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF378ZAD 13028720 ENCODE Processing Pipeline 9eb49eba1196521b57e22b3f624f7d6c https://www.encodeproject.org/files/ENCFF726OUB/@@download/ENCFF726OUB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF257XPU bigBed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF253XIY 13171431 ENCODE Processing Pipeline 2198ddddb4e3756936ef0ce3046073c0 https://www.encodeproject.org/files/ENCFF257XPU/@@download/ENCFF257XPU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF718JTC bigBed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF977DEH 13122016 ENCODE Processing Pipeline e968a510456b987468acbdadf50639ce https://www.encodeproject.org/files/ENCFF718JTC/@@download/ENCFF718JTC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF137PCZ bed narrowPeak conservative idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF253XIY, ENCFF378ZAD, ENCFF977DEH 1099845 ENCODE Processing Pipeline 5663a0783f90135fc7cdbe86d19784c3 https://www.encodeproject.org/files/ENCFF137PCZ/@@download/ENCFF137PCZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF099GAK bigBed narrowPeak conservative idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF137PCZ 2387222 ENCODE Processing Pipeline 1e4ce3a422579d81553def4ecf3fa938 https://www.encodeproject.org/files/ENCFF099GAK/@@download/ENCFF099GAK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF540BMV bed narrowPeak optimal idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF253XIY, ENCFF378ZAD, ENCFF977DEH 1150514 ENCODE Processing Pipeline 5fb165c5a668131ca48365fdd47988d9 https://www.encodeproject.org/files/ENCFF540BMV/@@download/ENCFF540BMV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF780MLW bigBed narrowPeak optimal idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF540BMV 2476634 ENCODE Processing Pipeline 27a93079371ed1c1093ae979ffe642d7 https://www.encodeproject.org/files/ENCFF780MLW/@@download/ENCFF780MLW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF464HWN bigWig signal p-value ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF642MUY 1339736376 ENCODE Processing Pipeline 255b5a835d785a8dea90d032d6387731 https://www.encodeproject.org/files/ENCFF464HWN/@@download/ENCFF464HWN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF312RRV bigWig signal p-value ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF449CDS 1195262990 ENCODE Processing Pipeline c35a6276c7421c4c6c555a6bf0dc5341 https://www.encodeproject.org/files/ENCFF312RRV/@@download/ENCFF312RRV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF332UFM bigWig signal p-value ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF449CDS, ENCFF642MUY 1717637779 ENCODE Processing Pipeline 7c69e26c366eb2bdc788b43f2ff3b51b https://www.encodeproject.org/files/ENCFF332UFM/@@download/ENCFF332UFM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF826XNM bigWig fold change over control ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF642MUY 1240707525 ENCODE Processing Pipeline 667574a3e1be5a22cb3ddece2f264edf https://www.encodeproject.org/files/ENCFF826XNM/@@download/ENCFF826XNM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF739SJS bigWig fold change over control ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF449CDS 1201113585 ENCODE Processing Pipeline 487079682b2d16f6af365bca4f437362 https://www.encodeproject.org/files/ENCFF739SJS/@@download/ENCFF739SJS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF773LQW bigWig fold change over control ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF449CDS, ENCFF642MUY 1749581653 ENCODE Processing Pipeline a21993932cb498acbf4262c3223657ab https://www.encodeproject.org/files/ENCFF773LQW/@@download/ENCFF773LQW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF294THF bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF449CDS 7028724 ENCODE Processing Pipeline 2b423d48f302cf64119fdac4e98c06af https://www.encodeproject.org/files/ENCFF294THF/@@download/ENCFF294THF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF642SMH bigBed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF294THF 13161965 ENCODE Processing Pipeline fd32aa1a2f9730fca00288cd65b6ebf5 https://www.encodeproject.org/files/ENCFF642SMH/@@download/ENCFF642SMH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF806WVC bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF642MUY 7060945 ENCODE Processing Pipeline 93a5e14663894748a83e5cc2fdb82257 https://www.encodeproject.org/files/ENCFF806WVC/@@download/ENCFF806WVC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF814AYS bigBed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF806WVC 13173444 ENCODE Processing Pipeline 16c6f37e6bf869fb0842d23bc39e78bf https://www.encodeproject.org/files/ENCFF814AYS/@@download/ENCFF814AYS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF662LUJ bed narrowPeak conservative idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF294THF, ENCFF396ISL, ENCFF419RSJ, ENCFF806WVC 1082995 ENCODE Processing Pipeline 32227f6fedd265b80303d1536c87c0d2 https://www.encodeproject.org/files/ENCFF662LUJ/@@download/ENCFF662LUJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF396ISL bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF449CDS, ENCFF642MUY 7145852 ENCODE Processing Pipeline 0687acc7baadb2a49ca994a8ba66812f https://www.encodeproject.org/files/ENCFF396ISL/@@download/ENCFF396ISL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF524BKK bigBed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF396ISL 13068904 ENCODE Processing Pipeline 3b8b2355eaa8f6b8ac4d5a8bb42acb9a https://www.encodeproject.org/files/ENCFF524BKK/@@download/ENCFF524BKK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF419WEO bigBed narrowPeak conservative idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF662LUJ 2363608 ENCODE Processing Pipeline 67a3225973c920c47cf6ec6751800666 https://www.encodeproject.org/files/ENCFF419WEO/@@download/ENCFF419WEO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF522TTY bigBed narrowPeak optimal idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF680HBX 2471843 ENCODE Processing Pipeline 22b1f45e0bdb604b1419764bd0b5ae81 https://www.encodeproject.org/files/ENCFF522TTY/@@download/ENCFF522TTY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF680HBX bed narrowPeak optimal idr thresholded peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF294THF, ENCFF396ISL, ENCFF419RSJ, ENCFF806WVC 1143274 ENCODE Processing Pipeline 8007686239ef005b51910f8f16901f6b https://www.encodeproject.org/files/ENCFF680HBX/@@download/ENCFF680HBX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF055HFW bam unfiltered alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIY, ENCFF002EJA, ENCFF807MUK 5608094196 ENCODE Processing Pipeline 734e1e5a4f29dbd7948ce648da536683 https://www.encodeproject.org/files/ENCFF055HFW/@@download/ENCFF055HFW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF617EZL bam unfiltered alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJG, ENCFF002EJJ, ENCFF807MUK 5522016033 ENCODE Processing Pipeline dfd3ebfd1b784069de001c3384cff269 https://www.encodeproject.org/files/ENCFF617EZL/@@download/ENCFF617EZL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EIY fastq reads ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJA 2703276585 Michael Snyder, Stanford 7ed4c2b2bf1fffcce92afbe2c2ffe9da SRA:SRR6213105 https://www.encodeproject.org/files/ENCFF002EIY/@@download/ENCFF002EIY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EJA fastq reads ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EIY 2675694089 Michael Snyder, Stanford e8783655441ad73a41730cb339121824 SRA:SRR6213105 https://www.encodeproject.org/files/ENCFF002EJA/@@download/ENCFF002EJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EJG fastq reads ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EJJ 2508662085 Michael Snyder, Stanford 1cb91a66c4d5f6fb8e378a6eacf45504 SRA:SRR6213106 https://www.encodeproject.org/files/ENCFF002EJG/@@download/ENCFF002EJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EJJ fastq reads ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EJG 2533092277 Michael Snyder, Stanford 0f3b7040537e2ed80b678b9f14efaa2b SRA:SRR6213106 https://www.encodeproject.org/files/ENCFF002EJJ/@@download/ENCFF002EJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF771VVI bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIY, ENCFF002EJA, ENCFF807MUK 3981271768 ENCODE Processing Pipeline 8c78f1ee6e2cb7ffa286be36d3b8cbad https://www.encodeproject.org/files/ENCFF771VVI/@@download/ENCFF771VVI.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF660NZN bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJG, ENCFF002EJJ, ENCFF807MUK 4558509570 ENCODE Processing Pipeline 46f547d14ba6740b4490dec14f3ccf7f https://www.encodeproject.org/files/ENCFF660NZN/@@download/ENCFF660NZN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF192FZJ bigWig signal p-value ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF660NZN, ENCFF806YIH 1128743000 ENCODE Processing Pipeline 627b9aaf1f0de12ab02f5020fb197e91 https://www.encodeproject.org/files/ENCFF192FZJ/@@download/ENCFF192FZJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF328QCM bigWig signal p-value ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF771VVI 891249419 ENCODE Processing Pipeline bdb51916f60f7d00dad36914a0802659 https://www.encodeproject.org/files/ENCFF328QCM/@@download/ENCFF328QCM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF127UPD bigWig signal p-value ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF321TUP, ENCFF660NZN, ENCFF771VVI, ENCFF806YIH 1867779749 ENCODE Processing Pipeline 2fb9a2e857f0c4644e8ad2b0729dc9c9 https://www.encodeproject.org/files/ENCFF127UPD/@@download/ENCFF127UPD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF891PIM bigWig fold change over control ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF660NZN, ENCFF806YIH 1100355186 ENCODE Processing Pipeline d1774fbb3ede06227bf51db73a8e152f https://www.encodeproject.org/files/ENCFF891PIM/@@download/ENCFF891PIM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF006FBZ bigWig fold change over control ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF771VVI 1095307608 ENCODE Processing Pipeline 2061a08b40e94a220acc1d17a690e467 https://www.encodeproject.org/files/ENCFF006FBZ/@@download/ENCFF006FBZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF813NWF bigWig fold change over control ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF321TUP, ENCFF660NZN, ENCFF771VVI, ENCFF806YIH 2011199737 ENCODE Processing Pipeline 627883528150ad1ef36a521d6be90a59 https://www.encodeproject.org/files/ENCFF813NWF/@@download/ENCFF813NWF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF980GCQ bam unfiltered alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJG, ENCFF002EJJ, ENCFF643CGH 5531087388 ENCODE Processing Pipeline 21a150d09ddde1036ed408c79e6ef2d5 https://www.encodeproject.org/files/ENCFF980GCQ/@@download/ENCFF980GCQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF355XGR bam unfiltered alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIY, ENCFF002EJA, ENCFF643CGH 5614123416 ENCODE Processing Pipeline ed44c0d41911f48ccec177ff1fc62db7 https://www.encodeproject.org/files/ENCFF355XGR/@@download/ENCFF355XGR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF057AUM bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIY, ENCFF002EJA, ENCFF643CGH 3986471704 ENCODE Processing Pipeline efd0107a5de97ea7a646064f951d232c https://www.encodeproject.org/files/ENCFF057AUM/@@download/ENCFF057AUM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF850BEV bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJG, ENCFF002EJJ, ENCFF643CGH 4564780931 ENCODE Processing Pipeline 684a709d0bb86c85b7dfeecd95ca9208 https://www.encodeproject.org/files/ENCFF850BEV/@@download/ENCFF850BEV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF420DTR bigWig signal p-value ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF057AUM, ENCFF189KJV 1082386367 ENCODE Processing Pipeline b3791b4030b01805780772d6f570dfe6 https://www.encodeproject.org/files/ENCFF420DTR/@@download/ENCFF420DTR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF254OIN bigWig signal p-value ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF850BEV 926128323 ENCODE Processing Pipeline 6dde694fb4355cea0bfdbe01f6c1c666 https://www.encodeproject.org/files/ENCFF254OIN/@@download/ENCFF254OIN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF646PCI bigWig signal p-value ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF057AUM, ENCFF189KJV, ENCFF419UIG, ENCFF850BEV 2021735195 ENCODE Processing Pipeline 73beea479f7f653d97dc53feb5d5ae6b https://www.encodeproject.org/files/ENCFF646PCI/@@download/ENCFF646PCI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF796BZA bigWig fold change over control ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF057AUM, ENCFF189KJV 1092652397 ENCODE Processing Pipeline 671e627e5fef207da166d03a65d40df7 https://www.encodeproject.org/files/ENCFF796BZA/@@download/ENCFF796BZA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF827BUN bigWig fold change over control ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF057AUM, ENCFF189KJV, ENCFF419UIG, ENCFF850BEV 2027218870 ENCODE Processing Pipeline be613c891d6893510d96894a7955b6bb https://www.encodeproject.org/files/ENCFF827BUN/@@download/ENCFF827BUN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF908MRX bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF057AUM, ENCFF189KJV, ENCFF419UIG, ENCFF850BEV 7035753 ENCODE Processing Pipeline 6e027b7e09393c7dd81675ed40cf6489 https://www.encodeproject.org/files/ENCFF908MRX/@@download/ENCFF908MRX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF926GSX bigBed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF148EOM 11303489 ENCODE Processing Pipeline 2ae54b1136bf012184a07803ec33db3f https://www.encodeproject.org/files/ENCFF926GSX/@@download/ENCFF926GSX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF195SHB bed narrowPeak conservative idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF148EOM, ENCFF209BZI, ENCFF419RSJ, ENCFF908MRX 72810 ENCODE Processing Pipeline 6fea63346975fd474a89cd14db6bfde4 https://www.encodeproject.org/files/ENCFF195SHB/@@download/ENCFF195SHB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF179WDI bed narrowPeak optimal idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF148EOM, ENCFF209BZI, ENCFF419RSJ, ENCFF908MRX 120258 ENCODE Processing Pipeline c7e6bf1917eee94d32ce3609561b4091 https://www.encodeproject.org/files/ENCFF179WDI/@@download/ENCFF179WDI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF682HNV bigWig fold change over control ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF850BEV 1106213086 ENCODE Processing Pipeline 3e415da3bffbd8ed5657018c1fb645d8 https://www.encodeproject.org/files/ENCFF682HNV/@@download/ENCFF682HNV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF418RDC bigBed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF209BZI 11224012 ENCODE Processing Pipeline 7e5c98fd2e881a34b2efb2f0a2f4b0fd https://www.encodeproject.org/files/ENCFF418RDC/@@download/ENCFF418RDC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF529PJR bigBed narrowPeak optimal idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF179WDI 281070 ENCODE Processing Pipeline 79e1d1d81e4f541fef973a74c2dd1739 https://www.encodeproject.org/files/ENCFF529PJR/@@download/ENCFF529PJR.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF148EOM bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF057AUM, ENCFF189KJV 6007837 ENCODE Processing Pipeline a9ae505ed4662e9c903baa40f2a2c666 https://www.encodeproject.org/files/ENCFF148EOM/@@download/ENCFF148EOM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF378MVK bigBed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF908MRX 11223062 ENCODE Processing Pipeline bf3afefacde82cd9ffb96f106e4b7083 https://www.encodeproject.org/files/ENCFF378MVK/@@download/ENCFF378MVK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF209BZI bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF850BEV 6104232 ENCODE Processing Pipeline e9e5686cb6213596b6799d91d46d829b https://www.encodeproject.org/files/ENCFF209BZI/@@download/ENCFF209BZI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF379VGD bigBed narrowPeak conservative idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF195SHB 204985 ENCODE Processing Pipeline 989dd82242abf6e20fc7f9fd9e93671e https://www.encodeproject.org/files/ENCFF379VGD/@@download/ENCFF379VGD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF561CFF bigBed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF844VMC 11279936 ENCODE Processing Pipeline d9c76a376e29e8c85140dc5106a033d0 https://www.encodeproject.org/files/ENCFF561CFF/@@download/ENCFF561CFF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF844VMC bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF771VVI 6007450 ENCODE Processing Pipeline 7fdebc2a00b17375d72c9ac64ab99956 https://www.encodeproject.org/files/ENCFF844VMC/@@download/ENCFF844VMC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF434QXG bigBed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF417FAK 11209391 ENCODE Processing Pipeline 2b27d01bd7d525f60318d06aa5daa32f https://www.encodeproject.org/files/ENCFF434QXG/@@download/ENCFF434QXG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF167JAR bigBed narrowPeak conservative idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF279LHO 207155 ENCODE Processing Pipeline 759776ab3e574d38fae22e6a292cccc8 https://www.encodeproject.org/files/ENCFF167JAR/@@download/ENCFF167JAR.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF053TBK bed narrowPeak optimal idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF417FAK, ENCFF678TZR, ENCFF844VMC 118243 ENCODE Processing Pipeline e22a0a18cb43373f975e5942d390db9b https://www.encodeproject.org/files/ENCFF053TBK/@@download/ENCFF053TBK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF417FAK bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 ENCFF660NZN, ENCFF806YIH 6105817 ENCODE Processing Pipeline 8a348ada81191434b4a083b63e16a341 https://www.encodeproject.org/files/ENCFF417FAK/@@download/ENCFF417FAK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF678TZR bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF321TUP, ENCFF660NZN, ENCFF771VVI, ENCFF806YIH 7036653 ENCODE Processing Pipeline 7b6db91fb0ae552522bbee80bb7304f7 https://www.encodeproject.org/files/ENCFF678TZR/@@download/ENCFF678TZR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF279LHO bed narrowPeak conservative idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF417FAK, ENCFF678TZR, ENCFF844VMC 75539 ENCODE Processing Pipeline b1ab675bcb8ba72dc50a63e6574a3a7f https://www.encodeproject.org/files/ENCFF279LHO/@@download/ENCFF279LHO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF973WIB bigBed narrowPeak optimal idr thresholded peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF053TBK 276284 ENCODE Processing Pipeline d8ca11c80d5bedba91659a181b5f3d9b https://www.encodeproject.org/files/ENCFF973WIB/@@download/ENCFF973WIB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF881HKJ bigBed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF678TZR 11214977 ENCODE Processing Pipeline 31302d876f3a857a743c135afcab279e https://www.encodeproject.org/files/ENCFF881HKJ/@@download/ENCFF881HKJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF649RQR fastq reads ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF638EKM 2459696746 Michael Snyder, Stanford e21d816b6ee5c145960aaccf85bed6da SRA:SRR5111953 https://www.encodeproject.org/files/ENCFF649RQR/@@download/ENCFF649RQR.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released antibody characterized with exemption ENCFF638EKM fastq reads ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF649RQR 2170999030 Michael Snyder, Stanford 2ec99d45402022a6ad923f2dcb0a9924 SRA:SRR5111953 https://www.encodeproject.org/files/ENCFF638EKM/@@download/ENCFF638EKM.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released antibody characterized with exemption ENCFF239IAD fastq reads ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF888IQK 3832289070 Michael Snyder, Stanford c410a0088b7e5c50981356915139003a SRA:SRR5111952 https://www.encodeproject.org/files/ENCFF239IAD/@@download/ENCFF239IAD.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released antibody characterized with exemption ENCFF888IQK fastq reads ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF239IAD 3669934729 Michael Snyder, Stanford 0836ac7657b9a977c634cb916a15db73 SRA:SRR5111952 https://www.encodeproject.org/files/ENCFF888IQK/@@download/ENCFF888IQK.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released antibody characterized with exemption ENCFF053ZIW bam unfiltered alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 100 ENCFF638EKM, ENCFF643CGH, ENCFF649RQR 4810786103 ENCODE Processing Pipeline 8c4a0ce83b9c60525c73446a531ee1cb https://www.encodeproject.org/files/ENCFF053ZIW/@@download/ENCFF053ZIW.bam GRCh38 released antibody characterized with exemption ENCFF382OKX bam unfiltered alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 100 ENCFF638EKM, ENCFF649RQR, ENCFF807MUK 4797074140 ENCODE Processing Pipeline 8d81d5925e1613fc977ab8821cfc3fae https://www.encodeproject.org/files/ENCFF382OKX/@@download/ENCFF382OKX.bam hg19 released antibody characterized with exemption ENCFF323YRS bam unfiltered alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 100 ENCFF239IAD, ENCFF643CGH, ENCFF888IQK 7378065391 ENCODE Processing Pipeline 779b616c763ddcb555df8117392b7319 https://www.encodeproject.org/files/ENCFF323YRS/@@download/ENCFF323YRS.bam GRCh38 released antibody characterized with exemption ENCFF951VNN bam unfiltered alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 100 ENCFF239IAD, ENCFF807MUK, ENCFF888IQK 7359456421 ENCODE Processing Pipeline 5d48bb18ed1c08a82f8512b97cab4dfe https://www.encodeproject.org/files/ENCFF951VNN/@@download/ENCFF951VNN.bam hg19 released antibody characterized with exemption ENCFF024FHS bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 100 ENCFF638EKM, ENCFF643CGH, ENCFF649RQR 3825801694 ENCODE Processing Pipeline 04f46e9d016c50edd9c90f39ede42a8c https://www.encodeproject.org/files/ENCFF024FHS/@@download/ENCFF024FHS.bam GRCh38 released antibody characterized with exemption ENCFF643ZMZ bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 100 ENCFF638EKM, ENCFF649RQR, ENCFF807MUK 3813651148 ENCODE Processing Pipeline c932c4e3ade463ea547efb2335f22b9a https://www.encodeproject.org/files/ENCFF643ZMZ/@@download/ENCFF643ZMZ.bam hg19 released antibody characterized with exemption ENCFF849SYR bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 100 ENCFF239IAD, ENCFF807MUK, ENCFF888IQK 6030464006 ENCODE Processing Pipeline eb626643681b8fde2ac8690bde557394 https://www.encodeproject.org/files/ENCFF849SYR/@@download/ENCFF849SYR.bam hg19 released antibody characterized with exemption ENCFF447SWP bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 100 ENCFF239IAD, ENCFF643CGH, ENCFF888IQK 6049503824 ENCODE Processing Pipeline 7b1e764d00dc5330c06addb428954e93 https://www.encodeproject.org/files/ENCFF447SWP/@@download/ENCFF447SWP.bam GRCh38 released antibody characterized with exemption ENCFF566YJT bigWig signal p-value ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF849SYR 1959013096 ENCODE Processing Pipeline 06c28ed40b11166060d68866f4302a78 https://www.encodeproject.org/files/ENCFF566YJT/@@download/ENCFF566YJT.bigWig hg19 released antibody characterized with exemption ENCFF327YAK bigWig signal p-value ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX 1861990886 ENCODE Processing Pipeline db83f2db7bfa5b078ab96ed05eb96488 https://www.encodeproject.org/files/ENCFF327YAK/@@download/ENCFF327YAK.bigWig hg19 released antibody characterized with exemption ENCFF155ODO bigWig signal p-value ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX, ENCFF849SYR 2741907124 ENCODE Processing Pipeline 461a2bab50b658896db539bcb637ffad https://www.encodeproject.org/files/ENCFF155ODO/@@download/ENCFF155ODO.bigWig hg19 released antibody characterized with exemption ENCFF957QXQ bigWig fold change over control ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF849SYR 2343099126 ENCODE Processing Pipeline 4ba163d4679b95b3aa6d08d7e35cc64d https://www.encodeproject.org/files/ENCFF957QXQ/@@download/ENCFF957QXQ.bigWig hg19 released antibody characterized with exemption ENCFF342BKP bigWig fold change over control ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX 1945994650 ENCODE Processing Pipeline 4d771cec8fe6c04ca3ffcd936348e511 https://www.encodeproject.org/files/ENCFF342BKP/@@download/ENCFF342BKP.bigWig hg19 released antibody characterized with exemption ENCFF293HMA bigWig fold change over control ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX, ENCFF849SYR 2766843511 ENCODE Processing Pipeline bcfb69b385c33e513bd41a15ee703c47 https://www.encodeproject.org/files/ENCFF293HMA/@@download/ENCFF293HMA.bigWig hg19 released antibody characterized with exemption ENCFF369GTZ bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF849SYR 7087951 ENCODE Processing Pipeline ff4d1db30a92eec13493cd4d147e5046 https://www.encodeproject.org/files/ENCFF369GTZ/@@download/ENCFF369GTZ.bed.gz hg19 released antibody characterized with exemption ENCFF694FNL bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX, ENCFF849SYR 7209442 ENCODE Processing Pipeline 7dca838ec1f00758de9795ff56b14502 https://www.encodeproject.org/files/ENCFF694FNL/@@download/ENCFF694FNL.bed.gz hg19 released antibody characterized with exemption ENCFF026DAN bigBed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF369GTZ 11332255 ENCODE Processing Pipeline 4a99907df00bde1f2a61e7bff3d49458 https://www.encodeproject.org/files/ENCFF026DAN/@@download/ENCFF026DAN.bigBed hg19 released antibody characterized with exemption ENCFF847CBY bigBed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF459AGI 11352064 ENCODE Processing Pipeline 176a4ce40c85501e7b80bb4bdebf573f https://www.encodeproject.org/files/ENCFF847CBY/@@download/ENCFF847CBY.bigBed hg19 released antibody characterized with exemption ENCFF139NXQ bed narrowPeak conservative idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF369GTZ, ENCFF459AGI, ENCFF694FNL 14596 ENCODE Processing Pipeline 0ef4116ffbfb11ee387d7b4b00ab8e62 https://www.encodeproject.org/files/ENCFF139NXQ/@@download/ENCFF139NXQ.bed.gz hg19 released antibody characterized with exemption ENCFF459AGI bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX 6911516 ENCODE Processing Pipeline 1a845ed94bfe8693ff218e902f99088a https://www.encodeproject.org/files/ENCFF459AGI/@@download/ENCFF459AGI.bed.gz hg19 released antibody characterized with exemption ENCFF028JJH bigBed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF694FNL 11252563 ENCODE Processing Pipeline 044ee12331a200e736d3cd0f97c9fb5e https://www.encodeproject.org/files/ENCFF028JJH/@@download/ENCFF028JJH.bigBed hg19 released antibody characterized with exemption ENCFF070UFW bigBed narrowPeak optimal idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF556DEP 94776 ENCODE Processing Pipeline d2073a45ea8e817cf3b439702d585955 https://www.encodeproject.org/files/ENCFF070UFW/@@download/ENCFF070UFW.bigBed hg19 released antibody characterized with exemption ENCFF840AGF bigBed narrowPeak conservative idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF139NXQ 75346 ENCODE Processing Pipeline 8ad99d15d516a0f5c401e5702f31dbcc https://www.encodeproject.org/files/ENCFF840AGF/@@download/ENCFF840AGF.bigBed hg19 released antibody characterized with exemption ENCFF556DEP bed narrowPeak optimal idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF369GTZ, ENCFF459AGI, ENCFF694FNL 26931 ENCODE Processing Pipeline c521f53794c533f3c0ed06c7b4434069 https://www.encodeproject.org/files/ENCFF556DEP/@@download/ENCFF556DEP.bed.gz hg19 released antibody characterized with exemption ENCFF148HFJ bigWig signal p-value ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF447SWP, ENCFF475DWJ, ENCFF621RXC 1959569164 ENCODE Processing Pipeline 1e42e18b4e4ecafdecffee7d15fa5620 https://www.encodeproject.org/files/ENCFF148HFJ/@@download/ENCFF148HFJ.bigWig GRCh38 released antibody characterized with exemption ENCFF997GHR bigWig signal p-value ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF024FHS, ENCFF475DWJ, ENCFF621RXC 1988059791 ENCODE Processing Pipeline b317da4a50d2a0f8f8f59e1fee7cce47 https://www.encodeproject.org/files/ENCFF997GHR/@@download/ENCFF997GHR.bigWig GRCh38 released antibody characterized with exemption ENCFF671RTR bigWig signal p-value ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF024FHS, ENCFF447SWP, ENCFF475DWJ, ENCFF621RXC 2519653049 ENCODE Processing Pipeline ddd5f35ef927f72c49f6760906a50acc https://www.encodeproject.org/files/ENCFF671RTR/@@download/ENCFF671RTR.bigWig GRCh38 released antibody characterized with exemption ENCFF734STW bigWig fold change over control ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF447SWP, ENCFF475DWJ, ENCFF621RXC 2324481800 ENCODE Processing Pipeline eec3d4767ce4bf44ab09ca6b42262da9 https://www.encodeproject.org/files/ENCFF734STW/@@download/ENCFF734STW.bigWig GRCh38 released antibody characterized with exemption ENCFF626ANI bigWig fold change over control ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF024FHS, ENCFF475DWJ, ENCFF621RXC 1945445421 ENCODE Processing Pipeline 407fe4f07f2519c72f0c2a4ab2557adc https://www.encodeproject.org/files/ENCFF626ANI/@@download/ENCFF626ANI.bigWig GRCh38 released antibody characterized with exemption ENCFF671CFA bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF024FHS, ENCFF475DWJ, ENCFF621RXC 6825729 ENCODE Processing Pipeline 34482067aa65d2579518c9749aa4ae00 https://www.encodeproject.org/files/ENCFF671CFA/@@download/ENCFF671CFA.bed.gz GRCh38 released antibody characterized with exemption ENCFF578EQB bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF024FHS, ENCFF447SWP, ENCFF475DWJ, ENCFF621RXC 7210847 ENCODE Processing Pipeline b949b7c86bdf1da9ab26569595996ab4 https://www.encodeproject.org/files/ENCFF578EQB/@@download/ENCFF578EQB.bed.gz GRCh38 released antibody characterized with exemption ENCFF509MTK bigBed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF671CFA 11368467 ENCODE Processing Pipeline 41bbca3022befdf270810f56cb35c742 https://www.encodeproject.org/files/ENCFF509MTK/@@download/ENCFF509MTK.bigBed GRCh38 released antibody characterized with exemption ENCFF388USP bigWig fold change over control ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF024FHS, ENCFF447SWP, ENCFF475DWJ, ENCFF621RXC 2764652762 ENCODE Processing Pipeline 8872e172a20b50bf42bcc551b3ef6a08 https://www.encodeproject.org/files/ENCFF388USP/@@download/ENCFF388USP.bigWig GRCh38 released antibody characterized with exemption ENCFF269FVL bigBed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF578EQB 11258773 ENCODE Processing Pipeline 525fc5be520e3a111508e8844c582f0e https://www.encodeproject.org/files/ENCFF269FVL/@@download/ENCFF269FVL.bigBed GRCh38 released antibody characterized with exemption ENCFF543JZA bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF447SWP, ENCFF475DWJ, ENCFF621RXC 7053185 ENCODE Processing Pipeline aa5352cfe284e0575c50018cc1eb305f https://www.encodeproject.org/files/ENCFF543JZA/@@download/ENCFF543JZA.bed.gz GRCh38 released antibody characterized with exemption ENCFF657ZXY bed narrowPeak optimal idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF543JZA, ENCFF578EQB, ENCFF671CFA 28650 ENCODE Processing Pipeline 90e070720592457688833e78ff33b515 https://www.encodeproject.org/files/ENCFF657ZXY/@@download/ENCFF657ZXY.bed.gz GRCh38 released antibody characterized with exemption ENCFF802SQS bed narrowPeak conservative idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF543JZA, ENCFF578EQB, ENCFF671CFA 17004 ENCODE Processing Pipeline ec93666f3b40fc48284c68bbaf78c2a9 https://www.encodeproject.org/files/ENCFF802SQS/@@download/ENCFF802SQS.bed.gz GRCh38 released antibody characterized with exemption ENCFF521EUL bigBed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF543JZA 11351937 ENCODE Processing Pipeline 3158aba6a61ca451b2b1df8a5029742c https://www.encodeproject.org/files/ENCFF521EUL/@@download/ENCFF521EUL.bigBed GRCh38 released antibody characterized with exemption ENCFF165UQM bigBed narrowPeak conservative idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF802SQS 92872 ENCODE Processing Pipeline fafb470d61bac564bdc8b4789229cf84 https://www.encodeproject.org/files/ENCFF165UQM/@@download/ENCFF165UQM.bigBed GRCh38 released antibody characterized with exemption ENCFF694DDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF657ZXY 99765 ENCODE Processing Pipeline 6a0e578e9b5acbaa03519420858b82a3 https://www.encodeproject.org/files/ENCFF694DDQ/@@download/ENCFF694DDQ.bigBed GRCh38 released antibody characterized with exemption ENCFF879EHU bam unfiltered alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 100 ENCFF542CMJ, ENCFF780YRV, ENCFF807MUK 7622843029 ENCODE Processing Pipeline 32d24a7bdcce147da0d860d4e13cd9bb https://www.encodeproject.org/files/ENCFF879EHU/@@download/ENCFF879EHU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF150UXA bam unfiltered alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 100 ENCFF548RTA, ENCFF807MUK, ENCFF916QKA 8527542380 ENCODE Processing Pipeline 7b16d74b1c27e8746934e5eb192057a3 https://www.encodeproject.org/files/ENCFF150UXA/@@download/ENCFF150UXA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF548RTA fastq reads ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 1 ENCFF916QKA 4060677456 Michael Snyder, Stanford 596696f328e50409679b057b472646ec SRA:SRR5112401 https://www.encodeproject.org/files/ENCFF548RTA/@@download/ENCFF548RTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF622ATI/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF916QKA fastq reads ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 2 ENCFF548RTA 4156359325 Michael Snyder, Stanford 4e74a50a66983ae9949874ad6a913373 SRA:SRR5112401 https://www.encodeproject.org/files/ENCFF916QKA/@@download/ENCFF916QKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF114DVM/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF780YRV fastq reads ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF542CMJ 3615147983 Michael Snyder, Stanford 9f55b79ba7f5d153c4293886a54431a9 SRA:SRR5112402 https://www.encodeproject.org/files/ENCFF780YRV/@@download/ENCFF780YRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF114DVM/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF542CMJ fastq reads ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF780YRV 3537758153 Michael Snyder, Stanford 7aa1cc7e50456a75267fa670c4174ac1 SRA:SRR5112402 https://www.encodeproject.org/files/ENCFF542CMJ/@@download/ENCFF542CMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF622ATI/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF891JES bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 100 ENCFF542CMJ, ENCFF780YRV, ENCFF807MUK 5876528880 ENCODE Processing Pipeline 48bf8e074130680450cb3ec3d7aca02c https://www.encodeproject.org/files/ENCFF891JES/@@download/ENCFF891JES.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF614AZS bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 100 ENCFF548RTA, ENCFF807MUK, ENCFF916QKA 5772332460 ENCODE Processing Pipeline d6d9ec4b67a0b22dc9bbd4395905b9d0 https://www.encodeproject.org/files/ENCFF614AZS/@@download/ENCFF614AZS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF214XHJ bigWig signal p-value ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF242FHJ, ENCFF891JES 1216516350 ENCODE Processing Pipeline aa1cdfa9ca474ab9b826d87481743eb1 https://www.encodeproject.org/files/ENCFF214XHJ/@@download/ENCFF214XHJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF800MTW bigWig fold change over control ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF242FHJ, ENCFF614AZS 1235019444 ENCODE Processing Pipeline b2840678315565df783663c226f34c9e https://www.encodeproject.org/files/ENCFF800MTW/@@download/ENCFF800MTW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF687HID bigWig fold change over control ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF242FHJ, ENCFF891JES 1202962810 ENCODE Processing Pipeline d07d0a4405af1ebacbfe2c2b0bf57df1 https://www.encodeproject.org/files/ENCFF687HID/@@download/ENCFF687HID.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF767ZAZ bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF242FHJ, ENCFF614AZS, ENCFF891JES 7294856 ENCODE Processing Pipeline edd8d0f8099063cffdbc8f55a48a1cd1 https://www.encodeproject.org/files/ENCFF767ZAZ/@@download/ENCFF767ZAZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF219QWC bigWig signal p-value ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF242FHJ, ENCFF614AZS, ENCFF891JES 1226739831 ENCODE Processing Pipeline c49502ca87fa1146729c97fd627618d8 https://www.encodeproject.org/files/ENCFF219QWC/@@download/ENCFF219QWC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF625YNL bigBed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF244XAR 13055873 ENCODE Processing Pipeline 497da13c3d444996a48b1a3f2499eb3c https://www.encodeproject.org/files/ENCFF625YNL/@@download/ENCFF625YNL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF185EMV bigWig signal p-value ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF242FHJ, ENCFF614AZS 1243110900 ENCODE Processing Pipeline ed5efe3bd9b86f4e8aefe2983f4ea439 https://www.encodeproject.org/files/ENCFF185EMV/@@download/ENCFF185EMV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF367HWH bigWig fold change over control ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF242FHJ, ENCFF614AZS, ENCFF891JES 1851883568 ENCODE Processing Pipeline 742e15fd80260f923d1f6b118bf4b5c4 https://www.encodeproject.org/files/ENCFF367HWH/@@download/ENCFF367HWH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF464FVG bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF242FHJ, ENCFF891JES 7036651 ENCODE Processing Pipeline ccdcaf9293bb0c0d8e5b0cd30f95ece0 https://www.encodeproject.org/files/ENCFF464FVG/@@download/ENCFF464FVG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF244XAR bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF242FHJ, ENCFF614AZS 7030599 ENCODE Processing Pipeline 09abb517586ae010888de294cb016b61 https://www.encodeproject.org/files/ENCFF244XAR/@@download/ENCFF244XAR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF233ZCQ bigBed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF464FVG 13053915 ENCODE Processing Pipeline e1f3ee4a91a9e1ab2728b7c9f2656ad5 https://www.encodeproject.org/files/ENCFF233ZCQ/@@download/ENCFF233ZCQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF327TEA bigBed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF767ZAZ 12960742 ENCODE Processing Pipeline abdb919c7a8ca9b5ab5a08588266f2f4 https://www.encodeproject.org/files/ENCFF327TEA/@@download/ENCFF327TEA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF197AGW bam unfiltered alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 100 ENCFF542CMJ, ENCFF643CGH, ENCFF780YRV 7632936125 ENCODE Processing Pipeline 06bbfe9c521c80576554b845bcc19a12 https://www.encodeproject.org/files/ENCFF197AGW/@@download/ENCFF197AGW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF695GTB bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 100 ENCFF542CMJ, ENCFF643CGH, ENCFF780YRV 5878034614 ENCODE Processing Pipeline b919bdc5db834052e7a3f257e6b12779 https://www.encodeproject.org/files/ENCFF695GTB/@@download/ENCFF695GTB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF090EWM bam unfiltered alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 100 ENCFF548RTA, ENCFF643CGH, ENCFF916QKA 8535368939 ENCODE Processing Pipeline ad7ef42dd381d3246283e28802e337f2 https://www.encodeproject.org/files/ENCFF090EWM/@@download/ENCFF090EWM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF115BME bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 100 ENCFF548RTA, ENCFF643CGH, ENCFF916QKA 5773969876 ENCODE Processing Pipeline 6fbd876dab9614c9c58e309fe55ef2fa https://www.encodeproject.org/files/ENCFF115BME/@@download/ENCFF115BME.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF962JHR bigWig signal p-value ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF059OPC, ENCFF695GTB 1218353209 ENCODE Processing Pipeline 6a0443cf9b46d9d1966d1f63e3b83aca https://www.encodeproject.org/files/ENCFF962JHR/@@download/ENCFF962JHR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF181SRY bigWig signal p-value ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF059OPC, ENCFF115BME 1249742201 ENCODE Processing Pipeline 54922bcd6dd05b8762487c688488a0b6 https://www.encodeproject.org/files/ENCFF181SRY/@@download/ENCFF181SRY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF711UGQ bigWig signal p-value ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF059OPC, ENCFF115BME, ENCFF695GTB 1218648107 ENCODE Processing Pipeline 87cfdaf849b90e8f5095c85e7eef1bee https://www.encodeproject.org/files/ENCFF711UGQ/@@download/ENCFF711UGQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF689WAF bigWig fold change over control ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF059OPC, ENCFF695GTB 1207458389 ENCODE Processing Pipeline 6134c2d6509a65973462ed679b39844e https://www.encodeproject.org/files/ENCFF689WAF/@@download/ENCFF689WAF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF606XIM bigWig fold change over control ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF059OPC, ENCFF115BME 1238813360 ENCODE Processing Pipeline 433376b5d44604ce864600c466f4c676 https://www.encodeproject.org/files/ENCFF606XIM/@@download/ENCFF606XIM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF411ROG bigWig fold change over control ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF059OPC, ENCFF115BME, ENCFF695GTB 1843072173 ENCODE Processing Pipeline a5927080f6fc1435f664136e4ca773bf https://www.encodeproject.org/files/ENCFF411ROG/@@download/ENCFF411ROG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF363HUX bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF059OPC, ENCFF695GTB 6976623 ENCODE Processing Pipeline acae3c176f8c8063aab1f0537f0745ea https://www.encodeproject.org/files/ENCFF363HUX/@@download/ENCFF363HUX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF380CHE bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF059OPC, ENCFF115BME 6962935 ENCODE Processing Pipeline c95ebc18ec087162c551bd016770f18a https://www.encodeproject.org/files/ENCFF380CHE/@@download/ENCFF380CHE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF723UBG bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF059OPC, ENCFF115BME, ENCFF695GTB 7298045 ENCODE Processing Pipeline cd88aa0117d4a602315369482a4a59c7 https://www.encodeproject.org/files/ENCFF723UBG/@@download/ENCFF723UBG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF833ORC bigBed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF380CHE 13079208 ENCODE Processing Pipeline 6b9f21b07c9738fa7d5a649b47920435 https://www.encodeproject.org/files/ENCFF833ORC/@@download/ENCFF833ORC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF580AVL bigBed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF363HUX 13076079 ENCODE Processing Pipeline 8eb0647f813e27b2624e3de09dde1dd3 https://www.encodeproject.org/files/ENCFF580AVL/@@download/ENCFF580AVL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF195LJB bigBed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF723UBG 12989316 ENCODE Processing Pipeline f4d73a4653abd6a75d79a5caf2ebca26 https://www.encodeproject.org/files/ENCFF195LJB/@@download/ENCFF195LJB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF516VRH bigBed narrowPeak conservative idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF815REG 822735 ENCODE Processing Pipeline 06182561462c954e87ea74e3e651e87e https://www.encodeproject.org/files/ENCFF516VRH/@@download/ENCFF516VRH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF815REG bed narrowPeak conservative idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF363HUX, ENCFF380CHE, ENCFF419RSJ, ENCFF723UBG 359849 ENCODE Processing Pipeline 29a3e6d2b254185994479efa6057fd2b https://www.encodeproject.org/files/ENCFF815REG/@@download/ENCFF815REG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF638WDU bed narrowPeak optimal idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF363HUX, ENCFF380CHE, ENCFF419RSJ, ENCFF723UBG 452199 ENCODE Processing Pipeline f5df8fa0af9688603bfec4e9a641a7f9 https://www.encodeproject.org/files/ENCFF638WDU/@@download/ENCFF638WDU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF468VTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF638WDU 990892 ENCODE Processing Pipeline 224cf4925f010984c6189fae10972221 https://www.encodeproject.org/files/ENCFF468VTJ/@@download/ENCFF468VTJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF747JCC bigBed narrowPeak conservative idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF792DSI 595055 ENCODE Processing Pipeline feec15013d10815eeb436a8b5bc3d27e https://www.encodeproject.org/files/ENCFF747JCC/@@download/ENCFF747JCC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF835YLR bed narrowPeak optimal idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF244XAR, ENCFF464FVG, ENCFF767ZAZ 376136 ENCODE Processing Pipeline f318a5df6df3b0f5af86990b56d56fe1 https://www.encodeproject.org/files/ENCFF835YLR/@@download/ENCFF835YLR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF698DFW bigBed narrowPeak optimal idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF835YLR 719765 ENCODE Processing Pipeline 984e5ff05db76d77b2d54dcf8c0835e9 https://www.encodeproject.org/files/ENCFF698DFW/@@download/ENCFF698DFW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF792DSI bed narrowPeak conservative idr thresholded peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF244XAR, ENCFF464FVG, ENCFF767ZAZ 290783 ENCODE Processing Pipeline a3e585939b9783d2498a5048909eb2b1 https://www.encodeproject.org/files/ENCFF792DSI/@@download/ENCFF792DSI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF939LGE bam unfiltered alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF034CSX, ENCFF807MUK, ENCFF919QDE 3748955806 ENCODE Processing Pipeline d01e96e863248ff27c9298bb8b419ecb https://www.encodeproject.org/files/ENCFF939LGE/@@download/ENCFF939LGE.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF750SDO bam unfiltered alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF517OWM, ENCFF807MUK, ENCFF871YPD 5436288599 ENCODE Processing Pipeline 1d4f366796627d242204712296cbbd7e https://www.encodeproject.org/files/ENCFF750SDO/@@download/ENCFF750SDO.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF871YPD fastq reads ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF517OWM 2665922318 Michael Snyder, Stanford 48e93287c731aaebf76544ce0fbce53c SRA:SRR5111603 https://www.encodeproject.org/files/ENCFF871YPD/@@download/ENCFF871YPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF517OWM fastq reads ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF871YPD 2529102529 Michael Snyder, Stanford 16d6efc238732415c34b547ecacad3ca SRA:SRR5111603 https://www.encodeproject.org/files/ENCFF517OWM/@@download/ENCFF517OWM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF919QDE fastq reads ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF034CSX 1771064112 Michael Snyder, Stanford 54cabe416864e686cd2161d78657e096 SRA:SRR5111602 https://www.encodeproject.org/files/ENCFF919QDE/@@download/ENCFF919QDE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF034CSX fastq reads ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF919QDE 1793882598 Michael Snyder, Stanford 740ce175817a2fc59f04bd5441eab3dc SRA:SRR5111602 https://www.encodeproject.org/files/ENCFF034CSX/@@download/ENCFF034CSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF530XAQ bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF034CSX, ENCFF807MUK, ENCFF919QDE 3005093588 ENCODE Processing Pipeline 44d7f71b8900a0c78246076f20884ab7 https://www.encodeproject.org/files/ENCFF530XAQ/@@download/ENCFF530XAQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF233IID bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF517OWM, ENCFF807MUK, ENCFF871YPD 3939101728 ENCODE Processing Pipeline d3d4491d150a2fa7c1be3db71c65b56c https://www.encodeproject.org/files/ENCFF233IID/@@download/ENCFF233IID.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF713JQU bigWig signal p-value ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF530XAQ, ENCFF581ZJL 903917571 ENCODE Processing Pipeline 7396290222c48423821ad4389893a6f0 https://www.encodeproject.org/files/ENCFF713JQU/@@download/ENCFF713JQU.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF745HMO bigWig signal p-value ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF233IID 1077728229 ENCODE Processing Pipeline e358a051651a62d46ad0ba99e712786f https://www.encodeproject.org/files/ENCFF745HMO/@@download/ENCFF745HMO.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF808OOA bigWig signal p-value ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF233IID, ENCFF530XAQ, ENCFF581ZJL 1701353077 ENCODE Processing Pipeline 96a7dd693939dcdbf1327c09e885e53f https://www.encodeproject.org/files/ENCFF808OOA/@@download/ENCFF808OOA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF617KYS bigWig fold change over control ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF530XAQ, ENCFF581ZJL 973975195 ENCODE Processing Pipeline 0f6494201a16de6d9cdf74cb0e1f487a https://www.encodeproject.org/files/ENCFF617KYS/@@download/ENCFF617KYS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF757WQB bigWig fold change over control ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF233IID 1079513595 ENCODE Processing Pipeline 9e7279958950ae754bb30b74991fce92 https://www.encodeproject.org/files/ENCFF757WQB/@@download/ENCFF757WQB.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF645PUW bigWig fold change over control ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF233IID, ENCFF530XAQ, ENCFF581ZJL 1951465679 ENCODE Processing Pipeline 901c6e7ed25574a1aa6b7a38bdffbc36 https://www.encodeproject.org/files/ENCFF645PUW/@@download/ENCFF645PUW.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF221YZK bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF530XAQ, ENCFF581ZJL 6885176 ENCODE Processing Pipeline c1e525a49f7412ded1a318d271cfeeda https://www.encodeproject.org/files/ENCFF221YZK/@@download/ENCFF221YZK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF873ZUQ bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF233IID 6929067 ENCODE Processing Pipeline e474c90e1cb307a33e2f01fe1d28d6e2 https://www.encodeproject.org/files/ENCFF873ZUQ/@@download/ENCFF873ZUQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF113GBF bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF233IID, ENCFF530XAQ, ENCFF581ZJL 7265651 ENCODE Processing Pipeline 71b3437d73c0c5e183b5f44e7c76ae45 https://www.encodeproject.org/files/ENCFF113GBF/@@download/ENCFF113GBF.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF690IPE bigBed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF873ZUQ 13149635 ENCODE Processing Pipeline 2f0dfe3d028d432d29d11e365ea958c0 https://www.encodeproject.org/files/ENCFF690IPE/@@download/ENCFF690IPE.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF392YGM bigBed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF221YZK 12975506 ENCODE Processing Pipeline f814cca783a8923e72a53f101424ffc7 https://www.encodeproject.org/files/ENCFF392YGM/@@download/ENCFF392YGM.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF903IAE bigBed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF113GBF 13061836 ENCODE Processing Pipeline cc41b6cefadba38cc660c439770de675 https://www.encodeproject.org/files/ENCFF903IAE/@@download/ENCFF903IAE.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF278JTC bam unfiltered alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF034CSX, ENCFF643CGH, ENCFF919QDE 3751592657 ENCODE Processing Pipeline ab306a81027ccb88959e810247a388eb https://www.encodeproject.org/files/ENCFF278JTC/@@download/ENCFF278JTC.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF035YWU bam unfiltered alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF517OWM, ENCFF643CGH, ENCFF871YPD 5440788967 ENCODE Processing Pipeline a71d473c2d4c9042803e68f348d7fb28 https://www.encodeproject.org/files/ENCFF035YWU/@@download/ENCFF035YWU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF677JTW bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF034CSX, ENCFF643CGH, ENCFF919QDE 3007269920 ENCODE Processing Pipeline 7bda913a78f00c6be4658dee12a82dd2 https://www.encodeproject.org/files/ENCFF677JTW/@@download/ENCFF677JTW.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF921IAQ bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF517OWM, ENCFF643CGH, ENCFF871YPD 3941423913 ENCODE Processing Pipeline fd4937419f5a0d3a75771c14ead719a8 https://www.encodeproject.org/files/ENCFF921IAQ/@@download/ENCFF921IAQ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF745KBP bigWig signal p-value ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF677JTW, ENCFF910IKB 921104656 ENCODE Processing Pipeline e96ea40f8e1c14afce50ea6815ea206d https://www.encodeproject.org/files/ENCFF745KBP/@@download/ENCFF745KBP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF250CUR bigWig signal p-value ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF921IAQ 1176550057 ENCODE Processing Pipeline 97c9cdfa0bbc3e2289dfc6e16a32638c https://www.encodeproject.org/files/ENCFF250CUR/@@download/ENCFF250CUR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF840VLD bigWig signal p-value ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF677JTW, ENCFF910IKB, ENCFF921IAQ 1676566559 ENCODE Processing Pipeline 17b3b4309ea0914825d19e0791e1b6ac https://www.encodeproject.org/files/ENCFF840VLD/@@download/ENCFF840VLD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF354MLS bigWig fold change over control ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF677JTW, ENCFF910IKB 982368473 ENCODE Processing Pipeline 80e7bff511a56586bfa472b9e14d3909 https://www.encodeproject.org/files/ENCFF354MLS/@@download/ENCFF354MLS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF837BQA bigWig fold change over control ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF921IAQ 1074872561 ENCODE Processing Pipeline 8533d711573370b1b25552178e95a81f https://www.encodeproject.org/files/ENCFF837BQA/@@download/ENCFF837BQA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF412CHL bigWig fold change over control ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF677JTW, ENCFF910IKB, ENCFF921IAQ 1965670732 ENCODE Processing Pipeline e5f8340e9aa76aeef1e6a9356bcde9c4 https://www.encodeproject.org/files/ENCFF412CHL/@@download/ENCFF412CHL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF721IEI bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF677JTW, ENCFF910IKB 6896401 ENCODE Processing Pipeline d7e66e9fb69a79fe7ca8bfb8f141c140 https://www.encodeproject.org/files/ENCFF721IEI/@@download/ENCFF721IEI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF496FSD bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF921IAQ 6919479 ENCODE Processing Pipeline 84950b2e86b94b363dba0e762af5bfe6 https://www.encodeproject.org/files/ENCFF496FSD/@@download/ENCFF496FSD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF513MBZ bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF677JTW, ENCFF910IKB, ENCFF921IAQ 7165764 ENCODE Processing Pipeline 77ed071150e5a7f4fd4c7255cdff21f5 https://www.encodeproject.org/files/ENCFF513MBZ/@@download/ENCFF513MBZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF031SFM bigBed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF721IEI 13069350 ENCODE Processing Pipeline 778b7d38c7f12e4a8d7a51dac5c6081a https://www.encodeproject.org/files/ENCFF031SFM/@@download/ENCFF031SFM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF274JDL bigBed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF496FSD 13234842 ENCODE Processing Pipeline f89bd7425134438676aaaadd66fa9b3e https://www.encodeproject.org/files/ENCFF274JDL/@@download/ENCFF274JDL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF287BWE bigBed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF513MBZ 12962979 ENCODE Processing Pipeline 4206ff05799106168d38d79e00d3eb0d https://www.encodeproject.org/files/ENCFF287BWE/@@download/ENCFF287BWE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF410AIK bed narrowPeak conservative idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF496FSD, ENCFF513MBZ, ENCFF721IEI 823921 ENCODE Processing Pipeline ee71e829565cd6295cda45d76c7dd53c https://www.encodeproject.org/files/ENCFF410AIK/@@download/ENCFF410AIK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF308EHU bigBed narrowPeak conservative idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF410AIK 1823230 ENCODE Processing Pipeline 8675153028a377a0445e63568742e33b https://www.encodeproject.org/files/ENCFF308EHU/@@download/ENCFF308EHU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF188TBM bed narrowPeak optimal idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF496FSD, ENCFF513MBZ, ENCFF721IEI 917615 ENCODE Processing Pipeline fb05b3614c249aebaa15b71588273a47 https://www.encodeproject.org/files/ENCFF188TBM/@@download/ENCFF188TBM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF821VTI bigBed narrowPeak optimal idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF188TBM 1990537 ENCODE Processing Pipeline 3654074044b94a3a0b35f11e675e5054 https://www.encodeproject.org/files/ENCFF821VTI/@@download/ENCFF821VTI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF925QJY bed narrowPeak conservative idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF113GBF, ENCFF221YZK, ENCFF873ZUQ 714422 ENCODE Processing Pipeline 317638949f22b9bfc1969222e65adab9 https://www.encodeproject.org/files/ENCFF925QJY/@@download/ENCFF925QJY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF799EGD bigBed narrowPeak conservative idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF925QJY 1313499 ENCODE Processing Pipeline 6a171112404341ded048e0778be598d1 https://www.encodeproject.org/files/ENCFF799EGD/@@download/ENCFF799EGD.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF019ALY bed narrowPeak optimal idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF113GBF, ENCFF221YZK, ENCFF873ZUQ 807730 ENCODE Processing Pipeline 6e5b27278b7140bede72c439e1f952d4 https://www.encodeproject.org/files/ENCFF019ALY/@@download/ENCFF019ALY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF401SGX bigBed narrowPeak optimal idr thresholded peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF019ALY 1435263 ENCODE Processing Pipeline 9c1352cceea2394dc716a3504b19e4c1 https://www.encodeproject.org/files/ENCFF401SGX/@@download/ENCFF401SGX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF317AJS bam unfiltered alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 100 ENCFF391EFO, ENCFF493AAY, ENCFF807MUK 6737370185 ENCODE Processing Pipeline e206b7a4cfd6e686f327b5417209835c https://www.encodeproject.org/files/ENCFF317AJS/@@download/ENCFF317AJS.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF293AFU bam unfiltered alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 100 ENCFF351UCM, ENCFF393ANW, ENCFF807MUK 7564660534 ENCODE Processing Pipeline 5cc670a5c8bc24e38a8a528833081542 https://www.encodeproject.org/files/ENCFF293AFU/@@download/ENCFF293AFU.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF393ANW fastq reads ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 1 ENCFF351UCM 3694010176 Michael Snyder, Stanford 244572a9eef6a16b35c9d92c3b3454c9 SRA:SRR5112193 https://www.encodeproject.org/files/ENCFF393ANW/@@download/ENCFF393ANW.fastq.gz Illumina HiSeq 2000 /files/ENCFF047NSE/ released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF391EFO fastq reads ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF493AAY 3348786595 Michael Snyder, Stanford 4276866089eef9c9fa9ada40b0344eee SRA:SRR5112194 https://www.encodeproject.org/files/ENCFF391EFO/@@download/ENCFF391EFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF743SMH/ released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF351UCM fastq reads ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 2 ENCFF393ANW 3808048925 Michael Snyder, Stanford 152ea6050107a90b65bb32a7dad8b658 SRA:SRR5112193 https://www.encodeproject.org/files/ENCFF351UCM/@@download/ENCFF351UCM.fastq.gz Illumina HiSeq 2000 /files/ENCFF743SMH/ released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF493AAY fastq reads ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF391EFO 3247716115 Michael Snyder, Stanford 9279c92c15e9e314f48e1468fe354a49 SRA:SRR5112194 https://www.encodeproject.org/files/ENCFF493AAY/@@download/ENCFF493AAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF047NSE/ released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF107MLR bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 100 ENCFF351UCM, ENCFF393ANW, ENCFF807MUK 4433146397 ENCODE Processing Pipeline d77f9d8c8b50044841ffefda1a577092 https://www.encodeproject.org/files/ENCFF107MLR/@@download/ENCFF107MLR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF301KAZ bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 100 ENCFF391EFO, ENCFF493AAY, ENCFF807MUK 4131118465 ENCODE Processing Pipeline b78d7332c698bf6cf957c67c2ab908eb https://www.encodeproject.org/files/ENCFF301KAZ/@@download/ENCFF301KAZ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF541KYJ bigWig signal p-value ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF107MLR, ENCFF252CHQ, ENCFF301KAZ 1311717566 ENCODE Processing Pipeline d1bfbe9b8b05f983522412ee1725afd1 https://www.encodeproject.org/files/ENCFF541KYJ/@@download/ENCFF541KYJ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF849QGK bigWig fold change over control ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF107MLR, ENCFF252CHQ 1133003767 ENCODE Processing Pipeline 512bc9afd8ed50c4b996f3f8e88ae117 https://www.encodeproject.org/files/ENCFF849QGK/@@download/ENCFF849QGK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF156FQS bigWig fold change over control ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF107MLR, ENCFF252CHQ, ENCFF301KAZ 1671717838 ENCODE Processing Pipeline 705f2269418513381bae3596f2089284 https://www.encodeproject.org/files/ENCFF156FQS/@@download/ENCFF156FQS.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF220RNG bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF107MLR, ENCFF252CHQ 6606473 ENCODE Processing Pipeline 43932076034d45a823611b45b7834918 https://www.encodeproject.org/files/ENCFF220RNG/@@download/ENCFF220RNG.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF317AUR bigWig signal p-value ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF252CHQ, ENCFF301KAZ 979295076 ENCODE Processing Pipeline 3df360c75d47ce304cadc9a3b3f12ae6 https://www.encodeproject.org/files/ENCFF317AUR/@@download/ENCFF317AUR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF929RXL bigBed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF220RNG 13210202 ENCODE Processing Pipeline 6fe282ec9f69e48b89140b552f023e6f https://www.encodeproject.org/files/ENCFF929RXL/@@download/ENCFF929RXL.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF093SFZ bigWig signal p-value ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF107MLR, ENCFF252CHQ 1124540908 ENCODE Processing Pipeline f7577f0df8bcc537b4f953ad1e7c6368 https://www.encodeproject.org/files/ENCFF093SFZ/@@download/ENCFF093SFZ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF867FAH bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF252CHQ, ENCFF301KAZ 6432766 ENCODE Processing Pipeline 9f722049e31e1819e6720a49090a9aea https://www.encodeproject.org/files/ENCFF867FAH/@@download/ENCFF867FAH.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF105YLZ bigWig fold change over control ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF252CHQ, ENCFF301KAZ 1087567569 ENCODE Processing Pipeline 88c6c58dae1baaa836fa9cb5d275e8e7 https://www.encodeproject.org/files/ENCFF105YLZ/@@download/ENCFF105YLZ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF184YPD bigBed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF690UHD 13175734 ENCODE Processing Pipeline 9801c9ebebf03ac671fde15af2a20d7c https://www.encodeproject.org/files/ENCFF184YPD/@@download/ENCFF184YPD.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF690UHD bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF107MLR, ENCFF252CHQ, ENCFF301KAZ 7204826 ENCODE Processing Pipeline 049afae9508ac7be86a5e93e1e645d93 https://www.encodeproject.org/files/ENCFF690UHD/@@download/ENCFF690UHD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF046DMS bigBed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF867FAH 13288286 ENCODE Processing Pipeline 727ab7356c97d8ccaaad28ffe2c3b7fa https://www.encodeproject.org/files/ENCFF046DMS/@@download/ENCFF046DMS.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF068FBW bam unfiltered alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 100 ENCFF391EFO, ENCFF493AAY, ENCFF643CGH 6738712337 ENCODE Processing Pipeline b68dd8822879c4a58aca3b2a4d55628d https://www.encodeproject.org/files/ENCFF068FBW/@@download/ENCFF068FBW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF150IJU bam unfiltered alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 100 ENCFF351UCM, ENCFF393ANW, ENCFF643CGH 7564164500 ENCODE Processing Pipeline 0d532aca18ca4b7479cbf82e2220bbc3 https://www.encodeproject.org/files/ENCFF150IJU/@@download/ENCFF150IJU.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF997BDJ bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 100 ENCFF391EFO, ENCFF493AAY, ENCFF643CGH 4133545622 ENCODE Processing Pipeline 1e0a9d7ddd4d21f2b038716fd03a5201 https://www.encodeproject.org/files/ENCFF997BDJ/@@download/ENCFF997BDJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF285FGV bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 100 ENCFF351UCM, ENCFF393ANW, ENCFF643CGH 4435611242 ENCODE Processing Pipeline 63b21110a9e393181370e53662dd9f1b https://www.encodeproject.org/files/ENCFF285FGV/@@download/ENCFF285FGV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF145REP bigWig signal p-value ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF399WOX, ENCFF997BDJ 866223573 ENCODE Processing Pipeline 4db9da5c4bf747702329db45b823990f https://www.encodeproject.org/files/ENCFF145REP/@@download/ENCFF145REP.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF669QDZ bigWig signal p-value ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF285FGV, ENCFF399WOX 953450041 ENCODE Processing Pipeline 01e3b2025b84f0bebeeb308da8a59dd7 https://www.encodeproject.org/files/ENCFF669QDZ/@@download/ENCFF669QDZ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF118JQZ bigWig signal p-value ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF285FGV, ENCFF399WOX, ENCFF997BDJ 1284730895 ENCODE Processing Pipeline 32154a3611d74399ddd189a44cdd3d8c https://www.encodeproject.org/files/ENCFF118JQZ/@@download/ENCFF118JQZ.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF359ZLN bigWig fold change over control ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF399WOX, ENCFF997BDJ 1086993792 ENCODE Processing Pipeline c7715efda923cca364db90d055e8d33b https://www.encodeproject.org/files/ENCFF359ZLN/@@download/ENCFF359ZLN.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF040OQT bigWig fold change over control ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF285FGV, ENCFF399WOX 1137547703 ENCODE Processing Pipeline 008b2c82ae21db8a9e9be63909807350 https://www.encodeproject.org/files/ENCFF040OQT/@@download/ENCFF040OQT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF584SIV bigWig fold change over control ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF285FGV, ENCFF399WOX, ENCFF997BDJ 1640092843 ENCODE Processing Pipeline d9e0159d41ed72981436e4b6a01536d1 https://www.encodeproject.org/files/ENCFF584SIV/@@download/ENCFF584SIV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF216QWU bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF285FGV, ENCFF399WOX 6455792 ENCODE Processing Pipeline f5f97d0e5db99572e6c1b0b0b5ff25d9 https://www.encodeproject.org/files/ENCFF216QWU/@@download/ENCFF216QWU.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF256EKC bigBed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF033BMM 13299826 ENCODE Processing Pipeline 00fcf217b832601664abd98b4a4dafb7 https://www.encodeproject.org/files/ENCFF256EKC/@@download/ENCFF256EKC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF868AOX bigBed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF216QWU 13223116 ENCODE Processing Pipeline d9fa0ae31c9ad1c382004564ab0ce0aa https://www.encodeproject.org/files/ENCFF868AOX/@@download/ENCFF868AOX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF033BMM bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF399WOX, ENCFF997BDJ 6272804 ENCODE Processing Pipeline 32c7f37fb807b89f0e4e26f5db0d6c19 https://www.encodeproject.org/files/ENCFF033BMM/@@download/ENCFF033BMM.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF349GBE bed narrowPeak optimal idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF033BMM, ENCFF216QWU, ENCFF419RSJ, ENCFF914ZXX 190898 ENCODE Processing Pipeline 26187d9ca672df310af6a379ceb8ab02 https://www.encodeproject.org/files/ENCFF349GBE/@@download/ENCFF349GBE.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF489ZXV bed narrowPeak conservative idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF033BMM, ENCFF216QWU, ENCFF419RSJ, ENCFF914ZXX 125559 ENCODE Processing Pipeline b0aad1903b66df79384adc9aeefde087 https://www.encodeproject.org/files/ENCFF489ZXV/@@download/ENCFF489ZXV.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF914ZXX bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF285FGV, ENCFF399WOX, ENCFF997BDJ 7147258 ENCODE Processing Pipeline c69b73bcf4729b550a0aafa41f2ecfe8 https://www.encodeproject.org/files/ENCFF914ZXX/@@download/ENCFF914ZXX.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF857JSZ bigBed narrowPeak conservative idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF489ZXV 322569 ENCODE Processing Pipeline 5964563d1a2df78398b17710ada3d1ee https://www.encodeproject.org/files/ENCFF857JSZ/@@download/ENCFF857JSZ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF616AKS bigBed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF914ZXX 13195425 ENCODE Processing Pipeline 956eef2ef4362cbb357be73f8e56214e https://www.encodeproject.org/files/ENCFF616AKS/@@download/ENCFF616AKS.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF506TNB bigBed narrowPeak optimal idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF349GBE 433860 ENCODE Processing Pipeline e68c0977359a2abbc706a7ea3353d44f https://www.encodeproject.org/files/ENCFF506TNB/@@download/ENCFF506TNB.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF939ZFS bed narrowPeak optimal idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF220RNG, ENCFF690UHD, ENCFF867FAH 151716 ENCODE Processing Pipeline a6a46e86e184939dd243d3fdf746998a https://www.encodeproject.org/files/ENCFF939ZFS/@@download/ENCFF939ZFS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF785WJT bigBed narrowPeak optimal idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF939ZFS 308887 ENCODE Processing Pipeline 213168d94e5325c0d3dfb815af33f9d6 https://www.encodeproject.org/files/ENCFF785WJT/@@download/ENCFF785WJT.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF531QQR bed narrowPeak conservative idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF220RNG, ENCFF690UHD, ENCFF867FAH 100665 ENCODE Processing Pipeline b137a79da588cfb9e64ca67ee265043d https://www.encodeproject.org/files/ENCFF531QQR/@@download/ENCFF531QQR.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF775NTF bigBed narrowPeak conservative idr thresholded peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF531QQR 236998 ENCODE Processing Pipeline e9ddad09c07b9e7b3baba3df2b9b7ac3 https://www.encodeproject.org/files/ENCFF775NTF/@@download/ENCFF775NTF.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF581SXG bam unfiltered alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIU, ENCFF002EIV, ENCFF807MUK 7923154466 ENCODE Processing Pipeline 1244a75b0f5003d55f15eb8e16553c68 https://www.encodeproject.org/files/ENCFF581SXG/@@download/ENCFF581SXG.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF215WVE bam unfiltered alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIW, ENCFF002EIX, ENCFF807MUK 8524858275 ENCODE Processing Pipeline 5817f193bb49fa4bfe5cec38e4296537 https://www.encodeproject.org/files/ENCFF215WVE/@@download/ENCFF215WVE.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EIU fastq reads ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EIV 3775496408 Michael Snyder, Stanford f631b6d67df779e77d2415a7acff49ea https://www.encodeproject.org/files/ENCFF002EIU/@@download/ENCFF002EIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EIV fastq reads ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EIU 3839203805 Michael Snyder, Stanford 8421d3570acc6b44596c78b5d91bc85e https://www.encodeproject.org/files/ENCFF002EIV/@@download/ENCFF002EIV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EIW fastq reads ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EIX 3998964445 Michael Snyder, Stanford 50e4b47b323961c76f5a8c1c40e58ef3 https://www.encodeproject.org/files/ENCFF002EIW/@@download/ENCFF002EIW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EIX fastq reads ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EIW 4074120371 Michael Snyder, Stanford 6994222e9a21a9f4eaa8c1507772c447 https://www.encodeproject.org/files/ENCFF002EIX/@@download/ENCFF002EIX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF456BBA bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIW, ENCFF002EIX, ENCFF807MUK 7563628180 ENCODE Processing Pipeline 681aa4751094ee3a8a9ab42e6a82277d https://www.encodeproject.org/files/ENCFF456BBA/@@download/ENCFF456BBA.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF608THC bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIU, ENCFF002EIV, ENCFF807MUK 6472081985 ENCODE Processing Pipeline d6d1eeaac1c7fb5c2f5c973e0cb10d7e https://www.encodeproject.org/files/ENCFF608THC/@@download/ENCFF608THC.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF556VYH bigWig signal p-value ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL 1745755909 ENCODE Processing Pipeline 967dbeda83ae457fb9133b8f5d788e7b https://www.encodeproject.org/files/ENCFF556VYH/@@download/ENCFF556VYH.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF882BBZ bigWig fold change over control ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL 2004335884 ENCODE Processing Pipeline 9c463a450efefe9a95ad8e17ee635b0d https://www.encodeproject.org/files/ENCFF882BBZ/@@download/ENCFF882BBZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF697BKG bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL 7101030 ENCODE Processing Pipeline 54492898f66cce12a1e6588aa57d738d https://www.encodeproject.org/files/ENCFF697BKG/@@download/ENCFF697BKG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF447BCK bigWig fold change over control ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL, ENCFF608THC 2509377832 ENCODE Processing Pipeline 0b2da485d9fa49876f557b6885eeb441 https://www.encodeproject.org/files/ENCFF447BCK/@@download/ENCFF447BCK.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF327DRE bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL, ENCFF608THC 7203601 ENCODE Processing Pipeline 6efffd3e2107e1279cf8de7e9722011f https://www.encodeproject.org/files/ENCFF327DRE/@@download/ENCFF327DRE.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF248AQP bigWig fold change over control ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF608THC 1470316891 ENCODE Processing Pipeline 99ee2a40d2d3f1e6c27c4df71f4d3282 https://www.encodeproject.org/files/ENCFF248AQP/@@download/ENCFF248AQP.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF173NFG bigWig signal p-value ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF608THC 1238186125 ENCODE Processing Pipeline f84b8f32a7d10ec27bb6a8d8196b5dbd https://www.encodeproject.org/files/ENCFF173NFG/@@download/ENCFF173NFG.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF752QWH bigWig signal p-value ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL, ENCFF608THC 2411898587 ENCODE Processing Pipeline 070672ad981e9ac64bd1d3fc07081bf3 https://www.encodeproject.org/files/ENCFF752QWH/@@download/ENCFF752QWH.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF916GOF bigBed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF509UMD 13596631 ENCODE Processing Pipeline 4089b006f24153d993a210f2399f0311 https://www.encodeproject.org/files/ENCFF916GOF/@@download/ENCFF916GOF.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF414TSG bigBed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF327DRE 13669247 ENCODE Processing Pipeline 81b3b168533af44b11e6f710f0f3f5c4 https://www.encodeproject.org/files/ENCFF414TSG/@@download/ENCFF414TSG.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF509UMD bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF608THC 7038268 ENCODE Processing Pipeline 5859ca935cf7cdbc7c84003370d4dc9e https://www.encodeproject.org/files/ENCFF509UMD/@@download/ENCFF509UMD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF201RKQ bigBed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF697BKG 11342590 ENCODE Processing Pipeline 8ee3072eb3df985b2e9f651d0d56ef95 https://www.encodeproject.org/files/ENCFF201RKQ/@@download/ENCFF201RKQ.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF408TXM bam unfiltered alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIU, ENCFF002EIV, ENCFF643CGH 7931589266 ENCODE Processing Pipeline 2d993278a314f6659614b77a6b355a49 https://www.encodeproject.org/files/ENCFF408TXM/@@download/ENCFF408TXM.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF307ONI bam unfiltered alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIW, ENCFF002EIX, ENCFF643CGH 8536690296 ENCODE Processing Pipeline 19d4cdb3633627c09989cc3194f60671 https://www.encodeproject.org/files/ENCFF307ONI/@@download/ENCFF307ONI.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF796CGI bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIU, ENCFF002EIV, ENCFF643CGH 6472876511 ENCODE Processing Pipeline c3784f1d5be0cfc895efa7cba3919ba0 https://www.encodeproject.org/files/ENCFF796CGI/@@download/ENCFF796CGI.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF031GGC bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIW, ENCFF002EIX, ENCFF643CGH 7566410339 ENCODE Processing Pipeline be85a06ddf2207aa072769ddb0558b57 https://www.encodeproject.org/files/ENCFF031GGC/@@download/ENCFF031GGC.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF866QIN bigWig signal p-value ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF796CGI, ENCFF910IKB 1251154684 ENCODE Processing Pipeline 9c05259f3427000a07f772b41055361a https://www.encodeproject.org/files/ENCFF866QIN/@@download/ENCFF866QIN.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF785NEG bigWig signal p-value ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF031GGC, ENCFF227IZS, ENCFF910IKB 1973180177 ENCODE Processing Pipeline 6739e1994028722c3985341892b7f5bf https://www.encodeproject.org/files/ENCFF785NEG/@@download/ENCFF785NEG.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF700LMU bigWig signal p-value ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF031GGC, ENCFF227IZS, ENCFF796CGI, ENCFF910IKB 2474345222 ENCODE Processing Pipeline 5512c353f87d86a5e9539079a670108c https://www.encodeproject.org/files/ENCFF700LMU/@@download/ENCFF700LMU.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF226YOU bigWig fold change over control ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF796CGI, ENCFF910IKB 1472053188 ENCODE Processing Pipeline 188d7df6bba21531b28fbc5c922c3207 https://www.encodeproject.org/files/ENCFF226YOU/@@download/ENCFF226YOU.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF653GLC bigWig fold change over control ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF031GGC, ENCFF227IZS, ENCFF910IKB 2004745675 ENCODE Processing Pipeline 13c884e9f41c7f2bd4fa085eb8c3033d https://www.encodeproject.org/files/ENCFF653GLC/@@download/ENCFF653GLC.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF454COM bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF796CGI, ENCFF910IKB 6886467 ENCODE Processing Pipeline e24399572315ad109b61ec672901855d https://www.encodeproject.org/files/ENCFF454COM/@@download/ENCFF454COM.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF531RQL bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF031GGC, ENCFF227IZS, ENCFF910IKB 7083389 ENCODE Processing Pipeline d9150bec68466144b9460b9f5e09c795 https://www.encodeproject.org/files/ENCFF531RQL/@@download/ENCFF531RQL.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF095UTS bigBed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF454COM 13509882 ENCODE Processing Pipeline 698510c6a3b530dcb7a63c95c4bee919 https://www.encodeproject.org/files/ENCFF095UTS/@@download/ENCFF095UTS.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF965POF bigWig fold change over control ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF031GGC, ENCFF227IZS, ENCFF796CGI, ENCFF910IKB 2565976422 ENCODE Processing Pipeline 743411d305713619a0443ec702f39ca3 https://www.encodeproject.org/files/ENCFF965POF/@@download/ENCFF965POF.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF133AJO bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF031GGC, ENCFF227IZS, ENCFF796CGI, ENCFF910IKB 7208478 ENCODE Processing Pipeline e871bbf70f367e986cc0045a399afb87 https://www.encodeproject.org/files/ENCFF133AJO/@@download/ENCFF133AJO.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF605NBH bigBed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF531RQL 11372684 ENCODE Processing Pipeline f9598c8a4135d57c9f1a920a72a28b0f https://www.encodeproject.org/files/ENCFF605NBH/@@download/ENCFF605NBH.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF023KAG bed narrowPeak conservative idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF133AJO, ENCFF419RSJ, ENCFF454COM, ENCFF531RQL 741370 ENCODE Processing Pipeline 51e2b2ff7696a45094f6a9afbd0f4be6 https://www.encodeproject.org/files/ENCFF023KAG/@@download/ENCFF023KAG.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF654RNS bigBed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF133AJO 13686427 ENCODE Processing Pipeline f754521dc975735cf64c7ae951625931 https://www.encodeproject.org/files/ENCFF654RNS/@@download/ENCFF654RNS.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF013GIT bigBed narrowPeak conservative idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF023KAG 1517587 ENCODE Processing Pipeline 4e4b2d8f669fc0868ff4928de27f4888 https://www.encodeproject.org/files/ENCFF013GIT/@@download/ENCFF013GIT.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF462CSY bigBed narrowPeak optimal idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF937UEE 1784523 ENCODE Processing Pipeline 927a4571c0cdc4ad92e0842209bd8bf3 https://www.encodeproject.org/files/ENCFF462CSY/@@download/ENCFF462CSY.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF937UEE bed narrowPeak optimal idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF133AJO, ENCFF419RSJ, ENCFF454COM, ENCFF531RQL 918044 ENCODE Processing Pipeline a94e324de7bccb5c31a249ea71e77ec2 https://www.encodeproject.org/files/ENCFF937UEE/@@download/ENCFF937UEE.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF678QHT bed narrowPeak conservative idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF327DRE, ENCFF509UMD, ENCFF697BKG 676074 ENCODE Processing Pipeline f39b04bc51caae688b6649710d3362d4 https://www.encodeproject.org/files/ENCFF678QHT/@@download/ENCFF678QHT.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF613RNG bed narrowPeak optimal idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF327DRE, ENCFF509UMD, ENCFF697BKG 825829 ENCODE Processing Pipeline 5a8a7a2c1d04e8655631cd819f8e4127 https://www.encodeproject.org/files/ENCFF613RNG/@@download/ENCFF613RNG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF653KIC bigBed narrowPeak optimal idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF613RNG 1631844 ENCODE Processing Pipeline 8b293065aab73571d3487e471ef7a13b https://www.encodeproject.org/files/ENCFF653KIC/@@download/ENCFF653KIC.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF706BPD bigBed narrowPeak conservative idr thresholded peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF678QHT 1098556 ENCODE Processing Pipeline d76135c552d2e3a7950fb856cae7f50b https://www.encodeproject.org/files/ENCFF706BPD/@@download/ENCFF706BPD.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF131OXT fastq reads ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF565BCY 2361829995 Michael Snyder, Stanford 903ed842fa21c893664820783311e012 SRA:SRR5111111 https://www.encodeproject.org/files/ENCFF131OXT/@@download/ENCFF131OXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF076GRK fastq reads ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF574XTS 2350450347 Michael Snyder, Stanford 70f1b1dd3619a6e71f96a7794b5f2c2d SRA:SRR5111110 https://www.encodeproject.org/files/ENCFF076GRK/@@download/ENCFF076GRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF574XTS fastq reads ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF076GRK 2407985502 Michael Snyder, Stanford 1d67af1809c9cfed6662f2ef97d71a15 SRA:SRR5111110 https://www.encodeproject.org/files/ENCFF574XTS/@@download/ENCFF574XTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF565BCY fastq reads ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF131OXT 2422805680 Michael Snyder, Stanford 9587fbf38969aa0ce2db78799980ca0d SRA:SRR5111111 https://www.encodeproject.org/files/ENCFF565BCY/@@download/ENCFF565BCY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF032NNK bam unfiltered alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF131OXT, ENCFF565BCY, ENCFF807MUK 5359712286 ENCODE Processing Pipeline 0f0be77637583e409976a61fe6c1baf1 https://www.encodeproject.org/files/ENCFF032NNK/@@download/ENCFF032NNK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF758CGM bam unfiltered alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF076GRK, ENCFF574XTS, ENCFF807MUK 5346677022 ENCODE Processing Pipeline 36b311a50b6a8ff352259ecaa8f9bd7c https://www.encodeproject.org/files/ENCFF758CGM/@@download/ENCFF758CGM.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF158FIE bam unfiltered alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF131OXT, ENCFF565BCY, ENCFF643CGH 5367676707 ENCODE Processing Pipeline 914c04db8995fe8e5f68f73e53df3d6d https://www.encodeproject.org/files/ENCFF158FIE/@@download/ENCFF158FIE.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF145YDT bam unfiltered alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF076GRK, ENCFF574XTS, ENCFF643CGH 5354575495 ENCODE Processing Pipeline a6f054376120d90c46eb2ff40a585008 https://www.encodeproject.org/files/ENCFF145YDT/@@download/ENCFF145YDT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF662QGV bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF131OXT, ENCFF565BCY, ENCFF643CGH 4602365751 ENCODE Processing Pipeline af7c3f69e15a618695c0fbdf3afdb78a https://www.encodeproject.org/files/ENCFF662QGV/@@download/ENCFF662QGV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF107BYB bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF076GRK, ENCFF574XTS, ENCFF643CGH 4650456233 ENCODE Processing Pipeline 2e6959c1f848b739ccf9f55dba7ddf2c https://www.encodeproject.org/files/ENCFF107BYB/@@download/ENCFF107BYB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF060NHQ bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF076GRK, ENCFF574XTS, ENCFF807MUK 4649821319 ENCODE Processing Pipeline 201b0c46f300364ca3ac7ddd816c8ff6 https://www.encodeproject.org/files/ENCFF060NHQ/@@download/ENCFF060NHQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF495BAQ bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF131OXT, ENCFF565BCY, ENCFF807MUK 4601395568 ENCODE Processing Pipeline 1e2e5fad06a66762f1c46bdee116d183 https://www.encodeproject.org/files/ENCFF495BAQ/@@download/ENCFF495BAQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF970IAK bigWig signal p-value ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF060NHQ 1277391133 ENCODE Processing Pipeline fb5198c3bc88579b780e8b34d874daab https://www.encodeproject.org/files/ENCFF970IAK/@@download/ENCFF970IAK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF114SSD bigWig signal p-value ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF495BAQ 1446811594 ENCODE Processing Pipeline 69f31e5f4d3b3a8a87c41a0c770707bf https://www.encodeproject.org/files/ENCFF114SSD/@@download/ENCFF114SSD.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF721YVB bigWig signal p-value ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF060NHQ, ENCFF495BAQ 1980275055 ENCODE Processing Pipeline 33bbe2a04f47955a763ff5ffe450c9eb https://www.encodeproject.org/files/ENCFF721YVB/@@download/ENCFF721YVB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF047REP bigWig fold change over control ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF060NHQ 1407238391 ENCODE Processing Pipeline 58fab16968a1494d23b8f566492fe445 https://www.encodeproject.org/files/ENCFF047REP/@@download/ENCFF047REP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF323FAH bigWig fold change over control ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF495BAQ 1416626693 ENCODE Processing Pipeline cee408b25c9c9096b401710cb5309cd9 https://www.encodeproject.org/files/ENCFF323FAH/@@download/ENCFF323FAH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF296DJJ bigWig fold change over control ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF060NHQ, ENCFF495BAQ 1995481001 ENCODE Processing Pipeline c88d82af4aba60e73d3bfd411ef5abc9 https://www.encodeproject.org/files/ENCFF296DJJ/@@download/ENCFF296DJJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF035JZF bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF060NHQ 6304742 ENCODE Processing Pipeline 7431ea9ad18110b56a5e7431e0963373 https://www.encodeproject.org/files/ENCFF035JZF/@@download/ENCFF035JZF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF567MYL bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF495BAQ 6613574 ENCODE Processing Pipeline 5e2e7c9dc4d2243da1d551e253fc9973 https://www.encodeproject.org/files/ENCFF567MYL/@@download/ENCFF567MYL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF126KMD bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF060NHQ, ENCFF495BAQ 7094692 ENCODE Processing Pipeline 992e0ebcaae75a74cf59230ce893ef0e https://www.encodeproject.org/files/ENCFF126KMD/@@download/ENCFF126KMD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF377NYI bigBed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF035JZF 10967329 ENCODE Processing Pipeline 7e831427d2111dad1d75a9fa2791260b https://www.encodeproject.org/files/ENCFF377NYI/@@download/ENCFF377NYI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF084QKM bigBed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF567MYL 11229826 ENCODE Processing Pipeline b24f358c6c37a3fd49957372bdb2e778 https://www.encodeproject.org/files/ENCFF084QKM/@@download/ENCFF084QKM.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF099VYS bigBed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126KMD 10963749 ENCODE Processing Pipeline ee27a9b3185284edc0d2301f33b85b73 https://www.encodeproject.org/files/ENCFF099VYS/@@download/ENCFF099VYS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF547AEK bed narrowPeak conservative idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF035JZF, ENCFF126KMD, ENCFF567MYL 8599 ENCODE Processing Pipeline 66bd8912a5edfb17b811d4aea4d96ec8 https://www.encodeproject.org/files/ENCFF547AEK/@@download/ENCFF547AEK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF970STM bigBed narrowPeak conservative idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF547AEK 73679 ENCODE Processing Pipeline 7577a77fde8468c6645c6a6ecc442466 https://www.encodeproject.org/files/ENCFF970STM/@@download/ENCFF970STM.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF637SBD bed narrowPeak optimal idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF035JZF, ENCFF126KMD, ENCFF567MYL 18038 ENCODE Processing Pipeline 666bc52045a14237131db8a8e0a1b7fc https://www.encodeproject.org/files/ENCFF637SBD/@@download/ENCFF637SBD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF469BXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF637SBD 92060 ENCODE Processing Pipeline 890c8a8896b3958a3a8896df0de1551c https://www.encodeproject.org/files/ENCFF469BXQ/@@download/ENCFF469BXQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF327JCE bigWig signal p-value ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF107BYB 1363202008 ENCODE Processing Pipeline 2db08c96a5b631583870645cd46bf221 https://www.encodeproject.org/files/ENCFF327JCE/@@download/ENCFF327JCE.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF895DCL bigWig signal p-value ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF662QGV 1304895508 ENCODE Processing Pipeline 300df6f01fe60065151a234fead514d7 https://www.encodeproject.org/files/ENCFF895DCL/@@download/ENCFF895DCL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF472FNQ bigWig signal p-value ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF107BYB, ENCFF662QGV 1951587603 ENCODE Processing Pipeline d10fa6088905f9b2af52c6649d213bd1 https://www.encodeproject.org/files/ENCFF472FNQ/@@download/ENCFF472FNQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF382EXI bigWig fold change over control ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF107BYB 1395086327 ENCODE Processing Pipeline 47220eed29f421304a5c0f5e5ceeeabd https://www.encodeproject.org/files/ENCFF382EXI/@@download/ENCFF382EXI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF418WQC bigWig fold change over control ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF662QGV 1430571374 ENCODE Processing Pipeline 547ac41a0d211062d0757a09e7fc9f07 https://www.encodeproject.org/files/ENCFF418WQC/@@download/ENCFF418WQC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF510GVZ bigWig fold change over control ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF107BYB, ENCFF662QGV 1968619001 ENCODE Processing Pipeline f0b72be9d8ebdd0c296876d438308b0b https://www.encodeproject.org/files/ENCFF510GVZ/@@download/ENCFF510GVZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF802MPW bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF662QGV 6188743 ENCODE Processing Pipeline e2fe3409424f02c6dc050bcf486cf793 https://www.encodeproject.org/files/ENCFF802MPW/@@download/ENCFF802MPW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF756OLI bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF107BYB 6421716 ENCODE Processing Pipeline 788d7ff8edad790c1576ca9dd65c13ef https://www.encodeproject.org/files/ENCFF756OLI/@@download/ENCFF756OLI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF915ZKK bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF107BYB, ENCFF662QGV 6468528 ENCODE Processing Pipeline 121c0daf9746afb9b022d8c7f546184a https://www.encodeproject.org/files/ENCFF915ZKK/@@download/ENCFF915ZKK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF202PUH bigBed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF802MPW 10961141 ENCODE Processing Pipeline 75b24ac8ddbd795d3dddb74bc737a262 https://www.encodeproject.org/files/ENCFF202PUH/@@download/ENCFF202PUH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF450TEF bigBed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF756OLI 11254986 ENCODE Processing Pipeline dfb90cb009de5b966ec29ecddb16fc9c https://www.encodeproject.org/files/ENCFF450TEF/@@download/ENCFF450TEF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF834SEA bed narrowPeak conservative idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF756OLI, ENCFF802MPW, ENCFF915ZKK 8311 ENCODE Processing Pipeline d1cd1da5a63c0646abbedf09cc483ce1 https://www.encodeproject.org/files/ENCFF834SEA/@@download/ENCFF834SEA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF010JVQ bigBed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF915ZKK 10311626 ENCODE Processing Pipeline b5f90875ca357fdb59ee3b22e40f2cea https://www.encodeproject.org/files/ENCFF010JVQ/@@download/ENCFF010JVQ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF004JFD bed narrowPeak optimal idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF756OLI, ENCFF802MPW, ENCFF915ZKK 16958 ENCODE Processing Pipeline 5028a103d9454accdc6a2367a2bb76d7 https://www.encodeproject.org/files/ENCFF004JFD/@@download/ENCFF004JFD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF624ENH bigBed narrowPeak conservative idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF834SEA 64812 ENCODE Processing Pipeline 40e4a4fdef200e1e2925b9389c7d351b https://www.encodeproject.org/files/ENCFF624ENH/@@download/ENCFF624ENH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF396KBF bigBed narrowPeak optimal idr thresholded peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF004JFD 79652 ENCODE Processing Pipeline fdeb054e9ae5833b7469e4e5b19082b0 https://www.encodeproject.org/files/ENCFF396KBF/@@download/ENCFF396KBF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF555UMY bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF373CMX, ENCFF810LLR 1627327301 ENCODE Processing Pipeline 7391f75d5358b53c17ccaf0dc39388fe https://www.encodeproject.org/files/ENCFF555UMY/@@download/ENCFF555UMY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF430ULQ bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF373CMX, ENCFF810LLR 1817912555 ENCODE Processing Pipeline 4401e00388bbaa46a3522ab7b8c55125 https://www.encodeproject.org/files/ENCFF430ULQ/@@download/ENCFF430ULQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF284BIK bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF504BRR, ENCFF810LLR 1642482982 ENCODE Processing Pipeline fc5d34c9c8381581d5d54bbfb47b6104 https://www.encodeproject.org/files/ENCFF284BIK/@@download/ENCFF284BIK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF132LFD bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF504BRR, ENCFF810LLR 1898430033 ENCODE Processing Pipeline 7059f78cfbbf072cded648f62e6caa8e https://www.encodeproject.org/files/ENCFF132LFD/@@download/ENCFF132LFD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF512LPA fastq reads ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF301ONT 3535352989 Michael Snyder, Stanford f5e25cb8ec39402b1363e3e2a3d75d96 SRA:SRR5111491 https://www.encodeproject.org/files/ENCFF512LPA/@@download/ENCFF512LPA.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF755SKN fastq reads ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF895EJG 3139708882 Michael Snyder, Stanford 42ed147eb983559883e30476e1a28c61 SRA:SRR5111492 https://www.encodeproject.org/files/ENCFF755SKN/@@download/ENCFF755SKN.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF301ONT fastq reads ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF512LPA 3680335943 Michael Snyder, Stanford cbb229390714a27cc788f00794b1852e SRA:SRR5111491 https://www.encodeproject.org/files/ENCFF301ONT/@@download/ENCFF301ONT.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF895EJG fastq reads ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF755SKN 3287163331 Michael Snyder, Stanford 855b6198bb4b7984a7c489fdc4d344e8 SRA:SRR5111492 https://www.encodeproject.org/files/ENCFF895EJG/@@download/ENCFF895EJG.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF593OVS bam unfiltered alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF301ONT, ENCFF512LPA, ENCFF643CGH 6966499637 ENCODE Processing Pipeline 2b09de36b4e09a8cd4d2d0b4627a4d9c https://www.encodeproject.org/files/ENCFF593OVS/@@download/ENCFF593OVS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF539PZQ bam unfiltered alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF643CGH, ENCFF755SKN, ENCFF895EJG 6316500632 ENCODE Processing Pipeline ec92dc4d6bf2dd05f273ede8d31dafbc https://www.encodeproject.org/files/ENCFF539PZQ/@@download/ENCFF539PZQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF351QFX bam unfiltered alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF755SKN, ENCFF807MUK, ENCFF895EJG 6305537530 ENCODE Processing Pipeline de1c5947a78092d7579f8f4310e02392 https://www.encodeproject.org/files/ENCFF351QFX/@@download/ENCFF351QFX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF848QEN bam unfiltered alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF301ONT, ENCFF512LPA, ENCFF807MUK 6954656965 ENCODE Processing Pipeline 2b5e494a388afd46918244dbda08e5f3 https://www.encodeproject.org/files/ENCFF848QEN/@@download/ENCFF848QEN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF365IHN bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF755SKN, ENCFF807MUK, ENCFF895EJG 5271853893 ENCODE Processing Pipeline 45b9a4b76205259b49c1b5a60ffcc487 https://www.encodeproject.org/files/ENCFF365IHN/@@download/ENCFF365IHN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF373CMX bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF643CGH, ENCFF755SKN, ENCFF895EJG 5275561469 ENCODE Processing Pipeline f8ad521022a4e241b4cb5eb3bf2a503f https://www.encodeproject.org/files/ENCFF373CMX/@@download/ENCFF373CMX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF014YFY bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF301ONT, ENCFF512LPA, ENCFF807MUK 5761873193 ENCODE Processing Pipeline 6aea6c5a939e98f2689b1626e5757cc4 https://www.encodeproject.org/files/ENCFF014YFY/@@download/ENCFF014YFY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF504BRR bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF301ONT, ENCFF512LPA, ENCFF643CGH 5765749308 ENCODE Processing Pipeline 539b10f2f171b6cb51e92b0ca62d434d https://www.encodeproject.org/files/ENCFF504BRR/@@download/ENCFF504BRR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF214BEJ bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF014YFY, ENCFF182WHU 1692594568 ENCODE Processing Pipeline 68d20d006842f71db5169ace3322dedc https://www.encodeproject.org/files/ENCFF214BEJ/@@download/ENCFF214BEJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF378IQO bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF014YFY, ENCFF182WHU, ENCFF365IHN 1942088725 ENCODE Processing Pipeline 98a877b82f57777c1afc901d4a1fc701 https://www.encodeproject.org/files/ENCFF378IQO/@@download/ENCFF378IQO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF170ITD bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF365IHN 1547393660 ENCODE Processing Pipeline 62cc20b3d9e12d4fb6dcf5338f76f06a https://www.encodeproject.org/files/ENCFF170ITD/@@download/ENCFF170ITD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF283QHZ bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF365IHN 1836900320 ENCODE Processing Pipeline aec10e54bbeb9e1c80658b026d981124 https://www.encodeproject.org/files/ENCFF283QHZ/@@download/ENCFF283QHZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF528CJM bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF014YFY, ENCFF182WHU 1909597579 ENCODE Processing Pipeline 4202f4b8dca93d5916351e7c3284284b https://www.encodeproject.org/files/ENCFF528CJM/@@download/ENCFF528CJM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF616MLP bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF365IHN 7179821 ENCODE Processing Pipeline ad4653018a3338cafe37dcea16537b30 https://www.encodeproject.org/files/ENCFF616MLP/@@download/ENCFF616MLP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF672QLR bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF014YFY, ENCFF182WHU, ENCFF365IHN 2529850901 ENCODE Processing Pipeline 70b4b63fa14a57df47bc442d5b553e66 https://www.encodeproject.org/files/ENCFF672QLR/@@download/ENCFF672QLR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF190DZM bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF014YFY, ENCFF182WHU 7208367 ENCODE Processing Pipeline ad68b0dd2aa7a2067cbc04a10bdfec05 https://www.encodeproject.org/files/ENCFF190DZM/@@download/ENCFF190DZM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF534AOP bigBed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF171XYZ 13199764 ENCODE Processing Pipeline e4e58041f3288685cecfa578b0b4f1a0 https://www.encodeproject.org/files/ENCFF534AOP/@@download/ENCFF534AOP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF955GOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF298TDL 715394 ENCODE Processing Pipeline 09586941ac8ccdeb1d857755fffd6fed https://www.encodeproject.org/files/ENCFF955GOQ/@@download/ENCFF955GOQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF471OLF bigBed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF616MLP 13262924 ENCODE Processing Pipeline a25417bb1f97d08d4bfae9e939639eec https://www.encodeproject.org/files/ENCFF471OLF/@@download/ENCFF471OLF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF285BTR bigBed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF190DZM 13247544 ENCODE Processing Pipeline 8835e62ba3f133692e08a742b560fa8f https://www.encodeproject.org/files/ENCFF285BTR/@@download/ENCFF285BTR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF424IPH bigBed narrowPeak conservative idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF755ATW 630864 ENCODE Processing Pipeline bdd2db4a4cfbf0dbeca383fc6de4d39f https://www.encodeproject.org/files/ENCFF424IPH/@@download/ENCFF424IPH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF171XYZ bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF014YFY, ENCFF182WHU, ENCFF365IHN 7342576 ENCODE Processing Pipeline c741915e8d4e25e0f3579e0c6f92371c https://www.encodeproject.org/files/ENCFF171XYZ/@@download/ENCFF171XYZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF755ATW bed narrowPeak conservative idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF171XYZ, ENCFF190DZM, ENCFF616MLP 312586 ENCODE Processing Pipeline aa1afab2db1bb680c69e78ae908bcb06 https://www.encodeproject.org/files/ENCFF755ATW/@@download/ENCFF755ATW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF298TDL bed narrowPeak optimal idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF171XYZ, ENCFF190DZM, ENCFF616MLP 362816 ENCODE Processing Pipeline d25445c73e6bac1da453265e2c164029 https://www.encodeproject.org/files/ENCFF298TDL/@@download/ENCFF298TDL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF147FFB bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF504BRR 1637133381 ENCODE Processing Pipeline 34c0cd0ab7aa3289465fe5cf5e3607c0 https://www.encodeproject.org/files/ENCFF147FFB/@@download/ENCFF147FFB.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF775ZMX bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF373CMX 1620315450 ENCODE Processing Pipeline aa0af1a2bfa99a74f74003d2807d7997 https://www.encodeproject.org/files/ENCFF775ZMX/@@download/ENCFF775ZMX.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF490YLR bigWig signal p-value ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF373CMX, ENCFF504BRR, ENCFF810LLR 1906615795 ENCODE Processing Pipeline e61c4f615f9b8aff293f27b79560b659 https://www.encodeproject.org/files/ENCFF490YLR/@@download/ENCFF490YLR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF870YOU bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF373CMX 1810230134 ENCODE Processing Pipeline eb60696be7b89aa5c2f435407adc7288 https://www.encodeproject.org/files/ENCFF870YOU/@@download/ENCFF870YOU.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF270BEK bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF504BRR 1890761962 ENCODE Processing Pipeline bade2e247b59e1f3ac30a6b22a488126 https://www.encodeproject.org/files/ENCFF270BEK/@@download/ENCFF270BEK.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF686VCT bigWig fold change over control ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF373CMX, ENCFF504BRR, ENCFF810LLR 2491147470 ENCODE Processing Pipeline fff1dbe3e53781934511c81ffbee0234 https://www.encodeproject.org/files/ENCFF686VCT/@@download/ENCFF686VCT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF447IPP bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF504BRR, ENCFF810LLR 7187525 ENCODE Processing Pipeline bf29d79bd78a66affcf0db4fe9344609 https://www.encodeproject.org/files/ENCFF447IPP/@@download/ENCFF447IPP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF025FYS bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF373CMX, ENCFF810LLR 7146934 ENCODE Processing Pipeline 0d3e92249fa4196402002e3c4c890ce8 https://www.encodeproject.org/files/ENCFF025FYS/@@download/ENCFF025FYS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF583CTO bigBed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF025FYS 13276247 ENCODE Processing Pipeline 8c33f7686a8687940b3f13094c606fe6 https://www.encodeproject.org/files/ENCFF583CTO/@@download/ENCFF583CTO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF704HKG bigBed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF222EZM 13210432 ENCODE Processing Pipeline aefd10c263194037412ac634d7d59815 https://www.encodeproject.org/files/ENCFF704HKG/@@download/ENCFF704HKG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF704SUZ bed narrowPeak conservative idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF025FYS, ENCFF222EZM, ENCFF419RSJ, ENCFF447IPP 314880 ENCODE Processing Pipeline 2bef4fe6e3fa21b6bb8d880621c64ea9 https://www.encodeproject.org/files/ENCFF704SUZ/@@download/ENCFF704SUZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF759PZW bigBed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF447IPP 13260925 ENCODE Processing Pipeline ac8de05125e66bb379c8bba9aa5987ce https://www.encodeproject.org/files/ENCFF759PZW/@@download/ENCFF759PZW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF222EZM bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF373CMX, ENCFF504BRR, ENCFF810LLR 7344902 ENCODE Processing Pipeline e5a74166af1216e9e863098fe4aa8c2b https://www.encodeproject.org/files/ENCFF222EZM/@@download/ENCFF222EZM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF977JVH bigBed narrowPeak optimal idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF668BSL 721282 ENCODE Processing Pipeline ade0fca3ecf7ca3c773579dc4ebbfc94 https://www.encodeproject.org/files/ENCFF977JVH/@@download/ENCFF977JVH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF023WNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF704SUZ 635318 ENCODE Processing Pipeline 640627e41c138e1820a434b23947a6c0 https://www.encodeproject.org/files/ENCFF023WNQ/@@download/ENCFF023WNQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF668BSL bed narrowPeak optimal idr thresholded peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF025FYS, ENCFF222EZM, ENCFF419RSJ, ENCFF447IPP 366016 ENCODE Processing Pipeline 15ec1beca6009f35d34f76d59400bd8d https://www.encodeproject.org/files/ENCFF668BSL/@@download/ENCFF668BSL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF381ZCL bam unfiltered alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EED, ENCFF807MUK 891705261 ENCODE Processing Pipeline c3671eedf9beeb80845580136f21a169 https://www.encodeproject.org/files/ENCFF381ZCL/@@download/ENCFF381ZCL.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF330CDN bam unfiltered alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDZ, ENCFF807MUK 1056177597 ENCODE Processing Pipeline 4bf772b1f67a320e73e3cdd74b161b0f https://www.encodeproject.org/files/ENCFF330CDN/@@download/ENCFF330CDN.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF873QIA bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264RGM, ENCFF817NEK, ENCFF863VMN, ENCFF969RVW 969495576 ENCODE Processing Pipeline 1a27f56dbe0b9f05d00444bc62d3f8db https://www.encodeproject.org/files/ENCFF873QIA/@@download/ENCFF873QIA.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF793DXA bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF264RGM, ENCFF863VMN 3951414 ENCODE Processing Pipeline 948b2edbfdd80d7b3c2709d653894ce6 https://www.encodeproject.org/files/ENCFF793DXA/@@download/ENCFF793DXA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF395LZM bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264RGM, ENCFF817NEK, ENCFF863VMN, ENCFF969RVW 928163521 ENCODE Processing Pipeline 6d99a9d820552dbc1eac7473aeb8c693 https://www.encodeproject.org/files/ENCFF395LZM/@@download/ENCFF395LZM.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF666HXY bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264RGM, ENCFF817NEK, ENCFF863VMN, ENCFF969RVW 5207439 ENCODE Processing Pipeline 5a79003bfb8903cd2096c358893a69ef https://www.encodeproject.org/files/ENCFF666HXY/@@download/ENCFF666HXY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF747RWF bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF969RVW 4261011 ENCODE Processing Pipeline fdbc4961344222b0867324f70265bb24 https://www.encodeproject.org/files/ENCFF747RWF/@@download/ENCFF747RWF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF913DIG bed narrowPeak conservative idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF666HXY, ENCFF747RWF, ENCFF793DXA 32223 ENCODE Processing Pipeline 6308062840e17ec417cbf025a865b226 https://www.encodeproject.org/files/ENCFF913DIG/@@download/ENCFF913DIG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF986NAV bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF793DXA 10561238 ENCODE Processing Pipeline 0ee170f5feacb06392a994a5e0aff3d8 https://www.encodeproject.org/files/ENCFF986NAV/@@download/ENCFF986NAV.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF432JTB bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF747RWF 10689880 ENCODE Processing Pipeline 2f1589623d6810bc4cc39ee139688b00 https://www.encodeproject.org/files/ENCFF432JTB/@@download/ENCFF432JTB.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF581YKU bigBed narrowPeak conservative idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF913DIG 106627 ENCODE Processing Pipeline 61feb5745afbb1e88df0090e414b872f https://www.encodeproject.org/files/ENCFF581YKU/@@download/ENCFF581YKU.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF405GHU bed narrowPeak optimal idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF666HXY, ENCFF747RWF, ENCFF793DXA 43432 ENCODE Processing Pipeline 447e24df226cb5aa1288dd5643f4af58 https://www.encodeproject.org/files/ENCFF405GHU/@@download/ENCFF405GHU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF554IOB bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF666HXY 11408724 ENCODE Processing Pipeline b58ad8eae49d61da1924ab9ee2313bb2 https://www.encodeproject.org/files/ENCFF554IOB/@@download/ENCFF554IOB.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF560OCL bigBed narrowPeak optimal idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF405GHU 121233 ENCODE Processing Pipeline 72269430cfca2e49037bf6962618fb7d https://www.encodeproject.org/files/ENCFF560OCL/@@download/ENCFF560OCL.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF002EDZ fastq reads ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 734052743 Michael Snyder, Stanford 1727aa409b60c11de35a825513eb63c0 SRA:SRR5111864 https://www.encodeproject.org/files/ENCFF002EDZ/@@download/ENCFF002EDZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, borderline replicate concordance, low read depth ENCFF002EED fastq reads ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 610557876 Michael Snyder, Stanford 8b0f8a3fe87596323adb64454fde8091 SRA:SRR5111865 https://www.encodeproject.org/files/ENCFF002EED/@@download/ENCFF002EED.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, borderline replicate concordance, low read depth ENCFF264RGM bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDZ, ENCFF807MUK 731670015 ENCODE Processing Pipeline 993d648e7352d0140baadf0e7743cecc https://www.encodeproject.org/files/ENCFF264RGM/@@download/ENCFF264RGM.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF969RVW bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EED, ENCFF807MUK 620226574 ENCODE Processing Pipeline dbe2309e779cf959f45d22e0d74e2e7c https://www.encodeproject.org/files/ENCFF969RVW/@@download/ENCFF969RVW.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF562VCT bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF264RGM, ENCFF863VMN 463818013 ENCODE Processing Pipeline 1d213b876692a1a3f2b8292be0e0d87a https://www.encodeproject.org/files/ENCFF562VCT/@@download/ENCFF562VCT.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF812GTC bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF969RVW 452595903 ENCODE Processing Pipeline 56a4b14d300b531c4bd9cf97f47b9b6c https://www.encodeproject.org/files/ENCFF812GTC/@@download/ENCFF812GTC.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF904AEE bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264RGM, ENCFF817NEK, ENCFF863VMN, ENCFF969RVW 972153437 ENCODE Processing Pipeline 58184e5a78be4f98501c8976091d7a3d https://www.encodeproject.org/files/ENCFF904AEE/@@download/ENCFF904AEE.bigWig hg19 archived low read length, borderline replicate concordance, low read depth ENCFF623NUW bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF264RGM, ENCFF863VMN 428560780 ENCODE Processing Pipeline e948bf1ed6d57304f60437a699a1d407 https://www.encodeproject.org/files/ENCFF623NUW/@@download/ENCFF623NUW.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF649XHH bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF969RVW 373932967 ENCODE Processing Pipeline 17e775b8a3fa790bee36eb3b8a49d46f https://www.encodeproject.org/files/ENCFF649XHH/@@download/ENCFF649XHH.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF306HMD bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264RGM, ENCFF817NEK, ENCFF863VMN, ENCFF969RVW 923498144 ENCODE Processing Pipeline 84f2f6d3f88b52dfff3b7f123c476981 https://www.encodeproject.org/files/ENCFF306HMD/@@download/ENCFF306HMD.bigWig hg19 archived low read length, borderline replicate concordance, low read depth ENCFF460NDF bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF969RVW 4492414 ENCODE Processing Pipeline 26c8a50a84149bebdc506ed856cefa4e https://www.encodeproject.org/files/ENCFF460NDF/@@download/ENCFF460NDF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF880ZWB bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF264RGM, ENCFF863VMN 4096610 ENCODE Processing Pipeline b8760cfa57d2e17ff9c368c63c07f04b https://www.encodeproject.org/files/ENCFF880ZWB/@@download/ENCFF880ZWB.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF571CDI bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264RGM, ENCFF817NEK, ENCFF863VMN, ENCFF969RVW 5486435 ENCODE Processing Pipeline f6290994413f93387151b2ac7abfd57d https://www.encodeproject.org/files/ENCFF571CDI/@@download/ENCFF571CDI.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF104GZF bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF880ZWB 10859310 ENCODE Processing Pipeline 27310bb0cba535afdaba7b49ba7b1411 https://www.encodeproject.org/files/ENCFF104GZF/@@download/ENCFF104GZF.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF924FPI bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF571CDI 11489054 ENCODE Processing Pipeline c4c57cce5db7534634c95fa00a408918 https://www.encodeproject.org/files/ENCFF924FPI/@@download/ENCFF924FPI.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF242IZX bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF460NDF 10911176 ENCODE Processing Pipeline 6848455c266bc568cea80765f81444a9 https://www.encodeproject.org/files/ENCFF242IZX/@@download/ENCFF242IZX.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF665ZGD bam unfiltered alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EED, ENCFF643CGH 896196537 ENCODE Processing Pipeline 0200eb67fd45d9fa6f9d495fcccc1984 https://www.encodeproject.org/files/ENCFF665ZGD/@@download/ENCFF665ZGD.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF238OKX bam unfiltered alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDZ, ENCFF643CGH 1061562209 ENCODE Processing Pipeline db409dde4b87f02231241c3b040413d0 https://www.encodeproject.org/files/ENCFF238OKX/@@download/ENCFF238OKX.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF322GHA bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EED, ENCFF643CGH 619948519 ENCODE Processing Pipeline 874180c7bcb64903d8e120990ab3c05c https://www.encodeproject.org/files/ENCFF322GHA/@@download/ENCFF322GHA.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF880EMH bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDZ, ENCFF643CGH 731343427 ENCODE Processing Pipeline 449b4037f69e99e199c3c4ac4b5d52a7 https://www.encodeproject.org/files/ENCFF880EMH/@@download/ENCFF880EMH.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF180SZO bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF880EMH 523580510 ENCODE Processing Pipeline d4e17c07f56ea0e04e78420eeb675e13 https://www.encodeproject.org/files/ENCFF180SZO/@@download/ENCFF180SZO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF803MQL bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF322GHA, ENCFF536CTV 455043461 ENCODE Processing Pipeline 23257a3262cb0fd1d1b370e579708d09 https://www.encodeproject.org/files/ENCFF803MQL/@@download/ENCFF803MQL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF186BYK bigWig signal p-value ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF322GHA, ENCFF511RLN, ENCFF536CTV, ENCFF880EMH 1014795334 ENCODE Processing Pipeline e6c7bb5d9e206275e59e7e8c05a22763 https://www.encodeproject.org/files/ENCFF186BYK/@@download/ENCFF186BYK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF013NCE bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF880EMH 431322339 ENCODE Processing Pipeline 37bc6a8337ae47c297262360135619e5 https://www.encodeproject.org/files/ENCFF013NCE/@@download/ENCFF013NCE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF933BXI bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF322GHA, ENCFF536CTV 374791140 ENCODE Processing Pipeline 81da079c12842438923ba12d3633d5ec https://www.encodeproject.org/files/ENCFF933BXI/@@download/ENCFF933BXI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF452XTX bigWig fold change over control ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF322GHA, ENCFF511RLN, ENCFF536CTV, ENCFF880EMH 919447590 ENCODE Processing Pipeline f4d8eb150bb499acf1e8094e1da180d1 https://www.encodeproject.org/files/ENCFF452XTX/@@download/ENCFF452XTX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF066IMW bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF880EMH 3947232 ENCODE Processing Pipeline 889926bcc215ca049df69c69b8290ea9 https://www.encodeproject.org/files/ENCFF066IMW/@@download/ENCFF066IMW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF510QON bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF066IMW 10576369 ENCODE Processing Pipeline f03624ad2f8538e8283cd2c425b0dba8 https://www.encodeproject.org/files/ENCFF510QON/@@download/ENCFF510QON.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF287MUS bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF431EYI 11410784 ENCODE Processing Pipeline ce64943395f223cdc83babd6e6d34129 https://www.encodeproject.org/files/ENCFF287MUS/@@download/ENCFF287MUS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF070ZBN bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF322GHA, ENCFF536CTV 4246551 ENCODE Processing Pipeline 58cbf28e24bc2199eb7c9658a89e7832 https://www.encodeproject.org/files/ENCFF070ZBN/@@download/ENCFF070ZBN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF431EYI bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF322GHA, ENCFF511RLN, ENCFF536CTV, ENCFF880EMH 5119913 ENCODE Processing Pipeline a2344fad065f1c8a4950844e8f236b21 https://www.encodeproject.org/files/ENCFF431EYI/@@download/ENCFF431EYI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF661KGW bigBed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF070ZBN 10709364 ENCODE Processing Pipeline 094a9cd6894f76fa736b9142bb8c5feb https://www.encodeproject.org/files/ENCFF661KGW/@@download/ENCFF661KGW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF599KIF bigBed narrowPeak conservative idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF549YFK 106340 ENCODE Processing Pipeline c0859d06dd65130a68800652af694bc6 https://www.encodeproject.org/files/ENCFF599KIF/@@download/ENCFF599KIF.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF549YFK bed narrowPeak conservative idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF066IMW, ENCFF070ZBN, ENCFF419RSJ, ENCFF431EYI 31923 ENCODE Processing Pipeline 1f9e45a368091fe53a063100592973a2 https://www.encodeproject.org/files/ENCFF549YFK/@@download/ENCFF549YFK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF091BEK bed narrowPeak optimal idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF066IMW, ENCFF070ZBN, ENCFF419RSJ, ENCFF431EYI 43985 ENCODE Processing Pipeline 8e26f7d5f6a9ff8f8d7b8d8de29191b2 https://www.encodeproject.org/files/ENCFF091BEK/@@download/ENCFF091BEK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF147UYY bigBed narrowPeak optimal idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF091BEK 121916 ENCODE Processing Pipeline a54cfb6987e9c4bafe8a5ba58e303e1e https://www.encodeproject.org/files/ENCFF147UYY/@@download/ENCFF147UYY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF159USJ bigBed narrowPeak conservative idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF025DVE 83861 ENCODE Processing Pipeline 0d1984f50d69289c3fd9194f9a2ab16b https://www.encodeproject.org/files/ENCFF159USJ/@@download/ENCFF159USJ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF025DVE bed narrowPeak conservative idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF460NDF, ENCFF571CDI, ENCFF880ZWB 29749 ENCODE Processing Pipeline e71f73cafbbefbb0bc0ebc0e5c04fbfc https://www.encodeproject.org/files/ENCFF025DVE/@@download/ENCFF025DVE.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF818PXA bigBed narrowPeak optimal idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF054OUB 116030 ENCODE Processing Pipeline 1dffc56f209a3a75cf621adb6cfaff70 https://www.encodeproject.org/files/ENCFF818PXA/@@download/ENCFF818PXA.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF054OUB bed narrowPeak optimal idr thresholded peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF460NDF, ENCFF571CDI, ENCFF880ZWB 39845 ENCODE Processing Pipeline 58a5a4b804a70f6c592d37cee238e479 https://www.encodeproject.org/files/ENCFF054OUB/@@download/ENCFF054OUB.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF828VUL fastq reads ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF685UUM 4170786120 Michael Snyder, Stanford c30f8e216c9a497469112e7fe163f6ba https://www.encodeproject.org/files/ENCFF828VUL/@@download/ENCFF828VUL.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF460ZWD fastq reads ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF301KVJ 2728891077 Michael Snyder, Stanford 85825146b28061678e80332b0da34453 https://www.encodeproject.org/files/ENCFF460ZWD/@@download/ENCFF460ZWD.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF685UUM fastq reads ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF828VUL 3690006967 Michael Snyder, Stanford a48adfbbf266179b534bcc0d8ceb6dd4 https://www.encodeproject.org/files/ENCFF685UUM/@@download/ENCFF685UUM.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF301KVJ fastq reads ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF460ZWD 2785669428 Michael Snyder, Stanford 0eb5c6a131e91b4a247ad394754b514d https://www.encodeproject.org/files/ENCFF301KVJ/@@download/ENCFF301KVJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF039XRH bam unfiltered alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF301KVJ, ENCFF460ZWD, ENCFF807MUK 5307802393 ENCODE Processing Pipeline 6ec730b16d6d42d887902ea300a8622e https://www.encodeproject.org/files/ENCFF039XRH/@@download/ENCFF039XRH.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF563EPX bam unfiltered alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF685UUM, ENCFF828VUL 7354331570 ENCODE Processing Pipeline 0fd804999d0081eada1343de5eb72466 https://www.encodeproject.org/files/ENCFF563EPX/@@download/ENCFF563EPX.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF594CSF bam unfiltered alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF301KVJ, ENCFF460ZWD, ENCFF643CGH 5310691463 ENCODE Processing Pipeline a616022c9183c2ad0e1a1a8ed3005f49 https://www.encodeproject.org/files/ENCFF594CSF/@@download/ENCFF594CSF.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF458QFF bam unfiltered alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF685UUM, ENCFF807MUK, ENCFF828VUL 7349080939 ENCODE Processing Pipeline 16c6e5a34ff5172c2b82e32c67515133 https://www.encodeproject.org/files/ENCFF458QFF/@@download/ENCFF458QFF.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF332BKR bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF301KVJ, ENCFF460ZWD, ENCFF807MUK 3436153770 ENCODE Processing Pipeline 3e25a796656f49149a84a6f96ccd6806 https://www.encodeproject.org/files/ENCFF332BKR/@@download/ENCFF332BKR.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF822ADN bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF301KVJ, ENCFF460ZWD, ENCFF643CGH 3438580804 ENCODE Processing Pipeline 9c99666a88586a7aa36d6097af0b4352 https://www.encodeproject.org/files/ENCFF822ADN/@@download/ENCFF822ADN.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF790KLE bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF685UUM, ENCFF828VUL 5001589684 ENCODE Processing Pipeline 131ad19bd86dc73b0c596884152f7ef9 https://www.encodeproject.org/files/ENCFF790KLE/@@download/ENCFF790KLE.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF306NYS bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF685UUM, ENCFF807MUK, ENCFF828VUL 4997391492 ENCODE Processing Pipeline 3ac970829465a08bc3dcf2003b83279c https://www.encodeproject.org/files/ENCFF306NYS/@@download/ENCFF306NYS.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF604SKG bigWig signal p-value ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF332BKR 991360775 ENCODE Processing Pipeline 4fd75aa51d012445e6bdb94971b8d816 https://www.encodeproject.org/files/ENCFF604SKG/@@download/ENCFF604SKG.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF797AJN bigWig signal p-value ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF306NYS, ENCFF834TUP 1945747487 ENCODE Processing Pipeline 166c76f1cf2e219d744348e615847116 https://www.encodeproject.org/files/ENCFF797AJN/@@download/ENCFF797AJN.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF244ECN bigWig signal p-value ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF306NYS, ENCFF332BKR, ENCFF834TUP 1972740058 ENCODE Processing Pipeline 59ab2eba5055838b71d21685a7eb73a0 https://www.encodeproject.org/files/ENCFF244ECN/@@download/ENCFF244ECN.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF056MKY bigWig fold change over control ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF332BKR 1219801871 ENCODE Processing Pipeline 4b4c882c5e6eb47fb25910e1dd7ce3a2 https://www.encodeproject.org/files/ENCFF056MKY/@@download/ENCFF056MKY.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF404PAG bigWig fold change over control ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF306NYS, ENCFF834TUP 1972858728 ENCODE Processing Pipeline 0e3564035edd04bdc7a4672718348193 https://www.encodeproject.org/files/ENCFF404PAG/@@download/ENCFF404PAG.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF259JBX bigWig fold change over control ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF306NYS, ENCFF332BKR, ENCFF834TUP 2363794254 ENCODE Processing Pipeline 0f7a19971ce4277271490c9faf7929c3 https://www.encodeproject.org/files/ENCFF259JBX/@@download/ENCFF259JBX.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF040DDO bigBed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF179GKP 8720456 ENCODE Processing Pipeline b044945aa8276e88ee8d9f3ea3460b8a https://www.encodeproject.org/files/ENCFF040DDO/@@download/ENCFF040DDO.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF531NQP bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF306NYS, ENCFF834TUP 5971548 ENCODE Processing Pipeline 8e9c11a2ca840a085432e43460da5b42 https://www.encodeproject.org/files/ENCFF531NQP/@@download/ENCFF531NQP.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF562QRM bigBed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF464TJB 8799519 ENCODE Processing Pipeline 9d862adcdb639a8a03076be19b057024 https://www.encodeproject.org/files/ENCFF562QRM/@@download/ENCFF562QRM.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF987VYV bigBed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF531NQP 9639435 ENCODE Processing Pipeline d1d531d42e8074cdbcd27707fcb56838 https://www.encodeproject.org/files/ENCFF987VYV/@@download/ENCFF987VYV.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF146NUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF729WOD 69629 ENCODE Processing Pipeline 265837f498ecdfff9f1652d2d0d26fe3 https://www.encodeproject.org/files/ENCFF146NUZ/@@download/ENCFF146NUZ.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF954NAJ bed narrowPeak optimal idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF179GKP, ENCFF464TJB, ENCFF531NQP 7023 ENCODE Processing Pipeline bdc0541201594ebca82f7ad5c31c2cdc https://www.encodeproject.org/files/ENCFF954NAJ/@@download/ENCFF954NAJ.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF464TJB bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF332BKR 4994184 ENCODE Processing Pipeline 9aa45d482c71c8760087f0b0d9a92608 https://www.encodeproject.org/files/ENCFF464TJB/@@download/ENCFF464TJB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF179GKP bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF306NYS, ENCFF332BKR, ENCFF834TUP 5541417 ENCODE Processing Pipeline 3040756355eed6d7cb0ef786f7059b79 https://www.encodeproject.org/files/ENCFF179GKP/@@download/ENCFF179GKP.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF824TGC bed narrowPeak conservative idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF179GKP, ENCFF464TJB, ENCFF531NQP 3429 ENCODE Processing Pipeline 0854a647f788aa4a872d8333e25615ab https://www.encodeproject.org/files/ENCFF824TGC/@@download/ENCFF824TGC.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF788ODW bigBed narrowPeak optimal idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF170IJD 70458 ENCODE Processing Pipeline 8da9314e7aa75d134546fa24994f6211 https://www.encodeproject.org/files/ENCFF788ODW/@@download/ENCFF788ODW.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF767TOY bigWig signal p-value ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF790TAN, ENCFF822ADN 1176720654 ENCODE Processing Pipeline 8b6d35e4c8d08268fd7c526948dc2c80 https://www.encodeproject.org/files/ENCFF767TOY/@@download/ENCFF767TOY.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF481LEW bigWig signal p-value ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF790KLE, ENCFF790TAN 1750078696 ENCODE Processing Pipeline 9173b14d974a94e54ecefd5c5b991ff0 https://www.encodeproject.org/files/ENCFF481LEW/@@download/ENCFF481LEW.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF582KRW bigWig fold change over control ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF790TAN, ENCFF822ADN 1216906846 ENCODE Processing Pipeline 349190178b027a594f6efd49ba609c0a https://www.encodeproject.org/files/ENCFF582KRW/@@download/ENCFF582KRW.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF234NNZ bigWig signal p-value ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF712WXB, ENCFF790KLE, ENCFF790TAN, ENCFF822ADN 2118919641 ENCODE Processing Pipeline 77d4c43b903eb5a5d7ce8ffb95bc2d59 https://www.encodeproject.org/files/ENCFF234NNZ/@@download/ENCFF234NNZ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF763NZJ bigWig fold change over control ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF790KLE, ENCFF790TAN 1981462371 ENCODE Processing Pipeline f1515bffe47e9ece3495549534876bc5 https://www.encodeproject.org/files/ENCFF763NZJ/@@download/ENCFF763NZJ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF661MCI bigWig fold change over control ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF712WXB, ENCFF790KLE, ENCFF790TAN, ENCFF822ADN 2367636495 ENCODE Processing Pipeline 6724246159ff3f74eecd83f6813d0f9b https://www.encodeproject.org/files/ENCFF661MCI/@@download/ENCFF661MCI.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF131FBO bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF712WXB, ENCFF790KLE, ENCFF790TAN, ENCFF822ADN 7182722 ENCODE Processing Pipeline f9b518c92cd33fd8dea0b1451d5085ee https://www.encodeproject.org/files/ENCFF131FBO/@@download/ENCFF131FBO.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF043LXN bigBed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF131FBO 10878717 ENCODE Processing Pipeline b76bf6ecdfa0faa4635d48ca92255938 https://www.encodeproject.org/files/ENCFF043LXN/@@download/ENCFF043LXN.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF104CDG bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF790TAN, ENCFF822ADN 6285365 ENCODE Processing Pipeline 6a95b7ab135d4da4c0ed0916f9251804 https://www.encodeproject.org/files/ENCFF104CDG/@@download/ENCFF104CDG.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF647TNF bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF712WXB, ENCFF790KLE, ENCFF790TAN 6963208 ENCODE Processing Pipeline f8ecd1ebcd603ef761280ee153142ec1 https://www.encodeproject.org/files/ENCFF647TNF/@@download/ENCFF647TNF.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF113PCQ bigBed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF104CDG 11047753 ENCODE Processing Pipeline 9a26488ff871a7835bee08c75777ed8b https://www.encodeproject.org/files/ENCFF113PCQ/@@download/ENCFF113PCQ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF460EQX bed narrowPeak conservative idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104CDG, ENCFF131FBO, ENCFF419RSJ, ENCFF647TNF 3576 ENCODE Processing Pipeline f5508bb826e9301a09378a7b979aa551 https://www.encodeproject.org/files/ENCFF460EQX/@@download/ENCFF460EQX.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF305OOU bed narrowPeak optimal idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104CDG, ENCFF131FBO, ENCFF419RSJ, ENCFF647TNF 7864 ENCODE Processing Pipeline 30431117f6219609c90d541f738aee29 https://www.encodeproject.org/files/ENCFF305OOU/@@download/ENCFF305OOU.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF645KBB bigBed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF647TNF 10966340 ENCODE Processing Pipeline 3d4491180a4b67efdfd53bf9c2290c62 https://www.encodeproject.org/files/ENCFF645KBB/@@download/ENCFF645KBB.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF217BKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF460EQX 86492 ENCODE Processing Pipeline 0316b51c24b162ff4f32dcb8cac282c5 https://www.encodeproject.org/files/ENCFF217BKJ/@@download/ENCFF217BKJ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF566EUN bigBed narrowPeak optimal idr thresholded peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF305OOU 82358 ENCODE Processing Pipeline a62c696155b75ac791c52722f02b2975 https://www.encodeproject.org/files/ENCFF566EUN/@@download/ENCFF566EUN.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF774DUX bam unfiltered alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF643CGH, ENCFF657CSM 1677198320 ENCODE Processing Pipeline 36d5828de303033042625179acff2acb https://www.encodeproject.org/files/ENCFF774DUX/@@download/ENCFF774DUX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF208UQN bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF935HPE 800092323 ENCODE Processing Pipeline a3c1de3136127b73fa71694af7d9dd61 https://www.encodeproject.org/files/ENCFF208UQN/@@download/ENCFF208UQN.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF332EOH bam unfiltered alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF935HPE 1161422135 ENCODE Processing Pipeline 2a284f9404909ffddcd5b6767d6d9a73 https://www.encodeproject.org/files/ENCFF332EOH/@@download/ENCFF332EOH.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF493GFN bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF643CGH, ENCFF657CSM 1036948810 ENCODE Processing Pipeline ae9400d86c3bf0dd79c44339ee207e73 https://www.encodeproject.org/files/ENCFF493GFN/@@download/ENCFF493GFN.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF140UXF bigWig signal p-value ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF493GFN, ENCFF645CCA, ENCFF943MYJ 1180425306 ENCODE Processing Pipeline 38ecab5cb5c387873d184d1d05437a5e https://www.encodeproject.org/files/ENCFF140UXF/@@download/ENCFF140UXF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF246IJB bigWig fold change over control ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF493GFN, ENCFF645CCA, ENCFF943MYJ 1079862809 ENCODE Processing Pipeline d6a6ef89cca369ee232c9906837f2563 https://www.encodeproject.org/files/ENCFF246IJB/@@download/ENCFF246IJB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF608JPQ bigWig signal p-value ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF208UQN, ENCFF493GFN, ENCFF645CCA, ENCFF943MYJ 1516228615 ENCODE Processing Pipeline 0967ee66b9b51b37c2c78988e1102659 https://www.encodeproject.org/files/ENCFF608JPQ/@@download/ENCFF608JPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF226SAU bigWig fold change over control ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF208UQN, ENCFF645CCA, ENCFF943MYJ 1044671697 ENCODE Processing Pipeline fff3ee384ee4118eade682c4c1f138f1 https://www.encodeproject.org/files/ENCFF226SAU/@@download/ENCFF226SAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF881CWL bigWig fold change over control ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF208UQN, ENCFF493GFN, ENCFF645CCA, ENCFF943MYJ 1500556994 ENCODE Processing Pipeline f46f78929347f88e82b6017afcaff514 https://www.encodeproject.org/files/ENCFF881CWL/@@download/ENCFF881CWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF247JJW bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF493GFN, ENCFF645CCA, ENCFF943MYJ 7250887 ENCODE Processing Pipeline ffeb904c0cd3b0b156405a91be24341c https://www.encodeproject.org/files/ENCFF247JJW/@@download/ENCFF247JJW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF807NDU bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF208UQN, ENCFF645CCA, ENCFF943MYJ 6971332 ENCODE Processing Pipeline de80e9da48e26ab17d144ace9971a298 https://www.encodeproject.org/files/ENCFF807NDU/@@download/ENCFF807NDU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF503ZYY bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF208UQN, ENCFF493GFN, ENCFF645CCA, ENCFF943MYJ 7307832 ENCODE Processing Pipeline 067eeeb3b89ae5a8ba66e4234d7e2ea8 https://www.encodeproject.org/files/ENCFF503ZYY/@@download/ENCFF503ZYY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF525YAD bigWig signal p-value ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF208UQN, ENCFF645CCA, ENCFF943MYJ 1159582320 ENCODE Processing Pipeline 6c0a0b32773647f100e9b41938c09aa5 https://www.encodeproject.org/files/ENCFF525YAD/@@download/ENCFF525YAD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF846OPE bigBed narrowPeak conservative idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF029RXI 436919 ENCODE Processing Pipeline 665a1814853a2451c84428da8a7ac412 https://www.encodeproject.org/files/ENCFF846OPE/@@download/ENCFF846OPE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF148ABR bed narrowPeak optimal idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF247JJW, ENCFF419RSJ, ENCFF503ZYY, ENCFF807NDU 272777 ENCODE Processing Pipeline 05d330994f4e0d15c2291612f10abe6a https://www.encodeproject.org/files/ENCFF148ABR/@@download/ENCFF148ABR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF811RVS bigBed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF247JJW 12257021 ENCODE Processing Pipeline ea0d80e64b8653d2ed6fb69e86862c62 https://www.encodeproject.org/files/ENCFF811RVS/@@download/ENCFF811RVS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF729NLV bigBed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF807NDU 12952389 ENCODE Processing Pipeline 2c9b5f2bc96f1b5d95c67b583a4c8030 https://www.encodeproject.org/files/ENCFF729NLV/@@download/ENCFF729NLV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF435QHH bigBed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF503ZYY 12289474 ENCODE Processing Pipeline bb92bde063446dae613fecef328e6f34 https://www.encodeproject.org/files/ENCFF435QHH/@@download/ENCFF435QHH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF029RXI bed narrowPeak conservative idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF247JJW, ENCFF419RSJ, ENCFF503ZYY, ENCFF807NDU 159336 ENCODE Processing Pipeline 8e7ab93c17c295ca9eeb1393d3939fe5 https://www.encodeproject.org/files/ENCFF029RXI/@@download/ENCFF029RXI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF352SAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF148ABR 649848 ENCODE Processing Pipeline 136ceaba591a4d1921658386808fe16e https://www.encodeproject.org/files/ENCFF352SAQ/@@download/ENCFF352SAQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF935HPE fastq reads ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 1 36 paired-ended 1 ENCFF686IIE 775520043 Bradley Bernstein, Broad 36fc52e720080099f84798f44bdfb756 https://www.encodeproject.org/files/ENCFF935HPE/@@download/ENCFF935HPE.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF686KAY fastq reads ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 1 25 paired-ended 2 ENCFF657CSM 931518523 Bradley Bernstein, Broad a904becf13d14c7ae43372b602e86f46 https://www.encodeproject.org/files/ENCFF686KAY/@@download/ENCFF686KAY.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO missing controlled_by ENCFF657CSM fastq reads ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 1 36 paired-ended 1 ENCFF686KAY 1191068550 Bradley Bernstein, Broad 920c1c36ad9292d3fe65c5c1ea559d95 https://www.encodeproject.org/files/ENCFF657CSM/@@download/ENCFF657CSM.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF686IIE fastq reads ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 1 25 paired-ended 2 ENCFF935HPE 602201615 Bradley Bernstein, Broad 4f78597de1230fc3d8a46985dc43afdc https://www.encodeproject.org/files/ENCFF686IIE/@@download/ENCFF686IIE.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO missing controlled_by ENCFF502KDF bam unfiltered alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF807MUK, ENCFF935HPE 1154715719 ENCODE Processing Pipeline 2947a7377ec884cb8c887bdc6b786535 https://www.encodeproject.org/files/ENCFF502KDF/@@download/ENCFF502KDF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF626AZY bam unfiltered alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF657CSM, ENCFF807MUK 1668166830 ENCODE Processing Pipeline 8cdd4e7e6483a2c9bbaab3343243a747 https://www.encodeproject.org/files/ENCFF626AZY/@@download/ENCFF626AZY.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF048WFD bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF807MUK, ENCFF935HPE 800386709 ENCODE Processing Pipeline 681ff20cbb967d29de415e482fcebf3e https://www.encodeproject.org/files/ENCFF048WFD/@@download/ENCFF048WFD.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF275KSQ bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF657CSM, ENCFF807MUK 1037300496 ENCODE Processing Pipeline 6ba6e416cff1c25ceb8262435e19e6fd https://www.encodeproject.org/files/ENCFF275KSQ/@@download/ENCFF275KSQ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF693ZIR bigWig signal p-value ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF048WFD, ENCFF165PBN, ENCFF705NOL 1142388399 ENCODE Processing Pipeline 597241fe019ad0bc7c57a129a381496e https://www.encodeproject.org/files/ENCFF693ZIR/@@download/ENCFF693ZIR.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF460MNB bigWig fold change over control ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 1111591954 ENCODE Processing Pipeline 463debad5b3d39eb880b27311f279eba https://www.encodeproject.org/files/ENCFF460MNB/@@download/ENCFF460MNB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF844GGG bigWig signal p-value ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 1134707409 ENCODE Processing Pipeline a90212ec9738ea46fbd2fd94f91364e7 https://www.encodeproject.org/files/ENCFF844GGG/@@download/ENCFF844GGG.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF819ZAX bigWig fold change over control ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF048WFD, ENCFF165PBN, ENCFF705NOL 1052670034 ENCODE Processing Pipeline 05c84d3d1ea059f7e60619c20fc245a5 https://www.encodeproject.org/files/ENCFF819ZAX/@@download/ENCFF819ZAX.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF723TIO bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 7252453 ENCODE Processing Pipeline a73318bcccb17d28b68193eee7dbf8f6 https://www.encodeproject.org/files/ENCFF723TIO/@@download/ENCFF723TIO.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF662MTH bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF048WFD, ENCFF165PBN, ENCFF705NOL 6983973 ENCODE Processing Pipeline 3c1f6e7d695c646be568dce7191b5d5c https://www.encodeproject.org/files/ENCFF662MTH/@@download/ENCFF662MTH.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF536FJD bigWig signal p-value ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF048WFD, ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 1235198316 ENCODE Processing Pipeline f1cdaa7e92acd03389b6485ea949fb26 https://www.encodeproject.org/files/ENCFF536FJD/@@download/ENCFF536FJD.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF191VPF bigWig fold change over control ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF048WFD, ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 1494354708 ENCODE Processing Pipeline 48d0ed68c59c50b5ef29f36174a64e24 https://www.encodeproject.org/files/ENCFF191VPF/@@download/ENCFF191VPF.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF168UAL bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF048WFD, ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 7308116 ENCODE Processing Pipeline 3ada1fdbccefbfbef5bb426664ae9900 https://www.encodeproject.org/files/ENCFF168UAL/@@download/ENCFF168UAL.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF366ZGB bigBed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF723TIO 12256718 ENCODE Processing Pipeline 0d40142b4c9b44a2affc34bfe3b24f7a https://www.encodeproject.org/files/ENCFF366ZGB/@@download/ENCFF366ZGB.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF366IBL bigBed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF662MTH 12869996 ENCODE Processing Pipeline a265e39c632db2009f92071a6e48f346 https://www.encodeproject.org/files/ENCFF366IBL/@@download/ENCFF366IBL.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF957VSB bigBed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF168UAL 12279193 ENCODE Processing Pipeline 122eb635520e12c02b0188a8345cbf45 https://www.encodeproject.org/files/ENCFF957VSB/@@download/ENCFF957VSB.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF594XHB bigBed narrowPeak conservative idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF346PKZ 432951 ENCODE Processing Pipeline 7983b284e4aa83c9031a2e7bdfeef1fb https://www.encodeproject.org/files/ENCFF594XHB/@@download/ENCFF594XHB.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF346PKZ bed narrowPeak conservative idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF168UAL, ENCFF662MTH, ENCFF723TIO 158246 ENCODE Processing Pipeline 22a8226b3e201a2eb21db4811be5fb55 https://www.encodeproject.org/files/ENCFF346PKZ/@@download/ENCFF346PKZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF069RNV bed narrowPeak optimal idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF168UAL, ENCFF662MTH, ENCFF723TIO 272674 ENCODE Processing Pipeline d27c65d18b5a6c94ea4d020099692ea6 https://www.encodeproject.org/files/ENCFF069RNV/@@download/ENCFF069RNV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF022VTW bigBed narrowPeak optimal idr thresholded peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF069RNV 646181 ENCODE Processing Pipeline 81b2ea644dabbc056ec66b91cbfd8c16 https://www.encodeproject.org/files/ENCFF022VTW/@@download/ENCFF022VTW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF466VMF fastq reads ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF451TRG 2262839687 Michael Snyder, Stanford 554743c45f32fcb96570802af00d68bf SRA:SRR5111618 https://www.encodeproject.org/files/ENCFF466VMF/@@download/ENCFF466VMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF231MZY fastq reads ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF474UCX 2370150498 Michael Snyder, Stanford 594c518eb8ed6e67597b91d85dc61354 SRA:SRR5111619 https://www.encodeproject.org/files/ENCFF231MZY/@@download/ENCFF231MZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF474UCX fastq reads ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF231MZY 2385557725 Michael Snyder, Stanford 699c29e8280f60cfea01262ecb1cc858 SRA:SRR5111619 https://www.encodeproject.org/files/ENCFF474UCX/@@download/ENCFF474UCX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF451TRG fastq reads ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF466VMF 2275443359 Michael Snyder, Stanford abe7b9c3ee417019025aa9a99e8bc2c8 SRA:SRR5111618 https://www.encodeproject.org/files/ENCFF451TRG/@@download/ENCFF451TRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF842KNS bam unfiltered alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF231MZY, ENCFF474UCX, ENCFF807MUK 4571712535 ENCODE Processing Pipeline 4cd83deb220b718a7569ccbb1809936f https://www.encodeproject.org/files/ENCFF842KNS/@@download/ENCFF842KNS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF346GLT bam unfiltered alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF451TRG, ENCFF466VMF, ENCFF643CGH 4571592546 ENCODE Processing Pipeline c34e5cb414159426882a6049773fcfd9 https://www.encodeproject.org/files/ENCFF346GLT/@@download/ENCFF346GLT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF788WYF bam unfiltered alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF451TRG, ENCFF466VMF, ENCFF807MUK 4566646518 ENCODE Processing Pipeline 64b87d51625ef0f1b6bdf6ce52652385 https://www.encodeproject.org/files/ENCFF788WYF/@@download/ENCFF788WYF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF649PPN bam unfiltered alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF231MZY, ENCFF474UCX, ENCFF643CGH 4574249450 ENCODE Processing Pipeline 75f5207c1784d528c03e372c6b0d83d8 https://www.encodeproject.org/files/ENCFF649PPN/@@download/ENCFF649PPN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF924QCM bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF231MZY, ENCFF474UCX, ENCFF807MUK 3137706704 ENCODE Processing Pipeline 7160eaf831266475493bc13eadca1a07 https://www.encodeproject.org/files/ENCFF924QCM/@@download/ENCFF924QCM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF970AJY bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF451TRG, ENCFF466VMF, ENCFF807MUK 3769252695 ENCODE Processing Pipeline 2750a888ddb892de4d647af935c05c88 https://www.encodeproject.org/files/ENCFF970AJY/@@download/ENCFF970AJY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF142BBF bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF451TRG, ENCFF466VMF, ENCFF643CGH 3769926180 ENCODE Processing Pipeline 23758028e8974878f567596cb9ea486b https://www.encodeproject.org/files/ENCFF142BBF/@@download/ENCFF142BBF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF821UAT bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF231MZY, ENCFF474UCX, ENCFF643CGH 3138884182 ENCODE Processing Pipeline 72c1286bfd0ae7a591541934ac0c80e7 https://www.encodeproject.org/files/ENCFF821UAT/@@download/ENCFF821UAT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF083CFE bigWig signal p-value ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF924QCM 1117624435 ENCODE Processing Pipeline 8a4b1d9beb53b3a512ab1bf13d6ff765 https://www.encodeproject.org/files/ENCFF083CFE/@@download/ENCFF083CFE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF377NDM bigWig signal p-value ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF970AJY 1202634695 ENCODE Processing Pipeline 7385f84efb7ba8fc1d1639779ed50e20 https://www.encodeproject.org/files/ENCFF377NDM/@@download/ENCFF377NDM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF115PEZ bigWig signal p-value ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF924QCM, ENCFF970AJY 1698442240 ENCODE Processing Pipeline 78cbf7ac96ca80928dae7e3dbf4944fd https://www.encodeproject.org/files/ENCFF115PEZ/@@download/ENCFF115PEZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF671HBF bigWig fold change over control ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF924QCM 1124870920 ENCODE Processing Pipeline 3e5088d826993fd4430e3bc88fdc80d8 https://www.encodeproject.org/files/ENCFF671HBF/@@download/ENCFF671HBF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF793XDH bigWig fold change over control ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF970AJY 1268758358 ENCODE Processing Pipeline c3b98413e6fb7e61b17c405c8f04dee0 https://www.encodeproject.org/files/ENCFF793XDH/@@download/ENCFF793XDH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF309INR bigWig fold change over control ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF924QCM, ENCFF970AJY 1698725253 ENCODE Processing Pipeline 646d0ffce24ea689c59edf249cd34e49 https://www.encodeproject.org/files/ENCFF309INR/@@download/ENCFF309INR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF154HFX bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF924QCM 6582278 ENCODE Processing Pipeline 6282ac8d5e8da6d964ce5eca79f25d7e https://www.encodeproject.org/files/ENCFF154HFX/@@download/ENCFF154HFX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF775HMC bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF970AJY 6879166 ENCODE Processing Pipeline 185e0a6ff0f38ec89241fba44699e571 https://www.encodeproject.org/files/ENCFF775HMC/@@download/ENCFF775HMC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF319RSR bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF924QCM, ENCFF970AJY 7153813 ENCODE Processing Pipeline 472e4d871a932e388f5e0e2989586cb3 https://www.encodeproject.org/files/ENCFF319RSR/@@download/ENCFF319RSR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF400YUS bigBed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF154HFX 13473567 ENCODE Processing Pipeline 75a8a39e3838a539ef0e70384c1ca241 https://www.encodeproject.org/files/ENCFF400YUS/@@download/ENCFF400YUS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF851XNL bigBed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF319RSR 13266940 ENCODE Processing Pipeline 94159668572cc2368b8227b4755f0d88 https://www.encodeproject.org/files/ENCFF851XNL/@@download/ENCFF851XNL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF587PPU bigBed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF775HMC 13360809 ENCODE Processing Pipeline b554f8625676c9a923375011e6f0d0f2 https://www.encodeproject.org/files/ENCFF587PPU/@@download/ENCFF587PPU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF212STL bed narrowPeak conservative idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF154HFX, ENCFF319RSR, ENCFF775HMC 86030 ENCODE Processing Pipeline b7d20b72a6105029606baa9a8ce11576 https://www.encodeproject.org/files/ENCFF212STL/@@download/ENCFF212STL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF183PGU bigBed narrowPeak conservative idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF212STL 225294 ENCODE Processing Pipeline 683afcc4a6445abc630a25e6c7c2efaf https://www.encodeproject.org/files/ENCFF183PGU/@@download/ENCFF183PGU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF025ECP bed narrowPeak optimal idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF154HFX, ENCFF319RSR, ENCFF775HMC 221339 ENCODE Processing Pipeline 03c499e812e34aacbe36679a280a9662 https://www.encodeproject.org/files/ENCFF025ECP/@@download/ENCFF025ECP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF540BLK bigBed narrowPeak optimal idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF025ECP 439130 ENCODE Processing Pipeline 4ff045ef1236cfa66d3d47d63502881d https://www.encodeproject.org/files/ENCFF540BLK/@@download/ENCFF540BLK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF076SJM bigWig signal p-value ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF821UAT 1062787569 ENCODE Processing Pipeline fa539b6188111650f40f91ab071c65b2 https://www.encodeproject.org/files/ENCFF076SJM/@@download/ENCFF076SJM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF904OVT bigWig signal p-value ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF142BBF 1234313897 ENCODE Processing Pipeline 4404be802ab2c94dd130db2f78a6a345 https://www.encodeproject.org/files/ENCFF904OVT/@@download/ENCFF904OVT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF288IBW bigWig signal p-value ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF142BBF, ENCFF821UAT 1542422773 ENCODE Processing Pipeline 894940465f61157369092bd222a60fcd https://www.encodeproject.org/files/ENCFF288IBW/@@download/ENCFF288IBW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF878QAQ bigWig fold change over control ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF821UAT 1123829320 ENCODE Processing Pipeline e52302eabbf3774d375d70dd5706edbc https://www.encodeproject.org/files/ENCFF878QAQ/@@download/ENCFF878QAQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF686VXK bigWig fold change over control ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF142BBF 1265927066 ENCODE Processing Pipeline 8597ded70d4fd8ab03a74643b4268113 https://www.encodeproject.org/files/ENCFF686VXK/@@download/ENCFF686VXK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF255THX bigWig fold change over control ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF142BBF, ENCFF821UAT 1701680083 ENCODE Processing Pipeline 6ef7c63d381e5a972f96f406214a2a05 https://www.encodeproject.org/files/ENCFF255THX/@@download/ENCFF255THX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF729VEU bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF142BBF, ENCFF821UAT 7108144 ENCODE Processing Pipeline 8b0f82e98e9380aa51bf041bddf91342 https://www.encodeproject.org/files/ENCFF729VEU/@@download/ENCFF729VEU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF041KDG bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF821UAT 6440691 ENCODE Processing Pipeline 5b176f09594e1e09415cfc1f567972a2 https://www.encodeproject.org/files/ENCFF041KDG/@@download/ENCFF041KDG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF231ARR bigBed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF041KDG 13486024 ENCODE Processing Pipeline 1054183002c61a081f5135879e8a7280 https://www.encodeproject.org/files/ENCFF231ARR/@@download/ENCFF231ARR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF185NKB bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF142BBF 6773382 ENCODE Processing Pipeline acd01a45f7ec69420681a1f7634cdb6a https://www.encodeproject.org/files/ENCFF185NKB/@@download/ENCFF185NKB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF482KHB bigBed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF185NKB 13369601 ENCODE Processing Pipeline 695eaadbcea616d0fab094ee09309933 https://www.encodeproject.org/files/ENCFF482KHB/@@download/ENCFF482KHB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF339KMW bigBed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF729VEU 13275339 ENCODE Processing Pipeline 79ba88af2f423c4428f63afada69d966 https://www.encodeproject.org/files/ENCFF339KMW/@@download/ENCFF339KMW.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF588MFA bed narrowPeak conservative idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF041KDG, ENCFF185NKB, ENCFF419RSJ, ENCFF729VEU 82766 ENCODE Processing Pipeline 4edb95768f352edc8bb0f0b7c21c600b https://www.encodeproject.org/files/ENCFF588MFA/@@download/ENCFF588MFA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF334BIX bigBed narrowPeak optimal idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF579PZW 442898 ENCODE Processing Pipeline d9c924df129272ceefff80b0032a22e6 https://www.encodeproject.org/files/ENCFF334BIX/@@download/ENCFF334BIX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF090UUR bigBed narrowPeak conservative idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF588MFA 221175 ENCODE Processing Pipeline 9e090c62cb36cba53c44878e744ad164 https://www.encodeproject.org/files/ENCFF090UUR/@@download/ENCFF090UUR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF579PZW bed narrowPeak optimal idr thresholded peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF041KDG, ENCFF185NKB, ENCFF419RSJ, ENCFF729VEU 222813 ENCODE Processing Pipeline 0a0cf39819e1f4a21a035150d7d9156f https://www.encodeproject.org/files/ENCFF579PZW/@@download/ENCFF579PZW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF592CBD fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF970GQF 3655788210 Michael Snyder, Stanford 8caa6646b0be7e654fa637f17ad7f033 SRA:SRR5112199 https://www.encodeproject.org/files/ENCFF592CBD/@@download/ENCFF592CBD.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF970GQF fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF592CBD 3357547323 Michael Snyder, Stanford 266674bafd5c81a6b7babbf0ea4108f4 SRA:SRR5112199 https://www.encodeproject.org/files/ENCFF970GQF/@@download/ENCFF970GQF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF202EJB fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF914KKF 3760025522 Michael Snyder, Stanford 8e5720ad6789f78be4ef17c3b8541a56 SRA:SRR5112200 https://www.encodeproject.org/files/ENCFF202EJB/@@download/ENCFF202EJB.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF914KKF fastq reads ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF202EJB 4178942090 Michael Snyder, Stanford a86416c22ec93435336431b1016e2c7e SRA:SRR5112200 https://www.encodeproject.org/files/ENCFF914KKF/@@download/ENCFF914KKF.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF426ILM bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF643CGH, ENCFF914KKF 7197234994 ENCODE Processing Pipeline 2710aadade873105f50611973464956a https://www.encodeproject.org/files/ENCFF426ILM/@@download/ENCFF426ILM.bam GRCh38 released mild to moderate bottlenecking ENCFF491QSR bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF643CGH, ENCFF970GQF 6553740828 ENCODE Processing Pipeline 3d72ba2531cbec4ac53537e2886395da https://www.encodeproject.org/files/ENCFF491QSR/@@download/ENCFF491QSR.bam GRCh38 released mild to moderate bottlenecking ENCFF216YZE bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF807MUK, ENCFF914KKF 7196767730 ENCODE Processing Pipeline 2287216506e8eb77b7157620d1ec46d6 https://www.encodeproject.org/files/ENCFF216YZE/@@download/ENCFF216YZE.bam hg19 released mild to moderate bottlenecking ENCFF565JZS bam unfiltered alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF807MUK, ENCFF970GQF 6553254289 ENCODE Processing Pipeline 79c9df62790006418014acc16c7d6385 https://www.encodeproject.org/files/ENCFF565JZS/@@download/ENCFF565JZS.bam hg19 released mild to moderate bottlenecking ENCFF580EVG bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF643CGH, ENCFF970GQF 4481096810 ENCODE Processing Pipeline 0f45c7b4113d154beef68824625c5371 https://www.encodeproject.org/files/ENCFF580EVG/@@download/ENCFF580EVG.bam GRCh38 released mild to moderate bottlenecking ENCFF736UXD bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF807MUK, ENCFF970GQF 4466230069 ENCODE Processing Pipeline 391985b0e6a90cd0908214e45b881fbe https://www.encodeproject.org/files/ENCFF736UXD/@@download/ENCFF736UXD.bam hg19 released mild to moderate bottlenecking ENCFF648SPM bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF807MUK, ENCFF914KKF 4908091092 ENCODE Processing Pipeline ecc8041b14fc2608047e90ad53a7d43c https://www.encodeproject.org/files/ENCFF648SPM/@@download/ENCFF648SPM.bam hg19 released mild to moderate bottlenecking ENCFF625RFM bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF643CGH, ENCFF914KKF 4919181865 ENCODE Processing Pipeline cbf49415d7cb174648daea12fef08588 https://www.encodeproject.org/files/ENCFF625RFM/@@download/ENCFF625RFM.bam GRCh38 released mild to moderate bottlenecking ENCFF586VWM bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 1507523708 ENCODE Processing Pipeline 7413c44febcd78ef3a21a3c70e8076a5 https://www.encodeproject.org/files/ENCFF586VWM/@@download/ENCFF586VWM.bigWig hg19 released mild to moderate bottlenecking ENCFF362IYC bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 1462633010 ENCODE Processing Pipeline ab949d555b5778d385e305981276fd9d https://www.encodeproject.org/files/ENCFF362IYC/@@download/ENCFF362IYC.bigWig hg19 released mild to moderate bottlenecking ENCFF715PTE bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF648SPM, ENCFF736UXD, ENCFF901CND 2313949543 ENCODE Processing Pipeline 93203e57e33aa0c952274834aea96c6f https://www.encodeproject.org/files/ENCFF715PTE/@@download/ENCFF715PTE.bigWig hg19 released mild to moderate bottlenecking ENCFF252DSL bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 1867022825 ENCODE Processing Pipeline e20dff3bc113f086c3ed4531041bfe22 https://www.encodeproject.org/files/ENCFF252DSL/@@download/ENCFF252DSL.bigWig hg19 released mild to moderate bottlenecking ENCFF251WBZ bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 1446681404 ENCODE Processing Pipeline 833080b3579c98f5c61c85f2ce0539fd https://www.encodeproject.org/files/ENCFF251WBZ/@@download/ENCFF251WBZ.bigWig hg19 released mild to moderate bottlenecking ENCFF576UWV bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF648SPM, ENCFF736UXD, ENCFF901CND 2440543893 ENCODE Processing Pipeline afde5389e064f8627348c9bc92635152 https://www.encodeproject.org/files/ENCFF576UWV/@@download/ENCFF576UWV.bigWig hg19 released mild to moderate bottlenecking ENCFF492EAL bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF648SPM, ENCFF736UXD, ENCFF901CND 7312273 ENCODE Processing Pipeline 2a0205300002fad10505b98d9df863cf https://www.encodeproject.org/files/ENCFF492EAL/@@download/ENCFF492EAL.bed.gz hg19 released mild to moderate bottlenecking ENCFF455HXY bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 7179191 ENCODE Processing Pipeline 6037a0d0b1073ae8d233714b1521e9be https://www.encodeproject.org/files/ENCFF455HXY/@@download/ENCFF455HXY.bed.gz hg19 released mild to moderate bottlenecking ENCFF795PEX bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 6957758 ENCODE Processing Pipeline b0c8e8e73bfd433eeb683f077d853aca https://www.encodeproject.org/files/ENCFF795PEX/@@download/ENCFF795PEX.bed.gz hg19 released mild to moderate bottlenecking ENCFF387XZE bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF795PEX 12723088 ENCODE Processing Pipeline 0ad270cfce760cbd9a7b226d05ef6d47 https://www.encodeproject.org/files/ENCFF387XZE/@@download/ENCFF387XZE.bigBed hg19 released mild to moderate bottlenecking ENCFF475ISL bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF455HXY 13047303 ENCODE Processing Pipeline fc592fae31e7532815317b285ae02b79 https://www.encodeproject.org/files/ENCFF475ISL/@@download/ENCFF475ISL.bigBed hg19 released mild to moderate bottlenecking ENCFF347FZH bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF492EAL 13065666 ENCODE Processing Pipeline 20110ee11f065790d04464256372e112 https://www.encodeproject.org/files/ENCFF347FZH/@@download/ENCFF347FZH.bigBed hg19 released mild to moderate bottlenecking ENCFF343VAG bed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF455HXY, ENCFF492EAL, ENCFF795PEX 981346 ENCODE Processing Pipeline 20f881850f0962d6e858458990dea10e https://www.encodeproject.org/files/ENCFF343VAG/@@download/ENCFF343VAG.bed.gz hg19 released mild to moderate bottlenecking ENCFF591MWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF343VAG 2046796 ENCODE Processing Pipeline 9fac042e51bc3f2351d34ca34e53c93a https://www.encodeproject.org/files/ENCFF591MWQ/@@download/ENCFF591MWQ.bigBed hg19 released mild to moderate bottlenecking ENCFF229YSW bed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF455HXY, ENCFF492EAL, ENCFF795PEX 1279497 ENCODE Processing Pipeline 82175322dd3d0a9e2c11ada5394bf2a7 https://www.encodeproject.org/files/ENCFF229YSW/@@download/ENCFF229YSW.bed.gz hg19 released mild to moderate bottlenecking ENCFF756WVN bigBed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF229YSW 2594150 ENCODE Processing Pipeline 8656229c6659104b3411853aece02881 https://www.encodeproject.org/files/ENCFF756WVN/@@download/ENCFF756WVN.bigBed hg19 released mild to moderate bottlenecking ENCFF137RSX bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF322NTO, ENCFF625RFM, ENCFF666ATR 1551622372 ENCODE Processing Pipeline 02fd5c32faf97a34d08290e09b78ca4d https://www.encodeproject.org/files/ENCFF137RSX/@@download/ENCFF137RSX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF678BHT bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF580EVG, ENCFF666ATR 1471652651 ENCODE Processing Pipeline 86006e1420163d0737973d1238e30b53 https://www.encodeproject.org/files/ENCFF678BHT/@@download/ENCFF678BHT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF630GUV bigWig signal p-value ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF322NTO, ENCFF580EVG, ENCFF625RFM, ENCFF666ATR 2304407887 ENCODE Processing Pipeline bc4a04891923419b70645a67108d7b58 https://www.encodeproject.org/files/ENCFF630GUV/@@download/ENCFF630GUV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF286EIX bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF322NTO, ENCFF625RFM, ENCFF666ATR 1867286461 ENCODE Processing Pipeline a85d95d799758c0eee621cf5ae5e2e7d https://www.encodeproject.org/files/ENCFF286EIX/@@download/ENCFF286EIX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF899FYK bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF580EVG, ENCFF666ATR 1459534650 ENCODE Processing Pipeline 70ce89d9299db52b4191c9e69b4e6c0f https://www.encodeproject.org/files/ENCFF899FYK/@@download/ENCFF899FYK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF723XZS bigWig fold change over control ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF322NTO, ENCFF580EVG, ENCFF625RFM, ENCFF666ATR 2427778997 ENCODE Processing Pipeline 00d0c777f5fc37db311c3fc56fc47c63 https://www.encodeproject.org/files/ENCFF723XZS/@@download/ENCFF723XZS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF414ELH bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF904SII 13085965 ENCODE Processing Pipeline 83a1fd68c277f5e5d9f08d4a4bdcb09a https://www.encodeproject.org/files/ENCFF414ELH/@@download/ENCFF414ELH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF904SII bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF322NTO, ENCFF625RFM, ENCFF666ATR 7254664 ENCODE Processing Pipeline b1d5116974164be69a5ca21938e93612 https://www.encodeproject.org/files/ENCFF904SII/@@download/ENCFF904SII.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF508RKH bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF266WKV 13063831 ENCODE Processing Pipeline 59d99ede8d65d842a7cdebe3f4e97ad6 https://www.encodeproject.org/files/ENCFF508RKH/@@download/ENCFF508RKH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF201JCN bed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF266WKV, ENCFF419RSJ, ENCFF765JAS, ENCFF904SII 982291 ENCODE Processing Pipeline 958eec1062ae2332cf8eead7fc50970b https://www.encodeproject.org/files/ENCFF201JCN/@@download/ENCFF201JCN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF911UJU bigBed narrowPeak conservative idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF201JCN 2049397 ENCODE Processing Pipeline 5b8c7baef14253352a01866fe5eec1df https://www.encodeproject.org/files/ENCFF911UJU/@@download/ENCFF911UJU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF838OPM bigBed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF968NOG 2587338 ENCODE Processing Pipeline 435f87164a0daea7bf9df0933c2157b9 https://www.encodeproject.org/files/ENCFF838OPM/@@download/ENCFF838OPM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF765JAS bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF580EVG, ENCFF666ATR 7198901 ENCODE Processing Pipeline 0fa2964ce8c805467081f2d499d9afb6 https://www.encodeproject.org/files/ENCFF765JAS/@@download/ENCFF765JAS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF266WKV bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF322NTO, ENCFF580EVG, ENCFF625RFM, ENCFF666ATR 7319119 ENCODE Processing Pipeline 2d1aef805f4428e56e8a568ccec35d58 https://www.encodeproject.org/files/ENCFF266WKV/@@download/ENCFF266WKV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF302GSE bigBed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF765JAS 13094543 ENCODE Processing Pipeline 1f3b7f586279074ebcc9296a843c16d4 https://www.encodeproject.org/files/ENCFF302GSE/@@download/ENCFF302GSE.bigBed GRCh38 released mild to moderate bottlenecking ENCFF968NOG bed narrowPeak optimal idr thresholded peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF266WKV, ENCFF419RSJ, ENCFF765JAS, ENCFF904SII 1274717 ENCODE Processing Pipeline f70aa165714248edc8b78aa07f9b3a35 https://www.encodeproject.org/files/ENCFF968NOG/@@download/ENCFF968NOG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF736KYF bam unfiltered alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIZ, ENCFF002EJC, ENCFF807MUK 7993684061 ENCODE Processing Pipeline 7cfa287f9cef1ad8bc56ef6c6a01d95f https://www.encodeproject.org/files/ENCFF736KYF/@@download/ENCFF736KYF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF271TUU bam unfiltered alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJE, ENCFF002EJH, ENCFF807MUK 8670484258 ENCODE Processing Pipeline 675bc5a30f01f98c4a53f1cdecb244f4 https://www.encodeproject.org/files/ENCFF271TUU/@@download/ENCFF271TUU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EIZ fastq reads ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EJC 3926483864 Michael Snyder, Stanford 87ef038fad4e4d1109bf1a85e9d37cd6 SRA:SRR5111206 https://www.encodeproject.org/files/ENCFF002EIZ/@@download/ENCFF002EIZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EJC fastq reads ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EIZ 3863623420 Michael Snyder, Stanford d99929decd38bb4545deadef59fe86f0 SRA:SRR5111206 https://www.encodeproject.org/files/ENCFF002EJC/@@download/ENCFF002EJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EJE fastq reads ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EJH 4048479655 Michael Snyder, Stanford facc6b276891fc13d765deb9077f358c SRA:SRR5111207 https://www.encodeproject.org/files/ENCFF002EJE/@@download/ENCFF002EJE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EJH fastq reads ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJE 4119366336 Michael Snyder, Stanford 71ed40d3a51361e9c8f4413190dbee92 SRA:SRR5111207 https://www.encodeproject.org/files/ENCFF002EJH/@@download/ENCFF002EJH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF686NWE bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIZ, ENCFF002EJC, ENCFF807MUK 6145022951 ENCODE Processing Pipeline cdc2bda4d37c4678a76fc0925fb4ceec https://www.encodeproject.org/files/ENCFF686NWE/@@download/ENCFF686NWE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF541OZF bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJE, ENCFF002EJH, ENCFF807MUK 7576163211 ENCODE Processing Pipeline 1065e15e8931a0f793c9a68de4918473 https://www.encodeproject.org/files/ENCFF541OZF/@@download/ENCFF541OZF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF641FNZ bigWig signal p-value ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL 1982005740 ENCODE Processing Pipeline 1e66eea0371576f9bc33d74280580391 https://www.encodeproject.org/files/ENCFF641FNZ/@@download/ENCFF641FNZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF989DME bigWig fold change over control ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL 2019299394 ENCODE Processing Pipeline bc4a78ec696aa8c8379ce3c6da68642d https://www.encodeproject.org/files/ENCFF989DME/@@download/ENCFF989DME.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF116JZW bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF686NWE 6978919 ENCODE Processing Pipeline cf5c9590a33d846f803d14df40f54a91 https://www.encodeproject.org/files/ENCFF116JZW/@@download/ENCFF116JZW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF845KEC bigWig signal p-value ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF686NWE 1121429634 ENCODE Processing Pipeline 0c5b4454e71dd15df12504dd22f434d5 https://www.encodeproject.org/files/ENCFF845KEC/@@download/ENCFF845KEC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF924SZQ bigWig fold change over control ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF686NWE 1437132658 ENCODE Processing Pipeline 18034fa6719c2fc8bb114003d54dd6bd https://www.encodeproject.org/files/ENCFF924SZQ/@@download/ENCFF924SZQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF598GWD bigBed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF116JZW 13650097 ENCODE Processing Pipeline 6cef821678752448b3aa5013f55ea317 https://www.encodeproject.org/files/ENCFF598GWD/@@download/ENCFF598GWD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF571ECM bigWig fold change over control ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL, ENCFF686NWE 2515200163 ENCODE Processing Pipeline a1c7b39367fae79abbc206c42c803e62 https://www.encodeproject.org/files/ENCFF571ECM/@@download/ENCFF571ECM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF117TCV bigBed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF267RGU 11335660 ENCODE Processing Pipeline b6b65c83be34a18648757b9ade73019a https://www.encodeproject.org/files/ENCFF117TCV/@@download/ENCFF117TCV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF905SQA bigWig signal p-value ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL, ENCFF686NWE 2438423538 ENCODE Processing Pipeline 9dd6ce2f5d70d14e6b401b7597eabbed https://www.encodeproject.org/files/ENCFF905SQA/@@download/ENCFF905SQA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF267RGU bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL 7085717 ENCODE Processing Pipeline 86e12d6a6279d291ed62cc05f1c9411f https://www.encodeproject.org/files/ENCFF267RGU/@@download/ENCFF267RGU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF876EHZ bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL, ENCFF686NWE 7253211 ENCODE Processing Pipeline 0457be4dfc44cdc4dccdf0556f3d019e https://www.encodeproject.org/files/ENCFF876EHZ/@@download/ENCFF876EHZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF795PUD bigBed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF876EHZ 13767000 ENCODE Processing Pipeline 81c3ca34f81e9aa2958226a684c18f3d https://www.encodeproject.org/files/ENCFF795PUD/@@download/ENCFF795PUD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF481VHS bam unfiltered alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIZ, ENCFF002EJC, ENCFF643CGH 8000788980 ENCODE Processing Pipeline d728764fb7e95b4d15176b0bb6750fe3 https://www.encodeproject.org/files/ENCFF481VHS/@@download/ENCFF481VHS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF369DNX bam unfiltered alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJE, ENCFF002EJH, ENCFF643CGH 8683654815 ENCODE Processing Pipeline 96ad24ba115abdf5cae1084999d5b317 https://www.encodeproject.org/files/ENCFF369DNX/@@download/ENCFF369DNX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF268CBK bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJE, ENCFF002EJH, ENCFF643CGH 7580253131 ENCODE Processing Pipeline b2bcb8476f0f3cde9a8fcf125b87b42f https://www.encodeproject.org/files/ENCFF268CBK/@@download/ENCFF268CBK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF253JTJ bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIZ, ENCFF002EJC, ENCFF643CGH 6146180127 ENCODE Processing Pipeline b5ec3479af5363e5e306c421e772c98c https://www.encodeproject.org/files/ENCFF253JTJ/@@download/ENCFF253JTJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF084JEQ bigWig signal p-value ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF253JTJ, ENCFF910IKB 1454148530 ENCODE Processing Pipeline 78fb8777e07d9938986db8ee0ae31ad8 https://www.encodeproject.org/files/ENCFF084JEQ/@@download/ENCFF084JEQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF127PSG bigWig signal p-value ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF268CBK, ENCFF910IKB 2011842757 ENCODE Processing Pipeline 3a6136a5872ba42878306bfa6563d33c https://www.encodeproject.org/files/ENCFF127PSG/@@download/ENCFF127PSG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF150AJK bigWig signal p-value ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF253JTJ, ENCFF268CBK, ENCFF910IKB 2431652987 ENCODE Processing Pipeline c81ca93ce056088dfce1a264334868d1 https://www.encodeproject.org/files/ENCFF150AJK/@@download/ENCFF150AJK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF440VUW bigWig fold change over control ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF253JTJ, ENCFF910IKB 1431447935 ENCODE Processing Pipeline 6b9a223b0927a9179252b40b46077c45 https://www.encodeproject.org/files/ENCFF440VUW/@@download/ENCFF440VUW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF339MVN bigWig fold change over control ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF268CBK, ENCFF910IKB 2018641057 ENCODE Processing Pipeline 813a37c3bc008ce83677f41d521cd17c https://www.encodeproject.org/files/ENCFF339MVN/@@download/ENCFF339MVN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF413WUI bigWig fold change over control ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF253JTJ, ENCFF268CBK, ENCFF910IKB 2506848343 ENCODE Processing Pipeline 33409a0f10aa0f823d7e6027dfd376e1 https://www.encodeproject.org/files/ENCFF413WUI/@@download/ENCFF413WUI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF221OAM bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF268CBK, ENCFF910IKB 7009064 ENCODE Processing Pipeline 448a39b077d4513658bfda7f2c220251 https://www.encodeproject.org/files/ENCFF221OAM/@@download/ENCFF221OAM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF465GUK bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF253JTJ, ENCFF910IKB 6975145 ENCODE Processing Pipeline 6b0fd18b95b306edf1053d274b8ad807 https://www.encodeproject.org/files/ENCFF465GUK/@@download/ENCFF465GUK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF290ESJ bed narrowPeak optimal idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048BGI, ENCFF221OAM, ENCFF419RSJ, ENCFF465GUK 861777 ENCODE Processing Pipeline cda2eb3701a3c2cf983119e3cb16ca41 https://www.encodeproject.org/files/ENCFF290ESJ/@@download/ENCFF290ESJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF048BGI bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF253JTJ, ENCFF268CBK, ENCFF910IKB 7225529 ENCODE Processing Pipeline 773ddfa0d6425cd17e06bb3dcf5d3dbf https://www.encodeproject.org/files/ENCFF048BGI/@@download/ENCFF048BGI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF873AFN bigBed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF465GUK 13737306 ENCODE Processing Pipeline 4cd304cdf8acc90837de68ca81bcc825 https://www.encodeproject.org/files/ENCFF873AFN/@@download/ENCFF873AFN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF688QFD bigBed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF221OAM 11332090 ENCODE Processing Pipeline f34df3200ba263d219536e6251325c75 https://www.encodeproject.org/files/ENCFF688QFD/@@download/ENCFF688QFD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF418BWE bed narrowPeak conservative idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048BGI, ENCFF221OAM, ENCFF419RSJ, ENCFF465GUK 634000 ENCODE Processing Pipeline 9e0cb2424df83a5fd404c4d65397f4a8 https://www.encodeproject.org/files/ENCFF418BWE/@@download/ENCFF418BWE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF233GYT bigBed narrowPeak optimal idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF290ESJ 1746111 ENCODE Processing Pipeline fcac0f1bfb9f140aca9082190ea8bca2 https://www.encodeproject.org/files/ENCFF233GYT/@@download/ENCFF233GYT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF520MVX bigBed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048BGI 13749328 ENCODE Processing Pipeline ff4e802f37cfe2839544a4bee8468ab7 https://www.encodeproject.org/files/ENCFF520MVX/@@download/ENCFF520MVX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF937IPC bigBed narrowPeak conservative idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF418BWE 1380091 ENCODE Processing Pipeline 6c3f7ae1e8d93f9a7522d2f9ce434411 https://www.encodeproject.org/files/ENCFF937IPC/@@download/ENCFF937IPC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF750YVW bigBed narrowPeak conservative idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF120MVT 986998 ENCODE Processing Pipeline 68393c4f647ef9eb501acdcbb65a09e6 https://www.encodeproject.org/files/ENCFF750YVW/@@download/ENCFF750YVW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF120MVT bed narrowPeak conservative idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF116JZW, ENCFF267RGU, ENCFF876EHZ 572629 ENCODE Processing Pipeline d95b5bae8dbbcd87ca390a6b07ccfc8b https://www.encodeproject.org/files/ENCFF120MVT/@@download/ENCFF120MVT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF432NDF bigBed narrowPeak optimal idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF895QLA 1226582 ENCODE Processing Pipeline 0a82df9af5033c2080529d3975d146a4 https://www.encodeproject.org/files/ENCFF432NDF/@@download/ENCFF432NDF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF895QLA bed narrowPeak optimal idr thresholded peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF116JZW, ENCFF267RGU, ENCFF876EHZ 767264 ENCODE Processing Pipeline 566a637ff871d08a8eb27aa1153826fb https://www.encodeproject.org/files/ENCFF895QLA/@@download/ENCFF895QLA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF572AYV fastq reads ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF081RWN 2945137591 Michael Snyder, Stanford fe781f8bc3eb70be52fc1273cfc16f17 SRA:SRR5111104 https://www.encodeproject.org/files/ENCFF572AYV/@@download/ENCFF572AYV.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF170KFC fastq reads ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF291MOB 3864736073 Michael Snyder, Stanford c6ad49f03f79b25db9c95571b51b520a SRA:SRR5111103 https://www.encodeproject.org/files/ENCFF170KFC/@@download/ENCFF170KFC.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF291MOB fastq reads ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF170KFC 3693229623 Michael Snyder, Stanford ca5939433050af57ea3b37986f354794 SRA:SRR5111103 https://www.encodeproject.org/files/ENCFF291MOB/@@download/ENCFF291MOB.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF081RWN fastq reads ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF572AYV 3118249736 Michael Snyder, Stanford cc27e4a5669a478525c486a0c70ca597 SRA:SRR5111104 https://www.encodeproject.org/files/ENCFF081RWN/@@download/ENCFF081RWN.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF212PUK bam unfiltered alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF081RWN, ENCFF572AYV, ENCFF643CGH 5977261868 ENCODE Processing Pipeline 4eb1dea15ac0a9a45e2c1dddddf97fdf https://www.encodeproject.org/files/ENCFF212PUK/@@download/ENCFF212PUK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF009IYW bam unfiltered alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF081RWN, ENCFF572AYV, ENCFF807MUK 5968793015 ENCODE Processing Pipeline 2d6612919ad4a54ccadd60b850a4106f https://www.encodeproject.org/files/ENCFF009IYW/@@download/ENCFF009IYW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF077RIS bam unfiltered alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF170KFC, ENCFF291MOB, ENCFF807MUK 7279755951 ENCODE Processing Pipeline 906642a387ca2a1e76e7920ed917471f https://www.encodeproject.org/files/ENCFF077RIS/@@download/ENCFF077RIS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF414GFO bam unfiltered alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF170KFC, ENCFF291MOB, ENCFF643CGH 7289867860 ENCODE Processing Pipeline fc86821bfab6eab5ce7cc9f0c37fce66 https://www.encodeproject.org/files/ENCFF414GFO/@@download/ENCFF414GFO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF822CZJ bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF081RWN, ENCFF572AYV, ENCFF643CGH 4923146061 ENCODE Processing Pipeline 0b6a53c614ab69bc4991a29f63746a7c https://www.encodeproject.org/files/ENCFF822CZJ/@@download/ENCFF822CZJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF122GSS bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF081RWN, ENCFF572AYV, ENCFF807MUK 4920127701 ENCODE Processing Pipeline 31fb27e676325dd4ca2f036d10c421ca https://www.encodeproject.org/files/ENCFF122GSS/@@download/ENCFF122GSS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF345DHS bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF170KFC, ENCFF291MOB, ENCFF807MUK 6014766185 ENCODE Processing Pipeline 6cded488f465c2b002fea57008e4314f https://www.encodeproject.org/files/ENCFF345DHS/@@download/ENCFF345DHS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF022KEN bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF170KFC, ENCFF291MOB, ENCFF643CGH 6019072565 ENCODE Processing Pipeline 49e056397ff9d4fb0c258e0693b44e56 https://www.encodeproject.org/files/ENCFF022KEN/@@download/ENCFF022KEN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF163EHR bigWig signal p-value ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF122GSS, ENCFF182WHU, ENCFF345DHS 1885757888 ENCODE Processing Pipeline e8aa4ec17fb80b4571b86fc3ff8724b6 https://www.encodeproject.org/files/ENCFF163EHR/@@download/ENCFF163EHR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF975ZMS bigWig signal p-value ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF122GSS, ENCFF182WHU 1733931481 ENCODE Processing Pipeline 4e6b02ad7080628a074d7b4bce112672 https://www.encodeproject.org/files/ENCFF975ZMS/@@download/ENCFF975ZMS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF799VXV bigWig signal p-value ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF345DHS 1565447431 ENCODE Processing Pipeline 67fe994be38f93d5dfd2e57e640dfc5e https://www.encodeproject.org/files/ENCFF799VXV/@@download/ENCFF799VXV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF998AMF bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF122GSS, ENCFF182WHU 7234029 ENCODE Processing Pipeline 301ff7f9d5b56d5783fa01d077ccf738 https://www.encodeproject.org/files/ENCFF998AMF/@@download/ENCFF998AMF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF928QQC bigWig fold change over control ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF122GSS, ENCFF182WHU 1740187335 ENCODE Processing Pipeline 9567847b7e2b45837717aa0e088b2664 https://www.encodeproject.org/files/ENCFF928QQC/@@download/ENCFF928QQC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF473FFX bigWig fold change over control ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF345DHS 1937728812 ENCODE Processing Pipeline cd6ed4cc93fe74ac61abe0a316924c35 https://www.encodeproject.org/files/ENCFF473FFX/@@download/ENCFF473FFX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF322WVK bigWig fold change over control ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF122GSS, ENCFF182WHU, ENCFF345DHS 2447432818 ENCODE Processing Pipeline 07606ff850af5287f0cc24c3570922c3 https://www.encodeproject.org/files/ENCFF322WVK/@@download/ENCFF322WVK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF595MZR bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF345DHS 7264830 ENCODE Processing Pipeline a3b36dc6811538d68376d3d9434a288d https://www.encodeproject.org/files/ENCFF595MZR/@@download/ENCFF595MZR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF751ORC bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF122GSS, ENCFF182WHU, ENCFF345DHS 7307104 ENCODE Processing Pipeline f2fb231706bc7fbc706b6acb1362e6bd https://www.encodeproject.org/files/ENCFF751ORC/@@download/ENCFF751ORC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF409LUL bigBed narrowPeak conservative idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF453PAJ 2008455 ENCODE Processing Pipeline e29242c1190d42a3f56c3e4497d08a64 https://www.encodeproject.org/files/ENCFF409LUL/@@download/ENCFF409LUL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF897CLZ bigBed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF998AMF 13034311 ENCODE Processing Pipeline 0fea40b506daaec8865858eb00f6fe84 https://www.encodeproject.org/files/ENCFF897CLZ/@@download/ENCFF897CLZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF163QDI bigBed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF751ORC 13102519 ENCODE Processing Pipeline 2ecd3f5347e6d9322cbef0ead5842880 https://www.encodeproject.org/files/ENCFF163QDI/@@download/ENCFF163QDI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF453PAJ bed narrowPeak conservative idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF595MZR, ENCFF751ORC, ENCFF998AMF 920790 ENCODE Processing Pipeline a7929a544aa681fa340f7120300dbaa7 https://www.encodeproject.org/files/ENCFF453PAJ/@@download/ENCFF453PAJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF781UYX bigBed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF595MZR 13134494 ENCODE Processing Pipeline 6a3d0557cc308512d9dc5bed65773f40 https://www.encodeproject.org/files/ENCFF781UYX/@@download/ENCFF781UYX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF950PWQ bed narrowPeak optimal idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF595MZR, ENCFF751ORC, ENCFF998AMF 944645 ENCODE Processing Pipeline 99548db68e2333c02eb8710b7565591a https://www.encodeproject.org/files/ENCFF950PWQ/@@download/ENCFF950PWQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF166HVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF950PWQ 1667790 ENCODE Processing Pipeline 0d4bbf85b1408391228a678bd93fe30c https://www.encodeproject.org/files/ENCFF166HVQ/@@download/ENCFF166HVQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF046VJF bigWig signal p-value ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF810LLR, ENCFF822CZJ 1724393848 ENCODE Processing Pipeline b7ce9b677e2fd1f400348288e75d6a3e https://www.encodeproject.org/files/ENCFF046VJF/@@download/ENCFF046VJF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF244OYM bigBed narrowPeak optimal idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF738CQK 2065468 ENCODE Processing Pipeline 420c989e4321fd26013b95d31a100b1e https://www.encodeproject.org/files/ENCFF244OYM/@@download/ENCFF244OYM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF344VBH bigWig fold change over control ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF810LLR, ENCFF822CZJ 1742520182 ENCODE Processing Pipeline 29d561bdddba31648357902a56434a08 https://www.encodeproject.org/files/ENCFF344VBH/@@download/ENCFF344VBH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF869MBQ bigWig signal p-value ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF022KEN, ENCFF810LLR, ENCFF822CZJ 1887847337 ENCODE Processing Pipeline ac5aa1f47559716727b4eb7a7cf9ed96 https://www.encodeproject.org/files/ENCFF869MBQ/@@download/ENCFF869MBQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF632OBS bigWig signal p-value ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF022KEN, ENCFF810LLR 1423822696 ENCODE Processing Pipeline ab64ac3d1191f3da6daa65342ae0cd69 https://www.encodeproject.org/files/ENCFF632OBS/@@download/ENCFF632OBS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF751ZLK bigWig fold change over control ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF022KEN, ENCFF810LLR 1953800433 ENCODE Processing Pipeline d2ceb77f0f06914124a429f0c56afecd https://www.encodeproject.org/files/ENCFF751ZLK/@@download/ENCFF751ZLK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF581ZXS bigWig fold change over control ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF022KEN, ENCFF810LLR, ENCFF822CZJ 2447710729 ENCODE Processing Pipeline 634db3297474bf8f844e45cab2e4180d https://www.encodeproject.org/files/ENCFF581ZXS/@@download/ENCFF581ZXS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF111NVY bed narrowPeak conservative idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF064AOB, ENCFF250FEN, ENCFF419RSJ, ENCFF729UHQ 922975 ENCODE Processing Pipeline f7018d6d2bfd551d44be46e902de588b https://www.encodeproject.org/files/ENCFF111NVY/@@download/ENCFF111NVY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF064AOB bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF810LLR, ENCFF822CZJ 7230357 ENCODE Processing Pipeline 2b5eeace7832efd165864cf51d405016 https://www.encodeproject.org/files/ENCFF064AOB/@@download/ENCFF064AOB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF729UHQ bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF022KEN, ENCFF810LLR, ENCFF822CZJ 7310127 ENCODE Processing Pipeline a5be8db0ca627fd3b3c6dad9db385229 https://www.encodeproject.org/files/ENCFF729UHQ/@@download/ENCFF729UHQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF880JNQ bigBed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF064AOB 13044955 ENCODE Processing Pipeline fea758347c86ea14dac8991d05653e23 https://www.encodeproject.org/files/ENCFF880JNQ/@@download/ENCFF880JNQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF533SOZ bigBed narrowPeak conservative idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF111NVY 2018295 ENCODE Processing Pipeline 95edab34a61f3710f98d2a869964dedf https://www.encodeproject.org/files/ENCFF533SOZ/@@download/ENCFF533SOZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF250FEN bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF022KEN, ENCFF810LLR 7260053 ENCODE Processing Pipeline f464913af518ce07bc4ec5132c9314dc https://www.encodeproject.org/files/ENCFF250FEN/@@download/ENCFF250FEN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF146FDH bigBed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF250FEN 13140892 ENCODE Processing Pipeline a3e574fb073789c029254e90aba08ad1 https://www.encodeproject.org/files/ENCFF146FDH/@@download/ENCFF146FDH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF512DEY bigBed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF729UHQ 13120334 ENCODE Processing Pipeline 61f7809fd3fd0b1872393379bff4d50a https://www.encodeproject.org/files/ENCFF512DEY/@@download/ENCFF512DEY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF738CQK bed narrowPeak optimal idr thresholded peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF064AOB, ENCFF250FEN, ENCFF419RSJ, ENCFF729UHQ 945279 ENCODE Processing Pipeline fe9d18bbe8cf1ec701c756a27527a930 https://www.encodeproject.org/files/ENCFF738CQK/@@download/ENCFF738CQK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF541IAK fastq reads ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF495AQO 2267218523 Michael Snyder, Stanford 550383d944611d5300a1fb88b92a6dfb SRA:SRR6213147 https://www.encodeproject.org/files/ENCFF541IAK/@@download/ENCFF541IAK.fastq.gz Illumina HiSeq 4000 /files/ENCFF293VFJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF495AQO fastq reads ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF541IAK 2552301623 Michael Snyder, Stanford 738efc2bbb1e85b768cca39231bdddd3 SRA:SRR6213147 https://www.encodeproject.org/files/ENCFF495AQO/@@download/ENCFF495AQO.fastq.gz Illumina HiSeq 4000 /files/ENCFF367IPF/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF903JMW bam unfiltered alignments ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF495AQO, ENCFF541IAK, ENCFF643CGH 4705124564 ENCODE Processing Pipeline 08837d6cea595bac60bea0c0a3f3a97f https://www.encodeproject.org/files/ENCFF903JMW/@@download/ENCFF903JMW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF667TEE bam alignments ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF495AQO, ENCFF541IAK, ENCFF643CGH 3761350446 ENCODE Processing Pipeline 3231f657d4651804e9467fcf5ffd9b03 https://www.encodeproject.org/files/ENCFF667TEE/@@download/ENCFF667TEE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF849XQR bam unfiltered alignments ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF495AQO, ENCFF541IAK, ENCFF807MUK 4698599170 ENCODE Processing Pipeline 364d65a8f3cc8001ab31be82ef6ec54f https://www.encodeproject.org/files/ENCFF849XQR/@@download/ENCFF849XQR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF025ZGL bam alignments ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF495AQO, ENCFF541IAK, ENCFF807MUK 3758737855 ENCODE Processing Pipeline e4731ac3c5dd4290e69279c77ca6054a https://www.encodeproject.org/files/ENCFF025ZGL/@@download/ENCFF025ZGL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF777TZZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF821KSJ 731972 ENCODE Processing Pipeline c020f1bb4782427adf2bb08433c53f20 https://www.encodeproject.org/files/ENCFF777TZZ/@@download/ENCFF777TZZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF621SVY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF777TZZ 1266251 ENCODE Processing Pipeline 8851665f729a643f6bea5b8cb05285a2 https://www.encodeproject.org/files/ENCFF621SVY/@@download/ENCFF621SVY.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF679NCQ bigWig fold change over control ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF025ZGL, ENCFF888YHU 1122479970 ENCODE Processing Pipeline add1b234384fc6536c46bfc74f3d6044 https://www.encodeproject.org/files/ENCFF679NCQ/@@download/ENCFF679NCQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF821KSJ bed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF025ZGL, ENCFF888YHU 6191786 ENCODE Processing Pipeline 1f024425ec70161ea3fd9530da6147ad https://www.encodeproject.org/files/ENCFF821KSJ/@@download/ENCFF821KSJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF987VYY bed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF242HNU, ENCFF667TEE 6192755 ENCODE Processing Pipeline f9d0fcf5b0d545d2bf74ef4a7c67e3af https://www.encodeproject.org/files/ENCFF987VYY/@@download/ENCFF987VYY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF159IXZ bigWig signal p-value ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF025ZGL, ENCFF888YHU 1247787572 ENCODE Processing Pipeline 429b6b79c92cb64518274da4167210ba https://www.encodeproject.org/files/ENCFF159IXZ/@@download/ENCFF159IXZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF370KLI bigBed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF821KSJ 11713095 ENCODE Processing Pipeline 47167f078a988b78dc7475bfc0059966 https://www.encodeproject.org/files/ENCFF370KLI/@@download/ENCFF370KLI.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF872DRZ bigWig signal p-value ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF242HNU, ENCFF667TEE 1275900706 ENCODE Processing Pipeline 799eb0a06a465b09fca8f4dd43344fb8 https://www.encodeproject.org/files/ENCFF872DRZ/@@download/ENCFF872DRZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF805FIF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF987VYY 735051 ENCODE Processing Pipeline 6f24df5cbdc611f7a791b0266fa20fe6 https://www.encodeproject.org/files/ENCFF805FIF/@@download/ENCFF805FIF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF112FNQ bigWig fold change over control ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF242HNU, ENCFF667TEE 1118690745 ENCODE Processing Pipeline cea8890d7c5ceda89c53e91f99b25dad https://www.encodeproject.org/files/ENCFF112FNQ/@@download/ENCFF112FNQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF466NBV bigBed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF987VYY 11729999 ENCODE Processing Pipeline 085511430a8101d6e0685cf354f3230d https://www.encodeproject.org/files/ENCFF466NBV/@@download/ENCFF466NBV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF454KXV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF805FIF 1273874 ENCODE Processing Pipeline b46832f249c625cd86cdf752e32ebd27 https://www.encodeproject.org/files/ENCFF454KXV/@@download/ENCFF454KXV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF538RDL bam unfiltered alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 100 ENCFF156BTH, ENCFF521TTL, ENCFF807MUK 6624895769 ENCODE Processing Pipeline 78a491eefebd6e8b4ef61320e71e8f10 https://www.encodeproject.org/files/ENCFF538RDL/@@download/ENCFF538RDL.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF715ZDS bam unfiltered alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 100 ENCFF110BCH, ENCFF115KHD, ENCFF807MUK 6172552122 ENCODE Processing Pipeline 24b1dc9c262b272b9156d20353e2b99b https://www.encodeproject.org/files/ENCFF715ZDS/@@download/ENCFF715ZDS.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF115KHD fastq reads ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF110BCH 2757488080 Michael Snyder, Stanford 61701f50fe165ff4f92762a446f5683f SRA:SRR6213272 https://www.encodeproject.org/files/ENCFF115KHD/@@download/ENCFF115KHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released file validation error, borderline replicate concordance mismatched file status ENCFF110BCH fastq reads ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF115KHD 2791990483 Michael Snyder, Stanford 194cf73c28315810b0644f79a0cdcb38 SRA:SRR6213272 https://www.encodeproject.org/files/ENCFF110BCH/@@download/ENCFF110BCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released file validation error, borderline replicate concordance mismatched file status ENCFF521TTL fastq reads ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF156BTH 2981586831 Michael Snyder, Stanford c182fea0a37411d9a27694da60e131cc SRA:SRR6213271 https://www.encodeproject.org/files/ENCFF521TTL/@@download/ENCFF521TTL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released file validation error, borderline replicate concordance mismatched file status ENCFF156BTH fastq reads ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF521TTL 3011765451 Michael Snyder, Stanford 4d69cd241239346ef034a805dcc47c96 SRA:SRR6213271 https://www.encodeproject.org/files/ENCFF156BTH/@@download/ENCFF156BTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released file validation error, borderline replicate concordance mismatched file status ENCFF094YRM bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 100 ENCFF110BCH, ENCFF115KHD, ENCFF807MUK 5109858548 ENCODE Processing Pipeline 56a96e79890f70a87b2890a00cf3d330 https://www.encodeproject.org/files/ENCFF094YRM/@@download/ENCFF094YRM.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF192DWU bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 100 ENCFF156BTH, ENCFF521TTL, ENCFF807MUK 5514553615 ENCODE Processing Pipeline aa7df4e99ca63b4c32c3683f238aef19 https://www.encodeproject.org/files/ENCFF192DWU/@@download/ENCFF192DWU.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF512XIO bigWig signal p-value ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF094YRM, ENCFF449NNE 1292857799 ENCODE Processing Pipeline 5da30610701aed483ad20813b5aaee8f https://www.encodeproject.org/files/ENCFF512XIO/@@download/ENCFF512XIO.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF945OVX bigWig signal p-value ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF192DWU, ENCFF999EQI 1151972877 ENCODE Processing Pipeline b8f81ffb7b088c995f85c427bb68fc73 https://www.encodeproject.org/files/ENCFF945OVX/@@download/ENCFF945OVX.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF983LQD bigWig signal p-value ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF094YRM, ENCFF192DWU, ENCFF449NNE, ENCFF999EQI 1794079572 ENCODE Processing Pipeline 49c2ccc97a598217639a7637e20e962c https://www.encodeproject.org/files/ENCFF983LQD/@@download/ENCFF983LQD.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF090OBV bigWig fold change over control ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF094YRM, ENCFF449NNE 1273224760 ENCODE Processing Pipeline 3cd4721d58b2aadfb12c59d521d4eb04 https://www.encodeproject.org/files/ENCFF090OBV/@@download/ENCFF090OBV.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF395VZS bigWig fold change over control ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF192DWU, ENCFF999EQI 1192879475 ENCODE Processing Pipeline 10479ea7630d15745ea71263283ca3be https://www.encodeproject.org/files/ENCFF395VZS/@@download/ENCFF395VZS.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF675GQK bigWig fold change over control ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF094YRM, ENCFF192DWU, ENCFF449NNE, ENCFF999EQI 2197402339 ENCODE Processing Pipeline 69d936f9474cb6cf0fca115767bc8675 https://www.encodeproject.org/files/ENCFF675GQK/@@download/ENCFF675GQK.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF171UYN bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF094YRM, ENCFF449NNE 6090064 ENCODE Processing Pipeline 9d56ef94bfc552c2fe7bc71c368762cb https://www.encodeproject.org/files/ENCFF171UYN/@@download/ENCFF171UYN.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF383SFZ bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF192DWU, ENCFF999EQI 6208081 ENCODE Processing Pipeline 9209eca9611e254b4ffa882ebf11729a https://www.encodeproject.org/files/ENCFF383SFZ/@@download/ENCFF383SFZ.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF044KJR bigBed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF171UYN 11311038 ENCODE Processing Pipeline 43a281f6200745e70dda0001d85f3924 https://www.encodeproject.org/files/ENCFF044KJR/@@download/ENCFF044KJR.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF289OSX bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF094YRM, ENCFF192DWU, ENCFF449NNE, ENCFF999EQI 7117985 ENCODE Processing Pipeline c1914c5184a832ca42ea5bd1a32e5503 https://www.encodeproject.org/files/ENCFF289OSX/@@download/ENCFF289OSX.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF135CDX bigBed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF383SFZ 11387368 ENCODE Processing Pipeline 7822c89b717b0aac4fdeda93ddac1675 https://www.encodeproject.org/files/ENCFF135CDX/@@download/ENCFF135CDX.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF220KDV bigBed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF289OSX 11339506 ENCODE Processing Pipeline 2afed1e93e18458b2b1233f436902505 https://www.encodeproject.org/files/ENCFF220KDV/@@download/ENCFF220KDV.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF985NVN bed narrowPeak conservative idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF171UYN, ENCFF289OSX, ENCFF383SFZ 18382 ENCODE Processing Pipeline 2de055d5700176ab164c451b5994e541 https://www.encodeproject.org/files/ENCFF985NVN/@@download/ENCFF985NVN.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF696FPE bigBed narrowPeak conservative idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF775ZWX 92959 ENCODE Processing Pipeline be95ac22e601e6934397ebc973a087dd https://www.encodeproject.org/files/ENCFF696FPE/@@download/ENCFF696FPE.bigBed hg19 released file validation error, borderline replicate concordance mismatched status, mismatched file status ENCFF623ALA bed narrowPeak optimal idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF171UYN, ENCFF289OSX, ENCFF383SFZ 43005 ENCODE Processing Pipeline 4e81358d720dfe33459f0f2bd5d414c3 https://www.encodeproject.org/files/ENCFF623ALA/@@download/ENCFF623ALA.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF418JPC bigBed narrowPeak optimal idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF755BOT 138906 ENCODE Processing Pipeline bfb316ffbafc1d235a6f8b3108511b21 https://www.encodeproject.org/files/ENCFF418JPC/@@download/ENCFF418JPC.bigBed hg19 released file validation error, borderline replicate concordance mismatched status, mismatched file status ENCFF488IEY bam unfiltered alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 100 ENCFF110BCH, ENCFF115KHD, ENCFF643CGH 6186721646 ENCODE Processing Pipeline 7ffeb2985d55748dd721a40c0f178b64 https://www.encodeproject.org/files/ENCFF488IEY/@@download/ENCFF488IEY.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF541HKM bam unfiltered alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 100 ENCFF156BTH, ENCFF521TTL, ENCFF643CGH 6639125391 ENCODE Processing Pipeline ca213804a9d91071995cf2a9ee99d6d3 https://www.encodeproject.org/files/ENCFF541HKM/@@download/ENCFF541HKM.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF172UCO bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 100 ENCFF110BCH, ENCFF115KHD, ENCFF643CGH 5127202841 ENCODE Processing Pipeline 7051f69358a927fad21027998e7aa319 https://www.encodeproject.org/files/ENCFF172UCO/@@download/ENCFF172UCO.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF107HRF bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 100 ENCFF156BTH, ENCFF521TTL, ENCFF643CGH 5532411663 ENCODE Processing Pipeline ce21ccc53fa352e89224b2eadabd57c6 https://www.encodeproject.org/files/ENCFF107HRF/@@download/ENCFF107HRF.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF294PAL bigWig signal p-value ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF172UCO, ENCFF190EPQ 1243626780 ENCODE Processing Pipeline 326c7b1a3f779d0e3a6855cb5a772ff0 https://www.encodeproject.org/files/ENCFF294PAL/@@download/ENCFF294PAL.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF736GLS bigWig signal p-value ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF107HRF, ENCFF950AXC 939746430 ENCODE Processing Pipeline 888bd830160a691d0d152006dea75fe8 https://www.encodeproject.org/files/ENCFF736GLS/@@download/ENCFF736GLS.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF962NQE bigWig signal p-value ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF107HRF, ENCFF172UCO, ENCFF190EPQ, ENCFF950AXC 1643691369 ENCODE Processing Pipeline f450e95b0de658cda65eb3752ea1bdde https://www.encodeproject.org/files/ENCFF962NQE/@@download/ENCFF962NQE.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF586ZDQ bigWig fold change over control ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF172UCO, ENCFF190EPQ 1285188645 ENCODE Processing Pipeline 77523745aeed768aa801bcbad24066b5 https://www.encodeproject.org/files/ENCFF586ZDQ/@@download/ENCFF586ZDQ.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF271EPX bigWig fold change over control ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF107HRF, ENCFF950AXC 1229256356 ENCODE Processing Pipeline c4569c6e02d024df37dc32bc23d2dff5 https://www.encodeproject.org/files/ENCFF271EPX/@@download/ENCFF271EPX.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF566GIR bigWig fold change over control ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF107HRF, ENCFF172UCO, ENCFF190EPQ, ENCFF950AXC 2187285960 ENCODE Processing Pipeline 448860e70da895f393d882aeb3280b6d https://www.encodeproject.org/files/ENCFF566GIR/@@download/ENCFF566GIR.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF011EBM bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF172UCO, ENCFF190EPQ 5920982 ENCODE Processing Pipeline c02aa9a6f6b5b1196c01185867866596 https://www.encodeproject.org/files/ENCFF011EBM/@@download/ENCFF011EBM.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF533FED bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF107HRF, ENCFF950AXC 6040288 ENCODE Processing Pipeline 27f05df3aed57affdfd945a5bb72a1b9 https://www.encodeproject.org/files/ENCFF533FED/@@download/ENCFF533FED.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF748TAZ bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF107HRF, ENCFF172UCO, ENCFF190EPQ, ENCFF950AXC 7048991 ENCODE Processing Pipeline 17484698a7ccb95c9fbe7506fa0bce71 https://www.encodeproject.org/files/ENCFF748TAZ/@@download/ENCFF748TAZ.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF420FAQ bigBed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF533FED 11394499 ENCODE Processing Pipeline 64ad98d57418220203146f20b5ba70e5 https://www.encodeproject.org/files/ENCFF420FAQ/@@download/ENCFF420FAQ.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF164LUZ bigBed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF748TAZ 11360842 ENCODE Processing Pipeline 1f3b7bec5379520a683eafbdd6646521 https://www.encodeproject.org/files/ENCFF164LUZ/@@download/ENCFF164LUZ.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF506CYB bigBed narrowPeak optimal idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF063GDN 150345 ENCODE Processing Pipeline fdc36184bee16250a29446b1108ad28e https://www.encodeproject.org/files/ENCFF506CYB/@@download/ENCFF506CYB.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF749CHM bigBed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF011EBM 11314861 ENCODE Processing Pipeline 92a4ff8ce374b027d6c05a646297676e https://www.encodeproject.org/files/ENCFF749CHM/@@download/ENCFF749CHM.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF840OHH bed narrowPeak conservative idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF011EBM, ENCFF419RSJ, ENCFF533FED, ENCFF748TAZ 22685 ENCODE Processing Pipeline f376694fd208058f2e7dce2393ae0e2a https://www.encodeproject.org/files/ENCFF840OHH/@@download/ENCFF840OHH.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF952DEX bigBed narrowPeak conservative idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF840OHH 117621 ENCODE Processing Pipeline 38f1cf5251528416e5936f351826452c https://www.encodeproject.org/files/ENCFF952DEX/@@download/ENCFF952DEX.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF063GDN bed narrowPeak optimal idr thresholded peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF011EBM, ENCFF419RSJ, ENCFF533FED, ENCFF748TAZ 47589 ENCODE Processing Pipeline 26c76c4aff00d0d22fb2f8a2604f0749 https://www.encodeproject.org/files/ENCFF063GDN/@@download/ENCFF063GDN.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF613EQS fastq reads ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF899AEL 2840579184 Michael Snyder, Stanford e95f3907db1483dced70168e300e1241 SRA:SRR5111831 https://www.encodeproject.org/files/ENCFF613EQS/@@download/ENCFF613EQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF899AEL fastq reads ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF613EQS 2874826826 Michael Snyder, Stanford 670b2f3dee45937490dee75851291511 SRA:SRR5111831 https://www.encodeproject.org/files/ENCFF899AEL/@@download/ENCFF899AEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF177UXL fastq reads ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF568ZTC 3289460819 Michael Snyder, Stanford ad043c56108c4dee348c277c5bedb703 SRA:SRR5111830 https://www.encodeproject.org/files/ENCFF177UXL/@@download/ENCFF177UXL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF568ZTC fastq reads ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF177UXL 3288847903 Michael Snyder, Stanford 216019a9ae0cd6c748de06df8191adbc SRA:SRR5111830 https://www.encodeproject.org/files/ENCFF568ZTC/@@download/ENCFF568ZTC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF448RBO bam unfiltered alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF177UXL, ENCFF568ZTC, ENCFF807MUK 6536911908 ENCODE Processing Pipeline 1df58cdb33c50606977c9f6b40ce68ec https://www.encodeproject.org/files/ENCFF448RBO/@@download/ENCFF448RBO.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF027UZK bam unfiltered alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF613EQS, ENCFF807MUK, ENCFF899AEL 6282164393 ENCODE Processing Pipeline e7007fe79ad86202d70a5fd5269ec235 https://www.encodeproject.org/files/ENCFF027UZK/@@download/ENCFF027UZK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF120PSC bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF613EQS, ENCFF807MUK, ENCFF899AEL 5353820973 ENCODE Processing Pipeline d26b0932ad8ca215becea15f2b51510c https://www.encodeproject.org/files/ENCFF120PSC/@@download/ENCFF120PSC.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF213KHA bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF177UXL, ENCFF568ZTC, ENCFF807MUK 5729434942 ENCODE Processing Pipeline 71862395d8d1c5796aa477e9259f5522 https://www.encodeproject.org/files/ENCFF213KHA/@@download/ENCFF213KHA.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF925VZS bam unfiltered alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF177UXL, ENCFF568ZTC, ENCFF643CGH 6545172168 ENCODE Processing Pipeline 40e107d344493523b441f628008e99e9 https://www.encodeproject.org/files/ENCFF925VZS/@@download/ENCFF925VZS.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF616DSF bam unfiltered alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF613EQS, ENCFF643CGH, ENCFF899AEL 6288825521 ENCODE Processing Pipeline f84d11e7ebca73ce5d4b197a3f0633d8 https://www.encodeproject.org/files/ENCFF616DSF/@@download/ENCFF616DSF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF918HBF bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF177UXL, ENCFF568ZTC, ENCFF643CGH 5733423415 ENCODE Processing Pipeline f49e055d73b08d9100b17648c4e1126e https://www.encodeproject.org/files/ENCFF918HBF/@@download/ENCFF918HBF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF172UYR bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF613EQS, ENCFF643CGH, ENCFF899AEL 5355405725 ENCODE Processing Pipeline 6c6eb0cde8baf1596d0d365eec943689 https://www.encodeproject.org/files/ENCFF172UYR/@@download/ENCFF172UYR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF826JIA bigWig signal p-value ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120PSC 1436949674 ENCODE Processing Pipeline 0038c0bee2f73cb95ae6af24be8cddb4 https://www.encodeproject.org/files/ENCFF826JIA/@@download/ENCFF826JIA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF103KMO bigWig signal p-value ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF213KHA 1364567420 ENCODE Processing Pipeline 8b4ab7581472c9fe30c398332f85278d https://www.encodeproject.org/files/ENCFF103KMO/@@download/ENCFF103KMO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF396UGA bigWig signal p-value ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF120PSC, ENCFF213KHA 1990906802 ENCODE Processing Pipeline 6982c8a85e0f163443a84d1dac6206ae https://www.encodeproject.org/files/ENCFF396UGA/@@download/ENCFF396UGA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF147IES bigWig fold change over control ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120PSC 1482402716 ENCODE Processing Pipeline 2d6c7970a0873ea14873f8aee6ba5b8e https://www.encodeproject.org/files/ENCFF147IES/@@download/ENCFF147IES.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF503PXI bigWig fold change over control ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF213KHA 1618316696 ENCODE Processing Pipeline 5bd7bbd10526df0ef6553dc76a5af504 https://www.encodeproject.org/files/ENCFF503PXI/@@download/ENCFF503PXI.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF207FSU bigWig fold change over control ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF120PSC, ENCFF213KHA 2163719902 ENCODE Processing Pipeline 83919dc6f39ed7ea3d0b5ba7638f4c67 https://www.encodeproject.org/files/ENCFF207FSU/@@download/ENCFF207FSU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF273RBL bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120PSC 6840277 ENCODE Processing Pipeline c9779adadbb60d243f16af4c16ef2c8a https://www.encodeproject.org/files/ENCFF273RBL/@@download/ENCFF273RBL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF325RLP bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF213KHA 6866963 ENCODE Processing Pipeline a8a4448f38f187792e0db020674c2afc https://www.encodeproject.org/files/ENCFF325RLP/@@download/ENCFF325RLP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF331QMN bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF120PSC, ENCFF213KHA 7293265 ENCODE Processing Pipeline 067d9c90f7488663aab56f1ef6c326e7 https://www.encodeproject.org/files/ENCFF331QMN/@@download/ENCFF331QMN.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF568BTD bigBed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF273RBL 13413861 ENCODE Processing Pipeline 91d7195d8cd5c946f30a40debe7da081 https://www.encodeproject.org/files/ENCFF568BTD/@@download/ENCFF568BTD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF644PTQ bigBed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF325RLP 11193686 ENCODE Processing Pipeline e1491af81adc60fd335124b58138f062 https://www.encodeproject.org/files/ENCFF644PTQ/@@download/ENCFF644PTQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF250DUU bigBed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF331QMN 13379216 ENCODE Processing Pipeline 4e7b4b1bb3ce08f5c09f30d097f82a5b https://www.encodeproject.org/files/ENCFF250DUU/@@download/ENCFF250DUU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF257CVI bed narrowPeak conservative idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF273RBL, ENCFF325RLP, ENCFF331QMN 130285 ENCODE Processing Pipeline 469a7f3033d989a04a9d9220eb695dd6 https://www.encodeproject.org/files/ENCFF257CVI/@@download/ENCFF257CVI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF783PLT bed narrowPeak optimal idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF273RBL, ENCFF325RLP, ENCFF331QMN 238085 ENCODE Processing Pipeline 7303265a2974371b5eeb954064f4155b https://www.encodeproject.org/files/ENCFF783PLT/@@download/ENCFF783PLT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF236YKH bigBed narrowPeak conservative idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF257CVI 285186 ENCODE Processing Pipeline e43bd6d57fad56009718e72626301c96 https://www.encodeproject.org/files/ENCFF236YKH/@@download/ENCFF236YKH.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF999IEW bigBed narrowPeak optimal idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF783PLT 529193 ENCODE Processing Pipeline b75fa34b99eb129869f90a4ecb302332 https://www.encodeproject.org/files/ENCFF999IEW/@@download/ENCFF999IEW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF330INA bigWig signal p-value ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF172UYR 1223243897 ENCODE Processing Pipeline 389f8214314376781d553d8c4f9e0077 https://www.encodeproject.org/files/ENCFF330INA/@@download/ENCFF330INA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF454WZL bigWig signal p-value ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF918HBF 1473975305 ENCODE Processing Pipeline 286f604b1b278f9b57f966f84e7ad2a8 https://www.encodeproject.org/files/ENCFF454WZL/@@download/ENCFF454WZL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF486FME bigWig signal p-value ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF172UYR, ENCFF918HBF 1945311239 ENCODE Processing Pipeline 764bbede13edbb37fd57caf653070988 https://www.encodeproject.org/files/ENCFF486FME/@@download/ENCFF486FME.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF598PWS bigWig fold change over control ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF172UYR 1513348236 ENCODE Processing Pipeline c250c4ec4ffde1b816484439f61a7fcc https://www.encodeproject.org/files/ENCFF598PWS/@@download/ENCFF598PWS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF973IWW bigWig fold change over control ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF918HBF 1625012141 ENCODE Processing Pipeline e495dcacf42f232a7b8998ba2f9a3e8f https://www.encodeproject.org/files/ENCFF973IWW/@@download/ENCFF973IWW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF100XMW bigWig fold change over control ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF172UYR, ENCFF918HBF 2108056569 ENCODE Processing Pipeline 97c4ba0cb63a3ad17cc708209dc0c869 https://www.encodeproject.org/files/ENCFF100XMW/@@download/ENCFF100XMW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF668XFB bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF918HBF 6721961 ENCODE Processing Pipeline 2e5c1251752e0a92653af9932f9b782e https://www.encodeproject.org/files/ENCFF668XFB/@@download/ENCFF668XFB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF887MWT bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF172UYR 6716325 ENCODE Processing Pipeline 74b66d94141199cec96d92d553ae5c3d https://www.encodeproject.org/files/ENCFF887MWT/@@download/ENCFF887MWT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF946UZA bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF172UYR, ENCFF918HBF 7267078 ENCODE Processing Pipeline 509a70356dbd3a386f803ec2a45a91bd https://www.encodeproject.org/files/ENCFF946UZA/@@download/ENCFF946UZA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF622ONU bigBed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF668XFB 11214627 ENCODE Processing Pipeline 16da27f56538c7fdb0d3cce6f26dffd4 https://www.encodeproject.org/files/ENCFF622ONU/@@download/ENCFF622ONU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF244GEM bigBed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF887MWT 13429299 ENCODE Processing Pipeline ddb1954416084c670b9d96f2b55ce421 https://www.encodeproject.org/files/ENCFF244GEM/@@download/ENCFF244GEM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF903AMR bed narrowPeak optimal idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF668XFB, ENCFF887MWT, ENCFF946UZA 237187 ENCODE Processing Pipeline f3439e4e437e4f2519a8b7652b939df4 https://www.encodeproject.org/files/ENCFF903AMR/@@download/ENCFF903AMR.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF874FUK bigBed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF946UZA 13386638 ENCODE Processing Pipeline 816b5871ad36f1d2785efb647fe059d7 https://www.encodeproject.org/files/ENCFF874FUK/@@download/ENCFF874FUK.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF799ERW bigBed narrowPeak optimal idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF903AMR 529765 ENCODE Processing Pipeline 2c78920e4282ae322f52491792cca212 https://www.encodeproject.org/files/ENCFF799ERW/@@download/ENCFF799ERW.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF759SNQ bed narrowPeak conservative idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF668XFB, ENCFF887MWT, ENCFF946UZA 133884 ENCODE Processing Pipeline eb99187db48abb7f653ac085a7902699 https://www.encodeproject.org/files/ENCFF759SNQ/@@download/ENCFF759SNQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF448IDI bigBed narrowPeak conservative idr thresholded peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF759SNQ 290523 ENCODE Processing Pipeline e6f84b527a4d94b9b9561de2187b989c https://www.encodeproject.org/files/ENCFF448IDI/@@download/ENCFF448IDI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF942YMQ fastq reads ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF836EUU 2527733699 Michael Snyder, Stanford bbc8561f698e10ad243356b4d4f75fce SRA:SRR6213966 https://www.encodeproject.org/files/ENCFF942YMQ/@@download/ENCFF942YMQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF836EUU fastq reads ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF942YMQ 2502399910 Michael Snyder, Stanford f7a6fb4c3af473eb0a163d275505b1e0 SRA:SRR6213966 https://www.encodeproject.org/files/ENCFF836EUU/@@download/ENCFF836EUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF758UPX fastq reads ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF164VSR 2062364762 Michael Snyder, Stanford afec7f9303fe658893aaef30f6f01bef SRA:SRR6213967 https://www.encodeproject.org/files/ENCFF758UPX/@@download/ENCFF758UPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF164VSR fastq reads ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF758UPX 2041071670 Michael Snyder, Stanford 6842ccf84778b4e705fd083fc01189ba SRA:SRR6213967 https://www.encodeproject.org/files/ENCFF164VSR/@@download/ENCFF164VSR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF909EWL bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF164VSR, ENCFF758UPX, ENCFF807MUK 3617227696 ENCODE Processing Pipeline e5ba5ba13232bf4bee7a624299a1c486 https://www.encodeproject.org/files/ENCFF909EWL/@@download/ENCFF909EWL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF955OIU bam unfiltered alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF164VSR, ENCFF758UPX, ENCFF807MUK 4206961404 ENCODE Processing Pipeline 20ec2a940388210305019e708dabe5d7 https://www.encodeproject.org/files/ENCFF955OIU/@@download/ENCFF955OIU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF244XLC bam unfiltered alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF164VSR, ENCFF643CGH, ENCFF758UPX 4213406406 ENCODE Processing Pipeline 5bdfc1512ea32ff19b7ec43680f24b05 https://www.encodeproject.org/files/ENCFF244XLC/@@download/ENCFF244XLC.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF113CDP bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF164VSR, ENCFF643CGH, ENCFF758UPX 3618492770 ENCODE Processing Pipeline b64eb7f5a2e3f9c348170129030b333f https://www.encodeproject.org/files/ENCFF113CDP/@@download/ENCFF113CDP.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF221KGN bam unfiltered alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF836EUU, ENCFF942YMQ 5097576298 ENCODE Processing Pipeline 0a3c21f9aca8363956107258d9155a47 https://www.encodeproject.org/files/ENCFF221KGN/@@download/ENCFF221KGN.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF426ZNF bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF836EUU, ENCFF942YMQ 4419440063 ENCODE Processing Pipeline 53dd99d3ef376279730735cc9f938aae https://www.encodeproject.org/files/ENCFF426ZNF/@@download/ENCFF426ZNF.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF450BIR bam unfiltered alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF836EUU, ENCFF942YMQ 5105315244 ENCODE Processing Pipeline fed9bcd2b305a64b8336db6f312c6a74 https://www.encodeproject.org/files/ENCFF450BIR/@@download/ENCFF450BIR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF628HJJ bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF836EUU, ENCFF942YMQ 4421121236 ENCODE Processing Pipeline 37db51cc2e3bf6518903e9e59258694b https://www.encodeproject.org/files/ENCFF628HJJ/@@download/ENCFF628HJJ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF174FKU bigWig signal p-value ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF113CDP 1217853990 ENCODE Processing Pipeline 7d77fc4459bfe4d650ae07024de2f64f https://www.encodeproject.org/files/ENCFF174FKU/@@download/ENCFF174FKU.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF907IHR bigWig signal p-value ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF628HJJ 1328117652 ENCODE Processing Pipeline d6addee72aec1c11ac86b89f170540a0 https://www.encodeproject.org/files/ENCFF907IHR/@@download/ENCFF907IHR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF802QWQ bigWig signal p-value ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF426ZNF 1179196880 ENCODE Processing Pipeline 6239a6199997069bb31139443baf3426 https://www.encodeproject.org/files/ENCFF802QWQ/@@download/ENCFF802QWQ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF739QFL bigWig signal p-value ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF113CDP, ENCFF628HJJ 1539031947 ENCODE Processing Pipeline bd8b8fad51cf171ca8cfe11cbb438159 https://www.encodeproject.org/files/ENCFF739QFL/@@download/ENCFF739QFL.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF062CTK bigWig signal p-value ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF426ZNF, ENCFF909EWL 1389988415 ENCODE Processing Pipeline 3c552ea8396758da9de831d0c1887494 https://www.encodeproject.org/files/ENCFF062CTK/@@download/ENCFF062CTK.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF648HNT bigWig fold change over control ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF628HJJ 1391654622 ENCODE Processing Pipeline 5893ff6a1c74b0f9ec1b2f8d794e0132 https://www.encodeproject.org/files/ENCFF648HNT/@@download/ENCFF648HNT.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF784VDA bigWig signal p-value ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF909EWL 1271737529 ENCODE Processing Pipeline 04e3efcc6207f37294f24eaa314f937c https://www.encodeproject.org/files/ENCFF784VDA/@@download/ENCFF784VDA.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF725RNC bigWig fold change over control ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF113CDP 1241336988 ENCODE Processing Pipeline 202f5fc04c567f2ddd9dafa063ec409f https://www.encodeproject.org/files/ENCFF725RNC/@@download/ENCFF725RNC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF729WNG bigWig fold change over control ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF426ZNF 1401468282 ENCODE Processing Pipeline c3be716ee75ed01308dc6cef3d18175e https://www.encodeproject.org/files/ENCFF729WNG/@@download/ENCFF729WNG.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF829GCG bigBed narrowPeak conservative idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF133MYR 102997 ENCODE Processing Pipeline ff4932457fac4f2850b6ad7836ff8827 https://www.encodeproject.org/files/ENCFF829GCG/@@download/ENCFF829GCG.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF020TLE bed narrowPeak optimal idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF387LNK, ENCFF419RSJ, ENCFF507JOM, ENCFF710KPV 40042 ENCODE Processing Pipeline 1fb55a75769d70107aa0b85a0ebd959d https://www.encodeproject.org/files/ENCFF020TLE/@@download/ENCFF020TLE.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF923FDM bigWig fold change over control ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF909EWL 1240577006 ENCODE Processing Pipeline 4a829ac770ec65c03528e9a23d28b9fe https://www.encodeproject.org/files/ENCFF923FDM/@@download/ENCFF923FDM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF483RAI bigWig fold change over control ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF426ZNF, ENCFF909EWL 1874690934 ENCODE Processing Pipeline 2ef44af52a0eaf5548e19dd0099e9a07 https://www.encodeproject.org/files/ENCFF483RAI/@@download/ENCFF483RAI.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF572NYD bigBed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF387LNK 11252823 ENCODE Processing Pipeline a2b9045249108deca30ad2a4a050ed6f https://www.encodeproject.org/files/ENCFF572NYD/@@download/ENCFF572NYD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF598WYS bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF909EWL 6114803 ENCODE Processing Pipeline cb0a218c5effcdb427fad58af62c1826 https://www.encodeproject.org/files/ENCFF598WYS/@@download/ENCFF598WYS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF560JUV bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF426ZNF, ENCFF909EWL 6989763 ENCODE Processing Pipeline 9ef9e4629012792f033c45dae0872a26 https://www.encodeproject.org/files/ENCFF560JUV/@@download/ENCFF560JUV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF106SAP bigWig fold change over control ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF113CDP, ENCFF628HJJ 1866907586 ENCODE Processing Pipeline 7a2ee3c12c94741066f7b91cb2032c37 https://www.encodeproject.org/files/ENCFF106SAP/@@download/ENCFF106SAP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF387LNK bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF628HJJ 6318359 ENCODE Processing Pipeline 96010f8e00182662f4d19924d5f4a27c https://www.encodeproject.org/files/ENCFF387LNK/@@download/ENCFF387LNK.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF507JOM bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF113CDP 6112983 ENCODE Processing Pipeline 4fdb0d0863615db4925fb0199f12d5bb https://www.encodeproject.org/files/ENCFF507JOM/@@download/ENCFF507JOM.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF710KPV bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF113CDP, ENCFF628HJJ 6988298 ENCODE Processing Pipeline 11f57ce3723a92b03b13f1380b53f838 https://www.encodeproject.org/files/ENCFF710KPV/@@download/ENCFF710KPV.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF180ZAO bigBed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF507JOM 11295257 ENCODE Processing Pipeline d5fead7aac446bf0b6c3faee8f46c861 https://www.encodeproject.org/files/ENCFF180ZAO/@@download/ENCFF180ZAO.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF819KUO bigBed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF710KPV 11151386 ENCODE Processing Pipeline 3a5a42715ca8276a4c5ff85bc6c4d212 https://www.encodeproject.org/files/ENCFF819KUO/@@download/ENCFF819KUO.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF133MYR bed narrowPeak conservative idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF387LNK, ENCFF419RSJ, ENCFF507JOM, ENCFF710KPV 28986 ENCODE Processing Pipeline 5f843734ced2741ee54a94307e5512e5 https://www.encodeproject.org/files/ENCFF133MYR/@@download/ENCFF133MYR.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF173USI bigBed narrowPeak optimal idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF020TLE 120351 ENCODE Processing Pipeline c53627d3635bb8f66b01a66cfaf03342 https://www.encodeproject.org/files/ENCFF173USI/@@download/ENCFF173USI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF165YKQ bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF426ZNF 6318563 ENCODE Processing Pipeline fb54d91fc50abce00f8fb441bd4ffb95 https://www.encodeproject.org/files/ENCFF165YKQ/@@download/ENCFF165YKQ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF191GND bigBed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF560JUV 11110132 ENCODE Processing Pipeline 5d7a79311d4e43722e8572dc7303a89c https://www.encodeproject.org/files/ENCFF191GND/@@download/ENCFF191GND.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF068DDF bigBed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF165YKQ 11243354 ENCODE Processing Pipeline 3f9ee2745d4306ad5b1ad631809d869b https://www.encodeproject.org/files/ENCFF068DDF/@@download/ENCFF068DDF.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF401PCJ bigBed narrowPeak optimal idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF111DCR 120231 ENCODE Processing Pipeline 6db2e8a391d7431df7685ba2907c662d https://www.encodeproject.org/files/ENCFF401PCJ/@@download/ENCFF401PCJ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF613YBD bigBed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF598WYS 11286191 ENCODE Processing Pipeline 859fa5c4127667f30393e0e0faf8f69f https://www.encodeproject.org/files/ENCFF613YBD/@@download/ENCFF613YBD.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF216VDN bed narrowPeak conservative idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF165YKQ, ENCFF560JUV, ENCFF598WYS 28350 ENCODE Processing Pipeline 62eabe96ac8c71d919b3035dbab70bf1 https://www.encodeproject.org/files/ENCFF216VDN/@@download/ENCFF216VDN.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF111DCR bed narrowPeak optimal idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF165YKQ, ENCFF560JUV, ENCFF598WYS 40852 ENCODE Processing Pipeline c6f7bcf5e412e442b64ab4a517fed157 https://www.encodeproject.org/files/ENCFF111DCR/@@download/ENCFF111DCR.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF934PAW bigBed narrowPeak conservative idr thresholded peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF216VDN 101053 ENCODE Processing Pipeline 4fb9873ba23c25e5949c6d7e35bfdffb https://www.encodeproject.org/files/ENCFF934PAW/@@download/ENCFF934PAW.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF066WCC fastq reads ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF711PUH 3101278876 Michael Snyder, Stanford db98f2144a7e12edf4a18441c3c9e705 SRA:SRR6213077 https://www.encodeproject.org/files/ENCFF066WCC/@@download/ENCFF066WCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF869MHB fastq reads ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF859HOC 3034655713 Michael Snyder, Stanford 852c2d15b1110278ce813ce7691ba5a2 SRA:SRR6213078 https://www.encodeproject.org/files/ENCFF869MHB/@@download/ENCFF869MHB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF859HOC fastq reads ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF869MHB 2974888842 Michael Snyder, Stanford 74f3f64719fb239ecf3c5725341b815d SRA:SRR6213078 https://www.encodeproject.org/files/ENCFF859HOC/@@download/ENCFF859HOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF711PUH fastq reads ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF066WCC 3040462443 Michael Snyder, Stanford b3b6889828106c07fb1516a6a416652c SRA:SRR6213077 https://www.encodeproject.org/files/ENCFF711PUH/@@download/ENCFF711PUH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF871ABV bam unfiltered alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF859HOC, ENCFF869MHB 6108948552 ENCODE Processing Pipeline 97da702be3517b44d649c59658424fcb https://www.encodeproject.org/files/ENCFF871ABV/@@download/ENCFF871ABV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF778FZI bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF859HOC, ENCFF869MHB 5222445580 ENCODE Processing Pipeline e203c2eb90759d2b3a2aebb876c7ca93 https://www.encodeproject.org/files/ENCFF778FZI/@@download/ENCFF778FZI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF870PRQ bam unfiltered alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF066WCC, ENCFF711PUH, ENCFF807MUK 6211415040 ENCODE Processing Pipeline 357640ce5cb73c976a976fa2548a2ea8 https://www.encodeproject.org/files/ENCFF870PRQ/@@download/ENCFF870PRQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF161TEI bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF066WCC, ENCFF711PUH, ENCFF807MUK 5225287371 ENCODE Processing Pipeline 570ce5907ff1880743759abd9b5f5077 https://www.encodeproject.org/files/ENCFF161TEI/@@download/ENCFF161TEI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF019OLJ bam unfiltered alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF859HOC, ENCFF869MHB 6117521629 ENCODE Processing Pipeline a2380f7327a26ea353596a8fe34a4531 https://www.encodeproject.org/files/ENCFF019OLJ/@@download/ENCFF019OLJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF384OOV bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF859HOC, ENCFF869MHB 5224585619 ENCODE Processing Pipeline b210a1f3d798e4fbff71eb201dbb8ba1 https://www.encodeproject.org/files/ENCFF384OOV/@@download/ENCFF384OOV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF312TES bam unfiltered alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF066WCC, ENCFF643CGH, ENCFF711PUH 6219118766 ENCODE Processing Pipeline b65712c194b552f31a4480cf0823cf01 https://www.encodeproject.org/files/ENCFF312TES/@@download/ENCFF312TES.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF937TCA bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF066WCC, ENCFF643CGH, ENCFF711PUH 5228159085 ENCODE Processing Pipeline b23f1263f70e06e68df2f1dfe509399f https://www.encodeproject.org/files/ENCFF937TCA/@@download/ENCFF937TCA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF237MOO bigWig signal p-value ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF384OOV, ENCFF937TCA 2014454157 ENCODE Processing Pipeline f0437132d1e2656f364fd0ec4c53cba1 https://www.encodeproject.org/files/ENCFF237MOO/@@download/ENCFF237MOO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF760ADU bigWig signal p-value ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF937TCA 1437034772 ENCODE Processing Pipeline 2d798f94783749b375be842dc9b5e3ac https://www.encodeproject.org/files/ENCFF760ADU/@@download/ENCFF760ADU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF384OQH bigWig fold change over control ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF937TCA 1503372953 ENCODE Processing Pipeline 0edca428adb25aa5053868d9c3c5b150 https://www.encodeproject.org/files/ENCFF384OQH/@@download/ENCFF384OQH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF992NVH bigWig fold change over control ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF384OOV 1479730278 ENCODE Processing Pipeline 2d3893f8b2f1ae3c670554adc10959df https://www.encodeproject.org/files/ENCFF992NVH/@@download/ENCFF992NVH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF175JIT bigWig signal p-value ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF384OOV 1186498281 ENCODE Processing Pipeline 7bd384e3563c49a224e0cd7bc0c18bee https://www.encodeproject.org/files/ENCFF175JIT/@@download/ENCFF175JIT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF818AGB bigWig fold change over control ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF384OOV, ENCFF937TCA 2083849743 ENCODE Processing Pipeline bd125b57347614e25c76170364493ed4 https://www.encodeproject.org/files/ENCFF818AGB/@@download/ENCFF818AGB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF766HPR bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF384OOV, ENCFF937TCA 7089823 ENCODE Processing Pipeline ee4bf3a2bf5082d5b02722b41a1464d9 https://www.encodeproject.org/files/ENCFF766HPR/@@download/ENCFF766HPR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF879TTC bigWig signal p-value ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF778FZI 1295215863 ENCODE Processing Pipeline 0d07ce8b216c9dc50b8b1361763e1e00 https://www.encodeproject.org/files/ENCFF879TTC/@@download/ENCFF879TTC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF233DOZ bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF937TCA 6480583 ENCODE Processing Pipeline 99bcbd6e72d8ca9f3f50307bbbb5a020 https://www.encodeproject.org/files/ENCFF233DOZ/@@download/ENCFF233DOZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF189WEU bigBed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF766HPR 10899992 ENCODE Processing Pipeline 83b87c982aae64e27900ffb4811d277e https://www.encodeproject.org/files/ENCFF189WEU/@@download/ENCFF189WEU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF381CDR bed narrowPeak conservative idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF233DOZ, ENCFF419RSJ, ENCFF564AIW, ENCFF766HPR 19368 ENCODE Processing Pipeline 6b54d31a74ad615df047645faaf0af32 https://www.encodeproject.org/files/ENCFF381CDR/@@download/ENCFF381CDR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF092BMJ bigBed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF564AIW 11105205 ENCODE Processing Pipeline 3811f71982b77d2197f292e176f541d7 https://www.encodeproject.org/files/ENCFF092BMJ/@@download/ENCFF092BMJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF184EIK bigBed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF233DOZ 11182378 ENCODE Processing Pipeline 5c2cb74686e0d9867eeca9ce6ff16db3 https://www.encodeproject.org/files/ENCFF184EIK/@@download/ENCFF184EIK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF126IZP bed narrowPeak optimal idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF233DOZ, ENCFF419RSJ, ENCFF564AIW, ENCFF766HPR 31867 ENCODE Processing Pipeline bc1ef98b13ff3b518dac30bb8783939e https://www.encodeproject.org/files/ENCFF126IZP/@@download/ENCFF126IZP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF564AIW bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF384OOV 6590730 ENCODE Processing Pipeline 7d19640c4e84e8c16fb3865f3e623c2f https://www.encodeproject.org/files/ENCFF564AIW/@@download/ENCFF564AIW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF087JEO bigBed narrowPeak conservative idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF381CDR 85132 ENCODE Processing Pipeline e0a5b657a1948b467e0097552b8c8fe0 https://www.encodeproject.org/files/ENCFF087JEO/@@download/ENCFF087JEO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF155MOG bigBed narrowPeak optimal idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF126IZP 104580 ENCODE Processing Pipeline 0c585e30fbbedea2dce3b63a5d01e053 https://www.encodeproject.org/files/ENCFF155MOG/@@download/ENCFF155MOG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF687STT bigWig signal p-value ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF161TEI 1498993042 ENCODE Processing Pipeline 41bf07123cf93197d79573d3cf23d9f3 https://www.encodeproject.org/files/ENCFF687STT/@@download/ENCFF687STT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF056KHM bigWig signal p-value ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF161TEI, ENCFF778FZI 2005635315 ENCODE Processing Pipeline c483e26bf1571a24a75cbd64a0220d66 https://www.encodeproject.org/files/ENCFF056KHM/@@download/ENCFF056KHM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF033XNG bigWig fold change over control ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF778FZI 1478792950 ENCODE Processing Pipeline 0b16045b5c8214f7fcc9011b4e025ebb https://www.encodeproject.org/files/ENCFF033XNG/@@download/ENCFF033XNG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF112QCV bigWig fold change over control ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF161TEI 1492158968 ENCODE Processing Pipeline 3161ea84422ad090fdb243c156a05ef0 https://www.encodeproject.org/files/ENCFF112QCV/@@download/ENCFF112QCV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF468GYP bigWig fold change over control ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF161TEI, ENCFF778FZI 2070795951 ENCODE Processing Pipeline 02d2dcd762314da5a93b6d6163bf2238 https://www.encodeproject.org/files/ENCFF468GYP/@@download/ENCFF468GYP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF265MBT bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF778FZI 6589101 ENCODE Processing Pipeline 058dcd2df13899cc5555d66441c9262d https://www.encodeproject.org/files/ENCFF265MBT/@@download/ENCFF265MBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF073SON bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF161TEI 6480275 ENCODE Processing Pipeline 9185891cd09a85db98afb135c5c5b2b5 https://www.encodeproject.org/files/ENCFF073SON/@@download/ENCFF073SON.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF909SWF bigBed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF265MBT 11090435 ENCODE Processing Pipeline 34590ede2b31443ca99dd447c1a3c3c6 https://www.encodeproject.org/files/ENCFF909SWF/@@download/ENCFF909SWF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF887FHK bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF161TEI, ENCFF778FZI 7072710 ENCODE Processing Pipeline af0a45d7017107d202bf4dded1630d53 https://www.encodeproject.org/files/ENCFF887FHK/@@download/ENCFF887FHK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF836RHJ bigBed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF887FHK 10871559 ENCODE Processing Pipeline 6f73fc11d0dea69e2805170b69d6cc9e https://www.encodeproject.org/files/ENCFF836RHJ/@@download/ENCFF836RHJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF714UAI bed narrowPeak conservative idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF073SON, ENCFF265MBT, ENCFF887FHK 18805 ENCODE Processing Pipeline 0aea6e718398d3d1dc8473dec1888bf4 https://www.encodeproject.org/files/ENCFF714UAI/@@download/ENCFF714UAI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF652ETM bigBed narrowPeak conservative idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF714UAI 83795 ENCODE Processing Pipeline 0988d24a35985c6ac0f9a516a0a997bb https://www.encodeproject.org/files/ENCFF652ETM/@@download/ENCFF652ETM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF098IXI bigBed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF073SON 11176647 ENCODE Processing Pipeline 9a8554289df00f86486486ae929d6bf9 https://www.encodeproject.org/files/ENCFF098IXI/@@download/ENCFF098IXI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF300CSG bed narrowPeak optimal idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF073SON, ENCFF265MBT, ENCFF887FHK 32353 ENCODE Processing Pipeline 2601516fafa5439256a22d5f16719c57 https://www.encodeproject.org/files/ENCFF300CSG/@@download/ENCFF300CSG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF997HLH bigBed narrowPeak optimal idr thresholded peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF300CSG 103961 ENCODE Processing Pipeline d76330037ce818c3eed7039abe4bf299 https://www.encodeproject.org/files/ENCFF997HLH/@@download/ENCFF997HLH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF853ZLC fastq reads ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF952WBI 2786467540 Michael Snyder, Stanford 60893d482c6d7fb70f89b84ff7eafb01 SRA:SRR5111931 https://www.encodeproject.org/files/ENCFF853ZLC/@@download/ENCFF853ZLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF919KAD fastq reads ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF853FHN 2604577629 Michael Snyder, Stanford 48184308c97052305dddd5d0acd25bf2 SRA:SRR5111932 https://www.encodeproject.org/files/ENCFF919KAD/@@download/ENCFF919KAD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF952WBI fastq reads ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF853ZLC 2848326580 Michael Snyder, Stanford 6effd4db6762a8970474711a7f7ef9d2 SRA:SRR5111931 https://www.encodeproject.org/files/ENCFF952WBI/@@download/ENCFF952WBI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF853FHN fastq reads ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF919KAD 2659920229 Michael Snyder, Stanford 44caa181ce8372f10b0c608111187378 SRA:SRR5111932 https://www.encodeproject.org/files/ENCFF853FHN/@@download/ENCFF853FHN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF548KWC bam unfiltered alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF853FHN, ENCFF919KAD 5825433273 ENCODE Processing Pipeline 35fc1362598fcc201b5dec89eb84fa8a https://www.encodeproject.org/files/ENCFF548KWC/@@download/ENCFF548KWC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF236KFT bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF853FHN, ENCFF919KAD 4883094217 ENCODE Processing Pipeline 9d4d7d61873a1f59ecf8302513ffac4c https://www.encodeproject.org/files/ENCFF236KFT/@@download/ENCFF236KFT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF971BTB bam unfiltered alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF853FHN, ENCFF919KAD 5830191962 ENCODE Processing Pipeline 2a7ee7faabe3e604ceb32bcea92c51f6 https://www.encodeproject.org/files/ENCFF971BTB/@@download/ENCFF971BTB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF563CEZ bam unfiltered alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF853ZLC, ENCFF952WBI 6218707553 ENCODE Processing Pipeline 8911a1b3effb55660baab14b5481dfd6 https://www.encodeproject.org/files/ENCFF563CEZ/@@download/ENCFF563CEZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF699RNG bam unfiltered alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF853ZLC, ENCFF952WBI 6224067000 ENCODE Processing Pipeline 430691caced17b446fdfe49a300d1316 https://www.encodeproject.org/files/ENCFF699RNG/@@download/ENCFF699RNG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF892ULP bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF853FHN, ENCFF919KAD 4884267911 ENCODE Processing Pipeline d25d53b9d1904472f234c215a946aa7f https://www.encodeproject.org/files/ENCFF892ULP/@@download/ENCFF892ULP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF764AKW bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF853ZLC, ENCFF952WBI 5229466920 ENCODE Processing Pipeline 8415e0a549a85a9bbfd64c53a9c5aa4f https://www.encodeproject.org/files/ENCFF764AKW/@@download/ENCFF764AKW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF369ANP bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF853ZLC, ENCFF952WBI 5230914575 ENCODE Processing Pipeline 373d0be3d68eebe106ca61f53a5ba7cb https://www.encodeproject.org/files/ENCFF369ANP/@@download/ENCFF369ANP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF098MIM bigWig signal p-value ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF764AKW 1322621321 ENCODE Processing Pipeline 2d31327bfb09b91ebcc4e770bd5d0b72 https://www.encodeproject.org/files/ENCFF098MIM/@@download/ENCFF098MIM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF893MXY bigWig signal p-value ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF236KFT 1256163425 ENCODE Processing Pipeline bb626a604ae2c75a722f08e15e39208a https://www.encodeproject.org/files/ENCFF893MXY/@@download/ENCFF893MXY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF418EDB bigWig signal p-value ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF236KFT, ENCFF764AKW 1613132593 ENCODE Processing Pipeline bcb17491afb2e64d0e02b1934ab42deb https://www.encodeproject.org/files/ENCFF418EDB/@@download/ENCFF418EDB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF866JJZ bigWig fold change over control ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF236KFT 1337044678 ENCODE Processing Pipeline 9de8cd987b8554e8443b4556268d6ff9 https://www.encodeproject.org/files/ENCFF866JJZ/@@download/ENCFF866JJZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF961BOO bigWig fold change over control ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF764AKW 1422242286 ENCODE Processing Pipeline 9d0243bdcfcc88940f0120775163ed84 https://www.encodeproject.org/files/ENCFF961BOO/@@download/ENCFF961BOO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF672MRZ bigWig fold change over control ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF236KFT, ENCFF764AKW 1941536703 ENCODE Processing Pipeline 49297381bb6c65ce4f8c1d89123ac393 https://www.encodeproject.org/files/ENCFF672MRZ/@@download/ENCFF672MRZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF247YJV bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF236KFT, ENCFF764AKW 7282445 ENCODE Processing Pipeline 643941ae596d05d76064d0a541a51b07 https://www.encodeproject.org/files/ENCFF247YJV/@@download/ENCFF247YJV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF787DIF bigBed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF909BKU 13345587 ENCODE Processing Pipeline d2a94e796a159eea91af49bceb65ef95 https://www.encodeproject.org/files/ENCFF787DIF/@@download/ENCFF787DIF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF204QGM bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF764AKW 7024442 ENCODE Processing Pipeline 2aec3e27a8688056ff352ca8a9b2be99 https://www.encodeproject.org/files/ENCFF204QGM/@@download/ENCFF204QGM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF814JYF bigBed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF204QGM 13338224 ENCODE Processing Pipeline 0d0ae5bc6a60a1863b164291f7bb03ae https://www.encodeproject.org/files/ENCFF814JYF/@@download/ENCFF814JYF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF909BKU bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF236KFT 6972294 ENCODE Processing Pipeline 93b1935cdd8ee54a5ad25aab05ca9f37 https://www.encodeproject.org/files/ENCFF909BKU/@@download/ENCFF909BKU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF288FJD bed narrowPeak conservative idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF204QGM, ENCFF247YJV, ENCFF909BKU 375539 ENCODE Processing Pipeline 4badfc4cfe386ad6ba127bab80446ff8 https://www.encodeproject.org/files/ENCFF288FJD/@@download/ENCFF288FJD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF245LAO bigBed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF247YJV 13233183 ENCODE Processing Pipeline 534c431e131c9e09be583166811b99fa https://www.encodeproject.org/files/ENCFF245LAO/@@download/ENCFF245LAO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF563QQH bed narrowPeak optimal idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF204QGM, ENCFF247YJV, ENCFF909BKU 460690 ENCODE Processing Pipeline 487d4966e3ad7861ef9a06db934dac50 https://www.encodeproject.org/files/ENCFF563QQH/@@download/ENCFF563QQH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF920JNW bigBed narrowPeak optimal idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF563QQH 923139 ENCODE Processing Pipeline 26a255822b4a88cd57401c8f9c4add47 https://www.encodeproject.org/files/ENCFF920JNW/@@download/ENCFF920JNW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF373MIO bigBed narrowPeak conservative idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF288FJD 785737 ENCODE Processing Pipeline 747ce981bcdbdd3cffc602ae6f4fabd7 https://www.encodeproject.org/files/ENCFF373MIO/@@download/ENCFF373MIO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF366GVQ bigWig signal p-value ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF369ANP 1221583543 ENCODE Processing Pipeline f76158a2d750e28ec86f611e329f887a https://www.encodeproject.org/files/ENCFF366GVQ/@@download/ENCFF366GVQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF449POV bigWig signal p-value ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892ULP 1181978947 ENCODE Processing Pipeline ef36fea39de4526e8a4f968c5637c051 https://www.encodeproject.org/files/ENCFF449POV/@@download/ENCFF449POV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF846POH bigWig signal p-value ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF369ANP, ENCFF892ULP 1474023761 ENCODE Processing Pipeline 76eaac82f984be8d286c098edc52de63 https://www.encodeproject.org/files/ENCFF846POH/@@download/ENCFF846POH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF962ADL bigWig fold change over control ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF369ANP 1425368129 ENCODE Processing Pipeline 05e7297a927de20d875f6f484900e174 https://www.encodeproject.org/files/ENCFF962ADL/@@download/ENCFF962ADL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF648ORF bigWig fold change over control ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892ULP 1331107352 ENCODE Processing Pipeline 0a988d8081e0fd8d3e4a12a74c0b8532 https://www.encodeproject.org/files/ENCFF648ORF/@@download/ENCFF648ORF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF644XAH bigWig fold change over control ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF369ANP, ENCFF892ULP 1941569052 ENCODE Processing Pipeline 4a264b37aac0dcd771e4c1b5f42b0665 https://www.encodeproject.org/files/ENCFF644XAH/@@download/ENCFF644XAH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF314PRY bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF369ANP 6973245 ENCODE Processing Pipeline 2829f08bc37d71ce18effe47dd101408 https://www.encodeproject.org/files/ENCFF314PRY/@@download/ENCFF314PRY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF343ZCE bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF369ANP, ENCFF892ULP 7275826 ENCODE Processing Pipeline bd5f631387cdb2167d24282f0cf7b63e https://www.encodeproject.org/files/ENCFF343ZCE/@@download/ENCFF343ZCE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF186ZZC bigBed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF314PRY 13354040 ENCODE Processing Pipeline a7dd8579f8dfb27bf0536444182bcf15 https://www.encodeproject.org/files/ENCFF186ZZC/@@download/ENCFF186ZZC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF339XKU bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892ULP 6888699 ENCODE Processing Pipeline bba9b896fbca71c824001bef69f58691 https://www.encodeproject.org/files/ENCFF339XKU/@@download/ENCFF339XKU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF458OLZ bigBed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF339XKU 13353038 ENCODE Processing Pipeline 3409c18db9a7c3115dddbe2a27d192d2 https://www.encodeproject.org/files/ENCFF458OLZ/@@download/ENCFF458OLZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF556QQJ bigBed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF343ZCE 13242621 ENCODE Processing Pipeline 876b8b3b070df0d459362f3999721f2d https://www.encodeproject.org/files/ENCFF556QQJ/@@download/ENCFF556QQJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF551PUN bed narrowPeak conservative idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF314PRY, ENCFF339XKU, ENCFF343ZCE, ENCFF419RSJ 377132 ENCODE Processing Pipeline 6b337f88a58d8f7b683bd9be73b64ac3 https://www.encodeproject.org/files/ENCFF551PUN/@@download/ENCFF551PUN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF709IWF bigBed narrowPeak conservative idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF551PUN 786708 ENCODE Processing Pipeline 9da865d523b7eceb71c7045252b506c7 https://www.encodeproject.org/files/ENCFF709IWF/@@download/ENCFF709IWF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF631BJV bed narrowPeak optimal idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF314PRY, ENCFF339XKU, ENCFF343ZCE, ENCFF419RSJ 461841 ENCODE Processing Pipeline 12c3764ef0a46bb44d6e22e526e396a7 https://www.encodeproject.org/files/ENCFF631BJV/@@download/ENCFF631BJV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF016FJD bigBed narrowPeak optimal idr thresholded peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF631BJV 924859 ENCODE Processing Pipeline ab3ee070a154d1ab3cf8c4587c0a25e9 https://www.encodeproject.org/files/ENCFF016FJD/@@download/ENCFF016FJD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF599YZI fastq reads ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1391716431 Richard Myers, HAIB b6fe0b02756b86dae7ba6e7aa2a0b3e5 SRA:SRR5331152 https://www.encodeproject.org/files/ENCFF599YZI/@@download/ENCFF599YZI.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF767XIJ fastq reads ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1170413894 Richard Myers, HAIB eeb12868244db6f337a792749353114e SRA:SRR5331153 https://www.encodeproject.org/files/ENCFF767XIJ/@@download/ENCFF767XIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF963EMV bam unfiltered alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF767XIJ 1284594318 ENCODE Processing Pipeline df5acc4107ff05d7a87708abddb726f7 https://www.encodeproject.org/files/ENCFF963EMV/@@download/ENCFF963EMV.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF204ZMI bam unfiltered alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF767XIJ, ENCFF807MUK 1281616199 ENCODE Processing Pipeline 17f31a2efb5e11c9f412bdfda25905b6 https://www.encodeproject.org/files/ENCFF204ZMI/@@download/ENCFF204ZMI.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF197CJL bam unfiltered alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF599YZI, ENCFF807MUK 1518634697 ENCODE Processing Pipeline 532b3d6fb2e67afdfe1675bf26ecaeb0 https://www.encodeproject.org/files/ENCFF197CJL/@@download/ENCFF197CJL.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF152VYM bam unfiltered alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF599YZI, ENCFF643CGH 1523286622 ENCODE Processing Pipeline ada9bcfb2826cd22bdb3d7be61cb0d4f https://www.encodeproject.org/files/ENCFF152VYM/@@download/ENCFF152VYM.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF759GZJ bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF767XIJ, ENCFF807MUK 1024674526 ENCODE Processing Pipeline 5811f41bae2721ebf2a981f911c98eda https://www.encodeproject.org/files/ENCFF759GZJ/@@download/ENCFF759GZJ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF787VIZ bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF767XIJ 1025266255 ENCODE Processing Pipeline 00c7fa92090643862d2ac878feb4c62c https://www.encodeproject.org/files/ENCFF787VIZ/@@download/ENCFF787VIZ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF418WTW bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF599YZI, ENCFF807MUK 1172580753 ENCODE Processing Pipeline 576219c7da1f7aed5a99cc7c27f57f38 https://www.encodeproject.org/files/ENCFF418WTW/@@download/ENCFF418WTW.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF891QAW bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF599YZI, ENCFF643CGH 1173554228 ENCODE Processing Pipeline 452f41223b2d707ef8807f2b466f5120 https://www.encodeproject.org/files/ENCFF891QAW/@@download/ENCFF891QAW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF414IUM bigWig signal p-value ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF891QAW 505612614 ENCODE Processing Pipeline 956beef2fcb0b3153fb588601291a64e https://www.encodeproject.org/files/ENCFF414IUM/@@download/ENCFF414IUM.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF447CDN bigWig signal p-value ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF787VIZ 480083206 ENCODE Processing Pipeline feb1f4929ddd059591a83cff67c57b2d https://www.encodeproject.org/files/ENCFF447CDN/@@download/ENCFF447CDN.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF923EBX bigWig signal p-value ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF787VIZ, ENCFF891QAW 668619739 ENCODE Processing Pipeline 939896a81b3320eb784326abfc996c86 https://www.encodeproject.org/files/ENCFF923EBX/@@download/ENCFF923EBX.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875SLR bigWig fold change over control ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF787VIZ 427758214 ENCODE Processing Pipeline c52ef36b9393870e76fa159538597380 https://www.encodeproject.org/files/ENCFF875SLR/@@download/ENCFF875SLR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF577XXO bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF787VIZ 5475834 ENCODE Processing Pipeline d35f4372f8eaf7f8ac2063d70a1cfbc0 https://www.encodeproject.org/files/ENCFF577XXO/@@download/ENCFF577XXO.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF605DZE bigWig fold change over control ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF787VIZ, ENCFF891QAW 759501544 ENCODE Processing Pipeline 1bf190be9f124be8c247382c8c0965f4 https://www.encodeproject.org/files/ENCFF605DZE/@@download/ENCFF605DZE.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261MQX bigWig fold change over control ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF891QAW 456932904 ENCODE Processing Pipeline 5cf8b0f43aeed7e7e32cab7b7aa0263b https://www.encodeproject.org/files/ENCFF261MQX/@@download/ENCFF261MQX.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF748EYO bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF891QAW 4892696 ENCODE Processing Pipeline 6534c25fc3c9feae1d93faea96ad02d2 https://www.encodeproject.org/files/ENCFF748EYO/@@download/ENCFF748EYO.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF922WJV bigBed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF577XXO 13189404 ENCODE Processing Pipeline 81905dc517c39b1027b7b88ab3118a8c https://www.encodeproject.org/files/ENCFF922WJV/@@download/ENCFF922WJV.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF917REK bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF787VIZ, ENCFF891QAW 4314526 ENCODE Processing Pipeline 077211ff4fe9b2a4b94aa115fc5a6dc0 https://www.encodeproject.org/files/ENCFF917REK/@@download/ENCFF917REK.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF772SZC bigBed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF917REK 9331471 ENCODE Processing Pipeline 59ea1d9ef2acaf933472ac3710d9e254 https://www.encodeproject.org/files/ENCFF772SZC/@@download/ENCFF772SZC.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF441HSQ bigBed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF748EYO 10990541 ENCODE Processing Pipeline af08a20ed6a1812d187a749d670252e9 https://www.encodeproject.org/files/ENCFF441HSQ/@@download/ENCFF441HSQ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF867MGI bed narrowPeak conservative idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF577XXO, ENCFF748EYO, ENCFF917REK 226677 ENCODE Processing Pipeline f6710de08c6259c5eb008bba44a496a5 https://www.encodeproject.org/files/ENCFF867MGI/@@download/ENCFF867MGI.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF371TDC bed narrowPeak optimal idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF577XXO, ENCFF748EYO, ENCFF917REK 232044 ENCODE Processing Pipeline 2593cc647a9150c2cfd33ea98478815e https://www.encodeproject.org/files/ENCFF371TDC/@@download/ENCFF371TDC.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF453KWC bigBed narrowPeak optimal idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF371TDC 440645 ENCODE Processing Pipeline 1401d8c91d1a0dfe354ef65576786e78 https://www.encodeproject.org/files/ENCFF453KWC/@@download/ENCFF453KWC.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099BVR bigBed narrowPeak conservative idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF867MGI 433077 ENCODE Processing Pipeline 11b6c056cf34f8d2cf805958f68ac78b https://www.encodeproject.org/files/ENCFF099BVR/@@download/ENCFF099BVR.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF561FNL bigWig signal p-value ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF759GZJ 1140188894 ENCODE Processing Pipeline c1d9019830fd580499ec331843022049 https://www.encodeproject.org/files/ENCFF561FNL/@@download/ENCFF561FNL.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF328XTC bigWig signal p-value ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF418WTW 1318744632 ENCODE Processing Pipeline e03b16135ae3881f2e777be1e12e8c9d https://www.encodeproject.org/files/ENCFF328XTC/@@download/ENCFF328XTC.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF301GLG bigWig signal p-value ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF418WTW, ENCFF759GZJ 1389609242 ENCODE Processing Pipeline 6e827a17d2d8c0b68e5be1ecd2f7cfa7 https://www.encodeproject.org/files/ENCFF301GLG/@@download/ENCFF301GLG.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF940NXY bigWig fold change over control ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF759GZJ 820146571 ENCODE Processing Pipeline b41064e6e799ccbd6130de0e53650724 https://www.encodeproject.org/files/ENCFF940NXY/@@download/ENCFF940NXY.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530STV bigWig fold change over control ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF418WTW 940701797 ENCODE Processing Pipeline 5996c53bdeaf383beb672de6ea990c8e https://www.encodeproject.org/files/ENCFF530STV/@@download/ENCFF530STV.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF404RPV bigWig fold change over control ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF418WTW, ENCFF759GZJ 1315482606 ENCODE Processing Pipeline 12f554e8e4fd6847978e2472388f7023 https://www.encodeproject.org/files/ENCFF404RPV/@@download/ENCFF404RPV.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF019DNW bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF418WTW 6061843 ENCODE Processing Pipeline 309b53131eeb453b455e2c147d4b2bb8 https://www.encodeproject.org/files/ENCFF019DNW/@@download/ENCFF019DNW.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF158LYC bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF759GZJ 6370153 ENCODE Processing Pipeline 1757a9ae4dc34674ee942e94a6b71c98 https://www.encodeproject.org/files/ENCFF158LYC/@@download/ENCFF158LYC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF340YNG bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF418WTW, ENCFF759GZJ 6754738 ENCODE Processing Pipeline 0e25d041eab6f377d8da6faea0236514 https://www.encodeproject.org/files/ENCFF340YNG/@@download/ENCFF340YNG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF110SJQ bigBed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF158LYC 13279019 ENCODE Processing Pipeline 131cbce9db64afa84ab79b24eb3f96ee https://www.encodeproject.org/files/ENCFF110SJQ/@@download/ENCFF110SJQ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF224GBC bigBed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF019DNW 13553635 ENCODE Processing Pipeline 558f15b4f9cd69836f199ec8db5cf53a https://www.encodeproject.org/files/ENCFF224GBC/@@download/ENCFF224GBC.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF638TSE bigBed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340YNG 13463152 ENCODE Processing Pipeline 2f4f4875074d9c22eaae3fe39ff1237b https://www.encodeproject.org/files/ENCFF638TSE/@@download/ENCFF638TSE.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF619RQX bed narrowPeak conservative idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF019DNW, ENCFF158LYC, ENCFF340YNG 227224 ENCODE Processing Pipeline a1909d17f22cde56a726fa40d680b04e https://www.encodeproject.org/files/ENCFF619RQX/@@download/ENCFF619RQX.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF844JPP bigBed narrowPeak conservative idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF619RQX 445756 ENCODE Processing Pipeline 4a74495a56a17e49437faf4f7dc3074a https://www.encodeproject.org/files/ENCFF844JPP/@@download/ENCFF844JPP.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF584DZS bed narrowPeak optimal idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF019DNW, ENCFF158LYC, ENCFF340YNG 238203 ENCODE Processing Pipeline 1d78b901b51628a84babadd365d93c9c https://www.encodeproject.org/files/ENCFF584DZS/@@download/ENCFF584DZS.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF759MGV bigBed narrowPeak optimal idr thresholded peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF584DZS 460410 ENCODE Processing Pipeline 8ce8baf2576fada11cc43f5ce4038004 https://www.encodeproject.org/files/ENCFF759MGV/@@download/ENCFF759MGV.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF278TLH fastq reads ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF960KMN 2879573523 Michael Snyder, Stanford b65db17f9c738966fcc4490316ce9088 SRA:SRR6213644 https://www.encodeproject.org/files/ENCFF278TLH/@@download/ENCFF278TLH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released antibody characterized with exemption ENCFF502XNK fastq reads ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF363RMP 3335420001 Michael Snyder, Stanford 921cd11a03198829e9ca8797bd223da6 SRA:SRR6213643 https://www.encodeproject.org/files/ENCFF502XNK/@@download/ENCFF502XNK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released antibody characterized with exemption ENCFF960KMN fastq reads ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF278TLH 2814849477 Michael Snyder, Stanford 4948001cdb430422c822f2b5d27982d6 SRA:SRR6213644 https://www.encodeproject.org/files/ENCFF960KMN/@@download/ENCFF960KMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released antibody characterized with exemption ENCFF363RMP fastq reads ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF502XNK 3249498973 Michael Snyder, Stanford 45fa64d40f5efced4e87c454f8ce1729 SRA:SRR6213643 https://www.encodeproject.org/files/ENCFF363RMP/@@download/ENCFF363RMP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released antibody characterized with exemption ENCFF459NAB bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF363RMP, ENCFF502XNK, ENCFF807MUK 5896034637 ENCODE Processing Pipeline 5d1559c8269cfa83b047fc294fab9b08 https://www.encodeproject.org/files/ENCFF459NAB/@@download/ENCFF459NAB.bam hg19 released antibody characterized with exemption ENCFF608GXH bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF278TLH, ENCFF807MUK, ENCFF960KMN 5201712847 ENCODE Processing Pipeline a59b3d985a1cc4143ef129b10a143f25 https://www.encodeproject.org/files/ENCFF608GXH/@@download/ENCFF608GXH.bam hg19 released antibody characterized with exemption ENCFF574PXB bam unfiltered alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF363RMP, ENCFF502XNK, ENCFF807MUK 7190092623 ENCODE Processing Pipeline 61366075ab324693768c00403031630d https://www.encodeproject.org/files/ENCFF574PXB/@@download/ENCFF574PXB.bam hg19 released antibody characterized with exemption ENCFF500FSF bam unfiltered alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF278TLH, ENCFF807MUK, ENCFF960KMN 6245494411 ENCODE Processing Pipeline 0fda72185a235b476cb9e5604d2a8e21 https://www.encodeproject.org/files/ENCFF500FSF/@@download/ENCFF500FSF.bam hg19 released antibody characterized with exemption ENCFF654CBN bam unfiltered alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF278TLH, ENCFF643CGH, ENCFF960KMN 6257190782 ENCODE Processing Pipeline 73b7f50b1848dc8e2900c4a22ce05cb7 https://www.encodeproject.org/files/ENCFF654CBN/@@download/ENCFF654CBN.bam GRCh38 released antibody characterized with exemption ENCFF833WHB bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF278TLH, ENCFF643CGH, ENCFF960KMN 5217276696 ENCODE Processing Pipeline 97fc6aee205b39573917384111468052 https://www.encodeproject.org/files/ENCFF833WHB/@@download/ENCFF833WHB.bam GRCh38 released antibody characterized with exemption ENCFF139HSZ bam unfiltered alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF363RMP, ENCFF502XNK, ENCFF643CGH 7203526241 ENCODE Processing Pipeline 658cf24ffae71c8dc146ae852419feb8 https://www.encodeproject.org/files/ENCFF139HSZ/@@download/ENCFF139HSZ.bam GRCh38 released antibody characterized with exemption ENCFF960PYI bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF363RMP, ENCFF502XNK, ENCFF643CGH 5914076970 ENCODE Processing Pipeline a0944252b3d3ada68bf574114cdb5098 https://www.encodeproject.org/files/ENCFF960PYI/@@download/ENCFF960PYI.bam GRCh38 released antibody characterized with exemption ENCFF301QRF bigWig signal p-value ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF190EPQ, ENCFF960PYI 1437990347 ENCODE Processing Pipeline cbb5c7d2147f282a9a9ae197f9873834 https://www.encodeproject.org/files/ENCFF301QRF/@@download/ENCFF301QRF.bigWig GRCh38 released antibody characterized with exemption ENCFF464WQQ bigWig signal p-value ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF833WHB, ENCFF950AXC 1070219076 ENCODE Processing Pipeline 48db84e2e22ec3d239fb6c7a0a2352a1 https://www.encodeproject.org/files/ENCFF464WQQ/@@download/ENCFF464WQQ.bigWig GRCh38 released antibody characterized with exemption ENCFF684FDI bigWig signal p-value ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF190EPQ, ENCFF833WHB, ENCFF950AXC, ENCFF960PYI 2192296773 ENCODE Processing Pipeline 289895491866c53b7830c6649817c1c2 https://www.encodeproject.org/files/ENCFF684FDI/@@download/ENCFF684FDI.bigWig GRCh38 released antibody characterized with exemption ENCFF815TNX bigWig fold change over control ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF190EPQ, ENCFF960PYI 1345735336 ENCODE Processing Pipeline b74d3be1fabb9a059d9f1bbced8932f7 https://www.encodeproject.org/files/ENCFF815TNX/@@download/ENCFF815TNX.bigWig GRCh38 released antibody characterized with exemption ENCFF245QLY bigWig fold change over control ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF833WHB, ENCFF950AXC 1161289247 ENCODE Processing Pipeline 65d2f83a909f560ee68543461fe966f8 https://www.encodeproject.org/files/ENCFF245QLY/@@download/ENCFF245QLY.bigWig GRCh38 released antibody characterized with exemption ENCFF729XPZ bigWig fold change over control ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF190EPQ, ENCFF833WHB, ENCFF950AXC, ENCFF960PYI 2212101825 ENCODE Processing Pipeline b5d79d8eae539ad2209a06a3c548d4b5 https://www.encodeproject.org/files/ENCFF729XPZ/@@download/ENCFF729XPZ.bigWig GRCh38 released antibody characterized with exemption ENCFF498YGH bed narrowPeak optimal idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF096AMF, ENCFF374YBP, ENCFF419RSJ, ENCFF833YAM 710168 ENCODE Processing Pipeline 78bed421b0cc4daa6c321fab2fb39d52 https://www.encodeproject.org/files/ENCFF498YGH/@@download/ENCFF498YGH.bed.gz GRCh38 released antibody characterized with exemption ENCFF969EIO bigBed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF096AMF 11645346 ENCODE Processing Pipeline 270fd1f3b48637bcf09597e4c9f6e8e0 https://www.encodeproject.org/files/ENCFF969EIO/@@download/ENCFF969EIO.bigBed GRCh38 released antibody characterized with exemption ENCFF480KLS bigBed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF833YAM 11518434 ENCODE Processing Pipeline 4e6e267acf9630fe16093843da9f46b8 https://www.encodeproject.org/files/ENCFF480KLS/@@download/ENCFF480KLS.bigBed GRCh38 released antibody characterized with exemption ENCFF973VTV bigBed narrowPeak conservative idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF793VQT 985663 ENCODE Processing Pipeline fdacaee116c645aa6ab9486422526e62 https://www.encodeproject.org/files/ENCFF973VTV/@@download/ENCFF973VTV.bigBed GRCh38 released antibody characterized with exemption ENCFF793VQT bed narrowPeak conservative idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF096AMF, ENCFF374YBP, ENCFF419RSJ, ENCFF833YAM 515898 ENCODE Processing Pipeline 84ee170b523a2373ac129506e3509925 https://www.encodeproject.org/files/ENCFF793VQT/@@download/ENCFF793VQT.bed.gz GRCh38 released antibody characterized with exemption ENCFF833YAM bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF190EPQ, ENCFF960PYI 6623002 ENCODE Processing Pipeline df6aeb43886aca95d90949285da672eb https://www.encodeproject.org/files/ENCFF833YAM/@@download/ENCFF833YAM.bed.gz GRCh38 released antibody characterized with exemption ENCFF374YBP bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF833WHB, ENCFF950AXC 6381289 ENCODE Processing Pipeline 0c98c68e5c86b6de7394a9def546fd33 https://www.encodeproject.org/files/ENCFF374YBP/@@download/ENCFF374YBP.bed.gz GRCh38 released antibody characterized with exemption ENCFF096AMF bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF190EPQ, ENCFF833WHB, ENCFF950AXC, ENCFF960PYI 7181625 ENCODE Processing Pipeline cf3cccb063dfa6f959288523cc6f263a https://www.encodeproject.org/files/ENCFF096AMF/@@download/ENCFF096AMF.bed.gz GRCh38 released antibody characterized with exemption ENCFF399AQL bigBed narrowPeak optimal idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF498YGH 1243138 ENCODE Processing Pipeline 3b94be7a1b0e7c375ce426ebe0745838 https://www.encodeproject.org/files/ENCFF399AQL/@@download/ENCFF399AQL.bigBed GRCh38 released antibody characterized with exemption ENCFF200LFR bigBed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF374YBP 11510175 ENCODE Processing Pipeline 17f5ce2468f28f53f2c0ee75b500772c https://www.encodeproject.org/files/ENCFF200LFR/@@download/ENCFF200LFR.bigBed GRCh38 released antibody characterized with exemption ENCFF693VZG bigWig signal p-value ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF608GXH, ENCFF999EQI 1133598413 ENCODE Processing Pipeline 44bae422677a4047872bc2e3709f9c96 https://www.encodeproject.org/files/ENCFF693VZG/@@download/ENCFF693VZG.bigWig hg19 released antibody characterized with exemption ENCFF360ULG bigBed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF684VZS 11621446 ENCODE Processing Pipeline ccb5514976e586d3484be587f7d2d946 https://www.encodeproject.org/files/ENCFF360ULG/@@download/ENCFF360ULG.bigBed hg19 released antibody characterized with exemption ENCFF543EHG bigBed narrowPeak optimal idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF658YLW 1238473 ENCODE Processing Pipeline 6471ff4f99acdb855bc8d3d4e71511cc https://www.encodeproject.org/files/ENCFF543EHG/@@download/ENCFF543EHG.bigBed hg19 released antibody characterized with exemption ENCFF570XLJ bigWig fold change over control ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF459NAB 1356950427 ENCODE Processing Pipeline 72b7146dea34a453cecfbef45c89d2e8 https://www.encodeproject.org/files/ENCFF570XLJ/@@download/ENCFF570XLJ.bigWig hg19 released antibody characterized with exemption ENCFF510UKU bed narrowPeak conservative idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF302KGG, ENCFF556TCV, ENCFF684VZS 515273 ENCODE Processing Pipeline f665efcb7f97b761083b7063de72a569 https://www.encodeproject.org/files/ENCFF510UKU/@@download/ENCFF510UKU.bed.gz hg19 released antibody characterized with exemption ENCFF538BAN bigBed narrowPeak conservative idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF510UKU 977215 ENCODE Processing Pipeline 23e045d5d3b81dc723c36ef25ca543ba https://www.encodeproject.org/files/ENCFF538BAN/@@download/ENCFF538BAN.bigBed hg19 released antibody characterized with exemption ENCFF373IBG bigWig signal p-value ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF459NAB 1254945576 ENCODE Processing Pipeline f1e16ff18ce8a66f5d7fe31f0ad19499 https://www.encodeproject.org/files/ENCFF373IBG/@@download/ENCFF373IBG.bigWig hg19 released antibody characterized with exemption ENCFF979IWQ bigWig fold change over control ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF608GXH, ENCFF999EQI 1156578964 ENCODE Processing Pipeline 509313e37ab6df74180fc0946815a3bf https://www.encodeproject.org/files/ENCFF979IWQ/@@download/ENCFF979IWQ.bigWig hg19 released antibody characterized with exemption ENCFF556TCV bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF459NAB 6744246 ENCODE Processing Pipeline 5c91e4ec268e116bfae760f3b6477315 https://www.encodeproject.org/files/ENCFF556TCV/@@download/ENCFF556TCV.bed.gz hg19 released antibody characterized with exemption ENCFF684VZS bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF449NNE, ENCFF459NAB, ENCFF608GXH, ENCFF999EQI 7194087 ENCODE Processing Pipeline 7b3a54209ccca9e51fb6cd38b8790a88 https://www.encodeproject.org/files/ENCFF684VZS/@@download/ENCFF684VZS.bed.gz hg19 released antibody characterized with exemption ENCFF658YLW bed narrowPeak optimal idr thresholded peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF302KGG, ENCFF556TCV, ENCFF684VZS 712827 ENCODE Processing Pipeline e36045cc8769b117f494406dc120ea94 https://www.encodeproject.org/files/ENCFF658YLW/@@download/ENCFF658YLW.bed.gz hg19 released antibody characterized with exemption ENCFF670VDB bigWig signal p-value ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF449NNE, ENCFF459NAB, ENCFF608GXH, ENCFF999EQI 1658661966 ENCODE Processing Pipeline dd1a3116ac52075a1d2522f360b8417a https://www.encodeproject.org/files/ENCFF670VDB/@@download/ENCFF670VDB.bigWig hg19 released antibody characterized with exemption ENCFF302KGG bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF608GXH, ENCFF999EQI 6513399 ENCODE Processing Pipeline 281d828127b433784466c4edb4023bdf https://www.encodeproject.org/files/ENCFF302KGG/@@download/ENCFF302KGG.bed.gz hg19 released antibody characterized with exemption ENCFF500BBK bigWig fold change over control ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF449NNE, ENCFF459NAB, ENCFF608GXH, ENCFF999EQI 2214314590 ENCODE Processing Pipeline 7ab8c34dc152e611498495b419f5fc62 https://www.encodeproject.org/files/ENCFF500BBK/@@download/ENCFF500BBK.bigWig hg19 released antibody characterized with exemption ENCFF755YFI bigBed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556TCV 11496467 ENCODE Processing Pipeline c3a9f0a034acfec5c09abadc8210c77d https://www.encodeproject.org/files/ENCFF755YFI/@@download/ENCFF755YFI.bigBed hg19 released antibody characterized with exemption ENCFF789HVE bigBed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF302KGG 11519391 ENCODE Processing Pipeline 03ebdfe80664109c520e4bf1291d2a6a https://www.encodeproject.org/files/ENCFF789HVE/@@download/ENCFF789HVE.bigBed hg19 released antibody characterized with exemption ENCFF201BJK fastq reads ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF655YHB 3171096348 Michael Snyder, Stanford 0fa1d2cb3322ac861ca77bb2106e8955 SRA:SRR5111069 https://www.encodeproject.org/files/ENCFF201BJK/@@download/ENCFF201BJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF979NLP fastq reads ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF419EHN 1535457798 Michael Snyder, Stanford 66684f732509aa1882e5b968a7d4f7dd SRA:SRR5111070 https://www.encodeproject.org/files/ENCFF979NLP/@@download/ENCFF979NLP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF655YHB fastq reads ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF201BJK 3296390634 Michael Snyder, Stanford 856834e4c830a5a5e45480a7a97e971b SRA:SRR5111069 https://www.encodeproject.org/files/ENCFF655YHB/@@download/ENCFF655YHB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF419EHN fastq reads ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF979NLP 1548942835 Michael Snyder, Stanford 71dc337a72f353d1642d1e0bb7d6fe30 SRA:SRR5111070 https://www.encodeproject.org/files/ENCFF419EHN/@@download/ENCFF419EHN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF831EOF bam unfiltered alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419EHN, ENCFF643CGH, ENCFF979NLP 3555157252 ENCODE Processing Pipeline 8c12a350f87a9000ab186c9d95c86ec0 https://www.encodeproject.org/files/ENCFF831EOF/@@download/ENCFF831EOF.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF478ATT bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419EHN, ENCFF643CGH, ENCFF979NLP 3143037693 ENCODE Processing Pipeline 4fb2a5560b7453de85c3cac005d095c2 https://www.encodeproject.org/files/ENCFF478ATT/@@download/ENCFF478ATT.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF774TAG bam unfiltered alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF201BJK, ENCFF643CGH, ENCFF655YHB 7080494057 ENCODE Processing Pipeline bfa90b5a7861532d1a466b9dcf0db64b https://www.encodeproject.org/files/ENCFF774TAG/@@download/ENCFF774TAG.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF045VLO bam unfiltered alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419EHN, ENCFF807MUK, ENCFF979NLP 3549934657 ENCODE Processing Pipeline a608d9213223b0f9163d8b1230a7f438 https://www.encodeproject.org/files/ENCFF045VLO/@@download/ENCFF045VLO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF229SPG bam unfiltered alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF201BJK, ENCFF655YHB, ENCFF807MUK 7073442002 ENCODE Processing Pipeline ad0fc5c0cb76d0fea5e3191999cd6f45 https://www.encodeproject.org/files/ENCFF229SPG/@@download/ENCFF229SPG.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF026ZLM bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419EHN, ENCFF807MUK, ENCFF979NLP 3140660547 ENCODE Processing Pipeline 86879a0d61c426fca9e99fa9dfbfb46b https://www.encodeproject.org/files/ENCFF026ZLM/@@download/ENCFF026ZLM.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF452KIM bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF201BJK, ENCFF643CGH, ENCFF655YHB 6022097003 ENCODE Processing Pipeline 23e78e1a8855b307e1158642e7572fdd https://www.encodeproject.org/files/ENCFF452KIM/@@download/ENCFF452KIM.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF612XXN bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF201BJK, ENCFF655YHB, ENCFF807MUK 6019218078 ENCODE Processing Pipeline 0aabb62c75b2c9fcd288ab0fa60e38c7 https://www.encodeproject.org/files/ENCFF612XXN/@@download/ENCFF612XXN.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF206KHK bigWig signal p-value ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF612XXN 1373412424 ENCODE Processing Pipeline 8c11bb674cc1c894e84020e635d4335a https://www.encodeproject.org/files/ENCFF206KHK/@@download/ENCFF206KHK.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF637IRS bigWig signal p-value ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026ZLM 1306211742 ENCODE Processing Pipeline 17ee7f8098c1885ef1448768719786f8 https://www.encodeproject.org/files/ENCFF637IRS/@@download/ENCFF637IRS.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF626AHP bigWig signal p-value ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF026ZLM, ENCFF612XXN 1637303524 ENCODE Processing Pipeline 26b11464ee87b179aade231bc274c68a https://www.encodeproject.org/files/ENCFF626AHP/@@download/ENCFF626AHP.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF829FEO bigWig fold change over control ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF612XXN 1543533041 ENCODE Processing Pipeline 3d4082e41a41274745e8d5d28e865283 https://www.encodeproject.org/files/ENCFF829FEO/@@download/ENCFF829FEO.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF399WGT bigWig fold change over control ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026ZLM 1206959094 ENCODE Processing Pipeline 43d9c1005e12ec1456e08e00299a5bb9 https://www.encodeproject.org/files/ENCFF399WGT/@@download/ENCFF399WGT.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF944TUZ bigWig fold change over control ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF026ZLM, ENCFF612XXN 1952257049 ENCODE Processing Pipeline 345fa088bcdccd3dddf4a1d0db1e16ea https://www.encodeproject.org/files/ENCFF944TUZ/@@download/ENCFF944TUZ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF974FAB bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF612XXN 7070245 ENCODE Processing Pipeline f8cce901b9c38431b8ccb0dd95d11611 https://www.encodeproject.org/files/ENCFF974FAB/@@download/ENCFF974FAB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF777KBI bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026ZLM 6427556 ENCODE Processing Pipeline 29ed32951ac8dc7a311b56a4a747ac38 https://www.encodeproject.org/files/ENCFF777KBI/@@download/ENCFF777KBI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF422UYA bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF026ZLM, ENCFF612XXN 7197735 ENCODE Processing Pipeline 30e45ea5e139b3cce3bf5f0101f0c75d https://www.encodeproject.org/files/ENCFF422UYA/@@download/ENCFF422UYA.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF241KSR bigBed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF777KBI 11377056 ENCODE Processing Pipeline a8cdd9ba32a89b72479391330089a96a https://www.encodeproject.org/files/ENCFF241KSR/@@download/ENCFF241KSR.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF053HZK bigBed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF974FAB 13367496 ENCODE Processing Pipeline 50b7452b476423fba8ab9badfda4dfef https://www.encodeproject.org/files/ENCFF053HZK/@@download/ENCFF053HZK.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF726OIY bigBed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF422UYA 13248539 ENCODE Processing Pipeline 042a1f0c62033b84ecc97ea8e6aa9a41 https://www.encodeproject.org/files/ENCFF726OIY/@@download/ENCFF726OIY.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF107XYH bed narrowPeak conservative idr thresholded peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF422UYA, ENCFF777KBI, ENCFF974FAB 250822 ENCODE Processing Pipeline cf8f0df4e7b4a7de7b18fd416eb708f0 https://www.encodeproject.org/files/ENCFF107XYH/@@download/ENCFF107XYH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF911JRU bigBed narrowPeak conservative idr thresholded peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF107XYH 590847 ENCODE Processing Pipeline abd351a8c502fdf72e39480ffc11168f https://www.encodeproject.org/files/ENCFF911JRU/@@download/ENCFF911JRU.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF796MFI bed narrowPeak optimal idr thresholded peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF422UYA, ENCFF777KBI, ENCFF974FAB 350974 ENCODE Processing Pipeline f2a7c8c2ffcfcc315ccbabbf05ef0edc https://www.encodeproject.org/files/ENCFF796MFI/@@download/ENCFF796MFI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF731DTH bigBed narrowPeak optimal idr thresholded peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF796MFI 755383 ENCODE Processing Pipeline b51b39ba1faba3a44c0c38244fff0493 https://www.encodeproject.org/files/ENCFF731DTH/@@download/ENCFF731DTH.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF683XZH bigWig signal p-value ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF478ATT 1156713657 ENCODE Processing Pipeline 6dae05dc99ad256459c8532806e4c3b2 https://www.encodeproject.org/files/ENCFF683XZH/@@download/ENCFF683XZH.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF131EKK bigWig signal p-value ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF452KIM 1431045704 ENCODE Processing Pipeline 3cf1398a26a74c33fe6a52838c24fbc6 https://www.encodeproject.org/files/ENCFF131EKK/@@download/ENCFF131EKK.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF675YOF bigWig signal p-value ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF452KIM, ENCFF478ATT 1435009921 ENCODE Processing Pipeline a8f15108a62afce933999e50488e7fc4 https://www.encodeproject.org/files/ENCFF675YOF/@@download/ENCFF675YOF.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF154BIK bigWig fold change over control ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF452KIM 1510874917 ENCODE Processing Pipeline 2f8af65b95d347ab3d7dbacd94d1e79f https://www.encodeproject.org/files/ENCFF154BIK/@@download/ENCFF154BIK.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF198UIH bigWig fold change over control ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF452KIM, ENCFF478ATT 1954753758 ENCODE Processing Pipeline ed9cc01d2f8b994550e8aaa755cf3d4a https://www.encodeproject.org/files/ENCFF198UIH/@@download/ENCFF198UIH.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF889VDV bigWig fold change over control ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF478ATT 1201551770 ENCODE Processing Pipeline 4f6397079018e284cba293ab034c22cc https://www.encodeproject.org/files/ENCFF889VDV/@@download/ENCFF889VDV.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF965WLP bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF452KIM 6997730 ENCODE Processing Pipeline 580e12a75ce942696c50ab12e4579181 https://www.encodeproject.org/files/ENCFF965WLP/@@download/ENCFF965WLP.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF555DZF bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF452KIM, ENCFF478ATT 7151835 ENCODE Processing Pipeline fde6e036cee8b0a912fe78317af931a0 https://www.encodeproject.org/files/ENCFF555DZF/@@download/ENCFF555DZF.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF582ZVS bigBed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF965WLP 13371799 ENCODE Processing Pipeline 9f6e14ba45af11916f9c1b423fab30bc https://www.encodeproject.org/files/ENCFF582ZVS/@@download/ENCFF582ZVS.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF516NUK bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF478ATT 6310624 ENCODE Processing Pipeline bde7542250ae73c1da53bb3b83839690 https://www.encodeproject.org/files/ENCFF516NUK/@@download/ENCFF516NUK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF085RPF bigBed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF516NUK 11371771 ENCODE Processing Pipeline a9ebfae0ce6c3cfc447c6b766aff8b11 https://www.encodeproject.org/files/ENCFF085RPF/@@download/ENCFF085RPF.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF183SHS bed narrowPeak optimal idr thresholded peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF516NUK, ENCFF555DZF, ENCFF965WLP 246636 ENCODE Processing Pipeline 985f286e1b0b209cec2b845825e1fda8 https://www.encodeproject.org/files/ENCFF183SHS/@@download/ENCFF183SHS.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF926PXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF183SHS 587139 ENCODE Processing Pipeline ab60f202e9047b0b44b23dacf9ef54ab https://www.encodeproject.org/files/ENCFF926PXZ/@@download/ENCFF926PXZ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF531OID bigBed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF555DZF 13233267 ENCODE Processing Pipeline d3874e0b6e00e97465fc0f5c57488093 https://www.encodeproject.org/files/ENCFF531OID/@@download/ENCFF531OID.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF594EJQ fastq reads ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF541JAR 1880580915 Michael Snyder, Stanford 40f7fd9b38a2be005e2e7add78b80a90 SRA:SRR6214191 https://www.encodeproject.org/files/ENCFF594EJQ/@@download/ENCFF594EJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF541JAR fastq reads ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF594EJQ 1888924136 Michael Snyder, Stanford 913326a5d87234180e5c6215d3c0631b SRA:SRR6214191 https://www.encodeproject.org/files/ENCFF541JAR/@@download/ENCFF541JAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF677MGT fastq reads ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF020ZLF 4242073254 Michael Snyder, Stanford 632174762de4d788c8f1c0a0300f21f3 SRA:SRR6214192 https://www.encodeproject.org/files/ENCFF677MGT/@@download/ENCFF677MGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF020ZLF fastq reads ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF677MGT 4293162350 Michael Snyder, Stanford 7b710ea1932bf143e4c2fa8a6c7b6c73 SRA:SRR6214192 https://www.encodeproject.org/files/ENCFF020ZLF/@@download/ENCFF020ZLF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF423GRN bam unfiltered alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF541JAR, ENCFF594EJQ, ENCFF807MUK 4235273346 ENCODE Processing Pipeline de5578703af676af63abad3d5b85d954 https://www.encodeproject.org/files/ENCFF423GRN/@@download/ENCFF423GRN.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF017NOP bam unfiltered alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF541JAR, ENCFF594EJQ, ENCFF643CGH 4238535858 ENCODE Processing Pipeline a69fdd8346f0ffd30637020c351ef88a https://www.encodeproject.org/files/ENCFF017NOP/@@download/ENCFF017NOP.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF165GUB bam unfiltered alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF020ZLF, ENCFF677MGT, ENCFF807MUK 8638262387 ENCODE Processing Pipeline 697911570b6fd41df7f97d01563c3dd6 https://www.encodeproject.org/files/ENCFF165GUB/@@download/ENCFF165GUB.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF322BXF bam unfiltered alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF020ZLF, ENCFF643CGH, ENCFF677MGT 8651441766 ENCODE Processing Pipeline 1ae391df71b6ac90cb3166dab2fb3520 https://www.encodeproject.org/files/ENCFF322BXF/@@download/ENCFF322BXF.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF538HJQ bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF541JAR, ENCFF594EJQ, ENCFF643CGH 3474553404 ENCODE Processing Pipeline 8c46040f411f191180b1464fec3c0018 https://www.encodeproject.org/files/ENCFF538HJQ/@@download/ENCFF538HJQ.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF129NFS bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF541JAR, ENCFF594EJQ, ENCFF807MUK 3473496356 ENCODE Processing Pipeline 5981147b988dd2e5300794d4328750c2 https://www.encodeproject.org/files/ENCFF129NFS/@@download/ENCFF129NFS.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF695FUY bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF020ZLF, ENCFF643CGH, ENCFF677MGT 7011415187 ENCODE Processing Pipeline 6260f4715641c9909d1b79e673652fdb https://www.encodeproject.org/files/ENCFF695FUY/@@download/ENCFF695FUY.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF897SYI bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF020ZLF, ENCFF677MGT, ENCFF807MUK 7011385641 ENCODE Processing Pipeline 027bf27204ba07e461ad504a889f9381 https://www.encodeproject.org/files/ENCFF897SYI/@@download/ENCFF897SYI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF513ABJ bigWig fold change over control ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF129NFS 1133795548 ENCODE Processing Pipeline 3569058b55046d1d77f687eecaef24ad https://www.encodeproject.org/files/ENCFF513ABJ/@@download/ENCFF513ABJ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF171UMT bigWig signal p-value ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF129NFS, ENCFF897SYI 1997220566 ENCODE Processing Pipeline 2bf37c24bdb4f38808bdd09a152a229c https://www.encodeproject.org/files/ENCFF171UMT/@@download/ENCFF171UMT.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF921AJM bigWig signal p-value ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF695FUY 1398414097 ENCODE Processing Pipeline 4d42200f36beeffc93f23a96e94823af https://www.encodeproject.org/files/ENCFF921AJM/@@download/ENCFF921AJM.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF117GOI bigWig fold change over control ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF129NFS, ENCFF897SYI 2005642069 ENCODE Processing Pipeline 5a84c5724499b5a087463dc7e230ebbf https://www.encodeproject.org/files/ENCFF117GOI/@@download/ENCFF117GOI.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF641QDG bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF897SYI 6341700 ENCODE Processing Pipeline 9a5930f8bcaae45765283ccbb2fc9d9d https://www.encodeproject.org/files/ENCFF641QDG/@@download/ENCFF641QDG.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF431GSU bigBed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF634NTU 11350976 ENCODE Processing Pipeline 6b5359b91193eee9e0e3f5a91a7305f8 https://www.encodeproject.org/files/ENCFF431GSU/@@download/ENCFF431GSU.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF804GNX bigWig signal p-value ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF897SYI 1308559822 ENCODE Processing Pipeline 33a033f0dd886b99da6bbdfe76017292 https://www.encodeproject.org/files/ENCFF804GNX/@@download/ENCFF804GNX.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF673ZXX bigWig signal p-value ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF538HJQ 1205113549 ENCODE Processing Pipeline 376c89dc0e13cd40b3a9369361590e6f https://www.encodeproject.org/files/ENCFF673ZXX/@@download/ENCFF673ZXX.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF880DFU bigBed narrowPeak conservative idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF767YXX 150946 ENCODE Processing Pipeline 26f223181de8ea365bf02ac31c3b76fb https://www.encodeproject.org/files/ENCFF880DFU/@@download/ENCFF880DFU.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF342OTH bigBed narrowPeak optimal idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF449EZT 222143 ENCODE Processing Pipeline b7fb71a9a3823a61b9d8b2c2c2485dcf https://www.encodeproject.org/files/ENCFF342OTH/@@download/ENCFF342OTH.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF401LPM bigWig fold change over control ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF695FUY 1628566756 ENCODE Processing Pipeline d6d5b09ea909fa9ea7ca5326859c14ea https://www.encodeproject.org/files/ENCFF401LPM/@@download/ENCFF401LPM.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF634NTU bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF129NFS, ENCFF897SYI 7126343 ENCODE Processing Pipeline 021461e2edc7b85315042c5ef80c7c03 https://www.encodeproject.org/files/ENCFF634NTU/@@download/ENCFF634NTU.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF508ADW bigBed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF641QDG 11215342 ENCODE Processing Pipeline c415b38f8a88d4dac82b98b444100cda https://www.encodeproject.org/files/ENCFF508ADW/@@download/ENCFF508ADW.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF116ZLW bigWig fold change over control ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF897SYI 1626829774 ENCODE Processing Pipeline 4e92ab548f8532cff030c90ffb35ae5a https://www.encodeproject.org/files/ENCFF116ZLW/@@download/ENCFF116ZLW.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF100WYT bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF129NFS 5994958 ENCODE Processing Pipeline 5e1c47ea69bd5de7545540aa01247e8d https://www.encodeproject.org/files/ENCFF100WYT/@@download/ENCFF100WYT.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF450BMF bigBed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF100WYT 11390792 ENCODE Processing Pipeline 05c6b1eee7b0b367a8615c5064261d60 https://www.encodeproject.org/files/ENCFF450BMF/@@download/ENCFF450BMF.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF767YXX bed narrowPeak conservative idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF100WYT, ENCFF634NTU, ENCFF641QDG 58534 ENCODE Processing Pipeline b062be8e443d190fcf380d2d833bd75b https://www.encodeproject.org/files/ENCFF767YXX/@@download/ENCFF767YXX.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF323MNK bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF695FUY 6338279 ENCODE Processing Pipeline 459c4eb2616949ee7f90dd3d47198c69 https://www.encodeproject.org/files/ENCFF323MNK/@@download/ENCFF323MNK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF084NPF bigWig signal p-value ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF129NFS 1205724782 ENCODE Processing Pipeline 26fb6135f07478a0ca83cab645bea61f https://www.encodeproject.org/files/ENCFF084NPF/@@download/ENCFF084NPF.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF363ZUP bigWig fold change over control ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF538HJQ 1131468095 ENCODE Processing Pipeline 6d61dae6462b3b07541fe00eb5116996 https://www.encodeproject.org/files/ENCFF363ZUP/@@download/ENCFF363ZUP.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF978MNE bigWig signal p-value ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF538HJQ, ENCFF695FUY 1997937857 ENCODE Processing Pipeline 020e453e128f2e58a7d7171252f71555 https://www.encodeproject.org/files/ENCFF978MNE/@@download/ENCFF978MNE.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF449EZT bed narrowPeak optimal idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF100WYT, ENCFF634NTU, ENCFF641QDG 109226 ENCODE Processing Pipeline e577eb947b5c791b30df969f0564324b https://www.encodeproject.org/files/ENCFF449EZT/@@download/ENCFF449EZT.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF100PJN bigWig fold change over control ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF538HJQ, ENCFF695FUY 2008938639 ENCODE Processing Pipeline 9810d432982e5b335939a908f84591ef https://www.encodeproject.org/files/ENCFF100PJN/@@download/ENCFF100PJN.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF390LXD bigBed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF937CGY 11357366 ENCODE Processing Pipeline ec87f26bc59dcd4432e93a2f4c62fa41 https://www.encodeproject.org/files/ENCFF390LXD/@@download/ENCFF390LXD.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF354SKU bigBed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF275MZN 11401118 ENCODE Processing Pipeline 2eee1a550f65fbf875f553a64c663c63 https://www.encodeproject.org/files/ENCFF354SKU/@@download/ENCFF354SKU.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF793SZW bed narrowPeak conservative idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF275MZN, ENCFF323MNK, ENCFF419RSJ, ENCFF937CGY 57735 ENCODE Processing Pipeline a6a08126cb6f4b1953ba0ec8675df85a https://www.encodeproject.org/files/ENCFF793SZW/@@download/ENCFF793SZW.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF020OCD bigBed narrowPeak optimal idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF617QGK 219971 ENCODE Processing Pipeline 6fdaa88dfd9664222be439aa3417815e https://www.encodeproject.org/files/ENCFF020OCD/@@download/ENCFF020OCD.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF275MZN bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF538HJQ 5992494 ENCODE Processing Pipeline ff5b59612ccf05e8bc7951570db1c3ec https://www.encodeproject.org/files/ENCFF275MZN/@@download/ENCFF275MZN.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF937CGY bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF538HJQ, ENCFF695FUY 7123927 ENCODE Processing Pipeline a78493a2b314afe9f6635c4883f0d44b https://www.encodeproject.org/files/ENCFF937CGY/@@download/ENCFF937CGY.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF177GOW bigBed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF323MNK 11232944 ENCODE Processing Pipeline 575d4b7797b5bcb15d6292a6c7ad988b https://www.encodeproject.org/files/ENCFF177GOW/@@download/ENCFF177GOW.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF132NUE bigBed narrowPeak conservative idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF793SZW 149901 ENCODE Processing Pipeline c0f679c2ea29867f232426ffd2d7d106 https://www.encodeproject.org/files/ENCFF132NUE/@@download/ENCFF132NUE.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF617QGK bed narrowPeak optimal idr thresholded peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF275MZN, ENCFF323MNK, ENCFF419RSJ, ENCFF937CGY 107314 ENCODE Processing Pipeline fdd94ac0787599d564b07193e4ec41fd https://www.encodeproject.org/files/ENCFF617QGK/@@download/ENCFF617QGK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF371HHV fastq reads ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF688KSF 2899016175 Michael Snyder, Stanford ed3d00bafea31872ef0832ed9a5258e9 SRA:SRR5111076 https://www.encodeproject.org/files/ENCFF371HHV/@@download/ENCFF371HHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF957TBU fastq reads ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF509LKR 2537500558 Michael Snyder, Stanford 8c4baadd28eab12bbf0985538c047402 SRA:SRR5111075 https://www.encodeproject.org/files/ENCFF957TBU/@@download/ENCFF957TBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF509LKR fastq reads ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF957TBU 2611416851 Michael Snyder, Stanford b51818087ad84a778c0838479cab1cd1 SRA:SRR5111075 https://www.encodeproject.org/files/ENCFF509LKR/@@download/ENCFF509LKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF688KSF fastq reads ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF371HHV 2890528686 Michael Snyder, Stanford 99e8a26d312bbd2e3b766cb56d23b048 SRA:SRR5111076 https://www.encodeproject.org/files/ENCFF688KSF/@@download/ENCFF688KSF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF883REN bam unfiltered alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF509LKR, ENCFF807MUK, ENCFF957TBU 5636233451 ENCODE Processing Pipeline 49d7f24d22477dd869ea4fdc8db11c63 https://www.encodeproject.org/files/ENCFF883REN/@@download/ENCFF883REN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF369RMP bam unfiltered alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF371HHV, ENCFF643CGH, ENCFF688KSF 6344757040 ENCODE Processing Pipeline 5d99c953c37cdb560c6cd724f4d9440e https://www.encodeproject.org/files/ENCFF369RMP/@@download/ENCFF369RMP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF715WZI bam unfiltered alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF509LKR, ENCFF643CGH, ENCFF957TBU 5643563479 ENCODE Processing Pipeline 9697c353689ab19741f4a849418f2cf7 https://www.encodeproject.org/files/ENCFF715WZI/@@download/ENCFF715WZI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF352XTC bam unfiltered alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF371HHV, ENCFF688KSF, ENCFF807MUK 6337451040 ENCODE Processing Pipeline be3eff1363035a2b5e4b29b03417d2f2 https://www.encodeproject.org/files/ENCFF352XTC/@@download/ENCFF352XTC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF658SBL bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF371HHV, ENCFF688KSF, ENCFF807MUK 5480235003 ENCODE Processing Pipeline 4f7fd4cc6f7dea636643a71ffe920a82 https://www.encodeproject.org/files/ENCFF658SBL/@@download/ENCFF658SBL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF913XHL bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF371HHV, ENCFF643CGH, ENCFF688KSF 5482217307 ENCODE Processing Pipeline 0e9f44ec384a4b22af5edc459a617365 https://www.encodeproject.org/files/ENCFF913XHL/@@download/ENCFF913XHL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF519SQU bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF509LKR, ENCFF643CGH, ENCFF957TBU 4973242410 ENCODE Processing Pipeline aa8dd50e5fdc41d53d4e0c43d512bbf9 https://www.encodeproject.org/files/ENCFF519SQU/@@download/ENCFF519SQU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF081WJA bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF509LKR, ENCFF807MUK, ENCFF957TBU 4971361520 ENCODE Processing Pipeline 6537c7fe2bdc5421f21d5fc8e539b5a5 https://www.encodeproject.org/files/ENCFF081WJA/@@download/ENCFF081WJA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF836OHM bigWig signal p-value ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF081WJA 1408241474 ENCODE Processing Pipeline 00223b19143f449b43f6e943e6ac3c09 https://www.encodeproject.org/files/ENCFF836OHM/@@download/ENCFF836OHM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF240SYE bigWig signal p-value ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF658SBL 1420830575 ENCODE Processing Pipeline 71b2a5f2fe6acf2eb95247d90de3171b https://www.encodeproject.org/files/ENCFF240SYE/@@download/ENCFF240SYE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF910GQV bigWig signal p-value ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF081WJA, ENCFF658SBL 1938339345 ENCODE Processing Pipeline c4ce3c5d25a7eb92336abab7d547995f https://www.encodeproject.org/files/ENCFF910GQV/@@download/ENCFF910GQV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF889HNF bigWig fold change over control ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF081WJA 1449406340 ENCODE Processing Pipeline 9a79881ef91b277b9352682fa498ef12 https://www.encodeproject.org/files/ENCFF889HNF/@@download/ENCFF889HNF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF681FYO bigWig fold change over control ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF658SBL 1488817429 ENCODE Processing Pipeline e124ddff31894e1061aff36650f07166 https://www.encodeproject.org/files/ENCFF681FYO/@@download/ENCFF681FYO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF156IKE bigWig fold change over control ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF081WJA, ENCFF658SBL 2057959682 ENCODE Processing Pipeline 55acaa45b7f7674dce5204d77c3c7617 https://www.encodeproject.org/files/ENCFF156IKE/@@download/ENCFF156IKE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF888UCO bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF081WJA 6961492 ENCODE Processing Pipeline 61f41031c198568b2b3e8fbf30e51fb8 https://www.encodeproject.org/files/ENCFF888UCO/@@download/ENCFF888UCO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF336ENE bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF658SBL 7089955 ENCODE Processing Pipeline a85121c006d7fcb3f709f207eb39e260 https://www.encodeproject.org/files/ENCFF336ENE/@@download/ENCFF336ENE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF653SXC bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF081WJA, ENCFF658SBL 7257088 ENCODE Processing Pipeline 151efa89cc879072bda36a5f838afe96 https://www.encodeproject.org/files/ENCFF653SXC/@@download/ENCFF653SXC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF166HAQ bigBed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF888UCO 13298721 ENCODE Processing Pipeline 08d05660cbfbc662c9c3ee922abb8bbe https://www.encodeproject.org/files/ENCFF166HAQ/@@download/ENCFF166HAQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF074YLB bigBed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF336ENE 13200939 ENCODE Processing Pipeline ee7254f60171492a683424fc6d67dc23 https://www.encodeproject.org/files/ENCFF074YLB/@@download/ENCFF074YLB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF760BOQ bigBed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF653SXC 13065357 ENCODE Processing Pipeline f7abb5230683aa8334f28d145bff48ad https://www.encodeproject.org/files/ENCFF760BOQ/@@download/ENCFF760BOQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF906MWO bed narrowPeak conservative idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF336ENE, ENCFF653SXC, ENCFF888UCO 477196 ENCODE Processing Pipeline 70cb277ecf9fb42ef8813e8466fe3248 https://www.encodeproject.org/files/ENCFF906MWO/@@download/ENCFF906MWO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF658NFB bigBed narrowPeak conservative idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF906MWO 912298 ENCODE Processing Pipeline 083be164a50014c7b76e0822c70a5d01 https://www.encodeproject.org/files/ENCFF658NFB/@@download/ENCFF658NFB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF065RDT bed narrowPeak optimal idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF336ENE, ENCFF653SXC, ENCFF888UCO 528735 ENCODE Processing Pipeline f8031a38c7e801267f62ca7198c1284f https://www.encodeproject.org/files/ENCFF065RDT/@@download/ENCFF065RDT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF504FOK bigBed narrowPeak optimal idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF065RDT 993119 ENCODE Processing Pipeline 5240b5be9482404980b00d0d7f598107 https://www.encodeproject.org/files/ENCFF504FOK/@@download/ENCFF504FOK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF042KBO bigWig signal p-value ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF519SQU 1484479176 ENCODE Processing Pipeline f3fb2bc341429b4c994d8ce7562edc19 https://www.encodeproject.org/files/ENCFF042KBO/@@download/ENCFF042KBO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF532ZGI bigWig signal p-value ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF913XHL 1271983959 ENCODE Processing Pipeline 2eda8bc57c2ce8a3332759b566551895 https://www.encodeproject.org/files/ENCFF532ZGI/@@download/ENCFF532ZGI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF514WRM bigWig signal p-value ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519SQU, ENCFF913XHL 1939515571 ENCODE Processing Pipeline cc3de944dba14d049ad53ce8e909af46 https://www.encodeproject.org/files/ENCFF514WRM/@@download/ENCFF514WRM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF547DZF bigWig fold change over control ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF519SQU 1447864268 ENCODE Processing Pipeline 21ee4005346e042b2a71ec727e3889b8 https://www.encodeproject.org/files/ENCFF547DZF/@@download/ENCFF547DZF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF744GJI bigWig fold change over control ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF913XHL 1491201210 ENCODE Processing Pipeline e68f7760b4ae4f6938b5db9d0a1983c1 https://www.encodeproject.org/files/ENCFF744GJI/@@download/ENCFF744GJI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF085LTS bigWig fold change over control ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519SQU, ENCFF913XHL 2060851657 ENCODE Processing Pipeline 1695e5aa3982f631b2902b1fea9535db https://www.encodeproject.org/files/ENCFF085LTS/@@download/ENCFF085LTS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF323RRQ bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF519SQU 6886035 ENCODE Processing Pipeline c385f356cb32dc46751680ba8dddf39f https://www.encodeproject.org/files/ENCFF323RRQ/@@download/ENCFF323RRQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF213ISW bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF913XHL 7003043 ENCODE Processing Pipeline feee72ddabbc9106015de92bc3f52a32 https://www.encodeproject.org/files/ENCFF213ISW/@@download/ENCFF213ISW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF586ZIX bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519SQU, ENCFF913XHL 7245065 ENCODE Processing Pipeline 81985e006610948ea83d95064049c3b3 https://www.encodeproject.org/files/ENCFF586ZIX/@@download/ENCFF586ZIX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF503RSG bigBed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF213ISW 13189563 ENCODE Processing Pipeline 18a57d1ec7ef4f520be3cede63711ad2 https://www.encodeproject.org/files/ENCFF503RSG/@@download/ENCFF503RSG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF296HQS bigBed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF323RRQ 13305971 ENCODE Processing Pipeline 870b96b1662175b9960cccea0a02e68f https://www.encodeproject.org/files/ENCFF296HQS/@@download/ENCFF296HQS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF451KJL bed narrowPeak conservative idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF213ISW, ENCFF323RRQ, ENCFF419RSJ, ENCFF586ZIX 482270 ENCODE Processing Pipeline 205bd5b7f328198525945761af7d062d https://www.encodeproject.org/files/ENCFF451KJL/@@download/ENCFF451KJL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF843LHK bigBed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF586ZIX 13067108 ENCODE Processing Pipeline b909f942a693ebe34926de8cffd3e859 https://www.encodeproject.org/files/ENCFF843LHK/@@download/ENCFF843LHK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF558KYI bigBed narrowPeak conservative idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF451KJL 920776 ENCODE Processing Pipeline 5bee9e7df9f35d38f07c67ee827021e8 https://www.encodeproject.org/files/ENCFF558KYI/@@download/ENCFF558KYI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF661EXV bed narrowPeak optimal idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF213ISW, ENCFF323RRQ, ENCFF419RSJ, ENCFF586ZIX 521150 ENCODE Processing Pipeline 0656a0331c401b4978dafa5b33611e06 https://www.encodeproject.org/files/ENCFF661EXV/@@download/ENCFF661EXV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF771UAO bigBed narrowPeak optimal idr thresholded peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF661EXV 983113 ENCODE Processing Pipeline 72178f75a98b500d4cf6cefbabb9f686 https://www.encodeproject.org/files/ENCFF771UAO/@@download/ENCFF771UAO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF907JIE fastq reads ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF399CCC 2247468831 Michael Snyder, Stanford f803648c02f1fd83256344426e557179 SRA:SRR6213842 https://www.encodeproject.org/files/ENCFF907JIE/@@download/ENCFF907JIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF749JUG fastq reads ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF942QFN 1387013792 Michael Snyder, Stanford ed11fdb833504d89cbdaa80195bb6342 SRA:SRR6213843 https://www.encodeproject.org/files/ENCFF749JUG/@@download/ENCFF749JUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF942QFN fastq reads ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF749JUG 1425690963 Michael Snyder, Stanford d8dcb2e02f9e5a5d223fd20e18231279 SRA:SRR6213843 https://www.encodeproject.org/files/ENCFF942QFN/@@download/ENCFF942QFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF399CCC fastq reads ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF907JIE 2324803844 Michael Snyder, Stanford 9c42e977da8c0e46d264c46fc58bf1ce SRA:SRR6213842 https://www.encodeproject.org/files/ENCFF399CCC/@@download/ENCFF399CCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF483UIU bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF749JUG, ENCFF807MUK, ENCFF942QFN 2260492133 ENCODE Processing Pipeline c0c7a3b8347658aaabcc92c6a346a14b https://www.encodeproject.org/files/ENCFF483UIU/@@download/ENCFF483UIU.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF768VEY bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF399CCC, ENCFF807MUK, ENCFF907JIE 3775558260 ENCODE Processing Pipeline 27c52a68a79f17c8217aeb835f83662d https://www.encodeproject.org/files/ENCFF768VEY/@@download/ENCFF768VEY.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF094JXS bigWig signal p-value ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF483UIU, ENCFF581ZJL 998753202 ENCODE Processing Pipeline 86920756a16a2d189ddfd9dfe6bf3b33 https://www.encodeproject.org/files/ENCFF094JXS/@@download/ENCFF094JXS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF056UGX bigWig signal p-value ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF768VEY 1034454870 ENCODE Processing Pipeline dd10daf760dba79c49de1eccd02670c4 https://www.encodeproject.org/files/ENCFF056UGX/@@download/ENCFF056UGX.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF265XUO bigWig fold change over control ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF483UIU, ENCFF581ZJL 874883309 ENCODE Processing Pipeline bc5c331c2202b1eacd11a228b65c0d38 https://www.encodeproject.org/files/ENCFF265XUO/@@download/ENCFF265XUO.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF803IRQ bigWig signal p-value ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF483UIU, ENCFF581ZJL, ENCFF768VEY 1612566817 ENCODE Processing Pipeline 726abd5acf49e2b4a956aaf8e39ab467 https://www.encodeproject.org/files/ENCFF803IRQ/@@download/ENCFF803IRQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF085AQM bigWig fold change over control ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF768VEY 1065841213 ENCODE Processing Pipeline 30f52e81b43673ee50b8eb9ca7aca353 https://www.encodeproject.org/files/ENCFF085AQM/@@download/ENCFF085AQM.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF710KKZ bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF768VEY 6525420 ENCODE Processing Pipeline 8101449533063d4491dcd437c4d4400e https://www.encodeproject.org/files/ENCFF710KKZ/@@download/ENCFF710KKZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF009LGS bigWig fold change over control ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF483UIU, ENCFF581ZJL, ENCFF768VEY 1867390231 ENCODE Processing Pipeline 22ea6b88382259dc3d50617a8edc76f4 https://www.encodeproject.org/files/ENCFF009LGS/@@download/ENCFF009LGS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF218RJK bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF483UIU, ENCFF581ZJL 6233227 ENCODE Processing Pipeline 90c9ab711eba70a009b0589ea7057131 https://www.encodeproject.org/files/ENCFF218RJK/@@download/ENCFF218RJK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF159RHZ bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF483UIU, ENCFF581ZJL, ENCFF768VEY 7148672 ENCODE Processing Pipeline 54ce759192f750f3ffc29b6826cdc475 https://www.encodeproject.org/files/ENCFF159RHZ/@@download/ENCFF159RHZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF332UTX bigBed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF710KKZ 13275977 ENCODE Processing Pipeline 95e48097216ae7052fef9413125a1627 https://www.encodeproject.org/files/ENCFF332UTX/@@download/ENCFF332UTX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF810SHM bigBed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF218RJK 13373367 ENCODE Processing Pipeline 6de3cb11b1bf8625a91d41f53fb2813d https://www.encodeproject.org/files/ENCFF810SHM/@@download/ENCFF810SHM.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF363NZL bigBed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF159RHZ 13240772 ENCODE Processing Pipeline a2dacc74bf5ba22514b4efe08cdc9912 https://www.encodeproject.org/files/ENCFF363NZL/@@download/ENCFF363NZL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF606KRZ bam unfiltered alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF643CGH, ENCFF749JUG, ENCFF942QFN 3054106769 ENCODE Processing Pipeline 9e9441b63ffbc4479f518c2ee7bb6d07 https://www.encodeproject.org/files/ENCFF606KRZ/@@download/ENCFF606KRZ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF757DMU bam unfiltered alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF399CCC, ENCFF643CGH, ENCFF907JIE 4941081514 ENCODE Processing Pipeline e2b32a87dc9fc2e90fda2e43fb49c3d8 https://www.encodeproject.org/files/ENCFF757DMU/@@download/ENCFF757DMU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF846CYU bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF643CGH, ENCFF749JUG, ENCFF942QFN 2261609064 ENCODE Processing Pipeline 369dc09f70b6be6203675d0abd60b4e8 https://www.encodeproject.org/files/ENCFF846CYU/@@download/ENCFF846CYU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF226KOW bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF399CCC, ENCFF643CGH, ENCFF907JIE 3776769820 ENCODE Processing Pipeline f38981bb5b175d676134bdd5b25e90dc https://www.encodeproject.org/files/ENCFF226KOW/@@download/ENCFF226KOW.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF190IAP bigWig signal p-value ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF226KOW, ENCFF227IZS 940442594 ENCODE Processing Pipeline ffd01a82aeaa1f1215d5588e03b00b11 https://www.encodeproject.org/files/ENCFF190IAP/@@download/ENCFF190IAP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF897PQF bigWig signal p-value ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF846CYU, ENCFF910IKB 863065556 ENCODE Processing Pipeline 268e1ba0f0f5567e46608208fae90da2 https://www.encodeproject.org/files/ENCFF897PQF/@@download/ENCFF897PQF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF648CHS bigWig signal p-value ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF226KOW, ENCFF227IZS, ENCFF846CYU, ENCFF910IKB 1783342060 ENCODE Processing Pipeline e73837b8d789e1ea4220c59d89384084 https://www.encodeproject.org/files/ENCFF648CHS/@@download/ENCFF648CHS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF021BGJ bigWig fold change over control ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF846CYU, ENCFF910IKB 877626020 ENCODE Processing Pipeline 907d589bd7e5ec42f9db4cce4fd24294 https://www.encodeproject.org/files/ENCFF021BGJ/@@download/ENCFF021BGJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF325JPO bigWig fold change over control ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF226KOW, ENCFF227IZS 1062311025 ENCODE Processing Pipeline a5670d63e815c1ce5d73de5b9c77cd82 https://www.encodeproject.org/files/ENCFF325JPO/@@download/ENCFF325JPO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF527AMK bigWig fold change over control ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF226KOW, ENCFF227IZS, ENCFF846CYU, ENCFF910IKB 1855149042 ENCODE Processing Pipeline 1dc12a0fb52529df49e0d487898793f4 https://www.encodeproject.org/files/ENCFF527AMK/@@download/ENCFF527AMK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF936ZSM bigBed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF546JXV 13266759 ENCODE Processing Pipeline 3ca03886c9fb316df9d693be6c67cf93 https://www.encodeproject.org/files/ENCFF936ZSM/@@download/ENCFF936ZSM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF019ZCE bigBed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF877WEN 13244862 ENCODE Processing Pipeline 4cee7d7266f223a0594544e5345cef1a https://www.encodeproject.org/files/ENCFF019ZCE/@@download/ENCFF019ZCE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF877WEN bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF226KOW, ENCFF227IZS, ENCFF846CYU, ENCFF910IKB 7081904 ENCODE Processing Pipeline 79cb452ece2efdba21a13fd906b578ff https://www.encodeproject.org/files/ENCFF877WEN/@@download/ENCFF877WEN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF546JXV bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF226KOW, ENCFF227IZS 6392247 ENCODE Processing Pipeline 5e0fc25c3914668186f0e14aae7b1980 https://www.encodeproject.org/files/ENCFF546JXV/@@download/ENCFF546JXV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF611GWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF634VUQ 311702 ENCODE Processing Pipeline 4f8755cc6258d287faa9c140eafa2bfd https://www.encodeproject.org/files/ENCFF611GWJ/@@download/ENCFF611GWJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF239VPV bigBed narrowPeak optimal idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF445VTT 424862 ENCODE Processing Pipeline 36fc1aa3cf96c74749326f999c76cc3b https://www.encodeproject.org/files/ENCFF239VPV/@@download/ENCFF239VPV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF711DYD bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF846CYU, ENCFF910IKB 6031283 ENCODE Processing Pipeline 7d351d15f9ba1b236be1800fda572f58 https://www.encodeproject.org/files/ENCFF711DYD/@@download/ENCFF711DYD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF562BVE bigBed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF711DYD 13365133 ENCODE Processing Pipeline 045f4a2691dbb85d70660a650cbd553a https://www.encodeproject.org/files/ENCFF562BVE/@@download/ENCFF562BVE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF634VUQ bed narrowPeak conservative idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF546JXV, ENCFF711DYD, ENCFF877WEN 140035 ENCODE Processing Pipeline 266db749f52bbe13e5747d9affba5f00 https://www.encodeproject.org/files/ENCFF634VUQ/@@download/ENCFF634VUQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF445VTT bed narrowPeak optimal idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF546JXV, ENCFF711DYD, ENCFF877WEN 167855 ENCODE Processing Pipeline b3a7a5144a292cafe35edcd2c7e0439d https://www.encodeproject.org/files/ENCFF445VTT/@@download/ENCFF445VTT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF150NGG bam unfiltered alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF749JUG, ENCFF807MUK, ENCFF942QFN 3051878053 ENCODE Processing Pipeline 732cd72bbea0b543e767f2d78abac21e https://www.encodeproject.org/files/ENCFF150NGG/@@download/ENCFF150NGG.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF552TIG bam unfiltered alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF399CCC, ENCFF807MUK, ENCFF907JIE 4936563051 ENCODE Processing Pipeline a66dd58d216b2c89b53deae3d7a5f007 https://www.encodeproject.org/files/ENCFF552TIG/@@download/ENCFF552TIG.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF171BWZ bigBed narrowPeak conservative idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF414ZZX 281127 ENCODE Processing Pipeline ed8229889685c5fb6b9a62d37d411d67 https://www.encodeproject.org/files/ENCFF171BWZ/@@download/ENCFF171BWZ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF414ZZX bed narrowPeak conservative idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF159RHZ, ENCFF218RJK, ENCFF710KKZ 118286 ENCODE Processing Pipeline 321d5c28d1817a7bd38eee7a1389ba70 https://www.encodeproject.org/files/ENCFF414ZZX/@@download/ENCFF414ZZX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF998YJY bed narrowPeak optimal idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF159RHZ, ENCFF218RJK, ENCFF710KKZ 145663 ENCODE Processing Pipeline 167456f68af8d185c73af8324361f14e https://www.encodeproject.org/files/ENCFF998YJY/@@download/ENCFF998YJY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF318DWQ bigBed narrowPeak optimal idr thresholded peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF998YJY 318976 ENCODE Processing Pipeline 9faba44363727dd296833623c313d693 https://www.encodeproject.org/files/ENCFF318DWQ/@@download/ENCFF318DWQ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF808AJP fastq reads ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF453FDD 1814599885 Michael Snyder, Stanford ecde694e845552832a1ac75b88cf0e02 SRA:SRR5111214 https://www.encodeproject.org/files/ENCFF808AJP/@@download/ENCFF808AJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF174HBR fastq reads ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF574GQY 2301113495 Michael Snyder, Stanford 94f71fd4ae0a5b6116a41bdb0f505ae1 SRA:SRR5111213 https://www.encodeproject.org/files/ENCFF174HBR/@@download/ENCFF174HBR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF453FDD fastq reads ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF808AJP 1908874075 Michael Snyder, Stanford d315d10b6dd286f8f080fb21045632cd SRA:SRR5111214 https://www.encodeproject.org/files/ENCFF453FDD/@@download/ENCFF453FDD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF574GQY fastq reads ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF174HBR 2424837318 Michael Snyder, Stanford 2210aabf4baca895ed2463af1687c95a SRA:SRR5111213 https://www.encodeproject.org/files/ENCFF574GQY/@@download/ENCFF574GQY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF261WDT bam unfiltered alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF453FDD, ENCFF807MUK, ENCFF808AJP 4115777760 ENCODE Processing Pipeline a1c8c32efa8f4975584b0aa65a946b27 https://www.encodeproject.org/files/ENCFF261WDT/@@download/ENCFF261WDT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF021MWC bam unfiltered alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF453FDD, ENCFF643CGH, ENCFF808AJP 4118114053 ENCODE Processing Pipeline 6da7eb19cc02232611236c2453105a2f https://www.encodeproject.org/files/ENCFF021MWC/@@download/ENCFF021MWC.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF372IIU bam unfiltered alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF174HBR, ENCFF574GQY, ENCFF807MUK 5101849663 ENCODE Processing Pipeline 4c4a1aeea1d9a8482ec59db6e06a08d2 https://www.encodeproject.org/files/ENCFF372IIU/@@download/ENCFF372IIU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF333QJJ bam unfiltered alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF174HBR, ENCFF574GQY, ENCFF643CGH 5103571897 ENCODE Processing Pipeline b8860defd4db560f6327e0a2f14256b3 https://www.encodeproject.org/files/ENCFF333QJJ/@@download/ENCFF333QJJ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF532LHG bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF453FDD, ENCFF643CGH, ENCFF808AJP 3196186015 ENCODE Processing Pipeline 210027063cb2b778a08412cbc7c621c9 https://www.encodeproject.org/files/ENCFF532LHG/@@download/ENCFF532LHG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF213TEN bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF174HBR, ENCFF574GQY, ENCFF807MUK 3695781771 ENCODE Processing Pipeline 93ad703a3e56c7a4813373216a2975ad https://www.encodeproject.org/files/ENCFF213TEN/@@download/ENCFF213TEN.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF446DII bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF174HBR, ENCFF574GQY, ENCFF643CGH 3696714697 ENCODE Processing Pipeline 653d10b030b13887c52b6da78d5afe21 https://www.encodeproject.org/files/ENCFF446DII/@@download/ENCFF446DII.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF224CNS bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF453FDD, ENCFF807MUK, ENCFF808AJP 3194812190 ENCODE Processing Pipeline f233f6a6d2f9339dd0fc05fac1cf4c36 https://www.encodeproject.org/files/ENCFF224CNS/@@download/ENCFF224CNS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF526YZM bigWig signal p-value ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF213TEN 1181317492 ENCODE Processing Pipeline dada34c282441ae57d290d2050d18e66 https://www.encodeproject.org/files/ENCFF526YZM/@@download/ENCFF526YZM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF287ZFJ bigWig signal p-value ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF224CNS 1232235663 ENCODE Processing Pipeline fbd38011a58a82c020cfbf781685898c https://www.encodeproject.org/files/ENCFF287ZFJ/@@download/ENCFF287ZFJ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF250VNS bigWig signal p-value ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF213TEN, ENCFF224CNS 1557313720 ENCODE Processing Pipeline e8f6f2bf23c3a7299b1af47a33b5b59a https://www.encodeproject.org/files/ENCFF250VNS/@@download/ENCFF250VNS.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF868YOY bigWig fold change over control ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF213TEN 1203470081 ENCODE Processing Pipeline aa4608880784ee4db9adbf8a1a4a3419 https://www.encodeproject.org/files/ENCFF868YOY/@@download/ENCFF868YOY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF006KJM bigWig fold change over control ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF224CNS 1098265936 ENCODE Processing Pipeline 9a88b8f4119633648971cfee57e8ebf2 https://www.encodeproject.org/files/ENCFF006KJM/@@download/ENCFF006KJM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF952GDS bigWig fold change over control ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF213TEN, ENCFF224CNS 1687543059 ENCODE Processing Pipeline 8428acb9236a272d9ae24a73f1e5bb13 https://www.encodeproject.org/files/ENCFF952GDS/@@download/ENCFF952GDS.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF609GIU bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF224CNS 6770293 ENCODE Processing Pipeline 68d6a4e29a6ac0f90767725f727fcede https://www.encodeproject.org/files/ENCFF609GIU/@@download/ENCFF609GIU.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF760HAB bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF213TEN 6665232 ENCODE Processing Pipeline 8cca9b38de7a61be3199d737da5dfe1d https://www.encodeproject.org/files/ENCFF760HAB/@@download/ENCFF760HAB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF543MLG bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF213TEN, ENCFF224CNS 7166636 ENCODE Processing Pipeline a36cc488de7e6d456b0d05f57d9ef6b3 https://www.encodeproject.org/files/ENCFF543MLG/@@download/ENCFF543MLG.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF213SIJ bigBed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF760HAB 13604889 ENCODE Processing Pipeline 9bacec14e5db6d68b4ff6605cde1c746 https://www.encodeproject.org/files/ENCFF213SIJ/@@download/ENCFF213SIJ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF543LYZ bigBed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF609GIU 13490375 ENCODE Processing Pipeline 69605107456036532b597d5c2a44b464 https://www.encodeproject.org/files/ENCFF543LYZ/@@download/ENCFF543LYZ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF387UIQ bigBed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF543MLG 13469265 ENCODE Processing Pipeline f33e082f7cad48008c8724f0449cb13a https://www.encodeproject.org/files/ENCFF387UIQ/@@download/ENCFF387UIQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF448FAP bed narrowPeak conservative idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF543MLG, ENCFF609GIU, ENCFF760HAB 334567 ENCODE Processing Pipeline 4e4dc6ff03a40a4075504043cb391d65 https://www.encodeproject.org/files/ENCFF448FAP/@@download/ENCFF448FAP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF297MCC bigBed narrowPeak conservative idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF448FAP 652330 ENCODE Processing Pipeline 10fc0d5c2f51a44d638de1e346ddbe01 https://www.encodeproject.org/files/ENCFF297MCC/@@download/ENCFF297MCC.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF415VBF bed narrowPeak optimal idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF543MLG, ENCFF609GIU, ENCFF760HAB 348112 ENCODE Processing Pipeline 4ec7c0243a797e956a9d8b6cffc90c85 https://www.encodeproject.org/files/ENCFF415VBF/@@download/ENCFF415VBF.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF031XXN bigBed narrowPeak optimal idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF415VBF 678134 ENCODE Processing Pipeline ab7f25466980cd11722ba6373d7aa0ac https://www.encodeproject.org/files/ENCFF031XXN/@@download/ENCFF031XXN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF522BRP bigWig signal p-value ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF446DII 1255324666 ENCODE Processing Pipeline f4b7bc4d7de6c970b512f3b44b75d69b https://www.encodeproject.org/files/ENCFF522BRP/@@download/ENCFF522BRP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF968EYY bigWig signal p-value ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF532LHG 1191444237 ENCODE Processing Pipeline a847239c3e829928dbadb3761366e9d8 https://www.encodeproject.org/files/ENCFF968EYY/@@download/ENCFF968EYY.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF719GQP bigWig fold change over control ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF446DII 1176381407 ENCODE Processing Pipeline 85b99323d56c507d9d0b70eb06e27eaa https://www.encodeproject.org/files/ENCFF719GQP/@@download/ENCFF719GQP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF268JJZ bigWig signal p-value ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF446DII, ENCFF532LHG 1542048478 ENCODE Processing Pipeline 221a89cb673b997520b7d287105e1c9e https://www.encodeproject.org/files/ENCFF268JJZ/@@download/ENCFF268JJZ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF510WAR bigWig fold change over control ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF532LHG 1101730843 ENCODE Processing Pipeline 7c166f4ae49dc4f9784377e602336f56 https://www.encodeproject.org/files/ENCFF510WAR/@@download/ENCFF510WAR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF463XAL bigWig fold change over control ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF446DII, ENCFF532LHG 1668512223 ENCODE Processing Pipeline 2a309b9679a23d56580141343978debb https://www.encodeproject.org/files/ENCFF463XAL/@@download/ENCFF463XAL.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF106LTW bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF446DII 6544459 ENCODE Processing Pipeline e49c26712871c9ee9d45d717e83e6739 https://www.encodeproject.org/files/ENCFF106LTW/@@download/ENCFF106LTW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF047DWV bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF532LHG 6658260 ENCODE Processing Pipeline 4831021e9247f03d662c9ed355445201 https://www.encodeproject.org/files/ENCFF047DWV/@@download/ENCFF047DWV.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF338POR bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF446DII, ENCFF532LHG 7092780 ENCODE Processing Pipeline 9f390e7cad280cc2f2fe62009dcdfa37 https://www.encodeproject.org/files/ENCFF338POR/@@download/ENCFF338POR.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF944IKP bigBed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF106LTW 13611001 ENCODE Processing Pipeline 1ce3e6e3c0b7dcf5ff0b8ca264991d98 https://www.encodeproject.org/files/ENCFF944IKP/@@download/ENCFF944IKP.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF733QFT bigBed narrowPeak conservative idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF563UJS 640947 ENCODE Processing Pipeline e41edf901aeea6679a0e632560d37ee4 https://www.encodeproject.org/files/ENCFF733QFT/@@download/ENCFF733QFT.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF917GQW bigBed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF047DWV 13509314 ENCODE Processing Pipeline fc62f4d1b20a0420667378e3d6451b9b https://www.encodeproject.org/files/ENCFF917GQW/@@download/ENCFF917GQW.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF817UXW bigBed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF338POR 13455812 ENCODE Processing Pipeline 873481aa0cf0d69714deb43af3d9068c https://www.encodeproject.org/files/ENCFF817UXW/@@download/ENCFF817UXW.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF563UJS bed narrowPeak conservative idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF047DWV, ENCFF106LTW, ENCFF338POR, ENCFF419RSJ 324243 ENCODE Processing Pipeline e687674785bc9532763a96e8b17adfd7 https://www.encodeproject.org/files/ENCFF563UJS/@@download/ENCFF563UJS.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF834NNK bed narrowPeak optimal idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF047DWV, ENCFF106LTW, ENCFF338POR, ENCFF419RSJ 334235 ENCODE Processing Pipeline 8d861fcc2553739fba15789099250bb4 https://www.encodeproject.org/files/ENCFF834NNK/@@download/ENCFF834NNK.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF436KKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF834NNK 661031 ENCODE Processing Pipeline e18b91913c6415a0227ec72b4632db69 https://www.encodeproject.org/files/ENCFF436KKJ/@@download/ENCFF436KKJ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF652VHE fastq reads ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 1 40 single-ended 298670842 Xiang-Dong Fu, UCSD 0fb46fb425ec33ff00378ca6c4e94b60 https://www.encodeproject.org/files/ENCFF652VHE/@@download/ENCFF652VHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF197MJX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF408WZC fastq reads ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 1 40 single-ended 326359302 Xiang-Dong Fu, UCSD 4504354d04a5f6f7403a541bf88934f3 https://www.encodeproject.org/files/ENCFF408WZC/@@download/ENCFF408WZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF011ZUM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF924UXY fastq reads ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 2 40 single-ended 1172490494 Xiang-Dong Fu, UCSD 0372e4b88092520f7ce1b1241c4bd2b7 https://www.encodeproject.org/files/ENCFF924UXY/@@download/ENCFF924UXY.fastq.gz Illumina HiSeq 2000 /files/ENCFF197MJX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF570VVZ fastq reads ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 2 40 single-ended 1351189091 Xiang-Dong Fu, UCSD 1d337a8e0589778bdd5954991689b9eb https://www.encodeproject.org/files/ENCFF570VVZ/@@download/ENCFF570VVZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF011ZUM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF444MGQ bam unfiltered alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF408WZC, ENCFF570VVZ, ENCFF643CGH 1727941823 ENCODE Processing Pipeline 47c846e30cc818e70374c98c75756f3b https://www.encodeproject.org/files/ENCFF444MGQ/@@download/ENCFF444MGQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF540JBC bam unfiltered alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF643CGH, ENCFF652VHE, ENCFF924UXY 1417797659 ENCODE Processing Pipeline 94f215206183fc42119a6eaf84734e99 https://www.encodeproject.org/files/ENCFF540JBC/@@download/ENCFF540JBC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF490QZJ bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF643CGH, ENCFF652VHE, ENCFF924UXY 340471484 ENCODE Processing Pipeline dededee6adcdb467ab0c2eb0dacda1f6 https://www.encodeproject.org/files/ENCFF490QZJ/@@download/ENCFF490QZJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF774URE bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF408WZC, ENCFF570VVZ, ENCFF643CGH 690921036 ENCODE Processing Pipeline 6e2f63170f5b24c2258404dbef64a737 https://www.encodeproject.org/files/ENCFF774URE/@@download/ENCFF774URE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF333FNS bigWig signal p-value ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF490QZJ 479446957 ENCODE Processing Pipeline 9a51d269858ebd9e3a1f31d3450eb307 https://www.encodeproject.org/files/ENCFF333FNS/@@download/ENCFF333FNS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF686SQQ bigWig signal p-value ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF774URE 666048708 ENCODE Processing Pipeline dfb72f7644324d87c1cd00ff90112fe5 https://www.encodeproject.org/files/ENCFF686SQQ/@@download/ENCFF686SQQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF759NLF bigWig signal p-value ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF490QZJ, ENCFF774URE 991622661 ENCODE Processing Pipeline b0685d86d9ac231536583ab2e46c7224 https://www.encodeproject.org/files/ENCFF759NLF/@@download/ENCFF759NLF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF424EUW bigWig fold change over control ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF490QZJ 227314445 ENCODE Processing Pipeline 441e5bf40ae0bff8785cfc174269cf27 https://www.encodeproject.org/files/ENCFF424EUW/@@download/ENCFF424EUW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF415MSN bigWig fold change over control ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF774URE 378205733 ENCODE Processing Pipeline 3bad485c10cae5bf83ac959630a446b3 https://www.encodeproject.org/files/ENCFF415MSN/@@download/ENCFF415MSN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF813YZR bigWig fold change over control ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF490QZJ, ENCFF774URE 715248178 ENCODE Processing Pipeline 60ab8c51d27a0fb0e19f812e8a87f2a9 https://www.encodeproject.org/files/ENCFF813YZR/@@download/ENCFF813YZR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF849RZK bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF490QZJ, ENCFF774URE 6605548 ENCODE Processing Pipeline 0cee42661438d4bf8282f70da5c17468 https://www.encodeproject.org/files/ENCFF849RZK/@@download/ENCFF849RZK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF714JWD bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF490QZJ 4004929 ENCODE Processing Pipeline d94bcd9531de793833c6235a4a8ecb02 https://www.encodeproject.org/files/ENCFF714JWD/@@download/ENCFF714JWD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF940WDW bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF774URE 5536076 ENCODE Processing Pipeline 0a6f85277a89c3ba9c6f89c06387597c https://www.encodeproject.org/files/ENCFF940WDW/@@download/ENCFF940WDW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF669YFC bigBed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF940WDW 13183447 ENCODE Processing Pipeline 55cb739ee9b9b1b7d51bfd3a0d18e864 https://www.encodeproject.org/files/ENCFF669YFC/@@download/ENCFF669YFC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF077RDY bigBed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF714JWD 9044830 ENCODE Processing Pipeline 92c618fa8be9f1d5721d1e52fbb329d1 https://www.encodeproject.org/files/ENCFF077RDY/@@download/ENCFF077RDY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF697OIL bigBed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF849RZK 13219138 ENCODE Processing Pipeline b34886dc3752e60f2dffd81a976c476f https://www.encodeproject.org/files/ENCFF697OIL/@@download/ENCFF697OIL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF615DJU bed narrowPeak conservative idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF714JWD, ENCFF849RZK, ENCFF940WDW 12740 ENCODE Processing Pipeline 31ca680e191b82e84b3ed3e55b72ef25 https://www.encodeproject.org/files/ENCFF615DJU/@@download/ENCFF615DJU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF105XWO bed narrowPeak optimal idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF714JWD, ENCFF849RZK, ENCFF940WDW 17022 ENCODE Processing Pipeline d155d60b73a6942bc89bffec7697fd05 https://www.encodeproject.org/files/ENCFF105XWO/@@download/ENCFF105XWO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF861QTY bigBed narrowPeak optimal idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF105XWO 82499 ENCODE Processing Pipeline 176c2cd4943dbe356d8318cf190692b3 https://www.encodeproject.org/files/ENCFF861QTY/@@download/ENCFF861QTY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF301RXW bigBed narrowPeak conservative idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF615DJU 74489 ENCODE Processing Pipeline f87d6a4a77c742b9a5ac205eb4948bf9 https://www.encodeproject.org/files/ENCFF301RXW/@@download/ENCFF301RXW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF826DAL bam unfiltered alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF408WZC, ENCFF570VVZ, ENCFF807MUK 1718850424 ENCODE Processing Pipeline 5ce876b737970e29d05d366fcea17aa4 https://www.encodeproject.org/files/ENCFF826DAL/@@download/ENCFF826DAL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF807AVS bam unfiltered alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF652VHE, ENCFF807MUK, ENCFF924UXY 1410562603 ENCODE Processing Pipeline 4031e4e7104a63e436c610061e5d8592 https://www.encodeproject.org/files/ENCFF807AVS/@@download/ENCFF807AVS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF332BZZ bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF652VHE, ENCFF807MUK, ENCFF924UXY 340807983 ENCODE Processing Pipeline 75528f344803c79294d728bb7fd10fbc https://www.encodeproject.org/files/ENCFF332BZZ/@@download/ENCFF332BZZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF534BBH bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF408WZC, ENCFF570VVZ, ENCFF807MUK 691419130 ENCODE Processing Pipeline 806d42230b87592cabda5c92f6d549f1 https://www.encodeproject.org/files/ENCFF534BBH/@@download/ENCFF534BBH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF697LIJ bigWig signal p-value ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF154PCC, ENCFF332BZZ 488661371 ENCODE Processing Pipeline a8f84488dcf323f05ba1dd4c5829f1e4 https://www.encodeproject.org/files/ENCFF697LIJ/@@download/ENCFF697LIJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF047AMP bigWig signal p-value ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF096KCE, ENCFF154PCC, ENCFF332BZZ, ENCFF534BBH 939640038 ENCODE Processing Pipeline ff85fc5583309db73e7e9af128c88743 https://www.encodeproject.org/files/ENCFF047AMP/@@download/ENCFF047AMP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF014JSQ bigWig fold change over control ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF154PCC, ENCFF332BZZ 222969059 ENCODE Processing Pipeline d2cf409f9ffb4630966d05936dbde865 https://www.encodeproject.org/files/ENCFF014JSQ/@@download/ENCFF014JSQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF468XEP bigWig signal p-value ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF096KCE, ENCFF534BBH 537110599 ENCODE Processing Pipeline 7f2db4d4edc7ca360df93830ee0a414a https://www.encodeproject.org/files/ENCFF468XEP/@@download/ENCFF468XEP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF405TRF bigWig fold change over control ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF096KCE, ENCFF534BBH 374304465 ENCODE Processing Pipeline 40eefd1eb065ad75c50ed450e70f9689 https://www.encodeproject.org/files/ENCFF405TRF/@@download/ENCFF405TRF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF697WEU bigWig fold change over control ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF096KCE, ENCFF154PCC, ENCFF332BZZ, ENCFF534BBH 716038175 ENCODE Processing Pipeline 7b72710619b688e8feb98d83ea15cc9d https://www.encodeproject.org/files/ENCFF697WEU/@@download/ENCFF697WEU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF375IKN bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF096KCE, ENCFF534BBH 5532763 ENCODE Processing Pipeline 8895fe65a5a28bf6f135f6176109f8cb https://www.encodeproject.org/files/ENCFF375IKN/@@download/ENCFF375IKN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF500JKK bigBed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF375IKN 13167746 ENCODE Processing Pipeline 3b00329b942e9e683df3ae3caf0ea5b9 https://www.encodeproject.org/files/ENCFF500JKK/@@download/ENCFF500JKK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF771KFA bigBed narrowPeak conservative idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF284HXN 72861 ENCODE Processing Pipeline cdfa129075a25d7aa36f83fc3c39a67c https://www.encodeproject.org/files/ENCFF771KFA/@@download/ENCFF771KFA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF083ZXX bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF154PCC, ENCFF332BZZ 4775730 ENCODE Processing Pipeline 5e3ccb537871f6c3ba6b26cb0ec1d720 https://www.encodeproject.org/files/ENCFF083ZXX/@@download/ENCFF083ZXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF302DUJ bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF096KCE, ENCFF154PCC, ENCFF332BZZ, ENCFF534BBH 6686363 ENCODE Processing Pipeline d14487c4535c899efe0d359d66ea093a https://www.encodeproject.org/files/ENCFF302DUJ/@@download/ENCFF302DUJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF712VDD bigBed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF083ZXX 12050843 ENCODE Processing Pipeline 2ea2a421d5e6182750366fe538769581 https://www.encodeproject.org/files/ENCFF712VDD/@@download/ENCFF712VDD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF587VAQ bigBed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF302DUJ 13198906 ENCODE Processing Pipeline 43a6665357f24bdf64087112e4a835db https://www.encodeproject.org/files/ENCFF587VAQ/@@download/ENCFF587VAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF868WXR bed narrowPeak optimal idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF083ZXX, ENCFF302DUJ, ENCFF375IKN 17486 ENCODE Processing Pipeline 0d5603c909e43cb2fdfc713362a57425 https://www.encodeproject.org/files/ENCFF868WXR/@@download/ENCFF868WXR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF284HXN bed narrowPeak conservative idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF083ZXX, ENCFF302DUJ, ENCFF375IKN 12250 ENCODE Processing Pipeline 1f1e0f0fa8ea6b04a185f50dd80cd96d https://www.encodeproject.org/files/ENCFF284HXN/@@download/ENCFF284HXN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF822DEN bigBed narrowPeak optimal idr thresholded peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF868WXR 81733 ENCODE Processing Pipeline 6bc6e76296041fe88f552d413c1ee20e https://www.encodeproject.org/files/ENCFF822DEN/@@download/ENCFF822DEN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF062BXI bam unfiltered alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 100 ENCFF544FRM, ENCFF807MUK, ENCFF866MDO 5826811480 ENCODE Processing Pipeline 0a0d349c0e3bc7dc3d8d91982c9443ca https://www.encodeproject.org/files/ENCFF062BXI/@@download/ENCFF062BXI.bam hg19 released ENCFF727GFQ bam unfiltered alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 100 ENCFF461TIJ, ENCFF769JRE, ENCFF807MUK 5838692852 ENCODE Processing Pipeline 9a5f0a7c3e41df8fccfd0d2ea8072f78 https://www.encodeproject.org/files/ENCFF727GFQ/@@download/ENCFF727GFQ.bam hg19 released ENCFF461TIJ fastq reads ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 1 100 paired-ended 1 ENCFF769JRE 2633372210 Michael Snyder, Stanford 6484fac6345a443787d3964b74868994 SRA:SRR5111885 https://www.encodeproject.org/files/ENCFF461TIJ/@@download/ENCFF461TIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF769JRE fastq reads ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 1 100 paired-ended 2 ENCFF461TIJ 2717748429 Michael Snyder, Stanford 4f029ffe226c30a87cb7884f98d264a7 SRA:SRR5111885 https://www.encodeproject.org/files/ENCFF769JRE/@@download/ENCFF769JRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF544FRM fastq reads ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 1 100 paired-ended 1 ENCFF866MDO 2712981007 Michael Snyder, Stanford 82dc5df3db651af01bc21292d3ae2514 SRA:SRR5111884 https://www.encodeproject.org/files/ENCFF544FRM/@@download/ENCFF544FRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF866MDO fastq reads ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 1 100 paired-ended 2 ENCFF544FRM 2618747778 Michael Snyder, Stanford ff594fd3fcde02429de1107bc75b5e9b SRA:SRR5111884 https://www.encodeproject.org/files/ENCFF866MDO/@@download/ENCFF866MDO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF678DEO bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 100 ENCFF544FRM, ENCFF807MUK, ENCFF866MDO 4993100531 ENCODE Processing Pipeline da5585c951d9e1fba9ce0dd689518eb8 https://www.encodeproject.org/files/ENCFF678DEO/@@download/ENCFF678DEO.bam hg19 released ENCFF630HPE bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 100 ENCFF461TIJ, ENCFF769JRE, ENCFF807MUK 4993070040 ENCODE Processing Pipeline 7e7c38b208625c627cb61a5ea29ef663 https://www.encodeproject.org/files/ENCFF630HPE/@@download/ENCFF630HPE.bam hg19 released ENCFF444XHI bam unfiltered alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 100 ENCFF544FRM, ENCFF643CGH, ENCFF866MDO 5837023055 ENCODE Processing Pipeline 7069832acd3f862f7dd7d0b6b7780421 https://www.encodeproject.org/files/ENCFF444XHI/@@download/ENCFF444XHI.bam GRCh38 released ENCFF860QRS bam unfiltered alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 100 ENCFF461TIJ, ENCFF643CGH, ENCFF769JRE 5849148770 ENCODE Processing Pipeline 3ab0ebd3c68b6980b2b97862bc5ed0c6 https://www.encodeproject.org/files/ENCFF860QRS/@@download/ENCFF860QRS.bam GRCh38 released ENCFF800UBL bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 100 ENCFF461TIJ, ENCFF643CGH, ENCFF769JRE 5001360714 ENCODE Processing Pipeline db71ddf7e681afbd7dd27d7bb90d1f82 https://www.encodeproject.org/files/ENCFF800UBL/@@download/ENCFF800UBL.bam GRCh38 released ENCFF095VQR bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 100 ENCFF544FRM, ENCFF643CGH, ENCFF866MDO 5001312247 ENCODE Processing Pipeline a2700ae0b5cb9af509f64f7cd3df6619 https://www.encodeproject.org/files/ENCFF095VQR/@@download/ENCFF095VQR.bam GRCh38 released ENCFF730LJL bigWig signal p-value ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF095VQR, ENCFF426RDP 952926777 ENCODE Processing Pipeline 816fabf839f37523ea0801a619eb4947 https://www.encodeproject.org/files/ENCFF730LJL/@@download/ENCFF730LJL.bigWig GRCh38 released ENCFF077CNQ bigWig signal p-value ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF291AFY, ENCFF800UBL 1096553838 ENCODE Processing Pipeline 7f62f938416cd847467efc2eea681460 https://www.encodeproject.org/files/ENCFF077CNQ/@@download/ENCFF077CNQ.bigWig GRCh38 released ENCFF217HUK bigWig signal p-value ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF095VQR, ENCFF291AFY, ENCFF426RDP, ENCFF800UBL 1954591977 ENCODE Processing Pipeline 75ce3f47bddfefc52693ac331b705e4d https://www.encodeproject.org/files/ENCFF217HUK/@@download/ENCFF217HUK.bigWig GRCh38 released ENCFF796AYK bigWig fold change over control ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF095VQR, ENCFF426RDP 1163731247 ENCODE Processing Pipeline 8598b551be44c32b93af25c575270cf4 https://www.encodeproject.org/files/ENCFF796AYK/@@download/ENCFF796AYK.bigWig GRCh38 released ENCFF777WVW bigWig fold change over control ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF291AFY, ENCFF800UBL 1243477658 ENCODE Processing Pipeline d3c1cdab8417c59445366dd427cb6624 https://www.encodeproject.org/files/ENCFF777WVW/@@download/ENCFF777WVW.bigWig GRCh38 released ENCFF396IQS bigWig fold change over control ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF095VQR, ENCFF291AFY, ENCFF426RDP, ENCFF800UBL 2171150287 ENCODE Processing Pipeline 8cead220097a04e768b28e3af0eb1ff0 https://www.encodeproject.org/files/ENCFF396IQS/@@download/ENCFF396IQS.bigWig GRCh38 released ENCFF463NGP bigBed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF643DCV 13377357 ENCODE Processing Pipeline db0b67f922e65858d589b35878bd984e https://www.encodeproject.org/files/ENCFF463NGP/@@download/ENCFF463NGP.bigBed GRCh38 released ENCFF643DCV bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF095VQR, ENCFF426RDP 6670817 ENCODE Processing Pipeline 6cbbc01e3a92c5e07c17a5d669746687 https://www.encodeproject.org/files/ENCFF643DCV/@@download/ENCFF643DCV.bed.gz GRCh38 released ENCFF206LVZ bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF291AFY, ENCFF800UBL 6612111 ENCODE Processing Pipeline def1aaea3e3b65eeba77bf4462264b8a https://www.encodeproject.org/files/ENCFF206LVZ/@@download/ENCFF206LVZ.bed.gz GRCh38 released ENCFF872ANF bigBed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF206LVZ 13424253 ENCODE Processing Pipeline 1e97f8d7b10d446f0b93522651bcd1de https://www.encodeproject.org/files/ENCFF872ANF/@@download/ENCFF872ANF.bigBed GRCh38 released ENCFF770MJF bigBed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF598JNV 13468426 ENCODE Processing Pipeline 8ceefce65c003886a5d051a6fce4ede1 https://www.encodeproject.org/files/ENCFF770MJF/@@download/ENCFF770MJF.bigBed GRCh38 released ENCFF345ALQ bed narrowPeak conservative idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF206LVZ, ENCFF419RSJ, ENCFF598JNV, ENCFF643DCV 395485 ENCODE Processing Pipeline 713b4c6033b3d08aedb9655e6f99aa61 https://www.encodeproject.org/files/ENCFF345ALQ/@@download/ENCFF345ALQ.bed.gz GRCh38 released ENCFF833DCA bigBed narrowPeak conservative idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF345ALQ 719780 ENCODE Processing Pipeline b5840c92773bfd28fd9d80196f27ba61 https://www.encodeproject.org/files/ENCFF833DCA/@@download/ENCFF833DCA.bigBed GRCh38 released ENCFF598JNV bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF095VQR, ENCFF291AFY, ENCFF426RDP, ENCFF800UBL 7239723 ENCODE Processing Pipeline 82e34f1c282e044569172669dbd2ea70 https://www.encodeproject.org/files/ENCFF598JNV/@@download/ENCFF598JNV.bed.gz GRCh38 released ENCFF456MGR bed narrowPeak optimal idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF206LVZ, ENCFF419RSJ, ENCFF598JNV, ENCFF643DCV 586173 ENCODE Processing Pipeline 2c77bdb7ecac1fa47704c6b9b8a01706 https://www.encodeproject.org/files/ENCFF456MGR/@@download/ENCFF456MGR.bed.gz GRCh38 released ENCFF210BIC bigBed narrowPeak optimal idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF456MGR 1201542 ENCODE Processing Pipeline 764b7fd30c3e651249b7fb1d30294b5f https://www.encodeproject.org/files/ENCFF210BIC/@@download/ENCFF210BIC.bigBed GRCh38 released ENCFF229VBI bigWig fold change over control ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF583FAG, ENCFF678DEO 1156719077 ENCODE Processing Pipeline 39a5941397b9d5f9485fcf6dbda4e29b https://www.encodeproject.org/files/ENCFF229VBI/@@download/ENCFF229VBI.bigWig hg19 released ENCFF623HIV bigWig signal p-value ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF583FAG, ENCFF678DEO 1072825089 ENCODE Processing Pipeline fb07bd87c7de95e65bbb65c0391d63d6 https://www.encodeproject.org/files/ENCFF623HIV/@@download/ENCFF623HIV.bigWig hg19 released ENCFF578NKH bigWig signal p-value ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF630HPE, ENCFF678DEO 1934392132 ENCODE Processing Pipeline b4c997b54914757496319ea3c6c73587 https://www.encodeproject.org/files/ENCFF578NKH/@@download/ENCFF578NKH.bigWig hg19 released ENCFF816BOT bigWig signal p-value ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF049MPQ, ENCFF630HPE 1232218514 ENCODE Processing Pipeline fa1fa8ec60d319601af28e3aa7a618e1 https://www.encodeproject.org/files/ENCFF816BOT/@@download/ENCFF816BOT.bigWig hg19 released ENCFF644WLW bigWig fold change over control ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF049MPQ, ENCFF630HPE 1279345139 ENCODE Processing Pipeline 99e7cd1f696e2707970de2f6bb972b06 https://www.encodeproject.org/files/ENCFF644WLW/@@download/ENCFF644WLW.bigWig hg19 released ENCFF890VHF bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF049MPQ, ENCFF630HPE 6593313 ENCODE Processing Pipeline b92e64a443c81bb6279e6a299af35052 https://www.encodeproject.org/files/ENCFF890VHF/@@download/ENCFF890VHF.bed.gz hg19 released ENCFF292MLG bigBed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF941VDL 13491107 ENCODE Processing Pipeline d813b27b118e88598907a1b928d710ce https://www.encodeproject.org/files/ENCFF292MLG/@@download/ENCFF292MLG.bigBed hg19 released ENCFF429NXB bigBed narrowPeak conservative idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF765NKE 899823 ENCODE Processing Pipeline 19869a4d9149ff1d9abd322f1ec5bb5b https://www.encodeproject.org/files/ENCFF429NXB/@@download/ENCFF429NXB.bigBed hg19 released ENCFF321BDO bigWig fold change over control ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF630HPE, ENCFF678DEO 2130261469 ENCODE Processing Pipeline 4dbdc7cb8694bf428353bb0241f629ae https://www.encodeproject.org/files/ENCFF321BDO/@@download/ENCFF321BDO.bigWig hg19 released ENCFF922CFN bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF583FAG, ENCFF678DEO 6652068 ENCODE Processing Pipeline 022c23594bf8b149ec691c1c27b42169 https://www.encodeproject.org/files/ENCFF922CFN/@@download/ENCFF922CFN.bed.gz hg19 released ENCFF609IAX bigBed narrowPeak optimal idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF785ZQF 1206628 ENCODE Processing Pipeline 6423af02b5a68355a0757c8fcc8a6932 https://www.encodeproject.org/files/ENCFF609IAX/@@download/ENCFF609IAX.bigBed hg19 released ENCFF785ZQF bed narrowPeak optimal idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF001TDO, ENCFF890VHF, ENCFF922CFN, ENCFF941VDL 592985 ENCODE Processing Pipeline 643de89c03671376dce833c8c354adf7 https://www.encodeproject.org/files/ENCFF785ZQF/@@download/ENCFF785ZQF.bed.gz hg19 released ENCFF941VDL bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF630HPE, ENCFF678DEO 7249759 ENCODE Processing Pipeline c40f28430c3c7878b1f8854eff35c147 https://www.encodeproject.org/files/ENCFF941VDL/@@download/ENCFF941VDL.bed.gz hg19 released ENCFF258NUE bigBed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF922CFN 13352329 ENCODE Processing Pipeline 875338d7e04fcf66e12a03b9b03870a9 https://www.encodeproject.org/files/ENCFF258NUE/@@download/ENCFF258NUE.bigBed hg19 released ENCFF324ZWE bigBed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF890VHF 13443638 ENCODE Processing Pipeline f63f16374e4b4a6a495d9a2b03e711da https://www.encodeproject.org/files/ENCFF324ZWE/@@download/ENCFF324ZWE.bigBed hg19 released ENCFF765NKE bed narrowPeak conservative idr thresholded peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF001TDO, ENCFF890VHF, ENCFF922CFN, ENCFF941VDL 401955 ENCODE Processing Pipeline f3bbe5cb2edb60f6b4e63e697347ca2b https://www.encodeproject.org/files/ENCFF765NKE/@@download/ENCFF765NKE.bed.gz hg19 released ENCFF987TDP fastq reads ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 1 40 single-ended 665997713 Xiang-Dong Fu, UCSD cc598ef006765a2b71fe7e8002e71b6b https://www.encodeproject.org/files/ENCFF987TDP/@@download/ENCFF987TDP.fastq.gz Illumina HiSeq 2000 /files/ENCFF292SYX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF988VYU fastq reads ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 1 40 single-ended 832897585 Xiang-Dong Fu, UCSD 10c50aa3bee573bd6618834434d174c6 https://www.encodeproject.org/files/ENCFF988VYU/@@download/ENCFF988VYU.fastq.gz Illumina HiSeq 2000 /files/ENCFF887XCD/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF292YCO bam unfiltered alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF643CGH, ENCFF987TDP 858352131 ENCODE Processing Pipeline a84929123519299fecff3e0d2528ab1c https://www.encodeproject.org/files/ENCFF292YCO/@@download/ENCFF292YCO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF937LJU bam unfiltered alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF643CGH, ENCFF988VYU 1056321483 ENCODE Processing Pipeline b98d5234c81a3ea923339b277c32dd0a https://www.encodeproject.org/files/ENCFF937LJU/@@download/ENCFF937LJU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF275TIK bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF643CGH, ENCFF987TDP 520166932 ENCODE Processing Pipeline 3239461a2d18031506a90becb0b7a2ee https://www.encodeproject.org/files/ENCFF275TIK/@@download/ENCFF275TIK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF574ZKW bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF643CGH, ENCFF988VYU 590339369 ENCODE Processing Pipeline cf053b289a77330bfa64c51d41042a62 https://www.encodeproject.org/files/ENCFF574ZKW/@@download/ENCFF574ZKW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF328GBF bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF807MUK, ENCFF987TDP 520767011 ENCODE Processing Pipeline 2f4b8abda62140097fece3054236eb28 https://www.encodeproject.org/files/ENCFF328GBF/@@download/ENCFF328GBF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF520SUX bam unfiltered alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF807MUK, ENCFF987TDP 857533180 ENCODE Processing Pipeline 8efdec6cc2b454dfb6995ac9a39b5d5d https://www.encodeproject.org/files/ENCFF520SUX/@@download/ENCFF520SUX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF940NHX bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF807MUK, ENCFF988VYU 591017105 ENCODE Processing Pipeline 594b5f3c3a1fdd7ce4d53952d06d86d4 https://www.encodeproject.org/files/ENCFF940NHX/@@download/ENCFF940NHX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF348BZV bam unfiltered alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF807MUK, ENCFF988VYU 1055359727 ENCODE Processing Pipeline 4ff11dea18e83964653515d0406c4acd https://www.encodeproject.org/files/ENCFF348BZV/@@download/ENCFF348BZV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF360QQU bigWig fold change over control ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF275TIK, ENCFF450GNQ, ENCFF574ZKW, ENCFF901YVZ 517694807 ENCODE Processing Pipeline b39d2419570233ec57fde87fec6b0cf2 https://www.encodeproject.org/files/ENCFF360QQU/@@download/ENCFF360QQU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF589AEQ bigWig fold change over control ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF450GNQ, ENCFF574ZKW, ENCFF901YVZ 331782224 ENCODE Processing Pipeline c46ab6f8821f09852112e0027258436a https://www.encodeproject.org/files/ENCFF589AEQ/@@download/ENCFF589AEQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF758QFH bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF450GNQ, ENCFF574ZKW, ENCFF901YVZ 7011573 ENCODE Processing Pipeline 6befca63474294e407fdfa728fe7d326 https://www.encodeproject.org/files/ENCFF758QFH/@@download/ENCFF758QFH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF853WQF bigBed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF905HJA 11622962 ENCODE Processing Pipeline 696eba85553506e289aa098b42e15276 https://www.encodeproject.org/files/ENCFF853WQF/@@download/ENCFF853WQF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF266CLR bigBed narrowPeak conservative idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF217BFK 1686815 ENCODE Processing Pipeline 1a1ff4c69da8afb12cfe85cf94ebc988 https://www.encodeproject.org/files/ENCFF266CLR/@@download/ENCFF266CLR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF567XFA bigWig signal p-value ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF275TIK, ENCFF450GNQ, ENCFF901YVZ 711622703 ENCODE Processing Pipeline bc1d8e812f65a7565b4bf340e8c36d9c https://www.encodeproject.org/files/ENCFF567XFA/@@download/ENCFF567XFA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF217BFK bed narrowPeak conservative idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF242XTM, ENCFF419RSJ, ENCFF758QFH, ENCFF905HJA 787814 ENCODE Processing Pipeline 6b53b52d5607283061961b4486c24cd0 https://www.encodeproject.org/files/ENCFF217BFK/@@download/ENCFF217BFK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF236KRZ bigWig signal p-value ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF450GNQ, ENCFF574ZKW, ENCFF901YVZ 686329056 ENCODE Processing Pipeline 2fd276b3d01eb64588dfefb840bdb8f0 https://www.encodeproject.org/files/ENCFF236KRZ/@@download/ENCFF236KRZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF973HFC bigBed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF242XTM 11087729 ENCODE Processing Pipeline 5be74876d3408f0c2e97b4b4b068df7c https://www.encodeproject.org/files/ENCFF973HFC/@@download/ENCFF973HFC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF866RDH bigWig fold change over control ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF275TIK, ENCFF450GNQ, ENCFF901YVZ 315137490 ENCODE Processing Pipeline fb0facd5d6026ba3a0ded78c823b1aff https://www.encodeproject.org/files/ENCFF866RDH/@@download/ENCFF866RDH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF856TZN bigWig signal p-value ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF275TIK, ENCFF450GNQ, ENCFF574ZKW, ENCFF901YVZ 829358298 ENCODE Processing Pipeline dac6124cd59be1438ecfa3e34b5054ea https://www.encodeproject.org/files/ENCFF856TZN/@@download/ENCFF856TZN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF754JXF bigBed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF758QFH 11370448 ENCODE Processing Pipeline 59361112b7c67acf6296dc9b2819a2eb https://www.encodeproject.org/files/ENCFF754JXF/@@download/ENCFF754JXF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF551IJP bed narrowPeak optimal idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF242XTM, ENCFF419RSJ, ENCFF758QFH, ENCFF905HJA 806387 ENCODE Processing Pipeline e47f380ae504af00478199353486645a https://www.encodeproject.org/files/ENCFF551IJP/@@download/ENCFF551IJP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF241AEG bigBed narrowPeak optimal idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF551IJP 1718621 ENCODE Processing Pipeline 2726de8d829731e682807d44a3cca180 https://www.encodeproject.org/files/ENCFF241AEG/@@download/ENCFF241AEG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF905HJA bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF275TIK, ENCFF450GNQ, ENCFF901YVZ 7112076 ENCODE Processing Pipeline a76bfd872ea681c1fc0b424186f41d69 https://www.encodeproject.org/files/ENCFF905HJA/@@download/ENCFF905HJA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF242XTM bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF275TIK, ENCFF450GNQ, ENCFF574ZKW, ENCFF901YVZ 6928657 ENCODE Processing Pipeline 3e01efdfa8e9dd7b0e260fbe51fd060f https://www.encodeproject.org/files/ENCFF242XTM/@@download/ENCFF242XTM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF193HJC bigWig fold change over control ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO 314207608 ENCODE Processing Pipeline 63994411edb93b6254e9a58e5133eddc https://www.encodeproject.org/files/ENCFF193HJC/@@download/ENCFF193HJC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF738NEB bigWig fold change over control ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 331857479 ENCODE Processing Pipeline 595e6fd69a8ef269883c8dddb07cc237 https://www.encodeproject.org/files/ENCFF738NEB/@@download/ENCFF738NEB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF316BHA bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO 7134554 ENCODE Processing Pipeline 8526df6af7cb66062cdd3d8ca5a983b0 https://www.encodeproject.org/files/ENCFF316BHA/@@download/ENCFF316BHA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF273BUG bigBed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF316BHA 11616986 ENCODE Processing Pipeline 8c10f989f5c23538a03da777fbffde08 https://www.encodeproject.org/files/ENCFF273BUG/@@download/ENCFF273BUG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF617WDA bigBed narrowPeak conservative idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF733YFT 1682182 ENCODE Processing Pipeline 1ededdf69b93cd194891a4c1a9fb74d5 https://www.encodeproject.org/files/ENCFF617WDA/@@download/ENCFF617WDA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF565FWV bigWig signal p-value ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO 768357912 ENCODE Processing Pipeline 1de91244e7eb6999729e50b2facfc21f https://www.encodeproject.org/files/ENCFF565FWV/@@download/ENCFF565FWV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF737QPD bigBed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF559FAT 11366733 ENCODE Processing Pipeline a6987a2e5f88cdaf7a8771f10d612ca1 https://www.encodeproject.org/files/ENCFF737QPD/@@download/ENCFF737QPD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF680VQA bigBed narrowPeak optimal idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF259XQC 1707966 ENCODE Processing Pipeline 392a3be44ec75ade7ff9733150454d65 https://www.encodeproject.org/files/ENCFF680VQA/@@download/ENCFF680VQA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF121KGM bigWig signal p-value ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 800335296 ENCODE Processing Pipeline 928cfd362829afdec3b9533a8c402277 https://www.encodeproject.org/files/ENCFF121KGM/@@download/ENCFF121KGM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF420YOK bigWig fold change over control ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 518394398 ENCODE Processing Pipeline 1034f77675d72161dc73bba906e7c1a2 https://www.encodeproject.org/files/ENCFF420YOK/@@download/ENCFF420YOK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF559FAT bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 7012416 ENCODE Processing Pipeline 70cede5e9984baa825020a0a6cd1f2f7 https://www.encodeproject.org/files/ENCFF559FAT/@@download/ENCFF559FAT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF181QCC bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 6928723 ENCODE Processing Pipeline d29df5a40ea17f3196dd216c61d1cdd5 https://www.encodeproject.org/files/ENCFF181QCC/@@download/ENCFF181QCC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF733YFT bed narrowPeak conservative idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF001TDO, ENCFF181QCC, ENCFF316BHA, ENCFF559FAT 786231 ENCODE Processing Pipeline 5fe98686bede5f2d86af19f415d7689b https://www.encodeproject.org/files/ENCFF733YFT/@@download/ENCFF733YFT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF159WSY bigWig signal p-value ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 733455573 ENCODE Processing Pipeline 27e8be53737c2e5c268391eff0d78233 https://www.encodeproject.org/files/ENCFF159WSY/@@download/ENCFF159WSY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF914QRR bigBed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF181QCC 11087262 ENCODE Processing Pipeline 6167c3dbf7d4eb92b2dcaba55882e93b https://www.encodeproject.org/files/ENCFF914QRR/@@download/ENCFF914QRR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF259XQC bed narrowPeak optimal idr thresholded peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF001TDO, ENCFF181QCC, ENCFF316BHA, ENCFF559FAT 800885 ENCODE Processing Pipeline 11427dcba68621b570fb442d68314a13 https://www.encodeproject.org/files/ENCFF259XQC/@@download/ENCFF259XQC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF233HVB fastq reads ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 1 100 paired-ended 1 ENCFF778PUP 1866602337 Michael Snyder, Stanford dc72b22237dc2a7be43a30d43c4e9b87 SRA:SRR5112074 https://www.encodeproject.org/files/ENCFF233HVB/@@download/ENCFF233HVB.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF491EOP fastq reads ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 1 100 paired-ended 2 ENCFF960PEL 3618726318 Michael Snyder, Stanford 95b9e99f443d37f11be941d043d1e027 SRA:SRR5112073 https://www.encodeproject.org/files/ENCFF491EOP/@@download/ENCFF491EOP.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF960PEL fastq reads ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 1 100 paired-ended 1 ENCFF491EOP 3257514616 Michael Snyder, Stanford cc94abd92307f91475d2b43a07f70ecd SRA:SRR5112073 https://www.encodeproject.org/files/ENCFF960PEL/@@download/ENCFF960PEL.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF778PUP fastq reads ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 1 100 paired-ended 2 ENCFF233HVB 2069760994 Michael Snyder, Stanford c47ee9fb4204ae557acd3b7af316e217 SRA:SRR5112074 https://www.encodeproject.org/files/ENCFF778PUP/@@download/ENCFF778PUP.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF520QTI bam unfiltered alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 100 ENCFF233HVB, ENCFF643CGH, ENCFF778PUP 4004084868 ENCODE Processing Pipeline dfbb1c4dc619d2a9589c96130226480a https://www.encodeproject.org/files/ENCFF520QTI/@@download/ENCFF520QTI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF463UQC bam unfiltered alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 100 ENCFF233HVB, ENCFF778PUP, ENCFF807MUK 3998519100 ENCODE Processing Pipeline 0c48c1b2693fbe62f37fb9dd153e97d2 https://www.encodeproject.org/files/ENCFF463UQC/@@download/ENCFF463UQC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF653MWT bam unfiltered alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 100 ENCFF491EOP, ENCFF643CGH, ENCFF960PEL 6373146339 ENCODE Processing Pipeline 925366bb8b26c7450e8d5c7bd8330870 https://www.encodeproject.org/files/ENCFF653MWT/@@download/ENCFF653MWT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF240SIM bam unfiltered alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 100 ENCFF491EOP, ENCFF807MUK, ENCFF960PEL 6370170035 ENCODE Processing Pipeline d3dcb02fa9d8d3380564634db535aba7 https://www.encodeproject.org/files/ENCFF240SIM/@@download/ENCFF240SIM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF548YYR bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 100 ENCFF233HVB, ENCFF643CGH, ENCFF778PUP 3283055132 ENCODE Processing Pipeline 9d5e7efc78fbbb0645c7603b2b48f7a7 https://www.encodeproject.org/files/ENCFF548YYR/@@download/ENCFF548YYR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF712WEK bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 100 ENCFF233HVB, ENCFF778PUP, ENCFF807MUK 3280078269 ENCODE Processing Pipeline 07c5e8bdab58cd83a8daaebbfde5ad40 https://www.encodeproject.org/files/ENCFF712WEK/@@download/ENCFF712WEK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF066EHS bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 100 ENCFF491EOP, ENCFF807MUK, ENCFF960PEL 4313227770 ENCODE Processing Pipeline fb20ae7df16f48f9ee1d4f1cb80ee55f https://www.encodeproject.org/files/ENCFF066EHS/@@download/ENCFF066EHS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF566EXS bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 100 ENCFF491EOP, ENCFF643CGH, ENCFF960PEL 4316611671 ENCODE Processing Pipeline e9a7ae03e24cab5aa080d0b6be6ee9a4 https://www.encodeproject.org/files/ENCFF566EXS/@@download/ENCFF566EXS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF535VWM bigWig signal p-value ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF160VXC, ENCFF712WEK 982566481 ENCODE Processing Pipeline 9f30517ceb209778d90da752420e146d https://www.encodeproject.org/files/ENCFF535VWM/@@download/ENCFF535VWM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF971HJE bigWig signal p-value ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF066EHS, ENCFF834TUP 1142023750 ENCODE Processing Pipeline df65f303fc1a74479d308ff57d25220e https://www.encodeproject.org/files/ENCFF971HJE/@@download/ENCFF971HJE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF947SEG bigWig signal p-value ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF066EHS, ENCFF160VXC, ENCFF712WEK, ENCFF834TUP 1866499730 ENCODE Processing Pipeline a33417ad8ebda2dc0913095fa8830e5d https://www.encodeproject.org/files/ENCFF947SEG/@@download/ENCFF947SEG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF856KCV bigWig fold change over control ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF066EHS, ENCFF834TUP 1437133600 ENCODE Processing Pipeline 56007896865a94faab5418721d82a4cd https://www.encodeproject.org/files/ENCFF856KCV/@@download/ENCFF856KCV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF333HUK bigWig fold change over control ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF160VXC, ENCFF712WEK 1222635387 ENCODE Processing Pipeline 9ba08cb4a8a471a57a3dbcbead8919f6 https://www.encodeproject.org/files/ENCFF333HUK/@@download/ENCFF333HUK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF716WJE bigWig fold change over control ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF066EHS, ENCFF160VXC, ENCFF712WEK, ENCFF834TUP 2276451760 ENCODE Processing Pipeline da3a4f9f8f075f10bfd488132340947a https://www.encodeproject.org/files/ENCFF716WJE/@@download/ENCFF716WJE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF433ANO bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF066EHS, ENCFF834TUP 7144829 ENCODE Processing Pipeline fe359d4ff2dce87656e7ebd6b6d138ba https://www.encodeproject.org/files/ENCFF433ANO/@@download/ENCFF433ANO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF639RPL bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF066EHS, ENCFF160VXC, ENCFF712WEK, ENCFF834TUP 7251086 ENCODE Processing Pipeline 082aa1a21dc8e4ed61552495835dd97a https://www.encodeproject.org/files/ENCFF639RPL/@@download/ENCFF639RPL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF975UYT bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF160VXC, ENCFF712WEK 6769806 ENCODE Processing Pipeline 1d5437af2fa6db05277da419a4a3e02d https://www.encodeproject.org/files/ENCFF975UYT/@@download/ENCFF975UYT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF137RKC bigBed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF639RPL 12789509 ENCODE Processing Pipeline 4ef6fffe07eca2238113800deffde557 https://www.encodeproject.org/files/ENCFF137RKC/@@download/ENCFF137RKC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF372JYA bigBed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF433ANO 12866367 ENCODE Processing Pipeline a47653a23fd0960c292054c8d6e22299 https://www.encodeproject.org/files/ENCFF372JYA/@@download/ENCFF372JYA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF954LZI bigBed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF975UYT 12982156 ENCODE Processing Pipeline f3b9a9fa8cb1f1409e39814c582bcd09 https://www.encodeproject.org/files/ENCFF954LZI/@@download/ENCFF954LZI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF056MQX bed narrowPeak conservative idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF001TDO, ENCFF433ANO, ENCFF639RPL, ENCFF975UYT 34582 ENCODE Processing Pipeline b25af72a0a0f32331706d9b075e55983 https://www.encodeproject.org/files/ENCFF056MQX/@@download/ENCFF056MQX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF588OLK bed narrowPeak optimal idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF001TDO, ENCFF433ANO, ENCFF639RPL, ENCFF975UYT 59489 ENCODE Processing Pipeline 21ad5e41efc93bdc0af0f6d786d80664 https://www.encodeproject.org/files/ENCFF588OLK/@@download/ENCFF588OLK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF078MCN bigBed narrowPeak conservative idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF056MQX 127220 ENCODE Processing Pipeline 5caee75c74443a620e349c208db755ca https://www.encodeproject.org/files/ENCFF078MCN/@@download/ENCFF078MCN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF622VGH bigBed narrowPeak optimal idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF588OLK 168197 ENCODE Processing Pipeline 37d50d55b3b2e8b6f14deb350bdf7166 https://www.encodeproject.org/files/ENCFF622VGH/@@download/ENCFF622VGH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF967DYI bigWig signal p-value ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF566EXS, ENCFF712WXB 1466661989 ENCODE Processing Pipeline 971fb36165f789666c8d1c097f5cf79e https://www.encodeproject.org/files/ENCFF967DYI/@@download/ENCFF967DYI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF356KXG bigWig signal p-value ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF548YYR, ENCFF790TAN 1004058055 ENCODE Processing Pipeline 85c45cd582fd87149d2df4c0825e167b https://www.encodeproject.org/files/ENCFF356KXG/@@download/ENCFF356KXG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF319MYI bigWig signal p-value ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF548YYR, ENCFF566EXS, ENCFF712WXB, ENCFF790TAN 1861692438 ENCODE Processing Pipeline a9d9c09d7921c1c0ed72ec77d49a8827 https://www.encodeproject.org/files/ENCFF319MYI/@@download/ENCFF319MYI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF991FBH bigWig fold change over control ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF566EXS, ENCFF712WXB 1432644046 ENCODE Processing Pipeline 6a11dd3695a58ceef323373164d3502f https://www.encodeproject.org/files/ENCFF991FBH/@@download/ENCFF991FBH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF791SAZ bigWig fold change over control ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF548YYR, ENCFF790TAN 1204982710 ENCODE Processing Pipeline f9d88ba04d311aa9871a4dcda01e10cd https://www.encodeproject.org/files/ENCFF791SAZ/@@download/ENCFF791SAZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF681ZVH bigWig fold change over control ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF548YYR, ENCFF566EXS, ENCFF712WXB, ENCFF790TAN 2266477884 ENCODE Processing Pipeline 77cb5dab20defe4c7ed1ab5e5f6dbb01 https://www.encodeproject.org/files/ENCFF681ZVH/@@download/ENCFF681ZVH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF469MGU bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF548YYR, ENCFF566EXS, ENCFF712WXB, ENCFF790TAN 7250021 ENCODE Processing Pipeline 240a656325dee2867f0ecd8afff2a0e0 https://www.encodeproject.org/files/ENCFF469MGU/@@download/ENCFF469MGU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF821HLM bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF548YYR, ENCFF790TAN 6643297 ENCODE Processing Pipeline 37c2b74d0d2245710ffa2cc1d4d4b798 https://www.encodeproject.org/files/ENCFF821HLM/@@download/ENCFF821HLM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF129QWO bed narrowPeak conservative idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF469MGU, ENCFF821HLM, ENCFF964KTH 35013 ENCODE Processing Pipeline 3e35ed26efb21aa07e2847ba8095ebfe https://www.encodeproject.org/files/ENCFF129QWO/@@download/ENCFF129QWO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF964KTH bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF566EXS, ENCFF712WXB 7100368 ENCODE Processing Pipeline f57af245ccb8818ca69fc56985889588 https://www.encodeproject.org/files/ENCFF964KTH/@@download/ENCFF964KTH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF157ICW bigBed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF821HLM 12991449 ENCODE Processing Pipeline 1c6add449a57bd71ee0f0e89776724a8 https://www.encodeproject.org/files/ENCFF157ICW/@@download/ENCFF157ICW.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF735ZAO bigBed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF469MGU 12799015 ENCODE Processing Pipeline fce2b4d05788f5c1ef9551cad0411f4d https://www.encodeproject.org/files/ENCFF735ZAO/@@download/ENCFF735ZAO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF945HJR bed narrowPeak optimal idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF469MGU, ENCFF821HLM, ENCFF964KTH 56074 ENCODE Processing Pipeline 33f82cda31323b371851f3b446a0760f https://www.encodeproject.org/files/ENCFF945HJR/@@download/ENCFF945HJR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF143HZX bigBed narrowPeak optimal idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF945HJR 164330 ENCODE Processing Pipeline 89c8e9e9816f85cccf5cb3bcfa4fa6a9 https://www.encodeproject.org/files/ENCFF143HZX/@@download/ENCFF143HZX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF480RTG bigBed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF964KTH 12873076 ENCODE Processing Pipeline f8795744e9fa4f056fe1c3258d863c16 https://www.encodeproject.org/files/ENCFF480RTG/@@download/ENCFF480RTG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF494RZN bigBed narrowPeak conservative idr thresholded peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1, 2 ENCFF129QWO 128911 ENCODE Processing Pipeline e97ccee90b888cf3e2183f9400a263c2 https://www.encodeproject.org/files/ENCFF494RZN/@@download/ENCFF494RZN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF185NFH bam unfiltered alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF280GFD, ENCFF807MUK, ENCFF899IKW 4712313304 ENCODE Processing Pipeline 462b112e889e4c179963742f4736315e https://www.encodeproject.org/files/ENCFF185NFH/@@download/ENCFF185NFH.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF437PTI bam unfiltered alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF677RCM, ENCFF807MUK, ENCFF954WVJ 4205675976 ENCODE Processing Pipeline a70ae21138fe1d8705bb863e995b2b14 https://www.encodeproject.org/files/ENCFF437PTI/@@download/ENCFF437PTI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF954WVJ fastq reads ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF677RCM 1941634939 Michael Snyder, Stanford 48ffb9f4097a196342b821622ecf4d80 SRA:SRR5112435 https://www.encodeproject.org/files/ENCFF954WVJ/@@download/ENCFF954WVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF677RCM fastq reads ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF954WVJ 1974112198 Michael Snyder, Stanford 40ee0c3a3032f9c292822ad3bbd8f4b3 SRA:SRR5112435 https://www.encodeproject.org/files/ENCFF677RCM/@@download/ENCFF677RCM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF899IKW fastq reads ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF280GFD 2180299930 Michael Snyder, Stanford 19a6177f511fc54cb59d191f562ebd00 SRA:SRR5112434 https://www.encodeproject.org/files/ENCFF899IKW/@@download/ENCFF899IKW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF280GFD fastq reads ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF899IKW 2252705431 Michael Snyder, Stanford 391251e4993ddb7bbc3ccf133adf80cc SRA:SRR5112434 https://www.encodeproject.org/files/ENCFF280GFD/@@download/ENCFF280GFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF862UZN bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF677RCM, ENCFF807MUK, ENCFF954WVJ 3374914779 ENCODE Processing Pipeline 5b8721a0e900ddd5fa8e86744336c084 https://www.encodeproject.org/files/ENCFF862UZN/@@download/ENCFF862UZN.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF080MNK bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF280GFD, ENCFF807MUK, ENCFF899IKW 3723990459 ENCODE Processing Pipeline 9fe4ba26f81b283d5a7d3c453cec2d26 https://www.encodeproject.org/files/ENCFF080MNK/@@download/ENCFF080MNK.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF302IYD bigWig signal p-value ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF080MNK 867182926 ENCODE Processing Pipeline e225bfebdb63dc580a6ce7e325d5f53b https://www.encodeproject.org/files/ENCFF302IYD/@@download/ENCFF302IYD.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF285ZQY bigWig signal p-value ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF581ZJL, ENCFF862UZN 1030061078 ENCODE Processing Pipeline 2397458a42dbb0bf236f157f6f5e5647 https://www.encodeproject.org/files/ENCFF285ZQY/@@download/ENCFF285ZQY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF099VJR bigWig signal p-value ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF080MNK, ENCFF581ZJL, ENCFF862UZN 1583882516 ENCODE Processing Pipeline 802c8f1624f7e7f1d7951c3e02d11f2b https://www.encodeproject.org/files/ENCFF099VJR/@@download/ENCFF099VJR.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF105MND bigWig fold change over control ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF581ZJL, ENCFF862UZN 1068524758 ENCODE Processing Pipeline 1094f7500cf9b66c5c54e3536a249e52 https://www.encodeproject.org/files/ENCFF105MND/@@download/ENCFF105MND.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF542RIR bigWig fold change over control ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF080MNK 1011928799 ENCODE Processing Pipeline 8e822e5be119c614bd953244c3082a0d https://www.encodeproject.org/files/ENCFF542RIR/@@download/ENCFF542RIR.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF362QFP bigWig fold change over control ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF080MNK, ENCFF581ZJL, ENCFF862UZN 1949928958 ENCODE Processing Pipeline 88d09986152bb765394305215c4673dd https://www.encodeproject.org/files/ENCFF362QFP/@@download/ENCFF362QFP.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF008XTO bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF581ZJL, ENCFF862UZN 6606736 ENCODE Processing Pipeline f35483d19c4445bdeed1b505251a418e https://www.encodeproject.org/files/ENCFF008XTO/@@download/ENCFF008XTO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF830YCS bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF080MNK 6824938 ENCODE Processing Pipeline 1f26fecef2e02649484455fc3cc1772f https://www.encodeproject.org/files/ENCFF830YCS/@@download/ENCFF830YCS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF811RGP bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF080MNK, ENCFF581ZJL, ENCFF862UZN 7183477 ENCODE Processing Pipeline de10bf4b5542e94981e07d5156011e3b https://www.encodeproject.org/files/ENCFF811RGP/@@download/ENCFF811RGP.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF662SYL bigBed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF008XTO 13501824 ENCODE Processing Pipeline 4903d91d9cd1b51773ca13d96cbd38ae https://www.encodeproject.org/files/ENCFF662SYL/@@download/ENCFF662SYL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF872KNP bigBed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF811RGP 13433028 ENCODE Processing Pipeline cdd16aec8aef2671060c7be85360fa59 https://www.encodeproject.org/files/ENCFF872KNP/@@download/ENCFF872KNP.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF857XZI bigBed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF830YCS 13432599 ENCODE Processing Pipeline 85a7ff28e3eb335edc2902381187aa6a https://www.encodeproject.org/files/ENCFF857XZI/@@download/ENCFF857XZI.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF340YYY bam unfiltered alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF677RCM, ENCFF954WVJ 4209807152 ENCODE Processing Pipeline 9f540dcd8d18d59e18c10efdf7bee0ac https://www.encodeproject.org/files/ENCFF340YYY/@@download/ENCFF340YYY.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF836CNG bam unfiltered alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF280GFD, ENCFF643CGH, ENCFF899IKW 4715185946 ENCODE Processing Pipeline f994ecaf2e1f4630e7dc0f9453453631 https://www.encodeproject.org/files/ENCFF836CNG/@@download/ENCFF836CNG.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF871KNP bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF677RCM, ENCFF954WVJ 3377392964 ENCODE Processing Pipeline 6cad181803020a000048d63c8b07b988 https://www.encodeproject.org/files/ENCFF871KNP/@@download/ENCFF871KNP.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF490ICL bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF280GFD, ENCFF643CGH, ENCFF899IKW 3726758860 ENCODE Processing Pipeline 847be0d9056301bb4fd01eab5589ef2a https://www.encodeproject.org/files/ENCFF490ICL/@@download/ENCFF490ICL.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF305GHX bigWig signal p-value ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF871KNP, ENCFF910IKB 1067207971 ENCODE Processing Pipeline f471f33df65cf6ee002b352683076ef5 https://www.encodeproject.org/files/ENCFF305GHX/@@download/ENCFF305GHX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF694VNO bigWig signal p-value ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF227IZS, ENCFF490ICL 891134259 ENCODE Processing Pipeline f36e0c98b91911aee850d1c5d8eabdd7 https://www.encodeproject.org/files/ENCFF694VNO/@@download/ENCFF694VNO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF992RWH bigWig signal p-value ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF490ICL, ENCFF871KNP, ENCFF910IKB 1837000027 ENCODE Processing Pipeline 54106f2fc6c72eba4537a739c14628b1 https://www.encodeproject.org/files/ENCFF992RWH/@@download/ENCFF992RWH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF313LZB bigWig fold change over control ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF871KNP, ENCFF910IKB 1062957234 ENCODE Processing Pipeline 97782fe101cf1b2cd2d8dd773613bb9a https://www.encodeproject.org/files/ENCFF313LZB/@@download/ENCFF313LZB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF270RBT bigWig fold change over control ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF227IZS, ENCFF490ICL 1012677811 ENCODE Processing Pipeline dc984120c924c7dc7b7e3433c32b2c70 https://www.encodeproject.org/files/ENCFF270RBT/@@download/ENCFF270RBT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF931NXG bigWig fold change over control ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF490ICL, ENCFF871KNP, ENCFF910IKB 1938422483 ENCODE Processing Pipeline cee0982c4ed4eb7273f55087fdabb4aa https://www.encodeproject.org/files/ENCFF931NXG/@@download/ENCFF931NXG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF097OOH bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF871KNP, ENCFF910IKB 6498924 ENCODE Processing Pipeline cf88dee06d156cccad7e33a003b5c7b0 https://www.encodeproject.org/files/ENCFF097OOH/@@download/ENCFF097OOH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF276DDZ bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF227IZS, ENCFF490ICL 6693668 ENCODE Processing Pipeline 0f21f5e7ff1602801567634053e61590 https://www.encodeproject.org/files/ENCFF276DDZ/@@download/ENCFF276DDZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF477XNB bigBed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF097OOH 13538337 ENCODE Processing Pipeline acc7772613c0377ed70b7b29b01f0a60 https://www.encodeproject.org/files/ENCFF477XNB/@@download/ENCFF477XNB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF155AMX bigBed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF276DDZ 13422087 ENCODE Processing Pipeline 73483922b3a0d42726d82fc72a1526c4 https://www.encodeproject.org/files/ENCFF155AMX/@@download/ENCFF155AMX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF482TTM bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF490ICL, ENCFF871KNP, ENCFF910IKB 7156825 ENCODE Processing Pipeline 9fa2a5ce4ce8c130036e12dd24f8d1c6 https://www.encodeproject.org/files/ENCFF482TTM/@@download/ENCFF482TTM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF380PBE bigBed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF482TTM 13447870 ENCODE Processing Pipeline efb466c29b1167c9704db674cfc5c1d5 https://www.encodeproject.org/files/ENCFF380PBE/@@download/ENCFF380PBE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF951EDR bed narrowPeak conservative idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF097OOH, ENCFF276DDZ, ENCFF419RSJ, ENCFF482TTM 312211 ENCODE Processing Pipeline def0445013b104e6d0cb84dfd757c1c3 https://www.encodeproject.org/files/ENCFF951EDR/@@download/ENCFF951EDR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF073SVU bigBed narrowPeak optimal idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF905GXS 651504 ENCODE Processing Pipeline 75317dad1023750131b4671bb9651fbd https://www.encodeproject.org/files/ENCFF073SVU/@@download/ENCFF073SVU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF841XZB bigBed narrowPeak conservative idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF951EDR 616627 ENCODE Processing Pipeline 02f32c7e35c200148f6d6671744bbebd https://www.encodeproject.org/files/ENCFF841XZB/@@download/ENCFF841XZB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF905GXS bed narrowPeak optimal idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF097OOH, ENCFF276DDZ, ENCFF419RSJ, ENCFF482TTM 336627 ENCODE Processing Pipeline f9cf1c77884bac03869a5b8f336e1ac2 https://www.encodeproject.org/files/ENCFF905GXS/@@download/ENCFF905GXS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF934JXG bed narrowPeak conservative idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF008XTO, ENCFF811RGP, ENCFF830YCS 275981 ENCODE Processing Pipeline cccc8f6c4b7f9ac00b6a7c6dd18431df https://www.encodeproject.org/files/ENCFF934JXG/@@download/ENCFF934JXG.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF164HUB bigBed narrowPeak conservative idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF934JXG 564810 ENCODE Processing Pipeline 43f91fd1aa91079c9edcc783e965baae https://www.encodeproject.org/files/ENCFF164HUB/@@download/ENCFF164HUB.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF237UAN bed narrowPeak optimal idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF008XTO, ENCFF811RGP, ENCFF830YCS 297362 ENCODE Processing Pipeline cf2d85601c8811ad39574a73908395c8 https://www.encodeproject.org/files/ENCFF237UAN/@@download/ENCFF237UAN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF849DJZ bigBed narrowPeak optimal idr thresholded peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF237UAN 593370 ENCODE Processing Pipeline 64653562c38789f03fc701266c080537 https://www.encodeproject.org/files/ENCFF849DJZ/@@download/ENCFF849DJZ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF317GWC fastq reads ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF368CYV 1816666171 Michael Snyder, Stanford 5c1e2a9ea203ae40c3e83383b5e9512f SRA:SRR5112325 https://www.encodeproject.org/files/ENCFF317GWC/@@download/ENCFF317GWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF943EAL fastq reads ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF420ZMB 1789898419 Michael Snyder, Stanford 833297e12586f84eb2192e3c9f2c1725 SRA:SRR5112326 https://www.encodeproject.org/files/ENCFF943EAL/@@download/ENCFF943EAL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF420ZMB fastq reads ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF943EAL 1795793461 Michael Snyder, Stanford 1686a6d81aae01d6ed511cd61fdb0f42 SRA:SRR5112326 https://www.encodeproject.org/files/ENCFF420ZMB/@@download/ENCFF420ZMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF368CYV fastq reads ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF317GWC 1818820075 Michael Snyder, Stanford 8c9317d4f353e8cdcdf8544fcbf3d3dd SRA:SRR5112325 https://www.encodeproject.org/files/ENCFF368CYV/@@download/ENCFF368CYV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF509YPB bam unfiltered alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF420ZMB, ENCFF807MUK, ENCFF943EAL 4019946896 ENCODE Processing Pipeline 9d18bd1dabedd5e80552ed724ac90e25 https://www.encodeproject.org/files/ENCFF509YPB/@@download/ENCFF509YPB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF396SPQ bam unfiltered alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317GWC, ENCFF368CYV, ENCFF807MUK 4071948782 ENCODE Processing Pipeline 60a11be00899e50e4362b3ab589bd4a1 https://www.encodeproject.org/files/ENCFF396SPQ/@@download/ENCFF396SPQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF200ANM bam unfiltered alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF420ZMB, ENCFF643CGH, ENCFF943EAL 4023611603 ENCODE Processing Pipeline 61dde34621b4ec556e18d3afb9e7e32e https://www.encodeproject.org/files/ENCFF200ANM/@@download/ENCFF200ANM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF814FZD bam unfiltered alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317GWC, ENCFF368CYV, ENCFF643CGH 4075981073 ENCODE Processing Pipeline eebf0bcc3c5709a905c194cc49b8b443 https://www.encodeproject.org/files/ENCFF814FZD/@@download/ENCFF814FZD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF922WUK bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF420ZMB, ENCFF807MUK, ENCFF943EAL 3509243405 ENCODE Processing Pipeline e34fe8948c95a7829d99e4645ca47b2d https://www.encodeproject.org/files/ENCFF922WUK/@@download/ENCFF922WUK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF491NLK bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317GWC, ENCFF368CYV, ENCFF643CGH 3527847603 ENCODE Processing Pipeline f9d77813349b79b9f53043f6b0219beb https://www.encodeproject.org/files/ENCFF491NLK/@@download/ENCFF491NLK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF484PDX bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317GWC, ENCFF368CYV, ENCFF807MUK 3525717735 ENCODE Processing Pipeline d7f76cc115f839aa27d797c92b8b4530 https://www.encodeproject.org/files/ENCFF484PDX/@@download/ENCFF484PDX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF206SEB bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF420ZMB, ENCFF643CGH, ENCFF943EAL 3510985317 ENCODE Processing Pipeline bd2ecd7731e9622c4820d37d296a711b https://www.encodeproject.org/files/ENCFF206SEB/@@download/ENCFF206SEB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF490CCQ bigWig signal p-value ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF922WUK 1243414767 ENCODE Processing Pipeline dd18815c06f77b4fdaa8da9a9300bcbb https://www.encodeproject.org/files/ENCFF490CCQ/@@download/ENCFF490CCQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF643FJO bigWig signal p-value ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF484PDX 1279154354 ENCODE Processing Pipeline 126db65f75aa5a656a87cbb6306b5c6a https://www.encodeproject.org/files/ENCFF643FJO/@@download/ENCFF643FJO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF859CXE bigWig signal p-value ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF484PDX, ENCFF922WUK 1729990039 ENCODE Processing Pipeline a41bdfdda3432bd82e5b12bce75a1bfb https://www.encodeproject.org/files/ENCFF859CXE/@@download/ENCFF859CXE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF927KVW bigWig fold change over control ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF484PDX 1280607907 ENCODE Processing Pipeline 69335261b5bfe1fbe449f1133fe67f10 https://www.encodeproject.org/files/ENCFF927KVW/@@download/ENCFF927KVW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF375ULY bigWig fold change over control ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF922WUK 1290785694 ENCODE Processing Pipeline 724a6f8fea535c1d69b6cddda2deb875 https://www.encodeproject.org/files/ENCFF375ULY/@@download/ENCFF375ULY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF369NVZ bigWig fold change over control ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF484PDX, ENCFF922WUK 1837495794 ENCODE Processing Pipeline a77abd5737887dbe69908c8e98411285 https://www.encodeproject.org/files/ENCFF369NVZ/@@download/ENCFF369NVZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF519KHN bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF484PDX 6813182 ENCODE Processing Pipeline 1f325eba7f129d0e4bc625eb60333283 https://www.encodeproject.org/files/ENCFF519KHN/@@download/ENCFF519KHN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF620XFE bigBed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF034UND 13348392 ENCODE Processing Pipeline 16f27b11406785497bdd488e7a794f4d https://www.encodeproject.org/files/ENCFF620XFE/@@download/ENCFF620XFE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF034UND bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF922WUK 6910869 ENCODE Processing Pipeline 6c75bca3fc262c06974903c2a6c13dcb https://www.encodeproject.org/files/ENCFF034UND/@@download/ENCFF034UND.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF366BOX bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF484PDX, ENCFF922WUK 7214023 ENCODE Processing Pipeline 759fc19a3b8e0e4d9c7b93d92c808ba7 https://www.encodeproject.org/files/ENCFF366BOX/@@download/ENCFF366BOX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF639BOT bigBed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF519KHN 13436261 ENCODE Processing Pipeline 39881b51e2b12e698fdbb411f5644dcb https://www.encodeproject.org/files/ENCFF639BOT/@@download/ENCFF639BOT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF589LJT bigBed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF366BOX 13245518 ENCODE Processing Pipeline 098e5a66f36f90fe278b26fbfbfc22c1 https://www.encodeproject.org/files/ENCFF589LJT/@@download/ENCFF589LJT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF692NMB bed narrowPeak conservative idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF034UND, ENCFF366BOX, ENCFF519KHN 318179 ENCODE Processing Pipeline e3b5863c2646d0a256f8afb8d3d59edf https://www.encodeproject.org/files/ENCFF692NMB/@@download/ENCFF692NMB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF820HLI bed narrowPeak optimal idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF034UND, ENCFF366BOX, ENCFF519KHN 382240 ENCODE Processing Pipeline 7caf414b91c7748f5cf03a49b0071100 https://www.encodeproject.org/files/ENCFF820HLI/@@download/ENCFF820HLI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF212SOR bigBed narrowPeak conservative idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF692NMB 685121 ENCODE Processing Pipeline 54b7a79780c3334e9f8cb8da8ade20bc https://www.encodeproject.org/files/ENCFF212SOR/@@download/ENCFF212SOR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF153EWM bigBed narrowPeak optimal idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF820HLI 788652 ENCODE Processing Pipeline d0e78b693af7a78e430165d48b6f3422 https://www.encodeproject.org/files/ENCFF153EWM/@@download/ENCFF153EWM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF467HIP bigWig signal p-value ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF206SEB 1336404359 ENCODE Processing Pipeline 82cff3b1b683a3e0ce85fab27a2d41db https://www.encodeproject.org/files/ENCFF467HIP/@@download/ENCFF467HIP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF041LGL bigWig signal p-value ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF491NLK 1169544923 ENCODE Processing Pipeline f43599fb85f3054cb46558dfef63bb70 https://www.encodeproject.org/files/ENCFF041LGL/@@download/ENCFF041LGL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF447PNK bigWig signal p-value ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF206SEB, ENCFF491NLK 1442086467 ENCODE Processing Pipeline 902a3dcb9d3e7f674133f4af6a473725 https://www.encodeproject.org/files/ENCFF447PNK/@@download/ENCFF447PNK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF795BGS bigWig fold change over control ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF491NLK 1292017476 ENCODE Processing Pipeline 96c4bcb2786584c047478ab6627b5dbd https://www.encodeproject.org/files/ENCFF795BGS/@@download/ENCFF795BGS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF858YFT bigWig fold change over control ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF206SEB 1250048032 ENCODE Processing Pipeline c7febd894f796b30c666b38b901669a4 https://www.encodeproject.org/files/ENCFF858YFT/@@download/ENCFF858YFT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF163JON bigWig fold change over control ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF206SEB, ENCFF491NLK 1803119913 ENCODE Processing Pipeline f7c6650b3e87d12cdf454605fb374b88 https://www.encodeproject.org/files/ENCFF163JON/@@download/ENCFF163JON.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF961HEF bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF491NLK 6738785 ENCODE Processing Pipeline 895568982087aed231034d0928b1c58c https://www.encodeproject.org/files/ENCFF961HEF/@@download/ENCFF961HEF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF474DKN bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF206SEB 6836275 ENCODE Processing Pipeline 5bd346ec057f6979d8574a9c790d1125 https://www.encodeproject.org/files/ENCFF474DKN/@@download/ENCFF474DKN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF378WAA bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF206SEB, ENCFF491NLK 7195967 ENCODE Processing Pipeline 73d278f10aeaed58036e7d84f6fc2c43 https://www.encodeproject.org/files/ENCFF378WAA/@@download/ENCFF378WAA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF465FJO bigBed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF961HEF 13438645 ENCODE Processing Pipeline b171bb3b1d9b5631d1da5e688f3f528a https://www.encodeproject.org/files/ENCFF465FJO/@@download/ENCFF465FJO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF411AQP bigBed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF474DKN 13359245 ENCODE Processing Pipeline 70dabe9c80094e84fd44d00b44a523bd https://www.encodeproject.org/files/ENCFF411AQP/@@download/ENCFF411AQP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF648ZCQ bigBed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF378WAA 13254828 ENCODE Processing Pipeline 9645bb69d054620ee65880b469c3d425 https://www.encodeproject.org/files/ENCFF648ZCQ/@@download/ENCFF648ZCQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF644HVY bed narrowPeak conservative idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF378WAA, ENCFF419RSJ, ENCFF474DKN, ENCFF961HEF 326101 ENCODE Processing Pipeline bab81982a4311d07c1ae78028791f9f5 https://www.encodeproject.org/files/ENCFF644HVY/@@download/ENCFF644HVY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF195OUI bed narrowPeak optimal idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF378WAA, ENCFF419RSJ, ENCFF474DKN, ENCFF961HEF 388471 ENCODE Processing Pipeline bca2dac32ab9f0e2fe5d55cea649ca07 https://www.encodeproject.org/files/ENCFF195OUI/@@download/ENCFF195OUI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF661LSD bigBed narrowPeak optimal idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF195OUI 798124 ENCODE Processing Pipeline 9c09e8aa832a95f0405a622be1b4bd2a https://www.encodeproject.org/files/ENCFF661LSD/@@download/ENCFF661LSD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF351UWC bigBed narrowPeak conservative idr thresholded peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF644HVY 696853 ENCODE Processing Pipeline c1727433c27dc98e81029f1be204baeb https://www.encodeproject.org/files/ENCFF351UWC/@@download/ENCFF351UWC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF095AEN fastq reads ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1387382347 Richard Myers, HAIB 5aaaecd48d9509a3c7741d5428b85849 SRA:SRR5339380 https://www.encodeproject.org/files/ENCFF095AEN/@@download/ENCFF095AEN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF862ZWK fastq reads ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1543752932 Richard Myers, HAIB 519b0cc90cfbbab5ecda3cb11e09296f SRA:SRR5339379 https://www.encodeproject.org/files/ENCFF862ZWK/@@download/ENCFF862ZWK.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF928UGX bam unfiltered alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF095AEN, ENCFF807MUK 1483936293 ENCODE Processing Pipeline 534ba4931b54236d65d2690bc84952d7 https://www.encodeproject.org/files/ENCFF928UGX/@@download/ENCFF928UGX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF612OKW bam unfiltered alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF862ZWK 1606132165 ENCODE Processing Pipeline 0627032e6055c85bff893ac0e25d6922 https://www.encodeproject.org/files/ENCFF612OKW/@@download/ENCFF612OKW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF158MII bam unfiltered alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF095AEN, ENCFF643CGH 1487716435 ENCODE Processing Pipeline 57ce3ba0f4b6d94bded78b6d1f8472bb https://www.encodeproject.org/files/ENCFF158MII/@@download/ENCFF158MII.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF466FOB bam unfiltered alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF862ZWK 1603376365 ENCODE Processing Pipeline 568cc63b0280418a176c752d93932672 https://www.encodeproject.org/files/ENCFF466FOB/@@download/ENCFF466FOB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF784OML bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF095AEN, ENCFF807MUK 1118214477 ENCODE Processing Pipeline 28a974dc75923fe2d6f735855fc29629 https://www.encodeproject.org/files/ENCFF784OML/@@download/ENCFF784OML.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF471KSC bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF862ZWK 1171157212 ENCODE Processing Pipeline 02ac50a6db4f09377d083ea4525cb878 https://www.encodeproject.org/files/ENCFF471KSC/@@download/ENCFF471KSC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399MTG bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF095AEN, ENCFF643CGH 1118877915 ENCODE Processing Pipeline b3db353645aa01a1742702e618d0f739 https://www.encodeproject.org/files/ENCFF399MTG/@@download/ENCFF399MTG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF254QWH bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF862ZWK 1170786581 ENCODE Processing Pipeline be8289e14ae33f441bfc91fbd27fb8a5 https://www.encodeproject.org/files/ENCFF254QWH/@@download/ENCFF254QWH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF398EKQ bigWig signal p-value ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF471KSC 467827939 ENCODE Processing Pipeline a66edb600d0bafabfd05614dd0d398b5 https://www.encodeproject.org/files/ENCFF398EKQ/@@download/ENCFF398EKQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF271JKO bigWig signal p-value ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF399MTG 520698521 ENCODE Processing Pipeline 7a20e6b64808d194b17c1b11fe20636b https://www.encodeproject.org/files/ENCFF271JKO/@@download/ENCFF271JKO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126RBQ bigWig signal p-value ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF399MTG, ENCFF471KSC 673352650 ENCODE Processing Pipeline 431af4b16fa94c36175b43425650c4e5 https://www.encodeproject.org/files/ENCFF126RBQ/@@download/ENCFF126RBQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF911AWW bigWig fold change over control ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF471KSC 465745064 ENCODE Processing Pipeline 4f83949c25babb5995f7251026ef711f https://www.encodeproject.org/files/ENCFF911AWW/@@download/ENCFF911AWW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF238NVL bigWig fold change over control ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF399MTG 459880569 ENCODE Processing Pipeline c7c08db302d9d224c9d7eff85e03ded5 https://www.encodeproject.org/files/ENCFF238NVL/@@download/ENCFF238NVL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851CDJ bigWig fold change over control ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF399MTG, ENCFF471KSC 769281946 ENCODE Processing Pipeline 9a1dc88a83d71b16db091ed32b552040 https://www.encodeproject.org/files/ENCFF851CDJ/@@download/ENCFF851CDJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF280NGD bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF471KSC 5731533 ENCODE Processing Pipeline 28616afca926c82dfc97cc52385cafb7 https://www.encodeproject.org/files/ENCFF280NGD/@@download/ENCFF280NGD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045RQG bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF399MTG 5377307 ENCODE Processing Pipeline 70722df144fe86e2dbdc12413c08dd32 https://www.encodeproject.org/files/ENCFF045RQG/@@download/ENCFF045RQG.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF949ZYZ bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF399MTG, ENCFF471KSC 6257460 ENCODE Processing Pipeline 4d2b0c2cc899b671abc6dd4ca5c2509b https://www.encodeproject.org/files/ENCFF949ZYZ/@@download/ENCFF949ZYZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF942OEJ bigBed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF280NGD 12993266 ENCODE Processing Pipeline 0cd2840d4ebf8f5f284116796fa8d2aa https://www.encodeproject.org/files/ENCFF942OEJ/@@download/ENCFF942OEJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF902FGV bigBed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF045RQG 13151062 ENCODE Processing Pipeline 109d61f6b0a8b4dc39524d3f97749a83 https://www.encodeproject.org/files/ENCFF902FGV/@@download/ENCFF902FGV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF574ZLJ bigBed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF949ZYZ 13170291 ENCODE Processing Pipeline 43b263ac462e69202a847933df59cd14 https://www.encodeproject.org/files/ENCFF574ZLJ/@@download/ENCFF574ZLJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF863TTH bed narrowPeak conservative idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045RQG, ENCFF280NGD, ENCFF419RSJ, ENCFF949ZYZ 567940 ENCODE Processing Pipeline 6f9bab0e691df46a8f5d3bfeaedf6870 https://www.encodeproject.org/files/ENCFF863TTH/@@download/ENCFF863TTH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF786BSA bed narrowPeak optimal idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF045RQG, ENCFF280NGD, ENCFF419RSJ, ENCFF949ZYZ 644584 ENCODE Processing Pipeline c17a093b670dbea4317afef2fac097c0 https://www.encodeproject.org/files/ENCFF786BSA/@@download/ENCFF786BSA.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF937TCE bigBed narrowPeak conservative idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF863TTH 1125788 ENCODE Processing Pipeline aeaf016ec9dc5c79d4af7fd361a1df72 https://www.encodeproject.org/files/ENCFF937TCE/@@download/ENCFF937TCE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF056BFN bigBed narrowPeak optimal idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF786BSA 1240030 ENCODE Processing Pipeline 0e1f168ef3237fd252bb9c93dfdc6411 https://www.encodeproject.org/files/ENCFF056BFN/@@download/ENCFF056BFN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF210HRJ bigWig signal p-value ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF254QWH 1182831041 ENCODE Processing Pipeline b2adf85fdae664bbb6b3df9303b88ad1 https://www.encodeproject.org/files/ENCFF210HRJ/@@download/ENCFF210HRJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF277OIU bigWig signal p-value ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF784OML 1168515244 ENCODE Processing Pipeline d1ccd0151ea4cce04a186a28987435c9 https://www.encodeproject.org/files/ENCFF277OIU/@@download/ENCFF277OIU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF025LQB bigWig signal p-value ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF254QWH, ENCFF784OML 1404449307 ENCODE Processing Pipeline 7584bf090a139e44a70816c8b10bd9ac https://www.encodeproject.org/files/ENCFF025LQB/@@download/ENCFF025LQB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF164WSI bigWig fold change over control ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF254QWH 884736892 ENCODE Processing Pipeline 9bd0c8186cf1e1cc4056fd0b3af5db35 https://www.encodeproject.org/files/ENCFF164WSI/@@download/ENCFF164WSI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF084FPA bigWig fold change over control ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF784OML 874812920 ENCODE Processing Pipeline abe4122af556b57d44f25f2301a3ad33 https://www.encodeproject.org/files/ENCFF084FPA/@@download/ENCFF084FPA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517TGS bigWig fold change over control ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF254QWH, ENCFF784OML 1347394226 ENCODE Processing Pipeline b5fbda3bfd635dfd3395a777bfc47595 https://www.encodeproject.org/files/ENCFF517TGS/@@download/ENCFF517TGS.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF614LFE bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF254QWH 6405359 ENCODE Processing Pipeline 83c4efe2348a579e7265eaca24f6529c https://www.encodeproject.org/files/ENCFF614LFE/@@download/ENCFF614LFE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF651MYL bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF784OML 6070841 ENCODE Processing Pipeline bce36ae0ca5ba42452121e0c5418c447 https://www.encodeproject.org/files/ENCFF651MYL/@@download/ENCFF651MYL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378WYA bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF254QWH, ENCFF784OML 6785220 ENCODE Processing Pipeline 9078bbae3368fd6cbb254ff3d233f9d1 https://www.encodeproject.org/files/ENCFF378WYA/@@download/ENCFF378WYA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF492KJA bigBed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF614LFE 13144542 ENCODE Processing Pipeline 48655ea25949935ec7e736f709a9e76c https://www.encodeproject.org/files/ENCFF492KJA/@@download/ENCFF492KJA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF811LFP bigBed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF378WYA 13287466 ENCODE Processing Pipeline 66347a0ab371c67bb221e8d344e2d7d5 https://www.encodeproject.org/files/ENCFF811LFP/@@download/ENCFF811LFP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF637PDB bigBed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF651MYL 13355048 ENCODE Processing Pipeline 5c4034e92bd94425ba9cf81430871c9f https://www.encodeproject.org/files/ENCFF637PDB/@@download/ENCFF637PDB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF518ZXD bed narrowPeak optimal idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF378WYA, ENCFF614LFE, ENCFF651MYL 642388 ENCODE Processing Pipeline 0126686f382b16e6194d34e2f03fe860 https://www.encodeproject.org/files/ENCFF518ZXD/@@download/ENCFF518ZXD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF203RWA bed narrowPeak conservative idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF378WYA, ENCFF614LFE, ENCFF651MYL 566370 ENCODE Processing Pipeline f5d0ce24207332357bf5b3bc8d6131f2 https://www.encodeproject.org/files/ENCFF203RWA/@@download/ENCFF203RWA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF348GTX bigBed narrowPeak conservative idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203RWA 1166320 ENCODE Processing Pipeline fce014d0856710f1a995b0b9b76c37f6 https://www.encodeproject.org/files/ENCFF348GTX/@@download/ENCFF348GTX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970KQA bigBed narrowPeak optimal idr thresholded peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF518ZXD 1277254 ENCODE Processing Pipeline 3e3b9aac187ed1f1a12a0a42bdf87aa7 https://www.encodeproject.org/files/ENCFF970KQA/@@download/ENCFF970KQA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF636OJT fastq reads ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF076RPA 6931039347 Michael Snyder, Stanford 860c35abe99b67b0ad26d267c4d04f72 SRA:SRR6213990 https://www.encodeproject.org/files/ENCFF636OJT/@@download/ENCFF636OJT.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF076RPA fastq reads ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF636OJT 6586621246 Michael Snyder, Stanford 0c6fe0618229ca600839d5e3fa37fd8a SRA:SRR6213990 https://www.encodeproject.org/files/ENCFF076RPA/@@download/ENCFF076RPA.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF604RKI fastq reads ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF478BKV 2550091931 Michael Snyder, Stanford 086948816bc6e1c57d058ca24a86e920 SRA:SRR6213991 https://www.encodeproject.org/files/ENCFF604RKI/@@download/ENCFF604RKI.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF478BKV fastq reads ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF604RKI 2897771533 Michael Snyder, Stanford 4f91e40c9673e898901ca98e9c8fee4e SRA:SRR6213991 https://www.encodeproject.org/files/ENCFF478BKV/@@download/ENCFF478BKV.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF131SBW bam unfiltered alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 100 ENCFF478BKV, ENCFF604RKI, ENCFF807MUK 5027077568 ENCODE Processing Pipeline e5f45acaa9a8bc80b1ca66750b3a4e51 https://www.encodeproject.org/files/ENCFF131SBW/@@download/ENCFF131SBW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF111XPI bam unfiltered alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 100 ENCFF478BKV, ENCFF604RKI, ENCFF643CGH 5029776559 ENCODE Processing Pipeline 7f573cee1744dff570b5bb344ea348d0 https://www.encodeproject.org/files/ENCFF111XPI/@@download/ENCFF111XPI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF751WCI bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 100 ENCFF478BKV, ENCFF604RKI, ENCFF643CGH 3156075469 ENCODE Processing Pipeline 805c82d8df2e031338bebaf73ead8706 https://www.encodeproject.org/files/ENCFF751WCI/@@download/ENCFF751WCI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF773WIK bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 100 ENCFF478BKV, ENCFF604RKI, ENCFF807MUK 3153691796 ENCODE Processing Pipeline 30708ebfe83e1d6a33a5873387fa4485 https://www.encodeproject.org/files/ENCFF773WIK/@@download/ENCFF773WIK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF458PYE bam unfiltered alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 100 ENCFF076RPA, ENCFF636OJT, ENCFF807MUK 11733567985 ENCODE Processing Pipeline aac27dc175f5e09ea77e5ee5b953a7fc https://www.encodeproject.org/files/ENCFF458PYE/@@download/ENCFF458PYE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF622EUC bam unfiltered alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 100 ENCFF076RPA, ENCFF636OJT, ENCFF643CGH 11739046964 ENCODE Processing Pipeline b3897cdb4590dd0213111ebc8e88e9c0 https://www.encodeproject.org/files/ENCFF622EUC/@@download/ENCFF622EUC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147YGB bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 100 ENCFF076RPA, ENCFF636OJT, ENCFF807MUK 8412892923 ENCODE Processing Pipeline 35ebc010af1ba7e7aab235226907c0aa https://www.encodeproject.org/files/ENCFF147YGB/@@download/ENCFF147YGB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF786JYO bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 100 ENCFF076RPA, ENCFF636OJT, ENCFF643CGH 8422111950 ENCODE Processing Pipeline 9d8ed97e751d02eadb2da9113fe64a24 https://www.encodeproject.org/files/ENCFF786JYO/@@download/ENCFF786JYO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF377FGX bigWig signal p-value ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF712WXB, ENCFF786JYO, ENCFF790TAN 2138249771 ENCODE Processing Pipeline f0761a86bf8531076f6b67a019415031 https://www.encodeproject.org/files/ENCFF377FGX/@@download/ENCFF377FGX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF749AZQ bigWig fold change over control ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF712WXB, ENCFF786JYO, ENCFF790TAN 2486695419 ENCODE Processing Pipeline 83c4f8754b647ccf1d4c51254ed59b44 https://www.encodeproject.org/files/ENCFF749AZQ/@@download/ENCFF749AZQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF947TNV bigWig signal p-value ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF712WXB, ENCFF751WCI 1109797767 ENCODE Processing Pipeline 3ea7aa0202fcf7d28ca6dc3eb56dd948 https://www.encodeproject.org/files/ENCFF947TNV/@@download/ENCFF947TNV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF406KPK bigWig signal p-value ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF712WXB, ENCFF751WCI, ENCFF786JYO, ENCFF790TAN 2355499521 ENCODE Processing Pipeline d0f5235014ffbe0c4989265c9a26d0c0 https://www.encodeproject.org/files/ENCFF406KPK/@@download/ENCFF406KPK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF811PAW bigWig fold change over control ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF712WXB, ENCFF751WCI 1155983707 ENCODE Processing Pipeline ad15b87d629308e7c747daf730ae17dc https://www.encodeproject.org/files/ENCFF811PAW/@@download/ENCFF811PAW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF521PTP bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF712WXB, ENCFF751WCI 7122323 ENCODE Processing Pipeline 581c683558405edda82b169e5c2e9c86 https://www.encodeproject.org/files/ENCFF521PTP/@@download/ENCFF521PTP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF225FLG bigBed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF643GEF 12818329 ENCODE Processing Pipeline 1e26349a79f8f0a19938855bea5b00b4 https://www.encodeproject.org/files/ENCFF225FLG/@@download/ENCFF225FLG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF097EAL bigBed narrowPeak optimal idr thresholded peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF225BXA 1305785 ENCODE Processing Pipeline 0960a54d4613e59d6350480224ad81b7 https://www.encodeproject.org/files/ENCFF097EAL/@@download/ENCFF097EAL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF931ZYG bigWig fold change over control ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF712WXB, ENCFF751WCI, ENCFF786JYO, ENCFF790TAN 2764094144 ENCODE Processing Pipeline 98bbfe46bdf37870d18080b8ffc8b43c https://www.encodeproject.org/files/ENCFF931ZYG/@@download/ENCFF931ZYG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF643GEF bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF712WXB, ENCFF786JYO, ENCFF790TAN 7277909 ENCODE Processing Pipeline 55508abd54ea2d9fd1f806f339b908d0 https://www.encodeproject.org/files/ENCFF643GEF/@@download/ENCFF643GEF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565YNS bigBed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF521PTP 12867392 ENCODE Processing Pipeline 12f62935bb7deea4cea4a398ba35acdb https://www.encodeproject.org/files/ENCFF565YNS/@@download/ENCFF565YNS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF322FWS bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF712WXB, ENCFF751WCI, ENCFF786JYO, ENCFF790TAN 7294067 ENCODE Processing Pipeline c6346bd9a26e09c1141fd6456fab2023 https://www.encodeproject.org/files/ENCFF322FWS/@@download/ENCFF322FWS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF929PEV bigBed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF322FWS 12735772 ENCODE Processing Pipeline 29729d447f33bd0fcee2fe7cf5f253ca https://www.encodeproject.org/files/ENCFF929PEV/@@download/ENCFF929PEV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF225BXA bed narrowPeak optimal idr thresholded peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF322FWS, ENCFF419RSJ, ENCFF521PTP, ENCFF643GEF 620939 ENCODE Processing Pipeline 484ba0bb3a975de9a58cca6606d4af79 https://www.encodeproject.org/files/ENCFF225BXA/@@download/ENCFF225BXA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF993VKU bigWig fold change over control ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF147YGB, ENCFF160VXC, ENCFF834TUP 2498190360 ENCODE Processing Pipeline 16d5576144d23df53b2d36f2c3343117 https://www.encodeproject.org/files/ENCFF993VKU/@@download/ENCFF993VKU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF986DDI bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF773WIK, ENCFF834TUP 7123126 ENCODE Processing Pipeline bbb75f1080f65d0247bac28cfbadfa10 https://www.encodeproject.org/files/ENCFF986DDI/@@download/ENCFF986DDI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF420YQY bigBed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF311FOZ 12822151 ENCODE Processing Pipeline ec0fabf6167bb10b9ec6e4beb7c9686d https://www.encodeproject.org/files/ENCFF420YQY/@@download/ENCFF420YQY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF605YGM bigWig signal p-value ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF773WIK, ENCFF834TUP 1142750307 ENCODE Processing Pipeline bb645d14481d2225bd79f056a9b6acde https://www.encodeproject.org/files/ENCFF605YGM/@@download/ENCFF605YGM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF636ZVO bigWig signal p-value ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF147YGB, ENCFF160VXC, ENCFF834TUP 2216454495 ENCODE Processing Pipeline 07dc20862c6923e12794487d3d8fc2b3 https://www.encodeproject.org/files/ENCFF636ZVO/@@download/ENCFF636ZVO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF748LAO bigWig signal p-value ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF147YGB, ENCFF160VXC, ENCFF773WIK, ENCFF834TUP 2365289286 ENCODE Processing Pipeline ae95b22da46fc55976a4d4ed998246e2 https://www.encodeproject.org/files/ENCFF748LAO/@@download/ENCFF748LAO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF226XAW bigWig fold change over control ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF147YGB, ENCFF160VXC, ENCFF773WIK, ENCFF834TUP 2775041272 ENCODE Processing Pipeline 3f9fa50b598dca5d4a41e42122c6d462 https://www.encodeproject.org/files/ENCFF226XAW/@@download/ENCFF226XAW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF311FOZ bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF147YGB, ENCFF160VXC, ENCFF834TUP 7285652 ENCODE Processing Pipeline 1a0604f259a0b01e89094bf7f2d187be https://www.encodeproject.org/files/ENCFF311FOZ/@@download/ENCFF311FOZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF307VFN bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF147YGB, ENCFF160VXC, ENCFF773WIK, ENCFF834TUP 7287629 ENCODE Processing Pipeline 63a0390ef128a8738418b65c96ef42f0 https://www.encodeproject.org/files/ENCFF307VFN/@@download/ENCFF307VFN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF050MMS bigWig fold change over control ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF773WIK, ENCFF834TUP 1156616005 ENCODE Processing Pipeline d884e1bde4a62538a02bd67464e243a2 https://www.encodeproject.org/files/ENCFF050MMS/@@download/ENCFF050MMS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF289FWJ bigBed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF986DDI 12863413 ENCODE Processing Pipeline abc40b20e0605da86a0ea879735b6993 https://www.encodeproject.org/files/ENCFF289FWJ/@@download/ENCFF289FWJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF996EZJ bigBed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF307VFN 12714362 ENCODE Processing Pipeline 04ab517b7a0f41572a22ca5e7dc282a4 https://www.encodeproject.org/files/ENCFF996EZJ/@@download/ENCFF996EZJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF925ANU bed narrowPeak optimal idr thresholded peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF307VFN, ENCFF311FOZ, ENCFF986DDI 620214 ENCODE Processing Pipeline a21ec613c1cc66f3735a50212f8ee1f9 https://www.encodeproject.org/files/ENCFF925ANU/@@download/ENCFF925ANU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF663BON bigBed narrowPeak optimal idr thresholded peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF925ANU 1299359 ENCODE Processing Pipeline b707509459cc74cff1de9f8620b4818e https://www.encodeproject.org/files/ENCFF663BON/@@download/ENCFF663BON.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF098DZH fastq reads ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF728AOV 3197595225 Michael Snyder, Stanford e064353c8b3744d4f9ba107b1e98a2c9 SRA:SRR6214344 https://www.encodeproject.org/files/ENCFF098DZH/@@download/ENCFF098DZH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF457HZH fastq reads ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF169DJA 3340373257 Michael Snyder, Stanford bb113710be3fef51b028e8e760d4c46e SRA:SRR6214343 https://www.encodeproject.org/files/ENCFF457HZH/@@download/ENCFF457HZH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF169DJA fastq reads ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF457HZH 3408661456 Michael Snyder, Stanford 3910fe4a1eea01c4fa9da84e7447591b SRA:SRR6214343 https://www.encodeproject.org/files/ENCFF169DJA/@@download/ENCFF169DJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF728AOV fastq reads ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF098DZH 3135161505 Michael Snyder, Stanford 867e7da8fd800cfb5ec2daffdffa3973 SRA:SRR6214344 https://www.encodeproject.org/files/ENCFF728AOV/@@download/ENCFF728AOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF354JYP bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF098DZH, ENCFF728AOV, ENCFF807MUK 5410875902 ENCODE Processing Pipeline b14312744c387cc944a4a50a10ca8128 https://www.encodeproject.org/files/ENCFF354JYP/@@download/ENCFF354JYP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF654GUR bam unfiltered alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF098DZH, ENCFF728AOV, ENCFF807MUK 6352267529 ENCODE Processing Pipeline 7336109925c21b3b7166c2f117ab3698 https://www.encodeproject.org/files/ENCFF654GUR/@@download/ENCFF654GUR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF206DGM bam unfiltered alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF169DJA, ENCFF457HZH, ENCFF643CGH 6763711168 ENCODE Processing Pipeline bd6db8752b77647d38a1b8dd6b132b0c https://www.encodeproject.org/files/ENCFF206DGM/@@download/ENCFF206DGM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF345ZQZ bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF098DZH, ENCFF643CGH, ENCFF728AOV 5413971731 ENCODE Processing Pipeline 0c806c89941a2beb1384fecda4cb3871 https://www.encodeproject.org/files/ENCFF345ZQZ/@@download/ENCFF345ZQZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF782WSP bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF169DJA, ENCFF457HZH, ENCFF807MUK 5738171511 ENCODE Processing Pipeline 991ce5c75c4348d62c835e755823ec51 https://www.encodeproject.org/files/ENCFF782WSP/@@download/ENCFF782WSP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF472RPZ bam unfiltered alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF169DJA, ENCFF457HZH, ENCFF807MUK 6756192510 ENCODE Processing Pipeline c5e6b3c66c87c162e5556e020f5e4d43 https://www.encodeproject.org/files/ENCFF472RPZ/@@download/ENCFF472RPZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF954INV bam unfiltered alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF098DZH, ENCFF643CGH, ENCFF728AOV 6358796575 ENCODE Processing Pipeline 42c8c558bf6127bb6c6b065b4b079ab2 https://www.encodeproject.org/files/ENCFF954INV/@@download/ENCFF954INV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF273KRY bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF169DJA, ENCFF457HZH, ENCFF643CGH 5741886539 ENCODE Processing Pipeline 8fc0f53b50c3b18175286339278dccd7 https://www.encodeproject.org/files/ENCFF273KRY/@@download/ENCFF273KRY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF008POG bigWig signal p-value ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF345ZQZ 1226616785 ENCODE Processing Pipeline b3e7f5adbc88774b2391f9698bc0c2dc https://www.encodeproject.org/files/ENCFF008POG/@@download/ENCFF008POG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF080PZJ bigWig signal p-value ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF273KRY 1489067658 ENCODE Processing Pipeline 33b8e7884ab7d4a11031b5037d7f965d https://www.encodeproject.org/files/ENCFF080PZJ/@@download/ENCFF080PZJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF868QFJ bigWig fold change over control ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF273KRY 1576841271 ENCODE Processing Pipeline 8df652e214c006ad484746976044ae08 https://www.encodeproject.org/files/ENCFF868QFJ/@@download/ENCFF868QFJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF235CTZ bigWig fold change over control ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF345ZQZ 1519101291 ENCODE Processing Pipeline 23d58827b2cb3cb3acaaeb82deee6c5c https://www.encodeproject.org/files/ENCFF235CTZ/@@download/ENCFF235CTZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF972YKT bigWig signal p-value ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF273KRY, ENCFF345ZQZ 1994879385 ENCODE Processing Pipeline 06336ecc33240bba3331c807810320c6 https://www.encodeproject.org/files/ENCFF972YKT/@@download/ENCFF972YKT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF349XNB bigWig signal p-value ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF782WSP 1550085862 ENCODE Processing Pipeline 3fa244478b50a8887315ff02b1bb7161 https://www.encodeproject.org/files/ENCFF349XNB/@@download/ENCFF349XNB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF627WFI bigWig fold change over control ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF273KRY, ENCFF345ZQZ 2139466734 ENCODE Processing Pipeline 69a7f1ef85d57f5603b2089f2ace3c0e https://www.encodeproject.org/files/ENCFF627WFI/@@download/ENCFF627WFI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF213JWT bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF345ZQZ 6745895 ENCODE Processing Pipeline 43a7aedf654813f2960eea49a5957385 https://www.encodeproject.org/files/ENCFF213JWT/@@download/ENCFF213JWT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF428GRM bed narrowPeak conservative idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF213JWT, ENCFF293GCU, ENCFF419RSJ, ENCFF639ORZ 49603 ENCODE Processing Pipeline 888b8e7b0f68fe67d7fc3dc9bb5305dc https://www.encodeproject.org/files/ENCFF428GRM/@@download/ENCFF428GRM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF657RPA bed narrowPeak optimal idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF213JWT, ENCFF293GCU, ENCFF419RSJ, ENCFF639ORZ 73584 ENCODE Processing Pipeline 681a4ae808d18982f2ee7842e2dda7aa https://www.encodeproject.org/files/ENCFF657RPA/@@download/ENCFF657RPA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF344AEN bigWig signal p-value ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF354JYP 1394570614 ENCODE Processing Pipeline df41420b1a23f799ba49fe1b5c3f8fe1 https://www.encodeproject.org/files/ENCFF344AEN/@@download/ENCFF344AEN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF293GCU bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF273KRY 6824610 ENCODE Processing Pipeline 90d7aa488afbd8202aab564c915952c2 https://www.encodeproject.org/files/ENCFF293GCU/@@download/ENCFF293GCU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF943QHO bigBed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF213JWT 11139770 ENCODE Processing Pipeline c7a1a3bde457af61e7a83c792ae1187f https://www.encodeproject.org/files/ENCFF943QHO/@@download/ENCFF943QHO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF440KZD bigBed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF639ORZ 13088940 ENCODE Processing Pipeline 84c1b7918b1c6d0454154cef3266fd17 https://www.encodeproject.org/files/ENCFF440KZD/@@download/ENCFF440KZD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF990BXG bigBed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF293GCU 11106990 ENCODE Processing Pipeline 1b378d2beddca6e5096a66220d05531d https://www.encodeproject.org/files/ENCFF990BXG/@@download/ENCFF990BXG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF026IGI bigWig signal p-value ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF354JYP, ENCFF782WSP 1993263684 ENCODE Processing Pipeline 2c6f4353aed6d5eb8f1db6eab765f089 https://www.encodeproject.org/files/ENCFF026IGI/@@download/ENCFF026IGI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF639ORZ bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF273KRY, ENCFF345ZQZ 7184816 ENCODE Processing Pipeline 2a5b2fac2579b97eb75692728c3ff6b0 https://www.encodeproject.org/files/ENCFF639ORZ/@@download/ENCFF639ORZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF219DHY bigBed narrowPeak conservative idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF428GRM 150324 ENCODE Processing Pipeline d822f54f6d974110bf4908a528c5cc5e https://www.encodeproject.org/files/ENCFF219DHY/@@download/ENCFF219DHY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF457CQX bigBed narrowPeak optimal idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF657RPA 189075 ENCODE Processing Pipeline d9b2f525955bad8c00b855e68e7a2e97 https://www.encodeproject.org/files/ENCFF457CQX/@@download/ENCFF457CQX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF470MPJ bigWig fold change over control ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF354JYP 1526875677 ENCODE Processing Pipeline 9dc3203d108a8fe377d2fa6ab7d0ac3f https://www.encodeproject.org/files/ENCFF470MPJ/@@download/ENCFF470MPJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF462JST bigWig fold change over control ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF782WSP 1562070811 ENCODE Processing Pipeline 42190485056cbe8e13bf648c01413d86 https://www.encodeproject.org/files/ENCFF462JST/@@download/ENCFF462JST.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF595AOW bigWig fold change over control ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF354JYP, ENCFF782WSP 2137059751 ENCODE Processing Pipeline 5bf1fa60647f81986c6c8c7e77ee7f76 https://www.encodeproject.org/files/ENCFF595AOW/@@download/ENCFF595AOW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF066DHI bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF782WSP 6823410 ENCODE Processing Pipeline 1811c322e3188c60e891d31505751615 https://www.encodeproject.org/files/ENCFF066DHI/@@download/ENCFF066DHI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF955QVX bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF354JYP 6746040 ENCODE Processing Pipeline 28b2acf3e6df1fca31b6793b67533d5e https://www.encodeproject.org/files/ENCFF955QVX/@@download/ENCFF955QVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF035JPP bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF354JYP, ENCFF782WSP 7181996 ENCODE Processing Pipeline 901002ba0cab17d09483751269240b62 https://www.encodeproject.org/files/ENCFF035JPP/@@download/ENCFF035JPP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF247YQR bigBed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF066DHI 11099967 ENCODE Processing Pipeline eb4e71628910dc9a33aafff1514a6eae https://www.encodeproject.org/files/ENCFF247YQR/@@download/ENCFF247YQR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF170CMT bigBed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF955QVX 11125733 ENCODE Processing Pipeline 36fb149161393650f3240288ec4485a4 https://www.encodeproject.org/files/ENCFF170CMT/@@download/ENCFF170CMT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF129GZP bed narrowPeak conservative idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF035JPP, ENCFF066DHI, ENCFF955QVX 48537 ENCODE Processing Pipeline 631d02166a33effcfaca65c16fefd1b7 https://www.encodeproject.org/files/ENCFF129GZP/@@download/ENCFF129GZP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF204EMB bigBed narrowPeak conservative idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF129GZP 147542 ENCODE Processing Pipeline de392188664e3f075b4755febc953333 https://www.encodeproject.org/files/ENCFF204EMB/@@download/ENCFF204EMB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF605RAD bed narrowPeak optimal idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF035JPP, ENCFF066DHI, ENCFF955QVX 74867 ENCODE Processing Pipeline 19fde26954b9667231bc493ff34fc0b2 https://www.encodeproject.org/files/ENCFF605RAD/@@download/ENCFF605RAD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF564TWT bigBed narrowPeak optimal idr thresholded peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF605RAD 190413 ENCODE Processing Pipeline 04b7a0e130a38a7a5e881107d6625c33 https://www.encodeproject.org/files/ENCFF564TWT/@@download/ENCFF564TWT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF139UVY bigBed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF035JPP 13081461 ENCODE Processing Pipeline a1f8e86ea915157e47b04b34e73ce9e9 https://www.encodeproject.org/files/ENCFF139UVY/@@download/ENCFF139UVY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF043DWE fastq reads ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF537WRB 2815771329 Michael Snyder, Stanford 7b32fd0a83d6429b61148210d337443a SRA:SRR6213142 https://www.encodeproject.org/files/ENCFF043DWE/@@download/ENCFF043DWE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF103KFM fastq reads ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF891ZQL 2161436455 Michael Snyder, Stanford 50b9ffa30a7aa6dc6e0286da58582a9c SRA:SRR6213141 https://www.encodeproject.org/files/ENCFF103KFM/@@download/ENCFF103KFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF537WRB fastq reads ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF043DWE 2699824301 Michael Snyder, Stanford 53df829bc6fa17307efc68ee1940e360 SRA:SRR6213142 https://www.encodeproject.org/files/ENCFF537WRB/@@download/ENCFF537WRB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF891ZQL fastq reads ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF103KFM 2194579775 Michael Snyder, Stanford e4a556f2fb3818401bc907e18bf15119 SRA:SRR6213141 https://www.encodeproject.org/files/ENCFF891ZQL/@@download/ENCFF891ZQL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF621WGR bam unfiltered alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103KFM, ENCFF807MUK, ENCFF891ZQL 4444864615 ENCODE Processing Pipeline 6291d9745a081fc09c346c32e8e3335c https://www.encodeproject.org/files/ENCFF621WGR/@@download/ENCFF621WGR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF041ENO bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103KFM, ENCFF807MUK, ENCFF891ZQL 3960462119 ENCODE Processing Pipeline 8453a59bd131b710ed99b3845700877a https://www.encodeproject.org/files/ENCFF041ENO/@@download/ENCFF041ENO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF069QOR bam unfiltered alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103KFM, ENCFF643CGH, ENCFF891ZQL 4449604729 ENCODE Processing Pipeline 940a7124af1002d1b5e692d5a780ca13 https://www.encodeproject.org/files/ENCFF069QOR/@@download/ENCFF069QOR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF187CYO bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103KFM, ENCFF643CGH, ENCFF891ZQL 3961579676 ENCODE Processing Pipeline 463df80207f95786e99ced52adf944a3 https://www.encodeproject.org/files/ENCFF187CYO/@@download/ENCFF187CYO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF834YVG bam unfiltered alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF043DWE, ENCFF537WRB, ENCFF807MUK 6095553223 ENCODE Processing Pipeline 14026bf18510029bd750ed8cbe91c91c https://www.encodeproject.org/files/ENCFF834YVG/@@download/ENCFF834YVG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF147BZB bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF043DWE, ENCFF537WRB, ENCFF807MUK 4909953608 ENCODE Processing Pipeline 807fdd1df1b920ff1aaecd3e47af03c6 https://www.encodeproject.org/files/ENCFF147BZB/@@download/ENCFF147BZB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF578NVE bam unfiltered alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF043DWE, ENCFF537WRB, ENCFF643CGH 6101592373 ENCODE Processing Pipeline 2b5953bd62a90295ccb8a7c431615d73 https://www.encodeproject.org/files/ENCFF578NVE/@@download/ENCFF578NVE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF163EWS bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF043DWE, ENCFF537WRB, ENCFF643CGH 4912000811 ENCODE Processing Pipeline fef45c45a613eb958c71b6c4ea47481d https://www.encodeproject.org/files/ENCFF163EWS/@@download/ENCFF163EWS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF923LEM bigWig signal p-value ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF147BZB 1413302955 ENCODE Processing Pipeline 5a1d65c020c898d490e0eb30e4e77cc2 https://www.encodeproject.org/files/ENCFF923LEM/@@download/ENCFF923LEM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF057YPR bigWig signal p-value ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF041ENO, ENCFF147BZB 1663488374 ENCODE Processing Pipeline a518a64b64fcfef5fa808447cf2f06f7 https://www.encodeproject.org/files/ENCFF057YPR/@@download/ENCFF057YPR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF602WRK bigWig signal p-value ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF187CYO 1181076087 ENCODE Processing Pipeline bfe825b18306487263ea99ad07fda50e https://www.encodeproject.org/files/ENCFF602WRK/@@download/ENCFF602WRK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF512BXG bigWig signal p-value ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF041ENO 1252130697 ENCODE Processing Pipeline 606e68b7cd3de20e165e0b9adbf6fddc https://www.encodeproject.org/files/ENCFF512BXG/@@download/ENCFF512BXG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF065LQK bigWig fold change over control ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF147BZB 1367056413 ENCODE Processing Pipeline 04f52ac9b4ad61185730ecdaf1048962 https://www.encodeproject.org/files/ENCFF065LQK/@@download/ENCFF065LQK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF148RKX bigWig fold change over control ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF041ENO 1316774770 ENCODE Processing Pipeline d664a8415f5288355fd01f851ed4d610 https://www.encodeproject.org/files/ENCFF148RKX/@@download/ENCFF148RKX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF293IQP bigWig signal p-value ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF163EWS, ENCFF187CYO 1703616033 ENCODE Processing Pipeline b5da8038df498e758e335cf2ae98fcb6 https://www.encodeproject.org/files/ENCFF293IQP/@@download/ENCFF293IQP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF325OZZ bigWig signal p-value ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF163EWS 1424464982 ENCODE Processing Pipeline d2aa64af9c5f6df1c5f71e310e47d3e0 https://www.encodeproject.org/files/ENCFF325OZZ/@@download/ENCFF325OZZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF456LAV bigWig fold change over control ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF041ENO, ENCFF147BZB 1890704281 ENCODE Processing Pipeline 51cfbdd9910dff8f59b732d26bc5faa5 https://www.encodeproject.org/files/ENCFF456LAV/@@download/ENCFF456LAV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF170KII bigBed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF402FJT 13279348 ENCODE Processing Pipeline 0a6e0cb4155de2f1b20413f7e4b488ba https://www.encodeproject.org/files/ENCFF170KII/@@download/ENCFF170KII.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF476VJL bigWig fold change over control ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF163EWS 1365041284 ENCODE Processing Pipeline a91fa2535f660f513ac15903c74049bb https://www.encodeproject.org/files/ENCFF476VJL/@@download/ENCFF476VJL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF493MOX bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF041ENO, ENCFF147BZB 7185465 ENCODE Processing Pipeline 5be1297865b137f4c70741557625bfe9 https://www.encodeproject.org/files/ENCFF493MOX/@@download/ENCFF493MOX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF434GNZ bed narrowPeak conservative idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF402FJT, ENCFF493MOX, ENCFF860OID 131158 ENCODE Processing Pipeline ee25184f3f7b69e271236e36435f9ac7 https://www.encodeproject.org/files/ENCFF434GNZ/@@download/ENCFF434GNZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF663IOQ bigBed narrowPeak conservative idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF434GNZ 279658 ENCODE Processing Pipeline d19422422531531b4d08f194a317f47c https://www.encodeproject.org/files/ENCFF663IOQ/@@download/ENCFF663IOQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF908MBT bed narrowPeak optimal idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF402FJT, ENCFF493MOX, ENCFF860OID 219189 ENCODE Processing Pipeline ee6f322404301115d9357558f6008486 https://www.encodeproject.org/files/ENCFF908MBT/@@download/ENCFF908MBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF031TDU bigBed narrowPeak optimal idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF908MBT 487688 ENCODE Processing Pipeline 276c33f5d9d51f7e565170de820d3435 https://www.encodeproject.org/files/ENCFF031TDU/@@download/ENCFF031TDU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF032BRH bigWig fold change over control ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF187CYO 1293983694 ENCODE Processing Pipeline 174307fed33c67a6bf67b5baf0720d6a https://www.encodeproject.org/files/ENCFF032BRH/@@download/ENCFF032BRH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF402FJT bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF041ENO 6889934 ENCODE Processing Pipeline 11bb442193c80549e3737446f44cca53 https://www.encodeproject.org/files/ENCFF402FJT/@@download/ENCFF402FJT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF860OID bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF147BZB 6526661 ENCODE Processing Pipeline 91a28b0517017c1a0db6699f4f4f5f56 https://www.encodeproject.org/files/ENCFF860OID/@@download/ENCFF860OID.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF929HER bigBed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF860OID 13485492 ENCODE Processing Pipeline d420b6ab306614ee9460935170026411 https://www.encodeproject.org/files/ENCFF929HER/@@download/ENCFF929HER.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF183VAK bigBed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF493MOX 13213579 ENCODE Processing Pipeline 89829b90d584a717d985dde5097cb1e3 https://www.encodeproject.org/files/ENCFF183VAK/@@download/ENCFF183VAK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF201IHK bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF163EWS, ENCFF187CYO 7186590 ENCODE Processing Pipeline 799a276d137ef7a1aac7eae0f6198e94 https://www.encodeproject.org/files/ENCFF201IHK/@@download/ENCFF201IHK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF697GIW bigBed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF543FSN 13288138 ENCODE Processing Pipeline ecb8422a792531cc3a829b66da2ff27b https://www.encodeproject.org/files/ENCFF697GIW/@@download/ENCFF697GIW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF025YPQ bigWig fold change over control ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF163EWS, ENCFF187CYO 1878744120 ENCODE Processing Pipeline 8f8d2936d4dcc5aa037281ce7ac6d200 https://www.encodeproject.org/files/ENCFF025YPQ/@@download/ENCFF025YPQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF543FSN bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF187CYO 6886353 ENCODE Processing Pipeline 5ecc062362d81144543929ad651a39ee https://www.encodeproject.org/files/ENCFF543FSN/@@download/ENCFF543FSN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF848BAX bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF163EWS 6526804 ENCODE Processing Pipeline 5da1115a30a2dad9c3e2e91b5dc9f7c2 https://www.encodeproject.org/files/ENCFF848BAX/@@download/ENCFF848BAX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF130OGF bed narrowPeak optimal idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF201IHK, ENCFF419RSJ, ENCFF543FSN, ENCFF848BAX 227582 ENCODE Processing Pipeline 87135d79aed1110729c0d8110438c33e https://www.encodeproject.org/files/ENCFF130OGF/@@download/ENCFF130OGF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF872QNM bigBed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF848BAX 13496434 ENCODE Processing Pipeline aa5482b59713838a66dad31dc45672f9 https://www.encodeproject.org/files/ENCFF872QNM/@@download/ENCFF872QNM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF835ECQ bigBed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF201IHK 13223452 ENCODE Processing Pipeline 8e814af5c09909a569e9086b7f4884dd https://www.encodeproject.org/files/ENCFF835ECQ/@@download/ENCFF835ECQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF791PWY bigBed narrowPeak optimal idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF130OGF 501632 ENCODE Processing Pipeline a01130f268814f0a0009d5bfb31b7c69 https://www.encodeproject.org/files/ENCFF791PWY/@@download/ENCFF791PWY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF608WJK bed narrowPeak conservative idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF201IHK, ENCFF419RSJ, ENCFF543FSN, ENCFF848BAX 128998 ENCODE Processing Pipeline 6a8c461141ce603b72a8bd82455fbda6 https://www.encodeproject.org/files/ENCFF608WJK/@@download/ENCFF608WJK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF070PXM bigBed narrowPeak conservative idr thresholded peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF608WJK 275717 ENCODE Processing Pipeline 9f4639e5a29fbd46cfbf9296a8e56caa https://www.encodeproject.org/files/ENCFF070PXM/@@download/ENCFF070PXM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF649MUT fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF079AYE 6857462476 Michael Snyder, Stanford 8fa0a31390261d4a9f8f3c5e964b9dc7 SRA:SRR5111374 https://www.encodeproject.org/files/ENCFF649MUT/@@download/ENCFF649MUT.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF079AYE fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF649MUT 6391789569 Michael Snyder, Stanford 156bba2bf674e8195b4794d3777eecea SRA:SRR5111374 https://www.encodeproject.org/files/ENCFF079AYE/@@download/ENCFF079AYE.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF973RUL fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF271TDT 1483608175 Michael Snyder, Stanford ee82e57492989e4f118a8bf848af7daf SRA:SRR5111373 https://www.encodeproject.org/files/ENCFF973RUL/@@download/ENCFF973RUL.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF271TDT fastq reads ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF973RUL 1403541887 Michael Snyder, Stanford 58519be378d76b9949efdc79dfbda63b SRA:SRR5111373 https://www.encodeproject.org/files/ENCFF271TDT/@@download/ENCFF271TDT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF652NWL bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF643CGH, ENCFF973RUL 2884938764 ENCODE Processing Pipeline 338e02f45aef491be101110a2638047a https://www.encodeproject.org/files/ENCFF652NWL/@@download/ENCFF652NWL.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF686LHL bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF807MUK, ENCFF973RUL 2883696795 ENCODE Processing Pipeline 17c0d78f31db64de6f52d3b44ec5c3de https://www.encodeproject.org/files/ENCFF686LHL/@@download/ENCFF686LHL.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF888AIA bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF643CGH, ENCFF973RUL 1982534522 ENCODE Processing Pipeline 64c401591fb1e7359d828ee854358cc7 https://www.encodeproject.org/files/ENCFF888AIA/@@download/ENCFF888AIA.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF955NYD bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF807MUK, ENCFF973RUL 1979062499 ENCODE Processing Pipeline 58b66f78549e8e8631cac917354bbb71 https://www.encodeproject.org/files/ENCFF955NYD/@@download/ENCFF955NYD.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF029UNK bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF643CGH, ENCFF649MUT 11282277692 ENCODE Processing Pipeline 651692b6f397d097c551ce215b9965d0 https://www.encodeproject.org/files/ENCFF029UNK/@@download/ENCFF029UNK.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF869WVJ bam unfiltered alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF649MUT, ENCFF807MUK 11284170677 ENCODE Processing Pipeline df93096c954b67b63784f7c526527832 https://www.encodeproject.org/files/ENCFF869WVJ/@@download/ENCFF869WVJ.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF975GPP bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF649MUT, ENCFF807MUK 6751156691 ENCODE Processing Pipeline 217dbd0e7f656442d78d1c068589f907 https://www.encodeproject.org/files/ENCFF975GPP/@@download/ENCFF975GPP.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF178EBR bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF643CGH, ENCFF649MUT 6761714096 ENCODE Processing Pipeline dd4f27a425c9c572443ee8b0935657ca https://www.encodeproject.org/files/ENCFF178EBR/@@download/ENCFF178EBR.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF696EXT bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF955NYD, ENCFF975GPP 2386991407 ENCODE Processing Pipeline 8b463cd983be71e5d7359f2d3268ebf6 https://www.encodeproject.org/files/ENCFF696EXT/@@download/ENCFF696EXT.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF281BES bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 859000947 ENCODE Processing Pipeline 923668dbb80ed7e69a86a4879b796006 https://www.encodeproject.org/files/ENCFF281BES/@@download/ENCFF281BES.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF235IVF bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 2219026246 ENCODE Processing Pipeline 0383fa0514ee370106bfc0c40d10ddf7 https://www.encodeproject.org/files/ENCFF235IVF/@@download/ENCFF235IVF.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF653WYH bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 2259158581 ENCODE Processing Pipeline 585fa0d5aadcc5eb260e1478d72e0ce3 https://www.encodeproject.org/files/ENCFF653WYH/@@download/ENCFF653WYH.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF466GWH bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 770823474 ENCODE Processing Pipeline 7aa9d507623732064683e47019259b15 https://www.encodeproject.org/files/ENCFF466GWH/@@download/ENCFF466GWH.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF021OHP bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF955NYD, ENCFF975GPP 2436571677 ENCODE Processing Pipeline 5775e3d7fe2ecc6e7d382f4c21ab1f5b https://www.encodeproject.org/files/ENCFF021OHP/@@download/ENCFF021OHP.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF593KRH bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 7255853 ENCODE Processing Pipeline 18235deea7ec222cc38f7cf3a732ed11 https://www.encodeproject.org/files/ENCFF593KRH/@@download/ENCFF593KRH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF264HQZ bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF593KRH 13197655 ENCODE Processing Pipeline a75571d41d5493d61a8d90ca9cc32165 https://www.encodeproject.org/files/ENCFF264HQZ/@@download/ENCFF264HQZ.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF417RTA bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF494SRY 13213619 ENCODE Processing Pipeline 1f775b6df48261187cc16f439ea0ed2c https://www.encodeproject.org/files/ENCFF417RTA/@@download/ENCFF417RTA.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF494SRY bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 6674264 ENCODE Processing Pipeline 505cee6a36e8bd3c4031c86ccbe29baf https://www.encodeproject.org/files/ENCFF494SRY/@@download/ENCFF494SRY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF407KWG bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF901CND, ENCFF955NYD, ENCFF975GPP 7272033 ENCODE Processing Pipeline 5befc8a42e81289e98fcff6c4b10823f https://www.encodeproject.org/files/ENCFF407KWG/@@download/ENCFF407KWG.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF966RPL bed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF407KWG, ENCFF494SRY, ENCFF593KRH 789765 ENCODE Processing Pipeline 44b35b24f90013b12bb762c2c84bd65c https://www.encodeproject.org/files/ENCFF966RPL/@@download/ENCFF966RPL.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF249RJN bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF407KWG 13125446 ENCODE Processing Pipeline ea3e0df92c9cd5f7f7840b17dae0b77a https://www.encodeproject.org/files/ENCFF249RJN/@@download/ENCFF249RJN.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF197TYK bed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF407KWG, ENCFF494SRY, ENCFF593KRH 699697 ENCODE Processing Pipeline ab295d1f6e13de16b0486d14c6f2b109 https://www.encodeproject.org/files/ENCFF197TYK/@@download/ENCFF197TYK.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF361YNB bigBed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF315RFC 1321046 ENCODE Processing Pipeline e55d20aea781766441bda6f99c269e0a https://www.encodeproject.org/files/ENCFF361YNB/@@download/ENCFF361YNB.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched status, mismatched file status ENCFF697OZC bigBed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF534OTG 1453485 ENCODE Processing Pipeline 324b6f0edc7c179ace120888075a2cb0 https://www.encodeproject.org/files/ENCFF697OZC/@@download/ENCFF697OZC.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched status, mismatched file status ENCFF821ABV bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR 2235929229 ENCODE Processing Pipeline 086c2a00ef08e812b28853a8d64ac73e https://www.encodeproject.org/files/ENCFF821ABV/@@download/ENCFF821ABV.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF671TFA bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF888AIA 938936704 ENCODE Processing Pipeline 13c161eef4a29f22e2eee0491a19254a https://www.encodeproject.org/files/ENCFF671TFA/@@download/ENCFF671TFA.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF349IDH bigWig signal p-value ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR, ENCFF888AIA 2376820857 ENCODE Processing Pipeline 2f20df7bafd4ef11a7bd1abe3eb2a253 https://www.encodeproject.org/files/ENCFF349IDH/@@download/ENCFF349IDH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF903XMZ bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR 2248169771 ENCODE Processing Pipeline af6744f6d3a1b60fabe525578c58ffc8 https://www.encodeproject.org/files/ENCFF903XMZ/@@download/ENCFF903XMZ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF297KCJ bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF888AIA 769393386 ENCODE Processing Pipeline 3d22bdf39c343e5e0f9f93abf5fa771b https://www.encodeproject.org/files/ENCFF297KCJ/@@download/ENCFF297KCJ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF353YGE bigWig fold change over control ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR, ENCFF888AIA 2425481524 ENCODE Processing Pipeline a78b66f6a74b81d0b6f3498b193a2da0 https://www.encodeproject.org/files/ENCFF353YGE/@@download/ENCFF353YGE.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF955MTU bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF888AIA 6576463 ENCODE Processing Pipeline 88774ac4d159e8b3ba31ba3e0d2b69c9 https://www.encodeproject.org/files/ENCFF955MTU/@@download/ENCFF955MTU.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF585OMK bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF467TNA 13191310 ENCODE Processing Pipeline 72de19bffff446b4b405377f31cd8a3e https://www.encodeproject.org/files/ENCFF585OMK/@@download/ENCFF585OMK.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF794YZP bigBed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF006OFJ 1667422 ENCODE Processing Pipeline b6bb89e6567c23c17030b64394cc20b5 https://www.encodeproject.org/files/ENCFF794YZP/@@download/ENCFF794YZP.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF467TNA bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR, ENCFF888AIA 7331128 ENCODE Processing Pipeline 921dd0ff2a509280aad3f4f3027f901f https://www.encodeproject.org/files/ENCFF467TNA/@@download/ENCFF467TNA.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF587POH bed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF467TNA, ENCFF590DZM, ENCFF955MTU 820188 ENCODE Processing Pipeline 29d16fcad300286df212197e84c30e14 https://www.encodeproject.org/files/ENCFF587POH/@@download/ENCFF587POH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF006OFJ bed narrowPeak conservative idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF467TNA, ENCFF590DZM, ENCFF955MTU 717913 ENCODE Processing Pipeline 7ddf9851ebef8a41e85cf4b0ab25c18a https://www.encodeproject.org/files/ENCFF006OFJ/@@download/ENCFF006OFJ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF590DZM bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF178EBR, ENCFF322NTO, ENCFF666ATR 7255148 ENCODE Processing Pipeline 4f83e830b0ca4144fcc096c0140b6d50 https://www.encodeproject.org/files/ENCFF590DZM/@@download/ENCFF590DZM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF784JSA bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF590DZM 13205263 ENCODE Processing Pipeline 241604c74de6fe33e0b0224f3b17c570 https://www.encodeproject.org/files/ENCFF784JSA/@@download/ENCFF784JSA.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF781QQN bigBed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF955MTU 13171830 ENCODE Processing Pipeline fe43a044d3dfc8022085b7ac50b22871 https://www.encodeproject.org/files/ENCFF781QQN/@@download/ENCFF781QQN.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF706RST bigBed narrowPeak optimal idr thresholded peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF587POH 1852454 ENCODE Processing Pipeline d5b5c7a93ff99e17b9620821fd862e19 https://www.encodeproject.org/files/ENCFF706RST/@@download/ENCFF706RST.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF445LTV fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 1 100 paired-ended 1 ENCFF159UKF 2038515729 Michael Snyder, Stanford 6cc153eada88b46a0d44af9bef93a141 SRA:SRR6213398 https://www.encodeproject.org/files/ENCFF445LTV/@@download/ENCFF445LTV.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF159UKF fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 1 100 paired-ended 2 ENCFF445LTV 2476289480 Michael Snyder, Stanford f952cc540fbd3616bf47f7077d9f8abe SRA:SRR6213398 https://www.encodeproject.org/files/ENCFF159UKF/@@download/ENCFF159UKF.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF540RXL fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 1 ENCFF907SBN 1645076999 Michael Snyder, Stanford 5cfd003dea8bdd05c8a56736c50405de SRA:SRR6213399 https://www.encodeproject.org/files/ENCFF540RXL/@@download/ENCFF540RXL.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF907SBN fastq reads ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 2 ENCFF540RXL 1936116544 Michael Snyder, Stanford 7bf82dc37142d3476377dec6af1ae225 SRA:SRR6213399 https://www.encodeproject.org/files/ENCFF907SBN/@@download/ENCFF907SBN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF649NJP bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF643CGH, ENCFF907SBN 3421802092 ENCODE Processing Pipeline 6264cf1645302d0c9218efaa92789a12 https://www.encodeproject.org/files/ENCFF649NJP/@@download/ENCFF649NJP.bam GRCh38 released mild to moderate bottlenecking ENCFF599CQU bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF643CGH, ENCFF907SBN 2659275111 ENCODE Processing Pipeline 045df7d2b03ec7c602f283a8eab11391 https://www.encodeproject.org/files/ENCFF599CQU/@@download/ENCFF599CQU.bam GRCh38 released mild to moderate bottlenecking ENCFF792QLV bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF643CGH 4339183583 ENCODE Processing Pipeline 5a5e93ba31ece6b741655d2b6a093d31 https://www.encodeproject.org/files/ENCFF792QLV/@@download/ENCFF792QLV.bam GRCh38 released mild to moderate bottlenecking ENCFF688OKC bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF643CGH 3132644010 ENCODE Processing Pipeline b7423388b2388d30c2bd8f680546b806 https://www.encodeproject.org/files/ENCFF688OKC/@@download/ENCFF688OKC.bam GRCh38 released mild to moderate bottlenecking ENCFF424RSU bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF322NTO, ENCFF688OKC 1166559760 ENCODE Processing Pipeline 99541f16ebc941e8ac643199492c88e1 https://www.encodeproject.org/files/ENCFF424RSU/@@download/ENCFF424RSU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF518XFZ bigBed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF245FMD 664559 ENCODE Processing Pipeline 5519d7dc41fa4a02ca7612268bcfed52 https://www.encodeproject.org/files/ENCFF518XFZ/@@download/ENCFF518XFZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF049PPV bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF599CQU, ENCFF666ATR 1053248148 ENCODE Processing Pipeline 2eed3822f0318005f040121695e34e93 https://www.encodeproject.org/files/ENCFF049PPV/@@download/ENCFF049PPV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF473QPR bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF322NTO, ENCFF599CQU, ENCFF666ATR, ENCFF688OKC 1780918827 ENCODE Processing Pipeline d4080eb1f7073af8c9fb827df4b5c3d4 https://www.encodeproject.org/files/ENCFF473QPR/@@download/ENCFF473QPR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF417XWN bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF322NTO, ENCFF688OKC 1105723111 ENCODE Processing Pipeline 03fee8be4a19560bc221da93aae63523 https://www.encodeproject.org/files/ENCFF417XWN/@@download/ENCFF417XWN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF383MVD bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF599CQU, ENCFF666ATR 978958118 ENCODE Processing Pipeline 443e2fd3aa9feecebc228b7e0a8fbf3c https://www.encodeproject.org/files/ENCFF383MVD/@@download/ENCFF383MVD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF936AEZ bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF322NTO, ENCFF599CQU, ENCFF666ATR, ENCFF688OKC 1976785363 ENCODE Processing Pipeline d3d61a56cc80e9ddcea1739593926f13 https://www.encodeproject.org/files/ENCFF936AEZ/@@download/ENCFF936AEZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF605KHC bed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF322NTO, ENCFF688OKC 6125803 ENCODE Processing Pipeline bf665205daa769aa72466f3308353ca9 https://www.encodeproject.org/files/ENCFF605KHC/@@download/ENCFF605KHC.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF323EFK bed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF599CQU, ENCFF666ATR 6186551 ENCODE Processing Pipeline d150cb49d238aa6900a7c5fac6c8c6ac https://www.encodeproject.org/files/ENCFF323EFK/@@download/ENCFF323EFK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF149BIZ bed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF322NTO, ENCFF599CQU, ENCFF666ATR, ENCFF688OKC 7163127 ENCODE Processing Pipeline ac1a09f103e8e55a1e4d74e8b98385ec https://www.encodeproject.org/files/ENCFF149BIZ/@@download/ENCFF149BIZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF502JDM bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF605KHC 13443219 ENCODE Processing Pipeline f33e98d168478f8b17506d5c04724dac https://www.encodeproject.org/files/ENCFF502JDM/@@download/ENCFF502JDM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF597OQT bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF323EFK 13251077 ENCODE Processing Pipeline 5615e30d0c81e0cde0ac786c1e60f6a5 https://www.encodeproject.org/files/ENCFF597OQT/@@download/ENCFF597OQT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF317IWJ bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF149BIZ 13262086 ENCODE Processing Pipeline 9303ff4350caac9ce2109d18e2bdaafe https://www.encodeproject.org/files/ENCFF317IWJ/@@download/ENCFF317IWJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF245FMD bed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF149BIZ, ENCFF323EFK, ENCFF419RSJ, ENCFF605KHC 297707 ENCODE Processing Pipeline 231cca593c2e7bfc3efd350281f24e7b https://www.encodeproject.org/files/ENCFF245FMD/@@download/ENCFF245FMD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF725YZH bed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF149BIZ, ENCFF323EFK, ENCFF419RSJ, ENCFF605KHC 451504 ENCODE Processing Pipeline 4f1057c915b4de1b353b6222ef59be36 https://www.encodeproject.org/files/ENCFF725YZH/@@download/ENCFF725YZH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF426GTD bigBed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF725YZH 920655 ENCODE Processing Pipeline 55574a2b0fde0b658b95069a729d3260 https://www.encodeproject.org/files/ENCFF426GTD/@@download/ENCFF426GTD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF518TTP bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF807MUK, ENCFF907SBN 3421165884 ENCODE Processing Pipeline 42b17890bedbef0b65e2a6db8c9ad0bb https://www.encodeproject.org/files/ENCFF518TTP/@@download/ENCFF518TTP.bam hg19 released mild to moderate bottlenecking ENCFF650SPH bam unfiltered alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF807MUK 4339211144 ENCODE Processing Pipeline 31497d63d3b744c372f29be2cb561590 https://www.encodeproject.org/files/ENCFF650SPH/@@download/ENCFF650SPH.bam hg19 released mild to moderate bottlenecking ENCFF665UFO bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF807MUK, ENCFF907SBN 2655828332 ENCODE Processing Pipeline 0c77a8ebe538832849943a744402b18d https://www.encodeproject.org/files/ENCFF665UFO/@@download/ENCFF665UFO.bam hg19 released mild to moderate bottlenecking ENCFF209ASC bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF807MUK 3125279794 ENCODE Processing Pipeline d8bea431c1c6e842615615b72beb1987 https://www.encodeproject.org/files/ENCFF209ASC/@@download/ENCFF209ASC.bam hg19 released mild to moderate bottlenecking ENCFF090IGZ bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF209ASC, ENCFF592WAL 950898411 ENCODE Processing Pipeline b3c306af9bedf98587de2ce486508b0c https://www.encodeproject.org/files/ENCFF090IGZ/@@download/ENCFF090IGZ.bigWig hg19 released mild to moderate bottlenecking ENCFF629IWD bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF665UFO, ENCFF901CND 1021385405 ENCODE Processing Pipeline a83ca62ededb91325cc93ad37fbbea78 https://www.encodeproject.org/files/ENCFF629IWD/@@download/ENCFF629IWD.bigWig hg19 released mild to moderate bottlenecking ENCFF094OMB bigWig signal p-value ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF209ASC, ENCFF592WAL, ENCFF665UFO, ENCFF901CND 1611522597 ENCODE Processing Pipeline 575f44a1c81ec4bbf7a311106fb351fa https://www.encodeproject.org/files/ENCFF094OMB/@@download/ENCFF094OMB.bigWig hg19 released mild to moderate bottlenecking ENCFF701BMB bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF209ASC, ENCFF592WAL 1105983127 ENCODE Processing Pipeline 313ef80cbdfc17d9a072b906d42743c8 https://www.encodeproject.org/files/ENCFF701BMB/@@download/ENCFF701BMB.bigWig hg19 released mild to moderate bottlenecking ENCFF296JRZ bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF665UFO, ENCFF901CND 977637104 ENCODE Processing Pipeline 3f7f5aaf78d413bfc095dba0d42d502b https://www.encodeproject.org/files/ENCFF296JRZ/@@download/ENCFF296JRZ.bigWig hg19 released mild to moderate bottlenecking ENCFF184PLB bigWig fold change over control ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF209ASC, ENCFF592WAL, ENCFF665UFO, ENCFF901CND 1993191169 ENCODE Processing Pipeline d47404672534dea7d1a693352486d7f6 https://www.encodeproject.org/files/ENCFF184PLB/@@download/ENCFF184PLB.bigWig hg19 released mild to moderate bottlenecking ENCFF084PVB bed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF209ASC, ENCFF592WAL 6124128 ENCODE Processing Pipeline f6e55c76acb59c0fc90e577d41a0e122 https://www.encodeproject.org/files/ENCFF084PVB/@@download/ENCFF084PVB.bed.gz hg19 released mild to moderate bottlenecking ENCFF866OLZ bed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF665UFO, ENCFF901CND 6220898 ENCODE Processing Pipeline 415cba7801aa8315edc91159750daa79 https://www.encodeproject.org/files/ENCFF866OLZ/@@download/ENCFF866OLZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF747JGV bed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF209ASC, ENCFF592WAL, ENCFF665UFO, ENCFF901CND 7147822 ENCODE Processing Pipeline 96a4a2c79116c6705032ba04a3ad548b https://www.encodeproject.org/files/ENCFF747JGV/@@download/ENCFF747JGV.bed.gz hg19 released mild to moderate bottlenecking ENCFF586ERO bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 ENCFF084PVB 13437466 ENCODE Processing Pipeline a61223cef2536cccb70c2456abb607df https://www.encodeproject.org/files/ENCFF586ERO/@@download/ENCFF586ERO.bigBed hg19 released mild to moderate bottlenecking ENCFF170UXI bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 ENCFF866OLZ 13280831 ENCODE Processing Pipeline eab75c8dbbf059fd648eaf9513d12f2c https://www.encodeproject.org/files/ENCFF170UXI/@@download/ENCFF170UXI.bigBed hg19 released mild to moderate bottlenecking ENCFF125KJK bigBed narrowPeak peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF747JGV 13236307 ENCODE Processing Pipeline 15882f14cc8438646932a7c44ffdbe69 https://www.encodeproject.org/files/ENCFF125KJK/@@download/ENCFF125KJK.bigBed hg19 released mild to moderate bottlenecking ENCFF748WOQ bed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF001TDO, ENCFF084PVB, ENCFF747JGV, ENCFF866OLZ 293463 ENCODE Processing Pipeline 8e3e9a415d646cb89c43d807791c1043 https://www.encodeproject.org/files/ENCFF748WOQ/@@download/ENCFF748WOQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF613NTN bigBed narrowPeak conservative idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF748WOQ 658917 ENCODE Processing Pipeline 5774c232dc3efe07136dd8454e80b810 https://www.encodeproject.org/files/ENCFF613NTN/@@download/ENCFF613NTN.bigBed hg19 released mild to moderate bottlenecking ENCFF012JXJ bed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF001TDO, ENCFF084PVB, ENCFF747JGV, ENCFF866OLZ 440429 ENCODE Processing Pipeline 444df22c98d4fcff23ed0065c0dcd22e https://www.encodeproject.org/files/ENCFF012JXJ/@@download/ENCFF012JXJ.bed.gz hg19 released mild to moderate bottlenecking ENCFF154RKL bigBed narrowPeak optimal idr thresholded peaks ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3, 4 ENCFF012JXJ 905993 ENCODE Processing Pipeline 028bc7bb007592dcaf0a50ee1d95642f https://www.encodeproject.org/files/ENCFF154RKL/@@download/ENCFF154RKL.bigBed hg19 released mild to moderate bottlenecking ENCFF309EQC fastq reads ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF605MKF 3077929249 Michael Snyder, Stanford 5dea5c14cc16eefedcf640a5fb29f836 SRA:SRR6214107 https://www.encodeproject.org/files/ENCFF309EQC/@@download/ENCFF309EQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF825HMN fastq reads ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF240ZBS 2676667377 Michael Snyder, Stanford 83742e803e5fe2ef439e7eb426b8eeda SRA:SRR6214108 https://www.encodeproject.org/files/ENCFF825HMN/@@download/ENCFF825HMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF240ZBS fastq reads ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF825HMN 2679507058 Michael Snyder, Stanford 2bd17b79ce7adda3bf52630c5c103e80 SRA:SRR6214108 https://www.encodeproject.org/files/ENCFF240ZBS/@@download/ENCFF240ZBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF605MKF fastq reads ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF309EQC 3179386567 Michael Snyder, Stanford b048acc3ffc9251f12e0baaa391b01b8 SRA:SRR6214107 https://www.encodeproject.org/files/ENCFF605MKF/@@download/ENCFF605MKF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF043WRO bam unfiltered alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF240ZBS, ENCFF643CGH, ENCFF825HMN 5862803418 ENCODE Processing Pipeline b53eec63e17e9993576ad926f868e8b5 https://www.encodeproject.org/files/ENCFF043WRO/@@download/ENCFF043WRO.bam GRCh38 released ENCFF996ASC bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF240ZBS, ENCFF643CGH, ENCFF825HMN 4929089090 ENCODE Processing Pipeline f1fc2866405a787c610bf4e185a5f7c8 https://www.encodeproject.org/files/ENCFF996ASC/@@download/ENCFF996ASC.bam GRCh38 released ENCFF585TAQ bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF240ZBS, ENCFF807MUK, ENCFF825HMN 4919594687 ENCODE Processing Pipeline e9df977ea8bbcfcf6486a3b94d68ca04 https://www.encodeproject.org/files/ENCFF585TAQ/@@download/ENCFF585TAQ.bam hg19 released ENCFF623VRM bam unfiltered alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF240ZBS, ENCFF807MUK, ENCFF825HMN 5852606220 ENCODE Processing Pipeline c31a9f6608bc8dacb0ce69b2feeb1e64 https://www.encodeproject.org/files/ENCFF623VRM/@@download/ENCFF623VRM.bam hg19 released ENCFF838PTN bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF309EQC, ENCFF605MKF, ENCFF807MUK 5686540256 ENCODE Processing Pipeline a8fb0446b45129c47bd63f6cc678fee8 https://www.encodeproject.org/files/ENCFF838PTN/@@download/ENCFF838PTN.bam hg19 released ENCFF994JQJ bam unfiltered alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF309EQC, ENCFF605MKF, ENCFF643CGH 6799317244 ENCODE Processing Pipeline 5c30793c2d373251f71ab6d1c4ee208b https://www.encodeproject.org/files/ENCFF994JQJ/@@download/ENCFF994JQJ.bam GRCh38 released ENCFF120FDJ bam unfiltered alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF309EQC, ENCFF605MKF, ENCFF807MUK 6788296134 ENCODE Processing Pipeline 1fc6ca370d2d94b48c147ba509a5b1a6 https://www.encodeproject.org/files/ENCFF120FDJ/@@download/ENCFF120FDJ.bam hg19 released ENCFF939AYG bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF309EQC, ENCFF605MKF, ENCFF643CGH 5697305746 ENCODE Processing Pipeline cd4f53196133826c1b3bbd9d9d4ed931 https://www.encodeproject.org/files/ENCFF939AYG/@@download/ENCFF939AYG.bam GRCh38 released ENCFF850ACK bigWig signal p-value ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF939AYG, ENCFF996ASC 1848619092 ENCODE Processing Pipeline 3cfe40f67633beff0b2f88f87f3adc7b https://www.encodeproject.org/files/ENCFF850ACK/@@download/ENCFF850ACK.bigWig GRCh38 released ENCFF578ZHA bigWig fold change over control ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF939AYG 1302155508 ENCODE Processing Pipeline a7341f820564ce0cb1ac0d6864b8d2f4 https://www.encodeproject.org/files/ENCFF578ZHA/@@download/ENCFF578ZHA.bigWig GRCh38 released ENCFF428KHB bigBed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF931OLL 11115109 ENCODE Processing Pipeline 2088f32a369c0a4f0da880defa87df6e https://www.encodeproject.org/files/ENCFF428KHB/@@download/ENCFF428KHB.bigBed GRCh38 released ENCFF257YCO bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF426RDP, ENCFF996ASC 6357166 ENCODE Processing Pipeline 8834d418bc818303d607a485f5e0d236 https://www.encodeproject.org/files/ENCFF257YCO/@@download/ENCFF257YCO.bed.gz GRCh38 released ENCFF594TVV bigWig signal p-value ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF939AYG 986060091 ENCODE Processing Pipeline 2d3c80ebb03af117ce37c8c5d2fe43ea https://www.encodeproject.org/files/ENCFF594TVV/@@download/ENCFF594TVV.bigWig GRCh38 released ENCFF777DEN bigWig signal p-value ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF426RDP, ENCFF996ASC 947896361 ENCODE Processing Pipeline 7a0536770d42b474d1977fcc71fa3b36 https://www.encodeproject.org/files/ENCFF777DEN/@@download/ENCFF777DEN.bigWig GRCh38 released ENCFF459PKI bigWig fold change over control ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF426RDP, ENCFF996ASC 1153909536 ENCODE Processing Pipeline f70227d971db83d218a9e601493b9a13 https://www.encodeproject.org/files/ENCFF459PKI/@@download/ENCFF459PKI.bigWig GRCh38 released ENCFF931OLL bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF939AYG 6560088 ENCODE Processing Pipeline e449d1bfb334a99dff96b11d36208808 https://www.encodeproject.org/files/ENCFF931OLL/@@download/ENCFF931OLL.bed.gz GRCh38 released ENCFF245CGQ bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF939AYG, ENCFF996ASC 7194932 ENCODE Processing Pipeline fb7a9f38128d5c512065592a3889733e https://www.encodeproject.org/files/ENCFF245CGQ/@@download/ENCFF245CGQ.bed.gz GRCh38 released ENCFF896WDG bed narrowPeak conservative idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF245CGQ, ENCFF257YCO, ENCFF419RSJ, ENCFF931OLL 146892 ENCODE Processing Pipeline f0d494ef86ded30f30b1d07566aae141 https://www.encodeproject.org/files/ENCFF896WDG/@@download/ENCFF896WDG.bed.gz GRCh38 released ENCFF253GMY bigBed narrowPeak optimal idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF414LXZ 425211 ENCODE Processing Pipeline ac95f2c1525b97b778e7296971c01433 https://www.encodeproject.org/files/ENCFF253GMY/@@download/ENCFF253GMY.bigBed GRCh38 released ENCFF168GIC bigBed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF245CGQ 13303423 ENCODE Processing Pipeline d55ca2cac205ec9aa47b8ed4d7a3212c https://www.encodeproject.org/files/ENCFF168GIC/@@download/ENCFF168GIC.bigBed GRCh38 released ENCFF134YVM bigWig fold change over control ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF939AYG, ENCFF996ASC 2157585208 ENCODE Processing Pipeline 1a8d1aa4ce1f7627e65e0121e6db7ab0 https://www.encodeproject.org/files/ENCFF134YVM/@@download/ENCFF134YVM.bigWig GRCh38 released ENCFF578OWJ bigBed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF257YCO 11130619 ENCODE Processing Pipeline 19bdfaffa109669f487f6a523a34bd80 https://www.encodeproject.org/files/ENCFF578OWJ/@@download/ENCFF578OWJ.bigBed GRCh38 released ENCFF203JFC bigBed narrowPeak conservative idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF896WDG 345395 ENCODE Processing Pipeline 992868483ffe639da5cd9e20adceba62 https://www.encodeproject.org/files/ENCFF203JFC/@@download/ENCFF203JFC.bigBed GRCh38 released ENCFF414LXZ bed narrowPeak optimal idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF245CGQ, ENCFF257YCO, ENCFF419RSJ, ENCFF931OLL 198388 ENCODE Processing Pipeline 03103e7aa9c3f556cc4d7f515c775003 https://www.encodeproject.org/files/ENCFF414LXZ/@@download/ENCFF414LXZ.bed.gz GRCh38 released ENCFF573XIT bigWig fold change over control ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF838PTN 1284951937 ENCODE Processing Pipeline b8a69680081a555f44c7f05d34b56e50 https://www.encodeproject.org/files/ENCFF573XIT/@@download/ENCFF573XIT.bigWig hg19 released ENCFF057TLM bigBed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF660UZA 11091937 ENCODE Processing Pipeline c0fc9e1f26032c44021e7c06599c8056 https://www.encodeproject.org/files/ENCFF057TLM/@@download/ENCFF057TLM.bigBed hg19 released ENCFF660UZA bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF838PTN 6545698 ENCODE Processing Pipeline 02e0e43a446a210717d03c4ac97ceb9c https://www.encodeproject.org/files/ENCFF660UZA/@@download/ENCFF660UZA.bed.gz hg19 released ENCFF417EPB bed narrowPeak conservative idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF351UKV, ENCFF429CKD, ENCFF660UZA 138386 ENCODE Processing Pipeline 8c9dbf5d833d3c1ae1893625064c033d https://www.encodeproject.org/files/ENCFF417EPB/@@download/ENCFF417EPB.bed.gz hg19 released ENCFF530VVI bigBed narrowPeak conservative idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF417EPB 338908 ENCODE Processing Pipeline ef3388be9922d57dad9b390e27f29ba2 https://www.encodeproject.org/files/ENCFF530VVI/@@download/ENCFF530VVI.bigBed hg19 released ENCFF713UKK bigWig signal p-value ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF585TAQ 1068835592 ENCODE Processing Pipeline 435736155c1e58ed860adbc768622ef0 https://www.encodeproject.org/files/ENCFF713UKK/@@download/ENCFF713UKK.bigWig hg19 released ENCFF353CQJ bed narrowPeak optimal idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF351UKV, ENCFF429CKD, ENCFF660UZA 188092 ENCODE Processing Pipeline bcaa20932471393a0b44122cd0da6cec https://www.encodeproject.org/files/ENCFF353CQJ/@@download/ENCFF353CQJ.bed.gz hg19 released ENCFF461CGV bigBed narrowPeak optimal idr thresholded peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF353CQJ 415257 ENCODE Processing Pipeline 8884713f40984e23af5c3f7f62fd0f5f https://www.encodeproject.org/files/ENCFF461CGV/@@download/ENCFF461CGV.bigBed hg19 released ENCFF743LLB bigWig signal p-value ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF585TAQ, ENCFF838PTN 1765220358 ENCODE Processing Pipeline 8d06befc6a925a243709f20256458bca https://www.encodeproject.org/files/ENCFF743LLB/@@download/ENCFF743LLB.bigWig hg19 released ENCFF620ERQ bigWig fold change over control ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF585TAQ, ENCFF838PTN 2186295104 ENCODE Processing Pipeline 3a27cb5299b17e3045da517bcbc7e6f1 https://www.encodeproject.org/files/ENCFF620ERQ/@@download/ENCFF620ERQ.bigWig hg19 released ENCFF351UKV bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF585TAQ, ENCFF838PTN 7179720 ENCODE Processing Pipeline 3c0bf2a6bab503dc6cb150eded05ce3d https://www.encodeproject.org/files/ENCFF351UKV/@@download/ENCFF351UKV.bed.gz hg19 released ENCFF524HAK bigBed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF429CKD 11130890 ENCODE Processing Pipeline 227e68751acd5ffd9161f2b4bc80d327 https://www.encodeproject.org/files/ENCFF524HAK/@@download/ENCFF524HAK.bigBed hg19 released ENCFF176PSV bigWig fold change over control ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF585TAQ 1145104996 ENCODE Processing Pipeline 7d79fa6e48c2b20ebf2d51c627ab1240 https://www.encodeproject.org/files/ENCFF176PSV/@@download/ENCFF176PSV.bigWig hg19 released ENCFF802YPZ bigWig signal p-value ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF838PTN 1265840392 ENCODE Processing Pipeline b2ab192e58c15ba3b635d9d2ebbd0bea https://www.encodeproject.org/files/ENCFF802YPZ/@@download/ENCFF802YPZ.bigWig hg19 released ENCFF136UDM bigBed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF351UKV 13290376 ENCODE Processing Pipeline bf7dae6f954b70f20af2c71cb2294af2 https://www.encodeproject.org/files/ENCFF136UDM/@@download/ENCFF136UDM.bigBed hg19 released ENCFF429CKD bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF585TAQ 6329550 ENCODE Processing Pipeline e0bd65df878f8898b196f46c8081c083 https://www.encodeproject.org/files/ENCFF429CKD/@@download/ENCFF429CKD.bed.gz hg19 released ENCFF273BIC fastq reads ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1528723353 Bradley Bernstein, Broad d2cf21625bd7329534535cba31e91755 SRA:SRR5833286 https://www.encodeproject.org/files/ENCFF273BIC/@@download/ENCFF273BIC.fastq.gz Illumina HiSeq 2500 /files/ENCFF280YFB/, /files/ENCFF600AGN/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF109ECO fastq reads ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1806943991 Bradley Bernstein, Broad 8786e346467c7ab96ae6a1ce174414fa SRA:SRR5833287 https://www.encodeproject.org/files/ENCFF109ECO/@@download/ENCFF109ECO.fastq.gz Illumina HiSeq 2500 /files/ENCFF207NLW/, /files/ENCFF253BJA/, /files/ENCFF549ALF/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF900VKF bam unfiltered alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF109ECO, ENCFF643CGH 2157913093 ENCODE Processing Pipeline 798dabd2b95ebc2fc49240a8d37aaf9c https://www.encodeproject.org/files/ENCFF900VKF/@@download/ENCFF900VKF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF144YCB bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF273BIC, ENCFF643CGH 1460773164 ENCODE Processing Pipeline 1cc39d8fc2e9d1b77f7ff5818759485d https://www.encodeproject.org/files/ENCFF144YCB/@@download/ENCFF144YCB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF072MHQ bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF109ECO, ENCFF643CGH 1839479707 ENCODE Processing Pipeline f81fd7e712db9195bec93423c328dc74 https://www.encodeproject.org/files/ENCFF072MHQ/@@download/ENCFF072MHQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF190LOC bam unfiltered alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF273BIC, ENCFF807MUK 1773679884 ENCODE Processing Pipeline c2d8fd00637793710f3ac5e371baaa7c https://www.encodeproject.org/files/ENCFF190LOC/@@download/ENCFF190LOC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF019TVZ bam unfiltered alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF109ECO, ENCFF807MUK 2153976314 ENCODE Processing Pipeline 8db869bf0d0821d8e6567ffe241396cd https://www.encodeproject.org/files/ENCFF019TVZ/@@download/ENCFF019TVZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF919IIQ bam unfiltered alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF273BIC, ENCFF643CGH 1778223821 ENCODE Processing Pipeline f460109f6065b78f052f952e38fe84b3 https://www.encodeproject.org/files/ENCFF919IIQ/@@download/ENCFF919IIQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF579XSU bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF273BIC, ENCFF807MUK 1459864876 ENCODE Processing Pipeline cdb7a756c6e1e6095d4c052d5446382e https://www.encodeproject.org/files/ENCFF579XSU/@@download/ENCFF579XSU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF536BYQ bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF109ECO, ENCFF807MUK 1838537548 ENCODE Processing Pipeline 7bc844612166f7aa41776aabae5f06dd https://www.encodeproject.org/files/ENCFF536BYQ/@@download/ENCFF536BYQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF974RXC bigWig signal p-value ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF144YCB, ENCFF248XON, ENCFF882WXC 1404883641 ENCODE Processing Pipeline fd14c4e1e44f10cc5a7dde819ba92d40 https://www.encodeproject.org/files/ENCFF974RXC/@@download/ENCFF974RXC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF409AYC bigWig signal p-value ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF072MHQ, ENCFF144YCB, ENCFF248XON, ENCFF882WXC 1954065280 ENCODE Processing Pipeline fe294b156358b9532b9cdfb7615f9bdc https://www.encodeproject.org/files/ENCFF409AYC/@@download/ENCFF409AYC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF260WTU bigWig fold change over control ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF072MHQ, ENCFF248XON, ENCFF882WXC 1490754771 ENCODE Processing Pipeline 459896214d6a0cd5adb788c2f6764d89 https://www.encodeproject.org/files/ENCFF260WTU/@@download/ENCFF260WTU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF802OGB bigWig signal p-value ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF072MHQ, ENCFF248XON, ENCFF882WXC 1522363307 ENCODE Processing Pipeline 6cc61f3fcfae95532d52b259327e0e2b https://www.encodeproject.org/files/ENCFF802OGB/@@download/ENCFF802OGB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF635YAT bed narrowPeak conservative idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF269FGC, ENCFF419RSJ, ENCFF834CZH, ENCFF989LEJ 183018 ENCODE Processing Pipeline a1e87da20fe89a8443391c4635bbc215 https://www.encodeproject.org/files/ENCFF635YAT/@@download/ENCFF635YAT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF834CZH bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF072MHQ, ENCFF248XON, ENCFF882WXC 7211247 ENCODE Processing Pipeline d0e84208a6172f29056efb650527af2a https://www.encodeproject.org/files/ENCFF834CZH/@@download/ENCFF834CZH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF989LEJ bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF072MHQ, ENCFF144YCB, ENCFF248XON, ENCFF882WXC 7281071 ENCODE Processing Pipeline 3719c86ef70175a36ac8bd142eef4ae5 https://www.encodeproject.org/files/ENCFF989LEJ/@@download/ENCFF989LEJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF926WAF bigWig fold change over control ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF144YCB, ENCFF248XON, ENCFF882WXC 1400266518 ENCODE Processing Pipeline 066573f9127228aaf882a14c2395e468 https://www.encodeproject.org/files/ENCFF926WAF/@@download/ENCFF926WAF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF791MRE bigBed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF834CZH 12886921 ENCODE Processing Pipeline 00403c4a4ecdb15a16988d63e9393c3f https://www.encodeproject.org/files/ENCFF791MRE/@@download/ENCFF791MRE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF324UNA bed narrowPeak optimal idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF269FGC, ENCFF419RSJ, ENCFF834CZH, ENCFF989LEJ 216570 ENCODE Processing Pipeline cb1ad56a1183abf396d2778fb4c665e7 https://www.encodeproject.org/files/ENCFF324UNA/@@download/ENCFF324UNA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF269FGC bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF144YCB, ENCFF248XON, ENCFF882WXC 6858712 ENCODE Processing Pipeline 552ac8007bc7a0233654bb081bb3fd91 https://www.encodeproject.org/files/ENCFF269FGC/@@download/ENCFF269FGC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF709XCX bigBed narrowPeak conservative idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF635YAT 501921 ENCODE Processing Pipeline 3a2825a427ba60576cc318949e1c846c https://www.encodeproject.org/files/ENCFF709XCX/@@download/ENCFF709XCX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF522SLB bigWig fold change over control ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF072MHQ, ENCFF144YCB, ENCFF248XON, ENCFF882WXC 1927501901 ENCODE Processing Pipeline fe0a76b3edde2890ac5722cd3588c81a https://www.encodeproject.org/files/ENCFF522SLB/@@download/ENCFF522SLB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF123EDY bigBed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF269FGC 13267882 ENCODE Processing Pipeline 8d6dd6e945c55b288b2a6bfb9ff14de7 https://www.encodeproject.org/files/ENCFF123EDY/@@download/ENCFF123EDY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF812NCB bigBed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF989LEJ 12880882 ENCODE Processing Pipeline fd209ae023e6f4a7779e1596e8533b9c https://www.encodeproject.org/files/ENCFF812NCB/@@download/ENCFF812NCB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF176ZNI bigBed narrowPeak optimal idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF324UNA 587531 ENCODE Processing Pipeline b84cbf18ed4a6459eca4fa24832e9758 https://www.encodeproject.org/files/ENCFF176ZNI/@@download/ENCFF176ZNI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF055YYC bigWig signal p-value ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 1424867645 ENCODE Processing Pipeline 52fa5437658080a97497e87f078bb272 https://www.encodeproject.org/files/ENCFF055YYC/@@download/ENCFF055YYC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF922PNM bigWig signal p-value ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF536BYQ, ENCFF812MYK, ENCFF831TJC 1571876247 ENCODE Processing Pipeline 7d0c2c8fc592667498c1c082fce96950 https://www.encodeproject.org/files/ENCFF922PNM/@@download/ENCFF922PNM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF570RXT bigWig signal p-value ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF536BYQ, ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 1990600801 ENCODE Processing Pipeline 11afc1e60d9f6c24475ec4c2746500d5 https://www.encodeproject.org/files/ENCFF570RXT/@@download/ENCFF570RXT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF690AZB bigWig fold change over control ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 1406763904 ENCODE Processing Pipeline 957e91a8e745f0eafe747048528ddb1c https://www.encodeproject.org/files/ENCFF690AZB/@@download/ENCFF690AZB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF333NQW bigWig fold change over control ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF536BYQ, ENCFF812MYK, ENCFF831TJC 1534321765 ENCODE Processing Pipeline 77a3933a31210961752fe70656507171 https://www.encodeproject.org/files/ENCFF333NQW/@@download/ENCFF333NQW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF087KIQ bigWig fold change over control ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF536BYQ, ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 1929266740 ENCODE Processing Pipeline 3bf250a7988858e0afb37842af4300d9 https://www.encodeproject.org/files/ENCFF087KIQ/@@download/ENCFF087KIQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF482XGS bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 6898050 ENCODE Processing Pipeline d2cec1c222fd66ebdf12467db2696c8c https://www.encodeproject.org/files/ENCFF482XGS/@@download/ENCFF482XGS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF258KEL bigBed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF482XGS 13251131 ENCODE Processing Pipeline 2cd35759432de236ad71909186ffd4df https://www.encodeproject.org/files/ENCFF258KEL/@@download/ENCFF258KEL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF161UWV bigBed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF557NXL 12907758 ENCODE Processing Pipeline 7e0603d83889783bc6d180a80f62010e https://www.encodeproject.org/files/ENCFF161UWV/@@download/ENCFF161UWV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF367LDH bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF536BYQ, ENCFF812MYK, ENCFF831TJC 7180979 ENCODE Processing Pipeline 16b6624c22589f5ed5dca36bf77359dc https://www.encodeproject.org/files/ENCFF367LDH/@@download/ENCFF367LDH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF557NXL bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF536BYQ, ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 7273594 ENCODE Processing Pipeline 13ca9d80623c119bd040fb7a40f5f469 https://www.encodeproject.org/files/ENCFF557NXL/@@download/ENCFF557NXL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF888OVS bigBed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF367LDH 12968207 ENCODE Processing Pipeline 958232c21be86c044d4015f593334af3 https://www.encodeproject.org/files/ENCFF888OVS/@@download/ENCFF888OVS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF651BRJ bed narrowPeak conservative idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF367LDH, ENCFF482XGS, ENCFF557NXL 183333 ENCODE Processing Pipeline f69733a8203a223add58b38b94d64686 https://www.encodeproject.org/files/ENCFF651BRJ/@@download/ENCFF651BRJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF029PII bigBed narrowPeak optimal idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF743FZS 577478 ENCODE Processing Pipeline cb5dd1a081256ea4b48ad5b6844c9f4c https://www.encodeproject.org/files/ENCFF029PII/@@download/ENCFF029PII.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF743FZS bed narrowPeak optimal idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF367LDH, ENCFF482XGS, ENCFF557NXL 211111 ENCODE Processing Pipeline 08a0432a038c13d0b4ea21714a84fb36 https://www.encodeproject.org/files/ENCFF743FZS/@@download/ENCFF743FZS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF189WQR bigBed narrowPeak conservative idr thresholded peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF651BRJ 504646 ENCODE Processing Pipeline 25c8ef09e5fd49350e56fcaf245878af https://www.encodeproject.org/files/ENCFF189WQR/@@download/ENCFF189WQR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF144SDE fastq reads ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 1 40 single-ended 533526596 Xiang-Dong Fu, UCSD a05c577b9ab423720cd71054e38791a0 SRA:SRR6213997 https://www.encodeproject.org/files/ENCFF144SDE/@@download/ENCFF144SDE.fastq.gz Illumina HiSeq 2000 /files/ENCFF319AWI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF712IBC fastq reads ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 1 40 single-ended 573893893 Xiang-Dong Fu, UCSD 55cf0d3a044d0de7b0cad7b39932ece3 SRA:SRR6213996 https://www.encodeproject.org/files/ENCFF712IBC/@@download/ENCFF712IBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF386QNN/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF891OJS bam unfiltered alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF643CGH, ENCFF712IBC 723554119 ENCODE Processing Pipeline 61bf635e4724961be08c9297ff4d997a https://www.encodeproject.org/files/ENCFF891OJS/@@download/ENCFF891OJS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF360JLK bam unfiltered alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF144SDE, ENCFF643CGH 681368093 ENCODE Processing Pipeline b23bdaf20795934ef70822936140062e https://www.encodeproject.org/files/ENCFF360JLK/@@download/ENCFF360JLK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF056SXW bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF144SDE, ENCFF643CGH 400578458 ENCODE Processing Pipeline db4e53110540e043544748857db0c9f3 https://www.encodeproject.org/files/ENCFF056SXW/@@download/ENCFF056SXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF687MHD bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF643CGH, ENCFF712IBC 414917451 ENCODE Processing Pipeline 79a301255f184ac029b11b3e143fe175 https://www.encodeproject.org/files/ENCFF687MHD/@@download/ENCFF687MHD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF601VSO bigWig signal p-value ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF056SXW, ENCFF107PCV, ENCFF619YOF 753833940 ENCODE Processing Pipeline 10f50e4f0fb6b56457b98f268b3d521f https://www.encodeproject.org/files/ENCFF601VSO/@@download/ENCFF601VSO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF794DIO bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF107PCV, ENCFF619YOF, ENCFF687MHD 5899040 ENCODE Processing Pipeline 49bfdbfd03b8f77991fed85edd93bf41 https://www.encodeproject.org/files/ENCFF794DIO/@@download/ENCFF794DIO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF106QSR bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF056SXW, ENCFF107PCV, ENCFF619YOF, ENCFF687MHD 6610982 ENCODE Processing Pipeline 41309dae8bc2b70a5b4fb03e9bb4ebaa https://www.encodeproject.org/files/ENCFF106QSR/@@download/ENCFF106QSR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF012XLX bigBed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF461NYX 13243469 ENCODE Processing Pipeline 2856fda13f736ee8addd9b09085bed4b https://www.encodeproject.org/files/ENCFF012XLX/@@download/ENCFF012XLX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF945IQD bigWig signal p-value ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF107PCV, ENCFF619YOF, ENCFF687MHD 717102909 ENCODE Processing Pipeline 3aaf003da2bd11cef04d18d8d37c6394 https://www.encodeproject.org/files/ENCFF945IQD/@@download/ENCFF945IQD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF358JCZ bigWig fold change over control ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF107PCV, ENCFF619YOF, ENCFF687MHD 437430799 ENCODE Processing Pipeline 32639b069bb15936a49a428a610eca69 https://www.encodeproject.org/files/ENCFF358JCZ/@@download/ENCFF358JCZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF236VKH bigWig fold change over control ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF056SXW, ENCFF107PCV, ENCFF619YOF, ENCFF687MHD 695034976 ENCODE Processing Pipeline b9a3dd121fadd582b4f111f306f3f09f https://www.encodeproject.org/files/ENCFF236VKH/@@download/ENCFF236VKH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF461NYX bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF056SXW, ENCFF107PCV, ENCFF619YOF 5730789 ENCODE Processing Pipeline 893a9174096ff5e25020327f54068ebb https://www.encodeproject.org/files/ENCFF461NYX/@@download/ENCFF461NYX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF725EKU bigBed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF794DIO 13275682 ENCODE Processing Pipeline fa564ff12118d3abdbf28599037ce39e https://www.encodeproject.org/files/ENCFF725EKU/@@download/ENCFF725EKU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF015NAT bigBed narrowPeak conservative idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF205NPO 771460 ENCODE Processing Pipeline 9f1faf85605ab6eb7cb58ad96f879549 https://www.encodeproject.org/files/ENCFF015NAT/@@download/ENCFF015NAT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF869DNX bigWig signal p-value ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF056SXW, ENCFF107PCV, ENCFF619YOF, ENCFF687MHD 802524511 ENCODE Processing Pipeline e475e01bbf591fd19fb8aaa28cc249b9 https://www.encodeproject.org/files/ENCFF869DNX/@@download/ENCFF869DNX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF865GOH bigWig fold change over control ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF056SXW, ENCFF107PCV, ENCFF619YOF 418893907 ENCODE Processing Pipeline 535f12e99c21ab3991ce13af90032630 https://www.encodeproject.org/files/ENCFF865GOH/@@download/ENCFF865GOH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF962LAL bigBed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF106QSR 13452748 ENCODE Processing Pipeline 2f0943c3ff3db83b10e850bc8b81d649 https://www.encodeproject.org/files/ENCFF962LAL/@@download/ENCFF962LAL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF205NPO bed narrowPeak conservative idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF106QSR, ENCFF419RSJ, ENCFF461NYX, ENCFF794DIO 352458 ENCODE Processing Pipeline 83fccdbac1aa1f829ef8eaf0346fb937 https://www.encodeproject.org/files/ENCFF205NPO/@@download/ENCFF205NPO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF420QKI bed narrowPeak optimal idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF106QSR, ENCFF419RSJ, ENCFF461NYX, ENCFF794DIO 359155 ENCODE Processing Pipeline c9ecc4e66f55e1d9799e7bc97610c12c https://www.encodeproject.org/files/ENCFF420QKI/@@download/ENCFF420QKI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF313ACY bigBed narrowPeak optimal idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF420QKI 781299 ENCODE Processing Pipeline e80bfd50ecbd35aa87269998da25971d https://www.encodeproject.org/files/ENCFF313ACY/@@download/ENCFF313ACY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF701CVL bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF712IBC, ENCFF807MUK 415487840 ENCODE Processing Pipeline ef1edb72352e4a3321057c19a005af27 https://www.encodeproject.org/files/ENCFF701CVL/@@download/ENCFF701CVL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF965DZD bam unfiltered alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF712IBC, ENCFF807MUK 721034380 ENCODE Processing Pipeline 0872794fadaa49aa201fee143eefe78d https://www.encodeproject.org/files/ENCFF965DZD/@@download/ENCFF965DZD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF528TGA bam unfiltered alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF144SDE, ENCFF807MUK 678830014 ENCODE Processing Pipeline 430050731cbf39e19d925044364cf4ef https://www.encodeproject.org/files/ENCFF528TGA/@@download/ENCFF528TGA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF596ZQI bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF144SDE, ENCFF807MUK 401089054 ENCODE Processing Pipeline bdc570e058764bca0b77d0b0c8670164 https://www.encodeproject.org/files/ENCFF596ZQI/@@download/ENCFF596ZQI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF083HJH bigWig signal p-value ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF217UCE, ENCFF701CVL, ENCFF825CNQ 703091179 ENCODE Processing Pipeline 57617b7ccb14151773f3b233410e7eea https://www.encodeproject.org/files/ENCFF083HJH/@@download/ENCFF083HJH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF673WFU bigWig fold change over control ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF217UCE, ENCFF701CVL, ENCFF825CNQ 437133041 ENCODE Processing Pipeline 5f917f5c01eea9718d588d2b31f17023 https://www.encodeproject.org/files/ENCFF673WFU/@@download/ENCFF673WFU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF974PHL bigWig signal p-value ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF217UCE, ENCFF596ZQI, ENCFF825CNQ 692342590 ENCODE Processing Pipeline 3919decbc0ffd80231269b63d916867b https://www.encodeproject.org/files/ENCFF974PHL/@@download/ENCFF974PHL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF303TZL bigWig signal p-value ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF217UCE, ENCFF596ZQI, ENCFF701CVL, ENCFF825CNQ 828397191 ENCODE Processing Pipeline 91626b6139fde51f413c675ade83996e https://www.encodeproject.org/files/ENCFF303TZL/@@download/ENCFF303TZL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF464FBN bigWig fold change over control ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF217UCE, ENCFF596ZQI, ENCFF825CNQ 425343006 ENCODE Processing Pipeline 77f037b03f118335bbdd51d49f12a49f https://www.encodeproject.org/files/ENCFF464FBN/@@download/ENCFF464FBN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF910MFU bigWig fold change over control ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF217UCE, ENCFF596ZQI, ENCFF701CVL, ENCFF825CNQ 694421588 ENCODE Processing Pipeline 00a07c8822ea670d77df2f8fb4735955 https://www.encodeproject.org/files/ENCFF910MFU/@@download/ENCFF910MFU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF572LJS bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF217UCE, ENCFF701CVL, ENCFF825CNQ 5922579 ENCODE Processing Pipeline 1454a7a287c40636c34edc8d71f040e4 https://www.encodeproject.org/files/ENCFF572LJS/@@download/ENCFF572LJS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF170DYF bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF217UCE, ENCFF596ZQI, ENCFF825CNQ 5840669 ENCODE Processing Pipeline fc3e3f597db96ebbb7d48ac3f240beb7 https://www.encodeproject.org/files/ENCFF170DYF/@@download/ENCFF170DYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF246YPT bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF217UCE, ENCFF596ZQI, ENCFF701CVL, ENCFF825CNQ 6612376 ENCODE Processing Pipeline 6a558c205a1aa8c58b32d59dbc1c9788 https://www.encodeproject.org/files/ENCFF246YPT/@@download/ENCFF246YPT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF051JXD bigBed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF572LJS 13293905 ENCODE Processing Pipeline 72a2c7bc0111717b0812423c025dd879 https://www.encodeproject.org/files/ENCFF051JXD/@@download/ENCFF051JXD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF344DWM bigBed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF170DYF 13361068 ENCODE Processing Pipeline be35ebaed6d377578646bd877731430a https://www.encodeproject.org/files/ENCFF344DWM/@@download/ENCFF344DWM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF662UVX bigBed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF246YPT 13447153 ENCODE Processing Pipeline 24105d63154653b6d633db6752c00f70 https://www.encodeproject.org/files/ENCFF662UVX/@@download/ENCFF662UVX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF517JWG bed narrowPeak conservative idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF170DYF, ENCFF246YPT, ENCFF572LJS 351437 ENCODE Processing Pipeline f1b8b3de509147a2c632a564f8b3e541 https://www.encodeproject.org/files/ENCFF517JWG/@@download/ENCFF517JWG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF908CUY bigBed narrowPeak conservative idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF517JWG 768898 ENCODE Processing Pipeline ab4b1f7f4d15f30bf46b8256c1a44158 https://www.encodeproject.org/files/ENCFF908CUY/@@download/ENCFF908CUY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF199GND bed narrowPeak optimal idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF170DYF, ENCFF246YPT, ENCFF572LJS 362880 ENCODE Processing Pipeline ad6ac579bcd3ac2285eef43ba5157ecc https://www.encodeproject.org/files/ENCFF199GND/@@download/ENCFF199GND.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF925OAE bigBed narrowPeak optimal idr thresholded peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF199GND 785171 ENCODE Processing Pipeline 02c61804c16ff02b42e36761c25e3cbc https://www.encodeproject.org/files/ENCFF925OAE/@@download/ENCFF925OAE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF824AUB bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF807MUK 5242603979 ENCODE Processing Pipeline bd56307da0e853ad225a13cc8434f092 https://www.encodeproject.org/files/ENCFF824AUB/@@download/ENCFF824AUB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF066CFC bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF807MUK 5135076913 ENCODE Processing Pipeline 74f15fa36f0ae9853afaa66a0fcb47fc https://www.encodeproject.org/files/ENCFF066CFC/@@download/ENCFF066CFC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF739DKT bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 1818368754 ENCODE Processing Pipeline 6c17e78a7988e05cfd132cc0dc8c4041 https://www.encodeproject.org/files/ENCFF739DKT/@@download/ENCFF739DKT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF002EKZ fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002ELA 2358283980 Michael Snyder, Stanford 7de0fb8bd07777962a07c5efe4c60928 SRA:SRR5111435 https://www.encodeproject.org/files/ENCFF002EKZ/@@download/ENCFF002EKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF002ELA fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKZ 2315929041 Michael Snyder, Stanford 7cf1b8150ad689ba3a3b7650042660ed SRA:SRR5111435 https://www.encodeproject.org/files/ENCFF002ELA/@@download/ENCFF002ELA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF002ELB fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002ELE 2315195584 Michael Snyder, Stanford 93ed3156cdd2a7392a7e745ff99e36a1 SRA:SRR5111434 https://www.encodeproject.org/files/ENCFF002ELB/@@download/ENCFF002ELB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF002ELE fastq reads ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002ELB 2355484908 Michael Snyder, Stanford 8b7cb4bfb92d5721d123d9b2ed6e9dd5 SRA:SRR5111434 https://www.encodeproject.org/files/ENCFF002ELE/@@download/ENCFF002ELE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF281ULQ bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 2156406061 ENCODE Processing Pipeline b09c271b6b03ec15d47227bb153aee5a https://www.encodeproject.org/files/ENCFF281ULQ/@@download/ENCFF281ULQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF921NFP bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 6110753 ENCODE Processing Pipeline e52657fac40c5ac9a2b369de1e79ef29 https://www.encodeproject.org/files/ENCFF921NFP/@@download/ENCFF921NFP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF073OWF bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 7074765 ENCODE Processing Pipeline 02da8a7595ac4a13da6f3019e806279e https://www.encodeproject.org/files/ENCFF073OWF/@@download/ENCFF073OWF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF709QKK bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6002614 ENCODE Processing Pipeline 6dae0589750cc96542c538f115984196 https://www.encodeproject.org/files/ENCFF709QKK/@@download/ENCFF709QKK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF562EWO bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF709QKK 11355917 ENCODE Processing Pipeline b9218dc89706b5bde374cfb7003dd173 https://www.encodeproject.org/files/ENCFF562EWO/@@download/ENCFF562EWO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF833QVH bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF921NFP 11353463 ENCODE Processing Pipeline efd7a2e66ab95a355ae1bacb0e62712c https://www.encodeproject.org/files/ENCFF833QVH/@@download/ENCFF833QVH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF829YVT bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF073OWF 13394967 ENCODE Processing Pipeline ee79388fec4bf10235981ef87eba5105 https://www.encodeproject.org/files/ENCFF829YVT/@@download/ENCFF829YVT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF568FPC bed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF073OWF, ENCFF709QKK, ENCFF921NFP 92489 ENCODE Processing Pipeline af27fd62812a77a539dc18643134241a https://www.encodeproject.org/files/ENCFF568FPC/@@download/ENCFF568FPC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF148PJT bigBed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF568FPC 225341 ENCODE Processing Pipeline bae0a282c07455652c31378880410ceb https://www.encodeproject.org/files/ENCFF148PJT/@@download/ENCFF148PJT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF817QHW bed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF073OWF, ENCFF709QKK, ENCFF921NFP 189647 ENCODE Processing Pipeline e19074d05cfeb97f1ebf25e868bd35da https://www.encodeproject.org/files/ENCFF817QHW/@@download/ENCFF817QHW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF476VJI bigBed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817QHW 370394 ENCODE Processing Pipeline c93e96967145bb25467b2664f4235e8f https://www.encodeproject.org/files/ENCFF476VJI/@@download/ENCFF476VJI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF785URO bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF807MUK 4204192281 ENCODE Processing Pipeline 9ccdd635480c87e71f7cd989de6810ac https://www.encodeproject.org/files/ENCFF785URO/@@download/ENCFF785URO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF895RMY bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF807MUK 4554666184 ENCODE Processing Pipeline 6088d4b6294c35f65d089f36d93e3ea0 https://www.encodeproject.org/files/ENCFF895RMY/@@download/ENCFF895RMY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF846UHE bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 1062646974 ENCODE Processing Pipeline ad166d6f3ddec9d5834d696278326d5a https://www.encodeproject.org/files/ENCFF846UHE/@@download/ENCFF846UHE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF616ANV bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 1142075469 ENCODE Processing Pipeline 10804b2c95ad1d1c34cefc23792b1cff https://www.encodeproject.org/files/ENCFF616ANV/@@download/ENCFF616ANV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF867IGT bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 1240620445 ENCODE Processing Pipeline 4d1bf12ed98658ae8e3081c7ff36c636 https://www.encodeproject.org/files/ENCFF867IGT/@@download/ENCFF867IGT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF183VHL bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 1830737338 ENCODE Processing Pipeline 0d5ac88f90abab8d233144d901e147e2 https://www.encodeproject.org/files/ENCFF183VHL/@@download/ENCFF183VHL.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF023LXY bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 1133460298 ENCODE Processing Pipeline dde20d8ba57000ec1d96fb629c2f6b51 https://www.encodeproject.org/files/ENCFF023LXY/@@download/ENCFF023LXY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF728RVS bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6168711 ENCODE Processing Pipeline 535c735b1671fa12d4df693df1e88cf9 https://www.encodeproject.org/files/ENCFF728RVS/@@download/ENCFF728RVS.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF991LAG bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF728RVS 11369735 ENCODE Processing Pipeline 8ed8e48828ad58a4e4d54fc6ed6eac7c https://www.encodeproject.org/files/ENCFF991LAG/@@download/ENCFF991LAG.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF019TKV bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 6288601 ENCODE Processing Pipeline 0c771f82287777948022b7b5d6501df8 https://www.encodeproject.org/files/ENCFF019TKV/@@download/ENCFF019TKV.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF288OHY bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF019TKV 11362418 ENCODE Processing Pipeline dd5057dc82b0cc0c65148edc9f5588be https://www.encodeproject.org/files/ENCFF288OHY/@@download/ENCFF288OHY.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF498FZI bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 2172016283 ENCODE Processing Pipeline d2bbb1ce010d3fd00e729fbe6b6342e5 https://www.encodeproject.org/files/ENCFF498FZI/@@download/ENCFF498FZI.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF294YGK bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF785URO, ENCFF895RMY, ENCFF941TZZ 7128719 ENCODE Processing Pipeline 25fbd37316d6c5541607d985b6f114c0 https://www.encodeproject.org/files/ENCFF294YGK/@@download/ENCFF294YGK.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF111ELG bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF294YGK 13395963 ENCODE Processing Pipeline cfc3830711b7f850515193a34b677430 https://www.encodeproject.org/files/ENCFF111ELG/@@download/ENCFF111ELG.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF166UJI bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF643CGH 5141963893 ENCODE Processing Pipeline b485e8c52e74953ebf342f977a13e019 https://www.encodeproject.org/files/ENCFF166UJI/@@download/ENCFF166UJI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF432SGY bam unfiltered alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF643CGH 5241503065 ENCODE Processing Pipeline 95b8649e88d2a1da56b84423dd139923 https://www.encodeproject.org/files/ENCFF432SGY/@@download/ENCFF432SGY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF494QGK bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF643CGH 4211711908 ENCODE Processing Pipeline 741a07a60462f0852e78ef1e4ab57f68 https://www.encodeproject.org/files/ENCFF494QGK/@@download/ENCFF494QGK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF735CSF bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF643CGH 4605570442 ENCODE Processing Pipeline 27155ec9cf385540915998b934513617 https://www.encodeproject.org/files/ENCFF735CSF/@@download/ENCFF735CSF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF677QYN bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF735CSF, ENCFF879YMO 1348074246 ENCODE Processing Pipeline 45ee58d7440df949e94209b0b689567d https://www.encodeproject.org/files/ENCFF677QYN/@@download/ENCFF677QYN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF018HCY bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF494QGK, ENCFF574BGV 962519363 ENCODE Processing Pipeline 158a1b6a8b3768192860604bd2b340bb https://www.encodeproject.org/files/ENCFF018HCY/@@download/ENCFF018HCY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF633OUL bigWig signal p-value ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF494QGK, ENCFF574BGV, ENCFF735CSF, ENCFF879YMO 1711274535 ENCODE Processing Pipeline d95fae7415b941a2c6c203b3cd9580d4 https://www.encodeproject.org/files/ENCFF633OUL/@@download/ENCFF633OUL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF891PHU bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF494QGK, ENCFF574BGV 1121688750 ENCODE Processing Pipeline 578401ebed9a7973b3267ac9c75c44f1 https://www.encodeproject.org/files/ENCFF891PHU/@@download/ENCFF891PHU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF212BNK bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF735CSF, ENCFF879YMO 1238605621 ENCODE Processing Pipeline 2b035aa34102a545e59f63a2e83bce02 https://www.encodeproject.org/files/ENCFF212BNK/@@download/ENCFF212BNK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF085KGM bigWig fold change over control ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF494QGK, ENCFF574BGV, ENCFF735CSF, ENCFF879YMO 2151869499 ENCODE Processing Pipeline 21b843b4966e50bbd86757512de6e485 https://www.encodeproject.org/files/ENCFF085KGM/@@download/ENCFF085KGM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF216XII bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF074VVE 11295145 ENCODE Processing Pipeline dca97e7545775c02e4d82f483f89ddbe https://www.encodeproject.org/files/ENCFF216XII/@@download/ENCFF216XII.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF375ZRO bigBed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF176ESH 221958 ENCODE Processing Pipeline c10db63b47a9ff7b6b84e86245a2a45f https://www.encodeproject.org/files/ENCFF375ZRO/@@download/ENCFF375ZRO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF400JCO bigBed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF323QQU 345295 ENCODE Processing Pipeline a1a97810c228e747b8d422a97068e014 https://www.encodeproject.org/files/ENCFF400JCO/@@download/ENCFF400JCO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF074VVE bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF735CSF, ENCFF879YMO 6116891 ENCODE Processing Pipeline 3c6f37a6190130dce01a211b11323183 https://www.encodeproject.org/files/ENCFF074VVE/@@download/ENCFF074VVE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF906TDK bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF916EPS 11387341 ENCODE Processing Pipeline c76efcab499ef652d412e533b6bdcc66 https://www.encodeproject.org/files/ENCFF906TDK/@@download/ENCFF906TDK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF916EPS bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF494QGK, ENCFF574BGV 6020623 ENCODE Processing Pipeline e452a7f68ad935c633224523291beef0 https://www.encodeproject.org/files/ENCFF916EPS/@@download/ENCFF916EPS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF105HRK bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF494QGK, ENCFF574BGV, ENCFF735CSF, ENCFF879YMO 7055709 ENCODE Processing Pipeline efe5416ce5a6f02af5f4bf003e82c3de https://www.encodeproject.org/files/ENCFF105HRK/@@download/ENCFF105HRK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF176ESH bed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF074VVE, ENCFF105HRK, ENCFF419RSJ, ENCFF916EPS 88827 ENCODE Processing Pipeline 837bcbcab567f455b07d2dd9d3450f95 https://www.encodeproject.org/files/ENCFF176ESH/@@download/ENCFF176ESH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF323QQU bed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF074VVE, ENCFF105HRK, ENCFF419RSJ, ENCFF916EPS 171350 ENCODE Processing Pipeline 06065784fbad520454b98df0921fae5b https://www.encodeproject.org/files/ENCFF323QQU/@@download/ENCFF323QQU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF476NLU bigBed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF105HRK 13380318 ENCODE Processing Pipeline c75be6d24ca3f317ea5b1721cb22c84b https://www.encodeproject.org/files/ENCFF476NLU/@@download/ENCFF476NLU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF680DVR bed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF019TKV, ENCFF294YGK, ENCFF728RVS 74771 ENCODE Processing Pipeline 4e3a57aac6eea715e3793c4cdd90f078 https://www.encodeproject.org/files/ENCFF680DVR/@@download/ENCFF680DVR.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF249OMS bigBed narrowPeak conservative idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF680DVR 166955 ENCODE Processing Pipeline df75f500484696413d71d6f439c2d5cf https://www.encodeproject.org/files/ENCFF249OMS/@@download/ENCFF249OMS.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF557HJB bed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF019TKV, ENCFF294YGK, ENCFF728RVS 157764 ENCODE Processing Pipeline c32f3b3d81c77f87265210662d341469 https://www.encodeproject.org/files/ENCFF557HJB/@@download/ENCFF557HJB.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF373RQB bigBed narrowPeak optimal idr thresholded peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF557HJB 327452 ENCODE Processing Pipeline cb1da4576489f1e3790070e948d8cad6 https://www.encodeproject.org/files/ENCFF373RQB/@@download/ENCFF373RQB.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF840CUL fastq reads ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF321HWW 3094686494 Michael Snyder, Stanford 1636a529ebef6c6508da705ff3b9d470 SRA:SRR5112105 https://www.encodeproject.org/files/ENCFF840CUL/@@download/ENCFF840CUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF645LBS fastq reads ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF269DXT 2875466492 Michael Snyder, Stanford 51710a7b6fd6fba67e9ddd53f3501fe5 SRA:SRR5112106 https://www.encodeproject.org/files/ENCFF645LBS/@@download/ENCFF645LBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF269DXT fastq reads ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF645LBS 2943736322 Michael Snyder, Stanford ee637dd2e46e8fdd88456c50c78ecbab SRA:SRR5112106 https://www.encodeproject.org/files/ENCFF269DXT/@@download/ENCFF269DXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF321HWW fastq reads ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF840CUL 3167266223 Michael Snyder, Stanford cb0f5dfb63d53a41dfc77f21f013614d SRA:SRR5112105 https://www.encodeproject.org/files/ENCFF321HWW/@@download/ENCFF321HWW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF698YHY bam unfiltered alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF269DXT, ENCFF645LBS, ENCFF807MUK 6242303290 ENCODE Processing Pipeline 237845bf23fae067712c81e9ddb88b19 https://www.encodeproject.org/files/ENCFF698YHY/@@download/ENCFF698YHY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF130CXV bam unfiltered alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF321HWW, ENCFF807MUK, ENCFF840CUL 6691952427 ENCODE Processing Pipeline 4dfa35047d8f0f52dc86bbd0206725a3 https://www.encodeproject.org/files/ENCFF130CXV/@@download/ENCFF130CXV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF604QHT bam unfiltered alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF269DXT, ENCFF643CGH, ENCFF645LBS 6248651989 ENCODE Processing Pipeline f1397665ea4e9305c34dac1ee06f8204 https://www.encodeproject.org/files/ENCFF604QHT/@@download/ENCFF604QHT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF833UAX bam unfiltered alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF321HWW, ENCFF643CGH, ENCFF840CUL 6699006397 ENCODE Processing Pipeline 2d5b35d5dd0d63f047b82d4328aae530 https://www.encodeproject.org/files/ENCFF833UAX/@@download/ENCFF833UAX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF083HMM bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF269DXT, ENCFF645LBS, ENCFF807MUK 5482119329 ENCODE Processing Pipeline dd98490c7ed8f3e1a5c4cd529a75bae6 https://www.encodeproject.org/files/ENCFF083HMM/@@download/ENCFF083HMM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF360KGZ bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF321HWW, ENCFF807MUK, ENCFF840CUL 5844855603 ENCODE Processing Pipeline 3b646eb5fa4858e870d79d56c42e37fc https://www.encodeproject.org/files/ENCFF360KGZ/@@download/ENCFF360KGZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF067KIS bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF269DXT, ENCFF643CGH, ENCFF645LBS 5485801631 ENCODE Processing Pipeline 1d3814e776fdaee8b1cdaa9ed8de3203 https://www.encodeproject.org/files/ENCFF067KIS/@@download/ENCFF067KIS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF615BCC bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF321HWW, ENCFF643CGH, ENCFF840CUL 5849533182 ENCODE Processing Pipeline c2f735fac7b00b6fe3edd206486c1c34 https://www.encodeproject.org/files/ENCFF615BCC/@@download/ENCFF615BCC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF036FMK bigWig signal p-value ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF360KGZ 1375633012 ENCODE Processing Pipeline 30d410b72f013494d69d1ee862be0514 https://www.encodeproject.org/files/ENCFF036FMK/@@download/ENCFF036FMK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF993XCR bigWig signal p-value ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF083HMM 1543402882 ENCODE Processing Pipeline c57523c0dcaa4b5ef27b0aa28aff66ef https://www.encodeproject.org/files/ENCFF993XCR/@@download/ENCFF993XCR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF303NIB bigWig signal p-value ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF083HMM, ENCFF360KGZ 1909637944 ENCODE Processing Pipeline f7e386af49676076d239d55ea32d5f71 https://www.encodeproject.org/files/ENCFF303NIB/@@download/ENCFF303NIB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF304CIT bigWig fold change over control ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF360KGZ 1508184584 ENCODE Processing Pipeline 4d58f3677ddec4cd67564a6aef8894b8 https://www.encodeproject.org/files/ENCFF304CIT/@@download/ENCFF304CIT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF650ENU bigWig fold change over control ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF083HMM 1491378470 ENCODE Processing Pipeline 01faf5ab0c2b0f1b2038c4ac711bec81 https://www.encodeproject.org/files/ENCFF650ENU/@@download/ENCFF650ENU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF643IAQ bigWig fold change over control ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF083HMM, ENCFF360KGZ 2088865184 ENCODE Processing Pipeline ad3df74ce5af0560c0887e659ab0a663 https://www.encodeproject.org/files/ENCFF643IAQ/@@download/ENCFF643IAQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF105DON bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF360KGZ 7004943 ENCODE Processing Pipeline eb32a1d88a471c1e3a5d6dc7c90801f9 https://www.encodeproject.org/files/ENCFF105DON/@@download/ENCFF105DON.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF720ELQ bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF083HMM 7006833 ENCODE Processing Pipeline bf0f7fa24e60327e78c6986fbc3c5c14 https://www.encodeproject.org/files/ENCFF720ELQ/@@download/ENCFF720ELQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF049NKP bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF083HMM, ENCFF360KGZ 7230266 ENCODE Processing Pipeline 4b1f6418eebd59e840827261635add2e https://www.encodeproject.org/files/ENCFF049NKP/@@download/ENCFF049NKP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF035OYH bigBed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF105DON 13521554 ENCODE Processing Pipeline 8ae13bea13fa3b4d6275f16fb4aa8ed2 https://www.encodeproject.org/files/ENCFF035OYH/@@download/ENCFF035OYH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF430FDQ bigBed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF720ELQ 13410435 ENCODE Processing Pipeline 7bcd2e04878799b36cc9b3be6f4b86f6 https://www.encodeproject.org/files/ENCFF430FDQ/@@download/ENCFF430FDQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF879RNW bigBed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF049NKP 13340325 ENCODE Processing Pipeline 48b03a37c2d2f115f159def0194eee10 https://www.encodeproject.org/files/ENCFF879RNW/@@download/ENCFF879RNW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF273UOE bed narrowPeak conservative idr thresholded peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF049NKP, ENCFF105DON, ENCFF720ELQ 558737 ENCODE Processing Pipeline f490b1cd8a66ef8e704410f224a64eca https://www.encodeproject.org/files/ENCFF273UOE/@@download/ENCFF273UOE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF984EDU bigBed narrowPeak conservative idr thresholded peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF273UOE 1344668 ENCODE Processing Pipeline b9fa9527a6445034b80a9710be5923e6 https://www.encodeproject.org/files/ENCFF984EDU/@@download/ENCFF984EDU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF905HYT bed narrowPeak optimal idr thresholded peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF049NKP, ENCFF105DON, ENCFF720ELQ 559649 ENCODE Processing Pipeline 137d83640389e81185bbea1ed26ef3ef https://www.encodeproject.org/files/ENCFF905HYT/@@download/ENCFF905HYT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF430KKT bigBed narrowPeak optimal idr thresholded peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF905HYT 1350794 ENCODE Processing Pipeline 686b75d330e43e45ae16482038decd7b https://www.encodeproject.org/files/ENCFF430KKT/@@download/ENCFF430KKT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF614UCP bigWig signal p-value ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF615BCC 1319879368 ENCODE Processing Pipeline 468395c14b1a8a33be82a9c7f73af0ca https://www.encodeproject.org/files/ENCFF614UCP/@@download/ENCFF614UCP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF110ENQ bigWig signal p-value ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF067KIS 1190328161 ENCODE Processing Pipeline dcabdbf2cf8e3da19b812be6f55e0255 https://www.encodeproject.org/files/ENCFF110ENQ/@@download/ENCFF110ENQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF134WUI bigWig signal p-value ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF067KIS, ENCFF615BCC 1883102025 ENCODE Processing Pipeline f424d82b580125b0a5737e7b64c1231e https://www.encodeproject.org/files/ENCFF134WUI/@@download/ENCFF134WUI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF776AJO bigWig fold change over control ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF615BCC 1510403977 ENCODE Processing Pipeline dde812d647e6ebdd2313a109701cd3f3 https://www.encodeproject.org/files/ENCFF776AJO/@@download/ENCFF776AJO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF140OBU bigWig fold change over control ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF067KIS 1444801991 ENCODE Processing Pipeline bb02d75421383093871dc3f4f6d71bf7 https://www.encodeproject.org/files/ENCFF140OBU/@@download/ENCFF140OBU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF975XRR bigWig fold change over control ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF067KIS, ENCFF615BCC 2058507536 ENCODE Processing Pipeline 07a4bafd1cac4034caafe830fede965f https://www.encodeproject.org/files/ENCFF975XRR/@@download/ENCFF975XRR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF145ROK bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF615BCC 6900940 ENCODE Processing Pipeline 089caed7b50ec743cecc5d6d2e8e5a87 https://www.encodeproject.org/files/ENCFF145ROK/@@download/ENCFF145ROK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF493UBU bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF067KIS 6948016 ENCODE Processing Pipeline 428bf0e6cedba7bf4cd73d9a809ea285 https://www.encodeproject.org/files/ENCFF493UBU/@@download/ENCFF493UBU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF908NMM bigBed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF493UBU 13425471 ENCODE Processing Pipeline c59b31082e6b54cd1bb315e993150124 https://www.encodeproject.org/files/ENCFF908NMM/@@download/ENCFF908NMM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF032OFJ bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF067KIS, ENCFF615BCC 7198867 ENCODE Processing Pipeline ffb45e50578c26e3f38e906d5b88bf2a https://www.encodeproject.org/files/ENCFF032OFJ/@@download/ENCFF032OFJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF810QVC bigBed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF145ROK 13488579 ENCODE Processing Pipeline a561caca0987e723ade79a9bca8f7d1a https://www.encodeproject.org/files/ENCFF810QVC/@@download/ENCFF810QVC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF300KQQ bigBed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF032OFJ 13329762 ENCODE Processing Pipeline ab76291492ad50769bc6cd0b4f294fcb https://www.encodeproject.org/files/ENCFF300KQQ/@@download/ENCFF300KQQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF676YIL bed narrowPeak optimal idr thresholded peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF032OFJ, ENCFF145ROK, ENCFF419RSJ, ENCFF493UBU 557178 ENCODE Processing Pipeline c492440f47a8ab79d80167149b188067 https://www.encodeproject.org/files/ENCFF676YIL/@@download/ENCFF676YIL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF916LCF bigBed narrowPeak optimal idr thresholded peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF676YIL 1345966 ENCODE Processing Pipeline 1bca1eccd50dc524464972425d30f137 https://www.encodeproject.org/files/ENCFF916LCF/@@download/ENCFF916LCF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF449ZXL fastq reads ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF393VCX 3140077987 Michael Snyder, Stanford aae9d083873bc31c4e87343227acf518 https://www.encodeproject.org/files/ENCFF449ZXL/@@download/ENCFF449ZXL.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF808UIH fastq reads ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF732NSK 2774798212 Michael Snyder, Stanford b66db6967d2a69eefef2a20750e4ad8f https://www.encodeproject.org/files/ENCFF808UIH/@@download/ENCFF808UIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF393VCX fastq reads ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF449ZXL 3494912270 Michael Snyder, Stanford 50284a84ad99217d5321de24f3b57296 https://www.encodeproject.org/files/ENCFF393VCX/@@download/ENCFF393VCX.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF732NSK fastq reads ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF808UIH 2564178738 Michael Snyder, Stanford 7e674855a69eaef55e2f2580012b90a8 https://www.encodeproject.org/files/ENCFF732NSK/@@download/ENCFF732NSK.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF433UQY bam unfiltered alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF732NSK, ENCFF808UIH 5355685678 ENCODE Processing Pipeline b7a7687a401f05bf3b5ad4cc429759fe https://www.encodeproject.org/files/ENCFF433UQY/@@download/ENCFF433UQY.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF770FZZ bam unfiltered alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 100 ENCFF393VCX, ENCFF449ZXL, ENCFF643CGH 5254231414 ENCODE Processing Pipeline 25adc16aadfb2a2060ff5f1aa6fc6c90 https://www.encodeproject.org/files/ENCFF770FZZ/@@download/ENCFF770FZZ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF102TTM bam unfiltered alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 100 ENCFF732NSK, ENCFF807MUK, ENCFF808UIH 5342125400 ENCODE Processing Pipeline fb23ef5165ec847690774f102eb7d68e https://www.encodeproject.org/files/ENCFF102TTM/@@download/ENCFF102TTM.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF522ENX bam unfiltered alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 100 ENCFF393VCX, ENCFF449ZXL, ENCFF807MUK 5264880412 ENCODE Processing Pipeline 65fb16ba059878bb17f5159c19f977bd https://www.encodeproject.org/files/ENCFF522ENX/@@download/ENCFF522ENX.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF742OPD bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 100 ENCFF393VCX, ENCFF449ZXL, ENCFF643CGH 1531452558 ENCODE Processing Pipeline a18d72e2b1dfa5e4a6ebe93e11bf410c https://www.encodeproject.org/files/ENCFF742OPD/@@download/ENCFF742OPD.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF693VLX bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 100 ENCFF393VCX, ENCFF449ZXL, ENCFF807MUK 1529953763 ENCODE Processing Pipeline f0c38abe76f9a5461cfc6ce00135d9f5 https://www.encodeproject.org/files/ENCFF693VLX/@@download/ENCFF693VLX.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF609UIZ bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 100 ENCFF732NSK, ENCFF807MUK, ENCFF808UIH 4238270070 ENCODE Processing Pipeline c4a52f79aa2a4a887ee08679a919b3d3 https://www.encodeproject.org/files/ENCFF609UIZ/@@download/ENCFF609UIZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF413DPP bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF732NSK, ENCFF808UIH 4245136320 ENCODE Processing Pipeline df56278af8037750f31ff12381e38a76 https://www.encodeproject.org/files/ENCFF413DPP/@@download/ENCFF413DPP.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF179JHS bigWig signal p-value ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF609UIZ, ENCFF823USR 1594958170 ENCODE Processing Pipeline 2f72729b300d032fc41219e562dc00b2 https://www.encodeproject.org/files/ENCFF179JHS/@@download/ENCFF179JHS.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF651VWN bigWig signal p-value ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF447KVS, ENCFF693VLX, ENCFF823USR 1209433180 ENCODE Processing Pipeline b9d969fd461babc821b98946d745dbe4 https://www.encodeproject.org/files/ENCFF651VWN/@@download/ENCFF651VWN.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF891RNV bigWig signal p-value ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF447KVS, ENCFF609UIZ, ENCFF693VLX, ENCFF823USR 1738460537 ENCODE Processing Pipeline 1f0b540b1c07e490af35421ef9e795b1 https://www.encodeproject.org/files/ENCFF891RNV/@@download/ENCFF891RNV.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF075JIJ bigWig fold change over control ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF447KVS, ENCFF693VLX, ENCFF823USR 985263375 ENCODE Processing Pipeline e2cdeb654f495bb2ec85f6086e2dbede https://www.encodeproject.org/files/ENCFF075JIJ/@@download/ENCFF075JIJ.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF746KTR bigWig fold change over control ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF609UIZ, ENCFF823USR 1748772948 ENCODE Processing Pipeline c1000b2b8cff4ff3918c4bcf212d063b https://www.encodeproject.org/files/ENCFF746KTR/@@download/ENCFF746KTR.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF183FYY bigWig fold change over control ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF447KVS, ENCFF609UIZ, ENCFF693VLX, ENCFF823USR 1938640727 ENCODE Processing Pipeline 74ca8162a6ec9f7b9a33b10cf4fb9758 https://www.encodeproject.org/files/ENCFF183FYY/@@download/ENCFF183FYY.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF546TCH bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF447KVS, ENCFF693VLX, ENCFF823USR 5754519 ENCODE Processing Pipeline b5ee5379778f3474e93fd9fb1f8ec7e4 https://www.encodeproject.org/files/ENCFF546TCH/@@download/ENCFF546TCH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF537TPH bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF609UIZ, ENCFF823USR 6847572 ENCODE Processing Pipeline 9a412d4706e5a175632b374fe64d70bb https://www.encodeproject.org/files/ENCFF537TPH/@@download/ENCFF537TPH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF349FSV bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF447KVS, ENCFF609UIZ, ENCFF693VLX, ENCFF823USR 6991697 ENCODE Processing Pipeline 7e4f187300612b04f160a2ae2683fc2e https://www.encodeproject.org/files/ENCFF349FSV/@@download/ENCFF349FSV.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF293BTR bigBed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF546TCH 11105361 ENCODE Processing Pipeline 3c75c4ea92a17fe5e580d8a64855eed9 https://www.encodeproject.org/files/ENCFF293BTR/@@download/ENCFF293BTR.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF016KUL bigBed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF349FSV 11115687 ENCODE Processing Pipeline e69db8b4c65a91befc9eef9ae336c628 https://www.encodeproject.org/files/ENCFF016KUL/@@download/ENCFF016KUL.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF740PSP bigBed narrowPeak conservative idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF029ZBI 130779 ENCODE Processing Pipeline c71719d36a229d5f358e3e5a82507e6f https://www.encodeproject.org/files/ENCFF740PSP/@@download/ENCFF740PSP.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF136GRD bigBed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF537TPH 11239221 ENCODE Processing Pipeline 94cab6ab8858435899bfbf8ab92187e8 https://www.encodeproject.org/files/ENCFF136GRD/@@download/ENCFF136GRD.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF029ZBI bed narrowPeak conservative idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF349FSV, ENCFF537TPH, ENCFF546TCH 44278 ENCODE Processing Pipeline a8e5463cd016451f4f2e173ca663674e https://www.encodeproject.org/files/ENCFF029ZBI/@@download/ENCFF029ZBI.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF973DWU bed narrowPeak optimal idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF349FSV, ENCFF537TPH, ENCFF546TCH 59119 ENCODE Processing Pipeline 42130848c2fe00fbc545781e1089a9c3 https://www.encodeproject.org/files/ENCFF973DWU/@@download/ENCFF973DWU.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF964UHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF973DWU 151495 ENCODE Processing Pipeline c74f5d9f9084f4ae3e839fef61ca20df https://www.encodeproject.org/files/ENCFF964UHJ/@@download/ENCFF964UHJ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF112OLX bigWig signal p-value ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF742OPD, ENCFF746SKT 1147487021 ENCODE Processing Pipeline 09ff425980ababb19f739c0629b8726f https://www.encodeproject.org/files/ENCFF112OLX/@@download/ENCFF112OLX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF612PGE bigWig signal p-value ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF413DPP, ENCFF746SKT 1801662206 ENCODE Processing Pipeline c427f25eb5bb0c8264c11e82220b279a https://www.encodeproject.org/files/ENCFF612PGE/@@download/ENCFF612PGE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF164TOY bigWig signal p-value ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF413DPP, ENCFF742OPD, ENCFF746SKT 1471504444 ENCODE Processing Pipeline 77f2991424c1725030506039653c416f https://www.encodeproject.org/files/ENCFF164TOY/@@download/ENCFF164TOY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF903NIZ bigWig fold change over control ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF742OPD, ENCFF746SKT 987035688 ENCODE Processing Pipeline 603ed88ab11c5d186a5bff04372b108a https://www.encodeproject.org/files/ENCFF903NIZ/@@download/ENCFF903NIZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF622XUD bigWig fold change over control ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF413DPP, ENCFF746SKT 1742576295 ENCODE Processing Pipeline 7085a7b9e8fe63c44220af9b3aa453b3 https://www.encodeproject.org/files/ENCFF622XUD/@@download/ENCFF622XUD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF765BPW bigWig fold change over control ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF413DPP, ENCFF742OPD, ENCFF746SKT 1942482586 ENCODE Processing Pipeline 807cadb2c439e28a61e183879b25f5b9 https://www.encodeproject.org/files/ENCFF765BPW/@@download/ENCFF765BPW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF703KMO bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF191XYH, ENCFF413DPP, ENCFF742OPD, ENCFF746SKT 6929835 ENCODE Processing Pipeline cb75cb0ce0226e9f88197bb4a115cc92 https://www.encodeproject.org/files/ENCFF703KMO/@@download/ENCFF703KMO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF293WES bigBed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF703KMO 11121957 ENCODE Processing Pipeline d349e7776ed6f4ff2d786eee39986d3f https://www.encodeproject.org/files/ENCFF293WES/@@download/ENCFF293WES.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF231MBC bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF191XYH, ENCFF742OPD, ENCFF746SKT 5587499 ENCODE Processing Pipeline 322e8dfca995d9cb54886a90cfb6427c https://www.encodeproject.org/files/ENCFF231MBC/@@download/ENCFF231MBC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF991SMD bigBed narrowPeak conservative idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF236IMY 131164 ENCODE Processing Pipeline bacc39b177449349f4f2d34d7a61158a https://www.encodeproject.org/files/ENCFF991SMD/@@download/ENCFF991SMD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF916FZV bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF191XYH, ENCFF413DPP, ENCFF746SKT 6751622 ENCODE Processing Pipeline cedae007d87e3d2ef51b8744f8f1b6d9 https://www.encodeproject.org/files/ENCFF916FZV/@@download/ENCFF916FZV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF236IMY bed narrowPeak conservative idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF231MBC, ENCFF419RSJ, ENCFF703KMO, ENCFF916FZV 43963 ENCODE Processing Pipeline e2fb8a0bf10e319358310b3a122ee24e https://www.encodeproject.org/files/ENCFF236IMY/@@download/ENCFF236IMY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF321JGX bigBed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF916FZV 11257187 ENCODE Processing Pipeline 34b6dab1144425e629d73f94d962f708 https://www.encodeproject.org/files/ENCFF321JGX/@@download/ENCFF321JGX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF897BHU bigBed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF231MBC 11104273 ENCODE Processing Pipeline 5a234de96e6b25b1a89b4b46256bdad8 https://www.encodeproject.org/files/ENCFF897BHU/@@download/ENCFF897BHU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF223ZAP bigBed narrowPeak optimal idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF675SAG 150154 ENCODE Processing Pipeline f1ca3c927690cf8891f7a8f97a93c094 https://www.encodeproject.org/files/ENCFF223ZAP/@@download/ENCFF223ZAP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF675SAG bed narrowPeak optimal idr thresholded peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF231MBC, ENCFF419RSJ, ENCFF703KMO, ENCFF916FZV 57363 ENCODE Processing Pipeline dd0507b752e842d25aaba2d879fbe2c9 https://www.encodeproject.org/files/ENCFF675SAG/@@download/ENCFF675SAG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF814SDG fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF862VDD 3787857076 Michael Snyder, Stanford 7c50ba44b4d550937c80ea761796cf07 SRA:SRR6214113 https://www.encodeproject.org/files/ENCFF814SDG/@@download/ENCFF814SDG.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF164VNM fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF825EGN 2779990075 Michael Snyder, Stanford 546024629db1c6f1a6b3df803780c06b SRA:SRR6214114 https://www.encodeproject.org/files/ENCFF164VNM/@@download/ENCFF164VNM.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF825EGN fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF164VNM 3240476924 Michael Snyder, Stanford 5319b3159249aa2d434e110871989b72 SRA:SRR6214114 https://www.encodeproject.org/files/ENCFF825EGN/@@download/ENCFF825EGN.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF862VDD fastq reads ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF814SDG 3289215053 Michael Snyder, Stanford e0f4fa24473906614cf4a21cdd4daf85 SRA:SRR6214113 https://www.encodeproject.org/files/ENCFF862VDD/@@download/ENCFF862VDD.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF437STA bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF807MUK, ENCFF814SDG, ENCFF862VDD 6389930203 ENCODE Processing Pipeline a5436d7a1e4dd81fe2cfef9f657e49d6 https://www.encodeproject.org/files/ENCFF437STA/@@download/ENCFF437STA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF772RMA bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF807MUK, ENCFF814SDG, ENCFF862VDD 4849524510 ENCODE Processing Pipeline 839f252392e307f792a119aff38aa6eb https://www.encodeproject.org/files/ENCFF772RMA/@@download/ENCFF772RMA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF723QVM bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF807MUK, ENCFF825EGN 5630191912 ENCODE Processing Pipeline 59d664a61eb77d0044054bec6ad78a04 https://www.encodeproject.org/files/ENCFF723QVM/@@download/ENCFF723QVM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF560XEW bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF807MUK, ENCFF825EGN 4486306129 ENCODE Processing Pipeline ec3d53e71d5bde7528d14412eca67bc5 https://www.encodeproject.org/files/ENCFF560XEW/@@download/ENCFF560XEW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF555KDG bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF643CGH, ENCFF825EGN 5635462643 ENCODE Processing Pipeline f936719c034ea1e4cf46ffcb4800884d https://www.encodeproject.org/files/ENCFF555KDG/@@download/ENCFF555KDG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF028TNY bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF643CGH, ENCFF825EGN 4492061205 ENCODE Processing Pipeline 9b69a61e235305aa48b3fc03e4b47715 https://www.encodeproject.org/files/ENCFF028TNY/@@download/ENCFF028TNY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF816AFX bam unfiltered alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF643CGH, ENCFF814SDG, ENCFF862VDD 6394037043 ENCODE Processing Pipeline 7830680c69f16398baeac5e7ce2f3f94 https://www.encodeproject.org/files/ENCFF816AFX/@@download/ENCFF816AFX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF444PPF bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF643CGH, ENCFF814SDG, ENCFF862VDD 4855928085 ENCODE Processing Pipeline 919d369099b2f65cccd03688e7a51e7a https://www.encodeproject.org/files/ENCFF444PPF/@@download/ENCFF444PPF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF451BXE bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 1644610176 ENCODE Processing Pipeline b97cb5924e28d9c04f326ac9709f6290 https://www.encodeproject.org/files/ENCFF451BXE/@@download/ENCFF451BXE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF755RSS bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF560XEW, ENCFF592WAL, ENCFF772RMA, ENCFF901CND 2381794349 ENCODE Processing Pipeline 6ca2ad9e0a829b2726462e8ecaa1c22b https://www.encodeproject.org/files/ENCFF755RSS/@@download/ENCFF755RSS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF206EJR bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 1494333242 ENCODE Processing Pipeline 51d86a6c35eb61d314a9f6ce5100f7ba https://www.encodeproject.org/files/ENCFF206EJR/@@download/ENCFF206EJR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF244PNH bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 6962772 ENCODE Processing Pipeline a597a04e19cbee928bc7ce829def9157 https://www.encodeproject.org/files/ENCFF244PNH/@@download/ENCFF244PNH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF880NTF bed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF244PNH, ENCFF359FUJ, ENCFF756XID 548610 ENCODE Processing Pipeline ca168092a37a1c29188b592ca7a4bb73 https://www.encodeproject.org/files/ENCFF880NTF/@@download/ENCFF880NTF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF271LUJ bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 1450209908 ENCODE Processing Pipeline 742c11fb6afa25b250dfd35bc7a9dab0 https://www.encodeproject.org/files/ENCFF271LUJ/@@download/ENCFF271LUJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF726DUS bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 1805947433 ENCODE Processing Pipeline 8c654836d1e1b26ca6575e832483c4e0 https://www.encodeproject.org/files/ENCFF726DUS/@@download/ENCFF726DUS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF937HON bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF560XEW, ENCFF592WAL, ENCFF772RMA, ENCFF901CND 2478563944 ENCODE Processing Pipeline b015d6457c2d72ac4cd46f35e1886298 https://www.encodeproject.org/files/ENCFF937HON/@@download/ENCFF937HON.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF359FUJ bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 7006203 ENCODE Processing Pipeline cce3be3f04bf615b9a5f510bee1382df https://www.encodeproject.org/files/ENCFF359FUJ/@@download/ENCFF359FUJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF068UDY bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF244PNH 13609870 ENCODE Processing Pipeline eaa162191615afd60845b9f6cdd53cf7 https://www.encodeproject.org/files/ENCFF068UDY/@@download/ENCFF068UDY.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF807AKG bed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF244PNH, ENCFF359FUJ, ENCFF756XID 584709 ENCODE Processing Pipeline c254faee11bb0ce333fb9396a04593c5 https://www.encodeproject.org/files/ENCFF807AKG/@@download/ENCFF807AKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF987SEG bigBed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF807AKG 1196373 ENCODE Processing Pipeline b3e4ea51d18316522f7ef5802400c210 https://www.encodeproject.org/files/ENCFF987SEG/@@download/ENCFF987SEG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF756XID bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF560XEW, ENCFF592WAL, ENCFF772RMA, ENCFF901CND 7199099 ENCODE Processing Pipeline acb889d6b515f1cb7393469e4ad92de5 https://www.encodeproject.org/files/ENCFF756XID/@@download/ENCFF756XID.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF709KLE bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF359FUJ 13402879 ENCODE Processing Pipeline 5568534dafadc140efdfc5bea2caf3a5 https://www.encodeproject.org/files/ENCFF709KLE/@@download/ENCFF709KLE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF395YIX bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF756XID 13450668 ENCODE Processing Pipeline febdcf1948a04617d178c7e83808ceb7 https://www.encodeproject.org/files/ENCFF395YIX/@@download/ENCFF395YIX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF596FOM bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF028TNY, ENCFF322NTO, ENCFF666ATR 1474770328 ENCODE Processing Pipeline b2a2c1a43b298f3f1e707e6c962528a4 https://www.encodeproject.org/files/ENCFF596FOM/@@download/ENCFF596FOM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF638AHR bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF028TNY, ENCFF322NTO, ENCFF666ATR 1791433800 ENCODE Processing Pipeline d6574a545f1e939dae6e9ce53f512963 https://www.encodeproject.org/files/ENCFF638AHR/@@download/ENCFF638AHR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF686WUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF880NTF 1137817 ENCODE Processing Pipeline 34b54f972b2ebc980171b24f44aa36e1 https://www.encodeproject.org/files/ENCFF686WUZ/@@download/ENCFF686WUZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF472PAT bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF444PPF 1456177904 ENCODE Processing Pipeline 8b00ffc82bc08166e9a6c5d39879e450 https://www.encodeproject.org/files/ENCFF472PAT/@@download/ENCFF472PAT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF660TSO bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF444PPF 1506176881 ENCODE Processing Pipeline 3d32284482208b2598f926016158c685 https://www.encodeproject.org/files/ENCFF660TSO/@@download/ENCFF660TSO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF142FCV bigWig signal p-value ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF028TNY, ENCFF322NTO, ENCFF444PPF, ENCFF666ATR 2383198142 ENCODE Processing Pipeline fbbf65ec2ab9b487082d03085883eea4 https://www.encodeproject.org/files/ENCFF142FCV/@@download/ENCFF142FCV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF754BSN bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF072IYL 13578682 ENCODE Processing Pipeline 730349a14f364c69002d94d15f723e82 https://www.encodeproject.org/files/ENCFF754BSN/@@download/ENCFF754BSN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF023ZOD bigBed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF948CPI 1252595 ENCODE Processing Pipeline fa62455136161f9903de5b5f6688a6f5 https://www.encodeproject.org/files/ENCFF023ZOD/@@download/ENCFF023ZOD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF816RPC bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF093VDW 13477663 ENCODE Processing Pipeline 7039b4ec3293ddf4a303c121fcecf0e2 https://www.encodeproject.org/files/ENCFF816RPC/@@download/ENCFF816RPC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF992JJW bigWig fold change over control ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF028TNY, ENCFF322NTO, ENCFF444PPF, ENCFF666ATR 2488859809 ENCODE Processing Pipeline c70c00a7ce345f35560d7ee74efb9739 https://www.encodeproject.org/files/ENCFF992JJW/@@download/ENCFF992JJW.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF992MPI bigBed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF003ZKO 13727500 ENCODE Processing Pipeline 7f11b09372703badf2f98c23d644d550 https://www.encodeproject.org/files/ENCFF992MPI/@@download/ENCFF992MPI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF529ZQW bed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF003ZKO, ENCFF072IYL, ENCFF093VDW, ENCFF419RSJ 583004 ENCODE Processing Pipeline 306c0c1a6bedf24e508e3f6bd229dd62 https://www.encodeproject.org/files/ENCFF529ZQW/@@download/ENCFF529ZQW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF948CPI bed narrowPeak optimal idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF003ZKO, ENCFF072IYL, ENCFF093VDW, ENCFF419RSJ 621012 ENCODE Processing Pipeline 4c3b138d189d14558311eafc7bdc5880 https://www.encodeproject.org/files/ENCFF948CPI/@@download/ENCFF948CPI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF050AWG bigBed narrowPeak conservative idr thresholded peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF529ZQW 1191650 ENCODE Processing Pipeline 9df83e45bccef2f2f20cbf4135130303 https://www.encodeproject.org/files/ENCFF050AWG/@@download/ENCFF050AWG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF003ZKO bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF028TNY, ENCFF322NTO, ENCFF666ATR 7055143 ENCODE Processing Pipeline 2f2e4df444bbdca4061ba4f1c520a893 https://www.encodeproject.org/files/ENCFF003ZKO/@@download/ENCFF003ZKO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF093VDW bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF322NTO, ENCFF444PPF 7063820 ENCODE Processing Pipeline f079f3b5e7fc0e5f64bdf32efb131bf1 https://www.encodeproject.org/files/ENCFF093VDW/@@download/ENCFF093VDW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF072IYL bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF028TNY, ENCFF322NTO, ENCFF444PPF, ENCFF666ATR 7301694 ENCODE Processing Pipeline 18b8efb487caceca2b82cf6437577fb7 https://www.encodeproject.org/files/ENCFF072IYL/@@download/ENCFF072IYL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF125PLE bam unfiltered alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 100 ENCFF300KRT, ENCFF807MUK, ENCFF847ZNJ 4452842636 ENCODE Processing Pipeline 269d8cb7e754930844fe6892d73d4217 https://www.encodeproject.org/files/ENCFF125PLE/@@download/ENCFF125PLE.bam hg19 released file validation error mismatched file status ENCFF403SSR bam unfiltered alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 100 ENCFF146CPM, ENCFF807MUK, ENCFF899BAM 4384360181 ENCODE Processing Pipeline 4168d0b3895288a55182f311f28a6aac https://www.encodeproject.org/files/ENCFF403SSR/@@download/ENCFF403SSR.bam hg19 released file validation error mismatched file status ENCFF847ZNJ fastq reads ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF300KRT 1966516641 Michael Snyder, Stanford 943ebf4a9d71d0d4aabebe5676beecb1 SRA:SRR5111242 https://www.encodeproject.org/files/ENCFF847ZNJ/@@download/ENCFF847ZNJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released file validation error mismatched file status ENCFF146CPM fastq reads ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF899BAM 2031481033 Michael Snyder, Stanford 508fe83e712b5a7a2e4378cf5ed14588 SRA:SRR5111243 https://www.encodeproject.org/files/ENCFF146CPM/@@download/ENCFF146CPM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released file validation error mismatched file status ENCFF899BAM fastq reads ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF146CPM 1945276195 Michael Snyder, Stanford 1963c347f572c9e12c046e5412e43b2b SRA:SRR5111243 https://www.encodeproject.org/files/ENCFF899BAM/@@download/ENCFF899BAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released file validation error mismatched file status ENCFF300KRT fastq reads ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF847ZNJ 2049455028 Michael Snyder, Stanford aafcd61635d104be639c38c049e660e5 SRA:SRR5111242 https://www.encodeproject.org/files/ENCFF300KRT/@@download/ENCFF300KRT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released file validation error mismatched file status ENCFF069VLP bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF146CPM, ENCFF807MUK, ENCFF899BAM 3690499651 ENCODE Processing Pipeline cdf25afb15b52232a3b3b65bf300baff https://www.encodeproject.org/files/ENCFF069VLP/@@download/ENCFF069VLP.bam hg19 released file validation error mismatched file status ENCFF984NVJ bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF300KRT, ENCFF807MUK, ENCFF847ZNJ 3813242555 ENCODE Processing Pipeline 1324f3ecc9a4792eb396dbee8256dc91 https://www.encodeproject.org/files/ENCFF984NVJ/@@download/ENCFF984NVJ.bam hg19 released file validation error mismatched file status ENCFF788VVJ bigWig signal p-value ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF069VLP 888479849 ENCODE Processing Pipeline 3041ef95903fd77664a17f5043b1202d https://www.encodeproject.org/files/ENCFF788VVJ/@@download/ENCFF788VVJ.bigWig hg19 released file validation error mismatched file status ENCFF954DGR bigWig fold change over control ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF984NVJ 1134403237 ENCODE Processing Pipeline 6a80f0186621595b88969bb048d0e50a https://www.encodeproject.org/files/ENCFF954DGR/@@download/ENCFF954DGR.bigWig hg19 released file validation error mismatched file status ENCFF906YNI bigWig signal p-value ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF984NVJ 1247323422 ENCODE Processing Pipeline c0a2f38d62a1d61d7a0e2b89fb8a45f8 https://www.encodeproject.org/files/ENCFF906YNI/@@download/ENCFF906YNI.bigWig hg19 released file validation error mismatched file status ENCFF394JZU bigWig signal p-value ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF069VLP, ENCFF581ZJL, ENCFF984NVJ 1988586707 ENCODE Processing Pipeline 5fd9d5a6d61a9b9f4a99e19a9dc8b241 https://www.encodeproject.org/files/ENCFF394JZU/@@download/ENCFF394JZU.bigWig hg19 released file validation error mismatched file status ENCFF739MHD bigWig fold change over control ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF069VLP, ENCFF581ZJL, ENCFF984NVJ 2019200449 ENCODE Processing Pipeline f8411ce6c6a61401b20997589021d397 https://www.encodeproject.org/files/ENCFF739MHD/@@download/ENCFF739MHD.bigWig hg19 released file validation error mismatched file status ENCFF361EMP bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF984NVJ 6580997 ENCODE Processing Pipeline 2299b20bf8507132afdc05f47fa6d9ae https://www.encodeproject.org/files/ENCFF361EMP/@@download/ENCFF361EMP.bed.gz hg19 released file validation error mismatched file status ENCFF830THH bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF069VLP 6570586 ENCODE Processing Pipeline 8e908668460f3de17877175ec4ff2aff https://www.encodeproject.org/files/ENCFF830THH/@@download/ENCFF830THH.bed.gz hg19 released file validation error mismatched file status ENCFF582OBV bigBed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF108JTM 13082465 ENCODE Processing Pipeline 56c8fbe5675bb52ca1059f79ca3d5478 https://www.encodeproject.org/files/ENCFF582OBV/@@download/ENCFF582OBV.bigBed hg19 released file validation error mismatched file status ENCFF848NAI bigWig fold change over control ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF069VLP 1074750675 ENCODE Processing Pipeline b334c01c494ce854287f5248b4153399 https://www.encodeproject.org/files/ENCFF848NAI/@@download/ENCFF848NAI.bigWig hg19 released file validation error mismatched file status ENCFF709OCN bigBed narrowPeak conservative idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF448ESU 197135 ENCODE Processing Pipeline c6af907800845d2baa527a46b6a9f5a7 https://www.encodeproject.org/files/ENCFF709OCN/@@download/ENCFF709OCN.bigBed hg19 released file validation error mismatched status, mismatched file status ENCFF108JTM bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF069VLP, ENCFF581ZJL, ENCFF984NVJ 7209529 ENCODE Processing Pipeline da8182b7bcf60321b0c0de562530d7b3 https://www.encodeproject.org/files/ENCFF108JTM/@@download/ENCFF108JTM.bed.gz hg19 released file validation error mismatched file status ENCFF820ZHR bed narrowPeak conservative idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF108JTM, ENCFF361EMP, ENCFF830THH 75366 ENCODE Processing Pipeline 6d38cb6be34d63761a9c45259f85d192 https://www.encodeproject.org/files/ENCFF820ZHR/@@download/ENCFF820ZHR.bed.gz hg19 released file validation error mismatched file status ENCFF499TTU bigBed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF361EMP 13257407 ENCODE Processing Pipeline ce4663582e321c96b803de00c160fc09 https://www.encodeproject.org/files/ENCFF499TTU/@@download/ENCFF499TTU.bigBed hg19 released file validation error mismatched file status ENCFF784NDM bigBed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF830THH 13251508 ENCODE Processing Pipeline 745156bb087213f29047bb2f064f26d1 https://www.encodeproject.org/files/ENCFF784NDM/@@download/ENCFF784NDM.bigBed hg19 released file validation error mismatched file status ENCFF643TEZ bed narrowPeak optimal idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF108JTM, ENCFF361EMP, ENCFF830THH 110168 ENCODE Processing Pipeline 88bb8380a704122b98e88220e68c0d21 https://www.encodeproject.org/files/ENCFF643TEZ/@@download/ENCFF643TEZ.bed.gz hg19 released file validation error mismatched file status ENCFF181MGL bigBed narrowPeak optimal idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF513DLC 297246 ENCODE Processing Pipeline ecd15f5e100aa2276ef8be42dc47c1c8 https://www.encodeproject.org/files/ENCFF181MGL/@@download/ENCFF181MGL.bigBed hg19 released file validation error mismatched status, mismatched file status ENCFF357YDT bam unfiltered alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 100 ENCFF146CPM, ENCFF643CGH, ENCFF899BAM 4387689463 ENCODE Processing Pipeline 6e80befe023b7aabab81ba6e2a6d69d5 https://www.encodeproject.org/files/ENCFF357YDT/@@download/ENCFF357YDT.bam GRCh38 released file validation error mismatched file status ENCFF014PIX bam unfiltered alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 100 ENCFF300KRT, ENCFF643CGH, ENCFF847ZNJ 4457559555 ENCODE Processing Pipeline caff5b073108054aa46fecab71ba78e2 https://www.encodeproject.org/files/ENCFF014PIX/@@download/ENCFF014PIX.bam GRCh38 released file validation error mismatched file status ENCFF201MXQ bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 100 ENCFF300KRT, ENCFF643CGH, ENCFF847ZNJ 3817513034 ENCODE Processing Pipeline 5f63e668f1b0d55856336b4b5a1d2460 https://www.encodeproject.org/files/ENCFF201MXQ/@@download/ENCFF201MXQ.bam GRCh38 released file validation error mismatched file status ENCFF049RJI bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 100 ENCFF146CPM, ENCFF643CGH, ENCFF899BAM 3694262336 ENCODE Processing Pipeline 2490bae5c0593f80cbaf034af720b459 https://www.encodeproject.org/files/ENCFF049RJI/@@download/ENCFF049RJI.bam GRCh38 released file validation error mismatched file status ENCFF599NAO bigWig signal p-value ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF201MXQ, ENCFF910IKB 986225200 ENCODE Processing Pipeline af01b36387d7e1db0ca3bd67f5da47f9 https://www.encodeproject.org/files/ENCFF599NAO/@@download/ENCFF599NAO.bigWig GRCh38 released file validation error mismatched file status ENCFF823AWQ bigWig signal p-value ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF049RJI, ENCFF227IZS 1084297233 ENCODE Processing Pipeline aa14f40916ea320bd3a213a27de36e04 https://www.encodeproject.org/files/ENCFF823AWQ/@@download/ENCFF823AWQ.bigWig GRCh38 released file validation error mismatched file status ENCFF785SNQ bigWig signal p-value ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF049RJI, ENCFF201MXQ, ENCFF227IZS, ENCFF910IKB 1771019759 ENCODE Processing Pipeline bb455e516dbba71f73f2b92dc6ef315e https://www.encodeproject.org/files/ENCFF785SNQ/@@download/ENCFF785SNQ.bigWig GRCh38 released file validation error mismatched file status ENCFF113UDB bigWig fold change over control ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF201MXQ, ENCFF910IKB 1137686255 ENCODE Processing Pipeline 21eaf0f79cba7c4b14093312c84e8473 https://www.encodeproject.org/files/ENCFF113UDB/@@download/ENCFF113UDB.bigWig GRCh38 released file validation error mismatched file status ENCFF595ODW bigWig fold change over control ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF049RJI, ENCFF227IZS 1083314893 ENCODE Processing Pipeline a1cd4b5d76cd5ef492bedee53ffd4062 https://www.encodeproject.org/files/ENCFF595ODW/@@download/ENCFF595ODW.bigWig GRCh38 released file validation error mismatched file status ENCFF738RCM bigWig fold change over control ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF049RJI, ENCFF201MXQ, ENCFF227IZS, ENCFF910IKB 2053047493 ENCODE Processing Pipeline 9a67ef05fb695f22d07342df0c6cb0c5 https://www.encodeproject.org/files/ENCFF738RCM/@@download/ENCFF738RCM.bigWig GRCh38 released file validation error mismatched file status ENCFF037YLO bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF201MXQ, ENCFF910IKB 6471171 ENCODE Processing Pipeline b13e77a8ec9e9df200bf03f48cdec82f https://www.encodeproject.org/files/ENCFF037YLO/@@download/ENCFF037YLO.bed.gz GRCh38 released file validation error mismatched file status ENCFF474XWG bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF049RJI, ENCFF227IZS 6439941 ENCODE Processing Pipeline 6a74e53dc7a0371df3a3a792014f3e41 https://www.encodeproject.org/files/ENCFF474XWG/@@download/ENCFF474XWG.bed.gz GRCh38 released file validation error mismatched file status ENCFF214AZP bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF049RJI, ENCFF201MXQ, ENCFF227IZS, ENCFF910IKB 7187945 ENCODE Processing Pipeline 7b39406b31830920a9c3fc490e67ab97 https://www.encodeproject.org/files/ENCFF214AZP/@@download/ENCFF214AZP.bed.gz GRCh38 released file validation error mismatched file status ENCFF641MRH bigBed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF037YLO 13263540 ENCODE Processing Pipeline 1f05094d207527389e5d0a86406f7569 https://www.encodeproject.org/files/ENCFF641MRH/@@download/ENCFF641MRH.bigBed GRCh38 released file validation error mismatched file status ENCFF486BQA bigBed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF474XWG 13259116 ENCODE Processing Pipeline 191e537cd4ba288488bddb7d49fcf9b0 https://www.encodeproject.org/files/ENCFF486BQA/@@download/ENCFF486BQA.bigBed GRCh38 released file validation error mismatched file status ENCFF715XXQ bigBed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF214AZP 13083074 ENCODE Processing Pipeline 596db3cead4f48510722eb482cbaf014 https://www.encodeproject.org/files/ENCFF715XXQ/@@download/ENCFF715XXQ.bigBed GRCh38 released file validation error mismatched file status ENCFF575VHZ bed narrowPeak conservative idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF037YLO, ENCFF214AZP, ENCFF419RSJ, ENCFF474XWG 74731 ENCODE Processing Pipeline 08d5ef79db4c86cb32b7263283fa881e https://www.encodeproject.org/files/ENCFF575VHZ/@@download/ENCFF575VHZ.bed.gz GRCh38 released file validation error mismatched file status ENCFF303KZO bigBed narrowPeak conservative idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF575VHZ 197299 ENCODE Processing Pipeline 8c4f479afa2ac55e596a8936bbb058cc https://www.encodeproject.org/files/ENCFF303KZO/@@download/ENCFF303KZO.bigBed GRCh38 released file validation error mismatched file status ENCFF384ALH bed narrowPeak optimal idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF037YLO, ENCFF214AZP, ENCFF419RSJ, ENCFF474XWG 111921 ENCODE Processing Pipeline 3e1236ba63044fac20b89dfacb9f2191 https://www.encodeproject.org/files/ENCFF384ALH/@@download/ENCFF384ALH.bed.gz GRCh38 released file validation error mismatched file status ENCFF274OEQ bigBed narrowPeak optimal idr thresholded peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF384ALH 303169 ENCODE Processing Pipeline 75e797b38cdb5a48e399c80b75c9a35f https://www.encodeproject.org/files/ENCFF274OEQ/@@download/ENCFF274OEQ.bigBed GRCh38 released file validation error mismatched file status ENCFF134IZQ fastq reads ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 1144543613 Richard Myers, HAIB e29fde4f4dcc09a40467c0cdc6a51842 SRA:SRR5339086 https://www.encodeproject.org/files/ENCFF134IZQ/@@download/ENCFF134IZQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF096HOR fastq reads ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1009759704 Richard Myers, HAIB 209380235e939bf9d2c97827546197d5 SRA:SRR5339087 https://www.encodeproject.org/files/ENCFF096HOR/@@download/ENCFF096HOR.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF600ZGX bigWig signal p-value ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF606ZAJ 426982615 ENCODE Processing Pipeline caef4eddf55dc12b9cd406fa306b1af1 https://www.encodeproject.org/files/ENCFF600ZGX/@@download/ENCFF600ZGX.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF622TCN bigWig fold change over control ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF606ZAJ 377416629 ENCODE Processing Pipeline 9eab1f6b91e2c6df15cf1f15051c95e9 https://www.encodeproject.org/files/ENCFF622TCN/@@download/ENCFF622TCN.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF812TKD bigWig signal p-value ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF455FCE, ENCFF606ZAJ 456845957 ENCODE Processing Pipeline fa413068ff455bf79def29b849ac19b4 https://www.encodeproject.org/files/ENCFF812TKD/@@download/ENCFF812TKD.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF970TCG bigWig fold change over control ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF455FCE, ENCFF606ZAJ 692104826 ENCODE Processing Pipeline 6acbd2a08ced57517abb96501aa69874 https://www.encodeproject.org/files/ENCFF970TCG/@@download/ENCFF970TCG.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF724JVY bam unfiltered alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 50 ENCFF096HOR, ENCFF643CGH 1167646288 ENCODE Processing Pipeline cc86f97202362c850e8350868c281c5e https://www.encodeproject.org/files/ENCFF724JVY/@@download/ENCFF724JVY.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF672SRH bam unfiltered alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 50 ENCFF134IZQ, ENCFF643CGH 1315813448 ENCODE Processing Pipeline 197a3f0a9ce4463640338204fdb7f03b https://www.encodeproject.org/files/ENCFF672SRH/@@download/ENCFF672SRH.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF209RNM bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 50 ENCFF096HOR, ENCFF643CGH 888988940 ENCODE Processing Pipeline 8f49d3a3f7c3ba6478df41f47cbed61e https://www.encodeproject.org/files/ENCFF209RNM/@@download/ENCFF209RNM.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF233III bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 50 ENCFF134IZQ, ENCFF643CGH 1011712675 ENCODE Processing Pipeline ea77e2e536c2216be9795892c1496464 https://www.encodeproject.org/files/ENCFF233III/@@download/ENCFF233III.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF282RQA bigWig signal p-value ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF209RNM, ENCFF582CVJ 427192110 ENCODE Processing Pipeline 87adfac9ed054d2ef7f14a653acfe629 https://www.encodeproject.org/files/ENCFF282RQA/@@download/ENCFF282RQA.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF761EBT bigWig signal p-value ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF233III, ENCFF582CVJ 466066748 ENCODE Processing Pipeline 3927f52f0839219fc0a06785ffcc8c4f https://www.encodeproject.org/files/ENCFF761EBT/@@download/ENCFF761EBT.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF035XFG bigWig signal p-value ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF209RNM, ENCFF233III, ENCFF582CVJ 456848676 ENCODE Processing Pipeline a81ee9d440c3a622e0aa6573d1bd5fe3 https://www.encodeproject.org/files/ENCFF035XFG/@@download/ENCFF035XFG.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF400UVI bigWig fold change over control ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF209RNM, ENCFF582CVJ 375800579 ENCODE Processing Pipeline 3d9becf8cc9d731e45833b0155a28e74 https://www.encodeproject.org/files/ENCFF400UVI/@@download/ENCFF400UVI.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF306IHM bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF233III, ENCFF582CVJ 4894198 ENCODE Processing Pipeline f938443985e9af06ef32f68fdcb53f8a https://www.encodeproject.org/files/ENCFF306IHM/@@download/ENCFF306IHM.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF744DQP bigWig fold change over control ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF209RNM, ENCFF233III, ENCFF582CVJ 703616522 ENCODE Processing Pipeline 7750da5a45425590028afc5c543508f7 https://www.encodeproject.org/files/ENCFF744DQP/@@download/ENCFF744DQP.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF124BJZ bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF209RNM, ENCFF582CVJ 4827823 ENCODE Processing Pipeline 559d645e945bb12410df56fb76613318 https://www.encodeproject.org/files/ENCFF124BJZ/@@download/ENCFF124BJZ.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF498MEI bigWig fold change over control ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF233III, ENCFF582CVJ 437480385 ENCODE Processing Pipeline 5979503e98ee9a5448c6c2baab09de08 https://www.encodeproject.org/files/ENCFF498MEI/@@download/ENCFF498MEI.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF022VXY bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF209RNM, ENCFF233III, ENCFF582CVJ 5739002 ENCODE Processing Pipeline 8f50b1f14a46660e01b8927886ca5c32 https://www.encodeproject.org/files/ENCFF022VXY/@@download/ENCFF022VXY.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF394XXK bigBed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF306IHM 10864993 ENCODE Processing Pipeline 1fa3c1cc509d75c39b78d7e3ce8acb06 https://www.encodeproject.org/files/ENCFF394XXK/@@download/ENCFF394XXK.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF064VYZ bigBed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF124BJZ 10871728 ENCODE Processing Pipeline 6bb5f2b40749a67879a492cb99c47aa0 https://www.encodeproject.org/files/ENCFF064VYZ/@@download/ENCFF064VYZ.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF318JJJ bigBed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF022VXY 13376421 ENCODE Processing Pipeline 8b473b22ba48edc2dc4db77c5f8660ed https://www.encodeproject.org/files/ENCFF318JJJ/@@download/ENCFF318JJJ.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF207CLF bed narrowPeak optimal idr thresholded peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF022VXY, ENCFF124BJZ, ENCFF306IHM, ENCFF419RSJ 150299 ENCODE Processing Pipeline 004a1bb32c3d90958e9b69189fe4f993 https://www.encodeproject.org/files/ENCFF207CLF/@@download/ENCFF207CLF.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF347YSC bigBed narrowPeak optimal idr thresholded peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF207CLF 334284 ENCODE Processing Pipeline fa555b0fa1fe9e9c745443a6eac014a6 https://www.encodeproject.org/files/ENCFF347YSC/@@download/ENCFF347YSC.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF787BEJ bam unfiltered alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 50 ENCFF096HOR, ENCFF807MUK 1162752421 ENCODE Processing Pipeline 8d902ba184bed4fb3568077fd59e3862 https://www.encodeproject.org/files/ENCFF787BEJ/@@download/ENCFF787BEJ.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF900NYR bam unfiltered alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 50 ENCFF134IZQ, ENCFF807MUK 1310404690 ENCODE Processing Pipeline 0d166799cdf4d088c6a71da6c0e32fe6 https://www.encodeproject.org/files/ENCFF900NYR/@@download/ENCFF900NYR.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF606ZAJ bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 50 ENCFF096HOR, ENCFF807MUK 888926028 ENCODE Processing Pipeline bebe0a87636faf45d7a456ddb31fbcbe https://www.encodeproject.org/files/ENCFF606ZAJ/@@download/ENCFF606ZAJ.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF455FCE bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 50 ENCFF134IZQ, ENCFF807MUK 1011638566 ENCODE Processing Pipeline 11521044bf8510823db572a13e838940 https://www.encodeproject.org/files/ENCFF455FCE/@@download/ENCFF455FCE.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF233YJW bigWig signal p-value ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF455FCE 448966440 ENCODE Processing Pipeline 7664f2f84def4f447a9906c25334424a https://www.encodeproject.org/files/ENCFF233YJW/@@download/ENCFF233YJW.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF120WWX bigWig fold change over control ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF455FCE 413923524 ENCODE Processing Pipeline 845afc2f5c331f5d6ed973f0136518ae https://www.encodeproject.org/files/ENCFF120WWX/@@download/ENCFF120WWX.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF951JQE bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF606ZAJ 4863345 ENCODE Processing Pipeline f2e1c6a0738cd3a86f7b818d77934019 https://www.encodeproject.org/files/ENCFF951JQE/@@download/ENCFF951JQE.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF778JVV bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF455FCE 4899504 ENCODE Processing Pipeline 8ff62ab3cd20a8f08c8c09deea1f1b79 https://www.encodeproject.org/files/ENCFF778JVV/@@download/ENCFF778JVV.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF317NTX bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF455FCE, ENCFF606ZAJ 5731841 ENCODE Processing Pipeline 5cdedf993ed45de7f03070a0942d18a1 https://www.encodeproject.org/files/ENCFF317NTX/@@download/ENCFF317NTX.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF859WBX bigBed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF951JQE 10865467 ENCODE Processing Pipeline 3468e8df7ba27383e6a5b2a4df17f397 https://www.encodeproject.org/files/ENCFF859WBX/@@download/ENCFF859WBX.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF673SWS bigBed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF778JVV 10861557 ENCODE Processing Pipeline 27585b6244a88875d7657949c8ac7d22 https://www.encodeproject.org/files/ENCFF673SWS/@@download/ENCFF673SWS.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF694GFP bigBed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF317NTX 13362208 ENCODE Processing Pipeline 01154fbdc443ca9860e01c92d2b4968c https://www.encodeproject.org/files/ENCFF694GFP/@@download/ENCFF694GFP.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF786OZJ bed narrowPeak conservative idr thresholded peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF317NTX, ENCFF778JVV, ENCFF951JQE 145247 ENCODE Processing Pipeline 63fffb2b95071b739430ff0bf6350546 https://www.encodeproject.org/files/ENCFF786OZJ/@@download/ENCFF786OZJ.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF395ABY bigBed narrowPeak conservative idr thresholded peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF786OZJ 327120 ENCODE Processing Pipeline 04b3c9809c112906ece65a22b2ba1fb4 https://www.encodeproject.org/files/ENCFF395ABY/@@download/ENCFF395ABY.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF930DKI bed narrowPeak optimal idr thresholded peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF317NTX, ENCFF778JVV, ENCFF951JQE 147187 ENCODE Processing Pipeline f9a4f8231a7185827fb5ffa320058755 https://www.encodeproject.org/files/ENCFF930DKI/@@download/ENCFF930DKI.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF778ZXL bigBed narrowPeak optimal idr thresholded peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF930DKI 330258 ENCODE Processing Pipeline 51a989e755fcf269de94b7f79d5aec5a https://www.encodeproject.org/files/ENCFF778ZXL/@@download/ENCFF778ZXL.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF272FAB fastq reads ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF581VOV 2484766842 Michael Snyder, Stanford 5d0e6d2427467172ea77437c7047c200 SRA:SRR6214007 https://www.encodeproject.org/files/ENCFF272FAB/@@download/ENCFF272FAB.fastq.gz Illumina HiSeq 4000 /files/ENCFF841DOK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF581VOV fastq reads ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF272FAB 2254794683 Michael Snyder, Stanford 24a83a202750c2319a2198e5aaf871af SRA:SRR6214007 https://www.encodeproject.org/files/ENCFF581VOV/@@download/ENCFF581VOV.fastq.gz Illumina HiSeq 4000 /files/ENCFF727RJU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF411FLB bam unfiltered alignments ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF272FAB, ENCFF581VOV, ENCFF807MUK 4695865526 ENCODE Processing Pipeline 80b9a687c0df2b314c48329893470ccf https://www.encodeproject.org/files/ENCFF411FLB/@@download/ENCFF411FLB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF007DFB bam alignments ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF272FAB, ENCFF581VOV, ENCFF807MUK 3724761858 ENCODE Processing Pipeline 3f6916044a52685bbdc2c3a245bb0cbe https://www.encodeproject.org/files/ENCFF007DFB/@@download/ENCFF007DFB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF037OWK bam unfiltered alignments ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF272FAB, ENCFF581VOV, ENCFF643CGH 4706564132 ENCODE Processing Pipeline 5b1d760ed9f0b8810be7cdc44c3778fd https://www.encodeproject.org/files/ENCFF037OWK/@@download/ENCFF037OWK.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF677KNU bam alignments ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF272FAB, ENCFF581VOV, ENCFF643CGH 3729337259 ENCODE Processing Pipeline 59b711cf33f70e31fb350948eb6f049b https://www.encodeproject.org/files/ENCFF677KNU/@@download/ENCFF677KNU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF535KEH bigWig signal p-value ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF416WIS, ENCFF677KNU 1109387424 ENCODE Processing Pipeline eabe43bcffb6afa4b98d0ae53c8824db https://www.encodeproject.org/files/ENCFF535KEH/@@download/ENCFF535KEH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF570HDD bed narrowPeak peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF416WIS, ENCFF677KNU 4764214 ENCODE Processing Pipeline 833e0601f27f911d853b81d7ca683881 https://www.encodeproject.org/files/ENCFF570HDD/@@download/ENCFF570HDD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF622QOC bigBed narrowPeak peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF570HDD 11629403 ENCODE Processing Pipeline 39c49184b0531ccccd16ea63e55a24f2 https://www.encodeproject.org/files/ENCFF622QOC/@@download/ENCFF622QOC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF912XIE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF570HDD 2651 ENCODE Processing Pipeline 6d4861616fd2a67aae6b14c9971925f1 https://www.encodeproject.org/files/ENCFF912XIE/@@download/ENCFF912XIE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF663ADD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF912XIE 56010 ENCODE Processing Pipeline 80c80f083db7d562ab4ebc05caf61fef https://www.encodeproject.org/files/ENCFF663ADD/@@download/ENCFF663ADD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF913XZA bigWig fold change over control ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF416WIS, ENCFF677KNU 1101072192 ENCODE Processing Pipeline 9b87eb44ffbcbff326e2ff856f6087a4 https://www.encodeproject.org/files/ENCFF913XZA/@@download/ENCFF913XZA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF471ZNT bigWig signal p-value ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF007DFB, ENCFF075IXF 1106224092 ENCODE Processing Pipeline adf425963bdac256bcd66a6f90a24fc4 https://www.encodeproject.org/files/ENCFF471ZNT/@@download/ENCFF471ZNT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF617RRS bigWig fold change over control ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF007DFB, ENCFF075IXF 1089606567 ENCODE Processing Pipeline bb043af65f6bca6c18f1078274f1028a https://www.encodeproject.org/files/ENCFF617RRS/@@download/ENCFF617RRS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF286IKG bed narrowPeak peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF007DFB, ENCFF075IXF 4762875 ENCODE Processing Pipeline 3c4f7710d70c86e7f07f5e0bf9a8294e https://www.encodeproject.org/files/ENCFF286IKG/@@download/ENCFF286IKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF369PSF bigBed narrowPeak peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF286IKG 11591852 ENCODE Processing Pipeline 87bfead17e9a73ba9f1d3c5bde059260 https://www.encodeproject.org/files/ENCFF369PSF/@@download/ENCFF369PSF.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF751UAF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF286IKG 2334 ENCODE Processing Pipeline fed07f3863d3514a76098afe371f680f https://www.encodeproject.org/files/ENCFF751UAF/@@download/ENCFF751UAF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF804CHH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF751UAF 53911 ENCODE Processing Pipeline 02697628704fff37340893392a722d7c https://www.encodeproject.org/files/ENCFF804CHH/@@download/ENCFF804CHH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF719EHQ bam unfiltered alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 100 ENCFF129CFJ, ENCFF674JSK, ENCFF807MUK 3855804297 ENCODE Processing Pipeline 5c721b1969a68e1c106886da62266b5d https://www.encodeproject.org/files/ENCFF719EHQ/@@download/ENCFF719EHQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF776UHP bam unfiltered alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 100 ENCFF077SBC, ENCFF706WJQ, ENCFF807MUK 3916472942 ENCODE Processing Pipeline 1392d368a10d683c1b271d14659d9c97 https://www.encodeproject.org/files/ENCFF776UHP/@@download/ENCFF776UHP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF077SBC fastq reads ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF706WJQ 1859776200 Michael Snyder, Stanford 4c6bbed0639c71c5781ac209e1554575 SRA:SRR5111506 https://www.encodeproject.org/files/ENCFF077SBC/@@download/ENCFF077SBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF969JRS/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF674JSK fastq reads ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 2 ENCFF129CFJ 1868779198 Michael Snyder, Stanford f0bda919735be3ad0f271fe63fe1f22c SRA:SRR5111507 https://www.encodeproject.org/files/ENCFF674JSK/@@download/ENCFF674JSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF969JRS/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF706WJQ fastq reads ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF077SBC 1793095692 Michael Snyder, Stanford e78b26f7071d8af509deb12e51d03705 SRA:SRR5111506 https://www.encodeproject.org/files/ENCFF706WJQ/@@download/ENCFF706WJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF467ZVS/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF129CFJ fastq reads ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 1 100 paired-ended 1 ENCFF674JSK 1746542075 Michael Snyder, Stanford cdb70b2abc6b74ad9ce85ec9bf4f475f SRA:SRR5111507 https://www.encodeproject.org/files/ENCFF129CFJ/@@download/ENCFF129CFJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF467ZVS/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF089EVB bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 100 ENCFF129CFJ, ENCFF674JSK, ENCFF807MUK 2758758779 ENCODE Processing Pipeline 5b36905dc18ce11492b91b608ed04d89 https://www.encodeproject.org/files/ENCFF089EVB/@@download/ENCFF089EVB.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF180RGQ bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 100 ENCFF077SBC, ENCFF706WJQ, ENCFF807MUK 2663126580 ENCODE Processing Pipeline bafd2f2a96e768e1d2398d758d45a3b9 https://www.encodeproject.org/files/ENCFF180RGQ/@@download/ENCFF180RGQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF266EKZ bigWig fold change over control ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF089EVB, ENCFF548ERH 704214107 ENCODE Processing Pipeline 5a834a57b5652e7345964ac7410417c6 https://www.encodeproject.org/files/ENCFF266EKZ/@@download/ENCFF266EKZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF571WII bigWig fold change over control ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF089EVB, ENCFF180RGQ, ENCFF548ERH 1113154118 ENCODE Processing Pipeline e0e50bd34c83d1fa4201c9dd0d30d799 https://www.encodeproject.org/files/ENCFF571WII/@@download/ENCFF571WII.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF667SBT bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF089EVB, ENCFF548ERH 5596224 ENCODE Processing Pipeline 0590079ae7fb20d34a1ed34117199a3b https://www.encodeproject.org/files/ENCFF667SBT/@@download/ENCFF667SBT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF586VDY bigBed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF316SRU 11183133 ENCODE Processing Pipeline eab9212b0b97832cce716141c190cdf9 https://www.encodeproject.org/files/ENCFF586VDY/@@download/ENCFF586VDY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF626ICM bigBed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF667SBT 11167570 ENCODE Processing Pipeline eb1bc2509bc742d7e3d4c8a21d6d7850 https://www.encodeproject.org/files/ENCFF626ICM/@@download/ENCFF626ICM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF420CNG bigWig signal p-value ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF180RGQ, ENCFF548ERH 715066419 ENCODE Processing Pipeline 1f90c9fa710bd2e649f659ac50f47268 https://www.encodeproject.org/files/ENCFF420CNG/@@download/ENCFF420CNG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF056KYY bigWig signal p-value ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF089EVB, ENCFF180RGQ, ENCFF548ERH 1031178884 ENCODE Processing Pipeline 123c090c29a7d87aec3ccc01aaa8d60c https://www.encodeproject.org/files/ENCFF056KYY/@@download/ENCFF056KYY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF814PYH bigWig fold change over control ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF180RGQ, ENCFF548ERH 730423680 ENCODE Processing Pipeline e144dc4d0dda6700009b16df76815345 https://www.encodeproject.org/files/ENCFF814PYH/@@download/ENCFF814PYH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF316SRU bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF180RGQ, ENCFF548ERH 5694368 ENCODE Processing Pipeline 846b3c258e98742cc867e2e1be70d7d5 https://www.encodeproject.org/files/ENCFF316SRU/@@download/ENCFF316SRU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF523JZB bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF089EVB, ENCFF180RGQ, ENCFF548ERH 6591925 ENCODE Processing Pipeline 6dcb369ee8c1345a052f3c533b22b014 https://www.encodeproject.org/files/ENCFF523JZB/@@download/ENCFF523JZB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF829HTV bigWig signal p-value ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF089EVB, ENCFF548ERH 657753459 ENCODE Processing Pipeline 5079b5d83664984339fc09a2022ad48e https://www.encodeproject.org/files/ENCFF829HTV/@@download/ENCFF829HTV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF042YWM bigBed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF523JZB 13287282 ENCODE Processing Pipeline 727414e160e30ae0547f647434aac81f https://www.encodeproject.org/files/ENCFF042YWM/@@download/ENCFF042YWM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF756RLM bam unfiltered alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 100 ENCFF077SBC, ENCFF643CGH, ENCFF706WJQ 3919903868 ENCODE Processing Pipeline 5f152933a0b2684db770a1a84acf8dec https://www.encodeproject.org/files/ENCFF756RLM/@@download/ENCFF756RLM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF542YLK bam unfiltered alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 100 ENCFF129CFJ, ENCFF643CGH, ENCFF674JSK 3859677181 ENCODE Processing Pipeline c55e9eea5a92e7b7d25e3b6ee7763bfc https://www.encodeproject.org/files/ENCFF542YLK/@@download/ENCFF542YLK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF810IRF bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 100 ENCFF077SBC, ENCFF643CGH, ENCFF706WJQ 2664647704 ENCODE Processing Pipeline 1f6d6b96bde4af04d6690f155d4bd255 https://www.encodeproject.org/files/ENCFF810IRF/@@download/ENCFF810IRF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF760JNE bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 100 ENCFF129CFJ, ENCFF643CGH, ENCFF674JSK 2759991045 ENCODE Processing Pipeline d2ffc44837b3caeb47f93a3e4707d0ab https://www.encodeproject.org/files/ENCFF760JNE/@@download/ENCFF760JNE.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF940OZC bigWig signal p-value ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF423TQJ, ENCFF810IRF 669489091 ENCODE Processing Pipeline b9b6f8779dca8bb02274524b7340ddae https://www.encodeproject.org/files/ENCFF940OZC/@@download/ENCFF940OZC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF462SZS bigWig signal p-value ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF423TQJ, ENCFF760JNE 736423301 ENCODE Processing Pipeline ce249809f02ccbd20e4a14ee642c9873 https://www.encodeproject.org/files/ENCFF462SZS/@@download/ENCFF462SZS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF522QXV bigWig signal p-value ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF423TQJ, ENCFF760JNE, ENCFF810IRF 1028503442 ENCODE Processing Pipeline 1217cfeb9675cc37e2d3712976b93118 https://www.encodeproject.org/files/ENCFF522QXV/@@download/ENCFF522QXV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF014HNY bigWig fold change over control ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF423TQJ, ENCFF810IRF 731145667 ENCODE Processing Pipeline 45ce496501f5abde2e5912c96c51d355 https://www.encodeproject.org/files/ENCFF014HNY/@@download/ENCFF014HNY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF346IUK bigWig fold change over control ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF423TQJ, ENCFF760JNE 713966506 ENCODE Processing Pipeline cce7bce60be1c12ecc9df4ba597bc223 https://www.encodeproject.org/files/ENCFF346IUK/@@download/ENCFF346IUK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF126WGU bigWig fold change over control ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF423TQJ, ENCFF760JNE, ENCFF810IRF 1107791717 ENCODE Processing Pipeline 813e9d5ecbf583437b19a79f7fbed999 https://www.encodeproject.org/files/ENCFF126WGU/@@download/ENCFF126WGU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF404ETV bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF423TQJ, ENCFF810IRF 5503571 ENCODE Processing Pipeline 298365b6d9ae9e26766c015673e12c97 https://www.encodeproject.org/files/ENCFF404ETV/@@download/ENCFF404ETV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF848WUG bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF423TQJ, ENCFF760JNE 5468581 ENCODE Processing Pipeline d1afbc43dbc56cc654c1007258b0e077 https://www.encodeproject.org/files/ENCFF848WUG/@@download/ENCFF848WUG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF883IIP bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF423TQJ, ENCFF760JNE, ENCFF810IRF 6422432 ENCODE Processing Pipeline 6388f49d3f21ebe872522425e07c00df https://www.encodeproject.org/files/ENCFF883IIP/@@download/ENCFF883IIP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF623IYQ bigBed narrowPeak conservative idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF007LBS 205812 ENCODE Processing Pipeline 8a9db4e6e8edc573a45c7ab8fcb8ddc1 https://www.encodeproject.org/files/ENCFF623IYQ/@@download/ENCFF623IYQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF944IUY bigBed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF404ETV 11159993 ENCODE Processing Pipeline 8273390e97563677384f3da6e5051715 https://www.encodeproject.org/files/ENCFF944IUY/@@download/ENCFF944IUY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF031WBV bigBed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF883IIP 13297265 ENCODE Processing Pipeline a0732b073ce627237fa4ba518118fcd5 https://www.encodeproject.org/files/ENCFF031WBV/@@download/ENCFF031WBV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF546WNT bigBed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF848WUG 11152204 ENCODE Processing Pipeline be5a970b56a05fa8b76c44df1fd05ffd https://www.encodeproject.org/files/ENCFF546WNT/@@download/ENCFF546WNT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF007LBS bed narrowPeak conservative idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF404ETV, ENCFF419RSJ, ENCFF848WUG, ENCFF883IIP 77349 ENCODE Processing Pipeline fc286d16abbb2ece5f19f58026a21c6e https://www.encodeproject.org/files/ENCFF007LBS/@@download/ENCFF007LBS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF952MVU bed narrowPeak optimal idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF404ETV, ENCFF419RSJ, ENCFF848WUG, ENCFF883IIP 101636 ENCODE Processing Pipeline 5f109587b86a22367553b0cbbf888dc2 https://www.encodeproject.org/files/ENCFF952MVU/@@download/ENCFF952MVU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF240OUC bigBed narrowPeak optimal idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF952MVU 242583 ENCODE Processing Pipeline 44d88c38143a5c2a27a187a39cad1d3d https://www.encodeproject.org/files/ENCFF240OUC/@@download/ENCFF240OUC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF018SRT bed narrowPeak conservative idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF316SRU, ENCFF523JZB, ENCFF667SBT 63131 ENCODE Processing Pipeline ae730decaca2abf01e955eb963be0284 https://www.encodeproject.org/files/ENCFF018SRT/@@download/ENCFF018SRT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF310EFP bigBed narrowPeak conservative idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF018SRT 153546 ENCODE Processing Pipeline 8dceb243f18b348a68a122f786a569c6 https://www.encodeproject.org/files/ENCFF310EFP/@@download/ENCFF310EFP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF009DUY bed narrowPeak optimal idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF001TDO, ENCFF316SRU, ENCFF523JZB, ENCFF667SBT 81569 ENCODE Processing Pipeline 5ec5b91ac03669cedec82fbe43737f45 https://www.encodeproject.org/files/ENCFF009DUY/@@download/ENCFF009DUY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF089MRG bigBed narrowPeak optimal idr thresholded peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1, 2 ENCFF009DUY 177677 ENCODE Processing Pipeline 60127124dbd157ff21b73f563c911a02 https://www.encodeproject.org/files/ENCFF089MRG/@@download/ENCFF089MRG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF293QLJ fastq reads ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF658VPO 3113131897 Michael Snyder, Stanford c0fc8739c6ce7762debd407b3f228939 SRA:SRR5112431 https://www.encodeproject.org/files/ENCFF293QLJ/@@download/ENCFF293QLJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF849AAG fastq reads ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF549LFN 2959515372 Michael Snyder, Stanford 022b473ee9e6b176b5aa71a76cf3931d SRA:SRR5112432 https://www.encodeproject.org/files/ENCFF849AAG/@@download/ENCFF849AAG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF658VPO fastq reads ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF293QLJ 3071076393 Michael Snyder, Stanford 3afe8194239bcd90822db6f735e24748 SRA:SRR5112431 https://www.encodeproject.org/files/ENCFF658VPO/@@download/ENCFF658VPO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF549LFN fastq reads ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF849AAG 3012099120 Michael Snyder, Stanford 7746b198c73a0f152cfb03e00327f52f SRA:SRR5112432 https://www.encodeproject.org/files/ENCFF549LFN/@@download/ENCFF549LFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF658TTK bam unfiltered alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF549LFN, ENCFF807MUK, ENCFF849AAG 6565082656 ENCODE Processing Pipeline 547b7514d13ac1f0a4aa4c4076486370 https://www.encodeproject.org/files/ENCFF658TTK/@@download/ENCFF658TTK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF842OFT bam unfiltered alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF293QLJ, ENCFF658VPO, ENCFF807MUK 6791022756 ENCODE Processing Pipeline a60c7666ec2eccb1e02fd43117fe18ee https://www.encodeproject.org/files/ENCFF842OFT/@@download/ENCFF842OFT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF472DFD bam unfiltered alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF549LFN, ENCFF643CGH, ENCFF849AAG 6572031532 ENCODE Processing Pipeline ebdf4a6ee7bf9da353bba6278fb5f588 https://www.encodeproject.org/files/ENCFF472DFD/@@download/ENCFF472DFD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF654RNE bam unfiltered alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF293QLJ, ENCFF643CGH, ENCFF658VPO 6797769507 ENCODE Processing Pipeline b69f634cf70df8a3be52bfcdf31067d8 https://www.encodeproject.org/files/ENCFF654RNE/@@download/ENCFF654RNE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF599UMV bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF293QLJ, ENCFF658VPO, ENCFF807MUK 5834440865 ENCODE Processing Pipeline 5de9eb2ee930280d95ff9451daa01c1e https://www.encodeproject.org/files/ENCFF599UMV/@@download/ENCFF599UMV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF892HUN bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF293QLJ, ENCFF643CGH, ENCFF658VPO 5837314108 ENCODE Processing Pipeline 227a114df97c1662fb270847824f3ae1 https://www.encodeproject.org/files/ENCFF892HUN/@@download/ENCFF892HUN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF193RNU bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF549LFN, ENCFF643CGH, ENCFF849AAG 5654014240 ENCODE Processing Pipeline c7bf4b21bbc4e6996eada3338176b905 https://www.encodeproject.org/files/ENCFF193RNU/@@download/ENCFF193RNU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF555IYB bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF549LFN, ENCFF807MUK, ENCFF849AAG 5651531293 ENCODE Processing Pipeline b26b3c3596328e46de0e73d247dd33d5 https://www.encodeproject.org/files/ENCFF555IYB/@@download/ENCFF555IYB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF580KMH bigWig signal p-value ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF555IYB 1553600964 ENCODE Processing Pipeline 671681b28f640b902ab2e194cd09ea62 https://www.encodeproject.org/files/ENCFF580KMH/@@download/ENCFF580KMH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF188OLY bigWig signal p-value ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF599UMV 1432447567 ENCODE Processing Pipeline badbe6aebd3545d3f7f9cd378c5b95fb https://www.encodeproject.org/files/ENCFF188OLY/@@download/ENCFF188OLY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF733PPR bigWig signal p-value ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF555IYB, ENCFF599UMV 1951261194 ENCODE Processing Pipeline ed014315a45cfeef0c7f66ae28d5cc2f https://www.encodeproject.org/files/ENCFF733PPR/@@download/ENCFF733PPR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF253ETW bigWig fold change over control ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF555IYB 1519755804 ENCODE Processing Pipeline 4334c857e749c2a85a2725804fa79287 https://www.encodeproject.org/files/ENCFF253ETW/@@download/ENCFF253ETW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF583RRV bigWig fold change over control ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF599UMV 1512222434 ENCODE Processing Pipeline db1ecc845a28b825738301f9e5542570 https://www.encodeproject.org/files/ENCFF583RRV/@@download/ENCFF583RRV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF420XUJ bigWig fold change over control ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF555IYB, ENCFF599UMV 2085847356 ENCODE Processing Pipeline b8692d4a87703e1cdedd4cf25c81d526 https://www.encodeproject.org/files/ENCFF420XUJ/@@download/ENCFF420XUJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF551UAP bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF555IYB 6767492 ENCODE Processing Pipeline f7a2ab098de8a1d7711ee5bb454a241b https://www.encodeproject.org/files/ENCFF551UAP/@@download/ENCFF551UAP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF826WVJ bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF599UMV 6750753 ENCODE Processing Pipeline 9162c45e66377772f08fd31e22498ec8 https://www.encodeproject.org/files/ENCFF826WVJ/@@download/ENCFF826WVJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF150EKW bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF555IYB, ENCFF599UMV 7382095 ENCODE Processing Pipeline 6c485c14565212705854f730da3cc514 https://www.encodeproject.org/files/ENCFF150EKW/@@download/ENCFF150EKW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF073JCD bigBed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF551UAP 11288135 ENCODE Processing Pipeline 5ee9e7bcddd99f18fc0136c950f0b1e1 https://www.encodeproject.org/files/ENCFF073JCD/@@download/ENCFF073JCD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF529SGI bigBed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF150EKW 11390310 ENCODE Processing Pipeline 51018525e5c3f064e40d04c5cb6bf40c https://www.encodeproject.org/files/ENCFF529SGI/@@download/ENCFF529SGI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF575KQB bigBed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF826WVJ 11344731 ENCODE Processing Pipeline b9ad3c5e602695d6e51c7a0da249f7e1 https://www.encodeproject.org/files/ENCFF575KQB/@@download/ENCFF575KQB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF264QYX bigBed narrowPeak conservative idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF753DVQ 280188 ENCODE Processing Pipeline 5d472d5db9acedb915ba39cd793b88e1 https://www.encodeproject.org/files/ENCFF264QYX/@@download/ENCFF264QYX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF753DVQ bed narrowPeak conservative idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF150EKW, ENCFF551UAP, ENCFF826WVJ 133965 ENCODE Processing Pipeline 2877da9c33dff1351b56cb1b2efb125a https://www.encodeproject.org/files/ENCFF753DVQ/@@download/ENCFF753DVQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF787RHQ bed narrowPeak optimal idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF150EKW, ENCFF551UAP, ENCFF826WVJ 141111 ENCODE Processing Pipeline 00ee1576a59dadb9b802c10fc032d407 https://www.encodeproject.org/files/ENCFF787RHQ/@@download/ENCFF787RHQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF925CHV bigBed narrowPeak optimal idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF787RHQ 290549 ENCODE Processing Pipeline 5fe23edf408dd2d6a4200dbacb690e70 https://www.encodeproject.org/files/ENCFF925CHV/@@download/ENCFF925CHV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF795TPL bigWig signal p-value ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193RNU 1553700426 ENCODE Processing Pipeline 6a0ac5c07221d53361ffd680d2d85f68 https://www.encodeproject.org/files/ENCFF795TPL/@@download/ENCFF795TPL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF594HEA bigWig signal p-value ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892HUN 1372095005 ENCODE Processing Pipeline 0520d775ffceb4ec5761a969ae956a7d https://www.encodeproject.org/files/ENCFF594HEA/@@download/ENCFF594HEA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF284KVI bigWig signal p-value ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193RNU, ENCFF892HUN 1990193353 ENCODE Processing Pipeline 02aea8f0f351fc511e45f35947729a7b https://www.encodeproject.org/files/ENCFF284KVI/@@download/ENCFF284KVI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF823IAN bigWig fold change over control ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193RNU 1520434926 ENCODE Processing Pipeline d1aa9535c51d1bcf03d49d23f34b4472 https://www.encodeproject.org/files/ENCFF823IAN/@@download/ENCFF823IAN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF665SDR bigWig fold change over control ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892HUN 1513554610 ENCODE Processing Pipeline c5d0d05451bba2ac386684d8439e89ad https://www.encodeproject.org/files/ENCFF665SDR/@@download/ENCFF665SDR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF793OOX bigWig fold change over control ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193RNU, ENCFF892HUN 2128986682 ENCODE Processing Pipeline fd38bb2b5ca1eb89145b66c0324b03bd https://www.encodeproject.org/files/ENCFF793OOX/@@download/ENCFF793OOX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF386DWL bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193RNU 6631762 ENCODE Processing Pipeline 5aad3e99b5d4913e7b474925ddb1c34e https://www.encodeproject.org/files/ENCFF386DWL/@@download/ENCFF386DWL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF757VCU bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF892HUN 6625118 ENCODE Processing Pipeline 67152c7c85eafabcf3377ec6125e0a45 https://www.encodeproject.org/files/ENCFF757VCU/@@download/ENCFF757VCU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF365RWO bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193RNU, ENCFF892HUN 7347780 ENCODE Processing Pipeline 990b42dde389c6ed5c16b6ce5b173720 https://www.encodeproject.org/files/ENCFF365RWO/@@download/ENCFF365RWO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF700TGF bigBed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF386DWL 11291313 ENCODE Processing Pipeline 69d6e2d8b80176b99a247bb07957de30 https://www.encodeproject.org/files/ENCFF700TGF/@@download/ENCFF700TGF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF977TWQ bigBed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF365RWO 11403398 ENCODE Processing Pipeline f16e204f0de6169125bf0e3b46cf8a27 https://www.encodeproject.org/files/ENCFF977TWQ/@@download/ENCFF977TWQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF329GOR bigBed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF757VCU 11346822 ENCODE Processing Pipeline eafbf4813afbc09e448382604dc04ae9 https://www.encodeproject.org/files/ENCFF329GOR/@@download/ENCFF329GOR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF376PUF bigBed narrowPeak conservative idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF845WOM 281294 ENCODE Processing Pipeline 7a1cd48cfbb4a163baf9aba923c41915 https://www.encodeproject.org/files/ENCFF376PUF/@@download/ENCFF376PUF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF845WOM bed narrowPeak conservative idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF365RWO, ENCFF386DWL, ENCFF419RSJ, ENCFF757VCU 133571 ENCODE Processing Pipeline f6b302fd2e564dbd5b0554844317abbf https://www.encodeproject.org/files/ENCFF845WOM/@@download/ENCFF845WOM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF955EQI bed narrowPeak optimal idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF365RWO, ENCFF386DWL, ENCFF419RSJ, ENCFF757VCU 139027 ENCODE Processing Pipeline a9bad3118392e8de174c2ae70a590898 https://www.encodeproject.org/files/ENCFF955EQI/@@download/ENCFF955EQI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF636VTC bigBed narrowPeak optimal idr thresholded peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF955EQI 288408 ENCODE Processing Pipeline e1539764ede7dbe6ada6b861a489a812 https://www.encodeproject.org/files/ENCFF636VTC/@@download/ENCFF636VTC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF311MID fastq reads ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF258FCV 3360239817 Michael Snyder, Stanford 0a758cacaa8409f54755425fda74ad96 SRA:SRR6213685 https://www.encodeproject.org/files/ENCFF311MID/@@download/ENCFF311MID.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF258FCV fastq reads ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF311MID 3406505041 Michael Snyder, Stanford c28bbe5dcf4ba447688458f3b4e7fcea SRA:SRR6213685 https://www.encodeproject.org/files/ENCFF258FCV/@@download/ENCFF258FCV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF783NMT fastq reads ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF767STU 2854408021 Michael Snyder, Stanford eae929015d2a6f51b9a7718564ef5b95 SRA:SRR6213686 https://www.encodeproject.org/files/ENCFF783NMT/@@download/ENCFF783NMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF767STU fastq reads ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF783NMT 2830715349 Michael Snyder, Stanford c3e03c4d00d0ac87d20b151b89cf486e SRA:SRR6213686 https://www.encodeproject.org/files/ENCFF767STU/@@download/ENCFF767STU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF056PRJ bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF767STU, ENCFF783NMT, ENCFF807MUK 4965394543 ENCODE Processing Pipeline 774271dd22ed5cf68d48aa7b1b2bf551 https://www.encodeproject.org/files/ENCFF056PRJ/@@download/ENCFF056PRJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF980ANB bam unfiltered alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF767STU, ENCFF783NMT, ENCFF807MUK 5725203579 ENCODE Processing Pipeline 23cc396b7b492db8e63775806c3ee9a6 https://www.encodeproject.org/files/ENCFF980ANB/@@download/ENCFF980ANB.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF208LRB bam unfiltered alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF767STU, ENCFF783NMT 5734073611 ENCODE Processing Pipeline 902ff9234b610b9c5c1fbbcee9da5ea4 https://www.encodeproject.org/files/ENCFF208LRB/@@download/ENCFF208LRB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF639JVU bam unfiltered alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF258FCV, ENCFF311MID, ENCFF643CGH 7432312689 ENCODE Processing Pipeline deb61a607f32ebb79fa8531cade07cb4 https://www.encodeproject.org/files/ENCFF639JVU/@@download/ENCFF639JVU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF183KFV bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF767STU, ENCFF783NMT 4966926315 ENCODE Processing Pipeline e7699554d0d8eab205e9bd6cbe1c9889 https://www.encodeproject.org/files/ENCFF183KFV/@@download/ENCFF183KFV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF197XQY bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF258FCV, ENCFF311MID, ENCFF643CGH 6242754659 ENCODE Processing Pipeline 5c2a7d160ea209417e02ec821063159d https://www.encodeproject.org/files/ENCFF197XQY/@@download/ENCFF197XQY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF738NDC bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF258FCV, ENCFF311MID, ENCFF807MUK 6238848027 ENCODE Processing Pipeline 409a81e081d5030207b1e372b5d23906 https://www.encodeproject.org/files/ENCFF738NDC/@@download/ENCFF738NDC.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF904SHT bam unfiltered alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF258FCV, ENCFF311MID, ENCFF807MUK 7421547942 ENCODE Processing Pipeline 8b5f15445b56111f58627f9e061c56a2 https://www.encodeproject.org/files/ENCFF904SHT/@@download/ENCFF904SHT.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF799IAR bigWig signal p-value ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF056PRJ 1416482171 ENCODE Processing Pipeline a80a7c3e5009a5912b9dc9115a186f0f https://www.encodeproject.org/files/ENCFF799IAR/@@download/ENCFF799IAR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF560EAE bigWig signal p-value ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF738NDC 1383966834 ENCODE Processing Pipeline bcf2d704b585c6685e54118ba32421d6 https://www.encodeproject.org/files/ENCFF560EAE/@@download/ENCFF560EAE.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF629JDP bigWig signal p-value ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF056PRJ, ENCFF738NDC 1990773556 ENCODE Processing Pipeline 18cff8e47aad0941b51ab27b2ac2e44d https://www.encodeproject.org/files/ENCFF629JDP/@@download/ENCFF629JDP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF993PPQ bigWig fold change over control ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF738NDC 1610189353 ENCODE Processing Pipeline bddf12334cad37ad8fa173cff5ef67ed https://www.encodeproject.org/files/ENCFF993PPQ/@@download/ENCFF993PPQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF232DHE bigWig fold change over control ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF056PRJ, ENCFF738NDC 2142011486 ENCODE Processing Pipeline bd63f84094abd0499bf575f3c837b7ad https://www.encodeproject.org/files/ENCFF232DHE/@@download/ENCFF232DHE.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF071YPJ bigWig fold change over control ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF056PRJ 1472501175 ENCODE Processing Pipeline 5b015b1e76c6825fa0d936a0f2c5504b https://www.encodeproject.org/files/ENCFF071YPJ/@@download/ENCFF071YPJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF654LZI bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF738NDC 6593209 ENCODE Processing Pipeline ce7d57fd152513231146d93702507798 https://www.encodeproject.org/files/ENCFF654LZI/@@download/ENCFF654LZI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF120KSV bigBed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF654LZI 11124316 ENCODE Processing Pipeline ecf94906ef6174b3e48e22837fb13007 https://www.encodeproject.org/files/ENCFF120KSV/@@download/ENCFF120KSV.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF097FQT bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF056PRJ 6509830 ENCODE Processing Pipeline 8059b30de21948e537429d01c40672a0 https://www.encodeproject.org/files/ENCFF097FQT/@@download/ENCFF097FQT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF139CJT bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF056PRJ, ENCFF738NDC 7244719 ENCODE Processing Pipeline 266e97e259cff055f11a1373ab37d730 https://www.encodeproject.org/files/ENCFF139CJT/@@download/ENCFF139CJT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF951BDH bigBed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF097FQT 11168255 ENCODE Processing Pipeline b8eadd71f389792b31f4e3f98131f245 https://www.encodeproject.org/files/ENCFF951BDH/@@download/ENCFF951BDH.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF407VGO bigBed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF139CJT 11320824 ENCODE Processing Pipeline d7c4ee1372c1234e6e04cd2a4f1d7dce https://www.encodeproject.org/files/ENCFF407VGO/@@download/ENCFF407VGO.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF460JBF bed narrowPeak optimal idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF097FQT, ENCFF139CJT, ENCFF654LZI 31671 ENCODE Processing Pipeline bde01fa34fe058dcb2fc0027ef30b242 https://www.encodeproject.org/files/ENCFF460JBF/@@download/ENCFF460JBF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF812VZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF460JBF 104075 ENCODE Processing Pipeline ecac829f00fafe251ec5f654e377e02d https://www.encodeproject.org/files/ENCFF812VZZ/@@download/ENCFF812VZZ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF494YTN bed narrowPeak conservative idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF097FQT, ENCFF139CJT, ENCFF654LZI 14188 ENCODE Processing Pipeline 98b26d42b195d13313d6f81dedcbed37 https://www.encodeproject.org/files/ENCFF494YTN/@@download/ENCFF494YTN.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF784GKI bigBed narrowPeak conservative idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF494YTN 75641 ENCODE Processing Pipeline 427659b951c9329db481848d65a93aab https://www.encodeproject.org/files/ENCFF784GKI/@@download/ENCFF784GKI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF378EHH bigWig signal p-value ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF197XQY 1242593052 ENCODE Processing Pipeline ae9fed64f344c27eba3df50870fd884b https://www.encodeproject.org/files/ENCFF378EHH/@@download/ENCFF378EHH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF061LGG bigWig signal p-value ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF183KFV 1399215755 ENCODE Processing Pipeline 22bc2a6bab6021dfda43da133e7a3f3e https://www.encodeproject.org/files/ENCFF061LGG/@@download/ENCFF061LGG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF256IQD bigWig signal p-value ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF183KFV, ENCFF197XQY 1983962884 ENCODE Processing Pipeline 9e59a372d5dc3f0f3df33306c60d82e4 https://www.encodeproject.org/files/ENCFF256IQD/@@download/ENCFF256IQD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF494GBC bigWig fold change over control ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF197XQY 1611654373 ENCODE Processing Pipeline 135a7a6abe974ac70222ec050b913d58 https://www.encodeproject.org/files/ENCFF494GBC/@@download/ENCFF494GBC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF840YHU bigWig fold change over control ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF183KFV 1489852519 ENCODE Processing Pipeline d894c68e7f6ea31eba42beacf53eeb23 https://www.encodeproject.org/files/ENCFF840YHU/@@download/ENCFF840YHU.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF385ACQ bigWig fold change over control ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF183KFV, ENCFF197XQY 2134710842 ENCODE Processing Pipeline 21020c4b918ea27e7fc6cfbc06784915 https://www.encodeproject.org/files/ENCFF385ACQ/@@download/ENCFF385ACQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF012VOZ bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF197XQY 6561267 ENCODE Processing Pipeline be9b2066072af56b64e47f615aa3d83f https://www.encodeproject.org/files/ENCFF012VOZ/@@download/ENCFF012VOZ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF986KJV bigBed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF894EDO 11330915 ENCODE Processing Pipeline b04cb5e36602ee4dbd26c8263b275ff4 https://www.encodeproject.org/files/ENCFF986KJV/@@download/ENCFF986KJV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF597SMQ bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF183KFV 6509839 ENCODE Processing Pipeline 85bb3033a151f3b0484e62a5ddd2b9d1 https://www.encodeproject.org/files/ENCFF597SMQ/@@download/ENCFF597SMQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF894EDO bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF183KFV, ENCFF197XQY 7248850 ENCODE Processing Pipeline 9185b2a5a5cc5072e6e4ea1bebeb6323 https://www.encodeproject.org/files/ENCFF894EDO/@@download/ENCFF894EDO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF401ZLR bigBed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF012VOZ 11139351 ENCODE Processing Pipeline c203d8a3c96d10f9a2d1581d1e6bb825 https://www.encodeproject.org/files/ENCFF401ZLR/@@download/ENCFF401ZLR.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF060RLJ bigBed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF597SMQ 11180535 ENCODE Processing Pipeline 93a8bcc81ea3b889bf336e39a48a6d97 https://www.encodeproject.org/files/ENCFF060RLJ/@@download/ENCFF060RLJ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF655PMG bed narrowPeak optimal idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF012VOZ, ENCFF419RSJ, ENCFF597SMQ, ENCFF894EDO 30994 ENCODE Processing Pipeline 67ddd8408512126948e7637605141495 https://www.encodeproject.org/files/ENCFF655PMG/@@download/ENCFF655PMG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF778ZQK bed narrowPeak conservative idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF012VOZ, ENCFF419RSJ, ENCFF597SMQ, ENCFF894EDO 14441 ENCODE Processing Pipeline 2a9958904996fb89f0d9ee8747c83a75 https://www.encodeproject.org/files/ENCFF778ZQK/@@download/ENCFF778ZQK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF462ZKG bigBed narrowPeak conservative idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF778ZQK 76935 ENCODE Processing Pipeline 8391ddb6148db65661bad22e852a514b https://www.encodeproject.org/files/ENCFF462ZKG/@@download/ENCFF462ZKG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF642WSG bigBed narrowPeak optimal idr thresholded peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF655PMG 103922 ENCODE Processing Pipeline a0ffc930b34bb9453fbbfb1019c4688e https://www.encodeproject.org/files/ENCFF642WSG/@@download/ENCFF642WSG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF527YMQ fastq reads ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 1 ENCFF387TMU 3098299325 Michael Snyder, Stanford d73c384b7e839b75c929f162880c6e15 SRA:SRR5112137 https://www.encodeproject.org/files/ENCFF527YMQ/@@download/ENCFF527YMQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF387TMU fastq reads ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 2 ENCFF527YMQ 3286112142 Michael Snyder, Stanford 3ac9aa75fd653c30e7c39ecf7c002e49 SRA:SRR5112137 https://www.encodeproject.org/files/ENCFF387TMU/@@download/ENCFF387TMU.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF171ZAE fastq reads ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 1 ENCFF111KWK 3158033743 Michael Snyder, Stanford e661ec15a75aee43a89be2426f45e4ce SRA:SRR5112136 https://www.encodeproject.org/files/ENCFF171ZAE/@@download/ENCFF171ZAE.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF111KWK fastq reads ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 2 ENCFF171ZAE 3383293584 Michael Snyder, Stanford b7833d1a3a2d63085e29b191ce971ede SRA:SRR5112136 https://www.encodeproject.org/files/ENCFF111KWK/@@download/ENCFF111KWK.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF329AIY bam unfiltered alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 100 ENCFF387TMU, ENCFF527YMQ, ENCFF807MUK 6174845424 ENCODE Processing Pipeline 0b79bd81b5e10c6409dd03ceb7e153aa https://www.encodeproject.org/files/ENCFF329AIY/@@download/ENCFF329AIY.bam hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF629EGN bam unfiltered alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 100 ENCFF111KWK, ENCFF171ZAE, ENCFF807MUK 6197068636 ENCODE Processing Pipeline e183d5ca7bfae66c847e0b0f98f695ba https://www.encodeproject.org/files/ENCFF629EGN/@@download/ENCFF629EGN.bam hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF554EGF bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 100 ENCFF111KWK, ENCFF171ZAE, ENCFF807MUK 4446889659 ENCODE Processing Pipeline 1038170add8eb66fc5a387326afaf71d https://www.encodeproject.org/files/ENCFF554EGF/@@download/ENCFF554EGF.bam hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF095FXN bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 100 ENCFF387TMU, ENCFF527YMQ, ENCFF807MUK 4745171382 ENCODE Processing Pipeline 09308ae05bec2cc08bb7711faee89759 https://www.encodeproject.org/files/ENCFF095FXN/@@download/ENCFF095FXN.bam hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF023TRG bam unfiltered alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 100 ENCFF387TMU, ENCFF527YMQ, ENCFF643CGH 6184581051 ENCODE Processing Pipeline 7e62e33204c4fb37b221477262f2bc24 https://www.encodeproject.org/files/ENCFF023TRG/@@download/ENCFF023TRG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF672XCP bam unfiltered alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 100 ENCFF111KWK, ENCFF171ZAE, ENCFF643CGH 6205008215 ENCODE Processing Pipeline 486a2e9e35451df70101f4b381a5b0d8 https://www.encodeproject.org/files/ENCFF672XCP/@@download/ENCFF672XCP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF360GUG bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 100 ENCFF387TMU, ENCFF527YMQ, ENCFF643CGH 4751154044 ENCODE Processing Pipeline 5bcd09adf47666cc341dc0a5ed8c8771 https://www.encodeproject.org/files/ENCFF360GUG/@@download/ENCFF360GUG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF247CVJ bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 100 ENCFF111KWK, ENCFF171ZAE, ENCFF643CGH 4451768357 ENCODE Processing Pipeline 52a7713efa867de62368cc4e6f350055 https://www.encodeproject.org/files/ENCFF247CVJ/@@download/ENCFF247CVJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF709DXP bigWig signal p-value ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF247CVJ, ENCFF360GUG, ENCFF705ARK, ENCFF802NAW 2416146878 ENCODE Processing Pipeline b1c1a68335d9de4bedf9d67660668e2c https://www.encodeproject.org/files/ENCFF709DXP/@@download/ENCFF709DXP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF873GFG bigWig signal p-value ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF360GUG, ENCFF705ARK, ENCFF802NAW 1751699614 ENCODE Processing Pipeline 7284b7989b8a3c200e026be5904ef647 https://www.encodeproject.org/files/ENCFF873GFG/@@download/ENCFF873GFG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF473HEM bigWig fold change over control ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF360GUG, ENCFF705ARK, ENCFF802NAW 1938789322 ENCODE Processing Pipeline 30b3ada8e9e05a680c3d51d59f3386d3 https://www.encodeproject.org/files/ENCFF473HEM/@@download/ENCFF473HEM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF286KSW bigWig signal p-value ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF247CVJ, ENCFF705ARK, ENCFF802NAW 1792370376 ENCODE Processing Pipeline 761a5416ce1bc65709f1f719c2b2c28b https://www.encodeproject.org/files/ENCFF286KSW/@@download/ENCFF286KSW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF844BTF bigWig fold change over control ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF247CVJ, ENCFF705ARK, ENCFF802NAW 1891921891 ENCODE Processing Pipeline f25c22233d2efe2677d774b35c8aca57 https://www.encodeproject.org/files/ENCFF844BTF/@@download/ENCFF844BTF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF110SAT bigWig fold change over control ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF247CVJ, ENCFF360GUG, ENCFF705ARK, ENCFF802NAW 2464255765 ENCODE Processing Pipeline 3b771f1b70d9e6a89614653305152725 https://www.encodeproject.org/files/ENCFF110SAT/@@download/ENCFF110SAT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF232LTM bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF247CVJ, ENCFF705ARK, ENCFF802NAW 6758941 ENCODE Processing Pipeline e838dee29c8c64adf68bb7bddd5611a6 https://www.encodeproject.org/files/ENCFF232LTM/@@download/ENCFF232LTM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF021MMP bigBed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF678DPD 11179389 ENCODE Processing Pipeline 371ebe1431aaab8b179f5fceb7df3815 https://www.encodeproject.org/files/ENCFF021MMP/@@download/ENCFF021MMP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF918QPM bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF247CVJ, ENCFF360GUG, ENCFF705ARK, ENCFF802NAW 7279863 ENCODE Processing Pipeline 989b84c78a9cfd8cce78cd1fffac4b99 https://www.encodeproject.org/files/ENCFF918QPM/@@download/ENCFF918QPM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF678DPD bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF360GUG, ENCFF705ARK, ENCFF802NAW 6703495 ENCODE Processing Pipeline 36497c9952df02edf659beae1a6c1955 https://www.encodeproject.org/files/ENCFF678DPD/@@download/ENCFF678DPD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF710DSL bigBed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF232LTM 11191164 ENCODE Processing Pipeline 7b20449e7ac5c986762cd4ac602035c7 https://www.encodeproject.org/files/ENCFF710DSL/@@download/ENCFF710DSL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF463VHE bigBed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF918QPM 11226729 ENCODE Processing Pipeline e58befc33ad3d7e2d9a640c7b1aa8c6c https://www.encodeproject.org/files/ENCFF463VHE/@@download/ENCFF463VHE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF222HRX bigBed narrowPeak conservative idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF810XKE 80186 ENCODE Processing Pipeline 40559fc5bc04dec44ea709462363b02b https://www.encodeproject.org/files/ENCFF222HRX/@@download/ENCFF222HRX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF810XKE bed narrowPeak conservative idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF232LTM, ENCFF419RSJ, ENCFF678DPD, ENCFF918QPM 13807 ENCODE Processing Pipeline 2e5dd30999ae5e1c28ccd255595cd702 https://www.encodeproject.org/files/ENCFF810XKE/@@download/ENCFF810XKE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF104NYV bed narrowPeak optimal idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF232LTM, ENCFF419RSJ, ENCFF678DPD, ENCFF918QPM 21039 ENCODE Processing Pipeline 3cb533f9157d1e00a033515f4589096f https://www.encodeproject.org/files/ENCFF104NYV/@@download/ENCFF104NYV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF510LON bigBed narrowPeak optimal idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF104NYV 93035 ENCODE Processing Pipeline 6de36be2001331cddd195752ccba6844 https://www.encodeproject.org/files/ENCFF510LON/@@download/ENCFF510LON.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF752AIJ bigWig signal p-value ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF095FXN, ENCFF529BVI, ENCFF772FBN 1898063966 ENCODE Processing Pipeline a44d09a9839875619abf89e552c043b5 https://www.encodeproject.org/files/ENCFF752AIJ/@@download/ENCFF752AIJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF865MUP bigWig fold change over control ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 1859886137 ENCODE Processing Pipeline a4742945768b2cea3ff486f96b8c214d https://www.encodeproject.org/files/ENCFF865MUP/@@download/ENCFF865MUP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF989HZY bigWig signal p-value ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 1675758241 ENCODE Processing Pipeline 25499ff4ca179fd5fcefc0e012ec593c https://www.encodeproject.org/files/ENCFF989HZY/@@download/ENCFF989HZY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF375NLE bigWig fold change over control ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF095FXN, ENCFF529BVI, ENCFF772FBN 1905098664 ENCODE Processing Pipeline ca844506010b77a0f233d5015d8ea910 https://www.encodeproject.org/files/ENCFF375NLE/@@download/ENCFF375NLE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF207ZRW bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF095FXN, ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 7261241 ENCODE Processing Pipeline 0d700af6effc140caf4f46fc33e9576d https://www.encodeproject.org/files/ENCFF207ZRW/@@download/ENCFF207ZRW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF228RDW bigBed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF562GBY 11156585 ENCODE Processing Pipeline 891d4a452dc938e3d827dfe019438be5 https://www.encodeproject.org/files/ENCFF228RDW/@@download/ENCFF228RDW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF572ELA bigBed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF649FUD 11159656 ENCODE Processing Pipeline 345afc5bd6744202a489e74d3b235d12 https://www.encodeproject.org/files/ENCFF572ELA/@@download/ENCFF572ELA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF752VJQ bigBed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF207ZRW 11192051 ENCODE Processing Pipeline 7f932af8ab2e0134627a114cc9fa7f5f https://www.encodeproject.org/files/ENCFF752VJQ/@@download/ENCFF752VJQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF428OLL bed narrowPeak conservative idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF207ZRW, ENCFF562GBY, ENCFF649FUD 13154 ENCODE Processing Pipeline 589289104f7fe11cf31c9678f7d008d4 https://www.encodeproject.org/files/ENCFF428OLL/@@download/ENCFF428OLL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF785FBD bed narrowPeak optimal idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF207ZRW, ENCFF562GBY, ENCFF649FUD 20912 ENCODE Processing Pipeline 000680229ad85adad7aba34745d43dd7 https://www.encodeproject.org/files/ENCFF785FBD/@@download/ENCFF785FBD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF003FUN bigWig signal p-value ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF095FXN, ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 2396678842 ENCODE Processing Pipeline a6bb6702113023cddf8147f5de5c883d https://www.encodeproject.org/files/ENCFF003FUN/@@download/ENCFF003FUN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF562GBY bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF095FXN, ENCFF529BVI, ENCFF772FBN 6697088 ENCODE Processing Pipeline 6f7fb53ffc5ac5a571fd5178be77b46d https://www.encodeproject.org/files/ENCFF562GBY/@@download/ENCFF562GBY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF333UID bigBed narrowPeak optimal idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF785FBD 90434 ENCODE Processing Pipeline e9a6eef3a3581664108fd4ab020a0b1c https://www.encodeproject.org/files/ENCFF333UID/@@download/ENCFF333UID.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF484IXS bigWig fold change over control ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF095FXN, ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 2452492868 ENCODE Processing Pipeline 72f42e29e964610f0b2e545e12781a8e https://www.encodeproject.org/files/ENCFF484IXS/@@download/ENCFF484IXS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF649FUD bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 6769208 ENCODE Processing Pipeline 31feb33dee426db3890aca3cb4be62c0 https://www.encodeproject.org/files/ENCFF649FUD/@@download/ENCFF649FUD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF766HFZ bigBed narrowPeak conservative idr thresholded peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF428OLL 77212 ENCODE Processing Pipeline 77ffa4c308a035ea96fd7002f4f0d1c0 https://www.encodeproject.org/files/ENCFF766HFZ/@@download/ENCFF766HFZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF262KLX fastq reads ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF186HCK 2749264041 Michael Snyder, Stanford f38e9893fe19333c63cee55c2dc3f772 SRA:SRR5111593 https://www.encodeproject.org/files/ENCFF262KLX/@@download/ENCFF262KLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF280MIU fastq reads ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF255PXN 2851618643 Michael Snyder, Stanford a724c0c7095797314f18f689ac797d09 SRA:SRR5111592 https://www.encodeproject.org/files/ENCFF280MIU/@@download/ENCFF280MIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF255PXN fastq reads ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF280MIU 2872477859 Michael Snyder, Stanford 875994a14d59b4251d84e57db0c33908 SRA:SRR5111592 https://www.encodeproject.org/files/ENCFF255PXN/@@download/ENCFF255PXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF186HCK fastq reads ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF262KLX 2774314307 Michael Snyder, Stanford 4e90065d3490a3369c86758a35e5f40d SRA:SRR5111593 https://www.encodeproject.org/files/ENCFF186HCK/@@download/ENCFF186HCK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF982UDS bam unfiltered alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF255PXN, ENCFF280MIU, ENCFF807MUK 6312694440 ENCODE Processing Pipeline 046fe1d187abe5901c3434fb02683202 https://www.encodeproject.org/files/ENCFF982UDS/@@download/ENCFF982UDS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF522UGR bam unfiltered alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF255PXN, ENCFF280MIU, ENCFF643CGH 6321241097 ENCODE Processing Pipeline 1016eaeafe19214125fa89a13ffeaa2c https://www.encodeproject.org/files/ENCFF522UGR/@@download/ENCFF522UGR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF591RNC bam unfiltered alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF186HCK, ENCFF262KLX, ENCFF643CGH 6116856063 ENCODE Processing Pipeline 5f4a2d0e99954f7ebc925c64ac409487 https://www.encodeproject.org/files/ENCFF591RNC/@@download/ENCFF591RNC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF416JDH bam unfiltered alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF186HCK, ENCFF262KLX, ENCFF807MUK 6108817627 ENCODE Processing Pipeline c44d3c9d142000efe483fcd58d99e590 https://www.encodeproject.org/files/ENCFF416JDH/@@download/ENCFF416JDH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF036LQK bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF255PXN, ENCFF280MIU, ENCFF643CGH 5414743225 ENCODE Processing Pipeline e7d80b829a4f980d55b42a85cf641968 https://www.encodeproject.org/files/ENCFF036LQK/@@download/ENCFF036LQK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF320JZH bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF186HCK, ENCFF262KLX, ENCFF807MUK 5200423924 ENCODE Processing Pipeline 9690d17cd4cce90755e25d29ad38e09a https://www.encodeproject.org/files/ENCFF320JZH/@@download/ENCFF320JZH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF882ISN bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF255PXN, ENCFF280MIU, ENCFF807MUK 5410190987 ENCODE Processing Pipeline 118ba452751bbc3c3ebb0cbc7875e0b5 https://www.encodeproject.org/files/ENCFF882ISN/@@download/ENCFF882ISN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF252BCB bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF186HCK, ENCFF262KLX, ENCFF643CGH 5205021423 ENCODE Processing Pipeline 2a49dd67bc443664cb881c843da7d1de https://www.encodeproject.org/files/ENCFF252BCB/@@download/ENCFF252BCB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF891GRQ bigWig signal p-value ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF320JZH 1227286453 ENCODE Processing Pipeline df43497137c6adb60c42ac2ecaa15b63 https://www.encodeproject.org/files/ENCFF891GRQ/@@download/ENCFF891GRQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF646SOX bigWig signal p-value ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF882ISN 1430866579 ENCODE Processing Pipeline 50dbfe6d2e47eebc48e01686f3f1d2fa https://www.encodeproject.org/files/ENCFF646SOX/@@download/ENCFF646SOX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF518PZK bigWig signal p-value ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF320JZH, ENCFF882ISN 1964035834 ENCODE Processing Pipeline e4cabd7ea4b3047535964eccda30ef4e https://www.encodeproject.org/files/ENCFF518PZK/@@download/ENCFF518PZK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF640LDV bigWig fold change over control ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF320JZH 1475360467 ENCODE Processing Pipeline 05b4dec0d38e9802eddc6c730d2f3129 https://www.encodeproject.org/files/ENCFF640LDV/@@download/ENCFF640LDV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF099GXL bigWig fold change over control ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF882ISN 1476147064 ENCODE Processing Pipeline 3afe4d38f6094d99440b66b1f04957ec https://www.encodeproject.org/files/ENCFF099GXL/@@download/ENCFF099GXL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF698FRZ bigWig fold change over control ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF320JZH, ENCFF882ISN 2028913454 ENCODE Processing Pipeline 10554a864f77621fa2180e16eb45dc67 https://www.encodeproject.org/files/ENCFF698FRZ/@@download/ENCFF698FRZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF190AMH bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF320JZH 6726328 ENCODE Processing Pipeline e5fd67a904e8d3ccfbdd1aa77cb8b6f0 https://www.encodeproject.org/files/ENCFF190AMH/@@download/ENCFF190AMH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF617GWE bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF882ISN 6828368 ENCODE Processing Pipeline 8abe64ecb226c1787ed5a0fef81f4dc2 https://www.encodeproject.org/files/ENCFF617GWE/@@download/ENCFF617GWE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF805JPF bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF320JZH, ENCFF882ISN 7206874 ENCODE Processing Pipeline 1677b4ac2bd1f7141592772a813dec40 https://www.encodeproject.org/files/ENCFF805JPF/@@download/ENCFF805JPF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF647CXA bigBed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF190AMH 11308851 ENCODE Processing Pipeline 3338fd3366670853e87d9736c98d54b1 https://www.encodeproject.org/files/ENCFF647CXA/@@download/ENCFF647CXA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF455GPY bigBed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF617GWE 11305475 ENCODE Processing Pipeline 77c85e66aa59590c54a553966b5df490 https://www.encodeproject.org/files/ENCFF455GPY/@@download/ENCFF455GPY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF559TTV bigBed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF805JPF 13316894 ENCODE Processing Pipeline 1fc5781f553ebbf89feeafe25b93d22f https://www.encodeproject.org/files/ENCFF559TTV/@@download/ENCFF559TTV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF262QVD bed narrowPeak conservative idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF190AMH, ENCFF617GWE, ENCFF805JPF 168498 ENCODE Processing Pipeline f8e53445686559f65e43c0f0662c2166 https://www.encodeproject.org/files/ENCFF262QVD/@@download/ENCFF262QVD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF629SHB bed narrowPeak optimal idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF190AMH, ENCFF617GWE, ENCFF805JPF 232706 ENCODE Processing Pipeline 8893c0a0bf71bfa980c405b60e70ebfb https://www.encodeproject.org/files/ENCFF629SHB/@@download/ENCFF629SHB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF868WEP bigBed narrowPeak conservative idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF262QVD 346053 ENCODE Processing Pipeline 1804c130d369506a5453348c878aa4b8 https://www.encodeproject.org/files/ENCFF868WEP/@@download/ENCFF868WEP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF635PFX bigBed narrowPeak optimal idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF629SHB 440714 ENCODE Processing Pipeline dcdf1a3c18461f723ee618857f6a1658 https://www.encodeproject.org/files/ENCFF635PFX/@@download/ENCFF635PFX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF845EXY bigWig signal p-value ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF252BCB 1359388860 ENCODE Processing Pipeline c90520ec8fc68c23a7441f835e3b70c1 https://www.encodeproject.org/files/ENCFF845EXY/@@download/ENCFF845EXY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF206UUK bigWig signal p-value ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF036LQK 1515702046 ENCODE Processing Pipeline 26cbd9e4294ca0ca0f6b69b490cd50d7 https://www.encodeproject.org/files/ENCFF206UUK/@@download/ENCFF206UUK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF207GMZ bigWig signal p-value ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF036LQK, ENCFF252BCB 1994496952 ENCODE Processing Pipeline 1f30c689edf6d225db090c4dfd09dc9b https://www.encodeproject.org/files/ENCFF207GMZ/@@download/ENCFF207GMZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF396BWF bigWig fold change over control ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF252BCB 1433649470 ENCODE Processing Pipeline 29030bf3a8e6d528dbd4d76ad17bdf3b https://www.encodeproject.org/files/ENCFF396BWF/@@download/ENCFF396BWF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF068MIV bigWig fold change over control ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF036LQK 1503455808 ENCODE Processing Pipeline aa8461da09165a8bfea5208d45a0aa7f https://www.encodeproject.org/files/ENCFF068MIV/@@download/ENCFF068MIV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF808ARD bigWig fold change over control ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF036LQK, ENCFF252BCB 2070719617 ENCODE Processing Pipeline 54a49ab0d8cc626a0662b7b5c8d6bc12 https://www.encodeproject.org/files/ENCFF808ARD/@@download/ENCFF808ARD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF393BVL bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF252BCB 6578340 ENCODE Processing Pipeline 9432a3b31eda4931ba33e4dd4988c792 https://www.encodeproject.org/files/ENCFF393BVL/@@download/ENCFF393BVL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF211EAB bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF036LQK, ENCFF252BCB 7183205 ENCODE Processing Pipeline 3a13f6143994a591452b2656e429743b https://www.encodeproject.org/files/ENCFF211EAB/@@download/ENCFF211EAB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF831MIX bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF036LQK 6697611 ENCODE Processing Pipeline 1314df602650a7aeb31706949cafc4fc https://www.encodeproject.org/files/ENCFF831MIX/@@download/ENCFF831MIX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF463NLJ bigBed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF393BVL 11323312 ENCODE Processing Pipeline 462e8ce9cc7718bcfcb76ccd38b56984 https://www.encodeproject.org/files/ENCFF463NLJ/@@download/ENCFF463NLJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF371KDH bigBed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF211EAB 13326777 ENCODE Processing Pipeline 5165b4b516c1ec13194e222797352be7 https://www.encodeproject.org/files/ENCFF371KDH/@@download/ENCFF371KDH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF874IWH bigBed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF831MIX 11318410 ENCODE Processing Pipeline dcf855e559f1f47cc4863e2d115752fd https://www.encodeproject.org/files/ENCFF874IWH/@@download/ENCFF874IWH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF861HYH bed narrowPeak conservative idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF211EAB, ENCFF393BVL, ENCFF419RSJ, ENCFF831MIX 169746 ENCODE Processing Pipeline 43dd74b0850e8b2813523e2e48c55df1 https://www.encodeproject.org/files/ENCFF861HYH/@@download/ENCFF861HYH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF747WBY bigBed narrowPeak conservative idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF861HYH 348800 ENCODE Processing Pipeline 5d0a4a7fb3417779b2c4ed24d15c9bb4 https://www.encodeproject.org/files/ENCFF747WBY/@@download/ENCFF747WBY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF828WYO bigBed narrowPeak optimal idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF085OEQ 433499 ENCODE Processing Pipeline 034e13a2bf614f1329eb514edc042354 https://www.encodeproject.org/files/ENCFF828WYO/@@download/ENCFF828WYO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF085OEQ bed narrowPeak optimal idr thresholded peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF211EAB, ENCFF393BVL, ENCFF419RSJ, ENCFF831MIX 226276 ENCODE Processing Pipeline 8d47cb8f8eda86e5c77610bfe5b27673 https://www.encodeproject.org/files/ENCFF085OEQ/@@download/ENCFF085OEQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF012ANG fastq reads ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 1 40 single-ended 457942205 Xiang-Dong Fu, UCSD a372cc8122ab59a3829371921960687c https://www.encodeproject.org/files/ENCFF012ANG/@@download/ENCFF012ANG.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF710RJL fastq reads ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 1 40 single-ended 604543935 Xiang-Dong Fu, UCSD aaa29ff6b72cae48537761ac06df029e https://www.encodeproject.org/files/ENCFF710RJL/@@download/ENCFF710RJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF577LLL/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF654HVL fastq reads ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 1 40 single-ended 944388231 Xiang-Dong Fu, UCSD e24172deb1af4f634691536daa6129e4 https://www.encodeproject.org/files/ENCFF654HVL/@@download/ENCFF654HVL.fastq.gz Illumina HiSeq 2500 /files/ENCFF577LLL/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF574RMG fastq reads ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 1 40 single-ended 966986424 Xiang-Dong Fu, UCSD 8304ee34e1c8539e950aab1b5adb66f9 https://www.encodeproject.org/files/ENCFF574RMG/@@download/ENCFF574RMG.fastq.gz Illumina HiSeq 2500 /files/ENCFF363JFD/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF649DPF bam unfiltered alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF012ANG, ENCFF574RMG, ENCFF643CGH 1400561966 ENCODE Processing Pipeline 78b2e3175afc0a82c51cd545890633c0 https://www.encodeproject.org/files/ENCFF649DPF/@@download/ENCFF649DPF.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF804ZTV bam unfiltered alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF012ANG, ENCFF574RMG, ENCFF807MUK 1393397770 ENCODE Processing Pipeline 785cd0f9c1e388fa2ccfe7bda23559ce https://www.encodeproject.org/files/ENCFF804ZTV/@@download/ENCFF804ZTV.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF978OWP bam unfiltered alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF643CGH, ENCFF654HVL, ENCFF710RJL 1464185033 ENCODE Processing Pipeline 5c1075970b558d7c678f9e1d552cfd7a https://www.encodeproject.org/files/ENCFF978OWP/@@download/ENCFF978OWP.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF168WKB bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF012ANG, ENCFF574RMG, ENCFF643CGH 528383772 ENCODE Processing Pipeline e25dc9cb1446113c4d9e526fcd2721d3 https://www.encodeproject.org/files/ENCFF168WKB/@@download/ENCFF168WKB.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF956NBQ bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF643CGH, ENCFF654HVL, ENCFF710RJL 508378700 ENCODE Processing Pipeline 4698dbaec1c077c949671d1ee6f0dc7d https://www.encodeproject.org/files/ENCFF956NBQ/@@download/ENCFF956NBQ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF441IWC bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF012ANG, ENCFF574RMG, ENCFF807MUK 529135936 ENCODE Processing Pipeline 14699a02e17fd9da66393dc5bff7b610 https://www.encodeproject.org/files/ENCFF441IWC/@@download/ENCFF441IWC.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF338SXL bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF654HVL, ENCFF710RJL, ENCFF807MUK 509197576 ENCODE Processing Pipeline 9ac538d7afd9a2cad6bb8b5974cc6f4f https://www.encodeproject.org/files/ENCFF338SXL/@@download/ENCFF338SXL.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF372LGG bam unfiltered alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF654HVL, ENCFF710RJL, ENCFF807MUK 1457872622 ENCODE Processing Pipeline ade9ae95fc281a56d8103b002d43e00f https://www.encodeproject.org/files/ENCFF372LGG/@@download/ENCFF372LGG.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF293FAW bigWig signal p-value ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF168WKB, ENCFF906SAI 589885010 ENCODE Processing Pipeline 349b4aa5cbcc9136181cbaf8b05c0c48 https://www.encodeproject.org/files/ENCFF293FAW/@@download/ENCFF293FAW.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF963VYN bigWig signal p-value ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF120YSP, ENCFF956NBQ 558847138 ENCODE Processing Pipeline 3327820da38af6bf4cd26d1eb5e14955 https://www.encodeproject.org/files/ENCFF963VYN/@@download/ENCFF963VYN.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF282KTO bigWig fold change over control ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF120YSP, ENCFF956NBQ 419462254 ENCODE Processing Pipeline d653c54539ec7604770c0a7bdde5097d https://www.encodeproject.org/files/ENCFF282KTO/@@download/ENCFF282KTO.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF441VVM bigWig signal p-value ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF120YSP, ENCFF168WKB, ENCFF906SAI, ENCFF956NBQ 1109045004 ENCODE Processing Pipeline e28307e2bb790acbf1ec7e5cf3594a81 https://www.encodeproject.org/files/ENCFF441VVM/@@download/ENCFF441VVM.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF810GRV bigWig fold change over control ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF168WKB, ENCFF906SAI 444198506 ENCODE Processing Pipeline c73651d7bdf9d7f32baf6df5902abc0c https://www.encodeproject.org/files/ENCFF810GRV/@@download/ENCFF810GRV.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF972DIH bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF168WKB, ENCFF906SAI 6380232 ENCODE Processing Pipeline 7ea38219d558af654a619477756e93de https://www.encodeproject.org/files/ENCFF972DIH/@@download/ENCFF972DIH.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF072GUA bigBed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF617QJI 12299494 ENCODE Processing Pipeline 110425530eeb53332527ca23333ae43c https://www.encodeproject.org/files/ENCFF072GUA/@@download/ENCFF072GUA.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF553XIO bigBed narrowPeak conservative idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF678EKM 435930 ENCODE Processing Pipeline 5126b0b1871a813aed6d17b0eef17543 https://www.encodeproject.org/files/ENCFF553XIO/@@download/ENCFF553XIO.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF420IBN bed narrowPeak optimal idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF617QJI, ENCFF949SRR, ENCFF972DIH 231329 ENCODE Processing Pipeline e006128fc8065cc3557cc761c668a519 https://www.encodeproject.org/files/ENCFF420IBN/@@download/ENCFF420IBN.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF219AMK bigBed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF972DIH 12802702 ENCODE Processing Pipeline 9c617495d578cf49ac4f0490f3781cc6 https://www.encodeproject.org/files/ENCFF219AMK/@@download/ENCFF219AMK.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF420JDS bigBed narrowPeak optimal idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF420IBN 552588 ENCODE Processing Pipeline 6a41a04c835022e88cfcfdfe82f3d383 https://www.encodeproject.org/files/ENCFF420JDS/@@download/ENCFF420JDS.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF386VOI bigWig fold change over control ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF120YSP, ENCFF168WKB, ENCFF906SAI, ENCFF956NBQ 994573682 ENCODE Processing Pipeline 2247b4421042fb8a1cd4066af35952ca https://www.encodeproject.org/files/ENCFF386VOI/@@download/ENCFF386VOI.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF104YLW bigBed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF949SRR 12488249 ENCODE Processing Pipeline 860dc52473ec59941d3fb775543273bc https://www.encodeproject.org/files/ENCFF104YLW/@@download/ENCFF104YLW.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF678EKM bed narrowPeak conservative idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF617QJI, ENCFF949SRR, ENCFF972DIH 165685 ENCODE Processing Pipeline ccae1e69da173b7291f011acfa487661 https://www.encodeproject.org/files/ENCFF678EKM/@@download/ENCFF678EKM.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF949SRR bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF120YSP, ENCFF956NBQ 6525892 ENCODE Processing Pipeline 4dcfc58b54e8cbf9752e2d0793f472dc https://www.encodeproject.org/files/ENCFF949SRR/@@download/ENCFF949SRR.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF617QJI bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF120YSP, ENCFF168WKB, ENCFF906SAI, ENCFF956NBQ 7122894 ENCODE Processing Pipeline fbe55ce77a38aed3563459afb9782ee4 https://www.encodeproject.org/files/ENCFF617QJI/@@download/ENCFF617QJI.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF800JHC bigWig signal p-value ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF338SXL, ENCFF493QSH 634163961 ENCODE Processing Pipeline 7f3f1890cd94c58fec69e9e79fdaae15 https://www.encodeproject.org/files/ENCFF800JHC/@@download/ENCFF800JHC.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF717MVB bigWig fold change over control ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF338SXL, ENCFF493QSH 420190912 ENCODE Processing Pipeline 196925cbcd89fe92488a4f1c244567a3 https://www.encodeproject.org/files/ENCFF717MVB/@@download/ENCFF717MVB.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF361TRC bigWig signal p-value ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF441IWC, ENCFF641CEP 642763593 ENCODE Processing Pipeline f948b72b93c29f8dbf45dac40fcdad70 https://www.encodeproject.org/files/ENCFF361TRC/@@download/ENCFF361TRC.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF072MHF bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF338SXL, ENCFF441IWC, ENCFF493QSH, ENCFF641CEP 7139944 ENCODE Processing Pipeline 0272228c7a5f6716852945bc3a7c0566 https://www.encodeproject.org/files/ENCFF072MHF/@@download/ENCFF072MHF.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF640DDR bigBed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF051SGG 12478232 ENCODE Processing Pipeline f869970653db1d7dfa5e4acd5f3c26ad https://www.encodeproject.org/files/ENCFF640DDR/@@download/ENCFF640DDR.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF051YGP bigWig signal p-value ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF338SXL, ENCFF441IWC, ENCFF493QSH, ENCFF641CEP 1042479138 ENCODE Processing Pipeline 43e67359c8b994dc88776637d2a61d1b https://www.encodeproject.org/files/ENCFF051YGP/@@download/ENCFF051YGP.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF411ILS bigWig fold change over control ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF338SXL, ENCFF441IWC, ENCFF493QSH, ENCFF641CEP 996806863 ENCODE Processing Pipeline f94c1205ad746ca49b03f26ebb9f5509 https://www.encodeproject.org/files/ENCFF411ILS/@@download/ENCFF411ILS.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF823POC bigWig fold change over control ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF441IWC, ENCFF641CEP 444960188 ENCODE Processing Pipeline 5546e498e2506e8b5faac75c1b3ab95f https://www.encodeproject.org/files/ENCFF823POC/@@download/ENCFF823POC.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF051SGG bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF338SXL, ENCFF493QSH 6526722 ENCODE Processing Pipeline 286f34882824089be1fb41559efb60cb https://www.encodeproject.org/files/ENCFF051SGG/@@download/ENCFF051SGG.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF314NQZ bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF441IWC, ENCFF641CEP 6331282 ENCODE Processing Pipeline 12d3e1e4d51ac0d211ec5ef5685053da https://www.encodeproject.org/files/ENCFF314NQZ/@@download/ENCFF314NQZ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF522JUV bed narrowPeak optimal idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF001TDO, ENCFF051SGG, ENCFF072MHF, ENCFF314NQZ 223615 ENCODE Processing Pipeline 2b8bc5c99e97baca5a929efe0fafee86 https://www.encodeproject.org/files/ENCFF522JUV/@@download/ENCFF522JUV.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF302NZN bigBed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF072MHF 12331754 ENCODE Processing Pipeline b42f4b5058059074a3f919ee50f5e110 https://www.encodeproject.org/files/ENCFF302NZN/@@download/ENCFF302NZN.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF648TYH bigBed narrowPeak optimal idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF522JUV 537189 ENCODE Processing Pipeline 322130f80dde074c996bd235442784f9 https://www.encodeproject.org/files/ENCFF648TYH/@@download/ENCFF648TYH.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF270GDQ bigBed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF314NQZ 12729865 ENCODE Processing Pipeline e2f04ab2a2cd823c1726bcff61f9b117 https://www.encodeproject.org/files/ENCFF270GDQ/@@download/ENCFF270GDQ.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF301USB bed narrowPeak conservative idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF001TDO, ENCFF051SGG, ENCFF072MHF, ENCFF314NQZ 167884 ENCODE Processing Pipeline dd963a659a1c6393a8cbc0bd216b8be1 https://www.encodeproject.org/files/ENCFF301USB/@@download/ENCFF301USB.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF982EHX bigBed narrowPeak conservative idr thresholded peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF301USB 439420 ENCODE Processing Pipeline f7c60cb42d6939499d5e2fa4e909d31d https://www.encodeproject.org/files/ENCFF982EHX/@@download/ENCFF982EHX.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF295WAN fastq reads ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 1173605283 Xiang-Dong Fu, UCSD 254872b3f2a6b154aca24c20bd4e27cf https://www.encodeproject.org/files/ENCFF295WAN/@@download/ENCFF295WAN.fastq.gz Illumina HiSeq 2500 /files/ENCFF269ATE/ released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF990WRZ fastq reads ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 1233392667 Xiang-Dong Fu, UCSD e6e8fcc5489592ac55f574f295bc9789 https://www.encodeproject.org/files/ENCFF990WRZ/@@download/ENCFF990WRZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF442FJZ/ released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF938JZW bam unfiltered alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF990WRZ 1626312725 ENCODE Processing Pipeline bf6296756bed70d3d1831277af052800 https://www.encodeproject.org/files/ENCFF938JZW/@@download/ENCFF938JZW.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF504FXG bam unfiltered alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF990WRZ 1618205262 ENCODE Processing Pipeline 399766ae296210e84ce4230dcac3a849 https://www.encodeproject.org/files/ENCFF504FXG/@@download/ENCFF504FXG.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF310NYX bam unfiltered alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF295WAN, ENCFF807MUK 1537917859 ENCODE Processing Pipeline 4107cf0d1f1ba02f8d2a9f7f82b394fe https://www.encodeproject.org/files/ENCFF310NYX/@@download/ENCFF310NYX.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF013XEG bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF990WRZ 1014042102 ENCODE Processing Pipeline 9906800013ac1d3780a5bee8e52ec37b https://www.encodeproject.org/files/ENCFF013XEG/@@download/ENCFF013XEG.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF462LKA bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF295WAN, ENCFF807MUK 945315412 ENCODE Processing Pipeline 13c1637267b19b48a1404d0648d8d50f https://www.encodeproject.org/files/ENCFF462LKA/@@download/ENCFF462LKA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF732ZVM bam unfiltered alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF295WAN, ENCFF643CGH 1545896178 ENCODE Processing Pipeline ef663caf181f7f29cfc7884ea2be20ed https://www.encodeproject.org/files/ENCFF732ZVM/@@download/ENCFF732ZVM.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF040PMB bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF295WAN, ENCFF643CGH 944496870 ENCODE Processing Pipeline c1b9728c8d41f12249afd408bccc6148 https://www.encodeproject.org/files/ENCFF040PMB/@@download/ENCFF040PMB.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF135XJA bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF990WRZ 1014853996 ENCODE Processing Pipeline 2771f5872ef3035f1e999bed19d5f2db https://www.encodeproject.org/files/ENCFF135XJA/@@download/ENCFF135XJA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF810WTC bigWig signal p-value ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF135XJA, ENCFF137JPI, ENCFF462LKA, ENCFF500AAN 970295420 ENCODE Processing Pipeline 089f1f2de46c724a8286017ad424eb55 https://www.encodeproject.org/files/ENCFF810WTC/@@download/ENCFF810WTC.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF502DYQ bigWig signal p-value ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF137JPI, ENCFF462LKA 660816328 ENCODE Processing Pipeline a0ae635d483928c3f247faa4a75a2db6 https://www.encodeproject.org/files/ENCFF502DYQ/@@download/ENCFF502DYQ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF015SQW bigWig signal p-value ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF135XJA, ENCFF500AAN 567211643 ENCODE Processing Pipeline 07ebfe2b83b03c4cad73795afa9e77bc https://www.encodeproject.org/files/ENCFF015SQW/@@download/ENCFF015SQW.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF386XFP bigWig fold change over control ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF137JPI, ENCFF462LKA 486130938 ENCODE Processing Pipeline b2f52e60975c7fadc4117f7ca15f9be5 https://www.encodeproject.org/files/ENCFF386XFP/@@download/ENCFF386XFP.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF920EQY bigWig fold change over control ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF135XJA, ENCFF500AAN 514049311 ENCODE Processing Pipeline c53a3de860b4a640b57d228b77aee94a https://www.encodeproject.org/files/ENCFF920EQY/@@download/ENCFF920EQY.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF625LUF bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF135XJA, ENCFF137JPI, ENCFF462LKA, ENCFF500AAN 6940819 ENCODE Processing Pipeline bf09e2d321994ac14ebf7e6f690bacca https://www.encodeproject.org/files/ENCFF625LUF/@@download/ENCFF625LUF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF470CIC bigWig fold change over control ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF135XJA, ENCFF137JPI, ENCFF462LKA, ENCFF500AAN 1077729740 ENCODE Processing Pipeline 6dd3dfcee402ae7e37568ec45e1d20a5 https://www.encodeproject.org/files/ENCFF470CIC/@@download/ENCFF470CIC.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF640MOW bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF137JPI, ENCFF462LKA 5437056 ENCODE Processing Pipeline 71022d9ddfec1b37ca1f962b1e042cc0 https://www.encodeproject.org/files/ENCFF640MOW/@@download/ENCFF640MOW.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF207TNB bigBed narrowPeak conservative idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF843YBE 206529 ENCODE Processing Pipeline 5310dd3d5e4df0228272d3cb45bd5419 https://www.encodeproject.org/files/ENCFF207TNB/@@download/ENCFF207TNB.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF263BQX bigBed narrowPeak optimal idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF530LSA 286131 ENCODE Processing Pipeline 37bdc2d41dc5c88406849429f6469645 https://www.encodeproject.org/files/ENCFF263BQX/@@download/ENCFF263BQX.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF657QUD bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF135XJA, ENCFF500AAN 5724174 ENCODE Processing Pipeline befd04f20d78959ba8db1b890bd3a422 https://www.encodeproject.org/files/ENCFF657QUD/@@download/ENCFF657QUD.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF899PFX bigBed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF657QUD 13431847 ENCODE Processing Pipeline af88f49916084741f315814ec1df9448 https://www.encodeproject.org/files/ENCFF899PFX/@@download/ENCFF899PFX.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF583DMX bigBed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF640MOW 13422330 ENCODE Processing Pipeline 6b89d8016fd6736dc0dac3d834f0fa87 https://www.encodeproject.org/files/ENCFF583DMX/@@download/ENCFF583DMX.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF530LSA bed narrowPeak optimal idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF625LUF, ENCFF640MOW, ENCFF657QUD 131195 ENCODE Processing Pipeline 4a92466ac0c7aa892d275f40b241a09e https://www.encodeproject.org/files/ENCFF530LSA/@@download/ENCFF530LSA.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF209TPJ bigBed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF625LUF 13512918 ENCODE Processing Pipeline a5c1d4f5b4064fbb88e57109036a4a65 https://www.encodeproject.org/files/ENCFF209TPJ/@@download/ENCFF209TPJ.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF843YBE bed narrowPeak conservative idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF625LUF, ENCFF640MOW, ENCFF657QUD 79696 ENCODE Processing Pipeline 31b01057d93776ab6e71ee3a8ab4429c https://www.encodeproject.org/files/ENCFF843YBE/@@download/ENCFF843YBE.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF195BFL bigWig signal p-value ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF013XEG, ENCFF060VZM 489300448 ENCODE Processing Pipeline 62d81411d7d30f0ebc1a53f9b73854f1 https://www.encodeproject.org/files/ENCFF195BFL/@@download/ENCFF195BFL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF773XGD bigWig signal p-value ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF013XEG, ENCFF040PMB, ENCFF060VZM, ENCFF809MGU 1098190364 ENCODE Processing Pipeline 7c1598a0b62cbc76897ac907e549df18 https://www.encodeproject.org/files/ENCFF773XGD/@@download/ENCFF773XGD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF335IUS bigWig signal p-value ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF040PMB, ENCFF809MGU 631386498 ENCODE Processing Pipeline 5e6110373358b52d73725fe02cda3f42 https://www.encodeproject.org/files/ENCFF335IUS/@@download/ENCFF335IUS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF973PZM bigWig fold change over control ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF040PMB, ENCFF809MGU 487649968 ENCODE Processing Pipeline f458c6cfdccae4aa114418098967b7d1 https://www.encodeproject.org/files/ENCFF973PZM/@@download/ENCFF973PZM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF228ZAA bigWig fold change over control ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF013XEG, ENCFF060VZM 511756229 ENCODE Processing Pipeline 74dcfaf1f4f3c7fe0f7f461dd58f16f0 https://www.encodeproject.org/files/ENCFF228ZAA/@@download/ENCFF228ZAA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF159FEG bigWig fold change over control ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF013XEG, ENCFF040PMB, ENCFF060VZM, ENCFF809MGU 1073270351 ENCODE Processing Pipeline dbfc1b53a3556597b8465c4ad7f0e69c https://www.encodeproject.org/files/ENCFF159FEG/@@download/ENCFF159FEG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF509ZOA bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF040PMB, ENCFF809MGU 5434506 ENCODE Processing Pipeline 0d1c30d90c08b638d6afc4602191836b https://www.encodeproject.org/files/ENCFF509ZOA/@@download/ENCFF509ZOA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF679KAJ bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF013XEG, ENCFF040PMB, ENCFF060VZM, ENCFF809MGU 6927771 ENCODE Processing Pipeline 5d6a85e18f44103b5db0824d56dd06fe https://www.encodeproject.org/files/ENCFF679KAJ/@@download/ENCFF679KAJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF307YZB bed narrowPeak conservative idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF509ZOA, ENCFF518JPO, ENCFF679KAJ 83062 ENCODE Processing Pipeline 5ca37a7eba93bbdff1cc61e921d6bc39 https://www.encodeproject.org/files/ENCFF307YZB/@@download/ENCFF307YZB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF696QPP bed narrowPeak optimal idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF509ZOA, ENCFF518JPO, ENCFF679KAJ 135399 ENCODE Processing Pipeline 9c08161e34bb935a2958bf89f751c50e https://www.encodeproject.org/files/ENCFF696QPP/@@download/ENCFF696QPP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF460ADX bigBed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF509ZOA 13431010 ENCODE Processing Pipeline 8d40c6ea94c9cb5453dcb9b4376ec89b https://www.encodeproject.org/files/ENCFF460ADX/@@download/ENCFF460ADX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF832CQA bigBed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF518JPO 13440872 ENCODE Processing Pipeline 88618f068ca558ddebe53f6d859b9332 https://www.encodeproject.org/files/ENCFF832CQA/@@download/ENCFF832CQA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF201YVV bigBed narrowPeak conservative idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF307YZB 213051 ENCODE Processing Pipeline d3a0071f083e74fad34000445cf8e67e https://www.encodeproject.org/files/ENCFF201YVV/@@download/ENCFF201YVV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF518JPO bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF013XEG, ENCFF060VZM 5653404 ENCODE Processing Pipeline 4aee2c4f47e60be59e86b1b522ec79c9 https://www.encodeproject.org/files/ENCFF518JPO/@@download/ENCFF518JPO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF238IPF bigBed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF679KAJ 13551632 ENCODE Processing Pipeline 75cde69dd089117ea7ccff783ff6a70a https://www.encodeproject.org/files/ENCFF238IPF/@@download/ENCFF238IPF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF609NMG bigBed narrowPeak optimal idr thresholded peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF696QPP 293651 ENCODE Processing Pipeline e690faf4db7396a15d8005ee1f11381f https://www.encodeproject.org/files/ENCFF609NMG/@@download/ENCFF609NMG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF522MWJ fastq reads ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 605657482 Xiang-Dong Fu, UCSD bbe4b90200d9268cae014c7b5f922dee https://www.encodeproject.org/files/ENCFF522MWJ/@@download/ENCFF522MWJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF905CNP fastq reads ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 589508696 Xiang-Dong Fu, UCSD 5c22f0b6ba4cb9c9e42c12a8d25ba11f https://www.encodeproject.org/files/ENCFF905CNP/@@download/ENCFF905CNP.fastq.gz Illumina HiSeq 2500 /files/ENCFF025UQF/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF743WPX bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF522MWJ, ENCFF807MUK 433971631 ENCODE Processing Pipeline 8f8f16256ee3a71a60638632fb0d7874 https://www.encodeproject.org/files/ENCFF743WPX/@@download/ENCFF743WPX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF276NAQ bam unfiltered alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF522MWJ, ENCFF807MUK 803714630 ENCODE Processing Pipeline 95baccd9c519a8562f28aabdc3f10c1f https://www.encodeproject.org/files/ENCFF276NAQ/@@download/ENCFF276NAQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF674CKY bam unfiltered alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF522MWJ, ENCFF643CGH 806851509 ENCODE Processing Pipeline 8f1486f776b68d3a5e42cc36319abe31 https://www.encodeproject.org/files/ENCFF674CKY/@@download/ENCFF674CKY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF242PNV bam unfiltered alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF905CNP 780660528 ENCODE Processing Pipeline 31e97ac83245131f828cf2b9b9e07db1 https://www.encodeproject.org/files/ENCFF242PNV/@@download/ENCFF242PNV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF366SWW bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF522MWJ, ENCFF643CGH 433410939 ENCODE Processing Pipeline 1d48d6f06904ee37cd550974730d570c https://www.encodeproject.org/files/ENCFF366SWW/@@download/ENCFF366SWW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF280IUC bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF905CNP 421090299 ENCODE Processing Pipeline 0f72be0ce9cc3ca484f8c43fee7361bc https://www.encodeproject.org/files/ENCFF280IUC/@@download/ENCFF280IUC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF418IAI bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF905CNP 420497232 ENCODE Processing Pipeline fee829188bb41f1eb083953f9ca4fb27 https://www.encodeproject.org/files/ENCFF418IAI/@@download/ENCFF418IAI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF221IKQ bam unfiltered alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF905CNP 783275131 ENCODE Processing Pipeline 06bf248bfb290aa9e3ecd959da778861 https://www.encodeproject.org/files/ENCFF221IKQ/@@download/ENCFF221IKQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF353AGJ bigBed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF477IOW 10552911 ENCODE Processing Pipeline 8e256f2cf332cd14f13bbbafa6eb2034 https://www.encodeproject.org/files/ENCFF353AGJ/@@download/ENCFF353AGJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF928GCC bigWig fold change over control ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF366SWW 282306378 ENCODE Processing Pipeline f7567182201346046b6ded743944f322 https://www.encodeproject.org/files/ENCFF928GCC/@@download/ENCFF928GCC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF695QLX bigWig signal p-value ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF366SWW 379286918 ENCODE Processing Pipeline f38696e8f9089f8d3918b495af0a6356 https://www.encodeproject.org/files/ENCFF695QLX/@@download/ENCFF695QLX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF477IOW bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF418IAI 4479728 ENCODE Processing Pipeline f863948f324fbcea38b89f5d05ce6e22 https://www.encodeproject.org/files/ENCFF477IOW/@@download/ENCFF477IOW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF810ZWL bigWig signal p-value ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF366SWW, ENCFF418IAI 718173053 ENCODE Processing Pipeline 19da1094cf0901e8df80ddfd3cf6a0e9 https://www.encodeproject.org/files/ENCFF810ZWL/@@download/ENCFF810ZWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF432QQR bigWig fold change over control ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF418IAI 268096449 ENCODE Processing Pipeline 9eabd0ee05c62a01fe7e16154cae48ad https://www.encodeproject.org/files/ENCFF432QQR/@@download/ENCFF432QQR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF909GFF bigWig signal p-value ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF418IAI 380335714 ENCODE Processing Pipeline 6399ff9d28320eca15cf27d5de7f2049 https://www.encodeproject.org/files/ENCFF909GFF/@@download/ENCFF909GFF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF345XUQ bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF366SWW 4258937 ENCODE Processing Pipeline dad18a3df6c07a43daec3c00c21bd394 https://www.encodeproject.org/files/ENCFF345XUQ/@@download/ENCFF345XUQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF298ZSE bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF366SWW, ENCFF418IAI 5725770 ENCODE Processing Pipeline b1fa4846649da9a2d883b51e72d254bd https://www.encodeproject.org/files/ENCFF298ZSE/@@download/ENCFF298ZSE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF442GXI bigBed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF345XUQ 10376303 ENCODE Processing Pipeline 4be7504bec53ec1bb904f2fb8fbbbaea https://www.encodeproject.org/files/ENCFF442GXI/@@download/ENCFF442GXI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF177MFI bigBed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF298ZSE 13309775 ENCODE Processing Pipeline d3d30d4f85b0f3619a8c61765fc2e27f https://www.encodeproject.org/files/ENCFF177MFI/@@download/ENCFF177MFI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF642YKQ bigWig fold change over control ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF366SWW, ENCFF418IAI 637923636 ENCODE Processing Pipeline 48a22f78851def6339dcaaeca0ffef82 https://www.encodeproject.org/files/ENCFF642YKQ/@@download/ENCFF642YKQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF704PGT bed narrowPeak optimal idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF298ZSE, ENCFF345XUQ, ENCFF419RSJ, ENCFF477IOW 11578 ENCODE Processing Pipeline 5b9f6b6369948fc225c0e019726dee1c https://www.encodeproject.org/files/ENCFF704PGT/@@download/ENCFF704PGT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF457TVR bed narrowPeak conservative idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF298ZSE, ENCFF345XUQ, ENCFF419RSJ, ENCFF477IOW 9524 ENCODE Processing Pipeline c87946c31ac0295be3ee3e4e04e5ebb1 https://www.encodeproject.org/files/ENCFF457TVR/@@download/ENCFF457TVR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF873IAB bigBed narrowPeak optimal idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF704PGT 92110 ENCODE Processing Pipeline cd34c4f6eaec7227d635b21ae89b26d0 https://www.encodeproject.org/files/ENCFF873IAB/@@download/ENCFF873IAB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF187HZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF457TVR 97220 ENCODE Processing Pipeline efe2bb291e67e6b8a8b36e7010ff845f https://www.encodeproject.org/files/ENCFF187HZZ/@@download/ENCFF187HZZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF379EHI bigWig signal p-value ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF280IUC, ENCFF477SGV 372861123 ENCODE Processing Pipeline 16eed08786fa3c1cf49a32faebc1344f https://www.encodeproject.org/files/ENCFF379EHI/@@download/ENCFF379EHI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF151PBI bigWig signal p-value ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF280IUC, ENCFF477SGV, ENCFF705ZEH, ENCFF743WPX 735809027 ENCODE Processing Pipeline 5db97c1be0eabe9e0370dfb195d5e313 https://www.encodeproject.org/files/ENCFF151PBI/@@download/ENCFF151PBI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF583GKE bed narrowPeak optimal idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF470GVA, ENCFF580YZC, ENCFF655DKD 10866 ENCODE Processing Pipeline e86487c2f5bfd083078a70a39589e586 https://www.encodeproject.org/files/ENCFF583GKE/@@download/ENCFF583GKE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF655VMC bigWig fold change over control ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF743WPX 267856650 ENCODE Processing Pipeline 1bc28ca7aa903fe1d912e6b564cb4926 https://www.encodeproject.org/files/ENCFF655VMC/@@download/ENCFF655VMC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF655DKD bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF280IUC, ENCFF477SGV, ENCFF705ZEH, ENCFF743WPX 5726329 ENCODE Processing Pipeline 917e885fcc5ff0ed37a77d8afb906701 https://www.encodeproject.org/files/ENCFF655DKD/@@download/ENCFF655DKD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF626OFL bigWig signal p-value ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF743WPX 439658940 ENCODE Processing Pipeline 6157487a50ff8bd16a83cce590fd38e1 https://www.encodeproject.org/files/ENCFF626OFL/@@download/ENCFF626OFL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF862OJY bigWig fold change over control ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF280IUC, ENCFF477SGV 266791767 ENCODE Processing Pipeline fe3096da11ab5f07af3f63a4554082c3 https://www.encodeproject.org/files/ENCFF862OJY/@@download/ENCFF862OJY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF254GMG bigBed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF655DKD 13295293 ENCODE Processing Pipeline da4aaa0c1f3af4941b741f18ea41105f https://www.encodeproject.org/files/ENCFF254GMG/@@download/ENCFF254GMG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF761YMH bigWig fold change over control ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF280IUC, ENCFF477SGV, ENCFF705ZEH, ENCFF743WPX 620980626 ENCODE Processing Pipeline 72069c064891e6a115a54d8bb02141a3 https://www.encodeproject.org/files/ENCFF761YMH/@@download/ENCFF761YMH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF580YZC bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF280IUC, ENCFF477SGV 4439473 ENCODE Processing Pipeline 0071dbbbdc8a024e819944fc4bb4ebe8 https://www.encodeproject.org/files/ENCFF580YZC/@@download/ENCFF580YZC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF470GVA bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF743WPX 4288879 ENCODE Processing Pipeline c50030cc451b3918150cb26cce04d51b https://www.encodeproject.org/files/ENCFF470GVA/@@download/ENCFF470GVA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF853SVN bigBed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF580YZC 10535705 ENCODE Processing Pipeline 8622198d66a2c1bb6c4c1f8aa3789ed0 https://www.encodeproject.org/files/ENCFF853SVN/@@download/ENCFF853SVN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF829PUD bigBed narrowPeak conservative idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF983SZW 86474 ENCODE Processing Pipeline 0f9612c76fc966f9128294fbe7e067f0 https://www.encodeproject.org/files/ENCFF829PUD/@@download/ENCFF829PUD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF690WTD bigBed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF470GVA 10422809 ENCODE Processing Pipeline c379b7944a59b2db6ecb17aacb309303 https://www.encodeproject.org/files/ENCFF690WTD/@@download/ENCFF690WTD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF983SZW bed narrowPeak conservative idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF470GVA, ENCFF580YZC, ENCFF655DKD 9724 ENCODE Processing Pipeline d9bd45804fecfe4e1861cb0d911ee5ea https://www.encodeproject.org/files/ENCFF983SZW/@@download/ENCFF983SZW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF960EEB bigBed narrowPeak optimal idr thresholded peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF583GKE 89291 ENCODE Processing Pipeline 7ea877c239174bbcab81e14f9754b7c3 https://www.encodeproject.org/files/ENCFF960EEB/@@download/ENCFF960EEB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF872RFO bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF861CWB 1182217490 ENCODE Processing Pipeline 68e001f23e5217f24267ac6def0642a5 https://www.encodeproject.org/files/ENCFF872RFO/@@download/ENCFF872RFO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF723GZZ bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF861CWB 1255405944 ENCODE Processing Pipeline a9691d814f0dc570c091821b433aeae0 https://www.encodeproject.org/files/ENCFF723GZZ/@@download/ENCFF723GZZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF010LDL bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF276PEK 1235923721 ENCODE Processing Pipeline d0a149baa9ef0b11b470451a9638f989 https://www.encodeproject.org/files/ENCFF010LDL/@@download/ENCFF010LDL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF961URG bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF276PEK 1340751981 ENCODE Processing Pipeline 68bb37518a9754c846b3f22d4e0fdaa5 https://www.encodeproject.org/files/ENCFF961URG/@@download/ENCFF961URG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF482NVV bigBed narrowPeak conservative idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF536ACL 1633718 ENCODE Processing Pipeline b353081dc4622f885b5c4e23352436b2 https://www.encodeproject.org/files/ENCFF482NVV/@@download/ENCFF482NVV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF784DGA bed narrowPeak optimal idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF202FHN, ENCFF419RSJ, ENCFF524MHL, ENCFF652NAH 730705 ENCODE Processing Pipeline 1bb40ace3d8e477bef4d6275c1310b96 https://www.encodeproject.org/files/ENCFF784DGA/@@download/ENCFF784DGA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF652NAH bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF276PEK, ENCFF861CWB 7226548 ENCODE Processing Pipeline b119dbff0bdf217fe0353755b0f7cae5 https://www.encodeproject.org/files/ENCFF652NAH/@@download/ENCFF652NAH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF849PPY bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF652NAH 13088356 ENCODE Processing Pipeline 51e58902372fd53c27768e38d789bc75 https://www.encodeproject.org/files/ENCFF849PPY/@@download/ENCFF849PPY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF536ACL bed narrowPeak conservative idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF202FHN, ENCFF419RSJ, ENCFF524MHL, ENCFF652NAH 727908 ENCODE Processing Pipeline eb9d9ff8863ed3a9e3e1453597e9ce7d https://www.encodeproject.org/files/ENCFF536ACL/@@download/ENCFF536ACL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF129EFK bigBed narrowPeak optimal idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF784DGA 1650417 ENCODE Processing Pipeline 59f8104c4693d87be0a99003ae563ce1 https://www.encodeproject.org/files/ENCFF129EFK/@@download/ENCFF129EFK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF906LEJ fastq reads ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF872RVH 2062095047 Michael Snyder, Stanford 85054be325346c51cbc291d5cc26ecf2 SRA:SRR5111646 https://www.encodeproject.org/files/ENCFF906LEJ/@@download/ENCFF906LEJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF592FUT fastq reads ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF018COO 2456043392 Michael Snyder, Stanford 67990be0e84b588d1e8e84fb22ecf4ab SRA:SRR5111645 https://www.encodeproject.org/files/ENCFF592FUT/@@download/ENCFF592FUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF872RVH fastq reads ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF906LEJ 2130921219 Michael Snyder, Stanford a5cbe6e472ba80d6fee3dc64822e4d07 SRA:SRR5111646 https://www.encodeproject.org/files/ENCFF872RVH/@@download/ENCFF872RVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF018COO fastq reads ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF592FUT 2527284918 Michael Snyder, Stanford f61dcdb3756dc091a1c5a0e11b4a9f5b SRA:SRR5111645 https://www.encodeproject.org/files/ENCFF018COO/@@download/ENCFF018COO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF314JRO bam unfiltered alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF018COO, ENCFF592FUT, ENCFF643CGH 5375835003 ENCODE Processing Pipeline e7fdb515a380c3ada30f2230b438fc27 https://www.encodeproject.org/files/ENCFF314JRO/@@download/ENCFF314JRO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF311KDI bam unfiltered alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF872RVH, ENCFF906LEJ 4572572024 ENCODE Processing Pipeline 2da0de667a2af06460b2f17c3a815dcc https://www.encodeproject.org/files/ENCFF311KDI/@@download/ENCFF311KDI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF869WZQ bam unfiltered alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF872RVH, ENCFF906LEJ 4575171313 ENCODE Processing Pipeline 06aa28a16832c12053a02294c63f6fce https://www.encodeproject.org/files/ENCFF869WZQ/@@download/ENCFF869WZQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF417WCB bam unfiltered alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF018COO, ENCFF592FUT, ENCFF807MUK 5373058195 ENCODE Processing Pipeline abdf16d696bdeb32f44b5bc4a488e282 https://www.encodeproject.org/files/ENCFF417WCB/@@download/ENCFF417WCB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF754QAG bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF872RVH, ENCFF906LEJ 3781547657 ENCODE Processing Pipeline 73934945bdda0890ba60b94d8e510ebc https://www.encodeproject.org/files/ENCFF754QAG/@@download/ENCFF754QAG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF276PEK bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF018COO, ENCFF592FUT, ENCFF643CGH 4356995125 ENCODE Processing Pipeline c17a6f8231d3bde2badea043ef7bd12b https://www.encodeproject.org/files/ENCFF276PEK/@@download/ENCFF276PEK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF265PPN bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF018COO, ENCFF592FUT, ENCFF807MUK 4355713774 ENCODE Processing Pipeline be31fe765b2091c9e06660e49c1a6b84 https://www.encodeproject.org/files/ENCFF265PPN/@@download/ENCFF265PPN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF861CWB bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF872RVH, ENCFF906LEJ 3782532463 ENCODE Processing Pipeline 747b303f53d6264902197956478098ca https://www.encodeproject.org/files/ENCFF861CWB/@@download/ENCFF861CWB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF466NTB bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF754QAG 1325852901 ENCODE Processing Pipeline c978f09ce280fe0ea930f5253d2d9d22 https://www.encodeproject.org/files/ENCFF466NTB/@@download/ENCFF466NTB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF088UEM bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF265PPN 1429650001 ENCODE Processing Pipeline fc9dd0757feeac5f616b41fdfa50ddb9 https://www.encodeproject.org/files/ENCFF088UEM/@@download/ENCFF088UEM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF393ERU bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF265PPN, ENCFF754QAG 1685725916 ENCODE Processing Pipeline a6ff5dbf6f006ecc30c312c95629ae02 https://www.encodeproject.org/files/ENCFF393ERU/@@download/ENCFF393ERU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF928QTP bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF754QAG 1281561269 ENCODE Processing Pipeline 8151f6cdcda8e6c42f52a0c0436724a8 https://www.encodeproject.org/files/ENCFF928QTP/@@download/ENCFF928QTP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF021EUR bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF265PPN 1383759213 ENCODE Processing Pipeline cbd0213c9f99c1a6df77a08e7d5886d3 https://www.encodeproject.org/files/ENCFF021EUR/@@download/ENCFF021EUR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF519IDT bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF265PPN, ENCFF754QAG 1859851640 ENCODE Processing Pipeline 0bce7f1302f691c351f4596589d269ae https://www.encodeproject.org/files/ENCFF519IDT/@@download/ENCFF519IDT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF750SRP bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF754QAG 7099179 ENCODE Processing Pipeline 092b96b9751fceb0ea57ff3821c2e7d7 https://www.encodeproject.org/files/ENCFF750SRP/@@download/ENCFF750SRP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF241GHZ bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF265PPN 7075753 ENCODE Processing Pipeline b5f74ce8c1a40cd865b3bf959ac06c1f https://www.encodeproject.org/files/ENCFF241GHZ/@@download/ENCFF241GHZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF349HZL bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF265PPN, ENCFF754QAG 7262721 ENCODE Processing Pipeline 6662ed3cdce5444b1a9f207220b19fa2 https://www.encodeproject.org/files/ENCFF349HZL/@@download/ENCFF349HZL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF834AYL bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750SRP 13184268 ENCODE Processing Pipeline f4f383897e4cc8de7e7d29d36cd4f8d3 https://www.encodeproject.org/files/ENCFF834AYL/@@download/ENCFF834AYL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF475SWM bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF241GHZ 13293269 ENCODE Processing Pipeline 02b0efb84597e4a518fb1e34491173f3 https://www.encodeproject.org/files/ENCFF475SWM/@@download/ENCFF475SWM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF822HDY bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF349HZL 13118235 ENCODE Processing Pipeline b7f969c322a37bb6edfd6def27783f0c https://www.encodeproject.org/files/ENCFF822HDY/@@download/ENCFF822HDY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF306LHN bigBed narrowPeak optimal idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF231DQM 1649613 ENCODE Processing Pipeline f7bd452f93c3b93191a4372a0fde7436 https://www.encodeproject.org/files/ENCFF306LHN/@@download/ENCFF306LHN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF231DQM bed narrowPeak optimal idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF241GHZ, ENCFF349HZL, ENCFF750SRP 738465 ENCODE Processing Pipeline 471c8cec16fab92afc7e4af3761f9ab9 https://www.encodeproject.org/files/ENCFF231DQM/@@download/ENCFF231DQM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF133ANL bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF861CWB 1190099751 ENCODE Processing Pipeline dc9e63a541b48a42daf80e808b4f1198 https://www.encodeproject.org/files/ENCFF133ANL/@@download/ENCFF133ANL.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF242AJW bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF276PEK 1273791438 ENCODE Processing Pipeline f0bf0d5dfc0ab3466ee11829400ddcaf https://www.encodeproject.org/files/ENCFF242AJW/@@download/ENCFF242AJW.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF124JVF bigWig signal p-value ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF276PEK, ENCFF861CWB 1561874501 ENCODE Processing Pipeline 84877e0757e4e94619f24a83e984b999 https://www.encodeproject.org/files/ENCFF124JVF/@@download/ENCFF124JVF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF967DFE bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF861CWB 1278418175 ENCODE Processing Pipeline b001cde1d8494172e79cf43d7efe4e98 https://www.encodeproject.org/files/ENCFF967DFE/@@download/ENCFF967DFE.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF733WSI bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF276PEK 1376891288 ENCODE Processing Pipeline 5ab6ac80233ff79a29f285f66949fac3 https://www.encodeproject.org/files/ENCFF733WSI/@@download/ENCFF733WSI.bigWig GRCh38 archived missing genetic modification characterization missing control alignments ENCFF859MJW bigWig fold change over control ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF276PEK, ENCFF861CWB 1865532951 ENCODE Processing Pipeline 4c4316fc46541e13547b7d5195520c1b https://www.encodeproject.org/files/ENCFF859MJW/@@download/ENCFF859MJW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF392MXA bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF961HZB 13092348 ENCODE Processing Pipeline 94e61c1dd73cd94207e71ff535a0935c https://www.encodeproject.org/files/ENCFF392MXA/@@download/ENCFF392MXA.bigBed GRCh38 archived missing genetic modification characterization missing control alignments ENCFF202FHN bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF276PEK 7014667 ENCODE Processing Pipeline a7d89c44471e3b56af16b1a1b5e70b21 https://www.encodeproject.org/files/ENCFF202FHN/@@download/ENCFF202FHN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF978NZZ bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF202FHN 13301240 ENCODE Processing Pipeline 1c351c05678ff91024e436f68224b8bf https://www.encodeproject.org/files/ENCFF978NZZ/@@download/ENCFF978NZZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF193NHQ bed narrowPeak optimal idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF202FHN, ENCFF419RSJ, ENCFF524MHL, ENCFF961HZB 728243 ENCODE Processing Pipeline e15f79bf600b6e06a700468afaf37e80 https://www.encodeproject.org/files/ENCFF193NHQ/@@download/ENCFF193NHQ.bed.gz GRCh38 archived missing genetic modification characterization missing control alignments ENCFF524MHL bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF861CWB 7043404 ENCODE Processing Pipeline bc07c7637c4d6191b36cb59ceaca3ea0 https://www.encodeproject.org/files/ENCFF524MHL/@@download/ENCFF524MHL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF961HZB bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF276PEK, ENCFF861CWB 7225527 ENCODE Processing Pipeline 39cc2a2a45671e884c78953e62da7e9c https://www.encodeproject.org/files/ENCFF961HZB/@@download/ENCFF961HZB.bed.gz GRCh38 archived missing genetic modification characterization missing control alignments ENCFF896GJA bigBed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF524MHL 13191441 ENCODE Processing Pipeline 4d1ee23e93b93f934a0f8d8432f7405f https://www.encodeproject.org/files/ENCFF896GJA/@@download/ENCFF896GJA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF141GEY bigBed narrowPeak optimal idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193NHQ 1646722 ENCODE Processing Pipeline 05154dc12b508cdad7429270457f485a https://www.encodeproject.org/files/ENCFF141GEY/@@download/ENCFF141GEY.bigBed GRCh38 archived missing genetic modification characterization missing control alignments ENCFF965AHI bigBed narrowPeak conservative idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF684RTT 1636782 ENCODE Processing Pipeline 45aa550acd97dfb9b29fd752bb0d827e https://www.encodeproject.org/files/ENCFF965AHI/@@download/ENCFF965AHI.bigBed GRCh38 archived missing genetic modification characterization missing control alignments ENCFF684RTT bed narrowPeak conservative idr thresholded peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF202FHN, ENCFF419RSJ, ENCFF524MHL, ENCFF961HZB 729382 ENCODE Processing Pipeline a2050623185b1fd0720593d8bd593e75 https://www.encodeproject.org/files/ENCFF684RTT/@@download/ENCFF684RTT.bed.gz GRCh38 archived missing genetic modification characterization missing control alignments ENCFF441WDI fastq reads ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF561LOR 3161942373 Michael Snyder, Stanford 7e969bdb2eca7361bba71dd592e7f94a SRA:SRR6214214 https://www.encodeproject.org/files/ENCFF441WDI/@@download/ENCFF441WDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF796LKB fastq reads ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF331OEC 2333148912 Michael Snyder, Stanford c34efdd81b63700c6fe1cf2b2bd1487d SRA:SRR6214213 https://www.encodeproject.org/files/ENCFF796LKB/@@download/ENCFF796LKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF331OEC fastq reads ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF796LKB 2281738330 Michael Snyder, Stanford 0c2519bfb6c6f84f7385327727d4db06 SRA:SRR6214213 https://www.encodeproject.org/files/ENCFF331OEC/@@download/ENCFF331OEC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF561LOR fastq reads ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF441WDI 3099357338 Michael Snyder, Stanford 3da8561d83f226334b1fc3e4bf9a079b SRA:SRR6214214 https://www.encodeproject.org/files/ENCFF561LOR/@@download/ENCFF561LOR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF618JFD bam unfiltered alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF331OEC, ENCFF796LKB, ENCFF807MUK 4762166952 ENCODE Processing Pipeline ce83c428ed1c787be8fd796f16986648 https://www.encodeproject.org/files/ENCFF618JFD/@@download/ENCFF618JFD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF614FKO bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF331OEC, ENCFF796LKB, ENCFF807MUK 3968019034 ENCODE Processing Pipeline 2403141c5aa23b4d0090783627b6f4da https://www.encodeproject.org/files/ENCFF614FKO/@@download/ENCFF614FKO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF504ARY bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF331OEC, ENCFF643CGH, ENCFF796LKB 3971630337 ENCODE Processing Pipeline 9a63bc817f9c8f9121674fdaf5c5f456 https://www.encodeproject.org/files/ENCFF504ARY/@@download/ENCFF504ARY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF402WHT bam unfiltered alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF331OEC, ENCFF643CGH, ENCFF796LKB 4767415959 ENCODE Processing Pipeline e092ca9dcab218fa31b7414f9af88a17 https://www.encodeproject.org/files/ENCFF402WHT/@@download/ENCFF402WHT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF384JQC bam unfiltered alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF441WDI, ENCFF561LOR, ENCFF807MUK 6342735547 ENCODE Processing Pipeline 5268bed135122a31870fb79b50a8e993 https://www.encodeproject.org/files/ENCFF384JQC/@@download/ENCFF384JQC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF201SSP bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF441WDI, ENCFF561LOR, ENCFF807MUK 5352132523 ENCODE Processing Pipeline 6b72a70854f6b0e70cc0de45056170c1 https://www.encodeproject.org/files/ENCFF201SSP/@@download/ENCFF201SSP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF763ECS bam unfiltered alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF441WDI, ENCFF561LOR, ENCFF643CGH 6350964893 ENCODE Processing Pipeline 77fd24be9dfce14793fced0ce2d5d2bb https://www.encodeproject.org/files/ENCFF763ECS/@@download/ENCFF763ECS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF080PMW bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF441WDI, ENCFF561LOR, ENCFF643CGH 5357071434 ENCODE Processing Pipeline 8c49a5fd9aabe924a6def2825f85df1f https://www.encodeproject.org/files/ENCFF080PMW/@@download/ENCFF080PMW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF409ZOX bigWig signal p-value ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF614FKO 1190506518 ENCODE Processing Pipeline 0e6bf5cb73a36257facd18548f72f208 https://www.encodeproject.org/files/ENCFF409ZOX/@@download/ENCFF409ZOX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF940IGZ bigWig signal p-value ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF504ARY 1367462295 ENCODE Processing Pipeline 395b5a85b11b20ab3e72a5439f31f724 https://www.encodeproject.org/files/ENCFF940IGZ/@@download/ENCFF940IGZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF255EZC bigWig signal p-value ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF080PMW 1522422924 ENCODE Processing Pipeline c9bbc853bf63c819a89343ba1b94e50f https://www.encodeproject.org/files/ENCFF255EZC/@@download/ENCFF255EZC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF364QUZ bigWig signal p-value ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF201SSP 1498586296 ENCODE Processing Pipeline 63dcce95e0aa809710546e7f415a135a https://www.encodeproject.org/files/ENCFF364QUZ/@@download/ENCFF364QUZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF723XUO bigWig signal p-value ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF080PMW, ENCFF504ARY 1811427908 ENCODE Processing Pipeline 1b68eff2bc5cb86ec6306f607df0067a https://www.encodeproject.org/files/ENCFF723XUO/@@download/ENCFF723XUO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF901VHS bigWig signal p-value ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF201SSP, ENCFF614FKO 1643105250 ENCODE Processing Pipeline c60b46777ab6ca8ff0845acaf36da291 https://www.encodeproject.org/files/ENCFF901VHS/@@download/ENCFF901VHS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF499FVG bigWig fold change over control ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF080PMW 1497412632 ENCODE Processing Pipeline aa086b965c6097052f5e81315f9d63d4 https://www.encodeproject.org/files/ENCFF499FVG/@@download/ENCFF499FVG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF625GKV bigWig fold change over control ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF201SSP 1506854054 ENCODE Processing Pipeline d9f9767f7f6e6415325fafbe9661f5be https://www.encodeproject.org/files/ENCFF625GKV/@@download/ENCFF625GKV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF315YGY bigWig fold change over control ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF614FKO 1289427963 ENCODE Processing Pipeline 0c74712df69a62d683a238b5b1378c49 https://www.encodeproject.org/files/ENCFF315YGY/@@download/ENCFF315YGY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF655VVE bigWig fold change over control ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF504ARY 1287936305 ENCODE Processing Pipeline b1f0b140ab9e763f2d30b865eb0abc3a https://www.encodeproject.org/files/ENCFF655VVE/@@download/ENCFF655VVE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF102BNJ bigBed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF914NST 11148375 ENCODE Processing Pipeline de8e4dfea0b6089bb21350a77d245b81 https://www.encodeproject.org/files/ENCFF102BNJ/@@download/ENCFF102BNJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF591HEB bigWig fold change over control ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF080PMW, ENCFF504ARY 1984834965 ENCODE Processing Pipeline 949a2d5ffc17701e1af433a5852bbdca https://www.encodeproject.org/files/ENCFF591HEB/@@download/ENCFF591HEB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF396BHS bigWig fold change over control ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF201SSP, ENCFF614FKO 1971539096 ENCODE Processing Pipeline ef3bd2a38f77a1cc0b22c2cb2c55c5b0 https://www.encodeproject.org/files/ENCFF396BHS/@@download/ENCFF396BHS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF914NST bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF080PMW 6602892 ENCODE Processing Pipeline 2662ffb9bac9cb324585721673e00528 https://www.encodeproject.org/files/ENCFF914NST/@@download/ENCFF914NST.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF975NOV bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF080PMW, ENCFF504ARY 7068342 ENCODE Processing Pipeline 7f5542b7e99d51c99003114bdf57e37d https://www.encodeproject.org/files/ENCFF975NOV/@@download/ENCFF975NOV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF327AAF bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF201SSP, ENCFF614FKO 7060573 ENCODE Processing Pipeline f28daf4bf9c18e37bdc6c8efff75b418 https://www.encodeproject.org/files/ENCFF327AAF/@@download/ENCFF327AAF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF927IWJ bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF504ARY 6302151 ENCODE Processing Pipeline af0c1506d1c99024ec4829442d53083c https://www.encodeproject.org/files/ENCFF927IWJ/@@download/ENCFF927IWJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF113KXI bigBed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF975NOV 10927105 ENCODE Processing Pipeline a84292ad91e10e5860457ed4ace18c1f https://www.encodeproject.org/files/ENCFF113KXI/@@download/ENCFF113KXI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF637FPX bigBed narrowPeak conservative idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF564LOI 92673 ENCODE Processing Pipeline 74d0dea7f56c7a655ed0c187371d1c04 https://www.encodeproject.org/files/ENCFF637FPX/@@download/ENCFF637FPX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF549WOT bigBed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF927IWJ 11226232 ENCODE Processing Pipeline 3acb08a0866dcfbd9dd8eb91cc22f370 https://www.encodeproject.org/files/ENCFF549WOT/@@download/ENCFF549WOT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF255BKX bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF614FKO 6301134 ENCODE Processing Pipeline bcf2d7e1c6c373c9d733cebba44ff756 https://www.encodeproject.org/files/ENCFF255BKX/@@download/ENCFF255BKX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF564LOI bed narrowPeak conservative idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF914NST, ENCFF927IWJ, ENCFF975NOV 16995 ENCODE Processing Pipeline 6144c2175e31f9019d27b755dd752fb5 https://www.encodeproject.org/files/ENCFF564LOI/@@download/ENCFF564LOI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF473DMT bigBed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF766ECI 11134630 ENCODE Processing Pipeline 1ac1fc63877f8d138f9645e0dd159b1b https://www.encodeproject.org/files/ENCFF473DMT/@@download/ENCFF473DMT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF766ECI bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF201SSP 6595900 ENCODE Processing Pipeline fcc6de965d8eba5d592f5d28ec1c69d9 https://www.encodeproject.org/files/ENCFF766ECI/@@download/ENCFF766ECI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF179RLX bigBed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF255BKX 11220274 ENCODE Processing Pipeline ebcc5ac194f42c9a8e4358e8c390ff40 https://www.encodeproject.org/files/ENCFF179RLX/@@download/ENCFF179RLX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF866DZB bigBed narrowPeak optimal idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF894CGQ 115075 ENCODE Processing Pipeline 162c548e1dd7c2115d7349d4b0824f6a https://www.encodeproject.org/files/ENCFF866DZB/@@download/ENCFF866DZB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF395YRF bed narrowPeak optimal idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF255BKX, ENCFF327AAF, ENCFF766ECI 27538 ENCODE Processing Pipeline d895e6078b8acaba4fffecba6ba975ad https://www.encodeproject.org/files/ENCFF395YRF/@@download/ENCFF395YRF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF894CGQ bed narrowPeak optimal idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF914NST, ENCFF927IWJ, ENCFF975NOV 28757 ENCODE Processing Pipeline 02618302de06799f87afcf8d904cf7c5 https://www.encodeproject.org/files/ENCFF894CGQ/@@download/ENCFF894CGQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF424WAU bigBed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF327AAF 10916176 ENCODE Processing Pipeline 3f82bc73cb427589752236d9f261b8fb https://www.encodeproject.org/files/ENCFF424WAU/@@download/ENCFF424WAU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF062YVH bed narrowPeak conservative idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF255BKX, ENCFF327AAF, ENCFF766ECI 16022 ENCODE Processing Pipeline 9c62481b3b493dfb70f0f14221f90281 https://www.encodeproject.org/files/ENCFF062YVH/@@download/ENCFF062YVH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF783DYL bigBed narrowPeak conservative idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF062YVH 77413 ENCODE Processing Pipeline 21847ef0424975e0b451def4c126c65b https://www.encodeproject.org/files/ENCFF783DYL/@@download/ENCFF783DYL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF355MHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF395YRF 95199 ENCODE Processing Pipeline c090ce8478e0cfdb0c33257abfe97891 https://www.encodeproject.org/files/ENCFF355MHJ/@@download/ENCFF355MHJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF231CRO fastq reads ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF082EXH 3409562358 Michael Snyder, Stanford 2e46b7b59edc3331d021c6b7f9303929 SRA:SRR5112092 https://www.encodeproject.org/files/ENCFF231CRO/@@download/ENCFF231CRO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF649OML fastq reads ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF152HSQ 1768965288 Michael Snyder, Stanford 3fc86e68ec68fe4d79a4d260c4b58646 SRA:SRR5112093 https://www.encodeproject.org/files/ENCFF649OML/@@download/ENCFF649OML.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF152HSQ fastq reads ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF649OML 1732810065 Michael Snyder, Stanford c95dd513f77cf52ca7e6b2539539b23d SRA:SRR5112093 https://www.encodeproject.org/files/ENCFF152HSQ/@@download/ENCFF152HSQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF082EXH fastq reads ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF231CRO 3489740154 Michael Snyder, Stanford 0d00b316bf1ed3d69315583ade910d62 SRA:SRR5112092 https://www.encodeproject.org/files/ENCFF082EXH/@@download/ENCFF082EXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF473QEI bam unfiltered alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF152HSQ, ENCFF649OML, ENCFF807MUK 4093666822 ENCODE Processing Pipeline 755f85f643ca77156b07e0c35055a3c3 https://www.encodeproject.org/files/ENCFF473QEI/@@download/ENCFF473QEI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF191LXL bam unfiltered alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF152HSQ, ENCFF643CGH, ENCFF649OML 4101715161 ENCODE Processing Pipeline c023a87363adcaaa8d335c7c31ae4436 https://www.encodeproject.org/files/ENCFF191LXL/@@download/ENCFF191LXL.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF490XGB bam unfiltered alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF082EXH, ENCFF231CRO, ENCFF807MUK 7529297151 ENCODE Processing Pipeline 5913bd18c0f21b6736a2a5aebeefadd4 https://www.encodeproject.org/files/ENCFF490XGB/@@download/ENCFF490XGB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF236UVU bam unfiltered alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF082EXH, ENCFF231CRO, ENCFF643CGH 7538156106 ENCODE Processing Pipeline 302f1353c83bd18d7db325b8797ecdac https://www.encodeproject.org/files/ENCFF236UVU/@@download/ENCFF236UVU.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF026WUS bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF152HSQ, ENCFF643CGH, ENCFF649OML 3536368887 ENCODE Processing Pipeline f797ca2d67b50d51022caf9f1aa0d1b7 https://www.encodeproject.org/files/ENCFF026WUS/@@download/ENCFF026WUS.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF303REI bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF152HSQ, ENCFF649OML, ENCFF807MUK 3534163333 ENCODE Processing Pipeline d0be524845f03066d2b8ac360b659b75 https://www.encodeproject.org/files/ENCFF303REI/@@download/ENCFF303REI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF739JCB bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF082EXH, ENCFF231CRO, ENCFF807MUK 6309239728 ENCODE Processing Pipeline 96fc66882595db03b7c744b3ad42591a https://www.encodeproject.org/files/ENCFF739JCB/@@download/ENCFF739JCB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF007CPG bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF082EXH, ENCFF231CRO, ENCFF643CGH 6313721636 ENCODE Processing Pipeline ee6a20e5ca309ceddba1cd58127b03d1 https://www.encodeproject.org/files/ENCFF007CPG/@@download/ENCFF007CPG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF005GRG bigWig signal p-value ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739JCB 1273841267 ENCODE Processing Pipeline 44270b7c7a506ca3dbfa284e2a768c25 https://www.encodeproject.org/files/ENCFF005GRG/@@download/ENCFF005GRG.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF936QPM bigWig signal p-value ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303REI 1225738623 ENCODE Processing Pipeline 3dced645c893494a5fab785c0879b458 https://www.encodeproject.org/files/ENCFF936QPM/@@download/ENCFF936QPM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF918RXD bigWig signal p-value ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF303REI, ENCFF739JCB 1975631435 ENCODE Processing Pipeline 15db79c4efd173ca75e2b03353189cc9 https://www.encodeproject.org/files/ENCFF918RXD/@@download/ENCFF918RXD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF073TDR bigWig fold change over control ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739JCB 1626480026 ENCODE Processing Pipeline bfa113f0d506484dd276dfac27e5630c https://www.encodeproject.org/files/ENCFF073TDR/@@download/ENCFF073TDR.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF132VVL bigWig fold change over control ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303REI 1216811898 ENCODE Processing Pipeline 669a9332c15e04ab96b0acd95e503c2f https://www.encodeproject.org/files/ENCFF132VVL/@@download/ENCFF132VVL.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF289EEL bigWig fold change over control ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF303REI, ENCFF739JCB 1984008773 ENCODE Processing Pipeline 3272148f50e2d28df54092bb7485bdb1 https://www.encodeproject.org/files/ENCFF289EEL/@@download/ENCFF289EEL.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF925BTV bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303REI 6501874 ENCODE Processing Pipeline cc503f72ec1ef95ae9733ea1bbd71d7b https://www.encodeproject.org/files/ENCFF925BTV/@@download/ENCFF925BTV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF440XJQ bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739JCB 6966236 ENCODE Processing Pipeline c64e8e89cc39e455c615d3a1aec5b5f4 https://www.encodeproject.org/files/ENCFF440XJQ/@@download/ENCFF440XJQ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF256DXV bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF303REI, ENCFF739JCB 7206619 ENCODE Processing Pipeline 94e6bd8b282e8a34f31b895c7e7dcfc9 https://www.encodeproject.org/files/ENCFF256DXV/@@download/ENCFF256DXV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF691GTA bigBed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440XJQ 13271048 ENCODE Processing Pipeline a0553e94fcc4a1f30c8ac0996c7789fd https://www.encodeproject.org/files/ENCFF691GTA/@@download/ENCFF691GTA.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF220LQP bigBed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF925BTV 13379775 ENCODE Processing Pipeline f222e16b847016972ce086fa3181607a https://www.encodeproject.org/files/ENCFF220LQP/@@download/ENCFF220LQP.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF286ZDN bigBed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF256DXV 13141150 ENCODE Processing Pipeline 29fa785f030392901a402497bcb699c2 https://www.encodeproject.org/files/ENCFF286ZDN/@@download/ENCFF286ZDN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF884TCI bed narrowPeak conservative idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF256DXV, ENCFF440XJQ, ENCFF925BTV 137854 ENCODE Processing Pipeline 0cbbec3027c8d076baaa879aba9691eb https://www.encodeproject.org/files/ENCFF884TCI/@@download/ENCFF884TCI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF519TOC bigBed narrowPeak conservative idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF884TCI 337758 ENCODE Processing Pipeline b410829b933f05c17bfdef33c4e1db92 https://www.encodeproject.org/files/ENCFF519TOC/@@download/ENCFF519TOC.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF226PFK bed narrowPeak optimal idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF256DXV, ENCFF440XJQ, ENCFF925BTV 194501 ENCODE Processing Pipeline 654d5d66b3158fea410274f8492afdf0 https://www.encodeproject.org/files/ENCFF226PFK/@@download/ENCFF226PFK.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF215EPL bigBed narrowPeak optimal idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF226PFK 436728 ENCODE Processing Pipeline b630f1f9f2635a7e042b5c007ca064d5 https://www.encodeproject.org/files/ENCFF215EPL/@@download/ENCFF215EPL.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF685PUW bigWig signal p-value ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF007CPG 1547454502 ENCODE Processing Pipeline b1e903ee338c5ed7c51f288d8fe8beb2 https://www.encodeproject.org/files/ENCFF685PUW/@@download/ENCFF685PUW.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF868TBB bigWig signal p-value ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026WUS 1065670710 ENCODE Processing Pipeline 24ef2cbb211bdb3c4883caa88ad861f9 https://www.encodeproject.org/files/ENCFF868TBB/@@download/ENCFF868TBB.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF483BVX bigWig signal p-value ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF007CPG, ENCFF026WUS 2006703736 ENCODE Processing Pipeline 9575f84ae692b30816cacb3a1482f683 https://www.encodeproject.org/files/ENCFF483BVX/@@download/ENCFF483BVX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF297PKZ bigWig fold change over control ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF007CPG 1622061915 ENCODE Processing Pipeline 4f399dd7ce0e0b0c280b52ea841e8185 https://www.encodeproject.org/files/ENCFF297PKZ/@@download/ENCFF297PKZ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF369UXK bigWig fold change over control ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026WUS 1190190048 ENCODE Processing Pipeline 39010c6a0d3a6172ef02b78e0ad3ff16 https://www.encodeproject.org/files/ENCFF369UXK/@@download/ENCFF369UXK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF788EEP bigWig fold change over control ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF007CPG, ENCFF026WUS 2018354267 ENCODE Processing Pipeline 94fae27d70f8ff9c37b3ba50a4732eb4 https://www.encodeproject.org/files/ENCFF788EEP/@@download/ENCFF788EEP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF202IKV bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF007CPG 6890619 ENCODE Processing Pipeline 4ddf27fa23c12168670c928831fdb35c https://www.encodeproject.org/files/ENCFF202IKV/@@download/ENCFF202IKV.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF931KAV bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF007CPG, ENCFF026WUS 7183971 ENCODE Processing Pipeline f3091c3bb879051d629f1db94f287024 https://www.encodeproject.org/files/ENCFF931KAV/@@download/ENCFF931KAV.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF262IIB bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026WUS 6392122 ENCODE Processing Pipeline 23dc59ac4a132aa08a89edd64508e3cd https://www.encodeproject.org/files/ENCFF262IIB/@@download/ENCFF262IIB.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF051DHD bigBed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF202IKV 13286134 ENCODE Processing Pipeline fcdebb7287c7b75c64b181859fbd101e https://www.encodeproject.org/files/ENCFF051DHD/@@download/ENCFF051DHD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF643LGE bigBed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262IIB 13388674 ENCODE Processing Pipeline c7092cf7aa1928c1f35f3a50757fefb1 https://www.encodeproject.org/files/ENCFF643LGE/@@download/ENCFF643LGE.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF837HLO bigBed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF931KAV 13154886 ENCODE Processing Pipeline eae6f88e3ca5fa89a73827ca324de422 https://www.encodeproject.org/files/ENCFF837HLO/@@download/ENCFF837HLO.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF275JQE bed narrowPeak conservative idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF202IKV, ENCFF262IIB, ENCFF419RSJ, ENCFF931KAV 137240 ENCODE Processing Pipeline e6e04fce8135ceff9ac3a7d89bc20dca https://www.encodeproject.org/files/ENCFF275JQE/@@download/ENCFF275JQE.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF878RSQ bigBed narrowPeak conservative idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF275JQE 337108 ENCODE Processing Pipeline c2c2fb5053d19692a2623f7fa240ff89 https://www.encodeproject.org/files/ENCFF878RSQ/@@download/ENCFF878RSQ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF928KRQ bed narrowPeak optimal idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF202IKV, ENCFF262IIB, ENCFF419RSJ, ENCFF931KAV 198724 ENCODE Processing Pipeline 257bceb084051c747603d141cb725387 https://www.encodeproject.org/files/ENCFF928KRQ/@@download/ENCFF928KRQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF249VOI bigBed narrowPeak optimal idr thresholded peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF928KRQ 442560 ENCODE Processing Pipeline 4f11746eb0db5eadd7b47c218556ff23 https://www.encodeproject.org/files/ENCFF249VOI/@@download/ENCFF249VOI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF989QKA bam unfiltered alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPN, ENCFF002EGL, ENCFF807MUK 4375561822 ENCODE Processing Pipeline d3d0b83ba0159f60413a32be4861e017 https://www.encodeproject.org/files/ENCFF989QKA/@@download/ENCFF989QKA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF246KNB bam unfiltered alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPU, ENCFF002EGT, ENCFF807MUK 7362021754 ENCODE Processing Pipeline db6645cf71875057d127efae3470a1e4 https://www.encodeproject.org/files/ENCFF246KNB/@@download/ENCFF246KNB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF773AFM bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG, ENCFF635JVW 1929827248 ENCODE Processing Pipeline 70f2619eba7fa9f0a7662976e6ffb0ae https://www.encodeproject.org/files/ENCFF773AFM/@@download/ENCFF773AFM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF002DPN fastq reads ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGL 1969826851 Michael Snyder, Stanford e8a62acc78a88ae23691482834a97729 SRA:SRR5111116 https://www.encodeproject.org/files/ENCFF002DPN/@@download/ENCFF002DPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002DPU fastq reads ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGT 3467981429 Michael Snyder, Stanford ce4079106ed901b9396ab64464a3fded SRA:SRR5111115 https://www.encodeproject.org/files/ENCFF002DPU/@@download/ENCFF002DPU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EGL fastq reads ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPN 1980651605 Michael Snyder, Stanford 6cfd10dbb33f48d100d7296084d2532e SRA:SRR5111116 https://www.encodeproject.org/files/ENCFF002EGL/@@download/ENCFF002EGL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EGT fastq reads ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPU 3559802482 Michael Snyder, Stanford 69811ab6c88f3c8c3f93259ce7332490 SRA:SRR5111115 https://www.encodeproject.org/files/ENCFF002EGT/@@download/ENCFF002EGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF232NKH bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 6426584 ENCODE Processing Pipeline 51d71096ec3d9a23f46ef7cdf33298c3 https://www.encodeproject.org/files/ENCFF232NKH/@@download/ENCFF232NKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF173FDW bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG, ENCFF635JVW 2143379044 ENCODE Processing Pipeline 14794ad2523f3a5b0c5399e301186ef6 https://www.encodeproject.org/files/ENCFF173FDW/@@download/ENCFF173FDW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF569FCI bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF635JVW 5472948 ENCODE Processing Pipeline 6752348e3499f5f3c9d5448f9d2a13e0 https://www.encodeproject.org/files/ENCFF569FCI/@@download/ENCFF569FCI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF727AAE bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF569FCI 11245989 ENCODE Processing Pipeline 54ccbb81712df75174ac9a13b2388413 https://www.encodeproject.org/files/ENCFF727AAE/@@download/ENCFF727AAE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF772TDR bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF232NKH 11266747 ENCODE Processing Pipeline b226d4111f71afc8fbf009ef3d0c0c13 https://www.encodeproject.org/files/ENCFF772TDR/@@download/ENCFF772TDR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF663REE bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG, ENCFF635JVW 6991795 ENCODE Processing Pipeline c70efb8a0c422d4f435bc6ab6f838315 https://www.encodeproject.org/files/ENCFF663REE/@@download/ENCFF663REE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF844WXL bed narrowPeak conservative idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF232NKH, ENCFF569FCI, ENCFF663REE 22117 ENCODE Processing Pipeline 53c9c7a845104412bb04e3ebf6c8668d https://www.encodeproject.org/files/ENCFF844WXL/@@download/ENCFF844WXL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF836HHL bed narrowPeak optimal idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF232NKH, ENCFF569FCI, ENCFF663REE 48324 ENCODE Processing Pipeline 8eea9b37a3808a81eaacdcb2652d7c12 https://www.encodeproject.org/files/ENCFF836HHL/@@download/ENCFF836HHL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF166TXI bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF663REE 11219034 ENCODE Processing Pipeline 843a5c0e38adb8d7776ec04247e4242d https://www.encodeproject.org/files/ENCFF166TXI/@@download/ENCFF166TXI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF861MRJ bigBed narrowPeak conservative idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF844WXL 101323 ENCODE Processing Pipeline fa1994be7b342fed1e2e9dce795a1225 https://www.encodeproject.org/files/ENCFF861MRJ/@@download/ENCFF861MRJ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF637VXU bigBed narrowPeak optimal idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF836HHL 146878 ENCODE Processing Pipeline 181096e449098e4efd178b488ec8e1ff https://www.encodeproject.org/files/ENCFF637VXU/@@download/ENCFF637VXU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF093CYD bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPU, ENCFF002EGT, ENCFF807MUK 5898559941 ENCODE Processing Pipeline f53341f7063fa2ee4481bd626f06646c https://www.encodeproject.org/files/ENCFF093CYD/@@download/ENCFF093CYD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF635JVW bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPN, ENCFF002EGL, ENCFF807MUK 3786369662 ENCODE Processing Pipeline 613a9fcb99dde50ad4ab644b88e5feb6 https://www.encodeproject.org/files/ENCFF635JVW/@@download/ENCFF635JVW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF387RTA bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF635JVW 907382676 ENCODE Processing Pipeline bef9c483f93f3b4364113060700b4627 https://www.encodeproject.org/files/ENCFF387RTA/@@download/ENCFF387RTA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF532OFK bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 1697896836 ENCODE Processing Pipeline 27091dae1a1c38a03a81bb0dca0f3f78 https://www.encodeproject.org/files/ENCFF532OFK/@@download/ENCFF532OFK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF994DZH bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG, ENCFF635JVW 1964286033 ENCODE Processing Pipeline 6775a7d0be6d0c44adebeaac7d9d982a https://www.encodeproject.org/files/ENCFF994DZH/@@download/ENCFF994DZH.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF833HGP bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF635JVW 1017932248 ENCODE Processing Pipeline d3ea319c2f402f004996c2f12a563568 https://www.encodeproject.org/files/ENCFF833HGP/@@download/ENCFF833HGP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF567BOK bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 1795901070 ENCODE Processing Pipeline aeb9ec9bcadf5baeda631dd44a782ca2 https://www.encodeproject.org/files/ENCFF567BOK/@@download/ENCFF567BOK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF526HQD bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG, ENCFF635JVW 2181538285 ENCODE Processing Pipeline 2c0c695ab9478de507b90a75b1db3de5 https://www.encodeproject.org/files/ENCFF526HQD/@@download/ENCFF526HQD.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF879DVA bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF635JVW 5669364 ENCODE Processing Pipeline e3616404aac8fc18f1d8368efb993956 https://www.encodeproject.org/files/ENCFF879DVA/@@download/ENCFF879DVA.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF668OIR bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG, ENCFF635JVW 7074261 ENCODE Processing Pipeline 7c9b347eb67e70683a340958b8e6eb8b https://www.encodeproject.org/files/ENCFF668OIR/@@download/ENCFF668OIR.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF448DHQ bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF879DVA 11303985 ENCODE Processing Pipeline be47d5b3d65386012338e4b9acd1f5b5 https://www.encodeproject.org/files/ENCFF448DHQ/@@download/ENCFF448DHQ.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF666VFP bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 6571503 ENCODE Processing Pipeline 6573094f2ef543e6777f4d0454c925b9 https://www.encodeproject.org/files/ENCFF666VFP/@@download/ENCFF666VFP.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF361RPN bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF666VFP 11273040 ENCODE Processing Pipeline fd92cfa3dfa03d3b6019502d6cb94ee7 https://www.encodeproject.org/files/ENCFF361RPN/@@download/ENCFF361RPN.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF142IQO bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF668OIR 11218927 ENCODE Processing Pipeline 40b0644d878eff40b66ed0732e95f2ef https://www.encodeproject.org/files/ENCFF142IQO/@@download/ENCFF142IQO.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF037FUA bam unfiltered alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPN, ENCFF002EGL, ENCFF643CGH 4383962670 ENCODE Processing Pipeline c643c9395157d99138d03d996cd3579e https://www.encodeproject.org/files/ENCFF037FUA/@@download/ENCFF037FUA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF452ZIX bam unfiltered alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPU, ENCFF002EGT, ENCFF643CGH 7370711507 ENCODE Processing Pipeline d8b87f978d4a9e6e24712516f00b22b0 https://www.encodeproject.org/files/ENCFF452ZIX/@@download/ENCFF452ZIX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF752IEK bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPN, ENCFF002EGL, ENCFF643CGH 3788992563 ENCODE Processing Pipeline 948e665e639430c7262d2291f2a3c899 https://www.encodeproject.org/files/ENCFF752IEK/@@download/ENCFF752IEK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF860ZZO bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPU, ENCFF002EGT, ENCFF643CGH 5904390026 ENCODE Processing Pipeline 14fd433509d3d1c5b6e11971c0787fa5 https://www.encodeproject.org/files/ENCFF860ZZO/@@download/ENCFF860ZZO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF064LGC bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF752IEK 1072790070 ENCODE Processing Pipeline 5dcab0918bb371306200d904bee4c4fa https://www.encodeproject.org/files/ENCFF064LGC/@@download/ENCFF064LGC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF876XKK bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF860ZZO 1600389951 ENCODE Processing Pipeline 06c16344216e508203c8e2b91dd0c7a4 https://www.encodeproject.org/files/ENCFF876XKK/@@download/ENCFF876XKK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF427ADY bigWig signal p-value ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF752IEK, ENCFF860ZZO 1833966245 ENCODE Processing Pipeline 5ab0ca3c3b0ec6911fe265190322ca30 https://www.encodeproject.org/files/ENCFF427ADY/@@download/ENCFF427ADY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF074SQK bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF752IEK 1015836506 ENCODE Processing Pipeline 252f44d52606e1e33c2b09bae31a8490 https://www.encodeproject.org/files/ENCFF074SQK/@@download/ENCFF074SQK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF849BDX bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF860ZZO 1800898315 ENCODE Processing Pipeline 56c0b9d84ea1d00829b41a2e53e03c48 https://www.encodeproject.org/files/ENCFF849BDX/@@download/ENCFF849BDX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF121SET bigWig fold change over control ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF752IEK, ENCFF860ZZO 2144541684 ENCODE Processing Pipeline 3f8efa2397c45cbe4c276808273fcb63 https://www.encodeproject.org/files/ENCFF121SET/@@download/ENCFF121SET.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF021XCA bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF752IEK 5476418 ENCODE Processing Pipeline ae5b398ec7e10f7b1ff3e75364bcafbd https://www.encodeproject.org/files/ENCFF021XCA/@@download/ENCFF021XCA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF400QFQ bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF426RDP, ENCFF860ZZO 6430128 ENCODE Processing Pipeline 0b8332763d453980e37f966a52b12a60 https://www.encodeproject.org/files/ENCFF400QFQ/@@download/ENCFF400QFQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF281YRG bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF752IEK, ENCFF860ZZO 6998593 ENCODE Processing Pipeline f87f5425a55c76a5dee86f1d978558f6 https://www.encodeproject.org/files/ENCFF281YRG/@@download/ENCFF281YRG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF465PRD bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF021XCA 11268166 ENCODE Processing Pipeline f83f043a5759290b3752c2debd5f06f3 https://www.encodeproject.org/files/ENCFF465PRD/@@download/ENCFF465PRD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF945XXA bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF400QFQ 11283320 ENCODE Processing Pipeline 5fd1b7761007d7177f80960feb0ea734 https://www.encodeproject.org/files/ENCFF945XXA/@@download/ENCFF945XXA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF106AZB bigBed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF281YRG 11238133 ENCODE Processing Pipeline 3f7ab9dacf05c7ecc8684f7ee89192da https://www.encodeproject.org/files/ENCFF106AZB/@@download/ENCFF106AZB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF487OYJ bed narrowPeak conservative idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF021XCA, ENCFF281YRG, ENCFF400QFQ, ENCFF419RSJ 22660 ENCODE Processing Pipeline 083b3b0691f2ee620665235d1a4e9cb2 https://www.encodeproject.org/files/ENCFF487OYJ/@@download/ENCFF487OYJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF153BZS bigBed narrowPeak conservative idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF487OYJ 104360 ENCODE Processing Pipeline 118e8f87ef0e8d28a112c6f7c0214bfb https://www.encodeproject.org/files/ENCFF153BZS/@@download/ENCFF153BZS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF708ACK bed narrowPeak optimal idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF021XCA, ENCFF281YRG, ENCFF400QFQ, ENCFF419RSJ 28635 ENCODE Processing Pipeline 91344c66ac8959af4fef5ba1110aa859 https://www.encodeproject.org/files/ENCFF708ACK/@@download/ENCFF708ACK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF382WBA bigBed narrowPeak optimal idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF708ACK 115934 ENCODE Processing Pipeline cea000d934f5e831cda62d79b37a6b50 https://www.encodeproject.org/files/ENCFF382WBA/@@download/ENCFF382WBA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF688CIA bed narrowPeak optimal idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF666VFP, ENCFF668OIR, ENCFF879DVA 40206 ENCODE Processing Pipeline f32211e5a58f506e41c69c12a603bac2 https://www.encodeproject.org/files/ENCFF688CIA/@@download/ENCFF688CIA.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF273IZO bigBed narrowPeak optimal idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF688CIA 115836 ENCODE Processing Pipeline c7329ba373e2a437e414de0094427d26 https://www.encodeproject.org/files/ENCFF273IZO/@@download/ENCFF273IZO.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF512RVD bed narrowPeak conservative idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF666VFP, ENCFF668OIR, ENCFF879DVA 18193 ENCODE Processing Pipeline 51d3e9b5ae2528d071f0079f0a0803fd https://www.encodeproject.org/files/ENCFF512RVD/@@download/ENCFF512RVD.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF311RYH bigBed narrowPeak conservative idr thresholded peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF512RVD 82466 ENCODE Processing Pipeline 581fecfd1218c06a1deba594f6c89e93 https://www.encodeproject.org/files/ENCFF311RYH/@@download/ENCFF311RYH.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF310ZUA bam unfiltered alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF145TXO, ENCFF793WFY, ENCFF807MUK 4546315209 ENCODE Processing Pipeline d730246e80b69127b708454ebd6c9b2f https://www.encodeproject.org/files/ENCFF310ZUA/@@download/ENCFF310ZUA.bam hg19 released mild to moderate bottlenecking ENCFF187DHE bam unfiltered alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF768SQO, ENCFF807MUK, ENCFF998YDA 4550423085 ENCODE Processing Pipeline 8fac521595cc350955cd156ebc236670 https://www.encodeproject.org/files/ENCFF187DHE/@@download/ENCFF187DHE.bam hg19 released mild to moderate bottlenecking ENCFF145TXO fastq reads ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF793WFY 2140101678 Michael Snyder, Stanford dfe11503168adfdec3506459f75cdc2e SRA:SRR5111135 https://www.encodeproject.org/files/ENCFF145TXO/@@download/ENCFF145TXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF768SQO fastq reads ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF998YDA 2171470736 Michael Snyder, Stanford 579adbea5ed9d050c5536c737967c74f SRA:SRR5111136 https://www.encodeproject.org/files/ENCFF768SQO/@@download/ENCFF768SQO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF998YDA fastq reads ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF768SQO 2119223034 Michael Snyder, Stanford 58da3268a0a894099760909c469edff2 SRA:SRR5111136 https://www.encodeproject.org/files/ENCFF998YDA/@@download/ENCFF998YDA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF793WFY fastq reads ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF145TXO 2109388797 Michael Snyder, Stanford c56e6e3079657100f3c18304878c387a SRA:SRR5111135 https://www.encodeproject.org/files/ENCFF793WFY/@@download/ENCFF793WFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF389WLJ bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF145TXO, ENCFF793WFY, ENCFF807MUK 3627302095 ENCODE Processing Pipeline fcb123f1d333645bc4d7beca10f74bfa https://www.encodeproject.org/files/ENCFF389WLJ/@@download/ENCFF389WLJ.bam hg19 released mild to moderate bottlenecking ENCFF341UEE bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF768SQO, ENCFF807MUK, ENCFF998YDA 3762554628 ENCODE Processing Pipeline 8d41f97f617777e4f7b89a3f07c5ac96 https://www.encodeproject.org/files/ENCFF341UEE/@@download/ENCFF341UEE.bam hg19 released mild to moderate bottlenecking ENCFF238PAZ bigWig signal p-value ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF389WLJ, ENCFF581ZJL 1049843032 ENCODE Processing Pipeline 0d67a4373f6a0d6595b00c85418dd90f https://www.encodeproject.org/files/ENCFF238PAZ/@@download/ENCFF238PAZ.bigWig hg19 released mild to moderate bottlenecking ENCFF839APB bigWig signal p-value ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF341UEE 1021646894 ENCODE Processing Pipeline 1743f6114a66a50ceba824241941ca46 https://www.encodeproject.org/files/ENCFF839APB/@@download/ENCFF839APB.bigWig hg19 released mild to moderate bottlenecking ENCFF438KVV bigWig signal p-value ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF341UEE, ENCFF389WLJ, ENCFF581ZJL 1844671966 ENCODE Processing Pipeline 6b9104a76d6d3f21602170f257d7cf9e https://www.encodeproject.org/files/ENCFF438KVV/@@download/ENCFF438KVV.bigWig hg19 released mild to moderate bottlenecking ENCFF370HGZ bigWig fold change over control ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF341UEE 1033997917 ENCODE Processing Pipeline d2aba3e54e401064360055320e64cbd5 https://www.encodeproject.org/files/ENCFF370HGZ/@@download/ENCFF370HGZ.bigWig hg19 released mild to moderate bottlenecking ENCFF359PRQ bigWig fold change over control ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF389WLJ, ENCFF581ZJL 1077677137 ENCODE Processing Pipeline fac537baa0e1390030a7e43b47731ffe https://www.encodeproject.org/files/ENCFF359PRQ/@@download/ENCFF359PRQ.bigWig hg19 released mild to moderate bottlenecking ENCFF617UEO bigWig fold change over control ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF341UEE, ENCFF389WLJ, ENCFF581ZJL 1953372130 ENCODE Processing Pipeline 566ce0b5487586638304a7a68c656f25 https://www.encodeproject.org/files/ENCFF617UEO/@@download/ENCFF617UEO.bigWig hg19 released mild to moderate bottlenecking ENCFF793XCW bam unfiltered alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF768SQO, ENCFF998YDA 4553090021 ENCODE Processing Pipeline 7bc9f48636572d30b014027b3f49a866 https://www.encodeproject.org/files/ENCFF793XCW/@@download/ENCFF793XCW.bam GRCh38 released mild to moderate bottlenecking ENCFF829RRK bam unfiltered alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF145TXO, ENCFF643CGH, ENCFF793WFY 4549703394 ENCODE Processing Pipeline 4ad33653d19c7d74fdb6e050e2d2574e https://www.encodeproject.org/files/ENCFF829RRK/@@download/ENCFF829RRK.bam GRCh38 released mild to moderate bottlenecking ENCFF525CPA bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF768SQO, ENCFF998YDA 3765084051 ENCODE Processing Pipeline 78ef28c0fb9c77ca9b765122a94a632f https://www.encodeproject.org/files/ENCFF525CPA/@@download/ENCFF525CPA.bam GRCh38 released mild to moderate bottlenecking ENCFF695TZQ bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF145TXO, ENCFF643CGH, ENCFF793WFY 3629065324 ENCODE Processing Pipeline 50aaf44ca4c9e6cb87f3d748809d1c1b https://www.encodeproject.org/files/ENCFF695TZQ/@@download/ENCFF695TZQ.bam GRCh38 released mild to moderate bottlenecking ENCFF624LLK bigWig signal p-value ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF695TZQ, ENCFF910IKB 1048372836 ENCODE Processing Pipeline e734555dc25fa4f43229e365a1bfa887 https://www.encodeproject.org/files/ENCFF624LLK/@@download/ENCFF624LLK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF259XLQ bigWig signal p-value ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF525CPA 894363869 ENCODE Processing Pipeline e10393df7669906a86827f9a13fecfe0 https://www.encodeproject.org/files/ENCFF259XLQ/@@download/ENCFF259XLQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF573DEO bigWig signal p-value ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF525CPA, ENCFF695TZQ, ENCFF910IKB 1641671126 ENCODE Processing Pipeline 46ccbcb080115260eb39558f68f717fc https://www.encodeproject.org/files/ENCFF573DEO/@@download/ENCFF573DEO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF397LEA bigWig fold change over control ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF695TZQ, ENCFF910IKB 1098514527 ENCODE Processing Pipeline 9a390b16eb71a7cc7018a18257f7b245 https://www.encodeproject.org/files/ENCFF397LEA/@@download/ENCFF397LEA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF286BXD bigWig fold change over control ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF525CPA 1043121978 ENCODE Processing Pipeline 2d41260d5a2d54a2e43e0b8fe4ca3aec https://www.encodeproject.org/files/ENCFF286BXD/@@download/ENCFF286BXD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF019EEM bigWig fold change over control ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF525CPA, ENCFF695TZQ, ENCFF910IKB 1955028573 ENCODE Processing Pipeline 898fce6c056bb8a645cecc618201fff6 https://www.encodeproject.org/files/ENCFF019EEM/@@download/ENCFF019EEM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF440AAA bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF695TZQ, ENCFF910IKB 6578157 ENCODE Processing Pipeline a1889128d98db837709410a30eb86996 https://www.encodeproject.org/files/ENCFF440AAA/@@download/ENCFF440AAA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF992YKP bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF525CPA 6541996 ENCODE Processing Pipeline db6221ae776c3ed906185381d4b7036d https://www.encodeproject.org/files/ENCFF992YKP/@@download/ENCFF992YKP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF717WWT bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF525CPA, ENCFF695TZQ, ENCFF910IKB 7160052 ENCODE Processing Pipeline 5aa9f46949978b816c0f32a06fa1539c https://www.encodeproject.org/files/ENCFF717WWT/@@download/ENCFF717WWT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF613OXL bigBed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF440AAA 13443233 ENCODE Processing Pipeline 55c4cb5fc07b98982041ebcbc01e99c1 https://www.encodeproject.org/files/ENCFF613OXL/@@download/ENCFF613OXL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF123PYM bigBed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF992YKP 13452212 ENCODE Processing Pipeline 701c2693e8732d4d46339e033b23af83 https://www.encodeproject.org/files/ENCFF123PYM/@@download/ENCFF123PYM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF250YLK bigBed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF717WWT 13412233 ENCODE Processing Pipeline 45fcee2734af70584d0930de1ebfc7da https://www.encodeproject.org/files/ENCFF250YLK/@@download/ENCFF250YLK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF412EVD bed narrowPeak conservative idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF440AAA, ENCFF717WWT, ENCFF992YKP 402895 ENCODE Processing Pipeline 7c7740c265c0e8c3f8717c79afaf8e3d https://www.encodeproject.org/files/ENCFF412EVD/@@download/ENCFF412EVD.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF410IFP bigBed narrowPeak conservative idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF412EVD 749987 ENCODE Processing Pipeline 126241f6eabbb0d9bd0abfeaff166130 https://www.encodeproject.org/files/ENCFF410IFP/@@download/ENCFF410IFP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF475LFH bed narrowPeak optimal idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF440AAA, ENCFF717WWT, ENCFF992YKP 501763 ENCODE Processing Pipeline 57a4f9c69022e7387283f16da692f152 https://www.encodeproject.org/files/ENCFF475LFH/@@download/ENCFF475LFH.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF016VHT bigBed narrowPeak optimal idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF475LFH 884056 ENCODE Processing Pipeline d14a053dde0bb38534de719af2cc2407 https://www.encodeproject.org/files/ENCFF016VHT/@@download/ENCFF016VHT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF106RGY bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF341UEE 6541828 ENCODE Processing Pipeline e6f5f66dd80e240ea9a45a7df2ae5940 https://www.encodeproject.org/files/ENCFF106RGY/@@download/ENCFF106RGY.bed.gz hg19 released mild to moderate bottlenecking ENCFF435YKY bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF341UEE, ENCFF389WLJ, ENCFF581ZJL 7138907 ENCODE Processing Pipeline ff67e223112fba5e51c5d05cf2e602ef https://www.encodeproject.org/files/ENCFF435YKY/@@download/ENCFF435YKY.bed.gz hg19 released mild to moderate bottlenecking ENCFF661CJD bed narrowPeak conservative idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF106RGY, ENCFF435YKY, ENCFF808YAS 395733 ENCODE Processing Pipeline 575cd73c45f4d212b331865809bcc149 https://www.encodeproject.org/files/ENCFF661CJD/@@download/ENCFF661CJD.bed.gz hg19 released mild to moderate bottlenecking ENCFF051RKU bigBed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF808YAS 13444709 ENCODE Processing Pipeline efcafc33cb7e60ee814b13c04672714b https://www.encodeproject.org/files/ENCFF051RKU/@@download/ENCFF051RKU.bigBed hg19 released mild to moderate bottlenecking ENCFF808YAS bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF389WLJ, ENCFF581ZJL 6588440 ENCODE Processing Pipeline b7d7d11be5c02c6de486c7485eeaf585 https://www.encodeproject.org/files/ENCFF808YAS/@@download/ENCFF808YAS.bed.gz hg19 released mild to moderate bottlenecking ENCFF384QCN bigBed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF106RGY 13491494 ENCODE Processing Pipeline cd50cccc28060a377ebdcd1c2822423f https://www.encodeproject.org/files/ENCFF384QCN/@@download/ENCFF384QCN.bigBed hg19 released mild to moderate bottlenecking ENCFF902IJP bigBed narrowPeak optimal idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF284LRP 867948 ENCODE Processing Pipeline fb9777347e15e3f0af383905943faaba https://www.encodeproject.org/files/ENCFF902IJP/@@download/ENCFF902IJP.bigBed hg19 released mild to moderate bottlenecking ENCFF186YFH bigBed narrowPeak conservative idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF661CJD 737817 ENCODE Processing Pipeline 5580dda37513e26bc09f9897e8a6fabd https://www.encodeproject.org/files/ENCFF186YFH/@@download/ENCFF186YFH.bigBed hg19 released mild to moderate bottlenecking ENCFF928UEE bigBed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF435YKY 13378036 ENCODE Processing Pipeline 9c4d3a8248e7abca2a3f092b79e87a7c https://www.encodeproject.org/files/ENCFF928UEE/@@download/ENCFF928UEE.bigBed hg19 released mild to moderate bottlenecking ENCFF284LRP bed narrowPeak optimal idr thresholded peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF106RGY, ENCFF435YKY, ENCFF808YAS 490842 ENCODE Processing Pipeline 3c526cb3b4923a306e8fa5fbc8fc4dd0 https://www.encodeproject.org/files/ENCFF284LRP/@@download/ENCFF284LRP.bed.gz hg19 released mild to moderate bottlenecking ENCFF001YXD fastq reads ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 1 36 single-ended 916896417 Michael Snyder, Stanford 40121f17a68429da278c86fe0e4f6bd0 SRA:SRR5111098 https://www.encodeproject.org/files/ENCFF001YXD/@@download/ENCFF001YXD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length ENCFF001YXE fastq reads ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 1 36 single-ended 866722176 Michael Snyder, Stanford dc2a3bdad95543bac646576086074cd8 SRA:SRR5111097 https://www.encodeproject.org/files/ENCFF001YXE/@@download/ENCFF001YXE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length ENCFF852JBO bam unfiltered alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXD, ENCFF807MUK 1128889183 ENCODE Processing Pipeline ddefb404677e53e7f3ef76964eb46a21 https://www.encodeproject.org/files/ENCFF852JBO/@@download/ENCFF852JBO.bam hg19 released low read length ENCFF584NBR bam unfiltered alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXE, ENCFF807MUK 1249386766 ENCODE Processing Pipeline 41894a6044f382df23b4b0539f5d5a7f https://www.encodeproject.org/files/ENCFF584NBR/@@download/ENCFF584NBR.bam hg19 released low read length ENCFF945YJE bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 627597368 ENCODE Processing Pipeline 957be381181ae3756195dc277af26e47 https://www.encodeproject.org/files/ENCFF945YJE/@@download/ENCFF945YJE.bigWig hg19 released low read length ENCFF079TFC bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 457838709 ENCODE Processing Pipeline b452f092464fd40d20245b92b84f8e7e https://www.encodeproject.org/files/ENCFF079TFC/@@download/ENCFF079TFC.bigWig hg19 released low read length ENCFF071DMT bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF823OXL, ENCFF863VMN, ENCFF993IXQ 1104576014 ENCODE Processing Pipeline 113142fc94348746548ce2959a8a7987 https://www.encodeproject.org/files/ENCFF071DMT/@@download/ENCFF071DMT.bigWig hg19 released low read length ENCFF313BLC bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 4894675 ENCODE Processing Pipeline 8f84cbba7c25553b0ad77c3c82f8db38 https://www.encodeproject.org/files/ENCFF313BLC/@@download/ENCFF313BLC.bed.gz hg19 released low read length ENCFF510WJW bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF823OXL, ENCFF863VMN, ENCFF993IXQ 1061069376 ENCODE Processing Pipeline 2cc700df00da2dccbd842aeec766e43d https://www.encodeproject.org/files/ENCFF510WJW/@@download/ENCFF510WJW.bigWig hg19 released low read length ENCFF037XHM bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF823OXL, ENCFF863VMN, ENCFF993IXQ 6244964 ENCODE Processing Pipeline 85335401a5ceface2277f58cd5e32eb6 https://www.encodeproject.org/files/ENCFF037XHM/@@download/ENCFF037XHM.bed.gz hg19 released low read length ENCFF147SMY bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 5085112 ENCODE Processing Pipeline 204e1eba5fef56936b074b620d7544ef https://www.encodeproject.org/files/ENCFF147SMY/@@download/ENCFF147SMY.bed.gz hg19 released low read length ENCFF713KGJ bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF313BLC 11118341 ENCODE Processing Pipeline 78862079da27269966511842a4f64b99 https://www.encodeproject.org/files/ENCFF713KGJ/@@download/ENCFF713KGJ.bigBed hg19 released low read length ENCFF685CIM bigBed narrowPeak conservative idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF145TSQ 509560 ENCODE Processing Pipeline af7c5510ffaba1d5abea803d67e78ea1 https://www.encodeproject.org/files/ENCFF685CIM/@@download/ENCFF685CIM.bigBed hg19 released low read length ENCFF394GFS bigBed narrowPeak optimal idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF324TBP 566666 ENCODE Processing Pipeline ed03cf0e9d1493af331dc0ff4e47dbe6 https://www.encodeproject.org/files/ENCFF394GFS/@@download/ENCFF394GFS.bigBed hg19 released low read length ENCFF950RHN bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF037XHM 13597205 ENCODE Processing Pipeline ab36ae51ee044bfdb507a52f0fc2daed https://www.encodeproject.org/files/ENCFF950RHN/@@download/ENCFF950RHN.bigBed hg19 released low read length ENCFF145TSQ bed narrowPeak conservative idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF037XHM, ENCFF147SMY, ENCFF313BLC 241879 ENCODE Processing Pipeline f452b2323b923944d79ff970f8dce2cc https://www.encodeproject.org/files/ENCFF145TSQ/@@download/ENCFF145TSQ.bed.gz hg19 released low read length ENCFF278EZR bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF147SMY 11031970 ENCODE Processing Pipeline 0c7a8c26dd3e59f45ec18d13ec778e56 https://www.encodeproject.org/files/ENCFF278EZR/@@download/ENCFF278EZR.bigBed hg19 released low read length ENCFF324TBP bed narrowPeak optimal idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF037XHM, ENCFF147SMY, ENCFF313BLC 281422 ENCODE Processing Pipeline 5c67758efa36fc46a013b34d27c7fd43 https://www.encodeproject.org/files/ENCFF324TBP/@@download/ENCFF324TBP.bed.gz hg19 released low read length ENCFF993IXQ bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXD, ENCFF807MUK 795757913 ENCODE Processing Pipeline 580fad63b75b45f99aa3e199253e3cb5 https://www.encodeproject.org/files/ENCFF993IXQ/@@download/ENCFF993IXQ.bam hg19 released low read length ENCFF823OXL bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXE, ENCFF807MUK 848780028 ENCODE Processing Pipeline b48c11d2ef177ff626657763ad0f9405 https://www.encodeproject.org/files/ENCFF823OXL/@@download/ENCFF823OXL.bam hg19 released low read length ENCFF808ZDO bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 622041005 ENCODE Processing Pipeline 9816e9704e6e2a0988c0fa339e017c23 https://www.encodeproject.org/files/ENCFF808ZDO/@@download/ENCFF808ZDO.bigWig hg19 archived low read length ENCFF393XON bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 490958579 ENCODE Processing Pipeline c7016cc7e196e8958fee0ce006b51e77 https://www.encodeproject.org/files/ENCFF393XON/@@download/ENCFF393XON.bigWig hg19 released low read length ENCFF311ONX bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF823OXL, ENCFF863VMN, ENCFF993IXQ 1081399868 ENCODE Processing Pipeline 35e8fa98ac55097c8c541d07b8e5305b https://www.encodeproject.org/files/ENCFF311ONX/@@download/ENCFF311ONX.bigWig hg19 archived low read length ENCFF977SJP bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 456441686 ENCODE Processing Pipeline 4209176447a2581f78ec316ace94254d https://www.encodeproject.org/files/ENCFF977SJP/@@download/ENCFF977SJP.bigWig hg19 archived low read length ENCFF956STZ bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 466459909 ENCODE Processing Pipeline 1a366895ca3ec34ab827fd05f7366877 https://www.encodeproject.org/files/ENCFF956STZ/@@download/ENCFF956STZ.bigWig hg19 released low read length ENCFF385RJP bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF823OXL, ENCFF863VMN, ENCFF993IXQ 1033170428 ENCODE Processing Pipeline ad173f19f814be6103d44b1642283519 https://www.encodeproject.org/files/ENCFF385RJP/@@download/ENCFF385RJP.bigWig hg19 archived low read length ENCFF483GPY bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 5288651 ENCODE Processing Pipeline 7a518edfff897def63a39821aed21c96 https://www.encodeproject.org/files/ENCFF483GPY/@@download/ENCFF483GPY.bed.gz hg19 archived low read length ENCFF351HRN bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 5154854 ENCODE Processing Pipeline 1f04162ac8572c6db11a261c832242b5 https://www.encodeproject.org/files/ENCFF351HRN/@@download/ENCFF351HRN.bed.gz hg19 archived low read length ENCFF152BVN bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF483GPY 11145828 ENCODE Processing Pipeline 7b8ea22170374f82e5e395d7721bf4ee https://www.encodeproject.org/files/ENCFF152BVN/@@download/ENCFF152BVN.bigBed hg19 archived low read length ENCFF350PSE bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF823OXL, ENCFF863VMN, ENCFF993IXQ 6381221 ENCODE Processing Pipeline 17f083297857192d6dc9f51d2ffa8d03 https://www.encodeproject.org/files/ENCFF350PSE/@@download/ENCFF350PSE.bed.gz hg19 archived low read length ENCFF743DQL bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF351HRN 11252770 ENCODE Processing Pipeline 8196ea96107103b98837e497347537c5 https://www.encodeproject.org/files/ENCFF743DQL/@@download/ENCFF743DQL.bigBed hg19 archived low read length ENCFF712ETS bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF350PSE 13608631 ENCODE Processing Pipeline 1888238e274ef91d8f1243e430fcd2e3 https://www.encodeproject.org/files/ENCFF712ETS/@@download/ENCFF712ETS.bigBed hg19 archived low read length ENCFF601NME bam unfiltered alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXE, ENCFF643CGH 1254947870 ENCODE Processing Pipeline 64f59e96df8ee9886fdaefe1ccd89edf https://www.encodeproject.org/files/ENCFF601NME/@@download/ENCFF601NME.bam GRCh38 released low read length ENCFF015RFH bam unfiltered alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXD, ENCFF643CGH 1133844605 ENCODE Processing Pipeline e985a16b13a783cc6d3f3d7bbd17fd38 https://www.encodeproject.org/files/ENCFF015RFH/@@download/ENCFF015RFH.bam GRCh38 released low read length ENCFF063NKS bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXE, ENCFF643CGH 848425799 ENCODE Processing Pipeline 879f91cba2237ed6b282250230d01cce https://www.encodeproject.org/files/ENCFF063NKS/@@download/ENCFF063NKS.bam GRCh38 released low read length ENCFF114WOS bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXD, ENCFF643CGH 795307127 ENCODE Processing Pipeline 9dd36b3a063a103d7e9a41b05546b507 https://www.encodeproject.org/files/ENCFF114WOS/@@download/ENCFF114WOS.bam GRCh38 released low read length ENCFF986NMB bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF114WOS, ENCFF511RLN 585311526 ENCODE Processing Pipeline 0c158e5b5f8187ccebc3fc286990168f https://www.encodeproject.org/files/ENCFF986NMB/@@download/ENCFF986NMB.bigWig GRCh38 released low read length ENCFF968UKC bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF063NKS, ENCFF536CTV 477663303 ENCODE Processing Pipeline 03cde1a8e8093cf5eceff5f3715ab8c7 https://www.encodeproject.org/files/ENCFF968UKC/@@download/ENCFF968UKC.bigWig GRCh38 released low read length ENCFF151DKE bigWig signal p-value ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF063NKS, ENCFF114WOS, ENCFF511RLN, ENCFF536CTV 971071419 ENCODE Processing Pipeline 0fc94946ba87ac481353b8c78e6ff677 https://www.encodeproject.org/files/ENCFF151DKE/@@download/ENCFF151DKE.bigWig GRCh38 released low read length ENCFF687QJQ bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF114WOS, ENCFF511RLN 475454257 ENCODE Processing Pipeline 901eb2a3d0defcd4e6b90a11946c2eed https://www.encodeproject.org/files/ENCFF687QJQ/@@download/ENCFF687QJQ.bigWig GRCh38 released low read length ENCFF714CHI bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF063NKS, ENCFF536CTV 465978366 ENCODE Processing Pipeline c844fe49bde37c1e7279ece0244d620c https://www.encodeproject.org/files/ENCFF714CHI/@@download/ENCFF714CHI.bigWig GRCh38 released low read length ENCFF389WJM bigWig fold change over control ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF063NKS, ENCFF114WOS, ENCFF511RLN, ENCFF536CTV 1064716459 ENCODE Processing Pipeline 4740e48c0793f9d34d370b20d1d6e1b1 https://www.encodeproject.org/files/ENCFF389WJM/@@download/ENCFF389WJM.bigWig GRCh38 released low read length ENCFF391MSX bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF114WOS, ENCFF511RLN 4926184 ENCODE Processing Pipeline 1ce58d145ee3d71b3b4582cd582b379b https://www.encodeproject.org/files/ENCFF391MSX/@@download/ENCFF391MSX.bed.gz GRCh38 released low read length ENCFF510ELM bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF063NKS, ENCFF536CTV 5038162 ENCODE Processing Pipeline 0f3d167ab9ff3ea5c9c1f6cdcddf311a https://www.encodeproject.org/files/ENCFF510ELM/@@download/ENCFF510ELM.bed.gz GRCh38 released low read length ENCFF419VDV bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF063NKS, ENCFF114WOS, ENCFF511RLN, ENCFF536CTV 6245502 ENCODE Processing Pipeline f99827a4213332fac73a37cf5a074ec7 https://www.encodeproject.org/files/ENCFF419VDV/@@download/ENCFF419VDV.bed.gz GRCh38 released low read length ENCFF288VOH bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF391MSX 11163784 ENCODE Processing Pipeline 727f14da8c48fca9b9bf94831e61159f https://www.encodeproject.org/files/ENCFF288VOH/@@download/ENCFF288VOH.bigBed GRCh38 released low read length ENCFF797YAV bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF510ELM 10988356 ENCODE Processing Pipeline 049374439cd52189a82f040bd9ddbdaf https://www.encodeproject.org/files/ENCFF797YAV/@@download/ENCFF797YAV.bigBed GRCh38 released low read length ENCFF674DRC bigBed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419VDV 13599249 ENCODE Processing Pipeline 993d52ac06ccfbf480f587135e238a7b https://www.encodeproject.org/files/ENCFF674DRC/@@download/ENCFF674DRC.bigBed GRCh38 released low read length ENCFF295AZL bed narrowPeak conservative idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF391MSX, ENCFF419RSJ, ENCFF419VDV, ENCFF510ELM 243235 ENCODE Processing Pipeline 17b5b920cf539b256988cc9ea48a775d https://www.encodeproject.org/files/ENCFF295AZL/@@download/ENCFF295AZL.bed.gz GRCh38 released low read length ENCFF800DRH bigBed narrowPeak conservative idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF295AZL 511147 ENCODE Processing Pipeline c5e110f9c75ab1f4de6c552389f2db45 https://www.encodeproject.org/files/ENCFF800DRH/@@download/ENCFF800DRH.bigBed GRCh38 released low read length ENCFF950VAR bed narrowPeak optimal idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF391MSX, ENCFF419RSJ, ENCFF419VDV, ENCFF510ELM 281326 ENCODE Processing Pipeline 9dc30958f39acca162d27ba7efa40ddf https://www.encodeproject.org/files/ENCFF950VAR/@@download/ENCFF950VAR.bed.gz GRCh38 released low read length ENCFF045WLE bigBed narrowPeak optimal idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF950VAR 564862 ENCODE Processing Pipeline ab99941c4c61b001535eac1ccdb9cdea https://www.encodeproject.org/files/ENCFF045WLE/@@download/ENCFF045WLE.bigBed GRCh38 released low read length ENCFF667SBY bed narrowPeak optimal idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF350PSE, ENCFF351HRN, ENCFF483GPY 263815 ENCODE Processing Pipeline 79ac1ad8128698f02ddbb9d19d94e24a https://www.encodeproject.org/files/ENCFF667SBY/@@download/ENCFF667SBY.bed.gz hg19 archived low read length ENCFF492UQA bed narrowPeak conservative idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF350PSE, ENCFF351HRN, ENCFF483GPY 228137 ENCODE Processing Pipeline c7bf03a61d65eed48b1f98c60fae752f https://www.encodeproject.org/files/ENCFF492UQA/@@download/ENCFF492UQA.bed.gz hg19 archived low read length ENCFF837JGQ bigBed narrowPeak conservative idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF492UQA 491666 ENCODE Processing Pipeline 393d107dfab523b8a591c0b5f40716aa https://www.encodeproject.org/files/ENCFF837JGQ/@@download/ENCFF837JGQ.bigBed hg19 archived low read length ENCFF267CJD bigBed narrowPeak optimal idr thresholded peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF667SBY 540971 ENCODE Processing Pipeline 362222d3f907045b030cb6c8697ddffc https://www.encodeproject.org/files/ENCFF267CJD/@@download/ENCFF267CJD.bigBed hg19 archived low read length ENCFF610TGH fastq reads ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF976NWF 4216119209 Michael Snyder, Stanford f538395551c9a9b09279407180b17b0c SRA:SRR5111458 https://www.encodeproject.org/files/ENCFF610TGH/@@download/ENCFF610TGH.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF187NIJ fastq reads ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF252HPP 3281748579 Michael Snyder, Stanford 494d5ac79c228a366333a27a05c4445c SRA:SRR5111457 https://www.encodeproject.org/files/ENCFF187NIJ/@@download/ENCFF187NIJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF976NWF fastq reads ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF610TGH 4690507669 Michael Snyder, Stanford 676c09fe710adfec4b4dc26dd00fa073 SRA:SRR5111458 https://www.encodeproject.org/files/ENCFF976NWF/@@download/ENCFF976NWF.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF252HPP fastq reads ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF187NIJ 3613076040 Michael Snyder, Stanford ddb154c312aec26424fb9ac8e90340aa SRA:SRR5111457 https://www.encodeproject.org/files/ENCFF252HPP/@@download/ENCFF252HPP.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF897DYL bam unfiltered alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 100 ENCFF187NIJ, ENCFF252HPP, ENCFF643CGH 6380285558 ENCODE Processing Pipeline 8b7980f9362bf07d6bdccfbf6c3fdde6 https://www.encodeproject.org/files/ENCFF897DYL/@@download/ENCFF897DYL.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF497PYQ bam unfiltered alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 100 ENCFF187NIJ, ENCFF252HPP, ENCFF807MUK 6375382667 ENCODE Processing Pipeline 4180af527922068654e5529d0033c6b6 https://www.encodeproject.org/files/ENCFF497PYQ/@@download/ENCFF497PYQ.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF549UDR bam unfiltered alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 100 ENCFF610TGH, ENCFF807MUK, ENCFF976NWF 7784401655 ENCODE Processing Pipeline 55953f088f121d29207b763472678b41 https://www.encodeproject.org/files/ENCFF549UDR/@@download/ENCFF549UDR.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF637TXA bam unfiltered alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 100 ENCFF610TGH, ENCFF643CGH, ENCFF976NWF 7785555523 ENCODE Processing Pipeline 9964ef37074b6db6d99e5a9a4bc47cde https://www.encodeproject.org/files/ENCFF637TXA/@@download/ENCFF637TXA.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF373YTD bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 100 ENCFF187NIJ, ENCFF252HPP, ENCFF643CGH 4436394341 ENCODE Processing Pipeline 2323fa2dace3f4875870b7d36d543c46 https://www.encodeproject.org/files/ENCFF373YTD/@@download/ENCFF373YTD.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF974JDO bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 100 ENCFF187NIJ, ENCFF252HPP, ENCFF807MUK 4433087833 ENCODE Processing Pipeline 0cb53c143f05b3b0cd48e031ef5e511f https://www.encodeproject.org/files/ENCFF974JDO/@@download/ENCFF974JDO.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF720ZIN bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 100 ENCFF610TGH, ENCFF807MUK, ENCFF976NWF 3988760237 ENCODE Processing Pipeline a2891e9b5373f7dfe5e339726c486b36 https://www.encodeproject.org/files/ENCFF720ZIN/@@download/ENCFF720ZIN.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF304KSV bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 100 ENCFF610TGH, ENCFF643CGH, ENCFF976NWF 3991286277 ENCODE Processing Pipeline 89a063eea50bdf0037572290b0e1a611 https://www.encodeproject.org/files/ENCFF304KSV/@@download/ENCFF304KSV.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF193YMP bigWig signal p-value ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF160VXC, ENCFF720ZIN 972854083 ENCODE Processing Pipeline 091aac111e303a4482638c95f0950431 https://www.encodeproject.org/files/ENCFF193YMP/@@download/ENCFF193YMP.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF496FIE bigWig signal p-value ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF834TUP, ENCFF974JDO 1475611776 ENCODE Processing Pipeline e90ccc2f27d461de35626dd892719e70 https://www.encodeproject.org/files/ENCFF496FIE/@@download/ENCFF496FIE.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF288KRZ bigWig signal p-value ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF160VXC, ENCFF720ZIN, ENCFF834TUP, ENCFF974JDO 1913703473 ENCODE Processing Pipeline 59c204e551a710a9b97d8b799e7ff886 https://www.encodeproject.org/files/ENCFF288KRZ/@@download/ENCFF288KRZ.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF712QVE bigWig fold change over control ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF834TUP, ENCFF974JDO 1448139374 ENCODE Processing Pipeline 00b83447bc352dbabc55050c39567227 https://www.encodeproject.org/files/ENCFF712QVE/@@download/ENCFF712QVE.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF070JJJ bigWig fold change over control ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF160VXC, ENCFF720ZIN 1322830164 ENCODE Processing Pipeline 85679190930bb74db0021a7f5b85c6dd https://www.encodeproject.org/files/ENCFF070JJJ/@@download/ENCFF070JJJ.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF092NLA bigWig fold change over control ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF160VXC, ENCFF720ZIN, ENCFF834TUP, ENCFF974JDO 2371873154 ENCODE Processing Pipeline c410b819d84bc1045197ddaa01ea3cbe https://www.encodeproject.org/files/ENCFF092NLA/@@download/ENCFF092NLA.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF688JRI bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF834TUP, ENCFF974JDO 6894888 ENCODE Processing Pipeline 793d3c3aaad36a9eb226e1d4420a0d34 https://www.encodeproject.org/files/ENCFF688JRI/@@download/ENCFF688JRI.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF279UBV bigBed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF071TPY 10800788 ENCODE Processing Pipeline 41e96a86a5102ea204b912888b8ea71a https://www.encodeproject.org/files/ENCFF279UBV/@@download/ENCFF279UBV.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF071TPY bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF160VXC, ENCFF720ZIN 6730526 ENCODE Processing Pipeline ed84f45cddfdff51c39de9b315cdc819 https://www.encodeproject.org/files/ENCFF071TPY/@@download/ENCFF071TPY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF854NST bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF160VXC, ENCFF720ZIN, ENCFF834TUP, ENCFF974JDO 7193210 ENCODE Processing Pipeline f3fb390effebfb531d644a18850a92db https://www.encodeproject.org/files/ENCFF854NST/@@download/ENCFF854NST.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF737LSF bed narrowPeak conservative idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF071TPY, ENCFF688JRI, ENCFF854NST 14648 ENCODE Processing Pipeline 3f76160de1dba2a9f3ec67dfacbcd6fd https://www.encodeproject.org/files/ENCFF737LSF/@@download/ENCFF737LSF.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF140NSX bigBed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF688JRI 10852571 ENCODE Processing Pipeline e9802cf16eb8ce2878ceaa369d9aa8a6 https://www.encodeproject.org/files/ENCFF140NSX/@@download/ENCFF140NSX.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF528PSL bigBed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF854NST 12878496 ENCODE Processing Pipeline ceba9fe1035613c971bcd356d96b3c91 https://www.encodeproject.org/files/ENCFF528PSL/@@download/ENCFF528PSL.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF698MLW bed narrowPeak optimal idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF071TPY, ENCFF688JRI, ENCFF854NST 36732 ENCODE Processing Pipeline feaff44cd5137aa6ef07a5d4c399875b https://www.encodeproject.org/files/ENCFF698MLW/@@download/ENCFF698MLW.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF030GAR bigBed narrowPeak conservative idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF866NGZ 97518 ENCODE Processing Pipeline 497de0a054e470a52aa77982088418d9 https://www.encodeproject.org/files/ENCFF030GAR/@@download/ENCFF030GAR.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF603UZW bigBed narrowPeak optimal idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF086TCY 125918 ENCODE Processing Pipeline c62536e7f64be548248cee083d947124 https://www.encodeproject.org/files/ENCFF603UZW/@@download/ENCFF603UZW.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF353HNM bigWig signal p-value ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF304KSV, ENCFF790TAN 1075415569 ENCODE Processing Pipeline 9747e4078c99c25e4d09660a53e1b018 https://www.encodeproject.org/files/ENCFF353HNM/@@download/ENCFF353HNM.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF803HAP bigWig signal p-value ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF373YTD, ENCFF712WXB 1481033034 ENCODE Processing Pipeline 94053235d51290239ccbeb0fb845fb93 https://www.encodeproject.org/files/ENCFF803HAP/@@download/ENCFF803HAP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF872WUI bigWig signal p-value ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF304KSV, ENCFF373YTD, ENCFF712WXB, ENCFF790TAN 1885817533 ENCODE Processing Pipeline 5440af068e10fc805a79ae67947cf09d https://www.encodeproject.org/files/ENCFF872WUI/@@download/ENCFF872WUI.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF642RGY bigWig fold change over control ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF304KSV, ENCFF790TAN 1338163038 ENCODE Processing Pipeline daa0df05182f0d0f122d8022d9ffe519 https://www.encodeproject.org/files/ENCFF642RGY/@@download/ENCFF642RGY.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF554UVF bigWig fold change over control ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF373YTD, ENCFF712WXB 1455394740 ENCODE Processing Pipeline 05f7bc7029f8de96dd14c63225218fbf https://www.encodeproject.org/files/ENCFF554UVF/@@download/ENCFF554UVF.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF672WCV bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF304KSV, ENCFF373YTD, ENCFF712WXB, ENCFF790TAN 7187681 ENCODE Processing Pipeline 856e501a78742acacf39db62fc23c2b3 https://www.encodeproject.org/files/ENCFF672WCV/@@download/ENCFF672WCV.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF402HHJ bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF304KSV, ENCFF790TAN 6602763 ENCODE Processing Pipeline 4861b3eeda09c00652d15bfbc4418fc7 https://www.encodeproject.org/files/ENCFF402HHJ/@@download/ENCFF402HHJ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF343TGD bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF373YTD, ENCFF712WXB 6812592 ENCODE Processing Pipeline 7ba72f5ecc31190a4a34e20ed7a6cb6b https://www.encodeproject.org/files/ENCFF343TGD/@@download/ENCFF343TGD.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF081TVQ bigBed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF402HHJ 10804405 ENCODE Processing Pipeline 5c9648341fdbf92d442af3b4504d38e2 https://www.encodeproject.org/files/ENCFF081TVQ/@@download/ENCFF081TVQ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF702EPX bigBed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF343TGD 10863909 ENCODE Processing Pipeline afdd2a259c23c142db80b5307606b821 https://www.encodeproject.org/files/ENCFF702EPX/@@download/ENCFF702EPX.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF903WLD bigBed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF672WCV 12890421 ENCODE Processing Pipeline b29ad70d50cb29f1cf21a65d3fdbb4ba https://www.encodeproject.org/files/ENCFF903WLD/@@download/ENCFF903WLD.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF082RIZ bed narrowPeak optimal idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF343TGD, ENCFF402HHJ, ENCFF419RSJ, ENCFF672WCV 35445 ENCODE Processing Pipeline 43264cb78152663aa4e31c68033a0126 https://www.encodeproject.org/files/ENCFF082RIZ/@@download/ENCFF082RIZ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF438FCN bed narrowPeak conservative idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF343TGD, ENCFF402HHJ, ENCFF419RSJ, ENCFF672WCV 14449 ENCODE Processing Pipeline e3af8a54113109071b12162a28f7259d https://www.encodeproject.org/files/ENCFF438FCN/@@download/ENCFF438FCN.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF207HYL bigBed narrowPeak conservative idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF438FCN 98733 ENCODE Processing Pipeline 48eecb092604a251c83689125bd957ca https://www.encodeproject.org/files/ENCFF207HYL/@@download/ENCFF207HYL.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF155WYX bigBed narrowPeak optimal idr thresholded peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF082RIZ 125076 ENCODE Processing Pipeline 66dd65e2c3e0504cea753064f7ccfbc9 https://www.encodeproject.org/files/ENCFF155WYX/@@download/ENCFF155WYX.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF806RPA bigWig fold change over control ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF304KSV, ENCFF373YTD, ENCFF712WXB, ENCFF790TAN 2374538329 ENCODE Processing Pipeline 1a68344959bac4e613ff706faa736fc7 https://www.encodeproject.org/files/ENCFF806RPA/@@download/ENCFF806RPA.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF419FJV fastq reads ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 1 50 single-ended 1325383236 Richard Myers, HAIB 24f7d0dadb10275217e5ee1fbb02b224 https://www.encodeproject.org/files/ENCFF419FJV/@@download/ENCFF419FJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF712VDG bam unfiltered alignments ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 50 ENCFF419FJV, ENCFF643CGH 1475148417 ENCODE Processing Pipeline 45275ef63b9891ae543758594437b4ae https://www.encodeproject.org/files/ENCFF712VDG/@@download/ENCFF712VDG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF184STG bam unfiltered alignments ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 50 ENCFF419FJV, ENCFF807MUK 1473016262 ENCODE Processing Pipeline 154165729618b3467875113595149206 https://www.encodeproject.org/files/ENCFF184STG/@@download/ENCFF184STG.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF724BYL bam alignments ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 50 ENCFF419FJV, ENCFF643CGH 1071765121 ENCODE Processing Pipeline 5e3d85d64e13ef7580b9b6248650fd32 https://www.encodeproject.org/files/ENCFF724BYL/@@download/ENCFF724BYL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF041VKO bam alignments ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 50 ENCFF419FJV, ENCFF807MUK 1072168504 ENCODE Processing Pipeline 20f0883729b92c2f6525691743cd0fff https://www.encodeproject.org/files/ENCFF041VKO/@@download/ENCFF041VKO.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF867PFY bigWig signal p-value ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF041VKO, ENCFF061QOJ 694644687 ENCODE Processing Pipeline 19efd3fdf8f4558f91d946ad130c6e52 https://www.encodeproject.org/files/ENCFF867PFY/@@download/ENCFF867PFY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF114APV bigWig fold change over control ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF041VKO, ENCFF061QOJ 655140974 ENCODE Processing Pipeline 85fc6e2424a3566b38414fd88e5220c2 https://www.encodeproject.org/files/ENCFF114APV/@@download/ENCFF114APV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF865KAB bed narrowPeak peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF041VKO, ENCFF061QOJ 6894302 ENCODE Processing Pipeline d6cd2c4f3aa910ba10c39033be8de54f https://www.encodeproject.org/files/ENCFF865KAB/@@download/ENCFF865KAB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF267ADY bigBed narrowPeak peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF865KAB 12644415 ENCODE Processing Pipeline a86bb0bda4d47a4c7de13a8e703fbe73 https://www.encodeproject.org/files/ENCFF267ADY/@@download/ENCFF267ADY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF510PVQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF001TDO, ENCFF865KAB 47235 ENCODE Processing Pipeline 1d1ae48b97e594d8522f2918b7f79f9d https://www.encodeproject.org/files/ENCFF510PVQ/@@download/ENCFF510PVQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF332POP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF510PVQ 145483 ENCODE Processing Pipeline 193d28130c0670daee47d82ec7335b36 https://www.encodeproject.org/files/ENCFF332POP/@@download/ENCFF332POP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF949HTV bigWig signal p-value ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF332SVJ, ENCFF724BYL 808596723 ENCODE Processing Pipeline 92df1bc3b5f2a242afb244dcf5955e4a https://www.encodeproject.org/files/ENCFF949HTV/@@download/ENCFF949HTV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF570YIC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF419RSJ, ENCFF979VYV 45399 ENCODE Processing Pipeline a2cfd1378fd53456b8873f17a65840b2 https://www.encodeproject.org/files/ENCFF570YIC/@@download/ENCFF570YIC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF979VYV bed narrowPeak peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF332SVJ, ENCFF724BYL 6866441 ENCODE Processing Pipeline a1665f7483e00b160ecf2bcf9353cd7b https://www.encodeproject.org/files/ENCFF979VYV/@@download/ENCFF979VYV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF189UNT bigBed narrowPeak peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF979VYV 12659151 ENCODE Processing Pipeline 03fac176dd95f8c3a22a4bbc5194583e https://www.encodeproject.org/files/ENCFF189UNT/@@download/ENCFF189UNT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF207LBR bigWig fold change over control ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF332SVJ, ENCFF724BYL 666859999 ENCODE Processing Pipeline cae17c8874ed7a46241429c92a969a76 https://www.encodeproject.org/files/ENCFF207LBR/@@download/ENCFF207LBR.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF233AOY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF570YIC 143069 ENCODE Processing Pipeline cc1fc6bb7a136caf5c7df864c5e97067 https://www.encodeproject.org/files/ENCFF233AOY/@@download/ENCFF233AOY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF615CUN bam unfiltered alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF170QQM, ENCFF376TGF, ENCFF807MUK 5245997843 ENCODE Processing Pipeline d9d218e0c4cde2ecb79ae14f75a3a43c https://www.encodeproject.org/files/ENCFF615CUN/@@download/ENCFF615CUN.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF975NRV bam unfiltered alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF064YHZ, ENCFF794GSX, ENCFF807MUK 5174902548 ENCODE Processing Pipeline 45268fc9832e45d31fea8438b51457df https://www.encodeproject.org/files/ENCFF975NRV/@@download/ENCFF975NRV.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF170QQM fastq reads ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF376TGF 2349439771 Michael Snyder, Stanford 91cabb411aa74cef4bdb8407fd0b0141 https://www.encodeproject.org/files/ENCFF170QQM/@@download/ENCFF170QQM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released experiment not submitted to GEO partially characterized antibody ENCFF376TGF fastq reads ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF170QQM 2402734801 Michael Snyder, Stanford 866ecb77926d9b594b4b93b202f75879 https://www.encodeproject.org/files/ENCFF376TGF/@@download/ENCFF376TGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released experiment not submitted to GEO partially characterized antibody ENCFF064YHZ fastq reads ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF794GSX 2342255241 Michael Snyder, Stanford 4614d8898455dfe3b8386218821b9aba https://www.encodeproject.org/files/ENCFF064YHZ/@@download/ENCFF064YHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released experiment not submitted to GEO partially characterized antibody ENCFF794GSX fastq reads ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF064YHZ 2389819431 Michael Snyder, Stanford d571026cf7f1ab28045ff0761624e703 https://www.encodeproject.org/files/ENCFF794GSX/@@download/ENCFF794GSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released experiment not submitted to GEO partially characterized antibody ENCFF520SIO bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF064YHZ, ENCFF794GSX, ENCFF807MUK 4215145265 ENCODE Processing Pipeline 5af2bd48e5224e2b018fe2fc22354c00 https://www.encodeproject.org/files/ENCFF520SIO/@@download/ENCFF520SIO.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF805PAZ bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF170QQM, ENCFF376TGF, ENCFF807MUK 4349828657 ENCODE Processing Pipeline 8c320acf9700b79a4e17e0f1739f0ad0 https://www.encodeproject.org/files/ENCFF805PAZ/@@download/ENCFF805PAZ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF981SEK bigWig signal p-value ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF805PAZ 1091403767 ENCODE Processing Pipeline 9d67871424f59a4707bcf9952aaf16a1 https://www.encodeproject.org/files/ENCFF981SEK/@@download/ENCFF981SEK.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF555FPX bigWig signal p-value ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF520SIO 1139208993 ENCODE Processing Pipeline 6e71f5822408f0bdb94ede223e03bcd4 https://www.encodeproject.org/files/ENCFF555FPX/@@download/ENCFF555FPX.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF445GMB bigWig signal p-value ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF520SIO, ENCFF583FAG, ENCFF805PAZ 1954383935 ENCODE Processing Pipeline c7c8cc9d417fffb0d096bc5781fbae38 https://www.encodeproject.org/files/ENCFF445GMB/@@download/ENCFF445GMB.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF106KXB bigBed narrowPeak optimal idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF795QZU 157467 ENCODE Processing Pipeline 904dd698510d976be2c49cabe8bb589c https://www.encodeproject.org/files/ENCFF106KXB/@@download/ENCFF106KXB.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF859ZZT bigWig fold change over control ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF805PAZ 1092257753 ENCODE Processing Pipeline 5a9801635b4b0be651387898ac99b5ad https://www.encodeproject.org/files/ENCFF859ZZT/@@download/ENCFF859ZZT.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF329QXP bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF805PAZ 5909311 ENCODE Processing Pipeline 561ffac6c621f1477c7d50cd2543cd4c https://www.encodeproject.org/files/ENCFF329QXP/@@download/ENCFF329QXP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF160BTV bigWig fold change over control ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF520SIO 1091805960 ENCODE Processing Pipeline 5173fb498459f76b63d80a92234f3ec7 https://www.encodeproject.org/files/ENCFF160BTV/@@download/ENCFF160BTV.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF605EFM bigWig fold change over control ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF520SIO, ENCFF583FAG, ENCFF805PAZ 1995133038 ENCODE Processing Pipeline 391d533ed9ca69aef6f4aa880950a80e https://www.encodeproject.org/files/ENCFF605EFM/@@download/ENCFF605EFM.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF995GUT bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF520SIO 6004443 ENCODE Processing Pipeline 67e2a4a9a62cb8a9694eb955ce810215 https://www.encodeproject.org/files/ENCFF995GUT/@@download/ENCFF995GUT.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF636VMF bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF520SIO, ENCFF583FAG, ENCFF805PAZ 6997180 ENCODE Processing Pipeline 7b31289bd511e5016041c2dd926775ff https://www.encodeproject.org/files/ENCFF636VMF/@@download/ENCFF636VMF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF138LZH bigBed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF329QXP 11201270 ENCODE Processing Pipeline b10bb227cf814272386f0cc308e71bc0 https://www.encodeproject.org/files/ENCFF138LZH/@@download/ENCFF138LZH.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF460VVT bigBed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF636VMF 11188557 ENCODE Processing Pipeline 0cca1734d4f076f944a646f58ec4a927 https://www.encodeproject.org/files/ENCFF460VVT/@@download/ENCFF460VVT.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF290FDW bed narrowPeak conservative idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF329QXP, ENCFF636VMF, ENCFF995GUT 36940 ENCODE Processing Pipeline 50ebb802e6e20b289899e49990b9dfd9 https://www.encodeproject.org/files/ENCFF290FDW/@@download/ENCFF290FDW.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF419HIF bigBed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF995GUT 11229556 ENCODE Processing Pipeline f6268a226044dde0dc2f199a7c68e9ac https://www.encodeproject.org/files/ENCFF419HIF/@@download/ENCFF419HIF.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF299OMT bigBed narrowPeak conservative idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF290FDW 115684 ENCODE Processing Pipeline f9153273d1faec7c5242a4dab82e399e https://www.encodeproject.org/files/ENCFF299OMT/@@download/ENCFF299OMT.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF795QZU bed narrowPeak optimal idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF329QXP, ENCFF636VMF, ENCFF995GUT 66521 ENCODE Processing Pipeline 6f363b188c51b1846c21a87ed1df5d8f https://www.encodeproject.org/files/ENCFF795QZU/@@download/ENCFF795QZU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF362XWJ bam unfiltered alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF064YHZ, ENCFF643CGH, ENCFF794GSX 5182918128 ENCODE Processing Pipeline 716ac6a7a3574a08ffb51b7c601101c6 https://www.encodeproject.org/files/ENCFF362XWJ/@@download/ENCFF362XWJ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF670NKM bam unfiltered alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF170QQM, ENCFF376TGF, ENCFF643CGH 5256389480 ENCODE Processing Pipeline c513ead7d91fbeb4be6d87fecaa8d552 https://www.encodeproject.org/files/ENCFF670NKM/@@download/ENCFF670NKM.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF842HOT bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF064YHZ, ENCFF643CGH, ENCFF794GSX 4223423636 ENCODE Processing Pipeline 1f805176df9a23d62494ed01356cb57f https://www.encodeproject.org/files/ENCFF842HOT/@@download/ENCFF842HOT.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF807KMB bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF170QQM, ENCFF376TGF, ENCFF643CGH 4360511458 ENCODE Processing Pipeline 489b140a9f779c00e68f7ac11f6cdf89 https://www.encodeproject.org/files/ENCFF807KMB/@@download/ENCFF807KMB.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF860FRC bigWig signal p-value ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF807KMB 1017252300 ENCODE Processing Pipeline 6012da0a75fb9cc7867f13f75368455a https://www.encodeproject.org/files/ENCFF860FRC/@@download/ENCFF860FRC.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF458XOP bigWig signal p-value ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF842HOT 1157172114 ENCODE Processing Pipeline 3ca442fe858cd2f0ff04405502145574 https://www.encodeproject.org/files/ENCFF458XOP/@@download/ENCFF458XOP.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF128CJG bigWig signal p-value ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF807KMB, ENCFF842HOT 1745209950 ENCODE Processing Pipeline 80994645c18c8b035f9a62c59850fbf7 https://www.encodeproject.org/files/ENCFF128CJG/@@download/ENCFF128CJG.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF386HRF bigWig fold change over control ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF807KMB 1090563243 ENCODE Processing Pipeline accecf3360b5114c829e10e08cc8f254 https://www.encodeproject.org/files/ENCFF386HRF/@@download/ENCFF386HRF.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF697HWU bigWig fold change over control ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF842HOT 1115319266 ENCODE Processing Pipeline 039c2f8e513f54f3bd78e4b45d16b0ae https://www.encodeproject.org/files/ENCFF697HWU/@@download/ENCFF697HWU.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF837KRP bigWig fold change over control ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF807KMB, ENCFF842HOT 1997000259 ENCODE Processing Pipeline 9653a8fa43878bab29e49a6f7984d217 https://www.encodeproject.org/files/ENCFF837KRP/@@download/ENCFF837KRP.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF316SWE bigBed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF169SUT 11196215 ENCODE Processing Pipeline 76dd4ed88cca1eb5160a2e31bef05ffd https://www.encodeproject.org/files/ENCFF316SWE/@@download/ENCFF316SWE.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF968AWR bigBed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF584NTF 11224762 ENCODE Processing Pipeline 67b67e353e93d221e87350ffd7cbd202 https://www.encodeproject.org/files/ENCFF968AWR/@@download/ENCFF968AWR.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF584NTF bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF842HOT 5792423 ENCODE Processing Pipeline a9c65e27f603d6e01431d99b03541930 https://www.encodeproject.org/files/ENCFF584NTF/@@download/ENCFF584NTF.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF169SUT bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF807KMB 5742228 ENCODE Processing Pipeline 7169ad066287a5ba2210d62765e8519f https://www.encodeproject.org/files/ENCFF169SUT/@@download/ENCFF169SUT.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF220QWK bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF807KMB, ENCFF842HOT 6926732 ENCODE Processing Pipeline d645f675c2287278bc5c41a82ca97eaf https://www.encodeproject.org/files/ENCFF220QWK/@@download/ENCFF220QWK.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF520HKB bigBed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF220QWK 11208741 ENCODE Processing Pipeline 8eb4a8c96e0370c7a019b50d3f17597e https://www.encodeproject.org/files/ENCFF520HKB/@@download/ENCFF520HKB.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF385IIC bed narrowPeak conservative idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF169SUT, ENCFF220QWK, ENCFF419RSJ, ENCFF584NTF 40185 ENCODE Processing Pipeline b895add7d657db80b97b73c85f707f22 https://www.encodeproject.org/files/ENCFF385IIC/@@download/ENCFF385IIC.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF347USC bed narrowPeak optimal idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF169SUT, ENCFF220QWK, ENCFF419RSJ, ENCFF584NTF 72663 ENCODE Processing Pipeline 467f71a6e92657cb1fcc7f6f0879ce94 https://www.encodeproject.org/files/ENCFF347USC/@@download/ENCFF347USC.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF182QGU bigBed narrowPeak conservative idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF385IIC 123238 ENCODE Processing Pipeline fcbdfe66a38f715dbd5307bef631a2f4 https://www.encodeproject.org/files/ENCFF182QGU/@@download/ENCFF182QGU.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF871DQS bigBed narrowPeak optimal idr thresholded peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF347USC 201412 ENCODE Processing Pipeline 191fc5e572fdd36b83c1db50ce470a07 https://www.encodeproject.org/files/ENCFF871DQS/@@download/ENCFF871DQS.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF146LUA fastq reads ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 1 76 single-ended 787319886 Bradley Bernstein, Broad e3b96eeba393f56be147c1e1e5f7339d SRA:SRR5833131 https://www.encodeproject.org/files/ENCFF146LUA/@@download/ENCFF146LUA.fastq.gz Illumina HiSeq 2500 /files/ENCFF170LRD/, /files/ENCFF410DXF/, /files/ENCFF485UYV/, /files/ENCFF784DBC/ released antibody characterized with exemption NTR biosample ENCFF414LTY fastq reads ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 1 76 single-ended 780879328 Bradley Bernstein, Broad 6534fb6fb9b9a8e74e3d4747712780c8 SRA:SRR5833132 https://www.encodeproject.org/files/ENCFF414LTY/@@download/ENCFF414LTY.fastq.gz Illumina HiSeq 2500 /files/ENCFF170LRD/, /files/ENCFF410DXF/, /files/ENCFF485UYV/, /files/ENCFF784DBC/ released antibody characterized with exemption NTR biosample ENCFF953USV fastq reads ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 1 76 single-ended 394560995 Bradley Bernstein, Broad 30a2c08a75ec13e063e1f43b57b2f475 SRA:SRR5833127 https://www.encodeproject.org/files/ENCFF953USV/@@download/ENCFF953USV.fastq.gz Illumina HiSeq 2500 /files/ENCFF036GMX/, /files/ENCFF184GOD/, /files/ENCFF587HMQ/, /files/ENCFF787SDP/ released antibody characterized with exemption NTR biosample ENCFF438UGJ fastq reads ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 1 76 single-ended 382263992 Bradley Bernstein, Broad 97415c27d21f064c1a3715a6b677f078 SRA:SRR5833128 https://www.encodeproject.org/files/ENCFF438UGJ/@@download/ENCFF438UGJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF036GMX/, /files/ENCFF184GOD/, /files/ENCFF587HMQ/, /files/ENCFF787SDP/ released antibody characterized with exemption NTR biosample ENCFF071BCK fastq reads ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 1 76 single-ended 468456138 Bradley Bernstein, Broad 1998d7d947ff9c9c3b7b069820b0e193 SRA:SRR5833129 https://www.encodeproject.org/files/ENCFF071BCK/@@download/ENCFF071BCK.fastq.gz Illumina HiSeq 2500 /files/ENCFF036GMX/, /files/ENCFF184GOD/, /files/ENCFF587HMQ/, /files/ENCFF787SDP/ released antibody characterized with exemption NTR biosample ENCFF842MOT fastq reads ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 1 76 single-ended 455211421 Bradley Bernstein, Broad c7c36b09c5510d448c65621ae1ea94dd SRA:SRR5833130 https://www.encodeproject.org/files/ENCFF842MOT/@@download/ENCFF842MOT.fastq.gz Illumina HiSeq 2500 /files/ENCFF036GMX/, /files/ENCFF184GOD/, /files/ENCFF587HMQ/, /files/ENCFF787SDP/ released antibody characterized with exemption NTR biosample ENCFF977JRH bam unfiltered alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 76 ENCFF071BCK, ENCFF438UGJ, ENCFF807MUK, ENCFF842MOT, ENCFF953USV 1638853359 ENCODE Processing Pipeline 4f29a98a4fd621d6e42a08bf33fc7b47 https://www.encodeproject.org/files/ENCFF977JRH/@@download/ENCFF977JRH.bam hg19 released antibody characterized with exemption NTR biosample ENCFF224MKT bam unfiltered alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 76 ENCFF146LUA, ENCFF414LTY, ENCFF807MUK 1501623152 ENCODE Processing Pipeline 25505c0b1e86dbbe357a443a02065243 https://www.encodeproject.org/files/ENCFF224MKT/@@download/ENCFF224MKT.bam hg19 released antibody characterized with exemption NTR biosample ENCFF687EVJ bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 76 ENCFF071BCK, ENCFF438UGJ, ENCFF807MUK, ENCFF842MOT, ENCFF953USV 1328490058 ENCODE Processing Pipeline 49076d079eba01246c68e848b100d813 https://www.encodeproject.org/files/ENCFF687EVJ/@@download/ENCFF687EVJ.bam hg19 released antibody characterized with exemption NTR biosample ENCFF365YNJ bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 76 ENCFF146LUA, ENCFF414LTY, ENCFF807MUK 1194374916 ENCODE Processing Pipeline 6ef526439edaa88d2d28ef9375f6ddb3 https://www.encodeproject.org/files/ENCFF365YNJ/@@download/ENCFF365YNJ.bam hg19 released antibody characterized with exemption NTR biosample ENCFF287YVX bam unfiltered alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 76 ENCFF146LUA, ENCFF414LTY, ENCFF643CGH 1505118418 ENCODE Processing Pipeline 39a85b52bc61258ff2df145e265941a5 https://www.encodeproject.org/files/ENCFF287YVX/@@download/ENCFF287YVX.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF839WER bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 76 ENCFF071BCK, ENCFF438UGJ, ENCFF643CGH, ENCFF842MOT, ENCFF953USV 1329978254 ENCODE Processing Pipeline c40c8e722d05c986ecf6ced97f582073 https://www.encodeproject.org/files/ENCFF839WER/@@download/ENCFF839WER.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF522LXS bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 76 ENCFF146LUA, ENCFF414LTY, ENCFF643CGH 1195441396 ENCODE Processing Pipeline 6e16a87e29b4528c0f08f0be05a14b6a https://www.encodeproject.org/files/ENCFF522LXS/@@download/ENCFF522LXS.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF182NVZ bam unfiltered alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 76 ENCFF071BCK, ENCFF438UGJ, ENCFF643CGH, ENCFF842MOT, ENCFF953USV 1644370614 ENCODE Processing Pipeline 5d06bb8c0594fcf15151d7262e30cd85 https://www.encodeproject.org/files/ENCFF182NVZ/@@download/ENCFF182NVZ.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF595DCR bigWig signal p-value ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ 1432307046 ENCODE Processing Pipeline fc9b8810206d0c1df608f1e05ea5764b https://www.encodeproject.org/files/ENCFF595DCR/@@download/ENCFF595DCR.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF203XBH bigWig signal p-value ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 1367154660 ENCODE Processing Pipeline 2d6b4d7843c3e43873cbb814efbbe1f7 https://www.encodeproject.org/files/ENCFF203XBH/@@download/ENCFF203XBH.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF746JCQ bigWig signal p-value ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF087GJL, ENCFF092HKY, ENCFF687EVJ 1366160199 ENCODE Processing Pipeline 5ce2c4caf912c52cf0310282233d1fca https://www.encodeproject.org/files/ENCFF746JCQ/@@download/ENCFF746JCQ.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF220NYC bigWig signal p-value ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ, ENCFF687EVJ 1411159581 ENCODE Processing Pipeline ef51608241ea2ffae3578346157202a0 https://www.encodeproject.org/files/ENCFF220NYC/@@download/ENCFF220NYC.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF163ABS bigWig fold change over control ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF087GJL, ENCFF092HKY, ENCFF687EVJ 1185378071 ENCODE Processing Pipeline 2f21ed8c283bce81b656b45131064c41 https://www.encodeproject.org/files/ENCFF163ABS/@@download/ENCFF163ABS.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF184TGJ bigBed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF536TDH 13582101 ENCODE Processing Pipeline c55e1e529050007bb975db9bdfc839fa https://www.encodeproject.org/files/ENCFF184TGJ/@@download/ENCFF184TGJ.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF822HVX bigWig fold change over control ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF522LXS, ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 1628209792 ENCODE Processing Pipeline ab150d146f435ab02a877e7962e51a3b https://www.encodeproject.org/files/ENCFF822HVX/@@download/ENCFF822HVX.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF061DVI bigWig fold change over control ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ, ENCFF687EVJ 1631047434 ENCODE Processing Pipeline 373310f0f2e2110e5aa0955e057faf54 https://www.encodeproject.org/files/ENCFF061DVI/@@download/ENCFF061DVI.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF005DKU bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 6006003 ENCODE Processing Pipeline e5b321286ebb2eada7757e176a9b3aaa https://www.encodeproject.org/files/ENCFF005DKU/@@download/ENCFF005DKU.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF928QRF bigBed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF423JIG 13788559 ENCODE Processing Pipeline ae0d34d2a385ff81cafb55cd97b462ee https://www.encodeproject.org/files/ENCFF928QRF/@@download/ENCFF928QRF.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF851YEY bigWig signal p-value ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF522LXS, ENCFF557VQL, ENCFF944NDZ 1279249398 ENCODE Processing Pipeline 715bc4afea81d0c7cadef2fa380570e6 https://www.encodeproject.org/files/ENCFF851YEY/@@download/ENCFF851YEY.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF169NVW bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF522LXS, ENCFF557VQL, ENCFF944NDZ 5886358 ENCODE Processing Pipeline 478fbc0e5b109a00b762d3de3e615126 https://www.encodeproject.org/files/ENCFF169NVW/@@download/ENCFF169NVW.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF736LBL bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF087GJL, ENCFF092HKY, ENCFF687EVJ 6013482 ENCODE Processing Pipeline e90c186ea3598929d636d4b1f7b5c3eb https://www.encodeproject.org/files/ENCFF736LBL/@@download/ENCFF736LBL.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF910CTG bigBed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF169NVW 13616107 ENCODE Processing Pipeline 79fdea6545510ac39190aecc99fd7cc0 https://www.encodeproject.org/files/ENCFF910CTG/@@download/ENCFF910CTG.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF365HUG bigBed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF736LBL 13659549 ENCODE Processing Pipeline 4c4f0729ab404c19cbab961d92b03505 https://www.encodeproject.org/files/ENCFF365HUG/@@download/ENCFF365HUG.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF836WAF bigBed narrowPeak conservative idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF514ZSQ 958463 ENCODE Processing Pipeline caac25523c17e067676814e1444bcaf6 https://www.encodeproject.org/files/ENCFF836WAF/@@download/ENCFF836WAF.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF374BNP bed narrowPeak optimal idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF070WIW, ENCFF536TDH, ENCFF736LBL 454345 ENCODE Processing Pipeline 683ef5fc6a8f9999e64a515baa290711 https://www.encodeproject.org/files/ENCFF374BNP/@@download/ENCFF374BNP.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF812MNY bigWig signal p-value ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF522LXS, ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 1602655627 ENCODE Processing Pipeline cca500fea33245bc7503ba37ed51279a https://www.encodeproject.org/files/ENCFF812MNY/@@download/ENCFF812MNY.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF801FBV bigWig fold change over control ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF522LXS, ENCFF557VQL, ENCFF944NDZ 1069291329 ENCODE Processing Pipeline c869c12b8082730e07d775b16d64729d https://www.encodeproject.org/files/ENCFF801FBV/@@download/ENCFF801FBV.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF055UBO bigWig fold change over control ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ 1117450247 ENCODE Processing Pipeline e814a8001907c569752cd4a10f2c9703 https://www.encodeproject.org/files/ENCFF055UBO/@@download/ENCFF055UBO.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF980RDN bigWig fold change over control ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 1180245015 ENCODE Processing Pipeline ab017eab23cc81dca7d00d05e3e522e3 https://www.encodeproject.org/files/ENCFF980RDN/@@download/ENCFF980RDN.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF536TDH bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ 5644080 ENCODE Processing Pipeline 05b105e77069b9e7001308767202f8e7 https://www.encodeproject.org/files/ENCFF536TDH/@@download/ENCFF536TDH.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF423JIG bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF522LXS, ENCFF557VQL, ENCFF839WER, ENCFF944NDZ 6511583 ENCODE Processing Pipeline 64a916be06afc35559e0d8c9dd942521 https://www.encodeproject.org/files/ENCFF423JIG/@@download/ENCFF423JIG.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF122IMV bed narrowPeak optimal idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF005DKU, ENCFF169NVW, ENCFF419RSJ, ENCFF423JIG 454350 ENCODE Processing Pipeline ba031dc1cea6e9bd06a9a64ce69994e4 https://www.encodeproject.org/files/ENCFF122IMV/@@download/ENCFF122IMV.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF499EPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF374BNP 988065 ENCODE Processing Pipeline 5a9526151f68015143c97c37e23c226f https://www.encodeproject.org/files/ENCFF499EPQ/@@download/ENCFF499EPQ.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF070WIW bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ, ENCFF687EVJ 6467565 ENCODE Processing Pipeline 19d4edecd4ac9965263b0c4a24d819c2 https://www.encodeproject.org/files/ENCFF070WIW/@@download/ENCFF070WIW.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF514ZSQ bed narrowPeak conservative idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF070WIW, ENCFF536TDH, ENCFF736LBL 436266 ENCODE Processing Pipeline d3f85c8ff6c84998b6ba946daec0f6fc https://www.encodeproject.org/files/ENCFF514ZSQ/@@download/ENCFF514ZSQ.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF919BAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF983ZND 976775 ENCODE Processing Pipeline 05046ce219166902425671726a850b4f https://www.encodeproject.org/files/ENCFF919BAQ/@@download/ENCFF919BAQ.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF516IMF bigBed narrowPeak optimal idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF122IMV 993109 ENCODE Processing Pipeline deebda94a9f145cecadf7cca94fd0517 https://www.encodeproject.org/files/ENCFF516IMF/@@download/ENCFF516IMF.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF980OXT bigBed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF005DKU 13683939 ENCODE Processing Pipeline 2ff471772d8755bbda035e0327a5f39a https://www.encodeproject.org/files/ENCFF980OXT/@@download/ENCFF980OXT.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF535LZY bigBed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF070WIW 13723618 ENCODE Processing Pipeline d155a65b2d8a6bdb88175e5c97749502 https://www.encodeproject.org/files/ENCFF535LZY/@@download/ENCFF535LZY.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF983ZND bed narrowPeak conservative idr thresholded peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1, 2 ENCFF005DKU, ENCFF169NVW, ENCFF419RSJ, ENCFF423JIG 445762 ENCODE Processing Pipeline a8236342339f54bbd7ff23389412d55a https://www.encodeproject.org/files/ENCFF983ZND/@@download/ENCFF983ZND.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF883QAC bam unfiltered alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF394OKZ, ENCFF579DKO, ENCFF807MUK 4152570025 ENCODE Processing Pipeline 579c9ecfd9e34d88a86814583a5c8f7b https://www.encodeproject.org/files/ENCFF883QAC/@@download/ENCFF883QAC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF188CZN bam unfiltered alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF691DSF, ENCFF807MUK, ENCFF810SJL 4029213424 ENCODE Processing Pipeline cbed1df7c035b99ec4d7806c09d6e95c https://www.encodeproject.org/files/ENCFF188CZN/@@download/ENCFF188CZN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF394OKZ fastq reads ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF579DKO 1966090308 Michael Snyder, Stanford 9f9fd0e849f4b54144d163ad2f34d3a6 SRA:SRR5112339 https://www.encodeproject.org/files/ENCFF394OKZ/@@download/ENCFF394OKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF810SJL fastq reads ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF691DSF 1954869550 Michael Snyder, Stanford 7e0610f1e0931e02fe08488939687a39 SRA:SRR5112338 https://www.encodeproject.org/files/ENCFF810SJL/@@download/ENCFF810SJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF579DKO fastq reads ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF394OKZ 2001522286 Michael Snyder, Stanford dc08f6cd711b1174bf843d4735e761ed SRA:SRR5112339 https://www.encodeproject.org/files/ENCFF579DKO/@@download/ENCFF579DKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF691DSF fastq reads ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF810SJL 1896421683 Michael Snyder, Stanford 9ae3a64ce69415b1b3171f52df17a6d1 SRA:SRR5112338 https://www.encodeproject.org/files/ENCFF691DSF/@@download/ENCFF691DSF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF056YEU bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF394OKZ, ENCFF579DKO, ENCFF807MUK 3069930850 ENCODE Processing Pipeline 658fbc654bf48964a185aee78ac59d83 https://www.encodeproject.org/files/ENCFF056YEU/@@download/ENCFF056YEU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF688SSK bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF691DSF, ENCFF807MUK, ENCFF810SJL 3064998527 ENCODE Processing Pipeline 8059b4367fdf2bf3e8603b71bf939228 https://www.encodeproject.org/files/ENCFF688SSK/@@download/ENCFF688SSK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF507FJP bigWig signal p-value ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF056YEU, ENCFF581ZJL 931075036 ENCODE Processing Pipeline f922c10a77abad8118ffcd1f4d74b35a https://www.encodeproject.org/files/ENCFF507FJP/@@download/ENCFF507FJP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF228AQW bigWig signal p-value ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF688SSK 1037211327 ENCODE Processing Pipeline fca4597e782637222d5e7f8ca3aba7d9 https://www.encodeproject.org/files/ENCFF228AQW/@@download/ENCFF228AQW.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF321HLT bigWig signal p-value ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF056YEU, ENCFF581ZJL, ENCFF688SSK 1850720333 ENCODE Processing Pipeline 6d9e191ebb46e22d9dceb64a0a642809 https://www.encodeproject.org/files/ENCFF321HLT/@@download/ENCFF321HLT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF727EDE bigWig fold change over control ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF056YEU, ENCFF581ZJL 1002537955 ENCODE Processing Pipeline a931e1f123ab29c6e27d10307204b7ca https://www.encodeproject.org/files/ENCFF727EDE/@@download/ENCFF727EDE.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF191MMQ bigWig fold change over control ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF688SSK 976091880 ENCODE Processing Pipeline 8f524f1a881196e307ed706994e7379e https://www.encodeproject.org/files/ENCFF191MMQ/@@download/ENCFF191MMQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF928QBF bigWig fold change over control ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF056YEU, ENCFF581ZJL, ENCFF688SSK 1867542027 ENCODE Processing Pipeline 2d85765e6d02d0c1797286e024a68dea https://www.encodeproject.org/files/ENCFF928QBF/@@download/ENCFF928QBF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF224GWU bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF056YEU, ENCFF581ZJL 6885777 ENCODE Processing Pipeline 70192d3307157e7e26c82dba98d77c9d https://www.encodeproject.org/files/ENCFF224GWU/@@download/ENCFF224GWU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF035WWJ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF688SSK 6996638 ENCODE Processing Pipeline 1e16fc976551c3b160a13c72af02467e https://www.encodeproject.org/files/ENCFF035WWJ/@@download/ENCFF035WWJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF359OAZ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF056YEU, ENCFF581ZJL, ENCFF688SSK 7160460 ENCODE Processing Pipeline 505401679b58f689a58f4932a8bc76d7 https://www.encodeproject.org/files/ENCFF359OAZ/@@download/ENCFF359OAZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF019LTW bigBed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF224GWU 13120127 ENCODE Processing Pipeline 666a4d0a38981d6a8b0c821632fbd6ba https://www.encodeproject.org/files/ENCFF019LTW/@@download/ENCFF019LTW.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF643YKS bigBed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF035WWJ 13043160 ENCODE Processing Pipeline 5bfbad0fb06b969770acc1f1062d1c11 https://www.encodeproject.org/files/ENCFF643YKS/@@download/ENCFF643YKS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF232TTD bigBed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF359OAZ 12902896 ENCODE Processing Pipeline 52a12b1ea0e762d3c2d3ba1c77af2b2d https://www.encodeproject.org/files/ENCFF232TTD/@@download/ENCFF232TTD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF010LCS bam unfiltered alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF691DSF, ENCFF810SJL 4031072255 ENCODE Processing Pipeline 7f62a231069738af16f076b2a87b7fa7 https://www.encodeproject.org/files/ENCFF010LCS/@@download/ENCFF010LCS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF565IHI bam unfiltered alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF394OKZ, ENCFF579DKO, ENCFF643CGH 4154709921 ENCODE Processing Pipeline 40364af286f6de0ad20e3f0241c72ce4 https://www.encodeproject.org/files/ENCFF565IHI/@@download/ENCFF565IHI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF550IUC bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF691DSF, ENCFF810SJL 3065987892 ENCODE Processing Pipeline 4a2fdf561a9bc85ef728f2dc420b0e9d https://www.encodeproject.org/files/ENCFF550IUC/@@download/ENCFF550IUC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF284XYU bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF394OKZ, ENCFF579DKO, ENCFF643CGH 3070668564 ENCODE Processing Pipeline 6a585d29acf92f480d014e239ff1cc26 https://www.encodeproject.org/files/ENCFF284XYU/@@download/ENCFF284XYU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF560KJD bigWig signal p-value ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF284XYU, ENCFF910IKB 1096280528 ENCODE Processing Pipeline 15bb5d4a0a3c21bde45fd448f607ac17 https://www.encodeproject.org/files/ENCFF560KJD/@@download/ENCFF560KJD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF770VPZ bigWig signal p-value ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF550IUC 1067413542 ENCODE Processing Pipeline 4718cd455634c11ba7c9531eac52f7af https://www.encodeproject.org/files/ENCFF770VPZ/@@download/ENCFF770VPZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF651CVV bigWig signal p-value ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF284XYU, ENCFF550IUC, ENCFF910IKB 1680009065 ENCODE Processing Pipeline 24aebe4a09f326e94c3bcc34737933a7 https://www.encodeproject.org/files/ENCFF651CVV/@@download/ENCFF651CVV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF574EBO bigWig fold change over control ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF284XYU, ENCFF910IKB 997976918 ENCODE Processing Pipeline e5d88c8623d11a1e6d6844077ff93ff4 https://www.encodeproject.org/files/ENCFF574EBO/@@download/ENCFF574EBO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF450MKP bigWig fold change over control ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF550IUC 961107474 ENCODE Processing Pipeline b373b2f99cff6dc0bd1e7b5969808ebe https://www.encodeproject.org/files/ENCFF450MKP/@@download/ENCFF450MKP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF814GLP bigWig fold change over control ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF284XYU, ENCFF550IUC, ENCFF910IKB 1870275533 ENCODE Processing Pipeline 620edde6e331bd512615d5eba823ba93 https://www.encodeproject.org/files/ENCFF814GLP/@@download/ENCFF814GLP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF615BZR bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF284XYU, ENCFF910IKB 6784009 ENCODE Processing Pipeline 86a7cd8db98332b152e44a13e13c4e71 https://www.encodeproject.org/files/ENCFF615BZR/@@download/ENCFF615BZR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF754BES bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF550IUC 6949241 ENCODE Processing Pipeline b1b415c9b9f964d4b2cf246830bd50c9 https://www.encodeproject.org/files/ENCFF754BES/@@download/ENCFF754BES.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF888YHJ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF284XYU, ENCFF550IUC, ENCFF910IKB 7123575 ENCODE Processing Pipeline 9a0df81b4f7740c73a603f2ade5e029e https://www.encodeproject.org/files/ENCFF888YHJ/@@download/ENCFF888YHJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF048KVM bigBed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF615BZR 13103618 ENCODE Processing Pipeline 4dce0b1269088646f0e4443ea04cd840 https://www.encodeproject.org/files/ENCFF048KVM/@@download/ENCFF048KVM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF524TVP bigBed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF754BES 13055512 ENCODE Processing Pipeline 05fd9e83dcf5d620033d97e6a8e8e32d https://www.encodeproject.org/files/ENCFF524TVP/@@download/ENCFF524TVP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF497MMS bigBed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF888YHJ 12880245 ENCODE Processing Pipeline 5ff76aa469eba45fbf864374030f28de https://www.encodeproject.org/files/ENCFF497MMS/@@download/ENCFF497MMS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF067JKB bed narrowPeak conservative idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF615BZR, ENCFF754BES, ENCFF888YHJ 590349 ENCODE Processing Pipeline 7df767d8ffe21784582fddfb3063c3e5 https://www.encodeproject.org/files/ENCFF067JKB/@@download/ENCFF067JKB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF947LCV bigBed narrowPeak conservative idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF067JKB 1148196 ENCODE Processing Pipeline 1cd402dfc723c5f2d4b073c7403f47cc https://www.encodeproject.org/files/ENCFF947LCV/@@download/ENCFF947LCV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF363IQN bed narrowPeak optimal idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF615BZR, ENCFF754BES, ENCFF888YHJ 681758 ENCODE Processing Pipeline 604cdb65e93975323200d473f7490995 https://www.encodeproject.org/files/ENCFF363IQN/@@download/ENCFF363IQN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF043FLB bigBed narrowPeak optimal idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF363IQN 1284565 ENCODE Processing Pipeline 04404890e874fb50559141f85392d8a3 https://www.encodeproject.org/files/ENCFF043FLB/@@download/ENCFF043FLB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF296LKS bigBed narrowPeak optimal idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF175IIE 1176199 ENCODE Processing Pipeline 4ee399ef901821c71a65092fbd917a76 https://www.encodeproject.org/files/ENCFF296LKS/@@download/ENCFF296LKS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF175IIE bed narrowPeak optimal idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF035WWJ, ENCFF224GWU, ENCFF359OAZ 603194 ENCODE Processing Pipeline adbe9db9e3821e3e5d266adc496d2cf0 https://www.encodeproject.org/files/ENCFF175IIE/@@download/ENCFF175IIE.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF078SJN bed narrowPeak conservative idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF035WWJ, ENCFF224GWU, ENCFF359OAZ 515602 ENCODE Processing Pipeline 76344cdee4dc5d4227dad8bf9b6c9287 https://www.encodeproject.org/files/ENCFF078SJN/@@download/ENCFF078SJN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF418RBD bigBed narrowPeak conservative idr thresholded peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF078SJN 1051662 ENCODE Processing Pipeline 9058f5c8423aa38e6ce2d341b32e71f2 https://www.encodeproject.org/files/ENCFF418RBD/@@download/ENCFF418RBD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF441EMM fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 1 100 paired-ended 1 ENCFF239WHZ 11315624661 Michael Snyder, Stanford 8065bc43668dd15742b2f00e745fe190 https://www.encodeproject.org/files/ENCFF441EMM/@@download/ENCFF441EMM.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF239WHZ fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 1 100 paired-ended 2 ENCFF441EMM 11719318502 Michael Snyder, Stanford c7477950e610260f08dbb36316a5d590 https://www.encodeproject.org/files/ENCFF239WHZ/@@download/ENCFF239WHZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF277DLT fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 1 100 paired-ended 1 ENCFF245NVS 3202330665 Michael Snyder, Stanford 81f2701fc881ac7a4a9d96bbb22a4dde https://www.encodeproject.org/files/ENCFF277DLT/@@download/ENCFF277DLT.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF245NVS fastq reads ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 1 100 paired-ended 2 ENCFF277DLT 3600069170 Michael Snyder, Stanford d86c414ee1d27bc0f5e92a668a112fd6 https://www.encodeproject.org/files/ENCFF245NVS/@@download/ENCFF245NVS.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF128KAH bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF643CGH 6217909376 ENCODE Processing Pipeline f3d3113e21bd11fbf8b2c1bceb52e1c3 https://www.encodeproject.org/files/ENCFF128KAH/@@download/ENCFF128KAH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF697SUP bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF807MUK 6217219741 ENCODE Processing Pipeline d20d368b6b3616157135d3fb25b40fd8 https://www.encodeproject.org/files/ENCFF697SUP/@@download/ENCFF697SUP.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF542XCL bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF643CGH 3564823673 ENCODE Processing Pipeline cece36e3fecae4aa34e02bb8893ebaf4 https://www.encodeproject.org/files/ENCFF542XCL/@@download/ENCFF542XCL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF005DDP bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF807MUK 3558174404 ENCODE Processing Pipeline 9edf4f5bf4d931d0bcf43ed088cf820e https://www.encodeproject.org/files/ENCFF005DDP/@@download/ENCFF005DDP.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF256ACA bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF643CGH 19311477430 ENCODE Processing Pipeline 76f610d370464d0f5b6badf6409d5ecf https://www.encodeproject.org/files/ENCFF256ACA/@@download/ENCFF256ACA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF004TTQ bam unfiltered alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF807MUK 19331361872 ENCODE Processing Pipeline 30134e38729c244800e8c17a04eeca3e https://www.encodeproject.org/files/ENCFF004TTQ/@@download/ENCFF004TTQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF549AQZ bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF643CGH 6689524769 ENCODE Processing Pipeline 1edce715a895ae4bf47aa5163c9a57b0 https://www.encodeproject.org/files/ENCFF549AQZ/@@download/ENCFF549AQZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF585JBT bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF807MUK 6672108719 ENCODE Processing Pipeline 365c67c7d579471808a2827966314632 https://www.encodeproject.org/files/ENCFF585JBT/@@download/ENCFF585JBT.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF710GGG bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF322NTO, ENCFF542XCL, ENCFF549AQZ, ENCFF666ATR 2370725891 ENCODE Processing Pipeline 77bb5e006bdd879497263185e8cbc7cf https://www.encodeproject.org/files/ENCFF710GGG/@@download/ENCFF710GGG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF061QWC bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF097DQG 13374366 ENCODE Processing Pipeline 4daab3071bd2baceb90d7601a575c851 https://www.encodeproject.org/files/ENCFF061QWC/@@download/ENCFF061QWC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF136JRT bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF364EJS 13124860 ENCODE Processing Pipeline 41c9d21632d05ab188bcbe0ff9e3d402 https://www.encodeproject.org/files/ENCFF136JRT/@@download/ENCFF136JRT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF341NXW bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF322NTO, ENCFF542XCL 1230473048 ENCODE Processing Pipeline fda1e4b3e30fd1d073f3658267eec304 https://www.encodeproject.org/files/ENCFF341NXW/@@download/ENCFF341NXW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF097DQG bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF322NTO, ENCFF549AQZ, ENCFF666ATR 7218875 ENCODE Processing Pipeline b4c7253ba55d5dbd073774ca383c990d https://www.encodeproject.org/files/ENCFF097DQG/@@download/ENCFF097DQG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF610SRE bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF307ZMU 13311065 ENCODE Processing Pipeline af88d82d3f091daa48dd67c4a2288826 https://www.encodeproject.org/files/ENCFF610SRE/@@download/ENCFF610SRE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF644PZA bigBed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF230RZX 1597727 ENCODE Processing Pipeline 9549e29c62f9b7fb68cf90d91f1f7c39 https://www.encodeproject.org/files/ENCFF644PZA/@@download/ENCFF644PZA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF248AYM bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF322NTO, ENCFF549AQZ, ENCFF666ATR 1670206920 ENCODE Processing Pipeline 7aba94998294dbd251278f7cea1edade https://www.encodeproject.org/files/ENCFF248AYM/@@download/ENCFF248AYM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF364EJS bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF322NTO, ENCFF542XCL 7014191 ENCODE Processing Pipeline 87a343e962424d3b07ed2c295d95bafa https://www.encodeproject.org/files/ENCFF364EJS/@@download/ENCFF364EJS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF307ZMU bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF322NTO, ENCFF542XCL, ENCFF549AQZ, ENCFF666ATR 7324633 ENCODE Processing Pipeline 107272410502da075b976ef42ff8b6ed https://www.encodeproject.org/files/ENCFF307ZMU/@@download/ENCFF307ZMU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF623FAW bed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF097DQG, ENCFF307ZMU, ENCFF364EJS, ENCFF419RSJ 766380 ENCODE Processing Pipeline 72ccb17b5552db1119c0b11fe3169e3e https://www.encodeproject.org/files/ENCFF623FAW/@@download/ENCFF623FAW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF153AVS bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF322NTO, ENCFF549AQZ, ENCFF666ATR 2179081635 ENCODE Processing Pipeline 8018cdfa70b2883b5d5ddf65b4d83fe0 https://www.encodeproject.org/files/ENCFF153AVS/@@download/ENCFF153AVS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF596FOJ bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF322NTO, ENCFF542XCL 1021392072 ENCODE Processing Pipeline 27d01efe497de2eb94450296734723bc https://www.encodeproject.org/files/ENCFF596FOJ/@@download/ENCFF596FOJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF676GTP bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF322NTO, ENCFF542XCL, ENCFF549AQZ, ENCFF666ATR 2560315695 ENCODE Processing Pipeline f4469c62ab7b98d9e427649f8f307b12 https://www.encodeproject.org/files/ENCFF676GTP/@@download/ENCFF676GTP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF230RZX bed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF097DQG, ENCFF307ZMU, ENCFF364EJS, ENCFF419RSJ 703284 ENCODE Processing Pipeline 8b8e2270112a22b3a88407493a23cf39 https://www.encodeproject.org/files/ENCFF230RZX/@@download/ENCFF230RZX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF649YFK bigBed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF623FAW 1726334 ENCODE Processing Pipeline d69fd2d84df130e06eb92b0c5fefa119 https://www.encodeproject.org/files/ENCFF649YFK/@@download/ENCFF649YFK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF779NGV bigBed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF006MAM 1564423 ENCODE Processing Pipeline dbc73cae4f08d2d7827199a9bfac9fbd https://www.encodeproject.org/files/ENCFF779NGV/@@download/ENCFF779NGV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF911BYP bed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF252PIK, ENCFF934HHY, ENCFF952CNK 737439 ENCODE Processing Pipeline 307e9ca674be889ee21a25aefce3e3d2 https://www.encodeproject.org/files/ENCFF911BYP/@@download/ENCFF911BYP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF804BYW bigBed narrowPeak optimal idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF911BYP 1355882 ENCODE Processing Pipeline 05c7de5cd4d4936f014a5af57665ea8d https://www.encodeproject.org/files/ENCFF804BYW/@@download/ENCFF804BYW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF952CNK bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 7118963 ENCODE Processing Pipeline 694a9800274d934f32a35573bd56f166 https://www.encodeproject.org/files/ENCFF952CNK/@@download/ENCFF952CNK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF618HFG bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2155394348 ENCODE Processing Pipeline 8399323608ec55625d8f8715fabf241f https://www.encodeproject.org/files/ENCFF618HFG/@@download/ENCFF618HFG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF637YIA bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF005DDP, ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2520937440 ENCODE Processing Pipeline 3ef8a8ff030360e4417dcbaaa14acbf5 https://www.encodeproject.org/files/ENCFF637YIA/@@download/ENCFF637YIA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF395XJK bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2129060789 ENCODE Processing Pipeline 1ac899447d94b8a8d0451843bbcf8356 https://www.encodeproject.org/files/ENCFF395XJK/@@download/ENCFF395XJK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF934HHY bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 7215031 ENCODE Processing Pipeline a06da6d17993a7d37f08181186114c24 https://www.encodeproject.org/files/ENCFF934HHY/@@download/ENCFF934HHY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF115LZL bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF952CNK 13238622 ENCODE Processing Pipeline 9eb35e07b046ec912bfbfe5f55016e78 https://www.encodeproject.org/files/ENCFF115LZL/@@download/ENCFF115LZL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF185QCW bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF005DDP, ENCFF585JBT, ENCFF592WAL, ENCFF901CND 2334143032 ENCODE Processing Pipeline 19ca658411a3c4309f8074ecce70f4b8 https://www.encodeproject.org/files/ENCFF185QCW/@@download/ENCFF185QCW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF406CMA bigWig fold change over control ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 1229220190 ENCODE Processing Pipeline d6f3800b18b91bc04f959b0291477e44 https://www.encodeproject.org/files/ENCFF406CMA/@@download/ENCFF406CMA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF252PIK bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF005DDP, ENCFF585JBT, ENCFF592WAL, ENCFF901CND 7255430 ENCODE Processing Pipeline bc0bfc72a7d88cb2ae92bc33c57848d5 https://www.encodeproject.org/files/ENCFF252PIK/@@download/ENCFF252PIK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF253PBZ bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF934HHY 13363507 ENCODE Processing Pipeline 30f266ee4a8f7311b40952110ac0eb49 https://www.encodeproject.org/files/ENCFF253PBZ/@@download/ENCFF253PBZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF006MAM bed narrowPeak conservative idr thresholded peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF252PIK, ENCFF934HHY, ENCFF952CNK 681596 ENCODE Processing Pipeline d751a1feaf091e3d0446985f75800516 https://www.encodeproject.org/files/ENCFF006MAM/@@download/ENCFF006MAM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF555BNM bigWig signal p-value ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 1157672969 ENCODE Processing Pipeline f54d87b643f3c68dd6f7576a55577925 https://www.encodeproject.org/files/ENCFF555BNM/@@download/ENCFF555BNM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF857XEV bigBed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1, 2 ENCFF252PIK 13225974 ENCODE Processing Pipeline e70a06b6a4fadb38b04d52ee7e87fe23 https://www.encodeproject.org/files/ENCFF857XEV/@@download/ENCFF857XEV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF407ARC fastq reads ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 1 76 paired-ended 2 ENCFF066XNQ 943084909 Bradley Bernstein, Broad 33fe2b9b11a7773f242b4ff7ee41c51b https://www.encodeproject.org/files/ENCFF407ARC/@@download/ENCFF407ARC.fastq.gz Illumina HiSeq 2000 /files/ENCFF274YMK/, /files/ENCFF335TOI/, /files/ENCFF375CUH/, /files/ENCFF802LTL/, /files/ENCFF863XGE/ released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF066XNQ fastq reads ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 1 76 paired-ended 1 ENCFF407ARC 932367982 Bradley Bernstein, Broad 732c010eb70f0f089707f65e67cfdd8d https://www.encodeproject.org/files/ENCFF066XNQ/@@download/ENCFF066XNQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF452ROQ/, /files/ENCFF527WMD/, /files/ENCFF584YEG/ released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF636UQF fastq reads ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 1 76 paired-ended 1 ENCFF907SOV 2349163051 Bradley Bernstein, Broad 5f1a8a3fdf032110c4081f43cec9efdd https://www.encodeproject.org/files/ENCFF636UQF/@@download/ENCFF636UQF.fastq.gz Illumina HiSeq 2000 /files/ENCFF163PYU/, /files/ENCFF522PVI/, /files/ENCFF639RMG/, /files/ENCFF716YLE/ released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF907SOV fastq reads ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 1 76 paired-ended 2 ENCFF636UQF 2387959055 Bradley Bernstein, Broad 0820663acf7cf8e59e2c71f632100a0f https://www.encodeproject.org/files/ENCFF907SOV/@@download/ENCFF907SOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF272GOE/, /files/ENCFF486LTO/, /files/ENCFF665BBC/, /files/ENCFF830CTU/ released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF545OHJ bam unfiltered alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 76 ENCFF066XNQ, ENCFF407ARC, ENCFF643CGH 2279157901 ENCODE Processing Pipeline 96f9d9aa6cb95010898e99d56376ea19 https://www.encodeproject.org/files/ENCFF545OHJ/@@download/ENCFF545OHJ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF365QIY bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 76 ENCFF066XNQ, ENCFF407ARC, ENCFF643CGH 1922284643 ENCODE Processing Pipeline 70aebb950f3de02716968b556da13ab2 https://www.encodeproject.org/files/ENCFF365QIY/@@download/ENCFF365QIY.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF606POP bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 76 ENCFF066XNQ, ENCFF407ARC, ENCFF807MUK 1921042812 ENCODE Processing Pipeline 913e39e5e1aa4829b7de5b2155a59ec5 https://www.encodeproject.org/files/ENCFF606POP/@@download/ENCFF606POP.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF378ADV bam unfiltered alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 76 ENCFF066XNQ, ENCFF407ARC, ENCFF807MUK 2272988541 ENCODE Processing Pipeline 65e5c24c504c43f3dca94986838729b5 https://www.encodeproject.org/files/ENCFF378ADV/@@download/ENCFF378ADV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF948BNE bam unfiltered alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 76 ENCFF636UQF, ENCFF643CGH, ENCFF907SOV 5661170498 ENCODE Processing Pipeline 7922afbb18ba2488af82ac9f48c6bb18 https://www.encodeproject.org/files/ENCFF948BNE/@@download/ENCFF948BNE.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF876WRS bam unfiltered alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 76 ENCFF636UQF, ENCFF807MUK, ENCFF907SOV 5642526118 ENCODE Processing Pipeline e8443c085c7729ddf88743cf6dc9d9b0 https://www.encodeproject.org/files/ENCFF876WRS/@@download/ENCFF876WRS.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF351ZOQ bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 76 ENCFF636UQF, ENCFF643CGH, ENCFF907SOV 4570461589 ENCODE Processing Pipeline 1b9ccb79a9aca871254e1f1709cff238 https://www.encodeproject.org/files/ENCFF351ZOQ/@@download/ENCFF351ZOQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF753PRR bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 76 ENCFF636UQF, ENCFF807MUK, ENCFF907SOV 4568468125 ENCODE Processing Pipeline 861a94929b29b982250a3a598f4155de https://www.encodeproject.org/files/ENCFF753PRR/@@download/ENCFF753PRR.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF010KOB bigWig signal p-value ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF196EDW, ENCFF351ZOQ, ENCFF356MAB 2279665520 ENCODE Processing Pipeline d7ed4fbaa1a4228ff716efd2e30e7907 https://www.encodeproject.org/files/ENCFF010KOB/@@download/ENCFF010KOB.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF019UYB bigWig signal p-value ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF196EDW, ENCFF351ZOQ, ENCFF356MAB, ENCFF365QIY 2401095901 ENCODE Processing Pipeline fcca2309160a95d090fd0e4f2530d38c https://www.encodeproject.org/files/ENCFF019UYB/@@download/ENCFF019UYB.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF392TUU bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF196EDW, ENCFF351ZOQ, ENCFF356MAB, ENCFF365QIY 7170339 ENCODE Processing Pipeline b3ad44c936bf38d9b00cf511c93cf087 https://www.encodeproject.org/files/ENCFF392TUU/@@download/ENCFF392TUU.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF269ZVM bigBed narrowPeak conservative idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF866SJZ 136661 ENCODE Processing Pipeline d206ec79d7306a7fd22f4aa10ca39096 https://www.encodeproject.org/files/ENCFF269ZVM/@@download/ENCFF269ZVM.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF218VVQ bigWig fold change over control ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF196EDW, ENCFF351ZOQ, ENCFF356MAB, ENCFF365QIY 2705057759 ENCODE Processing Pipeline 531bee39a4f6f8bf54ebabe3f83ec4e2 https://www.encodeproject.org/files/ENCFF218VVQ/@@download/ENCFF218VVQ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF850MJL bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF196EDW, ENCFF356MAB, ENCFF365QIY 6560876 ENCODE Processing Pipeline 42b309d0ef0914dcd80d4a5e6136ff42 https://www.encodeproject.org/files/ENCFF850MJL/@@download/ENCFF850MJL.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF374UWS bigBed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF190TKT 13216989 ENCODE Processing Pipeline d44a88b8b687507e673127a3c90c1234 https://www.encodeproject.org/files/ENCFF374UWS/@@download/ENCFF374UWS.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF764ZAS bigBed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF850MJL 12590939 ENCODE Processing Pipeline b7938dd22ab4a5c7ab606b9bd52e45a1 https://www.encodeproject.org/files/ENCFF764ZAS/@@download/ENCFF764ZAS.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF857CGY bigBed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF392TUU 12922672 ENCODE Processing Pipeline eea6b778efe76fd4ab5152c4cf74dd6e https://www.encodeproject.org/files/ENCFF857CGY/@@download/ENCFF857CGY.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF587KIN bigBed narrowPeak optimal idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF476NAK 175272 ENCODE Processing Pipeline c5145ffbf64f0698b3e197ec323cf4a5 https://www.encodeproject.org/files/ENCFF587KIN/@@download/ENCFF587KIN.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF452KWN bigWig fold change over control ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF196EDW, ENCFF351ZOQ, ENCFF356MAB 2418160499 ENCODE Processing Pipeline 25fae28dbd270d9dc143b00a4c7b1198 https://www.encodeproject.org/files/ENCFF452KWN/@@download/ENCFF452KWN.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF908HHN bigWig signal p-value ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF196EDW, ENCFF356MAB, ENCFF365QIY 2045834321 ENCODE Processing Pipeline f37c7cffe3aefb4b7ccd6b4cf4b399bd https://www.encodeproject.org/files/ENCFF908HHN/@@download/ENCFF908HHN.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF352KIA bigWig fold change over control ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF196EDW, ENCFF356MAB, ENCFF365QIY 1583293615 ENCODE Processing Pipeline 8347d059047f4f05d4efae09c7fae25d https://www.encodeproject.org/files/ENCFF352KIA/@@download/ENCFF352KIA.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF190TKT bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF196EDW, ENCFF351ZOQ, ENCFF356MAB 7076233 ENCODE Processing Pipeline 8394077f8bad834ddd541d6c1e60fa33 https://www.encodeproject.org/files/ENCFF190TKT/@@download/ENCFF190TKT.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF866SJZ bed narrowPeak conservative idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF190TKT, ENCFF392TUU, ENCFF419RSJ, ENCFF850MJL 33320 ENCODE Processing Pipeline 1fdbd06e54be596fc0df676f155aa8a1 https://www.encodeproject.org/files/ENCFF866SJZ/@@download/ENCFF866SJZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF476NAK bed narrowPeak optimal idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF190TKT, ENCFF392TUU, ENCFF419RSJ, ENCFF850MJL 55072 ENCODE Processing Pipeline 2c86a61b0af49a31cd163ca2cb4e2f7c https://www.encodeproject.org/files/ENCFF476NAK/@@download/ENCFF476NAK.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF725ALO bigWig fold change over control ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF567WDW, ENCFF618RNL, ENCFF753PRR 2414358655 ENCODE Processing Pipeline aacf0bc6731c55249c1e362d6aea5c97 https://www.encodeproject.org/files/ENCFF725ALO/@@download/ENCFF725ALO.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF888ATB bigWig fold change over control ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL 1584312020 ENCODE Processing Pipeline b6de0269eab4c1a5a25f2ca7e105ac9e https://www.encodeproject.org/files/ENCFF888ATB/@@download/ENCFF888ATB.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF504OUS bed narrowPeak conservative idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF258LFF, ENCFF656XHS, ENCFF819BDT 35446 ENCODE Processing Pipeline ca4f2c9132dabb1bebaf362860c1479f https://www.encodeproject.org/files/ENCFF504OUS/@@download/ENCFF504OUS.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF299FXW bigWig signal p-value ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL, ENCFF753PRR 2425593285 ENCODE Processing Pipeline 354247b59dea6d37fab68749ef2797eb https://www.encodeproject.org/files/ENCFF299FXW/@@download/ENCFF299FXW.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF490UGD bigWig signal p-value ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL 2022904803 ENCODE Processing Pipeline 4b7e7ca88eb3f34655b0e28373a7a11e https://www.encodeproject.org/files/ENCFF490UGD/@@download/ENCFF490UGD.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF991JFN bigWig fold change over control ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL, ENCFF753PRR 2717981426 ENCODE Processing Pipeline 4e6b3d984cae5c992e609b83bded9c87 https://www.encodeproject.org/files/ENCFF991JFN/@@download/ENCFF991JFN.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF656XHS bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF567WDW, ENCFF618RNL, ENCFF753PRR 7090119 ENCODE Processing Pipeline b2f915ba9058099b44bb9cf8e4072517 https://www.encodeproject.org/files/ENCFF656XHS/@@download/ENCFF656XHS.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF258LFF bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL 6554587 ENCODE Processing Pipeline c1dac2f9954ad5604b175a3aa377852c https://www.encodeproject.org/files/ENCFF258LFF/@@download/ENCFF258LFF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF617WLZ bigBed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF656XHS 13221934 ENCODE Processing Pipeline f73049d1c13435126678ebefaf427e3e https://www.encodeproject.org/files/ENCFF617WLZ/@@download/ENCFF617WLZ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF345IUH bigWig signal p-value ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF567WDW, ENCFF618RNL, ENCFF753PRR 2385343670 ENCODE Processing Pipeline 1ccb3f3bd770945eedf75c806519bad7 https://www.encodeproject.org/files/ENCFF345IUH/@@download/ENCFF345IUH.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF566WZO bigBed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF258LFF 12572440 ENCODE Processing Pipeline 22f9c6cb5266bf077bed610efc4f5b2f https://www.encodeproject.org/files/ENCFF566WZO/@@download/ENCFF566WZO.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF808UCP bed narrowPeak optimal idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF258LFF, ENCFF656XHS, ENCFF819BDT 56008 ENCODE Processing Pipeline 4d3ef79bacb47f74d1904f3c34d3db11 https://www.encodeproject.org/files/ENCFF808UCP/@@download/ENCFF808UCP.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF819BDT bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL, ENCFF753PRR 7191394 ENCODE Processing Pipeline d8eacd24855e7ff4d1db0ba7e6ddebd4 https://www.encodeproject.org/files/ENCFF819BDT/@@download/ENCFF819BDT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF865YHU bigBed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF819BDT 12935713 ENCODE Processing Pipeline a6808d2b755a38a1965793e623877eb8 https://www.encodeproject.org/files/ENCFF865YHU/@@download/ENCFF865YHU.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF988RUF bigBed narrowPeak conservative idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF504OUS 138478 ENCODE Processing Pipeline dc0f2816b958d48412e08a255a4b2986 https://www.encodeproject.org/files/ENCFF988RUF/@@download/ENCFF988RUF.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF265RJU bigBed narrowPeak optimal idr thresholded peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF808UCP 174740 ENCODE Processing Pipeline ff17288f011e6c9935292a3891fc1d49 https://www.encodeproject.org/files/ENCFF265RJU/@@download/ENCFF265RJU.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF877OHU fastq reads ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 1 101 paired-ended 1 ENCFF408NSX 3016635221 Michael Snyder, Stanford 89a25826f5711fc8a73ae73636b19f16 SRA:SRR6213617 https://www.encodeproject.org/files/ENCFF877OHU/@@download/ENCFF877OHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF509PJP fastq reads ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 1 101 paired-ended 1 ENCFF454MNE 3182298593 Michael Snyder, Stanford 514ee62eaa4a302118bee6a07ae83ea9 SRA:SRR6213618 https://www.encodeproject.org/files/ENCFF509PJP/@@download/ENCFF509PJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF408NSX fastq reads ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 1 101 paired-ended 2 ENCFF877OHU 3079544772 Michael Snyder, Stanford 9037ac0ff73af9a4c9808018f7cf1f87 SRA:SRR6213617 https://www.encodeproject.org/files/ENCFF408NSX/@@download/ENCFF408NSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF454MNE fastq reads ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 1 101 paired-ended 2 ENCFF509PJP 3246844371 Michael Snyder, Stanford 3ff3fc05567687c3b0f99a782854e66b SRA:SRR6213618 https://www.encodeproject.org/files/ENCFF454MNE/@@download/ENCFF454MNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF983KDE bam unfiltered alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF408NSX, ENCFF807MUK, ENCFF877OHU 6712404258 ENCODE Processing Pipeline 28f0c7fba434c3567fdc6e872585094c https://www.encodeproject.org/files/ENCFF983KDE/@@download/ENCFF983KDE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF191TSK bam unfiltered alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF454MNE, ENCFF509PJP, ENCFF807MUK 7062948403 ENCODE Processing Pipeline a44bbffd6fbf85c40028ac3d73a82791 https://www.encodeproject.org/files/ENCFF191TSK/@@download/ENCFF191TSK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF880HPO bam unfiltered alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF454MNE, ENCFF509PJP, ENCFF643CGH 7070980249 ENCODE Processing Pipeline a1185c682c7e22b6f908ce757a421df7 https://www.encodeproject.org/files/ENCFF880HPO/@@download/ENCFF880HPO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF943BGL bam unfiltered alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF408NSX, ENCFF643CGH, ENCFF877OHU 6720352561 ENCODE Processing Pipeline f353aae33a9f860c0f6d4943e44468a0 https://www.encodeproject.org/files/ENCFF943BGL/@@download/ENCFF943BGL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF879SEB bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF408NSX, ENCFF807MUK, ENCFF877OHU 5662162359 ENCODE Processing Pipeline 35382fccfa3681243e8523ea70bd5524 https://www.encodeproject.org/files/ENCFF879SEB/@@download/ENCFF879SEB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF283HYB bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF454MNE, ENCFF509PJP, ENCFF807MUK 5934258712 ENCODE Processing Pipeline 6cdcad9da27d4d64d5218dc334ee3524 https://www.encodeproject.org/files/ENCFF283HYB/@@download/ENCFF283HYB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF221FIU bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF408NSX, ENCFF643CGH, ENCFF877OHU 5665345904 ENCODE Processing Pipeline 2b8036c461217d1b8764303d2a3be326 https://www.encodeproject.org/files/ENCFF221FIU/@@download/ENCFF221FIU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF988IKU bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF454MNE, ENCFF509PJP, ENCFF643CGH 5937394744 ENCODE Processing Pipeline 77642ac3e3eff7a69105d84fc0ca704a https://www.encodeproject.org/files/ENCFF988IKU/@@download/ENCFF988IKU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF326LOU bigWig signal p-value ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF879SEB 1442788669 ENCODE Processing Pipeline 57679c7c97adb140f5a9f990d9c0d410 https://www.encodeproject.org/files/ENCFF326LOU/@@download/ENCFF326LOU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF644SHV bigWig signal p-value ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF283HYB 1253214567 ENCODE Processing Pipeline 207aef42fdabc87562fe3ab9cd096ba6 https://www.encodeproject.org/files/ENCFF644SHV/@@download/ENCFF644SHV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF572KHH bigWig signal p-value ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF283HYB, ENCFF879SEB 1983107508 ENCODE Processing Pipeline 1e592f410d63cd5eba0b6e667a04b2c4 https://www.encodeproject.org/files/ENCFF572KHH/@@download/ENCFF572KHH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF657HVI bigWig fold change over control ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF283HYB 1522494925 ENCODE Processing Pipeline 116a6eaf73b879268013e29fbd2cb56d https://www.encodeproject.org/files/ENCFF657HVI/@@download/ENCFF657HVI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF426QYQ bigWig fold change over control ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF879SEB 1472325861 ENCODE Processing Pipeline 211ee14b5d3f482cb12558b9f582c498 https://www.encodeproject.org/files/ENCFF426QYQ/@@download/ENCFF426QYQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF142FSN bigWig fold change over control ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF283HYB, ENCFF879SEB 2091620729 ENCODE Processing Pipeline fb1cbf60841863bf27900c823fef4ecb https://www.encodeproject.org/files/ENCFF142FSN/@@download/ENCFF142FSN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF578JBZ bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF283HYB 6927700 ENCODE Processing Pipeline e4ad790cbc06e7cd9f13035ba74e4fb2 https://www.encodeproject.org/files/ENCFF578JBZ/@@download/ENCFF578JBZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF664TWV bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF879SEB 6805466 ENCODE Processing Pipeline 8251efdb56f513c0d4134b6b3ad1c83c https://www.encodeproject.org/files/ENCFF664TWV/@@download/ENCFF664TWV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF993WOW bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF283HYB, ENCFF879SEB 7214880 ENCODE Processing Pipeline b4dd61c31c000dba690ccc9ece9db289 https://www.encodeproject.org/files/ENCFF993WOW/@@download/ENCFF993WOW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF747PXC bigBed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF578JBZ 13286050 ENCODE Processing Pipeline a898fc325da320eebae71d2dfc6cc93d https://www.encodeproject.org/files/ENCFF747PXC/@@download/ENCFF747PXC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF557OVZ bigBed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF664TWV 13366122 ENCODE Processing Pipeline d29d1e03e91df596d8fed38b3629ca09 https://www.encodeproject.org/files/ENCFF557OVZ/@@download/ENCFF557OVZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF500BLS bigBed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF993WOW 13140606 ENCODE Processing Pipeline 66c083b0a343af14268894452e9d4f07 https://www.encodeproject.org/files/ENCFF500BLS/@@download/ENCFF500BLS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF765UXE bed narrowPeak conservative idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF001TDO, ENCFF578JBZ, ENCFF664TWV, ENCFF993WOW 290119 ENCODE Processing Pipeline 97c8cc0392eedebeb02b7004d322ea70 https://www.encodeproject.org/files/ENCFF765UXE/@@download/ENCFF765UXE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF950TAT bigBed narrowPeak conservative idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF765UXE 621391 ENCODE Processing Pipeline 5fce1093fc9827a357d51c4bc0efaadf https://www.encodeproject.org/files/ENCFF950TAT/@@download/ENCFF950TAT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF195GMS bed narrowPeak optimal idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF001TDO, ENCFF578JBZ, ENCFF664TWV, ENCFF993WOW 329776 ENCODE Processing Pipeline 7fa2c987862785e3f13c74e1e8f4bdac https://www.encodeproject.org/files/ENCFF195GMS/@@download/ENCFF195GMS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF227ZEX bigBed narrowPeak optimal idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF195GMS 689076 ENCODE Processing Pipeline 9a227ab9ac10832ab118726e5f0f8b0a https://www.encodeproject.org/files/ENCFF227ZEX/@@download/ENCFF227ZEX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF781ECU bigWig signal p-value ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF988IKU 1319119646 ENCODE Processing Pipeline 8d0f12aa1b36bef839e6cc92e77b8a79 https://www.encodeproject.org/files/ENCFF781ECU/@@download/ENCFF781ECU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF727IYI bigWig signal p-value ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF221FIU 1211073102 ENCODE Processing Pipeline a50f2ae3b428deac3839b0402ee780f5 https://www.encodeproject.org/files/ENCFF727IYI/@@download/ENCFF727IYI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF949CEC bigWig signal p-value ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF221FIU, ENCFF988IKU 1976780603 ENCODE Processing Pipeline 51a7678c1a8b34ba0747c971d7515b0a https://www.encodeproject.org/files/ENCFF949CEC/@@download/ENCFF949CEC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF082QLJ bigWig fold change over control ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF988IKU 1525089699 ENCODE Processing Pipeline b6974d8430a17fb1ac03256dbd8f281c https://www.encodeproject.org/files/ENCFF082QLJ/@@download/ENCFF082QLJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF010HBM bigWig fold change over control ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF221FIU 1464794774 ENCODE Processing Pipeline 94a4a3509cdf173fe084cdbbfc6ad079 https://www.encodeproject.org/files/ENCFF010HBM/@@download/ENCFF010HBM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF752CCS bigWig fold change over control ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF221FIU, ENCFF988IKU 2083427395 ENCODE Processing Pipeline 0a54a9c1e92859a41dcb9288b7264121 https://www.encodeproject.org/files/ENCFF752CCS/@@download/ENCFF752CCS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF051ASE bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF988IKU 6860588 ENCODE Processing Pipeline f23ce5fc99bc8940f77004bc15187e83 https://www.encodeproject.org/files/ENCFF051ASE/@@download/ENCFF051ASE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF262ZLR bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF221FIU 6687688 ENCODE Processing Pipeline 8c70e6689f72ff3b8f6f3584486b8a42 https://www.encodeproject.org/files/ENCFF262ZLR/@@download/ENCFF262ZLR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF722SDX bigBed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF051ASE 13312249 ENCODE Processing Pipeline 4ec9dd86caef98fd88a48c97922de1d6 https://www.encodeproject.org/files/ENCFF722SDX/@@download/ENCFF722SDX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF852ADG bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF221FIU, ENCFF988IKU 7215110 ENCODE Processing Pipeline 88cfb8e38acd535e941f580a569cc981 https://www.encodeproject.org/files/ENCFF852ADG/@@download/ENCFF852ADG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF109OKL bigBed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF262ZLR 13369807 ENCODE Processing Pipeline 5905d19c2295756544c3b03cc782613f https://www.encodeproject.org/files/ENCFF109OKL/@@download/ENCFF109OKL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF686XLZ bigBed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF852ADG 13169181 ENCODE Processing Pipeline 551e2734fc4e44620796f6c8d768a095 https://www.encodeproject.org/files/ENCFF686XLZ/@@download/ENCFF686XLZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF085ARN bed narrowPeak conservative idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF051ASE, ENCFF262ZLR, ENCFF419RSJ, ENCFF852ADG 299873 ENCODE Processing Pipeline 017b49554718ab111644ca71001acbd3 https://www.encodeproject.org/files/ENCFF085ARN/@@download/ENCFF085ARN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF730KTP bigBed narrowPeak optimal idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF303TSY 694148 ENCODE Processing Pipeline bb9a0299c6cfd5a114018275e55a2eb9 https://www.encodeproject.org/files/ENCFF730KTP/@@download/ENCFF730KTP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF437QUV bigBed narrowPeak conservative idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF085ARN 637098 ENCODE Processing Pipeline 5dc2504789f4eef42192a212dea6d23c https://www.encodeproject.org/files/ENCFF437QUV/@@download/ENCFF437QUV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF303TSY bed narrowPeak optimal idr thresholded peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF051ASE, ENCFF262ZLR, ENCFF419RSJ, ENCFF852ADG 333858 ENCODE Processing Pipeline b4af5ca2759effb663b75927f28af398 https://www.encodeproject.org/files/ENCFF303TSY/@@download/ENCFF303TSY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF053NVZ bam unfiltered alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF029HOW, ENCFF270PKY, ENCFF807MUK 2795430322 ENCODE Processing Pipeline 282dec872ca549a413f127ce2224af3e https://www.encodeproject.org/files/ENCFF053NVZ/@@download/ENCFF053NVZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF599VLE bam unfiltered alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF587AYW, ENCFF625HJX, ENCFF807MUK 4210054617 ENCODE Processing Pipeline 12ecaf39b948a453f9bdbedc80c5443c https://www.encodeproject.org/files/ENCFF599VLE/@@download/ENCFF599VLE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF270PKY fastq reads ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF029HOW 1244830342 Michael Snyder, Stanford 3f99a2053ac0de0d11a063250fe0515d SRA:SRR6213389 https://www.encodeproject.org/files/ENCFF270PKY/@@download/ENCFF270PKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF625HJX fastq reads ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF587AYW 2026517277 Michael Snyder, Stanford 34e7c845bf08f4aa68fb77d5a2098f2f SRA:SRR6213388 https://www.encodeproject.org/files/ENCFF625HJX/@@download/ENCFF625HJX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF587AYW fastq reads ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF625HJX 2002230235 Michael Snyder, Stanford 3498c0ab8db07d2da692d83df313aa67 SRA:SRR6213388 https://www.encodeproject.org/files/ENCFF587AYW/@@download/ENCFF587AYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF029HOW fastq reads ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF270PKY 1268308602 Michael Snyder, Stanford 14125f57e0673efe92f0d77e88cfbdb3 SRA:SRR6213389 https://www.encodeproject.org/files/ENCFF029HOW/@@download/ENCFF029HOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF606YTH bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF029HOW, ENCFF270PKY, ENCFF807MUK 2297081950 ENCODE Processing Pipeline f3676d69056250ecb5f912f4b89afb69 https://www.encodeproject.org/files/ENCFF606YTH/@@download/ENCFF606YTH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF105XTZ bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF587AYW, ENCFF625HJX, ENCFF807MUK 3088621409 ENCODE Processing Pipeline fa44b66aca18378a29c61b2be22339c1 https://www.encodeproject.org/files/ENCFF105XTZ/@@download/ENCFF105XTZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF132IPA bigWig signal p-value ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF105XTZ, ENCFF581ZJL 997200201 ENCODE Processing Pipeline 93818e1791a9a34b81dad31df882fc17 https://www.encodeproject.org/files/ENCFF132IPA/@@download/ENCFF132IPA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF575NPT bigWig signal p-value ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF051LWI, ENCFF606YTH 952559059 ENCODE Processing Pipeline 1f5e2810b20e72ca1e680cf32975c9d6 https://www.encodeproject.org/files/ENCFF575NPT/@@download/ENCFF575NPT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF991LDI bigWig signal p-value ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF051LWI, ENCFF105XTZ, ENCFF581ZJL, ENCFF606YTH 1466910343 ENCODE Processing Pipeline 981227234370e0dbd05ffbc3a8b3a4d7 https://www.encodeproject.org/files/ENCFF991LDI/@@download/ENCFF991LDI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF058QVY bigWig fold change over control ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF105XTZ, ENCFF581ZJL 1020154338 ENCODE Processing Pipeline b49b84613e81733e117365f09918faae https://www.encodeproject.org/files/ENCFF058QVY/@@download/ENCFF058QVY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF393XSM bigWig fold change over control ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF051LWI, ENCFF606YTH 819598401 ENCODE Processing Pipeline ea1ae3b4ca5e57ae56400ba646d0379a https://www.encodeproject.org/files/ENCFF393XSM/@@download/ENCFF393XSM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF121DYK bigWig fold change over control ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF051LWI, ENCFF105XTZ, ENCFF581ZJL, ENCFF606YTH 1792280281 ENCODE Processing Pipeline db7302bba9d2ec991de5dbd4d83ac28e https://www.encodeproject.org/files/ENCFF121DYK/@@download/ENCFF121DYK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF625PVR bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF051LWI, ENCFF105XTZ, ENCFF581ZJL, ENCFF606YTH 7218596 ENCODE Processing Pipeline b7b93a32812f7a3a31bb504b9892b82d https://www.encodeproject.org/files/ENCFF625PVR/@@download/ENCFF625PVR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF236DDU bigBed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF307JUJ 13275144 ENCODE Processing Pipeline 3ad1ee6f9e325408564c814e56147bf6 https://www.encodeproject.org/files/ENCFF236DDU/@@download/ENCFF236DDU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF630ZHT bigBed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF734SUP 13312591 ENCODE Processing Pipeline 0e019aa21610b8f4faef864c35fc3852 https://www.encodeproject.org/files/ENCFF630ZHT/@@download/ENCFF630ZHT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF307JUJ bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF051LWI, ENCFF606YTH 6500043 ENCODE Processing Pipeline 5c65bc9a01516d7a56cae72f2baf034a https://www.encodeproject.org/files/ENCFF307JUJ/@@download/ENCFF307JUJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF734SUP bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF105XTZ, ENCFF581ZJL 6729307 ENCODE Processing Pipeline 74392f29101d939774a874931fce12b7 https://www.encodeproject.org/files/ENCFF734SUP/@@download/ENCFF734SUP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF897BXO bigBed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF625PVR 13161994 ENCODE Processing Pipeline 958ab50d4c8dfefd790191179d51e442 https://www.encodeproject.org/files/ENCFF897BXO/@@download/ENCFF897BXO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF039TGK bam unfiltered alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF587AYW, ENCFF625HJX, ENCFF643CGH 4211452628 ENCODE Processing Pipeline cf8c7ba68c7dc27b414784650ef55470 https://www.encodeproject.org/files/ENCFF039TGK/@@download/ENCFF039TGK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF921IIJ bam unfiltered alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF029HOW, ENCFF270PKY, ENCFF643CGH 2797308237 ENCODE Processing Pipeline da0282026166a345c2388807bc53cbe7 https://www.encodeproject.org/files/ENCFF921IIJ/@@download/ENCFF921IIJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF958WMW bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF029HOW, ENCFF270PKY, ENCFF643CGH 2298577133 ENCODE Processing Pipeline 9135d003f675408f1f632ee1ed976d5a https://www.encodeproject.org/files/ENCFF958WMW/@@download/ENCFF958WMW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF339RWU bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF587AYW, ENCFF625HJX, ENCFF643CGH 3090046520 ENCODE Processing Pipeline 763be60c3e3afa5a031952d4c9e2f101 https://www.encodeproject.org/files/ENCFF339RWU/@@download/ENCFF339RWU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF721IUB bigWig signal p-value ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF339RWU, ENCFF910IKB 997744443 ENCODE Processing Pipeline 768cc92fb09dde6f87665fb5731ddbb9 https://www.encodeproject.org/files/ENCFF721IUB/@@download/ENCFF721IUB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF569HHT bigWig signal p-value ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF227IZS, ENCFF958WMW 947339132 ENCODE Processing Pipeline 8f0feb3ed83528c9c7b3d0b037070ee5 https://www.encodeproject.org/files/ENCFF569HHT/@@download/ENCFF569HHT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF969RRF bigWig signal p-value ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF227IZS, ENCFF339RWU, ENCFF910IKB, ENCFF958WMW 1579711541 ENCODE Processing Pipeline 47bba7d94eaa883edf60654d1e6d6d17 https://www.encodeproject.org/files/ENCFF969RRF/@@download/ENCFF969RRF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF779CBB bigWig fold change over control ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF339RWU, ENCFF910IKB 1021113136 ENCODE Processing Pipeline cd120cdffca8469e5589f4230803de8d https://www.encodeproject.org/files/ENCFF779CBB/@@download/ENCFF779CBB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF519UPE bigWig fold change over control ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF227IZS, ENCFF958WMW 813736932 ENCODE Processing Pipeline e4f452412eb16f0235229fb501dcd610 https://www.encodeproject.org/files/ENCFF519UPE/@@download/ENCFF519UPE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF383OZJ bigWig fold change over control ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF227IZS, ENCFF339RWU, ENCFF910IKB, ENCFF958WMW 1805603872 ENCODE Processing Pipeline 4dbceca67d9f694a693f11fbfb2599f5 https://www.encodeproject.org/files/ENCFF383OZJ/@@download/ENCFF383OZJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF105NCA bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF339RWU, ENCFF910IKB 6603415 ENCODE Processing Pipeline e5a4dca9eda8d57b923ef6aa6cf65d04 https://www.encodeproject.org/files/ENCFF105NCA/@@download/ENCFF105NCA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF870UGO bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF227IZS, ENCFF958WMW 6390404 ENCODE Processing Pipeline 6e707f83fe85adc367acc96f8a61b714 https://www.encodeproject.org/files/ENCFF870UGO/@@download/ENCFF870UGO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF114RXP bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF227IZS, ENCFF339RWU, ENCFF910IKB, ENCFF958WMW 7176379 ENCODE Processing Pipeline 5325987842ebbe8b83818280d47de0bb https://www.encodeproject.org/files/ENCFF114RXP/@@download/ENCFF114RXP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF612DLO bigBed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF870UGO 13281708 ENCODE Processing Pipeline e6242a7c9e0f87652a5ac92bf4232846 https://www.encodeproject.org/files/ENCFF612DLO/@@download/ENCFF612DLO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF021XDU bigBed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF105NCA 13300832 ENCODE Processing Pipeline 68eb9858b3be232d663e34379f589e93 https://www.encodeproject.org/files/ENCFF021XDU/@@download/ENCFF021XDU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF191SVO bigBed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF114RXP 13153664 ENCODE Processing Pipeline c46e078ee1cef760afa5a7af0748a8d7 https://www.encodeproject.org/files/ENCFF191SVO/@@download/ENCFF191SVO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF136UPB bed narrowPeak conservative idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF105NCA, ENCFF114RXP, ENCFF419RSJ, ENCFF870UGO 321165 ENCODE Processing Pipeline 1212b8461e51602ead61133dc7f34de9 https://www.encodeproject.org/files/ENCFF136UPB/@@download/ENCFF136UPB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF625YZE bigBed narrowPeak conservative idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF136UPB 717066 ENCODE Processing Pipeline b9c9bf33f2b9a8e7ae9499f32d38b46f https://www.encodeproject.org/files/ENCFF625YZE/@@download/ENCFF625YZE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF539SXG bed narrowPeak optimal idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF105NCA, ENCFF114RXP, ENCFF419RSJ, ENCFF870UGO 372701 ENCODE Processing Pipeline 40f72df28c276c4dbe859b809f985ff0 https://www.encodeproject.org/files/ENCFF539SXG/@@download/ENCFF539SXG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF377OIN bigBed narrowPeak optimal idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF539SXG 800864 ENCODE Processing Pipeline ea8f5b90edd21a176571c54aa6b9f233 https://www.encodeproject.org/files/ENCFF377OIN/@@download/ENCFF377OIN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF976WHF bed narrowPeak conservative idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF307JUJ, ENCFF625PVR, ENCFF734SUP 273845 ENCODE Processing Pipeline af07b6f51bfe9fd037e268547e59f97d https://www.encodeproject.org/files/ENCFF976WHF/@@download/ENCFF976WHF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF315KJE bigBed narrowPeak conservative idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF976WHF 514844 ENCODE Processing Pipeline 3d804e776aefeee6be281194e5bacdb6 https://www.encodeproject.org/files/ENCFF315KJE/@@download/ENCFF315KJE.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF502KHR bed narrowPeak optimal idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF307JUJ, ENCFF625PVR, ENCFF734SUP 329872 ENCODE Processing Pipeline c2e187f6d861df3100e2acf5d12e3e45 https://www.encodeproject.org/files/ENCFF502KHR/@@download/ENCFF502KHR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF705PUY bigBed narrowPeak optimal idr thresholded peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF502KHR 583983 ENCODE Processing Pipeline d082b74162382443119b06c8aaca02eb https://www.encodeproject.org/files/ENCFF705PUY/@@download/ENCFF705PUY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF308HCL fastq reads ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 1 40 single-ended 2873030941 Xiang-Dong Fu, UCSD 0fa02e2b6fb5d111c15e164ee3c80beb https://www.encodeproject.org/files/ENCFF308HCL/@@download/ENCFF308HCL.fastq.gz Illumina HiSeq 2000 /files/ENCFF317LUD/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF486FVK fastq reads ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 1 40 single-ended 2611117964 Xiang-Dong Fu, UCSD c19c8e633ee18a4e8b6d4ec0be792076 https://www.encodeproject.org/files/ENCFF486FVK/@@download/ENCFF486FVK.fastq.gz Illumina HiSeq 2000 /files/ENCFF338QTL/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF876REW bam unfiltered alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 40 ENCFF486FVK, ENCFF807MUK 2605835043 ENCODE Processing Pipeline 8a55a73aab69e93816c96291fc9b094a https://www.encodeproject.org/files/ENCFF876REW/@@download/ENCFF876REW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF367OYT bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 40 ENCFF486FVK, ENCFF643CGH 343335450 ENCODE Processing Pipeline a2be2c44cecae3d2a9ced2a43ad1f0fa https://www.encodeproject.org/files/ENCFF367OYT/@@download/ENCFF367OYT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF889DCH bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 40 ENCFF486FVK, ENCFF807MUK 343831882 ENCODE Processing Pipeline b6d3da168c56665ede06974a7f5fcfb5 https://www.encodeproject.org/files/ENCFF889DCH/@@download/ENCFF889DCH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF691CZV bam unfiltered alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 40 ENCFF486FVK, ENCFF643CGH 2622040315 ENCODE Processing Pipeline babbd87ec4a89e1600ab79199e40ed6b https://www.encodeproject.org/files/ENCFF691CZV/@@download/ENCFF691CZV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF596NRP bam unfiltered alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 40 ENCFF308HCL, ENCFF643CGH 2877405610 ENCODE Processing Pipeline d5f01d61754d60d3b9efe40bc3467fa3 https://www.encodeproject.org/files/ENCFF596NRP/@@download/ENCFF596NRP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF895DLK bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 40 ENCFF308HCL, ENCFF643CGH 389329678 ENCODE Processing Pipeline f1249ffc958cc5e290be8596331f4c85 https://www.encodeproject.org/files/ENCFF895DLK/@@download/ENCFF895DLK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF630RXB bam unfiltered alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 40 ENCFF308HCL, ENCFF807MUK 2858593031 ENCODE Processing Pipeline 242f2b1e8f4b0b803bc7c2b98ed582d2 https://www.encodeproject.org/files/ENCFF630RXB/@@download/ENCFF630RXB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF103MEZ bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 40 ENCFF308HCL, ENCFF807MUK 389864842 ENCODE Processing Pipeline fe5f0bfecd676a403f492db0ef9583ef https://www.encodeproject.org/files/ENCFF103MEZ/@@download/ENCFF103MEZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF692UVD bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF325CNX, ENCFF889DCH 5715951 ENCODE Processing Pipeline a0705a7ca020cfd57a0ac4792910889f https://www.encodeproject.org/files/ENCFF692UVD/@@download/ENCFF692UVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF830DKY bigBed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF310EMX 13110722 ENCODE Processing Pipeline e0edd855b34ad67125e155a2cb2efa85 https://www.encodeproject.org/files/ENCFF830DKY/@@download/ENCFF830DKY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF966OSI bigWig signal p-value ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF103MEZ, ENCFF502LLI 567916033 ENCODE Processing Pipeline c4667253a86aa0a79b04676548ebb30c https://www.encodeproject.org/files/ENCFF966OSI/@@download/ENCFF966OSI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF058KNJ bigWig signal p-value ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF103MEZ, ENCFF325CNX, ENCFF502LLI, ENCFF889DCH 884947156 ENCODE Processing Pipeline 4c7cc15a590e0cdb118b0ca0cb0dd8dc https://www.encodeproject.org/files/ENCFF058KNJ/@@download/ENCFF058KNJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF035SWM bigWig fold change over control ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF103MEZ, ENCFF502LLI 319810814 ENCODE Processing Pipeline c2a944b6df5eef329c77d203846426ef https://www.encodeproject.org/files/ENCFF035SWM/@@download/ENCFF035SWM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF835LTJ bigWig signal p-value ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF325CNX, ENCFF889DCH 448973159 ENCODE Processing Pipeline 6c1408e83f12c22181cb81d334711588 https://www.encodeproject.org/files/ENCFF835LTJ/@@download/ENCFF835LTJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF187QGT bigWig fold change over control ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF325CNX, ENCFF889DCH 299768360 ENCODE Processing Pipeline 06db67ab6259b6964e8ac1ef6968ca44 https://www.encodeproject.org/files/ENCFF187QGT/@@download/ENCFF187QGT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF894WLR bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF103MEZ, ENCFF502LLI 5826405 ENCODE Processing Pipeline ff8b608eefb951b37466226b0b1091bd https://www.encodeproject.org/files/ENCFF894WLR/@@download/ENCFF894WLR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF310EMX bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF103MEZ, ENCFF325CNX, ENCFF502LLI, ENCFF889DCH 7122157 ENCODE Processing Pipeline d4f5f5d1c4cf8cc5828d8a3357a35691 https://www.encodeproject.org/files/ENCFF310EMX/@@download/ENCFF310EMX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF872PFO bigBed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF894WLR 13102577 ENCODE Processing Pipeline 7dee88718e2b3a3c3f0857d4fc80f6ad https://www.encodeproject.org/files/ENCFF872PFO/@@download/ENCFF872PFO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF959ALN bigBed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF692UVD 13015732 ENCODE Processing Pipeline dfa74c38634648111453d59115c9651f https://www.encodeproject.org/files/ENCFF959ALN/@@download/ENCFF959ALN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF785ACI bed narrowPeak optimal idr thresholded peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF001TDO, ENCFF310EMX, ENCFF692UVD, ENCFF894WLR 119841 ENCODE Processing Pipeline ad820677d3eca6a165b3fe883114c783 https://www.encodeproject.org/files/ENCFF785ACI/@@download/ENCFF785ACI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF472ISV bigWig fold change over control ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF103MEZ, ENCFF325CNX, ENCFF502LLI, ENCFF889DCH 675894834 ENCODE Processing Pipeline 7e6c1085cc983a3e5ba1a734c0a93340 https://www.encodeproject.org/files/ENCFF472ISV/@@download/ENCFF472ISV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF902BIO bigBed narrowPeak optimal idr thresholded peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF785ACI 309747 ENCODE Processing Pipeline ee1844e315410aadea249da5975baaca https://www.encodeproject.org/files/ENCFF902BIO/@@download/ENCFF902BIO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF684SIQ bigWig fold change over control ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF836GUS, ENCFF895DLK 320706863 ENCODE Processing Pipeline 891eac43f1952c93ddb7e2c6e282a76d https://www.encodeproject.org/files/ENCFF684SIQ/@@download/ENCFF684SIQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF202AJJ bigBed narrowPeak optimal idr thresholded peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF417RQZ 318609 ENCODE Processing Pipeline e669a5ef8022db0f2e7b07400a7ebeaf https://www.encodeproject.org/files/ENCFF202AJJ/@@download/ENCFF202AJJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF756RFF bigBed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF406DQD 13028561 ENCODE Processing Pipeline a738ccac7180a332d35260e69fdc9e1d https://www.encodeproject.org/files/ENCFF756RFF/@@download/ENCFF756RFF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF705IRU bigWig fold change over control ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF345ODV, ENCFF367OYT, ENCFF836GUS, ENCFF895DLK 678058362 ENCODE Processing Pipeline 8a955d8b9e1596b00bb6e8876efcc977 https://www.encodeproject.org/files/ENCFF705IRU/@@download/ENCFF705IRU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF520LVQ bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF836GUS, ENCFF895DLK 5693207 ENCODE Processing Pipeline 53608b8841d1ed2f0b04bd38491b88a1 https://www.encodeproject.org/files/ENCFF520LVQ/@@download/ENCFF520LVQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF406DQD bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF345ODV, ENCFF367OYT 5715249 ENCODE Processing Pipeline 6e837f49c821c5cfb45cf8e6e6192403 https://www.encodeproject.org/files/ENCFF406DQD/@@download/ENCFF406DQD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF648YCS bed narrowPeak conservative idr thresholded peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF406DQD, ENCFF419RSJ, ENCFF520LVQ, ENCFF817OVD 124115 ENCODE Processing Pipeline aa47afd5ccde8dc9dd799a5d2979c711 https://www.encodeproject.org/files/ENCFF648YCS/@@download/ENCFF648YCS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF591WWL bigWig signal p-value ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF836GUS, ENCFF895DLK 464512364 ENCODE Processing Pipeline dda47cef2e8a140b056a52ab156978a2 https://www.encodeproject.org/files/ENCFF591WWL/@@download/ENCFF591WWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF699GMR bigWig signal p-value ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF345ODV, ENCFF367OYT 450171934 ENCODE Processing Pipeline 65b74abd6549ba34c3b2cbcc6d91dfb4 https://www.encodeproject.org/files/ENCFF699GMR/@@download/ENCFF699GMR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF313SOS bigWig signal p-value ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF345ODV, ENCFF367OYT, ENCFF836GUS, ENCFF895DLK 875736267 ENCODE Processing Pipeline 007354a3c4d31738ef87ccb35671e91f https://www.encodeproject.org/files/ENCFF313SOS/@@download/ENCFF313SOS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF988DTQ bigWig fold change over control ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF345ODV, ENCFF367OYT 298799651 ENCODE Processing Pipeline 0b548cfc54051e1adb60a7b99c28fa40 https://www.encodeproject.org/files/ENCFF988DTQ/@@download/ENCFF988DTQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF817OVD bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF345ODV, ENCFF367OYT, ENCFF836GUS, ENCFF895DLK 7118090 ENCODE Processing Pipeline 589824b589c74b441b636d444acb40f6 https://www.encodeproject.org/files/ENCFF817OVD/@@download/ENCFF817OVD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF194LUL bigBed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF520LVQ 13152120 ENCODE Processing Pipeline 132f98651fadf0c68930b2c631c50a89 https://www.encodeproject.org/files/ENCFF194LUL/@@download/ENCFF194LUL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF905KPT bigBed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF817OVD 13140559 ENCODE Processing Pipeline a410a5628252fabc1024d0b58ae9f0d2 https://www.encodeproject.org/files/ENCFF905KPT/@@download/ENCFF905KPT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF619FVA bigBed narrowPeak conservative idr thresholded peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF648YCS 318241 ENCODE Processing Pipeline dcfffa9895783ad95931ea2813dbc3dc https://www.encodeproject.org/files/ENCFF619FVA/@@download/ENCFF619FVA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF417RQZ bed narrowPeak optimal idr thresholded peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF406DQD, ENCFF419RSJ, ENCFF520LVQ, ENCFF817OVD 124739 ENCODE Processing Pipeline f345e7332fcc3325d1877c89f65a3cfb https://www.encodeproject.org/files/ENCFF417RQZ/@@download/ENCFF417RQZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF629BGQ bam unfiltered alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF056SPK, ENCFF807MUK, ENCFF958CWG 5822513127 ENCODE Processing Pipeline a2e6127cceaa874d4391d6552421a800 https://www.encodeproject.org/files/ENCFF629BGQ/@@download/ENCFF629BGQ.bam hg19 released ENCFF574OYR bam unfiltered alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF105UNR, ENCFF807MUK, ENCFF875MOP 4443937691 ENCODE Processing Pipeline 68dd416e9300977ddb799890f88cf8f5 https://www.encodeproject.org/files/ENCFF574OYR/@@download/ENCFF574OYR.bam hg19 released ENCFF958CWG fastq reads ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF056SPK 2718929299 Michael Snyder, Stanford 0a95761ded66e8cb3319cfea651c5226 SRA:SRR5111314 https://www.encodeproject.org/files/ENCFF958CWG/@@download/ENCFF958CWG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF875MOP fastq reads ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF105UNR 1991518103 Michael Snyder, Stanford 283f7323042f6ecc2c11394030938ae1 SRA:SRR5111315 https://www.encodeproject.org/files/ENCFF875MOP/@@download/ENCFF875MOP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF105UNR fastq reads ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF875MOP 2044633178 Michael Snyder, Stanford 914f62c9e1a26a93815e23f5a1470885 SRA:SRR5111315 https://www.encodeproject.org/files/ENCFF105UNR/@@download/ENCFF105UNR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF056SPK fastq reads ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF958CWG 2653780639 Michael Snyder, Stanford c1b52aeb09ed92b64d666c7d008d474d SRA:SRR5111314 https://www.encodeproject.org/files/ENCFF056SPK/@@download/ENCFF056SPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF934FGG bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF056SPK, ENCFF807MUK, ENCFF958CWG 4976105196 ENCODE Processing Pipeline 2c982c4407923f36d1d21182181ddaa6 https://www.encodeproject.org/files/ENCFF934FGG/@@download/ENCFF934FGG.bam hg19 released ENCFF931KUQ bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF105UNR, ENCFF807MUK, ENCFF875MOP 3829564992 ENCODE Processing Pipeline fbaaab857efe86a81cb2732b6cc1891f https://www.encodeproject.org/files/ENCFF931KUQ/@@download/ENCFF931KUQ.bam hg19 released ENCFF087WAO bigWig signal p-value ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF049MPQ, ENCFF934FGG 1293177223 ENCODE Processing Pipeline 9bcc7d19e36ac41203485eaf40e2b5de https://www.encodeproject.org/files/ENCFF087WAO/@@download/ENCFF087WAO.bigWig hg19 released ENCFF529QSK bigWig fold change over control ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF049MPQ, ENCFF934FGG 1267512430 ENCODE Processing Pipeline 846f80769cff9f1bc2608d68bc6c2fb9 https://www.encodeproject.org/files/ENCFF529QSK/@@download/ENCFF529QSK.bigWig hg19 released ENCFF970HIB bam unfiltered alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF105UNR, ENCFF643CGH, ENCFF875MOP 4451992741 ENCODE Processing Pipeline 87780313230945dfe4973044d0ddd956 https://www.encodeproject.org/files/ENCFF970HIB/@@download/ENCFF970HIB.bam GRCh38 released ENCFF232FAS bam unfiltered alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF056SPK, ENCFF643CGH, ENCFF958CWG 5832957306 ENCODE Processing Pipeline 1a0741b8198d4035c44e6c3b71d59232 https://www.encodeproject.org/files/ENCFF232FAS/@@download/ENCFF232FAS.bam GRCh38 released ENCFF024GIB bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF105UNR, ENCFF643CGH, ENCFF875MOP 3833399693 ENCODE Processing Pipeline dd8ee43001715aa44458dcca9ec0a6d1 https://www.encodeproject.org/files/ENCFF024GIB/@@download/ENCFF024GIB.bam GRCh38 released ENCFF411XGJ bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF056SPK, ENCFF643CGH, ENCFF958CWG 4982989929 ENCODE Processing Pipeline 24a64686ed80b8cbd9daa665919c4d1b https://www.encodeproject.org/files/ENCFF411XGJ/@@download/ENCFF411XGJ.bam GRCh38 released ENCFF868ZXE bigWig signal p-value ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF024GIB, ENCFF426RDP 868569155 ENCODE Processing Pipeline 30785117933f376819fc24a885eed640 https://www.encodeproject.org/files/ENCFF868ZXE/@@download/ENCFF868ZXE.bigWig GRCh38 released ENCFF297ZEG bigWig signal p-value ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF291AFY, ENCFF411XGJ 1219547670 ENCODE Processing Pipeline 51551ec8cb1a3be3c095b41a756f815d https://www.encodeproject.org/files/ENCFF297ZEG/@@download/ENCFF297ZEG.bigWig GRCh38 released ENCFF148KUA bigWig signal p-value ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF024GIB, ENCFF291AFY, ENCFF411XGJ, ENCFF426RDP 1974409625 ENCODE Processing Pipeline 2e69f689b558e86a373774f55b28fb13 https://www.encodeproject.org/files/ENCFF148KUA/@@download/ENCFF148KUA.bigWig GRCh38 released ENCFF699ZAL bigWig fold change over control ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF024GIB, ENCFF426RDP 1005436597 ENCODE Processing Pipeline 303eabdeff26922ecb1208f9caf75b49 https://www.encodeproject.org/files/ENCFF699ZAL/@@download/ENCFF699ZAL.bigWig GRCh38 released ENCFF603RHL bigWig fold change over control ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF291AFY, ENCFF411XGJ 1277191489 ENCODE Processing Pipeline e0e3443a99b83b1bd65377c938165bc2 https://www.encodeproject.org/files/ENCFF603RHL/@@download/ENCFF603RHL.bigWig GRCh38 released ENCFF048SIP bigWig fold change over control ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF024GIB, ENCFF291AFY, ENCFF411XGJ, ENCFF426RDP 2059407879 ENCODE Processing Pipeline 4900031065e8cb42ccb3e3f59f0a6ddf https://www.encodeproject.org/files/ENCFF048SIP/@@download/ENCFF048SIP.bigWig GRCh38 released ENCFF996NKC bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF024GIB, ENCFF426RDP 6359390 ENCODE Processing Pipeline be127b573c563589eacec5514917a1da https://www.encodeproject.org/files/ENCFF996NKC/@@download/ENCFF996NKC.bed.gz GRCh38 released ENCFF741QHW bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF024GIB, ENCFF291AFY, ENCFF411XGJ, ENCFF426RDP 7179732 ENCODE Processing Pipeline a260ed654cff1e2fa8d383ba4d48fb67 https://www.encodeproject.org/files/ENCFF741QHW/@@download/ENCFF741QHW.bed.gz GRCh38 released ENCFF875KEV bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF291AFY, ENCFF411XGJ 6505883 ENCODE Processing Pipeline 7481e4467c7ddc8ac0ff915398f02618 https://www.encodeproject.org/files/ENCFF875KEV/@@download/ENCFF875KEV.bed.gz GRCh38 released ENCFF969XUT bigBed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF875KEV 13320719 ENCODE Processing Pipeline d0e74f9d22946b1625fad2ae47b52977 https://www.encodeproject.org/files/ENCFF969XUT/@@download/ENCFF969XUT.bigBed GRCh38 released ENCFF142QJK bigBed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF996NKC 13435153 ENCODE Processing Pipeline 23e02f45d6002fc7197e80dcb0e20b54 https://www.encodeproject.org/files/ENCFF142QJK/@@download/ENCFF142QJK.bigBed GRCh38 released ENCFF564TBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF042AWM 722276 ENCODE Processing Pipeline 138a5854f2f52cbde88e1f2b96229556 https://www.encodeproject.org/files/ENCFF564TBJ/@@download/ENCFF564TBJ.bigBed GRCh38 released ENCFF477WIJ bigBed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF741QHW 13342636 ENCODE Processing Pipeline c317be77651dd5c94b89079b14ef47b4 https://www.encodeproject.org/files/ENCFF477WIJ/@@download/ENCFF477WIJ.bigBed GRCh38 released ENCFF042AWM bed narrowPeak optimal idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF419RSJ, ENCFF741QHW, ENCFF875KEV, ENCFF996NKC 400635 ENCODE Processing Pipeline abd7e68e19df9cdb3ed3c4678190cf34 https://www.encodeproject.org/files/ENCFF042AWM/@@download/ENCFF042AWM.bed.gz GRCh38 released ENCFF561SDG bigBed narrowPeak conservative idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF189LCD 548739 ENCODE Processing Pipeline ec28b4140e22741512f619cb3b540557 https://www.encodeproject.org/files/ENCFF561SDG/@@download/ENCFF561SDG.bigBed GRCh38 released ENCFF189LCD bed narrowPeak conservative idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF419RSJ, ENCFF741QHW, ENCFF875KEV, ENCFF996NKC 274518 ENCODE Processing Pipeline 838355cca63b3bf31b4d1df9c6bfbece https://www.encodeproject.org/files/ENCFF189LCD/@@download/ENCFF189LCD.bed.gz GRCh38 released ENCFF969NFR bigWig signal p-value ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF583FAG, ENCFF931KUQ 894462127 ENCODE Processing Pipeline 4a2f6362b3c38b9dadb81252a5401275 https://www.encodeproject.org/files/ENCFF969NFR/@@download/ENCFF969NFR.bigWig hg19 released ENCFF132SRD bigWig fold change over control ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF583FAG, ENCFF931KUQ 1025309517 ENCODE Processing Pipeline 94a1e6103dcabd7073caedf7144848e1 https://www.encodeproject.org/files/ENCFF132SRD/@@download/ENCFF132SRD.bigWig hg19 released ENCFF893HPT bigWig fold change over control ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF931KUQ, ENCFF934FGG 2055145309 ENCODE Processing Pipeline 355dbc38e64e7821d396021b95c9f1b6 https://www.encodeproject.org/files/ENCFF893HPT/@@download/ENCFF893HPT.bigWig hg19 released ENCFF007RZY bigWig signal p-value ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF931KUQ, ENCFF934FGG 1690416318 ENCODE Processing Pipeline e99477f251ad3a9b3f17454ba71509e7 https://www.encodeproject.org/files/ENCFF007RZY/@@download/ENCFF007RZY.bigWig hg19 released ENCFF193LNB bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF049MPQ, ENCFF934FGG 6498031 ENCODE Processing Pipeline 11d21fe06c3882b875d79e12c9835779 https://www.encodeproject.org/files/ENCFF193LNB/@@download/ENCFF193LNB.bed.gz hg19 released ENCFF812MZB bed narrowPeak optimal idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF193LNB, ENCFF546YTN, ENCFF557POD 401448 ENCODE Processing Pipeline 49e790bfe0c4b66b44837cc08eccf03d https://www.encodeproject.org/files/ENCFF812MZB/@@download/ENCFF812MZB.bed.gz hg19 released ENCFF378KWQ bigBed narrowPeak optimal idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF812MZB 720621 ENCODE Processing Pipeline f3659c8e7f2f29766917c761da6b10d7 https://www.encodeproject.org/files/ENCFF378KWQ/@@download/ENCFF378KWQ.bigBed hg19 released ENCFF546YTN bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF931KUQ, ENCFF934FGG 7180290 ENCODE Processing Pipeline 6dbbe980548cb580f764bd79ac2a9812 https://www.encodeproject.org/files/ENCFF546YTN/@@download/ENCFF546YTN.bed.gz hg19 released ENCFF557POD bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF583FAG, ENCFF931KUQ 6357566 ENCODE Processing Pipeline 42a0cf28f4093b9795357387a02eeeed https://www.encodeproject.org/files/ENCFF557POD/@@download/ENCFF557POD.bed.gz hg19 released ENCFF201NDY bigBed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF557POD 13417694 ENCODE Processing Pipeline 1f33ca28938d985716c87fa5687c4f2f https://www.encodeproject.org/files/ENCFF201NDY/@@download/ENCFF201NDY.bigBed hg19 released ENCFF118BDZ bigBed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF193LNB 13301652 ENCODE Processing Pipeline 663473360b40aad43acb80b9304a6874 https://www.encodeproject.org/files/ENCFF118BDZ/@@download/ENCFF118BDZ.bigBed hg19 released ENCFF622UHS bigBed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF546YTN 13332157 ENCODE Processing Pipeline 4e1b17748c0f9d5fd8574ecc98f3b4fc https://www.encodeproject.org/files/ENCFF622UHS/@@download/ENCFF622UHS.bigBed hg19 released ENCFF343BNQ bed narrowPeak conservative idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF193LNB, ENCFF546YTN, ENCFF557POD 275476 ENCODE Processing Pipeline 0efbe2086711cc657e42d7b939b0d148 https://www.encodeproject.org/files/ENCFF343BNQ/@@download/ENCFF343BNQ.bed.gz hg19 released ENCFF340VEO bigBed narrowPeak conservative idr thresholded peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF343BNQ 548557 ENCODE Processing Pipeline cfcff2f48660232cf192308843089679 https://www.encodeproject.org/files/ENCFF340VEO/@@download/ENCFF340VEO.bigBed hg19 released ENCFF537WRS bam unfiltered alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPK, ENCFF002DUD, ENCFF807MUK 4179551160 ENCODE Processing Pipeline f54f704707240965407d9ce279bc0a97 https://www.encodeproject.org/files/ENCFF537WRS/@@download/ENCFF537WRS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF765CBH bam unfiltered alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPR, ENCFF002EGN, ENCFF807MUK 6840805246 ENCODE Processing Pipeline f4cb5854d98981044819ca508303915c https://www.encodeproject.org/files/ENCFF765CBH/@@download/ENCFF765CBH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF153TPD bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 1401130611 ENCODE Processing Pipeline 4b762ea60622fa148933c93a90551494 https://www.encodeproject.org/files/ENCFF153TPD/@@download/ENCFF153TPD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF002DPK fastq reads ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002DUD 1940714938 Michael Snyder, Stanford ebcd1f05c048457ef813454992f2224c SRA:SRR5111217 https://www.encodeproject.org/files/ENCFF002DPK/@@download/ENCFF002DPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF002DPR fastq reads ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGN 3122763342 Michael Snyder, Stanford 0e6288fe460ded307355f2bf667e2853 SRA:SRR5111218 https://www.encodeproject.org/files/ENCFF002DPR/@@download/ENCFF002DPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF002DUD fastq reads ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPK 1979110445 Michael Snyder, Stanford e009816acd673d497ce493d071d1ca61 SRA:SRR5111217 https://www.encodeproject.org/files/ENCFF002DUD/@@download/ENCFF002DUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF002EGN fastq reads ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPR 3231292067 Michael Snyder, Stanford f957bf55735314a1c9ba35fcac917876 SRA:SRR5111218 https://www.encodeproject.org/files/ENCFF002EGN/@@download/ENCFF002EGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF541ZRX bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 1775786223 ENCODE Processing Pipeline 8292ceecac742d87fd986764f288d918 https://www.encodeproject.org/files/ENCFF541ZRX/@@download/ENCFF541ZRX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF595WOT bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF931IXW 5473895 ENCODE Processing Pipeline b391f82d53c85e2ef3dee4acadb133f6 https://www.encodeproject.org/files/ENCFF595WOT/@@download/ENCFF595WOT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF960PAB bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 6662647 ENCODE Processing Pipeline 0eac0334544d617f38a707c49d66c71f https://www.encodeproject.org/files/ENCFF960PAB/@@download/ENCFF960PAB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF344TGN bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW, ENCFF931IXW 7010040 ENCODE Processing Pipeline 8d9132d3ee05a75d6cabc3d469886ed6 https://www.encodeproject.org/files/ENCFF344TGN/@@download/ENCFF344TGN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF925VOE bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF595WOT 11214415 ENCODE Processing Pipeline 89ea834de52d8fab07ed0ee7f763459c https://www.encodeproject.org/files/ENCFF925VOE/@@download/ENCFF925VOE.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF651CFD bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF960PAB 11281707 ENCODE Processing Pipeline c294b38e3b62c00b18ef0df6cb6bb27c https://www.encodeproject.org/files/ENCFF651CFD/@@download/ENCFF651CFD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF330BYY bed narrowPeak conservative idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF344TGN, ENCFF595WOT, ENCFF960PAB 84468 ENCODE Processing Pipeline 516960edb1c67d6f678dce51a9f6efae https://www.encodeproject.org/files/ENCFF330BYY/@@download/ENCFF330BYY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF190GZL bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF344TGN 11252960 ENCODE Processing Pipeline 726582b6bc7c8670ece5a107a425bbba https://www.encodeproject.org/files/ENCFF190GZL/@@download/ENCFF190GZL.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF314KRZ bed narrowPeak optimal idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF344TGN, ENCFF595WOT, ENCFF960PAB 119623 ENCODE Processing Pipeline 6792d61b88b8800d7d60aa74859ea231 https://www.encodeproject.org/files/ENCFF314KRZ/@@download/ENCFF314KRZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF960ZSI bigBed narrowPeak optimal idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF314KRZ 281307 ENCODE Processing Pipeline 30cb7b6c46ce0bab3d666eed7cc42fe5 https://www.encodeproject.org/files/ENCFF960ZSI/@@download/ENCFF960ZSI.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF479YVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF330BYY 187432 ENCODE Processing Pipeline 9e5d50839635dc2d368d3ca31436c9ec https://www.encodeproject.org/files/ENCFF479YVZ/@@download/ENCFF479YVZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF931IXW bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPK, ENCFF002DUD, ENCFF807MUK 3196737589 ENCODE Processing Pipeline c75704f4d6e565fb1d0ddf92243dc0fc https://www.encodeproject.org/files/ENCFF931IXW/@@download/ENCFF931IXW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF909JKW bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPR, ENCFF002EGN, ENCFF807MUK 5893009103 ENCODE Processing Pipeline 7e46a570e0f10577f208721131e0f549 https://www.encodeproject.org/files/ENCFF909JKW/@@download/ENCFF909JKW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF362MRF bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 1423451443 ENCODE Processing Pipeline d6c9d0142414bb183b32756edbb85c51 https://www.encodeproject.org/files/ENCFF362MRF/@@download/ENCFF362MRF.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF513YRC bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF931IXW 974192314 ENCODE Processing Pipeline 40c379bd84209d440f9a9782442889cb https://www.encodeproject.org/files/ENCFF513YRC/@@download/ENCFF513YRC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF355MDC bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW, ENCFF931IXW 1839928997 ENCODE Processing Pipeline 046f954cd9179c79291a352166d9790e https://www.encodeproject.org/files/ENCFF355MDC/@@download/ENCFF355MDC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF431LTJ bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF931IXW 972460468 ENCODE Processing Pipeline c15a5e665a003b2f264904efe6282c2c https://www.encodeproject.org/files/ENCFF431LTJ/@@download/ENCFF431LTJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF738TKB bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 1785708396 ENCODE Processing Pipeline 602514dd8abdd61a31d84e3752f1a4c3 https://www.encodeproject.org/files/ENCFF738TKB/@@download/ENCFF738TKB.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF884CSA bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW, ENCFF931IXW 2101478438 ENCODE Processing Pipeline f33f5fb89d74bcf030fa7b011326024f https://www.encodeproject.org/files/ENCFF884CSA/@@download/ENCFF884CSA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF077UUI bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF931IXW 5694423 ENCODE Processing Pipeline 11a1691bb4db6c0265ab1fe1653ad5bb https://www.encodeproject.org/files/ENCFF077UUI/@@download/ENCFF077UUI.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF145SYZ bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF219RVG 11254575 ENCODE Processing Pipeline 3be9b993c54dae4442782a0a24491cf3 https://www.encodeproject.org/files/ENCFF145SYZ/@@download/ENCFF145SYZ.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF946SUD bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 6796580 ENCODE Processing Pipeline 4e5ad619e5c5250523ad54e9782f723d https://www.encodeproject.org/files/ENCFF946SUD/@@download/ENCFF946SUD.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF350EZO bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF077UUI 11253788 ENCODE Processing Pipeline 523fdbc719d1c0a60a607bcc606ac627 https://www.encodeproject.org/files/ENCFF350EZO/@@download/ENCFF350EZO.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF997LED bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF946SUD 11284784 ENCODE Processing Pipeline 9567f2b6a43e0ce6cc8abf07ce476a58 https://www.encodeproject.org/files/ENCFF997LED/@@download/ENCFF997LED.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF219RVG bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW, ENCFF931IXW 7078527 ENCODE Processing Pipeline 01c5ef500bec849cb8004d301213a05b https://www.encodeproject.org/files/ENCFF219RVG/@@download/ENCFF219RVG.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF114RER bam unfiltered alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPK, ENCFF002DUD, ENCFF643CGH 4184148329 ENCODE Processing Pipeline c7b1cd99990afda340ad530f6bd60452 https://www.encodeproject.org/files/ENCFF114RER/@@download/ENCFF114RER.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF015TAN bam unfiltered alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPR, ENCFF002EGN, ENCFF643CGH 6852665651 ENCODE Processing Pipeline aba452eaf4f3cd459853eb53e43310de https://www.encodeproject.org/files/ENCFF015TAN/@@download/ENCFF015TAN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF126FTH bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPK, ENCFF002DUD, ENCFF643CGH 3199254662 ENCODE Processing Pipeline c572e017d4ba251ffe3c8a14255e5b77 https://www.encodeproject.org/files/ENCFF126FTH/@@download/ENCFF126FTH.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF008AZP bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPR, ENCFF002EGN, ENCFF643CGH 5897168162 ENCODE Processing Pipeline ba715268bc071f2c229b0adf751ea84a https://www.encodeproject.org/files/ENCFF008AZP/@@download/ENCFF008AZP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF662UNB bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF126FTH, ENCFF426RDP 1027404316 ENCODE Processing Pipeline b598562a5d308852ff9ce743c08be4e6 https://www.encodeproject.org/files/ENCFF662UNB/@@download/ENCFF662UNB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF473URL bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF008AZP, ENCFF291AFY, ENCFF426RDP 1402408836 ENCODE Processing Pipeline eb13e01b8dea5417cf6de8df106be8ba https://www.encodeproject.org/files/ENCFF473URL/@@download/ENCFF473URL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF370DGU bigWig signal p-value ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF008AZP, ENCFF126FTH, ENCFF291AFY, ENCFF426RDP 1807324136 ENCODE Processing Pipeline 735ce7f54c5e02eb35a59cb2fe6b7d90 https://www.encodeproject.org/files/ENCFF370DGU/@@download/ENCFF370DGU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF006TZM bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF126FTH, ENCFF426RDP 972607958 ENCODE Processing Pipeline 54fd27f5a15f69762ad962b440890f44 https://www.encodeproject.org/files/ENCFF006TZM/@@download/ENCFF006TZM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF509QHP bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF008AZP, ENCFF291AFY, ENCFF426RDP 1778398621 ENCODE Processing Pipeline 6c431852e77de00de7a7e2515061f7cf https://www.encodeproject.org/files/ENCFF509QHP/@@download/ENCFF509QHP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF373OIB bigWig fold change over control ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF008AZP, ENCFF126FTH, ENCFF291AFY, ENCFF426RDP 2103000133 ENCODE Processing Pipeline fc7c4b82a0f0a2d146052542a88a1a3a https://www.encodeproject.org/files/ENCFF373OIB/@@download/ENCFF373OIB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF516LZH bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF761VRT 11302219 ENCODE Processing Pipeline 010f2aa4984698d92916a58d97caab03 https://www.encodeproject.org/files/ENCFF516LZH/@@download/ENCFF516LZH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF907IUT bed narrowPeak conservative idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF477SSD, ENCFF521WPO, ENCFF761VRT 87475 ENCODE Processing Pipeline 798cb2d4a5ba7c3dfb47a8594956be25 https://www.encodeproject.org/files/ENCFF907IUT/@@download/ENCFF907IUT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF071GMA bigBed narrowPeak conservative idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF907IUT 192855 ENCODE Processing Pipeline d0eef857d82039d26525d69f23bfc356 https://www.encodeproject.org/files/ENCFF071GMA/@@download/ENCFF071GMA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF761VRT bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF008AZP, ENCFF291AFY, ENCFF426RDP 6668733 ENCODE Processing Pipeline fa4b335572e144c212f1fe2448d6af66 https://www.encodeproject.org/files/ENCFF761VRT/@@download/ENCFF761VRT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF521WPO bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF008AZP, ENCFF126FTH, ENCFF291AFY, ENCFF426RDP 7017917 ENCODE Processing Pipeline e4ff6ad2cb8f95a03caf4179a19195fc https://www.encodeproject.org/files/ENCFF521WPO/@@download/ENCFF521WPO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF589ALX bigBed narrowPeak optimal idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF907UNK 284952 ENCODE Processing Pipeline 9aa2557477179e3f10e2057ba67865b0 https://www.encodeproject.org/files/ENCFF589ALX/@@download/ENCFF589ALX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF477SSD bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF126FTH, ENCFF426RDP 5472464 ENCODE Processing Pipeline fe1879a68242997675f21fc450533717 https://www.encodeproject.org/files/ENCFF477SSD/@@download/ENCFF477SSD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF907UNK bed narrowPeak optimal idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF477SSD, ENCFF521WPO, ENCFF761VRT 121577 ENCODE Processing Pipeline 919a946ad31e25a5fa68a4924d5db904 https://www.encodeproject.org/files/ENCFF907UNK/@@download/ENCFF907UNK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF422VAD bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF477SSD 11223829 ENCODE Processing Pipeline 8fe246f572ea222ca1e1bc9e633539e0 https://www.encodeproject.org/files/ENCFF422VAD/@@download/ENCFF422VAD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF975WUZ bigBed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF521WPO 11274544 ENCODE Processing Pipeline 454d4e46c6eeb68106efca38934e83c4 https://www.encodeproject.org/files/ENCFF975WUZ/@@download/ENCFF975WUZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF397PVC bigBed narrowPeak conservative idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF481CJE 169561 ENCODE Processing Pipeline 4a0deb54436f1a6be19b1fd6ce5425e6 https://www.encodeproject.org/files/ENCFF397PVC/@@download/ENCFF397PVC.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF836SJY bed narrowPeak optimal idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF077UUI, ENCFF219RVG, ENCFF946SUD 99715 ENCODE Processing Pipeline e58f10d97806b7dab03e0705e0213540 https://www.encodeproject.org/files/ENCFF836SJY/@@download/ENCFF836SJY.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF481CJE bed narrowPeak conservative idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF077UUI, ENCFF219RVG, ENCFF946SUD 71542 ENCODE Processing Pipeline d4fc4fe71912d3fac65a7682422f6e77 https://www.encodeproject.org/files/ENCFF481CJE/@@download/ENCFF481CJE.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF295TFC bigBed narrowPeak optimal idr thresholded peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF836SJY 206314 ENCODE Processing Pipeline 22861b726e0b0206cc28371c39158913 https://www.encodeproject.org/files/ENCFF295TFC/@@download/ENCFF295TFC.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF326BXX fastq reads ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF207NIS 1976699881 Michael Snyder, Stanford e5bf0447af1c57e80086cc6ceb50ec72 SRA:SRR6212721 https://www.encodeproject.org/files/ENCFF326BXX/@@download/ENCFF326BXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF207NIS fastq reads ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF326BXX 1996630203 Michael Snyder, Stanford 45953fbfc1d33d0a5162554f95cf3697 SRA:SRR6212721 https://www.encodeproject.org/files/ENCFF207NIS/@@download/ENCFF207NIS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF217XOV fastq reads ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF599IKS 1940012856 Michael Snyder, Stanford a57332b0115cc3d949742b87f10bfec0 SRA:SRR6212722 https://www.encodeproject.org/files/ENCFF217XOV/@@download/ENCFF217XOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF599IKS fastq reads ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF217XOV 1961086906 Michael Snyder, Stanford 7feb78134bb937e9b477f981e2b60b78 SRA:SRR6212722 https://www.encodeproject.org/files/ENCFF599IKS/@@download/ENCFF599IKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF992NYF bam unfiltered alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF217XOV, ENCFF599IKS, ENCFF643CGH 4237230822 ENCODE Processing Pipeline e2e4196e8a0903a1a6a45ae906bc8cb5 https://www.encodeproject.org/files/ENCFF992NYF/@@download/ENCFF992NYF.bam GRCh38 released low read depth ENCFF259XPA bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF217XOV, ENCFF599IKS, ENCFF643CGH 3501347226 ENCODE Processing Pipeline 118e68c5da27845e09a9981eb9d58431 https://www.encodeproject.org/files/ENCFF259XPA/@@download/ENCFF259XPA.bam GRCh38 released low read depth ENCFF652QJT bam unfiltered alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF207NIS, ENCFF326BXX, ENCFF643CGH 4321128978 ENCODE Processing Pipeline 25d85b8c64d224f50bef0f0105113ebc https://www.encodeproject.org/files/ENCFF652QJT/@@download/ENCFF652QJT.bam GRCh38 released low read depth ENCFF153QLL bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF207NIS, ENCFF326BXX, ENCFF643CGH 3539626268 ENCODE Processing Pipeline aa839266379f2b3e79c0dc37cc837532 https://www.encodeproject.org/files/ENCFF153QLL/@@download/ENCFF153QLL.bam GRCh38 released low read depth ENCFF670VTD bigWig signal p-value ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF259XPA 942331698 ENCODE Processing Pipeline 7e84a6815893a3c3c3fde27ae32576e0 https://www.encodeproject.org/files/ENCFF670VTD/@@download/ENCFF670VTD.bigWig GRCh38 released low read depth ENCFF461DMV bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF259XPA 6655933 ENCODE Processing Pipeline 01a95c77831e19fba6e77544197f87e8 https://www.encodeproject.org/files/ENCFF461DMV/@@download/ENCFF461DMV.bed.gz GRCh38 released low read depth ENCFF237YNN bed narrowPeak conservative idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF461DMV, ENCFF654PAG, ENCFF693NGB 473181 ENCODE Processing Pipeline 0dafb2fb7171a8807435302b7540e39f https://www.encodeproject.org/files/ENCFF237YNN/@@download/ENCFF237YNN.bed.gz GRCh38 released low read depth ENCFF434JZR bigBed narrowPeak conservative idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF237YNN 978062 ENCODE Processing Pipeline 21acfb89f6c51e2b7713f46c3d437eb3 https://www.encodeproject.org/files/ENCFF434JZR/@@download/ENCFF434JZR.bigBed GRCh38 released low read depth ENCFF104FAR bigWig signal p-value ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF153QLL, ENCFF227IZS, ENCFF259XPA, ENCFF910IKB 1532331307 ENCODE Processing Pipeline 575ee1e07ef401302de34c62367605e6 https://www.encodeproject.org/files/ENCFF104FAR/@@download/ENCFF104FAR.bigWig GRCh38 released low read depth ENCFF478LGP bigWig signal p-value ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF153QLL, ENCFF910IKB 1062698064 ENCODE Processing Pipeline b6ba64450bfa6f819bc533281e560b2d https://www.encodeproject.org/files/ENCFF478LGP/@@download/ENCFF478LGP.bigWig GRCh38 released low read depth ENCFF459NBC bigBed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF654PAG 13278860 ENCODE Processing Pipeline c5eab561c651fdf73c036289080b4587 https://www.encodeproject.org/files/ENCFF459NBC/@@download/ENCFF459NBC.bigBed GRCh38 released low read depth ENCFF055DFW bigWig fold change over control ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF259XPA 1031837101 ENCODE Processing Pipeline 476750bb3dce28faccad1ed228474b98 https://www.encodeproject.org/files/ENCFF055DFW/@@download/ENCFF055DFW.bigWig GRCh38 released low read depth ENCFF654PAG bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF153QLL, ENCFF227IZS, ENCFF259XPA, ENCFF910IKB 7175014 ENCODE Processing Pipeline 8d78b7c98d6cb22cf8325070ad31c89c https://www.encodeproject.org/files/ENCFF654PAG/@@download/ENCFF654PAG.bed.gz GRCh38 released low read depth ENCFF401MLE bigBed narrowPeak optimal idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF375RDB 1077567 ENCODE Processing Pipeline f09f4667cda7c05d647bdcd5d3a291be https://www.encodeproject.org/files/ENCFF401MLE/@@download/ENCFF401MLE.bigBed GRCh38 released low read depth ENCFF122YRT bigWig fold change over control ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF153QLL, ENCFF910IKB 1079707732 ENCODE Processing Pipeline 8e5d1c6d0e09f4fc00324ab2c9c65a4e https://www.encodeproject.org/files/ENCFF122YRT/@@download/ENCFF122YRT.bigWig GRCh38 released low read depth ENCFF226GXE bigWig fold change over control ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF153QLL, ENCFF227IZS, ENCFF259XPA, ENCFF910IKB 1953766781 ENCODE Processing Pipeline 0d3bf2012a4b7c1850655141c2b34b05 https://www.encodeproject.org/files/ENCFF226GXE/@@download/ENCFF226GXE.bigWig GRCh38 released low read depth ENCFF693NGB bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF153QLL, ENCFF910IKB 6499306 ENCODE Processing Pipeline 331f42a9b13f9101bac8ee2dabe94a12 https://www.encodeproject.org/files/ENCFF693NGB/@@download/ENCFF693NGB.bed.gz GRCh38 released low read depth ENCFF581YCO bigBed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF693NGB 13436142 ENCODE Processing Pipeline 5778475db3ea2c490f0cd02f417c1c50 https://www.encodeproject.org/files/ENCFF581YCO/@@download/ENCFF581YCO.bigBed GRCh38 released low read depth ENCFF393LRH bigBed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF461DMV 13372150 ENCODE Processing Pipeline 3ba5cf971ba3d6846de915af029b8c6d https://www.encodeproject.org/files/ENCFF393LRH/@@download/ENCFF393LRH.bigBed GRCh38 released low read depth ENCFF375RDB bed narrowPeak optimal idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF461DMV, ENCFF654PAG, ENCFF693NGB 538133 ENCODE Processing Pipeline df1598e8f6f9854c15424d47603f41b4 https://www.encodeproject.org/files/ENCFF375RDB/@@download/ENCFF375RDB.bed.gz GRCh38 released low read depth ENCFF199LSN bam unfiltered alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF217XOV, ENCFF599IKS, ENCFF807MUK 4232901415 ENCODE Processing Pipeline 9705f0efeee3cf2d3fe488ab5ab1403f https://www.encodeproject.org/files/ENCFF199LSN/@@download/ENCFF199LSN.bam hg19 released low read depth ENCFF243CZA bam unfiltered alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF207NIS, ENCFF326BXX, ENCFF807MUK 4316998653 ENCODE Processing Pipeline 87e20a17dd2eff1d83e493cc69350329 https://www.encodeproject.org/files/ENCFF243CZA/@@download/ENCFF243CZA.bam hg19 released low read depth ENCFF293ZMY bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF217XOV, ENCFF599IKS, ENCFF807MUK 3498520277 ENCODE Processing Pipeline 2238ea91437782a174b663c8d5151870 https://www.encodeproject.org/files/ENCFF293ZMY/@@download/ENCFF293ZMY.bam hg19 released low read depth ENCFF065XRG bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF207NIS, ENCFF326BXX, ENCFF807MUK 3537256767 ENCODE Processing Pipeline 4b5c77541926fc1551c3053d5d03936c https://www.encodeproject.org/files/ENCFF065XRG/@@download/ENCFF065XRG.bam hg19 released low read depth ENCFF113AIB bigWig fold change over control ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF065XRG, ENCFF581ZJL 1063805362 ENCODE Processing Pipeline 8b0e803c98925e085058517a1be54c01 https://www.encodeproject.org/files/ENCFF113AIB/@@download/ENCFF113AIB.bigWig hg19 released low read depth ENCFF279LBB bigWig signal p-value ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF065XRG, ENCFF581ZJL 1096559525 ENCODE Processing Pipeline b119f4b0be61f37494d61f58663d07d7 https://www.encodeproject.org/files/ENCFF279LBB/@@download/ENCFF279LBB.bigWig hg19 released low read depth ENCFF461LTA bigWig fold change over control ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF065XRG, ENCFF293ZMY, ENCFF581ZJL 1964023096 ENCODE Processing Pipeline ec75f98d98a96b6e8ea5f8a938cdfd41 https://www.encodeproject.org/files/ENCFF461LTA/@@download/ENCFF461LTA.bigWig hg19 released low read depth ENCFF920IJY bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF065XRG, ENCFF581ZJL 6522057 ENCODE Processing Pipeline 5eabd6928477c3a58ca0ae21b1f17a75 https://www.encodeproject.org/files/ENCFF920IJY/@@download/ENCFF920IJY.bed.gz hg19 released low read depth ENCFF756CUT bigBed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF920IJY 13447363 ENCODE Processing Pipeline d9ee1a8340dadef5a2b87f0d78661319 https://www.encodeproject.org/files/ENCFF756CUT/@@download/ENCFF756CUT.bigBed hg19 released low read depth ENCFF433BHI bigBed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF343JJX 13305495 ENCODE Processing Pipeline 49c5fa061ef02e43526f888d80978591 https://www.encodeproject.org/files/ENCFF433BHI/@@download/ENCFF433BHI.bigBed hg19 released low read depth ENCFF634YJK bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF293ZMY 6662684 ENCODE Processing Pipeline e54b64c6a6acb14134508fc5c8ce4087 https://www.encodeproject.org/files/ENCFF634YJK/@@download/ENCFF634YJK.bed.gz hg19 released low read depth ENCFF529GVQ bed narrowPeak conservative idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF343JJX, ENCFF634YJK, ENCFF920IJY 487577 ENCODE Processing Pipeline b18946ccaf1da4ada50e3619780dfc68 https://www.encodeproject.org/files/ENCFF529GVQ/@@download/ENCFF529GVQ.bed.gz hg19 released low read depth ENCFF425RKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF004WYV 1101382 ENCODE Processing Pipeline 38468dfb24e52b0c6d2b77d67acca934 https://www.encodeproject.org/files/ENCFF425RKJ/@@download/ENCFF425RKJ.bigBed hg19 released low read depth ENCFF192MWJ bigWig fold change over control ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF293ZMY 1030920475 ENCODE Processing Pipeline c0d96abf4a34444b23b08427850b34ac https://www.encodeproject.org/files/ENCFF192MWJ/@@download/ENCFF192MWJ.bigWig hg19 released low read depth ENCFF343JJX bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF065XRG, ENCFF293ZMY, ENCFF581ZJL 7206115 ENCODE Processing Pipeline cba0e2fa24564ec8b1cf8f14f0545dfe https://www.encodeproject.org/files/ENCFF343JJX/@@download/ENCFF343JJX.bed.gz hg19 released low read depth ENCFF908ZGK bigWig signal p-value ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF293ZMY 996196427 ENCODE Processing Pipeline 4c6ec2c5df5b44671869ba438296000e https://www.encodeproject.org/files/ENCFF908ZGK/@@download/ENCFF908ZGK.bigWig hg19 released low read depth ENCFF954VHB bigWig signal p-value ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF065XRG, ENCFF293ZMY, ENCFF581ZJL 1867182111 ENCODE Processing Pipeline b477a757bf8b8398c1d1948ff5664ab1 https://www.encodeproject.org/files/ENCFF954VHB/@@download/ENCFF954VHB.bigWig hg19 released low read depth ENCFF032VMO bigBed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF634YJK 13352476 ENCODE Processing Pipeline b4e1f31b6bebfad43b5e07050fb40ae6 https://www.encodeproject.org/files/ENCFF032VMO/@@download/ENCFF032VMO.bigBed hg19 released low read depth ENCFF223QPY bigBed narrowPeak conservative idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF529GVQ 995241 ENCODE Processing Pipeline 9b4a93af9ee43c30bcbdebf94e51c3b1 https://www.encodeproject.org/files/ENCFF223QPY/@@download/ENCFF223QPY.bigBed hg19 released low read depth ENCFF004WYV bed narrowPeak optimal idr thresholded peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF343JJX, ENCFF634YJK, ENCFF920IJY 557721 ENCODE Processing Pipeline f1a92ff86172ca7ec73d6ddfff66ecc4 https://www.encodeproject.org/files/ENCFF004WYV/@@download/ENCFF004WYV.bed.gz hg19 released low read depth ENCFF252THD bam unfiltered alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBK, ENCFF807MUK 1339154239 ENCODE Processing Pipeline f92119b1f046e1834ce261727da77020 https://www.encodeproject.org/files/ENCFF252THD/@@download/ENCFF252THD.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF798BDQ bam unfiltered alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBI, ENCFF807MUK 1162166181 ENCODE Processing Pipeline 209ea2cbcfa16fce3ce69aece18bd063 https://www.encodeproject.org/files/ENCFF798BDQ/@@download/ENCFF798BDQ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF661BAC bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 606674361 ENCODE Processing Pipeline 9b8012e1fa453fe404388783822810db https://www.encodeproject.org/files/ENCFF661BAC/@@download/ENCFF661BAC.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF099UEJ bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 450042450 ENCODE Processing Pipeline 9554edbb34560a11e75f97e59c1196a0 https://www.encodeproject.org/files/ENCFF099UEJ/@@download/ENCFF099UEJ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF095PSZ bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 473658598 ENCODE Processing Pipeline ac3319758661473bb5cb5989711d6b6b https://www.encodeproject.org/files/ENCFF095PSZ/@@download/ENCFF095PSZ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF316YYL bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 907494542 ENCODE Processing Pipeline ba3543b772c2ddcddc5cc34dc686314b https://www.encodeproject.org/files/ENCFF316YYL/@@download/ENCFF316YYL.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF405SED bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 472378358 ENCODE Processing Pipeline 82c29176c60b6f3a9452822a121f0e36 https://www.encodeproject.org/files/ENCFF405SED/@@download/ENCFF405SED.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF071CIY bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 1031893413 ENCODE Processing Pipeline cf94b7a786e241b3018e96db23251b88 https://www.encodeproject.org/files/ENCFF071CIY/@@download/ENCFF071CIY.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF617ITM bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 5690731 ENCODE Processing Pipeline 47e8e4e99c49eeeb1c8a78ebac1096c1 https://www.encodeproject.org/files/ENCFF617ITM/@@download/ENCFF617ITM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF032IBC bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 4360735 ENCODE Processing Pipeline 1e89a159174aa11f8b800978c23cddb4 https://www.encodeproject.org/files/ENCFF032IBC/@@download/ENCFF032IBC.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF450ZAX bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF617ITM 13150893 ENCODE Processing Pipeline a5164f51e1eb7b8199f38bdfaf9ee375 https://www.encodeproject.org/files/ENCFF450ZAX/@@download/ENCFF450ZAX.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF378WOB bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF032IBC 10742790 ENCODE Processing Pipeline de8720c34679f3bd1d3fd1370311004a https://www.encodeproject.org/files/ENCFF378WOB/@@download/ENCFF378WOB.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF700KUP bigBed narrowPeak optimal idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF987VNY 225447 ENCODE Processing Pipeline 7611217311594d351755974e9ddc79ad https://www.encodeproject.org/files/ENCFF700KUP/@@download/ENCFF700KUP.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF230YWY bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 6600810 ENCODE Processing Pipeline 42987e044018b6ca7bb5e8f4d0fdb977 https://www.encodeproject.org/files/ENCFF230YWY/@@download/ENCFF230YWY.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF885TLC bed narrowPeak conservative idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF032IBC, ENCFF230YWY, ENCFF617ITM 48809 ENCODE Processing Pipeline 1cac586249e786fa9b03c6b0ff37bb13 https://www.encodeproject.org/files/ENCFF885TLC/@@download/ENCFF885TLC.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF987VNY bed narrowPeak optimal idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF032IBC, ENCFF230YWY, ENCFF617ITM 90032 ENCODE Processing Pipeline f36811713a2ca68357a6462a9526b2a4 https://www.encodeproject.org/files/ENCFF987VNY/@@download/ENCFF987VNY.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF048WWZ bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF230YWY 13290313 ENCODE Processing Pipeline 083b0939a558de773703e0401fd7350a https://www.encodeproject.org/files/ENCFF048WWZ/@@download/ENCFF048WWZ.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF319AUS bigBed narrowPeak conservative idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF885TLC 131871 ENCODE Processing Pipeline fcdf70e6248b5f964739eb3a7ef4017a https://www.encodeproject.org/files/ENCFF319AUS/@@download/ENCFF319AUS.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF002EBI fastq reads ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 804969536 Michael Snyder, Stanford e0f222593b83b834a14f9d8ddd37b5ab SRA:SRR5111174 https://www.encodeproject.org/files/ENCFF002EBI/@@download/ENCFF002EBI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF002EBK fastq reads ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 968584398 Michael Snyder, Stanford d5dda4819dba0849fb3488e887dcaf21 SRA:SRR5111173 https://www.encodeproject.org/files/ENCFF002EBK/@@download/ENCFF002EBK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF672FSO bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBI, ENCFF807MUK 838429818 ENCODE Processing Pipeline a26700ec2287ea9bdc67e5b161d291b1 https://www.encodeproject.org/files/ENCFF672FSO/@@download/ENCFF672FSO.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF177GPP bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBK, ENCFF807MUK 860442904 ENCODE Processing Pipeline 0167cdd675db5b82b018267b99551e26 https://www.encodeproject.org/files/ENCFF177GPP/@@download/ENCFF177GPP.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF161UDX bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 607383472 ENCODE Processing Pipeline d8c6a3e4aa7b2dd31be255478961c96e https://www.encodeproject.org/files/ENCFF161UDX/@@download/ENCFF161UDX.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF030GCY bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 470498717 ENCODE Processing Pipeline 40b400b49b46e07b2295a05eaeeeb86b https://www.encodeproject.org/files/ENCFF030GCY/@@download/ENCFF030GCY.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF307KUU bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 897565660 ENCODE Processing Pipeline 3d9718015a30474f513c71542171a3e0 https://www.encodeproject.org/files/ENCFF307KUU/@@download/ENCFF307KUU.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF555GBI bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 455159254 ENCODE Processing Pipeline 1adeef6cf64bfa8ab51b2e210e0de4f5 https://www.encodeproject.org/files/ENCFF555GBI/@@download/ENCFF555GBI.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF630MMB bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 473763160 ENCODE Processing Pipeline 8b5521ba628d62c9859a2e17dbbe4efb https://www.encodeproject.org/files/ENCFF630MMB/@@download/ENCFF630MMB.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF423RVZ bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 996578283 ENCODE Processing Pipeline 99bccb5c1d44cc55eb25c3df6f3d80de https://www.encodeproject.org/files/ENCFF423RVZ/@@download/ENCFF423RVZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF905VIC bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 6738545 ENCODE Processing Pipeline 6b75de55d0db26aa3bc12a2c6d66f215 https://www.encodeproject.org/files/ENCFF905VIC/@@download/ENCFF905VIC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF558QUM bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 5904108 ENCODE Processing Pipeline b80370bc9652a73cb54822a4fd3c9a3b https://www.encodeproject.org/files/ENCFF558QUM/@@download/ENCFF558QUM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF533MTU bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 4533441 ENCODE Processing Pipeline ea922578f229cf2741b1dd492b421187 https://www.encodeproject.org/files/ENCFF533MTU/@@download/ENCFF533MTU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF994LDV bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF558QUM 13202994 ENCODE Processing Pipeline 8d6cb7ddd0415806726a0323d408f033 https://www.encodeproject.org/files/ENCFF994LDV/@@download/ENCFF994LDV.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF864VFN bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF905VIC 13295523 ENCODE Processing Pipeline 0dd016c890d9497c7d3e6cd80f513df1 https://www.encodeproject.org/files/ENCFF864VFN/@@download/ENCFF864VFN.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF071TTV bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF533MTU 10958223 ENCODE Processing Pipeline ab8de6f3067257556768a26ad5ca1e02 https://www.encodeproject.org/files/ENCFF071TTV/@@download/ENCFF071TTV.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF719EJR bam unfiltered alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBI, ENCFF643CGH 1166797748 ENCODE Processing Pipeline 5b5af29b2d67ef662b08990808a6edab https://www.encodeproject.org/files/ENCFF719EJR/@@download/ENCFF719EJR.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF880ODJ bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBK, ENCFF643CGH 859812040 ENCODE Processing Pipeline dbbbab4563e8df5497395badf2af1024 https://www.encodeproject.org/files/ENCFF880ODJ/@@download/ENCFF880ODJ.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF302ALX bam unfiltered alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBK, ENCFF643CGH 1345235706 ENCODE Processing Pipeline 631c557fe9bef24adc5c3f3576fe471d https://www.encodeproject.org/files/ENCFF302ALX/@@download/ENCFF302ALX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF726AYE bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBI, ENCFF643CGH 837797765 ENCODE Processing Pipeline 2bf210d389812a4e36bf06d0f9923f56 https://www.encodeproject.org/files/ENCFF726AYE/@@download/ENCFF726AYE.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF173QPA bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF726AYE 519467225 ENCODE Processing Pipeline 45bdfbda660452ab5cbc2eefb7611fab https://www.encodeproject.org/files/ENCFF173QPA/@@download/ENCFF173QPA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF755KGD bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF880ODJ 536526373 ENCODE Processing Pipeline 883eb14d13e0167e0aa70c9e17733dba https://www.encodeproject.org/files/ENCFF755KGD/@@download/ENCFF755KGD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF012XTI bigWig signal p-value ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF577FNG, ENCFF726AYE, ENCFF880ODJ 984888283 ENCODE Processing Pipeline e3839e3f8e77ec55b0d55d6ef660ab8c https://www.encodeproject.org/files/ENCFF012XTI/@@download/ENCFF012XTI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF768POO bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF726AYE 457152909 ENCODE Processing Pipeline 1c1b9d758e089b9bfe3e210548916ffc https://www.encodeproject.org/files/ENCFF768POO/@@download/ENCFF768POO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF641ZLF bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF880ODJ 469919275 ENCODE Processing Pipeline 6e083a7b7831efd1ab3dc472d459db95 https://www.encodeproject.org/files/ENCFF641ZLF/@@download/ENCFF641ZLF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF786JIS bigWig fold change over control ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF577FNG, ENCFF726AYE, ENCFF880ODJ 1031254357 ENCODE Processing Pipeline 1da3fe4efe5cdc36a62d350648c4815c https://www.encodeproject.org/files/ENCFF786JIS/@@download/ENCFF786JIS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF694OAS bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF726AYE 5624816 ENCODE Processing Pipeline 542b62ec94b073e2b47f0aea5c2bee1d https://www.encodeproject.org/files/ENCFF694OAS/@@download/ENCFF694OAS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF908MOD bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF880ODJ 4340622 ENCODE Processing Pipeline 7a733374cec02db3a79c657b51575f64 https://www.encodeproject.org/files/ENCFF908MOD/@@download/ENCFF908MOD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF326CMY bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF577FNG, ENCFF726AYE, ENCFF880ODJ 6552272 ENCODE Processing Pipeline 177939b5b1b40e14a1170bef4ce58660 https://www.encodeproject.org/files/ENCFF326CMY/@@download/ENCFF326CMY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF249TAE bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF908MOD 10768589 ENCODE Processing Pipeline 1542814c5cc0568033e287c7d7ac1acb https://www.encodeproject.org/files/ENCFF249TAE/@@download/ENCFF249TAE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF540QOV bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF694OAS 13154105 ENCODE Processing Pipeline 68f495af9172528bbcc5d4fa59d99a0a https://www.encodeproject.org/files/ENCFF540QOV/@@download/ENCFF540QOV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF401CPB bigBed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF326CMY 13304966 ENCODE Processing Pipeline 81a003f94d4b6405c10c5d759c11aae1 https://www.encodeproject.org/files/ENCFF401CPB/@@download/ENCFF401CPB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF876CPX bed narrowPeak conservative idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF326CMY, ENCFF419RSJ, ENCFF694OAS, ENCFF908MOD 50145 ENCODE Processing Pipeline 4ea5f35f9ef0ebea8231a27f1ae5909e https://www.encodeproject.org/files/ENCFF876CPX/@@download/ENCFF876CPX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF911MZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF876CPX 134745 ENCODE Processing Pipeline 7c51a453692d766ae410646286370e08 https://www.encodeproject.org/files/ENCFF911MZZ/@@download/ENCFF911MZZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF820LKT bed narrowPeak optimal idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF326CMY, ENCFF419RSJ, ENCFF694OAS, ENCFF908MOD 91248 ENCODE Processing Pipeline 222287580210015da4086a1003fa371e https://www.encodeproject.org/files/ENCFF820LKT/@@download/ENCFF820LKT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF245PFI bigBed narrowPeak optimal idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF820LKT 228906 ENCODE Processing Pipeline fe8f474369e0e46242ffedb849362570 https://www.encodeproject.org/files/ENCFF245PFI/@@download/ENCFF245PFI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF379WER bed narrowPeak conservative idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF533MTU, ENCFF558QUM, ENCFF905VIC 42338 ENCODE Processing Pipeline e47fc91f1c855e2d37f4de9792ce89a0 https://www.encodeproject.org/files/ENCFF379WER/@@download/ENCFF379WER.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF667XSX bigBed narrowPeak conservative idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF379WER 123344 ENCODE Processing Pipeline af1fd737de256391a293bbeb10775976 https://www.encodeproject.org/files/ENCFF667XSX/@@download/ENCFF667XSX.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF232DLG bigBed narrowPeak optimal idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF485MXM 170430 ENCODE Processing Pipeline ab2ac1934322834f59afc0b31bd9fda8 https://www.encodeproject.org/files/ENCFF232DLG/@@download/ENCFF232DLG.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF485MXM bed narrowPeak optimal idr thresholded peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF533MTU, ENCFF558QUM, ENCFF905VIC 76440 ENCODE Processing Pipeline cfb6a3095d48e09ffa9b902b0cdc7fa7 https://www.encodeproject.org/files/ENCFF485MXM/@@download/ENCFF485MXM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF320POS bam unfiltered alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJY, ENCFF002EKG, ENCFF807MUK 6625552744 ENCODE Processing Pipeline 2d5913a0f3d69e09074d06ed016aa735 https://www.encodeproject.org/files/ENCFF320POS/@@download/ENCFF320POS.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF722IYA bam unfiltered alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKE, ENCFF002EKF, ENCFF807MUK 6316239440 ENCODE Processing Pipeline dcdc2b60d8a0d857e72d0789452520a9 https://www.encodeproject.org/files/ENCFF722IYA/@@download/ENCFF722IYA.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002EJY fastq reads ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EKG 3083542465 Michael Snyder, Stanford df0ba4ef7e3fd269a9df5068acccc1c0 https://www.encodeproject.org/files/ENCFF002EJY/@@download/ENCFF002EJY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002EKE fastq reads ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKF 2887114861 Michael Snyder, Stanford 780660a12f5c18b66beba401c47726bd https://www.encodeproject.org/files/ENCFF002EKE/@@download/ENCFF002EKE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002EKF fastq reads ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EKE 2901389630 Michael Snyder, Stanford b427aa41b808413ac78f532788aaa6f9 https://www.encodeproject.org/files/ENCFF002EKF/@@download/ENCFF002EKF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002EKG fastq reads ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EJY 3089899634 Michael Snyder, Stanford da18ef4bb0bf45833822ef932dc1712e https://www.encodeproject.org/files/ENCFF002EKG/@@download/ENCFF002EKG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF834MZI bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJY, ENCFF002EKG, ENCFF807MUK 5616613475 ENCODE Processing Pipeline 725b4d65029277247b9f0e28bd55d461 https://www.encodeproject.org/files/ENCFF834MZI/@@download/ENCFF834MZI.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF305PAV bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKE, ENCFF002EKF, ENCFF807MUK 5524842002 ENCODE Processing Pipeline 87aa7709b374461b5a13925c1f5acfbc https://www.encodeproject.org/files/ENCFF305PAV/@@download/ENCFF305PAV.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF041HZB bigWig signal p-value ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH 1351072584 ENCODE Processing Pipeline 89983e1c198f7f6d9b2c85c223b323f2 https://www.encodeproject.org/files/ENCFF041HZB/@@download/ENCFF041HZB.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF112IOH bigWig fold change over control ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH 1638761332 ENCODE Processing Pipeline d38f5f0616b510dd532b8204c0b63df6 https://www.encodeproject.org/files/ENCFF112IOH/@@download/ENCFF112IOH.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF852FET bam unfiltered alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJY, ENCFF002EKG, ENCFF643CGH 6637510423 ENCODE Processing Pipeline b36baafe7e5acfe391cbdea85f425f73 https://www.encodeproject.org/files/ENCFF852FET/@@download/ENCFF852FET.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF793MBH bam unfiltered alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKE, ENCFF002EKF, ENCFF643CGH 6329172332 ENCODE Processing Pipeline 4ab823f850c4386d7fc0ca59dd351abf https://www.encodeproject.org/files/ENCFF793MBH/@@download/ENCFF793MBH.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF266ESX bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKE, ENCFF002EKF, ENCFF643CGH 5534388718 ENCODE Processing Pipeline 63e94a1edc5c23caa20845de4ae2108c https://www.encodeproject.org/files/ENCFF266ESX/@@download/ENCFF266ESX.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF929ENS bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJY, ENCFF002EKG, ENCFF643CGH 5625221603 ENCODE Processing Pipeline f69e7f978385d5f084563aab956698eb https://www.encodeproject.org/files/ENCFF929ENS/@@download/ENCFF929ENS.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF832DNH bigWig signal p-value ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF266ESX, ENCFF419UIG 1377808859 ENCODE Processing Pipeline 602b3cb120b27a46fcc69c70359476bc https://www.encodeproject.org/files/ENCFF832DNH/@@download/ENCFF832DNH.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF618IMI bigWig signal p-value ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF266ESX, ENCFF419UIG, ENCFF929ENS 2153804540 ENCODE Processing Pipeline dcac73634b12f50ec735a8cc4b6c1acc https://www.encodeproject.org/files/ENCFF618IMI/@@download/ENCFF618IMI.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF246NEQ bigWig signal p-value ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF929ENS 1146455560 ENCODE Processing Pipeline 23e230259ff607bd04a1ef865ef10b5e https://www.encodeproject.org/files/ENCFF246NEQ/@@download/ENCFF246NEQ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF490AIE bigWig fold change over control ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF266ESX, ENCFF419UIG 1642753257 ENCODE Processing Pipeline 9e7a7c6ed004c782e547bbe58d315516 https://www.encodeproject.org/files/ENCFF490AIE/@@download/ENCFF490AIE.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF906VPB bigWig fold change over control ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF929ENS 1244370138 ENCODE Processing Pipeline 0498d2dcc92fbb283c8af2d5c05fe960 https://www.encodeproject.org/files/ENCFF906VPB/@@download/ENCFF906VPB.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF326HQV bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF929ENS 5508572 ENCODE Processing Pipeline 3fc2e6701f7c42bc0cb3df4b35ec8c30 https://www.encodeproject.org/files/ENCFF326HQV/@@download/ENCFF326HQV.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF604QPX bigWig fold change over control ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF266ESX, ENCFF419UIG, ENCFF929ENS 2273329912 ENCODE Processing Pipeline 2c009055b4580ab20be6280268308125 https://www.encodeproject.org/files/ENCFF604QPX/@@download/ENCFF604QPX.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF005HJG bigBed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF007LHN 11562169 ENCODE Processing Pipeline f78961644781f8c3302735945bbeab1d https://www.encodeproject.org/files/ENCFF005HJG/@@download/ENCFF005HJG.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF678CGL bed narrowPeak conservative idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF007LHN, ENCFF225RGJ, ENCFF326HQV, ENCFF419RSJ 127045 ENCODE Processing Pipeline e46d51c2d006cab1cc8ebcefb1b34baf https://www.encodeproject.org/files/ENCFF678CGL/@@download/ENCFF678CGL.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF340TTL bigBed narrowPeak conservative idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF678CGL 315054 ENCODE Processing Pipeline 6ca3c697c67bef46a3037b1c609f5f79 https://www.encodeproject.org/files/ENCFF340TTL/@@download/ENCFF340TTL.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF668MDZ bigBed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF225RGJ 11575330 ENCODE Processing Pipeline 4b83640b7ac4a7f01e570b6454cd4e61 https://www.encodeproject.org/files/ENCFF668MDZ/@@download/ENCFF668MDZ.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF886BLL bigBed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF326HQV 11316444 ENCODE Processing Pipeline 5d1a11df309e061b6791b132d86e8cfe https://www.encodeproject.org/files/ENCFF886BLL/@@download/ENCFF886BLL.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF137JHO bed narrowPeak optimal idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF007LHN, ENCFF225RGJ, ENCFF326HQV, ENCFF419RSJ 208118 ENCODE Processing Pipeline 0e9a992a2b7997ff20f4923ff2f1a1eb https://www.encodeproject.org/files/ENCFF137JHO/@@download/ENCFF137JHO.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF225RGJ bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF266ESX, ENCFF419UIG 6288181 ENCODE Processing Pipeline 4116cf2dc608cfadf9786271542d7f1a https://www.encodeproject.org/files/ENCFF225RGJ/@@download/ENCFF225RGJ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF970SRA bigBed narrowPeak optimal idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF137JHO 440134 ENCODE Processing Pipeline c1bde3d355131b152fa98f9d722373f5 https://www.encodeproject.org/files/ENCFF970SRA/@@download/ENCFF970SRA.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF007LHN bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF266ESX, ENCFF419UIG, ENCFF929ENS 7022333 ENCODE Processing Pipeline 40022a272accb7e9d00ea38ea090763a https://www.encodeproject.org/files/ENCFF007LHN/@@download/ENCFF007LHN.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF645XJY bigWig signal p-value ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF806YIH, ENCFF834MZI 1145763774 ENCODE Processing Pipeline 86ded1abf6f1d227f600d30e86cb521b https://www.encodeproject.org/files/ENCFF645XJY/@@download/ENCFF645XJY.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF309LWY bigWig signal p-value ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH, ENCFF834MZI 2138246041 ENCODE Processing Pipeline 7c9c8b343e9557feeab61763a79e7fe9 https://www.encodeproject.org/files/ENCFF309LWY/@@download/ENCFF309LWY.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF233FXJ bigWig fold change over control ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF806YIH, ENCFF834MZI 1242169793 ENCODE Processing Pipeline 0b9601a7548659007ce2c7dc17d33dfa https://www.encodeproject.org/files/ENCFF233FXJ/@@download/ENCFF233FXJ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF072KWP bigBed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF589LXR 11540494 ENCODE Processing Pipeline b07f86e4fea33fc92c2dbb9cd442b70f https://www.encodeproject.org/files/ENCFF072KWP/@@download/ENCFF072KWP.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF243ASE bigWig fold change over control ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH, ENCFF834MZI 2252770154 ENCODE Processing Pipeline 90673db1474982ea63107046a088710f https://www.encodeproject.org/files/ENCFF243ASE/@@download/ENCFF243ASE.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF418DRY bed narrowPeak optimal idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF548GLK, ENCFF589LXR, ENCFF848NAZ 207120 ENCODE Processing Pipeline 4e93c7b4d77e37b74325e30f059ada18 https://www.encodeproject.org/files/ENCFF418DRY/@@download/ENCFF418DRY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF542AWC bed narrowPeak conservative idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF548GLK, ENCFF589LXR, ENCFF848NAZ 125371 ENCODE Processing Pipeline 6b29cfa4db7700fa6ec15d80eb159483 https://www.encodeproject.org/files/ENCFF542AWC/@@download/ENCFF542AWC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF952VDR bigBed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF548GLK 11295699 ENCODE Processing Pipeline f2aaec21a8ade80425c30b5741318354 https://www.encodeproject.org/files/ENCFF952VDR/@@download/ENCFF952VDR.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF848NAZ bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH 6290112 ENCODE Processing Pipeline 3b3f4f6bc05b533f8f3bcb305ee2cf47 https://www.encodeproject.org/files/ENCFF848NAZ/@@download/ENCFF848NAZ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF548GLK bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF806YIH, ENCFF834MZI 5506929 ENCODE Processing Pipeline 7dcb3f14f0ad647e847bf544a41001ab https://www.encodeproject.org/files/ENCFF548GLK/@@download/ENCFF548GLK.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF917ZWE bigBed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF848NAZ 11561538 ENCODE Processing Pipeline bf6aa41f7024b1460b837b29f06b5247 https://www.encodeproject.org/files/ENCFF917ZWE/@@download/ENCFF917ZWE.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF485PNR bigBed narrowPeak conservative idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF542AWC 309885 ENCODE Processing Pipeline 90c5fca5504f20a92ca067388f84070a https://www.encodeproject.org/files/ENCFF485PNR/@@download/ENCFF485PNR.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF589LXR bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH, ENCFF834MZI 7013213 ENCODE Processing Pipeline b43ec224b905eab853996fcb0c116ea9 https://www.encodeproject.org/files/ENCFF589LXR/@@download/ENCFF589LXR.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF758VHI bigBed narrowPeak optimal idr thresholded peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF418DRY 435182 ENCODE Processing Pipeline 6d7c03c55b35d9658e1680520ff0ab86 https://www.encodeproject.org/files/ENCFF758VHI/@@download/ENCFF758VHI.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF244MUT bam unfiltered alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 50 ENCFF116EZS, ENCFF133ABX, ENCFF807MUK 1250878584 ENCODE Processing Pipeline 69f8e4a1ed31c0d9809dcae45f290af2 https://www.encodeproject.org/files/ENCFF244MUT/@@download/ENCFF244MUT.bam hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF964IQS bam unfiltered alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 50 ENCFF134EOW, ENCFF479NRX, ENCFF807MUK 1963301245 ENCODE Processing Pipeline 75aafb0a65f1bc244ba7369eeb21c1b9 https://www.encodeproject.org/files/ENCFF964IQS/@@download/ENCFF964IQS.bam hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF133ABX fastq reads ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 1 50 single-ended 580046808 Kevin White, UChicago 39368de65b8f188fa201a5a07f7e2eaa https://www.encodeproject.org/files/ENCFF133ABX/@@download/ENCFF133ABX.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF134EOW fastq reads ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 1 50 single-ended 667205688 Kevin White, UChicago 590d6219e63afa62f482adc269090967 https://www.encodeproject.org/files/ENCFF134EOW/@@download/ENCFF134EOW.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF116EZS fastq reads ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 1 50 single-ended 608488724 Kevin White, UChicago 8f82bcfc41eaf421ca3dbb09e8333fce https://www.encodeproject.org/files/ENCFF116EZS/@@download/ENCFF116EZS.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF479NRX fastq reads ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 1 50 single-ended 1161404882 Kevin White, UChicago 3a9e98fe8652c0989132ee0dbe0357c1 https://www.encodeproject.org/files/ENCFF479NRX/@@download/ENCFF479NRX.fastq.gz Illumina HiSeq 2500 /files/ENCFF563LVJ/, /files/ENCFF877XOV/ released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF947NGO bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF116EZS, ENCFF133ABX, ENCFF807MUK 917391405 ENCODE Processing Pipeline c9cfaf2f18ec1131e693969cd4156cb3 https://www.encodeproject.org/files/ENCFF947NGO/@@download/ENCFF947NGO.bam hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF254TEL bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF134EOW, ENCFF479NRX, ENCFF807MUK 1492832226 ENCODE Processing Pipeline ee1aaf308b4de52247ca09d8787ab56c https://www.encodeproject.org/files/ENCFF254TEL/@@download/ENCFF254TEL.bam hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF537JSG bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 50 ENCFF116EZS, ENCFF133ABX, ENCFF643CGH 916866593 ENCODE Processing Pipeline 0767dfc45886c1dd91842d0d1a4b1e93 https://www.encodeproject.org/files/ENCFF537JSG/@@download/ENCFF537JSG.bam GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF005WQC bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 50 ENCFF134EOW, ENCFF479NRX, ENCFF643CGH 1492126111 ENCODE Processing Pipeline f6dd27428b7eac3074afb4b00902794e https://www.encodeproject.org/files/ENCFF005WQC/@@download/ENCFF005WQC.bam GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF744DDO bam unfiltered alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 50 ENCFF116EZS, ENCFF133ABX, ENCFF643CGH 1254334554 ENCODE Processing Pipeline 1c4f230abd6acb0110599d58ef09d568 https://www.encodeproject.org/files/ENCFF744DDO/@@download/ENCFF744DDO.bam GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF007UFZ bam unfiltered alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 50 ENCFF134EOW, ENCFF479NRX, ENCFF643CGH 1968919848 ENCODE Processing Pipeline d24632758138436e60e59cf562d5b196 https://www.encodeproject.org/files/ENCFF007UFZ/@@download/ENCFF007UFZ.bam GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF264JPR bigWig signal p-value ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF834IGQ, ENCFF947NGO 434538841 ENCODE Processing Pipeline ce7fca3814d06b739c1c746f02e598bf https://www.encodeproject.org/files/ENCFF264JPR/@@download/ENCFF264JPR.bigWig hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF828JND bigWig signal p-value ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF254TEL, ENCFF834IGQ 423576911 ENCODE Processing Pipeline 68310f159b103118c38d80bb5bf2f519 https://www.encodeproject.org/files/ENCFF828JND/@@download/ENCFF828JND.bigWig hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF801APL bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF254TEL, ENCFF834IGQ 6631369 ENCODE Processing Pipeline 62a35ad14213b01f4f8e77964222add6 https://www.encodeproject.org/files/ENCFF801APL/@@download/ENCFF801APL.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF671LDD bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF834IGQ, ENCFF947NGO 6548124 ENCODE Processing Pipeline 6ee22c93011130ba8a66ce84ce98bd8c https://www.encodeproject.org/files/ENCFF671LDD/@@download/ENCFF671LDD.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF301MYO bigWig fold change over control ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF834IGQ, ENCFF947NGO 438479727 ENCODE Processing Pipeline e33e517e97bf2ecb0cb21efa4fdbe08b https://www.encodeproject.org/files/ENCFF301MYO/@@download/ENCFF301MYO.bigWig hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF922NHB bigWig fold change over control ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF254TEL, ENCFF834IGQ, ENCFF947NGO 815385213 ENCODE Processing Pipeline bc505f3317d9be799e17ca33601cf3fe https://www.encodeproject.org/files/ENCFF922NHB/@@download/ENCFF922NHB.bigWig hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF052MPU bigBed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF801APL 12856161 ENCODE Processing Pipeline 5569f4e3d9700947cbeae97e8cb65921 https://www.encodeproject.org/files/ENCFF052MPU/@@download/ENCFF052MPU.bigBed hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF440NYH bigBed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF671LDD 12492432 ENCODE Processing Pipeline d7852c5f918116ba398f69ca275c28d7 https://www.encodeproject.org/files/ENCFF440NYH/@@download/ENCFF440NYH.bigBed hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF708ZJA bigBed narrowPeak optimal idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF388YOB 1147284 ENCODE Processing Pipeline 3e455479f40bc8e2495713dbc787543c https://www.encodeproject.org/files/ENCFF708ZJA/@@download/ENCFF708ZJA.bigBed hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF632AQL bed narrowPeak conservative idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF001TDO, ENCFF671LDD, ENCFF801APL, ENCFF925XFR 407661 ENCODE Processing Pipeline 8c93ffbca33125ddd2b9195ab394ccb8 https://www.encodeproject.org/files/ENCFF632AQL/@@download/ENCFF632AQL.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF219XJE bigBed narrowPeak conservative idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF632AQL 1011613 ENCODE Processing Pipeline 90a4bfd73a2c02407af8e91d1f2b0519 https://www.encodeproject.org/files/ENCFF219XJE/@@download/ENCFF219XJE.bigBed hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF388YOB bed narrowPeak optimal idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF001TDO, ENCFF671LDD, ENCFF801APL, ENCFF925XFR 471909 ENCODE Processing Pipeline fda08e2b7c3812bda36632c9d20dec23 https://www.encodeproject.org/files/ENCFF388YOB/@@download/ENCFF388YOB.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF372UFI bigWig fold change over control ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF254TEL, ENCFF834IGQ 586768648 ENCODE Processing Pipeline fdc54d8cbfdaa48dc648ba950816d0d3 https://www.encodeproject.org/files/ENCFF372UFI/@@download/ENCFF372UFI.bigWig hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF398AJM bigWig signal p-value ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF254TEL, ENCFF834IGQ, ENCFF947NGO 396241719 ENCODE Processing Pipeline 15ed1016a2315833b1c68a170a50ff14 https://www.encodeproject.org/files/ENCFF398AJM/@@download/ENCFF398AJM.bigWig hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF116FCF bigBed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF925XFR 12630626 ENCODE Processing Pipeline 78d7f6aa648d79186f6e6c12aae9ff55 https://www.encodeproject.org/files/ENCFF116FCF/@@download/ENCFF116FCF.bigBed hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF925XFR bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF254TEL, ENCFF834IGQ, ENCFF947NGO 7107484 ENCODE Processing Pipeline 38d43b46a268223a6125a06091da88f8 https://www.encodeproject.org/files/ENCFF925XFR/@@download/ENCFF925XFR.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF171QBI bigWig fold change over control ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF005WQC, ENCFF537JSG, ENCFF791OAY 816038099 ENCODE Processing Pipeline 06b991eb880979557b0389cd4a7bf41c https://www.encodeproject.org/files/ENCFF171QBI/@@download/ENCFF171QBI.bigWig GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF409RVV bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF537JSG, ENCFF791OAY 6550359 ENCODE Processing Pipeline 43f77d708704cee952201b42d9acace8 https://www.encodeproject.org/files/ENCFF409RVV/@@download/ENCFF409RVV.bed.gz GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF912XJB bigWig fold change over control ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF005WQC, ENCFF791OAY 577140108 ENCODE Processing Pipeline 84694325f34cb84814c9bb4a635d88c3 https://www.encodeproject.org/files/ENCFF912XJB/@@download/ENCFF912XJB.bigWig GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF275HDU bed narrowPeak optimal idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF409RVV, ENCFF419RSJ, ENCFF872BRZ, ENCFF935YHM 475119 ENCODE Processing Pipeline bc20f0ea9a6c05b252663ccb0018073a https://www.encodeproject.org/files/ENCFF275HDU/@@download/ENCFF275HDU.bed.gz GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF530EEK bigBed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF872BRZ 12859940 ENCODE Processing Pipeline 615860188869e233398987f40cbeafa7 https://www.encodeproject.org/files/ENCFF530EEK/@@download/ENCFF530EEK.bigBed GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF852HSR bigBed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF935YHM 12654863 ENCODE Processing Pipeline 9e8e19e9a873e4c0730705610a25c07b https://www.encodeproject.org/files/ENCFF852HSR/@@download/ENCFF852HSR.bigBed GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF593FCH bigWig signal p-value ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF005WQC, ENCFF791OAY 421095247 ENCODE Processing Pipeline 5da12173923393205d7f26def23dd06f https://www.encodeproject.org/files/ENCFF593FCH/@@download/ENCFF593FCH.bigWig GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF465BOD bigWig signal p-value ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF537JSG, ENCFF791OAY 434108464 ENCODE Processing Pipeline a85cb1759132a48992396e95db7170ef https://www.encodeproject.org/files/ENCFF465BOD/@@download/ENCFF465BOD.bigWig GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF409AJV bigWig signal p-value ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF005WQC, ENCFF537JSG, ENCFF791OAY 395785624 ENCODE Processing Pipeline 0d3d1ac622af448764dcaa8aa8119622 https://www.encodeproject.org/files/ENCFF409AJV/@@download/ENCFF409AJV.bigWig GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF184SRK bigWig fold change over control ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF537JSG, ENCFF791OAY 439389325 ENCODE Processing Pipeline d64ed727ebee89aece2de8a949ea7c0e https://www.encodeproject.org/files/ENCFF184SRK/@@download/ENCFF184SRK.bigWig GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF872BRZ bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF005WQC, ENCFF791OAY 6629096 ENCODE Processing Pipeline 98f29e5284ce2c6c0b180e46b3014ac3 https://www.encodeproject.org/files/ENCFF872BRZ/@@download/ENCFF872BRZ.bed.gz GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF935YHM bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF005WQC, ENCFF537JSG, ENCFF791OAY 7109965 ENCODE Processing Pipeline 7bd5922fc89d2e4167b4d135df5c2582 https://www.encodeproject.org/files/ENCFF935YHM/@@download/ENCFF935YHM.bed.gz GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF454QMF bigBed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF409RVV 12488881 ENCODE Processing Pipeline 3e06101ec61d88e8e879d7ed0039ef21 https://www.encodeproject.org/files/ENCFF454QMF/@@download/ENCFF454QMF.bigBed GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF959FJF bigBed narrowPeak optimal idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF275HDU 1153873 ENCODE Processing Pipeline 1a85bef59ef7e458ac6dd1dccec70bff https://www.encodeproject.org/files/ENCFF959FJF/@@download/ENCFF959FJF.bigBed GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF734ELX bigBed narrowPeak conservative idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF944YSD 1012058 ENCODE Processing Pipeline 0bc9dfff39b7a7dbc5e43e79bb82007d https://www.encodeproject.org/files/ENCFF734ELX/@@download/ENCFF734ELX.bigBed GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF944YSD bed narrowPeak conservative idr thresholded peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF409RVV, ENCFF419RSJ, ENCFF872BRZ, ENCFF935YHM 408625 ENCODE Processing Pipeline 12d17ee2157f1a55443c817b5ec7f4e8 https://www.encodeproject.org/files/ENCFF944YSD/@@download/ENCFF944YSD.bed.gz GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF862XFE bam unfiltered alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELN, ENCFF002ELO, ENCFF807MUK 7675411246 ENCODE Processing Pipeline bf7632bcd996274edf8c1b1f653d670a https://www.encodeproject.org/files/ENCFF862XFE/@@download/ENCFF862XFE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELG fastq reads ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002ELH 2741018502 Michael Snyder, Stanford aec3dbf805734958fb9228aecab1689f https://www.encodeproject.org/files/ENCFF002ELG/@@download/ENCFF002ELG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELH fastq reads ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002ELG 2798579650 Michael Snyder, Stanford c319207e833354c207ad632cf4bfc5f6 https://www.encodeproject.org/files/ENCFF002ELH/@@download/ENCFF002ELH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELN fastq reads ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002ELO 4022750249 Michael Snyder, Stanford ef028700a8b940e6b4ea73fcff621b69 https://www.encodeproject.org/files/ENCFF002ELN/@@download/ENCFF002ELN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFP/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELO fastq reads ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002ELN 4107977219 Michael Snyder, Stanford cb9fa46c9767586565e8b84688dd1f10 https://www.encodeproject.org/files/ENCFF002ELO/@@download/ENCFF002ELO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFR/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF598OEP bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF002ELN, ENCFF002ELO, ENCFF807MUK 3601484571 ENCODE Processing Pipeline ac31a56958304750a82a8f093cd39c2a https://www.encodeproject.org/files/ENCFF598OEP/@@download/ENCFF598OEP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF201POB fastq reads ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 1 ENCFF722ZLB 2680516426 Michael Snyder, Stanford e01d3ce14586a44fe0f5106c21bff942 https://www.encodeproject.org/files/ENCFF201POB/@@download/ENCFF201POB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF722ZLB fastq reads ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 2 ENCFF201POB 2664126012 Michael Snyder, Stanford 06ecf7f93ab73e1f32c84a851d4f8bd2 https://www.encodeproject.org/files/ENCFF722ZLB/@@download/ENCFF722ZLB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF498WXH bam unfiltered alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELG, ENCFF002ELH, ENCFF201POB, ENCFF643CGH, ENCFF722ZLB 9750211377 ENCODE Processing Pipeline b5c3194833b2479567e117df9c636efa https://www.encodeproject.org/files/ENCFF498WXH/@@download/ENCFF498WXH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF307MXC bam unfiltered alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELG, ENCFF002ELH, ENCFF201POB, ENCFF722ZLB, ENCFF807MUK 9759242896 ENCODE Processing Pipeline 8930c89d6b83e77d8c80fe2e92753661 https://www.encodeproject.org/files/ENCFF307MXC/@@download/ENCFF307MXC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF260PNL bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELN, ENCFF002ELO, ENCFF643CGH 3604425742 ENCODE Processing Pipeline 013a1ca82f94099a619aba30f919dd88 https://www.encodeproject.org/files/ENCFF260PNL/@@download/ENCFF260PNL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF092IFZ bam unfiltered alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELN, ENCFF002ELO, ENCFF643CGH 7670177430 ENCODE Processing Pipeline 84227c0fcddab0f0ebf478277e24b2df https://www.encodeproject.org/files/ENCFF092IFZ/@@download/ENCFF092IFZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456TDF bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELG, ENCFF002ELH, ENCFF201POB, ENCFF722ZLB, ENCFF807MUK 4466481292 ENCODE Processing Pipeline 5a31d4e50ea6b2a7621c16fdb8d50d82 https://www.encodeproject.org/files/ENCFF456TDF/@@download/ENCFF456TDF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF095KVR bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELG, ENCFF002ELH, ENCFF201POB, ENCFF643CGH, ENCFF722ZLB 4469935422 ENCODE Processing Pipeline 885ffcd68b39d27dc6ced267205fb752 https://www.encodeproject.org/files/ENCFF095KVR/@@download/ENCFF095KVR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF448HFK bigWig signal p-value ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF598OEP, ENCFF980CFV 1599550941 ENCODE Processing Pipeline a8291394f72b9f28b91fde72a162f25a https://www.encodeproject.org/files/ENCFF448HFK/@@download/ENCFF448HFK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF677HBZ bigWig fold change over control ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF456TDF, ENCFF980CFV 1654559284 ENCODE Processing Pipeline 463af9fdf90efe00a25538c7a3ef1ae1 https://www.encodeproject.org/files/ENCFF677HBZ/@@download/ENCFF677HBZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF549BNX bigBed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF768FVV 13559390 ENCODE Processing Pipeline 5f2aab4b1170503c42b28e7a9bd8182b https://www.encodeproject.org/files/ENCFF549BNX/@@download/ENCFF549BNX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF958NNA bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF598OEP, ENCFF980CFV 6899333 ENCODE Processing Pipeline 1bfb25fd393078f3edb6175f8b1b89c0 https://www.encodeproject.org/files/ENCFF958NNA/@@download/ENCFF958NNA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF291JHS bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF456TDF, ENCFF598OEP, ENCFF980CFV 7171345 ENCODE Processing Pipeline 307ee65417259cd28b03077f6135b733 https://www.encodeproject.org/files/ENCFF291JHS/@@download/ENCFF291JHS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF182TTF bigWig signal p-value ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF456TDF, ENCFF980CFV 1602825921 ENCODE Processing Pipeline c0ffd2d616a14dcaadb76ac68aa68a2e https://www.encodeproject.org/files/ENCFF182TTF/@@download/ENCFF182TTF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF128RXW bigBed narrowPeak conservative idr thresholded peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF135RCI 1506516 ENCODE Processing Pipeline 7c64b37e4d88f618124238db3b3323d6 https://www.encodeproject.org/files/ENCFF128RXW/@@download/ENCFF128RXW.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF048JWL bed narrowPeak optimal idr thresholded peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF291JHS, ENCFF768FVV, ENCFF958NNA 549464 ENCODE Processing Pipeline b823de521ef5907f68bb2f6df358a678 https://www.encodeproject.org/files/ENCFF048JWL/@@download/ENCFF048JWL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF736BQH bigBed narrowPeak optimal idr thresholded peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048JWL 1263251 ENCODE Processing Pipeline fa483aebce050d4c0ab79d299cabefd0 https://www.encodeproject.org/files/ENCFF736BQH/@@download/ENCFF736BQH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF768FVV bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF456TDF, ENCFF980CFV 6686837 ENCODE Processing Pipeline d1b971ba40165b17e58124ce9b7d7255 https://www.encodeproject.org/files/ENCFF768FVV/@@download/ENCFF768FVV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF135RCI bed narrowPeak conservative idr thresholded peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF291JHS, ENCFF768FVV, ENCFF958NNA 555897 ENCODE Processing Pipeline b060eae031c3114c54dcc8fc8d7f4e45 https://www.encodeproject.org/files/ENCFF135RCI/@@download/ENCFF135RCI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF020FWW bigWig fold change over control ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF456TDF, ENCFF598OEP, ENCFF980CFV 2177265476 ENCODE Processing Pipeline 00c00dfea41f66933841ebe7e2a0e80a https://www.encodeproject.org/files/ENCFF020FWW/@@download/ENCFF020FWW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF569TSV bigBed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF958NNA 13408260 ENCODE Processing Pipeline d3994877a2b7530ded379b896855c967 https://www.encodeproject.org/files/ENCFF569TSV/@@download/ENCFF569TSV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF286CRH bigWig signal p-value ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF456TDF, ENCFF598OEP, ENCFF980CFV 1988338163 ENCODE Processing Pipeline d9b59885435d2684fbaed6bec0248c16 https://www.encodeproject.org/files/ENCFF286CRH/@@download/ENCFF286CRH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF985ECB bigWig fold change over control ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF598OEP, ENCFF980CFV 1507590451 ENCODE Processing Pipeline b0c5a0b77f6a51a1896d04f5953e8b2e https://www.encodeproject.org/files/ENCFF985ECB/@@download/ENCFF985ECB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF470VWX bigBed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291JHS 13172802 ENCODE Processing Pipeline 81a961fd9fb819edda26d8da0d87e7f4 https://www.encodeproject.org/files/ENCFF470VWX/@@download/ENCFF470VWX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF831MUG bigWig signal p-value ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF095KVR, ENCFF396QTX 1813850271 ENCODE Processing Pipeline 7a992a6683e4389e2adc27936c25e6da https://www.encodeproject.org/files/ENCFF831MUG/@@download/ENCFF831MUG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF309RMM bigWig fold change over control ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF095KVR, ENCFF396QTX 1651475454 ENCODE Processing Pipeline 7e777fc720606c22cc23aea434e54d1d https://www.encodeproject.org/files/ENCFF309RMM/@@download/ENCFF309RMM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF966CBH bigWig signal p-value ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF260PNL, ENCFF396QTX 1460888863 ENCODE Processing Pipeline 13514b5efa44a2a845d56a558be3e4c0 https://www.encodeproject.org/files/ENCFF966CBH/@@download/ENCFF966CBH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF420XCY bigWig signal p-value ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF095KVR, ENCFF260PNL, ENCFF396QTX 2103457336 ENCODE Processing Pipeline 8a2eae410d1dd55d2fead8b8909ab254 https://www.encodeproject.org/files/ENCFF420XCY/@@download/ENCFF420XCY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF440PPA bigWig fold change over control ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF260PNL, ENCFF396QTX 1521694848 ENCODE Processing Pipeline f379c5b058e11523842b73552caced19 https://www.encodeproject.org/files/ENCFF440PPA/@@download/ENCFF440PPA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF141DDF bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF095KVR, ENCFF396QTX 6685445 ENCODE Processing Pipeline 97489ed025e8833874f2c5eea358de69 https://www.encodeproject.org/files/ENCFF141DDF/@@download/ENCFF141DDF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF935BOG bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF095KVR, ENCFF260PNL, ENCFF396QTX 7162694 ENCODE Processing Pipeline 56088938e4c9a9815ca873170c7eac6c https://www.encodeproject.org/files/ENCFF935BOG/@@download/ENCFF935BOG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF327UGN bigBed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF582HSP 13353621 ENCODE Processing Pipeline fd9e379610362e7c1e59328efe7d783a https://www.encodeproject.org/files/ENCFF327UGN/@@download/ENCFF327UGN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF895YAN bigBed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF935BOG 13176250 ENCODE Processing Pipeline 41eb7924e27e4a3ca6ca6803f107134d https://www.encodeproject.org/files/ENCFF895YAN/@@download/ENCFF895YAN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF768RIF bigBed narrowPeak optimal idr thresholded peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF255WJM 1504666 ENCODE Processing Pipeline 5caebab785b30b0503b8849b3856db23 https://www.encodeproject.org/files/ENCFF768RIF/@@download/ENCFF768RIF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF489TBQ bigWig fold change over control ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF095KVR, ENCFF260PNL, ENCFF396QTX 2173832396 ENCODE Processing Pipeline 9499dc7b9e02c83589494f45c598dd74 https://www.encodeproject.org/files/ENCFF489TBQ/@@download/ENCFF489TBQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF582HSP bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF260PNL, ENCFF396QTX 6867359 ENCODE Processing Pipeline 84997c8678aa77bd007f65ef2edc4259 https://www.encodeproject.org/files/ENCFF582HSP/@@download/ENCFF582HSP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF488ITC bigBed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF141DDF 13567918 ENCODE Processing Pipeline 40e51a9bb7369d1cfd9186a9c005370c https://www.encodeproject.org/files/ENCFF488ITC/@@download/ENCFF488ITC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF255WJM bed narrowPeak optimal idr thresholded peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF141DDF, ENCFF419RSJ, ENCFF582HSP, ENCFF935BOG 553011 ENCODE Processing Pipeline bfcc4b225b494de8249082e715ef7ea9 https://www.encodeproject.org/files/ENCFF255WJM/@@download/ENCFF255WJM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF227YVA bam unfiltered alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF293YFE, ENCFF330MCZ, ENCFF807MUK 5519492024 ENCODE Processing Pipeline e849cdfd6914826a1e610497cd8fc6c8 https://www.encodeproject.org/files/ENCFF227YVA/@@download/ENCFF227YVA.bam hg19 released ENCFF969EAM bam unfiltered alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF582IOZ, ENCFF807MUK, ENCFF957SQS 5009085519 ENCODE Processing Pipeline aac37ff57211cd2367a04fe3f7f509c9 https://www.encodeproject.org/files/ENCFF969EAM/@@download/ENCFF969EAM.bam hg19 released ENCFF582IOZ fastq reads ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF957SQS 2294743409 Michael Snyder, Stanford 9558598bd4f504c8784a9e4319754e25 SRA:SRR5112003 https://www.encodeproject.org/files/ENCFF582IOZ/@@download/ENCFF582IOZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF330MCZ fastq reads ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF293YFE 2474185872 Michael Snyder, Stanford ad5c8484b1f48c448b874890afbb3f3c SRA:SRR5112002 https://www.encodeproject.org/files/ENCFF330MCZ/@@download/ENCFF330MCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF293YFE fastq reads ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF330MCZ 2540994403 Michael Snyder, Stanford afd90986a290512517e4153f3e4db67a SRA:SRR5112002 https://www.encodeproject.org/files/ENCFF293YFE/@@download/ENCFF293YFE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF957SQS fastq reads ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF582IOZ 2265833572 Michael Snyder, Stanford 33f7c77990d045a4ac4dada490346c34 SRA:SRR5112003 https://www.encodeproject.org/files/ENCFF957SQS/@@download/ENCFF957SQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF969ZBO bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF293YFE, ENCFF330MCZ, ENCFF807MUK 4557108270 ENCODE Processing Pipeline 84ff0e945dcae564719cfc3d44cb4eb7 https://www.encodeproject.org/files/ENCFF969ZBO/@@download/ENCFF969ZBO.bam hg19 released ENCFF007UHY bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF582IOZ, ENCFF807MUK, ENCFF957SQS 4202028100 ENCODE Processing Pipeline c9c5b7e03504fd26881273e6abb8f808 https://www.encodeproject.org/files/ENCFF007UHY/@@download/ENCFF007UHY.bam hg19 released ENCFF764MBT bigWig signal p-value ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF007UHY, ENCFF583FAG 1157039354 ENCODE Processing Pipeline 32c28a3c216192fca97ed0c2ba27c736 https://www.encodeproject.org/files/ENCFF764MBT/@@download/ENCFF764MBT.bigWig hg19 released ENCFF544VRA bigWig signal p-value ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF969ZBO 1063703851 ENCODE Processing Pipeline 7ece4c69cc9b94fa0bae6e320624c2d3 https://www.encodeproject.org/files/ENCFF544VRA/@@download/ENCFF544VRA.bigWig hg19 released ENCFF833MFJ bigWig signal p-value ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF007UHY, ENCFF049MPQ, ENCFF583FAG, ENCFF969ZBO 1502819235 ENCODE Processing Pipeline 57964e778aa0d1da1158701a25442ced https://www.encodeproject.org/files/ENCFF833MFJ/@@download/ENCFF833MFJ.bigWig hg19 released ENCFF578WOS bigWig fold change over control ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF007UHY, ENCFF583FAG 1090271077 ENCODE Processing Pipeline 0e9b3356708f30f260a3bc89fb9513d7 https://www.encodeproject.org/files/ENCFF578WOS/@@download/ENCFF578WOS.bigWig hg19 released ENCFF252CGO bigWig fold change over control ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF969ZBO 1119605400 ENCODE Processing Pipeline 012fa93426dd9ae9a9afa62396149726 https://www.encodeproject.org/files/ENCFF252CGO/@@download/ENCFF252CGO.bigWig hg19 released ENCFF475AXY bigWig fold change over control ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF007UHY, ENCFF049MPQ, ENCFF583FAG, ENCFF969ZBO 2017087289 ENCODE Processing Pipeline 9143ffe56249de219f0181eae111e08b https://www.encodeproject.org/files/ENCFF475AXY/@@download/ENCFF475AXY.bigWig hg19 released ENCFF096VAL bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF007UHY, ENCFF583FAG 6055216 ENCODE Processing Pipeline d10dce3423158564b44ccee7081d5b39 https://www.encodeproject.org/files/ENCFF096VAL/@@download/ENCFF096VAL.bed.gz hg19 released ENCFF852HEY bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF969ZBO 6149229 ENCODE Processing Pipeline a4c8f4d0da2876d7510bfc5873fd3e84 https://www.encodeproject.org/files/ENCFF852HEY/@@download/ENCFF852HEY.bed.gz hg19 released ENCFF546ASI bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF007UHY, ENCFF049MPQ, ENCFF583FAG, ENCFF969ZBO 7079273 ENCODE Processing Pipeline 8428de6eb6db499f7c8d82a933122f66 https://www.encodeproject.org/files/ENCFF546ASI/@@download/ENCFF546ASI.bed.gz hg19 released ENCFF595RYO bigBed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF096VAL 11140921 ENCODE Processing Pipeline b3e1326c6c2a5c8d2a1d4eba939a9e55 https://www.encodeproject.org/files/ENCFF595RYO/@@download/ENCFF595RYO.bigBed hg19 released ENCFF747HNM bigBed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF852HEY 11122894 ENCODE Processing Pipeline 651af07e2ac2a5e58c58575891422043 https://www.encodeproject.org/files/ENCFF747HNM/@@download/ENCFF747HNM.bigBed hg19 released ENCFF917FYS bigBed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF546ASI 11089164 ENCODE Processing Pipeline 6fc7f87d57b3e543452d7a9f336b12de https://www.encodeproject.org/files/ENCFF917FYS/@@download/ENCFF917FYS.bigBed hg19 released ENCFF848WYC bed narrowPeak conservative idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF096VAL, ENCFF546ASI, ENCFF852HEY 28015 ENCODE Processing Pipeline 42ad073269464b1311fbe0bba75a1326 https://www.encodeproject.org/files/ENCFF848WYC/@@download/ENCFF848WYC.bed.gz hg19 released ENCFF068TLE bigBed narrowPeak conservative idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF848WYC 111806 ENCODE Processing Pipeline e9a77333ef203a447ed0acab09365a94 https://www.encodeproject.org/files/ENCFF068TLE/@@download/ENCFF068TLE.bigBed hg19 released ENCFF193MKL bed narrowPeak optimal idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF096VAL, ENCFF546ASI, ENCFF852HEY 54123 ENCODE Processing Pipeline cd90f0a39db101f4a65917b0ac20bf94 https://www.encodeproject.org/files/ENCFF193MKL/@@download/ENCFF193MKL.bed.gz hg19 released ENCFF829RKA bigBed narrowPeak optimal idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF193MKL 154671 ENCODE Processing Pipeline a7400e889be3c4b247853085fed84c07 https://www.encodeproject.org/files/ENCFF829RKA/@@download/ENCFF829RKA.bigBed hg19 released ENCFF702CUS bam unfiltered alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF293YFE, ENCFF330MCZ, ENCFF643CGH 5529398808 ENCODE Processing Pipeline 67e4cf09214e3af2a0741327bcdd3da8 https://www.encodeproject.org/files/ENCFF702CUS/@@download/ENCFF702CUS.bam GRCh38 released ENCFF069JDL bam unfiltered alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF582IOZ, ENCFF643CGH, ENCFF957SQS 5017830639 ENCODE Processing Pipeline 062229ac9fbfea6979731245aeaa7e06 https://www.encodeproject.org/files/ENCFF069JDL/@@download/ENCFF069JDL.bam GRCh38 released ENCFF063JBE bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF293YFE, ENCFF330MCZ, ENCFF643CGH 4561353866 ENCODE Processing Pipeline 93bc9bcba78bfc8b84c50f73786680c1 https://www.encodeproject.org/files/ENCFF063JBE/@@download/ENCFF063JBE.bam GRCh38 released ENCFF924HNJ bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF582IOZ, ENCFF643CGH, ENCFF957SQS 4206456919 ENCODE Processing Pipeline 38562b22c5b4cf474707cda9bdc25125 https://www.encodeproject.org/files/ENCFF924HNJ/@@download/ENCFF924HNJ.bam GRCh38 released ENCFF972WEP bigWig signal p-value ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF426RDP, ENCFF924HNJ 889556169 ENCODE Processing Pipeline 4fd1ab29dd49a82559bd8aff333ba5e6 https://www.encodeproject.org/files/ENCFF972WEP/@@download/ENCFF972WEP.bigWig GRCh38 released ENCFF372HZF bigWig signal p-value ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF063JBE, ENCFF291AFY 1080008338 ENCODE Processing Pipeline 5be91a18fab59fc0d239dbb0149bc0ab https://www.encodeproject.org/files/ENCFF372HZF/@@download/ENCFF372HZF.bigWig GRCh38 released ENCFF808WHA bigWig signal p-value ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF063JBE, ENCFF291AFY, ENCFF426RDP, ENCFF924HNJ 1845528096 ENCODE Processing Pipeline 96c1f15d6e2e0cf1580e34bef7119d5d https://www.encodeproject.org/files/ENCFF808WHA/@@download/ENCFF808WHA.bigWig GRCh38 released ENCFF914AMC bigWig fold change over control ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF426RDP, ENCFF924HNJ 1103754393 ENCODE Processing Pipeline aa774ebf22541bcd0af14ea6152b2c3b https://www.encodeproject.org/files/ENCFF914AMC/@@download/ENCFF914AMC.bigWig GRCh38 released ENCFF733ULS bigWig fold change over control ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF063JBE, ENCFF291AFY 1118230859 ENCODE Processing Pipeline 5f607d7c7d915b1fb832bcfb81a3badb https://www.encodeproject.org/files/ENCFF733ULS/@@download/ENCFF733ULS.bigWig GRCh38 released ENCFF072FPF bigWig fold change over control ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF063JBE, ENCFF291AFY, ENCFF426RDP, ENCFF924HNJ 2049450686 ENCODE Processing Pipeline 405b283cfbd4d7e25e713ca20d50cf0e https://www.encodeproject.org/files/ENCFF072FPF/@@download/ENCFF072FPF.bigWig GRCh38 released ENCFF694KUN bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF426RDP, ENCFF924HNJ 5888941 ENCODE Processing Pipeline e2805c5ea4a876399d6eadfe1992573d https://www.encodeproject.org/files/ENCFF694KUN/@@download/ENCFF694KUN.bed.gz GRCh38 released ENCFF003QBR bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF063JBE, ENCFF291AFY 5972093 ENCODE Processing Pipeline e48f90558abd706e8e21c319e1720525 https://www.encodeproject.org/files/ENCFF003QBR/@@download/ENCFF003QBR.bed.gz GRCh38 released ENCFF048LHN bigBed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF694KUN 11134999 ENCODE Processing Pipeline d3fb539d81a0c02bfe0f5b7e56c7d88b https://www.encodeproject.org/files/ENCFF048LHN/@@download/ENCFF048LHN.bigBed GRCh38 released ENCFF141BNU bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF063JBE, ENCFF291AFY, ENCFF426RDP, ENCFF924HNJ 7022442 ENCODE Processing Pipeline 1675fe7a36da238e3fc08f3263f76aa0 https://www.encodeproject.org/files/ENCFF141BNU/@@download/ENCFF141BNU.bed.gz GRCh38 released ENCFF244BWI bigBed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF003QBR 11129087 ENCODE Processing Pipeline 18dfc66c57c691149044f12438c11ce8 https://www.encodeproject.org/files/ENCFF244BWI/@@download/ENCFF244BWI.bigBed GRCh38 released ENCFF158DBH bigBed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF141BNU 11104308 ENCODE Processing Pipeline eee7bd528daf8f750ee94442b8df7bf5 https://www.encodeproject.org/files/ENCFF158DBH/@@download/ENCFF158DBH.bigBed GRCh38 released ENCFF719FJX bed narrowPeak conservative idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF003QBR, ENCFF141BNU, ENCFF419RSJ, ENCFF694KUN 30160 ENCODE Processing Pipeline 9d48682c4df1e7a98e72b3ebccee07a5 https://www.encodeproject.org/files/ENCFF719FJX/@@download/ENCFF719FJX.bed.gz GRCh38 released ENCFF040NYA bigBed narrowPeak conservative idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF719FJX 117277 ENCODE Processing Pipeline af3fcfab712c583f0bb14bdba0b935b4 https://www.encodeproject.org/files/ENCFF040NYA/@@download/ENCFF040NYA.bigBed GRCh38 released ENCFF577EMC bed narrowPeak optimal idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF003QBR, ENCFF141BNU, ENCFF419RSJ, ENCFF694KUN 56861 ENCODE Processing Pipeline ec6de2c8cbab3d81f9b5ee6b2e4a539e https://www.encodeproject.org/files/ENCFF577EMC/@@download/ENCFF577EMC.bed.gz GRCh38 released ENCFF265MXE bigBed narrowPeak optimal idr thresholded peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF577EMC 161266 ENCODE Processing Pipeline 91d6de86c39fcbc8ae5f8ed60c35f112 https://www.encodeproject.org/files/ENCFF265MXE/@@download/ENCFF265MXE.bigBed GRCh38 released ENCFF304NDL fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 1 ENCFF340BKZ 3564248745 Michael Snyder, Stanford 28e8df7f1f317070a45465da2b486826 SRA:SRR5111639 https://www.encodeproject.org/files/ENCFF304NDL/@@download/ENCFF304NDL.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF340BKZ fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 1 100 paired-ended 2 ENCFF304NDL 3746946044 Michael Snyder, Stanford c95eb750b72e88def16ba6a52ad2e0e2 SRA:SRR5111639 https://www.encodeproject.org/files/ENCFF340BKZ/@@download/ENCFF340BKZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF422BBZ fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 1 ENCFF580NZZ 2732596467 Michael Snyder, Stanford cb1bd9b49b47a50aa1246629f87d6522 SRA:SRR5111640 https://www.encodeproject.org/files/ENCFF422BBZ/@@download/ENCFF422BBZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF580NZZ fastq reads ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 1 100 paired-ended 2 ENCFF422BBZ 2877124263 Michael Snyder, Stanford 34420731f45b0adbbc5776461f1f7497 SRA:SRR5111640 https://www.encodeproject.org/files/ENCFF580NZZ/@@download/ENCFF580NZZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF512BNR bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF807MUK 5433850483 ENCODE Processing Pipeline 15ee84115fa6eac641e0527a489a2811 https://www.encodeproject.org/files/ENCFF512BNR/@@download/ENCFF512BNR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF963OQY bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF807MUK 6688972818 ENCODE Processing Pipeline 7741430399c5ae53d0f8a618ea441f35 https://www.encodeproject.org/files/ENCFF963OQY/@@download/ENCFF963OQY.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF815FYD bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF807MUK 4101068676 ENCODE Processing Pipeline d6e45c0abeae8112ecd06c314cc502e2 https://www.encodeproject.org/files/ENCFF815FYD/@@download/ENCFF815FYD.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF481IFQ bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF807MUK 4586915517 ENCODE Processing Pipeline ddc63373fe0197c5615cfcfa20221ee7 https://www.encodeproject.org/files/ENCFF481IFQ/@@download/ENCFF481IFQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF661JYJ bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF643CGH 5439539044 ENCODE Processing Pipeline 494ab8b1402d9be06e7ee1b269b8856f https://www.encodeproject.org/files/ENCFF661JYJ/@@download/ENCFF661JYJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF782ZPU bam unfiltered alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF643CGH 6692065626 ENCODE Processing Pipeline 061749757fd51cdb78163b8d8666437d https://www.encodeproject.org/files/ENCFF782ZPU/@@download/ENCFF782ZPU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF023IKP bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF643CGH 4106654466 ENCODE Processing Pipeline f9ebbbcabc2701ffb33ad4fe945927c4 https://www.encodeproject.org/files/ENCFF023IKP/@@download/ENCFF023IKP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF653RTQ bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF643CGH 4592822778 ENCODE Processing Pipeline cf534a9065e4a802973599976131fe47 https://www.encodeproject.org/files/ENCFF653RTQ/@@download/ENCFF653RTQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF046QXW bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF023IKP, ENCFF666ATR 1336138473 ENCODE Processing Pipeline 4736a80f744c096e6adf303503da5d38 https://www.encodeproject.org/files/ENCFF046QXW/@@download/ENCFF046QXW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF514HMG bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 1896287144 ENCODE Processing Pipeline 3a01b92230444d06eed031cbd39443a8 https://www.encodeproject.org/files/ENCFF514HMG/@@download/ENCFF514HMG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF673CUS bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF023IKP, ENCFF666ATR 1250876538 ENCODE Processing Pipeline c4cf781c425fddbc0909da2c40c53472 https://www.encodeproject.org/files/ENCFF673CUS/@@download/ENCFF673CUS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF952BKH bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 1821743431 ENCODE Processing Pipeline 8a1370be126ecbc652663b9bedaf908a https://www.encodeproject.org/files/ENCFF952BKH/@@download/ENCFF952BKH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF721LCX bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF023IKP, ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 2009785840 ENCODE Processing Pipeline 0382b6ab60fbd6b305d3a70bd47c99c7 https://www.encodeproject.org/files/ENCFF721LCX/@@download/ENCFF721LCX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF750RLG bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF023IKP, ENCFF666ATR 6571545 ENCODE Processing Pipeline bea068a63020c13ee0950c030cb5635b https://www.encodeproject.org/files/ENCFF750RLG/@@download/ENCFF750RLG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF294JNU bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF023IKP, ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 2407820621 ENCODE Processing Pipeline a21d484a26ecda267700d718f47c43be https://www.encodeproject.org/files/ENCFF294JNU/@@download/ENCFF294JNU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF745VJD bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 7096973 ENCODE Processing Pipeline 1de25e381d9cb311ae2a79eba3509b86 https://www.encodeproject.org/files/ENCFF745VJD/@@download/ENCFF745VJD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF460IKB bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF750RLG 11262681 ENCODE Processing Pipeline d2954a911e66a429fb15e4935fd45c2c https://www.encodeproject.org/files/ENCFF460IKB/@@download/ENCFF460IKB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF672LDK bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF023IKP, ENCFF322NTO, ENCFF653RTQ, ENCFF666ATR 7257732 ENCODE Processing Pipeline ae43a8e2ee26003357f9c8d6432076da https://www.encodeproject.org/files/ENCFF672LDK/@@download/ENCFF672LDK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF688WHP bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF745VJD 13370668 ENCODE Processing Pipeline 7da05df2e0e41fada6b883827c4f89a6 https://www.encodeproject.org/files/ENCFF688WHP/@@download/ENCFF688WHP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF065ZEM bigBed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF592LPO 612463 ENCODE Processing Pipeline 5964e5f494425f8bcb14ce69a82f7c72 https://www.encodeproject.org/files/ENCFF065ZEM/@@download/ENCFF065ZEM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF592LPO bed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF672LDK, ENCFF745VJD, ENCFF750RLG 261426 ENCODE Processing Pipeline d0430fdc40b6e6ea019f6c117e53ee12 https://www.encodeproject.org/files/ENCFF592LPO/@@download/ENCFF592LPO.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF833UEG bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF672LDK 13329688 ENCODE Processing Pipeline 22a6e5e11dbdbfe1b1fdfebb273aabd3 https://www.encodeproject.org/files/ENCFF833UEG/@@download/ENCFF833UEG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF446BHY bed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF672LDK, ENCFF745VJD, ENCFF750RLG 189874 ENCODE Processing Pipeline 6de752387a4a3e437359cda79bd6b542 https://www.encodeproject.org/files/ENCFF446BHY/@@download/ENCFF446BHY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF740HYF bigBed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF446BHY 402423 ENCODE Processing Pipeline d8db29a556ad65ef632e6be5bc9d896d https://www.encodeproject.org/files/ENCFF740HYF/@@download/ENCFF740HYF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF317WYD bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF159QMJ 11250396 ENCODE Processing Pipeline 2f79ea780b3f9f8bb7f47be28cd14259 https://www.encodeproject.org/files/ENCFF317WYD/@@download/ENCFF317WYD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF792OHO bigBed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF626WXN 403991 ENCODE Processing Pipeline 69e5416f8544dfc1d5dbede0f4e5db10 https://www.encodeproject.org/files/ENCFF792OHO/@@download/ENCFF792OHO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF809PXE bed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF089KCX, ENCFF159QMJ, ENCFF827JSS 261069 ENCODE Processing Pipeline 571eea3e172f1eee41776e6ff5fbad01 https://www.encodeproject.org/files/ENCFF809PXE/@@download/ENCFF809PXE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF008YBN bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF481IFQ, ENCFF592WAL, ENCFF815FYD, ENCFF901CND 2312547682 ENCODE Processing Pipeline 5b6e488b44124a5ada5a53fa79915b17 https://www.encodeproject.org/files/ENCFF008YBN/@@download/ENCFF008YBN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF159QMJ bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 6568482 ENCODE Processing Pipeline 6778d83ba7f736f01fff4506f941afd1 https://www.encodeproject.org/files/ENCFF159QMJ/@@download/ENCFF159QMJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF639WZS bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 1214620775 ENCODE Processing Pipeline f5c8e4840ce94410c3415e234effcc11 https://www.encodeproject.org/files/ENCFF639WZS/@@download/ENCFF639WZS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF085IIW bigWig signal p-value ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 1700451950 ENCODE Processing Pipeline c1e6e0f674e9ab0f450162be20eda04b https://www.encodeproject.org/files/ENCFF085IIW/@@download/ENCFF085IIW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF956CKZ bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 1845869303 ENCODE Processing Pipeline 7266944716f9bf0b5147e424afcbe375 https://www.encodeproject.org/files/ENCFF956CKZ/@@download/ENCFF956CKZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF827JSS bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 7108656 ENCODE Processing Pipeline 0b0252f04721227207518ddd1fbdc92a https://www.encodeproject.org/files/ENCFF827JSS/@@download/ENCFF827JSS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF144VLA bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF089KCX 13322887 ENCODE Processing Pipeline a649ac1303bcb414b5c5d58b49b462c7 https://www.encodeproject.org/files/ENCFF144VLA/@@download/ENCFF144VLA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF626WXN bed narrowPeak conservative idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF089KCX, ENCFF159QMJ, ENCFF827JSS 191063 ENCODE Processing Pipeline 1ec7ef06113c481e7e9e8992ed4ad8e6 https://www.encodeproject.org/files/ENCFF626WXN/@@download/ENCFF626WXN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF882WHJ bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 1325806290 ENCODE Processing Pipeline dcf0622134f484b01e0856558a261932 https://www.encodeproject.org/files/ENCFF882WHJ/@@download/ENCFF882WHJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF407PLR bigWig fold change over control ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF481IFQ, ENCFF592WAL, ENCFF815FYD, ENCFF901CND 2404249113 ENCODE Processing Pipeline 265cee00ec03846d17c28d068847fdf4 https://www.encodeproject.org/files/ENCFF407PLR/@@download/ENCFF407PLR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF089KCX bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF481IFQ, ENCFF592WAL, ENCFF815FYD, ENCFF901CND 7251615 ENCODE Processing Pipeline e6b5f7cfb5867356270963c874bb0ec6 https://www.encodeproject.org/files/ENCFF089KCX/@@download/ENCFF089KCX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF311HTV bigBed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF827JSS 13377398 ENCODE Processing Pipeline 8f44118f4a655f350fc544d4dfb5b01d https://www.encodeproject.org/files/ENCFF311HTV/@@download/ENCFF311HTV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF682CZS bigBed narrowPeak optimal idr thresholded peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1, 2 ENCFF809PXE 611344 ENCODE Processing Pipeline db5e22d90b3f8c3e99106d2719f6e162 https://www.encodeproject.org/files/ENCFF682CZS/@@download/ENCFF682CZS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF091MNA bam unfiltered alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF807MUK 1185021855 ENCODE Processing Pipeline 406d0e0bc6cfd495fbca39b91d29aefe https://www.encodeproject.org/files/ENCFF091MNA/@@download/ENCFF091MNA.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF678QLX bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF807MUK 885498825 ENCODE Processing Pipeline 738a1025c977aebd8fc23437bb166140 https://www.encodeproject.org/files/ENCFF678QLX/@@download/ENCFF678QLX.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF136YSL bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF751TBY, ENCFF807MUK 1245539165 ENCODE Processing Pipeline a366d07c65ad2e863cf5493c7d691d9a https://www.encodeproject.org/files/ENCFF136YSL/@@download/ENCFF136YSL.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF665LIV bam unfiltered alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF751TBY, ENCFF807MUK 1668142380 ENCODE Processing Pipeline 844473898e22295133a6fa15d99a74cd https://www.encodeproject.org/files/ENCFF665LIV/@@download/ENCFF665LIV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF885JXI bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF136YSL, ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 1211795646 ENCODE Processing Pipeline 20d0edce4949351589a2fec0e272acc3 https://www.encodeproject.org/files/ENCFF885JXI/@@download/ENCFF885JXI.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF138CBJ bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF136YSL, ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 1289556483 ENCODE Processing Pipeline a059964039b84726998681bd5dc261fb https://www.encodeproject.org/files/ENCFF138CBJ/@@download/ENCFF138CBJ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF426TDF bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 5381827 ENCODE Processing Pipeline daf1fd78cb74d49c5226bafe1b0e4abe https://www.encodeproject.org/files/ENCFF426TDF/@@download/ENCFF426TDF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF719LYG bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF136YSL, ENCFF654EHF, ENCFF991UTU 6334036 ENCODE Processing Pipeline 5b9211da3befebf088139f31ac6a136a https://www.encodeproject.org/files/ENCFF719LYG/@@download/ENCFF719LYG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF873YWK bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF136YSL, ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 6753255 ENCODE Processing Pipeline 5e8180210d79444984db4a9a5f04e74f https://www.encodeproject.org/files/ENCFF873YWK/@@download/ENCFF873YWK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF918JND bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF426TDF 13506609 ENCODE Processing Pipeline 1031cc6ebd128291cd2f7c934de16e79 https://www.encodeproject.org/files/ENCFF918JND/@@download/ENCFF918JND.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF276OLB bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF719LYG 13533902 ENCODE Processing Pipeline 30e31a22bf0a7f825e0bfd78082defcc https://www.encodeproject.org/files/ENCFF276OLB/@@download/ENCFF276OLB.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF602IJY bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF873YWK 13552364 ENCODE Processing Pipeline 9dd2728285503b2afc6f5d036311563f https://www.encodeproject.org/files/ENCFF602IJY/@@download/ENCFF602IJY.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF749NSI bed narrowPeak conservative idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF001TDO, ENCFF426TDF, ENCFF719LYG, ENCFF873YWK 78148 ENCODE Processing Pipeline 2946de85d8873a94a222f687be2198fe https://www.encodeproject.org/files/ENCFF749NSI/@@download/ENCFF749NSI.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF598WRF bigBed narrowPeak conservative idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF749NSI 212886 ENCODE Processing Pipeline 789f06d4833243d738c3a92cf1a91132 https://www.encodeproject.org/files/ENCFF598WRF/@@download/ENCFF598WRF.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF189TVG bed narrowPeak optimal idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF001TDO, ENCFF426TDF, ENCFF719LYG, ENCFF873YWK 90623 ENCODE Processing Pipeline 9dea3ec7f9807e5c95f5d056631de6be https://www.encodeproject.org/files/ENCFF189TVG/@@download/ENCFF189TVG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF471URR bigBed narrowPeak optimal idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF189TVG 233484 ENCODE Processing Pipeline f7b74b6e758b2b1d69b8b786be892fbd https://www.encodeproject.org/files/ENCFF471URR/@@download/ENCFF471URR.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF751TBY fastq reads ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 1 50 single-ended 1492374312 Richard Myers, HAIB c0243345bd6581503e4abe3b4e35b7bd SRA:SRR5338618 https://www.encodeproject.org/files/ENCFF751TBY/@@download/ENCFF751TBY.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF245KJA fastq reads ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 1 50 single-ended 1047637071 Richard Myers, HAIB 652f9b249f102ef29573414a5be8156a SRA:SRR5338617 https://www.encodeproject.org/files/ENCFF245KJA/@@download/ENCFF245KJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF489HCA bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF751TBY, ENCFF807MUK 1245539137 ENCODE Processing Pipeline 18ab31092296c2b2ec8ba884b7116d14 https://www.encodeproject.org/files/ENCFF489HCA/@@download/ENCFF489HCA.bam hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF442DMR bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF807MUK 885498797 ENCODE Processing Pipeline c614d1bda4c1c4af7eb8c0dcd9f83e76 https://www.encodeproject.org/files/ENCFF442DMR/@@download/ENCFF442DMR.bam hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF275BYJ bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF136YSL, ENCFF654EHF, ENCFF991UTU 988094965 ENCODE Processing Pipeline 99c5f2495cc089d2a376506ada077a22 https://www.encodeproject.org/files/ENCFF275BYJ/@@download/ENCFF275BYJ.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF251LMC bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 977561431 ENCODE Processing Pipeline 6fe4ea0071c3c59ceb038cdd6ffe1f5f https://www.encodeproject.org/files/ENCFF251LMC/@@download/ENCFF251LMC.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF820AKL bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF442DMR, ENCFF489HCA, ENCFF654EHF, ENCFF991UTU 1193819032 ENCODE Processing Pipeline b018e6ab8fb6b2eb0e256cf3506ec629 https://www.encodeproject.org/files/ENCFF820AKL/@@download/ENCFF820AKL.bigWig hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF237FUW bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 689103254 ENCODE Processing Pipeline 8c812c7ecbaec3aa3efceeeb12984009 https://www.encodeproject.org/files/ENCFF237FUW/@@download/ENCFF237FUW.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF233DEM bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF136YSL, ENCFF654EHF, ENCFF991UTU 985007420 ENCODE Processing Pipeline 2395bd88dc8683e13605fa79a76d0a07 https://www.encodeproject.org/files/ENCFF233DEM/@@download/ENCFF233DEM.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF567WBH bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF774TWW 13544601 ENCODE Processing Pipeline 0b0c3fd15ab89177048d2c682a9b3cb6 https://www.encodeproject.org/files/ENCFF567WBH/@@download/ENCFF567WBH.bigBed hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF753GAP bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF442DMR, ENCFF489HCA, ENCFF654EHF, ENCFF991UTU 1259120904 ENCODE Processing Pipeline 8f1d5820927cd7b20e6ab7b2319fca6b https://www.encodeproject.org/files/ENCFF753GAP/@@download/ENCFF753GAP.bigWig hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF774TWW bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF442DMR, ENCFF654EHF, ENCFF991UTU 5616210 ENCODE Processing Pipeline 3a18fc63bbba4a86b9d10a4bcf1c6310 https://www.encodeproject.org/files/ENCFF774TWW/@@download/ENCFF774TWW.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF862YTD bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF489HCA, ENCFF654EHF, ENCFF991UTU 6509263 ENCODE Processing Pipeline d487a642ab6faabf4426c5f42cb492b3 https://www.encodeproject.org/files/ENCFF862YTD/@@download/ENCFF862YTD.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF868FGE bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF442DMR, ENCFF489HCA, ENCFF654EHF, ENCFF991UTU 6905316 ENCODE Processing Pipeline 5d6751c91745913086796c79460319c8 https://www.encodeproject.org/files/ENCFF868FGE/@@download/ENCFF868FGE.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF143WEV bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF862YTD 13540069 ENCODE Processing Pipeline c851f4957a93898ba8aeff1a1c874d74 https://www.encodeproject.org/files/ENCFF143WEV/@@download/ENCFF143WEV.bigBed hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF529CKV bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF868FGE 13555806 ENCODE Processing Pipeline 7f453e18ac9113b1aae1103a8013fc4c https://www.encodeproject.org/files/ENCFF529CKV/@@download/ENCFF529CKV.bigBed hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF290DDY bam unfiltered alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF643CGH 1190305865 ENCODE Processing Pipeline 3b238805d214906cac72303021cc4250 https://www.encodeproject.org/files/ENCFF290DDY/@@download/ENCFF290DDY.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF280NHI bam unfiltered alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF643CGH, ENCFF751TBY 1677234600 ENCODE Processing Pipeline b38666d99d31f7c7ad498a6c3f9186d1 https://www.encodeproject.org/files/ENCFF280NHI/@@download/ENCFF280NHI.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF993WWR bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF643CGH 885450985 ENCODE Processing Pipeline 122d8073c8501a4acc2dd871e813f2d9 https://www.encodeproject.org/files/ENCFF993WWR/@@download/ENCFF993WWR.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF209PBB bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF643CGH, ENCFF751TBY 1245718059 ENCODE Processing Pipeline 7445c4821731003a5e38cc2f9ddc9f3c https://www.encodeproject.org/files/ENCFF209PBB/@@download/ENCFF209PBB.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF429SWG bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF370PSF, ENCFF993WWR, ENCFF995OIG 977336686 ENCODE Processing Pipeline b3d957c3e188c5afe5b5d222a10e26a6 https://www.encodeproject.org/files/ENCFF429SWG/@@download/ENCFF429SWG.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF025JYV bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF209PBB, ENCFF370PSF, ENCFF995OIG 1026208493 ENCODE Processing Pipeline 079736be27b8adf6063eff67858fa246 https://www.encodeproject.org/files/ENCFF025JYV/@@download/ENCFF025JYV.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF244YBI bigWig signal p-value ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF209PBB, ENCFF370PSF, ENCFF993WWR, ENCFF995OIG 1056509029 ENCODE Processing Pipeline d64c45f1b286e3185e0c5d4030ccfbfe https://www.encodeproject.org/files/ENCFF244YBI/@@download/ENCFF244YBI.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF032DMC bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF209PBB, ENCFF370PSF, ENCFF993WWR, ENCFF995OIG 1273473457 ENCODE Processing Pipeline 657093738d8b781700b4bfd2821d7499 https://www.encodeproject.org/files/ENCFF032DMC/@@download/ENCFF032DMC.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF517WIH bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF209PBB, ENCFF370PSF, ENCFF995OIG 984843499 ENCODE Processing Pipeline 3a52498b29454cfe2e31843dc1f8b388 https://www.encodeproject.org/files/ENCFF517WIH/@@download/ENCFF517WIH.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF601XGO bigWig fold change over control ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF370PSF, ENCFF993WWR, ENCFF995OIG 687941407 ENCODE Processing Pipeline 4dfef98ec887fda9fbfb14de170f23f1 https://www.encodeproject.org/files/ENCFF601XGO/@@download/ENCFF601XGO.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF565RDY bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF370PSF, ENCFF993WWR, ENCFF995OIG 5693935 ENCODE Processing Pipeline 4a4ab05ed1ce47227fbcefcbea24ab6f https://www.encodeproject.org/files/ENCFF565RDY/@@download/ENCFF565RDY.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF113UWU bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF209PBB, ENCFF370PSF, ENCFF995OIG 6305370 ENCODE Processing Pipeline 5dfc07f61a705d0535abe28014845fe2 https://www.encodeproject.org/files/ENCFF113UWU/@@download/ENCFF113UWU.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF759EYE bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF209PBB, ENCFF370PSF, ENCFF993WWR, ENCFF995OIG 6733870 ENCODE Processing Pipeline 8802370e67c9efeb4c017e05283dddab https://www.encodeproject.org/files/ENCFF759EYE/@@download/ENCFF759EYE.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF838EDW bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF113UWU 13545208 ENCODE Processing Pipeline e595387e885ea30a5654e44f0a71ae93 https://www.encodeproject.org/files/ENCFF838EDW/@@download/ENCFF838EDW.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF414OTU bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF565RDY 13539307 ENCODE Processing Pipeline 5993f89b83db7b96a89a466c47396794 https://www.encodeproject.org/files/ENCFF414OTU/@@download/ENCFF414OTU.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF188OKZ bigBed narrowPeak conservative idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF520SXF 217693 ENCODE Processing Pipeline 53501cb454d8164a834623d31c909707 https://www.encodeproject.org/files/ENCFF188OKZ/@@download/ENCFF188OKZ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF233NGG bigBed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF759EYE 13575117 ENCODE Processing Pipeline af11f1f3ca9abe0854c2a13f3e0592b5 https://www.encodeproject.org/files/ENCFF233NGG/@@download/ENCFF233NGG.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF882UHR bed narrowPeak optimal idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF113UWU, ENCFF419RSJ, ENCFF565RDY, ENCFF759EYE 96010 ENCODE Processing Pipeline 852acd50121e65d74c2a177316213e72 https://www.encodeproject.org/files/ENCFF882UHR/@@download/ENCFF882UHR.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF463LWI bigBed narrowPeak optimal idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF882UHR 243125 ENCODE Processing Pipeline 57fa7cf1e66bc88c32a2f22ed9c4ee2e https://www.encodeproject.org/files/ENCFF463LWI/@@download/ENCFF463LWI.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF520SXF bed narrowPeak conservative idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF113UWU, ENCFF419RSJ, ENCFF565RDY, ENCFF759EYE 80436 ENCODE Processing Pipeline f1261f5860dc12595a945bbe8d1474dc https://www.encodeproject.org/files/ENCFF520SXF/@@download/ENCFF520SXF.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF200OIV bigBed narrowPeak conservative idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF376RVN 162648 ENCODE Processing Pipeline a9a80cf7010f4b43cfff54377263403a https://www.encodeproject.org/files/ENCFF200OIV/@@download/ENCFF200OIV.bigBed hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF726ASD bigBed narrowPeak optimal idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF756LUP 175450 ENCODE Processing Pipeline 557dae95dc086066482e6126d4db413f https://www.encodeproject.org/files/ENCFF726ASD/@@download/ENCFF726ASD.bigBed hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF376RVN bed narrowPeak conservative idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF001TDO, ENCFF774TWW, ENCFF862YTD, ENCFF868FGE 67705 ENCODE Processing Pipeline c04c1aa0a59b3b22e599b7fffffe5f70 https://www.encodeproject.org/files/ENCFF376RVN/@@download/ENCFF376RVN.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF756LUP bed narrowPeak optimal idr thresholded peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1, 2 ENCFF001TDO, ENCFF774TWW, ENCFF862YTD, ENCFF868FGE 77158 ENCODE Processing Pipeline 3d75c04365d91d1c459024b405544aae https://www.encodeproject.org/files/ENCFF756LUP/@@download/ENCFF756LUP.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF000NJV bam alignments ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NKH 1456381639 Richard Myers, HAIB ad8a03537d7aa6bb31e3e268460e84ec https://www.encodeproject.org/files/ENCFF000NJV/@@download/ENCFF000NJV.bam hg19 released biological replicates with identical biosample ENCFF000NJW bam alignments ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NKK 1553106905 Richard Myers, HAIB b71e4855f8927feaee26ea3e0484733f https://www.encodeproject.org/files/ENCFF000NJW/@@download/ENCFF000NJW.bam hg19 released biological replicates with identical biosample ENCFF000NJX bigBed broadPeak peaks ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TUH 418525 Richard Myers, HAIB 7a96ae89ef963d30c3e8cbcfc9726da0 https://www.encodeproject.org/files/ENCFF000NJX/@@download/ENCFF000NJX.bigBed hg19 released biological replicates with identical biosample ENCFF000NJY bigBed broadPeak peaks ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TUI 320201 Richard Myers, HAIB 9fb14e4cd82d17dac47865cea6afb5b1 https://www.encodeproject.org/files/ENCFF000NJY/@@download/ENCFF000NJY.bigBed hg19 released biological replicates with identical biosample ENCFF000NJZ bigWig raw signal ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 154715200 Richard Myers, HAIB 19e5ed099f043b79d1d7bcd75759581d https://www.encodeproject.org/files/ENCFF000NJZ/@@download/ENCFF000NJZ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NKA bigWig raw signal ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 164091958 Richard Myers, HAIB e33aea75dcb281fdf85b48ddc9f06ff5 https://www.encodeproject.org/files/ENCFF000NKA/@@download/ENCFF000NKA.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NKH fastq reads ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1495983143 Richard Myers, HAIB 9e40abf1b98636223ef9fccd6b59b2d4 https://www.encodeproject.org/files/ENCFF000NKH/@@download/ENCFF000NKH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NKK fastq reads ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1567916494 Richard Myers, HAIB 54ed672fecb9c5b8441ce93d025639f6 https://www.encodeproject.org/files/ENCFF000NKK/@@download/ENCFF000NKK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TUH bed broadPeak peaks ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 198549 Richard Myers, HAIB 13fbbeabad424653cb8e1c7fe1fbb3ec https://www.encodeproject.org/files/ENCFF001TUH/@@download/ENCFF001TUH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TUI bed broadPeak peaks ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 184722 Richard Myers, HAIB 0b6ecf602b7179df0595ec1ace3ed070 https://www.encodeproject.org/files/ENCFF001TUI/@@download/ENCFF001TUI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF232CCO bam unfiltered alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF002DOS, ENCFF002EIH, ENCFF807MUK 6303932851 ENCODE Processing Pipeline 7e5a867a3a129aea85a7faaf579c6ebf https://www.encodeproject.org/files/ENCFF232CCO/@@download/ENCFF232CCO.bam hg19 released experiment not submitted to GEO ENCFF002DOS fastq reads ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 2 ENCFF002EIH 2780634831 Michael Snyder, Stanford 25ef5352c1aa4f55f0390b2e00228b5c https://www.encodeproject.org/files/ENCFF002DOS/@@download/ENCFF002DOS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released experiment not submitted to GEO ENCFF002EIH fastq reads ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 1 ENCFF002DOS 2793603822 Michael Snyder, Stanford 93228c9b933e5d7399d89fe70faa3d73 https://www.encodeproject.org/files/ENCFF002EIH/@@download/ENCFF002EIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released experiment not submitted to GEO ENCFF343GJG bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF002DOS, ENCFF002EIH, ENCFF807MUK 5630567667 ENCODE Processing Pipeline 77248fb99d490240d3caf7be55df4989 https://www.encodeproject.org/files/ENCFF343GJG/@@download/ENCFF343GJG.bam hg19 released experiment not submitted to GEO ENCFF679YFV fastq reads ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF121CLA 2772977645 Michael Snyder, Stanford a92f68343cdc484476009a74913f6672 https://www.encodeproject.org/files/ENCFF679YFV/@@download/ENCFF679YFV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released experiment not submitted to GEO ENCFF121CLA fastq reads ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF679YFV 2771814193 Michael Snyder, Stanford 055d965a0d22482017b2527d14bdaf5e https://www.encodeproject.org/files/ENCFF121CLA/@@download/ENCFF121CLA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released experiment not submitted to GEO ENCFF579DNE bam unfiltered alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF121CLA, ENCFF679YFV, ENCFF807MUK 5564816876 ENCODE Processing Pipeline 55f80900e6c2cf51947abaab643889d6 https://www.encodeproject.org/files/ENCFF579DNE/@@download/ENCFF579DNE.bam hg19 released experiment not submitted to GEO ENCFF740KXF bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF002DOS, ENCFF002EIH, ENCFF643CGH 5641532600 ENCODE Processing Pipeline 8f1c0a553d96e95d5c066bdd7266013d https://www.encodeproject.org/files/ENCFF740KXF/@@download/ENCFF740KXF.bam GRCh38 released experiment not submitted to GEO ENCFF411BAG bam unfiltered alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF121CLA, ENCFF643CGH, ENCFF679YFV 5576324387 ENCODE Processing Pipeline 20715f872e8d3f3506a2f8d682161436 https://www.encodeproject.org/files/ENCFF411BAG/@@download/ENCFF411BAG.bam GRCh38 released experiment not submitted to GEO ENCFF958OLE bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF121CLA, ENCFF643CGH, ENCFF679YFV 4837726108 ENCODE Processing Pipeline d9ce6f3bc996098821efd698be86e1b8 https://www.encodeproject.org/files/ENCFF958OLE/@@download/ENCFF958OLE.bam GRCh38 released experiment not submitted to GEO ENCFF306GWT bam unfiltered alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF002DOS, ENCFF002EIH, ENCFF643CGH 6321406642 ENCODE Processing Pipeline e5d638eed016b6dc41e018d2540be4d4 https://www.encodeproject.org/files/ENCFF306GWT/@@download/ENCFF306GWT.bam GRCh38 released experiment not submitted to GEO ENCFF345DEN bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF121CLA, ENCFF679YFV, ENCFF807MUK 4828485353 ENCODE Processing Pipeline 0e70622a3b3f38aaeb535aa0ef53a181 https://www.encodeproject.org/files/ENCFF345DEN/@@download/ENCFF345DEN.bam hg19 released experiment not submitted to GEO ENCFF521VKK bigWig signal p-value ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF190EPQ, ENCFF740KXF, ENCFF950AXC 1803490142 ENCODE Processing Pipeline c3eb6dcf5ef4a8f3a2f00f7c5f342556 https://www.encodeproject.org/files/ENCFF521VKK/@@download/ENCFF521VKK.bigWig GRCh38 released experiment not submitted to GEO ENCFF075ZQQ bigWig signal p-value ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF190EPQ, ENCFF958OLE 1182773537 ENCODE Processing Pipeline ad3f7f82e7f224bea3e272e51e0f692d https://www.encodeproject.org/files/ENCFF075ZQQ/@@download/ENCFF075ZQQ.bigWig GRCh38 released experiment not submitted to GEO ENCFF717PUZ bigWig signal p-value ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF190EPQ, ENCFF740KXF, ENCFF950AXC, ENCFF958OLE 1741781392 ENCODE Processing Pipeline 0a3589b5e65ff50e89ae49dec0474a64 https://www.encodeproject.org/files/ENCFF717PUZ/@@download/ENCFF717PUZ.bigWig GRCh38 released experiment not submitted to GEO ENCFF152TJZ bigWig fold change over control ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF190EPQ, ENCFF958OLE 1223185642 ENCODE Processing Pipeline 51ace59fc16ec34b0013f309e298b1da https://www.encodeproject.org/files/ENCFF152TJZ/@@download/ENCFF152TJZ.bigWig GRCh38 released experiment not submitted to GEO ENCFF996KHW bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF190EPQ, ENCFF740KXF, ENCFF950AXC, ENCFF958OLE 7214390 ENCODE Processing Pipeline a46daf8e87ce46406955c7123bbf5bc0 https://www.encodeproject.org/files/ENCFF996KHW/@@download/ENCFF996KHW.bed.gz GRCh38 released experiment not submitted to GEO ENCFF035WWO bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF190EPQ, ENCFF958OLE 5634320 ENCODE Processing Pipeline b44b04092ca27385351a670fbabfba7c https://www.encodeproject.org/files/ENCFF035WWO/@@download/ENCFF035WWO.bed.gz GRCh38 released experiment not submitted to GEO ENCFF449WCO bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF190EPQ, ENCFF740KXF, ENCFF950AXC 6955220 ENCODE Processing Pipeline 29e2cd9643e2b5564d739a0abea6c804 https://www.encodeproject.org/files/ENCFF449WCO/@@download/ENCFF449WCO.bed.gz GRCh38 released experiment not submitted to GEO ENCFF861AGJ bigWig fold change over control ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF190EPQ, ENCFF740KXF, ENCFF950AXC 1785039668 ENCODE Processing Pipeline b9bd97c52f536b492c5888a2bd85fe6d https://www.encodeproject.org/files/ENCFF861AGJ/@@download/ENCFF861AGJ.bigWig GRCh38 released experiment not submitted to GEO ENCFF737VJU bigBed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF449WCO 13415348 ENCODE Processing Pipeline d228e54ac0904b8269a51d21bbb82a4b https://www.encodeproject.org/files/ENCFF737VJU/@@download/ENCFF737VJU.bigBed GRCh38 released experiment not submitted to GEO ENCFF616QFN bigBed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF035WWO 11417694 ENCODE Processing Pipeline 6a0b2bdc8eab4841d480ddf974ae9ba4 https://www.encodeproject.org/files/ENCFF616QFN/@@download/ENCFF616QFN.bigBed GRCh38 released experiment not submitted to GEO ENCFF176WOM bigWig fold change over control ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF345DEN, ENCFF449NNE 1220534605 ENCODE Processing Pipeline 845b4c936229c6fa48eeafe35734afb6 https://www.encodeproject.org/files/ENCFF176WOM/@@download/ENCFF176WOM.bigWig hg19 released experiment not submitted to GEO ENCFF523TOV bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF343GJG, ENCFF345DEN, ENCFF449NNE, ENCFF999EQI 7195698 ENCODE Processing Pipeline 8f36d87e8ce3eff3cef2cbf598cecb40 https://www.encodeproject.org/files/ENCFF523TOV/@@download/ENCFF523TOV.bed.gz hg19 released experiment not submitted to GEO ENCFF466ENN bigBed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF905UQM 13391290 ENCODE Processing Pipeline 613941373de1797d38d454e22a508004 https://www.encodeproject.org/files/ENCFF466ENN/@@download/ENCFF466ENN.bigBed hg19 released experiment not submitted to GEO ENCFF262ATT bigBed narrowPeak conservative idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF076BOS 191795 ENCODE Processing Pipeline 9017c7aa1bf9e8f9d06c575380126ad4 https://www.encodeproject.org/files/ENCFF262ATT/@@download/ENCFF262ATT.bigBed hg19 released experiment not submitted to GEO ENCFF826JSB bigWig fold change over control ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF190EPQ, ENCFF740KXF, ENCFF950AXC, ENCFF958OLE 2248332118 ENCODE Processing Pipeline 6a38b94d83c4dabcb11a11d58bf92a90 https://www.encodeproject.org/files/ENCFF826JSB/@@download/ENCFF826JSB.bigWig GRCh38 released experiment not submitted to GEO ENCFF268JQS bigBed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF996KHW 11270169 ENCODE Processing Pipeline 1eafb95c61f96bd682b88a5e83f4eb7a https://www.encodeproject.org/files/ENCFF268JQS/@@download/ENCFF268JQS.bigBed GRCh38 released experiment not submitted to GEO ENCFF788CJF bed narrowPeak optimal idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF035WWO, ENCFF419RSJ, ENCFF449WCO, ENCFF996KHW 126644 ENCODE Processing Pipeline 4ad34e7e12a0504adfcc6de968707f0e https://www.encodeproject.org/files/ENCFF788CJF/@@download/ENCFF788CJF.bed.gz GRCh38 released experiment not submitted to GEO ENCFF909VVP bigWig fold change over control ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF343GJG, ENCFF345DEN, ENCFF449NNE, ENCFF999EQI 2245469673 ENCODE Processing Pipeline 0b8ecbcb0b841e7453dd44dca6446b7f https://www.encodeproject.org/files/ENCFF909VVP/@@download/ENCFF909VVP.bigWig hg19 released experiment not submitted to GEO ENCFF833PWX bigBed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF523TOV 11241324 ENCODE Processing Pipeline ba745636ef78041580f69c60c960ce46 https://www.encodeproject.org/files/ENCFF833PWX/@@download/ENCFF833PWX.bigBed hg19 released experiment not submitted to GEO ENCFF409DRF bed narrowPeak conservative idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF035WWO, ENCFF419RSJ, ENCFF449WCO, ENCFF996KHW 85395 ENCODE Processing Pipeline 88d4bfa71e90eb5fec39a406c126fefe https://www.encodeproject.org/files/ENCFF409DRF/@@download/ENCFF409DRF.bed.gz GRCh38 released experiment not submitted to GEO ENCFF786IQC bigBed narrowPeak conservative idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF409DRF 244346 ENCODE Processing Pipeline 79393fb4c8834f6595afd20e6b83281f https://www.encodeproject.org/files/ENCFF786IQC/@@download/ENCFF786IQC.bigBed GRCh38 released experiment not submitted to GEO ENCFF882OPY bigWig signal p-value ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF343GJG, ENCFF449NNE, ENCFF999EQI 1387262896 ENCODE Processing Pipeline b7101ba49d5612da08af46385fa998aa https://www.encodeproject.org/files/ENCFF882OPY/@@download/ENCFF882OPY.bigWig hg19 released experiment not submitted to GEO ENCFF851DCM bigBed narrowPeak optimal idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF788CJF 318537 ENCODE Processing Pipeline b5629f3e7f239fb204a3797896fa6301 https://www.encodeproject.org/files/ENCFF851DCM/@@download/ENCFF851DCM.bigBed GRCh38 released experiment not submitted to GEO ENCFF233VRT bigWig fold change over control ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF343GJG, ENCFF449NNE, ENCFF999EQI 1761837003 ENCODE Processing Pipeline 1e47d8c6b44433abe06f3d49b2809f67 https://www.encodeproject.org/files/ENCFF233VRT/@@download/ENCFF233VRT.bigWig hg19 released experiment not submitted to GEO ENCFF739QNC bigWig signal p-value ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF343GJG, ENCFF345DEN, ENCFF449NNE, ENCFF999EQI 2091075685 ENCODE Processing Pipeline 0df9a78caaa7250ba17ee8f7d54d5480 https://www.encodeproject.org/files/ENCFF739QNC/@@download/ENCFF739QNC.bigWig hg19 released experiment not submitted to GEO ENCFF905UQM bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF343GJG, ENCFF449NNE, ENCFF999EQI 6940031 ENCODE Processing Pipeline c163f38247f58fd7e4cb93d11e470e77 https://www.encodeproject.org/files/ENCFF905UQM/@@download/ENCFF905UQM.bed.gz hg19 released experiment not submitted to GEO ENCFF507RHE bed narrowPeak optimal idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF458YFL, ENCFF523TOV, ENCFF905UQM 117007 ENCODE Processing Pipeline 645691ce6019368a11effa03e652dbb9 https://www.encodeproject.org/files/ENCFF507RHE/@@download/ENCFF507RHE.bed.gz hg19 released experiment not submitted to GEO ENCFF416XLU bigBed narrowPeak optimal idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF507RHE 241519 ENCODE Processing Pipeline bbbdc0c22b7b5ee8d7b20af9febebc3f https://www.encodeproject.org/files/ENCFF416XLU/@@download/ENCFF416XLU.bigBed hg19 released experiment not submitted to GEO ENCFF106EZW bigWig signal p-value ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF345DEN, ENCFF449NNE 1037510707 ENCODE Processing Pipeline 71f167b2a0d36044253e492843d4b089 https://www.encodeproject.org/files/ENCFF106EZW/@@download/ENCFF106EZW.bigWig hg19 released experiment not submitted to GEO ENCFF458YFL bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF345DEN, ENCFF449NNE 5634223 ENCODE Processing Pipeline cbd4afac4e509ed7b2eadbd5f7dab472 https://www.encodeproject.org/files/ENCFF458YFL/@@download/ENCFF458YFL.bed.gz hg19 released experiment not submitted to GEO ENCFF076BOS bed narrowPeak conservative idr thresholded peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF458YFL, ENCFF523TOV, ENCFF905UQM 81971 ENCODE Processing Pipeline 375fc91f67e57cd78485898a8f84e90d https://www.encodeproject.org/files/ENCFF076BOS/@@download/ENCFF076BOS.bed.gz hg19 released experiment not submitted to GEO ENCFF479GQI bigBed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 ENCFF458YFL 11402259 ENCODE Processing Pipeline 4713ae51e4e178f2337bb5c0a044b478 https://www.encodeproject.org/files/ENCFF479GQI/@@download/ENCFF479GQI.bigBed hg19 released experiment not submitted to GEO ENCFF425JLP fastq reads ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 single-ended 2384317461 Bradley Bernstein, Broad 84a188a4bdc9ae310b76fb2339e7daf2 https://www.encodeproject.org/files/ENCFF425JLP/@@download/ENCFF425JLP.fastq.gz Illumina HiSeq 2500 /files/ENCFF061PAW/, /files/ENCFF885SBP/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF796GTV fastq reads ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 1 36 single-ended 649151042 Bradley Bernstein, Broad e75131a432238b376403412b615c9fa7 https://www.encodeproject.org/files/ENCFF796GTV/@@download/ENCFF796GTV.fastq.gz Illumina HiSeq 2000 /files/ENCFF853HFC/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF352OYT bam unfiltered alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF796GTV, ENCFF807MUK 829579978 ENCODE Processing Pipeline f7c3bb75e0f565dcade3b7228adebdef https://www.encodeproject.org/files/ENCFF352OYT/@@download/ENCFF352OYT.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF104BIW bam unfiltered alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF643CGH, ENCFF796GTV 833047636 ENCODE Processing Pipeline 92310a9677f62e1e5330c69dba6dfcdf https://www.encodeproject.org/files/ENCFF104BIW/@@download/ENCFF104BIW.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF043GGB bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF796GTV, ENCFF807MUK 517371941 ENCODE Processing Pipeline 0bf1ca197a5dbed9ce194ca0a511945a https://www.encodeproject.org/files/ENCFF043GGB/@@download/ENCFF043GGB.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF358SGU bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF643CGH, ENCFF796GTV 517203242 ENCODE Processing Pipeline 21108a8a47c87bb26a5f826fb2bafafe https://www.encodeproject.org/files/ENCFF358SGU/@@download/ENCFF358SGU.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF926HJH bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF425JLP, ENCFF643CGH 981132995 ENCODE Processing Pipeline 8d5f2ac16c5f97b6e72b7294d18c8674 https://www.encodeproject.org/files/ENCFF926HJH/@@download/ENCFF926HJH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF834PGH bam unfiltered alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF425JLP, ENCFF643CGH 1727517816 ENCODE Processing Pipeline 1f33c7a7798e6d33f2ae254579a914d9 https://www.encodeproject.org/files/ENCFF834PGH/@@download/ENCFF834PGH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF799PAX bam unfiltered alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF425JLP, ENCFF807MUK 1716277508 ENCODE Processing Pipeline 2d07e68863e71a285487edcefb06ac1c https://www.encodeproject.org/files/ENCFF799PAX/@@download/ENCFF799PAX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF053FUQ bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF425JLP, ENCFF807MUK 981521713 ENCODE Processing Pipeline 58ab68dd26c211b9356de582aaf1ce32 https://www.encodeproject.org/files/ENCFF053FUQ/@@download/ENCFF053FUQ.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF170RDI bigWig fold change over control ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF042EJM, ENCFF043GGB, ENCFF053FUQ, ENCFF705RUU 1300315569 ENCODE Processing Pipeline fca545a9d4635380857fb959987abec6 https://www.encodeproject.org/files/ENCFF170RDI/@@download/ENCFF170RDI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF455ZJN bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF042EJM, ENCFF053FUQ, ENCFF705RUU 6363815 ENCODE Processing Pipeline 112873223dadbbd97b72279adcfadf15 https://www.encodeproject.org/files/ENCFF455ZJN/@@download/ENCFF455ZJN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF317YVO bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF042EJM, ENCFF043GGB, ENCFF053FUQ, ENCFF705RUU 6563920 ENCODE Processing Pipeline 8c3a254ce6a2bd7f656fed9182951c99 https://www.encodeproject.org/files/ENCFF317YVO/@@download/ENCFF317YVO.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF947IJX bed narrowPeak optimal idr thresholded peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF317YVO, ENCFF455ZJN, ENCFF799ZCH 1016359 ENCODE Processing Pipeline 33ffb92f35aa7e03fa914fe0ba386406 https://www.encodeproject.org/files/ENCFF947IJX/@@download/ENCFF947IJX.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF678NXH bigWig fold change over control ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF042EJM, ENCFF043GGB, ENCFF705RUU 505094599 ENCODE Processing Pipeline 936bf29fbe91a67578627e591fad7d09 https://www.encodeproject.org/files/ENCFF678NXH/@@download/ENCFF678NXH.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF272YRD bigBed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF317YVO 13947338 ENCODE Processing Pipeline 0153a5b931a89be6789e39ec8786df4e https://www.encodeproject.org/files/ENCFF272YRD/@@download/ENCFF272YRD.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF412AEG bigWig signal p-value ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF042EJM, ENCFF043GGB, ENCFF705RUU 1101439942 ENCODE Processing Pipeline 96a695c3a1a76819cfe82acee36ed832 https://www.encodeproject.org/files/ENCFF412AEG/@@download/ENCFF412AEG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF815IQU bigWig signal p-value ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF042EJM, ENCFF043GGB, ENCFF053FUQ, ENCFF705RUU 1435961308 ENCODE Processing Pipeline 4fee6e5b87d5db6a5bb783aa3e8a2312 https://www.encodeproject.org/files/ENCFF815IQU/@@download/ENCFF815IQU.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF799ZCH bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF042EJM, ENCFF043GGB, ENCFF705RUU 4849098 ENCODE Processing Pipeline e8902ac67406ab63ce04552e64737df6 https://www.encodeproject.org/files/ENCFF799ZCH/@@download/ENCFF799ZCH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF931QNZ bigBed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF455ZJN 13872334 ENCODE Processing Pipeline 76a9fb91d421d60143140a5801b82229 https://www.encodeproject.org/files/ENCFF931QNZ/@@download/ENCFF931QNZ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF771RZD bigBed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF459WJA 13952181 ENCODE Processing Pipeline c252f855e9333f5739b2d53288fcb712 https://www.encodeproject.org/files/ENCFF771RZD/@@download/ENCFF771RZD.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF129ORG bigWig signal p-value ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF042EJM, ENCFF053FUQ, ENCFF705RUU 1078831689 ENCODE Processing Pipeline 993309371db6c70b6f3a8a024caf3202 https://www.encodeproject.org/files/ENCFF129ORG/@@download/ENCFF129ORG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF528HJG bigWig fold change over control ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF042EJM, ENCFF053FUQ, ENCFF705RUU 1108443783 ENCODE Processing Pipeline 426ba165f061b8cb0b145d42a1ebb4bb https://www.encodeproject.org/files/ENCFF528HJG/@@download/ENCFF528HJG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF459WJA bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF170UTG, ENCFF358SGU, ENCFF567KKK, ENCFF926HJH 6564831 ENCODE Processing Pipeline 332a61319e05e1e189d3ae74c5538fe8 https://www.encodeproject.org/files/ENCFF459WJA/@@download/ENCFF459WJA.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF757SVO bigBed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF635MLJ 13867445 ENCODE Processing Pipeline 7f04551939276a514953f0d933d38540 https://www.encodeproject.org/files/ENCFF757SVO/@@download/ENCFF757SVO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF336AZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF947IJX 2051080 ENCODE Processing Pipeline ba6fb3e484f410f629ae6e73e6b41c96 https://www.encodeproject.org/files/ENCFF336AZQ/@@download/ENCFF336AZQ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF737KDC bigWig signal p-value ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF170UTG, ENCFF567KKK, ENCFF926HJH 1215600913 ENCODE Processing Pipeline 965ae440f7067a762ed15a51133d043b https://www.encodeproject.org/files/ENCFF737KDC/@@download/ENCFF737KDC.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF915YAY bigWig signal p-value ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF170UTG, ENCFF358SGU, ENCFF567KKK, ENCFF926HJH 1358278549 ENCODE Processing Pipeline d45eb851bbc8db953000ecd5878b130d https://www.encodeproject.org/files/ENCFF915YAY/@@download/ENCFF915YAY.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF698OPB bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF170UTG, ENCFF358SGU, ENCFF567KKK 4795324 ENCODE Processing Pipeline 233b2f25db7c26ec0e91c60c2c9841cd https://www.encodeproject.org/files/ENCFF698OPB/@@download/ENCFF698OPB.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF493JQI bigBed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF799ZCH 9991325 ENCODE Processing Pipeline 9de7a7dd6af7b09a48eaea850bd15ada https://www.encodeproject.org/files/ENCFF493JQI/@@download/ENCFF493JQI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF663ASA bigWig fold change over control ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF170UTG, ENCFF567KKK, ENCFF926HJH 1097067317 ENCODE Processing Pipeline 52a8016a73401fdf68fcfbae2deb6ff5 https://www.encodeproject.org/files/ENCFF663ASA/@@download/ENCFF663ASA.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF635MLJ bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF170UTG, ENCFF567KKK, ENCFF926HJH 6356783 ENCODE Processing Pipeline e1383d5f80f3814ba13b05b8c87a5f4f https://www.encodeproject.org/files/ENCFF635MLJ/@@download/ENCFF635MLJ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF695QMG bed narrowPeak optimal idr thresholded peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF459WJA, ENCFF635MLJ, ENCFF698OPB 1018421 ENCODE Processing Pipeline 03b57afea9ba47e9eb0324f47b9bf9af https://www.encodeproject.org/files/ENCFF695QMG/@@download/ENCFF695QMG.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF480XXD bigWig fold change over control ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF170UTG, ENCFF358SGU, ENCFF567KKK 504672394 ENCODE Processing Pipeline a8d26241c29a5767f0402efbc1764afb https://www.encodeproject.org/files/ENCFF480XXD/@@download/ENCFF480XXD.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF478HIR bigWig fold change over control ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF170UTG, ENCFF358SGU, ENCFF567KKK, ENCFF926HJH 1286611175 ENCODE Processing Pipeline 54c6b22e252b1ea21237597a24348428 https://www.encodeproject.org/files/ENCFF478HIR/@@download/ENCFF478HIR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF520NJD bigWig signal p-value ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF170UTG, ENCFF358SGU, ENCFF567KKK 985666082 ENCODE Processing Pipeline 66d8c412b3c3715f6bed148b90836170 https://www.encodeproject.org/files/ENCFF520NJD/@@download/ENCFF520NJD.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF340SGI bigBed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF698OPB 9921191 ENCODE Processing Pipeline 94ba0755837a6de978fd489372856cf0 https://www.encodeproject.org/files/ENCFF340SGI/@@download/ENCFF340SGI.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF412RKA bigBed narrowPeak optimal idr thresholded peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF695QMG 2054718 ENCODE Processing Pipeline b1913169d001e4f38d5c1961b95f9a69 https://www.encodeproject.org/files/ENCFF412RKA/@@download/ENCFF412RKA.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF173JBW fastq reads ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF902JCN 2302970645 Michael Snyder, Stanford fee37b10d75f93614ffa639c4e2ade96 SRA:SRR5111399 https://www.encodeproject.org/files/ENCFF173JBW/@@download/ENCFF173JBW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF662MFL fastq reads ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF611UQT 2748933650 Michael Snyder, Stanford 7c7fbdd4603f6493f98c30a631539fe6 SRA:SRR5111398 https://www.encodeproject.org/files/ENCFF662MFL/@@download/ENCFF662MFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF611UQT fastq reads ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF662MFL 2742273277 Michael Snyder, Stanford 74a065bd972b548cb7d7f456d2705e84 SRA:SRR5111398 https://www.encodeproject.org/files/ENCFF611UQT/@@download/ENCFF611UQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF902JCN fastq reads ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF173JBW 2372467622 Michael Snyder, Stanford 310dd50ad7de45916d81d8c4af4e9ceb SRA:SRR5111399 https://www.encodeproject.org/files/ENCFF902JCN/@@download/ENCFF902JCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF903CBK bam unfiltered alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF173JBW, ENCFF807MUK, ENCFF902JCN 5219319389 ENCODE Processing Pipeline 2563e13587ae02f128162964fa91d46a https://www.encodeproject.org/files/ENCFF903CBK/@@download/ENCFF903CBK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF564DZB bam unfiltered alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF611UQT, ENCFF662MFL, ENCFF807MUK 6039493727 ENCODE Processing Pipeline 1aee8fdff3ef5977cc95cd830d47207f https://www.encodeproject.org/files/ENCFF564DZB/@@download/ENCFF564DZB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF120AQL bam unfiltered alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF611UQT, ENCFF643CGH, ENCFF662MFL 6045169078 ENCODE Processing Pipeline 9d382d0a49d21d2f732f163e79d90def https://www.encodeproject.org/files/ENCFF120AQL/@@download/ENCFF120AQL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF398WCS bam unfiltered alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF173JBW, ENCFF643CGH, ENCFF902JCN 5223922972 ENCODE Processing Pipeline 4b869657a2d154f38db17716e83d6c15 https://www.encodeproject.org/files/ENCFF398WCS/@@download/ENCFF398WCS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF091YMR bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF173JBW, ENCFF807MUK, ENCFF902JCN 4405488197 ENCODE Processing Pipeline a345e0d9a6cfb9533d2e1ce1f6c91975 https://www.encodeproject.org/files/ENCFF091YMR/@@download/ENCFF091YMR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF632BDC bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF611UQT, ENCFF662MFL, ENCFF807MUK 5151573614 ENCODE Processing Pipeline 42bda5180b55a2d4d5c8a86267340c72 https://www.encodeproject.org/files/ENCFF632BDC/@@download/ENCFF632BDC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF737QWX bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF611UQT, ENCFF643CGH, ENCFF662MFL 5154502247 ENCODE Processing Pipeline a3843f0184ee828c7a793fad680b5e0a https://www.encodeproject.org/files/ENCFF737QWX/@@download/ENCFF737QWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF829UMN bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF173JBW, ENCFF643CGH, ENCFF902JCN 4408164762 ENCODE Processing Pipeline 634a529954b2c1143cf4db764f7d5b71 https://www.encodeproject.org/files/ENCFF829UMN/@@download/ENCFF829UMN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF864SKM bigWig signal p-value ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF091YMR 1463193615 ENCODE Processing Pipeline 10d1774ba47150065c8fbc700e8d0826 https://www.encodeproject.org/files/ENCFF864SKM/@@download/ENCFF864SKM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF529BXO bigWig signal p-value ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF632BDC 1461982517 ENCODE Processing Pipeline 03a4f5d7b94cb61c31b81bd32a3e6437 https://www.encodeproject.org/files/ENCFF529BXO/@@download/ENCFF529BXO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF030AWI bigWig signal p-value ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF091YMR, ENCFF632BDC 2005489214 ENCODE Processing Pipeline 43e55cc3e8e938a7e2429132917a3a18 https://www.encodeproject.org/files/ENCFF030AWI/@@download/ENCFF030AWI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF946UMN bigWig fold change over control ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF091YMR 1472823270 ENCODE Processing Pipeline 030192c19b8bb9b7d5c2817516756107 https://www.encodeproject.org/files/ENCFF946UMN/@@download/ENCFF946UMN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF526QVF bigWig fold change over control ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF632BDC 1477600184 ENCODE Processing Pipeline c48eec0f5f70867b06d16f9f10f2bba1 https://www.encodeproject.org/files/ENCFF526QVF/@@download/ENCFF526QVF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF401ECS bigWig fold change over control ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF091YMR, ENCFF632BDC 2043945474 ENCODE Processing Pipeline eb53eb143f3ab13a050de35686cf853a https://www.encodeproject.org/files/ENCFF401ECS/@@download/ENCFF401ECS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF801SBR bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF091YMR 6895929 ENCODE Processing Pipeline 4e6346fb1658b2f807cabf90b60b5ba1 https://www.encodeproject.org/files/ENCFF801SBR/@@download/ENCFF801SBR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF227SFY bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF632BDC 6750244 ENCODE Processing Pipeline 304f675884eb1ae88c242b57b95bafc0 https://www.encodeproject.org/files/ENCFF227SFY/@@download/ENCFF227SFY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF327PLW bigBed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF801SBR 13353524 ENCODE Processing Pipeline e01534411d81f1164d653752d53ac1f3 https://www.encodeproject.org/files/ENCFF327PLW/@@download/ENCFF327PLW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF369FSD bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF091YMR, ENCFF632BDC 7166820 ENCODE Processing Pipeline 2d64eb6cc57b804022c511010dd099f1 https://www.encodeproject.org/files/ENCFF369FSD/@@download/ENCFF369FSD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF229VFN bigBed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF227SFY 11290365 ENCODE Processing Pipeline f11beb497d3e0af28abda333a156a9c9 https://www.encodeproject.org/files/ENCFF229VFN/@@download/ENCFF229VFN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF610LSI bigBed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF369FSD 13167768 ENCODE Processing Pipeline 70cdb566865569419baa966c78f396eb https://www.encodeproject.org/files/ENCFF610LSI/@@download/ENCFF610LSI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF632HLA bed narrowPeak conservative idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF227SFY, ENCFF369FSD, ENCFF801SBR 96214 ENCODE Processing Pipeline ea0c34e6c597414abe52f8c5e689a854 https://www.encodeproject.org/files/ENCFF632HLA/@@download/ENCFF632HLA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF847XOV bigBed narrowPeak conservative idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF632HLA 230511 ENCODE Processing Pipeline 5c037bd7e8ba7d0be8d3e0fe14fb55d0 https://www.encodeproject.org/files/ENCFF847XOV/@@download/ENCFF847XOV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF482SMS bed narrowPeak optimal idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF227SFY, ENCFF369FSD, ENCFF801SBR 129838 ENCODE Processing Pipeline 870f0f8fe6938234d770dd4484ff8edc https://www.encodeproject.org/files/ENCFF482SMS/@@download/ENCFF482SMS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF018JUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF482SMS 282284 ENCODE Processing Pipeline 389fff5bfc9db795eab1655b7fa98088 https://www.encodeproject.org/files/ENCFF018JUJ/@@download/ENCFF018JUJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF210FRL bigWig signal p-value ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF829UMN 1368437615 ENCODE Processing Pipeline d96aadbd1798231436ac363ae8d29ed7 https://www.encodeproject.org/files/ENCFF210FRL/@@download/ENCFF210FRL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF259YND bigWig signal p-value ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF737QWX 1376705278 ENCODE Processing Pipeline 390a6bae1f83340833981f1b1d5ffe0f https://www.encodeproject.org/files/ENCFF259YND/@@download/ENCFF259YND.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF656OTW bigWig signal p-value ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF737QWX, ENCFF829UMN 2007299863 ENCODE Processing Pipeline b7e466ee00401677e48386182260fbfe https://www.encodeproject.org/files/ENCFF656OTW/@@download/ENCFF656OTW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF934WXE bigWig fold change over control ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF829UMN 1474757016 ENCODE Processing Pipeline df03bec234178952e97b4d426711dc71 https://www.encodeproject.org/files/ENCFF934WXE/@@download/ENCFF934WXE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF589KNR bigWig fold change over control ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF737QWX 1490560618 ENCODE Processing Pipeline ba933b99bc4a6be38f9ef296b187b30c https://www.encodeproject.org/files/ENCFF589KNR/@@download/ENCFF589KNR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF916QDA bigWig fold change over control ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF737QWX, ENCFF829UMN 2046144500 ENCODE Processing Pipeline 229ed3aa73e935cf30a85ecf5b9f2ce6 https://www.encodeproject.org/files/ENCFF916QDA/@@download/ENCFF916QDA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF992AAW bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF829UMN 6775170 ENCODE Processing Pipeline e2e3bf1e244bc67d8c11d0c9d341b5ef https://www.encodeproject.org/files/ENCFF992AAW/@@download/ENCFF992AAW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF310HTQ bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF737QWX 6642005 ENCODE Processing Pipeline 5353a063430b480d9221a5bbcabe7540 https://www.encodeproject.org/files/ENCFF310HTQ/@@download/ENCFF310HTQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF158SUB bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF737QWX, ENCFF829UMN 7132846 ENCODE Processing Pipeline cb8210c2a33e5638b979146dc59b7e74 https://www.encodeproject.org/files/ENCFF158SUB/@@download/ENCFF158SUB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF791WEG bigBed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF992AAW 13368415 ENCODE Processing Pipeline ad1727d49672b7a4d81e543d1d055f2c https://www.encodeproject.org/files/ENCFF791WEG/@@download/ENCFF791WEG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF583DYT bigBed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF310HTQ 11298175 ENCODE Processing Pipeline 18879b1ce4ede774331ea961ad97f0f4 https://www.encodeproject.org/files/ENCFF583DYT/@@download/ENCFF583DYT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF480SEN bigBed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF158SUB 13182033 ENCODE Processing Pipeline 7118f32b03bd4142dddd6baf47bea071 https://www.encodeproject.org/files/ENCFF480SEN/@@download/ENCFF480SEN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF098AMT bed narrowPeak conservative idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF158SUB, ENCFF310HTQ, ENCFF419RSJ, ENCFF992AAW 94868 ENCODE Processing Pipeline e6875ed2e9c1fe07df7b7e39668132a1 https://www.encodeproject.org/files/ENCFF098AMT/@@download/ENCFF098AMT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF067URE bigBed narrowPeak conservative idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF098AMT 229620 ENCODE Processing Pipeline 2b6ed6ff3c6fefe6a85b2b7125d7202a https://www.encodeproject.org/files/ENCFF067URE/@@download/ENCFF067URE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF322YKQ bed narrowPeak optimal idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF158SUB, ENCFF310HTQ, ENCFF419RSJ, ENCFF992AAW 124957 ENCODE Processing Pipeline 8da488b52b9e07662279b4c2750301bd https://www.encodeproject.org/files/ENCFF322YKQ/@@download/ENCFF322YKQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF685QUM bigBed narrowPeak optimal idr thresholded peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF322YKQ 276124 ENCODE Processing Pipeline 7cefaa20bf77ea831669c98543515a6d https://www.encodeproject.org/files/ENCFF685QUM/@@download/ENCFF685QUM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF587YWF fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 2 ENCFF057MPH 692859194 Michael Snyder, Stanford 6e0235e0b74661703a92b385e4848733 https://www.encodeproject.org/files/ENCFF587YWF/@@download/ENCFF587YWF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF690DPC fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 1 ENCFF854ZCZ 502208082 Michael Snyder, Stanford b096de4c872a8a1959cde9dae93c1427 https://www.encodeproject.org/files/ENCFF690DPC/@@download/ENCFF690DPC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF854ZCZ fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 2 ENCFF690DPC 516086556 Michael Snyder, Stanford e131a10574739b562ccdd2b24e4defd6 https://www.encodeproject.org/files/ENCFF854ZCZ/@@download/ENCFF854ZCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF057MPH fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 1 ENCFF587YWF 688608137 Michael Snyder, Stanford 74b6cdc5fa7b4877879d0e9bc8690fe5 https://www.encodeproject.org/files/ENCFF057MPH/@@download/ENCFF057MPH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF531KER fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 1 ENCFF234NGI 4021638518 Michael Snyder, Stanford 1cc785e5dcc89347296762b4d80e206f SRA:SRR6214311 https://www.encodeproject.org/files/ENCFF531KER/@@download/ENCFF531KER.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF863GPM fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 2 ENCFF315FTB 3140339967 Michael Snyder, Stanford d0f236e7d3c67abe71805699441f2527 SRA:SRR6214312 https://www.encodeproject.org/files/ENCFF863GPM/@@download/ENCFF863GPM.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF315FTB fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 1 ENCFF863GPM 2721885523 Michael Snyder, Stanford bc6c3b1fcf5591166015bf49120ba2be SRA:SRR6214312 https://www.encodeproject.org/files/ENCFF315FTB/@@download/ENCFF315FTB.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF234NGI fastq reads ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 2 ENCFF531KER 4567208858 Michael Snyder, Stanford 191ad412160c288186b0802f38aea2a7 SRA:SRR6214311 https://www.encodeproject.org/files/ENCFF234NGI/@@download/ENCFF234NGI.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF908LHA bam unfiltered alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF315FTB, ENCFF643CGH, ENCFF863GPM 5696026290 ENCODE Processing Pipeline 12f949d31d7e57833c203847ef817c21 https://www.encodeproject.org/files/ENCFF908LHA/@@download/ENCFF908LHA.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF145AAY bam unfiltered alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF234NGI, ENCFF531KER, ENCFF643CGH 8056728760 ENCODE Processing Pipeline d7c07956a71524abd4d05b445aa32bb3 https://www.encodeproject.org/files/ENCFF145AAY/@@download/ENCFF145AAY.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF547XPS bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF315FTB, ENCFF643CGH, ENCFF863GPM 3919869211 ENCODE Processing Pipeline 8913fb1e591cadceb364efdbee5df5c6 https://www.encodeproject.org/files/ENCFF547XPS/@@download/ENCFF547XPS.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF938OSW bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF234NGI, ENCFF531KER, ENCFF643CGH 6129482922 ENCODE Processing Pipeline 00e824e80ccb339c3014997e21e82a9f https://www.encodeproject.org/files/ENCFF938OSW/@@download/ENCFF938OSW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF061UXP bam unfiltered alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF315FTB, ENCFF807MUK, ENCFF863GPM 5690781281 ENCODE Processing Pipeline 1886776dee09a994d514913dd1124c39 https://www.encodeproject.org/files/ENCFF061UXP/@@download/ENCFF061UXP.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF114DTD bam unfiltered alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF234NGI, ENCFF531KER, ENCFF807MUK 8046462473 ENCODE Processing Pipeline c194cf4be2f991e5731b87cd13157fe5 https://www.encodeproject.org/files/ENCFF114DTD/@@download/ENCFF114DTD.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF053SKK bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF234NGI, ENCFF531KER, ENCFF807MUK 6122833273 ENCODE Processing Pipeline 002ac3341649c9cc9449f2e80efb04b2 https://www.encodeproject.org/files/ENCFF053SKK/@@download/ENCFF053SKK.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF527ONV bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF315FTB, ENCFF807MUK, ENCFF863GPM 3915744041 ENCODE Processing Pipeline 5b5a069e1d6e1805715650b9030de4d1 https://www.encodeproject.org/files/ENCFF527ONV/@@download/ENCFF527ONV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF345EQW bigWig signal p-value ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF053SKK, ENCFF182WHU 1467647549 ENCODE Processing Pipeline d8e786f3197084d4e1c2158354f82aed https://www.encodeproject.org/files/ENCFF345EQW/@@download/ENCFF345EQW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF260CNF bigWig fold change over control ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF053SKK, ENCFF182WHU 1987548308 ENCODE Processing Pipeline 0369d42a45fa8e03e5d3b30db1e6fabb https://www.encodeproject.org/files/ENCFF260CNF/@@download/ENCFF260CNF.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF528RHA bigWig signal p-value ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF527ONV 1244853372 ENCODE Processing Pipeline fcfd1caaf59a0cfe53e65733e8a224d9 https://www.encodeproject.org/files/ENCFF528RHA/@@download/ENCFF528RHA.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF011BUR bigWig signal p-value ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF053SKK, ENCFF182WHU, ENCFF527ONV 1926056520 ENCODE Processing Pipeline 03aae419a5bf505c938a140adabd1ebe https://www.encodeproject.org/files/ENCFF011BUR/@@download/ENCFF011BUR.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF418OFY bigWig fold change over control ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF527ONV 1543186773 ENCODE Processing Pipeline e703d4e57663cea086c37cbb8cc8289a https://www.encodeproject.org/files/ENCFF418OFY/@@download/ENCFF418OFY.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF068KEX bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF053SKK, ENCFF182WHU, ENCFF527ONV 7252117 ENCODE Processing Pipeline 9c19718185d3c2a9537175c7fe720de0 https://www.encodeproject.org/files/ENCFF068KEX/@@download/ENCFF068KEX.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF334YYA bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF053SKK, ENCFF182WHU 6999072 ENCODE Processing Pipeline 298f99ed0cb8c194695c8ae3a4f69c6c https://www.encodeproject.org/files/ENCFF334YYA/@@download/ENCFF334YYA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF832NNV bigBed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF334YYA 11399330 ENCODE Processing Pipeline 7c220de656696498c1267b366bbf34a3 https://www.encodeproject.org/files/ENCFF832NNV/@@download/ENCFF832NNV.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF162SND bigBed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF851VOU 11213483 ENCODE Processing Pipeline 75fc9b2a73dfd6f13d4bee3bec66f55d https://www.encodeproject.org/files/ENCFF162SND/@@download/ENCFF162SND.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF061HZW bigWig fold change over control ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF053SKK, ENCFF182WHU, ENCFF527ONV 2402341370 ENCODE Processing Pipeline d2079b8e9cb458556e63b5fa8c47c961 https://www.encodeproject.org/files/ENCFF061HZW/@@download/ENCFF061HZW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF725VSD bed narrowPeak conservative idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF001TDO, ENCFF068KEX, ENCFF334YYA, ENCFF851VOU 114465 ENCODE Processing Pipeline f6c6ed72218984c06448ec0c0bdad5ab https://www.encodeproject.org/files/ENCFF725VSD/@@download/ENCFF725VSD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF061NIC bigBed narrowPeak conservative idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF725VSD 258920 ENCODE Processing Pipeline 0f31011e0667c0d65fc963abacfbf658 https://www.encodeproject.org/files/ENCFF061NIC/@@download/ENCFF061NIC.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF851VOU bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF527ONV 6348836 ENCODE Processing Pipeline 7d58317bcc1ae50af900f4ebf701b643 https://www.encodeproject.org/files/ENCFF851VOU/@@download/ENCFF851VOU.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF034QXX bigBed narrowPeak optimal idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF308CQD 269147 ENCODE Processing Pipeline 9081369c62d04e2103b77c4656188adf https://www.encodeproject.org/files/ENCFF034QXX/@@download/ENCFF034QXX.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF119LVJ bigBed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF068KEX 11353929 ENCODE Processing Pipeline 9e757e47ac1fb8caa536bfe5c8ac8900 https://www.encodeproject.org/files/ENCFF119LVJ/@@download/ENCFF119LVJ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF308CQD bed narrowPeak optimal idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF001TDO, ENCFF068KEX, ENCFF334YYA, ENCFF851VOU 122493 ENCODE Processing Pipeline c31fe4efb08f3e2ca3ffdbbc0827db23 https://www.encodeproject.org/files/ENCFF308CQD/@@download/ENCFF308CQD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF307NVK bigWig signal p-value ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF810LLR, ENCFF938OSW 1954099644 ENCODE Processing Pipeline da0b9c6e0c6f6e932a375fc0f2072deb https://www.encodeproject.org/files/ENCFF307NVK/@@download/ENCFF307NVK.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF418IIP bigWig fold change over control ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF810LLR, ENCFF938OSW 1987265102 ENCODE Processing Pipeline 0cc906d35243461d2c7544fd9127cf33 https://www.encodeproject.org/files/ENCFF418IIP/@@download/ENCFF418IIP.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF358RUV bigWig signal p-value ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF547XPS, ENCFF810LLR 1426879970 ENCODE Processing Pipeline 54d8483bc1c511c21096e4082017115e https://www.encodeproject.org/files/ENCFF358RUV/@@download/ENCFF358RUV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF490DBO bigWig signal p-value ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF547XPS, ENCFF810LLR, ENCFF938OSW 1945995975 ENCODE Processing Pipeline 319b9d55f878ff05fb8da08b53150804 https://www.encodeproject.org/files/ENCFF490DBO/@@download/ENCFF490DBO.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF960JSB bigWig fold change over control ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF547XPS, ENCFF810LLR 1544525872 ENCODE Processing Pipeline e050f6e98c3be29ef92e41421aa73e4b https://www.encodeproject.org/files/ENCFF960JSB/@@download/ENCFF960JSB.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF935ARE bigWig fold change over control ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF547XPS, ENCFF810LLR, ENCFF938OSW 2425608096 ENCODE Processing Pipeline 063e737f013fd9347ad04dd4c2d7bc8c https://www.encodeproject.org/files/ENCFF935ARE/@@download/ENCFF935ARE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF681WQR bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF810LLR, ENCFF938OSW 7001353 ENCODE Processing Pipeline 6b0bee1d358a886a407e56a6a55395ab https://www.encodeproject.org/files/ENCFF681WQR/@@download/ENCFF681WQR.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF042GAM bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF547XPS, ENCFF810LLR 6352198 ENCODE Processing Pipeline f12181ae277ab52029b389598ef224bf https://www.encodeproject.org/files/ENCFF042GAM/@@download/ENCFF042GAM.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF907PKH bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF547XPS, ENCFF810LLR, ENCFF938OSW 7256454 ENCODE Processing Pipeline b0334a009e11a8f8e6448c2a06b5ca53 https://www.encodeproject.org/files/ENCFF907PKH/@@download/ENCFF907PKH.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF465WBL bigBed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF681WQR 11417933 ENCODE Processing Pipeline cadf74e46a7425b0994c2cca693776c4 https://www.encodeproject.org/files/ENCFF465WBL/@@download/ENCFF465WBL.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF467FJZ bigBed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF042GAM 11227855 ENCODE Processing Pipeline 7986e48805b974a609c5289755a65516 https://www.encodeproject.org/files/ENCFF467FJZ/@@download/ENCFF467FJZ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF464EXO bigBed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF907PKH 11364832 ENCODE Processing Pipeline 6cc59aa011a62a043d957ac45ac1a3ea https://www.encodeproject.org/files/ENCFF464EXO/@@download/ENCFF464EXO.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF414UWR bed narrowPeak conservative idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF042GAM, ENCFF419RSJ, ENCFF681WQR, ENCFF907PKH 115184 ENCODE Processing Pipeline ed4d4adda7d5e6b0b2ce88d9d67965c3 https://www.encodeproject.org/files/ENCFF414UWR/@@download/ENCFF414UWR.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF902CIF bigBed narrowPeak conservative idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF414UWR 261529 ENCODE Processing Pipeline e5d38c443ffd95b5b5636319dd32b68b https://www.encodeproject.org/files/ENCFF902CIF/@@download/ENCFF902CIF.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF852JPW bed narrowPeak optimal idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF042GAM, ENCFF419RSJ, ENCFF681WQR, ENCFF907PKH 123286 ENCODE Processing Pipeline a6ab384195471b7c43d49078dedf3c7f https://www.encodeproject.org/files/ENCFF852JPW/@@download/ENCFF852JPW.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF854YXW bigBed narrowPeak optimal idr thresholded peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF852JPW 273139 ENCODE Processing Pipeline b459e91506cc5cd5309eef8e64a4c028 https://www.encodeproject.org/files/ENCFF854YXW/@@download/ENCFF854YXW.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF561XFC fastq reads ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 1 75 single-ended 1428840605 Bradley Bernstein, Broad 5ef9a97294ad78cb31a78bd39be599f0 SRA:SRR5833223 https://www.encodeproject.org/files/ENCFF561XFC/@@download/ENCFF561XFC.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released ENCFF425QLF fastq reads ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1279064955 Bradley Bernstein, Broad 9ea65ef1a1d37d97a07d39bc3b5a9180 SRA:SRR5833224 https://www.encodeproject.org/files/ENCFF425QLF/@@download/ENCFF425QLF.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released ENCFF725MHO bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF807MUK 1537507271 ENCODE Processing Pipeline 582dcb8183b2b29f71a220d8e0847139 https://www.encodeproject.org/files/ENCFF725MHO/@@download/ENCFF725MHO.bam hg19 released ENCFF531BVQ bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF643CGH 1539477321 ENCODE Processing Pipeline 8ab828ab2ebb454186e89eb7216de859 https://www.encodeproject.org/files/ENCFF531BVQ/@@download/ENCFF531BVQ.bam GRCh38 released ENCFF274KZU bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF643CGH 1740790670 ENCODE Processing Pipeline 12fbcc8a4ed6db0079c09b841e91e7d4 https://www.encodeproject.org/files/ENCFF274KZU/@@download/ENCFF274KZU.bam GRCh38 released ENCFF168LEX bam unfiltered alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF807MUK 1738172998 ENCODE Processing Pipeline 2f65a92863c3e92d4b367fd3efcf5610 https://www.encodeproject.org/files/ENCFF168LEX/@@download/ENCFF168LEX.bam hg19 released ENCFF145BPW bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF643CGH 1191857576 ENCODE Processing Pipeline bb903f6c465c637ef14ec201007d1ebc https://www.encodeproject.org/files/ENCFF145BPW/@@download/ENCFF145BPW.bam GRCh38 released ENCFF207IEO bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF643CGH 1421144123 ENCODE Processing Pipeline 31311f887a683b2dbf343f4f3e735535 https://www.encodeproject.org/files/ENCFF207IEO/@@download/ENCFF207IEO.bam GRCh38 released ENCFF666GAR bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF807MUK 1416629118 ENCODE Processing Pipeline a878998dd9e0c4314c563fbbddc0cb92 https://www.encodeproject.org/files/ENCFF666GAR/@@download/ENCFF666GAR.bam hg19 released ENCFF965XIE bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF807MUK 1187859612 ENCODE Processing Pipeline 84842553ed9e716b73d56a3158fb018f https://www.encodeproject.org/files/ENCFF965XIE/@@download/ENCFF965XIE.bam hg19 released ENCFF797STP bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF207IEO, ENCFF401XXH 1166818284 ENCODE Processing Pipeline 1c28d5094e9275b796aa75b170494275 https://www.encodeproject.org/files/ENCFF797STP/@@download/ENCFF797STP.bigWig GRCh38 released ENCFF130DUS bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 1020468530 ENCODE Processing Pipeline 9297970e55134353dd252c6317e030b9 https://www.encodeproject.org/files/ENCFF130DUS/@@download/ENCFF130DUS.bigWig hg19 released ENCFF109KIA bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF145BPW, ENCFF401XXH 851730239 ENCODE Processing Pipeline de9e257bf3f3c849ec16ff1995250a5e https://www.encodeproject.org/files/ENCFF109KIA/@@download/ENCFF109KIA.bigWig GRCh38 released ENCFF333XID bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF145BPW, ENCFF207IEO, ENCFF401XXH 1120880699 ENCODE Processing Pipeline c7221e2153e28ea8ba593489bffd78b7 https://www.encodeproject.org/files/ENCFF333XID/@@download/ENCFF333XID.bigWig GRCh38 released ENCFF669RXE bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 870304180 ENCODE Processing Pipeline 0284402506ec60b239696fe8c7c18068 https://www.encodeproject.org/files/ENCFF669RXE/@@download/ENCFF669RXE.bigWig hg19 released ENCFF759MPM bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF207IEO, ENCFF401XXH 952116942 ENCODE Processing Pipeline 0a8ffbf76f4a50092d02bba447d43abe https://www.encodeproject.org/files/ENCFF759MPM/@@download/ENCFF759MPM.bigWig GRCh38 released ENCFF806NNV bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF145BPW, ENCFF401XXH 1011757298 ENCODE Processing Pipeline 48f3caf771084a3aeea12bf06e066614 https://www.encodeproject.org/files/ENCFF806NNV/@@download/ENCFF806NNV.bigWig GRCh38 released ENCFF744YTU bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 962674325 ENCODE Processing Pipeline 0205963cbc44d0d5750d0e1a939ce941 https://www.encodeproject.org/files/ENCFF744YTU/@@download/ENCFF744YTU.bigWig hg19 released ENCFF929PZJ bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 961582119 ENCODE Processing Pipeline 3783291dcfa1435040f36b81ae8430a7 https://www.encodeproject.org/files/ENCFF929PZJ/@@download/ENCFF929PZJ.bigWig hg19 released ENCFF588ZZF bigWig signal p-value ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR, ENCFF965XIE 1262303976 ENCODE Processing Pipeline 8f632134dd46c2a5e030b711ff4c9aa6 https://www.encodeproject.org/files/ENCFF588ZZF/@@download/ENCFF588ZZF.bigWig hg19 released ENCFF666BGO bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF145BPW, ENCFF207IEO, ENCFF401XXH 6736762 ENCODE Processing Pipeline c4e6fec14efe5f6760afacf71a5d2e97 https://www.encodeproject.org/files/ENCFF666BGO/@@download/ENCFF666BGO.bed.gz GRCh38 released ENCFF213GXY bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF145BPW, ENCFF207IEO, ENCFF401XXH 1346960704 ENCODE Processing Pipeline b8ea21a5747c8cdc940963f35f9dfdf0 https://www.encodeproject.org/files/ENCFF213GXY/@@download/ENCFF213GXY.bigWig GRCh38 released ENCFF396XXM bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF982HET 13609508 ENCODE Processing Pipeline 28e3329f7da431a98314b85975071940 https://www.encodeproject.org/files/ENCFF396XXM/@@download/ENCFF396XXM.bigBed hg19 released ENCFF608GYJ bed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF728BVI, ENCFF893XGS, ENCFF982HET 31708 ENCODE Processing Pipeline c81800fc085b810e7fbc397d75bd9024 https://www.encodeproject.org/files/ENCFF608GYJ/@@download/ENCFF608GYJ.bed.gz hg19 released ENCFF042FRR bigWig fold change over control ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR, ENCFF965XIE 1352913777 ENCODE Processing Pipeline e1d7ef33de4e9e10d4ce78f9b1cfd1b3 https://www.encodeproject.org/files/ENCFF042FRR/@@download/ENCFF042FRR.bigWig hg19 released ENCFF389WNE bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF449EPM 13572807 ENCODE Processing Pipeline ec74e20dbcc350294da72e2ec68021d6 https://www.encodeproject.org/files/ENCFF389WNE/@@download/ENCFF389WNE.bigBed GRCh38 released ENCFF650XKL bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF728BVI 13360953 ENCODE Processing Pipeline 92c95d7e761eb7b19c59d1edfc79db79 https://www.encodeproject.org/files/ENCFF650XKL/@@download/ENCFF650XKL.bigBed hg19 released ENCFF337UUV bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF207IEO, ENCFF401XXH 5610937 ENCODE Processing Pipeline d56a1d49a9ac69b547aaaac5f3d34bfa https://www.encodeproject.org/files/ENCFF337UUV/@@download/ENCFF337UUV.bed.gz GRCh38 released ENCFF687SSY bed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF337UUV, ENCFF419RSJ, ENCFF449EPM, ENCFF666BGO 39468 ENCODE Processing Pipeline b0bfa9dc8a1cb4a71bf0ae3b5bebd933 https://www.encodeproject.org/files/ENCFF687SSY/@@download/ENCFF687SSY.bed.gz GRCh38 released ENCFF982HET bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 5695720 ENCODE Processing Pipeline dacd80e8055a8eea9128c4bd72dea1e1 https://www.encodeproject.org/files/ENCFF982HET/@@download/ENCFF982HET.bed.gz hg19 released ENCFF893XGS bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 5899643 ENCODE Processing Pipeline 6228031582af1a85c88261d6557e1cca https://www.encodeproject.org/files/ENCFF893XGS/@@download/ENCFF893XGS.bed.gz hg19 released ENCFF414HOK bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF893XGS 13567898 ENCODE Processing Pipeline f15b586d21924fb30fb50142459e77f3 https://www.encodeproject.org/files/ENCFF414HOK/@@download/ENCFF414HOK.bigBed hg19 released ENCFF814CZI bed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF728BVI, ENCFF893XGS, ENCFF982HET 31983 ENCODE Processing Pipeline 7f6c46172d37388e3b8ae753494e6392 https://www.encodeproject.org/files/ENCFF814CZI/@@download/ENCFF814CZI.bed.gz hg19 released ENCFF449EPM bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF145BPW, ENCFF401XXH 5670813 ENCODE Processing Pipeline 66b508644ec719e4769bba8a1ba7b297 https://www.encodeproject.org/files/ENCFF449EPM/@@download/ENCFF449EPM.bed.gz GRCh38 released ENCFF728BVI bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR, ENCFF965XIE 6993124 ENCODE Processing Pipeline c2740d3295c8c6869791e9bcb063c7de https://www.encodeproject.org/files/ENCFF728BVI/@@download/ENCFF728BVI.bed.gz hg19 released ENCFF319HCQ bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF666BGO 13574854 ENCODE Processing Pipeline 18d11faf5fe045fe1ad7a52a812107fd https://www.encodeproject.org/files/ENCFF319HCQ/@@download/ENCFF319HCQ.bigBed GRCh38 released ENCFF627GPM bed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF337UUV, ENCFF419RSJ, ENCFF449EPM, ENCFF666BGO 35996 ENCODE Processing Pipeline 388f2940dcd454b7bddb4547c4ffd076 https://www.encodeproject.org/files/ENCFF627GPM/@@download/ENCFF627GPM.bed.gz GRCh38 released ENCFF278JOC bigBed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF627GPM 149779 ENCODE Processing Pipeline 45314f0e85e3b5db4f497609e7b32b4b https://www.encodeproject.org/files/ENCFF278JOC/@@download/ENCFF278JOC.bigBed GRCh38 released ENCFF404XDM bigBed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF687SSY 136976 ENCODE Processing Pipeline 520275c50dce43f2879755db7a9c1c8d https://www.encodeproject.org/files/ENCFF404XDM/@@download/ENCFF404XDM.bigBed GRCh38 released ENCFF883NKQ bigBed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF337UUV 11486047 ENCODE Processing Pipeline 731820cfe3f2e4dd7fd9c9e98c34dc59 https://www.encodeproject.org/files/ENCFF883NKQ/@@download/ENCFF883NKQ.bigBed GRCh38 released ENCFF259XKL bigBed narrowPeak conservative idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF608GYJ 122149 ENCODE Processing Pipeline 87999de98357e7f46fa656eabfe9f2f5 https://www.encodeproject.org/files/ENCFF259XKL/@@download/ENCFF259XKL.bigBed hg19 released ENCFF084OBR bigBed narrowPeak optimal idr thresholded peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF814CZI 123327 ENCODE Processing Pipeline b44c6a88374b7d2f73cfe1ac574cc832 https://www.encodeproject.org/files/ENCFF084OBR/@@download/ENCFF084OBR.bigBed hg19 released ENCFF251MTB bam unfiltered alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJR, ENCFF002EJV, ENCFF807MUK 6351573444 ENCODE Processing Pipeline c9721d25dc1032eb24d24cf04986ee99 https://www.encodeproject.org/files/ENCFF251MTB/@@download/ENCFF251MTB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF667MUN bam unfiltered alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJM, ENCFF002EJP, ENCFF807MUK 6521866084 ENCODE Processing Pipeline bba8e2a5b1c14e067a1dffec2c2e15a9 https://www.encodeproject.org/files/ENCFF667MUN/@@download/ENCFF667MUN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJM fastq reads ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EJP 2990179414 Michael Snyder, Stanford 55cdebb113c07aa44749ae11cd957777 SRA:SRR6213032 https://www.encodeproject.org/files/ENCFF002EJM/@@download/ENCFF002EJM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJP fastq reads ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJM 2956493807 Michael Snyder, Stanford 64164dda960c36c2861581bbae124659 SRA:SRR6213032 https://www.encodeproject.org/files/ENCFF002EJP/@@download/ENCFF002EJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJR fastq reads ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EJV 2897639225 Michael Snyder, Stanford 13c78d5de4a2de209bb4093e611d0351 SRA:SRR6213031 https://www.encodeproject.org/files/ENCFF002EJR/@@download/ENCFF002EJR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJV fastq reads ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EJR 2932347961 Michael Snyder, Stanford 2fd3d254933fb2c17bfd517946274622 SRA:SRR6213031 https://www.encodeproject.org/files/ENCFF002EJV/@@download/ENCFF002EJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF198LHP bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJM, ENCFF002EJP, ENCFF807MUK 5587591205 ENCODE Processing Pipeline a030b60d4f40cb404d16f3ba5f2d0a36 https://www.encodeproject.org/files/ENCFF198LHP/@@download/ENCFF198LHP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF429SMO bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJR, ENCFF002EJV, ENCFF807MUK 5292164071 ENCODE Processing Pipeline 4d2f3701ca7651cdd97d0c38d20b4336 https://www.encodeproject.org/files/ENCFF429SMO/@@download/ENCFF429SMO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF594XDV bam unfiltered alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJR, ENCFF002EJV, ENCFF643CGH 6363936623 ENCODE Processing Pipeline aefd517ea6bc0de931576643e47407d0 https://www.encodeproject.org/files/ENCFF594XDV/@@download/ENCFF594XDV.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF735SGD bam unfiltered alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJM, ENCFF002EJP, ENCFF643CGH 6535370707 ENCODE Processing Pipeline 90ebb5dd4869a0670cee867a29302619 https://www.encodeproject.org/files/ENCFF735SGD/@@download/ENCFF735SGD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF281QAQ bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJR, ENCFF002EJV, ENCFF643CGH 5300578472 ENCODE Processing Pipeline 580519a18a41827fd99552625336ec40 https://www.encodeproject.org/files/ENCFF281QAQ/@@download/ENCFF281QAQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF246BAG bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJM, ENCFF002EJP, ENCFF643CGH 5596608816 ENCODE Processing Pipeline cda726874ccb2ce3e12e534c6d84bd8e https://www.encodeproject.org/files/ENCFF246BAG/@@download/ENCFF246BAG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF791VLR bigWig signal p-value ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF246BAG, ENCFF419UIG 1598568032 ENCODE Processing Pipeline 289e645778c8ddff5d95152190aa7968 https://www.encodeproject.org/files/ENCFF791VLR/@@download/ENCFF791VLR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF340SBA bigWig signal p-value ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF281QAQ, ENCFF419UIG 1165399203 ENCODE Processing Pipeline 81b556171e0003d6859459a6249c42ab https://www.encodeproject.org/files/ENCFF340SBA/@@download/ENCFF340SBA.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF914AJD bigWig signal p-value ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF246BAG, ENCFF281QAQ, ENCFF419UIG 2160145324 ENCODE Processing Pipeline 722b764a739f1f6241ca7e4021947f85 https://www.encodeproject.org/files/ENCFF914AJD/@@download/ENCFF914AJD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF024OKZ bigWig fold change over control ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF281QAQ, ENCFF419UIG 1190216089 ENCODE Processing Pipeline ea15b69752e1a33d20e08241e32d7ded https://www.encodeproject.org/files/ENCFF024OKZ/@@download/ENCFF024OKZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF402GLS bigWig fold change over control ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF246BAG, ENCFF419UIG 1646214141 ENCODE Processing Pipeline d5d8a1c2e27d30573ccd078bebe23c46 https://www.encodeproject.org/files/ENCFF402GLS/@@download/ENCFF402GLS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF361NMV bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF246BAG, ENCFF419UIG 6174017 ENCODE Processing Pipeline efc66baff5bf1ed1df83a8923ddf9bdb https://www.encodeproject.org/files/ENCFF361NMV/@@download/ENCFF361NMV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF539BSO bigWig fold change over control ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF246BAG, ENCFF281QAQ, ENCFF419UIG 2199157408 ENCODE Processing Pipeline d817a308b1e17b18e11b8df934c7bec4 https://www.encodeproject.org/files/ENCFF539BSO/@@download/ENCFF539BSO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF731RJG bed narrowPeak conservative idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF361NMV, ENCFF419RSJ, ENCFF566ODC, ENCFF672RWD 124090 ENCODE Processing Pipeline 7f9c5e08077d83b95ffdc98e25e65b1f https://www.encodeproject.org/files/ENCFF731RJG/@@download/ENCFF731RJG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF566ODC bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF246BAG, ENCFF281QAQ, ENCFF419UIG 7212696 ENCODE Processing Pipeline 0d1abd6cc8b851345a7e85c6c982a5ec https://www.encodeproject.org/files/ENCFF566ODC/@@download/ENCFF566ODC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF494SVU bigBed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF361NMV 11496267 ENCODE Processing Pipeline dc8794e95315f5740ba7348e6ecbadfb https://www.encodeproject.org/files/ENCFF494SVU/@@download/ENCFF494SVU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF024DUT bigBed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF672RWD 11417186 ENCODE Processing Pipeline 136645e65c8fd6ff73aabc12e5574294 https://www.encodeproject.org/files/ENCFF024DUT/@@download/ENCFF024DUT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF715CZQ bigBed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF566ODC 11552701 ENCODE Processing Pipeline c3ab1629da8cc6797b7b5bafefb4aea8 https://www.encodeproject.org/files/ENCFF715CZQ/@@download/ENCFF715CZQ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF672RWD bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF281QAQ, ENCFF419UIG 5634912 ENCODE Processing Pipeline 6be30fe75d4b338e73e9823900778e1c https://www.encodeproject.org/files/ENCFF672RWD/@@download/ENCFF672RWD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF630YVF bigBed narrowPeak conservative idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF731RJG 271668 ENCODE Processing Pipeline 50260f8d5bcae18952f5a331f8afb2e4 https://www.encodeproject.org/files/ENCFF630YVF/@@download/ENCFF630YVF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF374AUE bigBed narrowPeak optimal idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF415SIS 293230 ENCODE Processing Pipeline a0282ec6f93fb4a1b3809df7e356fc5c https://www.encodeproject.org/files/ENCFF374AUE/@@download/ENCFF374AUE.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF415SIS bed narrowPeak optimal idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF361NMV, ENCFF419RSJ, ENCFF566ODC, ENCFF672RWD 139818 ENCODE Processing Pipeline 90be6f4864bb1f196387d7960569e88d https://www.encodeproject.org/files/ENCFF415SIS/@@download/ENCFF415SIS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF431JNO bigWig signal p-value ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF198LHP, ENCFF321TUP, ENCFF806YIH 1495373009 ENCODE Processing Pipeline ed0e45a751abb36632a7c710456e8aa5 https://www.encodeproject.org/files/ENCFF431JNO/@@download/ENCFF431JNO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF130XTI bigWig fold change over control ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF198LHP, ENCFF321TUP, ENCFF806YIH 1642942885 ENCODE Processing Pipeline 7377764c93a3e95ea4b7f45544feab3b https://www.encodeproject.org/files/ENCFF130XTI/@@download/ENCFF130XTI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF655BVT bigWig signal p-value ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF429SMO, ENCFF806YIH 1165290826 ENCODE Processing Pipeline 8cbe36e1302a9327c583338153bf3458 https://www.encodeproject.org/files/ENCFF655BVT/@@download/ENCFF655BVT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF419DVD bigWig signal p-value ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF198LHP, ENCFF321TUP, ENCFF429SMO, ENCFF806YIH 2169518882 ENCODE Processing Pipeline 463c1cc6cf3709d5a996e36579f496e0 https://www.encodeproject.org/files/ENCFF419DVD/@@download/ENCFF419DVD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF949WZI bigWig fold change over control ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF198LHP, ENCFF321TUP, ENCFF429SMO, ENCFF806YIH 2208086594 ENCODE Processing Pipeline 8f47221862e2d73562aa4bb6ad348a1d https://www.encodeproject.org/files/ENCFF949WZI/@@download/ENCFF949WZI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF087DBS bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF198LHP, ENCFF321TUP, ENCFF806YIH 6182514 ENCODE Processing Pipeline 62aaafec07ac3455da4816526b90bfdb https://www.encodeproject.org/files/ENCFF087DBS/@@download/ENCFF087DBS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF194MTJ bed narrowPeak conservative idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF087DBS, ENCFF088LGL, ENCFF279PWU 124510 ENCODE Processing Pipeline 109f60b7469786e6451cc09b76470699 https://www.encodeproject.org/files/ENCFF194MTJ/@@download/ENCFF194MTJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF811ZOM bigBed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF088LGL 11542544 ENCODE Processing Pipeline bc715781512fa972b6fc9dc88f101098 https://www.encodeproject.org/files/ENCFF811ZOM/@@download/ENCFF811ZOM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF700BVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF194MTJ 269902 ENCODE Processing Pipeline b7c46c327935d2e69a2e9b2aa85ea90c https://www.encodeproject.org/files/ENCFF700BVZ/@@download/ENCFF700BVZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF827MDC bed narrowPeak optimal idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF087DBS, ENCFF088LGL, ENCFF279PWU 140359 ENCODE Processing Pipeline ace047c77db01927a4f200d44940abe0 https://www.encodeproject.org/files/ENCFF827MDC/@@download/ENCFF827MDC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF948JFR bigWig fold change over control ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF429SMO, ENCFF806YIH 1188371459 ENCODE Processing Pipeline 3565c2c9474f76cac5af95e6b4935ada https://www.encodeproject.org/files/ENCFF948JFR/@@download/ENCFF948JFR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF088LGL bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF198LHP, ENCFF321TUP, ENCFF429SMO, ENCFF806YIH 7210339 ENCODE Processing Pipeline 45fb3b74d6eac75ef825d564bb9b5eb2 https://www.encodeproject.org/files/ENCFF088LGL/@@download/ENCFF088LGL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF392IUF bigBed narrowPeak optimal idr thresholded peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF827MDC 291576 ENCODE Processing Pipeline f110f7626ff0758310bf0e2aa1b803d8 https://www.encodeproject.org/files/ENCFF392IUF/@@download/ENCFF392IUF.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF279PWU bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF429SMO, ENCFF806YIH 5672958 ENCODE Processing Pipeline 115f223bb58bc67e19dfb65b3eef95eb https://www.encodeproject.org/files/ENCFF279PWU/@@download/ENCFF279PWU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF786QXD bigBed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF087DBS 11490337 ENCODE Processing Pipeline be5eb9631c2b58431f7f7202fe782b17 https://www.encodeproject.org/files/ENCFF786QXD/@@download/ENCFF786QXD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF364XTC bigBed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 ENCFF279PWU 11367495 ENCODE Processing Pipeline 4d8939bd93d805b2d2327e832b6245cd https://www.encodeproject.org/files/ENCFF364XTC/@@download/ENCFF364XTC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF899JOK fastq reads ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF878ZEU 2705732744 Michael Snyder, Stanford a9ea0a82177746ba1e8e9420d36f2caf SRA:SRR5112049 https://www.encodeproject.org/files/ENCFF899JOK/@@download/ENCFF899JOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF220MRD fastq reads ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF498UTM 1483418733 Michael Snyder, Stanford 53a79c6e956fe125a56b94a2148b390e SRA:SRR5112048 https://www.encodeproject.org/files/ENCFF220MRD/@@download/ENCFF220MRD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF498UTM fastq reads ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF220MRD 1500839732 Michael Snyder, Stanford eb94c849a3e36d69340ab2329cec9ff5 SRA:SRR5112048 https://www.encodeproject.org/files/ENCFF498UTM/@@download/ENCFF498UTM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF878ZEU fastq reads ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF899JOK 2778018899 Michael Snyder, Stanford eab4a5b725a0af6ab8c79ad6a9c0317e SRA:SRR5112049 https://www.encodeproject.org/files/ENCFF878ZEU/@@download/ENCFF878ZEU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF871KAX bam unfiltered alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF220MRD, ENCFF498UTM, ENCFF807MUK 3442416142 ENCODE Processing Pipeline 2305731cf823398d0580d4cb4e273e4c https://www.encodeproject.org/files/ENCFF871KAX/@@download/ENCFF871KAX.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF014OEH bam unfiltered alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF220MRD, ENCFF498UTM, ENCFF643CGH 3446606913 ENCODE Processing Pipeline 99c9eedb5a521a9d3834288d644c4a3c https://www.encodeproject.org/files/ENCFF014OEH/@@download/ENCFF014OEH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF425UGM bam unfiltered alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF878ZEU, ENCFF899JOK 6040613055 ENCODE Processing Pipeline 27e0849bb87a24cf8588e5026c7db4d6 https://www.encodeproject.org/files/ENCFF425UGM/@@download/ENCFF425UGM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF987CVS bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF220MRD, ENCFF498UTM, ENCFF807MUK 3038821813 ENCODE Processing Pipeline d4ec0076401e1b844a296cee09bd8471 https://www.encodeproject.org/files/ENCFF987CVS/@@download/ENCFF987CVS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF700AOV bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF220MRD, ENCFF498UTM, ENCFF643CGH 3040264100 ENCODE Processing Pipeline cc88bece909250d0dd54141d0c72e9f3 https://www.encodeproject.org/files/ENCFF700AOV/@@download/ENCFF700AOV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF953PHK bam unfiltered alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF878ZEU, ENCFF899JOK 6047073870 ENCODE Processing Pipeline c767391dbcf1ac639d22157d2c34331b https://www.encodeproject.org/files/ENCFF953PHK/@@download/ENCFF953PHK.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF742YPV bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF878ZEU, ENCFF899JOK 5248309703 ENCODE Processing Pipeline 356cc923e93b919a11dd37338768c77b https://www.encodeproject.org/files/ENCFF742YPV/@@download/ENCFF742YPV.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF424CSY bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF878ZEU, ENCFF899JOK 5249848816 ENCODE Processing Pipeline 8bb28558b53fb91da16a89f05e8f92ff https://www.encodeproject.org/files/ENCFF424CSY/@@download/ENCFF424CSY.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF686JPY bigWig signal p-value ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF987CVS 1221912205 ENCODE Processing Pipeline af099f2914d5f8172db3b9b1a2f48351 https://www.encodeproject.org/files/ENCFF686JPY/@@download/ENCFF686JPY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF416DSD bigWig signal p-value ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF742YPV 1442173614 ENCODE Processing Pipeline be50bcd63b92d20389f82f1d8d16837f https://www.encodeproject.org/files/ENCFF416DSD/@@download/ENCFF416DSD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF981OKW bigWig signal p-value ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF742YPV, ENCFF987CVS 1518910375 ENCODE Processing Pipeline 39ea9c90dc6f388465eb1cd0828f6550 https://www.encodeproject.org/files/ENCFF981OKW/@@download/ENCFF981OKW.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF297XGG bigWig fold change over control ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF742YPV 1545728086 ENCODE Processing Pipeline 443e47f34430f2de632e12250f09b3ae https://www.encodeproject.org/files/ENCFF297XGG/@@download/ENCFF297XGG.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF499MYY bigWig fold change over control ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF987CVS 1190249983 ENCODE Processing Pipeline ace911e5b1afc2689b999346920d25f9 https://www.encodeproject.org/files/ENCFF499MYY/@@download/ENCFF499MYY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF263GRB bigWig fold change over control ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF742YPV, ENCFF987CVS 1949752329 ENCODE Processing Pipeline 3cf4746719422a831d8febf26cb63ca6 https://www.encodeproject.org/files/ENCFF263GRB/@@download/ENCFF263GRB.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF697WQI bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF742YPV 6924873 ENCODE Processing Pipeline 5d1b436cfc7345873306b1412da9e649 https://www.encodeproject.org/files/ENCFF697WQI/@@download/ENCFF697WQI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF775DQT bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF987CVS 6439557 ENCODE Processing Pipeline 332de8d7a5d2543cf08b945f2c294da7 https://www.encodeproject.org/files/ENCFF775DQT/@@download/ENCFF775DQT.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF051ZGH bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF742YPV, ENCFF987CVS 7167363 ENCODE Processing Pipeline d7ef70451f440c412067a41ca2459f8f https://www.encodeproject.org/files/ENCFF051ZGH/@@download/ENCFF051ZGH.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF608XMU bigBed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF697WQI 13351831 ENCODE Processing Pipeline f350b699683c79491b86333ab00e4273 https://www.encodeproject.org/files/ENCFF608XMU/@@download/ENCFF608XMU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF180SPT bigBed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF775DQT 11361739 ENCODE Processing Pipeline 863b27d65d68c5911e7fa6cb337ab203 https://www.encodeproject.org/files/ENCFF180SPT/@@download/ENCFF180SPT.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF319HXP bed narrowPeak conservative idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF051ZGH, ENCFF697WQI, ENCFF775DQT 170236 ENCODE Processing Pipeline 506b92abff7e47d042917b4fba1dee6b https://www.encodeproject.org/files/ENCFF319HXP/@@download/ENCFF319HXP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF289TBS bigBed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF051ZGH 13205027 ENCODE Processing Pipeline 38f2304a00f02ff7e4427b29e49dd31e https://www.encodeproject.org/files/ENCFF289TBS/@@download/ENCFF289TBS.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF413MWI bigBed narrowPeak conservative idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF319HXP 402374 ENCODE Processing Pipeline 3ae1d7baec79775b2fb8a9216916885c https://www.encodeproject.org/files/ENCFF413MWI/@@download/ENCFF413MWI.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF292GRY bed narrowPeak optimal idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF051ZGH, ENCFF697WQI, ENCFF775DQT 232399 ENCODE Processing Pipeline 2d6ca0eeae1f8122b6349ecfdde61084 https://www.encodeproject.org/files/ENCFF292GRY/@@download/ENCFF292GRY.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF863LJY bigBed narrowPeak optimal idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF292GRY 510730 ENCODE Processing Pipeline 2621d0109bb1713764aefd92cd9e6094 https://www.encodeproject.org/files/ENCFF863LJY/@@download/ENCFF863LJY.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF096KGU bigWig signal p-value ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF700AOV 1258886046 ENCODE Processing Pipeline 0d7ae3ef912a646e5fb2fcbf26db28be https://www.encodeproject.org/files/ENCFF096KGU/@@download/ENCFF096KGU.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF340WKM bigWig signal p-value ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424CSY 1520422869 ENCODE Processing Pipeline 45811be22e151e9d82b39dc7905cd3dc https://www.encodeproject.org/files/ENCFF340WKM/@@download/ENCFF340WKM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF273LEJ bigWig signal p-value ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424CSY, ENCFF700AOV 1461132855 ENCODE Processing Pipeline 966e00e793f8f5d1a13b4711f4cd7d48 https://www.encodeproject.org/files/ENCFF273LEJ/@@download/ENCFF273LEJ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF046VOY bigWig fold change over control ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424CSY 1532656720 ENCODE Processing Pipeline 01fe9de12692217c3179c6556fc14ada https://www.encodeproject.org/files/ENCFF046VOY/@@download/ENCFF046VOY.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF658XHU bigWig fold change over control ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF700AOV 1200907797 ENCODE Processing Pipeline 074f75748bc268cca268678124ecfcae https://www.encodeproject.org/files/ENCFF658XHU/@@download/ENCFF658XHU.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF951KMM bigWig fold change over control ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424CSY, ENCFF700AOV 1939827654 ENCODE Processing Pipeline 12dafe9f611ad54031777f940ad5c903 https://www.encodeproject.org/files/ENCFF951KMM/@@download/ENCFF951KMM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF858EZZ bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424CSY 6813260 ENCODE Processing Pipeline 5625d07d7de0582d8fe32d8a5967e099 https://www.encodeproject.org/files/ENCFF858EZZ/@@download/ENCFF858EZZ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF469JWA bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF424CSY, ENCFF700AOV 7116814 ENCODE Processing Pipeline 54440196d16a8df9b528f7fa5e785cb4 https://www.encodeproject.org/files/ENCFF469JWA/@@download/ENCFF469JWA.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF067PYQ bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF700AOV 6274506 ENCODE Processing Pipeline 6b0f8d4ffc6989a9e57f7ce98e4d7d56 https://www.encodeproject.org/files/ENCFF067PYQ/@@download/ENCFF067PYQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF261RNZ bigBed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF067PYQ 11342070 ENCODE Processing Pipeline 534a0974b54ac3e7c0beb56056c2aa05 https://www.encodeproject.org/files/ENCFF261RNZ/@@download/ENCFF261RNZ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF913AFC bigBed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF858EZZ 13357909 ENCODE Processing Pipeline 7368e53ed56603a8c11d148602273c09 https://www.encodeproject.org/files/ENCFF913AFC/@@download/ENCFF913AFC.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF860DSJ bed narrowPeak optimal idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF067PYQ, ENCFF419RSJ, ENCFF469JWA, ENCFF858EZZ 234620 ENCODE Processing Pipeline db70d519c86e4f7b82cc239a7abb5162 https://www.encodeproject.org/files/ENCFF860DSJ/@@download/ENCFF860DSJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF743XSR bigBed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF469JWA 13227517 ENCODE Processing Pipeline c24b5c62b31cf6ceff173dbcfe1e3788 https://www.encodeproject.org/files/ENCFF743XSR/@@download/ENCFF743XSR.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF716OCH bigBed narrowPeak conservative idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF110XUA 404393 ENCODE Processing Pipeline 7f5968757c05a6cae5a92b63f36b97c5 https://www.encodeproject.org/files/ENCFF716OCH/@@download/ENCFF716OCH.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF110XUA bed narrowPeak conservative idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF067PYQ, ENCFF419RSJ, ENCFF469JWA, ENCFF858EZZ 171115 ENCODE Processing Pipeline fcdf3fd8aa796350fadf827477e35796 https://www.encodeproject.org/files/ENCFF110XUA/@@download/ENCFF110XUA.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF516FIG bigBed narrowPeak optimal idr thresholded peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF860DSJ 514058 ENCODE Processing Pipeline 008b9f3a2ee6c3d7df1933cc1adbaf42 https://www.encodeproject.org/files/ENCFF516FIG/@@download/ENCFF516FIG.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF951ZXP fastq reads ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF307XRL 1709470450 Michael Snyder, Stanford 6d28663c6ef966310680125fc1a748c6 SRA:SRR6214358 https://www.encodeproject.org/files/ENCFF951ZXP/@@download/ENCFF951ZXP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF043SEF fastq reads ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF780EID 2358692428 Michael Snyder, Stanford ba60ffae0df9c5481be352e2c27cc6ac SRA:SRR6214359 https://www.encodeproject.org/files/ENCFF043SEF/@@download/ENCFF043SEF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF307XRL fastq reads ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF951ZXP 1633706269 Michael Snyder, Stanford 7ad40c4c7f3b98e553cdcbe1da407ebe SRA:SRR6214358 https://www.encodeproject.org/files/ENCFF307XRL/@@download/ENCFF307XRL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF780EID fastq reads ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF043SEF 2342252041 Michael Snyder, Stanford 795d0fddd2575c8e7fc1a88a568ceb6c SRA:SRR6214359 https://www.encodeproject.org/files/ENCFF780EID/@@download/ENCFF780EID.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF085AZW bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF307XRL, ENCFF807MUK, ENCFF951ZXP 2627627872 ENCODE Processing Pipeline 895dfe0ff5c512cbe5f4e612ce2b2a87 https://www.encodeproject.org/files/ENCFF085AZW/@@download/ENCFF085AZW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF295OIX bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF043SEF, ENCFF780EID, ENCFF807MUK 3837919076 ENCODE Processing Pipeline c8d8309740ffeb65815f1c649ff74fdc https://www.encodeproject.org/files/ENCFF295OIX/@@download/ENCFF295OIX.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF402HVB bigWig signal p-value ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF295OIX 1074357387 ENCODE Processing Pipeline f68be3e801770157e26a02e60a2bc215 https://www.encodeproject.org/files/ENCFF402HVB/@@download/ENCFF402HVB.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF708ZKW bigWig signal p-value ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF085AZW, ENCFF581ZJL 980536299 ENCODE Processing Pipeline 97ffd3562f5d169c6892ff784cc2d9f7 https://www.encodeproject.org/files/ENCFF708ZKW/@@download/ENCFF708ZKW.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF779GBL bigWig signal p-value ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF085AZW, ENCFF295OIX, ENCFF581ZJL 1607905239 ENCODE Processing Pipeline 6c7d6c6eaf9722ee92a0c60bb6aa6ced https://www.encodeproject.org/files/ENCFF779GBL/@@download/ENCFF779GBL.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF258YFT bigWig fold change over control ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF085AZW, ENCFF581ZJL 875163369 ENCODE Processing Pipeline e1c1526f8cf9d0abc98b61268e7b4930 https://www.encodeproject.org/files/ENCFF258YFT/@@download/ENCFF258YFT.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF442OVV bigWig fold change over control ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF295OIX 972194571 ENCODE Processing Pipeline b9c0cdcad4e5159b185ae8f810fc2d9d https://www.encodeproject.org/files/ENCFF442OVV/@@download/ENCFF442OVV.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF454KQY bigWig fold change over control ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF085AZW, ENCFF295OIX, ENCFF581ZJL 1801997965 ENCODE Processing Pipeline b943e537f834c305778846f49a147a5d https://www.encodeproject.org/files/ENCFF454KQY/@@download/ENCFF454KQY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF759MWN bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF085AZW, ENCFF581ZJL 6464456 ENCODE Processing Pipeline 3e6b7da4081d167ce8628755eb7f42ae https://www.encodeproject.org/files/ENCFF759MWN/@@download/ENCFF759MWN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF513RYS bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF295OIX 6709320 ENCODE Processing Pipeline f9c73cee15733bf6764b14d01bb16516 https://www.encodeproject.org/files/ENCFF513RYS/@@download/ENCFF513RYS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF826QEY bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF085AZW, ENCFF295OIX, ENCFF581ZJL 7152191 ENCODE Processing Pipeline 93a0fdf61a4e8b49dfc4e0433fdf04ae https://www.encodeproject.org/files/ENCFF826QEY/@@download/ENCFF826QEY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF024MYW bigBed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF759MWN 13589054 ENCODE Processing Pipeline 2066341dd16abb17728d907ea7ab7b50 https://www.encodeproject.org/files/ENCFF024MYW/@@download/ENCFF024MYW.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF787FOY bigBed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF513RYS 13925550 ENCODE Processing Pipeline 2dd8444468e0743377f4670e00a8a9e7 https://www.encodeproject.org/files/ENCFF787FOY/@@download/ENCFF787FOY.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF114FHE bigBed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF826QEY 13944037 ENCODE Processing Pipeline 77c9b62b781fb8486209e9343484dbcc https://www.encodeproject.org/files/ENCFF114FHE/@@download/ENCFF114FHE.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF718IGX bam unfiltered alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF043SEF, ENCFF643CGH, ENCFF780EID 4917252641 ENCODE Processing Pipeline d67ae4af4f11cc29f318caf948e6af88 https://www.encodeproject.org/files/ENCFF718IGX/@@download/ENCFF718IGX.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF719FYJ bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF043SEF, ENCFF643CGH, ENCFF780EID 3840034908 ENCODE Processing Pipeline b6d8eee258aff2aa574291736e2ece0d https://www.encodeproject.org/files/ENCFF719FYJ/@@download/ENCFF719FYJ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF123YZF bam unfiltered alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF307XRL, ENCFF643CGH, ENCFF951ZXP 3651831715 ENCODE Processing Pipeline 85c0af02d8127b4749b15486c3a91a91 https://www.encodeproject.org/files/ENCFF123YZF/@@download/ENCFF123YZF.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF883MZR bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF307XRL, ENCFF643CGH, ENCFF951ZXP 2628528434 ENCODE Processing Pipeline f605018051189139eed2d8361ed79032 https://www.encodeproject.org/files/ENCFF883MZR/@@download/ENCFF883MZR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF670UKL bigWig signal p-value ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF883MZR, ENCFF910IKB 881562249 ENCODE Processing Pipeline a5f7a33f8172420807b1de880e2a2d22 https://www.encodeproject.org/files/ENCFF670UKL/@@download/ENCFF670UKL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF450LDD bigWig signal p-value ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF227IZS, ENCFF719FYJ 883705933 ENCODE Processing Pipeline 48e4a1042accd7c5f3a43f0688ce0e7a https://www.encodeproject.org/files/ENCFF450LDD/@@download/ENCFF450LDD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF421GGZ bigWig signal p-value ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF227IZS, ENCFF719FYJ, ENCFF883MZR, ENCFF910IKB 1629523531 ENCODE Processing Pipeline 26c565735ef0672fdd473b45795b4af2 https://www.encodeproject.org/files/ENCFF421GGZ/@@download/ENCFF421GGZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF108ANM bigWig fold change over control ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF227IZS, ENCFF719FYJ 973653286 ENCODE Processing Pipeline 0a719e68692b203abdf1bd5c815b8d18 https://www.encodeproject.org/files/ENCFF108ANM/@@download/ENCFF108ANM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF820RPX bigWig fold change over control ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF883MZR, ENCFF910IKB 875759613 ENCODE Processing Pipeline 4c32e22ace39007a6d5728e107061fd4 https://www.encodeproject.org/files/ENCFF820RPX/@@download/ENCFF820RPX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF749BWV bigWig fold change over control ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF227IZS, ENCFF719FYJ, ENCFF883MZR, ENCFF910IKB 1803425286 ENCODE Processing Pipeline 642f70a9672eade495bd84ee5cac5444 https://www.encodeproject.org/files/ENCFF749BWV/@@download/ENCFF749BWV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF113CTE bigBed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF129HSC 11629237 ENCODE Processing Pipeline 7504caf02f0aadf9c4ff621de2fa8afb https://www.encodeproject.org/files/ENCFF113CTE/@@download/ENCFF113CTE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF803FHN bed narrowPeak optimal idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF129HSC, ENCFF419RSJ, ENCFF764SAO, ENCFF784QTQ 809457 ENCODE Processing Pipeline 7add0259e2d935a4afcb4e8316e0e26c https://www.encodeproject.org/files/ENCFF803FHN/@@download/ENCFF803FHN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF129HSC bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF227IZS, ENCFF719FYJ 6594131 ENCODE Processing Pipeline 632ffc386ef26520be2e9ae1d6896a44 https://www.encodeproject.org/files/ENCFF129HSC/@@download/ENCFF129HSC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF514CKE bigBed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF764SAO 11382497 ENCODE Processing Pipeline 5bc3d2119bef9b97c7b29e0023163ca2 https://www.encodeproject.org/files/ENCFF514CKE/@@download/ENCFF514CKE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF831DRR bigBed narrowPeak conservative idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF207FUE 1072135 ENCODE Processing Pipeline c0ac864b289e9645932645fb9fd394a7 https://www.encodeproject.org/files/ENCFF831DRR/@@download/ENCFF831DRR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF764SAO bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF883MZR, ENCFF910IKB 6314480 ENCODE Processing Pipeline 814ad53ca1c348d9a2eda0056f70a6f5 https://www.encodeproject.org/files/ENCFF764SAO/@@download/ENCFF764SAO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF856ICQ bigBed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF784QTQ 13933924 ENCODE Processing Pipeline 09c4d18044cdd39bda1e03ee551bc67a https://www.encodeproject.org/files/ENCFF856ICQ/@@download/ENCFF856ICQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF784QTQ bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF227IZS, ENCFF719FYJ, ENCFF883MZR, ENCFF910IKB 7101045 ENCODE Processing Pipeline 5d97f7d51fd84b5da95f986896fca49c https://www.encodeproject.org/files/ENCFF784QTQ/@@download/ENCFF784QTQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF207FUE bed narrowPeak conservative idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF129HSC, ENCFF419RSJ, ENCFF764SAO, ENCFF784QTQ 577300 ENCODE Processing Pipeline 47ea47bf6e2b1fcd449000357112e5d7 https://www.encodeproject.org/files/ENCFF207FUE/@@download/ENCFF207FUE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF911YYM bigBed narrowPeak optimal idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF803FHN 1378947 ENCODE Processing Pipeline b65acd49b4a522789abcd2707f708e82 https://www.encodeproject.org/files/ENCFF911YYM/@@download/ENCFF911YYM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF251HST bam unfiltered alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF307XRL, ENCFF807MUK, ENCFF951ZXP 3647925747 ENCODE Processing Pipeline 2a70169db6fa023b6ffa7e85d3ed0166 https://www.encodeproject.org/files/ENCFF251HST/@@download/ENCFF251HST.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF448GXI bam unfiltered alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF043SEF, ENCFF780EID, ENCFF807MUK 4913911356 ENCODE Processing Pipeline 3539b4426b4e8b1603013bc43aa934ab https://www.encodeproject.org/files/ENCFF448GXI/@@download/ENCFF448GXI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF413RJJ bigBed narrowPeak conservative idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF525YRJ 998251 ENCODE Processing Pipeline 1b8692f086c7e94f20060c9ee211570e https://www.encodeproject.org/files/ENCFF413RJJ/@@download/ENCFF413RJJ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF525YRJ bed narrowPeak conservative idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF513RYS, ENCFF759MWN, ENCFF826QEY 529867 ENCODE Processing Pipeline 02ebd3ea34b858dd25859bc0abde0ac2 https://www.encodeproject.org/files/ENCFF525YRJ/@@download/ENCFF525YRJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF119DRS bigBed narrowPeak optimal idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF968KBN 1240833 ENCODE Processing Pipeline a7f56d9e630e9afe9f639a953481f471 https://www.encodeproject.org/files/ENCFF119DRS/@@download/ENCFF119DRS.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF968KBN bed narrowPeak optimal idr thresholded peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF513RYS, ENCFF759MWN, ENCFF826QEY 723708 ENCODE Processing Pipeline 4aad24f6ab0ecc423ff32a4a1989e087 https://www.encodeproject.org/files/ENCFF968KBN/@@download/ENCFF968KBN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF338YPL fastq reads ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF385MZK 3279677495 Michael Snyder, Stanford 0c0fea763cdb01d4e2bdddefae7c15b2 SRA:SRR6212633 https://www.encodeproject.org/files/ENCFF338YPL/@@download/ENCFF338YPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF465EOJ fastq reads ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF903BWT 2899675933 Michael Snyder, Stanford 3eb46f82fc70a21598d26f67f3f0b9fb SRA:SRR6212634 https://www.encodeproject.org/files/ENCFF465EOJ/@@download/ENCFF465EOJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF385MZK fastq reads ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF338YPL 3240705110 Michael Snyder, Stanford 228e366bd602ee61b84d109ee42ec76b SRA:SRR6212633 https://www.encodeproject.org/files/ENCFF385MZK/@@download/ENCFF385MZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF903BWT fastq reads ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF465EOJ 2858296383 Michael Snyder, Stanford 119d637c0142cb68d78aa9c026096003 SRA:SRR6212634 https://www.encodeproject.org/files/ENCFF903BWT/@@download/ENCFF903BWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF226EXK bam unfiltered alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF465EOJ, ENCFF807MUK, ENCFF903BWT 5894300324 ENCODE Processing Pipeline c316a90f5c5082dd300e9ec54732b8cd https://www.encodeproject.org/files/ENCFF226EXK/@@download/ENCFF226EXK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF360QLH bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF465EOJ, ENCFF807MUK, ENCFF903BWT 4918990012 ENCODE Processing Pipeline 5b388a13b273f425022d75f6d29c6e7b https://www.encodeproject.org/files/ENCFF360QLH/@@download/ENCFF360QLH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF397HVF bam unfiltered alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF465EOJ, ENCFF643CGH, ENCFF903BWT 5903498507 ENCODE Processing Pipeline a6249c2701593cfeebffa73036eff186 https://www.encodeproject.org/files/ENCFF397HVF/@@download/ENCFF397HVF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF606HTE bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF465EOJ, ENCFF643CGH, ENCFF903BWT 4920822240 ENCODE Processing Pipeline b3161a03665534cfaf7570b35f8bee28 https://www.encodeproject.org/files/ENCFF606HTE/@@download/ENCFF606HTE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF404DRR bam unfiltered alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF338YPL, ENCFF385MZK, ENCFF643CGH 6619418046 ENCODE Processing Pipeline bbe8989618075c13886324b08cc6756a https://www.encodeproject.org/files/ENCFF404DRR/@@download/ENCFF404DRR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF970EJZ bam unfiltered alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF338YPL, ENCFF385MZK, ENCFF807MUK 6608642908 ENCODE Processing Pipeline d3a02bec64c827f6016dcd8f3ed63212 https://www.encodeproject.org/files/ENCFF970EJZ/@@download/ENCFF970EJZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF890KOK bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF338YPL, ENCFF385MZK, ENCFF807MUK 5493729111 ENCODE Processing Pipeline 7e72a0228c65f28317ada5e237a2d628 https://www.encodeproject.org/files/ENCFF890KOK/@@download/ENCFF890KOK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF663CXE bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF338YPL, ENCFF385MZK, ENCFF643CGH 5495864408 ENCODE Processing Pipeline 137b7561fc78db9899559a18c7251946 https://www.encodeproject.org/files/ENCFF663CXE/@@download/ENCFF663CXE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF468FWX bigWig signal p-value ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890KOK 1535454018 ENCODE Processing Pipeline 44843ff97a6e3c900f97785e6cf9d230 https://www.encodeproject.org/files/ENCFF468FWX/@@download/ENCFF468FWX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF667VNZ bigWig signal p-value ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF360QLH 1203542758 ENCODE Processing Pipeline 36a3dfe340bb60ae81fc29f5f10d7683 https://www.encodeproject.org/files/ENCFF667VNZ/@@download/ENCFF667VNZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF326KDO bigWig signal p-value ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF360QLH, ENCFF890KOK 2006379709 ENCODE Processing Pipeline aa50ad52547145d93fba24383ff699b3 https://www.encodeproject.org/files/ENCFF326KDO/@@download/ENCFF326KDO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF197PIL bigWig fold change over control ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890KOK 1528440062 ENCODE Processing Pipeline ba976ff70603900243d02c72be4efc43 https://www.encodeproject.org/files/ENCFF197PIL/@@download/ENCFF197PIL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF669ZYM bigWig fold change over control ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF360QLH 1426988434 ENCODE Processing Pipeline b9345711a9807d4c1ec5561f4e4b110a https://www.encodeproject.org/files/ENCFF669ZYM/@@download/ENCFF669ZYM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF316KPE bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890KOK 6643628 ENCODE Processing Pipeline dd3b2937d29ed7e9938d9829735fe39d https://www.encodeproject.org/files/ENCFF316KPE/@@download/ENCFF316KPE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF109CLV bigWig fold change over control ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF360QLH, ENCFF890KOK 2060470911 ENCODE Processing Pipeline 0749fa711641e86449ee2bc2d4b98460 https://www.encodeproject.org/files/ENCFF109CLV/@@download/ENCFF109CLV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF363JWT bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF360QLH 6609966 ENCODE Processing Pipeline 7d936d716a4f7a9c64c59998db5a6280 https://www.encodeproject.org/files/ENCFF363JWT/@@download/ENCFF363JWT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF018BNH bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF360QLH, ENCFF890KOK 7112747 ENCODE Processing Pipeline 519d8aebd29c16f1544d6ebe71bf2554 https://www.encodeproject.org/files/ENCFF018BNH/@@download/ENCFF018BNH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF943LDC bed narrowPeak optimal idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF018BNH, ENCFF316KPE, ENCFF363JWT 52773 ENCODE Processing Pipeline 09186c80f53290b88a7a49a20eb0fa3e https://www.encodeproject.org/files/ENCFF943LDC/@@download/ENCFF943LDC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF768DVE bigBed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF018BNH 10874739 ENCODE Processing Pipeline 736defdfa3eb6ae1352df7cc960942f1 https://www.encodeproject.org/files/ENCFF768DVE/@@download/ENCFF768DVE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF957XOH bigBed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF363JWT 11112082 ENCODE Processing Pipeline 83fb82300b3a75f5d9cda6e6ae8724bb https://www.encodeproject.org/files/ENCFF957XOH/@@download/ENCFF957XOH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF711DTZ bed narrowPeak conservative idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF018BNH, ENCFF316KPE, ENCFF363JWT 37767 ENCODE Processing Pipeline 55da6c18cb6e15e65d2392c639b5fab4 https://www.encodeproject.org/files/ENCFF711DTZ/@@download/ENCFF711DTZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF427ZRW bigBed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF316KPE 11126211 ENCODE Processing Pipeline c8866e6f1c304bcd4f69342cf6732864 https://www.encodeproject.org/files/ENCFF427ZRW/@@download/ENCFF427ZRW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF520EXU bigBed narrowPeak optimal idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF943LDC 147511 ENCODE Processing Pipeline a6658a1a6e5b66c23059d39244fb86ef https://www.encodeproject.org/files/ENCFF520EXU/@@download/ENCFF520EXU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF297QVV bigBed narrowPeak conservative idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF711DTZ 125008 ENCODE Processing Pipeline 96d6641fe884a76652204d29083018aa https://www.encodeproject.org/files/ENCFF297QVV/@@download/ENCFF297QVV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF533FGW bigWig signal p-value ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF606HTE 1453371321 ENCODE Processing Pipeline a0677e5bb75962ea10a54bd84198957b https://www.encodeproject.org/files/ENCFF533FGW/@@download/ENCFF533FGW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF309IXU bigWig signal p-value ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF606HTE, ENCFF663CXE 1977003145 ENCODE Processing Pipeline d99388aa84d778ee93658d02b11e1873 https://www.encodeproject.org/files/ENCFF309IXU/@@download/ENCFF309IXU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF273UNO bigWig fold change over control ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF663CXE 1513215644 ENCODE Processing Pipeline 22c27f3a6d601d0e8b01ee9db1a7a0b6 https://www.encodeproject.org/files/ENCFF273UNO/@@download/ENCFF273UNO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF745JEA bigWig signal p-value ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF663CXE 1295822460 ENCODE Processing Pipeline 24d2a0a1ba9967b20066fd2c79dba581 https://www.encodeproject.org/files/ENCFF745JEA/@@download/ENCFF745JEA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF329HGT bigWig fold change over control ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF606HTE 1454351260 ENCODE Processing Pipeline 1c60420b5d6fc3a447161c5b8d1b62f9 https://www.encodeproject.org/files/ENCFF329HGT/@@download/ENCFF329HGT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF731PVG bigWig fold change over control ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF606HTE, ENCFF663CXE 2036997734 ENCODE Processing Pipeline f4efae22b0673acb503a60a4041167a3 https://www.encodeproject.org/files/ENCFF731PVG/@@download/ENCFF731PVG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF370BIM bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF606HTE 6612598 ENCODE Processing Pipeline 82aaf7a51f36d6bfebc1bf9f82f118f8 https://www.encodeproject.org/files/ENCFF370BIM/@@download/ENCFF370BIM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF936LYG bigBed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF779OVV 11132945 ENCODE Processing Pipeline 26674b5096995dc2df34e48b572e2d05 https://www.encodeproject.org/files/ENCFF936LYG/@@download/ENCFF936LYG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF779OVV bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF663CXE 6642245 ENCODE Processing Pipeline 0be78d41f5efa27b67d5e63338da509d https://www.encodeproject.org/files/ENCFF779OVV/@@download/ENCFF779OVV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF299NMK bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF606HTE, ENCFF663CXE 7118255 ENCODE Processing Pipeline 43a618a08bdf9003c9c45a50d29b97bd https://www.encodeproject.org/files/ENCFF299NMK/@@download/ENCFF299NMK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF728TRF bigBed narrowPeak conservative idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF894VNK 126491 ENCODE Processing Pipeline 2e3222420559170b2d8a7a1d4e96e973 https://www.encodeproject.org/files/ENCFF728TRF/@@download/ENCFF728TRF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF549IOQ bigBed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF299NMK 10936715 ENCODE Processing Pipeline 5545397b1bb9b7566d7854fa4959eb9e https://www.encodeproject.org/files/ENCFF549IOQ/@@download/ENCFF549IOQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF147VIA bigBed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF370BIM 11124987 ENCODE Processing Pipeline de5a9934c345b9dcb14accff8a7f9537 https://www.encodeproject.org/files/ENCFF147VIA/@@download/ENCFF147VIA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF894VNK bed narrowPeak conservative idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF299NMK, ENCFF370BIM, ENCFF419RSJ, ENCFF779OVV 38005 ENCODE Processing Pipeline 243a301ba9278113f75ee952c13cab37 https://www.encodeproject.org/files/ENCFF894VNK/@@download/ENCFF894VNK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF665NYZ bed narrowPeak optimal idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF299NMK, ENCFF370BIM, ENCFF419RSJ, ENCFF779OVV 51757 ENCODE Processing Pipeline 18d1bcf70751ac31e28e0706c211e5bc https://www.encodeproject.org/files/ENCFF665NYZ/@@download/ENCFF665NYZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF246SOJ bigBed narrowPeak optimal idr thresholded peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF665NYZ 147812 ENCODE Processing Pipeline 106df4fbf1192b3d88f3b8f09b05be54 https://www.encodeproject.org/files/ENCFF246SOJ/@@download/ENCFF246SOJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF970TBB bam unfiltered alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTV, ENCFF002EHV, ENCFF807MUK 8634535843 ENCODE Processing Pipeline 6beaeb3041409d4dd905dac586df628e https://www.encodeproject.org/files/ENCFF970TBB/@@download/ENCFF970TBB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002DTV fastq reads ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHV 4354070322 Michael Snyder, Stanford 7cccec2ea008ad5a3462b0522c630062 SRA:SRR6213009 https://www.encodeproject.org/files/ENCFF002DTV/@@download/ENCFF002DTV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EHT fastq reads ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EHX 2998145790 Michael Snyder, Stanford 1958ab4aa02bfafc3a04f248c504f4d5 SRA:SRR6213010 https://www.encodeproject.org/files/ENCFF002EHT/@@download/ENCFF002EHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EHV fastq reads ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DTV 4214511410 Michael Snyder, Stanford c99da87c6ae791d74cb4e62daf9e48c7 SRA:SRR6213009 https://www.encodeproject.org/files/ENCFF002EHV/@@download/ENCFF002EHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002EHX fastq reads ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHT 2896165158 Michael Snyder, Stanford 3cd145a37bb98c1bfa943a61379c862d SRA:SRR6213010 https://www.encodeproject.org/files/ENCFF002EHX/@@download/ENCFF002EHX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF593DEU bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF002DTV, ENCFF002EHV, ENCFF807MUK 5561461906 ENCODE Processing Pipeline 49fb6b26934800b1ef79d8dc5a38cee3 https://www.encodeproject.org/files/ENCFF593DEU/@@download/ENCFF593DEU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF784VKF fastq reads ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 2 ENCFF617KOF 2295106889 Michael Snyder, Stanford 0099afab0231f4a189e2a0fe3796a32e SRA:SRR6213008 https://www.encodeproject.org/files/ENCFF784VKF/@@download/ENCFF784VKF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF617KOF fastq reads ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 1 ENCFF784VKF 2311447335 Michael Snyder, Stanford 3ff04064fab321c0ddd762659884cf75 SRA:SRR6213008 https://www.encodeproject.org/files/ENCFF617KOF/@@download/ENCFF617KOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF433UHK bam unfiltered alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHT, ENCFF002EHX, ENCFF617KOF, ENCFF643CGH, ENCFF784VKF 9589045302 ENCODE Processing Pipeline 945708fbf667464b9c4b62412de9dcbe https://www.encodeproject.org/files/ENCFF433UHK/@@download/ENCFF433UHK.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF178XEH bam unfiltered alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTV, ENCFF002EHV, ENCFF643CGH 8638935241 ENCODE Processing Pipeline f3f876ae8d08c3fade6704cb04837446 https://www.encodeproject.org/files/ENCFF178XEH/@@download/ENCFF178XEH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF156EYR bam unfiltered alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHT, ENCFF002EHX, ENCFF617KOF, ENCFF784VKF, ENCFF807MUK 9590287774 ENCODE Processing Pipeline b7e95da127b9f7077ab02213f411fe58 https://www.encodeproject.org/files/ENCFF156EYR/@@download/ENCFF156EYR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF988DLZ bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHT, ENCFF002EHX, ENCFF617KOF, ENCFF643CGH, ENCFF784VKF 4822495994 ENCODE Processing Pipeline 3cc1f498bcc60329620476b1adca0d8f https://www.encodeproject.org/files/ENCFF988DLZ/@@download/ENCFF988DLZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF077BZZ bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHT, ENCFF002EHX, ENCFF617KOF, ENCFF784VKF, ENCFF807MUK 4819659732 ENCODE Processing Pipeline d6d3c184cbf7effede2d0e7f11787407 https://www.encodeproject.org/files/ENCFF077BZZ/@@download/ENCFF077BZZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF957CQI bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTV, ENCFF002EHV, ENCFF643CGH 5565117541 ENCODE Processing Pipeline 8c8f32bde4c2abc29a5d0dd2c85b4625 https://www.encodeproject.org/files/ENCFF957CQI/@@download/ENCFF957CQI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF662EFX bigWig signal p-value ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF077BZZ, ENCFF080XQT, ENCFF980CFV 1887201200 ENCODE Processing Pipeline 93236e9564b7751ec63268c04f02f944 https://www.encodeproject.org/files/ENCFF662EFX/@@download/ENCFF662EFX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF346ZPN bigWig fold change over control ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF077BZZ, ENCFF080XQT, ENCFF980CFV 1662653252 ENCODE Processing Pipeline 1b2d02bd874050aa6d51d07e6255c57e https://www.encodeproject.org/files/ENCFF346ZPN/@@download/ENCFF346ZPN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF851ZRH bigWig signal p-value ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF077BZZ, ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 1830866824 ENCODE Processing Pipeline cef9108a8976b0348f1beb2eb1bbc069 https://www.encodeproject.org/files/ENCFF851ZRH/@@download/ENCFF851ZRH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF903XTX bigWig fold change over control ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 1805476019 ENCODE Processing Pipeline da548609721b9b0c5e7b1663438f25ac https://www.encodeproject.org/files/ENCFF903XTX/@@download/ENCFF903XTX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF234BJW bigWig signal p-value ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 1766716689 ENCODE Processing Pipeline 5a4e47385aaaa2ddfa22f5cacc15bf64 https://www.encodeproject.org/files/ENCFF234BJW/@@download/ENCFF234BJW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF443BDB bigBed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF830CSU 13834741 ENCODE Processing Pipeline 7ee127e4635851477d633590976afd48 https://www.encodeproject.org/files/ENCFF443BDB/@@download/ENCFF443BDB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF246HIM bed narrowPeak optimal idr thresholded peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF406ZDS, ENCFF567WYM, ENCFF830CSU 831522 ENCODE Processing Pipeline 7be299ee1f00b328b82605fa5e21fa6b https://www.encodeproject.org/files/ENCFF246HIM/@@download/ENCFF246HIM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF567WYM bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF077BZZ, ENCFF080XQT, ENCFF980CFV 6808638 ENCODE Processing Pipeline 8ddf8c10ad5bc526cf954e7831740a35 https://www.encodeproject.org/files/ENCFF567WYM/@@download/ENCFF567WYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF818XWW bigWig fold change over control ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF077BZZ, ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 2284003845 ENCODE Processing Pipeline 9d9db6fd2b40158c3a16539e753dc1e1 https://www.encodeproject.org/files/ENCFF818XWW/@@download/ENCFF818XWW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF188LNL bigBed narrowPeak optimal idr thresholded peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF246HIM 1685593 ENCODE Processing Pipeline 6840121abab6b0030e32e2db1cbf902c https://www.encodeproject.org/files/ENCFF188LNL/@@download/ENCFF188LNL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF830CSU bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 7030738 ENCODE Processing Pipeline e5860c326800a5dd895b7b6fcefa0822 https://www.encodeproject.org/files/ENCFF830CSU/@@download/ENCFF830CSU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF406ZDS bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF077BZZ, ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 7231879 ENCODE Processing Pipeline 54be15c6dbececd44a5374b9e93d1ae4 https://www.encodeproject.org/files/ENCFF406ZDS/@@download/ENCFF406ZDS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF964RZO bigBed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF567WYM 13731674 ENCODE Processing Pipeline 290d372a7f3825dbb2ec6ae93c0ed7bf https://www.encodeproject.org/files/ENCFF964RZO/@@download/ENCFF964RZO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF663PIF bigBed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF406ZDS 13792342 ENCODE Processing Pipeline e794e3864cf6ae67f3d49761ea2d8327 https://www.encodeproject.org/files/ENCFF663PIF/@@download/ENCFF663PIF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565SRA bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF957CQI 6954337 ENCODE Processing Pipeline 0260ba9402e74856861d6d426a05d60a https://www.encodeproject.org/files/ENCFF565SRA/@@download/ENCFF565SRA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF466SCB bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF396QTX, ENCFF957CQI, ENCFF988DLZ 7213580 ENCODE Processing Pipeline 4000c50dd353ce701bbe56c9d68f56e6 https://www.encodeproject.org/files/ENCFF466SCB/@@download/ENCFF466SCB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF574GFB bigBed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF924RUE 13808099 ENCODE Processing Pipeline acd9f1a8d883f11ee458410b25ac07f7 https://www.encodeproject.org/files/ENCFF574GFB/@@download/ENCFF574GFB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF844XVI bigBed narrowPeak optimal idr thresholded peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF454TRL 1676385 ENCODE Processing Pipeline 34c1e3c3a36eb434a65dad8b48889a53 https://www.encodeproject.org/files/ENCFF844XVI/@@download/ENCFF844XVI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF037GQB bigWig fold change over control ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF396QTX, ENCFF988DLZ 1670631143 ENCODE Processing Pipeline 2e4330fb12bad8c9d407d6ba947b437f https://www.encodeproject.org/files/ENCFF037GQB/@@download/ENCFF037GQB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF367FWF bigWig signal p-value ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF396QTX, ENCFF988DLZ 1694079481 ENCODE Processing Pipeline 5f72d8d228471c34715fd2a1ea02647a https://www.encodeproject.org/files/ENCFF367FWF/@@download/ENCFF367FWF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF173KDV bigBed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF466SCB 13779733 ENCODE Processing Pipeline 8517ad6df440cd04daf51308005922f4 https://www.encodeproject.org/files/ENCFF173KDV/@@download/ENCFF173KDV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF597TIS bigWig signal p-value ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF957CQI 1785876083 ENCODE Processing Pipeline 8f421cb70227ef2925622cc69ce6510e https://www.encodeproject.org/files/ENCFF597TIS/@@download/ENCFF597TIS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF094VIS bigWig signal p-value ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF396QTX, ENCFF957CQI, ENCFF988DLZ 1887125380 ENCODE Processing Pipeline 69cd86c377ade45d6e6ca58ba450bab1 https://www.encodeproject.org/files/ENCFF094VIS/@@download/ENCFF094VIS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF524JVD bigWig fold change over control ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF957CQI 1805129792 ENCODE Processing Pipeline d4c330b1b807990a008d97c01f988844 https://www.encodeproject.org/files/ENCFF524JVD/@@download/ENCFF524JVD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF093REE bigWig fold change over control ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF396QTX, ENCFF957CQI, ENCFF988DLZ 2310711819 ENCODE Processing Pipeline ba1f45d3caee09e97ebf824258a7ba97 https://www.encodeproject.org/files/ENCFF093REE/@@download/ENCFF093REE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF924RUE bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF396QTX, ENCFF988DLZ 6861585 ENCODE Processing Pipeline 8ba43757c1330b825aa2c48d273084ab https://www.encodeproject.org/files/ENCFF924RUE/@@download/ENCFF924RUE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF140HDE bigBed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF565SRA 13751877 ENCODE Processing Pipeline 62b522501c1ddafb523e098dd8995e59 https://www.encodeproject.org/files/ENCFF140HDE/@@download/ENCFF140HDE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF454TRL bed narrowPeak optimal idr thresholded peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF466SCB, ENCFF565SRA, ENCFF924RUE 825597 ENCODE Processing Pipeline 0ad3711b736bc13a5cd1ecbb70dbc955 https://www.encodeproject.org/files/ENCFF454TRL/@@download/ENCFF454TRL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF176BPB fastq reads ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF039IGX 2879573464 Michael Snyder, Stanford 6ff20db924d5acf451df8a4f4e20fa4b SRA:SRR5112008 https://www.encodeproject.org/files/ENCFF176BPB/@@download/ENCFF176BPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF208FLC fastq reads ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF593NUK 2275177138 Michael Snyder, Stanford d25210fc2be279a8e4d4fcfcd2215ece SRA:SRR5112007 https://www.encodeproject.org/files/ENCFF208FLC/@@download/ENCFF208FLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF039IGX fastq reads ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF176BPB 2960052328 Michael Snyder, Stanford 455bd81409b4a776626229fe75d78de7 SRA:SRR5112008 https://www.encodeproject.org/files/ENCFF039IGX/@@download/ENCFF039IGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF593NUK fastq reads ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF208FLC 2336879733 Michael Snyder, Stanford 721ad35647dff3a33752b465217bef71 SRA:SRR5112007 https://www.encodeproject.org/files/ENCFF593NUK/@@download/ENCFF593NUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF329CGC bam unfiltered alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208FLC, ENCFF593NUK, ENCFF807MUK 5169374755 ENCODE Processing Pipeline 5d7b3953c4a1cf5ef39bf74020a471a1 https://www.encodeproject.org/files/ENCFF329CGC/@@download/ENCFF329CGC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF966STP bam unfiltered alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF039IGX, ENCFF176BPB, ENCFF807MUK 6438706045 ENCODE Processing Pipeline 88088627ed75325b77315ffb0a791f3f https://www.encodeproject.org/files/ENCFF966STP/@@download/ENCFF966STP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF965LNU bam unfiltered alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF039IGX, ENCFF176BPB, ENCFF643CGH 6446025776 ENCODE Processing Pipeline 635f2f6533f362e821a83df4ca3af54a https://www.encodeproject.org/files/ENCFF965LNU/@@download/ENCFF965LNU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF202YYL bam unfiltered alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208FLC, ENCFF593NUK, ENCFF643CGH 5176025841 ENCODE Processing Pipeline b619c99f2bd63c38795564db478a061a https://www.encodeproject.org/files/ENCFF202YYL/@@download/ENCFF202YYL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF973PTB bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208FLC, ENCFF593NUK, ENCFF807MUK 4419480675 ENCODE Processing Pipeline 4e4d5761e9c35b156dad4f57a497b039 https://www.encodeproject.org/files/ENCFF973PTB/@@download/ENCFF973PTB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF416GTI bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF039IGX, ENCFF176BPB, ENCFF807MUK 5504664779 ENCODE Processing Pipeline 6c47ca47d05b0acaf090d752169c46f0 https://www.encodeproject.org/files/ENCFF416GTI/@@download/ENCFF416GTI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF207QWX bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208FLC, ENCFF593NUK, ENCFF643CGH 4420693368 ENCODE Processing Pipeline 8bb81145e564085d77acfdb105a42cef https://www.encodeproject.org/files/ENCFF207QWX/@@download/ENCFF207QWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF740JFH bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF039IGX, ENCFF176BPB, ENCFF643CGH 5506916906 ENCODE Processing Pipeline c24bf9819074b550d337bd13413f9783 https://www.encodeproject.org/files/ENCFF740JFH/@@download/ENCFF740JFH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF994FPT bigWig signal p-value ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF973PTB 1363512734 ENCODE Processing Pipeline 12065a1cf8b2c9464233db26642bb003 https://www.encodeproject.org/files/ENCFF994FPT/@@download/ENCFF994FPT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF427JFH bigWig signal p-value ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF416GTI 1419859823 ENCODE Processing Pipeline c3b67b8aeffd17a38badaca98af93e7f https://www.encodeproject.org/files/ENCFF427JFH/@@download/ENCFF427JFH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF907WGH bigWig signal p-value ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF416GTI, ENCFF973PTB 1952531132 ENCODE Processing Pipeline cd660380453d2d7c77d184e0dc2b61af https://www.encodeproject.org/files/ENCFF907WGH/@@download/ENCFF907WGH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF315TGU bigWig fold change over control ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF973PTB 1324840389 ENCODE Processing Pipeline c5d480bc7fd2caa574a5da3e44f754d2 https://www.encodeproject.org/files/ENCFF315TGU/@@download/ENCFF315TGU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF611OSE bigWig fold change over control ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF416GTI 1508863729 ENCODE Processing Pipeline 339449489ef2bc42d48562686e23b9f8 https://www.encodeproject.org/files/ENCFF611OSE/@@download/ENCFF611OSE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF197DOE bigWig fold change over control ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF416GTI, ENCFF973PTB 1962987419 ENCODE Processing Pipeline 98609ee3bc50fce558acd3f2ea1dea08 https://www.encodeproject.org/files/ENCFF197DOE/@@download/ENCFF197DOE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF121EDV bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF973PTB 6820687 ENCODE Processing Pipeline f198b8db276d8e9214e3550efd5ce3a1 https://www.encodeproject.org/files/ENCFF121EDV/@@download/ENCFF121EDV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF299XML bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF416GTI 6981507 ENCODE Processing Pipeline 704d8978ab38cb047bd51c0681113bda https://www.encodeproject.org/files/ENCFF299XML/@@download/ENCFF299XML.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF946NYL bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF416GTI, ENCFF973PTB 7256026 ENCODE Processing Pipeline 958c61dc832207557c240de260518b76 https://www.encodeproject.org/files/ENCFF946NYL/@@download/ENCFF946NYL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF046FZQ bigBed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF121EDV 13443035 ENCODE Processing Pipeline c88e3eeea718ee192e1c4b06df6c2ede https://www.encodeproject.org/files/ENCFF046FZQ/@@download/ENCFF046FZQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF730EBH bigBed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF299XML 13402174 ENCODE Processing Pipeline 438d5a94dfc4b9ff37caf0e5d246b25a https://www.encodeproject.org/files/ENCFF730EBH/@@download/ENCFF730EBH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF365PRZ bigBed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF946NYL 13325957 ENCODE Processing Pipeline afc4ac109cb0e7b363f4e053caaa9155 https://www.encodeproject.org/files/ENCFF365PRZ/@@download/ENCFF365PRZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF943FSB bed narrowPeak conservative idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF121EDV, ENCFF299XML, ENCFF946NYL 398814 ENCODE Processing Pipeline d805e1ec8491256c963305a04d28cfdd https://www.encodeproject.org/files/ENCFF943FSB/@@download/ENCFF943FSB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF850CFH bigBed narrowPeak conservative idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF943FSB 689281 ENCODE Processing Pipeline a88374e85bf92675d353c17711c22b01 https://www.encodeproject.org/files/ENCFF850CFH/@@download/ENCFF850CFH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF497IKJ bed narrowPeak optimal idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF121EDV, ENCFF299XML, ENCFF946NYL 490521 ENCODE Processing Pipeline 19df4637fa18fb4cadad0dc5a8d66d59 https://www.encodeproject.org/files/ENCFF497IKJ/@@download/ENCFF497IKJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF843JKD bigBed narrowPeak optimal idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF497IKJ 993507 ENCODE Processing Pipeline fd73cc93962b36e537f26881e2772897 https://www.encodeproject.org/files/ENCFF843JKD/@@download/ENCFF843JKD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF390OMD bigWig signal p-value ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF207QWX 1167218867 ENCODE Processing Pipeline 4f6b45d8d81adf79a8b0c639dab878fa https://www.encodeproject.org/files/ENCFF390OMD/@@download/ENCFF390OMD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF575MCS bigWig signal p-value ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF740JFH 1444176172 ENCODE Processing Pipeline 749111123b92019d2864d657006b7dbd https://www.encodeproject.org/files/ENCFF575MCS/@@download/ENCFF575MCS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF259XND bigWig signal p-value ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF207QWX, ENCFF740JFH 1983181610 ENCODE Processing Pipeline 544a00bd88d2cb84078efcc54172cea4 https://www.encodeproject.org/files/ENCFF259XND/@@download/ENCFF259XND.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF981JJH bigWig fold change over control ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF207QWX 1325819493 ENCODE Processing Pipeline e8df8104abcdd772a1e572e16d52da53 https://www.encodeproject.org/files/ENCFF981JJH/@@download/ENCFF981JJH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF707DTC bigWig fold change over control ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF740JFH 1509947023 ENCODE Processing Pipeline 6ae5a5cf2f6a2377f700e8e37fa49442 https://www.encodeproject.org/files/ENCFF707DTC/@@download/ENCFF707DTC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF797QMZ bigWig fold change over control ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF207QWX, ENCFF740JFH 1995948355 ENCODE Processing Pipeline 32719fa76c000fa0c7b4022fa8872971 https://www.encodeproject.org/files/ENCFF797QMZ/@@download/ENCFF797QMZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF163QLV bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF207QWX 6697597 ENCODE Processing Pipeline 7d0e71dbe972a057130c7884d4c0b72d https://www.encodeproject.org/files/ENCFF163QLV/@@download/ENCFF163QLV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF854XSG bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF740JFH 6917469 ENCODE Processing Pipeline 5e157b59754f6ff0bc559e84a8003560 https://www.encodeproject.org/files/ENCFF854XSG/@@download/ENCFF854XSG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF385RNT bigBed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF163QLV 13456558 ENCODE Processing Pipeline 7015ef25f2757536acee654866168518 https://www.encodeproject.org/files/ENCFF385RNT/@@download/ENCFF385RNT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF400EHM bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF207QWX, ENCFF740JFH 7244177 ENCODE Processing Pipeline d8a818a91e865391276ccfe9771a71f6 https://www.encodeproject.org/files/ENCFF400EHM/@@download/ENCFF400EHM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF813PJP bigBed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF854XSG 13420158 ENCODE Processing Pipeline 212fc12d314997e2487bf6fff8508446 https://www.encodeproject.org/files/ENCFF813PJP/@@download/ENCFF813PJP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF930WUB bigBed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF400EHM 13340940 ENCODE Processing Pipeline fa4d3c8376bf2f82ccd35f7315941219 https://www.encodeproject.org/files/ENCFF930WUB/@@download/ENCFF930WUB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF073LLB bed narrowPeak conservative idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF163QLV, ENCFF400EHM, ENCFF419RSJ, ENCFF854XSG 398173 ENCODE Processing Pipeline 13655fef321433a03730e1f32da5c03c https://www.encodeproject.org/files/ENCFF073LLB/@@download/ENCFF073LLB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF184MFZ bigBed narrowPeak conservative idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF073LLB 689650 ENCODE Processing Pipeline 7bab37d24d45ffed1e03a56ca538145b https://www.encodeproject.org/files/ENCFF184MFZ/@@download/ENCFF184MFZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF337BRJ bed narrowPeak optimal idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF163QLV, ENCFF400EHM, ENCFF419RSJ, ENCFF854XSG 499430 ENCODE Processing Pipeline fad801fadc27a6dc5d5f6ce14928ca56 https://www.encodeproject.org/files/ENCFF337BRJ/@@download/ENCFF337BRJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF791FGP bigBed narrowPeak optimal idr thresholded peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF337BRJ 1008623 ENCODE Processing Pipeline ed409df0cb17a23effe57d6f0dd671ad https://www.encodeproject.org/files/ENCFF791FGP/@@download/ENCFF791FGP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF186GBM fastq reads ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF394CJB 3792137139 Michael Snyder, Stanford 08ed9903f4936127c45d1aca8c86e910 SRA:SRR5112151 https://www.encodeproject.org/files/ENCFF186GBM/@@download/ENCFF186GBM.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released mild to moderate bottlenecking ENCFF394CJB fastq reads ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF186GBM 3783411487 Michael Snyder, Stanford 262d8e2bc9d176c742fcc8ddb4a0e704 SRA:SRR5112151 https://www.encodeproject.org/files/ENCFF394CJB/@@download/ENCFF394CJB.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released mild to moderate bottlenecking ENCFF692TZI fastq reads ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF762YIW 3077055398 Michael Snyder, Stanford f2146b3ea7bb236c00d0c20199daf145 SRA:SRR5112152 https://www.encodeproject.org/files/ENCFF692TZI/@@download/ENCFF692TZI.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released mild to moderate bottlenecking ENCFF762YIW fastq reads ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF692TZI 3079188083 Michael Snyder, Stanford 27ba2875aea8d85a4a1366f1e5ed76d8 SRA:SRR5112152 https://www.encodeproject.org/files/ENCFF762YIW/@@download/ENCFF762YIW.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released mild to moderate bottlenecking ENCFF821DRJ bam unfiltered alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF692TZI, ENCFF762YIW, ENCFF807MUK 6408418065 ENCODE Processing Pipeline dbc93e3a4e482daf6cfe358eb91c61c3 https://www.encodeproject.org/files/ENCFF821DRJ/@@download/ENCFF821DRJ.bam hg19 released mild to moderate bottlenecking ENCFF345KWK bam unfiltered alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF186GBM, ENCFF394CJB, ENCFF807MUK 7781286548 ENCODE Processing Pipeline 12c76f38531ceff8a614a924b4fcc368 https://www.encodeproject.org/files/ENCFF345KWK/@@download/ENCFF345KWK.bam hg19 released mild to moderate bottlenecking ENCFF459WEJ bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF692TZI, ENCFF762YIW, ENCFF807MUK 4409714980 ENCODE Processing Pipeline 33ec928c9e2891dbb6d83a63ffd2c47b https://www.encodeproject.org/files/ENCFF459WEJ/@@download/ENCFF459WEJ.bam hg19 released mild to moderate bottlenecking ENCFF134FYL bam unfiltered alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF643CGH, ENCFF692TZI, ENCFF762YIW 6417666720 ENCODE Processing Pipeline 01ca3ec4396daee0ad29f1d5b8064121 https://www.encodeproject.org/files/ENCFF134FYL/@@download/ENCFF134FYL.bam GRCh38 released mild to moderate bottlenecking ENCFF009OHH bam unfiltered alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF186GBM, ENCFF394CJB, ENCFF643CGH 7792772409 ENCODE Processing Pipeline 41a87a8a0bd4dba48effe0e7a2ef337e https://www.encodeproject.org/files/ENCFF009OHH/@@download/ENCFF009OHH.bam GRCh38 released mild to moderate bottlenecking ENCFF926PMG bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF186GBM, ENCFF394CJB, ENCFF807MUK 5406362865 ENCODE Processing Pipeline f23b4d5ee3ab7f2700afdde546671261 https://www.encodeproject.org/files/ENCFF926PMG/@@download/ENCFF926PMG.bam hg19 released mild to moderate bottlenecking ENCFF364SJK bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF643CGH, ENCFF692TZI, ENCFF762YIW 4411681149 ENCODE Processing Pipeline f1b53ba60a083375d5f08982e907f8f8 https://www.encodeproject.org/files/ENCFF364SJK/@@download/ENCFF364SJK.bam GRCh38 released mild to moderate bottlenecking ENCFF611PXX bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF186GBM, ENCFF394CJB, ENCFF643CGH 5409274518 ENCODE Processing Pipeline d70496bf33fb7e117bef5543532cca57 https://www.encodeproject.org/files/ENCFF611PXX/@@download/ENCFF611PXX.bam GRCh38 released mild to moderate bottlenecking ENCFF311IHN bigWig signal p-value ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF611PXX, ENCFF720AUK, ENCFF796JTX 1336990881 ENCODE Processing Pipeline 5586ab92eacf2f5488dd43f2944d6460 https://www.encodeproject.org/files/ENCFF311IHN/@@download/ENCFF311IHN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF361ACG bigWig signal p-value ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF364SJK, ENCFF720AUK, ENCFF796JTX 1318008362 ENCODE Processing Pipeline dfb7bb36fdc38a2b8a6919d00519857c https://www.encodeproject.org/files/ENCFF361ACG/@@download/ENCFF361ACG.bigWig GRCh38 released mild to moderate bottlenecking ENCFF966HWQ bigWig signal p-value ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF364SJK, ENCFF611PXX, ENCFF720AUK, ENCFF796JTX 1467068929 ENCODE Processing Pipeline fe497f6ed261340c456a0e5bd360d90a https://www.encodeproject.org/files/ENCFF966HWQ/@@download/ENCFF966HWQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF589JOA bigWig fold change over control ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF611PXX, ENCFF720AUK, ENCFF796JTX 1394287098 ENCODE Processing Pipeline 018463d64350b996ea42d46f398787a0 https://www.encodeproject.org/files/ENCFF589JOA/@@download/ENCFF589JOA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF337NGR bigWig fold change over control ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF364SJK, ENCFF720AUK, ENCFF796JTX 1231941082 ENCODE Processing Pipeline a8ef4d3b8ecfdb8374dca8486007c3d5 https://www.encodeproject.org/files/ENCFF337NGR/@@download/ENCFF337NGR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF589LQL bigWig fold change over control ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF364SJK, ENCFF611PXX, ENCFF720AUK, ENCFF796JTX 1863615152 ENCODE Processing Pipeline 34df9e18eb9d42422a232ae146388ed8 https://www.encodeproject.org/files/ENCFF589LQL/@@download/ENCFF589LQL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF621DBO bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF364SJK, ENCFF720AUK, ENCFF796JTX 6075905 ENCODE Processing Pipeline 803ab312bbf60f761aa6ffa655ae3a85 https://www.encodeproject.org/files/ENCFF621DBO/@@download/ENCFF621DBO.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF058MIV bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF364SJK, ENCFF611PXX, ENCFF720AUK, ENCFF796JTX 7020037 ENCODE Processing Pipeline c8bb7d8e6ff02df3f07a2e46a55cbf2b https://www.encodeproject.org/files/ENCFF058MIV/@@download/ENCFF058MIV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF689ZOM bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF611PXX, ENCFF720AUK, ENCFF796JTX 6365495 ENCODE Processing Pipeline 4b21d147c72232e8e00388e6e9fb8a28 https://www.encodeproject.org/files/ENCFF689ZOM/@@download/ENCFF689ZOM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF248UZK bigBed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF621DBO 11233087 ENCODE Processing Pipeline d0106f2e3e94dd52d2206194821817e9 https://www.encodeproject.org/files/ENCFF248UZK/@@download/ENCFF248UZK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF006DZW bigBed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF689ZOM 11229846 ENCODE Processing Pipeline f0a4dcd68736bcf4ce1b966dee19868e https://www.encodeproject.org/files/ENCFF006DZW/@@download/ENCFF006DZW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF293OGY bigBed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF058MIV 11362695 ENCODE Processing Pipeline 704c7dea363087fcc1de57c5b2d7ae66 https://www.encodeproject.org/files/ENCFF293OGY/@@download/ENCFF293OGY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF201FXV bigBed narrowPeak conservative idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF443TUR 73892 ENCODE Processing Pipeline faf18f7a66423f6e445da007277fc803 https://www.encodeproject.org/files/ENCFF201FXV/@@download/ENCFF201FXV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF443TUR bed narrowPeak conservative idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF058MIV, ENCFF419RSJ, ENCFF621DBO, ENCFF689ZOM 17608 ENCODE Processing Pipeline 1529c8c190aa22eaf4339f61d5a577c7 https://www.encodeproject.org/files/ENCFF443TUR/@@download/ENCFF443TUR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF765NAN bed narrowPeak optimal idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF058MIV, ENCFF419RSJ, ENCFF621DBO, ENCFF689ZOM 26015 ENCODE Processing Pipeline 7adb246f7f66d376afbf4f862b272fbc https://www.encodeproject.org/files/ENCFF765NAN/@@download/ENCFF765NAN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF518MXO bigBed narrowPeak optimal idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF765NAN 85828 ENCODE Processing Pipeline ffba242b2fd6cd5f462d330662fd854a https://www.encodeproject.org/files/ENCFF518MXO/@@download/ENCFF518MXO.bigBed GRCh38 released mild to moderate bottlenecking ENCFF357BZY bigWig signal p-value ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF926PMG 1490539205 ENCODE Processing Pipeline 37b8afd6db605088fe59db4778cd92c3 https://www.encodeproject.org/files/ENCFF357BZY/@@download/ENCFF357BZY.bigWig hg19 released mild to moderate bottlenecking ENCFF683KSH bigWig signal p-value ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV 1288659170 ENCODE Processing Pipeline 999ac9f8385531d350be67dddb74181e https://www.encodeproject.org/files/ENCFF683KSH/@@download/ENCFF683KSH.bigWig hg19 released mild to moderate bottlenecking ENCFF916GEK bigWig signal p-value ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV, ENCFF926PMG 1503845862 ENCODE Processing Pipeline bc47023d695e14379139303212a9db36 https://www.encodeproject.org/files/ENCFF916GEK/@@download/ENCFF916GEK.bigWig hg19 released mild to moderate bottlenecking ENCFF395QUD bigWig fold change over control ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF926PMG 1411547637 ENCODE Processing Pipeline 63ae76bc4826cbd100e0edd89b010776 https://www.encodeproject.org/files/ENCFF395QUD/@@download/ENCFF395QUD.bigWig hg19 released mild to moderate bottlenecking ENCFF217XVH bigWig fold change over control ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV 1234384811 ENCODE Processing Pipeline 39c9be313eafc2f9def37c1a0dcd58d4 https://www.encodeproject.org/files/ENCFF217XVH/@@download/ENCFF217XVH.bigWig hg19 released mild to moderate bottlenecking ENCFF147BRO bigWig fold change over control ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV, ENCFF926PMG 1863198011 ENCODE Processing Pipeline d4d0517327762779a4e2a62f2646c40c https://www.encodeproject.org/files/ENCFF147BRO/@@download/ENCFF147BRO.bigWig hg19 released mild to moderate bottlenecking ENCFF996FCB bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV 6072101 ENCODE Processing Pipeline 6a573d9edf0d948d5d9e9723b9b2c238 https://www.encodeproject.org/files/ENCFF996FCB/@@download/ENCFF996FCB.bed.gz hg19 released mild to moderate bottlenecking ENCFF113ZZY bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF926PMG 6362678 ENCODE Processing Pipeline 00f61c261bb370338c498caa0b167c0f https://www.encodeproject.org/files/ENCFF113ZZY/@@download/ENCFF113ZZY.bed.gz hg19 released mild to moderate bottlenecking ENCFF837QWL bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV, ENCFF926PMG 7014363 ENCODE Processing Pipeline 9eb17206026c620ac90dc15fe407e37f https://www.encodeproject.org/files/ENCFF837QWL/@@download/ENCFF837QWL.bed.gz hg19 released mild to moderate bottlenecking ENCFF609GBJ bigBed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF113ZZY 11214292 ENCODE Processing Pipeline a4b46676d99169644334324382c78a38 https://www.encodeproject.org/files/ENCFF609GBJ/@@download/ENCFF609GBJ.bigBed hg19 released mild to moderate bottlenecking ENCFF350IYW bigBed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF996FCB 11217491 ENCODE Processing Pipeline 557420a78786bc498a03a935bb55c647 https://www.encodeproject.org/files/ENCFF350IYW/@@download/ENCFF350IYW.bigBed hg19 released mild to moderate bottlenecking ENCFF457LHY bigBed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF837QWL 11344610 ENCODE Processing Pipeline c8a9b95e8131ef00c48bfa94c3b36cd0 https://www.encodeproject.org/files/ENCFF457LHY/@@download/ENCFF457LHY.bigBed hg19 released mild to moderate bottlenecking ENCFF547KFA bed narrowPeak conservative idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF113ZZY, ENCFF837QWL, ENCFF996FCB 17860 ENCODE Processing Pipeline 0f34fc97d6b1cdb9ff9fef2b0edc9593 https://www.encodeproject.org/files/ENCFF547KFA/@@download/ENCFF547KFA.bed.gz hg19 released mild to moderate bottlenecking ENCFF261LDJ bigBed narrowPeak conservative idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF547KFA 73253 ENCODE Processing Pipeline 9beb7894bd00de72fa23b12dd35f511a https://www.encodeproject.org/files/ENCFF261LDJ/@@download/ENCFF261LDJ.bigBed hg19 released mild to moderate bottlenecking ENCFF809YFY bed narrowPeak optimal idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF113ZZY, ENCFF837QWL, ENCFF996FCB 26422 ENCODE Processing Pipeline 853ae621eda61d33788aa4e3acaa8aba https://www.encodeproject.org/files/ENCFF809YFY/@@download/ENCFF809YFY.bed.gz hg19 released mild to moderate bottlenecking ENCFF668TIT bigBed narrowPeak optimal idr thresholded peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF809YFY 84881 ENCODE Processing Pipeline ac30363e974ea3708ad8992411aeea99 https://www.encodeproject.org/files/ENCFF668TIT/@@download/ENCFF668TIT.bigBed hg19 released mild to moderate bottlenecking ENCFF495EIG bam unfiltered alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 100 ENCFF071FDG, ENCFF807MUK, ENCFF881HGO 4497466718 ENCODE Processing Pipeline d3b8aa05324d5e7a248e140f6c9cc496 https://www.encodeproject.org/files/ENCFF495EIG/@@download/ENCFF495EIG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF416DWT bam unfiltered alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 100 ENCFF771DFR, ENCFF807MUK, ENCFF931EDX 4034901237 ENCODE Processing Pipeline f8215af7e978795d444f7984a40d5de0 https://www.encodeproject.org/files/ENCFF416DWT/@@download/ENCFF416DWT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF771DFR fastq reads ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF931EDX 1796731148 Michael Snyder, Stanford 1d171754e9b67e1cfb3cc180a1acfd31 SRA:SRR5111586 https://www.encodeproject.org/files/ENCFF771DFR/@@download/ENCFF771DFR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF881HGO fastq reads ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF071FDG 2080601313 Michael Snyder, Stanford 46ff5036770d3023489cdb0705c79042 SRA:SRR5111587 https://www.encodeproject.org/files/ENCFF881HGO/@@download/ENCFF881HGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF071FDG fastq reads ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF881HGO 2153950970 Michael Snyder, Stanford b22171185551357834f2bf0d8d5045ee SRA:SRR5111587 https://www.encodeproject.org/files/ENCFF071FDG/@@download/ENCFF071FDG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF931EDX fastq reads ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF771DFR 1878263941 Michael Snyder, Stanford 4c94c8443fca03fa69ba9956029cc0da SRA:SRR5111586 https://www.encodeproject.org/files/ENCFF931EDX/@@download/ENCFF931EDX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF539AVI bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 100 ENCFF771DFR, ENCFF807MUK, ENCFF931EDX 3108480001 ENCODE Processing Pipeline 559cb8bef608286d573c8e97b0c67455 https://www.encodeproject.org/files/ENCFF539AVI/@@download/ENCFF539AVI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF288YZC bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 100 ENCFF071FDG, ENCFF807MUK, ENCFF881HGO 3172366623 ENCODE Processing Pipeline 1bb95ea3d3d200acbdf6303a6c7d7a5d https://www.encodeproject.org/files/ENCFF288YZC/@@download/ENCFF288YZC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF964VFX bigWig signal p-value ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF539AVI, ENCFF581ZJL 1003318726 ENCODE Processing Pipeline 1b4beae1a2a98dfa765a2a110ee4393e https://www.encodeproject.org/files/ENCFF964VFX/@@download/ENCFF964VFX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF816XSH bigWig signal p-value ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF288YZC 1015681718 ENCODE Processing Pipeline de31fa04ee4745bbcc9299e3ca21d5d8 https://www.encodeproject.org/files/ENCFF816XSH/@@download/ENCFF816XSH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF004FTC bigWig fold change over control ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF539AVI, ENCFF581ZJL 1011233960 ENCODE Processing Pipeline 02c1e9123924e1b208f93c7f0adfd683 https://www.encodeproject.org/files/ENCFF004FTC/@@download/ENCFF004FTC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF923PXI bigWig signal p-value ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF288YZC, ENCFF539AVI, ENCFF581ZJL 1925217947 ENCODE Processing Pipeline b8b47985ac17153d1a70f341130dead1 https://www.encodeproject.org/files/ENCFF923PXI/@@download/ENCFF923PXI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF926SEJ bigWig fold change over control ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF288YZC 962140488 ENCODE Processing Pipeline 4b3558f8cd9e528dc4f9f24ea4435b4c https://www.encodeproject.org/files/ENCFF926SEJ/@@download/ENCFF926SEJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF390GHC bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF539AVI, ENCFF581ZJL 6835475 ENCODE Processing Pipeline 1e4982da3ee81697cbcd6e206d6bd045 https://www.encodeproject.org/files/ENCFF390GHC/@@download/ENCFF390GHC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF024QLB bigBed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF903NXY 13229847 ENCODE Processing Pipeline 650d5e5212c3e205c4f798ce79e4eb01 https://www.encodeproject.org/files/ENCFF024QLB/@@download/ENCFF024QLB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF038EVN bigWig fold change over control ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF288YZC, ENCFF539AVI, ENCFF581ZJL 1902270778 ENCODE Processing Pipeline 5cf124cf4b04b21ae86cb26a2d47723c https://www.encodeproject.org/files/ENCFF038EVN/@@download/ENCFF038EVN.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF355OVA bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF288YZC, ENCFF539AVI, ENCFF581ZJL 7203151 ENCODE Processing Pipeline 6a309cb361febca9809b97952c196ffd https://www.encodeproject.org/files/ENCFF355OVA/@@download/ENCFF355OVA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF903NXY bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF288YZC 6491428 ENCODE Processing Pipeline 39529d91dcd5aa5a8305a0601fdfcc31 https://www.encodeproject.org/files/ENCFF903NXY/@@download/ENCFF903NXY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF658ZSW bigBed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF355OVA 12869972 ENCODE Processing Pipeline 4d4c2b713ff8f483e3b340b87eedbe99 https://www.encodeproject.org/files/ENCFF658ZSW/@@download/ENCFF658ZSW.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF697UBP bigBed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF390GHC 12971823 ENCODE Processing Pipeline 757abc2c1c435aae2ea4460a0c9e7470 https://www.encodeproject.org/files/ENCFF697UBP/@@download/ENCFF697UBP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF256ZQB bam unfiltered alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 100 ENCFF071FDG, ENCFF643CGH, ENCFF881HGO 4500009447 ENCODE Processing Pipeline 6f3a06079337272ce93f6890cc37b0c9 https://www.encodeproject.org/files/ENCFF256ZQB/@@download/ENCFF256ZQB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF522QSE bam unfiltered alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 100 ENCFF643CGH, ENCFF771DFR, ENCFF931EDX 4037165238 ENCODE Processing Pipeline 90431faeef877f96cc1d99fd8735359f https://www.encodeproject.org/files/ENCFF522QSE/@@download/ENCFF522QSE.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF546ZLD bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 100 ENCFF071FDG, ENCFF643CGH, ENCFF881HGO 3173473404 ENCODE Processing Pipeline 8f0d0b75135525d994694663063d1d3c https://www.encodeproject.org/files/ENCFF546ZLD/@@download/ENCFF546ZLD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF562ATM bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 100 ENCFF643CGH, ENCFF771DFR, ENCFF931EDX 3109946312 ENCODE Processing Pipeline 96b42574ea083b41988598703d091128 https://www.encodeproject.org/files/ENCFF562ATM/@@download/ENCFF562ATM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF008XDF bigWig signal p-value ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF562ATM, ENCFF910IKB 950588981 ENCODE Processing Pipeline 960ec6efae145ad023a11ec74989a359 https://www.encodeproject.org/files/ENCFF008XDF/@@download/ENCFF008XDF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF523JFP bigWig signal p-value ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF546ZLD 1018859607 ENCODE Processing Pipeline 4c98b7db6530adb70a3631c6c676cd51 https://www.encodeproject.org/files/ENCFF523JFP/@@download/ENCFF523JFP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF622YMY bigWig signal p-value ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF227IZS, ENCFF546ZLD, ENCFF562ATM, ENCFF910IKB 1904646473 ENCODE Processing Pipeline 16f3adcd2dcec52cf8954dc1f640aaf6 https://www.encodeproject.org/files/ENCFF622YMY/@@download/ENCFF622YMY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF399BSB bigWig fold change over control ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF562ATM, ENCFF910IKB 1006095162 ENCODE Processing Pipeline 92575e1121dffa01e1585932088f71b2 https://www.encodeproject.org/files/ENCFF399BSB/@@download/ENCFF399BSB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF801DDX bigWig fold change over control ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF546ZLD 954082882 ENCODE Processing Pipeline 3a89dd3a3e91dd354800c231e0aa0710 https://www.encodeproject.org/files/ENCFF801DDX/@@download/ENCFF801DDX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF386YEM bigWig fold change over control ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF227IZS, ENCFF546ZLD, ENCFF562ATM, ENCFF910IKB 1903789156 ENCODE Processing Pipeline 56bc50a8509e71cd3a5fd25413833845 https://www.encodeproject.org/files/ENCFF386YEM/@@download/ENCFF386YEM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF850AYK bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF562ATM, ENCFF910IKB 6741243 ENCODE Processing Pipeline 68edb27a79f1b89d1d90feb09f2f9e95 https://www.encodeproject.org/files/ENCFF850AYK/@@download/ENCFF850AYK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF455YZU bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF546ZLD 6313799 ENCODE Processing Pipeline dcd2a6f2df241f9e313cb0ca2e5336c0 https://www.encodeproject.org/files/ENCFF455YZU/@@download/ENCFF455YZU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046HDT bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF227IZS, ENCFF546ZLD, ENCFF562ATM, ENCFF910IKB 7160973 ENCODE Processing Pipeline 1a5e408ea4ccefb3fe976bb665b5300f https://www.encodeproject.org/files/ENCFF046HDT/@@download/ENCFF046HDT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF713EQR bigBed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF850AYK 12980348 ENCODE Processing Pipeline 35fbffb3081b6899278b586d4d86034f https://www.encodeproject.org/files/ENCFF713EQR/@@download/ENCFF713EQR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF745TOK bigBed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF455YZU 13215730 ENCODE Processing Pipeline 4bfb36162a078363b1d15ee29999592c https://www.encodeproject.org/files/ENCFF745TOK/@@download/ENCFF745TOK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF108ARU bigBed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF046HDT 12855039 ENCODE Processing Pipeline cc0cbfa764e331b1b9bedcd282ffd2c9 https://www.encodeproject.org/files/ENCFF108ARU/@@download/ENCFF108ARU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF161EHH bed narrowPeak conservative idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF046HDT, ENCFF419RSJ, ENCFF455YZU, ENCFF850AYK 151813 ENCODE Processing Pipeline b3f0142a013dae17f1431e4c7f05000d https://www.encodeproject.org/files/ENCFF161EHH/@@download/ENCFF161EHH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF876YVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF161EHH 332376 ENCODE Processing Pipeline 91a49fafb3d103bafded39cadf0295ec https://www.encodeproject.org/files/ENCFF876YVQ/@@download/ENCFF876YVQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF536LKB bed narrowPeak optimal idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF046HDT, ENCFF419RSJ, ENCFF455YZU, ENCFF850AYK 188949 ENCODE Processing Pipeline 8f6a1814b4ac0307dc16bca134697e6b https://www.encodeproject.org/files/ENCFF536LKB/@@download/ENCFF536LKB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF482HGB bigBed narrowPeak optimal idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF536LKB 386443 ENCODE Processing Pipeline 4817d92d48910587ba957226a14a75bb https://www.encodeproject.org/files/ENCFF482HGB/@@download/ENCFF482HGB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF584LRJ bigBed narrowPeak conservative idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF738XGF 303525 ENCODE Processing Pipeline 4e1455c35eed01454f6ee30943df1e39 https://www.encodeproject.org/files/ENCFF584LRJ/@@download/ENCFF584LRJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF738XGF bed narrowPeak conservative idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF355OVA, ENCFF390GHC, ENCFF903NXY 130638 ENCODE Processing Pipeline 26afde19db8989bcb8941ebfa250e35d https://www.encodeproject.org/files/ENCFF738XGF/@@download/ENCFF738XGF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF338HQY bed narrowPeak optimal idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF355OVA, ENCFF390GHC, ENCFF903NXY 158966 ENCODE Processing Pipeline 7a457cf032688b56edd701ad2d8a0330 https://www.encodeproject.org/files/ENCFF338HQY/@@download/ENCFF338HQY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF511JNM bigBed narrowPeak optimal idr thresholded peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF338HQY 342828 ENCODE Processing Pipeline 98d69300fba882ecd88ac43163af0aad https://www.encodeproject.org/files/ENCFF511JNM/@@download/ENCFF511JNM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002ACW fastq reads ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 1 36 single-ended 1137870636 Bradley Bernstein, Broad 4370cc9928a033baa166fbc1ff368d2e https://www.encodeproject.org/files/ENCFF002ACW/@@download/ENCFF002ACW.fastq.gz Illumina HiSeq 2000 /files/ENCFF355DMM/, /files/ENCFF812ISD/, /files/ENCFF935ETD/, /files/ENCFF982FDH/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF678OWC bigWig fold change over control ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF506DRY, ENCFF676EKJ, ENCFF749AWO 516765740 ENCODE Processing Pipeline 54273441cc2958fafd479d24b36ca473 https://www.encodeproject.org/files/ENCFF678OWC/@@download/ENCFF678OWC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF206YWO bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF199IID, ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 6743552 ENCODE Processing Pipeline cbd0eb3f49cffb24d12188058a14ac6f https://www.encodeproject.org/files/ENCFF206YWO/@@download/ENCFF206YWO.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF318ASK bigWig signal p-value ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF310IBX, ENCFF506DRY, ENCFF676EKJ, ENCFF749AWO 1318286884 ENCODE Processing Pipeline 5448f56b057c40693dcd0ef877d838e1 https://www.encodeproject.org/files/ENCFF318ASK/@@download/ENCFF318ASK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF775VQJ bigWig signal p-value ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF310IBX, ENCFF506DRY, ENCFF676EKJ 1167286349 ENCODE Processing Pipeline 1e67ea456173ac237da78982b5de1e23 https://www.encodeproject.org/files/ENCFF775VQJ/@@download/ENCFF775VQJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF307KSZ bigWig fold change over control ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF310IBX, ENCFF506DRY, ENCFF676EKJ 1109221059 ENCODE Processing Pipeline c2760e6f61c1e8992f75ee0124ed714a https://www.encodeproject.org/files/ENCFF307KSZ/@@download/ENCFF307KSZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF560IHK bigWig fold change over control ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF310IBX, ENCFF506DRY, ENCFF676EKJ, ENCFF749AWO 1295811336 ENCODE Processing Pipeline 32c29992370b0f19d40e357e49606685 https://www.encodeproject.org/files/ENCFF560IHK/@@download/ENCFF560IHK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF411GVA bigWig signal p-value ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF506DRY, ENCFF676EKJ, ENCFF749AWO 968794487 ENCODE Processing Pipeline f4afe9903a32a57e95add39b7d1291a0 https://www.encodeproject.org/files/ENCFF411GVA/@@download/ENCFF411GVA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF967NOV bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 5253133 ENCODE Processing Pipeline fce57668b13f325ec0a03199697d80bb https://www.encodeproject.org/files/ENCFF967NOV/@@download/ENCFF967NOV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF954IDS bigBed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF685IXP 13293640 ENCODE Processing Pipeline d04d61908bb3230570d9b7620eab48a8 https://www.encodeproject.org/files/ENCFF954IDS/@@download/ENCFF954IDS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF007GMA bigBed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF024TKP 12235239 ENCODE Processing Pipeline cff3d97821556248693a772d0f5ff640 https://www.encodeproject.org/files/ENCFF007GMA/@@download/ENCFF007GMA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF685IXP bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF310IBX, ENCFF506DRY, ENCFF676EKJ 6591916 ENCODE Processing Pipeline 3c3c0293235330f4b2a87e912916b8ff https://www.encodeproject.org/files/ENCFF685IXP/@@download/ENCFF685IXP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF024TKP bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF506DRY, ENCFF676EKJ, ENCFF749AWO 5151776 ENCODE Processing Pipeline d6fb95548ff66dc5f3c6385c0d6dccd6 https://www.encodeproject.org/files/ENCFF024TKP/@@download/ENCFF024TKP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF237DPQ bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF310IBX, ENCFF506DRY, ENCFF676EKJ, ENCFF749AWO 6718802 ENCODE Processing Pipeline a40e15eb9a38ae567ef1418bbfec3ba4 https://www.encodeproject.org/files/ENCFF237DPQ/@@download/ENCFF237DPQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF938CRS bed narrowPeak optimal idr thresholded peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF024TKP, ENCFF237DPQ, ENCFF419RSJ, ENCFF685IXP 1304554 ENCODE Processing Pipeline dffdfe989dea1838c0a758d09907b6aa https://www.encodeproject.org/files/ENCFF938CRS/@@download/ENCFF938CRS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF349SLL bigBed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF237DPQ 13353367 ENCODE Processing Pipeline 0972669fafbda9fb9d28649fae101d00 https://www.encodeproject.org/files/ENCFF349SLL/@@download/ENCFF349SLL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF602PMH bigBed narrowPeak optimal idr thresholded peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF938CRS 2804011 ENCODE Processing Pipeline ae5583b8c3a317b0f7b314e693da2f29 https://www.encodeproject.org/files/ENCFF602PMH/@@download/ENCFF602PMH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF989WYW fastq reads ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 1 36 single-ended 645657409 Bradley Bernstein, Broad 3500b5a163df4f12aada5cf9668b9cf4 https://www.encodeproject.org/files/ENCFF989WYW/@@download/ENCFF989WYW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVH/, /files/ENCFF244WIG/, /files/ENCFF651VMP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF854UWR fastq reads ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 1 37 single-ended 519445939 Bradley Bernstein, Broad f5ceda6652a2dda8c3c99ccbd52b85d0 https://www.encodeproject.org/files/ENCFF854UWR/@@download/ENCFF854UWR.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVH/, /files/ENCFF244WIG/, /files/ENCFF651VMP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF324LPG bam unfiltered alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 36 ENCFF002ACW, ENCFF643CGH 1387419317 ENCODE Processing Pipeline 6c317ed0f1a3acaf91cccb5bfc4cd645 https://www.encodeproject.org/files/ENCFF324LPG/@@download/ENCFF324LPG.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF749AWO bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 36 ENCFF002ACW, ENCFF643CGH 385115912 ENCODE Processing Pipeline 22d2e69692a8e6ec4b4a93abdb2f9b5d https://www.encodeproject.org/files/ENCFF749AWO/@@download/ENCFF749AWO.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF591MKI bam unfiltered alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 36 ENCFF002ACW, ENCFF807MUK 1378480197 ENCODE Processing Pipeline c26d1be68d9460e48818bb0f7c7cfcc5 https://www.encodeproject.org/files/ENCFF591MKI/@@download/ENCFF591MKI.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF696KXY bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 36 ENCFF002ACW, ENCFF807MUK 385490287 ENCODE Processing Pipeline 568a774ebf5d7f89dba14b9d8be2af59 https://www.encodeproject.org/files/ENCFF696KXY/@@download/ENCFF696KXY.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF851MBD bam unfiltered alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 36 ENCFF643CGH, ENCFF854UWR, ENCFF989WYW 1573069904 ENCODE Processing Pipeline 99545b8c42b54cb1afa7118d18f08b01 https://www.encodeproject.org/files/ENCFF851MBD/@@download/ENCFF851MBD.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF520LGZ bam unfiltered alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 36 ENCFF807MUK, ENCFF854UWR, ENCFF989WYW 1561378067 ENCODE Processing Pipeline 05ac4e2cc5baf39a7c2a15af6fdc14a7 https://www.encodeproject.org/files/ENCFF520LGZ/@@download/ENCFF520LGZ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF310IBX bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 36 ENCFF643CGH, ENCFF854UWR, ENCFF989WYW 885096064 ENCODE Processing Pipeline ec7530be5c5ab692d0352995ce29a992 https://www.encodeproject.org/files/ENCFF310IBX/@@download/ENCFF310IBX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF199IID bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 36 ENCFF807MUK, ENCFF854UWR, ENCFF989WYW 885692169 ENCODE Processing Pipeline 3335edf6d3c7f0aa345eccf6042ac757 https://www.encodeproject.org/files/ENCFF199IID/@@download/ENCFF199IID.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF729POU bigWig fold change over control ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 517320581 ENCODE Processing Pipeline 7c332f75fee79830e47b270168d2ccfe https://www.encodeproject.org/files/ENCFF729POU/@@download/ENCFF729POU.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF217SYL bigWig signal p-value ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF199IID, ENCFF349UGY, ENCFF408JOT 1138066762 ENCODE Processing Pipeline 68509fd22961b723fad6b81088675dd9 https://www.encodeproject.org/files/ENCFF217SYL/@@download/ENCFF217SYL.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF512WJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF099NBE 2809339 ENCODE Processing Pipeline f6ec2d4fbc48521abf334cc832f9720a https://www.encodeproject.org/files/ENCFF512WJQ/@@download/ENCFF512WJQ.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF174CCI bigWig fold change over control ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF199IID, ENCFF349UGY, ENCFF408JOT 1110273835 ENCODE Processing Pipeline f2efc393a7636d3a70c22ae781466efb https://www.encodeproject.org/files/ENCFF174CCI/@@download/ENCFF174CCI.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF344IMO bigWig signal p-value ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 1081578188 ENCODE Processing Pipeline e3bce58ef86e7bc4a3fde94d23d0db9b https://www.encodeproject.org/files/ENCFF344IMO/@@download/ENCFF344IMO.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF392UKH bigWig signal p-value ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF199IID, ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 1177155458 ENCODE Processing Pipeline 9d0c9e6941881c76a16779843f11d8fc https://www.encodeproject.org/files/ENCFF392UKH/@@download/ENCFF392UKH.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF576EZJ bigWig fold change over control ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF199IID, ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 1307540172 ENCODE Processing Pipeline 6cfa9a9a77e81d4cb46ce29294cc5dd9 https://www.encodeproject.org/files/ENCFF576EZJ/@@download/ENCFF576EZJ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF708ZIZ bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF199IID, ENCFF349UGY, ENCFF408JOT 6590604 ENCODE Processing Pipeline 15e010e44a5aeebdda732146a668ae15 https://www.encodeproject.org/files/ENCFF708ZIZ/@@download/ENCFF708ZIZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF875DCL bigBed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF708ZIZ 13285430 ENCODE Processing Pipeline ad05e09d4da9f8b35ad433846974f1a2 https://www.encodeproject.org/files/ENCFF875DCL/@@download/ENCFF875DCL.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF274ANQ bigBed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF206YWO 13374913 ENCODE Processing Pipeline 3c36fd873d45f54f0482d8ba2c2a3488 https://www.encodeproject.org/files/ENCFF274ANQ/@@download/ENCFF274ANQ.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF765UQG bigBed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF967NOV 12368801 ENCODE Processing Pipeline e2fc88fbd215a4c633cd431924e2ff05 https://www.encodeproject.org/files/ENCFF765UQG/@@download/ENCFF765UQG.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF099NBE bed narrowPeak optimal idr thresholded peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1, 2 ENCFF001TDO, ENCFF206YWO, ENCFF708ZIZ, ENCFF967NOV 1308100 ENCODE Processing Pipeline a0c9fc2538edaf3c7e6d716df6894959 https://www.encodeproject.org/files/ENCFF099NBE/@@download/ENCFF099NBE.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF655DBC fastq reads ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 2 ENCFF171NPB 1959383600 Michael Snyder, Stanford c85a73838885cf8e1137891a938710c3 SRA:SRR6212977 https://www.encodeproject.org/files/ENCFF655DBC/@@download/ENCFF655DBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF070HUC fastq reads ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 1 ENCFF791KUN 2146455675 Michael Snyder, Stanford b9b623ce7bba03b8ff3e4714892a9979 SRA:SRR6212978 https://www.encodeproject.org/files/ENCFF070HUC/@@download/ENCFF070HUC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF171NPB fastq reads ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 1 101 paired-ended 1 ENCFF655DBC 1958907385 Michael Snyder, Stanford c5cfe058f390ff3cf5e89866444d01cd SRA:SRR6212977 https://www.encodeproject.org/files/ENCFF171NPB/@@download/ENCFF171NPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF791KUN fastq reads ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 1 101 paired-ended 2 ENCFF070HUC 2142161758 Michael Snyder, Stanford 424365b973aedf8beaf8e0a39fdb714b SRA:SRR6212978 https://www.encodeproject.org/files/ENCFF791KUN/@@download/ENCFF791KUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF376QVY bam unfiltered alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF070HUC, ENCFF643CGH, ENCFF791KUN 4768275288 ENCODE Processing Pipeline 72169cf47e640c9b0b790271c385e562 https://www.encodeproject.org/files/ENCFF376QVY/@@download/ENCFF376QVY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF043HLE bam unfiltered alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF070HUC, ENCFF791KUN, ENCFF807MUK 4762838450 ENCODE Processing Pipeline 82b1f8c7186c7d70d0bff631d3e8ba17 https://www.encodeproject.org/files/ENCFF043HLE/@@download/ENCFF043HLE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF084HNC bam unfiltered alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF171NPB, ENCFF643CGH, ENCFF655DBC 4371531302 ENCODE Processing Pipeline 0d70df96f633ae4eee4d73c1d16b9a25 https://www.encodeproject.org/files/ENCFF084HNC/@@download/ENCFF084HNC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF904GDU bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF070HUC, ENCFF643CGH, ENCFF791KUN 4174781595 ENCODE Processing Pipeline c8ac5346f39996abc997ca4fd2e6889c https://www.encodeproject.org/files/ENCFF904GDU/@@download/ENCFF904GDU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF926QFI bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF171NPB, ENCFF643CGH, ENCFF655DBC 3805870847 ENCODE Processing Pipeline 6639c3eeca2f3bd2c2f709641d7239f0 https://www.encodeproject.org/files/ENCFF926QFI/@@download/ENCFF926QFI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF502XEG bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF070HUC, ENCFF791KUN, ENCFF807MUK 4172658572 ENCODE Processing Pipeline cdc727f919461a31fa484f9a2c32c918 https://www.encodeproject.org/files/ENCFF502XEG/@@download/ENCFF502XEG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF648FIZ bam unfiltered alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF171NPB, ENCFF655DBC, ENCFF807MUK 4366690021 ENCODE Processing Pipeline 0accaba4778ed2f91975c2f40c0b5b6e https://www.encodeproject.org/files/ENCFF648FIZ/@@download/ENCFF648FIZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF582WWH bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF171NPB, ENCFF655DBC, ENCFF807MUK 3804532027 ENCODE Processing Pipeline 7676473b47db1c176520fbd71c18d690 https://www.encodeproject.org/files/ENCFF582WWH/@@download/ENCFF582WWH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF891TSA bigWig signal p-value ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF904GDU 1399195494 ENCODE Processing Pipeline 056138f5eb3f24483851051d94428f9f https://www.encodeproject.org/files/ENCFF891TSA/@@download/ENCFF891TSA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF223DGX bigWig fold change over control ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF926QFI 1307776991 ENCODE Processing Pipeline f9fdf520db22cafc01f119fcf47a3203 https://www.encodeproject.org/files/ENCFF223DGX/@@download/ENCFF223DGX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF485WHZ bigWig signal p-value ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF582WWH 1261593397 ENCODE Processing Pipeline ce7cc956dcd701a9bf5eb62c6eb1bc9a https://www.encodeproject.org/files/ENCFF485WHZ/@@download/ENCFF485WHZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF910XOB bigWig signal p-value ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF926QFI 1159986650 ENCODE Processing Pipeline 44f0d7063619a13a2598a43bcebea0cf https://www.encodeproject.org/files/ENCFF910XOB/@@download/ENCFF910XOB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF703QCR bigWig signal p-value ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF904GDU, ENCFF926QFI 1897690832 ENCODE Processing Pipeline d854d3048de6e388907ddfcb6d063515 https://www.encodeproject.org/files/ENCFF703QCR/@@download/ENCFF703QCR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF529NVL bigWig signal p-value ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF502XEG 1471540301 ENCODE Processing Pipeline 84ca78c93c093dabfa893c1ab52262d7 https://www.encodeproject.org/files/ENCFF529NVL/@@download/ENCFF529NVL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF405LEQ bigWig fold change over control ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF904GDU 1391188064 ENCODE Processing Pipeline 86b0c4eac05ba2308a80c28a81b8b448 https://www.encodeproject.org/files/ENCFF405LEQ/@@download/ENCFF405LEQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF744MWL bigBed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF040TAF 13491953 ENCODE Processing Pipeline d72cef9df919fd90b9de0d0ce344e388 https://www.encodeproject.org/files/ENCFF744MWL/@@download/ENCFF744MWL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF550LEW bed narrowPeak conservative idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF040TAF, ENCFF419RSJ, ENCFF515CZK, ENCFF921YBI 419004 ENCODE Processing Pipeline b60ee2be04a4e37ebf0ddc1a5a54d3fc https://www.encodeproject.org/files/ENCFF550LEW/@@download/ENCFF550LEW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF052QYR bigWig fold change over control ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF904GDU, ENCFF926QFI 1903511242 ENCODE Processing Pipeline 6a050fa230a6e603ad79e651e9cb0e88 https://www.encodeproject.org/files/ENCFF052QYR/@@download/ENCFF052QYR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF040TAF bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF926QFI 6899373 ENCODE Processing Pipeline b625d94b1c28997942b75ee947f2ff23 https://www.encodeproject.org/files/ENCFF040TAF/@@download/ENCFF040TAF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF952WWS bigBed narrowPeak optimal idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF815ZYA 1019243 ENCODE Processing Pipeline 89560d4f24a8dd228c47381b48445014 https://www.encodeproject.org/files/ENCFF952WWS/@@download/ENCFF952WWS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF055CFY bigBed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF515CZK 13425173 ENCODE Processing Pipeline e8a95e3827c22f83ed0ead53e19c486f https://www.encodeproject.org/files/ENCFF055CFY/@@download/ENCFF055CFY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF424NDV bigBed narrowPeak conservative idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF550LEW 917845 ENCODE Processing Pipeline 57138f5b6b8ee376b03e3e82c7ae703d https://www.encodeproject.org/files/ENCFF424NDV/@@download/ENCFF424NDV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF815ZYA bed narrowPeak optimal idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF040TAF, ENCFF419RSJ, ENCFF515CZK, ENCFF921YBI 480708 ENCODE Processing Pipeline 240ac9efe58960ce8869d9987788ecf8 https://www.encodeproject.org/files/ENCFF815ZYA/@@download/ENCFF815ZYA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF921YBI bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF904GDU 6900236 ENCODE Processing Pipeline 4e9b630fa733f3386375777afbc7a1e3 https://www.encodeproject.org/files/ENCFF921YBI/@@download/ENCFF921YBI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF515CZK bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF904GDU, ENCFF926QFI 7236047 ENCODE Processing Pipeline f17000dab2a0ccd455e49fa9b362af8d https://www.encodeproject.org/files/ENCFF515CZK/@@download/ENCFF515CZK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF174NXK bigBed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF921YBI 13510911 ENCODE Processing Pipeline e68d3cf965d821a6e898b08d802ac369 https://www.encodeproject.org/files/ENCFF174NXK/@@download/ENCFF174NXK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF925XUM bigWig fold change over control ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF502XEG, ENCFF582WWH 1903173517 ENCODE Processing Pipeline e1c22601ac3cf4de836ac837fab7ad06 https://www.encodeproject.org/files/ENCFF925XUM/@@download/ENCFF925XUM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF047DVP bigWig signal p-value ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF502XEG, ENCFF582WWH 1897143194 ENCODE Processing Pipeline a4e2b5b207e86dc8c116df230f886ac8 https://www.encodeproject.org/files/ENCFF047DVP/@@download/ENCFF047DVP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF983JKR bigWig fold change over control ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF582WWH 1306246251 ENCODE Processing Pipeline 88eb00b8617c42c789eb103fa4d9e53e https://www.encodeproject.org/files/ENCFF983JKR/@@download/ENCFF983JKR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF031HWB bigBed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF147KIZ 13503828 ENCODE Processing Pipeline acc78e245806da68cfcc89830fc2ae33 https://www.encodeproject.org/files/ENCFF031HWB/@@download/ENCFF031HWB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF143AEE bigWig fold change over control ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF502XEG 1375724599 ENCODE Processing Pipeline b686073f5e9b0ca90f6547b1cdd271c7 https://www.encodeproject.org/files/ENCFF143AEE/@@download/ENCFF143AEE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF540BKX bigBed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF601FPT 13414189 ENCODE Processing Pipeline f999ca6cd44c93d5c3b3c188c22c9977 https://www.encodeproject.org/files/ENCFF540BKX/@@download/ENCFF540BKX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF452AVX bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF582WWH 6896578 ENCODE Processing Pipeline f3a3495020e64d1b997d09cb3ed37b5f https://www.encodeproject.org/files/ENCFF452AVX/@@download/ENCFF452AVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF601FPT bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF502XEG, ENCFF582WWH 7236317 ENCODE Processing Pipeline e44f8857d07fd10e361688c865805960 https://www.encodeproject.org/files/ENCFF601FPT/@@download/ENCFF601FPT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF681RXN bigBed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF452AVX 13477888 ENCODE Processing Pipeline ac5f80de743e0196ee0edd74f678dcb6 https://www.encodeproject.org/files/ENCFF681RXN/@@download/ENCFF681RXN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF842UVS bed narrowPeak conservative idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF147KIZ, ENCFF452AVX, ENCFF601FPT 418650 ENCODE Processing Pipeline 3f1aa7c8e0be3b72bcc26135fd4c7b07 https://www.encodeproject.org/files/ENCFF842UVS/@@download/ENCFF842UVS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF147KIZ bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF502XEG 6907242 ENCODE Processing Pipeline abec0331a6adcdacce036eb195104bed https://www.encodeproject.org/files/ENCFF147KIZ/@@download/ENCFF147KIZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF694AJH bigBed narrowPeak conservative idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF842UVS 914744 ENCODE Processing Pipeline 042d2e4bdc3ed16d1a156f41279ad61f https://www.encodeproject.org/files/ENCFF694AJH/@@download/ENCFF694AJH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF609FKG bigBed narrowPeak optimal idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF134HPR 1007146 ENCODE Processing Pipeline 709634dd6c14ac0ab57c874c56ecac65 https://www.encodeproject.org/files/ENCFF609FKG/@@download/ENCFF609FKG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF134HPR bed narrowPeak optimal idr thresholded peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF147KIZ, ENCFF452AVX, ENCFF601FPT 473833 ENCODE Processing Pipeline 0ea3218c0f208b82b06b37f1883d4e0e https://www.encodeproject.org/files/ENCFF134HPR/@@download/ENCFF134HPR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF657KNO fastq reads ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 1 36 paired-ended 1 ENCFF478TYW 994625908 Bradley Bernstein, Broad 0e81d23a42f30442e1c5772b8410568c https://www.encodeproject.org/files/ENCFF657KNO/@@download/ENCFF657KNO.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent control run_type, inconsistent control read length, antibody characterized with exemption mismatched status, experiment not submitted to GEO ENCFF478TYW fastq reads ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 1 25 paired-ended 2 ENCFF657KNO 777763407 Bradley Bernstein, Broad 6e1ee79c445f447f6ded2ad298dfde4f https://www.encodeproject.org/files/ENCFF478TYW/@@download/ENCFF478TYW.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF465MKE fastq reads ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 1 25 paired-ended 2 ENCFF144RFX 852854046 Bradley Bernstein, Broad 17409c1aa939f2e48cec6cd8aaf45ce0 https://www.encodeproject.org/files/ENCFF465MKE/@@download/ENCFF465MKE.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF144RFX fastq reads ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 1 36 paired-ended 1 ENCFF465MKE 1094305894 Bradley Bernstein, Broad 30311cc96c1cc807abb9b59d00a11fe2 https://www.encodeproject.org/files/ENCFF144RFX/@@download/ENCFF144RFX.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF148FEC bam unfiltered alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 36 ENCFF657KNO, ENCFF807MUK 1380505614 ENCODE Processing Pipeline 3c3c0639b56912a174e6eb715adafe1a https://www.encodeproject.org/files/ENCFF148FEC/@@download/ENCFF148FEC.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF978GRX bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 36 ENCFF657KNO, ENCFF807MUK 874033145 ENCODE Processing Pipeline 6d1f7ec354ad06e47c3edadbfc725de1 https://www.encodeproject.org/files/ENCFF978GRX/@@download/ENCFF978GRX.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF667KQT bam unfiltered alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 36 ENCFF144RFX, ENCFF807MUK 1610605934 ENCODE Processing Pipeline 340f262f3a4df9d97dc8d21e27bc7f99 https://www.encodeproject.org/files/ENCFF667KQT/@@download/ENCFF667KQT.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF345ODT bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 36 ENCFF144RFX, ENCFF807MUK 1138142570 ENCODE Processing Pipeline 1c8fe76e6d6f6e1faddded2030c0ec97 https://www.encodeproject.org/files/ENCFF345ODT/@@download/ENCFF345ODT.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF505ODA bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 36 ENCFF144RFX, ENCFF643CGH 1137695032 ENCODE Processing Pipeline bcfabf4934b6645d4f065e2eddb4fcee https://www.encodeproject.org/files/ENCFF505ODA/@@download/ENCFF505ODA.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF954BHM bam unfiltered alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 36 ENCFF643CGH, ENCFF657KNO 1388891480 ENCODE Processing Pipeline 9f536a5c876ebeb6d4530821650dac81 https://www.encodeproject.org/files/ENCFF954BHM/@@download/ENCFF954BHM.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF078OAW bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 36 ENCFF643CGH, ENCFF657KNO 873641972 ENCODE Processing Pipeline abd0f35a426c8b4c9b9bc89a8e3259cc https://www.encodeproject.org/files/ENCFF078OAW/@@download/ENCFF078OAW.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF101UCN bam unfiltered alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 36 ENCFF144RFX, ENCFF643CGH 1622050687 ENCODE Processing Pipeline 86f91b7f0e2b632e6d23d7a99d51a24a https://www.encodeproject.org/files/ENCFF101UCN/@@download/ENCFF101UCN.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF304RVB bigWig fold change over control ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF978GRX 1042318924 ENCODE Processing Pipeline 8decd619fc70c48f27a9c463a7c2bc34 https://www.encodeproject.org/files/ENCFF304RVB/@@download/ENCFF304RVB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF305XPZ bigWig signal p-value ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL 1137756741 ENCODE Processing Pipeline 0f61cf27616776ca00c7cd6521e773c9 https://www.encodeproject.org/files/ENCFF305XPZ/@@download/ENCFF305XPZ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF967JEC bigWig fold change over control ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL, ENCFF978GRX 1590810921 ENCODE Processing Pipeline 0f1e3dc2e80040933cf55dc3bbb96bcc https://www.encodeproject.org/files/ENCFF967JEC/@@download/ENCFF967JEC.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF421UAV bigBed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF661ZVZ 12794290 ENCODE Processing Pipeline 3b8474468b31da0156fd448dcb61bb8c https://www.encodeproject.org/files/ENCFF421UAV/@@download/ENCFF421UAV.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF833QWU bigWig signal p-value ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF978GRX 1109471008 ENCODE Processing Pipeline b8bbe8f4ca86bebdee909ae40d64378c https://www.encodeproject.org/files/ENCFF833QWU/@@download/ENCFF833QWU.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF401LVH bigWig signal p-value ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL, ENCFF978GRX 1372561449 ENCODE Processing Pipeline 78bc3f41cef1df2a879a2c3b1181342d https://www.encodeproject.org/files/ENCFF401LVH/@@download/ENCFF401LVH.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF714JWU bigWig fold change over control ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL 1262550462 ENCODE Processing Pipeline 7f1eb497a9e7263732435b7b332e5e9a https://www.encodeproject.org/files/ENCFF714JWU/@@download/ENCFF714JWU.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF661ZVZ bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF978GRX 7118209 ENCODE Processing Pipeline a9f82bcd6d8f0609a51d9a8837db3803 https://www.encodeproject.org/files/ENCFF661ZVZ/@@download/ENCFF661ZVZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF077UDW bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL 7016741 ENCODE Processing Pipeline b517623b44ab8c822c722316791d4787 https://www.encodeproject.org/files/ENCFF077UDW/@@download/ENCFF077UDW.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF480OLQ bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL, ENCFF978GRX 7264533 ENCODE Processing Pipeline b2ee0c389bfc0025c1fa12a67c48f432 https://www.encodeproject.org/files/ENCFF480OLQ/@@download/ENCFF480OLQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF175XNK bigBed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF480OLQ 12815473 ENCODE Processing Pipeline ec1d3d6519c31224e77ec06c3d7a5c36 https://www.encodeproject.org/files/ENCFF175XNK/@@download/ENCFF175XNK.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF243FMU bed narrowPeak conservative idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF001TDO, ENCFF077UDW, ENCFF480OLQ, ENCFF661ZVZ 205499 ENCODE Processing Pipeline 90a8f4b61b4e8057e3f4f1b33cea8f0b https://www.encodeproject.org/files/ENCFF243FMU/@@download/ENCFF243FMU.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF120BLM bigBed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF077UDW 13206378 ENCODE Processing Pipeline 1bef0d153cd64c7278136984a8a2de1d https://www.encodeproject.org/files/ENCFF120BLM/@@download/ENCFF120BLM.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF115ROR bigBed narrowPeak conservative idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF243FMU 617322 ENCODE Processing Pipeline 430798a61074ab9a0dffabe062f0d78a https://www.encodeproject.org/files/ENCFF115ROR/@@download/ENCFF115ROR.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF805ACY bigBed narrowPeak optimal idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF880BTU 802835 ENCODE Processing Pipeline 7cd45f76baf01083222caf34a804167b https://www.encodeproject.org/files/ENCFF805ACY/@@download/ENCFF805ACY.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF880BTU bed narrowPeak optimal idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF001TDO, ENCFF077UDW, ENCFF480OLQ, ENCFF661ZVZ 286764 ENCODE Processing Pipeline 4afe059a7155dc6fadc302a1f266a711 https://www.encodeproject.org/files/ENCFF880BTU/@@download/ENCFF880BTU.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF598KVP bigWig fold change over control ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF078OAW, ENCFF645CCA, ENCFF943MYJ 1028969007 ENCODE Processing Pipeline c7b462a6a61677799efd1beb8677aa1f https://www.encodeproject.org/files/ENCFF598KVP/@@download/ENCFF598KVP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF491JBG bigWig signal p-value ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF078OAW, ENCFF505ODA, ENCFF645CCA, ENCFF943MYJ 1635688263 ENCODE Processing Pipeline 1ad12eb64f0e17a8d7b0617b72dd5116 https://www.encodeproject.org/files/ENCFF491JBG/@@download/ENCFF491JBG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF013JUX bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF078OAW, ENCFF505ODA, ENCFF645CCA, ENCFF943MYJ 7262098 ENCODE Processing Pipeline 83f0f35b8f74ac40c6252289c2aa2586 https://www.encodeproject.org/files/ENCFF013JUX/@@download/ENCFF013JUX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF677HVO bigWig signal p-value ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF078OAW, ENCFF645CCA, ENCFF943MYJ 1121743102 ENCODE Processing Pipeline 9060399ddfc4eb339e17afcbcd74b01e https://www.encodeproject.org/files/ENCFF677HVO/@@download/ENCFF677HVO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF062LOL bigWig signal p-value ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF505ODA, ENCFF645CCA, ENCFF943MYJ 1117847621 ENCODE Processing Pipeline 95c480abca70ce82178d2ebb66ffec04 https://www.encodeproject.org/files/ENCFF062LOL/@@download/ENCFF062LOL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF362EZG bigBed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF129MJY 12790514 ENCODE Processing Pipeline 2c8e78959d1e7a5e92276af580ac96c6 https://www.encodeproject.org/files/ENCFF362EZG/@@download/ENCFF362EZG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF331YGO bigWig fold change over control ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF505ODA, ENCFF645CCA, ENCFF943MYJ 1231817813 ENCODE Processing Pipeline bfe280df66cc8a635f24a42ae1ffa2a3 https://www.encodeproject.org/files/ENCFF331YGO/@@download/ENCFF331YGO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF129MJY bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF078OAW, ENCFF645CCA, ENCFF943MYJ 7115895 ENCODE Processing Pipeline 28ce7300b0cb3536e4056042ad71e62a https://www.encodeproject.org/files/ENCFF129MJY/@@download/ENCFF129MJY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF093CHX bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF505ODA, ENCFF645CCA, ENCFF943MYJ 7022742 ENCODE Processing Pipeline 66705ff256c47cfe07f55e13a682ce8a https://www.encodeproject.org/files/ENCFF093CHX/@@download/ENCFF093CHX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF821XXG bigWig fold change over control ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF078OAW, ENCFF505ODA, ENCFF645CCA, ENCFF943MYJ 1581183540 ENCODE Processing Pipeline 0870f25161fb6d9265c714cf305a6d1c https://www.encodeproject.org/files/ENCFF821XXG/@@download/ENCFF821XXG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF377DMI bigBed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF093CHX 13202720 ENCODE Processing Pipeline 7555219f1e833535b0b6da6e6d34c2df https://www.encodeproject.org/files/ENCFF377DMI/@@download/ENCFF377DMI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF561BPS bigBed narrowPeak conservative idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF971PRU 618727 ENCODE Processing Pipeline 131943089ab4bdf2b7e6366d2d182bd7 https://www.encodeproject.org/files/ENCFF561BPS/@@download/ENCFF561BPS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF705AOF bigBed narrowPeak optimal idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF334HKG 821787 ENCODE Processing Pipeline 1de90c2729a6d6bdf3f0cfffc314ea3e https://www.encodeproject.org/files/ENCFF705AOF/@@download/ENCFF705AOF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF606YLA bigBed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF013JUX 12825156 ENCODE Processing Pipeline d80c40e8d23e631d1ebeb4a963b44a2e https://www.encodeproject.org/files/ENCFF606YLA/@@download/ENCFF606YLA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF334HKG bed narrowPeak optimal idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF013JUX, ENCFF093CHX, ENCFF129MJY, ENCFF419RSJ 296117 ENCODE Processing Pipeline 8b8744747e3465f29d6b8f3d9cede86b https://www.encodeproject.org/files/ENCFF334HKG/@@download/ENCFF334HKG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF971PRU bed narrowPeak conservative idr thresholded peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF013JUX, ENCFF093CHX, ENCFF129MJY, ENCFF419RSJ 205596 ENCODE Processing Pipeline 98dcdd5c9ffe6410b2a65803063518c8 https://www.encodeproject.org/files/ENCFF971PRU/@@download/ENCFF971PRU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF394DER fastq reads ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF456OPD 1455728305 Michael Snyder, Stanford ae2e1e7c1d1b4dfe183801812f9fc346 SRA:SRR5111101 https://www.encodeproject.org/files/ENCFF394DER/@@download/ENCFF394DER.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF853FSA fastq reads ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF217XYK 1902088247 Michael Snyder, Stanford 86a87083f552935d63cc28d6848aff3c SRA:SRR5111102 https://www.encodeproject.org/files/ENCFF853FSA/@@download/ENCFF853FSA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF217XYK fastq reads ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF853FSA 1930773759 Michael Snyder, Stanford 65c2ddd6a28a472cfadc51ea36dc8a57 SRA:SRR5111102 https://www.encodeproject.org/files/ENCFF217XYK/@@download/ENCFF217XYK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF456OPD fastq reads ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF394DER 1520355962 Michael Snyder, Stanford cd9c7f500281cb60682b3ba496406661 SRA:SRR5111101 https://www.encodeproject.org/files/ENCFF456OPD/@@download/ENCFF456OPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF109DHA bam unfiltered alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF394DER, ENCFF456OPD, ENCFF807MUK 3399397290 ENCODE Processing Pipeline 153be0ae10d6d76abc15a2498422b5d4 https://www.encodeproject.org/files/ENCFF109DHA/@@download/ENCFF109DHA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF033ZHU bam unfiltered alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF217XYK, ENCFF643CGH, ENCFF853FSA 4337102367 ENCODE Processing Pipeline b4fa34799c9797999b2451e0a01e21e2 https://www.encodeproject.org/files/ENCFF033ZHU/@@download/ENCFF033ZHU.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF152RRH bam unfiltered alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF217XYK, ENCFF807MUK, ENCFF853FSA 4330886714 ENCODE Processing Pipeline cbda88982beff5e96a88113fb9c2df62 https://www.encodeproject.org/files/ENCFF152RRH/@@download/ENCFF152RRH.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF920KXH bam unfiltered alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF394DER, ENCFF456OPD, ENCFF643CGH 3401869961 ENCODE Processing Pipeline 90d947c564b700c9f5920f45f39bb1d9 https://www.encodeproject.org/files/ENCFF920KXH/@@download/ENCFF920KXH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF490FAT bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF394DER, ENCFF456OPD, ENCFF807MUK 2780047402 ENCODE Processing Pipeline 327d8bada50428b35682c3899d10e28e https://www.encodeproject.org/files/ENCFF490FAT/@@download/ENCFF490FAT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF130UZR bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF394DER, ENCFF456OPD, ENCFF643CGH 2781340543 ENCODE Processing Pipeline 5287aaa8b15422400d368eb9395333ef https://www.encodeproject.org/files/ENCFF130UZR/@@download/ENCFF130UZR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF277EIF bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF217XYK, ENCFF807MUK, ENCFF853FSA 3861142139 ENCODE Processing Pipeline a2c5e048e2a8c70cb54a6b40f742f909 https://www.encodeproject.org/files/ENCFF277EIF/@@download/ENCFF277EIF.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF126ZOC bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF217XYK, ENCFF643CGH, ENCFF853FSA 3862122632 ENCODE Processing Pipeline 61a8e5134bcabb01da2f1a90c9b97db6 https://www.encodeproject.org/files/ENCFF126ZOC/@@download/ENCFF126ZOC.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF191FSK bigWig signal p-value ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF277EIF 1158314892 ENCODE Processing Pipeline 315c2126d5e314037352d4905f99554a https://www.encodeproject.org/files/ENCFF191FSK/@@download/ENCFF191FSK.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF106NKC bigWig signal p-value ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF490FAT 1190724903 ENCODE Processing Pipeline 0883375407bfb6371be920d177f7575c https://www.encodeproject.org/files/ENCFF106NKC/@@download/ENCFF106NKC.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF224TTP bigWig signal p-value ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF277EIF, ENCFF490FAT 1394154281 ENCODE Processing Pipeline 3b5d0c7f1aed2116112def1c6e179651 https://www.encodeproject.org/files/ENCFF224TTP/@@download/ENCFF224TTP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF433PBN bigWig fold change over control ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF490FAT 1040601879 ENCODE Processing Pipeline bf8b49b6d6d5347109f75719857960b3 https://www.encodeproject.org/files/ENCFF433PBN/@@download/ENCFF433PBN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF725BKF bigWig fold change over control ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF277EIF 1321086890 ENCODE Processing Pipeline f4938a2700eea5da1ab85fc1b0a7f0b7 https://www.encodeproject.org/files/ENCFF725BKF/@@download/ENCFF725BKF.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF982QVN bigWig fold change over control ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF277EIF, ENCFF490FAT 1728595696 ENCODE Processing Pipeline e4ddbee53ae3a032e6573faa18590950 https://www.encodeproject.org/files/ENCFF982QVN/@@download/ENCFF982QVN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF243GQS bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF277EIF 6533063 ENCODE Processing Pipeline 5eca0798704b23154339484c30417ed2 https://www.encodeproject.org/files/ENCFF243GQS/@@download/ENCFF243GQS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF543MRW bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF490FAT 6045732 ENCODE Processing Pipeline 460cc347ecf252bfe937e05475974893 https://www.encodeproject.org/files/ENCFF543MRW/@@download/ENCFF543MRW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF815UHN bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF277EIF, ENCFF490FAT 6859297 ENCODE Processing Pipeline d633eee3d29f90df08ca83588faf523d https://www.encodeproject.org/files/ENCFF815UHN/@@download/ENCFF815UHN.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF238PEM bigBed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF243GQS 11298686 ENCODE Processing Pipeline 7540ca09258e16fe7f9d62da9e179ed7 https://www.encodeproject.org/files/ENCFF238PEM/@@download/ENCFF238PEM.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF547XBT bigBed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF543MRW 11426939 ENCODE Processing Pipeline 9ffc77f713e65ecca7c6e79e4cb76eb2 https://www.encodeproject.org/files/ENCFF547XBT/@@download/ENCFF547XBT.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF461WTB bed narrowPeak conservative idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF243GQS, ENCFF543MRW, ENCFF815UHN 32715 ENCODE Processing Pipeline 2f25c0ff70ad934f8f3a52b0f13da02d https://www.encodeproject.org/files/ENCFF461WTB/@@download/ENCFF461WTB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF686BOK bigBed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF815UHN 11172391 ENCODE Processing Pipeline a8acbd46c39226cece9c2581bf4067a8 https://www.encodeproject.org/files/ENCFF686BOK/@@download/ENCFF686BOK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF824SRC bed narrowPeak optimal idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF243GQS, ENCFF543MRW, ENCFF815UHN 53995 ENCODE Processing Pipeline 5bcf80ee6cae0c1843d6c295b2e476d8 https://www.encodeproject.org/files/ENCFF824SRC/@@download/ENCFF824SRC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF905MAT bigBed narrowPeak conservative idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF461WTB 106332 ENCODE Processing Pipeline e72f01af35f58b96959ce7fbf137850f https://www.encodeproject.org/files/ENCFF905MAT/@@download/ENCFF905MAT.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF041ITK bigBed narrowPeak optimal idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF824SRC 138246 ENCODE Processing Pipeline 3a19764e97523545f5842cfc1c39cacf https://www.encodeproject.org/files/ENCFF041ITK/@@download/ENCFF041ITK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF781DHK bigWig signal p-value ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF126ZOC 1232463062 ENCODE Processing Pipeline 29964075fcc249b787d5daf1d9baa600 https://www.encodeproject.org/files/ENCFF781DHK/@@download/ENCFF781DHK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF451AFV bigWig signal p-value ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130UZR 1188838569 ENCODE Processing Pipeline f1359dec3516de895167e3440d97b8d5 https://www.encodeproject.org/files/ENCFF451AFV/@@download/ENCFF451AFV.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF035CLX bigWig signal p-value ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126ZOC, ENCFF130UZR 1516698594 ENCODE Processing Pipeline 5693d4d54a4ce21b99292a929df8ed98 https://www.encodeproject.org/files/ENCFF035CLX/@@download/ENCFF035CLX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF345BLB bigWig fold change over control ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF126ZOC 1308882783 ENCODE Processing Pipeline b0a7ce568ed14a304444131d5ae26f28 https://www.encodeproject.org/files/ENCFF345BLB/@@download/ENCFF345BLB.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF679GTR bigWig fold change over control ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130UZR 1060707477 ENCODE Processing Pipeline 8079f21def0010405c9610a3f966c3af https://www.encodeproject.org/files/ENCFF679GTR/@@download/ENCFF679GTR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF664AMM bigWig fold change over control ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126ZOC, ENCFF130UZR 1739636650 ENCODE Processing Pipeline edec798ffcf11d36acab0ffd08df0613 https://www.encodeproject.org/files/ENCFF664AMM/@@download/ENCFF664AMM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF778WTZ bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF126ZOC 6373273 ENCODE Processing Pipeline 41ac417deed16b56e34a8d3bba328fcb https://www.encodeproject.org/files/ENCFF778WTZ/@@download/ENCFF778WTZ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF275GRG bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130UZR 5894362 ENCODE Processing Pipeline 55dc02f7892381f5fba60bfb114f00c4 https://www.encodeproject.org/files/ENCFF275GRG/@@download/ENCFF275GRG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF551TFE bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126ZOC, ENCFF130UZR 6754977 ENCODE Processing Pipeline e0e65fcdcb526a81f7acfe5f8ca5b9c9 https://www.encodeproject.org/files/ENCFF551TFE/@@download/ENCFF551TFE.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF025VUV bigBed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF778WTZ 11301583 ENCODE Processing Pipeline 12d665986450de622866ae5abf7c6277 https://www.encodeproject.org/files/ENCFF025VUV/@@download/ENCFF025VUV.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF075BGD bigBed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF275GRG 11425588 ENCODE Processing Pipeline 545b6df8ba6b772a998f1c201e3dcd35 https://www.encodeproject.org/files/ENCFF075BGD/@@download/ENCFF075BGD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF622INR bigBed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF551TFE 11177408 ENCODE Processing Pipeline bce0ac0135d8fde41195103cb8f93fcf https://www.encodeproject.org/files/ENCFF622INR/@@download/ENCFF622INR.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF451KPE bed narrowPeak conservative idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF275GRG, ENCFF419RSJ, ENCFF551TFE, ENCFF778WTZ 33543 ENCODE Processing Pipeline 8110522f9192bef038481ea4c23337f4 https://www.encodeproject.org/files/ENCFF451KPE/@@download/ENCFF451KPE.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF978XMG bed narrowPeak optimal idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF275GRG, ENCFF419RSJ, ENCFF551TFE, ENCFF778WTZ 54989 ENCODE Processing Pipeline c41156bcd735ea11328b6b8ed6455d87 https://www.encodeproject.org/files/ENCFF978XMG/@@download/ENCFF978XMG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF577ZRL bigBed narrowPeak conservative idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF451KPE 108012 ENCODE Processing Pipeline 80fb5e645b16e44c14867ae579e27d88 https://www.encodeproject.org/files/ENCFF577ZRL/@@download/ENCFF577ZRL.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF572HBT bigBed narrowPeak optimal idr thresholded peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF978XMG 140313 ENCODE Processing Pipeline ab5f41f9826e9a766fe571485de6c668 https://www.encodeproject.org/files/ENCFF572HBT/@@download/ENCFF572HBT.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF192LSU fastq reads ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF261LTR 2476162932 Michael Snyder, Stanford dbc831b8077f924902bc5d29a6e11212 SRA:SRR6212648 https://www.encodeproject.org/files/ENCFF192LSU/@@download/ENCFF192LSU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF233DTH fastq reads ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF650VLS 4247147208 Michael Snyder, Stanford a531830b9d31ee18cc5fe6fa21169eb0 SRA:SRR6212649 https://www.encodeproject.org/files/ENCFF233DTH/@@download/ENCFF233DTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF261LTR fastq reads ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF192LSU 2575483992 Michael Snyder, Stanford 961e6eb278dde716a05e15cd2ad01721 SRA:SRR6212648 https://www.encodeproject.org/files/ENCFF261LTR/@@download/ENCFF261LTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF650VLS fastq reads ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF233DTH 4293618529 Michael Snyder, Stanford aa478f288754a1d5b7a01dd528148e1a SRA:SRR6212649 https://www.encodeproject.org/files/ENCFF650VLS/@@download/ENCFF650VLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF921SQY bam unfiltered alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF192LSU, ENCFF261LTR, ENCFF643CGH 5615045791 ENCODE Processing Pipeline 323ca2935294638a0091fbcf5c5708bf https://www.encodeproject.org/files/ENCFF921SQY/@@download/ENCFF921SQY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF855AYX bam unfiltered alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF233DTH, ENCFF650VLS, ENCFF807MUK 8643522301 ENCODE Processing Pipeline 2ece6979c71f60fbb84562bf652949a8 https://www.encodeproject.org/files/ENCFF855AYX/@@download/ENCFF855AYX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF482DIU bam unfiltered alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF192LSU, ENCFF261LTR, ENCFF807MUK 5609677785 ENCODE Processing Pipeline 815a27deb90db0af567d5362c842c8e8 https://www.encodeproject.org/files/ENCFF482DIU/@@download/ENCFF482DIU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF420VDR bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF192LSU, ENCFF261LTR, ENCFF807MUK 4673872870 ENCODE Processing Pipeline 6d51cd6a60704932352202e93530d1f0 https://www.encodeproject.org/files/ENCFF420VDR/@@download/ENCFF420VDR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF242MGC bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF192LSU, ENCFF261LTR, ENCFF643CGH 4675090553 ENCODE Processing Pipeline 920b59a0af0edf5d5964d5f44a0ec63a https://www.encodeproject.org/files/ENCFF242MGC/@@download/ENCFF242MGC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF352GCO bam unfiltered alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF233DTH, ENCFF643CGH, ENCFF650VLS 8656648678 ENCODE Processing Pipeline d011b380434b27be0579c4166717415f https://www.encodeproject.org/files/ENCFF352GCO/@@download/ENCFF352GCO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF402MTF bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF233DTH, ENCFF650VLS, ENCFF807MUK 6972432935 ENCODE Processing Pipeline 94eaef8245654e104317f42d71a086bc https://www.encodeproject.org/files/ENCFF402MTF/@@download/ENCFF402MTF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF599QHU bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF233DTH, ENCFF643CGH, ENCFF650VLS 6971307495 ENCODE Processing Pipeline 1582f50aa76ff004aceaf3574acaeb9e https://www.encodeproject.org/files/ENCFF599QHU/@@download/ENCFF599QHU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF216VHF bigWig fold change over control ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF420VDR 1382454041 ENCODE Processing Pipeline 5f5affc4e991235e5e771f8ad3a7b81d https://www.encodeproject.org/files/ENCFF216VHF/@@download/ENCFF216VHF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF921BXR bigWig signal p-value ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF402MTF 1468208936 ENCODE Processing Pipeline e6bb970b3efacfaed657c9af74227917 https://www.encodeproject.org/files/ENCFF921BXR/@@download/ENCFF921BXR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF542ZTE bigWig signal p-value ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF402MTF, ENCFF420VDR 1983333702 ENCODE Processing Pipeline 37042f7bd0cc1a6eec0aab208f72640f https://www.encodeproject.org/files/ENCFF542ZTE/@@download/ENCFF542ZTE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF477FDL bigWig signal p-value ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF420VDR 1368838412 ENCODE Processing Pipeline c7ab67b77025bb037a447398a84e6324 https://www.encodeproject.org/files/ENCFF477FDL/@@download/ENCFF477FDL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF168QTX bigWig fold change over control ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF402MTF 1632734144 ENCODE Processing Pipeline 8b75dc070fab67407d8cbb9024e48ab4 https://www.encodeproject.org/files/ENCFF168QTX/@@download/ENCFF168QTX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF227AWC bigWig signal p-value ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF242MGC 1181443652 ENCODE Processing Pipeline 65dd481154c4d12b3a80f02d10f12ccc https://www.encodeproject.org/files/ENCFF227AWC/@@download/ENCFF227AWC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF887NBO bigWig fold change over control ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF242MGC 1385314126 ENCODE Processing Pipeline f0001042acdc805371985ac6d2623647 https://www.encodeproject.org/files/ENCFF887NBO/@@download/ENCFF887NBO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF166UCQ bigWig signal p-value ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF599QHU 1425947218 ENCODE Processing Pipeline a74dde5c1c62e38a68ca9fdfabf1b351 https://www.encodeproject.org/files/ENCFF166UCQ/@@download/ENCFF166UCQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF906ALY bigWig fold change over control ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF402MTF, ENCFF420VDR 2093159039 ENCODE Processing Pipeline 9effd249e4a945797bada3ef52a761f4 https://www.encodeproject.org/files/ENCFF906ALY/@@download/ENCFF906ALY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF927DPE bigBed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF679SSP 13414282 ENCODE Processing Pipeline c2cc65de0a03709d2c166194b4249c21 https://www.encodeproject.org/files/ENCFF927DPE/@@download/ENCFF927DPE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF474NNM bigWig signal p-value ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF242MGC, ENCFF599QHU 1984653268 ENCODE Processing Pipeline 8d12209a98018a66a604aa9eed866008 https://www.encodeproject.org/files/ENCFF474NNM/@@download/ENCFF474NNM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF790MTN bigWig fold change over control ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF599QHU 1636920519 ENCODE Processing Pipeline 2c2418de8770566c2a9adfa0efb9c605 https://www.encodeproject.org/files/ENCFF790MTN/@@download/ENCFF790MTN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF223BAL bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF599QHU 6797540 ENCODE Processing Pipeline a14f9e12fb15ad68f569b00d68234893 https://www.encodeproject.org/files/ENCFF223BAL/@@download/ENCFF223BAL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF700EGE bigBed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF223BAL 11280886 ENCODE Processing Pipeline bf7eb9657f42c259fffc4627171a33e4 https://www.encodeproject.org/files/ENCFF700EGE/@@download/ENCFF700EGE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF439FBA bigWig fold change over control ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF242MGC, ENCFF599QHU 2094690117 ENCODE Processing Pipeline 3b464e96eade94925b75daeb04d0cbe3 https://www.encodeproject.org/files/ENCFF439FBA/@@download/ENCFF439FBA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF647WLJ bigBed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF865RNJ 13353155 ENCODE Processing Pipeline 35d12bc71b925857a79f88deaa616bae https://www.encodeproject.org/files/ENCFF647WLJ/@@download/ENCFF647WLJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF315FFJ bed narrowPeak optimal idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF223BAL, ENCFF419RSJ, ENCFF653BEU, ENCFF679SSP 347645 ENCODE Processing Pipeline 62eb23863d1bb302157f7282d3536d34 https://www.encodeproject.org/files/ENCFF315FFJ/@@download/ENCFF315FFJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF911OWN bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF420VDR 6845880 ENCODE Processing Pipeline f401e45914adb80c15d0fa47d35e33d5 https://www.encodeproject.org/files/ENCFF911OWN/@@download/ENCFF911OWN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF679SSP bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF242MGC 6858545 ENCODE Processing Pipeline 7cb1f332ef0bc1b53209620a85a85ee7 https://www.encodeproject.org/files/ENCFF679SSP/@@download/ENCFF679SSP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF865RNJ bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF402MTF, ENCFF420VDR 7244015 ENCODE Processing Pipeline c7ff1a0c2974d5be8d0346973c5fdf00 https://www.encodeproject.org/files/ENCFF865RNJ/@@download/ENCFF865RNJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF509BAZ bigBed narrowPeak conservative idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF030MCQ 488717 ENCODE Processing Pipeline 6369209dcd362940b09b8b8eef02d0d5 https://www.encodeproject.org/files/ENCFF509BAZ/@@download/ENCFF509BAZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF627JWF bigBed narrowPeak optimal idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF315FFJ 627730 ENCODE Processing Pipeline 039df7925bbb3dffe9d57de3f2e4a54c https://www.encodeproject.org/files/ENCFF627JWF/@@download/ENCFF627JWF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF151HMH bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF402MTF 6800910 ENCODE Processing Pipeline 9e497ed2939240c7bb854da585a137cc https://www.encodeproject.org/files/ENCFF151HMH/@@download/ENCFF151HMH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF653BEU bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF242MGC, ENCFF599QHU 7250229 ENCODE Processing Pipeline e73704d0c6257a35f0d20a9f4df246af https://www.encodeproject.org/files/ENCFF653BEU/@@download/ENCFF653BEU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF181ZQZ bigBed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF911OWN 13388832 ENCODE Processing Pipeline afeed6a6e474b4693db6abc36410802c https://www.encodeproject.org/files/ENCFF181ZQZ/@@download/ENCFF181ZQZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF795CAT bigBed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF151HMH 11269099 ENCODE Processing Pipeline 091569397af0e7125eb71740f4091afc https://www.encodeproject.org/files/ENCFF795CAT/@@download/ENCFF795CAT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF344VDJ bigBed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF653BEU 13370255 ENCODE Processing Pipeline 4f58f3f49f31d0ba6c84f3ccaff41544 https://www.encodeproject.org/files/ENCFF344VDJ/@@download/ENCFF344VDJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF406DYA bigBed narrowPeak conservative idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF323ACL 490758 ENCODE Processing Pipeline 1148ecbc5fcf12e2c76868d44088c79f https://www.encodeproject.org/files/ENCFF406DYA/@@download/ENCFF406DYA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF030MCQ bed narrowPeak conservative idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF151HMH, ENCFF865RNJ, ENCFF911OWN 248160 ENCODE Processing Pipeline 97456fb7efd14396863b757c887e9dc4 https://www.encodeproject.org/files/ENCFF030MCQ/@@download/ENCFF030MCQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF156PXG bigBed narrowPeak optimal idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF675HMV 629668 ENCODE Processing Pipeline caaa911a697c38f660732e67391a0f98 https://www.encodeproject.org/files/ENCFF156PXG/@@download/ENCFF156PXG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF323ACL bed narrowPeak conservative idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF223BAL, ENCFF419RSJ, ENCFF653BEU, ENCFF679SSP 248707 ENCODE Processing Pipeline 12b0725682b199561eb457af5ce468dc https://www.encodeproject.org/files/ENCFF323ACL/@@download/ENCFF323ACL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF675HMV bed narrowPeak optimal idr thresholded peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF151HMH, ENCFF865RNJ, ENCFF911OWN 349818 ENCODE Processing Pipeline f6590711d92391583ff6c9a8421d97bc https://www.encodeproject.org/files/ENCFF675HMV/@@download/ENCFF675HMV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF610KRG fastq reads ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF859PAK 2781076312 Michael Snyder, Stanford 19568a2e3dd538423f91e9a71a40ada0 SRA:SRR6213706 https://www.encodeproject.org/files/ENCFF610KRG/@@download/ENCFF610KRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF675CSM fastq reads ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF784RTY 2941907420 Michael Snyder, Stanford cbb598a5c4375ccd8497067b4dfb4e9f SRA:SRR6213707 https://www.encodeproject.org/files/ENCFF675CSM/@@download/ENCFF675CSM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF784RTY fastq reads ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF675CSM 2909076234 Michael Snyder, Stanford b9908877f9db8e695d502b71880b8f4c SRA:SRR6213707 https://www.encodeproject.org/files/ENCFF784RTY/@@download/ENCFF784RTY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF859PAK fastq reads ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF610KRG 2814953197 Michael Snyder, Stanford 3f94ebb82727f61bd9c8eb54445d2dcc SRA:SRR6213706 https://www.encodeproject.org/files/ENCFF859PAK/@@download/ENCFF859PAK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF981GKB bam unfiltered alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF610KRG, ENCFF807MUK, ENCFF859PAK 5648985465 ENCODE Processing Pipeline 0d1f5f281e9157a2a4c8eda40fa51e13 https://www.encodeproject.org/files/ENCFF981GKB/@@download/ENCFF981GKB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF419WTW bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF610KRG, ENCFF807MUK, ENCFF859PAK 4972559644 ENCODE Processing Pipeline 2ec4b1b38141b5993f7b339b993edf7e https://www.encodeproject.org/files/ENCFF419WTW/@@download/ENCFF419WTW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF870OFP bam unfiltered alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF675CSM, ENCFF784RTY, ENCFF807MUK 5894587386 ENCODE Processing Pipeline a02daa6711475d324b4ea8a890a2da06 https://www.encodeproject.org/files/ENCFF870OFP/@@download/ENCFF870OFP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF479DTT bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF675CSM, ENCFF784RTY, ENCFF807MUK 5166262829 ENCODE Processing Pipeline b96069ba85054471782cc339f85a2881 https://www.encodeproject.org/files/ENCFF479DTT/@@download/ENCFF479DTT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF957WUT bam unfiltered alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF675CSM, ENCFF784RTY 5903357909 ENCODE Processing Pipeline dfe14e5fa1014ffc638ac5077eb60602 https://www.encodeproject.org/files/ENCFF957WUT/@@download/ENCFF957WUT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF618RUK bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF675CSM, ENCFF784RTY 5168976996 ENCODE Processing Pipeline 79dd5ae1eadf45713f20e03118428d06 https://www.encodeproject.org/files/ENCFF618RUK/@@download/ENCFF618RUK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF675DVT bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF610KRG, ENCFF643CGH, ENCFF859PAK 4975027776 ENCODE Processing Pipeline e5d0009272bc457ed82e877bbaf348d9 https://www.encodeproject.org/files/ENCFF675DVT/@@download/ENCFF675DVT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF698ZSW bam unfiltered alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF610KRG, ENCFF643CGH, ENCFF859PAK 5657125042 ENCODE Processing Pipeline ad84960ce5c8df2aa36b6b8a60944372 https://www.encodeproject.org/files/ENCFF698ZSW/@@download/ENCFF698ZSW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF917FDF bigWig signal p-value ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF419WTW 1371114111 ENCODE Processing Pipeline 8517dc33917d38a888800ea2b1969f00 https://www.encodeproject.org/files/ENCFF917FDF/@@download/ENCFF917FDF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF994NRT bigWig signal p-value ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF479DTT 1403585916 ENCODE Processing Pipeline e6f2bfcfe5c0ccd845451eb7d75caa28 https://www.encodeproject.org/files/ENCFF994NRT/@@download/ENCFF994NRT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF577IMX bigWig signal p-value ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419WTW, ENCFF479DTT 2004301907 ENCODE Processing Pipeline b8c1998a4588b6bd9743b2c32da96ef8 https://www.encodeproject.org/files/ENCFF577IMX/@@download/ENCFF577IMX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF819GWI bigWig fold change over control ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF479DTT 1503856575 ENCODE Processing Pipeline 4ee79037f158c83608a6e193885f8432 https://www.encodeproject.org/files/ENCFF819GWI/@@download/ENCFF819GWI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF927KNS bigWig fold change over control ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419WTW, ENCFF479DTT 2057784045 ENCODE Processing Pipeline f4721fdacc37f0b833fbaa37f41f451a https://www.encodeproject.org/files/ENCFF927KNS/@@download/ENCFF927KNS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF501ERS bigWig fold change over control ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF419WTW 1438994866 ENCODE Processing Pipeline 41e02a78e2334067e5d00210d8e2cc73 https://www.encodeproject.org/files/ENCFF501ERS/@@download/ENCFF501ERS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF570TDQ bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419WTW, ENCFF479DTT 7150697 ENCODE Processing Pipeline 5050b37d6ea3599604d16a6e8a8b0211 https://www.encodeproject.org/files/ENCFF570TDQ/@@download/ENCFF570TDQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF232YYY bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF479DTT 6494225 ENCODE Processing Pipeline ff62fb896090099547fc56d938568d85 https://www.encodeproject.org/files/ENCFF232YYY/@@download/ENCFF232YYY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF499XDX bigBed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF232YYY 11213991 ENCODE Processing Pipeline 61aa9ba3d74ed889765934daa571dcc8 https://www.encodeproject.org/files/ENCFF499XDX/@@download/ENCFF499XDX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF167KNP bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF419WTW 6658551 ENCODE Processing Pipeline 7ff63ae1173185e738d43d442c8f775c https://www.encodeproject.org/files/ENCFF167KNP/@@download/ENCFF167KNP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF326TGF bigBed narrowPeak optimal idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF426RRZ 119808 ENCODE Processing Pipeline 1092f38bf1f34fb9e790930653e22223 https://www.encodeproject.org/files/ENCFF326TGF/@@download/ENCFF326TGF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF096LQM bigBed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF167KNP 11196525 ENCODE Processing Pipeline ffd69de41983c9f2657cde39a20c12fb https://www.encodeproject.org/files/ENCFF096LQM/@@download/ENCFF096LQM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF484DIE bigBed narrowPeak conservative idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF829GJF 97929 ENCODE Processing Pipeline cd495ee920da36c04f11e8d7c94d6cab https://www.encodeproject.org/files/ENCFF484DIE/@@download/ENCFF484DIE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF829GJF bed narrowPeak conservative idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF167KNP, ENCFF232YYY, ENCFF570TDQ 26745 ENCODE Processing Pipeline 6393537c8928e2bc3524b7d9bd3a1e44 https://www.encodeproject.org/files/ENCFF829GJF/@@download/ENCFF829GJF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF486FFA bigBed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF570TDQ 11096747 ENCODE Processing Pipeline d36fcc038f0992e46aff5c279dcdd2de https://www.encodeproject.org/files/ENCFF486FFA/@@download/ENCFF486FFA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF426RRZ bed narrowPeak optimal idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF167KNP, ENCFF232YYY, ENCFF570TDQ 41634 ENCODE Processing Pipeline f88cabcbacc7e006a62ee16dc3d0f1ac https://www.encodeproject.org/files/ENCFF426RRZ/@@download/ENCFF426RRZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF538DZZ bigWig signal p-value ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF675DVT 1411126390 ENCODE Processing Pipeline b014aca548b66f2251ef54e51f693568 https://www.encodeproject.org/files/ENCFF538DZZ/@@download/ENCFF538DZZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF420FNT bigWig fold change over control ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF675DVT 1472793142 ENCODE Processing Pipeline 2c5e4df82a05f902785567f26b2fbf52 https://www.encodeproject.org/files/ENCFF420FNT/@@download/ENCFF420FNT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF240UQC bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF675DVT 6670435 ENCODE Processing Pipeline e91462d801dea44c9f75e08929fd04e7 https://www.encodeproject.org/files/ENCFF240UQC/@@download/ENCFF240UQC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF762IES bigWig signal p-value ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF618RUK, ENCFF675DVT 1976762735 ENCODE Processing Pipeline 7dfafc64204ccbfe40e888286113409c https://www.encodeproject.org/files/ENCFF762IES/@@download/ENCFF762IES.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF038RHJ bigWig fold change over control ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF618RUK 1504619813 ENCODE Processing Pipeline 52316209866a6e55a2f31d289bee9c5a https://www.encodeproject.org/files/ENCFF038RHJ/@@download/ENCFF038RHJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF286JTL bigWig signal p-value ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF618RUK 1434724929 ENCODE Processing Pipeline 1425afca269dc7104735bbebd089da5a https://www.encodeproject.org/files/ENCFF286JTL/@@download/ENCFF286JTL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF172ZJC bigWig fold change over control ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF618RUK, ENCFF675DVT 2027399581 ENCODE Processing Pipeline aff0a63996b3cdd4ca195230fdc92930 https://www.encodeproject.org/files/ENCFF172ZJC/@@download/ENCFF172ZJC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF921YJP bigBed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF988XSF 11226544 ENCODE Processing Pipeline 8657a2ac0ade1130f32ea581c5ab1a39 https://www.encodeproject.org/files/ENCFF921YJP/@@download/ENCFF921YJP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF988XSF bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF618RUK 6496906 ENCODE Processing Pipeline 7215170ff5d28135ca767c22361d7f79 https://www.encodeproject.org/files/ENCFF988XSF/@@download/ENCFF988XSF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF953GBG bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF618RUK, ENCFF675DVT 7161119 ENCODE Processing Pipeline a1bd572a5203f62b9626d958161c0ecb https://www.encodeproject.org/files/ENCFF953GBG/@@download/ENCFF953GBG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF369MVH bed narrowPeak conservative idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF240UQC, ENCFF419RSJ, ENCFF953GBG, ENCFF988XSF 27515 ENCODE Processing Pipeline c2c18441fb393b7c4a1c0b51a107343e https://www.encodeproject.org/files/ENCFF369MVH/@@download/ENCFF369MVH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF273JQK bigBed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF240UQC 11228713 ENCODE Processing Pipeline 2ce5e5f1deff9f7009ee61b1b9dc0b73 https://www.encodeproject.org/files/ENCFF273JQK/@@download/ENCFF273JQK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF363SMQ bigBed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF953GBG 11121034 ENCODE Processing Pipeline a15a64a4d16e18c6c4c1f65d2f3233b8 https://www.encodeproject.org/files/ENCFF363SMQ/@@download/ENCFF363SMQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF850ZRY bigBed narrowPeak conservative idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF369MVH 100156 ENCODE Processing Pipeline cf5f9f85ab0c213372d32ed687bc3a09 https://www.encodeproject.org/files/ENCFF850ZRY/@@download/ENCFF850ZRY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF947QIM bigBed narrowPeak optimal idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF832OST 117750 ENCODE Processing Pipeline 25b4404402e2f4759ee17431ef9abf5f https://www.encodeproject.org/files/ENCFF947QIM/@@download/ENCFF947QIM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF832OST bed narrowPeak optimal idr thresholded peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF240UQC, ENCFF419RSJ, ENCFF953GBG, ENCFF988XSF 39140 ENCODE Processing Pipeline 8b249531883f3b4e752a38a3a7b98699 https://www.encodeproject.org/files/ENCFF832OST/@@download/ENCFF832OST.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF322OHR fastq reads ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF930PJS 2566279848 Michael Snyder, Stanford d93c7c89ddc23a8d7e747a880b31559f SRA:SRR5111504 https://www.encodeproject.org/files/ENCFF322OHR/@@download/ENCFF322OHR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF014DZB fastq reads ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF363NUU 1955377606 Michael Snyder, Stanford 9e8c9882ca641820ac309e32ef6bdf39 SRA:SRR5111505 https://www.encodeproject.org/files/ENCFF014DZB/@@download/ENCFF014DZB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF930PJS fastq reads ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF322OHR 2639170342 Michael Snyder, Stanford 732468ebe0ac79f152c5b3050ff1f2c8 SRA:SRR5111504 https://www.encodeproject.org/files/ENCFF930PJS/@@download/ENCFF930PJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF363NUU fastq reads ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF014DZB 2009172172 Michael Snyder, Stanford 868e164969b5f73501da838c01334c4d SRA:SRR5111505 https://www.encodeproject.org/files/ENCFF363NUU/@@download/ENCFF363NUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF196QPD bam unfiltered alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF014DZB, ENCFF363NUU, ENCFF807MUK 4436713008 ENCODE Processing Pipeline c751f3c941681ff0c83e750a4e90838c https://www.encodeproject.org/files/ENCFF196QPD/@@download/ENCFF196QPD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF492CAQ bam unfiltered alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF014DZB, ENCFF363NUU, ENCFF643CGH 4441884621 ENCODE Processing Pipeline b73a5bd65a3afef9a5f735dbd3181cc9 https://www.encodeproject.org/files/ENCFF492CAQ/@@download/ENCFF492CAQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF098OYR bam unfiltered alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF322OHR, ENCFF807MUK, ENCFF930PJS 5698537595 ENCODE Processing Pipeline d85b7eaa2c3cb140e21c7840fc5e0c4f https://www.encodeproject.org/files/ENCFF098OYR/@@download/ENCFF098OYR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF235GWZ bam unfiltered alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF322OHR, ENCFF643CGH, ENCFF930PJS 5704871556 ENCODE Processing Pipeline c289fa7299637c813e818cd7891197b4 https://www.encodeproject.org/files/ENCFF235GWZ/@@download/ENCFF235GWZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF975BWD bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF014DZB, ENCFF363NUU, ENCFF807MUK 3860551278 ENCODE Processing Pipeline 6b056316c04af53bceb539291a46950e https://www.encodeproject.org/files/ENCFF975BWD/@@download/ENCFF975BWD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF691TZW bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF014DZB, ENCFF363NUU, ENCFF643CGH 3862231155 ENCODE Processing Pipeline 1d47e80821dc0c2c54e17245a27b9f84 https://www.encodeproject.org/files/ENCFF691TZW/@@download/ENCFF691TZW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF667TBL bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF322OHR, ENCFF807MUK, ENCFF930PJS 4982793512 ENCODE Processing Pipeline 617a0f858852f1250322f583347c4eed https://www.encodeproject.org/files/ENCFF667TBL/@@download/ENCFF667TBL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF162XYQ bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF322OHR, ENCFF643CGH, ENCFF930PJS 4984579232 ENCODE Processing Pipeline 7a30f6d6ed29c3e5a5a65cb44f4ce7b2 https://www.encodeproject.org/files/ENCFF162XYQ/@@download/ENCFF162XYQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF622SSU bigWig signal p-value ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF667TBL 1509474981 ENCODE Processing Pipeline e8fb881f256aeb66f2832923c1e07f57 https://www.encodeproject.org/files/ENCFF622SSU/@@download/ENCFF622SSU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF908SAK bigWig signal p-value ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF975BWD 1296206048 ENCODE Processing Pipeline 3b3b0eae9d2fbce7b23a6add674ade0c https://www.encodeproject.org/files/ENCFF908SAK/@@download/ENCFF908SAK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF824VAJ bigWig signal p-value ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF667TBL, ENCFF975BWD 1979097847 ENCODE Processing Pipeline 402d76101b1985b8ca16dc4ddea43f6c https://www.encodeproject.org/files/ENCFF824VAJ/@@download/ENCFF824VAJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF621LOT bigWig fold change over control ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF667TBL 1476817185 ENCODE Processing Pipeline ed5de64d698501dd10a45a5fce9bda5d https://www.encodeproject.org/files/ENCFF621LOT/@@download/ENCFF621LOT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF591PZW bigWig fold change over control ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF975BWD 1305873479 ENCODE Processing Pipeline f1f1d5f3da9fa34469c408ea005e35ae https://www.encodeproject.org/files/ENCFF591PZW/@@download/ENCFF591PZW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF020WWC bigWig fold change over control ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF667TBL, ENCFF975BWD 1989702371 ENCODE Processing Pipeline 2ddbc47b3d98df06118724d91cdc5a80 https://www.encodeproject.org/files/ENCFF020WWC/@@download/ENCFF020WWC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF900QTS bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF667TBL 7042157 ENCODE Processing Pipeline 7ea4332f4d02ab7d74887c18b08edac8 https://www.encodeproject.org/files/ENCFF900QTS/@@download/ENCFF900QTS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF308IOS bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF975BWD 6849212 ENCODE Processing Pipeline 9621775a6b34d33a63ee13b17d8f1677 https://www.encodeproject.org/files/ENCFF308IOS/@@download/ENCFF308IOS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF828JWB bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF667TBL, ENCFF975BWD 7233332 ENCODE Processing Pipeline 9d96c47391801d1d8ca3a9e875649535 https://www.encodeproject.org/files/ENCFF828JWB/@@download/ENCFF828JWB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF917RQR bigBed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF900QTS 13284544 ENCODE Processing Pipeline 97d4d7cd10b76fd2ab268dd28a56be1a https://www.encodeproject.org/files/ENCFF917RQR/@@download/ENCFF917RQR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF341MSG bigBed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF308IOS 13395962 ENCODE Processing Pipeline 4a352f288c5900309ab62ac0a96b505a https://www.encodeproject.org/files/ENCFF341MSG/@@download/ENCFF341MSG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF650ZDS bigBed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF828JWB 13162108 ENCODE Processing Pipeline e87dcc82b3e9cf2bd8d2695845e50957 https://www.encodeproject.org/files/ENCFF650ZDS/@@download/ENCFF650ZDS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF049AEN bed narrowPeak conservative idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF308IOS, ENCFF828JWB, ENCFF900QTS 370983 ENCODE Processing Pipeline 083795ffadc390d5be4639b05eb35100 https://www.encodeproject.org/files/ENCFF049AEN/@@download/ENCFF049AEN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF730IAA bigBed narrowPeak conservative idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF049AEN 782342 ENCODE Processing Pipeline d0e14033f1fc7182c6f5c770d400794d https://www.encodeproject.org/files/ENCFF730IAA/@@download/ENCFF730IAA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF943KIE bed narrowPeak optimal idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF308IOS, ENCFF828JWB, ENCFF900QTS 449398 ENCODE Processing Pipeline 2899d96cf639315fd98660cd47de89df https://www.encodeproject.org/files/ENCFF943KIE/@@download/ENCFF943KIE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF546NBO bigBed narrowPeak optimal idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF943KIE 907720 ENCODE Processing Pipeline 5cf4b9bcaa1382d7d0e1d54f995eb417 https://www.encodeproject.org/files/ENCFF546NBO/@@download/ENCFF546NBO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF827ELD bigWig signal p-value ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF691TZW 1149423244 ENCODE Processing Pipeline 707e11645bbb90cd4840351864715c65 https://www.encodeproject.org/files/ENCFF827ELD/@@download/ENCFF827ELD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF225CDI bigWig signal p-value ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF162XYQ 1338905719 ENCODE Processing Pipeline 0c5588fab4b55a1aabea6f8f968299ce https://www.encodeproject.org/files/ENCFF225CDI/@@download/ENCFF225CDI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF240PGQ bigWig signal p-value ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF162XYQ, ENCFF691TZW 1980384330 ENCODE Processing Pipeline ab5b9060cd7f3070d6fc251c129e6d3e https://www.encodeproject.org/files/ENCFF240PGQ/@@download/ENCFF240PGQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF700VBY bigWig fold change over control ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF162XYQ 1518972516 ENCODE Processing Pipeline 4c18db545b925e8a0d38902f2fa27bbc https://www.encodeproject.org/files/ENCFF700VBY/@@download/ENCFF700VBY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF824POW bigWig fold change over control ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF691TZW 1281896751 ENCODE Processing Pipeline 1f0dd363d1268b9be1e51429300db829 https://www.encodeproject.org/files/ENCFF824POW/@@download/ENCFF824POW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF557CRC bigWig fold change over control ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF162XYQ, ENCFF691TZW 1992632798 ENCODE Processing Pipeline 5d6df1f168325ac7dd5d1c12b0b9d682 https://www.encodeproject.org/files/ENCFF557CRC/@@download/ENCFF557CRC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF306CCW bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF162XYQ 6970190 ENCODE Processing Pipeline 3b5483c1903b762f1be119860b767824 https://www.encodeproject.org/files/ENCFF306CCW/@@download/ENCFF306CCW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF035KRS bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF162XYQ, ENCFF691TZW 7244532 ENCODE Processing Pipeline 390aecdc724e57f94d61cd8c1c48a32f https://www.encodeproject.org/files/ENCFF035KRS/@@download/ENCFF035KRS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF252QVE bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF691TZW 6770295 ENCODE Processing Pipeline 0a5176cad6b041aca9113aa8bec55d02 https://www.encodeproject.org/files/ENCFF252QVE/@@download/ENCFF252QVE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF258ISV bigBed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF306CCW 13278847 ENCODE Processing Pipeline 5047e85eb9b4b40a789f135b17a77009 https://www.encodeproject.org/files/ENCFF258ISV/@@download/ENCFF258ISV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF760NNE bigBed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF252QVE 13404027 ENCODE Processing Pipeline 1d953b860cc0d2963bbb6688deac6f3e https://www.encodeproject.org/files/ENCFF760NNE/@@download/ENCFF760NNE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF488MIB bigBed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF035KRS 13191664 ENCODE Processing Pipeline 32fe430559fe701715ff501a0d5b3d6d https://www.encodeproject.org/files/ENCFF488MIB/@@download/ENCFF488MIB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF319REJ bigBed narrowPeak conservative idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF016SNP 801641 ENCODE Processing Pipeline 471dd9f5b661876d4fbeff2976ec236e https://www.encodeproject.org/files/ENCFF319REJ/@@download/ENCFF319REJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF016SNP bed narrowPeak conservative idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF035KRS, ENCFF252QVE, ENCFF306CCW, ENCFF419RSJ 385303 ENCODE Processing Pipeline 74398133d444bba85ad62da7bd35f7d1 https://www.encodeproject.org/files/ENCFF016SNP/@@download/ENCFF016SNP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF963VBB bed narrowPeak optimal idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF035KRS, ENCFF252QVE, ENCFF306CCW, ENCFF419RSJ 444246 ENCODE Processing Pipeline 9e37da1c2388852f61e708b6224290f4 https://www.encodeproject.org/files/ENCFF963VBB/@@download/ENCFF963VBB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF707KTH bigBed narrowPeak optimal idr thresholded peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF963VBB 898337 ENCODE Processing Pipeline fd7b97440d9b071adcc7f4129dcc9e90 https://www.encodeproject.org/files/ENCFF707KTH/@@download/ENCFF707KTH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF938ZZA bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF807MUK 5259175137 ENCODE Processing Pipeline da83488ebbb92b1b0bf85aac03f07a86 https://www.encodeproject.org/files/ENCFF938ZZA/@@download/ENCFF938ZZA.bam hg19 released mild to moderate bottlenecking ENCFF038JKO bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF807MUK 5252361138 ENCODE Processing Pipeline a9e684658b8e68b29935b3a015b735f1 https://www.encodeproject.org/files/ENCFF038JKO/@@download/ENCFF038JKO.bam hg19 released mild to moderate bottlenecking ENCFF368HQB bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1091829949 ENCODE Processing Pipeline e67147fb5134317fb467160ffb8f1097 https://www.encodeproject.org/files/ENCFF368HQB/@@download/ENCFF368HQB.bigWig hg19 released mild to moderate bottlenecking ENCFF946NKX bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1121284305 ENCODE Processing Pipeline ab7161aaba9d0cc8fae759748a53a52f https://www.encodeproject.org/files/ENCFF946NKX/@@download/ENCFF946NKX.bigWig hg19 released mild to moderate bottlenecking ENCFF002EKK fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKO 2411503282 Michael Snyder, Stanford 0f0fd8ea5fb9948458b4f2efaa74f6c6 SRA:SRR5111548 https://www.encodeproject.org/files/ENCFF002EKK/@@download/ENCFF002EKK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking ENCFF002EKL fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKR 2414375376 Michael Snyder, Stanford adc58dbcc628d6dfcc07e99bc2c539fb SRA:SRR5111549 https://www.encodeproject.org/files/ENCFF002EKL/@@download/ENCFF002EKL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking ENCFF002EKO fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EKK 2486125262 Michael Snyder, Stanford 73c95123cfb212d062265f7c2f5c9af8 SRA:SRR5111548 https://www.encodeproject.org/files/ENCFF002EKO/@@download/ENCFF002EKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking ENCFF002EKR fastq reads ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EKL 2477722525 Michael Snyder, Stanford 26eee5026107bdbaabafecdf4d3e2c85 SRA:SRR5111549 https://www.encodeproject.org/files/ENCFF002EKR/@@download/ENCFF002EKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking ENCFF294PGV bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 5612376 ENCODE Processing Pipeline 0b23ee499ba75b482e1616b4acba89ad https://www.encodeproject.org/files/ENCFF294PGV/@@download/ENCFF294PGV.bed.gz hg19 released mild to moderate bottlenecking ENCFF527ONY bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5472017 ENCODE Processing Pipeline 42824a013f1513874aafba1837a83137 https://www.encodeproject.org/files/ENCFF527ONY/@@download/ENCFF527ONY.bed.gz hg19 released mild to moderate bottlenecking ENCFF211AWN bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF942POQ 11474856 ENCODE Processing Pipeline f26ea6a02c330f25b28ecac29e1c6405 https://www.encodeproject.org/files/ENCFF211AWN/@@download/ENCFF211AWN.bigBed hg19 released mild to moderate bottlenecking ENCFF942POQ bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 6836198 ENCODE Processing Pipeline 1f9227a143a5d1572ff45ca1c1e20e56 https://www.encodeproject.org/files/ENCFF942POQ/@@download/ENCFF942POQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF472PDP bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF294PGV 11457307 ENCODE Processing Pipeline 944f89b611f81479aaeb109b8f8bbb4e https://www.encodeproject.org/files/ENCFF472PDP/@@download/ENCFF472PDP.bigBed hg19 released mild to moderate bottlenecking ENCFF086UZN bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF527ONY 11537103 ENCODE Processing Pipeline e50dfb02299f2ce366546392864a530c https://www.encodeproject.org/files/ENCFF086UZN/@@download/ENCFF086UZN.bigBed hg19 released mild to moderate bottlenecking ENCFF341HWZ bed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF294PGV, ENCFF527ONY, ENCFF942POQ 94616 ENCODE Processing Pipeline c59b54537720fe013b61c273bcdb7db5 https://www.encodeproject.org/files/ENCFF341HWZ/@@download/ENCFF341HWZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF742LLN bed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF294PGV, ENCFF527ONY, ENCFF942POQ 54792 ENCODE Processing Pipeline d39c411d0f2d16675656a3266c196d5c https://www.encodeproject.org/files/ENCFF742LLN/@@download/ENCFF742LLN.bed.gz hg19 released mild to moderate bottlenecking ENCFF512ITG bigBed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF742LLN 149164 ENCODE Processing Pipeline f71495efeaf419e6ca9fdb83ac4ab0bc https://www.encodeproject.org/files/ENCFF512ITG/@@download/ENCFF512ITG.bigBed hg19 released mild to moderate bottlenecking ENCFF645ODN bigBed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF341HWZ 204826 ENCODE Processing Pipeline bc5018a7351b341383e53d26820fe591 https://www.encodeproject.org/files/ENCFF645ODN/@@download/ENCFF645ODN.bigBed hg19 released mild to moderate bottlenecking ENCFF327BYF bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF807MUK 4173101310 ENCODE Processing Pipeline 97583b24bdf8164e16ccf3353485d032 https://www.encodeproject.org/files/ENCFF327BYF/@@download/ENCFF327BYF.bam hg19 released mild to moderate bottlenecking ENCFF288FXI bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF807MUK 4164373576 ENCODE Processing Pipeline 720c1767caa1da842d7401fbbb8f89b6 https://www.encodeproject.org/files/ENCFF288FXI/@@download/ENCFF288FXI.bam hg19 released mild to moderate bottlenecking ENCFF205XGK bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 1100831207 ENCODE Processing Pipeline 77fe221312e54e74b976574d933dfa9c https://www.encodeproject.org/files/ENCFF205XGK/@@download/ENCFF205XGK.bigWig hg19 released mild to moderate bottlenecking ENCFF785IVC bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1095563841 ENCODE Processing Pipeline 2da78a8be889b394042952042c1b176d https://www.encodeproject.org/files/ENCFF785IVC/@@download/ENCFF785IVC.bigWig hg19 archived mild to moderate bottlenecking ENCFF076JXG bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 1995119381 ENCODE Processing Pipeline e21dc51869650f0cd98d079d522fc387 https://www.encodeproject.org/files/ENCFF076JXG/@@download/ENCFF076JXG.bigWig hg19 released mild to moderate bottlenecking ENCFF646CCS bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 1199015691 ENCODE Processing Pipeline 36d05eddd95d4bdd5a989d10a84c2a64 https://www.encodeproject.org/files/ENCFF646CCS/@@download/ENCFF646CCS.bigWig hg19 released mild to moderate bottlenecking ENCFF989VXX bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 1128754849 ENCODE Processing Pipeline 221bf9446eee2903cc33fd5b5c289ab4 https://www.encodeproject.org/files/ENCFF989VXX/@@download/ENCFF989VXX.bigWig hg19 archived mild to moderate bottlenecking ENCFF785IFK bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 2220415099 ENCODE Processing Pipeline c2ae04d425741268783b01ee3b391228 https://www.encodeproject.org/files/ENCFF785IFK/@@download/ENCFF785IFK.bigWig hg19 released mild to moderate bottlenecking ENCFF789FWH bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5671340 ENCODE Processing Pipeline 69423bde704039a08639185373c99a15 https://www.encodeproject.org/files/ENCFF789FWH/@@download/ENCFF789FWH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF706IKA bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 5813485 ENCODE Processing Pipeline 80cee6f29bd85bbc394a23091e4398f8 https://www.encodeproject.org/files/ENCFF706IKA/@@download/ENCFF706IKA.bed.gz hg19 archived mild to moderate bottlenecking ENCFF035PSF bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF288FXI, ENCFF327BYF, ENCFF941TZZ 6940511 ENCODE Processing Pipeline c4d1fee7d4f04427937b232282fbc4f6 https://www.encodeproject.org/files/ENCFF035PSF/@@download/ENCFF035PSF.bed.gz hg19 archived mild to moderate bottlenecking ENCFF336BNP bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF706IKA 11483437 ENCODE Processing Pipeline 4ff5bc524d77beea5b13c687fa9b6f9b https://www.encodeproject.org/files/ENCFF336BNP/@@download/ENCFF336BNP.bigBed hg19 archived mild to moderate bottlenecking ENCFF081AGJ bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF789FWH 11574114 ENCODE Processing Pipeline 5ff83fdd03d26d31337cbf678ada2a0e https://www.encodeproject.org/files/ENCFF081AGJ/@@download/ENCFF081AGJ.bigBed hg19 archived mild to moderate bottlenecking ENCFF613EAJ bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF035PSF 11476266 ENCODE Processing Pipeline 47a2a90bdb4bf92c864ca40415bcf25b https://www.encodeproject.org/files/ENCFF613EAJ/@@download/ENCFF613EAJ.bigBed hg19 archived mild to moderate bottlenecking ENCFF897PRV bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF643CGH 5264035969 ENCODE Processing Pipeline b102133b59aff632bbce5cab84c31033 https://www.encodeproject.org/files/ENCFF897PRV/@@download/ENCFF897PRV.bam GRCh38 released mild to moderate bottlenecking ENCFF844CVM bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF643CGH 4171149707 ENCODE Processing Pipeline a7c8caa65cf8cf05b2fc4ae9e1a2ff14 https://www.encodeproject.org/files/ENCFF844CVM/@@download/ENCFF844CVM.bam GRCh38 released mild to moderate bottlenecking ENCFF345DIP bam unfiltered alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF643CGH 5252810687 ENCODE Processing Pipeline a0bf1f4ff521534f105c6c4a931b4a33 https://www.encodeproject.org/files/ENCFF345DIP/@@download/ENCFF345DIP.bam GRCh38 released mild to moderate bottlenecking ENCFF541BNH bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF643CGH 4192789093 ENCODE Processing Pipeline 8970643dcd434d43e2649d36e616bd3d https://www.encodeproject.org/files/ENCFF541BNH/@@download/ENCFF541BNH.bam GRCh38 released mild to moderate bottlenecking ENCFF380FCK bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF844CVM, ENCFF879YMO 1235727588 ENCODE Processing Pipeline 0f0638e0cc20bfc8cc1515c7e8ca3ccd https://www.encodeproject.org/files/ENCFF380FCK/@@download/ENCFF380FCK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF870HHX bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF541BNH, ENCFF574BGV 934814741 ENCODE Processing Pipeline 86743d8af20f0f58b0f718001efbbc93 https://www.encodeproject.org/files/ENCFF870HHX/@@download/ENCFF870HHX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF191ZWL bigWig signal p-value ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541BNH, ENCFF574BGV, ENCFF844CVM, ENCFF879YMO 2155078280 ENCODE Processing Pipeline 76a602a2fc11f5be324e35c8264183fe https://www.encodeproject.org/files/ENCFF191ZWL/@@download/ENCFF191ZWL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF508KEM bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF844CVM, ENCFF879YMO 1201192503 ENCODE Processing Pipeline cbc896500a288702815cd32b25c6f2e3 https://www.encodeproject.org/files/ENCFF508KEM/@@download/ENCFF508KEM.bigWig GRCh38 released mild to moderate bottlenecking ENCFF041EKZ bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF541BNH, ENCFF574BGV 1113397942 ENCODE Processing Pipeline 81549885b5c338ef3b5adfad83c6f5c1 https://www.encodeproject.org/files/ENCFF041EKZ/@@download/ENCFF041EKZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF161JPA bigWig fold change over control ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541BNH, ENCFF574BGV, ENCFF844CVM, ENCFF879YMO 2150987077 ENCODE Processing Pipeline 4ec5eb6c64c4747329019066e1a29487 https://www.encodeproject.org/files/ENCFF161JPA/@@download/ENCFF161JPA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF553OPN bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF084JTT 11553284 ENCODE Processing Pipeline d9eb4f55338135d66b96230b117591ea https://www.encodeproject.org/files/ENCFF553OPN/@@download/ENCFF553OPN.bigBed GRCh38 released mild to moderate bottlenecking ENCFF814CND bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF326HIY 11501856 ENCODE Processing Pipeline 40b0db947a1b252e3cf1d981c8a51b6a https://www.encodeproject.org/files/ENCFF814CND/@@download/ENCFF814CND.bigBed GRCh38 released mild to moderate bottlenecking ENCFF084JTT bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF541BNH, ENCFF574BGV 5474972 ENCODE Processing Pipeline f72156943b6d12f01c597a8d5652f4fc https://www.encodeproject.org/files/ENCFF084JTT/@@download/ENCFF084JTT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF326HIY bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541BNH, ENCFF574BGV, ENCFF844CVM, ENCFF879YMO 6846402 ENCODE Processing Pipeline c0c031ca1535c71b9a65b1e0bd3b50f7 https://www.encodeproject.org/files/ENCFF326HIY/@@download/ENCFF326HIY.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF084MAA bigBed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF101AVT 11479479 ENCODE Processing Pipeline b9fd701822c5c059e9bb49189bd1ea98 https://www.encodeproject.org/files/ENCFF084MAA/@@download/ENCFF084MAA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF101AVT bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF844CVM, ENCFF879YMO 5615827 ENCODE Processing Pipeline 9be52a754e145c169e3a856d72eb4292 https://www.encodeproject.org/files/ENCFF101AVT/@@download/ENCFF101AVT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604AZX bed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF084JTT, ENCFF101AVT, ENCFF326HIY, ENCFF419RSJ 90581 ENCODE Processing Pipeline 85ec6288b02f08e80b393f6e3354c27a https://www.encodeproject.org/files/ENCFF604AZX/@@download/ENCFF604AZX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF065MLN bed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF084JTT, ENCFF101AVT, ENCFF326HIY, ENCFF419RSJ 57042 ENCODE Processing Pipeline 4c50b0cb3795922c56c1640b7ea4053f https://www.encodeproject.org/files/ENCFF065MLN/@@download/ENCFF065MLN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF326LCX bigBed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF065MLN 153140 ENCODE Processing Pipeline 718d65c6faa0a57ed59c6446eafae0de https://www.encodeproject.org/files/ENCFF326LCX/@@download/ENCFF326LCX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF722HCL bigBed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF604AZX 199813 ENCODE Processing Pipeline 5bba9fc4456e3b6e47d7468c9cfc9489 https://www.encodeproject.org/files/ENCFF722HCL/@@download/ENCFF722HCL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF880CYV bed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF035PSF, ENCFF706IKA, ENCFF789FWH 48104 ENCODE Processing Pipeline d2668df4c030cb671b7fbeffd1b8a58f https://www.encodeproject.org/files/ENCFF880CYV/@@download/ENCFF880CYV.bed.gz hg19 archived mild to moderate bottlenecking ENCFF976ZVG bed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF035PSF, ENCFF706IKA, ENCFF789FWH 74711 ENCODE Processing Pipeline b9ca3746a271c526d07bb436aa4d07b7 https://www.encodeproject.org/files/ENCFF976ZVG/@@download/ENCFF976ZVG.bed.gz hg19 archived mild to moderate bottlenecking ENCFF543PJM bigBed narrowPeak conservative idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF880CYV 114236 ENCODE Processing Pipeline 3a0a6ad239f7e7abeae243959d27aa90 https://www.encodeproject.org/files/ENCFF543PJM/@@download/ENCFF543PJM.bigBed hg19 archived mild to moderate bottlenecking ENCFF932VYU bigBed narrowPeak optimal idr thresholded peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF976ZVG 176972 ENCODE Processing Pipeline 879ebf801994eae2a2663f0f20faf6df https://www.encodeproject.org/files/ENCFF932VYU/@@download/ENCFF932VYU.bigBed hg19 archived mild to moderate bottlenecking ENCFF486FEL bam unfiltered alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOZ, ENCFF002EGE, ENCFF807MUK 5014426626 ENCODE Processing Pipeline a2bedece7ae7fc2ad3669ead0f5df9ed https://www.encodeproject.org/files/ENCFF486FEL/@@download/ENCFF486FEL.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF548ZOU bam unfiltered alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPH, ENCFF002EGD, ENCFF807MUK 5655885771 ENCODE Processing Pipeline 258d0852f104343ad84fc7f325b648a2 https://www.encodeproject.org/files/ENCFF548ZOU/@@download/ENCFF548ZOU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002DOZ fastq reads ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGE 2422120907 Michael Snyder, Stanford f066366ed0da12e2c6bbfea280f379f7 SRA:SRR5111632 https://www.encodeproject.org/files/ENCFF002DOZ/@@download/ENCFF002DOZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002DPH fastq reads ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGD 2639153320 Michael Snyder, Stanford 9ba619fc8552c49d2cd98f27b452c029 SRA:SRR5111631 https://www.encodeproject.org/files/ENCFF002DPH/@@download/ENCFF002DPH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF246CBF bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 5734520 ENCODE Processing Pipeline 86b483a18a63ce2a53d4da7d522dfe3b https://www.encodeproject.org/files/ENCFF246CBF/@@download/ENCFF246CBF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EGD fastq reads ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPH 2625399033 Michael Snyder, Stanford 812665310654c33619de092cd130bd04 SRA:SRR5111631 https://www.encodeproject.org/files/ENCFF002EGD/@@download/ENCFF002EGD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EGE fastq reads ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOZ 2434996255 Michael Snyder, Stanford 7638f3990d9c6cb1947093da124eb539 SRA:SRR5111632 https://www.encodeproject.org/files/ENCFF002EGE/@@download/ENCFF002EGE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF401PPU bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF095UEF, ENCFF481RQA, ENCFF581ZJL 6912773 ENCODE Processing Pipeline df092442203bf240ff9ab33f7e8489ea https://www.encodeproject.org/files/ENCFF401PPU/@@download/ENCFF401PPU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF083XOF bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 6014706 ENCODE Processing Pipeline ff0df313b2f61b66df6a8b77f1d620a0 https://www.encodeproject.org/files/ENCFF083XOF/@@download/ENCFF083XOF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF817SLI bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF246CBF 11316585 ENCODE Processing Pipeline 1e77f45373e5248b0fb66b39fec359ea https://www.encodeproject.org/files/ENCFF817SLI/@@download/ENCFF817SLI.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF981TNZ bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF401PPU 11180311 ENCODE Processing Pipeline f4a19fad966d6af6fda480c54ffd1c3c https://www.encodeproject.org/files/ENCFF981TNZ/@@download/ENCFF981TNZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF291YTZ bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF083XOF 11200103 ENCODE Processing Pipeline f4ffcdd09a0142e2a60c2215bfe7351e https://www.encodeproject.org/files/ENCFF291YTZ/@@download/ENCFF291YTZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF168KBY bed narrowPeak conservative idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF083XOF, ENCFF246CBF, ENCFF401PPU 61456 ENCODE Processing Pipeline 19f0c8975a9734a45cf296c075231184 https://www.encodeproject.org/files/ENCFF168KBY/@@download/ENCFF168KBY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF763CRU bigBed narrowPeak optimal idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF573DRR 248800 ENCODE Processing Pipeline ce2f4303282c415ca851e158cc38db22 https://www.encodeproject.org/files/ENCFF763CRU/@@download/ENCFF763CRU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF152UDH bigBed narrowPeak conservative idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF168KBY 154642 ENCODE Processing Pipeline ef31cc839fd59209c00d3a2787bc2906 https://www.encodeproject.org/files/ENCFF152UDH/@@download/ENCFF152UDH.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF573DRR bed narrowPeak optimal idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF083XOF, ENCFF246CBF, ENCFF401PPU 100617 ENCODE Processing Pipeline 5fd41070314178340b7f951075c763b4 https://www.encodeproject.org/files/ENCFF573DRR/@@download/ENCFF573DRR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF095UEF bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPH, ENCFF002EGD, ENCFF807MUK 4710573262 ENCODE Processing Pipeline 289be9e2f4d6e5696bd77514061b467f https://www.encodeproject.org/files/ENCFF095UEF/@@download/ENCFF095UEF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF481RQA bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOZ, ENCFF002EGE, ENCFF807MUK 3463856910 ENCODE Processing Pipeline 7bf39f063f5593b11de418c5092cfece https://www.encodeproject.org/files/ENCFF481RQA/@@download/ENCFF481RQA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF750MSY bigWig signal p-value ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 1064208443 ENCODE Processing Pipeline feb36b8884a61e798d5120a7d3d24d4a https://www.encodeproject.org/files/ENCFF750MSY/@@download/ENCFF750MSY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF360VOC bigWig signal p-value ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 1286727296 ENCODE Processing Pipeline 5d1b02508dbf0d41fd2a7e1b6da32778 https://www.encodeproject.org/files/ENCFF360VOC/@@download/ENCFF360VOC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF887PEN bigWig signal p-value ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF095UEF, ENCFF481RQA, ENCFF581ZJL 1944322166 ENCODE Processing Pipeline a3c0de3527f5d643cd73a7cc52a61aa3 https://www.encodeproject.org/files/ENCFF887PEN/@@download/ENCFF887PEN.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF239YUM bigWig fold change over control ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 1071678127 ENCODE Processing Pipeline f73a03b2f14f3164f5e09b295d6f3488 https://www.encodeproject.org/files/ENCFF239YUM/@@download/ENCFF239YUM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF432WCK bigWig fold change over control ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 1232325931 ENCODE Processing Pipeline 15401a17260c94c9d5cc8d7f92649200 https://www.encodeproject.org/files/ENCFF432WCK/@@download/ENCFF432WCK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF036VRY bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF766PWX 11345822 ENCODE Processing Pipeline e2e696459744f18b34f837a7e22f25a4 https://www.encodeproject.org/files/ENCFF036VRY/@@download/ENCFF036VRY.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF679DLF bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF436PYK 11219042 ENCODE Processing Pipeline edb65ba4675caf857687c3f7a93f507a https://www.encodeproject.org/files/ENCFF679DLF/@@download/ENCFF679DLF.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF436PYK bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 6191704 ENCODE Processing Pipeline dfd4ddecf20c1deb9cf5c955f1208c50 https://www.encodeproject.org/files/ENCFF436PYK/@@download/ENCFF436PYK.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF826RWZ bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF095UEF, ENCFF481RQA, ENCFF581ZJL 6976755 ENCODE Processing Pipeline 119c463f64589438cdd39745a0d57bc8 https://www.encodeproject.org/files/ENCFF826RWZ/@@download/ENCFF826RWZ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF962DIA bigWig fold change over control ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF095UEF, ENCFF481RQA, ENCFF581ZJL 2136603348 ENCODE Processing Pipeline 5d352c7f4bd1cacdcdf93db7df02ee62 https://www.encodeproject.org/files/ENCFF962DIA/@@download/ENCFF962DIA.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF766PWX bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 5925779 ENCODE Processing Pipeline 4ab6a0de3a57b3c8f5aed0957747ab0a https://www.encodeproject.org/files/ENCFF766PWX/@@download/ENCFF766PWX.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF932XCP bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF826RWZ 11182212 ENCODE Processing Pipeline ec25b11f500c8ca039a5cc3e018b0985 https://www.encodeproject.org/files/ENCFF932XCP/@@download/ENCFF932XCP.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF289BJO bam unfiltered alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOZ, ENCFF002EGE, ENCFF643CGH 5016012627 ENCODE Processing Pipeline 0ebd832f6b973dd13245ae8312d05e52 https://www.encodeproject.org/files/ENCFF289BJO/@@download/ENCFF289BJO.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF659VBT bam unfiltered alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPH, ENCFF002EGD, ENCFF643CGH 5661468520 ENCODE Processing Pipeline 23a0851099daf9420c758913b0606cb6 https://www.encodeproject.org/files/ENCFF659VBT/@@download/ENCFF659VBT.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF548STV bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOZ, ENCFF002EGE, ENCFF643CGH 3464471563 ENCODE Processing Pipeline ab1f7585b1c690b8e0e13f230e654ff2 https://www.encodeproject.org/files/ENCFF548STV/@@download/ENCFF548STV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF350NUJ bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPH, ENCFF002EGD, ENCFF643CGH 4712081683 ENCODE Processing Pipeline cc41d836dc041b5a8ba6f36c7bd00569 https://www.encodeproject.org/files/ENCFF350NUJ/@@download/ENCFF350NUJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF290VKQ bigWig signal p-value ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF548STV, ENCFF910IKB 1109366834 ENCODE Processing Pipeline 43f7b90131b34c00f3f4216bd52837d8 https://www.encodeproject.org/files/ENCFF290VKQ/@@download/ENCFF290VKQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF235HYN bigWig signal p-value ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF350NUJ 1138118947 ENCODE Processing Pipeline 8ebaa4a5f7f8e77d99a44c2ff0bb8e18 https://www.encodeproject.org/files/ENCFF235HYN/@@download/ENCFF235HYN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF825MDH bigWig signal p-value ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF350NUJ, ENCFF548STV, ENCFF910IKB 1932541717 ENCODE Processing Pipeline 23be446973a8c1837aaef69381282e43 https://www.encodeproject.org/files/ENCFF825MDH/@@download/ENCFF825MDH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF274EPU bigWig fold change over control ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF548STV, ENCFF910IKB 1070823957 ENCODE Processing Pipeline 0a9d9224645f8f649b2fb2ab26543f3d https://www.encodeproject.org/files/ENCFF274EPU/@@download/ENCFF274EPU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF385NAI bigWig fold change over control ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF350NUJ 1238704044 ENCODE Processing Pipeline 1295053605e2613d70accf0c0560cb7a https://www.encodeproject.org/files/ENCFF385NAI/@@download/ENCFF385NAI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF580PSQ bigWig fold change over control ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF350NUJ, ENCFF548STV, ENCFF910IKB 2137389712 ENCODE Processing Pipeline 7031a209b768198489bf382d2965eb36 https://www.encodeproject.org/files/ENCFF580PSQ/@@download/ENCFF580PSQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF370QHV bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF548STV, ENCFF910IKB 5733001 ENCODE Processing Pipeline 3a48d9cf00b3a18e1ccaef13d57a2c3e https://www.encodeproject.org/files/ENCFF370QHV/@@download/ENCFF370QHV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF172NAU bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF350NUJ 6008035 ENCODE Processing Pipeline 91e7565e155fe24d76079c4c9ea7af8a https://www.encodeproject.org/files/ENCFF172NAU/@@download/ENCFF172NAU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF519QJO bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF350NUJ, ENCFF548STV, ENCFF910IKB 6917823 ENCODE Processing Pipeline 99f229de73ee1e73c9d58312fe45fe79 https://www.encodeproject.org/files/ENCFF519QJO/@@download/ENCFF519QJO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046SRO bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF370QHV 11335173 ENCODE Processing Pipeline b0b58bbbaf740d9942f9c5f1b285bb20 https://www.encodeproject.org/files/ENCFF046SRO/@@download/ENCFF046SRO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF611TZV bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF172NAU 11217727 ENCODE Processing Pipeline 1d50ba9edfe16c46313658ae5f0694c9 https://www.encodeproject.org/files/ENCFF611TZV/@@download/ENCFF611TZV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF016NKD bigBed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF519QJO 11199446 ENCODE Processing Pipeline cd84b636ece3150c1f4850ceac5d83b5 https://www.encodeproject.org/files/ENCFF016NKD/@@download/ENCFF016NKD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF264QLP bed narrowPeak conservative idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF172NAU, ENCFF370QHV, ENCFF419RSJ, ENCFF519QJO 60729 ENCODE Processing Pipeline 278fde192db149dc4113da0dc7ca0841 https://www.encodeproject.org/files/ENCFF264QLP/@@download/ENCFF264QLP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF020EXX bigBed narrowPeak conservative idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF264QLP 155070 ENCODE Processing Pipeline 5c67d29f85d41a00051fc1ef15849ec2 https://www.encodeproject.org/files/ENCFF020EXX/@@download/ENCFF020EXX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF545WXN bed narrowPeak optimal idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF172NAU, ENCFF370QHV, ENCFF419RSJ, ENCFF519QJO 97883 ENCODE Processing Pipeline 3b9c2426564898386263afe97322ba0d https://www.encodeproject.org/files/ENCFF545WXN/@@download/ENCFF545WXN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF187AEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF545WXN 206367 ENCODE Processing Pipeline 66d9387172b05794ea4d30847cf40122 https://www.encodeproject.org/files/ENCFF187AEJ/@@download/ENCFF187AEJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF750STT bigBed narrowPeak conservative idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF089MLX 140701 ENCODE Processing Pipeline 11b72299b8bbf66fbf2ec61e3bd61d28 https://www.encodeproject.org/files/ENCFF750STT/@@download/ENCFF750STT.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF089MLX bed narrowPeak conservative idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF436PYK, ENCFF766PWX, ENCFF826RWZ 51333 ENCODE Processing Pipeline ce4b88de4d6b5bc3ce3cbf87ad9fe12b https://www.encodeproject.org/files/ENCFF089MLX/@@download/ENCFF089MLX.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF467ITU bigBed narrowPeak optimal idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF804ABO 183054 ENCODE Processing Pipeline c82de4cb57f09cf50ef43fce7eb3636c https://www.encodeproject.org/files/ENCFF467ITU/@@download/ENCFF467ITU.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF804ABO bed narrowPeak optimal idr thresholded peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF436PYK, ENCFF766PWX, ENCFF826RWZ 82785 ENCODE Processing Pipeline 148481b2344282d1938e29f26cd718b8 https://www.encodeproject.org/files/ENCFF804ABO/@@download/ENCFF804ABO.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000XLF bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XLR 355553255 Michael Snyder, Stanford 766316841c0e3d36b5fb9ed6311cb7c4 https://www.encodeproject.org/files/ENCFF000XLF/@@download/ENCFF000XLF.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF000XLG bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJG 89891 Michael Snyder, Stanford 6d2364975829728f1cafe84c96e703cf https://www.encodeproject.org/files/ENCFF000XLG/@@download/ENCFF000XLG.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF000XLH bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XLU 449529370 Michael Snyder, Stanford 1d71a5188fd1527c0085ea8d9cb7fdb3 https://www.encodeproject.org/files/ENCFF000XLH/@@download/ENCFF000XLH.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF000XLJ bigWig signal ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 299838814 Michael Snyder, Stanford 0918622a60dde57df33e034615eadcfb https://www.encodeproject.org/files/ENCFF000XLJ/@@download/ENCFF000XLJ.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from ENCFF000XLR fastq reads ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 929174272 Michael Snyder, Stanford 860bdd770025664bc4c2553f2c14d402 https://www.encodeproject.org/files/ENCFF000XLR/@@download/ENCFF000XLR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000XLU fastq reads ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1158180064 Michael Snyder, Stanford 885773aeaf5daa98e919155f599048dc https://www.encodeproject.org/files/ENCFF000XLU/@@download/ENCFF000XLU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF001VJG bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 5626 Michael Snyder, Stanford eb5b23152e93e7797c3bdfc40a77f600 https://www.encodeproject.org/files/ENCFF001VJG/@@download/ENCFF001VJG.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CTF bed narrowPeak optimal idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 93635 ENCODE Consortium Analysis Working Group e749fee4dcd60de57f9a63605a6d5cc3 https://www.encodeproject.org/files/ENCFF002CTF/@@download/ENCFF002CTF.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, biological replicates with identical biosample ENCFF644RID bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTF 262756 ENCODE Consortium f0ac9d6a088dbd95327573009e8217c5 https://www.encodeproject.org/files/ENCFF644RID/@@download/ENCFF644RID.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF838XJC bam unfiltered alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 30 ENCFF000XLR, ENCFF807MUK 958799247 ENCODE Processing Pipeline b8b85e167b45315c513f16b717ff0d45 https://www.encodeproject.org/files/ENCFF838XJC/@@download/ENCFF838XJC.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF712CHE bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 30 ENCFF000XLR, ENCFF807MUK 452964698 ENCODE Processing Pipeline 59139a40cf96dbba4ac3b11bd878bcd9 https://www.encodeproject.org/files/ENCFF712CHE/@@download/ENCFF712CHE.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF271QPA bam unfiltered alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 30 ENCFF000XLU, ENCFF643CGH 1219951098 ENCODE Processing Pipeline 24f71d7e635c4de064acfc0793c1768c https://www.encodeproject.org/files/ENCFF271QPA/@@download/ENCFF271QPA.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF695PBX bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 30 ENCFF000XLU, ENCFF643CGH 619607598 ENCODE Processing Pipeline c9bdf40a39f488cc1a918347b8f5665b https://www.encodeproject.org/files/ENCFF695PBX/@@download/ENCFF695PBX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF790CDO bam unfiltered alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 30 ENCFF000XLR, ENCFF643CGH 962422275 ENCODE Processing Pipeline 423ff13d0f4819f40a267d18d09c3b71 https://www.encodeproject.org/files/ENCFF790CDO/@@download/ENCFF790CDO.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF558RNX bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 30 ENCFF000XLR, ENCFF643CGH 452564345 ENCODE Processing Pipeline ab398a589ab89ebcb59ad9c0d057936c https://www.encodeproject.org/files/ENCFF558RNX/@@download/ENCFF558RNX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF146TLV bam unfiltered alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 30 ENCFF000XLU, ENCFF807MUK 1214566481 ENCODE Processing Pipeline 30b09886911d575d76ca05559c88cf0c https://www.encodeproject.org/files/ENCFF146TLV/@@download/ENCFF146TLV.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF765DQW bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 30 ENCFF000XLU, ENCFF807MUK 620143733 ENCODE Processing Pipeline 3f39b31c290e2dd729119fec890f049f https://www.encodeproject.org/files/ENCFF765DQW/@@download/ENCFF765DQW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF513SAI bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF712CHE, ENCFF814FCQ 3459697 ENCODE Processing Pipeline aa7a3604bb5a36eecdb1213b9b6b8acf https://www.encodeproject.org/files/ENCFF513SAI/@@download/ENCFF513SAI.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF010UIT bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF712CHE, ENCFF765DQW, ENCFF814FCQ 3928307 ENCODE Processing Pipeline 44668013b9c4a3905a075c39ec48c6cc https://www.encodeproject.org/files/ENCFF010UIT/@@download/ENCFF010UIT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF612ASR bed narrowPeak optimal idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF010UIT, ENCFF045IZP, ENCFF513SAI 1592 ENCODE Processing Pipeline 3ef5cf31627cfec40dcf07a18cd7122d https://www.encodeproject.org/files/ENCFF612ASR/@@download/ENCFF612ASR.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF589YRQ bigWig signal p-value ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF712CHE, ENCFF765DQW, ENCFF814FCQ 353825084 ENCODE Processing Pipeline 153964a970824a859b495bf296eb3705 https://www.encodeproject.org/files/ENCFF589YRQ/@@download/ENCFF589YRQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF367TJD bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF010UIT 10213128 ENCODE Processing Pipeline 8605218e8392c7398bd9620adccd64b1 https://www.encodeproject.org/files/ENCFF367TJD/@@download/ENCFF367TJD.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF885FLY bed narrowPeak conservative idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF010UIT, ENCFF045IZP, ENCFF513SAI 1094 ENCODE Processing Pipeline 13274efc525ad2e5e3040db0514638a1 https://www.encodeproject.org/files/ENCFF885FLY/@@download/ENCFF885FLY.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF360MQA bigWig fold change over control ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF712CHE, ENCFF814FCQ 209201299 ENCODE Processing Pipeline a4a5b0297b6feac00de01a18497a1d8f https://www.encodeproject.org/files/ENCFF360MQA/@@download/ENCFF360MQA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF654VAM bigWig signal p-value ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF765DQW, ENCFF814FCQ 319537259 ENCODE Processing Pipeline 9635fefd1b79b057b292c679d3304237 https://www.encodeproject.org/files/ENCFF654VAM/@@download/ENCFF654VAM.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF952JFB bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF045IZP 9693640 ENCODE Processing Pipeline e443cc0de638104e2688fd9bcbfdeed1 https://www.encodeproject.org/files/ENCFF952JFB/@@download/ENCFF952JFB.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF991DYQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF885FLY 43879 ENCODE Processing Pipeline 23e890ff9215cf21122c548d77400afb https://www.encodeproject.org/files/ENCFF991DYQ/@@download/ENCFF991DYQ.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF113FKR bigWig signal p-value ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF712CHE, ENCFF814FCQ 347769120 ENCODE Processing Pipeline 2a93d01b29023eb8b5b765d516d5d6a7 https://www.encodeproject.org/files/ENCFF113FKR/@@download/ENCFF113FKR.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF493IZD bigWig fold change over control ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF765DQW, ENCFF814FCQ 268738901 ENCODE Processing Pipeline d0638f6d1334226ab1b8b915f63fddad https://www.encodeproject.org/files/ENCFF493IZD/@@download/ENCFF493IZD.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF181FPS bigWig fold change over control ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF712CHE, ENCFF765DQW, ENCFF814FCQ 422382491 ENCODE Processing Pipeline 531d853eeaa2a0ce0ce0dd4a6b1fd9f6 https://www.encodeproject.org/files/ENCFF181FPS/@@download/ENCFF181FPS.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF045IZP bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF765DQW, ENCFF814FCQ 3666746 ENCODE Processing Pipeline a3e4c5b011aa63df33f006abc1ce2653 https://www.encodeproject.org/files/ENCFF045IZP/@@download/ENCFF045IZP.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF202DAM bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513SAI 7076918 ENCODE Processing Pipeline 0d0a15206319c942861833b159d5d4aa https://www.encodeproject.org/files/ENCFF202DAM/@@download/ENCFF202DAM.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF877DHU bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF612ASR 31548 ENCODE Processing Pipeline 50074212a58b56b706b97486c19b6456 https://www.encodeproject.org/files/ENCFF877DHU/@@download/ENCFF877DHU.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF044PLF bigWig signal p-value ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF390CZH, ENCFF558RNX 280250929 ENCODE Processing Pipeline 00288f75f314abacf5eb87eb7cd7dd05 https://www.encodeproject.org/files/ENCFF044PLF/@@download/ENCFF044PLF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF013IDD bigWig fold change over control ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF390CZH, ENCFF558RNX 208856438 ENCODE Processing Pipeline ceb538aad38888c067a6cc0521a87a4f https://www.encodeproject.org/files/ENCFF013IDD/@@download/ENCFF013IDD.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF233YTC bigWig signal p-value ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF390CZH, ENCFF695PBX 319226662 ENCODE Processing Pipeline f52a55ea69210fb558299ff5851ad91f https://www.encodeproject.org/files/ENCFF233YTC/@@download/ENCFF233YTC.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF739AVD bigWig signal p-value ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF390CZH, ENCFF558RNX, ENCFF695PBX 353577704 ENCODE Processing Pipeline 08114f0b630854b746aa9091ed2f5a77 https://www.encodeproject.org/files/ENCFF739AVD/@@download/ENCFF739AVD.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF859EUD bigWig fold change over control ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF390CZH, ENCFF695PBX 268276715 ENCODE Processing Pipeline c1c6bfc122c2bf2199dee787ec199152 https://www.encodeproject.org/files/ENCFF859EUD/@@download/ENCFF859EUD.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF732ODU bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF390CZH, ENCFF558RNX 3457479 ENCODE Processing Pipeline 7c1cd451255792cbf61694577c62fe02 https://www.encodeproject.org/files/ENCFF732ODU/@@download/ENCFF732ODU.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF511MPF bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF732ODU 7083989 ENCODE Processing Pipeline 9145390be53d640789642c712f82748e https://www.encodeproject.org/files/ENCFF511MPF/@@download/ENCFF511MPF.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF703ZFU bigWig fold change over control ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF390CZH, ENCFF558RNX, ENCFF695PBX 423789748 ENCODE Processing Pipeline 9db737cad112beecfbf8bde23e9068fe https://www.encodeproject.org/files/ENCFF703ZFU/@@download/ENCFF703ZFU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF662GLP bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF390CZH, ENCFF558RNX, ENCFF695PBX 3921635 ENCODE Processing Pipeline 1ca0a1538249e913dc7814962d63be02 https://www.encodeproject.org/files/ENCFF662GLP/@@download/ENCFF662GLP.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF044DFE bed narrowPeak optimal idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF662GLP, ENCFF679MJG, ENCFF732ODU 1575 ENCODE Processing Pipeline 4dded9562fd479cf09eaea476f558abc https://www.encodeproject.org/files/ENCFF044DFE/@@download/ENCFF044DFE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF004MGF bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF679MJG 9700538 ENCODE Processing Pipeline 4bdfedca28f1b95f050dc7cd5028ff57 https://www.encodeproject.org/files/ENCFF004MGF/@@download/ENCFF004MGF.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF970SAI bigBed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF662GLP 10208662 ENCODE Processing Pipeline 06e85c9456101b5b4bb25652d685f4dc https://www.encodeproject.org/files/ENCFF970SAI/@@download/ENCFF970SAI.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF582PXF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF044DFE 79548 ENCODE Processing Pipeline 732fc8edef6e26386a57899df53fc615 https://www.encodeproject.org/files/ENCFF582PXF/@@download/ENCFF582PXF.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF679MJG bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF390CZH, ENCFF695PBX 3662998 ENCODE Processing Pipeline d966fd0c198bd72197a47b9a05aece35 https://www.encodeproject.org/files/ENCFF679MJG/@@download/ENCFF679MJG.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF540RUA bed narrowPeak conservative idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF662GLP, ENCFF679MJG, ENCFF732ODU 1036 ENCODE Processing Pipeline 012d38f88268db5a80904c966a384314 https://www.encodeproject.org/files/ENCFF540RUA/@@download/ENCFF540RUA.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF419SVN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF540RUA 23798 ENCODE Processing Pipeline 66f242e71c7171f5991a4a7ce9b9850b https://www.encodeproject.org/files/ENCFF419SVN/@@download/ENCFF419SVN.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF707ZID bam unfiltered alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAR, ENCFF807MUK 1141179536 ENCODE Processing Pipeline 8f3fefc04f209da4d3b8e5c0a4ee7808 https://www.encodeproject.org/files/ENCFF707ZID/@@download/ENCFF707ZID.bam hg19 released low read length, low read depth ENCFF900INN bam unfiltered alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAV, ENCFF807MUK 1260695689 ENCODE Processing Pipeline 6932235a1c0883abd1fc9c549b7abfe4 https://www.encodeproject.org/files/ENCFF900INN/@@download/ENCFF900INN.bam hg19 released low read length, low read depth ENCFF002EAR fastq reads ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 799914478 Michael Snyder, Stanford 679ecbf96d322131410eeb7fba8955fb SRA:SRR5111286 https://www.encodeproject.org/files/ENCFF002EAR/@@download/ENCFF002EAR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, low read depth ENCFF002EAV fastq reads ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 874739870 Michael Snyder, Stanford 8965c8f42b2d1a07513fded672eccc62 SRA:SRR5111285 https://www.encodeproject.org/files/ENCFF002EAV/@@download/ENCFF002EAV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, low read depth ENCFF849ALO bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAV, ENCFF807MUK 867675059 ENCODE Processing Pipeline 11ebd368cf4b047f98d1fe7e0afe4b82 https://www.encodeproject.org/files/ENCFF849ALO/@@download/ENCFF849ALO.bam hg19 released low read length, low read depth ENCFF204YCT bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAR, ENCFF807MUK 777969751 ENCODE Processing Pipeline 963319c43327c76f214b0a274d5fc5bb https://www.encodeproject.org/files/ENCFF204YCT/@@download/ENCFF204YCT.bam hg19 released low read length, low read depth ENCFF272NYQ bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 527894983 ENCODE Processing Pipeline 242c043eb1cb3acf727f17dccdb1a17e https://www.encodeproject.org/files/ENCFF272NYQ/@@download/ENCFF272NYQ.bigWig hg19 released low read length, low read depth ENCFF610VBZ bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF204YCT, ENCFF863VMN 495800264 ENCODE Processing Pipeline b9d90e12ceebee2384d084d78446a792 https://www.encodeproject.org/files/ENCFF610VBZ/@@download/ENCFF610VBZ.bigWig hg19 archived low read length, low read depth ENCFF141LIS bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF204YCT, ENCFF817NEK, ENCFF849ALO, ENCFF863VMN 944317389 ENCODE Processing Pipeline cf8fa51cbf4925d289f5d002c2b921f0 https://www.encodeproject.org/files/ENCFF141LIS/@@download/ENCFF141LIS.bigWig hg19 archived low read length, low read depth ENCFF673ECD bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 472651460 ENCODE Processing Pipeline 21d9d962195b20b60299cf2b1cb2b0e7 https://www.encodeproject.org/files/ENCFF673ECD/@@download/ENCFF673ECD.bigWig hg19 released low read length, low read depth ENCFF311BEM bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF204YCT, ENCFF817NEK, ENCFF849ALO, ENCFF863VMN 1030422799 ENCODE Processing Pipeline 4225e39aea722191e24b471d412e9ec4 https://www.encodeproject.org/files/ENCFF311BEM/@@download/ENCFF311BEM.bigWig hg19 archived low read length, low read depth ENCFF943SXX bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF204YCT, ENCFF863VMN 347177485 ENCODE Processing Pipeline 6dd5ea091e94c59dc34078945d28e99f https://www.encodeproject.org/files/ENCFF943SXX/@@download/ENCFF943SXX.bigWig hg19 archived low read length, low read depth ENCFF489KKG bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 4843098 ENCODE Processing Pipeline 80c90deee256f00d680c32793f0ce768 https://www.encodeproject.org/files/ENCFF489KKG/@@download/ENCFF489KKG.bed.gz hg19 archived low read length, low read depth ENCFF155XFE bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF204YCT, ENCFF863VMN 4832799 ENCODE Processing Pipeline 26e2e50b758dfebc9a183319eb245aae https://www.encodeproject.org/files/ENCFF155XFE/@@download/ENCFF155XFE.bed.gz hg19 archived low read length, low read depth ENCFF702BFO bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF489KKG 11110972 ENCODE Processing Pipeline fb65851bc7fadfbbe2f79c22dc9d7f3a https://www.encodeproject.org/files/ENCFF702BFO/@@download/ENCFF702BFO.bigBed hg19 archived low read length, low read depth ENCFF118HPX bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF138YIB 11409070 ENCODE Processing Pipeline be19aa2d4c1881a96b64e9fd78c30874 https://www.encodeproject.org/files/ENCFF118HPX/@@download/ENCFF118HPX.bigBed hg19 archived low read length, low read depth ENCFF138YIB bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF204YCT, ENCFF817NEK, ENCFF849ALO, ENCFF863VMN 6291891 ENCODE Processing Pipeline a699c503b7e7b12e3f88e65faed3f19e https://www.encodeproject.org/files/ENCFF138YIB/@@download/ENCFF138YIB.bed.gz hg19 archived low read length, low read depth ENCFF876TSI bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF155XFE 11150887 ENCODE Processing Pipeline ae615e1b0540b86ee98f90ffe8c2f2bf https://www.encodeproject.org/files/ENCFF876TSI/@@download/ENCFF876TSI.bigBed hg19 archived low read length, low read depth ENCFF557PDF bam unfiltered alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAR, ENCFF643CGH 1146543632 ENCODE Processing Pipeline ee9e4da38027cf37bed5b759aa739dba https://www.encodeproject.org/files/ENCFF557PDF/@@download/ENCFF557PDF.bam GRCh38 released low read length, low read depth ENCFF749NTQ bam unfiltered alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAV, ENCFF643CGH 1267238564 ENCODE Processing Pipeline 4efdae9c39733f082fe8159becb76e0a https://www.encodeproject.org/files/ENCFF749NTQ/@@download/ENCFF749NTQ.bam GRCh38 released low read length, low read depth ENCFF368FEM bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAR, ENCFF643CGH 777566319 ENCODE Processing Pipeline 52aafdc446c32b3c0761c09c5b6fa945 https://www.encodeproject.org/files/ENCFF368FEM/@@download/ENCFF368FEM.bam GRCh38 released low read length, low read depth ENCFF705TRN bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAV, ENCFF643CGH 867216748 ENCODE Processing Pipeline c32bbdfbd8536797a889c6ca123839aa https://www.encodeproject.org/files/ENCFF705TRN/@@download/ENCFF705TRN.bam GRCh38 released low read length, low read depth ENCFF726NLT bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF536CTV, ENCFF705TRN 542066793 ENCODE Processing Pipeline 3931bcaabb753720f26bf94bc98e7d59 https://www.encodeproject.org/files/ENCFF726NLT/@@download/ENCFF726NLT.bigWig GRCh38 released low read length, low read depth ENCFF275IPS bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF368FEM, ENCFF511RLN 518269522 ENCODE Processing Pipeline a7542710aa4dedafe7a58a0f7b43e647 https://www.encodeproject.org/files/ENCFF275IPS/@@download/ENCFF275IPS.bigWig GRCh38 released low read length, low read depth ENCFF955DVB bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF368FEM, ENCFF511RLN, ENCFF536CTV, ENCFF705TRN 1025690265 ENCODE Processing Pipeline 68058eb4ff8032d82983e1b04ea4d659 https://www.encodeproject.org/files/ENCFF955DVB/@@download/ENCFF955DVB.bigWig GRCh38 released low read length, low read depth ENCFF922MUD bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF536CTV, ENCFF705TRN 481278299 ENCODE Processing Pipeline 52c9382f9b80851a571d6aa9b723d934 https://www.encodeproject.org/files/ENCFF922MUD/@@download/ENCFF922MUD.bigWig GRCh38 released low read length, low read depth ENCFF239NTL bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF368FEM, ENCFF511RLN 408610973 ENCODE Processing Pipeline 25298d3ef16435313639af8ec67a085d https://www.encodeproject.org/files/ENCFF239NTL/@@download/ENCFF239NTL.bigWig GRCh38 released low read length, low read depth ENCFF713BPL bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF368FEM, ENCFF511RLN, ENCFF536CTV, ENCFF705TRN 1056501556 ENCODE Processing Pipeline 9a75c1824f8b0763fea7c8774285a133 https://www.encodeproject.org/files/ENCFF713BPL/@@download/ENCFF713BPL.bigWig GRCh38 released low read length, low read depth ENCFF866VOW bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF536CTV, ENCFF705TRN 4557712 ENCODE Processing Pipeline c7efbf0511b945bb625b868546d56c47 https://www.encodeproject.org/files/ENCFF866VOW/@@download/ENCFF866VOW.bed.gz GRCh38 released low read length, low read depth ENCFF584KLX bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF368FEM, ENCFF511RLN 4627052 ENCODE Processing Pipeline 5b0a60ef73587b9335dfbb605df862cb https://www.encodeproject.org/files/ENCFF584KLX/@@download/ENCFF584KLX.bed.gz GRCh38 released low read length, low read depth ENCFF825CEG bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF368FEM, ENCFF511RLN, ENCFF536CTV, ENCFF705TRN 6061711 ENCODE Processing Pipeline 1452e8b690caf36eb28fcde8c0f42cf3 https://www.encodeproject.org/files/ENCFF825CEG/@@download/ENCFF825CEG.bed.gz GRCh38 released low read length, low read depth ENCFF505XMD bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF866VOW 10921650 ENCODE Processing Pipeline 50dc47dc1219641c4855954d8d46796d https://www.encodeproject.org/files/ENCFF505XMD/@@download/ENCFF505XMD.bigBed GRCh38 released low read length, low read depth ENCFF726QJB bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF584KLX 10998413 ENCODE Processing Pipeline 843d4b733796527d1e4287f93b3efcaf https://www.encodeproject.org/files/ENCFF726QJB/@@download/ENCFF726QJB.bigBed GRCh38 released low read length, low read depth ENCFF126WSJ bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF825CEG 11397653 ENCODE Processing Pipeline 84e9865eedf77c0f9a79f3ad7a9d7513 https://www.encodeproject.org/files/ENCFF126WSJ/@@download/ENCFF126WSJ.bigBed GRCh38 released low read length, low read depth ENCFF361VMN bigBed narrowPeak conservative idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF377FEJ 124603 ENCODE Processing Pipeline 96e96af57846a8812e558d116ca158f4 https://www.encodeproject.org/files/ENCFF361VMN/@@download/ENCFF361VMN.bigBed GRCh38 released low read length, low read depth ENCFF377FEJ bed narrowPeak conservative idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF584KLX, ENCFF825CEG, ENCFF866VOW 42693 ENCODE Processing Pipeline 3f9635c61c89c1d9d65251748e30aced https://www.encodeproject.org/files/ENCFF377FEJ/@@download/ENCFF377FEJ.bed.gz GRCh38 released low read length, low read depth ENCFF876GXQ bed narrowPeak optimal idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF584KLX, ENCFF825CEG, ENCFF866VOW 48748 ENCODE Processing Pipeline fe59323ab283fa9545532286436fb9d5 https://www.encodeproject.org/files/ENCFF876GXQ/@@download/ENCFF876GXQ.bed.gz GRCh38 released low read length, low read depth ENCFF077TEP bigBed narrowPeak optimal idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF876GXQ 132926 ENCODE Processing Pipeline 7dc9e469d96fd067615ef09e48c52370 https://www.encodeproject.org/files/ENCFF077TEP/@@download/ENCFF077TEP.bigBed GRCh38 released low read length, low read depth ENCFF971ARX bed narrowPeak conservative idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF138YIB, ENCFF155XFE, ENCFF489KKG 35521 ENCODE Processing Pipeline b5288e9bffffe56eee8b6701a4098e78 https://www.encodeproject.org/files/ENCFF971ARX/@@download/ENCFF971ARX.bed.gz hg19 archived low read length, low read depth ENCFF852IUW bigBed narrowPeak optimal idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF699VTO 126504 ENCODE Processing Pipeline 2b168109db406a31f8a9fa8106cae319 https://www.encodeproject.org/files/ENCFF852IUW/@@download/ENCFF852IUW.bigBed hg19 archived low read length, low read depth ENCFF488KZN bigBed narrowPeak conservative idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF971ARX 114414 ENCODE Processing Pipeline 976f149e459583c855e7ee532d6af3d0 https://www.encodeproject.org/files/ENCFF488KZN/@@download/ENCFF488KZN.bigBed hg19 archived low read length, low read depth ENCFF699VTO bed narrowPeak optimal idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF138YIB, ENCFF155XFE, ENCFF489KKG 43926 ENCODE Processing Pipeline 9a41d61d15754115a3ad3a8dcc0af86c https://www.encodeproject.org/files/ENCFF699VTO/@@download/ENCFF699VTO.bed.gz hg19 archived low read length, low read depth ENCFF271END bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF204YCT, ENCFF817NEK, ENCFF849ALO, ENCFF863VMN 938621635 ENCODE Processing Pipeline c15e525774af624f92b707618eab39ac https://www.encodeproject.org/files/ENCFF271END/@@download/ENCFF271END.bigWig hg19 released low read length, low read depth ENCFF668OYN bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF204YCT, ENCFF863VMN 408606961 ENCODE Processing Pipeline 55adf5d8ecde87eb8a82b208588454bc https://www.encodeproject.org/files/ENCFF668OYN/@@download/ENCFF668OYN.bigWig hg19 released low read length, low read depth ENCFF808UFI bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF204YCT, ENCFF863VMN 4665863 ENCODE Processing Pipeline 05a1d8dc98f7e36fc6dfc4ab0c041781 https://www.encodeproject.org/files/ENCFF808UFI/@@download/ENCFF808UFI.bed.gz hg19 released low read length, low read depth ENCFF616TJI bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF808UFI 11006529 ENCODE Processing Pipeline e08bc612ba20cfc799b844497976c2d8 https://www.encodeproject.org/files/ENCFF616TJI/@@download/ENCFF616TJI.bigBed hg19 released low read length, low read depth ENCFF998FXO bigBed narrowPeak optimal idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF694UJI 132504 ENCODE Processing Pipeline 2714a085c4433621af754afc031d1faf https://www.encodeproject.org/files/ENCFF998FXO/@@download/ENCFF998FXO.bigBed hg19 released low read length, low read depth ENCFF694UJI bed narrowPeak optimal idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF266NSN, ENCFF401ZKP, ENCFF808UFI 48543 ENCODE Processing Pipeline 8c61a3021ba1648497bcc6c7e1a1d4d7 https://www.encodeproject.org/files/ENCFF694UJI/@@download/ENCFF694UJI.bed.gz hg19 released low read length, low read depth ENCFF401ZKP bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 4606728 ENCODE Processing Pipeline 6fe2713e4cc421da4f8e405aa90ad408 https://www.encodeproject.org/files/ENCFF401ZKP/@@download/ENCFF401ZKP.bed.gz hg19 released low read length, low read depth ENCFF830JVZ bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF401ZKP 10944736 ENCODE Processing Pipeline 971205e03d4b9b5e23780b8fe7f3dad1 https://www.encodeproject.org/files/ENCFF830JVZ/@@download/ENCFF830JVZ.bigBed hg19 released low read length, low read depth ENCFF975IYY bigBed narrowPeak conservative idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF424MNR 120661 ENCODE Processing Pipeline f7af8a8fed09280bb97409306b84b2db https://www.encodeproject.org/files/ENCFF975IYY/@@download/ENCFF975IYY.bigBed hg19 released low read length, low read depth ENCFF424MNR bed narrowPeak conservative idr thresholded peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF266NSN, ENCFF401ZKP, ENCFF808UFI 40155 ENCODE Processing Pipeline 1fb8d0e6c61e5d03665d36f5a9273dc1 https://www.encodeproject.org/files/ENCFF424MNR/@@download/ENCFF424MNR.bed.gz hg19 released low read length, low read depth ENCFF405UQK bigWig signal p-value ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 ENCFF204YCT, ENCFF863VMN 480794833 ENCODE Processing Pipeline 1fef338c419d94fff44136b35b1b7ce8 https://www.encodeproject.org/files/ENCFF405UQK/@@download/ENCFF405UQK.bigWig hg19 released low read length, low read depth ENCFF020GQZ bigWig fold change over control ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF204YCT, ENCFF817NEK, ENCFF849ALO, ENCFF863VMN 1015468262 ENCODE Processing Pipeline a83eebc14a4c327503d0af530c5898ad https://www.encodeproject.org/files/ENCFF020GQZ/@@download/ENCFF020GQZ.bigWig hg19 released low read length, low read depth ENCFF416ELN bigBed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF266NSN 11394003 ENCODE Processing Pipeline 08cf05c184aa0dd191d648b87b42d8c7 https://www.encodeproject.org/files/ENCFF416ELN/@@download/ENCFF416ELN.bigBed hg19 released low read length, low read depth ENCFF266NSN bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF204YCT, ENCFF817NEK, ENCFF849ALO, ENCFF863VMN 6066309 ENCODE Processing Pipeline 6b00a8742417e0a82687e4309d73f42e https://www.encodeproject.org/files/ENCFF266NSN/@@download/ENCFF266NSN.bed.gz hg19 released low read length, low read depth ENCFF750VZA fastq reads ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 1 36 single-ended 932530652 Bradley Bernstein, Broad 5a05b244d4eeebf0528347dd5e5d5526 SRA:SRR6212669 https://www.encodeproject.org/files/ENCFF750VZA/@@download/ENCFF750VZA.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, mild to moderate bottlenecking ENCFF215QNG fastq reads ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 1 36 single-ended 1538619759 Bradley Bernstein, Broad e467c4ab7f55df4b727a14c44d885907 SRA:SRR6212670 https://www.encodeproject.org/files/ENCFF215QNG/@@download/ENCFF215QNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, mild to moderate bottlenecking, inconsistent control read length ENCFF989EPR fastq reads ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 2 36 single-ended 1310629529 Bradley Bernstein, Broad 70aea3382181a46c49e17c47800b7034 SRA:SRR6212668 https://www.encodeproject.org/files/ENCFF989EPR/@@download/ENCFF989EPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, mild to moderate bottlenecking, inconsistent control read length ENCFF612YGW bam unfiltered alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 36 ENCFF750VZA, ENCFF807MUK 1282880810 ENCODE Processing Pipeline 89bd68bb306442f7f003cb2ca206a9e1 https://www.encodeproject.org/files/ENCFF612YGW/@@download/ENCFF612YGW.bam hg19 released low read length, mild to moderate bottlenecking ENCFF329HCO bam unfiltered alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF750VZA 1294768916 ENCODE Processing Pipeline 3e2557d674d4748afd97fcd8b772b1e3 https://www.encodeproject.org/files/ENCFF329HCO/@@download/ENCFF329HCO.bam GRCh38 released low read length, mild to moderate bottlenecking ENCFF367ZGL bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF750VZA 794137418 ENCODE Processing Pipeline 66493ab92bce64218f402427491ae927 https://www.encodeproject.org/files/ENCFF367ZGL/@@download/ENCFF367ZGL.bam GRCh38 released low read length, mild to moderate bottlenecking ENCFF671PJB bam unfiltered alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 36 ENCFF215QNG, ENCFF807MUK, ENCFF989EPR 3594778603 ENCODE Processing Pipeline 0dcbdd6f6f00fffdc0eb38b066ddcd32 https://www.encodeproject.org/files/ENCFF671PJB/@@download/ENCFF671PJB.bam hg19 released low read length, mild to moderate bottlenecking ENCFF787ZXB bam unfiltered alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 36 ENCFF215QNG, ENCFF643CGH, ENCFF989EPR 3611936935 ENCODE Processing Pipeline 756f589c15cbf6293586ea7475f03b48 https://www.encodeproject.org/files/ENCFF787ZXB/@@download/ENCFF787ZXB.bam GRCh38 released low read length, mild to moderate bottlenecking ENCFF320ABW bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 36 ENCFF750VZA, ENCFF807MUK 794361095 ENCODE Processing Pipeline f2dd195b93da35852db20f675de88d77 https://www.encodeproject.org/files/ENCFF320ABW/@@download/ENCFF320ABW.bam hg19 released low read length, mild to moderate bottlenecking ENCFF837FXP bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 36 ENCFF215QNG, ENCFF807MUK, ENCFF989EPR 2241549272 ENCODE Processing Pipeline 475bb599cc0647f045bdf9ca5fea45d5 https://www.encodeproject.org/files/ENCFF837FXP/@@download/ENCFF837FXP.bam hg19 released low read length, mild to moderate bottlenecking ENCFF627NWR bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 36 ENCFF215QNG, ENCFF643CGH, ENCFF989EPR 2241034332 ENCODE Processing Pipeline 1ec81b80dc538ceff1d047604be0f42b https://www.encodeproject.org/files/ENCFF627NWR/@@download/ENCFF627NWR.bam GRCh38 released low read length, mild to moderate bottlenecking ENCFF365KOV bigWig fold change over control ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF837FXP 1481243570 ENCODE Processing Pipeline 9fc2884927524408efaa861681cad0b1 https://www.encodeproject.org/files/ENCFF365KOV/@@download/ENCFF365KOV.bigWig hg19 released low read length, mild to moderate bottlenecking ENCFF962TLV bigWig signal p-value ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF837FXP 1388573740 ENCODE Processing Pipeline 9fe5283ff56244ca91f83f00edfb4a3f https://www.encodeproject.org/files/ENCFF962TLV/@@download/ENCFF962TLV.bigWig hg19 released low read length, mild to moderate bottlenecking ENCFF724SIZ bigWig signal p-value ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL 1022069488 ENCODE Processing Pipeline 64da32b5911cb51e42ee706dcd20222d https://www.encodeproject.org/files/ENCFF724SIZ/@@download/ENCFF724SIZ.bigWig hg19 released low read length, mild to moderate bottlenecking ENCFF881RQW bigWig fold change over control ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL 961258616 ENCODE Processing Pipeline 289765a380c3e883995f2c31b9486a03 https://www.encodeproject.org/files/ENCFF881RQW/@@download/ENCFF881RQW.bigWig hg19 released low read length, mild to moderate bottlenecking ENCFF607HXK bigWig signal p-value ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL, ENCFF837FXP 1424094381 ENCODE Processing Pipeline 6a5934d58577981c2153340630408620 https://www.encodeproject.org/files/ENCFF607HXK/@@download/ENCFF607HXK.bigWig hg19 released low read length, mild to moderate bottlenecking ENCFF486SFW bigWig fold change over control ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL, ENCFF837FXP 1775536299 ENCODE Processing Pipeline 78a34ebbf98175fde2dfcb76ec475f26 https://www.encodeproject.org/files/ENCFF486SFW/@@download/ENCFF486SFW.bigWig hg19 released low read length, mild to moderate bottlenecking ENCFF758VXC bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL, ENCFF837FXP 7089909 ENCODE Processing Pipeline 1b2077996f478dfb112290f806e2c220 https://www.encodeproject.org/files/ENCFF758VXC/@@download/ENCFF758VXC.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF574VQK bigBed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF758VXC 12312878 ENCODE Processing Pipeline 5ea169ca518255d403cebce30d19338e https://www.encodeproject.org/files/ENCFF574VQK/@@download/ENCFF574VQK.bigBed hg19 released low read length, mild to moderate bottlenecking ENCFF568WND bed narrowPeak conservative idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF566XPO, ENCFF758VXC, ENCFF949QLM 584974 ENCODE Processing Pipeline 2505483c8deaffb10358494843b64b56 https://www.encodeproject.org/files/ENCFF568WND/@@download/ENCFF568WND.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF868XQN bigBed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF949QLM 12702114 ENCODE Processing Pipeline 68f38395e03224c725e7b1979a8b0140 https://www.encodeproject.org/files/ENCFF868XQN/@@download/ENCFF868XQN.bigBed hg19 released low read length, mild to moderate bottlenecking ENCFF774RJV bigBed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF566XPO 12049739 ENCODE Processing Pipeline a275bc8260f7bdc6ba29c95d25a9c4d7 https://www.encodeproject.org/files/ENCFF774RJV/@@download/ENCFF774RJV.bigBed hg19 released low read length, mild to moderate bottlenecking ENCFF566XPO bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL 6937675 ENCODE Processing Pipeline 38d46dcfcd1b64bf533d333e3d2ba03d https://www.encodeproject.org/files/ENCFF566XPO/@@download/ENCFF566XPO.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF531GPP bigBed narrowPeak conservative idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF568WND 1277953 ENCODE Processing Pipeline 2ca065b646d5143b634cfce3289b893a https://www.encodeproject.org/files/ENCFF531GPP/@@download/ENCFF531GPP.bigBed hg19 released low read length, mild to moderate bottlenecking ENCFF613LYW bed narrowPeak optimal idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF566XPO, ENCFF758VXC, ENCFF949QLM 878411 ENCODE Processing Pipeline 2518fc77293383b885ca5e85d886d5d4 https://www.encodeproject.org/files/ENCFF613LYW/@@download/ENCFF613LYW.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF707CZI bigBed narrowPeak optimal idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF613LYW 1788151 ENCODE Processing Pipeline b3e88c0a4ec30487878878101808565f https://www.encodeproject.org/files/ENCFF707CZI/@@download/ENCFF707CZI.bigBed hg19 released low read length, mild to moderate bottlenecking ENCFF949QLM bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF837FXP 7128344 ENCODE Processing Pipeline 02a8c5aa305e7707add27f9c004982e2 https://www.encodeproject.org/files/ENCFF949QLM/@@download/ENCFF949QLM.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF277EZC bigWig fold change over control ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF367ZGL, ENCFF645CCA, ENCFF943MYJ 973362296 ENCODE Processing Pipeline 23e35cf7957b539c5de9e2df678974f1 https://www.encodeproject.org/files/ENCFF277EZC/@@download/ENCFF277EZC.bigWig GRCh38 released low read length, mild to moderate bottlenecking ENCFF302CKN bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF367ZGL, ENCFF627NWR, ENCFF645CCA, ENCFF943MYJ 7089864 ENCODE Processing Pipeline fa6280fe8997e8c39b09bf61d4791b7f https://www.encodeproject.org/files/ENCFF302CKN/@@download/ENCFF302CKN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking ENCFF831LSX bigWig fold change over control ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF367ZGL, ENCFF627NWR, ENCFF645CCA, ENCFF943MYJ 1792549388 ENCODE Processing Pipeline 8fb8273ef31796644af6043a17efcec4 https://www.encodeproject.org/files/ENCFF831LSX/@@download/ENCFF831LSX.bigWig GRCh38 released low read length, mild to moderate bottlenecking ENCFF622NPD bigWig signal p-value ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF627NWR, ENCFF645CCA, ENCFF943MYJ 1386111042 ENCODE Processing Pipeline 86b9daad66469a6a213be6f6cf9033d8 https://www.encodeproject.org/files/ENCFF622NPD/@@download/ENCFF622NPD.bigWig GRCh38 released low read length, mild to moderate bottlenecking ENCFF199RUJ bigWig signal p-value ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF367ZGL, ENCFF645CCA, ENCFF943MYJ 1019564652 ENCODE Processing Pipeline 3c4bcd117ebcd002ad78d30faf2a7c41 https://www.encodeproject.org/files/ENCFF199RUJ/@@download/ENCFF199RUJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking ENCFF505CPG bigWig signal p-value ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF367ZGL, ENCFF627NWR, ENCFF645CCA, ENCFF943MYJ 1729133615 ENCODE Processing Pipeline ff8baf75ffaa14deba597d4095b22d81 https://www.encodeproject.org/files/ENCFF505CPG/@@download/ENCFF505CPG.bigWig GRCh38 released low read length, mild to moderate bottlenecking ENCFF960TCJ bigBed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF302CKN 12314208 ENCODE Processing Pipeline 78da23462e81cfabfc38a2ec95ac0330 https://www.encodeproject.org/files/ENCFF960TCJ/@@download/ENCFF960TCJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking ENCFF806NRT bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF367ZGL, ENCFF645CCA, ENCFF943MYJ 6916408 ENCODE Processing Pipeline 15758c84e392108ce84e6ef5858d38b3 https://www.encodeproject.org/files/ENCFF806NRT/@@download/ENCFF806NRT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking ENCFF408PZR bigBed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF471SQW 12701628 ENCODE Processing Pipeline 3e87f20796af58be93b28f5a42576694 https://www.encodeproject.org/files/ENCFF408PZR/@@download/ENCFF408PZR.bigBed GRCh38 released low read length, mild to moderate bottlenecking ENCFF687BKJ bigBed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF806NRT 12021450 ENCODE Processing Pipeline caaaaedb2210eaed77f92b782a50e331 https://www.encodeproject.org/files/ENCFF687BKJ/@@download/ENCFF687BKJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking ENCFF942GUJ bigBed narrowPeak conservative idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF222QWW 1277143 ENCODE Processing Pipeline 547b4452feffdcd5a3747f9539034ca4 https://www.encodeproject.org/files/ENCFF942GUJ/@@download/ENCFF942GUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking ENCFF358GET bigWig fold change over control ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF627NWR, ENCFF645CCA, ENCFF943MYJ 1494558251 ENCODE Processing Pipeline 6a523bedfeeadcee1f5abf7aa2242e79 https://www.encodeproject.org/files/ENCFF358GET/@@download/ENCFF358GET.bigWig GRCh38 released low read length, mild to moderate bottlenecking ENCFF471SQW bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF627NWR, ENCFF645CCA, ENCFF943MYJ 7129014 ENCODE Processing Pipeline b5808e444953a222d7449fac8f1cdf26 https://www.encodeproject.org/files/ENCFF471SQW/@@download/ENCFF471SQW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking ENCFF768FGG bed narrowPeak optimal idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF302CKN, ENCFF419RSJ, ENCFF471SQW, ENCFF806NRT 886138 ENCODE Processing Pipeline 9a80fc862ee8698f9d619a66b7ad1b88 https://www.encodeproject.org/files/ENCFF768FGG/@@download/ENCFF768FGG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking ENCFF365UKS bigBed narrowPeak optimal idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF768FGG 1801527 ENCODE Processing Pipeline daeaf4cf6149d3e65fb6e0c47c3ab5a0 https://www.encodeproject.org/files/ENCFF365UKS/@@download/ENCFF365UKS.bigBed GRCh38 released low read length, mild to moderate bottlenecking ENCFF222QWW bed narrowPeak conservative idr thresholded peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF302CKN, ENCFF419RSJ, ENCFF471SQW, ENCFF806NRT 583811 ENCODE Processing Pipeline 338ac0ba0f37eae8fe847bdccf1b2a37 https://www.encodeproject.org/files/ENCFF222QWW/@@download/ENCFF222QWW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking ENCFF372SMO fastq reads ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1039584272 Bradley Bernstein, Broad 5be27dfe57b359b4063272a4dc453c23 SRA:SRR5832920 https://www.encodeproject.org/files/ENCFF372SMO/@@download/ENCFF372SMO.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF360YKR fastq reads ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 4612687398 Bradley Bernstein, Broad 5c03a9629be2ede5abad7410da75a47e SRA:SRR5832921 https://www.encodeproject.org/files/ENCFF360YKR/@@download/ENCFF360YKR.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF061KAM bam unfiltered alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF372SMO, ENCFF643CGH 1223296443 ENCODE Processing Pipeline 43d69586fa95fa56413ca6d2b3a70f5f https://www.encodeproject.org/files/ENCFF061KAM/@@download/ENCFF061KAM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF453IQG bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF372SMO, ENCFF643CGH 942890973 ENCODE Processing Pipeline 5a13f30a899ca11fa4ca017d8fa8e9c1 https://www.encodeproject.org/files/ENCFF453IQG/@@download/ENCFF453IQG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF440KLL bam unfiltered alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF360YKR, ENCFF643CGH 5064885786 ENCODE Processing Pipeline c23f2a5e89d62b3989dc65548df13869 https://www.encodeproject.org/files/ENCFF440KLL/@@download/ENCFF440KLL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF262EDN bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF360YKR, ENCFF643CGH 3847281967 ENCODE Processing Pipeline b877ec85bc47904a9c8f436f00f4f23e https://www.encodeproject.org/files/ENCFF262EDN/@@download/ENCFF262EDN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF787DZZ bam unfiltered alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF372SMO, ENCFF807MUK 1220300890 ENCODE Processing Pipeline e91b42d03ea969281483c567387193d9 https://www.encodeproject.org/files/ENCFF787DZZ/@@download/ENCFF787DZZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF843XEZ bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF372SMO, ENCFF807MUK 942045270 ENCODE Processing Pipeline 744d54073dc9d0b5cfb1e3f729b87de9 https://www.encodeproject.org/files/ENCFF843XEZ/@@download/ENCFF843XEZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF507FKN bam unfiltered alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF360YKR, ENCFF807MUK 5056738712 ENCODE Processing Pipeline 9e5fcefd67dfe8f890b4831ffe9f5af7 https://www.encodeproject.org/files/ENCFF507FKN/@@download/ENCFF507FKN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF709WTC bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF360YKR, ENCFF807MUK 3836124845 ENCODE Processing Pipeline e1679f581f201ae574602bdcbff96a24 https://www.encodeproject.org/files/ENCFF709WTC/@@download/ENCFF709WTC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF190WLH bigWig signal p-value ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF262EDN, ENCFF572IKT, ENCFF714AMB 1787839028 ENCODE Processing Pipeline e0211ebb2c91b717f0beb4c0c3540273 https://www.encodeproject.org/files/ENCFF190WLH/@@download/ENCFF190WLH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF208YRL bigWig signal p-value ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF262EDN, ENCFF453IQG, ENCFF572IKT, ENCFF714AMB 1615388386 ENCODE Processing Pipeline 67d09f548bc2e639c1dc89c18d36812b https://www.encodeproject.org/files/ENCFF208YRL/@@download/ENCFF208YRL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF051XRB bigWig fold change over control ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF262EDN, ENCFF453IQG, ENCFF572IKT, ENCFF714AMB 1935617490 ENCODE Processing Pipeline 9551bc69971bde3855fac7ac1ceac05f https://www.encodeproject.org/files/ENCFF051XRB/@@download/ENCFF051XRB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF364IYF bigWig signal p-value ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF453IQG, ENCFF572IKT, ENCFF714AMB 976851480 ENCODE Processing Pipeline 0c5309c226443ccafb71dfd6bdb183a5 https://www.encodeproject.org/files/ENCFF364IYF/@@download/ENCFF364IYF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF407MPI bigWig fold change over control ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF262EDN, ENCFF572IKT, ENCFF714AMB 1791148635 ENCODE Processing Pipeline 7b53f580a708729569a5ab35d6fd6d1d https://www.encodeproject.org/files/ENCFF407MPI/@@download/ENCFF407MPI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF950NVT bigWig fold change over control ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF453IQG, ENCFF572IKT, ENCFF714AMB 841486865 ENCODE Processing Pipeline ad78aad31197af5162703dfb20454d38 https://www.encodeproject.org/files/ENCFF950NVT/@@download/ENCFF950NVT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF277QGA bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF262EDN, ENCFF453IQG, ENCFF572IKT, ENCFF714AMB 7142101 ENCODE Processing Pipeline ac8b0723c533e39a2201f241f9bec407 https://www.encodeproject.org/files/ENCFF277QGA/@@download/ENCFF277QGA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF893VUO bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF453IQG, ENCFF572IKT, ENCFF714AMB 5399743 ENCODE Processing Pipeline 07919df08df6436b51eed195de4cb362 https://www.encodeproject.org/files/ENCFF893VUO/@@download/ENCFF893VUO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF598NLE bigBed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF893VUO 11276781 ENCODE Processing Pipeline c1fef6265a835c83667e5f3581caa1b3 https://www.encodeproject.org/files/ENCFF598NLE/@@download/ENCFF598NLE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF959LXT bed narrowPeak conservative idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF215CVR, ENCFF277QGA, ENCFF419RSJ, ENCFF893VUO 91344 ENCODE Processing Pipeline 8e0b5b6a279749c8a4c7cc358e55e722 https://www.encodeproject.org/files/ENCFF959LXT/@@download/ENCFF959LXT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF316CBQ bed narrowPeak optimal idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF215CVR, ENCFF277QGA, ENCFF419RSJ, ENCFF893VUO 131715 ENCODE Processing Pipeline aee5f7f96deb0d1b937c41bb2a09a030 https://www.encodeproject.org/files/ENCFF316CBQ/@@download/ENCFF316CBQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF215CVR bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF262EDN, ENCFF572IKT, ENCFF714AMB 6925929 ENCODE Processing Pipeline a2248ac67ab5e377446118e2cbca6f1c https://www.encodeproject.org/files/ENCFF215CVR/@@download/ENCFF215CVR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF922EOT bigBed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF215CVR 13509342 ENCODE Processing Pipeline 7eb661e98e59c082c2de404fefd1d652 https://www.encodeproject.org/files/ENCFF922EOT/@@download/ENCFF922EOT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF712TMV bigBed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF277QGA 13533051 ENCODE Processing Pipeline 0a0728d20f80a80ac7f5921f21e9bc2b https://www.encodeproject.org/files/ENCFF712TMV/@@download/ENCFF712TMV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF267CUN bigBed narrowPeak conservative idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF959LXT 214388 ENCODE Processing Pipeline f758a45a20880df4c35b01acd9b0e6f5 https://www.encodeproject.org/files/ENCFF267CUN/@@download/ENCFF267CUN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF851QHV bigBed narrowPeak optimal idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF316CBQ 284099 ENCODE Processing Pipeline 401b93fa2c8b2ca5539454e4c18de20e https://www.encodeproject.org/files/ENCFF851QHV/@@download/ENCFF851QHV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF169WTL bigWig signal p-value ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 1024521155 ENCODE Processing Pipeline d73d598d96344e8e1767fc231c7f87a8 https://www.encodeproject.org/files/ENCFF169WTL/@@download/ENCFF169WTL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF009EPO bigWig fold change over control ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 841478336 ENCODE Processing Pipeline 2aaa473d2466c99872468b1123d54951 https://www.encodeproject.org/files/ENCFF009EPO/@@download/ENCFF009EPO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF808FHP bigWig signal p-value ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF709WTC, ENCFF801GGG, ENCFF881DVS 1770674868 ENCODE Processing Pipeline 83e3ff000cd8c267f6359934613bd00a https://www.encodeproject.org/files/ENCFF808FHP/@@download/ENCFF808FHP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF046EDX bigWig signal p-value ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF709WTC, ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 1810162761 ENCODE Processing Pipeline b8ed66314576cbe120f309ec203cbddc https://www.encodeproject.org/files/ENCFF046EDX/@@download/ENCFF046EDX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF856BPJ bigWig fold change over control ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF709WTC, ENCFF801GGG, ENCFF881DVS 1783068190 ENCODE Processing Pipeline 7ee66c2bc49e8e2b51dec5524eff9422 https://www.encodeproject.org/files/ENCFF856BPJ/@@download/ENCFF856BPJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF502TYR bigWig fold change over control ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF709WTC, ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 1935322188 ENCODE Processing Pipeline 5f24b2ac6f75023b09e690e58faf5aaf https://www.encodeproject.org/files/ENCFF502TYR/@@download/ENCFF502TYR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF541ESI bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 5562298 ENCODE Processing Pipeline 625c668df50ac0d775bb870c3b09ebcb https://www.encodeproject.org/files/ENCFF541ESI/@@download/ENCFF541ESI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF162RWO bigBed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF302BCZ 13560144 ENCODE Processing Pipeline a55cf36665224934a3c965c9bcadcf64 https://www.encodeproject.org/files/ENCFF162RWO/@@download/ENCFF162RWO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF592JBH bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF709WTC, ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 7160873 ENCODE Processing Pipeline d50d33aefa2e02be80f5fe7480821125 https://www.encodeproject.org/files/ENCFF592JBH/@@download/ENCFF592JBH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF302BCZ bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF709WTC, ENCFF801GGG, ENCFF881DVS 6943038 ENCODE Processing Pipeline 9d0c5e0ee1fae4d843aee4b2f5461707 https://www.encodeproject.org/files/ENCFF302BCZ/@@download/ENCFF302BCZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF727FMR bigBed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF541ESI 11268693 ENCODE Processing Pipeline 256278af8986af67f331fbf0c056b96e https://www.encodeproject.org/files/ENCFF727FMR/@@download/ENCFF727FMR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF468ACR bigBed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF592JBH 13582185 ENCODE Processing Pipeline e990f66be90ae4d5e6baea3f83a2fcca https://www.encodeproject.org/files/ENCFF468ACR/@@download/ENCFF468ACR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF422DFH bigBed narrowPeak optimal idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF044XMF 317536 ENCODE Processing Pipeline 726ae400c713f508fcc3cb31c989ea92 https://www.encodeproject.org/files/ENCFF422DFH/@@download/ENCFF422DFH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF736FGB bigBed narrowPeak conservative idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF589JZW 253102 ENCODE Processing Pipeline b25cc9384ec501551d5561b805cf3882 https://www.encodeproject.org/files/ENCFF736FGB/@@download/ENCFF736FGB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF044XMF bed narrowPeak optimal idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF302BCZ, ENCFF541ESI, ENCFF592JBH 128421 ENCODE Processing Pipeline 69dee47719bd2cc50c9e2db4012f0984 https://www.encodeproject.org/files/ENCFF044XMF/@@download/ENCFF044XMF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF589JZW bed narrowPeak conservative idr thresholded peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF302BCZ, ENCFF541ESI, ENCFF592JBH 92270 ENCODE Processing Pipeline cc8892e7d10fb0e0c50219be13cb15ce https://www.encodeproject.org/files/ENCFF589JZW/@@download/ENCFF589JZW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF456XDQ fastq reads ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF104PEG 3093220391 Michael Snyder, Stanford 1bc213b5a31af5afd8f76ccb74477794 SRA:SRR6212705 https://www.encodeproject.org/files/ENCFF456XDQ/@@download/ENCFF456XDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF104PEG fastq reads ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF456XDQ 3172344032 Michael Snyder, Stanford 0a9da4d440312af65bd198d8990f62ab SRA:SRR6212705 https://www.encodeproject.org/files/ENCFF104PEG/@@download/ENCFF104PEG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF454CBQ fastq reads ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF262SIO 3035945868 Michael Snyder, Stanford 4975b09a0b61cb34e8855008c7c65033 SRA:SRR6212704 https://www.encodeproject.org/files/ENCFF454CBQ/@@download/ENCFF454CBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF262SIO fastq reads ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF454CBQ 3112661864 Michael Snyder, Stanford 444c85df525b2e77820fe5aefc1a0cbe SRA:SRR6212704 https://www.encodeproject.org/files/ENCFF262SIO/@@download/ENCFF262SIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF067MHF bam unfiltered alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF104PEG, ENCFF456XDQ, ENCFF807MUK 6351533714 ENCODE Processing Pipeline 96308742e21ef3cd775ccfae39e9457a https://www.encodeproject.org/files/ENCFF067MHF/@@download/ENCFF067MHF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF303RHA bam unfiltered alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF262SIO, ENCFF454CBQ, ENCFF643CGH 6242631924 ENCODE Processing Pipeline 8b3c54786b313172a5ff99c9795dbec2 https://www.encodeproject.org/files/ENCFF303RHA/@@download/ENCFF303RHA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF771JAW bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF104PEG, ENCFF456XDQ, ENCFF807MUK 5296872218 ENCODE Processing Pipeline 537b9baf6660a9c85c8be10d15b7cbd6 https://www.encodeproject.org/files/ENCFF771JAW/@@download/ENCFF771JAW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF364QIX bam unfiltered alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF262SIO, ENCFF454CBQ, ENCFF807MUK 6235454288 ENCODE Processing Pipeline aa3fc4ea53dd04adbe754ff9a19ad263 https://www.encodeproject.org/files/ENCFF364QIX/@@download/ENCFF364QIX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF263DIR bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF262SIO, ENCFF454CBQ, ENCFF643CGH 5232136801 ENCODE Processing Pipeline 3b42bd8ef4b603dba5d4119308a88325 https://www.encodeproject.org/files/ENCFF263DIR/@@download/ENCFF263DIR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF332MIA bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF262SIO, ENCFF454CBQ, ENCFF807MUK 5229523311 ENCODE Processing Pipeline 685df57a290f4781d4710a9e5f4355d1 https://www.encodeproject.org/files/ENCFF332MIA/@@download/ENCFF332MIA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF850CXR bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF104PEG, ENCFF456XDQ, ENCFF643CGH 5299495577 ENCODE Processing Pipeline 1224ad36253d118c50b5ba2613c730cd https://www.encodeproject.org/files/ENCFF850CXR/@@download/ENCFF850CXR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF130YVR bam unfiltered alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF104PEG, ENCFF456XDQ, ENCFF643CGH 6358591291 ENCODE Processing Pipeline f6283eb70c2508b93ed3be1bf883bb04 https://www.encodeproject.org/files/ENCFF130YVR/@@download/ENCFF130YVR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF603XXP bigWig signal p-value ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF771JAW 1411538530 ENCODE Processing Pipeline 538e7610f5c81009ab07c0402b8e8108 https://www.encodeproject.org/files/ENCFF603XXP/@@download/ENCFF603XXP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF881VEY bigWig signal p-value ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF332MIA 1421322858 ENCODE Processing Pipeline c9b17a94250a07ba54615ec4b041ca8f https://www.encodeproject.org/files/ENCFF881VEY/@@download/ENCFF881VEY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF587TFO bigWig signal p-value ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF332MIA, ENCFF771JAW 1970326431 ENCODE Processing Pipeline d41cc96340b68ec53a862bae4725b7ee https://www.encodeproject.org/files/ENCFF587TFO/@@download/ENCFF587TFO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF605GAM bigWig fold change over control ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF771JAW 1485900779 ENCODE Processing Pipeline 8cb1d3214d6afd0f9f4497e55fdd0f04 https://www.encodeproject.org/files/ENCFF605GAM/@@download/ENCFF605GAM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF700HHJ bigWig fold change over control ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF332MIA 1436336034 ENCODE Processing Pipeline 88088a8631ffc9f3a24b14f51b5a7cf1 https://www.encodeproject.org/files/ENCFF700HHJ/@@download/ENCFF700HHJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF959WUN bigWig fold change over control ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF332MIA, ENCFF771JAW 2012141359 ENCODE Processing Pipeline d060eedcac5bebe3072b87cce0c29da9 https://www.encodeproject.org/files/ENCFF959WUN/@@download/ENCFF959WUN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF483YTG bigBed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF995FFV 13332206 ENCODE Processing Pipeline 3f94753be4bf70bf3c0facf0a78c3e53 https://www.encodeproject.org/files/ENCFF483YTG/@@download/ENCFF483YTG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF992KPA bigBed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF590SBA 13273874 ENCODE Processing Pipeline c9a12286b4c18c51f2e10b96d2b48fa7 https://www.encodeproject.org/files/ENCFF992KPA/@@download/ENCFF992KPA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF995FFV bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF771JAW 6924671 ENCODE Processing Pipeline 5865cb5a168df89914dfe809d24abda4 https://www.encodeproject.org/files/ENCFF995FFV/@@download/ENCFF995FFV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF590SBA bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF332MIA 7009184 ENCODE Processing Pipeline 7a1760ccff39c77212675d1733bd5769 https://www.encodeproject.org/files/ENCFF590SBA/@@download/ENCFF590SBA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF902KSI bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF332MIA, ENCFF771JAW 7247353 ENCODE Processing Pipeline f3555fe72fa92920b7ab980ad8ca458a https://www.encodeproject.org/files/ENCFF902KSI/@@download/ENCFF902KSI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF186CFI bigBed narrowPeak conservative idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF357ZIA 711988 ENCODE Processing Pipeline 6269388999300061800998d552a67527 https://www.encodeproject.org/files/ENCFF186CFI/@@download/ENCFF186CFI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF787IBR bigBed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF902KSI 13112188 ENCODE Processing Pipeline f2b91277a8548050c0d6377ca63ba973 https://www.encodeproject.org/files/ENCFF787IBR/@@download/ENCFF787IBR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF357ZIA bed narrowPeak conservative idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF590SBA, ENCFF902KSI, ENCFF995FFV 287871 ENCODE Processing Pipeline 8fa175b7832215ab698846b81807c458 https://www.encodeproject.org/files/ENCFF357ZIA/@@download/ENCFF357ZIA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF937UCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF675RNJ 804278 ENCODE Processing Pipeline 765af2ccb4d405c8977dac2d82b190ce https://www.encodeproject.org/files/ENCFF937UCQ/@@download/ENCFF937UCQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF675RNJ bed narrowPeak optimal idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF590SBA, ENCFF902KSI, ENCFF995FFV 335288 ENCODE Processing Pipeline c2a2e726f0bb6dc386b3eb3a2798a217 https://www.encodeproject.org/files/ENCFF675RNJ/@@download/ENCFF675RNJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF871LLA bigWig signal p-value ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF850CXR 1467193762 ENCODE Processing Pipeline 28dd06a32dad42625bfd344e95d21e42 https://www.encodeproject.org/files/ENCFF871LLA/@@download/ENCFF871LLA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF868HNA bigWig signal p-value ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF263DIR 1515985811 ENCODE Processing Pipeline 093f22d4dbcd4276c314898e91ee8bf9 https://www.encodeproject.org/files/ENCFF868HNA/@@download/ENCFF868HNA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF052UBY bigWig signal p-value ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF263DIR, ENCFF850CXR 1978187361 ENCODE Processing Pipeline 60156ea72d473f058ca1de67f1117e29 https://www.encodeproject.org/files/ENCFF052UBY/@@download/ENCFF052UBY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF203SKP bigWig fold change over control ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF850CXR 1444032370 ENCODE Processing Pipeline c5dd540b0d07d49fcafecec770445e1a https://www.encodeproject.org/files/ENCFF203SKP/@@download/ENCFF203SKP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF562NQM bigWig fold change over control ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF263DIR 1433652329 ENCODE Processing Pipeline fed6be2d2e71ed0a6e8b6a1d741eed39 https://www.encodeproject.org/files/ENCFF562NQM/@@download/ENCFF562NQM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF856ZVM bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF263DIR, ENCFF850CXR 7239891 ENCODE Processing Pipeline f454fef76485641c90c5a4eea45e56a4 https://www.encodeproject.org/files/ENCFF856ZVM/@@download/ENCFF856ZVM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF553XZX bigBed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF856ZVM 13117586 ENCODE Processing Pipeline 43513dcd8cc3d7b80781ad3b0ad891f1 https://www.encodeproject.org/files/ENCFF553XZX/@@download/ENCFF553XZX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF855RLL bigBed narrowPeak conservative idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF654AER 704414 ENCODE Processing Pipeline ca474a0f4ef9f2775671deef1bfa211b https://www.encodeproject.org/files/ENCFF855RLL/@@download/ENCFF855RLL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF511BOQ bed narrowPeak optimal idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF852UUF, ENCFF856ZVM, ENCFF917JMO 335340 ENCODE Processing Pipeline a83a367443b0c377e8f3211d382d0841 https://www.encodeproject.org/files/ENCFF511BOQ/@@download/ENCFF511BOQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF980QWS bigBed narrowPeak optimal idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF511BOQ 807970 ENCODE Processing Pipeline 535c2d041c0f472f55fe96d665fdc4a7 https://www.encodeproject.org/files/ENCFF980QWS/@@download/ENCFF980QWS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF620XUA bigBed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF852UUF 13346998 ENCODE Processing Pipeline 9c94bd31d8fe42121552acebb5797cb2 https://www.encodeproject.org/files/ENCFF620XUA/@@download/ENCFF620XUA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF499IPM bigBed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF917JMO 13283891 ENCODE Processing Pipeline 3c702dd443d43416d68a2f325a43a41f https://www.encodeproject.org/files/ENCFF499IPM/@@download/ENCFF499IPM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF432HNP bigWig fold change over control ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF263DIR, ENCFF850CXR 2021623649 ENCODE Processing Pipeline 376ab9ea70d5587cdd0a197adc4aaa11 https://www.encodeproject.org/files/ENCFF432HNP/@@download/ENCFF432HNP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF852UUF bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF850CXR 6896114 ENCODE Processing Pipeline e97fb5fa679199c9ee4f99fe14b98ce7 https://www.encodeproject.org/files/ENCFF852UUF/@@download/ENCFF852UUF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF917JMO bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF263DIR 7008831 ENCODE Processing Pipeline a8ee43c372a10a309822e3a31410024b https://www.encodeproject.org/files/ENCFF917JMO/@@download/ENCFF917JMO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF654AER bed narrowPeak conservative idr thresholded peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF852UUF, ENCFF856ZVM, ENCFF917JMO 282794 ENCODE Processing Pipeline 0489e0b89d1c016dc07c9bd2578f4526 https://www.encodeproject.org/files/ENCFF654AER/@@download/ENCFF654AER.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF732PVD fastq reads ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF098JPF 3076482005 Michael Snyder, Stanford f79bcc352b32a7f37e773c1b2ad36d31 https://www.encodeproject.org/files/ENCFF732PVD/@@download/ENCFF732PVD.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released experiment not submitted to GEO partially characterized antibody ENCFF098JPF fastq reads ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF732PVD 3119051513 Michael Snyder, Stanford 68bb19ab8209269824a6327c452db8af https://www.encodeproject.org/files/ENCFF098JPF/@@download/ENCFF098JPF.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released experiment not submitted to GEO partially characterized antibody ENCFF025YQV fastq reads ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF572GPA 2729049456 Michael Snyder, Stanford 14e3a270835c8e7d7c29e1fa621d54a4 https://www.encodeproject.org/files/ENCFF025YQV/@@download/ENCFF025YQV.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released experiment not submitted to GEO partially characterized antibody ENCFF572GPA fastq reads ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF025YQV 2767115615 Michael Snyder, Stanford 1a909ffac95f225d26058ff8404e651e https://www.encodeproject.org/files/ENCFF572GPA/@@download/ENCFF572GPA.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released experiment not submitted to GEO partially characterized antibody ENCFF400HJN bam unfiltered alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 100 ENCFF025YQV, ENCFF572GPA, ENCFF643CGH 6032671160 ENCODE Processing Pipeline f3e763923eebc486f5c81997e2fdc71d https://www.encodeproject.org/files/ENCFF400HJN/@@download/ENCFF400HJN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF666KMW bam unfiltered alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 100 ENCFF098JPF, ENCFF643CGH, ENCFF732PVD 6752818288 ENCODE Processing Pipeline 1a74485f7a037348dcc41a903bb605e2 https://www.encodeproject.org/files/ENCFF666KMW/@@download/ENCFF666KMW.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF315RBN bam unfiltered alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 100 ENCFF098JPF, ENCFF732PVD, ENCFF807MUK 6746549374 ENCODE Processing Pipeline 43cecc668f1b2ae6397cdb53cc5f161f https://www.encodeproject.org/files/ENCFF315RBN/@@download/ENCFF315RBN.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF252FSL bam unfiltered alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 100 ENCFF025YQV, ENCFF572GPA, ENCFF807MUK 6027277559 ENCODE Processing Pipeline 725d14587d926333a9fbe7d832c765b7 https://www.encodeproject.org/files/ENCFF252FSL/@@download/ENCFF252FSL.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF102RWP bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 100 ENCFF025YQV, ENCFF572GPA, ENCFF807MUK 4450232867 ENCODE Processing Pipeline b3fdf126b153ac65a4488b4af6d015cb https://www.encodeproject.org/files/ENCFF102RWP/@@download/ENCFF102RWP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF379VLE bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 100 ENCFF025YQV, ENCFF572GPA, ENCFF643CGH 4452991753 ENCODE Processing Pipeline 0d1b10702f592f130e1b64e0ca50f67c https://www.encodeproject.org/files/ENCFF379VLE/@@download/ENCFF379VLE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF758OOR bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 100 ENCFF098JPF, ENCFF732PVD, ENCFF807MUK 5041061584 ENCODE Processing Pipeline a075fad4e871ff4f4666a0747c180dc4 https://www.encodeproject.org/files/ENCFF758OOR/@@download/ENCFF758OOR.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF702BVO bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 100 ENCFF098JPF, ENCFF643CGH, ENCFF732PVD 5044485832 ENCODE Processing Pipeline a14292cd3ffdfeef1078598942dd65a2 https://www.encodeproject.org/files/ENCFF702BVO/@@download/ENCFF702BVO.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF645UPN bigWig fold change over control ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 1881674002 ENCODE Processing Pipeline 5f0b35c42de70a87989423be79645740 https://www.encodeproject.org/files/ENCFF645UPN/@@download/ENCFF645UPN.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF517GZV bed narrowPeak conservative idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF349MUN, ENCFF466JSP, ENCFF629MDH 44086 ENCODE Processing Pipeline 586c7f0722ff930195e18055d12a6b13 https://www.encodeproject.org/files/ENCFF517GZV/@@download/ENCFF517GZV.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF569VAK bigWig signal p-value ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV 1241825382 ENCODE Processing Pipeline dd548056acc6dcbcc658540c7c11c536 https://www.encodeproject.org/files/ENCFF569VAK/@@download/ENCFF569VAK.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF109UDY bigWig fold change over control ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV 1297252135 ENCODE Processing Pipeline 9843214880d80a584fe2c7b17b42c067 https://www.encodeproject.org/files/ENCFF109UDY/@@download/ENCFF109UDY.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF589AQZ bigWig signal p-value ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 1176087961 ENCODE Processing Pipeline 2aa0bfcb6825b83a744ae3e2eb19e5f9 https://www.encodeproject.org/files/ENCFF589AQZ/@@download/ENCFF589AQZ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF629MDH bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 6426362 ENCODE Processing Pipeline cfa47a78182eda62eb4386595cf76634 https://www.encodeproject.org/files/ENCFF629MDH/@@download/ENCFF629MDH.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF798LSA bigBed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF349MUN 11142522 ENCODE Processing Pipeline bc59c705fe1e64cdda8a48439dbbcf23 https://www.encodeproject.org/files/ENCFF798LSA/@@download/ENCFF798LSA.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF349MUN bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 7144928 ENCODE Processing Pipeline a321c4dd077ae6c5eae5228f41e848b9 https://www.encodeproject.org/files/ENCFF349MUN/@@download/ENCFF349MUN.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF612JIY bigBed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF629MDH 11237512 ENCODE Processing Pipeline 179b7a0878e123f5f08a25dcec8d81f8 https://www.encodeproject.org/files/ENCFF612JIY/@@download/ENCFF612JIY.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF462ZTE bigBed narrowPeak conservative idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF517GZV 144845 ENCODE Processing Pipeline 94e213f2cc391d8a2351079316d19658 https://www.encodeproject.org/files/ENCFF462ZTE/@@download/ENCFF462ZTE.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF148EJR bigWig fold change over control ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 1384470609 ENCODE Processing Pipeline 0f5743a1e2514d9d5c634a4663d96e51 https://www.encodeproject.org/files/ENCFF148EJR/@@download/ENCFF148EJR.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF693TNF bigBed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF466JSP 11245012 ENCODE Processing Pipeline 875edad0c5683f6410b0cb9230d5cb3a https://www.encodeproject.org/files/ENCFF693TNF/@@download/ENCFF693TNF.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF331TEL bigWig signal p-value ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 1369448149 ENCODE Processing Pipeline a32a46e2a517f406fd7d5810396dad01 https://www.encodeproject.org/files/ENCFF331TEL/@@download/ENCFF331TEL.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF466JSP bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV 6434268 ENCODE Processing Pipeline 23f55f2073dafeb259497b0593e8c0ec https://www.encodeproject.org/files/ENCFF466JSP/@@download/ENCFF466JSP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF289BUU bed narrowPeak optimal idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF349MUN, ENCFF466JSP, ENCFF629MDH 69389 ENCODE Processing Pipeline 3cac01fc9589a4464ae550b9ca599261 https://www.encodeproject.org/files/ENCFF289BUU/@@download/ENCFF289BUU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF261PLN bigBed narrowPeak optimal idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF289BUU 186974 ENCODE Processing Pipeline 22d15f26c16bce6bb5dfd5c313bc3cba https://www.encodeproject.org/files/ENCFF261PLN/@@download/ENCFF261PLN.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF953IKY bigWig fold change over control ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF379VLE, ENCFF720AUK, ENCFF796JTX 1289790911 ENCODE Processing Pipeline bfb2aa16925e3591d6a768b441be7f78 https://www.encodeproject.org/files/ENCFF953IKY/@@download/ENCFF953IKY.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF949FTC bigWig fold change over control ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF379VLE, ENCFF702BVO, ENCFF720AUK, ENCFF796JTX 1884751585 ENCODE Processing Pipeline 8c156eb8a5d614cdf9ee937139910963 https://www.encodeproject.org/files/ENCFF949FTC/@@download/ENCFF949FTC.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF927FWG bigWig signal p-value ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF379VLE, ENCFF702BVO, ENCFF720AUK, ENCFF796JTX 1637929510 ENCODE Processing Pipeline 886b10a38c0eda8db81ed2eb01c2dd6a https://www.encodeproject.org/files/ENCFF927FWG/@@download/ENCFF927FWG.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF534PWX bigBed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF790CZA 11258417 ENCODE Processing Pipeline 610373d303afb4d61102170c40444305 https://www.encodeproject.org/files/ENCFF534PWX/@@download/ENCFF534PWX.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF909TDT bed narrowPeak conservative idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF790CZA, ENCFF895XVM, ENCFF994UGA 45706 ENCODE Processing Pipeline fbe7fec1e33676d45a7a693a7ba4c58d https://www.encodeproject.org/files/ENCFF909TDT/@@download/ENCFF909TDT.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF877OMQ bigWig signal p-value ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF702BVO, ENCFF720AUK, ENCFF796JTX 1425751999 ENCODE Processing Pipeline c6b5c0c5d8624d95ee824600292824a0 https://www.encodeproject.org/files/ENCFF877OMQ/@@download/ENCFF877OMQ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF885JMZ bed narrowPeak optimal idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF790CZA, ENCFF895XVM, ENCFF994UGA 68881 ENCODE Processing Pipeline fb7d9eb59e98bcd1f916e31fabfb3306 https://www.encodeproject.org/files/ENCFF885JMZ/@@download/ENCFF885JMZ.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF531YTT bigWig signal p-value ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF379VLE, ENCFF720AUK, ENCFF796JTX 1212107292 ENCODE Processing Pipeline 29f8f2430f45ff827025bfa6d7c14544 https://www.encodeproject.org/files/ENCFF531YTT/@@download/ENCFF531YTT.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF716BTN bigWig fold change over control ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF702BVO, ENCFF720AUK, ENCFF796JTX 1377960099 ENCODE Processing Pipeline c7a1ec2dc1de9757e51d0a3675de5b19 https://www.encodeproject.org/files/ENCFF716BTN/@@download/ENCFF716BTN.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF790CZA bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF702BVO, ENCFF720AUK, ENCFF796JTX 6433102 ENCODE Processing Pipeline e452ffd1407940d3b0c1b722e3ce417e https://www.encodeproject.org/files/ENCFF790CZA/@@download/ENCFF790CZA.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF994UGA bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF379VLE, ENCFF702BVO, ENCFF720AUK, ENCFF796JTX 7153495 ENCODE Processing Pipeline 6a787d4501afae50b3db52e59a2de51b https://www.encodeproject.org/files/ENCFF994UGA/@@download/ENCFF994UGA.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF986OZX bigBed narrowPeak optimal idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF885JMZ 188519 ENCODE Processing Pipeline 65b19e3d6e249712b79b38497380afbf https://www.encodeproject.org/files/ENCFF986OZX/@@download/ENCFF986OZX.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF895XVM bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF379VLE, ENCFF720AUK, ENCFF796JTX 6438428 ENCODE Processing Pipeline 051a846fcb3b28f7dc66ef4f383d6f22 https://www.encodeproject.org/files/ENCFF895XVM/@@download/ENCFF895XVM.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF140QWR bigBed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF895XVM 11263504 ENCODE Processing Pipeline 04e424e7d1bf75fa45ef1bae74a715fb https://www.encodeproject.org/files/ENCFF140QWR/@@download/ENCFF140QWR.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF062XBC bigBed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF994UGA 11159944 ENCODE Processing Pipeline ddeaec18dc697755092634afe3f88296 https://www.encodeproject.org/files/ENCFF062XBC/@@download/ENCFF062XBC.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF580LOU bigBed narrowPeak conservative idr thresholded peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1, 2 ENCFF909TDT 149231 ENCODE Processing Pipeline ffcb00180e8a325a163cfd92e5b07aee https://www.encodeproject.org/files/ENCFF580LOU/@@download/ENCFF580LOU.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF355NCB bam unfiltered alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF006QJD, ENCFF765LUQ, ENCFF807MUK 1475815677 ENCODE Processing Pipeline e2d446aa527e00bd9d3f000bfe0f1134 https://www.encodeproject.org/files/ENCFF355NCB/@@download/ENCFF355NCB.bam hg19 released missing genetic modification characterization ENCFF804YPG bam unfiltered alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF277ODW, ENCFF542BMY, ENCFF807MUK 1529165387 ENCODE Processing Pipeline 0e2e4fe994d9cd1cfe2133023a7a3ba8 https://www.encodeproject.org/files/ENCFF804YPG/@@download/ENCFF804YPG.bam hg19 released missing genetic modification characterization ENCFF006QJD fastq reads ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 626496393 Kevin White, UChicago 29695b17e525724b6fa50dac2732c89a SRA:SRR6212997 https://www.encodeproject.org/files/ENCFF006QJD/@@download/ENCFF006QJD.fastq.gz Illumina HiSeq 2000 /files/ENCFF406VEB/, /files/ENCFF860ICW/ released missing genetic modification characterization ENCFF542BMY fastq reads ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 690151465 Kevin White, UChicago 0dfa418c2ff5fcece57e4017a8eaa014 SRA:SRR6212995 https://www.encodeproject.org/files/ENCFF542BMY/@@download/ENCFF542BMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF406VEB/, /files/ENCFF860ICW/ released missing genetic modification characterization ENCFF765LUQ fastq reads ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 714738719 Kevin White, UChicago b616819af4b8fc8c4de9deb7ad4093ed SRA:SRR6212998 https://www.encodeproject.org/files/ENCFF765LUQ/@@download/ENCFF765LUQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF406VEB/, /files/ENCFF860ICW/ released missing genetic modification characterization ENCFF277ODW fastq reads ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 687936841 Kevin White, UChicago 99fcd53bb9c83f0e1bf546fd1765096b SRA:SRR6212996 https://www.encodeproject.org/files/ENCFF277ODW/@@download/ENCFF277ODW.fastq.gz Illumina HiSeq 2500 /files/ENCFF406VEB/, /files/ENCFF860ICW/ released missing genetic modification characterization ENCFF965ZXK bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF277ODW, ENCFF542BMY, ENCFF807MUK 1164273204 ENCODE Processing Pipeline 2d16b607a01377763cbfc10e610d2724 https://www.encodeproject.org/files/ENCFF965ZXK/@@download/ENCFF965ZXK.bam hg19 released missing genetic modification characterization ENCFF772MDW bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF006QJD, ENCFF765LUQ, ENCFF807MUK 1108593667 ENCODE Processing Pipeline e3221e11e300b67e9d28a807f3bfd762 https://www.encodeproject.org/files/ENCFF772MDW/@@download/ENCFF772MDW.bam hg19 released missing genetic modification characterization ENCFF358OTV bigWig signal p-value ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF772MDW, ENCFF987QVP 487849459 ENCODE Processing Pipeline 3e55a727c62a793ae047d28dc70f4413 https://www.encodeproject.org/files/ENCFF358OTV/@@download/ENCFF358OTV.bigWig hg19 released missing genetic modification characterization ENCFF856AFX bigWig signal p-value ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF965ZXK, ENCFF987QVP 534965906 ENCODE Processing Pipeline 6c46cf1b70e0ec673befa6ac5a83b3e3 https://www.encodeproject.org/files/ENCFF856AFX/@@download/ENCFF856AFX.bigWig hg19 released missing genetic modification characterization ENCFF161PFH bigWig fold change over control ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF772MDW, ENCFF987QVP 622450096 ENCODE Processing Pipeline 097a60e20b04020f92ae2f5ee16e769a https://www.encodeproject.org/files/ENCFF161PFH/@@download/ENCFF161PFH.bigWig hg19 released missing genetic modification characterization ENCFF931DRI bigWig signal p-value ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF772MDW, ENCFF965ZXK, ENCFF987QVP 722026898 ENCODE Processing Pipeline 3eed04e23328af7b0cb553168e7d1e28 https://www.encodeproject.org/files/ENCFF931DRI/@@download/ENCFF931DRI.bigWig hg19 released missing genetic modification characterization ENCFF207GXZ bigWig fold change over control ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF965ZXK, ENCFF987QVP 648213433 ENCODE Processing Pipeline 3999ce3ffcda7d2bfd549a16ce6e1fa7 https://www.encodeproject.org/files/ENCFF207GXZ/@@download/ENCFF207GXZ.bigWig hg19 released missing genetic modification characterization ENCFF245TUO bigWig fold change over control ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF772MDW, ENCFF965ZXK, ENCFF987QVP 921192106 ENCODE Processing Pipeline 7214ae1387f1e51bf18f3e8ba7760bda https://www.encodeproject.org/files/ENCFF245TUO/@@download/ENCFF245TUO.bigWig hg19 released missing genetic modification characterization ENCFF070OJG bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF772MDW, ENCFF965ZXK, ENCFF987QVP 7110829 ENCODE Processing Pipeline 1f1e5ee110dcf390a9ea9345875fad0f https://www.encodeproject.org/files/ENCFF070OJG/@@download/ENCFF070OJG.bed.gz hg19 released missing genetic modification characterization ENCFF751FQC bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF772MDW, ENCFF987QVP 6396051 ENCODE Processing Pipeline 2eff0636ee4eb232d4bbd74b854293d8 https://www.encodeproject.org/files/ENCFF751FQC/@@download/ENCFF751FQC.bed.gz hg19 released missing genetic modification characterization ENCFF897LGZ bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF965ZXK, ENCFF987QVP 6723087 ENCODE Processing Pipeline 99bbd0406c6f9e96efc38078d2cd7f38 https://www.encodeproject.org/files/ENCFF897LGZ/@@download/ENCFF897LGZ.bed.gz hg19 released missing genetic modification characterization ENCFF766XZG bigBed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF070OJG 12945413 ENCODE Processing Pipeline 4c9916664ffa0b8978e58b41a380628b https://www.encodeproject.org/files/ENCFF766XZG/@@download/ENCFF766XZG.bigBed hg19 released missing genetic modification characterization ENCFF600NMQ bigBed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF751FQC 13127269 ENCODE Processing Pipeline 98d2ae7a408ebc2c16b30cd1bb2d463e https://www.encodeproject.org/files/ENCFF600NMQ/@@download/ENCFF600NMQ.bigBed hg19 released missing genetic modification characterization ENCFF017FLM bigBed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF897LGZ 13017659 ENCODE Processing Pipeline 61e58b714fbf0b61448abd5ba1ac253b https://www.encodeproject.org/files/ENCFF017FLM/@@download/ENCFF017FLM.bigBed hg19 released missing genetic modification characterization ENCFF826HDR bam unfiltered alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF277ODW, ENCFF542BMY, ENCFF643CGH 1536897917 ENCODE Processing Pipeline 84ce91ce69120988e48525c1bdfb844c https://www.encodeproject.org/files/ENCFF826HDR/@@download/ENCFF826HDR.bam GRCh38 released missing genetic modification characterization ENCFF315WME bam unfiltered alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF006QJD, ENCFF643CGH, ENCFF765LUQ 1482941830 ENCODE Processing Pipeline d3f7e9e68fb93dffa0afeb410ecbd6b4 https://www.encodeproject.org/files/ENCFF315WME/@@download/ENCFF315WME.bam GRCh38 released missing genetic modification characterization ENCFF043GOQ bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF006QJD, ENCFF643CGH, ENCFF765LUQ 1108177633 ENCODE Processing Pipeline bb27367796e668f0708528c5f5902dff https://www.encodeproject.org/files/ENCFF043GOQ/@@download/ENCFF043GOQ.bam GRCh38 released missing genetic modification characterization ENCFF790XOB bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF277ODW, ENCFF542BMY, ENCFF643CGH 1163845119 ENCODE Processing Pipeline b0b1b86f198ed7e6057df3134cc71a89 https://www.encodeproject.org/files/ENCFF790XOB/@@download/ENCFF790XOB.bam GRCh38 released missing genetic modification characterization ENCFF977RYR bigWig signal p-value ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF422LHK, ENCFF790XOB 648193171 ENCODE Processing Pipeline c96516b977cfb236b2f681b6010144df https://www.encodeproject.org/files/ENCFF977RYR/@@download/ENCFF977RYR.bigWig GRCh38 released missing genetic modification characterization ENCFF585UZM bigWig fold change over control ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF043GOQ, ENCFF422LHK 634563263 ENCODE Processing Pipeline 8d653a3152815ed643e3d830be34a448 https://www.encodeproject.org/files/ENCFF585UZM/@@download/ENCFF585UZM.bigWig GRCh38 released missing genetic modification characterization ENCFF106DOS bigWig signal p-value ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF043GOQ, ENCFF422LHK 636866165 ENCODE Processing Pipeline 98f0cd62cc2f4c6bf12cf759084954b9 https://www.encodeproject.org/files/ENCFF106DOS/@@download/ENCFF106DOS.bigWig GRCh38 released missing genetic modification characterization ENCFF875BGS bigWig signal p-value ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF043GOQ, ENCFF422LHK, ENCFF790XOB 727945015 ENCODE Processing Pipeline 0d25e26eb7dff2b7edda7bc8ae012e74 https://www.encodeproject.org/files/ENCFF875BGS/@@download/ENCFF875BGS.bigWig GRCh38 released missing genetic modification characterization ENCFF937LUU bigWig fold change over control ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF422LHK, ENCFF790XOB 643692249 ENCODE Processing Pipeline 6fb628817d4433f5b6de5eeca5b7e46c https://www.encodeproject.org/files/ENCFF937LUU/@@download/ENCFF937LUU.bigWig GRCh38 released missing genetic modification characterization ENCFF441YSV bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF422LHK, ENCFF790XOB 6493746 ENCODE Processing Pipeline b5d9cb5ee903214d2529be25ff7057ee https://www.encodeproject.org/files/ENCFF441YSV/@@download/ENCFF441YSV.bed.gz GRCh38 released missing genetic modification characterization ENCFF306WEW bigWig fold change over control ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF043GOQ, ENCFF422LHK, ENCFF790XOB 931043287 ENCODE Processing Pipeline 29dab7377a2e188fd4ade299d4b21f3e https://www.encodeproject.org/files/ENCFF306WEW/@@download/ENCFF306WEW.bigWig GRCh38 released missing genetic modification characterization ENCFF205SQN bigBed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF441YSV 13030332 ENCODE Processing Pipeline 5d180dc17db23e724bfaa718a26e5cfb https://www.encodeproject.org/files/ENCFF205SQN/@@download/ENCFF205SQN.bigBed GRCh38 released missing genetic modification characterization ENCFF642JAM bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF043GOQ, ENCFF422LHK 6284344 ENCODE Processing Pipeline b4fef4802e4ebac2c1e04f081af7bbe7 https://www.encodeproject.org/files/ENCFF642JAM/@@download/ENCFF642JAM.bed.gz GRCh38 released missing genetic modification characterization ENCFF287QDZ bed narrowPeak conservative idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF441YSV, ENCFF642JAM, ENCFF974WCC 169942 ENCODE Processing Pipeline 81d35066251f87d39377818cef7a497b https://www.encodeproject.org/files/ENCFF287QDZ/@@download/ENCFF287QDZ.bed.gz GRCh38 released missing genetic modification characterization ENCFF956NPN bigBed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF642JAM 13128618 ENCODE Processing Pipeline 1864f1768d981fdc046c5a40bca550bf https://www.encodeproject.org/files/ENCFF956NPN/@@download/ENCFF956NPN.bigBed GRCh38 released missing genetic modification characterization ENCFF974WCC bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF043GOQ, ENCFF422LHK, ENCFF790XOB 6961014 ENCODE Processing Pipeline a705e9c8da0e8ce561a91782a6d92969 https://www.encodeproject.org/files/ENCFF974WCC/@@download/ENCFF974WCC.bed.gz GRCh38 released missing genetic modification characterization ENCFF801NRS bigBed narrowPeak conservative idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF287QDZ 383993 ENCODE Processing Pipeline 992a170a17a09ad1756d5c199b2869fe https://www.encodeproject.org/files/ENCFF801NRS/@@download/ENCFF801NRS.bigBed GRCh38 released missing genetic modification characterization ENCFF461CLM bed narrowPeak optimal idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF441YSV, ENCFF642JAM, ENCFF974WCC 176223 ENCODE Processing Pipeline 101431ba6e24a8f9c49596f45a5b9392 https://www.encodeproject.org/files/ENCFF461CLM/@@download/ENCFF461CLM.bed.gz GRCh38 released missing genetic modification characterization ENCFF816HXT bigBed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF974WCC 12961129 ENCODE Processing Pipeline 353c80b5204354bec0fe5782d418b241 https://www.encodeproject.org/files/ENCFF816HXT/@@download/ENCFF816HXT.bigBed GRCh38 released missing genetic modification characterization ENCFF775HCL bigBed narrowPeak optimal idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF461CLM 394326 ENCODE Processing Pipeline 69c33c9a055c7a85f9b0c66e0839b761 https://www.encodeproject.org/files/ENCFF775HCL/@@download/ENCFF775HCL.bigBed GRCh38 released missing genetic modification characterization ENCFF792BDD bed narrowPeak conservative idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF070OJG, ENCFF751FQC, ENCFF897LGZ 142550 ENCODE Processing Pipeline a2c89f413224d41b1b371dc04303c79b https://www.encodeproject.org/files/ENCFF792BDD/@@download/ENCFF792BDD.bed.gz hg19 released missing genetic modification characterization ENCFF417DAH bigBed narrowPeak conservative idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF792BDD 282221 ENCODE Processing Pipeline f1c7b4286d9f16265825c6f7a9ebb24b https://www.encodeproject.org/files/ENCFF417DAH/@@download/ENCFF417DAH.bigBed hg19 released missing genetic modification characterization ENCFF463ZWH bed narrowPeak optimal idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF070OJG, ENCFF751FQC, ENCFF897LGZ 146809 ENCODE Processing Pipeline c6199365c3ba00a74b337eedaff244ce https://www.encodeproject.org/files/ENCFF463ZWH/@@download/ENCFF463ZWH.bed.gz hg19 released missing genetic modification characterization ENCFF435SSM bigBed narrowPeak optimal idr thresholded peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF463ZWH 288504 ENCODE Processing Pipeline d4c7a96b32dd6722a80566bb0d64782f https://www.encodeproject.org/files/ENCFF435SSM/@@download/ENCFF435SSM.bigBed hg19 released missing genetic modification characterization ENCFF074BZR fastq reads ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 2 76 paired-ended 1 ENCFF832NVU 1901914620 Bradley Bernstein, Broad 17cd81d20f15ce7de411e1e4f5fd917f https://www.encodeproject.org/files/ENCFF074BZR/@@download/ENCFF074BZR.fastq.gz Illumina HiSeq 2500 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by, unreplicated experiment ENCFF832NVU fastq reads ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 2 76 paired-ended 2 ENCFF074BZR 1939618581 Bradley Bernstein, Broad b21c85dc74e83bb192de13b872b9d305 https://www.encodeproject.org/files/ENCFF832NVU/@@download/ENCFF832NVU.fastq.gz Illumina HiSeq 2500 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by, unreplicated experiment ENCFF177FJZ fastq reads ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 paired-ended 1 ENCFF988YXY 1947014257 Bradley Bernstein, Broad 97031c50c92be4ffa8d44c8064f2d6b2 https://www.encodeproject.org/files/ENCFF177FJZ/@@download/ENCFF177FJZ.fastq.gz Illumina HiSeq 2500 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by, unreplicated experiment ENCFF988YXY fastq reads ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 paired-ended 2 ENCFF177FJZ 1991530956 Bradley Bernstein, Broad 0e411d03c21a3c569ed5765090f54000 https://www.encodeproject.org/files/ENCFF988YXY/@@download/ENCFF988YXY.fastq.gz Illumina HiSeq 2500 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by, unreplicated experiment ENCFF660YKL bam unfiltered alignments ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF074BZR, ENCFF177FJZ, ENCFF643CGH, ENCFF832NVU, ENCFF988YXY 9057979967 ENCODE Processing Pipeline 3c88d507423286550c1f1a9eeae358d8 https://www.encodeproject.org/files/ENCFF660YKL/@@download/ENCFF660YKL.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF627BPU bam alignments ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF074BZR, ENCFF177FJZ, ENCFF643CGH, ENCFF832NVU, ENCFF988YXY 7740865124 ENCODE Processing Pipeline 0eb428e482d99122e80fd35239e9afba https://www.encodeproject.org/files/ENCFF627BPU/@@download/ENCFF627BPU.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF338XLV bam alignments ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF074BZR, ENCFF177FJZ, ENCFF807MUK, ENCFF832NVU, ENCFF988YXY 7745373823 ENCODE Processing Pipeline 961f5e0ac47efbd6da6eeb3ee79ae924 https://www.encodeproject.org/files/ENCFF338XLV/@@download/ENCFF338XLV.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF142FQX bam unfiltered alignments ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF074BZR, ENCFF177FJZ, ENCFF807MUK, ENCFF832NVU, ENCFF988YXY 9044732387 ENCODE Processing Pipeline 74afe591464ebffdc45f427a4db53a04 https://www.encodeproject.org/files/ENCFF142FQX/@@download/ENCFF142FQX.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF120OIF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF213BEP 294204 ENCODE Processing Pipeline 108f5dd46574071e5edceed87424aece https://www.encodeproject.org/files/ENCFF120OIF/@@download/ENCFF120OIF.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF730GZV bigWig fold change over control ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269ZDG, ENCFF338XLV 2033820642 ENCODE Processing Pipeline adc1ca0c909446001d0d8ec0cd74617f https://www.encodeproject.org/files/ENCFF730GZV/@@download/ENCFF730GZV.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF589OJB bed narrowPeak peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269ZDG, ENCFF338XLV 7117810 ENCODE Processing Pipeline e6ab79b079eb97147209daee8a2e759b https://www.encodeproject.org/files/ENCFF589OJB/@@download/ENCFF589OJB.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF263TAU bigWig signal p-value ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF627BPU, ENCFF754UFV 1964397198 ENCODE Processing Pipeline d448e7ea1a11d00de25dd18c7fedad5f https://www.encodeproject.org/files/ENCFF263TAU/@@download/ENCFF263TAU.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF465IEE bigBed narrowPeak peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF589OJB 12600561 ENCODE Processing Pipeline 3784c5821f1bdda7ee3a0bbde7255633 https://www.encodeproject.org/files/ENCFF465IEE/@@download/ENCFF465IEE.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF056XOY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF001TDO, ENCFF589OJB 87777 ENCODE Processing Pipeline e48fae10e6222d05ae02b1b9ea4ebb16 https://www.encodeproject.org/files/ENCFF056XOY/@@download/ENCFF056XOY.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF282CRI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF056XOY 283350 ENCODE Processing Pipeline 67ec724abc7099b6dfdd1a2cab143cd1 https://www.encodeproject.org/files/ENCFF282CRI/@@download/ENCFF282CRI.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF117WAO bigWig fold change over control ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF627BPU, ENCFF754UFV 2018878238 ENCODE Processing Pipeline 27a51ad6871b0f2ab93dab3658496fc4 https://www.encodeproject.org/files/ENCFF117WAO/@@download/ENCFF117WAO.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF336YDW bed narrowPeak peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF627BPU, ENCFF754UFV 7118759 ENCODE Processing Pipeline d6fb6fa21b1159ab1f31a176e737c17e https://www.encodeproject.org/files/ENCFF336YDW/@@download/ENCFF336YDW.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF271LXJ bigWig signal p-value ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269ZDG, ENCFF338XLV 1989881058 ENCODE Processing Pipeline 9eaadd78fd7ceb1ec07336eab1a49a44 https://www.encodeproject.org/files/ENCFF271LXJ/@@download/ENCFF271LXJ.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF766SMD bigBed narrowPeak peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF336YDW 12609458 ENCODE Processing Pipeline e9cb6be4e481c020a1081f2a64c02a30 https://www.encodeproject.org/files/ENCFF766SMD/@@download/ENCFF766SMD.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF213BEP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF336YDW, ENCFF419RSJ 90988 ENCODE Processing Pipeline 836d0793431ff4109db831cee6a6692e https://www.encodeproject.org/files/ENCFF213BEP/@@download/ENCFF213BEP.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF620OZQ fastq reads ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF889HHE 3059270139 Michael Snyder, Stanford 8929a915b4ea67dfd400ec9e7a7fd622 SRA:SRR6214370 https://www.encodeproject.org/files/ENCFF620OZQ/@@download/ENCFF620OZQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF889HHE fastq reads ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF620OZQ 3112936272 Michael Snyder, Stanford 22ecea74bb1df8f76d5b68ff8492ce16 SRA:SRR6214370 https://www.encodeproject.org/files/ENCFF889HHE/@@download/ENCFF889HHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF365YXG fastq reads ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF392CXN 2469309624 Michael Snyder, Stanford 5327bf57879f27cc31621f24164b9438 SRA:SRR6214369 https://www.encodeproject.org/files/ENCFF365YXG/@@download/ENCFF365YXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF392CXN fastq reads ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF365YXG 2506347220 Michael Snyder, Stanford 330d5adba424b06915882f872f127a6d SRA:SRR6214369 https://www.encodeproject.org/files/ENCFF392CXN/@@download/ENCFF392CXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF843NNY bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF365YXG, ENCFF392CXN, ENCFF807MUK 4400774182 ENCODE Processing Pipeline cc957bc9ac3ad61d98f68ac1e1804761 https://www.encodeproject.org/files/ENCFF843NNY/@@download/ENCFF843NNY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF408WCC bam unfiltered alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF365YXG, ENCFF392CXN, ENCFF807MUK 5084939114 ENCODE Processing Pipeline b094ce913eeff1444cd667e1e0b2772d https://www.encodeproject.org/files/ENCFF408WCC/@@download/ENCFF408WCC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF583MUL bam unfiltered alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF365YXG, ENCFF392CXN, ENCFF643CGH 5090997935 ENCODE Processing Pipeline cd70261ae7c3d799720a6289751eb971 https://www.encodeproject.org/files/ENCFF583MUL/@@download/ENCFF583MUL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF532XHX bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF365YXG, ENCFF392CXN, ENCFF643CGH 4402869375 ENCODE Processing Pipeline a6622e0997e14371a698733d22dc1c57 https://www.encodeproject.org/files/ENCFF532XHX/@@download/ENCFF532XHX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF049GME bam unfiltered alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF620OZQ, ENCFF807MUK, ENCFF889HHE 6200429333 ENCODE Processing Pipeline 3f540f301460ed3cb9c06c97b0cac3ab https://www.encodeproject.org/files/ENCFF049GME/@@download/ENCFF049GME.bam hg19 released missing genetic modification characterization missing control alignments ENCFF390ACA bam unfiltered alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF620OZQ, ENCFF643CGH, ENCFF889HHE 6207227381 ENCODE Processing Pipeline d1fc212d3b7d8e08a2b5f88e8dbfb2ba https://www.encodeproject.org/files/ENCFF390ACA/@@download/ENCFF390ACA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF616KOM bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF620OZQ, ENCFF807MUK, ENCFF889HHE 5405815553 ENCODE Processing Pipeline fc955c535f3d6eba4155f51a3c047fcb https://www.encodeproject.org/files/ENCFF616KOM/@@download/ENCFF616KOM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF112UNI bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF620OZQ, ENCFF643CGH, ENCFF889HHE 5408231409 ENCODE Processing Pipeline 946e90709d056d4195754063e7155cd6 https://www.encodeproject.org/files/ENCFF112UNI/@@download/ENCFF112UNI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF495NNF bigWig signal p-value ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF616KOM 1306137523 ENCODE Processing Pipeline 2042f69cb70d3d4d7a4d6f8f71660e4f https://www.encodeproject.org/files/ENCFF495NNF/@@download/ENCFF495NNF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF013TRA bigWig signal p-value ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF843NNY 1226537714 ENCODE Processing Pipeline ad17021dce41d52f06f3354bb3e55e38 https://www.encodeproject.org/files/ENCFF013TRA/@@download/ENCFF013TRA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF141TQC bigWig signal p-value ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF616KOM, ENCFF843NNY 1956237371 ENCODE Processing Pipeline 4c8ed74ad49c9ad41daf33866ca6860a https://www.encodeproject.org/files/ENCFF141TQC/@@download/ENCFF141TQC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF849JIL bigWig fold change over control ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF616KOM, ENCFF843NNY 1974949361 ENCODE Processing Pipeline 55a3c32cb959c3735ee92a49631bc423 https://www.encodeproject.org/files/ENCFF849JIL/@@download/ENCFF849JIL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF938WDH bigWig fold change over control ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF616KOM 1492048468 ENCODE Processing Pipeline affff7c6ab88de02fce5f377b9fb05a3 https://www.encodeproject.org/files/ENCFF938WDH/@@download/ENCFF938WDH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF318ZNF bigWig fold change over control ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF843NNY 1341533557 ENCODE Processing Pipeline ad0beb62128569381630b7424acbaaf3 https://www.encodeproject.org/files/ENCFF318ZNF/@@download/ENCFF318ZNF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF828MTJ bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF616KOM 7102953 ENCODE Processing Pipeline e9ff0ed4c39b251826e91d13afc9fa19 https://www.encodeproject.org/files/ENCFF828MTJ/@@download/ENCFF828MTJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF420BNC bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF843NNY 6858918 ENCODE Processing Pipeline f8c5c8cf514ab822b44406dd1e94a5da https://www.encodeproject.org/files/ENCFF420BNC/@@download/ENCFF420BNC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF501YLT bigBed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF420BNC 13323096 ENCODE Processing Pipeline 985064eaba08645ef84bade991622922 https://www.encodeproject.org/files/ENCFF501YLT/@@download/ENCFF501YLT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF107UOL bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF616KOM, ENCFF843NNY 7276943 ENCODE Processing Pipeline c969b3381df1213f88fc1ca85eae8c6b https://www.encodeproject.org/files/ENCFF107UOL/@@download/ENCFF107UOL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF510BSF bigBed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF828MTJ 13174067 ENCODE Processing Pipeline 523b3f404ecc87ca526031fef57f6dc1 https://www.encodeproject.org/files/ENCFF510BSF/@@download/ENCFF510BSF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF090OCT bigBed narrowPeak optimal idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF921HJY 1031484 ENCODE Processing Pipeline 4af9c79ded9939fdacbdc7a038246e66 https://www.encodeproject.org/files/ENCFF090OCT/@@download/ENCFF090OCT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF921HJY bed narrowPeak optimal idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF107UOL, ENCFF420BNC, ENCFF828MTJ 537584 ENCODE Processing Pipeline c806b7431115d3fdeca96e23ad3e7551 https://www.encodeproject.org/files/ENCFF921HJY/@@download/ENCFF921HJY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF823NYU bigBed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF107UOL 13117920 ENCODE Processing Pipeline 7cfdbd581c52b82922aa59346ac795c2 https://www.encodeproject.org/files/ENCFF823NYU/@@download/ENCFF823NYU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF467ENC bed narrowPeak conservative idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF107UOL, ENCFF420BNC, ENCFF828MTJ 456806 ENCODE Processing Pipeline 339f6e9b26f2617a1c0636cb7eda06ed https://www.encodeproject.org/files/ENCFF467ENC/@@download/ENCFF467ENC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF163JHR bigBed narrowPeak conservative idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF467ENC 906342 ENCODE Processing Pipeline 38a42481f196cd15f2ab2acb3b8b075b https://www.encodeproject.org/files/ENCFF163JHR/@@download/ENCFF163JHR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF881GWB bigWig signal p-value ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF112UNI 1232260191 ENCODE Processing Pipeline 3730a045c78acad1ce4553b9ebb5c547 https://www.encodeproject.org/files/ENCFF881GWB/@@download/ENCFF881GWB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF545HUG bigWig signal p-value ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF532XHX 1169047607 ENCODE Processing Pipeline 30ec24c0d48bbc242b2cd430b59c1aac https://www.encodeproject.org/files/ENCFF545HUG/@@download/ENCFF545HUG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF404BNF bigWig signal p-value ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF112UNI, ENCFF532XHX 1992223793 ENCODE Processing Pipeline 90b7f63e28e7c8badf93a00c66042888 https://www.encodeproject.org/files/ENCFF404BNF/@@download/ENCFF404BNF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF095WRW bigWig fold change over control ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF112UNI 1499998627 ENCODE Processing Pipeline 4855481f85bbca78da9c92a9b2855a09 https://www.encodeproject.org/files/ENCFF095WRW/@@download/ENCFF095WRW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF348XJD bigWig fold change over control ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF532XHX 1341776258 ENCODE Processing Pipeline dc88913e24847b3044f24e0e9aac8149 https://www.encodeproject.org/files/ENCFF348XJD/@@download/ENCFF348XJD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF525DEC bigWig fold change over control ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF112UNI, ENCFF532XHX 2008137210 ENCODE Processing Pipeline 7e83d9ced7feee01eaead75717f411c2 https://www.encodeproject.org/files/ENCFF525DEC/@@download/ENCFF525DEC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF274PPR bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF112UNI 7106569 ENCODE Processing Pipeline 1b5a09678891c13a7f5cc7d6fca335be https://www.encodeproject.org/files/ENCFF274PPR/@@download/ENCFF274PPR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF402JJL bed narrowPeak conservative idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF274PPR, ENCFF356UUH, ENCFF419RSJ, ENCFF699QMX 455179 ENCODE Processing Pipeline 1ddcc9b203ea7c294718e68809c7fdd5 https://www.encodeproject.org/files/ENCFF402JJL/@@download/ENCFF402JJL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF334OOK bigBed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF274PPR 13188253 ENCODE Processing Pipeline 54894019a6b8dfe6bed65f747f024eff https://www.encodeproject.org/files/ENCFF334OOK/@@download/ENCFF334OOK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF385GBJ bigBed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF699QMX 13130072 ENCODE Processing Pipeline 4cc8944e19c359b1e15941c3c1178fce https://www.encodeproject.org/files/ENCFF385GBJ/@@download/ENCFF385GBJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF356UUH bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF532XHX 6861476 ENCODE Processing Pipeline 23c378d509e531d28d16a239cc83fc67 https://www.encodeproject.org/files/ENCFF356UUH/@@download/ENCFF356UUH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF699QMX bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF112UNI, ENCFF532XHX 7281234 ENCODE Processing Pipeline ae59169effe94c0bf7ade253d80dfb8a https://www.encodeproject.org/files/ENCFF699QMX/@@download/ENCFF699QMX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF624ADT bigBed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF356UUH 13332294 ENCODE Processing Pipeline fb1219b5a85dad8492766f3ae7efda28 https://www.encodeproject.org/files/ENCFF624ADT/@@download/ENCFF624ADT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF908OQL bigBed narrowPeak conservative idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF402JJL 906802 ENCODE Processing Pipeline f7078bb1b034570422855f0575519e7a https://www.encodeproject.org/files/ENCFF908OQL/@@download/ENCFF908OQL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF233DCN bed narrowPeak optimal idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF274PPR, ENCFF356UUH, ENCFF419RSJ, ENCFF699QMX 534681 ENCODE Processing Pipeline 60f0bd1bbe86382e0c5f5b5d7d429fe5 https://www.encodeproject.org/files/ENCFF233DCN/@@download/ENCFF233DCN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF646FEQ bigBed narrowPeak optimal idr thresholded peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF233DCN 1029797 ENCODE Processing Pipeline 079654686a567354a8443546fb6f6676 https://www.encodeproject.org/files/ENCFF646FEQ/@@download/ENCFF646FEQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF000QHI bigBed broadPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001ULL 429738 Richard Myers, HAIB f9536abec6c1132b6776373996d03954 https://www.encodeproject.org/files/ENCFF000QHI/@@download/ENCFF000QHI.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000QHJ bigBed broadPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001ULM 312248 Richard Myers, HAIB f0b40451cfa204ef928d79c8dbddec86 https://www.encodeproject.org/files/ENCFF000QHJ/@@download/ENCFF000QHJ.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000QHL bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QIB 1857020943 Richard Myers, HAIB d002541fee6a8bddb5c89aa53dd7eb02 https://www.encodeproject.org/files/ENCFF000QHL/@@download/ENCFF000QHL.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000QHM bigWig raw signal ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 30382906 Richard Myers, HAIB 084d8d7262ad06fc523850182e3ad6b7 https://www.encodeproject.org/files/ENCFF000QHM/@@download/ENCFF000QHM.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000QHN bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QID 2074379467 Richard Myers, HAIB d28d623b6fff281f9f0b2ffd405b97d0 https://www.encodeproject.org/files/ENCFF000QHN/@@download/ENCFF000QHN.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000QHO bigWig raw signal ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 20159200 Richard Myers, HAIB 05494b1e2ab8745803258f35a08125a5 https://www.encodeproject.org/files/ENCFF000QHO/@@download/ENCFF000QHO.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000QIB fastq reads ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1775274771 Richard Myers, HAIB 753d7cbd2c5bb0aa7a27db2b3f1c232b https://www.encodeproject.org/files/ENCFF000QIB/@@download/ENCFF000QIB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000QID fastq reads ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1970505014 Richard Myers, HAIB c39c0243f34877beff7e07e55223824f https://www.encodeproject.org/files/ENCFF000QID/@@download/ENCFF000QID.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFJ/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001ULL bed broadPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 234403 Richard Myers, HAIB 9e621be00defddae25724931841fa8b5 https://www.encodeproject.org/files/ENCFF001ULL/@@download/ENCFF001ULL.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001ULM bed broadPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 143298 Richard Myers, HAIB dd498413aa76fb71d86c44612010229d https://www.encodeproject.org/files/ENCFF001ULM/@@download/ENCFF001ULM.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CMQ bed narrowPeak optimal idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 221518 ENCODE Consortium Analysis Working Group 3e5196912f2efefafdfbb24469bf2423 https://www.encodeproject.org/files/ENCFF002CMQ/@@download/ENCFF002CMQ.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF991EKU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CMQ 526292 ENCODE Consortium faf17c07e3e7d8f7d3a82774dd0fc630 https://www.encodeproject.org/files/ENCFF991EKU/@@download/ENCFF991EKU.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF989BZQ bam unfiltered alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIB, ENCFF643CGH 1989527175 ENCODE Processing Pipeline bfd473c4fae8e4a38bed42edd2c20c03 https://www.encodeproject.org/files/ENCFF989BZQ/@@download/ENCFF989BZQ.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF222UZK bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIB, ENCFF643CGH 1296042131 ENCODE Processing Pipeline 9c4f3d1e8c601da3d6169561b011b774 https://www.encodeproject.org/files/ENCFF222UZK/@@download/ENCFF222UZK.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF560FJD bam unfiltered alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QID, ENCFF643CGH 2223125883 ENCODE Processing Pipeline 8f461e79f9b21d3b3213872d0087d661 https://www.encodeproject.org/files/ENCFF560FJD/@@download/ENCFF560FJD.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF526DBU bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QID, ENCFF643CGH 1470060274 ENCODE Processing Pipeline 20b7e2b1fa239e377d49ad247f1cfaaf https://www.encodeproject.org/files/ENCFF526DBU/@@download/ENCFF526DBU.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF876COD bam unfiltered alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIB, ENCFF807MUK 1984243732 ENCODE Processing Pipeline 42f979f34f523624afd00052d6fcf760 https://www.encodeproject.org/files/ENCFF876COD/@@download/ENCFF876COD.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF404IDD bam unfiltered alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QID, ENCFF807MUK 2214226379 ENCODE Processing Pipeline 6f06778e694435df45c347cf5ff17660 https://www.encodeproject.org/files/ENCFF404IDD/@@download/ENCFF404IDD.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF448TVU bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIB, ENCFF807MUK 1296506873 ENCODE Processing Pipeline abe25ba4670746723789251d9e1a7139 https://www.encodeproject.org/files/ENCFF448TVU/@@download/ENCFF448TVU.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF711QEM bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QID, ENCFF807MUK 1470601491 ENCODE Processing Pipeline dfb68d2387b539ec5079fb0b50671034 https://www.encodeproject.org/files/ENCFF711QEM/@@download/ENCFF711QEM.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF997GFC bigWig signal p-value ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF222UZK, ENCFF533FQH, ENCFF836OEO 983595831 ENCODE Processing Pipeline 3bb20a4853376f9c0569545e753458af https://www.encodeproject.org/files/ENCFF997GFC/@@download/ENCFF997GFC.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF264KML bigWig signal p-value ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF526DBU, ENCFF533FQH, ENCFF836OEO 1018124105 ENCODE Processing Pipeline 1a5539a2c128c8ea38e4a88080823043 https://www.encodeproject.org/files/ENCFF264KML/@@download/ENCFF264KML.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF641YMU bigWig signal p-value ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF222UZK, ENCFF526DBU, ENCFF533FQH, ENCFF836OEO 1390868577 ENCODE Processing Pipeline 279e1ad3698ecb2be26a308eeb4a45b8 https://www.encodeproject.org/files/ENCFF641YMU/@@download/ENCFF641YMU.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF964JOG bigWig fold change over control ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF222UZK, ENCFF533FQH, ENCFF836OEO 858150727 ENCODE Processing Pipeline 0cc7c32c4c1caac7b0387ded74ba94ff https://www.encodeproject.org/files/ENCFF964JOG/@@download/ENCFF964JOG.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF738ISI bigWig fold change over control ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF222UZK, ENCFF526DBU, ENCFF533FQH, ENCFF836OEO 1351596151 ENCODE Processing Pipeline 43cd8947ad562cfae79bbc2ab73af965 https://www.encodeproject.org/files/ENCFF738ISI/@@download/ENCFF738ISI.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF253IEH bigWig fold change over control ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF526DBU, ENCFF533FQH, ENCFF836OEO 922958129 ENCODE Processing Pipeline 763f61ecd6850a0fcbb78fbb194e3f9c https://www.encodeproject.org/files/ENCFF253IEH/@@download/ENCFF253IEH.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF788VWT bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF222UZK, ENCFF533FQH, ENCFF836OEO 6222897 ENCODE Processing Pipeline 54254c31c8f876ab8e61083e9d1c4523 https://www.encodeproject.org/files/ENCFF788VWT/@@download/ENCFF788VWT.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF489GYZ bigBed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF651KJX 13412398 ENCODE Processing Pipeline 001d25cc96b6b4e1d2fccfc7f58edfaf https://www.encodeproject.org/files/ENCFF489GYZ/@@download/ENCFF489GYZ.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF651KJX bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF222UZK, ENCFF526DBU, ENCFF533FQH, ENCFF836OEO 6834126 ENCODE Processing Pipeline 30af8f308b4b5023fc7195e6db502b05 https://www.encodeproject.org/files/ENCFF651KJX/@@download/ENCFF651KJX.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF916OUG bed narrowPeak conservative idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313VQW, ENCFF419RSJ, ENCFF651KJX, ENCFF788VWT 168648 ENCODE Processing Pipeline c43ed1d7e6aa9735cf1fe51825df27ed https://www.encodeproject.org/files/ENCFF916OUG/@@download/ENCFF916OUG.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF065VPF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF916OUG 382971 ENCODE Processing Pipeline 2875015d63ac92c1311443844f03d414 https://www.encodeproject.org/files/ENCFF065VPF/@@download/ENCFF065VPF.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF313VQW bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF526DBU, ENCFF533FQH, ENCFF836OEO 6072430 ENCODE Processing Pipeline 42b19a4904c846138e74f4eaef8128bc https://www.encodeproject.org/files/ENCFF313VQW/@@download/ENCFF313VQW.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF517IXK bed narrowPeak optimal idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313VQW, ENCFF419RSJ, ENCFF651KJX, ENCFF788VWT 236998 ENCODE Processing Pipeline 25aaa0e8f779d8d52cd52bed7d3e3c34 https://www.encodeproject.org/files/ENCFF517IXK/@@download/ENCFF517IXK.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF930EDE bigBed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF788VWT 13404554 ENCODE Processing Pipeline 10eeaa396281742a8d4864b7e9aee2b7 https://www.encodeproject.org/files/ENCFF930EDE/@@download/ENCFF930EDE.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF896AZL bigBed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF313VQW 11344552 ENCODE Processing Pipeline 544629796b87fc3dbf634daf06a07941 https://www.encodeproject.org/files/ENCFF896AZL/@@download/ENCFF896AZL.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF994QPA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF517IXK 481509 ENCODE Processing Pipeline 07e0e34298b24eec186e8a7d49705ce3 https://www.encodeproject.org/files/ENCFF994QPA/@@download/ENCFF994QPA.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF199ALJ bigWig signal p-value ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF448TVU, ENCFF522HDC, ENCFF727JYL 1000340789 ENCODE Processing Pipeline f404e838e1e8ba42a853d9366a4171d8 https://www.encodeproject.org/files/ENCFF199ALJ/@@download/ENCFF199ALJ.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF722WMT bigWig fold change over control ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF448TVU, ENCFF522HDC, ENCFF727JYL 871968723 ENCODE Processing Pipeline c29ea4e91312c02da099f23c5da733de https://www.encodeproject.org/files/ENCFF722WMT/@@download/ENCFF722WMT.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF253AWU bigWig signal p-value ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 1113344000 ENCODE Processing Pipeline 56ee7d62db7b3fe1694e7e32e4c83867 https://www.encodeproject.org/files/ENCFF253AWU/@@download/ENCFF253AWU.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF746KSV bigWig signal p-value ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF448TVU, ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 1171653920 ENCODE Processing Pipeline 976ceefb960790db0178b97e76dc4082 https://www.encodeproject.org/files/ENCFF746KSV/@@download/ENCFF746KSV.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF373WLW bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF448TVU, ENCFF522HDC, ENCFF727JYL 6224554 ENCODE Processing Pipeline 63cf6cc7aeb614a2c75208157d5e59db https://www.encodeproject.org/files/ENCFF373WLW/@@download/ENCFF373WLW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF562UJV bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 6125895 ENCODE Processing Pipeline 4fe3ea1090463a5a9479a4052efef902 https://www.encodeproject.org/files/ENCFF562UJV/@@download/ENCFF562UJV.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF556KAN bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF448TVU, ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 6855621 ENCODE Processing Pipeline 5597f3e31d0ec9d2934628ea38c5037b https://www.encodeproject.org/files/ENCFF556KAN/@@download/ENCFF556KAN.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF506CUM bigBed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF562UJV 11356294 ENCODE Processing Pipeline f99e598ab582a78cca271901b10f9006 https://www.encodeproject.org/files/ENCFF506CUM/@@download/ENCFF506CUM.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF082PNV bigWig fold change over control ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 927693642 ENCODE Processing Pipeline abd3a7d37370309fec66c59fb5b9577b https://www.encodeproject.org/files/ENCFF082PNV/@@download/ENCFF082PNV.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF885JRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF696KPD 487067 ENCODE Processing Pipeline d883871d8eb32e6026b24661481a2f9d https://www.encodeproject.org/files/ENCFF885JRR/@@download/ENCFF885JRR.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF832FFP bigWig fold change over control ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF448TVU, ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 1348285513 ENCODE Processing Pipeline 374416bfaecd580901d6387401a5c2b4 https://www.encodeproject.org/files/ENCFF832FFP/@@download/ENCFF832FFP.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF126MOY bed narrowPeak conservative idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF373WLW, ENCFF556KAN, ENCFF562UJV 175641 ENCODE Processing Pipeline 2746234744df3cd478f150b01f6ea2a5 https://www.encodeproject.org/files/ENCFF126MOY/@@download/ENCFF126MOY.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF631JIT bigBed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF373WLW 13402850 ENCODE Processing Pipeline 334ce4ef1acf85cab072f10a944448fb https://www.encodeproject.org/files/ENCFF631JIT/@@download/ENCFF631JIT.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF087XZN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF126MOY 391197 ENCODE Processing Pipeline 47aaf38be18563d087f6f56a42aa8dfa https://www.encodeproject.org/files/ENCFF087XZN/@@download/ENCFF087XZN.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF696KPD bed narrowPeak optimal idr thresholded peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF373WLW, ENCFF556KAN, ENCFF562UJV 241687 ENCODE Processing Pipeline c7fe8f342e3192db1d65922e864f8c7e https://www.encodeproject.org/files/ENCFF696KPD/@@download/ENCFF696KPD.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF399LBK bigBed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF556KAN 13426352 ENCODE Processing Pipeline c1d3d9786b9fd7a6020a29c2b98ab40b https://www.encodeproject.org/files/ENCFF399LBK/@@download/ENCFF399LBK.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF578UQO bam unfiltered alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 100 ENCFF446XHP, ENCFF546YEQ, ENCFF807MUK 6627034754 ENCODE Processing Pipeline e4b7782202acde856d1bfb31673d0158 https://www.encodeproject.org/files/ENCFF578UQO/@@download/ENCFF578UQO.bam hg19 released ENCFF856TCB bam unfiltered alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 100 ENCFF382GYA, ENCFF807MUK, ENCFF841ZHV 5225824840 ENCODE Processing Pipeline e6415c680cb772fdfddf5fa9b32536ae https://www.encodeproject.org/files/ENCFF856TCB/@@download/ENCFF856TCB.bam hg19 released ENCFF546YEQ fastq reads ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 1 ENCFF446XHP 3046050348 Michael Snyder, Stanford 01134128bef3f8d95d855971de0ae5b8 SRA:SRR6213127 https://www.encodeproject.org/files/ENCFF546YEQ/@@download/ENCFF546YEQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF382GYA fastq reads ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 1 100 paired-ended 2 ENCFF841ZHV 2443414899 Michael Snyder, Stanford 1b35a2dd374036a977f066b49ff2d05e SRA:SRR6213126 https://www.encodeproject.org/files/ENCFF382GYA/@@download/ENCFF382GYA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF446XHP fastq reads ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 2 ENCFF546YEQ 3137802665 Michael Snyder, Stanford d624af74e703a428301c3858d8ec94a2 SRA:SRR6213127 https://www.encodeproject.org/files/ENCFF446XHP/@@download/ENCFF446XHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF841ZHV fastq reads ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 1 100 paired-ended 1 ENCFF382GYA 2388641303 Michael Snyder, Stanford 7e62c17ccb93fb8191d98c757913b5d4 SRA:SRR6213126 https://www.encodeproject.org/files/ENCFF841ZHV/@@download/ENCFF841ZHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF948XRU bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 100 ENCFF446XHP, ENCFF546YEQ, ENCFF807MUK 5337272684 ENCODE Processing Pipeline ab762f3901a29161882b66987fc05fbe https://www.encodeproject.org/files/ENCFF948XRU/@@download/ENCFF948XRU.bam hg19 released ENCFF921BVG bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 100 ENCFF382GYA, ENCFF807MUK, ENCFF841ZHV 4237822844 ENCODE Processing Pipeline e826691c62ce1915a44f010746335089 https://www.encodeproject.org/files/ENCFF921BVG/@@download/ENCFF921BVG.bam hg19 released ENCFF944EOP bigWig signal p-value ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF921BVG 1083853720 ENCODE Processing Pipeline 53b60c295b5fa53fa293a4301125c65a https://www.encodeproject.org/files/ENCFF944EOP/@@download/ENCFF944EOP.bigWig hg19 released ENCFF528HUS bigWig signal p-value ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF581ZJL, ENCFF948XRU 1364350916 ENCODE Processing Pipeline 005c4d81c88311488bca8cdcd3445e47 https://www.encodeproject.org/files/ENCFF528HUS/@@download/ENCFF528HUS.bigWig hg19 released ENCFF943YRH bigWig fold change over control ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF581ZJL, ENCFF948XRU 1335812762 ENCODE Processing Pipeline 9062ea607a0b567685ba15dec8c2750b https://www.encodeproject.org/files/ENCFF943YRH/@@download/ENCFF943YRH.bigWig hg19 released ENCFF359KGI bigWig fold change over control ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF921BVG 1115990581 ENCODE Processing Pipeline 12d6da1c9e9de8858b9f5c8e9b7cf601 https://www.encodeproject.org/files/ENCFF359KGI/@@download/ENCFF359KGI.bigWig hg19 released ENCFF990IZY bam unfiltered alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 100 ENCFF446XHP, ENCFF546YEQ, ENCFF643CGH 6631900105 ENCODE Processing Pipeline 9ac297fa9520c124a9444d544e33bb16 https://www.encodeproject.org/files/ENCFF990IZY/@@download/ENCFF990IZY.bam GRCh38 released ENCFF986DNW bam unfiltered alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 100 ENCFF382GYA, ENCFF643CGH, ENCFF841ZHV 5230779288 ENCODE Processing Pipeline 7a1d234cac572c8aba85f54c1f9fb89c https://www.encodeproject.org/files/ENCFF986DNW/@@download/ENCFF986DNW.bam GRCh38 released ENCFF258DFY bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 100 ENCFF382GYA, ENCFF643CGH, ENCFF841ZHV 4239575023 ENCODE Processing Pipeline ac07e8792229a80001cdda9f034676c4 https://www.encodeproject.org/files/ENCFF258DFY/@@download/ENCFF258DFY.bam GRCh38 released ENCFF490XTX bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 100 ENCFF446XHP, ENCFF546YEQ, ENCFF643CGH 5340524575 ENCODE Processing Pipeline 25811220501de9f020b6350c0a86c669 https://www.encodeproject.org/files/ENCFF490XTX/@@download/ENCFF490XTX.bam GRCh38 released ENCFF724NGQ bigWig signal p-value ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF490XTX, ENCFF910IKB 1143813930 ENCODE Processing Pipeline 7e3eb48613696919723a27760f4aa5c4 https://www.encodeproject.org/files/ENCFF724NGQ/@@download/ENCFF724NGQ.bigWig GRCh38 released ENCFF843WPS bigWig signal p-value ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF227IZS, ENCFF258DFY 1028140308 ENCODE Processing Pipeline d8faa272b65b2bd361fa34c496c0c13d https://www.encodeproject.org/files/ENCFF843WPS/@@download/ENCFF843WPS.bigWig GRCh38 released ENCFF709FQR bigWig signal p-value ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF227IZS, ENCFF258DFY, ENCFF490XTX, ENCFF910IKB 1862214772 ENCODE Processing Pipeline db2d8c143a8ad1d289fe0e7dd28868a4 https://www.encodeproject.org/files/ENCFF709FQR/@@download/ENCFF709FQR.bigWig GRCh38 released ENCFF865NGU bigWig fold change over control ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF490XTX, ENCFF910IKB 1358825204 ENCODE Processing Pipeline 0b2fe26c3fbe0e4de299a82de34ec975 https://www.encodeproject.org/files/ENCFF865NGU/@@download/ENCFF865NGU.bigWig GRCh38 released ENCFF198HVQ bigWig fold change over control ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF227IZS, ENCFF258DFY 1132761859 ENCODE Processing Pipeline a992d5dc6649bb55069f45eaaba74060 https://www.encodeproject.org/files/ENCFF198HVQ/@@download/ENCFF198HVQ.bigWig GRCh38 released ENCFF578UME bigWig fold change over control ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF227IZS, ENCFF258DFY, ENCFF490XTX, ENCFF910IKB 2204382834 ENCODE Processing Pipeline 108fab368e9782a064b3436e1c869e50 https://www.encodeproject.org/files/ENCFF578UME/@@download/ENCFF578UME.bigWig GRCh38 released ENCFF532RNU bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF490XTX, ENCFF910IKB 7108405 ENCODE Processing Pipeline d562ca45bb58dc624a64faa51f0bd61f https://www.encodeproject.org/files/ENCFF532RNU/@@download/ENCFF532RNU.bed.gz GRCh38 released ENCFF365OEO bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF227IZS, ENCFF258DFY 6680109 ENCODE Processing Pipeline 436eeca6ef723befcb0af3718861549c https://www.encodeproject.org/files/ENCFF365OEO/@@download/ENCFF365OEO.bed.gz GRCh38 released ENCFF711LIH bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF227IZS, ENCFF258DFY, ENCFF490XTX, ENCFF910IKB 7266016 ENCODE Processing Pipeline 78e8152816e1e52dc89aab67c38072a7 https://www.encodeproject.org/files/ENCFF711LIH/@@download/ENCFF711LIH.bed.gz GRCh38 released ENCFF808ZQB bigBed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF532RNU 12855465 ENCODE Processing Pipeline 2997a3aeecd93b7c6b3031a7a8b7a701 https://www.encodeproject.org/files/ENCFF808ZQB/@@download/ENCFF808ZQB.bigBed GRCh38 released ENCFF891BHR bigBed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF365OEO 13236056 ENCODE Processing Pipeline c08fd758241682c332eafab012aba9b0 https://www.encodeproject.org/files/ENCFF891BHR/@@download/ENCFF891BHR.bigBed GRCh38 released ENCFF911MBA bigBed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF711LIH 12789640 ENCODE Processing Pipeline 954052074b571dd0031ac28173af2d0b https://www.encodeproject.org/files/ENCFF911MBA/@@download/ENCFF911MBA.bigBed GRCh38 released ENCFF446YER bed narrowPeak conservative idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF365OEO, ENCFF419RSJ, ENCFF532RNU, ENCFF711LIH 222312 ENCODE Processing Pipeline 255d56b1e5d669c149171265fdfbe76f https://www.encodeproject.org/files/ENCFF446YER/@@download/ENCFF446YER.bed.gz GRCh38 released ENCFF352LFP bigBed narrowPeak conservative idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF446YER 493718 ENCODE Processing Pipeline e1b86641f3c4aebfdaa893ba72a19689 https://www.encodeproject.org/files/ENCFF352LFP/@@download/ENCFF352LFP.bigBed GRCh38 released ENCFF445KQZ bigBed narrowPeak optimal idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF655EFA 625291 ENCODE Processing Pipeline a233e02c4f532167c5277d7790ea995e https://www.encodeproject.org/files/ENCFF445KQZ/@@download/ENCFF445KQZ.bigBed GRCh38 released ENCFF655EFA bed narrowPeak optimal idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF365OEO, ENCFF419RSJ, ENCFF532RNU, ENCFF711LIH 304147 ENCODE Processing Pipeline e59659a28b1920affc1dc60214f358c4 https://www.encodeproject.org/files/ENCFF655EFA/@@download/ENCFF655EFA.bed.gz GRCh38 released ENCFF107LZF bigBed narrowPeak optimal idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF471ZTZ 632039 ENCODE Processing Pipeline 60084aeabb2ab89c7266717ad10073f4 https://www.encodeproject.org/files/ENCFF107LZF/@@download/ENCFF107LZF.bigBed hg19 released ENCFF738ADF bigWig fold change over control ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF921BVG, ENCFF948XRU 2200729849 ENCODE Processing Pipeline 7f3f5ed93ccd6bb5f6150f848a62b9be https://www.encodeproject.org/files/ENCFF738ADF/@@download/ENCFF738ADF.bigWig hg19 released ENCFF848FSH bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF921BVG, ENCFF948XRU 7260496 ENCODE Processing Pipeline 6ed6bde5b6fce4621dd2e4bb9a8bc089 https://www.encodeproject.org/files/ENCFF848FSH/@@download/ENCFF848FSH.bed.gz hg19 released ENCFF180YTD bigBed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF505URD 12849600 ENCODE Processing Pipeline 27be650cbb9d5632093ca319edacea83 https://www.encodeproject.org/files/ENCFF180YTD/@@download/ENCFF180YTD.bigBed hg19 released ENCFF032MDN bed narrowPeak conservative idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF505URD, ENCFF829KFC, ENCFF848FSH 219423 ENCODE Processing Pipeline c0ba57087eddfc09918d0b562f256a94 https://www.encodeproject.org/files/ENCFF032MDN/@@download/ENCFF032MDN.bed.gz hg19 released ENCFF829KFC bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF921BVG 6680008 ENCODE Processing Pipeline 9916a25b6b7c1363fbfb629df670f9c3 https://www.encodeproject.org/files/ENCFF829KFC/@@download/ENCFF829KFC.bed.gz hg19 released ENCFF244TTR bigBed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF848FSH 12778126 ENCODE Processing Pipeline 9e180d2e29229adb27ccc268758c81cf https://www.encodeproject.org/files/ENCFF244TTR/@@download/ENCFF244TTR.bigBed hg19 released ENCFF038XDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF032MDN 487816 ENCODE Processing Pipeline d6aa831a55f7b641e49f610e37b3b8d8 https://www.encodeproject.org/files/ENCFF038XDZ/@@download/ENCFF038XDZ.bigBed hg19 released ENCFF942IXW bigBed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF829KFC 13226433 ENCODE Processing Pipeline 38a5fb7d41281809c061655e22e00ecd https://www.encodeproject.org/files/ENCFF942IXW/@@download/ENCFF942IXW.bigBed hg19 released ENCFF471ZTZ bed narrowPeak optimal idr thresholded peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF505URD, ENCFF829KFC, ENCFF848FSH 309156 ENCODE Processing Pipeline 720a3ea4fe1bb47e81c212a2969a67f6 https://www.encodeproject.org/files/ENCFF471ZTZ/@@download/ENCFF471ZTZ.bed.gz hg19 released ENCFF852PAQ bigWig signal p-value ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF921BVG, ENCFF948XRU 1762678779 ENCODE Processing Pipeline c9bd48386ac6a0a8745c93222e594915 https://www.encodeproject.org/files/ENCFF852PAQ/@@download/ENCFF852PAQ.bigWig hg19 released ENCFF505URD bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF581ZJL, ENCFF948XRU 7107880 ENCODE Processing Pipeline daaf9e7a697b0d64edcb01c4a0f21f2a https://www.encodeproject.org/files/ENCFF505URD/@@download/ENCFF505URD.bed.gz hg19 released ENCFF606ZKP fastq reads ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 1 36 paired-ended 1 ENCFF908SZA 552190781 Bradley Bernstein, Broad 5b8f11c3ad1c48307baede88a7250198 https://www.encodeproject.org/files/ENCFF606ZKP/@@download/ENCFF606ZKP.fastq.gz Illumina HiSeq 2500 /files/ENCFF303RYF/, /files/ENCFF324AOR/, /files/ENCFF337HED/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, mismatched status, experiment not submitted to GEO ENCFF908SZA fastq reads ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 1 25 paired-ended 2 ENCFF606ZKP 458645298 Bradley Bernstein, Broad 83478ce6e1fa88ec2445e05b58143581 https://www.encodeproject.org/files/ENCFF908SZA/@@download/ENCFF908SZA.fastq.gz Illumina HiSeq 2500 /files/ENCFF303RYF/, /files/ENCFF324AOR/, /files/ENCFF337HED/ archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF805VUU fastq reads ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 paired-ended 1 ENCFF890IBL 2041067016 Bradley Bernstein, Broad bd81a8ccc8d0a894c55d7fe96934cc33 https://www.encodeproject.org/files/ENCFF805VUU/@@download/ENCFF805VUU.fastq.gz Illumina HiSeq 2500 /files/ENCFF130NIU/, /files/ENCFF218VYP/, /files/ENCFF411REJ/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF890IBL fastq reads ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 paired-ended 2 ENCFF805VUU 2143910749 Bradley Bernstein, Broad 745ddc3b8494bd9a8c9b74cfcc18460f https://www.encodeproject.org/files/ENCFF890IBL/@@download/ENCFF890IBL.fastq.gz Illumina HiSeq 2500 /files/ENCFF204TNH/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF782SFI bam unfiltered alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF606ZKP, ENCFF643CGH 802999428 ENCODE Processing Pipeline 6669c9f3b23b28a8104d688f6f9df443 https://www.encodeproject.org/files/ENCFF782SFI/@@download/ENCFF782SFI.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF313RGT bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF606ZKP, ENCFF643CGH 559679591 ENCODE Processing Pipeline 992122e4aea6fb1847578d0a22735134 https://www.encodeproject.org/files/ENCFF313RGT/@@download/ENCFF313RGT.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF836JLJ bam unfiltered alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF606ZKP, ENCFF807MUK 798768838 ENCODE Processing Pipeline b51f5764677f620a42e82b49be638d8a https://www.encodeproject.org/files/ENCFF836JLJ/@@download/ENCFF836JLJ.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF370BVH bam unfiltered alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF643CGH, ENCFF805VUU 1557218992 ENCODE Processing Pipeline 9c9b0d39d9742cee04411c685b6e24ab https://www.encodeproject.org/files/ENCFF370BVH/@@download/ENCFF370BVH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF253RUM bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF606ZKP, ENCFF807MUK 560347862 ENCODE Processing Pipeline fbb7dfb26b19c10ec94433bcdb617237 https://www.encodeproject.org/files/ENCFF253RUM/@@download/ENCFF253RUM.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF681AFR bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF643CGH, ENCFF805VUU 714909734 ENCODE Processing Pipeline bb541818a98cbc5a369350de896278fb https://www.encodeproject.org/files/ENCFF681AFR/@@download/ENCFF681AFR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF289HRS bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF805VUU, ENCFF807MUK 715805601 ENCODE Processing Pipeline d91ac3846607b3e4a427702d25e4e722 https://www.encodeproject.org/files/ENCFF289HRS/@@download/ENCFF289HRS.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF973LTH bam unfiltered alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF805VUU, ENCFF807MUK 1549897421 ENCODE Processing Pipeline 2989427d9e7bd5fdb35c4884669f33ba https://www.encodeproject.org/files/ENCFF973LTH/@@download/ENCFF973LTH.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF595GMF bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF253RUM, ENCFF289HRS, ENCFF668YCW, ENCFF708VUG 6907545 ENCODE Processing Pipeline f0c6fbbf34ebaaacbf67d73970fde5d0 https://www.encodeproject.org/files/ENCFF595GMF/@@download/ENCFF595GMF.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF738HPS bigBed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF595GMF 13222573 ENCODE Processing Pipeline 6b979a435027a20a526572f2709b1770 https://www.encodeproject.org/files/ENCFF738HPS/@@download/ENCFF738HPS.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF110AED bigWig fold change over control ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF253RUM, ENCFF708VUG 588184228 ENCODE Processing Pipeline 4594aede62eb88b020f51170734efdfd https://www.encodeproject.org/files/ENCFF110AED/@@download/ENCFF110AED.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF032TXK bigWig fold change over control ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF253RUM, ENCFF289HRS, ENCFF668YCW, ENCFF708VUG 1268680367 ENCODE Processing Pipeline abeea0bf3714be35a02370ab6ca62b86 https://www.encodeproject.org/files/ENCFF032TXK/@@download/ENCFF032TXK.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF140TUL bigWig signal p-value ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF387DQY, ENCFF681AFR 714908932 ENCODE Processing Pipeline 2db368803206a449cb76358251fa46f2 https://www.encodeproject.org/files/ENCFF140TUL/@@download/ENCFF140TUL.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF661XCJ bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF387DQY, ENCFF681AFR 6166677 ENCODE Processing Pipeline eb0fad9f040427c765e054804dc3f5a4 https://www.encodeproject.org/files/ENCFF661XCJ/@@download/ENCFF661XCJ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF724CDP bigBed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF922USR 13059199 ENCODE Processing Pipeline d51c7c90126b01265b3ca1859acec796 https://www.encodeproject.org/files/ENCFF724CDP/@@download/ENCFF724CDP.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF850KMN bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF253RUM, ENCFF708VUG 6177706 ENCODE Processing Pipeline 8e73c1de339a2b522cce5399ebecbfad https://www.encodeproject.org/files/ENCFF850KMN/@@download/ENCFF850KMN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF801DGD bigBed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF578FSD 13294813 ENCODE Processing Pipeline 061daada27b567153c12fb1f140c8c3f https://www.encodeproject.org/files/ENCFF801DGD/@@download/ENCFF801DGD.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF607QGL bigBed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF850KMN 13088370 ENCODE Processing Pipeline db7b8f9ff2acb038c4b574f6556eb13f https://www.encodeproject.org/files/ENCFF607QGL/@@download/ENCFF607QGL.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF339WCI bigWig fold change over control ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF289HRS, ENCFF668YCW 584483700 ENCODE Processing Pipeline 3260939462233bbbdc6854d611debd51 https://www.encodeproject.org/files/ENCFF339WCI/@@download/ENCFF339WCI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF578FSD bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF289HRS, ENCFF668YCW 6174240 ENCODE Processing Pipeline 62dc1a5f5f88c297692e2532567a200b https://www.encodeproject.org/files/ENCFF578FSD/@@download/ENCFF578FSD.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF662IOC bed narrowPeak optimal idr thresholded peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF578FSD, ENCFF595GMF, ENCFF850KMN 889131 ENCODE Processing Pipeline 88ccf4f9fadb93f1bcfff9069c661557 https://www.encodeproject.org/files/ENCFF662IOC/@@download/ENCFF662IOC.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF845BUS bigWig signal p-value ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF289HRS, ENCFF668YCW 772529631 ENCODE Processing Pipeline fbea2fbd6db0e347d6abd7a85aa648b9 https://www.encodeproject.org/files/ENCFF845BUS/@@download/ENCFF845BUS.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF375UIG bigWig signal p-value ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF253RUM, ENCFF708VUG 671286324 ENCODE Processing Pipeline b0d53923e8305219416ee7766c3d3564 https://www.encodeproject.org/files/ENCFF375UIG/@@download/ENCFF375UIG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF955VTF bigWig signal p-value ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF253RUM, ENCFF289HRS, ENCFF668YCW, ENCFF708VUG 1259061906 ENCODE Processing Pipeline 38f9822aba16479c14f579f012138681 https://www.encodeproject.org/files/ENCFF955VTF/@@download/ENCFF955VTF.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF567YXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF662IOC 2014531 ENCODE Processing Pipeline 380904ebf470026b80995bb263d4ed34 https://www.encodeproject.org/files/ENCFF567YXZ/@@download/ENCFF567YXZ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF342RRQ bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF239QTJ, ENCFF313RGT, ENCFF387DQY, ENCFF681AFR 6908680 ENCODE Processing Pipeline 37b544a6aa04338a63637673f2d23ded https://www.encodeproject.org/files/ENCFF342RRQ/@@download/ENCFF342RRQ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF111QNV bigWig signal p-value ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF239QTJ, ENCFF313RGT, ENCFF387DQY, ENCFF681AFR 1275137204 ENCODE Processing Pipeline 876e10edcccc34acbfd4443275769358 https://www.encodeproject.org/files/ENCFF111QNV/@@download/ENCFF111QNV.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF922USR bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF239QTJ, ENCFF313RGT 6158997 ENCODE Processing Pipeline 6f759284ead3142d8d8317ed3cc7e532 https://www.encodeproject.org/files/ENCFF922USR/@@download/ENCFF922USR.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF457WLW bigBed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF342RRQ 13229652 ENCODE Processing Pipeline a6889d67a8f6d18cf4d5b43097b9bf7a https://www.encodeproject.org/files/ENCFF457WLW/@@download/ENCFF457WLW.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF649QKE bed narrowPeak optimal idr thresholded peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF342RRQ, ENCFF419RSJ, ENCFF661XCJ, ENCFF922USR 890499 ENCODE Processing Pipeline cab569d7622863bcf4ec21ea60eed0b6 https://www.encodeproject.org/files/ENCFF649QKE/@@download/ENCFF649QKE.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF887HTK bigWig fold change over control ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF387DQY, ENCFF681AFR 584875893 ENCODE Processing Pipeline 3a2b05815256a85ccbec9c44f0b25240 https://www.encodeproject.org/files/ENCFF887HTK/@@download/ENCFF887HTK.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF881LBU bigWig signal p-value ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF239QTJ, ENCFF313RGT 639726763 ENCODE Processing Pipeline f31d4b152b3b91d3465c369f787de89b https://www.encodeproject.org/files/ENCFF881LBU/@@download/ENCFF881LBU.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF283QKU bigWig fold change over control ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF239QTJ, ENCFF313RGT 586032739 ENCODE Processing Pipeline 97812727dd0eb1e186e6063c29a33a55 https://www.encodeproject.org/files/ENCFF283QKU/@@download/ENCFF283QKU.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF265BPR bigWig fold change over control ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF239QTJ, ENCFF313RGT, ENCFF387DQY, ENCFF681AFR 1278041804 ENCODE Processing Pipeline 4e16a93b196a1bcecbdc3deda195ba9c https://www.encodeproject.org/files/ENCFF265BPR/@@download/ENCFF265BPR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF453YBA bigBed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF661XCJ 13290477 ENCODE Processing Pipeline 2a6c0c3e3f8588be19dab13b6d073840 https://www.encodeproject.org/files/ENCFF453YBA/@@download/ENCFF453YBA.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF989KQO bigBed narrowPeak optimal idr thresholded peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF649QKE 2017170 ENCODE Processing Pipeline ef8f90de334ec6fcf3c026420a4c4d74 https://www.encodeproject.org/files/ENCFF989KQO/@@download/ENCFF989KQO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF000VUQ bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VVP 456470369 Michael Snyder, Stanford fa9c4893066d128ed24d5fc45becb67a https://www.encodeproject.org/files/ENCFF000VUQ/@@download/ENCFF000VUQ.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000VUR bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEF 4287815 Michael Snyder, Stanford 9ea716d6ee706518ae4bf35c691d5aae https://www.encodeproject.org/files/ENCFF000VUR/@@download/ENCFF000VUR.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000VUS bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VVQ 473944988 Michael Snyder, Stanford 91d0dd9e0df439dd6599914b5275e7b2 https://www.encodeproject.org/files/ENCFF000VUS/@@download/ENCFF000VUS.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000VUT bigWig signal ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 362265179 Michael Snyder, Stanford 166e1963016de1c4ec430b2a2e270706 https://www.encodeproject.org/files/ENCFF000VUT/@@download/ENCFF000VUT.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000VVP fastq reads ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1477117077 Michael Snyder, Stanford a6ff7c0c003cdfdc3341d1b3e4a22972 https://www.encodeproject.org/files/ENCFF000VVP/@@download/ENCFF000VVP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth ENCFF000VVQ fastq reads ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 994552200 Michael Snyder, Stanford 5e7f2eec5d5115f361ed5ec6f1b22b68 https://www.encodeproject.org/files/ENCFF000VVQ/@@download/ENCFF000VVQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth ENCFF001VEF bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1754078 Michael Snyder, Stanford 17446b393c16c1c904c2892dffa5086a https://www.encodeproject.org/files/ENCFF001VEF/@@download/ENCFF001VEF.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002COS bed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 787819 ENCODE Consortium Analysis Working Group 708f29d8a17c765e32e16b09c85c7017 https://www.encodeproject.org/files/ENCFF002COS/@@download/ENCFF002COS.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF795FDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COS 1680946 ENCODE Consortium b83f0a4c19ec9bd61321757f8aee7a16 https://www.encodeproject.org/files/ENCFF795FDZ/@@download/ENCFF795FDZ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF891JOR bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF643CGH 1552169472 ENCODE Processing Pipeline 80543928e4d531d41c56687db87e4884 https://www.encodeproject.org/files/ENCFF891JOR/@@download/ENCFF891JOR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF340SPK bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF643CGH 617910247 ENCODE Processing Pipeline 59a24cebb68d8f1f4a70ecf3af93815e https://www.encodeproject.org/files/ENCFF340SPK/@@download/ENCFF340SPK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF746KYL bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF643CGH 896835945 ENCODE Processing Pipeline 873f299ed6d40f2a415ceb625f57bbdf https://www.encodeproject.org/files/ENCFF746KYL/@@download/ENCFF746KYL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF891SOM bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF643CGH 1020644351 ENCODE Processing Pipeline 9a4842ea0ab6b490c960a92a241740a2 https://www.encodeproject.org/files/ENCFF891SOM/@@download/ENCFF891SOM.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF522BBQ bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF807MUK 1545267446 ENCODE Processing Pipeline 15e331ce75798c85a641a1de4c9dc455 https://www.encodeproject.org/files/ENCFF522BBQ/@@download/ENCFF522BBQ.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF317XPZ bam unfiltered alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF807MUK 1017728195 ENCODE Processing Pipeline cbd8102ee74f34205332cae9e433920b https://www.encodeproject.org/files/ENCFF317XPZ/@@download/ENCFF317XPZ.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF432WTX bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF807MUK 617859854 ENCODE Processing Pipeline 2c4883e93297daa02e341fcdd31ea417 https://www.encodeproject.org/files/ENCFF432WTX/@@download/ENCFF432WTX.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF915EPF bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF807MUK 895957440 ENCODE Processing Pipeline 7a7b988f59542bd129c8b6f2b0d9508b https://www.encodeproject.org/files/ENCFF915EPF/@@download/ENCFF915EPF.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF217LQZ bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 268184109 ENCODE Processing Pipeline 1395bf75aa4015cf2aac16ba06b9e412 https://www.encodeproject.org/files/ENCFF217LQZ/@@download/ENCFF217LQZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF247GGL bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 195102888 ENCODE Processing Pipeline 1a8b3792fdc64f28a37f8c4c0f73d007 https://www.encodeproject.org/files/ENCFF247GGL/@@download/ENCFF247GGL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF286BVW bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 211068500 ENCODE Processing Pipeline b8817e386e645d5c7347afed32cf18c0 https://www.encodeproject.org/files/ENCFF286BVW/@@download/ENCFF286BVW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF752LHH bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 359639676 ENCODE Processing Pipeline df1392acdba8b768d409afdac507b43a https://www.encodeproject.org/files/ENCFF752LHH/@@download/ENCFF752LHH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF499QLO bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF432WTX, ENCFF915EPF 537915536 ENCODE Processing Pipeline 16aaf92f0a43eb904cc53358db746489 https://www.encodeproject.org/files/ENCFF499QLO/@@download/ENCFF499QLO.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF387YIQ bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF248VST 10654885 ENCODE Processing Pipeline 8e5359e36a119e76e7c8dae1b6bda4aa https://www.encodeproject.org/files/ENCFF387YIQ/@@download/ENCFF387YIQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF248XJC bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF432WTX, ENCFF915EPF 195323599 ENCODE Processing Pipeline a94946ae2c9e64c2fb8f83bbb99dabe3 https://www.encodeproject.org/files/ENCFF248XJC/@@download/ENCFF248XJC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF702YUA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF382VEJ 1158324 ENCODE Processing Pipeline a678a50caabd3e4730b27cbb40e7ba9a https://www.encodeproject.org/files/ENCFF702YUA/@@download/ENCFF702YUA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF583XLS bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF432WTX, ENCFF915EPF 5378402 ENCODE Processing Pipeline 3ba7a14bbae178c463f5ccac34e83d08 https://www.encodeproject.org/files/ENCFF583XLS/@@download/ENCFF583XLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF578LBI bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF097DVZ 10416850 ENCODE Processing Pipeline 32fcd63bdf81c6b4e8bf814ced79b4ca https://www.encodeproject.org/files/ENCFF578LBI/@@download/ENCFF578LBI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF248VST bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 4743208 ENCODE Processing Pipeline 22f615319ddaccb9e66d6dc8fbccd389 https://www.encodeproject.org/files/ENCFF248VST/@@download/ENCFF248VST.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF382VEJ bed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF097DVZ, ENCFF248VST, ENCFF583XLS 580137 ENCODE Processing Pipeline aa232576bcd6911bf90c5ecad342a901 https://www.encodeproject.org/files/ENCFF382VEJ/@@download/ENCFF382VEJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF097DVZ bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 4691740 ENCODE Processing Pipeline 1deaf2fdf6bed5fd255130f05489b44f https://www.encodeproject.org/files/ENCFF097DVZ/@@download/ENCFF097DVZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF331YMJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF868VSY 1303930 ENCODE Processing Pipeline d5e7b708d115aecc327756a4d0b4a67d https://www.encodeproject.org/files/ENCFF331YMJ/@@download/ENCFF331YMJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF214IRZ bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF583XLS 11169162 ENCODE Processing Pipeline 727ce8596682423f46838ef8ebedf665 https://www.encodeproject.org/files/ENCFF214IRZ/@@download/ENCFF214IRZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF868VSY bed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF097DVZ, ENCFF248VST, ENCFF583XLS 673345 ENCODE Processing Pipeline f0b989cb4493c1a9afb342953149b247 https://www.encodeproject.org/files/ENCFF868VSY/@@download/ENCFF868VSY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF074YJO bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF340SPK, ENCFF746KYL 195446904 ENCODE Processing Pipeline 182f2f3ad5c4b46bf5ac0dced8a257d0 https://www.encodeproject.org/files/ENCFF074YJO/@@download/ENCFF074YJO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF239CXL bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF746KYL 351907159 ENCODE Processing Pipeline e7d955b69f3e5ac1976ec2c4be3afc60 https://www.encodeproject.org/files/ENCFF239CXL/@@download/ENCFF239CXL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF980RLN bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF914MKU 11172104 ENCODE Processing Pipeline b28a547fd7b4b25801c5039a917be731 https://www.encodeproject.org/files/ENCFF980RLN/@@download/ENCFF980RLN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF188AYL bed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF109XYU, ENCFF419RSJ, ENCFF898GZO, ENCFF914MKU 580678 ENCODE Processing Pipeline e2a750cdeaed950e8c95e8809a9d6ee2 https://www.encodeproject.org/files/ENCFF188AYL/@@download/ENCFF188AYL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF249SVT bed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF109XYU, ENCFF419RSJ, ENCFF898GZO, ENCFF914MKU 678438 ENCODE Processing Pipeline eb58314880ba52501ea3cb644dd1dc9a https://www.encodeproject.org/files/ENCFF249SVT/@@download/ENCFF249SVT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF170NTY bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF340SPK, ENCFF746KYL 537154554 ENCODE Processing Pipeline 610eb68f6161b847681ac51c44fd1214 https://www.encodeproject.org/files/ENCFF170NTY/@@download/ENCFF170NTY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF898GZO bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF746KYL 4753127 ENCODE Processing Pipeline fbcfacc9a255c288e8c7e1eded938918 https://www.encodeproject.org/files/ENCFF898GZO/@@download/ENCFF898GZO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF911NBR bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF109XYU 10408046 ENCODE Processing Pipeline 193d5e27d4a0b369cdc71001d1cdbf8d https://www.encodeproject.org/files/ENCFF911NBR/@@download/ENCFF911NBR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF055OSI bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF340SPK 195240875 ENCODE Processing Pipeline 8f5076f1248b733b4e385dedc44d4c2a https://www.encodeproject.org/files/ENCFF055OSI/@@download/ENCFF055OSI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF145WSG bigWig fold change over control ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF340SPK 265385436 ENCODE Processing Pipeline c8db11b0660f7ff5ded94b2e74a1ac07 https://www.encodeproject.org/files/ENCFF145WSG/@@download/ENCFF145WSG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF109XYU bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF340SPK 4683435 ENCODE Processing Pipeline 25c9d7219a4c7782f592f911ad7bda50 https://www.encodeproject.org/files/ENCFF109XYU/@@download/ENCFF109XYU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF406QGQ bigWig signal p-value ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF746KYL 211165413 ENCODE Processing Pipeline f1dbc239b38b16ced77e73c55c79ee7c https://www.encodeproject.org/files/ENCFF406QGQ/@@download/ENCFF406QGQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF914MKU bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF340SPK, ENCFF746KYL 5381805 ENCODE Processing Pipeline 37e23fd17639ffc95a395116f3d4b398 https://www.encodeproject.org/files/ENCFF914MKU/@@download/ENCFF914MKU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF830UHF bigBed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF898GZO 10657323 ENCODE Processing Pipeline 1ec64b8f5ccbff3129ae7fa944a20c3c https://www.encodeproject.org/files/ENCFF830UHF/@@download/ENCFF830UHF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF973MOA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF249SVT 1316039 ENCODE Processing Pipeline 1b45a4057c5860e828f1e09dc6a1a385 https://www.encodeproject.org/files/ENCFF973MOA/@@download/ENCFF973MOA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF282FSG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF188AYL 1162174 ENCODE Processing Pipeline 77bcf2ed223c96316eecd5f609ae4c4c https://www.encodeproject.org/files/ENCFF282FSG/@@download/ENCFF282FSG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF323BMQ bam unfiltered alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AWX, ENCFF807MUK 1761397733 ENCODE Processing Pipeline 28230c59d3717f899b99aab63133d0f7 https://www.encodeproject.org/files/ENCFF323BMQ/@@download/ENCFF323BMQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF026HEV bam unfiltered alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AUH, ENCFF807MUK 1334668683 ENCODE Processing Pipeline 2a2be2832b446f1a004b3d0f4447b6f3 https://www.encodeproject.org/files/ENCFF026HEV/@@download/ENCFF026HEV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF002AUH fastq reads ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 1 36 single-ended 1054708951 Bradley Bernstein, Broad ff85e23e9177b8c328e84a059ccd0dc3 SRA:SRR5833231 https://www.encodeproject.org/files/ENCFF002AUH/@@download/ENCFF002AUH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AXQ/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF002AWX fastq reads ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 1 36 single-ended 1460723587 Bradley Bernstein, Broad 7d234862d51a086b85911df513d972fd SRA:SRR5833232 https://www.encodeproject.org/files/ENCFF002AWX/@@download/ENCFF002AWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AYR/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF555IHR bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AWX, ENCFF807MUK 513809069 ENCODE Processing Pipeline 7c16da33417f478b4cadf8390108b380 https://www.encodeproject.org/files/ENCFF555IHR/@@download/ENCFF555IHR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF596CVC bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AUH, ENCFF807MUK 869035148 ENCODE Processing Pipeline e470ac55b418ad6da67ca8424c59614f https://www.encodeproject.org/files/ENCFF596CVC/@@download/ENCFF596CVC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF660VBK bam unfiltered alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AUH, ENCFF643CGH 1339687249 ENCODE Processing Pipeline e5723ca5d34abb09b7195c173a91b4f9 https://www.encodeproject.org/files/ENCFF660VBK/@@download/ENCFF660VBK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF806BAK bam unfiltered alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AWX, ENCFF643CGH 1768469422 ENCODE Processing Pipeline 565ec2a06c1d6177e6f6559bf307a269 https://www.encodeproject.org/files/ENCFF806BAK/@@download/ENCFF806BAK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF092CZO bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AUH, ENCFF643CGH 868581202 ENCODE Processing Pipeline e08c48e37c5e200b9d7a08deae3188cd https://www.encodeproject.org/files/ENCFF092CZO/@@download/ENCFF092CZO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF863PSQ bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AWX, ENCFF643CGH 513506594 ENCODE Processing Pipeline 8e1ed0f4b5774c82739d2b41077c2f36 https://www.encodeproject.org/files/ENCFF863PSQ/@@download/ENCFF863PSQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF195WBJ bigWig fold change over control ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF092CZO, ENCFF838RMJ 447795660 ENCODE Processing Pipeline 36a052acdbfbc21a649a2515f333501b https://www.encodeproject.org/files/ENCFF195WBJ/@@download/ENCFF195WBJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF272KEC bigWig signal p-value ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF631ENA, ENCFF863PSQ 360363488 ENCODE Processing Pipeline 293b4ce123aa4859c08d72b0fe3d6743 https://www.encodeproject.org/files/ENCFF272KEC/@@download/ENCFF272KEC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF506HPS bigWig signal p-value ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF092CZO, ENCFF838RMJ 484104671 ENCODE Processing Pipeline f66cb4766679179df5d4ed856edb95e6 https://www.encodeproject.org/files/ENCFF506HPS/@@download/ENCFF506HPS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF884IIL bigWig fold change over control ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF092CZO, ENCFF631ENA, ENCFF838RMJ, ENCFF863PSQ 830743018 ENCODE Processing Pipeline fb4f03211c0df765065c20620e6f03f2 https://www.encodeproject.org/files/ENCFF884IIL/@@download/ENCFF884IIL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF488ISB bigWig signal p-value ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF092CZO, ENCFF631ENA, ENCFF838RMJ, ENCFF863PSQ 792499041 ENCODE Processing Pipeline 46fc9b2d4c746317d6596b112e4c0bd4 https://www.encodeproject.org/files/ENCFF488ISB/@@download/ENCFF488ISB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF691NIP bigWig fold change over control ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF631ENA, ENCFF863PSQ 316079125 ENCODE Processing Pipeline fe86aff387328d614a4b2ca2ce3c17c3 https://www.encodeproject.org/files/ENCFF691NIP/@@download/ENCFF691NIP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF016SCI bigBed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF019JIE 13133151 ENCODE Processing Pipeline 7ceb920153355faf42957f6c8c9a8988 https://www.encodeproject.org/files/ENCFF016SCI/@@download/ENCFF016SCI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF991BYK bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF631ENA, ENCFF863PSQ 5309087 ENCODE Processing Pipeline c46f9417bf9f125a43237f15c8b67e09 https://www.encodeproject.org/files/ENCFF991BYK/@@download/ENCFF991BYK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF019JIE bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF092CZO, ENCFF838RMJ 5715915 ENCODE Processing Pipeline 6edfc81e704601bdf2792aded8fd38d1 https://www.encodeproject.org/files/ENCFF019JIE/@@download/ENCFF019JIE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF685JJH bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF092CZO, ENCFF631ENA, ENCFF838RMJ, ENCFF863PSQ 6486853 ENCODE Processing Pipeline 211c3be4c55d410ce354b7b558434d8d https://www.encodeproject.org/files/ENCFF685JJH/@@download/ENCFF685JJH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF290WAL bigBed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF991BYK 13079210 ENCODE Processing Pipeline d99b2bf08b12ced6323a8b9700312010 https://www.encodeproject.org/files/ENCFF290WAL/@@download/ENCFF290WAL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF293GXD bigBed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF685JJH 13276413 ENCODE Processing Pipeline 1e55b1c2a2c8d5f6f8baec21508315a1 https://www.encodeproject.org/files/ENCFF293GXD/@@download/ENCFF293GXD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF837RIT bed narrowPeak optimal idr thresholded peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF019JIE, ENCFF419RSJ, ENCFF685JJH, ENCFF991BYK 1048700 ENCODE Processing Pipeline 1a3d207c16b079672b6b9281ef55d4bd https://www.encodeproject.org/files/ENCFF837RIT/@@download/ENCFF837RIT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF603BFC bigBed narrowPeak optimal idr thresholded peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF837RIT 1955778 ENCODE Processing Pipeline bb0b8f27cde09cf7d2e99eecdca1a2ca https://www.encodeproject.org/files/ENCFF603BFC/@@download/ENCFF603BFC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF626JFA bigWig signal p-value ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF548ADC, ENCFF555IHR 456040289 ENCODE Processing Pipeline a897ace9c333322b4ce2696af1ae53e1 https://www.encodeproject.org/files/ENCFF626JFA/@@download/ENCFF626JFA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF199OWG bigWig signal p-value ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF596CVC, ENCFF815IAY 507007598 ENCODE Processing Pipeline ca6e140745a83bd19adc598d4bbe7762 https://www.encodeproject.org/files/ENCFF199OWG/@@download/ENCFF199OWG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF121ZFP bigWig signal p-value ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF548ADC, ENCFF555IHR, ENCFF596CVC, ENCFF815IAY 936583962 ENCODE Processing Pipeline 2b11be051799b9fcf95bf739f1e40fa9 https://www.encodeproject.org/files/ENCFF121ZFP/@@download/ENCFF121ZFP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF879YLC bigWig fold change over control ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF548ADC, ENCFF555IHR 312762928 ENCODE Processing Pipeline a9e5119397c6dfa2649a054c8b7c6103 https://www.encodeproject.org/files/ENCFF879YLC/@@download/ENCFF879YLC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF684OGR bigWig fold change over control ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF596CVC, ENCFF815IAY 445920630 ENCODE Processing Pipeline b353eac9333e927b5ae24f0ee455e108 https://www.encodeproject.org/files/ENCFF684OGR/@@download/ENCFF684OGR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF287ALH bigWig fold change over control ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF548ADC, ENCFF555IHR, ENCFF596CVC, ENCFF815IAY 834202354 ENCODE Processing Pipeline cf9f45c32c29742ed56ae12368256642 https://www.encodeproject.org/files/ENCFF287ALH/@@download/ENCFF287ALH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF459CAS bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF548ADC, ENCFF555IHR 5342620 ENCODE Processing Pipeline f5df4923584165f94918c3d895af839e https://www.encodeproject.org/files/ENCFF459CAS/@@download/ENCFF459CAS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF268CZL bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF596CVC, ENCFF815IAY 5807811 ENCODE Processing Pipeline 7c1eed46b0949017e679dddb6d549375 https://www.encodeproject.org/files/ENCFF268CZL/@@download/ENCFF268CZL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF824YYD bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF548ADC, ENCFF555IHR, ENCFF596CVC, ENCFF815IAY 6544148 ENCODE Processing Pipeline b0d0ba90bfecd62ef3d2426ba4026301 https://www.encodeproject.org/files/ENCFF824YYD/@@download/ENCFF824YYD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF202LTW bigBed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF459CAS 13120805 ENCODE Processing Pipeline 452beb1fdd33029b159d97b6a77317b6 https://www.encodeproject.org/files/ENCFF202LTW/@@download/ENCFF202LTW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF679WDM bigBed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF268CZL 13206202 ENCODE Processing Pipeline e3926bc21aaa61eab70b6c7d965aa61b https://www.encodeproject.org/files/ENCFF679WDM/@@download/ENCFF679WDM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF933AVW bigBed narrowPeak optimal idr thresholded peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF421PBO 1965097 ENCODE Processing Pipeline 7be0a1a17713a47b3e9a91ae556bd8d0 https://www.encodeproject.org/files/ENCFF933AVW/@@download/ENCFF933AVW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF628PUL bigBed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF824YYD 13349140 ENCODE Processing Pipeline f4b386be7b3a2245ecf6ea282a601d58 https://www.encodeproject.org/files/ENCFF628PUL/@@download/ENCFF628PUL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF421PBO bed narrowPeak optimal idr thresholded peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF001TDO, ENCFF268CZL, ENCFF459CAS, ENCFF824YYD 1053984 ENCODE Processing Pipeline d43f7f5ed061c81af73fc2007fc4995e https://www.encodeproject.org/files/ENCFF421PBO/@@download/ENCFF421PBO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF384DGC fastq reads ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF445QWT 4438493245 Michael Snyder, Stanford 1a5aea4c4c2549b36870bcc71e6cd78e SRA:SRR6213597 https://www.encodeproject.org/files/ENCFF384DGC/@@download/ENCFF384DGC.fastq.gz Illumina HiSeq 4000 /files/ENCFF896VYC/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF445QWT fastq reads ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF384DGC 4226220412 Michael Snyder, Stanford 53961abfe2a6368a0cb65a1cf9a25377 SRA:SRR6213597 https://www.encodeproject.org/files/ENCFF445QWT/@@download/ENCFF445QWT.fastq.gz Illumina HiSeq 4000 /files/ENCFF723TPE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF797CJA bam unfiltered alignments ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF384DGC, ENCFF445QWT, ENCFF643CGH 7677207167 ENCODE Processing Pipeline e690ecf39a9939712fdcfe00710dda6a https://www.encodeproject.org/files/ENCFF797CJA/@@download/ENCFF797CJA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF896XUK bam unfiltered alignments ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF384DGC, ENCFF445QWT, ENCFF807MUK 7678199695 ENCODE Processing Pipeline 5c8cfd42bfe0f6421dac7b6ebb91be01 https://www.encodeproject.org/files/ENCFF896XUK/@@download/ENCFF896XUK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF340HRS bam alignments ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF384DGC, ENCFF445QWT, ENCFF643CGH 4280118751 ENCODE Processing Pipeline 001acfab08a77b0ef79553875a0cf545 https://www.encodeproject.org/files/ENCFF340HRS/@@download/ENCFF340HRS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF088BUC bam alignments ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF384DGC, ENCFF445QWT, ENCFF807MUK 4272732409 ENCODE Processing Pipeline 152d64187edcd98ed24f38c360cdd7b6 https://www.encodeproject.org/files/ENCFF088BUC/@@download/ENCFF088BUC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF412AQV bigWig signal p-value ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF340HRS, ENCFF602FBL 1443073432 ENCODE Processing Pipeline d31fbd8d7dd612bf06d1a84c89ad9056 https://www.encodeproject.org/files/ENCFF412AQV/@@download/ENCFF412AQV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF067BYK bed narrowPeak peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF340HRS, ENCFF602FBL 7001245 ENCODE Processing Pipeline 997e8dd0f449a9fb35c20d7ca8faa4ec https://www.encodeproject.org/files/ENCFF067BYK/@@download/ENCFF067BYK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF987MHV bigBed narrowPeak peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF067BYK 13032439 ENCODE Processing Pipeline 815af643adfc2c63c94031a95334f2f2 https://www.encodeproject.org/files/ENCFF987MHV/@@download/ENCFF987MHV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF228NVN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF067BYK, ENCFF419RSJ 551866 ENCODE Processing Pipeline 3e193fb515f6340bf8c803d562ed1e86 https://www.encodeproject.org/files/ENCFF228NVN/@@download/ENCFF228NVN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF017OEI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF228NVN 1252508 ENCODE Processing Pipeline 780790a71bc43d22d520b7b7be8d7fb4 https://www.encodeproject.org/files/ENCFF017OEI/@@download/ENCFF017OEI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF502AUB bigWig fold change over control ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF340HRS, ENCFF602FBL 1451425839 ENCODE Processing Pipeline cd4263efcdce08cd925ae8c37bcc4253 https://www.encodeproject.org/files/ENCFF502AUB/@@download/ENCFF502AUB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF942IUI bigWig signal p-value ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF088BUC, ENCFF908GSJ 1442918471 ENCODE Processing Pipeline b64d60f01e46a8271c79963ddd834dac https://www.encodeproject.org/files/ENCFF942IUI/@@download/ENCFF942IUI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF911TTD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF717YOR 557820 ENCODE Processing Pipeline 008a5aac86ad8bfa106b69796d9b687e https://www.encodeproject.org/files/ENCFF911TTD/@@download/ENCFF911TTD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF488KWK bigWig fold change over control ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF088BUC, ENCFF908GSJ 1430688465 ENCODE Processing Pipeline 000c3fc428e7dced094e790ac57c61bb https://www.encodeproject.org/files/ENCFF488KWK/@@download/ENCFF488KWK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF717YOR bed narrowPeak peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF088BUC, ENCFF908GSJ 7021193 ENCODE Processing Pipeline e8c0e0e021ab3b49f4da3134551cfda5 https://www.encodeproject.org/files/ENCFF717YOR/@@download/ENCFF717YOR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF695FQF bigBed narrowPeak peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF717YOR 13049339 ENCODE Processing Pipeline 50dc3bd3524175db7d6f4db816c0c47e https://www.encodeproject.org/files/ENCFF695FQF/@@download/ENCFF695FQF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF417YCB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF911TTD 1259769 ENCODE Processing Pipeline db545fda2b6942b39cb4d677b0335944 https://www.encodeproject.org/files/ENCFF417YCB/@@download/ENCFF417YCB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF615SOF fastq reads ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 1 100 paired-ended 1 ENCFF656UEH 3290865264 Michael Snyder, Stanford 0e8855a3e0f4727fe70de4dff17e674b SRA:SRR6213609 https://www.encodeproject.org/files/ENCFF615SOF/@@download/ENCFF615SOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released mild to moderate bottlenecking, low read depth ENCFF268JOY fastq reads ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 1 100 paired-ended 2 ENCFF935GDU 2913537991 Michael Snyder, Stanford 22c7807770b1e3fd4cba322a5cb65690 SRA:SRR6213608 https://www.encodeproject.org/files/ENCFF268JOY/@@download/ENCFF268JOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released mild to moderate bottlenecking, low read depth ENCFF656UEH fastq reads ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 1 100 paired-ended 2 ENCFF615SOF 3508990409 Michael Snyder, Stanford 356d9b9d5eb7afeb6f445c3406b0b0eb SRA:SRR6213609 https://www.encodeproject.org/files/ENCFF656UEH/@@download/ENCFF656UEH.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released mild to moderate bottlenecking, low read depth ENCFF935GDU fastq reads ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 1 100 paired-ended 1 ENCFF268JOY 2793274381 Michael Snyder, Stanford 6e674c92f3eed3f641966148f222afdb SRA:SRR6213608 https://www.encodeproject.org/files/ENCFF935GDU/@@download/ENCFF935GDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released mild to moderate bottlenecking, low read depth ENCFF003UGN bam unfiltered alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 100 ENCFF615SOF, ENCFF656UEH, ENCFF807MUK 6404842039 ENCODE Processing Pipeline e0f8a6f3d37d8f834cb50d281e0ca236 https://www.encodeproject.org/files/ENCFF003UGN/@@download/ENCFF003UGN.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF637PNR bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 100 ENCFF268JOY, ENCFF807MUK, ENCFF935GDU 3731919249 ENCODE Processing Pipeline a46d5faf54276324a80a93dc8cb45b9b https://www.encodeproject.org/files/ENCFF637PNR/@@download/ENCFF637PNR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF023AOR bam unfiltered alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 100 ENCFF268JOY, ENCFF643CGH, ENCFF935GDU 5479143820 ENCODE Processing Pipeline 4ef36bd10bf872636d4ae0f85360a6b3 https://www.encodeproject.org/files/ENCFF023AOR/@@download/ENCFF023AOR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF459MNI bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 100 ENCFF268JOY, ENCFF643CGH, ENCFF935GDU 3732395970 ENCODE Processing Pipeline 03c54338d5cc2afc578eae917b0fe13b https://www.encodeproject.org/files/ENCFF459MNI/@@download/ENCFF459MNI.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF692TUA bam unfiltered alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 100 ENCFF268JOY, ENCFF807MUK, ENCFF935GDU 5477682748 ENCODE Processing Pipeline e69a3210c5f169aaa6d62652dc1413ef https://www.encodeproject.org/files/ENCFF692TUA/@@download/ENCFF692TUA.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF621VLS bam unfiltered alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 100 ENCFF615SOF, ENCFF643CGH, ENCFF656UEH 6405003827 ENCODE Processing Pipeline 54482e785e441bdb45a430594f48ce1e https://www.encodeproject.org/files/ENCFF621VLS/@@download/ENCFF621VLS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF706XFF bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 100 ENCFF615SOF, ENCFF643CGH, ENCFF656UEH 3511182038 ENCODE Processing Pipeline 2ed5208dc0128e5916a3ee9565c92d4d https://www.encodeproject.org/files/ENCFF706XFF/@@download/ENCFF706XFF.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF594JBQ bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 100 ENCFF615SOF, ENCFF656UEH, ENCFF807MUK 3511379072 ENCODE Processing Pipeline 3f3c390476f41b44b047fabfa7f3cff8 https://www.encodeproject.org/files/ENCFF594JBQ/@@download/ENCFF594JBQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF651NGP bigWig fold change over control ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ 1120970348 ENCODE Processing Pipeline 5d5a3e3eaffef10ffb28fe679eb8d6cc https://www.encodeproject.org/files/ENCFF651NGP/@@download/ENCFF651NGP.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF634SVO bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF637PNR 6429786 ENCODE Processing Pipeline e0d3f9a83e1cb435065912e0a3b08a02 https://www.encodeproject.org/files/ENCFF634SVO/@@download/ENCFF634SVO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF197MJO bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ 5923774 ENCODE Processing Pipeline 121bb1bdc84e093168dc663ffbb01560 https://www.encodeproject.org/files/ENCFF197MJO/@@download/ENCFF197MJO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF420RMA bigBed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF197MJO 11381488 ENCODE Processing Pipeline c4efd649e246f8b20d36f3769be232cd https://www.encodeproject.org/files/ENCFF420RMA/@@download/ENCFF420RMA.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF359SHT bigWig signal p-value ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ, ENCFF637PNR 1556849531 ENCODE Processing Pipeline 4b80e168b6700e99211003b2553c340b https://www.encodeproject.org/files/ENCFF359SHT/@@download/ENCFF359SHT.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF400NKF bed narrowPeak conservative idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF001TDO, ENCFF197MJO, ENCFF634SVO, ENCFF801LNJ 395202 ENCODE Processing Pipeline ab7de6bb6896665b52f6e4f3189cfb79 https://www.encodeproject.org/files/ENCFF400NKF/@@download/ENCFF400NKF.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF020FEG bigWig signal p-value ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ 1073559165 ENCODE Processing Pipeline d2ceba60dd94df23027a03c3ac5acec4 https://www.encodeproject.org/files/ENCFF020FEG/@@download/ENCFF020FEG.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF132EQK bigBed narrowPeak conservative idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF400NKF 848492 ENCODE Processing Pipeline 0eb8a6155d2971b609a026eff626497e https://www.encodeproject.org/files/ENCFF132EQK/@@download/ENCFF132EQK.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF975IRM bed narrowPeak optimal idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF001TDO, ENCFF197MJO, ENCFF634SVO, ENCFF801LNJ 469880 ENCODE Processing Pipeline 36677304d38b5f80815daf0f71286681 https://www.encodeproject.org/files/ENCFF975IRM/@@download/ENCFF975IRM.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF328QZM bed narrowPeak optimal idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF036GCO, ENCFF115DWC, ENCFF419RSJ, ENCFF651LFT 472665 ENCODE Processing Pipeline a03eb83debb7f343eca8e52bf576135f https://www.encodeproject.org/files/ENCFF328QZM/@@download/ENCFF328QZM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF043GKY bigWig signal p-value ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF637PNR 1311430266 ENCODE Processing Pipeline 1da63ed0c2298b143ef6079f0f8628e1 https://www.encodeproject.org/files/ENCFF043GKY/@@download/ENCFF043GKY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF676BPY bigWig fold change over control ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF637PNR 1182882432 ENCODE Processing Pipeline 42c52a1837185ab571d4b6b1693e47b8 https://www.encodeproject.org/files/ENCFF676BPY/@@download/ENCFF676BPY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF989VKY bigWig fold change over control ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ, ENCFF637PNR 1697752046 ENCODE Processing Pipeline 81d7b48595b50d216b26a231f666d86b https://www.encodeproject.org/files/ENCFF989VKY/@@download/ENCFF989VKY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF801LNJ bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ, ENCFF637PNR 7009580 ENCODE Processing Pipeline b57ed07d810b8a2fde28215fecfdd12b https://www.encodeproject.org/files/ENCFF801LNJ/@@download/ENCFF801LNJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF456QKB bigBed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF634SVO 13391774 ENCODE Processing Pipeline f5a202b8634c720ab6ad59b9cf0a9556 https://www.encodeproject.org/files/ENCFF456QKB/@@download/ENCFF456QKB.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF944SUN bigBed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF801LNJ 13262850 ENCODE Processing Pipeline ecce0195f2a05babb029758ec69fdd7a https://www.encodeproject.org/files/ENCFF944SUN/@@download/ENCFF944SUN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF068OGU bigBed narrowPeak optimal idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF975IRM 971631 ENCODE Processing Pipeline e86acf5f0abe949a017dbdaff76a553d https://www.encodeproject.org/files/ENCFF068OGU/@@download/ENCFF068OGU.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF940IER bigWig signal p-value ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF459MNI, ENCFF706XFF, ENCFF720AUK, ENCFF796JTX 1646904856 ENCODE Processing Pipeline c415ffa3035ac211626d2db7c0700e23 https://www.encodeproject.org/files/ENCFF940IER/@@download/ENCFF940IER.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF169OTC bigWig fold change over control ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF459MNI, ENCFF706XFF, ENCFF720AUK, ENCFF796JTX 1719002893 ENCODE Processing Pipeline 23b7323c8ea92d36c681adcea4135b5f https://www.encodeproject.org/files/ENCFF169OTC/@@download/ENCFF169OTC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF456ZUZ bigWig fold change over control ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF459MNI, ENCFF720AUK, ENCFF796JTX 1185754656 ENCODE Processing Pipeline 9418a23b3345c38688ba283f15bc16cf https://www.encodeproject.org/files/ENCFF456ZUZ/@@download/ENCFF456ZUZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF036GCO bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF706XFF, ENCFF720AUK, ENCFF796JTX 5929424 ENCODE Processing Pipeline 58be04e03165c4566bde3eea49f1d475 https://www.encodeproject.org/files/ENCFF036GCO/@@download/ENCFF036GCO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF651LFT bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF459MNI, ENCFF720AUK, ENCFF796JTX 6432840 ENCODE Processing Pipeline a651a82f989ca268b25ebbb200137b0f https://www.encodeproject.org/files/ENCFF651LFT/@@download/ENCFF651LFT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF115DWC bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF459MNI, ENCFF706XFF, ENCFF720AUK, ENCFF796JTX 7015551 ENCODE Processing Pipeline 9a28e354d7e74c16028201b4f9c6f099 https://www.encodeproject.org/files/ENCFF115DWC/@@download/ENCFF115DWC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF751TCJ bigBed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF036GCO 11402275 ENCODE Processing Pipeline c4719f2bce214f9b4497b6022a9124ae https://www.encodeproject.org/files/ENCFF751TCJ/@@download/ENCFF751TCJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF944ZFL bigWig signal p-value ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF459MNI, ENCFF720AUK, ENCFF796JTX 1304560103 ENCODE Processing Pipeline ea6bdb1537d035f1f25a63d52e6918fe https://www.encodeproject.org/files/ENCFF944ZFL/@@download/ENCFF944ZFL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF188HKC bigWig signal p-value ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF706XFF, ENCFF720AUK, ENCFF796JTX 1176156755 ENCODE Processing Pipeline beb41a8248562fd1411e7c0d11e038d0 https://www.encodeproject.org/files/ENCFF188HKC/@@download/ENCFF188HKC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF675CXL bigWig fold change over control ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 ENCFF706XFF, ENCFF720AUK, ENCFF796JTX 1122887072 ENCODE Processing Pipeline 55f0e8fdca37e20340ab694ef96dc316 https://www.encodeproject.org/files/ENCFF675CXL/@@download/ENCFF675CXL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF124NBN bed narrowPeak conservative idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF036GCO, ENCFF115DWC, ENCFF419RSJ, ENCFF651LFT 395542 ENCODE Processing Pipeline 342c028380b0ae5e674af8f89e26a152 https://www.encodeproject.org/files/ENCFF124NBN/@@download/ENCFF124NBN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF204ALA bigBed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF115DWC 13278055 ENCODE Processing Pipeline 71c081031045e514f90ed9f19dd62ba1 https://www.encodeproject.org/files/ENCFF204ALA/@@download/ENCFF204ALA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF903SWK bigBed narrowPeak conservative idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF124NBN 851424 ENCODE Processing Pipeline 064a18469d9a1f758e09b2ce8b47ef78 https://www.encodeproject.org/files/ENCFF903SWK/@@download/ENCFF903SWK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF625JCE bigBed narrowPeak optimal idr thresholded peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3, 4 ENCFF328QZM 977878 ENCODE Processing Pipeline e1984458609bf8debb23dc3ea24fd2e3 https://www.encodeproject.org/files/ENCFF625JCE/@@download/ENCFF625JCE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF595MNU bigBed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 ENCFF651LFT 13407510 ENCODE Processing Pipeline bbe6615b1a162f1dd7c18f14ba3d0a50 https://www.encodeproject.org/files/ENCFF595MNU/@@download/ENCFF595MNU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF837RUP fastq reads ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 36 single-ended 2657310892 Bradley Bernstein, Broad 84e6da5eed71f8bce1e4b2ee80162254 https://www.encodeproject.org/files/ENCFF837RUP/@@download/ENCFF837RUP.fastq.gz Illumina HiSeq 2500 /files/ENCFF349YSG/, /files/ENCFF775RGK/, /files/ENCFF829PCB/ released low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF043VXL fastq reads ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 2 36 single-ended 2607208400 Bradley Bernstein, Broad fde32c6649e384ea2b729e50da581791 https://www.encodeproject.org/files/ENCFF043VXL/@@download/ENCFF043VXL.fastq.gz Illumina HiSeq 2500 /files/ENCFF349YSG/, /files/ENCFF775RGK/, /files/ENCFF829PCB/ released low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF845BWF bam alignments ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF043VXL, ENCFF807MUK, ENCFF837RUP 4031467848 ENCODE Processing Pipeline ff82c9896e9d462e8a778aa47cb826a4 https://www.encodeproject.org/files/ENCFF845BWF/@@download/ENCFF845BWF.bam hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF893MIS bam unfiltered alignments ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF043VXL, ENCFF807MUK, ENCFF837RUP 6406835877 ENCODE Processing Pipeline 157bc59f2ba502d1633d7f1dfe62352c https://www.encodeproject.org/files/ENCFF893MIS/@@download/ENCFF893MIS.bam hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF651ORM bam unfiltered alignments ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF043VXL, ENCFF643CGH, ENCFF837RUP 6439581953 ENCODE Processing Pipeline 5d5fe2f3e9a36bfa9bb5020c8d56e423 https://www.encodeproject.org/files/ENCFF651ORM/@@download/ENCFF651ORM.bam GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF022UTU bam alignments ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF043VXL, ENCFF643CGH, ENCFF837RUP 4030714108 ENCODE Processing Pipeline 1eee205813f109b4e1af912a1a9ca097 https://www.encodeproject.org/files/ENCFF022UTU/@@download/ENCFF022UTU.bam GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF299FOE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF001TDO, ENCFF805GLK 73059 ENCODE Processing Pipeline d5d217a69b369ef28a0beb7a7299eaf3 https://www.encodeproject.org/files/ENCFF299FOE/@@download/ENCFF299FOE.bed.gz hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF145UTM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF299FOE 233274 ENCODE Processing Pipeline 84e4b93b1c40bb9d8b9a6a623815070f https://www.encodeproject.org/files/ENCFF145UTM/@@download/ENCFF145UTM.bigBed hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF010YDQ bigWig signal p-value ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF112OEB, ENCFF845BWF 984521466 ENCODE Processing Pipeline 8c2e89788e93b3e15a14ef792eca14c7 https://www.encodeproject.org/files/ENCFF010YDQ/@@download/ENCFF010YDQ.bigWig hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF281KAT bigWig fold change over control ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF112OEB, ENCFF845BWF 1468439014 ENCODE Processing Pipeline 718b8c4b6f8ccab40e7e192badc03e11 https://www.encodeproject.org/files/ENCFF281KAT/@@download/ENCFF281KAT.bigWig hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF805GLK bed narrowPeak peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF112OEB, ENCFF845BWF 7288365 ENCODE Processing Pipeline 6af28e9ce041e7a432a569fc7f4b5df3 https://www.encodeproject.org/files/ENCFF805GLK/@@download/ENCFF805GLK.bed.gz hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF791NFG bigBed narrowPeak peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF805GLK 12857741 ENCODE Processing Pipeline eb68d8b7971b512d78b67aa9e935f8c2 https://www.encodeproject.org/files/ENCFF791NFG/@@download/ENCFF791NFG.bigBed hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF786XFB bigWig signal p-value ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF022UTU, ENCFF630PML 981521901 ENCODE Processing Pipeline b995e32dcaf8a0922851712c928134fe https://www.encodeproject.org/files/ENCFF786XFB/@@download/ENCFF786XFB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF884ZRE bigWig fold change over control ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF022UTU, ENCFF630PML 1463757105 ENCODE Processing Pipeline 4e96413000f10fd7d3176f8771ff7439 https://www.encodeproject.org/files/ENCFF884ZRE/@@download/ENCFF884ZRE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF528OKE bed narrowPeak peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF022UTU, ENCFF630PML 7283872 ENCODE Processing Pipeline eccb01f75deea7194d8d779d8d06b9ee https://www.encodeproject.org/files/ENCFF528OKE/@@download/ENCFF528OKE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF189IWS bigBed narrowPeak peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF528OKE 12880484 ENCODE Processing Pipeline 7d140cff91f306859dfeb5bfcda0d133 https://www.encodeproject.org/files/ENCFF189IWS/@@download/ENCFF189IWS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF702LEL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF419RSJ, ENCFF528OKE 69070 ENCODE Processing Pipeline d524c8e0fc6cecc80916077cfae2f25f https://www.encodeproject.org/files/ENCFF702LEL/@@download/ENCFF702LEL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF942BGD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF702LEL 224403 ENCODE Processing Pipeline b3676c74ed76d108707476ca7136e3fc https://www.encodeproject.org/files/ENCFF942BGD/@@download/ENCFF942BGD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF002EVS fastq reads ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 1 36 single-ended 804541550 Michael Snyder, Stanford 2a95665bc5efac32ae2edfccb9db83c7 SRA:SRR5112312 https://www.encodeproject.org/files/ENCFF002EVS/@@download/ENCFF002EVS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF492DKQ/ released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF002EVW fastq reads ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 1 36 single-ended 1055062971 Michael Snyder, Stanford 4b340e69edcf2d7cfb052f594f981636 SRA:SRR5112311 https://www.encodeproject.org/files/ENCFF002EVW/@@download/ENCFF002EVW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF584LXI/ released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF198MNU bam unfiltered alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVS, ENCFF643CGH 1129458410 ENCODE Processing Pipeline a11ed40393a86b20a98633f9e0e1ab3f https://www.encodeproject.org/files/ENCFF198MNU/@@download/ENCFF198MNU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF953OAD bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVS, ENCFF643CGH 742065457 ENCODE Processing Pipeline 98942f0a15c0bb5dd857d95be3ae1535 https://www.encodeproject.org/files/ENCFF953OAD/@@download/ENCFF953OAD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF551QAX bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVW, ENCFF643CGH 848027264 ENCODE Processing Pipeline 417a0c8c7c44ec6d616e768d37d041ea https://www.encodeproject.org/files/ENCFF551QAX/@@download/ENCFF551QAX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF881NXB bam unfiltered alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVS, ENCFF807MUK 1124040780 ENCODE Processing Pipeline f036db8f283a51fb44bd77d08f819412 https://www.encodeproject.org/files/ENCFF881NXB/@@download/ENCFF881NXB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF722VQE bam unfiltered alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVW, ENCFF643CGH 1418738809 ENCODE Processing Pipeline d6c1c0d1825bc485aa2b72ca90b23a2c https://www.encodeproject.org/files/ENCFF722VQE/@@download/ENCFF722VQE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF390ZHN bam unfiltered alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVW, ENCFF807MUK 1411991651 ENCODE Processing Pipeline 554a58cf52ec9a63aefeb42e644365a0 https://www.encodeproject.org/files/ENCFF390ZHN/@@download/ENCFF390ZHN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF860FLL bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVS, ENCFF807MUK 742489020 ENCODE Processing Pipeline 201cca8ea9e86ce5d4f0a2320faebc01 https://www.encodeproject.org/files/ENCFF860FLL/@@download/ENCFF860FLL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF908WOK bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVW, ENCFF807MUK 848458869 ENCODE Processing Pipeline f48eb83504eb2f5dc38d2a51e15641bc https://www.encodeproject.org/files/ENCFF908WOK/@@download/ENCFF908WOK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF301PCR bigWig signal p-value ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF860FLL 503954949 ENCODE Processing Pipeline b985a90e3ff8e14c1da88d7458f6b3a3 https://www.encodeproject.org/files/ENCFF301PCR/@@download/ENCFF301PCR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF188VNB bigWig signal p-value ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF880YHS, ENCFF908WOK 620495925 ENCODE Processing Pipeline 2d39b7b5261a4814933a4794356c4d7d https://www.encodeproject.org/files/ENCFF188VNB/@@download/ENCFF188VNB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF429WGS bigWig signal p-value ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF485QJI, ENCFF860FLL, ENCFF880YHS, ENCFF908WOK 1012661778 ENCODE Processing Pipeline 5decefb73c9ffffb02a43b993fedf36b https://www.encodeproject.org/files/ENCFF429WGS/@@download/ENCFF429WGS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF081ZZN bigWig fold change over control ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF880YHS, ENCFF908WOK 446237784 ENCODE Processing Pipeline 1612260b645e013d37eeaaeb8ba0affc https://www.encodeproject.org/files/ENCFF081ZZN/@@download/ENCFF081ZZN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF414HDE bigWig fold change over control ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF860FLL 467975355 ENCODE Processing Pipeline 801aa0054b3686e0fffb1e7d33f06fb1 https://www.encodeproject.org/files/ENCFF414HDE/@@download/ENCFF414HDE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF654GSX bigWig fold change over control ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF485QJI, ENCFF860FLL, ENCFF880YHS, ENCFF908WOK 1028202546 ENCODE Processing Pipeline 8acea60f498f5be73e79ab7f744b829a https://www.encodeproject.org/files/ENCFF654GSX/@@download/ENCFF654GSX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF940YUU bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF880YHS, ENCFF908WOK 4968280 ENCODE Processing Pipeline d080f2ccbe78c1f590ac6e61bbf7cb42 https://www.encodeproject.org/files/ENCFF940YUU/@@download/ENCFF940YUU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF619TUA bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF860FLL 5105454 ENCODE Processing Pipeline ff2f7ce9a1d94163fe261f3fcffe81c4 https://www.encodeproject.org/files/ENCFF619TUA/@@download/ENCFF619TUA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF463QTS bigBed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF940YUU 11136617 ENCODE Processing Pipeline da211b1f4915cbee43a5e0ea719b023e https://www.encodeproject.org/files/ENCFF463QTS/@@download/ENCFF463QTS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF744IKA bigBed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF619TUA 11231805 ENCODE Processing Pipeline 4f718cf99b66ca4f2d68dac953894ee9 https://www.encodeproject.org/files/ENCFF744IKA/@@download/ENCFF744IKA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF088IEB bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF485QJI, ENCFF860FLL, ENCFF880YHS, ENCFF908WOK 6190948 ENCODE Processing Pipeline 0b6fa9195aa58d509cef914daa9303d2 https://www.encodeproject.org/files/ENCFF088IEB/@@download/ENCFF088IEB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF930TBZ bigBed narrowPeak conservative idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF039HQG 657056 ENCODE Processing Pipeline c2d3cb095565906f1b15909e6d4565cb https://www.encodeproject.org/files/ENCFF930TBZ/@@download/ENCFF930TBZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF942FBW bed narrowPeak optimal idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF088IEB, ENCFF619TUA, ENCFF940YUU 463177 ENCODE Processing Pipeline e4cca3a1db075fe4246889df1b37db5f https://www.encodeproject.org/files/ENCFF942FBW/@@download/ENCFF942FBW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF671IOA bigBed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF088IEB 11490348 ENCODE Processing Pipeline fe041dfca0a39c08c14133cb0896997e https://www.encodeproject.org/files/ENCFF671IOA/@@download/ENCFF671IOA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF039HQG bed narrowPeak conservative idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF088IEB, ENCFF619TUA, ENCFF940YUU 333802 ENCODE Processing Pipeline 7092b03db17b1bfe20458ac90e3cf536 https://www.encodeproject.org/files/ENCFF039HQG/@@download/ENCFF039HQG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF473WDU bigBed narrowPeak optimal idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF942FBW 829276 ENCODE Processing Pipeline b052ddcc0126a60539130c0a20b27a7e https://www.encodeproject.org/files/ENCFF473WDU/@@download/ENCFF473WDU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF587CCD bigWig signal p-value ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF928IDQ, ENCFF953OAD 504020620 ENCODE Processing Pipeline c1c2a0ec93b19181e628a11266cc6a10 https://www.encodeproject.org/files/ENCFF587CCD/@@download/ENCFF587CCD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF932LLN bigWig signal p-value ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF195PNZ, ENCFF551QAX 531437053 ENCODE Processing Pipeline a0a8a2e32a15fea67b0ddf0f2ec61935 https://www.encodeproject.org/files/ENCFF932LLN/@@download/ENCFF932LLN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF725NAL bigWig signal p-value ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF195PNZ, ENCFF551QAX, ENCFF928IDQ, ENCFF953OAD 1220141304 ENCODE Processing Pipeline 870227c0102e9c04621f093bd3b0f3cf https://www.encodeproject.org/files/ENCFF725NAL/@@download/ENCFF725NAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF790SOG bigWig fold change over control ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF195PNZ, ENCFF551QAX 446529539 ENCODE Processing Pipeline a52b51d4d16a09ff260fef95d5df6d41 https://www.encodeproject.org/files/ENCFF790SOG/@@download/ENCFF790SOG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF256VCJ bigWig fold change over control ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF928IDQ, ENCFF953OAD 468169506 ENCODE Processing Pipeline fe78b27e068721062d05b9d78274b22c https://www.encodeproject.org/files/ENCFF256VCJ/@@download/ENCFF256VCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF719QJW bigBed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF121VNB 10993537 ENCODE Processing Pipeline 2046f460f8fa3a5ccdc045c79a25f132 https://www.encodeproject.org/files/ENCFF719QJW/@@download/ENCFF719QJW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF121VNB bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF195PNZ, ENCFF551QAX 4821258 ENCODE Processing Pipeline cc3c12e10db2506b5beef74b921a7030 https://www.encodeproject.org/files/ENCFF121VNB/@@download/ENCFF121VNB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF651HLI bigBed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF454JIO 11132596 ENCODE Processing Pipeline a5cd01dfedad276e2696d6946df8ae22 https://www.encodeproject.org/files/ENCFF651HLI/@@download/ENCFF651HLI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF005JHG bigWig fold change over control ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF195PNZ, ENCFF551QAX, ENCFF928IDQ, ENCFF953OAD 1024237313 ENCODE Processing Pipeline 3547108dd10d1205d4de56209d05a5b3 https://www.encodeproject.org/files/ENCFF005JHG/@@download/ENCFF005JHG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF455DUW bed narrowPeak conservative idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF121VNB, ENCFF419RSJ, ENCFF454JIO, ENCFF582PJO 334282 ENCODE Processing Pipeline 386479c824f449712d6386aa440e2609 https://www.encodeproject.org/files/ENCFF455DUW/@@download/ENCFF455DUW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF454JIO bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF928IDQ, ENCFF953OAD 4942437 ENCODE Processing Pipeline f2dafcfaf0713c35fc3437a881d8786c https://www.encodeproject.org/files/ENCFF454JIO/@@download/ENCFF454JIO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF582PJO bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF195PNZ, ENCFF551QAX, ENCFF928IDQ, ENCFF953OAD 5983335 ENCODE Processing Pipeline 13a47567db627d48e89019287157bf98 https://www.encodeproject.org/files/ENCFF582PJO/@@download/ENCFF582PJO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF582NMS bigBed narrowPeak optimal idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF567GON 836186 ENCODE Processing Pipeline bd3991338c534dfeab5ab39d53376a93 https://www.encodeproject.org/files/ENCFF582NMS/@@download/ENCFF582NMS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF664NQF bigBed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF582PJO 11448432 ENCODE Processing Pipeline e594abd520df21e3fe67cfff0b29a7da https://www.encodeproject.org/files/ENCFF664NQF/@@download/ENCFF664NQF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF456BKZ bigBed narrowPeak conservative idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF455DUW 657671 ENCODE Processing Pipeline cd6d0a5e82fd67b417a4ae27521935d6 https://www.encodeproject.org/files/ENCFF456BKZ/@@download/ENCFF456BKZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF567GON bed narrowPeak optimal idr thresholded peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF121VNB, ENCFF419RSJ, ENCFF454JIO, ENCFF582PJO 469938 ENCODE Processing Pipeline 775b7dbac18e40d372df304f3eef7204 https://www.encodeproject.org/files/ENCFF567GON/@@download/ENCFF567GON.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF000YRV bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YTB 195127585 Michael Snyder, Stanford b1f7b9e9564f46ae8ce73f48dc4011e2 https://www.encodeproject.org/files/ENCFF000YRV/@@download/ENCFF000YRV.bam hg19 archived control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YRW bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YSV 312121537 Michael Snyder, Stanford 9af3b7f86799ecc76158e8729920e076 https://www.encodeproject.org/files/ENCFF000YRW/@@download/ENCFF000YRW.bam hg19 archived control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YRZ bigWig signal ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 339374189 Michael Snyder, Stanford 53379f12e90b80fb24cb82b5ebbf6637 https://www.encodeproject.org/files/ENCFF000YRZ/@@download/ENCFF000YRZ.bigWig hg19 archived control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000YSV fastq reads ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 819768922 Michael Snyder, Stanford 8c546920b7617a7083854bddef7f961c https://www.encodeproject.org/files/ENCFF000YSV/@@download/ENCFF000YSV.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YTB fastq reads ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 531998736 Michael Snyder, Stanford 6306dc71f00b2a3b6ecc1e743b44120a https://www.encodeproject.org/files/ENCFF000YTB/@@download/ENCFF000YTB.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, low read length, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CWY bed narrowPeak optimal idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YRV, ENCFF000YRW 281340 ENCODE Consortium Analysis Working Group 1fe51e31a98f953e464df554d510bbd2 https://www.encodeproject.org/files/ENCFF002CWY/@@download/ENCFF002CWY.bed.gz hg19 archived control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF593EPI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF002CWY 608791 ENCODE Consortium 0bbdfafd61a962a916b32c8a19c0c65d https://www.encodeproject.org/files/ENCFF593EPI/@@download/ENCFF593EPI.bigBed hg19 archived control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF468BAA bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YSV, ENCFF807MUK 456657999 ENCODE Processing Pipeline 6ef33cc8aa983408d3e65c426013a9c0 https://www.encodeproject.org/files/ENCFF468BAA/@@download/ENCFF468BAA.bam hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF741YEW bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YTB, ENCFF807MUK 296026443 ENCODE Processing Pipeline 4478a676b204b1cb8a36715a6de60ccb https://www.encodeproject.org/files/ENCFF741YEW/@@download/ENCFF741YEW.bam hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF992NMH bam unfiltered alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YTB, ENCFF807MUK 702987284 ENCODE Processing Pipeline 110c0b7a6bc8bbb97a5813499bfb4ad9 https://www.encodeproject.org/files/ENCFF992NMH/@@download/ENCFF992NMH.bam hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF979OKQ bam unfiltered alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YSV, ENCFF807MUK 836534553 ENCODE Processing Pipeline 1f2d4fa0d7da185a5bc31520a30f3abc https://www.encodeproject.org/files/ENCFF979OKQ/@@download/ENCFF979OKQ.bam hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF928SVR bigBed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF998DOG 10240416 ENCODE Processing Pipeline ec9a5f5fda1c6479c246c5cb7a35204e https://www.encodeproject.org/files/ENCFF928SVR/@@download/ENCFF928SVR.bigBed hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF998DOG bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF468BAA 4386773 ENCODE Processing Pipeline fbf22b1fa5c379715ba2c26fac7097af https://www.encodeproject.org/files/ENCFF998DOG/@@download/ENCFF998DOG.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF145WIA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF284VUQ 469022 ENCODE Processing Pipeline e483e694c9b911039e0a1dcac3d18eed https://www.encodeproject.org/files/ENCFF145WIA/@@download/ENCFF145WIA.bigBed hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF584WLG bigWig signal p-value ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF468BAA 276215720 ENCODE Processing Pipeline c126cbce87484186f3103837c554e1e0 https://www.encodeproject.org/files/ENCFF584WLG/@@download/ENCFF584WLG.bigWig hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF263TDA bigWig signal p-value ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF741YEW 204526796 ENCODE Processing Pipeline 50899d7dc8bf346977143c32d3c80dd4 https://www.encodeproject.org/files/ENCFF263TDA/@@download/ENCFF263TDA.bigWig hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF615YXA bigWig fold change over control ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF741YEW 133988957 ENCODE Processing Pipeline 6aa25589c618116f5a060005f2e9921b https://www.encodeproject.org/files/ENCFF615YXA/@@download/ENCFF615YXA.bigWig hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF456WXA bigWig fold change over control ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF468BAA, ENCFF741YEW 307592391 ENCODE Processing Pipeline ee8cd3ea23ce2728fa86e759a15952c3 https://www.encodeproject.org/files/ENCFF456WXA/@@download/ENCFF456WXA.bigWig hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF365OUP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF999SXR 447424 ENCODE Processing Pipeline 856b2457a67a6f0c3bd2da234aeda7e0 https://www.encodeproject.org/files/ENCFF365OUP/@@download/ENCFF365OUP.bigBed hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF897KKM bigWig signal p-value ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF468BAA, ENCFF741YEW 282605739 ENCODE Processing Pipeline d3340e4cc1b7247a68d0b871b4254368 https://www.encodeproject.org/files/ENCFF897KKM/@@download/ENCFF897KKM.bigWig hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF862ASJ bigBed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF074NOU 10604409 ENCODE Processing Pipeline cfefd1c7a7fd759959ac6eb1884edbf7 https://www.encodeproject.org/files/ENCFF862ASJ/@@download/ENCFF862ASJ.bigBed hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF257OOI bigWig fold change over control ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF468BAA 209578697 ENCODE Processing Pipeline 4a7e3f7a87586f5346a85b178a79f18d https://www.encodeproject.org/files/ENCFF257OOI/@@download/ENCFF257OOI.bigWig hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF074NOU bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF468BAA, ENCFF741YEW 4740714 ENCODE Processing Pipeline 156e0def1016e3c17aac62329795254a https://www.encodeproject.org/files/ENCFF074NOU/@@download/ENCFF074NOU.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF073YUF bigBed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF456MUP 6346251 ENCODE Processing Pipeline 2ff600ac8d9fc3de9c1a5b55c3f9f469 https://www.encodeproject.org/files/ENCFF073YUF/@@download/ENCFF073YUF.bigBed hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF284VUQ bed narrowPeak optimal idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF074NOU, ENCFF456MUP, ENCFF998DOG 247503 ENCODE Processing Pipeline c4f00a8ce99ea04dbc4ba77382440ed9 https://www.encodeproject.org/files/ENCFF284VUQ/@@download/ENCFF284VUQ.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF999SXR bed narrowPeak conservative idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF074NOU, ENCFF456MUP, ENCFF998DOG 231538 ENCODE Processing Pipeline 40bd05402e8e663eab5009035c790bd8 https://www.encodeproject.org/files/ENCFF999SXR/@@download/ENCFF999SXR.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF061GCD bam unfiltered alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YTB, ENCFF643CGH 704825912 ENCODE Processing Pipeline 6a9e2d42336bd12a5ae8efdbf03e12ad https://www.encodeproject.org/files/ENCFF061GCD/@@download/ENCFF061GCD.bam GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF489YJG bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YTB, ENCFF643CGH 295652858 ENCODE Processing Pipeline 7031ee261d34a0181e90a8eb66233bc7 https://www.encodeproject.org/files/ENCFF489YJG/@@download/ENCFF489YJG.bam GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF728WOA bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YSV, ENCFF643CGH 456102128 ENCODE Processing Pipeline 09abc70cbfdd32d6028c5613b7b1536f https://www.encodeproject.org/files/ENCFF728WOA/@@download/ENCFF728WOA.bam GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF728IDI bam unfiltered alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YSV, ENCFF643CGH 838732509 ENCODE Processing Pipeline 65c0f07e44bbb2fd462eeaa71429804f https://www.encodeproject.org/files/ENCFF728IDI/@@download/ENCFF728IDI.bam GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF176JCU bigWig signal p-value ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF482LDC, ENCFF728WOA 286024466 ENCODE Processing Pipeline 9acfb7d4c8ef2254ccfb018b925ee4af https://www.encodeproject.org/files/ENCFF176JCU/@@download/ENCFF176JCU.bigWig GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF319VZI bigWig signal p-value ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF482LDC, ENCFF489YJG, ENCFF728WOA 282175648 ENCODE Processing Pipeline 46bc3f32c0bcfb90b0cec574c783b998 https://www.encodeproject.org/files/ENCFF319VZI/@@download/ENCFF319VZI.bigWig GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF942NFJ bigWig signal p-value ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF489YJG 251230440 ENCODE Processing Pipeline 0eb57766e8ef97b801e3029bf80c111e https://www.encodeproject.org/files/ENCFF942NFJ/@@download/ENCFF942NFJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF456MUP bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF741YEW 2659144 ENCODE Processing Pipeline acdf1392520ee91f4bddbce05b2fea39 https://www.encodeproject.org/files/ENCFF456MUP/@@download/ENCFF456MUP.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF524ALZ bigWig fold change over control ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF482LDC, ENCFF728WOA 211402201 ENCODE Processing Pipeline 32e6e04f28c708e50e73e036aa1a7eb9 https://www.encodeproject.org/files/ENCFF524ALZ/@@download/ENCFF524ALZ.bigWig GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF190DFR bigWig fold change over control ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF489YJG 132947008 ENCODE Processing Pipeline bf637260f29c97879aba69b73668c1c7 https://www.encodeproject.org/files/ENCFF190DFR/@@download/ENCFF190DFR.bigWig GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF176RYJ bigWig fold change over control ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF482LDC, ENCFF489YJG, ENCFF728WOA 308432319 ENCODE Processing Pipeline 612141f0b43d5ef53fab71fd68b1e6a0 https://www.encodeproject.org/files/ENCFF176RYJ/@@download/ENCFF176RYJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF428TZB bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF482LDC, ENCFF728WOA 4385660 ENCODE Processing Pipeline 7642224d73455b2b97f72d1759ee99b3 https://www.encodeproject.org/files/ENCFF428TZB/@@download/ENCFF428TZB.bed.gz GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF340RZZ bigBed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF428TZB 10246983 ENCODE Processing Pipeline a7719ccb49bc53b0430d0297f4c119c1 https://www.encodeproject.org/files/ENCFF340RZZ/@@download/ENCFF340RZZ.bigBed GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF938AOL bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF489YJG 2700348 ENCODE Processing Pipeline 7a0f21770434ac666ef4639d8aa36df9 https://www.encodeproject.org/files/ENCFF938AOL/@@download/ENCFF938AOL.bed.gz GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF131WCK bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF482LDC, ENCFF489YJG, ENCFF728WOA 4734472 ENCODE Processing Pipeline cb3be48f1ec22b43ced5a0e81152e3ee https://www.encodeproject.org/files/ENCFF131WCK/@@download/ENCFF131WCK.bed.gz GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF704NAF bigBed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF938AOL 6373824 ENCODE Processing Pipeline 801a1f98bd3537e2b0e1815667169338 https://www.encodeproject.org/files/ENCFF704NAF/@@download/ENCFF704NAF.bigBed GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF588XNN bigBed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF131WCK 10604215 ENCODE Processing Pipeline 312357b3f9a33605e2aa15b2f0cecdfd https://www.encodeproject.org/files/ENCFF588XNN/@@download/ENCFF588XNN.bigBed GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF593MBI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548PPV 450873 ENCODE Processing Pipeline 8577059b07e45874530eedf5b83403f9 https://www.encodeproject.org/files/ENCFF593MBI/@@download/ENCFF593MBI.bigBed GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF548PPV bed narrowPeak conservative idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF131WCK, ENCFF419RSJ, ENCFF428TZB, ENCFF938AOL 234167 ENCODE Processing Pipeline 2e839a708bb9f56ef306715c5cf9b3bb https://www.encodeproject.org/files/ENCFF548PPV/@@download/ENCFF548PPV.bed.gz GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF346LMY bed narrowPeak optimal idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF131WCK, ENCFF419RSJ, ENCFF428TZB, ENCFF938AOL 251613 ENCODE Processing Pipeline 88bc01e2bc400f74f411b8459b4d70c6 https://www.encodeproject.org/files/ENCFF346LMY/@@download/ENCFF346LMY.bed.gz GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF405KVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF346LMY 474826 ENCODE Processing Pipeline e147ad804b61bd926d586d1263be1aec https://www.encodeproject.org/files/ENCFF405KVS/@@download/ENCFF405KVS.bigBed GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF147CXN fastq reads ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF408SWF 5427059861 Michael Snyder, Stanford d44ba03d9a6ea93e45232b850f036181 SRA:SRR5112250 https://www.encodeproject.org/files/ENCFF147CXN/@@download/ENCFF147CXN.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF763NMB fastq reads ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF263QAS 3680927525 Michael Snyder, Stanford 2af1204080f2dc47e3dc6e4dae08ac16 SRA:SRR5112249 https://www.encodeproject.org/files/ENCFF763NMB/@@download/ENCFF763NMB.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF263QAS fastq reads ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF763NMB 3376546762 Michael Snyder, Stanford 15aaef0cfdba7b252abd3757a312c4c4 SRA:SRR5112249 https://www.encodeproject.org/files/ENCFF263QAS/@@download/ENCFF263QAS.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF408SWF fastq reads ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF147CXN 5895496528 Michael Snyder, Stanford 493e3e49753b56046bfb99bb2bdb5aef SRA:SRR5112250 https://www.encodeproject.org/files/ENCFF408SWF/@@download/ENCFF408SWF.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF844OKB bam unfiltered alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 100 ENCFF263QAS, ENCFF763NMB, ENCFF807MUK 6821563587 ENCODE Processing Pipeline 3255d5eb9862d567aadad5d195c96e6d https://www.encodeproject.org/files/ENCFF844OKB/@@download/ENCFF844OKB.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF916XXF bam unfiltered alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 100 ENCFF263QAS, ENCFF643CGH, ENCFF763NMB 6828086543 ENCODE Processing Pipeline 2bea7e9658fff8938446d11eddc15a6b https://www.encodeproject.org/files/ENCFF916XXF/@@download/ENCFF916XXF.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF392ICN bam unfiltered alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 100 ENCFF147CXN, ENCFF408SWF, ENCFF643CGH 10238070057 ENCODE Processing Pipeline 229459b771d70303ed5680109304164b https://www.encodeproject.org/files/ENCFF392ICN/@@download/ENCFF392ICN.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF617WID bam unfiltered alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 100 ENCFF147CXN, ENCFF408SWF, ENCFF807MUK 10230808957 ENCODE Processing Pipeline e083f01dae6d7e3712c2958de6a7e396 https://www.encodeproject.org/files/ENCFF617WID/@@download/ENCFF617WID.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF819KCS bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 100 ENCFF263QAS, ENCFF763NMB, ENCFF807MUK 4767066108 ENCODE Processing Pipeline 9b2a438e5fa80a2b7851b7cd515f9b72 https://www.encodeproject.org/files/ENCFF819KCS/@@download/ENCFF819KCS.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF008IZS bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 100 ENCFF263QAS, ENCFF643CGH, ENCFF763NMB 4771040275 ENCODE Processing Pipeline 4bb127af9ab8944560b7b535a5e40379 https://www.encodeproject.org/files/ENCFF008IZS/@@download/ENCFF008IZS.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF599IYT bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 100 ENCFF147CXN, ENCFF408SWF, ENCFF643CGH 7686577584 ENCODE Processing Pipeline 938c9bc96c10906530aef62d7b5d5b31 https://www.encodeproject.org/files/ENCFF599IYT/@@download/ENCFF599IYT.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF608UCM bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 100 ENCFF147CXN, ENCFF408SWF, ENCFF807MUK 7679608075 ENCODE Processing Pipeline da204060db0252c562ecc7488bfdc27b https://www.encodeproject.org/files/ENCFF608UCM/@@download/ENCFF608UCM.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF587WFG bigWig signal p-value ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF608UCM, ENCFF834TUP 1979215841 ENCODE Processing Pipeline f1631f1176c44cf6f4a470825e4a0e8d https://www.encodeproject.org/files/ENCFF587WFG/@@download/ENCFF587WFG.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF561CRM bigWig signal p-value ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF819KCS, ENCFF834TUP 1361637180 ENCODE Processing Pipeline df15a4e9c5f217a121f74049b7397eaa https://www.encodeproject.org/files/ENCFF561CRM/@@download/ENCFF561CRM.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF765XCJ bigWig signal p-value ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF608UCM, ENCFF819KCS, ENCFF834TUP 2432713591 ENCODE Processing Pipeline 3ebea5e005bf2cb547cee629f3483564 https://www.encodeproject.org/files/ENCFF765XCJ/@@download/ENCFF765XCJ.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF105LNX bigWig fold change over control ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF608UCM, ENCFF834TUP 2352780464 ENCODE Processing Pipeline 1044ab6398b91e8a5ab8dcb2a55f12e9 https://www.encodeproject.org/files/ENCFF105LNX/@@download/ENCFF105LNX.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF727IES bigWig fold change over control ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF819KCS, ENCFF834TUP 1456771274 ENCODE Processing Pipeline e442cadb7e3af28222dff9bb654b6cf2 https://www.encodeproject.org/files/ENCFF727IES/@@download/ENCFF727IES.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF734YKJ bigWig fold change over control ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF608UCM, ENCFF819KCS, ENCFF834TUP 2833944338 ENCODE Processing Pipeline dfdc4fcba5e75d964d2b83224d1ebf61 https://www.encodeproject.org/files/ENCFF734YKJ/@@download/ENCFF734YKJ.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF799KLQ bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF608UCM, ENCFF834TUP 7302595 ENCODE Processing Pipeline 0da9304d515c27247d0165e6bc65ba65 https://www.encodeproject.org/files/ENCFF799KLQ/@@download/ENCFF799KLQ.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF797FYJ bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF819KCS, ENCFF834TUP 7147454 ENCODE Processing Pipeline 9b5870a34fff2d07acf06a7e8eb58f90 https://www.encodeproject.org/files/ENCFF797FYJ/@@download/ENCFF797FYJ.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF770MXX bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF608UCM, ENCFF819KCS, ENCFF834TUP 7328583 ENCODE Processing Pipeline 761e4c1c347141bdfc481974a4d75db7 https://www.encodeproject.org/files/ENCFF770MXX/@@download/ENCFF770MXX.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF299GZN bigBed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF797FYJ 13202225 ENCODE Processing Pipeline cb1d28fe6284eeade3e0ac4a4b361c4b https://www.encodeproject.org/files/ENCFF299GZN/@@download/ENCFF299GZN.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF527MZO bigBed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF799KLQ 13243766 ENCODE Processing Pipeline 6ac3450136c05bc2a45e8151e61fb642 https://www.encodeproject.org/files/ENCFF527MZO/@@download/ENCFF527MZO.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF371XPD bigBed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF770MXX 13249171 ENCODE Processing Pipeline b597119640def01682949696a42ec0b3 https://www.encodeproject.org/files/ENCFF371XPD/@@download/ENCFF371XPD.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF526UKS bed narrowPeak conservative idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF770MXX, ENCFF797FYJ, ENCFF799KLQ 693900 ENCODE Processing Pipeline ce905593eb0cabf7dfedb1ec5f13ea07 https://www.encodeproject.org/files/ENCFF526UKS/@@download/ENCFF526UKS.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF738WCE bed narrowPeak optimal idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF770MXX, ENCFF797FYJ, ENCFF799KLQ 836134 ENCODE Processing Pipeline f68cd3bad39ffbc3f6ceba8dd9405852 https://www.encodeproject.org/files/ENCFF738WCE/@@download/ENCFF738WCE.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF244QEW bigBed narrowPeak conservative idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF380ICC 1273378 ENCODE Processing Pipeline ca0f75663fb397612f809ca7ee827e8c https://www.encodeproject.org/files/ENCFF244QEW/@@download/ENCFF244QEW.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status ENCFF238HAS bigBed narrowPeak optimal idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF498NVC 1483174 ENCODE Processing Pipeline 0aa1e8a0f12c3c9ffc1c02341ba54374 https://www.encodeproject.org/files/ENCFF238HAS/@@download/ENCFF238HAS.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status ENCFF404PYP bigWig signal p-value ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF599IYT, ENCFF712WXB, ENCFF790TAN 2251070215 ENCODE Processing Pipeline 7da557bbf7f66cfd6ad543e9e1eacb9f https://www.encodeproject.org/files/ENCFF404PYP/@@download/ENCFF404PYP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF881ECN bigWig signal p-value ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF008IZS, ENCFF712WXB 1406056276 ENCODE Processing Pipeline 7542368a0416d0180366620bf4d48702 https://www.encodeproject.org/files/ENCFF881ECN/@@download/ENCFF881ECN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF889DZH bigWig fold change over control ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF599IYT, ENCFF712WXB, ENCFF790TAN 2387405823 ENCODE Processing Pipeline f7dac143d90f7f560af466cd53837889 https://www.encodeproject.org/files/ENCFF889DZH/@@download/ENCFF889DZH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF946PQW bigWig fold change over control ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF008IZS, ENCFF712WXB 1466803695 ENCODE Processing Pipeline 5b8ce4accd54210b6cc47e6cda5f1b56 https://www.encodeproject.org/files/ENCFF946PQW/@@download/ENCFF946PQW.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF900ZKJ bigWig fold change over control ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF008IZS, ENCFF599IYT, ENCFF712WXB, ENCFF790TAN 2811697999 ENCODE Processing Pipeline f60adf72c64b3bd99a1efac801bea93b https://www.encodeproject.org/files/ENCFF900ZKJ/@@download/ENCFF900ZKJ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF453CHS bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF008IZS, ENCFF599IYT, ENCFF712WXB, ENCFF790TAN 7333070 ENCODE Processing Pipeline f249d5625433af4a976b488343574dd2 https://www.encodeproject.org/files/ENCFF453CHS/@@download/ENCFF453CHS.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF796VMI bed narrowPeak optimal idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF313FVM, ENCFF378FXV, ENCFF419RSJ, ENCFF453CHS 840969 ENCODE Processing Pipeline cc84cf4b01776c9894610ffbf9bb953c https://www.encodeproject.org/files/ENCFF796VMI/@@download/ENCFF796VMI.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF453IHK bigBed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF378FXV 13186400 ENCODE Processing Pipeline 8a3e1c06be33078490a69517a263d300 https://www.encodeproject.org/files/ENCFF453IHK/@@download/ENCFF453IHK.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF136IOI bigBed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF453CHS 13258646 ENCODE Processing Pipeline fc7e2d40c2a7954eadf391c930eac104 https://www.encodeproject.org/files/ENCFF136IOI/@@download/ENCFF136IOI.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF313FVM bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF599IYT, ENCFF712WXB, ENCFF790TAN 7318009 ENCODE Processing Pipeline c1d61ac32bdbaa9c41150ab4a4388a0d https://www.encodeproject.org/files/ENCFF313FVM/@@download/ENCFF313FVM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF693ORN bigBed narrowPeak conservative idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF605VXL 1277213 ENCODE Processing Pipeline 0aae34e3aa7af1f5f632060958013542 https://www.encodeproject.org/files/ENCFF693ORN/@@download/ENCFF693ORN.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF378FXV bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF008IZS, ENCFF712WXB 7078808 ENCODE Processing Pipeline 11e8adb2acbef5974b773d997816d254 https://www.encodeproject.org/files/ENCFF378FXV/@@download/ENCFF378FXV.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF605VXL bed narrowPeak conservative idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF313FVM, ENCFF378FXV, ENCFF419RSJ, ENCFF453CHS 695567 ENCODE Processing Pipeline cc32f60d69be7cc808e508a6a9ae9879 https://www.encodeproject.org/files/ENCFF605VXL/@@download/ENCFF605VXL.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF281WRG bigBed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF313FVM 13270058 ENCODE Processing Pipeline c5c361eb5709a4e59a5cae7407074f80 https://www.encodeproject.org/files/ENCFF281WRG/@@download/ENCFF281WRG.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF966QQR bigBed narrowPeak optimal idr thresholded peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF796VMI 1491390 ENCODE Processing Pipeline 0a234fdfd653a166352c29db906c7f9a https://www.encodeproject.org/files/ENCFF966QQR/@@download/ENCFF966QQR.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF306NFN bigWig signal p-value ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF008IZS, ENCFF599IYT, ENCFF712WXB, ENCFF790TAN 2410763873 ENCODE Processing Pipeline 6f7c389d27f39e8b59832e3ff706a4e9 https://www.encodeproject.org/files/ENCFF306NFN/@@download/ENCFF306NFN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF619WEO bam unfiltered alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 50 ENCFF807MUK, ENCFF962FCU, ENCFF994DBJ 1493561843 ENCODE Processing Pipeline ca3082a60966f215ac95604cf9192bbb https://www.encodeproject.org/files/ENCFF619WEO/@@download/ENCFF619WEO.bam hg19 released missing genetic modification characterization ENCFF864FKK bam unfiltered alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 50 ENCFF734FMD, ENCFF807MUK, ENCFF862UUB 1453833745 ENCODE Processing Pipeline eefb7897f08d281d8c1f026143cd9e9d https://www.encodeproject.org/files/ENCFF864FKK/@@download/ENCFF864FKK.bam hg19 released missing genetic modification characterization ENCFF962FCU fastq reads ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 631111094 Kevin White, UChicago e366f025ef8774e4489b168ac3e5a6cb SRA:SRR6213004 https://www.encodeproject.org/files/ENCFF962FCU/@@download/ENCFF962FCU.fastq.gz Illumina HiSeq 2500 /files/ENCFF647SGY/, /files/ENCFF864QSY/ released missing genetic modification characterization ENCFF734FMD fastq reads ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 663018516 Kevin White, UChicago 576af8fa0733a347981ab6a1daf6669b SRA:SRR6213002 https://www.encodeproject.org/files/ENCFF734FMD/@@download/ENCFF734FMD.fastq.gz Illumina HiSeq 2500 /files/ENCFF647SGY/, /files/ENCFF864QSY/ released missing genetic modification characterization ENCFF994DBJ fastq reads ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 753819574 Kevin White, UChicago 7cbd990e70ba63fae55e55d0a234c2d0 SRA:SRR6213005 https://www.encodeproject.org/files/ENCFF994DBJ/@@download/ENCFF994DBJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF647SGY/, /files/ENCFF864QSY/ released missing genetic modification characterization ENCFF862UUB fastq reads ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 676971720 Kevin White, UChicago 577baaebd645d8d19d53aab7af449c3d SRA:SRR6213003 https://www.encodeproject.org/files/ENCFF862UUB/@@download/ENCFF862UUB.fastq.gz Illumina HiSeq 2000 /files/ENCFF647SGY/, /files/ENCFF864QSY/ released missing genetic modification characterization ENCFF323PVX bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 50 ENCFF734FMD, ENCFF807MUK, ENCFF862UUB 1125719840 ENCODE Processing Pipeline 433d4ee6f9f589dd51d96625898e32ee https://www.encodeproject.org/files/ENCFF323PVX/@@download/ENCFF323PVX.bam hg19 released missing genetic modification characterization ENCFF133ZYE bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 50 ENCFF807MUK, ENCFF962FCU, ENCFF994DBJ 1141658112 ENCODE Processing Pipeline baf7a6d7c1087c457d82f036f89b3800 https://www.encodeproject.org/files/ENCFF133ZYE/@@download/ENCFF133ZYE.bam hg19 released missing genetic modification characterization ENCFF041UZB bigWig signal p-value ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF133ZYE, ENCFF754ZXY 502655059 ENCODE Processing Pipeline f99e72bd11520c38b8ac496feef5096c https://www.encodeproject.org/files/ENCFF041UZB/@@download/ENCFF041UZB.bigWig hg19 released missing genetic modification characterization ENCFF600NSH bigWig signal p-value ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF133ZYE, ENCFF323PVX, ENCFF754ZXY 493409335 ENCODE Processing Pipeline 19a7986c376d7fa990ab482e2767a6a2 https://www.encodeproject.org/files/ENCFF600NSH/@@download/ENCFF600NSH.bigWig hg19 released missing genetic modification characterization ENCFF548MHD bigWig signal p-value ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF323PVX, ENCFF754ZXY 496626049 ENCODE Processing Pipeline 517f7230f5fa626b64b8d3f6e4be6baa https://www.encodeproject.org/files/ENCFF548MHD/@@download/ENCFF548MHD.bigWig hg19 released missing genetic modification characterization ENCFF889PJR bigWig fold change over control ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF133ZYE, ENCFF754ZXY 507515837 ENCODE Processing Pipeline bd073d89f31c8429e362c0a6477a777b https://www.encodeproject.org/files/ENCFF889PJR/@@download/ENCFF889PJR.bigWig hg19 released missing genetic modification characterization ENCFF059DNT bigWig fold change over control ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF133ZYE, ENCFF323PVX, ENCFF754ZXY 815174999 ENCODE Processing Pipeline 98700255d786d15ab76d170e33c038ae https://www.encodeproject.org/files/ENCFF059DNT/@@download/ENCFF059DNT.bigWig hg19 released missing genetic modification characterization ENCFF942FSJ bigWig fold change over control ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF323PVX, ENCFF754ZXY 498167726 ENCODE Processing Pipeline 9bb6f1ca2add76ac9040323501fa5449 https://www.encodeproject.org/files/ENCFF942FSJ/@@download/ENCFF942FSJ.bigWig hg19 released missing genetic modification characterization ENCFF908JEV bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF133ZYE, ENCFF754ZXY 6500240 ENCODE Processing Pipeline 70b159f8f15ea265f6041673fefe95e3 https://www.encodeproject.org/files/ENCFF908JEV/@@download/ENCFF908JEV.bed.gz hg19 released missing genetic modification characterization ENCFF040CEH bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF323PVX, ENCFF754ZXY 6561709 ENCODE Processing Pipeline bce420b248bca27e98b833b8038a3721 https://www.encodeproject.org/files/ENCFF040CEH/@@download/ENCFF040CEH.bed.gz hg19 released missing genetic modification characterization ENCFF205LAU bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF133ZYE, ENCFF323PVX, ENCFF754ZXY 7051178 ENCODE Processing Pipeline 6570c5867feab057e5b6b595bcdafa55 https://www.encodeproject.org/files/ENCFF205LAU/@@download/ENCFF205LAU.bed.gz hg19 released missing genetic modification characterization ENCFF485SBF bigBed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF205LAU 12883570 ENCODE Processing Pipeline 9098364e8620a26e37b49623bb31cd5b https://www.encodeproject.org/files/ENCFF485SBF/@@download/ENCFF485SBF.bigBed hg19 released missing genetic modification characterization ENCFF609GHU bigBed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF040CEH 12887937 ENCODE Processing Pipeline 8c933bf1d637ac9b5e093462d790590b https://www.encodeproject.org/files/ENCFF609GHU/@@download/ENCFF609GHU.bigBed hg19 released missing genetic modification characterization ENCFF447GXO bigBed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF908JEV 12984876 ENCODE Processing Pipeline e37d07ee993c5252d154888d43688636 https://www.encodeproject.org/files/ENCFF447GXO/@@download/ENCFF447GXO.bigBed hg19 released missing genetic modification characterization ENCFF865KAK bam unfiltered alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF734FMD, ENCFF862UUB 1458677286 ENCODE Processing Pipeline 71d882d38ae51850681356426bf097b8 https://www.encodeproject.org/files/ENCFF865KAK/@@download/ENCFF865KAK.bam GRCh38 released missing genetic modification characterization ENCFF269CMX bam unfiltered alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF962FCU, ENCFF994DBJ 1498543707 ENCODE Processing Pipeline e1842ce48616ff7a8281afcbbfca23a6 https://www.encodeproject.org/files/ENCFF269CMX/@@download/ENCFF269CMX.bam GRCh38 released missing genetic modification characterization ENCFF227TEG bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF734FMD, ENCFF862UUB 1125039299 ENCODE Processing Pipeline 4d22f14f4a745b23db1e37cff39298c2 https://www.encodeproject.org/files/ENCFF227TEG/@@download/ENCFF227TEG.bam GRCh38 released missing genetic modification characterization ENCFF398UYF bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF962FCU, ENCFF994DBJ 1141050630 ENCODE Processing Pipeline fb6213602f3784da70787c09666dc466 https://www.encodeproject.org/files/ENCFF398UYF/@@download/ENCFF398UYF.bam GRCh38 released missing genetic modification characterization ENCFF049LED bigWig signal p-value ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF321YGO, ENCFF398UYF 506874893 ENCODE Processing Pipeline 48b50f9d33e1d6d4581672c2961868fc https://www.encodeproject.org/files/ENCFF049LED/@@download/ENCFF049LED.bigWig GRCh38 released missing genetic modification characterization ENCFF767WEN bigWig fold change over control ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF227TEG, ENCFF321YGO 501667498 ENCODE Processing Pipeline c97ea3e3eb9b228cd28451a88fce4e05 https://www.encodeproject.org/files/ENCFF767WEN/@@download/ENCFF767WEN.bigWig GRCh38 released missing genetic modification characterization ENCFF120BJN bigWig signal p-value ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF227TEG, ENCFF321YGO, ENCFF398UYF 489435261 ENCODE Processing Pipeline 3a67ab333ddb1c866af0b20912908161 https://www.encodeproject.org/files/ENCFF120BJN/@@download/ENCFF120BJN.bigWig GRCh38 released missing genetic modification characterization ENCFF407NIT bigWig fold change over control ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF321YGO, ENCFF398UYF 518480234 ENCODE Processing Pipeline aa0183628c1018fa9d5a4f7f1ea7b387 https://www.encodeproject.org/files/ENCFF407NIT/@@download/ENCFF407NIT.bigWig GRCh38 released missing genetic modification characterization ENCFF683YFE bigWig signal p-value ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF227TEG, ENCFF321YGO 499981990 ENCODE Processing Pipeline 0fc2486208cf76f427992bf45318756d https://www.encodeproject.org/files/ENCFF683YFE/@@download/ENCFF683YFE.bigWig GRCh38 released missing genetic modification characterization ENCFF082UPZ bigWig fold change over control ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF227TEG, ENCFF321YGO, ENCFF398UYF 800990123 ENCODE Processing Pipeline 174499424cf76d2ff5c18832305d5bae https://www.encodeproject.org/files/ENCFF082UPZ/@@download/ENCFF082UPZ.bigWig GRCh38 released missing genetic modification characterization ENCFF061LHW bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF321YGO, ENCFF398UYF 6356677 ENCODE Processing Pipeline f3c07592e6c320e6d26ce5944b09d387 https://www.encodeproject.org/files/ENCFF061LHW/@@download/ENCFF061LHW.bed.gz GRCh38 released missing genetic modification characterization ENCFF587AOA bigBed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF061LHW 12969800 ENCODE Processing Pipeline ad096c9f8eb44941def6b2c7500222d3 https://www.encodeproject.org/files/ENCFF587AOA/@@download/ENCFF587AOA.bigBed GRCh38 released missing genetic modification characterization ENCFF822RHV bigBed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF528UAD 12885600 ENCODE Processing Pipeline bc2a2bf539092873c392b5cdcc29f710 https://www.encodeproject.org/files/ENCFF822RHV/@@download/ENCFF822RHV.bigBed GRCh38 released missing genetic modification characterization ENCFF528UAD bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF227TEG, ENCFF321YGO 6404704 ENCODE Processing Pipeline 3bb9e6793cea75259ed205c93f2ceafe https://www.encodeproject.org/files/ENCFF528UAD/@@download/ENCFF528UAD.bed.gz GRCh38 released missing genetic modification characterization ENCFF153AXV bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF227TEG, ENCFF321YGO, ENCFF398UYF 6952064 ENCODE Processing Pipeline 45b6f69cf629eb6ff4ab6f509feea49e https://www.encodeproject.org/files/ENCFF153AXV/@@download/ENCFF153AXV.bed.gz GRCh38 released missing genetic modification characterization ENCFF184GRQ bigBed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF153AXV 12900695 ENCODE Processing Pipeline e899f4278055c706211c2817dbcbabfd https://www.encodeproject.org/files/ENCFF184GRQ/@@download/ENCFF184GRQ.bigBed GRCh38 released missing genetic modification characterization ENCFF045ENB bigBed narrowPeak optimal idr thresholded peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF168PYI 1071549 ENCODE Processing Pipeline 27d7979ff2cab85fbb76e05942794927 https://www.encodeproject.org/files/ENCFF045ENB/@@download/ENCFF045ENB.bigBed GRCh38 released missing genetic modification characterization ENCFF168PYI bed narrowPeak optimal idr thresholded peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF061LHW, ENCFF153AXV, ENCFF419RSJ, ENCFF528UAD 484763 ENCODE Processing Pipeline 211b66d0c8bb0ae5a04fb5856233f719 https://www.encodeproject.org/files/ENCFF168PYI/@@download/ENCFF168PYI.bed.gz GRCh38 released missing genetic modification characterization ENCFF248AOD bed narrowPeak optimal idr thresholded peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF040CEH, ENCFF205LAU, ENCFF908JEV 405344 ENCODE Processing Pipeline 2b29bf3d96987a1477ec6855a06b7040 https://www.encodeproject.org/files/ENCFF248AOD/@@download/ENCFF248AOD.bed.gz hg19 released missing genetic modification characterization ENCFF715ZYG bigBed narrowPeak optimal idr thresholded peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF248AOD 771468 ENCODE Processing Pipeline e351259e1c6b4505408a431862748604 https://www.encodeproject.org/files/ENCFF715ZYG/@@download/ENCFF715ZYG.bigBed hg19 released missing genetic modification characterization ENCFF000PPJ bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PPW 806719836 Richard Myers, HAIB 1a3767d19cb4ebf89cfa29ccc5404e1f https://www.encodeproject.org/files/ENCFF000PPJ/@@download/ENCFF000PPJ.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000PPK bigBed broadPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHK 401974 Richard Myers, HAIB 9de3226b1af6b6483b7060c6558ada06 https://www.encodeproject.org/files/ENCFF000PPK/@@download/ENCFF000PPK.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000PPL bigBed broadPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHL 914732 Richard Myers, HAIB 7ba06e9ccf0bab8df7469bf26f1f557b https://www.encodeproject.org/files/ENCFF000PPL/@@download/ENCFF000PPL.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000PPN bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PQC 1407293343 Richard Myers, HAIB 8c0dd25c453b7a62f40baf1dd4495b90 https://www.encodeproject.org/files/ENCFF000PPN/@@download/ENCFF000PPN.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000PPO bigWig raw signal ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 14946845 Richard Myers, HAIB 2a52acb7848d5510387a8086fab7033b https://www.encodeproject.org/files/ENCFF000PPO/@@download/ENCFF000PPO.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000PPP bigWig raw signal ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 48237360 Richard Myers, HAIB c5ef48eb65f185c498268ea12021db41 https://www.encodeproject.org/files/ENCFF000PPP/@@download/ENCFF000PPP.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000PPW fastq reads ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1053721655 Richard Myers, HAIB cbbc7af22415e7f7c4c39598bde6d122 https://www.encodeproject.org/files/ENCFF000PPW/@@download/ENCFF000PPW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000PQC fastq reads ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1994482361 Richard Myers, HAIB fee989923a7d2e1b0b060f12e3d55942 https://www.encodeproject.org/files/ENCFF000PQC/@@download/ENCFF000PQC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001UHK bed broadPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 170234 Richard Myers, HAIB a86033dce55d9cfa0be5d803b0cfca57 https://www.encodeproject.org/files/ENCFF001UHK/@@download/ENCFF001UHK.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001UHL bed broadPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 479185 Richard Myers, HAIB 69a87fcceecf1640815c6a1c276ea496 https://www.encodeproject.org/files/ENCFF001UHL/@@download/ENCFF001UHL.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CLA bed narrowPeak optimal idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 394744 ENCODE Consortium Analysis Working Group f6dc806d724b85aa7551d084e3dc160b https://www.encodeproject.org/files/ENCFF002CLA/@@download/ENCFF002CLA.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF351QGY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLA 1065667 ENCODE Consortium 43810c9461ed15165cce10db57b736fe https://www.encodeproject.org/files/ENCFF351QGY/@@download/ENCFF351QGY.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF281FRR bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPW, ENCFF643CGH 532601731 ENCODE Processing Pipeline 8cf1c3ac22adb3038a73178fbf453044 https://www.encodeproject.org/files/ENCFF281FRR/@@download/ENCFF281FRR.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF481VKV bam unfiltered alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPW, ENCFF643CGH 1277463218 ENCODE Processing Pipeline 1892622058556e614dfa30fca15e5208 https://www.encodeproject.org/files/ENCFF481VKV/@@download/ENCFF481VKV.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF053QKA bam unfiltered alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQC, ENCFF643CGH 2399396489 ENCODE Processing Pipeline a22fe0b7f7e517c8ef4352bd0d40d4b4 https://www.encodeproject.org/files/ENCFF053QKA/@@download/ENCFF053QKA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF122ECM bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQC, ENCFF643CGH 1002350183 ENCODE Processing Pipeline a803f0442da91e49f41539c9d0c9e359 https://www.encodeproject.org/files/ENCFF122ECM/@@download/ENCFF122ECM.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF504NAO bam unfiltered alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPW, ENCFF807MUK 1272969839 ENCODE Processing Pipeline ed63ba72a4c1791e4751a70d01deb144 https://www.encodeproject.org/files/ENCFF504NAO/@@download/ENCFF504NAO.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF459TVC bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPW, ENCFF807MUK 532915607 ENCODE Processing Pipeline 3fb9a0cd86bef37cadceb31bd726a1f3 https://www.encodeproject.org/files/ENCFF459TVC/@@download/ENCFF459TVC.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF688QGX bam unfiltered alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQC, ENCFF807MUK 2391974525 ENCODE Processing Pipeline e9e1b8118b9d54e50758d6da06aad547 https://www.encodeproject.org/files/ENCFF688QGX/@@download/ENCFF688QGX.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF803DFL bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQC, ENCFF807MUK 1002904752 ENCODE Processing Pipeline e32e54992339067250e1e10f62745557 https://www.encodeproject.org/files/ENCFF803DFL/@@download/ENCFF803DFL.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF761TEO bigWig signal p-value ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281FRR, ENCFF943DZB 290242473 ENCODE Processing Pipeline 0654cbeb4ea366efbfa650204166fac5 https://www.encodeproject.org/files/ENCFF761TEO/@@download/ENCFF761TEO.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF341BMC bigWig signal p-value ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122ECM, ENCFF943DZB 357311727 ENCODE Processing Pipeline 030e714b76099a8e1d09b6aa93e78466 https://www.encodeproject.org/files/ENCFF341BMC/@@download/ENCFF341BMC.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF564LAJ bigWig signal p-value ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122ECM, ENCFF281FRR, ENCFF943DZB 329350663 ENCODE Processing Pipeline 7d5afa7693b715f6210f0336eb610ed2 https://www.encodeproject.org/files/ENCFF564LAJ/@@download/ENCFF564LAJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF467UXL bigWig fold change over control ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281FRR, ENCFF943DZB 211492608 ENCODE Processing Pipeline 2e4f99551266b517edf7a0030c5fa7ef https://www.encodeproject.org/files/ENCFF467UXL/@@download/ENCFF467UXL.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF584EYJ bigWig fold change over control ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122ECM, ENCFF943DZB 330605103 ENCODE Processing Pipeline 01277f3a1e703699d6f48885f844b0c6 https://www.encodeproject.org/files/ENCFF584EYJ/@@download/ENCFF584EYJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF768RBO bigBed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF446TZX 9929461 ENCODE Processing Pipeline 8bf193083d96a0454932b9d17ed01afb https://www.encodeproject.org/files/ENCFF768RBO/@@download/ENCFF768RBO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF084IGC bigBed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF711WGR 12963392 ENCODE Processing Pipeline 669bc9c370524254c0809ed18e2a5def https://www.encodeproject.org/files/ENCFF084IGC/@@download/ENCFF084IGC.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF746QKY bigWig fold change over control ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122ECM, ENCFF281FRR, ENCFF943DZB 478849583 ENCODE Processing Pipeline 5af3479da305930184f4bfa790ceb217 https://www.encodeproject.org/files/ENCFF746QKY/@@download/ENCFF746QKY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF446TZX bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281FRR, ENCFF943DZB 4157143 ENCODE Processing Pipeline 6e23bca096afad4609d63180b8adf781 https://www.encodeproject.org/files/ENCFF446TZX/@@download/ENCFF446TZX.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF711WGR bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122ECM, ENCFF943DZB 5337686 ENCODE Processing Pipeline 514d305b9f96d7ff1baf02584cc95510 https://www.encodeproject.org/files/ENCFF711WGR/@@download/ENCFF711WGR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF327PSB bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122ECM, ENCFF281FRR, ENCFF943DZB 5711887 ENCODE Processing Pipeline 9fd898b5bf2afec4fd9d766d9168b9ac https://www.encodeproject.org/files/ENCFF327PSB/@@download/ENCFF327PSB.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF012MMC bigBed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF327PSB 13203650 ENCODE Processing Pipeline 3070edafb9c5509de8c237c1316642d8 https://www.encodeproject.org/files/ENCFF012MMC/@@download/ENCFF012MMC.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF635YMI bed narrowPeak optimal idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF327PSB, ENCFF419RSJ, ENCFF446TZX, ENCFF711WGR 412215 ENCODE Processing Pipeline cc228b7f113019a06503b2dc60844057 https://www.encodeproject.org/files/ENCFF635YMI/@@download/ENCFF635YMI.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF025EZP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF635YMI 925314 ENCODE Processing Pipeline 45fda9bf61d29c79547bbd329b614075 https://www.encodeproject.org/files/ENCFF025EZP/@@download/ENCFF025EZP.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF222NHS bed narrowPeak conservative idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF327PSB, ENCFF419RSJ, ENCFF446TZX, ENCFF711WGR 316092 ENCODE Processing Pipeline 9bbfe30194e0b73a60e4024b474b05a9 https://www.encodeproject.org/files/ENCFF222NHS/@@download/ENCFF222NHS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF735FHH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF222NHS 756816 ENCODE Processing Pipeline 85328ef895c58f584c8d9ef64f3f11ee https://www.encodeproject.org/files/ENCFF735FHH/@@download/ENCFF735FHH.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF952QGO bigWig fold change over control ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF459TVC 211667684 ENCODE Processing Pipeline 200ea559b4a749fb5f0950e621e63304 https://www.encodeproject.org/files/ENCFF952QGO/@@download/ENCFF952QGO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF003ZBX bigWig signal p-value ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF459TVC 290350434 ENCODE Processing Pipeline 758a68b532589024eac6f47946059282 https://www.encodeproject.org/files/ENCFF003ZBX/@@download/ENCFF003ZBX.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF920HAM bigWig signal p-value ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF459TVC, ENCFF803DFL 331485006 ENCODE Processing Pipeline 01977003a194bd8980c57f482a6bfa3b https://www.encodeproject.org/files/ENCFF920HAM/@@download/ENCFF920HAM.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF950VPU bigWig signal p-value ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF803DFL 358400122 ENCODE Processing Pipeline 4b9d2ee763a7ffea3c8bd922896c680e https://www.encodeproject.org/files/ENCFF950VPU/@@download/ENCFF950VPU.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF442ANB bigWig fold change over control ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF803DFL 335629420 ENCODE Processing Pipeline b22877cb6815ae34ec991395c891e337 https://www.encodeproject.org/files/ENCFF442ANB/@@download/ENCFF442ANB.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF413KSB bigWig fold change over control ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF459TVC, ENCFF803DFL 483466928 ENCODE Processing Pipeline 0c33c262e5e93a7f1b0a5f2a2ab31d75 https://www.encodeproject.org/files/ENCFF413KSB/@@download/ENCFF413KSB.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF948QTU bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF459TVC 4070956 ENCODE Processing Pipeline 381967f3e371591f8b995b692e8faca9 https://www.encodeproject.org/files/ENCFF948QTU/@@download/ENCFF948QTU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF569NZY bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF803DFL 5184257 ENCODE Processing Pipeline da68896677a75e619ff62fd81a6fafa3 https://www.encodeproject.org/files/ENCFF569NZY/@@download/ENCFF569NZY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF439JGN bigBed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948QTU 9682128 ENCODE Processing Pipeline 50c98e88d5d9af16b109dc4d1246180b https://www.encodeproject.org/files/ENCFF439JGN/@@download/ENCFF439JGN.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF906RFI bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF459TVC, ENCFF803DFL 5756637 ENCODE Processing Pipeline 67024f93caf4d92d82bddd85842c71c4 https://www.encodeproject.org/files/ENCFF906RFI/@@download/ENCFF906RFI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF669WJG bigBed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF569NZY 12848262 ENCODE Processing Pipeline 7c49c279fb89d93b4c095708e401bdfc https://www.encodeproject.org/files/ENCFF669WJG/@@download/ENCFF669WJG.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF918MCW bigBed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF906RFI 13192715 ENCODE Processing Pipeline 2c340082cf87101ef7e2ca3b6452aa7f https://www.encodeproject.org/files/ENCFF918MCW/@@download/ENCFF918MCW.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF786HHN bed narrowPeak optimal idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF569NZY, ENCFF906RFI, ENCFF948QTU 400997 ENCODE Processing Pipeline 7db723d04c4e48121eda5729cde709e7 https://www.encodeproject.org/files/ENCFF786HHN/@@download/ENCFF786HHN.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF588MIJ bed narrowPeak conservative idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF569NZY, ENCFF906RFI, ENCFF948QTU 320272 ENCODE Processing Pipeline 01d54adc9e4de97125a6acbb1fc02dc6 https://www.encodeproject.org/files/ENCFF588MIJ/@@download/ENCFF588MIJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF118IIH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF588MIJ 763185 ENCODE Processing Pipeline 8b43e085f1b5accf45b17862c0ff5d38 https://www.encodeproject.org/files/ENCFF118IIH/@@download/ENCFF118IIH.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF730HCJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF786HHN 904054 ENCODE Processing Pipeline ff9df8077d81f66c69ac2a4305d1151a https://www.encodeproject.org/files/ENCFF730HCJ/@@download/ENCFF730HCJ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF063UGX fastq reads ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF442NIG 2637054394 Michael Snyder, Stanford 0f26f5f2bbf8e72408633ffe2aa14f6b SRA:SRR6212600 https://www.encodeproject.org/files/ENCFF063UGX/@@download/ENCFF063UGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF304UHL fastq reads ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF449JTR 2376815016 Michael Snyder, Stanford 9fb1772cc221a881d3ceb3bd651b255b SRA:SRR6212601 https://www.encodeproject.org/files/ENCFF304UHL/@@download/ENCFF304UHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF442NIG fastq reads ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF063UGX 2710732645 Michael Snyder, Stanford e05edd8fa795d10fc4dbedaee88f4c8c SRA:SRR6212600 https://www.encodeproject.org/files/ENCFF442NIG/@@download/ENCFF442NIG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF449JTR fastq reads ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF304UHL 2432387144 Michael Snyder, Stanford 7953b8b0857a8ef0f2f44a5a6a2b17bc SRA:SRR6212601 https://www.encodeproject.org/files/ENCFF449JTR/@@download/ENCFF449JTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF286OXL bam unfiltered alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF304UHL, ENCFF449JTR, ENCFF643CGH 5002943977 ENCODE Processing Pipeline 0179b286ae7e7261fae58eb54ee1498f https://www.encodeproject.org/files/ENCFF286OXL/@@download/ENCFF286OXL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF687SRD bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF304UHL, ENCFF449JTR, ENCFF643CGH 4166807868 ENCODE Processing Pipeline 9cedcfb293cd05dc07b6adcb41c301db https://www.encodeproject.org/files/ENCFF687SRD/@@download/ENCFF687SRD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF584UQC bam unfiltered alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF304UHL, ENCFF449JTR, ENCFF807MUK 4996197059 ENCODE Processing Pipeline 609c03439df2aae4946a452f509b2600 https://www.encodeproject.org/files/ENCFF584UQC/@@download/ENCFF584UQC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF010ZJB bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF304UHL, ENCFF449JTR, ENCFF807MUK 4164070461 ENCODE Processing Pipeline 3900005126e82daf3ec2667e20fe7fb3 https://www.encodeproject.org/files/ENCFF010ZJB/@@download/ENCFF010ZJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF888JLN bam unfiltered alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF063UGX, ENCFF442NIG, ENCFF807MUK 5521643442 ENCODE Processing Pipeline 3be51614f291dffc81b9c47e0a23b567 https://www.encodeproject.org/files/ENCFF888JLN/@@download/ENCFF888JLN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF030JHL bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF063UGX, ENCFF442NIG, ENCFF807MUK 4585933192 ENCODE Processing Pipeline d7ff452f4a57330cd39a55d644efb211 https://www.encodeproject.org/files/ENCFF030JHL/@@download/ENCFF030JHL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF102XAE bam unfiltered alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF063UGX, ENCFF442NIG, ENCFF643CGH 5529261075 ENCODE Processing Pipeline b412829a10d355c59729feb8467d4dac https://www.encodeproject.org/files/ENCFF102XAE/@@download/ENCFF102XAE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF890NVN bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF063UGX, ENCFF442NIG, ENCFF643CGH 4588710104 ENCODE Processing Pipeline af7ab54595752ab1892755630a6d3a3a https://www.encodeproject.org/files/ENCFF890NVN/@@download/ENCFF890NVN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF044QLD bigWig signal p-value ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF030JHL 1363178392 ENCODE Processing Pipeline 405ef165c0354dae4b1d5da06a1ca188 https://www.encodeproject.org/files/ENCFF044QLD/@@download/ENCFF044QLD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF824YDL bigWig signal p-value ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF010ZJB 1370369536 ENCODE Processing Pipeline cf465292971c57c18e11f14fe1f3d7bc https://www.encodeproject.org/files/ENCFF824YDL/@@download/ENCFF824YDL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF048PRV bigWig fold change over control ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF010ZJB, ENCFF030JHL 1886584885 ENCODE Processing Pipeline 5686f0c3ed8b32ed65fc0bfd9086be55 https://www.encodeproject.org/files/ENCFF048PRV/@@download/ENCFF048PRV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF916ZFW bigWig fold change over control ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF010ZJB 1260932118 ENCODE Processing Pipeline c1d3c0fb4c54e8be9d3b943d9216a8d4 https://www.encodeproject.org/files/ENCFF916ZFW/@@download/ENCFF916ZFW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF630YVU bigWig signal p-value ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF010ZJB, ENCFF030JHL 1742977626 ENCODE Processing Pipeline 2f9292483510606e7427d7423f01e0a0 https://www.encodeproject.org/files/ENCFF630YVU/@@download/ENCFF630YVU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF320ICJ bigWig fold change over control ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF030JHL 1374867836 ENCODE Processing Pipeline d61d73107c197b9de90dffe45faeb607 https://www.encodeproject.org/files/ENCFF320ICJ/@@download/ENCFF320ICJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF915CHI bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF010ZJB 6400035 ENCODE Processing Pipeline 69934270b96944115e708f4cdaf8789c https://www.encodeproject.org/files/ENCFF915CHI/@@download/ENCFF915CHI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF065GKH bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF030JHL 6541850 ENCODE Processing Pipeline 3dce3d1bf4bf770878ef161b7431a898 https://www.encodeproject.org/files/ENCFF065GKH/@@download/ENCFF065GKH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF720IHI bigBed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF915CHI 11231413 ENCODE Processing Pipeline a68967bfb0ab1fc4eb5acb4906cb5c23 https://www.encodeproject.org/files/ENCFF720IHI/@@download/ENCFF720IHI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF856LJI bed narrowPeak optimal idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF065GKH, ENCFF149KQE, ENCFF915CHI 25011 ENCODE Processing Pipeline 230cf7f8d6432a55c282d40c89340675 https://www.encodeproject.org/files/ENCFF856LJI/@@download/ENCFF856LJI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF149KQE bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF010ZJB, ENCFF030JHL 7046456 ENCODE Processing Pipeline 98742ca16cd2e4b658c767cd5b37fcce https://www.encodeproject.org/files/ENCFF149KQE/@@download/ENCFF149KQE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF374AXY bigBed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF065GKH 11176071 ENCODE Processing Pipeline e1c4c04479ee0396a796be4424239157 https://www.encodeproject.org/files/ENCFF374AXY/@@download/ENCFF374AXY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF313CYH bigBed narrowPeak conservative idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF402YMV 86161 ENCODE Processing Pipeline cc477c3373bbd4999e67cba9bbe53049 https://www.encodeproject.org/files/ENCFF313CYH/@@download/ENCFF313CYH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF741XYY bigBed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF149KQE 10987410 ENCODE Processing Pipeline 66e5bfc2e75c0d1248098bd4ac17b92c https://www.encodeproject.org/files/ENCFF741XYY/@@download/ENCFF741XYY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF402YMV bed narrowPeak conservative idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF065GKH, ENCFF149KQE, ENCFF915CHI 15122 ENCODE Processing Pipeline b2dbab49464c71a89980c7fcb348e295 https://www.encodeproject.org/files/ENCFF402YMV/@@download/ENCFF402YMV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF758DKV bigBed narrowPeak optimal idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF856LJI 105165 ENCODE Processing Pipeline 785b0b21e2cc7f7ac2a7c50d46e43ba1 https://www.encodeproject.org/files/ENCFF758DKV/@@download/ENCFF758DKV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF035JXT bigWig signal p-value ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890NVN 1338434043 ENCODE Processing Pipeline 097eba88c0fa59080a47459bd5703cf2 https://www.encodeproject.org/files/ENCFF035JXT/@@download/ENCFF035JXT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF313KAW bigWig signal p-value ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF687SRD 1196375267 ENCODE Processing Pipeline 7472a3aa2c3c7c79d24237cce2f6049b https://www.encodeproject.org/files/ENCFF313KAW/@@download/ENCFF313KAW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF574VFU bigWig signal p-value ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF687SRD, ENCFF890NVN 1487786444 ENCODE Processing Pipeline d537088ee8771bd1a3ebc7cbb2777a8f https://www.encodeproject.org/files/ENCFF574VFU/@@download/ENCFF574VFU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF559SUL bigWig fold change over control ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF687SRD 1266646662 ENCODE Processing Pipeline fec4456a78ba9d0bbea618e161e69ed5 https://www.encodeproject.org/files/ENCFF559SUL/@@download/ENCFF559SUL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF763QNN bigWig fold change over control ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890NVN 1387005144 ENCODE Processing Pipeline 87f015ec0071a2847493135e9aa65fd7 https://www.encodeproject.org/files/ENCFF763QNN/@@download/ENCFF763QNN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF215RRO bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890NVN 6541258 ENCODE Processing Pipeline 78b3ed3a46287b121489abad360a363f https://www.encodeproject.org/files/ENCFF215RRO/@@download/ENCFF215RRO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF846KWM bigBed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF215RRO 11189171 ENCODE Processing Pipeline 7679f0d27ba362e1d0baa6583e45fb0e https://www.encodeproject.org/files/ENCFF846KWM/@@download/ENCFF846KWM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF221YHE bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF687SRD 6399139 ENCODE Processing Pipeline f59ae5dcf61d3c28cf7998ef7340d02a https://www.encodeproject.org/files/ENCFF221YHE/@@download/ENCFF221YHE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF993HZN bigWig fold change over control ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF687SRD, ENCFF890NVN 1875783245 ENCODE Processing Pipeline b02b9a8c389279fd963b6927ffdc7a5f https://www.encodeproject.org/files/ENCFF993HZN/@@download/ENCFF993HZN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF138DFB bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF687SRD, ENCFF890NVN 7049320 ENCODE Processing Pipeline a93a04f5e74610f0147f20c49444c205 https://www.encodeproject.org/files/ENCFF138DFB/@@download/ENCFF138DFB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF130AIB bigBed narrowPeak optimal idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF120CMN 110811 ENCODE Processing Pipeline 7eb0a30d8314db5da01f4d3f46f9717d https://www.encodeproject.org/files/ENCFF130AIB/@@download/ENCFF130AIB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF126CIA bed narrowPeak conservative idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF138DFB, ENCFF215RRO, ENCFF221YHE, ENCFF419RSJ 15816 ENCODE Processing Pipeline 45b20f5909c80b66ac4c148585a8cf40 https://www.encodeproject.org/files/ENCFF126CIA/@@download/ENCFF126CIA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF363UZG bigBed narrowPeak conservative idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF126CIA 88222 ENCODE Processing Pipeline 85c213873bfe5c92c89ed55dbf38897a https://www.encodeproject.org/files/ENCFF363UZG/@@download/ENCFF363UZG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF029MTZ bigBed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF221YHE 11244340 ENCODE Processing Pipeline fbc93db0d94f01741c6a18aaa37a9ce8 https://www.encodeproject.org/files/ENCFF029MTZ/@@download/ENCFF029MTZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF553WUF bigBed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF138DFB 10996349 ENCODE Processing Pipeline 7abb895ffd236d107376a02342fe2873 https://www.encodeproject.org/files/ENCFF553WUF/@@download/ENCFF553WUF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF120CMN bed narrowPeak optimal idr thresholded peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF138DFB, ENCFF215RRO, ENCFF221YHE, ENCFF419RSJ 27589 ENCODE Processing Pipeline 5b6a0535977e4312008e364575c2deb0 https://www.encodeproject.org/files/ENCFF120CMN/@@download/ENCFF120CMN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF025PPV fastq reads ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF472OCU 1533183202 Michael Snyder, Stanford 1d1877913c229fc8e1dd47918dc3be8f SRA:SRR6213016 https://www.encodeproject.org/files/ENCFF025PPV/@@download/ENCFF025PPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF472OCU fastq reads ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF025PPV 1591918805 Michael Snyder, Stanford 43803aacd5b3ff14cc17b8280d04ae27 SRA:SRR6213016 https://www.encodeproject.org/files/ENCFF472OCU/@@download/ENCFF472OCU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF960PEV bam unfiltered alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF025PPV, ENCFF472OCU, ENCFF643CGH 3505093188 ENCODE Processing Pipeline 5749d1dbe5fc941712659badabd74910 https://www.encodeproject.org/files/ENCFF960PEV/@@download/ENCFF960PEV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF344DOB bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF025PPV, ENCFF472OCU, ENCFF643CGH 2701515041 ENCODE Processing Pipeline 6f5e1feba2384f2b45bf1a864194fea4 https://www.encodeproject.org/files/ENCFF344DOB/@@download/ENCFF344DOB.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF775BBV bam unfiltered alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF025PPV, ENCFF472OCU, ENCFF807MUK 3503486813 ENCODE Processing Pipeline 3b3934b8ec3bef0a89396e70a8ee01d8 https://www.encodeproject.org/files/ENCFF775BBV/@@download/ENCFF775BBV.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF289IND bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF025PPV, ENCFF472OCU, ENCFF807MUK 2700745097 ENCODE Processing Pipeline 4a71b0d891086783a6da3930e009424f https://www.encodeproject.org/files/ENCFF289IND/@@download/ENCFF289IND.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF535FKI bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 1115234464 ENCODE Processing Pipeline 5a6d41360522d1bcd8edc41b382b0a50 https://www.encodeproject.org/files/ENCFF535FKI/@@download/ENCFF535FKI.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF562FQB bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 1070221708 ENCODE Processing Pipeline ee1ba24711ee9f2d667c247817e4b5f6 https://www.encodeproject.org/files/ENCFF562FQB/@@download/ENCFF562FQB.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF767UEC bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 6084119 ENCODE Processing Pipeline e1de96b8aea19c3c406a8801326c202e https://www.encodeproject.org/files/ENCFF767UEC/@@download/ENCFF767UEC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF978HCD bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF767UEC 11407912 ENCODE Processing Pipeline ae3d18126d6d564e594511f516b2c3ea https://www.encodeproject.org/files/ENCFF978HCD/@@download/ENCFF978HCD.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF517YVY bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF344DOB 1236781262 ENCODE Processing Pipeline 712dc82df6a569de782b8681f45ce785 https://www.encodeproject.org/files/ENCFF517YVY/@@download/ENCFF517YVY.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF342CHS bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF344DOB 1056941021 ENCODE Processing Pipeline 5f231de5313a9f2c4fa079fb023c6285 https://www.encodeproject.org/files/ENCFF342CHS/@@download/ENCFF342CHS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF906VQM bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF344DOB 5962974 ENCODE Processing Pipeline f3bbffd53abeaffacd580fc165b37e93 https://www.encodeproject.org/files/ENCFF906VQM/@@download/ENCFF906VQM.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF322MKV bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF906VQM 11403305 ENCODE Processing Pipeline 43d67bc021fc1d26d4fb175779ba93ca https://www.encodeproject.org/files/ENCFF322MKV/@@download/ENCFF322MKV.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF278MPJ fastq reads ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 1 101 paired-ended 1 ENCFF959SZB 1786323926 Michael Snyder, Stanford 810b3bb54dcde5c687c6c70cf218ebb1 SRA:SRR6213015 https://www.encodeproject.org/files/ENCFF278MPJ/@@download/ENCFF278MPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF959SZB fastq reads ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 1 101 paired-ended 2 ENCFF278MPJ 1842967200 Michael Snyder, Stanford aeb7add581f452d33421bf11d3415457 SRA:SRR6213015 https://www.encodeproject.org/files/ENCFF959SZB/@@download/ENCFF959SZB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF176JFZ bam unfiltered alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 101 ENCFF278MPJ, ENCFF643CGH, ENCFF959SZB 4067482313 ENCODE Processing Pipeline 59dd3e11205380b2da5ffa0d734bc637 https://www.encodeproject.org/files/ENCFF176JFZ/@@download/ENCFF176JFZ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF887YCO bam unfiltered alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 101 ENCFF278MPJ, ENCFF807MUK, ENCFF959SZB 4064841479 ENCODE Processing Pipeline 82bb672e5fa0a0b255009f93aeac9e83 https://www.encodeproject.org/files/ENCFF887YCO/@@download/ENCFF887YCO.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF860NPU bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 101 ENCFF278MPJ, ENCFF807MUK, ENCFF959SZB 3282971057 ENCODE Processing Pipeline ed4a1605b4272f0bd12032648d840a49 https://www.encodeproject.org/files/ENCFF860NPU/@@download/ENCFF860NPU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF366ZYM bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 101 ENCFF278MPJ, ENCFF643CGH, ENCFF959SZB 3284354532 ENCODE Processing Pipeline a164254f4914f714d9f90b6fc47151f8 https://www.encodeproject.org/files/ENCFF366ZYM/@@download/ENCFF366ZYM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF879AGK bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF366ZYM 1096793937 ENCODE Processing Pipeline 71892bb50e52c8c54bec07317df7b2f6 https://www.encodeproject.org/files/ENCFF879AGK/@@download/ENCFF879AGK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF322EMJ bed narrowPeak conservative idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF267XIN, ENCFF419RSJ, ENCFF532RUC, ENCFF906VQM 132296 ENCODE Processing Pipeline a849413e5611042e211b08f913bfd181 https://www.encodeproject.org/files/ENCFF322EMJ/@@download/ENCFF322EMJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF956OKZ bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF344DOB, ENCFF366ZYM 1296926338 ENCODE Processing Pipeline 048432fe3d5c63dedd241ab79e10ba52 https://www.encodeproject.org/files/ENCFF956OKZ/@@download/ENCFF956OKZ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF059PDY bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF366ZYM 1222575407 ENCODE Processing Pipeline 06b8b47fdfc4106321dde71eec245868 https://www.encodeproject.org/files/ENCFF059PDY/@@download/ENCFF059PDY.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF327AKS bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF344DOB, ENCFF366ZYM 1637686508 ENCODE Processing Pipeline 9e93609776e7f6fc3d172a6e5ea27131 https://www.encodeproject.org/files/ENCFF327AKS/@@download/ENCFF327AKS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF532RUC bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF366ZYM 6072248 ENCODE Processing Pipeline 9b2f3bda3a6bcaf30ff2bc6527715e18 https://www.encodeproject.org/files/ENCFF532RUC/@@download/ENCFF532RUC.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF267XIN bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF344DOB, ENCFF366ZYM 6738871 ENCODE Processing Pipeline a404250a1ad54bb5a4ad23d35ddf999f https://www.encodeproject.org/files/ENCFF267XIN/@@download/ENCFF267XIN.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF668JTF bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF532RUC 11375903 ENCODE Processing Pipeline 19f61b10f0416749e1511392b99de7d4 https://www.encodeproject.org/files/ENCFF668JTF/@@download/ENCFF668JTF.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF328UXH bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF267XIN 11114693 ENCODE Processing Pipeline cd15a727fd520c9bbc2676f1664238cb https://www.encodeproject.org/files/ENCFF328UXH/@@download/ENCFF328UXH.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF068MGI bigBed narrowPeak conservative idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF322EMJ 295447 ENCODE Processing Pipeline 27c5cb6bb27246d7e78dba2f496a7e20 https://www.encodeproject.org/files/ENCFF068MGI/@@download/ENCFF068MGI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF119KFD bed narrowPeak optimal idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF267XIN, ENCFF419RSJ, ENCFF532RUC, ENCFF906VQM 137714 ENCODE Processing Pipeline c90a522367190941785da08ec13319a6 https://www.encodeproject.org/files/ENCFF119KFD/@@download/ENCFF119KFD.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF439OXD bigBed narrowPeak optimal idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF119KFD 302041 ENCODE Processing Pipeline 56661c65b8abfe6235bdc3fe3fb89861 https://www.encodeproject.org/files/ENCFF439OXD/@@download/ENCFF439OXD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF374JHY bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF289IND, ENCFF860NPU 1512240511 ENCODE Processing Pipeline 2ed3c1a3d765eb089ee3d1d3ad19ba69 https://www.encodeproject.org/files/ENCFF374JHY/@@download/ENCFF374JHY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF224QXN bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF860NPU 6071502 ENCODE Processing Pipeline 86e3cdf6aaff294e31b73f91fb54e432 https://www.encodeproject.org/files/ENCFF224QXN/@@download/ENCFF224QXN.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF165QWQ bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF224QXN 11361531 ENCODE Processing Pipeline fd8724ca39ff8fdaac4bdf68d4570947 https://www.encodeproject.org/files/ENCFF165QWQ/@@download/ENCFF165QWQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF376RSF bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF299LMQ 11135427 ENCODE Processing Pipeline 8496aa0373e5c9fc5268f71ca83e9ada https://www.encodeproject.org/files/ENCFF376RSF/@@download/ENCFF376RSF.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF463LEK bigBed narrowPeak optimal idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF753EBJ 299544 ENCODE Processing Pipeline 678aa9c71da066254f34a0d2e31ded3d https://www.encodeproject.org/files/ENCFF463LEK/@@download/ENCFF463LEK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF017OSE bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 1108618143 ENCODE Processing Pipeline ba73a25cff0c55aae915b5783216e69c https://www.encodeproject.org/files/ENCFF017OSE/@@download/ENCFF017OSE.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF280PCU bigWig signal p-value ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF860NPU 1245691731 ENCODE Processing Pipeline 1d639c970c6fd1ef16a48ff0a430c415 https://www.encodeproject.org/files/ENCFF280PCU/@@download/ENCFF280PCU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF528ASA bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 1062491726 ENCODE Processing Pipeline eb88e64a07e640a72987b1db328550bb https://www.encodeproject.org/files/ENCFF528ASA/@@download/ENCFF528ASA.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF299LMQ bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF289IND, ENCFF860NPU 6742015 ENCODE Processing Pipeline 15cef315dd3e33994f455dba9a4101e1 https://www.encodeproject.org/files/ENCFF299LMQ/@@download/ENCFF299LMQ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF753EBJ bed narrowPeak optimal idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF001TDO, ENCFF078NCC, ENCFF224QXN, ENCFF299LMQ 137054 ENCODE Processing Pipeline 94fd9b120d1db7ed4aa7307de329e4ca https://www.encodeproject.org/files/ENCFF753EBJ/@@download/ENCFF753EBJ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF960FWH bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF289IND, ENCFF860NPU 1663821509 ENCODE Processing Pipeline 4ef40f1c8f2f897ae2a72f8b7df74a4b https://www.encodeproject.org/files/ENCFF960FWH/@@download/ENCFF960FWH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF216LRG bigWig fold change over control ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 ENCFF860NPU 1222330953 ENCODE Processing Pipeline 6ff8dcc2e990e0c284f89cbca9f2f9c8 https://www.encodeproject.org/files/ENCFF216LRG/@@download/ENCFF216LRG.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF078NCC bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 5972092 ENCODE Processing Pipeline c584bf65497f169056ed8557416c4d71 https://www.encodeproject.org/files/ENCFF078NCC/@@download/ENCFF078NCC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF986HOE bigBed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF078NCC 11394830 ENCODE Processing Pipeline 853eaf25eb2cb363cf9111fe47954dd4 https://www.encodeproject.org/files/ENCFF986HOE/@@download/ENCFF986HOE.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF460QAE bed narrowPeak conservative idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF001TDO, ENCFF078NCC, ENCFF224QXN, ENCFF299LMQ 131803 ENCODE Processing Pipeline 616432c01e8bcd8b4487e1803ba7aed0 https://www.encodeproject.org/files/ENCFF460QAE/@@download/ENCFF460QAE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF638RER bigBed narrowPeak conservative idr thresholded peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2, 3 ENCFF460QAE 292442 ENCODE Processing Pipeline 11a1913703457d1a77c177f6a18b9cf2 https://www.encodeproject.org/files/ENCFF638RER/@@download/ENCFF638RER.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF180QIL fastq reads ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF374YOG 2048770984 Michael Snyder, Stanford 9dfd7144a603e4af8cd71f5e5f25f4b5 SRA:SRR5112099 https://www.encodeproject.org/files/ENCFF180QIL/@@download/ENCFF180QIL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF931JHV fastq reads ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF835OOH 1560678926 Michael Snyder, Stanford c3ee1d72886f20925b0feb896c0f2f44 SRA:SRR5112098 https://www.encodeproject.org/files/ENCFF931JHV/@@download/ENCFF931JHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF835OOH fastq reads ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF931JHV 1637488240 Michael Snyder, Stanford df7c798809fb2ab156f1fa1a2a4cb39b SRA:SRR5112098 https://www.encodeproject.org/files/ENCFF835OOH/@@download/ENCFF835OOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF374YOG fastq reads ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF180QIL 2135257039 Michael Snyder, Stanford c70bd068bdbb44e7c13421f50760f58c SRA:SRR5112099 https://www.encodeproject.org/files/ENCFF374YOG/@@download/ENCFF374YOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF813ZSK bam unfiltered alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF835OOH, ENCFF931JHV 3609875091 ENCODE Processing Pipeline ab07fdb0d854c992d3d310a4ba3dab7f https://www.encodeproject.org/files/ENCFF813ZSK/@@download/ENCFF813ZSK.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF168GMP bam unfiltered alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF835OOH, ENCFF931JHV 3612383157 ENCODE Processing Pipeline c7acdcb1d345962806de582693c6df4b https://www.encodeproject.org/files/ENCFF168GMP/@@download/ENCFF168GMP.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF680PJS bam unfiltered alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF180QIL, ENCFF374YOG, ENCFF643CGH 4680521412 ENCODE Processing Pipeline 9a28c5afa81ea8bcaa8950ecfc70244c https://www.encodeproject.org/files/ENCFF680PJS/@@download/ENCFF680PJS.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF777SWW bam unfiltered alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF180QIL, ENCFF374YOG, ENCFF807MUK 4676365991 ENCODE Processing Pipeline 750fd8d63e3a8ac52d639f46bc613804 https://www.encodeproject.org/files/ENCFF777SWW/@@download/ENCFF777SWW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF652SLC bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF835OOH, ENCFF931JHV 2801652025 ENCODE Processing Pipeline af76461d5cd55a2cdb10d67a6ef543ef https://www.encodeproject.org/files/ENCFF652SLC/@@download/ENCFF652SLC.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF894UUJ bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF835OOH, ENCFF931JHV 2800343109 ENCODE Processing Pipeline 455e045c1427b24af139887fffb7f687 https://www.encodeproject.org/files/ENCFF894UUJ/@@download/ENCFF894UUJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF167HRH bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF180QIL, ENCFF374YOG, ENCFF643CGH 3788668422 ENCODE Processing Pipeline 9e60bffeb0082a07199cc971908f20f2 https://www.encodeproject.org/files/ENCFF167HRH/@@download/ENCFF167HRH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF113UPL bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF180QIL, ENCFF374YOG, ENCFF807MUK 3786968287 ENCODE Processing Pipeline ee28aee20373b922fc6c99c72b645165 https://www.encodeproject.org/files/ENCFF113UPL/@@download/ENCFF113UPL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF893PNN bigWig signal p-value ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF113UPL 1278034066 ENCODE Processing Pipeline c82d9bee3f6b071bbcfd72c69ad07f0b https://www.encodeproject.org/files/ENCFF893PNN/@@download/ENCFF893PNN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF733WWK bigWig signal p-value ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF894UUJ 1039302804 ENCODE Processing Pipeline 50ddffa71b80b1b90ae2ca06b830c8cd https://www.encodeproject.org/files/ENCFF733WWK/@@download/ENCFF733WWK.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF141CVN bigWig signal p-value ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF113UPL, ENCFF894UUJ 1557096562 ENCODE Processing Pipeline 0a8ac4f70b10e67658227958f7e21efa https://www.encodeproject.org/files/ENCFF141CVN/@@download/ENCFF141CVN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF223WAN bigWig fold change over control ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF113UPL 1294528269 ENCODE Processing Pipeline 48b556a78d190cbfa045e5e21b408eeb https://www.encodeproject.org/files/ENCFF223WAN/@@download/ENCFF223WAN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF670EAT bigWig fold change over control ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF894UUJ 1061946770 ENCODE Processing Pipeline 73f071c4a60af0cb97e7055e0ea33e0d https://www.encodeproject.org/files/ENCFF670EAT/@@download/ENCFF670EAT.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF797WGK bigWig fold change over control ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF113UPL, ENCFF894UUJ 1692285522 ENCODE Processing Pipeline 8df667ea699b02a8730e65fade85af7c https://www.encodeproject.org/files/ENCFF797WGK/@@download/ENCFF797WGK.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF471VMQ bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF113UPL, ENCFF894UUJ 6918282 ENCODE Processing Pipeline 11ea6bfd9c9d0c4556fdf5846d9b1953 https://www.encodeproject.org/files/ENCFF471VMQ/@@download/ENCFF471VMQ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF455FQT bigBed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF146KHO 11410110 ENCODE Processing Pipeline 8ef34d57f6bcc960ba0098d29f5a2584 https://www.encodeproject.org/files/ENCFF455FQT/@@download/ENCFF455FQT.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF146KHO bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF113UPL 6468966 ENCODE Processing Pipeline cd520d74237ca29e463379a7c2efa7d1 https://www.encodeproject.org/files/ENCFF146KHO/@@download/ENCFF146KHO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF489FNP bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF894UUJ 5962219 ENCODE Processing Pipeline 9a04c9281a0893a0335833d323a82929 https://www.encodeproject.org/files/ENCFF489FNP/@@download/ENCFF489FNP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF861SFK bigBed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF489FNP 11428417 ENCODE Processing Pipeline 05702ca01b9d0b818e27374b3221d200 https://www.encodeproject.org/files/ENCFF861SFK/@@download/ENCFF861SFK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF410JAH bigBed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF471VMQ 11194971 ENCODE Processing Pipeline 6d40309489a0f318d9f744114dfb739a https://www.encodeproject.org/files/ENCFF410JAH/@@download/ENCFF410JAH.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF506LCO bed narrowPeak optimal idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF146KHO, ENCFF471VMQ, ENCFF489FNP 141384 ENCODE Processing Pipeline 5f1952184920680f81d31c875d493703 https://www.encodeproject.org/files/ENCFF506LCO/@@download/ENCFF506LCO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF990ZGG bed narrowPeak conservative idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF146KHO, ENCFF471VMQ, ENCFF489FNP 134307 ENCODE Processing Pipeline f0ff40d55b6beb6496d8a2820e024934 https://www.encodeproject.org/files/ENCFF990ZGG/@@download/ENCFF990ZGG.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF272BFQ bigBed narrowPeak conservative idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF990ZGG 295243 ENCODE Processing Pipeline c61c9c96270dc72bdcd82c50edbb2fab https://www.encodeproject.org/files/ENCFF272BFQ/@@download/ENCFF272BFQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF070PIA bigBed narrowPeak optimal idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF506LCO 303695 ENCODE Processing Pipeline dbdf5aa3f85170b6ff37336fc814b898 https://www.encodeproject.org/files/ENCFF070PIA/@@download/ENCFF070PIA.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF535OMF bigWig signal p-value ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652SLC 1067910283 ENCODE Processing Pipeline 4d1544df3b05668d8d632c5abadd8a2f https://www.encodeproject.org/files/ENCFF535OMF/@@download/ENCFF535OMF.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF426GFG bigWig signal p-value ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF167HRH 1109563376 ENCODE Processing Pipeline 614b6aa0ff31b2cb2008fcfdb82f6282 https://www.encodeproject.org/files/ENCFF426GFG/@@download/ENCFF426GFG.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF540BSV bigWig fold change over control ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF167HRH 1271715878 ENCODE Processing Pipeline 13b14ee9a662e175713bb97a4954b190 https://www.encodeproject.org/files/ENCFF540BSV/@@download/ENCFF540BSV.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF781NPI bigWig signal p-value ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF167HRH, ENCFF652SLC 1505962198 ENCODE Processing Pipeline 3bef813b0e91dd8c9240f480fb3b3d15 https://www.encodeproject.org/files/ENCFF781NPI/@@download/ENCFF781NPI.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF617HFO bigWig fold change over control ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652SLC 1082301944 ENCODE Processing Pipeline f4da418902a1a8e5c313a335466aa241 https://www.encodeproject.org/files/ENCFF617HFO/@@download/ENCFF617HFO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF994SQI bigWig fold change over control ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF167HRH, ENCFF652SLC 1708835191 ENCODE Processing Pipeline 87004e956ee6cc84d32f926034908009 https://www.encodeproject.org/files/ENCFF994SQI/@@download/ENCFF994SQI.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF539IZU bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF167HRH 6306786 ENCODE Processing Pipeline fd9a3e50592d10a480175a842af64fcb https://www.encodeproject.org/files/ENCFF539IZU/@@download/ENCFF539IZU.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF240RWH bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF167HRH, ENCFF652SLC 6804245 ENCODE Processing Pipeline 4ea78bb0f09df86bab7a03ab8fc7fb04 https://www.encodeproject.org/files/ENCFF240RWH/@@download/ENCFF240RWH.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF932TUP bigBed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF240RWH 11212823 ENCODE Processing Pipeline 9e92da0e4bffb3ad32c62a34d540bb47 https://www.encodeproject.org/files/ENCFF932TUP/@@download/ENCFF932TUP.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF012UYW bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652SLC 5860895 ENCODE Processing Pipeline 0bc0b2f486058e72dbb243c388542941 https://www.encodeproject.org/files/ENCFF012UYW/@@download/ENCFF012UYW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF094RMM bigBed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF012UYW 11433894 ENCODE Processing Pipeline cbca31f55346f04ce88d9ebd649e1acd https://www.encodeproject.org/files/ENCFF094RMM/@@download/ENCFF094RMM.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF123UCK bigBed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF539IZU 11412047 ENCODE Processing Pipeline 775e1f91c49d785f2b48c6159d4fd2db https://www.encodeproject.org/files/ENCFF123UCK/@@download/ENCFF123UCK.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF829LTI bigBed narrowPeak conservative idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF087JFS 298599 ENCODE Processing Pipeline 781d14e568682bca0d2a6f3c76bf5e24 https://www.encodeproject.org/files/ENCFF829LTI/@@download/ENCFF829LTI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF087JFS bed narrowPeak conservative idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF012UYW, ENCFF240RWH, ENCFF419RSJ, ENCFF539IZU 135276 ENCODE Processing Pipeline f591baa38f72729df812545a3279b4c2 https://www.encodeproject.org/files/ENCFF087JFS/@@download/ENCFF087JFS.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF505RYR bed narrowPeak optimal idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF012UYW, ENCFF240RWH, ENCFF419RSJ, ENCFF539IZU 147500 ENCODE Processing Pipeline 65560c59298102f8cd28486810972196 https://www.encodeproject.org/files/ENCFF505RYR/@@download/ENCFF505RYR.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF731EKF bigBed narrowPeak optimal idr thresholded peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF505RYR 313867 ENCODE Processing Pipeline 9b652098591ea0044e372fb1b02c7309 https://www.encodeproject.org/files/ENCFF731EKF/@@download/ENCFF731EKF.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF020ZFY bam unfiltered alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF187CTD, ENCFF300NMV, ENCFF807MUK 4227744608 ENCODE Processing Pipeline 1b6d20d2c7b71b38b0719fb2f7766b02 https://www.encodeproject.org/files/ENCFF020ZFY/@@download/ENCFF020ZFY.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF901FMU bam unfiltered alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF124FJO, ENCFF497YJP, ENCFF807MUK 4895195112 ENCODE Processing Pipeline 9c3fcb89095a6b1d8ac272822a9f203c https://www.encodeproject.org/files/ENCFF901FMU/@@download/ENCFF901FMU.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF124FJO fastq reads ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF497YJP 2175139550 Michael Snyder, Stanford 2de266a5d5426e727b1b73f609ec3e88 https://www.encodeproject.org/files/ENCFF124FJO/@@download/ENCFF124FJO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF497YJP fastq reads ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF124FJO 2275160922 Michael Snyder, Stanford ca968b5a7d63eae45c3e7dc80e7bcdd0 https://www.encodeproject.org/files/ENCFF497YJP/@@download/ENCFF497YJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF300NMV fastq reads ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF187CTD 1886759666 Michael Snyder, Stanford 5efcfa51a7d31804957ac0f4bd452f85 https://www.encodeproject.org/files/ENCFF300NMV/@@download/ENCFF300NMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF187CTD fastq reads ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF300NMV 1954169045 Michael Snyder, Stanford 4bf0d45236bdf88de4fe65a12ec53ac8 https://www.encodeproject.org/files/ENCFF187CTD/@@download/ENCFF187CTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF856OQX bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF124FJO, ENCFF497YJP, ENCFF807MUK 3897433966 ENCODE Processing Pipeline 1a0989f35386737443f0145873e0674a https://www.encodeproject.org/files/ENCFF856OQX/@@download/ENCFF856OQX.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF930YAS bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF187CTD, ENCFF300NMV, ENCFF807MUK 3371473135 ENCODE Processing Pipeline af563575e9e0191e2a46c6a225013d18 https://www.encodeproject.org/files/ENCFF930YAS/@@download/ENCFF930YAS.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF371BSX bigWig signal p-value ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF930YAS 941302593 ENCODE Processing Pipeline 68c9296d1ef3df79610a2c5cffde1943 https://www.encodeproject.org/files/ENCFF371BSX/@@download/ENCFF371BSX.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF212SJK bigWig signal p-value ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF856OQX 1145744188 ENCODE Processing Pipeline 7a76005abb0c62d81f69d2f6e98cabea https://www.encodeproject.org/files/ENCFF212SJK/@@download/ENCFF212SJK.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF926CYS bigWig signal p-value ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF856OQX, ENCFF930YAS 1821323853 ENCODE Processing Pipeline 934741981de875572fc7662d7bf4d192 https://www.encodeproject.org/files/ENCFF926CYS/@@download/ENCFF926CYS.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF327UGX bigWig fold change over control ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF930YAS 1085051776 ENCODE Processing Pipeline acb470ca2f83dc9a881a7a455e3ad442 https://www.encodeproject.org/files/ENCFF327UGX/@@download/ENCFF327UGX.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF394RZH bigWig fold change over control ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF856OQX 1126078573 ENCODE Processing Pipeline 4edbe83e4d8cc6b6f2992ba13d59a078 https://www.encodeproject.org/files/ENCFF394RZH/@@download/ENCFF394RZH.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF365YDY bigWig fold change over control ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF856OQX, ENCFF930YAS 2038759947 ENCODE Processing Pipeline 11c2ec51d4dda565f64c934f57d2a4bc https://www.encodeproject.org/files/ENCFF365YDY/@@download/ENCFF365YDY.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF225XFM bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF856OQX 6626416 ENCODE Processing Pipeline c669b72e356bca13d4f5c5effb5be7e1 https://www.encodeproject.org/files/ENCFF225XFM/@@download/ENCFF225XFM.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF207WQF bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF856OQX, ENCFF930YAS 7200356 ENCODE Processing Pipeline 4db7e68cb8bfb15ee5660bf09956c8b5 https://www.encodeproject.org/files/ENCFF207WQF/@@download/ENCFF207WQF.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF204SBR bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF930YAS 6487472 ENCODE Processing Pipeline 1f5cc501e5ab23f31a2431cf6090cec3 https://www.encodeproject.org/files/ENCFF204SBR/@@download/ENCFF204SBR.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF716OSY bigBed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF204SBR 13331233 ENCODE Processing Pipeline a52aefdbfb99cd4a70fa180a89ec655f https://www.encodeproject.org/files/ENCFF716OSY/@@download/ENCFF716OSY.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF456PTX bigBed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF207WQF 13210540 ENCODE Processing Pipeline f5b608b00bfc340fce44d08d98b09a0a https://www.encodeproject.org/files/ENCFF456PTX/@@download/ENCFF456PTX.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF936KBX bigBed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF225XFM 13344493 ENCODE Processing Pipeline 5df4749a7b333e3e7d82cc1b57e3b694 https://www.encodeproject.org/files/ENCFF936KBX/@@download/ENCFF936KBX.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF944TSJ bigBed narrowPeak conservative idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF671CIU 215927 ENCODE Processing Pipeline 8bfc4eb49c83f34c842260ec05e8a863 https://www.encodeproject.org/files/ENCFF944TSJ/@@download/ENCFF944TSJ.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF774SSI bed narrowPeak conservative idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF204SBR, ENCFF207WQF, ENCFF225XFM 86144 ENCODE Processing Pipeline b525e386805672efa4b189c89ad332b8 https://www.encodeproject.org/files/ENCFF774SSI/@@download/ENCFF774SSI.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF284PKK bed narrowPeak optimal idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF204SBR, ENCFF207WQF, ENCFF225XFM 164358 ENCODE Processing Pipeline b9c899f383de2ba7d6944157dbe28386 https://www.encodeproject.org/files/ENCFF284PKK/@@download/ENCFF284PKK.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF301XZE bigBed narrowPeak optimal idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF312FJY 395373 ENCODE Processing Pipeline 4515df64147a9e5be11003a0c40391aa https://www.encodeproject.org/files/ENCFF301XZE/@@download/ENCFF301XZE.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF830YWS bam unfiltered alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF124FJO, ENCFF497YJP, ENCFF643CGH 4897768922 ENCODE Processing Pipeline 4b929920d581be44c7beb09103f35cf0 https://www.encodeproject.org/files/ENCFF830YWS/@@download/ENCFF830YWS.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF682PQT bam unfiltered alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF187CTD, ENCFF300NMV, ENCFF643CGH 4230280929 ENCODE Processing Pipeline c773dcd80c2194c537d163ff9fdb047e https://www.encodeproject.org/files/ENCFF682PQT/@@download/ENCFF682PQT.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF240BDN bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF124FJO, ENCFF497YJP, ENCFF643CGH 3902913952 ENCODE Processing Pipeline 2fb09952da22fa6989dd2d0a86164432 https://www.encodeproject.org/files/ENCFF240BDN/@@download/ENCFF240BDN.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF411KAB bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF187CTD, ENCFF300NMV, ENCFF643CGH 3374550814 ENCODE Processing Pipeline 4c8d2fe47c8a755735584d1efb389284 https://www.encodeproject.org/files/ENCFF411KAB/@@download/ENCFF411KAB.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF419CEW bigWig signal p-value ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF411KAB, ENCFF910IKB 1059178578 ENCODE Processing Pipeline dbf8dd756831e50535aba1762e16f6a2 https://www.encodeproject.org/files/ENCFF419CEW/@@download/ENCFF419CEW.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF215HJT bigWig signal p-value ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF240BDN 945147697 ENCODE Processing Pipeline 79c34009f7b07e29e6f193d11b69ea56 https://www.encodeproject.org/files/ENCFF215HJT/@@download/ENCFF215HJT.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF132DMT bigWig signal p-value ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF240BDN, ENCFF411KAB, ENCFF910IKB 1809277192 ENCODE Processing Pipeline dff428cc58d10adb23722d5cb9f3175a https://www.encodeproject.org/files/ENCFF132DMT/@@download/ENCFF132DMT.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF515ELK bigWig fold change over control ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF411KAB, ENCFF910IKB 1087269730 ENCODE Processing Pipeline e3ee313b080e8e13a8955be1bdc7a52c https://www.encodeproject.org/files/ENCFF515ELK/@@download/ENCFF515ELK.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF326RNB bigWig fold change over control ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF240BDN 1127962807 ENCODE Processing Pipeline 050bd3039f095bb57d97ed1afb002e63 https://www.encodeproject.org/files/ENCFF326RNB/@@download/ENCFF326RNB.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF027NWG bigWig fold change over control ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF240BDN, ENCFF411KAB, ENCFF910IKB 2054337101 ENCODE Processing Pipeline 8bdbadf0823bd9f97452fbb4cf28bcd3 https://www.encodeproject.org/files/ENCFF027NWG/@@download/ENCFF027NWG.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF013CGE bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF411KAB, ENCFF910IKB 6374437 ENCODE Processing Pipeline 5691ae77e2aaa763acbe0d3299b5f78e https://www.encodeproject.org/files/ENCFF013CGE/@@download/ENCFF013CGE.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF485ATS bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF240BDN 6527136 ENCODE Processing Pipeline e16d223c52ff41cbf64fccd7f20973bb https://www.encodeproject.org/files/ENCFF485ATS/@@download/ENCFF485ATS.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF150CHR bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF240BDN, ENCFF411KAB, ENCFF910IKB 7165190 ENCODE Processing Pipeline 2f9d3c68d513f2dfb2860e3a75c9bba4 https://www.encodeproject.org/files/ENCFF150CHR/@@download/ENCFF150CHR.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF981AAH bigBed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF013CGE 13341731 ENCODE Processing Pipeline c7ccb3b2c4ebaa78de0fd0054bbd87b3 https://www.encodeproject.org/files/ENCFF981AAH/@@download/ENCFF981AAH.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF054QTT bigBed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF485ATS 13354568 ENCODE Processing Pipeline 9b3b58fc9b6a305d35a42d4a96bed7b5 https://www.encodeproject.org/files/ENCFF054QTT/@@download/ENCFF054QTT.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF020WGR bigBed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF150CHR 13222546 ENCODE Processing Pipeline e27cd3023565a902a721cf6c6cd64aab https://www.encodeproject.org/files/ENCFF020WGR/@@download/ENCFF020WGR.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF947YGS bed narrowPeak conservative idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF013CGE, ENCFF150CHR, ENCFF419RSJ, ENCFF485ATS 85741 ENCODE Processing Pipeline a9091f6edaaa8ba4579bac3a02e4a16e https://www.encodeproject.org/files/ENCFF947YGS/@@download/ENCFF947YGS.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF224KBA bigBed narrowPeak conservative idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF947YGS 217555 ENCODE Processing Pipeline bd776e8679c10321b9dc26d75d8cb73b https://www.encodeproject.org/files/ENCFF224KBA/@@download/ENCFF224KBA.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF404EVY bed narrowPeak optimal idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF013CGE, ENCFF150CHR, ENCFF419RSJ, ENCFF485ATS 159125 ENCODE Processing Pipeline dd691acc7afd56a46916b5f1200a7c08 https://www.encodeproject.org/files/ENCFF404EVY/@@download/ENCFF404EVY.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF732BRI bigBed narrowPeak optimal idr thresholded peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF404EVY 327044 ENCODE Processing Pipeline b8a5d6225982eb3b2ad41a5e7cfd9a8e https://www.encodeproject.org/files/ENCFF732BRI/@@download/ENCFF732BRI.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF556XCJ fastq reads ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF886VXN 3647872272 Michael Snyder, Stanford 51e6cd383304059c8cf0355603e33d9b https://www.encodeproject.org/files/ENCFF556XCJ/@@download/ENCFF556XCJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF415BMN fastq reads ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF073TIY 3674542744 Michael Snyder, Stanford 588cf4a66b7d7a6f689eb686a3833920 https://www.encodeproject.org/files/ENCFF415BMN/@@download/ENCFF415BMN.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF886VXN fastq reads ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF556XCJ 4058727963 Michael Snyder, Stanford 7bc833c3336aa6390aef59c22557cf67 https://www.encodeproject.org/files/ENCFF886VXN/@@download/ENCFF886VXN.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF073TIY fastq reads ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF415BMN 3770995170 Michael Snyder, Stanford fedbdcdb62d9f1a69f7e6d8007266ded https://www.encodeproject.org/files/ENCFF073TIY/@@download/ENCFF073TIY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF498FBX bam unfiltered alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF073TIY, ENCFF415BMN, ENCFF643CGH 6896779715 ENCODE Processing Pipeline a6730c89abd901f012f9bf861e4e1f41 https://www.encodeproject.org/files/ENCFF498FBX/@@download/ENCFF498FBX.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF481NOZ bam unfiltered alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF073TIY, ENCFF415BMN, ENCFF807MUK 6892747144 ENCODE Processing Pipeline d83538f80cf41e4bbf2e920384cb3509 https://www.encodeproject.org/files/ENCFF481NOZ/@@download/ENCFF481NOZ.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF873PDP bam unfiltered alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF556XCJ, ENCFF643CGH, ENCFF886VXN 7254380957 ENCODE Processing Pipeline 34e3989149d139caf7967fd72b39d96d https://www.encodeproject.org/files/ENCFF873PDP/@@download/ENCFF873PDP.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF577JDF bam unfiltered alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF556XCJ, ENCFF807MUK, ENCFF886VXN 7247078769 ENCODE Processing Pipeline 4709b12dfd5d14ac89be45e5be301b63 https://www.encodeproject.org/files/ENCFF577JDF/@@download/ENCFF577JDF.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF239JHG bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF073TIY, ENCFF415BMN, ENCFF643CGH 4042320616 ENCODE Processing Pipeline d8bfd65598de7e8426b4b6b03a111ad2 https://www.encodeproject.org/files/ENCFF239JHG/@@download/ENCFF239JHG.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF862OJR bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF073TIY, ENCFF415BMN, ENCFF807MUK 4040105547 ENCODE Processing Pipeline 2bdebd3be7ad64f65d28ca66156302bc https://www.encodeproject.org/files/ENCFF862OJR/@@download/ENCFF862OJR.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF181NHZ bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF556XCJ, ENCFF643CGH, ENCFF886VXN 4987748102 ENCODE Processing Pipeline 5c1646f5de8ccaf99ceb64d8c51a7441 https://www.encodeproject.org/files/ENCFF181NHZ/@@download/ENCFF181NHZ.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF586ITU bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF556XCJ, ENCFF807MUK, ENCFF886VXN 4984107527 ENCODE Processing Pipeline fe0f1f5b3ee52a8315dc8c10d2a3eed4 https://www.encodeproject.org/files/ENCFF586ITU/@@download/ENCFF586ITU.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF078MOW bigWig signal p-value ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF586ITU, ENCFF834TUP 1199118236 ENCODE Processing Pipeline 60665e408fe6519dbf28f2d27d90d50b https://www.encodeproject.org/files/ENCFF078MOW/@@download/ENCFF078MOW.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF997NSC bigWig signal p-value ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF862OJR 1255755527 ENCODE Processing Pipeline 464fa3c7fa7b3bd4449ddf3e561239dd https://www.encodeproject.org/files/ENCFF997NSC/@@download/ENCFF997NSC.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF016RJH bigWig signal p-value ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF586ITU, ENCFF834TUP, ENCFF862OJR 2029989144 ENCODE Processing Pipeline 7dd0542d18d25e06aac653aecc39b0de https://www.encodeproject.org/files/ENCFF016RJH/@@download/ENCFF016RJH.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF839WNB bigWig fold change over control ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF862OJR 1289090039 ENCODE Processing Pipeline 6f99f3efada031d40a27f927b40df44d https://www.encodeproject.org/files/ENCFF839WNB/@@download/ENCFF839WNB.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF171HRV bigWig fold change over control ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF586ITU, ENCFF834TUP 1498956010 ENCODE Processing Pipeline 83e646dcb6e0d8b9b773c64730e24491 https://www.encodeproject.org/files/ENCFF171HRV/@@download/ENCFF171HRV.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF817FTR bigWig fold change over control ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF586ITU, ENCFF834TUP, ENCFF862OJR 2364185993 ENCODE Processing Pipeline aa2b61c5afa6e53fa7028464f0f49798 https://www.encodeproject.org/files/ENCFF817FTR/@@download/ENCFF817FTR.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF184LWN bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF862OJR 6760658 ENCODE Processing Pipeline e5fada76098ed965199101b8c6704614 https://www.encodeproject.org/files/ENCFF184LWN/@@download/ENCFF184LWN.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF626FHE bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF586ITU, ENCFF834TUP 7030359 ENCODE Processing Pipeline 89890d22842a3d686828dd8bf8a1d8b9 https://www.encodeproject.org/files/ENCFF626FHE/@@download/ENCFF626FHE.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF544LRY bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF586ITU, ENCFF834TUP, ENCFF862OJR 7204945 ENCODE Processing Pipeline 62a84a58a366a2bbc905adfc2e66dc8e https://www.encodeproject.org/files/ENCFF544LRY/@@download/ENCFF544LRY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF977HSO bigBed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF184LWN 12974501 ENCODE Processing Pipeline 228dd9da00cfee9488a0829456cfdec5 https://www.encodeproject.org/files/ENCFF977HSO/@@download/ENCFF977HSO.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF550SBD bigBed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF626FHE 13045218 ENCODE Processing Pipeline 5cedcc10007eacf5653cd56c4926e29d https://www.encodeproject.org/files/ENCFF550SBD/@@download/ENCFF550SBD.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF542KNZ bigBed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF544LRY 12892302 ENCODE Processing Pipeline cc3e3cf2633e64641f078cf4c1a8e37e https://www.encodeproject.org/files/ENCFF542KNZ/@@download/ENCFF542KNZ.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF826JJT bigBed narrowPeak optimal idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104JHN 185899 ENCODE Processing Pipeline 08470c2e20dd25f772f57ea93ba7190b https://www.encodeproject.org/files/ENCFF826JJT/@@download/ENCFF826JJT.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF081IPO bigBed narrowPeak conservative idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF072FBE 149375 ENCODE Processing Pipeline 9d529a817c32cd97ffa275a6f805d261 https://www.encodeproject.org/files/ENCFF081IPO/@@download/ENCFF081IPO.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF413PJP bed narrowPeak conservative idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF184LWN, ENCFF544LRY, ENCFF626FHE 45269 ENCODE Processing Pipeline a97e0a44c775507da084b6d269aaa673 https://www.encodeproject.org/files/ENCFF413PJP/@@download/ENCFF413PJP.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF996IVU bed narrowPeak optimal idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF184LWN, ENCFF544LRY, ENCFF626FHE 67192 ENCODE Processing Pipeline 858a6d4a0594e5207d07a18e71bbcf9e https://www.encodeproject.org/files/ENCFF996IVU/@@download/ENCFF996IVU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF203BYN bigWig signal p-value ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF239JHG, ENCFF790TAN 1129003259 ENCODE Processing Pipeline 4fdb016d26cb4ba4de47fd0446c306de https://www.encodeproject.org/files/ENCFF203BYN/@@download/ENCFF203BYN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF347CNK bigWig signal p-value ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF181NHZ, ENCFF712WXB 1124717574 ENCODE Processing Pipeline a5417cac74e6077c6c2c6f07cbb80bc6 https://www.encodeproject.org/files/ENCFF347CNK/@@download/ENCFF347CNK.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF179DZT bigWig signal p-value ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF181NHZ, ENCFF239JHG, ENCFF712WXB, ENCFF790TAN 2025264256 ENCODE Processing Pipeline e5badb31a6d3d7618307d194431f6b3d https://www.encodeproject.org/files/ENCFF179DZT/@@download/ENCFF179DZT.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF745VNX bigWig fold change over control ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF239JHG, ENCFF790TAN 1295027459 ENCODE Processing Pipeline 751e14d0aae96e9a4b6cfba30949e329 https://www.encodeproject.org/files/ENCFF745VNX/@@download/ENCFF745VNX.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF879RWA bigWig fold change over control ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF181NHZ, ENCFF712WXB 1500152314 ENCODE Processing Pipeline 95a8967b2d43257f07313c6e098287e7 https://www.encodeproject.org/files/ENCFF879RWA/@@download/ENCFF879RWA.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF869IEP bigWig fold change over control ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF181NHZ, ENCFF239JHG, ENCFF712WXB, ENCFF790TAN 2345597515 ENCODE Processing Pipeline 53e1b169ce9280e591f47fea5b552e23 https://www.encodeproject.org/files/ENCFF869IEP/@@download/ENCFF869IEP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF047AWC bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF181NHZ, ENCFF239JHG, ENCFF712WXB, ENCFF790TAN 7205999 ENCODE Processing Pipeline 10b08a5eb440fa7130d22c190e8d1035 https://www.encodeproject.org/files/ENCFF047AWC/@@download/ENCFF047AWC.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF626YPP bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF181NHZ, ENCFF712WXB 6958768 ENCODE Processing Pipeline 9be8e82b6f33d1d6195baa879c2dfc57 https://www.encodeproject.org/files/ENCFF626YPP/@@download/ENCFF626YPP.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF825HYT bigBed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF563YVH 12987086 ENCODE Processing Pipeline 685f6dbd0a520c48fe254ee0abe5b15b https://www.encodeproject.org/files/ENCFF825HYT/@@download/ENCFF825HYT.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF998XIA bigBed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF626YPP 13055860 ENCODE Processing Pipeline 401a9d29d8bc521a25fd5e7230caab03 https://www.encodeproject.org/files/ENCFF998XIA/@@download/ENCFF998XIA.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF306BSE bigBed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF047AWC 12907815 ENCODE Processing Pipeline 5da55f5a85136d646a3647c393bf8a69 https://www.encodeproject.org/files/ENCFF306BSE/@@download/ENCFF306BSE.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF696WVL bed narrowPeak conservative idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF047AWC, ENCFF419RSJ, ENCFF563YVH, ENCFF626YPP 44157 ENCODE Processing Pipeline 8a52fcebe19511ac1f3e8683827957af https://www.encodeproject.org/files/ENCFF696WVL/@@download/ENCFF696WVL.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF563YVH bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF239JHG, ENCFF790TAN 6654230 ENCODE Processing Pipeline a10af8c23fa482e00c146988cfe4f385 https://www.encodeproject.org/files/ENCFF563YVH/@@download/ENCFF563YVH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF594CRK bigBed narrowPeak conservative idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF696WVL 148818 ENCODE Processing Pipeline 029e39435b812239c4be23dae6baa6cd https://www.encodeproject.org/files/ENCFF594CRK/@@download/ENCFF594CRK.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF979NKM bed narrowPeak optimal idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF047AWC, ENCFF419RSJ, ENCFF563YVH, ENCFF626YPP 66586 ENCODE Processing Pipeline a4cc5a08895ade9dede6859e3aaae5dc https://www.encodeproject.org/files/ENCFF979NKM/@@download/ENCFF979NKM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF316XJJ bigBed narrowPeak optimal idr thresholded peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF979NKM 186366 ENCODE Processing Pipeline dbd90d0c5a2bc0035ddef62684a6b204 https://www.encodeproject.org/files/ENCFF316XJJ/@@download/ENCFF316XJJ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF978OQN bam unfiltered alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF031JCO, ENCFF579BJG, ENCFF807MUK 4891017892 ENCODE Processing Pipeline c7c3c84e79636f8592aa18738d9aa5a6 https://www.encodeproject.org/files/ENCFF978OQN/@@download/ENCFF978OQN.bam hg19 released ENCFF961TUS bam unfiltered alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF290HFY, ENCFF389HJO, ENCFF807MUK 4988210709 ENCODE Processing Pipeline 684b9a379348bb1f6a00c8567a05c04d https://www.encodeproject.org/files/ENCFF961TUS/@@download/ENCFF961TUS.bam hg19 released ENCFF579BJG fastq reads ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF031JCO 2238776183 Michael Snyder, Stanford fb0fedad886058e981cda9f760e23ca7 SRA:SRR5111996 https://www.encodeproject.org/files/ENCFF579BJG/@@download/ENCFF579BJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF031JCO fastq reads ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF579BJG 2266799132 Michael Snyder, Stanford e2c01dfc59e5b04ce99b26e8f4a6e1ad SRA:SRR5111996 https://www.encodeproject.org/files/ENCFF031JCO/@@download/ENCFF031JCO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF290HFY fastq reads ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF389HJO 2276695908 Michael Snyder, Stanford 180984e5627c7b935b22c50da498772c SRA:SRR5111997 https://www.encodeproject.org/files/ENCFF290HFY/@@download/ENCFF290HFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF389HJO fastq reads ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF290HFY 2355533628 Michael Snyder, Stanford 1a01960a94b28fb3eb5eb44f155d4057 SRA:SRR5111997 https://www.encodeproject.org/files/ENCFF389HJO/@@download/ENCFF389HJO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF419BCJ bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF031JCO, ENCFF579BJG, ENCFF807MUK 4056706019 ENCODE Processing Pipeline 8b26d8d5bfb17ee8c74086d8a48e15b1 https://www.encodeproject.org/files/ENCFF419BCJ/@@download/ENCFF419BCJ.bam hg19 released ENCFF275MTH bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF290HFY, ENCFF389HJO, ENCFF807MUK 4123622959 ENCODE Processing Pipeline a39fcb88b4f6f23d2d715bd92c773588 https://www.encodeproject.org/files/ENCFF275MTH/@@download/ENCFF275MTH.bam hg19 released ENCFF008LZB bigWig signal p-value ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF419BCJ, ENCFF581ZJL 993925263 ENCODE Processing Pipeline 7e0ed9daf5c17f9d3c543e8fc2827cab https://www.encodeproject.org/files/ENCFF008LZB/@@download/ENCFF008LZB.bigWig hg19 released ENCFF501PHW bigWig signal p-value ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF275MTH, ENCFF419BCJ, ENCFF581ZJL 1908227243 ENCODE Processing Pipeline 5e778cab0026fea5dee9427cf607c2f4 https://www.encodeproject.org/files/ENCFF501PHW/@@download/ENCFF501PHW.bigWig hg19 released ENCFF518XWO bigWig fold change over control ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF419BCJ, ENCFF581ZJL 1095944673 ENCODE Processing Pipeline 044f81c509f4a4a114dce87858ba2e01 https://www.encodeproject.org/files/ENCFF518XWO/@@download/ENCFF518XWO.bigWig hg19 released ENCFF950HQL bigWig fold change over control ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF275MTH, ENCFF419BCJ, ENCFF581ZJL 2032228868 ENCODE Processing Pipeline a2c56d4a7bd697ffa4fc2c89c2300865 https://www.encodeproject.org/files/ENCFF950HQL/@@download/ENCFF950HQL.bigWig hg19 released ENCFF769IXF bam unfiltered alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF290HFY, ENCFF389HJO, ENCFF643CGH 4991710530 ENCODE Processing Pipeline 88c5ed5ccd328334190c59e6d3e2b3a6 https://www.encodeproject.org/files/ENCFF769IXF/@@download/ENCFF769IXF.bam GRCh38 released ENCFF558VZG bam unfiltered alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF031JCO, ENCFF579BJG, ENCFF643CGH 4894135386 ENCODE Processing Pipeline dc3f93cb8362723897f157de748b27a7 https://www.encodeproject.org/files/ENCFF558VZG/@@download/ENCFF558VZG.bam GRCh38 released ENCFF990RGE bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF031JCO, ENCFF579BJG, ENCFF643CGH 4058830620 ENCODE Processing Pipeline 0784d80d2ec22873b8af398a4b6c95af https://www.encodeproject.org/files/ENCFF990RGE/@@download/ENCFF990RGE.bam GRCh38 released ENCFF205JWI bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF290HFY, ENCFF389HJO, ENCFF643CGH 4126083015 ENCODE Processing Pipeline 3a37d4338adaeb55f40908d10aaf2e01 https://www.encodeproject.org/files/ENCFF205JWI/@@download/ENCFF205JWI.bam GRCh38 released ENCFF602WSY bigWig signal p-value ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF910IKB, ENCFF990RGE 1165695792 ENCODE Processing Pipeline d2bf75cd9d79fbcec24a068355ea92d0 https://www.encodeproject.org/files/ENCFF602WSY/@@download/ENCFF602WSY.bigWig GRCh38 released ENCFF348PHJ bigWig signal p-value ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF205JWI, ENCFF227IZS 996403906 ENCODE Processing Pipeline c5ab2991a2ea3abe1699eee8550af863 https://www.encodeproject.org/files/ENCFF348PHJ/@@download/ENCFF348PHJ.bigWig GRCh38 released ENCFF299QNZ bigWig signal p-value ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF205JWI, ENCFF227IZS, ENCFF910IKB, ENCFF990RGE 1633925318 ENCODE Processing Pipeline e16e25944c11b269015faaec0a3e17be https://www.encodeproject.org/files/ENCFF299QNZ/@@download/ENCFF299QNZ.bigWig GRCh38 released ENCFF303SNH bigWig fold change over control ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF910IKB, ENCFF990RGE 1112033162 ENCODE Processing Pipeline 56fc4362aaee1103c5e3f5a7d70e6a4b https://www.encodeproject.org/files/ENCFF303SNH/@@download/ENCFF303SNH.bigWig GRCh38 released ENCFF604AYW bigWig fold change over control ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF205JWI, ENCFF227IZS 1082903932 ENCODE Processing Pipeline 148a05c19a93d8181cb4a5ae29cf2b06 https://www.encodeproject.org/files/ENCFF604AYW/@@download/ENCFF604AYW.bigWig GRCh38 released ENCFF772BIP bigWig fold change over control ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF205JWI, ENCFF227IZS, ENCFF910IKB, ENCFF990RGE 2032716144 ENCODE Processing Pipeline 96cd635d1830806ba587ba6034cc4b99 https://www.encodeproject.org/files/ENCFF772BIP/@@download/ENCFF772BIP.bigWig GRCh38 released ENCFF270KFK bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF910IKB, ENCFF990RGE 6953744 ENCODE Processing Pipeline b4ff747cda216dbd657bb70ed71c07ec https://www.encodeproject.org/files/ENCFF270KFK/@@download/ENCFF270KFK.bed.gz GRCh38 released ENCFF866GQW bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF205JWI, ENCFF227IZS 7081882 ENCODE Processing Pipeline 837bf54ed6ea5dfa0037ea25db86d35f https://www.encodeproject.org/files/ENCFF866GQW/@@download/ENCFF866GQW.bed.gz GRCh38 released ENCFF604PYY bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF205JWI, ENCFF227IZS, ENCFF910IKB, ENCFF990RGE 7076825 ENCODE Processing Pipeline b0db0cc49e12aeef6a7bd83ff809d09e https://www.encodeproject.org/files/ENCFF604PYY/@@download/ENCFF604PYY.bed.gz GRCh38 released ENCFF063KQF bigBed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF270KFK 12512693 ENCODE Processing Pipeline 2c3c0d22d6924c46076c0fda0d6ecc6a https://www.encodeproject.org/files/ENCFF063KQF/@@download/ENCFF063KQF.bigBed GRCh38 released ENCFF010BQK bigBed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF866GQW 12569962 ENCODE Processing Pipeline 27a452da8c6b1b9630857f6b0827d1f7 https://www.encodeproject.org/files/ENCFF010BQK/@@download/ENCFF010BQK.bigBed GRCh38 released ENCFF857HLP bigBed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF604PYY 12468114 ENCODE Processing Pipeline 68812fdb53ebdedf36cc78b189f9f1a1 https://www.encodeproject.org/files/ENCFF857HLP/@@download/ENCFF857HLP.bigBed GRCh38 released ENCFF315QEI bed narrowPeak conservative idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF270KFK, ENCFF419RSJ, ENCFF604PYY, ENCFF866GQW 719807 ENCODE Processing Pipeline 5c6e471d10b6e130280ca21b58d0489b https://www.encodeproject.org/files/ENCFF315QEI/@@download/ENCFF315QEI.bed.gz GRCh38 released ENCFF696SQO bigBed narrowPeak conservative idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF315QEI 1275011 ENCODE Processing Pipeline 57481bf68af26927d7bc64a7ffc10ee3 https://www.encodeproject.org/files/ENCFF696SQO/@@download/ENCFF696SQO.bigBed GRCh38 released ENCFF217ZTP bed narrowPeak optimal idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF270KFK, ENCFF419RSJ, ENCFF604PYY, ENCFF866GQW 810140 ENCODE Processing Pipeline 2a578032f9978572c617f3bea687c6e1 https://www.encodeproject.org/files/ENCFF217ZTP/@@download/ENCFF217ZTP.bed.gz GRCh38 released ENCFF038VUN bigBed narrowPeak optimal idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF217ZTP 1777827 ENCODE Processing Pipeline c16bd18dedbfdce23d3fcaff583b6d6d https://www.encodeproject.org/files/ENCFF038VUN/@@download/ENCFF038VUN.bigBed GRCh38 released ENCFF750WTZ bigWig signal p-value ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF275MTH 1150640035 ENCODE Processing Pipeline 58a56eb33f9bae962fcbdfb141edac2a https://www.encodeproject.org/files/ENCFF750WTZ/@@download/ENCFF750WTZ.bigWig hg19 released ENCFF515FHT bigWig fold change over control ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF275MTH 1100858289 ENCODE Processing Pipeline b3fe3e1298d575dda9082ecbbd7a9e0e https://www.encodeproject.org/files/ENCFF515FHT/@@download/ENCFF515FHT.bigWig hg19 released ENCFF023VOJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF419BCJ, ENCFF581ZJL 7181376 ENCODE Processing Pipeline 3083a486dc1b0b3129c6eff438f6bf88 https://www.encodeproject.org/files/ENCFF023VOJ/@@download/ENCFF023VOJ.bed.gz hg19 released ENCFF577FLU bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF275MTH, ENCFF419BCJ, ENCFF581ZJL 7073849 ENCODE Processing Pipeline 79d74b742addce40d1078d853ff2a677 https://www.encodeproject.org/files/ENCFF577FLU/@@download/ENCFF577FLU.bed.gz hg19 released ENCFF918XMD bigBed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF994IZJ 12680018 ENCODE Processing Pipeline 6b0ea31a2afd440a176b792a32dd75c9 https://www.encodeproject.org/files/ENCFF918XMD/@@download/ENCFF918XMD.bigBed hg19 released ENCFF638WVV bigBed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF577FLU 12452617 ENCODE Processing Pipeline 720d82b28b470e59e1eae108dcb1adc4 https://www.encodeproject.org/files/ENCFF638WVV/@@download/ENCFF638WVV.bigBed hg19 released ENCFF206HJJ bed narrowPeak conservative idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF023VOJ, ENCFF577FLU, ENCFF994IZJ 721887 ENCODE Processing Pipeline 233433cd141483e4d68e08405ce9eebf https://www.encodeproject.org/files/ENCFF206HJJ/@@download/ENCFF206HJJ.bed.gz hg19 released ENCFF823SYE bed narrowPeak optimal idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF023VOJ, ENCFF577FLU, ENCFF994IZJ 812173 ENCODE Processing Pipeline 59b72560947ff818b0d51aac88596a9b https://www.encodeproject.org/files/ENCFF823SYE/@@download/ENCFF823SYE.bed.gz hg19 released ENCFF297CCE bigBed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF023VOJ 12750939 ENCODE Processing Pipeline 8ab3cb978c6abdce6b9d5f8e96ea5a4c https://www.encodeproject.org/files/ENCFF297CCE/@@download/ENCFF297CCE.bigBed hg19 released ENCFF994IZJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF275MTH 7191587 ENCODE Processing Pipeline 36d1b5a86c8378751f9dce955bef0765 https://www.encodeproject.org/files/ENCFF994IZJ/@@download/ENCFF994IZJ.bed.gz hg19 released ENCFF547VWB bigBed narrowPeak conservative idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF206HJJ 1275524 ENCODE Processing Pipeline 35c95fb2202da5fbabb8932f4a9899c3 https://www.encodeproject.org/files/ENCFF547VWB/@@download/ENCFF547VWB.bigBed hg19 released ENCFF445BRV bigBed narrowPeak optimal idr thresholded peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF823SYE 1779591 ENCODE Processing Pipeline e011016dfb5141336a5276176b6c9f5f https://www.encodeproject.org/files/ENCFF445BRV/@@download/ENCFF445BRV.bigBed hg19 released ENCFF201QWW bam unfiltered alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAY, ENCFF807MUK 1233594113 ENCODE Processing Pipeline 43a25ca747e57f48f6ef034fa8c7408f https://www.encodeproject.org/files/ENCFF201QWW/@@download/ENCFF201QWW.bam hg19 released low read length ENCFF361AZA bam unfiltered alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAS, ENCFF807MUK 1413236105 ENCODE Processing Pipeline 3feaf28a07824cfe4836107359a301d7 https://www.encodeproject.org/files/ENCFF361AZA/@@download/ENCFF361AZA.bam hg19 released low read length ENCFF192ENS bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 640146499 ENCODE Processing Pipeline 649140b3c02da09efbfd50a400343767 https://www.encodeproject.org/files/ENCFF192ENS/@@download/ENCFF192ENS.bigWig hg19 released low read length ENCFF973LBO bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 491978107 ENCODE Processing Pipeline 3bb35f6e52800cba368521b32ee99667 https://www.encodeproject.org/files/ENCFF973LBO/@@download/ENCFF973LBO.bigWig hg19 released low read length ENCFF778EPG bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423SVA, ENCFF817NEK, ENCFF863VMN, ENCFF876KIY 1072376059 ENCODE Processing Pipeline c66c81e7f96ad54f2902585f2cf8b914 https://www.encodeproject.org/files/ENCFF778EPG/@@download/ENCFF778EPG.bigWig hg19 released low read length ENCFF596MEF bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423SVA, ENCFF817NEK, ENCFF863VMN, ENCFF876KIY 1102687008 ENCODE Processing Pipeline 8fe4ab7e79d36ba6ad60c4627ae018f5 https://www.encodeproject.org/files/ENCFF596MEF/@@download/ENCFF596MEF.bigWig hg19 released low read length ENCFF857HPQ bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF126HBJ 11001194 ENCODE Processing Pipeline 33450e16d928d53f8312b51f569a6007 https://www.encodeproject.org/files/ENCFF857HPQ/@@download/ENCFF857HPQ.bigBed hg19 released low read length ENCFF881QVJ bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF144BHZ 11038200 ENCODE Processing Pipeline 48eb4f32a3c00e9db8e53d11eb304d99 https://www.encodeproject.org/files/ENCFF881QVJ/@@download/ENCFF881QVJ.bigBed hg19 released low read length ENCFF243EOI bigBed narrowPeak optimal idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF297BXM 336681 ENCODE Processing Pipeline af81f8ba81d9920c81c03155112e78d4 https://www.encodeproject.org/files/ENCFF243EOI/@@download/ENCFF243EOI.bigBed hg19 released low read length ENCFF126HBJ bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 4458692 ENCODE Processing Pipeline 17a38a6848d9b81c86be2db1ef3fc780 https://www.encodeproject.org/files/ENCFF126HBJ/@@download/ENCFF126HBJ.bed.gz hg19 released low read length ENCFF297BXM bed narrowPeak optimal idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF126HBJ, ENCFF144BHZ, ENCFF596MOA 170579 ENCODE Processing Pipeline bee2941bec91c7c87a5e2348f00cbff5 https://www.encodeproject.org/files/ENCFF297BXM/@@download/ENCFF297BXM.bed.gz hg19 released low read length ENCFF144BHZ bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 4684240 ENCODE Processing Pipeline b039605dd3eb42480c302fbe7f343f62 https://www.encodeproject.org/files/ENCFF144BHZ/@@download/ENCFF144BHZ.bed.gz hg19 released low read length ENCFF232SOL bigBed narrowPeak conservative idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF266HXY 291763 ENCODE Processing Pipeline 09f7351d11ffcc04c2e8b24fd2826e4a https://www.encodeproject.org/files/ENCFF232SOL/@@download/ENCFF232SOL.bigBed hg19 released low read length ENCFF102IFS bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF596MOA 11588741 ENCODE Processing Pipeline 0d6201e2dc2edd08090ab9a12a89d2db https://www.encodeproject.org/files/ENCFF102IFS/@@download/ENCFF102IFS.bigBed hg19 released low read length ENCFF266HXY bed narrowPeak conservative idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF126HBJ, ENCFF144BHZ, ENCFF596MOA 137507 ENCODE Processing Pipeline f7e922c1f864ab789a4b1955ca73dcef https://www.encodeproject.org/files/ENCFF266HXY/@@download/ENCFF266HXY.bed.gz hg19 released low read length ENCFF596MOA bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423SVA, ENCFF817NEK, ENCFF863VMN, ENCFF876KIY 5957990 ENCODE Processing Pipeline 1133aca16907c33163480a858056a8ba https://www.encodeproject.org/files/ENCFF596MOA/@@download/ENCFF596MOA.bed.gz hg19 released low read length ENCFF002EAS fastq reads ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 981346307 Michael Snyder, Stanford a071939086a5644f84ec6970e5847e22 SRA:SRR5111708 https://www.encodeproject.org/files/ENCFF002EAS/@@download/ENCFF002EAS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length ENCFF002EAY fastq reads ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1001614743 Michael Snyder, Stanford be488aa6911ae9fbb67b53dc358a8cd8 SRA:SRR5111707 https://www.encodeproject.org/files/ENCFF002EAY/@@download/ENCFF002EAY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length ENCFF423SVA bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAS, ENCFF807MUK 993114665 ENCODE Processing Pipeline 2d4b0645018d093f71c69fa900a56c77 https://www.encodeproject.org/files/ENCFF423SVA/@@download/ENCFF423SVA.bam hg19 released low read length ENCFF876KIY bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAY, ENCFF807MUK 880139109 ENCODE Processing Pipeline 7bf0f2567c767ddef3f04624cce6e038 https://www.encodeproject.org/files/ENCFF876KIY/@@download/ENCFF876KIY.bam hg19 released low read length ENCFF826ENA bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 653974370 ENCODE Processing Pipeline 8eb2cfd73949b21e1d7c1a3483b8863e https://www.encodeproject.org/files/ENCFF826ENA/@@download/ENCFF826ENA.bigWig hg19 archived low read length ENCFF936UNR bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 504144753 ENCODE Processing Pipeline 308e59b910ce95d68787325536a007ce https://www.encodeproject.org/files/ENCFF936UNR/@@download/ENCFF936UNR.bigWig hg19 released low read length ENCFF907AML bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423SVA, ENCFF817NEK, ENCFF863VMN, ENCFF876KIY 1068737829 ENCODE Processing Pipeline 9f8fed464498016d5cd56edb56a39085 https://www.encodeproject.org/files/ENCFF907AML/@@download/ENCFF907AML.bigWig hg19 archived low read length ENCFF347XQL bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 493590181 ENCODE Processing Pipeline 9f5ff02b4c7d494d5a15e3e388b737d6 https://www.encodeproject.org/files/ENCFF347XQL/@@download/ENCFF347XQL.bigWig hg19 archived low read length ENCFF076MKJ bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 513493563 ENCODE Processing Pipeline c1fb051bae66db24eb93b3542dd5e8e9 https://www.encodeproject.org/files/ENCFF076MKJ/@@download/ENCFF076MKJ.bigWig hg19 released low read length ENCFF645MZA bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423SVA, ENCFF817NEK, ENCFF863VMN, ENCFF876KIY 1088294358 ENCODE Processing Pipeline e43a886219fff7d5d7d6e0d082514561 https://www.encodeproject.org/files/ENCFF645MZA/@@download/ENCFF645MZA.bigWig hg19 archived low read length ENCFF555MVU bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 4929047 ENCODE Processing Pipeline 7a4179c75cc94bab2656baeaec9484b2 https://www.encodeproject.org/files/ENCFF555MVU/@@download/ENCFF555MVU.bed.gz hg19 archived low read length ENCFF774CXV bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 4687227 ENCODE Processing Pipeline 03ffe23db55bbba6325625b7bfd07dbe https://www.encodeproject.org/files/ENCFF774CXV/@@download/ENCFF774CXV.bed.gz hg19 archived low read length ENCFF128XNM bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423SVA, ENCFF817NEK, ENCFF863VMN, ENCFF876KIY 6170349 ENCODE Processing Pipeline a2e60512da085951b23aa55ac6c413ae https://www.encodeproject.org/files/ENCFF128XNM/@@download/ENCFF128XNM.bed.gz hg19 archived low read length ENCFF900BFR bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF555MVU 11218391 ENCODE Processing Pipeline 2fba82b72f3fc8ecc97ef2ccfb3c7e1a https://www.encodeproject.org/files/ENCFF900BFR/@@download/ENCFF900BFR.bigBed hg19 archived low read length ENCFF760HMQ bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF774CXV 11183304 ENCODE Processing Pipeline be5cde1fcb06a5dcc064ce8d8a39a93e https://www.encodeproject.org/files/ENCFF760HMQ/@@download/ENCFF760HMQ.bigBed hg19 archived low read length ENCFF030TPD bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF128XNM 11609035 ENCODE Processing Pipeline 4b2cf9f628e966564dbf7af55e61732d https://www.encodeproject.org/files/ENCFF030TPD/@@download/ENCFF030TPD.bigBed hg19 archived low read length ENCFF935IVR bam unfiltered alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAY, ENCFF643CGH 1239662601 ENCODE Processing Pipeline 99116c5f4f6478e3babfe90e285233a8 https://www.encodeproject.org/files/ENCFF935IVR/@@download/ENCFF935IVR.bam GRCh38 released low read length ENCFF911VGR bam unfiltered alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAS, ENCFF643CGH 1420266378 ENCODE Processing Pipeline 06138c91ee5169c35b6b4ad9308af432 https://www.encodeproject.org/files/ENCFF911VGR/@@download/ENCFF911VGR.bam GRCh38 released low read length ENCFF063AFU bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAS, ENCFF643CGH 992722795 ENCODE Processing Pipeline 3ca6f0f166f002aafd0efa8b5299abb1 https://www.encodeproject.org/files/ENCFF063AFU/@@download/ENCFF063AFU.bam GRCh38 released low read length ENCFF421XBU bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAY, ENCFF643CGH 879730867 ENCODE Processing Pipeline efd39dec2de505c42a5573cce8b0bbc3 https://www.encodeproject.org/files/ENCFF421XBU/@@download/ENCFF421XBU.bam GRCh38 released low read length ENCFF957XYK bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF421XBU, ENCFF511RLN 541764011 ENCODE Processing Pipeline 469448716a60673091255f799e30487f https://www.encodeproject.org/files/ENCFF957XYK/@@download/ENCFF957XYK.bigWig GRCh38 released low read length ENCFF102YWF bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF063AFU, ENCFF536CTV 577973566 ENCODE Processing Pipeline b06107b68fbdee00e480816fc7ec5316 https://www.encodeproject.org/files/ENCFF102YWF/@@download/ENCFF102YWF.bigWig GRCh38 released low read length ENCFF170OVP bigWig signal p-value ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF063AFU, ENCFF421XBU, ENCFF511RLN, ENCFF536CTV 1047525784 ENCODE Processing Pipeline c97ee97b94a22c169c6f551c26351923 https://www.encodeproject.org/files/ENCFF170OVP/@@download/ENCFF170OVP.bigWig GRCh38 released low read length ENCFF481UBB bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF421XBU, ENCFF511RLN 496005689 ENCODE Processing Pipeline 9addd9c816e9b375303c2b97765fa314 https://www.encodeproject.org/files/ENCFF481UBB/@@download/ENCFF481UBB.bigWig GRCh38 released low read length ENCFF368VEC bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF063AFU, ENCFF536CTV 521677042 ENCODE Processing Pipeline 707f38801fc11216fa7241e4df9db365 https://www.encodeproject.org/files/ENCFF368VEC/@@download/ENCFF368VEC.bigWig GRCh38 released low read length ENCFF435UFG bigWig fold change over control ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF063AFU, ENCFF421XBU, ENCFF511RLN, ENCFF536CTV 1102327699 ENCODE Processing Pipeline 6e2f8b6ecf4096bf8cafc93c4321e450 https://www.encodeproject.org/files/ENCFF435UFG/@@download/ENCFF435UFG.bigWig GRCh38 released low read length ENCFF225ICI bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF063AFU, ENCFF536CTV 4682268 ENCODE Processing Pipeline 9d16d8719e25c09f47cb695381cc6915 https://www.encodeproject.org/files/ENCFF225ICI/@@download/ENCFF225ICI.bed.gz GRCh38 released low read length ENCFF929ZCR bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF063AFU, ENCFF421XBU, ENCFF511RLN, ENCFF536CTV 5903503 ENCODE Processing Pipeline 6add27599b857a8da855f8881f543dc5 https://www.encodeproject.org/files/ENCFF929ZCR/@@download/ENCFF929ZCR.bed.gz GRCh38 released low read length ENCFF687KJY bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF421XBU, ENCFF511RLN 4463075 ENCODE Processing Pipeline 4e3605a2e1a57680cbbc9b22c0d949fe https://www.encodeproject.org/files/ENCFF687KJY/@@download/ENCFF687KJY.bed.gz GRCh38 released low read length ENCFF294MSX bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF687KJY 11015127 ENCODE Processing Pipeline 68bcb04bd086fe229f580424f907bc76 https://www.encodeproject.org/files/ENCFF294MSX/@@download/ENCFF294MSX.bigBed GRCh38 released low read length ENCFF525YEM bed narrowPeak conservative idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF225ICI, ENCFF419RSJ, ENCFF687KJY, ENCFF929ZCR 137858 ENCODE Processing Pipeline 858468dd59954893950dbdd05828dfa3 https://www.encodeproject.org/files/ENCFF525YEM/@@download/ENCFF525YEM.bed.gz GRCh38 released low read length ENCFF793KHQ bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF225ICI 11042821 ENCODE Processing Pipeline 012d0e6bf385d300b4672bfbf1382f04 https://www.encodeproject.org/files/ENCFF793KHQ/@@download/ENCFF793KHQ.bigBed GRCh38 released low read length ENCFF250XGV bigBed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF929ZCR 11583619 ENCODE Processing Pipeline 5683d844e73538b92e8753889403d8ee https://www.encodeproject.org/files/ENCFF250XGV/@@download/ENCFF250XGV.bigBed GRCh38 released low read length ENCFF882YLO bed narrowPeak optimal idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF225ICI, ENCFF419RSJ, ENCFF687KJY, ENCFF929ZCR 172377 ENCODE Processing Pipeline bcdd8d146856723e85d46e62185ffe1c https://www.encodeproject.org/files/ENCFF882YLO/@@download/ENCFF882YLO.bed.gz GRCh38 released low read length ENCFF217RUC bigBed narrowPeak conservative idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF525YEM 299623 ENCODE Processing Pipeline ad8403236ae0bbce3795a89760841ad2 https://www.encodeproject.org/files/ENCFF217RUC/@@download/ENCFF217RUC.bigBed GRCh38 released low read length ENCFF414YIG bigBed narrowPeak optimal idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF882YLO 340107 ENCODE Processing Pipeline 24a21c2173348923d19c896306e385b8 https://www.encodeproject.org/files/ENCFF414YIG/@@download/ENCFF414YIG.bigBed GRCh38 released low read length ENCFF848USF bigBed narrowPeak conservative idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF261EFH 280770 ENCODE Processing Pipeline 7b350a847af45d8ebc1ea94721d8fb34 https://www.encodeproject.org/files/ENCFF848USF/@@download/ENCFF848USF.bigBed hg19 archived low read length ENCFF928POR bed narrowPeak optimal idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF128XNM, ENCFF555MVU, ENCFF774CXV 156347 ENCODE Processing Pipeline 11db2a9f2b96341e423d0f808874e03c https://www.encodeproject.org/files/ENCFF928POR/@@download/ENCFF928POR.bed.gz hg19 archived low read length ENCFF742PDH bigBed narrowPeak optimal idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF928POR 315290 ENCODE Processing Pipeline 9a493c18b90b552f0ecf4ec327729873 https://www.encodeproject.org/files/ENCFF742PDH/@@download/ENCFF742PDH.bigBed hg19 archived low read length ENCFF261EFH bed narrowPeak conservative idr thresholded peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF128XNM, ENCFF555MVU, ENCFF774CXV 129596 ENCODE Processing Pipeline 9a97065b83c294695a214242da5e3064 https://www.encodeproject.org/files/ENCFF261EFH/@@download/ENCFF261EFH.bed.gz hg19 archived low read length ENCFF313OQV bam unfiltered alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 100 ENCFF703DNA, ENCFF807MUK, ENCFF958CZA 4781652394 ENCODE Processing Pipeline 8d47e92f6d855a2864d9edb4074aa490 https://www.encodeproject.org/files/ENCFF313OQV/@@download/ENCFF313OQV.bam hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF673WEJ bam unfiltered alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 100 ENCFF482ODR, ENCFF807MUK, ENCFF987YBA 3741170938 ENCODE Processing Pipeline d41353a9b9b10e8c22a4d81bee985abe https://www.encodeproject.org/files/ENCFF673WEJ/@@download/ENCFF673WEJ.bam hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF958CZA fastq reads ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF703DNA 2171792251 Michael Snyder, Stanford 122de01c2d663a9e400e8a76fe115f8e SRA:SRR5111903 https://www.encodeproject.org/files/ENCFF958CZA/@@download/ENCFF958CZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF132ASO/, /files/ENCFF650GDL/ released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF482ODR fastq reads ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF987YBA 1711870433 Michael Snyder, Stanford 3139d9466ac2349c00aae742de18854e SRA:SRR5111902 https://www.encodeproject.org/files/ENCFF482ODR/@@download/ENCFF482ODR.fastq.gz Illumina HiSeq 2000 /files/ENCFF132ASO/, /files/ENCFF650GDL/ released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF703DNA fastq reads ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF958CZA 2043048258 Michael Snyder, Stanford 29f1ae8862ab6303ab58c6345252c3d1 SRA:SRR5111903 https://www.encodeproject.org/files/ENCFF703DNA/@@download/ENCFF703DNA.fastq.gz Illumina HiSeq 2000 /files/ENCFF132ASO/, /files/ENCFF650GDL/ released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF987YBA fastq reads ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF482ODR 1634965699 Michael Snyder, Stanford 8f72b86d5cf202be9d5f4e2ddb1ec8dd SRA:SRR5111902 https://www.encodeproject.org/files/ENCFF987YBA/@@download/ENCFF987YBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF132ASO/, /files/ENCFF650GDL/ released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF124TQP bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF703DNA, ENCFF807MUK, ENCFF958CZA 3436790908 ENCODE Processing Pipeline 5f2d9e3bad6fa2d5ebaed8f7b481787d https://www.encodeproject.org/files/ENCFF124TQP/@@download/ENCFF124TQP.bam hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF132XOC bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF482ODR, ENCFF807MUK, ENCFF987YBA 3049261310 ENCODE Processing Pipeline 7c4e6ddf8559731a2f77f30f4ce263e6 https://www.encodeproject.org/files/ENCFF132XOC/@@download/ENCFF132XOC.bam hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF628LDC bigWig signal p-value ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF132XOC, ENCFF587NFZ 742674291 ENCODE Processing Pipeline 2c464f838558520f989baad922114e72 https://www.encodeproject.org/files/ENCFF628LDC/@@download/ENCFF628LDC.bigWig hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF095REB bigWig signal p-value ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF124TQP, ENCFF587NFZ 800796597 ENCODE Processing Pipeline bf8ba9bc8503db7e8fe87529aa7d8729 https://www.encodeproject.org/files/ENCFF095REB/@@download/ENCFF095REB.bigWig hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF366PTL bigWig signal p-value ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF124TQP, ENCFF132XOC, ENCFF587NFZ 1120678290 ENCODE Processing Pipeline 3007a0265ba051d873309c958cbe300a https://www.encodeproject.org/files/ENCFF366PTL/@@download/ENCFF366PTL.bigWig hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF981VAE bigWig fold change over control ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF132XOC, ENCFF587NFZ 830457404 ENCODE Processing Pipeline d2a46c90c13cd294641ef2158f3b7025 https://www.encodeproject.org/files/ENCFF981VAE/@@download/ENCFF981VAE.bigWig hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF739OKV bigBed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF369MAB 13349744 ENCODE Processing Pipeline fa00c1f53e82bd8ea58fc6194e78401c https://www.encodeproject.org/files/ENCFF739OKV/@@download/ENCFF739OKV.bigBed hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF170VIW bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF132XOC, ENCFF587NFZ 6469689 ENCODE Processing Pipeline da1a2393510932d7e6a5e9280790a881 https://www.encodeproject.org/files/ENCFF170VIW/@@download/ENCFF170VIW.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF369MAB bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF124TQP, ENCFF587NFZ 6413409 ENCODE Processing Pipeline 3c8dc9701c59e3459d05d0c85a53f7e7 https://www.encodeproject.org/files/ENCFF369MAB/@@download/ENCFF369MAB.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF669WIT bigBed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF345KFF 13130344 ENCODE Processing Pipeline 764b1ac4631356ff0a30c43a991add33 https://www.encodeproject.org/files/ENCFF669WIT/@@download/ENCFF669WIT.bigBed hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF257RYT bed narrowPeak optimal idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF170VIW, ENCFF345KFF, ENCFF369MAB 270622 ENCODE Processing Pipeline 7e3090a199e6b19be857acc869c561a1 https://www.encodeproject.org/files/ENCFF257RYT/@@download/ENCFF257RYT.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF345KFF bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF124TQP, ENCFF132XOC, ENCFF587NFZ 7050591 ENCODE Processing Pipeline ff61621cea4897c161f8b69f2d4ea21c https://www.encodeproject.org/files/ENCFF345KFF/@@download/ENCFF345KFF.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF635FMD bigWig fold change over control ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF124TQP, ENCFF587NFZ 860567978 ENCODE Processing Pipeline 0b4826bcd99a476264054e792ee5d2cc https://www.encodeproject.org/files/ENCFF635FMD/@@download/ENCFF635FMD.bigWig hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF311QYP bigWig fold change over control ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF124TQP, ENCFF132XOC, ENCFF587NFZ 1287701680 ENCODE Processing Pipeline 0474c2251916e9599868b8af1b32d45d https://www.encodeproject.org/files/ENCFF311QYP/@@download/ENCFF311QYP.bigWig hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF815VGW bigBed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF170VIW 13308859 ENCODE Processing Pipeline b54f9b2f096bab75012cbd060119a641 https://www.encodeproject.org/files/ENCFF815VGW/@@download/ENCFF815VGW.bigBed hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF776UTN bed narrowPeak conservative idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF170VIW, ENCFF345KFF, ENCFF369MAB 230173 ENCODE Processing Pipeline d2dc072bac32b1a8a4b80447f779b60a https://www.encodeproject.org/files/ENCFF776UTN/@@download/ENCFF776UTN.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF207HGO bigBed narrowPeak conservative idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF399BCX 525023 ENCODE Processing Pipeline ee2719b247a646b0ba8e7adc553d0ebf https://www.encodeproject.org/files/ENCFF207HGO/@@download/ENCFF207HGO.bigBed hg19 released file validation error, low read depth, missing genetic modification characterization mismatched status, mismatched file status ENCFF793VCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF963CYO 590218 ENCODE Processing Pipeline d021bfcd60895e79ff85db3713aa65d7 https://www.encodeproject.org/files/ENCFF793VCZ/@@download/ENCFF793VCZ.bigBed hg19 released file validation error, low read depth, missing genetic modification characterization mismatched status, mismatched file status ENCFF968AVX bam unfiltered alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 100 ENCFF482ODR, ENCFF643CGH, ENCFF987YBA 3746599648 ENCODE Processing Pipeline 9545359b3a8f6e09192731d55cf9387a https://www.encodeproject.org/files/ENCFF968AVX/@@download/ENCFF968AVX.bam GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF161JEL bam unfiltered alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF703DNA, ENCFF958CZA 4791520453 ENCODE Processing Pipeline c18c2bc074a41cbcb505da5c709f4100 https://www.encodeproject.org/files/ENCFF161JEL/@@download/ENCFF161JEL.bam GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF047IWR bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 100 ENCFF482ODR, ENCFF643CGH, ENCFF987YBA 3050785616 ENCODE Processing Pipeline 8936c9d137f75beb9801c03330b6af1e https://www.encodeproject.org/files/ENCFF047IWR/@@download/ENCFF047IWR.bam GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF662HRL bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF703DNA, ENCFF958CZA 3439373677 ENCODE Processing Pipeline 2345c765358000c245c049a418898537 https://www.encodeproject.org/files/ENCFF662HRL/@@download/ENCFF662HRL.bam GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF567PHN bigWig signal p-value ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF047IWR, ENCFF306LVM 836257230 ENCODE Processing Pipeline a80a272fe5a9360e5d5aaf64eb8ca01d https://www.encodeproject.org/files/ENCFF567PHN/@@download/ENCFF567PHN.bigWig GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF931MMV bigWig signal p-value ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF306LVM, ENCFF662HRL 861291754 ENCODE Processing Pipeline dfb6b59dcdb2cae9f521914332c59cac https://www.encodeproject.org/files/ENCFF931MMV/@@download/ENCFF931MMV.bigWig GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF792POC bigWig signal p-value ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF047IWR, ENCFF306LVM, ENCFF662HRL 1127587473 ENCODE Processing Pipeline 33a9e88ea326721fa3aeb9f508d568ef https://www.encodeproject.org/files/ENCFF792POC/@@download/ENCFF792POC.bigWig GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF871MCF bigWig fold change over control ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF047IWR, ENCFF306LVM 829658810 ENCODE Processing Pipeline 61016c9c05f18390b6b20ad4101836b8 https://www.encodeproject.org/files/ENCFF871MCF/@@download/ENCFF871MCF.bigWig GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF049SHX bigWig fold change over control ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF306LVM, ENCFF662HRL 860205655 ENCODE Processing Pipeline 1e1f6b91fc947b878637c4cd5f284a0f https://www.encodeproject.org/files/ENCFF049SHX/@@download/ENCFF049SHX.bigWig GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF098CBY bigWig fold change over control ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF047IWR, ENCFF306LVM, ENCFF662HRL 1297993510 ENCODE Processing Pipeline cf515aa10f949d90a82a315663436081 https://www.encodeproject.org/files/ENCFF098CBY/@@download/ENCFF098CBY.bigWig GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF255VIQ bigBed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF007YKY 13310512 ENCODE Processing Pipeline 00d3c821270e3ff9d26aa74e45d12ad4 https://www.encodeproject.org/files/ENCFF255VIQ/@@download/ENCFF255VIQ.bigBed GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF822JLL bigBed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF171DGV 13360336 ENCODE Processing Pipeline 07d435fef1623f883f02221699cd1ea9 https://www.encodeproject.org/files/ENCFF822JLL/@@download/ENCFF822JLL.bigBed GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF007YKY bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF047IWR, ENCFF306LVM 6323536 ENCODE Processing Pipeline 0563937b862d4d53151640c42c9642a2 https://www.encodeproject.org/files/ENCFF007YKY/@@download/ENCFF007YKY.bed.gz GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF309OUB bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF047IWR, ENCFF306LVM, ENCFF662HRL 6991139 ENCODE Processing Pipeline dd167a1561914b9ac738499f1a691e10 https://www.encodeproject.org/files/ENCFF309OUB/@@download/ENCFF309OUB.bed.gz GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF171DGV bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF306LVM, ENCFF662HRL 6277653 ENCODE Processing Pipeline 3fd275633ca21c0831c422c18c969680 https://www.encodeproject.org/files/ENCFF171DGV/@@download/ENCFF171DGV.bed.gz GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF014VRD bed narrowPeak conservative idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF007YKY, ENCFF171DGV, ENCFF309OUB, ENCFF419RSJ 231998 ENCODE Processing Pipeline cbf6e087e8c23d649ea371e666b3fb07 https://www.encodeproject.org/files/ENCFF014VRD/@@download/ENCFF014VRD.bed.gz GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF333RKA bigBed narrowPeak conservative idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF014VRD 530388 ENCODE Processing Pipeline 2a1bf1d704f54871e20a020fba0da25d https://www.encodeproject.org/files/ENCFF333RKA/@@download/ENCFF333RKA.bigBed GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF932ULW bigBed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF309OUB 13146598 ENCODE Processing Pipeline 52249ffd13cb8f71a66e31da4f78d13d https://www.encodeproject.org/files/ENCFF932ULW/@@download/ENCFF932ULW.bigBed GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF436DME bed narrowPeak optimal idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF007YKY, ENCFF171DGV, ENCFF309OUB, ENCFF419RSJ 269263 ENCODE Processing Pipeline a24d0901a1740e0003b54864aabf5c15 https://www.encodeproject.org/files/ENCFF436DME/@@download/ENCFF436DME.bed.gz GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF568EWM bigBed narrowPeak optimal idr thresholded peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF436DME 591268 ENCODE Processing Pipeline c7f501c8ef00b5c5335b7a0d32f69583 https://www.encodeproject.org/files/ENCFF568EWM/@@download/ENCFF568EWM.bigBed GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF868YNQ fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF471LIQ 3809382477 Michael Snyder, Stanford 44f97dc5c095542580129b0fe7cace13 SRA:SRR5111230 https://www.encodeproject.org/files/ENCFF868YNQ/@@download/ENCFF868YNQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF471LIQ fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF868YNQ 3934254838 Michael Snyder, Stanford 6fb6bcf75cc29e181c697ed0d3866132 SRA:SRR5111230 https://www.encodeproject.org/files/ENCFF471LIQ/@@download/ENCFF471LIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF199JYM fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF699UWV 2907531802 Michael Snyder, Stanford 3f79449dacb5a42a97fa8e2dfc04e44d SRA:SRR5111231 https://www.encodeproject.org/files/ENCFF199JYM/@@download/ENCFF199JYM.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF699UWV fastq reads ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF199JYM 3279571816 Michael Snyder, Stanford 3853bf98fe33171727b14b929c4cd268 SRA:SRR5111231 https://www.encodeproject.org/files/ENCFF699UWV/@@download/ENCFF699UWV.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF586ZMB bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF699UWV, ENCFF807MUK 5412965233 ENCODE Processing Pipeline 3d3d1afff166aa32fa866681f75e90a8 https://www.encodeproject.org/files/ENCFF586ZMB/@@download/ENCFF586ZMB.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF549EZJ bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF643CGH, ENCFF699UWV 5410690186 ENCODE Processing Pipeline f6212acedc0a170e821b92ddd5f35151 https://www.encodeproject.org/files/ENCFF549EZJ/@@download/ENCFF549EZJ.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF475YMR bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF643CGH, ENCFF868YNQ 7537521957 ENCODE Processing Pipeline c1e7cf08bbe70c45304ab7ecb16a2210 https://www.encodeproject.org/files/ENCFF475YMR/@@download/ENCFF475YMR.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF585ZIJ bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF643CGH, ENCFF699UWV 2764973764 ENCODE Processing Pipeline 73941632302f1dd5e345a99e2c968415 https://www.encodeproject.org/files/ENCFF585ZIJ/@@download/ENCFF585ZIJ.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF609ZXH bam unfiltered alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF807MUK, ENCFF868YNQ 7671545852 ENCODE Processing Pipeline 4e019c28ae68518364e7430c9ed820b3 https://www.encodeproject.org/files/ENCFF609ZXH/@@download/ENCFF609ZXH.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF792KZU bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF699UWV, ENCFF807MUK 2758279333 ENCODE Processing Pipeline 38796987b97f933f37f27315269e6152 https://www.encodeproject.org/files/ENCFF792KZU/@@download/ENCFF792KZU.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF241ICI bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF643CGH, ENCFF868YNQ 5311210430 ENCODE Processing Pipeline 4ccb947e5112b4bc38cedb51b1c10975 https://www.encodeproject.org/files/ENCFF241ICI/@@download/ENCFF241ICI.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF744LEM bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF807MUK, ENCFF868YNQ 4994157742 ENCODE Processing Pipeline 517de504b6006063140ff7b595ca5c94 https://www.encodeproject.org/files/ENCFF744LEM/@@download/ENCFF744LEM.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF407SQD bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 1358388821 ENCODE Processing Pipeline 3961a4308f31049822d4f99410cb3405 https://www.encodeproject.org/files/ENCFF407SQD/@@download/ENCFF407SQD.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF962NMS bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 1047009843 ENCODE Processing Pipeline bb8970c3c0e54e08416cfc470a963475 https://www.encodeproject.org/files/ENCFF962NMS/@@download/ENCFF962NMS.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF979CET bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF744LEM, ENCFF792KZU, ENCFF901CND 1904730764 ENCODE Processing Pipeline 7ed5b2c0ed0552675c8fe88cf034e811 https://www.encodeproject.org/files/ENCFF979CET/@@download/ENCFF979CET.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF248VMJ bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 1424404145 ENCODE Processing Pipeline 93c8e021af29cde40309234bb84fa570 https://www.encodeproject.org/files/ENCFF248VMJ/@@download/ENCFF248VMJ.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF756XWM bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 990740611 ENCODE Processing Pipeline bc59f54400fc873259ff038fca0680f3 https://www.encodeproject.org/files/ENCFF756XWM/@@download/ENCFF756XWM.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF806TXV bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF744LEM, ENCFF792KZU, ENCFF901CND 2162032340 ENCODE Processing Pipeline cba87a61c39ae32d6c80709e0eb3382e https://www.encodeproject.org/files/ENCFF806TXV/@@download/ENCFF806TXV.bigWig hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF297SZY bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 6877847 ENCODE Processing Pipeline c2b81806f84ef03fed647b67d570495d https://www.encodeproject.org/files/ENCFF297SZY/@@download/ENCFF297SZY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF272WZJ bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF742SNU 11394760 ENCODE Processing Pipeline f0b49d7b8f1778e935bbaf9cb1c10bae https://www.encodeproject.org/files/ENCFF272WZJ/@@download/ENCFF272WZJ.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF742SNU bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 6734314 ENCODE Processing Pipeline c3c0bbc1f7fd34c2c4379c80b20493de https://www.encodeproject.org/files/ENCFF742SNU/@@download/ENCFF742SNU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF536TXK bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF297SZY 12715573 ENCODE Processing Pipeline 4cd151a5b4b6fac0a37ac73772f00436 https://www.encodeproject.org/files/ENCFF536TXK/@@download/ENCFF536TXK.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF321DBH bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF592WAL, ENCFF744LEM, ENCFF792KZU, ENCFF901CND 7239275 ENCODE Processing Pipeline 77d0d1ce18e4c6d53b3fa9cbdd4cc887 https://www.encodeproject.org/files/ENCFF321DBH/@@download/ENCFF321DBH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF501JIG bed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF297SZY, ENCFF321DBH, ENCFF742SNU 203868 ENCODE Processing Pipeline 71633b43918531b43bfe0ba56a97a8e9 https://www.encodeproject.org/files/ENCFF501JIG/@@download/ENCFF501JIG.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF174DDQ bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF321DBH 13267238 ENCODE Processing Pipeline c8597b940a4b1b36d359a2f9e1c3209e https://www.encodeproject.org/files/ENCFF174DDQ/@@download/ENCFF174DDQ.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF933WSV bigBed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF350TYT 418728 ENCODE Processing Pipeline ee8fc03f47925f8ba2dcab7bb14663ce https://www.encodeproject.org/files/ENCFF933WSV/@@download/ENCFF933WSV.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF357WYN bed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF297SZY, ENCFF321DBH, ENCFF742SNU 335989 ENCODE Processing Pipeline 2daa2dcb35564976ae966e9a8f326dce https://www.encodeproject.org/files/ENCFF357WYN/@@download/ENCFF357WYN.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF744RZX bigBed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF680VWV 754991 ENCODE Processing Pipeline 818a825740ca160750cd812e3db59aa4 https://www.encodeproject.org/files/ENCFF744RZX/@@download/ENCFF744RZX.bigBed hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched status, mismatched file status ENCFF015VMS bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF241ICI, ENCFF322NTO, ENCFF666ATR 1497288744 ENCODE Processing Pipeline 575d54d1b13c2213bf386384b2991aa8 https://www.encodeproject.org/files/ENCFF015VMS/@@download/ENCFF015VMS.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF165XIT bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF585ZIJ 983629476 ENCODE Processing Pipeline 1629af10797e2c2caecadedceec0e9d9 https://www.encodeproject.org/files/ENCFF165XIT/@@download/ENCFF165XIT.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF352ODB bigWig signal p-value ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF241ICI, ENCFF322NTO, ENCFF585ZIJ, ENCFF666ATR 1989089012 ENCODE Processing Pipeline 70493ecd1afbf5a1e34e3feee8bfe335 https://www.encodeproject.org/files/ENCFF352ODB/@@download/ENCFF352ODB.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF323AQN bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF241ICI, ENCFF322NTO, ENCFF666ATR 1847586621 ENCODE Processing Pipeline 2f5c9e765e85943add19bc4f0ffe404c https://www.encodeproject.org/files/ENCFF323AQN/@@download/ENCFF323AQN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF776BVO bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF585ZIJ 995971948 ENCODE Processing Pipeline 6cb32e3b00cad16cb81216ead3a69110 https://www.encodeproject.org/files/ENCFF776BVO/@@download/ENCFF776BVO.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF072XFP bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF291LJS 13258062 ENCODE Processing Pipeline 4df6cc019629986bb3f917859cbeacf0 https://www.encodeproject.org/files/ENCFF072XFP/@@download/ENCFF072XFP.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF354XYM bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF758VEQ 12822112 ENCODE Processing Pipeline d2e1c390bbf2e1f9340e4bf16cc13499 https://www.encodeproject.org/files/ENCFF354XYM/@@download/ENCFF354XYM.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF366YYF bigWig fold change over control ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF241ICI, ENCFF322NTO, ENCFF585ZIJ, ENCFF666ATR 2146641828 ENCODE Processing Pipeline 142be5c19dc9b8a3d441010597a9edb2 https://www.encodeproject.org/files/ENCFF366YYF/@@download/ENCFF366YYF.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF758VEQ bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF322NTO, ENCFF585ZIJ 6918198 ENCODE Processing Pipeline df98c3be04b671ef12a941eec12cbd60 https://www.encodeproject.org/files/ENCFF758VEQ/@@download/ENCFF758VEQ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF291LJS bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF241ICI, ENCFF322NTO, ENCFF585ZIJ, ENCFF666ATR 7269479 ENCODE Processing Pipeline 65d667d1a113310c088ea9286232fd1d https://www.encodeproject.org/files/ENCFF291LJS/@@download/ENCFF291LJS.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF289LNM bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF241ICI, ENCFF322NTO, ENCFF666ATR 6667499 ENCODE Processing Pipeline 26d720e963681bc780e0b7dd6ade4f44 https://www.encodeproject.org/files/ENCFF289LNM/@@download/ENCFF289LNM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF217XIT bigBed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF289LNM 11238682 ENCODE Processing Pipeline 4d89d56b55d59ec54084cec21e114452 https://www.encodeproject.org/files/ENCFF217XIT/@@download/ENCFF217XIT.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF823ISD bed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF289LNM, ENCFF291LJS, ENCFF419RSJ, ENCFF758VEQ 212269 ENCODE Processing Pipeline 5186525af18766b67a7a600aae5d08fb https://www.encodeproject.org/files/ENCFF823ISD/@@download/ENCFF823ISD.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF084IUW bed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF289LNM, ENCFF291LJS, ENCFF419RSJ, ENCFF758VEQ 349241 ENCODE Processing Pipeline 35a62c991e6daa6ac532e1dd8f033195 https://www.encodeproject.org/files/ENCFF084IUW/@@download/ENCFF084IUW.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF404NHR bigBed narrowPeak conservative idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF823ISD 466657 ENCODE Processing Pipeline c385beb49c359639b4828be0766d874f https://www.encodeproject.org/files/ENCFF404NHR/@@download/ENCFF404NHR.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF480IWS bigBed narrowPeak optimal idr thresholded peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF084IUW 710546 ENCODE Processing Pipeline 8023a90b06d165a02a7298229bdeb0fd https://www.encodeproject.org/files/ENCFF480IWS/@@download/ENCFF480IWS.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF120FUK bam unfiltered alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVO, ENCFF807MUK 1005261629 ENCODE Processing Pipeline aa18fb825baddf65d8531e9a51c7e79f https://www.encodeproject.org/files/ENCFF120FUK/@@download/ENCFF120FUK.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF932UAM bam unfiltered alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 36 ENCFF002EVX, ENCFF807MUK 1277540413 ENCODE Processing Pipeline 0ebc4d56964f3cc33761d5ebc7e75f2c https://www.encodeproject.org/files/ENCFF932UAM/@@download/ENCFF932UAM.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EVO fastq reads ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 1 36 single-ended 802975717 Michael Snyder, Stanford fe53e87d4c644e4f4b387197b51584a4 https://www.encodeproject.org/files/ENCFF002EVO/@@download/ENCFF002EVO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EVX fastq reads ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 1 36 single-ended 1018186130 Michael Snyder, Stanford d16a8e3b16058fe712c4f580ffe5c88a https://www.encodeproject.org/files/ENCFF002EVX/@@download/ENCFF002EVX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF961IJK bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 36 ENCFF002EVX, ENCFF807MUK 926730349 ENCODE Processing Pipeline a8d2bd30864db11642b29a3c12c84efe https://www.encodeproject.org/files/ENCFF961IJK/@@download/ENCFF961IJK.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF289XMH bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVO, ENCFF807MUK 704359438 ENCODE Processing Pipeline ff5c931567baecea61c4431209d923bd https://www.encodeproject.org/files/ENCFF289XMH/@@download/ENCFF289XMH.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF979DTR bigWig signal p-value ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF289XMH, ENCFF817NEK, ENCFF863VMN, ENCFF961IJK 1094910320 ENCODE Processing Pipeline a254992f0bb161f3a785f0cba393e74d https://www.encodeproject.org/files/ENCFF979DTR/@@download/ENCFF979DTR.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF203CAN bigWig fold change over control ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF289XMH, ENCFF817NEK 393907198 ENCODE Processing Pipeline ef0c817c15a3720febb9fa111d4bdc53 https://www.encodeproject.org/files/ENCFF203CAN/@@download/ENCFF203CAN.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF403TII bigWig signal p-value ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF289XMH, ENCFF817NEK 486227605 ENCODE Processing Pipeline bf345f06b8361d06ab0c7cd48b24b92c https://www.encodeproject.org/files/ENCFF403TII/@@download/ENCFF403TII.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF490YXN bigWig signal p-value ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF863VMN, ENCFF961IJK 524342283 ENCODE Processing Pipeline a060adb00ee45ca2084b094c5a86a4a0 https://www.encodeproject.org/files/ENCFF490YXN/@@download/ENCFF490YXN.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF806XIE bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF863VMN, ENCFF961IJK 4866107 ENCODE Processing Pipeline b67f18aa94c318c85f626133731757e9 https://www.encodeproject.org/files/ENCFF806XIE/@@download/ENCFF806XIE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF794TAJ bigWig fold change over control ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF863VMN, ENCFF961IJK 475161330 ENCODE Processing Pipeline d3da72cc174233e396fda1fd361e81bb https://www.encodeproject.org/files/ENCFF794TAJ/@@download/ENCFF794TAJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF844TSM bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF289XMH, ENCFF817NEK 4355085 ENCODE Processing Pipeline bbecb33e1f7d254df166830e5d22e528 https://www.encodeproject.org/files/ENCFF844TSM/@@download/ENCFF844TSM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF205ZYE bigBed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF844TSM 10850538 ENCODE Processing Pipeline a7c877cb285e8add4b32f006dea2eabf https://www.encodeproject.org/files/ENCFF205ZYE/@@download/ENCFF205ZYE.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF806BRE bigWig fold change over control ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF289XMH, ENCFF817NEK, ENCFF863VMN, ENCFF961IJK 1025199333 ENCODE Processing Pipeline ec90262cf27a82b52d99098a309440a8 https://www.encodeproject.org/files/ENCFF806BRE/@@download/ENCFF806BRE.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF722ERB bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF289XMH, ENCFF817NEK, ENCFF863VMN, ENCFF961IJK 6065095 ENCODE Processing Pipeline bbc6179903822755302f1fc1ec7ce1d1 https://www.encodeproject.org/files/ENCFF722ERB/@@download/ENCFF722ERB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF357VGC bigBed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF806XIE 11207026 ENCODE Processing Pipeline 9ee107cbd18a4be4b50063ec4fbfb0d3 https://www.encodeproject.org/files/ENCFF357VGC/@@download/ENCFF357VGC.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF959AUY bigBed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF722ERB 11502670 ENCODE Processing Pipeline d740ef74e3c6cf34439965e399191cd1 https://www.encodeproject.org/files/ENCFF959AUY/@@download/ENCFF959AUY.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF572AWW bam unfiltered alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVO, ENCFF643CGH 1010682302 ENCODE Processing Pipeline fd640336970ac0bee377efdcd16c7e47 https://www.encodeproject.org/files/ENCFF572AWW/@@download/ENCFF572AWW.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF089ZBM bam unfiltered alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 36 ENCFF002EVX, ENCFF643CGH 1283791111 ENCODE Processing Pipeline e6357e9d3e69184d2445658a141474a0 https://www.encodeproject.org/files/ENCFF089ZBM/@@download/ENCFF089ZBM.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF015EFN bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVO, ENCFF643CGH 704031208 ENCODE Processing Pipeline e9a740698b176e5d47b213f6ad99668a https://www.encodeproject.org/files/ENCFF015EFN/@@download/ENCFF015EFN.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF654JAY bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 36 ENCFF002EVX, ENCFF643CGH 926354738 ENCODE Processing Pipeline fb622d21355346dc2c94583ece83e4e1 https://www.encodeproject.org/files/ENCFF654JAY/@@download/ENCFF654JAY.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF804OXH bigWig signal p-value ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF015EFN, ENCFF536CTV 564426667 ENCODE Processing Pipeline a380e1747640f2808fb78b30e4b7871e https://www.encodeproject.org/files/ENCFF804OXH/@@download/ENCFF804OXH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF981KQP bigWig signal p-value ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF511RLN, ENCFF654JAY 554704203 ENCODE Processing Pipeline 41a5854c7efe8abe2c9ef899071c9692 https://www.encodeproject.org/files/ENCFF981KQP/@@download/ENCFF981KQP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF665AYO bigWig signal p-value ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF015EFN, ENCFF511RLN, ENCFF536CTV, ENCFF654JAY 1122821878 ENCODE Processing Pipeline a490eba96579175fb4594fe258ab1ce2 https://www.encodeproject.org/files/ENCFF665AYO/@@download/ENCFF665AYO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF157RUE bigWig fold change over control ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF015EFN, ENCFF536CTV 392346297 ENCODE Processing Pipeline 95b499ef37689dbd0d39737604f0d88d https://www.encodeproject.org/files/ENCFF157RUE/@@download/ENCFF157RUE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF409EPT bigWig fold change over control ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF511RLN, ENCFF654JAY 495303530 ENCODE Processing Pipeline a150a6f8de86f48a1e3a3364ba5d4e4f https://www.encodeproject.org/files/ENCFF409EPT/@@download/ENCFF409EPT.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF705KGP bigWig fold change over control ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF015EFN, ENCFF511RLN, ENCFF536CTV, ENCFF654JAY 1019685464 ENCODE Processing Pipeline 478ae4fb50a9dde18647d1e6665d9f8c https://www.encodeproject.org/files/ENCFF705KGP/@@download/ENCFF705KGP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF525LGH bigBed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF040PQU 11083418 ENCODE Processing Pipeline 1d0f1ac34638edb4f6b8e7927e4548ea https://www.encodeproject.org/files/ENCFF525LGH/@@download/ENCFF525LGH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF301AWK bigBed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF885UJR 10497160 ENCODE Processing Pipeline 15072fd66074f8a89bec982771b70a72 https://www.encodeproject.org/files/ENCFF301AWK/@@download/ENCFF301AWK.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF166GKK bed narrowPeak optimal idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF040PQU, ENCFF419RSJ, ENCFF885UJR, ENCFF912DUW 70737 ENCODE Processing Pipeline 674e667542f57f3f61ebe683ea4fcf7a https://www.encodeproject.org/files/ENCFF166GKK/@@download/ENCFF166GKK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF322CDM bigBed narrowPeak optimal idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF166GKK 169436 ENCODE Processing Pipeline ada99891019cf9d4aee3412b8667722f https://www.encodeproject.org/files/ENCFF322CDM/@@download/ENCFF322CDM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF885UJR bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF015EFN, ENCFF536CTV 4053141 ENCODE Processing Pipeline 5a3bd696cca7f4da3a53edce7d8195da https://www.encodeproject.org/files/ENCFF885UJR/@@download/ENCFF885UJR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF912DUW bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF015EFN, ENCFF511RLN, ENCFF536CTV, ENCFF654JAY 5868873 ENCODE Processing Pipeline da27bed398535c7d5fe0ffdb1a3eba5d https://www.encodeproject.org/files/ENCFF912DUW/@@download/ENCFF912DUW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF040PQU bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 ENCFF511RLN, ENCFF654JAY 4725133 ENCODE Processing Pipeline 7efae9c656eaf84316e200e0d4c0ec32 https://www.encodeproject.org/files/ENCFF040PQU/@@download/ENCFF040PQU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF024SES bigBed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF912DUW 11486020 ENCODE Processing Pipeline 0fa1a49a3a87ff0b7c365d879ddff856 https://www.encodeproject.org/files/ENCFF024SES/@@download/ENCFF024SES.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF909NYG bigBed narrowPeak conservative idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF179REL 135295 ENCODE Processing Pipeline 2b204c91ec154c331192c512513b3aba https://www.encodeproject.org/files/ENCFF909NYG/@@download/ENCFF909NYG.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF179REL bed narrowPeak conservative idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF040PQU, ENCFF419RSJ, ENCFF885UJR, ENCFF912DUW 47096 ENCODE Processing Pipeline 401f9bce99950600c68ac99a6560cd5a https://www.encodeproject.org/files/ENCFF179REL/@@download/ENCFF179REL.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF311VCK bigBed narrowPeak optimal idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF906IMT 156915 ENCODE Processing Pipeline b41c02084b7ff9361f16894c41d94d96 https://www.encodeproject.org/files/ENCFF311VCK/@@download/ENCFF311VCK.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF881THB bed narrowPeak conservative idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF722ERB, ENCFF806XIE, ENCFF844TSM 41801 ENCODE Processing Pipeline 313daea33767a55e4409aa0c4de4c7a3 https://www.encodeproject.org/files/ENCFF881THB/@@download/ENCFF881THB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF531QXR bigBed narrowPeak conservative idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF881THB 104958 ENCODE Processing Pipeline 361d0785c4b3df03de977415bfb7ed50 https://www.encodeproject.org/files/ENCFF531QXR/@@download/ENCFF531QXR.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF906IMT bed narrowPeak optimal idr thresholded peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF722ERB, ENCFF806XIE, ENCFF844TSM 61616 ENCODE Processing Pipeline 9b285ff6f7a58bdc0f47d6bbb2e49475 https://www.encodeproject.org/files/ENCFF906IMT/@@download/ENCFF906IMT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF988RPN fastq reads ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF061PFW 2364500798 Michael Snyder, Stanford 7b4d2735e6932d25dc7e6fc3f827d7fa SRA:SRR6213538 https://www.encodeproject.org/files/ENCFF988RPN/@@download/ENCFF988RPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF328EBF fastq reads ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF654OPW 1900019109 Michael Snyder, Stanford dbdaf8c3fe7ccd53f0a283a276891192 SRA:SRR6213537 https://www.encodeproject.org/files/ENCFF328EBF/@@download/ENCFF328EBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF654OPW fastq reads ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF328EBF 1921263332 Michael Snyder, Stanford 32349d5c21378d399d41050ea7a5f945 SRA:SRR6213537 https://www.encodeproject.org/files/ENCFF654OPW/@@download/ENCFF654OPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF061PFW fastq reads ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF988RPN 2333072195 Michael Snyder, Stanford 02508760342c4f16d610f096b2c945db SRA:SRR6213538 https://www.encodeproject.org/files/ENCFF061PFW/@@download/ENCFF061PFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF908EMB bam unfiltered alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF328EBF, ENCFF654OPW, ENCFF807MUK 3941709459 ENCODE Processing Pipeline 7264db181a2342c926762c98df705f88 https://www.encodeproject.org/files/ENCFF908EMB/@@download/ENCFF908EMB.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF754GXN bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF328EBF, ENCFF654OPW, ENCFF807MUK 3442424605 ENCODE Processing Pipeline dae0d8e9eebd6b63a7dda99175cbb402 https://www.encodeproject.org/files/ENCFF754GXN/@@download/ENCFF754GXN.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF064EQH bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF328EBF, ENCFF643CGH, ENCFF654OPW 3443961941 ENCODE Processing Pipeline d4c7b7eb8572f50e5e99dc911d2afb41 https://www.encodeproject.org/files/ENCFF064EQH/@@download/ENCFF064EQH.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF743LQT bam unfiltered alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF328EBF, ENCFF643CGH, ENCFF654OPW 3947564691 ENCODE Processing Pipeline dcbecfc74d24dc8191d82805a0f5d45b https://www.encodeproject.org/files/ENCFF743LQT/@@download/ENCFF743LQT.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF811FWV bam unfiltered alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF061PFW, ENCFF807MUK, ENCFF988RPN 4783736138 ENCODE Processing Pipeline e9a4849697d77497309811937db3bf51 https://www.encodeproject.org/files/ENCFF811FWV/@@download/ENCFF811FWV.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF832LBH bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF061PFW, ENCFF807MUK, ENCFF988RPN 4192325347 ENCODE Processing Pipeline 914880e2294abaf9c9724178dd290c61 https://www.encodeproject.org/files/ENCFF832LBH/@@download/ENCFF832LBH.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF900NDU bam unfiltered alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF061PFW, ENCFF643CGH, ENCFF988RPN 4791113770 ENCODE Processing Pipeline 3c8fb7f41ec5916063a63c75441803a7 https://www.encodeproject.org/files/ENCFF900NDU/@@download/ENCFF900NDU.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF493TBA bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF061PFW, ENCFF643CGH, ENCFF988RPN 4194201458 ENCODE Processing Pipeline 49f6fffdf4aec7e0facbbfcf72aa74c2 https://www.encodeproject.org/files/ENCFF493TBA/@@download/ENCFF493TBA.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF290TEH bigWig signal p-value ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF832LBH 1392590180 ENCODE Processing Pipeline af86700cea0848fff4a3e7415547b2df https://www.encodeproject.org/files/ENCFF290TEH/@@download/ENCFF290TEH.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF983UDW bigWig signal p-value ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF754GXN 1161154657 ENCODE Processing Pipeline 333fb1bea0c58a10cb415f7cd4da9eee https://www.encodeproject.org/files/ENCFF983UDW/@@download/ENCFF983UDW.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF186BDY bigWig signal p-value ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF754GXN, ENCFF832LBH 1810492314 ENCODE Processing Pipeline 88aa83b5837d68c38a088e5bead8943b https://www.encodeproject.org/files/ENCFF186BDY/@@download/ENCFF186BDY.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF582VJU bigWig signal p-value ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF493TBA 1387515990 ENCODE Processing Pipeline 22937f98da5e05904cdbfa9fa0b1f701 https://www.encodeproject.org/files/ENCFF582VJU/@@download/ENCFF582VJU.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF399BFO bigBed narrowPeak conservative idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF495ZEC 84938 ENCODE Processing Pipeline 3a85d7377f172f0c2d1c642a6fa7a456 https://www.encodeproject.org/files/ENCFF399BFO/@@download/ENCFF399BFO.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF581AHH bigWig fold change over control ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF832LBH 1360253335 ENCODE Processing Pipeline 62f42db7bd16f45abf6d59537ef9ab9e https://www.encodeproject.org/files/ENCFF581AHH/@@download/ENCFF581AHH.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF849JLW bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF832LBH 6354177 ENCODE Processing Pipeline d8ba14cfd522373dab295632d4bc5885 https://www.encodeproject.org/files/ENCFF849JLW/@@download/ENCFF849JLW.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF457SMH bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF754GXN, ENCFF832LBH 6818210 ENCODE Processing Pipeline 91f775d9cb58091f46c05f7a6c196aa5 https://www.encodeproject.org/files/ENCFF457SMH/@@download/ENCFF457SMH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF235MHA bigWig fold change over control ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF754GXN 1184352029 ENCODE Processing Pipeline 2aed0b7f5152f0f79852816167dd7a10 https://www.encodeproject.org/files/ENCFF235MHA/@@download/ENCFF235MHA.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF495ZEC bed narrowPeak conservative idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF025IJB, ENCFF457SMH, ENCFF849JLW 18488 ENCODE Processing Pipeline ce24e4b0ea16af7b24f3fbc6539ad3dd https://www.encodeproject.org/files/ENCFF495ZEC/@@download/ENCFF495ZEC.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF944LKR bigWig fold change over control ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF754GXN, ENCFF832LBH 1807745859 ENCODE Processing Pipeline 4230b3bfacbec89ccebc20d9191bf8c3 https://www.encodeproject.org/files/ENCFF944LKR/@@download/ENCFF944LKR.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF306ATO bigBed narrowPeak optimal idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF878YVM 110465 ENCODE Processing Pipeline 87022f42f8b783c0be623b55906dfaa8 https://www.encodeproject.org/files/ENCFF306ATO/@@download/ENCFF306ATO.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF975MFQ bigWig signal p-value ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF064EQH 1077547914 ENCODE Processing Pipeline 13dff5a01826f4ae77483abca7d0eede https://www.encodeproject.org/files/ENCFF975MFQ/@@download/ENCFF975MFQ.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF025IJB bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF754GXN 5921658 ENCODE Processing Pipeline 81e38280b5580f7ca0eb259760a03f10 https://www.encodeproject.org/files/ENCFF025IJB/@@download/ENCFF025IJB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF719LAI bigBed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF025IJB 11350418 ENCODE Processing Pipeline 08a10b8dc16ff850eaf26909a4485ed3 https://www.encodeproject.org/files/ENCFF719LAI/@@download/ENCFF719LAI.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF224BVM bigBed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF849JLW 11352723 ENCODE Processing Pipeline a8789eca82a58071a86006d0d07bc330 https://www.encodeproject.org/files/ENCFF224BVM/@@download/ENCFF224BVM.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF609FEB bigBed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF457SMH 11099199 ENCODE Processing Pipeline 05b4e74a19cde3c879ae4927960dc2b2 https://www.encodeproject.org/files/ENCFF609FEB/@@download/ENCFF609FEB.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF878YVM bed narrowPeak optimal idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF025IJB, ENCFF457SMH, ENCFF849JLW 33994 ENCODE Processing Pipeline 1a4b7762d41aaa8846b5693ec8883478 https://www.encodeproject.org/files/ENCFF878YVM/@@download/ENCFF878YVM.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF472KPC bigWig fold change over control ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF493TBA 1308637790 ENCODE Processing Pipeline 142fd61da9eb1f0f49e3aa7b2cb02422 https://www.encodeproject.org/files/ENCFF472KPC/@@download/ENCFF472KPC.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF179RYV bigWig signal p-value ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF064EQH, ENCFF493TBA 1734339784 ENCODE Processing Pipeline 6767c85cbdd61796a6406d815d9ca5ba https://www.encodeproject.org/files/ENCFF179RYV/@@download/ENCFF179RYV.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF308NSL bigWig fold change over control ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF064EQH 1185108171 ENCODE Processing Pipeline 06b928ed0e00b7c428c5d48f4877fd34 https://www.encodeproject.org/files/ENCFF308NSL/@@download/ENCFF308NSL.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF551RWQ bigBed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF736UTH 11363632 ENCODE Processing Pipeline aa96bcd01e0c6fc5dd8ee3526c0df48b https://www.encodeproject.org/files/ENCFF551RWQ/@@download/ENCFF551RWQ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF847LGS bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF493TBA 6350053 ENCODE Processing Pipeline 8229309b8c41ac12c1ba520b4988d39e https://www.encodeproject.org/files/ENCFF847LGS/@@download/ENCFF847LGS.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF133TMS bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF064EQH, ENCFF493TBA 6815719 ENCODE Processing Pipeline 192c26646dab1a5fb8b516278e1ec497 https://www.encodeproject.org/files/ENCFF133TMS/@@download/ENCFF133TMS.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF422YIR bigBed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF133TMS 11085316 ENCODE Processing Pipeline ef6f04352cdc84db515cbb986c623b93 https://www.encodeproject.org/files/ENCFF422YIR/@@download/ENCFF422YIR.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF794VNW bed narrowPeak conservative idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF133TMS, ENCFF419RSJ, ENCFF736UTH, ENCFF847LGS 17931 ENCODE Processing Pipeline 69cbddab4afe03d63b65ad74c2a43bfe https://www.encodeproject.org/files/ENCFF794VNW/@@download/ENCFF794VNW.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF129XQV bigWig fold change over control ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF064EQH, ENCFF493TBA 1806690345 ENCODE Processing Pipeline ac9fa3bf569e8375d9c9e886aa9197a3 https://www.encodeproject.org/files/ENCFF129XQV/@@download/ENCFF129XQV.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF736UTH bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF064EQH 5923602 ENCODE Processing Pipeline 2e0f6ba93a1ca0de73e4489bcc4fb86d https://www.encodeproject.org/files/ENCFF736UTH/@@download/ENCFF736UTH.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF574CBV bigBed narrowPeak conservative idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF794VNW 85724 ENCODE Processing Pipeline 0e26b0d363f6dc301dfc2f6de7bf8cae https://www.encodeproject.org/files/ENCFF574CBV/@@download/ENCFF574CBV.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF400NFQ bigBed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF847LGS 11363034 ENCODE Processing Pipeline 0ba0fba6dfeb7fba490feaf6bd110d50 https://www.encodeproject.org/files/ENCFF400NFQ/@@download/ENCFF400NFQ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF966YLG bed narrowPeak optimal idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF133TMS, ENCFF419RSJ, ENCFF736UTH, ENCFF847LGS 35070 ENCODE Processing Pipeline 6a76af54071cfbe3f688b32726efae40 https://www.encodeproject.org/files/ENCFF966YLG/@@download/ENCFF966YLG.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF325XIP bigBed narrowPeak optimal idr thresholded peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF966YLG 113225 ENCODE Processing Pipeline de1711e65d0f71b0cca98c3da571c837 https://www.encodeproject.org/files/ENCFF325XIP/@@download/ENCFF325XIP.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF505SMZ bam unfiltered alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 36 ENCFF160OSF, ENCFF807MUK 1072361166 ENCODE Processing Pipeline 3e9ff794ce9b51c25c965bf90994f179 https://www.encodeproject.org/files/ENCFF505SMZ/@@download/ENCFF505SMZ.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF822JXF bam unfiltered alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 36 ENCFF742IYU, ENCFF807MUK 1174464489 ENCODE Processing Pipeline 51f92c37c9b111db830e7763f726add5 https://www.encodeproject.org/files/ENCFF822JXF/@@download/ENCFF822JXF.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF742IYU fastq reads ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 1 36 single-ended 950410245 Michael Snyder, Stanford d6fc8ce4639a9ae4d5d026bd7964dd2f SRA:SRR5111635 https://www.encodeproject.org/files/ENCFF742IYU/@@download/ENCFF742IYU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF160OSF fastq reads ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 1 36 single-ended 867466123 Michael Snyder, Stanford adbce4b9567322522fd53e4a26484911 SRA:SRR5111634 https://www.encodeproject.org/files/ENCFF160OSF/@@download/ENCFF160OSF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF975XPX bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 36 ENCFF160OSF, ENCFF807MUK 740507266 ENCODE Processing Pipeline 58489dd9a61cf05f96d9494d9f366231 https://www.encodeproject.org/files/ENCFF975XPX/@@download/ENCFF975XPX.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF938TLX bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 36 ENCFF742IYU, ENCFF807MUK 812369930 ENCODE Processing Pipeline 69fb6b68d9d114b9045fda607fb906a9 https://www.encodeproject.org/files/ENCFF938TLX/@@download/ENCFF938TLX.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF421RVK bigWig signal p-value ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF425JYG, ENCFF938TLX 531752158 ENCODE Processing Pipeline f74ed3b40333a276936f05926a2ae662 https://www.encodeproject.org/files/ENCFF421RVK/@@download/ENCFF421RVK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF794VAO bigWig fold change over control ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF863STQ, ENCFF975XPX 453382133 ENCODE Processing Pipeline ba3e7abd14946b943f289fb419b09fab https://www.encodeproject.org/files/ENCFF794VAO/@@download/ENCFF794VAO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF477IPM bigWig fold change over control ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF425JYG, ENCFF863STQ, ENCFF938TLX, ENCFF975XPX 976949728 ENCODE Processing Pipeline 702df85f346e9445b42ca5004513d64b https://www.encodeproject.org/files/ENCFF477IPM/@@download/ENCFF477IPM.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF600SGS bigWig signal p-value ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF863STQ, ENCFF975XPX 623141294 ENCODE Processing Pipeline 38c2c41ca8c595c60162fa294afa7715 https://www.encodeproject.org/files/ENCFF600SGS/@@download/ENCFF600SGS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF998SYK bigWig signal p-value ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF425JYG, ENCFF863STQ, ENCFF938TLX, ENCFF975XPX 997567332 ENCODE Processing Pipeline 990736be5b215f676f6d2161e7c68c10 https://www.encodeproject.org/files/ENCFF998SYK/@@download/ENCFF998SYK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF459QKT bigWig fold change over control ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF425JYG, ENCFF938TLX 447561742 ENCODE Processing Pipeline 93dc2a6897da79c949f9be696eda282e https://www.encodeproject.org/files/ENCFF459QKT/@@download/ENCFF459QKT.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF953EDE bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF863STQ, ENCFF975XPX 4300896 ENCODE Processing Pipeline cf5b822eccb06180019cbe5566d2f288 https://www.encodeproject.org/files/ENCFF953EDE/@@download/ENCFF953EDE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF787LTE bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF425JYG, ENCFF863STQ, ENCFF938TLX, ENCFF975XPX 5772889 ENCODE Processing Pipeline f95ae228740ca28f84596ae4c8e78988 https://www.encodeproject.org/files/ENCFF787LTE/@@download/ENCFF787LTE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF202MNS bigBed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF787LTE 11657113 ENCODE Processing Pipeline db7d944299b4a7191c74823af0c92eb7 https://www.encodeproject.org/files/ENCFF202MNS/@@download/ENCFF202MNS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF371DJF bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF425JYG, ENCFF938TLX 4494818 ENCODE Processing Pipeline cd3d89c26a1f5e84e8bd37e36a5d534b https://www.encodeproject.org/files/ENCFF371DJF/@@download/ENCFF371DJF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF592YOH bigBed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF953EDE 10854331 ENCODE Processing Pipeline e85de038c93a80106530f041fe9d4366 https://www.encodeproject.org/files/ENCFF592YOH/@@download/ENCFF592YOH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF704QNW bigBed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF371DJF 10990823 ENCODE Processing Pipeline a735e4d56b98e2986d4149c8a2b8f42f https://www.encodeproject.org/files/ENCFF704QNW/@@download/ENCFF704QNW.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF886RIX bam unfiltered alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 36 ENCFF643CGH, ENCFF742IYU 1179779275 ENCODE Processing Pipeline d35d1acbb09898a6074bf130be749f54 https://www.encodeproject.org/files/ENCFF886RIX/@@download/ENCFF886RIX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF201YWK bam unfiltered alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 36 ENCFF160OSF, ENCFF643CGH 1077029738 ENCODE Processing Pipeline 9d7eed189ae98fe301cbc26d9e53953d https://www.encodeproject.org/files/ENCFF201YWK/@@download/ENCFF201YWK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF677VYD bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 36 ENCFF160OSF, ENCFF643CGH 740400891 ENCODE Processing Pipeline 07fbf97301870983aaddc3c976130b37 https://www.encodeproject.org/files/ENCFF677VYD/@@download/ENCFF677VYD.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF533DRO bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 36 ENCFF643CGH, ENCFF742IYU 812251068 ENCODE Processing Pipeline fd7af68987976e3e9208089993dccf90 https://www.encodeproject.org/files/ENCFF533DRO/@@download/ENCFF533DRO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF418QWN bigWig signal p-value ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF677VYD, ENCFF918AJW 538296833 ENCODE Processing Pipeline 5b62d964d15a256f96a6155c04b86e77 https://www.encodeproject.org/files/ENCFF418QWN/@@download/ENCFF418QWN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF426EYK bigWig signal p-value ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF533DRO, ENCFF949XNJ 528395419 ENCODE Processing Pipeline 88c085fad8e2d7164db4e5a0ac0456c1 https://www.encodeproject.org/files/ENCFF426EYK/@@download/ENCFF426EYK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF636EJV bigWig signal p-value ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF533DRO, ENCFF677VYD, ENCFF918AJW, ENCFF949XNJ 968558027 ENCODE Processing Pipeline d1470b4e65da3532aa8ed86f055dd659 https://www.encodeproject.org/files/ENCFF636EJV/@@download/ENCFF636EJV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF967MRB bigWig fold change over control ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF677VYD, ENCFF918AJW 451509961 ENCODE Processing Pipeline 836d2ba46599e53c8a9325dc0a8be3ab https://www.encodeproject.org/files/ENCFF967MRB/@@download/ENCFF967MRB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF608VLT bigWig fold change over control ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF533DRO, ENCFF949XNJ 450795104 ENCODE Processing Pipeline 898ba682c535eee6d321ac08363e0918 https://www.encodeproject.org/files/ENCFF608VLT/@@download/ENCFF608VLT.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF452UOZ bigWig fold change over control ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF533DRO, ENCFF677VYD, ENCFF918AJW, ENCFF949XNJ 1002988734 ENCODE Processing Pipeline 72487071b8a5a026a97937f9fd1c08ba https://www.encodeproject.org/files/ENCFF452UOZ/@@download/ENCFF452UOZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF279PBF bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF677VYD, ENCFF918AJW 4143418 ENCODE Processing Pipeline e88bb2e8752b6d13cd50f5671f2179e2 https://www.encodeproject.org/files/ENCFF279PBF/@@download/ENCFF279PBF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF843ZDE bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF533DRO, ENCFF677VYD, ENCFF918AJW, ENCFF949XNJ 5470557 ENCODE Processing Pipeline 31739a05d2a58966eda22640f305941c https://www.encodeproject.org/files/ENCFF843ZDE/@@download/ENCFF843ZDE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF569GBO bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF533DRO, ENCFF949XNJ 4277530 ENCODE Processing Pipeline 6ea92aa8eb392580e2731f1ba2cf56bb https://www.encodeproject.org/files/ENCFF569GBO/@@download/ENCFF569GBO.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF724VJI bigBed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF279PBF 10619296 ENCODE Processing Pipeline 7e7bcd19113d51211311c975178fb83e https://www.encodeproject.org/files/ENCFF724VJI/@@download/ENCFF724VJI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF497RWM bed narrowPeak conservative idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF279PBF, ENCFF419RSJ, ENCFF569GBO, ENCFF843ZDE 264848 ENCODE Processing Pipeline 9f92bc569c5f2f227a947daa8486ead9 https://www.encodeproject.org/files/ENCFF497RWM/@@download/ENCFF497RWM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF745QMA bigBed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF569GBO 10682947 ENCODE Processing Pipeline 60a593994c0b4c7b7974933f66d996e5 https://www.encodeproject.org/files/ENCFF745QMA/@@download/ENCFF745QMA.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF273ECV bigBed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF843ZDE 11547682 ENCODE Processing Pipeline 9edd4bdd104639dea56e37ae666d93a3 https://www.encodeproject.org/files/ENCFF273ECV/@@download/ENCFF273ECV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF256LDD bed narrowPeak optimal idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF279PBF, ENCFF419RSJ, ENCFF569GBO, ENCFF843ZDE 371078 ENCODE Processing Pipeline 86452ef7a31a2a02091952e73594eff8 https://www.encodeproject.org/files/ENCFF256LDD/@@download/ENCFF256LDD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF994CKX bigBed narrowPeak conservative idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF497RWM 451546 ENCODE Processing Pipeline e8f6f6c60221da1fd245e23ab1a238f7 https://www.encodeproject.org/files/ENCFF994CKX/@@download/ENCFF994CKX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF786YYT bigBed narrowPeak optimal idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF256LDD 583882 ENCODE Processing Pipeline 3c6d7bede50cc7cd8553a6535476937a https://www.encodeproject.org/files/ENCFF786YYT/@@download/ENCFF786YYT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF317QLM bigBed narrowPeak conservative idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF192AMR 438229 ENCODE Processing Pipeline 4c67538cc51b3373739f84bf8bbe5db4 https://www.encodeproject.org/files/ENCFF317QLM/@@download/ENCFF317QLM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF192AMR bed narrowPeak conservative idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF371DJF, ENCFF787LTE, ENCFF953EDE 254243 ENCODE Processing Pipeline 0c86433c207c47f6badb4e9b396e889a https://www.encodeproject.org/files/ENCFF192AMR/@@download/ENCFF192AMR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF635ITV bigBed narrowPeak optimal idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF125YHG 553019 ENCODE Processing Pipeline 7062e44bfaa8a3c92613e7b9df3ab1ae https://www.encodeproject.org/files/ENCFF635ITV/@@download/ENCFF635ITV.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF125YHG bed narrowPeak optimal idr thresholded peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF371DJF, ENCFF787LTE, ENCFF953EDE 351597 ENCODE Processing Pipeline 912d123a1abc3ca45eb6c1e41fea7608 https://www.encodeproject.org/files/ENCFF125YHG/@@download/ENCFF125YHG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF229CUE fastq reads ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF567XFI 3319437915 Michael Snyder, Stanford c391d046fd14aaf4c3e7f67d617de8ff SRA:SRR5111032 https://www.encodeproject.org/files/ENCFF229CUE/@@download/ENCFF229CUE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF567XFI fastq reads ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF229CUE 3329610852 Michael Snyder, Stanford 1159d8ee9de4b3206fbb58a2affb9723 SRA:SRR5111032 https://www.encodeproject.org/files/ENCFF567XFI/@@download/ENCFF567XFI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF482SYF fastq reads ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF218OLA 3026361218 Michael Snyder, Stanford df8b8ce93fd064bf4dd3a0eae59ce897 SRA:SRR5111031 https://www.encodeproject.org/files/ENCFF482SYF/@@download/ENCFF482SYF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF218OLA fastq reads ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF482SYF 3005316981 Michael Snyder, Stanford a36a2fad23c4a8780707d49cb1c439e3 SRA:SRR5111031 https://www.encodeproject.org/files/ENCFF218OLA/@@download/ENCFF218OLA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF852PQB bam unfiltered alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF218OLA, ENCFF482SYF, ENCFF807MUK 6030614421 ENCODE Processing Pipeline 33036b50b05167da2547468b17bfc396 https://www.encodeproject.org/files/ENCFF852PQB/@@download/ENCFF852PQB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF973AIL bam unfiltered alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF218OLA, ENCFF482SYF, ENCFF643CGH 6037334145 ENCODE Processing Pipeline 29ec36e5f8896ebe6d1b443d33912c2f https://www.encodeproject.org/files/ENCFF973AIL/@@download/ENCFF973AIL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF614CHD bam unfiltered alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF229CUE, ENCFF567XFI, ENCFF643CGH 6615593012 ENCODE Processing Pipeline 7c000722aa8c19a6a13205c472aa45d9 https://www.encodeproject.org/files/ENCFF614CHD/@@download/ENCFF614CHD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF635BQK bam unfiltered alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF229CUE, ENCFF567XFI, ENCFF807MUK 6607919409 ENCODE Processing Pipeline 4b8a4806fd407cfa91ab9b291f7acef8 https://www.encodeproject.org/files/ENCFF635BQK/@@download/ENCFF635BQK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF967GZZ bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF218OLA, ENCFF482SYF, ENCFF807MUK 5284549252 ENCODE Processing Pipeline eec2f0fc865cf624a389a427a672df0e https://www.encodeproject.org/files/ENCFF967GZZ/@@download/ENCFF967GZZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF826IAN bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF218OLA, ENCFF482SYF, ENCFF643CGH 5285340328 ENCODE Processing Pipeline ecff940462e0b4f4e95518d7105e7850 https://www.encodeproject.org/files/ENCFF826IAN/@@download/ENCFF826IAN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF033WZV bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF229CUE, ENCFF567XFI, ENCFF643CGH 5774801989 ENCODE Processing Pipeline c29d8840d81c92295aa68112f53a9c5c https://www.encodeproject.org/files/ENCFF033WZV/@@download/ENCFF033WZV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF897XWU bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF229CUE, ENCFF567XFI, ENCFF807MUK 5773356530 ENCODE Processing Pipeline f7f3706fbd7fb7e44eb6834174e2190e https://www.encodeproject.org/files/ENCFF897XWU/@@download/ENCFF897XWU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF057TBG bigWig signal p-value ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF967GZZ 1267770639 ENCODE Processing Pipeline e52396ed7e09fe5febfeaf007e2c1ce8 https://www.encodeproject.org/files/ENCFF057TBG/@@download/ENCFF057TBG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF654VZI bigWig signal p-value ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF897XWU 1460146048 ENCODE Processing Pipeline 5dd2ec873b5a9dfa31a24423ba301446 https://www.encodeproject.org/files/ENCFF654VZI/@@download/ENCFF654VZI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF209CMG bigWig signal p-value ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF897XWU, ENCFF967GZZ 1982562318 ENCODE Processing Pipeline 0e9bc104f26e3430ad29834d83151be0 https://www.encodeproject.org/files/ENCFF209CMG/@@download/ENCFF209CMG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF880JRR bigWig fold change over control ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF897XWU 1564578060 ENCODE Processing Pipeline fc977cc1ea133b8113f132161c89fb5c https://www.encodeproject.org/files/ENCFF880JRR/@@download/ENCFF880JRR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF420OAY bigWig fold change over control ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF967GZZ 1505372950 ENCODE Processing Pipeline ebd5a69638f09445bec71770a0b26681 https://www.encodeproject.org/files/ENCFF420OAY/@@download/ENCFF420OAY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF191MXL bigWig fold change over control ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF897XWU, ENCFF967GZZ 2128605796 ENCODE Processing Pipeline 8c836667a1e3fee276102c601fbc61a9 https://www.encodeproject.org/files/ENCFF191MXL/@@download/ENCFF191MXL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF367OHF bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF897XWU 7147141 ENCODE Processing Pipeline bdca6a0d28cd985c1b6095f8ac70046a https://www.encodeproject.org/files/ENCFF367OHF/@@download/ENCFF367OHF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF345FXA bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF897XWU, ENCFF967GZZ 7244139 ENCODE Processing Pipeline c669301ea75f31ff8dbee2b943524ece https://www.encodeproject.org/files/ENCFF345FXA/@@download/ENCFF345FXA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF182GSY bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF967GZZ 7152868 ENCODE Processing Pipeline 97ff1e2287e7f6ef697cf0a1025cd782 https://www.encodeproject.org/files/ENCFF182GSY/@@download/ENCFF182GSY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF447ZTC bigBed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF367OHF 13179556 ENCODE Processing Pipeline 97d64fdb1a6e66ed56a11c9859118fe8 https://www.encodeproject.org/files/ENCFF447ZTC/@@download/ENCFF447ZTC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF405PUP bigBed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182GSY 13134293 ENCODE Processing Pipeline c86af675afacdcbfee613d4de58c4a60 https://www.encodeproject.org/files/ENCFF405PUP/@@download/ENCFF405PUP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF675AEP bigBed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF345FXA 12937492 ENCODE Processing Pipeline a85ddb2403eebe4e521d004d956f2301 https://www.encodeproject.org/files/ENCFF675AEP/@@download/ENCFF675AEP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF532UBJ bed narrowPeak conservative idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF182GSY, ENCFF345FXA, ENCFF367OHF 452948 ENCODE Processing Pipeline d3cc9aef281c79bb5bab183d83c5cef5 https://www.encodeproject.org/files/ENCFF532UBJ/@@download/ENCFF532UBJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF447EKM bigBed narrowPeak conservative idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF532UBJ 876749 ENCODE Processing Pipeline 3c4d8877accd3e436b78a1a07d3bd093 https://www.encodeproject.org/files/ENCFF447EKM/@@download/ENCFF447EKM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF296EBH bed narrowPeak optimal idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF182GSY, ENCFF345FXA, ENCFF367OHF 504921 ENCODE Processing Pipeline 12bb66f76b1f8107de1a6028109a3726 https://www.encodeproject.org/files/ENCFF296EBH/@@download/ENCFF296EBH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF070YTI bigBed narrowPeak optimal idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF296EBH 960022 ENCODE Processing Pipeline 590ba4cf239302987e3e208d7b82f179 https://www.encodeproject.org/files/ENCFF070YTI/@@download/ENCFF070YTI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF291AVF bigWig signal p-value ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF033WZV 1590709693 ENCODE Processing Pipeline 15e84b5ac60173883e02f05ce0ec009c https://www.encodeproject.org/files/ENCFF291AVF/@@download/ENCFF291AVF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF455FWP bigWig signal p-value ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF826IAN 1472223383 ENCODE Processing Pipeline 78a23525909ae07781e3501be8ae3469 https://www.encodeproject.org/files/ENCFF455FWP/@@download/ENCFF455FWP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF769LRN bigWig signal p-value ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF033WZV, ENCFF826IAN 1984191910 ENCODE Processing Pipeline 4ac33dc11301ba743576ce4712c90e2f https://www.encodeproject.org/files/ENCFF769LRN/@@download/ENCFF769LRN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF654WLC bigWig fold change over control ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF033WZV 1572764839 ENCODE Processing Pipeline 245ea1586466adea5b9630c02c361fcc https://www.encodeproject.org/files/ENCFF654WLC/@@download/ENCFF654WLC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF431RVE bigWig fold change over control ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF826IAN 1489249055 ENCODE Processing Pipeline b1f04adb46083065d9a65b9dbc3988c2 https://www.encodeproject.org/files/ENCFF431RVE/@@download/ENCFF431RVE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF339XUQ bigWig fold change over control ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF033WZV, ENCFF826IAN 2121445969 ENCODE Processing Pipeline 4c5d3140837cde900fa3100adb0e159a https://www.encodeproject.org/files/ENCFF339XUQ/@@download/ENCFF339XUQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF417JUE bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF033WZV 7121546 ENCODE Processing Pipeline dab2b18c5baff9df4c0f0824f3783130 https://www.encodeproject.org/files/ENCFF417JUE/@@download/ENCFF417JUE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF621IDW bigBed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF417JUE 13206175 ENCODE Processing Pipeline 43ae9f280329cdb537d9d207133bf72f https://www.encodeproject.org/files/ENCFF621IDW/@@download/ENCFF621IDW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF401YCF bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF826IAN 7079262 ENCODE Processing Pipeline e21de742d379aa81a268e4fe971fc389 https://www.encodeproject.org/files/ENCFF401YCF/@@download/ENCFF401YCF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF120HWE bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF033WZV, ENCFF826IAN 7270082 ENCODE Processing Pipeline f3cf041a591929b19a251f9a5920cf9a https://www.encodeproject.org/files/ENCFF120HWE/@@download/ENCFF120HWE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF635XAZ bigBed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF401YCF 13123148 ENCODE Processing Pipeline c009e4ef86625466795b1a7111d4c1e1 https://www.encodeproject.org/files/ENCFF635XAZ/@@download/ENCFF635XAZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF217VKS bed narrowPeak conservative idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF120HWE, ENCFF401YCF, ENCFF417JUE, ENCFF419RSJ 462446 ENCODE Processing Pipeline d85f82eca082e3d9ee1eb22978896ee0 https://www.encodeproject.org/files/ENCFF217VKS/@@download/ENCFF217VKS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF487GTO bigBed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF120HWE 12998118 ENCODE Processing Pipeline 61ccba5bb4207515557ed63bb066877e https://www.encodeproject.org/files/ENCFF487GTO/@@download/ENCFF487GTO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF360MLR bigBed narrowPeak conservative idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF217VKS 889069 ENCODE Processing Pipeline 3b7310dfddb849cf694606da66d37616 https://www.encodeproject.org/files/ENCFF360MLR/@@download/ENCFF360MLR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF145USV bed narrowPeak optimal idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF120HWE, ENCFF401YCF, ENCFF417JUE, ENCFF419RSJ 526768 ENCODE Processing Pipeline 375b593d99bf7c936e1494a876b8b5bf https://www.encodeproject.org/files/ENCFF145USV/@@download/ENCFF145USV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF332JWW bigBed narrowPeak optimal idr thresholded peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF145USV 990656 ENCODE Processing Pipeline 068eaa85cf766ca2521f8189da02addf https://www.encodeproject.org/files/ENCFF332JWW/@@download/ENCFF332JWW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF842RSK fastq reads ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 2 1 101 paired-ended 1 ENCFF553HLR 1467698700 Michael Snyder, Stanford 7186a10650d32fd5f5e4a8384aaa3f3d https://www.encodeproject.org/files/ENCFF842RSK/@@download/ENCFF842RSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF685PQB fastq reads ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 1 101 paired-ended 1 ENCFF421SXH 3357749563 Michael Snyder, Stanford d849ffff82fd01d8ca21033e13c43b48 https://www.encodeproject.org/files/ENCFF685PQB/@@download/ENCFF685PQB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF421SXH fastq reads ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 1 101 paired-ended 2 ENCFF685PQB 3418824395 Michael Snyder, Stanford 0dbf23ebc24731ba70b8325a0e03f7a3 https://www.encodeproject.org/files/ENCFF421SXH/@@download/ENCFF421SXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF553HLR fastq reads ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 2 1 101 paired-ended 2 ENCFF842RSK 1466493308 Michael Snyder, Stanford b071ae07e197347423ff7ec9c366281c https://www.encodeproject.org/files/ENCFF553HLR/@@download/ENCFF553HLR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF214DTX bam unfiltered alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF421SXH, ENCFF643CGH, ENCFF685PQB 7398469852 ENCODE Processing Pipeline 9fffee57d80a269d5123a9d43bd653e7 https://www.encodeproject.org/files/ENCFF214DTX/@@download/ENCFF214DTX.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF533XCY bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF421SXH, ENCFF643CGH, ENCFF685PQB 6382287314 ENCODE Processing Pipeline cc56b3d6c3fe849fe38c724bf04877ec https://www.encodeproject.org/files/ENCFF533XCY/@@download/ENCFF533XCY.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF537MFR bam unfiltered alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF421SXH, ENCFF685PQB, ENCFF807MUK 7389172871 ENCODE Processing Pipeline 5fbf5fd1f90c7b6f660aa10fbb36027a https://www.encodeproject.org/files/ENCFF537MFR/@@download/ENCFF537MFR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF221VQA bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF421SXH, ENCFF685PQB, ENCFF807MUK 6378811825 ENCODE Processing Pipeline 15a8cd2a14133539d838bd0a983553be https://www.encodeproject.org/files/ENCFF221VQA/@@download/ENCFF221VQA.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF426FKQ bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 1658437607 ENCODE Processing Pipeline 328850c7777bfc961ca0bc12346f558e https://www.encodeproject.org/files/ENCFF426FKQ/@@download/ENCFF426FKQ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF487WAG bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 1674420167 ENCODE Processing Pipeline 65a2983e25b0ada8c2ec693050591b10 https://www.encodeproject.org/files/ENCFF487WAG/@@download/ENCFF487WAG.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF288OUP bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 6977464 ENCODE Processing Pipeline 424a9903d251a831a5483e190316a385 https://www.encodeproject.org/files/ENCFF288OUP/@@download/ENCFF288OUP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF826AZG bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF288OUP 11151353 ENCODE Processing Pipeline 6ab79bfe49fffdcc7f272e8854506a6d https://www.encodeproject.org/files/ENCFF826AZG/@@download/ENCFF826AZG.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF867KFR bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF533XCY 1508709829 ENCODE Processing Pipeline 3b354c0cbc54e4874f8b97a172089995 https://www.encodeproject.org/files/ENCFF867KFR/@@download/ENCFF867KFR.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF321HPX bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF227XGX 11168898 ENCODE Processing Pipeline 0cf44e0c73dd18a4ed9a397433a27069 https://www.encodeproject.org/files/ENCFF321HPX/@@download/ENCFF321HPX.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF368MYY bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF533XCY 1645966833 ENCODE Processing Pipeline f13bcb1f42965da45a8fe7deac381cf2 https://www.encodeproject.org/files/ENCFF368MYY/@@download/ENCFF368MYY.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF227XGX bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF533XCY 6878311 ENCODE Processing Pipeline fa28698969baec4342339202bf05295b https://www.encodeproject.org/files/ENCFF227XGX/@@download/ENCFF227XGX.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF629DEC fastq reads ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 1 101 paired-ended 1 ENCFF311EFD 1118406880 Michael Snyder, Stanford d12d3d9bb7353c584848c3dbbbcdfdbe https://www.encodeproject.org/files/ENCFF629DEC/@@download/ENCFF629DEC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF311EFD fastq reads ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 1 101 paired-ended 2 ENCFF629DEC 1133810503 Michael Snyder, Stanford 4b31095133939d655129810dcc94ebb9 https://www.encodeproject.org/files/ENCFF311EFD/@@download/ENCFF311EFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF071SPF bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 101 ENCFF311EFD, ENCFF629DEC, ENCFF643CGH 2340746392 ENCODE Processing Pipeline 866dabbd7cd652468947d53ceae0ef71 https://www.encodeproject.org/files/ENCFF071SPF/@@download/ENCFF071SPF.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF757FYN bam unfiltered alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 101 ENCFF311EFD, ENCFF629DEC, ENCFF643CGH 2632680745 ENCODE Processing Pipeline a7482d25cb0694d17ef5f2a121ec71cd https://www.encodeproject.org/files/ENCFF757FYN/@@download/ENCFF757FYN.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF792IVD bam unfiltered alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 101 ENCFF311EFD, ENCFF629DEC, ENCFF807MUK 2630177135 ENCODE Processing Pipeline 9c1014ddfca28ae7ed5a650061a77de4 https://www.encodeproject.org/files/ENCFF792IVD/@@download/ENCFF792IVD.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF222FDM bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 101 ENCFF311EFD, ENCFF629DEC, ENCFF807MUK 2339888170 ENCODE Processing Pipeline 74c3449b3731ed5accce2346a40c2cf3 https://www.encodeproject.org/files/ENCFF222FDM/@@download/ENCFF222FDM.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF969TQL bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF533XCY 1544085938 ENCODE Processing Pipeline 45672e263dc030582e721430f016a7a5 https://www.encodeproject.org/files/ENCFF969TQL/@@download/ENCFF969TQL.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF292TTO bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF071SPF 1181934284 ENCODE Processing Pipeline d80f3bad46c23739601906dfb1d4f31f https://www.encodeproject.org/files/ENCFF292TTO/@@download/ENCFF292TTO.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF917YKK bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF071SPF, ENCFF533XCY 1902963481 ENCODE Processing Pipeline 450f88a2df0c0ab3aa82347e8bd869a0 https://www.encodeproject.org/files/ENCFF917YKK/@@download/ENCFF917YKK.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF520RKV bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF533XCY 1676913297 ENCODE Processing Pipeline 19109010abc4f76bee8c453cc70fd8ee https://www.encodeproject.org/files/ENCFF520RKV/@@download/ENCFF520RKV.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF175YQP bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF071SPF 998676558 ENCODE Processing Pipeline 5267a5116df1d2ac2ef748e6e9647005 https://www.encodeproject.org/files/ENCFF175YQP/@@download/ENCFF175YQP.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF663TXH bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF175PLP 13218073 ENCODE Processing Pipeline 60f455a52b89918e00c97511794355aa https://www.encodeproject.org/files/ENCFF663TXH/@@download/ENCFF663TXH.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF277SUI bed narrowPeak conservative idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF175PLP, ENCFF227XGX, ENCFF419RSJ, ENCFF494HVT 50862 ENCODE Processing Pipeline 0f6843051274232467cc7036d1cc4383 https://www.encodeproject.org/files/ENCFF277SUI/@@download/ENCFF277SUI.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF175PLP bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF071SPF, ENCFF533XCY 7107661 ENCODE Processing Pipeline 10a53f4c21ad2e67b152786a52f88e06 https://www.encodeproject.org/files/ENCFF175PLP/@@download/ENCFF175PLP.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF494HVT bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF071SPF 6230549 ENCODE Processing Pipeline 07db2cfe3190c2595d788215447c330e https://www.encodeproject.org/files/ENCFF494HVT/@@download/ENCFF494HVT.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF881ZPZ bigBed narrowPeak optimal idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF565NIW 263481 ENCODE Processing Pipeline 30ea391b09181bc7da0d753f92b00bdf https://www.encodeproject.org/files/ENCFF881ZPZ/@@download/ENCFF881ZPZ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF872WHG bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF071SPF, ENCFF533XCY 1940119778 ENCODE Processing Pipeline 0aba9c1c3f46ee08cdb5154f41d0b914 https://www.encodeproject.org/files/ENCFF872WHG/@@download/ENCFF872WHG.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF651HXS bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF494HVT 11252960 ENCODE Processing Pipeline 9888634c57f6b70c2752c35441d84026 https://www.encodeproject.org/files/ENCFF651HXS/@@download/ENCFF651HXS.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF607YXV bigBed narrowPeak conservative idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF277SUI 153627 ENCODE Processing Pipeline 0464650797ee05ea9ebfe4c2294ed38b https://www.encodeproject.org/files/ENCFF607YXV/@@download/ENCFF607YXV.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF565NIW bed narrowPeak optimal idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF175PLP, ENCFF227XGX, ENCFF419RSJ, ENCFF494HVT 119619 ENCODE Processing Pipeline e606535cd11c3d9b599ce057515a51b2 https://www.encodeproject.org/files/ENCFF565NIW/@@download/ENCFF565NIW.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF480DDS bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF221VQA, ENCFF222FDM 1783530969 ENCODE Processing Pipeline 6fa96428a396c025e026bfc3eb873139 https://www.encodeproject.org/files/ENCFF480DDS/@@download/ENCFF480DDS.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF606BNI bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF222FDM 993700030 ENCODE Processing Pipeline 61e18b665cd7329b93f52f6430105893 https://www.encodeproject.org/files/ENCFF606BNI/@@download/ENCFF606BNI.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF576MFT bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 1589665343 ENCODE Processing Pipeline 0542c13f1f7c8f68272047ec88fff451 https://www.encodeproject.org/files/ENCFF576MFT/@@download/ENCFF576MFT.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF605WTJ bigWig signal p-value ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF222FDM 1099498375 ENCODE Processing Pipeline b2747aa2cc7192821fca893a9097cd9d https://www.encodeproject.org/files/ENCFF605WTJ/@@download/ENCFF605WTJ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF363MBW bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 1651781067 ENCODE Processing Pipeline eec04f192aa5ffda74bdc409d64ff279 https://www.encodeproject.org/files/ENCFF363MBW/@@download/ENCFF363MBW.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF399VJI bigWig fold change over control ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF221VQA, ENCFF222FDM 1907119418 ENCODE Processing Pipeline b5e50987bc635b0864c503624dc194bc https://www.encodeproject.org/files/ENCFF399VJI/@@download/ENCFF399VJI.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF583MYK bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 6879474 ENCODE Processing Pipeline 76bfd3162a779b60c463d60185ca4503 https://www.encodeproject.org/files/ENCFF583MYK/@@download/ENCFF583MYK.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF157PJB bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF222FDM 6222818 ENCODE Processing Pipeline fb68674266fa4887a6993fc290e8212f https://www.encodeproject.org/files/ENCFF157PJB/@@download/ENCFF157PJB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF015BWE bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF583MYK 11150650 ENCODE Processing Pipeline 8b67f379c9c04d9acb47710fa9f2fd4b https://www.encodeproject.org/files/ENCFF015BWE/@@download/ENCFF015BWE.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF262WKL bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 ENCFF157PJB 11228869 ENCODE Processing Pipeline 51997e4b12962728d939421e66b7bb19 https://www.encodeproject.org/files/ENCFF262WKL/@@download/ENCFF262WKL.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF461FXU bigBed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF283IXO 13204766 ENCODE Processing Pipeline e6e9bbfe5ec64faa45a74cd6dc3bd876 https://www.encodeproject.org/files/ENCFF461FXU/@@download/ENCFF461FXU.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF562XVQ bed narrowPeak conservative idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF001TDO, ENCFF157PJB, ENCFF283IXO, ENCFF583MYK 51483 ENCODE Processing Pipeline 01e2520dacb02e634f41a7eafb52792a https://www.encodeproject.org/files/ENCFF562XVQ/@@download/ENCFF562XVQ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF732OWB bigBed narrowPeak conservative idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF562XVQ 153983 ENCODE Processing Pipeline 0b24144e878a3a5a26920d32ee03acff https://www.encodeproject.org/files/ENCFF732OWB/@@download/ENCFF732OWB.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF385HBO bigBed narrowPeak optimal idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF057XEP 257120 ENCODE Processing Pipeline 1307773ac72f514f868d03fcf62d0c41 https://www.encodeproject.org/files/ENCFF385HBO/@@download/ENCFF385HBO.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF283IXO bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF221VQA, ENCFF222FDM 7107711 ENCODE Processing Pipeline 0dad7cdd4687c9ec960e9bb73b30ee13 https://www.encodeproject.org/files/ENCFF283IXO/@@download/ENCFF283IXO.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF057XEP bed narrowPeak optimal idr thresholded peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1, 3 ENCFF001TDO, ENCFF157PJB, ENCFF283IXO, ENCFF583MYK 116326 ENCODE Processing Pipeline 91f928cf8be768b6e5c9b510846ab878 https://www.encodeproject.org/files/ENCFF057XEP/@@download/ENCFF057XEP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF742XIJ fastq reads ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF696YWZ 2501800847 Michael Snyder, Stanford 8182dc846fcb95e867f5f718cb3e9121 SRA:SRR6214067 https://www.encodeproject.org/files/ENCFF742XIJ/@@download/ENCFF742XIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF581XPH fastq reads ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF568TBG 5786576551 Michael Snyder, Stanford c062695e22f3281cafbf5bcb6a1391a1 SRA:SRR6214066 https://www.encodeproject.org/files/ENCFF581XPH/@@download/ENCFF581XPH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF568TBG fastq reads ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF581XPH 5837032325 Michael Snyder, Stanford f3d4172db0dabd9195090138cbc7d37e SRA:SRR6214066 https://www.encodeproject.org/files/ENCFF568TBG/@@download/ENCFF568TBG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF696YWZ fastq reads ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF742XIJ 2444444253 Michael Snyder, Stanford 7bc7e267e2355721315225e8db81c37f SRA:SRR6214067 https://www.encodeproject.org/files/ENCFF696YWZ/@@download/ENCFF696YWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF277NQS bam unfiltered alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF696YWZ, ENCFF742XIJ, ENCFF807MUK 5662611941 ENCODE Processing Pipeline d33578505686b9e7adcf89f0d0eb348c https://www.encodeproject.org/files/ENCFF277NQS/@@download/ENCFF277NQS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF167BEH bam unfiltered alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF696YWZ, ENCFF742XIJ 5672509955 ENCODE Processing Pipeline 05e207a013c566e5193f017b624a73d3 https://www.encodeproject.org/files/ENCFF167BEH/@@download/ENCFF167BEH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF376SUD bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF696YWZ, ENCFF742XIJ, ENCFF807MUK 4934566905 ENCODE Processing Pipeline e4712163ecbd1e24ec3e9a453996be39 https://www.encodeproject.org/files/ENCFF376SUD/@@download/ENCFF376SUD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF450GYT bam unfiltered alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF568TBG, ENCFF581XPH, ENCFF807MUK 11504857123 ENCODE Processing Pipeline 79e0ef31a467837a0ff79ab45373d67b https://www.encodeproject.org/files/ENCFF450GYT/@@download/ENCFF450GYT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF094CPO bam unfiltered alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF568TBG, ENCFF581XPH, ENCFF643CGH 11521963926 ENCODE Processing Pipeline df41bc322a975988d7a9bb241e8b0d3c https://www.encodeproject.org/files/ENCFF094CPO/@@download/ENCFF094CPO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF827AFP bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF696YWZ, ENCFF742XIJ 4936727139 ENCODE Processing Pipeline 2525ddebc338d0d3f11522ee7a2c98db https://www.encodeproject.org/files/ENCFF827AFP/@@download/ENCFF827AFP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF055AXC bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF568TBG, ENCFF581XPH, ENCFF643CGH 9394488664 ENCODE Processing Pipeline 0fea1e06cd8760bc4ddbb178a225fd17 https://www.encodeproject.org/files/ENCFF055AXC/@@download/ENCFF055AXC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF353HWN bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF568TBG, ENCFF581XPH, ENCFF807MUK 9394132392 ENCODE Processing Pipeline 0d376f2e6a20d76c5ef8ff7dce784d95 https://www.encodeproject.org/files/ENCFF353HWN/@@download/ENCFF353HWN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF612GTS bigWig signal p-value ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF353HWN, ENCFF376SUD 1944151929 ENCODE Processing Pipeline 2f323d986ca5ec08d129f40c273f1d0f https://www.encodeproject.org/files/ENCFF612GTS/@@download/ENCFF612GTS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF055XPQ bigWig signal p-value ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF055AXC 1746732477 ENCODE Processing Pipeline d1d5c8067e533c18b21336d7c2b20936 https://www.encodeproject.org/files/ENCFF055XPQ/@@download/ENCFF055XPQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF379RJI bigWig signal p-value ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF827AFP 1535791473 ENCODE Processing Pipeline 30f108a3201d115fb4e14b697b46ee55 https://www.encodeproject.org/files/ENCFF379RJI/@@download/ENCFF379RJI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF138UTM bigWig fold change over control ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF376SUD 1434498441 ENCODE Processing Pipeline 779c1026778ffa1b533fb2166a1baaf6 https://www.encodeproject.org/files/ENCFF138UTM/@@download/ENCFF138UTM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF945YVD bigWig fold change over control ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF827AFP 1431959779 ENCODE Processing Pipeline f6d728c548b2e4370f9bc23878e5f8ef https://www.encodeproject.org/files/ENCFF945YVD/@@download/ENCFF945YVD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF673BIE bigWig signal p-value ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF055AXC, ENCFF827AFP 1960229574 ENCODE Processing Pipeline 83a41b0e15f90e4914948bf37e7da123 https://www.encodeproject.org/files/ENCFF673BIE/@@download/ENCFF673BIE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF269GUY bigWig signal p-value ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF376SUD 1400818845 ENCODE Processing Pipeline 0b1225ecb579268425455a3b542b9f82 https://www.encodeproject.org/files/ENCFF269GUY/@@download/ENCFF269GUY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF975ORO bigWig signal p-value ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF353HWN 1649851860 ENCODE Processing Pipeline 546243663875b28bd4bfc40bef447ac8 https://www.encodeproject.org/files/ENCFF975ORO/@@download/ENCFF975ORO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF341MIC bigWig fold change over control ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF353HWN 1884226595 ENCODE Processing Pipeline 77fe9775a98cebee07309b30226175c7 https://www.encodeproject.org/files/ENCFF341MIC/@@download/ENCFF341MIC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF617YOM bigWig fold change over control ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF055AXC 1886274714 ENCODE Processing Pipeline d9525c17da0be99fc44745c02e4e3d88 https://www.encodeproject.org/files/ENCFF617YOM/@@download/ENCFF617YOM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF881ROP bigWig fold change over control ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF353HWN, ENCFF376SUD 2342261097 ENCODE Processing Pipeline 74aba87d30b01b49658d3bf046631257 https://www.encodeproject.org/files/ENCFF881ROP/@@download/ENCFF881ROP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF908OIU bigWig fold change over control ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF055AXC, ENCFF827AFP 2363878481 ENCODE Processing Pipeline c42ceca1b6566f045dcce0e9a1db9423 https://www.encodeproject.org/files/ENCFF908OIU/@@download/ENCFF908OIU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF620ANC bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF827AFP 6806041 ENCODE Processing Pipeline 6541a276d187b8eb7f3b4621affc5ddf https://www.encodeproject.org/files/ENCFF620ANC/@@download/ENCFF620ANC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF916ASZ bigBed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF620ANC 13407270 ENCODE Processing Pipeline 2843fcd0f8a02a30116aff949f8ebee3 https://www.encodeproject.org/files/ENCFF916ASZ/@@download/ENCFF916ASZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF720HMJ bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF353HWN 6931121 ENCODE Processing Pipeline e721b375ae7d9ce54e660e5e151484c6 https://www.encodeproject.org/files/ENCFF720HMJ/@@download/ENCFF720HMJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF295QCU bigBed narrowPeak conservative idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF687YXZ 401500 ENCODE Processing Pipeline 72b3b54801be5093f351987623c7a7ac https://www.encodeproject.org/files/ENCFF295QCU/@@download/ENCFF295QCU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF461SHI bed narrowPeak optimal idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF320PPT, ENCFF497JEN, ENCFF720HMJ 360373 ENCODE Processing Pipeline 109d72de4afc5ffa89056c5d884a0d82 https://www.encodeproject.org/files/ENCFF461SHI/@@download/ENCFF461SHI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF186XTC bigBed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF565OZT 13539742 ENCODE Processing Pipeline 2fe1b7d89ebef31cca5471afdb51d0ea https://www.encodeproject.org/files/ENCFF186XTC/@@download/ENCFF186XTC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF320PPT bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF376SUD 6808308 ENCODE Processing Pipeline 3088de2380b15a89b119136770b328ce https://www.encodeproject.org/files/ENCFF320PPT/@@download/ENCFF320PPT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF313YZN bigBed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF720HMJ 11233311 ENCODE Processing Pipeline 3bafa44b0aefa7bedab671e7e15b8a3d https://www.encodeproject.org/files/ENCFF313YZN/@@download/ENCFF313YZN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF687YXZ bed narrowPeak conservative idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF320PPT, ENCFF497JEN, ENCFF720HMJ 200904 ENCODE Processing Pipeline 33f798614233cb31d971e515d4de5bd0 https://www.encodeproject.org/files/ENCFF687YXZ/@@download/ENCFF687YXZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF497JEN bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF353HWN, ENCFF376SUD 7383407 ENCODE Processing Pipeline bef26ac78f62371784d76ab3f904f011 https://www.encodeproject.org/files/ENCFF497JEN/@@download/ENCFF497JEN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF480QWS bigBed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF497JEN 13523651 ENCODE Processing Pipeline 360bfff0b33d8b510c3e1249572f48a3 https://www.encodeproject.org/files/ENCFF480QWS/@@download/ENCFF480QWS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF247CHP bigBed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF320PPT 13399127 ENCODE Processing Pipeline c6e600eb67257d3aa42e686782735314 https://www.encodeproject.org/files/ENCFF247CHP/@@download/ENCFF247CHP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF383TCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF679DYR 636669 ENCODE Processing Pipeline 2c98214778d44876fbe4737c2916e5c1 https://www.encodeproject.org/files/ENCFF383TCZ/@@download/ENCFF383TCZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF565OZT bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF055AXC, ENCFF827AFP 7386692 ENCODE Processing Pipeline b3e9c1dd83df7f6340312a0bbefbf5ac https://www.encodeproject.org/files/ENCFF565OZT/@@download/ENCFF565OZT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF202SCS bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF055AXC 6929076 ENCODE Processing Pipeline 4812dd97486cdd0f21e91f11cd0e58f3 https://www.encodeproject.org/files/ENCFF202SCS/@@download/ENCFF202SCS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF563LZB bigBed narrowPeak optimal idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF461SHI 626494 ENCODE Processing Pipeline e15634b29985cabb1cfd01e93b4fa66c https://www.encodeproject.org/files/ENCFF563LZB/@@download/ENCFF563LZB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF250OSC bigBed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF202SCS 11240688 ENCODE Processing Pipeline 6ae39d36071d9b963e7ab9ebd12823d9 https://www.encodeproject.org/files/ENCFF250OSC/@@download/ENCFF250OSC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF276OHI bed narrowPeak conservative idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF202SCS, ENCFF419RSJ, ENCFF565OZT, ENCFF620ANC 200819 ENCODE Processing Pipeline 23f00d985a09fd5bc245e9c00487f33b https://www.encodeproject.org/files/ENCFF276OHI/@@download/ENCFF276OHI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF183DEW bigBed narrowPeak conservative idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF276OHI 402437 ENCODE Processing Pipeline dc6aa9813427a9eb05d65851bf13e860 https://www.encodeproject.org/files/ENCFF183DEW/@@download/ENCFF183DEW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF679DYR bed narrowPeak optimal idr thresholded peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF202SCS, ENCFF419RSJ, ENCFF565OZT, ENCFF620ANC 367497 ENCODE Processing Pipeline 3c530dca8b80af843127809429a76621 https://www.encodeproject.org/files/ENCFF679DYR/@@download/ENCFF679DYR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF678GYN bam unfiltered alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJK, ENCFF002EJO, ENCFF807MUK 5284183267 ENCODE Processing Pipeline ed48be0775b019a7c4f0e344a53c13bb https://www.encodeproject.org/files/ENCFF678GYN/@@download/ENCFF678GYN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF024TDO bam unfiltered alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJN, ENCFF002EJU, ENCFF807MUK 6066888033 ENCODE Processing Pipeline 1519eaa4df664c259c6c32e9ce6a2341 https://www.encodeproject.org/files/ENCFF024TDO/@@download/ENCFF024TDO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF358BGB bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF285JVV, ENCFF321TUP, ENCFF806YIH 1455943057 ENCODE Processing Pipeline 3f5f5c9803ad045b0d0111033e285a2a https://www.encodeproject.org/files/ENCFF358BGB/@@download/ENCFF358BGB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF359TDO bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF285JVV, ENCFF321TUP, ENCFF717AOP, ENCFF806YIH 1974672658 ENCODE Processing Pipeline a2d8e1f149dc85cb0966f3907fcfd725 https://www.encodeproject.org/files/ENCFF359TDO/@@download/ENCFF359TDO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJK fastq reads ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EJO 2473076589 Michael Snyder, Stanford 32a1d8197101e22e2069392633145494 SRA:SRR5111698 https://www.encodeproject.org/files/ENCFF002EJK/@@download/ENCFF002EJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJN fastq reads ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EJU 2825935498 Michael Snyder, Stanford 884c8cc9e00910aa2cd1e45097262709 SRA:SRR5111697 https://www.encodeproject.org/files/ENCFF002EJN/@@download/ENCFF002EJN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJO fastq reads ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJK 2507041584 Michael Snyder, Stanford adf294e4d1d8a8b2584c2e38a95811da SRA:SRR5111698 https://www.encodeproject.org/files/ENCFF002EJO/@@download/ENCFF002EJO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002EJU fastq reads ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EJN 2802591181 Michael Snyder, Stanford 914ea76000f0f74eef05935057b8ed0a SRA:SRR5111697 https://www.encodeproject.org/files/ENCFF002EJU/@@download/ENCFF002EJU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF800VBI bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF285JVV, ENCFF321TUP, ENCFF806YIH 1623991434 ENCODE Processing Pipeline 2bc17b853b6bbe0deaf2b2ca486693ca https://www.encodeproject.org/files/ENCFF800VBI/@@download/ENCFF800VBI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF527UUN bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF285JVV, ENCFF321TUP, ENCFF717AOP, ENCFF806YIH 2122498125 ENCODE Processing Pipeline be09369a83fa175a834066aa2aaed9c4 https://www.encodeproject.org/files/ENCFF527UUN/@@download/ENCFF527UUN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF051GOZ bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF717AOP 6764931 ENCODE Processing Pipeline 8203e4aaf17fb840fd8bb1e9907c161c https://www.encodeproject.org/files/ENCFF051GOZ/@@download/ENCFF051GOZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF894UDN bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF285JVV, ENCFF321TUP, ENCFF806YIH 7011249 ENCODE Processing Pipeline c835df6798b27111d49fac2ede89d328 https://www.encodeproject.org/files/ENCFF894UDN/@@download/ENCFF894UDN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF440YTM bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF285JVV, ENCFF321TUP, ENCFF717AOP, ENCFF806YIH 7204782 ENCODE Processing Pipeline d1428b78940729d0415502995131503f https://www.encodeproject.org/files/ENCFF440YTM/@@download/ENCFF440YTM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF022FNK bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF051GOZ 13133167 ENCODE Processing Pipeline 8b72caa4403018da9195bdf7912ff518 https://www.encodeproject.org/files/ENCFF022FNK/@@download/ENCFF022FNK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF506RUL bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF440YTM 12992443 ENCODE Processing Pipeline d3b84d309c5edc455118a53b0422e6d7 https://www.encodeproject.org/files/ENCFF506RUL/@@download/ENCFF506RUL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF186WUR bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF894UDN 13387840 ENCODE Processing Pipeline 358e78abe338e5b7117ac70761a143ac https://www.encodeproject.org/files/ENCFF186WUR/@@download/ENCFF186WUR.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF277TYM bed narrowPeak conservative idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF051GOZ, ENCFF440YTM, ENCFF894UDN 673789 ENCODE Processing Pipeline 8e760ae3c8fc9ca07fa9e40b28399704 https://www.encodeproject.org/files/ENCFF277TYM/@@download/ENCFF277TYM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF507OTR bigBed narrowPeak optimal idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF172VGB 1438685 ENCODE Processing Pipeline fc736553a689f987285e67d7505b966e https://www.encodeproject.org/files/ENCFF507OTR/@@download/ENCFF507OTR.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF323EYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF277TYM 1709922 ENCODE Processing Pipeline 54334a6b58d9549c59f523cad1c8f403 https://www.encodeproject.org/files/ENCFF323EYJ/@@download/ENCFF323EYJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF172VGB bed narrowPeak optimal idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF051GOZ, ENCFF440YTM, ENCFF894UDN 677643 ENCODE Processing Pipeline 7358218c36b7f14a0aa7cba4a0388186 https://www.encodeproject.org/files/ENCFF172VGB/@@download/ENCFF172VGB.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF285JVV bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJN, ENCFF002EJU, ENCFF807MUK 5256604060 ENCODE Processing Pipeline a9d45ac7dd95e9757bda33ba2b2bb7c9 https://www.encodeproject.org/files/ENCFF285JVV/@@download/ENCFF285JVV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF717AOP bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJK, ENCFF002EJO, ENCFF807MUK 4138866249 ENCODE Processing Pipeline 06607d96750ce3c014b8e1953505d44e https://www.encodeproject.org/files/ENCFF717AOP/@@download/ENCFF717AOP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF768QHB bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF717AOP 912625348 ENCODE Processing Pipeline 6fa73919908c39661cb45ccc079e34b7 https://www.encodeproject.org/files/ENCFF768QHB/@@download/ENCFF768QHB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF289GSJ bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF285JVV, ENCFF321TUP, ENCFF806YIH 1446582746 ENCODE Processing Pipeline 67ea9c9eaf50cd492229a87d54230ffe https://www.encodeproject.org/files/ENCFF289GSJ/@@download/ENCFF289GSJ.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF723OAB bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF285JVV, ENCFF321TUP, ENCFF717AOP, ENCFF806YIH 1983468048 ENCODE Processing Pipeline a285564de0c27cd763e6f2b17ebffd20 https://www.encodeproject.org/files/ENCFF723OAB/@@download/ENCFF723OAB.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF250BTV bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF717AOP 1100698662 ENCODE Processing Pipeline 18962ab7f9024008ecbc07b7c49d091c https://www.encodeproject.org/files/ENCFF250BTV/@@download/ENCFF250BTV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF582HJY bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF285JVV, ENCFF321TUP, ENCFF806YIH 1612816208 ENCODE Processing Pipeline 825a4a059684c813499bf295c45e044b https://www.encodeproject.org/files/ENCFF582HJY/@@download/ENCFF582HJY.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF446VDD bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF285JVV, ENCFF321TUP, ENCFF717AOP, ENCFF806YIH 2134537071 ENCODE Processing Pipeline 7c2b207c662d624bac14a00b952a7be7 https://www.encodeproject.org/files/ENCFF446VDD/@@download/ENCFF446VDD.bigWig hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF545DEV bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF717AOP 6856137 ENCODE Processing Pipeline caf614f078808a4a4423b09e566e6de2 https://www.encodeproject.org/files/ENCFF545DEV/@@download/ENCFF545DEV.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF278AGF bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF285JVV, ENCFF321TUP, ENCFF717AOP, ENCFF806YIH 7208885 ENCODE Processing Pipeline 4136ce7091f05a2ad3594bc4df4e4b02 https://www.encodeproject.org/files/ENCFF278AGF/@@download/ENCFF278AGF.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF664VEC bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF910IBQ 13387766 ENCODE Processing Pipeline 2991fc7cb02f09f71a5aad3bfa06ef10 https://www.encodeproject.org/files/ENCFF664VEC/@@download/ENCFF664VEC.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF815ZEH bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF545DEV 13134101 ENCODE Processing Pipeline 0dc56e869fea9f3765d1b6c43f82898a https://www.encodeproject.org/files/ENCFF815ZEH/@@download/ENCFF815ZEH.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF910IBQ bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF285JVV, ENCFF321TUP, ENCFF806YIH 7073927 ENCODE Processing Pipeline 7226260dfd8e52e796b0748edb8c33d4 https://www.encodeproject.org/files/ENCFF910IBQ/@@download/ENCFF910IBQ.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF495STA bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF278AGF 12992086 ENCODE Processing Pipeline 29830004620cc5879c00f06ad589e79b https://www.encodeproject.org/files/ENCFF495STA/@@download/ENCFF495STA.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF749VOD bam unfiltered alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJK, ENCFF002EJO, ENCFF643CGH 5290989364 ENCODE Processing Pipeline ae9f843e54678f47ad6488371414b65c https://www.encodeproject.org/files/ENCFF749VOD/@@download/ENCFF749VOD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF624RPG bam unfiltered alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJN, ENCFF002EJU, ENCFF643CGH 6077722179 ENCODE Processing Pipeline 8e2b43ef22b2f1d607b3ba557646ab51 https://www.encodeproject.org/files/ENCFF624RPG/@@download/ENCFF624RPG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF590UVB bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJK, ENCFF002EJO, ENCFF643CGH 4143280111 ENCODE Processing Pipeline 7c7b66898d0f95677967ba790149cbb4 https://www.encodeproject.org/files/ENCFF590UVB/@@download/ENCFF590UVB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF053PLI bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJN, ENCFF002EJU, ENCFF643CGH 5262701911 ENCODE Processing Pipeline b8652f53ae35b883dbf0c8fd426104e8 https://www.encodeproject.org/files/ENCFF053PLI/@@download/ENCFF053PLI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF419XSQ bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF590UVB 967769369 ENCODE Processing Pipeline e1e27613d5cd036b17a6dfb0c13f605b https://www.encodeproject.org/files/ENCFF419XSQ/@@download/ENCFF419XSQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF277MZK bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF053PLI, ENCFF189KJV, ENCFF419UIG 1523541739 ENCODE Processing Pipeline 1e98ea4d558e881da1dab90ed1233110 https://www.encodeproject.org/files/ENCFF277MZK/@@download/ENCFF277MZK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF417YEO bigWig signal p-value ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF053PLI, ENCFF189KJV, ENCFF419UIG, ENCFF590UVB 1775526105 ENCODE Processing Pipeline 675b702eee204d640a49b88be6890b30 https://www.encodeproject.org/files/ENCFF417YEO/@@download/ENCFF417YEO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF997KRD bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF590UVB 1108904722 ENCODE Processing Pipeline 5f6ee82899f2a29a90440e2a11067bc0 https://www.encodeproject.org/files/ENCFF997KRD/@@download/ENCFF997KRD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF935MWE bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF053PLI, ENCFF189KJV, ENCFF419UIG 1626117711 ENCODE Processing Pipeline 76be8466ac7fc4d3cb142d4da36ae209 https://www.encodeproject.org/files/ENCFF935MWE/@@download/ENCFF935MWE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF070LJS bigWig fold change over control ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF053PLI, ENCFF189KJV, ENCFF419UIG, ENCFF590UVB 2139006071 ENCODE Processing Pipeline 29041a9a1cfda74f34bdb302b7c0b932 https://www.encodeproject.org/files/ENCFF070LJS/@@download/ENCFF070LJS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF679GTZ bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF053PLI, ENCFF189KJV, ENCFF419UIG 6966657 ENCODE Processing Pipeline 436b1a9335ef192528ca77233bbc4baf https://www.encodeproject.org/files/ENCFF679GTZ/@@download/ENCFF679GTZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF609LAT bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF590UVB 6834920 ENCODE Processing Pipeline 29f35d24811e85f543e12d234c97a1f1 https://www.encodeproject.org/files/ENCFF609LAT/@@download/ENCFF609LAT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF624PEK bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF053PLI, ENCFF189KJV, ENCFF419UIG, ENCFF590UVB 7236709 ENCODE Processing Pipeline acd43f71a47461ad3d55032bf2cbf884 https://www.encodeproject.org/files/ENCFF624PEK/@@download/ENCFF624PEK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF025IMX bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF609LAT 13224112 ENCODE Processing Pipeline cc62e281fe8184bc4bac048685b9312e https://www.encodeproject.org/files/ENCFF025IMX/@@download/ENCFF025IMX.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF341UHI bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF624PEK 13040832 ENCODE Processing Pipeline 4c717db8c81dc84382d0a8c18e664360 https://www.encodeproject.org/files/ENCFF341UHI/@@download/ENCFF341UHI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF567BJI bed narrowPeak optimal idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF609LAT, ENCFF624PEK, ENCFF679GTZ 693144 ENCODE Processing Pipeline 73e2660acb7856ab01095d3e0d1e4300 https://www.encodeproject.org/files/ENCFF567BJI/@@download/ENCFF567BJI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF070GXJ bigBed narrowPeak optimal idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF567BJI 1762740 ENCODE Processing Pipeline 3fdc2bcc7ee36b90474a1dc25fa36140 https://www.encodeproject.org/files/ENCFF070GXJ/@@download/ENCFF070GXJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF044CEZ bigBed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 ENCFF679GTZ 13341128 ENCODE Processing Pipeline 5f87c13250e9e6ff47f2777ec58af833 https://www.encodeproject.org/files/ENCFF044CEZ/@@download/ENCFF044CEZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF076UHS bed narrowPeak conservative idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF609LAT, ENCFF624PEK, ENCFF679GTZ 686283 ENCODE Processing Pipeline 819819c2bfa3ff5d06eeaffff28d113e https://www.encodeproject.org/files/ENCFF076UHS/@@download/ENCFF076UHS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF810AKA bigBed narrowPeak conservative idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF076UHS 1732004 ENCODE Processing Pipeline f6d2032ea9c78a1affd1ef4cde463171 https://www.encodeproject.org/files/ENCFF810AKA/@@download/ENCFF810AKA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF797CTT bed narrowPeak optimal idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF278AGF, ENCFF545DEV, ENCFF910IBQ 605463 ENCODE Processing Pipeline 46ec547ab531232fa4f25e7db6c1e6b7 https://www.encodeproject.org/files/ENCFF797CTT/@@download/ENCFF797CTT.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF977RMW bed narrowPeak conservative idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF278AGF, ENCFF545DEV, ENCFF910IBQ 578650 ENCODE Processing Pipeline a71a44fd4e23ab05c92389595a0783e6 https://www.encodeproject.org/files/ENCFF977RMW/@@download/ENCFF977RMW.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF007HKU bigBed narrowPeak conservative idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF977RMW 1293007 ENCODE Processing Pipeline 2c0af6a6638bd5e3e759357680babf54 https://www.encodeproject.org/files/ENCFF007HKU/@@download/ENCFF007HKU.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF570IOF bigBed narrowPeak optimal idr thresholded peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF797CTT 1336655 ENCODE Processing Pipeline 169e8b8aec6b1454a3be3b9537122552 https://www.encodeproject.org/files/ENCFF570IOF/@@download/ENCFF570IOF.bigBed hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF002DPL fastq reads ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGC 1481114696 Michael Snyder, Stanford 32b50adfd7369a13c6e8b0cff55d0bd4 SRA:SRR5112370 https://www.encodeproject.org/files/ENCFF002DPL/@@download/ENCFF002DPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF002DPP fastq reads ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGO 3319400152 Michael Snyder, Stanford 8fb7a1b25857a1f93eb4620b02fce726 SRA:SRR5112369 https://www.encodeproject.org/files/ENCFF002DPP/@@download/ENCFF002DPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF002EGC fastq reads ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPL 1515715500 Michael Snyder, Stanford 24fa2b11733944e5d1084f166439ea81 SRA:SRR5112370 https://www.encodeproject.org/files/ENCFF002EGC/@@download/ENCFF002EGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF002EGO fastq reads ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPP 3301886345 Michael Snyder, Stanford 6037366abea9b9f8635591e5fcb74c57 SRA:SRR5112369 https://www.encodeproject.org/files/ENCFF002EGO/@@download/ENCFF002EGO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF541UXW bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPP, ENCFF002EGO, ENCFF807MUK 5342016924 ENCODE Processing Pipeline 17777c98d6e0044395d20fe485ca784e https://www.encodeproject.org/files/ENCFF541UXW/@@download/ENCFF541UXW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF545HSY bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPL, ENCFF002EGC, ENCFF807MUK 2731161346 ENCODE Processing Pipeline bdaeb2893732e3beeed66a0485cdef51 https://www.encodeproject.org/files/ENCFF545HSY/@@download/ENCFF545HSY.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF254OXE bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF459WKK 13207127 ENCODE Processing Pipeline 7ef4464f935c665db333315b339d1ac5 https://www.encodeproject.org/files/ENCFF254OXE/@@download/ENCFF254OXE.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF705YWG bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 1109341753 ENCODE Processing Pipeline cc64169409efcb72bd6ecb0042ea85da https://www.encodeproject.org/files/ENCFF705YWG/@@download/ENCFF705YWG.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF937KOI bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 1293814215 ENCODE Processing Pipeline f7b69b944a062fddfd2bcf658778ce5f https://www.encodeproject.org/files/ENCFF937KOI/@@download/ENCFF937KOI.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF095MOZ bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 1932750727 ENCODE Processing Pipeline b1b6df54eb216f54dd60d118f0486290 https://www.encodeproject.org/files/ENCFF095MOZ/@@download/ENCFF095MOZ.bigWig hg19 archived mild to moderate bottlenecking, low read depth ENCFF699WES bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6803821 ENCODE Processing Pipeline 30f8a9e2d5f84d79f7c8112a89120a22 https://www.encodeproject.org/files/ENCFF699WES/@@download/ENCFF699WES.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF459WKK bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 7190556 ENCODE Processing Pipeline 7c3e23942b93b36f294f4ea77bdfe10c https://www.encodeproject.org/files/ENCFF459WKK/@@download/ENCFF459WKK.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF852GWP bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 960519104 ENCODE Processing Pipeline d9b65a97e2392cd7d652b0256661ef54 https://www.encodeproject.org/files/ENCFF852GWP/@@download/ENCFF852GWP.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF460URK bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 1328185447 ENCODE Processing Pipeline 4f392d33c7d4891916e648f5cc1065c8 https://www.encodeproject.org/files/ENCFF460URK/@@download/ENCFF460URK.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF858NSY bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 2087517108 ENCODE Processing Pipeline ec63f8113ff89537f4bc35d15d011ac5 https://www.encodeproject.org/files/ENCFF858NSY/@@download/ENCFF858NSY.bigWig hg19 archived mild to moderate bottlenecking, low read depth ENCFF422VXS bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 6568266 ENCODE Processing Pipeline ec5244eb4f12cadf3aca61e411e7ab61 https://www.encodeproject.org/files/ENCFF422VXS/@@download/ENCFF422VXS.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF638ARM bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF699WES 13210117 ENCODE Processing Pipeline 0a62e8bcefe5278457593c3069e6bc84 https://www.encodeproject.org/files/ENCFF638ARM/@@download/ENCFF638ARM.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF218MUY bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF422VXS 13382305 ENCODE Processing Pipeline 7a20ac445c495e6835032bf66f462d8a https://www.encodeproject.org/files/ENCFF218MUY/@@download/ENCFF218MUY.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF644YVO bam unfiltered alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPL, ENCFF002EGC, ENCFF643CGH 3323120150 ENCODE Processing Pipeline ef5e58caba41f5c8c3808dd4808a5ede https://www.encodeproject.org/files/ENCFF644YVO/@@download/ENCFF644YVO.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF487SUP bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPL, ENCFF002EGC, ENCFF643CGH 2732703193 ENCODE Processing Pipeline c7a46eba493e27845421b35c488004b3 https://www.encodeproject.org/files/ENCFF487SUP/@@download/ENCFF487SUP.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF362NJN bam unfiltered alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPP, ENCFF002EGO, ENCFF643CGH 7002165950 ENCODE Processing Pipeline 48b19b44d47c07fd9825d13aa0f2ad9e https://www.encodeproject.org/files/ENCFF362NJN/@@download/ENCFF362NJN.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF758LME bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPP, ENCFF002EGO, ENCFF643CGH 5345463115 ENCODE Processing Pipeline c644eafe702ae5e1f220bd1b19b15b01 https://www.encodeproject.org/files/ENCFF758LME/@@download/ENCFF758LME.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF535EXG bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF487SUP, ENCFF910IKB 1046656279 ENCODE Processing Pipeline 90ac4858e0d69446662f9d0850fd6aed https://www.encodeproject.org/files/ENCFF535EXG/@@download/ENCFF535EXG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF080JAQ bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF758LME 1158453726 ENCODE Processing Pipeline 88f5ca23cac04efe7bf79962e861b680 https://www.encodeproject.org/files/ENCFF080JAQ/@@download/ENCFF080JAQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF470GKX bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF487SUP, ENCFF758LME, ENCFF910IKB 1986738276 ENCODE Processing Pipeline a1f07d44adc08f1539d0b60144336c4c https://www.encodeproject.org/files/ENCFF470GKX/@@download/ENCFF470GKX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF393LAG bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF487SUP, ENCFF910IKB 964538445 ENCODE Processing Pipeline 906fe6d71704cf744074b12ea1523702 https://www.encodeproject.org/files/ENCFF393LAG/@@download/ENCFF393LAG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF959WMB bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF758LME 1331575674 ENCODE Processing Pipeline 57b2f040b0a2d90fa26ffbd274dd8042 https://www.encodeproject.org/files/ENCFF959WMB/@@download/ENCFF959WMB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF949TXJ bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF487SUP, ENCFF758LME, ENCFF910IKB 2102245040 ENCODE Processing Pipeline 0ee3dec401537410369b2ce8819c0f1b https://www.encodeproject.org/files/ENCFF949TXJ/@@download/ENCFF949TXJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF385WQK bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF442GMI 11051410 ENCODE Processing Pipeline 4e1838e1351db76436d24265809048c2 https://www.encodeproject.org/files/ENCFF385WQK/@@download/ENCFF385WQK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF442GMI bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF758LME 6682964 ENCODE Processing Pipeline 227aebf171c61609e000a54338069d5d https://www.encodeproject.org/files/ENCFF442GMI/@@download/ENCFF442GMI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF440HZQ bed narrowPeak conservative idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF442GMI, ENCFF482RLB, ENCFF621FNG 229367 ENCODE Processing Pipeline 88c1b7ca7f379fff5cdb27b438c4cf05 https://www.encodeproject.org/files/ENCFF440HZQ/@@download/ENCFF440HZQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF452LDK bed narrowPeak optimal idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF442GMI, ENCFF482RLB, ENCFF621FNG 269540 ENCODE Processing Pipeline c9f1fe671a19405e9d00c16311861993 https://www.encodeproject.org/files/ENCFF452LDK/@@download/ENCFF452LDK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF482RLB bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF487SUP, ENCFF910IKB 6431546 ENCODE Processing Pipeline e71fb4987f4c809fd1ed0afd87f19fea https://www.encodeproject.org/files/ENCFF482RLB/@@download/ENCFF482RLB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF186BVP bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF482RLB 13389882 ENCODE Processing Pipeline f49ee1c9db96d30017e38b109f0c7e61 https://www.encodeproject.org/files/ENCFF186BVP/@@download/ENCFF186BVP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF621FNG bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF487SUP, ENCFF758LME, ENCFF910IKB 7190972 ENCODE Processing Pipeline 74603f2eaa3a7de6d1b8dd547908efc4 https://www.encodeproject.org/files/ENCFF621FNG/@@download/ENCFF621FNG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF353BTM bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF621FNG 13226572 ENCODE Processing Pipeline 235c8d3f49f458e52fb3ab66aeefcd7f https://www.encodeproject.org/files/ENCFF353BTM/@@download/ENCFF353BTM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF295FVL bigBed narrowPeak optimal idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF452LDK 615391 ENCODE Processing Pipeline 819862f3abf953ea8d37a23d2eaff77b https://www.encodeproject.org/files/ENCFF295FVL/@@download/ENCFF295FVL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF919QMR bigBed narrowPeak conservative idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF440HZQ 543278 ENCODE Processing Pipeline 1279c9a993e465f326ed1c71c46a16c9 https://www.encodeproject.org/files/ENCFF919QMR/@@download/ENCFF919QMR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF321TMN bed narrowPeak conservative idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF422VXS, ENCFF459WKK, ENCFF699WES 193656 ENCODE Processing Pipeline 7a44b6ab7a431e0d5f11a87d001d19ef https://www.encodeproject.org/files/ENCFF321TMN/@@download/ENCFF321TMN.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF134ZBV bigBed narrowPeak conservative idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF321TMN 393610 ENCODE Processing Pipeline b396498fc0aac57b4103e31b7f9f9a16 https://www.encodeproject.org/files/ENCFF134ZBV/@@download/ENCFF134ZBV.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF058NMZ bed narrowPeak optimal idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF422VXS, ENCFF459WKK, ENCFF699WES 223612 ENCODE Processing Pipeline 573eb94247a08300f7c022e4b16aeff5 https://www.encodeproject.org/files/ENCFF058NMZ/@@download/ENCFF058NMZ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF781JUI bigBed narrowPeak optimal idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF058NMZ 434684 ENCODE Processing Pipeline e4680ba5c0d3813360bb476f0de7091f https://www.encodeproject.org/files/ENCFF781JUI/@@download/ENCFF781JUI.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF564UBH bigWig signal p-value ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 1943115191 ENCODE Processing Pipeline 2feed3b0b1d66d455a912b9b2afb43ec https://www.encodeproject.org/files/ENCFF564UBH/@@download/ENCFF564UBH.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF591WIF bigWig fold change over control ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 2100194075 ENCODE Processing Pipeline 58ecb789ae7777b19e820456deadd78d https://www.encodeproject.org/files/ENCFF591WIF/@@download/ENCFF591WIF.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF269OJD bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 6428918 ENCODE Processing Pipeline acb90b1069557278322f26bf973da922 https://www.encodeproject.org/files/ENCFF269OJD/@@download/ENCFF269OJD.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF343ROL bigBed narrowPeak conservative idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF297KAT 535006 ENCODE Processing Pipeline 36f139481d353aea4b3a8f25764268e5 https://www.encodeproject.org/files/ENCFF343ROL/@@download/ENCFF343ROL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF778OYJ bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6686411 ENCODE Processing Pipeline 1cf0b24d5c55b03395a83d20ba7bab99 https://www.encodeproject.org/files/ENCFF778OYJ/@@download/ENCFF778OYJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF103ESU bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 7172917 ENCODE Processing Pipeline 5c6dda9141a5d8ac25544ebeb1f7c987 https://www.encodeproject.org/files/ENCFF103ESU/@@download/ENCFF103ESU.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF493WDK bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF103ESU 13197524 ENCODE Processing Pipeline b2947136d275a658bce83561baccf958 https://www.encodeproject.org/files/ENCFF493WDK/@@download/ENCFF493WDK.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF300XUA bed narrowPeak optimal idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF103ESU, ENCFF269OJD, ENCFF778OYJ 267916 ENCODE Processing Pipeline 375188392fd2e30179eec9249863ee49 https://www.encodeproject.org/files/ENCFF300XUA/@@download/ENCFF300XUA.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF988KHX bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF269OJD 13374255 ENCODE Processing Pipeline 178cd5f3e636222f2c6c423c46dfb407 https://www.encodeproject.org/files/ENCFF988KHX/@@download/ENCFF988KHX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF580JOU bigBed narrowPeak optimal idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF300XUA 611563 ENCODE Processing Pipeline c6faebedf3c9b7aa3e7057433264d4de https://www.encodeproject.org/files/ENCFF580JOU/@@download/ENCFF580JOU.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF305PIE bam unfiltered alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPL, ENCFF002EGC, ENCFF807MUK 3321544446 ENCODE Processing Pipeline 338d67b643d662a12066470389c0c03b https://www.encodeproject.org/files/ENCFF305PIE/@@download/ENCFF305PIE.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF594WZU bigBed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF778OYJ 13205951 ENCODE Processing Pipeline c545d32f0e9526015150e093d0689e81 https://www.encodeproject.org/files/ENCFF594WZU/@@download/ENCFF594WZU.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF297KAT bed narrowPeak conservative idr thresholded peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF103ESU, ENCFF269OJD, ENCFF778OYJ 224798 ENCODE Processing Pipeline 4f9500769efa4145b72ab4340e26dbfc https://www.encodeproject.org/files/ENCFF297KAT/@@download/ENCFF297KAT.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF149UFV bam unfiltered alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPP, ENCFF002EGO, ENCFF807MUK 6996644862 ENCODE Processing Pipeline ac758cea8e6bcdbcc02dab307bc84144 https://www.encodeproject.org/files/ENCFF149UFV/@@download/ENCFF149UFV.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF655ROQ fastq reads ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF112OGR 4025237601 Michael Snyder, Stanford 11355a32568c545b329326d51b886579 SRA:SRR5112030 https://www.encodeproject.org/files/ENCFF655ROQ/@@download/ENCFF655ROQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF331FYR fastq reads ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF374FPM 3426748305 Michael Snyder, Stanford fff4b5e533047c48718602be6938c092 SRA:SRR5112029 https://www.encodeproject.org/files/ENCFF331FYR/@@download/ENCFF331FYR.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF374FPM fastq reads ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF331FYR 3547899829 Michael Snyder, Stanford feadb6149f82912430d294e50e02b70b SRA:SRR5112029 https://www.encodeproject.org/files/ENCFF374FPM/@@download/ENCFF374FPM.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF112OGR fastq reads ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF655ROQ 4253353083 Michael Snyder, Stanford 890504859e867e96bc6aa6ac44e468b3 SRA:SRR5112030 https://www.encodeproject.org/files/ENCFF112OGR/@@download/ENCFF112OGR.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF338MLX bam unfiltered alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF112OGR, ENCFF643CGH, ENCFF655ROQ 7957637085 ENCODE Processing Pipeline d399b680576cfe1ec268fd73564b96fb https://www.encodeproject.org/files/ENCFF338MLX/@@download/ENCFF338MLX.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF362FBT bam unfiltered alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF112OGR, ENCFF655ROQ, ENCFF807MUK 7944037233 ENCODE Processing Pipeline fa2e18ef2b592401d5f89bbba8389ca8 https://www.encodeproject.org/files/ENCFF362FBT/@@download/ENCFF362FBT.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF194XDH bam unfiltered alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF331FYR, ENCFF374FPM, ENCFF643CGH 6878897795 ENCODE Processing Pipeline 514e3594ba40b2b3d92804a3a2d38f27 https://www.encodeproject.org/files/ENCFF194XDH/@@download/ENCFF194XDH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF825RWY bam unfiltered alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF331FYR, ENCFF374FPM, ENCFF807MUK 6867119638 ENCODE Processing Pipeline c4ff297924f5ca326a55a45dfcb54da5 https://www.encodeproject.org/files/ENCFF825RWY/@@download/ENCFF825RWY.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF485GAK bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF331FYR, ENCFF374FPM, ENCFF807MUK 5787330460 ENCODE Processing Pipeline ff39cbd865586530c50249a98de2068a https://www.encodeproject.org/files/ENCFF485GAK/@@download/ENCFF485GAK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF095SWL bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF331FYR, ENCFF374FPM, ENCFF643CGH 5791477142 ENCODE Processing Pipeline 5ad6e4abe05f676c0101461bdd768728 https://www.encodeproject.org/files/ENCFF095SWL/@@download/ENCFF095SWL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF240WIT bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF112OGR, ENCFF643CGH, ENCFF655ROQ 6658591338 ENCODE Processing Pipeline e5996e6e5e42fee810cd50551351c533 https://www.encodeproject.org/files/ENCFF240WIT/@@download/ENCFF240WIT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF099KPK bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF112OGR, ENCFF655ROQ, ENCFF807MUK 6653999850 ENCODE Processing Pipeline 2fd3105740a83e62f59a6ff5e3d41eb0 https://www.encodeproject.org/files/ENCFF099KPK/@@download/ENCFF099KPK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF523TZH bigWig signal p-value ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF485GAK 1512550900 ENCODE Processing Pipeline b958f55fae4418f8c71441074d80382d https://www.encodeproject.org/files/ENCFF523TZH/@@download/ENCFF523TZH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF079SEW bigWig fold change over control ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF485GAK 1866708713 ENCODE Processing Pipeline 8bcc0025fa85dc71d60da333849b6a64 https://www.encodeproject.org/files/ENCFF079SEW/@@download/ENCFF079SEW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF074YIH bigWig fold change over control ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF099KPK, ENCFF182WHU, ENCFF485GAK 2683770882 ENCODE Processing Pipeline 59bbf2878b269263ba75657e294caccd https://www.encodeproject.org/files/ENCFF074YIH/@@download/ENCFF074YIH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF637CMU bigWig signal p-value ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF099KPK, ENCFF182WHU 2007087369 ENCODE Processing Pipeline 90adf775a394a77026b66395925759fd https://www.encodeproject.org/files/ENCFF637CMU/@@download/ENCFF637CMU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF620TKQ bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF485GAK 7057976 ENCODE Processing Pipeline 08ea10a75af64b15a0250bfe944252b1 https://www.encodeproject.org/files/ENCFF620TKQ/@@download/ENCFF620TKQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF800JIO bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF099KPK, ENCFF182WHU 7109477 ENCODE Processing Pipeline 680e3d3e1d9c0670ab04c7dcd62bd88f https://www.encodeproject.org/files/ENCFF800JIO/@@download/ENCFF800JIO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF193QDY bigBed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF436FCZ 13155024 ENCODE Processing Pipeline ab5e6562772d6017f49ec75fdcb5a916 https://www.encodeproject.org/files/ENCFF193QDY/@@download/ENCFF193QDY.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF977PXD bed narrowPeak optimal idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF436FCZ, ENCFF620TKQ, ENCFF800JIO 73422 ENCODE Processing Pipeline f9ed97225ea3be221b35a484ac09e7c6 https://www.encodeproject.org/files/ENCFF977PXD/@@download/ENCFF977PXD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF029QUE bigBed narrowPeak optimal idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF977PXD 184505 ENCODE Processing Pipeline b5149587e3d46f1a6e7af5fc23372c7b https://www.encodeproject.org/files/ENCFF029QUE/@@download/ENCFF029QUE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF414FDG bed narrowPeak conservative idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF436FCZ, ENCFF620TKQ, ENCFF800JIO 46102 ENCODE Processing Pipeline 330f5ed9dd6c276c3adf4ce944b00660 https://www.encodeproject.org/files/ENCFF414FDG/@@download/ENCFF414FDG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF248KCL bigWig fold change over control ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF099KPK, ENCFF182WHU 2054741295 ENCODE Processing Pipeline cfd4683cc839f1e51e693cd4434e443b https://www.encodeproject.org/files/ENCFF248KCL/@@download/ENCFF248KCL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF766YCO bigBed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF800JIO 10895853 ENCODE Processing Pipeline 21dca974693c2a54098c53027bd2ae7f https://www.encodeproject.org/files/ENCFF766YCO/@@download/ENCFF766YCO.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF906KWF bigBed narrowPeak conservative idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF414FDG 140920 ENCODE Processing Pipeline 2650be202a6d8eecbb77a5eb2f2bed0d https://www.encodeproject.org/files/ENCFF906KWF/@@download/ENCFF906KWF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF062CHB bigWig signal p-value ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF099KPK, ENCFF182WHU, ENCFF485GAK 1924497708 ENCODE Processing Pipeline 44d6442fb7a38495fe0aa9f51cce65ec https://www.encodeproject.org/files/ENCFF062CHB/@@download/ENCFF062CHB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF436FCZ bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF099KPK, ENCFF182WHU, ENCFF485GAK 7352010 ENCODE Processing Pipeline 25c9c1cc8c1a79412beaef41a0d523d7 https://www.encodeproject.org/files/ENCFF436FCZ/@@download/ENCFF436FCZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF004GIW bigBed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF620TKQ 10904655 ENCODE Processing Pipeline c75c5e8e2a542bf2367812d42ee69813 https://www.encodeproject.org/files/ENCFF004GIW/@@download/ENCFF004GIW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF660XLK bigWig signal p-value ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF095SWL, ENCFF810LLR 1616052557 ENCODE Processing Pipeline 2ac2e0e80eb32e4dba5a563f5584ad79 https://www.encodeproject.org/files/ENCFF660XLK/@@download/ENCFF660XLK.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF899RIR bigWig signal p-value ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF240WIT, ENCFF810LLR 1970598974 ENCODE Processing Pipeline 8a33b00441f65a3dd935ec76edb3bb3f https://www.encodeproject.org/files/ENCFF899RIR/@@download/ENCFF899RIR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF875CRP bigWig signal p-value ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF095SWL, ENCFF240WIT, ENCFF810LLR 1913791699 ENCODE Processing Pipeline 0d1a0762e99fc20776de3555d39766e9 https://www.encodeproject.org/files/ENCFF875CRP/@@download/ENCFF875CRP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF910KSL bigWig fold change over control ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF095SWL, ENCFF810LLR 1898383342 ENCODE Processing Pipeline a58ed8d58b3ab592bc415b97ac698b4d https://www.encodeproject.org/files/ENCFF910KSL/@@download/ENCFF910KSL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF990WIC bigWig fold change over control ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF240WIT, ENCFF810LLR 2028300917 ENCODE Processing Pipeline 87a5733bdf335853401f6edb4b78b6d1 https://www.encodeproject.org/files/ENCFF990WIC/@@download/ENCFF990WIC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF751CCH bigWig fold change over control ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF095SWL, ENCFF240WIT, ENCFF810LLR 2671717158 ENCODE Processing Pipeline 38bc71bbac25181770fde26085b98c07 https://www.encodeproject.org/files/ENCFF751CCH/@@download/ENCFF751CCH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF200FDL bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF095SWL, ENCFF810LLR 6994554 ENCODE Processing Pipeline 817c9a8c1ca736f53eb3152987272028 https://www.encodeproject.org/files/ENCFF200FDL/@@download/ENCFF200FDL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF503ASG bigBed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF808WHP 10908200 ENCODE Processing Pipeline 61532dd03d14c6330124d2196393ea6b https://www.encodeproject.org/files/ENCFF503ASG/@@download/ENCFF503ASG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF871DHQ bed narrowPeak conservative idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF200FDL, ENCFF403FXI, ENCFF419RSJ, ENCFF808WHP 47147 ENCODE Processing Pipeline a8a8eb826c76cec075084f66306d6f68 https://www.encodeproject.org/files/ENCFF871DHQ/@@download/ENCFF871DHQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF210PRU bigBed narrowPeak conservative idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF871DHQ 143468 ENCODE Processing Pipeline e9a72bfc6f77c81961ee2e8e1407b00a https://www.encodeproject.org/files/ENCFF210PRU/@@download/ENCFF210PRU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF395BHY bed narrowPeak optimal idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF200FDL, ENCFF403FXI, ENCFF419RSJ, ENCFF808WHP 80948 ENCODE Processing Pipeline 3a86a18c57c74d494b924ac92b7672ef https://www.encodeproject.org/files/ENCFF395BHY/@@download/ENCFF395BHY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF038TYF bigBed narrowPeak optimal idr thresholded peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF395BHY 196811 ENCODE Processing Pipeline fb0a1e084e94d6815fe8d6c91c84874d https://www.encodeproject.org/files/ENCFF038TYF/@@download/ENCFF038TYF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF808WHP bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF240WIT, ENCFF810LLR 7070341 ENCODE Processing Pipeline de70aedc24d2131fa3c3891a1c487f79 https://www.encodeproject.org/files/ENCFF808WHP/@@download/ENCFF808WHP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF403FXI bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF095SWL, ENCFF240WIT, ENCFF810LLR 7352078 ENCODE Processing Pipeline 7760faf8fe11069257f8e891e42b065c https://www.encodeproject.org/files/ENCFF403FXI/@@download/ENCFF403FXI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF848IAM bigBed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF200FDL 10918736 ENCODE Processing Pipeline adab061e2a53445252c06e6c56dbe294 https://www.encodeproject.org/files/ENCFF848IAM/@@download/ENCFF848IAM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF241ZCA bigBed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF403FXI 13159376 ENCODE Processing Pipeline fe63109529b1239e0e0405571faf7a0b https://www.encodeproject.org/files/ENCFF241ZCA/@@download/ENCFF241ZCA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF116JML bam unfiltered alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 100 ENCFF712YHQ, ENCFF764UGY, ENCFF807MUK 4385045243 ENCODE Processing Pipeline 08402c6d043e140388891d338cf8b64d https://www.encodeproject.org/files/ENCFF116JML/@@download/ENCFF116JML.bam hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF257SXL bam unfiltered alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 100 ENCFF224YLQ, ENCFF736AVM, ENCFF807MUK 4715493172 ENCODE Processing Pipeline 9c660ff951511e125108b8b02b7fbde5 https://www.encodeproject.org/files/ENCFF257SXL/@@download/ENCFF257SXL.bam hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF224YLQ fastq reads ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF736AVM 2102200183 Michael Snyder, Stanford f4bf578e79d89b55c29db9626e779f93 SRA:SRR5112440 https://www.encodeproject.org/files/ENCFF224YLQ/@@download/ENCFF224YLQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF736AVM fastq reads ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF224YLQ 2127802136 Michael Snyder, Stanford dafb1309e2efdd7fff60df466d9690e8 SRA:SRR5112440 https://www.encodeproject.org/files/ENCFF736AVM/@@download/ENCFF736AVM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF712YHQ fastq reads ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF764UGY 1985390606 Michael Snyder, Stanford a2f3839cc8bab73e4c47b4e81efcc26d SRA:SRR5112439 https://www.encodeproject.org/files/ENCFF712YHQ/@@download/ENCFF712YHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF764UGY fastq reads ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF712YHQ 1935779166 Michael Snyder, Stanford 2796459768c2944a0281fe8295cba3a2 SRA:SRR5112439 https://www.encodeproject.org/files/ENCFF764UGY/@@download/ENCFF764UGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF425DVG bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 100 ENCFF712YHQ, ENCFF764UGY, ENCFF807MUK 3698860775 ENCODE Processing Pipeline 92fb0e43dca786c8ff71a9a39ae09877 https://www.encodeproject.org/files/ENCFF425DVG/@@download/ENCFF425DVG.bam hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF366IHT bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 100 ENCFF224YLQ, ENCFF736AVM, ENCFF807MUK 4022646273 ENCODE Processing Pipeline eb1c393642f0d7dc422a5a9b3ffa546d https://www.encodeproject.org/files/ENCFF366IHT/@@download/ENCFF366IHT.bam hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF449SCR bigWig signal p-value ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF425DVG, ENCFF581ZJL 951016081 ENCODE Processing Pipeline 0a320462d58a41ff96f978c5f90cf1ce https://www.encodeproject.org/files/ENCFF449SCR/@@download/ENCFF449SCR.bigWig hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF104LFN bigWig signal p-value ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF366IHT 930842868 ENCODE Processing Pipeline 0fd4956ebc3b0835c08443956ad43003 https://www.encodeproject.org/files/ENCFF104LFN/@@download/ENCFF104LFN.bigWig hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF435QEE bigWig signal p-value ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF366IHT, ENCFF425DVG, ENCFF581ZJL 1770219809 ENCODE Processing Pipeline 0bdf5035c7539bdfc016d1d24a6e1434 https://www.encodeproject.org/files/ENCFF435QEE/@@download/ENCFF435QEE.bigWig hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF817HCH bigWig fold change over control ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF366IHT, ENCFF425DVG, ENCFF581ZJL 2042447361 ENCODE Processing Pipeline 329047470559835194e70fecc0127c16 https://www.encodeproject.org/files/ENCFF817HCH/@@download/ENCFF817HCH.bigWig hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF608HDL bigWig fold change over control ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF425DVG, ENCFF581ZJL 1097179627 ENCODE Processing Pipeline 32ece8524c6c0bb727390bccf995cb94 https://www.encodeproject.org/files/ENCFF608HDL/@@download/ENCFF608HDL.bigWig hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF384WLM bigWig fold change over control ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF366IHT 1091022491 ENCODE Processing Pipeline 8f244de05663cd0819f2bf35084c0e15 https://www.encodeproject.org/files/ENCFF384WLM/@@download/ENCFF384WLM.bigWig hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF286BGV bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF425DVG, ENCFF581ZJL 6176129 ENCODE Processing Pipeline c9a3e2a7d340aab9c112f48ab6fb8c0c https://www.encodeproject.org/files/ENCFF286BGV/@@download/ENCFF286BGV.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF191CDX bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF366IHT, ENCFF425DVG, ENCFF581ZJL 7039698 ENCODE Processing Pipeline 40bc967ea9077eb3884225f23973c5b5 https://www.encodeproject.org/files/ENCFF191CDX/@@download/ENCFF191CDX.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF010VLV bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF366IHT 6282170 ENCODE Processing Pipeline eafd607c9835055ae6d129e2c51038f4 https://www.encodeproject.org/files/ENCFF010VLV/@@download/ENCFF010VLV.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF676HMW bigBed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF286BGV 11188467 ENCODE Processing Pipeline d8832864235493730c72a1b8fa5e9c4b https://www.encodeproject.org/files/ENCFF676HMW/@@download/ENCFF676HMW.bigBed hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF045OVI bigBed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF191CDX 11015005 ENCODE Processing Pipeline d568ad49bcc7dd88ccba3a9e8a5ff87c https://www.encodeproject.org/files/ENCFF045OVI/@@download/ENCFF045OVI.bigBed hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF917WXR bigBed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF010VLV 11093196 ENCODE Processing Pipeline aec4fe5a1416b200f3ba4a9e8a18b9e0 https://www.encodeproject.org/files/ENCFF917WXR/@@download/ENCFF917WXR.bigBed hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF845CXJ bed narrowPeak conservative idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF010VLV, ENCFF191CDX, ENCFF286BGV 35858 ENCODE Processing Pipeline dd7220fae12206cce889215ed857d759 https://www.encodeproject.org/files/ENCFF845CXJ/@@download/ENCFF845CXJ.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF952UUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF849TOV 115671 ENCODE Processing Pipeline 6c7fb1586836e1a70e910c20dd733d4e https://www.encodeproject.org/files/ENCFF952UUZ/@@download/ENCFF952UUZ.bigBed hg19 released file validation error, low read depth, antibody characterized with exemption mismatched status, mismatched file status ENCFF399GAE bed narrowPeak optimal idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF010VLV, ENCFF191CDX, ENCFF286BGV 48865 ENCODE Processing Pipeline b4f54e4c49a4190a7b2f6cf67ec4bb84 https://www.encodeproject.org/files/ENCFF399GAE/@@download/ENCFF399GAE.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF462YOF bigBed narrowPeak optimal idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF756GTC 134538 ENCODE Processing Pipeline d62481716ec15c1036e7e0cdc51a93d1 https://www.encodeproject.org/files/ENCFF462YOF/@@download/ENCFF462YOF.bigBed hg19 released file validation error, low read depth, antibody characterized with exemption mismatched status, mismatched file status ENCFF341WCH bam unfiltered alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 100 ENCFF224YLQ, ENCFF643CGH, ENCFF736AVM 4722150720 ENCODE Processing Pipeline 618d6d59fe0951cc9efd4ff19961a9e5 https://www.encodeproject.org/files/ENCFF341WCH/@@download/ENCFF341WCH.bam GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF153NPR bam unfiltered alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 100 ENCFF643CGH, ENCFF712YHQ, ENCFF764UGY 4391066176 ENCODE Processing Pipeline 85fd41ab23b7dd416457ecdc3d070b92 https://www.encodeproject.org/files/ENCFF153NPR/@@download/ENCFF153NPR.bam GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF245YPG bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 100 ENCFF224YLQ, ENCFF643CGH, ENCFF736AVM 4024874756 ENCODE Processing Pipeline 3e73b997072745f9a29c0dfa85d68680 https://www.encodeproject.org/files/ENCFF245YPG/@@download/ENCFF245YPG.bam GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF980TTL bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 100 ENCFF643CGH, ENCFF712YHQ, ENCFF764UGY 3701706821 ENCODE Processing Pipeline 7168cb9b915287653bef82bb21f2c774 https://www.encodeproject.org/files/ENCFF980TTL/@@download/ENCFF980TTL.bam GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF798SBK bigWig signal p-value ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF910IKB, ENCFF980TTL 1130413037 ENCODE Processing Pipeline e22116adfd9ef667882a1406006caefa https://www.encodeproject.org/files/ENCFF798SBK/@@download/ENCFF798SBK.bigWig GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF120YIH bigWig signal p-value ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF245YPG 954042474 ENCODE Processing Pipeline b3c1a7a19c915d5d819cf496311e8cb3 https://www.encodeproject.org/files/ENCFF120YIH/@@download/ENCFF120YIH.bigWig GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF977FPJ bigWig signal p-value ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF245YPG, ENCFF910IKB, ENCFF980TTL 1593786896 ENCODE Processing Pipeline 63172cbaa6ad843aa597e6e8defe2c06 https://www.encodeproject.org/files/ENCFF977FPJ/@@download/ENCFF977FPJ.bigWig GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF613LUS bigWig fold change over control ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF910IKB, ENCFF980TTL 1101292670 ENCODE Processing Pipeline 3d4ebf6f7cd28783be3a916f1177f49e https://www.encodeproject.org/files/ENCFF613LUS/@@download/ENCFF613LUS.bigWig GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF951BXB bigWig fold change over control ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF245YPG 1090768200 ENCODE Processing Pipeline 974377b02e22fc4f0eb4d1c80cf6c984 https://www.encodeproject.org/files/ENCFF951BXB/@@download/ENCFF951BXB.bigWig GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF770CZV bigWig fold change over control ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF245YPG, ENCFF910IKB, ENCFF980TTL 2030573109 ENCODE Processing Pipeline c4058bd1d240092b676e5697bbc56a66 https://www.encodeproject.org/files/ENCFF770CZV/@@download/ENCFF770CZV.bigWig GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF380JJE bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF910IKB, ENCFF980TTL 6022156 ENCODE Processing Pipeline a26fae2825e5a0bc9477bd97f9d5d85d https://www.encodeproject.org/files/ENCFF380JJE/@@download/ENCFF380JJE.bed.gz GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF990OKM bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF227IZS, ENCFF245YPG 6094093 ENCODE Processing Pipeline 1424c40fecd54cff0924886f8364e5a0 https://www.encodeproject.org/files/ENCFF990OKM/@@download/ENCFF990OKM.bed.gz GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF743YDQ bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF227IZS, ENCFF245YPG, ENCFF910IKB, ENCFF980TTL 6981108 ENCODE Processing Pipeline 2c305fef9fd359fe98355ef6b71b4bea https://www.encodeproject.org/files/ENCFF743YDQ/@@download/ENCFF743YDQ.bed.gz GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF157SAV bigBed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF380JJE 11207845 ENCODE Processing Pipeline 7f316438324b32c4d1d21451fee1a340 https://www.encodeproject.org/files/ENCFF157SAV/@@download/ENCFF157SAV.bigBed GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF822DNT bigBed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF990OKM 11093398 ENCODE Processing Pipeline 110d08906a0d9226bc433d4d8c18e77b https://www.encodeproject.org/files/ENCFF822DNT/@@download/ENCFF822DNT.bigBed GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF946NUT bigBed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF743YDQ 11027098 ENCODE Processing Pipeline 46dd8d3d43a70201c3dcf5a2cbc7858d https://www.encodeproject.org/files/ENCFF946NUT/@@download/ENCFF946NUT.bigBed GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF777MDP bed narrowPeak conservative idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF380JJE, ENCFF419RSJ, ENCFF743YDQ, ENCFF990OKM 35841 ENCODE Processing Pipeline cb5fab9683426991b76e6b7ab06a4c8f https://www.encodeproject.org/files/ENCFF777MDP/@@download/ENCFF777MDP.bed.gz GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF638DSI bigBed narrowPeak conservative idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF777MDP 117923 ENCODE Processing Pipeline aa1938775c0aacbe229bc88c2babddf8 https://www.encodeproject.org/files/ENCFF638DSI/@@download/ENCFF638DSI.bigBed GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF159MQI bed narrowPeak optimal idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF380JJE, ENCFF419RSJ, ENCFF743YDQ, ENCFF990OKM 48563 ENCODE Processing Pipeline 552dcc1a4366dc2b4561aef2a19e6fbc https://www.encodeproject.org/files/ENCFF159MQI/@@download/ENCFF159MQI.bed.gz GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF924ZJX bigBed narrowPeak optimal idr thresholded peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF159MQI 136419 ENCODE Processing Pipeline 67718945b82efa070a5441ec5389cfa5 https://www.encodeproject.org/files/ENCFF924ZJX/@@download/ENCFF924ZJX.bigBed GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF000YRM bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 522117187 Michael Snyder, Stanford 866418d71294be680b3ddb49bb0ffac2 https://www.encodeproject.org/files/ENCFF000YRM/@@download/ENCFF000YRM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000YRP bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VNM 1715981 Michael Snyder, Stanford cd9df685b5b22c5e9eadbca14834805a https://www.encodeproject.org/files/ENCFF000YRP/@@download/ENCFF000YRP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF000YRQ fastq reads ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 904462266 Michael Snyder, Stanford 46b7eb2ea90a1ee8ea4c269723628ecf https://www.encodeproject.org/files/ENCFF000YRQ/@@download/ENCFF000YRQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF000YRS fastq reads ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1175663400 Michael Snyder, Stanford a5ce30b602fc21a2a86e7c1846f5c6b9 https://www.encodeproject.org/files/ENCFF000YRS/@@download/ENCFF000YRS.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF000YRU bigWig signal ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 415171912 Michael Snyder, Stanford c03cc2553fcde30f28191c61a8e62a6a https://www.encodeproject.org/files/ENCFF000YRU/@@download/ENCFF000YRU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000YRY bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 655180961 Michael Snyder, Stanford fea10e7bc7bcc35d641904b4b8d7e0c6 https://www.encodeproject.org/files/ENCFF000YRY/@@download/ENCFF000YRY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001VNM bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 842930 Michael Snyder, Stanford 767c90a87cb34d7f74ae69fbd816cf74 https://www.encodeproject.org/files/ENCFF001VNM/@@download/ENCFF001VNM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF002CWX bed narrowPeak optimal idr thresholded peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 265788 ENCODE Consortium Analysis Working Group 24eba98c3ea79e788b5dc044958e6784 https://www.encodeproject.org/files/ENCFF002CWX/@@download/ENCFF002CWX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF485PHI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CWX 724611 ENCODE Consortium 73240f8ad46ed68d74aa4728d7ea1cfe https://www.encodeproject.org/files/ENCFF485PHI/@@download/ENCFF485PHI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF298EEO bam unfiltered alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRQ, ENCFF807MUK 907970574 ENCODE Processing Pipeline 011b438a578a906edee299fd4e658cb5 https://www.encodeproject.org/files/ENCFF298EEO/@@download/ENCFF298EEO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF805KYR bam unfiltered alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRS, ENCFF807MUK 1167118251 ENCODE Processing Pipeline 612757b3ac959857b1cd5bad813ddedc https://www.encodeproject.org/files/ENCFF805KYR/@@download/ENCFF805KYR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF293UAO bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRS, ENCFF807MUK 724423101 ENCODE Processing Pipeline 5259752700f489349571ea9b70b19c49 https://www.encodeproject.org/files/ENCFF293UAO/@@download/ENCFF293UAO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF389FCP bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRQ, ENCFF807MUK 564116556 ENCODE Processing Pipeline a74d920415de8ed0f2abe692b53052ea https://www.encodeproject.org/files/ENCFF389FCP/@@download/ENCFF389FCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF212TTP bigWig signal p-value ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF287WTN, ENCFF389FCP 239576803 ENCODE Processing Pipeline 7978bd51c64e4ffe8fcdaa4520fd5f5c https://www.encodeproject.org/files/ENCFF212TTP/@@download/ENCFF212TTP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF034HNS bigWig signal p-value ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287WTN, ENCFF293UAO, ENCFF389FCP 230206842 ENCODE Processing Pipeline 4aaf924abb7a3c1cbb77d13e0be7784c https://www.encodeproject.org/files/ENCFF034HNS/@@download/ENCFF034HNS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF823QYP bigWig fold change over control ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF287WTN, ENCFF389FCP 271094907 ENCODE Processing Pipeline 1d6950485d0e36e8e9fa08194fa7c46c https://www.encodeproject.org/files/ENCFF823QYP/@@download/ENCFF823QYP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF176FVU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF908UIY 549593 ENCODE Processing Pipeline 365ec18a60cae17ceeeab2aa3047fb8c https://www.encodeproject.org/files/ENCFF176FVU/@@download/ENCFF176FVU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF846FXF bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287WTN, ENCFF293UAO 4677267 ENCODE Processing Pipeline 5d04eabf7d801827ba9dd428b67b3a2a https://www.encodeproject.org/files/ENCFF846FXF/@@download/ENCFF846FXF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF443ROL bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF370WUU 13048145 ENCODE Processing Pipeline ab06d3f8ea6a7990e8d95b7b11087e49 https://www.encodeproject.org/files/ENCFF443ROL/@@download/ENCFF443ROL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF868PUQ bigWig signal p-value ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287WTN, ENCFF293UAO 221414253 ENCODE Processing Pipeline 8f1d8a710c6d38c3464b423e61f645d8 https://www.encodeproject.org/files/ENCFF868PUQ/@@download/ENCFF868PUQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF390PTY bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF287WTN, ENCFF389FCP 4432438 ENCODE Processing Pipeline ab2e3391da9694f3f4d7e4e25f9d67bf https://www.encodeproject.org/files/ENCFF390PTY/@@download/ENCFF390PTY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF838DLS bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF390PTY 10217929 ENCODE Processing Pipeline 58cac70449050b373ceed12237a7aa87 https://www.encodeproject.org/files/ENCFF838DLS/@@download/ENCFF838DLS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF908UIY bed narrowPeak optimal idr thresholded peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF370WUU, ENCFF390PTY, ENCFF846FXF 245198 ENCODE Processing Pipeline ec29245560e4baf22e4e5e93fac1d297 https://www.encodeproject.org/files/ENCFF908UIY/@@download/ENCFF908UIY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF832WQM bigWig fold change over control ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287WTN, ENCFF293UAO 333685968 ENCODE Processing Pipeline 2bd006cc3b2550f5108b0e0b2206a372 https://www.encodeproject.org/files/ENCFF832WQM/@@download/ENCFF832WQM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF643JYP bigWig fold change over control ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287WTN, ENCFF293UAO, ENCFF389FCP 528276884 ENCODE Processing Pipeline c4cebd0f45aed4b2770f722e3c1fcb0a https://www.encodeproject.org/files/ENCFF643JYP/@@download/ENCFF643JYP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF370WUU bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287WTN, ENCFF293UAO, ENCFF389FCP 5360627 ENCODE Processing Pipeline cccf95223313c722121027af3403818d https://www.encodeproject.org/files/ENCFF370WUU/@@download/ENCFF370WUU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF007BVZ bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF846FXF 10488966 ENCODE Processing Pipeline 2c369d87bc389f829d69342a532bfa3f https://www.encodeproject.org/files/ENCFF007BVZ/@@download/ENCFF007BVZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF014UWV bam unfiltered alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRQ, ENCFF643CGH 911342182 ENCODE Processing Pipeline 419acb98fbbeb50e074879f55ecfa0c3 https://www.encodeproject.org/files/ENCFF014UWV/@@download/ENCFF014UWV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF597ADZ bigWig signal p-value ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF168KTM, ENCFF942FFX 238259185 ENCODE Processing Pipeline c953587630426b79a195b4178c3de30a https://www.encodeproject.org/files/ENCFF597ADZ/@@download/ENCFF597ADZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF168KTM bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRQ, ENCFF643CGH 563390708 ENCODE Processing Pipeline a302eab38c73bb9dbb5daf4c6ae64c72 https://www.encodeproject.org/files/ENCFF168KTM/@@download/ENCFF168KTM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF159CFB bigWig fold change over control ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF168KTM, ENCFF942FFX 268866008 ENCODE Processing Pipeline c97e1f062a2d561bb0b4e290ce282004 https://www.encodeproject.org/files/ENCFF159CFB/@@download/ENCFF159CFB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF036DJU bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023PTJ 10440423 ENCODE Processing Pipeline 061739f6aa93435b7edd3d4af58df651 https://www.encodeproject.org/files/ENCFF036DJU/@@download/ENCFF036DJU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF642KEX bam unfiltered alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRS, ENCFF643CGH 1171461567 ENCODE Processing Pipeline e694c479cd385cd6f672b0d34e08f4d0 https://www.encodeproject.org/files/ENCFF642KEX/@@download/ENCFF642KEX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF299HHL bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRS, ENCFF643CGH 723534974 ENCODE Processing Pipeline 094f08d2915b9d4db76919a59ba37e32 https://www.encodeproject.org/files/ENCFF299HHL/@@download/ENCFF299HHL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF079GUB bigWig signal p-value ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299HHL, ENCFF942FFX 223033943 ENCODE Processing Pipeline ae429fa1569129fc68c78cf821f50d70 https://www.encodeproject.org/files/ENCFF079GUB/@@download/ENCFF079GUB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF509UDO bigWig signal p-value ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF168KTM, ENCFF299HHL, ENCFF942FFX 231225736 ENCODE Processing Pipeline 3674a5cc965e75c262b5ae37611a5fa6 https://www.encodeproject.org/files/ENCFF509UDO/@@download/ENCFF509UDO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF177XGS bigWig fold change over control ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299HHL, ENCFF942FFX 330802733 ENCODE Processing Pipeline 02e3b01603f2690111f3bc2bf0ed505c https://www.encodeproject.org/files/ENCFF177XGS/@@download/ENCFF177XGS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF023PTJ bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299HHL, ENCFF942FFX 4616294 ENCODE Processing Pipeline b5dc212377600b36c85344eddbae0ae6 https://www.encodeproject.org/files/ENCFF023PTJ/@@download/ENCFF023PTJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF093VAP bigWig fold change over control ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF168KTM, ENCFF299HHL, ENCFF942FFX 524491889 ENCODE Processing Pipeline f63c0d46ff4aa4ee73a0a8b3c8398822 https://www.encodeproject.org/files/ENCFF093VAP/@@download/ENCFF093VAP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF642JPJ bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF168KTM, ENCFF942FFX 4442680 ENCODE Processing Pipeline 1c076edd67df6208a4e7f62fc963be72 https://www.encodeproject.org/files/ENCFF642JPJ/@@download/ENCFF642JPJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF688XON bed narrowPeak optimal idr thresholded peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023PTJ, ENCFF314LWQ, ENCFF419RSJ, ENCFF642JPJ 246488 ENCODE Processing Pipeline da91f0a6bf4dc7319b2c220c94ea6655 https://www.encodeproject.org/files/ENCFF688XON/@@download/ENCFF688XON.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF314LWQ bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF168KTM, ENCFF299HHL, ENCFF942FFX 5288698 ENCODE Processing Pipeline 93b6b2c7350ba9dc135184b4b9f9c7a6 https://www.encodeproject.org/files/ENCFF314LWQ/@@download/ENCFF314LWQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF819WZL bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF642JPJ 10289881 ENCODE Processing Pipeline b3e3c3b652aca5522652d4455f07888b https://www.encodeproject.org/files/ENCFF819WZL/@@download/ENCFF819WZL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF796KSA bigBed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF314LWQ 13038790 ENCODE Processing Pipeline 4787bef007335de7a59a965de70ab085 https://www.encodeproject.org/files/ENCFF796KSA/@@download/ENCFF796KSA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF757DKM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF688XON 461167 ENCODE Processing Pipeline 334b3fbe895a8d6c967e294f5b358b36 https://www.encodeproject.org/files/ENCFF757DKM/@@download/ENCFF757DKM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF018KRC bam unfiltered alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF558UNF, ENCFF807MUK, ENCFF979GWR 6043532038 ENCODE Processing Pipeline 2ffb666944c3bdb6a3af59b068207c85 https://www.encodeproject.org/files/ENCFF018KRC/@@download/ENCFF018KRC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF991FTW bam unfiltered alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF615YUR, ENCFF807MUK, ENCFF841SOA 5688810422 ENCODE Processing Pipeline e334557e339aee9fa46cd3cb2dea3d9c https://www.encodeproject.org/files/ENCFF991FTW/@@download/ENCFF991FTW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF615YUR fastq reads ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF841SOA 2611554854 Michael Snyder, Stanford 13178a731116b51b347b7a24dbadaf6c SRA:SRR5112420 https://www.encodeproject.org/files/ENCFF615YUR/@@download/ENCFF615YUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF841SOA fastq reads ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF615YUR 2696397947 Michael Snyder, Stanford bd398a21a2b04856edacb63363ebd950 SRA:SRR5112420 https://www.encodeproject.org/files/ENCFF841SOA/@@download/ENCFF841SOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF558UNF fastq reads ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 1 ENCFF979GWR 2797691116 Michael Snyder, Stanford d89f05d5048930e8444023f8e9a9221d SRA:SRR5112419 https://www.encodeproject.org/files/ENCFF558UNF/@@download/ENCFF558UNF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF979GWR fastq reads ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 2 ENCFF558UNF 2791525636 Michael Snyder, Stanford 75869334b8d14fd0db13e8e22a95961d SRA:SRR5112419 https://www.encodeproject.org/files/ENCFF979GWR/@@download/ENCFF979GWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF216GDM bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF615YUR, ENCFF807MUK, ENCFF841SOA 4543461209 ENCODE Processing Pipeline 87e66b0522b02395503d8f546627a011 https://www.encodeproject.org/files/ENCFF216GDM/@@download/ENCFF216GDM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF853POP bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF558UNF, ENCFF807MUK, ENCFF979GWR 5209154298 ENCODE Processing Pipeline 303be7b43c80c346bce11325ff858cee https://www.encodeproject.org/files/ENCFF853POP/@@download/ENCFF853POP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF134GKQ bigWig signal p-value ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF583FAG, ENCFF853POP 1274436335 ENCODE Processing Pipeline afa413847c21937d46ad9ffce275577d https://www.encodeproject.org/files/ENCFF134GKQ/@@download/ENCFF134GKQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF134UHE bigWig fold change over control ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF583FAG, ENCFF853POP 1209787973 ENCODE Processing Pipeline 2824fbd6a4e1ec85f6ea314917dd7f07 https://www.encodeproject.org/files/ENCFF134UHE/@@download/ENCFF134UHE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF133VVN bam unfiltered alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF615YUR, ENCFF643CGH, ENCFF841SOA 5697299390 ENCODE Processing Pipeline cf904d7882dd0b4110f1ab6e0c475560 https://www.encodeproject.org/files/ENCFF133VVN/@@download/ENCFF133VVN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF440WSC bam unfiltered alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF558UNF, ENCFF643CGH, ENCFF979GWR 6052923729 ENCODE Processing Pipeline bc144821a0e1a4669ee1301f89282a35 https://www.encodeproject.org/files/ENCFF440WSC/@@download/ENCFF440WSC.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF628FHG bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF615YUR, ENCFF643CGH, ENCFF841SOA 4548235221 ENCODE Processing Pipeline 05324328311f803da8b17f100d996baa https://www.encodeproject.org/files/ENCFF628FHG/@@download/ENCFF628FHG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF096WSH bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF558UNF, ENCFF643CGH, ENCFF979GWR 5214328322 ENCODE Processing Pipeline 3f569c8da80efe53a843c75870e4f9df https://www.encodeproject.org/files/ENCFF096WSH/@@download/ENCFF096WSH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF347FMB bigWig signal p-value ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF628FHG 1085715609 ENCODE Processing Pipeline 3520a241f312251eb95fa7a748e1c86a https://www.encodeproject.org/files/ENCFF347FMB/@@download/ENCFF347FMB.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF652KVN bigWig signal p-value ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF096WSH, ENCFF426RDP 962600554 ENCODE Processing Pipeline f1bb44ec0624ee1b38dc5c88188b986a https://www.encodeproject.org/files/ENCFF652KVN/@@download/ENCFF652KVN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF758OPP bigWig signal p-value ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF096WSH, ENCFF291AFY, ENCFF426RDP, ENCFF628FHG 2125092009 ENCODE Processing Pipeline 51f059a7ddf24f0138bb1c4f7a8c3469 https://www.encodeproject.org/files/ENCFF758OPP/@@download/ENCFF758OPP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF347EAH bigWig fold change over control ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF628FHG 1197809131 ENCODE Processing Pipeline edf99fb5e464b84ac4c25adc4118bf77 https://www.encodeproject.org/files/ENCFF347EAH/@@download/ENCFF347EAH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF483HLJ bigWig fold change over control ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF096WSH, ENCFF426RDP 1217854630 ENCODE Processing Pipeline c4093bf8ef594191b3f64b90ad436bb7 https://www.encodeproject.org/files/ENCFF483HLJ/@@download/ENCFF483HLJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF649GIG bigWig fold change over control ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF096WSH, ENCFF291AFY, ENCFF426RDP, ENCFF628FHG 2118868223 ENCODE Processing Pipeline 72ff5933caf3941896ca4510c4452e75 https://www.encodeproject.org/files/ENCFF649GIG/@@download/ENCFF649GIG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF555YKJ bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF628FHG 6411718 ENCODE Processing Pipeline 516a1137e46b66d840e4bc80e7149874 https://www.encodeproject.org/files/ENCFF555YKJ/@@download/ENCFF555YKJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF762MQT bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF096WSH, ENCFF426RDP 6429413 ENCODE Processing Pipeline ccfc89ca2c8da1b7a2cd740039e77b9e https://www.encodeproject.org/files/ENCFF762MQT/@@download/ENCFF762MQT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF598HDI bigBed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF762MQT 11252550 ENCODE Processing Pipeline 056265d028f7333dacdfd7504366074b https://www.encodeproject.org/files/ENCFF598HDI/@@download/ENCFF598HDI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF826DON bigBed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF555YKJ 11260942 ENCODE Processing Pipeline 624065f9462c9c52cc3cd7ac217698d0 https://www.encodeproject.org/files/ENCFF826DON/@@download/ENCFF826DON.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF022FYX bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF096WSH, ENCFF291AFY, ENCFF426RDP, ENCFF628FHG 7193763 ENCODE Processing Pipeline cf223803cba234dd8c62a4beb5cc2f40 https://www.encodeproject.org/files/ENCFF022FYX/@@download/ENCFF022FYX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF703AJA bigBed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF022FYX 13421180 ENCODE Processing Pipeline 170f7757bb3abdd9b0202cc42f69e46b https://www.encodeproject.org/files/ENCFF703AJA/@@download/ENCFF703AJA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF762CDY bed narrowPeak optimal idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF022FYX, ENCFF419RSJ, ENCFF555YKJ, ENCFF762MQT 302966 ENCODE Processing Pipeline f0842fe5351da85dd565483651160724 https://www.encodeproject.org/files/ENCFF762CDY/@@download/ENCFF762CDY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF691JGW bigBed narrowPeak conservative idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF869EBE 385075 ENCODE Processing Pipeline 3622abc150514d93e7febe110b43df28 https://www.encodeproject.org/files/ENCFF691JGW/@@download/ENCFF691JGW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF862IKG bigBed narrowPeak optimal idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF762CDY 580353 ENCODE Processing Pipeline 5c9e1808d2fdb22fb985772934c649ca https://www.encodeproject.org/files/ENCFF862IKG/@@download/ENCFF862IKG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF869EBE bed narrowPeak conservative idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF022FYX, ENCFF419RSJ, ENCFF555YKJ, ENCFF762MQT 172613 ENCODE Processing Pipeline 48d58328b8a933a33ae705222070c300 https://www.encodeproject.org/files/ENCFF869EBE/@@download/ENCFF869EBE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF530DCS bigWig signal p-value ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF216GDM 1005943597 ENCODE Processing Pipeline be11e230a5dbf70359ce81414c20e7c0 https://www.encodeproject.org/files/ENCFF530DCS/@@download/ENCFF530DCS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF907XIB bigWig fold change over control ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF049MPQ, ENCFF216GDM, ENCFF583FAG, ENCFF853POP 2136315343 ENCODE Processing Pipeline 45507557b0528768b4f303526e44c299 https://www.encodeproject.org/files/ENCFF907XIB/@@download/ENCFF907XIB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF015QGX bigWig fold change over control ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF216GDM 1132419415 ENCODE Processing Pipeline 3dbb477f3a3069b7c4af6f5ed88bcaf9 https://www.encodeproject.org/files/ENCFF015QGX/@@download/ENCFF015QGX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF570FQN bigWig signal p-value ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF049MPQ, ENCFF216GDM, ENCFF583FAG, ENCFF853POP 1812881058 ENCODE Processing Pipeline 1393e317c1f51de0bdfc3b40898a1ab1 https://www.encodeproject.org/files/ENCFF570FQN/@@download/ENCFF570FQN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF508BAI bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF216GDM 6401918 ENCODE Processing Pipeline e857a61d9d61776699bf2b20d368911d https://www.encodeproject.org/files/ENCFF508BAI/@@download/ENCFF508BAI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF876DVV bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF049MPQ, ENCFF216GDM, ENCFF583FAG, ENCFF853POP 7207908 ENCODE Processing Pipeline a13773d6a339fe233e3aeb17e1300f2f https://www.encodeproject.org/files/ENCFF876DVV/@@download/ENCFF876DVV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF401OWU bigBed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF508BAI 11237574 ENCODE Processing Pipeline b219b0a7dff2af0653b43e2fd29b6013 https://www.encodeproject.org/files/ENCFF401OWU/@@download/ENCFF401OWU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF449UFI bed narrowPeak conservative idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF001TDO, ENCFF411WAC, ENCFF508BAI, ENCFF876DVV 179646 ENCODE Processing Pipeline 50099e287e257fbe934d13b8ded9d97f https://www.encodeproject.org/files/ENCFF449UFI/@@download/ENCFF449UFI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF411WAC bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF583FAG, ENCFF853POP 6422864 ENCODE Processing Pipeline 5cba1992642250f9e5ec1241b6b01413 https://www.encodeproject.org/files/ENCFF411WAC/@@download/ENCFF411WAC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF818GGG bigBed narrowPeak optimal idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF572YVL 585020 ENCODE Processing Pipeline f2608e79e8af7979117b94ef3e410ee7 https://www.encodeproject.org/files/ENCFF818GGG/@@download/ENCFF818GGG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF278MUS bigBed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF876DVV 13408566 ENCODE Processing Pipeline f2b2b8df0e54db84beb21db4dbb6d2fb https://www.encodeproject.org/files/ENCFF278MUS/@@download/ENCFF278MUS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF445IZI bigBed narrowPeak conservative idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF449UFI 391037 ENCODE Processing Pipeline 9917681fc636f73c2e8e46c28bbb60f2 https://www.encodeproject.org/files/ENCFF445IZI/@@download/ENCFF445IZI.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF572YVL bed narrowPeak optimal idr thresholded peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2, 3 ENCFF001TDO, ENCFF411WAC, ENCFF508BAI, ENCFF876DVV 310550 ENCODE Processing Pipeline f198a4bd13b4f6eea757257bd24eb6e7 https://www.encodeproject.org/files/ENCFF572YVL/@@download/ENCFF572YVL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF232UCE bigBed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 ENCFF411WAC 11234161 ENCODE Processing Pipeline 60c0d90dbbf2a6e21ca16363b4d8c07c https://www.encodeproject.org/files/ENCFF232UCE/@@download/ENCFF232UCE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF299RKG fastq reads ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF054XLD 2405914037 Michael Snyder, Stanford 865f60f21e9c31cb41fa1d7cbd5a892b https://www.encodeproject.org/files/ENCFF299RKG/@@download/ENCFF299RKG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF054XLD fastq reads ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF299RKG 2440215696 Michael Snyder, Stanford 0fcaa6abf88bd8f53fe2b096388cc5ca https://www.encodeproject.org/files/ENCFF054XLD/@@download/ENCFF054XLD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF297FTI bam unfiltered alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF054XLD, ENCFF299RKG, ENCFF807MUK 5312254028 ENCODE Processing Pipeline 7b024ae267e2e4627e83b99692b7b6ef https://www.encodeproject.org/files/ENCFF297FTI/@@download/ENCFF297FTI.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF647QOF bam unfiltered alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF054XLD, ENCFF299RKG, ENCFF643CGH 5314935266 ENCODE Processing Pipeline 1884c2f96de9f6acc91f1db0fe7e2107 https://www.encodeproject.org/files/ENCFF647QOF/@@download/ENCFF647QOF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF721HXJ bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF054XLD, ENCFF299RKG, ENCFF807MUK 4284688711 ENCODE Processing Pipeline e96e8bcee79814ffb630107756c3cc75 https://www.encodeproject.org/files/ENCFF721HXJ/@@download/ENCFF721HXJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF997DGT bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF054XLD, ENCFF299RKG, ENCFF643CGH 4285024514 ENCODE Processing Pipeline bdd2c86763eeb46d415e35d4c7c90ab7 https://www.encodeproject.org/files/ENCFF997DGT/@@download/ENCFF997DGT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF699YFH bigWig fold change over control ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF721HXJ 1370248689 ENCODE Processing Pipeline 67a12d0e6bf595cc1d2a6adca7024c8a https://www.encodeproject.org/files/ENCFF699YFH/@@download/ENCFF699YFH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF538XLB bigWig signal p-value ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF721HXJ 1181322230 ENCODE Processing Pipeline e078cef1c4f61fa1d2f062f5ddca34f3 https://www.encodeproject.org/files/ENCFF538XLB/@@download/ENCFF538XLB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF168XXW bigWig signal p-value ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF997DGT 1165313185 ENCODE Processing Pipeline 590040170065b9574c6ef3f3f1f08102 https://www.encodeproject.org/files/ENCFF168XXW/@@download/ENCFF168XXW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF555VZI bigWig fold change over control ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF997DGT 1321507985 ENCODE Processing Pipeline 193bbe98391fc6fab825d7d0f661e6b1 https://www.encodeproject.org/files/ENCFF555VZI/@@download/ENCFF555VZI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF858YDQ bigBed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF969RHP 11331742 ENCODE Processing Pipeline 7d9162597c4dbf7bdec6ad5dd096189b https://www.encodeproject.org/files/ENCFF858YDQ/@@download/ENCFF858YDQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF616KKI bigBed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF793ZFN 11343465 ENCODE Processing Pipeline eb8159f4b031dd9fffd31993cf1b69a5 https://www.encodeproject.org/files/ENCFF616KKI/@@download/ENCFF616KKI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF680BLN fastq reads ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF056GFU 3381028855 Michael Snyder, Stanford 32e4ee09e7fa658d5dae2b7a9114ee7b https://www.encodeproject.org/files/ENCFF680BLN/@@download/ENCFF680BLN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF056GFU fastq reads ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF680BLN 3836011884 Michael Snyder, Stanford 6b5cce9e15c03a05785e38861fe57cf7 https://www.encodeproject.org/files/ENCFF056GFU/@@download/ENCFF056GFU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF900JTW bam unfiltered alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF056GFU, ENCFF680BLN, ENCFF807MUK 7254407983 ENCODE Processing Pipeline 155f07fd2b3a30940c783a3f2db43bef https://www.encodeproject.org/files/ENCFF900JTW/@@download/ENCFF900JTW.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF076LCN bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF056GFU, ENCFF680BLN, ENCFF807MUK 6162414857 ENCODE Processing Pipeline 37b24a076fd7db0d336b838fed96bdce https://www.encodeproject.org/files/ENCFF076LCN/@@download/ENCFF076LCN.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF662OJX bam unfiltered alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF056GFU, ENCFF643CGH, ENCFF680BLN 7264286191 ENCODE Processing Pipeline 243726f21e2037720e9399c1023b0fe6 https://www.encodeproject.org/files/ENCFF662OJX/@@download/ENCFF662OJX.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF156ATQ bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF056GFU, ENCFF643CGH, ENCFF680BLN 6161935947 ENCODE Processing Pipeline 87a5b8c96209f41a221acb79a1919b75 https://www.encodeproject.org/files/ENCFF156ATQ/@@download/ENCFF156ATQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF367BJY bigWig signal p-value ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF156ATQ 1315910256 ENCODE Processing Pipeline ddcc4ebaa651b7406ee309ca309c1d18 https://www.encodeproject.org/files/ENCFF367BJY/@@download/ENCFF367BJY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF629JQR bigWig signal p-value ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF076LCN 1245795301 ENCODE Processing Pipeline 446fcc75e6471f017fc6587eaf2c81db https://www.encodeproject.org/files/ENCFF629JQR/@@download/ENCFF629JQR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF452NIW bigWig signal p-value ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF076LCN, ENCFF721HXJ 1975452433 ENCODE Processing Pipeline 05931112746b0428178dee39a5accd2c https://www.encodeproject.org/files/ENCFF452NIW/@@download/ENCFF452NIW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF725XID bigWig signal p-value ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF156ATQ, ENCFF997DGT 2010832484 ENCODE Processing Pipeline 8fca33ccac2214f2a5f07e3b1c1798c6 https://www.encodeproject.org/files/ENCFF725XID/@@download/ENCFF725XID.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF216PMI bigWig fold change over control ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF156ATQ 1515305948 ENCODE Processing Pipeline b8d0b117fcca7bc062db3c103ec09c7e https://www.encodeproject.org/files/ENCFF216PMI/@@download/ENCFF216PMI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF613QWC bigWig fold change over control ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF076LCN 1486841013 ENCODE Processing Pipeline ac136a284896dc5a959235317654ca73 https://www.encodeproject.org/files/ENCFF613QWC/@@download/ENCFF613QWC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF297YWB bigWig fold change over control ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF076LCN, ENCFF721HXJ 2029509047 ENCODE Processing Pipeline eb32c05169de10830cddd63b8cdfecce https://www.encodeproject.org/files/ENCFF297YWB/@@download/ENCFF297YWB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF568ZUR bigWig fold change over control ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF156ATQ, ENCFF997DGT 2067114322 ENCODE Processing Pipeline 41393c1b0389cd224ebbe40b8ce1f5b0 https://www.encodeproject.org/files/ENCFF568ZUR/@@download/ENCFF568ZUR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF481EZB bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF156ATQ, ENCFF997DGT 7040694 ENCODE Processing Pipeline a1eba21d2391547ad5c131c78d92038c https://www.encodeproject.org/files/ENCFF481EZB/@@download/ENCFF481EZB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF422YAW bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF076LCN 6105914 ENCODE Processing Pipeline c3618d87840ada5f29980f9e9f2a59f6 https://www.encodeproject.org/files/ENCFF422YAW/@@download/ENCFF422YAW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF969RHP bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF721HXJ 6335609 ENCODE Processing Pipeline b7ee7de9798a1c3c33425886c92f317f https://www.encodeproject.org/files/ENCFF969RHP/@@download/ENCFF969RHP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF793ZFN bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF997DGT 6327774 ENCODE Processing Pipeline 45d5535380ec28f116cd432d43e7f9d5 https://www.encodeproject.org/files/ENCFF793ZFN/@@download/ENCFF793ZFN.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF387UVL bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF156ATQ 6102623 ENCODE Processing Pipeline f420624e419b0862721a3016fd00e588 https://www.encodeproject.org/files/ENCFF387UVL/@@download/ENCFF387UVL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF947QYH bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF076LCN, ENCFF721HXJ 7093795 ENCODE Processing Pipeline 00e0987f72450cae744cde4571c00fa5 https://www.encodeproject.org/files/ENCFF947QYH/@@download/ENCFF947QYH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF029GSN bigBed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF387UVL 11397469 ENCODE Processing Pipeline 2a4cd0320c135e3bd67e054327c43462 https://www.encodeproject.org/files/ENCFF029GSN/@@download/ENCFF029GSN.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF260BFM bigBed narrowPeak conservative idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF110HTE 70070 ENCODE Processing Pipeline 9ef913a558febabe5f6e3f65e45fcc5f https://www.encodeproject.org/files/ENCFF260BFM/@@download/ENCFF260BFM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF650HEE bed narrowPeak conservative idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF422YAW, ENCFF947QYH, ENCFF969RHP 10428 ENCODE Processing Pipeline 23448b6bce550c2a9d9674d416451ef2 https://www.encodeproject.org/files/ENCFF650HEE/@@download/ENCFF650HEE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF867MPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF446PZF 111330 ENCODE Processing Pipeline e19a950ac1034c5191d1b7889a5fae04 https://www.encodeproject.org/files/ENCFF867MPJ/@@download/ENCFF867MPJ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF110HTE bed narrowPeak conservative idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF387UVL, ENCFF419RSJ, ENCFF481EZB, ENCFF793ZFN 10768 ENCODE Processing Pipeline 03ab71500388a12b6f8720adeabe4821 https://www.encodeproject.org/files/ENCFF110HTE/@@download/ENCFF110HTE.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF219VBE bed narrowPeak optimal idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF387UVL, ENCFF419RSJ, ENCFF481EZB, ENCFF793ZFN 41762 ENCODE Processing Pipeline 5c3c0ceafa7bb3eda21d4e95bde2ff53 https://www.encodeproject.org/files/ENCFF219VBE/@@download/ENCFF219VBE.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF639BBN bigBed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF481EZB 11263555 ENCODE Processing Pipeline 73cc3383858441cf462775882b53ccfd https://www.encodeproject.org/files/ENCFF639BBN/@@download/ENCFF639BBN.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF639RKC bigBed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF947QYH 11241092 ENCODE Processing Pipeline 1c69f6e6d83cd8ee42ba43808faf0dc0 https://www.encodeproject.org/files/ENCFF639RKC/@@download/ENCFF639RKC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF894FCQ bigBed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF422YAW 11384517 ENCODE Processing Pipeline eae9ef2970e7bca3f71e7620879d45a8 https://www.encodeproject.org/files/ENCFF894FCQ/@@download/ENCFF894FCQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF970AXD bigBed narrowPeak optimal idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF219VBE 120474 ENCODE Processing Pipeline 000513847bd09e175411a9db579bb12d https://www.encodeproject.org/files/ENCFF970AXD/@@download/ENCFF970AXD.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF828KKS bigBed narrowPeak conservative idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF650HEE 68975 ENCODE Processing Pipeline 0a8438c4a0efe12c426650a4f5d43172 https://www.encodeproject.org/files/ENCFF828KKS/@@download/ENCFF828KKS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF446PZF bed narrowPeak optimal idr thresholded peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF422YAW, ENCFF947QYH, ENCFF969RHP 36059 ENCODE Processing Pipeline 7b332b58c9ed3dce6dc77d7dcb51fafb https://www.encodeproject.org/files/ENCFF446PZF/@@download/ENCFF446PZF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF280GIQ fastq reads ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 1 101 paired-ended 1 ENCFF384HTL 2623243151 Michael Snyder, Stanford f09ffea879eeec478ac99261e6be6777 SRA:SRR6213145 https://www.encodeproject.org/files/ENCFF280GIQ/@@download/ENCFF280GIQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF950RDX fastq reads ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 1 101 paired-ended 1 ENCFF864RUH 2486842049 Michael Snyder, Stanford 8842a1cf4f4084f54c86dac4c285c54a SRA:SRR6213144 https://www.encodeproject.org/files/ENCFF950RDX/@@download/ENCFF950RDX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF384HTL fastq reads ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 1 101 paired-ended 2 ENCFF280GIQ 2696555625 Michael Snyder, Stanford e7dcc477e35ac108d45fd3c010abf48d SRA:SRR6213145 https://www.encodeproject.org/files/ENCFF384HTL/@@download/ENCFF384HTL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF864RUH fastq reads ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 1 101 paired-ended 2 ENCFF950RDX 2547402669 Michael Snyder, Stanford b56e897fdb9b5850effe63f4f00cf365 SRA:SRR6213144 https://www.encodeproject.org/files/ENCFF864RUH/@@download/ENCFF864RUH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF828KIU bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 101 ENCFF807MUK, ENCFF864RUH, ENCFF950RDX 4769824839 ENCODE Processing Pipeline d8b2a34852d26f0d5cbed249bd80ed32 https://www.encodeproject.org/files/ENCFF828KIU/@@download/ENCFF828KIU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF950OBC bam unfiltered alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 101 ENCFF280GIQ, ENCFF384HTL, ENCFF807MUK 5818107403 ENCODE Processing Pipeline a6efce38f44588110765e97a73a117f9 https://www.encodeproject.org/files/ENCFF950OBC/@@download/ENCFF950OBC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF803MSF bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 101 ENCFF280GIQ, ENCFF384HTL, ENCFF807MUK 5012740896 ENCODE Processing Pipeline 7f2a0e1bb449f2b4f5e13475a946953e https://www.encodeproject.org/files/ENCFF803MSF/@@download/ENCFF803MSF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF307PBV bam unfiltered alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 101 ENCFF280GIQ, ENCFF384HTL, ENCFF643CGH 5824933994 ENCODE Processing Pipeline 5e08a6f55eaef72e2827fd930b8970e3 https://www.encodeproject.org/files/ENCFF307PBV/@@download/ENCFF307PBV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF842UYO bam unfiltered alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 101 ENCFF807MUK, ENCFF864RUH, ENCFF950RDX 5537138053 ENCODE Processing Pipeline d161c04d358f0ac591e209f5cab0e198 https://www.encodeproject.org/files/ENCFF842UYO/@@download/ENCFF842UYO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF339YFE bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 101 ENCFF643CGH, ENCFF864RUH, ENCFF950RDX 4773296352 ENCODE Processing Pipeline af78140f7cb2c6218f3d0bc06d109044 https://www.encodeproject.org/files/ENCFF339YFE/@@download/ENCFF339YFE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF783YWQ bam unfiltered alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 101 ENCFF643CGH, ENCFF864RUH, ENCFF950RDX 5543915259 ENCODE Processing Pipeline ccc1357c347b1c8931fc5f33d37d4aa5 https://www.encodeproject.org/files/ENCFF783YWQ/@@download/ENCFF783YWQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF191BKS bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 101 ENCFF280GIQ, ENCFF384HTL, ENCFF643CGH 5016259543 ENCODE Processing Pipeline 13d15f48aa193bfc5984c75e085c725d https://www.encodeproject.org/files/ENCFF191BKS/@@download/ENCFF191BKS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF190JUH bigWig fold change over control ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF803MSF, ENCFF828KIU 2059066044 ENCODE Processing Pipeline b8c16226a2025011ccf2962682281384 https://www.encodeproject.org/files/ENCFF190JUH/@@download/ENCFF190JUH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF216ILQ bigBed narrowPeak optimal idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF313DUS 652716 ENCODE Processing Pipeline 68b2663b4cbeaa4f45b735a6cf93aacc https://www.encodeproject.org/files/ENCFF216ILQ/@@download/ENCFF216ILQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF538ZVT bigWig signal p-value ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF803MSF 1279605338 ENCODE Processing Pipeline 6ad23e6140db62b48fee609ee4a7c1d1 https://www.encodeproject.org/files/ENCFF538ZVT/@@download/ENCFF538ZVT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF423BWX bigWig signal p-value ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF191BKS 1481067523 ENCODE Processing Pipeline 4ce1160bd6532462c25d15b8680879c1 https://www.encodeproject.org/files/ENCFF423BWX/@@download/ENCFF423BWX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF081URJ bigWig signal p-value ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF828KIU 1516316527 ENCODE Processing Pipeline 6c658571e2820b2ea355adb81980d724 https://www.encodeproject.org/files/ENCFF081URJ/@@download/ENCFF081URJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF877GIT bigWig signal p-value ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF339YFE 1233078409 ENCODE Processing Pipeline 48f53d8cd8482ab5327bfe8a65b732d8 https://www.encodeproject.org/files/ENCFF877GIT/@@download/ENCFF877GIT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF901QEG bigWig fold change over control ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF191BKS 1512658307 ENCODE Processing Pipeline 81879a97e2f933a93adeec365d7cb8fd https://www.encodeproject.org/files/ENCFF901QEG/@@download/ENCFF901QEG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF733LHT bigBed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF435TXR 13384760 ENCODE Processing Pipeline 75faa71f5969f6f338eed0a3577e7963 https://www.encodeproject.org/files/ENCFF733LHT/@@download/ENCFF733LHT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF267WQW bed narrowPeak conservative idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF217DOH, ENCFF419RSJ, ENCFF426IIZ, ENCFF733SFE 306885 ENCODE Processing Pipeline 79bb44eb171656d0c451f572d99fad90 https://www.encodeproject.org/files/ENCFF267WQW/@@download/ENCFF267WQW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF416GRM bed narrowPeak optimal idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF001TDO, ENCFF062EXE, ENCFF435TXR, ENCFF656FNF 362721 ENCODE Processing Pipeline f8a0b1d27769a812d6291c4e962dc061 https://www.encodeproject.org/files/ENCFF416GRM/@@download/ENCFF416GRM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF324GWA bigWig fold change over control ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF339YFE 1476739774 ENCODE Processing Pipeline 28081e8c4f816f3d5f956d4821840196 https://www.encodeproject.org/files/ENCFF324GWA/@@download/ENCFF324GWA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF807TFA bigWig fold change over control ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF191BKS, ENCFF339YFE 2067151694 ENCODE Processing Pipeline 22afd0bc1e1dc8e27e740c3116506a53 https://www.encodeproject.org/files/ENCFF807TFA/@@download/ENCFF807TFA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF733SFE bed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF339YFE 6904572 ENCODE Processing Pipeline c451082d5b2854b1ec0fe2d806e88458 https://www.encodeproject.org/files/ENCFF733SFE/@@download/ENCFF733SFE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF694COE bigBed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF426IIZ 13390625 ENCODE Processing Pipeline fa81ae1fd18b5fdf3bf991fe55a1ca4c https://www.encodeproject.org/files/ENCFF694COE/@@download/ENCFF694COE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF656FNF bed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF803MSF, ENCFF828KIU 7193729 ENCODE Processing Pipeline c906bb8121aaaf24ada2870d5c950a9a https://www.encodeproject.org/files/ENCFF656FNF/@@download/ENCFF656FNF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF605VJJ bigBed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF656FNF 13211586 ENCODE Processing Pipeline d0994e70f408b70913f6075c8a66c023 https://www.encodeproject.org/files/ENCFF605VJJ/@@download/ENCFF605VJJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF507WWO bigWig signal p-value ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF803MSF, ENCFF828KIU 1998432042 ENCODE Processing Pipeline 8a68c7bb522b4cb28935ec82c2ece0f0 https://www.encodeproject.org/files/ENCFF507WWO/@@download/ENCFF507WWO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF852PER bigWig fold change over control ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF828KIU 1472767321 ENCODE Processing Pipeline 7be19f572748b5a5036ca03f64e85a71 https://www.encodeproject.org/files/ENCFF852PER/@@download/ENCFF852PER.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF915TDC bigBed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF062EXE 13376420 ENCODE Processing Pipeline d89a89b5cbbed7236b5550924ab2958a https://www.encodeproject.org/files/ENCFF915TDC/@@download/ENCFF915TDC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF313DUS bed narrowPeak optimal idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF217DOH, ENCFF419RSJ, ENCFF426IIZ, ENCFF733SFE 361630 ENCODE Processing Pipeline d53ac2a8b2006a28aa24b3bf588e0c0c https://www.encodeproject.org/files/ENCFF313DUS/@@download/ENCFF313DUS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF809UIM bed narrowPeak conservative idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF001TDO, ENCFF062EXE, ENCFF435TXR, ENCFF656FNF 315320 ENCODE Processing Pipeline e4e598219b99bc1c1767a4aea529744c https://www.encodeproject.org/files/ENCFF809UIM/@@download/ENCFF809UIM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF901RTH bigWig signal p-value ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF191BKS, ENCFF339YFE 2006650842 ENCODE Processing Pipeline f15cbf0d613920279615b283b1e047bd https://www.encodeproject.org/files/ENCFF901RTH/@@download/ENCFF901RTH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF435TXR bed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF828KIU 6915155 ENCODE Processing Pipeline b649e28ccb528e5fd82a64604ab3c630 https://www.encodeproject.org/files/ENCFF435TXR/@@download/ENCFF435TXR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF904HWF bigBed narrowPeak conservative idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF809UIM 587006 ENCODE Processing Pipeline 7a7d9bd287892335514efed35d375fd5 https://www.encodeproject.org/files/ENCFF904HWF/@@download/ENCFF904HWF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF877AHV bigWig fold change over control ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF803MSF 1517516889 ENCODE Processing Pipeline 3511e3576af82b23bc5758a2db14f594 https://www.encodeproject.org/files/ENCFF877AHV/@@download/ENCFF877AHV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF426IIZ bed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF191BKS 6893090 ENCODE Processing Pipeline 0dda0398d4de4df4f40185ea0bee293b https://www.encodeproject.org/files/ENCFF426IIZ/@@download/ENCFF426IIZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF062EXE bed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 ENCFF803MSF 6891500 ENCODE Processing Pipeline 3b367cf758fb3b8321c46b55e1290543 https://www.encodeproject.org/files/ENCFF062EXE/@@download/ENCFF062EXE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF217DOH bed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF191BKS, ENCFF339YFE 7186840 ENCODE Processing Pipeline 33ac36c292e4f0dca9c57b86710350ad https://www.encodeproject.org/files/ENCFF217DOH/@@download/ENCFF217DOH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF877HHP bigBed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 ENCFF733SFE 13387371 ENCODE Processing Pipeline 216569d30a9291c82f57fa4e275c88dc https://www.encodeproject.org/files/ENCFF877HHP/@@download/ENCFF877HHP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF518GNF bigBed narrowPeak peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF217DOH 13206545 ENCODE Processing Pipeline 14c3419e81bb5b47abd59c58cd3ed149 https://www.encodeproject.org/files/ENCFF518GNF/@@download/ENCFF518GNF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF609LZD bigBed narrowPeak conservative idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF267WQW 576305 ENCODE Processing Pipeline 4f6f211b390b63f4ce288fffd1274140 https://www.encodeproject.org/files/ENCFF609LZD/@@download/ENCFF609LZD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF139SAR bigBed narrowPeak optimal idr thresholded peaks ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4, 5 ENCFF416GRM 800397 ENCODE Processing Pipeline 5af738664e0834b64bcfe05cab5ddd1f https://www.encodeproject.org/files/ENCFF139SAR/@@download/ENCFF139SAR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF218PFQ fastq reads ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF349BCP 2274153055 Michael Snyder, Stanford 5b888c9fddd71066f84b0d8056019a0e SRA:SRR5111266 https://www.encodeproject.org/files/ENCFF218PFQ/@@download/ENCFF218PFQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF385QYN fastq reads ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF738AWV 1105584531 Michael Snyder, Stanford 4183e4b4fea427427666e19afd941e85 SRA:SRR5111267 https://www.encodeproject.org/files/ENCFF385QYN/@@download/ENCFF385QYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF738AWV fastq reads ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF385QYN 1101874372 Michael Snyder, Stanford 4b699067cc1f319e5842c3b07aac115d SRA:SRR5111267 https://www.encodeproject.org/files/ENCFF738AWV/@@download/ENCFF738AWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF349BCP fastq reads ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF218PFQ 2329395244 Michael Snyder, Stanford fc862c85c6c92c8061383c6d5c5bae2b SRA:SRR5111266 https://www.encodeproject.org/files/ENCFF349BCP/@@download/ENCFF349BCP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF791HFU bam unfiltered alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF385QYN, ENCFF738AWV, ENCFF807MUK 2586551829 ENCODE Processing Pipeline 45bbdf47853e76dff93f822e67eeb650 https://www.encodeproject.org/files/ENCFF791HFU/@@download/ENCFF791HFU.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF867QNE bam unfiltered alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF385QYN, ENCFF643CGH, ENCFF738AWV 2590270677 ENCODE Processing Pipeline 0f00c45add86926b305c0d53e797c67b https://www.encodeproject.org/files/ENCFF867QNE/@@download/ENCFF867QNE.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF482XAO bam unfiltered alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF218PFQ, ENCFF349BCP, ENCFF807MUK 5086644086 ENCODE Processing Pipeline aac65b5b3f35441c5cb1ec0a66e86732 https://www.encodeproject.org/files/ENCFF482XAO/@@download/ENCFF482XAO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF476JLN bam unfiltered alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF218PFQ, ENCFF349BCP, ENCFF643CGH 5092968117 ENCODE Processing Pipeline 60442a5752452ee0992371615eb4fd8f https://www.encodeproject.org/files/ENCFF476JLN/@@download/ENCFF476JLN.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF460MGY bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF385QYN, ENCFF738AWV, ENCFF807MUK 2287880654 ENCODE Processing Pipeline 65b95ead5d4d67c1cea72c0fb5d706aa https://www.encodeproject.org/files/ENCFF460MGY/@@download/ENCFF460MGY.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF652BBO bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF385QYN, ENCFF643CGH, ENCFF738AWV 2289712331 ENCODE Processing Pipeline 8a91759388016fd4f4ebe1b831612af5 https://www.encodeproject.org/files/ENCFF652BBO/@@download/ENCFF652BBO.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF382ACR bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF218PFQ, ENCFF349BCP, ENCFF807MUK 4474342297 ENCODE Processing Pipeline aa26b01fceb392c7e3aecc66abf82424 https://www.encodeproject.org/files/ENCFF382ACR/@@download/ENCFF382ACR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF395PJR bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF218PFQ, ENCFF349BCP, ENCFF643CGH 4476585885 ENCODE Processing Pipeline fb2d52c792ca7baa1b30350a05df1273 https://www.encodeproject.org/files/ENCFF395PJR/@@download/ENCFF395PJR.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF238HQE bigWig signal p-value ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF382ACR 1269145211 ENCODE Processing Pipeline e090ebd5ee817602558d88ca9d387c7b https://www.encodeproject.org/files/ENCFF238HQE/@@download/ENCFF238HQE.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF969JWA bigWig signal p-value ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF460MGY 1163462214 ENCODE Processing Pipeline 12c8174471487865a185d9b794533ed5 https://www.encodeproject.org/files/ENCFF969JWA/@@download/ENCFF969JWA.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF887LNY bigWig signal p-value ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF382ACR, ENCFF460MGY 1504311437 ENCODE Processing Pipeline 61cf0c8f22c7568778af62a32270d1ec https://www.encodeproject.org/files/ENCFF887LNY/@@download/ENCFF887LNY.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF963UUC bigWig fold change over control ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF382ACR 1421685545 ENCODE Processing Pipeline f504162e822022e9f3fe7868ff1d353e https://www.encodeproject.org/files/ENCFF963UUC/@@download/ENCFF963UUC.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF313UBK bigWig fold change over control ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF460MGY 977979544 ENCODE Processing Pipeline f2c204711ab26b2af33088cda3ddb8c3 https://www.encodeproject.org/files/ENCFF313UBK/@@download/ENCFF313UBK.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF925RLT bigWig fold change over control ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF382ACR, ENCFF460MGY 1798036555 ENCODE Processing Pipeline eec86c25397155b24e46cf01c4926796 https://www.encodeproject.org/files/ENCFF925RLT/@@download/ENCFF925RLT.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF656GQP bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF382ACR 7027379 ENCODE Processing Pipeline e90c0e2eba8a012518515ca293a501f9 https://www.encodeproject.org/files/ENCFF656GQP/@@download/ENCFF656GQP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF218HTW bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF460MGY 6112214 ENCODE Processing Pipeline 4a9a23aade8c144bdb62fb8f80f577b3 https://www.encodeproject.org/files/ENCFF218HTW/@@download/ENCFF218HTW.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF588MXL bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF382ACR, ENCFF460MGY 7160667 ENCODE Processing Pipeline 7ac377f1e6374b0a69be12cc27e5908b https://www.encodeproject.org/files/ENCFF588MXL/@@download/ENCFF588MXL.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF138AAO bigBed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF656GQP 13244584 ENCODE Processing Pipeline e9b2cda3cff942ff57230ae8150b3258 https://www.encodeproject.org/files/ENCFF138AAO/@@download/ENCFF138AAO.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF872YKA bigBed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF218HTW 11312937 ENCODE Processing Pipeline fbc86fd66c2ed55a3370306c4c79b00e https://www.encodeproject.org/files/ENCFF872YKA/@@download/ENCFF872YKA.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF542ZBR bigBed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF588MXL 13155525 ENCODE Processing Pipeline 9d3ea6c725d8b946d3c060d3bbb2fc4c https://www.encodeproject.org/files/ENCFF542ZBR/@@download/ENCFF542ZBR.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF652PRN bed narrowPeak conservative idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF218HTW, ENCFF588MXL, ENCFF656GQP 153697 ENCODE Processing Pipeline 894cd9eb3c46bc0c97463b3707a29bb8 https://www.encodeproject.org/files/ENCFF652PRN/@@download/ENCFF652PRN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF012NIN bigBed narrowPeak conservative idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF652PRN 320376 ENCODE Processing Pipeline 0f2b3a1c52b54e3c31da28fe2792bf9f https://www.encodeproject.org/files/ENCFF012NIN/@@download/ENCFF012NIN.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF187XKX bed narrowPeak optimal idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF218HTW, ENCFF588MXL, ENCFF656GQP 267269 ENCODE Processing Pipeline e7b01256b97788a567ad6b394f3604f4 https://www.encodeproject.org/files/ENCFF187XKX/@@download/ENCFF187XKX.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF429OLH bigBed narrowPeak optimal idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF187XKX 577836 ENCODE Processing Pipeline 2997b2c94d6679f6a0ae5ea371476bd0 https://www.encodeproject.org/files/ENCFF429OLH/@@download/ENCFF429OLH.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF627SRG bigWig signal p-value ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652BBO 1078879424 ENCODE Processing Pipeline c38a3017400d96cebe93bc57c2962f6a https://www.encodeproject.org/files/ENCFF627SRG/@@download/ENCFF627SRG.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF086YOL bigWig signal p-value ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF395PJR 1313773983 ENCODE Processing Pipeline 4d68654f9967ca91dbc4e58eb5aeb716 https://www.encodeproject.org/files/ENCFF086YOL/@@download/ENCFF086YOL.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF801AFI bigWig signal p-value ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF395PJR, ENCFF652BBO 1401449743 ENCODE Processing Pipeline 9885710aa2b07cbb0103fa8b4df7c8f9 https://www.encodeproject.org/files/ENCFF801AFI/@@download/ENCFF801AFI.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF086DAZ bigWig fold change over control ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF395PJR 1421716293 ENCODE Processing Pipeline 80385747690e5af090ba1ccf83c72a91 https://www.encodeproject.org/files/ENCFF086DAZ/@@download/ENCFF086DAZ.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF951UGK bigWig fold change over control ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652BBO 981852606 ENCODE Processing Pipeline ef6ef96b0052609a2a2052956d4c02c5 https://www.encodeproject.org/files/ENCFF951UGK/@@download/ENCFF951UGK.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF021OEU bigWig fold change over control ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF395PJR, ENCFF652BBO 1808116973 ENCODE Processing Pipeline a67a4b04d7f2eed254371eb35ee53855 https://www.encodeproject.org/files/ENCFF021OEU/@@download/ENCFF021OEU.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF184HVD bigBed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF866VMS 13175071 ENCODE Processing Pipeline d6244fd56fd943242e0101094891744d https://www.encodeproject.org/files/ENCFF184HVD/@@download/ENCFF184HVD.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF958QZY bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF395PJR 6944427 ENCODE Processing Pipeline fcc2462abeec67a0692c6413bab7f111 https://www.encodeproject.org/files/ENCFF958QZY/@@download/ENCFF958QZY.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF863TWT bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652BBO 5973297 ENCODE Processing Pipeline fe29897b28a2bcf749a3ca36225c322b https://www.encodeproject.org/files/ENCFF863TWT/@@download/ENCFF863TWT.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF866VMS bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF395PJR, ENCFF652BBO 7121157 ENCODE Processing Pipeline 3b6559225301c6b6e96990a8d2edb3b2 https://www.encodeproject.org/files/ENCFF866VMS/@@download/ENCFF866VMS.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF439YVL bigBed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF958QZY 13243269 ENCODE Processing Pipeline 8087adb6455796330f0166a7be708f34 https://www.encodeproject.org/files/ENCFF439YVL/@@download/ENCFF439YVL.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF416IYD bigBed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF863TWT 11309322 ENCODE Processing Pipeline 4554336f4ba66986da08423e11a95ed5 https://www.encodeproject.org/files/ENCFF416IYD/@@download/ENCFF416IYD.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF305PVK bed narrowPeak conservative idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF863TWT, ENCFF866VMS, ENCFF958QZY 152706 ENCODE Processing Pipeline 3ea857aa2425b58801a8910e5276492c https://www.encodeproject.org/files/ENCFF305PVK/@@download/ENCFF305PVK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF863FJP bigBed narrowPeak conservative idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF305PVK 319605 ENCODE Processing Pipeline 42b84d2836916b6d93581ea2c7714ff0 https://www.encodeproject.org/files/ENCFF863FJP/@@download/ENCFF863FJP.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF032CZR bed narrowPeak optimal idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF863TWT, ENCFF866VMS, ENCFF958QZY 255991 ENCODE Processing Pipeline 484305709d30521cac580a016e342e98 https://www.encodeproject.org/files/ENCFF032CZR/@@download/ENCFF032CZR.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF668ZWQ bigBed narrowPeak optimal idr thresholded peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF032CZR 560182 ENCODE Processing Pipeline 75d483e642e4b168ec70174a0e7ce184 https://www.encodeproject.org/files/ENCFF668ZWQ/@@download/ENCFF668ZWQ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF632RPD fastq reads ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF730SWR 2813431879 Michael Snyder, Stanford 13f4575532794b75eafa0fdf05fd8eb2 SRA:SRR6214331 https://www.encodeproject.org/files/ENCFF632RPD/@@download/ENCFF632RPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF730SWR fastq reads ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF632RPD 2923241805 Michael Snyder, Stanford da5ec73ace0a8f73f66c84b612f692c5 SRA:SRR6214331 https://www.encodeproject.org/files/ENCFF730SWR/@@download/ENCFF730SWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF586VYV fastq reads ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF142PPK 2926456333 Michael Snyder, Stanford 0bd64c1bf37cd9681cf6396e70ea6397 SRA:SRR6214330 https://www.encodeproject.org/files/ENCFF586VYV/@@download/ENCFF586VYV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF142PPK fastq reads ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF586VYV 3047562485 Michael Snyder, Stanford 7dd7b93470ab2bc056328d95e1a8fce2 SRA:SRR6214330 https://www.encodeproject.org/files/ENCFF142PPK/@@download/ENCFF142PPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF781YCD bam unfiltered alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF632RPD, ENCFF730SWR, ENCFF807MUK 5695302982 ENCODE Processing Pipeline a7a84f7289ed3eea9a20eddfb6c43d60 https://www.encodeproject.org/files/ENCFF781YCD/@@download/ENCFF781YCD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF983NQD bam unfiltered alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF142PPK, ENCFF586VYV, ENCFF807MUK 5922621124 ENCODE Processing Pipeline 3e710402bdccaf288d518e17c771192a https://www.encodeproject.org/files/ENCFF983NQD/@@download/ENCFF983NQD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF365PEG bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF632RPD, ENCFF730SWR, ENCFF807MUK 4227550226 ENCODE Processing Pipeline aad74602774ccee046b1ad8937e17395 https://www.encodeproject.org/files/ENCFF365PEG/@@download/ENCFF365PEG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF333RQK bam unfiltered alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF632RPD, ENCFF643CGH, ENCFF730SWR 5698107999 ENCODE Processing Pipeline e93e25441f8730281007d617b52cf953 https://www.encodeproject.org/files/ENCFF333RQK/@@download/ENCFF333RQK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF654YPD bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF142PPK, ENCFF586VYV, ENCFF807MUK 4418599436 ENCODE Processing Pipeline 55b784021f3b09867c88c93440e8a759 https://www.encodeproject.org/files/ENCFF654YPD/@@download/ENCFF654YPD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF594LSU bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF632RPD, ENCFF643CGH, ENCFF730SWR 4229466647 ENCODE Processing Pipeline e13de233cb746a5535a7a9fbd6269559 https://www.encodeproject.org/files/ENCFF594LSU/@@download/ENCFF594LSU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF812WSH bam unfiltered alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF142PPK, ENCFF586VYV, ENCFF643CGH 5925682647 ENCODE Processing Pipeline 5267a3611e903db00afd98b626e9ea24 https://www.encodeproject.org/files/ENCFF812WSH/@@download/ENCFF812WSH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF608MRT bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF142PPK, ENCFF586VYV, ENCFF643CGH 4420867787 ENCODE Processing Pipeline 3c3944acf440a3ec1a4b37bb46310a0f https://www.encodeproject.org/files/ENCFF608MRT/@@download/ENCFF608MRT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF148MUC bigWig signal p-value ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF654YPD 1248657446 ENCODE Processing Pipeline 3c9056245002ed173072398903501293 https://www.encodeproject.org/files/ENCFF148MUC/@@download/ENCFF148MUC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF708GMS bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF608MRT 6541623 ENCODE Processing Pipeline 96acb98c0517ea70c2be8706bea347a4 https://www.encodeproject.org/files/ENCFF708GMS/@@download/ENCFF708GMS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF985PRE bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF594LSU, ENCFF608MRT 7111527 ENCODE Processing Pipeline 2f174bf111329783abd540322577d086 https://www.encodeproject.org/files/ENCFF985PRE/@@download/ENCFF985PRE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF377PBM bigWig signal p-value ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF594LSU, ENCFF608MRT 1409326352 ENCODE Processing Pipeline ebbc0dbe3b9c5b4b15f191c173a1d657 https://www.encodeproject.org/files/ENCFF377PBM/@@download/ENCFF377PBM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF151VJC bigWig fold change over control ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594LSU 1319660628 ENCODE Processing Pipeline f7dd2eafb19689f38f39ce0868356290 https://www.encodeproject.org/files/ENCFF151VJC/@@download/ENCFF151VJC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF471ITM bigWig fold change over control ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF594LSU, ENCFF608MRT 1910432584 ENCODE Processing Pipeline 75d1443e1850e78b6f00139b79090279 https://www.encodeproject.org/files/ENCFF471ITM/@@download/ENCFF471ITM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF060MUZ bigBed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF985PRE 13171246 ENCODE Processing Pipeline 1ea947ee9ee947e803a1d00cde1d11df https://www.encodeproject.org/files/ENCFF060MUZ/@@download/ENCFF060MUZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF894QEV bigWig fold change over control ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF608MRT 1383037883 ENCODE Processing Pipeline ddd44a6a746ef7d5d6c6ab698693e87c https://www.encodeproject.org/files/ENCFF894QEV/@@download/ENCFF894QEV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF220CJD bigBed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF092RDZ 11231867 ENCODE Processing Pipeline f5bd726cb4cd7e698d02f819cf18cc9f https://www.encodeproject.org/files/ENCFF220CJD/@@download/ENCFF220CJD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF530VJV bigWig signal p-value ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594LSU 1453774972 ENCODE Processing Pipeline 6b9090a095cfa1ac9c1fa425fdeb6bfd https://www.encodeproject.org/files/ENCFF530VJV/@@download/ENCFF530VJV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF092RDZ bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594LSU 6590221 ENCODE Processing Pipeline 732859151afcdd73426b7566c88ab5b0 https://www.encodeproject.org/files/ENCFF092RDZ/@@download/ENCFF092RDZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF576BRL bed narrowPeak optimal idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF092RDZ, ENCFF419RSJ, ENCFF708GMS, ENCFF985PRE 77644 ENCODE Processing Pipeline 2bf27f9414425f3e751f17675b2762a9 https://www.encodeproject.org/files/ENCFF576BRL/@@download/ENCFF576BRL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF241HFO bigWig signal p-value ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF608MRT 1295676364 ENCODE Processing Pipeline cba70d9cef4a8b0adf6869d7a8ebbdc7 https://www.encodeproject.org/files/ENCFF241HFO/@@download/ENCFF241HFO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF358ESY bigBed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF708GMS 11215187 ENCODE Processing Pipeline c6e343261e8c35670363b433485d5e4b https://www.encodeproject.org/files/ENCFF358ESY/@@download/ENCFF358ESY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF819WBT bed narrowPeak conservative idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF092RDZ, ENCFF419RSJ, ENCFF708GMS, ENCFF985PRE 56067 ENCODE Processing Pipeline 0b262c97e0e3a952d2d1be2594656569 https://www.encodeproject.org/files/ENCFF819WBT/@@download/ENCFF819WBT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF863TKE bigBed narrowPeak conservative idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF819WBT 146054 ENCODE Processing Pipeline 3aedd2dd5ec1bbd634ec46d1df16f3b0 https://www.encodeproject.org/files/ENCFF863TKE/@@download/ENCFF863TKE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF052NQC bigBed narrowPeak optimal idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF576BRL 176428 ENCODE Processing Pipeline 856bd094b3c42a7b4f95688c1ee1d01f https://www.encodeproject.org/files/ENCFF052NQC/@@download/ENCFF052NQC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF953TGY bigWig signal p-value ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF365PEG 1453528361 ENCODE Processing Pipeline 61f574ff75c25322a2d8ff3ec142c293 https://www.encodeproject.org/files/ENCFF953TGY/@@download/ENCFF953TGY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF823OYP bigWig signal p-value ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF365PEG, ENCFF654YPD 1415291455 ENCODE Processing Pipeline 4ae69deed6b256f341dab96e5f0c7335 https://www.encodeproject.org/files/ENCFF823OYP/@@download/ENCFF823OYP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF342UHW bigWig fold change over control ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF365PEG 1319384118 ENCODE Processing Pipeline 1a58182388dfeac92fe141b48369df15 https://www.encodeproject.org/files/ENCFF342UHW/@@download/ENCFF342UHW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF447PFL bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF654YPD 6542671 ENCODE Processing Pipeline b9d1e0192160dc522e26b5208e8519fa https://www.encodeproject.org/files/ENCFF447PFL/@@download/ENCFF447PFL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF164NNM bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF365PEG, ENCFF654YPD 7110330 ENCODE Processing Pipeline 78325d7dfa5e76b55ca47f72a1dfcb75 https://www.encodeproject.org/files/ENCFF164NNM/@@download/ENCFF164NNM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF092QNR bigWig fold change over control ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF654YPD 1383311985 ENCODE Processing Pipeline c20d746b97179a59c52b51f310190cd2 https://www.encodeproject.org/files/ENCFF092QNR/@@download/ENCFF092QNR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF921ESK bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF365PEG 6589575 ENCODE Processing Pipeline efa5799c25d22f6d8674a049d96b8862 https://www.encodeproject.org/files/ENCFF921ESK/@@download/ENCFF921ESK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF413YVT bigWig fold change over control ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF365PEG, ENCFF654YPD 1918740247 ENCODE Processing Pipeline d012bc99cbdc5385886ecc7fd46d6b00 https://www.encodeproject.org/files/ENCFF413YVT/@@download/ENCFF413YVT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF585NNZ bigBed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF164NNM 13159454 ENCODE Processing Pipeline 7a07563e98f296fc0be8cfa08848df95 https://www.encodeproject.org/files/ENCFF585NNZ/@@download/ENCFF585NNZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF401UWO bed narrowPeak conservative idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF164NNM, ENCFF447PFL, ENCFF921ESK 52613 ENCODE Processing Pipeline c49e243e3cd996592c930b6670b9d3fb https://www.encodeproject.org/files/ENCFF401UWO/@@download/ENCFF401UWO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF225KCR bigBed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF447PFL 11200387 ENCODE Processing Pipeline 7c60ee9679c7c73ac761523cb875341a https://www.encodeproject.org/files/ENCFF225KCR/@@download/ENCFF225KCR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF121ART bigBed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF921ESK 11218380 ENCODE Processing Pipeline 84e000b7dec479f5fab80dbdaa77e712 https://www.encodeproject.org/files/ENCFF121ART/@@download/ENCFF121ART.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF348SYS bigBed narrowPeak conservative idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF401UWO 141035 ENCODE Processing Pipeline 9c7d6041fbcf01b16c323febd9fee95f https://www.encodeproject.org/files/ENCFF348SYS/@@download/ENCFF348SYS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF839UTQ bed narrowPeak optimal idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF164NNM, ENCFF447PFL, ENCFF921ESK 74697 ENCODE Processing Pipeline 3cc816bf0b74ede29cb467d912f1d58a https://www.encodeproject.org/files/ENCFF839UTQ/@@download/ENCFF839UTQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF898EGG bigBed narrowPeak optimal idr thresholded peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF839UTQ 171429 ENCODE Processing Pipeline e88c63517dab44e22659a95a4ca1ee5a https://www.encodeproject.org/files/ENCFF898EGG/@@download/ENCFF898EGG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF000XZZ bam alignments ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YAL 811272334 Michael Snyder, Stanford 121f73f564048bc655996162a60362ca https://www.encodeproject.org/files/ENCFF000XZZ/@@download/ENCFF000XZZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAB bigBed narrowPeak peaks ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLI 849836 Michael Snyder, Stanford 96fb8c8a86648b4e5a5a3d8e42f51690 https://www.encodeproject.org/files/ENCFF000YAB/@@download/ENCFF000YAB.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAC bigWig signal ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 428963674 Michael Snyder, Stanford 2dbecf080c060b5d32689a7740846aab https://www.encodeproject.org/files/ENCFF000YAC/@@download/ENCFF000YAC.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YAD bam alignments ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YAM 1214761930 Michael Snyder, Stanford 5e3a7ddf32770e7b28c4959c99e30604 https://www.encodeproject.org/files/ENCFF000YAD/@@download/ENCFF000YAD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAL fastq reads ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 635963906 Michael Snyder, Stanford c39f4d76e27f3c94eb4b92c1fcc304ce https://www.encodeproject.org/files/ENCFF000YAL/@@download/ENCFF000YAL.fastq.gz Illumina Genome Analyzer /files/ENCFF000YAU/ released biological replicates with identical biosample insufficient read length ENCFF000YAM fastq reads ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 963726330 Michael Snyder, Stanford 0f573d5b31f798f033979c3986cd4ac7 https://www.encodeproject.org/files/ENCFF000YAM/@@download/ENCFF000YAM.fastq.gz Illumina Genome Analyzer /files/ENCFF000YAZ/ released biological replicates with identical biosample insufficient read length ENCFF001VLI bed narrowPeak peaks ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 368951 Michael Snyder, Stanford ae6fe5c2163b74d8dfaea169e1a4faaf https://www.encodeproject.org/files/ENCFF001VLI/@@download/ENCFF001VLI.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CVC bed narrowPeak optimal idr thresholded peaks ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 682671 ENCODE Consortium Analysis Working Group 633e29aea0b8daae7a7633161281b118 https://www.encodeproject.org/files/ENCFF002CVC/@@download/ENCFF002CVC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF526FCV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVC 1586838 ENCODE Consortium afba1cc3202b8a69341f3d017d8a7219 https://www.encodeproject.org/files/ENCFF526FCV/@@download/ENCFF526FCV.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF342XVP fastq reads ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 1 76 single-ended 1507247171 Bradley Bernstein, Broad 7856864d06129a64cd0e233e0830a4f1 https://www.encodeproject.org/files/ENCFF342XVP/@@download/ENCFF342XVP.fastq.gz Illumina HiSeq 2500 /files/ENCFF082OUX/, /files/ENCFF158HCZ/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/ released mild to moderate bottlenecking, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF717KPM fastq reads ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 1 74 single-ended 2346379076 Bradley Bernstein, Broad 54b5ffe885e4d8de79c040eb788d0cf4 https://www.encodeproject.org/files/ENCFF717KPM/@@download/ENCFF717KPM.fastq.gz Illumina HiSeq 2500 /files/ENCFF206YPV/, /files/ENCFF835QIF/ released mild to moderate bottlenecking, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF997NPD fastq reads ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 2 76 single-ended 1817048529 Bradley Bernstein, Broad 5eaef2d90548327fd50f78ae3149d71b https://www.encodeproject.org/files/ENCFF997NPD/@@download/ENCFF997NPD.fastq.gz Illumina HiSeq 2500 /files/ENCFF082OUX/, /files/ENCFF158HCZ/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/ released mild to moderate bottlenecking, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF789LIM bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 74 ENCFF643CGH, ENCFF717KPM 1987983126 ENCODE Processing Pipeline 72ca8e7655b7bc6d1f040badb3d0ffd6 https://www.encodeproject.org/files/ENCFF789LIM/@@download/ENCFF789LIM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF258ZRS bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF342XVP, ENCFF643CGH, ENCFF997NPD 2628045151 ENCODE Processing Pipeline 2d118af9567733aa9d16f43c6334ea3f https://www.encodeproject.org/files/ENCFF258ZRS/@@download/ENCFF258ZRS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF568YJY bam unfiltered alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF342XVP, ENCFF643CGH, ENCFF997NPD 3514920176 ENCODE Processing Pipeline b526c60a5260f42b29139a073ab358a4 https://www.encodeproject.org/files/ENCFF568YJY/@@download/ENCFF568YJY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF023XOD bam unfiltered alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF643CGH, ENCFF717KPM 2609332734 ENCODE Processing Pipeline 2b193f92154e660150e1d6f62860d465 https://www.encodeproject.org/files/ENCFF023XOD/@@download/ENCFF023XOD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF379RWQ bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 74 ENCFF717KPM, ENCFF807MUK 1986349372 ENCODE Processing Pipeline 4a091108d69ea3ea0904e076461a5b9c https://www.encodeproject.org/files/ENCFF379RWQ/@@download/ENCFF379RWQ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF250ZGW bam unfiltered alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF342XVP, ENCFF807MUK, ENCFF997NPD 3511864214 ENCODE Processing Pipeline 67e43ed3e191529f58a115606e1f2eb8 https://www.encodeproject.org/files/ENCFF250ZGW/@@download/ENCFF250ZGW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF748HWO bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF342XVP, ENCFF807MUK, ENCFF997NPD 2626459468 ENCODE Processing Pipeline 1bca76373be4d7580fd7649789f3e4c6 https://www.encodeproject.org/files/ENCFF748HWO/@@download/ENCFF748HWO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF286FMY bam unfiltered alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 74 ENCFF717KPM, ENCFF807MUK 2602686584 ENCODE Processing Pipeline 1f85afad24b9606b2e08889690efbd45 https://www.encodeproject.org/files/ENCFF286FMY/@@download/ENCFF286FMY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF058TBB bigWig signal p-value ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 1890963225 ENCODE Processing Pipeline c2e64b1f0e478f0375354f54fa6a6337 https://www.encodeproject.org/files/ENCFF058TBB/@@download/ENCFF058TBB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF068MYX bigWig signal p-value ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF175BOB, ENCFF258ZRS, ENCFF615RXB 1815816511 ENCODE Processing Pipeline 8ad3e441379a102cada43e853970f231 https://www.encodeproject.org/files/ENCFF068MYX/@@download/ENCFF068MYX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF954ZFR bigWig signal p-value ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF175BOB, ENCFF258ZRS, ENCFF615RXB, ENCFF789LIM 2074325111 ENCODE Processing Pipeline af339d15dd65ac75068f1bdf584edbb5 https://www.encodeproject.org/files/ENCFF954ZFR/@@download/ENCFF954ZFR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF386BKV bigWig signal p-value ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF175BOB, ENCFF615RXB, ENCFF789LIM 1850065448 ENCODE Processing Pipeline 02e6f01f78c5c171e67bbbc569cbd6e9 https://www.encodeproject.org/files/ENCFF386BKV/@@download/ENCFF386BKV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF553XBH bigWig signal p-value ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379RWQ, ENCFF387KXA, ENCFF762JSN 1733438326 ENCODE Processing Pipeline 1f909a14e4358785a1f925679047a13e https://www.encodeproject.org/files/ENCFF553XBH/@@download/ENCFF553XBH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF945VKD bigWig signal p-value ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF379RWQ, ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 2256116082 ENCODE Processing Pipeline f212a3acfca7c359e5769ab84576c320 https://www.encodeproject.org/files/ENCFF945VKD/@@download/ENCFF945VKD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF450KEL bigWig fold change over control ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF175BOB, ENCFF258ZRS, ENCFF615RXB 1800944627 ENCODE Processing Pipeline de9df6ddda22be102f6f3b73b5eed189 https://www.encodeproject.org/files/ENCFF450KEL/@@download/ENCFF450KEL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF601FUU bigWig fold change over control ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF175BOB, ENCFF615RXB, ENCFF789LIM 1686805792 ENCODE Processing Pipeline 0239011f9757d7a1e32c93f136cc7cfa https://www.encodeproject.org/files/ENCFF601FUU/@@download/ENCFF601FUU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF868MZX bigBed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF890NFL 11747541 ENCODE Processing Pipeline 4e4e5b166d011e05000a4d7ccc4a6114 https://www.encodeproject.org/files/ENCFF868MZX/@@download/ENCFF868MZX.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF573GSH bigWig fold change over control ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF175BOB, ENCFF258ZRS, ENCFF615RXB, ENCFF789LIM 2238969232 ENCODE Processing Pipeline 467f286729f46f8775bbffc54ac5f818 https://www.encodeproject.org/files/ENCFF573GSH/@@download/ENCFF573GSH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF297AAW bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF175BOB, ENCFF258ZRS, ENCFF615RXB, ENCFF789LIM 6830135 ENCODE Processing Pipeline b2df0e87bfe92878deff20520729a78d https://www.encodeproject.org/files/ENCFF297AAW/@@download/ENCFF297AAW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF288BXC bigBed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF506JKY 14116762 ENCODE Processing Pipeline 59cc67c4685fd13fdb0d88a1ca6d32b9 https://www.encodeproject.org/files/ENCFF288BXC/@@download/ENCFF288BXC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF990FWP bigBed narrowPeak optimal idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF560GGY 1656678 ENCODE Processing Pipeline e66d2afe0ae31a13cc1cc89d7024a675 https://www.encodeproject.org/files/ENCFF990FWP/@@download/ENCFF990FWP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF940XMP bigWig fold change over control ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 1780435526 ENCODE Processing Pipeline 13b3b44520e63c0fc2076b86bceed472 https://www.encodeproject.org/files/ENCFF940XMP/@@download/ENCFF940XMP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF560GGY bed narrowPeak optimal idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF297AAW, ENCFF419RSJ, ENCFF506JKY, ENCFF890NFL 1051480 ENCODE Processing Pipeline b373e2f14cb99af736df42b1c5ef0fdc https://www.encodeproject.org/files/ENCFF560GGY/@@download/ENCFF560GGY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF890NFL bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF175BOB, ENCFF615RXB, ENCFF789LIM 6279868 ENCODE Processing Pipeline bd9a959d1feaed6e2b63e8b970172fd2 https://www.encodeproject.org/files/ENCFF890NFL/@@download/ENCFF890NFL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF466CES bigWig fold change over control ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379RWQ, ENCFF387KXA, ENCFF762JSN 1695001429 ENCODE Processing Pipeline 6f49dfc0a6c4ef395d9be49cc91f3c3d https://www.encodeproject.org/files/ENCFF466CES/@@download/ENCFF466CES.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF506JKY bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF175BOB, ENCFF258ZRS, ENCFF615RXB 6720144 ENCODE Processing Pipeline 96ffa59b87196536755a22ebc10017f0 https://www.encodeproject.org/files/ENCFF506JKY/@@download/ENCFF506JKY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF102XIH bed narrowPeak conservative idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF297AAW, ENCFF419RSJ, ENCFF506JKY, ENCFF890NFL 988499 ENCODE Processing Pipeline e1201a846b1a09cafb6e50d9a8d5055f https://www.encodeproject.org/files/ENCFF102XIH/@@download/ENCFF102XIH.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF060VWK bigBed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF983BJS 14007738 ENCODE Processing Pipeline 8554283b436f0d7662eab52d077abfc8 https://www.encodeproject.org/files/ENCFF060VWK/@@download/ENCFF060VWK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF335YDB bigBed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF297AAW 14107976 ENCODE Processing Pipeline 118b31042bb873b4338e070d7f0f3c6f https://www.encodeproject.org/files/ENCFF335YDB/@@download/ENCFF335YDB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF180ILP bigBed narrowPeak conservative idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF102XIH 1582371 ENCODE Processing Pipeline 29880a2ec70a16f48b2bc2dc060d9267 https://www.encodeproject.org/files/ENCFF180ILP/@@download/ENCFF180ILP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF983BJS bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 6641165 ENCODE Processing Pipeline 1d029aa74a6edd58f48d9d753a509270 https://www.encodeproject.org/files/ENCFF983BJS/@@download/ENCFF983BJS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF904ARY bigBed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF230HEO 11735900 ENCODE Processing Pipeline 7cd86e077c831b7488695e18e50c97b8 https://www.encodeproject.org/files/ENCFF904ARY/@@download/ENCFF904ARY.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF078EIE bigBed narrowPeak conservative idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF796YPF 1579876 ENCODE Processing Pipeline c56af904640ce8daf4b91a3e90d575ef https://www.encodeproject.org/files/ENCFF078EIE/@@download/ENCFF078EIE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF886ADE bigBed narrowPeak optimal idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF072ZEU 1658593 ENCODE Processing Pipeline cc8fc2d947df4d32305cab236665b309 https://www.encodeproject.org/files/ENCFF886ADE/@@download/ENCFF886ADE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF230HEO bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379RWQ, ENCFF387KXA, ENCFF762JSN 6283060 ENCODE Processing Pipeline 6bd035ce5f6076037cebcab24c8b18c8 https://www.encodeproject.org/files/ENCFF230HEO/@@download/ENCFF230HEO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF792VDE bigWig fold change over control ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF379RWQ, ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 2233698810 ENCODE Processing Pipeline df616333c17971175c4fd9cbb0e7b57f https://www.encodeproject.org/files/ENCFF792VDE/@@download/ENCFF792VDE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF888EDU bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF379RWQ, ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 6869594 ENCODE Processing Pipeline f083824cbe579cf750d8644b9489def4 https://www.encodeproject.org/files/ENCFF888EDU/@@download/ENCFF888EDU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF805WBE bigBed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF888EDU 14146134 ENCODE Processing Pipeline 65d6742558ed712aede1333449955fca https://www.encodeproject.org/files/ENCFF805WBE/@@download/ENCFF805WBE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF796YPF bed narrowPeak conservative idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF230HEO, ENCFF888EDU, ENCFF983BJS 986602 ENCODE Processing Pipeline af5920989e462c4486053b1f4b565d4a https://www.encodeproject.org/files/ENCFF796YPF/@@download/ENCFF796YPF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF072ZEU bed narrowPeak optimal idr thresholded peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF230HEO, ENCFF888EDU, ENCFF983BJS 1051859 ENCODE Processing Pipeline 1aeb7830409a87e0443bd93fbd773235 https://www.encodeproject.org/files/ENCFF072ZEU/@@download/ENCFF072ZEU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF181RRM bam unfiltered alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 36 ENCFF499TRH, ENCFF702LEK, ENCFF807MUK 8198593304 ENCODE Processing Pipeline d14a1b2ad5e28e3e8fdaec39c3f34860 https://www.encodeproject.org/files/ENCFF181RRM/@@download/ENCFF181RRM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF702LEK fastq reads ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 2 36 single-ended 3208646516 Bradley Bernstein, Broad 157bb9f940c3685b48422d692a4beb8e https://www.encodeproject.org/files/ENCFF702LEK/@@download/ENCFF702LEK.fastq.gz Illumina HiSeq 2500 /files/ENCFF137UFY/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF499TRH fastq reads ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 1 36 single-ended 3240827256 Bradley Bernstein, Broad 57948fb0dbba1edd58bb9c2674e42616 https://www.encodeproject.org/files/ENCFF499TRH/@@download/ENCFF499TRH.fastq.gz Illumina HiSeq 2500 /files/ENCFF137UFY/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF131TJJ fastq reads ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 25 paired-ended 1 ENCFF979YVJ 681832407 Bradley Bernstein, Broad 6ef9f11031a0447f78ada3b479c3e9d3 https://www.encodeproject.org/files/ENCFF131TJJ/@@download/ENCFF131TJJ.fastq.gz Illumina HiSeq 2000 archived low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO missing controlled_by ENCFF979YVJ fastq reads ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 25 paired-ended 2 ENCFF131TJJ 691703045 Bradley Bernstein, Broad 29a058093d90ef16016f7a608d53c283 https://www.encodeproject.org/files/ENCFF979YVJ/@@download/ENCFF979YVJ.fastq.gz Illumina HiSeq 2000 archived low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO missing controlled_by ENCFF536GEN bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF499TRH, ENCFF702LEK, ENCFF807MUK 5493650852 ENCODE Processing Pipeline 9faec36952a233a4c69f1d7456d9d1e9 https://www.encodeproject.org/files/ENCFF536GEN/@@download/ENCFF536GEN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF684UWO fastq reads ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 76 single-ended 816398283 Bradley Bernstein, Broad 1cae905d24b918613c6b338a1905b770 https://www.encodeproject.org/files/ENCFF684UWO/@@download/ENCFF684UWO.fastq.gz Illumina HiSeq 2500 /files/ENCFF169TIB/, /files/ENCFF466ORS/, /files/ENCFF630PTQ/, /files/ENCFF910KYS/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF145CLU fastq reads ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 76 single-ended 824845759 Bradley Bernstein, Broad b2f8640ee07d81e0f27c325665d0bbda https://www.encodeproject.org/files/ENCFF145CLU/@@download/ENCFF145CLU.fastq.gz Illumina HiSeq 2500 /files/ENCFF169TIB/, /files/ENCFF466ORS/, /files/ENCFF630PTQ/, /files/ENCFF910KYS/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF623PFT bam unfiltered alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 36 ENCFF499TRH, ENCFF643CGH, ENCFF702LEK 8250076948 ENCODE Processing Pipeline 68c7961122d124255273dd542b6b8413 https://www.encodeproject.org/files/ENCFF623PFT/@@download/ENCFF623PFT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF222RLY bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 36 ENCFF499TRH, ENCFF643CGH, ENCFF702LEK 5492356272 ENCODE Processing Pipeline 63e523858699a95e11b5f5453fa99405 https://www.encodeproject.org/files/ENCFF222RLY/@@download/ENCFF222RLY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF387XFQ bam unfiltered alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF145CLU, ENCFF643CGH, ENCFF684UWO 1062008956 ENCODE Processing Pipeline 527fa509363d5ebe0ba69e9db1fc57dd https://www.encodeproject.org/files/ENCFF387XFQ/@@download/ENCFF387XFQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF374UZT bam unfiltered alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF145CLU, ENCFF684UWO, ENCFF807MUK 1055694932 ENCODE Processing Pipeline 6accf516cb43480c19cfb522024bd6ea https://www.encodeproject.org/files/ENCFF374UZT/@@download/ENCFF374UZT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF181NFB bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF145CLU, ENCFF643CGH, ENCFF684UWO 713054293 ENCODE Processing Pipeline 69e36e85fb7a44ede575af78080a38a0 https://www.encodeproject.org/files/ENCFF181NFB/@@download/ENCFF181NFB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF429JNW bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF145CLU, ENCFF684UWO, ENCFF807MUK 713345133 ENCODE Processing Pipeline fb00ce966369481093388775bad69d44 https://www.encodeproject.org/files/ENCFF429JNW/@@download/ENCFF429JNW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF440JEF bigWig signal p-value ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF429JNW, ENCFF824DBS 858985311 ENCODE Processing Pipeline 3d2ff5c4d0c2c070a0f000cc1bff5c18 https://www.encodeproject.org/files/ENCFF440JEF/@@download/ENCFF440JEF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF577RGK bigWig fold change over control ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF429JNW, ENCFF824DBS 722578822 ENCODE Processing Pipeline facd24226ba0da62e9153970acc355c9 https://www.encodeproject.org/files/ENCFF577RGK/@@download/ENCFF577RGK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF922ONI bigWig signal p-value ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF011BPU, ENCFF429JNW, ENCFF536GEN, ENCFF824DBS 2283359533 ENCODE Processing Pipeline b31e1b37009f25b9b1bd53f33d6becc2 https://www.encodeproject.org/files/ENCFF922ONI/@@download/ENCFF922ONI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF638DVL bigWig fold change over control ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF011BPU, ENCFF536GEN, ENCFF824DBS 2459386655 ENCODE Processing Pipeline d832622386bd072c38b5ff8c08048603 https://www.encodeproject.org/files/ENCFF638DVL/@@download/ENCFF638DVL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF957LOO bigBed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF725JDK 5013079 ENCODE Processing Pipeline 2d1d6cc91fc96c5e022894fb598d232a https://www.encodeproject.org/files/ENCFF957LOO/@@download/ENCFF957LOO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF817DYV bigBed narrowPeak optimal idr thresholded peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF905EBM 128165 ENCODE Processing Pipeline a33dc79bd4b9dcfd48e43b41c8a9bc0c https://www.encodeproject.org/files/ENCFF817DYV/@@download/ENCFF817DYV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF116HLF bigWig signal p-value ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF011BPU, ENCFF536GEN, ENCFF824DBS 2301864514 ENCODE Processing Pipeline 7937f48f923f82899685212a41f68f90 https://www.encodeproject.org/files/ENCFF116HLF/@@download/ENCFF116HLF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF681IUX bigWig fold change over control ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF011BPU, ENCFF429JNW, ENCFF536GEN, ENCFF824DBS 2599648920 ENCODE Processing Pipeline bc2703ad69234a636349cbbf77d4da1f https://www.encodeproject.org/files/ENCFF681IUX/@@download/ENCFF681IUX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF355WZV bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF429JNW, ENCFF824DBS 5951394 ENCODE Processing Pipeline 689bcd85a94bdcbb93b8f94da9322e50 https://www.encodeproject.org/files/ENCFF355WZV/@@download/ENCFF355WZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF725JDK bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF011BPU, ENCFF536GEN, ENCFF824DBS 2546615 ENCODE Processing Pipeline 73659440cf11ea61b2843f4494dcf902 https://www.encodeproject.org/files/ENCFF725JDK/@@download/ENCFF725JDK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF138QJZ bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF011BPU, ENCFF429JNW, ENCFF536GEN, ENCFF824DBS 2059602 ENCODE Processing Pipeline abb535765428ec3e404768ab090fe8e8 https://www.encodeproject.org/files/ENCFF138QJZ/@@download/ENCFF138QJZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF681ZZA bigBed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF355WZV 13312267 ENCODE Processing Pipeline e865a120a389516c82946b0515b869e3 https://www.encodeproject.org/files/ENCFF681ZZA/@@download/ENCFF681ZZA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF983VZA bigBed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF138QJZ 4075978 ENCODE Processing Pipeline b4ced84051aa99397cd22c16fd4cc3b8 https://www.encodeproject.org/files/ENCFF983VZA/@@download/ENCFF983VZA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF905EBM bed narrowPeak optimal idr thresholded peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF001TDO, ENCFF138QJZ, ENCFF355WZV, ENCFF725JDK 27025 ENCODE Processing Pipeline 6f8fb897b7d3c2a99b4b4753454bc67f https://www.encodeproject.org/files/ENCFF905EBM/@@download/ENCFF905EBM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF559WST bigWig signal p-value ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF186KKP, ENCFF222RLY, ENCFF550VRT 2318776268 ENCODE Processing Pipeline b490b032e31323ad1aa1f3ed3deea89a https://www.encodeproject.org/files/ENCFF559WST/@@download/ENCFF559WST.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF025ACH bigBed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF288DNS 13308188 ENCODE Processing Pipeline 96ca505c22b428f69e1065c60349fccc https://www.encodeproject.org/files/ENCFF025ACH/@@download/ENCFF025ACH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF025UEJ bigWig signal p-value ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF181NFB, ENCFF186KKP 863591983 ENCODE Processing Pipeline 307ee86508fd9f8c1a13039745d445f3 https://www.encodeproject.org/files/ENCFF025UEJ/@@download/ENCFF025UEJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF783DND bigWig fold change over control ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF181NFB, ENCFF186KKP 728748395 ENCODE Processing Pipeline cb487f71f3aa3770fe2ad3ffe86a7a92 https://www.encodeproject.org/files/ENCFF783DND/@@download/ENCFF783DND.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF288DNS bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF181NFB, ENCFF186KKP 5904036 ENCODE Processing Pipeline 03823a4822ee4fcdcc86b379088fcdd5 https://www.encodeproject.org/files/ENCFF288DNS/@@download/ENCFF288DNS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF914TJG bigBed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF043KLT 5164060 ENCODE Processing Pipeline ec35f8fc6bee5d2249a6a781714f489a https://www.encodeproject.org/files/ENCFF914TJG/@@download/ENCFF914TJG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF829MEK bigWig signal p-value ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF181NFB, ENCFF186KKP, ENCFF222RLY, ENCFF550VRT 2283134544 ENCODE Processing Pipeline 8aa848aea62c40defed05e6606839484 https://www.encodeproject.org/files/ENCFF829MEK/@@download/ENCFF829MEK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF793LKM bigWig fold change over control ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF186KKP, ENCFF222RLY, ENCFF550VRT 2474041835 ENCODE Processing Pipeline 841bb636bcc342d67e1fcd2730fe30a1 https://www.encodeproject.org/files/ENCFF793LKM/@@download/ENCFF793LKM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF345NNP bigWig fold change over control ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF181NFB, ENCFF186KKP, ENCFF222RLY, ENCFF550VRT 2600530858 ENCODE Processing Pipeline 2afaa5171a64dae46b3fdb50be29fe47 https://www.encodeproject.org/files/ENCFF345NNP/@@download/ENCFF345NNP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF043KLT bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF186KKP, ENCFF222RLY, ENCFF550VRT 2636299 ENCODE Processing Pipeline 0da2ee88540eb74e4a0e2d5c4155b3c5 https://www.encodeproject.org/files/ENCFF043KLT/@@download/ENCFF043KLT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF465KNU bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF181NFB, ENCFF186KKP, ENCFF222RLY, ENCFF550VRT 2083377 ENCODE Processing Pipeline eaa7a1c02626b6659ab45e0338c61fc2 https://www.encodeproject.org/files/ENCFF465KNU/@@download/ENCFF465KNU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF610QSC bigBed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF465KNU 4120142 ENCODE Processing Pipeline bef18e5ae428f68eec9fcc075ea726f3 https://www.encodeproject.org/files/ENCFF610QSC/@@download/ENCFF610QSC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF898WNN bed narrowPeak conservative idr thresholded peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF043KLT, ENCFF288DNS, ENCFF419RSJ, ENCFF465KNU 24242 ENCODE Processing Pipeline 9896d4ac4e9a39e36781cd6221226cbc https://www.encodeproject.org/files/ENCFF898WNN/@@download/ENCFF898WNN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF975HGC bigBed narrowPeak conservative idr thresholded peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF898WNN 123380 ENCODE Processing Pipeline 20f0be137ea70db185ba57b8a47655f2 https://www.encodeproject.org/files/ENCFF975HGC/@@download/ENCFF975HGC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF253WCQ bed narrowPeak optimal idr thresholded peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF043KLT, ENCFF288DNS, ENCFF419RSJ, ENCFF465KNU 25636 ENCODE Processing Pipeline 874f895553720ad2a1c2d35a8f4f27ed https://www.encodeproject.org/files/ENCFF253WCQ/@@download/ENCFF253WCQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF138BXR bigBed narrowPeak optimal idr thresholded peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF253WCQ 126520 ENCODE Processing Pipeline 3f2bce212e84eea6010c7447be13f432 https://www.encodeproject.org/files/ENCFF138BXR/@@download/ENCFF138BXR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF290TCQ fastq reads ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF514DNW 2905071180 Michael Snyder, Stanford e0141f2decafe2143f12498db6aef4f7 SRA:SRR5112023 https://www.encodeproject.org/files/ENCFF290TCQ/@@download/ENCFF290TCQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released ENCFF514DNW fastq reads ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF290TCQ 2876549945 Michael Snyder, Stanford 0e7453d421184330357b98a3b992e7fd SRA:SRR5112023 https://www.encodeproject.org/files/ENCFF514DNW/@@download/ENCFF514DNW.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released ENCFF015SCZ fastq reads ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF580QBV 4018327708 Michael Snyder, Stanford e883d8db2d18a8b2ae0a750e5d1d105d SRA:SRR5112022 https://www.encodeproject.org/files/ENCFF015SCZ/@@download/ENCFF015SCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released ENCFF580QBV fastq reads ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF015SCZ 4034680499 Michael Snyder, Stanford dd94c980f193bbfa4645fc41969a6ff3 SRA:SRR5112022 https://www.encodeproject.org/files/ENCFF580QBV/@@download/ENCFF580QBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released ENCFF199QMH bam unfiltered alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 100 ENCFF290TCQ, ENCFF514DNW, ENCFF807MUK 5860004236 ENCODE Processing Pipeline 82ff2b9f943db56856b3fb7d9c9b8a09 https://www.encodeproject.org/files/ENCFF199QMH/@@download/ENCFF199QMH.bam hg19 released ENCFF163BLU bam unfiltered alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 100 ENCFF015SCZ, ENCFF580QBV, ENCFF807MUK 7932317247 ENCODE Processing Pipeline 6d9f21b488d931d6f2c66195f56ccbe0 https://www.encodeproject.org/files/ENCFF163BLU/@@download/ENCFF163BLU.bam hg19 released ENCFF229UUP bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 100 ENCFF290TCQ, ENCFF514DNW, ENCFF807MUK 4932554878 ENCODE Processing Pipeline 28c0a9ece10ce6ea9a7920a77b4d8105 https://www.encodeproject.org/files/ENCFF229UUP/@@download/ENCFF229UUP.bam hg19 released ENCFF159EUB bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 100 ENCFF015SCZ, ENCFF580QBV, ENCFF807MUK 6753842824 ENCODE Processing Pipeline 317e5228ef353b9568bdbef3b371b537 https://www.encodeproject.org/files/ENCFF159EUB/@@download/ENCFF159EUB.bam hg19 released ENCFF943PTK bam unfiltered alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 100 ENCFF290TCQ, ENCFF514DNW, ENCFF643CGH 5868365265 ENCODE Processing Pipeline 6014b0445b62e61bc87185458e4e19bf https://www.encodeproject.org/files/ENCFF943PTK/@@download/ENCFF943PTK.bam GRCh38 released ENCFF092SQY bam unfiltered alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 100 ENCFF015SCZ, ENCFF580QBV, ENCFF643CGH 7941610207 ENCODE Processing Pipeline 8790eebc5ae06ba1d3699a0c41588d47 https://www.encodeproject.org/files/ENCFF092SQY/@@download/ENCFF092SQY.bam GRCh38 released ENCFF158YRG bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 100 ENCFF290TCQ, ENCFF514DNW, ENCFF643CGH 4938246740 ENCODE Processing Pipeline a7203c9b0761a8c51b7dba66993cf4f3 https://www.encodeproject.org/files/ENCFF158YRG/@@download/ENCFF158YRG.bam GRCh38 released ENCFF592NOJ bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 100 ENCFF015SCZ, ENCFF580QBV, ENCFF643CGH 6760808143 ENCODE Processing Pipeline d11cf06298139ce3967584d60cbed8d7 https://www.encodeproject.org/files/ENCFF592NOJ/@@download/ENCFF592NOJ.bam GRCh38 released ENCFF318RCH bigWig signal p-value ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF592NOJ 1771940218 ENCODE Processing Pipeline 7d009369d51d2d0ddba70cf6ff38e95e https://www.encodeproject.org/files/ENCFF318RCH/@@download/ENCFF318RCH.bigWig GRCh38 released ENCFF792UCB bigWig signal p-value ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF158YRG, ENCFF290DLX 982724637 ENCODE Processing Pipeline df99c5286d31eda715020111677b583d https://www.encodeproject.org/files/ENCFF792UCB/@@download/ENCFF792UCB.bigWig GRCh38 released ENCFF104KEK bigWig signal p-value ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF158YRG, ENCFF290DLX, ENCFF488RJA, ENCFF592NOJ 2286828516 ENCODE Processing Pipeline cce86de362e20dde6c127d542f93939b https://www.encodeproject.org/files/ENCFF104KEK/@@download/ENCFF104KEK.bigWig GRCh38 released ENCFF680VYX bigWig fold change over control ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF592NOJ 1854409696 ENCODE Processing Pipeline fc2091305163294664641276517a4af9 https://www.encodeproject.org/files/ENCFF680VYX/@@download/ENCFF680VYX.bigWig GRCh38 released ENCFF695ZFU bigWig fold change over control ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF158YRG, ENCFF290DLX 1153020437 ENCODE Processing Pipeline febd95c9e55ff0702a0f4de9e651a1bb https://www.encodeproject.org/files/ENCFF695ZFU/@@download/ENCFF695ZFU.bigWig GRCh38 released ENCFF251VAC bigWig fold change over control ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF158YRG, ENCFF290DLX, ENCFF488RJA, ENCFF592NOJ 2284224121 ENCODE Processing Pipeline 24b6f565a30a4f1fdf42017a1ca4faf8 https://www.encodeproject.org/files/ENCFF251VAC/@@download/ENCFF251VAC.bigWig GRCh38 released ENCFF133BEB bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF158YRG, ENCFF290DLX 6096991 ENCODE Processing Pipeline 438c8e5e591b4e418cf1b7fa16284e74 https://www.encodeproject.org/files/ENCFF133BEB/@@download/ENCFF133BEB.bed.gz GRCh38 released ENCFF908ROA bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF592NOJ 6587264 ENCODE Processing Pipeline 97f270d4fb5c7996407606aab323f74a https://www.encodeproject.org/files/ENCFF908ROA/@@download/ENCFF908ROA.bed.gz GRCh38 released ENCFF445ZOB bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF158YRG, ENCFF290DLX, ENCFF488RJA, ENCFF592NOJ 7262084 ENCODE Processing Pipeline 791b60dba391dfae0c6369dd6b6a3271 https://www.encodeproject.org/files/ENCFF445ZOB/@@download/ENCFF445ZOB.bed.gz GRCh38 released ENCFF311GIA bigBed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF908ROA 11344938 ENCODE Processing Pipeline c2a47c02050dd805ff3c26515053e764 https://www.encodeproject.org/files/ENCFF311GIA/@@download/ENCFF311GIA.bigBed GRCh38 released ENCFF746RAM bigBed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF133BEB 11277652 ENCODE Processing Pipeline cef3429b3c9ae8c33899df094a70a028 https://www.encodeproject.org/files/ENCFF746RAM/@@download/ENCFF746RAM.bigBed GRCh38 released ENCFF191MNC bigBed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF445ZOB 11324131 ENCODE Processing Pipeline 61e5e242d1dac84eb6e91b268a4c422c https://www.encodeproject.org/files/ENCFF191MNC/@@download/ENCFF191MNC.bigBed GRCh38 released ENCFF317FRG bigBed narrowPeak conservative idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF735JKV 139109 ENCODE Processing Pipeline 3c8c8ef75059ea84d64947e04a069292 https://www.encodeproject.org/files/ENCFF317FRG/@@download/ENCFF317FRG.bigBed GRCh38 released ENCFF735JKV bed narrowPeak conservative idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF133BEB, ENCFF419RSJ, ENCFF445ZOB, ENCFF908ROA 51656 ENCODE Processing Pipeline 328cb1c0a20716436dc80837ad587f90 https://www.encodeproject.org/files/ENCFF735JKV/@@download/ENCFF735JKV.bed.gz GRCh38 released ENCFF538GJM bigBed narrowPeak optimal idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF110UZZ 156592 ENCODE Processing Pipeline 6de55409e94209166d2f52b0617fcdaf https://www.encodeproject.org/files/ENCFF538GJM/@@download/ENCFF538GJM.bigBed GRCh38 released ENCFF110UZZ bed narrowPeak optimal idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF133BEB, ENCFF419RSJ, ENCFF445ZOB, ENCFF908ROA 63169 ENCODE Processing Pipeline 19f1b71b6051895826d86dee2ff6144c https://www.encodeproject.org/files/ENCFF110UZZ/@@download/ENCFF110UZZ.bed.gz GRCh38 released ENCFF279NLM bigWig signal p-value ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF159EUB, ENCFF760DHW 1862194260 ENCODE Processing Pipeline 4f140e542768997403909dbb327857a0 https://www.encodeproject.org/files/ENCFF279NLM/@@download/ENCFF279NLM.bigWig hg19 released ENCFF279WPD bigWig signal p-value ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF229UUP, ENCFF760DHW 1117121329 ENCODE Processing Pipeline 759e718f30467e864f2e2b6d8dbceb3f https://www.encodeproject.org/files/ENCFF279WPD/@@download/ENCFF279WPD.bigWig hg19 released ENCFF080OYX bigWig signal p-value ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF159EUB, ENCFF229UUP, ENCFF760DHW 1743484845 ENCODE Processing Pipeline 53e6f03548770c7e53bec13194fb5605 https://www.encodeproject.org/files/ENCFF080OYX/@@download/ENCFF080OYX.bigWig hg19 released ENCFF635VOE bigWig fold change over control ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF159EUB, ENCFF760DHW 1847728584 ENCODE Processing Pipeline b071d8133ac8cf18af0035e7d702f2ac https://www.encodeproject.org/files/ENCFF635VOE/@@download/ENCFF635VOE.bigWig hg19 released ENCFF971POU bigWig fold change over control ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF229UUP, ENCFF760DHW 1151109875 ENCODE Processing Pipeline c8e8c6b5a89585bdca3e4c51c142536c https://www.encodeproject.org/files/ENCFF971POU/@@download/ENCFF971POU.bigWig hg19 released ENCFF586VBM bigWig fold change over control ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF159EUB, ENCFF229UUP, ENCFF760DHW 2283894111 ENCODE Processing Pipeline ef62c9140feff4b6f5e845e34c0784ef https://www.encodeproject.org/files/ENCFF586VBM/@@download/ENCFF586VBM.bigWig hg19 released ENCFF278ZIL bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF159EUB, ENCFF229UUP, ENCFF760DHW 7253578 ENCODE Processing Pipeline 6ace3e2215c0e13968286236f3cc4dff https://www.encodeproject.org/files/ENCFF278ZIL/@@download/ENCFF278ZIL.bed.gz hg19 released ENCFF614ENJ bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF159EUB, ENCFF760DHW 6579704 ENCODE Processing Pipeline 9465af03f82d46961a8ef03e93362fa2 https://www.encodeproject.org/files/ENCFF614ENJ/@@download/ENCFF614ENJ.bed.gz hg19 released ENCFF903JKN bigBed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF614ENJ 11326915 ENCODE Processing Pipeline ed273d14fef889bcf99624ee116e550a https://www.encodeproject.org/files/ENCFF903JKN/@@download/ENCFF903JKN.bigBed hg19 released ENCFF911RQN bed narrowPeak optimal idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF278ZIL, ENCFF397APL, ENCFF614ENJ 60947 ENCODE Processing Pipeline 057cbd7bec7f84d0b6e7978a79558d2e https://www.encodeproject.org/files/ENCFF911RQN/@@download/ENCFF911RQN.bed.gz hg19 released ENCFF671PTV bigBed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF278ZIL 11305267 ENCODE Processing Pipeline c803433e2ccf1323bbdedd6357d283c6 https://www.encodeproject.org/files/ENCFF671PTV/@@download/ENCFF671PTV.bigBed hg19 released ENCFF599JWP bed narrowPeak conservative idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF278ZIL, ENCFF397APL, ENCFF614ENJ 49068 ENCODE Processing Pipeline 68cdb9a2c863997ebf754f1a2bb1b99d https://www.encodeproject.org/files/ENCFF599JWP/@@download/ENCFF599JWP.bed.gz hg19 released ENCFF486LYR bigBed narrowPeak optimal idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF911RQN 150420 ENCODE Processing Pipeline e044bbb6ce03f3ba4a36b7088f2b1455 https://www.encodeproject.org/files/ENCFF486LYR/@@download/ENCFF486LYR.bigBed hg19 released ENCFF397APL bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF229UUP, ENCFF760DHW 6091011 ENCODE Processing Pipeline e7eeb8d15378936a2d66d41bc3c8b987 https://www.encodeproject.org/files/ENCFF397APL/@@download/ENCFF397APL.bed.gz hg19 released ENCFF782CNZ bigBed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF397APL 11257290 ENCODE Processing Pipeline 88004a2841046e3e925539ff3fb8794d https://www.encodeproject.org/files/ENCFF782CNZ/@@download/ENCFF782CNZ.bigBed hg19 released ENCFF400MVK bigBed narrowPeak conservative idr thresholded peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF599JWP 133386 ENCODE Processing Pipeline e0e2aac6321f3f0774bab420fde6d604 https://www.encodeproject.org/files/ENCFF400MVK/@@download/ENCFF400MVK.bigBed hg19 released ENCFF000RDE bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000RDS 1440326795 Richard Myers, HAIB c75d7b2cefaa4197f16b7ef0b4080731 https://www.encodeproject.org/files/ENCFF000RDE/@@download/ENCFF000RDE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000RDF bigBed broadPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UQF 265105 Richard Myers, HAIB 2139646714a66c3a947a466b5fa145c3 https://www.encodeproject.org/files/ENCFF000RDF/@@download/ENCFF000RDF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000RDG bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000RDR 1453143371 Richard Myers, HAIB 39afb08bead873d98e9e09eb044df276 https://www.encodeproject.org/files/ENCFF000RDG/@@download/ENCFF000RDG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000RDH bigBed broadPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UQG 666330 Richard Myers, HAIB b9b1d7da4575cc5541b0620032572c32 https://www.encodeproject.org/files/ENCFF000RDH/@@download/ENCFF000RDH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000RDI bigWig raw signal ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 17541181 Richard Myers, HAIB 7574160a93744ff8ebc7eaacc5dcaa35 https://www.encodeproject.org/files/ENCFF000RDI/@@download/ENCFF000RDI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RDK bigWig raw signal ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 25115827 Richard Myers, HAIB 8928d8b81d7ca38daf93c875c357bbc0 https://www.encodeproject.org/files/ENCFF000RDK/@@download/ENCFF000RDK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RDR fastq reads ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1477305399 Richard Myers, HAIB 474162d5a3cfecb646684645dda5b162 https://www.encodeproject.org/files/ENCFF000RDR/@@download/ENCFF000RDR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCC/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000RDS fastq reads ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1483067580 Richard Myers, HAIB e5be3b641a1cd36196910056546e2919 https://www.encodeproject.org/files/ENCFF000RDS/@@download/ENCFF000RDS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCC/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF001UQF bed broadPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 148910 Richard Myers, HAIB 5e76dd10fb62e93d8e58c6252694b757 https://www.encodeproject.org/files/ENCFF001UQF/@@download/ENCFF001UQF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UQG bed broadPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 414375 Richard Myers, HAIB da8b05e4339db136073fb60235c335ff https://www.encodeproject.org/files/ENCFF001UQG/@@download/ENCFF001UQG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CNN bed narrowPeak optimal idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 312512 ENCODE Consortium Analysis Working Group f7d783668cd94e5bdfcd189e4507f1ac https://www.encodeproject.org/files/ENCFF002CNN/@@download/ENCFF002CNN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF756IGL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNN 814578 ENCODE Consortium 8ff74d55b1b406b4d78c404d4d8eb623 https://www.encodeproject.org/files/ENCFF756IGL/@@download/ENCFF756IGL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF833WOK bam unfiltered alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDR, ENCFF643CGH 1564157531 ENCODE Processing Pipeline 9873e572a820306657203a12c731b574 https://www.encodeproject.org/files/ENCFF833WOK/@@download/ENCFF833WOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF316XFH bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDR, ENCFF643CGH 698288274 ENCODE Processing Pipeline 246f571fd1fa85f17a388d1f83ed5ff8 https://www.encodeproject.org/files/ENCFF316XFH/@@download/ENCFF316XFH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF511XTS bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDS, ENCFF643CGH 763817119 ENCODE Processing Pipeline ae14b94fa876d870e290f64e96fa748b https://www.encodeproject.org/files/ENCFF511XTS/@@download/ENCFF511XTS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF958VAF bam unfiltered alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDS, ENCFF643CGH 1564023347 ENCODE Processing Pipeline 5dc79fb5a6b1d0e63c36e77637d980b9 https://www.encodeproject.org/files/ENCFF958VAF/@@download/ENCFF958VAF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF327WGZ bam unfiltered alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDS, ENCFF807MUK 1556375325 ENCODE Processing Pipeline 8dcc191733c7874f5d27a95a8fc22223 https://www.encodeproject.org/files/ENCFF327WGZ/@@download/ENCFF327WGZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF125YJB bam unfiltered alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDR, ENCFF807MUK 1558164262 ENCODE Processing Pipeline 8d8b5a96601f667f4922e560818a71b3 https://www.encodeproject.org/files/ENCFF125YJB/@@download/ENCFF125YJB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF916OWO bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDS, ENCFF807MUK 764192275 ENCODE Processing Pipeline 68954f7faa8dd1f83ba422315aa4315b https://www.encodeproject.org/files/ENCFF916OWO/@@download/ENCFF916OWO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF185JZF bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDR, ENCFF807MUK 698587648 ENCODE Processing Pipeline 44e70fffbf2f7f20708d5d062660d076 https://www.encodeproject.org/files/ENCFF185JZF/@@download/ENCFF185JZF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF185UJL bigWig signal p-value ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF511XTS, ENCFF798ORT 459293764 ENCODE Processing Pipeline 5c48865f14cfee95faca94445702cdbe https://www.encodeproject.org/files/ENCFF185UJL/@@download/ENCFF185UJL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF497TIP bigWig signal p-value ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF316XFH, ENCFF798ORT 498847891 ENCODE Processing Pipeline b16969a64fa1f887b0f570c3b66ddbfa https://www.encodeproject.org/files/ENCFF497TIP/@@download/ENCFF497TIP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF167MXL bigWig signal p-value ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF316XFH, ENCFF511XTS, ENCFF798ORT 606725149 ENCODE Processing Pipeline 45bf28b5a7310711c0f17b2822fe08cb https://www.encodeproject.org/files/ENCFF167MXL/@@download/ENCFF167MXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF139CGS bigWig fold change over control ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF511XTS, ENCFF798ORT 364471765 ENCODE Processing Pipeline f1070579d255a8a12e33d36f0e24b30f https://www.encodeproject.org/files/ENCFF139CGS/@@download/ENCFF139CGS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF867MCT bigWig fold change over control ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF316XFH, ENCFF798ORT 329768686 ENCODE Processing Pipeline 7c9657d735c4cbbb8a40cc4698fb7417 https://www.encodeproject.org/files/ENCFF867MCT/@@download/ENCFF867MCT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF342FDS bigWig fold change over control ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF316XFH, ENCFF511XTS, ENCFF798ORT 610194035 ENCODE Processing Pipeline d5fb34ee0afff4d38dc4c467e71a6f29 https://www.encodeproject.org/files/ENCFF342FDS/@@download/ENCFF342FDS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF358MIL bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF316XFH, ENCFF798ORT 4896777 ENCODE Processing Pipeline 0e1ddb85587263b78900368b9f0e240e https://www.encodeproject.org/files/ENCFF358MIL/@@download/ENCFF358MIL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF255DCQ bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF511XTS, ENCFF798ORT 3975964 ENCODE Processing Pipeline e4ffdffeb4c163597c07a687f315e6c0 https://www.encodeproject.org/files/ENCFF255DCQ/@@download/ENCFF255DCQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF631JWG bigBed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF358MIL 10821248 ENCODE Processing Pipeline e26be20fc52264b4f334b7df70b16db1 https://www.encodeproject.org/files/ENCFF631JWG/@@download/ENCFF631JWG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF313XJY bigBed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF255DCQ 10422509 ENCODE Processing Pipeline 08d8fc3416def9edaa0972cc41ff4c60 https://www.encodeproject.org/files/ENCFF313XJY/@@download/ENCFF313XJY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF407IDB bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF316XFH, ENCFF511XTS, ENCFF798ORT 5426644 ENCODE Processing Pipeline 0ea8ad16380eb3d7ff63e2b640be0b20 https://www.encodeproject.org/files/ENCFF407IDB/@@download/ENCFF407IDB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF176NGG bigBed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF407IDB 11183960 ENCODE Processing Pipeline 1b1ff506caff64c381bee9afee03013b https://www.encodeproject.org/files/ENCFF176NGG/@@download/ENCFF176NGG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF300PAY bed narrowPeak conservative idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF255DCQ, ENCFF358MIL, ENCFF407IDB, ENCFF419RSJ 219594 ENCODE Processing Pipeline 00044cdf1a07bb0558405aabbe5b377b https://www.encodeproject.org/files/ENCFF300PAY/@@download/ENCFF300PAY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF423CTO bed narrowPeak optimal idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF255DCQ, ENCFF358MIL, ENCFF407IDB, ENCFF419RSJ 301234 ENCODE Processing Pipeline eaae94f5dda84be557f60e0d9f8d2b79 https://www.encodeproject.org/files/ENCFF423CTO/@@download/ENCFF423CTO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF217OOK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF423CTO 575032 ENCODE Processing Pipeline 38f8db42116b63022fa5488a1c7dc250 https://www.encodeproject.org/files/ENCFF217OOK/@@download/ENCFF217OOK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF749LZC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF300PAY 459997 ENCODE Processing Pipeline 3b95602e846ad879f4293c38290f9d16 https://www.encodeproject.org/files/ENCFF749LZC/@@download/ENCFF749LZC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF418FMT bigWig signal p-value ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF725UGE, ENCFF916OWO 416599340 ENCODE Processing Pipeline 573bea805d1d6bd1d1a7880e401cd373 https://www.encodeproject.org/files/ENCFF418FMT/@@download/ENCFF418FMT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF550BAV bigWig fold change over control ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF725UGE, ENCFF916OWO 365477934 ENCODE Processing Pipeline 72437d460d815662f6d0034e1c997e56 https://www.encodeproject.org/files/ENCFF550BAV/@@download/ENCFF550BAV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF946LUW bigWig signal p-value ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF185JZF, ENCFF725UGE, ENCFF916OWO 603485162 ENCODE Processing Pipeline 647d52aa31519360d2426fc52f8b61ee https://www.encodeproject.org/files/ENCFF946LUW/@@download/ENCFF946LUW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF503IHC bigWig signal p-value ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF185JZF, ENCFF725UGE 552283480 ENCODE Processing Pipeline 558a296570adfd9f73224e6db5a63384 https://www.encodeproject.org/files/ENCFF503IHC/@@download/ENCFF503IHC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF630DPH bigWig fold change over control ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF185JZF, ENCFF725UGE 327538920 ENCODE Processing Pipeline b99ed745c4d7aa624a181d6756bdb46a https://www.encodeproject.org/files/ENCFF630DPH/@@download/ENCFF630DPH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF141KRK bigWig fold change over control ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF185JZF, ENCFF725UGE, ENCFF916OWO 609089971 ENCODE Processing Pipeline c8d4400a1320885faceecb01b753830b https://www.encodeproject.org/files/ENCFF141KRK/@@download/ENCFF141KRK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF534OBN bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF185JZF, ENCFF725UGE 4994583 ENCODE Processing Pipeline e342cea49f835f1c6541f8e569416001 https://www.encodeproject.org/files/ENCFF534OBN/@@download/ENCFF534OBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF893LMP bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF725UGE, ENCFF916OWO 4034357 ENCODE Processing Pipeline a02fa2ebee5f917703c8f1c8cfa23b2c https://www.encodeproject.org/files/ENCFF893LMP/@@download/ENCFF893LMP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF363MZC bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF185JZF, ENCFF725UGE, ENCFF916OWO 5443998 ENCODE Processing Pipeline 7b6c98a3122a8fad7f027d8f347ad494 https://www.encodeproject.org/files/ENCFF363MZC/@@download/ENCFF363MZC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF033YIU bigBed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF893LMP 10506632 ENCODE Processing Pipeline 31ed2cc6b7c1e858df994522cbf2626c https://www.encodeproject.org/files/ENCFF033YIU/@@download/ENCFF033YIU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF889QMV bigBed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF534OBN 10932133 ENCODE Processing Pipeline 3a9cb7d9ea040bae1b455a4a20c2e285 https://www.encodeproject.org/files/ENCFF889QMV/@@download/ENCFF889QMV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF950OCE bed narrowPeak conservative idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF363MZC, ENCFF534OBN, ENCFF893LMP 221117 ENCODE Processing Pipeline fa6c689e93d1f2aa82d46fe5df8212ce https://www.encodeproject.org/files/ENCFF950OCE/@@download/ENCFF950OCE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF883EGI bed narrowPeak optimal idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF363MZC, ENCFF534OBN, ENCFF893LMP 296975 ENCODE Processing Pipeline a0c63d69cf64140819bd535ff869d781 https://www.encodeproject.org/files/ENCFF883EGI/@@download/ENCFF883EGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF078DBD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF883EGI 569827 ENCODE Processing Pipeline 3c8db2a11dc328dac073192b191c22cc https://www.encodeproject.org/files/ENCFF078DBD/@@download/ENCFF078DBD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF971UWD bigBed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF363MZC 11180675 ENCODE Processing Pipeline a2d0cff5e40fc7f5efc7378dd1a9c167 https://www.encodeproject.org/files/ENCFF971UWD/@@download/ENCFF971UWD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF591NTQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF950OCE 461258 ENCODE Processing Pipeline 05826f3b31a175511beb7d44b372f4be https://www.encodeproject.org/files/ENCFF591NTQ/@@download/ENCFF591NTQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF323VNN fastq reads ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 1 100 paired-ended 2 ENCFF885ZFG 2051470517 Michael Snyder, Stanford 2a53780c8e7ac592099bd6cf5e801556 https://www.encodeproject.org/files/ENCFF323VNN/@@download/ENCFF323VNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF890FRG fastq reads ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 1 100 paired-ended 2 ENCFF121HAM 2511010664 Michael Snyder, Stanford 4fbd2e4e8be49508b46328cf96e28b4c SRA:SRR6212859 https://www.encodeproject.org/files/ENCFF890FRG/@@download/ENCFF890FRG.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF885ZFG fastq reads ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 1 100 paired-ended 1 ENCFF323VNN 1952219817 Michael Snyder, Stanford 846deb0eb5447f4dab3456da8db5f20a https://www.encodeproject.org/files/ENCFF885ZFG/@@download/ENCFF885ZFG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF121HAM fastq reads ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 1 100 paired-ended 1 ENCFF890FRG 2251644149 Michael Snyder, Stanford ec886a521b10fd56341039d81ca137b3 SRA:SRR6212859 https://www.encodeproject.org/files/ENCFF121HAM/@@download/ENCFF121HAM.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF308CZX fastq reads ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 1 100 paired-ended 1 ENCFF786NXV 5060250003 Michael Snyder, Stanford cf605dca633ffef4a0d938ccc6eecb5a SRA:SRR6212858 https://www.encodeproject.org/files/ENCFF308CZX/@@download/ENCFF308CZX.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF786NXV fastq reads ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 1 100 paired-ended 2 ENCFF308CZX 5806759110 Michael Snyder, Stanford 1e6c0430b58716d689cfae59270dad1f SRA:SRR6212858 https://www.encodeproject.org/files/ENCFF786NXV/@@download/ENCFF786NXV.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF480PKB bam unfiltered alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 100 ENCFF121HAM, ENCFF643CGH, ENCFF890FRG 4653106349 ENCODE Processing Pipeline 27f1e92c456d609fb3e9823008763755 https://www.encodeproject.org/files/ENCFF480PKB/@@download/ENCFF480PKB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF303ICH bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 100 ENCFF121HAM, ENCFF643CGH, ENCFF890FRG 3261635285 ENCODE Processing Pipeline fc0a6acf42e743fe899246a015e5b42a https://www.encodeproject.org/files/ENCFF303ICH/@@download/ENCFF303ICH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF611FON bam unfiltered alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 100 ENCFF308CZX, ENCFF643CGH, ENCFF786NXV 9824605267 ENCODE Processing Pipeline 268c344cf9855350f1af9807c5fc73c3 https://www.encodeproject.org/files/ENCFF611FON/@@download/ENCFF611FON.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF041ZVD bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 100 ENCFF308CZX, ENCFF643CGH, ENCFF786NXV 5821059847 ENCODE Processing Pipeline 974920a13b6d0f209b21a1e326edbb5b https://www.encodeproject.org/files/ENCFF041ZVD/@@download/ENCFF041ZVD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF404KVW bigWig signal p-value ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF041ZVD, ENCFF712WXB, ENCFF790TAN 2056627105 ENCODE Processing Pipeline e7048028622cf93aab294631ea74c4a1 https://www.encodeproject.org/files/ENCFF404KVW/@@download/ENCFF404KVW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF234MUB bigWig signal p-value ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF303ICH, ENCFF790TAN 1115751982 ENCODE Processing Pipeline 1ef5718f8688266f5fc70b96849af7cf https://www.encodeproject.org/files/ENCFF234MUB/@@download/ENCFF234MUB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF941EFJ bigWig signal p-value ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF041ZVD, ENCFF303ICH, ENCFF712WXB, ENCFF790TAN 2252991471 ENCODE Processing Pipeline 41a917d529368fdb006fad91c79c5716 https://www.encodeproject.org/files/ENCFF941EFJ/@@download/ENCFF941EFJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF417OVB bigWig fold change over control ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF303ICH, ENCFF790TAN 1164607093 ENCODE Processing Pipeline 2419c0bf4352cfb32c085db4163925ea https://www.encodeproject.org/files/ENCFF417OVB/@@download/ENCFF417OVB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF353KBC bigWig fold change over control ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF041ZVD, ENCFF712WXB, ENCFF790TAN 2107335303 ENCODE Processing Pipeline 2209af47c4ff95d55406eb524862065e https://www.encodeproject.org/files/ENCFF353KBC/@@download/ENCFF353KBC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF404USP bigWig fold change over control ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF041ZVD, ENCFF303ICH, ENCFF712WXB, ENCFF790TAN 2442864008 ENCODE Processing Pipeline 1b5168e28daeaee8eed193f351863ed1 https://www.encodeproject.org/files/ENCFF404USP/@@download/ENCFF404USP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF736FJB bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF303ICH, ENCFF790TAN 6433481 ENCODE Processing Pipeline 2ca863a87d807fbd9e97da4974aad0d3 https://www.encodeproject.org/files/ENCFF736FJB/@@download/ENCFF736FJB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF474QPI bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF041ZVD, ENCFF712WXB, ENCFF790TAN 7213523 ENCODE Processing Pipeline 7b0594e4834f351cf66ad388685b2009 https://www.encodeproject.org/files/ENCFF474QPI/@@download/ENCFF474QPI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF526QZM bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF041ZVD, ENCFF303ICH, ENCFF712WXB, ENCFF790TAN 7253737 ENCODE Processing Pipeline 8c31af33e79e54eecf1ba0ea1a5120eb https://www.encodeproject.org/files/ENCFF526QZM/@@download/ENCFF526QZM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF432JDG bigBed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF736FJB 11016885 ENCODE Processing Pipeline c88d860be0d33b056f4d7c3d51a1faf0 https://www.encodeproject.org/files/ENCFF432JDG/@@download/ENCFF432JDG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF004DGN bigBed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF474QPI 13357750 ENCODE Processing Pipeline ae5bd09105089742ddf3a92dbbfa2882 https://www.encodeproject.org/files/ENCFF004DGN/@@download/ENCFF004DGN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF866XJL bigBed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF526QZM 13319303 ENCODE Processing Pipeline e9df9995ef35f9fbc7df1bb72aa6226f https://www.encodeproject.org/files/ENCFF866XJL/@@download/ENCFF866XJL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF164NRV bigBed narrowPeak conservative idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF647FMI 507705 ENCODE Processing Pipeline a4563b87fd4a8e7e895baa38d14780e4 https://www.encodeproject.org/files/ENCFF164NRV/@@download/ENCFF164NRV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF056SEM bed narrowPeak optimal idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF419RSJ, ENCFF474QPI, ENCFF526QZM, ENCFF736FJB 354148 ENCODE Processing Pipeline fe638884c76bb59409ba977becdde421 https://www.encodeproject.org/files/ENCFF056SEM/@@download/ENCFF056SEM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF647FMI bed narrowPeak conservative idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF419RSJ, ENCFF474QPI, ENCFF526QZM, ENCFF736FJB 245187 ENCODE Processing Pipeline 9ccf94bf33c47c7a7ed30f886253b7dd https://www.encodeproject.org/files/ENCFF647FMI/@@download/ENCFF647FMI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF051THH bigBed narrowPeak optimal idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF056SEM 660258 ENCODE Processing Pipeline a5ada372da452d80fdb170c06912cfe7 https://www.encodeproject.org/files/ENCFF051THH/@@download/ENCFF051THH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF528PQL bam unfiltered alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 100 ENCFF121HAM, ENCFF807MUK, ENCFF890FRG 4647545962 ENCODE Processing Pipeline eb5ca8f2287ce63cabc18d8f8dc6dc0e https://www.encodeproject.org/files/ENCFF528PQL/@@download/ENCFF528PQL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF775NNT bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 100 ENCFF121HAM, ENCFF807MUK, ENCFF890FRG 3258855889 ENCODE Processing Pipeline 58e69a2e66b3aec2628895f6625c7d5d https://www.encodeproject.org/files/ENCFF775NNT/@@download/ENCFF775NNT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF824KYH bam unfiltered alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 100 ENCFF308CZX, ENCFF786NXV, ENCFF807MUK 9824167823 ENCODE Processing Pipeline 1838bd6347aa9971b65c33c7ded74b26 https://www.encodeproject.org/files/ENCFF824KYH/@@download/ENCFF824KYH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF006RYF bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 100 ENCFF308CZX, ENCFF786NXV, ENCFF807MUK 5814668806 ENCODE Processing Pipeline 3da2d7fa815de7dc0c7c46e2ad4f53ec https://www.encodeproject.org/files/ENCFF006RYF/@@download/ENCFF006RYF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF169JAV bigWig signal p-value ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF160VXC, ENCFF775NNT 943128994 ENCODE Processing Pipeline c9a4ce0348bba6fb352709185b929e7b https://www.encodeproject.org/files/ENCFF169JAV/@@download/ENCFF169JAV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF094TXE bigWig signal p-value ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF006RYF, ENCFF160VXC, ENCFF775NNT, ENCFF834TUP 1817204106 ENCODE Processing Pipeline d9705d26e18e6c8317584fb8de866dc5 https://www.encodeproject.org/files/ENCFF094TXE/@@download/ENCFF094TXE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF410ZSL bigWig fold change over control ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF006RYF, ENCFF160VXC, ENCFF834TUP 2088792273 ENCODE Processing Pipeline c227f6901d3114b64604543ecf5dab42 https://www.encodeproject.org/files/ENCFF410ZSL/@@download/ENCFF410ZSL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF165WIL bigWig fold change over control ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF160VXC, ENCFF775NNT 1205572010 ENCODE Processing Pipeline 8bfba05b3f8a80e2b4d4d333b636821a https://www.encodeproject.org/files/ENCFF165WIL/@@download/ENCFF165WIL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF621GAB bigWig signal p-value ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF006RYF, ENCFF160VXC, ENCFF834TUP 1775378685 ENCODE Processing Pipeline b5c8d0dc24bc8bb6f4e03b8547a761de https://www.encodeproject.org/files/ENCFF621GAB/@@download/ENCFF621GAB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF849RXO bigWig fold change over control ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF006RYF, ENCFF160VXC, ENCFF775NNT, ENCFF834TUP 2427847870 ENCODE Processing Pipeline 4a441ce2cad56d895698610e3c9e56ca https://www.encodeproject.org/files/ENCFF849RXO/@@download/ENCFF849RXO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF098CHB bed narrowPeak conservative idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF001TDO, ENCFF488HLT, ENCFF802QKE, ENCFF885FEE 249662 ENCODE Processing Pipeline 32f38829bbb74b6c543124dc7940b1b9 https://www.encodeproject.org/files/ENCFF098CHB/@@download/ENCFF098CHB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF778NEV bigBed narrowPeak conservative idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF098CHB 511401 ENCODE Processing Pipeline a1bc2eea7110543fb1fe77ba3ce39d0e https://www.encodeproject.org/files/ENCFF778NEV/@@download/ENCFF778NEV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF442ZUF bed narrowPeak optimal idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF001TDO, ENCFF488HLT, ENCFF802QKE, ENCFF885FEE 351602 ENCODE Processing Pipeline 1fc04f16ea66c9af37a0b919f6ec5ebc https://www.encodeproject.org/files/ENCFF442ZUF/@@download/ENCFF442ZUF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF883CUH bigBed narrowPeak optimal idr thresholded peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF442ZUF 653759 ENCODE Processing Pipeline ec19b3d06a6fa05c5fb6873abb557c3d https://www.encodeproject.org/files/ENCFF883CUH/@@download/ENCFF883CUH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF274YKX bigBed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF802QKE 13371966 ENCODE Processing Pipeline 02fe7ce4804790eb8f89573981da2f30 https://www.encodeproject.org/files/ENCFF274YKX/@@download/ENCFF274YKX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF488HLT bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF160VXC, ENCFF775NNT 6425855 ENCODE Processing Pipeline a3be0c0dbff51a7c107cd61844718d65 https://www.encodeproject.org/files/ENCFF488HLT/@@download/ENCFF488HLT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF885FEE bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF006RYF, ENCFF160VXC, ENCFF775NNT, ENCFF834TUP 7262615 ENCODE Processing Pipeline 9bb34a953d7821d9ed2340e5cdb44c03 https://www.encodeproject.org/files/ENCFF885FEE/@@download/ENCFF885FEE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF802QKE bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF006RYF, ENCFF160VXC, ENCFF834TUP 7232749 ENCODE Processing Pipeline c28c2556c0125c990ca144d7b2d07d0e https://www.encodeproject.org/files/ENCFF802QKE/@@download/ENCFF802QKE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF496UUC bigBed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF488HLT 11001637 ENCODE Processing Pipeline dbad65c97e7694c3c1a079e7fd190bbd https://www.encodeproject.org/files/ENCFF496UUC/@@download/ENCFF496UUC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF948BSJ bigBed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1, 2 ENCFF885FEE 13310357 ENCODE Processing Pipeline 360f85099724265dcb1ae04bc331ecbb https://www.encodeproject.org/files/ENCFF948BSJ/@@download/ENCFF948BSJ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF403KYW bam unfiltered alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 100 ENCFF354BWI, ENCFF464SOW, ENCFF807MUK 5709100619 ENCODE Processing Pipeline aa2b7f1c6d9a583ab265954bbd3d852a https://www.encodeproject.org/files/ENCFF403KYW/@@download/ENCFF403KYW.bam hg19 released duplicate lane review ENCFF785CCG bam unfiltered alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 100 ENCFF326JSE, ENCFF359EHT, ENCFF807MUK 7860912941 ENCODE Processing Pipeline afc7e34d76fc05eb14628318231d8356 https://www.encodeproject.org/files/ENCFF785CCG/@@download/ENCFF785CCG.bam hg19 released duplicate lane review ENCFF464SOW fastq reads ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 1 ENCFF354BWI 2588571077 Michael Snyder, Stanford c6e78ff4ff52a434bba9c0324a622ca4 SRA:SRR6213863 https://www.encodeproject.org/files/ENCFF464SOW/@@download/ENCFF464SOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released duplicate lane review ENCFF326JSE fastq reads ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 1 100 paired-ended 1 ENCFF359EHT 3667700163 Michael Snyder, Stanford 483e0974aa03b88bc68fe14b6d02251c SRA:SRR6213862 https://www.encodeproject.org/files/ENCFF326JSE/@@download/ENCFF326JSE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released duplicate lane review ENCFF359EHT fastq reads ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 1 100 paired-ended 2 ENCFF326JSE 3823815934 Michael Snyder, Stanford 0d08aa2b371c7c4faa9b48771db7159e SRA:SRR6213862 https://www.encodeproject.org/files/ENCFF359EHT/@@download/ENCFF359EHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released duplicate lane review ENCFF354BWI fastq reads ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 1 100 paired-ended 2 ENCFF464SOW 2660354796 Michael Snyder, Stanford f7764330b3466a3708728455336931de SRA:SRR6213863 https://www.encodeproject.org/files/ENCFF354BWI/@@download/ENCFF354BWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released duplicate lane review ENCFF689SLU bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 100 ENCFF354BWI, ENCFF464SOW, ENCFF807MUK 5143620677 ENCODE Processing Pipeline b1c26cfea6d9af8a8bf3f0d6b5e88a93 https://www.encodeproject.org/files/ENCFF689SLU/@@download/ENCFF689SLU.bam hg19 released duplicate lane review ENCFF368MQN bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 100 ENCFF326JSE, ENCFF359EHT, ENCFF807MUK 6566968799 ENCODE Processing Pipeline 7765885cd8101a505d432aaac5e60bdb https://www.encodeproject.org/files/ENCFF368MQN/@@download/ENCFF368MQN.bam hg19 released duplicate lane review ENCFF419PYB bigWig signal p-value ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF049MPQ, ENCFF368MQN, ENCFF583FAG, ENCFF689SLU 2212676228 ENCODE Processing Pipeline 9996fdf786080821f56099f8ccf98a04 https://www.encodeproject.org/files/ENCFF419PYB/@@download/ENCFF419PYB.bigWig hg19 released duplicate lane review ENCFF185VWZ bigWig fold change over control ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF049MPQ, ENCFF368MQN, ENCFF583FAG, ENCFF689SLU 2316830772 ENCODE Processing Pipeline 965ec439a06f18e4af10ccc2517c2700 https://www.encodeproject.org/files/ENCFF185VWZ/@@download/ENCFF185VWZ.bigWig hg19 released duplicate lane review ENCFF560DJL bam unfiltered alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 100 ENCFF354BWI, ENCFF464SOW, ENCFF643CGH 5720908754 ENCODE Processing Pipeline f8dbabac0f56e3cad6c148a11f858762 https://www.encodeproject.org/files/ENCFF560DJL/@@download/ENCFF560DJL.bam GRCh38 released duplicate lane review ENCFF697ZCU bam unfiltered alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 100 ENCFF326JSE, ENCFF359EHT, ENCFF643CGH 7873816391 ENCODE Processing Pipeline f1f13222911ad72366bfff8b83810994 https://www.encodeproject.org/files/ENCFF697ZCU/@@download/ENCFF697ZCU.bam GRCh38 released duplicate lane review ENCFF805LSA bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 100 ENCFF354BWI, ENCFF464SOW, ENCFF643CGH 5147427656 ENCODE Processing Pipeline 9f84058385f90fde736e8f7bc3fa4be7 https://www.encodeproject.org/files/ENCFF805LSA/@@download/ENCFF805LSA.bam GRCh38 released duplicate lane review ENCFF530DVX bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 100 ENCFF326JSE, ENCFF359EHT, ENCFF643CGH 6573755228 ENCODE Processing Pipeline a3c659d9107fa696eb6c6ddfdc0d8e08 https://www.encodeproject.org/files/ENCFF530DVX/@@download/ENCFF530DVX.bam GRCh38 released duplicate lane review ENCFF250RPS bigWig signal p-value ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF426RDP, ENCFF805LSA 1007660142 ENCODE Processing Pipeline 89c4de103c8b947a5f2820c477f06bb7 https://www.encodeproject.org/files/ENCFF250RPS/@@download/ENCFF250RPS.bigWig GRCh38 released duplicate lane review ENCFF050ZFM bigWig signal p-value ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF530DVX 1724571956 ENCODE Processing Pipeline 5d0c59bbf9a626278be6b9845759e35d https://www.encodeproject.org/files/ENCFF050ZFM/@@download/ENCFF050ZFM.bigWig GRCh38 released duplicate lane review ENCFF174XVH bigWig signal p-value ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF291AFY, ENCFF426RDP, ENCFF530DVX, ENCFF805LSA 2217237942 ENCODE Processing Pipeline 0e3f47d373df8a7ef390aab00e842e17 https://www.encodeproject.org/files/ENCFF174XVH/@@download/ENCFF174XVH.bigWig GRCh38 released duplicate lane review ENCFF490HEP bigWig fold change over control ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF426RDP, ENCFF805LSA 1235968190 ENCODE Processing Pipeline 451433498f493fc535b758632acfd102 https://www.encodeproject.org/files/ENCFF490HEP/@@download/ENCFF490HEP.bigWig GRCh38 released duplicate lane review ENCFF893EFT bigWig fold change over control ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF530DVX 1801258882 ENCODE Processing Pipeline b008956b4f769853b3e4c3b83bf74b8d https://www.encodeproject.org/files/ENCFF893EFT/@@download/ENCFF893EFT.bigWig GRCh38 released duplicate lane review ENCFF160WPD bigWig fold change over control ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF291AFY, ENCFF426RDP, ENCFF530DVX, ENCFF805LSA 2317384818 ENCODE Processing Pipeline 784c238ee39136edb0d2ba59cdc604bb https://www.encodeproject.org/files/ENCFF160WPD/@@download/ENCFF160WPD.bigWig GRCh38 released duplicate lane review ENCFF458JNP bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF426RDP, ENCFF805LSA 6830691 ENCODE Processing Pipeline 116b5435c8616ca57813c0de5f32e877 https://www.encodeproject.org/files/ENCFF458JNP/@@download/ENCFF458JNP.bed.gz GRCh38 released duplicate lane review ENCFF957FNM bigBed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF458JNP 13489075 ENCODE Processing Pipeline 4d0be16b9ae295b38dc142d790bd0ea0 https://www.encodeproject.org/files/ENCFF957FNM/@@download/ENCFF957FNM.bigBed GRCh38 released duplicate lane review ENCFF888RBY bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF291AFY, ENCFF426RDP, ENCFF530DVX, ENCFF805LSA 7166647 ENCODE Processing Pipeline f1549f7377fe82997201a6e758e57426 https://www.encodeproject.org/files/ENCFF888RBY/@@download/ENCFF888RBY.bed.gz GRCh38 released duplicate lane review ENCFF673PVH bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF530DVX 6936801 ENCODE Processing Pipeline c18439fb35b747fb7a16a0fbc0d9e270 https://www.encodeproject.org/files/ENCFF673PVH/@@download/ENCFF673PVH.bed.gz GRCh38 released duplicate lane review ENCFF234YXL bigBed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF888RBY 11629574 ENCODE Processing Pipeline a07408bfa4cba9c6fd5564486744e383 https://www.encodeproject.org/files/ENCFF234YXL/@@download/ENCFF234YXL.bigBed GRCh38 released duplicate lane review ENCFF456DLB bigBed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF673PVH 11833736 ENCODE Processing Pipeline d6034e2b78f93eabcd0e5244ebcce842 https://www.encodeproject.org/files/ENCFF456DLB/@@download/ENCFF456DLB.bigBed GRCh38 released duplicate lane review ENCFF890YVJ bed narrowPeak conservative idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF419RSJ, ENCFF458JNP, ENCFF673PVH, ENCFF888RBY 864656 ENCODE Processing Pipeline 1719fd56d5544b3c3085873573ce3146 https://www.encodeproject.org/files/ENCFF890YVJ/@@download/ENCFF890YVJ.bed.gz GRCh38 released duplicate lane review ENCFF220ZQF bigBed narrowPeak conservative idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF890YVJ 1828603 ENCODE Processing Pipeline 4e267795f62fffc77ed9c3fe202a94c5 https://www.encodeproject.org/files/ENCFF220ZQF/@@download/ENCFF220ZQF.bigBed GRCh38 released duplicate lane review ENCFF732LJO bigBed narrowPeak optimal idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF170POB 2182494 ENCODE Processing Pipeline 644391e057523ef0e538c25ab2eb3757 https://www.encodeproject.org/files/ENCFF732LJO/@@download/ENCFF732LJO.bigBed GRCh38 released duplicate lane review ENCFF170POB bed narrowPeak optimal idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF419RSJ, ENCFF458JNP, ENCFF673PVH, ENCFF888RBY 1088219 ENCODE Processing Pipeline baa4cb6d2c9d8677ccdb478e5d87a609 https://www.encodeproject.org/files/ENCFF170POB/@@download/ENCFF170POB.bed.gz GRCh38 released duplicate lane review ENCFF397ZDJ bigBed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF124QJZ 14152174 ENCODE Processing Pipeline cff8e8e300992b17e6d8cd50ee017503 https://www.encodeproject.org/files/ENCFF397ZDJ/@@download/ENCFF397ZDJ.bigBed hg19 released duplicate lane review ENCFF132BIF bigBed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF540SXF 11926785 ENCODE Processing Pipeline 171a4baf558c39d97aa672976d0fa926 https://www.encodeproject.org/files/ENCFF132BIF/@@download/ENCFF132BIF.bigBed hg19 released duplicate lane review ENCFF965AIZ bed narrowPeak optimal idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF001TDO, ENCFF124QJZ, ENCFF540SXF, ENCFF834BCC 1138063 ENCODE Processing Pipeline 23514fe2f2689d4cb62e6fe4fc279273 https://www.encodeproject.org/files/ENCFF965AIZ/@@download/ENCFF965AIZ.bed.gz hg19 released duplicate lane review ENCFF097HJB bigWig signal p-value ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF049MPQ, ENCFF368MQN, ENCFF583FAG 1502518389 ENCODE Processing Pipeline a63c3eac721341d4354e40aaef0c9f80 https://www.encodeproject.org/files/ENCFF097HJB/@@download/ENCFF097HJB.bigWig hg19 released duplicate lane review ENCFF834BCC bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF583FAG, ENCFF689SLU 6839779 ENCODE Processing Pipeline 450cde9be37115459b7430067e0bb0f7 https://www.encodeproject.org/files/ENCFF834BCC/@@download/ENCFF834BCC.bed.gz hg19 released duplicate lane review ENCFF538VTB bigBed narrowPeak conservative idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF663JQC 1897722 ENCODE Processing Pipeline c88de8fb2e87a2610e1721a1bf5d7fce https://www.encodeproject.org/files/ENCFF538VTB/@@download/ENCFF538VTB.bigBed hg19 released duplicate lane review ENCFF540SXF bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF049MPQ, ENCFF368MQN, ENCFF583FAG 7028129 ENCODE Processing Pipeline 1cda71038095d3810a89b552edaf71ea https://www.encodeproject.org/files/ENCFF540SXF/@@download/ENCFF540SXF.bed.gz hg19 released duplicate lane review ENCFF124QJZ bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF049MPQ, ENCFF368MQN, ENCFF583FAG, ENCFF689SLU 7302620 ENCODE Processing Pipeline 228b172466525f319f673014e1970eca https://www.encodeproject.org/files/ENCFF124QJZ/@@download/ENCFF124QJZ.bed.gz hg19 released duplicate lane review ENCFF467TXZ bigBed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF834BCC 13487917 ENCODE Processing Pipeline e4fc0e2fb733959c2e0e3a05478b9303 https://www.encodeproject.org/files/ENCFF467TXZ/@@download/ENCFF467TXZ.bigBed hg19 released duplicate lane review ENCFF950XOS bigWig signal p-value ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF583FAG, ENCFF689SLU 1104735078 ENCODE Processing Pipeline 13f2b98c438e2eefea26e2b139d739bd https://www.encodeproject.org/files/ENCFF950XOS/@@download/ENCFF950XOS.bigWig hg19 released duplicate lane review ENCFF936JHA bigWig fold change over control ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF583FAG, ENCFF689SLU 1234920745 ENCODE Processing Pipeline c1fbbc35c6dd70297e73af9da4193c5e https://www.encodeproject.org/files/ENCFF936JHA/@@download/ENCFF936JHA.bigWig hg19 released duplicate lane review ENCFF279XPX bigWig fold change over control ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 ENCFF049MPQ, ENCFF368MQN, ENCFF583FAG 1798935631 ENCODE Processing Pipeline 4f25b8a6df896ea04dfb54f603efeab5 https://www.encodeproject.org/files/ENCFF279XPX/@@download/ENCFF279XPX.bigWig hg19 released duplicate lane review ENCFF663JQC bed narrowPeak conservative idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF001TDO, ENCFF124QJZ, ENCFF540SXF, ENCFF834BCC 910122 ENCODE Processing Pipeline 063de747d3220b30f9e0759384240117 https://www.encodeproject.org/files/ENCFF663JQC/@@download/ENCFF663JQC.bed.gz hg19 released duplicate lane review ENCFF345JQL bigBed narrowPeak optimal idr thresholded peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 3 ENCFF965AIZ 2258456 ENCODE Processing Pipeline 0ec76f938a3c519c39a1ae20c6daa0d0 https://www.encodeproject.org/files/ENCFF345JQL/@@download/ENCFF345JQL.bigBed hg19 released duplicate lane review ENCFF269TWX bam unfiltered alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELS, ENCFF002ELV, ENCFF807MUK 6552153640 ENCODE Processing Pipeline 325fac9f50e382d007f50de9220946d6 https://www.encodeproject.org/files/ENCFF269TWX/@@download/ENCFF269TWX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF002ELS fastq reads ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002ELV 3278706780 Michael Snyder, Stanford c8424389d1a65e4801f0f26f83f3aa37 https://www.encodeproject.org/files/ENCFF002ELS/@@download/ENCFF002ELS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF002ELT fastq reads ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002ELU 3414239841 Michael Snyder, Stanford ceabb9a071f044b82c25fd999196fa29 https://www.encodeproject.org/files/ENCFF002ELT/@@download/ENCFF002ELT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF002ELU fastq reads ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002ELT 3402820381 Michael Snyder, Stanford 2604cd5f621db37513ec2d11c2d2d8d3 https://www.encodeproject.org/files/ENCFF002ELU/@@download/ENCFF002ELU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF002ELV fastq reads ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002ELS 3257505601 Michael Snyder, Stanford 4a3e358d9334a2c05dce90b31c7f2a21 https://www.encodeproject.org/files/ENCFF002ELV/@@download/ENCFF002ELV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF927NKH bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF002ELS, ENCFF002ELV, ENCFF807MUK 4251010962 ENCODE Processing Pipeline f5d64394378d504409e569b3608c3704 https://www.encodeproject.org/files/ENCFF927NKH/@@download/ENCFF927NKH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF456LRP fastq reads ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 1 ENCFF357WIZ 2184153176 Michael Snyder, Stanford 3ff69038dd0daaef35a090f21b1c2b20 https://www.encodeproject.org/files/ENCFF456LRP/@@download/ENCFF456LRP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF357WIZ fastq reads ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 2 ENCFF456LRP 2172063879 Michael Snyder, Stanford 9bcb2472fe3973803cd62d2a86fa8a03 https://www.encodeproject.org/files/ENCFF357WIZ/@@download/ENCFF357WIZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF644WZX bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELS, ENCFF002ELV, ENCFF643CGH 4253881940 ENCODE Processing Pipeline 26c308bb588f610518e79d84529085d6 https://www.encodeproject.org/files/ENCFF644WZX/@@download/ENCFF644WZX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF144KQA bam unfiltered alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELT, ENCFF002ELU, ENCFF357WIZ, ENCFF456LRP, ENCFF643CGH 10034785197 ENCODE Processing Pipeline 62687089b783538e1b63432d240e392b https://www.encodeproject.org/files/ENCFF144KQA/@@download/ENCFF144KQA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF475UEM bam unfiltered alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELT, ENCFF002ELU, ENCFF357WIZ, ENCFF456LRP, ENCFF807MUK 10039591200 ENCODE Processing Pipeline d681ee793548de16d8b7130b05eeddad https://www.encodeproject.org/files/ENCFF475UEM/@@download/ENCFF475UEM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF577YCP bam unfiltered alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELS, ENCFF002ELV, ENCFF643CGH 6552294246 ENCODE Processing Pipeline 4cc524aea8fed4c8c05317a33eb54a64 https://www.encodeproject.org/files/ENCFF577YCP/@@download/ENCFF577YCP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF105FME bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELT, ENCFF002ELU, ENCFF357WIZ, ENCFF456LRP, ENCFF807MUK 5042931969 ENCODE Processing Pipeline 70b5574543b12899df6e126a5a6f71f8 https://www.encodeproject.org/files/ENCFF105FME/@@download/ENCFF105FME.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF447TQI bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELT, ENCFF002ELU, ENCFF357WIZ, ENCFF456LRP, ENCFF643CGH 5046625148 ENCODE Processing Pipeline 6a8600338088e24817aa6b028eda44ee https://www.encodeproject.org/files/ENCFF447TQI/@@download/ENCFF447TQI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF477GGK bigWig signal p-value ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF105FME, ENCFF980CFV 1863819910 ENCODE Processing Pipeline f514a3ff0201cb642a770baa41c5eb13 https://www.encodeproject.org/files/ENCFF477GGK/@@download/ENCFF477GGK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF091TAB bigWig fold change over control ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF105FME, ENCFF927NKH, ENCFF980CFV 2279229928 ENCODE Processing Pipeline 8da59a03814adbc8ef6b1c19cda562ac https://www.encodeproject.org/files/ENCFF091TAB/@@download/ENCFF091TAB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF322CDD bigWig fold change over control ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF105FME, ENCFF980CFV 1810310796 ENCODE Processing Pipeline ffc84e704c0f3498522721f4ed01d35c https://www.encodeproject.org/files/ENCFF322CDD/@@download/ENCFF322CDD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF011SAL bigWig signal p-value ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF927NKH, ENCFF980CFV 1673139093 ENCODE Processing Pipeline 58a54f2e6f06406296e402b707811414 https://www.encodeproject.org/files/ENCFF011SAL/@@download/ENCFF011SAL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF259JGD bigWig signal p-value ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF105FME, ENCFF927NKH, ENCFF980CFV 2004043114 ENCODE Processing Pipeline 7559f09c87bf840ca71f1b481075b745 https://www.encodeproject.org/files/ENCFF259JGD/@@download/ENCFF259JGD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF170NWR bigWig fold change over control ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF927NKH, ENCFF980CFV 1685143194 ENCODE Processing Pipeline 85f51a51edc5a0b37fc25f686484ffe4 https://www.encodeproject.org/files/ENCFF170NWR/@@download/ENCFF170NWR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF040TAT bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF105FME, ENCFF927NKH, ENCFF980CFV 7160677 ENCODE Processing Pipeline 0d7628456447369da16db0d1d024447e https://www.encodeproject.org/files/ENCFF040TAT/@@download/ENCFF040TAT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF177BOB bigBed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF067FOD 13660681 ENCODE Processing Pipeline 5395239112f43a9ff67f30c6f3fc5e56 https://www.encodeproject.org/files/ENCFF177BOB/@@download/ENCFF177BOB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF067FOD bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF105FME, ENCFF980CFV 6991836 ENCODE Processing Pipeline 15b08a64f29cd4b9744c49798726dfa8 https://www.encodeproject.org/files/ENCFF067FOD/@@download/ENCFF067FOD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF064CVZ bigBed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF975MKK 13356964 ENCODE Processing Pipeline 759397adc2346ef8dbef9a502e83efa1 https://www.encodeproject.org/files/ENCFF064CVZ/@@download/ENCFF064CVZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF975MKK bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF927NKH, ENCFF980CFV 6911124 ENCODE Processing Pipeline 3891d0f8ae8e4448f82ee4aaa08694b8 https://www.encodeproject.org/files/ENCFF975MKK/@@download/ENCFF975MKK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF582SHF bed narrowPeak optimal idr thresholded peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF040TAT, ENCFF067FOD, ENCFF975MKK 902257 ENCODE Processing Pipeline 1913e84f8d444712f5c7cb57f2ee697a https://www.encodeproject.org/files/ENCFF582SHF/@@download/ENCFF582SHF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF377BNE bigBed narrowPeak optimal idr thresholded peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF582SHF 1690338 ENCODE Processing Pipeline 198ccf1827bff63dacd550056319b799 https://www.encodeproject.org/files/ENCFF377BNE/@@download/ENCFF377BNE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF326WIQ bigBed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF040TAT 13449038 ENCODE Processing Pipeline d8d2300fe338f4abba399ac11b452aa5 https://www.encodeproject.org/files/ENCFF326WIQ/@@download/ENCFF326WIQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF126WYH bigWig signal p-value ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF396QTX, ENCFF447TQI 1667132907 ENCODE Processing Pipeline 4a288546e55d88663123a85f45f9c7a9 https://www.encodeproject.org/files/ENCFF126WYH/@@download/ENCFF126WYH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF143TWO bigWig fold change over control ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF396QTX, ENCFF447TQI 1816766251 ENCODE Processing Pipeline 9cecdffe6e592ae372c206ced2cbeb44 https://www.encodeproject.org/files/ENCFF143TWO/@@download/ENCFF143TWO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF574HRM bigWig signal p-value ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF644WZX 1648232039 ENCODE Processing Pipeline d9d468bb7706277d94562f7afcfa4cd0 https://www.encodeproject.org/files/ENCFF574HRM/@@download/ENCFF574HRM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF814TNC bigWig fold change over control ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF644WZX 1676397100 ENCODE Processing Pipeline adc784696423188ed1f81dc1f4a2720b https://www.encodeproject.org/files/ENCFF814TNC/@@download/ENCFF814TNC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF205NKG bigWig signal p-value ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF396QTX, ENCFF447TQI, ENCFF644WZX 1798316828 ENCODE Processing Pipeline 33678a8dacf15e08bfa29a9a34343fd4 https://www.encodeproject.org/files/ENCFF205NKG/@@download/ENCFF205NKG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF740CAO bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF396QTX, ENCFF447TQI 6990138 ENCODE Processing Pipeline 5f9b0c141f2251cbcfaef467f0448468 https://www.encodeproject.org/files/ENCFF740CAO/@@download/ENCFF740CAO.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF371UZG bigBed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF740CAO 13667528 ENCODE Processing Pipeline 689f32f5cc5cd9b1dcd3dab45088c6b5 https://www.encodeproject.org/files/ENCFF371UZG/@@download/ENCFF371UZG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF188BZN bigBed narrowPeak optimal idr thresholded peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF944KJO 1678185 ENCODE Processing Pipeline efc267d8078f0f5238a392b7f036949a https://www.encodeproject.org/files/ENCFF188BZN/@@download/ENCFF188BZN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF938GRJ bigWig fold change over control ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF396QTX, ENCFF447TQI, ENCFF644WZX 2304244027 ENCODE Processing Pipeline 358efaf19699baf0c8970f54d2a03cd8 https://www.encodeproject.org/files/ENCFF938GRJ/@@download/ENCFF938GRJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF072YWX bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF644WZX 6856605 ENCODE Processing Pipeline 57e5d2a9ebaa747c451612c826cc39a8 https://www.encodeproject.org/files/ENCFF072YWX/@@download/ENCFF072YWX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF130UAY bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF396QTX, ENCFF447TQI, ENCFF644WZX 7138683 ENCODE Processing Pipeline d67b340819f8c6681ed03967e8a18db1 https://www.encodeproject.org/files/ENCFF130UAY/@@download/ENCFF130UAY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF061DFE bigBed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF072YWX 13298502 ENCODE Processing Pipeline 4adf84a0f06b7a0daf756b0f35cf8026 https://www.encodeproject.org/files/ENCFF061DFE/@@download/ENCFF061DFE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF603QEC bigBed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF130UAY 13431644 ENCODE Processing Pipeline d7fa544519e725e2ea275dd939c45daf https://www.encodeproject.org/files/ENCFF603QEC/@@download/ENCFF603QEC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF944KJO bed narrowPeak optimal idr thresholded peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF072YWX, ENCFF130UAY, ENCFF419RSJ, ENCFF740CAO 894395 ENCODE Processing Pipeline 1929e4397433e935276aa4377bdee0e9 https://www.encodeproject.org/files/ENCFF944KJO/@@download/ENCFF944KJO.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF000OZT bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PAI 1464010375 Richard Myers, HAIB c4931758f516c1d8467a647b5067f3ae https://www.encodeproject.org/files/ENCFF000OZT/@@download/ENCFF000OZT.bam hg19 archived low read depth biological replicates with identical biosample missing control alignments ENCFF000OZW bigBed broadPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDY 328050 Richard Myers, HAIB b7f60840f8e73cad78cd2050c9a67ca1 https://www.encodeproject.org/files/ENCFF000OZW/@@download/ENCFF000OZW.bigBed hg19 archived low read depth biological replicates with identical biosample missing control alignments ENCFF000OZX bigBed broadPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDZ 378540 Richard Myers, HAIB 78a7dab9b30f4d9901c381bcd5bc07d8 https://www.encodeproject.org/files/ENCFF000OZX/@@download/ENCFF000OZX.bigBed hg19 archived low read depth biological replicates with identical biosample missing control alignments ENCFF000OZY bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PAH 1472011638 Richard Myers, HAIB 3378bf46acff8c498b390b16c81de994 https://www.encodeproject.org/files/ENCFF000OZY/@@download/ENCFF000OZY.bam hg19 archived low read depth biological replicates with identical biosample missing control alignments ENCFF000PAA bigWig raw signal ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 220724631 Richard Myers, HAIB 90236b81fcb15d7829dceb11d4ec7ed2 https://www.encodeproject.org/files/ENCFF000PAA/@@download/ENCFF000PAA.bigWig hg19 archived low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PAB bigWig raw signal ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 238020385 Richard Myers, HAIB 5b4f9eae96f4cd627fc951a12361f8d1 https://www.encodeproject.org/files/ENCFF000PAB/@@download/ENCFF000PAB.bigWig hg19 archived low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PAH fastq reads ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1516420945 Richard Myers, HAIB 5fc5d40c03149f8ffd58188bf4ebe669 https://www.encodeproject.org/files/ENCFF000PAH/@@download/ENCFF000PAH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released low read depth biological replicates with identical biosample missing control alignments ENCFF000PAI fastq reads ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1534455515 Richard Myers, HAIB 67761c9f1cfbee9042f7e8ab71e4e3b4 https://www.encodeproject.org/files/ENCFF000PAI/@@download/ENCFF000PAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released low read depth biological replicates with identical biosample missing control alignments ENCFF001UDY bed broadPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 161923 Richard Myers, HAIB f51811624309dee9545a48bec0b6c649 https://www.encodeproject.org/files/ENCFF001UDY/@@download/ENCFF001UDY.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001UDZ bed broadPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 198999 Richard Myers, HAIB 984de86e2efb88e3e5012eeaa60eaccf https://www.encodeproject.org/files/ENCFF001UDZ/@@download/ENCFF001UDZ.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF726DLQ bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PAH, ENCFF643CGH 1222561961 ENCODE Processing Pipeline ca974efe65fb3fd50536aef49685ea0c https://www.encodeproject.org/files/ENCFF726DLQ/@@download/ENCFF726DLQ.bam GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF219BXD bam unfiltered alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PAH, ENCFF643CGH 1583175841 ENCODE Processing Pipeline 40471de0d2b683623fcc07cf19859c2c https://www.encodeproject.org/files/ENCFF219BXD/@@download/ENCFF219BXD.bam GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF087HBR bam unfiltered alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PAI, ENCFF807MUK 1562292031 ENCODE Processing Pipeline 000b850ba66c48e531dae49365b9ef99 https://www.encodeproject.org/files/ENCFF087HBR/@@download/ENCFF087HBR.bam hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF560UTZ bam unfiltered alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PAH, ENCFF807MUK 1580922937 ENCODE Processing Pipeline 970aa951d3236d41f2d9168090b17845 https://www.encodeproject.org/files/ENCFF560UTZ/@@download/ENCFF560UTZ.bam hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF242DVM bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PAI, ENCFF807MUK 1079615364 ENCODE Processing Pipeline c56c95a6ddeabb8e566494a6108bdc05 https://www.encodeproject.org/files/ENCFF242DVM/@@download/ENCFF242DVM.bam hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF904LDR bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PAH, ENCFF807MUK 1222220289 ENCODE Processing Pipeline 7107162899eb1d927088c7ceace97fbe https://www.encodeproject.org/files/ENCFF904LDR/@@download/ENCFF904LDR.bam hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF374UIA bam unfiltered alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PAI, ENCFF643CGH 1564295327 ENCODE Processing Pipeline 82408c82e379f98417def4f3b11873a9 https://www.encodeproject.org/files/ENCFF374UIA/@@download/ENCFF374UIA.bam GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF073LHY bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PAI, ENCFF643CGH 1079969044 ENCODE Processing Pipeline 4ca6d97330c25354564bfa5f6e995fac https://www.encodeproject.org/files/ENCFF073LHY/@@download/ENCFF073LHY.bam GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF999JKB bigWig signal p-value ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF073LHY 439823741 ENCODE Processing Pipeline f13b0ac03cc4bc0ad0dc5787d4f984c9 https://www.encodeproject.org/files/ENCFF999JKB/@@download/ENCFF999JKB.bigWig GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF136DCL bigWig signal p-value ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF726DLQ 565814593 ENCODE Processing Pipeline 1bd189f4f57894602ec8fa97dbfb244b https://www.encodeproject.org/files/ENCFF136DCL/@@download/ENCFF136DCL.bigWig GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF193VLH bigWig signal p-value ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF073LHY, ENCFF726DLQ 886029915 ENCODE Processing Pipeline 24f84411375cfcacc10ac54c40b02b36 https://www.encodeproject.org/files/ENCFF193VLH/@@download/ENCFF193VLH.bigWig GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF005TMO bigWig fold change over control ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF073LHY 420414285 ENCODE Processing Pipeline 2946ff9ac31402a9ac91d7e6c0fed36e https://www.encodeproject.org/files/ENCFF005TMO/@@download/ENCFF005TMO.bigWig GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF629EVV bigWig fold change over control ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF726DLQ 477345777 ENCODE Processing Pipeline b8428fdd435655e3f3b4335e5ee3e21e https://www.encodeproject.org/files/ENCFF629EVV/@@download/ENCFF629EVV.bigWig GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF415KJH bigWig fold change over control ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF073LHY, ENCFF726DLQ 913537317 ENCODE Processing Pipeline f25660929d99e671890567c412ccb0d2 https://www.encodeproject.org/files/ENCFF415KJH/@@download/ENCFF415KJH.bigWig GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF833ZRV bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF726DLQ 5301138 ENCODE Processing Pipeline 0aeb1db6a08db0b66fb5970fe6d9028f https://www.encodeproject.org/files/ENCFF833ZRV/@@download/ENCFF833ZRV.bed.gz GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF021RCH bigBed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF973IDD 13059245 ENCODE Processing Pipeline 0ef36c47248a2f3e6e72e5bb0d79ffd0 https://www.encodeproject.org/files/ENCFF021RCH/@@download/ENCFF021RCH.bigBed GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF987GKK bigBed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF833ZRV 10922580 ENCODE Processing Pipeline f2f986a243a311fec7a1638d7f3d5d7d https://www.encodeproject.org/files/ENCFF987GKK/@@download/ENCFF987GKK.bigBed GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF488HDC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF333VCK 859601 ENCODE Processing Pipeline f311e7daec5aa0bccad3eea7ece69fe5 https://www.encodeproject.org/files/ENCFF488HDC/@@download/ENCFF488HDC.bigBed GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF998KDQ bed narrowPeak optimal idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF833ZRV, ENCFF848GBZ, ENCFF973IDD 423275 ENCODE Processing Pipeline 74b7f5b3689916cf722046e595380c61 https://www.encodeproject.org/files/ENCFF998KDQ/@@download/ENCFF998KDQ.bed.gz GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF277ZOA bigBed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF848GBZ 13390118 ENCODE Processing Pipeline 2b180e4f8698248cf6b3165d57ad51dc https://www.encodeproject.org/files/ENCFF277ZOA/@@download/ENCFF277ZOA.bigBed GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF258AQQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF998KDQ 913404 ENCODE Processing Pipeline 4d37edf63d56e565c4ee69b64e8b6b94 https://www.encodeproject.org/files/ENCFF258AQQ/@@download/ENCFF258AQQ.bigBed GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF333VCK bed narrowPeak conservative idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF833ZRV, ENCFF848GBZ, ENCFF973IDD 390371 ENCODE Processing Pipeline e9aa814badcb1197446af03199d12fd3 https://www.encodeproject.org/files/ENCFF333VCK/@@download/ENCFF333VCK.bed.gz GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF848GBZ bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF073LHY, ENCFF726DLQ 6294409 ENCODE Processing Pipeline 910044dd3dd861c75f9743182eb5dc0f https://www.encodeproject.org/files/ENCFF848GBZ/@@download/ENCFF848GBZ.bed.gz GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF973IDD bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF073LHY 5305060 ENCODE Processing Pipeline 1f5cfee851b08608edb1b42e4bbf944e https://www.encodeproject.org/files/ENCFF973IDD/@@download/ENCFF973IDD.bed.gz GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF395RRX bigWig signal p-value ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242DVM, ENCFF831FMU 530772830 ENCODE Processing Pipeline f72f777d3bcdaaa4aa63f47505cdde5b https://www.encodeproject.org/files/ENCFF395RRX/@@download/ENCFF395RRX.bigWig hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF383XWW bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF622MSR, ENCFF904LDR 5301624 ENCODE Processing Pipeline f78001de2701c3d1ead6e1dfb6d25875 https://www.encodeproject.org/files/ENCFF383XWW/@@download/ENCFF383XWW.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF772HIT bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242DVM, ENCFF831FMU 5306321 ENCODE Processing Pipeline 2d56dc8d6dd0bc4727e57c7c1d979985 https://www.encodeproject.org/files/ENCFF772HIT/@@download/ENCFF772HIT.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF215YYW bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF242DVM, ENCFF622MSR, ENCFF831FMU, ENCFF904LDR 6298537 ENCODE Processing Pipeline 70bee3f9011e67a871d65aad2e2e1a73 https://www.encodeproject.org/files/ENCFF215YYW/@@download/ENCFF215YYW.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF267EWE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF950JTT 858286 ENCODE Processing Pipeline 25162ac3f28c669b222ab815392e09dd https://www.encodeproject.org/files/ENCFF267EWE/@@download/ENCFF267EWE.bigBed hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF043RCO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF088WYS 921872 ENCODE Processing Pipeline abcf74cea78340e5272c65b077903204 https://www.encodeproject.org/files/ENCFF043RCO/@@download/ENCFF043RCO.bigBed hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF537AUT bigWig fold change over control ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242DVM, ENCFF831FMU 429236555 ENCODE Processing Pipeline 56b4108ad6db8e5e0ac70a7395ca6345 https://www.encodeproject.org/files/ENCFF537AUT/@@download/ENCFF537AUT.bigWig hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF413DFS bigWig fold change over control ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF622MSR, ENCFF904LDR 471507573 ENCODE Processing Pipeline 257359085627986b551d51659c8d2033 https://www.encodeproject.org/files/ENCFF413DFS/@@download/ENCFF413DFS.bigWig hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF024PXO bigWig fold change over control ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF242DVM, ENCFF622MSR, ENCFF831FMU, ENCFF904LDR 909935909 ENCODE Processing Pipeline 439cd6617bfede12dc708abc51644fff https://www.encodeproject.org/files/ENCFF024PXO/@@download/ENCFF024PXO.bigWig hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF303AHQ bigBed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF772HIT 13058506 ENCODE Processing Pipeline 87e8d140aa76ddd8a2d27c9120a989ac https://www.encodeproject.org/files/ENCFF303AHQ/@@download/ENCFF303AHQ.bigBed hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF353MSD bigBed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF383XWW 10928209 ENCODE Processing Pipeline 0f4e1bf089da8e0dc96f105ef0fa3c5d https://www.encodeproject.org/files/ENCFF353MSD/@@download/ENCFF353MSD.bigBed hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF656PAC bigBed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF215YYW 13387251 ENCODE Processing Pipeline 1b5b8e50a229064d6507a2c2bbd6ea00 https://www.encodeproject.org/files/ENCFF656PAC/@@download/ENCFF656PAC.bigBed hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF580SZH bigWig signal p-value ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF622MSR, ENCFF904LDR 446298355 ENCODE Processing Pipeline 72ad3bff91ab871126519b46156edc3d https://www.encodeproject.org/files/ENCFF580SZH/@@download/ENCFF580SZH.bigWig hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF209ILW bigWig signal p-value ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF242DVM, ENCFF622MSR, ENCFF831FMU, ENCFF904LDR 945654291 ENCODE Processing Pipeline 7f1f6987694db6e13457c7cf8d0e4c9c https://www.encodeproject.org/files/ENCFF209ILW/@@download/ENCFF209ILW.bigWig hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF950JTT bed narrowPeak conservative idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF215YYW, ENCFF383XWW, ENCFF772HIT 390107 ENCODE Processing Pipeline 2cbb71e35123474141876f2d96fd7e7c https://www.encodeproject.org/files/ENCFF950JTT/@@download/ENCFF950JTT.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF088WYS bed narrowPeak optimal idr thresholded peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF215YYW, ENCFF383XWW, ENCFF772HIT 429111 ENCODE Processing Pipeline 552adbf4f3cb71bf7ca90692e963e8df https://www.encodeproject.org/files/ENCFF088WYS/@@download/ENCFF088WYS.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF001RUK fastq reads ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1331817680 Richard Myers, HAIB 32cd07386ea4618d9e4d928f4e59e102 SRA:SRR5331596 https://www.encodeproject.org/files/ENCFF001RUK/@@download/ENCFF001RUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVN/ released low read depth, antibody characterized with exemption ENCFF511TAB bigWig signal p-value ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT 1045269060 ENCODE Processing Pipeline c987a2fb68a4dad2fdc1dd48d3790006 https://www.encodeproject.org/files/ENCFF511TAB/@@download/ENCFF511TAB.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF049GGD bigWig fold change over control ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT 776022821 ENCODE Processing Pipeline 08c55de4614744e96cdfa59cedb0b9b1 https://www.encodeproject.org/files/ENCFF049GGD/@@download/ENCFF049GGD.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF696VXH fastq reads ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1396047848 Richard Myers, HAIB 1d54dcc020f39b3d77625553e176b8c4 SRA:SRR5331597 https://www.encodeproject.org/files/ENCFF696VXH/@@download/ENCFF696VXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, antibody characterized with exemption ENCFF515KNP bam unfiltered alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUK, ENCFF643CGH 1419700983 ENCODE Processing Pipeline 9afadaeb08b0391a0743b2b6cc592096 https://www.encodeproject.org/files/ENCFF515KNP/@@download/ENCFF515KNP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF002FHN bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUK, ENCFF643CGH 1034444747 ENCODE Processing Pipeline 20cfda0b36f9878a3868fedf9874765f https://www.encodeproject.org/files/ENCFF002FHN/@@download/ENCFF002FHN.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF918SIT bigWig signal p-value ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF002FHN, ENCFF204GLJ, ENCFF332SVJ 925460065 ENCODE Processing Pipeline f762e5f6106115dc78bc8910418eb056 https://www.encodeproject.org/files/ENCFF918SIT/@@download/ENCFF918SIT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF277UWP bigWig signal p-value ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF204GLJ, ENCFF332SVJ, ENCFF836NST 1133953291 ENCODE Processing Pipeline fd9cbf2a17dcaeb2cf369b9af4cb17c5 https://www.encodeproject.org/files/ENCFF277UWP/@@download/ENCFF277UWP.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF583JWT bigWig fold change over control ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF002FHN, ENCFF204GLJ, ENCFF332SVJ 760598263 ENCODE Processing Pipeline 76cbcc958190332fd61b70c1ff8f3196 https://www.encodeproject.org/files/ENCFF583JWT/@@download/ENCFF583JWT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF324FAQ bigWig signal p-value ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF002FHN, ENCFF204GLJ, ENCFF332SVJ, ENCFF836NST 1169759986 ENCODE Processing Pipeline 824f5c8726c06dfcf13b4282c6301975 https://www.encodeproject.org/files/ENCFF324FAQ/@@download/ENCFF324FAQ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF699AFZ bigWig fold change over control ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF204GLJ, ENCFF332SVJ, ENCFF836NST 712355051 ENCODE Processing Pipeline 9eb9c0fd734dea3f271b875c6582fd13 https://www.encodeproject.org/files/ENCFF699AFZ/@@download/ENCFF699AFZ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF328UEJ bigWig fold change over control ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF002FHN, ENCFF204GLJ, ENCFF332SVJ, ENCFF836NST 1158267341 ENCODE Processing Pipeline 6f89c61f2a28807f751c3e4e3c3f03a5 https://www.encodeproject.org/files/ENCFF328UEJ/@@download/ENCFF328UEJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF355XHR bam unfiltered alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUK, ENCFF807MUK 1416929475 ENCODE Processing Pipeline b540bab6bfe08a31b1f414f3bf98d8e7 https://www.encodeproject.org/files/ENCFF355XHR/@@download/ENCFF355XHR.bam hg19 released low read depth, antibody characterized with exemption ENCFF636GYT bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUK, ENCFF807MUK 1034920838 ENCODE Processing Pipeline 7e781bae7e942fc0379038f78f4f5373 https://www.encodeproject.org/files/ENCFF636GYT/@@download/ENCFF636GYT.bam hg19 released low read depth, antibody characterized with exemption ENCFF791ACK bigBed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF770XGT 13369873 ENCODE Processing Pipeline e698d0ccb4f9c04165cff812b3fedb18 https://www.encodeproject.org/files/ENCFF791ACK/@@download/ENCFF791ACK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF449ZKG bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF204GLJ, ENCFF332SVJ, ENCFF836NST 6242857 ENCODE Processing Pipeline f57d50dd25547d438eb2fc58621272f0 https://www.encodeproject.org/files/ENCFF449ZKG/@@download/ENCFF449ZKG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF770XGT bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF002FHN, ENCFF204GLJ, ENCFF332SVJ, ENCFF836NST 6705971 ENCODE Processing Pipeline a77523a29d6805fc32c4923362d93d67 https://www.encodeproject.org/files/ENCFF770XGT/@@download/ENCFF770XGT.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF888BUW bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF002FHN, ENCFF204GLJ, ENCFF332SVJ 5969385 ENCODE Processing Pipeline 29ddfe6d51e93a5c50b47a4a97fd5512 https://www.encodeproject.org/files/ENCFF888BUW/@@download/ENCFF888BUW.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF003DZL bigBed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF888BUW 13326393 ENCODE Processing Pipeline a5a0b2319f054b3cc95e53f2f2f431d7 https://www.encodeproject.org/files/ENCFF003DZL/@@download/ENCFF003DZL.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF524FAN bigBed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF449ZKG 13384804 ENCODE Processing Pipeline 83b1b961bed2fa71dc702f671054929b https://www.encodeproject.org/files/ENCFF524FAN/@@download/ENCFF524FAN.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF452INW bed narrowPeak conservative idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF449ZKG, ENCFF770XGT, ENCFF888BUW 87475 ENCODE Processing Pipeline 452e76c6b1cde91d31a6cea314121946 https://www.encodeproject.org/files/ENCFF452INW/@@download/ENCFF452INW.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF426GSY bed narrowPeak optimal idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF449ZKG, ENCFF770XGT, ENCFF888BUW 123462 ENCODE Processing Pipeline f372203cf93a8bdcd16c8592f8bfcf8d https://www.encodeproject.org/files/ENCFF426GSY/@@download/ENCFF426GSY.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF846SVG bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF426GSY 278512 ENCODE Processing Pipeline 8d5ba2913fcc67fadf89a162348b978f https://www.encodeproject.org/files/ENCFF846SVG/@@download/ENCFF846SVG.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF069TOP bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF452INW 224076 ENCODE Processing Pipeline 6007617e3cbe4127c6baa3b8d19e2a2c https://www.encodeproject.org/files/ENCFF069TOP/@@download/ENCFF069TOP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF905HXC bam unfiltered alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF643CGH, ENCFF696VXH 1497814819 ENCODE Processing Pipeline 33fc961f7c3e416e0988b328fe19c2be https://www.encodeproject.org/files/ENCFF905HXC/@@download/ENCFF905HXC.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF836NST bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF643CGH, ENCFF696VXH 1074173245 ENCODE Processing Pipeline c0eeef98b50ccbaf469ee7612fc1bcc0 https://www.encodeproject.org/files/ENCFF836NST/@@download/ENCFF836NST.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF307VES bam unfiltered alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF696VXH, ENCFF807MUK 1494337679 ENCODE Processing Pipeline 694212b3fb9ea94d22ac517e25bc4df7 https://www.encodeproject.org/files/ENCFF307VES/@@download/ENCFF307VES.bam hg19 released low read depth, antibody characterized with exemption ENCFF970YTT bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF696VXH, ENCFF807MUK 1074861134 ENCODE Processing Pipeline 5ec7a3e024110ee86259720e498b3d12 https://www.encodeproject.org/files/ENCFF970YTT/@@download/ENCFF970YTT.bam hg19 released low read depth, antibody characterized with exemption ENCFF956QNK bigWig signal p-value ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF970YTT 1169317167 ENCODE Processing Pipeline 424b9f46260dca24101d7f6080b407ef https://www.encodeproject.org/files/ENCFF956QNK/@@download/ENCFF956QNK.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF331DKM bigWig signal p-value ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT, ENCFF970YTT 1103172585 ENCODE Processing Pipeline 17bb19b0be12b83aefc192456bc332e2 https://www.encodeproject.org/files/ENCFF331DKM/@@download/ENCFF331DKM.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF639XEG bigWig fold change over control ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF970YTT 711605941 ENCODE Processing Pipeline 9522a76905999a619465798c855d3173 https://www.encodeproject.org/files/ENCFF639XEG/@@download/ENCFF639XEG.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF884NXM bigWig fold change over control ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT, ENCFF970YTT 1180282094 ENCODE Processing Pipeline 707fc3396824db3f692cb20ab510f51e https://www.encodeproject.org/files/ENCFF884NXM/@@download/ENCFF884NXM.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF235BMG bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT, ENCFF970YTT 6694225 ENCODE Processing Pipeline 8fbe67c8e544b0c77491a647e48ab12c https://www.encodeproject.org/files/ENCFF235BMG/@@download/ENCFF235BMG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF058UQC bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF545VNY 275487 ENCODE Processing Pipeline b40e4b834dae013333ef15e1c0adf333 https://www.encodeproject.org/files/ENCFF058UQC/@@download/ENCFF058UQC.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF539MNA bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT 6192680 ENCODE Processing Pipeline 929042b07cf8f9c996d1039cf9d60363 https://www.encodeproject.org/files/ENCFF539MNA/@@download/ENCFF539MNA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF095DJV bed narrowPeak conservative idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF235BMG, ENCFF539MNA, ENCFF915TWO 86751 ENCODE Processing Pipeline f5abbd0ace1017af73f7970bd0533b9c https://www.encodeproject.org/files/ENCFF095DJV/@@download/ENCFF095DJV.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF550PLL bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF095DJV 222611 ENCODE Processing Pipeline e5ae3c5bd58a04e4f4b2a6f12d1fe211 https://www.encodeproject.org/files/ENCFF550PLL/@@download/ENCFF550PLL.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF545VNY bed narrowPeak optimal idr thresholded peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF235BMG, ENCFF539MNA, ENCFF915TWO 122108 ENCODE Processing Pipeline a29ad50d06ead7823ea05e7b4a848633 https://www.encodeproject.org/files/ENCFF545VNY/@@download/ENCFF545VNY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF158MPA bigBed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF235BMG 13355647 ENCODE Processing Pipeline 5df3289489e7aee80f1b5e5f40acc7b7 https://www.encodeproject.org/files/ENCFF158MPA/@@download/ENCFF158MPA.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF915TWO bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF970YTT 6245568 ENCODE Processing Pipeline be53c15e63e17b68db330f759e7bf3e4 https://www.encodeproject.org/files/ENCFF915TWO/@@download/ENCFF915TWO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF492SKI bigBed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF539MNA 13336446 ENCODE Processing Pipeline fead6907f3c5c3ffe42f1e299603da9c https://www.encodeproject.org/files/ENCFF492SKI/@@download/ENCFF492SKI.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF662EWP bigBed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF915TWO 13376467 ENCODE Processing Pipeline e9d1cd375a4d39b91fcc8f7371c0e478 https://www.encodeproject.org/files/ENCFF662EWP/@@download/ENCFF662EWP.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF157XWR bam unfiltered alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEB, ENCFF807MUK 1154479057 ENCODE Processing Pipeline c269717dec9fc70558bff457f81a4029 https://www.encodeproject.org/files/ENCFF157XWR/@@download/ENCFF157XWR.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF380QNJ bam unfiltered alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEK, ENCFF807MUK 1259238902 ENCODE Processing Pipeline 0cf35d1e567159f23961b5826da61233 https://www.encodeproject.org/files/ENCFF380QNJ/@@download/ENCFF380QNJ.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF002EEB fastq reads ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 828202573 Michael Snyder, Stanford 34e3d186046f404947bf0b638459e29e SRA:SRR5111238 https://www.encodeproject.org/files/ENCFF002EEB/@@download/ENCFF002EEB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, borderline replicate concordance, low read depth ENCFF002EEK fastq reads ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 901767594 Michael Snyder, Stanford 16d63ab4b2855b7e1e898f3b49d08c94 SRA:SRR5111237 https://www.encodeproject.org/files/ENCFF002EEK/@@download/ENCFF002EEK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, borderline replicate concordance, low read depth ENCFF890OID bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF002EEK, ENCFF807MUK 796998509 ENCODE Processing Pipeline c838bca76f12095f6c534e188cfe1c9a https://www.encodeproject.org/files/ENCFF890OID/@@download/ENCFF890OID.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF460VLB bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF002EEB, ENCFF807MUK 726426359 ENCODE Processing Pipeline 4e4c412254e8765d373bfa463564c689 https://www.encodeproject.org/files/ENCFF460VLB/@@download/ENCFF460VLB.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF698AJT bigWig signal p-value ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF890OID 512768055 ENCODE Processing Pipeline 98252f362dcef49a8fdab6ae9f9c2c84 https://www.encodeproject.org/files/ENCFF698AJT/@@download/ENCFF698AJT.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF558BWS bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF460VLB, ENCFF879OQC, ENCFF890OID 6044352 ENCODE Processing Pipeline 9214e6951304b9d8adf49bcdd36c2dd7 https://www.encodeproject.org/files/ENCFF558BWS/@@download/ENCFF558BWS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF535TIU bigWig signal p-value ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF460VLB, ENCFF879OQC, ENCFF890OID 987536449 ENCODE Processing Pipeline 2e35e44b9b8691b229ce5d3fb8faf664 https://www.encodeproject.org/files/ENCFF535TIU/@@download/ENCFF535TIU.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF493CPV bigWig fold change over control ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF890OID 434883875 ENCODE Processing Pipeline 3a4194c3ead4159ec416c7544b62d285 https://www.encodeproject.org/files/ENCFF493CPV/@@download/ENCFF493CPV.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF394FCW bigWig fold change over control ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF460VLB, ENCFF879OQC 444123179 ENCODE Processing Pipeline 929cc47ea0f50a27da374c14969c2966 https://www.encodeproject.org/files/ENCFF394FCW/@@download/ENCFF394FCW.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF611XPF bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF890OID 4886038 ENCODE Processing Pipeline b3815ddeec64dda0ee78e87fa3eebd62 https://www.encodeproject.org/files/ENCFF611XPF/@@download/ENCFF611XPF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF315GZR bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF460VLB, ENCFF879OQC 4255538 ENCODE Processing Pipeline 4f8d22993149919034182d1036579416 https://www.encodeproject.org/files/ENCFF315GZR/@@download/ENCFF315GZR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF456OUS bigBed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF558BWS 11319836 ENCODE Processing Pipeline 6e16bfe762fc940cdefda63e306180ca https://www.encodeproject.org/files/ENCFF456OUS/@@download/ENCFF456OUS.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF926PGH bigWig signal p-value ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF460VLB, ENCFF879OQC 465272578 ENCODE Processing Pipeline 21754eeccf2f435328a880540744568a https://www.encodeproject.org/files/ENCFF926PGH/@@download/ENCFF926PGH.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF720YCI bigWig fold change over control ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF460VLB, ENCFF879OQC, ENCFF890OID 924593513 ENCODE Processing Pipeline 4edbb2afb674f2b8d01e33da8ed4f22d https://www.encodeproject.org/files/ENCFF720YCI/@@download/ENCFF720YCI.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF861ZFM bigBed narrowPeak optimal idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF660VPM 135411 ENCODE Processing Pipeline 88b91ce458c67e68322933f71361257f https://www.encodeproject.org/files/ENCFF861ZFM/@@download/ENCFF861ZFM.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF808CFK bed narrowPeak conservative idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF315GZR, ENCFF558BWS, ENCFF611XPF 27851 ENCODE Processing Pipeline b907dc9da9a5797b4a3025ff2473167f https://www.encodeproject.org/files/ENCFF808CFK/@@download/ENCFF808CFK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF717UBI bigBed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF611XPF 11000431 ENCODE Processing Pipeline f643ad322e5f13486176d8b4d9d41568 https://www.encodeproject.org/files/ENCFF717UBI/@@download/ENCFF717UBI.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF793EQW bigBed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF315GZR 10761250 ENCODE Processing Pipeline c805642d3c1300b3d5da3bbd8deb05fd https://www.encodeproject.org/files/ENCFF793EQW/@@download/ENCFF793EQW.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF055AYE bigBed narrowPeak conservative idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF808CFK 104341 ENCODE Processing Pipeline e46bca0b82cd5a3ebe5eadda26419e2e https://www.encodeproject.org/files/ENCFF055AYE/@@download/ENCFF055AYE.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF660VPM bed narrowPeak optimal idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF315GZR, ENCFF558BWS, ENCFF611XPF 48570 ENCODE Processing Pipeline 627872c6c63dc5283d8687e9efa8fe7b https://www.encodeproject.org/files/ENCFF660VPM/@@download/ENCFF660VPM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF807KWU bam unfiltered alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEK, ENCFF643CGH 1264282874 ENCODE Processing Pipeline 119abee6289b6d8cd0c3fba72731ce0c https://www.encodeproject.org/files/ENCFF807KWU/@@download/ENCFF807KWU.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF417FHN bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEB, ENCFF643CGH 725898596 ENCODE Processing Pipeline 4d5699d2cd86734f1595141095503f92 https://www.encodeproject.org/files/ENCFF417FHN/@@download/ENCFF417FHN.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF373SHV bam unfiltered alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEB, ENCFF643CGH 1159101782 ENCODE Processing Pipeline d7fcdf90fc8a67a8f5e17d65422f0334 https://www.encodeproject.org/files/ENCFF373SHV/@@download/ENCFF373SHV.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF003FNG bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEK, ENCFF643CGH 796413587 ENCODE Processing Pipeline 53866be3b69bf37033b72c5ab053ff58 https://www.encodeproject.org/files/ENCFF003FNG/@@download/ENCFF003FNG.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF917UZZ bigWig signal p-value ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF003FNG, ENCFF156FED 464488413 ENCODE Processing Pipeline 1da1b29f0107b1b04bd75e2412881ae0 https://www.encodeproject.org/files/ENCFF917UZZ/@@download/ENCFF917UZZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF842BNX bigWig signal p-value ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF417FHN, ENCFF577FNG 466021497 ENCODE Processing Pipeline 67b2fed22ed17e49c9a7b0f8c07042f8 https://www.encodeproject.org/files/ENCFF842BNX/@@download/ENCFF842BNX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF870EFW bigWig signal p-value ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003FNG, ENCFF156FED, ENCFF417FHN, ENCFF577FNG 1034090693 ENCODE Processing Pipeline 8288ab9a0fcbcf4c769130de1099dfa2 https://www.encodeproject.org/files/ENCFF870EFW/@@download/ENCFF870EFW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF127PLS bigWig fold change over control ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF003FNG, ENCFF156FED 434802037 ENCODE Processing Pipeline a7a09ca88d2f2787912c119219d79013 https://www.encodeproject.org/files/ENCFF127PLS/@@download/ENCFF127PLS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF526IDO bigWig fold change over control ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF417FHN, ENCFF577FNG 443467112 ENCODE Processing Pipeline d1a2fc9605e4cad62b2371dc9a4f2b2a https://www.encodeproject.org/files/ENCFF526IDO/@@download/ENCFF526IDO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF492DSP bigWig fold change over control ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003FNG, ENCFF156FED, ENCFF417FHN, ENCFF577FNG 955456160 ENCODE Processing Pipeline f766b23c6058faae05d19c4daafc8856 https://www.encodeproject.org/files/ENCFF492DSP/@@download/ENCFF492DSP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF899ZVN bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003FNG, ENCFF156FED, ENCFF417FHN, ENCFF577FNG 5977605 ENCODE Processing Pipeline 7cae2a795579bba647f9eb7ecbf87719 https://www.encodeproject.org/files/ENCFF899ZVN/@@download/ENCFF899ZVN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF484FZK bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF417FHN, ENCFF577FNG 4091359 ENCODE Processing Pipeline 1db8132c60456cce55068c509756f938 https://www.encodeproject.org/files/ENCFF484FZK/@@download/ENCFF484FZK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF638URI bigBed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF899ZVN 11321904 ENCODE Processing Pipeline 891a3d3e864c2f0604a8cacb2c6cd64f https://www.encodeproject.org/files/ENCFF638URI/@@download/ENCFF638URI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF020ENW bigBed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF484FZK 10538888 ENCODE Processing Pipeline e2455266f2fb99eded75acc612cce510 https://www.encodeproject.org/files/ENCFF020ENW/@@download/ENCFF020ENW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF460HJU bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF003FNG, ENCFF156FED 4663355 ENCODE Processing Pipeline 56a32039f7074be351bdd56e206248f6 https://www.encodeproject.org/files/ENCFF460HJU/@@download/ENCFF460HJU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF294NOX bigBed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF460HJU 10865647 ENCODE Processing Pipeline a39bb6abdc8d3412ece7b3745db1d66f https://www.encodeproject.org/files/ENCFF294NOX/@@download/ENCFF294NOX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF277XFN bigBed narrowPeak conservative idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF569AQR 103670 ENCODE Processing Pipeline 3439b2bc988e4b840c6708fc976ada0b https://www.encodeproject.org/files/ENCFF277XFN/@@download/ENCFF277XFN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF569AQR bed narrowPeak conservative idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF460HJU, ENCFF484FZK, ENCFF899ZVN 26950 ENCODE Processing Pipeline 4dee60c47e9d12c1762d288f21ef47f1 https://www.encodeproject.org/files/ENCFF569AQR/@@download/ENCFF569AQR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF658SGJ bed narrowPeak optimal idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF460HJU, ENCFF484FZK, ENCFF899ZVN 46712 ENCODE Processing Pipeline 4de570718b1b7ba652606e67430ff594 https://www.encodeproject.org/files/ENCFF658SGJ/@@download/ENCFF658SGJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF787DQV bigBed narrowPeak optimal idr thresholded peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF658SGJ 134233 ENCODE Processing Pipeline 5724b6d6cc351a19d6ce2c6e03340a41 https://www.encodeproject.org/files/ENCFF787DQV/@@download/ENCFF787DQV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF230PMN bam unfiltered alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF283OAI, ENCFF806EBY, ENCFF807MUK 5069351875 ENCODE Processing Pipeline f686b84b4407b692f19592a5cb6b720d https://www.encodeproject.org/files/ENCFF230PMN/@@download/ENCFF230PMN.bam hg19 released ENCFF713NFU bam unfiltered alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF323EKY, ENCFF546MGM, ENCFF807MUK 5034751362 ENCODE Processing Pipeline 637b4c7b92dc35a1b81288679e2c4daa https://www.encodeproject.org/files/ENCFF713NFU/@@download/ENCFF713NFU.bam hg19 released ENCFF323EKY fastq reads ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF546MGM 2252355839 Michael Snyder, Stanford 468d9589a249ad0de629dd79a408ee0d SRA:SRR5111335 https://www.encodeproject.org/files/ENCFF323EKY/@@download/ENCFF323EKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF283OAI fastq reads ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF806EBY 2269974159 Michael Snyder, Stanford 8e8c08d51ebf8d6d9d50ef1069cf6042 SRA:SRR5111334 https://www.encodeproject.org/files/ENCFF283OAI/@@download/ENCFF283OAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF546MGM fastq reads ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF323EKY 2221060215 Michael Snyder, Stanford fb91ffa228d378f624ddba5f09f35fec SRA:SRR5111335 https://www.encodeproject.org/files/ENCFF546MGM/@@download/ENCFF546MGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF806EBY fastq reads ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF283OAI 2234048655 Michael Snyder, Stanford 63465a809e15c33d5c8e787309a1407b SRA:SRR5111334 https://www.encodeproject.org/files/ENCFF806EBY/@@download/ENCFF806EBY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF290PNU bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF283OAI, ENCFF806EBY, ENCFF807MUK 4290231028 ENCODE Processing Pipeline b4b19ec756a4ed1143c0639e562f6359 https://www.encodeproject.org/files/ENCFF290PNU/@@download/ENCFF290PNU.bam hg19 released ENCFF540FMP bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF323EKY, ENCFF546MGM, ENCFF807MUK 4283100419 ENCODE Processing Pipeline 0ea2aefdb2142c6d188d89733cfbb011 https://www.encodeproject.org/files/ENCFF540FMP/@@download/ENCFF540FMP.bam hg19 released ENCFF395CCW bigWig signal p-value ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF290PNU, ENCFF999EQI 1097592029 ENCODE Processing Pipeline ec68cf36b9d9e80798113b226a5e0f90 https://www.encodeproject.org/files/ENCFF395CCW/@@download/ENCFF395CCW.bigWig hg19 released ENCFF644LDA bigWig fold change over control ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF449NNE, ENCFF540FMP 1198143295 ENCODE Processing Pipeline 75859a42abdb642ca4199b407ab18513 https://www.encodeproject.org/files/ENCFF644LDA/@@download/ENCFF644LDA.bigWig hg19 released ENCFF927DCI bigWig fold change over control ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF290PNU, ENCFF999EQI 1084122233 ENCODE Processing Pipeline bdd6129ce3c4d5b3724e24a9235f2828 https://www.encodeproject.org/files/ENCFF927DCI/@@download/ENCFF927DCI.bigWig hg19 released ENCFF549YDX bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF449NNE, ENCFF540FMP 6167982 ENCODE Processing Pipeline 0ddce83637fc1bf4b9c6eeaebf3ab8b8 https://www.encodeproject.org/files/ENCFF549YDX/@@download/ENCFF549YDX.bed.gz hg19 released ENCFF432MIZ bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF290PNU, ENCFF449NNE, ENCFF540FMP, ENCFF999EQI 7080295 ENCODE Processing Pipeline 85b192c13f748d372c092d08de23a43d https://www.encodeproject.org/files/ENCFF432MIZ/@@download/ENCFF432MIZ.bed.gz hg19 released ENCFF775MML bigBed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF549YDX 11339516 ENCODE Processing Pipeline 5ecbe067b4fa9dacafbe0cbc012db3b3 https://www.encodeproject.org/files/ENCFF775MML/@@download/ENCFF775MML.bigBed hg19 released ENCFF538TSR bigBed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF432MIZ 11388427 ENCODE Processing Pipeline a345a4cfcf4408e11ded2f0aaf9bc083 https://www.encodeproject.org/files/ENCFF538TSR/@@download/ENCFF538TSR.bigBed hg19 released ENCFF675TLS bed narrowPeak optimal idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF400BJI, ENCFF432MIZ, ENCFF549YDX 167811 ENCODE Processing Pipeline 34278c629fe0428ac2f4c6dfa275bc15 https://www.encodeproject.org/files/ENCFF675TLS/@@download/ENCFF675TLS.bed.gz hg19 released ENCFF094QYE bigBed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF400BJI 11364872 ENCODE Processing Pipeline 5542586423078696e4cc1d4d0417790c https://www.encodeproject.org/files/ENCFF094QYE/@@download/ENCFF094QYE.bigBed hg19 released ENCFF082AFF bigWig signal p-value ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF449NNE, ENCFF540FMP 1075092903 ENCODE Processing Pipeline c62edcef07021c522f58a251a26a7c8a https://www.encodeproject.org/files/ENCFF082AFF/@@download/ENCFF082AFF.bigWig hg19 released ENCFF590AAM bigWig signal p-value ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF290PNU, ENCFF449NNE, ENCFF540FMP, ENCFF999EQI 1922321476 ENCODE Processing Pipeline 46c34bd1215e2aa24d1f9b8c7584e081 https://www.encodeproject.org/files/ENCFF590AAM/@@download/ENCFF590AAM.bigWig hg19 released ENCFF923YCX bigWig fold change over control ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF290PNU, ENCFF449NNE, ENCFF540FMP, ENCFF999EQI 2033549665 ENCODE Processing Pipeline 62ca0e8f6ed8a9d0f4d2a1ad0a8c3e2e https://www.encodeproject.org/files/ENCFF923YCX/@@download/ENCFF923YCX.bigWig hg19 released ENCFF400BJI bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF290PNU, ENCFF999EQI 6023081 ENCODE Processing Pipeline 754ac46ee432a8221951361cc4382282 https://www.encodeproject.org/files/ENCFF400BJI/@@download/ENCFF400BJI.bed.gz hg19 released ENCFF324OAJ bed narrowPeak conservative idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF400BJI, ENCFF432MIZ, ENCFF549YDX 114904 ENCODE Processing Pipeline a4923ba5e64f77569dbcff8d9fe0fc76 https://www.encodeproject.org/files/ENCFF324OAJ/@@download/ENCFF324OAJ.bed.gz hg19 released ENCFF199BNK bigBed narrowPeak conservative idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF324OAJ 240287 ENCODE Processing Pipeline 2b7c4118b0f967ba5a8923ebade313fa https://www.encodeproject.org/files/ENCFF199BNK/@@download/ENCFF199BNK.bigBed hg19 released ENCFF957EHN bigBed narrowPeak optimal idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF675TLS 378030 ENCODE Processing Pipeline 22eefecaf93c58c6f642b0d14306d99b https://www.encodeproject.org/files/ENCFF957EHN/@@download/ENCFF957EHN.bigBed hg19 released ENCFF038LHD bam unfiltered alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF283OAI, ENCFF643CGH, ENCFF806EBY 5080653262 ENCODE Processing Pipeline a92ff6460b8c213732716c2608878ffd https://www.encodeproject.org/files/ENCFF038LHD/@@download/ENCFF038LHD.bam GRCh38 released ENCFF890ZPI bam unfiltered alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF323EKY, ENCFF546MGM, ENCFF643CGH 5045444430 ENCODE Processing Pipeline 731aa82ff39c5b8a75893e166abde4f4 https://www.encodeproject.org/files/ENCFF890ZPI/@@download/ENCFF890ZPI.bam GRCh38 released ENCFF396NXZ bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF323EKY, ENCFF546MGM, ENCFF643CGH 4295734765 ENCODE Processing Pipeline 1d24cf696c4cdec362439c0b26d1269a https://www.encodeproject.org/files/ENCFF396NXZ/@@download/ENCFF396NXZ.bam GRCh38 released ENCFF988UCQ bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF283OAI, ENCFF643CGH, ENCFF806EBY 4304293639 ENCODE Processing Pipeline 49e7411e020ca85772a332d8f2169e47 https://www.encodeproject.org/files/ENCFF988UCQ/@@download/ENCFF988UCQ.bam GRCh38 released ENCFF247FTP bigWig signal p-value ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF190EPQ, ENCFF396NXZ 1021072555 ENCODE Processing Pipeline edcc55b06bf71a5693b26eb399d9c53d https://www.encodeproject.org/files/ENCFF247FTP/@@download/ENCFF247FTP.bigWig GRCh38 released ENCFF429DDW bigWig signal p-value ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF950AXC, ENCFF988UCQ 1105373528 ENCODE Processing Pipeline 94b5003036c4814f7ca9e965fcf49f2f https://www.encodeproject.org/files/ENCFF429DDW/@@download/ENCFF429DDW.bigWig GRCh38 released ENCFF993CWG bigWig signal p-value ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF190EPQ, ENCFF396NXZ, ENCFF950AXC, ENCFF988UCQ 1989905673 ENCODE Processing Pipeline 5c59f7a9fbf10edd7c6a157e4e770bac https://www.encodeproject.org/files/ENCFF993CWG/@@download/ENCFF993CWG.bigWig GRCh38 released ENCFF617FIK bigWig fold change over control ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF190EPQ, ENCFF396NXZ 1199420716 ENCODE Processing Pipeline d0d9c2d726cd7588569e9124717e23b1 https://www.encodeproject.org/files/ENCFF617FIK/@@download/ENCFF617FIK.bigWig GRCh38 released ENCFF210VRU bigWig fold change over control ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF950AXC, ENCFF988UCQ 1081597387 ENCODE Processing Pipeline fc8d989ea458a5d9fd2414357c5720aa https://www.encodeproject.org/files/ENCFF210VRU/@@download/ENCFF210VRU.bigWig GRCh38 released ENCFF795JUV bigWig fold change over control ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF190EPQ, ENCFF396NXZ, ENCFF950AXC, ENCFF988UCQ 2048605489 ENCODE Processing Pipeline 2eb6aff5bed9e9949c8c8871d508c3e2 https://www.encodeproject.org/files/ENCFF795JUV/@@download/ENCFF795JUV.bigWig GRCh38 released ENCFF145NCM bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF190EPQ, ENCFF396NXZ 6028157 ENCODE Processing Pipeline 0c0685397aaec3568eba4f3b15487f2d https://www.encodeproject.org/files/ENCFF145NCM/@@download/ENCFF145NCM.bed.gz GRCh38 released ENCFF895VEE bigBed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF145NCM 11341590 ENCODE Processing Pipeline b428b425496b1bbc3b034739dd7a5a46 https://www.encodeproject.org/files/ENCFF895VEE/@@download/ENCFF895VEE.bigBed GRCh38 released ENCFF100BUM bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF950AXC, ENCFF988UCQ 5801561 ENCODE Processing Pipeline 612de489ab060b3eb0c86a97939730d3 https://www.encodeproject.org/files/ENCFF100BUM/@@download/ENCFF100BUM.bed.gz GRCh38 released ENCFF165KEI bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF190EPQ, ENCFF396NXZ, ENCFF950AXC, ENCFF988UCQ 7022024 ENCODE Processing Pipeline b8931e4883071aa27f651f718884bef3 https://www.encodeproject.org/files/ENCFF165KEI/@@download/ENCFF165KEI.bed.gz GRCh38 released ENCFF507VLN bigBed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF100BUM 11353858 ENCODE Processing Pipeline d5beec7c66a8f2f7576ae72cb6fd283e https://www.encodeproject.org/files/ENCFF507VLN/@@download/ENCFF507VLN.bigBed GRCh38 released ENCFF806FUC bigBed narrowPeak optimal idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF367TQC 383355 ENCODE Processing Pipeline c99ccdf64ebdd0139f2772867a53d231 https://www.encodeproject.org/files/ENCFF806FUC/@@download/ENCFF806FUC.bigBed GRCh38 released ENCFF726EVV bigBed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF165KEI 11405310 ENCODE Processing Pipeline bb91132876470e7fa5c922f0a1c3aa2b https://www.encodeproject.org/files/ENCFF726EVV/@@download/ENCFF726EVV.bigBed GRCh38 released ENCFF594RPH bed narrowPeak conservative idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF100BUM, ENCFF145NCM, ENCFF165KEI, ENCFF419RSJ 117700 ENCODE Processing Pipeline 740d0bef4ab0363dccd7e84c6f7a025f https://www.encodeproject.org/files/ENCFF594RPH/@@download/ENCFF594RPH.bed.gz GRCh38 released ENCFF367TQC bed narrowPeak optimal idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF100BUM, ENCFF145NCM, ENCFF165KEI, ENCFF419RSJ 168169 ENCODE Processing Pipeline 3175692922753f36ad75a6b95a594b51 https://www.encodeproject.org/files/ENCFF367TQC/@@download/ENCFF367TQC.bed.gz GRCh38 released ENCFF609TKP bigBed narrowPeak conservative idr thresholded peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF594RPH 247130 ENCODE Processing Pipeline 67d114a36caef1fa3ad876da59b1380d https://www.encodeproject.org/files/ENCFF609TKP/@@download/ENCFF609TKP.bigBed GRCh38 released ENCFF759CFO fastq reads ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 1 100 paired-ended 1 ENCFF498ERZ 2716725030 Michael Snyder, Stanford 8ce80fbf2cedd6ff9504fd7c3106d391 SRA:SRR5111515 https://www.encodeproject.org/files/ENCFF759CFO/@@download/ENCFF759CFO.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released file validation error, borderline replicate concordance mismatched file status ENCFF578AYF fastq reads ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 1 100 paired-ended 2 ENCFF611IXQ 5907002932 Michael Snyder, Stanford 72f3b2ee7265174c6e0de0c3a0878179 SRA:SRR5111514 https://www.encodeproject.org/files/ENCFF578AYF/@@download/ENCFF578AYF.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released file validation error, borderline replicate concordance mismatched file status ENCFF611IXQ fastq reads ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 1 100 paired-ended 1 ENCFF578AYF 5566421756 Michael Snyder, Stanford 2fe519264ccf190d4941b777cdc8acad SRA:SRR5111514 https://www.encodeproject.org/files/ENCFF611IXQ/@@download/ENCFF611IXQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released file validation error, borderline replicate concordance mismatched file status ENCFF498ERZ fastq reads ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 1 100 paired-ended 2 ENCFF759CFO 3041643464 Michael Snyder, Stanford 0e44f8930003dc9a024be4528d0e9e05 SRA:SRR5111515 https://www.encodeproject.org/files/ENCFF498ERZ/@@download/ENCFF498ERZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released file validation error, borderline replicate concordance mismatched file status ENCFF872RNF bam unfiltered alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 100 ENCFF498ERZ, ENCFF759CFO, ENCFF807MUK 5891189730 ENCODE Processing Pipeline 75886477645851767a7bac7514168a53 https://www.encodeproject.org/files/ENCFF872RNF/@@download/ENCFF872RNF.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF275NIA bam unfiltered alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 100 ENCFF498ERZ, ENCFF643CGH, ENCFF759CFO 5907401163 ENCODE Processing Pipeline f6912a7abc3ec71eda5979f8c601a903 https://www.encodeproject.org/files/ENCFF275NIA/@@download/ENCFF275NIA.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF513FMF bam unfiltered alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 100 ENCFF578AYF, ENCFF611IXQ, ENCFF643CGH 10571538022 ENCODE Processing Pipeline c5b055e04801ddccf96233e535780015 https://www.encodeproject.org/files/ENCFF513FMF/@@download/ENCFF513FMF.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF064TUA bam unfiltered alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 100 ENCFF578AYF, ENCFF611IXQ, ENCFF807MUK 10554538177 ENCODE Processing Pipeline 8391cc1e14473711a948d97d1117993a https://www.encodeproject.org/files/ENCFF064TUA/@@download/ENCFF064TUA.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF716EKQ bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 100 ENCFF498ERZ, ENCFF759CFO, ENCFF807MUK 4589205014 ENCODE Processing Pipeline e637fb59209cd0c649794ad7f6d72926 https://www.encodeproject.org/files/ENCFF716EKQ/@@download/ENCFF716EKQ.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF920NRF bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 100 ENCFF498ERZ, ENCFF643CGH, ENCFF759CFO 4596330079 ENCODE Processing Pipeline de50bb9a95156eed50002d2af2a8674e https://www.encodeproject.org/files/ENCFF920NRF/@@download/ENCFF920NRF.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF363DXD bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 100 ENCFF578AYF, ENCFF611IXQ, ENCFF643CGH 8502984807 ENCODE Processing Pipeline a6bec87cbb657eea65ed45634cef2219 https://www.encodeproject.org/files/ENCFF363DXD/@@download/ENCFF363DXD.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF282DZQ bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 100 ENCFF578AYF, ENCFF611IXQ, ENCFF807MUK 8488653283 ENCODE Processing Pipeline 6e26cfdaf4d347788e1cb901245e3812 https://www.encodeproject.org/files/ENCFF282DZQ/@@download/ENCFF282DZQ.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF580YBE bigWig signal p-value ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 1590676298 ENCODE Processing Pipeline b5685b285a99508418fd55de7869da83 https://www.encodeproject.org/files/ENCFF580YBE/@@download/ENCFF580YBE.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF898PWA bigWig signal p-value ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF282DZQ, ENCFF447KVS, ENCFF823USR 2289215417 ENCODE Processing Pipeline 550698dfec4bf2f088b33788ab484d69 https://www.encodeproject.org/files/ENCFF898PWA/@@download/ENCFF898PWA.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF694RUS bigWig signal p-value ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF282DZQ, ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 2233189418 ENCODE Processing Pipeline c1c47c4e2ddd2b7194736babe981c238 https://www.encodeproject.org/files/ENCFF694RUS/@@download/ENCFF694RUS.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF239IQR bigWig fold change over control ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF282DZQ, ENCFF447KVS, ENCFF823USR 2364817087 ENCODE Processing Pipeline 7972a31b9e074acc62d5f8a1f14b9e91 https://www.encodeproject.org/files/ENCFF239IQR/@@download/ENCFF239IQR.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF195HOH bigWig fold change over control ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 1745489200 ENCODE Processing Pipeline 5effb1826613dfc2f64453d574892699 https://www.encodeproject.org/files/ENCFF195HOH/@@download/ENCFF195HOH.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF674GKW bigWig fold change over control ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF282DZQ, ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 2779026299 ENCODE Processing Pipeline 2b86501da2d4bbc213cd12a13e3d4d82 https://www.encodeproject.org/files/ENCFF674GKW/@@download/ENCFF674GKW.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF824KUU bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 6934811 ENCODE Processing Pipeline 764ae30459dbbba0d0cb27fefa7a860f https://www.encodeproject.org/files/ENCFF824KUU/@@download/ENCFF824KUU.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF118LCE bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF282DZQ, ENCFF447KVS, ENCFF823USR 7261148 ENCODE Processing Pipeline b100de3db0800cd9acd176cfee1aef44 https://www.encodeproject.org/files/ENCFF118LCE/@@download/ENCFF118LCE.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF988JBW bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF282DZQ, ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 7444985 ENCODE Processing Pipeline f8d76740249f2351a3eabb493d20e747 https://www.encodeproject.org/files/ENCFF988JBW/@@download/ENCFF988JBW.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF551MAU bigBed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF824KUU 11116652 ENCODE Processing Pipeline a01355fb13a2255fe6597da0bc9da5c8 https://www.encodeproject.org/files/ENCFF551MAU/@@download/ENCFF551MAU.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF823WOM bigBed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF118LCE 11114964 ENCODE Processing Pipeline e12ca100ffff78d1e3cbd98efae0e524 https://www.encodeproject.org/files/ENCFF823WOM/@@download/ENCFF823WOM.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF012UPG bigBed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF988JBW 13327285 ENCODE Processing Pipeline c9abccaa49c1111d26afc3182363cb73 https://www.encodeproject.org/files/ENCFF012UPG/@@download/ENCFF012UPG.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF675YZS bed narrowPeak conservative idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF001TDO, ENCFF118LCE, ENCFF824KUU, ENCFF988JBW 37534 ENCODE Processing Pipeline c0ec8d224e497145a82184e6010d5206 https://www.encodeproject.org/files/ENCFF675YZS/@@download/ENCFF675YZS.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF083JGY bigBed narrowPeak conservative idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF724BUZ 130721 ENCODE Processing Pipeline 9ef7e22e3a25a72efc9a8b1242de7949 https://www.encodeproject.org/files/ENCFF083JGY/@@download/ENCFF083JGY.bigBed hg19 released file validation error, borderline replicate concordance mismatched status, mismatched file status ENCFF278ODX bed narrowPeak optimal idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF001TDO, ENCFF118LCE, ENCFF824KUU, ENCFF988JBW 59006 ENCODE Processing Pipeline d80417dac83b096bac414a968ce1a745 https://www.encodeproject.org/files/ENCFF278ODX/@@download/ENCFF278ODX.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF852ISC bigBed narrowPeak optimal idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF921RFH 164999 ENCODE Processing Pipeline e14d7bf159394f39b1d884e4059aedb7 https://www.encodeproject.org/files/ENCFF852ISC/@@download/ENCFF852ISC.bigBed hg19 released file validation error, borderline replicate concordance mismatched status, mismatched file status ENCFF879IKI bigWig signal p-value ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF191XYH, ENCFF363DXD, ENCFF746SKT 2291740695 ENCODE Processing Pipeline cab8328326733e76be942d0cae6f0291 https://www.encodeproject.org/files/ENCFF879IKI/@@download/ENCFF879IKI.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF670TUA bigWig signal p-value ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF920NRF 1382890660 ENCODE Processing Pipeline d668225826ed665d2dee4cc3377a5122 https://www.encodeproject.org/files/ENCFF670TUA/@@download/ENCFF670TUA.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF488HAV bigWig signal p-value ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF191XYH, ENCFF363DXD, ENCFF746SKT, ENCFF920NRF 2250731914 ENCODE Processing Pipeline 0087418fed94c04249bf0bb2fbb580a7 https://www.encodeproject.org/files/ENCFF488HAV/@@download/ENCFF488HAV.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF938KWK bigWig fold change over control ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF920NRF 1687594737 ENCODE Processing Pipeline 635ea124c15ee898f69adc72231a77b5 https://www.encodeproject.org/files/ENCFF938KWK/@@download/ENCFF938KWK.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF498KTC bigWig fold change over control ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF191XYH, ENCFF363DXD, ENCFF746SKT, ENCFF920NRF 2799449430 ENCODE Processing Pipeline f45907093ed90d94b4148fec4f8613cb https://www.encodeproject.org/files/ENCFF498KTC/@@download/ENCFF498KTC.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF140XNR bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF191XYH, ENCFF363DXD, ENCFF746SKT, ENCFF920NRF 7452234 ENCODE Processing Pipeline e11cb99e1d120038256b1d47e703fb15 https://www.encodeproject.org/files/ENCFF140XNR/@@download/ENCFF140XNR.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF307GIY bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF191XYH, ENCFF363DXD, ENCFF746SKT 7231942 ENCODE Processing Pipeline 4bab0eb2a736aa79495b82f5d68dc5dc https://www.encodeproject.org/files/ENCFF307GIY/@@download/ENCFF307GIY.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF711ITV bigBed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF307GIY 11139212 ENCODE Processing Pipeline 47707a3841f21f8d593e7b9d3d3ee153 https://www.encodeproject.org/files/ENCFF711ITV/@@download/ENCFF711ITV.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF073LMT bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF920NRF 6822927 ENCODE Processing Pipeline 2b69708bff0e5b80dc1a52bc46ead093 https://www.encodeproject.org/files/ENCFF073LMT/@@download/ENCFF073LMT.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF863DPS bigBed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF073LMT 11132679 ENCODE Processing Pipeline 85ac209a9e7bb4f9a433d73ee34710ad https://www.encodeproject.org/files/ENCFF863DPS/@@download/ENCFF863DPS.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF784GFL bigBed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF140XNR 13354390 ENCODE Processing Pipeline 53eb046f67c7ff9a6f195541dd19e1b4 https://www.encodeproject.org/files/ENCFF784GFL/@@download/ENCFF784GFL.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF676SJR bigBed narrowPeak optimal idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF441UHA 163671 ENCODE Processing Pipeline 650a60b1e3564b60f0a98e264192ba70 https://www.encodeproject.org/files/ENCFF676SJR/@@download/ENCFF676SJR.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF553NBH bed narrowPeak conservative idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF073LMT, ENCFF140XNR, ENCFF307GIY, ENCFF419RSJ 36262 ENCODE Processing Pipeline 9b1bf8e120761478fa5acd8c072775de https://www.encodeproject.org/files/ENCFF553NBH/@@download/ENCFF553NBH.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF441UHA bed narrowPeak optimal idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF073LMT, ENCFF140XNR, ENCFF307GIY, ENCFF419RSJ 56765 ENCODE Processing Pipeline 6255d4f7979998b429371c9dc2a453eb https://www.encodeproject.org/files/ENCFF441UHA/@@download/ENCFF441UHA.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF720NMK bigBed narrowPeak conservative idr thresholded peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1, 2 ENCFF553NBH 130810 ENCODE Processing Pipeline 9b478b9d7fc8549bf48838bcfb6e27f8 https://www.encodeproject.org/files/ENCFF720NMK/@@download/ENCFF720NMK.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF320OMH bigWig fold change over control ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF191XYH, ENCFF363DXD, ENCFF746SKT 2370321706 ENCODE Processing Pipeline 0fbcabfe990df7ddc91e8939f5708b59 https://www.encodeproject.org/files/ENCFF320OMH/@@download/ENCFF320OMH.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF008YRO fastq reads ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 single-ended 1776126038 Bradley Bernstein, Broad 3745620c3d00e3ceeafbda59f2abf831 https://www.encodeproject.org/files/ENCFF008YRO/@@download/ENCFF008YRO.fastq.gz Illumina HiSeq 2000 /files/ENCFF418LZN/, /files/ENCFF706DCA/, /files/ENCFF753ZNI/, /files/ENCFF775ENL/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF442SBA fastq reads ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 76 single-ended 2478054154 Bradley Bernstein, Broad aeba102b07bf0e4a1fab151901e0b21f https://www.encodeproject.org/files/ENCFF442SBA/@@download/ENCFF442SBA.fastq.gz Illumina HiSeq 2500 /files/ENCFF630WNF/, /files/ENCFF802ZSZ/, /files/ENCFF965KVJ/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF395PMJ bam unfiltered alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF442SBA, ENCFF807MUK 1834550760 ENCODE Processing Pipeline c581d07061765cb451da2340a394db3e https://www.encodeproject.org/files/ENCFF395PMJ/@@download/ENCFF395PMJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF751LWI bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF008YRO, ENCFF807MUK 849464128 ENCODE Processing Pipeline 4a0f82bac6b7479244504730802ce06f https://www.encodeproject.org/files/ENCFF751LWI/@@download/ENCFF751LWI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF755SZH bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF442SBA, ENCFF807MUK 1027149820 ENCODE Processing Pipeline 58d34272bbc329e9a0609301e3a3b0fc https://www.encodeproject.org/files/ENCFF755SZH/@@download/ENCFF755SZH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF894JOS bam unfiltered alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF008YRO, ENCFF643CGH 1378193588 ENCODE Processing Pipeline e07dd0ec00247d2f2cbd94660626361a https://www.encodeproject.org/files/ENCFF894JOS/@@download/ENCFF894JOS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF427SHL bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF008YRO, ENCFF643CGH 849069726 ENCODE Processing Pipeline dc5020d1350834204d487af7fcbc4272 https://www.encodeproject.org/files/ENCFF427SHL/@@download/ENCFF427SHL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF205TCG bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF442SBA, ENCFF643CGH 1026723099 ENCODE Processing Pipeline db5ce0977713cfec1c522903ee6576f2 https://www.encodeproject.org/files/ENCFF205TCG/@@download/ENCFF205TCG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF136DUB bam unfiltered alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF008YRO, ENCFF807MUK 1369580544 ENCODE Processing Pipeline 38e151b181822edb5e2883f882ed4835 https://www.encodeproject.org/files/ENCFF136DUB/@@download/ENCFF136DUB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF512SIM bam unfiltered alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF442SBA, ENCFF643CGH 1846707641 ENCODE Processing Pipeline 058fb6b9bcb3b6339be3fcb27b510f47 https://www.encodeproject.org/files/ENCFF512SIM/@@download/ENCFF512SIM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF107IVH bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF552AOU, ENCFF751LWI, ENCFF755SZH, ENCFF938OPX 6128973 ENCODE Processing Pipeline 639ddf552e5a2925d7eec23b43dcc020 https://www.encodeproject.org/files/ENCFF107IVH/@@download/ENCFF107IVH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF631FLB bigBed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF407UZQ 11511932 ENCODE Processing Pipeline cac0128ea699df628f7964a8f808269e https://www.encodeproject.org/files/ENCFF631FLB/@@download/ENCFF631FLB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF101PZB bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF205TCG, ENCFF427SHL, ENCFF711NHN, ENCFF871BGG 6079769 ENCODE Processing Pipeline 0b29a91156e6236517b8894af157db64 https://www.encodeproject.org/files/ENCFF101PZB/@@download/ENCFF101PZB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF072SMQ bigBed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF101PZB 11449366 ENCODE Processing Pipeline 45c74a209e11524ea561896b57ade4a9 https://www.encodeproject.org/files/ENCFF072SMQ/@@download/ENCFF072SMQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF941ZLF bed narrowPeak optimal idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF107IVH, ENCFF262SHR, ENCFF407UZQ 21974 ENCODE Processing Pipeline 8ab509e27ba0756df3d37fedaf0bc99d https://www.encodeproject.org/files/ENCFF941ZLF/@@download/ENCFF941ZLF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF813GTK bigWig signal p-value ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF205TCG, ENCFF427SHL, ENCFF711NHN, ENCFF871BGG 1478806450 ENCODE Processing Pipeline 2d4bdf026ed9f897de25f621ab6d2255 https://www.encodeproject.org/files/ENCFF813GTK/@@download/ENCFF813GTK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF310DYP bigWig fold change over control ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF552AOU, ENCFF751LWI, ENCFF755SZH, ENCFF938OPX 1497991961 ENCODE Processing Pipeline 73a085b4879899473e8500a028ef9eb3 https://www.encodeproject.org/files/ENCFF310DYP/@@download/ENCFF310DYP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF823AHG bigBed narrowPeak conservative idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF777SHY 75112 ENCODE Processing Pipeline ab727f91dad5695c8341aec61d7ecbd3 https://www.encodeproject.org/files/ENCFF823AHG/@@download/ENCFF823AHG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF694MSN bigBed narrowPeak optimal idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF941ZLF 80306 ENCODE Processing Pipeline 5f048089384768a8bb7af52fce3d5269 https://www.encodeproject.org/files/ENCFF694MSN/@@download/ENCFF694MSN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF412ZLP bigWig signal p-value ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF552AOU, ENCFF755SZH, ENCFF938OPX 1137812881 ENCODE Processing Pipeline 5e75e8d9ff9ff0e53f9abad9d26900c8 https://www.encodeproject.org/files/ENCFF412ZLP/@@download/ENCFF412ZLP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF797ODU bigWig signal p-value ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF552AOU, ENCFF751LWI, ENCFF755SZH, ENCFF938OPX 1538661445 ENCODE Processing Pipeline 7d296e5b16dba67562c94bed225da0ed https://www.encodeproject.org/files/ENCFF797ODU/@@download/ENCFF797ODU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF201IVL bigBed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF262SHR 11556725 ENCODE Processing Pipeline 9103e94d0bc862beee02cc38941331f3 https://www.encodeproject.org/files/ENCFF201IVL/@@download/ENCFF201IVL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF463HLZ bigWig signal p-value ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF205TCG, ENCFF711NHN, ENCFF871BGG 1199415639 ENCODE Processing Pipeline 34047412306a804111eb77855c2e5d89 https://www.encodeproject.org/files/ENCFF463HLZ/@@download/ENCFF463HLZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF619DFA bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF427SHL, ENCFF711NHN, ENCFF871BGG 5215381 ENCODE Processing Pipeline 83b9300b92a7382ea07b3d4dce8d400b https://www.encodeproject.org/files/ENCFF619DFA/@@download/ENCFF619DFA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF485BAD bigBed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF619DFA 11513153 ENCODE Processing Pipeline 5d3890ece268585ad97133e504d9987b https://www.encodeproject.org/files/ENCFF485BAD/@@download/ENCFF485BAD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF262JHL bigBed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF468OHC 11560155 ENCODE Processing Pipeline 1000d19bcb83e4b3f6b432f01635c675 https://www.encodeproject.org/files/ENCFF262JHL/@@download/ENCFF262JHL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF701VAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF595CTW 74456 ENCODE Processing Pipeline 09d23e6bd7e3be6da0aef1f9a2c65f86 https://www.encodeproject.org/files/ENCFF701VAQ/@@download/ENCFF701VAQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF665GHF bigBed narrowPeak optimal idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF956HAS 80501 ENCODE Processing Pipeline 14dbcafe418100abb8a4eaaac350047b https://www.encodeproject.org/files/ENCFF665GHF/@@download/ENCFF665GHF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF309MDA bigWig signal p-value ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF552AOU, ENCFF751LWI, ENCFF938OPX 1114314987 ENCODE Processing Pipeline c2f33c5f3c0f48b2a2b521f1f704e230 https://www.encodeproject.org/files/ENCFF309MDA/@@download/ENCFF309MDA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF753QRT bigWig fold change over control ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF552AOU, ENCFF751LWI, ENCFF938OPX 980178715 ENCODE Processing Pipeline 1cb4e02a4d647ad75b13f27ad2238827 https://www.encodeproject.org/files/ENCFF753QRT/@@download/ENCFF753QRT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF891FZF bigWig fold change over control ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF552AOU, ENCFF755SZH, ENCFF938OPX 1057377948 ENCODE Processing Pipeline df8772722b34096d24478ba13d04de42 https://www.encodeproject.org/files/ENCFF891FZF/@@download/ENCFF891FZF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF407UZQ bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF552AOU, ENCFF751LWI, ENCFF938OPX 5220701 ENCODE Processing Pipeline 6bc24ca663a7f8480eb8455c6c289f9a https://www.encodeproject.org/files/ENCFF407UZQ/@@download/ENCFF407UZQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF262SHR bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF552AOU, ENCFF755SZH, ENCFF938OPX 5263028 ENCODE Processing Pipeline dd401ee2de7039f1bc6261885f376413 https://www.encodeproject.org/files/ENCFF262SHR/@@download/ENCFF262SHR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF250KPR bigBed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF107IVH 11435813 ENCODE Processing Pipeline 62ff73a903c7ac8dcadb854b4fb4f101 https://www.encodeproject.org/files/ENCFF250KPR/@@download/ENCFF250KPR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF777SHY bed narrowPeak conservative idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF107IVH, ENCFF262SHR, ENCFF407UZQ 18723 ENCODE Processing Pipeline ed0bc4a03dc6c2737e7e50aef1d68744 https://www.encodeproject.org/files/ENCFF777SHY/@@download/ENCFF777SHY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF468OHC bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF205TCG, ENCFF711NHN, ENCFF871BGG 5255826 ENCODE Processing Pipeline 2ba47fc3552d5eba4069ac5c44d393f8 https://www.encodeproject.org/files/ENCFF468OHC/@@download/ENCFF468OHC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF956HAS bed narrowPeak optimal idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF101PZB, ENCFF419RSJ, ENCFF468OHC, ENCFF619DFA 21678 ENCODE Processing Pipeline b3133fb1f56791d7876f2a21b2efe0e9 https://www.encodeproject.org/files/ENCFF956HAS/@@download/ENCFF956HAS.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF889URQ bigWig signal p-value ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF427SHL, ENCFF711NHN, ENCFF871BGG 1039416056 ENCODE Processing Pipeline 180b78c091cb3c620b3d24d969fc3d8e https://www.encodeproject.org/files/ENCFF889URQ/@@download/ENCFF889URQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF583UBB bigWig fold change over control ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF427SHL, ENCFF711NHN, ENCFF871BGG 981440935 ENCODE Processing Pipeline e77d26aeb942fd8a439b758d19ccfd0a https://www.encodeproject.org/files/ENCFF583UBB/@@download/ENCFF583UBB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF868RAK bigWig fold change over control ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF205TCG, ENCFF711NHN, ENCFF871BGG 1063186351 ENCODE Processing Pipeline 759573cdd39448c0715c989805e2bd98 https://www.encodeproject.org/files/ENCFF868RAK/@@download/ENCFF868RAK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF288NSX bigWig fold change over control ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF205TCG, ENCFF427SHL, ENCFF711NHN, ENCFF871BGG 1494932922 ENCODE Processing Pipeline cb23e50b0b70ecbfdd35ba6ad0f3183d https://www.encodeproject.org/files/ENCFF288NSX/@@download/ENCFF288NSX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF595CTW bed narrowPeak conservative idr thresholded peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF101PZB, ENCFF419RSJ, ENCFF468OHC, ENCFF619DFA 17821 ENCODE Processing Pipeline c5c94a91eb68bcdc3680207606861ff4 https://www.encodeproject.org/files/ENCFF595CTW/@@download/ENCFF595CTW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF547FMQ fastq reads ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF706PQV 2582808663 Michael Snyder, Stanford c66583373860539530a16ec81603fef3 SRA:SRR6213599 https://www.encodeproject.org/files/ENCFF547FMQ/@@download/ENCFF547FMQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF868HAY/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF706PQV fastq reads ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF547FMQ 2510022281 Michael Snyder, Stanford bd961e6d5bbdfea9a013020e683207c5 SRA:SRR6213599 https://www.encodeproject.org/files/ENCFF706PQV/@@download/ENCFF706PQV.fastq.gz Illumina HiSeq 4000 /files/ENCFF747GMM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF044AJK bam unfiltered alignments ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF547FMQ, ENCFF706PQV, ENCFF807MUK 4665975046 ENCODE Processing Pipeline 8677c0e23280cd9bf8fefcc6e77f373f https://www.encodeproject.org/files/ENCFF044AJK/@@download/ENCFF044AJK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF037HFH bam alignments ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF547FMQ, ENCFF706PQV, ENCFF807MUK 3406553166 ENCODE Processing Pipeline dbc8aba40f0b649d44aa4732540a08ab https://www.encodeproject.org/files/ENCFF037HFH/@@download/ENCFF037HFH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF776EYK bam unfiltered alignments ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF547FMQ, ENCFF643CGH, ENCFF706PQV 4671228191 ENCODE Processing Pipeline e844823803465729123652425a5a62f7 https://www.encodeproject.org/files/ENCFF776EYK/@@download/ENCFF776EYK.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF590TPY bam alignments ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF547FMQ, ENCFF643CGH, ENCFF706PQV 3410169536 ENCODE Processing Pipeline 55862d4064b0721b4f42f140fcc7dc14 https://www.encodeproject.org/files/ENCFF590TPY/@@download/ENCFF590TPY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF510HTN bigBed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF513GHF 13965680 ENCODE Processing Pipeline 394f247a6cf5b0437b99d8aaedea548a https://www.encodeproject.org/files/ENCFF510HTN/@@download/ENCFF510HTN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF627GAM bigWig signal p-value ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037HFH, ENCFF976VAT 1364026098 ENCODE Processing Pipeline 24e216393f1f8073f14f204e13960bf1 https://www.encodeproject.org/files/ENCFF627GAM/@@download/ENCFF627GAM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF025TIO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF282BOE 1072344 ENCODE Processing Pipeline 34208134fceea63f2a0eb4bb13fedf12 https://www.encodeproject.org/files/ENCFF025TIO/@@download/ENCFF025TIO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF872ALM bigWig fold change over control ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037HFH, ENCFF976VAT 1298593824 ENCODE Processing Pipeline 395cd06a1c0493fb13ced9beb1acdba8 https://www.encodeproject.org/files/ENCFF872ALM/@@download/ENCFF872ALM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF282BOE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF513GHF 592518 ENCODE Processing Pipeline e7ce7c713fa139206baef0195a264860 https://www.encodeproject.org/files/ENCFF282BOE/@@download/ENCFF282BOE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF513GHF bed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037HFH, ENCFF976VAT 6543360 ENCODE Processing Pipeline 624f613eb64f5610d48fe6d1dbd7affe https://www.encodeproject.org/files/ENCFF513GHF/@@download/ENCFF513GHF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF826JTX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF179YWB 1082438 ENCODE Processing Pipeline 21a84c443dd7ed2c6bfc5e7737f091c6 https://www.encodeproject.org/files/ENCFF826JTX/@@download/ENCFF826JTX.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF005HEC bigWig signal p-value ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF242TYP, ENCFF590TPY 1194611553 ENCODE Processing Pipeline 74b53161ae9c7fb6eea0d02fcff43db9 https://www.encodeproject.org/files/ENCFF005HEC/@@download/ENCFF005HEC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF815HSK bed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF242TYP, ENCFF590TPY 6564382 ENCODE Processing Pipeline b08eb40b373de3706608f2dd3a694622 https://www.encodeproject.org/files/ENCFF815HSK/@@download/ENCFF815HSK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF994ERU bigWig fold change over control ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF242TYP, ENCFF590TPY 1297743161 ENCODE Processing Pipeline c1753e410a1b434a8c32f89094fbd94d https://www.encodeproject.org/files/ENCFF994ERU/@@download/ENCFF994ERU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF195EJT bigBed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF815HSK 14003047 ENCODE Processing Pipeline 3779230c66d30e5c3a6a0b131d6861bf https://www.encodeproject.org/files/ENCFF195EJT/@@download/ENCFF195EJT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF179YWB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF815HSK 598611 ENCODE Processing Pipeline 10836b454745d0f8c7ed0d856c50cec5 https://www.encodeproject.org/files/ENCFF179YWB/@@download/ENCFF179YWB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF932MLQ bam unfiltered alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF253CXQ, ENCFF381IRT, ENCFF807MUK 2035961614 ENCODE Processing Pipeline 47552479d8e25f445a30a7b17c3e9e5a https://www.encodeproject.org/files/ENCFF932MLQ/@@download/ENCFF932MLQ.bam hg19 released missing genetic modification characterization ENCFF352NBT bam unfiltered alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF429QSN, ENCFF645REX, ENCFF807MUK 1850751821 ENCODE Processing Pipeline c6f7c6906744cbc11b59e1d838998d01 https://www.encodeproject.org/files/ENCFF352NBT/@@download/ENCFF352NBT.bam hg19 released missing genetic modification characterization ENCFF253CXQ fastq reads ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 874779324 Kevin White, UChicago d42078ff23b8d421bf9ea614590a2cec SRA:SRR6212947 https://www.encodeproject.org/files/ENCFF253CXQ/@@download/ENCFF253CXQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF446PVB/, /files/ENCFF455LJL/ released missing genetic modification characterization ENCFF645REX fastq reads ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 902941253 Kevin White, UChicago 7771db2acdcb992310968f860803486f SRA:SRR6212945 https://www.encodeproject.org/files/ENCFF645REX/@@download/ENCFF645REX.fastq.gz Illumina HiSeq 2000 /files/ENCFF446PVB/, /files/ENCFF455LJL/ released missing genetic modification characterization ENCFF381IRT fastq reads ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1131044022 Kevin White, UChicago a5e6eafe8306ac74e4f3285c9a732a24 SRA:SRR6212948 https://www.encodeproject.org/files/ENCFF381IRT/@@download/ENCFF381IRT.fastq.gz Illumina HiSeq 2500 /files/ENCFF446PVB/, /files/ENCFF455LJL/ released missing genetic modification characterization ENCFF429QSN fastq reads ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 912692057 Kevin White, UChicago 3d6473a54b7820592d1e07819d14f6b6 SRA:SRR6212946 https://www.encodeproject.org/files/ENCFF429QSN/@@download/ENCFF429QSN.fastq.gz Illumina HiSeq 2500 /files/ENCFF446PVB/, /files/ENCFF455LJL/ released missing genetic modification characterization ENCFF541WBX bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF253CXQ, ENCFF381IRT, ENCFF807MUK 1506656284 ENCODE Processing Pipeline 8882cf9531b4d748d7b57d80e7d4a72d https://www.encodeproject.org/files/ENCFF541WBX/@@download/ENCFF541WBX.bam hg19 released missing genetic modification characterization ENCFF084TWW bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF429QSN, ENCFF645REX, ENCFF807MUK 1366860714 ENCODE Processing Pipeline 6dd909888cd14107694a1e270d5063b4 https://www.encodeproject.org/files/ENCFF084TWW/@@download/ENCFF084TWW.bam hg19 released missing genetic modification characterization ENCFF111LCG bigWig signal p-value ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQF, ENCFF541WBX 753075726 ENCODE Processing Pipeline 48e29f75ffd9d566dd4d2797cffc2c2b https://www.encodeproject.org/files/ENCFF111LCG/@@download/ENCFF111LCG.bigWig hg19 released missing genetic modification characterization ENCFF159BJW bigWig signal p-value ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF084TWW, ENCFF449ZQF 712443844 ENCODE Processing Pipeline fd7e2cbc867682f866624d4cf63a6aae https://www.encodeproject.org/files/ENCFF159BJW/@@download/ENCFF159BJW.bigWig hg19 released missing genetic modification characterization ENCFF495CRT bigWig signal p-value ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF084TWW, ENCFF449ZQF, ENCFF541WBX 762864408 ENCODE Processing Pipeline 861cf5ccecf08b04afd16b3713b09ea6 https://www.encodeproject.org/files/ENCFF495CRT/@@download/ENCFF495CRT.bigWig hg19 released missing genetic modification characterization ENCFF682TPV bigWig fold change over control ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF084TWW, ENCFF449ZQF 704496180 ENCODE Processing Pipeline f24ade44b23d595ba3fb9952e2742628 https://www.encodeproject.org/files/ENCFF682TPV/@@download/ENCFF682TPV.bigWig hg19 released missing genetic modification characterization ENCFF236LWZ bigWig fold change over control ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQF, ENCFF541WBX 746033008 ENCODE Processing Pipeline 1b124833cf0962aaece8018c784666e9 https://www.encodeproject.org/files/ENCFF236LWZ/@@download/ENCFF236LWZ.bigWig hg19 released missing genetic modification characterization ENCFF554DIU bigWig fold change over control ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF084TWW, ENCFF449ZQF, ENCFF541WBX 1108199497 ENCODE Processing Pipeline d3b39069c31f581b1f3a005b18984c8e https://www.encodeproject.org/files/ENCFF554DIU/@@download/ENCFF554DIU.bigWig hg19 released missing genetic modification characterization ENCFF877UDE bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF084TWW, ENCFF449ZQF 7097868 ENCODE Processing Pipeline 1f01fb0e9e35b80561efe31a723b097c https://www.encodeproject.org/files/ENCFF877UDE/@@download/ENCFF877UDE.bed.gz hg19 released missing genetic modification characterization ENCFF263WAY bigBed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF912QBK 12824993 ENCODE Processing Pipeline 41072e753a9928e5130e3a5feec820c1 https://www.encodeproject.org/files/ENCFF263WAY/@@download/ENCFF263WAY.bigBed hg19 released missing genetic modification characterization ENCFF862BHV bigBed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF877UDE 12243417 ENCODE Processing Pipeline 7c3c67c53ad34260d799d289e6a5f46c https://www.encodeproject.org/files/ENCFF862BHV/@@download/ENCFF862BHV.bigBed hg19 released missing genetic modification characterization ENCFF912QBK bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQF, ENCFF541WBX 6980795 ENCODE Processing Pipeline ec15f630d11debe6ea971d6126e6d6a1 https://www.encodeproject.org/files/ENCFF912QBK/@@download/ENCFF912QBK.bed.gz hg19 released missing genetic modification characterization ENCFF907RDS bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF084TWW, ENCFF449ZQF, ENCFF541WBX 7145428 ENCODE Processing Pipeline 0de3b8264eb4bebc43b82ec2422a9bc3 https://www.encodeproject.org/files/ENCFF907RDS/@@download/ENCFF907RDS.bed.gz hg19 released missing genetic modification characterization ENCFF631TRD bigBed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF907RDS 12444212 ENCODE Processing Pipeline 6c17eb264439e34fa91a7aaa709efd44 https://www.encodeproject.org/files/ENCFF631TRD/@@download/ENCFF631TRD.bigBed hg19 released missing genetic modification characterization ENCFF924JMI bam unfiltered alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF429QSN, ENCFF643CGH, ENCFF645REX 1855650078 ENCODE Processing Pipeline 3b0b6570d90394496e899deeb44d8b05 https://www.encodeproject.org/files/ENCFF924JMI/@@download/ENCFF924JMI.bam GRCh38 released missing genetic modification characterization ENCFF291ZZD bam unfiltered alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF253CXQ, ENCFF381IRT, ENCFF643CGH 2041430542 ENCODE Processing Pipeline b2fb539f23ff4fc0ccb01698911296e2 https://www.encodeproject.org/files/ENCFF291ZZD/@@download/ENCFF291ZZD.bam GRCh38 released missing genetic modification characterization ENCFF581AZU bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF429QSN, ENCFF643CGH, ENCFF645REX 1366161373 ENCODE Processing Pipeline 5f96fe857dd7a08040bfbf2f6817eb44 https://www.encodeproject.org/files/ENCFF581AZU/@@download/ENCFF581AZU.bam GRCh38 released missing genetic modification characterization ENCFF500HFO bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF253CXQ, ENCFF381IRT, ENCFF643CGH 1505923252 ENCODE Processing Pipeline 8cb541c3b2ed9c35903cf275e07465f5 https://www.encodeproject.org/files/ENCFF500HFO/@@download/ENCFF500HFO.bam GRCh38 released missing genetic modification characterization ENCFF213JFZ bigWig signal p-value ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF036ZLP, ENCFF581AZU 635609632 ENCODE Processing Pipeline ea15443d03a6788e77daabb0b9967783 https://www.encodeproject.org/files/ENCFF213JFZ/@@download/ENCFF213JFZ.bigWig GRCh38 released missing genetic modification characterization ENCFF377RNP bigWig signal p-value ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF036ZLP, ENCFF500HFO 755964114 ENCODE Processing Pipeline c5260f33844418a93cece171a93c5f4e https://www.encodeproject.org/files/ENCFF377RNP/@@download/ENCFF377RNP.bigWig GRCh38 released missing genetic modification characterization ENCFF828VGK bigWig fold change over control ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF036ZLP, ENCFF581AZU 702283100 ENCODE Processing Pipeline 8f42cf6f4f1533ff5603a1423a570833 https://www.encodeproject.org/files/ENCFF828VGK/@@download/ENCFF828VGK.bigWig GRCh38 released missing genetic modification characterization ENCFF400NLF bigWig signal p-value ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF036ZLP, ENCFF500HFO, ENCFF581AZU 756450036 ENCODE Processing Pipeline 706356791f121d755fb0b256d8d0adf2 https://www.encodeproject.org/files/ENCFF400NLF/@@download/ENCFF400NLF.bigWig GRCh38 released missing genetic modification characterization ENCFF887ADK bigWig fold change over control ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF036ZLP, ENCFF500HFO 749340200 ENCODE Processing Pipeline 62f303aa8b90c4513d40913f3976bc13 https://www.encodeproject.org/files/ENCFF887ADK/@@download/ENCFF887ADK.bigWig GRCh38 released missing genetic modification characterization ENCFF094CHG bigWig fold change over control ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF036ZLP, ENCFF500HFO, ENCFF581AZU 1095136008 ENCODE Processing Pipeline 49693d0f23cefc0314ebdf80468046bc https://www.encodeproject.org/files/ENCFF094CHG/@@download/ENCFF094CHG.bigWig GRCh38 released missing genetic modification characterization ENCFF841ZQQ bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF036ZLP, ENCFF581AZU 7128004 ENCODE Processing Pipeline 826f1a951220c3ac77efce9e36ea72f7 https://www.encodeproject.org/files/ENCFF841ZQQ/@@download/ENCFF841ZQQ.bed.gz GRCh38 released missing genetic modification characterization ENCFF485TYY bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF036ZLP, ENCFF500HFO, ENCFF581AZU 7125075 ENCODE Processing Pipeline b0b96acc2cfe84043baf8a6f0fd038f4 https://www.encodeproject.org/files/ENCFF485TYY/@@download/ENCFF485TYY.bed.gz GRCh38 released missing genetic modification characterization ENCFF170SAA bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF036ZLP, ENCFF500HFO 6902417 ENCODE Processing Pipeline 21db5386ed2abe867291b313c4f707e1 https://www.encodeproject.org/files/ENCFF170SAA/@@download/ENCFF170SAA.bed.gz GRCh38 released missing genetic modification characterization ENCFF599SGV bigBed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF841ZQQ 12353611 ENCODE Processing Pipeline 57bf09bb166b88a5270296c55f295430 https://www.encodeproject.org/files/ENCFF599SGV/@@download/ENCFF599SGV.bigBed GRCh38 released missing genetic modification characterization ENCFF744SJI bigBed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF170SAA 12827718 ENCODE Processing Pipeline 0cbd6cb0be9816517c2f1169cf6ffe22 https://www.encodeproject.org/files/ENCFF744SJI/@@download/ENCFF744SJI.bigBed GRCh38 released missing genetic modification characterization ENCFF425FAW bigBed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF485TYY 12439453 ENCODE Processing Pipeline f0c17452871ba058640244beb7aa8ec9 https://www.encodeproject.org/files/ENCFF425FAW/@@download/ENCFF425FAW.bigBed GRCh38 released missing genetic modification characterization ENCFF151FYK bed narrowPeak optimal idr thresholded peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF170SAA, ENCFF419RSJ, ENCFF485TYY, ENCFF841ZQQ 1038336 ENCODE Processing Pipeline 34f8bcf3bfb337549b4d8b50e7573a8d https://www.encodeproject.org/files/ENCFF151FYK/@@download/ENCFF151FYK.bed.gz GRCh38 released missing genetic modification characterization ENCFF595YQB bigBed narrowPeak optimal idr thresholded peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF151FYK 2042835 ENCODE Processing Pipeline 28a4f738d0f2fe375de2ac9e34d9f44f https://www.encodeproject.org/files/ENCFF595YQB/@@download/ENCFF595YQB.bigBed GRCh38 released missing genetic modification characterization ENCFF820EPO bigBed narrowPeak optimal idr thresholded peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF692PVV 1873946 ENCODE Processing Pipeline d6f1bd52cf27126eb1f2e79119f6c2fe https://www.encodeproject.org/files/ENCFF820EPO/@@download/ENCFF820EPO.bigBed hg19 released missing genetic modification characterization ENCFF692PVV bed narrowPeak optimal idr thresholded peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF877UDE, ENCFF907RDS, ENCFF912QBK 923866 ENCODE Processing Pipeline 04a0cb049ff73ba89ee706b1951ff137 https://www.encodeproject.org/files/ENCFF692PVV/@@download/ENCFF692PVV.bed.gz hg19 released missing genetic modification characterization ENCFF491JBV bam unfiltered alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF055TRX, ENCFF243CPL, ENCFF807MUK 2346317818 ENCODE Processing Pipeline 1c0a0686523b31870369124e406b6058 https://www.encodeproject.org/files/ENCFF491JBV/@@download/ENCFF491JBV.bam hg19 released missing genetic modification characterization ENCFF937PVO bam unfiltered alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF580YPG, ENCFF774QGH, ENCFF807MUK 1944816519 ENCODE Processing Pipeline 38183cb3f3c16b5a9a4a5b6cba39bfcb https://www.encodeproject.org/files/ENCFF937PVO/@@download/ENCFF937PVO.bam hg19 released missing genetic modification characterization ENCFF243CPL fastq reads ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 952116001 Kevin White, UChicago 52eba0e37d58ed84a0c70a699d8cdb33 SRA:SRR6214182 https://www.encodeproject.org/files/ENCFF243CPL/@@download/ENCFF243CPL.fastq.gz Illumina HiSeq 2500 /files/ENCFF459OWK/, /files/ENCFF500SYJ/ released missing genetic modification characterization ENCFF774QGH fastq reads ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 844751312 Kevin White, UChicago 803a25ad9836d6af894df654bcad96ef SRA:SRR6214184 https://www.encodeproject.org/files/ENCFF774QGH/@@download/ENCFF774QGH.fastq.gz Illumina HiSeq 2500 /files/ENCFF459OWK/, /files/ENCFF500SYJ/ released missing genetic modification characterization ENCFF055TRX fastq reads ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1270830253 Kevin White, UChicago d88d908c4393cf8fcbcb31d821dbb98c SRA:SRR6214183 https://www.encodeproject.org/files/ENCFF055TRX/@@download/ENCFF055TRX.fastq.gz Illumina HiSeq 2000 /files/ENCFF459OWK/, /files/ENCFF500SYJ/ released missing genetic modification characterization ENCFF580YPG fastq reads ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1040280174 Kevin White, UChicago 7a4d7d6272ef5821fbb02e5c3c7630b1 SRA:SRR6214185 https://www.encodeproject.org/files/ENCFF580YPG/@@download/ENCFF580YPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF459OWK/, /files/ENCFF500SYJ/ released missing genetic modification characterization ENCFF961GDC bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF580YPG, ENCFF774QGH, ENCFF807MUK 1380941915 ENCODE Processing Pipeline 6f628b2585e68ff9f6725e380d525c01 https://www.encodeproject.org/files/ENCFF961GDC/@@download/ENCFF961GDC.bam hg19 released missing genetic modification characterization ENCFF606YNV bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF055TRX, ENCFF243CPL, ENCFF807MUK 1736443460 ENCODE Processing Pipeline 699ada53dca8107d24c3a0a334c6cbfe https://www.encodeproject.org/files/ENCFF606YNV/@@download/ENCFF606YNV.bam hg19 released missing genetic modification characterization ENCFF426FAV bigWig signal p-value ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF129ZZR, ENCFF606YNV 791280499 ENCODE Processing Pipeline eb331c787af21a1080bdf72e1ca0e5f0 https://www.encodeproject.org/files/ENCFF426FAV/@@download/ENCFF426FAV.bigWig hg19 released missing genetic modification characterization ENCFF168XDR bigWig signal p-value ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF129ZZR, ENCFF961GDC 633124189 ENCODE Processing Pipeline 7202d9212b616e7d466b0e589be099c6 https://www.encodeproject.org/files/ENCFF168XDR/@@download/ENCFF168XDR.bigWig hg19 released missing genetic modification characterization ENCFF639AUE bigWig signal p-value ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF129ZZR, ENCFF606YNV, ENCFF961GDC 748620135 ENCODE Processing Pipeline cfcfc51eb4b996d4697e2b34d6717186 https://www.encodeproject.org/files/ENCFF639AUE/@@download/ENCFF639AUE.bigWig hg19 released missing genetic modification characterization ENCFF385OKH bigWig fold change over control ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF129ZZR, ENCFF606YNV 809062372 ENCODE Processing Pipeline dbd3bc30131ea7ac9eeaccfa441b1957 https://www.encodeproject.org/files/ENCFF385OKH/@@download/ENCFF385OKH.bigWig hg19 released missing genetic modification characterization ENCFF255ERO bigWig fold change over control ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF129ZZR, ENCFF961GDC 715835939 ENCODE Processing Pipeline 0d55c6d7cf60122e2c68d3ec7619b240 https://www.encodeproject.org/files/ENCFF255ERO/@@download/ENCFF255ERO.bigWig hg19 released missing genetic modification characterization ENCFF657ZPH bigWig fold change over control ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF129ZZR, ENCFF606YNV, ENCFF961GDC 1103197753 ENCODE Processing Pipeline 1798f7dce049a9fa9f809708d3c9db58 https://www.encodeproject.org/files/ENCFF657ZPH/@@download/ENCFF657ZPH.bigWig hg19 released missing genetic modification characterization ENCFF610XAF bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF129ZZR, ENCFF606YNV 7171179 ENCODE Processing Pipeline 6999350ac335a593e5c0587ad900d047 https://www.encodeproject.org/files/ENCFF610XAF/@@download/ENCFF610XAF.bed.gz hg19 released missing genetic modification characterization ENCFF799LYO bigBed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF610XAF 12548033 ENCODE Processing Pipeline c0d9d7d04bd3afa2416a3295d8ff2641 https://www.encodeproject.org/files/ENCFF799LYO/@@download/ENCFF799LYO.bigBed hg19 released missing genetic modification characterization ENCFF374WLL bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF129ZZR, ENCFF961GDC 7054215 ENCODE Processing Pipeline 967f0bbb6d85e93bba5900e6ed6d2cf1 https://www.encodeproject.org/files/ENCFF374WLL/@@download/ENCFF374WLL.bed.gz hg19 released missing genetic modification characterization ENCFF994BAN bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF129ZZR, ENCFF606YNV, ENCFF961GDC 7292790 ENCODE Processing Pipeline d715dcfd343638c0f4875ad654690277 https://www.encodeproject.org/files/ENCFF994BAN/@@download/ENCFF994BAN.bed.gz hg19 released missing genetic modification characterization ENCFF595QJE bigBed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF374WLL 12298841 ENCODE Processing Pipeline 13f8a3671d635578ce458abbd76d6449 https://www.encodeproject.org/files/ENCFF595QJE/@@download/ENCFF595QJE.bigBed hg19 released missing genetic modification characterization ENCFF981NYR bigBed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF994BAN 12428047 ENCODE Processing Pipeline 98e0ad54509e57dc43d02e974e4b0ac0 https://www.encodeproject.org/files/ENCFF981NYR/@@download/ENCFF981NYR.bigBed hg19 released missing genetic modification characterization ENCFF504GNL bam unfiltered alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF580YPG, ENCFF643CGH, ENCFF774QGH 1951446046 ENCODE Processing Pipeline 98380b7ef242b78e73fa05feb209e4a9 https://www.encodeproject.org/files/ENCFF504GNL/@@download/ENCFF504GNL.bam GRCh38 released missing genetic modification characterization ENCFF264TNB bam unfiltered alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF055TRX, ENCFF243CPL, ENCFF643CGH 2353756866 ENCODE Processing Pipeline d32dd623fbeccb06e331d037b85ff54e https://www.encodeproject.org/files/ENCFF264TNB/@@download/ENCFF264TNB.bam GRCh38 released missing genetic modification characterization ENCFF597WPX bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF580YPG, ENCFF643CGH, ENCFF774QGH 1380204496 ENCODE Processing Pipeline bf4104c87586ed05858471be4bd6fbdf https://www.encodeproject.org/files/ENCFF597WPX/@@download/ENCFF597WPX.bam GRCh38 released missing genetic modification characterization ENCFF856EXS bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF055TRX, ENCFF243CPL, ENCFF643CGH 1735659003 ENCODE Processing Pipeline 80e5d095cbf4624e065f7c1553b9b1c3 https://www.encodeproject.org/files/ENCFF856EXS/@@download/ENCFF856EXS.bam GRCh38 released missing genetic modification characterization ENCFF926SQK bigWig signal p-value ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF699KKU, ENCFF856EXS 792859971 ENCODE Processing Pipeline 658f2e7ebbfc3e9179e39dd262ba6c82 https://www.encodeproject.org/files/ENCFF926SQK/@@download/ENCFF926SQK.bigWig GRCh38 released missing genetic modification characterization ENCFF159LQW bigWig signal p-value ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF597WPX, ENCFF699KKU 630801811 ENCODE Processing Pipeline 77f97f8cf7baa95a20ac2a5e64f16f2d https://www.encodeproject.org/files/ENCFF159LQW/@@download/ENCFF159LQW.bigWig GRCh38 released missing genetic modification characterization ENCFF148YUY bigWig signal p-value ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF597WPX, ENCFF699KKU, ENCFF856EXS 762691604 ENCODE Processing Pipeline 595f8f028c95690fdf042922b6fca169 https://www.encodeproject.org/files/ENCFF148YUY/@@download/ENCFF148YUY.bigWig GRCh38 released missing genetic modification characterization ENCFF389LRA bigWig fold change over control ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF699KKU, ENCFF856EXS 810694908 ENCODE Processing Pipeline bc8083eef2db8fd4f120311f272e1fc7 https://www.encodeproject.org/files/ENCFF389LRA/@@download/ENCFF389LRA.bigWig GRCh38 released missing genetic modification characterization ENCFF674IUP bigWig fold change over control ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF597WPX, ENCFF699KKU 707109139 ENCODE Processing Pipeline 81eb03e202caf7223c2021002e8d6936 https://www.encodeproject.org/files/ENCFF674IUP/@@download/ENCFF674IUP.bigWig GRCh38 released missing genetic modification characterization ENCFF513ULH bigWig fold change over control ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF597WPX, ENCFF699KKU, ENCFF856EXS 1119740216 ENCODE Processing Pipeline a752bbdffa19c45968f32fb3f7e97075 https://www.encodeproject.org/files/ENCFF513ULH/@@download/ENCFF513ULH.bigWig GRCh38 released missing genetic modification characterization ENCFF503GGD bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF597WPX, ENCFF699KKU, ENCFF856EXS 7277012 ENCODE Processing Pipeline 814af0b566ca8c0167511a44b72b4b01 https://www.encodeproject.org/files/ENCFF503GGD/@@download/ENCFF503GGD.bed.gz GRCh38 released missing genetic modification characterization ENCFF741ZBS bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF699KKU, ENCFF856EXS 7089362 ENCODE Processing Pipeline 760c81a25c5058c1e7be71b39d5673de https://www.encodeproject.org/files/ENCFF741ZBS/@@download/ENCFF741ZBS.bed.gz GRCh38 released missing genetic modification characterization ENCFF749UHD bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF597WPX, ENCFF699KKU 6984469 ENCODE Processing Pipeline c702826f7689819915155aa2899f8b76 https://www.encodeproject.org/files/ENCFF749UHD/@@download/ENCFF749UHD.bed.gz GRCh38 released missing genetic modification characterization ENCFF242YQW bigBed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF741ZBS 12536643 ENCODE Processing Pipeline 3ebcb704d85b734ef6a078dbf53815aa https://www.encodeproject.org/files/ENCFF242YQW/@@download/ENCFF242YQW.bigBed GRCh38 released missing genetic modification characterization ENCFF284LYU bed narrowPeak conservative idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF503GGD, ENCFF741ZBS, ENCFF749UHD 670953 ENCODE Processing Pipeline dc744c53c76c7e3a9be9f2a76b9851d3 https://www.encodeproject.org/files/ENCFF284LYU/@@download/ENCFF284LYU.bed.gz GRCh38 released missing genetic modification characterization ENCFF014QUJ bigBed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF749UHD 12306140 ENCODE Processing Pipeline fd773987353a63ada89911475502ad82 https://www.encodeproject.org/files/ENCFF014QUJ/@@download/ENCFF014QUJ.bigBed GRCh38 released missing genetic modification characterization ENCFF789AXP bed narrowPeak optimal idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF503GGD, ENCFF741ZBS, ENCFF749UHD 816401 ENCODE Processing Pipeline a28872ad6becf37b3551dfc454e2ae70 https://www.encodeproject.org/files/ENCFF789AXP/@@download/ENCFF789AXP.bed.gz GRCh38 released missing genetic modification characterization ENCFF761COX bigBed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF503GGD 12439979 ENCODE Processing Pipeline 4826008d1450903368d602f0f3f0b3a2 https://www.encodeproject.org/files/ENCFF761COX/@@download/ENCFF761COX.bigBed GRCh38 released missing genetic modification characterization ENCFF273LYV bigBed narrowPeak conservative idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF284LYU 1551073 ENCODE Processing Pipeline 68dc9e192fb441489cddb6126f6be676 https://www.encodeproject.org/files/ENCFF273LYV/@@download/ENCFF273LYV.bigBed GRCh38 released missing genetic modification characterization ENCFF105SII bigBed narrowPeak optimal idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF789AXP 1847217 ENCODE Processing Pipeline 9d428820fc1439e95e5f3878db9b8721 https://www.encodeproject.org/files/ENCFF105SII/@@download/ENCFF105SII.bigBed GRCh38 released missing genetic modification characterization ENCFF978GHB bed narrowPeak conservative idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF374WLL, ENCFF610XAF, ENCFF994BAN 581418 ENCODE Processing Pipeline c21f4e72839e1631cf4753dbcd32d199 https://www.encodeproject.org/files/ENCFF978GHB/@@download/ENCFF978GHB.bed.gz hg19 released missing genetic modification characterization ENCFF338CYI bigBed narrowPeak optimal idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF254YOX 1373613 ENCODE Processing Pipeline ca516aa5ab25e140f5995ee8829a323a https://www.encodeproject.org/files/ENCFF338CYI/@@download/ENCFF338CYI.bigBed hg19 released missing genetic modification characterization ENCFF254YOX bed narrowPeak optimal idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF374WLL, ENCFF610XAF, ENCFF994BAN 707639 ENCODE Processing Pipeline f34791c66a2d02e2f42717a679cb9573 https://www.encodeproject.org/files/ENCFF254YOX/@@download/ENCFF254YOX.bed.gz hg19 released missing genetic modification characterization ENCFF053TNU bigBed narrowPeak conservative idr thresholded peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF978GHB 1166980 ENCODE Processing Pipeline 4114c557bc653c942f4bb0cd37c0706e https://www.encodeproject.org/files/ENCFF053TNU/@@download/ENCFF053TNU.bigBed hg19 released missing genetic modification characterization ENCFF000NCV bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NDF 841119021 Richard Myers, HAIB 64c8e4cae68a8392a2b3ef21b104ce79 https://www.encodeproject.org/files/ENCFF000NCV/@@download/ENCFF000NCV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NCW bigBed broadPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TSV 383562 Richard Myers, HAIB e082d2040e07d5470edbe3fdb77ecab3 https://www.encodeproject.org/files/ENCFF000NCW/@@download/ENCFF000NCW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NCX bigBed broadPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TSW 600370 Richard Myers, HAIB e1cbcf8daab98a3063b64ef30a24ed2e https://www.encodeproject.org/files/ENCFF000NCX/@@download/ENCFF000NCX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NCY bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NDH 1163407765 Richard Myers, HAIB 7e20947c9f615df7e4258a5e55f62bf6 https://www.encodeproject.org/files/ENCFF000NCY/@@download/ENCFF000NCY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NCZ bigWig raw signal ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 12452250 Richard Myers, HAIB 8433ddbb571bbcc0a8bb29e8691479cd https://www.encodeproject.org/files/ENCFF000NCZ/@@download/ENCFF000NCZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NDB bigWig raw signal ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 24240076 Richard Myers, HAIB 25e1c5aae7c33b1e0b513e9ebb60adf4 https://www.encodeproject.org/files/ENCFF000NDB/@@download/ENCFF000NDB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NDF fastq reads ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 36 single-ended 829627509 Richard Myers, HAIB ed3261c5637d337faa6dfa42d5f7a34e https://www.encodeproject.org/files/ENCFF000NDF/@@download/ENCFF000NDF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NDH fastq reads ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 36 single-ended 1264349622 Richard Myers, HAIB f774484230933453c063f2b1667dda13 https://www.encodeproject.org/files/ENCFF000NDH/@@download/ENCFF000NDH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001TSV bed broadPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 197264 Richard Myers, HAIB 5e9f089b801b13628a98b8623c9da52b https://www.encodeproject.org/files/ENCFF001TSV/@@download/ENCFF001TSV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001TSW bed broadPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 390866 Richard Myers, HAIB 7a127c0eee155510e08f0121f884804d https://www.encodeproject.org/files/ENCFF001TSW/@@download/ENCFF001TSW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF372XIB bam unfiltered alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000NDH, ENCFF643CGH 1495642493 ENCODE Processing Pipeline 5e064d2eb88f80aef19b3565386ca1f4 https://www.encodeproject.org/files/ENCFF372XIB/@@download/ENCFF372XIB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF455WFJ bam unfiltered alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000NDF, ENCFF643CGH 1020332597 ENCODE Processing Pipeline 95a7d1d720d7545b9e781e630b42da73 https://www.encodeproject.org/files/ENCFF455WFJ/@@download/ENCFF455WFJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF503HYC bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000NDH, ENCFF643CGH 748536102 ENCODE Processing Pipeline 58ab6cfeb44d76cf87e86b8030588256 https://www.encodeproject.org/files/ENCFF503HYC/@@download/ENCFF503HYC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF344VWC bam unfiltered alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000NDF, ENCFF807MUK 1015999760 ENCODE Processing Pipeline 286573d6c9dcb4862a647aae8c2b8415 https://www.encodeproject.org/files/ENCFF344VWC/@@download/ENCFF344VWC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF242TUC bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000NDF, ENCFF807MUK 496667094 ENCODE Processing Pipeline 9096cdfffd8298b020b057a294dcef9b https://www.encodeproject.org/files/ENCFF242TUC/@@download/ENCFF242TUC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF599KFZ bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000NDF, ENCFF643CGH 496412119 ENCODE Processing Pipeline a92e5779e05d22d7fcd65ed7bca0f253 https://www.encodeproject.org/files/ENCFF599KFZ/@@download/ENCFF599KFZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF692HNU bam unfiltered alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000NDH, ENCFF807MUK 1493116135 ENCODE Processing Pipeline aef0bfe0bccd6d6cf7a9a22dc82c28f7 https://www.encodeproject.org/files/ENCFF692HNU/@@download/ENCFF692HNU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF130JET bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000NDH, ENCFF807MUK 748921577 ENCODE Processing Pipeline c3a1f4b559facc9249699b4c484a11f5 https://www.encodeproject.org/files/ENCFF130JET/@@download/ENCFF130JET.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF713ANY bigWig fold change over control ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242TUC, ENCFF540RWT 261126995 ENCODE Processing Pipeline 01ac11cba78b47aebea3f13a7e3e2094 https://www.encodeproject.org/files/ENCFF713ANY/@@download/ENCFF713ANY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF645SYX bed narrowPeak conservative idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF154EAD, ENCFF740MCA, ENCFF804HAX 276594 ENCODE Processing Pipeline 431356507055382e9190445a8fdeb576 https://www.encodeproject.org/files/ENCFF645SYX/@@download/ENCFF645SYX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF527UIE bigWig fold change over control ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF130JET, ENCFF540RWT 328997591 ENCODE Processing Pipeline ff367062c0e98853d0f3b0b9db70645a https://www.encodeproject.org/files/ENCFF527UIE/@@download/ENCFF527UIE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF804HAX bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242TUC, ENCFF540RWT 4277251 ENCODE Processing Pipeline 82d4f0ca4fbc2c9406b10f5587dc113f https://www.encodeproject.org/files/ENCFF804HAX/@@download/ENCFF804HAX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF154EAD bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF130JET, ENCFF540RWT 5164288 ENCODE Processing Pipeline 3ece3de3b2b08e7958c8b5e6a373202f https://www.encodeproject.org/files/ENCFF154EAD/@@download/ENCFF154EAD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF753ZFS bigBed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF154EAD 10827030 ENCODE Processing Pipeline a29eeeb55a1f14c0923860f4bfdcdf3b https://www.encodeproject.org/files/ENCFF753ZFS/@@download/ENCFF753ZFS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF264QQV bigBed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF740MCA 13137186 ENCODE Processing Pipeline e8f959e6d850fcef43c948e35b4492de https://www.encodeproject.org/files/ENCFF264QQV/@@download/ENCFF264QQV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF742DPI bigWig signal p-value ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF130JET, ENCFF242TUC, ENCFF540RWT 505624622 ENCODE Processing Pipeline 91ae87019face97bcdd8a5f5be0dcec2 https://www.encodeproject.org/files/ENCFF742DPI/@@download/ENCFF742DPI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF331OMY bigWig fold change over control ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF130JET, ENCFF242TUC, ENCFF540RWT 524438736 ENCODE Processing Pipeline 2beef470e9986620da32da19520c477f https://www.encodeproject.org/files/ENCFF331OMY/@@download/ENCFF331OMY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF740MCA bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF130JET, ENCFF242TUC, ENCFF540RWT 5564289 ENCODE Processing Pipeline d974bb382c2b8f02115a5c8b15bc6198 https://www.encodeproject.org/files/ENCFF740MCA/@@download/ENCFF740MCA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF506CHU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF645SYX 519827 ENCODE Processing Pipeline 7e09d01115e9cfbc5de9da3b84177a4f https://www.encodeproject.org/files/ENCFF506CHU/@@download/ENCFF506CHU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF415CFG bigWig signal p-value ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242TUC, ENCFF540RWT 446779117 ENCODE Processing Pipeline d3815ec513910766f4665be079e6515d https://www.encodeproject.org/files/ENCFF415CFG/@@download/ENCFF415CFG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF550JQZ bigWig signal p-value ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF130JET, ENCFF540RWT 506920639 ENCODE Processing Pipeline 123858324a619e8bd61b2206e23efe0e https://www.encodeproject.org/files/ENCFF550JQZ/@@download/ENCFF550JQZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF668MVE bigBed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF804HAX 10328129 ENCODE Processing Pipeline 7d7a25df62dc725fad15d137bde21d91 https://www.encodeproject.org/files/ENCFF668MVE/@@download/ENCFF668MVE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF010RXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF499OUD 633804 ENCODE Processing Pipeline b7b8f9f0bdb016ec2b5b91369bd47b54 https://www.encodeproject.org/files/ENCFF010RXQ/@@download/ENCFF010RXQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF499OUD bed narrowPeak optimal idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF154EAD, ENCFF740MCA, ENCFF804HAX 358511 ENCODE Processing Pipeline 7009bdfb16748b7dc7f7f7d5c9b2d1ec https://www.encodeproject.org/files/ENCFF499OUD/@@download/ENCFF499OUD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF004ZJG bigWig signal p-value ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF503HYC, ENCFF570JEY, ENCFF599KFZ 505590811 ENCODE Processing Pipeline 72992672c6d2b5d2775d4bc43c4f06c8 https://www.encodeproject.org/files/ENCFF004ZJG/@@download/ENCFF004ZJG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF118SDO bigWig signal p-value ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF570JEY, ENCFF599KFZ 390621217 ENCODE Processing Pipeline 04a4c4d0266a7bc719281b9f11c49e89 https://www.encodeproject.org/files/ENCFF118SDO/@@download/ENCFF118SDO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF633WUK bigWig signal p-value ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF503HYC, ENCFF570JEY 405872461 ENCODE Processing Pipeline 8733f5040a5a98e8578e61b9d647788d https://www.encodeproject.org/files/ENCFF633WUK/@@download/ENCFF633WUK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF254OPR bigWig fold change over control ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF503HYC, ENCFF570JEY 331290140 ENCODE Processing Pipeline 41b2a99dec34e837a0e547013c1c6a7c https://www.encodeproject.org/files/ENCFF254OPR/@@download/ENCFF254OPR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF593PKX bigBed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF816QLR 13204134 ENCODE Processing Pipeline fa0fca17f6fd4b1ee5906b2cbae60f19 https://www.encodeproject.org/files/ENCFF593PKX/@@download/ENCFF593PKX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF587VEY bed narrowPeak optimal idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF507TCH, ENCFF779OLY, ENCFF816QLR 388850 ENCODE Processing Pipeline 7f339ae5c3f68eb9a3314fbfe0ba42d2 https://www.encodeproject.org/files/ENCFF587VEY/@@download/ENCFF587VEY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF165UOQ bigWig fold change over control ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF503HYC, ENCFF570JEY, ENCFF599KFZ 524629566 ENCODE Processing Pipeline 75a89cc04066550c843ab268a44f1f3d https://www.encodeproject.org/files/ENCFF165UOQ/@@download/ENCFF165UOQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF564GMB bigBed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF779OLY 10332893 ENCODE Processing Pipeline c89503aa7c350554724eb72d53e500cd https://www.encodeproject.org/files/ENCFF564GMB/@@download/ENCFF564GMB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF910CRE bed narrowPeak conservative idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF507TCH, ENCFF779OLY, ENCFF816QLR 301664 ENCODE Processing Pipeline cd42b411f03034a66c4796f2d66d059f https://www.encodeproject.org/files/ENCFF910CRE/@@download/ENCFF910CRE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF695AWD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF587VEY 814606 ENCODE Processing Pipeline 9759915e10c11a67de7a79d8e2a2de86 https://www.encodeproject.org/files/ENCFF695AWD/@@download/ENCFF695AWD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF721BAK bigWig fold change over control ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF570JEY, ENCFF599KFZ 262500607 ENCODE Processing Pipeline bcb342d4532582f3fefa1df084b79e03 https://www.encodeproject.org/files/ENCFF721BAK/@@download/ENCFF721BAK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF507TCH bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF503HYC, ENCFF570JEY 5083107 ENCODE Processing Pipeline 3089c9b90b82f0aed640f4ac6bada9e1 https://www.encodeproject.org/files/ENCFF507TCH/@@download/ENCFF507TCH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF779OLY bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF570JEY, ENCFF599KFZ 4275415 ENCODE Processing Pipeline 13b222c1934c78fa7529f013006127a5 https://www.encodeproject.org/files/ENCFF779OLY/@@download/ENCFF779OLY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF627LHE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF910CRE 555706 ENCODE Processing Pipeline eccc2047b07666a4dada36b1d82610ac https://www.encodeproject.org/files/ENCFF627LHE/@@download/ENCFF627LHE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF816QLR bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF503HYC, ENCFF570JEY, ENCFF599KFZ 5594303 ENCODE Processing Pipeline 3fb169706d3eb44d0fb5cfba44c8dfdb https://www.encodeproject.org/files/ENCFF816QLR/@@download/ENCFF816QLR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF308DQU bigBed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF507TCH 10847069 ENCODE Processing Pipeline 90f4e948b3aff22319eed9be7a65fe83 https://www.encodeproject.org/files/ENCFF308DQU/@@download/ENCFF308DQU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF838CMG fastq reads ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF777VSO 4663758257 Michael Snyder, Stanford a9fd35c5f3d16d17bbff54519561cca4 SRA:SRR6213653 https://www.encodeproject.org/files/ENCFF838CMG/@@download/ENCFF838CMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF350QRO/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF777VSO fastq reads ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF838CMG 4623367504 Michael Snyder, Stanford c44f2e01b851be6f3d6eeb8f11bfe2b8 SRA:SRR6213653 https://www.encodeproject.org/files/ENCFF777VSO/@@download/ENCFF777VSO.fastq.gz Illumina HiSeq 2000 /files/ENCFF008KXY/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF993ZMB bam unfiltered alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF777VSO, ENCFF807MUK, ENCFF838CMG 9209813769 ENCODE Processing Pipeline dd2139dc526a4bb9379792813851994e https://www.encodeproject.org/files/ENCFF993ZMB/@@download/ENCFF993ZMB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF148NPL bam unfiltered alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF643CGH, ENCFF777VSO, ENCFF838CMG 9229630096 ENCODE Processing Pipeline 32ab99581903c46e2f05c26638ff0db2 https://www.encodeproject.org/files/ENCFF148NPL/@@download/ENCFF148NPL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF711LPL bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF643CGH, ENCFF777VSO, ENCFF838CMG 7573178744 ENCODE Processing Pipeline 4f9bb5ffbbb87627ebe9231c43e694cb https://www.encodeproject.org/files/ENCFF711LPL/@@download/ENCFF711LPL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF271APY bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF777VSO, ENCFF807MUK, ENCFF838CMG 7560679721 ENCODE Processing Pipeline 29c408b9d4344902e2c89ff49abc1e0d https://www.encodeproject.org/files/ENCFF271APY/@@download/ENCFF271APY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF281STR bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF711LPL, ENCFF727ZMM, ENCFF866GOS 7020391 ENCODE Processing Pipeline 5faac226a0484a4b970a6e50ad948d2f https://www.encodeproject.org/files/ENCFF281STR/@@download/ENCFF281STR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF677OAS fastq reads ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF717IEJ 4649391695 Michael Snyder, Stanford 364b35ff944e746331cadddc0cbd8ea7 SRA:SRR6213654 https://www.encodeproject.org/files/ENCFF677OAS/@@download/ENCFF677OAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF580YIK/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF717IEJ fastq reads ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF677OAS 4671742354 Michael Snyder, Stanford 2925ca4211d6383898bf10c36ad7583b SRA:SRR6213654 https://www.encodeproject.org/files/ENCFF717IEJ/@@download/ENCFF717IEJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF975ZQI/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF616TAT fastq reads ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF425NMS 4052354388 Michael Snyder, Stanford 5efd4274a11be4a168c8532a441319ca SRA:SRR6213655 https://www.encodeproject.org/files/ENCFF616TAT/@@download/ENCFF616TAT.fastq.gz Illumina HiSeq 2000 /files/ENCFF580YIK/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF425NMS fastq reads ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF616TAT 4114788712 Michael Snyder, Stanford 4b6c95cb40d8969d137ffee43e76ce28 SRA:SRR6213655 https://www.encodeproject.org/files/ENCFF425NMS/@@download/ENCFF425NMS.fastq.gz Illumina HiSeq 2000 /files/ENCFF975ZQI/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF713UQY bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF425NMS, ENCFF616TAT, ENCFF677OAS, ENCFF717IEJ, ENCFF807MUK 11527063340 ENCODE Processing Pipeline dea8fd4dd5b2ccdcc9b3a70ed3b75e2f https://www.encodeproject.org/files/ENCFF713UQY/@@download/ENCFF713UQY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF973XKY bam unfiltered alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF425NMS, ENCFF616TAT, ENCFF677OAS, ENCFF717IEJ, ENCFF807MUK 16364386105 ENCODE Processing Pipeline 4ca354f7f124e39b90f17b154be8647b https://www.encodeproject.org/files/ENCFF973XKY/@@download/ENCFF973XKY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF515EQP bam unfiltered alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF425NMS, ENCFF616TAT, ENCFF643CGH, ENCFF677OAS, ENCFF717IEJ 16393690004 ENCODE Processing Pipeline 6d466da35ab18a8d0a87f4c8b0f4555a https://www.encodeproject.org/files/ENCFF515EQP/@@download/ENCFF515EQP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF183SXR bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF425NMS, ENCFF616TAT, ENCFF643CGH, ENCFF677OAS, ENCFF717IEJ 11559569552 ENCODE Processing Pipeline e443733005bd1d3a27376335a0bb3e41 https://www.encodeproject.org/files/ENCFF183SXR/@@download/ENCFF183SXR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF181GHR bigWig fold change over control ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 2635386933 ENCODE Processing Pipeline 43ffc14b7e801a6dcbcfff1fb8b016b6 https://www.encodeproject.org/files/ENCFF181GHR/@@download/ENCFF181GHR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF942DLA bigBed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF696QFR 13568031 ENCODE Processing Pipeline 7b7ed690939abdd0a93a2571fe39f864 https://www.encodeproject.org/files/ENCFF942DLA/@@download/ENCFF942DLA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF397DGY bigBed narrowPeak conservative idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF482VUA 1262891 ENCODE Processing Pipeline 8ea8c4cbdb801844b15a35499665e9fa https://www.encodeproject.org/files/ENCFF397DGY/@@download/ENCFF397DGY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF901BGG bed narrowPeak optimal idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF265NZD, ENCFF499RVM, ENCFF696QFR 771337 ENCODE Processing Pipeline 7c52b039f0a5e21db97ef3f12a4d997b https://www.encodeproject.org/files/ENCFF901BGG/@@download/ENCFF901BGG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF695JYE bigWig signal p-value ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 2156747100 ENCODE Processing Pipeline 59d057780d6c6867f1d42ed88019bf6f https://www.encodeproject.org/files/ENCFF695JYE/@@download/ENCFF695JYE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF540QUN bigWig signal p-value ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF271APY, ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 2730395639 ENCODE Processing Pipeline b5066d47ba7c78bb9f916d78a10b41f0 https://www.encodeproject.org/files/ENCFF540QUN/@@download/ENCFF540QUN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF915SSU bigWig fold change over control ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF271APY, ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 4396497712 ENCODE Processing Pipeline 09908636a34a663c3be7e5e0bd6dee2a https://www.encodeproject.org/files/ENCFF915SSU/@@download/ENCFF915SSU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF216DHB bigBed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF265NZD 13241800 ENCODE Processing Pipeline 341d20fab7e22fa35273cd495c4feb5d https://www.encodeproject.org/files/ENCFF216DHB/@@download/ENCFF216DHB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF137FQL bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF183SXR, ENCFF727ZMM, ENCFF866GOS 7148709 ENCODE Processing Pipeline 6c71133446f29abff1c871e83c014ad8 https://www.encodeproject.org/files/ENCFF137FQL/@@download/ENCFF137FQL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF499RVM bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF271APY, ENCFF540UGI, ENCFF854RGJ 7197917 ENCODE Processing Pipeline 66fad398ac62fbfd8c5fab793951b147 https://www.encodeproject.org/files/ENCFF499RVM/@@download/ENCFF499RVM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF696QFR bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF271APY, ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 7186218 ENCODE Processing Pipeline 7a081bd8581e98feb2ef0ef62ad56bca https://www.encodeproject.org/files/ENCFF696QFR/@@download/ENCFF696QFR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF482VUA bed narrowPeak conservative idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF265NZD, ENCFF499RVM, ENCFF696QFR 587195 ENCODE Processing Pipeline b66836880226b9aa020b46732862ca57 https://www.encodeproject.org/files/ENCFF482VUA/@@download/ENCFF482VUA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF805BDU bigWig signal p-value ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF183SXR, ENCFF711LPL, ENCFF727ZMM, ENCFF866GOS 2721772204 ENCODE Processing Pipeline b8dd53b938f92e0244e71cb8aaa84722 https://www.encodeproject.org/files/ENCFF805BDU/@@download/ENCFF805BDU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF863HHT bigBed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF137FQL 13181515 ENCODE Processing Pipeline 6368e7b5aab27cb84d0a4e85a24e639b https://www.encodeproject.org/files/ENCFF863HHT/@@download/ENCFF863HHT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF265NZD bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 7207096 ENCODE Processing Pipeline b6d0dca4b146c770fc2c5697cd8aa194 https://www.encodeproject.org/files/ENCFF265NZD/@@download/ENCFF265NZD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF910VMF bigBed narrowPeak optimal idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF901BGG 1598839 ENCODE Processing Pipeline d9199d4261bdd7c9fe75f5123362666f https://www.encodeproject.org/files/ENCFF910VMF/@@download/ENCFF910VMF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF238OEZ bigBed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF996YCP 13556907 ENCODE Processing Pipeline b0e2396d5b788f6ba616147a9410e29b https://www.encodeproject.org/files/ENCFF238OEZ/@@download/ENCFF238OEZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF376FKS bigWig fold change over control ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF183SXR, ENCFF711LPL, ENCFF727ZMM, ENCFF866GOS 4375924060 ENCODE Processing Pipeline 35214e336836afa591646177be2b78c7 https://www.encodeproject.org/files/ENCFF376FKS/@@download/ENCFF376FKS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF768MDC bigWig fold change over control ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF183SXR, ENCFF727ZMM, ENCFF866GOS 2640677091 ENCODE Processing Pipeline 66c3ebeaccc7306d228e3b8b21654822 https://www.encodeproject.org/files/ENCFF768MDC/@@download/ENCFF768MDC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF996YCP bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF183SXR, ENCFF711LPL, ENCFF727ZMM, ENCFF866GOS 7169442 ENCODE Processing Pipeline 32b0f42aa078706f9001c3b96ff58f5c https://www.encodeproject.org/files/ENCFF996YCP/@@download/ENCFF996YCP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF004LSM bed narrowPeak conservative idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF137FQL, ENCFF281STR, ENCFF419RSJ, ENCFF996YCP 584259 ENCODE Processing Pipeline bc7c903429140cebf47535521ff95765 https://www.encodeproject.org/files/ENCFF004LSM/@@download/ENCFF004LSM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF501SHB bed narrowPeak optimal idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF137FQL, ENCFF281STR, ENCFF419RSJ, ENCFF996YCP 771828 ENCODE Processing Pipeline b3d9060f8d80222fdb9533dee5d136eb https://www.encodeproject.org/files/ENCFF501SHB/@@download/ENCFF501SHB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF696JJG bigWig signal p-value ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF183SXR, ENCFF727ZMM, ENCFF866GOS 2231670030 ENCODE Processing Pipeline 01a0b085a08ec9f9b99f43ac4caf378d https://www.encodeproject.org/files/ENCFF696JJG/@@download/ENCFF696JJG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF584KPC bigBed narrowPeak conservative idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF004LSM 1261077 ENCODE Processing Pipeline e600a3128d942e4389d5c6696c253909 https://www.encodeproject.org/files/ENCFF584KPC/@@download/ENCFF584KPC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF286ZVA bigBed narrowPeak optimal idr thresholded peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF501SHB 1600163 ENCODE Processing Pipeline a9bf0d1df7ca38795516d47676556f0d https://www.encodeproject.org/files/ENCFF286ZVA/@@download/ENCFF286ZVA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF329MZG bam unfiltered alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 50 ENCFF029VDC, ENCFF689PMN, ENCFF807MUK 1456086033 ENCODE Processing Pipeline 17bb85a51664eb7422a7bfafe04c8326 https://www.encodeproject.org/files/ENCFF329MZG/@@download/ENCFF329MZG.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF557RIA bam unfiltered alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 50 ENCFF552KRG, ENCFF639TAD, ENCFF807MUK 1785060949 ENCODE Processing Pipeline 9208f549347e259906401d9c45192d59 https://www.encodeproject.org/files/ENCFF557RIA/@@download/ENCFF557RIA.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF809JGK fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 2 1 50 single-ended 930049569 Kevin White, UChicago a9dcf89e5334d57a57eb50bce67a2ba6 https://www.encodeproject.org/files/ENCFF809JGK/@@download/ENCFF809JGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF330MJC/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF552KRG fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 1 50 single-ended 743517134 Kevin White, UChicago e4a2cf6aa7a9951862ddf75272bd81c6 https://www.encodeproject.org/files/ENCFF552KRG/@@download/ENCFF552KRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF330MJC/ released missing genetic modification characterization experiment not submitted to GEO ENCFF029VDC fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 1 50 single-ended 585967937 Kevin White, UChicago 98687ac5698c3539a1cdae038dc8beaf https://www.encodeproject.org/files/ENCFF029VDC/@@download/ENCFF029VDC.fastq.gz Illumina HiSeq 2500 /files/ENCFF330MJC/ released missing genetic modification characterization experiment not submitted to GEO ENCFF522YVV fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 1 1 50 single-ended 816878862 Kevin White, UChicago 8e05a650cfa0a03024cbb4732c212c66 https://www.encodeproject.org/files/ENCFF522YVV/@@download/ENCFF522YVV.fastq.gz Illumina HiSeq 2000 /files/ENCFF330MJC/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF285EHK fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 2 1 50 single-ended 696999658 Kevin White, UChicago 8cf26e497caf305a6d268492a95cf110 https://www.encodeproject.org/files/ENCFF285EHK/@@download/ENCFF285EHK.fastq.gz Illumina HiSeq 2500 /files/ENCFF330MJC/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF639TAD fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 1 50 single-ended 951948256 Kevin White, UChicago 24ea04dcff721821554424385707cc13 https://www.encodeproject.org/files/ENCFF639TAD/@@download/ENCFF639TAD.fastq.gz Illumina HiSeq 2500 /files/ENCFF330MJC/ released missing genetic modification characterization experiment not submitted to GEO ENCFF689PMN fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 1 50 single-ended 799922056 Kevin White, UChicago ef63af2dc5370ebcabd418b39d0ce5e6 https://www.encodeproject.org/files/ENCFF689PMN/@@download/ENCFF689PMN.fastq.gz Illumina HiSeq 2500 /files/ENCFF330MJC/ released missing genetic modification characterization experiment not submitted to GEO ENCFF311FWI fastq reads ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 1 1 50 single-ended 723646495 Kevin White, UChicago a0a819af8e4d9018f770bb6a2921ecb4 https://www.encodeproject.org/files/ENCFF311FWI/@@download/ENCFF311FWI.fastq.gz Illumina HiSeq 2500 /files/ENCFF330MJC/ archived missing genetic modification characterization experiment not submitted to GEO ENCFF652MLY bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF029VDC, ENCFF689PMN, ENCFF807MUK 1005922581 ENCODE Processing Pipeline d54f5f140db5c72d44d7c8bcece00b55 https://www.encodeproject.org/files/ENCFF652MLY/@@download/ENCFF652MLY.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF628WUH bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF552KRG, ENCFF639TAD, ENCFF807MUK 1331345266 ENCODE Processing Pipeline 2ce2a39c438aa3c4f12379023bddfa8d https://www.encodeproject.org/files/ENCFF628WUH/@@download/ENCFF628WUH.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF540RRN bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 1 ENCFF311FWI, ENCFF522YVV, ENCFF807MUK 1282605397 ENCODE Processing Pipeline 38e49e5265305b00b03c3f0bfcd7f70f https://www.encodeproject.org/files/ENCFF540RRN/@@download/ENCFF540RRN.bam hg19 archived missing genetic modification characterization experiment not submitted to GEO ENCFF332SCO bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 2 ENCFF285EHK, ENCFF807MUK, ENCFF809JGK 1226888019 ENCODE Processing Pipeline 260251e5a5f314d2c6df15a419868b9a https://www.encodeproject.org/files/ENCFF332SCO/@@download/ENCFF332SCO.bam hg19 archived missing genetic modification characterization experiment not submitted to GEO ENCFF175LHQ bam unfiltered alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 50 ENCFF029VDC, ENCFF643CGH, ENCFF689PMN 1460546566 ENCODE Processing Pipeline 089889ce118145561a5e8d0f1e4a0d2b https://www.encodeproject.org/files/ENCFF175LHQ/@@download/ENCFF175LHQ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF210JIP bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 50 ENCFF029VDC, ENCFF643CGH, ENCFF689PMN 1005428864 ENCODE Processing Pipeline b163c29b49113016b20d22cf4ec113c9 https://www.encodeproject.org/files/ENCFF210JIP/@@download/ENCFF210JIP.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF634BDN bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 50 ENCFF552KRG, ENCFF639TAD, ENCFF643CGH 1330737938 ENCODE Processing Pipeline 2bfb26aa5ee5a341f414f42dd8e364c1 https://www.encodeproject.org/files/ENCFF634BDN/@@download/ENCFF634BDN.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF482YXV bam unfiltered alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 50 ENCFF552KRG, ENCFF639TAD, ENCFF643CGH 1791168348 ENCODE Processing Pipeline 8d854a0578da0be0c6483c2288f468fe https://www.encodeproject.org/files/ENCFF482YXV/@@download/ENCFF482YXV.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF116DIO bed narrowPeak optimal idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF001TDO, ENCFF297GYL, ENCFF890QZH, ENCFF985CUX 412739 ENCODE Processing Pipeline 1373edacc8e8c659850e64d69646692f https://www.encodeproject.org/files/ENCFF116DIO/@@download/ENCFF116DIO.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF463OBI bigWig signal p-value ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF628WUH, ENCFF873OEB 767809970 ENCODE Processing Pipeline ff037e0d16421f4838a0fa57f66ea8cd https://www.encodeproject.org/files/ENCFF463OBI/@@download/ENCFF463OBI.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF963UGH bigWig fold change over control ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF628WUH, ENCFF652MLY, ENCFF873OEB 1187243077 ENCODE Processing Pipeline f49108c379ed29972e80ad8bbd14c09b https://www.encodeproject.org/files/ENCFF963UGH/@@download/ENCFF963UGH.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF297GYL bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF628WUH, ENCFF873OEB 6823364 ENCODE Processing Pipeline d1c196a97b70e4895daaaf058bfaea05 https://www.encodeproject.org/files/ENCFF297GYL/@@download/ENCFF297GYL.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF985CUX bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF652MLY, ENCFF873OEB 6455462 ENCODE Processing Pipeline e11bc058383e8fdea61915a0066f4a1b https://www.encodeproject.org/files/ENCFF985CUX/@@download/ENCFF985CUX.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF668QOT bigBed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF985CUX 13162738 ENCODE Processing Pipeline 2746312caf029b646a531a71fa1b6ae0 https://www.encodeproject.org/files/ENCFF668QOT/@@download/ENCFF668QOT.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF475ERB bigBed narrowPeak conservative idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF913RLZ 979981 ENCODE Processing Pipeline e112b361882ae86fc10195601af3c8da https://www.encodeproject.org/files/ENCFF475ERB/@@download/ENCFF475ERB.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF328OAA bigWig signal p-value ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF652MLY, ENCFF873OEB 851754513 ENCODE Processing Pipeline 51e0c0e608adee80790657499cb6ce51 https://www.encodeproject.org/files/ENCFF328OAA/@@download/ENCFF328OAA.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF541KBJ bigBed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF297GYL 13130519 ENCODE Processing Pipeline c9a35ce81bdf4a58d3ac205b330a08a6 https://www.encodeproject.org/files/ENCFF541KBJ/@@download/ENCFF541KBJ.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF166EDY bigBed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF890QZH 13141192 ENCODE Processing Pipeline 1d40ee287ae9563e3112afa988466e3c https://www.encodeproject.org/files/ENCFF166EDY/@@download/ENCFF166EDY.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF699UKF bigBed narrowPeak optimal idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF116DIO 985200 ENCODE Processing Pipeline 7159e4a181eb1b7d4bac085dbf04522d https://www.encodeproject.org/files/ENCFF699UKF/@@download/ENCFF699UKF.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF856RQV bigWig fold change over control ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF652MLY, ENCFF873OEB 770321092 ENCODE Processing Pipeline a800f8e771a4105d03e7f3f028b9817c https://www.encodeproject.org/files/ENCFF856RQV/@@download/ENCFF856RQV.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF660CEH bigWig fold change over control ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF628WUH, ENCFF873OEB 893594528 ENCODE Processing Pipeline 9beeae270bf4280917f0b309a38ce2b9 https://www.encodeproject.org/files/ENCFF660CEH/@@download/ENCFF660CEH.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF355UPP bigWig signal p-value ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF628WUH, ENCFF652MLY, ENCFF873OEB 1159141794 ENCODE Processing Pipeline f4e568049c754ab73c014d494a4c6758 https://www.encodeproject.org/files/ENCFF355UPP/@@download/ENCFF355UPP.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF890QZH bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF628WUH, ENCFF652MLY, ENCFF873OEB 7091141 ENCODE Processing Pipeline f53f3d530da3e83bcd20c25e7c3fd430 https://www.encodeproject.org/files/ENCFF890QZH/@@download/ENCFF890QZH.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF913RLZ bed narrowPeak conservative idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF001TDO, ENCFF297GYL, ENCFF890QZH, ENCFF985CUX 410170 ENCODE Processing Pipeline e67f22147dbf35406dedf8d9c6b422b7 https://www.encodeproject.org/files/ENCFF913RLZ/@@download/ENCFF913RLZ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF822YKY bigWig fold change over control ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF210JIP, ENCFF711KPW 767271819 ENCODE Processing Pipeline 4e9cc924c17ee27ea7a104c7e53f114a https://www.encodeproject.org/files/ENCFF822YKY/@@download/ENCFF822YKY.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF525WWQ bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF210JIP, ENCFF711KPW 6464722 ENCODE Processing Pipeline 924024ba01d03d99c4c5cc3a389a47cf https://www.encodeproject.org/files/ENCFF525WWQ/@@download/ENCFF525WWQ.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF748KZH bigBed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF605IWT 13136958 ENCODE Processing Pipeline 1512b94c68acb4d7f41fcfb6a6ed818c https://www.encodeproject.org/files/ENCFF748KZH/@@download/ENCFF748KZH.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF752WJS bigBed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF525WWQ 13181050 ENCODE Processing Pipeline 203c253c35629452612633511340ead3 https://www.encodeproject.org/files/ENCFF752WJS/@@download/ENCFF752WJS.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF775HNC bigWig signal p-value ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF210JIP, ENCFF711KPW 845447216 ENCODE Processing Pipeline 0502c6801bddb13c81fcf749cfff38b9 https://www.encodeproject.org/files/ENCFF775HNC/@@download/ENCFF775HNC.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF683MAA bigWig signal p-value ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF210JIP, ENCFF634BDN, ENCFF711KPW 1224184738 ENCODE Processing Pipeline 81040fa523eedbfef2b614916ab73e48 https://www.encodeproject.org/files/ENCFF683MAA/@@download/ENCFF683MAA.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF598YCA bigBed narrowPeak conservative idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF164ODT 985112 ENCODE Processing Pipeline 8dc8d5061619351016db1792868f47bb https://www.encodeproject.org/files/ENCFF598YCA/@@download/ENCFF598YCA.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF836QWY bed narrowPeak optimal idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF419RSJ, ENCFF525WWQ, ENCFF605IWT, ENCFF847JMS 422912 ENCODE Processing Pipeline 3832f801d93f6210d80cb025714d1e4b https://www.encodeproject.org/files/ENCFF836QWY/@@download/ENCFF836QWY.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF847JMS bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF210JIP, ENCFF634BDN, ENCFF711KPW 7092579 ENCODE Processing Pipeline d4f51b5491e371cd083e32fda887657f https://www.encodeproject.org/files/ENCFF847JMS/@@download/ENCFF847JMS.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF991VTG bigBed narrowPeak optimal idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF836QWY 1004793 ENCODE Processing Pipeline f649ac6782f3cb86a09a4ac85f689b92 https://www.encodeproject.org/files/ENCFF991VTG/@@download/ENCFF991VTG.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF018CBV bigWig signal p-value ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF634BDN, ENCFF711KPW 986281200 ENCODE Processing Pipeline 0ae71ed6d243b37ee5bbb6cfcdc0371b https://www.encodeproject.org/files/ENCFF018CBV/@@download/ENCFF018CBV.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF678RNB bigWig fold change over control ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF634BDN, ENCFF711KPW 895068278 ENCODE Processing Pipeline 3a38d3fa7e64f99a74fbf6443484d993 https://www.encodeproject.org/files/ENCFF678RNB/@@download/ENCFF678RNB.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF970ISQ bigWig fold change over control ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF210JIP, ENCFF634BDN, ENCFF711KPW 1191427271 ENCODE Processing Pipeline fe5d66b5f0c19afc36cf389c0fd33c60 https://www.encodeproject.org/files/ENCFF970ISQ/@@download/ENCFF970ISQ.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF605IWT bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF634BDN, ENCFF711KPW 6825513 ENCODE Processing Pipeline 9d8dac40103676a270e566568f456c58 https://www.encodeproject.org/files/ENCFF605IWT/@@download/ENCFF605IWT.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF289ZBV bigBed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF847JMS 13147892 ENCODE Processing Pipeline daed74e47842305fc0c3dd296021687c https://www.encodeproject.org/files/ENCFF289ZBV/@@download/ENCFF289ZBV.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF164ODT bed narrowPeak conservative idr thresholded peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF419RSJ, ENCFF525WWQ, ENCFF605IWT, ENCFF847JMS 412487 ENCODE Processing Pipeline c7a2c82cfa9f80c7c4619ae61408b198 https://www.encodeproject.org/files/ENCFF164ODT/@@download/ENCFF164ODT.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF309WXK bam unfiltered alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 50 ENCFF588TEN, ENCFF807MUK, ENCFF923QSF 1488593226 ENCODE Processing Pipeline 651a1a71d5819128dff804ae5dd02a2a https://www.encodeproject.org/files/ENCFF309WXK/@@download/ENCFF309WXK.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF315FRH bam unfiltered alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 50 ENCFF168UBS, ENCFF807MUK, ENCFF971NWQ 1015526517 ENCODE Processing Pipeline 77d5ee862ab2d17ec768bd42cc4d382f https://www.encodeproject.org/files/ENCFF315FRH/@@download/ENCFF315FRH.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF923QSF fastq reads ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 498322393 Kevin White, UChicago 742fd3974e5cca40e30aaf9a6eba5720 SRA:SRR6213062 https://www.encodeproject.org/files/ENCFF923QSF/@@download/ENCFF923QSF.fastq.gz Illumina HiSeq 2000 /files/ENCFF373VKP/ released control low read depth, low read depth, missing genetic modification characterization ENCFF971NWQ fastq reads ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 476156667 Kevin White, UChicago 4ff5a7d5af37ffdd70a247332dea7bf3 SRA:SRR6213064 https://www.encodeproject.org/files/ENCFF971NWQ/@@download/ENCFF971NWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF373VKP/ released control low read depth, low read depth, missing genetic modification characterization ENCFF168UBS fastq reads ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 495181237 Kevin White, UChicago 337781fcc728290d7e3269b39a2efc36 SRA:SRR6213065 https://www.encodeproject.org/files/ENCFF168UBS/@@download/ENCFF168UBS.fastq.gz Illumina HiSeq 2500 /files/ENCFF373VKP/ released control low read depth, low read depth, missing genetic modification characterization ENCFF588TEN fastq reads ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 902516416 Kevin White, UChicago 60fa6d987365ad7d46c7ae1bf15c8c4e SRA:SRR6213063 https://www.encodeproject.org/files/ENCFF588TEN/@@download/ENCFF588TEN.fastq.gz Illumina HiSeq 2500 /files/ENCFF373VKP/ released control low read depth, low read depth, missing genetic modification characterization ENCFF729JBY bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 50 ENCFF588TEN, ENCFF807MUK, ENCFF923QSF 1122534872 ENCODE Processing Pipeline f1872cf15242969a45f68090c383b71e https://www.encodeproject.org/files/ENCFF729JBY/@@download/ENCFF729JBY.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF500XCK bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 50 ENCFF168UBS, ENCFF807MUK, ENCFF971NWQ 731309708 ENCODE Processing Pipeline 91a45b86ef9a0dee91d3d9af7c67cea4 https://www.encodeproject.org/files/ENCFF500XCK/@@download/ENCFF500XCK.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF117NWF bigWig signal p-value ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF500XCK, ENCFF743HYF 376168943 ENCODE Processing Pipeline a0fefcedac8006e34f4060648c80e5e8 https://www.encodeproject.org/files/ENCFF117NWF/@@download/ENCFF117NWF.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF198VXO bigWig signal p-value ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF500XCK, ENCFF729JBY, ENCFF743HYF 446148878 ENCODE Processing Pipeline 32447e9227f4aa70f808bdeb86ea70b6 https://www.encodeproject.org/files/ENCFF198VXO/@@download/ENCFF198VXO.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF829ATU bigWig signal p-value ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF729JBY, ENCFF743HYF 451791578 ENCODE Processing Pipeline a6b91e8badb6f36b92663fc4b25cd2ec https://www.encodeproject.org/files/ENCFF829ATU/@@download/ENCFF829ATU.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF487DPZ bigWig fold change over control ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF729JBY, ENCFF743HYF 487065523 ENCODE Processing Pipeline 5f09516d547f6e45b63e38e346bf2e53 https://www.encodeproject.org/files/ENCFF487DPZ/@@download/ENCFF487DPZ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF748LKT bigWig fold change over control ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF500XCK, ENCFF743HYF 375646046 ENCODE Processing Pipeline 829d48d2a2747f852d11cabfa4032049 https://www.encodeproject.org/files/ENCFF748LKT/@@download/ENCFF748LKT.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF784XPD bigWig fold change over control ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF500XCK, ENCFF729JBY, ENCFF743HYF 698549701 ENCODE Processing Pipeline 5a8743ab6320f7a529404b3465c8c664 https://www.encodeproject.org/files/ENCFF784XPD/@@download/ENCFF784XPD.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF470XSK bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF729JBY, ENCFF743HYF 6656025 ENCODE Processing Pipeline 60172433ce6edcbd05d4ded1bb9c513d https://www.encodeproject.org/files/ENCFF470XSK/@@download/ENCFF470XSK.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF783GCE bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF500XCK, ENCFF743HYF 6447846 ENCODE Processing Pipeline 7cb8cf2a71265a1596660d48d5838dec https://www.encodeproject.org/files/ENCFF783GCE/@@download/ENCFF783GCE.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF501ZPL bigBed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF783GCE 12686571 ENCODE Processing Pipeline f31847fd99436aea6a19dec92ba1dc80 https://www.encodeproject.org/files/ENCFF501ZPL/@@download/ENCFF501ZPL.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF524YHM bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF500XCK, ENCFF729JBY, ENCFF743HYF 7097897 ENCODE Processing Pipeline a21018d8f50da75f19a06ee928071dfc https://www.encodeproject.org/files/ENCFF524YHM/@@download/ENCFF524YHM.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF716LRJ bigBed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF470XSK 12823457 ENCODE Processing Pipeline 08b13c74fb05d91b578bc8b341d8f716 https://www.encodeproject.org/files/ENCFF716LRJ/@@download/ENCFF716LRJ.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF591BBK bigBed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF524YHM 12701942 ENCODE Processing Pipeline 4d9615b983810b535420b82000cae1a6 https://www.encodeproject.org/files/ENCFF591BBK/@@download/ENCFF591BBK.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF514JYU bam unfiltered alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 50 ENCFF168UBS, ENCFF643CGH, ENCFF971NWQ 1017873525 ENCODE Processing Pipeline f1e99afa87f29753bcf54871539a9020 https://www.encodeproject.org/files/ENCFF514JYU/@@download/ENCFF514JYU.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF056SZG bam unfiltered alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 50 ENCFF588TEN, ENCFF643CGH, ENCFF923QSF 1492955607 ENCODE Processing Pipeline dce0a83333262097780738686da1219a https://www.encodeproject.org/files/ENCFF056SZG/@@download/ENCFF056SZG.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF284MLL bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 50 ENCFF168UBS, ENCFF643CGH, ENCFF971NWQ 730792075 ENCODE Processing Pipeline 6acf6268341b5891ed1f4715454a5b46 https://www.encodeproject.org/files/ENCFF284MLL/@@download/ENCFF284MLL.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF465ZZG bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 50 ENCFF588TEN, ENCFF643CGH, ENCFF923QSF 1121821316 ENCODE Processing Pipeline 2bc2ae30b53a1a225d6d53172a93d82b https://www.encodeproject.org/files/ENCFF465ZZG/@@download/ENCFF465ZZG.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF752OAL bigWig fold change over control ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF284MLL, ENCFF604MCA 370859307 ENCODE Processing Pipeline e11cd56eb9fa46cf72c39d6f6f959c61 https://www.encodeproject.org/files/ENCFF752OAL/@@download/ENCFF752OAL.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF462NSW bigWig signal p-value ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF465ZZG, ENCFF604MCA 451302144 ENCODE Processing Pipeline a21ce6e93109522bbcaf8bc189f1379c https://www.encodeproject.org/files/ENCFF462NSW/@@download/ENCFF462NSW.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF166PZJ bigWig signal p-value ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF284MLL, ENCFF465ZZG, ENCFF604MCA 439473127 ENCODE Processing Pipeline a481d9b05ab28667b92286d3e0014d43 https://www.encodeproject.org/files/ENCFF166PZJ/@@download/ENCFF166PZJ.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF024ELS bigWig fold change over control ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF465ZZG, ENCFF604MCA 485220445 ENCODE Processing Pipeline 71c4f7042f89a035e703f9e1d1ccc251 https://www.encodeproject.org/files/ENCFF024ELS/@@download/ENCFF024ELS.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF473CJP bigWig fold change over control ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF284MLL, ENCFF465ZZG, ENCFF604MCA 687372103 ENCODE Processing Pipeline 8091eb015077f0c1ea00f5c54f2d15b0 https://www.encodeproject.org/files/ENCFF473CJP/@@download/ENCFF473CJP.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF086WCV bigWig signal p-value ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF284MLL, ENCFF604MCA 399412250 ENCODE Processing Pipeline ada68967e1b83132c65b6157d064a90a https://www.encodeproject.org/files/ENCFF086WCV/@@download/ENCFF086WCV.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF171ODU bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF465ZZG, ENCFF604MCA 6518232 ENCODE Processing Pipeline 2dfb7b420ed4b9f47b9ce1c04ba11381 https://www.encodeproject.org/files/ENCFF171ODU/@@download/ENCFF171ODU.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF143EAJ bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF284MLL, ENCFF465ZZG, ENCFF604MCA 6967893 ENCODE Processing Pipeline 92ed1c21f494efc6d9f67a799a0c42c4 https://www.encodeproject.org/files/ENCFF143EAJ/@@download/ENCFF143EAJ.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF869OFC bigBed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF143EAJ 12717459 ENCODE Processing Pipeline 5d204d37e1d3fffa6f6d7714aa228b08 https://www.encodeproject.org/files/ENCFF869OFC/@@download/ENCFF869OFC.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF734GUF bigBed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF171ODU 12820232 ENCODE Processing Pipeline 12f51735370aadcb61f4fd8a591dabde https://www.encodeproject.org/files/ENCFF734GUF/@@download/ENCFF734GUF.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF909KSV bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF284MLL, ENCFF604MCA 6290134 ENCODE Processing Pipeline 9b52420f678325d956c2e4b63e78fb88 https://www.encodeproject.org/files/ENCFF909KSV/@@download/ENCFF909KSV.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF044TCD bed narrowPeak conservative idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF143EAJ, ENCFF171ODU, ENCFF419RSJ, ENCFF909KSV 387129 ENCODE Processing Pipeline 12446ecdc909e56ad6099521bcbd0bdc https://www.encodeproject.org/files/ENCFF044TCD/@@download/ENCFF044TCD.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF575PQQ bigBed narrowPeak conservative idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF044TCD 978915 ENCODE Processing Pipeline ee67811b40a095838a3b81da77336057 https://www.encodeproject.org/files/ENCFF575PQQ/@@download/ENCFF575PQQ.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF616YTV bigBed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF909KSV 12697861 ENCODE Processing Pipeline de99bb2e3de7938dd026e6d8f8b48de0 https://www.encodeproject.org/files/ENCFF616YTV/@@download/ENCFF616YTV.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF271NEP bed narrowPeak optimal idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF143EAJ, ENCFF171ODU, ENCFF419RSJ, ENCFF909KSV 389902 ENCODE Processing Pipeline 4ee33dbe140816bcee4908c36c73d3f5 https://www.encodeproject.org/files/ENCFF271NEP/@@download/ENCFF271NEP.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF818UQY bigBed narrowPeak optimal idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF271NEP 984982 ENCODE Processing Pipeline e8e853e9c938b241094bec21258e0fa3 https://www.encodeproject.org/files/ENCFF818UQY/@@download/ENCFF818UQY.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF576LGB bigBed narrowPeak optimal idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF602AXP 615446 ENCODE Processing Pipeline 47426c5ffd7a49678fba432567a54c43 https://www.encodeproject.org/files/ENCFF576LGB/@@download/ENCFF576LGB.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF038QAE bigBed narrowPeak conservative idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF433UZU 599047 ENCODE Processing Pipeline 636ba1616b10567788f12728ac9c822d https://www.encodeproject.org/files/ENCFF038QAE/@@download/ENCFF038QAE.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF602AXP bed narrowPeak optimal idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF470XSK, ENCFF524YHM, ENCFF783GCE 328275 ENCODE Processing Pipeline ad7eca2f92009aa774a2f0e1cc3ca6df https://www.encodeproject.org/files/ENCFF602AXP/@@download/ENCFF602AXP.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF433UZU bed narrowPeak conservative idr thresholded peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF470XSK, ENCFF524YHM, ENCFF783GCE 316519 ENCODE Processing Pipeline cffa04741a1c81b1f1a153eff47d066b https://www.encodeproject.org/files/ENCFF433UZU/@@download/ENCFF433UZU.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF000XCX bigBed narrowPeak peaks ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIE 205512 Peggy Farnham, USC 9e9eff9540e152d24042bf3b498ab7d8 https://www.encodeproject.org/files/ENCFF000XCX/@@download/ENCFF000XCX.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XCY bigWig signal ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 455504255 Peggy Farnham, USC 687a52fa7464e482e36b929a422d0b75 https://www.encodeproject.org/files/ENCFF000XCY/@@download/ENCFF000XCY.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XCZ bam alignments ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XDF 962178552 Peggy Farnham, USC 49370012c559bd874874432c0bf860ea https://www.encodeproject.org/files/ENCFF000XCZ/@@download/ENCFF000XCZ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDA bam alignments ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XDG 1076353094 Peggy Farnham, USC 02d31daf49445e206e95ca185d6efef2 https://www.encodeproject.org/files/ENCFF000XDA/@@download/ENCFF000XDA.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDF fastq reads ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 722513534 Peggy Farnham, USC 3d8372e658e5788ce0332e9a024b524e https://www.encodeproject.org/files/ENCFF000XDF/@@download/ENCFF000XDF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDG fastq reads ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 829751669 Peggy Farnham, USC e8a54d879e87d07455e9d72e61ae96cc https://www.encodeproject.org/files/ENCFF000XDG/@@download/ENCFF000XDG.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VIE bed narrowPeak peaks ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 79026 Peggy Farnham, USC 6966e3f6fb92af849a17e99931aa5616 https://www.encodeproject.org/files/ENCFF001VIE/@@download/ENCFF001VIE.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CSG bed narrowPeak optimal idr thresholded peaks ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 129469 ENCODE Consortium Analysis Working Group ef923581e8e46df0f60fbaf91c75ca6e https://www.encodeproject.org/files/ENCFF002CSG/@@download/ENCFF002CSG.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF613HOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSG 424727 ENCODE Consortium e5fdb26f3e8edadfa654f4fe61d2ec13 https://www.encodeproject.org/files/ENCFF613HOZ/@@download/ENCFF613HOZ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000NUE bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NUP 767215355 Richard Myers, HAIB de6102fdd7cea95ee3ffb167f20dd5f8 https://www.encodeproject.org/files/ENCFF000NUE/@@download/ENCFF000NUE.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUF bigWig raw signal ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 46782844 Richard Myers, HAIB 6800d6701c8a15837dad739afc46fb42 https://www.encodeproject.org/files/ENCFF000NUF/@@download/ENCFF000NUF.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NUG bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NUV 1467733019 Richard Myers, HAIB d1c4960436d792ffb13c0e3ea2512930 https://www.encodeproject.org/files/ENCFF000NUG/@@download/ENCFF000NUG.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUH bigWig raw signal ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 37621433 Richard Myers, HAIB 8fb63e9748bdf41924a9b1c2c75dcbbc https://www.encodeproject.org/files/ENCFF000NUH/@@download/ENCFF000NUH.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NUI bigBed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWR 1240079 Richard Myers, HAIB 80cbf5826ae8fb03e210b4315746a0c2 https://www.encodeproject.org/files/ENCFF000NUI/@@download/ENCFF000NUI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUJ bigBed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWT 1398547 Richard Myers, HAIB 3367ddbe03b4a01aa3738973647c3917 https://www.encodeproject.org/files/ENCFF000NUJ/@@download/ENCFF000NUJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NUP fastq reads ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 817324317 Richard Myers, HAIB 0d40a7dda221db39df5f700461adcce9 https://www.encodeproject.org/files/ENCFF000NUP/@@download/ENCFF000NUP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF000NUV fastq reads ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1833866718 Richard Myers, HAIB f9af8da2f2d96881d40bf376af3a4132 https://www.encodeproject.org/files/ENCFF000NUV/@@download/ENCFF000NUV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWR bed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 639770 Richard Myers, HAIB ffc9f7f1d08a6b46b7ecf325d2dde29f https://www.encodeproject.org/files/ENCFF001TWR/@@download/ENCFF001TWR.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TWT bed broadPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 795385 Richard Myers, HAIB d8f165e304d9b15630734e741144d970 https://www.encodeproject.org/files/ENCFF001TWT/@@download/ENCFF001TWT.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGV bed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 709523 ENCODE Consortium Analysis Working Group 5f6fc43a9cd69bd28ade083a5de1345c https://www.encodeproject.org/files/ENCFF002CGV/@@download/ENCFF002CGV.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF752SDC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGV 1462375 ENCODE Consortium 95b641af2f21c1878502356767859911 https://www.encodeproject.org/files/ENCFF752SDC/@@download/ENCFF752SDC.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF164HPP bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF643CGH 1016464040 ENCODE Processing Pipeline dd202998ee9336b9c89232ddda1e4d94 https://www.encodeproject.org/files/ENCFF164HPP/@@download/ENCFF164HPP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF340QCB bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF643CGH 605403432 ENCODE Processing Pipeline a80036176a0198b54323b81a6b7a6291 https://www.encodeproject.org/files/ENCFF340QCB/@@download/ENCFF340QCB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF648JQE bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF643CGH 2219242915 ENCODE Processing Pipeline 2f714083c8999767f3ef03c3191a166c https://www.encodeproject.org/files/ENCFF648JQE/@@download/ENCFF648JQE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF426RGL bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF643CGH 1063401678 ENCODE Processing Pipeline 1347ae3db03cd269565f27aee07a837f https://www.encodeproject.org/files/ENCFF426RGL/@@download/ENCFF426RGL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF305MCD bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF807MUK 2212662930 ENCODE Processing Pipeline 39319642285caa5cbace946cb8e59900 https://www.encodeproject.org/files/ENCFF305MCD/@@download/ENCFF305MCD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF243EMB bam unfiltered alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF807MUK 1015061524 ENCODE Processing Pipeline 9ceccf039c0714807577e427672f1968 https://www.encodeproject.org/files/ENCFF243EMB/@@download/ENCFF243EMB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF336DPP bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF807MUK 599972860 ENCODE Processing Pipeline de3fbd6fa17003548fd81a6525c7a16a https://www.encodeproject.org/files/ENCFF336DPP/@@download/ENCFF336DPP.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF069CYJ bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF807MUK 1059531670 ENCODE Processing Pipeline fb9bf7af59c63d3cf24e264b3a7fad64 https://www.encodeproject.org/files/ENCFF069CYJ/@@download/ENCFF069CYJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF113ZCS bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF426RGL, ENCFF562HPN 452817550 ENCODE Processing Pipeline b84ae1a1a56a6b67b30a647e9bc43d81 https://www.encodeproject.org/files/ENCFF113ZCS/@@download/ENCFF113ZCS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF980LUU bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF340QCB, ENCFF438FFV 452768594 ENCODE Processing Pipeline 7b21b5743b1bfdbc6ac52df270203f11 https://www.encodeproject.org/files/ENCFF980LUU/@@download/ENCFF980LUU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF243MXE bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340QCB, ENCFF426RGL, ENCFF438FFV, ENCFF562HPN 798868594 ENCODE Processing Pipeline 690690656ac8cf3df50ccbf014310519 https://www.encodeproject.org/files/ENCFF243MXE/@@download/ENCFF243MXE.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF244IRL bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF426RGL, ENCFF562HPN 425055723 ENCODE Processing Pipeline e7fed54902e4f20b1e3e1c4d79621672 https://www.encodeproject.org/files/ENCFF244IRL/@@download/ENCFF244IRL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF876OVA bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF537FLG 11368561 ENCODE Processing Pipeline 33b4f027bd22edb61fca51c6490e592c https://www.encodeproject.org/files/ENCFF876OVA/@@download/ENCFF876OVA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF303NPO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF210IRE 917961 ENCODE Processing Pipeline 615d514fda8e07174b310bbccbe7da2f https://www.encodeproject.org/files/ENCFF303NPO/@@download/ENCFF303NPO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF004UMO bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF340QCB, ENCFF438FFV 4875831 ENCODE Processing Pipeline 37fdfc466c60bbb1e60f823b42950b51 https://www.encodeproject.org/files/ENCFF004UMO/@@download/ENCFF004UMO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF809GCI bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF340QCB, ENCFF438FFV 256386794 ENCODE Processing Pipeline 62270604a990c8c0ec76188c4baf01ed https://www.encodeproject.org/files/ENCFF809GCI/@@download/ENCFF809GCI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF007KQM bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF426RGL, ENCFF562HPN 4978842 ENCODE Processing Pipeline ec6d3385fe3bdce11b017a3b7daca7e9 https://www.encodeproject.org/files/ENCFF007KQM/@@download/ENCFF007KQM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF731FFI bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF007KQM 11178446 ENCODE Processing Pipeline b1b47a1988ca490c387b960116ceb3f0 https://www.encodeproject.org/files/ENCFF731FFI/@@download/ENCFF731FFI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF107LDM bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340QCB, ENCFF426RGL, ENCFF438FFV, ENCFF562HPN 743337356 ENCODE Processing Pipeline b1e91d3ce500741ca50b16f8d61462ba https://www.encodeproject.org/files/ENCFF107LDM/@@download/ENCFF107LDM.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF537FLG bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340QCB, ENCFF426RGL, ENCFF438FFV, ENCFF562HPN 5831805 ENCODE Processing Pipeline da98fc462cc97cb34cdeeab01d24d221 https://www.encodeproject.org/files/ENCFF537FLG/@@download/ENCFF537FLG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF874WCG bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004UMO 10459895 ENCODE Processing Pipeline 1a75cfbc3db6819d28ebef0a3741762e https://www.encodeproject.org/files/ENCFF874WCG/@@download/ENCFF874WCG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF210IRE bed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004UMO, ENCFF007KQM, ENCFF419RSJ, ENCFF537FLG 523118 ENCODE Processing Pipeline 3e995ce721c960159c52b7b6ac6311e6 https://www.encodeproject.org/files/ENCFF210IRE/@@download/ENCFF210IRE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF358VLN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF864NSW 1396053 ENCODE Processing Pipeline 63f9d741098980e49b1ed76759bdbb08 https://www.encodeproject.org/files/ENCFF358VLN/@@download/ENCFF358VLN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF864NSW bed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004UMO, ENCFF007KQM, ENCFF419RSJ, ENCFF537FLG 680984 ENCODE Processing Pipeline 5b9d91a0c2616a19e725712cbf3da5b3 https://www.encodeproject.org/files/ENCFF864NSW/@@download/ENCFF864NSW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF617OMU bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 580914430 ENCODE Processing Pipeline a2ff5307f482e4b4376ac944e1cfe0af https://www.encodeproject.org/files/ENCFF617OMU/@@download/ENCFF617OMU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF297DXO bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069CYJ, ENCFF336DPP, ENCFF837IOW, ENCFF958RTR 840400196 ENCODE Processing Pipeline 7bbb8b12faa8f63e6623329491344908 https://www.encodeproject.org/files/ENCFF297DXO/@@download/ENCFF297DXO.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF015HUU bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 419359493 ENCODE Processing Pipeline 259c90b9d387dce6ec031d20c1d0c5bd https://www.encodeproject.org/files/ENCFF015HUU/@@download/ENCFF015HUU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF598ZQZ bigWig signal p-value ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 426928771 ENCODE Processing Pipeline 34a8b38f4151c45c5ee39ee8ed55cde9 https://www.encodeproject.org/files/ENCFF598ZQZ/@@download/ENCFF598ZQZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF867PUJ bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 253263158 ENCODE Processing Pipeline a5c2bc075b0b9392918b5de46222a2c3 https://www.encodeproject.org/files/ENCFF867PUJ/@@download/ENCFF867PUJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF541IHJ bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069CYJ, ENCFF336DPP, ENCFF837IOW, ENCFF958RTR 5864276 ENCODE Processing Pipeline 5f62787550a4cb664c2557fd2c74ea74 https://www.encodeproject.org/files/ENCFF541IHJ/@@download/ENCFF541IHJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF362LNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF394DLH 1408629 ENCODE Processing Pipeline d59697824cfc13ca8e986c1f81ea117a https://www.encodeproject.org/files/ENCFF362LNI/@@download/ENCFF362LNI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF381QKO bigWig fold change over control ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069CYJ, ENCFF336DPP, ENCFF837IOW, ENCFF958RTR 749663617 ENCODE Processing Pipeline f7c22dc5fd84bc486d28a637ed283945 https://www.encodeproject.org/files/ENCFF381QKO/@@download/ENCFF381QKO.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF113PGY bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 4772938 ENCODE Processing Pipeline 23ac45a229bdbfcc354141bafd672330 https://www.encodeproject.org/files/ENCFF113PGY/@@download/ENCFF113PGY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF839DFW bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF113PGY 10319384 ENCODE Processing Pipeline 5d4c8dfcb18b3ac8b6ef1686eef36ddc https://www.encodeproject.org/files/ENCFF839DFW/@@download/ENCFF839DFW.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF259ITT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF736ACY 920948 ENCODE Processing Pipeline fd88e004e31b15b5614fabbecbc33152 https://www.encodeproject.org/files/ENCFF259ITT/@@download/ENCFF259ITT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF394DLH bed narrowPeak optimal idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF113PGY, ENCFF541IHJ, ENCFF920WQE 687507 ENCODE Processing Pipeline 665d97b52ab2270bef1179c705616a9b https://www.encodeproject.org/files/ENCFF394DLH/@@download/ENCFF394DLH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF073XWD bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF920WQE 11121711 ENCODE Processing Pipeline 70a8a21e92947d8561aebe92c62e9f35 https://www.encodeproject.org/files/ENCFF073XWD/@@download/ENCFF073XWD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF920WQE bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 4923420 ENCODE Processing Pipeline bdc4d79c3e5fa3cc217fe423ad027dd9 https://www.encodeproject.org/files/ENCFF920WQE/@@download/ENCFF920WQE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF373LCM bigBed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF541IHJ 13591070 ENCODE Processing Pipeline b745b756b075a7e430760b80c67720db https://www.encodeproject.org/files/ENCFF373LCM/@@download/ENCFF373LCM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF736ACY bed narrowPeak conservative idr thresholded peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF113PGY, ENCFF541IHJ, ENCFF920WQE 525301 ENCODE Processing Pipeline ef9afa74aef1504f73fcfbacb65d45aa https://www.encodeproject.org/files/ENCFF736ACY/@@download/ENCFF736ACY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF800PQN bam unfiltered alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEM, ENCFF807MUK 602504579 ENCODE Processing Pipeline f347e4eae20696f9163cbd90b753ca74 https://www.encodeproject.org/files/ENCFF800PQN/@@download/ENCFF800PQN.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF375DUO bam unfiltered alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEO, ENCFF807MUK 1079547321 ENCODE Processing Pipeline 826298254952966f1e5686dd4554a7a8 https://www.encodeproject.org/files/ENCFF375DUO/@@download/ENCFF375DUO.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EEM fastq reads ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 393473613 Michael Snyder, Stanford d4e7563e50b70b442af81e549cf52cf4 https://www.encodeproject.org/files/ENCFF002EEM/@@download/ENCFF002EEM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EEO fastq reads ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 745346433 Michael Snyder, Stanford bbd1ce69eedb4ef9f90caa8d12008fe2 https://www.encodeproject.org/files/ENCFF002EEO/@@download/ENCFF002EEO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF325ZZV bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEO, ENCFF807MUK 758123969 ENCODE Processing Pipeline 66c51935d94256da68254bb4526482d0 https://www.encodeproject.org/files/ENCFF325ZZV/@@download/ENCFF325ZZV.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF637BQA bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEM, ENCFF807MUK 426428817 ENCODE Processing Pipeline b2f5219555d1abbea519e01bfccfc87c https://www.encodeproject.org/files/ENCFF637BQA/@@download/ENCFF637BQA.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF939VJC bigWig signal p-value ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF637BQA, ENCFF879OQC 419708932 ENCODE Processing Pipeline 75ff92b5e560e59a4b25c969e0be4596 https://www.encodeproject.org/files/ENCFF939VJC/@@download/ENCFF939VJC.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF462EED bigWig signal p-value ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF325ZZV, ENCFF335IPE 459659947 ENCODE Processing Pipeline a39eae6d82df4630d89346476eef149d https://www.encodeproject.org/files/ENCFF462EED/@@download/ENCFF462EED.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF891QLR bigWig signal p-value ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF325ZZV, ENCFF335IPE, ENCFF637BQA, ENCFF879OQC 903080969 ENCODE Processing Pipeline 3f08984e78efbe8f769478882b45e952 https://www.encodeproject.org/files/ENCFF891QLR/@@download/ENCFF891QLR.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF398ERH bigWig fold change over control ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF325ZZV, ENCFF335IPE 402573108 ENCODE Processing Pipeline 64e9b2af0e03ed8d0ce9a0a966e83ca1 https://www.encodeproject.org/files/ENCFF398ERH/@@download/ENCFF398ERH.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF016RMV bigWig fold change over control ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF637BQA, ENCFF879OQC 267087160 ENCODE Processing Pipeline 19250b48304bb38e5c834cda18041955 https://www.encodeproject.org/files/ENCFF016RMV/@@download/ENCFF016RMV.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF733OEF bigWig fold change over control ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF325ZZV, ENCFF335IPE, ENCFF637BQA, ENCFF879OQC 785419838 ENCODE Processing Pipeline 82c9fb050ea69edc24cb9f43e44a9718 https://www.encodeproject.org/files/ENCFF733OEF/@@download/ENCFF733OEF.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF391TOS bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEM, ENCFF643CGH 426035349 ENCODE Processing Pipeline b02d2f7407e7b79719d291bffb4aebe1 https://www.encodeproject.org/files/ENCFF391TOS/@@download/ENCFF391TOS.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF454SYR bam unfiltered alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEO, ENCFF643CGH 1083671571 ENCODE Processing Pipeline 91a7a10394f135f0ebff6a1110c46e58 https://www.encodeproject.org/files/ENCFF454SYR/@@download/ENCFF454SYR.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF280GUI bam unfiltered alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEM, ENCFF643CGH 605100577 ENCODE Processing Pipeline 7c341b583cd504c88b4e23b16e21c394 https://www.encodeproject.org/files/ENCFF280GUI/@@download/ENCFF280GUI.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF104FDK bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEO, ENCFF643CGH 757518102 ENCODE Processing Pipeline a5d0d6bb26db63941a0186f1728c9676 https://www.encodeproject.org/files/ENCFF104FDK/@@download/ENCFF104FDK.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF186KKE bigWig signal p-value ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF104FDK, ENCFF156FED 580930017 ENCODE Processing Pipeline 9c40d1ee530fd09bca61251a449a4915 https://www.encodeproject.org/files/ENCFF186KKE/@@download/ENCFF186KKE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF227HLE bigWig signal p-value ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF391TOS, ENCFF577FNG 418423814 ENCODE Processing Pipeline 4461fab5817fdaeb8db62de9dcd4ef12 https://www.encodeproject.org/files/ENCFF227HLE/@@download/ENCFF227HLE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF810HXM bigWig signal p-value ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF104FDK, ENCFF156FED, ENCFF391TOS, ENCFF577FNG 876651189 ENCODE Processing Pipeline 453550ac5e19cb477528c639085601b8 https://www.encodeproject.org/files/ENCFF810HXM/@@download/ENCFF810HXM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF603CNR bigWig fold change over control ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF391TOS, ENCFF577FNG 268479178 ENCODE Processing Pipeline be0aaccdb79cd7507e5a9c29b9c47e2d https://www.encodeproject.org/files/ENCFF603CNR/@@download/ENCFF603CNR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF818CWL bigWig fold change over control ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF104FDK, ENCFF156FED 393593914 ENCODE Processing Pipeline 2fd85fde8db9e31c8cca98929c369443 https://www.encodeproject.org/files/ENCFF818CWL/@@download/ENCFF818CWL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF189CHX bigWig fold change over control ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF104FDK, ENCFF156FED, ENCFF391TOS, ENCFF577FNG 762689962 ENCODE Processing Pipeline b2471afe47610f0d81e6f8512f530cb8 https://www.encodeproject.org/files/ENCFF189CHX/@@download/ENCFF189CHX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF011UME bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF104FDK, ENCFF156FED 5339246 ENCODE Processing Pipeline 76d46cedbade493fc17087d7e3f3af3f https://www.encodeproject.org/files/ENCFF011UME/@@download/ENCFF011UME.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF256FBL bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF104FDK, ENCFF156FED, ENCFF391TOS, ENCFF577FNG 6315389 ENCODE Processing Pipeline ff1ce6f46dd7069367f9630eaf9dbd48 https://www.encodeproject.org/files/ENCFF256FBL/@@download/ENCFF256FBL.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF145FAT bigBed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF011UME 13007370 ENCODE Processing Pipeline 21ccfdf9178eb8daa1bde21325604299 https://www.encodeproject.org/files/ENCFF145FAT/@@download/ENCFF145FAT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF684AAF bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF391TOS, ENCFF577FNG 4772185 ENCODE Processing Pipeline 955ab1162757e3d9a347994a5eaa169d https://www.encodeproject.org/files/ENCFF684AAF/@@download/ENCFF684AAF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF103XPI bigBed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF684AAF 10704763 ENCODE Processing Pipeline 9af6c31d8f478191058446a23bdbc6d4 https://www.encodeproject.org/files/ENCFF103XPI/@@download/ENCFF103XPI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF240HNQ bigBed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF256FBL 13306815 ENCODE Processing Pipeline 0558ae9bebd81b56e369ef982944b6f6 https://www.encodeproject.org/files/ENCFF240HNQ/@@download/ENCFF240HNQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF755APC bed narrowPeak optimal idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF011UME, ENCFF256FBL, ENCFF419RSJ, ENCFF684AAF 240083 ENCODE Processing Pipeline c2e8f3a974b9271bb9c3c4c369464a5f https://www.encodeproject.org/files/ENCFF755APC/@@download/ENCFF755APC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF115GNB bigBed narrowPeak conservative idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF296WNS 383544 ENCODE Processing Pipeline 090e0642bced1b3dd7871da50abe994b https://www.encodeproject.org/files/ENCFF115GNB/@@download/ENCFF115GNB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF296WNS bed narrowPeak conservative idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF011UME, ENCFF256FBL, ENCFF419RSJ, ENCFF684AAF 179091 ENCODE Processing Pipeline b04fc4e6d80b4fd88e036f3e3c507805 https://www.encodeproject.org/files/ENCFF296WNS/@@download/ENCFF296WNS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF734QWM bigBed narrowPeak optimal idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF755APC 468996 ENCODE Processing Pipeline 2a43b5c2df70fe23c3e470aceafb9d68 https://www.encodeproject.org/files/ENCFF734QWM/@@download/ENCFF734QWM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF872LIG bigBed narrowPeak conservative idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF852XSD 390190 ENCODE Processing Pipeline d57c67f75db56e2b4b4e9485d932168d https://www.encodeproject.org/files/ENCFF872LIG/@@download/ENCFF872LIG.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF852XSD bed narrowPeak conservative idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF314SAN, ENCFF334IIE, ENCFF973JKQ 184332 ENCODE Processing Pipeline b21abaa25f0e180cdc091b710e026b1d https://www.encodeproject.org/files/ENCFF852XSD/@@download/ENCFF852XSD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF581YKY bed narrowPeak optimal idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF314SAN, ENCFF334IIE, ENCFF973JKQ 252531 ENCODE Processing Pipeline de1c71d16bed9d96dcff38981ba5dd30 https://www.encodeproject.org/files/ENCFF581YKY/@@download/ENCFF581YKY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF823QCH bigBed narrowPeak optimal idr thresholded peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF581YKY 484540 ENCODE Processing Pipeline 30234b80837e3dcfa503d28874a67173 https://www.encodeproject.org/files/ENCFF823QCH/@@download/ENCFF823QCH.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF079XRX bigBed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF314SAN 13021079 ENCODE Processing Pipeline 0e74b7c7cf2e074799723f6f8f814aa6 https://www.encodeproject.org/files/ENCFF079XRX/@@download/ENCFF079XRX.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF915ZJN bigBed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF973JKQ 13320460 ENCODE Processing Pipeline 21ad89854883da9e0765c79245d563cb https://www.encodeproject.org/files/ENCFF915ZJN/@@download/ENCFF915ZJN.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF334IIE bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF637BQA, ENCFF879OQC 4718507 ENCODE Processing Pipeline 15b4c3e9c786715520f4db3583147756 https://www.encodeproject.org/files/ENCFF334IIE/@@download/ENCFF334IIE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF973JKQ bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF325ZZV, ENCFF335IPE, ENCFF637BQA, ENCFF879OQC 6329329 ENCODE Processing Pipeline a968bd6eaed6ee269cd59eec2944eff7 https://www.encodeproject.org/files/ENCFF973JKQ/@@download/ENCFF973JKQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF122FAI bigBed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF334IIE 10641922 ENCODE Processing Pipeline 226d260993948b2831e637e049c3733e https://www.encodeproject.org/files/ENCFF122FAI/@@download/ENCFF122FAI.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF314SAN bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF325ZZV, ENCFF335IPE 5353439 ENCODE Processing Pipeline a666fc7ec79b9e3fd8021d4423ecd24c https://www.encodeproject.org/files/ENCFF314SAN/@@download/ENCFF314SAN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF068DPU fastq reads ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 1 76 single-ended 2838855536 Bradley Bernstein, Broad 5f379b0f5299a35ce49fe896af7b9951 SRA:SRR5832828 https://www.encodeproject.org/files/ENCFF068DPU/@@download/ENCFF068DPU.fastq.gz Illumina HiSeq 2500 /files/ENCFF625FBR/, /files/ENCFF878ZLP/ released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, inconsistent control run_type, low read depth, antibody characterized with exemption NTR biosample ENCFF971UJG fastq reads ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 1 76 paired-ended 1 ENCFF779FOP 1331443643 Bradley Bernstein, Broad 4415df8fbbc524fde638280219ef3b28 SRA:SRR5832827 https://www.encodeproject.org/files/ENCFF971UJG/@@download/ENCFF971UJG.fastq.gz Illumina HiSeq 2500 /files/ENCFF458ASE/, /files/ENCFF615LEB/ released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF779FOP fastq reads ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 1 76 paired-ended 2 ENCFF971UJG 1347358542 Bradley Bernstein, Broad ce28facc7c67bdf1b91b4d14d7039c1f SRA:SRR5832827 https://www.encodeproject.org/files/ENCFF779FOP/@@download/ENCFF779FOP.fastq.gz Illumina HiSeq 2500 /files/ENCFF072EIX/, /files/ENCFF443LZC/ released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF552IZN bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 76 ENCFF643CGH, ENCFF971UJG 927706943 ENCODE Processing Pipeline 0d40562b51b63873ac11b1a2d448d02c https://www.encodeproject.org/files/ENCFF552IZN/@@download/ENCFF552IZN.bam GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF171OSV bam unfiltered alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 76 ENCFF643CGH, ENCFF971UJG 1589861352 ENCODE Processing Pipeline ce54614a59a912031debf523fe34e777 https://www.encodeproject.org/files/ENCFF171OSV/@@download/ENCFF171OSV.bam GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF901OUZ bam unfiltered alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 76 ENCFF807MUK, ENCFF971UJG 1582206637 ENCODE Processing Pipeline 3c66ec36e44a503ce727208e3cb693aa https://www.encodeproject.org/files/ENCFF901OUZ/@@download/ENCFF901OUZ.bam hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF968BOJ bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 76 ENCFF807MUK, ENCFF971UJG 926952079 ENCODE Processing Pipeline a29881318eb216c02b7c0e410a4eac56 https://www.encodeproject.org/files/ENCFF968BOJ/@@download/ENCFF968BOJ.bam hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF880VOR bam unfiltered alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 76 ENCFF068DPU, ENCFF807MUK 3216204999 ENCODE Processing Pipeline add3a36e8139215a315413d7d0b9c3ec https://www.encodeproject.org/files/ENCFF880VOR/@@download/ENCFF880VOR.bam hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF901HAO bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 76 ENCFF068DPU, ENCFF807MUK 2299640247 ENCODE Processing Pipeline f123c72173c8c608a868f2c51424a307 https://www.encodeproject.org/files/ENCFF901HAO/@@download/ENCFF901HAO.bam hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF385HYG bam unfiltered alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 76 ENCFF068DPU, ENCFF643CGH 3225195576 ENCODE Processing Pipeline 44a0cef93b310da1079a3446f3edc95b https://www.encodeproject.org/files/ENCFF385HYG/@@download/ENCFF385HYG.bam GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF909EAW bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 76 ENCFF068DPU, ENCFF643CGH 2303077943 ENCODE Processing Pipeline 963e57a9f540b7fa7126265661513446 https://www.encodeproject.org/files/ENCFF909EAW/@@download/ENCFF909EAW.bam GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF323DHO bigWig signal p-value ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO 1288261112 ENCODE Processing Pipeline 4e22977aad0c8b825101e5258d2b7bc7 https://www.encodeproject.org/files/ENCFF323DHO/@@download/ENCFF323DHO.bigWig hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF550ZUW bigWig signal p-value ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO, ENCFF968BOJ 1331996160 ENCODE Processing Pipeline e9710ca68c3dd86f8f1c806398be8f65 https://www.encodeproject.org/files/ENCFF550ZUW/@@download/ENCFF550ZUW.bigWig hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF384UCP bigWig signal p-value ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF538MGJ, ENCFF673QQK, ENCFF968BOJ 978280734 ENCODE Processing Pipeline a1f3e4d81ceb4c342202aaff61d0b16c https://www.encodeproject.org/files/ENCFF384UCP/@@download/ENCFF384UCP.bigWig hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF334GZK bigWig fold change over control ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF538MGJ, ENCFF673QQK, ENCFF968BOJ 717158660 ENCODE Processing Pipeline cd3ba9ec7e8f9d844e83dcb5fb0548d5 https://www.encodeproject.org/files/ENCFF334GZK/@@download/ENCFF334GZK.bigWig hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF304RPN bigWig fold change over control ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO 1395519176 ENCODE Processing Pipeline 63017d33586f2a0a7c60d7c5ecc9ce2e https://www.encodeproject.org/files/ENCFF304RPN/@@download/ENCFF304RPN.bigWig hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF846CHN bigWig fold change over control ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO, ENCFF968BOJ 1595169991 ENCODE Processing Pipeline 450113b0bce9c0580e47d191c43a1c5b https://www.encodeproject.org/files/ENCFF846CHN/@@download/ENCFF846CHN.bigWig hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF164PEN bigBed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF139FDW 11021693 ENCODE Processing Pipeline 4fd9b84ea396c3cf33e2aaa7a1e47f8b https://www.encodeproject.org/files/ENCFF164PEN/@@download/ENCFF164PEN.bigBed hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF507HLD bed narrowPeak conservative idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF001TDO, ENCFF139FDW, ENCFF252AKV, ENCFF978OGV 25403 ENCODE Processing Pipeline 6fb0959b4294603f1cad33b0ef0bceb2 https://www.encodeproject.org/files/ENCFF507HLD/@@download/ENCFF507HLD.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF890FLE bigBed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF252AKV 13378022 ENCODE Processing Pipeline 47f901420d93dd155dc765dc4c3da48b https://www.encodeproject.org/files/ENCFF890FLE/@@download/ENCFF890FLE.bigBed hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF822FLF bigBed narrowPeak conservative idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF507HLD 142945 ENCODE Processing Pipeline a7c5911b1f67bbc392be3119644a8d3e https://www.encodeproject.org/files/ENCFF822FLF/@@download/ENCFF822FLF.bigBed hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF640LEB bed narrowPeak optimal idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF001TDO, ENCFF139FDW, ENCFF252AKV, ENCFF978OGV 35158 ENCODE Processing Pipeline bd8c5e4680bcbbd808ba239c174fd1a6 https://www.encodeproject.org/files/ENCFF640LEB/@@download/ENCFF640LEB.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF687YXR bigBed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF978OGV 13460581 ENCODE Processing Pipeline 85c65b136e87ab7d3f49784b34a345e7 https://www.encodeproject.org/files/ENCFF687YXR/@@download/ENCFF687YXR.bigBed hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF139FDW bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF538MGJ, ENCFF673QQK, ENCFF968BOJ 5120884 ENCODE Processing Pipeline bc245f6d720ba44499fa9852c7d02b48 https://www.encodeproject.org/files/ENCFF139FDW/@@download/ENCFF139FDW.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF978OGV bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO 6664109 ENCODE Processing Pipeline 08fc006cd3816c33384447ecec84d699 https://www.encodeproject.org/files/ENCFF978OGV/@@download/ENCFF978OGV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF252AKV bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO, ENCFF968BOJ 6943679 ENCODE Processing Pipeline 4fe51760ab26c3d50366d50dc24e236e https://www.encodeproject.org/files/ENCFF252AKV/@@download/ENCFF252AKV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF597QAT bigBed narrowPeak optimal idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF640LEB 169396 ENCODE Processing Pipeline 752b4878235fbde8c77fe63d7631f3cb https://www.encodeproject.org/files/ENCFF597QAT/@@download/ENCFF597QAT.bigBed hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF093XEF bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF171MQP, ENCFF614ONL, ENCFF909EAW 6618039 ENCODE Processing Pipeline 0edacdf60c51624280a0f5870d9d9e16 https://www.encodeproject.org/files/ENCFF093XEF/@@download/ENCFF093XEF.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF280JJA bed narrowPeak conservative idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF090MFL, ENCFF093XEF, ENCFF419RSJ, ENCFF948DTB 26030 ENCODE Processing Pipeline 4db5677477501373f7724376d3f5eaea https://www.encodeproject.org/files/ENCFF280JJA/@@download/ENCFF280JJA.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF362XPL bigWig signal p-value ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF171MQP, ENCFF614ONL, ENCFF909EAW 1317624355 ENCODE Processing Pipeline 275073dbfff4bb97080b0ef788b3c791 https://www.encodeproject.org/files/ENCFF362XPL/@@download/ENCFF362XPL.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF095FOY bigWig fold change over control ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF171MQP, ENCFF614ONL, ENCFF909EAW 1395860431 ENCODE Processing Pipeline 32c935e335c5b567df0c8da69f2287fa https://www.encodeproject.org/files/ENCFF095FOY/@@download/ENCFF095FOY.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF090MFL bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF171MQP, ENCFF552IZN, ENCFF614ONL, ENCFF909EAW 6898090 ENCODE Processing Pipeline d98969a1392072d932ab0523cdcaddb0 https://www.encodeproject.org/files/ENCFF090MFL/@@download/ENCFF090MFL.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF448WKA bigBed narrowPeak conservative idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF280JJA 146486 ENCODE Processing Pipeline 511301402afe8f6e127a6d1016a6522c https://www.encodeproject.org/files/ENCFF448WKA/@@download/ENCFF448WKA.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF433QTB bigWig signal p-value ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF171MQP, ENCFF552IZN, ENCFF614ONL 1125665592 ENCODE Processing Pipeline 3a0aec8c0c2d204e2bfd0f0455271828 https://www.encodeproject.org/files/ENCFF433QTB/@@download/ENCFF433QTB.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF555LUO bigWig signal p-value ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF171MQP, ENCFF552IZN, ENCFF614ONL, ENCFF909EAW 1418903039 ENCODE Processing Pipeline 5dc88d0314378306a7610ee82caad0f5 https://www.encodeproject.org/files/ENCFF555LUO/@@download/ENCFF555LUO.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF038FJE bigWig fold change over control ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF171MQP, ENCFF552IZN, ENCFF614ONL 713927973 ENCODE Processing Pipeline 1595f04db1f34061e2eff8f243b301a9 https://www.encodeproject.org/files/ENCFF038FJE/@@download/ENCFF038FJE.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF190VXQ bigWig fold change over control ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF171MQP, ENCFF552IZN, ENCFF614ONL, ENCFF909EAW 1599413941 ENCODE Processing Pipeline e8fb82921b27d6522191e788758cffa0 https://www.encodeproject.org/files/ENCFF190VXQ/@@download/ENCFF190VXQ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF948DTB bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF171MQP, ENCFF552IZN, ENCFF614ONL 4977524 ENCODE Processing Pipeline d9fd5cfa3435d59f2a0e3f6519c1dd69 https://www.encodeproject.org/files/ENCFF948DTB/@@download/ENCFF948DTB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF033EEO bigBed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF948DTB 11003203 ENCODE Processing Pipeline 6326f1326c0696ff4c77cf6b8188f80f https://www.encodeproject.org/files/ENCFF033EEO/@@download/ENCFF033EEO.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF670HMY bigBed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF093XEF 13504030 ENCODE Processing Pipeline cf7f53e0bf923430a990d5b49dd8161b https://www.encodeproject.org/files/ENCFF670HMY/@@download/ENCFF670HMY.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF752KSD bigBed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF090MFL 13430664 ENCODE Processing Pipeline 7208fe5b7e0505e6113b932de583b587 https://www.encodeproject.org/files/ENCFF752KSD/@@download/ENCFF752KSD.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF643ZSI bed narrowPeak optimal idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF090MFL, ENCFF093XEF, ENCFF419RSJ, ENCFF948DTB 34275 ENCODE Processing Pipeline 10a169b7d8c59dee2aabb5f34a24b1dd https://www.encodeproject.org/files/ENCFF643ZSI/@@download/ENCFF643ZSI.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF361HXB bigBed narrowPeak optimal idr thresholded peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1, 2 ENCFF643ZSI 169384 ENCODE Processing Pipeline b160742642a30186a74911e9153160de https://www.encodeproject.org/files/ENCFF361HXB/@@download/ENCFF361HXB.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF960QEF bam unfiltered alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 50 ENCFF323JYW, ENCFF807MUK 1418589086 ENCODE Processing Pipeline 06283d40912a68d08ca073677f3a012b https://www.encodeproject.org/files/ENCFF960QEF/@@download/ENCFF960QEF.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF041KQZ bam unfiltered alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 50 ENCFF338QMC, ENCFF807MUK 1809259736 ENCODE Processing Pipeline 5852b8cb5586bf6409b571a779f4a223 https://www.encodeproject.org/files/ENCFF041KQZ/@@download/ENCFF041KQZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF338QMC fastq reads ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 1 50 single-ended 1692816862 Richard Myers, HAIB 0926dec6f316252f767f556182878610 SRA:SRR5339594 https://www.encodeproject.org/files/ENCFF338QMC/@@download/ENCFF338QMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF381LXJ/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF323JYW fastq reads ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 1 50 single-ended 1311682725 Richard Myers, HAIB 125bba5efa1d6eb328090b451286d95a SRA:SRR5339595 https://www.encodeproject.org/files/ENCFF323JYW/@@download/ENCFF323JYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF752XCV/ released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF728PLX bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 50 ENCFF323JYW, ENCFF807MUK 1085353508 ENCODE Processing Pipeline dcb128edd2f7fef282c7dd32b9aeabd4 https://www.encodeproject.org/files/ENCFF728PLX/@@download/ENCFF728PLX.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF360HZC bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 50 ENCFF338QMC, ENCFF807MUK 1380961502 ENCODE Processing Pipeline 3d77b5e6ad9ace25a1f5b90b6518a89e https://www.encodeproject.org/files/ENCFF360HZC/@@download/ENCFF360HZC.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF841YSI bigWig signal p-value ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF360HZC, ENCFF853BBD 745933226 ENCODE Processing Pipeline 607fb28f3c83e729806e212a19857ec8 https://www.encodeproject.org/files/ENCFF841YSI/@@download/ENCFF841YSI.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF705MGB bigWig signal p-value ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF360HZC, ENCFF423QHQ, ENCFF728PLX, ENCFF853BBD 1397036893 ENCODE Processing Pipeline fe6b017f860beb7fd34678eafb2daffe https://www.encodeproject.org/files/ENCFF705MGB/@@download/ENCFF705MGB.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF848IKC bigWig fold change over control ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF360HZC, ENCFF853BBD 617766958 ENCODE Processing Pipeline 7ab0477547e0dd1735f5b5860f759c37 https://www.encodeproject.org/files/ENCFF848IKC/@@download/ENCFF848IKC.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF936YPZ bigBed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF663NEE 13207837 ENCODE Processing Pipeline 82aa505275ba26833a14fbd2a6b99eae https://www.encodeproject.org/files/ENCFF936YPZ/@@download/ENCFF936YPZ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF930TQF bigWig fold change over control ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF360HZC, ENCFF423QHQ, ENCFF728PLX, ENCFF853BBD 1312503988 ENCODE Processing Pipeline a4b91980ea5e7882d7c3bc8f97f040c5 https://www.encodeproject.org/files/ENCFF930TQF/@@download/ENCFF930TQF.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF278HXD bigBed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF055PQZ 11302131 ENCODE Processing Pipeline 6e6b8944567df73787f3b61b27185f11 https://www.encodeproject.org/files/ENCFF278HXD/@@download/ENCFF278HXD.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF372YPM bigBed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF550XLN 13382288 ENCODE Processing Pipeline 648828eca201f1043077e1358abb3df7 https://www.encodeproject.org/files/ENCFF372YPM/@@download/ENCFF372YPM.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF764UVK bigWig fold change over control ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF423QHQ, ENCFF728PLX 530750992 ENCODE Processing Pipeline 6ee5e1b1177b9172556225535e8ededf https://www.encodeproject.org/files/ENCFF764UVK/@@download/ENCFF764UVK.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF055PQZ bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF360HZC, ENCFF853BBD 5883152 ENCODE Processing Pipeline f8d5515a78518aeadbe36d0619397008 https://www.encodeproject.org/files/ENCFF055PQZ/@@download/ENCFF055PQZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF522YJN bigWig signal p-value ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF423QHQ, ENCFF728PLX 720933039 ENCODE Processing Pipeline 4f3ddc8992f869321f8ea983b096b787 https://www.encodeproject.org/files/ENCFF522YJN/@@download/ENCFF522YJN.bigWig hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF663NEE bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF423QHQ, ENCFF728PLX 6098875 ENCODE Processing Pipeline fe497ba7bd418d9567736e0ba2d93435 https://www.encodeproject.org/files/ENCFF663NEE/@@download/ENCFF663NEE.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF550XLN bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF360HZC, ENCFF423QHQ, ENCFF728PLX, ENCFF853BBD 7018079 ENCODE Processing Pipeline 09367fe7c36c0f196360ad26e43ca8f1 https://www.encodeproject.org/files/ENCFF550XLN/@@download/ENCFF550XLN.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF338QKW bam unfiltered alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 50 ENCFF323JYW, ENCFF643CGH 1423360311 ENCODE Processing Pipeline af5b179d0e106ca7924f7168459e5b72 https://www.encodeproject.org/files/ENCFF338QKW/@@download/ENCFF338QKW.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF440ASH bam unfiltered alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 50 ENCFF338QMC, ENCFF643CGH 1815844682 ENCODE Processing Pipeline fbb3f9a893134b645642c58470d55899 https://www.encodeproject.org/files/ENCFF440ASH/@@download/ENCFF440ASH.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF188KZY bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 50 ENCFF323JYW, ENCFF643CGH 1085042868 ENCODE Processing Pipeline c9e9a90f1a12e8a3d22f4ec96d050ae3 https://www.encodeproject.org/files/ENCFF188KZY/@@download/ENCFF188KZY.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF733CGU bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 50 ENCFF338QMC, ENCFF643CGH 1380741053 ENCODE Processing Pipeline 1206ed8a6469f2a238483c21e49d992e https://www.encodeproject.org/files/ENCFF733CGU/@@download/ENCFF733CGU.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF338DWL bigWig signal p-value ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF667XXT, ENCFF733CGU 783396915 ENCODE Processing Pipeline 04cc239a74ac5b8ddf182345795f6932 https://www.encodeproject.org/files/ENCFF338DWL/@@download/ENCFF338DWL.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF279VON bigWig signal p-value ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF018PFX, ENCFF188KZY 671314777 ENCODE Processing Pipeline 028bc4d9926e7b3a57ea640a641fdfa7 https://www.encodeproject.org/files/ENCFF279VON/@@download/ENCFF279VON.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF893GZL bigWig signal p-value ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF018PFX, ENCFF188KZY, ENCFF667XXT, ENCFF733CGU 1312475859 ENCODE Processing Pipeline f68ed1e16c12966c87954b26eb5c560a https://www.encodeproject.org/files/ENCFF893GZL/@@download/ENCFF893GZL.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF840PGX bigWig fold change over control ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF018PFX, ENCFF188KZY 515373551 ENCODE Processing Pipeline c29711b2de8dbf35f60fee1d9ad713d4 https://www.encodeproject.org/files/ENCFF840PGX/@@download/ENCFF840PGX.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF049LNQ bigWig fold change over control ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF667XXT, ENCFF733CGU 669501406 ENCODE Processing Pipeline ba9a5a12673b2c287b7ea41c3d0797bf https://www.encodeproject.org/files/ENCFF049LNQ/@@download/ENCFF049LNQ.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF201IMK bigWig fold change over control ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF018PFX, ENCFF188KZY, ENCFF667XXT, ENCFF733CGU 1265630690 ENCODE Processing Pipeline 8727f88482d764e2d553fd30a274c0a0 https://www.encodeproject.org/files/ENCFF201IMK/@@download/ENCFF201IMK.bigWig GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF462GSP bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF018PFX, ENCFF188KZY 5935315 ENCODE Processing Pipeline a35003ec39b231d82b9466f9b22be971 https://www.encodeproject.org/files/ENCFF462GSP/@@download/ENCFF462GSP.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF774DGU bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF018PFX, ENCFF188KZY, ENCFF667XXT, ENCFF733CGU 6912143 ENCODE Processing Pipeline 03cd1923ccf41b1f69ab9ae9d73f4c3f https://www.encodeproject.org/files/ENCFF774DGU/@@download/ENCFF774DGU.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF818HEX bigBed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF462GSP 13204477 ENCODE Processing Pipeline 75433c18764d58d9d4f0a2bc2305125d https://www.encodeproject.org/files/ENCFF818HEX/@@download/ENCFF818HEX.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF235EXR bigBed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF514YYG 11268444 ENCODE Processing Pipeline 13565ede28864b20aac592b5c8699998 https://www.encodeproject.org/files/ENCFF235EXR/@@download/ENCFF235EXR.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF514YYG bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF667XXT, ENCFF733CGU 5644817 ENCODE Processing Pipeline cca14cf79a6de0bed8b8053340dda318 https://www.encodeproject.org/files/ENCFF514YYG/@@download/ENCFF514YYG.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF521AXS bigBed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF774DGU 13398247 ENCODE Processing Pipeline a6634ecb99ebe317970b1822c9e3096a https://www.encodeproject.org/files/ENCFF521AXS/@@download/ENCFF521AXS.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF307NNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF464QAL 411672 ENCODE Processing Pipeline 2e895d8f986314878075650ffc82702e https://www.encodeproject.org/files/ENCFF307NNJ/@@download/ENCFF307NNJ.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF464QAL bed narrowPeak optimal idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF462GSP, ENCFF514YYG, ENCFF774DGU 205241 ENCODE Processing Pipeline 1dc750a0565891fdea24c456805bb8cc https://www.encodeproject.org/files/ENCFF464QAL/@@download/ENCFF464QAL.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF282PDD bigBed narrowPeak conservative idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF002VCK 285229 ENCODE Processing Pipeline e21d8c385558705770bba3ea9fbef42f https://www.encodeproject.org/files/ENCFF282PDD/@@download/ENCFF282PDD.bigBed GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF002VCK bed narrowPeak conservative idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF462GSP, ENCFF514YYG, ENCFF774DGU 120282 ENCODE Processing Pipeline 1813f2f43ccda56ee127de3cbbb1ae62 https://www.encodeproject.org/files/ENCFF002VCK/@@download/ENCFF002VCK.bed.gz GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF568LSV bed narrowPeak conservative idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF001TDO, ENCFF055PQZ, ENCFF550XLN, ENCFF663NEE 106127 ENCODE Processing Pipeline ed840930946f22d3f7138f6af0e98a2e https://www.encodeproject.org/files/ENCFF568LSV/@@download/ENCFF568LSV.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF909DWL bigBed narrowPeak conservative idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF568LSV 215323 ENCODE Processing Pipeline b4376a5b505998c3a3d3b1e19eab8bc4 https://www.encodeproject.org/files/ENCFF909DWL/@@download/ENCFF909DWL.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF040WYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF474AYD 364854 ENCODE Processing Pipeline 12f6c577e40b7bd7f6cd9662272ac98e https://www.encodeproject.org/files/ENCFF040WYZ/@@download/ENCFF040WYZ.bigBed hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF474AYD bed narrowPeak optimal idr thresholded peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF001TDO, ENCFF055PQZ, ENCFF550XLN, ENCFF663NEE 173942 ENCODE Processing Pipeline fdf7e1b69b888cb6b0a2bf175391d18b https://www.encodeproject.org/files/ENCFF474AYD/@@download/ENCFF474AYD.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF429YLD bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF807MUK 7823425735 ENCODE Processing Pipeline a7aa8b45f2834c9f3194423455037e94 https://www.encodeproject.org/files/ENCFF429YLD/@@download/ENCFF429YLD.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF095HVO bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF807MUK 8862063059 ENCODE Processing Pipeline f127b4361406af226cae2d9d8d68a046 https://www.encodeproject.org/files/ENCFF095HVO/@@download/ENCFF095HVO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF002DOL fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHS 4173922668 Michael Snyder, Stanford 8c941ca67137baf0ed8d34db395571eb SRA:SRR5111909 https://www.encodeproject.org/files/ENCFF002DOL/@@download/ENCFF002DOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, moderate library complexity ENCFF002DON fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHQ 3787803202 Michael Snyder, Stanford 32016f7a9248e2a0a89936562d0bb322 SRA:SRR5111910 https://www.encodeproject.org/files/ENCFF002DON/@@download/ENCFF002DON.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, moderate library complexity ENCFF483SXX bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2231464263 ENCODE Processing Pipeline 92266a21d01d35dc1d1697ce0a8b310e https://www.encodeproject.org/files/ENCFF483SXX/@@download/ENCFF483SXX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF002EHQ fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DON 3759298884 Michael Snyder, Stanford ee57310724b5225e7d89f76abd0d3db8 SRA:SRR5111910 https://www.encodeproject.org/files/ENCFF002EHQ/@@download/ENCFF002EHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, moderate library complexity ENCFF002EHS fastq reads ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOL 4203416462 Michael Snyder, Stanford 8334a61d9bea8cc842545c6a6807b3ee SRA:SRR5111909 https://www.encodeproject.org/files/ENCFF002EHS/@@download/ENCFF002EHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, moderate library complexity ENCFF093OOO bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2453436231 ENCODE Processing Pipeline a24235c63ecd840dfeb4013dce0f4332 https://www.encodeproject.org/files/ENCFF093OOO/@@download/ENCFF093OOO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF087YWI bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 6844032 ENCODE Processing Pipeline 56d51b07fede86d082c86048ddf73755 https://www.encodeproject.org/files/ENCFF087YWI/@@download/ENCFF087YWI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF048WFQ bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 6716942 ENCODE Processing Pipeline 3c3d50faed06c38edbebf2f7fa4630f3 https://www.encodeproject.org/files/ENCFF048WFQ/@@download/ENCFF048WFQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF314KVP bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 7250527 ENCODE Processing Pipeline 4d1c81159e1ff4f828d128616f213ad7 https://www.encodeproject.org/files/ENCFF314KVP/@@download/ENCFF314KVP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF318LYZ bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF087YWI 13479036 ENCODE Processing Pipeline e2991b69ad22865f49699e3666ac0ac4 https://www.encodeproject.org/files/ENCFF318LYZ/@@download/ENCFF318LYZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF599ACH bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF048WFQ 13328726 ENCODE Processing Pipeline 1f8d4a84abef05d9a2c4f57ef2780a26 https://www.encodeproject.org/files/ENCFF599ACH/@@download/ENCFF599ACH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF045ZSN bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF314KVP 13344149 ENCODE Processing Pipeline ada4b017ac091a9e1cbee07be48e1718 https://www.encodeproject.org/files/ENCFF045ZSN/@@download/ENCFF045ZSN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF159CAD bed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF048WFQ, ENCFF087YWI, ENCFF314KVP 299778 ENCODE Processing Pipeline 09bbd7133eeabdb3f955f7336850aea7 https://www.encodeproject.org/files/ENCFF159CAD/@@download/ENCFF159CAD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF770AQA bigBed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF159CAD 634084 ENCODE Processing Pipeline 97a621d07de87aa4a6d6c0a404a682a7 https://www.encodeproject.org/files/ENCFF770AQA/@@download/ENCFF770AQA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF241GZK bed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF048WFQ, ENCFF087YWI, ENCFF314KVP 458199 ENCODE Processing Pipeline bff9cb67e81f6eb1381e15b178bfc91a https://www.encodeproject.org/files/ENCFF241GZK/@@download/ENCFF241GZK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF578IIN bigBed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF241GZK 888344 ENCODE Processing Pipeline a0a2e05ffb2ac8ca98161a97cb329fdb https://www.encodeproject.org/files/ENCFF578IIN/@@download/ENCFF578IIN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF722RLB bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF807MUK 6908267504 ENCODE Processing Pipeline bea52de030784d17eb49c7a16af64327 https://www.encodeproject.org/files/ENCFF722RLB/@@download/ENCFF722RLB.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF457KTM bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF807MUK 5397525423 ENCODE Processing Pipeline 6b149a520e587de422171c4134eef915 https://www.encodeproject.org/files/ENCFF457KTM/@@download/ENCFF457KTM.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF652JUE bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 1811326491 ENCODE Processing Pipeline 0d9e5b339e2b6b1ae2e7f785d72d4918 https://www.encodeproject.org/files/ENCFF652JUE/@@download/ENCFF652JUE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF722YYU bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 1231504971 ENCODE Processing Pipeline 4da0457f32bc155f06d1bd7cad9aff22 https://www.encodeproject.org/files/ENCFF722YYU/@@download/ENCFF722YYU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF122SUL bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 1970469812 ENCODE Processing Pipeline 4e3e3d394fd57fff7f8297066ccc13eb https://www.encodeproject.org/files/ENCFF122SUL/@@download/ENCFF122SUL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF169IIH bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2220135104 ENCODE Processing Pipeline ad615efaa74d62fc2dde6326674cb9cd https://www.encodeproject.org/files/ENCFF169IIH/@@download/ENCFF169IIH.bigWig hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF963DFD bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 1330132767 ENCODE Processing Pipeline 7f894bd2cc3731ff3d8ff9e7452c94ab https://www.encodeproject.org/files/ENCFF963DFD/@@download/ENCFF963DFD.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF709NTS bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 2441506777 ENCODE Processing Pipeline 4453dae238be6e55d624427a144840e6 https://www.encodeproject.org/files/ENCFF709NTS/@@download/ENCFF709NTS.bigWig hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF829ZUO bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 6933097 ENCODE Processing Pipeline ef3eeda67e93024cd3191b4bc8360646 https://www.encodeproject.org/files/ENCFF829ZUO/@@download/ENCFF829ZUO.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF776OJT bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 6814256 ENCODE Processing Pipeline cf846e6c8a2c833b88c07cc3c1965f38 https://www.encodeproject.org/files/ENCFF776OJT/@@download/ENCFF776OJT.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF907EOY bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF829ZUO 13479466 ENCODE Processing Pipeline 713fd696d5dd478cc6870a3474ef8e50 https://www.encodeproject.org/files/ENCFF907EOY/@@download/ENCFF907EOY.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF195ZDI bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF776OJT 13332243 ENCODE Processing Pipeline 6435446fb0cddd4e3e7483591ff0494a https://www.encodeproject.org/files/ENCFF195ZDI/@@download/ENCFF195ZDI.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF779SCE bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF287SKW, ENCFF457KTM, ENCFF722RLB, ENCFF941TZZ 7263599 ENCODE Processing Pipeline 18b4441d6aa37fbac19a92e22057d458 https://www.encodeproject.org/files/ENCFF779SCE/@@download/ENCFF779SCE.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF002GDS bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF779SCE 13342484 ENCODE Processing Pipeline f0ef0b13add7528f60a99d3324bc5c13 https://www.encodeproject.org/files/ENCFF002GDS/@@download/ENCFF002GDS.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF369CTE bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF643CGH 7828444900 ENCODE Processing Pipeline c016a0e2c9d223ca18665c54c3753d60 https://www.encodeproject.org/files/ENCFF369CTE/@@download/ENCFF369CTE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF670VGQ bam unfiltered alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF643CGH 8871730513 ENCODE Processing Pipeline ff56ed8189d6b34b77ae2a803911e434 https://www.encodeproject.org/files/ENCFF670VGQ/@@download/ENCFF670VGQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF559OOA bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF643CGH 5406770191 ENCODE Processing Pipeline 9c2b4d2eb32d314bb114135eadc5c981 https://www.encodeproject.org/files/ENCFF559OOA/@@download/ENCFF559OOA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF083LQR bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF643CGH 6928381658 ENCODE Processing Pipeline af759fd50b2cd2d032bfe081138ebac2 https://www.encodeproject.org/files/ENCFF083LQR/@@download/ENCFF083LQR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF974WGJ bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF083LQR, ENCFF574BGV, ENCFF879YMO 1941693497 ENCODE Processing Pipeline ab00a60465be7f1020a5e800f802e72b https://www.encodeproject.org/files/ENCFF974WGJ/@@download/ENCFF974WGJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF035JFK bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF559OOA, ENCFF574BGV 1119880418 ENCODE Processing Pipeline bc71213722912ca49ec4a95fd7e6a935 https://www.encodeproject.org/files/ENCFF035JFK/@@download/ENCFF035JFK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF101ZYY bigWig signal p-value ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF083LQR, ENCFF559OOA, ENCFF574BGV, ENCFF879YMO 1900921526 ENCODE Processing Pipeline 59d17bb7e9ae44c189b9eb166f89c3e2 https://www.encodeproject.org/files/ENCFF101ZYY/@@download/ENCFF101ZYY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF820WUN bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF083LQR, ENCFF574BGV, ENCFF879YMO 1964264294 ENCODE Processing Pipeline 6ccbf43651cb63f65c64f88aa00a3f11 https://www.encodeproject.org/files/ENCFF820WUN/@@download/ENCFF820WUN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF794BDD bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF559OOA, ENCFF574BGV 1286032205 ENCODE Processing Pipeline 62cb980b0150aaa3e27e51530bf001bf https://www.encodeproject.org/files/ENCFF794BDD/@@download/ENCFF794BDD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF876DXW bigWig fold change over control ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF083LQR, ENCFF559OOA, ENCFF574BGV, ENCFF879YMO 2442745490 ENCODE Processing Pipeline 0061a453f7cfd9e44a41104c3724eb8e https://www.encodeproject.org/files/ENCFF876DXW/@@download/ENCFF876DXW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF376WWY bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF559OOA, ENCFF574BGV 6699798 ENCODE Processing Pipeline 121a59992b1f8f9a2f945bf456cc138c https://www.encodeproject.org/files/ENCFF376WWY/@@download/ENCFF376WWY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF064NLV bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF083LQR, ENCFF574BGV, ENCFF879YMO 6983798 ENCODE Processing Pipeline 5af869a078306bca92feada0d7c57ab9 https://www.encodeproject.org/files/ENCFF064NLV/@@download/ENCFF064NLV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF788NCL bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF064NLV 13500840 ENCODE Processing Pipeline 248feb1d6a633029fcc2b72b79f47251 https://www.encodeproject.org/files/ENCFF788NCL/@@download/ENCFF788NCL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF780CWW bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF083LQR, ENCFF559OOA, ENCFF574BGV, ENCFF879YMO 7254883 ENCODE Processing Pipeline b5f5ed7dd287778c210e937728db8391 https://www.encodeproject.org/files/ENCFF780CWW/@@download/ENCFF780CWW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF097ALZ bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF376WWY 13324357 ENCODE Processing Pipeline d26855aefeb7a66463faae2e3d031f87 https://www.encodeproject.org/files/ENCFF097ALZ/@@download/ENCFF097ALZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF780BKI bigBed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF780CWW 13367195 ENCODE Processing Pipeline e35438818bf874e525fa589907e91580 https://www.encodeproject.org/files/ENCFF780BKI/@@download/ENCFF780BKI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF302BKM bed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF064NLV, ENCFF376WWY, ENCFF419RSJ, ENCFF780CWW 298718 ENCODE Processing Pipeline 00b6bbac71a5ba953406742456749ee4 https://www.encodeproject.org/files/ENCFF302BKM/@@download/ENCFF302BKM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF231QJP bigBed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF302BKM 634076 ENCODE Processing Pipeline 34c8ae3688007028509c0dfdba530fd4 https://www.encodeproject.org/files/ENCFF231QJP/@@download/ENCFF231QJP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF830TFU bed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF064NLV, ENCFF376WWY, ENCFF419RSJ, ENCFF780CWW 447452 ENCODE Processing Pipeline 92781e8dd9618c16c8b470fd8d520e6c https://www.encodeproject.org/files/ENCFF830TFU/@@download/ENCFF830TFU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF531RDU bigBed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF830TFU 873996 ENCODE Processing Pipeline 3c2179211073e43fbd74177bba2f5065 https://www.encodeproject.org/files/ENCFF531RDU/@@download/ENCFF531RDU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF735XQT bed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF776OJT, ENCFF779SCE, ENCFF829ZUO 374394 ENCODE Processing Pipeline eddaf519deab6f458ba3799769f43a01 https://www.encodeproject.org/files/ENCFF735XQT/@@download/ENCFF735XQT.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF169ZWD bed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF776OJT, ENCFF779SCE, ENCFF829ZUO 244958 ENCODE Processing Pipeline d48e8002b562c88a9b055dea07239329 https://www.encodeproject.org/files/ENCFF169ZWD/@@download/ENCFF169ZWD.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF383VKS bigBed narrowPeak optimal idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF735XQT 618541 ENCODE Processing Pipeline ce60f5d8ca33b6693b5a2162459d66bc https://www.encodeproject.org/files/ENCFF383VKS/@@download/ENCFF383VKS.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF618ORZ bigBed narrowPeak conservative idr thresholded peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF169ZWD 451770 ENCODE Processing Pipeline 6a8a085b7fd93e6c389d5c01bb78e5b9 https://www.encodeproject.org/files/ENCFF618ORZ/@@download/ENCFF618ORZ.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF002BFK fastq reads ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1719435050 Richard Myers, HAIB 39669c8b22b70ecac3b31f27416003cd SRA:SRR5339028 https://www.encodeproject.org/files/ENCFF002BFK/@@download/ENCFF002BFK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF002BFL fastq reads ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1718537202 Richard Myers, HAIB c14272a4448e742611e2f99c32a735f2 SRA:SRR5339029 https://www.encodeproject.org/files/ENCFF002BFL/@@download/ENCFF002BFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BFW/ released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF237YJY bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 547038386 ENCODE Processing Pipeline c194b0c1a62360097159130a9cd42364 https://www.encodeproject.org/files/ENCFF237YJY/@@download/ENCFF237YJY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF056UMQ bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF787RYL, ENCFF901ETI, ENCFF943IIV 1125307116 ENCODE Processing Pipeline f3564079d9c277889bba6d2dda078c10 https://www.encodeproject.org/files/ENCFF056UMQ/@@download/ENCFF056UMQ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF006ANA bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 549596907 ENCODE Processing Pipeline e9007cb24d358ded99f8a10706816a8a https://www.encodeproject.org/files/ENCFF006ANA/@@download/ENCFF006ANA.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF869EQD bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF787RYL, ENCFF901ETI, ENCFF943IIV 1113266622 ENCODE Processing Pipeline 281ddd4f87bdbb0766ecc6bef4bfbb37 https://www.encodeproject.org/files/ENCFF869EQD/@@download/ENCFF869EQD.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF305DNA bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 5409592 ENCODE Processing Pipeline 93f75b21553a98bd1d29cf1e1165f03a https://www.encodeproject.org/files/ENCFF305DNA/@@download/ENCFF305DNA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF193TXF bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF021LAP 13468719 ENCODE Processing Pipeline 4bcca763ab6facf487a8511f0bc2aefc https://www.encodeproject.org/files/ENCFF193TXF/@@download/ENCFF193TXF.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF760IFZ bed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021LAP, ENCFF283QCO, ENCFF305DNA 370617 ENCODE Processing Pipeline fc6b1747ced34ffb5b0c695b5120610d https://www.encodeproject.org/files/ENCFF760IFZ/@@download/ENCFF760IFZ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF283QCO bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 5944397 ENCODE Processing Pipeline c5a1ccee1fd2fe27f7c40c0aa1289bb9 https://www.encodeproject.org/files/ENCFF283QCO/@@download/ENCFF283QCO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF021LAP bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF787RYL, ENCFF901ETI, ENCFF943IIV 6808412 ENCODE Processing Pipeline 3ca1d5387398cffdf3ce9dc1aa36d01f https://www.encodeproject.org/files/ENCFF021LAP/@@download/ENCFF021LAP.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF742XOI bed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021LAP, ENCFF283QCO, ENCFF305DNA 251620 ENCODE Processing Pipeline 7c8b9118a0087a075d49c5d7a0952c12 https://www.encodeproject.org/files/ENCFF742XOI/@@download/ENCFF742XOI.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF931JYI bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF305DNA 11266319 ENCODE Processing Pipeline 91c0348fda4cc8f82ccc4b302e6103d9 https://www.encodeproject.org/files/ENCFF931JYI/@@download/ENCFF931JYI.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF344FAD bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF283QCO 13342799 ENCODE Processing Pipeline 77fce65653886e7ebf484cb12c2e4234 https://www.encodeproject.org/files/ENCFF344FAD/@@download/ENCFF344FAD.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF862YUS bigBed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF742XOI 588516 ENCODE Processing Pipeline d3cb6c55e89c2838f06810a16145ff93 https://www.encodeproject.org/files/ENCFF862YUS/@@download/ENCFF862YUS.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF599YMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF760IFZ 780264 ENCODE Processing Pipeline ae5307b0b330e7502f3513d3e3cd2da0 https://www.encodeproject.org/files/ENCFF599YMQ/@@download/ENCFF599YMQ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF209SJM bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF807MUK 1317947874 ENCODE Processing Pipeline 810097b2a3d3f3fb148e106e5eade5e9 https://www.encodeproject.org/files/ENCFF209SJM/@@download/ENCFF209SJM.bam hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF901ETI bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF807MUK 1296681228 ENCODE Processing Pipeline 35ba72acf22f34470001a2bdf0d546f5 https://www.encodeproject.org/files/ENCFF901ETI/@@download/ENCFF901ETI.bam hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF762OJJ bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF223KCT, ENCFF859ZYD, ENCFF901ETI 1124519793 ENCODE Processing Pipeline 24d3daac5df34fc607c697f4a8a81f8e https://www.encodeproject.org/files/ENCFF762OJJ/@@download/ENCFF762OJJ.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF496IEH bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF223KCT, ENCFF859ZYD, ENCFF901ETI 6928369 ENCODE Processing Pipeline dbb91b95a00245ee35d1d669c7495045 https://www.encodeproject.org/files/ENCFF496IEH/@@download/ENCFF496IEH.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF761BJR bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF162BDU 11332032 ENCODE Processing Pipeline 614e9e14e30c5ca4fdfc0182f22da12c https://www.encodeproject.org/files/ENCFF761BJR/@@download/ENCFF761BJR.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF894KAJ bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 518558390 ENCODE Processing Pipeline 580839bc59ca7476ff2c9b2361120e82 https://www.encodeproject.org/files/ENCFF894KAJ/@@download/ENCFF894KAJ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF162BDU bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF223KCT 5588455 ENCODE Processing Pipeline 1f3567c960dc1a40d7c5fc384fd7a346 https://www.encodeproject.org/files/ENCFF162BDU/@@download/ENCFF162BDU.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF319PMQ bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 551365596 ENCODE Processing Pipeline a854de810f61820fdc338e5e153d0b19 https://www.encodeproject.org/files/ENCFF319PMQ/@@download/ENCFF319PMQ.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF400ILK bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 548123499 ENCODE Processing Pipeline 3cea2558a306b457525809e8785b99da https://www.encodeproject.org/files/ENCFF400ILK/@@download/ENCFF400ILK.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF486PYA bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF209SJM, ENCFF223KCT, ENCFF859ZYD, ENCFF901ETI 1117677730 ENCODE Processing Pipeline ccb59b051be0daa48aaa3a5a06f33c83 https://www.encodeproject.org/files/ENCFF486PYA/@@download/ENCFF486PYA.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF777XYO bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 6114774 ENCODE Processing Pipeline 591a63e89b91ba7784a1f2dd8d5bdeca https://www.encodeproject.org/files/ENCFF777XYO/@@download/ENCFF777XYO.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF434RBQ bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF777XYO 13374473 ENCODE Processing Pipeline 59be9eb7ab19be7c23d79d787420bd96 https://www.encodeproject.org/files/ENCFF434RBQ/@@download/ENCFF434RBQ.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF225HQM bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF496IEH 13471338 ENCODE Processing Pipeline d0c563870f4727d71cbbb07a584ad980 https://www.encodeproject.org/files/ENCFF225HQM/@@download/ENCFF225HQM.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF881CKS bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 554529088 ENCODE Processing Pipeline bbb04e5dbeea0676e6c160cc62fa7282 https://www.encodeproject.org/files/ENCFF881CKS/@@download/ENCFF881CKS.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF764IXV bam unfiltered alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF643CGH 1814203199 ENCODE Processing Pipeline d36503247090f781272786e660912649 https://www.encodeproject.org/files/ENCFF764IXV/@@download/ENCFF764IXV.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF496BNB bam unfiltered alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF643CGH 1821027299 ENCODE Processing Pipeline 9f53b239ac30df56fad4dfd6e04d19b7 https://www.encodeproject.org/files/ENCFF496BNB/@@download/ENCFF496BNB.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF472MGT bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF643CGH 1304221358 ENCODE Processing Pipeline 1a57275751cb5a7d4dac63ae6dffab03 https://www.encodeproject.org/files/ENCFF472MGT/@@download/ENCFF472MGT.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF383ODW bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF643CGH 1325427381 ENCODE Processing Pipeline 546db6ced2a21c9bdb1ad352c973b5bc https://www.encodeproject.org/files/ENCFF383ODW/@@download/ENCFF383ODW.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF499PMB bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF472MGT 593614813 ENCODE Processing Pipeline 7233236e658bca6693c5f6924539bc9e https://www.encodeproject.org/files/ENCFF499PMB/@@download/ENCFF499PMB.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF193MGP bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF383ODW, ENCFF747NOF 682213889 ENCODE Processing Pipeline cae254c8ce01fde75db50bf77baf03e6 https://www.encodeproject.org/files/ENCFF193MGP/@@download/ENCFF193MGP.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF461SOE bigWig signal p-value ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF383ODW, ENCFF472MGT, ENCFF747NOF 1130320012 ENCODE Processing Pipeline 5d128ec8c8a547d16321592248a75a74 https://www.encodeproject.org/files/ENCFF461SOE/@@download/ENCFF461SOE.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF662NZE bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF383ODW, ENCFF747NOF 509114173 ENCODE Processing Pipeline 368f6c9654bf425c150522509826f6bf https://www.encodeproject.org/files/ENCFF662NZE/@@download/ENCFF662NZE.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF394JES bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF472MGT 545472230 ENCODE Processing Pipeline 6f352a3bd0456248ec9618da83c45afa https://www.encodeproject.org/files/ENCFF394JES/@@download/ENCFF394JES.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF304SIN bigWig fold change over control ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF383ODW, ENCFF472MGT, ENCFF747NOF 1118934828 ENCODE Processing Pipeline a831312a3ba3ceef2c962f43a25d4273 https://www.encodeproject.org/files/ENCFF304SIN/@@download/ENCFF304SIN.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF142JGU bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF154WIU, ENCFF383ODW, ENCFF472MGT, ENCFF747NOF 6807601 ENCODE Processing Pipeline f8a8e242dabf5384a6717fcb92b9dd69 https://www.encodeproject.org/files/ENCFF142JGU/@@download/ENCFF142JGU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF012WTF bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF142JGU 13472859 ENCODE Processing Pipeline 410d4f87ef0f74a1e58b1426c6ec4c50 https://www.encodeproject.org/files/ENCFF012WTF/@@download/ENCFF012WTF.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF461IYM bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF673FMT 13349663 ENCODE Processing Pipeline aeac0d7526079e07f28ac31d5a7a9404 https://www.encodeproject.org/files/ENCFF461IYM/@@download/ENCFF461IYM.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF916QGP bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF383ODW, ENCFF747NOF 5411850 ENCODE Processing Pipeline bac99f3216ff62694517e4ddd8c6af68 https://www.encodeproject.org/files/ENCFF916QGP/@@download/ENCFF916QGP.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF018BOV bigBed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF916QGP 11277630 ENCODE Processing Pipeline 5ece84628e2065d43afd1c0fb5eda69c https://www.encodeproject.org/files/ENCFF018BOV/@@download/ENCFF018BOV.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF269LTR bed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF142JGU, ENCFF419RSJ, ENCFF673FMT, ENCFF916QGP 256651 ENCODE Processing Pipeline b49388341fbf59b8e2853648316facad https://www.encodeproject.org/files/ENCFF269LTR/@@download/ENCFF269LTR.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF673FMT bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF154WIU, ENCFF472MGT 5948761 ENCODE Processing Pipeline 9f096c41507cae83734ddc21e62ea0db https://www.encodeproject.org/files/ENCFF673FMT/@@download/ENCFF673FMT.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF592LKK bigBed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF269LTR 595704 ENCODE Processing Pipeline a16589d60a379b8316cf75d6b2d6ca09 https://www.encodeproject.org/files/ENCFF592LKK/@@download/ENCFF592LKK.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF745ANU bed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF142JGU, ENCFF419RSJ, ENCFF673FMT, ENCFF916QGP 382019 ENCODE Processing Pipeline cff6f88f836c9a4566acf3a4bc39d9a0 https://www.encodeproject.org/files/ENCFF745ANU/@@download/ENCFF745ANU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF482BSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF745ANU 797564 ENCODE Processing Pipeline 461623e0c7c3e9edced0ce13791a9d62 https://www.encodeproject.org/files/ENCFF482BSZ/@@download/ENCFF482BSZ.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF891RJI bigBed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF972SOG 451269 ENCODE Processing Pipeline 9b130066ec3c18c72ae181b010d4e7ff https://www.encodeproject.org/files/ENCFF891RJI/@@download/ENCFF891RJI.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF972SOG bed narrowPeak conservative idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF162BDU, ENCFF496IEH, ENCFF777XYO 229670 ENCODE Processing Pipeline 8e8a22cc5e08a12827fd8705e6db2cf8 https://www.encodeproject.org/files/ENCFF972SOG/@@download/ENCFF972SOG.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF746DYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF692GBM 589795 ENCODE Processing Pipeline 357d09e64f008ccf0f840245013fbc86 https://www.encodeproject.org/files/ENCFF746DYZ/@@download/ENCFF746DYZ.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF692GBM bed narrowPeak optimal idr thresholded peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF162BDU, ENCFF496IEH, ENCFF777XYO 337339 ENCODE Processing Pipeline 1acc555b446c6ccf848d0b6257a65ad6 https://www.encodeproject.org/files/ENCFF692GBM/@@download/ENCFF692GBM.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF280ZEV bam unfiltered alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF349XHH, ENCFF807MUK, ENCFF998XOV 4770001631 ENCODE Processing Pipeline bd5251bb66a893197b76e0170f62b9fa https://www.encodeproject.org/files/ENCFF280ZEV/@@download/ENCFF280ZEV.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF069RAV bam unfiltered alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF195DWB, ENCFF703FVJ, ENCFF807MUK 5591222609 ENCODE Processing Pipeline 5a89a72f511bb9fb2e3dfddac5330dbe https://www.encodeproject.org/files/ENCFF069RAV/@@download/ENCFF069RAV.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF998XOV fastq reads ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF349XHH 2208697032 Michael Snyder, Stanford f86e74c7ccb734e729e1f3ebe81bff85 https://www.encodeproject.org/files/ENCFF998XOV/@@download/ENCFF998XOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF349XHH fastq reads ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF998XOV 2142564149 Michael Snyder, Stanford 22c4c5494b804e497af1710809de7bff https://www.encodeproject.org/files/ENCFF349XHH/@@download/ENCFF349XHH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF703FVJ fastq reads ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF195DWB 2528782094 Michael Snyder, Stanford eabb084c855420a98e9f4d300cbb962e https://www.encodeproject.org/files/ENCFF703FVJ/@@download/ENCFF703FVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF195DWB fastq reads ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF703FVJ 2605360683 Michael Snyder, Stanford aae31d5908879fafca597fe606c93f6c https://www.encodeproject.org/files/ENCFF195DWB/@@download/ENCFF195DWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF298RPP bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF349XHH, ENCFF807MUK, ENCFF998XOV 3568892989 ENCODE Processing Pipeline bb5c10aedf32596116d87b0e229a89e3 https://www.encodeproject.org/files/ENCFF298RPP/@@download/ENCFF298RPP.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF695INR bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF195DWB, ENCFF703FVJ, ENCFF807MUK 4259733582 ENCODE Processing Pipeline 37985f249c9d73034ad12ced822324d7 https://www.encodeproject.org/files/ENCFF695INR/@@download/ENCFF695INR.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF076ZYV bigWig signal p-value ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF298RPP, ENCFF581ZJL 921076293 ENCODE Processing Pipeline 0f160b8bddf037bd5c737a2eaf95f954 https://www.encodeproject.org/files/ENCFF076ZYV/@@download/ENCFF076ZYV.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF482YDW bigWig signal p-value ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF695INR 1089540641 ENCODE Processing Pipeline 6bcf2d4191a0b3154df96a0574e0284b https://www.encodeproject.org/files/ENCFF482YDW/@@download/ENCFF482YDW.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF247DIC bigWig signal p-value ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF298RPP, ENCFF581ZJL, ENCFF695INR 1948336999 ENCODE Processing Pipeline 6fdb4f8c448bbf7f7d3dc0716d86eb2d https://www.encodeproject.org/files/ENCFF247DIC/@@download/ENCFF247DIC.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF224NCR bigWig fold change over control ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF298RPP, ENCFF581ZJL 1054183780 ENCODE Processing Pipeline ac59b19f55550a31ed3abc56a74a325b https://www.encodeproject.org/files/ENCFF224NCR/@@download/ENCFF224NCR.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF180CCM bigWig fold change over control ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF695INR 1112137682 ENCODE Processing Pipeline 426050a6aaabf117811f937a32ca607a https://www.encodeproject.org/files/ENCFF180CCM/@@download/ENCFF180CCM.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF868UXP bigWig fold change over control ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF298RPP, ENCFF581ZJL, ENCFF695INR 2009870110 ENCODE Processing Pipeline 48563b937d20c8d795542e492b3568a2 https://www.encodeproject.org/files/ENCFF868UXP/@@download/ENCFF868UXP.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF923WYM bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF298RPP, ENCFF581ZJL, ENCFF695INR 7143082 ENCODE Processing Pipeline fe318886d2865030fc712f4595cbadea https://www.encodeproject.org/files/ENCFF923WYM/@@download/ENCFF923WYM.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF939VKQ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF298RPP, ENCFF581ZJL 6452652 ENCODE Processing Pipeline 99eb1c6a796e6f18b5c580fbceb21067 https://www.encodeproject.org/files/ENCFF939VKQ/@@download/ENCFF939VKQ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF269CZZ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF695INR 6536831 ENCODE Processing Pipeline eb59420ac468be2b23c240c9cce56837 https://www.encodeproject.org/files/ENCFF269CZZ/@@download/ENCFF269CZZ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF734STL bigBed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF939VKQ 13316614 ENCODE Processing Pipeline 42bef5867d974014c8eda4ae83a4d8c1 https://www.encodeproject.org/files/ENCFF734STL/@@download/ENCFF734STL.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF276UFW bigBed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF269CZZ 11096778 ENCODE Processing Pipeline 7bc5a589ba2211e3291cbbcd451cd9a3 https://www.encodeproject.org/files/ENCFF276UFW/@@download/ENCFF276UFW.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF015PGL bigBed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF923WYM 13131133 ENCODE Processing Pipeline b184fbded71064352dcf4eaa7ff2538a https://www.encodeproject.org/files/ENCFF015PGL/@@download/ENCFF015PGL.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF583CIY bed narrowPeak optimal idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF269CZZ, ENCFF923WYM, ENCFF939VKQ 73618 ENCODE Processing Pipeline fab8230df4fac667f59e49a65da4daab https://www.encodeproject.org/files/ENCFF583CIY/@@download/ENCFF583CIY.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF091PDT bed narrowPeak conservative idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF269CZZ, ENCFF923WYM, ENCFF939VKQ 31175 ENCODE Processing Pipeline 761b6f3fee2318cdcfd0559d4dbe503a https://www.encodeproject.org/files/ENCFF091PDT/@@download/ENCFF091PDT.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF920ZAF bigBed narrowPeak conservative idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF091PDT 116581 ENCODE Processing Pipeline 1229c6c7f8c0d35e68efc74845a59eb4 https://www.encodeproject.org/files/ENCFF920ZAF/@@download/ENCFF920ZAF.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF215IMW bigBed narrowPeak optimal idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF583CIY 186578 ENCODE Processing Pipeline 48d5771014001770a5c9b48ebec20cfe https://www.encodeproject.org/files/ENCFF215IMW/@@download/ENCFF215IMW.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF919WAX bam unfiltered alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF195DWB, ENCFF643CGH, ENCFF703FVJ 5594185862 ENCODE Processing Pipeline 9ccc010fa7aef7c93acd929c2738f2a6 https://www.encodeproject.org/files/ENCFF919WAX/@@download/ENCFF919WAX.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF060FAH bam unfiltered alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF349XHH, ENCFF643CGH, ENCFF998XOV 4772462332 ENCODE Processing Pipeline 794d2b8ca590b9df4d1da952e3630d8a https://www.encodeproject.org/files/ENCFF060FAH/@@download/ENCFF060FAH.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF768DLZ bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF349XHH, ENCFF643CGH, ENCFF998XOV 3571417175 ENCODE Processing Pipeline c3231b5c8049ac300374dc13ab7df112 https://www.encodeproject.org/files/ENCFF768DLZ/@@download/ENCFF768DLZ.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF887EIG bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF195DWB, ENCFF643CGH, ENCFF703FVJ 4262652048 ENCODE Processing Pipeline cc7abe497aab54594c366b8a04834d62 https://www.encodeproject.org/files/ENCFF887EIG/@@download/ENCFF887EIG.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF553OIV bigWig signal p-value ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF768DLZ, ENCFF910IKB 930281523 ENCODE Processing Pipeline 80e36596b8db0298681894762e1ab663 https://www.encodeproject.org/files/ENCFF553OIV/@@download/ENCFF553OIV.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF239GVW bigWig signal p-value ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF887EIG 1145636008 ENCODE Processing Pipeline c205a634a11c86bf4a57a3630c181256 https://www.encodeproject.org/files/ENCFF239GVW/@@download/ENCFF239GVW.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF551LBC bigWig signal p-value ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF768DLZ, ENCFF887EIG, ENCFF910IKB 1583741763 ENCODE Processing Pipeline 26b9e01a71556cb249ef13fe4a278b33 https://www.encodeproject.org/files/ENCFF551LBC/@@download/ENCFF551LBC.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF567AOI bigWig fold change over control ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF768DLZ, ENCFF910IKB 1060002033 ENCODE Processing Pipeline 3e98b7dc5c24000ca113d87f234d64e8 https://www.encodeproject.org/files/ENCFF567AOI/@@download/ENCFF567AOI.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF024UHZ bigWig fold change over control ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF887EIG 1117187638 ENCODE Processing Pipeline 33fe637e7f399a60c4308d79239dd916 https://www.encodeproject.org/files/ENCFF024UHZ/@@download/ENCFF024UHZ.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF532SLM bigWig fold change over control ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF768DLZ, ENCFF887EIG, ENCFF910IKB 1986103028 ENCODE Processing Pipeline 8f6a0132d3825901ec4d6321bde6c657 https://www.encodeproject.org/files/ENCFF532SLM/@@download/ENCFF532SLM.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF722QUS bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF768DLZ, ENCFF910IKB 6350866 ENCODE Processing Pipeline c5c340d75c5905e940a5ecd3cd86f42d https://www.encodeproject.org/files/ENCFF722QUS/@@download/ENCFF722QUS.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF042IUA bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF887EIG 6383641 ENCODE Processing Pipeline 93acae56f072c13b0ad26545cba6880d https://www.encodeproject.org/files/ENCFF042IUA/@@download/ENCFF042IUA.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF041RZO bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF768DLZ, ENCFF887EIG, ENCFF910IKB 7105988 ENCODE Processing Pipeline 898a7ba3a0f866145e3ea74e331cea48 https://www.encodeproject.org/files/ENCFF041RZO/@@download/ENCFF041RZO.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF547VVP bigBed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF722QUS 13320911 ENCODE Processing Pipeline 28ab0f5b66b4348916aa77ab57bc84eb https://www.encodeproject.org/files/ENCFF547VVP/@@download/ENCFF547VVP.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF939DWO bigBed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF042IUA 11103696 ENCODE Processing Pipeline 6e1f68d20091e3342c0391f874fd7f45 https://www.encodeproject.org/files/ENCFF939DWO/@@download/ENCFF939DWO.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF744NSR bigBed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF041RZO 13140609 ENCODE Processing Pipeline 3f433c36cdf4e21a8fe34d4534c07ca2 https://www.encodeproject.org/files/ENCFF744NSR/@@download/ENCFF744NSR.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF162TOM bed narrowPeak conservative idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF041RZO, ENCFF042IUA, ENCFF419RSJ, ENCFF722QUS 30544 ENCODE Processing Pipeline d37855016be4d70db96e0870e78e6c06 https://www.encodeproject.org/files/ENCFF162TOM/@@download/ENCFF162TOM.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF563UXY bigBed narrowPeak conservative idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF162TOM 116669 ENCODE Processing Pipeline e71ded26ee474c656922d474a13cab07 https://www.encodeproject.org/files/ENCFF563UXY/@@download/ENCFF563UXY.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF821YMC bed narrowPeak optimal idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF041RZO, ENCFF042IUA, ENCFF419RSJ, ENCFF722QUS 74160 ENCODE Processing Pipeline c9c4220e59a9e0a0b0d9bae6f4b9f840 https://www.encodeproject.org/files/ENCFF821YMC/@@download/ENCFF821YMC.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF533DTY bigBed narrowPeak optimal idr thresholded peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF821YMC 187995 ENCODE Processing Pipeline 48e30cfeebf7a4c0c8b5eb49fc587486 https://www.encodeproject.org/files/ENCFF533DTY/@@download/ENCFF533DTY.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF000OIV bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OJH 1162511816 Richard Myers, HAIB e6512ad6a0f0aa9d2f9419b8ece63e1c https://www.encodeproject.org/files/ENCFF000OIV/@@download/ENCFF000OIV.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OIX bigBed broadPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAA 598489 Richard Myers, HAIB 93c5837b9782effe555824ebe7172bfa https://www.encodeproject.org/files/ENCFF000OIX/@@download/ENCFF000OIX.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OIY bigBed broadPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAB 413797 Richard Myers, HAIB d77ccb60458df6dff215185329eb3bfd https://www.encodeproject.org/files/ENCFF000OIY/@@download/ENCFF000OIY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OJA bigWig raw signal ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 1 116050641 Richard Myers, HAIB a0b2c59167f0c9bf5b567a0dc0ea5e6f https://www.encodeproject.org/files/ENCFF000OJA/@@download/ENCFF000OJA.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000OJB bigWig raw signal ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 1 17436472 Richard Myers, HAIB 57e3b2c323b0413827b4a87ac9830a75 https://www.encodeproject.org/files/ENCFF000OJB/@@download/ENCFF000OJB.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000OJC bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OJO 3691243295 Richard Myers, HAIB 9c875e14d2ccf1a36be9bd167c404d93 https://www.encodeproject.org/files/ENCFF000OJC/@@download/ENCFF000OJC.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OJH fastq reads ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 766980057 Richard Myers, HAIB 17385180bf0e63bd7d45396433fad783 https://www.encodeproject.org/files/ENCFF000OJH/@@download/ENCFF000OJH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OJO fastq reads ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 3269188538 Richard Myers, HAIB e92cf3b437b9be52180561419de78e08 https://www.encodeproject.org/files/ENCFF000OJO/@@download/ENCFF000OJO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UAA bed broadPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 1 376570 Richard Myers, HAIB 3288a0773d2b19c68cf4722b6ce5385f https://www.encodeproject.org/files/ENCFF001UAA/@@download/ENCFF001UAA.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UAB bed broadPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 1 226023 Richard Myers, HAIB 142c64f9af1d253aaaa9cdcfa277222a https://www.encodeproject.org/files/ENCFF001UAB/@@download/ENCFF001UAB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CII bed narrowPeak optimal idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 294121 ENCODE Consortium Analysis Working Group c7733269eacdd09fffc31f76aa356fdb https://www.encodeproject.org/files/ENCFF002CII/@@download/ENCFF002CII.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF538PLP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CII 646541 ENCODE Consortium b323fe93e324446d139a91427a5b594d https://www.encodeproject.org/files/ENCFF538PLP/@@download/ENCFF538PLP.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF809CJJ bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJH, ENCFF643CGH 630868193 ENCODE Processing Pipeline 2643f3f2b03b991bb1185d629afafa2a https://www.encodeproject.org/files/ENCFF809CJJ/@@download/ENCFF809CJJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF637LDY bam unfiltered alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJH, ENCFF643CGH 1004076794 ENCODE Processing Pipeline f22aa4e7bc98137e12fa4684808fa2de https://www.encodeproject.org/files/ENCFF637LDY/@@download/ENCFF637LDY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF074EVM bam unfiltered alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJO, ENCFF643CGH 3514859670 ENCODE Processing Pipeline 98d6ab5b8bc1f4da136471545ceeb093 https://www.encodeproject.org/files/ENCFF074EVM/@@download/ENCFF074EVM.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF843RIG bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJO, ENCFF643CGH 1592670350 ENCODE Processing Pipeline 2f449e819f0b8b3846c61f12e64fb2aa https://www.encodeproject.org/files/ENCFF843RIG/@@download/ENCFF843RIG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF500RDM bam unfiltered alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJH, ENCFF807MUK 1001495120 ENCODE Processing Pipeline 3849d83dd24fa9b24461f83632ef09bb https://www.encodeproject.org/files/ENCFF500RDM/@@download/ENCFF500RDM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF145BKE bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJH, ENCFF807MUK 626519123 ENCODE Processing Pipeline ff819259551815e4b6ad50bc988c87fd https://www.encodeproject.org/files/ENCFF145BKE/@@download/ENCFF145BKE.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF733ZQG bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJO, ENCFF807MUK 1584089321 ENCODE Processing Pipeline 2760655d872c93c044b5bb4211028435 https://www.encodeproject.org/files/ENCFF733ZQG/@@download/ENCFF733ZQG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF942IIR bam unfiltered alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJO, ENCFF807MUK 3533174042 ENCODE Processing Pipeline 2d1939a648397e894fc61d9ff810e07e https://www.encodeproject.org/files/ENCFF942IIR/@@download/ENCFF942IIR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF195KPO bigWig signal p-value ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF843RIG, ENCFF857FLV 350131374 ENCODE Processing Pipeline cc2be8fa6b37e6fd9a554dbc6d22ab17 https://www.encodeproject.org/files/ENCFF195KPO/@@download/ENCFF195KPO.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF676DFP bigWig signal p-value ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF809CJJ, ENCFF857FLV 321506569 ENCODE Processing Pipeline eec6290ae13ae1cdee0e66671093a50a https://www.encodeproject.org/files/ENCFF676DFP/@@download/ENCFF676DFP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF899BYT bigWig signal p-value ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809CJJ, ENCFF843RIG, ENCFF857FLV 332873636 ENCODE Processing Pipeline cd5186306a7abb787b45ad4d1fad35aa https://www.encodeproject.org/files/ENCFF899BYT/@@download/ENCFF899BYT.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF066PJA bigWig fold change over control ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF843RIG, ENCFF857FLV 499075758 ENCODE Processing Pipeline 6a0e02eeb8a04a6b5e294ef71d0d6b75 https://www.encodeproject.org/files/ENCFF066PJA/@@download/ENCFF066PJA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF568TYM bigWig fold change over control ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF809CJJ, ENCFF857FLV 257780409 ENCODE Processing Pipeline 3e01d96967d9397674ad5a77821919cd https://www.encodeproject.org/files/ENCFF568TYM/@@download/ENCFF568TYM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF601RJF bigWig fold change over control ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809CJJ, ENCFF843RIG, ENCFF857FLV 652803956 ENCODE Processing Pipeline 7bcfc0b53b4a63e9c1fcb74d1acd11fc https://www.encodeproject.org/files/ENCFF601RJF/@@download/ENCFF601RJF.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF804BGX bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF843RIG, ENCFF857FLV 5643976 ENCODE Processing Pipeline e595d0b59171e89cf8c987c0fe37e390 https://www.encodeproject.org/files/ENCFF804BGX/@@download/ENCFF804BGX.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF826QFX bigBed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF801RGY 13204531 ENCODE Processing Pipeline 21c1f6bd5b99bb5d3545b57848504a06 https://www.encodeproject.org/files/ENCFF826QFX/@@download/ENCFF826QFX.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF314KSF bigBed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF804BGX 13147443 ENCODE Processing Pipeline faa03ec621aad7abe4c1d1f41eed4eca https://www.encodeproject.org/files/ENCFF314KSF/@@download/ENCFF314KSF.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF301EQW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF680HDE 565483 ENCODE Processing Pipeline 0c0e816f5fa4eb715c112ba0d4d08328 https://www.encodeproject.org/files/ENCFF301EQW/@@download/ENCFF301EQW.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF219ENU bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF809CJJ, ENCFF857FLV 4861597 ENCODE Processing Pipeline e35868d5f7755a2391fcbfb7ff9491e2 https://www.encodeproject.org/files/ENCFF219ENU/@@download/ENCFF219ENU.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF818TTG bigBed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF219ENU 10627219 ENCODE Processing Pipeline ae82918af77008fb5b5360064af380e3 https://www.encodeproject.org/files/ENCFF818TTG/@@download/ENCFF818TTG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF680HDE bed narrowPeak conservative idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF219ENU, ENCFF419RSJ, ENCFF801RGY, ENCFF804BGX 316070 ENCODE Processing Pipeline 0616129f94e3a3da5b57f23e8b71f83b https://www.encodeproject.org/files/ENCFF680HDE/@@download/ENCFF680HDE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF801RGY bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809CJJ, ENCFF843RIG, ENCFF857FLV 6251324 ENCODE Processing Pipeline bc188e46eb615a8d41cf00246ea24227 https://www.encodeproject.org/files/ENCFF801RGY/@@download/ENCFF801RGY.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF004QBE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF113EFE 768258 ENCODE Processing Pipeline d26b6e820c67c862bff82bee3c69a905 https://www.encodeproject.org/files/ENCFF004QBE/@@download/ENCFF004QBE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF113EFE bed narrowPeak optimal idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF219ENU, ENCFF419RSJ, ENCFF801RGY, ENCFF804BGX 367215 ENCODE Processing Pipeline 6f08178e74ae00cdf916f3a453cfde93 https://www.encodeproject.org/files/ENCFF113EFE/@@download/ENCFF113EFE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF409RGL bigWig signal p-value ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF733ZQG, ENCFF864ASU 351844183 ENCODE Processing Pipeline b92a06e713a3c088bc8f6532729ccfe4 https://www.encodeproject.org/files/ENCFF409RGL/@@download/ENCFF409RGL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF447GJW bigWig fold change over control ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF733ZQG, ENCFF864ASU 499353632 ENCODE Processing Pipeline 2f7f39e000ab79e9998cecbd7be514c5 https://www.encodeproject.org/files/ENCFF447GJW/@@download/ENCFF447GJW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF512NID bigWig signal p-value ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF145BKE, ENCFF864ASU 301653114 ENCODE Processing Pipeline c7e47a8859b9708f7b9556dbf2570530 https://www.encodeproject.org/files/ENCFF512NID/@@download/ENCFF512NID.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF904XSE bigWig signal p-value ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF145BKE, ENCFF733ZQG, ENCFF864ASU 334073273 ENCODE Processing Pipeline 9fea3bb5d621ffe20c707c6d2e1accda https://www.encodeproject.org/files/ENCFF904XSE/@@download/ENCFF904XSE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF722XLG bigWig fold change over control ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF145BKE, ENCFF864ASU 257641028 ENCODE Processing Pipeline 99138107b781a305d7c14df54bc6c603 https://www.encodeproject.org/files/ENCFF722XLG/@@download/ENCFF722XLG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF724IWX bigWig fold change over control ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF145BKE, ENCFF733ZQG, ENCFF864ASU 653087600 ENCODE Processing Pipeline 832bec4a1f4a1b9b41b6df506e0b04ac https://www.encodeproject.org/files/ENCFF724IWX/@@download/ENCFF724IWX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF804FYW bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF145BKE, ENCFF864ASU 4862264 ENCODE Processing Pipeline 81c210f2e434273d63d76c77e2c57019 https://www.encodeproject.org/files/ENCFF804FYW/@@download/ENCFF804FYW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF827WWU bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF145BKE, ENCFF733ZQG, ENCFF864ASU 6259189 ENCODE Processing Pipeline 5314039f08e6990d6ee060dc520ae851 https://www.encodeproject.org/files/ENCFF827WWU/@@download/ENCFF827WWU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF454FOO bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF733ZQG, ENCFF864ASU 5667549 ENCODE Processing Pipeline 20e586fee7cf6030f97b80d9c546dab1 https://www.encodeproject.org/files/ENCFF454FOO/@@download/ENCFF454FOO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF711DLP bigBed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF454FOO 13162137 ENCODE Processing Pipeline 0bb0f1b0002ea4d6f8b886bf61f509e3 https://www.encodeproject.org/files/ENCFF711DLP/@@download/ENCFF711DLP.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF446JBQ bed narrowPeak conservative idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF454FOO, ENCFF804FYW, ENCFF827WWU 318856 ENCODE Processing Pipeline 1d96cc1eaf507ce51f6b867fbb7ff8e5 https://www.encodeproject.org/files/ENCFF446JBQ/@@download/ENCFF446JBQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF809HPK bed narrowPeak optimal idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF454FOO, ENCFF804FYW, ENCFF827WWU 365917 ENCODE Processing Pipeline b7a9062d6c2fb53b926482a3e1634e70 https://www.encodeproject.org/files/ENCFF809HPK/@@download/ENCFF809HPK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF279KUW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809HPK 764959 ENCODE Processing Pipeline 625ab2bf87c85e2f4cde0b8e548e9ee8 https://www.encodeproject.org/files/ENCFF279KUW/@@download/ENCFF279KUW.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF274QWG bigBed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF804FYW 10624632 ENCODE Processing Pipeline 114aa7673d4b62ef7c32033839bf4d49 https://www.encodeproject.org/files/ENCFF274QWG/@@download/ENCFF274QWG.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF933HXY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF446JBQ 568671 ENCODE Processing Pipeline 794dca86c91c8007b0813e4471614643 https://www.encodeproject.org/files/ENCFF933HXY/@@download/ENCFF933HXY.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF480ELK bigBed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF827WWU 13212666 ENCODE Processing Pipeline 45ee2404c974896fcf02f843fc61e5ba https://www.encodeproject.org/files/ENCFF480ELK/@@download/ENCFF480ELK.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RXG bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RXX 665949930 Vishwanath Iyer, UTA 4ee4d2531aa0d84b0d26896e4073ac3b https://www.encodeproject.org/files/ENCFF000RXG/@@download/ENCFF000RXG.bam hg19 archived mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000RXH bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RYB 578740139 Vishwanath Iyer, UTA c3ce8dfea8ff6a86af84e3ba68773c82 https://www.encodeproject.org/files/ENCFF000RXH/@@download/ENCFF000RXH.bam hg19 archived mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000RXP bigWig base overlap signal ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1040349348 Vishwanath Iyer, UTA 0f115aebff8f02108146e39cf5c6666e https://www.encodeproject.org/files/ENCFF000RXP/@@download/ENCFF000RXP.bigWig hg19 archived mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth ENCFF000RXQ bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTI 2064673 Vishwanath Iyer, UTA 07e274dc8ae237cd9e6a7695bca08797 https://www.encodeproject.org/files/ENCFF000RXQ/@@download/ENCFF000RXQ.bigBed hg19 archived mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000RXT bigWig signal ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 3750212548 Vishwanath Iyer, UTA 66fb1f71074d6da1db2f9e65c42e1431 https://www.encodeproject.org/files/ENCFF000RXT/@@download/ENCFF000RXT.bigWig hg19 archived mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000RXX fastq reads ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 863606111 Vishwanath Iyer, UTA 8f38a8469b51db5700430cc2dce2e866 https://www.encodeproject.org/files/ENCFF000RXX/@@download/ENCFF000RXX.fastq.gz Illumina Genome Analyzer /files/ENCFF000RYG/ released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000RYB fastq reads ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 641533280 Vishwanath Iyer, UTA 026e6c155721a161c5f85146297442b9 https://www.encodeproject.org/files/ENCFF000RYB/@@download/ENCFF000RYB.fastq.gz Illumina Genome Analyzer /files/ENCFF000RYG/ released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF001UTI bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1268710 Vishwanath Iyer, UTA 92cc26545cddc9889006c0bbab6c3a83 https://www.encodeproject.org/files/ENCFF001UTI/@@download/ENCFF001UTI.bed.gz hg19 archived mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF925UWG bam unfiltered alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYB, ENCFF643CGH 716023606 ENCODE Processing Pipeline 0cd22e7072c22c974cc3a2b91f44d8c9 https://www.encodeproject.org/files/ENCFF925UWG/@@download/ENCFF925UWG.bam GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF881HZD bam unfiltered alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RXX, ENCFF807MUK 954328126 ENCODE Processing Pipeline c3ed68056cea5280a35b13281f226c80 https://www.encodeproject.org/files/ENCFF881HZD/@@download/ENCFF881HZD.bam hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF999JKD bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYB, ENCFF807MUK 405105902 ENCODE Processing Pipeline 62223eabbed131c3c16b9654a40bbc4a https://www.encodeproject.org/files/ENCFF999JKD/@@download/ENCFF999JKD.bam hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF970PBQ bam unfiltered alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYB, ENCFF807MUK 714311760 ENCODE Processing Pipeline d2cafde3b0e59b7c87fa9bea116df214 https://www.encodeproject.org/files/ENCFF970PBQ/@@download/ENCFF970PBQ.bam hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF526FIW bam unfiltered alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RXX, ENCFF643CGH 956376770 ENCODE Processing Pipeline 09a50a78fb771594d8ac4809e96ea97d https://www.encodeproject.org/files/ENCFF526FIW/@@download/ENCFF526FIW.bam GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF265TUU bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYB, ENCFF643CGH 404849730 ENCODE Processing Pipeline e80c1df17bf1c7909f6e0f027a021610 https://www.encodeproject.org/files/ENCFF265TUU/@@download/ENCFF265TUU.bam GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF776OUN bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RXX, ENCFF807MUK 483561758 ENCODE Processing Pipeline 9213018d67c6e9a0cb9e2476b66b3595 https://www.encodeproject.org/files/ENCFF776OUN/@@download/ENCFF776OUN.bam hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF925XUX bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RXX, ENCFF643CGH 483314291 ENCODE Processing Pipeline d5f48ea3eb918bdc3aebacab4b3553c5 https://www.encodeproject.org/files/ENCFF925XUX/@@download/ENCFF925XUX.bam GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF583TCK bigWig signal p-value ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF140XGV, ENCFF776OUN 158288998 ENCODE Processing Pipeline 9a6647c7a95b552a11d1512247d3a25a https://www.encodeproject.org/files/ENCFF583TCK/@@download/ENCFF583TCK.bigWig hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF212UCU bigWig fold change over control ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF140XGV, ENCFF776OUN 122114218 ENCODE Processing Pipeline 1430f6dd5914adb62f8b01b8999f5fab https://www.encodeproject.org/files/ENCFF212UCU/@@download/ENCFF212UCU.bigWig hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF731YTE bed narrowPeak conservative idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF195CRO, ENCFF337SGV, ENCFF867DDR 754607 ENCODE Processing Pipeline 98c8fcd78257afb230c93ca4657f498e https://www.encodeproject.org/files/ENCFF731YTE/@@download/ENCFF731YTE.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF558OSB bigWig signal p-value ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF140XGV, ENCFF999JKD 155039361 ENCODE Processing Pipeline d6b564948b2a0877d48676d619f68982 https://www.encodeproject.org/files/ENCFF558OSB/@@download/ENCFF558OSB.bigWig hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF154PLW bigWig fold change over control ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF140XGV, ENCFF999JKD 99680678 ENCODE Processing Pipeline bedeafac8358cb59d0cf479afdc4fb59 https://www.encodeproject.org/files/ENCFF154PLW/@@download/ENCFF154PLW.bigWig hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF337SGV bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF140XGV, ENCFF776OUN, ENCFF999JKD 3896011 ENCODE Processing Pipeline e34a06311bef67ebdf1dc4476bc7579f https://www.encodeproject.org/files/ENCFF337SGV/@@download/ENCFF337SGV.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF053XIQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF731YTE 1363386 ENCODE Processing Pipeline 967e7b8c1c2099257ac3c4e5a00fa5f1 https://www.encodeproject.org/files/ENCFF053XIQ/@@download/ENCFF053XIQ.bigBed hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF131KNL bigWig signal p-value ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF140XGV, ENCFF776OUN, ENCFF999JKD 134469205 ENCODE Processing Pipeline 4310e8d230b6b31fb6f7db4461d93063 https://www.encodeproject.org/files/ENCFF131KNL/@@download/ENCFF131KNL.bigWig hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF281KQW bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF195CRO 6743680 ENCODE Processing Pipeline 689a017baedf4c462ffdbb79655d2077 https://www.encodeproject.org/files/ENCFF281KQW/@@download/ENCFF281KQW.bigBed hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF485OOP bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF337SGV 7657391 ENCODE Processing Pipeline 01edf2be8bbfce1ea65c82605be443a4 https://www.encodeproject.org/files/ENCFF485OOP/@@download/ENCFF485OOP.bigBed hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF410ZDY bigWig fold change over control ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF140XGV, ENCFF776OUN, ENCFF999JKD 211878705 ENCODE Processing Pipeline 85fd369d348f6f218522931f9ff91d6a https://www.encodeproject.org/files/ENCFF410ZDY/@@download/ENCFF410ZDY.bigWig hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF218XDI bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF867DDR 7082755 ENCODE Processing Pipeline a3856baafa09d9bc51d063cc304aa87f https://www.encodeproject.org/files/ENCFF218XDI/@@download/ENCFF218XDI.bigBed hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF717OVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF988IOQ 1492765 ENCODE Processing Pipeline 72efd76829a7ab1831824ea6b382d3c6 https://www.encodeproject.org/files/ENCFF717OVJ/@@download/ENCFF717OVJ.bigBed hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF867DDR bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF140XGV, ENCFF776OUN 3572577 ENCODE Processing Pipeline 330781b220a5c21ec41b1910fb1ef55f https://www.encodeproject.org/files/ENCFF867DDR/@@download/ENCFF867DDR.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF195CRO bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF140XGV, ENCFF999JKD 3290869 ENCODE Processing Pipeline bc79aa627629fe2c0e0dba7cc8faa03f https://www.encodeproject.org/files/ENCFF195CRO/@@download/ENCFF195CRO.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF988IOQ bed narrowPeak optimal idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF195CRO, ENCFF337SGV, ENCFF867DDR 835569 ENCODE Processing Pipeline 229b8bc3f4c57961455ee29ab67d5f55 https://www.encodeproject.org/files/ENCFF988IOQ/@@download/ENCFF988IOQ.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF863KTN bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF345PIA 7095168 ENCODE Processing Pipeline 03746f2c9242e7035b0adca92c3b1738 https://www.encodeproject.org/files/ENCFF863KTN/@@download/ENCFF863KTN.bigBed GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF289BRT bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248OEO 7662252 ENCODE Processing Pipeline 5226b198460411d43f1ee0c5c71c3dff https://www.encodeproject.org/files/ENCFF289BRT/@@download/ENCFF289BRT.bigBed GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF347HBQ bigWig signal p-value ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF265TUU, ENCFF534YMV, ENCFF925XUX 134406559 ENCODE Processing Pipeline 702d114d73322be424ec14b34f97b8b1 https://www.encodeproject.org/files/ENCFF347HBQ/@@download/ENCFF347HBQ.bigWig GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF957KCI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF670NSE 1501762 ENCODE Processing Pipeline 5667c7a0bb8946c0741bd66dff4df009 https://www.encodeproject.org/files/ENCFF957KCI/@@download/ENCFF957KCI.bigBed GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF970MEJ bigWig fold change over control ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF265TUU, ENCFF534YMV 100155266 ENCODE Processing Pipeline 547098008c0ccbc67233f69428de5c08 https://www.encodeproject.org/files/ENCFF970MEJ/@@download/ENCFF970MEJ.bigWig GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF273CND bigWig fold change over control ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF265TUU, ENCFF534YMV, ENCFF925XUX 211182590 ENCODE Processing Pipeline 6f7aca914f6d654d5a7f2907e76c254f https://www.encodeproject.org/files/ENCFF273CND/@@download/ENCFF273CND.bigWig GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF345PIA bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF534YMV, ENCFF925XUX 3577088 ENCODE Processing Pipeline 7f8e60a5702b673e3701567b88a95b8f https://www.encodeproject.org/files/ENCFF345PIA/@@download/ENCFF345PIA.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF938YTC bigBed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF554TIY 6748049 ENCODE Processing Pipeline 7594aa1a09c75b1e60aa7608bbb71a7f https://www.encodeproject.org/files/ENCFF938YTC/@@download/ENCFF938YTC.bigBed GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF526KUV bigWig signal p-value ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF265TUU, ENCFF534YMV 155019513 ENCODE Processing Pipeline d6566b2eb3308935592c6446f27d334d https://www.encodeproject.org/files/ENCFF526KUV/@@download/ENCFF526KUV.bigWig GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF058ZMC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF155PUW 1368315 ENCODE Processing Pipeline b5dd6edcea92ccd994b32b95e336305a https://www.encodeproject.org/files/ENCFF058ZMC/@@download/ENCFF058ZMC.bigBed GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF670NSE bed narrowPeak optimal idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248OEO, ENCFF345PIA, ENCFF419RSJ, ENCFF554TIY 839295 ENCODE Processing Pipeline fd34b2de83e7c0651052d035a4b56d08 https://www.encodeproject.org/files/ENCFF670NSE/@@download/ENCFF670NSE.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF554TIY bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF265TUU, ENCFF534YMV 3289037 ENCODE Processing Pipeline ef9f0fd7bfd9683a0c3c93373fe2d8dd https://www.encodeproject.org/files/ENCFF554TIY/@@download/ENCFF554TIY.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF248OEO bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF265TUU, ENCFF534YMV, ENCFF925XUX 3898373 ENCODE Processing Pipeline b0574cb3302e58c550ffebcb03dea1bc https://www.encodeproject.org/files/ENCFF248OEO/@@download/ENCFF248OEO.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF546KAD bigWig signal p-value ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF534YMV, ENCFF925XUX 158268901 ENCODE Processing Pipeline f106ecb61c55f46e0fd871cc8b7ecf24 https://www.encodeproject.org/files/ENCFF546KAD/@@download/ENCFF546KAD.bigWig GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF865MTK bigWig fold change over control ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF534YMV, ENCFF925XUX 122144313 ENCODE Processing Pipeline c73d8c0a3e6d1cbba563fc87fd685a92 https://www.encodeproject.org/files/ENCFF865MTK/@@download/ENCFF865MTK.bigWig GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF155PUW bed narrowPeak conservative idr thresholded peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248OEO, ENCFF345PIA, ENCFF419RSJ, ENCFF554TIY 756300 ENCODE Processing Pipeline 1d7be10e00f8b0978ab07b9b6096d127 https://www.encodeproject.org/files/ENCFF155PUW/@@download/ENCFF155PUW.bed.gz GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF989CXY bam unfiltered alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 50 ENCFF153EWU, ENCFF807MUK 1380239331 ENCODE Processing Pipeline 0ac618df5c3caf8e51a0ef557dec7451 https://www.encodeproject.org/files/ENCFF989CXY/@@download/ENCFF989CXY.bam hg19 released low read depth, antibody characterized with exemption ENCFF833RZP bam unfiltered alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 50 ENCFF204ZXN, ENCFF807MUK 1321907393 ENCODE Processing Pipeline d853eb73b406f83c6fa5344221713674 https://www.encodeproject.org/files/ENCFF833RZP/@@download/ENCFF833RZP.bam hg19 released low read depth, antibody characterized with exemption ENCFF774GVR bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 426203884 ENCODE Processing Pipeline b8266142eb321425b633b700ad936e94 https://www.encodeproject.org/files/ENCFF774GVR/@@download/ENCFF774GVR.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF400EII bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 487586021 ENCODE Processing Pipeline 529029f8214f40d1a2e10936d16998d8 https://www.encodeproject.org/files/ENCFF400EII/@@download/ENCFF400EII.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF237AGN bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 4910075 ENCODE Processing Pipeline b3f02fb185d6d7e6363c10a7e18e6500 https://www.encodeproject.org/files/ENCFF237AGN/@@download/ENCFF237AGN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF575WAL bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF457VAD, ENCFF632RLI, ENCFF901MQU, ENCFF925QJE 6156163 ENCODE Processing Pipeline c08ce6ad168200e953b114da0d8413a2 https://www.encodeproject.org/files/ENCFF575WAL/@@download/ENCFF575WAL.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF421LEH bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF412SBF 10934316 ENCODE Processing Pipeline 5b843b5b0999eb9b42b9f43040efc106 https://www.encodeproject.org/files/ENCFF421LEH/@@download/ENCFF421LEH.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF164KYP bed narrowPeak conservative idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF001TDO, ENCFF237AGN, ENCFF412SBF, ENCFF575WAL 252142 ENCODE Processing Pipeline a02c0f3be24d8f5d83c53676194e1057 https://www.encodeproject.org/files/ENCFF164KYP/@@download/ENCFF164KYP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF872FIL bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF237AGN 10892694 ENCODE Processing Pipeline 91383ac2c013990465b9b9a9b55b7273 https://www.encodeproject.org/files/ENCFF872FIL/@@download/ENCFF872FIL.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF147MAN bed narrowPeak optimal idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF001TDO, ENCFF237AGN, ENCFF412SBF, ENCFF575WAL 334161 ENCODE Processing Pipeline 10b950f75ae36b7a32659dcdfc3bd99b https://www.encodeproject.org/files/ENCFF147MAN/@@download/ENCFF147MAN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF412SBF bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF632RLI, ENCFF901MQU 5160755 ENCODE Processing Pipeline f6d3c63dcd53e3fa5b2668f469cd49f1 https://www.encodeproject.org/files/ENCFF412SBF/@@download/ENCFF412SBF.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF682LXT bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF575WAL 13580884 ENCODE Processing Pipeline a9179fb620620906ffc598e3f71fb9fd https://www.encodeproject.org/files/ENCFF682LXT/@@download/ENCFF682LXT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF620KGN bigBed narrowPeak conservative idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF164KYP 509923 ENCODE Processing Pipeline 65d6e0b6d6fcfba5c9fdda095c8fc358 https://www.encodeproject.org/files/ENCFF620KGN/@@download/ENCFF620KGN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF565BTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF147MAN 624388 ENCODE Processing Pipeline 77a2b407805ba9e8861c93c972e293b5 https://www.encodeproject.org/files/ENCFF565BTQ/@@download/ENCFF565BTQ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF153EWU fastq reads ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 1 50 single-ended 1291127519 Richard Myers, HAIB b10bacd3eb94615bf9f342791f9cb364 SRA:SRR5338746 https://www.encodeproject.org/files/ENCFF153EWU/@@download/ENCFF153EWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF820XYY/ released low read depth, antibody characterized with exemption ENCFF204ZXN fastq reads ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 1 50 single-ended 1244503897 Richard Myers, HAIB e3e8f50ca2dc999a2fd633a4696288ce SRA:SRR5338745 https://www.encodeproject.org/files/ENCFF204ZXN/@@download/ENCFF204ZXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGD/ released low read depth, antibody characterized with exemption ENCFF457VAD bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 50 ENCFF153EWU, ENCFF807MUK 1059431046 ENCODE Processing Pipeline d228787f818823eabc76a8bf2cd9f2a4 https://www.encodeproject.org/files/ENCFF457VAD/@@download/ENCFF457VAD.bam hg19 released low read depth, antibody characterized with exemption ENCFF901MQU bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 50 ENCFF204ZXN, ENCFF807MUK 973262674 ENCODE Processing Pipeline fd1fcbcdad6c90d52bbd82e93231a4b6 https://www.encodeproject.org/files/ENCFF901MQU/@@download/ENCFF901MQU.bam hg19 released low read depth, antibody characterized with exemption ENCFF838PDS bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF457VAD, ENCFF632RLI, ENCFF901MQU, ENCFF925QJE 743943269 ENCODE Processing Pipeline a218c2c944880b7eed61819d31e466e9 https://www.encodeproject.org/files/ENCFF838PDS/@@download/ENCFF838PDS.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF803QZF bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF457VAD, ENCFF632RLI, ENCFF901MQU, ENCFF925QJE 854910328 ENCODE Processing Pipeline 20c118a8e1dc06f9adbefec5529d452b https://www.encodeproject.org/files/ENCFF803QZF/@@download/ENCFF803QZF.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF472KYA bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 487952852 ENCODE Processing Pipeline 4e7ea39e0218e2650ce7e6667568c4f0 https://www.encodeproject.org/files/ENCFF472KYA/@@download/ENCFF472KYA.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF519DTT bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF632RLI, ENCFF901MQU 436095038 ENCODE Processing Pipeline 9e07fea625dd0cc94d62256e4306ffaf https://www.encodeproject.org/files/ENCFF519DTT/@@download/ENCFF519DTT.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF554QBP bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF632RLI, ENCFF901MQU 364676648 ENCODE Processing Pipeline 6fa58ecd7a17e11febe54ab6594265fc https://www.encodeproject.org/files/ENCFF554QBP/@@download/ENCFF554QBP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF137OKC bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF419TYN, ENCFF901MQU 5351871 ENCODE Processing Pipeline d1abd021e471634b526d8eec0cf160df https://www.encodeproject.org/files/ENCFF137OKC/@@download/ENCFF137OKC.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF457RQE bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF419TYN, ENCFF457VAD, ENCFF901MQU, ENCFF925QJE 6358690 ENCODE Processing Pipeline b734252be3fbc3723a655be96a5d105f https://www.encodeproject.org/files/ENCFF457RQE/@@download/ENCFF457RQE.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF245CJT bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF048TGI 11019483 ENCODE Processing Pipeline 06613bc3c5ae77dddf229b9607a0b12d https://www.encodeproject.org/files/ENCFF245CJT/@@download/ENCFF245CJT.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF048TGI bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 5117975 ENCODE Processing Pipeline bdacf9514d2b0baf47632a772a4cbbfa https://www.encodeproject.org/files/ENCFF048TGI/@@download/ENCFF048TGI.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF340HJN bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF137OKC 11051773 ENCODE Processing Pipeline 1fb3bab16859c8bace87b9e000d00286 https://www.encodeproject.org/files/ENCFF340HJN/@@download/ENCFF340HJN.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF213CEZ bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 435763502 ENCODE Processing Pipeline c333a59820e81557eec02063fa7b57a6 https://www.encodeproject.org/files/ENCFF213CEZ/@@download/ENCFF213CEZ.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF673ARM bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF457RQE 13601722 ENCODE Processing Pipeline 59c9a0c6e7be6e65d24d2e173885c91d https://www.encodeproject.org/files/ENCFF673ARM/@@download/ENCFF673ARM.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF760LLP bam unfiltered alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 50 ENCFF204ZXN, ENCFF643CGH 1325838187 ENCODE Processing Pipeline e5d4c3f58207e64f719bfb6ee5aa03cf https://www.encodeproject.org/files/ENCFF760LLP/@@download/ENCFF760LLP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF861DPR bam unfiltered alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 50 ENCFF153EWU, ENCFF643CGH 1384439907 ENCODE Processing Pipeline c96b4ed2685bbe592d5cdbdc64ee188c https://www.encodeproject.org/files/ENCFF861DPR/@@download/ENCFF861DPR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF523HQR bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 50 ENCFF204ZXN, ENCFF643CGH 973036120 ENCODE Processing Pipeline aa5f9318401f9d3bf50050f023288463 https://www.encodeproject.org/files/ENCFF523HQR/@@download/ENCFF523HQR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF604ODF bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 50 ENCFF153EWU, ENCFF643CGH 1059410205 ENCODE Processing Pipeline b1f51fd4f28b3c826293da86ed014e69 https://www.encodeproject.org/files/ENCFF604ODF/@@download/ENCFF604ODF.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF476IUK bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF604ODF, ENCFF715ECN 445135619 ENCODE Processing Pipeline 8162e00455d35e229797193980030755 https://www.encodeproject.org/files/ENCFF476IUK/@@download/ENCFF476IUK.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF418COA bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF113QYJ, ENCFF523HQR 382422093 ENCODE Processing Pipeline 3c6787b39c9ab1434af1d213828dbca3 https://www.encodeproject.org/files/ENCFF418COA/@@download/ENCFF418COA.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF141LNU bigWig signal p-value ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF113QYJ, ENCFF523HQR, ENCFF604ODF, ENCFF715ECN 918386121 ENCODE Processing Pipeline 9bf053962bee4d5b1bf71e39ab87dc4b https://www.encodeproject.org/files/ENCFF141LNU/@@download/ENCFF141LNU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF412RLI bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF113QYJ, ENCFF523HQR 366425215 ENCODE Processing Pipeline f6663228ca45047e6792bc6e508d108d https://www.encodeproject.org/files/ENCFF412RLI/@@download/ENCFF412RLI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF378BPO bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF604ODF, ENCFF715ECN 427082037 ENCODE Processing Pipeline d199abaf973d9864c9215807cf5aa774 https://www.encodeproject.org/files/ENCFF378BPO/@@download/ENCFF378BPO.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF614GXY bigWig fold change over control ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF113QYJ, ENCFF523HQR, ENCFF604ODF, ENCFF715ECN 853082997 ENCODE Processing Pipeline 38ed6a4e220cef27a3314f61dbe8be7f https://www.encodeproject.org/files/ENCFF614GXY/@@download/ENCFF614GXY.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF312UYU bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF497SGD 13586715 ENCODE Processing Pipeline 25510f2076479b1784b38cd96fbca256 https://www.encodeproject.org/files/ENCFF312UYU/@@download/ENCFF312UYU.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF553LKY bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF113QYJ, ENCFF523HQR 5095584 ENCODE Processing Pipeline a934605f716f0208c86fa3b17651d8ef https://www.encodeproject.org/files/ENCFF553LKY/@@download/ENCFF553LKY.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF527LAX bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF553LKY 10859196 ENCODE Processing Pipeline 33b3b9db81efd4ed1e4f0cb854412739 https://www.encodeproject.org/files/ENCFF527LAX/@@download/ENCFF527LAX.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF497SGD bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF113QYJ, ENCFF523HQR, ENCFF604ODF, ENCFF715ECN 6153676 ENCODE Processing Pipeline 169a34dfeaf37add1b99135135fbbf31 https://www.encodeproject.org/files/ENCFF497SGD/@@download/ENCFF497SGD.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF795UHX bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF604ODF, ENCFF715ECN 4911427 ENCODE Processing Pipeline 13231d9aae8f371d947a084cedea543e https://www.encodeproject.org/files/ENCFF795UHX/@@download/ENCFF795UHX.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF852MHW bed narrowPeak conservative idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF497SGD, ENCFF553LKY, ENCFF795UHX 253178 ENCODE Processing Pipeline 22ab6d7729d433c7a4f050fb64732969 https://www.encodeproject.org/files/ENCFF852MHW/@@download/ENCFF852MHW.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF055GBS bigBed narrowPeak conservative idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF852MHW 512140 ENCODE Processing Pipeline 7938e7ddbdc59f1dea6e8d8bb5f3800d https://www.encodeproject.org/files/ENCFF055GBS/@@download/ENCFF055GBS.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF753JZI bigBed narrowPeak optimal idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF928MIN 616736 ENCODE Processing Pipeline 998b452231daec7b7cc3f78be470035b https://www.encodeproject.org/files/ENCFF753JZI/@@download/ENCFF753JZI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF227WVB bigBed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF795UHX 10902138 ENCODE Processing Pipeline 09ea231d9e769c54a919a20e9c473b1a https://www.encodeproject.org/files/ENCFF227WVB/@@download/ENCFF227WVB.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF928MIN bed narrowPeak optimal idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF497SGD, ENCFF553LKY, ENCFF795UHX 327415 ENCODE Processing Pipeline 76b7072d3b602e80d79cc494981d5780 https://www.encodeproject.org/files/ENCFF928MIN/@@download/ENCFF928MIN.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF255JSE bed narrowPeak conservative idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF001TDO, ENCFF048TGI, ENCFF137OKC, ENCFF457RQE 228651 ENCODE Processing Pipeline a24b09d259b62354ac8cfc1921d74e60 https://www.encodeproject.org/files/ENCFF255JSE/@@download/ENCFF255JSE.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF428XZH bed narrowPeak optimal idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF001TDO, ENCFF048TGI, ENCFF137OKC, ENCFF457RQE 294047 ENCODE Processing Pipeline e491a3131d2ab3ff3d4fb2e3cb009822 https://www.encodeproject.org/files/ENCFF428XZH/@@download/ENCFF428XZH.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF629HJV bigBed narrowPeak optimal idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF428XZH 562806 ENCODE Processing Pipeline 18821f6ab15ca85803ff68458c4e04fe https://www.encodeproject.org/files/ENCFF629HJV/@@download/ENCFF629HJV.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF124NLL bigBed narrowPeak conservative idr thresholded peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1, 2 ENCFF255JSE 474963 ENCODE Processing Pipeline 6d2ec16938b37d2cd19df6ea0f38aac1 https://www.encodeproject.org/files/ENCFF124NLL/@@download/ENCFF124NLL.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF000NCB bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NCL 1635936126 Richard Myers, HAIB b461995731afcf9affaee8caf9dd68cf https://www.encodeproject.org/files/ENCFF000NCB/@@download/ENCFF000NCB.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000NCC bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NCO 1670148692 Richard Myers, HAIB c77ec9cc829095faccd369965bf57d71 https://www.encodeproject.org/files/ENCFF000NCC/@@download/ENCFF000NCC.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000NCE bigWig raw signal ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 14680203 Richard Myers, HAIB 2229cf8dc767fa2906bcfce122e13467 https://www.encodeproject.org/files/ENCFF000NCE/@@download/ENCFF000NCE.bigWig hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NCG bigWig raw signal ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 12741746 Richard Myers, HAIB eb7b88cf1183e9fa75d6bb6b06671e5d https://www.encodeproject.org/files/ENCFF000NCG/@@download/ENCFF000NCG.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NCL fastq reads ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1098196387 Richard Myers, HAIB b93ecb8f9a1fee4ef26d340eea341cef https://www.encodeproject.org/files/ENCFF000NCL/@@download/ENCFF000NCL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NFR/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000NCO fastq reads ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1128076619 Richard Myers, HAIB 0ee9ff81004bd06bf2f21b09c1fc017c https://www.encodeproject.org/files/ENCFF000NCO/@@download/ENCFF000NCO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NFR/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF440RZX bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCL, ENCFF643CGH 769502642 ENCODE Processing Pipeline a975a3e7b65a625b18fe5e83dc0ae753 https://www.encodeproject.org/files/ENCFF440RZX/@@download/ENCFF440RZX.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF959VOV bam unfiltered alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCL, ENCFF643CGH 1401063990 ENCODE Processing Pipeline a031f413a53c9a09c9054c933e5213fd https://www.encodeproject.org/files/ENCFF959VOV/@@download/ENCFF959VOV.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF058PCJ bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCO, ENCFF643CGH 777820312 ENCODE Processing Pipeline 4a190df25ed187b2792077edc686a035 https://www.encodeproject.org/files/ENCFF058PCJ/@@download/ENCFF058PCJ.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF623XBY bam unfiltered alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCO, ENCFF643CGH 1434587082 ENCODE Processing Pipeline db53408c0843e681abc6a0d702046aa1 https://www.encodeproject.org/files/ENCFF623XBY/@@download/ENCFF623XBY.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF175QYS bam unfiltered alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCL, ENCFF807MUK 1394420384 ENCODE Processing Pipeline a5a10dfe459304d532c0298b1066442c https://www.encodeproject.org/files/ENCFF175QYS/@@download/ENCFF175QYS.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF492RDK bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCL, ENCFF807MUK 769555881 ENCODE Processing Pipeline d2ee4744b90bd41a0961e2c801a2acd0 https://www.encodeproject.org/files/ENCFF492RDK/@@download/ENCFF492RDK.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF200JDZ bam unfiltered alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCO, ENCFF807MUK 1427737400 ENCODE Processing Pipeline 952b5ac64218abd722fb08b86d0f9de0 https://www.encodeproject.org/files/ENCFF200JDZ/@@download/ENCFF200JDZ.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF675VLP bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCO, ENCFF807MUK 777949300 ENCODE Processing Pipeline c830f1c2cc4d36eba8097303c81db27b https://www.encodeproject.org/files/ENCFF675VLP/@@download/ENCFF675VLP.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF419GKM bigWig signal p-value ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF353UFN 316085157 ENCODE Processing Pipeline 88e72f8c7cdf7ad5cbaffbb3e7108545 https://www.encodeproject.org/files/ENCFF419GKM/@@download/ENCFF419GKM.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF314OJX bigWig signal p-value ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF353UFN, ENCFF440RZX 325932808 ENCODE Processing Pipeline 265dda3140084ee570e1d8a9665e2969 https://www.encodeproject.org/files/ENCFF314OJX/@@download/ENCFF314OJX.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF696TZN bigBed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF704SNT 8008168 ENCODE Processing Pipeline c51bf2b3eb9245699713b30627c542d4 https://www.encodeproject.org/files/ENCFF696TZN/@@download/ENCFF696TZN.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF130NTT bigWig signal p-value ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF353UFN, ENCFF440RZX 320385292 ENCODE Processing Pipeline fedc84e924bd5867afa711030c7d7c9e https://www.encodeproject.org/files/ENCFF130NTT/@@download/ENCFF130NTT.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF515QJN bigWig fold change over control ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF353UFN 266999963 ENCODE Processing Pipeline c6770a9217db8da2f273277f6632abbd https://www.encodeproject.org/files/ENCFF515QJN/@@download/ENCFF515QJN.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF064BXP bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF353UFN 3622543 ENCODE Processing Pipeline 5c6485486c0e4e576c32b2afcaa1dc29 https://www.encodeproject.org/files/ENCFF064BXP/@@download/ENCFF064BXP.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF706YAV bigBed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF261BEX 10754830 ENCODE Processing Pipeline fc11132b95790319eba9655f06b3696e https://www.encodeproject.org/files/ENCFF706YAV/@@download/ENCFF706YAV.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF976REA bigWig fold change over control ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF353UFN, ENCFF440RZX 269223846 ENCODE Processing Pipeline 664b0cab3afb3ce38a4246cb2ab82497 https://www.encodeproject.org/files/ENCFF976REA/@@download/ENCFF976REA.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF704SNT bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF353UFN, ENCFF440RZX 3647125 ENCODE Processing Pipeline e90d1d90b5586cba7596ca81995c0690 https://www.encodeproject.org/files/ENCFF704SNT/@@download/ENCFF704SNT.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF132AXT bigWig fold change over control ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF353UFN, ENCFF440RZX 485433877 ENCODE Processing Pipeline 233c6699603c5a9d4ea42e9d2faa04b7 https://www.encodeproject.org/files/ENCFF132AXT/@@download/ENCFF132AXT.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF261BEX bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF353UFN, ENCFF440RZX 4214589 ENCODE Processing Pipeline 25199a5533d105e96fb90ca23f4582e2 https://www.encodeproject.org/files/ENCFF261BEX/@@download/ENCFF261BEX.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF828FPY bed narrowPeak conservative idr thresholded peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF064BXP, ENCFF261BEX, ENCFF419RSJ, ENCFF704SNT 11912 ENCODE Processing Pipeline ed514925fb5cbbbf0e865e59167b3f21 https://www.encodeproject.org/files/ENCFF828FPY/@@download/ENCFF828FPY.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF963CGV bed narrowPeak optimal idr thresholded peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF064BXP, ENCFF261BEX, ENCFF419RSJ, ENCFF704SNT 12184 ENCODE Processing Pipeline 311ab28102f33c2a85a469d7dde42bd8 https://www.encodeproject.org/files/ENCFF963CGV/@@download/ENCFF963CGV.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF562LQQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF963CGV 79705 ENCODE Processing Pipeline e06e7fecfd172323e4207eae0ea39502 https://www.encodeproject.org/files/ENCFF562LQQ/@@download/ENCFF562LQQ.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF817TSZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF828FPY 89723 ENCODE Processing Pipeline 93249f1fe465f572d1966ff00c6e897e https://www.encodeproject.org/files/ENCFF817TSZ/@@download/ENCFF817TSZ.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF072IIE bigBed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF064BXP 8051877 ENCODE Processing Pipeline 865ebe2f411db36d51590378b72081a5 https://www.encodeproject.org/files/ENCFF072IIE/@@download/ENCFF072IIE.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF412PAR bigWig signal p-value ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492RDK, ENCFF675VLP, ENCFF692IRB 326155992 ENCODE Processing Pipeline 7af548f5884957da04431683f3f19e30 https://www.encodeproject.org/files/ENCFF412PAR/@@download/ENCFF412PAR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF561CDO bigWig signal p-value ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF692IRB 320606373 ENCODE Processing Pipeline 6664540f2e424b3a29a37222e83af88b https://www.encodeproject.org/files/ENCFF561CDO/@@download/ENCFF561CDO.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF274VJK bigWig signal p-value ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF692IRB 319305634 ENCODE Processing Pipeline a7e4c3b7d61cebe68fc4dd46869beeca https://www.encodeproject.org/files/ENCFF274VJK/@@download/ENCFF274VJK.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF693HXR bigWig fold change over control ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF692IRB 269340652 ENCODE Processing Pipeline 96731a8d0a7a210f9aec9ade2a6c1112 https://www.encodeproject.org/files/ENCFF693HXR/@@download/ENCFF693HXR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF002QBQ bigWig fold change over control ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492RDK, ENCFF675VLP, ENCFF692IRB 482741548 ENCODE Processing Pipeline 96554f9ecb047de844c6587d267db4fd https://www.encodeproject.org/files/ENCFF002QBQ/@@download/ENCFF002QBQ.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF734DHL bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF692IRB 3655091 ENCODE Processing Pipeline 7cb48ecf5f77bc949c309982601750e9 https://www.encodeproject.org/files/ENCFF734DHL/@@download/ENCFF734DHL.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF708ETS bigBed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF978KSK 10828658 ENCODE Processing Pipeline 89f9d4b0079eec6896aac3a6ac92c6e9 https://www.encodeproject.org/files/ENCFF708ETS/@@download/ENCFF708ETS.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF312ORN bigWig fold change over control ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF692IRB 266116682 ENCODE Processing Pipeline 99ffdd08dac87c0980043081b99b901d https://www.encodeproject.org/files/ENCFF312ORN/@@download/ENCFF312ORN.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF326RDQ bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF692IRB 3778655 ENCODE Processing Pipeline 195e3c59951c338fd2cc7df7b6dd36d6 https://www.encodeproject.org/files/ENCFF326RDQ/@@download/ENCFF326RDQ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF978KSK bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492RDK, ENCFF675VLP, ENCFF692IRB 4249065 ENCODE Processing Pipeline e6ba63586057fc0aca1971837734e758 https://www.encodeproject.org/files/ENCFF978KSK/@@download/ENCFF978KSK.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF327RMU bigBed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF326RDQ 10061963 ENCODE Processing Pipeline c99d9f6b8c978a42359c624761ab9776 https://www.encodeproject.org/files/ENCFF327RMU/@@download/ENCFF327RMU.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF653VNH bigBed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF734DHL 8072101 ENCODE Processing Pipeline f91bab520dcadbcd3e14ac3591f6a5fc https://www.encodeproject.org/files/ENCFF653VNH/@@download/ENCFF653VNH.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF150STV bed narrowPeak optimal idr thresholded peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF326RDQ, ENCFF734DHL, ENCFF978KSK 11618 ENCODE Processing Pipeline 2505f610e615fcc77e60f7bbc8ef9d14 https://www.encodeproject.org/files/ENCFF150STV/@@download/ENCFF150STV.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF295FWZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF150STV 81273 ENCODE Processing Pipeline 5715e84a9f222ddc6e2d43b5d7017dd7 https://www.encodeproject.org/files/ENCFF295FWZ/@@download/ENCFF295FWZ.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF876VGD bam unfiltered alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF009IPS, ENCFF738HHZ, ENCFF807MUK 3515399957 ENCODE Processing Pipeline 09425ee4d23d9d9cf90b86116c67f573 https://www.encodeproject.org/files/ENCFF876VGD/@@download/ENCFF876VGD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF662EOT bam unfiltered alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF042FDU, ENCFF343AWT, ENCFF807MUK 5083154755 ENCODE Processing Pipeline 5793a424b92d90f2c66b28997a2ec388 https://www.encodeproject.org/files/ENCFF662EOT/@@download/ENCFF662EOT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF343AWT fastq reads ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF042FDU 2414375093 Michael Snyder, Stanford e0542ccac68c14528a6363e9af108f6a https://www.encodeproject.org/files/ENCFF343AWT/@@download/ENCFF343AWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF042FDU fastq reads ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF343AWT 2338639773 Michael Snyder, Stanford 1ee948eb83360f92520554dfccaada78 https://www.encodeproject.org/files/ENCFF042FDU/@@download/ENCFF042FDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF738HHZ fastq reads ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF009IPS 1664192460 Michael Snyder, Stanford 7eabef1ba841e3c5133de545ba33a2f9 https://www.encodeproject.org/files/ENCFF738HHZ/@@download/ENCFF738HHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF009IPS fastq reads ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF738HHZ 1696735414 Michael Snyder, Stanford fd2f65f503a23fd7b8c67ad4b7acd242 https://www.encodeproject.org/files/ENCFF009IPS/@@download/ENCFF009IPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF624TXF bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF009IPS, ENCFF738HHZ, ENCFF807MUK 2375151573 ENCODE Processing Pipeline be81f9e34dcb404729945d20fd42890b https://www.encodeproject.org/files/ENCFF624TXF/@@download/ENCFF624TXF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF492UHU bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF042FDU, ENCFF343AWT, ENCFF807MUK 3578555319 ENCODE Processing Pipeline f450f312b6c40c3e0791d52726abceba https://www.encodeproject.org/files/ENCFF492UHU/@@download/ENCFF492UHU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF383NGA bigWig signal p-value ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF624TXF 921455570 ENCODE Processing Pipeline 65dd9f2c5db5df3437d8c77acf75cfdc https://www.encodeproject.org/files/ENCFF383NGA/@@download/ENCFF383NGA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF841SVI bigWig signal p-value ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF492UHU 958767404 ENCODE Processing Pipeline 7ec0d537935484a1b12c618f5dcfe728 https://www.encodeproject.org/files/ENCFF841SVI/@@download/ENCFF841SVI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF225ESE bigWig signal p-value ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF492UHU, ENCFF581ZJL, ENCFF624TXF 1802848590 ENCODE Processing Pipeline f3e7dbde6dc0629b5d4462f009e265da https://www.encodeproject.org/files/ENCFF225ESE/@@download/ENCFF225ESE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF670FBR bigWig fold change over control ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF624TXF 879683606 ENCODE Processing Pipeline 91aa347a7ebab6ca5919a59ffeb7ad14 https://www.encodeproject.org/files/ENCFF670FBR/@@download/ENCFF670FBR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF936PRA bigWig fold change over control ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF492UHU 1013614242 ENCODE Processing Pipeline 06d582410025fbc017c917829325e31d https://www.encodeproject.org/files/ENCFF936PRA/@@download/ENCFF936PRA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF646IRR bigWig fold change over control ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF492UHU, ENCFF581ZJL, ENCFF624TXF 1801991348 ENCODE Processing Pipeline c54dabbb757499eed05e5a72c2527631 https://www.encodeproject.org/files/ENCFF646IRR/@@download/ENCFF646IRR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF171LJW bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF624TXF 5897849 ENCODE Processing Pipeline e77ca1dd2ba5e555688871ed01753bc8 https://www.encodeproject.org/files/ENCFF171LJW/@@download/ENCFF171LJW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF602HNM bigBed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF171LJW 11164889 ENCODE Processing Pipeline b32803c4c45fdc3118e4b816ffd55a6e https://www.encodeproject.org/files/ENCFF602HNM/@@download/ENCFF602HNM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF109EWV bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF492UHU, ENCFF581ZJL, ENCFF624TXF 7041721 ENCODE Processing Pipeline 75ce8e52c3e1dcb728473af3e4b217db https://www.encodeproject.org/files/ENCFF109EWV/@@download/ENCFF109EWV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF970QSE bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF492UHU 6315831 ENCODE Processing Pipeline 452e82234e245d6bffd74b9e4d727469 https://www.encodeproject.org/files/ENCFF970QSE/@@download/ENCFF970QSE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF714LCM bigBed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF970QSE 11121789 ENCODE Processing Pipeline 9198f7d9445afb12ec5064f2be4d6e8d https://www.encodeproject.org/files/ENCFF714LCM/@@download/ENCFF714LCM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF830OUC bigBed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF109EWV 11034963 ENCODE Processing Pipeline 24a9311e4c4b8a8a3e87dd3f9c4e79c6 https://www.encodeproject.org/files/ENCFF830OUC/@@download/ENCFF830OUC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF228HJT bam unfiltered alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF009IPS, ENCFF643CGH, ENCFF738HHZ 3515505659 ENCODE Processing Pipeline 34aec77391697c82f7fe1c21cf218752 https://www.encodeproject.org/files/ENCFF228HJT/@@download/ENCFF228HJT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF425PAF bam unfiltered alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF042FDU, ENCFF343AWT, ENCFF643CGH 5085281933 ENCODE Processing Pipeline a75feb37cc134cf89a66c2300253190b https://www.encodeproject.org/files/ENCFF425PAF/@@download/ENCFF425PAF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF354JLP bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF009IPS, ENCFF643CGH, ENCFF738HHZ 2376034844 ENCODE Processing Pipeline e506604a1c3527ecd1443a930080ccbb https://www.encodeproject.org/files/ENCFF354JLP/@@download/ENCFF354JLP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF146PDA bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF042FDU, ENCFF343AWT, ENCFF643CGH 3580329231 ENCODE Processing Pipeline 4b8b8f8304373998484236577e4382c5 https://www.encodeproject.org/files/ENCFF146PDA/@@download/ENCFF146PDA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF789LBP bigWig signal p-value ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF354JLP, ENCFF910IKB 1015153487 ENCODE Processing Pipeline 5e273c5033fdf890f57ad5a9b6478783 https://www.encodeproject.org/files/ENCFF789LBP/@@download/ENCFF789LBP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF216FLX bigWig signal p-value ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF146PDA, ENCFF227IZS 1082268936 ENCODE Processing Pipeline 2d5f71c04a0bbcaff805574985082769 https://www.encodeproject.org/files/ENCFF216FLX/@@download/ENCFF216FLX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF417KRO bigWig signal p-value ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF146PDA, ENCFF227IZS, ENCFF354JLP, ENCFF910IKB 1820170846 ENCODE Processing Pipeline 6e902c898962866c9a08d3f545777051 https://www.encodeproject.org/files/ENCFF417KRO/@@download/ENCFF417KRO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF800KTB bigWig fold change over control ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF354JLP, ENCFF910IKB 872219620 ENCODE Processing Pipeline 76bbceca948d5a8eced0a14f0d1329ae https://www.encodeproject.org/files/ENCFF800KTB/@@download/ENCFF800KTB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF593PLG bigWig fold change over control ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF146PDA, ENCFF227IZS 1010407464 ENCODE Processing Pipeline 74619e90c43a780aade5d4e8d6999a09 https://www.encodeproject.org/files/ENCFF593PLG/@@download/ENCFF593PLG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF048RJY bigWig fold change over control ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF146PDA, ENCFF227IZS, ENCFF354JLP, ENCFF910IKB 1835370327 ENCODE Processing Pipeline 49d4c9dbe9a0e12f58810e633b25a1f7 https://www.encodeproject.org/files/ENCFF048RJY/@@download/ENCFF048RJY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF856IJA bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF354JLP, ENCFF910IKB 5750631 ENCODE Processing Pipeline e5759f5333a07112f8eec0ff9675d30e https://www.encodeproject.org/files/ENCFF856IJA/@@download/ENCFF856IJA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF985RNN bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF146PDA, ENCFF227IZS 6132872 ENCODE Processing Pipeline e730bb1b04eac15f24232021e30eb6ee https://www.encodeproject.org/files/ENCFF985RNN/@@download/ENCFF985RNN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF591ANX bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF146PDA, ENCFF227IZS, ENCFF354JLP, ENCFF910IKB 6963143 ENCODE Processing Pipeline 083e331899d1fe34c2806ae5161eac97 https://www.encodeproject.org/files/ENCFF591ANX/@@download/ENCFF591ANX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF521ZPM bigBed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF856IJA 11156687 ENCODE Processing Pipeline 076dd8c5ca22014566433e8046495697 https://www.encodeproject.org/files/ENCFF521ZPM/@@download/ENCFF521ZPM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF361DHD bigBed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF985RNN 11118093 ENCODE Processing Pipeline 07d2486856bf319c1a374326d02a5d1c https://www.encodeproject.org/files/ENCFF361DHD/@@download/ENCFF361DHD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF308TVT bigBed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF591ANX 11041617 ENCODE Processing Pipeline ba91b46aa080b44fa26028e0cbe25d71 https://www.encodeproject.org/files/ENCFF308TVT/@@download/ENCFF308TVT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF243YBW bed narrowPeak conservative idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF591ANX, ENCFF856IJA, ENCFF985RNN 17808 ENCODE Processing Pipeline b527cd37ceeb15f7525b2dc6c404c146 https://www.encodeproject.org/files/ENCFF243YBW/@@download/ENCFF243YBW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF384ACC bigBed narrowPeak conservative idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF243YBW 96712 ENCODE Processing Pipeline 7f99d2c2631f8d39389a1a044bd787c2 https://www.encodeproject.org/files/ENCFF384ACC/@@download/ENCFF384ACC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF589OOF bed narrowPeak optimal idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF591ANX, ENCFF856IJA, ENCFF985RNN 30516 ENCODE Processing Pipeline fcc3ca42fca4cf49e5c33d2d91d198de https://www.encodeproject.org/files/ENCFF589OOF/@@download/ENCFF589OOF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF172GOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF589OOF 120971 ENCODE Processing Pipeline e855df2f07d76b0efb3f1525493b926b https://www.encodeproject.org/files/ENCFF172GOQ/@@download/ENCFF172GOQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF518UWK bigBed narrowPeak optimal idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF967IKR 97857 ENCODE Processing Pipeline 8a05a0a9bd5ad213ce56f6b431c37709 https://www.encodeproject.org/files/ENCFF518UWK/@@download/ENCFF518UWK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF590BAZ bigBed narrowPeak conservative idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF939JEH 65808 ENCODE Processing Pipeline 51f12f3c6d39e5fe257da2f6c5661248 https://www.encodeproject.org/files/ENCFF590BAZ/@@download/ENCFF590BAZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF967IKR bed narrowPeak optimal idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF109EWV, ENCFF171LJW, ENCFF970QSE 26738 ENCODE Processing Pipeline 599e70697c9787a7d8c4551e5e62263b https://www.encodeproject.org/files/ENCFF967IKR/@@download/ENCFF967IKR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF939JEH bed narrowPeak conservative idr thresholded peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF109EWV, ENCFF171LJW, ENCFF970QSE 14034 ENCODE Processing Pipeline 8dbed902c62f09b3944f623a537e0e11 https://www.encodeproject.org/files/ENCFF939JEH/@@download/ENCFF939JEH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF288JVH bam unfiltered alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF165JGK, ENCFF492UOJ, ENCFF807MUK 5480248242 ENCODE Processing Pipeline 5feba57adb9a1f6c9a224dc7f09eddc9 https://www.encodeproject.org/files/ENCFF288JVH/@@download/ENCFF288JVH.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF749OJN bam unfiltered alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 100 ENCFF113QZV, ENCFF807MUK, ENCFF891LJI 3562864984 ENCODE Processing Pipeline 639a5bc9469966dffe18ec0c9049eb07 https://www.encodeproject.org/files/ENCFF749OJN/@@download/ENCFF749OJN.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF492UOJ fastq reads ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF165JGK 2446172386 Michael Snyder, Stanford 28cdec63a3bc37a177dfafa2c4597707 https://www.encodeproject.org/files/ENCFF492UOJ/@@download/ENCFF492UOJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF113QZV fastq reads ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 1 ENCFF891LJI 1594726281 Michael Snyder, Stanford c2ae1736a1a651e5215ca5f7fe7ca762 https://www.encodeproject.org/files/ENCFF113QZV/@@download/ENCFF113QZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF891LJI fastq reads ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 2 ENCFF113QZV 1641099412 Michael Snyder, Stanford 51f28c16e941b5511f0eab4bd32e46bf https://www.encodeproject.org/files/ENCFF891LJI/@@download/ENCFF891LJI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF165JGK fastq reads ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF492UOJ 2508952259 Michael Snyder, Stanford 8e45fbb838054d7b5f56d500338e2180 https://www.encodeproject.org/files/ENCFF165JGK/@@download/ENCFF165JGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF965IIX bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 100 ENCFF113QZV, ENCFF807MUK, ENCFF891LJI 2987738184 ENCODE Processing Pipeline 4b26c9a74ec8808cd5c4818486c2cc47 https://www.encodeproject.org/files/ENCFF965IIX/@@download/ENCFF965IIX.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF021QKM bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF165JGK, ENCFF492UOJ, ENCFF807MUK 4559827782 ENCODE Processing Pipeline 83a1fa4884eb6bafd23d400c815d1cd8 https://www.encodeproject.org/files/ENCFF021QKM/@@download/ENCFF021QKM.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF739OTD bigWig signal p-value ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF021QKM, ENCFF051LWI 1161441211 ENCODE Processing Pipeline 78280ba76be1ab007d93e96f9378852f https://www.encodeproject.org/files/ENCFF739OTD/@@download/ENCFF739OTD.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF815AQW bigWig signal p-value ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF581ZJL, ENCFF965IIX 1015874087 ENCODE Processing Pipeline 5d83dc137daeb5da1b312706a1cad03d https://www.encodeproject.org/files/ENCFF815AQW/@@download/ENCFF815AQW.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF205DHT bigWig signal p-value ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF021QKM, ENCFF051LWI, ENCFF581ZJL, ENCFF965IIX 1793994525 ENCODE Processing Pipeline 3c014a0b15890ad3b50183957dfe855c https://www.encodeproject.org/files/ENCFF205DHT/@@download/ENCFF205DHT.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF111BZA bigWig fold change over control ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF021QKM, ENCFF051LWI 1192207947 ENCODE Processing Pipeline 99446f66343c4041168ddb81c580ba51 https://www.encodeproject.org/files/ENCFF111BZA/@@download/ENCFF111BZA.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF620QKB bigWig fold change over control ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF581ZJL, ENCFF965IIX 979684859 ENCODE Processing Pipeline efe6570138ed72741ee8416c1908a688 https://www.encodeproject.org/files/ENCFF620QKB/@@download/ENCFF620QKB.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF087NBH bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF581ZJL, ENCFF965IIX 6391853 ENCODE Processing Pipeline 68000bd1d857d5300240120488bc52e1 https://www.encodeproject.org/files/ENCFF087NBH/@@download/ENCFF087NBH.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF957LKR bigWig fold change over control ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF021QKM, ENCFF051LWI, ENCFF581ZJL, ENCFF965IIX 1979847779 ENCODE Processing Pipeline 6e51960f0f2727417ce67c8549c139e4 https://www.encodeproject.org/files/ENCFF957LKR/@@download/ENCFF957LKR.bigWig hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF268LPT bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF021QKM, ENCFF051LWI, ENCFF581ZJL, ENCFF965IIX 7165808 ENCODE Processing Pipeline d90c1a9913267c01a0226fecdb8d4e98 https://www.encodeproject.org/files/ENCFF268LPT/@@download/ENCFF268LPT.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF078LXS bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF021QKM, ENCFF051LWI 6475842 ENCODE Processing Pipeline 99400599479cd250e63e2448cfb3e94f https://www.encodeproject.org/files/ENCFF078LXS/@@download/ENCFF078LXS.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF927CKY bigBed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF087NBH 13224800 ENCODE Processing Pipeline b38912f2ea02cd5dc5741785d09bf231 https://www.encodeproject.org/files/ENCFF927CKY/@@download/ENCFF927CKY.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF981YXI bigBed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF078LXS 11157985 ENCODE Processing Pipeline 9c0ff07185ab120d9321affd2f36906d https://www.encodeproject.org/files/ENCFF981YXI/@@download/ENCFF981YXI.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF933YZM bigBed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF268LPT 13206765 ENCODE Processing Pipeline 0921eef6e22d45a6afef9234f4a812e7 https://www.encodeproject.org/files/ENCFF933YZM/@@download/ENCFF933YZM.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF135PKG bam unfiltered alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 100 ENCFF113QZV, ENCFF643CGH, ENCFF891LJI 3566212081 ENCODE Processing Pipeline 580a954560b7eb28efaf661164ab69fb https://www.encodeproject.org/files/ENCFF135PKG/@@download/ENCFF135PKG.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF830UYZ bam unfiltered alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF165JGK, ENCFF492UOJ, ENCFF643CGH 5488594334 ENCODE Processing Pipeline 75da7fd2324aab54421f00f9a48fc5da https://www.encodeproject.org/files/ENCFF830UYZ/@@download/ENCFF830UYZ.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF198WIX bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 100 ENCFF113QZV, ENCFF643CGH, ENCFF891LJI 2989825714 ENCODE Processing Pipeline f30fd822fe3a623512fb0c495c5064f5 https://www.encodeproject.org/files/ENCFF198WIX/@@download/ENCFF198WIX.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF293PYL bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF165JGK, ENCFF492UOJ, ENCFF643CGH 4563769834 ENCODE Processing Pipeline 68ca6779bd8fc0c253f2e6315bdb1e6f https://www.encodeproject.org/files/ENCFF293PYL/@@download/ENCFF293PYL.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF975PZB bigWig signal p-value ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF293PYL 1052271499 ENCODE Processing Pipeline ba5a3fc82e238e5999b6d20d7e32ecc0 https://www.encodeproject.org/files/ENCFF975PZB/@@download/ENCFF975PZB.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF908YGZ bigWig signal p-value ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF198WIX, ENCFF910IKB 953718233 ENCODE Processing Pipeline c8c4dc6191172eb26ed4500cc850dbd7 https://www.encodeproject.org/files/ENCFF908YGZ/@@download/ENCFF908YGZ.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF080SFO bigWig signal p-value ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF198WIX, ENCFF227IZS, ENCFF293PYL, ENCFF910IKB 1778421268 ENCODE Processing Pipeline 9bf8198e7d070fa762898f723271cc70 https://www.encodeproject.org/files/ENCFF080SFO/@@download/ENCFF080SFO.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF770YSX bigWig fold change over control ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF293PYL 1196236299 ENCODE Processing Pipeline bf4b90c37e7060afdc73f6da3dd4bc78 https://www.encodeproject.org/files/ENCFF770YSX/@@download/ENCFF770YSX.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF261EZF bigWig fold change over control ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF198WIX, ENCFF910IKB 980970162 ENCODE Processing Pipeline 5ac37765951e5af0f040f4e394b2772d https://www.encodeproject.org/files/ENCFF261EZF/@@download/ENCFF261EZF.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF150UQM bigWig fold change over control ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF198WIX, ENCFF227IZS, ENCFF293PYL, ENCFF910IKB 2025135153 ENCODE Processing Pipeline e90296be38dd86fde82a7cc66217ab51 https://www.encodeproject.org/files/ENCFF150UQM/@@download/ENCFF150UQM.bigWig GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF880SFY bigBed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF494VOF 13229449 ENCODE Processing Pipeline 0ba02c62a3849ca72c530d7f9a5dbb7c https://www.encodeproject.org/files/ENCFF880SFY/@@download/ENCFF880SFY.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF185XVM bigBed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF750CZH 13221036 ENCODE Processing Pipeline 47434b7dbfbc892af461267459e00812 https://www.encodeproject.org/files/ENCFF185XVM/@@download/ENCFF185XVM.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF750CZH bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF198WIX, ENCFF227IZS, ENCFF293PYL, ENCFF910IKB 7125461 ENCODE Processing Pipeline 16d80789ff5cde3098c32557300633e9 https://www.encodeproject.org/files/ENCFF750CZH/@@download/ENCFF750CZH.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF968PVP bigBed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF697PXU 11165029 ENCODE Processing Pipeline 44ad6251e6014c50c0d2f0407778bde2 https://www.encodeproject.org/files/ENCFF968PVP/@@download/ENCFF968PVP.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF697PXU bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF293PYL 6293987 ENCODE Processing Pipeline a8cb4c7b628dc43b2d67f9278f0993dc https://www.encodeproject.org/files/ENCFF697PXU/@@download/ENCFF697PXU.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF494VOF bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 ENCFF198WIX, ENCFF910IKB 6279709 ENCODE Processing Pipeline 91c4fbaa9b9a6269985032abfcbe9bcc https://www.encodeproject.org/files/ENCFF494VOF/@@download/ENCFF494VOF.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF570XZY bigBed narrowPeak optimal idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF442XXV 211202 ENCODE Processing Pipeline e464a8d0cc3c05403fb321ce26934377 https://www.encodeproject.org/files/ENCFF570XZY/@@download/ENCFF570XZY.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF442XXV bed narrowPeak optimal idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF419RSJ, ENCFF494VOF, ENCFF697PXU, ENCFF750CZH 82654 ENCODE Processing Pipeline 179c55cb971fe6cb2872ffee6eb0aaf2 https://www.encodeproject.org/files/ENCFF442XXV/@@download/ENCFF442XXV.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF091EWT bed narrowPeak conservative idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF419RSJ, ENCFF494VOF, ENCFF697PXU, ENCFF750CZH 40028 ENCODE Processing Pipeline c88bb1d36f22f5f63517a1a50d477c6d https://www.encodeproject.org/files/ENCFF091EWT/@@download/ENCFF091EWT.bed.gz GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF955FVO bigBed narrowPeak conservative idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF091EWT 141763 ENCODE Processing Pipeline 5bdc0298b9d896324d09028038cbb780 https://www.encodeproject.org/files/ENCFF955FVO/@@download/ENCFF955FVO.bigBed GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF523HKB bigBed narrowPeak conservative idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF915CYM 109617 ENCODE Processing Pipeline 3aa919771f5e9f5047afcf6f0749e3eb https://www.encodeproject.org/files/ENCFF523HKB/@@download/ENCFF523HKB.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF915CYM bed narrowPeak conservative idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF078LXS, ENCFF087NBH, ENCFF268LPT 32337 ENCODE Processing Pipeline 73d54e88b0afee4fcc960c6c1e6c6aee https://www.encodeproject.org/files/ENCFF915CYM/@@download/ENCFF915CYM.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF421KIV bed narrowPeak optimal idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF078LXS, ENCFF087NBH, ENCFF268LPT 66575 ENCODE Processing Pipeline 0da245067c2c9c95999d81f57436fdd0 https://www.encodeproject.org/files/ENCFF421KIV/@@download/ENCFF421KIV.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF694DGU bigBed narrowPeak optimal idr thresholded peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF421KIV 156074 ENCODE Processing Pipeline 685fc87c178b41848d995c6a1641ff71 https://www.encodeproject.org/files/ENCFF694DGU/@@download/ENCFF694DGU.bigBed hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF362UKM bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF807MUK 5088961795 ENCODE Processing Pipeline f46906c5a26c5cadd62bfd895925bf26 https://www.encodeproject.org/files/ENCFF362UKM/@@download/ENCFF362UKM.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF526WJF bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF807MUK 4909991038 ENCODE Processing Pipeline 39b3dee9e6677e5235f81696f778aefc https://www.encodeproject.org/files/ENCFF526WJF/@@download/ENCFF526WJF.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKI fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKM 2325920028 Michael Snyder, Stanford f3e499b93e9f4d64df9604928817d30f https://www.encodeproject.org/files/ENCFF002EKI/@@download/ENCFF002EKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKJ fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKT 2198116554 Michael Snyder, Stanford f1a9c555135528d749e94904b4e3f391 https://www.encodeproject.org/files/ENCFF002EKJ/@@download/ENCFF002EKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKM fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EKI 2366611655 Michael Snyder, Stanford 3a8a4bac3e2f8c156a35c1e84deb8536 https://www.encodeproject.org/files/ENCFF002EKM/@@download/ENCFF002EKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002EKT fastq reads ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EKJ 2242835483 Michael Snyder, Stanford 9faf15c5f8f689bc8e9be537bf0411f3 https://www.encodeproject.org/files/ENCFF002EKT/@@download/ENCFF002EKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002JGD bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF807MUK 3930497896 ENCODE Processing Pipeline 3bf546708f6c2602130f5add5e769911 https://www.encodeproject.org/files/ENCFF002JGD/@@download/ENCFF002JGD.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931ITC bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF807MUK 3795961046 ENCODE Processing Pipeline 7beaa909df175c7779f182f1772e5967 https://www.encodeproject.org/files/ENCFF931ITC/@@download/ENCFF931ITC.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF046BNG bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 1102301246 ENCODE Processing Pipeline 25bf07bcf6371aa0560521e9b6a0e232 https://www.encodeproject.org/files/ENCFF046BNG/@@download/ENCFF046BNG.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF327UEZ bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF002JGD, ENCFF287SKW, ENCFF931ITC, ENCFF941TZZ 1713393482 ENCODE Processing Pipeline 8fd5bcc3b5386a86460aa077661928e1 https://www.encodeproject.org/files/ENCFF327UEZ/@@download/ENCFF327UEZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF432GBP bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 1063429232 ENCODE Processing Pipeline 0b65e7c2e642f9f997c5d45c65da63d6 https://www.encodeproject.org/files/ENCFF432GBP/@@download/ENCFF432GBP.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931DSJ bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 1086276363 ENCODE Processing Pipeline eea89beb08edd00cf76714d76a6e6c94 https://www.encodeproject.org/files/ENCFF931DSJ/@@download/ENCFF931DSJ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF431KTX bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 1088726145 ENCODE Processing Pipeline df6da2892e975f8b5ddf16c9627d8ac3 https://www.encodeproject.org/files/ENCFF431KTX/@@download/ENCFF431KTX.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF279FLZ bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF002JGD, ENCFF287SKW, ENCFF931ITC, ENCFF941TZZ 2027795132 ENCODE Processing Pipeline 373aa5e6cab56985befc89a8efe3a082 https://www.encodeproject.org/files/ENCFF279FLZ/@@download/ENCFF279FLZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF420QNU bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF643CGH 4907454093 ENCODE Processing Pipeline c73f4df3fbb7aa4460cbc2dc92887918 https://www.encodeproject.org/files/ENCFF420QNU/@@download/ENCFF420QNU.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF852DJJ bam unfiltered alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF643CGH 5093279543 ENCODE Processing Pipeline 1b99a20767cc79e49f7b3bda1d7f62d0 https://www.encodeproject.org/files/ENCFF852DJJ/@@download/ENCFF852DJJ.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF849XDW bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF643CGH 3802571693 ENCODE Processing Pipeline 10cf7632fdce01b546e16f789ca60328 https://www.encodeproject.org/files/ENCFF849XDW/@@download/ENCFF849XDW.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF226FBM bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF643CGH 3973114767 ENCODE Processing Pipeline 4f930d90696465436d533ebc20b9afb1 https://www.encodeproject.org/files/ENCFF226FBM/@@download/ENCFF226FBM.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF432OJJ bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF849XDW, ENCFF879YMO 1124511789 ENCODE Processing Pipeline 6993c232ff09209ddc9cecee5ab2ecbb https://www.encodeproject.org/files/ENCFF432OJJ/@@download/ENCFF432OJJ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF019OTJ bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226FBM, ENCFF574BGV, ENCFF849XDW, ENCFF879YMO 1980519746 ENCODE Processing Pipeline 4951657ab3d33ba7f02417589dc056d2 https://www.encodeproject.org/files/ENCFF019OTJ/@@download/ENCFF019OTJ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF004DDK bigWig signal p-value ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF226FBM, ENCFF574BGV 979822777 ENCODE Processing Pipeline 53180d1bef3f3f814c31b1f1887ef403 https://www.encodeproject.org/files/ENCFF004DDK/@@download/ENCFF004DDK.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF903OEX bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF550DRQ 11386047 ENCODE Processing Pipeline 209df8652bd0b39b701c1937c6e5f4ba https://www.encodeproject.org/files/ENCFF903OEX/@@download/ENCFF903OEX.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF870FTO bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF849XDW, ENCFF879YMO 1088210227 ENCODE Processing Pipeline 3c0dfd60e44b9468f5ff366fbc012aec https://www.encodeproject.org/files/ENCFF870FTO/@@download/ENCFF870FTO.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF777PHZ bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF226FBM, ENCFF574BGV 1075787838 ENCODE Processing Pipeline ea60fc6bb47090ab40b7312249bda0cc https://www.encodeproject.org/files/ENCFF777PHZ/@@download/ENCFF777PHZ.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF217RFD bigWig fold change over control ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226FBM, ENCFF574BGV, ENCFF849XDW, ENCFF879YMO 2035365174 ENCODE Processing Pipeline b34f148e1b5725d53ecfffde865c6a28 https://www.encodeproject.org/files/ENCFF217RFD/@@download/ENCFF217RFD.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF379JVC bed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF166TCT, ENCFF419RSJ, ENCFF550DRQ, ENCFF890TBO 136856 ENCODE Processing Pipeline d25e043ff8954898a923920035dc1edf https://www.encodeproject.org/files/ENCFF379JVC/@@download/ENCFF379JVC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF166TCT bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF849XDW, ENCFF879YMO 6156223 ENCODE Processing Pipeline ae14c663bdba6db777c34cd3c1521816 https://www.encodeproject.org/files/ENCFF166TCT/@@download/ENCFF166TCT.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF550DRQ bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF226FBM, ENCFF574BGV 6075252 ENCODE Processing Pipeline 18fc7de65b36b9deeaa45f84e4693f8e https://www.encodeproject.org/files/ENCFF550DRQ/@@download/ENCFF550DRQ.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF109RPN bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF166TCT 13481135 ENCODE Processing Pipeline fc7e104aab4e5fa7aa6754c66f1f72dd https://www.encodeproject.org/files/ENCFF109RPN/@@download/ENCFF109RPN.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF890TBO bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226FBM, ENCFF574BGV, ENCFF849XDW, ENCFF879YMO 7072692 ENCODE Processing Pipeline 51b8e19b78d5329ef0e10e6db8b2b2e9 https://www.encodeproject.org/files/ENCFF890TBO/@@download/ENCFF890TBO.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF406PMG bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF890TBO 13314181 ENCODE Processing Pipeline cac1f805ecbdadac40a47cc86d0bdce6 https://www.encodeproject.org/files/ENCFF406PMG/@@download/ENCFF406PMG.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF124SIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF379JVC 297519 ENCODE Processing Pipeline 97866e6f3ca383a15fa39400ab09e175 https://www.encodeproject.org/files/ENCFF124SIJ/@@download/ENCFF124SIJ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF417WPC bed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF166TCT, ENCFF419RSJ, ENCFF550DRQ, ENCFF890TBO 252129 ENCODE Processing Pipeline 9872e956eae773a04469d0199b0deeee https://www.encodeproject.org/files/ENCFF417WPC/@@download/ENCFF417WPC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF022PXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF417WPC 553846 ENCODE Processing Pipeline f2365477f6e9631b5b957e4b46adc763 https://www.encodeproject.org/files/ENCFF022PXQ/@@download/ENCFF022PXQ.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF782MKD bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 6058390 ENCODE Processing Pipeline ae453d52e1d9748a41d0e88ba30dd4fe https://www.encodeproject.org/files/ENCFF782MKD/@@download/ENCFF782MKD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF823PTQ bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF782MKD 11366169 ENCODE Processing Pipeline 1387f5ddb906f797b06f0334674aa00f https://www.encodeproject.org/files/ENCFF823PTQ/@@download/ENCFF823PTQ.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF219UCA bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 6147706 ENCODE Processing Pipeline 836543c3ab382799f66b46fae9aeb8a4 https://www.encodeproject.org/files/ENCFF219UCA/@@download/ENCFF219UCA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF608ISH bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF630UZO 13328076 ENCODE Processing Pipeline 6a3358a99b65bead5719a3e559a1d18a https://www.encodeproject.org/files/ENCFF608ISH/@@download/ENCFF608ISH.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF630UZO bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF002JGD, ENCFF287SKW, ENCFF931ITC, ENCFF941TZZ 7089030 ENCODE Processing Pipeline 05aa00e9a99e2f275f82153b617aecf7 https://www.encodeproject.org/files/ENCFF630UZO/@@download/ENCFF630UZO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF982WPP bigBed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF219UCA 13464350 ENCODE Processing Pipeline b8973c570be3a9875b0e4029fe115bd9 https://www.encodeproject.org/files/ENCFF982WPP/@@download/ENCFF982WPP.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF762AZG bed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF219UCA, ENCFF630UZO, ENCFF782MKD 142482 ENCODE Processing Pipeline 04c96f4e6341541801ffe906cd938dfc https://www.encodeproject.org/files/ENCFF762AZG/@@download/ENCFF762AZG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF827ZLB bed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF219UCA, ENCFF630UZO, ENCFF782MKD 257031 ENCODE Processing Pipeline 8522928cab6ad14973b5bb00ec993f01 https://www.encodeproject.org/files/ENCFF827ZLB/@@download/ENCFF827ZLB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF496ARE bigBed narrowPeak conservative idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF762AZG 303905 ENCODE Processing Pipeline 495302b925719b9e16971946e5781271 https://www.encodeproject.org/files/ENCFF496ARE/@@download/ENCFF496ARE.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF275LWN bigBed narrowPeak optimal idr thresholded peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF827ZLB 560445 ENCODE Processing Pipeline 36ce59609e3875597f8052e951754331 https://www.encodeproject.org/files/ENCFF275LWN/@@download/ENCFF275LWN.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF722DDE bam unfiltered alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085YNE, ENCFF460NQX, ENCFF807MUK 3592887886 ENCODE Processing Pipeline 2fb7f43d59d8a6f7d476d2a37f0dd877 https://www.encodeproject.org/files/ENCFF722DDE/@@download/ENCFF722DDE.bam hg19 released borderline replicate concordance, low read depth ENCFF168OGV bam unfiltered alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 100 ENCFF308IIP, ENCFF724LAL, ENCFF807MUK 3613421831 ENCODE Processing Pipeline e44d998ee4c674624917a48dd7cb4e1a https://www.encodeproject.org/files/ENCFF168OGV/@@download/ENCFF168OGV.bam hg19 released borderline replicate concordance, low read depth ENCFF308IIP fastq reads ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF724LAL 1592266730 Michael Snyder, Stanford b4f42bb28bc0688e41483d7e8737c865 SRA:SRR5112423 https://www.encodeproject.org/files/ENCFF308IIP/@@download/ENCFF308IIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance, low read depth ENCFF724LAL fastq reads ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF308IIP 1626864037 Michael Snyder, Stanford a8f12882d07516b2601fdd840db5e81c SRA:SRR5112423 https://www.encodeproject.org/files/ENCFF724LAL/@@download/ENCFF724LAL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance, low read depth ENCFF460NQX fastq reads ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF085YNE 1573121906 Michael Snyder, Stanford 4da6a5f15e5dd98c4d164f95090a05e7 SRA:SRR5112422 https://www.encodeproject.org/files/ENCFF460NQX/@@download/ENCFF460NQX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance, low read depth ENCFF085YNE fastq reads ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF460NQX 1616457957 Michael Snyder, Stanford cf038f92b6153da9a8f7f19033de2369 SRA:SRR5112422 https://www.encodeproject.org/files/ENCFF085YNE/@@download/ENCFF085YNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance, low read depth ENCFF198QUT bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 100 ENCFF308IIP, ENCFF724LAL, ENCFF807MUK 3088275087 ENCODE Processing Pipeline 6e7064729bca34ee338cbf28c70c0ca9 https://www.encodeproject.org/files/ENCFF198QUT/@@download/ENCFF198QUT.bam hg19 released borderline replicate concordance, low read depth ENCFF123UZJ bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085YNE, ENCFF460NQX, ENCFF807MUK 2994440430 ENCODE Processing Pipeline 70d217edc9ea00915ff29e9f4e7bbddf https://www.encodeproject.org/files/ENCFF123UZJ/@@download/ENCFF123UZJ.bam hg19 released borderline replicate concordance, low read depth ENCFF821MHO bigWig signal p-value ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF123UZJ 885725827 ENCODE Processing Pipeline 0778c02c780a20978b04baf6ab210cc4 https://www.encodeproject.org/files/ENCFF821MHO/@@download/ENCFF821MHO.bigWig hg19 released borderline replicate concordance, low read depth ENCFF787FGZ bigWig signal p-value ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF198QUT, ENCFF583FAG 958653784 ENCODE Processing Pipeline 1f71fb80023a1bdbf5e4f12170655e57 https://www.encodeproject.org/files/ENCFF787FGZ/@@download/ENCFF787FGZ.bigWig hg19 released borderline replicate concordance, low read depth ENCFF082KSM bigWig signal p-value ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF123UZJ, ENCFF198QUT, ENCFF583FAG 1397648604 ENCODE Processing Pipeline fa39b3ecac297d1bffa13c3c8452d067 https://www.encodeproject.org/files/ENCFF082KSM/@@download/ENCFF082KSM.bigWig hg19 released borderline replicate concordance, low read depth ENCFF599WQX bigWig fold change over control ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF198QUT, ENCFF583FAG 896493097 ENCODE Processing Pipeline 7560e957e62562a57139f487dd546194 https://www.encodeproject.org/files/ENCFF599WQX/@@download/ENCFF599WQX.bigWig hg19 released borderline replicate concordance, low read depth ENCFF261FEZ bigWig fold change over control ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF123UZJ 926284532 ENCODE Processing Pipeline f99eb653ef62d46c01d50684f67d3a9a https://www.encodeproject.org/files/ENCFF261FEZ/@@download/ENCFF261FEZ.bigWig hg19 released borderline replicate concordance, low read depth ENCFF154RQE bigWig fold change over control ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF123UZJ, ENCFF198QUT, ENCFF583FAG 1812911276 ENCODE Processing Pipeline b191fd6ea533a65ea5b8c96ee7b6a6f1 https://www.encodeproject.org/files/ENCFF154RQE/@@download/ENCFF154RQE.bigWig hg19 released borderline replicate concordance, low read depth ENCFF185LGF bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF123UZJ 5913094 ENCODE Processing Pipeline 47df0023443cb72997dac6aa2d0ad90f https://www.encodeproject.org/files/ENCFF185LGF/@@download/ENCFF185LGF.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF134UIM bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF198QUT, ENCFF583FAG 5681608 ENCODE Processing Pipeline e7854ed555b792a50ba5d4d7d56ece65 https://www.encodeproject.org/files/ENCFF134UIM/@@download/ENCFF134UIM.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF010OCS bigBed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF185LGF 11140429 ENCODE Processing Pipeline 91f1d99bd950e5b1766d843a0613bae0 https://www.encodeproject.org/files/ENCFF010OCS/@@download/ENCFF010OCS.bigBed hg19 released borderline replicate concordance, low read depth ENCFF262ETM bigBed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF134UIM 11195229 ENCODE Processing Pipeline 9380b091af4bb2d6311e423af5f067b2 https://www.encodeproject.org/files/ENCFF262ETM/@@download/ENCFF262ETM.bigBed hg19 released borderline replicate concordance, low read depth ENCFF096FDT bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF123UZJ, ENCFF198QUT, ENCFF583FAG 6787418 ENCODE Processing Pipeline 8468c8639732bef9cf24cf50a230a8d0 https://www.encodeproject.org/files/ENCFF096FDT/@@download/ENCFF096FDT.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF227EIC bigBed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF096FDT 11118205 ENCODE Processing Pipeline bdff5ee35a6693e15122a9dc68624440 https://www.encodeproject.org/files/ENCFF227EIC/@@download/ENCFF227EIC.bigBed hg19 released borderline replicate concordance, low read depth ENCFF998NFM bam unfiltered alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085YNE, ENCFF460NQX, ENCFF643CGH 3598661214 ENCODE Processing Pipeline 21543ac4f5631c552290bc3d7fc3776c https://www.encodeproject.org/files/ENCFF998NFM/@@download/ENCFF998NFM.bam GRCh38 released borderline replicate concordance, low read depth ENCFF033ITL bam unfiltered alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 100 ENCFF308IIP, ENCFF643CGH, ENCFF724LAL 3620602058 ENCODE Processing Pipeline 65fd960cba8b666f7100141eb20b60b1 https://www.encodeproject.org/files/ENCFF033ITL/@@download/ENCFF033ITL.bam GRCh38 released borderline replicate concordance, low read depth ENCFF014OEB bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085YNE, ENCFF460NQX, ENCFF643CGH 2999132986 ENCODE Processing Pipeline 3a82001e38638df43ffb585f5e625177 https://www.encodeproject.org/files/ENCFF014OEB/@@download/ENCFF014OEB.bam GRCh38 released borderline replicate concordance, low read depth ENCFF521YRB bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 100 ENCFF308IIP, ENCFF643CGH, ENCFF724LAL 3090826032 ENCODE Processing Pipeline e0daeea4f99aebbcbd8f80f770b3bb9c https://www.encodeproject.org/files/ENCFF521YRB/@@download/ENCFF521YRB.bam GRCh38 released borderline replicate concordance, low read depth ENCFF401LPE bigWig signal p-value ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF521YRB 999873024 ENCODE Processing Pipeline 3261bbe5280b356860e42b5591762e25 https://www.encodeproject.org/files/ENCFF401LPE/@@download/ENCFF401LPE.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF547TUD bigWig signal p-value ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF014OEB, ENCFF291AFY 877330195 ENCODE Processing Pipeline 534c86d5cb6ac87048be0acdad9ef4d9 https://www.encodeproject.org/files/ENCFF547TUD/@@download/ENCFF547TUD.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF215JEP bigWig signal p-value ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF014OEB, ENCFF291AFY, ENCFF426RDP, ENCFF521YRB 1666748246 ENCODE Processing Pipeline 33e07390a8cec72ad1104b6e5c43cf98 https://www.encodeproject.org/files/ENCFF215JEP/@@download/ENCFF215JEP.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF007XEM bigWig fold change over control ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF521YRB 898616576 ENCODE Processing Pipeline 5388fdf167a5b3de046054a7d2423c29 https://www.encodeproject.org/files/ENCFF007XEM/@@download/ENCFF007XEM.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF876OZO bigWig fold change over control ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF014OEB, ENCFF291AFY 956805934 ENCODE Processing Pipeline e5eae944d981d5be3c57fbede986b579 https://www.encodeproject.org/files/ENCFF876OZO/@@download/ENCFF876OZO.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF017WTF bigWig fold change over control ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF014OEB, ENCFF291AFY, ENCFF426RDP, ENCFF521YRB 1784890219 ENCODE Processing Pipeline 9c0c03a8fc2bb9daec38a6da4528e1ed https://www.encodeproject.org/files/ENCFF017WTF/@@download/ENCFF017WTF.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF007PWS bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF014OEB, ENCFF291AFY 5735599 ENCODE Processing Pipeline 4d806a50535e58300ca60a61ddc2ef26 https://www.encodeproject.org/files/ENCFF007PWS/@@download/ENCFF007PWS.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF924QHJ bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF014OEB, ENCFF291AFY, ENCFF426RDP, ENCFF521YRB 6679864 ENCODE Processing Pipeline a6c8d34403955fd80d3a5e1a9ac13a3c https://www.encodeproject.org/files/ENCFF924QHJ/@@download/ENCFF924QHJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF899DDC bigBed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF007PWS 11139044 ENCODE Processing Pipeline 43c09258fe733b923bb6ca671c48e3f3 https://www.encodeproject.org/files/ENCFF899DDC/@@download/ENCFF899DDC.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF479QNJ bigBed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF924QHJ 11134887 ENCODE Processing Pipeline 42dc1d23c21d816d2d792694ac31a3b3 https://www.encodeproject.org/files/ENCFF479QNJ/@@download/ENCFF479QNJ.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF610XLJ bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF521YRB 5551051 ENCODE Processing Pipeline 045b8d3b3893cf864b9fcfe164f3b123 https://www.encodeproject.org/files/ENCFF610XLJ/@@download/ENCFF610XLJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF646LTT bigBed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF610XLJ 11173116 ENCODE Processing Pipeline 40ba4b3888e525a8aa33c0cd9b5fe33f https://www.encodeproject.org/files/ENCFF646LTT/@@download/ENCFF646LTT.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF720PZA bed narrowPeak optimal idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF007PWS, ENCFF419RSJ, ENCFF610XLJ, ENCFF924QHJ 22735 ENCODE Processing Pipeline 0fa59eff3e782145682af6db245c929d https://www.encodeproject.org/files/ENCFF720PZA/@@download/ENCFF720PZA.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF062CWH bigBed narrowPeak conservative idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF317VVJ 82845 ENCODE Processing Pipeline a973b5e1ec08b3430a334bc47ae79c85 https://www.encodeproject.org/files/ENCFF062CWH/@@download/ENCFF062CWH.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF007ENR bigBed narrowPeak optimal idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF720PZA 113676 ENCODE Processing Pipeline 91afdd9ca5af2ba97317b32d12bba2c0 https://www.encodeproject.org/files/ENCFF007ENR/@@download/ENCFF007ENR.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF317VVJ bed narrowPeak conservative idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF007PWS, ENCFF419RSJ, ENCFF610XLJ, ENCFF924QHJ 8325 ENCODE Processing Pipeline 8096ce89e19dfe362a82e8a069dd3f4d https://www.encodeproject.org/files/ENCFF317VVJ/@@download/ENCFF317VVJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF054UMX bed narrowPeak conservative idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF096FDT, ENCFF134UIM, ENCFF185LGF 6320 ENCODE Processing Pipeline 0271a840e2151f8ad68bc696463d5094 https://www.encodeproject.org/files/ENCFF054UMX/@@download/ENCFF054UMX.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF255EFA bigBed narrowPeak conservative idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF054UMX 69384 ENCODE Processing Pipeline 44838976182dffb1fc4b5ad3103627dc https://www.encodeproject.org/files/ENCFF255EFA/@@download/ENCFF255EFA.bigBed hg19 released borderline replicate concordance, low read depth ENCFF847WAB bigBed narrowPeak optimal idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF615FIR 90274 ENCODE Processing Pipeline 6047f28d0edd9b8fe42278c60990adb0 https://www.encodeproject.org/files/ENCFF847WAB/@@download/ENCFF847WAB.bigBed hg19 released borderline replicate concordance, low read depth ENCFF615FIR bed narrowPeak optimal idr thresholded peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF096FDT, ENCFF134UIM, ENCFF185LGF 16924 ENCODE Processing Pipeline 87ab6ffc70c2d9d03c2b87caf8e4673b https://www.encodeproject.org/files/ENCFF615FIR/@@download/ENCFF615FIR.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF000OTC bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OTO 703867849 Richard Myers, HAIB c61d83700ac2f5e8d56ccc2125c11eca https://www.encodeproject.org/files/ENCFF000OTC/@@download/ENCFF000OTC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000OTD bigBed broadPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCI 137581 Richard Myers, HAIB 206b5b8c125e51fa83618250afb13eb9 https://www.encodeproject.org/files/ENCFF000OTD/@@download/ENCFF000OTD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000OTE bigBed broadPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCJ 121250 Richard Myers, HAIB 7d127c22bc6bac91bfa87754fb3e041d https://www.encodeproject.org/files/ENCFF000OTE/@@download/ENCFF000OTE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000OTF bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OTR 799904419 Richard Myers, HAIB 5f6bee8dc88615c13f237dc74fd66b9a https://www.encodeproject.org/files/ENCFF000OTF/@@download/ENCFF000OTF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000OTH bigWig raw signal ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 3343504 Richard Myers, HAIB 62ce5511eafb2037560ad057080afd46 https://www.encodeproject.org/files/ENCFF000OTH/@@download/ENCFF000OTH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OTI bigWig raw signal ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 4131423 Richard Myers, HAIB da4be0aa3c935a426eb777fa45d78ceb https://www.encodeproject.org/files/ENCFF000OTI/@@download/ENCFF000OTI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OTO fastq reads ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 658029629 Richard Myers, HAIB a6dbb7d86237603417779c2bc20f66b5 https://www.encodeproject.org/files/ENCFF000OTO/@@download/ENCFF000OTO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000OTR fastq reads ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 887703055 Richard Myers, HAIB c605430d1949920e9f47eefeb6af17ab https://www.encodeproject.org/files/ENCFF000OTR/@@download/ENCFF000OTR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF001UCI bed broadPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 48058 Richard Myers, HAIB 31f2d3cefa7db6d2d71222e601eff638 https://www.encodeproject.org/files/ENCFF001UCI/@@download/ENCFF001UCI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UCJ bed broadPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 35574 Richard Myers, HAIB 164dbf1adb9dfb0c58ad110de5a70a1e https://www.encodeproject.org/files/ENCFF001UCJ/@@download/ENCFF001UCJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002CJJ bed narrowPeak optimal idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 74149 ENCODE Consortium Analysis Working Group bcd6754c04414593085c871e04823a05 https://www.encodeproject.org/files/ENCFF002CJJ/@@download/ENCFF002CJJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF736VCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJJ 192237 ENCODE Consortium 11d113ce6888a1198e19f79ea0831541 https://www.encodeproject.org/files/ENCFF736VCS/@@download/ENCFF736VCS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF105GPY bam unfiltered alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTO, ENCFF643CGH 858715265 ENCODE Processing Pipeline 7e1944c06d4c6eee692a52c05b97661a https://www.encodeproject.org/files/ENCFF105GPY/@@download/ENCFF105GPY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF892YBG bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTO, ENCFF643CGH 518254704 ENCODE Processing Pipeline e8e32d6de18fa7d81dfafb828780c675 https://www.encodeproject.org/files/ENCFF892YBG/@@download/ENCFF892YBG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF488UYN bam unfiltered alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTR, ENCFF643CGH 1125902631 ENCODE Processing Pipeline d3cf9431106aadad8ba9869024a391a0 https://www.encodeproject.org/files/ENCFF488UYN/@@download/ENCFF488UYN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF588EKB bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTR, ENCFF643CGH 600799946 ENCODE Processing Pipeline e2233178b7eafeda1bf7c9e73d7847a5 https://www.encodeproject.org/files/ENCFF588EKB/@@download/ENCFF588EKB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF444WHJ bam unfiltered alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTO, ENCFF807MUK 855847604 ENCODE Processing Pipeline 131ff6bbb363cf5a5a21d6920769512b https://www.encodeproject.org/files/ENCFF444WHJ/@@download/ENCFF444WHJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF503ZQQ bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTO, ENCFF807MUK 518679431 ENCODE Processing Pipeline 0d2a773496914faa4113d3cb9b66b3cd https://www.encodeproject.org/files/ENCFF503ZQQ/@@download/ENCFF503ZQQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF862EPZ bam unfiltered alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTR, ENCFF807MUK 1121745348 ENCODE Processing Pipeline add597fff47cf54c6cf84ace53ad52fb https://www.encodeproject.org/files/ENCFF862EPZ/@@download/ENCFF862EPZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF184JSZ bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTR, ENCFF807MUK 601153343 ENCODE Processing Pipeline a5abdfa13c65f62179f0317a93ebd2f4 https://www.encodeproject.org/files/ENCFF184JSZ/@@download/ENCFF184JSZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF321ACV bigWig signal p-value ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF892YBG 334828172 ENCODE Processing Pipeline f8f31a7793f482fe44b00789fc9a807a https://www.encodeproject.org/files/ENCFF321ACV/@@download/ENCFF321ACV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF481FYX bigWig signal p-value ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF588EKB 354762479 ENCODE Processing Pipeline 1de687eceaac6965a7c0f75a6c448622 https://www.encodeproject.org/files/ENCFF481FYX/@@download/ENCFF481FYX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF787UNR bigWig signal p-value ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF588EKB, ENCFF892YBG 506592635 ENCODE Processing Pipeline aeee33c5cae65f6a9e0e0a47a2037f68 https://www.encodeproject.org/files/ENCFF787UNR/@@download/ENCFF787UNR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF737SHB bigWig fold change over control ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF892YBG 248981643 ENCODE Processing Pipeline a4d4b9327d4ea27d79c42d493781d1de https://www.encodeproject.org/files/ENCFF737SHB/@@download/ENCFF737SHB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF665USC bigWig fold change over control ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF588EKB, ENCFF892YBG 478767953 ENCODE Processing Pipeline de3daa734d94fc0822b07f478274375f https://www.encodeproject.org/files/ENCFF665USC/@@download/ENCFF665USC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF028IYH bigWig fold change over control ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF588EKB 294201697 ENCODE Processing Pipeline 1167e974e11e64078d82523291694808 https://www.encodeproject.org/files/ENCFF028IYH/@@download/ENCFF028IYH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF422HXW bigBed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF584FLP 10904992 ENCODE Processing Pipeline 1069d599f9adde9c524ecce66bc3b912 https://www.encodeproject.org/files/ENCFF422HXW/@@download/ENCFF422HXW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF463CUD bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF892YBG 3748451 ENCODE Processing Pipeline b38544b2bf5119974975ce145f4d0a1f https://www.encodeproject.org/files/ENCFF463CUD/@@download/ENCFF463CUD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF226NUI bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF588EKB 3546383 ENCODE Processing Pipeline 2be5c1221849e3bb40d06c7b3af0fd4b https://www.encodeproject.org/files/ENCFF226NUI/@@download/ENCFF226NUI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF584FLP bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF588EKB, ENCFF892YBG 4095493 ENCODE Processing Pipeline f9f68c7a9f60c0c75ce0621c5622ed9a https://www.encodeproject.org/files/ENCFF584FLP/@@download/ENCFF584FLP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF822PXT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF510ZPK 131435 ENCODE Processing Pipeline 27d6175ad86951afbcdf42472b316678 https://www.encodeproject.org/files/ENCFF822PXT/@@download/ENCFF822PXT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF799LSD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF644BNN 139707 ENCODE Processing Pipeline de86961dbe94824982f49010cb7c9a01 https://www.encodeproject.org/files/ENCFF799LSD/@@download/ENCFF799LSD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF197KGY bigBed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF463CUD 8167782 ENCODE Processing Pipeline 98fa0de826c22c1b7e0d1a72fd04fcbc https://www.encodeproject.org/files/ENCFF197KGY/@@download/ENCFF197KGY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF644BNN bed narrowPeak optimal idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226NUI, ENCFF419RSJ, ENCFF463CUD, ENCFF584FLP 58211 ENCODE Processing Pipeline ef33160da1dbc7d345f7eb36065717f9 https://www.encodeproject.org/files/ENCFF644BNN/@@download/ENCFF644BNN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF123ZIY bigBed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF226NUI 7820688 ENCODE Processing Pipeline dc90b8de9f0050e4ba3f091bc62c5bdf https://www.encodeproject.org/files/ENCFF123ZIY/@@download/ENCFF123ZIY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF510ZPK bed narrowPeak conservative idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226NUI, ENCFF419RSJ, ENCFF463CUD, ENCFF584FLP 51759 ENCODE Processing Pipeline 2cb47143b4196f2cd9eb0ba7d067b4bb https://www.encodeproject.org/files/ENCFF510ZPK/@@download/ENCFF510ZPK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF572EPV bigWig signal p-value ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF503ZQQ 388913815 ENCODE Processing Pipeline e397727d0066b6e7257c37ec6b4ec2f1 https://www.encodeproject.org/files/ENCFF572EPV/@@download/ENCFF572EPV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF825QYY bigWig fold change over control ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF503ZQQ 249378433 ENCODE Processing Pipeline a7e0acff47a2f90be3bdae66575f777a https://www.encodeproject.org/files/ENCFF825QYY/@@download/ENCFF825QYY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF049ZUB bigWig signal p-value ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF184JSZ, ENCFF356DXM 409115262 ENCODE Processing Pipeline 79bf676ccb2f80442aa6699e2698ecd8 https://www.encodeproject.org/files/ENCFF049ZUB/@@download/ENCFF049ZUB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF811OZV bigWig signal p-value ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184JSZ, ENCFF356DXM, ENCFF503ZQQ 506993784 ENCODE Processing Pipeline 44d3cdc7da1dc43d71550dd6e5b11701 https://www.encodeproject.org/files/ENCFF811OZV/@@download/ENCFF811OZV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF735DPS bigWig fold change over control ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF184JSZ, ENCFF356DXM 294733876 ENCODE Processing Pipeline a69672dc4e329785dc258ffa52c59578 https://www.encodeproject.org/files/ENCFF735DPS/@@download/ENCFF735DPS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF095XBB bigWig fold change over control ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184JSZ, ENCFF356DXM, ENCFF503ZQQ 478983117 ENCODE Processing Pipeline c1b647cb27878747c4776aa102380d5c https://www.encodeproject.org/files/ENCFF095XBB/@@download/ENCFF095XBB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF883CRS bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF184JSZ, ENCFF356DXM 3590795 ENCODE Processing Pipeline a541d39a03f17cf870926ee14e6558be https://www.encodeproject.org/files/ENCFF883CRS/@@download/ENCFF883CRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF946SYP bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184JSZ, ENCFF356DXM, ENCFF503ZQQ 4128305 ENCODE Processing Pipeline 3c595db5b6ba55d32b618ebd062a2409 https://www.encodeproject.org/files/ENCFF946SYP/@@download/ENCFF946SYP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF652BUJ bigBed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF493YRO 8134163 ENCODE Processing Pipeline dc5b72652da5407ea8aa30166dee171b https://www.encodeproject.org/files/ENCFF652BUJ/@@download/ENCFF652BUJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF091EFZ bigBed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF883CRS 7960724 ENCODE Processing Pipeline 3225a2a8b14f718ab467491644350200 https://www.encodeproject.org/files/ENCFF091EFZ/@@download/ENCFF091EFZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF033AHK bigBed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF946SYP 11013442 ENCODE Processing Pipeline 44d59182409d2aa0507c922553bd2542 https://www.encodeproject.org/files/ENCFF033AHK/@@download/ENCFF033AHK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF318SDF bed narrowPeak optimal idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF493YRO, ENCFF883CRS, ENCFF946SYP 56542 ENCODE Processing Pipeline a99c9330c815a30deec33b4d13251ca2 https://www.encodeproject.org/files/ENCFF318SDF/@@download/ENCFF318SDF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF493YRO bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF503ZQQ 3734763 ENCODE Processing Pipeline 1bf74b6f5643a0762889de42c7498a65 https://www.encodeproject.org/files/ENCFF493YRO/@@download/ENCFF493YRO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF198GZP bed narrowPeak conservative idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF493YRO, ENCFF883CRS, ENCFF946SYP 50431 ENCODE Processing Pipeline a108f40ec14e2e509b40756808063103 https://www.encodeproject.org/files/ENCFF198GZP/@@download/ENCFF198GZP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF842OOY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF198GZP 128696 ENCODE Processing Pipeline 6ef7475ffb168acc664d9cadf3523a58 https://www.encodeproject.org/files/ENCFF842OOY/@@download/ENCFF842OOY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF305RVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318SDF 136685 ENCODE Processing Pipeline df65ba70d88f3ae33afea8a96b38b9cc https://www.encodeproject.org/files/ENCFF305RVH/@@download/ENCFF305RVH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF838JGE bam unfiltered alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBF, ENCFF807MUK 1227527483 ENCODE Processing Pipeline 964a7f91db0ebba212707934c8bf6b71 https://www.encodeproject.org/files/ENCFF838JGE/@@download/ENCFF838JGE.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF847QOA bam unfiltered alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBM, ENCFF807MUK 1128168732 ENCODE Processing Pipeline 372751e188c7ddd7d08655956e1b27d8 https://www.encodeproject.org/files/ENCFF847QOA/@@download/ENCFF847QOA.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EBF fastq reads ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 858011979 Michael Snyder, Stanford 11eafb3399ea128bd4a363f0b4d61089 https://www.encodeproject.org/files/ENCFF002EBF/@@download/ENCFF002EBF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EBM fastq reads ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 776434783 Michael Snyder, Stanford 18e65d00d4d2040af856f19257ae349f https://www.encodeproject.org/files/ENCFF002EBM/@@download/ENCFF002EBM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF589BQJ bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBF, ENCFF807MUK 825488894 ENCODE Processing Pipeline 91280fd034e5aa558ff0569266920de5 https://www.encodeproject.org/files/ENCFF589BQJ/@@download/ENCFF589BQJ.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF509WOE bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBM, ENCFF807MUK 746119387 ENCODE Processing Pipeline 5e2f4ecc2bea12793448debeac34c6ad https://www.encodeproject.org/files/ENCFF509WOE/@@download/ENCFF509WOE.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF302YXA bigWig signal p-value ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF509WOE, ENCFF879OQC 552404521 ENCODE Processing Pipeline 7f395c5409a36bc4b700a2c24fcaca37 https://www.encodeproject.org/files/ENCFF302YXA/@@download/ENCFF302YXA.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF477CPI bigWig fold change over control ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF509WOE, ENCFF879OQC 425696409 ENCODE Processing Pipeline 439fb20716b01a1092bbbec28e12518a https://www.encodeproject.org/files/ENCFF477CPI/@@download/ENCFF477CPI.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF120SAO bam unfiltered alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBF, ENCFF643CGH 1233091879 ENCODE Processing Pipeline ed371b369b54ee3de63cee025bdd3ee2 https://www.encodeproject.org/files/ENCFF120SAO/@@download/ENCFF120SAO.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF750NWO bam unfiltered alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBM, ENCFF643CGH 1133281745 ENCODE Processing Pipeline 6d48763f280a6806dd949fdf4c21471c https://www.encodeproject.org/files/ENCFF750NWO/@@download/ENCFF750NWO.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF098FBI bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBM, ENCFF643CGH 745621246 ENCODE Processing Pipeline 634c1e7eacce6a6242013a57e06d1571 https://www.encodeproject.org/files/ENCFF098FBI/@@download/ENCFF098FBI.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF720GSG bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBF, ENCFF643CGH 824899062 ENCODE Processing Pipeline 36592d05149ae4dcf74f8c12200d00fb https://www.encodeproject.org/files/ENCFF720GSG/@@download/ENCFF720GSG.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF361TAB bigWig signal p-value ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF720GSG 469719422 ENCODE Processing Pipeline 649548ed7ff9ec39f82c6cc278436f7a https://www.encodeproject.org/files/ENCFF361TAB/@@download/ENCFF361TAB.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF114CDP bigWig signal p-value ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF098FBI, ENCFF577FNG 508636132 ENCODE Processing Pipeline e49557b7974efeb6764adc7c388dd242 https://www.encodeproject.org/files/ENCFF114CDP/@@download/ENCFF114CDP.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF281FEJ bigWig signal p-value ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF098FBI, ENCFF156FED, ENCFF577FNG, ENCFF720GSG 976571231 ENCODE Processing Pipeline 194646c0e538441f3c50867f504b040a https://www.encodeproject.org/files/ENCFF281FEJ/@@download/ENCFF281FEJ.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF662RUC bigWig fold change over control ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF720GSG 456739790 ENCODE Processing Pipeline a20c1b8a275386c3b0cb8b940fc7152a https://www.encodeproject.org/files/ENCFF662RUC/@@download/ENCFF662RUC.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF301LGK bigWig fold change over control ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF098FBI, ENCFF577FNG 427565658 ENCODE Processing Pipeline 71ef1626faf9bdc6f0ec88a200e19a27 https://www.encodeproject.org/files/ENCFF301LGK/@@download/ENCFF301LGK.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF847VYT bigWig fold change over control ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF098FBI, ENCFF156FED, ENCFF577FNG, ENCFF720GSG 976776270 ENCODE Processing Pipeline b6c3d493e806fc0c1ceae7fa12bca108 https://www.encodeproject.org/files/ENCFF847VYT/@@download/ENCFF847VYT.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF203IZG bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF720GSG 4858632 ENCODE Processing Pipeline 30ee2cd134df0818f98c26123c3e8aa4 https://www.encodeproject.org/files/ENCFF203IZG/@@download/ENCFF203IZG.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF563HRQ bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF098FBI, ENCFF156FED, ENCFF577FNG, ENCFF720GSG 6487051 ENCODE Processing Pipeline b27a2fd39211f8da7a6a39f6d249d22d https://www.encodeproject.org/files/ENCFF563HRQ/@@download/ENCFF563HRQ.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF608MIU bigBed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF203IZG 10951220 ENCODE Processing Pipeline 24e4480841a8d9ff0b8814de459ab303 https://www.encodeproject.org/files/ENCFF608MIU/@@download/ENCFF608MIU.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF141FCD bigBed narrowPeak conservative idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF012KDB 289742 ENCODE Processing Pipeline b72d0d8c0212addd9dcd04254afcb8e3 https://www.encodeproject.org/files/ENCFF141FCD/@@download/ENCFF141FCD.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF378JOP bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF098FBI, ENCFF577FNG 5164808 ENCODE Processing Pipeline d801f1cf9185c00a1f9f2a3a57990e29 https://www.encodeproject.org/files/ENCFF378JOP/@@download/ENCFF378JOP.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF433GTV bigBed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF378JOP 10977574 ENCODE Processing Pipeline b101506645ada98369f36867985c74e2 https://www.encodeproject.org/files/ENCFF433GTV/@@download/ENCFF433GTV.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF129ZYO bigBed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF563HRQ 13346565 ENCODE Processing Pipeline 96f0152bb12cc547fae8d150dba9087d https://www.encodeproject.org/files/ENCFF129ZYO/@@download/ENCFF129ZYO.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF084BUP bed narrowPeak optimal idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF203IZG, ENCFF378JOP, ENCFF419RSJ, ENCFF563HRQ 161589 ENCODE Processing Pipeline fd1b4333e0049b41fe0deec2b3de53df https://www.encodeproject.org/files/ENCFF084BUP/@@download/ENCFF084BUP.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF012KDB bed narrowPeak conservative idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF203IZG, ENCFF378JOP, ENCFF419RSJ, ENCFF563HRQ 130911 ENCODE Processing Pipeline 2785b111587f478842a28882a47655b6 https://www.encodeproject.org/files/ENCFF012KDB/@@download/ENCFF012KDB.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF717ROA bigBed narrowPeak optimal idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF084BUP 335535 ENCODE Processing Pipeline 5b809bea45b8ca2ebece1a02e3c3aa11 https://www.encodeproject.org/files/ENCFF717ROA/@@download/ENCFF717ROA.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF403QVA bigWig signal p-value ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF589BQJ 577387772 ENCODE Processing Pipeline 2b4e67a06c62bf1bbff6368a029fe713 https://www.encodeproject.org/files/ENCFF403QVA/@@download/ENCFF403QVA.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF902SVT bigWig fold change over control ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF589BQJ 451184413 ENCODE Processing Pipeline dda341338605327d70b24398e405df7e https://www.encodeproject.org/files/ENCFF902SVT/@@download/ENCFF902SVT.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF360CIL bigWig signal p-value ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF509WOE, ENCFF589BQJ, ENCFF879OQC 1025571704 ENCODE Processing Pipeline b35a8c7e19f3d89a709246efa41fe032 https://www.encodeproject.org/files/ENCFF360CIL/@@download/ENCFF360CIL.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF434JPE bigWig fold change over control ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF509WOE, ENCFF589BQJ, ENCFF879OQC 927943709 ENCODE Processing Pipeline cd6e23c3906b6efa918c7d7c62bde388 https://www.encodeproject.org/files/ENCFF434JPE/@@download/ENCFF434JPE.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF328DUA bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF509WOE, ENCFF879OQC 5231189 ENCODE Processing Pipeline 85f53ffb30f6faf16fe0caa5e9b060c9 https://www.encodeproject.org/files/ENCFF328DUA/@@download/ENCFF328DUA.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF567MRG bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF509WOE, ENCFF589BQJ, ENCFF879OQC 6495277 ENCODE Processing Pipeline 59919b41a010411d81de09be1a21bb21 https://www.encodeproject.org/files/ENCFF567MRG/@@download/ENCFF567MRG.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF067UPX bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF589BQJ 4686830 ENCODE Processing Pipeline 953df01f5694db5b646bd916b71b2a69 https://www.encodeproject.org/files/ENCFF067UPX/@@download/ENCFF067UPX.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF338DEO bigBed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF067UPX 10795431 ENCODE Processing Pipeline 78144ea56523732569d6bec778dd0723 https://www.encodeproject.org/files/ENCFF338DEO/@@download/ENCFF338DEO.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF978BSV bigBed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF328DUA 10982171 ENCODE Processing Pipeline 078b2114c261f1065119ae3c764d5621 https://www.encodeproject.org/files/ENCFF978BSV/@@download/ENCFF978BSV.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF827XLG bigBed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF567MRG 13338823 ENCODE Processing Pipeline 3dc25f90bfd6c12dda9c0c704108fd89 https://www.encodeproject.org/files/ENCFF827XLG/@@download/ENCFF827XLG.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF388JWW bed narrowPeak conservative idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF067UPX, ENCFF328DUA, ENCFF567MRG 134908 ENCODE Processing Pipeline 61a1306f21c856ee58d7c07ddfa403ec https://www.encodeproject.org/files/ENCFF388JWW/@@download/ENCFF388JWW.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF394ROW bigBed narrowPeak conservative idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF388JWW 293775 ENCODE Processing Pipeline afb896bece6f9a31338c516a69e042ca https://www.encodeproject.org/files/ENCFF394ROW/@@download/ENCFF394ROW.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF208TTI bigBed narrowPeak optimal idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF315YAF 335391 ENCODE Processing Pipeline 1aa196599732176723111821b9b405c3 https://www.encodeproject.org/files/ENCFF208TTI/@@download/ENCFF208TTI.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF315YAF bed narrowPeak optimal idr thresholded peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF067UPX, ENCFF328DUA, ENCFF567MRG 163107 ENCODE Processing Pipeline 00df6f6748c20e2ecc98bc3d078b2bd2 https://www.encodeproject.org/files/ENCFF315YAF/@@download/ENCFF315YAF.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF000NVG bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NVQ 693766087 Richard Myers, HAIB 42aa302e95ac2b21de910709447c584a https://www.encodeproject.org/files/ENCFF000NVG/@@download/ENCFF000NVG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000NVL bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NVV 701022640 Richard Myers, HAIB 515504ae91539f0f653c44a08f0578ee https://www.encodeproject.org/files/ENCFF000NVL/@@download/ENCFF000NVL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000NVN bigWig raw signal ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 10384665 Richard Myers, HAIB 48401e339b59d86b5b598caa3409e0ce https://www.encodeproject.org/files/ENCFF000NVN/@@download/ENCFF000NVN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000NVO bigWig raw signal ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 6105224 Richard Myers, HAIB f093d89a74862c938802730867234437 https://www.encodeproject.org/files/ENCFF000NVO/@@download/ENCFF000NVO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000NVQ fastq reads ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 615753404 Richard Myers, HAIB 2d5ca71a2ea105a422f38e65780fc4a6 https://www.encodeproject.org/files/ENCFF000NVQ/@@download/ENCFF000NVQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000NVV fastq reads ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 665129448 Richard Myers, HAIB fada711c920c8a8b43c5379ac8928d16 https://www.encodeproject.org/files/ENCFF000NVV/@@download/ENCFF000NVV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF001TWZ bed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 20025 Richard Myers, HAIB 2fb3ce61ce132662e53108db0e56d3e0 https://www.encodeproject.org/files/ENCFF001TWZ/@@download/ENCFF001TWZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001TXB bed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 55523 Richard Myers, HAIB 1aa9b3494015216bb74bcbbcd65e239b https://www.encodeproject.org/files/ENCFF001TXB/@@download/ENCFF001TXB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CGY bed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 82458 ENCODE Consortium Analysis Working Group 4d8a69baf039742337c0db70c72aad8a https://www.encodeproject.org/files/ENCFF002CGY/@@download/ENCFF002CGY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF799MEK bigBed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWZ 75656 ENCODE Consortium 8609b67105c6d9cf8ef1a5865c2cb90c https://www.encodeproject.org/files/ENCFF799MEK/@@download/ENCFF799MEK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF675NIE bigBed broadPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXB 142118 ENCODE Consortium 625c86af77e7c7e124cac8f550e3a0b3 https://www.encodeproject.org/files/ENCFF675NIE/@@download/ENCFF675NIE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF419POP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGY 194620 ENCODE Consortium e7aefd497650cc2617fdc7db7303bfb5 https://www.encodeproject.org/files/ENCFF419POP/@@download/ENCFF419POP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF230YPD bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF643CGH 876149398 ENCODE Processing Pipeline 395fb17dc8bf455adb3f7feb422ceddb https://www.encodeproject.org/files/ENCFF230YPD/@@download/ENCFF230YPD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF226OCU bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF643CGH 841190708 ENCODE Processing Pipeline 9b977b9f9d12d187e90d4b409d63afc9 https://www.encodeproject.org/files/ENCFF226OCU/@@download/ENCFF226OCU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF606IKC bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF643CGH 477560048 ENCODE Processing Pipeline 76ca7d31bf442632fba9a4800ca2d196 https://www.encodeproject.org/files/ENCFF606IKC/@@download/ENCFF606IKC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF135UPU bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF643CGH 440830031 ENCODE Processing Pipeline 1d700cce82f88d32b7a60031b335f388 https://www.encodeproject.org/files/ENCFF135UPU/@@download/ENCFF135UPU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF293YYY bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF807MUK 874247375 ENCODE Processing Pipeline 8039afffb1372ce31c4c50a803c1634d https://www.encodeproject.org/files/ENCFF293YYY/@@download/ENCFF293YYY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF952WXS bam unfiltered alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF807MUK 839173578 ENCODE Processing Pipeline 567909af6d32e871c562928854c9f8c0 https://www.encodeproject.org/files/ENCFF952WXS/@@download/ENCFF952WXS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF371ZBY bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF807MUK 438392999 ENCODE Processing Pipeline 286b0efc48b9f1f8e9ba3faa161e3e9d https://www.encodeproject.org/files/ENCFF371ZBY/@@download/ENCFF371ZBY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF477EHC bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF807MUK 474541605 ENCODE Processing Pipeline 6260e93f25984f6d00b70e88fac094a4 https://www.encodeproject.org/files/ENCFF477EHC/@@download/ENCFF477EHC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF401NGY bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF606IKC 416871046 ENCODE Processing Pipeline f65d5fd214b31296e2407ca7a06b131d https://www.encodeproject.org/files/ENCFF401NGY/@@download/ENCFF401NGY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF884UUR bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF135UPU, ENCFF488YYE 351212679 ENCODE Processing Pipeline b430a30f81508a6cd6e1b303bffbec93 https://www.encodeproject.org/files/ENCFF884UUR/@@download/ENCFF884UUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF705GGU bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF606IKC 296177227 ENCODE Processing Pipeline 4361967f3bae5d4d59ce364debe14791 https://www.encodeproject.org/files/ENCFF705GGU/@@download/ENCFF705GGU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF466MBM bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF135UPU, ENCFF488YYE, ENCFF606IKC 510269668 ENCODE Processing Pipeline ddcad0c19108b7324f96072907c956dc https://www.encodeproject.org/files/ENCFF466MBM/@@download/ENCFF466MBM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF988QZX bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF135UPU, ENCFF488YYE 262061172 ENCODE Processing Pipeline 78834e4f2b535217d662f8547624c9b8 https://www.encodeproject.org/files/ENCFF988QZX/@@download/ENCFF988QZX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF103EJS bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF135UPU, ENCFF488YYE, ENCFF606IKC 487982582 ENCODE Processing Pipeline aed1ac8bf75d2d61070b5bd69de1536a https://www.encodeproject.org/files/ENCFF103EJS/@@download/ENCFF103EJS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF765BOE bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF135UPU, ENCFF488YYE, ENCFF606IKC 4759637 ENCODE Processing Pipeline 45b156dea8f15ac1d9ec4988a60cdcb1 https://www.encodeproject.org/files/ENCFF765BOE/@@download/ENCFF765BOE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF668BWD bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF606IKC 4327453 ENCODE Processing Pipeline 0d9a6ac6aaf09b34b1e31d2fbffc7242 https://www.encodeproject.org/files/ENCFF668BWD/@@download/ENCFF668BWD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF816QSU bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF135UPU, ENCFF488YYE 3918961 ENCODE Processing Pipeline d893130237d5b63cc1eec40c6ab037f7 https://www.encodeproject.org/files/ENCFF816QSU/@@download/ENCFF816QSU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF954RBG bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF668BWD 10230974 ENCODE Processing Pipeline 9e92b20421922eb3b2d166e67b360963 https://www.encodeproject.org/files/ENCFF954RBG/@@download/ENCFF954RBG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF712LEE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF363SYB 393528 ENCODE Processing Pipeline 504864eff7cb035d326781eccc17b493 https://www.encodeproject.org/files/ENCFF712LEE/@@download/ENCFF712LEE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF024WRJ bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF816QSU 8123889 ENCODE Processing Pipeline 31a57d578047fb999b3805d8b4105643 https://www.encodeproject.org/files/ENCFF024WRJ/@@download/ENCFF024WRJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF365JTV bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF765BOE 10942901 ENCODE Processing Pipeline d1a9bc7dbf868ac74c28ac6ec2b7d130 https://www.encodeproject.org/files/ENCFF365JTV/@@download/ENCFF365JTV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF980VOD bed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF668BWD, ENCFF765BOE, ENCFF816QSU 225543 ENCODE Processing Pipeline 45dda8fed51a820cd2132d244827ce50 https://www.encodeproject.org/files/ENCFF980VOD/@@download/ENCFF980VOD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF363SYB bed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF668BWD, ENCFF765BOE, ENCFF816QSU 190019 ENCODE Processing Pipeline 815cd829e21e45c95935ed2673d016c3 https://www.encodeproject.org/files/ENCFF363SYB/@@download/ENCFF363SYB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF501GFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF980VOD 445937 ENCODE Processing Pipeline ecd50c625f16a7115f0c261a07d1e3fb https://www.encodeproject.org/files/ENCFF501GFQ/@@download/ENCFF501GFQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF834LXR bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 411420133 ENCODE Processing Pipeline 448459b52220ba31c84c4dfc8c05385e https://www.encodeproject.org/files/ENCFF834LXR/@@download/ENCFF834LXR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF923WCL bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 372193160 ENCODE Processing Pipeline 84b7ab6cb8add1ba1c076ed19b17d500 https://www.encodeproject.org/files/ENCFF923WCL/@@download/ENCFF923WCL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF785CYN bigWig signal p-value ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371ZBY, ENCFF477EHC, ENCFF963CVB 510807899 ENCODE Processing Pipeline 77fcba2a5821e9aea29e5b6264326b8f https://www.encodeproject.org/files/ENCFF785CYN/@@download/ENCFF785CYN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF419ZNP bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 295857791 ENCODE Processing Pipeline baa21f168252a5b44fbb85e264bac24a https://www.encodeproject.org/files/ENCFF419ZNP/@@download/ENCFF419ZNP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF778HRP bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 264207900 ENCODE Processing Pipeline 8c80c250c5b3676f7a2c9113a7d0baef https://www.encodeproject.org/files/ENCFF778HRP/@@download/ENCFF778HRP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF075PCI bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 4277244 ENCODE Processing Pipeline e42f904d05a8e549ceaf5946f90b146c https://www.encodeproject.org/files/ENCFF075PCI/@@download/ENCFF075PCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF292DYY bigWig fold change over control ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371ZBY, ENCFF477EHC, ENCFF963CVB 487745445 ENCODE Processing Pipeline e341ab75127d58429ba0a1544d18730e https://www.encodeproject.org/files/ENCFF292DYY/@@download/ENCFF292DYY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF570ZKC bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371ZBY, ENCFF477EHC, ENCFF963CVB 4764310 ENCODE Processing Pipeline 9008e249892a4a93cc7aea671123de79 https://www.encodeproject.org/files/ENCFF570ZKC/@@download/ENCFF570ZKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF836NUY bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF075PCI 10158524 ENCODE Processing Pipeline 123d6134752422785fc128e9c2809ec4 https://www.encodeproject.org/files/ENCFF836NUY/@@download/ENCFF836NUY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF565SXH bed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF075PCI, ENCFF570ZKC, ENCFF883DUG 190404 ENCODE Processing Pipeline f7bbc9921859f1a9056d4ef23f3d1ccd https://www.encodeproject.org/files/ENCFF565SXH/@@download/ENCFF565SXH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF332PGQ bed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF075PCI, ENCFF570ZKC, ENCFF883DUG 223403 ENCODE Processing Pipeline e5bebc61c5e4cd79bae1c050a283c860 https://www.encodeproject.org/files/ENCFF332PGQ/@@download/ENCFF332PGQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF871WRF bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF570ZKC 10943724 ENCODE Processing Pipeline 66c03e8ea1939f6beb0abbb1ef89572f https://www.encodeproject.org/files/ENCFF871WRF/@@download/ENCFF871WRF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF116FMX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF565SXH 392736 ENCODE Processing Pipeline 7e6cd80db08439c146cc83458422debc https://www.encodeproject.org/files/ENCFF116FMX/@@download/ENCFF116FMX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF975POW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF332PGQ 441036 ENCODE Processing Pipeline 8d250f4e82150862508458ce5d03a16e https://www.encodeproject.org/files/ENCFF975POW/@@download/ENCFF975POW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF883DUG bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 3918845 ENCODE Processing Pipeline 1c823522588c52a4e26b23b040b53980 https://www.encodeproject.org/files/ENCFF883DUG/@@download/ENCFF883DUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF933NIR bigBed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF883DUG 8112118 ENCODE Processing Pipeline fb86986a8746c0f1234f1855ba8e5827 https://www.encodeproject.org/files/ENCFF933NIR/@@download/ENCFF933NIR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000OLN bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OMD 1001354789 Richard Myers, HAIB 838933b344be2ee6f0f182d4b21884f4 https://www.encodeproject.org/files/ENCFF000OLN/@@download/ENCFF000OLN.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OLO bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OLZ 766388794 Richard Myers, HAIB 35fc901ec8e8d3333a5c20d10e7b2f51 https://www.encodeproject.org/files/ENCFF000OLO/@@download/ENCFF000OLO.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OLP bigBed broadPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAO 409430 Richard Myers, HAIB 5f0ecd881bbca29bd31d83750417a645 https://www.encodeproject.org/files/ENCFF000OLP/@@download/ENCFF000OLP.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OLQ bigBed broadPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAP 177872 Richard Myers, HAIB 8fcabf13f550ebbf93141abc127ee4a3 https://www.encodeproject.org/files/ENCFF000OLQ/@@download/ENCFF000OLQ.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OLT bigWig raw signal ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 20971671 Richard Myers, HAIB 3d8f3bd8f6d884714a3f450034eff33d https://www.encodeproject.org/files/ENCFF000OLT/@@download/ENCFF000OLT.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OLU bigWig raw signal ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 11788469 Richard Myers, HAIB ea793ccfc9eab8a774e469f8252fea90 https://www.encodeproject.org/files/ENCFF000OLU/@@download/ENCFF000OLU.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000OLZ fastq reads ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 786692980 Richard Myers, HAIB b455977b9f6b80fc6eaadf0cdc2c6041 https://www.encodeproject.org/files/ENCFF000OLZ/@@download/ENCFF000OLZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLW/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000OMD fastq reads ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1476513400 Richard Myers, HAIB 6801d78b9d69b69742991d3ff946e6bd https://www.encodeproject.org/files/ENCFF000OMD/@@download/ENCFF000OMD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLW/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001UAO bed broadPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 194087 Richard Myers, HAIB dfb29bdfc67ca59a148d6780f90c6dcf https://www.encodeproject.org/files/ENCFF001UAO/@@download/ENCFF001UAO.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001UAP bed broadPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 82920 Richard Myers, HAIB e496d54e4f7557297158e7387ce586cd https://www.encodeproject.org/files/ENCFF001UAP/@@download/ENCFF001UAP.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF002CIP bed narrowPeak optimal idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 210664 ENCODE Consortium Analysis Working Group c5eac5902cb7db64edab571c0e42a3b1 https://www.encodeproject.org/files/ENCFF002CIP/@@download/ENCFF002CIP.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF258DTS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIP 504659 ENCODE Consortium da1cf945bf9368d3f1f8d6ffb1d9be42 https://www.encodeproject.org/files/ENCFF258DTS/@@download/ENCFF258DTS.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF083XSA bam unfiltered alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLZ, ENCFF643CGH 1043947231 ENCODE Processing Pipeline 087a387bc13ff55981a9d45254919622 https://www.encodeproject.org/files/ENCFF083XSA/@@download/ENCFF083XSA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF114FFY bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLZ, ENCFF643CGH 618092597 ENCODE Processing Pipeline 2bd7ca27fb523e73bb9fdd398e4d3a3e https://www.encodeproject.org/files/ENCFF114FFY/@@download/ENCFF114FFY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF583AOA bam unfiltered alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMD, ENCFF643CGH 1775622220 ENCODE Processing Pipeline 698deeb4ba525d626e377ae61caecbba https://www.encodeproject.org/files/ENCFF583AOA/@@download/ENCFF583AOA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF863AIR bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMD, ENCFF643CGH 683030467 ENCODE Processing Pipeline 222a3c4c5b1136cde9817839a12c8a00 https://www.encodeproject.org/files/ENCFF863AIR/@@download/ENCFF863AIR.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF332YOH bam unfiltered alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLZ, ENCFF807MUK 1039060573 ENCODE Processing Pipeline 775ea03ccc45fe8c3a08043896d285b4 https://www.encodeproject.org/files/ENCFF332YOH/@@download/ENCFF332YOH.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF630WRV bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLZ, ENCFF807MUK 613313326 ENCODE Processing Pipeline a0d99c2438e6fb9da877f46b82fcc81b https://www.encodeproject.org/files/ENCFF630WRV/@@download/ENCFF630WRV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF643XHX bam unfiltered alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMD, ENCFF807MUK 1769956840 ENCODE Processing Pipeline eb685d35d51896009a35839acc79d12e https://www.encodeproject.org/files/ENCFF643XHX/@@download/ENCFF643XHX.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF338LXS bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMD, ENCFF807MUK 677454903 ENCODE Processing Pipeline 09e6803e6688e2bb8c410f0ecd0c3605 https://www.encodeproject.org/files/ENCFF338LXS/@@download/ENCFF338LXS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF832YYE bigWig signal p-value ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF114FFY, ENCFF860NWP 363504979 ENCODE Processing Pipeline 666f1ec134e700b3c474ac38071a1eaf https://www.encodeproject.org/files/ENCFF832YYE/@@download/ENCFF832YYE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF171VIK bigWig fold change over control ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF114FFY, ENCFF860NWP 241942290 ENCODE Processing Pipeline 2a0b24568e46942818e9dd848e0d6160 https://www.encodeproject.org/files/ENCFF171VIK/@@download/ENCFF171VIK.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF307XCZ bigWig fold change over control ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF114FFY, ENCFF860NWP, ENCFF863AIR 420941242 ENCODE Processing Pipeline 53430b92c982b556da08f8ebc5037012 https://www.encodeproject.org/files/ENCFF307XCZ/@@download/ENCFF307XCZ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF621KOX bigWig signal p-value ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF114FFY, ENCFF860NWP, ENCFF863AIR 289243798 ENCODE Processing Pipeline 184416b9c1c698fefccc6a6c1a30ecf2 https://www.encodeproject.org/files/ENCFF621KOX/@@download/ENCFF621KOX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF092SMY bigWig signal p-value ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF860NWP, ENCFF863AIR 290114454 ENCODE Processing Pipeline be2f2ba616f71f01e7d90c1f1a62b9a7 https://www.encodeproject.org/files/ENCFF092SMY/@@download/ENCFF092SMY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF359FWS bigWig fold change over control ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF860NWP, ENCFF863AIR 230510764 ENCODE Processing Pipeline 1e81715b6e11d1223f72e2a1c1489031 https://www.encodeproject.org/files/ENCFF359FWS/@@download/ENCFF359FWS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF376KOL bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF860NWP, ENCFF863AIR 4166065 ENCODE Processing Pipeline d766f08e912a9aefd9c97be2a95216c9 https://www.encodeproject.org/files/ENCFF376KOL/@@download/ENCFF376KOL.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF033PLJ bed narrowPeak optimal idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF269QOX, ENCFF376KOL, ENCFF419RSJ, ENCFF421VMO 215503 ENCODE Processing Pipeline 91532feedf706120ac26bf6e96f46c04 https://www.encodeproject.org/files/ENCFF033PLJ/@@download/ENCFF033PLJ.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF030FGV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF033PLJ 423773 ENCODE Processing Pipeline 69accd742d79cc7c0dd86fa6f75408bd https://www.encodeproject.org/files/ENCFF030FGV/@@download/ENCFF030FGV.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF269QOX bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF114FFY, ENCFF860NWP 4105186 ENCODE Processing Pipeline 117c95ebc3ba12143b636cc9add67db4 https://www.encodeproject.org/files/ENCFF269QOX/@@download/ENCFF269QOX.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF421VMO bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF114FFY, ENCFF860NWP, ENCFF863AIR 4653343 ENCODE Processing Pipeline 576bda3745fbcc92af3f838d618ecb38 https://www.encodeproject.org/files/ENCFF421VMO/@@download/ENCFF421VMO.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF529TAB bigBed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376KOL 10167815 ENCODE Processing Pipeline b8979ae2011c0a60ef2e1c4f69bfd134 https://www.encodeproject.org/files/ENCFF529TAB/@@download/ENCFF529TAB.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF834NTF bigBed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF269QOX 10243398 ENCODE Processing Pipeline 68183bc55a8474693abc6f30d8fa7ea7 https://www.encodeproject.org/files/ENCFF834NTF/@@download/ENCFF834NTF.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF428FML bigBed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF421VMO 10899946 ENCODE Processing Pipeline 22a04def61e5bf4a62376dad5d01b31f https://www.encodeproject.org/files/ENCFF428FML/@@download/ENCFF428FML.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF072YVF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF893SZU 389547 ENCODE Processing Pipeline e67a0749cc2987710239605b9635616a https://www.encodeproject.org/files/ENCFF072YVF/@@download/ENCFF072YVF.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF893SZU bed narrowPeak conservative idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF269QOX, ENCFF376KOL, ENCFF419RSJ, ENCFF421VMO 191372 ENCODE Processing Pipeline 4e67ae5bf152b7771bca2df0af5c39c0 https://www.encodeproject.org/files/ENCFF893SZU/@@download/ENCFF893SZU.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF929GRE bigWig signal p-value ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF338LXS, ENCFF671VNQ 293790010 ENCODE Processing Pipeline 4ef14ace1f315fb24f339d2bf2cc2eb9 https://www.encodeproject.org/files/ENCFF929GRE/@@download/ENCFF929GRE.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF938YXT bigWig fold change over control ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF338LXS, ENCFF671VNQ 236922914 ENCODE Processing Pipeline 43b258999eeee069992b570ee50af0f6 https://www.encodeproject.org/files/ENCFF938YXT/@@download/ENCFF938YXT.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF475JFW bigWig signal p-value ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF338LXS, ENCFF630WRV, ENCFF671VNQ 287303921 ENCODE Processing Pipeline 5d481ba1472e4924c14943670c1e83dc https://www.encodeproject.org/files/ENCFF475JFW/@@download/ENCFF475JFW.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF334BNS bigWig signal p-value ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF630WRV, ENCFF671VNQ 283730121 ENCODE Processing Pipeline 0b88415065e2076f5f712e9b5ffb249c https://www.encodeproject.org/files/ENCFF334BNS/@@download/ENCFF334BNS.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF951AVC bigWig fold change over control ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF630WRV, ENCFF671VNQ 239583671 ENCODE Processing Pipeline 9cdc22d6b7954febe98dd255689507f2 https://www.encodeproject.org/files/ENCFF951AVC/@@download/ENCFF951AVC.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF069EXL bigWig fold change over control ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF338LXS, ENCFF630WRV, ENCFF671VNQ 419451303 ENCODE Processing Pipeline 6e13f826360bd9756bf5a4ceb9df15c2 https://www.encodeproject.org/files/ENCFF069EXL/@@download/ENCFF069EXL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF556WPW bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF630WRV, ENCFF671VNQ 4086760 ENCODE Processing Pipeline 38325030d7c783e7c3e119b604237087 https://www.encodeproject.org/files/ENCFF556WPW/@@download/ENCFF556WPW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF452NTV bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF338LXS, ENCFF671VNQ 4169085 ENCODE Processing Pipeline ef4d0c765acd3139e669be500c3ce54d https://www.encodeproject.org/files/ENCFF452NTV/@@download/ENCFF452NTV.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF365FTH bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF338LXS, ENCFF630WRV, ENCFF671VNQ 4688654 ENCODE Processing Pipeline bf25bb514365b69eb163b7529bed73d3 https://www.encodeproject.org/files/ENCFF365FTH/@@download/ENCFF365FTH.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF713IVN bed narrowPeak optimal idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF365FTH, ENCFF452NTV, ENCFF556WPW 210518 ENCODE Processing Pipeline 69d8b7fd6e1831171aa71f7a143393a4 https://www.encodeproject.org/files/ENCFF713IVN/@@download/ENCFF713IVN.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF095LPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF713IVN 417124 ENCODE Processing Pipeline e61fb5577a0dd80294ed2649d85936ec https://www.encodeproject.org/files/ENCFF095LPQ/@@download/ENCFF095LPQ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF120CFC bigBed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF556WPW 10222571 ENCODE Processing Pipeline 7986b15f9e553056d367d9049fff2eda https://www.encodeproject.org/files/ENCFF120CFC/@@download/ENCFF120CFC.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF195CAL bigBed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF452NTV 10247485 ENCODE Processing Pipeline 4c6c3a5f0cb1aa3386e89d655145672d https://www.encodeproject.org/files/ENCFF195CAL/@@download/ENCFF195CAL.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF165JBG bed narrowPeak conservative idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF365FTH, ENCFF452NTV, ENCFF556WPW 185760 ENCODE Processing Pipeline e7a8f923049b8012116d0ba990431fb9 https://www.encodeproject.org/files/ENCFF165JBG/@@download/ENCFF165JBG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF815PYP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF165JBG 381906 ENCODE Processing Pipeline 56197145ab2aa0a41bf24e3c8f0d1e35 https://www.encodeproject.org/files/ENCFF815PYP/@@download/ENCFF815PYP.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF027SEW bigBed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF365FTH 10913129 ENCODE Processing Pipeline 1b9aeaa63846d1283296da3afa42cf6b https://www.encodeproject.org/files/ENCFF027SEW/@@download/ENCFF027SEW.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF423UJN bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF807MUK 1242920712 ENCODE Processing Pipeline 73daf0d415c7806f49464289d675618c https://www.encodeproject.org/files/ENCFF423UJN/@@download/ENCFF423UJN.bam hg19 released borderline replicate concordance ENCFF414RUN bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF807MUK 2100346637 ENCODE Processing Pipeline 6dac7ebd1cf3b16b50e7d384c29aeac5 https://www.encodeproject.org/files/ENCFF414RUN/@@download/ENCFF414RUN.bam hg19 released borderline replicate concordance ENCFF204SCC fastq reads ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 1 50 single-ended 1928647239 Richard Myers, HAIB 958fd5ff95d60799f33afd6e29ff50b5 SRA:SRR5331441 https://www.encodeproject.org/files/ENCFF204SCC/@@download/ENCFF204SCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF225JIA/ released borderline replicate concordance ENCFF583BRM fastq reads ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 1 50 single-ended 1141399880 Richard Myers, HAIB 40f5d8a369a6f215217d9bc1cb9d85eb SRA:SRR5331440 https://www.encodeproject.org/files/ENCFF583BRM/@@download/ENCFF583BRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF090NGH/ released borderline replicate concordance ENCFF563WQV bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF807MUK 896436280 ENCODE Processing Pipeline c863e3c9a4b93c39d6f7b7955df320d7 https://www.encodeproject.org/files/ENCFF563WQV/@@download/ENCFF563WQV.bam hg19 released borderline replicate concordance ENCFF534KZJ bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF807MUK 1529926606 ENCODE Processing Pipeline 6cccf27645b6e4e60e6abe2e7729c540 https://www.encodeproject.org/files/ENCFF534KZJ/@@download/ENCFF534KZJ.bam hg19 released borderline replicate concordance ENCFF811SCS bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 639684025 ENCODE Processing Pipeline 7fc27715a41dfd315c08290ac26790eb https://www.encodeproject.org/files/ENCFF811SCS/@@download/ENCFF811SCS.bigWig hg19 released borderline replicate concordance ENCFF095UKZ bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF445QVI, ENCFF534KZJ, ENCFF563WQV, ENCFF927EKA 1057410454 ENCODE Processing Pipeline acefa07fc98201284e7e07af365cf5b3 https://www.encodeproject.org/files/ENCFF095UKZ/@@download/ENCFF095UKZ.bigWig hg19 released borderline replicate concordance ENCFF347VWB bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 788447734 ENCODE Processing Pipeline 99037c0a7a22abc5b996d9d70c6deca2 https://www.encodeproject.org/files/ENCFF347VWB/@@download/ENCFF347VWB.bigWig hg19 released borderline replicate concordance ENCFF846TRX bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 6731053 ENCODE Processing Pipeline 7268d5254a0b1fb2e2af59a0bf851ec8 https://www.encodeproject.org/files/ENCFF846TRX/@@download/ENCFF846TRX.bed.gz hg19 released borderline replicate concordance ENCFF097ZFO bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 853905606 ENCODE Processing Pipeline 4cb7e7fb738337fa9a9b84d1d5c12e96 https://www.encodeproject.org/files/ENCFF097ZFO/@@download/ENCFF097ZFO.bigWig hg19 released borderline replicate concordance ENCFF493ZGH bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 6278467 ENCODE Processing Pipeline c3e6b8a485e8bd298fa9c2ae32c9ffe3 https://www.encodeproject.org/files/ENCFF493ZGH/@@download/ENCFF493ZGH.bed.gz hg19 released borderline replicate concordance ENCFF598QVS bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 573340837 ENCODE Processing Pipeline 4e51fdc7ece09c54827ebe4ce4863b0f https://www.encodeproject.org/files/ENCFF598QVS/@@download/ENCFF598QVS.bigWig hg19 released borderline replicate concordance ENCFF546BYE bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF445QVI, ENCFF534KZJ, ENCFF563WQV, ENCFF927EKA 1082344054 ENCODE Processing Pipeline 89964c6e3e19460471339dd70a41a62e https://www.encodeproject.org/files/ENCFF546BYE/@@download/ENCFF546BYE.bigWig hg19 released borderline replicate concordance ENCFF196ECC bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF445QVI, ENCFF534KZJ, ENCFF563WQV, ENCFF927EKA 7067949 ENCODE Processing Pipeline 84642ffd46d3d8d8d11695770f278b13 https://www.encodeproject.org/files/ENCFF196ECC/@@download/ENCFF196ECC.bed.gz hg19 released borderline replicate concordance ENCFF837ZXT bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF846TRX 13274009 ENCODE Processing Pipeline 5ea8af022cb66b9dc47f178cd1218817 https://www.encodeproject.org/files/ENCFF837ZXT/@@download/ENCFF837ZXT.bigBed hg19 released borderline replicate concordance ENCFF736FXF bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF493ZGH 13338058 ENCODE Processing Pipeline 4f6faf37cd24513670c7d25ef99ddb37 https://www.encodeproject.org/files/ENCFF736FXF/@@download/ENCFF736FXF.bigBed hg19 released borderline replicate concordance ENCFF582YLE bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF196ECC 13223049 ENCODE Processing Pipeline 32d68f751a1fe471a791a8ee6ef36195 https://www.encodeproject.org/files/ENCFF582YLE/@@download/ENCFF582YLE.bigBed hg19 released borderline replicate concordance ENCFF147IJZ bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF643CGH 1247194765 ENCODE Processing Pipeline e24f173d3d4293c90b32fe8e81445953 https://www.encodeproject.org/files/ENCFF147IJZ/@@download/ENCFF147IJZ.bam GRCh38 released borderline replicate concordance ENCFF893PGF bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF643CGH 899220998 ENCODE Processing Pipeline 9f88985aa7cc4b73b561cc827078b829 https://www.encodeproject.org/files/ENCFF893PGF/@@download/ENCFF893PGF.bam GRCh38 released borderline replicate concordance ENCFF287MOV bam unfiltered alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF643CGH 2104045401 ENCODE Processing Pipeline e364ac2afffd3112452e3db0b2976a57 https://www.encodeproject.org/files/ENCFF287MOV/@@download/ENCFF287MOV.bam GRCh38 released borderline replicate concordance ENCFF641VCR bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF643CGH 1535357296 ENCODE Processing Pipeline 23870d173b9512c98100475d5f80a89b https://www.encodeproject.org/files/ENCFF641VCR/@@download/ENCFF641VCR.bam GRCh38 released borderline replicate concordance ENCFF877CEC bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR 823044296 ENCODE Processing Pipeline d74898821bec70cdd66cf73ec222f13f https://www.encodeproject.org/files/ENCFF877CEC/@@download/ENCFF877CEC.bigWig GRCh38 released borderline replicate concordance ENCFF437QUC bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF183AOM, ENCFF290EGQ, ENCFF893PGF 714541921 ENCODE Processing Pipeline f657989b230373b871ec963074530e5a https://www.encodeproject.org/files/ENCFF437QUC/@@download/ENCFF437QUC.bigWig GRCh38 released borderline replicate concordance ENCFF302DMZ bigWig signal p-value ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR, ENCFF893PGF 1050242539 ENCODE Processing Pipeline 780efed8db1db2845e8a223110f49275 https://www.encodeproject.org/files/ENCFF302DMZ/@@download/ENCFF302DMZ.bigWig GRCh38 released borderline replicate concordance ENCFF734YAE bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR 776137963 ENCODE Processing Pipeline 50049f5bb05078588dfc023b87e19d5f https://www.encodeproject.org/files/ENCFF734YAE/@@download/ENCFF734YAE.bigWig GRCh38 released borderline replicate concordance ENCFF264JDM bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF183AOM, ENCFF290EGQ, ENCFF893PGF 587488136 ENCODE Processing Pipeline f854ea0c16dd3c7ba00fc934d081ce01 https://www.encodeproject.org/files/ENCFF264JDM/@@download/ENCFF264JDM.bigWig GRCh38 released borderline replicate concordance ENCFF794XLB bigWig fold change over control ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR, ENCFF893PGF 1072582154 ENCODE Processing Pipeline a92b225fa9c4f28cde78a66348932c8b https://www.encodeproject.org/files/ENCFF794XLB/@@download/ENCFF794XLB.bigWig GRCh38 released borderline replicate concordance ENCFF965CZF bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR, ENCFF893PGF 6939696 ENCODE Processing Pipeline 0d512286c7257a791cc463627d578bb8 https://www.encodeproject.org/files/ENCFF965CZF/@@download/ENCFF965CZF.bed.gz GRCh38 released borderline replicate concordance ENCFF990NXB bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF965CZF 13208487 ENCODE Processing Pipeline 26003198a7b20f65153d59d08dcdc634 https://www.encodeproject.org/files/ENCFF990NXB/@@download/ENCFF990NXB.bigBed GRCh38 released borderline replicate concordance ENCFF775QKY bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF183AOM, ENCFF290EGQ, ENCFF641VCR 6590975 ENCODE Processing Pipeline f204f96d49b1dd6509b93563af2d4151 https://www.encodeproject.org/files/ENCFF775QKY/@@download/ENCFF775QKY.bed.gz GRCh38 released borderline replicate concordance ENCFF817EFX bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF775QKY 13254192 ENCODE Processing Pipeline eaa8dd3d410f60bc607dd7c2fe71641d https://www.encodeproject.org/files/ENCFF817EFX/@@download/ENCFF817EFX.bigBed GRCh38 released borderline replicate concordance ENCFF907JXH bed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF775QKY, ENCFF799PZN, ENCFF965CZF 175819 ENCODE Processing Pipeline d3ed189a54e6aa34f5cf94145c517edc https://www.encodeproject.org/files/ENCFF907JXH/@@download/ENCFF907JXH.bed.gz GRCh38 released borderline replicate concordance ENCFF799PZN bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF183AOM, ENCFF290EGQ, ENCFF893PGF 6050631 ENCODE Processing Pipeline 016d9a42e5258f51490e7000af1c9b39 https://www.encodeproject.org/files/ENCFF799PZN/@@download/ENCFF799PZN.bed.gz GRCh38 released borderline replicate concordance ENCFF418ORB bigBed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF799PZN 13350675 ENCODE Processing Pipeline 6c927398f2adec261d5ad07676d3d787 https://www.encodeproject.org/files/ENCFF418ORB/@@download/ENCFF418ORB.bigBed GRCh38 released borderline replicate concordance ENCFF125JVH bigBed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF907JXH 407064 ENCODE Processing Pipeline 8cac6cd47e344ecb97a41d959602dc93 https://www.encodeproject.org/files/ENCFF125JVH/@@download/ENCFF125JVH.bigBed GRCh38 released borderline replicate concordance ENCFF630FLK bed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF775QKY, ENCFF799PZN, ENCFF965CZF 264396 ENCODE Processing Pipeline 1307e25bd4c8b822ca0dca5bf395edec https://www.encodeproject.org/files/ENCFF630FLK/@@download/ENCFF630FLK.bed.gz GRCh38 released borderline replicate concordance ENCFF688FED bigBed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF630FLK 551743 ENCODE Processing Pipeline 6fa137356bf686d6dabfa91fd6ab94a0 https://www.encodeproject.org/files/ENCFF688FED/@@download/ENCFF688FED.bigBed GRCh38 released borderline replicate concordance ENCFF613ZJY bigBed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF266JBU 305218 ENCODE Processing Pipeline 6654f75130692c0513bce6ccd57a4447 https://www.encodeproject.org/files/ENCFF613ZJY/@@download/ENCFF613ZJY.bigBed hg19 released borderline replicate concordance ENCFF266JBU bed narrowPeak conservative idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF001TDO, ENCFF196ECC, ENCFF493ZGH, ENCFF846TRX 148381 ENCODE Processing Pipeline 75f8120aab0d90b0c8f68f250e263996 https://www.encodeproject.org/files/ENCFF266JBU/@@download/ENCFF266JBU.bed.gz hg19 released borderline replicate concordance ENCFF845VWY bigBed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF123WEZ 484391 ENCODE Processing Pipeline 96e9c0dd8e3fed72c1b21d4cae7c5394 https://www.encodeproject.org/files/ENCFF845VWY/@@download/ENCFF845VWY.bigBed hg19 released borderline replicate concordance ENCFF123WEZ bed narrowPeak optimal idr thresholded peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1, 2 ENCFF001TDO, ENCFF196ECC, ENCFF493ZGH, ENCFF846TRX 217520 ENCODE Processing Pipeline 6c56ef3935736be7731a0100ba97731f https://www.encodeproject.org/files/ENCFF123WEZ/@@download/ENCFF123WEZ.bed.gz hg19 released borderline replicate concordance ENCFF000PIO bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PJC 1762907343 Richard Myers, HAIB dc042898f2ded867b467881739c5bef8 https://www.encodeproject.org/files/ENCFF000PIO/@@download/ENCFF000PIO.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PIP bigBed broadPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UGA 248969 Richard Myers, HAIB 080c19c8e8604da37fed7d24feb0f3dc https://www.encodeproject.org/files/ENCFF000PIP/@@download/ENCFF000PIP.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PIQ bigBed broadPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UGB 225690 Richard Myers, HAIB 5cf2fddb87460c41a0a41f6634d6a5e0 https://www.encodeproject.org/files/ENCFF000PIQ/@@download/ENCFF000PIQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PIR bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PJF 2332834381 Richard Myers, HAIB 1b8f1149a1fbcd5fc6476aa95993a27b https://www.encodeproject.org/files/ENCFF000PIR/@@download/ENCFF000PIR.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PIS bigWig raw signal ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 52007953 Richard Myers, HAIB ae2b6a5c89815932e5d79b14710a4b50 https://www.encodeproject.org/files/ENCFF000PIS/@@download/ENCFF000PIS.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PIU bigWig raw signal ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 52083755 Richard Myers, HAIB 9ad81938baa5fcbec09e6a0728d9e499 https://www.encodeproject.org/files/ENCFF000PIU/@@download/ENCFF000PIU.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PJC fastq reads ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 962703658 Richard Myers, HAIB 4c86baa0cb43bd3615e1d2c59729062b https://www.encodeproject.org/files/ENCFF000PJC/@@download/ENCFF000PJC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POQ/ released low read length, low read depth biological replicates with identical biosample ENCFF000PJF fastq reads ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 2118990141 Richard Myers, HAIB 046bb7fb3ebc2f0c8d5a18cf882b377e https://www.encodeproject.org/files/ENCFF000PJF/@@download/ENCFF000PJF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POO/ released low read length, low read depth biological replicates with identical biosample ENCFF001UGA bed broadPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 130986 Richard Myers, HAIB f488c2f0030cd5762a9ba706af598c14 https://www.encodeproject.org/files/ENCFF001UGA/@@download/ENCFF001UGA.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UGB bed broadPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 112610 Richard Myers, HAIB 42f942c387c3dff74c055f2e64739a43 https://www.encodeproject.org/files/ENCFF001UGB/@@download/ENCFF001UGB.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CKL bed narrowPeak optimal idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 208155 ENCODE Consortium Analysis Working Group b71d28c42d7022e7d52efc24a27e5ce7 https://www.encodeproject.org/files/ENCFF002CKL/@@download/ENCFF002CKL.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF042DEE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKL 447146 ENCODE Consortium 79d514d318cd9d7d38cd9ded4a2f33e0 https://www.encodeproject.org/files/ENCFF042DEE/@@download/ENCFF042DEE.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF707FTP bam unfiltered alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJC, ENCFF643CGH 1190001470 ENCODE Processing Pipeline ffd91292af962de2471800f24b13f5bc https://www.encodeproject.org/files/ENCFF707FTP/@@download/ENCFF707FTP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF070WEO bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJC, ENCFF643CGH 345537846 ENCODE Processing Pipeline 91415bb98d743d01a7703d6150e020c9 https://www.encodeproject.org/files/ENCFF070WEO/@@download/ENCFF070WEO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF806BHF bam unfiltered alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJF, ENCFF643CGH 2496312132 ENCODE Processing Pipeline 361d0517e4b881db26469720d9be1746 https://www.encodeproject.org/files/ENCFF806BHF/@@download/ENCFF806BHF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF496HGU bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJF, ENCFF643CGH 597246951 ENCODE Processing Pipeline c1e2a6a98713c7a1defe5794ef4da899 https://www.encodeproject.org/files/ENCFF496HGU/@@download/ENCFF496HGU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF500QLL bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJC, ENCFF807MUK 345759427 ENCODE Processing Pipeline 1f31bdeaed8eef8565be54399b123754 https://www.encodeproject.org/files/ENCFF500QLL/@@download/ENCFF500QLL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF487QUK bam unfiltered alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJC, ENCFF807MUK 1188352037 ENCODE Processing Pipeline 2383a2286f92da5b4533c79ea1501b9e https://www.encodeproject.org/files/ENCFF487QUK/@@download/ENCFF487QUK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF446CBW bam unfiltered alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJF, ENCFF807MUK 2493841973 ENCODE Processing Pipeline 68f8acddf9f1203cfd5787f5431d69a6 https://www.encodeproject.org/files/ENCFF446CBW/@@download/ENCFF446CBW.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF802GPW bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJF, ENCFF807MUK 597549122 ENCODE Processing Pipeline 2e933005746da9b5994769479eab26a1 https://www.encodeproject.org/files/ENCFF802GPW/@@download/ENCFF802GPW.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF687KKZ bigWig signal p-value ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF070WEO, ENCFF249PQD, ENCFF741TQN 422892433 ENCODE Processing Pipeline bd3a1e09824b763e5e835ae98813a6df https://www.encodeproject.org/files/ENCFF687KKZ/@@download/ENCFF687KKZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF269RWR bigWig signal p-value ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF070WEO, ENCFF249PQD, ENCFF496HGU, ENCFF741TQN 665111489 ENCODE Processing Pipeline 1f11badb8f78b494c80c623c92a030b2 https://www.encodeproject.org/files/ENCFF269RWR/@@download/ENCFF269RWR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF232JOW bigWig signal p-value ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF496HGU, ENCFF741TQN 482123047 ENCODE Processing Pipeline 3764e4631fced3e95a0e25b4f52501f9 https://www.encodeproject.org/files/ENCFF232JOW/@@download/ENCFF232JOW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF200UZN bigWig fold change over control ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF496HGU, ENCFF741TQN 353833436 ENCODE Processing Pipeline 709e820bd872ce82a1a1cb211eb1b288 https://www.encodeproject.org/files/ENCFF200UZN/@@download/ENCFF200UZN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF699HQQ bigWig fold change over control ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF070WEO, ENCFF249PQD, ENCFF741TQN 268481363 ENCODE Processing Pipeline 6f20afa78b52b0c66df492b4dfdb95d3 https://www.encodeproject.org/files/ENCFF699HQQ/@@download/ENCFF699HQQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF351OIU bigWig fold change over control ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF070WEO, ENCFF249PQD, ENCFF496HGU, ENCFF741TQN 503706192 ENCODE Processing Pipeline 6af8df541b8d828259b5a6fb19d1ed6f https://www.encodeproject.org/files/ENCFF351OIU/@@download/ENCFF351OIU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF691XJL bigBed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305DJN 10798735 ENCODE Processing Pipeline 816c84c75a168f6de92f09b61d610134 https://www.encodeproject.org/files/ENCFF691XJL/@@download/ENCFF691XJL.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF305DJN bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF496HGU, ENCFF741TQN 4802730 ENCODE Processing Pipeline 76fcaa4f32e603469f997676d65eb23f https://www.encodeproject.org/files/ENCFF305DJN/@@download/ENCFF305DJN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF694LYF bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF070WEO, ENCFF249PQD, ENCFF741TQN 3950272 ENCODE Processing Pipeline d3e7f7a94108815b8c5bce11eee21979 https://www.encodeproject.org/files/ENCFF694LYF/@@download/ENCFF694LYF.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF059PYR bigBed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF694LYF 8989522 ENCODE Processing Pipeline 4f6823735a43b368705c59ec1a3a68a5 https://www.encodeproject.org/files/ENCFF059PYR/@@download/ENCFF059PYR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF883BHO bed narrowPeak conservative idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305DJN, ENCFF419RSJ, ENCFF694LYF, ENCFF963BWF 135748 ENCODE Processing Pipeline 3ac9a810c64ed11cd39ce1c4442ca1e0 https://www.encodeproject.org/files/ENCFF883BHO/@@download/ENCFF883BHO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF963BWF bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF070WEO, ENCFF249PQD, ENCFF496HGU, ENCFF741TQN 5556149 ENCODE Processing Pipeline 2e9623cd182e0c103e39ea757036003d https://www.encodeproject.org/files/ENCFF963BWF/@@download/ENCFF963BWF.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF030SBW bigBed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF963BWF 11200043 ENCODE Processing Pipeline a2927c4f84c507525973ef37ea291737 https://www.encodeproject.org/files/ENCFF030SBW/@@download/ENCFF030SBW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF054HJA bed narrowPeak optimal idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305DJN, ENCFF419RSJ, ENCFF694LYF, ENCFF963BWF 146066 ENCODE Processing Pipeline fb5ccf666892c59c23ef1b40334b6265 https://www.encodeproject.org/files/ENCFF054HJA/@@download/ENCFF054HJA.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF769JOF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054HJA 356188 ENCODE Processing Pipeline 92b4bfa6ad4e2f0791778fe052dabc01 https://www.encodeproject.org/files/ENCFF769JOF/@@download/ENCFF769JOF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF521VPS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF883BHO 338657 ENCODE Processing Pipeline 2fb3222c7ad2bcf680530a3c36674699 https://www.encodeproject.org/files/ENCFF521VPS/@@download/ENCFF521VPS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF794VLA bigWig fold change over control ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF802GPW 354594581 ENCODE Processing Pipeline cc1dd7094ad37769977aa48bceaf0c94 https://www.encodeproject.org/files/ENCFF794VLA/@@download/ENCFF794VLA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF216FJB bigWig signal p-value ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF802GPW 564805186 ENCODE Processing Pipeline 415e08ca3b6e266180c9b2f4116c489c https://www.encodeproject.org/files/ENCFF216FJB/@@download/ENCFF216FJB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF193BEL bigWig signal p-value ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV 435449751 ENCODE Processing Pipeline adfbf307c65cf14a497d8b82abd33abe https://www.encodeproject.org/files/ENCFF193BEL/@@download/ENCFF193BEL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF167ALY bigWig fold change over control ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV 267780772 ENCODE Processing Pipeline d8cea3686b89f587b90e280d588f73fe https://www.encodeproject.org/files/ENCFF167ALY/@@download/ENCFF167ALY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF758OKB bigWig signal p-value ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV, ENCFF802GPW 544895528 ENCODE Processing Pipeline 0c18111162c67d4cebd71960e2e1c0f7 https://www.encodeproject.org/files/ENCFF758OKB/@@download/ENCFF758OKB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF176POX bigWig fold change over control ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV, ENCFF802GPW 498765164 ENCODE Processing Pipeline 6c92785074c249773aa701271769ab5d https://www.encodeproject.org/files/ENCFF176POX/@@download/ENCFF176POX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF348PXE bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF802GPW 4800977 ENCODE Processing Pipeline bb1d33e242331a08ebb45e75268793b4 https://www.encodeproject.org/files/ENCFF348PXE/@@download/ENCFF348PXE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF451PTD bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV 3950534 ENCODE Processing Pipeline a1b98e61822ac785726b5b9bffafc2a8 https://www.encodeproject.org/files/ENCFF451PTD/@@download/ENCFF451PTD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF002OPR bigBed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF348PXE 10791267 ENCODE Processing Pipeline 59615500709d120fc0ddb93d63f9bbc4 https://www.encodeproject.org/files/ENCFF002OPR/@@download/ENCFF002OPR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF748FWU bigBed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF539SWX 11195225 ENCODE Processing Pipeline dd948bf50ce11f7e27d2725bc45744f6 https://www.encodeproject.org/files/ENCFF748FWU/@@download/ENCFF748FWU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF383WAL bed narrowPeak conservative idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF348PXE, ENCFF451PTD, ENCFF539SWX 135555 ENCODE Processing Pipeline 154781677df4a493f9aaa256fa827ad4 https://www.encodeproject.org/files/ENCFF383WAL/@@download/ENCFF383WAL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF539SWX bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV, ENCFF802GPW 5552947 ENCODE Processing Pipeline 68425a359c275386df877f669f1e7c92 https://www.encodeproject.org/files/ENCFF539SWX/@@download/ENCFF539SWX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF798SBA bigBed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF451PTD 8986028 ENCODE Processing Pipeline ea664a7656b245447722086df1c3b5ea https://www.encodeproject.org/files/ENCFF798SBA/@@download/ENCFF798SBA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF599QEQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF065EPE 354782 ENCODE Processing Pipeline 981caef261a365b6a351e1a12091dac3 https://www.encodeproject.org/files/ENCFF599QEQ/@@download/ENCFF599QEQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF065EPE bed narrowPeak optimal idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF348PXE, ENCFF451PTD, ENCFF539SWX 145608 ENCODE Processing Pipeline fb8bebc60129799408d9866b62709e23 https://www.encodeproject.org/files/ENCFF065EPE/@@download/ENCFF065EPE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF645WYD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF383WAL 337908 ENCODE Processing Pipeline ab344746f9b891868a74471c9eae88e9 https://www.encodeproject.org/files/ENCFF645WYD/@@download/ENCFF645WYD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000XPX bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 577251666 Michael Snyder, Stanford a52ea70f55f107cc51aa4e246bb13e11 https://www.encodeproject.org/files/ENCFF000XPX/@@download/ENCFF000XPX.bam hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XPY bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VJY 178492 Michael Snyder, Stanford 93578b053d5d976db97fa20540c1b7d7 https://www.encodeproject.org/files/ENCFF000XPY/@@download/ENCFF000XPY.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPZ fastq reads ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1075222729 Michael Snyder, Stanford bdebc0d7726833e563d213c015fba5ca https://www.encodeproject.org/files/ENCFF000XPZ/@@download/ENCFF000XPZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQB fastq reads ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1298848774 Michael Snyder, Stanford c846f8bf5b8dac3f62e321f4ae3507ae https://www.encodeproject.org/files/ENCFF000XQB/@@download/ENCFF000XQB.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQD bigWig signal ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 460122781 Michael Snyder, Stanford e19c50b79a1c43a69a6e23df941f07d6 https://www.encodeproject.org/files/ENCFF000XQD/@@download/ENCFF000XQD.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XQE bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 679677916 Michael Snyder, Stanford d8c8fd4ef51bc1c27e211ad50622d872 https://www.encodeproject.org/files/ENCFF000XQE/@@download/ENCFF000XQE.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VJY bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 63273 Michael Snyder, Stanford 7fc6b0c4ac4ddb116252b0d9ca636852 https://www.encodeproject.org/files/ENCFF001VJY/@@download/ENCFF001VJY.bed.gz hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF159EGA bam unfiltered alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XPZ, ENCFF643CGH 1269339954 ENCODE Processing Pipeline 8dc54835c63b68cbf71143c19b68a5a1 https://www.encodeproject.org/files/ENCFF159EGA/@@download/ENCFF159EGA.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF186OVM bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XPZ, ENCFF643CGH 908104773 ENCODE Processing Pipeline 550719ed8f57291e0e031cb313ea4f47 https://www.encodeproject.org/files/ENCFF186OVM/@@download/ENCFF186OVM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF227ZZW bam unfiltered alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQB, ENCFF643CGH 1485705738 ENCODE Processing Pipeline afcf253bf90b7d6fb4bbf8a159775978 https://www.encodeproject.org/files/ENCFF227ZZW/@@download/ENCFF227ZZW.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF799JNH bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQB, ENCFF643CGH 1066076897 ENCODE Processing Pipeline 51bc99f45496633e1f6f9444ea045d2b https://www.encodeproject.org/files/ENCFF799JNH/@@download/ENCFF799JNH.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF602YML bam unfiltered alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XPZ, ENCFF807MUK 1261973194 ENCODE Processing Pipeline 44030ee532a7c0f1eaa477aad4fbde78 https://www.encodeproject.org/files/ENCFF602YML/@@download/ENCFF602YML.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF560JLB bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XPZ, ENCFF807MUK 908383857 ENCODE Processing Pipeline 31ee295e8701b9621ccc4a8cffd49d51 https://www.encodeproject.org/files/ENCFF560JLB/@@download/ENCFF560JLB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF668MHY bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQB, ENCFF807MUK 1066499791 ENCODE Processing Pipeline 440d623ace309f1875957530f95a0ae1 https://www.encodeproject.org/files/ENCFF668MHY/@@download/ENCFF668MHY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF411MQR bam unfiltered alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQB, ENCFF807MUK 1477947505 ENCODE Processing Pipeline d052deff42a0e6fc3205ef5a4eee4248 https://www.encodeproject.org/files/ENCFF411MQR/@@download/ENCFF411MQR.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF797XNP bigWig signal p-value ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF186OVM 554872519 ENCODE Processing Pipeline 65b4896738c50d51ac380756c7da3aa9 https://www.encodeproject.org/files/ENCFF797XNP/@@download/ENCFF797XNP.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF042ZWK bigWig signal p-value ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF799JNH 606451149 ENCODE Processing Pipeline 5d35f311d033a1246fc92f2685ad5ef1 https://www.encodeproject.org/files/ENCFF042ZWK/@@download/ENCFF042ZWK.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF557OEK bigWig signal p-value ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF186OVM, ENCFF799JNH 697652334 ENCODE Processing Pipeline 541ed7bc57fcaf11184c2018cdf6c9f1 https://www.encodeproject.org/files/ENCFF557OEK/@@download/ENCFF557OEK.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF043LCL bigWig fold change over control ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF186OVM 473867797 ENCODE Processing Pipeline b6f52351b91c50ef889203cf1f0f9db8 https://www.encodeproject.org/files/ENCFF043LCL/@@download/ENCFF043LCL.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF090RDW bigWig fold change over control ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF799JNH 562428332 ENCODE Processing Pipeline 0b07e6f4cab7041869dbc314465bb608 https://www.encodeproject.org/files/ENCFF090RDW/@@download/ENCFF090RDW.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF322XIA bigWig fold change over control ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF186OVM, ENCFF799JNH 848148373 ENCODE Processing Pipeline 409f2324c848fb2e4a1c6fe265b4d95c https://www.encodeproject.org/files/ENCFF322XIA/@@download/ENCFF322XIA.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF207THC bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF799JNH 4695261 ENCODE Processing Pipeline 5617fc6d75e89afdf58ac493617cd07e https://www.encodeproject.org/files/ENCFF207THC/@@download/ENCFF207THC.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF209HPZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF500GAV 66133 ENCODE Processing Pipeline 528595e28732f755bc45cd3bd615be5d https://www.encodeproject.org/files/ENCFF209HPZ/@@download/ENCFF209HPZ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF885VKS bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF186OVM 4703362 ENCODE Processing Pipeline 1ec084ee74df4a5495bc027c8ccdaf35 https://www.encodeproject.org/files/ENCFF885VKS/@@download/ENCFF885VKS.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF623VXV bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF207THC 11262700 ENCODE Processing Pipeline 2ee4ba17a79c7c19a7c301e8bba86873 https://www.encodeproject.org/files/ENCFF623VXV/@@download/ENCFF623VXV.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF861NZS bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF186OVM, ENCFF799JNH 5490085 ENCODE Processing Pipeline a922ae7f578c3e987c043eb196baaf26 https://www.encodeproject.org/files/ENCFF861NZS/@@download/ENCFF861NZS.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF474AFK bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF885VKS 11062991 ENCODE Processing Pipeline c2aef9c18daaa1c5e00eb08937915538 https://www.encodeproject.org/files/ENCFF474AFK/@@download/ENCFF474AFK.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF500GAV bed narrowPeak conservative idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF207THC, ENCFF419RSJ, ENCFF861NZS, ENCFF885VKS 7686 ENCODE Processing Pipeline f414732a6aaa3787a17e9fccc995a3d0 https://www.encodeproject.org/files/ENCFF500GAV/@@download/ENCFF500GAV.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF749QOY bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF861NZS 11344077 ENCODE Processing Pipeline 58418f636c3dcffa8d93bf95d9f48440 https://www.encodeproject.org/files/ENCFF749QOY/@@download/ENCFF749QOY.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF195BKI bed narrowPeak optimal idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF207THC, ENCFF419RSJ, ENCFF861NZS, ENCFF885VKS 10445 ENCODE Processing Pipeline 78e1db3e66799cc9508432dab122f768 https://www.encodeproject.org/files/ENCFF195BKI/@@download/ENCFF195BKI.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF308AFF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195BKI 71677 ENCODE Processing Pipeline 372189ee9ae2cd0c15fd9025c26890aa https://www.encodeproject.org/files/ENCFF308AFF/@@download/ENCFF308AFF.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF700TVT bigWig signal p-value ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF560JLB, ENCFF668MHY 711211589 ENCODE Processing Pipeline d5c296e1b7e1d6fa62366672bc8ff12b https://www.encodeproject.org/files/ENCFF700TVT/@@download/ENCFF700TVT.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF521OLX bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038ZOH 11337637 ENCODE Processing Pipeline f103c7e326a58ff05159a69577ff38c9 https://www.encodeproject.org/files/ENCFF521OLX/@@download/ENCFF521OLX.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF693AFX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF684MOG 65205 ENCODE Processing Pipeline 64331d7c547315892362effc8ef4da52 https://www.encodeproject.org/files/ENCFF693AFX/@@download/ENCFF693AFX.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF208AFB bed narrowPeak optimal idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF038ZOH, ENCFF884XPS, ENCFF929SGA 9470 ENCODE Processing Pipeline d920db9d39dce27b60ab03fd7bb65dad https://www.encodeproject.org/files/ENCFF208AFB/@@download/ENCFF208AFB.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF216UOS bigWig signal p-value ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF560JLB 567553604 ENCODE Processing Pipeline 8569a2355ca4aa229e65258af908310f https://www.encodeproject.org/files/ENCFF216UOS/@@download/ENCFF216UOS.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF527RZH bigWig fold change over control ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF560JLB, ENCFF668MHY 882068957 ENCODE Processing Pipeline c54104eae915f023d8bdbb9f59ca13d9 https://www.encodeproject.org/files/ENCFF527RZH/@@download/ENCFF527RZH.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF038ZOH bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF560JLB, ENCFF668MHY 5491336 ENCODE Processing Pipeline de98d5f3910349e65c273727c2e21cb1 https://www.encodeproject.org/files/ENCFF038ZOH/@@download/ENCFF038ZOH.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF530TNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF208AFB 59311 ENCODE Processing Pipeline fd11c387ae15aa7d1e731233f4be8c2f https://www.encodeproject.org/files/ENCFF530TNI/@@download/ENCFF530TNI.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF649XEF bigWig fold change over control ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF560JLB 502017922 ENCODE Processing Pipeline 3d1d8cfa9b47bf126257185664ad1b9c https://www.encodeproject.org/files/ENCFF649XEF/@@download/ENCFF649XEF.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF080DXH bigWig fold change over control ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF668MHY 567918328 ENCODE Processing Pipeline e55c08f00410a6630aadc7861c59e507 https://www.encodeproject.org/files/ENCFF080DXH/@@download/ENCFF080DXH.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF929SGA bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF560JLB 4706650 ENCODE Processing Pipeline d42a88d216a12127529d2d79002fbd92 https://www.encodeproject.org/files/ENCFF929SGA/@@download/ENCFF929SGA.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF529QHW bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF884XPS 11259093 ENCODE Processing Pipeline bdb4930522fe3effc59df59c0f9f2994 https://www.encodeproject.org/files/ENCFF529QHW/@@download/ENCFF529QHW.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF684MOG bed narrowPeak conservative idr thresholded peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF038ZOH, ENCFF884XPS, ENCFF929SGA 7269 ENCODE Processing Pipeline 296eb6650de416b423dbe5a2c7597807 https://www.encodeproject.org/files/ENCFF684MOG/@@download/ENCFF684MOG.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF785JLK bigWig signal p-value ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF668MHY 600415478 ENCODE Processing Pipeline f33fcc39c86e7b25f3914f9365fb4f89 https://www.encodeproject.org/files/ENCFF785JLK/@@download/ENCFF785JLK.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF884XPS bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF668MHY 4699127 ENCODE Processing Pipeline 6f90fde65bb7f6500c06791315ab13ba https://www.encodeproject.org/files/ENCFF884XPS/@@download/ENCFF884XPS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF398XSW bigBed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF929SGA 11060328 ENCODE Processing Pipeline 7070d93da55749e7e9accab9d4b1febd https://www.encodeproject.org/files/ENCFF398XSW/@@download/ENCFF398XSW.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PAS bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PBA 712123140 Richard Myers, HAIB 6cf810e7f6f6307e761bc33d534f6d79 https://www.encodeproject.org/files/ENCFF000PAS/@@download/ENCFF000PAS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PAT bigBed broadPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UEE 978510 Richard Myers, HAIB 56dea7326f662ef5b6c97cafe8bfb798 https://www.encodeproject.org/files/ENCFF000PAT/@@download/ENCFF000PAT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PAU bigBed broadPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UEF 1136315 Richard Myers, HAIB fb88a87385645060afbe8974a3192734 https://www.encodeproject.org/files/ENCFF000PAU/@@download/ENCFF000PAU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PAV bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PBG 1156730822 Richard Myers, HAIB 68a82ed4fb268b5ca7eab2064cd12b6b https://www.encodeproject.org/files/ENCFF000PAV/@@download/ENCFF000PAV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PAY bigWig raw signal ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 37567356 Richard Myers, HAIB 11207e687ceabceafed1a6db06cce499 https://www.encodeproject.org/files/ENCFF000PAY/@@download/ENCFF000PAY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PAZ bigWig raw signal ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 49539045 Richard Myers, HAIB 2b361d6b3eaafe95d9a64a5ee8326d04 https://www.encodeproject.org/files/ENCFF000PAZ/@@download/ENCFF000PAZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PBA fastq reads ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 654166201 Richard Myers, HAIB 6a5a850d50cf83618845facac77dfb81 https://www.encodeproject.org/files/ENCFF000PBA/@@download/ENCFF000PBA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PBO/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PBG fastq reads ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1177971235 Richard Myers, HAIB 906fc3a59fdcd1e84bff1001b3a18a7e https://www.encodeproject.org/files/ENCFF000PBG/@@download/ENCFF000PBG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PBO/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UEE bed broadPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 564962 Richard Myers, HAIB a72b31a9a8dd79e8f5c52c078e3fe626 https://www.encodeproject.org/files/ENCFF001UEE/@@download/ENCFF001UEE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UEF bed broadPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 689417 Richard Myers, HAIB d70c78fd472cfd1a1fd3f117ed48ed37 https://www.encodeproject.org/files/ENCFF001UEF/@@download/ENCFF001UEF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CJU bed narrowPeak optimal idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 591744 ENCODE Consortium Analysis Working Group a43279815d0173f798277e643247cfaa https://www.encodeproject.org/files/ENCFF002CJU/@@download/ENCFF002CJU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF222VEF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJU 1410241 ENCODE Consortium 5654db55c86f53f30dce90d02257a472 https://www.encodeproject.org/files/ENCFF222VEF/@@download/ENCFF222VEF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF419NQM bam unfiltered alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PBA, ENCFF643CGH 829896153 ENCODE Processing Pipeline 336b40e82c795746290969a2248e07c4 https://www.encodeproject.org/files/ENCFF419NQM/@@download/ENCFF419NQM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF701ALM bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PBA, ENCFF643CGH 456069553 ENCODE Processing Pipeline 1fbcf2da365518e5404bf6873643163e https://www.encodeproject.org/files/ENCFF701ALM/@@download/ENCFF701ALM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF500KKR bam unfiltered alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PBG, ENCFF643CGH 1426232435 ENCODE Processing Pipeline b44a4d9130c454ed62f7e6c27a30dd35 https://www.encodeproject.org/files/ENCFF500KKR/@@download/ENCFF500KKR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF472QNP bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PBG, ENCFF643CGH 839982420 ENCODE Processing Pipeline f1c054aed2f796e364f1fbf4423f1132 https://www.encodeproject.org/files/ENCFF472QNP/@@download/ENCFF472QNP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF704WFR bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PBA, ENCFF807MUK 455965748 ENCODE Processing Pipeline af1caed98059c9aa67b1848556a51f93 https://www.encodeproject.org/files/ENCFF704WFR/@@download/ENCFF704WFR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF557OOJ bam unfiltered alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PBA, ENCFF807MUK 829181704 ENCODE Processing Pipeline 0736ceb046d8df334771127e29eb0c2b https://www.encodeproject.org/files/ENCFF557OOJ/@@download/ENCFF557OOJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF361LLG bam unfiltered alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PBG, ENCFF807MUK 1424957110 ENCODE Processing Pipeline 708ace0ed46cee878cd1289ad390046f https://www.encodeproject.org/files/ENCFF361LLG/@@download/ENCFF361LLG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF752STA bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PBG, ENCFF807MUK 839767451 ENCODE Processing Pipeline 3b6ef9233118828f10113d72d013a644 https://www.encodeproject.org/files/ENCFF752STA/@@download/ENCFF752STA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF672LIJ bigWig signal p-value ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF280GWX, ENCFF704WFR 391547429 ENCODE Processing Pipeline 579b14d7d47494c50e035f90abe0aea9 https://www.encodeproject.org/files/ENCFF672LIJ/@@download/ENCFF672LIJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF676AYJ bigWig fold change over control ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF280GWX, ENCFF704WFR, ENCFF752STA 518900156 ENCODE Processing Pipeline d8ac9bb42e2b77bbf70e7c50e810383b https://www.encodeproject.org/files/ENCFF676AYJ/@@download/ENCFF676AYJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF580JQM bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF280GWX, ENCFF752STA 6363255 ENCODE Processing Pipeline 172a6fe8a42f6c0180258fcc629881ae https://www.encodeproject.org/files/ENCFF580JQM/@@download/ENCFF580JQM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF587BDE bigBed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178TUV 12585444 ENCODE Processing Pipeline 4baa1ffe0406b77d81cebbc423f28f05 https://www.encodeproject.org/files/ENCFF587BDE/@@download/ENCFF587BDE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF458NJP bigBed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF580JQM 12449452 ENCODE Processing Pipeline 23c62510f108b391e347154032a44e71 https://www.encodeproject.org/files/ENCFF458NJP/@@download/ENCFF458NJP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF617QEN bed narrowPeak optimal idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF039LAR, ENCFF178TUV, ENCFF580JQM 723136 ENCODE Processing Pipeline 8834aef0c99b7b03604db5c1a08ed75c https://www.encodeproject.org/files/ENCFF617QEN/@@download/ENCFF617QEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF718HZQ bigWig fold change over control ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF280GWX, ENCFF752STA 380769213 ENCODE Processing Pipeline dbe9a0daa909f7421ff10a5951d5a05f https://www.encodeproject.org/files/ENCFF718HZQ/@@download/ENCFF718HZQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF197KTW bigWig fold change over control ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF280GWX, ENCFF704WFR 228489610 ENCODE Processing Pipeline cadfecc37a85490b629f55cdeb65b814 https://www.encodeproject.org/files/ENCFF197KTW/@@download/ENCFF197KTW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF856LHW bigWig signal p-value ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF280GWX, ENCFF752STA 504392208 ENCODE Processing Pipeline 64dbcab8faa2a949620215c6678dba34 https://www.encodeproject.org/files/ENCFF856LHW/@@download/ENCFF856LHW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF048BDD bigWig signal p-value ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF280GWX, ENCFF704WFR, ENCFF752STA 520557566 ENCODE Processing Pipeline 13cda6bcde3e4061f37c6d58cb918f49 https://www.encodeproject.org/files/ENCFF048BDD/@@download/ENCFF048BDD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF039LAR bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF280GWX, ENCFF704WFR 5860686 ENCODE Processing Pipeline b657c99a66af8fc4b0ec8c9b3eace9e9 https://www.encodeproject.org/files/ENCFF039LAR/@@download/ENCFF039LAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF592FZT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF161PUF 1522760 ENCODE Processing Pipeline a2d936278eca2300f35f9f239a7abf6f https://www.encodeproject.org/files/ENCFF592FZT/@@download/ENCFF592FZT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF582AOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF617QEN 1615980 ENCODE Processing Pipeline ae3f8b0081421a18f8f4297e1283e825 https://www.encodeproject.org/files/ENCFF582AOQ/@@download/ENCFF582AOQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF178TUV bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF280GWX, ENCFF704WFR, ENCFF752STA 7035140 ENCODE Processing Pipeline cbda43ccc69d6f09f485387070ff7d37 https://www.encodeproject.org/files/ENCFF178TUV/@@download/ENCFF178TUV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF888GII bigBed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF039LAR 12176033 ENCODE Processing Pipeline 2b4dbeff4be22f9de70b2ecbbc2f6986 https://www.encodeproject.org/files/ENCFF888GII/@@download/ENCFF888GII.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF161PUF bed narrowPeak conservative idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF039LAR, ENCFF178TUV, ENCFF580JQM 672547 ENCODE Processing Pipeline 03e43a27ba84d2a3fa3b9e4de73f7a51 https://www.encodeproject.org/files/ENCFF161PUF/@@download/ENCFF161PUF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF794LVU bigWig fold change over control ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF472QNP, ENCFF701ALM, ENCFF769ESE 518558201 ENCODE Processing Pipeline 4ef1fba99103e27e943bb9975902f285 https://www.encodeproject.org/files/ENCFF794LVU/@@download/ENCFF794LVU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF445OGN bigWig signal p-value ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701ALM, ENCFF769ESE 434964418 ENCODE Processing Pipeline 636b12c508927b738f2a59e568fab3f5 https://www.encodeproject.org/files/ENCFF445OGN/@@download/ENCFF445OGN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF697WEI bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF472QNP, ENCFF701ALM, ENCFF769ESE 7013879 ENCODE Processing Pipeline bf69af55bf8f5ef3fcbb6b66e5b9f335 https://www.encodeproject.org/files/ENCFF697WEI/@@download/ENCFF697WEI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF934KIL bed narrowPeak conservative idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041OWP, ENCFF419RSJ, ENCFF697WEI, ENCFF753VRR 670716 ENCODE Processing Pipeline 25a92f9156f786aa4bcfda8c234e9316 https://www.encodeproject.org/files/ENCFF934KIL/@@download/ENCFF934KIL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF764BTV bigWig fold change over control ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701ALM, ENCFF769ESE 233536787 ENCODE Processing Pipeline c2af49ed2a27fa1312bf21d242de2881 https://www.encodeproject.org/files/ENCFF764BTV/@@download/ENCFF764BTV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF753VRR bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF472QNP, ENCFF769ESE 6378371 ENCODE Processing Pipeline d005e552f596e9726e4985f15a0c6ac2 https://www.encodeproject.org/files/ENCFF753VRR/@@download/ENCFF753VRR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF289ULL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF934KIL 1517430 ENCODE Processing Pipeline ba6f5116a51552b0b766566aca2e4f0d https://www.encodeproject.org/files/ENCFF289ULL/@@download/ENCFF289ULL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF910KOG bed narrowPeak optimal idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041OWP, ENCFF419RSJ, ENCFF697WEI, ENCFF753VRR 725721 ENCODE Processing Pipeline b1717fd23be577169da82a81da10274a https://www.encodeproject.org/files/ENCFF910KOG/@@download/ENCFF910KOG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF929KAN bigWig signal p-value ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF472QNP, ENCFF769ESE 545937828 ENCODE Processing Pipeline 22be7255b2a3b3a81940f5a33dc60363 https://www.encodeproject.org/files/ENCFF929KAN/@@download/ENCFF929KAN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF367EET bigWig signal p-value ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF472QNP, ENCFF701ALM, ENCFF769ESE 518878047 ENCODE Processing Pipeline 193a9eaf6786983ed072de02acf9e2c7 https://www.encodeproject.org/files/ENCFF367EET/@@download/ENCFF367EET.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF012SQZ bigWig fold change over control ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF472QNP, ENCFF769ESE 379412131 ENCODE Processing Pipeline b201af76b7b1f4c33de83a6b72c3001e https://www.encodeproject.org/files/ENCFF012SQZ/@@download/ENCFF012SQZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF041OWP bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701ALM, ENCFF769ESE 5858511 ENCODE Processing Pipeline 773ee5544e9d5403e61066df2ade5b13 https://www.encodeproject.org/files/ENCFF041OWP/@@download/ENCFF041OWP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF330FLA bigBed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF041OWP 12178813 ENCODE Processing Pipeline 51a405da2245f34d7db7c70861f1dcad https://www.encodeproject.org/files/ENCFF330FLA/@@download/ENCFF330FLA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF361NBC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF910KOG 1618195 ENCODE Processing Pipeline 9e9aaba290bcc04a9d4c74c6d76deca9 https://www.encodeproject.org/files/ENCFF361NBC/@@download/ENCFF361NBC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF022HCN bigBed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF753VRR 12473492 ENCODE Processing Pipeline 64166f74571c4da356f0c301cb922175 https://www.encodeproject.org/files/ENCFF022HCN/@@download/ENCFF022HCN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF710PHG bigBed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF697WEI 12552502 ENCODE Processing Pipeline f513806c2371b54387596f8ca1b7be09 https://www.encodeproject.org/files/ENCFF710PHG/@@download/ENCFF710PHG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF837CJW fastq reads ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 1 50 single-ended 1474769152 Richard Myers, HAIB 89ee21b642c0f77058acd7f98fe32bd0 SRA:SRR5331450 https://www.encodeproject.org/files/ENCFF837CJW/@@download/ENCFF837CJW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released low read depth ENCFF945WVN fastq reads ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 1 50 single-ended 1224213428 Richard Myers, HAIB 551bc9f86021cb7c2b3f21b90e5a7235 SRA:SRR5331449 https://www.encodeproject.org/files/ENCFF945WVN/@@download/ENCFF945WVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGB/ released low read depth ENCFF267EKF bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF807MUK, ENCFF837CJW 1197006611 ENCODE Processing Pipeline b89de83e8fc571eab5cda8b05ffa831c https://www.encodeproject.org/files/ENCFF267EKF/@@download/ENCFF267EKF.bam hg19 released low read depth ENCFF182CYB bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF807MUK, ENCFF945WVN 990833683 ENCODE Processing Pipeline 0897c9e30bee2316802f4b65e0a57160 https://www.encodeproject.org/files/ENCFF182CYB/@@download/ENCFF182CYB.bam hg19 released low read depth ENCFF139KEU bam unfiltered alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 50 ENCFF807MUK, ENCFF945WVN 1305197221 ENCODE Processing Pipeline 6ce450330426a6292c60241664ff494e https://www.encodeproject.org/files/ENCFF139KEU/@@download/ENCFF139KEU.bam hg19 released low read depth ENCFF388AJM bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 50 ENCFF807MUK, ENCFF837CJW 1197006639 ENCODE Processing Pipeline a39959fe10304481284280185474db1d https://www.encodeproject.org/files/ENCFF388AJM/@@download/ENCFF388AJM.bam hg19 released low read depth ENCFF835NGP bam unfiltered alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 50 ENCFF807MUK, ENCFF837CJW 1570382173 ENCODE Processing Pipeline f7c7710f06d1cd98bea532285423de20 https://www.encodeproject.org/files/ENCFF835NGP/@@download/ENCFF835NGP.bam hg19 released low read depth ENCFF057WPZ bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 50 ENCFF807MUK, ENCFF945WVN 990833712 ENCODE Processing Pipeline 378bea0563dbf50eebfa8eef9303708b https://www.encodeproject.org/files/ENCFF057WPZ/@@download/ENCFF057WPZ.bam hg19 released low read depth ENCFF530FQE bigWig signal p-value ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF023YMB, ENCFF388AJM 652331562 ENCODE Processing Pipeline d651a93a71f509c2602de6e5797e1e9e https://www.encodeproject.org/files/ENCFF530FQE/@@download/ENCFF530FQE.bigWig hg19 released low read depth ENCFF126ZZJ bigWig signal p-value ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF057WPZ, ENCFF092ACZ 606608926 ENCODE Processing Pipeline 4513df82eafa53c70e4cb37e32ff89df https://www.encodeproject.org/files/ENCFF126ZZJ/@@download/ENCFF126ZZJ.bigWig hg19 released low read depth ENCFF702ZXJ bigWig signal p-value ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF023YMB, ENCFF057WPZ, ENCFF092ACZ, ENCFF388AJM 1002237612 ENCODE Processing Pipeline 6743fe3cc50ad82b5cdcd7fbb2b4dd94 https://www.encodeproject.org/files/ENCFF702ZXJ/@@download/ENCFF702ZXJ.bigWig hg19 released low read depth ENCFF652VZZ bigBed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF939VGO 11116183 ENCODE Processing Pipeline a6238b649792c55897d9d4284c9b3415 https://www.encodeproject.org/files/ENCFF652VZZ/@@download/ENCFF652VZZ.bigBed hg19 released low read depth ENCFF826XEI bigBed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF649MHK 13282217 ENCODE Processing Pipeline d681ce5ffc54e7c5b4c196f41bb45381 https://www.encodeproject.org/files/ENCFF826XEI/@@download/ENCFF826XEI.bigBed hg19 released low read depth ENCFF152PKU bigWig fold change over control ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF023YMB, ENCFF388AJM 549601057 ENCODE Processing Pipeline 85fa9b8634833af3985c7c7715b684e2 https://www.encodeproject.org/files/ENCFF152PKU/@@download/ENCFF152PKU.bigWig hg19 released low read depth ENCFF240IEH bigWig fold change over control ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF057WPZ, ENCFF092ACZ 472794917 ENCODE Processing Pipeline aa8cce57d1c3715c09eae1c9360319a1 https://www.encodeproject.org/files/ENCFF240IEH/@@download/ENCFF240IEH.bigWig hg19 released low read depth ENCFF935RWY bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF023YMB, ENCFF388AJM 6270021 ENCODE Processing Pipeline dbc92775e620277e3b12ed79fdb72198 https://www.encodeproject.org/files/ENCFF935RWY/@@download/ENCFF935RWY.bed.gz hg19 released low read depth ENCFF371KUO bigWig fold change over control ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF023YMB, ENCFF057WPZ, ENCFF092ACZ, ENCFF388AJM 1080701487 ENCODE Processing Pipeline f93db66264d53d87c6b94a41670e2ad5 https://www.encodeproject.org/files/ENCFF371KUO/@@download/ENCFF371KUO.bigWig hg19 released low read depth ENCFF939VGO bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF057WPZ, ENCFF092ACZ 5334856 ENCODE Processing Pipeline eff79c853adca22eacf0d0f889aabc8d https://www.encodeproject.org/files/ENCFF939VGO/@@download/ENCFF939VGO.bed.gz hg19 released low read depth ENCFF649MHK bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF023YMB, ENCFF057WPZ, ENCFF092ACZ, ENCFF388AJM 6815016 ENCODE Processing Pipeline 1e97055946a0cdc1b6155530135a8074 https://www.encodeproject.org/files/ENCFF649MHK/@@download/ENCFF649MHK.bed.gz hg19 released low read depth ENCFF997ADV bigBed narrowPeak optimal idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF470MLY 490868 ENCODE Processing Pipeline 72b5778e871ec3306a7bd31b801877c2 https://www.encodeproject.org/files/ENCFF997ADV/@@download/ENCFF997ADV.bigBed hg19 released low read depth ENCFF737YFG bigBed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF935RWY 13058925 ENCODE Processing Pipeline b1816d637fa6c1a2f705949c326ab8e7 https://www.encodeproject.org/files/ENCFF737YFG/@@download/ENCFF737YFG.bigBed hg19 released low read depth ENCFF459ESZ bigBed narrowPeak conservative idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF496CSN 401109 ENCODE Processing Pipeline 10d0a6887f56baf530d97db05f0c9d6b https://www.encodeproject.org/files/ENCFF459ESZ/@@download/ENCFF459ESZ.bigBed hg19 released low read depth ENCFF496CSN bed narrowPeak conservative idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF001TDO, ENCFF649MHK, ENCFF935RWY, ENCFF939VGO 196970 ENCODE Processing Pipeline 5879d9de68c11d1bf13234fc432a76b8 https://www.encodeproject.org/files/ENCFF496CSN/@@download/ENCFF496CSN.bed.gz hg19 released low read depth ENCFF470MLY bed narrowPeak optimal idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF001TDO, ENCFF649MHK, ENCFF935RWY, ENCFF939VGO 263596 ENCODE Processing Pipeline 4deea444df0f55717f0b9f7d26c0db9b https://www.encodeproject.org/files/ENCFF470MLY/@@download/ENCFF470MLY.bed.gz hg19 released low read depth ENCFF833BLL bam unfiltered alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 50 ENCFF643CGH, ENCFF945WVN 1309278408 ENCODE Processing Pipeline ccd8da4414182b10b33b086557d5cb7b https://www.encodeproject.org/files/ENCFF833BLL/@@download/ENCFF833BLL.bam GRCh38 released low read depth ENCFF665BZJ bam unfiltered alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 50 ENCFF643CGH, ENCFF837CJW 1573285455 ENCODE Processing Pipeline 1c86c8ac828f3b343376d166255a00d9 https://www.encodeproject.org/files/ENCFF665BZJ/@@download/ENCFF665BZJ.bam GRCh38 released low read depth ENCFF502VUK bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 50 ENCFF643CGH, ENCFF945WVN 990487143 ENCODE Processing Pipeline 776ec5ffba48125a1209d1e5f9acd002 https://www.encodeproject.org/files/ENCFF502VUK/@@download/ENCFF502VUK.bam GRCh38 released low read depth ENCFF655OEX bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 50 ENCFF643CGH, ENCFF837CJW 1196518197 ENCODE Processing Pipeline 28498adc3fb4a61e83d1f7ea479c57e8 https://www.encodeproject.org/files/ENCFF655OEX/@@download/ENCFF655OEX.bam GRCh38 released low read depth ENCFF266MVF bigWig signal p-value ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF655OEX, ENCFF709XAA 747864284 ENCODE Processing Pipeline d80dc622b8b2ed308cfb9f6d67e0392a https://www.encodeproject.org/files/ENCFF266MVF/@@download/ENCFF266MVF.bigWig GRCh38 released low read depth ENCFF706DMF bigWig signal p-value ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF285EWB, ENCFF502VUK 539476812 ENCODE Processing Pipeline f67e435a1c0720a1703657aa858bef32 https://www.encodeproject.org/files/ENCFF706DMF/@@download/ENCFF706DMF.bigWig GRCh38 released low read depth ENCFF510BMM bigWig signal p-value ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF285EWB, ENCFF502VUK, ENCFF655OEX, ENCFF709XAA 1105822559 ENCODE Processing Pipeline cf165b4dbb6802ad229f8a598093d238 https://www.encodeproject.org/files/ENCFF510BMM/@@download/ENCFF510BMM.bigWig GRCh38 released low read depth ENCFF714RDN bigWig fold change over control ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF655OEX, ENCFF709XAA 549481833 ENCODE Processing Pipeline e53caee8efdbd0468d71d930272cc4df https://www.encodeproject.org/files/ENCFF714RDN/@@download/ENCFF714RDN.bigWig GRCh38 released low read depth ENCFF211CUZ bigWig fold change over control ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF285EWB, ENCFF502VUK 453709870 ENCODE Processing Pipeline 8e7b941ff2e7c5e7304cd2bd60aec504 https://www.encodeproject.org/files/ENCFF211CUZ/@@download/ENCFF211CUZ.bigWig GRCh38 released low read depth ENCFF205QAK bigWig fold change over control ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF285EWB, ENCFF502VUK, ENCFF655OEX, ENCFF709XAA 1087193107 ENCODE Processing Pipeline e98ec5179a327280c21aad0ec5c30dbb https://www.encodeproject.org/files/ENCFF205QAK/@@download/ENCFF205QAK.bigWig GRCh38 released low read depth ENCFF786NME bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF285EWB, ENCFF502VUK, ENCFF655OEX, ENCFF709XAA 6686514 ENCODE Processing Pipeline 8313c07392a735e4c4825a41653894af https://www.encodeproject.org/files/ENCFF786NME/@@download/ENCFF786NME.bed.gz GRCh38 released low read depth ENCFF183QZB bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF655OEX, ENCFF709XAA 6067722 ENCODE Processing Pipeline 4d460eb19f03963eb9813170043022c0 https://www.encodeproject.org/files/ENCFF183QZB/@@download/ENCFF183QZB.bed.gz GRCh38 released low read depth ENCFF674UBG bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF285EWB, ENCFF502VUK 5142366 ENCODE Processing Pipeline b9435d56291e10aac952795e0061b933 https://www.encodeproject.org/files/ENCFF674UBG/@@download/ENCFF674UBG.bed.gz GRCh38 released low read depth ENCFF055NYF bigBed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF183QZB 13044498 ENCODE Processing Pipeline 7ccdff8f449b91756442a012b069b848 https://www.encodeproject.org/files/ENCFF055NYF/@@download/ENCFF055NYF.bigBed GRCh38 released low read depth ENCFF332FKV bigBed narrowPeak conservative idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF768YPD 408205 ENCODE Processing Pipeline 36bbf2c76f4bbab6aa1c50a00a8104c3 https://www.encodeproject.org/files/ENCFF332FKV/@@download/ENCFF332FKV.bigBed GRCh38 released low read depth ENCFF768YPD bed narrowPeak conservative idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF183QZB, ENCFF419RSJ, ENCFF674UBG, ENCFF786NME 200845 ENCODE Processing Pipeline 076cba5a53b9d3e8cfedd0606cdc0985 https://www.encodeproject.org/files/ENCFF768YPD/@@download/ENCFF768YPD.bed.gz GRCh38 released low read depth ENCFF467FYE bigBed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF674UBG 11028380 ENCODE Processing Pipeline 007d5e26b684cc019525c53cd5047cc8 https://www.encodeproject.org/files/ENCFF467FYE/@@download/ENCFF467FYE.bigBed GRCh38 released low read depth ENCFF617QSK bed narrowPeak optimal idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF183QZB, ENCFF419RSJ, ENCFF674UBG, ENCFF786NME 266336 ENCODE Processing Pipeline 046b782ea7920ad8889abd52fee8102b https://www.encodeproject.org/files/ENCFF617QSK/@@download/ENCFF617QSK.bed.gz GRCh38 released low read depth ENCFF940VXW bigBed narrowPeak optimal idr thresholded peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF617QSK 496603 ENCODE Processing Pipeline 94a05286a4eea0a0e1a7fd448f0bf252 https://www.encodeproject.org/files/ENCFF940VXW/@@download/ENCFF940VXW.bigBed GRCh38 released low read depth ENCFF944YCP bigBed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1, 3 ENCFF786NME 13308475 ENCODE Processing Pipeline 10f88ed321156694a5570b216eb10ffe https://www.encodeproject.org/files/ENCFF944YCP/@@download/ENCFF944YCP.bigBed GRCh38 released low read depth ENCFF570JXV fastq reads ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 1 36 single-ended 1504457857 Bradley Bernstein, Broad 70011c6751f71af74f69ff254deb239d https://www.encodeproject.org/files/ENCFF570JXV/@@download/ENCFF570JXV.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVH/, /files/ENCFF244WIG/, /files/ENCFF651VMP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF869ZLB fastq reads ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 1 50 single-ended 809277935 Bradley Bernstein, Broad c50411d6c611609e5c60cd2a613604df https://www.encodeproject.org/files/ENCFF869ZLB/@@download/ENCFF869ZLB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVH/, /files/ENCFF244WIG/, /files/ENCFF651VMP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF807HTB fastq reads ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 1 76 single-ended 2233025150 Bradley Bernstein, Broad f754b0643591a945872e242cd7f7d5d1 https://www.encodeproject.org/files/ENCFF807HTB/@@download/ENCFF807HTB.fastq.gz Illumina HiSeq 2500 /files/ENCFF355DMM/, /files/ENCFF812ISD/, /files/ENCFF935ETD/, /files/ENCFF982FDH/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF488YTE fastq reads ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 1 76 single-ended 2258639176 Bradley Bernstein, Broad f0c668995deadca2575242bae94f38fc https://www.encodeproject.org/files/ENCFF488YTE/@@download/ENCFF488YTE.fastq.gz Illumina HiSeq 2500 /files/ENCFF355DMM/, /files/ENCFF812ISD/, /files/ENCFF935ETD/, /files/ENCFF982FDH/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF818NGK bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF570JXV, ENCFF643CGH, ENCFF869ZLB 1646072958 ENCODE Processing Pipeline c5151786c4abcad69a3776e234ccfe7f https://www.encodeproject.org/files/ENCFF818NGK/@@download/ENCFF818NGK.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF737THP bam unfiltered alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF488YTE, ENCFF807HTB, ENCFF807MUK 2700139839 ENCODE Processing Pipeline 6e0043500a4b0d04cbdd50f63d7b3c6b https://www.encodeproject.org/files/ENCFF737THP/@@download/ENCFF737THP.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF070QPD bam unfiltered alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF570JXV, ENCFF807MUK, ENCFF869ZLB 2762014727 ENCODE Processing Pipeline 3bf4a17e1b7b8bfea16183804400bb34 https://www.encodeproject.org/files/ENCFF070QPD/@@download/ENCFF070QPD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF896ZBM bam unfiltered alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF488YTE, ENCFF643CGH, ENCFF807HTB 2718986465 ENCODE Processing Pipeline 1aa2f8a35df24af40c268afe995f1c81 https://www.encodeproject.org/files/ENCFF896ZBM/@@download/ENCFF896ZBM.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF971WZZ bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF488YTE, ENCFF643CGH, ENCFF807HTB 1570261199 ENCODE Processing Pipeline b5fd3cbb9b9753efaa4e7e477d240832 https://www.encodeproject.org/files/ENCFF971WZZ/@@download/ENCFF971WZZ.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF764LWU bam unfiltered alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF570JXV, ENCFF643CGH, ENCFF869ZLB 2777624132 ENCODE Processing Pipeline 03d6e1f555aabfb3ed75f9ec8ff487c7 https://www.encodeproject.org/files/ENCFF764LWU/@@download/ENCFF764LWU.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF511AXI bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF488YTE, ENCFF807HTB, ENCFF807MUK 1571114379 ENCODE Processing Pipeline b057ed66a6b1562e018509adcc0036e1 https://www.encodeproject.org/files/ENCFF511AXI/@@download/ENCFF511AXI.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF617BET bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF570JXV, ENCFF807MUK, ENCFF869ZLB 1646937969 ENCODE Processing Pipeline 6cf056b31c6fd25f414d8fe49271c10b https://www.encodeproject.org/files/ENCFF617BET/@@download/ENCFF617BET.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF689YNN bigWig signal p-value ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF349UGY, ENCFF408JOT, ENCFF617BET 1253070568 ENCODE Processing Pipeline fb354bedf4719b7dd503b31aaceb92d8 https://www.encodeproject.org/files/ENCFF689YNN/@@download/ENCFF689YNN.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF010SJS bigWig signal p-value ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI 1539794061 ENCODE Processing Pipeline b68dc33e4b6a909967e09fce5bb8556e https://www.encodeproject.org/files/ENCFF010SJS/@@download/ENCFF010SJS.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF309RAI bigWig signal p-value ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF506DRY, ENCFF676EKJ, ENCFF818NGK 1486817676 ENCODE Processing Pipeline 690901bf8c569c20ef39b6d174a833ad https://www.encodeproject.org/files/ENCFF309RAI/@@download/ENCFF309RAI.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF508TFH bigWig signal p-value ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF506DRY, ENCFF676EKJ, ENCFF971WZZ 1323758279 ENCODE Processing Pipeline e2541c650156f5c75e7607ebde049ddd https://www.encodeproject.org/files/ENCFF508TFH/@@download/ENCFF508TFH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF957YRG bigWig signal p-value ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF506DRY, ENCFF676EKJ, ENCFF818NGK, ENCFF971WZZ 1868276200 ENCODE Processing Pipeline 21715c92a02586687e7db790dc660ea2 https://www.encodeproject.org/files/ENCFF957YRG/@@download/ENCFF957YRG.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF627NGD bigWig signal p-value ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI, ENCFF617BET 1651832912 ENCODE Processing Pipeline 29597794f8958f3808d123eb62a1bdb9 https://www.encodeproject.org/files/ENCFF627NGD/@@download/ENCFF627NGD.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF930OQY bigWig fold change over control ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF349UGY, ENCFF408JOT, ENCFF617BET 1388792384 ENCODE Processing Pipeline 213265b9ce01d86fb679198aafc5acd2 https://www.encodeproject.org/files/ENCFF930OQY/@@download/ENCFF930OQY.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF477NWW bigWig fold change over control ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF506DRY, ENCFF676EKJ, ENCFF818NGK 1382188136 ENCODE Processing Pipeline bcb1cf470fd6243688fb3934bee7cb2f https://www.encodeproject.org/files/ENCFF477NWW/@@download/ENCFF477NWW.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF611MHN bigWig fold change over control ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI 1463975130 ENCODE Processing Pipeline a93d639c55f929872457f49d35246743 https://www.encodeproject.org/files/ENCFF611MHN/@@download/ENCFF611MHN.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF185NLU bigWig fold change over control ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF506DRY, ENCFF676EKJ, ENCFF971WZZ 1468417942 ENCODE Processing Pipeline 6f036ad0265229360d1d24f3f010e6ca https://www.encodeproject.org/files/ENCFF185NLU/@@download/ENCFF185NLU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF885YNL bigWig fold change over control ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI, ENCFF617BET 1836595416 ENCODE Processing Pipeline 97bfe9354eec342a57445c9387bea1eb https://www.encodeproject.org/files/ENCFF885YNL/@@download/ENCFF885YNL.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF294OXN bigWig fold change over control ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF506DRY, ENCFF676EKJ, ENCFF818NGK, ENCFF971WZZ 1826328679 ENCODE Processing Pipeline 5593ee62d1b8bdf793c95dd5a7b65d5b https://www.encodeproject.org/files/ENCFF294OXN/@@download/ENCFF294OXN.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF947XIL bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF349UGY, ENCFF408JOT, ENCFF617BET 6824200 ENCODE Processing Pipeline 423e5c587283524e2bfd1703cf571e12 https://www.encodeproject.org/files/ENCFF947XIL/@@download/ENCFF947XIL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF924QYS bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI 6954946 ENCODE Processing Pipeline 347204c58c34a7293b03f05d4a00694b https://www.encodeproject.org/files/ENCFF924QYS/@@download/ENCFF924QYS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF650LED bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF506DRY, ENCFF676EKJ, ENCFF971WZZ 6959947 ENCODE Processing Pipeline a47cb4835f5108375e4018e1e6d84026 https://www.encodeproject.org/files/ENCFF650LED/@@download/ENCFF650LED.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF955UHS bigBed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF924QYS 13296098 ENCODE Processing Pipeline c5f2727ce34a1e69790dfec568effc19 https://www.encodeproject.org/files/ENCFF955UHS/@@download/ENCFF955UHS.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF930CDD bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI, ENCFF617BET 7237617 ENCODE Processing Pipeline ea3c63b92f8bb96779a9bec78e8d1ce6 https://www.encodeproject.org/files/ENCFF930CDD/@@download/ENCFF930CDD.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF061UXU bed narrowPeak optimal idr thresholded peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF924QYS, ENCFF930CDD, ENCFF947XIL 27293 ENCODE Processing Pipeline b8106da77faf4812f9415741a7eae9df https://www.encodeproject.org/files/ENCFF061UXU/@@download/ENCFF061UXU.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF117ART bed narrowPeak optimal idr thresholded peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF438MRB, ENCFF597PND, ENCFF650LED 28570 ENCODE Processing Pipeline ae69db9e4bf266961985ae284fc3fe43 https://www.encodeproject.org/files/ENCFF117ART/@@download/ENCFF117ART.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF507UQF bigBed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF930CDD 13163686 ENCODE Processing Pipeline 5b1c902a2d2665c73d2f5343b5d48dfc https://www.encodeproject.org/files/ENCFF507UQF/@@download/ENCFF507UQF.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF022PYF bigBed narrowPeak optimal idr thresholded peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF061UXU 96288 ENCODE Processing Pipeline b61f702261fbe09ade3de709de0ae29f https://www.encodeproject.org/files/ENCFF022PYF/@@download/ENCFF022PYF.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF597PND bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF506DRY, ENCFF676EKJ, ENCFF818NGK, ENCFF971WZZ 7241608 ENCODE Processing Pipeline bcded0da8f86b387f9cc5120bdcd75dd https://www.encodeproject.org/files/ENCFF597PND/@@download/ENCFF597PND.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF791ORL bigBed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF438MRB 13330523 ENCODE Processing Pipeline cb6b53db5d06bc34967b555dc443dc92 https://www.encodeproject.org/files/ENCFF791ORL/@@download/ENCFF791ORL.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF573RAA bigBed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF650LED 13294347 ENCODE Processing Pipeline 71088bfec795f391a7418dd5d6751184 https://www.encodeproject.org/files/ENCFF573RAA/@@download/ENCFF573RAA.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF438MRB bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF506DRY, ENCFF676EKJ, ENCFF818NGK 6824449 ENCODE Processing Pipeline fc38c1b502df5b47d294e7cac4646cdb https://www.encodeproject.org/files/ENCFF438MRB/@@download/ENCFF438MRB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF304UZF bigBed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF947XIL 13330630 ENCODE Processing Pipeline fff5611a12b34d467c1bd818976fcc93 https://www.encodeproject.org/files/ENCFF304UZF/@@download/ENCFF304UZF.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF887AAQ bigBed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF597PND 13167656 ENCODE Processing Pipeline d34054859c1f51304844eb9b2f11ab87 https://www.encodeproject.org/files/ENCFF887AAQ/@@download/ENCFF887AAQ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF861SNS bigBed narrowPeak optimal idr thresholded peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF117ART 98477 ENCODE Processing Pipeline 47ebb0f4aa871317c5abe1ddd92cb603 https://www.encodeproject.org/files/ENCFF861SNS/@@download/ENCFF861SNS.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF000YHF bigBed narrowPeak peaks ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMF 2155344 Kevin Struhl, HMS 09aa26d494cb43fc800dea950111ad65 https://www.encodeproject.org/files/ENCFF000YHF/@@download/ENCFF000YHF.bigBed hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YHG bam alignments ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YHY 174407334 Kevin Struhl, HMS 6da64e128bc85b81a9aca726c52d2e49 https://www.encodeproject.org/files/ENCFF000YHG/@@download/ENCFF000YHG.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YHH bam alignments ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHX 349721276 Kevin Struhl, HMS 79ff0c0fa0512e1340a9f8b125762807 https://www.encodeproject.org/files/ENCFF000YHH/@@download/ENCFF000YHH.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YHI bigWig signal ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 323864579 Kevin Struhl, HMS 16ed62b911a02c3f07096b88ce476d3b https://www.encodeproject.org/files/ENCFF000YHI/@@download/ENCFF000YHI.bigWig hg19 released low read length, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YHX fastq reads ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 996457214 Kevin Struhl, HMS a045579dd4e76048510aa8377e441f35 https://www.encodeproject.org/files/ENCFF000YHX/@@download/ENCFF000YHX.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released low read length, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YHY fastq reads ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 343182883 Kevin Struhl, HMS d204ec18d752c4309b35396f9e0b0805 https://www.encodeproject.org/files/ENCFF000YHY/@@download/ENCFF000YHY.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF001VMF bed narrowPeak peaks ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 839229 Kevin Struhl, HMS 2c31d012aa97330d5e1b6cf2f24ebd8b https://www.encodeproject.org/files/ENCFF001VMF/@@download/ENCFF001VMF.bed.gz hg19 released low read length, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CVU bed narrowPeak optimal idr thresholded peaks ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 478673 ENCODE Consortium Analysis Working Group 32c2e57570701d01ddb5dfa07e83b726 https://www.encodeproject.org/files/ENCFF002CVU/@@download/ENCFF002CVU.bed.gz hg19 released low read length, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF608OGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVU 1235466 ENCODE Consortium 0194def898eaf4beb236a54260436071 https://www.encodeproject.org/files/ENCFF608OGE/@@download/ENCFF608OGE.bigBed hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YGK bam alignments ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YGP 287068036 Kevin Struhl, HMS cec4e8359801f6b2778d77857a5d1984 https://www.encodeproject.org/files/ENCFF000YGK/@@download/ENCFF000YGK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGL bam alignments ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YGS 219679702 Kevin Struhl, HMS 7ef5e0a402350f666cb16497d825d0e7 https://www.encodeproject.org/files/ENCFF000YGL/@@download/ENCFF000YGL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGM bam alignments ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YGR 116977443 Kevin Struhl, HMS 73e014ea5121f7386d838bd76af92e09 https://www.encodeproject.org/files/ENCFF000YGM/@@download/ENCFF000YGM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGN bigBed narrowPeak peaks ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMC 80096 Kevin Struhl, HMS 37674a72c4ec009530e79a1f9a11fc13 https://www.encodeproject.org/files/ENCFF000YGN/@@download/ENCFF000YGN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGO bigWig signal ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 319695699 Kevin Struhl, HMS b7fcffdbfbe5318ff9d25da9c2acb406 https://www.encodeproject.org/files/ENCFF000YGO/@@download/ENCFF000YGO.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YGP fastq reads ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 225852664 Kevin Struhl, HMS 11ad8cb0f7853431a6b85b8535da3bc5 https://www.encodeproject.org/files/ENCFF000YGP/@@download/ENCFF000YGP.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YGR fastq reads ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 92302103 Kevin Struhl, HMS 8ca4dd516a9e839ee446bacb7c9ff332 https://www.encodeproject.org/files/ENCFF000YGR/@@download/ENCFF000YGR.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YGS fastq reads ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 164968246 Kevin Struhl, HMS 24cf38467a29f009d27f8077dd0bd481 https://www.encodeproject.org/files/ENCFF000YGS/@@download/ENCFF000YGS.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VMC bed narrowPeak peaks ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1975 Kevin Struhl, HMS 2c48e5cbdc23bf72359224b3c7554089 https://www.encodeproject.org/files/ENCFF001VMC/@@download/ENCFF001VMC.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CVR bed narrowPeak optimal idr thresholded peaks ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 5144 ENCODE Consortium Analysis Working Group 64986bc4157feecb565adbfe599fcc07 https://www.encodeproject.org/files/ENCFF002CVR/@@download/ENCFF002CVR.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF822AYT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVR 86829 ENCODE Consortium 79746475fcf4cbed8110b89632b150d8 https://www.encodeproject.org/files/ENCFF822AYT/@@download/ENCFF822AYT.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XUC bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 482770312 Michael Snyder, Stanford e3742e68330cedf0a82dcd8e389fb38e https://www.encodeproject.org/files/ENCFF000XUC/@@download/ENCFF000XUC.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XUD bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 410813605 Michael Snyder, Stanford dfdd6a04d074b1367b07ef4d377d1777 https://www.encodeproject.org/files/ENCFF000XUD/@@download/ENCFF000XUD.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XUE bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VKM 2033499 Michael Snyder, Stanford d4e87b24f66780f5ee00aa5e5291b39d https://www.encodeproject.org/files/ENCFF000XUE/@@download/ENCFF000XUE.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUF fastq reads ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 866225056 Michael Snyder, Stanford 1c1e797231a008b0b48989aee5dd79f0 https://www.encodeproject.org/files/ENCFF000XUF/@@download/ENCFF000XUF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUH fastq reads ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 678150120 Michael Snyder, Stanford 93d5238f401cd8c8be76f48725361a99 https://www.encodeproject.org/files/ENCFF000XUH/@@download/ENCFF000XUH.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUJ bigWig signal ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 341192429 Michael Snyder, Stanford 0c93b7c6ce110ce6f59d1fef8b1daa97 https://www.encodeproject.org/files/ENCFF000XUJ/@@download/ENCFF000XUJ.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VKM bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 756161 Michael Snyder, Stanford 01cade399426ccaecc92a62b376c3d68 https://www.encodeproject.org/files/ENCFF001VKM/@@download/ENCFF001VKM.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CUJ bed narrowPeak optimal idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 305935 ENCODE Consortium Analysis Working Group a26edd5eb837b1e381118d2460558d40 https://www.encodeproject.org/files/ENCFF002CUJ/@@download/ENCFF002CUJ.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF771XWP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CUJ 837163 ENCODE Consortium 4d9ed9c1e83fb5781ec6c6f22b915289 https://www.encodeproject.org/files/ENCFF771XWP/@@download/ENCFF771XWP.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF870MAQ bam unfiltered alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUH, ENCFF643CGH 790087161 ENCODE Processing Pipeline 3612e5f332278c16f669f29b2857ce37 https://www.encodeproject.org/files/ENCFF870MAQ/@@download/ENCFF870MAQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF675JRZ bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUH, ENCFF643CGH 555495049 ENCODE Processing Pipeline 3c5c3fbc62a7274181dd9ea7f5e4556e https://www.encodeproject.org/files/ENCFF675JRZ/@@download/ENCFF675JRZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864TPK bam unfiltered alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUF, ENCFF643CGH 999037745 ENCODE Processing Pipeline f52f6f028aaa427d298dfc0994ed374a https://www.encodeproject.org/files/ENCFF864TPK/@@download/ENCFF864TPK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388QKQ bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUF, ENCFF643CGH 666666748 ENCODE Processing Pipeline 879eeedbe1fa29d8009924a16fe217db https://www.encodeproject.org/files/ENCFF388QKQ/@@download/ENCFF388QKQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF747IQN bam unfiltered alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUF, ENCFF807MUK 994229026 ENCODE Processing Pipeline 793710cbb6402cb9e33069b571665bc8 https://www.encodeproject.org/files/ENCFF747IQN/@@download/ENCFF747IQN.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185VLH bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUH, ENCFF807MUK 555824232 ENCODE Processing Pipeline 9d2188afa1ea88f8c857b7d4a101f21a https://www.encodeproject.org/files/ENCFF185VLH/@@download/ENCFF185VLH.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF572TYC bam unfiltered alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUH, ENCFF807MUK 786116882 ENCODE Processing Pipeline e0806173dab8a13aa744e2e4410b6d72 https://www.encodeproject.org/files/ENCFF572TYC/@@download/ENCFF572TYC.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF862AER bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUF, ENCFF807MUK 667038765 ENCODE Processing Pipeline 67435f97e947ff7d9bca67cdfb14746e https://www.encodeproject.org/files/ENCFF862AER/@@download/ENCFF862AER.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF965PHJ bigWig signal p-value ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF388QKQ 462193833 ENCODE Processing Pipeline 4fee35af2ea6273d53599337d31d676e https://www.encodeproject.org/files/ENCFF965PHJ/@@download/ENCFF965PHJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998IBG bigWig signal p-value ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF675JRZ 567110831 ENCODE Processing Pipeline 17819c0d464ddcb61c51d752377cca2f https://www.encodeproject.org/files/ENCFF998IBG/@@download/ENCFF998IBG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF501VAI bigWig fold change over control ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF388QKQ 377005982 ENCODE Processing Pipeline 14a838b8c09f8093ecc7bd5039ef27b6 https://www.encodeproject.org/files/ENCFF501VAI/@@download/ENCFF501VAI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF661RGH bigWig signal p-value ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF388QKQ, ENCFF675JRZ 609751664 ENCODE Processing Pipeline 29a3204f7915f49f439b007d8cc6893c https://www.encodeproject.org/files/ENCFF661RGH/@@download/ENCFF661RGH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460BBP bigWig fold change over control ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF675JRZ 329810935 ENCODE Processing Pipeline 4c4a18a64f3e2b721303b0e43cf7ae4d https://www.encodeproject.org/files/ENCFF460BBP/@@download/ENCFF460BBP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF220PLV bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF675JRZ 4700794 ENCODE Processing Pipeline e978c9ee5c4b2d3f51a744b4751debdc https://www.encodeproject.org/files/ENCFF220PLV/@@download/ENCFF220PLV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF016QMU bigWig fold change over control ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF388QKQ, ENCFF675JRZ 628874248 ENCODE Processing Pipeline 70f101c2bbf8d51df4ddbcb4fd318b93 https://www.encodeproject.org/files/ENCFF016QMU/@@download/ENCFF016QMU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699DHK bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF388QKQ 4991690 ENCODE Processing Pipeline 45184b6c77d1d83cacc512ea297fbb0b https://www.encodeproject.org/files/ENCFF699DHK/@@download/ENCFF699DHK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF165OFI bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF388QKQ, ENCFF675JRZ 5653366 ENCODE Processing Pipeline d965b2edd1be09a4b7c32b8823f72a03 https://www.encodeproject.org/files/ENCFF165OFI/@@download/ENCFF165OFI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF238MIV bed narrowPeak conservative idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165OFI, ENCFF220PLV, ENCFF419RSJ, ENCFF699DHK 232642 ENCODE Processing Pipeline 7207f3fde39a45be23582f21467950bf https://www.encodeproject.org/files/ENCFF238MIV/@@download/ENCFF238MIV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF345ZJK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF238MIV 459257 ENCODE Processing Pipeline ccafddaabe97bbe81db9f937f4b85801 https://www.encodeproject.org/files/ENCFF345ZJK/@@download/ENCFF345ZJK.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF140PUO bed narrowPeak optimal idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165OFI, ENCFF220PLV, ENCFF419RSJ, ENCFF699DHK 268470 ENCODE Processing Pipeline 044bc62a00c09ea9eaaf587ca25e13da https://www.encodeproject.org/files/ENCFF140PUO/@@download/ENCFF140PUO.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF666QGP bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165OFI 13510642 ENCODE Processing Pipeline 0f00202d6670570ddad86161740a5adb https://www.encodeproject.org/files/ENCFF666QGP/@@download/ENCFF666QGP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF043EMI bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF699DHK 10996410 ENCODE Processing Pipeline 04ec6eeac751e900596ae8b370fb259e https://www.encodeproject.org/files/ENCFF043EMI/@@download/ENCFF043EMI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF240KCU bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF220PLV 10897731 ENCODE Processing Pipeline b16d744ce0237287da1ffa40cf4dff83 https://www.encodeproject.org/files/ENCFF240KCU/@@download/ENCFF240KCU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF389VCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF140PUO 509962 ENCODE Processing Pipeline 5bedde6a4a216b8f42a14f2ab987ae7b https://www.encodeproject.org/files/ENCFF389VCS/@@download/ENCFF389VCS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF062KZM bigWig fold change over control ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF862AER 377998970 ENCODE Processing Pipeline ad4f77f869e06b3073cf937bbecbfd23 https://www.encodeproject.org/files/ENCFF062KZM/@@download/ENCFF062KZM.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF265GFD bigWig fold change over control ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF185VLH 322500972 ENCODE Processing Pipeline 5a548e9eb901ea8ee40de9bbf691311e https://www.encodeproject.org/files/ENCFF265GFD/@@download/ENCFF265GFD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF051CAQ bigWig fold change over control ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF185VLH, ENCFF862AER 617901117 ENCODE Processing Pipeline 9e351c41e2bf3a1062ecff6365c514c1 https://www.encodeproject.org/files/ENCFF051CAQ/@@download/ENCFF051CAQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF343OLD bigWig signal p-value ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF185VLH 566884633 ENCODE Processing Pipeline 2cc27feffc520feb1c7ca44a25b4ffb7 https://www.encodeproject.org/files/ENCFF343OLD/@@download/ENCFF343OLD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF131TOR bigWig signal p-value ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF185VLH, ENCFF862AER 629470698 ENCODE Processing Pipeline 2569f16e79524edc615398f8e29884cb https://www.encodeproject.org/files/ENCFF131TOR/@@download/ENCFF131TOR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF617LWA bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF862AER 4994239 ENCODE Processing Pipeline 8aa8aa4ef2f55bb730811deb12821ea0 https://www.encodeproject.org/files/ENCFF617LWA/@@download/ENCFF617LWA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364UAZ bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF447AAX 10837322 ENCODE Processing Pipeline ced944f4b2bfd5855d8258580cc66b5e https://www.encodeproject.org/files/ENCFF364UAZ/@@download/ENCFF364UAZ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF969FOU bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF185VLH, ENCFF862AER 5654844 ENCODE Processing Pipeline 51cd9d31660c3e52b0abccd751bb5e96 https://www.encodeproject.org/files/ENCFF969FOU/@@download/ENCFF969FOU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF452IIL bigWig signal p-value ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF862AER 569867565 ENCODE Processing Pipeline 2ac77fa6c598e9673d40e2864a5870da https://www.encodeproject.org/files/ENCFF452IIL/@@download/ENCFF452IIL.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF447AAX bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF185VLH 4611839 ENCODE Processing Pipeline 669c475ec01d0c94b9df6df24ffcd46b https://www.encodeproject.org/files/ENCFF447AAX/@@download/ENCFF447AAX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF032AEP bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF617LWA 10994009 ENCODE Processing Pipeline 34d79708c634b73f0a119224f96fa54b https://www.encodeproject.org/files/ENCFF032AEP/@@download/ENCFF032AEP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF791MBE bigBed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF969FOU 13506199 ENCODE Processing Pipeline a6d0479f1b9671585fbe12a220f58cca https://www.encodeproject.org/files/ENCFF791MBE/@@download/ENCFF791MBE.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF999ZXB bed narrowPeak conservative idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF447AAX, ENCFF617LWA, ENCFF969FOU 231208 ENCODE Processing Pipeline 2e5a754fa7bfde252a7f3db0e4104d1e https://www.encodeproject.org/files/ENCFF999ZXB/@@download/ENCFF999ZXB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF059UHP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF999ZXB 456497 ENCODE Processing Pipeline 182746500505b4e11d1c9c555c350f29 https://www.encodeproject.org/files/ENCFF059UHP/@@download/ENCFF059UHP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF922GRD bed narrowPeak optimal idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF447AAX, ENCFF617LWA, ENCFF969FOU 271367 ENCODE Processing Pipeline 4f3c95d6b517e83237e0771cb7daffc3 https://www.encodeproject.org/files/ENCFF922GRD/@@download/ENCFF922GRD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF736JUN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF922GRD 620174 ENCODE Processing Pipeline 2dc5b2c936ab067edf644086219f3af7 https://www.encodeproject.org/files/ENCFF736JUN/@@download/ENCFF736JUN.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PHI bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PIE 1560236360 Richard Myers, HAIB dd243cbc9dc2e44b7d875a88b2924b17 https://www.encodeproject.org/files/ENCFF000PHI/@@download/ENCFF000PHI.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PHJ bigBed broadPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFS 1245792 Richard Myers, HAIB cdaa3c4f9a5c48ef8976dc380661e942 https://www.encodeproject.org/files/ENCFF000PHJ/@@download/ENCFF000PHJ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PHK bigBed broadPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFT 472677 Richard Myers, HAIB 2321f7c5cdf7e4827610c72796efd890 https://www.encodeproject.org/files/ENCFF000PHK/@@download/ENCFF000PHK.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PHL bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PHU 736764597 Richard Myers, HAIB 9b502f8afeba750f38cdf8d6fa1e9c8f https://www.encodeproject.org/files/ENCFF000PHL/@@download/ENCFF000PHL.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PHN bigWig raw signal ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 1 83047369 Richard Myers, HAIB 58727588d15f089f1c64af7277aad887 https://www.encodeproject.org/files/ENCFF000PHN/@@download/ENCFF000PHN.bigWig hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PHO bigWig raw signal ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 1 16863140 Richard Myers, HAIB f5755ea8b550ca7ad840b2c9878779bc https://www.encodeproject.org/files/ENCFF000PHO/@@download/ENCFF000PHO.bigWig hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PHU fastq reads ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 730877897 Richard Myers, HAIB e5a91c6566576b4a4bbc6876b96ed744 https://www.encodeproject.org/files/ENCFF000PHU/@@download/ENCFF000PHU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POH/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PIE fastq reads ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 2137911722 Richard Myers, HAIB c230b61b718ee46a331c1a5e7ef5c452 https://www.encodeproject.org/files/ENCFF000PIE/@@download/ENCFF000PIE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF001UFS bed broadPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 1 709890 Richard Myers, HAIB cc8e88ab4a1edf7f6c2598ee3b7f29cf https://www.encodeproject.org/files/ENCFF001UFS/@@download/ENCFF001UFS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UFT bed broadPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 1 277340 Richard Myers, HAIB 62ccec4cef6fac19fa88ab5041a89df1 https://www.encodeproject.org/files/ENCFF001UFT/@@download/ENCFF001UFT.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CKH bed narrowPeak optimal idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 630365 ENCODE Consortium Analysis Working Group dadb42dd9dc14b87216f6e61eb55680e https://www.encodeproject.org/files/ENCFF002CKH/@@download/ENCFF002CKH.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF654LDO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKH 1513295 ENCODE Consortium 0ef784bcc6cc3a1ce182b3760d38d998 https://www.encodeproject.org/files/ENCFF654LDO/@@download/ENCFF654LDO.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF953PCA bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHU, ENCFF643CGH 572730653 ENCODE Processing Pipeline cd368ed1e21594ced259d621f8b7f36c https://www.encodeproject.org/files/ENCFF953PCA/@@download/ENCFF953PCA.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF239IWS bam unfiltered alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHU, ENCFF643CGH 950029523 ENCODE Processing Pipeline b67229581dc4c227c5c941ae5b713c73 https://www.encodeproject.org/files/ENCFF239IWS/@@download/ENCFF239IWS.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF185DVY bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIE, ENCFF643CGH 1118691745 ENCODE Processing Pipeline 64d8770e8ee64aba620cf0062ac2fd79 https://www.encodeproject.org/files/ENCFF185DVY/@@download/ENCFF185DVY.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF080OMA bam unfiltered alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIE, ENCFF643CGH 2573531518 ENCODE Processing Pipeline bd4a19f2a5a3c0479b6215f5ddfe458b https://www.encodeproject.org/files/ENCFF080OMA/@@download/ENCFF080OMA.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF371RAV bam unfiltered alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHU, ENCFF807MUK 947025131 ENCODE Processing Pipeline ae1ff5e8f11b1c7be94949bc34a59281 https://www.encodeproject.org/files/ENCFF371RAV/@@download/ENCFF371RAV.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF763XIK bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHU, ENCFF807MUK 573112581 ENCODE Processing Pipeline abba2cd6a46df9f9d407be158382912e https://www.encodeproject.org/files/ENCFF763XIK/@@download/ENCFF763XIK.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF495TMD bam unfiltered alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIE, ENCFF807MUK 2567015045 ENCODE Processing Pipeline 504734c83390710e89a0a225496d04a0 https://www.encodeproject.org/files/ENCFF495TMD/@@download/ENCFF495TMD.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF015KCD bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIE, ENCFF807MUK 1119270721 ENCODE Processing Pipeline 8199ec0ca5deabe808f71a0354b709fb https://www.encodeproject.org/files/ENCFF015KCD/@@download/ENCFF015KCD.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF654CHW bigWig signal p-value ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF943DZB, ENCFF953PCA 520424697 ENCODE Processing Pipeline cbd58dc88f5156527de942bddb1e8080 https://www.encodeproject.org/files/ENCFF654CHW/@@download/ENCFF654CHW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF672WAO bigWig signal p-value ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185DVY, ENCFF193YIO, ENCFF943DZB 580510992 ENCODE Processing Pipeline cbb0175b853c70574f9bacee2c77052f https://www.encodeproject.org/files/ENCFF672WAO/@@download/ENCFF672WAO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF994BKW bigWig fold change over control ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF943DZB, ENCFF953PCA 370623230 ENCODE Processing Pipeline dae016977b23715b63c5578916709bce https://www.encodeproject.org/files/ENCFF994BKW/@@download/ENCFF994BKW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF655PGJ bigWig signal p-value ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185DVY, ENCFF193YIO, ENCFF943DZB, ENCFF953PCA 743617561 ENCODE Processing Pipeline 79622ab9cccd22a2ac278e1b79406054 https://www.encodeproject.org/files/ENCFF655PGJ/@@download/ENCFF655PGJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF630OJD bigWig fold change over control ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185DVY, ENCFF193YIO, ENCFF943DZB 531816146 ENCODE Processing Pipeline a31b0e4e3150d25976ac53eecdb3bb9e https://www.encodeproject.org/files/ENCFF630OJD/@@download/ENCFF630OJD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF155UGM bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185DVY, ENCFF193YIO, ENCFF943DZB 5807323 ENCODE Processing Pipeline 105fa7486f47865c2d00fea27ecd66e0 https://www.encodeproject.org/files/ENCFF155UGM/@@download/ENCFF155UGM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF651QYC bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185DVY, ENCFF193YIO, ENCFF943DZB, ENCFF953PCA 6347855 ENCODE Processing Pipeline 707ba18bd753ec3c4ef712c63b24f734 https://www.encodeproject.org/files/ENCFF651QYC/@@download/ENCFF651QYC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF858SNG bigWig fold change over control ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185DVY, ENCFF193YIO, ENCFF943DZB, ENCFF953PCA 731987193 ENCODE Processing Pipeline 55e9be8b77f11b668ab45d014ce99407 https://www.encodeproject.org/files/ENCFF858SNG/@@download/ENCFF858SNG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF475KOQ bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF943DZB, ENCFF953PCA 4652850 ENCODE Processing Pipeline f19b50011bf282d7336efb028f6f45a2 https://www.encodeproject.org/files/ENCFF475KOQ/@@download/ENCFF475KOQ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF821RQJ bigBed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF475KOQ 10852831 ENCODE Processing Pipeline a1781019657d6880d6c278669a3f36b6 https://www.encodeproject.org/files/ENCFF821RQJ/@@download/ENCFF821RQJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF630IDY bed narrowPeak conservative idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF155UGM, ENCFF419RSJ, ENCFF475KOQ, ENCFF651QYC 363592 ENCODE Processing Pipeline 573974795927471654cf0c74f704b19d https://www.encodeproject.org/files/ENCFF630IDY/@@download/ENCFF630IDY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF054ESU bed narrowPeak optimal idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF155UGM, ENCFF419RSJ, ENCFF475KOQ, ENCFF651QYC 532266 ENCODE Processing Pipeline 1ca84ed0fece336874b20ee78ed660ba https://www.encodeproject.org/files/ENCFF054ESU/@@download/ENCFF054ESU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF461JVX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF630IDY 709115 ENCODE Processing Pipeline 239dd2ca5d2b94d86b5eedecf2756d5f https://www.encodeproject.org/files/ENCFF461JVX/@@download/ENCFF461JVX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF613QAN bigBed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF155UGM 13122269 ENCODE Processing Pipeline 8630589e39120fa9762205c4f14d1ab8 https://www.encodeproject.org/files/ENCFF613QAN/@@download/ENCFF613QAN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF400GZN bigBed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651QYC 13566408 ENCODE Processing Pipeline 787ea3006b2dadcde3b7da21f3eb572c https://www.encodeproject.org/files/ENCFF400GZN/@@download/ENCFF400GZN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF057YZB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054ESU 926691 ENCODE Processing Pipeline 2a4c135ebf94c5732376cb027e4a018e https://www.encodeproject.org/files/ENCFF057YZB/@@download/ENCFF057YZB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF513JRV bigWig fold change over control ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV 530800339 ENCODE Processing Pipeline 43e66777b5be200f387a1ad82e24ed80 https://www.encodeproject.org/files/ENCFF513JRV/@@download/ENCFF513JRV.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF218ILF bigWig signal p-value ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV 703598266 ENCODE Processing Pipeline 1f1320f3bb3e1598d1c7af1cca250f30 https://www.encodeproject.org/files/ENCFF218ILF/@@download/ENCFF218ILF.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF908EGP bigBed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF620ZIR 13275856 ENCODE Processing Pipeline d90781ecc053bb75735c08a1098e9379 https://www.encodeproject.org/files/ENCFF908EGP/@@download/ENCFF908EGP.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF933WKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF395KPJ 923809 ENCODE Processing Pipeline 5891e317bfd2f2547d5130c03e6147d8 https://www.encodeproject.org/files/ENCFF933WKQ/@@download/ENCFF933WKQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF982DFL bigWig signal p-value ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 501365450 ENCODE Processing Pipeline 33f3dfd78150e7253510dbccfd4eab86 https://www.encodeproject.org/files/ENCFF982DFL/@@download/ENCFF982DFL.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF569LIJ bigWig signal p-value ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 866835848 ENCODE Processing Pipeline 5ac17ef9776b78c0edf91cf215cf2aa7 https://www.encodeproject.org/files/ENCFF569LIJ/@@download/ENCFF569LIJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF620ZIR bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV 5934827 ENCODE Processing Pipeline c34ac632ec2a669dc3f87f1e6b604948 https://www.encodeproject.org/files/ENCFF620ZIR/@@download/ENCFF620ZIR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF037QOS bigBed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF449NJO 10862285 ENCODE Processing Pipeline ecb9031fcf6c1bf786278c831a789ec3 https://www.encodeproject.org/files/ENCFF037QOS/@@download/ENCFF037QOS.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF365CIA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105NJB 708548 ENCODE Processing Pipeline 585a5f09d8978971ee5027705ce3f809 https://www.encodeproject.org/files/ENCFF365CIA/@@download/ENCFF365CIA.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF024JYK bigWig fold change over control ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 365656142 ENCODE Processing Pipeline 6a66627daff311b9a6144074cec79360 https://www.encodeproject.org/files/ENCFF024JYK/@@download/ENCFF024JYK.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF321KVH bigWig fold change over control ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 727267861 ENCODE Processing Pipeline db16b1ce3153ef64424e408f0a8a3104 https://www.encodeproject.org/files/ENCFF321KVH/@@download/ENCFF321KVH.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF449NJO bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 4667131 ENCODE Processing Pipeline 0797f59575ef5312ca61fdee9a90c048 https://www.encodeproject.org/files/ENCFF449NJO/@@download/ENCFF449NJO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF661ITW bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 6349387 ENCODE Processing Pipeline 4d28b2ab58f90e94047f852c690392b7 https://www.encodeproject.org/files/ENCFF661ITW/@@download/ENCFF661ITW.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF395KPJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF449NJO, ENCFF620ZIR, ENCFF661ITW 531483 ENCODE Processing Pipeline a2910e76c630f09cb73f1015633b84ff https://www.encodeproject.org/files/ENCFF395KPJ/@@download/ENCFF395KPJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF446QWM bigBed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF661ITW 13562987 ENCODE Processing Pipeline 857d3d15bd1a2e5f2180250963beed11 https://www.encodeproject.org/files/ENCFF446QWM/@@download/ENCFF446QWM.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF105NJB bed narrowPeak conservative idr thresholded peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF449NJO, ENCFF620ZIR, ENCFF661ITW 363436 ENCODE Processing Pipeline 54b6bb5b21e30810aa31f0a2164ba2d7 https://www.encodeproject.org/files/ENCFF105NJB/@@download/ENCFF105NJB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF236MNR bam unfiltered alignments ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF272HAB, ENCFF763GOA, ENCFF807MUK 3443504770 ENCODE Processing Pipeline ca6f5d10145015e18125dbc8dfd5b754 https://www.encodeproject.org/files/ENCFF236MNR/@@download/ENCFF236MNR.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF763GOA fastq reads ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF272HAB 1488052641 Michael Snyder, Stanford acc756a9526a1ce343834dbaa1fc3b50 SRA:SRR6214157 https://www.encodeproject.org/files/ENCFF763GOA/@@download/ENCFF763GOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF333IGR/ released control low read depth, low read depth, antibody characterized with exemption ENCFF272HAB fastq reads ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF763GOA 1490842163 Michael Snyder, Stanford 86d8e94c393656e96bad395fa9567f62 SRA:SRR6214157 https://www.encodeproject.org/files/ENCFF272HAB/@@download/ENCFF272HAB.fastq.gz Illumina HiSeq 2000 /files/ENCFF805UIJ/ released control low read depth, low read depth, antibody characterized with exemption ENCFF798GTB bam alignments ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF272HAB, ENCFF763GOA, ENCFF807MUK 2899375957 ENCODE Processing Pipeline a692ea3b6558fb8c62c67753f4b0fdc3 https://www.encodeproject.org/files/ENCFF798GTB/@@download/ENCFF798GTB.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF948BOJ bam unfiltered alignments ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF272HAB, ENCFF643CGH, ENCFF763GOA 3448981561 ENCODE Processing Pipeline 118af75fe1bbe221dbe0f12d8aa357f4 https://www.encodeproject.org/files/ENCFF948BOJ/@@download/ENCFF948BOJ.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF389LQB bam alignments ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF272HAB, ENCFF643CGH, ENCFF763GOA 2904310922 ENCODE Processing Pipeline 28da295559a25774e19a2874522e274a https://www.encodeproject.org/files/ENCFF389LQB/@@download/ENCFF389LQB.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF977BTX bed narrowPeak peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF570YAA, ENCFF798GTB 4414175 ENCODE Processing Pipeline 16859ac5f1427c0278c248fe73164ebb https://www.encodeproject.org/files/ENCFF977BTX/@@download/ENCFF977BTX.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF654DSQ bigWig signal p-value ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF570YAA, ENCFF798GTB 644666774 ENCODE Processing Pipeline e3d263b75f15811ab27ce8cf4c4b0bca https://www.encodeproject.org/files/ENCFF654DSQ/@@download/ENCFF654DSQ.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF887ZIX bigBed narrowPeak peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF977BTX 10912366 ENCODE Processing Pipeline c7ecfdf15e82566c8e69220da3e8d59d https://www.encodeproject.org/files/ENCFF887ZIX/@@download/ENCFF887ZIX.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF382QJG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF977BTX 14961 ENCODE Processing Pipeline a0f985889b00ee259406975fe14c926a https://www.encodeproject.org/files/ENCFF382QJG/@@download/ENCFF382QJG.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF261ZGD bigWig fold change over control ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF570YAA, ENCFF798GTB 632787576 ENCODE Processing Pipeline 09b40aa94705ee11a9b857256ccc7031 https://www.encodeproject.org/files/ENCFF261ZGD/@@download/ENCFF261ZGD.bigWig hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF611WAR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF382QJG 67556 ENCODE Processing Pipeline c852ad8a010e87f6fc80426d59630e25 https://www.encodeproject.org/files/ENCFF611WAR/@@download/ENCFF611WAR.bigBed hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF162PRX bed narrowPeak peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF389LQB, ENCFF752HGK 4420579 ENCODE Processing Pipeline a7b9357af44611afe0f8c72619845a50 https://www.encodeproject.org/files/ENCFF162PRX/@@download/ENCFF162PRX.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF946YRI bigWig fold change over control ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF389LQB, ENCFF752HGK 635361716 ENCODE Processing Pipeline 3521c61af2e1848f81828e3a9581a335 https://www.encodeproject.org/files/ENCFF946YRI/@@download/ENCFF946YRI.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF211VGU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF162PRX, ENCFF419RSJ 13944 ENCODE Processing Pipeline a76e6bc5fcdb41c6fbd12b81e68a145b https://www.encodeproject.org/files/ENCFF211VGU/@@download/ENCFF211VGU.bed.gz GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF382MEO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF211VGU 67096 ENCODE Processing Pipeline 7aad750182de53f01222c2ec27532f60 https://www.encodeproject.org/files/ENCFF382MEO/@@download/ENCFF382MEO.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF057RHA bigWig signal p-value ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF389LQB, ENCFF752HGK 646158621 ENCODE Processing Pipeline 8edf6084b165a879b728500a517c7447 https://www.encodeproject.org/files/ENCFF057RHA/@@download/ENCFF057RHA.bigWig GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF950VQO bigBed narrowPeak peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF162PRX 10940516 ENCODE Processing Pipeline bd9d82d376a140eafab7ab7401d548ba https://www.encodeproject.org/files/ENCFF950VQO/@@download/ENCFF950VQO.bigBed GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF000NKC bam alignments ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NKP 1266696504 Richard Myers, HAIB 03d2486ca6df5ec60e7fc09f6b351a71 https://www.encodeproject.org/files/ENCFF000NKC/@@download/ENCFF000NKC.bam hg19 released biological replicates with identical biosample ENCFF000NKD bam alignments ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NKQ 1338676227 Richard Myers, HAIB 9060d9729a5ff9e240509f2d32207aff https://www.encodeproject.org/files/ENCFF000NKD/@@download/ENCFF000NKD.bam hg19 released biological replicates with identical biosample ENCFF000NKE bigBed broadPeak peaks ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TUJ 133650 Richard Myers, HAIB 35da48b753a9de7930c001caaeb956d7 https://www.encodeproject.org/files/ENCFF000NKE/@@download/ENCFF000NKE.bigBed hg19 released biological replicates with identical biosample ENCFF000NKF bigBed broadPeak peaks ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TUK 264615 Richard Myers, HAIB 28a3be56095d78f7bd5ce0f9053d98ba https://www.encodeproject.org/files/ENCFF000NKF/@@download/ENCFF000NKF.bigBed hg19 released biological replicates with identical biosample ENCFF000NKI bigWig raw signal ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 128290316 Richard Myers, HAIB 3258c6b76d9d2a3c61f6bc12d0d04f2b https://www.encodeproject.org/files/ENCFF000NKI/@@download/ENCFF000NKI.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NKJ bigWig raw signal ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 154736761 Richard Myers, HAIB aa0185e4b5c1ee75ce62a7eadefd0013 https://www.encodeproject.org/files/ENCFF000NKJ/@@download/ENCFF000NKJ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NKP fastq reads ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1251437760 Richard Myers, HAIB 61553ed259f64a0a4d3282576df9c373 https://www.encodeproject.org/files/ENCFF000NKP/@@download/ENCFF000NKP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NKQ fastq reads ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1348163450 Richard Myers, HAIB cd58218e61490342054828e4b25bc992 https://www.encodeproject.org/files/ENCFF000NKQ/@@download/ENCFF000NKQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TUJ bed broadPeak peaks ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 49325 Richard Myers, HAIB 18403d83f28cc2d380d2837dce0fc0b8 https://www.encodeproject.org/files/ENCFF001TUJ/@@download/ENCFF001TUJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TUK bed broadPeak peaks ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 166517 Richard Myers, HAIB 08aea58e44961c31bd00458176f7807e https://www.encodeproject.org/files/ENCFF001TUK/@@download/ENCFF001TUK.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF501GVP fastq reads ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF590GNR 3017998315 Michael Snyder, Stanford 093f5f3d70d6516fe0a119acc98f27d8 SRA:SRR6213829 https://www.encodeproject.org/files/ENCFF501GVP/@@download/ENCFF501GVP.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released mild to moderate bottlenecking ENCFF875MPK fastq reads ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF477TYW 2293887246 Michael Snyder, Stanford c858bdd081cded111f027f9ec3f6aa88 SRA:SRR6213828 https://www.encodeproject.org/files/ENCFF875MPK/@@download/ENCFF875MPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released mild to moderate bottlenecking ENCFF477TYW fastq reads ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF875MPK 2326090234 Michael Snyder, Stanford c2179d6db0e77a3cffcf2b1496cca7de SRA:SRR6213828 https://www.encodeproject.org/files/ENCFF477TYW/@@download/ENCFF477TYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released mild to moderate bottlenecking ENCFF590GNR fastq reads ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF501GVP 3062510590 Michael Snyder, Stanford 3ea7ef1f4e3dcccbb087a80eb1663af3 SRA:SRR6213829 https://www.encodeproject.org/files/ENCFF590GNR/@@download/ENCFF590GNR.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released mild to moderate bottlenecking ENCFF816MDI bam unfiltered alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF477TYW, ENCFF643CGH, ENCFF875MPK 4947241575 ENCODE Processing Pipeline fb1e0ec08eca50928e8f8c743f00bdc5 https://www.encodeproject.org/files/ENCFF816MDI/@@download/ENCFF816MDI.bam GRCh38 released mild to moderate bottlenecking ENCFF045XLH bam unfiltered alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF501GVP, ENCFF590GNR, ENCFF643CGH 6429968323 ENCODE Processing Pipeline dbc292a85e35a44a5f3439d644090196 https://www.encodeproject.org/files/ENCFF045XLH/@@download/ENCFF045XLH.bam GRCh38 released mild to moderate bottlenecking ENCFF847WQB bam unfiltered alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF477TYW, ENCFF807MUK, ENCFF875MPK 4943176033 ENCODE Processing Pipeline 984c9847917b3b73c7c4bcd53645a260 https://www.encodeproject.org/files/ENCFF847WQB/@@download/ENCFF847WQB.bam hg19 released mild to moderate bottlenecking ENCFF860GRK bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF477TYW, ENCFF807MUK, ENCFF875MPK 3938035522 ENCODE Processing Pipeline 7b392fca049476ad3fd424e5c6352e96 https://www.encodeproject.org/files/ENCFF860GRK/@@download/ENCFF860GRK.bam hg19 released mild to moderate bottlenecking ENCFF772CXL bam unfiltered alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF501GVP, ENCFF590GNR, ENCFF807MUK 6424452637 ENCODE Processing Pipeline e835bf3089643114db9f33bbf448a65b https://www.encodeproject.org/files/ENCFF772CXL/@@download/ENCFF772CXL.bam hg19 released mild to moderate bottlenecking ENCFF670UAP bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF477TYW, ENCFF643CGH, ENCFF875MPK 3939726636 ENCODE Processing Pipeline 625f92ce431878cd1bf7694b0f2402cb https://www.encodeproject.org/files/ENCFF670UAP/@@download/ENCFF670UAP.bam GRCh38 released mild to moderate bottlenecking ENCFF207EXR bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF501GVP, ENCFF590GNR, ENCFF643CGH 5223935954 ENCODE Processing Pipeline 24b438290bd832ab3977a1bae6df1c06 https://www.encodeproject.org/files/ENCFF207EXR/@@download/ENCFF207EXR.bam GRCh38 released mild to moderate bottlenecking ENCFF100APY bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF501GVP, ENCFF590GNR, ENCFF807MUK 5221055577 ENCODE Processing Pipeline 09e816e2755557751b092d0030c16348 https://www.encodeproject.org/files/ENCFF100APY/@@download/ENCFF100APY.bam hg19 released mild to moderate bottlenecking ENCFF956UHF bigWig signal p-value ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 1199333446 ENCODE Processing Pipeline 79c1ca07d85aaf8a1263b0550adf377a https://www.encodeproject.org/files/ENCFF956UHF/@@download/ENCFF956UHF.bigWig hg19 released mild to moderate bottlenecking ENCFF398DKE bigWig fold change over control ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF100APY, ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 1859539891 ENCODE Processing Pipeline cd35f300db1d3fc55c07d4b568470bc6 https://www.encodeproject.org/files/ENCFF398DKE/@@download/ENCFF398DKE.bigWig hg19 released mild to moderate bottlenecking ENCFF823EJT bigBed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF723YNA 11450404 ENCODE Processing Pipeline 8db5bf9dd3e30631e7f6a1af811991b9 https://www.encodeproject.org/files/ENCFF823EJT/@@download/ENCFF823EJT.bigBed hg19 released mild to moderate bottlenecking ENCFF458KNY bigWig fold change over control ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF100APY, ENCFF262CJE, ENCFF506DFV 1417744362 ENCODE Processing Pipeline 39e6e7424b9f9f3cbe21ccfda87d9148 https://www.encodeproject.org/files/ENCFF458KNY/@@download/ENCFF458KNY.bigWig hg19 released mild to moderate bottlenecking ENCFF681RAS bigWig fold change over control ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 1212963969 ENCODE Processing Pipeline f017dd238cf2eecda71f9181abc37287 https://www.encodeproject.org/files/ENCFF681RAS/@@download/ENCFF681RAS.bigWig hg19 released mild to moderate bottlenecking ENCFF746UJW bigWig signal p-value ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF100APY, ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 1693251608 ENCODE Processing Pipeline a44168f07386673c45b51e2886853c86 https://www.encodeproject.org/files/ENCFF746UJW/@@download/ENCFF746UJW.bigWig hg19 released mild to moderate bottlenecking ENCFF723YNA bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 6358841 ENCODE Processing Pipeline 71f148421e311b84398fd8449b30f078 https://www.encodeproject.org/files/ENCFF723YNA/@@download/ENCFF723YNA.bed.gz hg19 released mild to moderate bottlenecking ENCFF611MDD bigBed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF341FSC 11389118 ENCODE Processing Pipeline b640cd9208f303d8842a825067fa30a7 https://www.encodeproject.org/files/ENCFF611MDD/@@download/ENCFF611MDD.bigBed hg19 released mild to moderate bottlenecking ENCFF022ETM bigBed narrowPeak conservative idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF339YXQ 1152357 ENCODE Processing Pipeline a48da1dd3b2d0ae6baa8e4cb428cb551 https://www.encodeproject.org/files/ENCFF022ETM/@@download/ENCFF022ETM.bigBed hg19 released mild to moderate bottlenecking ENCFF592ABS bigBed narrowPeak optimal idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF642BNC 1216545 ENCODE Processing Pipeline ab8a51d809644035c9a3235dfc010693 https://www.encodeproject.org/files/ENCFF592ABS/@@download/ENCFF592ABS.bigBed hg19 released mild to moderate bottlenecking ENCFF806CKZ bigWig signal p-value ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF100APY, ENCFF262CJE, ENCFF506DFV 1179278283 ENCODE Processing Pipeline 30f880f9bcbb05d4acd398e83248a6bd https://www.encodeproject.org/files/ENCFF806CKZ/@@download/ENCFF806CKZ.bigWig hg19 released mild to moderate bottlenecking ENCFF338XEA bigBed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF866VBI 11392659 ENCODE Processing Pipeline 0a263b76cb3723aa32ab5417e566d52b https://www.encodeproject.org/files/ENCFF338XEA/@@download/ENCFF338XEA.bigBed hg19 released mild to moderate bottlenecking ENCFF339YXQ bed narrowPeak conservative idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF341FSC, ENCFF723YNA, ENCFF866VBI 528680 ENCODE Processing Pipeline 465530fcb147810f3ba8c96e467899c4 https://www.encodeproject.org/files/ENCFF339YXQ/@@download/ENCFF339YXQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF866VBI bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF100APY, ENCFF262CJE, ENCFF506DFV 6718826 ENCODE Processing Pipeline 462aff753a325d16f959eb396e6e026a https://www.encodeproject.org/files/ENCFF866VBI/@@download/ENCFF866VBI.bed.gz hg19 released mild to moderate bottlenecking ENCFF341FSC bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF100APY, ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 7087517 ENCODE Processing Pipeline 6048b745d886d6bb1a9cbeb7a355c4f1 https://www.encodeproject.org/files/ENCFF341FSC/@@download/ENCFF341FSC.bed.gz hg19 released mild to moderate bottlenecking ENCFF642BNC bed narrowPeak optimal idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF341FSC, ENCFF723YNA, ENCFF866VBI 567549 ENCODE Processing Pipeline 9e6de62f30055b9cf52e5dfc02597efc https://www.encodeproject.org/files/ENCFF642BNC/@@download/ENCFF642BNC.bed.gz hg19 released mild to moderate bottlenecking ENCFF899FUT bigWig fold change over control ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF207EXR, ENCFF720AUK, ENCFF796JTX 1419093111 ENCODE Processing Pipeline d6f6e21487ae42bc6e64e1a51072cd2f https://www.encodeproject.org/files/ENCFF899FUT/@@download/ENCFF899FUT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF644WNC bigWig fold change over control ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF670UAP, ENCFF720AUK, ENCFF796JTX 1211597766 ENCODE Processing Pipeline fd5cb09482987accda7ab973df4f60b0 https://www.encodeproject.org/files/ENCFF644WNC/@@download/ENCFF644WNC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF119YZL bigWig fold change over control ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF207EXR, ENCFF670UAP, ENCFF720AUK, ENCFF796JTX 1858383625 ENCODE Processing Pipeline 789bf2ddc6f6f653897af87276396ec6 https://www.encodeproject.org/files/ENCFF119YZL/@@download/ENCFF119YZL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF799ZWN bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF207EXR, ENCFF720AUK, ENCFF796JTX 6725027 ENCODE Processing Pipeline c740eb9a2ee8d6fd1c70e4cfac6819f4 https://www.encodeproject.org/files/ENCFF799ZWN/@@download/ENCFF799ZWN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF543TNH bigWig signal p-value ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF670UAP, ENCFF720AUK, ENCFF796JTX 1222993366 ENCODE Processing Pipeline 252a7552c5af7b9a2c4b62517f745e69 https://www.encodeproject.org/files/ENCFF543TNH/@@download/ENCFF543TNH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF155CSO bigWig signal p-value ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF207EXR, ENCFF670UAP, ENCFF720AUK, ENCFF796JTX 1790329127 ENCODE Processing Pipeline 163fc9c3d61ee62c95bbef6267e2b674 https://www.encodeproject.org/files/ENCFF155CSO/@@download/ENCFF155CSO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF353QIM bigBed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF996YFG 11470911 ENCODE Processing Pipeline e27a33a7ce31e86a0455d37ce14ac59e https://www.encodeproject.org/files/ENCFF353QIM/@@download/ENCFF353QIM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF419PEK bed narrowPeak optimal idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF343XSY, ENCFF419RSJ, ENCFF799ZWN, ENCFF996YFG 577689 ENCODE Processing Pipeline 1036123880424ff327044007f80a51a2 https://www.encodeproject.org/files/ENCFF419PEK/@@download/ENCFF419PEK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF317SWK bed narrowPeak conservative idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF343XSY, ENCFF419RSJ, ENCFF799ZWN, ENCFF996YFG 530507 ENCODE Processing Pipeline baf2a3ec7f04c9fff9f2802d1231e58e https://www.encodeproject.org/files/ENCFF317SWK/@@download/ENCFF317SWK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF579NBB bigBed narrowPeak conservative idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF317SWK 1157934 ENCODE Processing Pipeline 4ca1c5c6287656bcc8fe30f79e408a51 https://www.encodeproject.org/files/ENCFF579NBB/@@download/ENCFF579NBB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF706LER bigBed narrowPeak optimal idr thresholded peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF419PEK 1235291 ENCODE Processing Pipeline b38255c683ab99c5635cc3a6fe12f113 https://www.encodeproject.org/files/ENCFF706LER/@@download/ENCFF706LER.bigBed GRCh38 released mild to moderate bottlenecking ENCFF996YFG bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF670UAP, ENCFF720AUK, ENCFF796JTX 6362072 ENCODE Processing Pipeline 552e696122104ddc685dd10a7be5afbd https://www.encodeproject.org/files/ENCFF996YFG/@@download/ENCFF996YFG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF343XSY bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF207EXR, ENCFF670UAP, ENCFF720AUK, ENCFF796JTX 7092036 ENCODE Processing Pipeline ef2a0f661f72f2954a5bd09342e6030d https://www.encodeproject.org/files/ENCFF343XSY/@@download/ENCFF343XSY.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF349LEO bigBed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF799ZWN 11411312 ENCODE Processing Pipeline 26610ff540fe06fdcc6729e73832378d https://www.encodeproject.org/files/ENCFF349LEO/@@download/ENCFF349LEO.bigBed GRCh38 released mild to moderate bottlenecking ENCFF914EDU bigBed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF343XSY 11406078 ENCODE Processing Pipeline ab8f344b5f809f9139c299e6472cfbed https://www.encodeproject.org/files/ENCFF914EDU/@@download/ENCFF914EDU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF112PQF bigWig signal p-value ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF207EXR, ENCFF720AUK, ENCFF796JTX 1262501191 ENCODE Processing Pipeline 3824f234cc466626d0c08e3c66aa4f34 https://www.encodeproject.org/files/ENCFF112PQF/@@download/ENCFF112PQF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF954DKT bam unfiltered alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 100 ENCFF183SXO, ENCFF806SEC, ENCFF807MUK 5404250016 ENCODE Processing Pipeline 938ffd2db36e6482f5b2ccb9479dcf18 https://www.encodeproject.org/files/ENCFF954DKT/@@download/ENCFF954DKT.bam hg19 released borderline replicate concordance ENCFF088QMG bam unfiltered alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 100 ENCFF527AMZ, ENCFF767SQO, ENCFF807MUK 4722020286 ENCODE Processing Pipeline 78b48c0628c78ac46e16d4e3463cdf74 https://www.encodeproject.org/files/ENCFF088QMG/@@download/ENCFF088QMG.bam hg19 released borderline replicate concordance ENCFF806SEC fastq reads ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF183SXO 2493391190 Michael Snyder, Stanford f77d116eaab205ec698e880c3e73af6d SRA:SRR5112255 https://www.encodeproject.org/files/ENCFF806SEC/@@download/ENCFF806SEC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF527AMZ fastq reads ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF767SQO 2166339669 Michael Snyder, Stanford 341e020b809edae114e1b106f3d4bf87 SRA:SRR5112254 https://www.encodeproject.org/files/ENCFF527AMZ/@@download/ENCFF527AMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF183SXO fastq reads ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF806SEC 2423162532 Michael Snyder, Stanford b9e47415854e6497ebc314c708c10bb5 SRA:SRR5112255 https://www.encodeproject.org/files/ENCFF183SXO/@@download/ENCFF183SXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF767SQO fastq reads ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF527AMZ 2107837422 Michael Snyder, Stanford 1357c478a2ea8c823ea3a9c765a470b6 SRA:SRR5112254 https://www.encodeproject.org/files/ENCFF767SQO/@@download/ENCFF767SQO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF368TVX bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 100 ENCFF527AMZ, ENCFF767SQO, ENCFF807MUK 3914290530 ENCODE Processing Pipeline 72c3cb7d489ceb1f052ae32fa9732dfc https://www.encodeproject.org/files/ENCFF368TVX/@@download/ENCFF368TVX.bam hg19 released borderline replicate concordance ENCFF564RWN bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 100 ENCFF183SXO, ENCFF806SEC, ENCFF807MUK 4499389901 ENCODE Processing Pipeline 9d7f0b8d2c9b12fac9d19d700bbde7f8 https://www.encodeproject.org/files/ENCFF564RWN/@@download/ENCFF564RWN.bam hg19 released borderline replicate concordance ENCFF293YBG bigWig signal p-value ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF368TVX, ENCFF583FAG 1104708310 ENCODE Processing Pipeline a26e36e73e948190d8a9e329b8660f02 https://www.encodeproject.org/files/ENCFF293YBG/@@download/ENCFF293YBG.bigWig hg19 released borderline replicate concordance ENCFF778ZCM bigWig fold change over control ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF368TVX, ENCFF583FAG 1001044232 ENCODE Processing Pipeline 7fb024ab4a9135f1be0ab4287ee24755 https://www.encodeproject.org/files/ENCFF778ZCM/@@download/ENCFF778ZCM.bigWig hg19 released borderline replicate concordance ENCFF331IGC bam unfiltered alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 100 ENCFF527AMZ, ENCFF643CGH, ENCFF767SQO 4729013111 ENCODE Processing Pipeline 9c46d9046a968754373ad3ad7c662fa4 https://www.encodeproject.org/files/ENCFF331IGC/@@download/ENCFF331IGC.bam GRCh38 released borderline replicate concordance ENCFF877QIF bam unfiltered alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 100 ENCFF183SXO, ENCFF643CGH, ENCFF806SEC 5412900539 ENCODE Processing Pipeline 6202dd199955c4e900d9d0e2c6913061 https://www.encodeproject.org/files/ENCFF877QIF/@@download/ENCFF877QIF.bam GRCh38 released borderline replicate concordance ENCFF650PQH bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 100 ENCFF183SXO, ENCFF643CGH, ENCFF806SEC 4506160587 ENCODE Processing Pipeline 894f93d0a6f545f174145e1766b3dd14 https://www.encodeproject.org/files/ENCFF650PQH/@@download/ENCFF650PQH.bam GRCh38 released borderline replicate concordance ENCFF061JUM bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 100 ENCFF527AMZ, ENCFF643CGH, ENCFF767SQO 3919022408 ENCODE Processing Pipeline a150ada08871a0387504b4ed67ba7a19 https://www.encodeproject.org/files/ENCFF061JUM/@@download/ENCFF061JUM.bam GRCh38 released borderline replicate concordance ENCFF186UOW bigWig signal p-value ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF061JUM, ENCFF426RDP 976435727 ENCODE Processing Pipeline 0fc949bf40c833fceb65c83bcde42a8a https://www.encodeproject.org/files/ENCFF186UOW/@@download/ENCFF186UOW.bigWig GRCh38 released borderline replicate concordance ENCFF838BTY bigWig signal p-value ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF650PQH 1099525619 ENCODE Processing Pipeline 59622591055eecd58c078b99fedd21d7 https://www.encodeproject.org/files/ENCFF838BTY/@@download/ENCFF838BTY.bigWig GRCh38 released borderline replicate concordance ENCFF363CAS bigWig signal p-value ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061JUM, ENCFF291AFY, ENCFF426RDP, ENCFF650PQH 2034529587 ENCODE Processing Pipeline e4b8d61f959d69631800ab66c2c5616f https://www.encodeproject.org/files/ENCFF363CAS/@@download/ENCFF363CAS.bigWig GRCh38 released borderline replicate concordance ENCFF945TOK bigWig fold change over control ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF061JUM, ENCFF426RDP 1007763957 ENCODE Processing Pipeline e6fb03b3002ffb6fe809aa7ffd3e9fab https://www.encodeproject.org/files/ENCFF945TOK/@@download/ENCFF945TOK.bigWig GRCh38 released borderline replicate concordance ENCFF985ARN bigWig fold change over control ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF650PQH 1161790609 ENCODE Processing Pipeline 7c8952264fba487737c549733a19dc16 https://www.encodeproject.org/files/ENCFF985ARN/@@download/ENCFF985ARN.bigWig GRCh38 released borderline replicate concordance ENCFF767COZ bigWig fold change over control ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061JUM, ENCFF291AFY, ENCFF426RDP, ENCFF650PQH 2030457009 ENCODE Processing Pipeline 8a1c1d903d77b3c06883ecb68e31edbf https://www.encodeproject.org/files/ENCFF767COZ/@@download/ENCFF767COZ.bigWig GRCh38 released borderline replicate concordance ENCFF919VYN bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF291AFY, ENCFF650PQH 5962717 ENCODE Processing Pipeline 7ef1c852449dce07d2306e6ece714235 https://www.encodeproject.org/files/ENCFF919VYN/@@download/ENCFF919VYN.bed.gz GRCh38 released borderline replicate concordance ENCFF147RDL bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF061JUM, ENCFF291AFY, ENCFF426RDP, ENCFF650PQH 6992635 ENCODE Processing Pipeline 439b6d0e5956f17e95f70c8911ed29a6 https://www.encodeproject.org/files/ENCFF147RDL/@@download/ENCFF147RDL.bed.gz GRCh38 released borderline replicate concordance ENCFF036NPE bigBed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF919VYN 11214014 ENCODE Processing Pipeline 6c1c37b613bac34b7b4d0ac1a067496a https://www.encodeproject.org/files/ENCFF036NPE/@@download/ENCFF036NPE.bigBed GRCh38 released borderline replicate concordance ENCFF403NET bigBed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF147RDL 11190131 ENCODE Processing Pipeline 9e9632c5597c73e6957d2866dc895dac https://www.encodeproject.org/files/ENCFF403NET/@@download/ENCFF403NET.bigBed GRCh38 released borderline replicate concordance ENCFF647TZD bed narrowPeak conservative idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF147RDL, ENCFF215EBP, ENCFF419RSJ, ENCFF919VYN 36117 ENCODE Processing Pipeline daf6a1fb43702dbdef638167cd48d7cf https://www.encodeproject.org/files/ENCFF647TZD/@@download/ENCFF647TZD.bed.gz GRCh38 released borderline replicate concordance ENCFF215EBP bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF061JUM, ENCFF426RDP 5663061 ENCODE Processing Pipeline 29ff7ce571b742690916722866c65e96 https://www.encodeproject.org/files/ENCFF215EBP/@@download/ENCFF215EBP.bed.gz GRCh38 released borderline replicate concordance ENCFF800CDQ bed narrowPeak optimal idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF147RDL, ENCFF215EBP, ENCFF419RSJ, ENCFF919VYN 76517 ENCODE Processing Pipeline 89af3c25db22c1daf39c0b22badfd330 https://www.encodeproject.org/files/ENCFF800CDQ/@@download/ENCFF800CDQ.bed.gz GRCh38 released borderline replicate concordance ENCFF826SOF bigBed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF215EBP 11217927 ENCODE Processing Pipeline 9ba3bae1c7eb109fd0f7fb2b9ad0caaa https://www.encodeproject.org/files/ENCFF826SOF/@@download/ENCFF826SOF.bigBed GRCh38 released borderline replicate concordance ENCFF189GUO bigBed narrowPeak conservative idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF647TZD 147709 ENCODE Processing Pipeline a9d187b3dba4ae0e1d531d4536db12a2 https://www.encodeproject.org/files/ENCFF189GUO/@@download/ENCFF189GUO.bigBed GRCh38 released borderline replicate concordance ENCFF091NKH bigBed narrowPeak optimal idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF800CDQ 195735 ENCODE Processing Pipeline 86af990ac8647d95e2b423c144814ec1 https://www.encodeproject.org/files/ENCFF091NKH/@@download/ENCFF091NKH.bigBed GRCh38 released borderline replicate concordance ENCFF030AOH bigWig signal p-value ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF564RWN 947869695 ENCODE Processing Pipeline ccaeb93c0a74a5c8809501235293bb85 https://www.encodeproject.org/files/ENCFF030AOH/@@download/ENCFF030AOH.bigWig hg19 released borderline replicate concordance ENCFF792AJV bigWig signal p-value ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF368TVX, ENCFF564RWN, ENCFF583FAG 1815631856 ENCODE Processing Pipeline 63ac5d44fb2a0673754b09144ba91b26 https://www.encodeproject.org/files/ENCFF792AJV/@@download/ENCFF792AJV.bigWig hg19 released borderline replicate concordance ENCFF384GLX bigBed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF540KAO 11196822 ENCODE Processing Pipeline 15b5444a318e126e621fdd56c89d9ffd https://www.encodeproject.org/files/ENCFF384GLX/@@download/ENCFF384GLX.bigBed hg19 released borderline replicate concordance ENCFF764NUY bigBed narrowPeak conservative idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF625CCL 120401 ENCODE Processing Pipeline c8b42b6a8d0bde79bbf6a5b18091cb71 https://www.encodeproject.org/files/ENCFF764NUY/@@download/ENCFF764NUY.bigBed hg19 released borderline replicate concordance ENCFF513CZF bigWig fold change over control ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF564RWN 1145776838 ENCODE Processing Pipeline ffd47a994536aad1abbf1144351b43c2 https://www.encodeproject.org/files/ENCFF513CZF/@@download/ENCFF513CZF.bigWig hg19 released borderline replicate concordance ENCFF638XZN bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF368TVX, ENCFF564RWN, ENCFF583FAG 6981174 ENCODE Processing Pipeline 245a115f75b81186273912ca32608846 https://www.encodeproject.org/files/ENCFF638XZN/@@download/ENCFF638XZN.bed.gz hg19 released borderline replicate concordance ENCFF404FMP bigWig fold change over control ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF368TVX, ENCFF564RWN, ENCFF583FAG 1995095461 ENCODE Processing Pipeline d2291897b53d173cc47f6804effe2865 https://www.encodeproject.org/files/ENCFF404FMP/@@download/ENCFF404FMP.bigWig hg19 released borderline replicate concordance ENCFF540KAO bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF564RWN 5952451 ENCODE Processing Pipeline d193db236e8f3bcdddf2ce2d30878ed8 https://www.encodeproject.org/files/ENCFF540KAO/@@download/ENCFF540KAO.bed.gz hg19 released borderline replicate concordance ENCFF303FWP bigBed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF812IYD 11197677 ENCODE Processing Pipeline b44f795b21d453deba59af88110f9849 https://www.encodeproject.org/files/ENCFF303FWP/@@download/ENCFF303FWP.bigBed hg19 released borderline replicate concordance ENCFF625CCL bed narrowPeak conservative idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF540KAO, ENCFF638XZN, ENCFF812IYD 32764 ENCODE Processing Pipeline 599e471ffd861e64b7539999eff1904b https://www.encodeproject.org/files/ENCFF625CCL/@@download/ENCFF625CCL.bed.gz hg19 released borderline replicate concordance ENCFF812IYD bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF368TVX, ENCFF583FAG 5657627 ENCODE Processing Pipeline 869a5b82e321ddc4bf20075abe81d92e https://www.encodeproject.org/files/ENCFF812IYD/@@download/ENCFF812IYD.bed.gz hg19 released borderline replicate concordance ENCFF916AZR bigBed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF638XZN 11172221 ENCODE Processing Pipeline ea36dc0873baa784919860969696480d https://www.encodeproject.org/files/ENCFF916AZR/@@download/ENCFF916AZR.bigBed hg19 released borderline replicate concordance ENCFF476URH bed narrowPeak optimal idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF540KAO, ENCFF638XZN, ENCFF812IYD 74111 ENCODE Processing Pipeline 48db844ee2c1805a2828a25d5793f6f0 https://www.encodeproject.org/files/ENCFF476URH/@@download/ENCFF476URH.bed.gz hg19 released borderline replicate concordance ENCFF830GWG bigBed narrowPeak optimal idr thresholded peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF476URH 188422 ENCODE Processing Pipeline 56fa3ada478e380c83a744a017924268 https://www.encodeproject.org/files/ENCFF830GWG/@@download/ENCFF830GWG.bigBed hg19 released borderline replicate concordance ENCFF000VTE bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 1 451223341 Michael Snyder, Stanford 8c81d8d4d47b03d2951d6177bbd5c67a https://www.encodeproject.org/files/ENCFF000VTE/@@download/ENCFF000VTE.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VTJ bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEA 1406524 Michael Snyder, Stanford 18e0456e96255c195ffdc42ce3fd6f59 https://www.encodeproject.org/files/ENCFF000VTJ/@@download/ENCFF000VTJ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VTK fastq reads ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 898934912 Michael Snyder, Stanford 4297a5629e61ed26b12608ae74151239 https://www.encodeproject.org/files/ENCFF000VTK/@@download/ENCFF000VTK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VTM fastq reads ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 780264511 Michael Snyder, Stanford 998460080520ef182867c15358e07ecc https://www.encodeproject.org/files/ENCFF000VTM/@@download/ENCFF000VTM.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VTO bigWig signal ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 355909046 Michael Snyder, Stanford 258aa98a810292c688ac757522550c73 https://www.encodeproject.org/files/ENCFF000VTO/@@download/ENCFF000VTO.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VTQ bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 1 470895138 Michael Snyder, Stanford c15eb4690495f220ace61f835817bc1d https://www.encodeproject.org/files/ENCFF000VTQ/@@download/ENCFF000VTQ.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VEA bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 562889 Michael Snyder, Stanford 5bcacfb808cf88352d15ed49ee006cca https://www.encodeproject.org/files/ENCFF001VEA/@@download/ENCFF001VEA.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CON bed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 175765 ENCODE Consortium Analysis Working Group 34f9cca27fb8070cd9c4c9072f031e0f https://www.encodeproject.org/files/ENCFF002CON/@@download/ENCFF002CON.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF265PSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CON 497170 ENCODE Consortium 96d001885633557aab8bbdd3ec02074d https://www.encodeproject.org/files/ENCFF265PSF/@@download/ENCFF265PSF.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF698OEZ bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF643CGH 801142261 ENCODE Processing Pipeline 2dac092c86e38f8cdfd0e68c3c3011cc https://www.encodeproject.org/files/ENCFF698OEZ/@@download/ENCFF698OEZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF701YQE bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF643CGH 905382192 ENCODE Processing Pipeline f714d09e25ff7078923bbc68e64feca4 https://www.encodeproject.org/files/ENCFF701YQE/@@download/ENCFF701YQE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF933NBT bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF643CGH 550630382 ENCODE Processing Pipeline 1db499aa41445b0590fcfa64e58c6ac9 https://www.encodeproject.org/files/ENCFF933NBT/@@download/ENCFF933NBT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065BQF bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF643CGH 518838233 ENCODE Processing Pipeline 865b6c73759c980a0ccd761dab89d86c https://www.encodeproject.org/files/ENCFF065BQF/@@download/ENCFF065BQF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF850KRW bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF807MUK 797854799 ENCODE Processing Pipeline a14a884f19dae5fa4ebe5f0cb83f9074 https://www.encodeproject.org/files/ENCFF850KRW/@@download/ENCFF850KRW.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF343GPD bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF807MUK 518807282 ENCODE Processing Pipeline 1282e387f1d2ef192c447a6c3c4881d4 https://www.encodeproject.org/files/ENCFF343GPD/@@download/ENCFF343GPD.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF560OFM bam unfiltered alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF807MUK 902167904 ENCODE Processing Pipeline 27ce3b26663ebe5b36021c8e04517893 https://www.encodeproject.org/files/ENCFF560OFM/@@download/ENCFF560OFM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF047BBR bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF807MUK 550298134 ENCODE Processing Pipeline 77c3b3318712735a957dd113d6fe6204 https://www.encodeproject.org/files/ENCFF047BBR/@@download/ENCFF047BBR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF057FSK bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 239286588 ENCODE Processing Pipeline bda0875eee8e8caad6440f429297ec68 https://www.encodeproject.org/files/ENCFF057FSK/@@download/ENCFF057FSK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF253RIV bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BQF, ENCFF477ZKJ 73789695 ENCODE Processing Pipeline 56bfdb7b3649b6bf16f9ca15b9e7e6a4 https://www.encodeproject.org/files/ENCFF253RIV/@@download/ENCFF253RIV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF069XPC bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BQF, ENCFF477ZKJ 3841623 ENCODE Processing Pipeline ba0bc46dd653ce1c83a96c61a451e4a4 https://www.encodeproject.org/files/ENCFF069XPC/@@download/ENCFF069XPC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF495ANY bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BQF, ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 4975825 ENCODE Processing Pipeline 935ad3fd6961cc22376e52f8c68b211b https://www.encodeproject.org/files/ENCFF495ANY/@@download/ENCFF495ANY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF062OIR bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BQF, ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 157831401 ENCODE Processing Pipeline f66734e0d850a6fb509da93f0590cb5d https://www.encodeproject.org/files/ENCFF062OIR/@@download/ENCFF062OIR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF322MQW bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BQF, ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 435924715 ENCODE Processing Pipeline 17e03989a651a2968e3928e34e47c793 https://www.encodeproject.org/files/ENCFF322MQW/@@download/ENCFF322MQW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF607KXD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF836XKX 321649 ENCODE Processing Pipeline 87aefc96f6ac59199fa56807ba05c89a https://www.encodeproject.org/files/ENCFF607KXD/@@download/ENCFF607KXD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285ZSS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF863CTN 444247 ENCODE Processing Pipeline dc76dbdc79738edadc3fd573d2dfedfe https://www.encodeproject.org/files/ENCFF285ZSS/@@download/ENCFF285ZSS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498ANJ bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF307SFD 10196722 ENCODE Processing Pipeline 1bc4a97f73551c6b9ac3843c68f9c568 https://www.encodeproject.org/files/ENCFF498ANJ/@@download/ENCFF498ANJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF836XKX bed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069XPC, ENCFF307SFD, ENCFF419RSJ, ENCFF495ANY 104491 ENCODE Processing Pipeline a433b266da122be8547fcc8d0e9b6ee4 https://www.encodeproject.org/files/ENCFF836XKX/@@download/ENCFF836XKX.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF126ZJE bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BQF, ENCFF477ZKJ 197850483 ENCODE Processing Pipeline e77bbfa5e3e1ae2871175eb8c2b0c738 https://www.encodeproject.org/files/ENCFF126ZJE/@@download/ENCFF126ZJE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF307SFD bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 4509410 ENCODE Processing Pipeline 6270c2145566b84be009bd2c11fbf488 https://www.encodeproject.org/files/ENCFF307SFD/@@download/ENCFF307SFD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF787JSJ bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF933NBT 168115704 ENCODE Processing Pipeline 9d081605a38daf55dbfffa9b6f1837ae https://www.encodeproject.org/files/ENCFF787JSJ/@@download/ENCFF787JSJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF133DTG bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF069XPC 9645942 ENCODE Processing Pipeline 85292457ce1011ea51a09f71266db863 https://www.encodeproject.org/files/ENCFF133DTG/@@download/ENCFF133DTG.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF179CKS bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF495ANY 13028663 ENCODE Processing Pipeline d18258dd5fd869f92f1de4f7342b893f https://www.encodeproject.org/files/ENCFF179CKS/@@download/ENCFF179CKS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF863CTN bed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069XPC, ENCFF307SFD, ENCFF419RSJ, ENCFF495ANY 165698 ENCODE Processing Pipeline 5ebd8271d1bcf979dfcda395ad16290f https://www.encodeproject.org/files/ENCFF863CTN/@@download/ENCFF863CTN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF530FHC bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047BBR, ENCFF110OHA, ENCFF343GPD, ENCFF545DZO 158988558 ENCODE Processing Pipeline d938e2475249bf1d073dfd6611870ebd https://www.encodeproject.org/files/ENCFF530FHC/@@download/ENCFF530FHC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF086IDD bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 199829785 ENCODE Processing Pipeline 0a4359c252f88a7e507d33a45e4214c6 https://www.encodeproject.org/files/ENCFF086IDD/@@download/ENCFF086IDD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF868POL bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HRI 9649583 ENCODE Processing Pipeline 119c5329f7d946b069634aec64ad2a7d https://www.encodeproject.org/files/ENCFF868POL/@@download/ENCFF868POL.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF058AIB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF924GMH 319769 ENCODE Processing Pipeline 6727b01654bc5ebc6627619510125efc https://www.encodeproject.org/files/ENCFF058AIB/@@download/ENCFF058AIB.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF273ULT bed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF136HKZ, ENCFF375HRI, ENCFF800PUH 174239 ENCODE Processing Pipeline cce4272ca16424b132c0f8a5bb7ad40f https://www.encodeproject.org/files/ENCFF273ULT/@@download/ENCFF273ULT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF177YDP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF273ULT 462513 ENCODE Processing Pipeline 287b56c12402e51e8c3192f6ea0d3821 https://www.encodeproject.org/files/ENCFF177YDP/@@download/ENCFF177YDP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF819EZZ bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 238641137 ENCODE Processing Pipeline 533db17c9e66f4c37a5624966a10468e https://www.encodeproject.org/files/ENCFF819EZZ/@@download/ENCFF819EZZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF136HKZ bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 4558146 ENCODE Processing Pipeline 3bb29edec50c3d5ead6524ef00531fc2 https://www.encodeproject.org/files/ENCFF136HKZ/@@download/ENCFF136HKZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375HRI bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 3843215 ENCODE Processing Pipeline c1ef6a2d148a9990c6f6a40e70d97e22 https://www.encodeproject.org/files/ENCFF375HRI/@@download/ENCFF375HRI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF800PUH bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047BBR, ENCFF110OHA, ENCFF343GPD, ENCFF545DZO 4982672 ENCODE Processing Pipeline 8f2e5abce60d73e97fac731163c281ca https://www.encodeproject.org/files/ENCFF800PUH/@@download/ENCFF800PUH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF405ZKS bigWig fold change over control ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047BBR, ENCFF110OHA, ENCFF343GPD, ENCFF545DZO 430751943 ENCODE Processing Pipeline f8251d389af016fed2a057d5c6af4dc8 https://www.encodeproject.org/files/ENCFF405ZKS/@@download/ENCFF405ZKS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF839AHQ bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF800PUH 13026349 ENCODE Processing Pipeline f3b1001131b9058ee8bd875867331ac7 https://www.encodeproject.org/files/ENCFF839AHQ/@@download/ENCFF839AHQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF924GMH bed narrowPeak conservative idr thresholded peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF136HKZ, ENCFF375HRI, ENCFF800PUH 103886 ENCODE Processing Pipeline 73d6dbe8ae4dec93a5c8aa630e0e94ed https://www.encodeproject.org/files/ENCFF924GMH/@@download/ENCFF924GMH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF294FCP bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 168045662 ENCODE Processing Pipeline 86df5a941f07973bcd7de05e6acf5f37 https://www.encodeproject.org/files/ENCFF294FCP/@@download/ENCFF294FCP.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF669NOV bigWig signal p-value ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 73887759 ENCODE Processing Pipeline 545dfef8c14d1c2ddfb5afa79b5a935b https://www.encodeproject.org/files/ENCFF669NOV/@@download/ENCFF669NOV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF121QSH bigBed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF136HKZ 10245090 ENCODE Processing Pipeline 249c71c14ea79a049ac43c1655bc7ec3 https://www.encodeproject.org/files/ENCFF121QSH/@@download/ENCFF121QSH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF177KGH fastq reads ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF225AAI 3534865452 Michael Snyder, Stanford 896ed31a5512a39b50ed18cb934b42d8 SRA:SRR6213051 https://www.encodeproject.org/files/ENCFF177KGH/@@download/ENCFF177KGH.fastq.gz Illumina HiSeq 4000 /files/ENCFF065VOB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF225AAI fastq reads ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF177KGH 4115327441 Michael Snyder, Stanford ba47e5a8b61528d2d62372f876fc4ba8 SRA:SRR6213051 https://www.encodeproject.org/files/ENCFF225AAI/@@download/ENCFF225AAI.fastq.gz Illumina HiSeq 4000 /files/ENCFF795HIW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF620MDY bam unfiltered alignments ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF177KGH, ENCFF225AAI, ENCFF807MUK 7270417727 ENCODE Processing Pipeline 0202678c243492d9e2f31ab7b62997c7 https://www.encodeproject.org/files/ENCFF620MDY/@@download/ENCFF620MDY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF872KVI bam unfiltered alignments ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF177KGH, ENCFF225AAI, ENCFF643CGH 7275423086 ENCODE Processing Pipeline 9db96452f348d268d7561c9d7f289a7b https://www.encodeproject.org/files/ENCFF872KVI/@@download/ENCFF872KVI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF119LQA bam alignments ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF177KGH, ENCFF225AAI, ENCFF807MUK 3162628389 ENCODE Processing Pipeline d4511a746b6c9164207e6f4e25182294 https://www.encodeproject.org/files/ENCFF119LQA/@@download/ENCFF119LQA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728KUF bam alignments ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF177KGH, ENCFF225AAI, ENCFF643CGH 3168187370 ENCODE Processing Pipeline 9bf742ec99b912f603081f795e7fb20a https://www.encodeproject.org/files/ENCFF728KUF/@@download/ENCFF728KUF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF778OTI bigWig signal p-value ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF728KUF 1366216230 ENCODE Processing Pipeline 047dea7d76a7198b79f213abec55ff45 https://www.encodeproject.org/files/ENCFF778OTI/@@download/ENCFF778OTI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF439AEB bigWig signal p-value ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF119LQA, ENCFF152VGP 1482255401 ENCODE Processing Pipeline 6c8d655a33115919f52ed61e24a9ce5d https://www.encodeproject.org/files/ENCFF439AEB/@@download/ENCFF439AEB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF916KUH bigWig fold change over control ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF728KUF 1456026880 ENCODE Processing Pipeline 2476688b7e7e1b63152dc49ce7dc3094 https://www.encodeproject.org/files/ENCFF916KUH/@@download/ENCFF916KUH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF607YLT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF872PLP 164055 ENCODE Processing Pipeline b5e11b95966e421236f54fb65b01f81b https://www.encodeproject.org/files/ENCFF607YLT/@@download/ENCFF607YLT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728WWJ bigWig fold change over control ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF119LQA, ENCFF152VGP 1427109977 ENCODE Processing Pipeline 940792331b4227e3bc92d704b137695c https://www.encodeproject.org/files/ENCFF728WWJ/@@download/ENCFF728WWJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF872PLP bed narrowPeak peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF136XMZ, ENCFF728KUF 6110107 ENCODE Processing Pipeline 9a4b1b49e924963f2e568a405992ac70 https://www.encodeproject.org/files/ENCFF872PLP/@@download/ENCFF872PLP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF614UCN bed narrowPeak peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF119LQA, ENCFF152VGP 6005626 ENCODE Processing Pipeline 0c00bcc1a3f8a1aa1054e0e4fb0dce9e https://www.encodeproject.org/files/ENCFF614UCN/@@download/ENCFF614UCN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF574NAG bigBed narrowPeak peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF872PLP 11530827 ENCODE Processing Pipeline 10faa09654bc959cc108617f8a3eca24 https://www.encodeproject.org/files/ENCFF574NAG/@@download/ENCFF574NAG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF952LSC bigBed narrowPeak peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF614UCN 11506486 ENCODE Processing Pipeline 61986a37f47fc3d33492df82c51320ed https://www.encodeproject.org/files/ENCFF952LSC/@@download/ENCFF952LSC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF034FDT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF607YLT 357767 ENCODE Processing Pipeline be20e665a73f196b3d5ca4d0e18b3d97 https://www.encodeproject.org/files/ENCFF034FDT/@@download/ENCFF034FDT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF469RRG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF433ZKP 366024 ENCODE Processing Pipeline 921c6ff1a1497a370b8fd8106fd63600 https://www.encodeproject.org/files/ENCFF469RRG/@@download/ENCFF469RRG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF433ZKP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF614UCN 170941 ENCODE Processing Pipeline 25457200bde75118e95300596c8a3724 https://www.encodeproject.org/files/ENCFF433ZKP/@@download/ENCFF433ZKP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000ODU bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OEH 731656869 Richard Myers, HAIB c8e9cde1ad0176fc164385ad1f189a6e https://www.encodeproject.org/files/ENCFF000ODU/@@download/ENCFF000ODU.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000ODW bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEJ 590891250 Richard Myers, HAIB ef0fe52eaccad234403083918b1e970b https://www.encodeproject.org/files/ENCFF000ODW/@@download/ENCFF000ODW.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000ODX bigBed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYT 203320 Richard Myers, HAIB 2fb9fc9ed05d85b84ce59e8bd0bf6649 https://www.encodeproject.org/files/ENCFF000ODX/@@download/ENCFF000ODX.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000ODY bigBed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYV 76081 Richard Myers, HAIB 8681f74ddea11145b668ac7a954d489d https://www.encodeproject.org/files/ENCFF000ODY/@@download/ENCFF000ODY.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OEA bigWig raw signal ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 27590744 Richard Myers, HAIB fb63b110521d63bfd5d23ca17b70d741 https://www.encodeproject.org/files/ENCFF000OEA/@@download/ENCFF000OEA.bigWig hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OEC bigWig raw signal ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 18467995 Richard Myers, HAIB a506c6e6c85db69119b0cf24ecd2ab15 https://www.encodeproject.org/files/ENCFF000OEC/@@download/ENCFF000OEC.bigWig hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OEH fastq reads ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1038753064 Richard Myers, HAIB a7d93cad13a08af91bc808ef76d06aed https://www.encodeproject.org/files/ENCFF000OEH/@@download/ENCFF000OEH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OEJ fastq reads ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 900997112 Richard Myers, HAIB f89d01328c034ae94344b564df407a91 https://www.encodeproject.org/files/ENCFF000OEJ/@@download/ENCFF000OEJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF001TYT bed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 83093 Richard Myers, HAIB 312b4cb00e08360a9fb4a8e4474e216e https://www.encodeproject.org/files/ENCFF001TYT/@@download/ENCFF001TYT.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF001TYV bed broadPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 18042 Richard Myers, HAIB ad01485e217f09133561735c2aee4cc9 https://www.encodeproject.org/files/ENCFF001TYV/@@download/ENCFF001TYV.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CHT bed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 33163 ENCODE Consortium Analysis Working Group 1fcda1bc2495dce47bb851030913fa90 https://www.encodeproject.org/files/ENCFF002CHT/@@download/ENCFF002CHT.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF213FVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHT 101374 ENCODE Consortium 1b1e634afa2111c79c48303237f90a8b https://www.encodeproject.org/files/ENCFF213FVH/@@download/ENCFF213FVH.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF125QGK bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF643CGH 1190051350 ENCODE Processing Pipeline fc6cb7cc9c23ce718333c17119d16500 https://www.encodeproject.org/files/ENCFF125QGK/@@download/ENCFF125QGK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF924KUA bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF643CGH 312666675 ENCODE Processing Pipeline becee3cd8be1c51e6cddb6b4ff03b0f3 https://www.encodeproject.org/files/ENCFF924KUA/@@download/ENCFF924KUA.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF292CKM bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF643CGH 1050720661 ENCODE Processing Pipeline e041817f4b62892a7be4015dab85ea27 https://www.encodeproject.org/files/ENCFF292CKM/@@download/ENCFF292CKM.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF713PKK bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF643CGH 293552376 ENCODE Processing Pipeline 816e373f120f913efa545f9fc345e6c1 https://www.encodeproject.org/files/ENCFF713PKK/@@download/ENCFF713PKK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF336YAA bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF807MUK 1188110824 ENCODE Processing Pipeline ff290c872a6786fd64cea99983c7245b https://www.encodeproject.org/files/ENCFF336YAA/@@download/ENCFF336YAA.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF532MNB bam unfiltered alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF807MUK 1049410986 ENCODE Processing Pipeline b993e51b9bf2ce85ffae395baf830a01 https://www.encodeproject.org/files/ENCFF532MNB/@@download/ENCFF532MNB.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF401FGJ bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF807MUK 289075969 ENCODE Processing Pipeline 02004b0f9bffa2df63ba58d145018e79 https://www.encodeproject.org/files/ENCFF401FGJ/@@download/ENCFF401FGJ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF488TFQ bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF807MUK 308022329 ENCODE Processing Pipeline 4259f9c32e7932259982651675d80c06 https://www.encodeproject.org/files/ENCFF488TFQ/@@download/ENCFF488TFQ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF453VRD bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF924KUA 383115919 ENCODE Processing Pipeline aa6945c6310dcd7be0848cebd55e1a9c https://www.encodeproject.org/files/ENCFF453VRD/@@download/ENCFF453VRD.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF637JVP bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF713PKK 382375516 ENCODE Processing Pipeline 9537e693d999e82fa47485933e7a87a8 https://www.encodeproject.org/files/ENCFF637JVP/@@download/ENCFF637JVP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF856MZL bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF713PKK, ENCFF924KUA 699866703 ENCODE Processing Pipeline 2a880180aaaccb03ac890aabdd6c83c7 https://www.encodeproject.org/files/ENCFF856MZL/@@download/ENCFF856MZL.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF560LZO bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF713PKK 169438222 ENCODE Processing Pipeline d8bbaec105f77463a8154f67089dcb34 https://www.encodeproject.org/files/ENCFF560LZO/@@download/ENCFF560LZO.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF337ECP bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF924KUA 180214423 ENCODE Processing Pipeline 8b5ffff7e965acadd78e099fb38c6994 https://www.encodeproject.org/files/ENCFF337ECP/@@download/ENCFF337ECP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF837EBB bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF713PKK 3557393 ENCODE Processing Pipeline 8984c72f1a10bc30be40b5830308c6e2 https://www.encodeproject.org/files/ENCFF837EBB/@@download/ENCFF837EBB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF090IZQ bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF924KUA 3463610 ENCODE Processing Pipeline 602a31e3a8a636578c49071c3ac81d9c https://www.encodeproject.org/files/ENCFF090IZQ/@@download/ENCFF090IZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF974EMV bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF837EBB 7570734 ENCODE Processing Pipeline 38ef46bfcc435313fb2079a66afd3678 https://www.encodeproject.org/files/ENCFF974EMV/@@download/ENCFF974EMV.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF951RXW bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF713PKK, ENCFF924KUA 433991399 ENCODE Processing Pipeline da5e95a00581576bf3f7e5b3121ebb4b https://www.encodeproject.org/files/ENCFF951RXW/@@download/ENCFF951RXW.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF604SNB bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF090IZQ 7545040 ENCODE Processing Pipeline d68f40ffb02584ca0860335e2fd9f59a https://www.encodeproject.org/files/ENCFF604SNB/@@download/ENCFF604SNB.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF727CUX bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF713PKK, ENCFF924KUA 4209212 ENCODE Processing Pipeline b290cfa31327f0070399db84c0d37770 https://www.encodeproject.org/files/ENCFF727CUX/@@download/ENCFF727CUX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF051NHQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF928YOZ 87728 ENCODE Processing Pipeline 0ee5cf546e322916edea4684fc8c6437 https://www.encodeproject.org/files/ENCFF051NHQ/@@download/ENCFF051NHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF782XCD bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF727CUX 10746620 ENCODE Processing Pipeline b13d43118479e08cd74095a2e634c976 https://www.encodeproject.org/files/ENCFF782XCD/@@download/ENCFF782XCD.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF928YOZ bed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF090IZQ, ENCFF419RSJ, ENCFF727CUX, ENCFF837EBB 25073 ENCODE Processing Pipeline 0c76d111b374f18a9349a1cbbd913dc6 https://www.encodeproject.org/files/ENCFF928YOZ/@@download/ENCFF928YOZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF044RBH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF313BDA 101193 ENCODE Processing Pipeline eee7685e2b5ec2123c12f188653eb671 https://www.encodeproject.org/files/ENCFF044RBH/@@download/ENCFF044RBH.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF313BDA bed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF090IZQ, ENCFF419RSJ, ENCFF727CUX, ENCFF837EBB 35116 ENCODE Processing Pipeline c3c963eb7159c35c5a9b3c3acd963fec https://www.encodeproject.org/files/ENCFF313BDA/@@download/ENCFF313BDA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF618NRW bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 433200223 ENCODE Processing Pipeline 09305d6dc2d092cc88efeea1c725140b https://www.encodeproject.org/files/ENCFF618NRW/@@download/ENCFF618NRW.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF689JTW bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 168973893 ENCODE Processing Pipeline 6f70da0e24e8fcdc8acf28be5c272afe https://www.encodeproject.org/files/ENCFF689JTW/@@download/ENCFF689JTW.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF487ZKN bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 180613637 ENCODE Processing Pipeline 85e6fb19f549110aacb0b4084ff99334 https://www.encodeproject.org/files/ENCFF487ZKN/@@download/ENCFF487ZKN.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF899EVQ bigWig fold change over control ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401FGJ, ENCFF488TFQ, ENCFF837IOW, ENCFF958RTR 443568251 ENCODE Processing Pipeline e147a0bb2153e211aa3a809523029a86 https://www.encodeproject.org/files/ENCFF899EVQ/@@download/ENCFF899EVQ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF951LSV bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 362570791 ENCODE Processing Pipeline 50d42a58bb15cb461da6eedff6295be4 https://www.encodeproject.org/files/ENCFF951LSV/@@download/ENCFF951LSV.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF381DTR bigWig signal p-value ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401FGJ, ENCFF488TFQ, ENCFF837IOW, ENCFF958RTR 707964927 ENCODE Processing Pipeline 31e7cdff4ac7a4ee7cea2e897eb52520 https://www.encodeproject.org/files/ENCFF381DTR/@@download/ENCFF381DTR.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF222RUB bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401FGJ, ENCFF488TFQ, ENCFF837IOW, ENCFF958RTR 4223083 ENCODE Processing Pipeline c60957f70a67428f5a4f24c98e561dda https://www.encodeproject.org/files/ENCFF222RUB/@@download/ENCFF222RUB.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF455MUC bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 3468731 ENCODE Processing Pipeline 66e5c23d8485c0e66c34c7276e574804 https://www.encodeproject.org/files/ENCFF455MUC/@@download/ENCFF455MUC.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF461FGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF222RUB, ENCFF455MUC, ENCFF595JYV 37777 ENCODE Processing Pipeline 47844d64dbbeff89ad267f2a4b329b58 https://www.encodeproject.org/files/ENCFF461FGJ/@@download/ENCFF461FGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF595JYV bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 3409558 ENCODE Processing Pipeline da26d58730ca7b31c63da318e70aa432 https://www.encodeproject.org/files/ENCFF595JYV/@@download/ENCFF595JYV.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF629PVL bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF595JYV 7351704 ENCODE Processing Pipeline f4d964132ee3d1c313eb19a33f28941b https://www.encodeproject.org/files/ENCFF629PVL/@@download/ENCFF629PVL.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF299YDM bed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF222RUB, ENCFF455MUC, ENCFF595JYV 19434 ENCODE Processing Pipeline 6a0b32f7f6924e910273f0f56f75a52d https://www.encodeproject.org/files/ENCFF299YDM/@@download/ENCFF299YDM.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF619JTE bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF455MUC 7235922 ENCODE Processing Pipeline 13f70f62f73e2e86360adbb3acb637ee https://www.encodeproject.org/files/ENCFF619JTE/@@download/ENCFF619JTE.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF443XRX bigBed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF222RUB 10766224 ENCODE Processing Pipeline 3bfc7f99027c884cb215321ac2ab5d28 https://www.encodeproject.org/files/ENCFF443XRX/@@download/ENCFF443XRX.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF587XVH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299YDM 82437 ENCODE Processing Pipeline f3e6d74d181e74a42d5583791be029aa https://www.encodeproject.org/files/ENCFF587XVH/@@download/ENCFF587XVH.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF413OPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF461FGJ 107252 ENCODE Processing Pipeline ce57c2611b4343ed7afe66fda973709a https://www.encodeproject.org/files/ENCFF413OPL/@@download/ENCFF413OPL.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NJF bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NJU 129490991 Richard Myers, HAIB 803067dfa24dc11ec3fba49dea814efe https://www.encodeproject.org/files/ENCFF000NJF/@@download/ENCFF000NJF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000NJG bigBed broadPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TUD 548744 Richard Myers, HAIB 4a9b7c0df9f20e925b0afe113381e4bf https://www.encodeproject.org/files/ENCFF000NJG/@@download/ENCFF000NJG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000NJH bigBed broadPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TUE 186169 Richard Myers, HAIB 8937fb39a9cbdbe35d0b513766368d0d https://www.encodeproject.org/files/ENCFF000NJH/@@download/ENCFF000NJH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000NJI bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NJS 2084764597 Richard Myers, HAIB 6b81bc9541ce061b4f2bcddb1839cc78 https://www.encodeproject.org/files/ENCFF000NJI/@@download/ENCFF000NJI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000NJJ bigWig raw signal ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 1 43527645 Richard Myers, HAIB e5b2a89fee4ec8771e3cdacedf7d33ba https://www.encodeproject.org/files/ENCFF000NJJ/@@download/ENCFF000NJJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000NJK bigWig raw signal ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 1 14630718 Richard Myers, HAIB 5b2b0a3264d9cb24f9c51c862b5988b4 https://www.encodeproject.org/files/ENCFF000NJK/@@download/ENCFF000NJK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000NJS fastq reads ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1804476022 Richard Myers, HAIB 480fb988341ea280eb4d92489d1b67f1 https://www.encodeproject.org/files/ENCFF000NJS/@@download/ENCFF000NJS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000NJU fastq reads ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1622656096 Richard Myers, HAIB 404485b39ed58af5dc64ece9d250416c https://www.encodeproject.org/files/ENCFF000NJU/@@download/ENCFF000NJU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF001TUD bed broadPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 1 321489 Richard Myers, HAIB 59647b9253b5d8539aca73d30dfa9555 https://www.encodeproject.org/files/ENCFF001TUD/@@download/ENCFF001TUD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001TUE bed broadPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 1 85051 Richard Myers, HAIB c3893245c7e5651c2b8259ec4f0da46e https://www.encodeproject.org/files/ENCFF001TUE/@@download/ENCFF001TUE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CGF bed narrowPeak optimal idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 225823 ENCODE Consortium Analysis Working Group 08d661b252ca4942d8a9c8bdb11857de https://www.encodeproject.org/files/ENCFF002CGF/@@download/ENCFF002CGF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF067HJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGF 541022 ENCODE Consortium ce026bbd48b0f50c33647338b0f68d3a https://www.encodeproject.org/files/ENCFF067HJE/@@download/ENCFF067HJE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF520AQZ bam unfiltered alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NJU, ENCFF643CGH 1753030638 ENCODE Processing Pipeline 7e9f102df4fd5d445e601c5ff730fdf5 https://www.encodeproject.org/files/ENCFF520AQZ/@@download/ENCFF520AQZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF190FDQ bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NJU, ENCFF643CGH 824269561 ENCODE Processing Pipeline e8ef345b7109829d43c88b66a0a33c41 https://www.encodeproject.org/files/ENCFF190FDQ/@@download/ENCFF190FDQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF721NZQ bam unfiltered alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NJS, ENCFF643CGH 2146633373 ENCODE Processing Pipeline 8083924119001c652d95e122a9dca07b https://www.encodeproject.org/files/ENCFF721NZQ/@@download/ENCFF721NZQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF576DWG bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NJS, ENCFF643CGH 990733132 ENCODE Processing Pipeline 7ab5a58586b3e40368d1bd88de7b6f8d https://www.encodeproject.org/files/ENCFF576DWG/@@download/ENCFF576DWG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF573CMH bam unfiltered alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NJU, ENCFF807MUK 1747303892 ENCODE Processing Pipeline 111918fddef949efe28edab083d0c4bb https://www.encodeproject.org/files/ENCFF573CMH/@@download/ENCFF573CMH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF028JOY bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NJU, ENCFF807MUK 824227963 ENCODE Processing Pipeline 3e83bc855f64a17ff9c98d494cd318f9 https://www.encodeproject.org/files/ENCFF028JOY/@@download/ENCFF028JOY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF285GPL bam unfiltered alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NJS, ENCFF807MUK 2139843836 ENCODE Processing Pipeline 5114840677008c065f3c7ef813d87fbf https://www.encodeproject.org/files/ENCFF285GPL/@@download/ENCFF285GPL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF664NJN bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NJS, ENCFF807MUK 990879313 ENCODE Processing Pipeline 6dd30c113e14d0c2bf795961e6408892 https://www.encodeproject.org/files/ENCFF664NJN/@@download/ENCFF664NJN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF628USZ bigWig signal p-value ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF576DWG 696833626 ENCODE Processing Pipeline ecab347e94b175526c3046b3b52b77b7 https://www.encodeproject.org/files/ENCFF628USZ/@@download/ENCFF628USZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF054JBA bigWig signal p-value ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF190FDQ 554307517 ENCODE Processing Pipeline edecc299fc2f8be5bc04df9969937780 https://www.encodeproject.org/files/ENCFF054JBA/@@download/ENCFF054JBA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF807JVF bigWig signal p-value ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF190FDQ, ENCFF576DWG 838001939 ENCODE Processing Pipeline fe1370947e5b72bddb71691c7fbb2bf0 https://www.encodeproject.org/files/ENCFF807JVF/@@download/ENCFF807JVF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF679UAG bigWig fold change over control ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF576DWG 533575404 ENCODE Processing Pipeline f731014a07bcdbcbfbe5d661ad1104ea https://www.encodeproject.org/files/ENCFF679UAG/@@download/ENCFF679UAG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF074YBF bigWig fold change over control ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF190FDQ 429292100 ENCODE Processing Pipeline 6523e7b09058282b8290258c9d4460cd https://www.encodeproject.org/files/ENCFF074YBF/@@download/ENCFF074YBF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF882FLP bigWig fold change over control ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF190FDQ, ENCFF576DWG 815881280 ENCODE Processing Pipeline 59e97c718eebb26f97473401c4755999 https://www.encodeproject.org/files/ENCFF882FLP/@@download/ENCFF882FLP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF277ALQ bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF576DWG 6557580 ENCODE Processing Pipeline f5f517121defd173a9c536b0d7a2f453 https://www.encodeproject.org/files/ENCFF277ALQ/@@download/ENCFF277ALQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF541HVC bigBed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF243GJY 13326902 ENCODE Processing Pipeline 40fc26a8302b3186c6934a1bfb474875 https://www.encodeproject.org/files/ENCFF541HVC/@@download/ENCFF541HVC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF243GJY bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF190FDQ 5782532 ENCODE Processing Pipeline 77b3e455e9a6bdcff34817a34e93e8bb https://www.encodeproject.org/files/ENCFF243GJY/@@download/ENCFF243GJY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF809KZO bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF190FDQ, ENCFF576DWG 6749496 ENCODE Processing Pipeline 8ba0df70e8c2b79a9667f0a97ae2e22d https://www.encodeproject.org/files/ENCFF809KZO/@@download/ENCFF809KZO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF813RFS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF993AAD 521993 ENCODE Processing Pipeline 39a776f4dfa245e09ac19e074b8b096f https://www.encodeproject.org/files/ENCFF813RFS/@@download/ENCFF813RFS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF645RJC bigBed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF277ALQ 12944197 ENCODE Processing Pipeline d765195e016e1c6c051c8c8076968d8c https://www.encodeproject.org/files/ENCFF645RJC/@@download/ENCFF645RJC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF385AQS bigBed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF809KZO 13094078 ENCODE Processing Pipeline a1817339cfacc67873a62d212b4af6c1 https://www.encodeproject.org/files/ENCFF385AQS/@@download/ENCFF385AQS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF686JFS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF613DTQ 664186 ENCODE Processing Pipeline 0afa377947f1814c14302621c34165a6 https://www.encodeproject.org/files/ENCFF686JFS/@@download/ENCFF686JFS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF993AAD bed narrowPeak conservative idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF243GJY, ENCFF277ALQ, ENCFF419RSJ, ENCFF809KZO 216095 ENCODE Processing Pipeline 636efedc5b8a05818544508279b04895 https://www.encodeproject.org/files/ENCFF993AAD/@@download/ENCFF993AAD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF613DTQ bed narrowPeak optimal idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF243GJY, ENCFF277ALQ, ENCFF419RSJ, ENCFF809KZO 301674 ENCODE Processing Pipeline 6766d9ba9edfc71882e12b451d9f8763 https://www.encodeproject.org/files/ENCFF613DTQ/@@download/ENCFF613DTQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF825SPS bigWig signal p-value ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF664NJN, ENCFF864UEQ 733207882 ENCODE Processing Pipeline 39dab54a16ddca204f6439646b509744 https://www.encodeproject.org/files/ENCFF825SPS/@@download/ENCFF825SPS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF085ITE bigWig fold change over control ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF664NJN, ENCFF864UEQ 536935101 ENCODE Processing Pipeline 5187499c64f7ef868a211ffd34b7e095 https://www.encodeproject.org/files/ENCFF085ITE/@@download/ENCFF085ITE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF859YZV bigWig signal p-value ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF028JOY, ENCFF864UEQ 541213675 ENCODE Processing Pipeline e795c5070a73a9b70353b27a499ce11c https://www.encodeproject.org/files/ENCFF859YZV/@@download/ENCFF859YZV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF151HNC bigWig fold change over control ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF028JOY, ENCFF864UEQ 434708988 ENCODE Processing Pipeline ed75082b32d36099842cee24d7ed7417 https://www.encodeproject.org/files/ENCFF151HNC/@@download/ENCFF151HNC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF434YLI bigWig signal p-value ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF028JOY, ENCFF664NJN, ENCFF864UEQ 857902759 ENCODE Processing Pipeline ec212a0f15261a96c984ad0c4a109ebd https://www.encodeproject.org/files/ENCFF434YLI/@@download/ENCFF434YLI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF845YAV bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF664NJN, ENCFF864UEQ 6556130 ENCODE Processing Pipeline 79a717fc5f099cde1689cb817eef3c8f https://www.encodeproject.org/files/ENCFF845YAV/@@download/ENCFF845YAV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF238BWB bigWig fold change over control ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF028JOY, ENCFF664NJN, ENCFF864UEQ 840367627 ENCODE Processing Pipeline b6e0509f248255c6ce344969061d7807 https://www.encodeproject.org/files/ENCFF238BWB/@@download/ENCFF238BWB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF356GTP bed narrowPeak conservative idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF515CEL, ENCFF697EFZ, ENCFF845YAV 215916 ENCODE Processing Pipeline ea9cab82b163fc4314ada5eb3b3c9aeb https://www.encodeproject.org/files/ENCFF356GTP/@@download/ENCFF356GTP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF515CEL bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF028JOY, ENCFF664NJN, ENCFF864UEQ 6747047 ENCODE Processing Pipeline 5fc44568d3512cb30b2aec8920f90fb5 https://www.encodeproject.org/files/ENCFF515CEL/@@download/ENCFF515CEL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF962NKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF713ISJ 663932 ENCODE Processing Pipeline 6dee26464e6f822c0087ed97cfabc57c https://www.encodeproject.org/files/ENCFF962NKQ/@@download/ENCFF962NKQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF840DVS bigBed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF845YAV 12941724 ENCODE Processing Pipeline d9658f77df3215c2821614d446150e31 https://www.encodeproject.org/files/ENCFF840DVS/@@download/ENCFF840DVS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF838EAE bigBed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF697EFZ 13322012 ENCODE Processing Pipeline 49ea5f02ae38d7d42f171525d706af5e https://www.encodeproject.org/files/ENCFF838EAE/@@download/ENCFF838EAE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF713ISJ bed narrowPeak optimal idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF515CEL, ENCFF697EFZ, ENCFF845YAV 301323 ENCODE Processing Pipeline e4881f3221759f989a49836abc46b388 https://www.encodeproject.org/files/ENCFF713ISJ/@@download/ENCFF713ISJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF697EFZ bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF028JOY, ENCFF864UEQ 5816738 ENCODE Processing Pipeline 01ffbdbf4f6cbb48395de1272c617067 https://www.encodeproject.org/files/ENCFF697EFZ/@@download/ENCFF697EFZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF339TFM bigBed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF515CEL 13090640 ENCODE Processing Pipeline f430c4d7a71914e8018520ac39d40254 https://www.encodeproject.org/files/ENCFF339TFM/@@download/ENCFF339TFM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF534SKN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF356GTP 521296 ENCODE Processing Pipeline 1aae9965b1957e6387caf0a65123572a https://www.encodeproject.org/files/ENCFF534SKN/@@download/ENCFF534SKN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000ZNM bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQP 160489 Peggy Farnham, USC 0e8b1e5a237c4a7cbc4f2563410b4060 https://www.encodeproject.org/files/ENCFF000ZNM/@@download/ENCFF000ZNM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZNN bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZOH 454484557 Peggy Farnham, USC 92bf1fac5307b47df1afcaac4efdedca https://www.encodeproject.org/files/ENCFF000ZNN/@@download/ENCFF000ZNN.bam hg19 /files/ENCFF000VJV/, /files/ENCFF000ZNE/ archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZNO bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZOI 537702407 Peggy Farnham, USC 201c5f2924a88f92f796635d4397c850 https://www.encodeproject.org/files/ENCFF000ZNO/@@download/ENCFF000ZNO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZNP bigWig signal ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 352666522 Peggy Farnham, USC 4a2f1bee56ac90cf056236a42aa964d5 https://www.encodeproject.org/files/ENCFF000ZNP/@@download/ENCFF000ZNP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000ZOH fastq reads ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1136711867 Peggy Farnham, USC 291c27e16885058b144d56308a627412 https://www.encodeproject.org/files/ENCFF000ZOH/@@download/ENCFF000ZOH.fastq.gz Illumina Genome Analyzer /files/ENCFF000VJV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000ZOI fastq reads ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 2093797917 Peggy Farnham, USC 6f30b7d8a4bf00a5bafa32a781de5261 https://www.encodeproject.org/files/ENCFF000ZOI/@@download/ENCFF000ZOI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VJV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF001VQP bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 44861 Peggy Farnham, USC a62018a55b39b6ead0dd3764b86f7b15 https://www.encodeproject.org/files/ENCFF001VQP/@@download/ENCFF001VQP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CZT bed narrowPeak optimal idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 17080 ENCODE Consortium Analysis Working Group 57fb678cb81a0cb0bc0cd4329ecf7308 https://www.encodeproject.org/files/ENCFF002CZT/@@download/ENCFF002CZT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF529JCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZT 124359 ENCODE Consortium 45d4cd604fe40858970e09b393d2a9c8 https://www.encodeproject.org/files/ENCFF529JCQ/@@download/ENCFF529JCQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF884VDX bam unfiltered alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOH, ENCFF643CGH 1338671488 ENCODE Processing Pipeline 8949fbf2e99673a5f9274f539a342870 https://www.encodeproject.org/files/ENCFF884VDX/@@download/ENCFF884VDX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF760JXY bam unfiltered alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOH, ENCFF807MUK 1334469012 ENCODE Processing Pipeline 47c63c58dfa66ff530ed30f080a36c99 https://www.encodeproject.org/files/ENCFF760JXY/@@download/ENCFF760JXY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF797JLC bam unfiltered alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOI, ENCFF643CGH 2360252848 ENCODE Processing Pipeline 5d61595f24049e90c3b7911ad73a0782 https://www.encodeproject.org/files/ENCFF797JLC/@@download/ENCFF797JLC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF412VVG bam unfiltered alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOI, ENCFF807MUK 2349999722 ENCODE Processing Pipeline 6eb2719998373fd561bd9deefb7d9add https://www.encodeproject.org/files/ENCFF412VVG/@@download/ENCFF412VVG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF218VQI bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOH, ENCFF643CGH 708738292 ENCODE Processing Pipeline 8da8024ad683fcb8471d8c7b3ac08a42 https://www.encodeproject.org/files/ENCFF218VQI/@@download/ENCFF218VQI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF051QXN bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOI, ENCFF807MUK 1151726408 ENCODE Processing Pipeline c36660b42bd2af32d41c0ae1a23c89f3 https://www.encodeproject.org/files/ENCFF051QXN/@@download/ENCFF051QXN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF863SME bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOH, ENCFF807MUK 709454701 ENCODE Processing Pipeline 1eb18431fde50fe184d4cf95b8356c23 https://www.encodeproject.org/files/ENCFF863SME/@@download/ENCFF863SME.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF267AMC bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOI, ENCFF643CGH 1151134101 ENCODE Processing Pipeline 5b2449b8aa1907d3fbb9db7d45db451a https://www.encodeproject.org/files/ENCFF267AMC/@@download/ENCFF267AMC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF893DMY bigWig signal p-value ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051QXN, ENCFF205KMO 664714661 ENCODE Processing Pipeline aad044c1313bfecaea2d93b79c1a1336 https://www.encodeproject.org/files/ENCFF893DMY/@@download/ENCFF893DMY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF680BPU bigWig signal p-value ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051QXN, ENCFF205KMO, ENCFF863SME 836920723 ENCODE Processing Pipeline 861e666ac020484e6b9a92ed57deea27 https://www.encodeproject.org/files/ENCFF680BPU/@@download/ENCFF680BPU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF163PNS bigWig signal p-value ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF863SME 716841975 ENCODE Processing Pipeline 8ff66204c06a345b3a187fd540f6f56c https://www.encodeproject.org/files/ENCFF163PNS/@@download/ENCFF163PNS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF289FPV bigWig fold change over control ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF863SME 524322686 ENCODE Processing Pipeline c184b96057b53f6f7f45dabbea3b9020 https://www.encodeproject.org/files/ENCFF289FPV/@@download/ENCFF289FPV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF423YRQ bigWig signal p-value ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF267AMC, ENCFF293DEQ 787308687 ENCODE Processing Pipeline 47939cecf0f2531b2d559f3a641efbb7 https://www.encodeproject.org/files/ENCFF423YRQ/@@download/ENCFF423YRQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF070CWU bigWig signal p-value ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF218VQI, ENCFF293DEQ 664651502 ENCODE Processing Pipeline 40ef0c54e715395e7eaca299f319f976 https://www.encodeproject.org/files/ENCFF070CWU/@@download/ENCFF070CWU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF556KWF bigWig fold change over control ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051QXN, ENCFF205KMO 703683980 ENCODE Processing Pipeline dd2e7cbf79a7f6ea12888408dc650424 https://www.encodeproject.org/files/ENCFF556KWF/@@download/ENCFF556KWF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF039WGL bigWig fold change over control ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051QXN, ENCFF205KMO, ENCFF863SME 916912788 ENCODE Processing Pipeline 012b6a7b88300e77a5eb7ffad3135576 https://www.encodeproject.org/files/ENCFF039WGL/@@download/ENCFF039WGL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF794GZT bigWig signal p-value ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF218VQI, ENCFF267AMC, ENCFF293DEQ 866017934 ENCODE Processing Pipeline 66aa2b76d761a8a07231d5372aad9e19 https://www.encodeproject.org/files/ENCFF794GZT/@@download/ENCFF794GZT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF237BUA bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051QXN, ENCFF205KMO, ENCFF863SME 7204021 ENCODE Processing Pipeline 9ef1302f8fa58c213a32d73dbfcdeb1a https://www.encodeproject.org/files/ENCFF237BUA/@@download/ENCFF237BUA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF562GZU bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF863SME 6262776 ENCODE Processing Pipeline e685eefb70eb7e0dad36efe49485b5d8 https://www.encodeproject.org/files/ENCFF562GZU/@@download/ENCFF562GZU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF115UES bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF562GZU 13223013 ENCODE Processing Pipeline 7862163f12d00d3cb0c3923899d7a8a5 https://www.encodeproject.org/files/ENCFF115UES/@@download/ENCFF115UES.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF715NVD bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051QXN, ENCFF205KMO 6402540 ENCODE Processing Pipeline 83c5f44ea3a46ca43b1c3c591f644c11 https://www.encodeproject.org/files/ENCFF715NVD/@@download/ENCFF715NVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF211RUV bigWig fold change over control ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF218VQI, ENCFF293DEQ 524156585 ENCODE Processing Pipeline 62a3b71878e5136bfce693203516e41b https://www.encodeproject.org/files/ENCFF211RUV/@@download/ENCFF211RUV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF611KNK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF637LOO 118829 ENCODE Processing Pipeline 619fe5bd05b567e9d693f00e9255b3a0 https://www.encodeproject.org/files/ENCFF611KNK/@@download/ENCFF611KNK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF637LOO bed narrowPeak conservative idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF237BUA, ENCFF562GZU, ENCFF715NVD 22767 ENCODE Processing Pipeline 89f4206ef56032d2a4d5725cbc84d360 https://www.encodeproject.org/files/ENCFF637LOO/@@download/ENCFF637LOO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF039BVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF102VYH 122223 ENCODE Processing Pipeline 750206f4ea5620b377e2b5e8349306b4 https://www.encodeproject.org/files/ENCFF039BVH/@@download/ENCFF039BVH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF924AXY bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF715NVD 13091208 ENCODE Processing Pipeline 9088d78f76abb81a42becfb4a2b162f6 https://www.encodeproject.org/files/ENCFF924AXY/@@download/ENCFF924AXY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF827BLR bigWig fold change over control ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF267AMC, ENCFF293DEQ 709199858 ENCODE Processing Pipeline 44ce987cd40c58aaf7593f05a4f378af https://www.encodeproject.org/files/ENCFF827BLR/@@download/ENCFF827BLR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF263GHK bigWig fold change over control ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF218VQI, ENCFF267AMC, ENCFF293DEQ 905768972 ENCODE Processing Pipeline c380c641ba0d019c3534f1fc5cbd27e4 https://www.encodeproject.org/files/ENCFF263GHK/@@download/ENCFF263GHK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF089GHB bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF218VQI, ENCFF267AMC, ENCFF293DEQ 7197004 ENCODE Processing Pipeline 84947de8576e764c177b83111e1d4dc3 https://www.encodeproject.org/files/ENCFF089GHB/@@download/ENCFF089GHB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF831NLQ bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF237BUA 13207705 ENCODE Processing Pipeline 251e18425c82ddc7863bd6b3c8e2c577 https://www.encodeproject.org/files/ENCFF831NLQ/@@download/ENCFF831NLQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF102VYH bed narrowPeak optimal idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF237BUA, ENCFF562GZU, ENCFF715NVD 24193 ENCODE Processing Pipeline 83dfc249b0090c28a37144f1a52b85b5 https://www.encodeproject.org/files/ENCFF102VYH/@@download/ENCFF102VYH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF232RUY bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF699MZT 13237648 ENCODE Processing Pipeline 024878617cd9e1642f3e2d667f7e0e48 https://www.encodeproject.org/files/ENCFF232RUY/@@download/ENCFF232RUY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF802TXP bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF089GHB 13234502 ENCODE Processing Pipeline 6bc5aba15eec197c458461ab8fd046f3 https://www.encodeproject.org/files/ENCFF802TXP/@@download/ENCFF802TXP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF414OZX bed narrowPeak conservative idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF089GHB, ENCFF419RSJ, ENCFF699MZT, ENCFF753MSK 22410 ENCODE Processing Pipeline fa8f0a7ad64043855b7cae3c0a3f1f06 https://www.encodeproject.org/files/ENCFF414OZX/@@download/ENCFF414OZX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF873DCJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF414OZX 119192 ENCODE Processing Pipeline 8bcbb75dedd2f93a77fdd4d1f15abcd3 https://www.encodeproject.org/files/ENCFF873DCJ/@@download/ENCFF873DCJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF753MSK bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF267AMC, ENCFF293DEQ 6419586 ENCODE Processing Pipeline 16191025ed8836b8a4caa3db4dc4dff5 https://www.encodeproject.org/files/ENCFF753MSK/@@download/ENCFF753MSK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF105APK bigBed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF753MSK 13108884 ENCODE Processing Pipeline 3cbbca05653f0c9219221ea649633afc https://www.encodeproject.org/files/ENCFF105APK/@@download/ENCFF105APK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF699MZT bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF218VQI, ENCFF293DEQ 6232690 ENCODE Processing Pipeline 2705529314f0f93662b4cda29ed6a359 https://www.encodeproject.org/files/ENCFF699MZT/@@download/ENCFF699MZT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF597KMH bed narrowPeak optimal idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF089GHB, ENCFF419RSJ, ENCFF699MZT, ENCFF753MSK 24070 ENCODE Processing Pipeline 0c61abf02d800e50cd9f9c0cc48dbed4 https://www.encodeproject.org/files/ENCFF597KMH/@@download/ENCFF597KMH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF191TFH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF597KMH 123078 ENCODE Processing Pipeline 4d52082b49986df5d417a942784c0049 https://www.encodeproject.org/files/ENCFF191TFH/@@download/ENCFF191TFH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF816GRP fastq reads ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF719VPQ 2386982377 Michael Snyder, Stanford c2b4f594b07b324f8f4085e8ff1a0567 SRA:SRR6213915 https://www.encodeproject.org/files/ENCFF816GRP/@@download/ENCFF816GRP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF719VPQ fastq reads ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF816GRP 2416483908 Michael Snyder, Stanford 73a80c47c8f8d8dcb5ce493188524999 SRA:SRR6213915 https://www.encodeproject.org/files/ENCFF719VPQ/@@download/ENCFF719VPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF287QCC fastq reads ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF273IVY 2741577443 Michael Snyder, Stanford dacb42236ab456ba7d086e840927b618 SRA:SRR6213916 https://www.encodeproject.org/files/ENCFF287QCC/@@download/ENCFF287QCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF273IVY fastq reads ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF287QCC 2777745598 Michael Snyder, Stanford 1156d8755f5797f6466fb678b4fb43d6 SRA:SRR6213916 https://www.encodeproject.org/files/ENCFF273IVY/@@download/ENCFF273IVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF017AVU bam unfiltered alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF719VPQ, ENCFF807MUK, ENCFF816GRP 4890342948 ENCODE Processing Pipeline 0ef2de63888609eefaccb6301514b125 https://www.encodeproject.org/files/ENCFF017AVU/@@download/ENCFF017AVU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF907AFT bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF719VPQ, ENCFF807MUK, ENCFF816GRP 4270708243 ENCODE Processing Pipeline bfc24fe66c84497ad15c4dacfbddbcf1 https://www.encodeproject.org/files/ENCFF907AFT/@@download/ENCFF907AFT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF975BNR bam unfiltered alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF719VPQ, ENCFF816GRP 4897563834 ENCODE Processing Pipeline 8d8b56ffd0246f404a9a939bf6790e18 https://www.encodeproject.org/files/ENCFF975BNR/@@download/ENCFF975BNR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF940NMC bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF719VPQ, ENCFF816GRP 4273228587 ENCODE Processing Pipeline 291b2e96f72e1e062515e49e96af7428 https://www.encodeproject.org/files/ENCFF940NMC/@@download/ENCFF940NMC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF002XHV bam unfiltered alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF273IVY, ENCFF287QCC, ENCFF807MUK 5557306285 ENCODE Processing Pipeline 8545b5a8b3e8c8b61d7c3c4cea22c381 https://www.encodeproject.org/files/ENCFF002XHV/@@download/ENCFF002XHV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF351PFE bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF273IVY, ENCFF287QCC, ENCFF807MUK 4882581152 ENCODE Processing Pipeline bfe61fd71caaad4a3248c9ae4fb9d14d https://www.encodeproject.org/files/ENCFF351PFE/@@download/ENCFF351PFE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF703DEF bam unfiltered alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF273IVY, ENCFF287QCC, ENCFF643CGH 5565267167 ENCODE Processing Pipeline 8f2eff02c2c12c2f551e2d75c0419f03 https://www.encodeproject.org/files/ENCFF703DEF/@@download/ENCFF703DEF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF884FVP bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF273IVY, ENCFF287QCC, ENCFF643CGH 4885539175 ENCODE Processing Pipeline 97fdd8ae4c7df71962a1ee1ddbc1e9a3 https://www.encodeproject.org/files/ENCFF884FVP/@@download/ENCFF884FVP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF321JTG bigWig signal p-value ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907AFT 1386657120 ENCODE Processing Pipeline 03593e527680abf508c2bc99ce0a0980 https://www.encodeproject.org/files/ENCFF321JTG/@@download/ENCFF321JTG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF972TAB bigWig signal p-value ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF940NMC 1248605793 ENCODE Processing Pipeline 414552e0cc6e327f585406240da33d34 https://www.encodeproject.org/files/ENCFF972TAB/@@download/ENCFF972TAB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF969TRJ bigWig signal p-value ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF351PFE 1221132335 ENCODE Processing Pipeline a1ac328e7b0b4bf05ac8342eaa33f221 https://www.encodeproject.org/files/ENCFF969TRJ/@@download/ENCFF969TRJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF716MEM bigWig signal p-value ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF351PFE, ENCFF907AFT 1704895056 ENCODE Processing Pipeline 31388589277ee158eaaefc66a3567d55 https://www.encodeproject.org/files/ENCFF716MEM/@@download/ENCFF716MEM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF058GXQ bigWig signal p-value ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF884FVP 1394761969 ENCODE Processing Pipeline dfb128030694af08e4d627fed18f0804 https://www.encodeproject.org/files/ENCFF058GXQ/@@download/ENCFF058GXQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF916XTC bigWig fold change over control ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907AFT 1331595050 ENCODE Processing Pipeline d8bc652f29163f80685090598bd1a9aa https://www.encodeproject.org/files/ENCFF916XTC/@@download/ENCFF916XTC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF794OAO bigWig signal p-value ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF884FVP, ENCFF940NMC 1817224593 ENCODE Processing Pipeline 9b6b8c3377f1deb7bdb0538f905a5124 https://www.encodeproject.org/files/ENCFF794OAO/@@download/ENCFF794OAO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF356NEH bigWig fold change over control ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF351PFE 1476710031 ENCODE Processing Pipeline 7e0853b633476c0aa9a6bfd58acdd153 https://www.encodeproject.org/files/ENCFF356NEH/@@download/ENCFF356NEH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF355SEU bigWig fold change over control ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF940NMC 1326019449 ENCODE Processing Pipeline cf9b1bbca52ad6e9ba14fb510c83d1b2 https://www.encodeproject.org/files/ENCFF355SEU/@@download/ENCFF355SEU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF372FFX bigBed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF619PID 11274236 ENCODE Processing Pipeline 0108104bf85aa0bcad8e935f6857d636 https://www.encodeproject.org/files/ENCFF372FFX/@@download/ENCFF372FFX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF494TJQ bigWig fold change over control ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF884FVP 1439615980 ENCODE Processing Pipeline 4d81899a688314da8219cd0b67476495 https://www.encodeproject.org/files/ENCFF494TJQ/@@download/ENCFF494TJQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF406SLN bigWig fold change over control ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF884FVP, ENCFF940NMC 1960740189 ENCODE Processing Pipeline 4ff795864501a8e61f8f27f39bfbf606 https://www.encodeproject.org/files/ENCFF406SLN/@@download/ENCFF406SLN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF222QBM bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF351PFE, ENCFF907AFT 7127132 ENCODE Processing Pipeline 2ecc4be1092fa06814a3491e1fb1fb50 https://www.encodeproject.org/files/ENCFF222QBM/@@download/ENCFF222QBM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF979RGZ bigBed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF400PPT 11216951 ENCODE Processing Pipeline 5b522b36960fe4b2b8ee8cc8642b8d27 https://www.encodeproject.org/files/ENCFF979RGZ/@@download/ENCFF979RGZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF414YAD bigWig fold change over control ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF351PFE, ENCFF907AFT 1987766599 ENCODE Processing Pipeline 6140ea61471c0f00415065cd95eb491d https://www.encodeproject.org/files/ENCFF414YAD/@@download/ENCFF414YAD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF619PID bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907AFT 6293850 ENCODE Processing Pipeline fb8f0845e99629780ffebcba5d3b2aff https://www.encodeproject.org/files/ENCFF619PID/@@download/ENCFF619PID.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF393FHO bigBed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF222QBM 11043513 ENCODE Processing Pipeline d7a3e328ce6fcd103f809f2d1d0d4bd3 https://www.encodeproject.org/files/ENCFF393FHO/@@download/ENCFF393FHO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF223LJN bed narrowPeak conservative idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF222QBM, ENCFF400PPT, ENCFF619PID 14737 ENCODE Processing Pipeline fd4ffeb762cc96e668d95b0c48ff765f https://www.encodeproject.org/files/ENCFF223LJN/@@download/ENCFF223LJN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF400PPT bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF351PFE 6548867 ENCODE Processing Pipeline 08eee7dad4a4a2a834acb8ba3e3eade0 https://www.encodeproject.org/files/ENCFF400PPT/@@download/ENCFF400PPT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF513FEK bigBed narrowPeak conservative idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF223LJN 75686 ENCODE Processing Pipeline e31b0bd9746b34b37750927acd69e6d9 https://www.encodeproject.org/files/ENCFF513FEK/@@download/ENCFF513FEK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF985YVA bed narrowPeak optimal idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF222QBM, ENCFF400PPT, ENCFF619PID 27199 ENCODE Processing Pipeline 72d818cee6bdbc1f5a25d993a04bf6bf https://www.encodeproject.org/files/ENCFF985YVA/@@download/ENCFF985YVA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF379YJV bigBed narrowPeak optimal idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF985YVA 95428 ENCODE Processing Pipeline 193b929e2b9f16d6a984e7e2b6b6fb98 https://www.encodeproject.org/files/ENCFF379YJV/@@download/ENCFF379YJV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF808YSX bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF940NMC 6297494 ENCODE Processing Pipeline 47a0a0b6d3a0b3e636ebb5a6d614d25e https://www.encodeproject.org/files/ENCFF808YSX/@@download/ENCFF808YSX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF919GOP bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF884FVP 6549846 ENCODE Processing Pipeline ac8397fe5dbb889f39496637050dc9cb https://www.encodeproject.org/files/ENCFF919GOP/@@download/ENCFF919GOP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF382NNJ bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF884FVP, ENCFF940NMC 7131882 ENCODE Processing Pipeline 2028933852c25a4a78de250116b8c1c0 https://www.encodeproject.org/files/ENCFF382NNJ/@@download/ENCFF382NNJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF520TUG bigBed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF808YSX 11283427 ENCODE Processing Pipeline 87b4723014dac253ee7d2278725a86c5 https://www.encodeproject.org/files/ENCFF520TUG/@@download/ENCFF520TUG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF203MML bigBed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF919GOP 11225078 ENCODE Processing Pipeline 8f88330b1eb04c6614deea70da11524d https://www.encodeproject.org/files/ENCFF203MML/@@download/ENCFF203MML.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF184SSM bigBed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF382NNJ 11006852 ENCODE Processing Pipeline 4f4b28851ae9888e01a6160afabf0773 https://www.encodeproject.org/files/ENCFF184SSM/@@download/ENCFF184SSM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF863PQR bed narrowPeak conservative idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF382NNJ, ENCFF419RSJ, ENCFF808YSX, ENCFF919GOP 16145 ENCODE Processing Pipeline d7594729e3ac8f4a5d2d98e5844935a7 https://www.encodeproject.org/files/ENCFF863PQR/@@download/ENCFF863PQR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF091JWQ bed narrowPeak optimal idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF382NNJ, ENCFF419RSJ, ENCFF808YSX, ENCFF919GOP 30153 ENCODE Processing Pipeline e22b8dc830b77be1b517628d010d5c2a https://www.encodeproject.org/files/ENCFF091JWQ/@@download/ENCFF091JWQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF055WVG bigBed narrowPeak conservative idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF863PQR 79102 ENCODE Processing Pipeline 10ba12c5a85742d820f2925040b38498 https://www.encodeproject.org/files/ENCFF055WVG/@@download/ENCFF055WVG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF507CBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF091JWQ 101772 ENCODE Processing Pipeline 5a3993149e8dc942af0bb5ef885bec76 https://www.encodeproject.org/files/ENCFF507CBQ/@@download/ENCFF507CBQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF000VOS bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 1 1192562220 Michael Snyder, Stanford 581ce2b98c9ff128287dcf5273ef3733 https://www.encodeproject.org/files/ENCFF000VOS/@@download/ENCFF000VOS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VOT bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VDO 339000 Michael Snyder, Stanford 06143940a28b3d3de2bcdaf68ca6eaba https://www.encodeproject.org/files/ENCFF000VOT/@@download/ENCFF000VOT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VOU fastq reads ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 928925050 Michael Snyder, Stanford 37f4052e3306fedf80fbcf6d8a2cf684 https://www.encodeproject.org/files/ENCFF000VOU/@@download/ENCFF000VOU.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VOW fastq reads ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1011603481 Michael Snyder, Stanford d892a2d8f2573f9add1828dbfb79da4c https://www.encodeproject.org/files/ENCFF000VOW/@@download/ENCFF000VOW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VOY bigWig signal ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 362319226 Michael Snyder, Stanford dd49e94d886076d1b5bb80b932edb4a5 https://www.encodeproject.org/files/ENCFF000VOY/@@download/ENCFF000VOY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VOZ bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 1 1342573162 Michael Snyder, Stanford 82316d956cfe83a4584573538800db30 https://www.encodeproject.org/files/ENCFF000VOZ/@@download/ENCFF000VOZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VDO bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 129957 Michael Snyder, Stanford adfd0e32d5582e6d308e088bba680b08 https://www.encodeproject.org/files/ENCFF001VDO/@@download/ENCFF001VDO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF367WEI bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VOU, ENCFF643CGH 759475824 ENCODE Processing Pipeline f44667d369811a78aee4e4e0b19f3074 https://www.encodeproject.org/files/ENCFF367WEI/@@download/ENCFF367WEI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF683CHH bam unfiltered alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VOU, ENCFF643CGH 1185419481 ENCODE Processing Pipeline 15f2decd4bd993ef05acce81325e298f https://www.encodeproject.org/files/ENCFF683CHH/@@download/ENCFF683CHH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF408TPS bam unfiltered alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VOW, ENCFF643CGH 1337509040 ENCODE Processing Pipeline 342ab631fd49114acb219bd978533e8b https://www.encodeproject.org/files/ENCFF408TPS/@@download/ENCFF408TPS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF866MOR bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VOW, ENCFF643CGH 910236732 ENCODE Processing Pipeline 11c3efb4243ce026ce7833ac8c81ba85 https://www.encodeproject.org/files/ENCFF866MOR/@@download/ENCFF866MOR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF152UQP bam unfiltered alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VOU, ENCFF807MUK 1179219465 ENCODE Processing Pipeline 8db6f46cde675cbf50b6f94a02533a21 https://www.encodeproject.org/files/ENCFF152UQP/@@download/ENCFF152UQP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF518QII bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VOU, ENCFF807MUK 759736162 ENCODE Processing Pipeline 5ea02588889231693daf59f9cc6c5c98 https://www.encodeproject.org/files/ENCFF518QII/@@download/ENCFF518QII.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF040DDP bam unfiltered alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VOW, ENCFF807MUK 1330727973 ENCODE Processing Pipeline e3af16409a5b3c33b376de9aa400b875 https://www.encodeproject.org/files/ENCFF040DDP/@@download/ENCFF040DDP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF471DSB bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VOW, ENCFF807MUK 910459644 ENCODE Processing Pipeline 2c41cacd1be8ad1150250628f190d212 https://www.encodeproject.org/files/ENCFF471DSB/@@download/ENCFF471DSB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF483KJX bigWig signal p-value ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF777NWU, ENCFF857MFM, ENCFF866MOR 609599855 ENCODE Processing Pipeline 4a335847ffdd981a26c45412a31a031c https://www.encodeproject.org/files/ENCFF483KJX/@@download/ENCFF483KJX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF030TJD bigWig fold change over control ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF777NWU, ENCFF857MFM, ENCFF866MOR 530640280 ENCODE Processing Pipeline 1335e9fe102b128121d377a1e305d7a7 https://www.encodeproject.org/files/ENCFF030TJD/@@download/ENCFF030TJD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF330DSQ bigWig signal p-value ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF367WEI, ENCFF777NWU, ENCFF857MFM 575099310 ENCODE Processing Pipeline e45cb76eb319af07832ad2768b0bfe1f https://www.encodeproject.org/files/ENCFF330DSQ/@@download/ENCFF330DSQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF836BUW bigWig signal p-value ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF367WEI, ENCFF777NWU, ENCFF857MFM, ENCFF866MOR 837816788 ENCODE Processing Pipeline 07d7be518ed5e8603a7f620f2aa54ab0 https://www.encodeproject.org/files/ENCFF836BUW/@@download/ENCFF836BUW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF137VHW bigWig fold change over control ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF367WEI, ENCFF777NWU, ENCFF857MFM 459931982 ENCODE Processing Pipeline 6247d75cfd475b76a897c15dc58daf95 https://www.encodeproject.org/files/ENCFF137VHW/@@download/ENCFF137VHW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF664QPV bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF777NWU, ENCFF857MFM, ENCFF866MOR 5234220 ENCODE Processing Pipeline 01bb197fece96b6d7ae7c5f54fdcdd4b https://www.encodeproject.org/files/ENCFF664QPV/@@download/ENCFF664QPV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF053JWJ bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF367WEI, ENCFF777NWU, ENCFF857MFM, ENCFF866MOR 5971826 ENCODE Processing Pipeline 8e6adc758dde322ff7e5187f9adcf241 https://www.encodeproject.org/files/ENCFF053JWJ/@@download/ENCFF053JWJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF338VRO bigWig fold change over control ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF367WEI, ENCFF777NWU, ENCFF857MFM, ENCFF866MOR 818586587 ENCODE Processing Pipeline a2fa6e9636fb71ed26f19dbd6344ee91 https://www.encodeproject.org/files/ENCFF338VRO/@@download/ENCFF338VRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF814PWW bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF367WEI, ENCFF777NWU, ENCFF857MFM 4603046 ENCODE Processing Pipeline c667c342e93588200f859aab79ae99e5 https://www.encodeproject.org/files/ENCFF814PWW/@@download/ENCFF814PWW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF506RVY bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF814PWW 11020878 ENCODE Processing Pipeline 660795cb4f9bb40071de3e85fef90d15 https://www.encodeproject.org/files/ENCFF506RVY/@@download/ENCFF506RVY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF997GTP bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF053JWJ 13514408 ENCODE Processing Pipeline 02e59a9a090be43c5345cc34b42c9d03 https://www.encodeproject.org/files/ENCFF997GTP/@@download/ENCFF997GTP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF629DJX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF674RQX 342926 ENCODE Processing Pipeline a7b63228b8c1a3a343c6d43ae7b384dd https://www.encodeproject.org/files/ENCFF629DJX/@@download/ENCFF629DJX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF304WAO bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF664QPV 11211323 ENCODE Processing Pipeline 15340867fcf6ce9ffc1d570ae611da6d https://www.encodeproject.org/files/ENCFF304WAO/@@download/ENCFF304WAO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF674RQX bed narrowPeak conservative idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF053JWJ, ENCFF419RSJ, ENCFF664QPV, ENCFF814PWW 168241 ENCODE Processing Pipeline 6fd3be35f733b4bd305d70504cc4239e https://www.encodeproject.org/files/ENCFF674RQX/@@download/ENCFF674RQX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF542GMN bed narrowPeak optimal idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF053JWJ, ENCFF419RSJ, ENCFF664QPV, ENCFF814PWW 174630 ENCODE Processing Pipeline 2da819b127d95cba8efbe128723241c7 https://www.encodeproject.org/files/ENCFF542GMN/@@download/ENCFF542GMN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF046ZHW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF542GMN 352904 ENCODE Processing Pipeline 68d4c3eb85600be3f85e9c90861c4571 https://www.encodeproject.org/files/ENCFF046ZHW/@@download/ENCFF046ZHW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF911WCU bigWig fold change over control ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF518QII 456129186 ENCODE Processing Pipeline b488606815f152f081eecccd63723187 https://www.encodeproject.org/files/ENCFF911WCU/@@download/ENCFF911WCU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF942QJS bigWig signal p-value ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI, ENCFF518QII 819836984 ENCODE Processing Pipeline 4f85ef27cadba957d1a4aaa2646b30dc https://www.encodeproject.org/files/ENCFF942QJS/@@download/ENCFF942QJS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF511NBR bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF518QII 4845182 ENCODE Processing Pipeline 408a9aff4470bd0dda09b5399f114544 https://www.encodeproject.org/files/ENCFF511NBR/@@download/ENCFF511NBR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF657NEN bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI, ENCFF518QII 5975343 ENCODE Processing Pipeline b26eaedfb8be61fb00b1cdc076910cc1 https://www.encodeproject.org/files/ENCFF657NEN/@@download/ENCFF657NEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF912FUK bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF878NMO 11215706 ENCODE Processing Pipeline 1b03e0a83321dfeaf4ea51ebbab8249b https://www.encodeproject.org/files/ENCFF912FUK/@@download/ENCFF912FUK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF967HGY bed narrowPeak conservative idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF511NBR, ENCFF657NEN, ENCFF878NMO 167034 ENCODE Processing Pipeline cb99f9d923276bbd1aa64adc774e1941 https://www.encodeproject.org/files/ENCFF967HGY/@@download/ENCFF967HGY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF617MQS bigWig signal p-value ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF518QII 553068172 ENCODE Processing Pipeline a47189cf350bde6065daba3878eb5974 https://www.encodeproject.org/files/ENCFF617MQS/@@download/ENCFF617MQS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF504USY bigWig signal p-value ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI 546060495 ENCODE Processing Pipeline 6fe2d86043f82ca4fb8fd2b94578030c https://www.encodeproject.org/files/ENCFF504USY/@@download/ENCFF504USY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF181WTE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF502JKO 354642 ENCODE Processing Pipeline 90f0fe1a4c35e97b3b7ec6064cc96e28 https://www.encodeproject.org/files/ENCFF181WTE/@@download/ENCFF181WTE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF449DCB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF967HGY 341474 ENCODE Processing Pipeline a2c07c197081fe864fb482be21fd9efd https://www.encodeproject.org/files/ENCFF449DCB/@@download/ENCFF449DCB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF390KQI bigWig fold change over control ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI 520422036 ENCODE Processing Pipeline e1f3e222ee696482f621f46295192171 https://www.encodeproject.org/files/ENCFF390KQI/@@download/ENCFF390KQI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF976FUZ bigWig fold change over control ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI, ENCFF518QII 809822172 ENCODE Processing Pipeline aaa9cb3ca9799cf60ca03c120a788f1c https://www.encodeproject.org/files/ENCFF976FUZ/@@download/ENCFF976FUZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF878NMO bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI 5311047 ENCODE Processing Pipeline 1abc77b75264c1b2a827ca80269dbc63 https://www.encodeproject.org/files/ENCFF878NMO/@@download/ENCFF878NMO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF164EYD bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF511NBR 11121338 ENCODE Processing Pipeline 77c3d5a8ddc180c2669fe86e9741e8af https://www.encodeproject.org/files/ENCFF164EYD/@@download/ENCFF164EYD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF986AEC bigBed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF657NEN 13512830 ENCODE Processing Pipeline 9a0757de2cd5a120374389e8ec980687 https://www.encodeproject.org/files/ENCFF986AEC/@@download/ENCFF986AEC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF502JKO bed narrowPeak optimal idr thresholded peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF511NBR, ENCFF657NEN, ENCFF878NMO 176030 ENCODE Processing Pipeline 36b284c7db5e41dcb7214b5fbfe05542 https://www.encodeproject.org/files/ENCFF502JKO/@@download/ENCFF502JKO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZOR bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 596359429 Peggy Farnham, USC 5627f9f43287fee2ac6c5073a0f7c607 https://www.encodeproject.org/files/ENCFF000ZOR/@@download/ENCFF000ZOR.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000ZOS bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQT 231632 Peggy Farnham, USC b145e9c42bafd761fc2b199e7f47dfc3 https://www.encodeproject.org/files/ENCFF000ZOS/@@download/ENCFF000ZOS.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000ZOT fastq reads ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1301048114 Peggy Farnham, USC 756e795b02022d3946712e08219f9011 https://www.encodeproject.org/files/ENCFF000ZOT/@@download/ENCFF000ZOT.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZPA/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000ZOV fastq reads ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 909732975 Peggy Farnham, USC 46b1a56181939e1ada9dc3f402dfa17c https://www.encodeproject.org/files/ENCFF000ZOV/@@download/ENCFF000ZOV.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZPA/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000ZOX bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 521303638 Peggy Farnham, USC a25f29ef324f1ae4f3902d2333109854 https://www.encodeproject.org/files/ENCFF000ZOX/@@download/ENCFF000ZOX.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000ZOY bigWig signal ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 387717059 Peggy Farnham, USC 0648b46a66c4c4d95ec631771da2c121 https://www.encodeproject.org/files/ENCFF000ZOY/@@download/ENCFF000ZOY.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001VQT bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 74994 Peggy Farnham, USC 80aa4c442db12930754d848196aa35e7 https://www.encodeproject.org/files/ENCFF001VQT/@@download/ENCFF001VQT.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CZX bed narrowPeak optimal idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 59044 ENCODE Consortium Analysis Working Group 77c725f5d93f6ab088d6e5f4df5be40c https://www.encodeproject.org/files/ENCFF002CZX/@@download/ENCFF002CZX.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF897GEC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZX 236342 ENCODE Consortium 72baacd5f51e333758a69f4aadcf0e22 https://www.encodeproject.org/files/ENCFF897GEC/@@download/ENCFF897GEC.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF197PQI bam unfiltered alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOV, ENCFF643CGH 1064793944 ENCODE Processing Pipeline 7de61218e898e228e7aea169fc4f7a7c https://www.encodeproject.org/files/ENCFF197PQI/@@download/ENCFF197PQI.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF147KAY bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOV, ENCFF643CGH 723499008 ENCODE Processing Pipeline c1cfb3fb7b8e9ed5a1f9b32fef388a97 https://www.encodeproject.org/files/ENCFF147KAY/@@download/ENCFF147KAY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF261SIF bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOT, ENCFF643CGH 720538536 ENCODE Processing Pipeline a9ad44e34d40b614b2d6e9e92ee4147c https://www.encodeproject.org/files/ENCFF261SIF/@@download/ENCFF261SIF.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF931ABL bam unfiltered alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOT, ENCFF643CGH 1385213763 ENCODE Processing Pipeline 9f8dceb21537802ec0340d1bcf8cf8a3 https://www.encodeproject.org/files/ENCFF931ABL/@@download/ENCFF931ABL.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF497SFX bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOV, ENCFF807MUK 723694235 ENCODE Processing Pipeline def9e13f5bc47ccb67cade09023a2f16 https://www.encodeproject.org/files/ENCFF497SFX/@@download/ENCFF497SFX.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF207OOB bam unfiltered alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOV, ENCFF807MUK 1058232379 ENCODE Processing Pipeline f4f7369d8b56d89dfd5ceef6b7cabc04 https://www.encodeproject.org/files/ENCFF207OOB/@@download/ENCFF207OOB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF061LTZ bam unfiltered alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOT, ENCFF807MUK 1378162244 ENCODE Processing Pipeline c72325dafee9678977fa2195e7377ef2 https://www.encodeproject.org/files/ENCFF061LTZ/@@download/ENCFF061LTZ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF462CTI bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOT, ENCFF807MUK 720819813 ENCODE Processing Pipeline dcfd346c60291e2b527d4340f2c0c010 https://www.encodeproject.org/files/ENCFF462CTI/@@download/ENCFF462CTI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF632VHI bigWig signal p-value ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF147KAY, ENCFF962PBI 389860614 ENCODE Processing Pipeline aa4ae2f29eacab6320af6bda29814c8d https://www.encodeproject.org/files/ENCFF632VHI/@@download/ENCFF632VHI.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF272ZOH bigWig signal p-value ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF261SIF, ENCFF962PBI 361821222 ENCODE Processing Pipeline 473ad3bac324ae2cc0fae15ed60ca8c4 https://www.encodeproject.org/files/ENCFF272ZOH/@@download/ENCFF272ZOH.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF045IXS bigWig fold change over control ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF261SIF, ENCFF962PBI 370834944 ENCODE Processing Pipeline 1f018d21bc00c8dbd64bedefa6d24936 https://www.encodeproject.org/files/ENCFF045IXS/@@download/ENCFF045IXS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF367ELQ bigWig signal p-value ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF147KAY, ENCFF261SIF, ENCFF962PBI 413287241 ENCODE Processing Pipeline 733e0187c461be3f161bd11aa2dc1990 https://www.encodeproject.org/files/ENCFF367ELQ/@@download/ENCFF367ELQ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF942XRE bigWig fold change over control ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF147KAY, ENCFF962PBI 369179946 ENCODE Processing Pipeline 81a6864d8130bc19b2c2a8998f022c80 https://www.encodeproject.org/files/ENCFF942XRE/@@download/ENCFF942XRE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF679FNB bigWig fold change over control ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF147KAY, ENCFF261SIF, ENCFF962PBI 625261816 ENCODE Processing Pipeline ade4e8a8176d73cb3628708330dd1c6f https://www.encodeproject.org/files/ENCFF679FNB/@@download/ENCFF679FNB.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF871KMV bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF261SIF, ENCFF962PBI 4160421 ENCODE Processing Pipeline a14d93f8d36d92ddd82884ad792e935b https://www.encodeproject.org/files/ENCFF871KMV/@@download/ENCFF871KMV.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF468KWV bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF147KAY, ENCFF962PBI 4365407 ENCODE Processing Pipeline d9004780af4a4b19857240667e7a4354 https://www.encodeproject.org/files/ENCFF468KWV/@@download/ENCFF468KWV.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF754YTF bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF871KMV 10769688 ENCODE Processing Pipeline c41dfd45a0e33f96a60fb1404bf1d92a https://www.encodeproject.org/files/ENCFF754YTF/@@download/ENCFF754YTF.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF450JIP bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF147KAY, ENCFF261SIF, ENCFF962PBI 5006438 ENCODE Processing Pipeline 0bd4dbc5c317b3ea4bef917a35b8a5b2 https://www.encodeproject.org/files/ENCFF450JIP/@@download/ENCFF450JIP.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF464KNP bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF468KWV 11046898 ENCODE Processing Pipeline 93795481a20f2ced4d8d292afdc0baef https://www.encodeproject.org/files/ENCFF464KNP/@@download/ENCFF464KNP.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF671OTL bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF450JIP 11286080 ENCODE Processing Pipeline dcd214c595f4659f60282bfc643a275d https://www.encodeproject.org/files/ENCFF671OTL/@@download/ENCFF671OTL.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF789ZAT bed narrowPeak optimal idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF450JIP, ENCFF468KWV, ENCFF871KMV 45161 ENCODE Processing Pipeline 5cb645396d7ee3adc9663bac718243f6 https://www.encodeproject.org/files/ENCFF789ZAT/@@download/ENCFF789ZAT.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF176LMS bed narrowPeak conservative idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF450JIP, ENCFF468KWV, ENCFF871KMV 38401 ENCODE Processing Pipeline 4b85cecf2eaedfd07cfad594e675bc4e https://www.encodeproject.org/files/ENCFF176LMS/@@download/ENCFF176LMS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF730OWY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF176LMS 117120 ENCODE Processing Pipeline bcd74366a3a35711539829c643007f17 https://www.encodeproject.org/files/ENCFF730OWY/@@download/ENCFF730OWY.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF152USQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF789ZAT 127473 ENCODE Processing Pipeline e25ebb8cd2900120c60dc6722184a782 https://www.encodeproject.org/files/ENCFF152USQ/@@download/ENCFF152USQ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF707DNM bigWig fold change over control ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF462CTI, ENCFF949HSN 370064156 ENCODE Processing Pipeline f4b59fd1b08a61601d194d012913a87b https://www.encodeproject.org/files/ENCFF707DNM/@@download/ENCFF707DNM.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF529AOO bigWig signal p-value ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF462CTI, ENCFF949HSN 388640558 ENCODE Processing Pipeline ed99e311f7b3f4f7a1703f228bc9c979 https://www.encodeproject.org/files/ENCFF529AOO/@@download/ENCFF529AOO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF998MFU bigWig fold change over control ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF462CTI, ENCFF497SFX, ENCFF949HSN 623659136 ENCODE Processing Pipeline 680b6d075e996fa8c90d3aa684603a9f https://www.encodeproject.org/files/ENCFF998MFU/@@download/ENCFF998MFU.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF743APL bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF218LZW 11132876 ENCODE Processing Pipeline 4068314366b5cf621c7d35ae1f7e71dc https://www.encodeproject.org/files/ENCFF743APL/@@download/ENCFF743APL.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF703JRW bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF535FRY 11260840 ENCODE Processing Pipeline cb91188a9d1349cbceee579d6481683c https://www.encodeproject.org/files/ENCFF703JRW/@@download/ENCFF703JRW.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF504WEH bigWig signal p-value ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF497SFX, ENCFF949HSN 395612101 ENCODE Processing Pipeline f1f710f580afc85e9470f65c15e8b835 https://www.encodeproject.org/files/ENCFF504WEH/@@download/ENCFF504WEH.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF039AWP bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF462CTI, ENCFF949HSN 4232953 ENCODE Processing Pipeline bb939532e10026a90ceb2f505c7c67e3 https://www.encodeproject.org/files/ENCFF039AWP/@@download/ENCFF039AWP.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF218LZW bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF497SFX, ENCFF949HSN 4408545 ENCODE Processing Pipeline 6011fd5b4090fe3b50fa63bcff9b68ec https://www.encodeproject.org/files/ENCFF218LZW/@@download/ENCFF218LZW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF535FRY bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF462CTI, ENCFF497SFX, ENCFF949HSN 5065526 ENCODE Processing Pipeline 8a2043225c5a73f7b2221037e4e1d297 https://www.encodeproject.org/files/ENCFF535FRY/@@download/ENCFF535FRY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF455BVU bed narrowPeak conservative idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF039AWP, ENCFF218LZW, ENCFF535FRY 38745 ENCODE Processing Pipeline 6c0829d8c0381a69a414ecf109adc718 https://www.encodeproject.org/files/ENCFF455BVU/@@download/ENCFF455BVU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF358DTY bigBed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF039AWP 10852000 ENCODE Processing Pipeline 845ef5ca059be631d0f45b67a79c0857 https://www.encodeproject.org/files/ENCFF358DTY/@@download/ENCFF358DTY.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF762DRA bed narrowPeak optimal idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF039AWP, ENCFF218LZW, ENCFF535FRY 45054 ENCODE Processing Pipeline c9f963785903b49b7b904c1bc8eee567 https://www.encodeproject.org/files/ENCFF762DRA/@@download/ENCFF762DRA.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF381XBT bigWig signal p-value ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF462CTI, ENCFF497SFX, ENCFF949HSN 413498769 ENCODE Processing Pipeline a0f110d4a6a1cbdbfda467264b193c30 https://www.encodeproject.org/files/ENCFF381XBT/@@download/ENCFF381XBT.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF290KDC bigWig fold change over control ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF497SFX, ENCFF949HSN 369449658 ENCODE Processing Pipeline aa0543b704e1b12e4eddbeca758ab802 https://www.encodeproject.org/files/ENCFF290KDC/@@download/ENCFF290KDC.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF336OYR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF455BVU 116588 ENCODE Processing Pipeline c679b03c513215b841dc51c917401401 https://www.encodeproject.org/files/ENCFF336OYR/@@download/ENCFF336OYR.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF375HJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF762DRA 126256 ENCODE Processing Pipeline fc418c38eaad970aadab0c9e66c8ece2 https://www.encodeproject.org/files/ENCFF375HJQ/@@download/ENCFF375HJQ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001HKX bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HLG 742897840 John Stamatoyannopoulos, UW 45f6f81cd3544400e9580fde6c7528dc https://www.encodeproject.org/files/ENCFF001HKX/@@download/ENCFF001HKX.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HKY bigBed broadPeak hotspots ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQF 4967236 John Stamatoyannopoulos, UW 662526a33f708d65313554eb4299215a https://www.encodeproject.org/files/ENCFF001HKY/@@download/ENCFF001HKY.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HKZ bigBed broadPeak hotspots ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQG 5566907 John Stamatoyannopoulos, UW b35eb6fb12185a673734b50a6a9b3387 https://www.encodeproject.org/files/ENCFF001HKZ/@@download/ENCFF001HKZ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLA bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQH 1840386 John Stamatoyannopoulos, UW c04690e1555bb1a069c72d165ba67b7b https://www.encodeproject.org/files/ENCFF001HLA/@@download/ENCFF001HLA.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLB bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQI 1565004 John Stamatoyannopoulos, UW 89ff0088b01570c5bad5aacc69a4e4ae https://www.encodeproject.org/files/ENCFF001HLB/@@download/ENCFF001HLB.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLC bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLI 1418524683 John Stamatoyannopoulos, UW ed0c9cd296d319958a36492464ba2071 https://www.encodeproject.org/files/ENCFF001HLC/@@download/ENCFF001HLC.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLD bigWig raw signal ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKX 110127758 John Stamatoyannopoulos, UW b5605a457720ed3e725306fc6d11db5d https://www.encodeproject.org/files/ENCFF001HLD/@@download/ENCFF001HLD.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLE bigWig raw signal ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLC 210233662 John Stamatoyannopoulos, UW 2c4a7c4e6a13b035741e1e00e3b00b58 https://www.encodeproject.org/files/ENCFF001HLE/@@download/ENCFF001HLE.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLG fastq reads ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 868689633 John Stamatoyannopoulos, UW 51096ceb52a62918f3c83ad779c7b2f0 https://www.encodeproject.org/files/ENCFF001HLG/@@download/ENCFF001HLG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HLR/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001HLI fastq reads ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1576789420 John Stamatoyannopoulos, UW 4a6aa315c4988df833f0551eea0b7b85 https://www.encodeproject.org/files/ENCFF001HLI/@@download/ENCFF001HLI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HLR/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001XQF bed broadPeak hotspots ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKX 3095470 John Stamatoyannopoulos, UW 8e600d7226f161c4885438f80c595409 https://www.encodeproject.org/files/ENCFF001XQF/@@download/ENCFF001XQF.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001XQG bed broadPeak hotspots ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLC 3079332 John Stamatoyannopoulos, UW 738f2a8df843dda587b42854fa1ba57d https://www.encodeproject.org/files/ENCFF001XQG/@@download/ENCFF001XQG.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001XQH bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKX 1162789 John Stamatoyannopoulos, UW dd855a335c003a27e3e2c404462bf149 https://www.encodeproject.org/files/ENCFF001XQH/@@download/ENCFF001XQH.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001XQI bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLC 930265 John Stamatoyannopoulos, UW 8cb17cf60a3910f60e2d3659114a6ce5 https://www.encodeproject.org/files/ENCFF001XQI/@@download/ENCFF001XQI.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF002DCS bed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HKX, ENCFF001HLC 1206074 ENCODE Consortium Analysis Working Group caa5260e6a967b9abfb921c04eddf43d https://www.encodeproject.org/files/ENCFF002DCS/@@download/ENCFF002DCS.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF813YEL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001XQH, ENCFF001XQI, ENCFF002DCS 2470925 ENCODE Consortium b4ce33d964d17f59132937f322f3a769 https://www.encodeproject.org/files/ENCFF813YEL/@@download/ENCFF813YEL.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF129XMW bam unfiltered alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HLG, ENCFF643CGH 913668822 ENCODE Processing Pipeline 8a2c18cf55e7ba18a55e089701f0404f https://www.encodeproject.org/files/ENCFF129XMW/@@download/ENCFF129XMW.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF545GUP bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HLG, ENCFF643CGH 545878098 ENCODE Processing Pipeline 8c1d12756d29d1933851b565fcc99ca3 https://www.encodeproject.org/files/ENCFF545GUP/@@download/ENCFF545GUP.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF897VRG bam unfiltered alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HLI, ENCFF643CGH 1793057530 ENCODE Processing Pipeline 762af91fdb2f86f7c682d809d3b040c2 https://www.encodeproject.org/files/ENCFF897VRG/@@download/ENCFF897VRG.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF425AZR bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HLI, ENCFF643CGH 1094214316 ENCODE Processing Pipeline cb5704d1a39191e48f1760f3d61938dc https://www.encodeproject.org/files/ENCFF425AZR/@@download/ENCFF425AZR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF519LBB bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HLG, ENCFF807MUK 546116542 ENCODE Processing Pipeline 0c20df87ee1d3dd35efd8337e2fcfaac https://www.encodeproject.org/files/ENCFF519LBB/@@download/ENCFF519LBB.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF927OJW bam unfiltered alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HLG, ENCFF807MUK 912435821 ENCODE Processing Pipeline 9ce3ca1786effd2dd2d483203aa88ffd https://www.encodeproject.org/files/ENCFF927OJW/@@download/ENCFF927OJW.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF089CSE bam unfiltered alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HLI, ENCFF807MUK 1785669582 ENCODE Processing Pipeline 088e2e9f5e25c09285ce2c88b0889e71 https://www.encodeproject.org/files/ENCFF089CSE/@@download/ENCFF089CSE.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF788YCK bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HLI, ENCFF807MUK 1094549739 ENCODE Processing Pipeline 90ec69dce4bcc2343ae18d5fc44b638c https://www.encodeproject.org/files/ENCFF788YCK/@@download/ENCFF788YCK.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF415QHJ bigWig signal p-value ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF227BBG, ENCFF425AZR, ENCFF545GUP 416204137 ENCODE Processing Pipeline 1ebca0aa9f1d97d217063e05b2b5ecc6 https://www.encodeproject.org/files/ENCFF415QHJ/@@download/ENCFF415QHJ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF759YCP bigWig signal p-value ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF227BBG, ENCFF545GUP 359298121 ENCODE Processing Pipeline 33525be0ae8e0487e6ada9be45270eb6 https://www.encodeproject.org/files/ENCFF759YCP/@@download/ENCFF759YCP.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF459AOI bigWig signal p-value ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF227BBG, ENCFF425AZR 446103889 ENCODE Processing Pipeline 051cb7bf0889d1fe6d602edde17366bb https://www.encodeproject.org/files/ENCFF459AOI/@@download/ENCFF459AOI.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF727VBT bigWig fold change over control ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF227BBG, ENCFF425AZR 418783078 ENCODE Processing Pipeline 5cf385cb3b3ff4e70806e019abbee768 https://www.encodeproject.org/files/ENCFF727VBT/@@download/ENCFF727VBT.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF912WYC bigWig fold change over control ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF227BBG, ENCFF545GUP 219859553 ENCODE Processing Pipeline 2650de518940ccf7f1911ed2536bfe50 https://www.encodeproject.org/files/ENCFF912WYC/@@download/ENCFF912WYC.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF727MVC bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF227BBG, ENCFF425AZR 4424730 ENCODE Processing Pipeline c65dc880692f2efc307ab2f6641317c1 https://www.encodeproject.org/files/ENCFF727MVC/@@download/ENCFF727MVC.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF844WPW bigWig fold change over control ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF227BBG, ENCFF425AZR, ENCFF545GUP 558066214 ENCODE Processing Pipeline 6365075dbb6bd2cc6398101f779edcb6 https://www.encodeproject.org/files/ENCFF844WPW/@@download/ENCFF844WPW.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF665SFM bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MVC 11055735 ENCODE Processing Pipeline 936a42b59df0cfd0534dcc5f5aece087 https://www.encodeproject.org/files/ENCFF665SFM/@@download/ENCFF665SFM.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF993NKI bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF227BBG, ENCFF545GUP 4313817 ENCODE Processing Pipeline 469540e1d2b610d79d06942c42fa4dc5 https://www.encodeproject.org/files/ENCFF993NKI/@@download/ENCFF993NKI.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF730JDO bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF227BBG, ENCFF425AZR, ENCFF545GUP 5001018 ENCODE Processing Pipeline 85abd3f188f51e83732fbd4466fd194c https://www.encodeproject.org/files/ENCFF730JDO/@@download/ENCFF730JDO.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF608OMD bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF993NKI 10122386 ENCODE Processing Pipeline 32cecaba3e10a85b2d0f72d3a749c95f https://www.encodeproject.org/files/ENCFF608OMD/@@download/ENCFF608OMD.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF136ZAK bed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF727MVC, ENCFF730JDO, ENCFF993NKI 991571 ENCODE Processing Pipeline cc242fc52ed013d53bcdf4a8ff38222b https://www.encodeproject.org/files/ENCFF136ZAK/@@download/ENCFF136ZAK.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF024UCN bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF730JDO 11454743 ENCODE Processing Pipeline a0cbb20bb9480d6b7129b6a051b4e904 https://www.encodeproject.org/files/ENCFF024UCN/@@download/ENCFF024UCN.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF087FEM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF136ZAK 1662612 ENCODE Processing Pipeline adfd5eeee21e37e8a0c1edaffb729075 https://www.encodeproject.org/files/ENCFF087FEM/@@download/ENCFF087FEM.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF613NFK bigWig fold change over control ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF519LBB, ENCFF783NTR, ENCFF788YCK 554576285 ENCODE Processing Pipeline fff56c196b6566a6f7c9bf3679ec2c11 https://www.encodeproject.org/files/ENCFF613NFK/@@download/ENCFF613NFK.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF117QQB bigWig fold change over control ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF783NTR, ENCFF788YCK 417897768 ENCODE Processing Pipeline e9530dce35dcdc5780280da3d0ce5a6c https://www.encodeproject.org/files/ENCFF117QQB/@@download/ENCFF117QQB.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF533FQZ bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF680YPK 11055127 ENCODE Processing Pipeline de866f7f36ca4fe9408576e662fa589e https://www.encodeproject.org/files/ENCFF533FQZ/@@download/ENCFF533FQZ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF343SOC bigWig signal p-value ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF519LBB, ENCFF783NTR 398956225 ENCODE Processing Pipeline 92931769674cb8da79f67817b3b077df https://www.encodeproject.org/files/ENCFF343SOC/@@download/ENCFF343SOC.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF035JRE bigWig fold change over control ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF519LBB, ENCFF783NTR 219825984 ENCODE Processing Pipeline 6066d54d204f70a2e460cfff25b1fd22 https://www.encodeproject.org/files/ENCFF035JRE/@@download/ENCFF035JRE.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF189TSY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF700ILD 1695393 ENCODE Processing Pipeline 0b2c58c2fdbd7992fbe6feadfcc592b3 https://www.encodeproject.org/files/ENCFF189TSY/@@download/ENCFF189TSY.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF009MRG bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF519LBB, ENCFF783NTR, ENCFF788YCK 5067397 ENCODE Processing Pipeline a45c4e8363dc4a44744236df33d939b0 https://www.encodeproject.org/files/ENCFF009MRG/@@download/ENCFF009MRG.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF696LSG bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF507VHP 9982259 ENCODE Processing Pipeline 8be41548a1f72cb9e6ae605c8b7b4fdb https://www.encodeproject.org/files/ENCFF696LSG/@@download/ENCFF696LSG.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF680YPK bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF783NTR, ENCFF788YCK 4426464 ENCODE Processing Pipeline 7d41c9c627502dd068266c2530142b6d https://www.encodeproject.org/files/ENCFF680YPK/@@download/ENCFF680YPK.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF840YTI bigWig signal p-value ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF783NTR, ENCFF788YCK 446296841 ENCODE Processing Pipeline 7e9376cd2997b00e74f611345a9f6a67 https://www.encodeproject.org/files/ENCFF840YTI/@@download/ENCFF840YTI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF817RWW bigWig signal p-value ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF519LBB, ENCFF783NTR, ENCFF788YCK 417249574 ENCODE Processing Pipeline 9339e487d18f9a38c34d1ef377efd69f https://www.encodeproject.org/files/ENCFF817RWW/@@download/ENCFF817RWW.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF507VHP bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF519LBB, ENCFF783NTR 4243444 ENCODE Processing Pipeline 5beeef7135e9f5251327dee9b9ae1a12 https://www.encodeproject.org/files/ENCFF507VHP/@@download/ENCFF507VHP.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF052SPT bigBed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF009MRG 11542840 ENCODE Processing Pipeline 7ed09bed4afde97c41a4bc159b3db4e5 https://www.encodeproject.org/files/ENCFF052SPT/@@download/ENCFF052SPT.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF700ILD bed narrowPeak optimal idr thresholded peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF009MRG, ENCFF507VHP, ENCFF680YPK 1007156 ENCODE Processing Pipeline 7b2e0a041b8477ea6dab8a9cee310a18 https://www.encodeproject.org/files/ENCFF700ILD/@@download/ENCFF700ILD.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF959GCL fastq reads ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 1 ENCFF260FNX 2083142417 Michael Snyder, Stanford 04d23d8d629717aeba236f3b2793c9fe https://www.encodeproject.org/files/ENCFF959GCL/@@download/ENCFF959GCL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF260FNX fastq reads ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 2 ENCFF959GCL 2152197375 Michael Snyder, Stanford 59cf02a7dee786ea4927fa42730ede4c https://www.encodeproject.org/files/ENCFF260FNX/@@download/ENCFF260FNX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF079YYN bam unfiltered alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF260FNX, ENCFF807MUK, ENCFF959GCL 4677795421 ENCODE Processing Pipeline 7fb95daba47aaac395fbbc9f8a061a4e https://www.encodeproject.org/files/ENCFF079YYN/@@download/ENCFF079YYN.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF592IUH bam unfiltered alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF260FNX, ENCFF643CGH, ENCFF959GCL 4680523976 ENCODE Processing Pipeline 0f62326b3e294e16c43a29c08a6f6053 https://www.encodeproject.org/files/ENCFF592IUH/@@download/ENCFF592IUH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF242ZAW bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF260FNX, ENCFF807MUK, ENCFF959GCL 3859979321 ENCODE Processing Pipeline 1650a63bcbe4f60ca1f1e862d145d08b https://www.encodeproject.org/files/ENCFF242ZAW/@@download/ENCFF242ZAW.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF646AXJ bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF260FNX, ENCFF643CGH, ENCFF959GCL 3862510346 ENCODE Processing Pipeline 981da79a37a77dc9fbc82cfb6ed5ceb1 https://www.encodeproject.org/files/ENCFF646AXJ/@@download/ENCFF646AXJ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF145IAB bigWig signal p-value ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF242ZAW 1209629259 ENCODE Processing Pipeline 720902522eb4dd0f89b56ce302156e20 https://www.encodeproject.org/files/ENCFF145IAB/@@download/ENCFF145IAB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF808RYL bigWig signal p-value ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF646AXJ 1099037999 ENCODE Processing Pipeline 3f6f989dc47f401cbade9a7cc05cb22d https://www.encodeproject.org/files/ENCFF808RYL/@@download/ENCFF808RYL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF479HII bigWig fold change over control ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF242ZAW 1262269110 ENCODE Processing Pipeline b198d7d79c76a59605202e8c38c40c21 https://www.encodeproject.org/files/ENCFF479HII/@@download/ENCFF479HII.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF350TJH bigWig fold change over control ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF646AXJ 1264153903 ENCODE Processing Pipeline 0359f0b2ab479bbf4c93a459c190a01c https://www.encodeproject.org/files/ENCFF350TJH/@@download/ENCFF350TJH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF535WCA bigBed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF360FBE 13519413 ENCODE Processing Pipeline 3278335a12fa49f7dd0af11d2b06a126 https://www.encodeproject.org/files/ENCFF535WCA/@@download/ENCFF535WCA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF977RNO bigBed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF914LFF 13531091 ENCODE Processing Pipeline 460f148d6efa25491b94edfcf01349e2 https://www.encodeproject.org/files/ENCFF977RNO/@@download/ENCFF977RNO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF555ESZ fastq reads ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 1 ENCFF948WTZ 2444652105 Michael Snyder, Stanford a60472ea04916c9ab4aaed37b908586d https://www.encodeproject.org/files/ENCFF555ESZ/@@download/ENCFF555ESZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF948WTZ fastq reads ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 2 ENCFF555ESZ 2444415626 Michael Snyder, Stanford 5ed8d1e3f5b01487a49f7252cb29529b https://www.encodeproject.org/files/ENCFF948WTZ/@@download/ENCFF948WTZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF518UZH bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF555ESZ, ENCFF807MUK, ENCFF948WTZ 4333270585 ENCODE Processing Pipeline 1400e992eae452db3a42eab839a53ffb https://www.encodeproject.org/files/ENCFF518UZH/@@download/ENCFF518UZH.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF623MZE bam unfiltered alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF555ESZ, ENCFF807MUK, ENCFF948WTZ 4847529377 ENCODE Processing Pipeline f4042e1f2c615fc11a7cbae11539730a https://www.encodeproject.org/files/ENCFF623MZE/@@download/ENCFF623MZE.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF218IUB bam unfiltered alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF555ESZ, ENCFF643CGH, ENCFF948WTZ 4853444280 ENCODE Processing Pipeline 8185acbe0c6c61919fb64b74182a52a7 https://www.encodeproject.org/files/ENCFF218IUB/@@download/ENCFF218IUB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF051NAE bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF555ESZ, ENCFF643CGH, ENCFF948WTZ 4331719568 ENCODE Processing Pipeline a92d41a8a5ee398cdb3fe4ffe129917f https://www.encodeproject.org/files/ENCFF051NAE/@@download/ENCFF051NAE.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF496KSC bigWig signal p-value ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF518UZH 1451016820 ENCODE Processing Pipeline c8e2106830d588519ac0d9d575d3d019 https://www.encodeproject.org/files/ENCFF496KSC/@@download/ENCFF496KSC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF494WVT bigWig signal p-value ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF051NAE 1476471892 ENCODE Processing Pipeline b6f5b14832d56bba2eab54e9852ae82a https://www.encodeproject.org/files/ENCFF494WVT/@@download/ENCFF494WVT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF879EKO bigWig fold change over control ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF518UZH 1314933732 ENCODE Processing Pipeline 58e70b0f09f5ef060b0574d3370810a5 https://www.encodeproject.org/files/ENCFF879EKO/@@download/ENCFF879EKO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF119CVV bigWig signal p-value ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF051NAE, ENCFF646AXJ 1849918736 ENCODE Processing Pipeline d2953f75249c1b49e08c85badbd0b8e5 https://www.encodeproject.org/files/ENCFF119CVV/@@download/ENCFF119CVV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF772HLJ bigWig signal p-value ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF242ZAW, ENCFF518UZH 1556848869 ENCODE Processing Pipeline b082f94f496fbf335592b689646962e4 https://www.encodeproject.org/files/ENCFF772HLJ/@@download/ENCFF772HLJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF476DMR bigWig fold change over control ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF051NAE 1314911542 ENCODE Processing Pipeline 5177874d8a9c3ddd95a55cfaf99b8b22 https://www.encodeproject.org/files/ENCFF476DMR/@@download/ENCFF476DMR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF448EVU bigWig fold change over control ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF242ZAW, ENCFF518UZH 1872168118 ENCODE Processing Pipeline e644cfd252f7bb2dd197b0e13d258933 https://www.encodeproject.org/files/ENCFF448EVU/@@download/ENCFF448EVU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF348EOC bigWig fold change over control ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF051NAE, ENCFF646AXJ 1883575682 ENCODE Processing Pipeline e0b9014979ca6e3864a74627615a5e7d https://www.encodeproject.org/files/ENCFF348EOC/@@download/ENCFF348EOC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF605OOH bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF051NAE 6535014 ENCODE Processing Pipeline 30662a646b9942ffd5edba05328abd29 https://www.encodeproject.org/files/ENCFF605OOH/@@download/ENCFF605OOH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF662BQU bigBed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF057AWT 13290956 ENCODE Processing Pipeline 0ad3674c13034b9c1db155417b19d08f https://www.encodeproject.org/files/ENCFF662BQU/@@download/ENCFF662BQU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF057AWT bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF051NAE, ENCFF646AXJ 7096452 ENCODE Processing Pipeline 8e9bb300911a0aa11469a859f939da1b https://www.encodeproject.org/files/ENCFF057AWT/@@download/ENCFF057AWT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF360FBE bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF242ZAW 6615565 ENCODE Processing Pipeline f61e663c632fb978904ba923371f6fd6 https://www.encodeproject.org/files/ENCFF360FBE/@@download/ENCFF360FBE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF914LFF bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF646AXJ 6613904 ENCODE Processing Pipeline 0cfe1556954376cca2547b3ddb8b9a88 https://www.encodeproject.org/files/ENCFF914LFF/@@download/ENCFF914LFF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF866CSL bigBed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF605OOH 13413097 ENCODE Processing Pipeline 161ad627dd19eb828422e328b85a441f https://www.encodeproject.org/files/ENCFF866CSL/@@download/ENCFF866CSL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF646VZK bigBed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF823NKG 13283116 ENCODE Processing Pipeline a98817d43e1cc8a34c320a79941cf93d https://www.encodeproject.org/files/ENCFF646VZK/@@download/ENCFF646VZK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF518HWU bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF518UZH 6542649 ENCODE Processing Pipeline 0fa0ac3935147e6b1fa544a07a6ed22e https://www.encodeproject.org/files/ENCFF518HWU/@@download/ENCFF518HWU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF823NKG bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF242ZAW, ENCFF518UZH 7100847 ENCODE Processing Pipeline f5f6a307a69f465b4b50e612397aa7ab https://www.encodeproject.org/files/ENCFF823NKG/@@download/ENCFF823NKG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF905LUG bigBed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF518HWU 13405710 ENCODE Processing Pipeline 3a89b0c0f76797cc2411b5b5603cd694 https://www.encodeproject.org/files/ENCFF905LUG/@@download/ENCFF905LUG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF606ICT bigBed narrowPeak conservative idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF412FNG 282027 ENCODE Processing Pipeline 98694493e2f85c5f1b8a18e4c69ecfb9 https://www.encodeproject.org/files/ENCFF606ICT/@@download/ENCFF606ICT.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF442TDC bigBed narrowPeak optimal idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF355IUF 529237 ENCODE Processing Pipeline 2193bdea298b4afc40950206c69a7b7d https://www.encodeproject.org/files/ENCFF442TDC/@@download/ENCFF442TDC.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF220OEU bed narrowPeak conservative idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF360FBE, ENCFF518HWU, ENCFF823NKG 123951 ENCODE Processing Pipeline 91ef0ec79bdea834108d95fcb64851a2 https://www.encodeproject.org/files/ENCFF220OEU/@@download/ENCFF220OEU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF592OWO bed narrowPeak optimal idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF360FBE, ENCFF518HWU, ENCFF823NKG 290130 ENCODE Processing Pipeline d2950f567b50fa9114f3e4aca019f33d https://www.encodeproject.org/files/ENCFF592OWO/@@download/ENCFF592OWO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF412FNG bed narrowPeak conservative idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF057AWT, ENCFF419RSJ, ENCFF605OOH, ENCFF914LFF 123972 ENCODE Processing Pipeline 27c9314b030a98498224b80e5cbf8fea https://www.encodeproject.org/files/ENCFF412FNG/@@download/ENCFF412FNG.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF355IUF bed narrowPeak optimal idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF057AWT, ENCFF419RSJ, ENCFF605OOH, ENCFF914LFF 284854 ENCODE Processing Pipeline d9d983fe3b16c74292b43ffaee971a9c https://www.encodeproject.org/files/ENCFF355IUF/@@download/ENCFF355IUF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF895BYL bigBed narrowPeak conservative idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF220OEU 281034 ENCODE Processing Pipeline a0b9db85ad7cf763f1e7586ac92ebb4a https://www.encodeproject.org/files/ENCFF895BYL/@@download/ENCFF895BYL.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF528PSK bigBed narrowPeak optimal idr thresholded peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF592OWO 536233 ENCODE Processing Pipeline c4d3b16590d7141502366e6f66f4e93c https://www.encodeproject.org/files/ENCFF528PSK/@@download/ENCFF528PSK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF000RSN bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RSR 327119292 Vishwanath Iyer, UTA 7b7e1ee1d1761a9bfce909a3b9457c92 https://www.encodeproject.org/files/ENCFF000RSN/@@download/ENCFF000RSN.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000RSO bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RST 335051238 Vishwanath Iyer, UTA 051d25b8dea30181a64ddc9e1088a9dc https://www.encodeproject.org/files/ENCFF000RSO/@@download/ENCFF000RSO.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000RSP bigWig base overlap signal ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 107041293 Vishwanath Iyer, UTA e9bbf86b1b80a401cdcb6b16327b5297 https://www.encodeproject.org/files/ENCFF000RSP/@@download/ENCFF000RSP.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF000RSQ bigBed narrowPeak peaks ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USU 612148 Vishwanath Iyer, UTA 1f2d21f91dd205359b11f1d15fdb637a https://www.encodeproject.org/files/ENCFF000RSQ/@@download/ENCFF000RSQ.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000RSR fastq reads ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 312076155 Vishwanath Iyer, UTA 0174582a01bae667f78c9c297bd1ea3e https://www.encodeproject.org/files/ENCFF000RSR/@@download/ENCFF000RSR.fastq.gz Illumina Genome Analyzer /files/ENCFF000RTF/ released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000RSS bigWig signal ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 3133155780 Vishwanath Iyer, UTA 8c2fdb3ea1cca541b094847c75db51b9 https://www.encodeproject.org/files/ENCFF000RSS/@@download/ENCFF000RSS.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF000RST fastq reads ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 320715991 Vishwanath Iyer, UTA 0a68c601fabbdb3422d41842e2e29842 https://www.encodeproject.org/files/ENCFF000RST/@@download/ENCFF000RST.fastq.gz Illumina Genome Analyzer /files/ENCFF000RTF/ released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000RSU tar validation ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 50639238 Vishwanath Iyer, UTA 98b048f424a4efa688b855649491c915 https://www.encodeproject.org/files/ENCFF000RSU/@@download/ENCFF000RSU.tar.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF001USU bed narrowPeak peaks ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 272373 Vishwanath Iyer, UTA fdb401701d25d6e7aa7309739253846d https://www.encodeproject.org/files/ENCFF001USU/@@download/ENCFF001USU.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF002DAT bed narrowPeak optimal idr thresholded peaks ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 65300 ENCODE Consortium Analysis Working Group f4de50376077a81956bb99bdc2acd914 https://www.encodeproject.org/files/ENCFF002DAT/@@download/ENCFF002DAT.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF343WLW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAT 179707 ENCODE Consortium f7f0a0fcf2eb1523085f249f64247632 https://www.encodeproject.org/files/ENCFF343WLW/@@download/ENCFF343WLW.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF598LKD bam unfiltered alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RSR, ENCFF807MUK 406357686 ENCODE Processing Pipeline 0194419d3d37166fa98cfe8085863543 https://www.encodeproject.org/files/ENCFF598LKD/@@download/ENCFF598LKD.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF282PAU bam unfiltered alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RST, ENCFF643CGH 417181966 ENCODE Processing Pipeline 217b890e7da12552591893a2b607b70d https://www.encodeproject.org/files/ENCFF282PAU/@@download/ENCFF282PAU.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF927VIX bam unfiltered alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RST, ENCFF807MUK 415751995 ENCODE Processing Pipeline cb9bff8e32a98e5cc2485feb29abfd85 https://www.encodeproject.org/files/ENCFF927VIX/@@download/ENCFF927VIX.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF666LSS bam unfiltered alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RSR, ENCFF643CGH 407868984 ENCODE Processing Pipeline 66cc315ec1376c1530058fcbadd221c2 https://www.encodeproject.org/files/ENCFF666LSS/@@download/ENCFF666LSS.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF848YQQ bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RSR, ENCFF807MUK 270872121 ENCODE Processing Pipeline c84714c266e660776e9bd3362441874e https://www.encodeproject.org/files/ENCFF848YQQ/@@download/ENCFF848YQQ.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF826QDC bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RST, ENCFF807MUK 271387919 ENCODE Processing Pipeline a17a24f8a16a26ae7b61c1f9157df007 https://www.encodeproject.org/files/ENCFF826QDC/@@download/ENCFF826QDC.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF393ULV bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RST, ENCFF643CGH 271188402 ENCODE Processing Pipeline d93fb624f75bcc5853416ab85f82e8f2 https://www.encodeproject.org/files/ENCFF393ULV/@@download/ENCFF393ULV.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF736JCX bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RSR, ENCFF643CGH 270679105 ENCODE Processing Pipeline 13f7a6e1c34d0eb6dfba4244a650dfa8 https://www.encodeproject.org/files/ENCFF736JCX/@@download/ENCFF736JCX.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF784QZI bam unfiltered alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 100 ENCFF469EAQ, ENCFF807MUK, ENCFF820AHB 4317142224 ENCODE Processing Pipeline d8e34c5fd022cd571479ffa393435e94 https://www.encodeproject.org/files/ENCFF784QZI/@@download/ENCFF784QZI.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF820AHB fastq reads ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 1 ENCFF469EAQ 2027211268 Michael Snyder, Stanford ab4b97c043d0cc61141755c049d1d515 https://www.encodeproject.org/files/ENCFF820AHB/@@download/ENCFF820AHB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance experiment not submitted to GEO ENCFF469EAQ fastq reads ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 2 ENCFF820AHB 1954017440 Michael Snyder, Stanford 658b5f43475b8bbfa9a49ab179e2d4c6 https://www.encodeproject.org/files/ENCFF469EAQ/@@download/ENCFF469EAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance experiment not submitted to GEO ENCFF814UHO bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 100 ENCFF469EAQ, ENCFF807MUK, ENCFF820AHB 3523253443 ENCODE Processing Pipeline 39614cc96bcc4067efa94085412bba25 https://www.encodeproject.org/files/ENCFF814UHO/@@download/ENCFF814UHO.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF952UEN fastq reads ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF245SAZ 2413880784 Michael Snyder, Stanford 763d5b4efbd1c0a8ccf29cf977e5dfa2 https://www.encodeproject.org/files/ENCFF952UEN/@@download/ENCFF952UEN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance experiment not submitted to GEO ENCFF245SAZ fastq reads ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF952UEN 2453199620 Michael Snyder, Stanford 58240827d963d3c2d7c00a5ab5c8f4a5 https://www.encodeproject.org/files/ENCFF245SAZ/@@download/ENCFF245SAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance experiment not submitted to GEO ENCFF783UKL bam unfiltered alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 100 ENCFF469EAQ, ENCFF643CGH, ENCFF820AHB 4319422359 ENCODE Processing Pipeline b41c1670553474abb9226013281ebbac https://www.encodeproject.org/files/ENCFF783UKL/@@download/ENCFF783UKL.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF438CHI bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 100 ENCFF469EAQ, ENCFF643CGH, ENCFF820AHB 3525059172 ENCODE Processing Pipeline 70a4c166d9b4c4325a1baa91644dcd85 https://www.encodeproject.org/files/ENCFF438CHI/@@download/ENCFF438CHI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF344FYF bam unfiltered alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 101 ENCFF245SAZ, ENCFF807MUK, ENCFF952UEN 4792990068 ENCODE Processing Pipeline 96f059fd8dd124bbd031f8cd950c03d6 https://www.encodeproject.org/files/ENCFF344FYF/@@download/ENCFF344FYF.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF949SZU bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 101 ENCFF245SAZ, ENCFF807MUK, ENCFF952UEN 4200051124 ENCODE Processing Pipeline d0066360e1826dcb1f08e7b859832f0a https://www.encodeproject.org/files/ENCFF949SZU/@@download/ENCFF949SZU.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF765XMC bam unfiltered alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 101 ENCFF245SAZ, ENCFF643CGH, ENCFF952UEN 4796429990 ENCODE Processing Pipeline 94abf25ebbeb2c8640987c0204091f61 https://www.encodeproject.org/files/ENCFF765XMC/@@download/ENCFF765XMC.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF408POL bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 101 ENCFF245SAZ, ENCFF643CGH, ENCFF952UEN 4200629403 ENCODE Processing Pipeline 2868d09f6cb3f00bf5b7a13409f225b7 https://www.encodeproject.org/files/ENCFF408POL/@@download/ENCFF408POL.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF467MXH bigWig signal p-value ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF408POL 971212613 ENCODE Processing Pipeline 0b71172773e39fdeb0fb9fa226aac912 https://www.encodeproject.org/files/ENCFF467MXH/@@download/ENCFF467MXH.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF523QZS bigWig signal p-value ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF408POL, ENCFF438CHI, ENCFF910IKB 1845962167 ENCODE Processing Pipeline 51c7d7425a444819d92ae3b9f3f32ece https://www.encodeproject.org/files/ENCFF523QZS/@@download/ENCFF523QZS.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF393NUT bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF408POL 6606668 ENCODE Processing Pipeline b785c57f777cffeacb288b5cd7f9f6c0 https://www.encodeproject.org/files/ENCFF393NUT/@@download/ENCFF393NUT.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF181NNL bed narrowPeak conservative idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF393NUT, ENCFF419RSJ, ENCFF622WHS, ENCFF783DBJ 267651 ENCODE Processing Pipeline eb0c6fe3501667bfc78fc91e4ff91835 https://www.encodeproject.org/files/ENCFF181NNL/@@download/ENCFF181NNL.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF849JWG bigWig signal p-value ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF438CHI, ENCFF910IKB 1069158149 ENCODE Processing Pipeline 66ccf19c04db56032597016f141c49d5 https://www.encodeproject.org/files/ENCFF849JWG/@@download/ENCFF849JWG.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF977TQX bigWig fold change over control ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF408POL 1112411183 ENCODE Processing Pipeline 9a99957859c20221c7e2244c90760b5a https://www.encodeproject.org/files/ENCFF977TQX/@@download/ENCFF977TQX.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF622WHS bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF408POL, ENCFF438CHI, ENCFF910IKB 7185563 ENCODE Processing Pipeline f2631d5cded93c2f372bc2706ddac124 https://www.encodeproject.org/files/ENCFF622WHS/@@download/ENCFF622WHS.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF040KQE bigBed narrowPeak optimal idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF537VKZ 917495 ENCODE Processing Pipeline f400e26337fd598f079f5e430206eaa3 https://www.encodeproject.org/files/ENCFF040KQE/@@download/ENCFF040KQE.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF783DBJ bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF438CHI, ENCFF910IKB 7013151 ENCODE Processing Pipeline 971e86f12e108610f59725100e5366d0 https://www.encodeproject.org/files/ENCFF783DBJ/@@download/ENCFF783DBJ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF246TAS bigBed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF622WHS 12740307 ENCODE Processing Pipeline f43618feaf58f0532182b770a28dcd51 https://www.encodeproject.org/files/ENCFF246TAS/@@download/ENCFF246TAS.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF201BJQ bigBed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF783DBJ 12699697 ENCODE Processing Pipeline 2cfc4a945f01518faf56950c63469e33 https://www.encodeproject.org/files/ENCFF201BJQ/@@download/ENCFF201BJQ.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF118RGK bigBed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF393NUT 13199645 ENCODE Processing Pipeline 34533da7578f43a27b401fb6875c748d https://www.encodeproject.org/files/ENCFF118RGK/@@download/ENCFF118RGK.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF440EJU bigBed narrowPeak conservative idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF181NNL 621700 ENCODE Processing Pipeline bb0838ff7432440c25a66d9bdc82f2b8 https://www.encodeproject.org/files/ENCFF440EJU/@@download/ENCFF440EJU.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF537VKZ bed narrowPeak optimal idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF393NUT, ENCFF419RSJ, ENCFF622WHS, ENCFF783DBJ 456441 ENCODE Processing Pipeline 4576691925fb5ba9366e3c4086bd14b2 https://www.encodeproject.org/files/ENCFF537VKZ/@@download/ENCFF537VKZ.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF229QVC bigWig fold change over control ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF438CHI, ENCFF910IKB 1056174841 ENCODE Processing Pipeline 6db6ba88a48948fa0add6485b521ae4d https://www.encodeproject.org/files/ENCFF229QVC/@@download/ENCFF229QVC.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF747XEM bigWig fold change over control ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF408POL, ENCFF438CHI, ENCFF910IKB 2037812647 ENCODE Processing Pipeline 0f30d7cfefe6ac8f3aff1c1d49d99394 https://www.encodeproject.org/files/ENCFF747XEM/@@download/ENCFF747XEM.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF802BAC bigWig signal p-value ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF949SZU 1116164107 ENCODE Processing Pipeline 975100dccf12bc92287fda9c40cf9647 https://www.encodeproject.org/files/ENCFF802BAC/@@download/ENCFF802BAC.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF400FLC bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF581ZJL, ENCFF814UHO 7085731 ENCODE Processing Pipeline fb326ecec20c455e0db75b1b0834f938 https://www.encodeproject.org/files/ENCFF400FLC/@@download/ENCFF400FLC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF598KOI bigBed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF403MEX 13188503 ENCODE Processing Pipeline 2f8e163955adef1da5ecdc04abe5aa3d https://www.encodeproject.org/files/ENCFF598KOI/@@download/ENCFF598KOI.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF663KFV bed narrowPeak conservative idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF209OUR, ENCFF400FLC, ENCFF403MEX 279195 ENCODE Processing Pipeline 60312cd43e0af0f5a7f1af7525cfc229 https://www.encodeproject.org/files/ENCFF663KFV/@@download/ENCFF663KFV.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF962LRB bigBed narrowPeak conservative idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF663KFV 637355 ENCODE Processing Pipeline 366ecfb2de304d10f19cf5f33eab6739 https://www.encodeproject.org/files/ENCFF962LRB/@@download/ENCFF962LRB.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF269EWV bigWig signal p-value ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF581ZJL, ENCFF814UHO 1102924357 ENCODE Processing Pipeline ee3cbaef41465ee7ca4590c913f98c0e https://www.encodeproject.org/files/ENCFF269EWV/@@download/ENCFF269EWV.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF258EEY bigWig fold change over control ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF581ZJL, ENCFF814UHO 1071646722 ENCODE Processing Pipeline 660b787c4cd137fdbd995a38b4f224a0 https://www.encodeproject.org/files/ENCFF258EEY/@@download/ENCFF258EEY.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF387UQS bigWig signal p-value ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF814UHO, ENCFF949SZU 1884256553 ENCODE Processing Pipeline 960b7312c07d8432db82cd5b34ea334f https://www.encodeproject.org/files/ENCFF387UQS/@@download/ENCFF387UQS.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF686QMR bigWig fold change over control ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF949SZU 1112829093 ENCODE Processing Pipeline 926d9fd4f5bdaa542ec1e27d4531e0fb https://www.encodeproject.org/files/ENCFF686QMR/@@download/ENCFF686QMR.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF209OUR bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF814UHO, ENCFF949SZU 7233834 ENCODE Processing Pipeline 657cf754464275113085ecf74d134c93 https://www.encodeproject.org/files/ENCFF209OUR/@@download/ENCFF209OUR.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF863TCQ bigWig fold change over control ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF814UHO, ENCFF949SZU 1993382494 ENCODE Processing Pipeline c24ba533be0e38405b8802ac7f5e116d https://www.encodeproject.org/files/ENCFF863TCQ/@@download/ENCFF863TCQ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF774QKS bed narrowPeak optimal idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF209OUR, ENCFF400FLC, ENCFF403MEX 479386 ENCODE Processing Pipeline cc53d3d9760a5e427276184bfc555bbe https://www.encodeproject.org/files/ENCFF774QKS/@@download/ENCFF774QKS.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF403MEX bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF949SZU 6602302 ENCODE Processing Pipeline 7d86383e5b202945b3db2e73cdce2667 https://www.encodeproject.org/files/ENCFF403MEX/@@download/ENCFF403MEX.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF914MTE bigBed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF400FLC 12771634 ENCODE Processing Pipeline 19e79f16f036e66155120ee97c5232d6 https://www.encodeproject.org/files/ENCFF914MTE/@@download/ENCFF914MTE.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF395AOY bigBed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF209OUR 12787588 ENCODE Processing Pipeline 8083bbaace281928225265ab6b55ab00 https://www.encodeproject.org/files/ENCFF395AOY/@@download/ENCFF395AOY.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF418VGR bigBed narrowPeak optimal idr thresholded peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF774QKS 945322 ENCODE Processing Pipeline 50f198bdc7641d9e165957ae66605db2 https://www.encodeproject.org/files/ENCFF418VGR/@@download/ENCFF418VGR.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF002EDE fastq reads ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 924121541 Michael Snyder, Stanford 467fa4cffca12c50e6a9397297bac191 https://www.encodeproject.org/files/ENCFF002EDE/@@download/ENCFF002EDE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECN/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF002EDG fastq reads ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 743871537 Michael Snyder, Stanford 0208c3103d23d862c6d08cfcbb14e37a https://www.encodeproject.org/files/ENCFF002EDG/@@download/ENCFF002EDG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECO/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF414XZG bam unfiltered alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDE, ENCFF807MUK 1123899902 ENCODE Processing Pipeline dd3d7ba9a367ed577f5ae294384b8a18 https://www.encodeproject.org/files/ENCFF414XZG/@@download/ENCFF414XZG.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF326VNO bam unfiltered alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDG, ENCFF807MUK 1075934749 ENCODE Processing Pipeline 9c032011e32ae2c1ecf1a5bb8d091261 https://www.encodeproject.org/files/ENCFF326VNO/@@download/ENCFF326VNO.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF092PCB bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDE, ENCFF807MUK 815079731 ENCODE Processing Pipeline 9956a09ac4299e145236b2edf3378ff0 https://www.encodeproject.org/files/ENCFF092PCB/@@download/ENCFF092PCB.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF952XCP bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDG, ENCFF807MUK 738262639 ENCODE Processing Pipeline 6285ff2d25ecc11e6985924183911767 https://www.encodeproject.org/files/ENCFF952XCP/@@download/ENCFF952XCP.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF362IXP bigWig signal p-value ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF092PCB, ENCFF316UXC 618491291 ENCODE Processing Pipeline 9d6d52c134352d00e8e5c4771ad38d19 https://www.encodeproject.org/files/ENCFF362IXP/@@download/ENCFF362IXP.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF474BSS bigWig signal p-value ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 467254962 ENCODE Processing Pipeline b593994902b8386060447fefd06575dc https://www.encodeproject.org/files/ENCFF474BSS/@@download/ENCFF474BSS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF796RLG bigWig fold change over control ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF092PCB, ENCFF316UXC 489164463 ENCODE Processing Pipeline 5248f10f85e1312983ee59b98fcaffa3 https://www.encodeproject.org/files/ENCFF796RLG/@@download/ENCFF796RLG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF909QMO bigWig fold change over control ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 407113906 ENCODE Processing Pipeline 21d67091b625ecdd6f36861c3b6a7bd7 https://www.encodeproject.org/files/ENCFF909QMO/@@download/ENCFF909QMO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF300BYZ bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 5441262 ENCODE Processing Pipeline 5b3cb310ec86c123168a2c4e64ccff0a https://www.encodeproject.org/files/ENCFF300BYZ/@@download/ENCFF300BYZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF389XPF bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF092PCB, ENCFF316UXC 5299369 ENCODE Processing Pipeline 54a53e5f971224cb57b7ca10cb9f0ac7 https://www.encodeproject.org/files/ENCFF389XPF/@@download/ENCFF389XPF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF239COT bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF300BYZ 13253460 ENCODE Processing Pipeline 618958e8a24e03b19fa89e4150f3048f https://www.encodeproject.org/files/ENCFF239COT/@@download/ENCFF239COT.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF849FDT bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF389XPF 11175016 ENCODE Processing Pipeline bc87d3145f33ae67d4c8a1949d8deb0c https://www.encodeproject.org/files/ENCFF849FDT/@@download/ENCFF849FDT.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF946EJI bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDG, ENCFF643CGH 737845357 ENCODE Processing Pipeline 6c3ecceebf28063b366fbacf6c88eef3 https://www.encodeproject.org/files/ENCFF946EJI/@@download/ENCFF946EJI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF278VUO bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDE, ENCFF643CGH 814567834 ENCODE Processing Pipeline 512d82ea1fa3968f815f092e2aeff2d5 https://www.encodeproject.org/files/ENCFF278VUO/@@download/ENCFF278VUO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF920QFM bam unfiltered alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDG, ENCFF643CGH 1081239971 ENCODE Processing Pipeline 3757218b1cbf94bd8c5eb5cb7912afe4 https://www.encodeproject.org/files/ENCFF920QFM/@@download/ENCFF920QFM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF067OJF bam unfiltered alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDE, ENCFF643CGH 1128973195 ENCODE Processing Pipeline f1453db5a0eaa544b64c25e01dab0901 https://www.encodeproject.org/files/ENCFF067OJF/@@download/ENCFF067OJF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF719TJE bigWig signal p-value ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF278VUO, ENCFF459QXO 637792435 ENCODE Processing Pipeline a88c227271907650bf5d96fec459cbe6 https://www.encodeproject.org/files/ENCFF719TJE/@@download/ENCFF719TJE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF798AEH bigWig signal p-value ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF714ZPY, ENCFF946EJI 566245577 ENCODE Processing Pipeline e3cd3edbc953f24f3cb8cd243b44a630 https://www.encodeproject.org/files/ENCFF798AEH/@@download/ENCFF798AEH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF605FWG bigWig signal p-value ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278VUO, ENCFF459QXO, ENCFF714ZPY, ENCFF946EJI 1033780592 ENCODE Processing Pipeline b82297e029a1a02139258dc70f277c9b https://www.encodeproject.org/files/ENCFF605FWG/@@download/ENCFF605FWG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF594CSB bigWig fold change over control ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF278VUO, ENCFF459QXO 483407259 ENCODE Processing Pipeline 0766213c030e0a53b9169d03672a8572 https://www.encodeproject.org/files/ENCFF594CSB/@@download/ENCFF594CSB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF167BEA bigWig fold change over control ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF714ZPY, ENCFF946EJI 392646945 ENCODE Processing Pipeline 59a4960b7ff2519a7fe6477c5852b80e https://www.encodeproject.org/files/ENCFF167BEA/@@download/ENCFF167BEA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF868AOY bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF714ZPY, ENCFF946EJI 5196362 ENCODE Processing Pipeline 0b99474f77b55f7c9997285acc2d48a6 https://www.encodeproject.org/files/ENCFF868AOY/@@download/ENCFF868AOY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF019BVT bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF278VUO, ENCFF459QXO 5143129 ENCODE Processing Pipeline c78d7436e693639a95e1a0e446cde877 https://www.encodeproject.org/files/ENCFF019BVT/@@download/ENCFF019BVT.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF949BRD bigWig fold change over control ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278VUO, ENCFF459QXO, ENCFF714ZPY, ENCFF946EJI 1011032651 ENCODE Processing Pipeline 93f9f0a255907ec06428a183d642d3fd https://www.encodeproject.org/files/ENCFF949BRD/@@download/ENCFF949BRD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF341YIS bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF019BVT 11109972 ENCODE Processing Pipeline 9f06adfba72d0606c069a65f0072b93f https://www.encodeproject.org/files/ENCFF341YIS/@@download/ENCFF341YIS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF130MDN bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF936QYC 13465697 ENCODE Processing Pipeline f80906fe7dfbf5327217719225986b9d https://www.encodeproject.org/files/ENCFF130MDN/@@download/ENCFF130MDN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF936QYC bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278VUO, ENCFF459QXO, ENCFF714ZPY, ENCFF946EJI 6362009 ENCODE Processing Pipeline a4357c70889884e7285eb2c194683d09 https://www.encodeproject.org/files/ENCFF936QYC/@@download/ENCFF936QYC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF979KQB bed narrowPeak conservative idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019BVT, ENCFF419RSJ, ENCFF868AOY, ENCFF936QYC 239657 ENCODE Processing Pipeline 032b88e084dd82ce2a299f7f6f1893d0 https://www.encodeproject.org/files/ENCFF979KQB/@@download/ENCFF979KQB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF642XAV bigBed narrowPeak conservative idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF979KQB 472130 ENCODE Processing Pipeline c8b54ad3743894855f55eb5ef6f8165c https://www.encodeproject.org/files/ENCFF642XAV/@@download/ENCFF642XAV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF924KFU bed narrowPeak optimal idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019BVT, ENCFF419RSJ, ENCFF868AOY, ENCFF936QYC 382331 ENCODE Processing Pipeline c3f154fa317187c175afca9fc5f5ceda https://www.encodeproject.org/files/ENCFF924KFU/@@download/ENCFF924KFU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF215HTJ bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF868AOY 13147075 ENCODE Processing Pipeline bed60a3c3c1fa3e27ef6c58476e1d533 https://www.encodeproject.org/files/ENCFF215HTJ/@@download/ENCFF215HTJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF702ZNM bigBed narrowPeak optimal idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF924KFU 818808 ENCODE Processing Pipeline 4cfd5b9409cc5abd1c15de3efa1e9bb3 https://www.encodeproject.org/files/ENCFF702ZNM/@@download/ENCFF702ZNM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF289TVJ bigWig fold change over control ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF092PCB, ENCFF316UXC, ENCFF939XHK, ENCFF952XCP 995901692 ENCODE Processing Pipeline d00324ae3b2f52e177afa0a9707c4b4c https://www.encodeproject.org/files/ENCFF289TVJ/@@download/ENCFF289TVJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF606VKX bigWig signal p-value ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF092PCB, ENCFF316UXC, ENCFF939XHK, ENCFF952XCP 1055300457 ENCODE Processing Pipeline 863c1441374b37cf22acf876dcee700c https://www.encodeproject.org/files/ENCFF606VKX/@@download/ENCFF606VKX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF125VLX bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF092PCB, ENCFF316UXC 5125963 ENCODE Processing Pipeline 4071c3422e701bacf8b5834edf5190d4 https://www.encodeproject.org/files/ENCFF125VLX/@@download/ENCFF125VLX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF467DQG bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 5208926 ENCODE Processing Pipeline a2ea47320f68ff5aa0b871eaef64968c https://www.encodeproject.org/files/ENCFF467DQG/@@download/ENCFF467DQG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF671ILJ bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF125VLX 11082116 ENCODE Processing Pipeline 4d41849cde7391c5df1db2c48a9a30bc https://www.encodeproject.org/files/ENCFF671ILJ/@@download/ENCFF671ILJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF655GAZ bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF467DQG 13160255 ENCODE Processing Pipeline c1f55b6f0afbec96d61c4b269367d861 https://www.encodeproject.org/files/ENCFF655GAZ/@@download/ENCFF655GAZ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF612DMM bigBed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF023IGO 13463900 ENCODE Processing Pipeline 0fc75aa6b9adeb70087aa8065da0802f https://www.encodeproject.org/files/ENCFF612DMM/@@download/ENCFF612DMM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF023IGO bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF092PCB, ENCFF316UXC, ENCFF939XHK, ENCFF952XCP 6361371 ENCODE Processing Pipeline 66bce7d3512bf5f5a47f3ef6610525f3 https://www.encodeproject.org/files/ENCFF023IGO/@@download/ENCFF023IGO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF784YVX bed narrowPeak optimal idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF023IGO, ENCFF125VLX, ENCFF467DQG 390862 ENCODE Processing Pipeline b98b1c410b37001d2fca2870513dfffb https://www.encodeproject.org/files/ENCFF784YVX/@@download/ENCFF784YVX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF583XDA bed narrowPeak conservative idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF023IGO, ENCFF125VLX, ENCFF467DQG 238478 ENCODE Processing Pipeline e552b827a4d87d207c9bf47b49ffeb60 https://www.encodeproject.org/files/ENCFF583XDA/@@download/ENCFF583XDA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF803UTK bigBed narrowPeak conservative idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF583XDA 469732 ENCODE Processing Pipeline fdffee59d6cbe4d8ed05c56b02457e9c https://www.encodeproject.org/files/ENCFF803UTK/@@download/ENCFF803UTK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF240IVA bigBed narrowPeak optimal idr thresholded peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF784YVX 832562 ENCODE Processing Pipeline 66351a46bf4ea0866f151d7c4d3ccdec https://www.encodeproject.org/files/ENCFF240IVA/@@download/ENCFF240IVA.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF000PSL bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PST 746950859 Richard Myers, HAIB 55c0a25b0d3c98c95cf149c87acf1e34 https://www.encodeproject.org/files/ENCFF000PSL/@@download/ENCFF000PSL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PSM bigBed broadPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UIE 77491 Richard Myers, HAIB 6132846a1117000c9629e10a712618c9 https://www.encodeproject.org/files/ENCFF000PSM/@@download/ENCFF000PSM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PSN bigBed broadPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UIF 92700 Richard Myers, HAIB 3ad532367606dc2cdc86e5f1652554a3 https://www.encodeproject.org/files/ENCFF000PSN/@@download/ENCFF000PSN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PSO bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PSY 942007295 Richard Myers, HAIB 41af10ff8357165df730b8f8354c53ba https://www.encodeproject.org/files/ENCFF000PSO/@@download/ENCFF000PSO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PSQ bigWig raw signal ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 14631361 Richard Myers, HAIB b5ad25fad263c3ac00548625dd802f83 https://www.encodeproject.org/files/ENCFF000PSQ/@@download/ENCFF000PSQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PSR bigWig raw signal ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 4302484 Richard Myers, HAIB a5b8df829d367170d7dc0e3005f9b989 https://www.encodeproject.org/files/ENCFF000PSR/@@download/ENCFF000PSR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PST fastq reads ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 773525066 Richard Myers, HAIB f6c4f4bce873aee336425a7418c8feee https://www.encodeproject.org/files/ENCFF000PST/@@download/ENCFF000PST.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PSY fastq reads ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 889766438 Richard Myers, HAIB 7f4d2d312d0ac300b1652f07f6d38b92 https://www.encodeproject.org/files/ENCFF000PSY/@@download/ENCFF000PSY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UIE bed broadPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 20274 Richard Myers, HAIB 787744e4c9a5ad212041f5767aa17b0c https://www.encodeproject.org/files/ENCFF001UIE/@@download/ENCFF001UIE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UIF bed broadPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 31317 Richard Myers, HAIB 3af756481ff453307b62c801b2b29a1f https://www.encodeproject.org/files/ENCFF001UIF/@@download/ENCFF001UIF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF280TIY bam unfiltered alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PST, ENCFF643CGH 905746783 ENCODE Processing Pipeline 90a4c44597aed77b45fa3caa3414bc74 https://www.encodeproject.org/files/ENCFF280TIY/@@download/ENCFF280TIY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF015CKI bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PST, ENCFF643CGH 371897305 ENCODE Processing Pipeline e25a252f06fdad18e5d4c7bbc6011f04 https://www.encodeproject.org/files/ENCFF015CKI/@@download/ENCFF015CKI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF148ZDV bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSY, ENCFF643CGH 699288859 ENCODE Processing Pipeline 50f48e0d2be34b6b5244471754b9ce96 https://www.encodeproject.org/files/ENCFF148ZDV/@@download/ENCFF148ZDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF712OEW bam unfiltered alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSY, ENCFF643CGH 1114817884 ENCODE Processing Pipeline d58dbe10caba6ae8ce7ba4d6c5302930 https://www.encodeproject.org/files/ENCFF712OEW/@@download/ENCFF712OEW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF760RWX bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PST, ENCFF807MUK 372060688 ENCODE Processing Pipeline e7ee799b36cc4d7ecc115dfa18692364 https://www.encodeproject.org/files/ENCFF760RWX/@@download/ENCFF760RWX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF105GEI bam unfiltered alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PST, ENCFF807MUK 903466072 ENCODE Processing Pipeline 3de7b8b5febfadb003c84af9ba3f92f5 https://www.encodeproject.org/files/ENCFF105GEI/@@download/ENCFF105GEI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF307ZMA bam unfiltered alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSY, ENCFF807MUK 1110533079 ENCODE Processing Pipeline 844d69401d3aa400113fb1883360c389 https://www.encodeproject.org/files/ENCFF307ZMA/@@download/ENCFF307ZMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF616LIW bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSY, ENCFF807MUK 699668418 ENCODE Processing Pipeline 1b10803f83ff1f849cff7386c1a34db4 https://www.encodeproject.org/files/ENCFF616LIW/@@download/ENCFF616LIW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF556VWG bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015CKI, ENCFF285LVE 2882635 ENCODE Processing Pipeline 32ba296acd409bb3845a596deb844e9f https://www.encodeproject.org/files/ENCFF556VWG/@@download/ENCFF556VWG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF943WRA bed narrowPeak optimal idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF328MZT, ENCFF330HXJ, ENCFF419RSJ, ENCFF556VWG 41370 ENCODE Processing Pipeline e74f575154c0e01e60cb2d1a37c11d27 https://www.encodeproject.org/files/ENCFF943WRA/@@download/ENCFF943WRA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF495SGU bigWig fold change over control ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015CKI, ENCFF285LVE 225643272 ENCODE Processing Pipeline d83c9bf240ab090e9bb6c3141c2d7626 https://www.encodeproject.org/files/ENCFF495SGU/@@download/ENCFF495SGU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF775BPB bigWig signal p-value ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF148ZDV, ENCFF175NMQ 506757648 ENCODE Processing Pipeline aac12e7475dda912befd26d8de39f31f https://www.encodeproject.org/files/ENCFF775BPB/@@download/ENCFF775BPB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF214EIE bigWig signal p-value ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015CKI, ENCFF148ZDV, ENCFF175NMQ, ENCFF285LVE 791239225 ENCODE Processing Pipeline cf76eb27cdf73299fa84a881c405117f https://www.encodeproject.org/files/ENCFF214EIE/@@download/ENCFF214EIE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF666YDH bigWig signal p-value ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015CKI, ENCFF285LVE 418562919 ENCODE Processing Pipeline 7800b837db2c0494612d31cd900c4105 https://www.encodeproject.org/files/ENCFF666YDH/@@download/ENCFF666YDH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF782FEX bigWig fold change over control ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF148ZDV, ENCFF175NMQ 376312245 ENCODE Processing Pipeline aae1d7f1983d858dca45fb85c4462f69 https://www.encodeproject.org/files/ENCFF782FEX/@@download/ENCFF782FEX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF336BUE bigWig fold change over control ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015CKI, ENCFF148ZDV, ENCFF175NMQ, ENCFF285LVE 706341028 ENCODE Processing Pipeline c938fb9e903c9af5ba46603ac4997d21 https://www.encodeproject.org/files/ENCFF336BUE/@@download/ENCFF336BUE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF330HXJ bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF148ZDV, ENCFF175NMQ 3980805 ENCODE Processing Pipeline f4ac0094f316c258e35ea0626b6ecc18 https://www.encodeproject.org/files/ENCFF330HXJ/@@download/ENCFF330HXJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF328MZT bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015CKI, ENCFF148ZDV, ENCFF175NMQ, ENCFF285LVE 4996965 ENCODE Processing Pipeline 5720efefec9cfaabf476f1e33067e00c https://www.encodeproject.org/files/ENCFF328MZT/@@download/ENCFF328MZT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF358XRJ bigBed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF556VWG 6257224 ENCODE Processing Pipeline b5a0f1913aa6065d42c66ccce34f35ec https://www.encodeproject.org/files/ENCFF358XRJ/@@download/ENCFF358XRJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF658YNE bigBed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF330HXJ 10395803 ENCODE Processing Pipeline 210e39457341ffae66c9fa8c0b3187ea https://www.encodeproject.org/files/ENCFF658YNE/@@download/ENCFF658YNE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF377RHL bigBed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF328MZT 11400576 ENCODE Processing Pipeline b7a93b5f1e2ffbdfe30e46afa72c37a0 https://www.encodeproject.org/files/ENCFF377RHL/@@download/ENCFF377RHL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF173UJG bed narrowPeak conservative idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF328MZT, ENCFF330HXJ, ENCFF419RSJ, ENCFF556VWG 34750 ENCODE Processing Pipeline dce02a0eb1217bd475e54951b08e7833 https://www.encodeproject.org/files/ENCFF173UJG/@@download/ENCFF173UJG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF008HCL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF173UJG 108383 ENCODE Processing Pipeline 704aaa9270a4a43bc54c672fe36081b6 https://www.encodeproject.org/files/ENCFF008HCL/@@download/ENCFF008HCL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF569YXF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF943WRA 116526 ENCODE Processing Pipeline 10d8774ab5a6c4b6d076b69e1f8b97d6 https://www.encodeproject.org/files/ENCFF569YXF/@@download/ENCFF569YXF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF578QBU bigWig fold change over control ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF760RWX 225850624 ENCODE Processing Pipeline 6cec0a34f08d098025bf14da4239789c https://www.encodeproject.org/files/ENCFF578QBU/@@download/ENCFF578QBU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF333WDR bigWig signal p-value ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF760RWX 359072130 ENCODE Processing Pipeline 6725981ce4105b16041c9e5592950368 https://www.encodeproject.org/files/ENCFF333WDR/@@download/ENCFF333WDR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF175IWN bigWig signal p-value ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF382BNF, ENCFF616LIW 455825237 ENCODE Processing Pipeline f421a37ad3901835c18597be530159d0 https://www.encodeproject.org/files/ENCFF175IWN/@@download/ENCFF175IWN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF056KZU bigWig signal p-value ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF382BNF, ENCFF616LIW, ENCFF760RWX 834359105 ENCODE Processing Pipeline 454e0f2383210293ae8d4a04941f1087 https://www.encodeproject.org/files/ENCFF056KZU/@@download/ENCFF056KZU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF603VEB bigWig fold change over control ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF382BNF, ENCFF616LIW 377880251 ENCODE Processing Pipeline bf70c48dce5d99079ed646010b4dd2d0 https://www.encodeproject.org/files/ENCFF603VEB/@@download/ENCFF603VEB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF509QKU bigWig fold change over control ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF382BNF, ENCFF616LIW, ENCFF760RWX 705077792 ENCODE Processing Pipeline 55cfcdc0f68878f06499b65c30eb2920 https://www.encodeproject.org/files/ENCFF509QKU/@@download/ENCFF509QKU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF663PHV bigBed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF770YEM 11395733 ENCODE Processing Pipeline 4a5706083c936df99133fc35abf42e74 https://www.encodeproject.org/files/ENCFF663PHV/@@download/ENCFF663PHV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF734JFJ bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF760RWX 2881795 ENCODE Processing Pipeline 3c6fbf1d9b9bb64f1619cb591ddc3eac https://www.encodeproject.org/files/ENCFF734JFJ/@@download/ENCFF734JFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF866NPS bigBed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF839PVK 10463667 ENCODE Processing Pipeline 83f61bbee995558beacb325fcae714d5 https://www.encodeproject.org/files/ENCFF866NPS/@@download/ENCFF866NPS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF557KGA bed narrowPeak optimal idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF734JFJ, ENCFF770YEM, ENCFF839PVK 40188 ENCODE Processing Pipeline aeba6b6c81f68e85e8ad06ed88b5c5cc https://www.encodeproject.org/files/ENCFF557KGA/@@download/ENCFF557KGA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF839PVK bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF382BNF, ENCFF616LIW 4042486 ENCODE Processing Pipeline 8e92fc8e45b1744b7cdcf659febcb13c https://www.encodeproject.org/files/ENCFF839PVK/@@download/ENCFF839PVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF697VUK bed narrowPeak conservative idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF734JFJ, ENCFF770YEM, ENCFF839PVK 34245 ENCODE Processing Pipeline 78c3f52d4062b4592c003dec0cf9bf4c https://www.encodeproject.org/files/ENCFF697VUK/@@download/ENCFF697VUK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF943QYN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF697VUK 107021 ENCODE Processing Pipeline 1cb34f2c8de8a547e6e136de03a203ae https://www.encodeproject.org/files/ENCFF943QYN/@@download/ENCFF943QYN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF816TVY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF557KGA 114663 ENCODE Processing Pipeline 4acd3c0f527e02d8dd8073b74fd0c50e https://www.encodeproject.org/files/ENCFF816TVY/@@download/ENCFF816TVY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF770YEM bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF382BNF, ENCFF616LIW, ENCFF760RWX 4998713 ENCODE Processing Pipeline bbce61092c337df5d35241774518f82d https://www.encodeproject.org/files/ENCFF770YEM/@@download/ENCFF770YEM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF566FOG bigBed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF734JFJ 6252392 ENCODE Processing Pipeline 54279ba227c5ad7973f7f743e1a932fb https://www.encodeproject.org/files/ENCFF566FOG/@@download/ENCFF566FOG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF947CNN bam unfiltered alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 100 ENCFF287QDK, ENCFF592NQI, ENCFF807MUK 6708521559 ENCODE Processing Pipeline d720d7b9eb860bf0da69d29468261bc9 https://www.encodeproject.org/files/ENCFF947CNN/@@download/ENCFF947CNN.bam hg19 released borderline replicate concordance ENCFF021NKN bam unfiltered alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 100 ENCFF094RKI, ENCFF217CEA, ENCFF807MUK 6440427597 ENCODE Processing Pipeline 2f5998f36c7145c5993b409faab71e9a https://www.encodeproject.org/files/ENCFF021NKN/@@download/ENCFF021NKN.bam hg19 released borderline replicate concordance ENCFF287QDK fastq reads ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF592NQI 3133184593 Michael Snyder, Stanford 700058824e8e0d225a00edd3d7aba285 SRA:SRR5111239 https://www.encodeproject.org/files/ENCFF287QDK/@@download/ENCFF287QDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF592NQI fastq reads ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF287QDK 3055920650 Michael Snyder, Stanford 3f992554da2af0e53daf216c70f0e304 SRA:SRR5111239 https://www.encodeproject.org/files/ENCFF592NQI/@@download/ENCFF592NQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF094RKI fastq reads ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF217CEA 2992752852 Michael Snyder, Stanford f6da01034b9f2a9469aef1881a64a825 SRA:SRR5111240 https://www.encodeproject.org/files/ENCFF094RKI/@@download/ENCFF094RKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF217CEA fastq reads ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF094RKI 2917043125 Michael Snyder, Stanford 7015a7e752a5ec398bb15a89ad4641f5 SRA:SRR5111240 https://www.encodeproject.org/files/ENCFF217CEA/@@download/ENCFF217CEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF575KJF bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF094RKI, ENCFF217CEA, ENCFF807MUK 5602740895 ENCODE Processing Pipeline 8ee47ed2aa623432296265842d141985 https://www.encodeproject.org/files/ENCFF575KJF/@@download/ENCFF575KJF.bam hg19 released borderline replicate concordance ENCFF828KQX bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF287QDK, ENCFF592NQI, ENCFF807MUK 5854909207 ENCODE Processing Pipeline cb0ee1b778cbbf9df2331f5613284809 https://www.encodeproject.org/files/ENCFF828KQX/@@download/ENCFF828KQX.bam hg19 released borderline replicate concordance ENCFF447EUT bigWig signal p-value ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF828KQX 1386623538 ENCODE Processing Pipeline 35390f40a89400026e953dcf4520e049 https://www.encodeproject.org/files/ENCFF447EUT/@@download/ENCFF447EUT.bigWig hg19 released borderline replicate concordance ENCFF129XER bigWig signal p-value ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF575KJF 1000535165 ENCODE Processing Pipeline 3ba06e2a9a7604691fd3a4e19a541b2a https://www.encodeproject.org/files/ENCFF129XER/@@download/ENCFF129XER.bigWig hg19 released borderline replicate concordance ENCFF337YJD bigWig fold change over control ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF828KQX 1708987675 ENCODE Processing Pipeline b5f6da398ee44e8fcdc37502ca20069a https://www.encodeproject.org/files/ENCFF337YJD/@@download/ENCFF337YJD.bigWig hg19 released borderline replicate concordance ENCFF053OLK bigWig signal p-value ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF575KJF, ENCFF583FAG, ENCFF828KQX 2043343806 ENCODE Processing Pipeline df473b37a27c85e344dc66b8be13a692 https://www.encodeproject.org/files/ENCFF053OLK/@@download/ENCFF053OLK.bigWig hg19 released borderline replicate concordance ENCFF368MOY bigWig fold change over control ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF575KJF 1299017621 ENCODE Processing Pipeline 57973c92b55d095e737811bdc47a8d77 https://www.encodeproject.org/files/ENCFF368MOY/@@download/ENCFF368MOY.bigWig hg19 released borderline replicate concordance ENCFF505RVS bigBed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF026WLK 11108284 ENCODE Processing Pipeline 77374b25740bf96e35261708c05d6c5c https://www.encodeproject.org/files/ENCFF505RVS/@@download/ENCFF505RVS.bigBed hg19 released borderline replicate concordance ENCFF176YMC bigBed narrowPeak conservative idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF758RLH 135278 ENCODE Processing Pipeline 15f1924052824cad24c07fa3dec79635 https://www.encodeproject.org/files/ENCFF176YMC/@@download/ENCFF176YMC.bigBed hg19 released borderline replicate concordance ENCFF161DRO bigBed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF846AFR 10997374 ENCODE Processing Pipeline b17d2eec5b7b4acda10bf8a561571e4a https://www.encodeproject.org/files/ENCFF161DRO/@@download/ENCFF161DRO.bigBed hg19 released borderline replicate concordance ENCFF445ANP bed narrowPeak optimal idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF026WLK, ENCFF766QJJ, ENCFF846AFR 78411 ENCODE Processing Pipeline 667ac466c60ad43c4538ca0023c227e1 https://www.encodeproject.org/files/ENCFF445ANP/@@download/ENCFF445ANP.bed.gz hg19 released borderline replicate concordance ENCFF230KIW bigBed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF766QJJ 13123922 ENCODE Processing Pipeline 056a69a467b633340666e89b0eb3b912 https://www.encodeproject.org/files/ENCFF230KIW/@@download/ENCFF230KIW.bigBed hg19 released borderline replicate concordance ENCFF758RLH bed narrowPeak conservative idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF026WLK, ENCFF766QJJ, ENCFF846AFR 36727 ENCODE Processing Pipeline 956d01050ee866ac4484176e8be6f6a8 https://www.encodeproject.org/files/ENCFF758RLH/@@download/ENCFF758RLH.bed.gz hg19 released borderline replicate concordance ENCFF264RSV bigWig fold change over control ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF575KJF, ENCFF583FAG, ENCFF828KQX 2240377291 ENCODE Processing Pipeline c3962094596319f71a124c9034bf6fa1 https://www.encodeproject.org/files/ENCFF264RSV/@@download/ENCFF264RSV.bigWig hg19 released borderline replicate concordance ENCFF026WLK bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF828KQX 6916711 ENCODE Processing Pipeline 709ae80b1f54ed141c4a37fed334ebb7 https://www.encodeproject.org/files/ENCFF026WLK/@@download/ENCFF026WLK.bed.gz hg19 released borderline replicate concordance ENCFF766QJJ bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF575KJF, ENCFF583FAG, ENCFF828KQX 7221722 ENCODE Processing Pipeline 97f57795c994e0ab8eb19b417ef769a6 https://www.encodeproject.org/files/ENCFF766QJJ/@@download/ENCFF766QJJ.bed.gz hg19 released borderline replicate concordance ENCFF020JAD bigBed narrowPeak optimal idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF445ANP 212273 ENCODE Processing Pipeline 2644045ab86cf5380f511d61409458ae https://www.encodeproject.org/files/ENCFF020JAD/@@download/ENCFF020JAD.bigBed hg19 released borderline replicate concordance ENCFF846AFR bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF575KJF 6620782 ENCODE Processing Pipeline 822e5a55f7455ea033fbd10bee949f78 https://www.encodeproject.org/files/ENCFF846AFR/@@download/ENCFF846AFR.bed.gz hg19 released borderline replicate concordance ENCFF495FDI bam unfiltered alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 100 ENCFF094RKI, ENCFF217CEA, ENCFF643CGH 6453552755 ENCODE Processing Pipeline 1f102eb5dad89f8f452e4291ea9271c8 https://www.encodeproject.org/files/ENCFF495FDI/@@download/ENCFF495FDI.bam GRCh38 released borderline replicate concordance ENCFF413NHT bam unfiltered alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 100 ENCFF287QDK, ENCFF592NQI, ENCFF643CGH 6721311122 ENCODE Processing Pipeline e8209e7206c618baef19cc8208752f1b https://www.encodeproject.org/files/ENCFF413NHT/@@download/ENCFF413NHT.bam GRCh38 released borderline replicate concordance ENCFF106SIO bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 100 ENCFF287QDK, ENCFF592NQI, ENCFF643CGH 5863802681 ENCODE Processing Pipeline 6439b5a92d62fc3d5ce8fc9e753404a4 https://www.encodeproject.org/files/ENCFF106SIO/@@download/ENCFF106SIO.bam GRCh38 released borderline replicate concordance ENCFF552YQY bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 100 ENCFF094RKI, ENCFF217CEA, ENCFF643CGH 5612110536 ENCODE Processing Pipeline 8848f8df495b2b43012ccd9b9536412d https://www.encodeproject.org/files/ENCFF552YQY/@@download/ENCFF552YQY.bam GRCh38 released borderline replicate concordance ENCFF038IZF bigWig signal p-value ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF106SIO, ENCFF291AFY, ENCFF426RDP 1778028397 ENCODE Processing Pipeline f7f488f1ab97e7820b18b8ec8e159cc0 https://www.encodeproject.org/files/ENCFF038IZF/@@download/ENCFF038IZF.bigWig GRCh38 released borderline replicate concordance ENCFF071BWV bigWig signal p-value ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF552YQY 1138840472 ENCODE Processing Pipeline 084bb68d98d80218e36d4bd29040c3be https://www.encodeproject.org/files/ENCFF071BWV/@@download/ENCFF071BWV.bigWig GRCh38 released borderline replicate concordance ENCFF736DHP bigWig signal p-value ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF106SIO, ENCFF291AFY, ENCFF426RDP, ENCFF552YQY 1892482526 ENCODE Processing Pipeline 6a031bf5da738a2bb30a4018d7bd0fa3 https://www.encodeproject.org/files/ENCFF736DHP/@@download/ENCFF736DHP.bigWig GRCh38 released borderline replicate concordance ENCFF797EXV bigWig fold change over control ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF106SIO, ENCFF291AFY, ENCFF426RDP 1748996165 ENCODE Processing Pipeline ab44888a59e8d6c3a6247df84ef1162f https://www.encodeproject.org/files/ENCFF797EXV/@@download/ENCFF797EXV.bigWig GRCh38 released borderline replicate concordance ENCFF577FDI bigWig fold change over control ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF552YQY 1302971091 ENCODE Processing Pipeline 59c17ac7c839b871430311b2dc18d78f https://www.encodeproject.org/files/ENCFF577FDI/@@download/ENCFF577FDI.bigWig GRCh38 released borderline replicate concordance ENCFF752OQN bigWig fold change over control ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF106SIO, ENCFF291AFY, ENCFF426RDP, ENCFF552YQY 2284622923 ENCODE Processing Pipeline 33be0923d9fcb18c8db332740f64a4c8 https://www.encodeproject.org/files/ENCFF752OQN/@@download/ENCFF752OQN.bigWig GRCh38 released borderline replicate concordance ENCFF683LXI bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF552YQY 6498473 ENCODE Processing Pipeline 1e38f1e1012db309774932dbd5fad618 https://www.encodeproject.org/files/ENCFF683LXI/@@download/ENCFF683LXI.bed.gz GRCh38 released borderline replicate concordance ENCFF318YJA bigBed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF683LXI 11011021 ENCODE Processing Pipeline d53d7a73a776b17b60b65b76ed6b7ba2 https://www.encodeproject.org/files/ENCFF318YJA/@@download/ENCFF318YJA.bigBed GRCh38 released borderline replicate concordance ENCFF112TYX bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF106SIO, ENCFF291AFY, ENCFF426RDP 6827439 ENCODE Processing Pipeline 06a97a4b254908fb3975aadeeecf7d57 https://www.encodeproject.org/files/ENCFF112TYX/@@download/ENCFF112TYX.bed.gz GRCh38 released borderline replicate concordance ENCFF845ITN bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF106SIO, ENCFF291AFY, ENCFF426RDP, ENCFF552YQY 7205680 ENCODE Processing Pipeline 0e995b59f9cd3092847662c943e6886a https://www.encodeproject.org/files/ENCFF845ITN/@@download/ENCFF845ITN.bed.gz GRCh38 released borderline replicate concordance ENCFF706KCG bigBed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF845ITN 13147842 ENCODE Processing Pipeline cb8831b04d7e2c4cdbeca6e2f82dd865 https://www.encodeproject.org/files/ENCFF706KCG/@@download/ENCFF706KCG.bigBed GRCh38 released borderline replicate concordance ENCFF532AWE bed narrowPeak conservative idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF112TYX, ENCFF419RSJ, ENCFF683LXI, ENCFF845ITN 38845 ENCODE Processing Pipeline 276a009693d92424f01079b0392ce48f https://www.encodeproject.org/files/ENCFF532AWE/@@download/ENCFF532AWE.bed.gz GRCh38 released borderline replicate concordance ENCFF161SFU bed narrowPeak optimal idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF112TYX, ENCFF419RSJ, ENCFF683LXI, ENCFF845ITN 78795 ENCODE Processing Pipeline 0a5e1efa3f9600dda415f3e963ad1e33 https://www.encodeproject.org/files/ENCFF161SFU/@@download/ENCFF161SFU.bed.gz GRCh38 released borderline replicate concordance ENCFF292TQW bigBed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF112TYX 11123121 ENCODE Processing Pipeline 259afc16bc399111439e7a4f54bb76d7 https://www.encodeproject.org/files/ENCFF292TQW/@@download/ENCFF292TQW.bigBed GRCh38 released borderline replicate concordance ENCFF557VTY bigBed narrowPeak conservative idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF532AWE 141104 ENCODE Processing Pipeline e8efc3825eb058fe4bdd0e575c3ba22c https://www.encodeproject.org/files/ENCFF557VTY/@@download/ENCFF557VTY.bigBed GRCh38 released borderline replicate concordance ENCFF771JDX bigBed narrowPeak optimal idr thresholded peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF161SFU 215444 ENCODE Processing Pipeline 9ed971d4c03f5ababc1f50593e4cd95f https://www.encodeproject.org/files/ENCFF771JDX/@@download/ENCFF771JDX.bigBed GRCh38 released borderline replicate concordance ENCFF000RBE bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000RBN 715308457 Richard Myers, HAIB 42f346a7aade3757310a52150f01bb7d https://www.encodeproject.org/files/ENCFF000RBE/@@download/ENCFF000RBE.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000RBF bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000RBS 1673765421 Richard Myers, HAIB 80018e02dd4b48efaed966a6219572cb https://www.encodeproject.org/files/ENCFF000RBF/@@download/ENCFF000RBF.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000RBG bigBed broadPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UPZ 1086952 Richard Myers, HAIB 0962069007892836f6f884a82515a648 https://www.encodeproject.org/files/ENCFF000RBG/@@download/ENCFF000RBG.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000RBH bigBed broadPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UQA 1644626 Richard Myers, HAIB ebbf78e7917d370f7f0eaafca948c7bc https://www.encodeproject.org/files/ENCFF000RBH/@@download/ENCFF000RBH.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000RBJ bigWig raw signal ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 23055068 Richard Myers, HAIB 0901a841794e6df090a9d90e3ae5c8be https://www.encodeproject.org/files/ENCFF000RBJ/@@download/ENCFF000RBJ.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000RBL bigWig raw signal ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 71063295 Richard Myers, HAIB 0f9bd8b57ca090745a0198d026066c93 https://www.encodeproject.org/files/ENCFF000RBL/@@download/ENCFF000RBL.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000RBN fastq reads ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 551448102 Richard Myers, HAIB c212192e7770ef3c40ae91cebf5520f4 https://www.encodeproject.org/files/ENCFF000RBN/@@download/ENCFF000RBN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCB/ released low read length, low read depth biological replicates with identical biosample ENCFF000RBS fastq reads ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1680079004 Richard Myers, HAIB d492572cdd6f737ea9994e2dc2ba2573 https://www.encodeproject.org/files/ENCFF000RBS/@@download/ENCFF000RBS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCC/ released low read length, low read depth biological replicates with identical biosample ENCFF001UPZ bed broadPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 563234 Richard Myers, HAIB 395ee7b840a1e9c2eecd21206342af6a https://www.encodeproject.org/files/ENCFF001UPZ/@@download/ENCFF001UPZ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UQA bed broadPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 1052296 Richard Myers, HAIB 3948a8cd11552835f242687f0080807e https://www.encodeproject.org/files/ENCFF001UQA/@@download/ENCFF001UQA.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CNL bed narrowPeak optimal idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 570626 ENCODE Consortium Analysis Working Group 02ec64e92c3161603e7a04d225eae2a0 https://www.encodeproject.org/files/ENCFF002CNL/@@download/ENCFF002CNL.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF733KJJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNL 1197622 ENCODE Consortium bac13be5ad89581f0ede8fa1d6fcd87f https://www.encodeproject.org/files/ENCFF733KJJ/@@download/ENCFF733KJJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF349HCP bam unfiltered alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RBN, ENCFF643CGH 753062707 ENCODE Processing Pipeline ca3735e1ce044111e89789d820806af0 https://www.encodeproject.org/files/ENCFF349HCP/@@download/ENCFF349HCP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF100TXJ bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RBN, ENCFF643CGH 535555023 ENCODE Processing Pipeline 141fe35a8d73f4405db090f1133bf1a0 https://www.encodeproject.org/files/ENCFF100TXJ/@@download/ENCFF100TXJ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF324PAU bam unfiltered alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RBS, ENCFF643CGH 1817277660 ENCODE Processing Pipeline db333c81b94d38dcb6d24ea2cee11ed9 https://www.encodeproject.org/files/ENCFF324PAU/@@download/ENCFF324PAU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF521NVH bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RBS, ENCFF643CGH 1214649753 ENCODE Processing Pipeline a90a2898e51b63b2369e15fa7a751d0d https://www.encodeproject.org/files/ENCFF521NVH/@@download/ENCFF521NVH.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF993IJH bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RBN, ENCFF807MUK 535892345 ENCODE Processing Pipeline a5d82a8bc157aa10e19103ce4ca98926 https://www.encodeproject.org/files/ENCFF993IJH/@@download/ENCFF993IJH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF315KUF bam unfiltered alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RBN, ENCFF807MUK 751910671 ENCODE Processing Pipeline 8a165224a0f7083f94c50407e11cf66b https://www.encodeproject.org/files/ENCFF315KUF/@@download/ENCFF315KUF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF438AKY bam unfiltered alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RBS, ENCFF807MUK 1814269138 ENCODE Processing Pipeline 043cedbd02d081b502f536f66805840f https://www.encodeproject.org/files/ENCFF438AKY/@@download/ENCFF438AKY.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF611YAM bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RBS, ENCFF807MUK 1215420345 ENCODE Processing Pipeline a409f6a9251861e94206c11ae47d4c1f https://www.encodeproject.org/files/ENCFF611YAM/@@download/ENCFF611YAM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF426TCW bigWig signal p-value ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF100TXJ, ENCFF118ENS 486991920 ENCODE Processing Pipeline e8962ba41ee8daeee8dd73606ed50360 https://www.encodeproject.org/files/ENCFF426TCW/@@download/ENCFF426TCW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF870RJS bigWig signal p-value ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100TXJ, ENCFF118ENS, ENCFF521NVH, ENCFF798ORT 894822862 ENCODE Processing Pipeline 80268f92d21623427be6fcff63e7d3ca https://www.encodeproject.org/files/ENCFF870RJS/@@download/ENCFF870RJS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF339KEZ bigWig signal p-value ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF521NVH, ENCFF798ORT 906259349 ENCODE Processing Pipeline c3f64dc096ff9fd2a1d9e02c9294285d https://www.encodeproject.org/files/ENCFF339KEZ/@@download/ENCFF339KEZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF009YSQ bigWig fold change over control ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF100TXJ, ENCFF118ENS 270232964 ENCODE Processing Pipeline 50d836704d84bdb4562df6997d1d5a0c https://www.encodeproject.org/files/ENCFF009YSQ/@@download/ENCFF009YSQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF520ZUL bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF521NVH, ENCFF798ORT 6646997 ENCODE Processing Pipeline e484ab8053bf9ee5160dbb23652bc88b https://www.encodeproject.org/files/ENCFF520ZUL/@@download/ENCFF520ZUL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF818NEX bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100TXJ, ENCFF118ENS, ENCFF521NVH, ENCFF798ORT 6772190 ENCODE Processing Pipeline 9c58068e4d83e8722de438a25a7300f0 https://www.encodeproject.org/files/ENCFF818NEX/@@download/ENCFF818NEX.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF034KAQ bed narrowPeak conservative idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF201OOO, ENCFF419RSJ, ENCFF520ZUL, ENCFF818NEX 456802 ENCODE Processing Pipeline 76b7fc3a82680c5861941333e9a0c31b https://www.encodeproject.org/files/ENCFF034KAQ/@@download/ENCFF034KAQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF602NKU bigWig fold change over control ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100TXJ, ENCFF118ENS, ENCFF521NVH, ENCFF798ORT 853042812 ENCODE Processing Pipeline ee72be6779e55ca028cd89c612a50ab9 https://www.encodeproject.org/files/ENCFF602NKU/@@download/ENCFF602NKU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF713IPG bigWig fold change over control ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF521NVH, ENCFF798ORT 652522031 ENCODE Processing Pipeline 280671fd85d62cfa2a257af8710a45b8 https://www.encodeproject.org/files/ENCFF713IPG/@@download/ENCFF713IPG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF201OOO bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF100TXJ, ENCFF118ENS 6228546 ENCODE Processing Pipeline 81ab617465d6200887608eddc8ebb46b https://www.encodeproject.org/files/ENCFF201OOO/@@download/ENCFF201OOO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF856TJX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF034KAQ 994032 ENCODE Processing Pipeline 845e4f866d3056c2857dcfa0ecb774f1 https://www.encodeproject.org/files/ENCFF856TJX/@@download/ENCFF856TJX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF006ZHG bigBed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF520ZUL 12323393 ENCODE Processing Pipeline b3a0277c67c15ce9ebc418f3b5eb3404 https://www.encodeproject.org/files/ENCFF006ZHG/@@download/ENCFF006ZHG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF122DSG bigBed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF201OOO 12219930 ENCODE Processing Pipeline 61d20a40d885568748a2151c17dd27b2 https://www.encodeproject.org/files/ENCFF122DSG/@@download/ENCFF122DSG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF617KIQ bigBed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF818NEX 12248887 ENCODE Processing Pipeline 959eaa147b149017c986fdfca7058c56 https://www.encodeproject.org/files/ENCFF617KIQ/@@download/ENCFF617KIQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF656VCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF501PQI 1245768 ENCODE Processing Pipeline 93cb3d847775a3eef626b721c7ec3c04 https://www.encodeproject.org/files/ENCFF656VCS/@@download/ENCFF656VCS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF501PQI bed narrowPeak optimal idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF201OOO, ENCFF419RSJ, ENCFF520ZUL, ENCFF818NEX 618788 ENCODE Processing Pipeline d90e984aa456d2e745c596ad349c609d https://www.encodeproject.org/files/ENCFF501PQI/@@download/ENCFF501PQI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF797XXH bigWig signal p-value ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF993IJH 407871886 ENCODE Processing Pipeline 80b052a89e24cbff48d3b6bb53a55561 https://www.encodeproject.org/files/ENCFF797XXH/@@download/ENCFF797XXH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF167CJH bigWig fold change over control ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF993IJH 271382172 ENCODE Processing Pipeline af050f2fb3f111ea8f98c299c7839d64 https://www.encodeproject.org/files/ENCFF167CJH/@@download/ENCFF167CJH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF941QWH bigWig signal p-value ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE 878571535 ENCODE Processing Pipeline e81b66cebab03a3191c27b5dc24451b7 https://www.encodeproject.org/files/ENCFF941QWH/@@download/ENCFF941QWH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF521MMQ bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE, ENCFF993IJH 6846875 ENCODE Processing Pipeline 1b598364ba17575c3cfbfa419aabb916 https://www.encodeproject.org/files/ENCFF521MMQ/@@download/ENCFF521MMQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF230DMM bed narrowPeak optimal idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF521MMQ, ENCFF784BHQ, ENCFF927MZZ 624914 ENCODE Processing Pipeline 397c2bbc368f84d16938fb2e507d69fe https://www.encodeproject.org/files/ENCFF230DMM/@@download/ENCFF230DMM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF784BHQ bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF993IJH 6213589 ENCODE Processing Pipeline fa4df9b4f771ab42cb0fa07d0fcca532 https://www.encodeproject.org/files/ENCFF784BHQ/@@download/ENCFF784BHQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF503NAI bigBed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF784BHQ 12194221 ENCODE Processing Pipeline 7b4aa3466cd672cfe5b839aed8c3cc32 https://www.encodeproject.org/files/ENCFF503NAI/@@download/ENCFF503NAI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF886QMR bigBed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF927MZZ 12372664 ENCODE Processing Pipeline 997e58789e2fc4244c04f6f25e21378f https://www.encodeproject.org/files/ENCFF886QMR/@@download/ENCFF886QMR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF509TGF bigBed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF521MMQ 12345772 ENCODE Processing Pipeline d73f98b0625d030dc0972f723d7b8f5a https://www.encodeproject.org/files/ENCFF509TGF/@@download/ENCFF509TGF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF398RJY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF901VZE 990370 ENCODE Processing Pipeline b933738c01ccacd63699b6ac15e3c7eb https://www.encodeproject.org/files/ENCFF398RJY/@@download/ENCFF398RJY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF091UNG bigWig fold change over control ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE 658305198 ENCODE Processing Pipeline be3cea71deb1c4ba8a410216c9a186b3 https://www.encodeproject.org/files/ENCFF091UNG/@@download/ENCFF091UNG.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF576HVS bigWig fold change over control ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE, ENCFF993IJH 846220076 ENCODE Processing Pipeline 6adac3a75dd84ab52431990f76131b62 https://www.encodeproject.org/files/ENCFF576HVS/@@download/ENCFF576HVS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF143OIT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF230DMM 1255574 ENCODE Processing Pipeline 671d091344d498f09bbd4ae1752c662a https://www.encodeproject.org/files/ENCFF143OIT/@@download/ENCFF143OIT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF922VQZ bigWig signal p-value ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE, ENCFF993IJH 907859765 ENCODE Processing Pipeline 9041da00b6fe7865f141b3004988e7b6 https://www.encodeproject.org/files/ENCFF922VQZ/@@download/ENCFF922VQZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF927MZZ bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE 6693836 ENCODE Processing Pipeline bec9011d554003cd3d853fa696ac5c5c https://www.encodeproject.org/files/ENCFF927MZZ/@@download/ENCFF927MZZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF901VZE bed narrowPeak conservative idr thresholded peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF521MMQ, ENCFF784BHQ, ENCFF927MZZ 454716 ENCODE Processing Pipeline 8cccc6d8e376f1a8c2a21f4b0260f617 https://www.encodeproject.org/files/ENCFF901VZE/@@download/ENCFF901VZE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF207YQO fastq reads ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 1 100 paired-ended 2 ENCFF493EZE 4883811317 Michael Snyder, Stanford 756735e4f85cd27d151ef21d39fb47ce SRA:SRR5112321 https://www.encodeproject.org/files/ENCFF207YQO/@@download/ENCFF207YQO.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, moderate library complexity ENCFF031QKW fastq reads ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 1 100 paired-ended 1 ENCFF473RLY 3461784577 Michael Snyder, Stanford 3b3bd06148daf5cd0f377827467e790c SRA:SRR5112322 https://www.encodeproject.org/files/ENCFF031QKW/@@download/ENCFF031QKW.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, moderate library complexity ENCFF473RLY fastq reads ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 1 100 paired-ended 2 ENCFF031QKW 3867881851 Michael Snyder, Stanford 8091e30c9b51c158810665ac2319bb46 SRA:SRR5112322 https://www.encodeproject.org/files/ENCFF473RLY/@@download/ENCFF473RLY.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, moderate library complexity ENCFF493EZE fastq reads ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 1 100 paired-ended 1 ENCFF207YQO 4744630644 Michael Snyder, Stanford ce0534254079c60aff128718d001a7f3 SRA:SRR5112321 https://www.encodeproject.org/files/ENCFF493EZE/@@download/ENCFF493EZE.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, moderate library complexity ENCFF626JTU bam unfiltered alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 100 ENCFF031QKW, ENCFF473RLY, ENCFF643CGH 6467383307 ENCODE Processing Pipeline 3c8462d343ce7855091ed76d3ffbb663 https://www.encodeproject.org/files/ENCFF626JTU/@@download/ENCFF626JTU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF332PWQ bam unfiltered alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 100 ENCFF031QKW, ENCFF473RLY, ENCFF807MUK 6466107658 ENCODE Processing Pipeline 397dd209822f0fc91d2bedd6cc40caf9 https://www.encodeproject.org/files/ENCFF332PWQ/@@download/ENCFF332PWQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF259IST bam unfiltered alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 100 ENCFF207YQO, ENCFF493EZE, ENCFF643CGH 8328614823 ENCODE Processing Pipeline 481ac973f919db135a2e21f0be5b8ba6 https://www.encodeproject.org/files/ENCFF259IST/@@download/ENCFF259IST.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF831TYG bam unfiltered alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 100 ENCFF207YQO, ENCFF493EZE, ENCFF807MUK 8330123740 ENCODE Processing Pipeline 76448e167e80f4a28c1f61d6c9d31478 https://www.encodeproject.org/files/ENCFF831TYG/@@download/ENCFF831TYG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF837ZOY bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 100 ENCFF031QKW, ENCFF473RLY, ENCFF643CGH 4276094016 ENCODE Processing Pipeline 09672b856805eab1fddb9f5baddc2ed2 https://www.encodeproject.org/files/ENCFF837ZOY/@@download/ENCFF837ZOY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF368KYI bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 100 ENCFF031QKW, ENCFF473RLY, ENCFF807MUK 4271856692 ENCODE Processing Pipeline cbc301020f1ec24a5f54644b636f591d https://www.encodeproject.org/files/ENCFF368KYI/@@download/ENCFF368KYI.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF183MSQ bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 100 ENCFF207YQO, ENCFF493EZE, ENCFF643CGH 4749755609 ENCODE Processing Pipeline c6a04c0416fcf79a25922e0b7b2bfa1b https://www.encodeproject.org/files/ENCFF183MSQ/@@download/ENCFF183MSQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF090JBA bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 100 ENCFF207YQO, ENCFF493EZE, ENCFF807MUK 4745356928 ENCODE Processing Pipeline 821621910cf8cffcec17e4bd3078ca67 https://www.encodeproject.org/files/ENCFF090JBA/@@download/ENCFF090JBA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF487AUU bigWig signal p-value ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF090JBA, ENCFF160VXC 1092945802 ENCODE Processing Pipeline a3b5ee33b6c349618d6622c4ba2b8047 https://www.encodeproject.org/files/ENCFF487AUU/@@download/ENCFF487AUU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF566BZU bigWig signal p-value ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF368KYI, ENCFF834TUP 1332901853 ENCODE Processing Pipeline 776d9bf4573d0f5a11e06f4173c8d2aa https://www.encodeproject.org/files/ENCFF566BZU/@@download/ENCFF566BZU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF583AGI bigWig signal p-value ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF090JBA, ENCFF160VXC, ENCFF368KYI, ENCFF834TUP 1727375448 ENCODE Processing Pipeline fc86c6df8ba208b50ef97bc2dd7df706 https://www.encodeproject.org/files/ENCFF583AGI/@@download/ENCFF583AGI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF829YQI bigWig fold change over control ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF090JBA, ENCFF160VXC 1497537252 ENCODE Processing Pipeline 17abc3b3b32cf5d94364bf90b85e043e https://www.encodeproject.org/files/ENCFF829YQI/@@download/ENCFF829YQI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF848HPN bigWig fold change over control ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF368KYI, ENCFF834TUP 1416485257 ENCODE Processing Pipeline 35e109cb473949311a7f53020edc182e https://www.encodeproject.org/files/ENCFF848HPN/@@download/ENCFF848HPN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF156KTG bigWig fold change over control ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF090JBA, ENCFF160VXC, ENCFF368KYI, ENCFF834TUP 2402920445 ENCODE Processing Pipeline 0055723b23ac2d02a2da5aece5520f9d https://www.encodeproject.org/files/ENCFF156KTG/@@download/ENCFF156KTG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF786DOF bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF090JBA, ENCFF160VXC 6967101 ENCODE Processing Pipeline 2ec38696cf24579860c517913f038387 https://www.encodeproject.org/files/ENCFF786DOF/@@download/ENCFF786DOF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF733TAS bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF368KYI, ENCFF834TUP 7027912 ENCODE Processing Pipeline 0de62bf87fc85a4410f6e86e79d8876a https://www.encodeproject.org/files/ENCFF733TAS/@@download/ENCFF733TAS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF163OZR bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF090JBA, ENCFF160VXC, ENCFF368KYI, ENCFF834TUP 7224661 ENCODE Processing Pipeline a9fccfe8c2260b5662877651118d1aa9 https://www.encodeproject.org/files/ENCFF163OZR/@@download/ENCFF163OZR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF635JCW bigBed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF786DOF 13119652 ENCODE Processing Pipeline b6dfeed00588c34404a2597df0f4c434 https://www.encodeproject.org/files/ENCFF635JCW/@@download/ENCFF635JCW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF246RYT bigBed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF733TAS 13415790 ENCODE Processing Pipeline fce384c90c967987213cbb9ba2980c33 https://www.encodeproject.org/files/ENCFF246RYT/@@download/ENCFF246RYT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF611GXL bed narrowPeak conservative idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF001TDO, ENCFF163OZR, ENCFF733TAS, ENCFF786DOF 287523 ENCODE Processing Pipeline 22441bf22be6ca6c34b085ed0459afb1 https://www.encodeproject.org/files/ENCFF611GXL/@@download/ENCFF611GXL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF889OKT bigBed narrowPeak conservative idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF611GXL 587629 ENCODE Processing Pipeline 8439b1340e1091d5870fa540b89e2fc3 https://www.encodeproject.org/files/ENCFF889OKT/@@download/ENCFF889OKT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF586NMI bigBed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF163OZR 13357074 ENCODE Processing Pipeline f56d7a890919e15b86ac2bf65edea0b6 https://www.encodeproject.org/files/ENCFF586NMI/@@download/ENCFF586NMI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF010UHD bed narrowPeak optimal idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF001TDO, ENCFF163OZR, ENCFF733TAS, ENCFF786DOF 347670 ENCODE Processing Pipeline 807a6c046733e6afc5f75fcff16832d9 https://www.encodeproject.org/files/ENCFF010UHD/@@download/ENCFF010UHD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF879XKB bigBed narrowPeak optimal idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF010UHD 673307 ENCODE Processing Pipeline c8e90639444e45e005c116a7d0827f98 https://www.encodeproject.org/files/ENCFF879XKB/@@download/ENCFF879XKB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF563GQI bigWig signal p-value ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF183MSQ, ENCFF790TAN 1438920886 ENCODE Processing Pipeline 263e1d5bdacad2d79384c8d5c6c9a446 https://www.encodeproject.org/files/ENCFF563GQI/@@download/ENCFF563GQI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF743UIZ bigWig signal p-value ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF712WXB, ENCFF837ZOY 1116850749 ENCODE Processing Pipeline 2fdbe19ff464b873c3cdef5b5d2fc0bf https://www.encodeproject.org/files/ENCFF743UIZ/@@download/ENCFF743UIZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF317LLL bigWig signal p-value ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF183MSQ, ENCFF712WXB, ENCFF790TAN, ENCFF837ZOY 2022954003 ENCODE Processing Pipeline a1bb53af8fce1cb41d58575fcaac2f1b https://www.encodeproject.org/files/ENCFF317LLL/@@download/ENCFF317LLL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF410AVV bigWig fold change over control ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF183MSQ, ENCFF790TAN 1482736499 ENCODE Processing Pipeline 4a4a723e5de39915f33446fde14ec9ba https://www.encodeproject.org/files/ENCFF410AVV/@@download/ENCFF410AVV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF414QES bigWig fold change over control ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF712WXB, ENCFF837ZOY 1419720240 ENCODE Processing Pipeline b5eddc667ebfa60f1a3141799e8494ce https://www.encodeproject.org/files/ENCFF414QES/@@download/ENCFF414QES.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF825MVK bigWig fold change over control ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF183MSQ, ENCFF712WXB, ENCFF790TAN, ENCFF837ZOY 2391879486 ENCODE Processing Pipeline 2568a2becc259e06d42fde594e2b183d https://www.encodeproject.org/files/ENCFF825MVK/@@download/ENCFF825MVK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF723NUH bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF712WXB, ENCFF837ZOY 6927636 ENCODE Processing Pipeline 50b72f86c2ddd1a3f5b23e880571f659 https://www.encodeproject.org/files/ENCFF723NUH/@@download/ENCFF723NUH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF895ELG bigBed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF858GQK 13140425 ENCODE Processing Pipeline 9b40d6fe0cea1f1c26e207c7b292f51e https://www.encodeproject.org/files/ENCFF895ELG/@@download/ENCFF895ELG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF858GQK bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 ENCFF183MSQ, ENCFF790TAN 6899844 ENCODE Processing Pipeline 1031ecab66d9941b0d15fd56a681f7a2 https://www.encodeproject.org/files/ENCFF858GQK/@@download/ENCFF858GQK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF588ASX bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF183MSQ, ENCFF712WXB, ENCFF790TAN, ENCFF837ZOY 7224266 ENCODE Processing Pipeline ffa4df8f56c55c46bb63e637cd24d587 https://www.encodeproject.org/files/ENCFF588ASX/@@download/ENCFF588ASX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF246MSN bigBed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 ENCFF723NUH 13403071 ENCODE Processing Pipeline 85c95e273fea526a6f6dc5e0530bb705 https://www.encodeproject.org/files/ENCFF246MSN/@@download/ENCFF246MSN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF667ANE bed narrowPeak conservative idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF419RSJ, ENCFF588ASX, ENCFF723NUH, ENCFF858GQK 289670 ENCODE Processing Pipeline 563feef21f0c506f338e36723cef44e2 https://www.encodeproject.org/files/ENCFF667ANE/@@download/ENCFF667ANE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF193PVX bed narrowPeak optimal idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF419RSJ, ENCFF588ASX, ENCFF723NUH, ENCFF858GQK 351650 ENCODE Processing Pipeline 2a7a796c41def255c0a3425c32550198 https://www.encodeproject.org/files/ENCFF193PVX/@@download/ENCFF193PVX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF093IOY bigBed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF588ASX 13373117 ENCODE Processing Pipeline a093b47acc0dd20bc10477267ef9ea4d https://www.encodeproject.org/files/ENCFF093IOY/@@download/ENCFF093IOY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF976LFS bigBed narrowPeak optimal idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF193PVX 682224 ENCODE Processing Pipeline 462a213be30fb46dcb180f68dab5847c https://www.encodeproject.org/files/ENCFF976LFS/@@download/ENCFF976LFS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF103JDW bigBed narrowPeak conservative idr thresholded peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3, 4 ENCFF667ANE 594066 ENCODE Processing Pipeline 8f36c2bbd220df1b19ead7d23632b4ba https://www.encodeproject.org/files/ENCFF103JDW/@@download/ENCFF103JDW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF841LNZ fastq reads ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF349SST 2418565560 Michael Snyder, Stanford aa6bcdff0d0d6b9cfd488adef911248c SRA:SRR5112251 https://www.encodeproject.org/files/ENCFF841LNZ/@@download/ENCFF841LNZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF204USM fastq reads ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF647EYX 2748245162 Michael Snyder, Stanford 86bd2fa2ab768be45bfa8b2b06138384 SRA:SRR5112252 https://www.encodeproject.org/files/ENCFF204USM/@@download/ENCFF204USM.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF349SST fastq reads ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF841LNZ 2449392294 Michael Snyder, Stanford 2a80022d5f8347a2aa59fd04af47758b SRA:SRR5112251 https://www.encodeproject.org/files/ENCFF349SST/@@download/ENCFF349SST.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF647EYX fastq reads ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF204USM 2759605046 Michael Snyder, Stanford 81410483d4f6a7dd017a3817630a51f7 SRA:SRR5112252 https://www.encodeproject.org/files/ENCFF647EYX/@@download/ENCFF647EYX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF772VMV bam unfiltered alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF349SST, ENCFF643CGH, ENCFF841LNZ 5396896841 ENCODE Processing Pipeline 6c8d776706804fe3548ee007284bd652 https://www.encodeproject.org/files/ENCFF772VMV/@@download/ENCFF772VMV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF727YUE bam unfiltered alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204USM, ENCFF647EYX, ENCFF807MUK 6055083791 ENCODE Processing Pipeline 6e21ee37488f6914636a3a3b91cd7dbf https://www.encodeproject.org/files/ENCFF727YUE/@@download/ENCFF727YUE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF032BJD bam unfiltered alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF349SST, ENCFF807MUK, ENCFF841LNZ 5393024363 ENCODE Processing Pipeline 1110fd622e963e08383304b7f92f93cf https://www.encodeproject.org/files/ENCFF032BJD/@@download/ENCFF032BJD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF758YBD bam unfiltered alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204USM, ENCFF643CGH, ENCFF647EYX 6060833964 ENCODE Processing Pipeline ade5be1d8b479fff878b3d72e53a2207 https://www.encodeproject.org/files/ENCFF758YBD/@@download/ENCFF758YBD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF428TXD bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF349SST, ENCFF643CGH, ENCFF841LNZ 4528270720 ENCODE Processing Pipeline bad70e86b211cd2931ac2ab74c35c426 https://www.encodeproject.org/files/ENCFF428TXD/@@download/ENCFF428TXD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF297DWV bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF349SST, ENCFF807MUK, ENCFF841LNZ 4526276930 ENCODE Processing Pipeline e86073529586390f82b838185b62a4ad https://www.encodeproject.org/files/ENCFF297DWV/@@download/ENCFF297DWV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF102PTL bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204USM, ENCFF647EYX, ENCFF807MUK 5233173104 ENCODE Processing Pipeline 61800249dc469619816d72841f591af7 https://www.encodeproject.org/files/ENCFF102PTL/@@download/ENCFF102PTL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF262PFD bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204USM, ENCFF643CGH, ENCFF647EYX 5236053502 ENCODE Processing Pipeline 31d963432b190bd0441d2397fd9c872a https://www.encodeproject.org/files/ENCFF262PFD/@@download/ENCFF262PFD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF613HKY bigWig signal p-value ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297DWV 1230450603 ENCODE Processing Pipeline 403068a94eb6efbfe36f5d7cfb2177cb https://www.encodeproject.org/files/ENCFF613HKY/@@download/ENCFF613HKY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF179TDD bigWig signal p-value ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF102PTL 1267361212 ENCODE Processing Pipeline 5bba7df0838f4145a21b1ea29030a0d3 https://www.encodeproject.org/files/ENCFF179TDD/@@download/ENCFF179TDD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF796CRZ bigWig signal p-value ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF102PTL, ENCFF297DWV 2014569646 ENCODE Processing Pipeline 2c6cd729ff3420df7176c8cb12881ab8 https://www.encodeproject.org/files/ENCFF796CRZ/@@download/ENCFF796CRZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF780MXL bigWig fold change over control ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297DWV 1394052678 ENCODE Processing Pipeline 8f09bc19e49c4cceed331b5c5163abfe https://www.encodeproject.org/files/ENCFF780MXL/@@download/ENCFF780MXL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF972IFM bigWig fold change over control ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF102PTL 1511960883 ENCODE Processing Pipeline ed711b7c54b0de81b476a7d25c39b95e https://www.encodeproject.org/files/ENCFF972IFM/@@download/ENCFF972IFM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF498WPI bigWig fold change over control ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF102PTL, ENCFF297DWV 2039943068 ENCODE Processing Pipeline 22cc4d10a3146679f977804fdbf96e1d https://www.encodeproject.org/files/ENCFF498WPI/@@download/ENCFF498WPI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF346YEJ bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297DWV 6998016 ENCODE Processing Pipeline a7134f578bab71923baf0e1490ef5a2f https://www.encodeproject.org/files/ENCFF346YEJ/@@download/ENCFF346YEJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF517JSD bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF102PTL 7031478 ENCODE Processing Pipeline 4c5fe2fff4d7a4ee261952183f74b012 https://www.encodeproject.org/files/ENCFF517JSD/@@download/ENCFF517JSD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF948YXD bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF102PTL, ENCFF297DWV 7250330 ENCODE Processing Pipeline aca7f9ec047a818b4804da6a3e2a00c7 https://www.encodeproject.org/files/ENCFF948YXD/@@download/ENCFF948YXD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF066MMK bigBed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF346YEJ 13221258 ENCODE Processing Pipeline b9628182c20c8bcf17877eaaf789e0f9 https://www.encodeproject.org/files/ENCFF066MMK/@@download/ENCFF066MMK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF191MVK bigBed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF517JSD 13229838 ENCODE Processing Pipeline 83e3830b6cba7a5c4f88756e1c0044f0 https://www.encodeproject.org/files/ENCFF191MVK/@@download/ENCFF191MVK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF330VMK bigBed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF948YXD 13025598 ENCODE Processing Pipeline 95f79c556171e1545515a47c4e367398 https://www.encodeproject.org/files/ENCFF330VMK/@@download/ENCFF330VMK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF335ZMQ bed narrowPeak conservative idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF346YEJ, ENCFF517JSD, ENCFF948YXD 217965 ENCODE Processing Pipeline 231a10721f85eebe919330e2442987e6 https://www.encodeproject.org/files/ENCFF335ZMQ/@@download/ENCFF335ZMQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF320GGD bigBed narrowPeak conservative idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF335ZMQ 491537 ENCODE Processing Pipeline 2621feda3a634e3911e29505bb7eb694 https://www.encodeproject.org/files/ENCFF320GGD/@@download/ENCFF320GGD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF677ZDS bed narrowPeak optimal idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF346YEJ, ENCFF517JSD, ENCFF948YXD 255849 ENCODE Processing Pipeline 9ae3eb454ba08554fcfab1d654509042 https://www.encodeproject.org/files/ENCFF677ZDS/@@download/ENCFF677ZDS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF448MOA bigBed narrowPeak optimal idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF677ZDS 554367 ENCODE Processing Pipeline 63adfe3022267e9e6157d0c0aaa0ea18 https://www.encodeproject.org/files/ENCFF448MOA/@@download/ENCFF448MOA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF904VKX bigWig signal p-value ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF428TXD 1166619828 ENCODE Processing Pipeline 55b09716f2e3fe4c35b03646f2d0a7d1 https://www.encodeproject.org/files/ENCFF904VKX/@@download/ENCFF904VKX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF823TBW bigWig signal p-value ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262PFD 1492326573 ENCODE Processing Pipeline 138338303d5bb5760bebec69291b8144 https://www.encodeproject.org/files/ENCFF823TBW/@@download/ENCFF823TBW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF203LFS bigWig signal p-value ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF262PFD, ENCFF428TXD 1979986610 ENCODE Processing Pipeline d5f4243177b6ed3aab5b78604dba22fa https://www.encodeproject.org/files/ENCFF203LFS/@@download/ENCFF203LFS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF099PBR bigWig fold change over control ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF428TXD 1393217225 ENCODE Processing Pipeline e366a78f75b1f60511bce2f097d32d8e https://www.encodeproject.org/files/ENCFF099PBR/@@download/ENCFF099PBR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF417GJQ bigWig fold change over control ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262PFD 1528414094 ENCODE Processing Pipeline 52f495853e75b6e7527a981210c4ec2a https://www.encodeproject.org/files/ENCFF417GJQ/@@download/ENCFF417GJQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF971UQV bigWig fold change over control ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF262PFD, ENCFF428TXD 2007041528 ENCODE Processing Pipeline accb503ecdb1a3d3beee8062d76eae8c https://www.encodeproject.org/files/ENCFF971UQV/@@download/ENCFF971UQV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF885ALW bigBed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF824IOJ 13244466 ENCODE Processing Pipeline 8dfe5b452823cfbab4e56fd1e31b9a1a https://www.encodeproject.org/files/ENCFF885ALW/@@download/ENCFF885ALW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF395GUF bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF428TXD 6921567 ENCODE Processing Pipeline 06aa147832470692db9b79cc8529cf11 https://www.encodeproject.org/files/ENCFF395GUF/@@download/ENCFF395GUF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF960DHU bigBed narrowPeak conservative idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF515OHN 502150 ENCODE Processing Pipeline ffeb96f96644048c07865c80fd20817c https://www.encodeproject.org/files/ENCFF960DHU/@@download/ENCFF960DHU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF515OHN bed narrowPeak conservative idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF395GUF, ENCFF419RSJ, ENCFF431DSW, ENCFF824IOJ 225522 ENCODE Processing Pipeline 386ecb4083d7900d8a21ffac27215653 https://www.encodeproject.org/files/ENCFF515OHN/@@download/ENCFF515OHN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF462OZQ bigBed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF395GUF 13224716 ENCODE Processing Pipeline 183d2c6f3c8d62d15c923518bdd00432 https://www.encodeproject.org/files/ENCFF462OZQ/@@download/ENCFF462OZQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF662TMD bed narrowPeak optimal idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF395GUF, ENCFF419RSJ, ENCFF431DSW, ENCFF824IOJ 261863 ENCODE Processing Pipeline 55c19646f6af380772405aed076a46ea https://www.encodeproject.org/files/ENCFF662TMD/@@download/ENCFF662TMD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF331OLJ bigBed narrowPeak optimal idr thresholded peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF662TMD 564913 ENCODE Processing Pipeline e3b49b087e86fdd1d8508a743d7cafbe https://www.encodeproject.org/files/ENCFF331OLJ/@@download/ENCFF331OLJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF824IOJ bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262PFD 6963992 ENCODE Processing Pipeline c1fe17f042eb94e158d252376cccae0d https://www.encodeproject.org/files/ENCFF824IOJ/@@download/ENCFF824IOJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF431DSW bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF262PFD, ENCFF428TXD 7254167 ENCODE Processing Pipeline be7ce1f7c2d9b52ff284574f4a26c597 https://www.encodeproject.org/files/ENCFF431DSW/@@download/ENCFF431DSW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF270UEW bigBed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF431DSW 13048926 ENCODE Processing Pipeline 0a25b5308f4fa772a8ff49f9ff88cf8a https://www.encodeproject.org/files/ENCFF270UEW/@@download/ENCFF270UEW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF417XOC bam unfiltered alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 100 ENCFF349RWV, ENCFF463BOF, ENCFF807MUK 4759902127 ENCODE Processing Pipeline a13d6298cb3e8dfd8fed3e4838288fc2 https://www.encodeproject.org/files/ENCFF417XOC/@@download/ENCFF417XOC.bam hg19 released ENCFF806FHV bam unfiltered alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 100 ENCFF338EIM, ENCFF807MUK, ENCFF873VGP 5272422815 ENCODE Processing Pipeline da1ff8eb928c1b9286ff7b9931df1a8e https://www.encodeproject.org/files/ENCFF806FHV/@@download/ENCFF806FHV.bam hg19 released ENCFF338EIM fastq reads ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF873VGP 2358396575 Michael Snyder, Stanford 02b1857021d5d2b0ecdfa669c373737b SRA:SRR5111347 https://www.encodeproject.org/files/ENCFF338EIM/@@download/ENCFF338EIM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF873VGP fastq reads ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF338EIM 2430726349 Michael Snyder, Stanford 316dc651adf49fa350d435939a801f07 SRA:SRR5111347 https://www.encodeproject.org/files/ENCFF873VGP/@@download/ENCFF873VGP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF463BOF fastq reads ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF349RWV 2122083201 Michael Snyder, Stanford f2ea8a724ccaf6bf7145d13bc74c91c5 SRA:SRR5111348 https://www.encodeproject.org/files/ENCFF463BOF/@@download/ENCFF463BOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF349RWV fastq reads ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF463BOF 2184115581 Michael Snyder, Stanford f7ec892868d847813d4246e52895c19f SRA:SRR5111348 https://www.encodeproject.org/files/ENCFF349RWV/@@download/ENCFF349RWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF766FGH bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 100 ENCFF349RWV, ENCFF463BOF, ENCFF807MUK 4019617462 ENCODE Processing Pipeline e535f3150ce86097115a0771708ffff9 https://www.encodeproject.org/files/ENCFF766FGH/@@download/ENCFF766FGH.bam hg19 released ENCFF207NEA bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 100 ENCFF338EIM, ENCFF807MUK, ENCFF873VGP 4440683006 ENCODE Processing Pipeline b24933702356bb785de2ffd9711842e3 https://www.encodeproject.org/files/ENCFF207NEA/@@download/ENCFF207NEA.bam hg19 released ENCFF072ERO bigWig signal p-value ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF766FGH, ENCFF999EQI 856878787 ENCODE Processing Pipeline c93203655ff4614277894f6db02a89cf https://www.encodeproject.org/files/ENCFF072ERO/@@download/ENCFF072ERO.bigWig hg19 released ENCFF586EIF bigWig signal p-value ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF207NEA, ENCFF449NNE, ENCFF766FGH, ENCFF999EQI 1826976720 ENCODE Processing Pipeline b27fb650a835898a34cf33a7861827cd https://www.encodeproject.org/files/ENCFF586EIF/@@download/ENCFF586EIF.bigWig hg19 released ENCFF402JIU bigWig fold change over control ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF766FGH, ENCFF999EQI 1027761545 ENCODE Processing Pipeline 03b05933326e8a1017b5efd091f15ced https://www.encodeproject.org/files/ENCFF402JIU/@@download/ENCFF402JIU.bigWig hg19 released ENCFF629MWM bigWig fold change over control ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF207NEA, ENCFF449NNE, ENCFF766FGH, ENCFF999EQI 2040876281 ENCODE Processing Pipeline 173f0320f1c31649a604658f4fd3224b https://www.encodeproject.org/files/ENCFF629MWM/@@download/ENCFF629MWM.bigWig hg19 released ENCFF737PIO bam unfiltered alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 100 ENCFF338EIM, ENCFF643CGH, ENCFF873VGP 5281962255 ENCODE Processing Pipeline d14c16a1a4102168c69433d2dc70df36 https://www.encodeproject.org/files/ENCFF737PIO/@@download/ENCFF737PIO.bam GRCh38 released ENCFF655ILW bam unfiltered alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 100 ENCFF349RWV, ENCFF463BOF, ENCFF643CGH 4768541571 ENCODE Processing Pipeline f3a13f401a9e24bbb83d0fbfe3db524c https://www.encodeproject.org/files/ENCFF655ILW/@@download/ENCFF655ILW.bam GRCh38 released ENCFF510TME bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 100 ENCFF349RWV, ENCFF463BOF, ENCFF643CGH 4030349749 ENCODE Processing Pipeline fcbc29f9633469abeb505746bfd4cb77 https://www.encodeproject.org/files/ENCFF510TME/@@download/ENCFF510TME.bam GRCh38 released ENCFF266AHN bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 100 ENCFF338EIM, ENCFF643CGH, ENCFF873VGP 4453357171 ENCODE Processing Pipeline d016fed12849bd1e6f4349b447304824 https://www.encodeproject.org/files/ENCFF266AHN/@@download/ENCFF266AHN.bam GRCh38 released ENCFF084GBL bigWig signal p-value ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF190EPQ, ENCFF266AHN 1208604211 ENCODE Processing Pipeline 64b65823ada6c156bfca1e12dbc2ee71 https://www.encodeproject.org/files/ENCFF084GBL/@@download/ENCFF084GBL.bigWig GRCh38 released ENCFF804AKF bigWig signal p-value ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF510TME, ENCFF950AXC 1022922170 ENCODE Processing Pipeline 087bac1b852952e8d1dbc00e6f36464f https://www.encodeproject.org/files/ENCFF804AKF/@@download/ENCFF804AKF.bigWig GRCh38 released ENCFF926FLG bigWig signal p-value ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF190EPQ, ENCFF266AHN, ENCFF510TME, ENCFF950AXC 1679250685 ENCODE Processing Pipeline 630bb2aefe42a381d4f88124c3cf131a https://www.encodeproject.org/files/ENCFF926FLG/@@download/ENCFF926FLG.bigWig GRCh38 released ENCFF669LRF bigWig fold change over control ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF190EPQ, ENCFF266AHN 1215316819 ENCODE Processing Pipeline d26a46dd0bc52bc4b7f4b7247b2d5d25 https://www.encodeproject.org/files/ENCFF669LRF/@@download/ENCFF669LRF.bigWig GRCh38 released ENCFF331MAC bigWig fold change over control ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF510TME, ENCFF950AXC 1030845325 ENCODE Processing Pipeline 8eee76e03de408b5e5ee185552676e1e https://www.encodeproject.org/files/ENCFF331MAC/@@download/ENCFF331MAC.bigWig GRCh38 released ENCFF366QWA bigWig fold change over control ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF190EPQ, ENCFF266AHN, ENCFF510TME, ENCFF950AXC 2044715426 ENCODE Processing Pipeline 44dc20ad07be8b96af7969cd174cb68e https://www.encodeproject.org/files/ENCFF366QWA/@@download/ENCFF366QWA.bigWig GRCh38 released ENCFF004WGM bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF190EPQ, ENCFF266AHN, ENCFF510TME, ENCFF950AXC 7088762 ENCODE Processing Pipeline 5d04205303f9ea107b5967b9d5481238 https://www.encodeproject.org/files/ENCFF004WGM/@@download/ENCFF004WGM.bed.gz GRCh38 released ENCFF739FJY bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF190EPQ, ENCFF266AHN 6414030 ENCODE Processing Pipeline 2f1396dfeca37ae31a37a854590f51fd https://www.encodeproject.org/files/ENCFF739FJY/@@download/ENCFF739FJY.bed.gz GRCh38 released ENCFF910JCG bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF510TME, ENCFF950AXC 6287167 ENCODE Processing Pipeline a580852a7fade307ea569e92d72598a4 https://www.encodeproject.org/files/ENCFF910JCG/@@download/ENCFF910JCG.bed.gz GRCh38 released ENCFF342FLF bigBed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF910JCG 11492778 ENCODE Processing Pipeline 924adbf706ac79f2044f5a9897e4ffd7 https://www.encodeproject.org/files/ENCFF342FLF/@@download/ENCFF342FLF.bigBed GRCh38 released ENCFF662HCG bigBed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF739FJY 11464655 ENCODE Processing Pipeline 8852eca69d5e338e789fcb26986ca5cb https://www.encodeproject.org/files/ENCFF662HCG/@@download/ENCFF662HCG.bigBed GRCh38 released ENCFF498PHD bed narrowPeak conservative idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF004WGM, ENCFF419RSJ, ENCFF739FJY, ENCFF910JCG 499526 ENCODE Processing Pipeline 14d9bc4545ebc24521c46456230a97f1 https://www.encodeproject.org/files/ENCFF498PHD/@@download/ENCFF498PHD.bed.gz GRCh38 released ENCFF282AEG bigBed narrowPeak conservative idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF498PHD 930637 ENCODE Processing Pipeline e05d8efd3021afa4f383e94108c0e1e0 https://www.encodeproject.org/files/ENCFF282AEG/@@download/ENCFF282AEG.bigBed GRCh38 released ENCFF443FRL bigBed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF004WGM 11542522 ENCODE Processing Pipeline ea943041c9c3666dd8af610bf354bc4e https://www.encodeproject.org/files/ENCFF443FRL/@@download/ENCFF443FRL.bigBed GRCh38 released ENCFF562FMQ bed narrowPeak optimal idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF004WGM, ENCFF419RSJ, ENCFF739FJY, ENCFF910JCG 639395 ENCODE Processing Pipeline 21f74dd6593f61e4daf5eb1462bc6967 https://www.encodeproject.org/files/ENCFF562FMQ/@@download/ENCFF562FMQ.bed.gz GRCh38 released ENCFF276SJY bigBed narrowPeak optimal idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF562FMQ 1119597 ENCODE Processing Pipeline a98f113921a0cf698a153a5837699a67 https://www.encodeproject.org/files/ENCFF276SJY/@@download/ENCFF276SJY.bigBed GRCh38 released ENCFF777ZCS bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF207NEA, ENCFF449NNE, ENCFF766FGH, ENCFF999EQI 7160980 ENCODE Processing Pipeline 2eaa3ddb496371afbd1373c7773b412b https://www.encodeproject.org/files/ENCFF777ZCS/@@download/ENCFF777ZCS.bed.gz hg19 released ENCFF455SML bigBed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF777ZCS 11618782 ENCODE Processing Pipeline 6d4a29ae2d217b20f324531036583bf9 https://www.encodeproject.org/files/ENCFF455SML/@@download/ENCFF455SML.bigBed hg19 released ENCFF195CEA bigWig fold change over control ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF207NEA, ENCFF449NNE 1216406941 ENCODE Processing Pipeline fd63efab916d73da2557f67759cc9e4a https://www.encodeproject.org/files/ENCFF195CEA/@@download/ENCFF195CEA.bigWig hg19 released ENCFF992LEH bigBed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF471EDO 11439092 ENCODE Processing Pipeline 65dd88d36fd42e0cae984f2a696e0960 https://www.encodeproject.org/files/ENCFF992LEH/@@download/ENCFF992LEH.bigBed hg19 released ENCFF465OLV bigBed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF233WRK 11465605 ENCODE Processing Pipeline 566a843f5165b7fd26b25a810c05d67c https://www.encodeproject.org/files/ENCFF465OLV/@@download/ENCFF465OLV.bigBed hg19 released ENCFF996CDU bigWig signal p-value ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF207NEA, ENCFF449NNE 1060295869 ENCODE Processing Pipeline 486f8b6896dce41bbc9c337879abef72 https://www.encodeproject.org/files/ENCFF996CDU/@@download/ENCFF996CDU.bigWig hg19 released ENCFF233WRK bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF766FGH, ENCFF999EQI 6273667 ENCODE Processing Pipeline bf9c6ff41f824cfacebeaaf81e8d3024 https://www.encodeproject.org/files/ENCFF233WRK/@@download/ENCFF233WRK.bed.gz hg19 released ENCFF471EDO bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF207NEA, ENCFF449NNE 6397733 ENCODE Processing Pipeline 7d121d6e7631413064a897e119812a8d https://www.encodeproject.org/files/ENCFF471EDO/@@download/ENCFF471EDO.bed.gz hg19 released ENCFF634BXB bed narrowPeak conservative idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF233WRK, ENCFF471EDO, ENCFF777ZCS 524426 ENCODE Processing Pipeline fe2729f2d45daae15fd5ef67b84c5386 https://www.encodeproject.org/files/ENCFF634BXB/@@download/ENCFF634BXB.bed.gz hg19 released ENCFF147ZVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF634BXB 962236 ENCODE Processing Pipeline 1d11da3cb0d6a4bfae59e93d8292a4b9 https://www.encodeproject.org/files/ENCFF147ZVZ/@@download/ENCFF147ZVZ.bigBed hg19 released ENCFF038GAF bigBed narrowPeak optimal idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF453CYS 1147247 ENCODE Processing Pipeline e143af0908d448047990cffe05d1124a https://www.encodeproject.org/files/ENCFF038GAF/@@download/ENCFF038GAF.bigBed hg19 released ENCFF453CYS bed narrowPeak optimal idr thresholded peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF233WRK, ENCFF471EDO, ENCFF777ZCS 662021 ENCODE Processing Pipeline 65e3de7b1b6c017563759ecdd75a19e1 https://www.encodeproject.org/files/ENCFF453CYS/@@download/ENCFF453CYS.bed.gz hg19 released ENCFF062RFF fastq reads ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 626417555 Xiang-Dong Fu, UCSD 6eb23200806be7471ab5b3f1df59a792 https://www.encodeproject.org/files/ENCFF062RFF/@@download/ENCFF062RFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF310PFX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF343ZNR fastq reads ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 606452840 Xiang-Dong Fu, UCSD b48be5f03116339118305d8349c82ebb https://www.encodeproject.org/files/ENCFF343ZNR/@@download/ENCFF343ZNR.fastq.gz Illumina HiSeq 2000 /files/ENCFF282ICF/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF640GTY bam unfiltered alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF062RFF, ENCFF643CGH 825083322 ENCODE Processing Pipeline 5fc12d72e518f8cedb708f10315f2e9b https://www.encodeproject.org/files/ENCFF640GTY/@@download/ENCFF640GTY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF639ZRX bam unfiltered alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF343ZNR, ENCFF643CGH 851550957 ENCODE Processing Pipeline 09d128d3dc1b8d25d5363528eff820db https://www.encodeproject.org/files/ENCFF639ZRX/@@download/ENCFF639ZRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF707ALH bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF062RFF, ENCFF643CGH 392093935 ENCODE Processing Pipeline 67ae1eef5ee07f808e629c3ddc189bec https://www.encodeproject.org/files/ENCFF707ALH/@@download/ENCFF707ALH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF954VXM bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF343ZNR, ENCFF643CGH 533043399 ENCODE Processing Pipeline bb11a8957e5dcc76ce1e8ef68eb0c96c https://www.encodeproject.org/files/ENCFF954VXM/@@download/ENCFF954VXM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF894ROM bam unfiltered alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF062RFF, ENCFF807MUK 822819234 ENCODE Processing Pipeline d7302cc59f406d34c675679d908fb900 https://www.encodeproject.org/files/ENCFF894ROM/@@download/ENCFF894ROM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF994SVB bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF062RFF, ENCFF807MUK 392702019 ENCODE Processing Pipeline ba6b370e34a6315085248f14f0fb87d5 https://www.encodeproject.org/files/ENCFF994SVB/@@download/ENCFF994SVB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF269YPC bam unfiltered alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF343ZNR, ENCFF807MUK 848576449 ENCODE Processing Pipeline e87ab644f0277561537f0998e7b85489 https://www.encodeproject.org/files/ENCFF269YPC/@@download/ENCFF269YPC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF362LCQ bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF343ZNR, ENCFF807MUK 533669744 ENCODE Processing Pipeline dc329a9b129af2f3c54d4ceb40960b8f https://www.encodeproject.org/files/ENCFF362LCQ/@@download/ENCFF362LCQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF316ZVA bigWig fold change over control ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF322OEH, ENCFF707WXP, ENCFF954VXM 430111720 ENCODE Processing Pipeline 95cad89842bd5c7b48f65a6d84705e7e https://www.encodeproject.org/files/ENCFF316ZVA/@@download/ENCFF316ZVA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF130UEI bigWig signal p-value ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF322OEH, ENCFF707ALH, ENCFF707WXP, ENCFF954VXM 871470351 ENCODE Processing Pipeline 3900fbc069e39cda45189d8ecefbb7ed https://www.encodeproject.org/files/ENCFF130UEI/@@download/ENCFF130UEI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF020YTL bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF322OEH, ENCFF707WXP, ENCFF954VXM 5109014 ENCODE Processing Pipeline 80158806d8ab9ce4af40ecee2ccbc9e1 https://www.encodeproject.org/files/ENCFF020YTL/@@download/ENCFF020YTL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF796TKZ bigBed narrowPeak conservative idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF228MLP 129476 ENCODE Processing Pipeline 09f12cb6ec17e88c1484f2fa170ec82c https://www.encodeproject.org/files/ENCFF796TKZ/@@download/ENCFF796TKZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF844GGM bigBed narrowPeak optimal idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF031LBW 171608 ENCODE Processing Pipeline 55ea7149a4a704fe56b2e30c237904ef https://www.encodeproject.org/files/ENCFF844GGM/@@download/ENCFF844GGM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF922LTP bigWig signal p-value ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF322OEH, ENCFF707ALH, ENCFF707WXP 717833088 ENCODE Processing Pipeline 3238e6a136c45241d42e3072044e951c https://www.encodeproject.org/files/ENCFF922LTP/@@download/ENCFF922LTP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF939QSQ bigWig signal p-value ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF322OEH, ENCFF707WXP, ENCFF954VXM 731596528 ENCODE Processing Pipeline 8451afec43ba0adbcbf302edb2be0d07 https://www.encodeproject.org/files/ENCFF939QSQ/@@download/ENCFF939QSQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF228MLP bed narrowPeak conservative idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF020YTL, ENCFF419RSJ, ENCFF693PBB, ENCFF886VSQ 38096 ENCODE Processing Pipeline 9a289b27ec28dd212b96b819f4da4b59 https://www.encodeproject.org/files/ENCFF228MLP/@@download/ENCFF228MLP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF025MRW bigWig fold change over control ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF322OEH, ENCFF707ALH, ENCFF707WXP 379667478 ENCODE Processing Pipeline 99eae38d75c764cf9b917ce15bf060b8 https://www.encodeproject.org/files/ENCFF025MRW/@@download/ENCFF025MRW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF300ORZ bigBed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF886VSQ 12951559 ENCODE Processing Pipeline 7c63f700249f85e788aa14f563e6c692 https://www.encodeproject.org/files/ENCFF300ORZ/@@download/ENCFF300ORZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF635QCK bigBed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF020YTL 10904171 ENCODE Processing Pipeline 284dba76dccf26fbca99efe46e2e0202 https://www.encodeproject.org/files/ENCFF635QCK/@@download/ENCFF635QCK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF222TTP bigWig fold change over control ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF322OEH, ENCFF707ALH, ENCFF707WXP, ENCFF954VXM 679821486 ENCODE Processing Pipeline c1e07c5a186e737ea1bea0aa1c85cd21 https://www.encodeproject.org/files/ENCFF222TTP/@@download/ENCFF222TTP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF886VSQ bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF322OEH, ENCFF707ALH, ENCFF707WXP 5616578 ENCODE Processing Pipeline d047ad39457af38456864330d2b9baf1 https://www.encodeproject.org/files/ENCFF886VSQ/@@download/ENCFF886VSQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF693PBB bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF322OEH, ENCFF707ALH, ENCFF707WXP, ENCFF954VXM 6261132 ENCODE Processing Pipeline e7cb2e53f77ec0da5c3a39bc8bbaf856 https://www.encodeproject.org/files/ENCFF693PBB/@@download/ENCFF693PBB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF734FJO bigBed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF693PBB 13160613 ENCODE Processing Pipeline c1f35b564e46ab8513a1f474ae0d0c3e https://www.encodeproject.org/files/ENCFF734FJO/@@download/ENCFF734FJO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF031LBW bed narrowPeak optimal idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF020YTL, ENCFF419RSJ, ENCFF693PBB, ENCFF886VSQ 63344 ENCODE Processing Pipeline 0265ee489fc99266cce97837f12ce49c https://www.encodeproject.org/files/ENCFF031LBW/@@download/ENCFF031LBW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF894VMR bigWig signal p-value ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021UBI, ENCFF363VZX, ENCFF994SVB 770202409 ENCODE Processing Pipeline 720631f02c184f6afa9719d63c56691e https://www.encodeproject.org/files/ENCFF894VMR/@@download/ENCFF894VMR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF248JIX bigWig fold change over control ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021UBI, ENCFF363VZX, ENCFF994SVB 357886264 ENCODE Processing Pipeline d7217f0688ce8eb6ffd0bb17a22de613 https://www.encodeproject.org/files/ENCFF248JIX/@@download/ENCFF248JIX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF827BBB bigWig signal p-value ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX 827759252 ENCODE Processing Pipeline 05deb77da8e6c4c698696202defc26e0 https://www.encodeproject.org/files/ENCFF827BBB/@@download/ENCFF827BBB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF815PXP bigWig signal p-value ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX, ENCFF994SVB 863492856 ENCODE Processing Pipeline c7a7b0eb5d3145b4e07244b7f192bf80 https://www.encodeproject.org/files/ENCFF815PXP/@@download/ENCFF815PXP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF421GPF bigWig fold change over control ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX 413147037 ENCODE Processing Pipeline c9298be8f26ce70060a5d64728e5c4bb https://www.encodeproject.org/files/ENCFF421GPF/@@download/ENCFF421GPF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF564LXA bigWig fold change over control ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX, ENCFF994SVB 680977457 ENCODE Processing Pipeline 166a8043415a7b222277018f3ff27249 https://www.encodeproject.org/files/ENCFF564LXA/@@download/ENCFF564LXA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF940FLJ bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX 5027787 ENCODE Processing Pipeline 5057416e8c59b4279a3347419a9b74e7 https://www.encodeproject.org/files/ENCFF940FLJ/@@download/ENCFF940FLJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF508IWP bigBed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF774WWH 12943912 ENCODE Processing Pipeline d75d667e47803d434272d72c82ffef78 https://www.encodeproject.org/files/ENCFF508IWP/@@download/ENCFF508IWP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF085CEK bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX, ENCFF994SVB 6342319 ENCODE Processing Pipeline 3b7ec3b66870aa2a9312c7c6a9ba0937 https://www.encodeproject.org/files/ENCFF085CEK/@@download/ENCFF085CEK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF774WWH bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021UBI, ENCFF363VZX, ENCFF994SVB 5619349 ENCODE Processing Pipeline 370dd3a144b1926ea5dc3d55c9ad2750 https://www.encodeproject.org/files/ENCFF774WWH/@@download/ENCFF774WWH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF295CZQ bigBed narrowPeak conservative idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF011DOP 149805 ENCODE Processing Pipeline bc9d1e25874fbed23c93bca289d1629b https://www.encodeproject.org/files/ENCFF295CZQ/@@download/ENCFF295CZQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF173KDL bigBed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF940FLJ 10883016 ENCODE Processing Pipeline 164e1d2fcf5cf88fd99f0da113198d0d https://www.encodeproject.org/files/ENCFF173KDL/@@download/ENCFF173KDL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF093OUB bed narrowPeak optimal idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF085CEK, ENCFF774WWH, ENCFF940FLJ 68983 ENCODE Processing Pipeline 0a4e7d993d80ecf65920797b2053a03d https://www.encodeproject.org/files/ENCFF093OUB/@@download/ENCFF093OUB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF011DOP bed narrowPeak conservative idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF085CEK, ENCFF774WWH, ENCFF940FLJ 38830 ENCODE Processing Pipeline e57e80ed785ef078bce9144a887838dc https://www.encodeproject.org/files/ENCFF011DOP/@@download/ENCFF011DOP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF290TBE bigBed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF085CEK 13151209 ENCODE Processing Pipeline 9401f6497079a153ffd45270c186a83b https://www.encodeproject.org/files/ENCFF290TBE/@@download/ENCFF290TBE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF659RUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF093OUB 209169 ENCODE Processing Pipeline 62a2a432c710f127b0b5d8b5edc98f23 https://www.encodeproject.org/files/ENCFF659RUZ/@@download/ENCFF659RUZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF000XFA bam alignments ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XFS 444257078 Michael Snyder, Stanford d2eaee9cb031509db7ea7f6d6cbe5208 https://www.encodeproject.org/files/ENCFF000XFA/@@download/ENCFF000XFA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XFE bigBed narrowPeak peaks ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIO 423850 Michael Snyder, Stanford 7cd740c14c8a4ffb925f01bb40bd1d25 https://www.encodeproject.org/files/ENCFF000XFE/@@download/ENCFF000XFE.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XFF bam alignments ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XFT 415662837 Michael Snyder, Stanford 61795b9d264890dcdbbb5c3c519be6be https://www.encodeproject.org/files/ENCFF000XFF/@@download/ENCFF000XFF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XFG bam alignments ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XFU 587752429 Michael Snyder, Stanford 6ff1bd0e16594ce2454af6a1109e6a53 https://www.encodeproject.org/files/ENCFF000XFG/@@download/ENCFF000XFG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XFH bigWig signal ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 415103508 Michael Snyder, Stanford 0a08fa010318583bea2d16b118124dfb https://www.encodeproject.org/files/ENCFF000XFH/@@download/ENCFF000XFH.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XFS fastq reads ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 330540736 Michael Snyder, Stanford 7899d3573715d5b79b986bbcd9c8d579 https://www.encodeproject.org/files/ENCFF000XFS/@@download/ENCFF000XFS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIG/ released biological replicates with identical biosample insufficient read length ENCFF000XFT fastq reads ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 3 1 29 single-ended 301166191 Michael Snyder, Stanford ce0de0f25d25bf03680d25bc73fb5458 https://www.encodeproject.org/files/ENCFF000XFT/@@download/ENCFF000XFT.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XFU fastq reads ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 1 29 single-ended 434945817 Michael Snyder, Stanford 7894cade8688dbace4f30a77f3189f67 https://www.encodeproject.org/files/ENCFF000XFU/@@download/ENCFF000XFU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIH/ released biological replicates with identical biosample insufficient read length ENCFF001VIO bed narrowPeak peaks ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 196445 Michael Snyder, Stanford 9597e5d4e2ba9d5e170c33f6a40cda47 https://www.encodeproject.org/files/ENCFF001VIO/@@download/ENCFF001VIO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CSN bed narrowPeak optimal idr thresholded peaks ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 162755 ENCODE Consortium Analysis Working Group 9fd526bcf7c99300f6f16574f691c695 https://www.encodeproject.org/files/ENCFF002CSN/@@download/ENCFF002CSN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF659KYP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSN 367761 ENCODE Consortium 1639f298bb023ba4e3e48f6914f083e1 https://www.encodeproject.org/files/ENCFF659KYP/@@download/ENCFF659KYP.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF135UCD fastq reads ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 76 single-ended 1221586430 Bradley Bernstein, Broad cd7f7bb4020446a7f42a0cd7ba44c407 https://www.encodeproject.org/files/ENCFF135UCD/@@download/ENCFF135UCD.fastq.gz Illumina HiSeq 2500 /files/ENCFF505NFA/ released inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF202YVD fastq reads ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 1 76 single-ended 1219241852 Bradley Bernstein, Broad 4e9f38c063083f5d6b3cb513b062756f https://www.encodeproject.org/files/ENCFF202YVD/@@download/ENCFF202YVD.fastq.gz Illumina HiSeq 2500 /files/ENCFF505NFA/ released inconsistent control read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF537HUP fastq reads ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 1 25 paired-ended 1 ENCFF802WQZ 489981487 Bradley Bernstein, Broad 851e04e53e0a9534174bb9d47db8645b https://www.encodeproject.org/files/ENCFF537HUP/@@download/ENCFF537HUP.fastq.gz Illumina HiSeq 2000 archived antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by ENCFF802WQZ fastq reads ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 1 25 paired-ended 2 ENCFF537HUP 493182328 Bradley Bernstein, Broad d32107c96915859d13040b9d86653a50 https://www.encodeproject.org/files/ENCFF802WQZ/@@download/ENCFF802WQZ.fastq.gz Illumina HiSeq 2000 archived antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by ENCFF304ZQU fastq reads ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 1 25 paired-ended 1 ENCFF043HPS 492023585 Bradley Bernstein, Broad a3d64fcc63f14f16d9893e1b2e8d4543 https://www.encodeproject.org/files/ENCFF304ZQU/@@download/ENCFF304ZQU.fastq.gz Illumina HiSeq 2000 archived antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by ENCFF043HPS fastq reads ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 1 25 paired-ended 2 ENCFF304ZQU 491477798 Bradley Bernstein, Broad 137722079fa081c11aaac7ad681b3503 https://www.encodeproject.org/files/ENCFF043HPS/@@download/ENCFF043HPS.fastq.gz Illumina HiSeq 2000 archived antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing controlled_by ENCFF868CKN bam alignments ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF135UCD, ENCFF202YVD, ENCFF643CGH 1076517565 ENCODE Processing Pipeline ca4f7176af5c1520d623355811d37b4b https://www.encodeproject.org/files/ENCFF868CKN/@@download/ENCFF868CKN.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF139TNF bam unfiltered alignments ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF135UCD, ENCFF202YVD, ENCFF643CGH 1572255630 ENCODE Processing Pipeline 77d488d09367cfbbc59b08167fefdcb8 https://www.encodeproject.org/files/ENCFF139TNF/@@download/ENCFF139TNF.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF708WIV bam alignments ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF135UCD, ENCFF202YVD, ENCFF807MUK 1076982133 ENCODE Processing Pipeline 567d90bd3aaba1a41601a8b56f903fc0 https://www.encodeproject.org/files/ENCFF708WIV/@@download/ENCFF708WIV.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF277XUD bam unfiltered alignments ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF135UCD, ENCFF202YVD, ENCFF807MUK 1565056803 ENCODE Processing Pipeline 67c8eaaa54657e3472b56cf880c757d9 https://www.encodeproject.org/files/ENCFF277XUD/@@download/ENCFF277XUD.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF048DZP bigWig fold change over control ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF505ZSL, ENCFF708WIV 825369584 ENCODE Processing Pipeline 6d5e19cfc82b8d68d1222ea61f4c42a4 https://www.encodeproject.org/files/ENCFF048DZP/@@download/ENCFF048DZP.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF070PNW bigWig signal p-value ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF505ZSL, ENCFF708WIV 801354466 ENCODE Processing Pipeline fabea3de279b1b401d48680f0a9b04ca https://www.encodeproject.org/files/ENCFF070PNW/@@download/ENCFF070PNW.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF815GPU bed narrowPeak peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF505ZSL, ENCFF708WIV 7028386 ENCODE Processing Pipeline d6534010d793507e92522781e0492530 https://www.encodeproject.org/files/ENCFF815GPU/@@download/ENCFF815GPU.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF702EFD bigBed narrowPeak peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF815GPU 12398062 ENCODE Processing Pipeline 6de0e3f02f019b38f3e0cfcfea0cc726 https://www.encodeproject.org/files/ENCFF702EFD/@@download/ENCFF702EFD.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF373JXT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF001TDO, ENCFF815GPU 70301 ENCODE Processing Pipeline 88cd61c1156986a194dbc1fa35a80cfd https://www.encodeproject.org/files/ENCFF373JXT/@@download/ENCFF373JXT.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF240UJF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF373JXT 228440 ENCODE Processing Pipeline 779e72e8b88f7fb1942e816107fa4f45 https://www.encodeproject.org/files/ENCFF240UJF/@@download/ENCFF240UJF.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF035WFT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF419RSJ, ENCFF466DHA 76441 ENCODE Processing Pipeline edbb3f99be2c0e3b9419dc4d59d6ef31 https://www.encodeproject.org/files/ENCFF035WFT/@@download/ENCFF035WFT.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF631GVD bigBed narrowPeak peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF466DHA 12402030 ENCODE Processing Pipeline d533790fb2ae807d8b6ce6e880f8a120 https://www.encodeproject.org/files/ENCFF631GVD/@@download/ENCFF631GVD.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF302JNE bigWig signal p-value ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF868CKN, ENCFF989JQG 798835246 ENCODE Processing Pipeline 5ad61231ddd1a09a327cae7a01771b4f https://www.encodeproject.org/files/ENCFF302JNE/@@download/ENCFF302JNE.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF466DHA bed narrowPeak peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF868CKN, ENCFF989JQG 7031327 ENCODE Processing Pipeline 041570f27cca2800fcbe47abb330dd4f https://www.encodeproject.org/files/ENCFF466DHA/@@download/ENCFF466DHA.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF674XUJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF035WFT 239301 ENCODE Processing Pipeline bed3ec0b69cb46523620a3caf3213dfb https://www.encodeproject.org/files/ENCFF674XUJ/@@download/ENCFF674XUJ.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF642OLV bigWig fold change over control ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF868CKN, ENCFF989JQG 824676051 ENCODE Processing Pipeline 989779a697375512e5591a36d892d145 https://www.encodeproject.org/files/ENCFF642OLV/@@download/ENCFF642OLV.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF846FJT fastq reads ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 1 75 single-ended 1821679397 Bradley Bernstein, Broad ba80ff1718093989065132a14e3ec1f9 SRA:SRR6213229 https://www.encodeproject.org/files/ENCFF846FJT/@@download/ENCFF846FJT.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released ENCFF533CYJ fastq reads ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 1 76 single-ended 1248183709 Bradley Bernstein, Broad 77837bd778c3ad41cad6955656a38367 SRA:SRR6213228 https://www.encodeproject.org/files/ENCFF533CYJ/@@download/ENCFF533CYJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released ENCFF769EMA bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF643CGH 1509248398 ENCODE Processing Pipeline 9a6cadf4e410cf37e0680ea9c02e4187 https://www.encodeproject.org/files/ENCFF769EMA/@@download/ENCFF769EMA.bam GRCh38 released ENCFF312DFB bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF807MUK 1509575426 ENCODE Processing Pipeline a1cef67d583c77280bf939ece3836c78 https://www.encodeproject.org/files/ENCFF312DFB/@@download/ENCFF312DFB.bam hg19 released ENCFF793CEU bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF643CGH, ENCFF846FJT 2175631493 ENCODE Processing Pipeline 7038ea0c0036f16d8354a01c3fd6e8f1 https://www.encodeproject.org/files/ENCFF793CEU/@@download/ENCFF793CEU.bam GRCh38 released ENCFF909TCN bam unfiltered alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF807MUK, ENCFF846FJT 2173164044 ENCODE Processing Pipeline 019fa2274d091b74329f1c0ea5804933 https://www.encodeproject.org/files/ENCFF909TCN/@@download/ENCFF909TCN.bam hg19 released ENCFF954FIU bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF643CGH, ENCFF846FJT 1704738337 ENCODE Processing Pipeline 75d531eab82fb3ff2060d909ad641be8 https://www.encodeproject.org/files/ENCFF954FIU/@@download/ENCFF954FIU.bam GRCh38 released ENCFF122XZP bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF643CGH 1196705660 ENCODE Processing Pipeline c736da90a86f8fabf13154f5f775bf4b https://www.encodeproject.org/files/ENCFF122XZP/@@download/ENCFF122XZP.bam GRCh38 released ENCFF839OMX bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF807MUK 1190867476 ENCODE Processing Pipeline 6f11fdef0995fb297e1fac3f7949a7c4 https://www.encodeproject.org/files/ENCFF839OMX/@@download/ENCFF839OMX.bam hg19 released ENCFF432IXF bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF807MUK, ENCFF846FJT 1698277334 ENCODE Processing Pipeline 819ffa3371289e53016648ce360cd402 https://www.encodeproject.org/files/ENCFF432IXF/@@download/ENCFF432IXF.bam hg19 released ENCFF685TSM bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 1104629499 ENCODE Processing Pipeline daf1c25214fc7d97ec3201a1e283dd27 https://www.encodeproject.org/files/ENCFF685TSM/@@download/ENCFF685TSM.bigWig hg19 released ENCFF815UDU bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1381096531 ENCODE Processing Pipeline c82b3a99a64c4834f34834117d4fd14b https://www.encodeproject.org/files/ENCFF815UDU/@@download/ENCFF815UDU.bigWig GRCh38 released ENCFF265ZCW bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1043046505 ENCODE Processing Pipeline b96475d39564c28f4519782b774b9632 https://www.encodeproject.org/files/ENCFF265ZCW/@@download/ENCFF265ZCW.bigWig GRCh38 released ENCFF273AOL bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 1059623032 ENCODE Processing Pipeline 29bb27ad3e6161b2b830a3c5c86e68ea https://www.encodeproject.org/files/ENCFF273AOL/@@download/ENCFF273AOL.bigWig hg19 released ENCFF302SFE bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH 1000639015 ENCODE Processing Pipeline 4bc75cc52dc32172c194e3c44915253e https://www.encodeproject.org/files/ENCFF302SFE/@@download/ENCFF302SFE.bigWig GRCh38 released ENCFF451XIK bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 1167587869 ENCODE Processing Pipeline 55d389a2f5b298652d328dff25c10413 https://www.encodeproject.org/files/ENCFF451XIK/@@download/ENCFF451XIK.bigWig hg19 released ENCFF638GYB bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1057459341 ENCODE Processing Pipeline 932d4bab041c474a9ce837bf8d081a3e https://www.encodeproject.org/files/ENCFF638GYB/@@download/ENCFF638GYB.bigWig GRCh38 released ENCFF541WVD bigWig signal p-value ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 1006935831 ENCODE Processing Pipeline 07c4be584bb59f749b738fadc3ce3528 https://www.encodeproject.org/files/ENCFF541WVD/@@download/ENCFF541WVD.bigWig hg19 released ENCFF013RIS bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 868714763 ENCODE Processing Pipeline 1e121db6f7cbb72481949782f8960584 https://www.encodeproject.org/files/ENCFF013RIS/@@download/ENCFF013RIS.bigWig hg19 released ENCFF675TUL bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 1446455589 ENCODE Processing Pipeline 9ee050fe8a99674522a853861b43afa9 https://www.encodeproject.org/files/ENCFF675TUL/@@download/ENCFF675TUL.bigWig hg19 released ENCFF116DRU bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF080QIA 13634548 ENCODE Processing Pipeline d34abf3cab4dfb240820ba752eb4c500 https://www.encodeproject.org/files/ENCFF116DRU/@@download/ENCFF116DRU.bigBed hg19 released ENCFF107UHX bed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF080QIA, ENCFF436WQE, ENCFF501TBE 29592 ENCODE Processing Pipeline 9a585121f338bdd33ad5fbf971a5b1a3 https://www.encodeproject.org/files/ENCFF107UHX/@@download/ENCFF107UHX.bed.gz hg19 released ENCFF064AED bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH 868030760 ENCODE Processing Pipeline 5377628ef3563c229cd5e8cc6585cdb2 https://www.encodeproject.org/files/ENCFF064AED/@@download/ENCFF064AED.bigWig GRCh38 released ENCFF159SQB bigWig fold change over control ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 1393899627 ENCODE Processing Pipeline 1f4e2d041de299606fc7f7856878a167 https://www.encodeproject.org/files/ENCFF159SQB/@@download/ENCFF159SQB.bigWig GRCh38 released ENCFF180RQQ bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 5891608 ENCODE Processing Pipeline 637632ee11138bbb6f47d28dc5619d5e https://www.encodeproject.org/files/ENCFF180RQQ/@@download/ENCFF180RQQ.bed.gz GRCh38 released ENCFF758YRK bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH, ENCFF954FIU 6868439 ENCODE Processing Pipeline a517efb880bfb6d93a65ffc51cbb7ba3 https://www.encodeproject.org/files/ENCFF758YRK/@@download/ENCFF758YRK.bed.gz GRCh38 released ENCFF501TBE bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 6383565 ENCODE Processing Pipeline aad3a9b2193706c9236a2257ad2da9d9 https://www.encodeproject.org/files/ENCFF501TBE/@@download/ENCFF501TBE.bed.gz hg19 released ENCFF620SXG bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF758YRK 13443725 ENCODE Processing Pipeline 8778cb8ca59216f5c07278447b1e7870 https://www.encodeproject.org/files/ENCFF620SXG/@@download/ENCFF620SXG.bigBed GRCh38 released ENCFF049JNL bigBed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF221BCO 112133 ENCODE Processing Pipeline 49a7a55679a4f4a22f2cdac25a93088f https://www.encodeproject.org/files/ENCFF049JNL/@@download/ENCFF049JNL.bigBed GRCh38 released ENCFF974QXE bigBed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF645CEC 94418 ENCODE Processing Pipeline 9bc37da3fa04bfb3fd6149b0f83ee977 https://www.encodeproject.org/files/ENCFF974QXE/@@download/ENCFF974QXE.bigBed hg19 released ENCFF052HOZ bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF122XZP, ENCFF142VHH, ENCFF401XXH 6198922 ENCODE Processing Pipeline 113dd47a9694ccd079933e44c2309ce9 https://www.encodeproject.org/files/ENCFF052HOZ/@@download/ENCFF052HOZ.bed.gz GRCh38 released ENCFF080QIA bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 5961445 ENCODE Processing Pipeline 20bff0afdb2ea318f0f997bbaf9d0d9e https://www.encodeproject.org/files/ENCFF080QIA/@@download/ENCFF080QIA.bed.gz hg19 released ENCFF303CTU bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF180RQQ 11507243 ENCODE Processing Pipeline 596e9d33b7256fe703eb03f9e7c0d216 https://www.encodeproject.org/files/ENCFF303CTU/@@download/ENCFF303CTU.bigBed GRCh38 released ENCFF645CEC bed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF080QIA, ENCFF436WQE, ENCFF501TBE 25236 ENCODE Processing Pipeline 19bac53993ac51017d239f2de83e322f https://www.encodeproject.org/files/ENCFF645CEC/@@download/ENCFF645CEC.bed.gz hg19 released ENCFF436WQE bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 6973407 ENCODE Processing Pipeline 5b81f1fade7273db8fe1dc650c74d3dd https://www.encodeproject.org/files/ENCFF436WQE/@@download/ENCFF436WQE.bed.gz hg19 released ENCFF634QYI bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF052HOZ 13428770 ENCODE Processing Pipeline df7b449f00b8d94fd55d65612f089e20 https://www.encodeproject.org/files/ENCFF634QYI/@@download/ENCFF634QYI.bigBed GRCh38 released ENCFF937OYR bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF501TBE 13343344 ENCODE Processing Pipeline 69574d32af05ef494983bc3a89c6725b https://www.encodeproject.org/files/ENCFF937OYR/@@download/ENCFF937OYR.bigBed hg19 released ENCFF892XTI bigBed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF299UPZ 102434 ENCODE Processing Pipeline 651eba8d8d6750c4c7d47643948a2600 https://www.encodeproject.org/files/ENCFF892XTI/@@download/ENCFF892XTI.bigBed GRCh38 released ENCFF535GUS bigBed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF436WQE 13352255 ENCODE Processing Pipeline e3d71ad6b25cb8bdf2b73dd81e96ee1d https://www.encodeproject.org/files/ENCFF535GUS/@@download/ENCFF535GUS.bigBed hg19 released ENCFF221BCO bed narrowPeak conservative idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF052HOZ, ENCFF180RQQ, ENCFF419RSJ, ENCFF758YRK 26704 ENCODE Processing Pipeline fcb0e6cb72d4f737207c7deb6d7214dd https://www.encodeproject.org/files/ENCFF221BCO/@@download/ENCFF221BCO.bed.gz GRCh38 released ENCFF299UPZ bed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF052HOZ, ENCFF180RQQ, ENCFF419RSJ, ENCFF758YRK 30119 ENCODE Processing Pipeline 47faeea4dfbd9f073d7e0ddd5c55afff https://www.encodeproject.org/files/ENCFF299UPZ/@@download/ENCFF299UPZ.bed.gz GRCh38 released ENCFF895ZRV bigBed narrowPeak optimal idr thresholded peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF107UHX 101310 ENCODE Processing Pipeline 94c12fe1be0f91722edee92f824205ed https://www.encodeproject.org/files/ENCFF895ZRV/@@download/ENCFF895ZRV.bigBed hg19 released ENCFF161LJS bigWig signal p-value ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF107PCV, ENCFF155SKN, ENCFF619YOF 690333227 ENCODE Processing Pipeline 862cc5cec69af95c3835b0251fcc6bd8 https://www.encodeproject.org/files/ENCFF161LJS/@@download/ENCFF161LJS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF764IIZ bigWig fold change over control ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF107PCV, ENCFF155SKN, ENCFF165OGY, ENCFF619YOF 647290226 ENCODE Processing Pipeline 37b56e0bd5c778083ef9eefffc5ecfaa https://www.encodeproject.org/files/ENCFF764IIZ/@@download/ENCFF764IIZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF080BMZ bigWig fold change over control ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF107PCV, ENCFF155SKN, ENCFF619YOF 431180410 ENCODE Processing Pipeline e336846f153b648584b3c8363a597b63 https://www.encodeproject.org/files/ENCFF080BMZ/@@download/ENCFF080BMZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF464FHS bigWig signal p-value ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF107PCV, ENCFF165OGY, ENCFF619YOF 755432545 ENCODE Processing Pipeline ce88e2c323b4dfaf0826219ba57a800f https://www.encodeproject.org/files/ENCFF464FHS/@@download/ENCFF464FHS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF962FFL bigWig signal p-value ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF107PCV, ENCFF155SKN, ENCFF165OGY, ENCFF619YOF 842469137 ENCODE Processing Pipeline e2a9e7ef28f5d39a743987285359a0e6 https://www.encodeproject.org/files/ENCFF962FFL/@@download/ENCFF962FFL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF084YZE bigBed narrowPeak optimal idr thresholded peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF420ALF 1236703 ENCODE Processing Pipeline f13e4ce8e34c432aca1551bc535e06b5 https://www.encodeproject.org/files/ENCFF084YZE/@@download/ENCFF084YZE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF229ZKH bigWig fold change over control ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF107PCV, ENCFF165OGY, ENCFF619YOF 547145880 ENCODE Processing Pipeline b7d059e59f465ebfbae09503ddaccd12 https://www.encodeproject.org/files/ENCFF229ZKH/@@download/ENCFF229ZKH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF948VIO bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF107PCV, ENCFF155SKN, ENCFF619YOF 6463608 ENCODE Processing Pipeline 540ffc54d35d7b61f676d492aeb8f49a https://www.encodeproject.org/files/ENCFF948VIO/@@download/ENCFF948VIO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF650BJE bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF107PCV, ENCFF165OGY, ENCFF619YOF 6755635 ENCODE Processing Pipeline 633da648805070e8fdce090d3d2c261c https://www.encodeproject.org/files/ENCFF650BJE/@@download/ENCFF650BJE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF464APE bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF107PCV, ENCFF155SKN, ENCFF165OGY, ENCFF619YOF 7040793 ENCODE Processing Pipeline 61a0952fde30fde8aa80150778a57126 https://www.encodeproject.org/files/ENCFF464APE/@@download/ENCFF464APE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF830CAJ bigBed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF948VIO 12744639 ENCODE Processing Pipeline 7d04be3dd5e410ac6d516a8f5077cac5 https://www.encodeproject.org/files/ENCFF830CAJ/@@download/ENCFF830CAJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF755VUR bigBed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF464APE 12518089 ENCODE Processing Pipeline a4f27874772d62afd7e0e6a3c46f8fbd https://www.encodeproject.org/files/ENCFF755VUR/@@download/ENCFF755VUR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF546VOE bigBed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF650BJE 12663073 ENCODE Processing Pipeline 9bf459c4c566de19abeeb2b9d3f37937 https://www.encodeproject.org/files/ENCFF546VOE/@@download/ENCFF546VOE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF420ALF bed narrowPeak optimal idr thresholded peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF464APE, ENCFF650BJE, ENCFF948VIO 588737 ENCODE Processing Pipeline 816a62c9345d0d6c0e22c6c07bb30986 https://www.encodeproject.org/files/ENCFF420ALF/@@download/ENCFF420ALF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF055MJF bigWig signal p-value ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF217UCE, ENCFF456RAQ, ENCFF825CNQ 838893618 ENCODE Processing Pipeline 2028f29c7f12a25b423dc7365d43233e https://www.encodeproject.org/files/ENCFF055MJF/@@download/ENCFF055MJF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF614GWM bigWig fold change over control ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF217UCE, ENCFF278JXM, ENCFF456RAQ, ENCFF825CNQ 649112692 ENCODE Processing Pipeline 78ab3e64ddae7e690c9c0a23b715bd09 https://www.encodeproject.org/files/ENCFF614GWM/@@download/ENCFF614GWM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF066SXN bigWig signal p-value ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF217UCE, ENCFF278JXM, ENCFF456RAQ, ENCFF825CNQ 859356379 ENCODE Processing Pipeline e38f2ce63ecd66f920afe9a576abf5f7 https://www.encodeproject.org/files/ENCFF066SXN/@@download/ENCFF066SXN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF045YCX bigBed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF208QUF 12578632 ENCODE Processing Pipeline e16e20aaeeb98b33160c9de86326448d https://www.encodeproject.org/files/ENCFF045YCX/@@download/ENCFF045YCX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF805SAD bigWig signal p-value ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF217UCE, ENCFF278JXM, ENCFF825CNQ 683989601 ENCODE Processing Pipeline 57863c4f51088c8210291ee327cda634 https://www.encodeproject.org/files/ENCFF805SAD/@@download/ENCFF805SAD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF050OGO bigWig fold change over control ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF217UCE, ENCFF278JXM, ENCFF825CNQ 433724160 ENCODE Processing Pipeline 16072819927b2c518b17a7bdecfba117 https://www.encodeproject.org/files/ENCFF050OGO/@@download/ENCFF050OGO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF946TCI bigWig fold change over control ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF217UCE, ENCFF456RAQ, ENCFF825CNQ 538612039 ENCODE Processing Pipeline 26282e7fedee9e7bcd94a87b4c993750 https://www.encodeproject.org/files/ENCFF946TCI/@@download/ENCFF946TCI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF208QUF bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF217UCE, ENCFF278JXM, ENCFF456RAQ, ENCFF825CNQ 7085276 ENCODE Processing Pipeline f99aa69331525f66be80595f64186a74 https://www.encodeproject.org/files/ENCFF208QUF/@@download/ENCFF208QUF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF160DKY bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF217UCE, ENCFF278JXM, ENCFF825CNQ 6449099 ENCODE Processing Pipeline 93fb2090b82599ffb83b532afa808c55 https://www.encodeproject.org/files/ENCFF160DKY/@@download/ENCFF160DKY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF221GWO bed narrowPeak optimal idr thresholded peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF160DKY, ENCFF208QUF, ENCFF956IIT 594558 ENCODE Processing Pipeline e742d68591af71826952747fb951f4b2 https://www.encodeproject.org/files/ENCFF221GWO/@@download/ENCFF221GWO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF956IIT bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF217UCE, ENCFF456RAQ, ENCFF825CNQ 6753850 ENCODE Processing Pipeline 99af981c76f042dc43d86c98910ff6ea https://www.encodeproject.org/files/ENCFF956IIT/@@download/ENCFF956IIT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF446DEE bigBed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF160DKY 12745288 ENCODE Processing Pipeline 0dbae942f1b58afaf86c87261d6292ee https://www.encodeproject.org/files/ENCFF446DEE/@@download/ENCFF446DEE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF261CIP bigBed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF956IIT 12657512 ENCODE Processing Pipeline 0fedf7ad2ea4e4d20d35c21b5644ec68 https://www.encodeproject.org/files/ENCFF261CIP/@@download/ENCFF261CIP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF319LNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1, 2 ENCFF221GWO 1247812 ENCODE Processing Pipeline a2c4cd5aeb519aeeb0860e09bc5cd740 https://www.encodeproject.org/files/ENCFF319LNQ/@@download/ENCFF319LNQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF395MZU fastq reads ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 1 40 single-ended 448641759 Xiang-Dong Fu, UCSD 15f427451816cb7ad76c852b14767fe3 https://www.encodeproject.org/files/ENCFF395MZU/@@download/ENCFF395MZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF319AWI/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF604MMC fastq reads ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 1 40 single-ended 455373833 Xiang-Dong Fu, UCSD 09dc22632755dbd5615d6ca56ec87b9e https://www.encodeproject.org/files/ENCFF604MMC/@@download/ENCFF604MMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF319AWI/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF380WBW fastq reads ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 1 40 single-ended 3266983681 Xiang-Dong Fu, UCSD ae981bbf0bbc6bd683d64bfa9ab3c3dc https://www.encodeproject.org/files/ENCFF380WBW/@@download/ENCFF380WBW.fastq.gz Illumina HiSeq 2500 /files/ENCFF319AWI/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF422CIB fastq reads ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 1 40 single-ended 1913730154 Xiang-Dong Fu, UCSD cc861dd8e19cf7af1ac1a8fd51f6ecbb https://www.encodeproject.org/files/ENCFF422CIB/@@download/ENCFF422CIB.fastq.gz Illumina HiSeq 2500 /files/ENCFF386QNN/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF278JXM bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 40 ENCFF422CIB, ENCFF807MUK 452537772 ENCODE Processing Pipeline 4e23cd89fbb6bd8d804eeb812a6dc986 https://www.encodeproject.org/files/ENCFF278JXM/@@download/ENCFF278JXM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155SKN bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 40 ENCFF422CIB, ENCFF643CGH 451807776 ENCODE Processing Pipeline 048bf31c67896a3878bd6a026dafd85e https://www.encodeproject.org/files/ENCFF155SKN/@@download/ENCFF155SKN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF329PYW bam unfiltered alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 40 ENCFF422CIB, ENCFF807MUK 2090016750 ENCODE Processing Pipeline 9893ccf10ad25e0aaa6a42501ed0b16e https://www.encodeproject.org/files/ENCFF329PYW/@@download/ENCFF329PYW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF852KFM bam unfiltered alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 40 ENCFF422CIB, ENCFF643CGH 2096960187 ENCODE Processing Pipeline f9ee8cece6abb65429b53f1b42c21666 https://www.encodeproject.org/files/ENCFF852KFM/@@download/ENCFF852KFM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF392OZZ bam unfiltered alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 40 ENCFF380WBW, ENCFF395MZU, ENCFF604MMC, ENCFF643CGH 4026830912 ENCODE Processing Pipeline e0be71ed8e6f381cbead212e13f63fea https://www.encodeproject.org/files/ENCFF392OZZ/@@download/ENCFF392OZZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF115JJP bam unfiltered alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 40 ENCFF380WBW, ENCFF395MZU, ENCFF604MMC, ENCFF807MUK 4012083132 ENCODE Processing Pipeline e55477d1fda509ff676f2c714baf6caf https://www.encodeproject.org/files/ENCFF115JJP/@@download/ENCFF115JJP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF165OGY bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 40 ENCFF380WBW, ENCFF395MZU, ENCFF604MMC, ENCFF643CGH 613016349 ENCODE Processing Pipeline 9d60e972496d61ba6f8ff6b0db3f5e50 https://www.encodeproject.org/files/ENCFF165OGY/@@download/ENCFF165OGY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456RAQ bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 40 ENCFF380WBW, ENCFF395MZU, ENCFF604MMC, ENCFF807MUK 613915978 ENCODE Processing Pipeline b02060f1f35053e4354c6d048380d2eb https://www.encodeproject.org/files/ENCFF456RAQ/@@download/ENCFF456RAQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000ZBE bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 586586793 Michael Snyder, Stanford 360f1c714c590965681f37822b87c499 https://www.encodeproject.org/files/ENCFF000ZBE/@@download/ENCFF000ZBE.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZBG bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPB 2875582 Michael Snyder, Stanford 865aaeb5a0857b70861edc63a5dcb7a6 https://www.encodeproject.org/files/ENCFF000ZBG/@@download/ENCFF000ZBG.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBH fastq reads ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1002188440 Michael Snyder, Stanford e055c2b30d0ae02b7076d60f9ead3b0b https://www.encodeproject.org/files/ENCFF000ZBH/@@download/ENCFF000ZBH.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBJ fastq reads ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1523575651 Michael Snyder, Stanford 7c5a5ad29dc7644a8ee8b18191580bd3 https://www.encodeproject.org/files/ENCFF000ZBJ/@@download/ENCFF000ZBJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBL bigWig signal ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 469516456 Michael Snyder, Stanford 3565a94d7ffd6fc662a46931982a5bb7 https://www.encodeproject.org/files/ENCFF000ZBL/@@download/ENCFF000ZBL.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZBM bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 785507860 Michael Snyder, Stanford 55617a27051b453be5fed59d24ac6d85 https://www.encodeproject.org/files/ENCFF000ZBM/@@download/ENCFF000ZBM.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VPB bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1157057 Michael Snyder, Stanford c4f170ccd454708a9833617832e98eda https://www.encodeproject.org/files/ENCFF001VPB/@@download/ENCFF001VPB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CYJ bed narrowPeak optimal idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 190993 ENCODE Consortium Analysis Working Group ff50199d757b891bf404ac2488933573 https://www.encodeproject.org/files/ENCFF002CYJ/@@download/ENCFF002CYJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF063UNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYJ 439190 ENCODE Consortium 1ecdaafea25737078952adae38d56286 https://www.encodeproject.org/files/ENCFF063UNZ/@@download/ENCFF063UNZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF015ZXF bam unfiltered alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZBH, ENCFF643CGH 1148559494 ENCODE Processing Pipeline 53d2601e1a59cbac0521c51c2a489ecb https://www.encodeproject.org/files/ENCFF015ZXF/@@download/ENCFF015ZXF.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF188QGH bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZBH, ENCFF643CGH 814517192 ENCODE Processing Pipeline b40b68187f57193df60a1fd61a8f8587 https://www.encodeproject.org/files/ENCFF188QGH/@@download/ENCFF188QGH.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF298NWW bam unfiltered alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBJ, ENCFF643CGH 1711972157 ENCODE Processing Pipeline 4c1685ef805a52f6c2a61f0dcc07d85e https://www.encodeproject.org/files/ENCFF298NWW/@@download/ENCFF298NWW.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF719NDH bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBJ, ENCFF643CGH 1159188367 ENCODE Processing Pipeline e4bd21387bd2bf74181f8a6f8faefe40 https://www.encodeproject.org/files/ENCFF719NDH/@@download/ENCFF719NDH.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF999RTZ bam unfiltered alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZBH, ENCFF807MUK 1143828037 ENCODE Processing Pipeline 418249c32ef4291a8d631abf527670f0 https://www.encodeproject.org/files/ENCFF999RTZ/@@download/ENCFF999RTZ.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF232HND bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZBH, ENCFF807MUK 815128030 ENCODE Processing Pipeline 9bcd68f523d0ee6019ce697c61ad0cd5 https://www.encodeproject.org/files/ENCFF232HND/@@download/ENCFF232HND.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF587GLT bam unfiltered alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBJ, ENCFF807MUK 1704668416 ENCODE Processing Pipeline 05ce54ad7e89500ba50c8f43cd0f62a5 https://www.encodeproject.org/files/ENCFF587GLT/@@download/ENCFF587GLT.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF375HMX bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBJ, ENCFF807MUK 1159869390 ENCODE Processing Pipeline 52376b4f687b8f6c25b27d39e4d11c75 https://www.encodeproject.org/files/ENCFF375HMX/@@download/ENCFF375HMX.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF850MTK bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF232HND, ENCFF375HMX, ENCFF710NTS 6177942 ENCODE Processing Pipeline 3ef47a2b6d104c8390e87b2833a15a91 https://www.encodeproject.org/files/ENCFF850MTK/@@download/ENCFF850MTK.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF349SGO bigWig signal p-value ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF232HND, ENCFF710NTS 544694523 ENCODE Processing Pipeline f9062b97da35a05773fcb55c24e93ffb https://www.encodeproject.org/files/ENCFF349SGO/@@download/ENCFF349SGO.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF708HEG bigWig fold change over control ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF232HND, ENCFF710NTS 425464036 ENCODE Processing Pipeline 93f7bd380d31c7a2d85b8ee25c665000 https://www.encodeproject.org/files/ENCFF708HEG/@@download/ENCFF708HEG.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF676HRI bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HMX, ENCFF710NTS 5153956 ENCODE Processing Pipeline 8d4df699854aa4528b138d46b01e6f27 https://www.encodeproject.org/files/ENCFF676HRI/@@download/ENCFF676HRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF751EWQ bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF676HRI 11080381 ENCODE Processing Pipeline 6376fbb8f302e2666fbb9d71aa6e947f https://www.encodeproject.org/files/ENCFF751EWQ/@@download/ENCFF751EWQ.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF128RDF bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF205BAR 10983693 ENCODE Processing Pipeline 79e7200dd310faf3a034c61d7cde49e3 https://www.encodeproject.org/files/ENCFF128RDF/@@download/ENCFF128RDF.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF791AOX bigWig signal p-value ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HMX, ENCFF710NTS 540612820 ENCODE Processing Pipeline 11f911c049ab69fee5bf220f0325e0ed https://www.encodeproject.org/files/ENCFF791AOX/@@download/ENCFF791AOX.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF563ATS bigWig fold change over control ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF232HND, ENCFF375HMX, ENCFF710NTS 789926495 ENCODE Processing Pipeline b1cbfcb951dbe3b0c3aada0670394d39 https://www.encodeproject.org/files/ENCFF563ATS/@@download/ENCFF563ATS.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF205BAR bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF232HND, ENCFF710NTS 5205295 ENCODE Processing Pipeline 0668bcb1f596df50e9193d8ba5c90e50 https://www.encodeproject.org/files/ENCFF205BAR/@@download/ENCFF205BAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF120BCE bigWig fold change over control ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HMX, ENCFF710NTS 528262664 ENCODE Processing Pipeline bd57e37df725a9844a84be7b226e6093 https://www.encodeproject.org/files/ENCFF120BCE/@@download/ENCFF120BCE.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF626MVT bed narrowPeak optimal idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF205BAR, ENCFF676HRI, ENCFF850MTK 276959 ENCODE Processing Pipeline 2431f6463d18398443482deaf2effc00 https://www.encodeproject.org/files/ENCFF626MVT/@@download/ENCFF626MVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF477JYV bigWig signal p-value ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF232HND, ENCFF375HMX, ENCFF710NTS 510895125 ENCODE Processing Pipeline b8d75dce9147e5420b96add39c525cdd https://www.encodeproject.org/files/ENCFF477JYV/@@download/ENCFF477JYV.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF823JUG bed narrowPeak conservative idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF205BAR, ENCFF676HRI, ENCFF850MTK 253500 ENCODE Processing Pipeline 857c0f6ad4a05f14a3198a73d5d69eb9 https://www.encodeproject.org/files/ENCFF823JUG/@@download/ENCFF823JUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF221KYS bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF850MTK 13379689 ENCODE Processing Pipeline 80685e3c133648af05c0354da8eca314 https://www.encodeproject.org/files/ENCFF221KYS/@@download/ENCFF221KYS.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF957DJB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF823JUG 471762 ENCODE Processing Pipeline bba8006d861bdc07eed8491ff6b07104 https://www.encodeproject.org/files/ENCFF957DJB/@@download/ENCFF957DJB.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF239EOW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF626MVT 504034 ENCODE Processing Pipeline 02f39dff490b03e233daf0c41539b671 https://www.encodeproject.org/files/ENCFF239EOW/@@download/ENCFF239EOW.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF543IVG bigWig signal p-value ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF719NDH 540003920 ENCODE Processing Pipeline cbd9c3cb1e52dd0079edb281017f9fb7 https://www.encodeproject.org/files/ENCFF543IVG/@@download/ENCFF543IVG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF745NRL bigWig signal p-value ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF188QGH, ENCFF719NDH 536219215 ENCODE Processing Pipeline 68964c95bbf577eab81b27dbc690f482 https://www.encodeproject.org/files/ENCFF745NRL/@@download/ENCFF745NRL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF852AMU bigWig signal p-value ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF188QGH 485686853 ENCODE Processing Pipeline ebca9769e12d49866959e947e3587171 https://www.encodeproject.org/files/ENCFF852AMU/@@download/ENCFF852AMU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF882MIL bigWig fold change over control ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF188QGH 431717581 ENCODE Processing Pipeline 75e4b87163a652f35aeac527e71fa098 https://www.encodeproject.org/files/ENCFF882MIL/@@download/ENCFF882MIL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF914ZVR bigWig fold change over control ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF719NDH 520783063 ENCODE Processing Pipeline 9090c2e12ac29129a55c7cd2f3d100a2 https://www.encodeproject.org/files/ENCFF914ZVR/@@download/ENCFF914ZVR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF957BZU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF868SWL 503459 ENCODE Processing Pipeline 4ee9593f10534bac3538cde4313e9b89 https://www.encodeproject.org/files/ENCFF957BZU/@@download/ENCFF957BZU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF394OPM bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF487WEO 13385300 ENCODE Processing Pipeline 3e0fb029603bdeea88784d016c596127 https://www.encodeproject.org/files/ENCFF394OPM/@@download/ENCFF394OPM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF400AUH bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF188QGH 5179889 ENCODE Processing Pipeline 64651123ac68cdda4ccd879a59b7a88c https://www.encodeproject.org/files/ENCFF400AUH/@@download/ENCFF400AUH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF992BIU bed narrowPeak conservative idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF400AUH, ENCFF417VTJ, ENCFF419RSJ, ENCFF487WEO 255392 ENCODE Processing Pipeline 4a6121d29f763e2669f6f26fd10cc0fc https://www.encodeproject.org/files/ENCFF992BIU/@@download/ENCFF992BIU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF562MWN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF992BIU 475619 ENCODE Processing Pipeline e7a579ec253377c2fe3f9b5f216d0832 https://www.encodeproject.org/files/ENCFF562MWN/@@download/ENCFF562MWN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF487WEO bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF188QGH, ENCFF719NDH 6159793 ENCODE Processing Pipeline 4165e7a04706d12b67cde4429c706821 https://www.encodeproject.org/files/ENCFF487WEO/@@download/ENCFF487WEO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF435DZW bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF400AUH 10985678 ENCODE Processing Pipeline 5122714be75e61bd91d902f24e2085a6 https://www.encodeproject.org/files/ENCFF435DZW/@@download/ENCFF435DZW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF026RZR bigBed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF417VTJ 11091863 ENCODE Processing Pipeline 02ac684d2dce1225f4716847539ae23f https://www.encodeproject.org/files/ENCFF026RZR/@@download/ENCFF026RZR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF805ZUL bigWig fold change over control ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF188QGH, ENCFF719NDH 807674200 ENCODE Processing Pipeline 67e68d7a2195c15738b04569458ee284 https://www.encodeproject.org/files/ENCFF805ZUL/@@download/ENCFF805ZUL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF417VTJ bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF719NDH 5148978 ENCODE Processing Pipeline b99fda23e3d932f7df6eca9baa7d036e https://www.encodeproject.org/files/ENCFF417VTJ/@@download/ENCFF417VTJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF868SWL bed narrowPeak optimal idr thresholded peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF400AUH, ENCFF417VTJ, ENCFF419RSJ, ENCFF487WEO 275587 ENCODE Processing Pipeline 36c7bcbb729dc172e1cf6fbe7620a435 https://www.encodeproject.org/files/ENCFF868SWL/@@download/ENCFF868SWL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF834GLZ bam unfiltered alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEJ, ENCFF807MUK 1284119654 ENCODE Processing Pipeline 2b8b596791e5a2b0bbdabb112b7c62a3 https://www.encodeproject.org/files/ENCFF834GLZ/@@download/ENCFF834GLZ.bam hg19 released low read length ENCFF257LBR bam unfiltered alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEC, ENCFF807MUK 1405980774 ENCODE Processing Pipeline f51f4e939f03afdb73b22d4fb7644945 https://www.encodeproject.org/files/ENCFF257LBR/@@download/ENCFF257LBR.bam hg19 released low read length ENCFF530GSV bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 526138552 ENCODE Processing Pipeline c6cfbbcc3349a0ab8ace0b30ad74eb42 https://www.encodeproject.org/files/ENCFF530GSV/@@download/ENCFF530GSV.bigWig hg19 released low read length ENCFF053WXX bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 505200355 ENCODE Processing Pipeline 5b8eee65970c6516a089d7eea7ea70d6 https://www.encodeproject.org/files/ENCFF053WXX/@@download/ENCFF053WXX.bigWig hg19 released low read length ENCFF251DTP bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 538627554 ENCODE Processing Pipeline 44ca5601883139abb1fda7d3580f6bdd https://www.encodeproject.org/files/ENCFF251DTP/@@download/ENCFF251DTP.bigWig hg19 released low read length ENCFF968IRL bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 1092335451 ENCODE Processing Pipeline 129ddf75ae9b32f2b865a9809133bd2a https://www.encodeproject.org/files/ENCFF968IRL/@@download/ENCFF968IRL.bigWig hg19 released low read length ENCFF166YOH bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 531324620 ENCODE Processing Pipeline 4d4514a2c5d8adf8981f51ecf1e06f1e https://www.encodeproject.org/files/ENCFF166YOH/@@download/ENCFF166YOH.bigWig hg19 released low read length ENCFF319KZQ bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 1108365931 ENCODE Processing Pipeline 010e8dff29ddadbb390162f6d25b5823 https://www.encodeproject.org/files/ENCFF319KZQ/@@download/ENCFF319KZQ.bigWig hg19 released low read length ENCFF903CMR bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 5463308 ENCODE Processing Pipeline 62a7c136c7f270aafa1a4fac94b275f7 https://www.encodeproject.org/files/ENCFF903CMR/@@download/ENCFF903CMR.bed.gz hg19 released low read length ENCFF093CQB bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF084ZRH 13515363 ENCODE Processing Pipeline c3f19463a13c286b24f00e740affa4dc https://www.encodeproject.org/files/ENCFF093CQB/@@download/ENCFF093CQB.bigBed hg19 released low read length ENCFF324USK bed narrowPeak conservative idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF084ZRH, ENCFF663ORW, ENCFF903CMR 111947 ENCODE Processing Pipeline df5de3d7fdaa782bc803d8636a810752 https://www.encodeproject.org/files/ENCFF324USK/@@download/ENCFF324USK.bed.gz hg19 released low read length ENCFF601DIL bigBed narrowPeak conservative idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF324USK 280887 ENCODE Processing Pipeline a5d8183beb727b8e1f04d809ac3afb04 https://www.encodeproject.org/files/ENCFF601DIL/@@download/ENCFF601DIL.bigBed hg19 released low read length ENCFF663ORW bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 5124788 ENCODE Processing Pipeline 8684d01437d6b6e47679a749aacccb94 https://www.encodeproject.org/files/ENCFF663ORW/@@download/ENCFF663ORW.bed.gz hg19 released low read length ENCFF084ZRH bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 6582440 ENCODE Processing Pipeline 4bc00609b7376f5ca21105ebd930e822 https://www.encodeproject.org/files/ENCFF084ZRH/@@download/ENCFF084ZRH.bed.gz hg19 released low read length ENCFF698QPL bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF663ORW 11119862 ENCODE Processing Pipeline 63d8f1c41ab180ee2660cf09300616d4 https://www.encodeproject.org/files/ENCFF698QPL/@@download/ENCFF698QPL.bigBed hg19 released low read length ENCFF724XME bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF903CMR 13353811 ENCODE Processing Pipeline 8ecc2ae332db031116b01a2959a575ea https://www.encodeproject.org/files/ENCFF724XME/@@download/ENCFF724XME.bigBed hg19 released low read length ENCFF384YDT bed narrowPeak optimal idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF084ZRH, ENCFF663ORW, ENCFF903CMR 152742 ENCODE Processing Pipeline c35e488a7197f89d865f37f8aa5f4343 https://www.encodeproject.org/files/ENCFF384YDT/@@download/ENCFF384YDT.bed.gz hg19 released low read length ENCFF238AQH bigBed narrowPeak optimal idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF384YDT 341211 ENCODE Processing Pipeline fac5ca207d3a6043261b7daaebcc7d33 https://www.encodeproject.org/files/ENCFF238AQH/@@download/ENCFF238AQH.bigBed hg19 released low read length ENCFF002EEC fastq reads ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 1151961310 Michael Snyder, Stanford a6c5b80b5505b4907fd352e673b3102e SRA:SRR5111503 https://www.encodeproject.org/files/ENCFF002EEC/@@download/ENCFF002EEC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length ENCFF002EEJ fastq reads ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1050137304 Michael Snyder, Stanford 0fdb16a7aa7ca00b2a1b4fd8c20a4bea SRA:SRR5111502 https://www.encodeproject.org/files/ENCFF002EEJ/@@download/ENCFF002EEJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length ENCFF147VCN bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEJ, ENCFF807MUK 907232879 ENCODE Processing Pipeline 03504027d6d2aec11a29cd4df610471d https://www.encodeproject.org/files/ENCFF147VCN/@@download/ENCFF147VCN.bam hg19 released low read length ENCFF852RLW bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEC, ENCFF807MUK 1007981529 ENCODE Processing Pipeline 12e21b7f9d23c095f545dd9b734740f2 https://www.encodeproject.org/files/ENCFF852RLW/@@download/ENCFF852RLW.bam hg19 released low read length ENCFF135ZSD bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 533764573 ENCODE Processing Pipeline 42469c710ba29865d6225048bc48638a https://www.encodeproject.org/files/ENCFF135ZSD/@@download/ENCFF135ZSD.bigWig hg19 archived low read length ENCFF393MAO bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 538902835 ENCODE Processing Pipeline dba3076f78674bfe058fef29b5620b5f https://www.encodeproject.org/files/ENCFF393MAO/@@download/ENCFF393MAO.bigWig hg19 archived low read length ENCFF412ARP bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 1089142441 ENCODE Processing Pipeline 728e19387e27b47eb0731e091426cbb1 https://www.encodeproject.org/files/ENCFF412ARP/@@download/ENCFF412ARP.bigWig hg19 archived low read length ENCFF983XNF bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 518450444 ENCODE Processing Pipeline 08cbfbc8734f4ee3010d34dac5901567 https://www.encodeproject.org/files/ENCFF983XNF/@@download/ENCFF983XNF.bigWig hg19 archived low read length ENCFF344JYX bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 536487921 ENCODE Processing Pipeline c4a77c06c07294a3805dc7097b7190a6 https://www.encodeproject.org/files/ENCFF344JYX/@@download/ENCFF344JYX.bigWig hg19 archived low read length ENCFF982NLI bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 1111128511 ENCODE Processing Pipeline 43b37f68471d32a64c21d757765abae5 https://www.encodeproject.org/files/ENCFF982NLI/@@download/ENCFF982NLI.bigWig hg19 archived low read length ENCFF063GMG bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 6729858 ENCODE Processing Pipeline a9f8443f4492d3091639f0cd7a56157d https://www.encodeproject.org/files/ENCFF063GMG/@@download/ENCFF063GMG.bed.gz hg19 archived low read length ENCFF135VWG bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 5660342 ENCODE Processing Pipeline b7a0aac41ac7f624fc8866dbfd8e2129 https://www.encodeproject.org/files/ENCFF135VWG/@@download/ENCFF135VWG.bed.gz hg19 archived low read length ENCFF770GWM bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 5247189 ENCODE Processing Pipeline ae86b2319905c3bbce4a66fa7affa0a3 https://www.encodeproject.org/files/ENCFF770GWM/@@download/ENCFF770GWM.bed.gz hg19 archived low read length ENCFF536ILS bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF770GWM 11177698 ENCODE Processing Pipeline dc97e62a0c2b4189a68307ed3a54ca9f https://www.encodeproject.org/files/ENCFF536ILS/@@download/ENCFF536ILS.bigBed hg19 archived low read length ENCFF330GBX bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF135VWG 13421883 ENCODE Processing Pipeline 9af922c5c220bb7be78b1d65650224f4 https://www.encodeproject.org/files/ENCFF330GBX/@@download/ENCFF330GBX.bigBed hg19 archived low read length ENCFF522ODG bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF063GMG 13521813 ENCODE Processing Pipeline 40ce31e04b33db2a7ed28f26e05698b0 https://www.encodeproject.org/files/ENCFF522ODG/@@download/ENCFF522ODG.bigBed hg19 archived low read length ENCFF463OMQ bam unfiltered alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEC, ENCFF643CGH 1412020822 ENCODE Processing Pipeline 89d5d0ab2d6d8be214cf44d16745d2d1 https://www.encodeproject.org/files/ENCFF463OMQ/@@download/ENCFF463OMQ.bam GRCh38 released low read length ENCFF826PAN bam unfiltered alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEJ, ENCFF643CGH 1289602835 ENCODE Processing Pipeline 13cc3d159d00ab9c4029c64b34c77d5b https://www.encodeproject.org/files/ENCFF826PAN/@@download/ENCFF826PAN.bam GRCh38 released low read length ENCFF178EJY bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEJ, ENCFF643CGH 906593354 ENCODE Processing Pipeline d8aa561cc4b668a1147ae8572512de72 https://www.encodeproject.org/files/ENCFF178EJY/@@download/ENCFF178EJY.bam GRCh38 released low read length ENCFF057KBN bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEC, ENCFF643CGH 1007216977 ENCODE Processing Pipeline c7707a38aa34856df9e1580183e4c5de https://www.encodeproject.org/files/ENCFF057KBN/@@download/ENCFF057KBN.bam GRCh38 released low read length ENCFF167JEV bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF178EJY 530599910 ENCODE Processing Pipeline fe16161332ffa55c67f865e8c181dccb https://www.encodeproject.org/files/ENCFF167JEV/@@download/ENCFF167JEV.bigWig GRCh38 released low read length ENCFF513NLG bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF057KBN, ENCFF577FNG 616321813 ENCODE Processing Pipeline 162c143c609465086b67d3728baa789c https://www.encodeproject.org/files/ENCFF513NLG/@@download/ENCFF513NLG.bigWig GRCh38 released low read length ENCFF123RXA bigWig signal p-value ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF057KBN, ENCFF156FED, ENCFF178EJY, ENCFF577FNG 951074846 ENCODE Processing Pipeline f07a186d5c845a27b6cc1b89abf8dc79 https://www.encodeproject.org/files/ENCFF123RXA/@@download/ENCFF123RXA.bigWig GRCh38 released low read length ENCFF201SQA bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF178EJY 501313359 ENCODE Processing Pipeline 60cd9da4470b2269cde3d36136ac8bcc https://www.encodeproject.org/files/ENCFF201SQA/@@download/ENCFF201SQA.bigWig GRCh38 released low read length ENCFF809YCV bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF057KBN, ENCFF577FNG 529461363 ENCODE Processing Pipeline 6e83bb59d1a27059444b84118206ea30 https://www.encodeproject.org/files/ENCFF809YCV/@@download/ENCFF809YCV.bigWig GRCh38 released low read length ENCFF887HOR bigWig fold change over control ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF057KBN, ENCFF156FED, ENCFF178EJY, ENCFF577FNG 1091898518 ENCODE Processing Pipeline 38b642c089fdf7ad2c0684a518bd5dc7 https://www.encodeproject.org/files/ENCFF887HOR/@@download/ENCFF887HOR.bigWig GRCh38 released low read length ENCFF344HRG bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF178EJY 5121643 ENCODE Processing Pipeline 208f76b1214d2c8bc120a6addc214a9b https://www.encodeproject.org/files/ENCFF344HRG/@@download/ENCFF344HRG.bed.gz GRCh38 released low read length ENCFF057BVY bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF344HRG 11121835 ENCODE Processing Pipeline 304bc20b66a8487f655052e35ba0a071 https://www.encodeproject.org/files/ENCFF057BVY/@@download/ENCFF057BVY.bigBed GRCh38 released low read length ENCFF886EVL bed narrowPeak optimal idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF344HRG, ENCFF419RSJ, ENCFF785QCU, ENCFF934EYD 162552 ENCODE Processing Pipeline d9a2d56a4d106637d515cedb4176fae9 https://www.encodeproject.org/files/ENCFF886EVL/@@download/ENCFF886EVL.bed.gz GRCh38 released low read length ENCFF785QCU bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF057KBN, ENCFF577FNG 5470469 ENCODE Processing Pipeline f56050b119170957b4278817f4a37ea9 https://www.encodeproject.org/files/ENCFF785QCU/@@download/ENCFF785QCU.bed.gz GRCh38 released low read length ENCFF644KFP bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF934EYD 13537708 ENCODE Processing Pipeline 22bbc9035ca6b4324a464cc2e027a4ca https://www.encodeproject.org/files/ENCFF644KFP/@@download/ENCFF644KFP.bigBed GRCh38 released low read length ENCFF934EYD bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF057KBN, ENCFF156FED, ENCFF178EJY, ENCFF577FNG 6596165 ENCODE Processing Pipeline 4426ab492f93716962efe1b69d6e2707 https://www.encodeproject.org/files/ENCFF934EYD/@@download/ENCFF934EYD.bed.gz GRCh38 released low read length ENCFF340GRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF886EVL 356129 ENCODE Processing Pipeline 4ec0a1500d0a8365195f47646a5ab41f https://www.encodeproject.org/files/ENCFF340GRQ/@@download/ENCFF340GRQ.bigBed GRCh38 released low read length ENCFF403GZC bed narrowPeak conservative idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF344HRG, ENCFF419RSJ, ENCFF785QCU, ENCFF934EYD 117587 ENCODE Processing Pipeline 810a3ceaf02c4b0befba613f5be4f648 https://www.encodeproject.org/files/ENCFF403GZC/@@download/ENCFF403GZC.bed.gz GRCh38 released low read length ENCFF824LTN bigBed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 ENCFF785QCU 13370738 ENCODE Processing Pipeline b49044c1e9442e21d74c236e465f2ec0 https://www.encodeproject.org/files/ENCFF824LTN/@@download/ENCFF824LTN.bigBed GRCh38 released low read length ENCFF795DPX bigBed narrowPeak conservative idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF403GZC 289143 ENCODE Processing Pipeline 5e4756816e1a79cb560add7377c13a6c https://www.encodeproject.org/files/ENCFF795DPX/@@download/ENCFF795DPX.bigBed GRCh38 released low read length ENCFF629ZSD bed narrowPeak conservative idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF063GMG, ENCFF135VWG, ENCFF770GWM 98680 ENCODE Processing Pipeline 8d60e8b213fe10958274f490e0cfe048 https://www.encodeproject.org/files/ENCFF629ZSD/@@download/ENCFF629ZSD.bed.gz hg19 archived low read length ENCFF356VXM bigBed narrowPeak optimal idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF231TGQ 252168 ENCODE Processing Pipeline d4665d899e1217c9e33141348b270b5e https://www.encodeproject.org/files/ENCFF356VXM/@@download/ENCFF356VXM.bigBed hg19 archived low read length ENCFF231TGQ bed narrowPeak optimal idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF063GMG, ENCFF135VWG, ENCFF770GWM 131926 ENCODE Processing Pipeline 18f3a5f97cca0b5c798f4d6623c542f8 https://www.encodeproject.org/files/ENCFF231TGQ/@@download/ENCFF231TGQ.bed.gz hg19 archived low read length ENCFF576LYW bigBed narrowPeak conservative idr thresholded peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF629ZSD 211442 ENCODE Processing Pipeline 00fa7e5c5241ae37dcfe40190dd214c1 https://www.encodeproject.org/files/ENCFF576LYW/@@download/ENCFF576LYW.bigBed hg19 archived low read length ENCFF000OTK bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OTS 714087449 Richard Myers, HAIB 0cd5832143e8b88d62c4957056a4aa25 https://www.encodeproject.org/files/ENCFF000OTK/@@download/ENCFF000OTK.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OTL bigBed broadPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCK 516163 Richard Myers, HAIB b17e0946b6831444d7d33503d769f156 https://www.encodeproject.org/files/ENCFF000OTL/@@download/ENCFF000OTL.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OTM bigBed broadPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCL 507179 Richard Myers, HAIB fc4caad73f31a76d13331e64c246c166 https://www.encodeproject.org/files/ENCFF000OTM/@@download/ENCFF000OTM.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OTN bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OTW 751687723 Richard Myers, HAIB 4e9bc41baa164d5ecb156c801f21ad6d https://www.encodeproject.org/files/ENCFF000OTN/@@download/ENCFF000OTN.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OTP bigWig raw signal ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 10810512 Richard Myers, HAIB 17b4c7af467dea946b3dd276995e8aa8 https://www.encodeproject.org/files/ENCFF000OTP/@@download/ENCFF000OTP.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OTQ bigWig raw signal ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 11024841 Richard Myers, HAIB 459a6c9c3395ff43a1e23a6130d967e4 https://www.encodeproject.org/files/ENCFF000OTQ/@@download/ENCFF000OTQ.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OTS fastq reads ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 695506308 Richard Myers, HAIB bdb0e3d8d247b0403ea2ec6af3654588 https://www.encodeproject.org/files/ENCFF000OTS/@@download/ENCFF000OTS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, low read depth biological replicates with identical biosample ENCFF000OTW fastq reads ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 798961890 Richard Myers, HAIB 563c5a3e59c4f17ce5022a96f44b81fd https://www.encodeproject.org/files/ENCFF000OTW/@@download/ENCFF000OTW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, low read depth biological replicates with identical biosample ENCFF001UCK bed broadPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 286693 Richard Myers, HAIB b69b0a6c10eb5b72d440578292de9923 https://www.encodeproject.org/files/ENCFF001UCK/@@download/ENCFF001UCK.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UCL bed broadPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 263042 Richard Myers, HAIB 46fedd7ca703a31f50b7412166da7940 https://www.encodeproject.org/files/ENCFF001UCL/@@download/ENCFF001UCL.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJK bed narrowPeak optimal idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 294919 ENCODE Consortium Analysis Working Group aab140e1c863b7cec5f3f96c7cb939e2 https://www.encodeproject.org/files/ENCFF002CJK/@@download/ENCFF002CJK.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF047OMP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJK 588335 ENCODE Consortium b80dda0bf5e2d646fa934258c317c059 https://www.encodeproject.org/files/ENCFF047OMP/@@download/ENCFF047OMP.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF477CHR bam unfiltered alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTW, ENCFF643CGH 1039458544 ENCODE Processing Pipeline 784756dcd0bc162ccb58095a18955405 https://www.encodeproject.org/files/ENCFF477CHR/@@download/ENCFF477CHR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF346XVM bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTW, ENCFF643CGH 630793208 ENCODE Processing Pipeline 841d80ec0aed77f6bd9a3cefbea0b40f 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replicates with identical biosample ENCFF271AEZ bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTS, ENCFF807MUK 603170242 ENCODE Processing Pipeline 56e941c40e60faefb4e3164e88a2bcc1 https://www.encodeproject.org/files/ENCFF271AEZ/@@download/ENCFF271AEZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF028EPQ bam unfiltered alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTS, ENCFF807MUK 918303029 ENCODE Processing Pipeline 92fdbc4200bb185fbe3e04884d39e923 https://www.encodeproject.org/files/ENCFF028EPQ/@@download/ENCFF028EPQ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF668ZBZ bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTW, ENCFF807MUK 631163376 ENCODE Processing Pipeline 0430634ff39d897af72cf845b3c04ce8 https://www.encodeproject.org/files/ENCFF668ZBZ/@@download/ENCFF668ZBZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF295GDG bam unfiltered alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTW, ENCFF807MUK 1036196972 ENCODE Processing Pipeline fbf3a9c34be988f9e4643bbe2871a78a https://www.encodeproject.org/files/ENCFF295GDG/@@download/ENCFF295GDG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF571TTQ bigWig signal p-value ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346XVM, ENCFF948LKH 387896097 ENCODE Processing Pipeline 95aece34db238cb51c53a61e24587b87 https://www.encodeproject.org/files/ENCFF571TTQ/@@download/ENCFF571TTQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF804VZR bigWig signal p-value ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF949TUZ 368165050 ENCODE Processing Pipeline 60b53d516da563272998bfd3c63e6709 https://www.encodeproject.org/files/ENCFF804VZR/@@download/ENCFF804VZR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF286DIH bigWig fold change over control ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346XVM, ENCFF948LKH 302587318 ENCODE Processing Pipeline bb145ef4d0288bc064872ed00c3f6fa5 https://www.encodeproject.org/files/ENCFF286DIH/@@download/ENCFF286DIH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF703VUT bigWig signal p-value ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346XVM, ENCFF948LKH, ENCFF949TUZ 529159465 ENCODE Processing Pipeline a1f49c53740723d84a6b6ad71e07dd06 https://www.encodeproject.org/files/ENCFF703VUT/@@download/ENCFF703VUT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF861UXW bigWig fold change over control ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF949TUZ 316085380 ENCODE Processing Pipeline 8e04efc12ff6473e8980189d67ea12bc https://www.encodeproject.org/files/ENCFF861UXW/@@download/ENCFF861UXW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF256MVQ bigWig fold change over control ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346XVM, ENCFF948LKH, ENCFF949TUZ 527411072 ENCODE Processing Pipeline c00f4bbc95a4da19173843eabeeef31e https://www.encodeproject.org/files/ENCFF256MVQ/@@download/ENCFF256MVQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF804LRQ bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF949TUZ 4780365 ENCODE Processing Pipeline 5cdf6cb0a45fdebb2f4e734ca523aa0e https://www.encodeproject.org/files/ENCFF804LRQ/@@download/ENCFF804LRQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF695XRW bed narrowPeak conservative idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF539PMO, ENCFF692RHW, ENCFF804LRQ 334552 ENCODE Processing Pipeline 24b875c51468120d5d7fe7211ef0aa4c https://www.encodeproject.org/files/ENCFF695XRW/@@download/ENCFF695XRW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF539PMO bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346XVM, ENCFF948LKH 4610991 ENCODE Processing Pipeline 1b475f8d5c4981c3bf9c17e004ee8bce https://www.encodeproject.org/files/ENCFF539PMO/@@download/ENCFF539PMO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF891KNU bigBed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF804LRQ 10748885 ENCODE Processing Pipeline 7fe5440334893adc05170693aca67793 https://www.encodeproject.org/files/ENCFF891KNU/@@download/ENCFF891KNU.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF133LKP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF500JFI 672902 ENCODE Processing Pipeline 8a38401cc312b1715431bc575d0fd858 https://www.encodeproject.org/files/ENCFF133LKP/@@download/ENCFF133LKP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF659VMZ bigBed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF692RHW 13533777 ENCODE Processing Pipeline 1c38bf8b0f596cf54b000753b111339d https://www.encodeproject.org/files/ENCFF659VMZ/@@download/ENCFF659VMZ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF366UVW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF695XRW 630832 ENCODE Processing Pipeline d398b7eb0b623603649a52f2fe9b77fd https://www.encodeproject.org/files/ENCFF366UVW/@@download/ENCFF366UVW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF692RHW bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346XVM, ENCFF948LKH, ENCFF949TUZ 5636270 ENCODE Processing Pipeline a49651c20459382b05c26deb22cc7aaf https://www.encodeproject.org/files/ENCFF692RHW/@@download/ENCFF692RHW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF450TPR bigBed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF539PMO 10561009 ENCODE Processing Pipeline c02941366a31b8a60840579d402a007a https://www.encodeproject.org/files/ENCFF450TPR/@@download/ENCFF450TPR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF500JFI bed narrowPeak optimal idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF539PMO, ENCFF692RHW, ENCFF804LRQ 364303 ENCODE Processing Pipeline 90cc3b9e4c87a99cafe7098f1a5b1843 https://www.encodeproject.org/files/ENCFF500JFI/@@download/ENCFF500JFI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF340GRK bigWig fold change over control ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF271AEZ, ENCFF356DXM 316324144 ENCODE Processing Pipeline fc8fbf48e201e589c4827db734804aab https://www.encodeproject.org/files/ENCFF340GRK/@@download/ENCFF340GRK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF915WAD bigWig signal p-value ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF271AEZ, ENCFF356DXM 368739066 ENCODE Processing Pipeline 08705713aef069b1b3152ac8b57b3e88 https://www.encodeproject.org/files/ENCFF915WAD/@@download/ENCFF915WAD.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF067ZMW bigWig fold change over control ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF668ZBZ 304481530 ENCODE Processing Pipeline e7ed58de97783ce7ed792c5c22f7d318 https://www.encodeproject.org/files/ENCFF067ZMW/@@download/ENCFF067ZMW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF433IIE bigWig fold change over control ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271AEZ, ENCFF356DXM, ENCFF668ZBZ 522710059 ENCODE Processing Pipeline 17b42271c56cce350e3fa25f888531f1 https://www.encodeproject.org/files/ENCFF433IIE/@@download/ENCFF433IIE.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF755IEI bigWig signal p-value ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF668ZBZ 416369196 ENCODE Processing Pipeline dbde32f61b270965d90e2f06ba66ad7e https://www.encodeproject.org/files/ENCFF755IEI/@@download/ENCFF755IEI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF515POF bigWig signal p-value ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271AEZ, ENCFF356DXM, ENCFF668ZBZ 526654564 ENCODE Processing Pipeline 42c48dc17bcb18d0e4fc34badb7407a6 https://www.encodeproject.org/files/ENCFF515POF/@@download/ENCFF515POF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF740TPH bigBed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF721YVP 13530289 ENCODE Processing Pipeline ebd3bc7c0cbea3e7481a80fb78e6d2c0 https://www.encodeproject.org/files/ENCFF740TPH/@@download/ENCFF740TPH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF364OUN bigBed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF668CZT 10763465 ENCODE Processing Pipeline ad33cae947126fef1835eaca6d722708 https://www.encodeproject.org/files/ENCFF364OUN/@@download/ENCFF364OUN.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF721YVP bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271AEZ, ENCFF356DXM, ENCFF668ZBZ 5643108 ENCODE Processing Pipeline ab6f172c9addc7e05aceac6b2cff2506 https://www.encodeproject.org/files/ENCFF721YVP/@@download/ENCFF721YVP.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF976GFP bed narrowPeak conservative idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF384GPX, ENCFF668CZT, ENCFF721YVP 332490 ENCODE Processing Pipeline 3a1941df28e73ff19feeb9b66eb67f3c https://www.encodeproject.org/files/ENCFF976GFP/@@download/ENCFF976GFP.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF384GPX bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF668ZBZ 4583842 ENCODE Processing Pipeline 66240a4022f81c750f771982b351a2a8 https://www.encodeproject.org/files/ENCFF384GPX/@@download/ENCFF384GPX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF317TBZ bed narrowPeak optimal idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF384GPX, ENCFF668CZT, ENCFF721YVP 358846 ENCODE Processing Pipeline 153f620eadc2ac2a8cf56b12fe87a91e https://www.encodeproject.org/files/ENCFF317TBZ/@@download/ENCFF317TBZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF668CZT bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF271AEZ, ENCFF356DXM 4827069 ENCODE Processing Pipeline bbc7011954414f04decf521a5b6dac20 https://www.encodeproject.org/files/ENCFF668CZT/@@download/ENCFF668CZT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF491VSU bigBed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF384GPX 10534859 ENCODE Processing Pipeline 8139478856c2c49dd327f1ad41878e45 https://www.encodeproject.org/files/ENCFF491VSU/@@download/ENCFF491VSU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF622PJQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF976GFP 625823 ENCODE Processing Pipeline 172172412172d1e156661c744807bbb7 https://www.encodeproject.org/files/ENCFF622PJQ/@@download/ENCFF622PJQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF931HUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF317TBZ 663836 ENCODE Processing Pipeline e0c74a3dc125c3a7a9ac36f17e676ead https://www.encodeproject.org/files/ENCFF931HUX/@@download/ENCFF931HUX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF872XMB bam unfiltered alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 100 ENCFF218VUS, ENCFF807MUK, ENCFF890WRL 4293842442 ENCODE Processing Pipeline 1ea2e865c750618e4011c5da192480c3 https://www.encodeproject.org/files/ENCFF872XMB/@@download/ENCFF872XMB.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF856LDZ bam unfiltered alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 100 ENCFF281JRR, ENCFF538IMN, ENCFF807MUK 5915933763 ENCODE Processing Pipeline c06d362f5b7f2829786185f56aa10ae0 https://www.encodeproject.org/files/ENCFF856LDZ/@@download/ENCFF856LDZ.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF890WRL fastq reads ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF218VUS 1995332199 Michael Snyder, Stanford e5f8947176ca40d8c65f85a76d56a987 SRA:SRR5111948 https://www.encodeproject.org/files/ENCFF890WRL/@@download/ENCFF890WRL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF538IMN fastq reads ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF281JRR 2704279396 Michael Snyder, Stanford e7700fe265793ed95b79ee44b8659716 SRA:SRR5111947 https://www.encodeproject.org/files/ENCFF538IMN/@@download/ENCFF538IMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF218VUS fastq reads ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF890WRL 1926887620 Michael Snyder, Stanford fae57b1ceacce88dcbebb74bef752e22 SRA:SRR5111948 https://www.encodeproject.org/files/ENCFF218VUS/@@download/ENCFF218VUS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF281JRR fastq reads ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF538IMN 2813327530 Michael Snyder, Stanford 0f26e5a404cd249c5ea17b08ec2a95dd SRA:SRR5111947 https://www.encodeproject.org/files/ENCFF281JRR/@@download/ENCFF281JRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF473GDU bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 100 ENCFF218VUS, ENCFF807MUK, ENCFF890WRL 3577773016 ENCODE Processing Pipeline 726306d79db0b32ea8d444adb0353649 https://www.encodeproject.org/files/ENCFF473GDU/@@download/ENCFF473GDU.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF607LWB bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 100 ENCFF281JRR, ENCFF538IMN, ENCFF807MUK 5107935295 ENCODE Processing Pipeline 02355c46d4860dabe03f2f9275da922c https://www.encodeproject.org/files/ENCFF607LWB/@@download/ENCFF607LWB.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF776RWU bigWig signal p-value ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF581ZJL, ENCFF607LWB 1340393333 ENCODE Processing Pipeline eac79381a2aabba5e279d0cd073aeffb https://www.encodeproject.org/files/ENCFF776RWU/@@download/ENCFF776RWU.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF326IDF bigWig signal p-value ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF473GDU 1079583632 ENCODE Processing Pipeline a524c2aee4d14655c749981deaa1e6bd https://www.encodeproject.org/files/ENCFF326IDF/@@download/ENCFF326IDF.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF087PSY bigWig signal p-value ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF473GDU, ENCFF581ZJL, ENCFF607LWB 1910249838 ENCODE Processing Pipeline 6a54dea6443d06f0715e0246cf954792 https://www.encodeproject.org/files/ENCFF087PSY/@@download/ENCFF087PSY.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF030BWV bigWig fold change over control ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF581ZJL, ENCFF607LWB 1305053000 ENCODE Processing Pipeline d84c4e25f3490638a5edc209fc4ea896 https://www.encodeproject.org/files/ENCFF030BWV/@@download/ENCFF030BWV.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF096HOG bigWig fold change over control ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF473GDU 1032580570 ENCODE Processing Pipeline aa550c9255fc56973772e691c1eef747 https://www.encodeproject.org/files/ENCFF096HOG/@@download/ENCFF096HOG.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF131WXL bigWig fold change over control ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF473GDU, ENCFF581ZJL, ENCFF607LWB 2131985367 ENCODE Processing Pipeline b4c74b02c32649f8955d89db8e48fa12 https://www.encodeproject.org/files/ENCFF131WXL/@@download/ENCFF131WXL.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF839WLX bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF581ZJL, ENCFF607LWB 7182624 ENCODE Processing Pipeline 7cdf0e768ab4a89b9f8bb35087b49d87 https://www.encodeproject.org/files/ENCFF839WLX/@@download/ENCFF839WLX.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF622WDZ bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF473GDU 7079040 ENCODE Processing Pipeline 817b2387e09c000d8bee229f9933df2a https://www.encodeproject.org/files/ENCFF622WDZ/@@download/ENCFF622WDZ.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF701XIM bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF473GDU, ENCFF581ZJL, ENCFF607LWB 7237550 ENCODE Processing Pipeline fba6edeb7e7d91994bddf1b275cf4b58 https://www.encodeproject.org/files/ENCFF701XIM/@@download/ENCFF701XIM.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF477IDQ bigBed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF839WLX 12841307 ENCODE Processing Pipeline 3e5d813f0ace7b65fb9b2779901f3e31 https://www.encodeproject.org/files/ENCFF477IDQ/@@download/ENCFF477IDQ.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF445PAZ bigBed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF622WDZ 13031733 ENCODE Processing Pipeline 120d6bcab397b6561240db6bc5190166 https://www.encodeproject.org/files/ENCFF445PAZ/@@download/ENCFF445PAZ.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF315CKV bigBed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF701XIM 12781543 ENCODE Processing Pipeline 777d015a566f25aa526722046e655ac9 https://www.encodeproject.org/files/ENCFF315CKV/@@download/ENCFF315CKV.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF066UWW bigBed narrowPeak conservative idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF580ETD 278084 ENCODE Processing Pipeline 5fb38ded5e5c8c5c7c71ace2041e90a7 https://www.encodeproject.org/files/ENCFF066UWW/@@download/ENCFF066UWW.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched status, mismatched file status ENCFF171AYO bed narrowPeak conservative idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF622WDZ, ENCFF701XIM, ENCFF839WLX 113454 ENCODE Processing Pipeline fb45c2e070852523b4f8759e606b924f https://www.encodeproject.org/files/ENCFF171AYO/@@download/ENCFF171AYO.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF013MAI bigBed narrowPeak optimal idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF053XOF 1095409 ENCODE Processing Pipeline 6cb9e53abd66010ff2a0f54cc5cd4541 https://www.encodeproject.org/files/ENCFF013MAI/@@download/ENCFF013MAI.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched status, mismatched file status ENCFF197YHU bed narrowPeak optimal idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF622WDZ, ENCFF701XIM, ENCFF839WLX 578376 ENCODE Processing Pipeline 23f1dd4b6ba4d0826d8a51cdd0b8657d https://www.encodeproject.org/files/ENCFF197YHU/@@download/ENCFF197YHU.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF773FLB bam unfiltered alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 100 ENCFF218VUS, ENCFF643CGH, ENCFF890WRL 4298391128 ENCODE Processing Pipeline b3a8b0fdddbd1fb983d8ea0c039c8c6d https://www.encodeproject.org/files/ENCFF773FLB/@@download/ENCFF773FLB.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF228IMW bam unfiltered alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 100 ENCFF281JRR, ENCFF538IMN, ENCFF643CGH 5920571050 ENCODE Processing Pipeline 1afe30fb5650fead12ac50df86b11b5d https://www.encodeproject.org/files/ENCFF228IMW/@@download/ENCFF228IMW.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF157HYJ bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 100 ENCFF218VUS, ENCFF643CGH, ENCFF890WRL 3580303278 ENCODE Processing Pipeline c3bca805fbd05456c81a6019348e28f5 https://www.encodeproject.org/files/ENCFF157HYJ/@@download/ENCFF157HYJ.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF606LUD bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 100 ENCFF281JRR, ENCFF538IMN, ENCFF643CGH 5109623043 ENCODE Processing Pipeline ccba4e172c8211289268fdd1acdb0b5a https://www.encodeproject.org/files/ENCFF606LUD/@@download/ENCFF606LUD.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF042NAK bigWig signal p-value ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF606LUD, ENCFF910IKB 1236477244 ENCODE Processing Pipeline 72deddaba69e085538ab075c6aa3e7b0 https://www.encodeproject.org/files/ENCFF042NAK/@@download/ENCFF042NAK.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF620IES bigWig signal p-value ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF157HYJ, ENCFF227IZS 999572180 ENCODE Processing Pipeline 6ccb5c61f1b1886e88cf8905e793d743 https://www.encodeproject.org/files/ENCFF620IES/@@download/ENCFF620IES.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF532LRF bigWig signal p-value ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF157HYJ, ENCFF227IZS, ENCFF606LUD, ENCFF910IKB 1815351441 ENCODE Processing Pipeline 031791f5c2010889407a963f580f2255 https://www.encodeproject.org/files/ENCFF532LRF/@@download/ENCFF532LRF.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF359JOO bigWig fold change over control ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF606LUD, ENCFF910IKB 1308747652 ENCODE Processing Pipeline 7c032eb0d84ffe97f7719582d6770c49 https://www.encodeproject.org/files/ENCFF359JOO/@@download/ENCFF359JOO.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF778MRS bigWig fold change over control ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF157HYJ, ENCFF227IZS 1034000680 ENCODE Processing Pipeline b48dacb563d0e459e83c292129bf65ab https://www.encodeproject.org/files/ENCFF778MRS/@@download/ENCFF778MRS.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF745GLK bigWig fold change over control ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF157HYJ, ENCFF227IZS, ENCFF606LUD, ENCFF910IKB 2088094113 ENCODE Processing Pipeline 0dd75d028a0a7560c58a5261f0fdc989 https://www.encodeproject.org/files/ENCFF745GLK/@@download/ENCFF745GLK.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF222FIP bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF606LUD, ENCFF910IKB 7141425 ENCODE Processing Pipeline da265fd2a97bacb94e50ce735073ae87 https://www.encodeproject.org/files/ENCFF222FIP/@@download/ENCFF222FIP.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF572UYY bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF157HYJ, ENCFF227IZS 6950714 ENCODE Processing Pipeline 0d87bbf3d5056b5b4b865ac94e18bb79 https://www.encodeproject.org/files/ENCFF572UYY/@@download/ENCFF572UYY.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF968DGA bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF157HYJ, ENCFF227IZS, ENCFF606LUD, ENCFF910IKB 7242349 ENCODE Processing Pipeline e89d7e0e4007cbd4dc79307de27d8ffd https://www.encodeproject.org/files/ENCFF968DGA/@@download/ENCFF968DGA.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF152MDX bigBed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF222FIP 12837542 ENCODE Processing Pipeline 0aaaf2b66e20e79a2a68965a7ec649f2 https://www.encodeproject.org/files/ENCFF152MDX/@@download/ENCFF152MDX.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF572RYZ bigBed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF572UYY 12964889 ENCODE Processing Pipeline 2cc93bc5dd3ae31d43301308b3c66cdb https://www.encodeproject.org/files/ENCFF572RYZ/@@download/ENCFF572RYZ.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF075XUY bigBed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF968DGA 12791433 ENCODE Processing Pipeline e979fdc06f3ff604a7444e8918971e52 https://www.encodeproject.org/files/ENCFF075XUY/@@download/ENCFF075XUY.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF300RMI bed narrowPeak conservative idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF222FIP, ENCFF419RSJ, ENCFF572UYY, ENCFF968DGA 110231 ENCODE Processing Pipeline 137c77d7e8efb2d6eda11897d6002c90 https://www.encodeproject.org/files/ENCFF300RMI/@@download/ENCFF300RMI.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF386KCW bigBed narrowPeak conservative idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF300RMI 273944 ENCODE Processing Pipeline 385cddd98d1e2b4c16b8a59d3d04e2a0 https://www.encodeproject.org/files/ENCFF386KCW/@@download/ENCFF386KCW.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF361RWX bed narrowPeak optimal idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF222FIP, ENCFF419RSJ, ENCFF572UYY, ENCFF968DGA 465677 ENCODE Processing Pipeline b1f87d1b831be06b49195b578bc64bbc https://www.encodeproject.org/files/ENCFF361RWX/@@download/ENCFF361RWX.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF517ZLV bigBed narrowPeak optimal idr thresholded peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF361RWX 937027 ENCODE Processing Pipeline 7beb2e0b205e1ad215f6854be4c53f93 https://www.encodeproject.org/files/ENCFF517ZLV/@@download/ENCFF517ZLV.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF002EWZ fastq reads ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 1 36 single-ended 950902691 Michael Snyder, Stanford ca3b90bd8c29e49f558cdeab5a9d100f https://www.encodeproject.org/files/ENCFF002EWZ/@@download/ENCFF002EWZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002EXA/ released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF002EXB fastq reads ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 1 36 single-ended 649484050 Michael Snyder, Stanford b18dd9fc2979894790a4d23fe3399407 https://www.encodeproject.org/files/ENCFF002EXB/@@download/ENCFF002EXB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002EXD/ released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF106CMZ bam unfiltered alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EXB, ENCFF643CGH 907047090 ENCODE Processing Pipeline b1c31141d8f84b7d09dc259a578d968d https://www.encodeproject.org/files/ENCFF106CMZ/@@download/ENCFF106CMZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF395CME bam unfiltered alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EWZ, ENCFF643CGH 1353865817 ENCODE Processing Pipeline d16a2baabd2cd60c985b520c87c0461f https://www.encodeproject.org/files/ENCFF395CME/@@download/ENCFF395CME.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF883RNJ bam unfiltered alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EWZ, ENCFF807MUK 1347361577 ENCODE Processing Pipeline e0beb0ab2efe36e4c4991e0d4948a6c7 https://www.encodeproject.org/files/ENCFF883RNJ/@@download/ENCFF883RNJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF179WEZ bam unfiltered alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EXB, ENCFF807MUK 903175413 ENCODE Processing Pipeline c1fd9f9da89ba950137dcd98afe17ec9 https://www.encodeproject.org/files/ENCFF179WEZ/@@download/ENCFF179WEZ.bam hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF425QOU bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EWZ, ENCFF643CGH 935070210 ENCODE Processing Pipeline 91b5115f4aceadd5681e7a15c9f92f2e https://www.encodeproject.org/files/ENCFF425QOU/@@download/ENCFF425QOU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF977MAY bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EXB, ENCFF807MUK 594411027 ENCODE Processing Pipeline e18cb4cbf91fb72dc20974e6371a92de https://www.encodeproject.org/files/ENCFF977MAY/@@download/ENCFF977MAY.bam hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF528IMZ bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EXB, ENCFF643CGH 594022152 ENCODE Processing Pipeline 7c1296653e9698d994139770a84679e6 https://www.encodeproject.org/files/ENCFF528IMZ/@@download/ENCFF528IMZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF947OYN bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EWZ, ENCFF807MUK 935537850 ENCODE Processing Pipeline 5213b4ec6c4394ec4d79f5acdfe19546 https://www.encodeproject.org/files/ENCFF947OYN/@@download/ENCFF947OYN.bam hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF306XCP bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF528IMZ 4567430 ENCODE Processing Pipeline e8cdd3b3e382e69918d942ef06db6b28 https://www.encodeproject.org/files/ENCFF306XCP/@@download/ENCFF306XCP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF774SIC bigWig signal p-value ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN, ENCFF977MAY 814652224 ENCODE Processing Pipeline aac01296301058e6d81c12245d900fe2 https://www.encodeproject.org/files/ENCFF774SIC/@@download/ENCFF774SIC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF839QKO bigWig fold change over control ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN 550839196 ENCODE Processing Pipeline 16b7ca327f0e83a05a7bfdf4635d48eb https://www.encodeproject.org/files/ENCFF839QKO/@@download/ENCFF839QKO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF420ZVP bigBed narrowPeak conservative idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF511PPM 1197486 ENCODE Processing Pipeline 9fbb60145f48d91e9afc7139179cff04 https://www.encodeproject.org/files/ENCFF420ZVP/@@download/ENCFF420ZVP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF626BAY bigWig signal p-value ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN 647317950 ENCODE Processing Pipeline 8fb22964803729b13e218301b834015d https://www.encodeproject.org/files/ENCFF626BAY/@@download/ENCFF626BAY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF597EQP bigWig signal p-value ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF498EIA, ENCFF631FAS, ENCFF977MAY 565550982 ENCODE Processing Pipeline a7e609ec33c4ef48db5e05888d0f318a https://www.encodeproject.org/files/ENCFF597EQP/@@download/ENCFF597EQP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF181QAF bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN, ENCFF977MAY 5294903 ENCODE Processing Pipeline 2a099513a97ecf061f3215513e48813e https://www.encodeproject.org/files/ENCFF181QAF/@@download/ENCFF181QAF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF799NHD bigWig fold change over control ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF498EIA, ENCFF631FAS, ENCFF977MAY 382405223 ENCODE Processing Pipeline 6d670cd91a3aac246076ab2b0b280feb https://www.encodeproject.org/files/ENCFF799NHD/@@download/ENCFF799NHD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF555SBI bigWig fold change over control ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN, ENCFF977MAY 770771572 ENCODE Processing Pipeline fd2ce349f63f2030c2d7da65aa2dfd6b https://www.encodeproject.org/files/ENCFF555SBI/@@download/ENCFF555SBI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF296MNE bigBed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF322UFN 11318665 ENCODE Processing Pipeline a856b8027a22b5cd7dc37fbafa7fc513 https://www.encodeproject.org/files/ENCFF296MNE/@@download/ENCFF296MNE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF690BYG bed narrowPeak optimal idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF181QAF, ENCFF322UFN, ENCFF543EHV 653750 ENCODE Processing Pipeline b2a17b20c503b24c30195b69ff0f22f4 https://www.encodeproject.org/files/ENCFF690BYG/@@download/ENCFF690BYG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF433DBV bigWig signal p-value ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF425QOU 736961692 ENCODE Processing Pipeline 442de5e416b942e95f7b1b239f7a2192 https://www.encodeproject.org/files/ENCFF433DBV/@@download/ENCFF433DBV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF605VJI bigBed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF543EHV 11096885 ENCODE Processing Pipeline f9669add5200c5b257d344dd89d33722 https://www.encodeproject.org/files/ENCFF605VJI/@@download/ENCFF605VJI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF638MPU bigBed narrowPeak optimal idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF690BYG 1246200 ENCODE Processing Pipeline 79d9b65afcaf2954399576c658d94782 https://www.encodeproject.org/files/ENCFF638MPU/@@download/ENCFF638MPU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF997EJT bigWig signal p-value ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF425QOU, ENCFF528IMZ 830907631 ENCODE Processing Pipeline fc6ed543dc5a2f14714370325b198afb https://www.encodeproject.org/files/ENCFF997EJT/@@download/ENCFF997EJT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF234OFQ bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF425QOU, ENCFF528IMZ 5294112 ENCODE Processing Pipeline fcb56f8d9c1a8a6cdb459ced2d899bc2 https://www.encodeproject.org/files/ENCFF234OFQ/@@download/ENCFF234OFQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF143HEE bed narrowPeak optimal idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF234OFQ, ENCFF306XCP, ENCFF403GVA, ENCFF419RSJ 655157 ENCODE Processing Pipeline c65935f2f20308cf61ed4321acb9932f https://www.encodeproject.org/files/ENCFF143HEE/@@download/ENCFF143HEE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF322UFN bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN 4691621 ENCODE Processing Pipeline 17235ddc4779af39ef2599504b5ccb70 https://www.encodeproject.org/files/ENCFF322UFN/@@download/ENCFF322UFN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF543EHV bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF498EIA, ENCFF631FAS, ENCFF977MAY 4568839 ENCODE Processing Pipeline 4b258c14634d117050aaa5b3612442c2 https://www.encodeproject.org/files/ENCFF543EHV/@@download/ENCFF543EHV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF355USP bigBed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF181QAF 11882493 ENCODE Processing Pipeline 43699ad5cfe15c3570496e8c5010b398 https://www.encodeproject.org/files/ENCFF355USP/@@download/ENCFF355USP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF511PPM bed narrowPeak conservative idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF181QAF, ENCFF322UFN, ENCFF543EHV 619432 ENCODE Processing Pipeline 93ed26c83428841d8b2d8a306ae4ef0e https://www.encodeproject.org/files/ENCFF511PPM/@@download/ENCFF511PPM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF291DFW bigWig fold change over control ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF528IMZ 381123524 ENCODE Processing Pipeline 23fa9fad8893b6ef35352c210688e9fb https://www.encodeproject.org/files/ENCFF291DFW/@@download/ENCFF291DFW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF403GVA bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF425QOU 4689120 ENCODE Processing Pipeline 8639561a4b80beeff91015bdff25913d https://www.encodeproject.org/files/ENCFF403GVA/@@download/ENCFF403GVA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF985LYF bigBed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF403GVA 11317540 ENCODE Processing Pipeline afdba4ed3f094a08f1bee2bfec80abba https://www.encodeproject.org/files/ENCFF985LYF/@@download/ENCFF985LYF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF255OTG bigBed narrowPeak conservative idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF536RRU 1197657 ENCODE Processing Pipeline 913e52be0d02c3065bc6baecc4398766 https://www.encodeproject.org/files/ENCFF255OTG/@@download/ENCFF255OTG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF393WTJ bigWig fold change over control ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF425QOU 545258338 ENCODE Processing Pipeline f9e5a7b362856696929abe9d90ecd725 https://www.encodeproject.org/files/ENCFF393WTJ/@@download/ENCFF393WTJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF722DBY bigWig fold change over control ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF425QOU, ENCFF528IMZ 795220353 ENCODE Processing Pipeline d756ded604ee8fe60e4dbacdea274e9e https://www.encodeproject.org/files/ENCFF722DBY/@@download/ENCFF722DBY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF069HHN bigWig signal p-value ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF528IMZ 538066742 ENCODE Processing Pipeline ea71c1b792ef6f2def18ec7330a019cb https://www.encodeproject.org/files/ENCFF069HHN/@@download/ENCFF069HHN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF763FJH bigBed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF306XCP 11097073 ENCODE Processing Pipeline c0828825e8fd241beeec04e8b971c3e7 https://www.encodeproject.org/files/ENCFF763FJH/@@download/ENCFF763FJH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF123QLO bigBed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF234OFQ 11886861 ENCODE Processing Pipeline 570ba49b53ac2de5d9957b06c8a090e0 https://www.encodeproject.org/files/ENCFF123QLO/@@download/ENCFF123QLO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF536RRU bed narrowPeak conservative idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF234OFQ, ENCFF306XCP, ENCFF403GVA, ENCFF419RSJ 618835 ENCODE Processing Pipeline 45ed585b8da500450d0628138f2e0e7e https://www.encodeproject.org/files/ENCFF536RRU/@@download/ENCFF536RRU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF786TPA bigBed narrowPeak optimal idr thresholded peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF143HEE 1249552 ENCODE Processing Pipeline 7060db8d49dc50bc3b55ede6efdd5496 https://www.encodeproject.org/files/ENCFF786TPA/@@download/ENCFF786TPA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF001HLX bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMI 510195408 John Stamatoyannopoulos, UW 569e2394a221e499dcdc32b013d1d14f https://www.encodeproject.org/files/ENCFF001HLX/@@download/ENCFF001HLX.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HLY bigBed broadPeak hotspots ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQN 5948671 John Stamatoyannopoulos, UW 54e4619bf1684585062502474550cc5b https://www.encodeproject.org/files/ENCFF001HLY/@@download/ENCFF001HLY.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HLZ bigBed broadPeak hotspots ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQO 2625541 John Stamatoyannopoulos, UW c8fd3c5761e43ea2754f3290c733d66f https://www.encodeproject.org/files/ENCFF001HLZ/@@download/ENCFF001HLZ.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMA bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMK 945078894 John Stamatoyannopoulos, UW 1b56f8a8391f70ee4e0cf43bf330d533 https://www.encodeproject.org/files/ENCFF001HMA/@@download/ENCFF001HMA.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMB bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQP 1449656 John Stamatoyannopoulos, UW 4a6101a1a986dc377dd9c83a452ce1dd https://www.encodeproject.org/files/ENCFF001HMB/@@download/ENCFF001HMB.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMC bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQQ 887438 John Stamatoyannopoulos, UW 6bca891bde241b611aed5dae4bc7d717 https://www.encodeproject.org/files/ENCFF001HMC/@@download/ENCFF001HMC.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMD bigWig raw signal ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMA 173198830 John Stamatoyannopoulos, UW 94d7bf42b97c20ed6893d0416c136cd4 https://www.encodeproject.org/files/ENCFF001HMD/@@download/ENCFF001HMD.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMF bigWig raw signal ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLX 106555846 John Stamatoyannopoulos, UW 9618073e4dce2444772efbec0d428c25 https://www.encodeproject.org/files/ENCFF001HMF/@@download/ENCFF001HMF.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMI fastq reads ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 574523071 John Stamatoyannopoulos, UW bd01c0d032efb851eb039d6ba7187a9c https://www.encodeproject.org/files/ENCFF001HMI/@@download/ENCFF001HMI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HMS/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001HMK fastq reads ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1052417910 John Stamatoyannopoulos, UW d5b5fad27d83d31321ceb63ff16c2ed0 https://www.encodeproject.org/files/ENCFF001HMK/@@download/ENCFF001HMK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HMS/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001XQN bed broadPeak hotspots ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMA 3389489 John Stamatoyannopoulos, UW ce506a0481e40a2318f82ca65d6d54aa https://www.encodeproject.org/files/ENCFF001XQN/@@download/ENCFF001XQN.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001XQO bed broadPeak hotspots ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLX 1758429 John Stamatoyannopoulos, UW 233431293ee569b655f9c1256586f35d https://www.encodeproject.org/files/ENCFF001XQO/@@download/ENCFF001XQO.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001XQP bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMA 850780 John Stamatoyannopoulos, UW 4f73df136f2a0e067db84728d6033d59 https://www.encodeproject.org/files/ENCFF001XQP/@@download/ENCFF001XQP.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF001XQQ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLX 595419 John Stamatoyannopoulos, UW 917b66a2b31af8ad0d2b6b3069a93290 https://www.encodeproject.org/files/ENCFF001XQQ/@@download/ENCFF001XQQ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF002DCU bed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001XQP, ENCFF001XQQ 971278 ENCODE Consortium Analysis Working Group 5ae6a367e15ecc7f2c42171d320a6aa5 https://www.encodeproject.org/files/ENCFF002DCU/@@download/ENCFF002DCU.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF876GMY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCU 2002097 ENCODE Consortium a0bf3ccb504d4254ae6f6ac8ee77fb13 https://www.encodeproject.org/files/ENCFF876GMY/@@download/ENCFF876GMY.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF098LNJ bam unfiltered alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMI, ENCFF643CGH 671367330 ENCODE Processing Pipeline 085396530e44051cf777cc4d95f1ced3 https://www.encodeproject.org/files/ENCFF098LNJ/@@download/ENCFF098LNJ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF552FJB bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMI, ENCFF643CGH 426302936 ENCODE Processing Pipeline 0fb074a7fab2f2673c3e8f26c40beab8 https://www.encodeproject.org/files/ENCFF552FJB/@@download/ENCFF552FJB.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF252VQJ bam unfiltered alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HMK, ENCFF643CGH 1204522458 ENCODE Processing Pipeline 8ef190f35d2815794f847e32a1745b6b https://www.encodeproject.org/files/ENCFF252VQJ/@@download/ENCFF252VQJ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF388UNJ bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HMK, ENCFF643CGH 781943377 ENCODE Processing Pipeline d7b4161cdd7fd164f177600be72506fd https://www.encodeproject.org/files/ENCFF388UNJ/@@download/ENCFF388UNJ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF213WXI bam unfiltered alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMI, ENCFF807MUK 669017308 ENCODE Processing Pipeline 60e2af37ccbfa3c7ba37df9cd9b00bf2 https://www.encodeproject.org/files/ENCFF213WXI/@@download/ENCFF213WXI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF707NXH bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMI, ENCFF807MUK 426451184 ENCODE Processing Pipeline 6f0fb1116e4a621b0373f83e79d3e3dd https://www.encodeproject.org/files/ENCFF707NXH/@@download/ENCFF707NXH.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF606FRT bam unfiltered alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HMK, ENCFF807MUK 1200519334 ENCODE Processing Pipeline 009d5573e86aafc93fb0a10e52bab907 https://www.encodeproject.org/files/ENCFF606FRT/@@download/ENCFF606FRT.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF999PXI bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HMK, ENCFF807MUK 782259883 ENCODE Processing Pipeline b77ca9440133e8c9cbd4e66a1f8846b0 https://www.encodeproject.org/files/ENCFF999PXI/@@download/ENCFF999PXI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF057ICS bigWig signal p-value ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF388UNJ 271474824 ENCODE Processing Pipeline 3c398df8b909531cb330adaf410b0052 https://www.encodeproject.org/files/ENCFF057ICS/@@download/ENCFF057ICS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF114RWB bigWig signal p-value ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF388UNJ, ENCFF552FJB 257654832 ENCODE Processing Pipeline 64f0596ffebdee7731814ee58baa7818 https://www.encodeproject.org/files/ENCFF114RWB/@@download/ENCFF114RWB.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF804VSY bigWig signal p-value ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF552FJB 209639370 ENCODE Processing Pipeline 85cfae717ac352ff3cb336cf104154c4 https://www.encodeproject.org/files/ENCFF804VSY/@@download/ENCFF804VSY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF686UTE bigWig fold change over control ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF388UNJ 276076679 ENCODE Processing Pipeline 17b57752be9ab5586f072a4aed21330d https://www.encodeproject.org/files/ENCFF686UTE/@@download/ENCFF686UTE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF909KXC bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF388UNJ 4111773 ENCODE Processing Pipeline ae390b3490f9ae49e349b8b220371101 https://www.encodeproject.org/files/ENCFF909KXC/@@download/ENCFF909KXC.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF252KQS bigWig fold change over control ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF552FJB 148690829 ENCODE Processing Pipeline 8361c1eba03f4556a4e4463953ef0a4d https://www.encodeproject.org/files/ENCFF252KQS/@@download/ENCFF252KQS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF659HPU bigWig fold change over control ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF388UNJ, ENCFF552FJB 381409851 ENCODE Processing Pipeline 8b9141f069f41a0eec6e77beb87b1de0 https://www.encodeproject.org/files/ENCFF659HPU/@@download/ENCFF659HPU.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF148VWR bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF552FJB 3411285 ENCODE Processing Pipeline 88321634cf96b9e33d5d5bc76c3076b1 https://www.encodeproject.org/files/ENCFF148VWR/@@download/ENCFF148VWR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF703ZOF bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF388UNJ, ENCFF552FJB 4458037 ENCODE Processing Pipeline 7503ce9cfe44dc66edf5b71f00d55fd4 https://www.encodeproject.org/files/ENCFF703ZOF/@@download/ENCFF703ZOF.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF371IPM bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF703ZOF 10831260 ENCODE Processing Pipeline 7cbb9b18dc7fa4f9fd2facaebfa26463 https://www.encodeproject.org/files/ENCFF371IPM/@@download/ENCFF371IPM.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF964VIQ bed narrowPeak conservative idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF148VWR, ENCFF419RSJ, ENCFF703ZOF, ENCFF909KXC 738909 ENCODE Processing Pipeline 53dbb236353aaff0d0b87aa2ef992976 https://www.encodeproject.org/files/ENCFF964VIQ/@@download/ENCFF964VIQ.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF468EGE bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF909KXC 10336977 ENCODE Processing Pipeline a9bf4a9cf8e76c1ed98b6fc501800993 https://www.encodeproject.org/files/ENCFF468EGE/@@download/ENCFF468EGE.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF464YJP bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF148VWR 8589065 ENCODE Processing Pipeline b2f41263bb0ac9a2e9e53fe9a5bdb0f2 https://www.encodeproject.org/files/ENCFF464YJP/@@download/ENCFF464YJP.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF658RPH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF964VIQ 1311879 ENCODE Processing Pipeline 6acb79bcf183c551bfd4e4f293e25726 https://www.encodeproject.org/files/ENCFF658RPH/@@download/ENCFF658RPH.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF284FUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF796AAX 1364840 ENCODE Processing Pipeline c9c5657cf46d1e1071f51b3f71b1d7ad https://www.encodeproject.org/files/ENCFF284FUS/@@download/ENCFF284FUS.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF796AAX bed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF148VWR, ENCFF419RSJ, ENCFF703ZOF, ENCFF909KXC 780366 ENCODE Processing Pipeline 6578646cc319fd4b0218016b1a2fa17c https://www.encodeproject.org/files/ENCFF796AAX/@@download/ENCFF796AAX.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF794JBW bigWig signal p-value ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF145CAZ, ENCFF999PXI 271628894 ENCODE Processing Pipeline 792e22092316bbfbd99aa3904e5e2e89 https://www.encodeproject.org/files/ENCFF794JBW/@@download/ENCFF794JBW.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF186HJX bigWig signal p-value ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF145CAZ, ENCFF707NXH 252669439 ENCODE Processing Pipeline 333578d0a86b1f6dec63e95109afdc3f https://www.encodeproject.org/files/ENCFF186HJX/@@download/ENCFF186HJX.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF260QGJ bigWig fold change over control ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF145CAZ, ENCFF999PXI 276150004 ENCODE Processing Pipeline 820479ce76d91a8ea299bba415c253bd https://www.encodeproject.org/files/ENCFF260QGJ/@@download/ENCFF260QGJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF015JHG bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF145CAZ, ENCFF999PXI 4136561 ENCODE Processing Pipeline b722740c8432187aec3b4e6da26dbe36 https://www.encodeproject.org/files/ENCFF015JHG/@@download/ENCFF015JHG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF885QMA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF373BXG 1328814 ENCODE Processing Pipeline ae4d4d30d8487769ad492457c01a874b https://www.encodeproject.org/files/ENCFF885QMA/@@download/ENCFF885QMA.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF416KTJ bigWig fold change over control ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF145CAZ, ENCFF707NXH 148732315 ENCODE Processing Pipeline 9e1faa5674e179f0631097e69af5e179 https://www.encodeproject.org/files/ENCFF416KTJ/@@download/ENCFF416KTJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF114UPJ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF145CAZ, ENCFF707NXH 3429862 ENCODE Processing Pipeline bc7fbcace730b80b2ed24ecc3ecc69f7 https://www.encodeproject.org/files/ENCFF114UPJ/@@download/ENCFF114UPJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF472JGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF528VFN 1383439 ENCODE Processing Pipeline dba155661bae04a0e14b7191eaa37404 https://www.encodeproject.org/files/ENCFF472JGE/@@download/ENCFF472JGE.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF183ZPP bigWig signal p-value ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF145CAZ, ENCFF707NXH, ENCFF999PXI 261393071 ENCODE Processing Pipeline 2c1cb41f466549e7a89796619d43eb55 https://www.encodeproject.org/files/ENCFF183ZPP/@@download/ENCFF183ZPP.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF301DNK bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF145CAZ, ENCFF707NXH, ENCFF999PXI 4493579 ENCODE Processing Pipeline 70a5a664624707875920107dbfae9e19 https://www.encodeproject.org/files/ENCFF301DNK/@@download/ENCFF301DNK.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF808KHX bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF301DNK 10874292 ENCODE Processing Pipeline 9a48e5ba06cf086ede430fa63c0828f1 https://www.encodeproject.org/files/ENCFF808KHX/@@download/ENCFF808KHX.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF921VIR bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF015JHG 10375362 ENCODE Processing Pipeline 45709644201e5ef9eed91657969dda1a https://www.encodeproject.org/files/ENCFF921VIR/@@download/ENCFF921VIR.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF827LVJ bigWig fold change over control ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF145CAZ, ENCFF707NXH, ENCFF999PXI 386483377 ENCODE Processing Pipeline ec4e0d836995c7e6d0bdad6f5536ea0c https://www.encodeproject.org/files/ENCFF827LVJ/@@download/ENCFF827LVJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF438VJR bigBed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF114UPJ 8626368 ENCODE Processing Pipeline 07f0611e2f38783299e139bf8eb1fdc4 https://www.encodeproject.org/files/ENCFF438VJR/@@download/ENCFF438VJR.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF373BXG bed narrowPeak conservative idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF015JHG, ENCFF114UPJ, ENCFF301DNK 748053 ENCODE Processing Pipeline 42fb651ef2df49e0d8e928cf08ce283c https://www.encodeproject.org/files/ENCFF373BXG/@@download/ENCFF373BXG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF528VFN bed narrowPeak optimal idr thresholded peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF015JHG, ENCFF114UPJ, ENCFF301DNK 789908 ENCODE Processing Pipeline a0f666e95ff0fbc506d613ddf1c48a4a https://www.encodeproject.org/files/ENCFF528VFN/@@download/ENCFF528VFN.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF632OUF fastq reads ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF762MHK 2472703602 Michael Snyder, Stanford 25a1369e789735f77ba09887a4166c57 SRA:SRR5111605 https://www.encodeproject.org/files/ENCFF632OUF/@@download/ENCFF632OUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF382AAJ fastq reads ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF991FZE 2003187315 Michael Snyder, Stanford 43530e91bc5fa443442b18ded5d178fb SRA:SRR5111604 https://www.encodeproject.org/files/ENCFF382AAJ/@@download/ENCFF382AAJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF762MHK fastq reads ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF632OUF 2527898689 Michael Snyder, Stanford 08f9a32643f6b05116316c0bec6cd83c SRA:SRR5111605 https://www.encodeproject.org/files/ENCFF762MHK/@@download/ENCFF762MHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF991FZE fastq reads ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF382AAJ 2048131667 Michael Snyder, Stanford e89ad2227392d93854e746174c3a6cf4 SRA:SRR5111604 https://www.encodeproject.org/files/ENCFF991FZE/@@download/ENCFF991FZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF067VAZ bam unfiltered alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382AAJ, ENCFF643CGH, ENCFF991FZE 4491079824 ENCODE Processing Pipeline c9c1cfd388ba84bbd5fc9beb5390a07b https://www.encodeproject.org/files/ENCFF067VAZ/@@download/ENCFF067VAZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF803NDH bam unfiltered alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382AAJ, ENCFF807MUK, ENCFF991FZE 4487671239 ENCODE Processing Pipeline 8c4253e0eafa2e5ecd59fc69f2c512c0 https://www.encodeproject.org/files/ENCFF803NDH/@@download/ENCFF803NDH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF857EYK bam unfiltered alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF632OUF, ENCFF762MHK, ENCFF807MUK 5501820485 ENCODE Processing Pipeline db1c985489fbde6acc1174c727d9c3e5 https://www.encodeproject.org/files/ENCFF857EYK/@@download/ENCFF857EYK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF627MEX bam unfiltered alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF632OUF, ENCFF643CGH, ENCFF762MHK 5506699205 ENCODE Processing Pipeline 7d392fab35fc5fe5bf92c6079a1c4374 https://www.encodeproject.org/files/ENCFF627MEX/@@download/ENCFF627MEX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF955GGR bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382AAJ, ENCFF807MUK, ENCFF991FZE 3776938779 ENCODE Processing Pipeline 290845663519f1502a9ed2bfe48914b8 https://www.encodeproject.org/files/ENCFF955GGR/@@download/ENCFF955GGR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF458TQM bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382AAJ, ENCFF643CGH, ENCFF991FZE 3777062046 ENCODE Processing Pipeline 370dc98fd633784340fadaebed8adf9b https://www.encodeproject.org/files/ENCFF458TQM/@@download/ENCFF458TQM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF186YMP bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF632OUF, ENCFF643CGH, ENCFF762MHK 4504820304 ENCODE Processing Pipeline 3ee524e59bdc860c8c41ec2660a12c91 https://www.encodeproject.org/files/ENCFF186YMP/@@download/ENCFF186YMP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF200VJD bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF632OUF, ENCFF762MHK, ENCFF807MUK 4503640219 ENCODE Processing Pipeline eebc09c880b69353a871be7d73a83fa6 https://www.encodeproject.org/files/ENCFF200VJD/@@download/ENCFF200VJD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF109OJL bigWig signal p-value ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF200VJD 1385831754 ENCODE Processing Pipeline 6a1125c71290f7d430c525a0617c631a https://www.encodeproject.org/files/ENCFF109OJL/@@download/ENCFF109OJL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF377OAI bigWig signal p-value ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF955GGR 1232508981 ENCODE Processing Pipeline 32a4f14cbf2d596a63c62b6253f158d2 https://www.encodeproject.org/files/ENCFF377OAI/@@download/ENCFF377OAI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF469NPP bigWig signal p-value ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF200VJD, ENCFF955GGR 1735049620 ENCODE Processing Pipeline fb64e2784337833c029f99700c223054 https://www.encodeproject.org/files/ENCFF469NPP/@@download/ENCFF469NPP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF742LMT bigWig fold change over control ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF200VJD 1440374010 ENCODE Processing Pipeline a0a00d8858323f41df7e9cb0483af70b https://www.encodeproject.org/files/ENCFF742LMT/@@download/ENCFF742LMT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF353ISZ bigWig fold change over control ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF955GGR 1287113749 ENCODE Processing Pipeline 7adb49901f2aff2e2bdd924c3a9e0e10 https://www.encodeproject.org/files/ENCFF353ISZ/@@download/ENCFF353ISZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF727FBN bigWig fold change over control ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF200VJD, ENCFF955GGR 1930708291 ENCODE Processing Pipeline 5d4568eed3601260b787e882954d9e09 https://www.encodeproject.org/files/ENCFF727FBN/@@download/ENCFF727FBN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF987HTT bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF200VJD 6907703 ENCODE Processing Pipeline cb3d0d48bf6463a73e50df068272eebc https://www.encodeproject.org/files/ENCFF987HTT/@@download/ENCFF987HTT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF322LBK bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF955GGR 6923658 ENCODE Processing Pipeline d280dada6a0e9a4e4f32effaed2231ff https://www.encodeproject.org/files/ENCFF322LBK/@@download/ENCFF322LBK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF499TCE bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF200VJD, ENCFF955GGR 7221315 ENCODE Processing Pipeline 2d4619ce889f7c094524c7990ab14554 https://www.encodeproject.org/files/ENCFF499TCE/@@download/ENCFF499TCE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF383KFT bigBed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF987HTT 13440732 ENCODE Processing Pipeline 5ead2719b55ca7c8f11229bfd369670c https://www.encodeproject.org/files/ENCFF383KFT/@@download/ENCFF383KFT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF199BBK bigBed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF322LBK 13338963 ENCODE Processing Pipeline 95568944b18cafca51a3ecef7fb8e6ee https://www.encodeproject.org/files/ENCFF199BBK/@@download/ENCFF199BBK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF642SPK bigBed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF499TCE 13257419 ENCODE Processing Pipeline 5d17c5396e206978749c54624fd16f74 https://www.encodeproject.org/files/ENCFF642SPK/@@download/ENCFF642SPK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF234SBM bed narrowPeak conservative idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF322LBK, ENCFF499TCE, ENCFF987HTT 209563 ENCODE Processing Pipeline 6a4ecc8efb0c53de36c9cefa823c01c9 https://www.encodeproject.org/files/ENCFF234SBM/@@download/ENCFF234SBM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF953LBD bigBed narrowPeak conservative idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF234SBM 429473 ENCODE Processing Pipeline 218b97e58abc465da03d26c77499ab0a https://www.encodeproject.org/files/ENCFF953LBD/@@download/ENCFF953LBD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF850TPX bed narrowPeak optimal idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF322LBK, ENCFF499TCE, ENCFF987HTT 282591 ENCODE Processing Pipeline b697a9e3479545db2352820df431b92f https://www.encodeproject.org/files/ENCFF850TPX/@@download/ENCFF850TPX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF185MHZ bigBed narrowPeak optimal idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF850TPX 533377 ENCODE Processing Pipeline 1390fa05eb6971044b9e0ee1ae2b76e6 https://www.encodeproject.org/files/ENCFF185MHZ/@@download/ENCFF185MHZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF052VXD bigWig signal p-value ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF458TQM 1341457327 ENCODE Processing Pipeline c485775692bc5e37bcfcbafa97ce62da https://www.encodeproject.org/files/ENCFF052VXD/@@download/ENCFF052VXD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF583FPC bigWig signal p-value ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF186YMP 1206904299 ENCODE Processing Pipeline c5b10860af73093acbae0dd32f17af9a https://www.encodeproject.org/files/ENCFF583FPC/@@download/ENCFF583FPC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF730NXJ bigWig signal p-value ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF186YMP, ENCFF458TQM 1636554995 ENCODE Processing Pipeline f3e8d92c743e55236849f02b16a3903b https://www.encodeproject.org/files/ENCFF730NXJ/@@download/ENCFF730NXJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF466CWT bigWig fold change over control ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF186YMP 1430758522 ENCODE Processing Pipeline 9f14b202fb1c6ff14a2e6c3b8d4022d4 https://www.encodeproject.org/files/ENCFF466CWT/@@download/ENCFF466CWT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF368ZWG bigWig fold change over control ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF458TQM 1302062613 ENCODE Processing Pipeline 9568bc00570b88c5f357fbc8e5dc7371 https://www.encodeproject.org/files/ENCFF368ZWG/@@download/ENCFF368ZWG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF197LVG bigWig fold change over control ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF186YMP, ENCFF458TQM 1896781371 ENCODE Processing Pipeline af492a4bbee4b9d6f2f76b379b208012 https://www.encodeproject.org/files/ENCFF197LVG/@@download/ENCFF197LVG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF884QLU bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF186YMP 6780392 ENCODE Processing Pipeline 8b72a19f1bac453944eef4b704d38bbb https://www.encodeproject.org/files/ENCFF884QLU/@@download/ENCFF884QLU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF839NOG bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF186YMP, ENCFF458TQM 7195718 ENCODE Processing Pipeline 844f489d4a6ddac7d9d5e48de98a5423 https://www.encodeproject.org/files/ENCFF839NOG/@@download/ENCFF839NOG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF666CWH bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF458TQM 6824608 ENCODE Processing Pipeline 0ab4812f9ffdc918b2cf4345dd8b3ab7 https://www.encodeproject.org/files/ENCFF666CWH/@@download/ENCFF666CWH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF199USU bigBed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF884QLU 13453874 ENCODE Processing Pipeline 9efe77b715af65fc003debafbd24e9d3 https://www.encodeproject.org/files/ENCFF199USU/@@download/ENCFF199USU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF942WQS bigBed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF666CWH 13371534 ENCODE Processing Pipeline 33b4c866dce023b8de7dcf6664c69249 https://www.encodeproject.org/files/ENCFF942WQS/@@download/ENCFF942WQS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF378VJK bigBed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF839NOG 13272538 ENCODE Processing Pipeline 173abad0306a8ea0d01ad90b41d7cb60 https://www.encodeproject.org/files/ENCFF378VJK/@@download/ENCFF378VJK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF755FMU bed narrowPeak optimal idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF666CWH, ENCFF839NOG, ENCFF884QLU 283696 ENCODE Processing Pipeline 2cc7e754d7a732576099959dfc116b0a https://www.encodeproject.org/files/ENCFF755FMU/@@download/ENCFF755FMU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF156EDQ bed narrowPeak conservative idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF666CWH, ENCFF839NOG, ENCFF884QLU 212483 ENCODE Processing Pipeline 69d289c9ab4cb4d174eda114a86db935 https://www.encodeproject.org/files/ENCFF156EDQ/@@download/ENCFF156EDQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF660PPU bigBed narrowPeak conservative idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF156EDQ 433639 ENCODE Processing Pipeline ef411a4b688f8ff1b8c2bd48cb300a6e https://www.encodeproject.org/files/ENCFF660PPU/@@download/ENCFF660PPU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF248OZA bigBed narrowPeak optimal idr thresholded peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF755FMU 536772 ENCODE Processing Pipeline 6b9f1417076e14d4cde040691fd2c179 https://www.encodeproject.org/files/ENCFF248OZA/@@download/ENCFF248OZA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF870DTP bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF807MUK 866742514 ENCODE Processing Pipeline 6cbcf28499e8887f7fbc942f4b3d19c2 https://www.encodeproject.org/files/ENCFF870DTP/@@download/ENCFF870DTP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF500UBO bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF807MUK 989900167 ENCODE Processing Pipeline fde74b59b8606a0d7bf1a58a043cd2ce https://www.encodeproject.org/files/ENCFF500UBO/@@download/ENCFF500UBO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF064VGD bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 5639860 ENCODE Processing Pipeline d534856608d38b0c72cfd9c58e5d0cdd https://www.encodeproject.org/files/ENCFF064VGD/@@download/ENCFF064VGD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF696VJM bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 4522787 ENCODE Processing Pipeline cc61c87b1e26076a815a2c76000811a3 https://www.encodeproject.org/files/ENCFF696VJM/@@download/ENCFF696VJM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF684XYC bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 4028977 ENCODE Processing Pipeline b50b0499a6149391e0bdc2075424e04e https://www.encodeproject.org/files/ENCFF684XYC/@@download/ENCFF684XYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF319JBZ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF696VJM 10858722 ENCODE Processing Pipeline 91b7c1d0ea0620e20dd62e5c533c61d3 https://www.encodeproject.org/files/ENCFF319JBZ/@@download/ENCFF319JBZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF642XXB bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF684XYC 10394950 ENCODE Processing Pipeline 682da4b598b562a5bd6bf1e5dfcdd408 https://www.encodeproject.org/files/ENCFF642XXB/@@download/ENCFF642XXB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF137UDJ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF064VGD 11484454 ENCODE Processing Pipeline abc8d1d2d8f4bf5185fd1713a76bb90a https://www.encodeproject.org/files/ENCFF137UDJ/@@download/ENCFF137UDJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF299VKC bed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF064VGD, ENCFF684XYC, ENCFF696VJM 51605 ENCODE Processing Pipeline 5678deb318097f136c5332c2e6977c41 https://www.encodeproject.org/files/ENCFF299VKC/@@download/ENCFF299VKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF348FWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF299VKC 140267 ENCODE Processing Pipeline 8e3d921a06343aa6c5fb4d3aaf13c7a5 https://www.encodeproject.org/files/ENCFF348FWJ/@@download/ENCFF348FWJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF215YWS bed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF064VGD, ENCFF684XYC, ENCFF696VJM 68608 ENCODE Processing Pipeline 8ed3e2fdd452d687250b30c3559dcba6 https://www.encodeproject.org/files/ENCFF215YWS/@@download/ENCFF215YWS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF335LXU bigBed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF215YWS 163982 ENCODE Processing Pipeline 83ef05900437c9a6e2e23202f31ebe28 https://www.encodeproject.org/files/ENCFF335LXU/@@download/ENCFF335LXU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EBS fastq reads ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 733823818 Michael Snyder, Stanford b864cd40a8e69620f6d08d3880365f38 SRA:SRR5112146 https://www.encodeproject.org/files/ENCFF002EBS/@@download/ENCFF002EBS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002ECX fastq reads ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 791172131 Michael Snyder, Stanford 754d21b787c120ff70c37aab896a51d9 SRA:SRR5112145 https://www.encodeproject.org/files/ENCFF002ECX/@@download/ENCFF002ECX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF249XQG bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF807MUK 690113223 ENCODE Processing Pipeline 734f6a6b68d7dccb99e676330b7bbb2a https://www.encodeproject.org/files/ENCFF249XQG/@@download/ENCFF249XQG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF821WKC bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF807MUK 518307101 ENCODE Processing Pipeline 63e1ac78539676d08c877be7c0d26810 https://www.encodeproject.org/files/ENCFF821WKC/@@download/ENCFF821WKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF575BDK bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 440233613 ENCODE Processing Pipeline ffd6cc03ee32e4ffed52cdc9d41ed40f https://www.encodeproject.org/files/ENCFF575BDK/@@download/ENCFF575BDK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF590FPG bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 443780504 ENCODE Processing Pipeline 4e61773dd0bfcd55a92fddb54e1e1e55 https://www.encodeproject.org/files/ENCFF590FPG/@@download/ENCFF590FPG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF683TWU bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 868962212 ENCODE Processing Pipeline ee7f276970d9379c211676722fa456a4 https://www.encodeproject.org/files/ENCFF683TWU/@@download/ENCFF683TWU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF695WAT bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 320586377 ENCODE Processing Pipeline 98e144a6f3a0e2417688613fc7818713 https://www.encodeproject.org/files/ENCFF695WAT/@@download/ENCFF695WAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF784YSY bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 829211905 ENCODE Processing Pipeline 0fb2163dd35bc38565a3551ea5b04511 https://www.encodeproject.org/files/ENCFF784YSY/@@download/ENCFF784YSY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF154ART bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 380692452 ENCODE Processing Pipeline 615c28a81ed4e3db0c25c345149507c4 https://www.encodeproject.org/files/ENCFF154ART/@@download/ENCFF154ART.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF285WIV bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF821WKC, ENCFF849LYY 4157810 ENCODE Processing Pipeline 70fbdb467a6aa7901cd651f144f87f47 https://www.encodeproject.org/files/ENCFF285WIV/@@download/ENCFF285WIV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF431SLO bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 4659702 ENCODE Processing Pipeline 447f5abf22caeb918000542e52d323e8 https://www.encodeproject.org/files/ENCFF431SLO/@@download/ENCFF431SLO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF214BKN bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF249XQG, ENCFF426WJH, ENCFF821WKC, ENCFF849LYY 5853090 ENCODE Processing Pipeline aec03a0caf2cd44a6de34e975cd86a6a https://www.encodeproject.org/files/ENCFF214BKN/@@download/ENCFF214BKN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF955TWQ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF285WIV 10693672 ENCODE Processing Pipeline 39a8e45d28d5eb680e68abe48388c22c https://www.encodeproject.org/files/ENCFF955TWQ/@@download/ENCFF955TWQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF175IVP bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF214BKN 11518622 ENCODE Processing Pipeline 2f9ddc8b022da259ad91df9a2eedac55 https://www.encodeproject.org/files/ENCFF175IVP/@@download/ENCFF175IVP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF210EWK bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF431SLO 10969771 ENCODE Processing Pipeline 34c7885ef04531180a3d619284c6c84d https://www.encodeproject.org/files/ENCFF210EWK/@@download/ENCFF210EWK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF295HEG bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF643CGH 869862823 ENCODE Processing Pipeline 7f9d770a8362b83b1d51f3d294417932 https://www.encodeproject.org/files/ENCFF295HEG/@@download/ENCFF295HEG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF136YJS bam unfiltered alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF643CGH 994517683 ENCODE Processing Pipeline 11b54086c0a7add4cfdcc83b72f8dfec https://www.encodeproject.org/files/ENCFF136YJS/@@download/ENCFF136YJS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF809AHN bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF643CGH 519166515 ENCODE Processing Pipeline 98440f69f5a45ac56b440a74dbe66bd2 https://www.encodeproject.org/files/ENCFF809AHN/@@download/ENCFF809AHN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF110LOM bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF643CGH 690533915 ENCODE Processing Pipeline e9927a8b1f828d7af4e50a9ae986a629 https://www.encodeproject.org/files/ENCFF110LOM/@@download/ENCFF110LOM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF695NGH bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF110LOM, ENCFF872ERZ 553117647 ENCODE Processing Pipeline c38cf1281aea170e4c22b19db49df6ed https://www.encodeproject.org/files/ENCFF695NGH/@@download/ENCFF695NGH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF980YFO bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF272DEZ, ENCFF809AHN 436129833 ENCODE Processing Pipeline 02b343b0ccc49da7ec87776bfe39bf33 https://www.encodeproject.org/files/ENCFF980YFO/@@download/ENCFF980YFO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF117JYI bigWig signal p-value ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF110LOM, ENCFF272DEZ, ENCFF809AHN, ENCFF872ERZ 1029146746 ENCODE Processing Pipeline 89f9ee549fb720c6f2568f6b33828459 https://www.encodeproject.org/files/ENCFF117JYI/@@download/ENCFF117JYI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF541UDJ bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF110LOM, ENCFF872ERZ 390479935 ENCODE Processing Pipeline 57f8a7beff1df4f08b2be60dd87e96bc https://www.encodeproject.org/files/ENCFF541UDJ/@@download/ENCFF541UDJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002HBZ bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF272DEZ, ENCFF809AHN 335475097 ENCODE Processing Pipeline 91ca183f65f6848130d5db90532b3ee9 https://www.encodeproject.org/files/ENCFF002HBZ/@@download/ENCFF002HBZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF779ODE bigWig fold change over control ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF110LOM, ENCFF272DEZ, ENCFF809AHN, ENCFF872ERZ 784603583 ENCODE Processing Pipeline 550eb0980f25c032fba11eb9d4b30382 https://www.encodeproject.org/files/ENCFF779ODE/@@download/ENCFF779ODE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF439XLJ bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF272DEZ, ENCFF809AHN 4036442 ENCODE Processing Pipeline 88607fe3ad9044771032b934cd95bc98 https://www.encodeproject.org/files/ENCFF439XLJ/@@download/ENCFF439XLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF806LSD bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 ENCFF439XLJ 10389350 ENCODE Processing Pipeline 5838fa945e0e01f797fe67aa9d7bc53f https://www.encodeproject.org/files/ENCFF806LSD/@@download/ENCFF806LSD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF500JAL bed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF254XZF, ENCFF419RSJ, ENCFF439XLJ, ENCFF879ILK 57694 ENCODE Processing Pipeline 9efd4b55f321f49a6c85870e3a785e20 https://www.encodeproject.org/files/ENCFF500JAL/@@download/ENCFF500JAL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF879ILK bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF110LOM, ENCFF872ERZ 4526263 ENCODE Processing Pipeline 55aad9e83adf7e57ff9937443628cdd0 https://www.encodeproject.org/files/ENCFF879ILK/@@download/ENCFF879ILK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF254XZF bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF110LOM, ENCFF272DEZ, ENCFF809AHN, ENCFF872ERZ 5629234 ENCODE Processing Pipeline 0ca9937df41416e330d7c253ec980ebd https://www.encodeproject.org/files/ENCFF254XZF/@@download/ENCFF254XZF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF045RMS bigBed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF500JAL 174767 ENCODE Processing Pipeline 55e1eca0fcdf8be1299f60a344f8af80 https://www.encodeproject.org/files/ENCFF045RMS/@@download/ENCFF045RMS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF761HOM bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF254XZF 11493656 ENCODE Processing Pipeline fd7a87e3667b0225f2f4fb8c5e9290fb https://www.encodeproject.org/files/ENCFF761HOM/@@download/ENCFF761HOM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF402TSJ bed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF254XZF, ENCFF419RSJ, ENCFF439XLJ, ENCFF879ILK 72629 ENCODE Processing Pipeline ed813bb8fc7ce63c94d3d81065878870 https://www.encodeproject.org/files/ENCFF402TSJ/@@download/ENCFF402TSJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF502DTZ bigBed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF879ILK 10861412 ENCODE Processing Pipeline c96731f8a1dfd84103a52d73e706117a https://www.encodeproject.org/files/ENCFF502DTZ/@@download/ENCFF502DTZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF218JDE bigBed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF402TSJ 201131 ENCODE Processing Pipeline 95a504bc6a6bdf2f46437e807584a75b https://www.encodeproject.org/files/ENCFF218JDE/@@download/ENCFF218JDE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF173YZN bed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF214BKN, ENCFF285WIV, ENCFF431SLO 45228 ENCODE Processing Pipeline 8840c1c90fc7e0785f01ff5aa3f6d305 https://www.encodeproject.org/files/ENCFF173YZN/@@download/ENCFF173YZN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF103IOJ bed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF214BKN, ENCFF285WIV, ENCFF431SLO 58114 ENCODE Processing Pipeline c2b96d2f10d13460597b65d1177b6930 https://www.encodeproject.org/files/ENCFF103IOJ/@@download/ENCFF103IOJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF157SEX bigBed narrowPeak conservative idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF173YZN 132057 ENCODE Processing Pipeline 9fb22149e70412d7b7f37f792db0a7b3 https://www.encodeproject.org/files/ENCFF157SEX/@@download/ENCFF157SEX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF890XSD bigBed narrowPeak optimal idr thresholded peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF103IOJ 150680 ENCODE Processing Pipeline 018b2e6b14faccd7e3cbf1dcd59e4bfc https://www.encodeproject.org/files/ENCFF890XSD/@@download/ENCFF890XSD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF981BKV bam unfiltered alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBV, ENCFF807MUK 1249924064 ENCODE Processing Pipeline a803febb00fde30e93abfaeae9d548c4 https://www.encodeproject.org/files/ENCFF981BKV/@@download/ENCFF981BKV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF904LPN bam unfiltered alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBP, ENCFF807MUK 1005002966 ENCODE Processing Pipeline 39440726df0fb899e3cda8b21126eca3 https://www.encodeproject.org/files/ENCFF904LPN/@@download/ENCFF904LPN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF408OYK bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 571265803 ENCODE Processing Pipeline 783de09f5bd49467394a6310d2298f82 https://www.encodeproject.org/files/ENCFF408OYK/@@download/ENCFF408OYK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF233UME bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 383521621 ENCODE Processing Pipeline e16c626efaea1cc9bb9949971b0eb878 https://www.encodeproject.org/files/ENCFF233UME/@@download/ENCFF233UME.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF530QTV bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 609392955 ENCODE Processing Pipeline ce1f4fb34bae820e1fd11974177dea2f https://www.encodeproject.org/files/ENCFF530QTV/@@download/ENCFF530QTV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF482EDG bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 956561197 ENCODE Processing Pipeline 4c57da7b676f8665328d8e276e9aaa2c https://www.encodeproject.org/files/ENCFF482EDG/@@download/ENCFF482EDG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF167LFL bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 454438966 ENCODE Processing Pipeline c6c1f5fbf9344c80ce5f2c666a99be9e https://www.encodeproject.org/files/ENCFF167LFL/@@download/ENCFF167LFL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF217SDS bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 961150942 ENCODE Processing Pipeline d460e75e1ab6cb603e3ac28c5608ffce https://www.encodeproject.org/files/ENCFF217SDS/@@download/ENCFF217SDS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF739IDN bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 4064192 ENCODE Processing Pipeline 10bc6a66f3210269046f7ffe893d1b3b https://www.encodeproject.org/files/ENCFF739IDN/@@download/ENCFF739IDN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF397JDZ bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 4084696 ENCODE Processing Pipeline 7bc6cca12ce76a4feb5c4840ecc95620 https://www.encodeproject.org/files/ENCFF397JDZ/@@download/ENCFF397JDZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF382SAW bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 5404432 ENCODE Processing Pipeline 7f4fc156441552ab0a9f437307117ad5 https://www.encodeproject.org/files/ENCFF382SAW/@@download/ENCFF382SAW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF433IXI bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF397JDZ 10620761 ENCODE Processing Pipeline eddf3cf661adace176977a212950918b https://www.encodeproject.org/files/ENCFF433IXI/@@download/ENCFF433IXI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF154IXU bed narrowPeak conservative idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF382SAW, ENCFF397JDZ, ENCFF739IDN 2019 ENCODE Processing Pipeline f41241ac6b88cf8aa87bbed9dfad5af2 https://www.encodeproject.org/files/ENCFF154IXU/@@download/ENCFF154IXU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF604PVX bigBed narrowPeak optimal idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF011KRN 63823 ENCODE Processing Pipeline f6f74c7ea2b4a9b20b41f5f396a7db07 https://www.encodeproject.org/files/ENCFF604PVX/@@download/ENCFF604PVX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF677DTP bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF739IDN 10362108 ENCODE Processing Pipeline cc35d0a9cdf66bc850e83108d9195fa1 https://www.encodeproject.org/files/ENCFF677DTP/@@download/ENCFF677DTP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF290GDM bigBed narrowPeak conservative idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF154IXU 72087 ENCODE Processing Pipeline ee95d6223ad3d7924072d4a0296ddf5a https://www.encodeproject.org/files/ENCFF290GDM/@@download/ENCFF290GDM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF870THJ bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF382SAW 11313561 ENCODE Processing Pipeline c23fedaf304ab596bccf870a76786192 https://www.encodeproject.org/files/ENCFF870THJ/@@download/ENCFF870THJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF011KRN bed narrowPeak optimal idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF382SAW, ENCFF397JDZ, ENCFF739IDN 4102 ENCODE Processing Pipeline 860948dc5236c346a8d693f201db3312 https://www.encodeproject.org/files/ENCFF011KRN/@@download/ENCFF011KRN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF002EBP fastq reads ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 699198044 Michael Snyder, Stanford 800c12b25b677b3dc5e2157e4ba39734 SRA:SRR5111229 https://www.encodeproject.org/files/ENCFF002EBP/@@download/ENCFF002EBP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth ENCFF002EBV fastq reads ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 895697534 Michael Snyder, Stanford 66be25cc5c64984b95483b5928b98ede SRA:SRR5111228 https://www.encodeproject.org/files/ENCFF002EBV/@@download/ENCFF002EBV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth ENCFF660MJY bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBP, ENCFF807MUK 641650610 ENCODE Processing Pipeline dcd263b32298109cdff9cc1a3af43525 https://www.encodeproject.org/files/ENCFF660MJY/@@download/ENCFF660MJY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF150PLO bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBV, ENCFF807MUK 813102768 ENCODE Processing Pipeline 39e7649a8f29ce153a68368580f7ef3b https://www.encodeproject.org/files/ENCFF150PLO/@@download/ENCFF150PLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF296UGS bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 567227192 ENCODE Processing Pipeline 1efe3ff0bb8b40097af8965a702bcf46 https://www.encodeproject.org/files/ENCFF296UGS/@@download/ENCFF296UGS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF502NZP bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 618648128 ENCODE Processing Pipeline 654838ad2f5e2904daed10edf9aa123d https://www.encodeproject.org/files/ENCFF502NZP/@@download/ENCFF502NZP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF683RAO bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 959480688 ENCODE Processing Pipeline 4b18fbff6679b525ac89c064cc0e5fc0 https://www.encodeproject.org/files/ENCFF683RAO/@@download/ENCFF683RAO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF330MUY bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 386516967 ENCODE Processing Pipeline 0928d22c7927a6b4be973dae7720b828 https://www.encodeproject.org/files/ENCFF330MUY/@@download/ENCFF330MUY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF740KYD bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 476552568 ENCODE Processing Pipeline fce5dddb55e04af0453ed7e59965e073 https://www.encodeproject.org/files/ENCFF740KYD/@@download/ENCFF740KYD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF437PDZ bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 949574452 ENCODE Processing Pipeline d71dcccc8c49e1cf611558b3a3bfe167 https://www.encodeproject.org/files/ENCFF437PDZ/@@download/ENCFF437PDZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF181NNV bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 5633586 ENCODE Processing Pipeline bf9643e4324ed066be22a990eb61e8f0 https://www.encodeproject.org/files/ENCFF181NNV/@@download/ENCFF181NNV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF688TJX bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 4209685 ENCODE Processing Pipeline 99e76d8e305893efffbd5686a4d47778 https://www.encodeproject.org/files/ENCFF688TJX/@@download/ENCFF688TJX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF259CSU bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF688TJX 10587693 ENCODE Processing Pipeline 364b697540222458bc602e6d742b1f57 https://www.encodeproject.org/files/ENCFF259CSU/@@download/ENCFF259CSU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF292NAI bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 4277069 ENCODE Processing Pipeline 3e2b5051cc3a350a4bd7cd2457d15ab5 https://www.encodeproject.org/files/ENCFF292NAI/@@download/ENCFF292NAI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF107EBJ bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF292NAI 10893614 ENCODE Processing Pipeline b2f113c7dd83b8226d7e65f8e9139d20 https://www.encodeproject.org/files/ENCFF107EBJ/@@download/ENCFF107EBJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF493SUS bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF181NNV 11368021 ENCODE Processing Pipeline 48774368fe462622ceb335d296554de9 https://www.encodeproject.org/files/ENCFF493SUS/@@download/ENCFF493SUS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF939IYF bam unfiltered alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBP, ENCFF643CGH 1009640727 ENCODE Processing Pipeline 094a7b7ebae17796f424d7429a72ed34 https://www.encodeproject.org/files/ENCFF939IYF/@@download/ENCFF939IYF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF610XND bam unfiltered alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBV, ENCFF643CGH 1255710655 ENCODE Processing Pipeline 8c7482bb5496c7e8856a6b1e29ec4172 https://www.encodeproject.org/files/ENCFF610XND/@@download/ENCFF610XND.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF257QQX bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBP, ENCFF643CGH 641177525 ENCODE Processing Pipeline 35fb1455742e9cfd2af350a3888122be https://www.encodeproject.org/files/ENCFF257QQX/@@download/ENCFF257QQX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF925CYF bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBV, ENCFF643CGH 812534292 ENCODE Processing Pipeline d1392d1c9d96f6b0116765e7e32aad96 https://www.encodeproject.org/files/ENCFF925CYF/@@download/ENCFF925CYF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF412SNY bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF257QQX 533501996 ENCODE Processing Pipeline 47a7701e8a3399ba8d74ffd640530cb8 https://www.encodeproject.org/files/ENCFF412SNY/@@download/ENCFF412SNY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF079JPT bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF925CYF 472240534 ENCODE Processing Pipeline 8495c3de4657ded8fb3cba0eb396944b https://www.encodeproject.org/files/ENCFF079JPT/@@download/ENCFF079JPT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF538NZJ bigWig signal p-value ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF257QQX, ENCFF577FNG, ENCFF925CYF 993578410 ENCODE Processing Pipeline be4e32ccd1060853078a4cc83508456a https://www.encodeproject.org/files/ENCFF538NZJ/@@download/ENCFF538NZJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF792JXT bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF257QQX 388578852 ENCODE Processing Pipeline 752d75da8a6d4bef7de3659f1ff25dc3 https://www.encodeproject.org/files/ENCFF792JXT/@@download/ENCFF792JXT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF770TTW bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF925CYF 468865638 ENCODE Processing Pipeline 1841aadb211c1f1bab9c21af69a860d5 https://www.encodeproject.org/files/ENCFF770TTW/@@download/ENCFF770TTW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF615WRA bigWig fold change over control ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF257QQX, ENCFF577FNG, ENCFF925CYF 980475616 ENCODE Processing Pipeline 9203d138810a5ae578ec49e26781050c https://www.encodeproject.org/files/ENCFF615WRA/@@download/ENCFF615WRA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF483AVE bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF925CYF 4078694 ENCODE Processing Pipeline c1a56fea78e8144600e1f12369ef6cf9 https://www.encodeproject.org/files/ENCFF483AVE/@@download/ENCFF483AVE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF527XGE bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF257QQX 4058451 ENCODE Processing Pipeline 9b2617dc9392137a9af23097f5df0869 https://www.encodeproject.org/files/ENCFF527XGE/@@download/ENCFF527XGE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF826QOQ bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF257QQX, ENCFF577FNG, ENCFF925CYF 5319665 ENCODE Processing Pipeline f529bb96d7a45d74efdcdf9788a64297 https://www.encodeproject.org/files/ENCFF826QOQ/@@download/ENCFF826QOQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF863GGY bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF527XGE 10361108 ENCODE Processing Pipeline a001558635d30c107ed81f62117d3885 https://www.encodeproject.org/files/ENCFF863GGY/@@download/ENCFF863GGY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF751GQQ bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF483AVE 10642562 ENCODE Processing Pipeline 0912fb1483719189738d2a98b03c3b8b https://www.encodeproject.org/files/ENCFF751GQQ/@@download/ENCFF751GQQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF927TIR bigBed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF826QOQ 11355431 ENCODE Processing Pipeline eca365643157454cf133a42417e81815 https://www.encodeproject.org/files/ENCFF927TIR/@@download/ENCFF927TIR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF056LZZ bed narrowPeak conservative idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF483AVE, ENCFF527XGE, ENCFF826QOQ 1975 ENCODE Processing Pipeline abe16d70db6d7a3517d4fbd275899bed https://www.encodeproject.org/files/ENCFF056LZZ/@@download/ENCFF056LZZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF082LUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056LZZ 78922 ENCODE Processing Pipeline 9db4aa3e4c098104921482354b864b83 https://www.encodeproject.org/files/ENCFF082LUZ/@@download/ENCFF082LUZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF186MFI bed narrowPeak optimal idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF483AVE, ENCFF527XGE, ENCFF826QOQ 3663 ENCODE Processing Pipeline 4f7ac6d1c8c85892792cdff04e1d7c4a https://www.encodeproject.org/files/ENCFF186MFI/@@download/ENCFF186MFI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF920WQS bigBed narrowPeak optimal idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF186MFI 69870 ENCODE Processing Pipeline f35c4181b7422905fb58c41302974994 https://www.encodeproject.org/files/ENCFF920WQS/@@download/ENCFF920WQS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF665VTI bed narrowPeak conservative idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF181NNV, ENCFF292NAI, ENCFF688TJX 1656 ENCODE Processing Pipeline 442ee9ea6411079615fc9490034b8777 https://www.encodeproject.org/files/ENCFF665VTI/@@download/ENCFF665VTI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF819AQD bigBed narrowPeak optimal idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF870PWV 54204 ENCODE Processing Pipeline ebdd0689e4f53d333c276f97dc44a321 https://www.encodeproject.org/files/ENCFF819AQD/@@download/ENCFF819AQD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF870PWV bed narrowPeak optimal idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF181NNV, ENCFF292NAI, ENCFF688TJX 3045 ENCODE Processing Pipeline 986967daa8d46a11dc6651f790c0f80b https://www.encodeproject.org/files/ENCFF870PWV/@@download/ENCFF870PWV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF471QHB bigBed narrowPeak conservative idr thresholded peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF665VTI 57361 ENCODE Processing Pipeline cddb346486e6ee6f9848e4140d2fc218 https://www.encodeproject.org/files/ENCFF471QHB/@@download/ENCFF471QHB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF848FMA bam unfiltered alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 100 ENCFF481RYD, ENCFF543WLX, ENCFF807MUK 5605290729 ENCODE Processing Pipeline 8042b2f8aa33ada19596e9a40ec8fe62 https://www.encodeproject.org/files/ENCFF848FMA/@@download/ENCFF848FMA.bam hg19 released ENCFF189KBX bam unfiltered alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 100 ENCFF317PWU, ENCFF764PRL, ENCFF807MUK 6100513324 ENCODE Processing Pipeline e216fedef17fa60cd82643ba529943ba https://www.encodeproject.org/files/ENCFF189KBX/@@download/ENCFF189KBX.bam hg19 released ENCFF543WLX fastq reads ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF481RYD 2537674275 Michael Snyder, Stanford da360ed8afc341c06f9b7ca26f34296e SRA:SRR5112246 https://www.encodeproject.org/files/ENCFF543WLX/@@download/ENCFF543WLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF764PRL fastq reads ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF317PWU 2773127447 Michael Snyder, Stanford 4d46a8638be1d23b73dd8fb6302a8532 SRA:SRR5112247 https://www.encodeproject.org/files/ENCFF764PRL/@@download/ENCFF764PRL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF317PWU fastq reads ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF764PRL 2795798567 Michael Snyder, Stanford 33619ef51b88da7f5acd407883b4b697 SRA:SRR5112247 https://www.encodeproject.org/files/ENCFF317PWU/@@download/ENCFF317PWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF481RYD fastq reads ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF543WLX 2555989616 Michael Snyder, Stanford b3cbf36b41360551561973982176d4f2 SRA:SRR5112246 https://www.encodeproject.org/files/ENCFF481RYD/@@download/ENCFF481RYD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF634EGZ bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF481RYD, ENCFF543WLX, ENCFF807MUK 4819764618 ENCODE Processing Pipeline f261c7599e55b1697f29556b390b505c https://www.encodeproject.org/files/ENCFF634EGZ/@@download/ENCFF634EGZ.bam hg19 released ENCFF602MLF bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF317PWU, ENCFF764PRL, ENCFF807MUK 5202252790 ENCODE Processing Pipeline 1e8b12bd6455db483a0c6ff622139d88 https://www.encodeproject.org/files/ENCFF602MLF/@@download/ENCFF602MLF.bam hg19 released ENCFF615JYS bigWig signal p-value ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF602MLF 1013018314 ENCODE Processing Pipeline cd1be9aa45b63c4b3550d173b484c8f8 https://www.encodeproject.org/files/ENCFF615JYS/@@download/ENCFF615JYS.bigWig hg19 released ENCFF583IBB bigWig signal p-value ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF049MPQ, ENCFF634EGZ 1109738628 ENCODE Processing Pipeline 3107542a0b60f1e5e95e20f2f90269da https://www.encodeproject.org/files/ENCFF583IBB/@@download/ENCFF583IBB.bigWig hg19 released ENCFF231REW bigWig signal p-value ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF602MLF, ENCFF634EGZ 1934997015 ENCODE Processing Pipeline a8a8064e32a1b3928ddc95271287bcdb https://www.encodeproject.org/files/ENCFF231REW/@@download/ENCFF231REW.bigWig hg19 released ENCFF185RGM bigWig fold change over control ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF602MLF 1147169327 ENCODE Processing Pipeline 59cc6637ceb7e0d75d979e474c0b86c8 https://www.encodeproject.org/files/ENCFF185RGM/@@download/ENCFF185RGM.bigWig hg19 released ENCFF976ZNQ bigWig fold change over control ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF049MPQ, ENCFF634EGZ 1138003626 ENCODE Processing Pipeline 2adf11bd6648fd69e1e6e2636520c4ab https://www.encodeproject.org/files/ENCFF976ZNQ/@@download/ENCFF976ZNQ.bigWig hg19 released ENCFF969AXG bigWig fold change over control ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF602MLF, ENCFF634EGZ 2109125457 ENCODE Processing Pipeline ec713863ee69a80238dfd3e3d64687cb https://www.encodeproject.org/files/ENCFF969AXG/@@download/ENCFF969AXG.bigWig hg19 released ENCFF014KHA bigBed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF239TWK 13282407 ENCODE Processing Pipeline 48d57f3938c3299a9729d0a82c526887 https://www.encodeproject.org/files/ENCFF014KHA/@@download/ENCFF014KHA.bigBed hg19 released ENCFF301EVY bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF602MLF 6658442 ENCODE Processing Pipeline e8baf65a7b4eca3efdcb5c78b6c9fe45 https://www.encodeproject.org/files/ENCFF301EVY/@@download/ENCFF301EVY.bed.gz hg19 released ENCFF239TWK bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF049MPQ, ENCFF634EGZ 6593002 ENCODE Processing Pipeline c8ea271d002a5216af0f7d2365a60489 https://www.encodeproject.org/files/ENCFF239TWK/@@download/ENCFF239TWK.bed.gz hg19 released ENCFF212CTS bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF602MLF, ENCFF634EGZ 7225529 ENCODE Processing Pipeline 17815fbf008a38f8058eb3e0ad11ed98 https://www.encodeproject.org/files/ENCFF212CTS/@@download/ENCFF212CTS.bed.gz hg19 released ENCFF050ELE bigBed narrowPeak conservative idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF978FHA 622138 ENCODE Processing Pipeline 97e75dc5fd88407b618bd22ac80b7bcf https://www.encodeproject.org/files/ENCFF050ELE/@@download/ENCFF050ELE.bigBed hg19 released ENCFF014RYJ bigBed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF301EVY 13273697 ENCODE Processing Pipeline b6b6a1d86f0d49b1fb050d6842dc1ad4 https://www.encodeproject.org/files/ENCFF014RYJ/@@download/ENCFF014RYJ.bigBed hg19 released ENCFF978FHA bed narrowPeak conservative idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF212CTS, ENCFF239TWK, ENCFF301EVY 289269 ENCODE Processing Pipeline cfd87d3d34973688c15e933b713f7cde https://www.encodeproject.org/files/ENCFF978FHA/@@download/ENCFF978FHA.bed.gz hg19 released ENCFF882QCF bigBed narrowPeak optimal idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF955YVT 756578 ENCODE Processing Pipeline fa6d138252d56d4f0441cf43226ed612 https://www.encodeproject.org/files/ENCFF882QCF/@@download/ENCFF882QCF.bigBed hg19 released ENCFF900DTG bigBed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF212CTS 13185451 ENCODE Processing Pipeline f3859581dde549c62add0f57970e0ec5 https://www.encodeproject.org/files/ENCFF900DTG/@@download/ENCFF900DTG.bigBed hg19 released ENCFF955YVT bed narrowPeak optimal idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF212CTS, ENCFF239TWK, ENCFF301EVY 372682 ENCODE Processing Pipeline f2b2b0248778f4e9e3bc207e5f52722e https://www.encodeproject.org/files/ENCFF955YVT/@@download/ENCFF955YVT.bed.gz hg19 released ENCFF528GXO bam unfiltered alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 100 ENCFF481RYD, ENCFF543WLX, ENCFF643CGH 5615744594 ENCODE Processing Pipeline 05fa8a5890db236a3aff2c71dc344b71 https://www.encodeproject.org/files/ENCFF528GXO/@@download/ENCFF528GXO.bam GRCh38 released ENCFF053LCK bam unfiltered alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 100 ENCFF317PWU, ENCFF643CGH, ENCFF764PRL 6111477826 ENCODE Processing Pipeline 57da2cf02c949c41bf914f1ff3e1c38c https://www.encodeproject.org/files/ENCFF053LCK/@@download/ENCFF053LCK.bam GRCh38 released ENCFF409PPI bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 100 ENCFF317PWU, ENCFF643CGH, ENCFF764PRL 5210233528 ENCODE Processing Pipeline eb4de137aba46d7207f11e9da0e17085 https://www.encodeproject.org/files/ENCFF409PPI/@@download/ENCFF409PPI.bam GRCh38 released ENCFF503QVH bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 100 ENCFF481RYD, ENCFF543WLX, ENCFF643CGH 4826616388 ENCODE Processing Pipeline 4c76aeb82c52929e900106df687da622 https://www.encodeproject.org/files/ENCFF503QVH/@@download/ENCFF503QVH.bam GRCh38 released ENCFF651YEP bigWig signal p-value ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF409PPI, ENCFF426RDP 1013949703 ENCODE Processing Pipeline 08227016da00735aa2f26bb305774676 https://www.encodeproject.org/files/ENCFF651YEP/@@download/ENCFF651YEP.bigWig GRCh38 released ENCFF343UQH bigWig signal p-value ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF291AFY, ENCFF503QVH 1137052053 ENCODE Processing Pipeline 1009ae07246903c7c060b6ee7d213fe9 https://www.encodeproject.org/files/ENCFF343UQH/@@download/ENCFF343UQH.bigWig GRCh38 released ENCFF622JBD bigWig signal p-value ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF291AFY, ENCFF409PPI, ENCFF426RDP, ENCFF503QVH 1875157548 ENCODE Processing Pipeline 8f20340b48c5acc6d47d9272e077ea52 https://www.encodeproject.org/files/ENCFF622JBD/@@download/ENCFF622JBD.bigWig GRCh38 released ENCFF964QUU bigWig fold change over control ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF409PPI, ENCFF426RDP 1160258004 ENCODE Processing Pipeline b53fd011b24a524059fe0dbc20ec6c04 https://www.encodeproject.org/files/ENCFF964QUU/@@download/ENCFF964QUU.bigWig GRCh38 released ENCFF608WMM bigWig fold change over control ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF291AFY, ENCFF503QVH 1137764985 ENCODE Processing Pipeline aa2de970815bf4e44fb068b9800af45f https://www.encodeproject.org/files/ENCFF608WMM/@@download/ENCFF608WMM.bigWig GRCh38 released ENCFF930AUF bigWig fold change over control ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF291AFY, ENCFF409PPI, ENCFF426RDP, ENCFF503QVH 2074171633 ENCODE Processing Pipeline c02612625d48ea20462796d004ec7554 https://www.encodeproject.org/files/ENCFF930AUF/@@download/ENCFF930AUF.bigWig GRCh38 released ENCFF026MWA bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF409PPI, ENCFF426RDP 6503457 ENCODE Processing Pipeline 33efe899cd547cba512fe7b4128366e2 https://www.encodeproject.org/files/ENCFF026MWA/@@download/ENCFF026MWA.bed.gz GRCh38 released ENCFF943ILQ bigBed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF026MWA 13288934 ENCODE Processing Pipeline d9c7d9415380138e0e88354fe8c88d9a https://www.encodeproject.org/files/ENCFF943ILQ/@@download/ENCFF943ILQ.bigBed GRCh38 released ENCFF902RWL bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF291AFY, ENCFF503QVH 6494359 ENCODE Processing Pipeline 695df16a5dd4f373dd1d6b689e3f36ad https://www.encodeproject.org/files/ENCFF902RWL/@@download/ENCFF902RWL.bed.gz GRCh38 released ENCFF852QFP bigBed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF828TZX 13213760 ENCODE Processing Pipeline 03a7cdbe96d79abc4703b5dd71429be9 https://www.encodeproject.org/files/ENCFF852QFP/@@download/ENCFF852QFP.bigBed GRCh38 released ENCFF828TZX bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF291AFY, ENCFF409PPI, ENCFF426RDP, ENCFF503QVH 7210936 ENCODE Processing Pipeline 607cae43db4ae357f1f38a5d319b9589 https://www.encodeproject.org/files/ENCFF828TZX/@@download/ENCFF828TZX.bed.gz GRCh38 released ENCFF042MCS bigBed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF902RWL 13308859 ENCODE Processing Pipeline 9acdf5177e8f4a2fbe608603c92f40ab https://www.encodeproject.org/files/ENCFF042MCS/@@download/ENCFF042MCS.bigBed GRCh38 released ENCFF329QYZ bed narrowPeak optimal idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF026MWA, ENCFF419RSJ, ENCFF828TZX, ENCFF902RWL 381817 ENCODE Processing Pipeline 4db35937e447c299500ce2bc5ad412dd https://www.encodeproject.org/files/ENCFF329QYZ/@@download/ENCFF329QYZ.bed.gz GRCh38 released ENCFF327FRU bed narrowPeak conservative idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF026MWA, ENCFF419RSJ, ENCFF828TZX, ENCFF902RWL 290719 ENCODE Processing Pipeline 508edf5d71046c33cf2c02372cfe8416 https://www.encodeproject.org/files/ENCFF327FRU/@@download/ENCFF327FRU.bed.gz GRCh38 released ENCFF513JAT bigBed narrowPeak conservative idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF327FRU 627538 ENCODE Processing Pipeline 2c08a63310625e280f37c2f9b32b994d https://www.encodeproject.org/files/ENCFF513JAT/@@download/ENCFF513JAT.bigBed GRCh38 released ENCFF297GRW bigBed narrowPeak optimal idr thresholded peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF329QYZ 773713 ENCODE Processing Pipeline 543e838de39ebbe76a8403b5fb973bfe https://www.encodeproject.org/files/ENCFF297GRW/@@download/ENCFF297GRW.bigBed GRCh38 released ENCFF900RHA fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 1 100 paired-ended 1 ENCFF993KAU 2231560793 Michael Snyder, Stanford 36b431deb58a3204f7e7b2614dc5d1d4 SRA:SRR6214362 https://www.encodeproject.org/files/ENCFF900RHA/@@download/ENCFF900RHA.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF993KAU fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 1 100 paired-ended 2 ENCFF900RHA 2678085414 Michael Snyder, Stanford 886dce0c3c7fc67bded5e2b98a9d9a40 SRA:SRR6214362 https://www.encodeproject.org/files/ENCFF993KAU/@@download/ENCFF993KAU.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF294EUQ fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 1 ENCFF742VZZ 2228543605 Michael Snyder, Stanford 12da2b5a0ccea78ca868da36aaf12435 SRA:SRR6214361 https://www.encodeproject.org/files/ENCFF294EUQ/@@download/ENCFF294EUQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF742VZZ fastq reads ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 2 ENCFF294EUQ 2432836497 Michael Snyder, Stanford 9d9c83f7401d44a5022dabe6bc106574 SRA:SRR6214361 https://www.encodeproject.org/files/ENCFF742VZZ/@@download/ENCFF742VZZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF947KGN bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF643CGH, ENCFF742VZZ 4257148640 ENCODE Processing Pipeline ecad80161e12a18acca6344ddf82b281 https://www.encodeproject.org/files/ENCFF947KGN/@@download/ENCFF947KGN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF798SEF bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF643CGH, ENCFF900RHA, ENCFF993KAU 4408680690 ENCODE Processing Pipeline 1355612736314edee01b56175fd1009f https://www.encodeproject.org/files/ENCFF798SEF/@@download/ENCFF798SEF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF576RFC bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF643CGH, ENCFF900RHA, ENCFF993KAU 2277576438 ENCODE Processing Pipeline 935d1de59d221c0158abc93053616fa9 https://www.encodeproject.org/files/ENCFF576RFC/@@download/ENCFF576RFC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF079ZYM bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF643CGH, ENCFF742VZZ 2337123030 ENCODE Processing Pipeline 43db10206a46d5da5b6edda021d2daa1 https://www.encodeproject.org/files/ENCFF079ZYM/@@download/ENCFF079ZYM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF003VDB bed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF419RSJ, ENCFF696PSB, ENCFF881LTJ, ENCFF901JIK 409426 ENCODE Processing Pipeline 7ad9ccf7ba008c33fa87406ca41e1d4d https://www.encodeproject.org/files/ENCFF003VDB/@@download/ENCFF003VDB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF079RIG bigBed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF003VDB 798875 ENCODE Processing Pipeline 00ae6d4653317752b219e22c4f70217b https://www.encodeproject.org/files/ENCFF079RIG/@@download/ENCFF079RIG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF905ETV bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF079ZYM, ENCFF666ATR 1095489072 ENCODE Processing Pipeline 3ddaa4eabaeed35ba47b4cd9ee8fba4a https://www.encodeproject.org/files/ENCFF905ETV/@@download/ENCFF905ETV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF187VYR bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF322NTO, ENCFF576RFC 1002805059 ENCODE Processing Pipeline 8100b45045fcc751085a18bae22294ab https://www.encodeproject.org/files/ENCFF187VYR/@@download/ENCFF187VYR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF298EUK bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF079ZYM, ENCFF322NTO, ENCFF576RFC, ENCFF666ATR 1842570107 ENCODE Processing Pipeline 3c0f36c75750562ad5bd32d6b255890d https://www.encodeproject.org/files/ENCFF298EUK/@@download/ENCFF298EUK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF680CVV bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF079ZYM, ENCFF666ATR 900415687 ENCODE Processing Pipeline b07517635c306fac3449b6dc7d25deff https://www.encodeproject.org/files/ENCFF680CVV/@@download/ENCFF680CVV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF290IHY bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF322NTO, ENCFF576RFC 896394757 ENCODE Processing Pipeline 56b0330d1a2bfa63e715d37fc5c1ab49 https://www.encodeproject.org/files/ENCFF290IHY/@@download/ENCFF290IHY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF901JIK bed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF079ZYM, ENCFF666ATR 5942820 ENCODE Processing Pipeline 27c6920ad3f964383a9d8c00653d8dff https://www.encodeproject.org/files/ENCFF901JIK/@@download/ENCFF901JIK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF805NTL bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF079ZYM, ENCFF322NTO, ENCFF576RFC, ENCFF666ATR 1808365468 ENCODE Processing Pipeline d151829a923df650b9a4b27f3af22fc1 https://www.encodeproject.org/files/ENCFF805NTL/@@download/ENCFF805NTL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF696PSB bed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF322NTO, ENCFF576RFC 5767055 ENCODE Processing Pipeline 0d42b60ff8e65ae9439682dadf0464d5 https://www.encodeproject.org/files/ENCFF696PSB/@@download/ENCFF696PSB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF881LTJ bed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF079ZYM, ENCFF322NTO, ENCFF576RFC, ENCFF666ATR 6915657 ENCODE Processing Pipeline 045f2658167e5b84fc429d73eb2ebb22 https://www.encodeproject.org/files/ENCFF881LTJ/@@download/ENCFF881LTJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF384LQG bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF901JIK 11431823 ENCODE Processing Pipeline d023c2eb7df2f2f6e145466455c78449 https://www.encodeproject.org/files/ENCFF384LQG/@@download/ENCFF384LQG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF338OSR bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF696PSB 11363217 ENCODE Processing Pipeline 69fc3b8a6ec218c71af2cc4a41be1b92 https://www.encodeproject.org/files/ENCFF338OSR/@@download/ENCFF338OSR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF361KIS bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF881LTJ 13486067 ENCODE Processing Pipeline 521c0f802c6eaa11775b26cd87b43a7b https://www.encodeproject.org/files/ENCFF361KIS/@@download/ENCFF361KIS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF829MGY bed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF419RSJ, ENCFF696PSB, ENCFF881LTJ, ENCFF901JIK 277266 ENCODE Processing Pipeline f88c95824b59747b440729cdeedc0ea8 https://www.encodeproject.org/files/ENCFF829MGY/@@download/ENCFF829MGY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF465KVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF829MGY 610192 ENCODE Processing Pipeline a00ee5e3346532b31b418bc9b55cff40 https://www.encodeproject.org/files/ENCFF465KVZ/@@download/ENCFF465KVZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF273SPJ bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF742VZZ, ENCFF807MUK 4260326517 ENCODE Processing Pipeline 8103876bc6ba84e9907887c03d3e8269 https://www.encodeproject.org/files/ENCFF273SPJ/@@download/ENCFF273SPJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF519PTB bam unfiltered alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF807MUK, ENCFF900RHA, ENCFF993KAU 4421404046 ENCODE Processing Pipeline f4b0d18b036cf65ee9a9c9a1f4fdfbff https://www.encodeproject.org/files/ENCFF519PTB/@@download/ENCFF519PTB.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF717MOF bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF742VZZ, ENCFF807MUK 2332804641 ENCODE Processing Pipeline 91c6f1fa5f254480fd1009feea635e9b https://www.encodeproject.org/files/ENCFF717MOF/@@download/ENCFF717MOF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF655HZW bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF807MUK, ENCFF900RHA, ENCFF993KAU 2260662340 ENCODE Processing Pipeline b15c6064f68dee55a4a9bc9091f772ef https://www.encodeproject.org/files/ENCFF655HZW/@@download/ENCFF655HZW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF559GLG bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF717MOF, ENCFF901CND 960955888 ENCODE Processing Pipeline 5534f8b889cd9eb0580c8a8a4efe5a17 https://www.encodeproject.org/files/ENCFF559GLG/@@download/ENCFF559GLG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF459SOY bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF716JVW 11405731 ENCODE Processing Pipeline fb1d9ecb454379d14bba726206a89e60 https://www.encodeproject.org/files/ENCFF459SOY/@@download/ENCFF459SOY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF027VZK bed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF001TDO, ENCFF644NTF, ENCFF716JVW, ENCFF877OQG 407625 ENCODE Processing Pipeline 145ef2f15c8164240d4f149dfa7e5c62 https://www.encodeproject.org/files/ENCFF027VZK/@@download/ENCFF027VZK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF182ATX bigBed narrowPeak optimal idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF027VZK 835401 ENCODE Processing Pipeline 562d2e2c0451574b3021543b05316c22 https://www.encodeproject.org/files/ENCFF182ATX/@@download/ENCFF182ATX.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF784PLL bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF592WAL, ENCFF655HZW 890256079 ENCODE Processing Pipeline 0297f561894856f9f0c07de14adc47a9 https://www.encodeproject.org/files/ENCFF784PLL/@@download/ENCFF784PLL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF716JVW bed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF717MOF, ENCFF901CND 5917790 ENCODE Processing Pipeline 160fbbbf59f0763ce2ad00f911f5ad13 https://www.encodeproject.org/files/ENCFF716JVW/@@download/ENCFF716JVW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF669SIE bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF592WAL, ENCFF655HZW 1021255518 ENCODE Processing Pipeline 3cb6849893c3974b75a01302ba593ec1 https://www.encodeproject.org/files/ENCFF669SIE/@@download/ENCFF669SIE.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF689NYX bigWig signal p-value ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF592WAL, ENCFF655HZW, ENCFF717MOF, ENCFF901CND 1818985977 ENCODE Processing Pipeline f8d1816bb8fd3c5b9e5a0e7439769f57 https://www.encodeproject.org/files/ENCFF689NYX/@@download/ENCFF689NYX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF645LFW bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 ENCFF717MOF, ENCFF901CND 913416163 ENCODE Processing Pipeline d0e380be6349633dae428ec71dccc5e9 https://www.encodeproject.org/files/ENCFF645LFW/@@download/ENCFF645LFW.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF006RQH bigWig fold change over control ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF592WAL, ENCFF655HZW, ENCFF717MOF, ENCFF901CND 1808045821 ENCODE Processing Pipeline 6ceb914f81e3468038fca6cbd9f9d495 https://www.encodeproject.org/files/ENCFF006RQH/@@download/ENCFF006RQH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF877OQG bed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF592WAL, ENCFF655HZW 5788573 ENCODE Processing Pipeline d1007e8e878738b67d715a15fcad9690 https://www.encodeproject.org/files/ENCFF877OQG/@@download/ENCFF877OQG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF644NTF bed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF592WAL, ENCFF655HZW, ENCFF717MOF, ENCFF901CND 6910089 ENCODE Processing Pipeline db5baa0caf2d677b03780ec0f3558c3f https://www.encodeproject.org/files/ENCFF644NTF/@@download/ENCFF644NTF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF904HTY bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 ENCFF877OQG 11418953 ENCODE Processing Pipeline dad32daddf9e489c20b5874abe981d1b https://www.encodeproject.org/files/ENCFF904HTY/@@download/ENCFF904HTY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF819LND bigBed narrowPeak peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF644NTF 13527443 ENCODE Processing Pipeline d8cfd20086c049da8c0a56bec255457d https://www.encodeproject.org/files/ENCFF819LND/@@download/ENCFF819LND.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF415CYX bed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF001TDO, ENCFF644NTF, ENCFF716JVW, ENCFF877OQG 272162 ENCODE Processing Pipeline 3414b404a6f8369cf204990eb0f9316a https://www.encodeproject.org/files/ENCFF415CYX/@@download/ENCFF415CYX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF791GSE bigBed narrowPeak conservative idr thresholded peaks ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF415CYX 506435 ENCODE Processing Pipeline 2f5269da071ecc698344cccbd64d6815 https://www.encodeproject.org/files/ENCFF791GSE/@@download/ENCFF791GSE.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000YBJ bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 1 558668329 Michael Snyder, Stanford 32d687c1ab90b87aea4a3a0d84a3d5e4 https://www.encodeproject.org/files/ENCFF000YBJ/@@download/ENCFF000YBJ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YBK bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VLN 5466210 Michael Snyder, Stanford dbad5dda0f44d848a6f6f596eb83f1c4 https://www.encodeproject.org/files/ENCFF000YBK/@@download/ENCFF000YBK.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YBL fastq reads ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1031425024 Michael Snyder, Stanford fa85aa775b0e74ea6680f93364caa919 https://www.encodeproject.org/files/ENCFF000YBL/@@download/ENCFF000YBL.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCQ/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YBM bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 1 339229672 Michael Snyder, Stanford 4917839f3debcd9c68d36f38794c8310 https://www.encodeproject.org/files/ENCFF000YBM/@@download/ENCFF000YBM.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YBO fastq reads ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 573097746 Michael Snyder, Stanford ede0ce28bcb273801d343681f494f413 https://www.encodeproject.org/files/ENCFF000YBO/@@download/ENCFF000YBO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCS/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YBQ bigWig signal ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 354445104 Michael Snyder, Stanford 829c5d7335630aae1d0c196fef4849de https://www.encodeproject.org/files/ENCFF000YBQ/@@download/ENCFF000YBQ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VLN bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2062554 Michael Snyder, Stanford 752f8e24e2b1e4ed0271bb4c7ffc10b9 https://www.encodeproject.org/files/ENCFF001VLN/@@download/ENCFF001VLN.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CVG bed narrowPeak optimal idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1544124 ENCODE Consortium Analysis Working Group fd7d9e0db03cd8c7fcb3ab3a1da534d7 https://www.encodeproject.org/files/ENCFF002CVG/@@download/ENCFF002CVG.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF897XNF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVG 2943376 ENCODE Consortium 2652e3e94d8725e8edf544ee14fce7ca https://www.encodeproject.org/files/ENCFF897XNF/@@download/ENCFF897XNF.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF056XVT bam unfiltered alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YBO, ENCFF643CGH 638526498 ENCODE Processing Pipeline 82a448979ae62d29fd6e7f0b99bf24cb https://www.encodeproject.org/files/ENCFF056XVT/@@download/ENCFF056XVT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF255AHN bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YBO, ENCFF643CGH 446779071 ENCODE Processing Pipeline 174e3ab95f6860f07f94dc3422987010 https://www.encodeproject.org/files/ENCFF255AHN/@@download/ENCFF255AHN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF359YHS bam unfiltered alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YBL, ENCFF643CGH 1145547011 ENCODE Processing Pipeline 5e7b17b4c8884187a32a046c73bcae22 https://www.encodeproject.org/files/ENCFF359YHS/@@download/ENCFF359YHS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF643KYI bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YBL, ENCFF643CGH 799550393 ENCODE Processing Pipeline f62530f2e34459085b4798b8ed2041da https://www.encodeproject.org/files/ENCFF643KYI/@@download/ENCFF643KYI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952RZS bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YBO, ENCFF807MUK 447073401 ENCODE Processing Pipeline 18b2cee1961137feba39ea8eeefa66ef https://www.encodeproject.org/files/ENCFF952RZS/@@download/ENCFF952RZS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF402ZLO bam unfiltered alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YBO, ENCFF807MUK 636094302 ENCODE Processing Pipeline 4b94d4419080596c51ae81d2ea0726ff https://www.encodeproject.org/files/ENCFF402ZLO/@@download/ENCFF402ZLO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF508INT bam unfiltered alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YBL, ENCFF807MUK 1140920591 ENCODE Processing Pipeline 7c56f736c2a3cf6b61cf90c571d88d72 https://www.encodeproject.org/files/ENCFF508INT/@@download/ENCFF508INT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF576ZHG bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YBL, ENCFF807MUK 799929697 ENCODE Processing Pipeline e9f7334f7ec922ae614e80c0a79a29fb https://www.encodeproject.org/files/ENCFF576ZHG/@@download/ENCFF576ZHG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF968NSH bigWig signal p-value ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF643KYI, ENCFF823WOO 667145731 ENCODE Processing Pipeline 3a9b8638094a52c7f1a6e35cdd8c8527 https://www.encodeproject.org/files/ENCFF968NSH/@@download/ENCFF968NSH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF342JPR bigWig signal p-value ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF255AHN, ENCFF494UKO, ENCFF823WOO 654311596 ENCODE Processing Pipeline 1f3df955332d31f27a1f0da351fd60ee https://www.encodeproject.org/files/ENCFF342JPR/@@download/ENCFF342JPR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF306ITH bigWig signal p-value ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF255AHN, ENCFF494UKO, ENCFF643KYI, ENCFF823WOO 770935449 ENCODE Processing Pipeline d4a253c2b3ba85e55195fc2084cda56c https://www.encodeproject.org/files/ENCFF306ITH/@@download/ENCFF306ITH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF196AKR bigWig fold change over control ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF643KYI, ENCFF823WOO 475106498 ENCODE Processing Pipeline 02558e97a70f6300a539cc4dae46e2d7 https://www.encodeproject.org/files/ENCFF196AKR/@@download/ENCFF196AKR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF606QIM bigWig fold change over control ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF255AHN, ENCFF494UKO, ENCFF823WOO 321720560 ENCODE Processing Pipeline c4e9349f9ad1b9e47e9ace23e7153729 https://www.encodeproject.org/files/ENCFF606QIM/@@download/ENCFF606QIM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF712KEF bigWig fold change over control ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF255AHN, ENCFF494UKO, ENCFF643KYI, ENCFF823WOO 681617904 ENCODE Processing Pipeline 0967aaa75bf1689db30d46e987cffbd9 https://www.encodeproject.org/files/ENCFF712KEF/@@download/ENCFF712KEF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF049LZC bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF255AHN, ENCFF494UKO, ENCFF643KYI, ENCFF823WOO 6510174 ENCODE Processing Pipeline 8c9bec20ec19bada94fd2026c0e34d14 https://www.encodeproject.org/files/ENCFF049LZC/@@download/ENCFF049LZC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF647RZG bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF255AHN, ENCFF494UKO, ENCFF823WOO 5251710 ENCODE Processing Pipeline 6fb9ea03e108e72f902a6eb43c023a95 https://www.encodeproject.org/files/ENCFF647RZG/@@download/ENCFF647RZG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF487PWH bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF647RZG 11495821 ENCODE Processing Pipeline 4867f83b4c6690c9cbc62b89b778a73d https://www.encodeproject.org/files/ENCFF487PWH/@@download/ENCFF487PWH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF469LVB bed narrowPeak conservative idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049LZC, ENCFF419RSJ, ENCFF482TFH, ENCFF647RZG 1269476 ENCODE Processing Pipeline 24798dac30b4cf02e52e41f07ab2ffde https://www.encodeproject.org/files/ENCFF469LVB/@@download/ENCFF469LVB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259WEY bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF482TFH 11791143 ENCODE Processing Pipeline f6440e9f653993224a014eb2395962d9 https://www.encodeproject.org/files/ENCFF259WEY/@@download/ENCFF259WEY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF482TFH bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF643KYI, ENCFF823WOO 5824502 ENCODE Processing Pipeline c034838f0b205b7b2b0672793fda4d5e https://www.encodeproject.org/files/ENCFF482TFH/@@download/ENCFF482TFH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182EWK bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049LZC 12070407 ENCODE Processing Pipeline 19044615c2942da77857ea4f8694866a https://www.encodeproject.org/files/ENCFF182EWK/@@download/ENCFF182EWK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF757KYL bed narrowPeak optimal idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049LZC, ENCFF419RSJ, ENCFF482TFH, ENCFF647RZG 1349764 ENCODE Processing Pipeline a19a60dedd9ed57ffa7930360d764c08 https://www.encodeproject.org/files/ENCFF757KYL/@@download/ENCFF757KYL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF060CSI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF757KYL 2145156 ENCODE Processing Pipeline 132fea7c06facbc90dc792ec65b45fbe https://www.encodeproject.org/files/ENCFF060CSI/@@download/ENCFF060CSI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF300IKH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF469LVB 2045434 ENCODE Processing Pipeline ed2a2c5806bb038ce49b2a5e70f58532 https://www.encodeproject.org/files/ENCFF300IKH/@@download/ENCFF300IKH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF979IKG bigWig signal p-value ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG, ENCFF952RZS 712737132 ENCODE Processing Pipeline b77d1baae0332d07d65cc3401b534464 https://www.encodeproject.org/files/ENCFF979IKG/@@download/ENCFF979IKG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF090ZLR bigWig signal p-value ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF952RZS 656253130 ENCODE Processing Pipeline f14fc165edc9153a66d31f11838d49bb https://www.encodeproject.org/files/ENCFF090ZLR/@@download/ENCFF090ZLR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF747THA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF169ZUG 2044725 ENCODE Processing Pipeline b57be2747299398340d2bc58d7de8ccc https://www.encodeproject.org/files/ENCFF747THA/@@download/ENCFF747THA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF677UPJ bigWig signal p-value ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG 750285506 ENCODE Processing Pipeline 4d106e7a33a19a85a65a3be90239c711 https://www.encodeproject.org/files/ENCFF677UPJ/@@download/ENCFF677UPJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF889YLU bigWig fold change over control ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG 477879318 ENCODE Processing Pipeline aa7a3ea9b7600907f652b2beaea25e53 https://www.encodeproject.org/files/ENCFF889YLU/@@download/ENCFF889YLU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF095DAI bigWig fold change over control ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF952RZS 321330671 ENCODE Processing Pipeline 5514b3ad73f5314aab7b49ce6827dacb https://www.encodeproject.org/files/ENCFF095DAI/@@download/ENCFF095DAI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604LSK bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF952RZS 5248301 ENCODE Processing Pipeline 13dd57e52c44a2ce112772c990f99a64 https://www.encodeproject.org/files/ENCFF604LSK/@@download/ENCFF604LSK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF563ZYA bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG, ENCFF952RZS 6507794 ENCODE Processing Pipeline ac439ecd50d5b75656431229793266b4 https://www.encodeproject.org/files/ENCFF563ZYA/@@download/ENCFF563ZYA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF554OGW bigWig fold change over control ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG, ENCFF952RZS 683411574 ENCODE Processing Pipeline c8f94da40b050bb3b73bb2da3d3a2a13 https://www.encodeproject.org/files/ENCFF554OGW/@@download/ENCFF554OGW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF456GRS bed narrowPeak optimal idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF460AIN, ENCFF563ZYA, ENCFF604LSK 1353644 ENCODE Processing Pipeline 932e0d57da9a823c1dcdabd472985703 https://www.encodeproject.org/files/ENCFF456GRS/@@download/ENCFF456GRS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460AIN bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG 5820931 ENCODE Processing Pipeline 9da03b794dee6a2a7f582a91342996fa https://www.encodeproject.org/files/ENCFF460AIN/@@download/ENCFF460AIN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF380GGS bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF604LSK 11488746 ENCODE Processing Pipeline 291a7470c3354ed641497d75847191fb https://www.encodeproject.org/files/ENCFF380GGS/@@download/ENCFF380GGS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169ZUG bed narrowPeak conservative idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF460AIN, ENCFF563ZYA, ENCFF604LSK 1268499 ENCODE Processing Pipeline 414423716adc32ba3dd1aa47c43242e7 https://www.encodeproject.org/files/ENCFF169ZUG/@@download/ENCFF169ZUG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF484CLC bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF460AIN 11793849 ENCODE Processing Pipeline 84cd9fe88dfd24582a3a1beb5cddb7c3 https://www.encodeproject.org/files/ENCFF484CLC/@@download/ENCFF484CLC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF829XSC bigBed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF563ZYA 12070850 ENCODE Processing Pipeline c2cf50bc6930d9158c0501082970bc92 https://www.encodeproject.org/files/ENCFF829XSC/@@download/ENCFF829XSC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699SHK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF456GRS 2152380 ENCODE Processing Pipeline caafd27473d30dcb4080de30a2806062 https://www.encodeproject.org/files/ENCFF699SHK/@@download/ENCFF699SHK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962YIK fastq reads ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF692XUJ 3349847127 Michael Snyder, Stanford e2a1912ecf0882b9771fc46f55438740 SRA:SRR6213262 https://www.encodeproject.org/files/ENCFF962YIK/@@download/ENCFF962YIK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF692XUJ fastq reads ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF962YIK 3399354864 Michael Snyder, Stanford a4f7e0f07f78581c0496b22d89239bd1 SRA:SRR6213262 https://www.encodeproject.org/files/ENCFF692XUJ/@@download/ENCFF692XUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF574OQO fastq reads ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF352EJH 3475177378 Michael Snyder, Stanford a3b18b9c7704038053598e18eb3ff3a5 SRA:SRR6213263 https://www.encodeproject.org/files/ENCFF574OQO/@@download/ENCFF574OQO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF352EJH fastq reads ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF574OQO 3526716792 Michael Snyder, Stanford 0c50d38b6145d9da76b1de40654991f1 SRA:SRR6213263 https://www.encodeproject.org/files/ENCFF352EJH/@@download/ENCFF352EJH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF109BRV bam unfiltered alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF692XUJ, ENCFF962YIK 6647022513 ENCODE Processing Pipeline f92ddd60dbfb4d2863dd19311b7b1d4f https://www.encodeproject.org/files/ENCFF109BRV/@@download/ENCFF109BRV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF365SJA bam unfiltered alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF352EJH, ENCFF574OQO, ENCFF807MUK 6930745344 ENCODE Processing Pipeline 0f239140ff818552931f357d3b01d5f3 https://www.encodeproject.org/files/ENCFF365SJA/@@download/ENCFF365SJA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF180XGD bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF352EJH, ENCFF574OQO, ENCFF807MUK 6008288174 ENCODE Processing Pipeline 55b7afcf39d165aa55ba45318a5ecab0 https://www.encodeproject.org/files/ENCFF180XGD/@@download/ENCFF180XGD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF018KGA bam unfiltered alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF352EJH, ENCFF574OQO, ENCFF643CGH 6938342625 ENCODE Processing Pipeline 57e13849fa3dfd4b8e164e654c462e7c https://www.encodeproject.org/files/ENCFF018KGA/@@download/ENCFF018KGA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF351NUJ bam unfiltered alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF692XUJ, ENCFF807MUK, ENCFF962YIK 6641837230 ENCODE Processing Pipeline b21bf3a15c70fcaad9720492d5280b29 https://www.encodeproject.org/files/ENCFF351NUJ/@@download/ENCFF351NUJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF602FGJ bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF692XUJ, ENCFF962YIK 5680891486 ENCODE Processing Pipeline dd88f381da6ee0812f4319428cebf22b https://www.encodeproject.org/files/ENCFF602FGJ/@@download/ENCFF602FGJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF871CIH bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF352EJH, ENCFF574OQO, ENCFF643CGH 6012422075 ENCODE Processing Pipeline de59dac4082e1673d6691fc4ca53b310 https://www.encodeproject.org/files/ENCFF871CIH/@@download/ENCFF871CIH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF787ENP bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF692XUJ, ENCFF807MUK, ENCFF962YIK 5677353593 ENCODE Processing Pipeline 86c679940b58f30a2be1d0856a516764 https://www.encodeproject.org/files/ENCFF787ENP/@@download/ENCFF787ENP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF525TTL bigWig signal p-value ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF787ENP 1405909411 ENCODE Processing Pipeline 6f823aa03480726f0a5482381e31a731 https://www.encodeproject.org/files/ENCFF525TTL/@@download/ENCFF525TTL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF333HCN bigWig signal p-value ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF180XGD 1460418297 ENCODE Processing Pipeline f30f0998f73efb46f182facec685e1bb https://www.encodeproject.org/files/ENCFF333HCN/@@download/ENCFF333HCN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF501ULS bigWig fold change over control ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF787ENP 1487492912 ENCODE Processing Pipeline 93dcfd1699a2221689df3776728ae609 https://www.encodeproject.org/files/ENCFF501ULS/@@download/ENCFF501ULS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF848GIU bigWig signal p-value ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF180XGD, ENCFF787ENP 1920221397 ENCODE Processing Pipeline 55032be618d600f4fe8f0a44d9316914 https://www.encodeproject.org/files/ENCFF848GIU/@@download/ENCFF848GIU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF446CUD bigWig fold change over control ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF180XGD 1561848252 ENCODE Processing Pipeline 45dc9194793f264d1b6c495a9cfc99de https://www.encodeproject.org/files/ENCFF446CUD/@@download/ENCFF446CUD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF527VLA bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF787ENP 7018720 ENCODE Processing Pipeline 85b942388f9ba5ba3c4d6bb0be09366e https://www.encodeproject.org/files/ENCFF527VLA/@@download/ENCFF527VLA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF521IBT bed narrowPeak conservative idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF527VLA, ENCFF886CWH, ENCFF949SRY 1138092 ENCODE Processing Pipeline dbf67f7769e3837b8d15245fb972ffea https://www.encodeproject.org/files/ENCFF521IBT/@@download/ENCFF521IBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF099GVU bigBed narrowPeak optimal idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF170OWD 2058318 ENCODE Processing Pipeline 3780d4046ff723825fcf19387d6633c1 https://www.encodeproject.org/files/ENCFF099GVU/@@download/ENCFF099GVU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF364KKZ bigWig fold change over control ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF180XGD, ENCFF787ENP 2120479945 ENCODE Processing Pipeline 9b8cd38e1b91ec730e59a7deb770c0c5 https://www.encodeproject.org/files/ENCFF364KKZ/@@download/ENCFF364KKZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF708YTG bigBed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF527VLA 13207147 ENCODE Processing Pipeline 59ad9c4b0bbdea18d90baf9c405499e9 https://www.encodeproject.org/files/ENCFF708YTG/@@download/ENCFF708YTG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF705ENL bigBed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF949SRY 13334741 ENCODE Processing Pipeline d560e5fa13bc7ca7ee6fd1f5ad564764 https://www.encodeproject.org/files/ENCFF705ENL/@@download/ENCFF705ENL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF660FUH bigBed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF886CWH 13381326 ENCODE Processing Pipeline 2b34e384ccb3a17cf17abd0fa6a8a7b3 https://www.encodeproject.org/files/ENCFF660FUH/@@download/ENCFF660FUH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF886CWH bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF180XGD 7130937 ENCODE Processing Pipeline 1371b95a305cfd36e9fdafedd5e16855 https://www.encodeproject.org/files/ENCFF886CWH/@@download/ENCFF886CWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF949SRY bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF180XGD, ENCFF787ENP 7188408 ENCODE Processing Pipeline bda5a95f302058a2e9bbfd22a17ce120 https://www.encodeproject.org/files/ENCFF949SRY/@@download/ENCFF949SRY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF771FXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF521IBT 2006307 ENCODE Processing Pipeline 057c5c3282e515b07897ad2ad57c6c4d https://www.encodeproject.org/files/ENCFF771FXZ/@@download/ENCFF771FXZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF170OWD bed narrowPeak optimal idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF527VLA, ENCFF886CWH, ENCFF949SRY 1172644 ENCODE Processing Pipeline 292ab8765c6e776f8f8ddc7e4a36dd55 https://www.encodeproject.org/files/ENCFF170OWD/@@download/ENCFF170OWD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF885CLI bigWig signal p-value ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF602FGJ 1420862055 ENCODE Processing Pipeline 914bc935aaf02953d55969d66fd8ddc2 https://www.encodeproject.org/files/ENCFF885CLI/@@download/ENCFF885CLI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF063SLD bigWig signal p-value ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF871CIH 1426588410 ENCODE Processing Pipeline e2839c04320eebd54f0adf32bc89b67e https://www.encodeproject.org/files/ENCFF063SLD/@@download/ENCFF063SLD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF305SVH bigWig signal p-value ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF602FGJ, ENCFF871CIH 1886035033 ENCODE Processing Pipeline c240dad6e3339f90e464868e01197465 https://www.encodeproject.org/files/ENCFF305SVH/@@download/ENCFF305SVH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF752BLP bigWig fold change over control ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF602FGJ 1491895717 ENCODE Processing Pipeline f2bec32fd8a7f182499302a4f7987c1f https://www.encodeproject.org/files/ENCFF752BLP/@@download/ENCFF752BLP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF987VVP bigWig fold change over control ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF871CIH 1566733062 ENCODE Processing Pipeline f03be64c2fad74b61df5499c6cb54dab https://www.encodeproject.org/files/ENCFF987VVP/@@download/ENCFF987VVP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF934EVF bigWig fold change over control ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF602FGJ, ENCFF871CIH 2084566363 ENCODE Processing Pipeline fbef87a3cdbf8fc3e184ffcf974e40e4 https://www.encodeproject.org/files/ENCFF934EVF/@@download/ENCFF934EVF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF795HTV bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF602FGJ, ENCFF871CIH 7299943 ENCODE Processing Pipeline fdcfc6ceef26d1d98c48c698d298981b https://www.encodeproject.org/files/ENCFF795HTV/@@download/ENCFF795HTV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF989EPZ bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF602FGJ 7118525 ENCODE Processing Pipeline 1f8a026e64d445f81e7726e496577742 https://www.encodeproject.org/files/ENCFF989EPZ/@@download/ENCFF989EPZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF527MVO bigBed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF989EPZ 13338726 ENCODE Processing Pipeline 9b2d25932d23367e2cf9fcaa8fdea0dd https://www.encodeproject.org/files/ENCFF527MVO/@@download/ENCFF527MVO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF663WST bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF871CIH 7085554 ENCODE Processing Pipeline 864211567836f3d8a81634e9e342b484 https://www.encodeproject.org/files/ENCFF663WST/@@download/ENCFF663WST.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF887LDA bigBed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF663WST 13336781 ENCODE Processing Pipeline e6e056be54ee88f0421962d480b0f4c2 https://www.encodeproject.org/files/ENCFF887LDA/@@download/ENCFF887LDA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF280WXR bigBed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF795HTV 13479573 ENCODE Processing Pipeline 1e80a41c2cda57231ac8b34aae4f3853 https://www.encodeproject.org/files/ENCFF280WXR/@@download/ENCFF280WXR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF175UAG bed narrowPeak optimal idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF663WST, ENCFF795HTV, ENCFF989EPZ 1204993 ENCODE Processing Pipeline abfcd75d01f1ff619d807ebc72eee41a https://www.encodeproject.org/files/ENCFF175UAG/@@download/ENCFF175UAG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF451TLK bigBed narrowPeak optimal idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF175UAG 2662749 ENCODE Processing Pipeline 3691bf8c5dd77818c5842ecd15754af7 https://www.encodeproject.org/files/ENCFF451TLK/@@download/ENCFF451TLK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF887HRY bed narrowPeak conservative idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF663WST, ENCFF795HTV, ENCFF989EPZ 1164365 ENCODE Processing Pipeline 14ebe7687e6aab947accfb156b2ca6f1 https://www.encodeproject.org/files/ENCFF887HRY/@@download/ENCFF887HRY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF992KLV bigBed narrowPeak conservative idr thresholded peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF887HRY 2583113 ENCODE Processing Pipeline aac6f9f585592d8b453a5bc6f79cfd12 https://www.encodeproject.org/files/ENCFF992KLV/@@download/ENCFF992KLV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF473RRN bam unfiltered alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 100 ENCFF807MUK, ENCFF931UCZ, ENCFF965QBT 7710926707 ENCODE Processing Pipeline 87eec8e3f9dfed5763239742a2fcf232 https://www.encodeproject.org/files/ENCFF473RRN/@@download/ENCFF473RRN.bam hg19 released ENCFF004EVN bam unfiltered alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 100 ENCFF294CYY, ENCFF546WQO, ENCFF807MUK 6845647226 ENCODE Processing Pipeline 71319e58e435ed78aa70806fbe1e5660 https://www.encodeproject.org/files/ENCFF004EVN/@@download/ENCFF004EVN.bam hg19 released ENCFF546WQO fastq reads ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 1 100 paired-ended 1 ENCFF294CYY 3209337166 Michael Snyder, Stanford 9cc8fcc6e278ca61c5135bc5967f8ab4 SRA:SRR5111519 https://www.encodeproject.org/files/ENCFF546WQO/@@download/ENCFF546WQO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF931UCZ fastq reads ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 1 100 paired-ended 1 ENCFF965QBT 3533125859 Michael Snyder, Stanford 0022f097a9ca22fde3beea3ff3f6a892 SRA:SRR5111518 https://www.encodeproject.org/files/ENCFF931UCZ/@@download/ENCFF931UCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF965QBT fastq reads ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 1 100 paired-ended 2 ENCFF931UCZ 3593380186 Michael Snyder, Stanford e7dcf6973402d334d963b8f11e1e14ba SRA:SRR5111518 https://www.encodeproject.org/files/ENCFF965QBT/@@download/ENCFF965QBT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF294CYY fastq reads ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 1 100 paired-ended 2 ENCFF546WQO 3271327121 Michael Snyder, Stanford a5936e4a68671099d44d434fa7adfad0 SRA:SRR5111519 https://www.encodeproject.org/files/ENCFF294CYY/@@download/ENCFF294CYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF967XYK bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 100 ENCFF294CYY, ENCFF546WQO, ENCFF807MUK 5781604052 ENCODE Processing Pipeline a4b90b1706ebd6048e869e36b0866adf https://www.encodeproject.org/files/ENCFF967XYK/@@download/ENCFF967XYK.bam hg19 released ENCFF951UTH bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 100 ENCFF807MUK, ENCFF931UCZ, ENCFF965QBT 6969495186 ENCODE Processing Pipeline 36411d45f3c050fd2771f5c95b160d57 https://www.encodeproject.org/files/ENCFF951UTH/@@download/ENCFF951UTH.bam hg19 released ENCFF266VXO bigBed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF980UAQ 13376718 ENCODE Processing Pipeline 3d3cbee877086c36a47a4440fd6253b0 https://www.encodeproject.org/files/ENCFF266VXO/@@download/ENCFF266VXO.bigBed hg19 released ENCFF282CAH bigWig fold change over control ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH, ENCFF967XYK 2487819241 ENCODE Processing Pipeline f8fe9eb99ee108bce43b547fe5f5a8ab https://www.encodeproject.org/files/ENCFF282CAH/@@download/ENCFF282CAH.bigWig hg19 released ENCFF785AFW bigBed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF186JNG 13310206 ENCODE Processing Pipeline 667a3bb2d30a7d2e9579b67e4191dad0 https://www.encodeproject.org/files/ENCFF785AFW/@@download/ENCFF785AFW.bigBed hg19 released ENCFF014KVJ bigWig fold change over control ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH 1942603305 ENCODE Processing Pipeline ed33d82c373989110efa68cf1ed41d89 https://www.encodeproject.org/files/ENCFF014KVJ/@@download/ENCFF014KVJ.bigWig hg19 released ENCFF007DDA bigWig signal p-value ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF581ZJL, ENCFF967XYK 1217428314 ENCODE Processing Pipeline d69c58eb8de352ffdb379280ec1c180b https://www.encodeproject.org/files/ENCFF007DDA/@@download/ENCFF007DDA.bigWig hg19 released ENCFF186MHH bigWig signal p-value ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH, ENCFF967XYK 2367537609 ENCODE Processing Pipeline f55b75868ad6b0325f0f9f8cacd3f0c9 https://www.encodeproject.org/files/ENCFF186MHH/@@download/ENCFF186MHH.bigWig hg19 released ENCFF651RGN bigBed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF420MBN 11322648 ENCODE Processing Pipeline 9c7412568db39cd3436cb2cd5b7d9a4f https://www.encodeproject.org/files/ENCFF651RGN/@@download/ENCFF651RGN.bigBed hg19 released ENCFF626LDU bigWig signal p-value ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH 1961852190 ENCODE Processing Pipeline e144d0568eb5a83edcb3b4617456d664 https://www.encodeproject.org/files/ENCFF626LDU/@@download/ENCFF626LDU.bigWig hg19 released ENCFF289WJI bigWig fold change over control ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF581ZJL, ENCFF967XYK 1401236885 ENCODE Processing Pipeline 45542e8738a2f308b73c6960f06bdf5c https://www.encodeproject.org/files/ENCFF289WJI/@@download/ENCFF289WJI.bigWig hg19 released ENCFF420MBN bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH 7005846 ENCODE Processing Pipeline 9105af60d97e15745da580d902c1dbe1 https://www.encodeproject.org/files/ENCFF420MBN/@@download/ENCFF420MBN.bed.gz hg19 released ENCFF980UAQ bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF581ZJL, ENCFF967XYK 6886863 ENCODE Processing Pipeline 4451bcb37eb9571933343a709a60e8de https://www.encodeproject.org/files/ENCFF980UAQ/@@download/ENCFF980UAQ.bed.gz hg19 released ENCFF186JNG bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH, ENCFF967XYK 7260274 ENCODE Processing Pipeline 86c6856a23182b2bae130377bc710876 https://www.encodeproject.org/files/ENCFF186JNG/@@download/ENCFF186JNG.bed.gz hg19 released ENCFF593RXC bam unfiltered alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 100 ENCFF643CGH, ENCFF931UCZ, ENCFF965QBT 7723988763 ENCODE Processing Pipeline 8bf2f457e6279c3e65c378f1c845c93c https://www.encodeproject.org/files/ENCFF593RXC/@@download/ENCFF593RXC.bam GRCh38 released ENCFF707ZKL bam unfiltered alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 100 ENCFF294CYY, ENCFF546WQO, ENCFF643CGH 6852447771 ENCODE Processing Pipeline 8ff5131106f3dda035ff2f60e95865c0 https://www.encodeproject.org/files/ENCFF707ZKL/@@download/ENCFF707ZKL.bam GRCh38 released ENCFF686ZIH bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 100 ENCFF294CYY, ENCFF546WQO, ENCFF643CGH 5782004581 ENCODE Processing Pipeline 7df3f17d547c04c501f51f9a818a12a0 https://www.encodeproject.org/files/ENCFF686ZIH/@@download/ENCFF686ZIH.bam GRCh38 released ENCFF786MHJ bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 100 ENCFF643CGH, ENCFF931UCZ, ENCFF965QBT 6972290190 ENCODE Processing Pipeline cb4f3e8695e9b325732b116d7af049a6 https://www.encodeproject.org/files/ENCFF786MHJ/@@download/ENCFF786MHJ.bam GRCh38 released ENCFF502WNY bigWig signal p-value ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF227IZS, ENCFF786MHJ, ENCFF910IKB 1687954327 ENCODE Processing Pipeline a7028a879c6e969419c79069f0d0ce75 https://www.encodeproject.org/files/ENCFF502WNY/@@download/ENCFF502WNY.bigWig GRCh38 released ENCFF340MBA bigWig signal p-value ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF686ZIH, ENCFF910IKB 1214995286 ENCODE Processing Pipeline 7483bf4eb400ae51bf5e4dff4ac7900d https://www.encodeproject.org/files/ENCFF340MBA/@@download/ENCFF340MBA.bigWig GRCh38 released ENCFF886LIA bigWig signal p-value ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF227IZS, ENCFF686ZIH, ENCFF786MHJ, ENCFF910IKB 1977064999 ENCODE Processing Pipeline 16429cd4eb73d2f6e4e53402c1bb5c89 https://www.encodeproject.org/files/ENCFF886LIA/@@download/ENCFF886LIA.bigWig GRCh38 released ENCFF695WYU bigWig fold change over control ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF227IZS, ENCFF786MHJ, ENCFF910IKB 1947883544 ENCODE Processing Pipeline a1ff65a4cfe3aad3f5415f0e86f2578d https://www.encodeproject.org/files/ENCFF695WYU/@@download/ENCFF695WYU.bigWig GRCh38 released ENCFF661WTR bigWig fold change over control ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF686ZIH, ENCFF910IKB 1412589791 ENCODE Processing Pipeline 486dd83cd2f894a234848963a7a0f56c https://www.encodeproject.org/files/ENCFF661WTR/@@download/ENCFF661WTR.bigWig GRCh38 released ENCFF468PJO bigWig fold change over control ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF227IZS, ENCFF686ZIH, ENCFF786MHJ, ENCFF910IKB 2491542931 ENCODE Processing Pipeline 5902e33795cc75f410f56c8eabb48d9c https://www.encodeproject.org/files/ENCFF468PJO/@@download/ENCFF468PJO.bigWig GRCh38 released ENCFF028FED bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF227IZS, ENCFF786MHJ, ENCFF910IKB 6938291 ENCODE Processing Pipeline 38d617012fceaa131e30058d7dc5b6d5 https://www.encodeproject.org/files/ENCFF028FED/@@download/ENCFF028FED.bed.gz GRCh38 released ENCFF906TXC bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF227IZS, ENCFF686ZIH, ENCFF786MHJ, ENCFF910IKB 7260939 ENCODE Processing Pipeline ca2738ca9624452db3f5f39dbe24b11b https://www.encodeproject.org/files/ENCFF906TXC/@@download/ENCFF906TXC.bed.gz GRCh38 released ENCFF674JOQ bigBed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF028FED 11342751 ENCODE Processing Pipeline 9cefdd276293232136a853f74d2385e4 https://www.encodeproject.org/files/ENCFF674JOQ/@@download/ENCFF674JOQ.bigBed GRCh38 released ENCFF319DVI bigBed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF906TXC 13326776 ENCODE Processing Pipeline 5bf6840bbbe6314d961c17f991fb3dec https://www.encodeproject.org/files/ENCFF319DVI/@@download/ENCFF319DVI.bigBed GRCh38 released ENCFF723JDW bed narrowPeak optimal idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF028FED, ENCFF419RSJ, ENCFF906TXC, ENCFF987AHA 336190 ENCODE Processing Pipeline 22f8e676daeb979e726fc1f4d8bcdab8 https://www.encodeproject.org/files/ENCFF723JDW/@@download/ENCFF723JDW.bed.gz GRCh38 released ENCFF153GWB bigBed narrowPeak optimal idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF723JDW 604713 ENCODE Processing Pipeline 0b2baa6f70f1990028d18466351aa01b https://www.encodeproject.org/files/ENCFF153GWB/@@download/ENCFF153GWB.bigBed GRCh38 released ENCFF987AHA bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF686ZIH, ENCFF910IKB 6779705 ENCODE Processing Pipeline d5fb3ecd68c46f26c97a273b1dbcbdd7 https://www.encodeproject.org/files/ENCFF987AHA/@@download/ENCFF987AHA.bed.gz GRCh38 released ENCFF941XDH bed narrowPeak conservative idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF028FED, ENCFF419RSJ, ENCFF906TXC, ENCFF987AHA 236055 ENCODE Processing Pipeline 1a5ed1ab7cd79a64a4142eefd90aabf2 https://www.encodeproject.org/files/ENCFF941XDH/@@download/ENCFF941XDH.bed.gz GRCh38 released ENCFF951CTG bigBed narrowPeak conservative idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF941XDH 465341 ENCODE Processing Pipeline 938a57e83a01d4673945295393712009 https://www.encodeproject.org/files/ENCFF951CTG/@@download/ENCFF951CTG.bigBed GRCh38 released ENCFF865ODE bigBed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 ENCFF987AHA 13390319 ENCODE Processing Pipeline b42b9da38d0c3a43c9f899b047eb7f98 https://www.encodeproject.org/files/ENCFF865ODE/@@download/ENCFF865ODE.bigBed GRCh38 released ENCFF933ZIS bed narrowPeak conservative idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF001TDO, ENCFF186JNG, ENCFF420MBN, ENCFF980UAQ 194534 ENCODE Processing Pipeline 0ac55263e7087ce526ce18e15369eebb https://www.encodeproject.org/files/ENCFF933ZIS/@@download/ENCFF933ZIS.bed.gz hg19 released ENCFF781BNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF933ZIS 405744 ENCODE Processing Pipeline b131e6737a983fad054139e5e1402877 https://www.encodeproject.org/files/ENCFF781BNQ/@@download/ENCFF781BNQ.bigBed hg19 released ENCFF238MYM bed narrowPeak optimal idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF001TDO, ENCFF186JNG, ENCFF420MBN, ENCFF980UAQ 280876 ENCODE Processing Pipeline e3c5e27d52c123cb162294504181685d https://www.encodeproject.org/files/ENCFF238MYM/@@download/ENCFF238MYM.bed.gz hg19 released ENCFF013NFH bigBed narrowPeak optimal idr thresholded peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2, 3 ENCFF238MYM 521212 ENCODE Processing Pipeline 43b79a9531c32ae7070b4f95f6f140f9 https://www.encodeproject.org/files/ENCFF013NFH/@@download/ENCFF013NFH.bigBed hg19 released ENCFF000YLB bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VMW 2497904 Michael Snyder, Stanford 691cac2a888e037b5cb7b5a5e26da56c https://www.encodeproject.org/files/ENCFF000YLB/@@download/ENCFF000YLB.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YLC fastq reads ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 365553503 Michael Snyder, Stanford 54ef4dc9f1bdb7dda35dd7e1a3a95a52 https://www.encodeproject.org/files/ENCFF000YLC/@@download/ENCFF000YLC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YLE bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 436052157 Michael Snyder, Stanford 4621ce73ff075553a8554756a2e51e80 https://www.encodeproject.org/files/ENCFF000YLE/@@download/ENCFF000YLE.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YLH fastq reads ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1154048136 Michael Snyder, Stanford b8665c4d4e0579ce56def7dabbf2943d https://www.encodeproject.org/files/ENCFF000YLH/@@download/ENCFF000YLH.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YLJ bigWig signal ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 397398114 Michael Snyder, Stanford 6f29934b54504d8443eddd265b8ec87e https://www.encodeproject.org/files/ENCFF000YLJ/@@download/ENCFF000YLJ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YLK bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 596830064 Michael Snyder, Stanford 28e57f62bf6cf3c9d303bddf4a473d15 https://www.encodeproject.org/files/ENCFF000YLK/@@download/ENCFF000YLK.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VMW bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 983518 Michael Snyder, Stanford 46643afa087886801b6ca67ad4b89878 https://www.encodeproject.org/files/ENCFF001VMW/@@download/ENCFF001VMW.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CWJ bed narrowPeak optimal idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 157869 ENCODE Consortium Analysis Working Group 00c00dfe8c61c384b777f1d95c60fc29 https://www.encodeproject.org/files/ENCFF002CWJ/@@download/ENCFF002CWJ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YLF fastq reads ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 500203230 Michael Snyder, Stanford 1fb07ac250e12878927439d84e32ca35 https://www.encodeproject.org/files/ENCFF000YLF/@@download/ENCFF000YLF.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF761MFF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CWJ 420251 ENCODE Consortium 3576668f072c369c979522ad101c1d65 https://www.encodeproject.org/files/ENCFF761MFF/@@download/ENCFF761MFF.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF694BOP bam unfiltered alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLH, ENCFF643CGH 1330119239 ENCODE Processing Pipeline d088c5f170c8788630de0d514ed130a5 https://www.encodeproject.org/files/ENCFF694BOP/@@download/ENCFF694BOP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF112DFJ bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLH, ENCFF643CGH 945456611 ENCODE Processing Pipeline 61979b286d4a7e924d1ec25d2e8da580 https://www.encodeproject.org/files/ENCFF112DFJ/@@download/ENCFF112DFJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF796EJK bam unfiltered alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLC, ENCFF000YLF, ENCFF643CGH 1009944891 ENCODE Processing Pipeline daff5fce77f02f6e8a0575cf0c832cc4 https://www.encodeproject.org/files/ENCFF796EJK/@@download/ENCFF796EJK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF623TAD bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLC, ENCFF000YLF, ENCFF643CGH 663638354 ENCODE Processing Pipeline 86841906a22861ba7da51f783a450c55 https://www.encodeproject.org/files/ENCFF623TAD/@@download/ENCFF623TAD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF074CIT bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLH, ENCFF807MUK 946050222 ENCODE Processing Pipeline 12b645184f9adeff5b845ff3bc3ad101 https://www.encodeproject.org/files/ENCFF074CIT/@@download/ENCFF074CIT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF918NIR bam unfiltered alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLH, ENCFF807MUK 1324324830 ENCODE Processing Pipeline 20db2255b81dba7962f0191d46e0e387 https://www.encodeproject.org/files/ENCFF918NIR/@@download/ENCFF918NIR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF899INX bam unfiltered alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLC, ENCFF000YLF, ENCFF807MUK 1005642238 ENCODE Processing Pipeline 18b1d860694ed44c55691f0b09481bf3 https://www.encodeproject.org/files/ENCFF899INX/@@download/ENCFF899INX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF072HKU bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLC, ENCFF000YLF, ENCFF807MUK 664081610 ENCODE Processing Pipeline d0a1056f3968d4f8ac796a8c8de378e9 https://www.encodeproject.org/files/ENCFF072HKU/@@download/ENCFF072HKU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614PTK bigWig signal p-value ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF623TAD 469835078 ENCODE Processing Pipeline 2454031c6ce7daa4c1640ed9c92a9c54 https://www.encodeproject.org/files/ENCFF614PTK/@@download/ENCFF614PTK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF925UER bigWig signal p-value ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF112DFJ 511160066 ENCODE Processing Pipeline 4ecb5efb7f54c29499eb858a56a7d26f https://www.encodeproject.org/files/ENCFF925UER/@@download/ENCFF925UER.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF781QSL bigWig signal p-value ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF112DFJ, ENCFF623TAD 554596312 ENCODE Processing Pipeline 0d5c164ef2a1ec56f7b0cd7f0c567f57 https://www.encodeproject.org/files/ENCFF781QSL/@@download/ENCFF781QSL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF033QIR bigWig fold change over control ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF623TAD 343610516 ENCODE Processing Pipeline 9eed16d3cd62c53b15fe9f9b78201902 https://www.encodeproject.org/files/ENCFF033QIR/@@download/ENCFF033QIR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976DAC bigWig fold change over control ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF112DFJ, ENCFF623TAD 687270901 ENCODE Processing Pipeline 69c3680005a2137b849fc4eaeafc6338 https://www.encodeproject.org/files/ENCFF976DAC/@@download/ENCFF976DAC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF917EAJ bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF623TAD 5045652 ENCODE Processing Pipeline e017ddfe84d8fd0eaaa29d0314c9613a https://www.encodeproject.org/files/ENCFF917EAJ/@@download/ENCFF917EAJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527JDM bigWig fold change over control ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF112DFJ 475049208 ENCODE Processing Pipeline 2fa75fcafe8a031f85bfb60c2a934a2d https://www.encodeproject.org/files/ENCFF527JDM/@@download/ENCFF527JDM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF470SPH bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF112DFJ 5349337 ENCODE Processing Pipeline de0b92c1aa9873187b949f6bd88eaa19 https://www.encodeproject.org/files/ENCFF470SPH/@@download/ENCFF470SPH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF234JEE bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF470SPH 13247545 ENCODE Processing Pipeline 64dd78f16dcf47467d078f42e7fee55b https://www.encodeproject.org/files/ENCFF234JEE/@@download/ENCFF234JEE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF389ISM bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF112DFJ, ENCFF623TAD 2757610 ENCODE Processing Pipeline e18493416146daae1fe90e2c072441d0 https://www.encodeproject.org/files/ENCFF389ISM/@@download/ENCFF389ISM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF170JJV bed narrowPeak conservative idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF389ISM, ENCFF419RSJ, ENCFF470SPH, ENCFF917EAJ 90756 ENCODE Processing Pipeline d4e3a50fecac54e9dc9f159b71b4e656 https://www.encodeproject.org/files/ENCFF170JJV/@@download/ENCFF170JJV.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF985NRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF968SUH 275778 ENCODE Processing Pipeline 7696c1922ce8ec87c0e9293b24ad8709 https://www.encodeproject.org/files/ENCFF985NRC/@@download/ENCFF985NRC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF609HGE bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF917EAJ 10795248 ENCODE Processing Pipeline abbe4bb0623c34b345a3f42a95b366f2 https://www.encodeproject.org/files/ENCFF609HGE/@@download/ENCFF609HGE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339APP bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF389ISM 5759796 ENCODE Processing Pipeline 3b1400efdfd2205605da14a915ae8e76 https://www.encodeproject.org/files/ENCFF339APP/@@download/ENCFF339APP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF815YWU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF170JJV 226609 ENCODE Processing Pipeline a6ed40f36e9e601a12b71e6566230e53 https://www.encodeproject.org/files/ENCFF815YWU/@@download/ENCFF815YWU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF968SUH bed narrowPeak optimal idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF389ISM, ENCFF419RSJ, ENCFF470SPH, ENCFF917EAJ 123152 ENCODE Processing Pipeline 1481dcd0e4051afd7bbabee2758f0e75 https://www.encodeproject.org/files/ENCFF968SUH/@@download/ENCFF968SUH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF368WWT bigWig signal p-value ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF072HKU, ENCFF074CIT, ENCFF710NTS 554873400 ENCODE Processing Pipeline 0b352a7b246179b9634eeb3378a6a125 https://www.encodeproject.org/files/ENCFF368WWT/@@download/ENCFF368WWT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF454YNC bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF959MXK 10790842 ENCODE Processing Pipeline 206db74fc38efafc4ce4f60270eadde2 https://www.encodeproject.org/files/ENCFF454YNC/@@download/ENCFF454YNC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF484CKD bed narrowPeak optimal idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF477PXF, ENCFF620JKI, ENCFF959MXK 122282 ENCODE Processing Pipeline d8f4094f757d447fef0084be8473dbd0 https://www.encodeproject.org/files/ENCFF484CKD/@@download/ENCFF484CKD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF477PXF bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF072HKU, ENCFF074CIT, ENCFF710NTS 2763528 ENCODE Processing Pipeline 3998d6006256ccd165ab9adacd19d4d3 https://www.encodeproject.org/files/ENCFF477PXF/@@download/ENCFF477PXF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF054TMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF796XFQ 223940 ENCODE Processing Pipeline b749b5e9b137a6f82271acca91c43745 https://www.encodeproject.org/files/ENCFF054TMM/@@download/ENCFF054TMM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF744ZLX bigWig signal p-value ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF072HKU, ENCFF710NTS 440145621 ENCODE Processing Pipeline 33aede4fd947525b6d111bb1751fc586 https://www.encodeproject.org/files/ENCFF744ZLX/@@download/ENCFF744ZLX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595EMI bigWig fold change over control ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF072HKU, ENCFF710NTS 341883160 ENCODE Processing Pipeline c1fe31bd0b543bfb385de060882c22f8 https://www.encodeproject.org/files/ENCFF595EMI/@@download/ENCFF595EMI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550TDY bigWig fold change over control ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF072HKU, ENCFF074CIT, ENCFF710NTS 688350167 ENCODE Processing Pipeline 99e077c8c2e5e9d2aca5e15860dd7323 https://www.encodeproject.org/files/ENCFF550TDY/@@download/ENCFF550TDY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620JKI bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF074CIT, ENCFF710NTS 5345789 ENCODE Processing Pipeline cc2c46c0e7f74d7af9a17d5c30f9b684 https://www.encodeproject.org/files/ENCFF620JKI/@@download/ENCFF620JKI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF075ISL bigWig signal p-value ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF074CIT, ENCFF710NTS 502326183 ENCODE Processing Pipeline 85e4015f03292b20aff2a625ae564cf8 https://www.encodeproject.org/files/ENCFF075ISL/@@download/ENCFF075ISL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF214EHD bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF620JKI 13223637 ENCODE Processing Pipeline c0aacfc7f3252bd9ccb28c86150b41b1 https://www.encodeproject.org/files/ENCFF214EHD/@@download/ENCFF214EHD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF796XFQ bed narrowPeak conservative idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF477PXF, ENCFF620JKI, ENCFF959MXK 89380 ENCODE Processing Pipeline f612b1dc9f4e69557585e3fc2006316d https://www.encodeproject.org/files/ENCFF796XFQ/@@download/ENCFF796XFQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF920YXS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF484CKD 273920 ENCODE Processing Pipeline 07ca33ab1a93797a74cbc2451f3c06d6 https://www.encodeproject.org/files/ENCFF920YXS/@@download/ENCFF920YXS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF280RJQ bigWig fold change over control ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF074CIT, ENCFF710NTS 475949168 ENCODE Processing Pipeline d37b63105a11d1067babfd4ec7cd4508 https://www.encodeproject.org/files/ENCFF280RJQ/@@download/ENCFF280RJQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF959MXK bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF072HKU, ENCFF710NTS 5051372 ENCODE Processing Pipeline 0ad30b28ec7b893683aa702b3ec92aab https://www.encodeproject.org/files/ENCFF959MXK/@@download/ENCFF959MXK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF249SOZ bigBed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477PXF 5754459 ENCODE Processing Pipeline 06db449b70c077f50b266dad04d188d4 https://www.encodeproject.org/files/ENCFF249SOZ/@@download/ENCFF249SOZ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUX bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHC 338017 Michael Snyder, Stanford c928a997bd9824a9fb346b1b986dbbff https://www.encodeproject.org/files/ENCFF000WUX/@@download/ENCFF000WUX.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUY bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WVQ 412165221 Michael Snyder, Stanford c9967fd6e17adb1386417753119a59c8 https://www.encodeproject.org/files/ENCFF000WUY/@@download/ENCFF000WUY.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUZ bigWig signal ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 404306345 Michael Snyder, Stanford b865aa494faac3b021b3fb5b7ea71b8d https://www.encodeproject.org/files/ENCFF000WUZ/@@download/ENCFF000WUZ.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WVA bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WVR 654523097 Michael Snyder, Stanford 22b452b661bcf04003829b8e95a8f066 https://www.encodeproject.org/files/ENCFF000WVA/@@download/ENCFF000WVA.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVQ fastq reads ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 981851880 Michael Snyder, Stanford ca3f9cf2bf591cee0681d869086ea329 https://www.encodeproject.org/files/ENCFF000WVQ/@@download/ENCFF000WVQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVR fastq reads ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1376677768 Michael Snyder, Stanford 03afa693c3fc72fa83293cb2089fe074 https://www.encodeproject.org/files/ENCFF000WVR/@@download/ENCFF000WVR.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VHC bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 164058 Michael Snyder, Stanford cf5aaf241a78fd266c0a7ca1b247cc6f https://www.encodeproject.org/files/ENCFF001VHC/@@download/ENCFF001VHC.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CRE bed narrowPeak optimal idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 45540 ENCODE Consortium Analysis Working Group 00ef9b64eaa81ab9f224df53b1a1b882 https://www.encodeproject.org/files/ENCFF002CRE/@@download/ENCFF002CRE.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF179ZJA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRE 195078 ENCODE Consortium 78d0c7f76bccc53849a7dac6442280b8 https://www.encodeproject.org/files/ENCFF179ZJA/@@download/ENCFF179ZJA.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF539UVI bam unfiltered alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WVQ, ENCFF643CGH 1181675486 ENCODE Processing Pipeline 05fae7275efcffb3edf19de5f5723bae https://www.encodeproject.org/files/ENCFF539UVI/@@download/ENCFF539UVI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471WJE bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WVQ, ENCFF643CGH 718258212 ENCODE Processing Pipeline 754b298daf2a1208255b1891e4f9d3fc https://www.encodeproject.org/files/ENCFF471WJE/@@download/ENCFF471WJE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259GVS bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WVR, ENCFF643CGH 1089041359 ENCODE Processing Pipeline 35a2ccf5115b69e9c2147d877df8591d https://www.encodeproject.org/files/ENCFF259GVS/@@download/ENCFF259GVS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF518KLK bam unfiltered alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WVR, ENCFF643CGH 1673393777 ENCODE Processing Pipeline 026c6730f7253de97e442acbf976924c https://www.encodeproject.org/files/ENCFF518KLK/@@download/ENCFF518KLK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039ZUT bam unfiltered alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WVQ, ENCFF807MUK 1176735824 ENCODE Processing Pipeline e5d0bb8f2ff179388f80f0bfd99031ac https://www.encodeproject.org/files/ENCFF039ZUT/@@download/ENCFF039ZUT.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF724ITL bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WVQ, ENCFF807MUK 718536511 ENCODE Processing Pipeline b463f8600bb9a70b0155f322a59b1fce https://www.encodeproject.org/files/ENCFF724ITL/@@download/ENCFF724ITL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF632DVE bam unfiltered alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WVR, ENCFF807MUK 1665961772 ENCODE Processing Pipeline da0ab2c2f931283f1bf4573cc83e6529 https://www.encodeproject.org/files/ENCFF632DVE/@@download/ENCFF632DVE.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF414KEO bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WVR, ENCFF807MUK 1089495466 ENCODE Processing Pipeline 61002477de2de21fcdb66f265e02530d https://www.encodeproject.org/files/ENCFF414KEO/@@download/ENCFF414KEO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF141HMY bigWig signal p-value ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF471WJE, ENCFF513EWK 611323667 ENCODE Processing Pipeline 8ec098ce8b835715f41253e19ce5282b https://www.encodeproject.org/files/ENCFF141HMY/@@download/ENCFF141HMY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF972ZIU bigWig signal p-value ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF259GVS, ENCFF513EWK 654093138 ENCODE Processing Pipeline 9afbc7b3d543166e10bf69c8fe9e7170 https://www.encodeproject.org/files/ENCFF972ZIU/@@download/ENCFF972ZIU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF330UHX bigWig signal p-value ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF259GVS, ENCFF471WJE, ENCFF513EWK 739920591 ENCODE Processing Pipeline b9b5d18c4451f25cd63943a828a853c8 https://www.encodeproject.org/files/ENCFF330UHX/@@download/ENCFF330UHX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF502KGA bigWig fold change over control ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF471WJE, ENCFF513EWK 410997595 ENCODE Processing Pipeline ebbddb72da868a9f105edff0e0c9d553 https://www.encodeproject.org/files/ENCFF502KGA/@@download/ENCFF502KGA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279KGJ bigWig fold change over control ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF259GVS, ENCFF513EWK 611582513 ENCODE Processing Pipeline 268c91ecf745916f7f94a1e0d15d785e https://www.encodeproject.org/files/ENCFF279KGJ/@@download/ENCFF279KGJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF131CHB bed narrowPeak conservative idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF222IZI, ENCFF375QIA, ENCFF394CLD, ENCFF419RSJ 29118 ENCODE Processing Pipeline 1431847e2da9f00ceb8e92a7712b8dcc https://www.encodeproject.org/files/ENCFF131CHB/@@download/ENCFF131CHB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF129USC bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375QIA 11012848 ENCODE Processing Pipeline 5b3ce38d763b25aa558db330424c6af8 https://www.encodeproject.org/files/ENCFF129USC/@@download/ENCFF129USC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF041UQU bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF222IZI 11354570 ENCODE Processing Pipeline 45e45f111be67bca10c85cd935a4f581 https://www.encodeproject.org/files/ENCFF041UQU/@@download/ENCFF041UQU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF613LKK bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF394CLD 11448966 ENCODE Processing Pipeline 9b68174a4ad76823326fbd2cd93e2558 https://www.encodeproject.org/files/ENCFF613LKK/@@download/ENCFF613LKK.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF222IZI bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF259GVS, ENCFF513EWK 5221160 ENCODE Processing Pipeline 354e998e43983689728ad480ac6e2077 https://www.encodeproject.org/files/ENCFF222IZI/@@download/ENCFF222IZI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF394CLD bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF259GVS, ENCFF471WJE, ENCFF513EWK 5727347 ENCODE Processing Pipeline b861cbb2a2eccb32aab48bd9e628a453 https://www.encodeproject.org/files/ENCFF394CLD/@@download/ENCFF394CLD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459SEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF062WBN 130379 ENCODE Processing Pipeline 52de2c51c090f1336a9b5c5496b4e360 https://www.encodeproject.org/files/ENCFF459SEB/@@download/ENCFF459SEB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375QIA bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF471WJE, ENCFF513EWK 4344280 ENCODE Processing Pipeline 5cfae68ce5e75fa381b17547e4519564 https://www.encodeproject.org/files/ENCFF375QIA/@@download/ENCFF375QIA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF062WBN bed narrowPeak optimal idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF222IZI, ENCFF375QIA, ENCFF394CLD, ENCFF419RSJ 43422 ENCODE Processing Pipeline 7417b8d5ef128ebb9612050dcda350e9 https://www.encodeproject.org/files/ENCFF062WBN/@@download/ENCFF062WBN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF027CMH bigWig fold change over control ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF259GVS, ENCFF471WJE, ENCFF513EWK 832819635 ENCODE Processing Pipeline 4e7b67e8e15f6a35851bd0a37c2e3770 https://www.encodeproject.org/files/ENCFF027CMH/@@download/ENCFF027CMH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF892QCI bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF131CHB 108552 ENCODE Processing Pipeline 0381a31c6f5ba74108d36713677af23c https://www.encodeproject.org/files/ENCFF892QCI/@@download/ENCFF892QCI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF868ELR bigWig fold change over control ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF724ITL 399977239 ENCODE Processing Pipeline 9f7515ebbab6592a9e285d1e8db4c6c2 https://www.encodeproject.org/files/ENCFF868ELR/@@download/ENCFF868ELR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF577WFW bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF414KEO, ENCFF599MVB, ENCFF724ITL 5732310 ENCODE Processing Pipeline 04d9ee3a00f74481b46f99b2c61ec1ef https://www.encodeproject.org/files/ENCFF577WFW/@@download/ENCFF577WFW.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF544RYC bigWig signal p-value ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF724ITL 540034696 ENCODE Processing Pipeline 9c87f6ffac5a93995b65c7ddd10ed5a4 https://www.encodeproject.org/files/ENCFF544RYC/@@download/ENCFF544RYC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF274AZI bigWig fold change over control ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF414KEO, ENCFF599MVB, ENCFF724ITL 836225785 ENCODE Processing Pipeline fca664e88eb734401992565f05f3b1bf https://www.encodeproject.org/files/ENCFF274AZI/@@download/ENCFF274AZI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF323MMZ bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF724ITL 4398850 ENCODE Processing Pipeline d9eb88f122cfd3a49fb2c63bc6e64e1c https://www.encodeproject.org/files/ENCFF323MMZ/@@download/ENCFF323MMZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF107RYF bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF414KEO, ENCFF599MVB 5226684 ENCODE Processing Pipeline 41ab63e5237d1da80bdb841fe9702e85 https://www.encodeproject.org/files/ENCFF107RYF/@@download/ENCFF107RYF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF606KGX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF673NFM 107967 ENCODE Processing Pipeline b15dacb3133ebcbc3743a16c5bf45fb9 https://www.encodeproject.org/files/ENCFF606KGX/@@download/ENCFF606KGX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF960LBM bigWig signal p-value ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF414KEO, ENCFF599MVB 550552212 ENCODE Processing Pipeline 6359ce8551343dd00939c4b4fcef59dd https://www.encodeproject.org/files/ENCFF960LBM/@@download/ENCFF960LBM.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF083MDX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF447QXT 128047 ENCODE Processing Pipeline 8743084e0d6ed3214264ff5ee4da8ebb https://www.encodeproject.org/files/ENCFF083MDX/@@download/ENCFF083MDX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF795VRK bigWig signal p-value ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF414KEO, ENCFF599MVB, ENCFF724ITL 740419885 ENCODE Processing Pipeline 5509c58a8385b58a79617d9dc1d48355 https://www.encodeproject.org/files/ENCFF795VRK/@@download/ENCFF795VRK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF684JXH bigWig fold change over control ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF414KEO, ENCFF599MVB 588966412 ENCODE Processing Pipeline d6a9d6e8c734bde28c3ee98a85481cc4 https://www.encodeproject.org/files/ENCFF684JXH/@@download/ENCFF684JXH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF083SYW bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF323MMZ 11046338 ENCODE Processing Pipeline 4f9218ad3f7ae263065990ad83c12046 https://www.encodeproject.org/files/ENCFF083SYW/@@download/ENCFF083SYW.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF600LJR bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107RYF 11353222 ENCODE Processing Pipeline 23b90fb890513ebc2264e3e968dc38e8 https://www.encodeproject.org/files/ENCFF600LJR/@@download/ENCFF600LJR.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF274WXJ bigBed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF577WFW 11445565 ENCODE Processing Pipeline f024fe7e4ead51a713081b692c0ec8c9 https://www.encodeproject.org/files/ENCFF274WXJ/@@download/ENCFF274WXJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF673NFM bed narrowPeak conservative idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF107RYF, ENCFF323MMZ, ENCFF577WFW 28912 ENCODE Processing Pipeline f114714ffda8e3c91b242721cf86f2d9 https://www.encodeproject.org/files/ENCFF673NFM/@@download/ENCFF673NFM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF447QXT bed narrowPeak optimal idr thresholded peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF107RYF, ENCFF323MMZ, ENCFF577WFW 42015 ENCODE Processing Pipeline 2c4ecf570a93875da4f921f636a2e02f https://www.encodeproject.org/files/ENCFF447QXT/@@download/ENCFF447QXT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF443EYQ bam unfiltered alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF060OGJ, ENCFF391PZV, ENCFF807MUK 7336900303 ENCODE Processing Pipeline 53f91ec835feeb7e481c5d39f1d9aa86 https://www.encodeproject.org/files/ENCFF443EYQ/@@download/ENCFF443EYQ.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF871NXR bam unfiltered alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF612DVW, ENCFF807MUK, ENCFF910KPS 3717412662 ENCODE Processing Pipeline 82c2701ff341c7f97e8c7e60aac99482 https://www.encodeproject.org/files/ENCFF871NXR/@@download/ENCFF871NXR.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF060OGJ fastq reads ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF391PZV 3497475777 Michael Snyder, Stanford 3146c59a4d349806636f6d9dbd24e893 SRA:SRR5111584 https://www.encodeproject.org/files/ENCFF060OGJ/@@download/ENCFF060OGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF391PZV fastq reads ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF060OGJ 3443904663 Michael Snyder, Stanford 67abfae30a100eaa1f36b2df64076c0f SRA:SRR5111584 https://www.encodeproject.org/files/ENCFF391PZV/@@download/ENCFF391PZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF910KPS fastq reads ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF612DVW 1673360585 Michael Snyder, Stanford 9e0442395ec277b4dd9e6a1af10b73ba SRA:SRR5111583 https://www.encodeproject.org/files/ENCFF910KPS/@@download/ENCFF910KPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF612DVW fastq reads ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF910KPS 1703507834 Michael Snyder, Stanford e5e98c7d402686d386d06f63d8887bc2 SRA:SRR5111583 https://www.encodeproject.org/files/ENCFF612DVW/@@download/ENCFF612DVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF465ENL bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF612DVW, ENCFF807MUK, ENCFF910KPS 3044517214 ENCODE Processing Pipeline 52ca06441c844be5f3d9832c2bd788c0 https://www.encodeproject.org/files/ENCFF465ENL/@@download/ENCFF465ENL.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF042HRP bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF060OGJ, ENCFF391PZV, ENCFF807MUK 6064401763 ENCODE Processing Pipeline 9403ffff238deb12aee5af704db9fcc8 https://www.encodeproject.org/files/ENCFF042HRP/@@download/ENCFF042HRP.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF130UJM bigWig signal p-value ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF042HRP, ENCFF581ZJL 1283753356 ENCODE Processing Pipeline b7d43d6c829c20626c241e056a0780b0 https://www.encodeproject.org/files/ENCFF130UJM/@@download/ENCFF130UJM.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF040ZZO bigWig signal p-value ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF465ENL 1016109033 ENCODE Processing Pipeline 995b1bff7953d77cb78d07c0f7c12e1e https://www.encodeproject.org/files/ENCFF040ZZO/@@download/ENCFF040ZZO.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF338EDO bigWig signal p-value ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF042HRP, ENCFF051LWI, ENCFF465ENL, ENCFF581ZJL 1796078395 ENCODE Processing Pipeline de02dbc8c001d4a8b1b169da476d4691 https://www.encodeproject.org/files/ENCFF338EDO/@@download/ENCFF338EDO.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF574QCU bigWig fold change over control ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF042HRP, ENCFF581ZJL 1540800076 ENCODE Processing Pipeline 7ab730a460653aebc8db45c567a1984b https://www.encodeproject.org/files/ENCFF574QCU/@@download/ENCFF574QCU.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF702LLJ bigWig fold change over control ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF465ENL 981980701 ENCODE Processing Pipeline 61af5d5f1464adb6118c3877dbdf2d0f https://www.encodeproject.org/files/ENCFF702LLJ/@@download/ENCFF702LLJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF332DMO bigWig fold change over control ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF042HRP, ENCFF051LWI, ENCFF465ENL, ENCFF581ZJL 2229710421 ENCODE Processing Pipeline 6a7c431869a2446a6ddc25d19741972f https://www.encodeproject.org/files/ENCFF332DMO/@@download/ENCFF332DMO.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF438RUW bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF042HRP, ENCFF581ZJL 7190369 ENCODE Processing Pipeline 29979f3a75ae2c25cf3e69c12045ab0c https://www.encodeproject.org/files/ENCFF438RUW/@@download/ENCFF438RUW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF601IZU bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF042HRP, ENCFF051LWI, ENCFF465ENL, ENCFF581ZJL 7275622 ENCODE Processing Pipeline b5cf75c692c3f8c8a6ecae96896aa146 https://www.encodeproject.org/files/ENCFF601IZU/@@download/ENCFF601IZU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF034WZF bigBed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF601IZU 12853251 ENCODE Processing Pipeline 13c22f1b3d0fbd9a87d5680f105d5c43 https://www.encodeproject.org/files/ENCFF034WZF/@@download/ENCFF034WZF.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF648JAT bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF465ENL 6825636 ENCODE Processing Pipeline 573107bfc0e8e29ef5b25a41ef1594c0 https://www.encodeproject.org/files/ENCFF648JAT/@@download/ENCFF648JAT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF842XCE bigBed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF648JAT 13121603 ENCODE Processing Pipeline dce94bc1ace2f4003ec433703cab0f45 https://www.encodeproject.org/files/ENCFF842XCE/@@download/ENCFF842XCE.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF333MZV bigBed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF438RUW 12976601 ENCODE Processing Pipeline 5dddc7e80f27f3444b5f41e6ae150e43 https://www.encodeproject.org/files/ENCFF333MZV/@@download/ENCFF333MZV.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF722EKW bam unfiltered alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF612DVW, ENCFF643CGH, ENCFF910KPS 3720026845 ENCODE Processing Pipeline 4d643560c9d73d7011ec3338ae583a8b https://www.encodeproject.org/files/ENCFF722EKW/@@download/ENCFF722EKW.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF940ZRQ bam unfiltered alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF060OGJ, ENCFF391PZV, ENCFF643CGH 7343967518 ENCODE Processing Pipeline 1ec8da0d50e26fbf34d544f217a12974 https://www.encodeproject.org/files/ENCFF940ZRQ/@@download/ENCFF940ZRQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF639CLN bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF612DVW, ENCFF643CGH, ENCFF910KPS 3045973174 ENCODE Processing Pipeline 04ed141468c9d3cf4a33149f401ec68c https://www.encodeproject.org/files/ENCFF639CLN/@@download/ENCFF639CLN.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF682OCC bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF060OGJ, ENCFF391PZV, ENCFF643CGH 6068733754 ENCODE Processing Pipeline 4e1aecd5e88a1af79218478329cceb37 https://www.encodeproject.org/files/ENCFF682OCC/@@download/ENCFF682OCC.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF657WIT bigWig signal p-value ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF682OCC, ENCFF910IKB 1289834504 ENCODE Processing Pipeline aa2f52a5c20f2807aab6eb7b0da58ccb https://www.encodeproject.org/files/ENCFF657WIT/@@download/ENCFF657WIT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF774XUB bigWig signal p-value ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF639CLN 1046476991 ENCODE Processing Pipeline 034ca6133ba9ed3b9facc8847179f91e https://www.encodeproject.org/files/ENCFF774XUB/@@download/ENCFF774XUB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF987YJV bigWig signal p-value ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF639CLN, ENCFF682OCC, ENCFF910IKB 1808253610 ENCODE Processing Pipeline 8ed6334f9813a8ca29e6988ff0adfe4c https://www.encodeproject.org/files/ENCFF987YJV/@@download/ENCFF987YJV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF881YVF bigWig fold change over control ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF682OCC, ENCFF910IKB 1542437913 ENCODE Processing Pipeline 9ba200c4d1cb693c24f909fa1a1e7db1 https://www.encodeproject.org/files/ENCFF881YVF/@@download/ENCFF881YVF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF309PZN bigWig fold change over control ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF639CLN 983930122 ENCODE Processing Pipeline 176d4154bf944622be3986930597a3b5 https://www.encodeproject.org/files/ENCFF309PZN/@@download/ENCFF309PZN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF406QJG bigWig fold change over control ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF639CLN, ENCFF682OCC, ENCFF910IKB 2210228359 ENCODE Processing Pipeline 68ac661eea141c2db48ad487f213b2f4 https://www.encodeproject.org/files/ENCFF406QJG/@@download/ENCFF406QJG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF949HEL bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF682OCC, ENCFF910IKB 7150016 ENCODE Processing Pipeline 41f6f260225cf2a2cb3f73d4e8965429 https://www.encodeproject.org/files/ENCFF949HEL/@@download/ENCFF949HEL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF991PXQ bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF639CLN 6726180 ENCODE Processing Pipeline 93f78692efaca8138b2e133a8c199266 https://www.encodeproject.org/files/ENCFF991PXQ/@@download/ENCFF991PXQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF318JNW bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF639CLN, ENCFF682OCC, ENCFF910IKB 7271574 ENCODE Processing Pipeline 11cffb5a9615064667a373e7bea3de88 https://www.encodeproject.org/files/ENCFF318JNW/@@download/ENCFF318JNW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF396JJK bigBed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF949HEL 12983443 ENCODE Processing Pipeline 67289bd26f44c65bfea547e60249743a https://www.encodeproject.org/files/ENCFF396JJK/@@download/ENCFF396JJK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF393HMQ bigBed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF991PXQ 13127316 ENCODE Processing Pipeline e7fa3afd5e1410583f7a8695aae15e75 https://www.encodeproject.org/files/ENCFF393HMQ/@@download/ENCFF393HMQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF549LDQ bigBed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF318JNW 12855767 ENCODE Processing Pipeline c9e71adf6d438a6a328eb93e122bcacb https://www.encodeproject.org/files/ENCFF549LDQ/@@download/ENCFF549LDQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF710ZFM bed narrowPeak conservative idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF318JNW, ENCFF419RSJ, ENCFF949HEL, ENCFF991PXQ 135199 ENCODE Processing Pipeline db2e5731edcb19bb8ed3dbabc8c35cba https://www.encodeproject.org/files/ENCFF710ZFM/@@download/ENCFF710ZFM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF499LTC bigBed narrowPeak conservative idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF710ZFM 352131 ENCODE Processing Pipeline fbfbd7d4866cd141b56cf3bf9985d7ad https://www.encodeproject.org/files/ENCFF499LTC/@@download/ENCFF499LTC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF163YZB bed narrowPeak optimal idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF318JNW, ENCFF419RSJ, ENCFF949HEL, ENCFF991PXQ 187646 ENCODE Processing Pipeline 7852cd66283e8e5a48b2b02aaece67e0 https://www.encodeproject.org/files/ENCFF163YZB/@@download/ENCFF163YZB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF169TUC bigBed narrowPeak optimal idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF163YZB 442409 ENCODE Processing Pipeline 69a0f01acba78d2f2313bc4aed1ed887 https://www.encodeproject.org/files/ENCFF169TUC/@@download/ENCFF169TUC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF945LXQ bed narrowPeak conservative idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF438RUW, ENCFF601IZU, ENCFF648JAT 107428 ENCODE Processing Pipeline 74dff9470dbcc23c534e9a72e1717c2c https://www.encodeproject.org/files/ENCFF945LXQ/@@download/ENCFF945LXQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF206GHG bigBed narrowPeak optimal idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF365NKO 316984 ENCODE Processing Pipeline 8cc00cf4053eb00c20a5775455113d33 https://www.encodeproject.org/files/ENCFF206GHG/@@download/ENCFF206GHG.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF937CUB bigBed narrowPeak conservative idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF945LXQ 257349 ENCODE Processing Pipeline 293c9e8dd76091be381854eb0d969be9 https://www.encodeproject.org/files/ENCFF937CUB/@@download/ENCFF937CUB.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF365NKO bed narrowPeak optimal idr thresholded peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF438RUW, ENCFF601IZU, ENCFF648JAT 150984 ENCODE Processing Pipeline 76edeea358cea581c91fbf496c434e0a https://www.encodeproject.org/files/ENCFF365NKO/@@download/ENCFF365NKO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF002EWA fastq reads ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 1 36 single-ended 832378842 Michael Snyder, Stanford 6d8cde59fb83064d8884d4d55bf68042 SRA:SRR6213503 https://www.encodeproject.org/files/ENCFF002EWA/@@download/ENCFF002EWA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF492DKQ/ released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF002EWI fastq reads ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 1 36 single-ended 957844325 Michael Snyder, Stanford 91f6efe3e009b0130a5aeeac46ab4b7e SRA:SRR6213502 https://www.encodeproject.org/files/ENCFF002EWI/@@download/ENCFF002EWI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF584LXI/ released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF280FDN bam unfiltered alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002EWA, ENCFF643CGH 1207030186 ENCODE Processing Pipeline cda1158d6ff7fd89c597c271d0b1a882 https://www.encodeproject.org/files/ENCFF280FDN/@@download/ENCFF280FDN.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF144SKI bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002EWI, ENCFF643CGH 744137203 ENCODE Processing Pipeline 94acc763b0b1c3f618bf0faa6e5eac22 https://www.encodeproject.org/files/ENCFF144SKI/@@download/ENCFF144SKI.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF015QPY bam unfiltered alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002EWI, ENCFF643CGH 1287107310 ENCODE Processing Pipeline a8ea2a62c300fa0b4ddb61bdfeb09b5a https://www.encodeproject.org/files/ENCFF015QPY/@@download/ENCFF015QPY.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF128DIV bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002EWA, ENCFF643CGH 831806643 ENCODE Processing Pipeline e029d9e7a18aa8f45bd43b17471e83f1 https://www.encodeproject.org/files/ENCFF128DIV/@@download/ENCFF128DIV.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF097IVC bam unfiltered alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002EWA, ENCFF807MUK 1200708254 ENCODE Processing Pipeline 9a53556cedc09bc2d5a590f7332663da https://www.encodeproject.org/files/ENCFF097IVC/@@download/ENCFF097IVC.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF402HQO bam unfiltered alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002EWI, ENCFF807MUK 1281389813 ENCODE Processing Pipeline dd6e00578ecbe91cbefbc11612e0ea0b https://www.encodeproject.org/files/ENCFF402HQO/@@download/ENCFF402HQO.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF228QGC bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002EWI, ENCFF807MUK 744572778 ENCODE Processing Pipeline 8ddd526120c0afcda9f8454430b71259 https://www.encodeproject.org/files/ENCFF228QGC/@@download/ENCFF228QGC.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF745VHU bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002EWA, ENCFF807MUK 832219385 ENCODE Processing Pipeline 4d630a3c3e5ca623c9639173857779b4 https://www.encodeproject.org/files/ENCFF745VHU/@@download/ENCFF745VHU.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF912XTL bigWig signal p-value ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF228QGC, ENCFF880YHS 531128527 ENCODE Processing Pipeline 169ac6eff77865da644e10d32d65e5ab https://www.encodeproject.org/files/ENCFF912XTL/@@download/ENCFF912XTL.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF207AHB bigWig fold change over control ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF228QGC, ENCFF485QJI, ENCFF745VHU, ENCFF880YHS 1022675443 ENCODE Processing Pipeline 810755c4ea442847a40f45f711b7b1cd https://www.encodeproject.org/files/ENCFF207AHB/@@download/ENCFF207AHB.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF882BWU bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF228QGC, ENCFF880YHS 4766514 ENCODE Processing Pipeline 9a3544f739c36347999043fb5562c30d https://www.encodeproject.org/files/ENCFF882BWU/@@download/ENCFF882BWU.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF776OEB bed narrowPeak conservative idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF343SNV, ENCFF362TZV, ENCFF882BWU 235877 ENCODE Processing Pipeline 67f49dbf9e12fe3c67bf26397ba75d9f https://www.encodeproject.org/files/ENCFF776OEB/@@download/ENCFF776OEB.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF759MVB bed narrowPeak optimal idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF343SNV, ENCFF362TZV, ENCFF882BWU 302978 ENCODE Processing Pipeline 5ef7807270fa0069761abc85d7009e7d https://www.encodeproject.org/files/ENCFF759MVB/@@download/ENCFF759MVB.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF842UWU bigBed narrowPeak optimal idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF225RGO 630201 ENCODE Processing Pipeline f03c4739aa62da44ac5b3679326efbd0 https://www.encodeproject.org/files/ENCFF842UWU/@@download/ENCFF842UWU.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched status, mismatched file status ENCFF155IKT bigWig signal p-value ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF228QGC, ENCFF485QJI, ENCFF745VHU, ENCFF880YHS 993512339 ENCODE Processing Pipeline 05bd0bcdf5b17b14a3d88a2720e27eec https://www.encodeproject.org/files/ENCFF155IKT/@@download/ENCFF155IKT.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF215ENN bigBed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF343SNV 11604257 ENCODE Processing Pipeline af1a2ffc81419c672621b577a3e2b993 https://www.encodeproject.org/files/ENCFF215ENN/@@download/ENCFF215ENN.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF791LJZ bigWig signal p-value ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF485QJI, ENCFF745VHU 574772433 ENCODE Processing Pipeline 927526718c3111229a6ca97c5461653e https://www.encodeproject.org/files/ENCFF791LJZ/@@download/ENCFF791LJZ.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF362TZV bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF485QJI, ENCFF745VHU 4711542 ENCODE Processing Pipeline f15dc4f03a6e6eeea01387cebb43de21 https://www.encodeproject.org/files/ENCFF362TZV/@@download/ENCFF362TZV.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF564DKO bigBed narrowPeak conservative idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF671UGE 419634 ENCODE Processing Pipeline 780360feee3e6c543493647f55bb9e2a https://www.encodeproject.org/files/ENCFF564DKO/@@download/ENCFF564DKO.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched status, mismatched file status ENCFF753KJA bigWig fold change over control ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF485QJI, ENCFF745VHU 492806489 ENCODE Processing Pipeline 31e52dff0565320a2d53dc45a3a07619 https://www.encodeproject.org/files/ENCFF753KJA/@@download/ENCFF753KJA.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF998FEZ bigWig fold change over control ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF228QGC, ENCFF880YHS 405646665 ENCODE Processing Pipeline c922b9e42f3ebe9f3fe8dffa1a98c14f https://www.encodeproject.org/files/ENCFF998FEZ/@@download/ENCFF998FEZ.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF343SNV bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF228QGC, ENCFF485QJI, ENCFF745VHU, ENCFF880YHS 5929726 ENCODE Processing Pipeline 518051536d16d48a2860df97a61e7f9c https://www.encodeproject.org/files/ENCFF343SNV/@@download/ENCFF343SNV.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF044GSH bigBed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF882BWU 11132290 ENCODE Processing Pipeline 6c91ff64b0ab9724e7fb62b783269f42 https://www.encodeproject.org/files/ENCFF044GSH/@@download/ENCFF044GSH.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF364QXW bigBed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF362TZV 11187667 ENCODE Processing Pipeline 202c8a2c512134e28835ef8c8e43ca60 https://www.encodeproject.org/files/ENCFF364QXW/@@download/ENCFF364QXW.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF931KVR bigWig signal p-value ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF144SKI, ENCFF195PNZ 520210461 ENCODE Processing Pipeline d78edc5c194927cd9483bc71b52b9efa https://www.encodeproject.org/files/ENCFF931KVR/@@download/ENCFF931KVR.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF850OLE bigWig signal p-value ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF128DIV, ENCFF928IDQ 571359070 ENCODE Processing Pipeline 5bc10b9f604060e1e234fc5be0adda73 https://www.encodeproject.org/files/ENCFF850OLE/@@download/ENCFF850OLE.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF324NFP bigWig signal p-value ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF128DIV, ENCFF144SKI, ENCFF195PNZ, ENCFF928IDQ 1093121802 ENCODE Processing Pipeline c329a5bfe4bb2dc71025bc6bcd909bab https://www.encodeproject.org/files/ENCFF324NFP/@@download/ENCFF324NFP.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF483UFK bigWig fold change over control ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF144SKI, ENCFF195PNZ 406248326 ENCODE Processing Pipeline 2dd64e8e58277353343a9e1844f1654e https://www.encodeproject.org/files/ENCFF483UFK/@@download/ENCFF483UFK.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF295DVX bigWig fold change over control ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF128DIV, ENCFF144SKI, ENCFF195PNZ, ENCFF928IDQ 996566807 ENCODE Processing Pipeline c392472ae63ac5dc2e5ca1d5d0945c93 https://www.encodeproject.org/files/ENCFF295DVX/@@download/ENCFF295DVX.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF344ZFQ bigWig fold change over control ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF128DIV, ENCFF928IDQ 495236650 ENCODE Processing Pipeline 148c962c2a40a886fbf825e897596ed5 https://www.encodeproject.org/files/ENCFF344ZFQ/@@download/ENCFF344ZFQ.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF238BQE bigBed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF865HWY 11638148 ENCODE Processing Pipeline 2d5dc3bf56666f6276085a6bf1e8129f https://www.encodeproject.org/files/ENCFF238BQE/@@download/ENCFF238BQE.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF865HWY bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF128DIV, ENCFF144SKI, ENCFF195PNZ, ENCFF928IDQ 5780521 ENCODE Processing Pipeline b4d71a1d6a559ae6852e615a074a97f8 https://www.encodeproject.org/files/ENCFF865HWY/@@download/ENCFF865HWY.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF127OMS bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF144SKI, ENCFF195PNZ 4708087 ENCODE Processing Pipeline 5a4fe4555f03afdc0c83f44f2037002d https://www.encodeproject.org/files/ENCFF127OMS/@@download/ENCFF127OMS.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF212RZM bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF128DIV, ENCFF928IDQ 4580529 ENCODE Processing Pipeline b1dd0ca7021065d5f7ca59264263e413 https://www.encodeproject.org/files/ENCFF212RZM/@@download/ENCFF212RZM.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF184FAB bigBed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF212RZM 11044362 ENCODE Processing Pipeline b4afd575dd77884c8a441cd5118904b6 https://www.encodeproject.org/files/ENCFF184FAB/@@download/ENCFF184FAB.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF141DPU bigBed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF127OMS 11099665 ENCODE Processing Pipeline ee383718ab97a24a675278cf794ee14b https://www.encodeproject.org/files/ENCFF141DPU/@@download/ENCFF141DPU.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF938BOJ bed narrowPeak optimal idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF127OMS, ENCFF212RZM, ENCFF419RSJ, ENCFF865HWY 312353 ENCODE Processing Pipeline e46bed9d8d90b944d6c99d2a22b9df2b https://www.encodeproject.org/files/ENCFF938BOJ/@@download/ENCFF938BOJ.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF211QZX bigBed narrowPeak conservative idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF346KJG 430371 ENCODE Processing Pipeline 7ca8657cf847c416b11586da62db6f8c https://www.encodeproject.org/files/ENCFF211QZX/@@download/ENCFF211QZX.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF346KJG bed narrowPeak conservative idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF127OMS, ENCFF212RZM, ENCFF419RSJ, ENCFF865HWY 241588 ENCODE Processing Pipeline ab745a4216192be56201cda97aab05eb https://www.encodeproject.org/files/ENCFF346KJG/@@download/ENCFF346KJG.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF801JRP bigBed narrowPeak optimal idr thresholded peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF938BOJ 648788 ENCODE Processing Pipeline 19ede47aa00a526446b71d790bbe42ee https://www.encodeproject.org/files/ENCFF801JRP/@@download/ENCFF801JRP.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF923WIN fastq reads ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF518DXW 1475380361 Michael Snyder, Stanford 009f99c4c38b2b10a6ac1b0bcd7b8644 SRA:SRR5112032 https://www.encodeproject.org/files/ENCFF923WIN/@@download/ENCFF923WIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF909GZY fastq reads ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF728GHG 1497733725 Michael Snyder, Stanford 5cf7b3db11199f4bb0c315e5e0488b82 SRA:SRR5112033 https://www.encodeproject.org/files/ENCFF909GZY/@@download/ENCFF909GZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF518DXW fastq reads ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF923WIN 1492314413 Michael Snyder, Stanford bb90bc95cd6e218a7bd9d9956fb97c68 SRA:SRR5112032 https://www.encodeproject.org/files/ENCFF518DXW/@@download/ENCFF518DXW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF728GHG fastq reads ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF909GZY 1506373926 Michael Snyder, Stanford 42f480cb9dcd8f24c75254faa8526542 SRA:SRR5112033 https://www.encodeproject.org/files/ENCFF728GHG/@@download/ENCFF728GHG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF648WTO bam unfiltered alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF728GHG, ENCFF807MUK, ENCFF909GZY 3390040661 ENCODE Processing Pipeline c9ba71fe071d1831cfc69bb5730c37aa https://www.encodeproject.org/files/ENCFF648WTO/@@download/ENCFF648WTO.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF231FNG bam unfiltered alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF518DXW, ENCFF807MUK, ENCFF923WIN 3324201486 ENCODE Processing Pipeline 0d1b1394e0dae9d222c70cc1f26f83b4 https://www.encodeproject.org/files/ENCFF231FNG/@@download/ENCFF231FNG.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF349HGP bam unfiltered alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF728GHG, ENCFF909GZY 3393534950 ENCODE Processing Pipeline ff6af865c23ac6b9ba94b153e60232fd https://www.encodeproject.org/files/ENCFF349HGP/@@download/ENCFF349HGP.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF242BNA bam unfiltered alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF518DXW, ENCFF643CGH, ENCFF923WIN 3326321686 ENCODE Processing Pipeline 887826e6f7097c5fd9037d1352a44058 https://www.encodeproject.org/files/ENCFF242BNA/@@download/ENCFF242BNA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF027SPN bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF518DXW, ENCFF807MUK, ENCFF923WIN 2689616992 ENCODE Processing Pipeline 4afbd0cf9e8fdbd58a0419e129fd9aaf https://www.encodeproject.org/files/ENCFF027SPN/@@download/ENCFF027SPN.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF092BEM bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF728GHG, ENCFF807MUK, ENCFF909GZY 2826289500 ENCODE Processing Pipeline 311b3b75341083c234967bd0b8d8f2a3 https://www.encodeproject.org/files/ENCFF092BEM/@@download/ENCFF092BEM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF526BRU bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF518DXW, ENCFF643CGH, ENCFF923WIN 2691266524 ENCODE Processing Pipeline f67fb2afed31ddae48aeff9185caa437 https://www.encodeproject.org/files/ENCFF526BRU/@@download/ENCFF526BRU.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF574UFQ bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF728GHG, ENCFF909GZY 2828137760 ENCODE Processing Pipeline ee83ec9ac50e927ca28a0d7d0a80ba2d https://www.encodeproject.org/files/ENCFF574UFQ/@@download/ENCFF574UFQ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF424RTI bigWig signal p-value ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF027SPN 1201243193 ENCODE Processing Pipeline 54d811c29e00ffafac3e307245b49d6f https://www.encodeproject.org/files/ENCFF424RTI/@@download/ENCFF424RTI.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF248WRZ bigWig signal p-value ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF092BEM 1217651446 ENCODE Processing Pipeline 13e86d34ad261247452d096b5499ee84 https://www.encodeproject.org/files/ENCFF248WRZ/@@download/ENCFF248WRZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF290YEB bigWig signal p-value ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF027SPN, ENCFF092BEM 1391810909 ENCODE Processing Pipeline 9607d77cf47446bc5e0a2c8236f9c0c8 https://www.encodeproject.org/files/ENCFF290YEB/@@download/ENCFF290YEB.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF056ALV bigWig fold change over control ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF027SPN 1080131499 ENCODE Processing Pipeline 5e79e7c90f3673cc038762212cf8698e https://www.encodeproject.org/files/ENCFF056ALV/@@download/ENCFF056ALV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF599GIF bigWig fold change over control ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF092BEM 1115082236 ENCODE Processing Pipeline 1a711659620de97831e2f4334a47a938 https://www.encodeproject.org/files/ENCFF599GIF/@@download/ENCFF599GIF.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF717BLW bigWig fold change over control ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF027SPN, ENCFF092BEM 1628049871 ENCODE Processing Pipeline dbaef78ce6035e043660217b4b1909f3 https://www.encodeproject.org/files/ENCFF717BLW/@@download/ENCFF717BLW.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF774LOS bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF027SPN, ENCFF092BEM 6657489 ENCODE Processing Pipeline d6ac0b08184aec3f1cffb2a058733e36 https://www.encodeproject.org/files/ENCFF774LOS/@@download/ENCFF774LOS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF568MUB bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF027SPN 5827897 ENCODE Processing Pipeline 65bacefa9942b93b50dd572719af0a62 https://www.encodeproject.org/files/ENCFF568MUB/@@download/ENCFF568MUB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF669JCO bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF092BEM 5957933 ENCODE Processing Pipeline 6979f0fe47f8c659a777cb9e8707345e https://www.encodeproject.org/files/ENCFF669JCO/@@download/ENCFF669JCO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF186WZU bigBed narrowPeak conservative idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF576GZP 234786 ENCODE Processing Pipeline 7724c56e73bca258d5a641d42d9cfa84 https://www.encodeproject.org/files/ENCFF186WZU/@@download/ENCFF186WZU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF079TBW bigBed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF568MUB 11405710 ENCODE Processing Pipeline 128b0dda3911346b21982ab015270044 https://www.encodeproject.org/files/ENCFF079TBW/@@download/ENCFF079TBW.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF216TTM bigBed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF669JCO 11347605 ENCODE Processing Pipeline 88f01367b265ac4db39199523bf32a79 https://www.encodeproject.org/files/ENCFF216TTM/@@download/ENCFF216TTM.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF186FHQ bigBed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF774LOS 11293024 ENCODE Processing Pipeline da81d3e2b99611329b02ea491be5b802 https://www.encodeproject.org/files/ENCFF186FHQ/@@download/ENCFF186FHQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF576GZP bed narrowPeak conservative idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF568MUB, ENCFF669JCO, ENCFF774LOS 99732 ENCODE Processing Pipeline 634c8a1c4866f858a10169f3cb700d0d https://www.encodeproject.org/files/ENCFF576GZP/@@download/ENCFF576GZP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF231YQK bed narrowPeak optimal idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF568MUB, ENCFF669JCO, ENCFF774LOS 108058 ENCODE Processing Pipeline afea713b3d25a677c0b3879421aeb5cd https://www.encodeproject.org/files/ENCFF231YQK/@@download/ENCFF231YQK.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF321CGH bigBed narrowPeak optimal idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF231YQK 245768 ENCODE Processing Pipeline bce704e4cbf8ebd85d03ab16fc7e2c8a https://www.encodeproject.org/files/ENCFF321CGH/@@download/ENCFF321CGH.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF696ZWE bigWig signal p-value ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF574UFQ 1205486961 ENCODE Processing Pipeline 374dd3cd74937ba5d677c84cb2b05006 https://www.encodeproject.org/files/ENCFF696ZWE/@@download/ENCFF696ZWE.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF989DXN bigWig signal p-value ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF526BRU 1175175792 ENCODE Processing Pipeline 2c8bf9e8d060868816a27eefe3f6b94a https://www.encodeproject.org/files/ENCFF989DXN/@@download/ENCFF989DXN.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF853GWG bigWig signal p-value ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF526BRU, ENCFF574UFQ 1349982062 ENCODE Processing Pipeline d80f413946f9859044a5d12463777824 https://www.encodeproject.org/files/ENCFF853GWG/@@download/ENCFF853GWG.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF037KKD bigWig fold change over control ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF526BRU 1090652040 ENCODE Processing Pipeline 9c8b4eca66ccc24f74fe4adddf3ff76c https://www.encodeproject.org/files/ENCFF037KKD/@@download/ENCFF037KKD.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF402BDK bigWig fold change over control ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF574UFQ 1133271702 ENCODE Processing Pipeline 26d1ec3ee83f2e171e1e4cb1557ca591 https://www.encodeproject.org/files/ENCFF402BDK/@@download/ENCFF402BDK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF103YFF bigWig fold change over control ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF526BRU, ENCFF574UFQ 1637694194 ENCODE Processing Pipeline 1025ceb111d8d0466319f1346cdfd591 https://www.encodeproject.org/files/ENCFF103YFF/@@download/ENCFF103YFF.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF099UVV bed narrowPeak conservative idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF141EFM, ENCFF241ZGU, ENCFF419RSJ, ENCFF538KYH 99703 ENCODE Processing Pipeline d9a47464a1a3ff9f4cb8db38bfaef386 https://www.encodeproject.org/files/ENCFF099UVV/@@download/ENCFF099UVV.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF141EFM bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF526BRU 5635167 ENCODE Processing Pipeline c3c9c0dd0e6c2005ede17eabd3663635 https://www.encodeproject.org/files/ENCFF141EFM/@@download/ENCFF141EFM.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF538KYH bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF526BRU, ENCFF574UFQ 6505766 ENCODE Processing Pipeline 545c5cd06133d0dd6264a3460a51aeff https://www.encodeproject.org/files/ENCFF538KYH/@@download/ENCFF538KYH.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF241ZGU bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF574UFQ 5759958 ENCODE Processing Pipeline d6dccb0746009bf6279698bbaf15d679 https://www.encodeproject.org/files/ENCFF241ZGU/@@download/ENCFF241ZGU.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF055VQH bigBed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF141EFM 11385687 ENCODE Processing Pipeline 9bed3f05d826192a18c7371d28ffa3e6 https://www.encodeproject.org/files/ENCFF055VQH/@@download/ENCFF055VQH.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF638FNX bigBed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF538KYH 11306253 ENCODE Processing Pipeline 70682d2a2bb99fedf4e01bdfcbadc9e4 https://www.encodeproject.org/files/ENCFF638FNX/@@download/ENCFF638FNX.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF435URH bigBed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF241ZGU 11339460 ENCODE Processing Pipeline a2529bf6db232fb4d4a60a6fc74844c0 https://www.encodeproject.org/files/ENCFF435URH/@@download/ENCFF435URH.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF751OOI bigBed narrowPeak conservative idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF099UVV 235645 ENCODE Processing Pipeline 2977b0dbb15df183f3b54494f7d51f87 https://www.encodeproject.org/files/ENCFF751OOI/@@download/ENCFF751OOI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF984BCF bed narrowPeak optimal idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF141EFM, ENCFF241ZGU, ENCFF419RSJ, ENCFF538KYH 108444 ENCODE Processing Pipeline 551423207f6b50ed67c02c271a5c18be https://www.encodeproject.org/files/ENCFF984BCF/@@download/ENCFF984BCF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF924ICT bigBed narrowPeak optimal idr thresholded peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF984BCF 247671 ENCODE Processing Pipeline b9e66e8d442e94842e85e6017f40ac8e https://www.encodeproject.org/files/ENCFF924ICT/@@download/ENCFF924ICT.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF000PBB bigBed broadPeak peaks ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEG 769389 Richard Myers, HAIB b58ffc48d5fe3c1214a1a5ee1252a309 https://www.encodeproject.org/files/ENCFF000PBB/@@download/ENCFF000PBB.bigBed hg19 released biological replicates with identical biosample ENCFF000PBC bam alignments ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PBK 1239952685 Richard Myers, HAIB 37b050486b92b34b920b47b023155269 https://www.encodeproject.org/files/ENCFF000PBC/@@download/ENCFF000PBC.bam hg19 released biological replicates with identical biosample ENCFF000PBD bigBed broadPeak peaks ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UEH 902765 Richard Myers, HAIB 8ad5f1031f4552781a8c13ae67aab1e4 https://www.encodeproject.org/files/ENCFF000PBD/@@download/ENCFF000PBD.bigBed hg19 released biological replicates with identical biosample ENCFF000PBE bam alignments ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PBP 1611001083 Richard Myers, HAIB 1a34e6b99dffc25e91fa0ad6500c07cd https://www.encodeproject.org/files/ENCFF000PBE/@@download/ENCFF000PBE.bam hg19 released biological replicates with identical biosample ENCFF000PBF bigWig raw signal ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 137044857 Richard Myers, HAIB ffc26ce5ae6aaf086ceb33062ed82bd2 https://www.encodeproject.org/files/ENCFF000PBF/@@download/ENCFF000PBF.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PBH bigWig raw signal ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 235985444 Richard Myers, HAIB ab8d76384777d9df03f466ca36432e87 https://www.encodeproject.org/files/ENCFF000PBH/@@download/ENCFF000PBH.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PBK fastq reads ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1336111600 Richard Myers, HAIB 24a8ded11af8859dc79c40854ed1077f https://www.encodeproject.org/files/ENCFF000PBK/@@download/ENCFF000PBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PBP fastq reads ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1729453656 Richard Myers, HAIB a6253f847d48d242c7c57272158b9a3f https://www.encodeproject.org/files/ENCFF000PBP/@@download/ENCFF000PBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEG bed broadPeak peaks ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 483074 Richard Myers, HAIB 97e05f4cf725c1b5ee1c6a0b13ef18aa https://www.encodeproject.org/files/ENCFF001UEG/@@download/ENCFF001UEG.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UEH bed broadPeak peaks ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 610639 Richard Myers, HAIB 24bf65a941f10b2c3c9fb25608be98ce https://www.encodeproject.org/files/ENCFF001UEH/@@download/ENCFF001UEH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000VXJ bigBed narrowPeak peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEM 119593 Sherman Weissman, Yale 1e56b9104a633ba5c817b6161ba36dea https://www.encodeproject.org/files/ENCFF000VXJ/@@download/ENCFF000VXJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VXK bigWig signal ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 264476048 Sherman Weissman, Yale deed005ead52aa1fccb8b36372e97f22 https://www.encodeproject.org/files/ENCFF000VXK/@@download/ENCFF000VXK.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000VXL bam alignments ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VYD 182771510 Sherman Weissman, Yale 561ae5ec116854778eeec37a5f868f8e https://www.encodeproject.org/files/ENCFF000VXL/@@download/ENCFF000VXL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VXM bam alignments ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VYE 215980387 Sherman Weissman, Yale 8712f61f06f2f8e0bf618edd5edd36b0 https://www.encodeproject.org/files/ENCFF000VXM/@@download/ENCFF000VXM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VYD fastq reads ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 141518360 Sherman Weissman, Yale 9c16ef87580d58b87d991ab7f5c46d4d https://www.encodeproject.org/files/ENCFF000VYD/@@download/ENCFF000VYD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF000VYE fastq reads ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 168711450 Sherman Weissman, Yale 5ed626f35f46828d860d42a8f1a83c6f https://www.encodeproject.org/files/ENCFF000VYE/@@download/ENCFF000VYE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF001VEM bed narrowPeak peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 24502 Sherman Weissman, Yale fcccd0ed536c0c17929a02785f58bb49 https://www.encodeproject.org/files/ENCFF001VEM/@@download/ENCFF001VEM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002COV bed narrowPeak optimal idr thresholded peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 54938 ENCODE Consortium Analysis Working Group 1624be090891349e91ac01a901993f79 https://www.encodeproject.org/files/ENCFF002COV/@@download/ENCFF002COV.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF859INR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COV 142879 ENCODE Consortium fd85359b2636095b376fa6eda7bce351 https://www.encodeproject.org/files/ENCFF859INR/@@download/ENCFF859INR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF058HDH fastq reads ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 1 36 paired-ended 1 ENCFF008JGE 642003040 Bradley Bernstein, Broad ad8f6b1966daf9aae593c8808d1fe2df https://www.encodeproject.org/files/ENCFF058HDH/@@download/ENCFF058HDH.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length mismatched status, experiment not submitted to GEO ENCFF813ETK fastq reads ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 1 25 paired-ended 2 ENCFF547JWR 617553869 Bradley Bernstein, Broad bae12d11a774b6b1c0ecc379e938eafa https://www.encodeproject.org/files/ENCFF813ETK/@@download/ENCFF813ETK.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO missing controlled_by ENCFF008JGE fastq reads ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 1 25 paired-ended 2 ENCFF058HDH 512413391 Bradley Bernstein, Broad bb538eaf342b57c0cf101d48ada382ee https://www.encodeproject.org/files/ENCFF008JGE/@@download/ENCFF008JGE.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO missing controlled_by ENCFF547JWR fastq reads ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 1 36 paired-ended 1 ENCFF813ETK 780617820 Bradley Bernstein, Broad 5349f02209afeff504ee103fd028cd65 https://www.encodeproject.org/files/ENCFF547JWR/@@download/ENCFF547JWR.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF113NSD bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 36 ENCFF058HDH, ENCFF807MUK 625941748 ENCODE Processing Pipeline 2e74f006c872f627137234b100e96b27 https://www.encodeproject.org/files/ENCFF113NSD/@@download/ENCFF113NSD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF596DGY bam unfiltered alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 36 ENCFF547JWR, ENCFF807MUK 1132911301 ENCODE Processing Pipeline 50f485ef2e8f863802cdc6ab8e24aca2 https://www.encodeproject.org/files/ENCFF596DGY/@@download/ENCFF596DGY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF832UVN bam unfiltered alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 36 ENCFF547JWR, ENCFF643CGH 1140599812 ENCODE Processing Pipeline c9fba5d4c72a96ebab3555e210cb4a5c https://www.encodeproject.org/files/ENCFF832UVN/@@download/ENCFF832UVN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF029WHD bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 36 ENCFF547JWR, ENCFF807MUK 750515659 ENCODE Processing Pipeline 28fed679ec4ce48fc3bd7b24f353b787 https://www.encodeproject.org/files/ENCFF029WHD/@@download/ENCFF029WHD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF835LRT bam unfiltered alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 36 ENCFF058HDH, ENCFF643CGH 945964723 ENCODE Processing Pipeline 36679a55f375ba19a51b9b43531f2b76 https://www.encodeproject.org/files/ENCFF835LRT/@@download/ENCFF835LRT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF937SGT bam unfiltered alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 36 ENCFF058HDH, ENCFF807MUK 940139369 ENCODE Processing Pipeline e20619cea6c5e3d03fcf8f9416e7cfd7 https://www.encodeproject.org/files/ENCFF937SGT/@@download/ENCFF937SGT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF530BMT bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 36 ENCFF058HDH, ENCFF643CGH 625614143 ENCODE Processing Pipeline b3fd1b19d2d5259567d142f2069258ae https://www.encodeproject.org/files/ENCFF530BMT/@@download/ENCFF530BMT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF717JQH bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 36 ENCFF547JWR, ENCFF643CGH 750172564 ENCODE Processing Pipeline dda92803c972aa54e5bccb5b56a6d3a7 https://www.encodeproject.org/files/ENCFF717JQH/@@download/ENCFF717JQH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF441EZG bigWig signal p-value ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF029WHD, ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 1214561957 ENCODE Processing Pipeline 055827f42df22ab74afc53989b07006f https://www.encodeproject.org/files/ENCFF441EZG/@@download/ENCFF441EZG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF768XZW bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF029WHD, ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 7260673 ENCODE Processing Pipeline 99c66434eb4ffd20b6b1c388eba9fa0d https://www.encodeproject.org/files/ENCFF768XZW/@@download/ENCFF768XZW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF468LVX bigWig signal p-value ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 1057446661 ENCODE Processing Pipeline 985bab9db9890a19f55ff1395afa8ca5 https://www.encodeproject.org/files/ENCFF468LVX/@@download/ENCFF468LVX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF352THZ bigWig fold change over control ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF029WHD, ENCFF165PBN, ENCFF705NOL 1080271134 ENCODE Processing Pipeline 2d6f1866e139b0625dbdc0485d2fa26d https://www.encodeproject.org/files/ENCFF352THZ/@@download/ENCFF352THZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF143UBP bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF029WHD, ENCFF165PBN, ENCFF705NOL 6711942 ENCODE Processing Pipeline 58b8e00b67c0f78cfabe5ece85c81983 https://www.encodeproject.org/files/ENCFF143UBP/@@download/ENCFF143UBP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF300CTV bigWig fold change over control ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 869091032 ENCODE Processing Pipeline 930e9854f92748402fa3962959ef9eb3 https://www.encodeproject.org/files/ENCFF300CTV/@@download/ENCFF300CTV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF431DGH bigWig signal p-value ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF029WHD, ENCFF165PBN, ENCFF705NOL 1071164629 ENCODE Processing Pipeline c64df429403e9dac7f287ff7f52e1443 https://www.encodeproject.org/files/ENCFF431DGH/@@download/ENCFF431DGH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF073EJQ bigWig fold change over control ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF029WHD, ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 1339068441 ENCODE Processing Pipeline fc9a7f6a081ccc028bc9d742cf19f932 https://www.encodeproject.org/files/ENCFF073EJQ/@@download/ENCFF073EJQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF885ZDD bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 6736392 ENCODE Processing Pipeline 0a1d4c05594af25cdd51df5672a46cce https://www.encodeproject.org/files/ENCFF885ZDD/@@download/ENCFF885ZDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF680ITB bigBed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF885ZDD 12980619 ENCODE Processing Pipeline 505c4d27a59e679d6f92b410d7b77938 https://www.encodeproject.org/files/ENCFF680ITB/@@download/ENCFF680ITB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF478HOI bigBed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF143UBP 13261702 ENCODE Processing Pipeline ec3a896e4e7b539a1e79843b9edc2f9c https://www.encodeproject.org/files/ENCFF478HOI/@@download/ENCFF478HOI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF824PRA bigBed narrowPeak conservative idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF743SDK 633806 ENCODE Processing Pipeline a0afb760851b54ec5503e8108eb318e8 https://www.encodeproject.org/files/ENCFF824PRA/@@download/ENCFF824PRA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF148WNU bigBed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF768XZW 12893647 ENCODE Processing Pipeline f9fc0a088850a3ca4df2517c19767754 https://www.encodeproject.org/files/ENCFF148WNU/@@download/ENCFF148WNU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF743SDK bed narrowPeak conservative idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF001TDO, ENCFF143UBP, ENCFF768XZW, ENCFF885ZDD 224347 ENCODE Processing Pipeline 3fdc5f492110939fa97bbb25a221319f https://www.encodeproject.org/files/ENCFF743SDK/@@download/ENCFF743SDK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF897TQL bigBed narrowPeak optimal idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF384XDG 991591 ENCODE Processing Pipeline 63f21ac5c368612fcdd56479f6b09b7a https://www.encodeproject.org/files/ENCFF897TQL/@@download/ENCFF897TQL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF384XDG bed narrowPeak optimal idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF001TDO, ENCFF143UBP, ENCFF768XZW, ENCFF885ZDD 392563 ENCODE Processing Pipeline 8f5eb0c069de07fba74999ecefd5725f https://www.encodeproject.org/files/ENCFF384XDG/@@download/ENCFF384XDG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF322PIW bigWig signal p-value ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF645CCA, ENCFF717JQH, ENCFF943MYJ 1102324842 ENCODE Processing Pipeline ca89276f3df098663c529e937aba9d3e https://www.encodeproject.org/files/ENCFF322PIW/@@download/ENCFF322PIW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF069KPS bed narrowPeak optimal idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF417QJN, ENCFF419RSJ, ENCFF860BMK, ENCFF871HBZ 363488 ENCODE Processing Pipeline 47031583274c418b7ab412548ed59536 https://www.encodeproject.org/files/ENCFF069KPS/@@download/ENCFF069KPS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF154EEF bigWig fold change over control ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF645CCA, ENCFF717JQH, ENCFF943MYJ 1072632045 ENCODE Processing Pipeline adbb6872a65ab4862152e5984c1e4558 https://www.encodeproject.org/files/ENCFF154EEF/@@download/ENCFF154EEF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF871HBZ bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF530BMT, ENCFF645CCA, ENCFF943MYJ 6728768 ENCODE Processing Pipeline a527ab6a08d9ab1ec75f033cbc288f25 https://www.encodeproject.org/files/ENCFF871HBZ/@@download/ENCFF871HBZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF049QNE bigBed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF860BMK 12873500 ENCODE Processing Pipeline 41ed9dc207e3ea9a8e3954ad2649a24a https://www.encodeproject.org/files/ENCFF049QNE/@@download/ENCFF049QNE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF701NNS bigWig fold change over control ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF530BMT, ENCFF645CCA, ENCFF717JQH, ENCFF943MYJ 1356585765 ENCODE Processing Pipeline f38c59f9e24c3a7a1ecf8f2f7e980ecc https://www.encodeproject.org/files/ENCFF701NNS/@@download/ENCFF701NNS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF417QJN bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF645CCA, ENCFF717JQH, ENCFF943MYJ 6723434 ENCODE Processing Pipeline 69bb56a27c0da17f93c5795319a64b27 https://www.encodeproject.org/files/ENCFF417QJN/@@download/ENCFF417QJN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF080DDQ bigBed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF871HBZ 12976306 ENCODE Processing Pipeline 44480bb0c2bcd4877093c62541602c84 https://www.encodeproject.org/files/ENCFF080DDQ/@@download/ENCFF080DDQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF527MOR bed narrowPeak conservative idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF417QJN, ENCFF419RSJ, ENCFF860BMK, ENCFF871HBZ 218233 ENCODE Processing Pipeline cb3fe1a408c87b21d1642664d55eefb4 https://www.encodeproject.org/files/ENCFF527MOR/@@download/ENCFF527MOR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF931LYW bigBed narrowPeak optimal idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF069KPS 941285 ENCODE Processing Pipeline a6aa770f9c7f2798ed0e63b29e605349 https://www.encodeproject.org/files/ENCFF931LYW/@@download/ENCFF931LYW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF681OSX bigWig signal p-value ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF530BMT, ENCFF645CCA, ENCFF943MYJ 1140639063 ENCODE Processing Pipeline 9bec570e7699482d665faf1338816a6e https://www.encodeproject.org/files/ENCFF681OSX/@@download/ENCFF681OSX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF635BFE bigWig fold change over control ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF530BMT, ENCFF645CCA, ENCFF943MYJ 847751915 ENCODE Processing Pipeline 51590c7e2f344db60b83b6e003b78dbd https://www.encodeproject.org/files/ENCFF635BFE/@@download/ENCFF635BFE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF830CJM bigBed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF417QJN 13250478 ENCODE Processing Pipeline c76f87cb89411fdf4226629ba9410cf5 https://www.encodeproject.org/files/ENCFF830CJM/@@download/ENCFF830CJM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF860BMK bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF530BMT, ENCFF645CCA, ENCFF717JQH, ENCFF943MYJ 7237573 ENCODE Processing Pipeline 8f8b89422ce2657a6b8287b6aff01572 https://www.encodeproject.org/files/ENCFF860BMK/@@download/ENCFF860BMK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF159KQV bigBed narrowPeak conservative idr thresholded peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF527MOR 627076 ENCODE Processing Pipeline f4afe2c5e14c4d9de7da5c0f4c646769 https://www.encodeproject.org/files/ENCFF159KQV/@@download/ENCFF159KQV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF180PDN bigWig signal p-value ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1, 2 ENCFF530BMT, ENCFF645CCA, ENCFF717JQH, ENCFF943MYJ 1292829994 ENCODE Processing Pipeline af09dfcb5004ad1274cf3bc96e4909dd https://www.encodeproject.org/files/ENCFF180PDN/@@download/ENCFF180PDN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF000VZX bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 1 316200936 Kevin Struhl, HMS 95d0ba4076b207e3ffffdbb23d7951dd https://www.encodeproject.org/files/ENCFF000VZX/@@download/ENCFF000VZX.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000VZY bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEV 1482819 Kevin Struhl, HMS d69de621e18108d9dc5aa51d91160d92 https://www.encodeproject.org/files/ENCFF000VZY/@@download/ENCFF000VZY.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000VZZ fastq reads ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 618237182 Kevin Struhl, HMS d776bf0aa786c19466e73ae7d8a3130d https://www.encodeproject.org/files/ENCFF000VZZ/@@download/ENCFF000VZZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, mild to moderate bottlenecking, inconsistent control read length, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000WAB fastq reads ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 611306329 Kevin Struhl, HMS 0f29d1ec550c76c07a58bb3e64b61613 https://www.encodeproject.org/files/ENCFF000WAB/@@download/ENCFF000WAB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, mild to moderate bottlenecking, inconsistent control read length, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000WAC bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 219202334 Kevin Struhl, HMS 5923ce5ea63beafeeead6b2e53bf247e https://www.encodeproject.org/files/ENCFF000WAC/@@download/ENCFF000WAC.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000WAE bigWig signal ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 159523650 Kevin Struhl, HMS cd01dd63f8dce3cb0dc86dfbd2ee7ce3 https://www.encodeproject.org/files/ENCFF000WAE/@@download/ENCFF000WAE.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001VEV bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 607937 Kevin Struhl, HMS f55bc8cd4c25fbd7bd1425355377e7b5 https://www.encodeproject.org/files/ENCFF001VEV/@@download/ENCFF001VEV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CPC bed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 315076 ENCODE Consortium Analysis Working Group f8e79da909dc1a5e6eb85eb558620f7e https://www.encodeproject.org/files/ENCFF002CPC/@@download/ENCFF002CPC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF103NWQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPC 710898 ENCODE Consortium 342ab2e90e0bad7adbc51d42c43ad3e7 https://www.encodeproject.org/files/ENCFF103NWQ/@@download/ENCFF103NWQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF920UGA bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF643CGH 216585698 ENCODE Processing Pipeline 1a60af2b8ce5ff29c9a1df6a3290dd0c https://www.encodeproject.org/files/ENCFF920UGA/@@download/ENCFF920UGA.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF498VCN bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF643CGH 561486475 ENCODE Processing Pipeline 1f3caf0b8587bfa601170d3656f1017c https://www.encodeproject.org/files/ENCFF498VCN/@@download/ENCFF498VCN.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF962YKV bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF643CGH 623490259 ENCODE Processing Pipeline 9c25fc03c86d96c597ce5e5472a82019 https://www.encodeproject.org/files/ENCFF962YKV/@@download/ENCFF962YKV.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF347TBE bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF643CGH 372351724 ENCODE Processing Pipeline 941eb79a74e0ee7914c5f25d208e2cdf https://www.encodeproject.org/files/ENCFF347TBE/@@download/ENCFF347TBE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF126JJU bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF807MUK 620472524 ENCODE Processing Pipeline a1dee2520981ff70a2dc0d79ea83364f https://www.encodeproject.org/files/ENCFF126JJU/@@download/ENCFF126JJU.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF058VAL bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF807MUK 216657710 ENCODE Processing Pipeline fd78fd9cc155a3733680efd72fd8020d https://www.encodeproject.org/files/ENCFF058VAL/@@download/ENCFF058VAL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF629CYS bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF807MUK 372527851 ENCODE Processing Pipeline d6a06149bcf000de42f68f7103c39a20 https://www.encodeproject.org/files/ENCFF629CYS/@@download/ENCFF629CYS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF966JJV bam unfiltered alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF807MUK 558953208 ENCODE Processing Pipeline fdcfe3f8dc49a7bceff6ac0169d2be9a https://www.encodeproject.org/files/ENCFF966JJV/@@download/ENCFF966JJV.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF271UAB bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 92495099 ENCODE Processing Pipeline 0870d243b5c7ca1c9e573f331579d961 https://www.encodeproject.org/files/ENCFF271UAB/@@download/ENCFF271UAB.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF939JTF bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 87118090 ENCODE Processing Pipeline 5518ee18ca0cf93e6d6cfcde36f1d48e https://www.encodeproject.org/files/ENCFF939JTF/@@download/ENCFF939JTF.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF112JWF bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058VAL, ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 256854772 ENCODE Processing Pipeline 77ecea8aa70265939d6bafc636309420 https://www.encodeproject.org/files/ENCFF112JWF/@@download/ENCFF112JWF.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF556ZPR bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF350IOX 10236657 ENCODE Processing Pipeline b3d995a70bd66735b8699580ace121fc https://www.encodeproject.org/files/ENCFF556ZPR/@@download/ENCFF556ZPR.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF467NRS bed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF350IOX, ENCFF655JXN, ENCFF911SLA 228205 ENCODE Processing Pipeline b44b4a58544f06561d144f4cb4004cef https://www.encodeproject.org/files/ENCFF467NRS/@@download/ENCFF467NRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF379LEY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF467NRS 478731 ENCODE Processing Pipeline 7c6c5b15e1be78a8e6d9970ca9475b40 https://www.encodeproject.org/files/ENCFF379LEY/@@download/ENCFF379LEY.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF105DRJ bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 187994142 ENCODE Processing Pipeline cfccc4fcdcfdef36f1f2ede0ecba942f https://www.encodeproject.org/files/ENCFF105DRJ/@@download/ENCFF105DRJ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF410EFM bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 175181466 ENCODE Processing Pipeline d5678df6e17179bd2a1194391e25e1da https://www.encodeproject.org/files/ENCFF410EFM/@@download/ENCFF410EFM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF655JXN bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 3243986 ENCODE Processing Pipeline 0dc3d0dfd191faaf756cd14b828a8fdf https://www.encodeproject.org/files/ENCFF655JXN/@@download/ENCFF655JXN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF911SLA bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 1155711 ENCODE Processing Pipeline 3ac3a421702105d770b9d7d562d971ee https://www.encodeproject.org/files/ENCFF911SLA/@@download/ENCFF911SLA.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF363BLT bed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF350IOX, ENCFF655JXN, ENCFF911SLA 140197 ENCODE Processing Pipeline 5c4af83d23088c2069829e094fab54a3 https://www.encodeproject.org/files/ENCFF363BLT/@@download/ENCFF363BLT.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF617QWH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF363BLT 275016 ENCODE Processing Pipeline a4ee30c662127bc3edc3e2959ebb59ce https://www.encodeproject.org/files/ENCFF617QWH/@@download/ENCFF617QWH.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF183ERM bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS 174149075 ENCODE Processing Pipeline 55782dfdaeb2f4d7baeb727486538fe4 https://www.encodeproject.org/files/ENCFF183ERM/@@download/ENCFF183ERM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF623HYS bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058VAL, ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 176758250 ENCODE Processing Pipeline 045c8b17434907f7677c417deaa3eff4 https://www.encodeproject.org/files/ENCFF623HYS/@@download/ENCFF623HYS.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF905UCS bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF655JXN 8401884 ENCODE Processing Pipeline beada5a58b3a27d322e55b6c46513205 https://www.encodeproject.org/files/ENCFF905UCS/@@download/ENCFF905UCS.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF239BIV bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS, ENCFF920UGA 255956077 ENCODE Processing Pipeline 2bfc9f2f99af9a67f2103b6ca42c48fb https://www.encodeproject.org/files/ENCFF239BIV/@@download/ENCFF239BIV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF350IOX bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058VAL, ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 4165315 ENCODE Processing Pipeline 134fda1e5482ece72d4872bb4755708b https://www.encodeproject.org/files/ENCFF350IOX/@@download/ENCFF350IOX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF311TXJ bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF911SLA 2491649 ENCODE Processing Pipeline c57d9ce1eb02ebc43f41a155b5d6778f https://www.encodeproject.org/files/ENCFF311TXJ/@@download/ENCFF311TXJ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF420UUZ bigWig fold change over control ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF920UGA 86475869 ENCODE Processing Pipeline cf1618219614ba6ea01ec8faf1e0bd13 https://www.encodeproject.org/files/ENCFF420UUZ/@@download/ENCFF420UUZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF006ASD bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129RNC 10239585 ENCODE Processing Pipeline fbf3aa0f17865e52a4673ee6c4203785 https://www.encodeproject.org/files/ENCFF006ASD/@@download/ENCFF006ASD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF616TUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF746RQR 276921 ENCODE Processing Pipeline f33a6211a6b7e9948c12fa5ad535dec6 https://www.encodeproject.org/files/ENCFF616TUF/@@download/ENCFF616TUF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF510NDO bed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129RNC, ENCFF419RSJ, ENCFF647COW, ENCFF886QMO 223243 ENCODE Processing Pipeline 983aa6aea5376f2ade8580af241899ba https://www.encodeproject.org/files/ENCFF510NDO/@@download/ENCFF510NDO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF895UDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF510NDO 472330 ENCODE Processing Pipeline 42d06a0d62d4a6d014b7b7a29367b3e7 https://www.encodeproject.org/files/ENCFF895UDQ/@@download/ENCFF895UDQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF273HRD bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS 187897705 ENCODE Processing Pipeline b2da0a9ebc121896ee4b3315ed48b463 https://www.encodeproject.org/files/ENCFF273HRD/@@download/ENCFF273HRD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF619WFM bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF920UGA 92484150 ENCODE Processing Pipeline 5c8d3e1ff485c46287729d225be46d26 https://www.encodeproject.org/files/ENCFF619WFM/@@download/ENCFF619WFM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF814DIE bigWig signal p-value ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS, ENCFF920UGA 176674514 ENCODE Processing Pipeline 1a21b55b341281c632e8ae6d58ad5bba https://www.encodeproject.org/files/ENCFF814DIE/@@download/ENCFF814DIE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF886QMO bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF920UGA 1153183 ENCODE Processing Pipeline 48c52eb3504dc4c4405494b441d8b7cd https://www.encodeproject.org/files/ENCFF886QMO/@@download/ENCFF886QMO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF647COW bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS 3226092 ENCODE Processing Pipeline 0060c21df267e3c027a2e1b67a81a0dd https://www.encodeproject.org/files/ENCFF647COW/@@download/ENCFF647COW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF522KNH bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF647COW 8369686 ENCODE Processing Pipeline ba16adab7cf3f25a17c1d53cdea01af5 https://www.encodeproject.org/files/ENCFF522KNH/@@download/ENCFF522KNH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF004JPO bigBed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF886QMO 2488515 ENCODE Processing Pipeline 141f542e79150149006c8a68f9a1a6d3 https://www.encodeproject.org/files/ENCFF004JPO/@@download/ENCFF004JPO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF129RNC bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347TBE, ENCFF477ZKJ, ENCFF710SMS, ENCFF920UGA 4163046 ENCODE Processing Pipeline a1e1f2314b7b96e5976879e1388517b3 https://www.encodeproject.org/files/ENCFF129RNC/@@download/ENCFF129RNC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF746RQR bed narrowPeak conservative idr thresholded peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129RNC, ENCFF419RSJ, ENCFF647COW, ENCFF886QMO 141224 ENCODE Processing Pipeline d57c73e250904e603c3796c030552d51 https://www.encodeproject.org/files/ENCFF746RQR/@@download/ENCFF746RQR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NMV bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NNB 455086473 Richard Myers, HAIB 565fd85bd7e5ea5ff54857cef4235c01 https://www.encodeproject.org/files/ENCFF000NMV/@@download/ENCFF000NMV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NMW bigBed broadPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TUZ 291471 Richard Myers, HAIB 04bda01c932af96599ceb4f6b87b7ed9 https://www.encodeproject.org/files/ENCFF000NMW/@@download/ENCFF000NMW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NMX bigBed broadPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TVA 224507 Richard Myers, HAIB 078786077127ae66ace910c9eb9bfdaf https://www.encodeproject.org/files/ENCFF000NMX/@@download/ENCFF000NMX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NMY bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NNF 838597533 Richard Myers, HAIB 4c1a137c8b937ca6ad2827251f580f34 https://www.encodeproject.org/files/ENCFF000NMY/@@download/ENCFF000NMY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NMZ bigWig raw signal ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 5845826 Richard Myers, HAIB 3015fed0ff522bce6483c67edf663863 https://www.encodeproject.org/files/ENCFF000NMZ/@@download/ENCFF000NMZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NNA bigWig raw signal ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 17604341 Richard Myers, HAIB 6d4c104a9e6964fadc88b5c5d29d528e https://www.encodeproject.org/files/ENCFF000NNA/@@download/ENCFF000NNA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NNB fastq reads ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 536913730 Richard Myers, HAIB 9a947031fd6d1418018aaa0f2c8f5833 https://www.encodeproject.org/files/ENCFF000NNB/@@download/ENCFF000NNB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NNM/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NNF fastq reads ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1284725117 Richard Myers, HAIB 261671c80d9ffaaffa7630f091ebd3b9 https://www.encodeproject.org/files/ENCFF000NNF/@@download/ENCFF000NNF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NNN/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001TUZ bed broadPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 119833 Richard Myers, HAIB 1bb18584595667a909007587fe70364e https://www.encodeproject.org/files/ENCFF001TUZ/@@download/ENCFF001TUZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001TVA bed broadPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 110539 Richard Myers, HAIB 55d2313ae2cdb411f7dd2a2dc44c5bf2 https://www.encodeproject.org/files/ENCFF001TVA/@@download/ENCFF001TVA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CGM bed narrowPeak optimal idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 216224 ENCODE Consortium Analysis Working Group 37fb51b44639c4bd578d332ce6d50cbc https://www.encodeproject.org/files/ENCFF002CGM/@@download/ENCFF002CGM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF561MMK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGM 570534 ENCODE Consortium 39ce4c75cf4549676b9b2046642048e6 https://www.encodeproject.org/files/ENCFF561MMK/@@download/ENCFF561MMK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF755GJA bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNB, ENCFF643CGH 424117995 ENCODE Processing Pipeline 5b1cab4882d1fa625aecd5ed8debac49 https://www.encodeproject.org/files/ENCFF755GJA/@@download/ENCFF755GJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF968HPB bam unfiltered alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNB, ENCFF643CGH 699150745 ENCODE Processing Pipeline 09635ec910630f1407c03ba8b8e5a725 https://www.encodeproject.org/files/ENCFF968HPB/@@download/ENCFF968HPB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF788WDL bam unfiltered alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNF, ENCFF643CGH 1523895753 ENCODE Processing Pipeline 95f40dd1af787cfe1f0f8a46fd1ee8c8 https://www.encodeproject.org/files/ENCFF788WDL/@@download/ENCFF788WDL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF527JSO bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNF, ENCFF643CGH 553184307 ENCODE Processing Pipeline e641cda16e29bc50c3c4a6fe19e3ee53 https://www.encodeproject.org/files/ENCFF527JSO/@@download/ENCFF527JSO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF665XOJ bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNB, ENCFF807MUK 424502908 ENCODE Processing Pipeline 2ab44fe99bf1e8a97552d78ad2a4c389 https://www.encodeproject.org/files/ENCFF665XOJ/@@download/ENCFF665XOJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF237UBZ bam unfiltered alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNB, ENCFF807MUK 697081127 ENCODE Processing Pipeline 326cc581555c558947f1d2a37124f348 https://www.encodeproject.org/files/ENCFF237UBZ/@@download/ENCFF237UBZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF790CVQ bam unfiltered alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNF, ENCFF807MUK 1519565633 ENCODE Processing Pipeline fb6a35621adc3455ed8753b01ad35b05 https://www.encodeproject.org/files/ENCFF790CVQ/@@download/ENCFF790CVQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF033CIS bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNF, ENCFF807MUK 553613500 ENCODE Processing Pipeline 4bcce1957dc6bb6a1cdb778ce7d8ce87 https://www.encodeproject.org/files/ENCFF033CIS/@@download/ENCFF033CIS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF343VQA bigWig signal p-value ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF755GJA, ENCFF942JER 225205278 ENCODE Processing Pipeline d2825f15aa78e4df8b2c743724ec1bec https://www.encodeproject.org/files/ENCFF343VQA/@@download/ENCFF343VQA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF904ZBR bigWig signal p-value ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF428QRM, ENCFF527JSO 350099448 ENCODE Processing Pipeline c9732cdcb0b18fc85b79f8055dcffa5e https://www.encodeproject.org/files/ENCFF904ZBR/@@download/ENCFF904ZBR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF894HFP bigWig fold change over control ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF428QRM, ENCFF527JSO, ENCFF755GJA, ENCFF942JER 422363827 ENCODE Processing Pipeline 7536467520df97f4143c6523550f1afd https://www.encodeproject.org/files/ENCFF894HFP/@@download/ENCFF894HFP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF189NZN bigWig fold change over control ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF428QRM, ENCFF527JSO 207647304 ENCODE Processing Pipeline 3ec43f250dbd64e7a96f23c5d90553c7 https://www.encodeproject.org/files/ENCFF189NZN/@@download/ENCFF189NZN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF597WUW bigWig signal p-value ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF428QRM, ENCFF527JSO, ENCFF755GJA, ENCFF942JER 525048203 ENCODE Processing Pipeline bcb496dd8fe785b8b94fccb5152bcb13 https://www.encodeproject.org/files/ENCFF597WUW/@@download/ENCFF597WUW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF155EOT bigWig fold change over control ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF755GJA, ENCFF942JER 159662498 ENCODE Processing Pipeline e3cf33f703f536d01d6eba8069f6f6d3 https://www.encodeproject.org/files/ENCFF155EOT/@@download/ENCFF155EOT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF433YOB bigBed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF435YKA 7559164 ENCODE Processing Pipeline d4f338e824d205ea8a04946edfd8a54c https://www.encodeproject.org/files/ENCFF433YOB/@@download/ENCFF433YOB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF723BZV bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF755GJA, ENCFF942JER 3095614 ENCODE Processing Pipeline cc487b4cceae393151004eaee17cdc12 https://www.encodeproject.org/files/ENCFF723BZV/@@download/ENCFF723BZV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF937VQZ bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF428QRM, ENCFF527JSO, ENCFF755GJA, ENCFF942JER 4772270 ENCODE Processing Pipeline db52a8325f5a83b6c8a56d779b178742 https://www.encodeproject.org/files/ENCFF937VQZ/@@download/ENCFF937VQZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF933BJO bigBed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF723BZV 6192847 ENCODE Processing Pipeline 9e9ca0f6f90ded5075b714af1efc49c0 https://www.encodeproject.org/files/ENCFF933BJO/@@download/ENCFF933BJO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF648ULE bed narrowPeak conservative idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF435YKA, ENCFF723BZV, ENCFF937VQZ 168749 ENCODE Processing Pipeline 29fe6af81e55b8a3b82a99c0af63c1a7 https://www.encodeproject.org/files/ENCFF648ULE/@@download/ENCFF648ULE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF156BXS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF648ULE 368487 ENCODE Processing Pipeline f58a984c8d510f749d6984c50ae66569 https://www.encodeproject.org/files/ENCFF156BXS/@@download/ENCFF156BXS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF435YKA bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF428QRM, ENCFF527JSO 3789703 ENCODE Processing Pipeline 4e46e1ed1fabb14376589b152bbe5d50 https://www.encodeproject.org/files/ENCFF435YKA/@@download/ENCFF435YKA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF738PEI bigBed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF937VQZ 11039067 ENCODE Processing Pipeline 36ee894ae33866d59c043c4fa9814580 https://www.encodeproject.org/files/ENCFF738PEI/@@download/ENCFF738PEI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF293OHT bed narrowPeak optimal idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF435YKA, ENCFF723BZV, ENCFF937VQZ 202098 ENCODE Processing Pipeline e27fd5b69bc046854d08409bfffda5f1 https://www.encodeproject.org/files/ENCFF293OHT/@@download/ENCFF293OHT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF319HVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF293OHT 421562 ENCODE Processing Pipeline af09d65698b5eee091bcf4ceaa2946ec https://www.encodeproject.org/files/ENCFF319HVM/@@download/ENCFF319HVM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF799PBS bigWig fold change over control ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF665XOJ 159131061 ENCODE Processing Pipeline 264e68c7c5e8ac7dd9b4c82bb6705b8f https://www.encodeproject.org/files/ENCFF799PBS/@@download/ENCFF799PBS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF253KIE bigWig signal p-value ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF033CIS, ENCFF102JFM, ENCFF174UCM, ENCFF665XOJ 483247965 ENCODE Processing Pipeline 56f9486e907b183f397da79a5494a8ba https://www.encodeproject.org/files/ENCFF253KIE/@@download/ENCFF253KIE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF384PJH bigWig signal p-value ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF665XOJ 238225107 ENCODE Processing Pipeline e279268759e6eab1b03f47ea56389b66 https://www.encodeproject.org/files/ENCFF384PJH/@@download/ENCFF384PJH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF510YHZ bigWig signal p-value ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF033CIS, ENCFF174UCM 312332255 ENCODE Processing Pipeline 8b8e6c688d29e9acfdb0432780c12090 https://www.encodeproject.org/files/ENCFF510YHZ/@@download/ENCFF510YHZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF063IJJ bigWig fold change over control ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF033CIS, ENCFF174UCM 209442380 ENCODE Processing Pipeline 1200d641c91e02cd822d1d68b79e89be https://www.encodeproject.org/files/ENCFF063IJJ/@@download/ENCFF063IJJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF527DXT bigWig fold change over control ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF033CIS, ENCFF102JFM, ENCFF174UCM, ENCFF665XOJ 422778962 ENCODE Processing Pipeline 579d75f0cb8c26a00da147b7a35757a4 https://www.encodeproject.org/files/ENCFF527DXT/@@download/ENCFF527DXT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF417EBM bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF665XOJ 3096435 ENCODE Processing Pipeline 4b61c33658f64cef00a3973ea2771d60 https://www.encodeproject.org/files/ENCFF417EBM/@@download/ENCFF417EBM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF576VMW bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF033CIS, ENCFF102JFM, ENCFF174UCM, ENCFF665XOJ 4784855 ENCODE Processing Pipeline 151c41162ec040d147c004f1c4adfbb4 https://www.encodeproject.org/files/ENCFF576VMW/@@download/ENCFF576VMW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF261SZK bigBed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF417EBM 6195650 ENCODE Processing Pipeline 9910988d1d5af043df62a6dcec99bf2d https://www.encodeproject.org/files/ENCFF261SZK/@@download/ENCFF261SZK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF131RIS bigBed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF784YSB 7562611 ENCODE Processing Pipeline c12e8e1eba4e326c17452bab39361072 https://www.encodeproject.org/files/ENCFF131RIS/@@download/ENCFF131RIS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF555ZHN bigBed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF576VMW 11043253 ENCODE Processing Pipeline f6f4f8b83b5272f5eece73e3b3d4801a https://www.encodeproject.org/files/ENCFF555ZHN/@@download/ENCFF555ZHN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF784YSB bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF033CIS, ENCFF174UCM 3792766 ENCODE Processing Pipeline 8f111d3686ef366f4aa8d1681490076c https://www.encodeproject.org/files/ENCFF784YSB/@@download/ENCFF784YSB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF079RXE bed narrowPeak conservative idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF417EBM, ENCFF576VMW, ENCFF784YSB 167244 ENCODE Processing Pipeline 200ef3ae86310aa71f15a1dca62aadd5 https://www.encodeproject.org/files/ENCFF079RXE/@@download/ENCFF079RXE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF585YYZ bed narrowPeak optimal idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF417EBM, ENCFF576VMW, ENCFF784YSB 206771 ENCODE Processing Pipeline f00ca8d99f488bc57ab4e492958d8b45 https://www.encodeproject.org/files/ENCFF585YYZ/@@download/ENCFF585YYZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF226IUM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF079RXE 364838 ENCODE Processing Pipeline 78c45759583ae61a5808baecc60df837 https://www.encodeproject.org/files/ENCFF226IUM/@@download/ENCFF226IUM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF361SBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF585YYZ 425996 ENCODE Processing Pipeline 74b3574fb7d46b33212c245bc12707be https://www.encodeproject.org/files/ENCFF361SBP/@@download/ENCFF361SBP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF816PKD fastq reads ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 1 101 paired-ended 2 ENCFF052DGQ 2797435715 Michael Snyder, Stanford e30094df04bb64dc864abebbc36c23a7 SRA:SRR6213588 https://www.encodeproject.org/files/ENCFF816PKD/@@download/ENCFF816PKD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF052DGQ fastq reads ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 1 101 paired-ended 1 ENCFF816PKD 2774299100 Michael Snyder, Stanford 963d8ac24960853e5f2233d5877f2fdc SRA:SRR6213588 https://www.encodeproject.org/files/ENCFF052DGQ/@@download/ENCFF052DGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF491FIO fastq reads ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 1 101 paired-ended 1 ENCFF916RIL 2163084619 Michael Snyder, Stanford b28eaae155ea2cc1986283be0f84ca0b SRA:SRR6213589 https://www.encodeproject.org/files/ENCFF491FIO/@@download/ENCFF491FIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF916RIL fastq reads ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 1 101 paired-ended 2 ENCFF491FIO 2187332876 Michael Snyder, Stanford c5bb78dfc2448f74cdf1b614f94339a3 SRA:SRR6213589 https://www.encodeproject.org/files/ENCFF916RIL/@@download/ENCFF916RIL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF482NBS bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 101 ENCFF491FIO, ENCFF643CGH, ENCFF916RIL 3814770458 ENCODE Processing Pipeline 01826994f247ecb0d3885e623d1a90b3 https://www.encodeproject.org/files/ENCFF482NBS/@@download/ENCFF482NBS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF805YLL bam unfiltered alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 101 ENCFF491FIO, ENCFF807MUK, ENCFF916RIL 4442019493 ENCODE Processing Pipeline ca1b0c935628d27f920c1c564cce3bb8 https://www.encodeproject.org/files/ENCFF805YLL/@@download/ENCFF805YLL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF384BKC bam unfiltered alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 101 ENCFF491FIO, ENCFF643CGH, ENCFF916RIL 4449385322 ENCODE Processing Pipeline e93493ec09cd3c9250c5583304eeb56d https://www.encodeproject.org/files/ENCFF384BKC/@@download/ENCFF384BKC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF505PWG bam unfiltered alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 101 ENCFF052DGQ, ENCFF643CGH, ENCFF816PKD 5593005602 ENCODE Processing Pipeline 43679cfe2a284d2b31c916408402261e https://www.encodeproject.org/files/ENCFF505PWG/@@download/ENCFF505PWG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF761IZB bam unfiltered alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 101 ENCFF052DGQ, ENCFF807MUK, ENCFF816PKD 5584105313 ENCODE Processing Pipeline c495d457f17c3b8138dfea1eba4112c4 https://www.encodeproject.org/files/ENCFF761IZB/@@download/ENCFF761IZB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF863GDL bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 101 ENCFF491FIO, ENCFF807MUK, ENCFF916RIL 3814154589 ENCODE Processing Pipeline 808d1a47865afa9712cd5431464dba2c https://www.encodeproject.org/files/ENCFF863GDL/@@download/ENCFF863GDL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF930CAN bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 101 ENCFF052DGQ, ENCFF643CGH, ENCFF816PKD 4805566200 ENCODE Processing Pipeline 5262450eb5494f0479bd863ed55d23c7 https://www.encodeproject.org/files/ENCFF930CAN/@@download/ENCFF930CAN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF422QKP bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 101 ENCFF052DGQ, ENCFF807MUK, ENCFF816PKD 4804983657 ENCODE Processing Pipeline 99a8966e0518c9bb7570502e4f4a4099 https://www.encodeproject.org/files/ENCFF422QKP/@@download/ENCFF422QKP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF106FAW bigWig signal p-value ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF930CAN 1297146812 ENCODE Processing Pipeline d0fd801462808428bb2dc8ccc7697804 https://www.encodeproject.org/files/ENCFF106FAW/@@download/ENCFF106FAW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF962KTB bigWig fold change over control ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF482NBS 1272480964 ENCODE Processing Pipeline 536bbb9ae1354229d263db372f1a1b85 https://www.encodeproject.org/files/ENCFF962KTB/@@download/ENCFF962KTB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF656URY bigWig signal p-value ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF482NBS 1204597056 ENCODE Processing Pipeline 9ad932cabb46d69231284e3ed726678c https://www.encodeproject.org/files/ENCFF656URY/@@download/ENCFF656URY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF297HWV bigWig signal p-value ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF482NBS, ENCFF930CAN 1656017866 ENCODE Processing Pipeline 5fa8a8b99f48391fba6f7d366d94b306 https://www.encodeproject.org/files/ENCFF297HWV/@@download/ENCFF297HWV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF091KEQ bigWig fold change over control ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF930CAN 1444514724 ENCODE Processing Pipeline 7d49ea69e5e924e4a387e7260a452128 https://www.encodeproject.org/files/ENCFF091KEQ/@@download/ENCFF091KEQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF118ULV bigBed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF593MJR 11249406 ENCODE Processing Pipeline 9f47b9be1b87af503b02cf61ca2bb1ea https://www.encodeproject.org/files/ENCFF118ULV/@@download/ENCFF118ULV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF371LVM bigBed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF257ADA 11051539 ENCODE Processing Pipeline bc3377fb6fbc3aa3b2d44f3727b5c661 https://www.encodeproject.org/files/ENCFF371LVM/@@download/ENCFF371LVM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF444CQQ bed narrowPeak optimal idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF257ADA, ENCFF419RSJ, ENCFF582KKC, ENCFF593MJR 44720 ENCODE Processing Pipeline 7ec928e76e1c4db6ad4ccb9dfea2c0dc https://www.encodeproject.org/files/ENCFF444CQQ/@@download/ENCFF444CQQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF593MJR bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF482NBS 6233342 ENCODE Processing Pipeline 16971b791343fee7a35e610304050725 https://www.encodeproject.org/files/ENCFF593MJR/@@download/ENCFF593MJR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF257ADA bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF482NBS, ENCFF930CAN 7037394 ENCODE Processing Pipeline 36ae5991ce79251689d4dbd3dcdf5bec https://www.encodeproject.org/files/ENCFF257ADA/@@download/ENCFF257ADA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF928KNW bigBed narrowPeak conservative idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF202THU 105286 ENCODE Processing Pipeline daebe417a05d9b8041e6fd0914323109 https://www.encodeproject.org/files/ENCFF928KNW/@@download/ENCFF928KNW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF450KFO bigWig fold change over control ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF482NBS, ENCFF930CAN 1931960800 ENCODE Processing Pipeline 294ee3ef61f2375b26f12b985a2dfb1a https://www.encodeproject.org/files/ENCFF450KFO/@@download/ENCFF450KFO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF582KKC bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF930CAN 6514249 ENCODE Processing Pipeline abe9d3fecd768804a796f0a0267185f1 https://www.encodeproject.org/files/ENCFF582KKC/@@download/ENCFF582KKC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF550DLY bigBed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF582KKC 11210269 ENCODE Processing Pipeline 0c3a01dbdf19acf3731b840090b9aaf4 https://www.encodeproject.org/files/ENCFF550DLY/@@download/ENCFF550DLY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF202THU bed narrowPeak conservative idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF257ADA, ENCFF419RSJ, ENCFF582KKC, ENCFF593MJR 30765 ENCODE Processing Pipeline dcf96f022f52b147bf5970d0747df971 https://www.encodeproject.org/files/ENCFF202THU/@@download/ENCFF202THU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF046VHU bigBed narrowPeak optimal idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF444CQQ 126416 ENCODE Processing Pipeline 0335c01204aa45abb63e941e9872185a https://www.encodeproject.org/files/ENCFF046VHU/@@download/ENCFF046VHU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF991BGW bigWig signal p-value ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF422QKP, ENCFF863GDL 1699559428 ENCODE Processing Pipeline 9ca8e82eaf0588f4bc7e22633b0e0ead https://www.encodeproject.org/files/ENCFF991BGW/@@download/ENCFF991BGW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF591KGF bigWig fold change over control ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF863GDL 1286408089 ENCODE Processing Pipeline 90073bda7119c988696917bbed13404d https://www.encodeproject.org/files/ENCFF591KGF/@@download/ENCFF591KGF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF934NER bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF422QKP 6517994 ENCODE Processing Pipeline 33cbc571cceff3b9bcc55432729dadc3 https://www.encodeproject.org/files/ENCFF934NER/@@download/ENCFF934NER.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF300FCZ bigBed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF934NER 11191486 ENCODE Processing Pipeline b051f3aaa19a8af702f01b636de631f6 https://www.encodeproject.org/files/ENCFF300FCZ/@@download/ENCFF300FCZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF191TMG bigWig signal p-value ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF863GDL 1295135198 ENCODE Processing Pipeline 423b3393c7c940cea4ce3d2496cc737e https://www.encodeproject.org/files/ENCFF191TMG/@@download/ENCFF191TMG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF707BDZ bigWig signal p-value ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF422QKP 1243983271 ENCODE Processing Pipeline 12d3fa6da67680a9acc75b20f5e58eef https://www.encodeproject.org/files/ENCFF707BDZ/@@download/ENCFF707BDZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF981ZFB bigWig fold change over control ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF422QKP 1415007031 ENCODE Processing Pipeline 6f52ab495ddca62070d791918e97720d https://www.encodeproject.org/files/ENCFF981ZFB/@@download/ENCFF981ZFB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF435TEK bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF863GDL 6236120 ENCODE Processing Pipeline 183cf762326eba5c2fd920ddab40c7f3 https://www.encodeproject.org/files/ENCFF435TEK/@@download/ENCFF435TEK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF754FWR bigBed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF971KSX 11003390 ENCODE Processing Pipeline 228cfcf91551f53ba29017a76b70f6bb https://www.encodeproject.org/files/ENCFF754FWR/@@download/ENCFF754FWR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF971KSX bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF422QKP, ENCFF863GDL 7002770 ENCODE Processing Pipeline 4faea665bed6a784628f09347caa9308 https://www.encodeproject.org/files/ENCFF971KSX/@@download/ENCFF971KSX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF067XJH bigWig fold change over control ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF422QKP, ENCFF863GDL 1930903631 ENCODE Processing Pipeline bdead323d8ca612be7f5fb9217ae7afe https://www.encodeproject.org/files/ENCFF067XJH/@@download/ENCFF067XJH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF156WMH bigBed narrowPeak optimal idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF444SHN 124271 ENCODE Processing Pipeline cd11d225709da882d37cd7b3429b941e https://www.encodeproject.org/files/ENCFF156WMH/@@download/ENCFF156WMH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF809HXK bigBed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF435TEK 11240406 ENCODE Processing Pipeline 5d9c795187a06eb2a78e4eb7a6cabf25 https://www.encodeproject.org/files/ENCFF809HXK/@@download/ENCFF809HXK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF282STV bed narrowPeak conservative idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF435TEK, ENCFF934NER, ENCFF971KSX 30553 ENCODE Processing Pipeline 9cf5a1b2e46835d4dc04dcfc8ae3af37 https://www.encodeproject.org/files/ENCFF282STV/@@download/ENCFF282STV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF632CWK bigBed narrowPeak conservative idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF282STV 103698 ENCODE Processing Pipeline 288bf4c31b2fb40140a8035f977ab65a https://www.encodeproject.org/files/ENCFF632CWK/@@download/ENCFF632CWK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF444SHN bed narrowPeak optimal idr thresholded peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1, 2 ENCFF001TDO, ENCFF435TEK, ENCFF934NER, ENCFF971KSX 44237 ENCODE Processing Pipeline f64b811e5127f65dac36056bf560d393 https://www.encodeproject.org/files/ENCFF444SHN/@@download/ENCFF444SHN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF937ADB fastq reads ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF220JCD 2840383356 Michael Snyder, Stanford d1a2095c06a112e91347dc80f6724551 SRA:SRR6213917 https://www.encodeproject.org/files/ENCFF937ADB/@@download/ENCFF937ADB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF569SLS fastq reads ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF784JLB 2905649472 Michael Snyder, Stanford 0c53faac2f0dc74456b2b75d8bdf02dc SRA:SRR6213918 https://www.encodeproject.org/files/ENCFF569SLS/@@download/ENCFF569SLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF784JLB fastq reads ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF569SLS 2974565030 Michael Snyder, Stanford 36aba8ff1868e50f7685f8538625de26 SRA:SRR6213918 https://www.encodeproject.org/files/ENCFF784JLB/@@download/ENCFF784JLB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF220JCD fastq reads ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF937ADB 2908714531 Michael Snyder, Stanford 4442b511bb30565d774556d44ee097c5 SRA:SRR6213917 https://www.encodeproject.org/files/ENCFF220JCD/@@download/ENCFF220JCD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF846XRU bam unfiltered alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF220JCD, ENCFF643CGH, ENCFF937ADB 5838320308 ENCODE Processing Pipeline 76004d47836f285fe3d9c24fb3badd91 https://www.encodeproject.org/files/ENCFF846XRU/@@download/ENCFF846XRU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF347NTF bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF220JCD, ENCFF643CGH, ENCFF937ADB 4606239979 ENCODE Processing Pipeline 5d062dd05ba3264bbb642548aee027b3 https://www.encodeproject.org/files/ENCFF347NTF/@@download/ENCFF347NTF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF264FCX bam unfiltered alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF220JCD, ENCFF807MUK, ENCFF937ADB 5834027544 ENCODE Processing Pipeline d884af30ac76184ad86273b9e4db4396 https://www.encodeproject.org/files/ENCFF264FCX/@@download/ENCFF264FCX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF594YRH bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF220JCD, ENCFF807MUK, ENCFF937ADB 4603249726 ENCODE Processing Pipeline fac466c3ab849fbebd46ca54503440de https://www.encodeproject.org/files/ENCFF594YRH/@@download/ENCFF594YRH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF125UUF bam unfiltered alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF569SLS, ENCFF784JLB, ENCFF807MUK 5970747901 ENCODE Processing Pipeline d778b4253978fde513646059c3bcb6f2 https://www.encodeproject.org/files/ENCFF125UUF/@@download/ENCFF125UUF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF293YXI bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF569SLS, ENCFF784JLB, ENCFF807MUK 4817668032 ENCODE Processing Pipeline 667214efb0716db24a4b1313787ff052 https://www.encodeproject.org/files/ENCFF293YXI/@@download/ENCFF293YXI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF848ILW bam unfiltered alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF569SLS, ENCFF643CGH, ENCFF784JLB 5975775417 ENCODE Processing Pipeline 6cd61cf5430e67f25e1aef48015602c4 https://www.encodeproject.org/files/ENCFF848ILW/@@download/ENCFF848ILW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF939QHA bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF569SLS, ENCFF643CGH, ENCFF784JLB 4820850387 ENCODE Processing Pipeline ae9ec2b7300ed4125b3a56f3efca3f63 https://www.encodeproject.org/files/ENCFF939QHA/@@download/ENCFF939QHA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF619NBL bigWig signal p-value ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF293YXI 1207584800 ENCODE Processing Pipeline 3ed69f1384d52a91bd69d8665b458d62 https://www.encodeproject.org/files/ENCFF619NBL/@@download/ENCFF619NBL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF582ONJ bigWig signal p-value ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594YRH 1333028506 ENCODE Processing Pipeline fed47add5e6eb2aa25bbe0af0810f4e3 https://www.encodeproject.org/files/ENCFF582ONJ/@@download/ENCFF582ONJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF896HWA bigWig fold change over control ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF293YXI 1431137406 ENCODE Processing Pipeline feb666ec470b5ed1b7a44fd1d3a5d5a5 https://www.encodeproject.org/files/ENCFF896HWA/@@download/ENCFF896HWA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF203SUX bigWig fold change over control ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF293YXI, ENCFF594YRH 1968070243 ENCODE Processing Pipeline 1025b2cbd74c6db5546851e7f147eecd https://www.encodeproject.org/files/ENCFF203SUX/@@download/ENCFF203SUX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF315AMY bigWig signal p-value ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF293YXI, ENCFF594YRH 1800144523 ENCODE Processing Pipeline 6dd394792416ac0d43227a39f2452314 https://www.encodeproject.org/files/ENCFF315AMY/@@download/ENCFF315AMY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF758DJP bigWig fold change over control ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594YRH 1413308674 ENCODE Processing Pipeline 7db410d7044d08a4bfb001d0f8087417 https://www.encodeproject.org/files/ENCFF758DJP/@@download/ENCFF758DJP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF984YVX bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF293YXI 6693325 ENCODE Processing Pipeline 25a5cb7b5f66cee0938f2970487e99df https://www.encodeproject.org/files/ENCFF984YVX/@@download/ENCFF984YVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF720XGM bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF293YXI, ENCFF594YRH 7116645 ENCODE Processing Pipeline fa60a7ce3a34ce461d6d83e6d4fc0027 https://www.encodeproject.org/files/ENCFF720XGM/@@download/ENCFF720XGM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF933RNJ bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594YRH 6614109 ENCODE Processing Pipeline d7a27c64ad7bc2439c1bc834ab069467 https://www.encodeproject.org/files/ENCFF933RNJ/@@download/ENCFF933RNJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF430HNY bigBed narrowPeak optimal idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF068QHA 247462 ENCODE Processing Pipeline de05f539c968814f7999269c20003ef3 https://www.encodeproject.org/files/ENCFF430HNY/@@download/ENCFF430HNY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF557PEE bigBed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF933RNJ 11213479 ENCODE Processing Pipeline 2301cff08186bbc6a17556987063dc29 https://www.encodeproject.org/files/ENCFF557PEE/@@download/ENCFF557PEE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF791RWG bed narrowPeak conservative idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF720XGM, ENCFF933RNJ, ENCFF984YVX 76950 ENCODE Processing Pipeline ac2443c58a40604c5b4d1b64d197fe27 https://www.encodeproject.org/files/ENCFF791RWG/@@download/ENCFF791RWG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF287XYS bigBed narrowPeak conservative idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF791RWG 205403 ENCODE Processing Pipeline 3d949c80464db16077096f3b4fe9db1b https://www.encodeproject.org/files/ENCFF287XYS/@@download/ENCFF287XYS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF854KVF bigBed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF984YVX 11198151 ENCODE Processing Pipeline 1fdadf289d9f1a9b04670f54f152deaa https://www.encodeproject.org/files/ENCFF854KVF/@@download/ENCFF854KVF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF068QHA bed narrowPeak optimal idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF720XGM, ENCFF933RNJ, ENCFF984YVX 103443 ENCODE Processing Pipeline 27a4bb84093b62f0d09071bee162af84 https://www.encodeproject.org/files/ENCFF068QHA/@@download/ENCFF068QHA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF723PFX bigBed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF720XGM 13134043 ENCODE Processing Pipeline 282d582b510ced2dac41c6937f343e53 https://www.encodeproject.org/files/ENCFF723PFX/@@download/ENCFF723PFX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF266KYB bigWig signal p-value ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF347NTF 1359981110 ENCODE Processing Pipeline a4692304475d790cc5e76fd3fcceb7db https://www.encodeproject.org/files/ENCFF266KYB/@@download/ENCFF266KYB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF424QYQ bigWig signal p-value ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF939QHA 1497140973 ENCODE Processing Pipeline 9d39bac72aa6cf664f45588365bc5e7d https://www.encodeproject.org/files/ENCFF424QYQ/@@download/ENCFF424QYQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF096SHP bigWig signal p-value ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347NTF, ENCFF939QHA 1923233992 ENCODE Processing Pipeline aafe654e28fa5a6ff9db4b8a59d115bd https://www.encodeproject.org/files/ENCFF096SHP/@@download/ENCFF096SHP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF242JDI bigWig fold change over control ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF347NTF 1409465641 ENCODE Processing Pipeline 3cb7b0b6007dbd40842eed26b4aa0f5b https://www.encodeproject.org/files/ENCFF242JDI/@@download/ENCFF242JDI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF122VKP bigWig fold change over control ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF939QHA 1434866584 ENCODE Processing Pipeline 801086a414089bb2856ca7e224c3f39e https://www.encodeproject.org/files/ENCFF122VKP/@@download/ENCFF122VKP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF065JMZ bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF939QHA 6695901 ENCODE Processing Pipeline 7b794fcdb71c2a20db611e8352b3313e https://www.encodeproject.org/files/ENCFF065JMZ/@@download/ENCFF065JMZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF263BSM bigWig fold change over control ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347NTF, ENCFF939QHA 1982775264 ENCODE Processing Pipeline 3e83b402c05ad8996717cdfd2c2f8128 https://www.encodeproject.org/files/ENCFF263BSM/@@download/ENCFF263BSM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF963AZP bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF347NTF 6615187 ENCODE Processing Pipeline 4d6e179b4dd76780ee4c1afb3fa75c79 https://www.encodeproject.org/files/ENCFF963AZP/@@download/ENCFF963AZP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF189COY bigBed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF963AZP 11220485 ENCODE Processing Pipeline d3129b7d85e09f267cec34746b93bf87 https://www.encodeproject.org/files/ENCFF189COY/@@download/ENCFF189COY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF015MIQ bigBed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF065JMZ 11209792 ENCODE Processing Pipeline a87a3d4efa01aed6e063eb66be8fa9e6 https://www.encodeproject.org/files/ENCFF015MIQ/@@download/ENCFF015MIQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF537NIU bigBed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF413MQC 13142259 ENCODE Processing Pipeline 0cc8d7c56a5db94488f56348873d6fe2 https://www.encodeproject.org/files/ENCFF537NIU/@@download/ENCFF537NIU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF626KYI bigBed narrowPeak conservative idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF157QSU 206654 ENCODE Processing Pipeline 73d6f969cc1ea1c0565c33845d0d6332 https://www.encodeproject.org/files/ENCFF626KYI/@@download/ENCFF626KYI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF413MQC bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347NTF, ENCFF939QHA 7119833 ENCODE Processing Pipeline 33254b232cabc70fbb65b172c9453749 https://www.encodeproject.org/files/ENCFF413MQC/@@download/ENCFF413MQC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF157QSU bed narrowPeak conservative idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF065JMZ, ENCFF413MQC, ENCFF419RSJ, ENCFF963AZP 77344 ENCODE Processing Pipeline f9ebb6e5efcf2ca5c0a29c2477a37620 https://www.encodeproject.org/files/ENCFF157QSU/@@download/ENCFF157QSU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF863YLX bed narrowPeak optimal idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF065JMZ, ENCFF413MQC, ENCFF419RSJ, ENCFF963AZP 104941 ENCODE Processing Pipeline 32e454e9a12462a52d03d92e1540757b https://www.encodeproject.org/files/ENCFF863YLX/@@download/ENCFF863YLX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF027LGX bigBed narrowPeak optimal idr thresholded peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF863YLX 250576 ENCODE Processing Pipeline 662f6512e9ba486fdf6b0ab6193a2191 https://www.encodeproject.org/files/ENCFF027LGX/@@download/ENCFF027LGX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF551AQH fastq reads ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF363NAP 2695786141 Michael Snyder, Stanford 046bd7e2356ff09058b28dc145bb64a5 SRA:SRR6214227 https://www.encodeproject.org/files/ENCFF551AQH/@@download/ENCFF551AQH.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF363NAP fastq reads ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF551AQH 3342440202 Michael Snyder, Stanford c59a4793f4da93e1064c315b3c5e3801 SRA:SRR6214227 https://www.encodeproject.org/files/ENCFF363NAP/@@download/ENCFF363NAP.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF750PYC fastq reads ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF443JDD 2851542169 Michael Snyder, Stanford 12c3465dc1c50b4d201b02f3ab04e855 SRA:SRR6214226 https://www.encodeproject.org/files/ENCFF750PYC/@@download/ENCFF750PYC.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF443JDD fastq reads ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF750PYC 3518837055 Michael Snyder, Stanford 8ffbd9ef68571014f873551d80ad1f87 SRA:SRR6214226 https://www.encodeproject.org/files/ENCFF443JDD/@@download/ENCFF443JDD.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF349STY bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF363NAP, ENCFF551AQH, ENCFF643CGH 4931662282 ENCODE Processing Pipeline 3e7191509194cda3b56613446d4c74c0 https://www.encodeproject.org/files/ENCFF349STY/@@download/ENCFF349STY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF619EQB bam unfiltered alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF443JDD, ENCFF643CGH, ENCFF750PYC 6375560438 ENCODE Processing Pipeline 6edc9bce568ed0a9d8fbf8302add553b https://www.encodeproject.org/files/ENCFF619EQB/@@download/ENCFF619EQB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF399KTL bam unfiltered alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF363NAP, ENCFF551AQH, ENCFF643CGH 6089684296 ENCODE Processing Pipeline fe55cbb459d8daa13adc26e24f39d0e9 https://www.encodeproject.org/files/ENCFF399KTL/@@download/ENCFF399KTL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF161MAQ bam unfiltered alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF363NAP, ENCFF551AQH, ENCFF807MUK 6077557177 ENCODE Processing Pipeline 31bd88e14755cae48312126ec9e2b94a https://www.encodeproject.org/files/ENCFF161MAQ/@@download/ENCFF161MAQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF854UAS bam unfiltered alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF443JDD, ENCFF750PYC, ENCFF807MUK 6362738634 ENCODE Processing Pipeline d361671144ec8ffddb985a09b4d3b8bd https://www.encodeproject.org/files/ENCFF854UAS/@@download/ENCFF854UAS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF413SDX bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF443JDD, ENCFF750PYC, ENCFF807MUK 5089887161 ENCODE Processing Pipeline ee0b56b8da7ded036c7180c84ba8c01c https://www.encodeproject.org/files/ENCFF413SDX/@@download/ENCFF413SDX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF905CTJ bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF363NAP, ENCFF551AQH, ENCFF807MUK 4926782387 ENCODE Processing Pipeline a0a616c88bc5afdafab61ed879a6447c https://www.encodeproject.org/files/ENCFF905CTJ/@@download/ENCFF905CTJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF479RUX bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF443JDD, ENCFF643CGH, ENCFF750PYC 5094797373 ENCODE Processing Pipeline 87c37098872cece82027c2d75c8ae2af https://www.encodeproject.org/files/ENCFF479RUX/@@download/ENCFF479RUX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF673KJI bigWig signal p-value ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF479RUX, ENCFF810LLR 1507988597 ENCODE Processing Pipeline f57d0cf602de5e7f864c7a5ac687a6c5 https://www.encodeproject.org/files/ENCFF673KJI/@@download/ENCFF673KJI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF183OBX bigWig signal p-value ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF413SDX, ENCFF905CTJ 1918027877 ENCODE Processing Pipeline f541a2f6acd88cbb8359f2cd307447a1 https://www.encodeproject.org/files/ENCFF183OBX/@@download/ENCFF183OBX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF392YWC bigWig signal p-value ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF905CTJ 1475665215 ENCODE Processing Pipeline 1a10f2438bf0ec095eb482b81c46afce https://www.encodeproject.org/files/ENCFF392YWC/@@download/ENCFF392YWC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF039RLO bigWig signal p-value ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF349STY, ENCFF810LLR 1513211408 ENCODE Processing Pipeline 4db1a2661412366019566ec1d7549d2e https://www.encodeproject.org/files/ENCFF039RLO/@@download/ENCFF039RLO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF905XXS bigWig signal p-value ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF349STY, ENCFF479RUX, ENCFF810LLR 1914311339 ENCODE Processing Pipeline 2908dce46cb264e093cff19d0bfebee6 https://www.encodeproject.org/files/ENCFF905XXS/@@download/ENCFF905XXS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF177REN bigWig signal p-value ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF413SDX 1709649345 ENCODE Processing Pipeline 851f1b9eb177c74e3a64c2c221146b47 https://www.encodeproject.org/files/ENCFF177REN/@@download/ENCFF177REN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF260XZL bigWig fold change over control ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF349STY, ENCFF810LLR 1693561601 ENCODE Processing Pipeline 7a41b90bb703b77550e7df691818f69a https://www.encodeproject.org/files/ENCFF260XZL/@@download/ENCFF260XZL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF981NPE bigWig fold change over control ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF413SDX 1733198116 ENCODE Processing Pipeline e99e86f001023e81326f3cc946377741 https://www.encodeproject.org/files/ENCFF981NPE/@@download/ENCFF981NPE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF700SDV bigWig fold change over control ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF349STY, ENCFF479RUX, ENCFF810LLR 2296358544 ENCODE Processing Pipeline fcfb716866c77cd201034febf13b15a6 https://www.encodeproject.org/files/ENCFF700SDV/@@download/ENCFF700SDV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF376HFL bigWig fold change over control ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF479RUX, ENCFF810LLR 1728818392 ENCODE Processing Pipeline b50ea4f9ba8d33bd8f9f0f5ed9ba08cb https://www.encodeproject.org/files/ENCFF376HFL/@@download/ENCFF376HFL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF613UJG bigWig fold change over control ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF905CTJ 1692460673 ENCODE Processing Pipeline 99ec1ed1bccfbdce292367fbfeb5472c https://www.encodeproject.org/files/ENCFF613UJG/@@download/ENCFF613UJG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF100ZVC bigWig fold change over control ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF413SDX, ENCFF905CTJ 2296228995 ENCODE Processing Pipeline 91c28bd88de52f3a87d37f2c343d4ec3 https://www.encodeproject.org/files/ENCFF100ZVC/@@download/ENCFF100ZVC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF745LIP bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF349STY, ENCFF810LLR 6710172 ENCODE Processing Pipeline 30c02792496905d2e4670d0bddd27fb8 https://www.encodeproject.org/files/ENCFF745LIP/@@download/ENCFF745LIP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF671JOB bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF905CTJ 6705629 ENCODE Processing Pipeline 3c7008d194e3637c33653463bf1dba54 https://www.encodeproject.org/files/ENCFF671JOB/@@download/ENCFF671JOB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF480ZWT bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF349STY, ENCFF479RUX, ENCFF810LLR 7312565 ENCODE Processing Pipeline 5dbec5789a03588cdebf6c982646a5f0 https://www.encodeproject.org/files/ENCFF480ZWT/@@download/ENCFF480ZWT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF852YNM bed narrowPeak conservative idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF480ZWT, ENCFF745LIP, ENCFF913CBA 26693 ENCODE Processing Pipeline a5a799f8ec9c9008b8d7cbbdb0e43586 https://www.encodeproject.org/files/ENCFF852YNM/@@download/ENCFF852YNM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF258PUP bed narrowPeak optimal idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF480ZWT, ENCFF745LIP, ENCFF913CBA 40882 ENCODE Processing Pipeline be654bb592706cc8081440291484f18c https://www.encodeproject.org/files/ENCFF258PUP/@@download/ENCFF258PUP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF655UHR bigBed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF461NGI 11096617 ENCODE Processing Pipeline af87544fbf88c5eb544ee3539b3f3a9d https://www.encodeproject.org/files/ENCFF655UHR/@@download/ENCFF655UHR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF593YEB bed narrowPeak conservative idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF138COW, ENCFF461NGI, ENCFF671JOB 25226 ENCODE Processing Pipeline cc3a22301910015f15d9e254a77489a1 https://www.encodeproject.org/files/ENCFF593YEB/@@download/ENCFF593YEB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF173WPK bed narrowPeak optimal idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF138COW, ENCFF461NGI, ENCFF671JOB 39220 ENCODE Processing Pipeline 7eb87475f2a2d6d8d088532e968a768c https://www.encodeproject.org/files/ENCFF173WPK/@@download/ENCFF173WPK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF231IQD bigBed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF745LIP 11021786 ENCODE Processing Pipeline 941ada07503943e7a646b29b8d0c6681 https://www.encodeproject.org/files/ENCFF231IQD/@@download/ENCFF231IQD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF652CYX bigBed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF671JOB 11005727 ENCODE Processing Pipeline 312c943407d2117924c38597864d1a77 https://www.encodeproject.org/files/ENCFF652CYX/@@download/ENCFF652CYX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF118WZT bigBed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF913CBA 11005049 ENCODE Processing Pipeline c652cbc9bc4d1f94f6efb2bb25ba93bf https://www.encodeproject.org/files/ENCFF118WZT/@@download/ENCFF118WZT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF138COW bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF413SDX 6773581 ENCODE Processing Pipeline 192664da8a289eb8bc18dbc65f955433 https://www.encodeproject.org/files/ENCFF138COW/@@download/ENCFF138COW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF809JKX bigBed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF138COW 10989727 ENCODE Processing Pipeline 77a3a4db5235a6af2a6569abc20097b8 https://www.encodeproject.org/files/ENCFF809JKX/@@download/ENCFF809JKX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF807JVY bigBed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF480ZWT 11116584 ENCODE Processing Pipeline 0d2600e3d7f5e5d21b8315ce3a52f666 https://www.encodeproject.org/files/ENCFF807JVY/@@download/ENCFF807JVY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF437KFS bigBed narrowPeak conservative idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF852YNM 95874 ENCODE Processing Pipeline b74dd750774c3e45bc219a9963090f1f https://www.encodeproject.org/files/ENCFF437KFS/@@download/ENCFF437KFS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF649ISI bigBed narrowPeak conservative idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF593YEB 91560 ENCODE Processing Pipeline 7216a1d30f1f9270876575815bc4d4d9 https://www.encodeproject.org/files/ENCFF649ISI/@@download/ENCFF649ISI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF913CBA bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF479RUX, ENCFF810LLR 6781001 ENCODE Processing Pipeline fdf9a1ef7813e59c721b9fdbd03a712a https://www.encodeproject.org/files/ENCFF913CBA/@@download/ENCFF913CBA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF461NGI bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF413SDX, ENCFF905CTJ 7304440 ENCODE Processing Pipeline ab7f870aa66a514c646a9061d939af24 https://www.encodeproject.org/files/ENCFF461NGI/@@download/ENCFF461NGI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF092MPW bigBed narrowPeak optimal idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF258PUP 136764 ENCODE Processing Pipeline 12f4fe52e1fb4ece90670c31b60bf50a https://www.encodeproject.org/files/ENCFF092MPW/@@download/ENCFF092MPW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF004UQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF173WPK 111934 ENCODE Processing Pipeline d3bf60d3d510e1158288cb4353e7c1ec https://www.encodeproject.org/files/ENCFF004UQJ/@@download/ENCFF004UQJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF204KLS fastq reads ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF952MEL 3532513920 Michael Snyder, Stanford 999a354663efa48235dc69d794cb1537 SRA:SRR6213852 https://www.encodeproject.org/files/ENCFF204KLS/@@download/ENCFF204KLS.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF126ZYT fastq reads ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF726VMX 2765573461 Michael Snyder, Stanford 56852c22425dd6ef687d6af1b70e2b29 SRA:SRR6213853 https://www.encodeproject.org/files/ENCFF126ZYT/@@download/ENCFF126ZYT.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF952MEL fastq reads ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF204KLS 4334821135 Michael Snyder, Stanford 5d6dae5edede8f77e8c27b07b416864e SRA:SRR6213852 https://www.encodeproject.org/files/ENCFF952MEL/@@download/ENCFF952MEL.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF726VMX fastq reads ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF126ZYT 3408950317 Michael Snyder, Stanford 87fde3214fc3b7a4fd3adea75bd8ce2d SRA:SRR6213853 https://www.encodeproject.org/files/ENCFF726VMX/@@download/ENCFF726VMX.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF046TFH bam unfiltered alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF126ZYT, ENCFF643CGH, ENCFF726VMX 6212429135 ENCODE Processing Pipeline 14cbb74174002f72d695480a0a19d883 https://www.encodeproject.org/files/ENCFF046TFH/@@download/ENCFF046TFH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF984HML bam unfiltered alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF204KLS, ENCFF807MUK, ENCFF952MEL 7663674629 ENCODE Processing Pipeline 3bb3836d9ca728a275cf4f26e017e5e7 https://www.encodeproject.org/files/ENCFF984HML/@@download/ENCFF984HML.bam hg19 released missing genetic modification characterization missing control alignments ENCFF587IJK bam unfiltered alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF126ZYT, ENCFF726VMX, ENCFF807MUK 6199720013 ENCODE Processing Pipeline 2851a1f98d217acf783acc308fb8d5b9 https://www.encodeproject.org/files/ENCFF587IJK/@@download/ENCFF587IJK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF052ISO bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF126ZYT, ENCFF643CGH, ENCFF726VMX 5106156887 ENCODE Processing Pipeline caa9e04dbd845c3ba8d531dc1951e99b https://www.encodeproject.org/files/ENCFF052ISO/@@download/ENCFF052ISO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF456GXY bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF126ZYT, ENCFF726VMX, ENCFF807MUK 5102688902 ENCODE Processing Pipeline bab004b7fc490c3658d3a7a2ddfe66e9 https://www.encodeproject.org/files/ENCFF456GXY/@@download/ENCFF456GXY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF388RYY bam unfiltered alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF204KLS, ENCFF643CGH, ENCFF952MEL 7678621275 ENCODE Processing Pipeline 8890ae710b977fd6bdd04f17e7e38c61 https://www.encodeproject.org/files/ENCFF388RYY/@@download/ENCFF388RYY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF464PRX bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF204KLS, ENCFF643CGH, ENCFF952MEL 6221838621 ENCODE Processing Pipeline 8215fbc0bf9db7c07d6f808a740d5ef7 https://www.encodeproject.org/files/ENCFF464PRX/@@download/ENCFF464PRX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF098YMN bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF204KLS, ENCFF807MUK, ENCFF952MEL 6216922209 ENCODE Processing Pipeline ba6cf82a1ca1618b30987302c58f190b https://www.encodeproject.org/files/ENCFF098YMN/@@download/ENCFF098YMN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF850ZNO bigWig signal p-value ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF098YMN, ENCFF182WHU 1796162435 ENCODE Processing Pipeline d8a12d5414f79caa40df2feea1ed7785 https://www.encodeproject.org/files/ENCFF850ZNO/@@download/ENCFF850ZNO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF132ADI bigWig signal p-value ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF052ISO, ENCFF464PRX, ENCFF810LLR 1962478367 ENCODE Processing Pipeline 34928657022d7d0c034a3b50c0d620e8 https://www.encodeproject.org/files/ENCFF132ADI/@@download/ENCFF132ADI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF186CVX bigWig signal p-value ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF464PRX, ENCFF810LLR 1799286313 ENCODE Processing Pipeline ded524a6006f5efdacf52831a9312e53 https://www.encodeproject.org/files/ENCFF186CVX/@@download/ENCFF186CVX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF184ABB bigWig signal p-value ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF052ISO, ENCFF810LLR 1685735044 ENCODE Processing Pipeline 23ea9046f4462c98d18a8619b0d0adf2 https://www.encodeproject.org/files/ENCFF184ABB/@@download/ENCFF184ABB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF816SUD bigWig signal p-value ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF456GXY 1545536855 ENCODE Processing Pipeline f55695a6d2044649bce6ef2b0ef09efe https://www.encodeproject.org/files/ENCFF816SUD/@@download/ENCFF816SUD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF623LBT bigWig signal p-value ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF098YMN, ENCFF182WHU, ENCFF456GXY 1941728199 ENCODE Processing Pipeline 11bc93e579ed8b9d7039051dd061a29f https://www.encodeproject.org/files/ENCFF623LBT/@@download/ENCFF623LBT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF258KCQ bigWig fold change over control ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF464PRX, ENCFF810LLR 1940914958 ENCODE Processing Pipeline 457b2411938dc211203d4928f500819d https://www.encodeproject.org/files/ENCFF258KCQ/@@download/ENCFF258KCQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF444CNE bigWig fold change over control ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF052ISO, ENCFF464PRX, ENCFF810LLR 2522949861 ENCODE Processing Pipeline 8e9e94245aae0f3b4599ac55e7e59d49 https://www.encodeproject.org/files/ENCFF444CNE/@@download/ENCFF444CNE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF407NLG bigWig fold change over control ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF052ISO, ENCFF810LLR 1780592338 ENCODE Processing Pipeline d462d1b9991e4919e52bcffc8753c47c https://www.encodeproject.org/files/ENCFF407NLG/@@download/ENCFF407NLG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF977NZB bigWig fold change over control ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF098YMN, ENCFF182WHU, ENCFF456GXY 2497383321 ENCODE Processing Pipeline 0e8e05d2b15aff8e067b8499000f6e81 https://www.encodeproject.org/files/ENCFF977NZB/@@download/ENCFF977NZB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF041GUB bigWig fold change over control ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF456GXY 1768767866 ENCODE Processing Pipeline 9e0da40d1b59627c847ae3ba09a7f0c1 https://www.encodeproject.org/files/ENCFF041GUB/@@download/ENCFF041GUB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF027KBU bigWig fold change over control ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF098YMN, ENCFF182WHU 1938376629 ENCODE Processing Pipeline 9978a164a9bf61d409587c212b7893b3 https://www.encodeproject.org/files/ENCFF027KBU/@@download/ENCFF027KBU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF095ZGW bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF098YMN, ENCFF182WHU 6981425 ENCODE Processing Pipeline 82f131d21e9bc977ab77c59e7bfcfd2f https://www.encodeproject.org/files/ENCFF095ZGW/@@download/ENCFF095ZGW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF031FEK bigBed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF197OHS 11039921 ENCODE Processing Pipeline 8aec0242308edc8549c71d6092965fab https://www.encodeproject.org/files/ENCFF031FEK/@@download/ENCFF031FEK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF197OHS bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF464PRX, ENCFF810LLR 6987014 ENCODE Processing Pipeline 762a52abd6211a032c5664fd4478d694 https://www.encodeproject.org/files/ENCFF197OHS/@@download/ENCFF197OHS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF068PVG bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF052ISO, ENCFF810LLR 6736188 ENCODE Processing Pipeline 009d7341212198fb5218b7802a7dd9ce https://www.encodeproject.org/files/ENCFF068PVG/@@download/ENCFF068PVG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF320HAC bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF052ISO, ENCFF464PRX, ENCFF810LLR 7342032 ENCODE Processing Pipeline 998cb963e9974774ca84fae4b0b7ef14 https://www.encodeproject.org/files/ENCFF320HAC/@@download/ENCFF320HAC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF285HJS bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF456GXY 6744723 ENCODE Processing Pipeline 3a80f5f382a1219ea5c1adb3e70667f4 https://www.encodeproject.org/files/ENCFF285HJS/@@download/ENCFF285HJS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF552RRZ bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF098YMN, ENCFF182WHU, ENCFF456GXY 7338444 ENCODE Processing Pipeline 66a03191015e3d5080f92760e99713dc https://www.encodeproject.org/files/ENCFF552RRZ/@@download/ENCFF552RRZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF613FXC bigBed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF320HAC 11188613 ENCODE Processing Pipeline 4a17b989a8cb1877d88b4b214987bafc https://www.encodeproject.org/files/ENCFF613FXC/@@download/ENCFF613FXC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF264TGO bigBed narrowPeak conservative idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF269SFG 111150 ENCODE Processing Pipeline 29a2e060995e9cebafe20cf3ba8dba80 https://www.encodeproject.org/files/ENCFF264TGO/@@download/ENCFF264TGO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF256YHR bigBed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF068PVG 11010999 ENCODE Processing Pipeline 5d33a8ee22e089b2d1dba6bafa0e921b https://www.encodeproject.org/files/ENCFF256YHR/@@download/ENCFF256YHR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF362GMJ bigBed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF285HJS 11015871 ENCODE Processing Pipeline 0d00c319f05975d1366456f1bfbee663 https://www.encodeproject.org/files/ENCFF362GMJ/@@download/ENCFF362GMJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF444YLR bed narrowPeak conservative idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF068PVG, ENCFF197OHS, ENCFF320HAC, ENCFF419RSJ 30139 ENCODE Processing Pipeline 243d8adc1966a732523cc3a465da8488 https://www.encodeproject.org/files/ENCFF444YLR/@@download/ENCFF444YLR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF604AVO bed narrowPeak optimal idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF068PVG, ENCFF197OHS, ENCFF320HAC, ENCFF419RSJ 46222 ENCODE Processing Pipeline 14cb94ec24040972e60d065ec1567dd3 https://www.encodeproject.org/files/ENCFF604AVO/@@download/ENCFF604AVO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF641HNH bed narrowPeak optimal idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF095ZGW, ENCFF285HJS, ENCFF552RRZ 45163 ENCODE Processing Pipeline 568cee132d134200697734e414e85ccf https://www.encodeproject.org/files/ENCFF641HNH/@@download/ENCFF641HNH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF583DRE bigBed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF095ZGW 11022520 ENCODE Processing Pipeline 655907407227095d4fa898586a1c3ef9 https://www.encodeproject.org/files/ENCFF583DRE/@@download/ENCFF583DRE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF344ISC bigBed narrowPeak optimal idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF641HNH 141528 ENCODE Processing Pipeline c5d2a1c1ddb87b089584194cac6e7575 https://www.encodeproject.org/files/ENCFF344ISC/@@download/ENCFF344ISC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF206CZC bigBed narrowPeak optimal idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF604AVO 145173 ENCODE Processing Pipeline 549c5fe24499f51451b68ab714202824 https://www.encodeproject.org/files/ENCFF206CZC/@@download/ENCFF206CZC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF269SFG bed narrowPeak conservative idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF095ZGW, ENCFF285HJS, ENCFF552RRZ 27910 ENCODE Processing Pipeline e8968b5afa1348bffb83c607171153a6 https://www.encodeproject.org/files/ENCFF269SFG/@@download/ENCFF269SFG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF338VKM bigBed narrowPeak conservative idr thresholded peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF444YLR 116995 ENCODE Processing Pipeline 1871706fa5c72dfd76b1466f501fa8f9 https://www.encodeproject.org/files/ENCFF338VKM/@@download/ENCFF338VKM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF076GWW bigBed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF552RRZ 11186133 ENCODE Processing Pipeline 10f1ce82773350d1060b5d683e735f07 https://www.encodeproject.org/files/ENCFF076GWW/@@download/ENCFF076GWW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF217XXN fastq reads ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF090IMJ 3426840998 Michael Snyder, Stanford 7b224d0745be436def35c8820bc84719 SRA:SRR6213635 https://www.encodeproject.org/files/ENCFF217XXN/@@download/ENCFF217XXN.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF183GXL fastq reads ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF428FMZ 2714484773 Michael Snyder, Stanford 1dbb20418ce47438c2224551bfd60a4d SRA:SRR6213634 https://www.encodeproject.org/files/ENCFF183GXL/@@download/ENCFF183GXL.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF090IMJ fastq reads ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF217XXN 4179367999 Michael Snyder, Stanford 114a9aad46af641f31608ea1fa91373f SRA:SRR6213635 https://www.encodeproject.org/files/ENCFF090IMJ/@@download/ENCFF090IMJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF428FMZ fastq reads ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF183GXL 3375814634 Michael Snyder, Stanford 73f1d938bc6595220ef434fafc21d18b SRA:SRR6213634 https://www.encodeproject.org/files/ENCFF428FMZ/@@download/ENCFF428FMZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF615YPB bam unfiltered alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF183GXL, ENCFF428FMZ, ENCFF807MUK 6121958737 ENCODE Processing Pipeline b94851d84ac6d9e855dff8bfdd9ab46b https://www.encodeproject.org/files/ENCFF615YPB/@@download/ENCFF615YPB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF984BVF bam unfiltered alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF183GXL, ENCFF428FMZ, ENCFF643CGH 6132031473 ENCODE Processing Pipeline 52c5bff92045cad3f0012c30faec3a48 https://www.encodeproject.org/files/ENCFF984BVF/@@download/ENCFF984BVF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF643ARH bam unfiltered alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF090IMJ, ENCFF217XXN, ENCFF643CGH 7388208514 ENCODE Processing Pipeline 742d048a45070cf732bc188e9191c4af https://www.encodeproject.org/files/ENCFF643ARH/@@download/ENCFF643ARH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF717UGN bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF183GXL, ENCFF428FMZ, ENCFF807MUK 4943003568 ENCODE Processing Pipeline 10a19691270d467c08552dc1ba2bf64e https://www.encodeproject.org/files/ENCFF717UGN/@@download/ENCFF717UGN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF592PEU bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF183GXL, ENCFF428FMZ, ENCFF643CGH 4947425448 ENCODE Processing Pipeline 0dee04e561dbc8032f3d64fcbcdda448 https://www.encodeproject.org/files/ENCFF592PEU/@@download/ENCFF592PEU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF262JAD bam unfiltered alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF090IMJ, ENCFF217XXN, ENCFF807MUK 7376604889 ENCODE Processing Pipeline 8a4e6d675854b85e7745cd8d594bd143 https://www.encodeproject.org/files/ENCFF262JAD/@@download/ENCFF262JAD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF773VPD bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF090IMJ, ENCFF217XXN, ENCFF643CGH 6091195589 ENCODE Processing Pipeline 9925604f583dc2846f2031161e9842e3 https://www.encodeproject.org/files/ENCFF773VPD/@@download/ENCFF773VPD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF529LRA bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF090IMJ, ENCFF217XXN, ENCFF807MUK 6085560421 ENCODE Processing Pipeline c2a51bc8a01f2dabbebc3ccde0b8d6b2 https://www.encodeproject.org/files/ENCFF529LRA/@@download/ENCFF529LRA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF290JVP bigWig signal p-value ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF529LRA 1559873963 ENCODE Processing Pipeline 9d7fda276d824cfdbce1880316b9206c https://www.encodeproject.org/files/ENCFF290JVP/@@download/ENCFF290JVP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF700PYO bigWig signal p-value ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF717UGN 1575371987 ENCODE Processing Pipeline f8fbe00bf06ec2d7008e1f2b9969fe40 https://www.encodeproject.org/files/ENCFF700PYO/@@download/ENCFF700PYO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF396DDY bigWig signal p-value ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF529LRA, ENCFF717UGN 1934060528 ENCODE Processing Pipeline d9cc26dd96a15b3f1d32f55955b20a86 https://www.encodeproject.org/files/ENCFF396DDY/@@download/ENCFF396DDY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF139THL bigWig signal p-value ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF592PEU, ENCFF773VPD, ENCFF810LLR 1936512385 ENCODE Processing Pipeline 646abe6f6c807b7ef93b2d4fb0f3b203 https://www.encodeproject.org/files/ENCFF139THL/@@download/ENCFF139THL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF060IZV bigWig signal p-value ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF773VPD, ENCFF810LLR 1882705273 ENCODE Processing Pipeline 6a5a658ce0d8ed5e313a9c6c3ee94cd5 https://www.encodeproject.org/files/ENCFF060IZV/@@download/ENCFF060IZV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF627JEM bigWig signal p-value ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF592PEU, ENCFF810LLR 1493836578 ENCODE Processing Pipeline d6b7e996034f26869dbad405a4a117e1 https://www.encodeproject.org/files/ENCFF627JEM/@@download/ENCFF627JEM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF043HRW bigWig fold change over control ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF592PEU, ENCFF810LLR 1692442635 ENCODE Processing Pipeline e283dbe4c592e19f9f56f9df88a64039 https://www.encodeproject.org/files/ENCFF043HRW/@@download/ENCFF043HRW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF677OXC bigWig fold change over control ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF529LRA, ENCFF717UGN 2444383314 ENCODE Processing Pipeline 013869e05d0e1c741682a04cfc024983 https://www.encodeproject.org/files/ENCFF677OXC/@@download/ENCFF677OXC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF583WOQ bigWig fold change over control ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF773VPD, ENCFF810LLR 1903736419 ENCODE Processing Pipeline 2a0cb1c7122d86f7e7db500952470c1f https://www.encodeproject.org/files/ENCFF583WOQ/@@download/ENCFF583WOQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF342HXB bigWig fold change over control ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF717UGN 1699120434 ENCODE Processing Pipeline dfd4dd783c102e8e51ea7ca8da3b9394 https://www.encodeproject.org/files/ENCFF342HXB/@@download/ENCFF342HXB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF774TEE bigWig fold change over control ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF592PEU, ENCFF773VPD, ENCFF810LLR 2449967607 ENCODE Processing Pipeline 094afc92f7a6a265b6cc92454d7209ea https://www.encodeproject.org/files/ENCFF774TEE/@@download/ENCFF774TEE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF209WDY bigWig fold change over control ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF529LRA 1902868285 ENCODE Processing Pipeline d2af874ac6542c245d7b9f8acaddfcfa https://www.encodeproject.org/files/ENCFF209WDY/@@download/ENCFF209WDY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF044HQS bigBed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF054JCE 13285499 ENCODE Processing Pipeline 475b6a8e465e616a757130a151045310 https://www.encodeproject.org/files/ENCFF044HQS/@@download/ENCFF044HQS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF054JCE bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF592PEU, ENCFF810LLR 7094299 ENCODE Processing Pipeline 494dbdbfbfda725b5082c994628a68d9 https://www.encodeproject.org/files/ENCFF054JCE/@@download/ENCFF054JCE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF243URD bigBed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF414UZY 13285633 ENCODE Processing Pipeline 15cc655a7f23400698ab1b6d1d618998 https://www.encodeproject.org/files/ENCFF243URD/@@download/ENCFF243URD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF546BAG bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF773VPD, ENCFF810LLR 7181472 ENCODE Processing Pipeline 399804c9a20fbf0d5838c0dac7d59bde https://www.encodeproject.org/files/ENCFF546BAG/@@download/ENCFF546BAG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF414UZY bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF592PEU, ENCFF773VPD, ENCFF810LLR 7307279 ENCODE Processing Pipeline b235503aaaba34d9ce5af992c9a8e1eb https://www.encodeproject.org/files/ENCFF414UZY/@@download/ENCFF414UZY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF333NJL bigBed narrowPeak conservative idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF108TYZ 1012505 ENCODE Processing Pipeline 10f871a5288f559a92b2c7b825aa8f46 https://www.encodeproject.org/files/ENCFF333NJL/@@download/ENCFF333NJL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF077LPM bigBed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF546BAG 13317774 ENCODE Processing Pipeline 1e4ade43a3112a1ac6b425bcc7b28f39 https://www.encodeproject.org/files/ENCFF077LPM/@@download/ENCFF077LPM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF268AOU bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF717UGN 7087872 ENCODE Processing Pipeline 85b05f20715e6a1f8e40e3cded3b2154 https://www.encodeproject.org/files/ENCFF268AOU/@@download/ENCFF268AOU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF021ZLO bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF182WHU, ENCFF529LRA, ENCFF717UGN 7302501 ENCODE Processing Pipeline aae5010f5df30bd66b7dcb88675811b6 https://www.encodeproject.org/files/ENCFF021ZLO/@@download/ENCFF021ZLO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF321GPP bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF529LRA 7174543 ENCODE Processing Pipeline 24860e71d825e8d6c6dd7ae46bb132d8 https://www.encodeproject.org/files/ENCFF321GPP/@@download/ENCFF321GPP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF108TYZ bed narrowPeak conservative idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF054JCE, ENCFF414UZY, ENCFF419RSJ, ENCFF546BAG 499538 ENCODE Processing Pipeline 0744ad6c1b40d43e05e071204810050d https://www.encodeproject.org/files/ENCFF108TYZ/@@download/ENCFF108TYZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF772OQU bed narrowPeak optimal idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF054JCE, ENCFF414UZY, ENCFF419RSJ, ENCFF546BAG 534386 ENCODE Processing Pipeline 7dfdbefb3c3af62e6495bc2f8bd35d29 https://www.encodeproject.org/files/ENCFF772OQU/@@download/ENCFF772OQU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF046WEY bigBed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF021ZLO 13270456 ENCODE Processing Pipeline 883f8cca869c6f441c90ba52b757eef1 https://www.encodeproject.org/files/ENCFF046WEY/@@download/ENCFF046WEY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF530ZOY bigBed narrowPeak optimal idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF612GGC 1057722 ENCODE Processing Pipeline cfd39762af4dcddb715eb5acd4c55eae https://www.encodeproject.org/files/ENCFF530ZOY/@@download/ENCFF530ZOY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF320PIY bigBed narrowPeak optimal idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF772OQU 1068954 ENCODE Processing Pipeline b38cb1e2e22ed6e2fc05e6f1df5863f5 https://www.encodeproject.org/files/ENCFF320PIY/@@download/ENCFF320PIY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF035GHC bigBed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF321GPP 13303323 ENCODE Processing Pipeline 437ccff47ef12116fac90c82cc0d197d https://www.encodeproject.org/files/ENCFF035GHC/@@download/ENCFF035GHC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF936VFW bigBed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF268AOU 13270113 ENCODE Processing Pipeline ec57bcfe1459606daf8d3d915005800e https://www.encodeproject.org/files/ENCFF936VFW/@@download/ENCFF936VFW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF612GGC bed narrowPeak optimal idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF021ZLO, ENCFF268AOU, ENCFF321GPP 528273 ENCODE Processing Pipeline 378bd778bb7a3d6f6005772d59536ab0 https://www.encodeproject.org/files/ENCFF612GGC/@@download/ENCFF612GGC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF028TSA bigBed narrowPeak conservative idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF955WZS 1008233 ENCODE Processing Pipeline de3ebd4a34a8a40309a18debd77b8c06 https://www.encodeproject.org/files/ENCFF028TSA/@@download/ENCFF028TSA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF955WZS bed narrowPeak conservative idr thresholded peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF021ZLO, ENCFF268AOU, ENCFF321GPP 498633 ENCODE Processing Pipeline 0f5a1edd67add390b3001f33359db2b2 https://www.encodeproject.org/files/ENCFF955WZS/@@download/ENCFF955WZS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF203DJH fastq reads ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 2002064032 Bradley Bernstein, Broad 2758a23722f74212af20e3de0b5255e7 SRA:SRR5832981 https://www.encodeproject.org/files/ENCFF203DJH/@@download/ENCFF203DJH.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF374ENZ fastq reads ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 3243717284 Bradley Bernstein, Broad a570a972b311c9f7f865bef7e6002c55 SRA:SRR5832980 https://www.encodeproject.org/files/ENCFF374ENZ/@@download/ENCFF374ENZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF894WEU bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF807MUK 1974337654 ENCODE Processing Pipeline fc8890c92b8899a8327addfcc20cdfc0 https://www.encodeproject.org/files/ENCFF894WEU/@@download/ENCFF894WEU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF337JUL bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF643CGH 3606080051 ENCODE Processing Pipeline 96cd05b2a7201d5212a0abe7784d7414 https://www.encodeproject.org/files/ENCFF337JUL/@@download/ENCFF337JUL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF550ZBF bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF807MUK 2378237551 ENCODE Processing Pipeline 515dd0dac15ce105aeaa69ffccf260b6 https://www.encodeproject.org/files/ENCFF550ZBF/@@download/ENCFF550ZBF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF720WGU bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF807MUK 2662308777 ENCODE Processing Pipeline f5f5d6c3c6db3d21862fc8b9e7a0ab74 https://www.encodeproject.org/files/ENCFF720WGU/@@download/ENCFF720WGU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF136DQN bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF807MUK 3606210921 ENCODE Processing Pipeline f4865b69508e92e676c1bf97716cb0fe https://www.encodeproject.org/files/ENCFF136DQN/@@download/ENCFF136DQN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF944SDM bam unfiltered alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF643CGH 2381131666 ENCODE Processing Pipeline b8b293d21f701233e225480dfdf8f505 https://www.encodeproject.org/files/ENCFF944SDM/@@download/ENCFF944SDM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF416WNF bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF643CGH 1981001828 ENCODE Processing Pipeline 65432742cbc2b35de31a9289e0e75062 https://www.encodeproject.org/files/ENCFF416WNF/@@download/ENCFF416WNF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF449TTJ bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF643CGH 2671189210 ENCODE Processing Pipeline e07afc81f1988db461a5636b888dcad5 https://www.encodeproject.org/files/ENCFF449TTJ/@@download/ENCFF449TTJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF727SUO bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF, ENCFF449TTJ 1592564500 ENCODE Processing Pipeline deb13387eb78c2444abe887b178d3470 https://www.encodeproject.org/files/ENCFF727SUO/@@download/ENCFF727SUO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF539IXT bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 1153720193 ENCODE Processing Pipeline 07eefef72a74f629769690538a1b237c https://www.encodeproject.org/files/ENCFF539IXT/@@download/ENCFF539IXT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF951BIH bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF 1206144248 ENCODE Processing Pipeline 25c69cc031a120ee38ee0de0aef5188d https://www.encodeproject.org/files/ENCFF951BIH/@@download/ENCFF951BIH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF746SXE bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 1415283948 ENCODE Processing Pipeline ec6bb463c052cd6a6641ac1207eefac0 https://www.encodeproject.org/files/ENCFF746SXE/@@download/ENCFF746SXE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF026DSU bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF449TTJ 1093741012 ENCODE Processing Pipeline 756009be34420139c3b1c12ed251ba5d https://www.encodeproject.org/files/ENCFF026DSU/@@download/ENCFF026DSU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF569EHW bigWig signal p-value ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU, ENCFF894WEU 1527238562 ENCODE Processing Pipeline 2cf701235d4efd093a7e46cadbec03b0 https://www.encodeproject.org/files/ENCFF569EHW/@@download/ENCFF569EHW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF460YAE bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 1208734326 ENCODE Processing Pipeline 07852f03ed04e98576b90039b0f8ab94 https://www.encodeproject.org/files/ENCFF460YAE/@@download/ENCFF460YAE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF303QXI bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 1415287700 ENCODE Processing Pipeline 7ba8c1eb66ad087209c5dc35f75a3134 https://www.encodeproject.org/files/ENCFF303QXI/@@download/ENCFF303QXI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF764RUG bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF544DYV 13250937 ENCODE Processing Pipeline db6f9f4fbfcfff6ef8e3fda73a7b29d9 https://www.encodeproject.org/files/ENCFF764RUG/@@download/ENCFF764RUG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF544DYV bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU, ENCFF894WEU 7217414 ENCODE Processing Pipeline 95b0d28a1d2e4a64e005f3480063cc5d https://www.encodeproject.org/files/ENCFF544DYV/@@download/ENCFF544DYV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF030RTP bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF, ENCFF449TTJ 1808722441 ENCODE Processing Pipeline 6fd69f1a43842ecc8e1acc2349a7e374 https://www.encodeproject.org/files/ENCFF030RTP/@@download/ENCFF030RTP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF086KYS bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF449TTJ 1389584812 ENCODE Processing Pipeline d1b40e883233132ccd8af181268bbea4 https://www.encodeproject.org/files/ENCFF086KYS/@@download/ENCFF086KYS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF642RXD bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU, ENCFF894WEU 1845240307 ENCODE Processing Pipeline f1dddae8e5c64273a276f1ad83c02a7f https://www.encodeproject.org/files/ENCFF642RXD/@@download/ENCFF642RXD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF477RJI bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 6787883 ENCODE Processing Pipeline 088e00e370807953cee4a5eb25cc6fa5 https://www.encodeproject.org/files/ENCFF477RJI/@@download/ENCFF477RJI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF499ZPP bed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF477RJI, ENCFF544DYV, ENCFF593OVL 24795 ENCODE Processing Pipeline 93fe1707c7f50858be94b6b89ee09ba4 https://www.encodeproject.org/files/ENCFF499ZPP/@@download/ENCFF499ZPP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF592HLV bigWig fold change over control ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF 1173089645 ENCODE Processing Pipeline ae2111078fdcf08f690018ba5f109bf4 https://www.encodeproject.org/files/ENCFF592HLV/@@download/ENCFF592HLV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593OVL bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 6716953 ENCODE Processing Pipeline 2c89372816966903c15aee2761bd6ebc https://www.encodeproject.org/files/ENCFF593OVL/@@download/ENCFF593OVL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF364CUQ bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF593OVL 13540930 ENCODE Processing Pipeline 4241427aea2935a4ae0c96243e0e5c53 https://www.encodeproject.org/files/ENCFF364CUQ/@@download/ENCFF364CUQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF428HSL bed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF477RJI, ENCFF544DYV, ENCFF593OVL 16357 ENCODE Processing Pipeline 763ac34104a73b06b54df4105e41159f https://www.encodeproject.org/files/ENCFF428HSL/@@download/ENCFF428HSL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF070LAH bigBed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF499ZPP 106356 ENCODE Processing Pipeline a9f9d599bae4f3cece9769b4f446e256 https://www.encodeproject.org/files/ENCFF070LAH/@@download/ENCFF070LAH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF428VSR bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF477RJI 13310474 ENCODE Processing Pipeline 1a12370fba1c6f829735f838314a699c https://www.encodeproject.org/files/ENCFF428VSR/@@download/ENCFF428VSR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF231LKP bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF, ENCFF449TTJ 7193365 ENCODE Processing Pipeline f865fd1ba9b0b2f6ac735161f0b8998a https://www.encodeproject.org/files/ENCFF231LKP/@@download/ENCFF231LKP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF327MQY bigBed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF428HSL 90466 ENCODE Processing Pipeline 277863d8fe40a4c58dc2885ad6bcf26c https://www.encodeproject.org/files/ENCFF327MQY/@@download/ENCFF327MQY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF413CGE bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF142VHH, ENCFF401XXH, ENCFF449TTJ 6712980 ENCODE Processing Pipeline ac9eeb29b3dd7191b0eaa747648ee5b4 https://www.encodeproject.org/files/ENCFF413CGE/@@download/ENCFF413CGE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF309RDZ bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF734MMK 13383917 ENCODE Processing Pipeline 73ece24ab6eb44e12a811e220e6a78b5 https://www.encodeproject.org/files/ENCFF309RDZ/@@download/ENCFF309RDZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF232TGO bigBed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF520IRJ 123022 ENCODE Processing Pipeline 67efd0b76fb5596e2f6f35519465a7ec https://www.encodeproject.org/files/ENCFF232TGO/@@download/ENCFF232TGO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF404HAO bigBed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF249SIN 128370 ENCODE Processing Pipeline a214dc3978448aa532dae807258e61a5 https://www.encodeproject.org/files/ENCFF404HAO/@@download/ENCFF404HAO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF438GOP bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF413CGE 13554172 ENCODE Processing Pipeline b3584dca61a64f463500b907dfe7e97d https://www.encodeproject.org/files/ENCFF438GOP/@@download/ENCFF438GOP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF734MMK bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF416WNF 6737165 ENCODE Processing Pipeline ea220b93af2f138fa5da7a6addb77797 https://www.encodeproject.org/files/ENCFF734MMK/@@download/ENCFF734MMK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF249SIN bed narrowPeak optimal idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231LKP, ENCFF413CGE, ENCFF419RSJ, ENCFF734MMK 28528 ENCODE Processing Pipeline 57955a4ec4c6e38b9678a412f97a454f https://www.encodeproject.org/files/ENCFF249SIN/@@download/ENCFF249SIN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF968JLN bigBed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231LKP 13312590 ENCODE Processing Pipeline c3081bb9c6526dee323f988b5bfb6f89 https://www.encodeproject.org/files/ENCFF968JLN/@@download/ENCFF968JLN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF520IRJ bed narrowPeak conservative idr thresholded peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF231LKP, ENCFF413CGE, ENCFF419RSJ, ENCFF734MMK 19980 ENCODE Processing Pipeline cfbdc53b5f419e6dbfcff53afd3b302d https://www.encodeproject.org/files/ENCFF520IRJ/@@download/ENCFF520IRJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF000XLK bam alignments ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XPK 636876575 Sherman Weissman, Yale f742e1698f224112ff3509a55ac88ad3 https://www.encodeproject.org/files/ENCFF000XLK/@@download/ENCFF000XLK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XLL bam alignments ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XPJ 617143214 Sherman Weissman, Yale 51fdc572d31224c1edba590f0ecae554 https://www.encodeproject.org/files/ENCFF000XLL/@@download/ENCFF000XLL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XLM bigBed narrowPeak peaks ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJI 366910 Sherman Weissman, Yale c03a8c7483086c88f6977da3f60aaad6 https://www.encodeproject.org/files/ENCFF000XLM/@@download/ENCFF000XLM.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XLN bigWig signal ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 330842694 Sherman Weissman, Yale 399b45694baacd28bae4191fe0044929 https://www.encodeproject.org/files/ENCFF000XLN/@@download/ENCFF000XLN.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XPJ fastq reads ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 503026659 Sherman Weissman, Yale 8bf6cf76db56711865cfb7f04341ffd1 https://www.encodeproject.org/files/ENCFF000XPJ/@@download/ENCFF000XPJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XOO/ released biological replicates with identical biosample insufficient read length ENCFF000XPK fastq reads ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 584122866 Sherman Weissman, Yale dbef9e248938b7815da18cc8b490c28c https://www.encodeproject.org/files/ENCFF000XPK/@@download/ENCFF000XPK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XOO/ released biological replicates with identical biosample insufficient read length ENCFF001VJI bed narrowPeak peaks ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 135927 Sherman Weissman, Yale b2692bf57d526e844baa7e0f1fc4cc3b https://www.encodeproject.org/files/ENCFF001VJI/@@download/ENCFF001VJI.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CTG bed narrowPeak optimal idr thresholded peaks ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 345134 ENCODE Consortium Analysis Working Group dc02ec56d2dfe26638e95c008cf01f74 https://www.encodeproject.org/files/ENCFF002CTG/@@download/ENCFF002CTG.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF265EAO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTG 730534 ENCODE Consortium 12576186b043ac939ed7f826afa4a8e7 https://www.encodeproject.org/files/ENCFF265EAO/@@download/ENCFF265EAO.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000PLX bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PMK 659046538 Richard Myers, HAIB 115431a8e8d3c8ca5331f50d53d15d00 https://www.encodeproject.org/files/ENCFF000PLX/@@download/ENCFF000PLX.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PLY bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PMN 759399098 Richard Myers, HAIB 6c0853b4439ce00eb3609cc2040488c1 https://www.encodeproject.org/files/ENCFF000PLY/@@download/ENCFF000PLY.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PLZ bigBed broadPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UGW 125514 Richard Myers, HAIB 9b3ec959228356e208b894a19637ab5f https://www.encodeproject.org/files/ENCFF000PLZ/@@download/ENCFF000PLZ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PMA bigBed broadPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UGX 147835 Richard Myers, HAIB 90ffcf0c1c36cbd2dd916decc90d68e8 https://www.encodeproject.org/files/ENCFF000PMA/@@download/ENCFF000PMA.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PMD bigWig raw signal ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 14949534 Richard Myers, HAIB 8c8ddfee4ea9bef9cfc5ad5676bda82a https://www.encodeproject.org/files/ENCFF000PMD/@@download/ENCFF000PMD.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PME bigWig raw signal ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 28688096 Richard Myers, HAIB 7b4bcd7f044731e5007c8779304f8606 https://www.encodeproject.org/files/ENCFF000PME/@@download/ENCFF000PME.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PMK fastq reads ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1628706677 Richard Myers, HAIB b2afbe4326cd37f58fcd8e078356dd9c https://www.encodeproject.org/files/ENCFF000PMK/@@download/ENCFF000PMK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POO/ released low read length, low read depth biological replicates with identical biosample ENCFF000PMN fastq reads ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1751027755 Richard Myers, HAIB 3d2cd782aab394e1bfba80b45d6bdf1b https://www.encodeproject.org/files/ENCFF000PMN/@@download/ENCFF000PMN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POQ/ released low read length, low read depth biological replicates with identical biosample ENCFF001UGW bed broadPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 55399 Richard Myers, HAIB 30d248b90d361c4f87c3ff72ea79493e https://www.encodeproject.org/files/ENCFF001UGW/@@download/ENCFF001UGW.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UGX bed broadPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 75950 Richard Myers, HAIB e5fe9cefcbe6c83c3c38642e9132b641 https://www.encodeproject.org/files/ENCFF001UGX/@@download/ENCFF001UGX.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CKT bed narrowPeak optimal idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 152976 ENCODE Consortium Analysis Working Group 393b6967f22a5787bb74536e5846ef76 https://www.encodeproject.org/files/ENCFF002CKT/@@download/ENCFF002CKT.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF694DVO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKT 480876 ENCODE Consortium 0a69527b62dcb56dd09990816b7f3ab8 https://www.encodeproject.org/files/ENCFF694DVO/@@download/ENCFF694DVO.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF572UTS bam unfiltered alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PMN, ENCFF643CGH 2018521726 ENCODE Processing Pipeline 4275e483f3fc45d211bfb3f94a12d201 https://www.encodeproject.org/files/ENCFF572UTS/@@download/ENCFF572UTS.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF195HUS bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PMN, ENCFF643CGH 456227150 ENCODE Processing Pipeline a0be0ff88a6151b356d038eb53c00b8e https://www.encodeproject.org/files/ENCFF195HUS/@@download/ENCFF195HUS.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF351TOY bam unfiltered alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMK, ENCFF643CGH 1955208916 ENCODE Processing Pipeline f3dde7ec81f1202b36d871f9ad27142d https://www.encodeproject.org/files/ENCFF351TOY/@@download/ENCFF351TOY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF291BBG bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMK, ENCFF643CGH 506369414 ENCODE Processing Pipeline 76daa1805a91587d9a1b8e6404b60269 https://www.encodeproject.org/files/ENCFF291BBG/@@download/ENCFF291BBG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF132TMM bam unfiltered alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PMN, ENCFF807MUK 2015415804 ENCODE Processing Pipeline 1ccc259d214efdd210d677d7c4f07eec https://www.encodeproject.org/files/ENCFF132TMM/@@download/ENCFF132TMM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF714VYF bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PMN, ENCFF807MUK 456500596 ENCODE Processing Pipeline 0d769120b09893e49ec9ff6efe68c72e https://www.encodeproject.org/files/ENCFF714VYF/@@download/ENCFF714VYF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF246LVD bam unfiltered alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMK, ENCFF807MUK 1951601167 ENCODE Processing Pipeline d882199a507f45a0a012c19c88a55013 https://www.encodeproject.org/files/ENCFF246LVD/@@download/ENCFF246LVD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF967BLL bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMK, ENCFF807MUK 506627868 ENCODE Processing Pipeline 357e6eda9af1bb231e628e41baf26840 https://www.encodeproject.org/files/ENCFF967BLL/@@download/ENCFF967BLL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF838GYF bigWig signal p-value ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV, ENCFF967BLL 521129173 ENCODE Processing Pipeline 0f56af875c1c46a55737cb1dfb3a9e13 https://www.encodeproject.org/files/ENCFF838GYF/@@download/ENCFF838GYF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF906TPA bed narrowPeak conservative idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF413BWR, ENCFF816UIF, ENCFF884SBE 74355 ENCODE Processing Pipeline ec123b6d86c52e45f3b222f45b3e912d https://www.encodeproject.org/files/ENCFF906TPA/@@download/ENCFF906TPA.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF670OCB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF153JLK 209287 ENCODE Processing Pipeline abbc1330279b24daa7ef16e57f32def3 https://www.encodeproject.org/files/ENCFF670OCB/@@download/ENCFF670OCB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF996PZM bigWig signal p-value ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF967BLL 459161375 ENCODE Processing Pipeline 8fe341c62061f023a2c0011b3d62e058 https://www.encodeproject.org/files/ENCFF996PZM/@@download/ENCFF996PZM.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF816UIF bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF967BLL 4640270 ENCODE Processing Pipeline 239a09275391130d6fec1cb7bc0a9e9b https://www.encodeproject.org/files/ENCFF816UIF/@@download/ENCFF816UIF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF884SBE bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV 3331670 ENCODE Processing Pipeline 5397da8ebe0a581e7021de33216a3a87 https://www.encodeproject.org/files/ENCFF884SBE/@@download/ENCFF884SBE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF413BWR bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV, ENCFF967BLL 5137406 ENCODE Processing Pipeline e5ccd307f3f3c778f7ef63716f039b9a https://www.encodeproject.org/files/ENCFF413BWR/@@download/ENCFF413BWR.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF104BAD bigBed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF816UIF 10665233 ENCODE Processing Pipeline ccdddb7430c83ea103698e3883dcb9dc https://www.encodeproject.org/files/ENCFF104BAD/@@download/ENCFF104BAD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF093YFU bigBed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF884SBE 8054523 ENCODE Processing Pipeline 482c5b80e33c87f0be0a08c5a7a0f412 https://www.encodeproject.org/files/ENCFF093YFU/@@download/ENCFF093YFU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF250FPR bigWig signal p-value ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV 429346282 ENCODE Processing Pipeline 16db5629376bc61f7bdeef6d4f2765f2 https://www.encodeproject.org/files/ENCFF250FPR/@@download/ENCFF250FPR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF249UUU bigWig fold change over control ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF967BLL 309270856 ENCODE Processing Pipeline 31923973f168d936f4753750336cecbb https://www.encodeproject.org/files/ENCFF249UUU/@@download/ENCFF249UUU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF153JLK bed narrowPeak optimal idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF413BWR, ENCFF816UIF, ENCFF884SBE 82634 ENCODE Processing Pipeline cc4c628548dadf6eff641ba4393fd6fd https://www.encodeproject.org/files/ENCFF153JLK/@@download/ENCFF153JLK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF227TLB bigWig fold change over control ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV 261677261 ENCODE Processing Pipeline a083962e8d03fbea280cca4213df6827 https://www.encodeproject.org/files/ENCFF227TLB/@@download/ENCFF227TLB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF843JOP bigWig fold change over control ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV, ENCFF967BLL 470132463 ENCODE Processing Pipeline 98317f97836377ff22a6cf9c54c23c54 https://www.encodeproject.org/files/ENCFF843JOP/@@download/ENCFF843JOP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF846LEX bigBed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF413BWR 11098277 ENCODE Processing Pipeline 8bf755f46e177edef2be883ba3ddecd5 https://www.encodeproject.org/files/ENCFF846LEX/@@download/ENCFF846LEX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF466XKF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF906TPA 196876 ENCODE Processing Pipeline 5b576b91dc7e6db317606db92975a94f https://www.encodeproject.org/files/ENCFF466XKF/@@download/ENCFF466XKF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF007ROG bigWig signal p-value ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF291BBG, ENCFF741TQN 453441427 ENCODE Processing Pipeline 1fdbf0a49e1951d1a4a61e02943ae868 https://www.encodeproject.org/files/ENCFF007ROG/@@download/ENCFF007ROG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF338SZN bigWig signal p-value ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF195HUS, ENCFF249PQD, ENCFF741TQN 471867868 ENCODE Processing Pipeline 6d15ac6f5264386c487c52b8f266e222 https://www.encodeproject.org/files/ENCFF338SZN/@@download/ENCFF338SZN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF846UEJ bigWig signal p-value ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HUS, ENCFF249PQD, ENCFF291BBG, ENCFF741TQN 546093610 ENCODE Processing Pipeline 9fcdb2748d82fae7251469986215778a https://www.encodeproject.org/files/ENCFF846UEJ/@@download/ENCFF846UEJ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF128SGR bigWig fold change over control ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF291BBG, ENCFF741TQN 309137001 ENCODE Processing Pipeline cd5e0d071e8ae7701b1ac312ad199996 https://www.encodeproject.org/files/ENCFF128SGR/@@download/ENCFF128SGR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF335DCT bigWig fold change over control ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF195HUS, ENCFF249PQD, ENCFF741TQN 262193343 ENCODE Processing Pipeline fc5dea6465f0929012ece39fdd713f24 https://www.encodeproject.org/files/ENCFF335DCT/@@download/ENCFF335DCT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF322BAY bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF291BBG, ENCFF741TQN 4639914 ENCODE Processing Pipeline 2ff583799ccfea80c1891ce991ee92a6 https://www.encodeproject.org/files/ENCFF322BAY/@@download/ENCFF322BAY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF632CDU bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HUS, ENCFF249PQD, ENCFF291BBG, ENCFF741TQN 5137490 ENCODE Processing Pipeline 49297da0b5c8619b6167087ba54230dc https://www.encodeproject.org/files/ENCFF632CDU/@@download/ENCFF632CDU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF353IMU bigWig fold change over control ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HUS, ENCFF249PQD, ENCFF291BBG, ENCFF741TQN 469076942 ENCODE Processing Pipeline 5bc6483061f0b5dd92e2b85b396174b6 https://www.encodeproject.org/files/ENCFF353IMU/@@download/ENCFF353IMU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF873CMX bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF195HUS, ENCFF249PQD, ENCFF741TQN 3331637 ENCODE Processing Pipeline 06145539f63a6adb24d222aace13aa81 https://www.encodeproject.org/files/ENCFF873CMX/@@download/ENCFF873CMX.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF946DTX bigBed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF322BAY 10666665 ENCODE Processing Pipeline d5706f8f788572a8419cba31fa29960f https://www.encodeproject.org/files/ENCFF946DTX/@@download/ENCFF946DTX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF315VSJ bigBed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF873CMX 8055327 ENCODE Processing Pipeline cd73dbe9f84f3e3e5cafdb040434c33f https://www.encodeproject.org/files/ENCFF315VSJ/@@download/ENCFF315VSJ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF742PGK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF986RRJ 211633 ENCODE Processing Pipeline a2b2905d92181a1f63d9499273e0ab69 https://www.encodeproject.org/files/ENCFF742PGK/@@download/ENCFF742PGK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF871PBV bigBed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF632CDU 11107657 ENCODE Processing Pipeline f0aca6cc13df9812b54fe003309ca209 https://www.encodeproject.org/files/ENCFF871PBV/@@download/ENCFF871PBV.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF757KNN bed narrowPeak conservative idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF322BAY, ENCFF419RSJ, ENCFF632CDU, ENCFF873CMX 74535 ENCODE Processing Pipeline a140de182960f816879c01347809cd05 https://www.encodeproject.org/files/ENCFF757KNN/@@download/ENCFF757KNN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF986RRJ bed narrowPeak optimal idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF322BAY, ENCFF419RSJ, ENCFF632CDU, ENCFF873CMX 83979 ENCODE Processing Pipeline 537f45e952b7957963fcba3d2bc28c62 https://www.encodeproject.org/files/ENCFF986RRJ/@@download/ENCFF986RRJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF717YTE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF757KNN 198046 ENCODE Processing Pipeline d7ccdee744c60584f37808c51cb90cd7 https://www.encodeproject.org/files/ENCFF717YTE/@@download/ENCFF717YTE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF753XSF bam unfiltered alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DQA, ENCFF002EGQ, ENCFF807MUK 6645948010 ENCODE Processing Pipeline fc43af51fbf5ae7771fed013f468e3d5 https://www.encodeproject.org/files/ENCFF753XSF/@@download/ENCFF753XSF.bam hg19 released mild to moderate bottlenecking ENCFF793JRX bam unfiltered alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPY, ENCFF002EGY, ENCFF807MUK 6114613012 ENCODE Processing Pipeline 8f12819cfc2f25a95878029f811f74d9 https://www.encodeproject.org/files/ENCFF793JRX/@@download/ENCFF793JRX.bam hg19 released mild to moderate bottlenecking ENCFF432OFP bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF221NPH, ENCFF429HOM, ENCFF583FAG 1637290152 ENCODE Processing Pipeline f76a35de80d7a63da27dadf42096f060 https://www.encodeproject.org/files/ENCFF432OFP/@@download/ENCFF432OFP.bigWig hg19 released mild to moderate bottlenecking ENCFF002DPY fastq reads ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGY 2822805135 Michael Snyder, Stanford 83a6c8281d5e122540cd92489c11893e SRA:SRR5111966 https://www.encodeproject.org/files/ENCFF002DPY/@@download/ENCFF002DPY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking ENCFF002DQA fastq reads ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGQ 3082123749 Michael Snyder, Stanford 91f3cec1426f359dea74437fb59ff191 SRA:SRR5111967 https://www.encodeproject.org/files/ENCFF002DQA/@@download/ENCFF002DQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking ENCFF002EGQ fastq reads ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DQA 3154443187 Michael Snyder, Stanford fe36878247843687d3960e98adb226f8 SRA:SRR5111967 https://www.encodeproject.org/files/ENCFF002EGQ/@@download/ENCFF002EGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking ENCFF002EGY fastq reads ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPY 2851672114 Michael Snyder, Stanford 79e49cf6d7edf8bc1e006d03a5158656 SRA:SRR5111966 https://www.encodeproject.org/files/ENCFF002EGY/@@download/ENCFF002EGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking ENCFF292VCE bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF221NPH, ENCFF429HOM, ENCFF583FAG 2186279556 ENCODE Processing Pipeline 6071f6421b3af8fb3666e607b3b1923d https://www.encodeproject.org/files/ENCFF292VCE/@@download/ENCFF292VCE.bigWig hg19 released mild to moderate bottlenecking ENCFF012KYI bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG 6781218 ENCODE Processing Pipeline cacd1d6ef9b917be0adc3681cc09c9e2 https://www.encodeproject.org/files/ENCFF012KYI/@@download/ENCFF012KYI.bed.gz hg19 released mild to moderate bottlenecking ENCFF586OYO bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 6659170 ENCODE Processing Pipeline c52b140dffc33236cb7f4de8c8ede3f6 https://www.encodeproject.org/files/ENCFF586OYO/@@download/ENCFF586OYO.bed.gz hg19 released mild to moderate bottlenecking ENCFF484KOR bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF221NPH, ENCFF429HOM, ENCFF583FAG 7189040 ENCODE Processing Pipeline e3666c481af3da5a832cbace31be0c75 https://www.encodeproject.org/files/ENCFF484KOR/@@download/ENCFF484KOR.bed.gz hg19 released mild to moderate bottlenecking ENCFF061XQR bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF484KOR 13398680 ENCODE Processing Pipeline 26af6e8a9c58240309524460b4475205 https://www.encodeproject.org/files/ENCFF061XQR/@@download/ENCFF061XQR.bigBed hg19 released mild to moderate bottlenecking ENCFF184XHT bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF012KYI 13542817 ENCODE Processing Pipeline 480993993cb84f224d78edb962179cd5 https://www.encodeproject.org/files/ENCFF184XHT/@@download/ENCFF184XHT.bigBed hg19 released mild to moderate bottlenecking ENCFF403UXS bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF586OYO 13300520 ENCODE Processing Pipeline 9726ba02cde8e7d18c801d94ca9f946f https://www.encodeproject.org/files/ENCFF403UXS/@@download/ENCFF403UXS.bigBed hg19 released mild to moderate bottlenecking ENCFF675FJH bigBed narrowPeak conservative idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF341PUT 1210714 ENCODE Processing Pipeline 501e6a7152df2e6c58ed0788fa28ad84 https://www.encodeproject.org/files/ENCFF675FJH/@@download/ENCFF675FJH.bigBed hg19 released mild to moderate bottlenecking ENCFF100ULY bigBed narrowPeak optimal idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF628SBD 1245066 ENCODE Processing Pipeline 6f574a4f583c4becd75883c585ca0d23 https://www.encodeproject.org/files/ENCFF100ULY/@@download/ENCFF100ULY.bigBed hg19 released mild to moderate bottlenecking ENCFF341PUT bed narrowPeak conservative idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF012KYI, ENCFF484KOR, ENCFF586OYO 614374 ENCODE Processing Pipeline f03442d03a6cef235e1a48524ac2bb11 https://www.encodeproject.org/files/ENCFF341PUT/@@download/ENCFF341PUT.bed.gz hg19 released mild to moderate bottlenecking ENCFF628SBD bed narrowPeak optimal idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF012KYI, ENCFF484KOR, ENCFF586OYO 622826 ENCODE Processing Pipeline da9f6a09b033a047b60fe4152bb04d96 https://www.encodeproject.org/files/ENCFF628SBD/@@download/ENCFF628SBD.bed.gz hg19 released mild to moderate bottlenecking ENCFF221NPH bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DQA, ENCFF002EGQ, ENCFF807MUK 5581802842 ENCODE Processing Pipeline 2c4722455b9f1a3d899fc5d2b4c768e8 https://www.encodeproject.org/files/ENCFF221NPH/@@download/ENCFF221NPH.bam hg19 released mild to moderate bottlenecking ENCFF429HOM bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPY, ENCFF002EGY, ENCFF807MUK 4989500683 ENCODE Processing Pipeline d45f8eae7d0577df2ca2c47873337b96 https://www.encodeproject.org/files/ENCFF429HOM/@@download/ENCFF429HOM.bam hg19 released mild to moderate bottlenecking ENCFF431JUL bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG 1688773474 ENCODE Processing Pipeline ae87b3e096d00d4dc93bcb96acaa5b8c https://www.encodeproject.org/files/ENCFF431JUL/@@download/ENCFF431JUL.bigWig hg19 released mild to moderate bottlenecking ENCFF276VRE bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 1099321769 ENCODE Processing Pipeline ec4bf07b357993207b555dc251fcbee9 https://www.encodeproject.org/files/ENCFF276VRE/@@download/ENCFF276VRE.bigWig hg19 released mild to moderate bottlenecking ENCFF713PTS bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF221NPH, ENCFF429HOM, ENCFF583FAG 1614815383 ENCODE Processing Pipeline ce65224ef5b5fbdebc256546aa32ad70 https://www.encodeproject.org/files/ENCFF713PTS/@@download/ENCFF713PTS.bigWig hg19 archived mild to moderate bottlenecking ENCFF101WGH bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 1163348413 ENCODE Processing Pipeline 2a9b81c27c22afa49418a346901445b9 https://www.encodeproject.org/files/ENCFF101WGH/@@download/ENCFF101WGH.bigWig hg19 released mild to moderate bottlenecking ENCFF670CEV bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG 1656514714 ENCODE Processing Pipeline 91efb3f28f078097dbc3c722c7727920 https://www.encodeproject.org/files/ENCFF670CEV/@@download/ENCFF670CEV.bigWig hg19 released mild to moderate bottlenecking ENCFF528VWM bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG 6888367 ENCODE Processing Pipeline 90a1f1092f89675bc82555319201eff4 https://www.encodeproject.org/files/ENCFF528VWM/@@download/ENCFF528VWM.bed.gz hg19 archived mild to moderate bottlenecking ENCFF463JPP bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF221NPH, ENCFF429HOM, ENCFF583FAG 7197597 ENCODE Processing Pipeline 9ed512bea3a18478b465d923da8fadf8 https://www.encodeproject.org/files/ENCFF463JPP/@@download/ENCFF463JPP.bed.gz hg19 archived mild to moderate bottlenecking ENCFF551GNK bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF528VWM 13544821 ENCODE Processing Pipeline a94ee908742369f0c36be3e9a1694b13 https://www.encodeproject.org/files/ENCFF551GNK/@@download/ENCFF551GNK.bigBed hg19 archived mild to moderate bottlenecking ENCFF277XWN bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF221NPH, ENCFF429HOM, ENCFF583FAG 2164488396 ENCODE Processing Pipeline edcdcd8d98b65b8b22d0c560fe134dad https://www.encodeproject.org/files/ENCFF277XWN/@@download/ENCFF277XWN.bigWig hg19 archived mild to moderate bottlenecking ENCFF954OSU bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF531WHZ 13306644 ENCODE Processing Pipeline bec78543618b6368b315a9363ea72392 https://www.encodeproject.org/files/ENCFF954OSU/@@download/ENCFF954OSU.bigBed hg19 archived mild to moderate bottlenecking ENCFF531WHZ bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 6763828 ENCODE Processing Pipeline e2fd6e82431d48910046afc9e6e2840a https://www.encodeproject.org/files/ENCFF531WHZ/@@download/ENCFF531WHZ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF749JDD bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF463JPP 13415366 ENCODE Processing Pipeline d62afead092db529a2f151b4652ce9da https://www.encodeproject.org/files/ENCFF749JDD/@@download/ENCFF749JDD.bigBed hg19 archived mild to moderate bottlenecking ENCFF440LWN bam unfiltered alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPY, ENCFF002EGY, ENCFF643CGH 6125762536 ENCODE Processing Pipeline 243da43718038e1d3a400891a3129070 https://www.encodeproject.org/files/ENCFF440LWN/@@download/ENCFF440LWN.bam GRCh38 released mild to moderate bottlenecking ENCFF174PVV bam unfiltered alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DQA, ENCFF002EGQ, ENCFF643CGH 6657243063 ENCODE Processing Pipeline 4ec576685baf1c9b94a5fc7c422cfe8d https://www.encodeproject.org/files/ENCFF174PVV/@@download/ENCFF174PVV.bam GRCh38 released mild to moderate bottlenecking ENCFF507UWE bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPY, ENCFF002EGY, ENCFF643CGH 4993270501 ENCODE Processing Pipeline 91047f8a698cc7544fc314403efc73f5 https://www.encodeproject.org/files/ENCFF507UWE/@@download/ENCFF507UWE.bam GRCh38 released mild to moderate bottlenecking ENCFF984BZB bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DQA, ENCFF002EGQ, ENCFF643CGH 5585894044 ENCODE Processing Pipeline 79bff9af909393513c8fa8846a8d4bad https://www.encodeproject.org/files/ENCFF984BZB/@@download/ENCFF984BZB.bam GRCh38 released mild to moderate bottlenecking ENCFF605IOB bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF984BZB 1694038457 ENCODE Processing Pipeline dcf6bf49fa640902c6fc957025cdbe36 https://www.encodeproject.org/files/ENCFF605IOB/@@download/ENCFF605IOB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF155DED bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF507UWE 918990016 ENCODE Processing Pipeline 562487614e1c642ec84e19e700f2d7af https://www.encodeproject.org/files/ENCFF155DED/@@download/ENCFF155DED.bigWig GRCh38 released mild to moderate bottlenecking ENCFF946POD bigWig signal p-value ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF507UWE, ENCFF984BZB 1689723963 ENCODE Processing Pipeline 27bd2c56d5a1c0b2f30ef614ff409259 https://www.encodeproject.org/files/ENCFF946POD/@@download/ENCFF946POD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF073CMK bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF984BZB 1658483065 ENCODE Processing Pipeline 8e55526103d16896570c76197ac64764 https://www.encodeproject.org/files/ENCFF073CMK/@@download/ENCFF073CMK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF818BDW bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF507UWE 1212413740 ENCODE Processing Pipeline 4a444b848ad7830e62018cb2d8ad52ed https://www.encodeproject.org/files/ENCFF818BDW/@@download/ENCFF818BDW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF030VXP bigWig fold change over control ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF507UWE, ENCFF984BZB 2203810431 ENCODE Processing Pipeline 9bb437b5113d7b8030ef1837451bf5df https://www.encodeproject.org/files/ENCFF030VXP/@@download/ENCFF030VXP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF936BDU bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF984BZB 6778710 ENCODE Processing Pipeline 04f5dc0cc8786e8bfbb1331a50e30e46 https://www.encodeproject.org/files/ENCFF936BDU/@@download/ENCFF936BDU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF879ZSG bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF936BDU 13589857 ENCODE Processing Pipeline c2ca57435293e05b1f6bd99f490a26c4 https://www.encodeproject.org/files/ENCFF879ZSG/@@download/ENCFF879ZSG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF727IGQ bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF291AFY, ENCFF507UWE 6701358 ENCODE Processing Pipeline 8873191bc448ae864e47ff58e51af2d3 https://www.encodeproject.org/files/ENCFF727IGQ/@@download/ENCFF727IGQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF218DLB bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF507UWE, ENCFF984BZB 7221728 ENCODE Processing Pipeline 854ea61ac31c7e8dc3b6bf27bf77eab2 https://www.encodeproject.org/files/ENCFF218DLB/@@download/ENCFF218DLB.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF484ZCA bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF727IGQ 13365372 ENCODE Processing Pipeline 8a54a56b6d905958317e8852f1207605 https://www.encodeproject.org/files/ENCFF484ZCA/@@download/ENCFF484ZCA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF541TCB bigBed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF218DLB 13458642 ENCODE Processing Pipeline 52141e36aa5552ea7aadb331ad535b2f https://www.encodeproject.org/files/ENCFF541TCB/@@download/ENCFF541TCB.bigBed GRCh38 released mild to moderate bottlenecking ENCFF357PKF bigBed narrowPeak conservative idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF239NEA 1227318 ENCODE Processing Pipeline 763ca2f2c6fd4a460e7683b2216dcf62 https://www.encodeproject.org/files/ENCFF357PKF/@@download/ENCFF357PKF.bigBed GRCh38 released mild to moderate bottlenecking ENCFF239NEA bed narrowPeak conservative idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF218DLB, ENCFF419RSJ, ENCFF727IGQ, ENCFF936BDU 624078 ENCODE Processing Pipeline c16239e843194a00774d3678fa671587 https://www.encodeproject.org/files/ENCFF239NEA/@@download/ENCFF239NEA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF300BFS bigBed narrowPeak optimal idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF432GSK 1272046 ENCODE Processing Pipeline d864f3e7886bca8cdb7bf35c66ee1993 https://www.encodeproject.org/files/ENCFF300BFS/@@download/ENCFF300BFS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF432GSK bed narrowPeak optimal idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF218DLB, ENCFF419RSJ, ENCFF727IGQ, ENCFF936BDU 637308 ENCODE Processing Pipeline 0615563fe68863c58380b60a19275c3a https://www.encodeproject.org/files/ENCFF432GSK/@@download/ENCFF432GSK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF566CYH bed narrowPeak conservative idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF463JPP, ENCFF528VWM, ENCFF531WHZ 530410 ENCODE Processing Pipeline f77e91922fd2043d79e4b03233e45899 https://www.encodeproject.org/files/ENCFF566CYH/@@download/ENCFF566CYH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF412CLP bed narrowPeak optimal idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF463JPP, ENCFF528VWM, ENCFF531WHZ 548160 ENCODE Processing Pipeline c81fa39d52f49f8bcf8dbf46d349160e https://www.encodeproject.org/files/ENCFF412CLP/@@download/ENCFF412CLP.bed.gz hg19 archived mild to moderate bottlenecking ENCFF856JCD bigBed narrowPeak optimal idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF412CLP 893160 ENCODE Processing Pipeline 3c1c74a575a9008b88d27b34dbd22600 https://www.encodeproject.org/files/ENCFF856JCD/@@download/ENCFF856JCD.bigBed hg19 archived mild to moderate bottlenecking ENCFF948UAI bigBed narrowPeak conservative idr thresholded peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF566CYH 1091505 ENCODE Processing Pipeline 8f55b5b01217cdc09bca73c7f7b699e2 https://www.encodeproject.org/files/ENCFF948UAI/@@download/ENCFF948UAI.bigBed hg19 archived mild to moderate bottlenecking ENCFF146EKI fastq reads ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF102DIC 3249904040 Michael Snyder, Stanford 535849d6890a9650b423374fa97aaee9 SRA:SRR6214180 https://www.encodeproject.org/files/ENCFF146EKI/@@download/ENCFF146EKI.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF025RHU fastq reads ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF562VET 1908829095 Michael Snyder, Stanford 1c180dcd00aed6e578b9459e8262ce4e SRA:SRR6214181 https://www.encodeproject.org/files/ENCFF025RHU/@@download/ENCFF025RHU.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF102DIC fastq reads ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF146EKI 3524504765 Michael Snyder, Stanford b531501479d0eef4dfef305bcdce0cc5 SRA:SRR6214180 https://www.encodeproject.org/files/ENCFF102DIC/@@download/ENCFF102DIC.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF562VET fastq reads ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF025RHU 1946050581 Michael Snyder, Stanford 010721e6e55850cb4bfe58a6fe9b9366 SRA:SRR6214181 https://www.encodeproject.org/files/ENCFF562VET/@@download/ENCFF562VET.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF029WOR bam unfiltered alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF025RHU, ENCFF562VET, ENCFF643CGH 3915468029 ENCODE Processing Pipeline 2167c779241b4a5209419c79db7522b4 https://www.encodeproject.org/files/ENCFF029WOR/@@download/ENCFF029WOR.bam GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF856QWF bam unfiltered alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF025RHU, ENCFF562VET, ENCFF807MUK 3911053477 ENCODE Processing Pipeline 506aedc8880358dd73062ac9f30b091b https://www.encodeproject.org/files/ENCFF856QWF/@@download/ENCFF856QWF.bam hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF133RCP bam unfiltered alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF102DIC, ENCFF146EKI, ENCFF807MUK 6467796041 ENCODE Processing Pipeline 5cc0a371d1ff1e4d81becb20de5c4c1b https://www.encodeproject.org/files/ENCFF133RCP/@@download/ENCFF133RCP.bam hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF161YUM bam unfiltered alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF102DIC, ENCFF146EKI, ENCFF643CGH 6473942679 ENCODE Processing Pipeline e68ea45e2718810c125120371f618382 https://www.encodeproject.org/files/ENCFF161YUM/@@download/ENCFF161YUM.bam GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF965SIW bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF025RHU, ENCFF562VET, ENCFF807MUK 3002077249 ENCODE Processing Pipeline 0342a0364865da554fc8e144475cdc21 https://www.encodeproject.org/files/ENCFF965SIW/@@download/ENCFF965SIW.bam hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF149WGG bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF025RHU, ENCFF562VET, ENCFF643CGH 3003618186 ENCODE Processing Pipeline 5fca0478689e3b882811aa2fa76daefe https://www.encodeproject.org/files/ENCFF149WGG/@@download/ENCFF149WGG.bam GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF254NNQ bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF102DIC, ENCFF146EKI, ENCFF807MUK 4709764038 ENCODE Processing Pipeline da3da205c505170306315d618b18670b https://www.encodeproject.org/files/ENCFF254NNQ/@@download/ENCFF254NNQ.bam hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF315DCZ bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF102DIC, ENCFF146EKI, ENCFF643CGH 4712714583 ENCODE Processing Pipeline 8c4ba40cc470e3e7de5306acef6522f0 https://www.encodeproject.org/files/ENCFF315DCZ/@@download/ENCFF315DCZ.bam GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF847QTX bigWig signal p-value ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF965SIW 1108901588 ENCODE Processing Pipeline f5b5aae56dea2955890ac97289fa3606 https://www.encodeproject.org/files/ENCFF847QTX/@@download/ENCFF847QTX.bigWig hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF517INS bigWig signal p-value ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF254NNQ, ENCFF834TUP, ENCFF965SIW 1824296707 ENCODE Processing Pipeline e2c9ff5cc6fea34b00e0e8b2cb1f76a3 https://www.encodeproject.org/files/ENCFF517INS/@@download/ENCFF517INS.bigWig hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF023VPI bigWig fold change over control ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF965SIW 1088916758 ENCODE Processing Pipeline ecd44571ce783270c981967821f643c6 https://www.encodeproject.org/files/ENCFF023VPI/@@download/ENCFF023VPI.bigWig hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF788ZYS bigWig signal p-value ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF254NNQ, ENCFF834TUP 1305621525 ENCODE Processing Pipeline 30fc824d328bbe79e9c59afb3d03495f https://www.encodeproject.org/files/ENCFF788ZYS/@@download/ENCFF788ZYS.bigWig hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF581VQP bigWig fold change over control ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF254NNQ, ENCFF834TUP 1523338557 ENCODE Processing Pipeline 712426208cf4ecbebb8c4acb08ba4a28 https://www.encodeproject.org/files/ENCFF581VQP/@@download/ENCFF581VQP.bigWig hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF490IPR bigWig fold change over control ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF254NNQ, ENCFF834TUP, ENCFF965SIW 2240537448 ENCODE Processing Pipeline dd3a518b7df7d2a85db60367b9924aea https://www.encodeproject.org/files/ENCFF490IPR/@@download/ENCFF490IPR.bigWig hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF735EGA bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF965SIW 6692518 ENCODE Processing Pipeline 6a302f9366a47443547a372527ca43ee https://www.encodeproject.org/files/ENCFF735EGA/@@download/ENCFF735EGA.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF358FIT bigBed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF406JPU 13066526 ENCODE Processing Pipeline 0ec84a393c666a790ef7676356baded0 https://www.encodeproject.org/files/ENCFF358FIT/@@download/ENCFF358FIT.bigBed hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF497RBU bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF254NNQ, ENCFF834TUP 7172441 ENCODE Processing Pipeline 85544aad8c0d6fb0f2a0e380f554bd76 https://www.encodeproject.org/files/ENCFF497RBU/@@download/ENCFF497RBU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF406JPU bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF254NNQ, ENCFF834TUP, ENCFF965SIW 7259842 ENCODE Processing Pipeline a4bc031f28c53690a1aadf54849668d3 https://www.encodeproject.org/files/ENCFF406JPU/@@download/ENCFF406JPU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF297OMH bed narrowPeak conservative idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF406JPU, ENCFF497RBU, ENCFF735EGA 221244 ENCODE Processing Pipeline d4977f294535235cf778989c2dec3822 https://www.encodeproject.org/files/ENCFF297OMH/@@download/ENCFF297OMH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF493MEL bigBed narrowPeak conservative idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF543SCH 541525 ENCODE Processing Pipeline 9cb241a32e9723aa73135133ad902b3f https://www.encodeproject.org/files/ENCFF493MEL/@@download/ENCFF493MEL.bigBed hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched status, mismatched file status ENCFF664ZGR bed narrowPeak optimal idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF406JPU, ENCFF497RBU, ENCFF735EGA 286705 ENCODE Processing Pipeline 99866240a9404333b974b22bd1667736 https://www.encodeproject.org/files/ENCFF664ZGR/@@download/ENCFF664ZGR.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF270WNW bigBed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF735EGA 13158172 ENCODE Processing Pipeline b60586b1f1d23cdfd6a50a4d4cb63da4 https://www.encodeproject.org/files/ENCFF270WNW/@@download/ENCFF270WNW.bigBed hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF072KAB bigBed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF497RBU 13028892 ENCODE Processing Pipeline 3c8dab9969bbb9e272224fec29db44bd https://www.encodeproject.org/files/ENCFF072KAB/@@download/ENCFF072KAB.bigBed hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF732KCI bigBed narrowPeak optimal idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF461MGR 651022 ENCODE Processing Pipeline 3afea4b3ac1e45eb4d7bb0d8750dfc9e https://www.encodeproject.org/files/ENCFF732KCI/@@download/ENCFF732KCI.bigBed hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched status, mismatched file status ENCFF301CSJ bigWig signal p-value ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF149WGG, ENCFF790TAN 1019418977 ENCODE Processing Pipeline abb134ab656a3634c9d2fba655b06293 https://www.encodeproject.org/files/ENCFF301CSJ/@@download/ENCFF301CSJ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF654AWT bigWig signal p-value ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF315DCZ, ENCFF712WXB 1301311294 ENCODE Processing Pipeline c271d6dbf23b1550a792f6cbf8e3e2e7 https://www.encodeproject.org/files/ENCFF654AWT/@@download/ENCFF654AWT.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF818PQS bigWig signal p-value ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF149WGG, ENCFF315DCZ, ENCFF712WXB, ENCFF790TAN 1848166236 ENCODE Processing Pipeline bde9d951930e57f645106854ef703b48 https://www.encodeproject.org/files/ENCFF818PQS/@@download/ENCFF818PQS.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF505MMO bigWig fold change over control ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF149WGG, ENCFF790TAN 1092912885 ENCODE Processing Pipeline 989af4dc7597d807ebc3b55e9e50fd36 https://www.encodeproject.org/files/ENCFF505MMO/@@download/ENCFF505MMO.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF324PFP bigWig fold change over control ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF315DCZ, ENCFF712WXB 1496472184 ENCODE Processing Pipeline a3b6dbcc11b3980fad79c5aa6e473ae4 https://www.encodeproject.org/files/ENCFF324PFP/@@download/ENCFF324PFP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF987BMP bigWig fold change over control ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF149WGG, ENCFF315DCZ, ENCFF712WXB, ENCFF790TAN 2261915647 ENCODE Processing Pipeline f262755bf5f4ef3ab71445ea09c0cc2b https://www.encodeproject.org/files/ENCFF987BMP/@@download/ENCFF987BMP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF852JOM bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF315DCZ, ENCFF712WXB 7122748 ENCODE Processing Pipeline f9efad505808eb1be5230fcd9a4aaf96 https://www.encodeproject.org/files/ENCFF852JOM/@@download/ENCFF852JOM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF492LLG bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF149WGG, ENCFF790TAN 6570700 ENCODE Processing Pipeline 36fcc01d2831f669db7f8c1f73f9cd15 https://www.encodeproject.org/files/ENCFF492LLG/@@download/ENCFF492LLG.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF477IDC bed narrowPeak conservative idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF272PSH, ENCFF419RSJ, ENCFF492LLG, ENCFF852JOM 221082 ENCODE Processing Pipeline fb2e2a70c2ef942d80157f996139f369 https://www.encodeproject.org/files/ENCFF477IDC/@@download/ENCFF477IDC.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF272PSH bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF149WGG, ENCFF315DCZ, ENCFF712WXB, ENCFF790TAN 7257859 ENCODE Processing Pipeline 9dac8e1c7d8822de2b7787d37b2e8918 https://www.encodeproject.org/files/ENCFF272PSH/@@download/ENCFF272PSH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF017CEV bigBed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF492LLG 13163764 ENCODE Processing Pipeline 6f1707a2a52d338c40793db3aa05139e https://www.encodeproject.org/files/ENCFF017CEV/@@download/ENCFF017CEV.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF901OGD bigBed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF852JOM 13025058 ENCODE Processing Pipeline 1de8d208c746712ea2518c80ca7ce7f7 https://www.encodeproject.org/files/ENCFF901OGD/@@download/ENCFF901OGD.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF023XHV bed narrowPeak optimal idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF272PSH, ENCFF419RSJ, ENCFF492LLG, ENCFF852JOM 289552 ENCODE Processing Pipeline 054dea6f6c2879fc4cb6179c342a2214 https://www.encodeproject.org/files/ENCFF023XHV/@@download/ENCFF023XHV.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF826HUX bigBed narrowPeak optimal idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF023XHV 657513 ENCODE Processing Pipeline 2d6b06f5c8e2f6dfe405c7ca8784978b https://www.encodeproject.org/files/ENCFF826HUX/@@download/ENCFF826HUX.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF475DJP bigBed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF272PSH 13069053 ENCODE Processing Pipeline 8dd2d43ed689acfd64a2e86dec037dd1 https://www.encodeproject.org/files/ENCFF475DJP/@@download/ENCFF475DJP.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF854SXG bigBed narrowPeak conservative idr thresholded peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF477IDC 544232 ENCODE Processing Pipeline be5a07d277e2b896b3e8301f53a91390 https://www.encodeproject.org/files/ENCFF854SXG/@@download/ENCFF854SXG.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF000NLB bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NLI 760832442 Richard Myers, HAIB 01e37e53b7620be9aab3794e348ef3bf https://www.encodeproject.org/files/ENCFF000NLB/@@download/ENCFF000NLB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLC bigBed broadPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TUP 131358 Richard Myers, HAIB c573a199668931fecc2f065a13cdc742 https://www.encodeproject.org/files/ENCFF000NLC/@@download/ENCFF000NLC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLD bigBed broadPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TUQ 122101 Richard Myers, HAIB 50014ec3405bac55d25b58f12ed65917 https://www.encodeproject.org/files/ENCFF000NLD/@@download/ENCFF000NLD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLE bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NLK 966741363 Richard Myers, HAIB 2ed1f96fd9ac4c28a0497602cf2de0ae https://www.encodeproject.org/files/ENCFF000NLE/@@download/ENCFF000NLE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLF bigWig raw signal ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 4850352 Richard Myers, HAIB 951c512d96555ce35bb93b1b1f740ba2 https://www.encodeproject.org/files/ENCFF000NLF/@@download/ENCFF000NLF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000NLG bigWig raw signal ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 6215222 Richard Myers, HAIB c7179addc1661dc5c197bc5681b4d0fe https://www.encodeproject.org/files/ENCFF000NLG/@@download/ENCFF000NLG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000NLI fastq reads ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 743254121 Richard Myers, HAIB c020d943ec6fdfd3f5923dbf79fb6017 https://www.encodeproject.org/files/ENCFF000NLI/@@download/ENCFF000NLI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NLT/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLK fastq reads ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 857623737 Richard Myers, HAIB 94fc07040dcbd7341ed78fb788c5d61c https://www.encodeproject.org/files/ENCFF000NLK/@@download/ENCFF000NLK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NLU/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001TUP bed broadPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 42206 Richard Myers, HAIB c8257e9aa8446c0f499650561224a9f7 https://www.encodeproject.org/files/ENCFF001TUP/@@download/ENCFF001TUP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001TUQ bed broadPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36454 Richard Myers, HAIB 173aee593cda3a404818b08329850fbb https://www.encodeproject.org/files/ENCFF001TUQ/@@download/ENCFF001TUQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CGI bed narrowPeak optimal idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 114872 ENCODE Consortium Analysis Working Group 24d6079f95b3d4eb84d699296b9a8a73 https://www.encodeproject.org/files/ENCFF002CGI/@@download/ENCFF002CGI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF955XXY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGI 376941 ENCODE Consortium 11c3edf89dafc8d0cecbd23f32870b0a https://www.encodeproject.org/files/ENCFF955XXY/@@download/ENCFF955XXY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF888ZGR bam unfiltered alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NLI, ENCFF643CGH 955071063 ENCODE Processing Pipeline a3a0a653b2cbe50a24a327e835884348 https://www.encodeproject.org/files/ENCFF888ZGR/@@download/ENCFF888ZGR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF936SHM bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NLI, ENCFF643CGH 500423052 ENCODE Processing Pipeline db86d88e1015ce6694ff52cd813d1e80 https://www.encodeproject.org/files/ENCFF936SHM/@@download/ENCFF936SHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF720TRV bam unfiltered alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NLK, ENCFF643CGH 1181643069 ENCODE Processing Pipeline 758b01f0d3ffb80d4dff4f9ba9a56001 https://www.encodeproject.org/files/ENCFF720TRV/@@download/ENCFF720TRV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF481EDX bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NLK, ENCFF643CGH 718732177 ENCODE Processing Pipeline cab79b21dc677de1e37a5804ebe94630 https://www.encodeproject.org/files/ENCFF481EDX/@@download/ENCFF481EDX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF250YWI bam unfiltered alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NLI, ENCFF807MUK 951724123 ENCODE Processing Pipeline f74924b71051dc8cfe23efd7d1fe4b3e https://www.encodeproject.org/files/ENCFF250YWI/@@download/ENCFF250YWI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF670BCP bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NLI, ENCFF807MUK 500713755 ENCODE Processing Pipeline 3897e03663185763e5ec2d43fc6e1b4c https://www.encodeproject.org/files/ENCFF670BCP/@@download/ENCFF670BCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF278VPH bam unfiltered alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NLK, ENCFF807MUK 1176705208 ENCODE Processing Pipeline 9246e5f77dc0e76da3bb85e3498abca7 https://www.encodeproject.org/files/ENCFF278VPH/@@download/ENCFF278VPH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF260DQF bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NLK, ENCFF807MUK 719070058 ENCODE Processing Pipeline 2027875978427e38a244ed4e685236cb https://www.encodeproject.org/files/ENCFF260DQF/@@download/ENCFF260DQF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416MGM bigWig signal p-value ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF703HXP, ENCFF820TDD, ENCFF936SHM 333149449 ENCODE Processing Pipeline 4eaf6114415d182c79d7f07dbc641e34 https://www.encodeproject.org/files/ENCFF416MGM/@@download/ENCFF416MGM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384GNE bigWig signal p-value ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF481EDX, ENCFF703HXP, ENCFF820TDD 390987289 ENCODE Processing Pipeline b23802ab5bb9bb4d22558fb13a4fdcc9 https://www.encodeproject.org/files/ENCFF384GNE/@@download/ENCFF384GNE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF728AZK bigWig signal p-value ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF481EDX, ENCFF703HXP, ENCFF820TDD, ENCFF936SHM 483913059 ENCODE Processing Pipeline d656a4c4e7ca7680ec2365a54f855077 https://www.encodeproject.org/files/ENCFF728AZK/@@download/ENCFF728AZK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF087BIG bigWig fold change over control ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF703HXP, ENCFF820TDD, ENCFF936SHM 227508163 ENCODE Processing Pipeline 04a42e0b7fb4c651ca151f00d3a65df3 https://www.encodeproject.org/files/ENCFF087BIG/@@download/ENCFF087BIG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF340RCD bigWig fold change over control ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF481EDX, ENCFF703HXP, ENCFF820TDD 335352208 ENCODE Processing Pipeline 3512a3f511a5ce2abaeb63c52789469b https://www.encodeproject.org/files/ENCFF340RCD/@@download/ENCFF340RCD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF004DHQ bigWig fold change over control ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF481EDX, ENCFF703HXP, ENCFF820TDD, ENCFF936SHM 510464055 ENCODE Processing Pipeline 4527f54d7befaf2d7f3bb9787a192eb5 https://www.encodeproject.org/files/ENCFF004DHQ/@@download/ENCFF004DHQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF972WBA bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF481EDX, ENCFF703HXP, ENCFF820TDD 4288202 ENCODE Processing Pipeline 26a973b059acd5d2945987d9d09b5a15 https://www.encodeproject.org/files/ENCFF972WBA/@@download/ENCFF972WBA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF917YKW bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF481EDX, ENCFF703HXP, ENCFF820TDD, ENCFF936SHM 4651888 ENCODE Processing Pipeline bc36f99eb9e386c0dde2d47a9a6b56b2 https://www.encodeproject.org/files/ENCFF917YKW/@@download/ENCFF917YKW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF719PQG bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF703HXP, ENCFF820TDD, ENCFF936SHM 3867238 ENCODE Processing Pipeline f6c13c9f30a88ae7417497501941fdbb https://www.encodeproject.org/files/ENCFF719PQG/@@download/ENCFF719PQG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF859PPX bigBed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF972WBA 10782988 ENCODE Processing Pipeline 92f3a33e0b013690f8b6e2597b2d829a https://www.encodeproject.org/files/ENCFF859PPX/@@download/ENCFF859PPX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF519AER bigBed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF917YKW 11142497 ENCODE Processing Pipeline b826419805c43ac43d69ec3f7cb2e71f https://www.encodeproject.org/files/ENCFF519AER/@@download/ENCFF519AER.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF680WIE bigBed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF719PQG 8177744 ENCODE Processing Pipeline e9972bae06942597d14a3df6d42b5982 https://www.encodeproject.org/files/ENCFF680WIE/@@download/ENCFF680WIE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF309HBT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF975LFF 216827 ENCODE Processing Pipeline 6060fad531cfed9401d2c77b83e5aa7a https://www.encodeproject.org/files/ENCFF309HBT/@@download/ENCFF309HBT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF494CWX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF778BLL 241840 ENCODE Processing Pipeline 614daf0231a2c7020c8fa1ce4ab73819 https://www.encodeproject.org/files/ENCFF494CWX/@@download/ENCFF494CWX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF975LFF bed narrowPeak conservative idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF719PQG, ENCFF917YKW, ENCFF972WBA 76412 ENCODE Processing Pipeline 91f8e2cb3114045e982d718d1ebd0801 https://www.encodeproject.org/files/ENCFF975LFF/@@download/ENCFF975LFF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF778BLL bed narrowPeak optimal idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF719PQG, ENCFF917YKW, ENCFF972WBA 91220 ENCODE Processing Pipeline 0eaea4a72ad3ee00aaad34d729cea8d9 https://www.encodeproject.org/files/ENCFF778BLL/@@download/ENCFF778BLL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818BRN bigWig signal p-value ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 332891011 ENCODE Processing Pipeline 62d897539e340330b13a50df1d5676ce https://www.encodeproject.org/files/ENCFF818BRN/@@download/ENCFF818BRN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF672PXH bigWig fold change over control ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 227456692 ENCODE Processing Pipeline 4dc48b6d8991690384f00acfccbd936e https://www.encodeproject.org/files/ENCFF672PXH/@@download/ENCFF672PXH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700GXH bigWig signal p-value ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF260DQF, ENCFF277EKP, ENCFF902HRT 373253548 ENCODE Processing Pipeline aae9c0744d98885d1552eb397fbca825 https://www.encodeproject.org/files/ENCFF700GXH/@@download/ENCFF700GXH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998XAT bigWig fold change over control ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF260DQF, ENCFF277EKP, ENCFF902HRT 342095450 ENCODE Processing Pipeline 2ccaee889a5a4ef4b33f123f0b720ba8 https://www.encodeproject.org/files/ENCFF998XAT/@@download/ENCFF998XAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF605WPL bigWig signal p-value ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260DQF, ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 480774340 ENCODE Processing Pipeline aacc55bf937e7132cf80921b32f9c3d9 https://www.encodeproject.org/files/ENCFF605WPL/@@download/ENCFF605WPL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF977IMH bigWig fold change over control ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260DQF, ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 502058481 ENCODE Processing Pipeline 45f73ac9d4353f394d9a1d1c8123f196 https://www.encodeproject.org/files/ENCFF977IMH/@@download/ENCFF977IMH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF986YIT bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF260DQF, ENCFF277EKP, ENCFF902HRT 4288075 ENCODE Processing Pipeline 65a516199b0ca25e083c873d4791d008 https://www.encodeproject.org/files/ENCFF986YIT/@@download/ENCFF986YIT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF904GCW bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 3661889 ENCODE Processing Pipeline a645018a151b9243fa311099318e11a6 https://www.encodeproject.org/files/ENCFF904GCW/@@download/ENCFF904GCW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF887WVD bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260DQF, ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 4653760 ENCODE Processing Pipeline 5452f11670457bc277eae8b1a7c39034 https://www.encodeproject.org/files/ENCFF887WVD/@@download/ENCFF887WVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF582STA bigBed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF904GCW 7614832 ENCODE Processing Pipeline 4e1d3527700e36c91d1d5322ef66f675 https://www.encodeproject.org/files/ENCFF582STA/@@download/ENCFF582STA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF640RDM bigBed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF986YIT 10778498 ENCODE Processing Pipeline e912e9a855b7f9a047a543ab1f75c2da https://www.encodeproject.org/files/ENCFF640RDM/@@download/ENCFF640RDM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF042QKI bigBed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF887WVD 11137296 ENCODE Processing Pipeline d126067e5807cb07fbe6f37eef100cf2 https://www.encodeproject.org/files/ENCFF042QKI/@@download/ENCFF042QKI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF683UGF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF078ATU 237877 ENCODE Processing Pipeline ff58a632bfe83a8ba8af4f0be15f4081 https://www.encodeproject.org/files/ENCFF683UGF/@@download/ENCFF683UGF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338OXC bed narrowPeak conservative idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF887WVD, ENCFF904GCW, ENCFF986YIT 75555 ENCODE Processing Pipeline 88b0804505ac69de1c541ee4537d0f5e https://www.encodeproject.org/files/ENCFF338OXC/@@download/ENCFF338OXC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259APR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF338OXC 214709 ENCODE Processing Pipeline c4a0a18bb6ce21ff9a61ce22a8b713c0 https://www.encodeproject.org/files/ENCFF259APR/@@download/ENCFF259APR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF078ATU bed narrowPeak optimal idr thresholded peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF887WVD, ENCFF904GCW, ENCFF986YIT 88917 ENCODE Processing Pipeline c2d7cbb3ffcb246c8d1e914492ba66b3 https://www.encodeproject.org/files/ENCFF078ATU/@@download/ENCFF078ATU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF499WBO fastq reads ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF120XAX 3707919006 Michael Snyder, Stanford 7e35b901c1fb6fcb458b10f0b62f8169 SRA:SRR5111890 https://www.encodeproject.org/files/ENCFF499WBO/@@download/ENCFF499WBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF862OIP fastq reads ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF587GLI 2553564481 Michael Snyder, Stanford 94ae959a4f9cf1cff4dfa4a3b572f691 SRA:SRR5111891 https://www.encodeproject.org/files/ENCFF862OIP/@@download/ENCFF862OIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF120XAX fastq reads ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF499WBO 3682959614 Michael Snyder, Stanford 078dda92e28569c305789e34f60a2772 SRA:SRR5111890 https://www.encodeproject.org/files/ENCFF120XAX/@@download/ENCFF120XAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF587GLI fastq reads ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF862OIP 2586289152 Michael Snyder, Stanford 1f532cf5cc1a667e059989172b4c8ba7 SRA:SRR5111891 https://www.encodeproject.org/files/ENCFF587GLI/@@download/ENCFF587GLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF326PST bam unfiltered alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF587GLI, ENCFF807MUK, ENCFF862OIP 5102859097 ENCODE Processing Pipeline 3204b4c5318b7a0b120ceae0886adfa8 https://www.encodeproject.org/files/ENCFF326PST/@@download/ENCFF326PST.bam hg19 released missing genetic modification characterization missing control alignments ENCFF190XJZ bam unfiltered alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF587GLI, ENCFF643CGH, ENCFF862OIP 5106514599 ENCODE Processing Pipeline 8d63694bf3feb5df111d73fb2b13ac1a https://www.encodeproject.org/files/ENCFF190XJZ/@@download/ENCFF190XJZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF909ITL bam unfiltered alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF120XAX, ENCFF499WBO, ENCFF643CGH 7145751715 ENCODE Processing Pipeline 9074ff4ee9299d1d5e5bf8cd43fd4c0f https://www.encodeproject.org/files/ENCFF909ITL/@@download/ENCFF909ITL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF927MKU bam unfiltered alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF120XAX, ENCFF499WBO, ENCFF807MUK 7140556282 ENCODE Processing Pipeline 865850c3a5df868d01a24b7d4a686e03 https://www.encodeproject.org/files/ENCFF927MKU/@@download/ENCFF927MKU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF057NJA bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF587GLI, ENCFF643CGH, ENCFF862OIP 4484750007 ENCODE Processing Pipeline 3f7458a53ecca618e6cbbce95f9b615c https://www.encodeproject.org/files/ENCFF057NJA/@@download/ENCFF057NJA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF823IRF bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF587GLI, ENCFF807MUK, ENCFF862OIP 4485775002 ENCODE Processing Pipeline 990951f94b29e6c9d6d51349e38e0d15 https://www.encodeproject.org/files/ENCFF823IRF/@@download/ENCFF823IRF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF753PKK bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF120XAX, ENCFF499WBO, ENCFF807MUK 6272044251 ENCODE Processing Pipeline d6c56a414a21158990c9dc6c1131e24a https://www.encodeproject.org/files/ENCFF753PKK/@@download/ENCFF753PKK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF078YAS bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF120XAX, ENCFF499WBO, ENCFF643CGH 6271106899 ENCODE Processing Pipeline 744586b5d8e2fb0ddb0f10527a021dd1 https://www.encodeproject.org/files/ENCFF078YAS/@@download/ENCFF078YAS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF538UGE bigWig signal p-value ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF823IRF 1408577446 ENCODE Processing Pipeline 2d8fe3a2e616ee11cb2625983fb02e97 https://www.encodeproject.org/files/ENCFF538UGE/@@download/ENCFF538UGE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF377EYR bigWig signal p-value ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF753PKK 1546266378 ENCODE Processing Pipeline e5f1411b38164e28ac9c81a20ac17734 https://www.encodeproject.org/files/ENCFF377EYR/@@download/ENCFF377EYR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF544YLA bigWig signal p-value ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF753PKK, ENCFF823IRF 1903593855 ENCODE Processing Pipeline 93b9c927e2bd3d367dd9e0fba1513b1e https://www.encodeproject.org/files/ENCFF544YLA/@@download/ENCFF544YLA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF724UVJ bigWig fold change over control ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF823IRF 1337894738 ENCODE Processing Pipeline 539b517e77a135bb85dfe52c9e361133 https://www.encodeproject.org/files/ENCFF724UVJ/@@download/ENCFF724UVJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF128PFA bigWig fold change over control ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF753PKK 1584597551 ENCODE Processing Pipeline 525f56437d8ab19d7190f57a3cf1021d https://www.encodeproject.org/files/ENCFF128PFA/@@download/ENCFF128PFA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF747FLX bigWig fold change over control ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF753PKK, ENCFF823IRF 2052487333 ENCODE Processing Pipeline 6a66885a1bd61f1c099d89eb4a61868e https://www.encodeproject.org/files/ENCFF747FLX/@@download/ENCFF747FLX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF583KAL bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF823IRF 6953323 ENCODE Processing Pipeline 2f1c9cf56b06d66a9f76a9d8929a5934 https://www.encodeproject.org/files/ENCFF583KAL/@@download/ENCFF583KAL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF590PHP bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF753PKK 7021580 ENCODE Processing Pipeline 5e24b0c32c535f79f9eaaa296ed104fb https://www.encodeproject.org/files/ENCFF590PHP/@@download/ENCFF590PHP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF677LYE bigBed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF583KAL 12324383 ENCODE Processing Pipeline 2242d847751fae6addca6a1ae63fdc39 https://www.encodeproject.org/files/ENCFF677LYE/@@download/ENCFF677LYE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF399EOS bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF753PKK, ENCFF823IRF 7064485 ENCODE Processing Pipeline 2c3e9ab4923f5661ed61499fb15a079e https://www.encodeproject.org/files/ENCFF399EOS/@@download/ENCFF399EOS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF215KJK bigBed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF590PHP 12572790 ENCODE Processing Pipeline bf6f03206eef977f51c98a3d57590e1c https://www.encodeproject.org/files/ENCFF215KJK/@@download/ENCFF215KJK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF582BIW bigBed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF399EOS 12538663 ENCODE Processing Pipeline 9e659433351c591cbfe17cf8bf2fae94 https://www.encodeproject.org/files/ENCFF582BIW/@@download/ENCFF582BIW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF047LUI bed narrowPeak optimal idr thresholded peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF399EOS, ENCFF583KAL, ENCFF590PHP 1168060 ENCODE Processing Pipeline 878fa1989de13c176ac84a1bb2789809 https://www.encodeproject.org/files/ENCFF047LUI/@@download/ENCFF047LUI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF087SVD bigBed narrowPeak optimal idr thresholded peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF047LUI 2369741 ENCODE Processing Pipeline 9eaeeffd959602539647f789594a934e https://www.encodeproject.org/files/ENCFF087SVD/@@download/ENCFF087SVD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF439YMA bigWig signal p-value ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF057NJA 1316229456 ENCODE Processing Pipeline 7d44f7d049e74e428dd139aa055b7b16 https://www.encodeproject.org/files/ENCFF439YMA/@@download/ENCFF439YMA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF792GPC bigWig signal p-value ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF078YAS 1530482292 ENCODE Processing Pipeline 1960111a36079f408f28cbe1ad9c1d19 https://www.encodeproject.org/files/ENCFF792GPC/@@download/ENCFF792GPC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF102QUS bigWig signal p-value ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF057NJA, ENCFF078YAS 1890991181 ENCODE Processing Pipeline e012cad6e8e8962ef2a984abcd8b1ec3 https://www.encodeproject.org/files/ENCFF102QUS/@@download/ENCFF102QUS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF321EGG bigWig fold change over control ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF057NJA 1337307875 ENCODE Processing Pipeline 1a26ea96d308b466344421b77107613e https://www.encodeproject.org/files/ENCFF321EGG/@@download/ENCFF321EGG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF448LAK bigWig fold change over control ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF078YAS 1598571309 ENCODE Processing Pipeline bfe633a7c136a31bd548fd398db67224 https://www.encodeproject.org/files/ENCFF448LAK/@@download/ENCFF448LAK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF844WBT bigWig fold change over control ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF057NJA, ENCFF078YAS 2046079761 ENCODE Processing Pipeline c60ad61241d4bb560c542504ffd6e81a https://www.encodeproject.org/files/ENCFF844WBT/@@download/ENCFF844WBT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF752QOS bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF057NJA 6996843 ENCODE Processing Pipeline b98d847a5e9ebfbd79d234b05c47dbfc https://www.encodeproject.org/files/ENCFF752QOS/@@download/ENCFF752QOS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF607FFB bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF078YAS 6992508 ENCODE Processing Pipeline 39f303b3fb28c50f2875be84412404d9 https://www.encodeproject.org/files/ENCFF607FFB/@@download/ENCFF607FFB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF743DMP bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF057NJA, ENCFF078YAS 7033727 ENCODE Processing Pipeline 70f38ba14a716ab436a905589881d457 https://www.encodeproject.org/files/ENCFF743DMP/@@download/ENCFF743DMP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF943DYT bed narrowPeak optimal idr thresholded peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF419RSJ, ENCFF607FFB, ENCFF743DMP, ENCFF752QOS 1163208 ENCODE Processing Pipeline 4abd50cfb4ab0f03db04194115c2c043 https://www.encodeproject.org/files/ENCFF943DYT/@@download/ENCFF943DYT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF458JUK bigBed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF752QOS 12383589 ENCODE Processing Pipeline aec8c5902e3817fdf6fabac91498e953 https://www.encodeproject.org/files/ENCFF458JUK/@@download/ENCFF458JUK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF241KAI bigBed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF607FFB 12544638 ENCODE Processing Pipeline 7161d4fa68f9294e1e702464a03bd813 https://www.encodeproject.org/files/ENCFF241KAI/@@download/ENCFF241KAI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF134EJW bigBed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF743DMP 12508547 ENCODE Processing Pipeline 414e730659086da37942ced17ffae8e8 https://www.encodeproject.org/files/ENCFF134EJW/@@download/ENCFF134EJW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF445KFY bigBed narrowPeak optimal idr thresholded peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF943DYT 2362051 ENCODE Processing Pipeline e3194623eb6a72164a3f81f95b1ccbf6 https://www.encodeproject.org/files/ENCFF445KFY/@@download/ENCFF445KFY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF944QTE fastq reads ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1088529430 Bradley Bernstein, Broad 376af9dce28d2c26ec2bb467bda88c53 https://www.encodeproject.org/files/ENCFF944QTE/@@download/ENCFF944QTE.fastq.gz Illumina HiSeq 2500 /files/ENCFF127IDN/, /files/ENCFF387OBH/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF862PPU fastq reads ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1120915285 Bradley Bernstein, Broad 1b23b1a2bbbfb692e3628321b139b1dd https://www.encodeproject.org/files/ENCFF862PPU/@@download/ENCFF862PPU.fastq.gz Illumina HiSeq 2500 /files/ENCFF127IDN/, /files/ENCFF387OBH/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF245TKJ bam alignments ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF807MUK, ENCFF862PPU, ENCFF944QTE 1782941098 ENCODE Processing Pipeline f1724207b8636c21e9456eceb035c561 https://www.encodeproject.org/files/ENCFF245TKJ/@@download/ENCFF245TKJ.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF791FDM bam unfiltered alignments ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF807MUK, ENCFF862PPU, ENCFF944QTE 2117572037 ENCODE Processing Pipeline ac4e824e744dc6ecc401cefe7e25d038 https://www.encodeproject.org/files/ENCFF791FDM/@@download/ENCFF791FDM.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF934GFV bam unfiltered alignments ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF643CGH, ENCFF862PPU, ENCFF944QTE 2121844514 ENCODE Processing Pipeline 8a1ae9f41a33d4be9817446de399e1c9 https://www.encodeproject.org/files/ENCFF934GFV/@@download/ENCFF934GFV.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF742BWH bam alignments ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF643CGH, ENCFF862PPU, ENCFF944QTE 1784611656 ENCODE Processing Pipeline 4113fc0777957dfc2d7d7fbb4e421744 https://www.encodeproject.org/files/ENCFF742BWH/@@download/ENCFF742BWH.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF197EHO bigWig signal p-value ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF245TKJ, ENCFF937EBV 790390976 ENCODE Processing Pipeline 6fee3ddc78582cc5847577351f7c3600 https://www.encodeproject.org/files/ENCFF197EHO/@@download/ENCFF197EHO.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF571PCW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF558ONH 512170 ENCODE Processing Pipeline c913324d411209fe6962c7874cdc844c https://www.encodeproject.org/files/ENCFF571PCW/@@download/ENCFF571PCW.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF117OCW bigWig fold change over control ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF742BWH, ENCFF742DCE 866819624 ENCODE Processing Pipeline a5a454ec4e3e7fdfe0f1bb52955c38a7 https://www.encodeproject.org/files/ENCFF117OCW/@@download/ENCFF117OCW.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF363MAG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF382FXA, ENCFF419RSJ 513619 ENCODE Processing Pipeline a7c57efced39302cb7795fc7f76a8ae8 https://www.encodeproject.org/files/ENCFF363MAG/@@download/ENCFF363MAG.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF880IOT bigWig signal p-value ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF742BWH, ENCFF742DCE 853246109 ENCODE Processing Pipeline fb74b651c6168baf36f59090581cd3e1 https://www.encodeproject.org/files/ENCFF880IOT/@@download/ENCFF880IOT.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF558ONH bed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF245TKJ, ENCFF937EBV 5355301 ENCODE Processing Pipeline a2c75be92a1492a2e99624038259d179 https://www.encodeproject.org/files/ENCFF558ONH/@@download/ENCFF558ONH.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF303ULN bigWig fold change over control ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF245TKJ, ENCFF937EBV 867194178 ENCODE Processing Pipeline 36e2eabc7a330100ae3be1b9ca8e8442 https://www.encodeproject.org/files/ENCFF303ULN/@@download/ENCFF303ULN.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF866EAU bigBed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF558ONH 11679463 ENCODE Processing Pipeline 36f814b71096c3c3b99e4c9c01efac72 https://www.encodeproject.org/files/ENCFF866EAU/@@download/ENCFF866EAU.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF545VLD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF571PCW 947580 ENCODE Processing Pipeline 50f2ba06cbbc902b8f6c75b77a95a863 https://www.encodeproject.org/files/ENCFF545VLD/@@download/ENCFF545VLD.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF382FXA bed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF742BWH, ENCFF742DCE 5359676 ENCODE Processing Pipeline 79b022c8297a5a7a18e64b4da929eef2 https://www.encodeproject.org/files/ENCFF382FXA/@@download/ENCFF382FXA.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF595YHG bigBed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF382FXA 11717114 ENCODE Processing Pipeline 88c3c8a4f06007fe71b2424505cabd27 https://www.encodeproject.org/files/ENCFF595YHG/@@download/ENCFF595YHG.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF274KQP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF363MAG 953137 ENCODE Processing Pipeline 8b897e87cbd33cd84adfa3aec347839b https://www.encodeproject.org/files/ENCFF274KQP/@@download/ENCFF274KQP.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF005EKN fastq reads ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF267OTO 3195893212 Michael Snyder, Stanford 703dce0fb4d51751e4b0e6bf91470f25 SRA:SRR6212920 https://www.encodeproject.org/files/ENCFF005EKN/@@download/ENCFF005EKN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF267OTO fastq reads ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF005EKN 3112937853 Michael Snyder, Stanford 556f6784ed1f2608ef9ede859a38a6b4 SRA:SRR6212920 https://www.encodeproject.org/files/ENCFF267OTO/@@download/ENCFF267OTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF364YNQ fastq reads ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF060CVH 3566626142 Michael Snyder, Stanford 60ed4639bc39d327c69691226bdb4fb5 SRA:SRR6212921 https://www.encodeproject.org/files/ENCFF364YNQ/@@download/ENCFF364YNQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF060CVH fastq reads ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF364YNQ 3651235962 Michael Snyder, Stanford 9cab206dea7eba9b0967e3fd79ba69fc SRA:SRR6212921 https://www.encodeproject.org/files/ENCFF060CVH/@@download/ENCFF060CVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF805RLH bam unfiltered alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF005EKN, ENCFF267OTO, ENCFF643CGH 6415769073 ENCODE Processing Pipeline fbf07a0b4caad902d9319666e6a3d64f https://www.encodeproject.org/files/ENCFF805RLH/@@download/ENCFF805RLH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF607DUB bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF005EKN, ENCFF267OTO, ENCFF643CGH 5160850416 ENCODE Processing Pipeline e18d122a1cb8bb25732526497c35e661 https://www.encodeproject.org/files/ENCFF607DUB/@@download/ENCFF607DUB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF341TEO bam unfiltered alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF005EKN, ENCFF267OTO, ENCFF807MUK 6407787258 ENCODE Processing Pipeline 940ce5d6171f8284c27a8a9be79f5ea6 https://www.encodeproject.org/files/ENCFF341TEO/@@download/ENCFF341TEO.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF781CQH bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF005EKN, ENCFF267OTO, ENCFF807MUK 5157733542 ENCODE Processing Pipeline 066eec71508354a07cbfcb05ec6147ac https://www.encodeproject.org/files/ENCFF781CQH/@@download/ENCFF781CQH.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF541ZOR bam unfiltered alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF060CVH, ENCFF364YNQ, ENCFF807MUK 7297189645 ENCODE Processing Pipeline f232238c0e6c55a7005bd45993364a17 https://www.encodeproject.org/files/ENCFF541ZOR/@@download/ENCFF541ZOR.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF048LDJ bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF060CVH, ENCFF364YNQ, ENCFF807MUK 6007021067 ENCODE Processing Pipeline 9570226528e2f6d5de8b610c50060e8c https://www.encodeproject.org/files/ENCFF048LDJ/@@download/ENCFF048LDJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF107RYM bam unfiltered alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF060CVH, ENCFF364YNQ, ENCFF643CGH 7307754947 ENCODE Processing Pipeline 750bb06a6c8da7211d142746b00881bb https://www.encodeproject.org/files/ENCFF107RYM/@@download/ENCFF107RYM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF230WSL bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF060CVH, ENCFF364YNQ, ENCFF643CGH 6011536440 ENCODE Processing Pipeline 4e4e9f9c4a79c4874ca7f4a5d67c2a95 https://www.encodeproject.org/files/ENCFF230WSL/@@download/ENCFF230WSL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF695WMM bigWig signal p-value ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF048LDJ 1487585086 ENCODE Processing Pipeline dbe6c7bc0981c030d22a9cf8057da7f9 https://www.encodeproject.org/files/ENCFF695WMM/@@download/ENCFF695WMM.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF938KVL bigWig signal p-value ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF781CQH 1433849819 ENCODE Processing Pipeline 4af0372ff6ec6114a58c3f4d4b5679a3 https://www.encodeproject.org/files/ENCFF938KVL/@@download/ENCFF938KVL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF061NQO bigWig signal p-value ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF048LDJ, ENCFF781CQH 1980120808 ENCODE Processing Pipeline 342bfe778c44ff33ad3f1773fae0053d https://www.encodeproject.org/files/ENCFF061NQO/@@download/ENCFF061NQO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF618CCQ bigWig fold change over control ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF781CQH 1438322609 ENCODE Processing Pipeline e6dcf45a5ead64da47bbb1825a4910a9 https://www.encodeproject.org/files/ENCFF618CCQ/@@download/ENCFF618CCQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF436YZZ bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF781CQH 6535730 ENCODE Processing Pipeline 33179ca061d8479c9a5ffe0c69dd4183 https://www.encodeproject.org/files/ENCFF436YZZ/@@download/ENCFF436YZZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF749HHU bigWig fold change over control ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF048LDJ 1569857734 ENCODE Processing Pipeline 08cc29af66ef19c795c2d15bb939bf92 https://www.encodeproject.org/files/ENCFF749HHU/@@download/ENCFF749HHU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF283FPP bigWig fold change over control ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF048LDJ, ENCFF781CQH 2096909382 ENCODE Processing Pipeline 9a8c92d460eaac1144e01f2e5a8344e8 https://www.encodeproject.org/files/ENCFF283FPP/@@download/ENCFF283FPP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF541ROJ bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF048LDJ, ENCFF781CQH 7192943 ENCODE Processing Pipeline 299aae06a666bbeaf9aedec80fdde888 https://www.encodeproject.org/files/ENCFF541ROJ/@@download/ENCFF541ROJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF027RLD bed narrowPeak conservative idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF436YZZ, ENCFF454YEP, ENCFF541ROJ 21885 ENCODE Processing Pipeline e6bdd9c7a4e67e47552c2cbd8b8174a0 https://www.encodeproject.org/files/ENCFF027RLD/@@download/ENCFF027RLD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF924LQU bigBed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF436YZZ 11264674 ENCODE Processing Pipeline cc8e78efffb0b2dc74c6ef2ca5fe4999 https://www.encodeproject.org/files/ENCFF924LQU/@@download/ENCFF924LQU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF907ZHL bigBed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF454YEP 11180764 ENCODE Processing Pipeline 09235bd66b00727f7731928f42ba7d3d https://www.encodeproject.org/files/ENCFF907ZHL/@@download/ENCFF907ZHL.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF245YWU bigBed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF541ROJ 11038972 ENCODE Processing Pipeline afea1496f604402e40f1f2d03861175f https://www.encodeproject.org/files/ENCFF245YWU/@@download/ENCFF245YWU.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF454YEP bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF048LDJ 6575497 ENCODE Processing Pipeline 5a3e5465632961d6c957d0cfd30b3c73 https://www.encodeproject.org/files/ENCFF454YEP/@@download/ENCFF454YEP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF265HWY bed narrowPeak optimal idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF436YZZ, ENCFF454YEP, ENCFF541ROJ 45886 ENCODE Processing Pipeline 1747130c7d70af102753a38155223689 https://www.encodeproject.org/files/ENCFF265HWY/@@download/ENCFF265HWY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF297VSS bigBed narrowPeak conservative idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF027RLD 100502 ENCODE Processing Pipeline 558ec30292339265cfb1bdde2358d242 https://www.encodeproject.org/files/ENCFF297VSS/@@download/ENCFF297VSS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF128MHV bigBed narrowPeak optimal idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF265HWY 145959 ENCODE Processing Pipeline be434f6405e45fd08116b0c1727d3b06 https://www.encodeproject.org/files/ENCFF128MHV/@@download/ENCFF128MHV.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF943SUT bigWig signal p-value ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF607DUB 1468969703 ENCODE Processing Pipeline bb89e802ddcf8ec7e13c0457ba1ea449 https://www.encodeproject.org/files/ENCFF943SUT/@@download/ENCFF943SUT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF935JFJ bigWig signal p-value ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF230WSL 1368443695 ENCODE Processing Pipeline 8eef6e94d3fa46b149c971b898330a6b https://www.encodeproject.org/files/ENCFF935JFJ/@@download/ENCFF935JFJ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF854CMM bigWig signal p-value ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF230WSL, ENCFF607DUB 1952237615 ENCODE Processing Pipeline b4ef87a4dc053821d9e7a5a61178966d https://www.encodeproject.org/files/ENCFF854CMM/@@download/ENCFF854CMM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF877QZW bigWig fold change over control ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF607DUB 1446016364 ENCODE Processing Pipeline 4b2391b32d2100457ed965d68dc8f2b2 https://www.encodeproject.org/files/ENCFF877QZW/@@download/ENCFF877QZW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF626XHP bigWig fold change over control ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF230WSL 1572012491 ENCODE Processing Pipeline 86b32b702e8b762d55235597b98f077d https://www.encodeproject.org/files/ENCFF626XHP/@@download/ENCFF626XHP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF619FLZ bigWig fold change over control ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF230WSL, ENCFF607DUB 2066525243 ENCODE Processing Pipeline c90f1b14241c120f95ba2e55fe78d153 https://www.encodeproject.org/files/ENCFF619FLZ/@@download/ENCFF619FLZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF704WQY bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF607DUB 6538171 ENCODE Processing Pipeline e2eb423de8c1a860f94a8cfc9dac2f4c https://www.encodeproject.org/files/ENCFF704WQY/@@download/ENCFF704WQY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF364AFV bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF230WSL 6580326 ENCODE Processing Pipeline a6dcbf23625a33424af51b31b1abcc65 https://www.encodeproject.org/files/ENCFF364AFV/@@download/ENCFF364AFV.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF908LRT bigBed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF704WQY 11277174 ENCODE Processing Pipeline 82a39248b46a0986f7adbd80fa42260a https://www.encodeproject.org/files/ENCFF908LRT/@@download/ENCFF908LRT.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF153APF bigBed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF364AFV 11194644 ENCODE Processing Pipeline 7e2f14b36bb3329f383ed0f857142c41 https://www.encodeproject.org/files/ENCFF153APF/@@download/ENCFF153APF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF757PZI bigBed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF068OEC 11080583 ENCODE Processing Pipeline efc06d56a11de3d958ae0b8a05009b6b https://www.encodeproject.org/files/ENCFF757PZI/@@download/ENCFF757PZI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF738GMP bed narrowPeak conservative idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF068OEC, ENCFF364AFV, ENCFF419RSJ, ENCFF704WQY 22673 ENCODE Processing Pipeline 45bc739f5eefeed7e2665d269732ae3c https://www.encodeproject.org/files/ENCFF738GMP/@@download/ENCFF738GMP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF068OEC bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF230WSL, ENCFF607DUB 7199319 ENCODE Processing Pipeline f93836c8a08c1fca829f87c58c526972 https://www.encodeproject.org/files/ENCFF068OEC/@@download/ENCFF068OEC.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF496RBJ bed narrowPeak optimal idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF068OEC, ENCFF364AFV, ENCFF419RSJ, ENCFF704WQY 47727 ENCODE Processing Pipeline a36c9d7f73d4f97cd285ac0182ae2df2 https://www.encodeproject.org/files/ENCFF496RBJ/@@download/ENCFF496RBJ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF936OTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF496RBJ 150668 ENCODE Processing Pipeline ee0c6cca42068b1a709f7a24bdabc92b https://www.encodeproject.org/files/ENCFF936OTQ/@@download/ENCFF936OTQ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF137JAY bigBed narrowPeak conservative idr thresholded peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF738GMP 103328 ENCODE Processing Pipeline 1de3cfaa7e777d7503026fcee84da5a3 https://www.encodeproject.org/files/ENCFF137JAY/@@download/ENCFF137JAY.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF112XWZ fastq reads ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF421MDM 3409338122 Michael Snyder, Stanford f228f90e16514cb768b44542c823bf53 SRA:SRR5111508 https://www.encodeproject.org/files/ENCFF112XWZ/@@download/ENCFF112XWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF724ABX fastq reads ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF150IYM 2480428099 Michael Snyder, Stanford 4deea8280a38f8844a85fe0dba8b52b5 SRA:SRR5111509 https://www.encodeproject.org/files/ENCFF724ABX/@@download/ENCFF724ABX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF150IYM fastq reads ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF724ABX 2510309637 Michael Snyder, Stanford 39946c5a8681791a7bf74b2db2354c97 SRA:SRR5111509 https://www.encodeproject.org/files/ENCFF150IYM/@@download/ENCFF150IYM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF421MDM fastq reads ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF112XWZ 3488302208 Michael Snyder, Stanford 4c9ffb7739aeaf459a71a3ceea0758dc SRA:SRR5111508 https://www.encodeproject.org/files/ENCFF421MDM/@@download/ENCFF421MDM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF936DZL bam unfiltered alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF150IYM, ENCFF643CGH, ENCFF724ABX 5543180893 ENCODE Processing Pipeline 5b9cbac2a96d53ded9badc167ba94dee https://www.encodeproject.org/files/ENCFF936DZL/@@download/ENCFF936DZL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF292ZQD bam unfiltered alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF150IYM, ENCFF724ABX, ENCFF807MUK 5536960352 ENCODE Processing Pipeline 25f5707033678fdbe3c6b2634ddbee93 https://www.encodeproject.org/files/ENCFF292ZQD/@@download/ENCFF292ZQD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF918FFD bam unfiltered alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF112XWZ, ENCFF421MDM, ENCFF807MUK 7507113104 ENCODE Processing Pipeline f47dd669e531b027e0707d93f3b5b67a https://www.encodeproject.org/files/ENCFF918FFD/@@download/ENCFF918FFD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF749EZZ bam unfiltered alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF112XWZ, ENCFF421MDM, ENCFF643CGH 7516002758 ENCODE Processing Pipeline 6bdbb845f8c661ad6c18c6652158105c https://www.encodeproject.org/files/ENCFF749EZZ/@@download/ENCFF749EZZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF438VAZ bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF150IYM, ENCFF724ABX, ENCFF807MUK 4652060372 ENCODE Processing Pipeline f31ac1a1884a5d21e613e81010face0d https://www.encodeproject.org/files/ENCFF438VAZ/@@download/ENCFF438VAZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF823KOR bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF150IYM, ENCFF643CGH, ENCFF724ABX 4654674505 ENCODE Processing Pipeline e12f31085666dbeb260da3f5e934131c https://www.encodeproject.org/files/ENCFF823KOR/@@download/ENCFF823KOR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF399JID bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF112XWZ, ENCFF421MDM, ENCFF807MUK 6327313768 ENCODE Processing Pipeline b55f081ee4ff0c2d6f1c09148227ca0f https://www.encodeproject.org/files/ENCFF399JID/@@download/ENCFF399JID.bam hg19 released missing genetic modification characterization missing control alignments ENCFF347HLU bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF112XWZ, ENCFF421MDM, ENCFF643CGH 6331246358 ENCODE Processing Pipeline 9dd937c27cc0eb5007d329e13934e406 https://www.encodeproject.org/files/ENCFF347HLU/@@download/ENCFF347HLU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF501ETI bigWig signal p-value ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF438VAZ 1170064732 ENCODE Processing Pipeline 14f14bbd97d0e2f4ac0c7aa5efa174cc https://www.encodeproject.org/files/ENCFF501ETI/@@download/ENCFF501ETI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF813HPS bigWig signal p-value ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF399JID 1527627564 ENCODE Processing Pipeline 96150ccd2e604049dbec15e6a08d1602 https://www.encodeproject.org/files/ENCFF813HPS/@@download/ENCFF813HPS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF907NMW bigWig signal p-value ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF399JID, ENCFF438VAZ 1951182236 ENCODE Processing Pipeline f588c95ebd0eb036fc1347578dfb8f98 https://www.encodeproject.org/files/ENCFF907NMW/@@download/ENCFF907NMW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF490RLG bigWig fold change over control ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF438VAZ 1389696315 ENCODE Processing Pipeline a072c6ca91dbfedc5a205c614e98089e https://www.encodeproject.org/files/ENCFF490RLG/@@download/ENCFF490RLG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF580WXY bigWig fold change over control ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF399JID 1649563699 ENCODE Processing Pipeline 7c7d17eccf2efd1a278d3da96d90514c https://www.encodeproject.org/files/ENCFF580WXY/@@download/ENCFF580WXY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF733TSP bigWig fold change over control ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF399JID, ENCFF438VAZ 2080325539 ENCODE Processing Pipeline 27a01390c79dd162dff1ac435aa9395f https://www.encodeproject.org/files/ENCFF733TSP/@@download/ENCFF733TSP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF915QWH bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF438VAZ 6798437 ENCODE Processing Pipeline c6237a88719dfb367ac219465d6e5ad8 https://www.encodeproject.org/files/ENCFF915QWH/@@download/ENCFF915QWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF092PBW bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF399JID 6988574 ENCODE Processing Pipeline 597c0fa15c0984c5dfd3ffd2c291a403 https://www.encodeproject.org/files/ENCFF092PBW/@@download/ENCFF092PBW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF118XAI bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF399JID, ENCFF438VAZ 7232916 ENCODE Processing Pipeline beee4c24447758b62b87d10241ca6731 https://www.encodeproject.org/files/ENCFF118XAI/@@download/ENCFF118XAI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF285DEY bigBed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF915QWH 13440773 ENCODE Processing Pipeline 62ee350100767e9c9ec1ebebdd150791 https://www.encodeproject.org/files/ENCFF285DEY/@@download/ENCFF285DEY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF600OBY bigBed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF092PBW 13370046 ENCODE Processing Pipeline 6be94a371947c47129272d8892ae8c8b https://www.encodeproject.org/files/ENCFF600OBY/@@download/ENCFF600OBY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF794NIT bigBed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF118XAI 13246814 ENCODE Processing Pipeline 95648b53248fcc0d4047363cfff3821f https://www.encodeproject.org/files/ENCFF794NIT/@@download/ENCFF794NIT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF529VEW bed narrowPeak conservative idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF092PBW, ENCFF118XAI, ENCFF915QWH 271871 ENCODE Processing Pipeline a47bfe4e4fb8dc76729e48099433ad2a https://www.encodeproject.org/files/ENCFF529VEW/@@download/ENCFF529VEW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF681HGV bigBed narrowPeak conservative idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF529VEW 505535 ENCODE Processing Pipeline 1ac51f0c15d988f0f401f1885e96747a https://www.encodeproject.org/files/ENCFF681HGV/@@download/ENCFF681HGV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF201GAD bed narrowPeak optimal idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF092PBW, ENCFF118XAI, ENCFF915QWH 324687 ENCODE Processing Pipeline 27bc97970bb8935cd06aaab50d426d1b https://www.encodeproject.org/files/ENCFF201GAD/@@download/ENCFF201GAD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF577UWG bigBed narrowPeak optimal idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF201GAD 699618 ENCODE Processing Pipeline 72282ce2029226a931f28441b4cd38c1 https://www.encodeproject.org/files/ENCFF577UWG/@@download/ENCFF577UWG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF510ZNX bigWig signal p-value ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF347HLU 1287111849 ENCODE Processing Pipeline 436f68f5de09745b3c8965117f96a6c8 https://www.encodeproject.org/files/ENCFF510ZNX/@@download/ENCFF510ZNX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF918TMJ bigWig signal p-value ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF823KOR 1220296725 ENCODE Processing Pipeline e08430d2d55f6bf0c36ad5ce85ac3bfc https://www.encodeproject.org/files/ENCFF918TMJ/@@download/ENCFF918TMJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF647FRJ bigWig signal p-value ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF347HLU, ENCFF823KOR 1952685799 ENCODE Processing Pipeline 06044af1e80efa90fddf62c6f5988a85 https://www.encodeproject.org/files/ENCFF647FRJ/@@download/ENCFF647FRJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF797WLF bigWig fold change over control ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF347HLU 1621598620 ENCODE Processing Pipeline b75bdc6e4a2a4d816c25a44637e3ce80 https://www.encodeproject.org/files/ENCFF797WLF/@@download/ENCFF797WLF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF209HBV bigWig fold change over control ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF823KOR 1382865361 ENCODE Processing Pipeline 0c0a59f79791cba4599db93b4caacf77 https://www.encodeproject.org/files/ENCFF209HBV/@@download/ENCFF209HBV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF435QQJ bigWig fold change over control ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF347HLU, ENCFF823KOR 2082807011 ENCODE Processing Pipeline 958415cbf32b0806dc121275f4e9b5f6 https://www.encodeproject.org/files/ENCFF435QQJ/@@download/ENCFF435QQJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF987BUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF929SUL 699406 ENCODE Processing Pipeline 8779a563b1394da45d4c842722fd4d8a https://www.encodeproject.org/files/ENCFF987BUQ/@@download/ENCFF987BUQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF278QHV bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF347HLU 6911816 ENCODE Processing Pipeline 12407547166955d6fc10191444d81950 https://www.encodeproject.org/files/ENCFF278QHV/@@download/ENCFF278QHV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF241XAF bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF347HLU, ENCFF823KOR 7223799 ENCODE Processing Pipeline d9ad1ef7b711a534338a2f2b101bd3a3 https://www.encodeproject.org/files/ENCFF241XAF/@@download/ENCFF241XAF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF169TAZ bigBed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF278QHV 13384918 ENCODE Processing Pipeline d1b355d32fb0176ea2fd7aa42022a397 https://www.encodeproject.org/files/ENCFF169TAZ/@@download/ENCFF169TAZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF252YND bigBed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF241XAF 13268213 ENCODE Processing Pipeline bcbb7dc7cf2872c27535a89a2b16fe8c https://www.encodeproject.org/files/ENCFF252YND/@@download/ENCFF252YND.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF502WSB bed narrowPeak conservative idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF241XAF, ENCFF278QHV, ENCFF419RSJ, ENCFF929MZB 270369 ENCODE Processing Pipeline c176c795b0b88310a26945f85c1bb404 https://www.encodeproject.org/files/ENCFF502WSB/@@download/ENCFF502WSB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF929MZB bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF823KOR 6687821 ENCODE Processing Pipeline 98e73153d5a2185c5639ecad5f178485 https://www.encodeproject.org/files/ENCFF929MZB/@@download/ENCFF929MZB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF829PXU bigBed narrowPeak conservative idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF502WSB 608364 ENCODE Processing Pipeline 98b25ea6193798a40bb49094f64639e5 https://www.encodeproject.org/files/ENCFF829PXU/@@download/ENCFF829PXU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF841FMD bigBed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF929MZB 13452912 ENCODE Processing Pipeline 70800b3b1521831087500853660dd893 https://www.encodeproject.org/files/ENCFF841FMD/@@download/ENCFF841FMD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF929SUL bed narrowPeak optimal idr thresholded peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF241XAF, ENCFF278QHV, ENCFF419RSJ, ENCFF929MZB 324454 ENCODE Processing Pipeline deaa886d4a65305cb112c7682cfec705 https://www.encodeproject.org/files/ENCFF929SUL/@@download/ENCFF929SUL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF956FQW fastq reads ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 1 101 paired-ended 2 ENCFF701LQT 2618924987 Michael Snyder, Stanford 64320072242ec221166c5cabcf3fe6ee SRA:SRR6213406 https://www.encodeproject.org/files/ENCFF956FQW/@@download/ENCFF956FQW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF920JRG fastq reads ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 1 101 paired-ended 1 ENCFF128QVX 2432585969 Michael Snyder, Stanford 8c623e098e61df671f6470a6fd682014 SRA:SRR6213405 https://www.encodeproject.org/files/ENCFF920JRG/@@download/ENCFF920JRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF128QVX fastq reads ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 1 101 paired-ended 2 ENCFF920JRG 2518019758 Michael Snyder, Stanford 55ec5eb039804b406da9c0469e2f1bce SRA:SRR6213405 https://www.encodeproject.org/files/ENCFF128QVX/@@download/ENCFF128QVX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF701LQT fastq reads ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 1 101 paired-ended 1 ENCFF956FQW 2529756045 Michael Snyder, Stanford 11cb0502d84eb3006f0ad1bdd4646c09 SRA:SRR6213406 https://www.encodeproject.org/files/ENCFF701LQT/@@download/ENCFF701LQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF263SNQ bam unfiltered alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 101 ENCFF128QVX, ENCFF643CGH, ENCFF920JRG 5360532882 ENCODE Processing Pipeline bdad8a8aea3df404a127194016eb29be https://www.encodeproject.org/files/ENCFF263SNQ/@@download/ENCFF263SNQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF970NDQ bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 101 ENCFF128QVX, ENCFF643CGH, ENCFF920JRG 4448448622 ENCODE Processing Pipeline 8af23b069ead59b8c935d40c0507fa73 https://www.encodeproject.org/files/ENCFF970NDQ/@@download/ENCFF970NDQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF861UKC bam unfiltered alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 101 ENCFF128QVX, ENCFF807MUK, ENCFF920JRG 5356729167 ENCODE Processing Pipeline c169d61cbc6b009ea6249de10ca90ca0 https://www.encodeproject.org/files/ENCFF861UKC/@@download/ENCFF861UKC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF313KHO bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 101 ENCFF128QVX, ENCFF807MUK, ENCFF920JRG 4446687963 ENCODE Processing Pipeline da674c1c0aad51cceef06cf2bb5a67f8 https://www.encodeproject.org/files/ENCFF313KHO/@@download/ENCFF313KHO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF102TMT bigWig fold change over control ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF970NDQ 1409207679 ENCODE Processing Pipeline ddfc114f47f1230ec296e7048e7764cc https://www.encodeproject.org/files/ENCFF102TMT/@@download/ENCFF102TMT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF817QJZ bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF423OJU 7127208 ENCODE Processing Pipeline 12274ebcf5d333b908499c5c3d525296 https://www.encodeproject.org/files/ENCFF817QJZ/@@download/ENCFF817QJZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF550OBL bigBed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF671HGF 13306445 ENCODE Processing Pipeline 5fd8c0c7e0902fb635c5406f1be58346 https://www.encodeproject.org/files/ENCFF550OBL/@@download/ENCFF550OBL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF643LTW bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF313KHO 7065170 ENCODE Processing Pipeline f4246eb26e7878f1bdaf1a757c90b217 https://www.encodeproject.org/files/ENCFF643LTW/@@download/ENCFF643LTW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF494QXP bigBed narrowPeak optimal idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF167ZZY 1465024 ENCODE Processing Pipeline 1cab6879c8f1bb1d75e814d742765116 https://www.encodeproject.org/files/ENCFF494QXP/@@download/ENCFF494QXP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF653IYR bigWig signal p-value ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF809NQI 1317585113 ENCODE Processing Pipeline e9931fa99e51110ad6421f0785507ccf https://www.encodeproject.org/files/ENCFF653IYR/@@download/ENCFF653IYR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF580DVD bigWig signal p-value ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF970NDQ 1174912693 ENCODE Processing Pipeline eee21587159ec455e44f2bd8fc80f618 https://www.encodeproject.org/files/ENCFF580DVD/@@download/ENCFF580DVD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF399ZJY bigWig fold change over control ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF809NQI 1436080904 ENCODE Processing Pipeline b73faed53196503aea30b96006a7ab1f https://www.encodeproject.org/files/ENCFF399ZJY/@@download/ENCFF399ZJY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF628PTF bigWig signal p-value ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF313KHO 1201991773 ENCODE Processing Pipeline 9e04d9676e582995453a7663ad73e487 https://www.encodeproject.org/files/ENCFF628PTF/@@download/ENCFF628PTF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF544AZC bigWig signal p-value ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF423OJU, ENCFF970NDQ 1948936178 ENCODE Processing Pipeline 5f52ff0c071928b6ff9ad9014c7b1ff5 https://www.encodeproject.org/files/ENCFF544AZC/@@download/ENCFF544AZC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF780IEY bigWig signal p-value ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF313KHO, ENCFF809NQI 1958317387 ENCODE Processing Pipeline aaa7fe52400eccae54aa1820306d8e24 https://www.encodeproject.org/files/ENCFF780IEY/@@download/ENCFF780IEY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF461HLE bigWig fold change over control ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF313KHO 1426014903 ENCODE Processing Pipeline 511fa9e37c441815270bf8f06f9e242d https://www.encodeproject.org/files/ENCFF461HLE/@@download/ENCFF461HLE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF708EYJ bigWig fold change over control ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF423OJU, ENCFF970NDQ 1982968313 ENCODE Processing Pipeline d6fb4878b55d2034474fb327bf39ad63 https://www.encodeproject.org/files/ENCFF708EYJ/@@download/ENCFF708EYJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF671HGF bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF970NDQ 7067681 ENCODE Processing Pipeline 6bd69a2c9c4b1869a9aa175a05099194 https://www.encodeproject.org/files/ENCFF671HGF/@@download/ENCFF671HGF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF738DOC bigWig fold change over control ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF313KHO, ENCFF809NQI 1994469124 ENCODE Processing Pipeline c575eab770c2db5c4bc545e054930ee5 https://www.encodeproject.org/files/ENCFF738DOC/@@download/ENCFF738DOC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF086IJR bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF423OJU, ENCFF970NDQ 7238677 ENCODE Processing Pipeline 30a0a6a7fdd1d7925415b7560847b6a9 https://www.encodeproject.org/files/ENCFF086IJR/@@download/ENCFF086IJR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF545OSF bigBed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF086IJR 13158900 ENCODE Processing Pipeline fc1028893d17a580923c6ba5d5ce2435 https://www.encodeproject.org/files/ENCFF545OSF/@@download/ENCFF545OSF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF883GKG bed narrowPeak conservative idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF086IJR, ENCFF419RSJ, ENCFF671HGF, ENCFF817QJZ 737648 ENCODE Processing Pipeline 5fe8585c1104eb4b352a21037be6a11a https://www.encodeproject.org/files/ENCFF883GKG/@@download/ENCFF883GKG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF801MPP bigBed narrowPeak conservative idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF883GKG 1390919 ENCODE Processing Pipeline 7b9f24572bd3f4d16f03016931dc9ab5 https://www.encodeproject.org/files/ENCFF801MPP/@@download/ENCFF801MPP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF265EFR bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF809NQI 7120663 ENCODE Processing Pipeline ac24d7c0cccf249717b03a66acdf32b9 https://www.encodeproject.org/files/ENCFF265EFR/@@download/ENCFF265EFR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF167ZZY bed narrowPeak optimal idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF086IJR, ENCFF419RSJ, ENCFF671HGF, ENCFF817QJZ 787666 ENCODE Processing Pipeline 0e8f221f6b9abb693ec86f6c74ded793 https://www.encodeproject.org/files/ENCFF167ZZY/@@download/ENCFF167ZZY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF331WRD bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF313KHO, ENCFF809NQI 7240348 ENCODE Processing Pipeline 8706be28727691c82f59409c24774e52 https://www.encodeproject.org/files/ENCFF331WRD/@@download/ENCFF331WRD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF145HHI bigBed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF265EFR 13204757 ENCODE Processing Pipeline d0ed79fdda754ff4e62b63f1976c3e74 https://www.encodeproject.org/files/ENCFF145HHI/@@download/ENCFF145HHI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF023LXR bigBed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 ENCFF643LTW 13288192 ENCODE Processing Pipeline 172c3e926bf0c8309d8802ad5cff3dbb https://www.encodeproject.org/files/ENCFF023LXR/@@download/ENCFF023LXR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF234WBT bed narrowPeak optimal idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF001TDO, ENCFF265EFR, ENCFF331WRD, ENCFF643LTW 778802 ENCODE Processing Pipeline 33a194f80f6e579ee22e3af25ba926d8 https://www.encodeproject.org/files/ENCFF234WBT/@@download/ENCFF234WBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF769FIH bigBed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF331WRD 13145102 ENCODE Processing Pipeline 8e7360b465bd41cc1577fdec93113d72 https://www.encodeproject.org/files/ENCFF769FIH/@@download/ENCFF769FIH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF081PQX bed narrowPeak conservative idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF001TDO, ENCFF265EFR, ENCFF331WRD, ENCFF643LTW 736765 ENCODE Processing Pipeline 3c8687207a7b2f6ef87033a5b36e515c https://www.encodeproject.org/files/ENCFF081PQX/@@download/ENCFF081PQX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF035SZH bigBed narrowPeak conservative idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF081PQX 1388235 ENCODE Processing Pipeline cd7d6f1186b1c53b1464a8c5875470ed https://www.encodeproject.org/files/ENCFF035SZH/@@download/ENCFF035SZH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF580BVR bigBed narrowPeak optimal idr thresholded peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2, 3 ENCFF234WBT 1450581 ENCODE Processing Pipeline ce23b4222f074b3957c17b8fe1b004b1 https://www.encodeproject.org/files/ENCFF580BVR/@@download/ENCFF580BVR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF809NQI bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 101 ENCFF701LQT, ENCFF807MUK, ENCFF956FQW 4700025326 ENCODE Processing Pipeline a80a57192346040eff23b48572fede5e https://www.encodeproject.org/files/ENCFF809NQI/@@download/ENCFF809NQI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF923YDA bam unfiltered alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 101 ENCFF701LQT, ENCFF807MUK, ENCFF956FQW 5571741056 ENCODE Processing Pipeline 2c54a81ccc313c555882ec5b2bc37edb https://www.encodeproject.org/files/ENCFF923YDA/@@download/ENCFF923YDA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF423OJU bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 101 ENCFF643CGH, ENCFF701LQT, ENCFF956FQW 4702222000 ENCODE Processing Pipeline 5c7a96aff924b90ec0fdaed1cc33436b https://www.encodeproject.org/files/ENCFF423OJU/@@download/ENCFF423OJU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF986IPG bam unfiltered alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 101 ENCFF643CGH, ENCFF701LQT, ENCFF956FQW 5575989417 ENCODE Processing Pipeline 6c8e74446e8bf9f7f1bba16c1be83b42 https://www.encodeproject.org/files/ENCFF986IPG/@@download/ENCFF986IPG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF467EYZ bigWig signal p-value ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF423OJU 1408514739 ENCODE Processing Pipeline e7e61bc5a40f802555c8fc76f702c715 https://www.encodeproject.org/files/ENCFF467EYZ/@@download/ENCFF467EYZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF221HNC bigWig fold change over control ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF423OJU 1426794102 ENCODE Processing Pipeline d8ab3eb477533dc189f65693294e6321 https://www.encodeproject.org/files/ENCFF221HNC/@@download/ENCFF221HNC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF641EAP bigBed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF817QJZ 13222707 ENCODE Processing Pipeline 17145b84d8684f721cfac120fd63f799 https://www.encodeproject.org/files/ENCFF641EAP/@@download/ENCFF641EAP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF778LRO fastq reads ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF858IOX 2143149490 Michael Snyder, Stanford ec13624bf036678330d0a07013dc2e0f SRA:SRR6213562 https://www.encodeproject.org/files/ENCFF778LRO/@@download/ENCFF778LRO.fastq.gz Illumina HiSeq 4000 /files/ENCFF184KAN/ released antibody characterized with exemption ENCFF858IOX fastq reads ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF778LRO 2274372631 Michael Snyder, Stanford a04f191b60a86bed596a86f239f24558 SRA:SRR6213562 https://www.encodeproject.org/files/ENCFF858IOX/@@download/ENCFF858IOX.fastq.gz Illumina HiSeq 4000 /files/ENCFF535EZI/ released antibody characterized with exemption ENCFF319SAQ bam alignments ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF778LRO, ENCFF858IOX 3501238128 ENCODE Processing Pipeline ebe198bf85973b9d9418b48d64b27ee6 https://www.encodeproject.org/files/ENCFF319SAQ/@@download/ENCFF319SAQ.bam GRCh38 released antibody characterized with exemption ENCFF456GLK bam unfiltered alignments ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF778LRO, ENCFF858IOX 4231170515 ENCODE Processing Pipeline e89d0753ccec2bf7b01dd8ba9474f7a9 https://www.encodeproject.org/files/ENCFF456GLK/@@download/ENCFF456GLK.bam GRCh38 released antibody characterized with exemption ENCFF555CXI bam alignments ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF778LRO, ENCFF807MUK, ENCFF858IOX 3499732595 ENCODE Processing Pipeline 6bb95cde992f5983aea398fd9d58dea6 https://www.encodeproject.org/files/ENCFF555CXI/@@download/ENCFF555CXI.bam hg19 released antibody characterized with exemption ENCFF702UAO bam unfiltered alignments ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF778LRO, ENCFF807MUK, ENCFF858IOX 4226775720 ENCODE Processing Pipeline 8d7bac272e32cc6af32e54cf65c06ba3 https://www.encodeproject.org/files/ENCFF702UAO/@@download/ENCFF702UAO.bam hg19 released antibody characterized with exemption ENCFF436SWA bigWig signal p-value ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF055UXI, ENCFF555CXI 1009860384 ENCODE Processing Pipeline 0fd7129ee3614aa98252e8eb3f5fc490 https://www.encodeproject.org/files/ENCFF436SWA/@@download/ENCFF436SWA.bigWig hg19 released antibody characterized with exemption ENCFF385IIG bigWig fold change over control ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF055UXI, ENCFF555CXI 1024588546 ENCODE Processing Pipeline 4a6e52095ec6eaa0ae71d150451051b7 https://www.encodeproject.org/files/ENCFF385IIG/@@download/ENCFF385IIG.bigWig hg19 released antibody characterized with exemption ENCFF696JKX bed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF055UXI, ENCFF555CXI 6384873 ENCODE Processing Pipeline 8604eaccdc097ac0640b35650ba24f0e https://www.encodeproject.org/files/ENCFF696JKX/@@download/ENCFF696JKX.bed.gz hg19 released antibody characterized with exemption ENCFF661NEO bigWig signal p-value ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF084AUO, ENCFF319SAQ 1014626214 ENCODE Processing Pipeline 370b5cf621ecfbb9f742edb41613e90d https://www.encodeproject.org/files/ENCFF661NEO/@@download/ENCFF661NEO.bigWig GRCh38 released antibody characterized with exemption ENCFF979TJN bed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF084AUO, ENCFF319SAQ 6378450 ENCODE Processing Pipeline 22ed4818551fb574108893f6b84bad27 https://www.encodeproject.org/files/ENCFF979TJN/@@download/ENCFF979TJN.bed.gz GRCh38 released antibody characterized with exemption ENCFF155KVT bigBed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF696JKX 14058195 ENCODE Processing Pipeline ba098dfcf03c19d1e6ed98c3e34c3bfa https://www.encodeproject.org/files/ENCFF155KVT/@@download/ENCFF155KVT.bigBed hg19 released antibody characterized with exemption ENCFF414ZTT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF696JKX 835585 ENCODE Processing Pipeline 984d87cb893651ae91fbcb4117a4179f https://www.encodeproject.org/files/ENCFF414ZTT/@@download/ENCFF414ZTT.bed.gz hg19 released antibody characterized with exemption ENCFF747PAI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF414ZTT 1389206 ENCODE Processing Pipeline 25b4dbdfa1547f65e80cbd08fe105808 https://www.encodeproject.org/files/ENCFF747PAI/@@download/ENCFF747PAI.bigBed hg19 released antibody characterized with exemption ENCFF018VYW bigWig fold change over control ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF084AUO, ENCFF319SAQ 1034139968 ENCODE Processing Pipeline eec1fe33bf701a9e62a69f7cfe8c844c https://www.encodeproject.org/files/ENCFF018VYW/@@download/ENCFF018VYW.bigWig GRCh38 released antibody characterized with exemption ENCFF915HTJ bigBed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF979TJN 14059795 ENCODE Processing Pipeline db74ebd9893af8a165e14c895d5c8141 https://www.encodeproject.org/files/ENCFF915HTJ/@@download/ENCFF915HTJ.bigBed GRCh38 released antibody characterized with exemption ENCFF579XTC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF979TJN 830643 ENCODE Processing Pipeline f2aa142ab3dee5b3aef1d71938a7d590 https://www.encodeproject.org/files/ENCFF579XTC/@@download/ENCFF579XTC.bed.gz GRCh38 released antibody characterized with exemption ENCFF415AST bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF579XTC 1384269 ENCODE Processing Pipeline f871c32d71ec7502a4e9b0f58e2d35d0 https://www.encodeproject.org/files/ENCFF415AST/@@download/ENCFF415AST.bigBed GRCh38 released antibody characterized with exemption ENCFF622YPS fastq reads ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 1 100 paired-ended 1 ENCFF859WEK 8492721508 Michael Snyder, Stanford 375d4a67ce5f124095efbaea79a309b7 https://www.encodeproject.org/files/ENCFF622YPS/@@download/ENCFF622YPS.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released experiment not submitted to GEO ENCFF859WEK fastq reads ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 1 100 paired-ended 2 ENCFF622YPS 8789648416 Michael Snyder, Stanford 6c026afd50e10a4ce4d099df6fd434b5 https://www.encodeproject.org/files/ENCFF859WEK/@@download/ENCFF859WEK.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released experiment not submitted to GEO ENCFF806VEG bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 100 ENCFF622YPS, ENCFF807MUK, ENCFF859WEK 11928896802 ENCODE Processing Pipeline f9331c12559811dfba25b42fa51087ee https://www.encodeproject.org/files/ENCFF806VEG/@@download/ENCFF806VEG.bam hg19 released experiment not submitted to GEO ENCFF598ATG bam unfiltered alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 100 ENCFF622YPS, ENCFF807MUK, ENCFF859WEK 15134172602 ENCODE Processing Pipeline f50d597c00c76f2c277d80ceb703164a https://www.encodeproject.org/files/ENCFF598ATG/@@download/ENCFF598ATG.bam hg19 released experiment not submitted to GEO ENCFF687AXX bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 100 ENCFF622YPS, ENCFF643CGH, ENCFF859WEK 11966998215 ENCODE Processing Pipeline e464eaef9f2e65b0d496defa78734e05 https://www.encodeproject.org/files/ENCFF687AXX/@@download/ENCFF687AXX.bam GRCh38 released experiment not submitted to GEO ENCFF599ACZ bam unfiltered alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 100 ENCFF622YPS, ENCFF643CGH, ENCFF859WEK 15151138432 ENCODE Processing Pipeline 437a2be549d2cdf2cd797623ec99c5ec https://www.encodeproject.org/files/ENCFF599ACZ/@@download/ENCFF599ACZ.bam GRCh38 released experiment not submitted to GEO ENCFF455MYD bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF687AXX 4184806779 ENCODE Processing Pipeline 34827a7df412c498b48ee446af2322e2 https://www.encodeproject.org/files/ENCFF455MYD/@@download/ENCFF455MYD.bigWig GRCh38 released experiment not submitted to GEO ENCFF387OZD bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF687AXX 4405464202 ENCODE Processing Pipeline 65e51b9e67368c81b7f7d17c72be2ccb https://www.encodeproject.org/files/ENCFF387OZD/@@download/ENCFF387OZD.bigWig GRCh38 released experiment not submitted to GEO ENCFF244ZNM bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF791WOZ 11254032 ENCODE Processing Pipeline d0bdb7943a3c0a050405b0412f804d53 https://www.encodeproject.org/files/ENCFF244ZNM/@@download/ENCFF244ZNM.bigBed GRCh38 released experiment not submitted to GEO ENCFF791WOZ bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF687AXX 7274360 ENCODE Processing Pipeline aa9c1a9239c2011f8ce80ca085839874 https://www.encodeproject.org/files/ENCFF791WOZ/@@download/ENCFF791WOZ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF901UJY fastq reads ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 1 101 paired-ended 1 ENCFF959PBM 2647321941 Michael Snyder, Stanford 0b89affadcff1f0c1fbe768441e67673 https://www.encodeproject.org/files/ENCFF901UJY/@@download/ENCFF901UJY.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released experiment not submitted to GEO ENCFF959PBM fastq reads ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 1 101 paired-ended 2 ENCFF901UJY 3215717646 Michael Snyder, Stanford 0a22f34e96ca9c4f495003087dde8691 https://www.encodeproject.org/files/ENCFF959PBM/@@download/ENCFF959PBM.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released experiment not submitted to GEO ENCFF059LJH bam unfiltered alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 101 ENCFF807MUK, ENCFF901UJY, ENCFF959PBM 5764713061 ENCODE Processing Pipeline 3d45d6c1eaa05e96c7f754d31b311973 https://www.encodeproject.org/files/ENCFF059LJH/@@download/ENCFF059LJH.bam hg19 released experiment not submitted to GEO ENCFF833VNH bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 101 ENCFF807MUK, ENCFF901UJY, ENCFF959PBM 4721428009 ENCODE Processing Pipeline 078fa9ead15ee464b7f0447e43e66ab0 https://www.encodeproject.org/files/ENCFF833VNH/@@download/ENCFF833VNH.bam hg19 released experiment not submitted to GEO ENCFF411FZI bam unfiltered alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 101 ENCFF643CGH, ENCFF901UJY, ENCFF959PBM 5778336925 ENCODE Processing Pipeline bc700e95a6e92a42a79ae5ecdd620b7d https://www.encodeproject.org/files/ENCFF411FZI/@@download/ENCFF411FZI.bam GRCh38 released experiment not submitted to GEO ENCFF988SHG bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 101 ENCFF643CGH, ENCFF901UJY, ENCFF959PBM 4729883344 ENCODE Processing Pipeline df72fce926dc3de81527f795cc3ad2e4 https://www.encodeproject.org/files/ENCFF988SHG/@@download/ENCFF988SHG.bam GRCh38 released experiment not submitted to GEO ENCFF686RTN bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF475DWJ, ENCFF621RXC, ENCFF988SHG 1999745836 ENCODE Processing Pipeline b73d58b757ae136b0405f7f5c0906656 https://www.encodeproject.org/files/ENCFF686RTN/@@download/ENCFF686RTN.bigWig GRCh38 released experiment not submitted to GEO ENCFF472RKK bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF475DWJ, ENCFF621RXC, ENCFF988SHG 6785866 ENCODE Processing Pipeline d90f2d013a451f516569bd05f69a4d8c https://www.encodeproject.org/files/ENCFF472RKK/@@download/ENCFF472RKK.bed.gz GRCh38 released experiment not submitted to GEO ENCFF712ATT bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF475DWJ, ENCFF621RXC, ENCFF988SHG 2076706479 ENCODE Processing Pipeline 88f577825d0470e4eb7e9f01d9cb04fc https://www.encodeproject.org/files/ENCFF712ATT/@@download/ENCFF712ATT.bigWig GRCh38 released experiment not submitted to GEO ENCFF228TFS bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF172XZA, ENCFF833VNH, ENCFF843IXX 1925278884 ENCODE Processing Pipeline 56eca1400e059e6565d9306402e1fc52 https://www.encodeproject.org/files/ENCFF228TFS/@@download/ENCFF228TFS.bigWig hg19 released experiment not submitted to GEO ENCFF742QDK bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF472RKK 11489288 ENCODE Processing Pipeline c0d30ca5098fbe6863615fef54ddaa1d https://www.encodeproject.org/files/ENCFF742QDK/@@download/ENCFF742QDK.bigBed GRCh38 released experiment not submitted to GEO ENCFF141ZGT bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF172XZA, ENCFF833VNH, ENCFF843IXX 2050676480 ENCODE Processing Pipeline c2e666473a028a8d7b8e26b5714e8fcb https://www.encodeproject.org/files/ENCFF141ZGT/@@download/ENCFF141ZGT.bigWig hg19 released experiment not submitted to GEO ENCFF005DRM bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF479ZWE 11469788 ENCODE Processing Pipeline 9870294feeffc2a4563c4de3fd9d6db2 https://www.encodeproject.org/files/ENCFF005DRM/@@download/ENCFF005DRM.bigBed hg19 released experiment not submitted to GEO ENCFF479ZWE bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF172XZA, ENCFF833VNH, ENCFF843IXX 6777639 ENCODE Processing Pipeline 97efcd324cb320e3cf60a91f74e37c2d https://www.encodeproject.org/files/ENCFF479ZWE/@@download/ENCFF479ZWE.bed.gz hg19 released experiment not submitted to GEO ENCFF104BVR bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF621RXC, ENCFF687AXX 2057838187 ENCODE Processing Pipeline 77d7815bfac582512b17d1d5a4387f11 https://www.encodeproject.org/files/ENCFF104BVR/@@download/ENCFF104BVR.bigWig GRCh38 released experiment not submitted to GEO ENCFF725VTB bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF621RXC, ENCFF687AXX 2909244609 ENCODE Processing Pipeline 90b511a192a83254352ab2be7da7daed https://www.encodeproject.org/files/ENCFF725VTB/@@download/ENCFF725VTB.bigWig GRCh38 released experiment not submitted to GEO ENCFF395TRT bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF621RXC, ENCFF988SHG 1530919808 ENCODE Processing Pipeline 23ac4094d1c297da357f8abd1a052f36 https://www.encodeproject.org/files/ENCFF395TRT/@@download/ENCFF395TRT.bigWig GRCh38 released experiment not submitted to GEO ENCFF381CAC bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF621RXC, ENCFF687AXX, ENCFF988SHG 1983728411 ENCODE Processing Pipeline f08bc68dba658cb2d52b4b5e30e31751 https://www.encodeproject.org/files/ENCFF381CAC/@@download/ENCFF381CAC.bigWig GRCh38 released experiment not submitted to GEO ENCFF781LDY bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF621RXC, ENCFF988SHG 1663376678 ENCODE Processing Pipeline efda395acd326ba1c1c1ffe0c6ed0989 https://www.encodeproject.org/files/ENCFF781LDY/@@download/ENCFF781LDY.bigWig GRCh38 released experiment not submitted to GEO ENCFF541SRY bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF621RXC, ENCFF687AXX, ENCFF988SHG 4519827702 ENCODE Processing Pipeline f5fe7bf29cfd991421bfb386532acf7d https://www.encodeproject.org/files/ENCFF541SRY/@@download/ENCFF541SRY.bigWig GRCh38 released experiment not submitted to GEO ENCFF039PAX bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF621RXC, ENCFF687AXX 7370294 ENCODE Processing Pipeline d3c183ce9a9d04f1a80e3d0befbf865c https://www.encodeproject.org/files/ENCFF039PAX/@@download/ENCFF039PAX.bed.gz GRCh38 released experiment not submitted to GEO ENCFF161YKO bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF621RXC, ENCFF988SHG 6468312 ENCODE Processing Pipeline 2d8229773dbf9431462be33710be55d8 https://www.encodeproject.org/files/ENCFF161YKO/@@download/ENCFF161YKO.bed.gz GRCh38 released experiment not submitted to GEO ENCFF155XUJ bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF621RXC, ENCFF687AXX, ENCFF988SHG 7243861 ENCODE Processing Pipeline 72e13dc9ca51428e73207b7d4f4ff027 https://www.encodeproject.org/files/ENCFF155XUJ/@@download/ENCFF155XUJ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF554KVK bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF039PAX 11228854 ENCODE Processing Pipeline b5ebe06f97736656822a7a3be3f684c5 https://www.encodeproject.org/files/ENCFF554KVK/@@download/ENCFF554KVK.bigBed GRCh38 released experiment not submitted to GEO ENCFF499TEH bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF161YKO 11424387 ENCODE Processing Pipeline e283b3467a55cef85b75c38427d083a1 https://www.encodeproject.org/files/ENCFF499TEH/@@download/ENCFF499TEH.bigBed GRCh38 released experiment not submitted to GEO ENCFF407ZNH bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF155XUJ 11154735 ENCODE Processing Pipeline a53905be43c7e8d58b9558deb5f38bd0 https://www.encodeproject.org/files/ENCFF407ZNH/@@download/ENCFF407ZNH.bigBed GRCh38 released experiment not submitted to GEO ENCFF721RTR bed narrowPeak conservative idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF039PAX, ENCFF155XUJ, ENCFF161YKO, ENCFF419RSJ 70432 ENCODE Processing Pipeline 12c580abc2adc9061e0e25749b5a0fd6 https://www.encodeproject.org/files/ENCFF721RTR/@@download/ENCFF721RTR.bed.gz GRCh38 released experiment not submitted to GEO ENCFF462BWG bigBed narrowPeak conservative idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF721RTR 197207 ENCODE Processing Pipeline 461ca5b21cb1667b31df6b84254ac21d https://www.encodeproject.org/files/ENCFF462BWG/@@download/ENCFF462BWG.bigBed GRCh38 released experiment not submitted to GEO ENCFF858WPR bed narrowPeak optimal idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF039PAX, ENCFF155XUJ, ENCFF161YKO, ENCFF419RSJ 129151 ENCODE Processing Pipeline 4147289299a069fe6a09bf7fca8c0e70 https://www.encodeproject.org/files/ENCFF858WPR/@@download/ENCFF858WPR.bed.gz GRCh38 released experiment not submitted to GEO ENCFF361LZL bigBed narrowPeak optimal idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF858WPR 289511 ENCODE Processing Pipeline 24ceb2fcdd6e2590066d7948f9172f18 https://www.encodeproject.org/files/ENCFF361LZL/@@download/ENCFF361LZL.bigBed GRCh38 released experiment not submitted to GEO ENCFF866EHL bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF415JVE 11406296 ENCODE Processing Pipeline 1e112c8e09b5e69ec82c0ed018b644aa https://www.encodeproject.org/files/ENCFF866EHL/@@download/ENCFF866EHL.bigBed hg19 released experiment not submitted to GEO ENCFF990DMH bed narrowPeak conservative idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF001TDO, ENCFF106XCP, ENCFF415JVE, ENCFF852WZC 71004 ENCODE Processing Pipeline 7b434404b5f8131c61d305bdbdee0284 https://www.encodeproject.org/files/ENCFF990DMH/@@download/ENCFF990DMH.bed.gz hg19 released experiment not submitted to GEO ENCFF380TOE bigBed narrowPeak conservative idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF990DMH 196534 ENCODE Processing Pipeline a5c8595ab72b9c1bd33f9bd311f5316a https://www.encodeproject.org/files/ENCFF380TOE/@@download/ENCFF380TOE.bigBed hg19 released experiment not submitted to GEO ENCFF204TNV bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF833VNH, ENCFF843IXX 1530458356 ENCODE Processing Pipeline 4af164c1636178f4b449b2887eda5500 https://www.encodeproject.org/files/ENCFF204TNV/@@download/ENCFF204TNV.bigWig hg19 released experiment not submitted to GEO ENCFF213KZP bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF806VEG, ENCFF833VNH, ENCFF843IXX 1966540235 ENCODE Processing Pipeline 75621c48b94d713da613117178749257 https://www.encodeproject.org/files/ENCFF213KZP/@@download/ENCFF213KZP.bigWig hg19 released experiment not submitted to GEO ENCFF106XCP bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF806VEG, ENCFF843IXX 7359580 ENCODE Processing Pipeline 03abac627f5d7e3670e673c5de04311d https://www.encodeproject.org/files/ENCFF106XCP/@@download/ENCFF106XCP.bed.gz hg19 released experiment not submitted to GEO ENCFF415JVE bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF833VNH, ENCFF843IXX 6462659 ENCODE Processing Pipeline 980843bd0abdb25a0fded50ab376fec6 https://www.encodeproject.org/files/ENCFF415JVE/@@download/ENCFF415JVE.bed.gz hg19 released experiment not submitted to GEO ENCFF534BHQ bigBed narrowPeak optimal idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF539NTA 287061 ENCODE Processing Pipeline 231797ee1a25cf19a03073652a42178e https://www.encodeproject.org/files/ENCFF534BHQ/@@download/ENCFF534BHQ.bigBed hg19 released experiment not submitted to GEO ENCFF263NFS bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF806VEG, ENCFF843IXX 2872516840 ENCODE Processing Pipeline 93ea18fe285fcef456bc4aea9509ddac https://www.encodeproject.org/files/ENCFF263NFS/@@download/ENCFF263NFS.bigWig hg19 released experiment not submitted to GEO ENCFF580GNN bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF806VEG, ENCFF833VNH, ENCFF843IXX 4488055864 ENCODE Processing Pipeline ebfd4126b2565b39b486a5959f0a7abe https://www.encodeproject.org/files/ENCFF580GNN/@@download/ENCFF580GNN.bigWig hg19 released experiment not submitted to GEO ENCFF852WZC bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF806VEG, ENCFF833VNH, ENCFF843IXX 7232429 ENCODE Processing Pipeline fbf3fa626787aea1c919f86edddbe63c https://www.encodeproject.org/files/ENCFF852WZC/@@download/ENCFF852WZC.bed.gz hg19 released experiment not submitted to GEO ENCFF299XWG bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF852WZC 11135527 ENCODE Processing Pipeline f320205081cc9557e4c19b5608dea2df https://www.encodeproject.org/files/ENCFF299XWG/@@download/ENCFF299XWG.bigBed hg19 released experiment not submitted to GEO ENCFF539NTA bed narrowPeak optimal idr thresholded peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2, 3 ENCFF001TDO, ENCFF106XCP, ENCFF415JVE, ENCFF852WZC 129205 ENCODE Processing Pipeline bf9b021386c9ca484566857247f651cb https://www.encodeproject.org/files/ENCFF539NTA/@@download/ENCFF539NTA.bed.gz hg19 released experiment not submitted to GEO ENCFF008GHM bigWig signal p-value ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF806VEG, ENCFF843IXX 2031506073 ENCODE Processing Pipeline 61442eb8fa073017db53ff205040dba0 https://www.encodeproject.org/files/ENCFF008GHM/@@download/ENCFF008GHM.bigWig hg19 released experiment not submitted to GEO ENCFF448WLM bigWig fold change over control ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 ENCFF833VNH, ENCFF843IXX 1700343600 ENCODE Processing Pipeline 0f7d94f84707788c525dce72fe512419 https://www.encodeproject.org/files/ENCFF448WLM/@@download/ENCFF448WLM.bigWig hg19 released experiment not submitted to GEO ENCFF708IUP bigBed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF106XCP 11215563 ENCODE Processing Pipeline 6919765fd1ea059f1739204be2e1d0c3 https://www.encodeproject.org/files/ENCFF708IUP/@@download/ENCFF708IUP.bigBed hg19 released experiment not submitted to GEO ENCFF587OVW fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF340SQP 3389939928 Michael Snyder, Stanford 174dbe84a997e3cf69a41fd80067c7ca SRA:SRR6213516 https://www.encodeproject.org/files/ENCFF587OVW/@@download/ENCFF587OVW.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking ENCFF264WMA fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF155GMC 1895006839 Michael Snyder, Stanford 9940e67521ed46c80a5d2f1748f34668 SRA:SRR6213517 https://www.encodeproject.org/files/ENCFF264WMA/@@download/ENCFF264WMA.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking ENCFF155GMC fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF264WMA 2340139486 Michael Snyder, Stanford 4fcf45af80e1f3786aada82f5a2c26c8 SRA:SRR6213517 https://www.encodeproject.org/files/ENCFF155GMC/@@download/ENCFF155GMC.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking ENCFF340SQP fastq reads ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF587OVW 2841718954 Michael Snyder, Stanford 061b52b2c88751d3393a93b99bc06558 SRA:SRR6213516 https://www.encodeproject.org/files/ENCFF340SQP/@@download/ENCFF340SQP.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking ENCFF790VVG bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF643CGH 4240381409 ENCODE Processing Pipeline 1efd3425f6b890d1a01d990f4854d4ce https://www.encodeproject.org/files/ENCFF790VVG/@@download/ENCFF790VVG.bam GRCh38 released mild to moderate bottlenecking ENCFF285ESK bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF807MUK 4237317609 ENCODE Processing Pipeline e5351e3f14688ae92bff72f1fdfe8bc1 https://www.encodeproject.org/files/ENCFF285ESK/@@download/ENCFF285ESK.bam hg19 released mild to moderate bottlenecking ENCFF145YKB bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF643CGH 5899874914 ENCODE Processing Pipeline 67bf5c2a1dec465480fd8b23b773f207 https://www.encodeproject.org/files/ENCFF145YKB/@@download/ENCFF145YKB.bam GRCh38 released mild to moderate bottlenecking ENCFF431YXJ bam unfiltered alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF807MUK 5898109483 ENCODE Processing Pipeline 23e790c48d26d526a18de074a4b1ca1b https://www.encodeproject.org/files/ENCFF431YXJ/@@download/ENCFF431YXJ.bam hg19 released mild to moderate bottlenecking ENCFF819AJF bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF807MUK 3095087806 ENCODE Processing Pipeline 1a44be4cc2de1ff105c55e592d6cead8 https://www.encodeproject.org/files/ENCFF819AJF/@@download/ENCFF819AJF.bam hg19 released mild to moderate bottlenecking ENCFF282GMA bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF643CGH 3098965398 ENCODE Processing Pipeline f19cee6b5ddd4826c492163770be1328 https://www.encodeproject.org/files/ENCFF282GMA/@@download/ENCFF282GMA.bam GRCh38 released mild to moderate bottlenecking ENCFF342HIU bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF807MUK 3906480223 ENCODE Processing Pipeline 1cc83c1f8e693477806e4c860921f409 https://www.encodeproject.org/files/ENCFF342HIU/@@download/ENCFF342HIU.bam hg19 released mild to moderate bottlenecking ENCFF320FKI bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF643CGH 3911940769 ENCODE Processing Pipeline 3e71393b3e373dc338c70fe9223b9a0e https://www.encodeproject.org/files/ENCFF320FKI/@@download/ENCFF320FKI.bam GRCh38 released mild to moderate bottlenecking ENCFF766CJW bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF342HIU, ENCFF592WAL, ENCFF819AJF, ENCFF901CND 7212921 ENCODE Processing Pipeline e3c92398dd689523b2ea67f443a0b4ce https://www.encodeproject.org/files/ENCFF766CJW/@@download/ENCFF766CJW.bed.gz hg19 released mild to moderate bottlenecking ENCFF826QYL bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF878DLA 13405105 ENCODE Processing Pipeline 6359cedf291b4ec0aacd6129fdc365be https://www.encodeproject.org/files/ENCFF826QYL/@@download/ENCFF826QYL.bigBed hg19 released mild to moderate bottlenecking ENCFF946XRC bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 982500279 ENCODE Processing Pipeline 1ebf36eda527fc3f4f431c21496c8f3d https://www.encodeproject.org/files/ENCFF946XRC/@@download/ENCFF946XRC.bigWig hg19 released mild to moderate bottlenecking ENCFF878DLA bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 6779574 ENCODE Processing Pipeline 7234d3b4a0de8c0f2e2bf90b6035ae20 https://www.encodeproject.org/files/ENCFF878DLA/@@download/ENCFF878DLA.bed.gz hg19 released mild to moderate bottlenecking ENCFF241KMD bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 6464014 ENCODE Processing Pipeline 2faeb82f0ea30ae9a270f9d2fa11cfb2 https://www.encodeproject.org/files/ENCFF241KMD/@@download/ENCFF241KMD.bed.gz hg19 released mild to moderate bottlenecking ENCFF653AWK bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF342HIU, ENCFF592WAL, ENCFF819AJF, ENCFF901CND 2084543669 ENCODE Processing Pipeline 1a53846dbb7eb63ad9ce72d26d1e521d https://www.encodeproject.org/files/ENCFF653AWK/@@download/ENCFF653AWK.bigWig hg19 released mild to moderate bottlenecking ENCFF810CEL bed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF241KMD, ENCFF766CJW, ENCFF878DLA 755749 ENCODE Processing Pipeline 6f809f7b7c61d376d524f1789d35c3dd https://www.encodeproject.org/files/ENCFF810CEL/@@download/ENCFF810CEL.bed.gz hg19 released mild to moderate bottlenecking ENCFF095WDY bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 1042618718 ENCODE Processing Pipeline 968c44f263b577e0b1fc654f5f54eda6 https://www.encodeproject.org/files/ENCFF095WDY/@@download/ENCFF095WDY.bigWig hg19 released mild to moderate bottlenecking ENCFF411KYY bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF241KMD 13411899 ENCODE Processing Pipeline 89e233906bfa2276ac31fcc793ce4ed5 https://www.encodeproject.org/files/ENCFF411KYY/@@download/ENCFF411KYY.bigBed hg19 released mild to moderate bottlenecking ENCFF255HIR bed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF241KMD, ENCFF766CJW, ENCFF878DLA 617371 ENCODE Processing Pipeline ea6af5b6ecf486717609213382a32a01 https://www.encodeproject.org/files/ENCFF255HIR/@@download/ENCFF255HIR.bed.gz hg19 released mild to moderate bottlenecking ENCFF554LUB bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 1296545620 ENCODE Processing Pipeline b286d2cb9767ffd2a3694e0e1e697ae1 https://www.encodeproject.org/files/ENCFF554LUB/@@download/ENCFF554LUB.bigWig hg19 released mild to moderate bottlenecking ENCFF253KZC bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 1232340055 ENCODE Processing Pipeline a543001af08a7818ac21916ba720de3d https://www.encodeproject.org/files/ENCFF253KZC/@@download/ENCFF253KZC.bigWig hg19 released mild to moderate bottlenecking ENCFF123MOV bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF342HIU, ENCFF592WAL, ENCFF819AJF, ENCFF901CND 2122767080 ENCODE Processing Pipeline bdd069c035bdd55334f5865045aef632 https://www.encodeproject.org/files/ENCFF123MOV/@@download/ENCFF123MOV.bigWig hg19 released mild to moderate bottlenecking ENCFF377VLA bigBed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF255HIR 1203121 ENCODE Processing Pipeline f3cd4a803f2a2d2ec618baff623c205c https://www.encodeproject.org/files/ENCFF377VLA/@@download/ENCFF377VLA.bigBed hg19 released mild to moderate bottlenecking ENCFF495PUN bigBed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF810CEL 1739117 ENCODE Processing Pipeline 7ae23c5156406830eca6957f3bb64937 https://www.encodeproject.org/files/ENCFF495PUN/@@download/ENCFF495PUN.bigBed hg19 released mild to moderate bottlenecking ENCFF302QHN bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF766CJW 13407835 ENCODE Processing Pipeline b0f167af95cdf214d055f0fda7293add https://www.encodeproject.org/files/ENCFF302QHN/@@download/ENCFF302QHN.bigBed hg19 released mild to moderate bottlenecking ENCFF801BDJ bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF320FKI, ENCFF666ATR 6755794 ENCODE Processing Pipeline 84d6cf153604240f4953e081689aedc2 https://www.encodeproject.org/files/ENCFF801BDJ/@@download/ENCFF801BDJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF283XOA bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF801BDJ 13389237 ENCODE Processing Pipeline 380b85855ce1ca93c3050069df4b8856 https://www.encodeproject.org/files/ENCFF283XOA/@@download/ENCFF283XOA.bigBed GRCh38 released mild to moderate bottlenecking ENCFF871LEW bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF282GMA, ENCFF322NTO 1082447093 ENCODE Processing Pipeline adebe8f720af8d628815c78dd519d225 https://www.encodeproject.org/files/ENCFF871LEW/@@download/ENCFF871LEW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF652WYR bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF282GMA, ENCFF320FKI, ENCFF322NTO, ENCFF666ATR 2090462181 ENCODE Processing Pipeline e1958b2f016e0fcc9cac6d090678e062 https://www.encodeproject.org/files/ENCFF652WYR/@@download/ENCFF652WYR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF505WJT bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF282GMA, ENCFF320FKI, ENCFF322NTO, ENCFF666ATR 7251460 ENCODE Processing Pipeline 9573cdb76e94026b1911a53f2a1ec4db https://www.encodeproject.org/files/ENCFF505WJT/@@download/ENCFF505WJT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF696BUG bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF608JBJ 13504146 ENCODE Processing Pipeline 8ad0fc4efa9015f4c7e22026edb1008e https://www.encodeproject.org/files/ENCFF696BUG/@@download/ENCFF696BUG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF297ICH bigBed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF505WJT 13457441 ENCODE Processing Pipeline 4cbab36636fcd9270e83a6538a24f74a https://www.encodeproject.org/files/ENCFF297ICH/@@download/ENCFF297ICH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF449PTH bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF320FKI, ENCFF666ATR 1131098769 ENCODE Processing Pipeline dc3706fbb56e40c2552a14ab649970d4 https://www.encodeproject.org/files/ENCFF449PTH/@@download/ENCFF449PTH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF105FEU bigBed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF008DRS 1218611 ENCODE Processing Pipeline 74c821e2f7efdced7ecdeff7b5eeeba4 https://www.encodeproject.org/files/ENCFF105FEU/@@download/ENCFF105FEU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF751ZVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF531KOV 1769024 ENCODE Processing Pipeline abb6ee59b0c5de36c43a23ce2550978f https://www.encodeproject.org/files/ENCFF751ZVQ/@@download/ENCFF751ZVQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF592LFH bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF282GMA, ENCFF322NTO 1041553684 ENCODE Processing Pipeline 4a876f826ef73168016ed376d3ed1289 https://www.encodeproject.org/files/ENCFF592LFH/@@download/ENCFF592LFH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF608JBJ bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF282GMA, ENCFF322NTO 6533951 ENCODE Processing Pipeline 9fae5f643b76bcd891053d49fd98e799 https://www.encodeproject.org/files/ENCFF608JBJ/@@download/ENCFF608JBJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF520UZK bigWig fold change over control ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF320FKI, ENCFF666ATR 1248209886 ENCODE Processing Pipeline 6a7fb480e18c6aef659cf7c84730d216 https://www.encodeproject.org/files/ENCFF520UZK/@@download/ENCFF520UZK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF557EJS bigWig signal p-value ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF282GMA, ENCFF320FKI, ENCFF322NTO, ENCFF666ATR 2075949052 ENCODE Processing Pipeline 86784076b2e1939cd249855ee8ec0bd3 https://www.encodeproject.org/files/ENCFF557EJS/@@download/ENCFF557EJS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF008DRS bed narrowPeak conservative idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF505WJT, ENCFF608JBJ, ENCFF801BDJ 628939 ENCODE Processing Pipeline 4d73da6aaf53801fc2bb3ad7c8f8533c https://www.encodeproject.org/files/ENCFF008DRS/@@download/ENCFF008DRS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF531KOV bed narrowPeak optimal idr thresholded peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF505WJT, ENCFF608JBJ, ENCFF801BDJ 775327 ENCODE Processing Pipeline ba5f88208427b6499d1bdacfed46b815 https://www.encodeproject.org/files/ENCFF531KOV/@@download/ENCFF531KOV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF837EIC fastq reads ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF305DHD 2789643460 Michael Snyder, Stanford fedcf2202f81a1ce1a9e509f783a5f5d https://www.encodeproject.org/files/ENCFF837EIC/@@download/ENCFF837EIC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF305DHD fastq reads ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF837EIC 2864205022 Michael Snyder, Stanford b11aafedaaddddbca1e46965135f00e5 https://www.encodeproject.org/files/ENCFF305DHD/@@download/ENCFF305DHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF226OUO bam unfiltered alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF305DHD, ENCFF643CGH, ENCFF837EIC 6163764583 ENCODE Processing Pipeline 7aff238193f8b2730f07cdb14d57770d https://www.encodeproject.org/files/ENCFF226OUO/@@download/ENCFF226OUO.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF357SMJ bam unfiltered alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF305DHD, ENCFF807MUK, ENCFF837EIC 6159063727 ENCODE Processing Pipeline 1403c79163b2e5d97ac8681687dd6f38 https://www.encodeproject.org/files/ENCFF357SMJ/@@download/ENCFF357SMJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF775RIR bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF305DHD, ENCFF643CGH, ENCFF837EIC 5200941912 ENCODE Processing Pipeline 75a800f81d044c8fa96e8daa92cf46ef https://www.encodeproject.org/files/ENCFF775RIR/@@download/ENCFF775RIR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF320VTA bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF305DHD, ENCFF807MUK, ENCFF837EIC 5200461731 ENCODE Processing Pipeline 9c053327ce109a5f636138a561ea1f2e https://www.encodeproject.org/files/ENCFF320VTA/@@download/ENCFF320VTA.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF821UYQ bigWig signal p-value ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF320VTA 1447806602 ENCODE Processing Pipeline ea10fd0bf649be611229bbf5d05a624f https://www.encodeproject.org/files/ENCFF821UYQ/@@download/ENCFF821UYQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF346AQP bigWig fold change over control ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF775RIR 1545577577 ENCODE Processing Pipeline cfcb91c3049ec0ebdda041d99809941e https://www.encodeproject.org/files/ENCFF346AQP/@@download/ENCFF346AQP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF040IVS bigWig signal p-value ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF775RIR 1386895575 ENCODE Processing Pipeline ac300a32ce04cb2439d18d2e2f6c2967 https://www.encodeproject.org/files/ENCFF040IVS/@@download/ENCFF040IVS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF218DJZ bigWig fold change over control ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF320VTA 1544749020 ENCODE Processing Pipeline 6380b4111bf11de6d5e69fec7a7a0081 https://www.encodeproject.org/files/ENCFF218DJZ/@@download/ENCFF218DJZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF977LDX bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF320VTA 6804836 ENCODE Processing Pipeline af8402325f1ccffd68c521e6e22921ed https://www.encodeproject.org/files/ENCFF977LDX/@@download/ENCFF977LDX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF931ELB bigBed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF803DWT 13404840 ENCODE Processing Pipeline 87eeac242ae92fa1b20b77f81f37dbeb https://www.encodeproject.org/files/ENCFF931ELB/@@download/ENCFF931ELB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF362ESX bigBed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF977LDX 13394358 ENCODE Processing Pipeline 346101124cf650b54a41bf1cb22158ff https://www.encodeproject.org/files/ENCFF362ESX/@@download/ENCFF362ESX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF126KYT bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF514FUK, ENCFF643CGH, ENCFF796PBA 4575805888 ENCODE Processing Pipeline e1475c9297a32ad6be64a4550d419962 https://www.encodeproject.org/files/ENCFF126KYT/@@download/ENCFF126KYT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF831LJH bam unfiltered alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF514FUK, ENCFF643CGH, ENCFF796PBA 5084239728 ENCODE Processing Pipeline 0c277b371d3fbb04e7f09da4626dea96 https://www.encodeproject.org/files/ENCFF831LJH/@@download/ENCFF831LJH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF514FUK fastq reads ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF796PBA 2569899544 Michael Snyder, Stanford b052dcfe75c5541b117ebf9cc652a7ea https://www.encodeproject.org/files/ENCFF514FUK/@@download/ENCFF514FUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF796PBA fastq reads ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF514FUK 2564441797 Michael Snyder, Stanford 2196d63495628ecdd200a50a60a1c906 https://www.encodeproject.org/files/ENCFF796PBA/@@download/ENCFF796PBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF604EUT bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF514FUK, ENCFF796PBA, ENCFF807MUK 4577653790 ENCODE Processing Pipeline f952ed9e672464ee2fa88fa33619ed35 https://www.encodeproject.org/files/ENCFF604EUT/@@download/ENCFF604EUT.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF929KIX bam unfiltered alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF514FUK, ENCFF796PBA, ENCFF807MUK 5078465529 ENCODE Processing Pipeline ec3422e9a81335c1a2d3b17782c4ec63 https://www.encodeproject.org/files/ENCFF929KIX/@@download/ENCFF929KIX.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF998SUU bigWig signal p-value ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF320VTA, ENCFF604EUT 1988851652 ENCODE Processing Pipeline 464a940835173b9a8ff422eaea74f8bc https://www.encodeproject.org/files/ENCFF998SUU/@@download/ENCFF998SUU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF634RHD bigWig signal p-value ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF126KYT 1326018777 ENCODE Processing Pipeline bf836f7113972b3901ee66993a4421a9 https://www.encodeproject.org/files/ENCFF634RHD/@@download/ENCFF634RHD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF665WES bigWig signal p-value ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF604EUT 1226138945 ENCODE Processing Pipeline a38d660f6034acfa6092692931616df1 https://www.encodeproject.org/files/ENCFF665WES/@@download/ENCFF665WES.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF949VDI bigWig signal p-value ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF126KYT, ENCFF775RIR 1990037435 ENCODE Processing Pipeline a62afa3cf18169df9c17c2a056e3008e https://www.encodeproject.org/files/ENCFF949VDI/@@download/ENCFF949VDI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF288IGA bigWig fold change over control ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF126KYT 1390961311 ENCODE Processing Pipeline 768188dfbbbbf46bc5b0475d9f3163f2 https://www.encodeproject.org/files/ENCFF288IGA/@@download/ENCFF288IGA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF345XOW bigWig fold change over control ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF604EUT 1394750614 ENCODE Processing Pipeline 41318785fb3e27aedd423f5cfbbb6e62 https://www.encodeproject.org/files/ENCFF345XOW/@@download/ENCFF345XOW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF951QOC bigWig fold change over control ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF126KYT, ENCFF775RIR 2073990905 ENCODE Processing Pipeline 92e0e6811ac5fdeb7c32f697acd762b6 https://www.encodeproject.org/files/ENCFF951QOC/@@download/ENCFF951QOC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF020OUD bigBed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF176EHO 13211370 ENCODE Processing Pipeline 4e75ed8eea5c312186e9e9062db56001 https://www.encodeproject.org/files/ENCFF020OUD/@@download/ENCFF020OUD.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF347IBU bed narrowPeak optimal idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF176EHO, ENCFF419RSJ, ENCFF461WNW, ENCFF803DWT 362097 ENCODE Processing Pipeline de19e0c094d372e327b13ca665d38827 https://www.encodeproject.org/files/ENCFF347IBU/@@download/ENCFF347IBU.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF803DWT bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF775RIR 6802041 ENCODE Processing Pipeline 322499ec501c79df9af4efabdeab0e74 https://www.encodeproject.org/files/ENCFF803DWT/@@download/ENCFF803DWT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF251NMK bigBed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF461WNW 13192890 ENCODE Processing Pipeline f61c593385d97889b607c3299a0b2034 https://www.encodeproject.org/files/ENCFF251NMK/@@download/ENCFF251NMK.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF176EHO bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF126KYT 7072110 ENCODE Processing Pipeline 4a0b2bee66d4cad977d2206479e7722f https://www.encodeproject.org/files/ENCFF176EHO/@@download/ENCFF176EHO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF461WNW bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF126KYT, ENCFF775RIR 7246221 ENCODE Processing Pipeline 1f835c5094bd9092958b4de9ef1149a2 https://www.encodeproject.org/files/ENCFF461WNW/@@download/ENCFF461WNW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF952ZBV bigBed narrowPeak optimal idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF347IBU 756450 ENCODE Processing Pipeline 473177a9e0793f7e7908ccff3fc356f7 https://www.encodeproject.org/files/ENCFF952ZBV/@@download/ENCFF952ZBV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF948BQI bigWig fold change over control ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF320VTA, ENCFF604EUT 2073836106 ENCODE Processing Pipeline cef7c072e64590dd7dd90bab52fef783 https://www.encodeproject.org/files/ENCFF948BQI/@@download/ENCFF948BQI.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF405UNY bigBed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF915EDD 13197107 ENCODE Processing Pipeline 2cda736a82fb4653303e5ea28d1d6d5d https://www.encodeproject.org/files/ENCFF405UNY/@@download/ENCFF405UNY.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF520TCF bed narrowPeak conservative idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF176EHO, ENCFF419RSJ, ENCFF461WNW, ENCFF803DWT 165341 ENCODE Processing Pipeline e7fb22e650e69001bf5a0876f2e82a2f https://www.encodeproject.org/files/ENCFF520TCF/@@download/ENCFF520TCF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF076NNK bigBed narrowPeak conservative idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF520TCF 352085 ENCODE Processing Pipeline 6c11c3c44e26a87c31605033c4b7dd65 https://www.encodeproject.org/files/ENCFF076NNK/@@download/ENCFF076NNK.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF915EDD bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF604EUT 7066448 ENCODE Processing Pipeline 0d3dc14b2c4d9f7d1d6e8d6be2ad8730 https://www.encodeproject.org/files/ENCFF915EDD/@@download/ENCFF915EDD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF299YLG bigBed narrowPeak conservative idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF034ISD 352197 ENCODE Processing Pipeline ffb7358e37d022cad9fb2b2c9bc575d3 https://www.encodeproject.org/files/ENCFF299YLG/@@download/ENCFF299YLG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF038EBI bigBed narrowPeak optimal idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF648HOQ 745159 ENCODE Processing Pipeline af5cf5ddc0cbdb2afe088164cf665258 https://www.encodeproject.org/files/ENCFF038EBI/@@download/ENCFF038EBI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF066CDS bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF320VTA, ENCFF604EUT 7248327 ENCODE Processing Pipeline 5bc63d425da532603846e0bd52718c76 https://www.encodeproject.org/files/ENCFF066CDS/@@download/ENCFF066CDS.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF933COC bigBed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF066CDS 13181304 ENCODE Processing Pipeline c8b0bc0adf90ec6eb3491550579c601f https://www.encodeproject.org/files/ENCFF933COC/@@download/ENCFF933COC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF034ISD bed narrowPeak conservative idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF066CDS, ENCFF915EDD, ENCFF977LDX 166056 ENCODE Processing Pipeline 04d037411d7a21a47c88419c127e5701 https://www.encodeproject.org/files/ENCFF034ISD/@@download/ENCFF034ISD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF648HOQ bed narrowPeak optimal idr thresholded peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF066CDS, ENCFF915EDD, ENCFF977LDX 355104 ENCODE Processing Pipeline 0825488f59b4fbe8990ffac4231a7b7b https://www.encodeproject.org/files/ENCFF648HOQ/@@download/ENCFF648HOQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF461NQQ fastq reads ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 1 101 paired-ended 2 ENCFF707AMG 4973489363 Michael Snyder, Stanford 69ffcdddee27277da8152f581c3cf577 SRA:SRR6212975 https://www.encodeproject.org/files/ENCFF461NQQ/@@download/ENCFF461NQQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF423IUW fastq reads ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 1 101 paired-ended 2 ENCFF558LMK 3628769936 Michael Snyder, Stanford 8dd24420cddbb6fa18711d913afa3ff5 SRA:SRR6212976 https://www.encodeproject.org/files/ENCFF423IUW/@@download/ENCFF423IUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF707AMG fastq reads ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 1 101 paired-ended 1 ENCFF461NQQ 4976971404 Michael Snyder, Stanford 29316d54f42154418a4cbf10ab940de4 SRA:SRR6212975 https://www.encodeproject.org/files/ENCFF707AMG/@@download/ENCFF707AMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF558LMK fastq reads ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 1 101 paired-ended 1 ENCFF423IUW 3625956172 Michael Snyder, Stanford 4f9ce0fca19e2f5885be012beabce7a8 SRA:SRR6212976 https://www.encodeproject.org/files/ENCFF558LMK/@@download/ENCFF558LMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF690IMR bam unfiltered alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF423IUW, ENCFF558LMK, ENCFF643CGH 7208279645 ENCODE Processing Pipeline 2ae5e320adf0fecfb0a7174de5c170b7 https://www.encodeproject.org/files/ENCFF690IMR/@@download/ENCFF690IMR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF945FHH bam unfiltered alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF423IUW, ENCFF558LMK, ENCFF807MUK 7199178795 ENCODE Processing Pipeline da4a5c2e470384da9ed32867c6c58694 https://www.encodeproject.org/files/ENCFF945FHH/@@download/ENCFF945FHH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF995SZG bam unfiltered alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF461NQQ, ENCFF707AMG, ENCFF807MUK 9591614860 ENCODE Processing Pipeline 75960d96c00c045605556704df6f6b15 https://www.encodeproject.org/files/ENCFF995SZG/@@download/ENCFF995SZG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF753JWH bam unfiltered alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF461NQQ, ENCFF643CGH, ENCFF707AMG 9602970806 ENCODE Processing Pipeline 0ff8a67e4f517c44f4b1231b96097329 https://www.encodeproject.org/files/ENCFF753JWH/@@download/ENCFF753JWH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF659TYR bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF423IUW, ENCFF558LMK, ENCFF643CGH 6313259800 ENCODE Processing Pipeline f1e0b85ce56494328f871c6027b36bc8 https://www.encodeproject.org/files/ENCFF659TYR/@@download/ENCFF659TYR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF173XUI bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF423IUW, ENCFF558LMK, ENCFF807MUK 6310942603 ENCODE Processing Pipeline b6245a223c2557e919de3398cc326c23 https://www.encodeproject.org/files/ENCFF173XUI/@@download/ENCFF173XUI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF548QML bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF461NQQ, ENCFF707AMG, ENCFF807MUK 8419860856 ENCODE Processing Pipeline 504c7107308de4f60dbef689f5e63ad5 https://www.encodeproject.org/files/ENCFF548QML/@@download/ENCFF548QML.bam hg19 released missing genetic modification characterization missing control alignments ENCFF745TSL bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF461NQQ, ENCFF643CGH, ENCFF707AMG 8422512969 ENCODE Processing Pipeline 4b2f746446b1bd2c195fff463a69243a https://www.encodeproject.org/files/ENCFF745TSL/@@download/ENCFF745TSL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF096PLC bigWig signal p-value ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF548QML 1894943373 ENCODE Processing Pipeline 30bdae915fd1eb789b8c4b6fe37fcb52 https://www.encodeproject.org/files/ENCFF096PLC/@@download/ENCFF096PLC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF646FHQ bigWig signal p-value ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF173XUI 1299852507 ENCODE Processing Pipeline 9e2a920be94a42ac2649a61a3a63a72a https://www.encodeproject.org/files/ENCFF646FHQ/@@download/ENCFF646FHQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF591SCG bigWig signal p-value ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF173XUI, ENCFF548QML 1958369507 ENCODE Processing Pipeline 78b118ba75ac8a321e7c054e7aaf5d63 https://www.encodeproject.org/files/ENCFF591SCG/@@download/ENCFF591SCG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF263HZC bigWig fold change over control ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF548QML 1929123171 ENCODE Processing Pipeline a9cdbd8d3d3bc414d6cbce4d5a28d55c https://www.encodeproject.org/files/ENCFF263HZC/@@download/ENCFF263HZC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF480LEP bigWig fold change over control ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF173XUI 1688382758 ENCODE Processing Pipeline 8bc6695930ebd33769a2c0b51e955485 https://www.encodeproject.org/files/ENCFF480LEP/@@download/ENCFF480LEP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF873AHU bigWig fold change over control ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF173XUI, ENCFF548QML 2451768749 ENCODE Processing Pipeline 6d8ddc7cc1d747a534786165bb847900 https://www.encodeproject.org/files/ENCFF873AHU/@@download/ENCFF873AHU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF270TNU bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF548QML 7243691 ENCODE Processing Pipeline 6cd5cf21fa851e6cd434fc9e866c764f https://www.encodeproject.org/files/ENCFF270TNU/@@download/ENCFF270TNU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF097BFF bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF173XUI 7162408 ENCODE Processing Pipeline f044eeb8cb58e58f96a45cd37a2df892 https://www.encodeproject.org/files/ENCFF097BFF/@@download/ENCFF097BFF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF919LFI bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF173XUI, ENCFF548QML 7311902 ENCODE Processing Pipeline f48ff532e8d248af58c83e3ba656b034 https://www.encodeproject.org/files/ENCFF919LFI/@@download/ENCFF919LFI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF963LVV bigBed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF270TNU 13150811 ENCODE Processing Pipeline 052e3c30d7b873221b1e84710bda4d2e https://www.encodeproject.org/files/ENCFF963LVV/@@download/ENCFF963LVV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF796LOA bigBed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF097BFF 13206176 ENCODE Processing Pipeline 84fdb47b98501beee7005637ee3cfdca https://www.encodeproject.org/files/ENCFF796LOA/@@download/ENCFF796LOA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF344EZB bigBed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF919LFI 13093496 ENCODE Processing Pipeline a35131e170c1cc9817315fa8cdd16b99 https://www.encodeproject.org/files/ENCFF344EZB/@@download/ENCFF344EZB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF119SYV bigBed narrowPeak optimal idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF441VSN 817623 ENCODE Processing Pipeline 786c2533509c46d002bc314b351034cd https://www.encodeproject.org/files/ENCFF119SYV/@@download/ENCFF119SYV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF549FVD bigBed narrowPeak conservative idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF261ZFX 730089 ENCODE Processing Pipeline 6fa65e1ed21a03941f40b650b56f490c https://www.encodeproject.org/files/ENCFF549FVD/@@download/ENCFF549FVD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF261ZFX bed narrowPeak conservative idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF001TDO, ENCFF097BFF, ENCFF270TNU, ENCFF919LFI 362443 ENCODE Processing Pipeline 5451504f16fef2d6458772b744f1c8b4 https://www.encodeproject.org/files/ENCFF261ZFX/@@download/ENCFF261ZFX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF441VSN bed narrowPeak optimal idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF001TDO, ENCFF097BFF, ENCFF270TNU, ENCFF919LFI 417156 ENCODE Processing Pipeline 82d6ea6c4153461fb6faa10a36f1ace0 https://www.encodeproject.org/files/ENCFF441VSN/@@download/ENCFF441VSN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF892XFL bigWig signal p-value ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF659TYR 1410931359 ENCODE Processing Pipeline e263daf2da372d9c8337e56ba9ff10bb https://www.encodeproject.org/files/ENCFF892XFL/@@download/ENCFF892XFL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF965TUJ bigWig signal p-value ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF745TSL 1896873288 ENCODE Processing Pipeline 3ebbb30a21b381b12de13af92b722ac6 https://www.encodeproject.org/files/ENCFF965TUJ/@@download/ENCFF965TUJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF165GJM bigWig signal p-value ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF659TYR, ENCFF745TSL 1969263193 ENCODE Processing Pipeline 29e7c77a09e2463b111694cba34821ed https://www.encodeproject.org/files/ENCFF165GJM/@@download/ENCFF165GJM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF461CEZ bigWig fold change over control ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF745TSL 1925458676 ENCODE Processing Pipeline d6031483bd840bc054051d8d50b340ba https://www.encodeproject.org/files/ENCFF461CEZ/@@download/ENCFF461CEZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF449HLS bigWig fold change over control ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF659TYR 1688768054 ENCODE Processing Pipeline c75d276251cedefcefb07ed6d68223e3 https://www.encodeproject.org/files/ENCFF449HLS/@@download/ENCFF449HLS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF425RKN bigWig fold change over control ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF659TYR, ENCFF745TSL 2469834564 ENCODE Processing Pipeline 247a49e3e0c9c497dadd9a26fd1727eb https://www.encodeproject.org/files/ENCFF425RKN/@@download/ENCFF425RKN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF171ZMH bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF745TSL 7228008 ENCODE Processing Pipeline 3d78905890cc697aa16c8ad8990c5860 https://www.encodeproject.org/files/ENCFF171ZMH/@@download/ENCFF171ZMH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF543UOD bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF659TYR, ENCFF745TSL 7311518 ENCODE Processing Pipeline 2881ea67317de61aa54cdf436fa6f534 https://www.encodeproject.org/files/ENCFF543UOD/@@download/ENCFF543UOD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF678QJD bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF659TYR 7114877 ENCODE Processing Pipeline c48d2cb07345a50abddeaa5ddb6ca07c https://www.encodeproject.org/files/ENCFF678QJD/@@download/ENCFF678QJD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF231JUX bigBed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF171ZMH 13163214 ENCODE Processing Pipeline 98177c5c8accfc4feffa7b8eb4c5e308 https://www.encodeproject.org/files/ENCFF231JUX/@@download/ENCFF231JUX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF483HMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF931AKO 728173 ENCODE Processing Pipeline 8f5cdae7be1bfb3a8d3914675d5949d5 https://www.encodeproject.org/files/ENCFF483HMQ/@@download/ENCFF483HMQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF042HVV bigBed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF678QJD 13217693 ENCODE Processing Pipeline d58f9f3ad45af8dbd1d76c88ff12a3d2 https://www.encodeproject.org/files/ENCFF042HVV/@@download/ENCFF042HVV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF676QQC bed narrowPeak optimal idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF171ZMH, ENCFF419RSJ, ENCFF543UOD, ENCFF678QJD 411003 ENCODE Processing Pipeline 2670ba3e006c21f9cba8a93bd12e54b4 https://www.encodeproject.org/files/ENCFF676QQC/@@download/ENCFF676QQC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF542RBN bigBed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF543UOD 13104286 ENCODE Processing Pipeline 0e287bc8e34e911dd5314b43173f8125 https://www.encodeproject.org/files/ENCFF542RBN/@@download/ENCFF542RBN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF931AKO bed narrowPeak conservative idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF171ZMH, ENCFF419RSJ, ENCFF543UOD, ENCFF678QJD 361133 ENCODE Processing Pipeline 9423b2e9eaea907bafc2972f5767e3c4 https://www.encodeproject.org/files/ENCFF931AKO/@@download/ENCFF931AKO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF262ONP bigBed narrowPeak optimal idr thresholded peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1, 2 ENCFF676QQC 810434 ENCODE Processing Pipeline 0af29eb01859e55901ea2a43530229d0 https://www.encodeproject.org/files/ENCFF262ONP/@@download/ENCFF262ONP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF083PWC fastq reads ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF597BCH 2301780438 Michael Snyder, Stanford b538925e83baea8374eddb766590b50f SRA:SRR5112373 https://www.encodeproject.org/files/ENCFF083PWC/@@download/ENCFF083PWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF352QLC fastq reads ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF927JLA 2077247827 Michael Snyder, Stanford bf205e4b8606abf0c1d00770fd5b9632 SRA:SRR5112374 https://www.encodeproject.org/files/ENCFF352QLC/@@download/ENCFF352QLC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF597BCH fastq reads ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF083PWC 2307134722 Michael Snyder, Stanford 5e7b34c02e829e4ec4cce230a3768d94 SRA:SRR5112373 https://www.encodeproject.org/files/ENCFF597BCH/@@download/ENCFF597BCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF927JLA fastq reads ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF352QLC 2084594824 Michael Snyder, Stanford 62b9231aa31eb29d89e8825b05e5e184 SRA:SRR5112374 https://www.encodeproject.org/files/ENCFF927JLA/@@download/ENCFF927JLA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF143SQI bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF352QLC, ENCFF807MUK, ENCFF927JLA 4028917052 ENCODE Processing Pipeline 5f7e6e41252c03e63075262555cc188e https://www.encodeproject.org/files/ENCFF143SQI/@@download/ENCFF143SQI.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF057JCM bam unfiltered alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF352QLC, ENCFF807MUK, ENCFF927JLA 4668155672 ENCODE Processing Pipeline c51da0f54375692989ae8804180722d0 https://www.encodeproject.org/files/ENCFF057JCM/@@download/ENCFF057JCM.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF984BHZ bam unfiltered alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF083PWC, ENCFF597BCH, ENCFF807MUK 5150365273 ENCODE Processing Pipeline 6ab5831675c7a40ab3fcd3c82104453b https://www.encodeproject.org/files/ENCFF984BHZ/@@download/ENCFF984BHZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF088QHZ bam unfiltered alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF352QLC, ENCFF643CGH, ENCFF927JLA 4674705149 ENCODE Processing Pipeline 60d24f73112e681e1fef023b26a83e24 https://www.encodeproject.org/files/ENCFF088QHZ/@@download/ENCFF088QHZ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF106SUL bam unfiltered alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF083PWC, ENCFF597BCH, ENCFF643CGH 5157479118 ENCODE Processing Pipeline 8db6dd9d24a4092d593853e26420d8bf https://www.encodeproject.org/files/ENCFF106SUL/@@download/ENCFF106SUL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF379HWR bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF083PWC, ENCFF597BCH, ENCFF807MUK 4489232191 ENCODE Processing Pipeline c64a99bc6f43e2e727c107226977ae84 https://www.encodeproject.org/files/ENCFF379HWR/@@download/ENCFF379HWR.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF343NMF bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF352QLC, ENCFF643CGH, ENCFF927JLA 4031919016 ENCODE Processing Pipeline 900380de55db8878b1186d97bd648d05 https://www.encodeproject.org/files/ENCFF343NMF/@@download/ENCFF343NMF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF623VBL bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF083PWC, ENCFF597BCH, ENCFF643CGH 4492553718 ENCODE Processing Pipeline 59bf65a80e0ebf4114cb7b38a621e809 https://www.encodeproject.org/files/ENCFF623VBL/@@download/ENCFF623VBL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF983YJT bigWig signal p-value ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF379HWR 1393320892 ENCODE Processing Pipeline 30cdd631da64bd2e5b474a83c73c536f https://www.encodeproject.org/files/ENCFF983YJT/@@download/ENCFF983YJT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF764HTM bigWig signal p-value ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF143SQI 1428434316 ENCODE Processing Pipeline c5b96ece182be8a1c40a4e95d0c84e74 https://www.encodeproject.org/files/ENCFF764HTM/@@download/ENCFF764HTM.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF603POF bigWig signal p-value ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF143SQI, ENCFF379HWR 1933387609 ENCODE Processing Pipeline 1bba6ff661335bdf5de1f73f8520427f https://www.encodeproject.org/files/ENCFF603POF/@@download/ENCFF603POF.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF820MBG bigWig fold change over control ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF379HWR 1433003953 ENCODE Processing Pipeline 797f920a94c2b21cc4fbcdc91895f619 https://www.encodeproject.org/files/ENCFF820MBG/@@download/ENCFF820MBG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF713ZXV bigWig fold change over control ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF143SQI 1300233465 ENCODE Processing Pipeline c05b196cb51e05a9f64d68ed66350b0d https://www.encodeproject.org/files/ENCFF713ZXV/@@download/ENCFF713ZXV.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF998YNI bigWig fold change over control ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF143SQI, ENCFF379HWR 1954691539 ENCODE Processing Pipeline d508a4e1dc72b168892a934b8dc69522 https://www.encodeproject.org/files/ENCFF998YNI/@@download/ENCFF998YNI.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF627HIA bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF379HWR 6575790 ENCODE Processing Pipeline f6e9ceefd857326956cdf8771cd1b052 https://www.encodeproject.org/files/ENCFF627HIA/@@download/ENCFF627HIA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF501UFT bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF143SQI 6455826 ENCODE Processing Pipeline d6763d1e4a78bf1969c31b1408a24757 https://www.encodeproject.org/files/ENCFF501UFT/@@download/ENCFF501UFT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF016TVQ bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF143SQI, ENCFF379HWR 7088468 ENCODE Processing Pipeline 3a1bf6a7d2fdb0d4022464ab2c1e6457 https://www.encodeproject.org/files/ENCFF016TVQ/@@download/ENCFF016TVQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF876BPY bigBed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF501UFT 11374242 ENCODE Processing Pipeline 7912c6d596d86d0094feffe0f0949323 https://www.encodeproject.org/files/ENCFF876BPY/@@download/ENCFF876BPY.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF056UJG bigBed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF627HIA 11292812 ENCODE Processing Pipeline 6d810405c984391ef95dcf187d852ae1 https://www.encodeproject.org/files/ENCFF056UJG/@@download/ENCFF056UJG.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF783ECQ bigBed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF016TVQ 11137880 ENCODE Processing Pipeline a563b9d2b73eb8cd419b0f82cfd70264 https://www.encodeproject.org/files/ENCFF783ECQ/@@download/ENCFF783ECQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF555MEJ bed narrowPeak conservative idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF016TVQ, ENCFF501UFT, ENCFF627HIA 84704 ENCODE Processing Pipeline ba423d0acae4b195238cac82f376c9b4 https://www.encodeproject.org/files/ENCFF555MEJ/@@download/ENCFF555MEJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF954HYI bed narrowPeak optimal idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF016TVQ, ENCFF501UFT, ENCFF627HIA 129494 ENCODE Processing Pipeline 38ec8d2515e424a6dd80d7b526ba6e7a https://www.encodeproject.org/files/ENCFF954HYI/@@download/ENCFF954HYI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF028MQP bigBed narrowPeak conservative idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF555MEJ 185417 ENCODE Processing Pipeline ab5656d1888f4fce8341aab9b5a5cc41 https://www.encodeproject.org/files/ENCFF028MQP/@@download/ENCFF028MQP.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF279NNL bigBed narrowPeak optimal idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF954HYI 295022 ENCODE Processing Pipeline 1198f561e5d01411a57d52a64506b6b6 https://www.encodeproject.org/files/ENCFF279NNL/@@download/ENCFF279NNL.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF066JEI bigWig signal p-value ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF623VBL 1245071956 ENCODE Processing Pipeline 92fa9eaf1abb3b085e01a1b065d26c11 https://www.encodeproject.org/files/ENCFF066JEI/@@download/ENCFF066JEI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF740ECA bigWig signal p-value ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF343NMF 1172621819 ENCODE Processing Pipeline 615f53b17b90d7bfa70e632cf14dfdfc https://www.encodeproject.org/files/ENCFF740ECA/@@download/ENCFF740ECA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF329TCS bigWig signal p-value ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF343NMF, ENCFF623VBL 1771622434 ENCODE Processing Pipeline 2f2e11d81fe54479e873d4bb53cbbd0f https://www.encodeproject.org/files/ENCFF329TCS/@@download/ENCFF329TCS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF691BJS bigWig fold change over control ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF623VBL 1425859001 ENCODE Processing Pipeline 3e89e4a0864f9fb20f8c53541c11fa15 https://www.encodeproject.org/files/ENCFF691BJS/@@download/ENCFF691BJS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF744PVR bigWig fold change over control ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF343NMF 1364160276 ENCODE Processing Pipeline c573388ded05fee114fd3959619ca09b https://www.encodeproject.org/files/ENCFF744PVR/@@download/ENCFF744PVR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF446PCG bigWig fold change over control ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF343NMF, ENCFF623VBL 1920096016 ENCODE Processing Pipeline 65a6d99eedcd1e57cab789c4868f1530 https://www.encodeproject.org/files/ENCFF446PCG/@@download/ENCFF446PCG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF252PWN bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF623VBL 6434985 ENCODE Processing Pipeline 3ed37e91746625da6c021c107e8ccecc https://www.encodeproject.org/files/ENCFF252PWN/@@download/ENCFF252PWN.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF260FIO bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF343NMF 6317774 ENCODE Processing Pipeline 0b7a0fb4348939375dd0d5a9d1515aa4 https://www.encodeproject.org/files/ENCFF260FIO/@@download/ENCFF260FIO.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF783WCN bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF343NMF, ENCFF623VBL 7021383 ENCODE Processing Pipeline f573601bf74f0b488bb872dac7414634 https://www.encodeproject.org/files/ENCFF783WCN/@@download/ENCFF783WCN.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF201LMX bigBed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF252PWN 11298882 ENCODE Processing Pipeline c3f297e5a125f2f8222f2a48f8644ff1 https://www.encodeproject.org/files/ENCFF201LMX/@@download/ENCFF201LMX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF949FQR bigBed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF260FIO 11381369 ENCODE Processing Pipeline 62da90de2e83c1fc25828bb09ad8630a https://www.encodeproject.org/files/ENCFF949FQR/@@download/ENCFF949FQR.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF877ZEB bed narrowPeak conservative idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF252PWN, ENCFF260FIO, ENCFF419RSJ, ENCFF783WCN 85306 ENCODE Processing Pipeline c179d50b4cc51627dd881132b0d3ddd3 https://www.encodeproject.org/files/ENCFF877ZEB/@@download/ENCFF877ZEB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF475GLU bigBed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF783WCN 11136272 ENCODE Processing Pipeline 44e44ad0c5476769307b9b2666892ab3 https://www.encodeproject.org/files/ENCFF475GLU/@@download/ENCFF475GLU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF045IDO bigBed narrowPeak conservative idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF877ZEB 187565 ENCODE Processing Pipeline de8e5194d1762ca9390e36f5b59ad592 https://www.encodeproject.org/files/ENCFF045IDO/@@download/ENCFF045IDO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF208ZPU bigBed narrowPeak optimal idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF107CPY 291666 ENCODE Processing Pipeline 00e4184c899442dfd7a200e9c442d2d0 https://www.encodeproject.org/files/ENCFF208ZPU/@@download/ENCFF208ZPU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF107CPY bed narrowPeak optimal idr thresholded peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF252PWN, ENCFF260FIO, ENCFF419RSJ, ENCFF783WCN 126287 ENCODE Processing Pipeline bde737a1fc7477c321f069a64cc47b8b https://www.encodeproject.org/files/ENCFF107CPY/@@download/ENCFF107CPY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF906JOB fastq reads ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF992YHZ 3516380093 Michael Snyder, Stanford 6798c322353c49708110bb90fc92e986 SRA:SRR6212637 https://www.encodeproject.org/files/ENCFF906JOB/@@download/ENCFF906JOB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance ENCFF992YHZ fastq reads ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF906JOB 3620344872 Michael Snyder, Stanford e0bca208b2d3882094b718a8915b1710 SRA:SRR6212637 https://www.encodeproject.org/files/ENCFF992YHZ/@@download/ENCFF992YHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance ENCFF481UNM fastq reads ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF110AZC 2784919294 Michael Snyder, Stanford 6b64b4581aa8046d48c9dd77934303bb SRA:SRR6212638 https://www.encodeproject.org/files/ENCFF481UNM/@@download/ENCFF481UNM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance ENCFF110AZC fastq reads ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF481UNM 2869587206 Michael Snyder, Stanford f450f7c4afa1546d88f408000e877a6f SRA:SRR6212638 https://www.encodeproject.org/files/ENCFF110AZC/@@download/ENCFF110AZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance ENCFF469CIQ bam unfiltered alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 100 ENCFF110AZC, ENCFF481UNM, ENCFF643CGH 6268056749 ENCODE Processing Pipeline 3dd84b837b1c235300578fd51757a9f8 https://www.encodeproject.org/files/ENCFF469CIQ/@@download/ENCFF469CIQ.bam GRCh38 released borderline replicate concordance ENCFF464YVO bam unfiltered alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 100 ENCFF643CGH, ENCFF906JOB, ENCFF992YHZ 7764802983 ENCODE Processing Pipeline 22ce4efb81ce2c825b5c27500b108bd9 https://www.encodeproject.org/files/ENCFF464YVO/@@download/ENCFF464YVO.bam GRCh38 released borderline replicate concordance ENCFF476CCE bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 100 ENCFF110AZC, ENCFF481UNM, ENCFF643CGH 5269255355 ENCODE Processing Pipeline 54031b14328d86ead44a970b65ee52ae https://www.encodeproject.org/files/ENCFF476CCE/@@download/ENCFF476CCE.bam GRCh38 released borderline replicate concordance ENCFF949KJV bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 100 ENCFF643CGH, ENCFF906JOB, ENCFF992YHZ 6634078591 ENCODE Processing Pipeline 3e0d1b70a5600216a17aec0549020cdd https://www.encodeproject.org/files/ENCFF949KJV/@@download/ENCFF949KJV.bam GRCh38 released borderline replicate concordance ENCFF780XOC bigWig signal p-value ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF190EPQ, ENCFF476CCE 1006758157 ENCODE Processing Pipeline efa7087dad43f7faaa317cba0fed7bfd https://www.encodeproject.org/files/ENCFF780XOC/@@download/ENCFF780XOC.bigWig GRCh38 released borderline replicate concordance ENCFF099SQG bed narrowPeak conservative idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF533DMT, ENCFF702QGM, ENCFF963RIK 13538 ENCODE Processing Pipeline 68835bcf60e208216617f2895babd661 https://www.encodeproject.org/files/ENCFF099SQG/@@download/ENCFF099SQG.bed.gz GRCh38 released borderline replicate concordance ENCFF764YKH bigBed narrowPeak optimal idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF616WXJ 118525 ENCODE Processing Pipeline 4c5df34acb069590b483bac125b70c3b https://www.encodeproject.org/files/ENCFF764YKH/@@download/ENCFF764YKH.bigBed GRCh38 released borderline replicate concordance ENCFF695IGE bigWig signal p-value ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF476CCE, ENCFF949KJV, ENCFF950AXC 2042974239 ENCODE Processing Pipeline 0424e213b2a5ec4299ea8fce25f71ce5 https://www.encodeproject.org/files/ENCFF695IGE/@@download/ENCFF695IGE.bigWig GRCh38 released borderline replicate concordance ENCFF136WRB bigWig fold change over control ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF190EPQ, ENCFF476CCE 1289544565 ENCODE Processing Pipeline cc7479565784ee437ebf6bfbfbb54b34 https://www.encodeproject.org/files/ENCFF136WRB/@@download/ENCFF136WRB.bigWig GRCh38 released borderline replicate concordance ENCFF167MJH bigBed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF533DMT 11379271 ENCODE Processing Pipeline 046fe43f14be0d54c6446fe0d41f1753 https://www.encodeproject.org/files/ENCFF167MJH/@@download/ENCFF167MJH.bigBed GRCh38 released borderline replicate concordance ENCFF042UKL bigWig signal p-value ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF190EPQ, ENCFF949KJV, ENCFF950AXC 1607989279 ENCODE Processing Pipeline dd286c7ec18df26459e207bfdc8886bc https://www.encodeproject.org/files/ENCFF042UKL/@@download/ENCFF042UKL.bigWig GRCh38 released borderline replicate concordance ENCFF949FQC bigWig fold change over control ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF190EPQ, ENCFF949KJV, ENCFF950AXC 1836934066 ENCODE Processing Pipeline aec43a695065dcb457cf16a253d8c975 https://www.encodeproject.org/files/ENCFF949FQC/@@download/ENCFF949FQC.bigWig GRCh38 released borderline replicate concordance ENCFF866XWN bigWig fold change over control ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF476CCE, ENCFF949KJV, ENCFF950AXC 2293663916 ENCODE Processing Pipeline 1556fe869f84da9d15680318d3e23f7e https://www.encodeproject.org/files/ENCFF866XWN/@@download/ENCFF866XWN.bigWig GRCh38 released borderline replicate concordance ENCFF533DMT bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF190EPQ, ENCFF476CCE 5905240 ENCODE Processing Pipeline 0268331b95f7d2f749b2b7e74b509cca https://www.encodeproject.org/files/ENCFF533DMT/@@download/ENCFF533DMT.bed.gz GRCh38 released borderline replicate concordance ENCFF702QGM bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF190EPQ, ENCFF949KJV, ENCFF950AXC 6642212 ENCODE Processing Pipeline 0fe835e1a2a762f37b4c534280b1ceb9 https://www.encodeproject.org/files/ENCFF702QGM/@@download/ENCFF702QGM.bed.gz GRCh38 released borderline replicate concordance ENCFF023UIB bigBed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF702QGM 11423253 ENCODE Processing Pipeline 4221d5bc3f0a85f16de72eaf8a01e200 https://www.encodeproject.org/files/ENCFF023UIB/@@download/ENCFF023UIB.bigBed GRCh38 released borderline replicate concordance ENCFF875ZVY bigBed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF963RIK 11464076 ENCODE Processing Pipeline 67dc70495eea25a82f60878ac16e0398 https://www.encodeproject.org/files/ENCFF875ZVY/@@download/ENCFF875ZVY.bigBed GRCh38 released borderline replicate concordance ENCFF963RIK bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF476CCE, ENCFF949KJV, ENCFF950AXC 7208785 ENCODE Processing Pipeline 2922456a6a9e53308f02a08b36ad8dca https://www.encodeproject.org/files/ENCFF963RIK/@@download/ENCFF963RIK.bed.gz GRCh38 released borderline replicate concordance ENCFF545ZUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF099SQG 87985 ENCODE Processing Pipeline 676b1474877f0b2798ed58cbd39db892 https://www.encodeproject.org/files/ENCFF545ZUZ/@@download/ENCFF545ZUZ.bigBed GRCh38 released borderline replicate concordance ENCFF616WXJ bed narrowPeak optimal idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF533DMT, ENCFF702QGM, ENCFF963RIK 29131 ENCODE Processing Pipeline 5a30f8398cf9bf8b22b70c7376f96615 https://www.encodeproject.org/files/ENCFF616WXJ/@@download/ENCFF616WXJ.bed.gz GRCh38 released borderline replicate concordance ENCFF735SEB bam unfiltered alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 100 ENCFF110AZC, ENCFF481UNM, ENCFF807MUK 6254500022 ENCODE Processing Pipeline 80ac5201fd5230a01822ffb435a1a94e https://www.encodeproject.org/files/ENCFF735SEB/@@download/ENCFF735SEB.bam hg19 released borderline replicate concordance ENCFF323ITJ bam unfiltered alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 100 ENCFF807MUK, ENCFF906JOB, ENCFF992YHZ 7749820093 ENCODE Processing Pipeline 6ebdde7f85f5ffb1fe46f4feb92ed0a2 https://www.encodeproject.org/files/ENCFF323ITJ/@@download/ENCFF323ITJ.bam hg19 released borderline replicate concordance ENCFF221MEC bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 100 ENCFF110AZC, ENCFF481UNM, ENCFF807MUK 5254508089 ENCODE Processing Pipeline d4eb0100259cc554d4b690ac014b4663 https://www.encodeproject.org/files/ENCFF221MEC/@@download/ENCFF221MEC.bam hg19 released borderline replicate concordance ENCFF316MDQ bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 100 ENCFF807MUK, ENCFF906JOB, ENCFF992YHZ 6616495201 ENCODE Processing Pipeline 2af9514a6cbb7bf321bb93e5de34c251 https://www.encodeproject.org/files/ENCFF316MDQ/@@download/ENCFF316MDQ.bam hg19 released borderline replicate concordance ENCFF462UEP bigWig signal p-value ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF221MEC, ENCFF449NNE 1219521867 ENCODE Processing Pipeline a303c2e8f7e2dd993ab4f99b87e72fe2 https://www.encodeproject.org/files/ENCFF462UEP/@@download/ENCFF462UEP.bigWig hg19 released borderline replicate concordance ENCFF133FQC bigWig signal p-value ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 1646457026 ENCODE Processing Pipeline 303ceb1b9b270201fbf33f7f4c9e411b https://www.encodeproject.org/files/ENCFF133FQC/@@download/ENCFF133FQC.bigWig hg19 released borderline replicate concordance ENCFF480ZKK bigWig signal p-value ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF221MEC, ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 2026566306 ENCODE Processing Pipeline cf3d2cafd47b1a93a20375b240e10d01 https://www.encodeproject.org/files/ENCFF480ZKK/@@download/ENCFF480ZKK.bigWig hg19 released borderline replicate concordance ENCFF961SSY bigWig fold change over control ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF221MEC, ENCFF449NNE 1262604771 ENCODE Processing Pipeline 89cc89ae2d7a249e9febf639ebe5dede https://www.encodeproject.org/files/ENCFF961SSY/@@download/ENCFF961SSY.bigWig hg19 released borderline replicate concordance ENCFF672NVU bigWig fold change over control ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 1819963639 ENCODE Processing Pipeline 74598daabf6107f0136134a2b3d666b9 https://www.encodeproject.org/files/ENCFF672NVU/@@download/ENCFF672NVU.bigWig hg19 released borderline replicate concordance ENCFF433RDR bigWig fold change over control ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF221MEC, ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 2307439175 ENCODE Processing Pipeline 372d6fd5b383d68874f6de290523527d https://www.encodeproject.org/files/ENCFF433RDR/@@download/ENCFF433RDR.bigWig hg19 released borderline replicate concordance ENCFF330VVZ bigBed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF409LKX 11350162 ENCODE Processing Pipeline 4e888d5bcebb10e841e2822b0c8337e5 https://www.encodeproject.org/files/ENCFF330VVZ/@@download/ENCFF330VVZ.bigBed hg19 released borderline replicate concordance ENCFF052PJB bigBed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF078MLZ 11394394 ENCODE Processing Pipeline 335f3e31388fbdf2d38abe7cbd95d8a1 https://www.encodeproject.org/files/ENCFF052PJB/@@download/ENCFF052PJB.bigBed hg19 released borderline replicate concordance ENCFF409LKX bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF221MEC, ENCFF449NNE 5893692 ENCODE Processing Pipeline 269b18f035b2f437d5a86ad57d2d73ba https://www.encodeproject.org/files/ENCFF409LKX/@@download/ENCFF409LKX.bed.gz hg19 released borderline replicate concordance ENCFF078MLZ bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 6634715 ENCODE Processing Pipeline 951a881a87ac93ec1bf525e4001051bd https://www.encodeproject.org/files/ENCFF078MLZ/@@download/ENCFF078MLZ.bed.gz hg19 released borderline replicate concordance ENCFF469FRK bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF221MEC, ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 7199254 ENCODE Processing Pipeline 5317f138b434ebbae2355b6f5ad3dc26 https://www.encodeproject.org/files/ENCFF469FRK/@@download/ENCFF469FRK.bed.gz hg19 released borderline replicate concordance ENCFF357FTD bed narrowPeak conservative idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF078MLZ, ENCFF409LKX, ENCFF469FRK 10197 ENCODE Processing Pipeline 0fa26ed85407cbfa3a82c2d61ac86a5d https://www.encodeproject.org/files/ENCFF357FTD/@@download/ENCFF357FTD.bed.gz hg19 released borderline replicate concordance ENCFF272CDM bigBed narrowPeak conservative idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF357FTD 68365 ENCODE Processing Pipeline 055c64e969c08030a5936da7780712b6 https://www.encodeproject.org/files/ENCFF272CDM/@@download/ENCFF272CDM.bigBed hg19 released borderline replicate concordance ENCFF855TWY bigBed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF469FRK 11455531 ENCODE Processing Pipeline 6280987ccc20579181bd8c6563e7502e https://www.encodeproject.org/files/ENCFF855TWY/@@download/ENCFF855TWY.bigBed hg19 released borderline replicate concordance ENCFF808WQI bed narrowPeak optimal idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF078MLZ, ENCFF409LKX, ENCFF469FRK 24535 ENCODE Processing Pipeline 0abe74aad8be20ae1d2cdd97ab5fb152 https://www.encodeproject.org/files/ENCFF808WQI/@@download/ENCFF808WQI.bed.gz hg19 released borderline replicate concordance ENCFF482BMY bigBed narrowPeak optimal idr thresholded peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF808WQI 91832 ENCODE Processing Pipeline e9a5bff34818a2b1458be26697a71b99 https://www.encodeproject.org/files/ENCFF482BMY/@@download/ENCFF482BMY.bigBed hg19 released borderline replicate concordance ENCFF081KQF fastq reads ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 1 101 paired-ended 1 ENCFF763MGN 2577809642 Michael Snyder, Stanford 5da36796cc0769a5bb7cd3a849c48b19 SRA:SRR6212875 https://www.encodeproject.org/files/ENCFF081KQF/@@download/ENCFF081KQF.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF201QVE fastq reads ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 1 101 paired-ended 1 ENCFF904BBB 2684806825 Michael Snyder, Stanford 977b6e3cbf02c8372f8413639952ccfe SRA:SRR6212876 https://www.encodeproject.org/files/ENCFF201QVE/@@download/ENCFF201QVE.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF763MGN fastq reads ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 1 101 paired-ended 2 ENCFF081KQF 3053489190 Michael Snyder, Stanford e585da7db1e6b332879b10b1f14a8863 SRA:SRR6212875 https://www.encodeproject.org/files/ENCFF763MGN/@@download/ENCFF763MGN.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF904BBB fastq reads ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 1 101 paired-ended 2 ENCFF201QVE 3226737914 Michael Snyder, Stanford 4d26b39a2c11dd1329f401132f08f434 SRA:SRR6212876 https://www.encodeproject.org/files/ENCFF904BBB/@@download/ENCFF904BBB.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF060AYO bam unfiltered alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF201QVE, ENCFF807MUK, ENCFF904BBB 5890540815 ENCODE Processing Pipeline ca27b9d6a523b615bdf53ae88a7143fa https://www.encodeproject.org/files/ENCFF060AYO/@@download/ENCFF060AYO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF065BIT bam unfiltered alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF081KQF, ENCFF763MGN, ENCFF807MUK 5597175684 ENCODE Processing Pipeline 657b2107a2ea04faf9005459565e2189 https://www.encodeproject.org/files/ENCFF065BIT/@@download/ENCFF065BIT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF619MNG bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF081KQF, ENCFF763MGN, ENCFF807MUK 4536980931 ENCODE Processing Pipeline 570c873d087fe1697506b3b783f77422 https://www.encodeproject.org/files/ENCFF619MNG/@@download/ENCFF619MNG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF322EJB bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF201QVE, ENCFF807MUK, ENCFF904BBB 4694441801 ENCODE Processing Pipeline 90853cf8bf853fcf419214bc75f3e44e https://www.encodeproject.org/files/ENCFF322EJB/@@download/ENCFF322EJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF804UMZ bam unfiltered alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF081KQF, ENCFF643CGH, ENCFF763MGN 5609357539 ENCODE Processing Pipeline 81235a5376965eb172da9ae396e9e680 https://www.encodeproject.org/files/ENCFF804UMZ/@@download/ENCFF804UMZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF581DEV bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF081KQF, ENCFF643CGH, ENCFF763MGN 4539409249 ENCODE Processing Pipeline 3de13b0ee8abcf77c2cd5e66e50c073d https://www.encodeproject.org/files/ENCFF581DEV/@@download/ENCFF581DEV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF046YKG bam unfiltered alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF201QVE, ENCFF643CGH, ENCFF904BBB 5903039354 ENCODE Processing Pipeline 544bb2db0f5f584408982ac6bb284b28 https://www.encodeproject.org/files/ENCFF046YKG/@@download/ENCFF046YKG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF899LDZ bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF201QVE, ENCFF643CGH, ENCFF904BBB 4697019833 ENCODE Processing Pipeline f93e502c3523ae7cf52ad6954717e213 https://www.encodeproject.org/files/ENCFF899LDZ/@@download/ENCFF899LDZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF572NWI bigWig signal p-value ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF581DEV, ENCFF810LLR 1317557077 ENCODE Processing Pipeline 8f0c4e6312a60f3b0e4bdb35284cb497 https://www.encodeproject.org/files/ENCFF572NWI/@@download/ENCFF572NWI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF334JNO bigWig fold change over control ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF581DEV, ENCFF810LLR 1648979476 ENCODE Processing Pipeline 8fec9072d96c69cbf3ef7f24d3e65281 https://www.encodeproject.org/files/ENCFF334JNO/@@download/ENCFF334JNO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF013HYE bigWig signal p-value ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF810LLR, ENCFF899LDZ 1694423959 ENCODE Processing Pipeline 8f34f615ce39304718c53af901f535e1 https://www.encodeproject.org/files/ENCFF013HYE/@@download/ENCFF013HYE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF003RQO bigWig signal p-value ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF581DEV, ENCFF810LLR, ENCFF899LDZ 1957430117 ENCODE Processing Pipeline fbadc2e7be1feb90ef05b9b0baf0cc0c https://www.encodeproject.org/files/ENCFF003RQO/@@download/ENCFF003RQO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF966HJH bigBed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF057EOD 11143852 ENCODE Processing Pipeline 91fc646f906c1cbf0a46f4b910d32a22 https://www.encodeproject.org/files/ENCFF966HJH/@@download/ENCFF966HJH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF242CWQ bigBed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF923VAR 11183062 ENCODE Processing Pipeline e0329374e5121de1e9d486b794b53d12 https://www.encodeproject.org/files/ENCFF242CWQ/@@download/ENCFF242CWQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF715VBE bed narrowPeak conservative idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF057EOD, ENCFF419RSJ, ENCFF876VKI, ENCFF923VAR 27374 ENCODE Processing Pipeline 1862af3b03c06468087e67e430b6cd59 https://www.encodeproject.org/files/ENCFF715VBE/@@download/ENCFF715VBE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF812VQP bigBed narrowPeak optimal idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF673JLB 119770 ENCODE Processing Pipeline 34e12d58ec8c3de6046d5761dd59db95 https://www.encodeproject.org/files/ENCFF812VQP/@@download/ENCFF812VQP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF057EOD bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF581DEV, ENCFF810LLR 6528561 ENCODE Processing Pipeline 3e2b3a8d17ee0e61a0bf8fec9ecff3f7 https://www.encodeproject.org/files/ENCFF057EOD/@@download/ENCFF057EOD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF498KOX bigWig fold change over control ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF810LLR, ENCFF899LDZ 1640170291 ENCODE Processing Pipeline 63e93d2fab1e6e210c4630b757160c98 https://www.encodeproject.org/files/ENCFF498KOX/@@download/ENCFF498KOX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF923VAR bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF810LLR, ENCFF899LDZ 6472870 ENCODE Processing Pipeline 6648829257276b8f2b812f43ce26bf0d https://www.encodeproject.org/files/ENCFF923VAR/@@download/ENCFF923VAR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF876VKI bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF581DEV, ENCFF810LLR, ENCFF899LDZ 7243924 ENCODE Processing Pipeline 9d5470eaa7aa518ee5acf6e6e326a105 https://www.encodeproject.org/files/ENCFF876VKI/@@download/ENCFF876VKI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF673JLB bed narrowPeak optimal idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF057EOD, ENCFF419RSJ, ENCFF876VKI, ENCFF923VAR 40060 ENCODE Processing Pipeline 5ed7c9d5f19321d6b3e2ffe5109a4b6e https://www.encodeproject.org/files/ENCFF673JLB/@@download/ENCFF673JLB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF688WRA bigWig fold change over control ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF581DEV, ENCFF810LLR, ENCFF899LDZ 2251195116 ENCODE Processing Pipeline 66e62c6e09c13b83bd0a412e33292f88 https://www.encodeproject.org/files/ENCFF688WRA/@@download/ENCFF688WRA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF894NRO bigBed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF876VKI 11363104 ENCODE Processing Pipeline 7ff6db46ddef0df3102e9afb11955e36 https://www.encodeproject.org/files/ENCFF894NRO/@@download/ENCFF894NRO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF082PCP bigBed narrowPeak conservative idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF715VBE 100526 ENCODE Processing Pipeline ddae85c29ecb677bac84199ffe51f7ac https://www.encodeproject.org/files/ENCFF082PCP/@@download/ENCFF082PCP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF324QXH bigWig fold change over control ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF182WHU, ENCFF322EJB, ENCFF619MNG 2244854250 ENCODE Processing Pipeline fb803539674e40b0450c0d1b1e8084b6 https://www.encodeproject.org/files/ENCFF324QXH/@@download/ENCFF324QXH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF305BMS bigWig signal p-value ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF322EJB 1244745933 ENCODE Processing Pipeline 085ce62e32ce56f06a06f127f5c197f9 https://www.encodeproject.org/files/ENCFF305BMS/@@download/ENCFF305BMS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF781CDG bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF182WHU, ENCFF619MNG 6521915 ENCODE Processing Pipeline dc36a4261736582707dd885f10613319 https://www.encodeproject.org/files/ENCFF781CDG/@@download/ENCFF781CDG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF084FUN bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF182WHU, ENCFF322EJB, ENCFF619MNG 7238904 ENCODE Processing Pipeline 30e3799a362178b66ed94ffa7a36f77f https://www.encodeproject.org/files/ENCFF084FUN/@@download/ENCFF084FUN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF376XVY bigBed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF084FUN 11344604 ENCODE Processing Pipeline 0ca9111e29bb1139a5aa496dc2a91e0d https://www.encodeproject.org/files/ENCFF376XVY/@@download/ENCFF376XVY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF333PHT bed narrowPeak optimal idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF084FUN, ENCFF696TNJ, ENCFF781CDG 38238 ENCODE Processing Pipeline d27d77ad8c6434edfbc66063c9d195bf https://www.encodeproject.org/files/ENCFF333PHT/@@download/ENCFF333PHT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF792UDY bigWig fold change over control ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF182WHU, ENCFF619MNG 1650418502 ENCODE Processing Pipeline 337c8e1503ea83b8326f105ac29230dc https://www.encodeproject.org/files/ENCFF792UDY/@@download/ENCFF792UDY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF208DPC bigWig signal p-value ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF182WHU, ENCFF619MNG 1664603968 ENCODE Processing Pipeline c4f7a87ad9f42c6e87b6afee71c116d5 https://www.encodeproject.org/files/ENCFF208DPC/@@download/ENCFF208DPC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF113DYN bigWig fold change over control ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF322EJB 1632345630 ENCODE Processing Pipeline 648daad68acf00b983c69974f89c07e8 https://www.encodeproject.org/files/ENCFF113DYN/@@download/ENCFF113DYN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF422HYS bed narrowPeak conservative idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF084FUN, ENCFF696TNJ, ENCFF781CDG 26278 ENCODE Processing Pipeline 92504afdd476f98f9b365f39a75bedf9 https://www.encodeproject.org/files/ENCFF422HYS/@@download/ENCFF422HYS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF624FZG bigWig signal p-value ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF182WHU, ENCFF322EJB, ENCFF619MNG 1954595391 ENCODE Processing Pipeline a846995964cca8742d573082d616f33c https://www.encodeproject.org/files/ENCFF624FZG/@@download/ENCFF624FZG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF249QYS bigBed narrowPeak conservative idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF422HYS 97073 ENCODE Processing Pipeline afcc9d188eeac41bcc54c0cb8f06b85e https://www.encodeproject.org/files/ENCFF249QYS/@@download/ENCFF249QYS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF954IGY bigBed narrowPeak optimal idr thresholded peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF333PHT 115065 ENCODE Processing Pipeline 8055e686ed673c9a8e27e333f9ec1c2f https://www.encodeproject.org/files/ENCFF954IGY/@@download/ENCFF954IGY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF696TNJ bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF322EJB 6471149 ENCODE Processing Pipeline 308113e210b31b6a4068934e5fa36619 https://www.encodeproject.org/files/ENCFF696TNJ/@@download/ENCFF696TNJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF704FCY bigBed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF781CDG 11117662 ENCODE Processing Pipeline 5d675ea156802b006e45ab9ead868af9 https://www.encodeproject.org/files/ENCFF704FCY/@@download/ENCFF704FCY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF032CPO bigBed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF696TNJ 11162263 ENCODE Processing Pipeline 254f2629feb784c9e8c5834c62d7ab57 https://www.encodeproject.org/files/ENCFF032CPO/@@download/ENCFF032CPO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF000XQV bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VKC 2442576 Michael Snyder, Stanford b79f57e1cdb367a0806397ec67c2c262 https://www.encodeproject.org/files/ENCFF000XQV/@@download/ENCFF000XQV.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQW fastq reads ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1076779136 Michael Snyder, Stanford 599b646ee0427a3c8aefd82e9be6d2be https://www.encodeproject.org/files/ENCFF000XQW/@@download/ENCFF000XQW.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQY fastq reads ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1081511834 Michael Snyder, Stanford 39ed57ef9f23d29a13e4656aa2db60db https://www.encodeproject.org/files/ENCFF000XQY/@@download/ENCFF000XQY.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XRA bigWig signal ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 424276303 Michael Snyder, Stanford 5e56a4751ff551cc76a83035c070f5c6 https://www.encodeproject.org/files/ENCFF000XRA/@@download/ENCFF000XRA.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XRB bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 560070083 Michael Snyder, Stanford d0a4bae6c828d2bb7a66e63955ab13d1 https://www.encodeproject.org/files/ENCFF000XRB/@@download/ENCFF000XRB.bam hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XRC bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 562930918 Michael Snyder, Stanford c88b542bac11314faa9d04bbfca4b459 https://www.encodeproject.org/files/ENCFF000XRC/@@download/ENCFF000XRC.bam hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VKC bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 906437 Michael Snyder, Stanford 10ebca2438070ad1d444e42c7d35b507 https://www.encodeproject.org/files/ENCFF001VKC/@@download/ENCFF001VKC.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CTZ bed narrowPeak optimal idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 141990 ENCODE Consortium Analysis Working Group 330d3aba535dd65dec36da67b6cf22f3 https://www.encodeproject.org/files/ENCFF002CTZ/@@download/ENCFF002CTZ.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF646IKV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CTZ 380319 ENCODE Consortium ca1dffdc70376b22a53e0ee06e47acc5 https://www.encodeproject.org/files/ENCFF646IKV/@@download/ENCFF646IKV.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF387LRB bam unfiltered alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XQW, ENCFF643CGH 1251455266 ENCODE Processing Pipeline 2804f62c8d2c9266b86040b38eef905e https://www.encodeproject.org/files/ENCFF387LRB/@@download/ENCFF387LRB.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF353CSF bam unfiltered alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQY, ENCFF643CGH 1255363156 ENCODE Processing Pipeline 7ec3ef8fff5835233853b7c135373c2f https://www.encodeproject.org/files/ENCFF353CSF/@@download/ENCFF353CSF.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF807TIN bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XQW, ENCFF643CGH 877151848 ENCODE Processing Pipeline cd51bd94ea6dba690a25d8be2bed225b https://www.encodeproject.org/files/ENCFF807TIN/@@download/ENCFF807TIN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF535OVY bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQY, ENCFF643CGH 888504025 ENCODE Processing Pipeline 7328c42ef5e90a27e8ff216a83530c9b https://www.encodeproject.org/files/ENCFF535OVY/@@download/ENCFF535OVY.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF038DTA bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XQW, ENCFF807MUK 877566076 ENCODE Processing Pipeline 2917d615642419876b08dce7eda06d60 https://www.encodeproject.org/files/ENCFF038DTA/@@download/ENCFF038DTA.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF221HET bam unfiltered alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XQW, ENCFF807MUK 1245897271 ENCODE Processing Pipeline 7730569fc043efc96fd2d709004b9e2a https://www.encodeproject.org/files/ENCFF221HET/@@download/ENCFF221HET.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF214ALX bam unfiltered alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQY, ENCFF807MUK 1249458530 ENCODE Processing Pipeline 53ce99f31d3b8ffdb90713827ce93ffa https://www.encodeproject.org/files/ENCFF214ALX/@@download/ENCFF214ALX.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF751LSF bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQY, ENCFF807MUK 888914959 ENCODE Processing Pipeline 1559246cf5d90dfe12fba393291121c4 https://www.encodeproject.org/files/ENCFF751LSF/@@download/ENCFF751LSF.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF274QOF bigWig signal p-value ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF807TIN 553337626 ENCODE Processing Pipeline 870d2b23866ee28f3bb7b96383787cf2 https://www.encodeproject.org/files/ENCFF274QOF/@@download/ENCFF274QOF.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF252MHS bigWig signal p-value ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF535OVY 706056116 ENCODE Processing Pipeline 9bf4861484ffc97ba654629ccfdcdd33 https://www.encodeproject.org/files/ENCFF252MHS/@@download/ENCFF252MHS.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF076LAX bigWig fold change over control ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF807TIN 460355487 ENCODE Processing Pipeline b5993f470c197c1434642dcf966cbc28 https://www.encodeproject.org/files/ENCFF076LAX/@@download/ENCFF076LAX.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF815RPX bigWig fold change over control ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF535OVY 471983490 ENCODE Processing Pipeline f760bbe8cd7622caeafc68b93b27ff90 https://www.encodeproject.org/files/ENCFF815RPX/@@download/ENCFF815RPX.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF433MIW bigWig signal p-value ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF535OVY, ENCFF807TIN 712376695 ENCODE Processing Pipeline 1cfec975ad874a49a580192a00bb69ec https://www.encodeproject.org/files/ENCFF433MIW/@@download/ENCFF433MIW.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF676OWO bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF807TIN 5534481 ENCODE Processing Pipeline 2da311ed869f51e0a9bd21bb42e5ee52 https://www.encodeproject.org/files/ENCFF676OWO/@@download/ENCFF676OWO.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF941ZDS bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF535OVY, ENCFF807TIN 2691702 ENCODE Processing Pipeline f71265c3e5e9a04e4b28da13b7fd1cc7 https://www.encodeproject.org/files/ENCFF941ZDS/@@download/ENCFF941ZDS.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF085SFU bigWig fold change over control ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF165KZY, ENCFF535OVY, ENCFF807TIN 786314285 ENCODE Processing Pipeline fb5a7bd270bb085c1b667cd8264ef875 https://www.encodeproject.org/files/ENCFF085SFU/@@download/ENCFF085SFU.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF981IMV bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF941ZDS 5601453 ENCODE Processing Pipeline ce7ebc6ef3b2bbd32e25873c9e935b3e https://www.encodeproject.org/files/ENCFF981IMV/@@download/ENCFF981IMV.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF924LSZ bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF535OVY 5104506 ENCODE Processing Pipeline 6229934821bade7c85c0d1602ecdef5b https://www.encodeproject.org/files/ENCFF924LSZ/@@download/ENCFF924LSZ.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF804EZP bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF924LSZ 11088758 ENCODE Processing Pipeline 28c3aee8a2a2c4743e47093f851d31c4 https://www.encodeproject.org/files/ENCFF804EZP/@@download/ENCFF804EZP.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF987VKU bed narrowPeak optimal idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF676OWO, ENCFF924LSZ, ENCFF941ZDS 100680 ENCODE Processing Pipeline f5df183c81c70bd292437e68facfb15d https://www.encodeproject.org/files/ENCFF987VKU/@@download/ENCFF987VKU.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF361QIR bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF676OWO 13238080 ENCODE Processing Pipeline 5cf3537949eca9a1d426f114dfd83f1e https://www.encodeproject.org/files/ENCFF361QIR/@@download/ENCFF361QIR.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF029ILB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF885XWO 225436 ENCODE Processing Pipeline 66307f416de478292c3419019dd202b4 https://www.encodeproject.org/files/ENCFF029ILB/@@download/ENCFF029ILB.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF885XWO bed narrowPeak conservative idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF676OWO, ENCFF924LSZ, ENCFF941ZDS 92564 ENCODE Processing Pipeline 52827b3e113baf0aba119a6cbfd944ff https://www.encodeproject.org/files/ENCFF885XWO/@@download/ENCFF885XWO.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF601ZUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF987VKU 238179 ENCODE Processing Pipeline c43e0438a07b3a274416998dc7216bf8 https://www.encodeproject.org/files/ENCFF601ZUZ/@@download/ENCFF601ZUZ.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF273QVC bigWig fold change over control ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF038DTA, ENCFF107SKX 468263945 ENCODE Processing Pipeline e950470c199a58162a0392c44a66cabf https://www.encodeproject.org/files/ENCFF273QVC/@@download/ENCFF273QVC.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF119GVR bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038DTA, ENCFF107SKX, ENCFF751LSF 2726862 ENCODE Processing Pipeline 6aeed82f51aa73ea0317e473f638215f https://www.encodeproject.org/files/ENCFF119GVR/@@download/ENCFF119GVR.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF706RIA bed narrowPeak optimal idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF119GVR, ENCFF531FFM, ENCFF827IXZ 101271 ENCODE Processing Pipeline 6d0a14b130b1f915375be8647eed081c https://www.encodeproject.org/files/ENCFF706RIA/@@download/ENCFF706RIA.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF831RTW bigWig signal p-value ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038DTA, ENCFF107SKX, ENCFF751LSF 757101231 ENCODE Processing Pipeline 17b6b05bd7d05d368164472b4bbbe988 https://www.encodeproject.org/files/ENCFF831RTW/@@download/ENCFF831RTW.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF531FFM bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF751LSF 5126375 ENCODE Processing Pipeline 342037da70c0419ae21d4af373a10d40 https://www.encodeproject.org/files/ENCFF531FFM/@@download/ENCFF531FFM.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF731HYD bigWig fold change over control ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038DTA, ENCFF107SKX, ENCFF751LSF 803020186 ENCODE Processing Pipeline 20f735b0834336b1493332848efc701f https://www.encodeproject.org/files/ENCFF731HYD/@@download/ENCFF731HYD.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF412FEV bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF531FFM 11092540 ENCODE Processing Pipeline 8ce7694c38cc6fb80c271476b820d1b4 https://www.encodeproject.org/files/ENCFF412FEV/@@download/ENCFF412FEV.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF107OFS bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF119GVR 5652791 ENCODE Processing Pipeline 5ce160f4def1066229deeff784d65b70 https://www.encodeproject.org/files/ENCFF107OFS/@@download/ENCFF107OFS.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF707FHG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF706RIA 238089 ENCODE Processing Pipeline 5f8ed2405e781e568eedaf0052264096 https://www.encodeproject.org/files/ENCFF707FHG/@@download/ENCFF707FHG.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF470UBX bigWig signal p-value ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF751LSF 613379912 ENCODE Processing Pipeline 51e99695f283c4a3904caf9b07ec1c02 https://www.encodeproject.org/files/ENCFF470UBX/@@download/ENCFF470UBX.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF009JZL bigWig fold change over control ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF751LSF 468881580 ENCODE Processing Pipeline fbe48d91b6feb456a5b8d620fdbd338a https://www.encodeproject.org/files/ENCFF009JZL/@@download/ENCFF009JZL.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF068LEI bigBed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF827IXZ 13216894 ENCODE Processing Pipeline 4d545ae03c64e8395b6786dddf51d3dd https://www.encodeproject.org/files/ENCFF068LEI/@@download/ENCFF068LEI.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF612WCU bigWig signal p-value ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF038DTA, ENCFF107SKX 521091674 ENCODE Processing Pipeline 6da47454afe14aff45778950331b2030 https://www.encodeproject.org/files/ENCFF612WCU/@@download/ENCFF612WCU.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF827IXZ bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF038DTA, ENCFF107SKX 5588175 ENCODE Processing Pipeline f69a17eb084307428fc3d15a8b069dcb https://www.encodeproject.org/files/ENCFF827IXZ/@@download/ENCFF827IXZ.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF298ESK bed narrowPeak conservative idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF119GVR, ENCFF531FFM, ENCFF827IXZ 93298 ENCODE Processing Pipeline bd3c1280a52d6fd16f82b937060f3527 https://www.encodeproject.org/files/ENCFF298ESK/@@download/ENCFF298ESK.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF600FKQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298ESK 226339 ENCODE Processing Pipeline 26234fbdd42e30e9861b697619ad3136 https://www.encodeproject.org/files/ENCFF600FKQ/@@download/ENCFF600FKQ.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF135WKL fastq reads ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 613238750 Xiang-Dong Fu, UCSD 8305ac9a298b3313d24fc96f7e5834ff https://www.encodeproject.org/files/ENCFF135WKL/@@download/ENCFF135WKL.fastq.gz Illumina HiSeq 2500 /files/ENCFF521UDO/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF228GOX fastq reads ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 550173484 Xiang-Dong Fu, UCSD c99ef0f7cbf3e73ff1f0fd0e446332d6 https://www.encodeproject.org/files/ENCFF228GOX/@@download/ENCFF228GOX.fastq.gz Illumina HiSeq 2500 /files/ENCFF343MYT/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF937ONB bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF228GOX, ENCFF807MUK 501490274 ENCODE Processing Pipeline 5bae9d2ff7f1e8b4434cd944cd9fa4f7 https://www.encodeproject.org/files/ENCFF937ONB/@@download/ENCFF937ONB.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF164HNV bam unfiltered alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF228GOX, ENCFF807MUK 765767134 ENCODE Processing Pipeline ac937fc250ca3bb1a38e22105dd531ef https://www.encodeproject.org/files/ENCFF164HNV/@@download/ENCFF164HNV.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF908KFH bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF135WKL, ENCFF807MUK 582824748 ENCODE Processing Pipeline cb818bf8f44ff5ec46015a2325d8d6ee https://www.encodeproject.org/files/ENCFF908KFH/@@download/ENCFF908KFH.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF564MXL bam unfiltered alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF135WKL, ENCFF807MUK 846802932 ENCODE Processing Pipeline 8a7fb13774423d78921c605a772b77d3 https://www.encodeproject.org/files/ENCFF564MXL/@@download/ENCFF564MXL.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF508UZH bam unfiltered alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF135WKL, ENCFF643CGH 850033865 ENCODE Processing Pipeline beea2069bfcad0fc5cb2ab63b1d90c5c https://www.encodeproject.org/files/ENCFF508UZH/@@download/ENCFF508UZH.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF377YBU bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF135WKL, ENCFF643CGH 582156435 ENCODE Processing Pipeline 4c2e04b243e19e38054eed323595b6a1 https://www.encodeproject.org/files/ENCFF377YBU/@@download/ENCFF377YBU.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF112WOA bam unfiltered alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF228GOX, ENCFF643CGH 767843875 ENCODE Processing Pipeline f5e52167b443fb1219aa3c64d2042576 https://www.encodeproject.org/files/ENCFF112WOA/@@download/ENCFF112WOA.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF751EVN bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF228GOX, ENCFF643CGH 500794078 ENCODE Processing Pipeline d491b26000e2255e479a14c4f954dcf9 https://www.encodeproject.org/files/ENCFF751EVN/@@download/ENCFF751EVN.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF739APB bigWig signal p-value ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF937ONB, ENCFF993VCM 520548522 ENCODE Processing Pipeline 34d79f0746e5f49b04c9a9de023f6d44 https://www.encodeproject.org/files/ENCFF739APB/@@download/ENCFF739APB.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF599ZUM bigWig signal p-value ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF177GKX, ENCFF908KFH, ENCFF937ONB, ENCFF993VCM 1035549549 ENCODE Processing Pipeline 8737c02ea89d7903cf371f4eed1bff52 https://www.encodeproject.org/files/ENCFF599ZUM/@@download/ENCFF599ZUM.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF415VFS bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF177GKX, ENCFF908KFH 5026604 ENCODE Processing Pipeline 8e5f7c10cc85b739677753af635c01be https://www.encodeproject.org/files/ENCFF415VFS/@@download/ENCFF415VFS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF952MFS bigBed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF677EHH 13611720 ENCODE Processing Pipeline 2b38e7f040c8bcbf863a9aa823b4cbe6 https://www.encodeproject.org/files/ENCFF952MFS/@@download/ENCFF952MFS.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF792LFJ bigBed narrowPeak conservative idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF189QCJ 171115 ENCODE Processing Pipeline fe94c4d6b385bc5c8a59c0f0b01959a0 https://www.encodeproject.org/files/ENCFF792LFJ/@@download/ENCFF792LFJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF032QDH bigBed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF297NXF 11069873 ENCODE Processing Pipeline 95714ebbfb35e3cffc2a565d67178b8b https://www.encodeproject.org/files/ENCFF032QDH/@@download/ENCFF032QDH.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF189QCJ bed narrowPeak conservative idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF297NXF, ENCFF415VFS, ENCFF677EHH 71658 ENCODE Processing Pipeline b3cac79687cb5451811966140ed41855 https://www.encodeproject.org/files/ENCFF189QCJ/@@download/ENCFF189QCJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF478MPX bed narrowPeak optimal idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF297NXF, ENCFF415VFS, ENCFF677EHH 103463 ENCODE Processing Pipeline 9fb7ae5d6f5c3136f59945fe5c9a510c https://www.encodeproject.org/files/ENCFF478MPX/@@download/ENCFF478MPX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF444EXX bigBed narrowPeak optimal idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF478MPX 258629 ENCODE Processing Pipeline 63ba7e218bf654d65b4c7eda1f9cfcff https://www.encodeproject.org/files/ENCFF444EXX/@@download/ENCFF444EXX.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF867CUF bigWig fold change over control ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF937ONB, ENCFF993VCM 374769976 ENCODE Processing Pipeline a61bf34d54008b53a3d5366e1532172c https://www.encodeproject.org/files/ENCFF867CUF/@@download/ENCFF867CUF.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF163TQK bigWig fold change over control ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF177GKX, ENCFF908KFH, ENCFF937ONB, ENCFF993VCM 863407489 ENCODE Processing Pipeline 6c1a6a4dec4663c88344a4fc25901e1b https://www.encodeproject.org/files/ENCFF163TQK/@@download/ENCFF163TQK.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF677EHH bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF177GKX, ENCFF908KFH, ENCFF937ONB, ENCFF993VCM 6340399 ENCODE Processing Pipeline c2c8ee0ea76767c46cd9b7309db25e3e https://www.encodeproject.org/files/ENCFF677EHH/@@download/ENCFF677EHH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF614EIC bigBed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF415VFS 11139405 ENCODE Processing Pipeline b254f91c3e317e521a84fa0138262ef6 https://www.encodeproject.org/files/ENCFF614EIC/@@download/ENCFF614EIC.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF468BOJ bigWig signal p-value ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF177GKX, ENCFF908KFH 576853033 ENCODE Processing Pipeline ff1db34351c32ce0e75c7b0ffecfac95 https://www.encodeproject.org/files/ENCFF468BOJ/@@download/ENCFF468BOJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF308BWW bigWig fold change over control ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF177GKX, ENCFF908KFH 393227008 ENCODE Processing Pipeline a50a113853d45794f0d74134f8a0abaa https://www.encodeproject.org/files/ENCFF308BWW/@@download/ENCFF308BWW.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF297NXF bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF937ONB, ENCFF993VCM 5119955 ENCODE Processing Pipeline 44598347b1ae405daae52bef3344bd9b https://www.encodeproject.org/files/ENCFF297NXF/@@download/ENCFF297NXF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF433PJA bigWig signal p-value ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF092OLM, ENCFF377YBU 599337529 ENCODE Processing Pipeline adb3786fa58fc6a9d97ff5ac0c53a74a https://www.encodeproject.org/files/ENCFF433PJA/@@download/ENCFF433PJA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF840ICU bigWig signal p-value ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF584ERB, ENCFF751EVN 592450510 ENCODE Processing Pipeline b3d16bec580ae0b1079182ef517f5a8f https://www.encodeproject.org/files/ENCFF840ICU/@@download/ENCFF840ICU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF088FWS bigWig signal p-value ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF092OLM, ENCFF377YBU, ENCFF584ERB, ENCFF751EVN 950598518 ENCODE Processing Pipeline 66efc92aa331a7d12c5e15d8899c1c1f https://www.encodeproject.org/files/ENCFF088FWS/@@download/ENCFF088FWS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF752EXU bigWig fold change over control ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF092OLM, ENCFF377YBU 394081207 ENCODE Processing Pipeline 4b1ff845d4897676214e3fbc4ebc2612 https://www.encodeproject.org/files/ENCFF752EXU/@@download/ENCFF752EXU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF697GOT bigWig fold change over control ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF584ERB, ENCFF751EVN 373869725 ENCODE Processing Pipeline 51690341f7988485525e1bb58b090f1e https://www.encodeproject.org/files/ENCFF697GOT/@@download/ENCFF697GOT.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF711WLJ bigWig fold change over control ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF092OLM, ENCFF377YBU, ENCFF584ERB, ENCFF751EVN 863002958 ENCODE Processing Pipeline 6a00a01d521bec2c5860b6df4e5a06d6 https://www.encodeproject.org/files/ENCFF711WLJ/@@download/ENCFF711WLJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF328WUR bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF092OLM, ENCFF377YBU 5059318 ENCODE Processing Pipeline 1ffbe2050736c87f3595b2d53606de3f https://www.encodeproject.org/files/ENCFF328WUR/@@download/ENCFF328WUR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF157CME bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF584ERB, ENCFF751EVN 5086051 ENCODE Processing Pipeline fad4b4a343be89fba548bfe49987a5e8 https://www.encodeproject.org/files/ENCFF157CME/@@download/ENCFF157CME.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF428NSD bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF092OLM, ENCFF377YBU, ENCFF584ERB, ENCFF751EVN 6297167 ENCODE Processing Pipeline 7f8df9ed1a335ff40f5e48668bd069c2 https://www.encodeproject.org/files/ENCFF428NSD/@@download/ENCFF428NSD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF592JAD bigBed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF328WUR 11154532 ENCODE Processing Pipeline 4c3d7f2753aae1069b715a9cd66420bd https://www.encodeproject.org/files/ENCFF592JAD/@@download/ENCFF592JAD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF361RLX bigBed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF157CME 11083829 ENCODE Processing Pipeline c37692ac1d0b909d16a25e20895b691d https://www.encodeproject.org/files/ENCFF361RLX/@@download/ENCFF361RLX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF454SGO bigBed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF428NSD 13618797 ENCODE Processing Pipeline 866c2090758ea0ab1a2a6b4c7d841fb2 https://www.encodeproject.org/files/ENCFF454SGO/@@download/ENCFF454SGO.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF063ZIT bed narrowPeak conservative idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF157CME, ENCFF328WUR, ENCFF419RSJ, ENCFF428NSD 70889 ENCODE Processing Pipeline 1959122447667cfd24e56d24dc1ef65c https://www.encodeproject.org/files/ENCFF063ZIT/@@download/ENCFF063ZIT.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF767JNB bigBed narrowPeak conservative idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF063ZIT 171434 ENCODE Processing Pipeline 2006143e76c7ab0c14d683ac9b67c23d https://www.encodeproject.org/files/ENCFF767JNB/@@download/ENCFF767JNB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF411YVY bed narrowPeak optimal idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF157CME, ENCFF328WUR, ENCFF419RSJ, ENCFF428NSD 103479 ENCODE Processing Pipeline 6515f239fea878af719b52d4479c71f1 https://www.encodeproject.org/files/ENCFF411YVY/@@download/ENCFF411YVY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF916WYW bigBed narrowPeak optimal idr thresholded peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF411YVY 259259 ENCODE Processing Pipeline d2fe6cbce08794d147c9ae1c6dcbf860 https://www.encodeproject.org/files/ENCFF916WYW/@@download/ENCFF916WYW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF027BOY fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF661STW 2468564863 Michael Snyder, Stanford e3051987ca006d1352c986aca8d26ca1 SRA:SRR6213381 https://www.encodeproject.org/files/ENCFF027BOY/@@download/ENCFF027BOY.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF661STW fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF027BOY 3074211222 Michael Snyder, Stanford 55d5762a369b53f0d7d571bfb8d0b587 SRA:SRR6213381 https://www.encodeproject.org/files/ENCFF661STW/@@download/ENCFF661STW.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF257GIX fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF296PDU 3822066826 Michael Snyder, Stanford b16c3749b313b5d978cc2f092f4dd964 SRA:SRR6213382 https://www.encodeproject.org/files/ENCFF257GIX/@@download/ENCFF257GIX.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF296PDU fastq reads ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF257GIX 3183953691 Michael Snyder, Stanford 602e88e89d438e125d2ffc9f101bb225 SRA:SRR6213382 https://www.encodeproject.org/files/ENCFF296PDU/@@download/ENCFF296PDU.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF685HCB bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF661STW, ENCFF807MUK 5446565398 ENCODE Processing Pipeline 46fd5491f392150e18d9334b2474e446 https://www.encodeproject.org/files/ENCFF685HCB/@@download/ENCFF685HCB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF780NKT bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF643CGH, ENCFF661STW 5453679216 ENCODE Processing Pipeline b965d562197b26deed07ca7c55e29aeb https://www.encodeproject.org/files/ENCFF780NKT/@@download/ENCFF780NKT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF671NSO bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF807MUK 6505038652 ENCODE Processing Pipeline c98c8f34726b97adbec5712834be8361 https://www.encodeproject.org/files/ENCFF671NSO/@@download/ENCFF671NSO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF816IGR bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF661STW, ENCFF807MUK 4148906793 ENCODE Processing Pipeline 4dec1a2bd7ab69605a7db9c7eb8593b2 https://www.encodeproject.org/files/ENCFF816IGR/@@download/ENCFF816IGR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF215KGT bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF807MUK 4668376996 ENCODE Processing Pipeline 1ef598c20fc6d6e645a45679dac6f470 https://www.encodeproject.org/files/ENCFF215KGT/@@download/ENCFF215KGT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF703ZDY bam unfiltered alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF643CGH 6510596563 ENCODE Processing Pipeline 5384c63a973f000d92ec3f1a8dc9e94a https://www.encodeproject.org/files/ENCFF703ZDY/@@download/ENCFF703ZDY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF427CQP bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF643CGH, ENCFF661STW 4154454376 ENCODE Processing Pipeline 4ff93ec818dabe34ad0a65d6632ff56a https://www.encodeproject.org/files/ENCFF427CQP/@@download/ENCFF427CQP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF531RDZ bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF643CGH 4674488662 ENCODE Processing Pipeline 47d2ee4068cd054db83e23af655d00bc https://www.encodeproject.org/files/ENCFF531RDZ/@@download/ENCFF531RDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF925ZAR bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 1214969645 ENCODE Processing Pipeline 83857aa6fb9fc606635a5b2c391b7fcd https://www.encodeproject.org/files/ENCFF925ZAR/@@download/ENCFF925ZAR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF929QGK bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF215KGT, ENCFF592WAL, ENCFF816IGR, ENCFF901CND 2086094911 ENCODE Processing Pipeline 78e7fa751c69e509b98a49e3e536909a https://www.encodeproject.org/files/ENCFF929QGK/@@download/ENCFF929QGK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF651YYN bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 1435024472 ENCODE Processing Pipeline adc6e15a1f412b24b3c7cba39c994e61 https://www.encodeproject.org/files/ENCFF651YYN/@@download/ENCFF651YYN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF308RFY bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 5961135 ENCODE Processing Pipeline 81d93d6c05d0232c271be38ec82ff8fa https://www.encodeproject.org/files/ENCFF308RFY/@@download/ENCFF308RFY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF649MUM bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF308RFY 11444248 ENCODE Processing Pipeline 24e9af358ec61fdc829a78d4d2161653 https://www.encodeproject.org/files/ENCFF649MUM/@@download/ENCFF649MUM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF747IZZ bed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF082QVO, ENCFF222GJV, ENCFF308RFY 23586 ENCODE Processing Pipeline 5a2b0ca2ff771fe2ac4eba74d772cf86 https://www.encodeproject.org/files/ENCFF747IZZ/@@download/ENCFF747IZZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF896UQP bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 1227234780 ENCODE Processing Pipeline 8bac748131d1430ae7e1a40a54d8f0ef https://www.encodeproject.org/files/ENCFF896UQP/@@download/ENCFF896UQP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF015YHT bed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF082QVO, ENCFF222GJV, ENCFF308RFY 53338 ENCODE Processing Pipeline a8cfce2cd4f95a90ebe3f1b1704ea0a7 https://www.encodeproject.org/files/ENCFF015YHT/@@download/ENCFF015YHT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF082QVO bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF215KGT, ENCFF592WAL, ENCFF816IGR, ENCFF901CND 7109524 ENCODE Processing Pipeline f861d40af9b09d59255a3cd412273cbe https://www.encodeproject.org/files/ENCFF082QVO/@@download/ENCFF082QVO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF737SPF bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 1281054274 ENCODE Processing Pipeline e6628676bdff900bdba6e89ea8ba9371 https://www.encodeproject.org/files/ENCFF737SPF/@@download/ENCFF737SPF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF222GJV bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 5988641 ENCODE Processing Pipeline ef43bf68252988f3222d451c9f68c7a5 https://www.encodeproject.org/files/ENCFF222GJV/@@download/ENCFF222GJV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF954UNS bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF082QVO 11638799 ENCODE Processing Pipeline ae4e0532dd7d8bb015d3f7676d792f27 https://www.encodeproject.org/files/ENCFF954UNS/@@download/ENCFF954UNS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF167BQX bigBed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF747IZZ 98129 ENCODE Processing Pipeline 4b773f67a8932fbfa0a9e3578470cc28 https://www.encodeproject.org/files/ENCFF167BQX/@@download/ENCFF167BQX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF534OEO bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF215KGT, ENCFF592WAL, ENCFF816IGR, ENCFF901CND 2387591928 ENCODE Processing Pipeline 84b90b7d9807ffa7220a5858e69d3e30 https://www.encodeproject.org/files/ENCFF534OEO/@@download/ENCFF534OEO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF659SMR bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF222GJV 11606720 ENCODE Processing Pipeline 4fe641dc06d5abc45b4dfd7485d973a1 https://www.encodeproject.org/files/ENCFF659SMR/@@download/ENCFF659SMR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF291OOO bigBed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF015YHT 143692 ENCODE Processing Pipeline 95f397fa81ecb5634bc003bb45a29153 https://www.encodeproject.org/files/ENCFF291OOO/@@download/ENCFF291OOO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF556EKD bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF322NTO, ENCFF531RDZ 1069987386 ENCODE Processing Pipeline 84542356d5817c44324a55c14edc829d https://www.encodeproject.org/files/ENCFF556EKD/@@download/ENCFF556EKD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF559ZGL bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF322NTO, ENCFF427CQP, ENCFF531RDZ, ENCFF666ATR 1903299777 ENCODE Processing Pipeline c61ee1eaa872620e29b228b376cfd0a0 https://www.encodeproject.org/files/ENCFF559ZGL/@@download/ENCFF559ZGL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF897EDT bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF427CQP, ENCFF666ATR 5959347 ENCODE Processing Pipeline aad2d8d22df82be59dfd34a8646f23fe https://www.encodeproject.org/files/ENCFF897EDT/@@download/ENCFF897EDT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF156ZBF bed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF134DSR, ENCFF419RSJ, ENCFF868UEY, ENCFF897EDT 24524 ENCODE Processing Pipeline 4ccd597996767ec09a3a827052a5a8e0 https://www.encodeproject.org/files/ENCFF156ZBF/@@download/ENCFF156ZBF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF381ZDU bed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF134DSR, ENCFF419RSJ, ENCFF868UEY, ENCFF897EDT 53005 ENCODE Processing Pipeline 45059f90138d40e14c0c5b7302bef7ea https://www.encodeproject.org/files/ENCFF381ZDU/@@download/ENCFF381ZDU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF248FRU bigWig signal p-value ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF427CQP, ENCFF666ATR 1138550331 ENCODE Processing Pipeline 4a77ce31084df6b335802280935e5db5 https://www.encodeproject.org/files/ENCFF248FRU/@@download/ENCFF248FRU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF082JNG bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF322NTO, ENCFF531RDZ 1436235545 ENCODE Processing Pipeline 3dc2bb59232419251a202a6f79f0c29e https://www.encodeproject.org/files/ENCFF082JNG/@@download/ENCFF082JNG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF856LYZ bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF322NTO, ENCFF427CQP, ENCFF531RDZ, ENCFF666ATR 2386479287 ENCODE Processing Pipeline f3258aaad677b82c7e3574aa1cf9f05b https://www.encodeproject.org/files/ENCFF856LYZ/@@download/ENCFF856LYZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF918NZM bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF868UEY 11661368 ENCODE Processing Pipeline 8d86b75793fd4b05e7f9fc36de49cf40 https://www.encodeproject.org/files/ENCFF918NZM/@@download/ENCFF918NZM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF902XDD bigBed narrowPeak conservative idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF156ZBF 101118 ENCODE Processing Pipeline e0a9c02a610401f9688dd65684c8a35b https://www.encodeproject.org/files/ENCFF902XDD/@@download/ENCFF902XDD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF523NQP bigBed narrowPeak optimal idr thresholded peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF381ZDU 144664 ENCODE Processing Pipeline b5213939481072ade756e70adefa1774 https://www.encodeproject.org/files/ENCFF523NQP/@@download/ENCFF523NQP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF664XOX bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF897EDT 11456233 ENCODE Processing Pipeline 6b55a2edf99dbaab0f5b9ff23ea44d0a https://www.encodeproject.org/files/ENCFF664XOX/@@download/ENCFF664XOX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF664OLG bigWig fold change over control ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF427CQP, ENCFF666ATR 1282101113 ENCODE Processing Pipeline 6c8732f61839ea5fac632ce81806e5a5 https://www.encodeproject.org/files/ENCFF664OLG/@@download/ENCFF664OLG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF134DSR bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF322NTO, ENCFF531RDZ 5985375 ENCODE Processing Pipeline 140c7c943827734623047eb0ad7ddfad https://www.encodeproject.org/files/ENCFF134DSR/@@download/ENCFF134DSR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF868UEY bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF322NTO, ENCFF427CQP, ENCFF531RDZ, ENCFF666ATR 7114650 ENCODE Processing Pipeline ecb221b254174c8d10b9622f08dbe353 https://www.encodeproject.org/files/ENCFF868UEY/@@download/ENCFF868UEY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF217OOL bigBed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF134DSR 11620295 ENCODE Processing Pipeline f34768e67fe6e8e929c9088354881d6e https://www.encodeproject.org/files/ENCFF217OOL/@@download/ENCFF217OOL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF706KLP fastq reads ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF669OSV 2321655607 Michael Snyder, Stanford d0a47af02c2f9e716a0f495c4866a753 SRA:SRR6212972 https://www.encodeproject.org/files/ENCFF706KLP/@@download/ENCFF706KLP.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF283GNM fastq reads ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF451RCX 2556230925 Michael Snyder, Stanford 3a08a44c91d96590e743c672138bc02f SRA:SRR6212973 https://www.encodeproject.org/files/ENCFF283GNM/@@download/ENCFF283GNM.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF451RCX fastq reads ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF283GNM 3087194587 Michael Snyder, Stanford 26ec00e585df209220407a95c11d33fa SRA:SRR6212973 https://www.encodeproject.org/files/ENCFF451RCX/@@download/ENCFF451RCX.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF669OSV fastq reads ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF706KLP 2858456203 Michael Snyder, Stanford 8dc676b7ab8ffc282f9b63b7d2abcbc3 SRA:SRR6212972 https://www.encodeproject.org/files/ENCFF669OSV/@@download/ENCFF669OSV.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF323QDU bam unfiltered alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 100 ENCFF643CGH, ENCFF669OSV, ENCFF706KLP 5009516491 ENCODE Processing Pipeline c0694245fd743f8a0bc059b447e25827 https://www.encodeproject.org/files/ENCFF323QDU/@@download/ENCFF323QDU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF720AQH bam unfiltered alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 100 ENCFF669OSV, ENCFF706KLP, ENCFF807MUK 5003679037 ENCODE Processing Pipeline 5ffe2c72ef18789ec762d6a0b4632146 https://www.encodeproject.org/files/ENCFF720AQH/@@download/ENCFF720AQH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF170OSU bam unfiltered alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 100 ENCFF283GNM, ENCFF451RCX, ENCFF807MUK 5397977806 ENCODE Processing Pipeline 856884972977eb97ddc8c3a904303ccc https://www.encodeproject.org/files/ENCFF170OSU/@@download/ENCFF170OSU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF414QKE bam unfiltered alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 100 ENCFF283GNM, ENCFF451RCX, ENCFF643CGH 5405308080 ENCODE Processing Pipeline f141b80a30925433a0e291a2c7a60b4d https://www.encodeproject.org/files/ENCFF414QKE/@@download/ENCFF414QKE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF437IVZ bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 100 ENCFF643CGH, ENCFF669OSV, ENCFF706KLP 3897741970 ENCODE Processing Pipeline 849389fdec7085163b49536cbe36f588 https://www.encodeproject.org/files/ENCFF437IVZ/@@download/ENCFF437IVZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF119ZDI bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 100 ENCFF283GNM, ENCFF451RCX, ENCFF643CGH 4347711953 ENCODE Processing Pipeline 78fe49ad8bf307e258ca20e4dcacef2e https://www.encodeproject.org/files/ENCFF119ZDI/@@download/ENCFF119ZDI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF411OFR bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 100 ENCFF669OSV, ENCFF706KLP, ENCFF807MUK 3896067426 ENCODE Processing Pipeline 79bdc6e4953527be26e267547961263f https://www.encodeproject.org/files/ENCFF411OFR/@@download/ENCFF411OFR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF155TVA bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 100 ENCFF283GNM, ENCFF451RCX, ENCFF807MUK 4345660446 ENCODE Processing Pipeline c42caf7d595fab6a417ef0c14717fc5c https://www.encodeproject.org/files/ENCFF155TVA/@@download/ENCFF155TVA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF576ZHM bigWig signal p-value ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF411OFR, ENCFF834TUP 1099906573 ENCODE Processing Pipeline ea8dc0208fa82a7fb29d7b5a1b46ac90 https://www.encodeproject.org/files/ENCFF576ZHM/@@download/ENCFF576ZHM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF664WQO bigWig fold change over control ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF411OFR, ENCFF834TUP 1282199586 ENCODE Processing Pipeline 67e979c57b06ec97bee2986f64e7d047 https://www.encodeproject.org/files/ENCFF664WQO/@@download/ENCFF664WQO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF363AAC bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF155TVA, ENCFF160VXC, ENCFF411OFR, ENCFF834TUP 7321973 ENCODE Processing Pipeline 261290cb05031626787a10c961837e83 https://www.encodeproject.org/files/ENCFF363AAC/@@download/ENCFF363AAC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF953QTR bigBed narrowPeak optimal idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF273TYA 1349490 ENCODE Processing Pipeline 6462f652a62795f1118be1e84418c3f8 https://www.encodeproject.org/files/ENCFF953QTR/@@download/ENCFF953QTR.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF900FVZ bigWig signal p-value ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF155TVA, ENCFF160VXC 1342413870 ENCODE Processing Pipeline 15cdccd868f451d630fedec8aeb34735 https://www.encodeproject.org/files/ENCFF900FVZ/@@download/ENCFF900FVZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF056WPW bigWig signal p-value ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF155TVA, ENCFF160VXC, ENCFF411OFR, ENCFF834TUP 2190739555 ENCODE Processing Pipeline b1c97857448673528760d013c105a254 https://www.encodeproject.org/files/ENCFF056WPW/@@download/ENCFF056WPW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF280MOK bigWig fold change over control ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF155TVA, ENCFF160VXC, ENCFF411OFR, ENCFF834TUP 2261954220 ENCODE Processing Pipeline 4f5b67884ba1e5fa54ec21413fec2c96 https://www.encodeproject.org/files/ENCFF280MOK/@@download/ENCFF280MOK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF537WLH bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF411OFR, ENCFF834TUP 7140162 ENCODE Processing Pipeline 7beca13c72ab6a9518c4c80fa839c534 https://www.encodeproject.org/files/ENCFF537WLH/@@download/ENCFF537WLH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF129SII bigBed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF363AAC 12720883 ENCODE Processing Pipeline 6d43ffbf45835873cfa282144189d27c https://www.encodeproject.org/files/ENCFF129SII/@@download/ENCFF129SII.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF575STA bed narrowPeak conservative idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF322TVZ, ENCFF363AAC, ENCFF537WLH 565107 ENCODE Processing Pipeline 7658d629e977de0e2c608c86a1920c23 https://www.encodeproject.org/files/ENCFF575STA/@@download/ENCFF575STA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF632UTP bigBed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF537WLH 12830812 ENCODE Processing Pipeline 605b983f9921742fab939b1ecf99f1e9 https://www.encodeproject.org/files/ENCFF632UTP/@@download/ENCFF632UTP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF273TYA bed narrowPeak optimal idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF322TVZ, ENCFF363AAC, ENCFF537WLH 662184 ENCODE Processing Pipeline c8ba92b030fc5472424b29f32f637dc7 https://www.encodeproject.org/files/ENCFF273TYA/@@download/ENCFF273TYA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF619QIG bigWig fold change over control ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF155TVA, ENCFF160VXC 1347963603 ENCODE Processing Pipeline 2fdbb26594752cef5d17a884a0c6c527 https://www.encodeproject.org/files/ENCFF619QIG/@@download/ENCFF619QIG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF322TVZ bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF155TVA, ENCFF160VXC 7093766 ENCODE Processing Pipeline ab63538dc764ed73d698c6004ed4af4a https://www.encodeproject.org/files/ENCFF322TVZ/@@download/ENCFF322TVZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF307AUL bigBed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF322TVZ 12932271 ENCODE Processing Pipeline 620f13521738070a81869da527ce0312 https://www.encodeproject.org/files/ENCFF307AUL/@@download/ENCFF307AUL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF806RFJ bigBed narrowPeak conservative idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF575STA 1182707 ENCODE Processing Pipeline 0cefc8d74752610bf081f945e6a361ea https://www.encodeproject.org/files/ENCFF806RFJ/@@download/ENCFF806RFJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF828HBX bigWig fold change over control ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF119ZDI, ENCFF790TAN 1345018806 ENCODE Processing Pipeline 6f2d8b122344fa70279f9df59149ff99 https://www.encodeproject.org/files/ENCFF828HBX/@@download/ENCFF828HBX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF174JJX bigWig signal p-value ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF437IVZ, ENCFF712WXB 1319197747 ENCODE Processing Pipeline fb0c1badf4c456223b0ed7d3ce96a8ee https://www.encodeproject.org/files/ENCFF174JJX/@@download/ENCFF174JJX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF915IWX bigWig signal p-value ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF119ZDI, ENCFF437IVZ, ENCFF712WXB, ENCFF790TAN 2137470341 ENCODE Processing Pipeline 0eac11c58f7c7b07420e488fe83b8720 https://www.encodeproject.org/files/ENCFF915IWX/@@download/ENCFF915IWX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF907RBW bigWig fold change over control ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF437IVZ, ENCFF712WXB 1285224477 ENCODE Processing Pipeline 2aa07544aeec1e0c6ec0341af84de85e https://www.encodeproject.org/files/ENCFF907RBW/@@download/ENCFF907RBW.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF507SHK bigBed narrowPeak conservative idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF277ZUZ 1186862 ENCODE Processing Pipeline bb27d18bc827932e4e1c80adea4971aa https://www.encodeproject.org/files/ENCFF507SHK/@@download/ENCFF507SHK.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF277ZUZ bed narrowPeak conservative idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF560EPF, ENCFF643KVK, ENCFF667UFY 566076 ENCODE Processing Pipeline 1f41526ccf454592ac24daf2566523ca https://www.encodeproject.org/files/ENCFF277ZUZ/@@download/ENCFF277ZUZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF164WTL bigWig signal p-value ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF119ZDI, ENCFF790TAN 1204633629 ENCODE Processing Pipeline edceb49b4b942e74d520c195e64c1cde https://www.encodeproject.org/files/ENCFF164WTL/@@download/ENCFF164WTL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF643KVK bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF437IVZ, ENCFF712WXB 7144969 ENCODE Processing Pipeline 2714f0cdd850717c1e557c05841baca7 https://www.encodeproject.org/files/ENCFF643KVK/@@download/ENCFF643KVK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF667UFY bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF119ZDI, ENCFF437IVZ, ENCFF712WXB, ENCFF790TAN 7325831 ENCODE Processing Pipeline e662190e6c4fff0ba83c9f6821d340a6 https://www.encodeproject.org/files/ENCFF667UFY/@@download/ENCFF667UFY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF310BGR bigBed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF643KVK 12839666 ENCODE Processing Pipeline 420153fcc4b31d83e2f5cc4611182a87 https://www.encodeproject.org/files/ENCFF310BGR/@@download/ENCFF310BGR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF080LOV bigBed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF667UFY 12727401 ENCODE Processing Pipeline 15867e4e6107226d35f01bc3874b1ad7 https://www.encodeproject.org/files/ENCFF080LOV/@@download/ENCFF080LOV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF972UGK bed narrowPeak optimal idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF560EPF, ENCFF643KVK, ENCFF667UFY 677044 ENCODE Processing Pipeline 719a9d4a46c1991103ec3136bde2c0ef https://www.encodeproject.org/files/ENCFF972UGK/@@download/ENCFF972UGK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF645HNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF972UGK 1374021 ENCODE Processing Pipeline 054141fdb42692a5974573ded8c0a5cd https://www.encodeproject.org/files/ENCFF645HNZ/@@download/ENCFF645HNZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF987EAL bigWig fold change over control ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF119ZDI, ENCFF437IVZ, ENCFF712WXB, ENCFF790TAN 2293788539 ENCODE Processing Pipeline d33da4e64e3bd4831c4115fdc05cd20b https://www.encodeproject.org/files/ENCFF987EAL/@@download/ENCFF987EAL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF560EPF bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF119ZDI, ENCFF790TAN 7097761 ENCODE Processing Pipeline 954d1a3724e8b484b33be1b93c69c9b9 https://www.encodeproject.org/files/ENCFF560EPF/@@download/ENCFF560EPF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF407VYA bigBed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF560EPF 12952126 ENCODE Processing Pipeline c6a0594bfa6648e24c84ea576d93853e https://www.encodeproject.org/files/ENCFF407VYA/@@download/ENCFF407VYA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF351GCF fastq reads ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 1 36 single-ended 768728657 Bradley Bernstein, Broad 988432956deb6c4e71a13c51b8c73ddd https://www.encodeproject.org/files/ENCFF351GCF/@@download/ENCFF351GCF.fastq.gz Illumina HiSeq 2500 /files/ENCFF829PCB/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF324UEF fastq reads ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 1 36 single-ended 2888096068 Bradley Bernstein, Broad 99d3fe260f01db0d6b1dd7b9ec267357 https://www.encodeproject.org/files/ENCFF324UEF/@@download/ENCFF324UEF.fastq.gz Illumina HiSeq 2500 /files/ENCFF799XPQ/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF209PKW bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF324UEF, ENCFF807MUK 2419783793 ENCODE Processing Pipeline 20b9fa4238217d3d463ee5777f9b21c5 https://www.encodeproject.org/files/ENCFF209PKW/@@download/ENCFF209PKW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF476MIY bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF351GCF, ENCFF807MUK 743610639 ENCODE Processing Pipeline 1982bb0e0b0310d2d4162bda5b753734 https://www.encodeproject.org/files/ENCFF476MIY/@@download/ENCFF476MIY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF226QNI bam unfiltered alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF351GCF, ENCFF643CGH 1049453548 ENCODE Processing Pipeline 7de69f37b7b1174e624dd219e5ea9724 https://www.encodeproject.org/files/ENCFF226QNI/@@download/ENCFF226QNI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF387ZDQ bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF351GCF, ENCFF643CGH 743175228 ENCODE Processing Pipeline ba837b53de4a5d5b8b67cd3b9ec013ba https://www.encodeproject.org/files/ENCFF387ZDQ/@@download/ENCFF387ZDQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF490OKF bam unfiltered alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF324UEF, ENCFF643CGH 3625839887 ENCODE Processing Pipeline 9eaae85c445a59635298a09dcd240716 https://www.encodeproject.org/files/ENCFF490OKF/@@download/ENCFF490OKF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF572XLQ bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF324UEF, ENCFF643CGH 2418902010 ENCODE Processing Pipeline 9281c56310cdf7147265b3ff655a3b81 https://www.encodeproject.org/files/ENCFF572XLQ/@@download/ENCFF572XLQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF980MKG bigWig signal p-value ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF387ZDQ, ENCFF607ZQL, ENCFF630PML 1108844502 ENCODE Processing Pipeline f1101cee54c0f259796cb6c14e8f9edf https://www.encodeproject.org/files/ENCFF980MKG/@@download/ENCFF980MKG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF550YKK bigWig signal p-value ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF572XLQ, ENCFF607ZQL, ENCFF630PML 1309423503 ENCODE Processing Pipeline 2da52f6e638ae9d3ba8e65083ec13aea https://www.encodeproject.org/files/ENCFF550YKK/@@download/ENCFF550YKK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF016FKV bigWig signal p-value ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF387ZDQ, ENCFF572XLQ, ENCFF607ZQL, ENCFF630PML 1634618118 ENCODE Processing Pipeline a5da0ce85d46807ab17b4efb349cfe87 https://www.encodeproject.org/files/ENCFF016FKV/@@download/ENCFF016FKV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF697UCJ bigWig fold change over control ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF387ZDQ, ENCFF607ZQL, ENCFF630PML 694492525 ENCODE Processing Pipeline 13303c866ef9a040ad8bcf50ea12f457 https://www.encodeproject.org/files/ENCFF697UCJ/@@download/ENCFF697UCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF659CZX bigWig fold change over control ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF572XLQ, ENCFF607ZQL, ENCFF630PML 1505295445 ENCODE Processing Pipeline af1bdc27a320b4a355883e9977b5c8bb https://www.encodeproject.org/files/ENCFF659CZX/@@download/ENCFF659CZX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF269TED bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF387ZDQ, ENCFF607ZQL, ENCFF630PML 6095974 ENCODE Processing Pipeline 45c67933cb42d53a8e777aed25b237db https://www.encodeproject.org/files/ENCFF269TED/@@download/ENCFF269TED.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF633UOG bigWig fold change over control ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF387ZDQ, ENCFF572XLQ, ENCFF607ZQL, ENCFF630PML 1666398981 ENCODE Processing Pipeline 056994fc8169e9fe7db06c8935213541 https://www.encodeproject.org/files/ENCFF633UOG/@@download/ENCFF633UOG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF287VXQ bigBed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF269TED 14007555 ENCODE Processing Pipeline fbaf387204ad823e358aefafab2e6962 https://www.encodeproject.org/files/ENCFF287VXQ/@@download/ENCFF287VXQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF037JAR bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF572XLQ, ENCFF607ZQL, ENCFF630PML 6972197 ENCODE Processing Pipeline b2a9fe485dbe8cb34d5ae028afb14ded https://www.encodeproject.org/files/ENCFF037JAR/@@download/ENCFF037JAR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF622RLW bigBed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF037JAR 13730149 ENCODE Processing Pipeline d95efd49eeae233ac51b726e30e20147 https://www.encodeproject.org/files/ENCFF622RLW/@@download/ENCFF622RLW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF232FXZ bed narrowPeak optimal idr thresholded peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF037JAR, ENCFF269TED, ENCFF419RSJ, ENCFF780DNZ 1224211 ENCODE Processing Pipeline e48ba226dbad90c6a399efe094b2bbf3 https://www.encodeproject.org/files/ENCFF232FXZ/@@download/ENCFF232FXZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF780DNZ bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF387ZDQ, ENCFF572XLQ, ENCFF607ZQL, ENCFF630PML 6999832 ENCODE Processing Pipeline ae826d13ca5689e0beb9e12641699c6c https://www.encodeproject.org/files/ENCFF780DNZ/@@download/ENCFF780DNZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF562QUE bigBed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF780DNZ 13890511 ENCODE Processing Pipeline 4a8e71650f784383b8e3e9f04f0bda59 https://www.encodeproject.org/files/ENCFF562QUE/@@download/ENCFF562QUE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF196XXN bigBed narrowPeak optimal idr thresholded peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF232FXZ 2328946 ENCODE Processing Pipeline 952e21fa6d39e4165acf226fefcc04b8 https://www.encodeproject.org/files/ENCFF196XXN/@@download/ENCFF196XXN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF692BBL bam unfiltered alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF351GCF, ENCFF807MUK 1045442783 ENCODE Processing Pipeline a2883c7a219c3ec72bcb3dca23187ce1 https://www.encodeproject.org/files/ENCFF692BBL/@@download/ENCFF692BBL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF311WCV bam unfiltered alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF324UEF, ENCFF807MUK 3609486777 ENCODE Processing Pipeline 5100e6ade378501ae197c02eb57acd4e https://www.encodeproject.org/files/ENCFF311WCV/@@download/ENCFF311WCV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF896DAA bigWig signal p-value ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF112OEB, ENCFF186LRX, ENCFF476MIY 1024934062 ENCODE Processing Pipeline 78e90b2f9e7de1b2439c46addbd97050 https://www.encodeproject.org/files/ENCFF896DAA/@@download/ENCFF896DAA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF483TRD bigWig signal p-value ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW 1348586515 ENCODE Processing Pipeline 3bd1ef75607c994c9abdf3e098ae01ef https://www.encodeproject.org/files/ENCFF483TRD/@@download/ENCFF483TRD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF456RDD bigWig fold change over control ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW 1533964028 ENCODE Processing Pipeline ef5b42e094182f7da5b1907541cf9f16 https://www.encodeproject.org/files/ENCFF456RDD/@@download/ENCFF456RDD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF343WKF bigWig fold change over control ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW, ENCFF476MIY 1689267056 ENCODE Processing Pipeline bec9167c098f0ccc0cf57bd6c42ef02d https://www.encodeproject.org/files/ENCFF343WKF/@@download/ENCFF343WKF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF646CMN bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF112OEB, ENCFF186LRX, ENCFF476MIY 6095639 ENCODE Processing Pipeline 7ab32b2460247a09c348e205d542ed9a https://www.encodeproject.org/files/ENCFF646CMN/@@download/ENCFF646CMN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF752ZNY bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW 6971417 ENCODE Processing Pipeline fbb61f292703876126770e0316bb2fb4 https://www.encodeproject.org/files/ENCFF752ZNY/@@download/ENCFF752ZNY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF888CCA bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW, ENCFF476MIY 6996574 ENCODE Processing Pipeline 704b1a988688254156bed767e1cff0f1 https://www.encodeproject.org/files/ENCFF888CCA/@@download/ENCFF888CCA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF785IOE bigWig signal p-value ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW, ENCFF476MIY 1331976818 ENCODE Processing Pipeline 29f6649f2b0444f4c609093720896fa0 https://www.encodeproject.org/files/ENCFF785IOE/@@download/ENCFF785IOE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF942FYR bigWig fold change over control ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF112OEB, ENCFF186LRX, ENCFF476MIY 707316649 ENCODE Processing Pipeline 58b0709ea761c2d8b7e6cd31239a8c65 https://www.encodeproject.org/files/ENCFF942FYR/@@download/ENCFF942FYR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF964NSC bigBed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF646CMN 14001457 ENCODE Processing Pipeline a5357f4d42d57eab2fd5ea3f77e3f5cb https://www.encodeproject.org/files/ENCFF964NSC/@@download/ENCFF964NSC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF268UGS bigBed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF752ZNY 13725010 ENCODE Processing Pipeline 06bdc0d2d0cd3276f41ffc542e77b81f https://www.encodeproject.org/files/ENCFF268UGS/@@download/ENCFF268UGS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF065JNX bigBed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF888CCA 13881113 ENCODE Processing Pipeline ddad35360df1ea81d585105b820a8ee1 https://www.encodeproject.org/files/ENCFF065JNX/@@download/ENCFF065JNX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF258RWN bed narrowPeak optimal idr thresholded peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF646CMN, ENCFF752ZNY, ENCFF888CCA 1222113 ENCODE Processing Pipeline 56a529d11450f4ff7814d1699245ec5f https://www.encodeproject.org/files/ENCFF258RWN/@@download/ENCFF258RWN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF210PVZ bigBed narrowPeak optimal idr thresholded peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF258RWN 2324807 ENCODE Processing Pipeline 4587263e67fea8ee1fbc03aee88556da https://www.encodeproject.org/files/ENCFF210PVZ/@@download/ENCFF210PVZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF055CQR fastq reads ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF784TRG 2978057817 Michael Snyder, Stanford 574d762aeaff9e2a9a1ec4668292afcb https://www.encodeproject.org/files/ENCFF055CQR/@@download/ENCFF055CQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released experiment not submitted to GEO partially characterized antibody ENCFF784TRG fastq reads ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF055CQR 2944093851 Michael Snyder, Stanford 62f884d82f5ab03791d2b0bd24802864 https://www.encodeproject.org/files/ENCFF784TRG/@@download/ENCFF784TRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released experiment not submitted to GEO partially characterized antibody ENCFF909TZW fastq reads ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 1 100 paired-ended 1 ENCFF999MLQ 2971509757 Michael Snyder, Stanford 9f990a70175dcc71a73d97f5b1890e6f https://www.encodeproject.org/files/ENCFF909TZW/@@download/ENCFF909TZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released experiment not submitted to GEO partially characterized antibody ENCFF999MLQ fastq reads ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 1 100 paired-ended 2 ENCFF909TZW 3012860933 Michael Snyder, Stanford f862d7e1af13ac9c2783ccc8b0675dd2 https://www.encodeproject.org/files/ENCFF999MLQ/@@download/ENCFF999MLQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released experiment not submitted to GEO partially characterized antibody ENCFF910XGG bam unfiltered alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 100 ENCFF643CGH, ENCFF909TZW, ENCFF999MLQ 6508977235 ENCODE Processing Pipeline 044a244995fa14384dff8e8a2cbfbcf4 https://www.encodeproject.org/files/ENCFF910XGG/@@download/ENCFF910XGG.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF998XCQ bam unfiltered alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 100 ENCFF055CQR, ENCFF643CGH, ENCFF784TRG 6429915873 ENCODE Processing Pipeline 80d6e9ad0f84ed2435031985614153f6 https://www.encodeproject.org/files/ENCFF998XCQ/@@download/ENCFF998XCQ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF156NBU bam unfiltered alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 100 ENCFF055CQR, ENCFF784TRG, ENCFF807MUK 6425008931 ENCODE Processing Pipeline eff6309fa69ac17fa8ba37cdf75927ef https://www.encodeproject.org/files/ENCFF156NBU/@@download/ENCFF156NBU.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF982YOB bam unfiltered alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 100 ENCFF807MUK, ENCFF909TZW, ENCFF999MLQ 6503553522 ENCODE Processing Pipeline 33e757bc12c79d57cbf7042389487525 https://www.encodeproject.org/files/ENCFF982YOB/@@download/ENCFF982YOB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF842XJL bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 100 ENCFF055CQR, ENCFF784TRG, ENCFF807MUK 5130249113 ENCODE Processing Pipeline b316bf0075d4364a34280c6a5d2b108a https://www.encodeproject.org/files/ENCFF842XJL/@@download/ENCFF842XJL.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF071ONN bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 100 ENCFF643CGH, ENCFF909TZW, ENCFF999MLQ 5263294015 ENCODE Processing Pipeline 02fa0ec802f1d94f28bee6cf6f905206 https://www.encodeproject.org/files/ENCFF071ONN/@@download/ENCFF071ONN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF502QVA bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 100 ENCFF807MUK, ENCFF909TZW, ENCFF999MLQ 5258568488 ENCODE Processing Pipeline 854ccb16c87ef1a9c87e8ecb23031739 https://www.encodeproject.org/files/ENCFF502QVA/@@download/ENCFF502QVA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF507AHN bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 100 ENCFF055CQR, ENCFF643CGH, ENCFF784TRG 5134646205 ENCODE Processing Pipeline e463badb4e374c797e5c53fc5d71a667 https://www.encodeproject.org/files/ENCFF507AHN/@@download/ENCFF507AHN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF998FIM bigWig signal p-value ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF507AHN, ENCFF720AUK, ENCFF796JTX 1431950604 ENCODE Processing Pipeline ffcdc746a108f8f468cd14d25f353fc5 https://www.encodeproject.org/files/ENCFF998FIM/@@download/ENCFF998FIM.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF270QWU bigWig signal p-value ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF071ONN, ENCFF507AHN, ENCFF720AUK, ENCFF796JTX 1944548153 ENCODE Processing Pipeline 37c2291930882ace910d949a4bc0b017 https://www.encodeproject.org/files/ENCFF270QWU/@@download/ENCFF270QWU.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF273QPL bigBed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF866LFO 13326841 ENCODE Processing Pipeline 8ea4d9effb3e134850e9e5753fb37183 https://www.encodeproject.org/files/ENCFF273QPL/@@download/ENCFF273QPL.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF636QED bigWig fold change over control ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF507AHN, ENCFF720AUK, ENCFF796JTX 1407397755 ENCODE Processing Pipeline 04f4f8c4b52db7569d87b4faa39ff91d https://www.encodeproject.org/files/ENCFF636QED/@@download/ENCFF636QED.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF714ZYC bigWig signal p-value ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF071ONN, ENCFF720AUK, ENCFF796JTX 1436923368 ENCODE Processing Pipeline a2bfc3186b852b3283eeac10e51dac15 https://www.encodeproject.org/files/ENCFF714ZYC/@@download/ENCFF714ZYC.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF338NRW bigWig fold change over control ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF071ONN, ENCFF720AUK, ENCFF796JTX 1424442674 ENCODE Processing Pipeline 5cf24b197f262c942200a0740beec3c0 https://www.encodeproject.org/files/ENCFF338NRW/@@download/ENCFF338NRW.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF644QPE bigWig fold change over control ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF071ONN, ENCFF507AHN, ENCFF720AUK, ENCFF796JTX 1981891084 ENCODE Processing Pipeline bbb2f7a71ed0cd81da2a229d338318cc https://www.encodeproject.org/files/ENCFF644QPE/@@download/ENCFF644QPE.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF866LFO bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF507AHN, ENCFF720AUK, ENCFF796JTX 6906756 ENCODE Processing Pipeline b97382fa12b5978d32865b01dbd23db1 https://www.encodeproject.org/files/ENCFF866LFO/@@download/ENCFF866LFO.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF817UXN bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF071ONN, ENCFF720AUK, ENCFF796JTX 6907249 ENCODE Processing Pipeline 73e6be6c02a544ad3d4e9ab53de358ed https://www.encodeproject.org/files/ENCFF817UXN/@@download/ENCFF817UXN.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF529NHH bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF071ONN, ENCFF507AHN, ENCFF720AUK, ENCFF796JTX 7253100 ENCODE Processing Pipeline b6027db908da327baa0af896cd88b093 https://www.encodeproject.org/files/ENCFF529NHH/@@download/ENCFF529NHH.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF528EQW bigBed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF817UXN 13346658 ENCODE Processing Pipeline 88b4cb786e4f593830ba9d0cb8a45609 https://www.encodeproject.org/files/ENCFF528EQW/@@download/ENCFF528EQW.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF315WYL bigBed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF529NHH 13141428 ENCODE Processing Pipeline 1264c1d805fe4f63809c5609d76ed310 https://www.encodeproject.org/files/ENCFF315WYL/@@download/ENCFF315WYL.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF762ACV bed narrowPeak conservative idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF529NHH, ENCFF817UXN, ENCFF866LFO 296542 ENCODE Processing Pipeline 922b42b3429ddfe20ed682f3f59d5ddf https://www.encodeproject.org/files/ENCFF762ACV/@@download/ENCFF762ACV.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF872DSY bigBed narrowPeak conservative idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF762ACV 621562 ENCODE Processing Pipeline e3ea7787563ab717c8153faa0ebf7ded https://www.encodeproject.org/files/ENCFF872DSY/@@download/ENCFF872DSY.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF713ALB bed narrowPeak optimal idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF529NHH, ENCFF817UXN, ENCFF866LFO 325965 ENCODE Processing Pipeline e7bf6f24985c7a298095f6b94c2adf87 https://www.encodeproject.org/files/ENCFF713ALB/@@download/ENCFF713ALB.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF906JAN bigBed narrowPeak optimal idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF713ALB 671380 ENCODE Processing Pipeline 9580dddafa10a20a15589c7d4e202580 https://www.encodeproject.org/files/ENCFF906JAN/@@download/ENCFF906JAN.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF238BHL bigWig signal p-value ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF842XJL 1477299310 ENCODE Processing Pipeline 7f9b2c52ea4030b8a464bd926f96a2b9 https://www.encodeproject.org/files/ENCFF238BHL/@@download/ENCFF238BHL.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF906QPQ bigWig fold change over control ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF842XJL 1400569241 ENCODE Processing Pipeline 35526ed7c377c2da16935776819132b5 https://www.encodeproject.org/files/ENCFF906QPQ/@@download/ENCFF906QPQ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF284RAJ bigWig signal p-value ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV 1444257543 ENCODE Processing Pipeline 34337f5c8e5035370ab666478d0838ee https://www.encodeproject.org/files/ENCFF284RAJ/@@download/ENCFF284RAJ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF655FEV bigWig signal p-value ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV, ENCFF842XJL 1942270081 ENCODE Processing Pipeline 51d3d0d2adde03a4cc702e8cdddb6d3d https://www.encodeproject.org/files/ENCFF655FEV/@@download/ENCFF655FEV.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF303HTS bigWig fold change over control ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV 1433846493 ENCODE Processing Pipeline 99d0bdd15c5e1429d5f8d67136a81b73 https://www.encodeproject.org/files/ENCFF303HTS/@@download/ENCFF303HTS.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF441OOU bigWig fold change over control ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV, ENCFF842XJL 1979684418 ENCODE Processing Pipeline dcbb43c5e1c68bcbcd526a9b7c4eb0b1 https://www.encodeproject.org/files/ENCFF441OOU/@@download/ENCFF441OOU.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF601KTD bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF842XJL 6898463 ENCODE Processing Pipeline 3c127fea89d3f7d81af3ae4f316cd256 https://www.encodeproject.org/files/ENCFF601KTD/@@download/ENCFF601KTD.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF007QMQ bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV 6900980 ENCODE Processing Pipeline d8e1cf8388b04170b3f1a6067d13be0c https://www.encodeproject.org/files/ENCFF007QMQ/@@download/ENCFF007QMQ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF846SYJ bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV, ENCFF842XJL 7235294 ENCODE Processing Pipeline 25007ee15b2fd753203339b932672eea https://www.encodeproject.org/files/ENCFF846SYJ/@@download/ENCFF846SYJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF094VSN bigBed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF601KTD 13308997 ENCODE Processing Pipeline 7b11c0cfa215093006df9daf661589d1 https://www.encodeproject.org/files/ENCFF094VSN/@@download/ENCFF094VSN.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF247KHB bigBed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF007QMQ 13328839 ENCODE Processing Pipeline 735fc03e4c47c4277d105e331cb70acf https://www.encodeproject.org/files/ENCFF247KHB/@@download/ENCFF247KHB.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF987ZNM bigBed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF846SYJ 13117630 ENCODE Processing Pipeline 58ebc08c7d17d32087be1a47a497aed3 https://www.encodeproject.org/files/ENCFF987ZNM/@@download/ENCFF987ZNM.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF988FFD bed narrowPeak conservative idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF001TDO, ENCFF007QMQ, ENCFF601KTD, ENCFF846SYJ 293526 ENCODE Processing Pipeline 937b4ee83ed349aa9b239476938f297e https://www.encodeproject.org/files/ENCFF988FFD/@@download/ENCFF988FFD.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF190ADI bigBed narrowPeak conservative idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF988FFD 612608 ENCODE Processing Pipeline 9b2b397242ccb89e03cbdc9e76c3647b https://www.encodeproject.org/files/ENCFF190ADI/@@download/ENCFF190ADI.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF530FZL bed narrowPeak optimal idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF001TDO, ENCFF007QMQ, ENCFF601KTD, ENCFF846SYJ 329728 ENCODE Processing Pipeline 777dde87a6c7533afb8183cab4ad171f https://www.encodeproject.org/files/ENCFF530FZL/@@download/ENCFF530FZL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF649EGG bigBed narrowPeak optimal idr thresholded peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1, 2 ENCFF530FZL 673358 ENCODE Processing Pipeline 2c9fe4f04b3593f115cd8450611bab24 https://www.encodeproject.org/files/ENCFF649EGG/@@download/ENCFF649EGG.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF653QNP fastq reads ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 2 ENCFF955QVT 3736608482 Michael Snyder, Stanford 32c84b53dc1004829831a7ebe225feef SRA:SRR6213932 https://www.encodeproject.org/files/ENCFF653QNP/@@download/ENCFF653QNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released ENCFF955QVT fastq reads ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 1 ENCFF653QNP 3712688679 Michael Snyder, Stanford 29f390acb5a11d1783eb07791231b37c SRA:SRR6213932 https://www.encodeproject.org/files/ENCFF955QVT/@@download/ENCFF955QVT.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released ENCFF895TXD fastq reads ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 2 ENCFF601UZA 3967420042 Michael Snyder, Stanford 8729035c90100fdc50f8b8a4e2181820 SRA:SRR6213931 https://www.encodeproject.org/files/ENCFF895TXD/@@download/ENCFF895TXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released ENCFF601UZA fastq reads ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 1 ENCFF895TXD 3953949127 Michael Snyder, Stanford b08912313ec62be862ebf286f4ad9270 SRA:SRR6213931 https://www.encodeproject.org/files/ENCFF601UZA/@@download/ENCFF601UZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released ENCFF767JCY bam unfiltered alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF601UZA, ENCFF807MUK, ENCFF895TXD 7749841993 ENCODE Processing Pipeline ef35f9019271370dfabb7f70a69d3eda https://www.encodeproject.org/files/ENCFF767JCY/@@download/ENCFF767JCY.bam hg19 released ENCFF720UHQ bam unfiltered alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF643CGH, ENCFF653QNP, ENCFF955QVT 7373096505 ENCODE Processing Pipeline feef93a9cbea611f62471305db519d19 https://www.encodeproject.org/files/ENCFF720UHQ/@@download/ENCFF720UHQ.bam GRCh38 released ENCFF845HUA bam unfiltered alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF601UZA, ENCFF643CGH, ENCFF895TXD 7757884072 ENCODE Processing Pipeline d47400193b1026b28383d81840627ef2 https://www.encodeproject.org/files/ENCFF845HUA/@@download/ENCFF845HUA.bam GRCh38 released ENCFF180CLD bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF601UZA, ENCFF807MUK, ENCFF895TXD 6369946823 ENCODE Processing Pipeline 4d6b70acebefd8d41b8cb57970d10c39 https://www.encodeproject.org/files/ENCFF180CLD/@@download/ENCFF180CLD.bam hg19 released ENCFF144OSY bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF643CGH, ENCFF653QNP, ENCFF955QVT 6078285290 ENCODE Processing Pipeline 2944a5d04c170fa1d27245315e42c47f https://www.encodeproject.org/files/ENCFF144OSY/@@download/ENCFF144OSY.bam GRCh38 released ENCFF065ZXS bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF601UZA, ENCFF643CGH, ENCFF895TXD 6375293942 ENCODE Processing Pipeline 9cb8c57c3aed971f6ab62478fdf14df3 https://www.encodeproject.org/files/ENCFF065ZXS/@@download/ENCFF065ZXS.bam GRCh38 released ENCFF845SDG bam unfiltered alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF653QNP, ENCFF807MUK, ENCFF955QVT 7363536154 ENCODE Processing Pipeline 9f52268d27be08e16c043f32b2d0a84b https://www.encodeproject.org/files/ENCFF845SDG/@@download/ENCFF845SDG.bam hg19 released ENCFF320TZV bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF653QNP, ENCFF807MUK, ENCFF955QVT 6071159678 ENCODE Processing Pipeline 468fcb78d20150814fe2cdedcac96910 https://www.encodeproject.org/files/ENCFF320TZV/@@download/ENCFF320TZV.bam hg19 released ENCFF175MHR bigWig signal p-value ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF144OSY, ENCFF290DLX 1407061797 ENCODE Processing Pipeline f428da0872e72e0d8d69fd2e940ea945 https://www.encodeproject.org/files/ENCFF175MHR/@@download/ENCFF175MHR.bigWig GRCh38 released ENCFF882ORF bigWig signal p-value ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF065ZXS, ENCFF290DLX, ENCFF488RJA 1473595141 ENCODE Processing Pipeline 27a5e02cc9b2ffbadb935cd326fbea32 https://www.encodeproject.org/files/ENCFF882ORF/@@download/ENCFF882ORF.bigWig GRCh38 released ENCFF072LQM bigWig signal p-value ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF040GAR, ENCFF180CLD, ENCFF760DHW 1706727831 ENCODE Processing Pipeline b729eb01ea20dc741e840bc8e0bad014 https://www.encodeproject.org/files/ENCFF072LQM/@@download/ENCFF072LQM.bigWig hg19 released ENCFF260ZDT bigWig signal p-value ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF320TZV, ENCFF760DHW 1237169170 ENCODE Processing Pipeline 534008e95cb20cf96fe669c7adc28161 https://www.encodeproject.org/files/ENCFF260ZDT/@@download/ENCFF260ZDT.bigWig hg19 released ENCFF478WJL bigWig signal p-value ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF065ZXS, ENCFF144OSY, ENCFF290DLX, ENCFF488RJA 2297823329 ENCODE Processing Pipeline 390f9708c951bb62470522c8fffe67bb https://www.encodeproject.org/files/ENCFF478WJL/@@download/ENCFF478WJL.bigWig GRCh38 released ENCFF631VGG bigWig fold change over control ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF040GAR, ENCFF180CLD, ENCFF760DHW 1804975123 ENCODE Processing Pipeline dfd91efbb9a60e90b6ecf1fec057c49e https://www.encodeproject.org/files/ENCFF631VGG/@@download/ENCFF631VGG.bigWig hg19 released ENCFF673LQA bigWig signal p-value ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF040GAR, ENCFF180CLD, ENCFF320TZV, ENCFF760DHW 2305774133 ENCODE Processing Pipeline 268960953997d9e2f7441ef03624636d https://www.encodeproject.org/files/ENCFF673LQA/@@download/ENCFF673LQA.bigWig hg19 released ENCFF921WEP bigWig fold change over control ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF065ZXS, ENCFF290DLX, ENCFF488RJA 1793694407 ENCODE Processing Pipeline ee339633764b07ae3138e8410661ce26 https://www.encodeproject.org/files/ENCFF921WEP/@@download/ENCFF921WEP.bigWig GRCh38 released ENCFF104OXO bigWig fold change over control ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF320TZV, ENCFF760DHW 1375110043 ENCODE Processing Pipeline be807e764d376da7c0da30d5cda3277b https://www.encodeproject.org/files/ENCFF104OXO/@@download/ENCFF104OXO.bigWig hg19 released ENCFF301MUO bigWig fold change over control ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF144OSY, ENCFF290DLX 1388691829 ENCODE Processing Pipeline 09a60199f09b42a3e1f177faea47f5ef https://www.encodeproject.org/files/ENCFF301MUO/@@download/ENCFF301MUO.bigWig GRCh38 released ENCFF816TZI bigBed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF225PQO 11519520 ENCODE Processing Pipeline b5e06f5e973aa44d22eb0e8fc1b14c79 https://www.encodeproject.org/files/ENCFF816TZI/@@download/ENCFF816TZI.bigBed GRCh38 released ENCFF730EIH bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF040GAR, ENCFF180CLD, ENCFF320TZV, ENCFF760DHW 7231208 ENCODE Processing Pipeline 42f73b958510c83321f5e8380f3d4c94 https://www.encodeproject.org/files/ENCFF730EIH/@@download/ENCFF730EIH.bed.gz hg19 released ENCFF240PYU bed narrowPeak optimal idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF333AFS, ENCFF713XLB, ENCFF730EIH 22954 ENCODE Processing Pipeline 94f3b9561dab2bf41b16692b087cccd7 https://www.encodeproject.org/files/ENCFF240PYU/@@download/ENCFF240PYU.bed.gz hg19 released ENCFF306LPM bigWig fold change over control ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF040GAR, ENCFF180CLD, ENCFF320TZV, ENCFF760DHW 2351714766 ENCODE Processing Pipeline 13644dd9d74a7a38889cd066e8e8cb41 https://www.encodeproject.org/files/ENCFF306LPM/@@download/ENCFF306LPM.bigWig hg19 released ENCFF333AFS bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF040GAR, ENCFF180CLD, ENCFF760DHW 6612799 ENCODE Processing Pipeline 08a070c5b1ce4adbd72f9d307a919328 https://www.encodeproject.org/files/ENCFF333AFS/@@download/ENCFF333AFS.bed.gz hg19 released ENCFF755AGO bigBed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF946BKQ 11412060 ENCODE Processing Pipeline e160ee25d916c794c32643307f0d1bf5 https://www.encodeproject.org/files/ENCFF755AGO/@@download/ENCFF755AGO.bigBed GRCh38 released ENCFF355WFN bigBed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF333AFS 11241257 ENCODE Processing Pipeline fc68ea4c8cc256a8e410830e53788018 https://www.encodeproject.org/files/ENCFF355WFN/@@download/ENCFF355WFN.bigBed hg19 released ENCFF975DHL bed narrowPeak conservative idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF333AFS, ENCFF713XLB, ENCFF730EIH 17461 ENCODE Processing Pipeline a4ac5eeae50b908223daf6aaa7fd0f73 https://www.encodeproject.org/files/ENCFF975DHL/@@download/ENCFF975DHL.bed.gz hg19 released ENCFF486BCS bigBed narrowPeak optimal idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF240PYU 93212 ENCODE Processing Pipeline 190211bd9ce2f7fb2fcf903186fba546 https://www.encodeproject.org/files/ENCFF486BCS/@@download/ENCFF486BCS.bigBed hg19 released ENCFF088YYD bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF065ZXS, ENCFF290DLX, ENCFF488RJA 6576242 ENCODE Processing Pipeline 7ff4f00eecc1252aaa51aa5d4fcd40ed https://www.encodeproject.org/files/ENCFF088YYD/@@download/ENCFF088YYD.bed.gz GRCh38 released ENCFF422NHK bigBed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF088YYD 11269478 ENCODE Processing Pipeline e91b1b5acfa54fd2ff571fcdbf63b730 https://www.encodeproject.org/files/ENCFF422NHK/@@download/ENCFF422NHK.bigBed GRCh38 released ENCFF400KNW bigBed narrowPeak optimal idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF532KPP 96613 ENCODE Processing Pipeline e49a65c9541da0fa81182319566b9da3 https://www.encodeproject.org/files/ENCFF400KNW/@@download/ENCFF400KNW.bigBed GRCh38 released ENCFF229HKY bigWig fold change over control ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF065ZXS, ENCFF144OSY, ENCFF290DLX, ENCFF488RJA 2341671685 ENCODE Processing Pipeline 4938096aa089d9b909aafc5d67919e7e https://www.encodeproject.org/files/ENCFF229HKY/@@download/ENCFF229HKY.bigWig GRCh38 released ENCFF225PQO bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF144OSY, ENCFF290DLX 6270405 ENCODE Processing Pipeline c3ac90d5c45422327097ef1bb590cf4d https://www.encodeproject.org/files/ENCFF225PQO/@@download/ENCFF225PQO.bed.gz GRCh38 released ENCFF946BKQ bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF065ZXS, ENCFF144OSY, ENCFF290DLX, ENCFF488RJA 7238780 ENCODE Processing Pipeline db9e2754d76aa716ec504f3e89889165 https://www.encodeproject.org/files/ENCFF946BKQ/@@download/ENCFF946BKQ.bed.gz GRCh38 released ENCFF163TXL bigBed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF713XLB 11499419 ENCODE Processing Pipeline f0e9c12927f908ec31f8cd5a7fabdd29 https://www.encodeproject.org/files/ENCFF163TXL/@@download/ENCFF163TXL.bigBed hg19 released ENCFF829KIX bigBed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF730EIH 11390288 ENCODE Processing Pipeline 78c0cb151588cc84441ec8645d8072cf https://www.encodeproject.org/files/ENCFF829KIX/@@download/ENCFF829KIX.bigBed hg19 released ENCFF389SAB bigBed narrowPeak conservative idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF975DHL 83858 ENCODE Processing Pipeline 01f30b8f007a6efb77a393b990deb98c https://www.encodeproject.org/files/ENCFF389SAB/@@download/ENCFF389SAB.bigBed hg19 released ENCFF564TKQ bed narrowPeak conservative idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF088YYD, ENCFF225PQO, ENCFF419RSJ, ENCFF946BKQ 18201 ENCODE Processing Pipeline 6c0bd783a3d5e9f11ee417bd990a8ac4 https://www.encodeproject.org/files/ENCFF564TKQ/@@download/ENCFF564TKQ.bed.gz GRCh38 released ENCFF532KPP bed narrowPeak optimal idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF088YYD, ENCFF225PQO, ENCFF419RSJ, ENCFF946BKQ 23960 ENCODE Processing Pipeline 39458ea36461b1b16c304b951f6e23fc https://www.encodeproject.org/files/ENCFF532KPP/@@download/ENCFF532KPP.bed.gz GRCh38 released ENCFF713XLB bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF320TZV, ENCFF760DHW 6268005 ENCODE Processing Pipeline 581a0088f862964302b319aef8683c80 https://www.encodeproject.org/files/ENCFF713XLB/@@download/ENCFF713XLB.bed.gz hg19 released ENCFF943FUK bigBed narrowPeak conservative idr thresholded peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF564TKQ 86925 ENCODE Processing Pipeline d3edd6b1096582daa78df44fd8a91c26 https://www.encodeproject.org/files/ENCFF943FUK/@@download/ENCFF943FUK.bigBed GRCh38 released ENCFF827DFH bam unfiltered alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002BBY, ENCFF807MUK 1913756960 ENCODE Processing Pipeline 45ca1ec1a56a7265b645c26766c4786c https://www.encodeproject.org/files/ENCFF827DFH/@@download/ENCFF827DFH.bam hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF103LAY bam unfiltered alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002ATD, ENCFF807MUK 933492561 ENCODE Processing Pipeline 90e246236ba18d278ed43ba431f15c5b https://www.encodeproject.org/files/ENCFF103LAY/@@download/ENCFF103LAY.bam hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF002ATD fastq reads ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 1 36 single-ended 677386473 Bradley Bernstein, Broad cc8870e982ea022525b941b598ea0e36 https://www.encodeproject.org/files/ENCFF002ATD/@@download/ENCFF002ATD.fastq.gz Illumina HiSeq 2500 /files/ENCFF228EQX/, /files/ENCFF475WXS/, /files/ENCFF489HIX/, /files/ENCFF890HQY/ released low read length, low read depth, inconsistent control read length, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF002BBY fastq reads ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 1 36 single-ended 1446956984 Bradley Bernstein, Broad e3f832ad2d5a414309a9ad075a0d8987 https://www.encodeproject.org/files/ENCFF002BBY/@@download/ENCFF002BBY.fastq.gz Illumina HiSeq 2500 /files/ENCFF093MCZ/ released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF957IJL bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF002BBY, ENCFF807MUK 1304737031 ENCODE Processing Pipeline 76e8c2c0c03b5edfd9c85ee58ca02ce8 https://www.encodeproject.org/files/ENCFF957IJL/@@download/ENCFF957IJL.bam hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF496TSK bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF002ATD, ENCFF807MUK 642531533 ENCODE Processing Pipeline ee145fd1eff2444ceb737f4c9121095b https://www.encodeproject.org/files/ENCFF496TSK/@@download/ENCFF496TSK.bam hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF770VVI bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002ATD, ENCFF643CGH 642170265 ENCODE Processing Pipeline 61539f5e02a2bdc472a33166a60cd46b https://www.encodeproject.org/files/ENCFF770VVI/@@download/ENCFF770VVI.bam GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF224TJD bam unfiltered alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002ATD, ENCFF643CGH 937902474 ENCODE Processing Pipeline b626d2e013083bbe060e88f2313e217a https://www.encodeproject.org/files/ENCFF224TJD/@@download/ENCFF224TJD.bam GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF422YWL bam unfiltered alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002BBY, ENCFF643CGH 1921197470 ENCODE Processing Pipeline 9a084fada004e2bdfa4f8db15aa76b6e https://www.encodeproject.org/files/ENCFF422YWL/@@download/ENCFF422YWL.bam GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF414QJE bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002BBY, ENCFF643CGH 1304059310 ENCODE Processing Pipeline 82893974990e37675428a58938f03426 https://www.encodeproject.org/files/ENCFF414QJE/@@download/ENCFF414QJE.bam GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF455VZE bigWig signal p-value ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY 984574426 ENCODE Processing Pipeline 24273eb7746a6efc24f694585dd3b793 https://www.encodeproject.org/files/ENCFF455VZE/@@download/ENCFF455VZE.bigWig hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF020CMT bigWig signal p-value ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY, ENCFF957IJL 1381858142 ENCODE Processing Pipeline 0fd59e8997354ec2f9c190893c2e7fe1 https://www.encodeproject.org/files/ENCFF020CMT/@@download/ENCFF020CMT.bigWig hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF713BJR bigWig fold change over control ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY 676943408 ENCODE Processing Pipeline 7bfe559990a3f70da4f03605a732078a https://www.encodeproject.org/files/ENCFF713BJR/@@download/ENCFF713BJR.bigWig hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF912FKN bigWig fold change over control ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY, ENCFF957IJL 1296228140 ENCODE Processing Pipeline fbb06b0677f9ea9eda92461f66ab5c83 https://www.encodeproject.org/files/ENCFF912FKN/@@download/ENCFF912FKN.bigWig hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF039AMT bigWig fold change over control ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF144FLB, ENCFF574DLY, ENCFF957IJL 1044693820 ENCODE Processing Pipeline d3870f25b851d6a0af76f9fc78512eeb https://www.encodeproject.org/files/ENCFF039AMT/@@download/ENCFF039AMT.bigWig hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF847GRL bigBed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF935FTJ 13864946 ENCODE Processing Pipeline 7205fc53ea3ab9628514d0a1fc9909e9 https://www.encodeproject.org/files/ENCFF847GRL/@@download/ENCFF847GRL.bigBed hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF730NJT bigBed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF763SUY 11468184 ENCODE Processing Pipeline db13bd07618831b256705e55c3df0113 https://www.encodeproject.org/files/ENCFF730NJT/@@download/ENCFF730NJT.bigBed hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF935FTJ bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF144FLB, ENCFF574DLY, ENCFF957IJL 6335023 ENCODE Processing Pipeline 71543bcc95c3ceee1fbd1f6500c40145 https://www.encodeproject.org/files/ENCFF935FTJ/@@download/ENCFF935FTJ.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF662BPG bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY, ENCFF957IJL 6585076 ENCODE Processing Pipeline 9a49cb82fd1744dadbe0aeb6976b1361 https://www.encodeproject.org/files/ENCFF662BPG/@@download/ENCFF662BPG.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF481YNO bigBed narrowPeak conservative idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF559NMA 1499799 ENCODE Processing Pipeline e3f1c7300289218db07ff85920c86bd4 https://www.encodeproject.org/files/ENCFF481YNO/@@download/ENCFF481YNO.bigBed hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF099PMW bigWig signal p-value ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF144FLB, ENCFF574DLY, ENCFF957IJL 1094470735 ENCODE Processing Pipeline b50bd44b7f9c7a8d92b1071e474eb555 https://www.encodeproject.org/files/ENCFF099PMW/@@download/ENCFF099PMW.bigWig hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF763SUY bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY 5632476 ENCODE Processing Pipeline 2db2fbf17e79b23bab75975472a7cbe7 https://www.encodeproject.org/files/ENCFF763SUY/@@download/ENCFF763SUY.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF004YXI bigBed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF662BPG 13992172 ENCODE Processing Pipeline 12064969e863be0aa89a7da08bfb20ae https://www.encodeproject.org/files/ENCFF004YXI/@@download/ENCFF004YXI.bigBed hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF559NMA bed narrowPeak conservative idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF001TDO, ENCFF662BPG, ENCFF763SUY, ENCFF935FTJ 921820 ENCODE Processing Pipeline 7f7ae2a7f69be30fdd031dd883423ed1 https://www.encodeproject.org/files/ENCFF559NMA/@@download/ENCFF559NMA.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF653ZMJ bed narrowPeak optimal idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF001TDO, ENCFF662BPG, ENCFF763SUY, ENCFF935FTJ 935049 ENCODE Processing Pipeline 39fc52436e5ef8b2ecdc550dde48f11d https://www.encodeproject.org/files/ENCFF653ZMJ/@@download/ENCFF653ZMJ.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF999RIP bigBed narrowPeak optimal idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF653ZMJ 1514591 ENCODE Processing Pipeline fcc1d7488c6d8f1e03538c94a5e5eb7d https://www.encodeproject.org/files/ENCFF999RIP/@@download/ENCFF999RIP.bigBed hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF884GEQ bigWig fold change over control ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF212AOK, ENCFF414QJE, ENCFF691EEI 1042725070 ENCODE Processing Pipeline 7dab1fec0b8788bb3b541653648444b2 https://www.encodeproject.org/files/ENCFF884GEQ/@@download/ENCFF884GEQ.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF612RBJ bigWig signal p-value ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF212AOK, ENCFF414QJE, ENCFF691EEI 1031779537 ENCODE Processing Pipeline e32f351335ec8db420cfdd32bc135256 https://www.encodeproject.org/files/ENCFF612RBJ/@@download/ENCFF612RBJ.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF319FUX bigBed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF226BPT 11475260 ENCODE Processing Pipeline dc792af77472d80977e6d9bd7f0682b6 https://www.encodeproject.org/files/ENCFF319FUX/@@download/ENCFF319FUX.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF033ZLO bed narrowPeak conservative idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF226BPT, ENCFF419RSJ, ENCFF650APU, ENCFF923VDD 920812 ENCODE Processing Pipeline 25f619be02ccdffa1e6975df9df63374 https://www.encodeproject.org/files/ENCFF033ZLO/@@download/ENCFF033ZLO.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF955LRR bigBed narrowPeak optimal idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF588MSD 1509565 ENCODE Processing Pipeline b4fe1ce190089d200cf3269b37e18762 https://www.encodeproject.org/files/ENCFF955LRR/@@download/ENCFF955LRR.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF832UOL bigWig fold change over control ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF212AOK, ENCFF414QJE, ENCFF691EEI, ENCFF770VVI 1306579325 ENCODE Processing Pipeline 5bf90f1cbddaded0532fa59a8de0f690 https://www.encodeproject.org/files/ENCFF832UOL/@@download/ENCFF832UOL.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF588MSD bed narrowPeak optimal idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF226BPT, ENCFF419RSJ, ENCFF650APU, ENCFF923VDD 926115 ENCODE Processing Pipeline fa1ec2cbc7fe8e03a250fc0fba09b508 https://www.encodeproject.org/files/ENCFF588MSD/@@download/ENCFF588MSD.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF700FNE bigWig fold change over control ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF212AOK, ENCFF691EEI, ENCFF770VVI 678358612 ENCODE Processing Pipeline e4fd637f97a9a20e40020a8778356de1 https://www.encodeproject.org/files/ENCFF700FNE/@@download/ENCFF700FNE.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF650APU bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF212AOK, ENCFF414QJE, ENCFF691EEI 6377560 ENCODE Processing Pipeline ad9313c6bc974c6fd9687e1b1d0fb945 https://www.encodeproject.org/files/ENCFF650APU/@@download/ENCFF650APU.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF384DGW bigBed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF923VDD 14012967 ENCODE Processing Pipeline 10749a737de4aeecf01038c66db361d0 https://www.encodeproject.org/files/ENCFF384DGW/@@download/ENCFF384DGW.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF082CUO bigBed narrowPeak conservative idr thresholded peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF033ZLO 1504464 ENCODE Processing Pipeline 40afc4df3557f20286921ffeb34410c3 https://www.encodeproject.org/files/ENCFF082CUO/@@download/ENCFF082CUO.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF198VQA bigWig signal p-value ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF212AOK, ENCFF691EEI, ENCFF770VVI 939652666 ENCODE Processing Pipeline 171638156a5d727e760610b0cd54652e https://www.encodeproject.org/files/ENCFF198VQA/@@download/ENCFF198VQA.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF460DYA bigBed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF650APU 13873367 ENCODE Processing Pipeline 7108b6417bae0ce8cf00f193d5a6a514 https://www.encodeproject.org/files/ENCFF460DYA/@@download/ENCFF460DYA.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF436WYT bigWig signal p-value ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF212AOK, ENCFF414QJE, ENCFF691EEI, ENCFF770VVI 1299381933 ENCODE Processing Pipeline 1edd4d05e75f8ecbe0a6f6078ef7ffaa https://www.encodeproject.org/files/ENCFF436WYT/@@download/ENCFF436WYT.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF226BPT bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF212AOK, ENCFF691EEI, ENCFF770VVI 5634763 ENCODE Processing Pipeline f80517269f9e94edcabc637287c907d0 https://www.encodeproject.org/files/ENCFF226BPT/@@download/ENCFF226BPT.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF923VDD bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF212AOK, ENCFF414QJE, ENCFF691EEI, ENCFF770VVI 6572859 ENCODE Processing Pipeline 1c62bd009ca1a464401dcde9ae52a921 https://www.encodeproject.org/files/ENCFF923VDD/@@download/ENCFF923VDD.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF733ZTJ bam unfiltered alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EET, ENCFF807MUK 1337647996 ENCODE Processing Pipeline b982dad9f77271dec78da06b47c2112b https://www.encodeproject.org/files/ENCFF733ZTJ/@@download/ENCFF733ZTJ.bam hg19 released low read length, low read depth ENCFF656RPU bam unfiltered alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EES, ENCFF807MUK 1187958227 ENCODE Processing Pipeline c5d685b4963a890c0dc95d33123c0e10 https://www.encodeproject.org/files/ENCFF656RPU/@@download/ENCFF656RPU.bam hg19 released low read length, low read depth ENCFF594TUS bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 584646400 ENCODE Processing Pipeline 4822aeea7ca85771ae659b2a4b08e0b5 https://www.encodeproject.org/files/ENCFF594TUS/@@download/ENCFF594TUS.bigWig hg19 released low read length, low read depth ENCFF794ZAP bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 505731668 ENCODE Processing Pipeline 18a0575520d9402380a142f242d06b5b https://www.encodeproject.org/files/ENCFF794ZAP/@@download/ENCFF794ZAP.bigWig hg19 released low read length, low read depth ENCFF608GUA bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF335IPE, ENCFF845YHI, ENCFF879OQC, ENCFF899GZH 6485442 ENCODE Processing Pipeline 3c6a1d69c22cc2308208f4b1923c105b https://www.encodeproject.org/files/ENCFF608GUA/@@download/ENCFF608GUA.bed.gz hg19 released low read length, low read depth ENCFF924ENQ bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 4790813 ENCODE Processing Pipeline 1796f8c5ec325de31bd279836a44dc3e https://www.encodeproject.org/files/ENCFF924ENQ/@@download/ENCFF924ENQ.bed.gz hg19 released low read length, low read depth ENCFF194DPB bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 5260968 ENCODE Processing Pipeline 77912b8e64ebf6573a59dd80c16e9e84 https://www.encodeproject.org/files/ENCFF194DPB/@@download/ENCFF194DPB.bed.gz hg19 released low read length, low read depth ENCFF156HEN bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF194DPB 11112291 ENCODE Processing Pipeline e1146778fd6cb9d5dcee65d6e4e13f49 https://www.encodeproject.org/files/ENCFF156HEN/@@download/ENCFF156HEN.bigBed hg19 released low read length, low read depth ENCFF892PXY bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF924ENQ 10886735 ENCODE Processing Pipeline 8c10d9e5c073eaf2cdb82c86e07cfc5b https://www.encodeproject.org/files/ENCFF892PXY/@@download/ENCFF892PXY.bigBed hg19 released low read length, low read depth ENCFF195ODE bed narrowPeak optimal idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF194DPB, ENCFF608GUA, ENCFF924ENQ 66009 ENCODE Processing Pipeline a1e2f7cfe616efa0fd80d7f1210ba11f https://www.encodeproject.org/files/ENCFF195ODE/@@download/ENCFF195ODE.bed.gz hg19 released low read length, low read depth ENCFF908BDF bed narrowPeak conservative idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF194DPB, ENCFF608GUA, ENCFF924ENQ 53092 ENCODE Processing Pipeline 27709e05eca3ad07f1b446528ac5ec8d https://www.encodeproject.org/files/ENCFF908BDF/@@download/ENCFF908BDF.bed.gz hg19 released low read length, low read depth ENCFF158KDT bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF608GUA 13440173 ENCODE Processing Pipeline 4a5227e418ac8c0860dcc0c6f0fea2e9 https://www.encodeproject.org/files/ENCFF158KDT/@@download/ENCFF158KDT.bigBed hg19 released low read length, low read depth ENCFF546ACT bigBed narrowPeak conservative idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF908BDF 161981 ENCODE Processing Pipeline 6cf920b9a005d8befd5b4d31b098565a https://www.encodeproject.org/files/ENCFF546ACT/@@download/ENCFF546ACT.bigBed hg19 released low read length, low read depth ENCFF627BRM bigBed narrowPeak optimal idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF195ODE 183026 ENCODE Processing Pipeline d0c13d347a85a6375a3958696a6893fd https://www.encodeproject.org/files/ENCFF627BRM/@@download/ENCFF627BRM.bigBed hg19 released low read length, low read depth ENCFF002EES fastq reads ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 985508743 Michael Snyder, Stanford 6f8a7dcbc9fd7cdd1f516209b71ed0af SRA:SRR5111768 https://www.encodeproject.org/files/ENCFF002EES/@@download/ENCFF002EES.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, low read depth ENCFF002EET fastq reads ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 1085897224 Michael Snyder, Stanford 47eecdc52750bafc88707dad4f3652f8 SRA:SRR5111769 https://www.encodeproject.org/files/ENCFF002EET/@@download/ENCFF002EET.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, low read depth ENCFF845YHI bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EET, ENCFF807MUK 950173273 ENCODE Processing Pipeline e3275b8eb5a30f4bdeb1e56d60815834 https://www.encodeproject.org/files/ENCFF845YHI/@@download/ENCFF845YHI.bam hg19 released low read length, low read depth ENCFF899GZH bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EES, ENCFF807MUK 780721574 ENCODE Processing Pipeline 4be78d74dc41328f0db8180d9d159b9f https://www.encodeproject.org/files/ENCFF899GZH/@@download/ENCFF899GZH.bam hg19 released low read length, low read depth ENCFF638VAM bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 531444839 ENCODE Processing Pipeline 48c41b35b0d1c77132c71546f8514e5a https://www.encodeproject.org/files/ENCFF638VAM/@@download/ENCFF638VAM.bigWig hg19 archived low read length, low read depth ENCFF098RXY bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 572163482 ENCODE Processing Pipeline eba3eeb91ce50876a337c74b6b34b767 https://www.encodeproject.org/files/ENCFF098RXY/@@download/ENCFF098RXY.bigWig hg19 released low read length, low read depth ENCFF719AJG bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF335IPE, ENCFF845YHI, ENCFF879OQC, ENCFF899GZH 1042564575 ENCODE Processing Pipeline e99ef8be8e13ef2cc43cb018c47aa31a https://www.encodeproject.org/files/ENCFF719AJG/@@download/ENCFF719AJG.bigWig hg19 released low read length, low read depth ENCFF629UEA bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 433668177 ENCODE Processing Pipeline f0c41d8eacfb86590bc631a5288599cd https://www.encodeproject.org/files/ENCFF629UEA/@@download/ENCFF629UEA.bigWig hg19 released low read length, low read depth ENCFF812BKX bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 487279608 ENCODE Processing Pipeline 9fd679aa468ba482350676af7fb2a078 https://www.encodeproject.org/files/ENCFF812BKX/@@download/ENCFF812BKX.bigWig hg19 archived low read length, low read depth ENCFF963SBX bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF335IPE, ENCFF845YHI, ENCFF879OQC, ENCFF899GZH 1040302117 ENCODE Processing Pipeline 43254460826ced6742826b4af4aecf18 https://www.encodeproject.org/files/ENCFF963SBX/@@download/ENCFF963SBX.bigWig hg19 released low read length, low read depth ENCFF349DOV bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 4973568 ENCODE Processing Pipeline 5207521ced5ffdc41c59ac3c68d6ba0a https://www.encodeproject.org/files/ENCFF349DOV/@@download/ENCFF349DOV.bed.gz hg19 archived low read length, low read depth ENCFF076QRM bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 5395752 ENCODE Processing Pipeline 1ccda4371d5402a9011ac952a3684b18 https://www.encodeproject.org/files/ENCFF076QRM/@@download/ENCFF076QRM.bed.gz hg19 archived low read length, low read depth ENCFF207BTX bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF335IPE, ENCFF845YHI, ENCFF879OQC, ENCFF899GZH 6661666 ENCODE Processing Pipeline 154f6e3919a5d7f5e10f183b10139295 https://www.encodeproject.org/files/ENCFF207BTX/@@download/ENCFF207BTX.bed.gz hg19 archived low read length, low read depth ENCFF542SNG bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF076QRM 11160196 ENCODE Processing Pipeline c4eeb77de3ac1155bcbe855db33542f8 https://www.encodeproject.org/files/ENCFF542SNG/@@download/ENCFF542SNG.bigBed hg19 archived low read length, low read depth ENCFF126QDQ bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF349DOV 11043673 ENCODE Processing Pipeline 28df6ec81d5cbfade5973b2551e03d96 https://www.encodeproject.org/files/ENCFF126QDQ/@@download/ENCFF126QDQ.bigBed hg19 archived low read length, low read depth ENCFF697UJF bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF207BTX 13447250 ENCODE Processing Pipeline 4b548f764ae1b0aafbcc8a3d280c396b https://www.encodeproject.org/files/ENCFF697UJF/@@download/ENCFF697UJF.bigBed hg19 archived low read length, low read depth ENCFF373KYE bam unfiltered alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EES, ENCFF643CGH 1193532006 ENCODE Processing Pipeline e5bea9aee9c483c1771d4e9eb304805e https://www.encodeproject.org/files/ENCFF373KYE/@@download/ENCFF373KYE.bam GRCh38 released low read length, low read depth ENCFF573IUA bam unfiltered alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EET, ENCFF643CGH 1343260623 ENCODE Processing Pipeline 243fbb6f9ec621f51828f490162834d9 https://www.encodeproject.org/files/ENCFF573IUA/@@download/ENCFF573IUA.bam GRCh38 released low read length, low read depth ENCFF723QZO bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EES, ENCFF643CGH 780164998 ENCODE Processing Pipeline 90050b34443bd8d8af45808a1d169b2a https://www.encodeproject.org/files/ENCFF723QZO/@@download/ENCFF723QZO.bam GRCh38 released low read length, low read depth ENCFF019PLG bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EET, ENCFF643CGH 949517486 ENCODE Processing Pipeline fe88491db2639d100a87088ad62b7e86 https://www.encodeproject.org/files/ENCFF019PLG/@@download/ENCFF019PLG.bam GRCh38 released low read length, low read depth ENCFF230KJV bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF723QZO 463998331 ENCODE Processing Pipeline cf78948a9d9eb7ecf1615abbf918b50e https://www.encodeproject.org/files/ENCFF230KJV/@@download/ENCFF230KJV.bigWig GRCh38 released low read length, low read depth ENCFF486ZAJ bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF019PLG, ENCFF577FNG 531082069 ENCODE Processing Pipeline bed80eacee7975ee34f2846eb2cc8e36 https://www.encodeproject.org/files/ENCFF486ZAJ/@@download/ENCFF486ZAJ.bigWig GRCh38 released low read length, low read depth ENCFF977HVC bigWig signal p-value ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF019PLG, ENCFF156FED, ENCFF577FNG, ENCFF723QZO 992898202 ENCODE Processing Pipeline 3ca59bc94424a83183d0f4ffbc5bb75e https://www.encodeproject.org/files/ENCFF977HVC/@@download/ENCFF977HVC.bigWig GRCh38 released low read length, low read depth ENCFF987VLT bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF723QZO 440522614 ENCODE Processing Pipeline 4f6f4676e10c7c9915b0326561480d68 https://www.encodeproject.org/files/ENCFF987VLT/@@download/ENCFF987VLT.bigWig GRCh38 released low read length, low read depth ENCFF081NBD bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF019PLG, ENCFF577FNG 487466625 ENCODE Processing Pipeline 7fa945bde5b95d517f4dc1b6002ac58f https://www.encodeproject.org/files/ENCFF081NBD/@@download/ENCFF081NBD.bigWig GRCh38 released low read length, low read depth ENCFF255VEW bigWig fold change over control ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF019PLG, ENCFF156FED, ENCFF577FNG, ENCFF723QZO 1050649101 ENCODE Processing Pipeline cf1e11649c18d041021b78754b7ef2f5 https://www.encodeproject.org/files/ENCFF255VEW/@@download/ENCFF255VEW.bigWig GRCh38 released low read length, low read depth ENCFF533DZJ bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF723QZO 4678629 ENCODE Processing Pipeline 8506ba966dbf6e8327d47dadc58561c1 https://www.encodeproject.org/files/ENCFF533DZJ/@@download/ENCFF533DZJ.bed.gz GRCh38 released low read length, low read depth ENCFF934QVF bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF019PLG, ENCFF577FNG 5179144 ENCODE Processing Pipeline 47129b10bfb1bb266476ea39936c8ae9 https://www.encodeproject.org/files/ENCFF934QVF/@@download/ENCFF934QVF.bed.gz GRCh38 released low read length, low read depth ENCFF553ZMC bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF533DZJ 10864156 ENCODE Processing Pipeline bfabe28f7ab2937509e0d646c01c4e24 https://www.encodeproject.org/files/ENCFF553ZMC/@@download/ENCFF553ZMC.bigBed GRCh38 released low read length, low read depth ENCFF415SNS bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 ENCFF934QVF 11085096 ENCODE Processing Pipeline 0d834b96524e7ceac2527b69d68af96f https://www.encodeproject.org/files/ENCFF415SNS/@@download/ENCFF415SNS.bigBed GRCh38 released low read length, low read depth ENCFF622ORP bigBed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF991DCR 13447926 ENCODE Processing Pipeline ce9236fdb4d58fc9222d8711fdabcab3 https://www.encodeproject.org/files/ENCFF622ORP/@@download/ENCFF622ORP.bigBed GRCh38 released low read length, low read depth ENCFF991DCR bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF019PLG, ENCFF156FED, ENCFF577FNG, ENCFF723QZO 6410222 ENCODE Processing Pipeline 4f2cda43258cb7efbaa7bc1b27119059 https://www.encodeproject.org/files/ENCFF991DCR/@@download/ENCFF991DCR.bed.gz GRCh38 released low read length, low read depth ENCFF376CAG bed narrowPeak conservative idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF419RSJ, ENCFF533DZJ, ENCFF934QVF, ENCFF991DCR 50866 ENCODE Processing Pipeline 7e24417837434d49700cb933b824fd7e https://www.encodeproject.org/files/ENCFF376CAG/@@download/ENCFF376CAG.bed.gz GRCh38 released low read length, low read depth ENCFF684WYK bigBed narrowPeak conservative idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF376CAG 159425 ENCODE Processing Pipeline 202199ca312d545e61937fe96745ff7b https://www.encodeproject.org/files/ENCFF684WYK/@@download/ENCFF684WYK.bigBed GRCh38 released low read length, low read depth ENCFF835HVW bigBed narrowPeak optimal idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF495BPY 183904 ENCODE Processing Pipeline c47d5829155f771b8b8926d36859b50e https://www.encodeproject.org/files/ENCFF835HVW/@@download/ENCFF835HVW.bigBed GRCh38 released low read length, low read depth ENCFF495BPY bed narrowPeak optimal idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF419RSJ, ENCFF533DZJ, ENCFF934QVF, ENCFF991DCR 64861 ENCODE Processing Pipeline c8c48ba855f11cafe36a2332b9f617ab https://www.encodeproject.org/files/ENCFF495BPY/@@download/ENCFF495BPY.bed.gz GRCh38 released low read length, low read depth ENCFF223KKR bed narrowPeak optimal idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF076QRM, ENCFF207BTX, ENCFF349DOV 56943 ENCODE Processing Pipeline 1fb0605c8d59b50eb5d2ab330e5e849b https://www.encodeproject.org/files/ENCFF223KKR/@@download/ENCFF223KKR.bed.gz hg19 archived low read length, low read depth ENCFF851ICA bigBed narrowPeak conservative idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF519NQW 124342 ENCODE Processing Pipeline a7cb18f27cb223d56296fd13cdaf0eba https://www.encodeproject.org/files/ENCFF851ICA/@@download/ENCFF851ICA.bigBed hg19 archived low read length, low read depth ENCFF519NQW bed narrowPeak conservative idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF076QRM, ENCFF207BTX, ENCFF349DOV 43437 ENCODE Processing Pipeline 39b6c961d98a4133ee84974c428d7338 https://www.encodeproject.org/files/ENCFF519NQW/@@download/ENCFF519NQW.bed.gz hg19 archived low read length, low read depth ENCFF236JSK bigBed narrowPeak optimal idr thresholded peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF223KKR 142788 ENCODE Processing Pipeline 1205ad9c6099de2e4c74c2b39b1564ef https://www.encodeproject.org/files/ENCFF236JSK/@@download/ENCFF236JSK.bigBed hg19 archived low read length, low read depth ENCFF526SSV fastq reads ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 1 ENCFF953OIR 2016593006 Michael Snyder, Stanford 8072dbfa33db990f18028285d8484749 SRA:SRR6213501 https://www.encodeproject.org/files/ENCFF526SSV/@@download/ENCFF526SSV.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF953OIR fastq reads ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 2 ENCFF526SSV 2398662672 Michael Snyder, Stanford f7b6d6b3e14811bc4b55c651cd9127e7 SRA:SRR6213501 https://www.encodeproject.org/files/ENCFF953OIR/@@download/ENCFF953OIR.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF044ZTQ fastq reads ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 1 100 paired-ended 1 ENCFF119GEQ 1798621284 Michael Snyder, Stanford d7d8483f0202da630e6a4699fac27bbb SRA:SRR6213500 https://www.encodeproject.org/files/ENCFF044ZTQ/@@download/ENCFF044ZTQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF119GEQ fastq reads ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 1 100 paired-ended 2 ENCFF044ZTQ 2235343342 Michael Snyder, Stanford a5ba4e5cd8529806c9a7d1bf685a34af SRA:SRR6213500 https://www.encodeproject.org/files/ENCFF119GEQ/@@download/ENCFF119GEQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF323OVV bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 100 ENCFF526SSV, ENCFF643CGH, ENCFF953OIR 1781653811 ENCODE Processing Pipeline ee373bbb6646a852e170c5966ad8e761 https://www.encodeproject.org/files/ENCFF323OVV/@@download/ENCFF323OVV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046NKU bam unfiltered alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 100 ENCFF526SSV, ENCFF643CGH, ENCFF953OIR 3652893650 ENCODE Processing Pipeline c56bb22ed2977801ede40fd7c57167c7 https://www.encodeproject.org/files/ENCFF046NKU/@@download/ENCFF046NKU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF050VHP bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 100 ENCFF044ZTQ, ENCFF119GEQ, ENCFF643CGH 2013224462 ENCODE Processing Pipeline 5b3de0ed22cfced6f3bf837f0c7875f3 https://www.encodeproject.org/files/ENCFF050VHP/@@download/ENCFF050VHP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF348VWO bam unfiltered alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 100 ENCFF044ZTQ, ENCFF119GEQ, ENCFF643CGH 3473192040 ENCODE Processing Pipeline a8e5c0cc8334bc61428f0394143c85c1 https://www.encodeproject.org/files/ENCFF348VWO/@@download/ENCFF348VWO.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF841BIG bigWig signal p-value ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF050VHP, ENCFF712WXB 994289291 ENCODE Processing Pipeline 051634c77b0953469576ec43df96599b https://www.encodeproject.org/files/ENCFF841BIG/@@download/ENCFF841BIG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF300BUS bigWig fold change over control ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF050VHP, ENCFF712WXB 893983044 ENCODE Processing Pipeline a6a3e03d39263d00b3f1907e563a8533 https://www.encodeproject.org/files/ENCFF300BUS/@@download/ENCFF300BUS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF266DPA bigWig fold change over control ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF050VHP, ENCFF323OVV, ENCFF712WXB, ENCFF790TAN 1684420804 ENCODE Processing Pipeline c14451f7a0fe0135da44e72930203117 https://www.encodeproject.org/files/ENCFF266DPA/@@download/ENCFF266DPA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF149RWE bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF050VHP, ENCFF712WXB 6108809 ENCODE Processing Pipeline 6109305575c2038a9ac763bc2601ca60 https://www.encodeproject.org/files/ENCFF149RWE/@@download/ENCFF149RWE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF934ERJ bigWig fold change over control ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF323OVV, ENCFF790TAN 821188570 ENCODE Processing Pipeline c2d6d102ab77b4a2e86924cf383301a4 https://www.encodeproject.org/files/ENCFF934ERJ/@@download/ENCFF934ERJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF704BJM bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF050VHP, ENCFF323OVV, ENCFF712WXB, ENCFF790TAN 6825762 ENCODE Processing Pipeline 60bd65ba180ed945738f9c9a301fbd09 https://www.encodeproject.org/files/ENCFF704BJM/@@download/ENCFF704BJM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF578MGX bigBed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF149RWE 13275798 ENCODE Processing Pipeline f4be91113dd1c4a0d841ef33d20ea6c1 https://www.encodeproject.org/files/ENCFF578MGX/@@download/ENCFF578MGX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF383UXK bigBed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF704BJM 13384118 ENCODE Processing Pipeline da4c90245da26bfd23576cc84a488ada https://www.encodeproject.org/files/ENCFF383UXK/@@download/ENCFF383UXK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF284MVH bigBed narrowPeak conservative idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF892JRL 322343 ENCODE Processing Pipeline e1243e6ebcffb13f4e81c98f7c29bc58 https://www.encodeproject.org/files/ENCFF284MVH/@@download/ENCFF284MVH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF355GCP bigBed narrowPeak optimal idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF543INR 389811 ENCODE Processing Pipeline f325cda3094a1ba1e711e7bae69f1630 https://www.encodeproject.org/files/ENCFF355GCP/@@download/ENCFF355GCP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF179STO bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF323OVV, ENCFF790TAN 5345337 ENCODE Processing Pipeline 91f2d2ae76bd5a625dd9df8faedc3de1 https://www.encodeproject.org/files/ENCFF179STO/@@download/ENCFF179STO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF664ZKQ bigBed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF179STO 11098764 ENCODE Processing Pipeline 278f8f1436fc3aba0bdc2f4f65eebfdc https://www.encodeproject.org/files/ENCFF664ZKQ/@@download/ENCFF664ZKQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF606XOK bigWig signal p-value ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF323OVV, ENCFF790TAN 850562121 ENCODE Processing Pipeline a26600ab9840c25c74b5dbc9b1f5fa2e https://www.encodeproject.org/files/ENCFF606XOK/@@download/ENCFF606XOK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF494TLB bigWig signal p-value ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF050VHP, ENCFF323OVV, ENCFF712WXB, ENCFF790TAN 1438410992 ENCODE Processing Pipeline 15786098f09bbd398ed4e748d743bd74 https://www.encodeproject.org/files/ENCFF494TLB/@@download/ENCFF494TLB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF892JRL bed narrowPeak conservative idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF149RWE, ENCFF179STO, ENCFF419RSJ, ENCFF704BJM 140262 ENCODE Processing Pipeline f1edede9343904bb8493f30cd8856353 https://www.encodeproject.org/files/ENCFF892JRL/@@download/ENCFF892JRL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF543INR bed narrowPeak optimal idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF149RWE, ENCFF179STO, ENCFF419RSJ, ENCFF704BJM 185965 ENCODE Processing Pipeline 0807855b6152ba7abf613dc780f4056b https://www.encodeproject.org/files/ENCFF543INR/@@download/ENCFF543INR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF388BJW bam unfiltered alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 100 ENCFF044ZTQ, ENCFF119GEQ, ENCFF807MUK 3474044964 ENCODE Processing Pipeline 8b524722aa147ba42e52f0c282773a93 https://www.encodeproject.org/files/ENCFF388BJW/@@download/ENCFF388BJW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF714GLD bam unfiltered alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 100 ENCFF526SSV, ENCFF807MUK, ENCFF953OIR 3656826444 ENCODE Processing Pipeline 067a76f1bbe5bb04115cbc17b2e56694 https://www.encodeproject.org/files/ENCFF714GLD/@@download/ENCFF714GLD.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF581FCG bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 100 ENCFF044ZTQ, ENCFF119GEQ, ENCFF807MUK 2012324178 ENCODE Processing Pipeline c97865a67a8c9195574c03877d5a3a11 https://www.encodeproject.org/files/ENCFF581FCG/@@download/ENCFF581FCG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF514PZW bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 100 ENCFF526SSV, ENCFF807MUK, ENCFF953OIR 1781225085 ENCODE Processing Pipeline bbe8c615efc2faa725f6a9a64d2b1367 https://www.encodeproject.org/files/ENCFF514PZW/@@download/ENCFF514PZW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF459SUD bigWig signal p-value ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF581FCG, ENCFF834TUP 976611443 ENCODE Processing Pipeline 49715d90ff3ccac5c74a6f9a3de0f867 https://www.encodeproject.org/files/ENCFF459SUD/@@download/ENCFF459SUD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF004IKJ bed narrowPeak conservative idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF001TDO, ENCFF197DMK, ENCFF251WTS, ENCFF901YWM 138381 ENCODE Processing Pipeline fa45d1dec52953777e82144dfba0cb63 https://www.encodeproject.org/files/ENCFF004IKJ/@@download/ENCFF004IKJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF549RTD bigWig signal p-value ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF160VXC, ENCFF514PZW 864644218 ENCODE Processing Pipeline 182b23974dc1599d620383278635e767 https://www.encodeproject.org/files/ENCFF549RTD/@@download/ENCFF549RTD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF900JVT bigWig signal p-value ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF160VXC, ENCFF514PZW, ENCFF581FCG, ENCFF834TUP 1682007451 ENCODE Processing Pipeline 0491dee9f8a6c2ff202504258497a329 https://www.encodeproject.org/files/ENCFF900JVT/@@download/ENCFF900JVT.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF179LCW bigWig fold change over control ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF160VXC, ENCFF514PZW 821891833 ENCODE Processing Pipeline 38be5f44efc6be5a355bd91e9a279573 https://www.encodeproject.org/files/ENCFF179LCW/@@download/ENCFF179LCW.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF659MUO bigWig fold change over control ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF581FCG, ENCFF834TUP 892461775 ENCODE Processing Pipeline 37b76e271a401ae152345044c6a93af1 https://www.encodeproject.org/files/ENCFF659MUO/@@download/ENCFF659MUO.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF036PQP bigWig fold change over control ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF160VXC, ENCFF514PZW, ENCFF581FCG, ENCFF834TUP 1680857476 ENCODE Processing Pipeline 59d2c4f9466c9c16d59a03eea2924049 https://www.encodeproject.org/files/ENCFF036PQP/@@download/ENCFF036PQP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF901YWM bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF160VXC, ENCFF514PZW 5344856 ENCODE Processing Pipeline 113821c7722aea3564c1cdcf523ba6b4 https://www.encodeproject.org/files/ENCFF901YWM/@@download/ENCFF901YWM.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF251WTS bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF581FCG, ENCFF834TUP 6169947 ENCODE Processing Pipeline 6957338f2ef6045cc9d16ab633b71c0b https://www.encodeproject.org/files/ENCFF251WTS/@@download/ENCFF251WTS.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF197DMK bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF160VXC, ENCFF514PZW, ENCFF581FCG, ENCFF834TUP 6822837 ENCODE Processing Pipeline 04d9d6ab389f32c6f14fc731e5b9d0e3 https://www.encodeproject.org/files/ENCFF197DMK/@@download/ENCFF197DMK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF941RWS bigBed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 ENCFF901YWM 11081624 ENCODE Processing Pipeline 99fec5212850b08710725cd8b7c780dd https://www.encodeproject.org/files/ENCFF941RWS/@@download/ENCFF941RWS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF705HIP bigBed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 ENCFF251WTS 13264012 ENCODE Processing Pipeline 39d1530466bd4b1827c7dd569a1c6679 https://www.encodeproject.org/files/ENCFF705HIP/@@download/ENCFF705HIP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF940SRZ bigBed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF197DMK 13368186 ENCODE Processing Pipeline 053a602a107576376a0e97b1f3447d37 https://www.encodeproject.org/files/ENCFF940SRZ/@@download/ENCFF940SRZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF658OPS bigBed narrowPeak conservative idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF004IKJ 318663 ENCODE Processing Pipeline d5d9ba75e6a44e9cf500ff68918cbd68 https://www.encodeproject.org/files/ENCFF658OPS/@@download/ENCFF658OPS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF280GTU bed narrowPeak optimal idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF001TDO, ENCFF197DMK, ENCFF251WTS, ENCFF901YWM 190738 ENCODE Processing Pipeline d3745e7133f56987c46493d8e6d4c989 https://www.encodeproject.org/files/ENCFF280GTU/@@download/ENCFF280GTU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF105LAG bigBed narrowPeak optimal idr thresholded peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5, 6 ENCFF280GTU 394596 ENCODE Processing Pipeline 826835c3b66bcf8bc1904fca86f991df https://www.encodeproject.org/files/ENCFF105LAG/@@download/ENCFF105LAG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF144MVR fastq reads ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF549XBX 3382279191 Michael Snyder, Stanford 2c8fcb3744bc4b2814fbe45b118678ef https://www.encodeproject.org/files/ENCFF144MVR/@@download/ENCFF144MVR.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF549XBX fastq reads ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF144MVR 3705994889 Michael Snyder, Stanford 07cdca881b29734ef11c6c3623998645 https://www.encodeproject.org/files/ENCFF549XBX/@@download/ENCFF549XBX.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF838ILR fastq reads ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF385CVM 3223194979 Michael Snyder, Stanford 0ecb602840158c87f9696942d3dbc3c0 https://www.encodeproject.org/files/ENCFF838ILR/@@download/ENCFF838ILR.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF385CVM fastq reads ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF838ILR 3000351501 Michael Snyder, Stanford edb306cab91e6ee93167fd18d7784041 https://www.encodeproject.org/files/ENCFF385CVM/@@download/ENCFF385CVM.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF567ICY bam unfiltered alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF385CVM, ENCFF807MUK, ENCFF838ILR 6092352217 ENCODE Processing Pipeline 86ec8bdb2ef28533498670fb9bc0f525 https://www.encodeproject.org/files/ENCFF567ICY/@@download/ENCFF567ICY.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF689ZPF bam unfiltered alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF385CVM, ENCFF643CGH, ENCFF838ILR 6101529751 ENCODE Processing Pipeline c5892a0a517af510349d66f0df21394e https://www.encodeproject.org/files/ENCFF689ZPF/@@download/ENCFF689ZPF.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF716BLV bam unfiltered alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF144MVR, ENCFF549XBX, ENCFF643CGH 6838702192 ENCODE Processing Pipeline ce56e578c2cdc7853746acca620f8ac9 https://www.encodeproject.org/files/ENCFF716BLV/@@download/ENCFF716BLV.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF734KGE bam unfiltered alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF144MVR, ENCFF549XBX, ENCFF807MUK 6830508270 ENCODE Processing Pipeline 30d394e377b4bb705bad261200d7f64b https://www.encodeproject.org/files/ENCFF734KGE/@@download/ENCFF734KGE.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF941ENT bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF385CVM, ENCFF643CGH, ENCFF838ILR 4962774636 ENCODE Processing Pipeline 821dbf31b10baafad65e246886b3bfe7 https://www.encodeproject.org/files/ENCFF941ENT/@@download/ENCFF941ENT.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF413UYN bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF385CVM, ENCFF807MUK, ENCFF838ILR 4957719538 ENCODE Processing Pipeline 02a55d7d096f626ddbf2e4c8ec9eaae1 https://www.encodeproject.org/files/ENCFF413UYN/@@download/ENCFF413UYN.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF314DOH bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF144MVR, ENCFF549XBX, ENCFF807MUK 5116022440 ENCODE Processing Pipeline c3fe080dfb7662073fe385c2679dc234 https://www.encodeproject.org/files/ENCFF314DOH/@@download/ENCFF314DOH.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF495HQQ bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF144MVR, ENCFF549XBX, ENCFF643CGH 5121155187 ENCODE Processing Pipeline b5646c9d08191650a76df21a2b280d1d https://www.encodeproject.org/files/ENCFF495HQQ/@@download/ENCFF495HQQ.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF919XQS bigWig signal p-value ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF413UYN, ENCFF834TUP 1881568244 ENCODE Processing Pipeline 8a913200262e50bc334c1180fb0f3bc2 https://www.encodeproject.org/files/ENCFF919XQS/@@download/ENCFF919XQS.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF752DMI bigWig signal p-value ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF314DOH, ENCFF834TUP 1429953543 ENCODE Processing Pipeline a2c5bd48cd700e9c39cd2c0eb2bcabe4 https://www.encodeproject.org/files/ENCFF752DMI/@@download/ENCFF752DMI.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF024WMC bigWig signal p-value ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF314DOH, ENCFF413UYN, ENCFF834TUP 2420688435 ENCODE Processing Pipeline ef7c219a0ba42c34266f5faf0ab7caa3 https://www.encodeproject.org/files/ENCFF024WMC/@@download/ENCFF024WMC.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF002GPT bigWig fold change over control ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF413UYN, ENCFF834TUP 1980080252 ENCODE Processing Pipeline b1b8f98dc827f95b3858309aeb95069b https://www.encodeproject.org/files/ENCFF002GPT/@@download/ENCFF002GPT.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF970NMW bigWig fold change over control ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF314DOH, ENCFF834TUP 1553412462 ENCODE Processing Pipeline ea928ee10fea3a1ae710ea264a8cef66 https://www.encodeproject.org/files/ENCFF970NMW/@@download/ENCFF970NMW.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF645ZBF bigWig fold change over control ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF314DOH, ENCFF413UYN, ENCFF834TUP 2534451811 ENCODE Processing Pipeline c42f5f087093eab3316b957886be3358 https://www.encodeproject.org/files/ENCFF645ZBF/@@download/ENCFF645ZBF.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF809LWB bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF413UYN, ENCFF834TUP 7045721 ENCODE Processing Pipeline c6282301855b3803875411aa81deaee3 https://www.encodeproject.org/files/ENCFF809LWB/@@download/ENCFF809LWB.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF676OHT bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF314DOH, ENCFF834TUP 6953879 ENCODE Processing Pipeline 87d3691a0c6d969aeb56a7364ef2b65b https://www.encodeproject.org/files/ENCFF676OHT/@@download/ENCFF676OHT.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF208GKL bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF314DOH, ENCFF413UYN, ENCFF834TUP 7209568 ENCODE Processing Pipeline 4cfd366e6eee1a6eec4215051bf7afef https://www.encodeproject.org/files/ENCFF208GKL/@@download/ENCFF208GKL.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF607IDF bigBed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF676OHT 11135375 ENCODE Processing Pipeline bb95eaa2babb91df7d7d6366d4ca4a56 https://www.encodeproject.org/files/ENCFF607IDF/@@download/ENCFF607IDF.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF076XPO bigBed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF809LWB 10970480 ENCODE Processing Pipeline 66da506198956eb1c4f1c195bab88f3f https://www.encodeproject.org/files/ENCFF076XPO/@@download/ENCFF076XPO.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF469IZX bigBed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF208GKL 10858895 ENCODE Processing Pipeline faa75e1f4e56342157a07833173413b3 https://www.encodeproject.org/files/ENCFF469IZX/@@download/ENCFF469IZX.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF550NJW bed narrowPeak conservative idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF208GKL, ENCFF676OHT, ENCFF809LWB 47427 ENCODE Processing Pipeline 468b2e1f241a62c4e35c62cffe163f4b https://www.encodeproject.org/files/ENCFF550NJW/@@download/ENCFF550NJW.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF914RFS bed narrowPeak optimal idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF208GKL, ENCFF676OHT, ENCFF809LWB 59210 ENCODE Processing Pipeline 289ffb2b564ccc8cc2ef594a4cfcf6d4 https://www.encodeproject.org/files/ENCFF914RFS/@@download/ENCFF914RFS.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF689TVN bigBed narrowPeak conservative idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF849ADE 132807 ENCODE Processing Pipeline f340b14f89b974d4a2ec0241acb1da3f https://www.encodeproject.org/files/ENCFF689TVN/@@download/ENCFF689TVN.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF518VTD bigBed narrowPeak optimal idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF153SST 148960 ENCODE Processing Pipeline 8c4e3a2c395af5d65155b6631f6a121f https://www.encodeproject.org/files/ENCFF518VTD/@@download/ENCFF518VTD.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF848DRV bigWig signal p-value ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF941ENT 1591429089 ENCODE Processing Pipeline 748e3f877fe393db127359c232d52dfe https://www.encodeproject.org/files/ENCFF848DRV/@@download/ENCFF848DRV.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF087TYN bigWig signal p-value ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF495HQQ, ENCFF712WXB 1326540172 ENCODE Processing Pipeline e7bf0c7d06b2c5250bd6d64d1e9d680f https://www.encodeproject.org/files/ENCFF087TYN/@@download/ENCFF087TYN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF945OIV bigWig signal p-value ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF495HQQ, ENCFF712WXB, ENCFF790TAN, ENCFF941ENT 2451213103 ENCODE Processing Pipeline fbfc7d0bfa567155399df2390a6ed88c https://www.encodeproject.org/files/ENCFF945OIV/@@download/ENCFF945OIV.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF184OFZ bigWig fold change over control ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF941ENT 1952576271 ENCODE Processing Pipeline 77a751786907cf68724310703db9ae52 https://www.encodeproject.org/files/ENCFF184OFZ/@@download/ENCFF184OFZ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF877JNZ bigWig fold change over control ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF495HQQ, ENCFF712WXB 1548027499 ENCODE Processing Pipeline 4b99d9daf11d3e0a54a5e3754c5e6d37 https://www.encodeproject.org/files/ENCFF877JNZ/@@download/ENCFF877JNZ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF526WXA bigWig fold change over control ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF495HQQ, ENCFF712WXB, ENCFF790TAN, ENCFF941ENT 2560979951 ENCODE Processing Pipeline ebf733036d83797ffc92028f8e053ce1 https://www.encodeproject.org/files/ENCFF526WXA/@@download/ENCFF526WXA.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF898JPZ bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF712WXB, ENCFF790TAN, ENCFF941ENT 6994500 ENCODE Processing Pipeline be87f866744c23aeed7d76240383d2d3 https://www.encodeproject.org/files/ENCFF898JPZ/@@download/ENCFF898JPZ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF515YDX bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF495HQQ, ENCFF712WXB 6826636 ENCODE Processing Pipeline 763a932d195bf3d288e513dbe6ae4dc5 https://www.encodeproject.org/files/ENCFF515YDX/@@download/ENCFF515YDX.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF785KHZ bigBed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF898JPZ 10984257 ENCODE Processing Pipeline 03f5f5e8b0d3abb5821e0e4c81d6a5e2 https://www.encodeproject.org/files/ENCFF785KHZ/@@download/ENCFF785KHZ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF614DYM bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF495HQQ, ENCFF712WXB, ENCFF790TAN, ENCFF941ENT 7206887 ENCODE Processing Pipeline 4f03e0c728edae1ca01d8a665f649623 https://www.encodeproject.org/files/ENCFF614DYM/@@download/ENCFF614DYM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF973OJR bigBed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF515YDX 11153808 ENCODE Processing Pipeline dcae96516bca487cf0b074f6e9aa01b5 https://www.encodeproject.org/files/ENCFF973OJR/@@download/ENCFF973OJR.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF944XOJ bigBed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF614DYM 10858384 ENCODE Processing Pipeline 120438273b21fc3f98fd6987733ca341 https://www.encodeproject.org/files/ENCFF944XOJ/@@download/ENCFF944XOJ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF071SOH bed narrowPeak optimal idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF515YDX, ENCFF614DYM, ENCFF898JPZ 58213 ENCODE Processing Pipeline 03d66020b0efbe75962febcd75003fc8 https://www.encodeproject.org/files/ENCFF071SOH/@@download/ENCFF071SOH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF989AVX bed narrowPeak conservative idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF515YDX, ENCFF614DYM, ENCFF898JPZ 47896 ENCODE Processing Pipeline 00180fa82592652220b2869e9670b4dd https://www.encodeproject.org/files/ENCFF989AVX/@@download/ENCFF989AVX.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF523VEA bigBed narrowPeak conservative idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF989AVX 135208 ENCODE Processing Pipeline 09a237b9e18d72183e6535313cf5e1f9 https://www.encodeproject.org/files/ENCFF523VEA/@@download/ENCFF523VEA.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF982DCX bigBed narrowPeak optimal idr thresholded peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF071SOH 149162 ENCODE Processing Pipeline 2f8863d7e4d87a201499d31d5ae93a4b https://www.encodeproject.org/files/ENCFF982DCX/@@download/ENCFF982DCX.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF922GDY fastq reads ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 1 76 paired-ended 1 ENCFF029YOE 1872141956 Bradley Bernstein, Broad 739d9ab253e383f080ac56cb1e0075e3 https://www.encodeproject.org/files/ENCFF922GDY/@@download/ENCFF922GDY.fastq.gz Illumina HiSeq 2500 /files/ENCFF413RQG/ released mixed run types, inconsistent control read length, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF029YOE fastq reads ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 1 76 paired-ended 2 ENCFF922GDY 1830352522 Bradley Bernstein, Broad 86a935e8b382bda2d1fe9dab4f88da8c https://www.encodeproject.org/files/ENCFF029YOE/@@download/ENCFF029YOE.fastq.gz Illumina HiSeq 2500 /files/ENCFF827YXC/ released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF254OVT fastq reads ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 1 76 single-ended 1331172398 Bradley Bernstein, Broad 01a8b98f8bc6628afd36e51e068c45ac https://www.encodeproject.org/files/ENCFF254OVT/@@download/ENCFF254OVT.fastq.gz Illumina HiSeq 2500 /files/ENCFF048ZOQ/, /files/ENCFF796ERZ/, /files/ENCFF957PGR/ released mixed run types, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF758IZH fastq reads ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 1 76 single-ended 1309207717 Bradley Bernstein, Broad fe0f3e8eb525f21f91c16dc3a90c2f90 https://www.encodeproject.org/files/ENCFF758IZH/@@download/ENCFF758IZH.fastq.gz Illumina HiSeq 2500 /files/ENCFF048ZOQ/, /files/ENCFF796ERZ/, /files/ENCFF957PGR/ released mixed run types, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF547ENY bam unfiltered alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 36 ENCFF254OVT, ENCFF643CGH, ENCFF758IZH 1712042308 ENCODE Processing Pipeline 0ceed1e7856edef70404b77da5b49402 https://www.encodeproject.org/files/ENCFF547ENY/@@download/ENCFF547ENY.bam GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF065JMG bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 36 ENCFF643CGH, ENCFF922GDY 967565699 ENCODE Processing Pipeline 943522c8df5fdb97d986b1c547641470 https://www.encodeproject.org/files/ENCFF065JMG/@@download/ENCFF065JMG.bam GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF088YPT bam unfiltered alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 36 ENCFF643CGH, ENCFF922GDY 1392745299 ENCODE Processing Pipeline 7cb01ff1982c2577061d4c597a59a80b https://www.encodeproject.org/files/ENCFF088YPT/@@download/ENCFF088YPT.bam GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF766AOQ bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 36 ENCFF254OVT, ENCFF758IZH, ENCFF807MUK 1176658034 ENCODE Processing Pipeline d1ec8e4b827fc6db9a249b0569970875 https://www.encodeproject.org/files/ENCFF766AOQ/@@download/ENCFF766AOQ.bam hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF563GRK bam unfiltered alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 36 ENCFF254OVT, ENCFF758IZH, ENCFF807MUK 1701454262 ENCODE Processing Pipeline 6eadf24aa35088cda63203137b029ca8 https://www.encodeproject.org/files/ENCFF563GRK/@@download/ENCFF563GRK.bam hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF991ZBF bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 36 ENCFF254OVT, ENCFF643CGH, ENCFF758IZH 1176504981 ENCODE Processing Pipeline 80f884ca171b1341913a34e43a603ee8 https://www.encodeproject.org/files/ENCFF991ZBF/@@download/ENCFF991ZBF.bam GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF394JPJ bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 36 ENCFF807MUK, ENCFF922GDY 967704432 ENCODE Processing Pipeline 8a02154d7b4e571205a80b1217edf855 https://www.encodeproject.org/files/ENCFF394JPJ/@@download/ENCFF394JPJ.bam hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF065SPB bam unfiltered alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 36 ENCFF807MUK, ENCFF922GDY 1386625709 ENCODE Processing Pipeline ed1c5f8caf89cc8be868daf95e04c9f8 https://www.encodeproject.org/files/ENCFF065SPB/@@download/ENCFF065SPB.bam hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF786RHY bigWig signal p-value ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT 965556869 ENCODE Processing Pipeline 8220852996bbf2b9f1bc96300cb0a71d https://www.encodeproject.org/files/ENCFF786RHY/@@download/ENCFF786RHY.bigWig hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF700XUR bigWig fold change over control ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF766AOQ 1066933419 ENCODE Processing Pipeline 3ca52a29c05ad8b9257b068d141edb3a https://www.encodeproject.org/files/ENCFF700XUR/@@download/ENCFF700XUR.bigWig hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF539HPD bigBed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF905USH 13108146 ENCODE Processing Pipeline 8baa0fda9cde6843459d254208d1fdbf https://www.encodeproject.org/files/ENCFF539HPD/@@download/ENCFF539HPD.bigBed hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF202LAC bigWig fold change over control ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT 870107379 ENCODE Processing Pipeline ddda6d18048086505de73e2783f6f35d https://www.encodeproject.org/files/ENCFF202LAC/@@download/ENCFF202LAC.bigWig hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF703XKN bigBed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF782VWT 13057245 ENCODE Processing Pipeline 82578b00709fd1fea2698bc216848546 https://www.encodeproject.org/files/ENCFF703XKN/@@download/ENCFF703XKN.bigBed hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF919EAR bigWig signal p-value ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF766AOQ 1116109547 ENCODE Processing Pipeline ae02303b12a5a02bd57df2b5b89a1775 https://www.encodeproject.org/files/ENCFF919EAR/@@download/ENCFF919EAR.bigWig hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF837TTM bigWig signal p-value ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT, ENCFF766AOQ 1418283288 ENCODE Processing Pipeline 90af5db63ef3c392d7a4daaf6f0175fe https://www.encodeproject.org/files/ENCFF837TTM/@@download/ENCFF837TTM.bigWig hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF984RWK bigBed narrowPeak conservative idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF505ABC 95348 ENCODE Processing Pipeline 6b48b468266528a8f91ed21933b2436a https://www.encodeproject.org/files/ENCFF984RWK/@@download/ENCFF984RWK.bigBed hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF769NCM bed narrowPeak optimal idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF014MFB, ENCFF782VWT, ENCFF905USH 13732 ENCODE Processing Pipeline 81fa11809db03d52ce78b886f3c317fc https://www.encodeproject.org/files/ENCFF769NCM/@@download/ENCFF769NCM.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF905USH bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF766AOQ 6730166 ENCODE Processing Pipeline 03fb4667c800aa7b1ecdb0abb28024de https://www.encodeproject.org/files/ENCFF905USH/@@download/ENCFF905USH.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF014MFB bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT, ENCFF766AOQ 7110529 ENCODE Processing Pipeline 6931b17d7054f00997c3205bf782d909 https://www.encodeproject.org/files/ENCFF014MFB/@@download/ENCFF014MFB.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF700NRD bigWig fold change over control ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT, ENCFF766AOQ 1398777491 ENCODE Processing Pipeline 2cac2598f2d94f78309b07fae786b933 https://www.encodeproject.org/files/ENCFF700NRD/@@download/ENCFF700NRD.bigWig hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF836HIH bigBed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF014MFB 12895671 ENCODE Processing Pipeline 634ac0b4807b1ffa79a257378ba4bc7c https://www.encodeproject.org/files/ENCFF836HIH/@@download/ENCFF836HIH.bigBed hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF505ABC bed narrowPeak conservative idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF001TDO, ENCFF014MFB, ENCFF782VWT, ENCFF905USH 13334 ENCODE Processing Pipeline cfea17bb5d315ab1aa467991073139db https://www.encodeproject.org/files/ENCFF505ABC/@@download/ENCFF505ABC.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF269SIL bigBed narrowPeak optimal idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF769NCM 96387 ENCODE Processing Pipeline f3662a3c310b9f339987d7ea7c7b2e3b https://www.encodeproject.org/files/ENCFF269SIL/@@download/ENCFF269SIL.bigBed hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF782VWT bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT 6454259 ENCODE Processing Pipeline 519bf4937d6fa21d96d52ddd303d57db https://www.encodeproject.org/files/ENCFF782VWT/@@download/ENCFF782VWT.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF267NFB bigBed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF520DDS 12926002 ENCODE Processing Pipeline 8bf81e12e449e78c2cc9dfce51991732 https://www.encodeproject.org/files/ENCFF267NFB/@@download/ENCFF267NFB.bigBed GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF563XBZ bigWig signal p-value ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF064LQH, ENCFF065JMG, ENCFF889VIV 940967085 ENCODE Processing Pipeline 99efffe2bc580c75fc9e295ef7b1ef82 https://www.encodeproject.org/files/ENCFF563XBZ/@@download/ENCFF563XBZ.bigWig GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF428JCL bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF064LQH, ENCFF889VIV, ENCFF991ZBF 6661246 ENCODE Processing Pipeline 28f3946769289deeaa96df608e89410c https://www.encodeproject.org/files/ENCFF428JCL/@@download/ENCFF428JCL.bed.gz GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF958KKL bigWig fold change over control ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF064LQH, ENCFF065JMG, ENCFF889VIV 869676869 ENCODE Processing Pipeline 7afa815b949e41625ad1d55f785d47e7 https://www.encodeproject.org/files/ENCFF958KKL/@@download/ENCFF958KKL.bigWig GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF371DFX bigWig fold change over control ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF064LQH, ENCFF889VIV, ENCFF991ZBF 1058289660 ENCODE Processing Pipeline 823f66a8023af8c91597e17c180f8739 https://www.encodeproject.org/files/ENCFF371DFX/@@download/ENCFF371DFX.bigWig GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF894UGV bigBed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF901VIO 13059705 ENCODE Processing Pipeline 96e4b736fb8fe56e0d4748191e1e9f1b https://www.encodeproject.org/files/ENCFF894UGV/@@download/ENCFF894UGV.bigBed GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF500DHW bigBed narrowPeak optimal idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF926EZW 102608 ENCODE Processing Pipeline fa82bb6d5dd8366adc301d15d043bce9 https://www.encodeproject.org/files/ENCFF500DHW/@@download/ENCFF500DHW.bigBed GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF968FQZ bigWig signal p-value ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF064LQH, ENCFF065JMG, ENCFF889VIV, ENCFF991ZBF 1265972510 ENCODE Processing Pipeline db98aa5fe8aa8ac79d6a554d7ba1becf https://www.encodeproject.org/files/ENCFF968FQZ/@@download/ENCFF968FQZ.bigWig GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF901VIO bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF064LQH, ENCFF065JMG, ENCFF889VIV 6449566 ENCODE Processing Pipeline e45608ca6116e691cd6639cee8cdc676 https://www.encodeproject.org/files/ENCFF901VIO/@@download/ENCFF901VIO.bed.gz GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF520DDS bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF064LQH, ENCFF065JMG, ENCFF889VIV, ENCFF991ZBF 7104704 ENCODE Processing Pipeline 3f454d32f8a78a23f0b0e7dd9035a8da https://www.encodeproject.org/files/ENCFF520DDS/@@download/ENCFF520DDS.bed.gz GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF276AQT bigBed narrowPeak conservative idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF806ESQ 94248 ENCODE Processing Pipeline 954a2f292e965583b63e55827dd028a8 https://www.encodeproject.org/files/ENCFF276AQT/@@download/ENCFF276AQT.bigBed GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF325FRW bigWig signal p-value ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF064LQH, ENCFF889VIV, ENCFF991ZBF 954061929 ENCODE Processing Pipeline e3f988b52499b1abfef63584f4fc3e97 https://www.encodeproject.org/files/ENCFF325FRW/@@download/ENCFF325FRW.bigWig GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF604ZUW bigWig fold change over control ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF064LQH, ENCFF065JMG, ENCFF889VIV, ENCFF991ZBF 1407934353 ENCODE Processing Pipeline b65301274dd932324b0f07d86e220e63 https://www.encodeproject.org/files/ENCFF604ZUW/@@download/ENCFF604ZUW.bigWig GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF924OEJ bigBed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF428JCL 13147642 ENCODE Processing Pipeline 18c952ad8e07d27c4f42fb920d58148b https://www.encodeproject.org/files/ENCFF924OEJ/@@download/ENCFF924OEJ.bigBed GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF806ESQ bed narrowPeak conservative idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF428JCL, ENCFF520DDS, ENCFF901VIO 12491 ENCODE Processing Pipeline 71d055ed01082de7e4af5391958029ca https://www.encodeproject.org/files/ENCFF806ESQ/@@download/ENCFF806ESQ.bed.gz GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF926EZW bed narrowPeak optimal idr thresholded peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF428JCL, ENCFF520DDS, ENCFF901VIO 16459 ENCODE Processing Pipeline 83aa6aed62b7bff37777d76faaf7e80a https://www.encodeproject.org/files/ENCFF926EZW/@@download/ENCFF926EZW.bed.gz GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF336GML fastq reads ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 1 ENCFF163KIH 3413138960 Michael Snyder, Stanford 36a463eed43ac37e0696a9144053cba6 SRA:SRR6212616 https://www.encodeproject.org/files/ENCFF336GML/@@download/ENCFF336GML.fastq.gz Illumina HiSeq 4000 /files/ENCFF463LCW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF163KIH fastq reads ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 2 ENCFF336GML 3914238627 Michael Snyder, Stanford b98c901ab6b3b1123f9c2f14df0991d3 SRA:SRR6212616 https://www.encodeproject.org/files/ENCFF163KIH/@@download/ENCFF163KIH.fastq.gz Illumina HiSeq 4000 /files/ENCFF751BIN/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF295HLN bam unfiltered alignments ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF163KIH, ENCFF336GML, ENCFF807MUK 6181950051 ENCODE Processing Pipeline eb3a4131691679672434e25ca02a8d19 https://www.encodeproject.org/files/ENCFF295HLN/@@download/ENCFF295HLN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF799ZUM bam unfiltered alignments ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF163KIH, ENCFF336GML, ENCFF643CGH 6174399918 ENCODE Processing Pipeline 80055757b3e671f49236e27e7801636f https://www.encodeproject.org/files/ENCFF799ZUM/@@download/ENCFF799ZUM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF820VHQ bam alignments ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF163KIH, ENCFF336GML, ENCFF807MUK 3081674956 ENCODE Processing Pipeline 09d6f6b0e95b04a2266c2dd3002e3367 https://www.encodeproject.org/files/ENCFF820VHQ/@@download/ENCFF820VHQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF645GMV bam alignments ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF163KIH, ENCFF336GML, ENCFF643CGH 3085653564 ENCODE Processing Pipeline 0f9bcbb59dd3e14219d32c344cb5495e https://www.encodeproject.org/files/ENCFF645GMV/@@download/ENCFF645GMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF915RIP bigWig signal p-value ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF136UBM, ENCFF820VHQ 989756690 ENCODE Processing Pipeline 4b52742ed762f898e4ed912b5af1b44e https://www.encodeproject.org/files/ENCFF915RIP/@@download/ENCFF915RIP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF551QFV bigWig fold change over control ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF136UBM, ENCFF820VHQ 1133318331 ENCODE Processing Pipeline 348aaac455b4ff4804678f37d5417098 https://www.encodeproject.org/files/ENCFF551QFV/@@download/ENCFF551QFV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF665VIR bed narrowPeak peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF136UBM, ENCFF820VHQ 6470916 ENCODE Processing Pipeline 953a6827396f2a0f851bab75775a42ba https://www.encodeproject.org/files/ENCFF665VIR/@@download/ENCFF665VIR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF956QVQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF665VIR 301801 ENCODE Processing Pipeline 6c4536200397c24bf61ec9edc981999d https://www.encodeproject.org/files/ENCFF956QVQ/@@download/ENCFF956QVQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF890IKP bigBed narrowPeak peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF665VIR 13456815 ENCODE Processing Pipeline 6696e8da66308069ed233662e41f3629 https://www.encodeproject.org/files/ENCFF890IKP/@@download/ENCFF890IKP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF635QKY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF956QVQ 708880 ENCODE Processing Pipeline 92117aef8ce9af2825b5504d4c2fda37 https://www.encodeproject.org/files/ENCFF635QKY/@@download/ENCFF635QKY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF880VJC bigWig signal p-value ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF492TNL, ENCFF645GMV 1056139087 ENCODE Processing Pipeline 027fc8e461cfbef5876ddf334abdbc83 https://www.encodeproject.org/files/ENCFF880VJC/@@download/ENCFF880VJC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF597SVQ bigWig fold change over control ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF492TNL, ENCFF645GMV 1152254976 ENCODE Processing Pipeline b3557859d6d442f8c25694566f5ef9a6 https://www.encodeproject.org/files/ENCFF597SVQ/@@download/ENCFF597SVQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF530FGP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF135CBQ, ENCFF419RSJ 303541 ENCODE Processing Pipeline e4a7530ad07ca5c7a89731537a6480bb https://www.encodeproject.org/files/ENCFF530FGP/@@download/ENCFF530FGP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF135CBQ bed narrowPeak peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF492TNL, ENCFF645GMV 6477548 ENCODE Processing Pipeline 21eb2262903231363b09b5fcc070d987 https://www.encodeproject.org/files/ENCFF135CBQ/@@download/ENCFF135CBQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF135MHZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF530FGP 714888 ENCODE Processing Pipeline a4c2eb5e0383dabb5d1082ca9825275e https://www.encodeproject.org/files/ENCFF135MHZ/@@download/ENCFF135MHZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF151JIU bigBed narrowPeak peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF135CBQ 13477605 ENCODE Processing Pipeline e07b68859e1d1a7994c7a082001aa4f5 https://www.encodeproject.org/files/ENCFF151JIU/@@download/ENCFF151JIU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000WFS bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFQ 1312942 Michael Snyder, Stanford d35d43b7e74c0cfada1367abcc84929f https://www.encodeproject.org/files/ENCFF000WFS/@@download/ENCFF000WFS.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFT bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGC 353383232 Michael Snyder, Stanford eb9bb94825abb7056bf7b4fbf2c41e3c https://www.encodeproject.org/files/ENCFF000WFT/@@download/ENCFF000WFT.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFU bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGB 389409573 Michael Snyder, Stanford 2cf347183509f1fc992eb5244a967a84 https://www.encodeproject.org/files/ENCFF000WFU/@@download/ENCFF000WFU.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFV bigWig signal ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 275074771 Michael Snyder, Stanford 488a3db6090797192909c56ce6d6a38f https://www.encodeproject.org/files/ENCFF000WFV/@@download/ENCFF000WFV.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WGB fastq reads ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 927420117 Michael Snyder, Stanford a880093f71a3f2df43994d2fb8e56d2b https://www.encodeproject.org/files/ENCFF000WGB/@@download/ENCFF000WGB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WGC fastq reads ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 639283255 Michael Snyder, Stanford 1800b38ad67e1c481ee5c0c76d28b8c9 https://www.encodeproject.org/files/ENCFF000WGC/@@download/ENCFF000WGC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VFQ bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 564777 Michael Snyder, Stanford ee698b150407219608fa06fcbc8a5480 https://www.encodeproject.org/files/ENCFF001VFQ/@@download/ENCFF001VFQ.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPT bed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 226110 ENCODE Consortium Analysis Working Group 7f1d056d70a7f7880977c4d9e1d0521e https://www.encodeproject.org/files/ENCFF002CPT/@@download/ENCFF002CPT.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF879EUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPT 587535 ENCODE Consortium afb38b7eb63196e89acf2e169fc593c1 https://www.encodeproject.org/files/ENCFF879EUS/@@download/ENCFF879EUS.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379OHG bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF643CGH 1009792543 ENCODE Processing Pipeline ae091cd67b8631711b2466ad2d735002 https://www.encodeproject.org/files/ENCFF379OHG/@@download/ENCFF379OHG.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF496UYU bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF643CGH 725430239 ENCODE Processing Pipeline 716260b87d7881719986ddc98f25d0d4 https://www.encodeproject.org/files/ENCFF496UYU/@@download/ENCFF496UYU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF341YTC bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF643CGH 443728558 ENCODE Processing Pipeline e14ff5d5f936321c348dc2871a7fa12b https://www.encodeproject.org/files/ENCFF341YTC/@@download/ENCFF341YTC.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713SUL bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF643CGH 608228873 ENCODE Processing Pipeline fcc15f81d8f368767b7ae2f1fe731313 https://www.encodeproject.org/files/ENCFF713SUL/@@download/ENCFF713SUL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF854MYU bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF807MUK 722938861 ENCODE Processing Pipeline b6d56980e2903dea91fde81b1f19b7e3 https://www.encodeproject.org/files/ENCFF854MYU/@@download/ENCFF854MYU.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848OVF bam unfiltered alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF807MUK 1005766499 ENCODE Processing Pipeline 2c60a3b3b7752e989a0907739d57bf98 https://www.encodeproject.org/files/ENCFF848OVF/@@download/ENCFF848OVF.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF270QLE bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF807MUK 608017062 ENCODE Processing Pipeline 9c8c2ca9db9aca016e9ad628d0dc4f32 https://www.encodeproject.org/files/ENCFF270QLE/@@download/ENCFF270QLE.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF078MCO bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF807MUK 443226439 ENCODE Processing Pipeline bd85f3c6f86f8dc1636864c4231b5d18 https://www.encodeproject.org/files/ENCFF078MCO/@@download/ENCFF078MCO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF346HJU bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 169338027 ENCODE Processing Pipeline 63329b65ecec9cacd276be21759bd4fd https://www.encodeproject.org/files/ENCFF346HJU/@@download/ENCFF346HJU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF707LQO bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 169354703 ENCODE Processing Pipeline ea218060af65b08c589be01250476094 https://www.encodeproject.org/files/ENCFF707LQO/@@download/ENCFF707LQO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF092ZPG bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 240257044 ENCODE Processing Pipeline 76a886d824c1a9a55cfada05b8c63175 https://www.encodeproject.org/files/ENCFF092ZPG/@@download/ENCFF092ZPG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF013UKD bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 78483566 ENCODE Processing Pipeline 8d8e318a95d497e62bce98572585640e https://www.encodeproject.org/files/ENCFF013UKD/@@download/ENCFF013UKD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF512MJA bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 241041300 ENCODE Processing Pipeline 078d4391618fbd0e3f15d8d515148565 https://www.encodeproject.org/files/ENCFF512MJA/@@download/ENCFF512MJA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF466BAG bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023RDZ 7353513 ENCODE Processing Pipeline a230801d152aed5abb91e21d80b284df https://www.encodeproject.org/files/ENCFF466BAG/@@download/ENCFF466BAG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF372DRC bed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF023RDZ, ENCFF485PHV, ENCFF548FHH 139589 ENCODE Processing Pipeline c0e28ff4091658d0e94ba0a69b97e145 https://www.encodeproject.org/files/ENCFF372DRC/@@download/ENCFF372DRC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF574JPD bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 4013610 ENCODE Processing Pipeline e2f44b0d5fe916853a043d4ba58874ea https://www.encodeproject.org/files/ENCFF574JPD/@@download/ENCFF574JPD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF524IZA bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF341YTC, ENCFF477ZKJ 3609934 ENCODE Processing Pipeline 968cfadd5399a493b1aacf3e6ea5576e https://www.encodeproject.org/files/ENCFF524IZA/@@download/ENCFF524IZA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF103KIV bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078MCO, ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 176278031 ENCODE Processing Pipeline da6a0af2d788e902c7c772a511ce5fd0 https://www.encodeproject.org/files/ENCFF103KIV/@@download/ENCFF103KIV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF722ZEV bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF341YTC, ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 4469302 ENCODE Processing Pipeline de714876c528de28d4f8b66400e29f5e https://www.encodeproject.org/files/ENCFF722ZEV/@@download/ENCFF722ZEV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF136TKS bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF341YTC, ENCFF477ZKJ 78308735 ENCODE Processing Pipeline 19bec4db6577c4283a3030d545190501 https://www.encodeproject.org/files/ENCFF136TKS/@@download/ENCFF136TKS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF830RBU bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078MCO, ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 397208079 ENCODE Processing Pipeline 990d266d669b5f17947655833aca5131 https://www.encodeproject.org/files/ENCFF830RBU/@@download/ENCFF830RBU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF619KFP bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF341YTC, ENCFF477ZKJ 169570535 ENCODE Processing Pipeline ff6ebd3d3802de87b54cbf359b5056c0 https://www.encodeproject.org/files/ENCFF619KFP/@@download/ENCFF619KFP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF123SXV bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF485PHV 9947380 ENCODE Processing Pipeline 97014b1495540c70742850ef59e5612c https://www.encodeproject.org/files/ENCFF123SXV/@@download/ENCFF123SXV.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF722VEM bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548FHH 10672728 ENCODE Processing Pipeline 797ee3efc3248cd1a7e257a1f5fd9975 https://www.encodeproject.org/files/ENCFF722VEM/@@download/ENCFF722VEM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF109ZHE bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF341YTC, ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 406672246 ENCODE Processing Pipeline 89f75e0326090408d0605de652463e18 https://www.encodeproject.org/files/ENCFF109ZHE/@@download/ENCFF109ZHE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF867VZN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF372DRC 321242 ENCODE Processing Pipeline c9a909ca97a28e8169aba94f29644f1a https://www.encodeproject.org/files/ENCFF867VZN/@@download/ENCFF867VZN.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF009EEI bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF574JPD 9947352 ENCODE Processing Pipeline 0c204536389b65bfde21ab2d9869671e https://www.encodeproject.org/files/ENCFF009EEI/@@download/ENCFF009EEI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF797TWM bigWig signal p-value ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF341YTC, ENCFF477ZKJ, ENCFF710SMS, ENCFF713SUL 176598621 ENCODE Processing Pipeline ddd2d3452086ce84fadc72b240640dd1 https://www.encodeproject.org/files/ENCFF797TWM/@@download/ENCFF797TWM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF485PHV bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 4013789 ENCODE Processing Pipeline c37fe4f4f26f43a140fc952141d07512 https://www.encodeproject.org/files/ENCFF485PHV/@@download/ENCFF485PHV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF023RDZ bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 3606433 ENCODE Processing Pipeline d4414b68ef54e6ffdfa4e70ddf3c888f https://www.encodeproject.org/files/ENCFF023RDZ/@@download/ENCFF023RDZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548FHH bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078MCO, ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 4467033 ENCODE Processing Pipeline d6a627cc65d924f2bb01da5c38b46535 https://www.encodeproject.org/files/ENCFF548FHH/@@download/ENCFF548FHH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF924YCU bigWig fold change over control ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 169906548 ENCODE Processing Pipeline 8b80599dca1b4776cbe3ab046d0217a8 https://www.encodeproject.org/files/ENCFF924YCU/@@download/ENCFF924YCU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF970CZH bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF524IZA 7353122 ENCODE Processing Pipeline 00e746742141dde4e2dde3b432930b7e https://www.encodeproject.org/files/ENCFF970CZH/@@download/ENCFF970CZH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514SWA bed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF524IZA, ENCFF574JPD, ENCFF722ZEV 141802 ENCODE Processing Pipeline 91ba3493788101a1e408a079c1820399 https://www.encodeproject.org/files/ENCFF514SWA/@@download/ENCFF514SWA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF657DWO bigBed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF722ZEV 10675432 ENCODE Processing Pipeline efb16ba2f0ad555a656e6cb33f4cd475 https://www.encodeproject.org/files/ENCFF657DWO/@@download/ENCFF657DWO.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF202CTX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF514SWA 324566 ENCODE Processing Pipeline b2f67109b77da46dfd41fba3b359e057 https://www.encodeproject.org/files/ENCFF202CTX/@@download/ENCFF202CTX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF636DBM fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 1 ENCFF803PGO 4464399940 Michael Snyder, Stanford 07381f30febeb97ce1848901978a85ac https://www.encodeproject.org/files/ENCFF636DBM/@@download/ENCFF636DBM.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF812RLF fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 1 ENCFF599YET 3212323284 Michael Snyder, Stanford 4a28589057f528b262c9ec00f3af7453 https://www.encodeproject.org/files/ENCFF812RLF/@@download/ENCFF812RLF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF803PGO fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 1 100 paired-ended 2 ENCFF636DBM 5023430013 Michael Snyder, Stanford 371976c4e4d78f95214f537056c0eac4 https://www.encodeproject.org/files/ENCFF803PGO/@@download/ENCFF803PGO.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF599YET fastq reads ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 1 100 paired-ended 2 ENCFF812RLF 3587899556 Michael Snyder, Stanford 34be5a5579254114510e401f602efe30 https://www.encodeproject.org/files/ENCFF599YET/@@download/ENCFF599YET.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF162ZVX bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF807MUK, ENCFF812RLF 5601027470 ENCODE Processing Pipeline 50b2e9719bdcb05b914b0f28f938ee13 https://www.encodeproject.org/files/ENCFF162ZVX/@@download/ENCFF162ZVX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF780VWO bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF807MUK, ENCFF812RLF 2290410797 ENCODE Processing Pipeline 6977d9734da67ecdad52ddb133dccb5a https://www.encodeproject.org/files/ENCFF780VWO/@@download/ENCFF780VWO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF723OJK bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF803PGO, ENCFF807MUK 8886326052 ENCODE Processing Pipeline d69ce1466aa8c7b3483659da3a82e92b https://www.encodeproject.org/files/ENCFF723OJK/@@download/ENCFF723OJK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF579YLW bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF803PGO, ENCFF807MUK 5148340015 ENCODE Processing Pipeline 4a885a41f1438019504d6c8444d1d962 https://www.encodeproject.org/files/ENCFF579YLW/@@download/ENCFF579YLW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF743PUC bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF643CGH, ENCFF812RLF 5597221131 ENCODE Processing Pipeline 7bb3b4399a84a4d52acf3829718e178b https://www.encodeproject.org/files/ENCFF743PUC/@@download/ENCFF743PUC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF636WIZ bam unfiltered alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF643CGH, ENCFF803PGO 8879085590 ENCODE Processing Pipeline cec05c9313540cb81b319ea44b10bb69 https://www.encodeproject.org/files/ENCFF636WIZ/@@download/ENCFF636WIZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF081WNV bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF643CGH, ENCFF812RLF 2293903468 ENCODE Processing Pipeline e9ea0f6bad3bc8e7e248486a5bfdb3cd https://www.encodeproject.org/files/ENCFF081WNV/@@download/ENCFF081WNV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF504YJU bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF643CGH, ENCFF803PGO 5185616138 ENCODE Processing Pipeline 9d272b76fc7aa4d5f4bd200c500eb61f https://www.encodeproject.org/files/ENCFF504YJU/@@download/ENCFF504YJU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF304DYC bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 1644312406 ENCODE Processing Pipeline 7b8683ab0774e94113a9769c8b0fb78f https://www.encodeproject.org/files/ENCFF304DYC/@@download/ENCFF304DYC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF961ERY bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF081WNV, ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 1950147714 ENCODE Processing Pipeline f484e635aec7f5df26fb02ca4eb20c9e https://www.encodeproject.org/files/ENCFF961ERY/@@download/ENCFF961ERY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF863OML bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF081WNV, ENCFF666ATR 919370841 ENCODE Processing Pipeline 130e8581db9e36bbc8191ab601f305b8 https://www.encodeproject.org/files/ENCFF863OML/@@download/ENCFF863OML.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF725JGL bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF081WNV, ENCFF666ATR 978295363 ENCODE Processing Pipeline 2ac6fe771deb239b92068f6b42a7947a https://www.encodeproject.org/files/ENCFF725JGL/@@download/ENCFF725JGL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF638TZI bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 1920692914 ENCODE Processing Pipeline 27a24beb839be28003a9a9297805f141 https://www.encodeproject.org/files/ENCFF638TZI/@@download/ENCFF638TZI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF472KMT bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF081WNV, ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 2202117925 ENCODE Processing Pipeline 9d2380f0cbb3d52deed64c7817f20812 https://www.encodeproject.org/files/ENCFF472KMT/@@download/ENCFF472KMT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF814UGN bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF081WNV, ENCFF666ATR 6103014 ENCODE Processing Pipeline 4fca2e74f5f2b499a66b0f50def774fa https://www.encodeproject.org/files/ENCFF814UGN/@@download/ENCFF814UGN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF295RVX bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 6805560 ENCODE Processing Pipeline 1f45954b30c3dcf38f854dabe916518a https://www.encodeproject.org/files/ENCFF295RVX/@@download/ENCFF295RVX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF363JPA bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF081WNV, ENCFF322NTO, ENCFF504YJU, ENCFF666ATR 7116428 ENCODE Processing Pipeline 47af6e22ae882a3847927510426a252c https://www.encodeproject.org/files/ENCFF363JPA/@@download/ENCFF363JPA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF356GGL bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF295RVX 11339384 ENCODE Processing Pipeline c3f7d4421f38d41812331a3b15d85f20 https://www.encodeproject.org/files/ENCFF356GGL/@@download/ENCFF356GGL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF005MNG bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF814UGN 11431196 ENCODE Processing Pipeline 6bbc4779f4b7c3bd8ed7c7ca085f32f4 https://www.encodeproject.org/files/ENCFF005MNG/@@download/ENCFF005MNG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF658GXY bigBed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF409WNF 564900 ENCODE Processing Pipeline 7dcdd5e72f317892f3f3d4fa8ff411b7 https://www.encodeproject.org/files/ENCFF658GXY/@@download/ENCFF658GXY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF409WNF bed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF295RVX, ENCFF363JPA, ENCFF419RSJ, ENCFF814UGN 257014 ENCODE Processing Pipeline f8b28e363f6c65fbafd75c66cd6dcbe2 https://www.encodeproject.org/files/ENCFF409WNF/@@download/ENCFF409WNF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF210HTZ bed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF295RVX, ENCFF363JPA, ENCFF419RSJ, ENCFF814UGN 351015 ENCODE Processing Pipeline e968bffb94c4efde18b64576f2b94638 https://www.encodeproject.org/files/ENCFF210HTZ/@@download/ENCFF210HTZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF040HBF bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF363JPA 11350583 ENCODE Processing Pipeline 9ef3ba76fa9ce7856d61ebc28183f308 https://www.encodeproject.org/files/ENCFF040HBF/@@download/ENCFF040HBF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF199OKG bigBed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF210HTZ 688636 ENCODE Processing Pipeline beb3d9d8d27d9787524598086b91af68 https://www.encodeproject.org/files/ENCFF199OKG/@@download/ENCFF199OKG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF870WRG bigBed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF127GYQ 690815 ENCODE Processing Pipeline c752b19b70590f8e9b8a941b26ffe41e https://www.encodeproject.org/files/ENCFF870WRG/@@download/ENCFF870WRG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF635PUG bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 1919231652 ENCODE Processing Pipeline bab3035d46953bff8d3ce6c62c1e4ac2 https://www.encodeproject.org/files/ENCFF635PUG/@@download/ENCFF635PUG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF618BFX bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF579YLW, ENCFF592WAL, ENCFF780VWO, ENCFF901CND 2183421587 ENCODE Processing Pipeline e7f75ca155ba2d138b45bf648f9410dc https://www.encodeproject.org/files/ENCFF618BFX/@@download/ENCFF618BFX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF412PRK bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF147CFU 11382640 ENCODE Processing Pipeline e7dfe7f96f441d873b91d57b2fbdec61 https://www.encodeproject.org/files/ENCFF412PRK/@@download/ENCFF412PRK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF988AHE bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 1754538655 ENCODE Processing Pipeline 4136e7242a0770d44d53a8629019725a https://www.encodeproject.org/files/ENCFF988AHE/@@download/ENCFF988AHE.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF966ALZ bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 1011842435 ENCODE Processing Pipeline f6a28a7ee78a219c3682c6fd7eafb922 https://www.encodeproject.org/files/ENCFF966ALZ/@@download/ENCFF966ALZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF814HVN bigWig signal p-value ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF579YLW, ENCFF592WAL, ENCFF780VWO, ENCFF901CND 2152358080 ENCODE Processing Pipeline c9f93f60d11cdd0dafd2da0408786005 https://www.encodeproject.org/files/ENCFF814HVN/@@download/ENCFF814HVN.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF329HGR bigWig fold change over control ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 963554749 ENCODE Processing Pipeline ee3363216b99859d5b9c306eeae4d76b https://www.encodeproject.org/files/ENCFF329HGR/@@download/ENCFF329HGR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF869LKG bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 6770534 ENCODE Processing Pipeline d2fee1cbbf013603b8adb506173ad86b https://www.encodeproject.org/files/ENCFF869LKG/@@download/ENCFF869LKG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF147CFU bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 6073498 ENCODE Processing Pipeline f119ed6bcc4288b8a62e142d50dcf2cc https://www.encodeproject.org/files/ENCFF147CFU/@@download/ENCFF147CFU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF301WWU bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF579YLW, ENCFF592WAL, ENCFF780VWO, ENCFF901CND 7098166 ENCODE Processing Pipeline c3c5a6441b6ee560e66da67fd6d5d61f https://www.encodeproject.org/files/ENCFF301WWU/@@download/ENCFF301WWU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF056WXO bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF869LKG 11313452 ENCODE Processing Pipeline 6842b52ffadcf71fd49b1869ee39a66a https://www.encodeproject.org/files/ENCFF056WXO/@@download/ENCFF056WXO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF527UYY bigBed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF301WWU 11332368 ENCODE Processing Pipeline 4a388d4996cf5301016f24d9aa405e8c https://www.encodeproject.org/files/ENCFF527UYY/@@download/ENCFF527UYY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF049KAI bed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF147CFU, ENCFF301WWU, ENCFF869LKG 252186 ENCODE Processing Pipeline 9acddcebe216bfc7637f18a09c2f0c43 https://www.encodeproject.org/files/ENCFF049KAI/@@download/ENCFF049KAI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF776TIB bigBed narrowPeak conservative idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF049KAI 439153 ENCODE Processing Pipeline c72355aea20065b3d6ae89e4b809fab2 https://www.encodeproject.org/files/ENCFF776TIB/@@download/ENCFF776TIB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF127GYQ bed narrowPeak optimal idr thresholded peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1, 2 ENCFF001TDO, ENCFF147CFU, ENCFF301WWU, ENCFF869LKG 340897 ENCODE Processing Pipeline 0ac1a8c909c53b83c0eab8dd64d2ff69 https://www.encodeproject.org/files/ENCFF127GYQ/@@download/ENCFF127GYQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF149OFF fastq reads ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 2 ENCFF199RYE 4076209795 Michael Snyder, Stanford 58b1cd81a72f6bac0cad9f4bd201a8ff https://www.encodeproject.org/files/ENCFF149OFF/@@download/ENCFF149OFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released experiment not submitted to GEO ENCFF199RYE fastq reads ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 1 ENCFF149OFF 3992810224 Michael Snyder, Stanford 0657c93a4a5e7e11bdcaa0676685f23b https://www.encodeproject.org/files/ENCFF199RYE/@@download/ENCFF199RYE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released experiment not submitted to GEO ENCFF239CYG bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF149OFF, ENCFF199RYE, ENCFF807MUK 6937084760 ENCODE Processing Pipeline bd69446d9bfdfae2325fbc11b867bc58 https://www.encodeproject.org/files/ENCFF239CYG/@@download/ENCFF239CYG.bam hg19 released experiment not submitted to GEO ENCFF752JVQ bam unfiltered alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF149OFF, ENCFF199RYE, ENCFF807MUK 8630140230 ENCODE Processing Pipeline 13ece79e5e85a90403591b833fa65d7c https://www.encodeproject.org/files/ENCFF752JVQ/@@download/ENCFF752JVQ.bam hg19 released experiment not submitted to GEO ENCFF319GEZ bam unfiltered alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF149OFF, ENCFF199RYE, ENCFF643CGH 8642088473 ENCODE Processing Pipeline d206098b069efb8dc55f27c7f58448fd https://www.encodeproject.org/files/ENCFF319GEZ/@@download/ENCFF319GEZ.bam GRCh38 released experiment not submitted to GEO ENCFF011HOS bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF149OFF, ENCFF199RYE, ENCFF643CGH 6971221190 ENCODE Processing Pipeline b4227754e5841cb3fab078fc2f2e7a27 https://www.encodeproject.org/files/ENCFF011HOS/@@download/ENCFF011HOS.bam GRCh38 released experiment not submitted to GEO ENCFF724TAT bigWig signal p-value ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF011HOS, ENCFF190EPQ, ENCFF950AXC 1797301147 ENCODE Processing Pipeline 132b230c3c32de4b7b5353b2e6b68530 https://www.encodeproject.org/files/ENCFF724TAT/@@download/ENCFF724TAT.bigWig GRCh38 released experiment not submitted to GEO ENCFF600AOU bigWig fold change over control ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF011HOS, ENCFF190EPQ, ENCFF950AXC 1769401229 ENCODE Processing Pipeline 745970abd488503fc0a851f93d11235f https://www.encodeproject.org/files/ENCFF600AOU/@@download/ENCFF600AOU.bigWig GRCh38 released experiment not submitted to GEO ENCFF511CNY fastq reads ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF384KWM 3300288149 Michael Snyder, Stanford 9810e75f706180e2fc3a09dae6d9ad35 https://www.encodeproject.org/files/ENCFF511CNY/@@download/ENCFF511CNY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released experiment not submitted to GEO ENCFF384KWM fastq reads ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF511CNY 3297011553 Michael Snyder, Stanford f0aab2073b365e8dbe18e31292180ed6 https://www.encodeproject.org/files/ENCFF384KWM/@@download/ENCFF384KWM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released experiment not submitted to GEO ENCFF062EUT bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF384KWM, ENCFF511CNY, ENCFF807MUK 5348612116 ENCODE Processing Pipeline ea25c0a6e21d7efc45e6fc460e8de6fc https://www.encodeproject.org/files/ENCFF062EUT/@@download/ENCFF062EUT.bam hg19 released experiment not submitted to GEO ENCFF124LWU bam unfiltered alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF384KWM, ENCFF511CNY, ENCFF807MUK 6375163883 ENCODE Processing Pipeline 5861bc54b9d87fe555d8c0a96e3444b5 https://www.encodeproject.org/files/ENCFF124LWU/@@download/ENCFF124LWU.bam hg19 released experiment not submitted to GEO ENCFF320SCI bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF384KWM, ENCFF511CNY, ENCFF643CGH 5360941704 ENCODE Processing Pipeline 038fb6250f7b9ddd4cb16f37e4e5571c https://www.encodeproject.org/files/ENCFF320SCI/@@download/ENCFF320SCI.bam GRCh38 released experiment not submitted to GEO ENCFF267XER bam unfiltered alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF384KWM, ENCFF511CNY, ENCFF643CGH 6381026439 ENCODE Processing Pipeline 585a6f286a42987b1c8b62e7204b23e8 https://www.encodeproject.org/files/ENCFF267XER/@@download/ENCFF267XER.bam GRCh38 released experiment not submitted to GEO ENCFF853TTW bigWig fold change over control ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF011HOS, ENCFF190EPQ, ENCFF320SCI, ENCFF950AXC 2306227563 ENCODE Processing Pipeline 6322e8ed841e3828f4b223fbbdd608bd https://www.encodeproject.org/files/ENCFF853TTW/@@download/ENCFF853TTW.bigWig GRCh38 released experiment not submitted to GEO ENCFF826PKU bigBed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF304FKQ 11480871 ENCODE Processing Pipeline def630f2d4f4ebaad9a937ba933caecc https://www.encodeproject.org/files/ENCFF826PKU/@@download/ENCFF826PKU.bigBed GRCh38 released experiment not submitted to GEO ENCFF642YGX bigBed narrowPeak optimal idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF550TXR 1305651 ENCODE Processing Pipeline b41685d8fd9f2f471b884311af8dc1da https://www.encodeproject.org/files/ENCFF642YGX/@@download/ENCFF642YGX.bigBed GRCh38 released experiment not submitted to GEO ENCFF751SAZ bigWig signal p-value ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF062EUT, ENCFF449NNE 1312490390 ENCODE Processing Pipeline 6498cef77c5cfe55b80899998bf4a835 https://www.encodeproject.org/files/ENCFF751SAZ/@@download/ENCFF751SAZ.bigWig hg19 released experiment not submitted to GEO ENCFF732KKY bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 6959076 ENCODE Processing Pipeline 33b9d759adc2fda406dd8706c23499f5 https://www.encodeproject.org/files/ENCFF732KKY/@@download/ENCFF732KKY.bed.gz hg19 released experiment not submitted to GEO ENCFF130QTI bigBed narrowPeak conservative idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF835UPN 1062271 ENCODE Processing Pipeline 3f4449de873105ebb5bc71fb1ca8b765 https://www.encodeproject.org/files/ENCFF130QTI/@@download/ENCFF130QTI.bigBed hg19 released experiment not submitted to GEO ENCFF759XLA bigBed narrowPeak optimal idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF161PGD 1271950 ENCODE Processing Pipeline f7c007ce5114053a53cc70f0bf447466 https://www.encodeproject.org/files/ENCFF759XLA/@@download/ENCFF759XLA.bigBed hg19 released experiment not submitted to GEO ENCFF414DXJ bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF011HOS, ENCFF190EPQ, ENCFF320SCI, ENCFF950AXC 7144818 ENCODE Processing Pipeline e480e91417853bff750c38fffe4d4095 https://www.encodeproject.org/files/ENCFF414DXJ/@@download/ENCFF414DXJ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF740YDK bigWig signal p-value ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 1526221132 ENCODE Processing Pipeline e77b3771a1b69164dcae9ed5d25d2fa1 https://www.encodeproject.org/files/ENCFF740YDK/@@download/ENCFF740YDK.bigWig hg19 released experiment not submitted to GEO ENCFF727DNJ bigWig signal p-value ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF062EUT, ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 1998045337 ENCODE Processing Pipeline 7c7de18acafb72d20b6db023a146f202 https://www.encodeproject.org/files/ENCFF727DNJ/@@download/ENCFF727DNJ.bigWig hg19 released experiment not submitted to GEO ENCFF239JWR bigWig fold change over control ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF062EUT, ENCFF449NNE 1311228864 ENCODE Processing Pipeline adf52d8f489b9616d8fd8bb08b4400ae https://www.encodeproject.org/files/ENCFF239JWR/@@download/ENCFF239JWR.bigWig hg19 released experiment not submitted to GEO ENCFF835UPN bed narrowPeak conservative idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF365ROK, ENCFF708DXF, ENCFF732KKY 593044 ENCODE Processing Pipeline 24973b04e5daba184843dbcffc61d9a3 https://www.encodeproject.org/files/ENCFF835UPN/@@download/ENCFF835UPN.bed.gz hg19 released experiment not submitted to GEO ENCFF261UKU bigWig signal p-value ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF190EPQ, ENCFF320SCI 1289806790 ENCODE Processing Pipeline fec7cf3482acb2b363d9f3691e34c8b1 https://www.encodeproject.org/files/ENCFF261UKU/@@download/ENCFF261UKU.bigWig GRCh38 released experiment not submitted to GEO ENCFF304FKQ bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF011HOS, ENCFF190EPQ, ENCFF950AXC 6962480 ENCODE Processing Pipeline 8298dd330ebe3349c25c8bf501c7b9b7 https://www.encodeproject.org/files/ENCFF304FKQ/@@download/ENCFF304FKQ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF228LSW bed narrowPeak conservative idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF304FKQ, ENCFF414DXJ, ENCFF419RSJ, ENCFF644LDW 605763 ENCODE Processing Pipeline 5155c3c5526a825ffb12541a84254d51 https://www.encodeproject.org/files/ENCFF228LSW/@@download/ENCFF228LSW.bed.gz GRCh38 released experiment not submitted to GEO ENCFF708DXF bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF062EUT, ENCFF449NNE 6584759 ENCODE Processing Pipeline ef07b9ba5b5fb6297e698ee13a4d011a https://www.encodeproject.org/files/ENCFF708DXF/@@download/ENCFF708DXF.bed.gz hg19 released experiment not submitted to GEO ENCFF223OPP bigBed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF708DXF 11611302 ENCODE Processing Pipeline 9dc12b12232fb4bd3e0d2752d3698d1f https://www.encodeproject.org/files/ENCFF223OPP/@@download/ENCFF223OPP.bigBed hg19 released experiment not submitted to GEO ENCFF161PGD bed narrowPeak optimal idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF365ROK, ENCFF708DXF, ENCFF732KKY 753611 ENCODE Processing Pipeline 8cffc6ccd34129dc10ef7665da0c304d https://www.encodeproject.org/files/ENCFF161PGD/@@download/ENCFF161PGD.bed.gz hg19 released experiment not submitted to GEO ENCFF829GZL bigWig signal p-value ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF011HOS, ENCFF190EPQ, ENCFF320SCI, ENCFF950AXC 1785364718 ENCODE Processing Pipeline 6d0e487442fd2e95391613fd7a711df8 https://www.encodeproject.org/files/ENCFF829GZL/@@download/ENCFF829GZL.bigWig GRCh38 released experiment not submitted to GEO ENCFF632NSS bigWig fold change over control ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF190EPQ, ENCFF320SCI 1303653714 ENCODE Processing Pipeline c276bdb54aad27137af8caf3e45f8f03 https://www.encodeproject.org/files/ENCFF632NSS/@@download/ENCFF632NSS.bigWig GRCh38 released experiment not submitted to GEO ENCFF644LDW bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF190EPQ, ENCFF320SCI 6592974 ENCODE Processing Pipeline 624f8836393f9c0c8079607b04a3c6f4 https://www.encodeproject.org/files/ENCFF644LDW/@@download/ENCFF644LDW.bed.gz GRCh38 released experiment not submitted to GEO ENCFF349LDQ bigBed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 ENCFF644LDW 11627330 ENCODE Processing Pipeline 027a6163b7e8a059ddeeb89d04f62ba7 https://www.encodeproject.org/files/ENCFF349LDQ/@@download/ENCFF349LDQ.bigBed GRCh38 released experiment not submitted to GEO ENCFF350CSQ bigBed narrowPeak conservative idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF228LSW 1085989 ENCODE Processing Pipeline 0af946fe27b1638109833322d23ac894 https://www.encodeproject.org/files/ENCFF350CSQ/@@download/ENCFF350CSQ.bigBed GRCh38 released experiment not submitted to GEO ENCFF365ROK bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF062EUT, ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 7131044 ENCODE Processing Pipeline e3e501b926a59e052e97ff847f8c73e4 https://www.encodeproject.org/files/ENCFF365ROK/@@download/ENCFF365ROK.bed.gz hg19 released experiment not submitted to GEO ENCFF907ARJ bigBed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF414DXJ 11606203 ENCODE Processing Pipeline 5366fc0161bdb4417aed3e7c437707a6 https://www.encodeproject.org/files/ENCFF907ARJ/@@download/ENCFF907ARJ.bigBed GRCh38 released experiment not submitted to GEO ENCFF550TXR bed narrowPeak optimal idr thresholded peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF304FKQ, ENCFF414DXJ, ENCFF419RSJ, ENCFF644LDW 773773 ENCODE Processing Pipeline aeefe9912f80c85e6f307858c01f0262 https://www.encodeproject.org/files/ENCFF550TXR/@@download/ENCFF550TXR.bed.gz GRCh38 released experiment not submitted to GEO ENCFF249YKO bigWig fold change over control ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 1772197856 ENCODE Processing Pipeline 065dba80814681ef97031c9f52fcba94 https://www.encodeproject.org/files/ENCFF249YKO/@@download/ENCFF249YKO.bigWig hg19 released experiment not submitted to GEO ENCFF408ICU bigWig fold change over control ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF062EUT, ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 2300339382 ENCODE Processing Pipeline 0429c25dc83def11fd287d98ee3d6eab https://www.encodeproject.org/files/ENCFF408ICU/@@download/ENCFF408ICU.bigWig hg19 released experiment not submitted to GEO ENCFF245XUI bigBed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF732KKY 11475853 ENCODE Processing Pipeline 86ecca8477863245010cb75faa629164 https://www.encodeproject.org/files/ENCFF245XUI/@@download/ENCFF245XUI.bigBed hg19 released experiment not submitted to GEO ENCFF624QRH bigBed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF365ROK 11577734 ENCODE Processing Pipeline 90e7c3da3afd65df2f4b718da59f7b82 https://www.encodeproject.org/files/ENCFF624QRH/@@download/ENCFF624QRH.bigBed hg19 released experiment not submitted to GEO ENCFF837GHV fastq reads ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 1 76 paired-ended 1 ENCFF304ODL 1520907579 Bradley Bernstein, Broad b09b07639e2af855730e38a868a0b2aa https://www.encodeproject.org/files/ENCFF837GHV/@@download/ENCFF837GHV.fastq.gz Illumina HiSeq 2500 /files/ENCFF267XUN/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF304ODL fastq reads ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 1 76 paired-ended 2 ENCFF837GHV 1551984677 Bradley Bernstein, Broad 07fa67df7959e6abdd976d8b732db7eb https://www.encodeproject.org/files/ENCFF304ODL/@@download/ENCFF304ODL.fastq.gz Illumina HiSeq 2500 /files/ENCFF273UTA/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF895BST bam unfiltered alignments ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 76 ENCFF304ODL, ENCFF643CGH, ENCFF837GHV 3754943877 ENCODE Processing Pipeline 98dc47ca555f16c0caf718e591fbb1db https://www.encodeproject.org/files/ENCFF895BST/@@download/ENCFF895BST.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF037NOK bam alignments ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 76 ENCFF304ODL, ENCFF643CGH, ENCFF837GHV 2719837663 ENCODE Processing Pipeline 7bb1490a224c975bb04a459de7a9f629 https://www.encodeproject.org/files/ENCFF037NOK/@@download/ENCFF037NOK.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF277RFC bam unfiltered alignments ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 76 ENCFF304ODL, ENCFF807MUK, ENCFF837GHV 3745731841 ENCODE Processing Pipeline 3ce21189cf1d182055c1a7b821f0ca2b https://www.encodeproject.org/files/ENCFF277RFC/@@download/ENCFF277RFC.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF139WHV bam alignments ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 76 ENCFF304ODL, ENCFF807MUK, ENCFF837GHV 2718898897 ENCODE Processing Pipeline 898f369971af9af4bff9ab82c747b01c https://www.encodeproject.org/files/ENCFF139WHV/@@download/ENCFF139WHV.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF891UNY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF001TDO, ENCFF516NKL 341590 ENCODE Processing Pipeline bf832eeac2f7c6fc513f5839bb965929 https://www.encodeproject.org/files/ENCFF891UNY/@@download/ENCFF891UNY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF995KQA bigWig signal p-value ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF139WHV, ENCFF269ZDG 1197780854 ENCODE Processing Pipeline 99a7ddbfb6ea074a63b5fd7b79352fed https://www.encodeproject.org/files/ENCFF995KQA/@@download/ENCFF995KQA.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF225HQL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF097WNJ 673044 ENCODE Processing Pipeline 1e17b168e8e87b324ab6ba53ac640703 https://www.encodeproject.org/files/ENCFF225HQL/@@download/ENCFF225HQL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF289DYE bigBed narrowPeak peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF516NKL 13189188 ENCODE Processing Pipeline c6d1fa545a6d0f58dea05d8d4140b523 https://www.encodeproject.org/files/ENCFF289DYE/@@download/ENCFF289DYE.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF238DXG bigWig signal p-value ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF037NOK, ENCFF754UFV 1229123440 ENCODE Processing Pipeline 6b357d197ffeb1b02a6bcc8e90c1b414 https://www.encodeproject.org/files/ENCFF238DXG/@@download/ENCFF238DXG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF934BDF bed narrowPeak peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF037NOK, ENCFF754UFV 6366982 ENCODE Processing Pipeline 3a6b45fab878eaccddd5a3923b84d023 https://www.encodeproject.org/files/ENCFF934BDF/@@download/ENCFF934BDF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF677SMD bigWig fold change over control ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF139WHV, ENCFF269ZDG 1122244794 ENCODE Processing Pipeline a85af27a6e47030be20d716f53718669 https://www.encodeproject.org/files/ENCFF677SMD/@@download/ENCFF677SMD.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF516NKL bed narrowPeak peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF139WHV, ENCFF269ZDG 6366413 ENCODE Processing Pipeline cd140be4cfe587fa8e7727b2881e4da8 https://www.encodeproject.org/files/ENCFF516NKL/@@download/ENCFF516NKL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF434KDM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF891UNY 662870 ENCODE Processing Pipeline 1fc93345a87c984c8969aca1d900a2b6 https://www.encodeproject.org/files/ENCFF434KDM/@@download/ENCFF434KDM.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF162UNP bigWig fold change over control ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF037NOK, ENCFF754UFV 1123903950 ENCODE Processing Pipeline ba820fda452e71d4541e903f1b941d48 https://www.encodeproject.org/files/ENCFF162UNP/@@download/ENCFF162UNP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF204PPN bigBed narrowPeak peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF934BDF 13205433 ENCODE Processing Pipeline bad0e82b240681b6c26da1a1c171ed7e https://www.encodeproject.org/files/ENCFF204PPN/@@download/ENCFF204PPN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF097WNJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF419RSJ, ENCFF934BDF 346958 ENCODE Processing Pipeline 4fe130a9cd7221bd516bbbde1e9e2f5d https://www.encodeproject.org/files/ENCFF097WNJ/@@download/ENCFF097WNJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF000WGF bigBed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFR 102829 Peggy Farnham, USC 5d0d673f385dbbde47d8f7036ef5b99f https://www.encodeproject.org/files/ENCFF000WGF/@@download/ENCFF000WGF.bigBed hg19 archived control insufficient read depth, insufficient read depth, insufficient read length ENCFF000WGG bigWig signal ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 293747184 Peggy Farnham, USC 70f6e740dad969d2317cd5833aa7a170 https://www.encodeproject.org/files/ENCFF000WGG/@@download/ENCFF000WGG.bigWig hg19 archived missing derived_from control insufficient read depth, insufficient read depth, insufficient read length ENCFF000WGH bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGS 948311619 Peggy Farnham, USC 0598bca3cebdea8c2a2c2216a5a1844a https://www.encodeproject.org/files/ENCFF000WGH/@@download/ENCFF000WGH.bam hg19 archived control insufficient read depth, insufficient read depth, insufficient read length ENCFF000WGI bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGT 755522287 Peggy Farnham, USC 68b9eeff1db0e056820ef747b7daa3a3 https://www.encodeproject.org/files/ENCFF000WGI/@@download/ENCFF000WGI.bam hg19 archived control insufficient read depth, insufficient read depth, insufficient read length ENCFF000WGS fastq reads ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 809088905 Peggy Farnham, USC 6a4911e5f68490ce13a8ff978aa3bc9d https://www.encodeproject.org/files/ENCFF000WGS/@@download/ENCFF000WGS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length control insufficient read depth, insufficient read depth, insufficient read length ENCFF000WGT fastq reads ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 659899492 Peggy Farnham, USC c4f5e75a74a7f345ee17a19cb85f306f https://www.encodeproject.org/files/ENCFF000WGT/@@download/ENCFF000WGT.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released inconsistent control read length control insufficient read depth, insufficient read depth, insufficient read length ENCFF001VFR bed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 19052 Peggy Farnham, USC 6e441c8e5612b32ee2e38f67a413b2de https://www.encodeproject.org/files/ENCFF001VFR/@@download/ENCFF001VFR.bed.gz hg19 archived missing derived_from control insufficient read depth, insufficient read depth, insufficient read length ENCFF002CPV bed narrowPeak optimal idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 54998 ENCODE Consortium Analysis Working Group fb00e0287a7d814462df012a01632819 https://www.encodeproject.org/files/ENCFF002CPV/@@download/ENCFF002CPV.bed.gz hg19 archived missing derived_from control insufficient read depth, insufficient read depth, insufficient read length ENCFF345SSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPV 230685 ENCODE Consortium b1d3a33540b1e0bad4b5bf646712915f https://www.encodeproject.org/files/ENCFF345SSF/@@download/ENCFF345SSF.bigBed hg19 archived control insufficient read depth, insufficient read depth, insufficient read length ENCFF980QHF bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF643CGH 305073054 ENCODE Processing Pipeline 99209ff0aab47d7ff756414f738b30e9 https://www.encodeproject.org/files/ENCFF980QHF/@@download/ENCFF980QHF.bam GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF336WFG bam unfiltered alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF643CGH 898576458 ENCODE Processing Pipeline a897f33c28e6fb80c81b3c7e69f271c1 https://www.encodeproject.org/files/ENCFF336WFG/@@download/ENCFF336WFG.bam GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF481GPP bam unfiltered alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF807MUK 895068371 ENCODE Processing Pipeline 066d7a092996d701e7a97959dc174af0 https://www.encodeproject.org/files/ENCFF481GPP/@@download/ENCFF481GPP.bam hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF947RUP bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF807MUK 305144329 ENCODE Processing Pipeline 034a481bf0fde8637d34261c27ecd28f https://www.encodeproject.org/files/ENCFF947RUP/@@download/ENCFF947RUP.bam hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF047WZX bed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 3303727 ENCODE Processing Pipeline a7732936a2aeded2b9bfec77defe7ab5 https://www.encodeproject.org/files/ENCFF047WZX/@@download/ENCFF047WZX.bed.gz hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF059DKD bigWig signal p-value ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF980QHF 204135478 ENCODE Processing Pipeline 5dcb231ab41261a122949053357a25b9 https://www.encodeproject.org/files/ENCFF059DKD/@@download/ENCFF059DKD.bigWig GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF035URQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF902HNO 86677 ENCODE Processing Pipeline 9903813db5c3dade505105b2cb171c29 https://www.encodeproject.org/files/ENCFF035URQ/@@download/ENCFF035URQ.bigBed hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF985ZEV bigWig fold change over control ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF980QHF 138507744 ENCODE Processing Pipeline 1769a19ff23a92e8563e68493475174d https://www.encodeproject.org/files/ENCFF985ZEV/@@download/ENCFF985ZEV.bigWig GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF437STB bigWig signal p-value ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 203665305 ENCODE Processing Pipeline 3cee5eb2a57fce01c66e7783ce1e6afe https://www.encodeproject.org/files/ENCFF437STB/@@download/ENCFF437STB.bigWig hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF529ADX bed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF980QHF 3606049 ENCODE Processing Pipeline bea2ad34bdfb1dd4c1ec4f7d6e93a3ce https://www.encodeproject.org/files/ENCFF529ADX/@@download/ENCFF529ADX.bed.gz GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF939USR bigWig fold change over control ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 136609621 ENCODE Processing Pipeline bcae4263a5cfdde532959f5d5560d3c0 https://www.encodeproject.org/files/ENCFF939USR/@@download/ENCFF939USR.bigWig hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF416MJG bigBed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF529ADX 9023848 ENCODE Processing Pipeline c507aee108bc7a4f5fc9634291285a75 https://www.encodeproject.org/files/ENCFF416MJG/@@download/ENCFF416MJG.bigBed GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF752IXD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF419RSJ, ENCFF529ADX 18092 ENCODE Processing Pipeline d1a0d9091995e8773e2be9478697ff8a https://www.encodeproject.org/files/ENCFF752IXD/@@download/ENCFF752IXD.bed.gz GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF913EAA bigBed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF047WZX 8411782 ENCODE Processing Pipeline b7ceb7714767cddec5aac5514ae7a6ca https://www.encodeproject.org/files/ENCFF913EAA/@@download/ENCFF913EAA.bigBed hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF841DIU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF752IXD 85343 ENCODE Processing Pipeline 1c5225289458093f44abcc0d47ad0260 https://www.encodeproject.org/files/ENCFF841DIU/@@download/ENCFF841DIU.bigBed GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF902HNO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF001TDO, ENCFF047WZX 18914 ENCODE Processing Pipeline 6f19e637913b758ce50ecff6b0fd36e8 https://www.encodeproject.org/files/ENCFF902HNO/@@download/ENCFF902HNO.bed.gz hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF033ZFD fastq reads ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF753KIN 3584739257 Michael Snyder, Stanford 48b3ce174e074cf001cc189571c48c03 SRA:SRR6213663 https://www.encodeproject.org/files/ENCFF033ZFD/@@download/ENCFF033ZFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF753KIN fastq reads ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF033ZFD 3638080084 Michael Snyder, Stanford 365b7240fbb776f0804ee057392f3509 SRA:SRR6213663 https://www.encodeproject.org/files/ENCFF753KIN/@@download/ENCFF753KIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF204KOO fastq reads ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF668LKZ 2479265855 Michael Snyder, Stanford d3810cc1f70be5d49d49e178dd1b21ec SRA:SRR6213664 https://www.encodeproject.org/files/ENCFF204KOO/@@download/ENCFF204KOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF668LKZ fastq reads ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF204KOO 2510888182 Michael Snyder, Stanford 4c970a2296d40f337330232ca9dd65c4 SRA:SRR6213664 https://www.encodeproject.org/files/ENCFF668LKZ/@@download/ENCFF668LKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF895OHZ bam unfiltered alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF204KOO, ENCFF668LKZ, ENCFF807MUK 5123233452 ENCODE Processing Pipeline 418d681056b967cd74a32dabd471d6d0 https://www.encodeproject.org/files/ENCFF895OHZ/@@download/ENCFF895OHZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF879PRT bam unfiltered alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF204KOO, ENCFF643CGH, ENCFF668LKZ 5130352364 ENCODE Processing Pipeline 2bb9ebe37fc102a4cbd64a4dd8d8b680 https://www.encodeproject.org/files/ENCFF879PRT/@@download/ENCFF879PRT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF025LBM bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF204KOO, ENCFF643CGH, ENCFF668LKZ 4431351654 ENCODE Processing Pipeline d8609da7e5e88655b59d9aae27a53c11 https://www.encodeproject.org/files/ENCFF025LBM/@@download/ENCFF025LBM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF347OMX bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF204KOO, ENCFF668LKZ, ENCFF807MUK 4428555460 ENCODE Processing Pipeline c2d869f442ec1b3d5ff51190572b1878 https://www.encodeproject.org/files/ENCFF347OMX/@@download/ENCFF347OMX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF672TAV bam unfiltered alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF033ZFD, ENCFF753KIN, ENCFF807MUK 7180276422 ENCODE Processing Pipeline aa2d92e5c7a5c9c645cd9eab4f48529b https://www.encodeproject.org/files/ENCFF672TAV/@@download/ENCFF672TAV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF275VAV bam unfiltered alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF033ZFD, ENCFF643CGH, ENCFF753KIN 7188054084 ENCODE Processing Pipeline 8429b22a1e4b768314a70e055d14614e https://www.encodeproject.org/files/ENCFF275VAV/@@download/ENCFF275VAV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF948BJB bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF033ZFD, ENCFF753KIN, ENCFF807MUK 6146212057 ENCODE Processing Pipeline 20fc7f09dfe3d40e799055f8dd1350e4 https://www.encodeproject.org/files/ENCFF948BJB/@@download/ENCFF948BJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF816BLB bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF033ZFD, ENCFF643CGH, ENCFF753KIN 6149371875 ENCODE Processing Pipeline 504249c277c87a019efb548f24ab058a https://www.encodeproject.org/files/ENCFF816BLB/@@download/ENCFF816BLB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF979DMG bigWig signal p-value ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF948BJB 1374409196 ENCODE Processing Pipeline 816831f725a89d0ac9525ac0c982b6e3 https://www.encodeproject.org/files/ENCFF979DMG/@@download/ENCFF979DMG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF794JDE bigWig signal p-value ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF347OMX 1401683998 ENCODE Processing Pipeline bf374b6bcd8925cd279779a43d571ee7 https://www.encodeproject.org/files/ENCFF794JDE/@@download/ENCFF794JDE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF980QHU bigWig signal p-value ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347OMX, ENCFF948BJB 1956476094 ENCODE Processing Pipeline deb2ca56deddaf9728444499094fb385 https://www.encodeproject.org/files/ENCFF980QHU/@@download/ENCFF980QHU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF059SDC bigWig fold change over control ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF948BJB 1591206983 ENCODE Processing Pipeline 63b87550455cc406fb8caf694bb91fa8 https://www.encodeproject.org/files/ENCFF059SDC/@@download/ENCFF059SDC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF505PSR bigWig fold change over control ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF347OMX 1329808213 ENCODE Processing Pipeline 9febdd874d5c4b68f44aabadf1480896 https://www.encodeproject.org/files/ENCFF505PSR/@@download/ENCFF505PSR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF431TXQ bigWig fold change over control ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347OMX, ENCFF948BJB 2048647389 ENCODE Processing Pipeline d892b0c1f560d272f8270f2fc9692ffd https://www.encodeproject.org/files/ENCFF431TXQ/@@download/ENCFF431TXQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF751QTK bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF948BJB 7213565 ENCODE Processing Pipeline aa7108420155617706ea479effbb306b https://www.encodeproject.org/files/ENCFF751QTK/@@download/ENCFF751QTK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF704EOA bigBed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF075ICN 12922728 ENCODE Processing Pipeline b04cf5909aa92637c0edc445ea0c19fc https://www.encodeproject.org/files/ENCFF704EOA/@@download/ENCFF704EOA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF916TEF bed narrowPeak conservative idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF075ICN, ENCFF442GEH, ENCFF751QTK 678666 ENCODE Processing Pipeline d9a3e6f8736debd376721c2ec5503961 https://www.encodeproject.org/files/ENCFF916TEF/@@download/ENCFF916TEF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF442GEH bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF347OMX 7055799 ENCODE Processing Pipeline bcaa103aed7faf7c250583b7d71a0bb7 https://www.encodeproject.org/files/ENCFF442GEH/@@download/ENCFF442GEH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF463GBN bigBed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF751QTK 12867436 ENCODE Processing Pipeline e2defb416125a6ac751a787be586edc3 https://www.encodeproject.org/files/ENCFF463GBN/@@download/ENCFF463GBN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF075ICN bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347OMX, ENCFF948BJB 7301292 ENCODE Processing Pipeline 33dda4eb4715dfe93d2cd8c6c8cd21b8 https://www.encodeproject.org/files/ENCFF075ICN/@@download/ENCFF075ICN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF594SQX bigBed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF442GEH 13263535 ENCODE Processing Pipeline a062a31ff2e5cc284082cb96c6ac97a5 https://www.encodeproject.org/files/ENCFF594SQX/@@download/ENCFF594SQX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF553QNS bed narrowPeak optimal idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF075ICN, ENCFF442GEH, ENCFF751QTK 756903 ENCODE Processing Pipeline 142f59447cd8479a39e335075078acc9 https://www.encodeproject.org/files/ENCFF553QNS/@@download/ENCFF553QNS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF715QKY bigBed narrowPeak conservative idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF916TEF 1734906 ENCODE Processing Pipeline 4dbfa06fb32c9956a987c7f5b00d89a7 https://www.encodeproject.org/files/ENCFF715QKY/@@download/ENCFF715QKY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF403JRM bigBed narrowPeak optimal idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF553QNS 1600390 ENCODE Processing Pipeline fa9d4046b69c2886e2eaebf99e402de0 https://www.encodeproject.org/files/ENCFF403JRM/@@download/ENCFF403JRM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF662NVX bigWig signal p-value ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF816BLB 1508041168 ENCODE Processing Pipeline 49a360693213927a7055f4af6e3b7ffe https://www.encodeproject.org/files/ENCFF662NVX/@@download/ENCFF662NVX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF373AYK bigWig signal p-value ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF025LBM 1159516905 ENCODE Processing Pipeline e507307a3efa75c722b97101cb95e1dd https://www.encodeproject.org/files/ENCFF373AYK/@@download/ENCFF373AYK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF181BPM bigWig signal p-value ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF025LBM, ENCFF816BLB 1933354481 ENCODE Processing Pipeline 11d62a43a4e9cee81fde7549ecfb8cce https://www.encodeproject.org/files/ENCFF181BPM/@@download/ENCFF181BPM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF400VKJ bigWig fold change over control ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF816BLB 1572678019 ENCODE Processing Pipeline acc228c4de8fcc524e105f67a1a520d7 https://www.encodeproject.org/files/ENCFF400VKJ/@@download/ENCFF400VKJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF024PTL bigWig fold change over control ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF025LBM 1346539698 ENCODE Processing Pipeline 2d71f2227fd9b0eff6b3d22aff71bbb6 https://www.encodeproject.org/files/ENCFF024PTL/@@download/ENCFF024PTL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF841UXV bigWig fold change over control ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF025LBM, ENCFF816BLB 2033367222 ENCODE Processing Pipeline 340951770d0f31fc432417f7ad7d9cb4 https://www.encodeproject.org/files/ENCFF841UXV/@@download/ENCFF841UXV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF087NLL bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF816BLB 7271026 ENCODE Processing Pipeline da7d0766b062da22ffdeb424ca4ae7df https://www.encodeproject.org/files/ENCFF087NLL/@@download/ENCFF087NLL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF004WIS bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF025LBM 7027616 ENCODE Processing Pipeline 792e68030aba286d61287def497ec9be https://www.encodeproject.org/files/ENCFF004WIS/@@download/ENCFF004WIS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF374BOA bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF025LBM, ENCFF816BLB 7276016 ENCODE Processing Pipeline 3be4b92b1b888d1cc48abe6d557e99ef https://www.encodeproject.org/files/ENCFF374BOA/@@download/ENCFF374BOA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF270PSW bigBed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF087NLL 12939484 ENCODE Processing Pipeline 0d67d040ee0efcc9f17407f42cc0675a https://www.encodeproject.org/files/ENCFF270PSW/@@download/ENCFF270PSW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF390EXO bigBed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF004WIS 13248414 ENCODE Processing Pipeline 2d603618db3531818290b904c8c1efde https://www.encodeproject.org/files/ENCFF390EXO/@@download/ENCFF390EXO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF152NPR bigBed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF374BOA 12888597 ENCODE Processing Pipeline beff5fba0348e0c5140411575ced17f0 https://www.encodeproject.org/files/ENCFF152NPR/@@download/ENCFF152NPR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF099LCC bed narrowPeak conservative idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF004WIS, ENCFF087NLL, ENCFF374BOA, ENCFF419RSJ 671402 ENCODE Processing Pipeline 64e5ce2acfbe35f4879a9a0a57346c5e https://www.encodeproject.org/files/ENCFF099LCC/@@download/ENCFF099LCC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF894ANM bigBed narrowPeak optimal idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF732VAU 1595045 ENCODE Processing Pipeline 87c9e9043f6216e4cf031cf5aeb0e4a7 https://www.encodeproject.org/files/ENCFF894ANM/@@download/ENCFF894ANM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF517RCU bigBed narrowPeak conservative idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF099LCC 1723886 ENCODE Processing Pipeline 3c5d08b9c6d218946639214667d8ff8e https://www.encodeproject.org/files/ENCFF517RCU/@@download/ENCFF517RCU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF732VAU bed narrowPeak optimal idr thresholded peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF004WIS, ENCFF087NLL, ENCFF374BOA, ENCFF419RSJ 753264 ENCODE Processing Pipeline e6f089ba9a15e4208bf3ba5a11b4cf8d https://www.encodeproject.org/files/ENCFF732VAU/@@download/ENCFF732VAU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF871GTR bam unfiltered alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF460XNN, ENCFF807MUK, ENCFF924MPJ 6818154400 ENCODE Processing Pipeline 8ba998585513b98218828678820a54e5 https://www.encodeproject.org/files/ENCFF871GTR/@@download/ENCFF871GTR.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF235OVM bam unfiltered alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF572KOD, ENCFF807MUK, ENCFF860XRV 7689672864 ENCODE Processing Pipeline 1b35833dc7b9b2b90a6c3540cd04931b https://www.encodeproject.org/files/ENCFF235OVM/@@download/ENCFF235OVM.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF860XRV fastq reads ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 2 ENCFF572KOD 3534052689 Michael Snyder, Stanford c4596f105f0947246577fa5ab9b2e53e SRA:SRR5112427 https://www.encodeproject.org/files/ENCFF860XRV/@@download/ENCFF860XRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released file validation error, borderline replicate concordance mismatched file status ENCFF924MPJ fastq reads ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 1 ENCFF460XNN 3072368677 Michael Snyder, Stanford 7176ec1ef4280ea03030023e0e69ce45 SRA:SRR5112426 https://www.encodeproject.org/files/ENCFF924MPJ/@@download/ENCFF924MPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released file validation error, borderline replicate concordance mismatched file status ENCFF572KOD fastq reads ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 1 100 paired-ended 1 ENCFF860XRV 3503174515 Michael Snyder, Stanford 54ea380252d302873e7842fc957d1d3c SRA:SRR5112427 https://www.encodeproject.org/files/ENCFF572KOD/@@download/ENCFF572KOD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released file validation error, borderline replicate concordance mismatched file status ENCFF460XNN fastq reads ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 1 100 paired-ended 2 ENCFF924MPJ 3112178229 Michael Snyder, Stanford b2e061df52fef9a3ab5419c1cbd8f1ac SRA:SRR5112426 https://www.encodeproject.org/files/ENCFF460XNN/@@download/ENCFF460XNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released file validation error, borderline replicate concordance mismatched file status ENCFF046GTS bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF460XNN, ENCFF807MUK, ENCFF924MPJ 5585705600 ENCODE Processing Pipeline 98cab4bb7628807db82a6113b02293d1 https://www.encodeproject.org/files/ENCFF046GTS/@@download/ENCFF046GTS.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF104TRE bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF572KOD, ENCFF807MUK, ENCFF860XRV 6322715885 ENCODE Processing Pipeline b6403961b83b488f21d502318cb3e4f1 https://www.encodeproject.org/files/ENCFF104TRE/@@download/ENCFF104TRE.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF912NKN bigWig signal p-value ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF104TRE, ENCFF449NNE 1391934588 ENCODE Processing Pipeline 2764a28f6abc9408c286ceca8ce2e95d https://www.encodeproject.org/files/ENCFF912NKN/@@download/ENCFF912NKN.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF618INC bigWig signal p-value ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF046GTS, ENCFF999EQI 894918925 ENCODE Processing Pipeline e33a191e532d770df5813c6dd408ba92 https://www.encodeproject.org/files/ENCFF618INC/@@download/ENCFF618INC.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF020PCZ bigWig signal p-value ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF046GTS, ENCFF104TRE, ENCFF449NNE, ENCFF999EQI 2184747232 ENCODE Processing Pipeline ae72e36f432ad1b24fd1b4e26ddb54be https://www.encodeproject.org/files/ENCFF020PCZ/@@download/ENCFF020PCZ.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF082PDD bigWig fold change over control ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF104TRE, ENCFF449NNE 1398145230 ENCODE Processing Pipeline cfa2f1b348a37dc029fd5a00d8f683c0 https://www.encodeproject.org/files/ENCFF082PDD/@@download/ENCFF082PDD.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF990HWU bigWig fold change over control ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF046GTS, ENCFF999EQI 1134117782 ENCODE Processing Pipeline ae68b01238efa7cdb42b6a351e4a4e4f https://www.encodeproject.org/files/ENCFF990HWU/@@download/ENCFF990HWU.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF626AUN bigWig fold change over control ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF046GTS, ENCFF104TRE, ENCFF449NNE, ENCFF999EQI 2268475408 ENCODE Processing Pipeline e7ff15d131a797f7f028eac3aa88f021 https://www.encodeproject.org/files/ENCFF626AUN/@@download/ENCFF626AUN.bigWig hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF351PSH bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF104TRE, ENCFF449NNE 6112836 ENCODE Processing Pipeline 9ca899c74a37c1ca966d71c8f42c4d9a https://www.encodeproject.org/files/ENCFF351PSH/@@download/ENCFF351PSH.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF808TMF bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF046GTS, ENCFF999EQI 5874289 ENCODE Processing Pipeline b324babc25480e5a57db4d1fda62fa7c https://www.encodeproject.org/files/ENCFF808TMF/@@download/ENCFF808TMF.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF499ZGH bigBed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF871CGQ 11410688 ENCODE Processing Pipeline a5c37f2bf67f058f8466eac2677d6d82 https://www.encodeproject.org/files/ENCFF499ZGH/@@download/ENCFF499ZGH.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF871CGQ bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF046GTS, ENCFF104TRE, ENCFF449NNE, ENCFF999EQI 6986717 ENCODE Processing Pipeline 110339c4512860bae6127c350c3f2851 https://www.encodeproject.org/files/ENCFF871CGQ/@@download/ENCFF871CGQ.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF014AER bed narrowPeak conservative idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF351PSH, ENCFF808TMF, ENCFF871CGQ 12753 ENCODE Processing Pipeline 2deac760f2b771da9fc81eb69d72c56f https://www.encodeproject.org/files/ENCFF014AER/@@download/ENCFF014AER.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF175YML bigBed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF351PSH 11408565 ENCODE Processing Pipeline c476f3ce0f8615da6cc3f4aed85c61d6 https://www.encodeproject.org/files/ENCFF175YML/@@download/ENCFF175YML.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF245EZL bigBed narrowPeak conservative idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF926QHU 71804 ENCODE Processing Pipeline eb0ccce530674e262d1245ea24138bc5 https://www.encodeproject.org/files/ENCFF245EZL/@@download/ENCFF245EZL.bigBed hg19 released file validation error, borderline replicate concordance mismatched status, mismatched file status ENCFF465HVR bigBed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF808TMF 11491017 ENCODE Processing Pipeline 684ce18ed3b06a9c56f0af68395e2695 https://www.encodeproject.org/files/ENCFF465HVR/@@download/ENCFF465HVR.bigBed hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF326RGO bigBed narrowPeak optimal idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF276GUV 112071 ENCODE Processing Pipeline 6cfab1e70954f7dcc230b31150c852e7 https://www.encodeproject.org/files/ENCFF326RGO/@@download/ENCFF326RGO.bigBed hg19 released file validation error, borderline replicate concordance mismatched status, mismatched file status ENCFF948QME bed narrowPeak optimal idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF351PSH, ENCFF808TMF, ENCFF871CGQ 38419 ENCODE Processing Pipeline c0ded052ea5a5545e0986aca0b1ddaf1 https://www.encodeproject.org/files/ENCFF948QME/@@download/ENCFF948QME.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF387YTM bam unfiltered alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF460XNN, ENCFF643CGH, ENCFF924MPJ 6833660784 ENCODE Processing Pipeline c0fdb8abfa1438c50b0e2e4a1685cadf https://www.encodeproject.org/files/ENCFF387YTM/@@download/ENCFF387YTM.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF934BVW bam unfiltered alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF572KOD, ENCFF643CGH, ENCFF860XRV 7706907020 ENCODE Processing Pipeline bb3d8d5d73be285f27ffd1b041e4e755 https://www.encodeproject.org/files/ENCFF934BVW/@@download/ENCFF934BVW.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF341JFD bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF460XNN, ENCFF643CGH, ENCFF924MPJ 5604075096 ENCODE Processing Pipeline 1d4f542462541fc5056c7e48ed338f38 https://www.encodeproject.org/files/ENCFF341JFD/@@download/ENCFF341JFD.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF943EOC bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF572KOD, ENCFF643CGH, ENCFF860XRV 6343890367 ENCODE Processing Pipeline 273d419afdce690f61a41d41bbb60356 https://www.encodeproject.org/files/ENCFF943EOC/@@download/ENCFF943EOC.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF157SGE bigWig signal p-value ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF190EPQ, ENCFF943EOC 1433958411 ENCODE Processing Pipeline cbdb219b6eb6fb98045360e48e26440b https://www.encodeproject.org/files/ENCFF157SGE/@@download/ENCFF157SGE.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF007TVE bigWig signal p-value ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF341JFD, ENCFF950AXC 1092786401 ENCODE Processing Pipeline 6840a6948aa41114cc91c00a3cc420c9 https://www.encodeproject.org/files/ENCFF007TVE/@@download/ENCFF007TVE.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF333GYV bigWig signal p-value ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF341JFD, ENCFF943EOC, ENCFF950AXC 1960242777 ENCODE Processing Pipeline a62facb3337c437319b9e97583c2811f https://www.encodeproject.org/files/ENCFF333GYV/@@download/ENCFF333GYV.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF304TFI bigWig fold change over control ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF190EPQ, ENCFF943EOC 1398215715 ENCODE Processing Pipeline bf79b5f3c07de12383db696de089668d https://www.encodeproject.org/files/ENCFF304TFI/@@download/ENCFF304TFI.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF455QPO bigWig fold change over control ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF341JFD, ENCFF950AXC 1131388525 ENCODE Processing Pipeline a211c81805a8f4ffa0d456ea5b014dd3 https://www.encodeproject.org/files/ENCFF455QPO/@@download/ENCFF455QPO.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF107XFS bigWig fold change over control ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF341JFD, ENCFF943EOC, ENCFF950AXC 2231732151 ENCODE Processing Pipeline 9a90ab9ecc3de827efc1d04a45cf5f8b https://www.encodeproject.org/files/ENCFF107XFS/@@download/ENCFF107XFS.bigWig GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF669MFH bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF190EPQ, ENCFF943EOC 5908526 ENCODE Processing Pipeline 7919a9ebe47e17e290e9991faf110ced https://www.encodeproject.org/files/ENCFF669MFH/@@download/ENCFF669MFH.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF113RRN bigBed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF669MFH 11409058 ENCODE Processing Pipeline a898c4fe48217dd45225ab7c1057c0ca https://www.encodeproject.org/files/ENCFF113RRN/@@download/ENCFF113RRN.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF516BQY bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF190EPQ, ENCFF341JFD, ENCFF943EOC, ENCFF950AXC 6969215 ENCODE Processing Pipeline 3db8eea0edb88ac0ddd775e5a470989c https://www.encodeproject.org/files/ENCFF516BQY/@@download/ENCFF516BQY.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF137MSK bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF341JFD, ENCFF950AXC 5553049 ENCODE Processing Pipeline bcea94b16c52808e5dea4658cc1d302f https://www.encodeproject.org/files/ENCFF137MSK/@@download/ENCFF137MSK.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF203UYM bigBed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF137MSK 11432682 ENCODE Processing Pipeline 471709f8e9cc749f9ac273adb9afab19 https://www.encodeproject.org/files/ENCFF203UYM/@@download/ENCFF203UYM.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF437TAZ bigBed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF516BQY 11409511 ENCODE Processing Pipeline 2bb7f5b54d237266d743f0687417b4c5 https://www.encodeproject.org/files/ENCFF437TAZ/@@download/ENCFF437TAZ.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF716ZFO bigBed narrowPeak conservative idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF685AMZ 107541 ENCODE Processing Pipeline 45d2bba3a306cf7cc08082afb13c1547 https://www.encodeproject.org/files/ENCFF716ZFO/@@download/ENCFF716ZFO.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF176NFY bigBed narrowPeak optimal idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF873OHG 148627 ENCODE Processing Pipeline 6284a0e87ba3c869bd0aa697cfacb7e2 https://www.encodeproject.org/files/ENCFF176NFY/@@download/ENCFF176NFY.bigBed GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF685AMZ bed narrowPeak conservative idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF137MSK, ENCFF419RSJ, ENCFF516BQY, ENCFF669MFH 18337 ENCODE Processing Pipeline 1ca5538f65ea7f6ed94893821a9133e9 https://www.encodeproject.org/files/ENCFF685AMZ/@@download/ENCFF685AMZ.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF873OHG bed narrowPeak optimal idr thresholded peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1, 2 ENCFF137MSK, ENCFF419RSJ, ENCFF516BQY, ENCFF669MFH 47005 ENCODE Processing Pipeline cf0ae14d0194a7b36008c73bad1d5dbe https://www.encodeproject.org/files/ENCFF873OHG/@@download/ENCFF873OHG.bed.gz GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF641KSE fastq reads ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 1 ENCFF246RFD 2553916712 Michael Snyder, Stanford 2363c27aa2576bc10102ed6221357cd0 SRA:SRR6213638 https://www.encodeproject.org/files/ENCFF641KSE/@@download/ENCFF641KSE.fastq.gz Illumina HiSeq 4000 /files/ENCFF890NBB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF246RFD fastq reads ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 2 ENCFF641KSE 2620870403 Michael Snyder, Stanford a728f776d14f683a536769b36b63ddef SRA:SRR6213638 https://www.encodeproject.org/files/ENCFF246RFD/@@download/ENCFF246RFD.fastq.gz Illumina HiSeq 4000 /files/ENCFF261WQL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF024XGX bam unfiltered alignments ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF246RFD, ENCFF641KSE, ENCFF807MUK 4645026443 ENCODE Processing Pipeline a15928cf94b0492f90785c99f9725eaa https://www.encodeproject.org/files/ENCFF024XGX/@@download/ENCFF024XGX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF259VOQ bam unfiltered alignments ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF246RFD, ENCFF641KSE, ENCFF643CGH 4643140371 ENCODE Processing Pipeline 1b90bf49ebbcb3a23dfbd9b2c343f721 https://www.encodeproject.org/files/ENCFF259VOQ/@@download/ENCFF259VOQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF640KGV bam alignments ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF246RFD, ENCFF641KSE, ENCFF643CGH 2830596261 ENCODE Processing Pipeline 62145edeb89da06bb703d12a0693c160 https://www.encodeproject.org/files/ENCFF640KGV/@@download/ENCFF640KGV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF616FYK bam alignments ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF246RFD, ENCFF641KSE, ENCFF807MUK 2827076655 ENCODE Processing Pipeline de98e02b8dd108a8b6c8e9dca4aa7220 https://www.encodeproject.org/files/ENCFF616FYK/@@download/ENCFF616FYK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF430AWA bed narrowPeak peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF381HBZ, ENCFF616FYK 4760938 ENCODE Processing Pipeline 7cf1f5d003f47cfb7061312d9573f22b https://www.encodeproject.org/files/ENCFF430AWA/@@download/ENCFF430AWA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF027FNL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF818LBB 215139 ENCODE Processing Pipeline 2a8c2fbc220c5076856c173876fe1adb https://www.encodeproject.org/files/ENCFF027FNL/@@download/ENCFF027FNL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF250BOQ bigWig signal p-value ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF381HBZ, ENCFF616FYK 975837782 ENCODE Processing Pipeline 508222895e69046c733d11226259bccf https://www.encodeproject.org/files/ENCFF250BOQ/@@download/ENCFF250BOQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF818LBB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF430AWA 97498 ENCODE Processing Pipeline 6e9cc0d575197873ae8a5f7db090d931 https://www.encodeproject.org/files/ENCFF818LBB/@@download/ENCFF818LBB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF864AQK bigWig fold change over control ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF381HBZ, ENCFF616FYK 990599705 ENCODE Processing Pipeline 9a762462133d7ed2f906353da90e4db9 https://www.encodeproject.org/files/ENCFF864AQK/@@download/ENCFF864AQK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF209WZW bigBed narrowPeak peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF430AWA 11702237 ENCODE Processing Pipeline d798b82936f1cd83ade12805d7b5ad62 https://www.encodeproject.org/files/ENCFF209WZW/@@download/ENCFF209WZW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF060YBX bigWig signal p-value ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF289LPR, ENCFF640KGV 1197814114 ENCODE Processing Pipeline 716e42009c41b9ed9c5043693abbd2ca https://www.encodeproject.org/files/ENCFF060YBX/@@download/ENCFF060YBX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF535ZQY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF818GNJ 215253 ENCODE Processing Pipeline b74003ea5af292c5022e7141fc1b4501 https://www.encodeproject.org/files/ENCFF535ZQY/@@download/ENCFF535ZQY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF956WVT bigWig fold change over control ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF289LPR, ENCFF640KGV 996672834 ENCODE Processing Pipeline 88e5d3b94d7c1623ad7e32f63993d1dc https://www.encodeproject.org/files/ENCFF956WVT/@@download/ENCFF956WVT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF954SMI bed narrowPeak peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF289LPR, ENCFF640KGV 4764000 ENCODE Processing Pipeline d8356b3c23c866074f5dd57d2e98df82 https://www.encodeproject.org/files/ENCFF954SMI/@@download/ENCFF954SMI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF002PLT bigBed narrowPeak peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF954SMI 11726531 ENCODE Processing Pipeline 38caaa5772044048ce623346b26677e1 https://www.encodeproject.org/files/ENCFF002PLT/@@download/ENCFF002PLT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF818GNJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF419RSJ, ENCFF954SMI 96711 ENCODE Processing Pipeline 7c717450def9def827c42005832eb5ee https://www.encodeproject.org/files/ENCFF818GNJ/@@download/ENCFF818GNJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000NDC bam alignments ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NDP 1316465691 Richard Myers, HAIB 1be84dfb930067109b70f4dabf8d134d https://www.encodeproject.org/files/ENCFF000NDC/@@download/ENCFF000NDC.bam hg19 released biological replicates with identical biosample ENCFF000NDE bigBed broadPeak peaks ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TSX 907079 Richard Myers, HAIB dc8331648e76abd5c4203b0f17369332 https://www.encodeproject.org/files/ENCFF000NDE/@@download/ENCFF000NDE.bigBed hg19 released biological replicates with identical biosample ENCFF000NDG bigBed broadPeak peaks ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TSY 849239 Richard Myers, HAIB c0288dbc99cb51f7bb65e7845912fced https://www.encodeproject.org/files/ENCFF000NDG/@@download/ENCFF000NDG.bigBed hg19 released biological replicates with identical biosample ENCFF000NDI bigWig raw signal ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 231420404 Richard Myers, HAIB 43f906469749e3215cb737b9ae117e58 https://www.encodeproject.org/files/ENCFF000NDI/@@download/ENCFF000NDI.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NDJ bam alignments ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NDT 1978098018 Richard Myers, HAIB 17562496b8f066c98adf304786b4b8a2 https://www.encodeproject.org/files/ENCFF000NDJ/@@download/ENCFF000NDJ.bam hg19 released biological replicates with identical biosample ENCFF000NDK bigWig raw signal ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 233532482 Richard Myers, HAIB 6437516b0be7d600a021704aeea56f78 https://www.encodeproject.org/files/ENCFF000NDK/@@download/ENCFF000NDK.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NDP fastq reads ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1359862995 Richard Myers, HAIB 07184485a2229cf3b5396a0cc01c4bfc https://www.encodeproject.org/files/ENCFF000NDP/@@download/ENCFF000NDP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF000NDT fastq reads ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2053966274 Richard Myers, HAIB 599224356e184c316ed7311cde2f04ec https://www.encodeproject.org/files/ENCFF000NDT/@@download/ENCFF000NDT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF001TSX bed broadPeak peaks ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 543876 Richard Myers, HAIB 372261302b30bf864e1f2a8806a72597 https://www.encodeproject.org/files/ENCFF001TSX/@@download/ENCFF001TSX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TSY bed broadPeak peaks ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 460975 Richard Myers, HAIB 2e07959789daf901e7edef793da6687f https://www.encodeproject.org/files/ENCFF001TSY/@@download/ENCFF001TSY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF386GSM bam unfiltered alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 100 ENCFF222FXU, ENCFF687HHR, ENCFF807MUK 3763127698 ENCODE Processing Pipeline 89a30316fcdb877f952345c1b321de86 https://www.encodeproject.org/files/ENCFF386GSM/@@download/ENCFF386GSM.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF210FPV bam unfiltered alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 100 ENCFF015LUT, ENCFF424OOE, ENCFF807MUK 5238881297 ENCODE Processing Pipeline 1034b9525b814eaa3c795370cb735712 https://www.encodeproject.org/files/ENCFF210FPV/@@download/ENCFF210FPV.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF222FXU fastq reads ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF687HHR 1780276130 Michael Snyder, Stanford 982b019adbb53bafd92b3906d3ab03a9 SRA:SRR5111570 https://www.encodeproject.org/files/ENCFF222FXU/@@download/ENCFF222FXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF424OOE fastq reads ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF015LUT 2556853990 Michael Snyder, Stanford 3e7e1f474ff6bf9259239685d11358bc SRA:SRR5111569 https://www.encodeproject.org/files/ENCFF424OOE/@@download/ENCFF424OOE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF015LUT fastq reads ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF424OOE 2471598416 Michael Snyder, Stanford 7c5da32a69637ae0633eeef40a8560b4 SRA:SRR5111569 https://www.encodeproject.org/files/ENCFF015LUT/@@download/ENCFF015LUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF687HHR fastq reads ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF222FXU 1741762463 Michael Snyder, Stanford 40573ab65c2852027440745d2eb03b24 SRA:SRR5111570 https://www.encodeproject.org/files/ENCFF687HHR/@@download/ENCFF687HHR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF475POO bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 100 ENCFF222FXU, ENCFF687HHR, ENCFF807MUK 2985622814 ENCODE Processing Pipeline 4b0204c763f02d336cf636618046ef54 https://www.encodeproject.org/files/ENCFF475POO/@@download/ENCFF475POO.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF572MZM bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 100 ENCFF015LUT, ENCFF424OOE, ENCFF807MUK 3770325300 ENCODE Processing Pipeline af01170edff6dc5163e2d69bae7573e3 https://www.encodeproject.org/files/ENCFF572MZM/@@download/ENCFF572MZM.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF624CHS bigWig signal p-value ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF475POO, ENCFF581ZJL 1019498824 ENCODE Processing Pipeline 14b7f8727520de8e7cffb680780d1ffd https://www.encodeproject.org/files/ENCFF624CHS/@@download/ENCFF624CHS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF817GCQ bigWig signal p-value ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF572MZM 919118993 ENCODE Processing Pipeline 148d7d21bf99f79f5532c95ec6332412 https://www.encodeproject.org/files/ENCFF817GCQ/@@download/ENCFF817GCQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF401SIW bigWig signal p-value ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF475POO, ENCFF572MZM, ENCFF581ZJL 1684055467 ENCODE Processing Pipeline 0c13449cedfea17159a44e43d77cd168 https://www.encodeproject.org/files/ENCFF401SIW/@@download/ENCFF401SIW.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF604HBX bigWig fold change over control ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF475POO, ENCFF581ZJL 950239428 ENCODE Processing Pipeline b8287e8e6b8f4eb0e8e731ae46a70e6e https://www.encodeproject.org/files/ENCFF604HBX/@@download/ENCFF604HBX.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF146LSA bigWig fold change over control ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF572MZM 981372742 ENCODE Processing Pipeline fdf5677c8c5fc64add55f7fde78bf53f https://www.encodeproject.org/files/ENCFF146LSA/@@download/ENCFF146LSA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF012KOC bigWig fold change over control ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF475POO, ENCFF572MZM, ENCFF581ZJL 1873265379 ENCODE Processing Pipeline bc5fb728bca7b8014a3fc847f2776314 https://www.encodeproject.org/files/ENCFF012KOC/@@download/ENCFF012KOC.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF303CAQ bigBed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF038VEX 12969411 ENCODE Processing Pipeline 00018335d1c44196519e5173ca528708 https://www.encodeproject.org/files/ENCFF303CAQ/@@download/ENCFF303CAQ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF723ESB bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF475POO, ENCFF581ZJL 6989631 ENCODE Processing Pipeline c5a9c9206e878fe8941bc3ea139ce753 https://www.encodeproject.org/files/ENCFF723ESB/@@download/ENCFF723ESB.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF669ACI bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF572MZM 7096163 ENCODE Processing Pipeline b03385abd664a172cb86eefdadf9db0a https://www.encodeproject.org/files/ENCFF669ACI/@@download/ENCFF669ACI.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF927LKL bigBed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF723ESB 13063264 ENCODE Processing Pipeline 4ad1b018bde468067d7941dda975b2ac https://www.encodeproject.org/files/ENCFF927LKL/@@download/ENCFF927LKL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF118BTU bigBed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF669ACI 13012535 ENCODE Processing Pipeline b4c1c68498ccb430e420150ab48444cf https://www.encodeproject.org/files/ENCFF118BTU/@@download/ENCFF118BTU.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF038VEX bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF475POO, ENCFF572MZM, ENCFF581ZJL 7196410 ENCODE Processing Pipeline 5c35cc55400ee755f9c829f3ec65fbd0 https://www.encodeproject.org/files/ENCFF038VEX/@@download/ENCFF038VEX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF781YKJ bam unfiltered alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 100 ENCFF222FXU, ENCFF643CGH, ENCFF687HHR 3764916371 ENCODE Processing Pipeline bc50bb62f53a735d88dd5b7c05e9e150 https://www.encodeproject.org/files/ENCFF781YKJ/@@download/ENCFF781YKJ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF160IPT bam unfiltered alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 100 ENCFF015LUT, ENCFF424OOE, ENCFF643CGH 5241783123 ENCODE Processing Pipeline 05f5a229ddee895fc2c314eec6f9ef27 https://www.encodeproject.org/files/ENCFF160IPT/@@download/ENCFF160IPT.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF013MXK bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 100 ENCFF222FXU, ENCFF643CGH, ENCFF687HHR 2987344134 ENCODE Processing Pipeline 43c907f47ea5ad1ba6f8d22ef238320c https://www.encodeproject.org/files/ENCFF013MXK/@@download/ENCFF013MXK.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF752FIR bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 100 ENCFF015LUT, ENCFF424OOE, ENCFF643CGH 3772020005 ENCODE Processing Pipeline a6c5a1344915b1e6119c0cca0f6a8f5d https://www.encodeproject.org/files/ENCFF752FIR/@@download/ENCFF752FIR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF133WOT bigWig signal p-value ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF013MXK, ENCFF910IKB 997364788 ENCODE Processing Pipeline 4d1fa5c21b98e19ab0c44b336ae3de00 https://www.encodeproject.org/files/ENCFF133WOT/@@download/ENCFF133WOT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF191ZBQ bigWig signal p-value ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF752FIR 974897681 ENCODE Processing Pipeline 613bac975408b49e48e7d3c4c66a81df https://www.encodeproject.org/files/ENCFF191ZBQ/@@download/ENCFF191ZBQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF457EGB bigWig signal p-value ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF013MXK, ENCFF227IZS, ENCFF752FIR, ENCFF910IKB 1863353015 ENCODE Processing Pipeline a3a63f1f3669fcc6bf709c35340a28cf https://www.encodeproject.org/files/ENCFF457EGB/@@download/ENCFF457EGB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF590UTP bigWig fold change over control ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF013MXK, ENCFF910IKB 949490462 ENCODE Processing Pipeline e843fd46a9e9af29319ddd3b7f172523 https://www.encodeproject.org/files/ENCFF590UTP/@@download/ENCFF590UTP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF166RSX bigWig fold change over control ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF752FIR 981978933 ENCODE Processing Pipeline e112c046f8e5552c354f55df92eeaa8d https://www.encodeproject.org/files/ENCFF166RSX/@@download/ENCFF166RSX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF517NJW bigWig fold change over control ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF013MXK, ENCFF227IZS, ENCFF752FIR, ENCFF910IKB 1869957524 ENCODE Processing Pipeline c745d80903621361bef7a9b013c3bb10 https://www.encodeproject.org/files/ENCFF517NJW/@@download/ENCFF517NJW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF306ZCS bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF752FIR 6904325 ENCODE Processing Pipeline 6ff0167ab161220441f612e445384f5c https://www.encodeproject.org/files/ENCFF306ZCS/@@download/ENCFF306ZCS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF794ZCA bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF013MXK, ENCFF910IKB 6884550 ENCODE Processing Pipeline e8a0848a77d27b6f4b0d2db77210cb99 https://www.encodeproject.org/files/ENCFF794ZCA/@@download/ENCFF794ZCA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF698BNB bigBed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF306ZCS 12831372 ENCODE Processing Pipeline 87e4240381b4fbc0c52f260a35b2a32f https://www.encodeproject.org/files/ENCFF698BNB/@@download/ENCFF698BNB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF957QFG bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF013MXK, ENCFF227IZS, ENCFF752FIR, ENCFF910IKB 7097074 ENCODE Processing Pipeline 542ae9664bb7ff56bbe3b4b0763a9189 https://www.encodeproject.org/files/ENCFF957QFG/@@download/ENCFF957QFG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF242WGY bigBed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF794ZCA 13015302 ENCODE Processing Pipeline 6a5807ec5ee3a4c697f69411c221f90d https://www.encodeproject.org/files/ENCFF242WGY/@@download/ENCFF242WGY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF337FYR bigBed narrowPeak conservative idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF214VWR 1525823 ENCODE Processing Pipeline abcefe0f5c7f75dd40773888923fd23c https://www.encodeproject.org/files/ENCFF337FYR/@@download/ENCFF337FYR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF427GIQ bigBed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF957QFG 12856273 ENCODE Processing Pipeline 4756c4835fb9065bbbd89d94a4f95955 https://www.encodeproject.org/files/ENCFF427GIQ/@@download/ENCFF427GIQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF994OQH bed narrowPeak optimal idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF306ZCS, ENCFF419RSJ, ENCFF794ZCA, ENCFF957QFG 959869 ENCODE Processing Pipeline c34f95ee3df4e2e3e5092c6da750dd67 https://www.encodeproject.org/files/ENCFF994OQH/@@download/ENCFF994OQH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF214VWR bed narrowPeak conservative idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF306ZCS, ENCFF419RSJ, ENCFF794ZCA, ENCFF957QFG 860812 ENCODE Processing Pipeline 2f15c06fecd9a0b8c63cdecd7e14a905 https://www.encodeproject.org/files/ENCFF214VWR/@@download/ENCFF214VWR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF330ZPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF994OQH 1668214 ENCODE Processing Pipeline 724da0ed673036cc7726d1bc76afdc14 https://www.encodeproject.org/files/ENCFF330ZPJ/@@download/ENCFF330ZPJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF058ETY bigBed narrowPeak optimal idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF968JVX 1524530 ENCODE Processing Pipeline 346bf45f7d8be94be90f8e57a68e0433 https://www.encodeproject.org/files/ENCFF058ETY/@@download/ENCFF058ETY.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF429YHE bigBed narrowPeak conservative idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF570TDY 1396184 ENCODE Processing Pipeline 0cc4ce0ea9e62c76312a60d8d4b3795c https://www.encodeproject.org/files/ENCFF429YHE/@@download/ENCFF429YHE.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF570TDY bed narrowPeak conservative idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF038VEX, ENCFF669ACI, ENCFF723ESB 759062 ENCODE Processing Pipeline b4cd03af3d9947e55e0ac2f0e7a7278e https://www.encodeproject.org/files/ENCFF570TDY/@@download/ENCFF570TDY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF968JVX bed narrowPeak optimal idr thresholded peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF038VEX, ENCFF669ACI, ENCFF723ESB 853540 ENCODE Processing Pipeline 684bdc0057a6241a64f889a8afb4cd56 https://www.encodeproject.org/files/ENCFF968JVX/@@download/ENCFF968JVX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF982FBQ fastq reads ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF837IQA 3580696230 Michael Snyder, Stanford 99dee1fccf954e33010e19ca93993f9c SRA:SRR6213681 https://www.encodeproject.org/files/ENCFF982FBQ/@@download/ENCFF982FBQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF053VYX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF837IQA fastq reads ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF982FBQ 4015316169 Michael Snyder, Stanford e8cd0f237dcca1a8b38ac6003fa7fc66 SRA:SRR6213681 https://www.encodeproject.org/files/ENCFF837IQA/@@download/ENCFF837IQA.fastq.gz Illumina HiSeq 4000 /files/ENCFF412PFB/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF352CYE bam unfiltered alignments ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF807MUK, ENCFF837IQA, ENCFF982FBQ 7032306283 ENCODE Processing Pipeline dfbdb6dd0dfc98ab540d20e644b0376c https://www.encodeproject.org/files/ENCFF352CYE/@@download/ENCFF352CYE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF050KRZ bam unfiltered alignments ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF643CGH, ENCFF837IQA, ENCFF982FBQ 7041155021 ENCODE Processing Pipeline 70acccc5a126be611e8e474b89067132 https://www.encodeproject.org/files/ENCFF050KRZ/@@download/ENCFF050KRZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF268VSP bam alignments ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF807MUK, ENCFF837IQA, ENCFF982FBQ 5726441242 ENCODE Processing Pipeline d4fcfd119bd877798b46db8c04b6e501 https://www.encodeproject.org/files/ENCFF268VSP/@@download/ENCFF268VSP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF722XIO bam alignments ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF643CGH, ENCFF837IQA, ENCFF982FBQ 5732888080 ENCODE Processing Pipeline 7948c224d2cb87780be43d581454fd6a https://www.encodeproject.org/files/ENCFF722XIO/@@download/ENCFF722XIO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF723TRM bigWig signal p-value ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF188GWO, ENCFF268VSP 1404968199 ENCODE Processing Pipeline 7f0363b3997fd17807602651cfc174cf https://www.encodeproject.org/files/ENCFF723TRM/@@download/ENCFF723TRM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF366PVU bigWig fold change over control ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF188GWO, ENCFF268VSP 1673529840 ENCODE Processing Pipeline 39a38a2b0f9d3fdab9a121da7d1c0639 https://www.encodeproject.org/files/ENCFF366PVU/@@download/ENCFF366PVU.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF161GSW bed narrowPeak peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF188GWO, ENCFF268VSP 6381799 ENCODE Processing Pipeline 10ed9f8ad9018f81076149a0b86f3700 https://www.encodeproject.org/files/ENCFF161GSW/@@download/ENCFF161GSW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF671CVO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF799TEQ 459585 ENCODE Processing Pipeline 3a79997ed061440515fb137f379b078f https://www.encodeproject.org/files/ENCFF671CVO/@@download/ENCFF671CVO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF323CGV bigBed narrowPeak peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF161GSW 11483289 ENCODE Processing Pipeline fb40724d7ee86720e93339651d631b4b https://www.encodeproject.org/files/ENCFF323CGV/@@download/ENCFF323CGV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF799TEQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF161GSW 229498 ENCODE Processing Pipeline cad6ebeed33e1f8846e27aaf957fbc1b https://www.encodeproject.org/files/ENCFF799TEQ/@@download/ENCFF799TEQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF297JYX bigWig signal p-value ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF722XIO, ENCFF895WIL 1456524885 ENCODE Processing Pipeline 9e1f1251419066ccabe8fcd551dfd5b2 https://www.encodeproject.org/files/ENCFF297JYX/@@download/ENCFF297JYX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF314DQV bigWig fold change over control ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF722XIO, ENCFF895WIL 1749158393 ENCODE Processing Pipeline 08d53022426b40f8f783495b7f6a856f https://www.encodeproject.org/files/ENCFF314DQV/@@download/ENCFF314DQV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF484ERD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF323FPP 468765 ENCODE Processing Pipeline 85adc02626657f6542ee340b4257fd8c https://www.encodeproject.org/files/ENCFF484ERD/@@download/ENCFF484ERD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF049TMA bed narrowPeak peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF722XIO, ENCFF895WIL 6321538 ENCODE Processing Pipeline 8cc25a7f3b6ae2e6e7ffad88bad040f7 https://www.encodeproject.org/files/ENCFF049TMA/@@download/ENCFF049TMA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF552XOE bigBed narrowPeak peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF049TMA 11490573 ENCODE Processing Pipeline e961b92884b459b8f71180d457a234c9 https://www.encodeproject.org/files/ENCFF552XOE/@@download/ENCFF552XOE.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF323FPP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF049TMA, ENCFF419RSJ 235005 ENCODE Processing Pipeline 710c4d5af6bd2f4fc53c5012fc925d62 https://www.encodeproject.org/files/ENCFF323FPP/@@download/ENCFF323FPP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF697SME bam unfiltered alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDS, ENCFF807MUK 1078859113 ENCODE Processing Pipeline 3e9c4526460fa9554bb6f3a9d4cd5d06 https://www.encodeproject.org/files/ENCFF697SME/@@download/ENCFF697SME.bam hg19 released low read length, low read depth ENCFF511PEB bam unfiltered alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDN, ENCFF807MUK 1048102210 ENCODE Processing Pipeline 8e5f7608d0e47b07e0dc839bd78c4b9b https://www.encodeproject.org/files/ENCFF511PEB/@@download/ENCFF511PEB.bam hg19 released low read length, low read depth ENCFF131OMP bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 521986339 ENCODE Processing Pipeline 9987d4306ed28b58cb012ef44927ddfa https://www.encodeproject.org/files/ENCFF131OMP/@@download/ENCFF131OMP.bigWig hg19 released low read length, low read depth ENCFF967WUD bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF863VMN, ENCFF871YZO, ENCFF931AAW 953437462 ENCODE Processing Pipeline 2455512bfc4dcbaef1d86b6e5bcbae2c https://www.encodeproject.org/files/ENCFF967WUD/@@download/ENCFF967WUD.bigWig hg19 released low read length, low read depth ENCFF702PQE bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 418752908 ENCODE Processing Pipeline 0322b480a07ced89bbe045fcd0ee4321 https://www.encodeproject.org/files/ENCFF702PQE/@@download/ENCFF702PQE.bigWig hg19 released low read length, low read depth ENCFF096MQD bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF863VMN, ENCFF871YZO, ENCFF931AAW 919108352 ENCODE Processing Pipeline 7e343f7c5ffa9abbc44e5ed6f5c7b937 https://www.encodeproject.org/files/ENCFF096MQD/@@download/ENCFF096MQD.bigWig hg19 released low read length, low read depth ENCFF738IWJ bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF871YZO 4325389 ENCODE Processing Pipeline 2eae6944463cabec0764fddb97531e99 https://www.encodeproject.org/files/ENCFF738IWJ/@@download/ENCFF738IWJ.bed.gz hg19 released low read length, low read depth ENCFF708LWT bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 4652004 ENCODE Processing Pipeline ddcef531b8008fc4729329332ca383ef https://www.encodeproject.org/files/ENCFF708LWT/@@download/ENCFF708LWT.bed.gz hg19 released low read length, low read depth ENCFF103LIH bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF863VMN, ENCFF871YZO, ENCFF931AAW 6036512 ENCODE Processing Pipeline 30816e24a8be33bb0a2ae12e1d730554 https://www.encodeproject.org/files/ENCFF103LIH/@@download/ENCFF103LIH.bed.gz hg19 released low read length, low read depth ENCFF109GRT bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF738IWJ 10668869 ENCODE Processing Pipeline 2613ba00f60bb578db3de8bc3a33b0be https://www.encodeproject.org/files/ENCFF109GRT/@@download/ENCFF109GRT.bigBed hg19 released low read length, low read depth ENCFF361WNE bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF708LWT 10921270 ENCODE Processing Pipeline 650f15a41a559abe83727d35ad762901 https://www.encodeproject.org/files/ENCFF361WNE/@@download/ENCFF361WNE.bigBed hg19 released low read length, low read depth ENCFF125RMF bed narrowPeak conservative idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF103LIH, ENCFF708LWT, ENCFF738IWJ 95604 ENCODE Processing Pipeline 6f375fd6f343ba8e8f25922809bef9a7 https://www.encodeproject.org/files/ENCFF125RMF/@@download/ENCFF125RMF.bed.gz hg19 released low read length, low read depth ENCFF684UCP bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF103LIH 11316236 ENCODE Processing Pipeline 8e6784581b580b0c006a30b5dea32d8f https://www.encodeproject.org/files/ENCFF684UCP/@@download/ENCFF684UCP.bigBed hg19 released low read length, low read depth ENCFF997AAW bed narrowPeak optimal idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF103LIH, ENCFF708LWT, ENCFF738IWJ 112216 ENCODE Processing Pipeline 53a70ccc5c4326fe942b548aae05eb6b https://www.encodeproject.org/files/ENCFF997AAW/@@download/ENCFF997AAW.bed.gz hg19 released low read length, low read depth ENCFF649YFI bigBed narrowPeak conservative idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF125RMF 213443 ENCODE Processing Pipeline 88d4704cd13061b8abfcae97bbd14bc9 https://www.encodeproject.org/files/ENCFF649YFI/@@download/ENCFF649YFI.bigBed hg19 released low read length, low read depth ENCFF315SHL bigBed narrowPeak optimal idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF997AAW 236180 ENCODE Processing Pipeline 1a98ff90bd28804b7f51e89de8d7858c https://www.encodeproject.org/files/ENCFF315SHL/@@download/ENCFF315SHL.bigBed hg19 released low read length, low read depth ENCFF002EDN fastq reads ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 727483569 Michael Snyder, Stanford b716c091fc0cb2583d1217a796b1fbde SRA:SRR5111727 https://www.encodeproject.org/files/ENCFF002EDN/@@download/ENCFF002EDN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, low read depth ENCFF002EDS fastq reads ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 757211639 Michael Snyder, Stanford 1aa7a253ff5c7c451db7c432ada7f0c4 SRA:SRR5111726 https://www.encodeproject.org/files/ENCFF002EDS/@@download/ENCFF002EDS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, low read depth ENCFF931AAW bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDS, ENCFF807MUK 757712527 ENCODE Processing Pipeline b93e771c48c8c59a50cbbdbb7b925438 https://www.encodeproject.org/files/ENCFF931AAW/@@download/ENCFF931AAW.bam hg19 released low read length, low read depth ENCFF871YZO bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDN, ENCFF807MUK 720560153 ENCODE Processing Pipeline 6afe7068cf8dcb8145d47288e2fa7402 https://www.encodeproject.org/files/ENCFF871YZO/@@download/ENCFF871YZO.bam hg19 released low read length, low read depth ENCFF837DDJ bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF871YZO 507122349 ENCODE Processing Pipeline 52c68ce5232b731c4857e32341b775e1 https://www.encodeproject.org/files/ENCFF837DDJ/@@download/ENCFF837DDJ.bigWig hg19 released low read length, low read depth ENCFF604MWO bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 521907147 ENCODE Processing Pipeline 25dab730dd25ad8cc09667433f340a8d https://www.encodeproject.org/files/ENCFF604MWO/@@download/ENCFF604MWO.bigWig hg19 archived low read length, low read depth ENCFF793KPD bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF863VMN, ENCFF871YZO, ENCFF931AAW 958539878 ENCODE Processing Pipeline ec081f4605854d89188583e74cbfabcc https://www.encodeproject.org/files/ENCFF793KPD/@@download/ENCFF793KPD.bigWig hg19 archived low read length, low read depth ENCFF176OXM bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF871YZO 387223222 ENCODE Processing Pipeline 384145301f7b603a2ade7108a3067b2a https://www.encodeproject.org/files/ENCFF176OXM/@@download/ENCFF176OXM.bigWig hg19 released low read length, low read depth ENCFF642XZH bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 426707149 ENCODE Processing Pipeline 2258e00686bd6701a90dcf836d275861 https://www.encodeproject.org/files/ENCFF642XZH/@@download/ENCFF642XZH.bigWig hg19 archived low read length, low read depth ENCFF300UHW bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF863VMN, ENCFF871YZO, ENCFF931AAW 935327181 ENCODE Processing Pipeline 73ef688967cdd1aaadfbff3ddf527a3c https://www.encodeproject.org/files/ENCFF300UHW/@@download/ENCFF300UHW.bigWig hg19 archived low read length, low read depth ENCFF051FVN bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817NEK, ENCFF863VMN, ENCFF871YZO, ENCFF931AAW 6253882 ENCODE Processing Pipeline adb33a9bc645c24f01eef16b198dd6d9 https://www.encodeproject.org/files/ENCFF051FVN/@@download/ENCFF051FVN.bed.gz hg19 archived low read length, low read depth ENCFF268QCJ bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF766CME 10847081 ENCODE Processing Pipeline 612f9a3bb1bc006917382307e22e8b11 https://www.encodeproject.org/files/ENCFF268QCJ/@@download/ENCFF268QCJ.bigBed hg19 archived low read length, low read depth ENCFF676HIP bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 4862542 ENCODE Processing Pipeline 50eaf73fab5cf429f4c0f9625aef3717 https://www.encodeproject.org/files/ENCFF676HIP/@@download/ENCFF676HIP.bed.gz hg19 archived low read length, low read depth ENCFF766CME bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF871YZO 4504257 ENCODE Processing Pipeline d857c14b63ab37c7c550af1f62447f60 https://www.encodeproject.org/files/ENCFF766CME/@@download/ENCFF766CME.bed.gz hg19 archived low read length, low read depth ENCFF091RAT bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051FVN 13502321 ENCODE Processing Pipeline 3366d7789c9b0d5eb688915dda25de77 https://www.encodeproject.org/files/ENCFF091RAT/@@download/ENCFF091RAT.bigBed hg19 archived low read length, low read depth ENCFF943OVN bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF676HIP 11084605 ENCODE Processing Pipeline ddb81c8951475b3a1589d1c1162059d2 https://www.encodeproject.org/files/ENCFF943OVN/@@download/ENCFF943OVN.bigBed hg19 archived low read length, low read depth ENCFF926YYO bam unfiltered alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDS, ENCFF643CGH 1083841103 ENCODE Processing Pipeline 472cc4b193a43bd56eda75cca1e3bcd1 https://www.encodeproject.org/files/ENCFF926YYO/@@download/ENCFF926YYO.bam GRCh38 released low read length, low read depth ENCFF215EOS bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDS, ENCFF643CGH 757371324 ENCODE Processing Pipeline 80d3b346dae6fe36b7e3fb2a2378f620 https://www.encodeproject.org/files/ENCFF215EOS/@@download/ENCFF215EOS.bam GRCh38 released low read length, low read depth ENCFF465MCM bam unfiltered alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDN, ENCFF643CGH 1053108974 ENCODE Processing Pipeline cf899e91c0f54f54066d94d556c4890e https://www.encodeproject.org/files/ENCFF465MCM/@@download/ENCFF465MCM.bam GRCh38 released low read length, low read depth ENCFF242BHJ bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDN, ENCFF643CGH 720254621 ENCODE Processing Pipeline 4e6bab85ac2de194c7129fcd99d92580 https://www.encodeproject.org/files/ENCFF242BHJ/@@download/ENCFF242BHJ.bam GRCh38 released low read length, low read depth ENCFF460WNC bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF242BHJ, ENCFF511RLN 500179371 ENCODE Processing Pipeline b6eb34f1a74c4e9b545e3f18d722d736 https://www.encodeproject.org/files/ENCFF460WNC/@@download/ENCFF460WNC.bigWig GRCh38 released low read length, low read depth ENCFF578KSA bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF215EOS, ENCFF536CTV 615663638 ENCODE Processing Pipeline 2092574cf493815745072875ad237b74 https://www.encodeproject.org/files/ENCFF578KSA/@@download/ENCFF578KSA.bigWig GRCh38 released low read length, low read depth ENCFF770THS bigWig signal p-value ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF215EOS, ENCFF242BHJ, ENCFF511RLN, ENCFF536CTV 884453987 ENCODE Processing Pipeline b78b810717803b2eb5ba13f3764097f0 https://www.encodeproject.org/files/ENCFF770THS/@@download/ENCFF770THS.bigWig GRCh38 released low read length, low read depth ENCFF339ANQ bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF242BHJ, ENCFF511RLN 390705342 ENCODE Processing Pipeline c3d5c0aceb71bae58dec2b1effb2c18a https://www.encodeproject.org/files/ENCFF339ANQ/@@download/ENCFF339ANQ.bigWig GRCh38 released low read length, low read depth ENCFF201LEB bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF215EOS, ENCFF536CTV 423635907 ENCODE Processing Pipeline 2101aaf833ec846dec5d99efc157cdc5 https://www.encodeproject.org/files/ENCFF201LEB/@@download/ENCFF201LEB.bigWig GRCh38 released low read length, low read depth ENCFF719YDE bigWig fold change over control ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF215EOS, ENCFF242BHJ, ENCFF511RLN, ENCFF536CTV 927496042 ENCODE Processing Pipeline 21623dcba8470c8adf92fd8e88c822b3 https://www.encodeproject.org/files/ENCFF719YDE/@@download/ENCFF719YDE.bigWig GRCh38 released low read length, low read depth ENCFF601CKR bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF215EOS, ENCFF536CTV 4650071 ENCODE Processing Pipeline be837cf5c1f41041d5654133ba01b43b https://www.encodeproject.org/files/ENCFF601CKR/@@download/ENCFF601CKR.bed.gz GRCh38 released low read length, low read depth ENCFF197FPN bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF601CKR 10928166 ENCODE Processing Pipeline 8e26903cdf9228a3a5c1fb0897a3d901 https://www.encodeproject.org/files/ENCFF197FPN/@@download/ENCFF197FPN.bigBed GRCh38 released low read length, low read depth ENCFF821TUT bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF242BHJ, ENCFF511RLN 4508192 ENCODE Processing Pipeline f2e03243a106432a0d77293f0872aab0 https://www.encodeproject.org/files/ENCFF821TUT/@@download/ENCFF821TUT.bed.gz GRCh38 released low read length, low read depth ENCFF835CGH bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF215EOS, ENCFF242BHJ, ENCFF511RLN, ENCFF536CTV 5998609 ENCODE Processing Pipeline 195022f007c9acb81cf75c611578493b https://www.encodeproject.org/files/ENCFF835CGH/@@download/ENCFF835CGH.bed.gz GRCh38 released low read length, low read depth ENCFF123RHO bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF821TUT 10841077 ENCODE Processing Pipeline 7b86cf6c5efc07479a6943c0241c5295 https://www.encodeproject.org/files/ENCFF123RHO/@@download/ENCFF123RHO.bigBed GRCh38 released low read length, low read depth ENCFF082MZE bigBed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF835CGH 11320469 ENCODE Processing Pipeline ae715f075d25f9051e7f1a2bd25d2968 https://www.encodeproject.org/files/ENCFF082MZE/@@download/ENCFF082MZE.bigBed GRCh38 released low read length, low read depth ENCFF587OGF bigBed narrowPeak conservative idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF838QKQ 213360 ENCODE Processing Pipeline d7c36c6e629af1fcb41899b16c120a0a https://www.encodeproject.org/files/ENCFF587OGF/@@download/ENCFF587OGF.bigBed GRCh38 released low read length, low read depth ENCFF828GTN bigBed narrowPeak optimal idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF485SRU 233902 ENCODE Processing Pipeline dd983aa91d58577102e7184b5763e075 https://www.encodeproject.org/files/ENCFF828GTN/@@download/ENCFF828GTN.bigBed GRCh38 released low read length, low read depth ENCFF838QKQ bed narrowPeak conservative idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF601CKR, ENCFF821TUT, ENCFF835CGH 94994 ENCODE Processing Pipeline ec621c4815dbe5b77089f141e3252369 https://www.encodeproject.org/files/ENCFF838QKQ/@@download/ENCFF838QKQ.bed.gz GRCh38 released low read length, low read depth ENCFF485SRU bed narrowPeak optimal idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF601CKR, ENCFF821TUT, ENCFF835CGH 110183 ENCODE Processing Pipeline 04188cc4790c88fc6367dc693f6dd579 https://www.encodeproject.org/files/ENCFF485SRU/@@download/ENCFF485SRU.bed.gz GRCh38 released low read length, low read depth ENCFF294ZUH bed narrowPeak conservative idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF051FVN, ENCFF676HIP, ENCFF766CME 88009 ENCODE Processing Pipeline 28608b07ef4204c3b4b2ffafa8cc4bb7 https://www.encodeproject.org/files/ENCFF294ZUH/@@download/ENCFF294ZUH.bed.gz hg19 archived low read length, low read depth ENCFF366HXK bigBed narrowPeak conservative idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF294ZUH 203151 ENCODE Processing Pipeline cde8f1b647f32d22408a69a44432892d https://www.encodeproject.org/files/ENCFF366HXK/@@download/ENCFF366HXK.bigBed hg19 archived low read length, low read depth ENCFF712YRN bed narrowPeak optimal idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF051FVN, ENCFF676HIP, ENCFF766CME 100682 ENCODE Processing Pipeline f8023ab6ff76251a27263977e1fd3d00 https://www.encodeproject.org/files/ENCFF712YRN/@@download/ENCFF712YRN.bed.gz hg19 archived low read length, low read depth ENCFF333SNY bigBed narrowPeak optimal idr thresholded peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF712YRN 220267 ENCODE Processing Pipeline 2ad71a8300e44cf50e8901b7f21b6055 https://www.encodeproject.org/files/ENCFF333SNY/@@download/ENCFF333SNY.bigBed hg19 archived low read length, low read depth ENCFF174GER fastq reads ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF071CTT 2338360414 Michael Snyder, Stanford bf41e7ed69ac337ec86e4dfab73a53a6 SRA:SRR6213099 https://www.encodeproject.org/files/ENCFF174GER/@@download/ENCFF174GER.fastq.gz Illumina HiSeq 4000 /files/ENCFF991CCC/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF071CTT fastq reads ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF174GER 2718406768 Michael Snyder, Stanford d19cc11c0462f1ceb9752327ab9032d9 SRA:SRR6213099 https://www.encodeproject.org/files/ENCFF071CTT/@@download/ENCFF071CTT.fastq.gz Illumina HiSeq 4000 /files/ENCFF236USK/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF866SGP bam unfiltered alignments ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF071CTT, ENCFF174GER, ENCFF807MUK 5014953438 ENCODE Processing Pipeline 2a548f4a4a6b76ad116d594ada2eb1b1 https://www.encodeproject.org/files/ENCFF866SGP/@@download/ENCFF866SGP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF394VHK bam alignments ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF071CTT, ENCFF174GER, ENCFF807MUK 3710557243 ENCODE Processing Pipeline 073f7f5c158ca5f6b2a4e76ec4fbc3b5 https://www.encodeproject.org/files/ENCFF394VHK/@@download/ENCFF394VHK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF081JPX bam unfiltered alignments ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF071CTT, ENCFF174GER, ENCFF643CGH 5023978555 ENCODE Processing Pipeline 9ab30c3f9baf1976740743678e98b5aa https://www.encodeproject.org/files/ENCFF081JPX/@@download/ENCFF081JPX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF479TYA bam alignments ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF071CTT, ENCFF174GER, ENCFF643CGH 3715037891 ENCODE Processing Pipeline 4c50417cb58059097f7c297a3bcfeebc https://www.encodeproject.org/files/ENCFF479TYA/@@download/ENCFF479TYA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF016UGO bigWig signal p-value ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF394VHK, ENCFF571CAV 1420896414 ENCODE Processing Pipeline a69578d9e2e3ab7dfd9d4e0e715c1d8e https://www.encodeproject.org/files/ENCFF016UGO/@@download/ENCFF016UGO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF380ZRN bigWig fold change over control ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF394VHK, ENCFF571CAV 1376514042 ENCODE Processing Pipeline e58e7aa08f89935d0aa0ba798389dd8c https://www.encodeproject.org/files/ENCFF380ZRN/@@download/ENCFF380ZRN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF562JYJ bigBed narrowPeak peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF279FQM 13409564 ENCODE Processing Pipeline f68507769419f9828c7d59160507be05 https://www.encodeproject.org/files/ENCFF562JYJ/@@download/ENCFF562JYJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF379TEL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF279FQM 596375 ENCODE Processing Pipeline 392b174f4bd0d02611ab6508f6334950 https://www.encodeproject.org/files/ENCFF379TEL/@@download/ENCFF379TEL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF279FQM bed narrowPeak peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF394VHK, ENCFF571CAV 6819143 ENCODE Processing Pipeline 3fca8755f62a14ee7b35c723276c3ac5 https://www.encodeproject.org/files/ENCFF279FQM/@@download/ENCFF279FQM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF043VGB bigWig signal p-value ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF097VOB, ENCFF479TYA 1425307832 ENCODE Processing Pipeline 79e5564b2c9a9ad264c20abeecbf95a6 https://www.encodeproject.org/files/ENCFF043VGB/@@download/ENCFF043VGB.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF930ARO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF379TEL 1338821 ENCODE Processing Pipeline b594b02f90301af6f82c2ce71fe72bdc https://www.encodeproject.org/files/ENCFF930ARO/@@download/ENCFF930ARO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF072BII bigWig fold change over control ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF097VOB, ENCFF479TYA 1402816764 ENCODE Processing Pipeline a2fd5ee6947ca2bd1f6b739c6d69d8e6 https://www.encodeproject.org/files/ENCFF072BII/@@download/ENCFF072BII.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF803ALG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF113NNM 1331741 ENCODE Processing Pipeline d361ed03d69b413da9bd8f6a9c6762ed https://www.encodeproject.org/files/ENCFF803ALG/@@download/ENCFF803ALG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF035MJS bed narrowPeak peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF097VOB, ENCFF479TYA 6841705 ENCODE Processing Pipeline e5ae63bd96d14578ccfc37f51b37ff32 https://www.encodeproject.org/files/ENCFF035MJS/@@download/ENCFF035MJS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF195YYJ bigBed narrowPeak peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF035MJS 13452485 ENCODE Processing Pipeline 25e814c465e39457e0bb46d97f0734f2 https://www.encodeproject.org/files/ENCFF195YYJ/@@download/ENCFF195YYJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF113NNM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF035MJS, ENCFF419RSJ 589786 ENCODE Processing Pipeline 3c4f1ad3c7d1809d07ef40de155dee92 https://www.encodeproject.org/files/ENCFF113NNM/@@download/ENCFF113NNM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF724RNY fastq reads ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF922ULN 1832155512 Michael Snyder, Stanford ff60b774d11299a4087d3740570a7c99 SRA:SRR6213498 https://www.encodeproject.org/files/ENCFF724RNY/@@download/ENCFF724RNY.fastq.gz Illumina HiSeq 4000 /files/ENCFF914YKE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF922ULN fastq reads ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF724RNY 2133619149 Michael Snyder, Stanford 758748daa5688ac072e6a58a997a5a3b SRA:SRR6213498 https://www.encodeproject.org/files/ENCFF922ULN/@@download/ENCFF922ULN.fastq.gz Illumina HiSeq 4000 /files/ENCFF592WLT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF099PGD fastq reads ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF404VFO 1215448713 Michael Snyder, Stanford 076f19d6be25ca2528885ef3079c15a9 SRA:SRR6213499 https://www.encodeproject.org/files/ENCFF099PGD/@@download/ENCFF099PGD.fastq.gz Illumina HiSeq 4000 /files/ENCFF914YKE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF404VFO fastq reads ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF099PGD 1485588381 Michael Snyder, Stanford ac4c7054a70379765f2d3c6933c323b3 SRA:SRR6213499 https://www.encodeproject.org/files/ENCFF404VFO/@@download/ENCFF404VFO.fastq.gz Illumina HiSeq 4000 /files/ENCFF592WLT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF030MFB bam unfiltered alignments ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 100 ENCFF099PGD, ENCFF404VFO, ENCFF643CGH, ENCFF724RNY, ENCFF922ULN 5840401759 ENCODE Processing Pipeline 3a0d0e5585cac73c91bde79f23999a8e https://www.encodeproject.org/files/ENCFF030MFB/@@download/ENCFF030MFB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF827XZB bam alignments ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 100 ENCFF099PGD, ENCFF404VFO, ENCFF643CGH, ENCFF724RNY, ENCFF922ULN 3355818484 ENCODE Processing Pipeline 158499ce301f758f3fbc00e43d6ca885 https://www.encodeproject.org/files/ENCFF827XZB/@@download/ENCFF827XZB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF859ZVX bam unfiltered alignments ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 100 ENCFF099PGD, ENCFF404VFO, ENCFF724RNY, ENCFF807MUK, ENCFF922ULN 5840590999 ENCODE Processing Pipeline fc49944476becc7e102d7cbffbad8f6a https://www.encodeproject.org/files/ENCFF859ZVX/@@download/ENCFF859ZVX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF386INF bam alignments ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 100 ENCFF099PGD, ENCFF404VFO, ENCFF724RNY, ENCFF807MUK, ENCFF922ULN 3353162817 ENCODE Processing Pipeline 3fa8aaa9bed1d14ca9d235f8a1af0876 https://www.encodeproject.org/files/ENCFF386INF/@@download/ENCFF386INF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF120OFY bigWig signal p-value ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF386INF, ENCFF629CBG 914542448 ENCODE Processing Pipeline dd5290514b27cb69948be6e3724095bb https://www.encodeproject.org/files/ENCFF120OFY/@@download/ENCFF120OFY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF304EAV bigBed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF294TXO 11553986 ENCODE Processing Pipeline 4c4f615056d670b01989d7eb591922f7 https://www.encodeproject.org/files/ENCFF304EAV/@@download/ENCFF304EAV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF435EDS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF294TXO 574385 ENCODE Processing Pipeline efb628c836df34c3be5196192b76c4f2 https://www.encodeproject.org/files/ENCFF435EDS/@@download/ENCFF435EDS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF600DCQ bigWig fold change over control ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF386INF, ENCFF629CBG 1084749697 ENCODE Processing Pipeline bc4c2dda605d32e5ec64e5cafb378cdc https://www.encodeproject.org/files/ENCFF600DCQ/@@download/ENCFF600DCQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF846QEI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF435EDS 1028331 ENCODE Processing Pipeline d6ff56f737f50ae61ae37c5813804711 https://www.encodeproject.org/files/ENCFF846QEI/@@download/ENCFF846QEI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF294TXO bed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF386INF, ENCFF629CBG 6152257 ENCODE Processing Pipeline 3c3f3728aaf8c7ab0d4e3aa350b057dd https://www.encodeproject.org/files/ENCFF294TXO/@@download/ENCFF294TXO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF901QVS bigWig signal p-value ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF288VXA, ENCFF827XZB 904796739 ENCODE Processing Pipeline 15f00a22d36980e7e2a7602111f57f22 https://www.encodeproject.org/files/ENCFF901QVS/@@download/ENCFF901QVS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF754CTN bigWig fold change over control ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF288VXA, ENCFF827XZB 1093382227 ENCODE Processing Pipeline ad3fbf7f66bb280e6ead4b4372176106 https://www.encodeproject.org/files/ENCFF754CTN/@@download/ENCFF754CTN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF577LSV bed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF288VXA, ENCFF827XZB 6212368 ENCODE Processing Pipeline 8ac5e3a7df050fae8623476dd340c60a https://www.encodeproject.org/files/ENCFF577LSV/@@download/ENCFF577LSV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF396VZU bigBed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF577LSV 11639283 ENCODE Processing Pipeline 65fc94d5dc63369b12921d0c63cf5d6b https://www.encodeproject.org/files/ENCFF396VZU/@@download/ENCFF396VZU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF897UFD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF419RSJ, ENCFF577LSV 595143 ENCODE Processing Pipeline 6af4db010840ed4cec4fd6a40ba85a62 https://www.encodeproject.org/files/ENCFF897UFD/@@download/ENCFF897UFD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF141KNK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF897UFD 1061644 ENCODE Processing Pipeline a2e826903b0b85e33aba3252cadc8a3f https://www.encodeproject.org/files/ENCFF141KNK/@@download/ENCFF141KNK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF943KNW fastq reads ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF509ERN 2502690037 Michael Snyder, Stanford 569e9cfcb5ea7ed5b9a9643caa3bfa04 SRA:SRR6213255 https://www.encodeproject.org/files/ENCFF943KNW/@@download/ENCFF943KNW.fastq.gz Illumina HiSeq 4000 /files/ENCFF913JQM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF509ERN fastq reads ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF943KNW 2787147905 Michael Snyder, Stanford 6490b1128093799202ac0f59ba297d47 SRA:SRR6213255 https://www.encodeproject.org/files/ENCFF509ERN/@@download/ENCFF509ERN.fastq.gz Illumina HiSeq 4000 /files/ENCFF024VTZ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF646MZX bam alignments ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF509ERN, ENCFF643CGH, ENCFF943KNW 2900266140 ENCODE Processing Pipeline 59b8989d5589882c65f0234272cca32a https://www.encodeproject.org/files/ENCFF646MZX/@@download/ENCFF646MZX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF093QEO bam unfiltered alignments ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF509ERN, ENCFF807MUK, ENCFF943KNW 4940342343 ENCODE Processing Pipeline 56526b3d95b9f7c4394b00ee6c999563 https://www.encodeproject.org/files/ENCFF093QEO/@@download/ENCFF093QEO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF269VBN bam unfiltered alignments ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF509ERN, ENCFF643CGH, ENCFF943KNW 4943485164 ENCODE Processing Pipeline 4a82f43ee92e033f131f8b6151716298 https://www.encodeproject.org/files/ENCFF269VBN/@@download/ENCFF269VBN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF171WZW bam alignments ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF509ERN, ENCFF807MUK, ENCFF943KNW 2895577346 ENCODE Processing Pipeline ece4e2b736fa8c72e6a7ac8b1bebd56d https://www.encodeproject.org/files/ENCFF171WZW/@@download/ENCFF171WZW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF844HAN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF864HFH 217726 ENCODE Processing Pipeline 0a2ca1bdd932afcc0280a3032666b040 https://www.encodeproject.org/files/ENCFF844HAN/@@download/ENCFF844HAN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF018MKQ bigBed narrowPeak peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF864HFH 11557579 ENCODE Processing Pipeline a30ff243355704e5892a2445d3c92573 https://www.encodeproject.org/files/ENCFF018MKQ/@@download/ENCFF018MKQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF264WPG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF844HAN 448471 ENCODE Processing Pipeline ff15bc4b54cf9b5c4295896a6d02fcbf https://www.encodeproject.org/files/ENCFF264WPG/@@download/ENCFF264WPG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF677UNH bigWig signal p-value ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF171WZW, ENCFF460MTF 1359609115 ENCODE Processing Pipeline d7f041099ee8d72a53920cd310745282 https://www.encodeproject.org/files/ENCFF677UNH/@@download/ENCFF677UNH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF864HFH bed narrowPeak peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF171WZW, ENCFF460MTF 6209418 ENCODE Processing Pipeline 9634de85e08081425e44f097fff502db https://www.encodeproject.org/files/ENCFF864HFH/@@download/ENCFF864HFH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF271VSZ bigWig signal p-value ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF646MZX, ENCFF978YES 1382934238 ENCODE Processing Pipeline 090434034b613853f45f55ed9c28e7ae https://www.encodeproject.org/files/ENCFF271VSZ/@@download/ENCFF271VSZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF928ZSB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF954XKP 208069 ENCODE Processing Pipeline a35756607542a04e794f2c2773f75db4 https://www.encodeproject.org/files/ENCFF928ZSB/@@download/ENCFF928ZSB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF539GCZ bigWig fold change over control ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF171WZW, ENCFF460MTF 1467278705 ENCODE Processing Pipeline b8b0df1104da99c09e3dd686ad83e0f5 https://www.encodeproject.org/files/ENCFF539GCZ/@@download/ENCFF539GCZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF954XKP bed narrowPeak peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF646MZX, ENCFF978YES 6188073 ENCODE Processing Pipeline 09d8f2ed986a9260a52203e5e477db9a https://www.encodeproject.org/files/ENCFF954XKP/@@download/ENCFF954XKP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF133AZE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF928ZSB 436133 ENCODE Processing Pipeline 7c5131b06eb8437b984a78ac292927d4 https://www.encodeproject.org/files/ENCFF133AZE/@@download/ENCFF133AZE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF127POB bigWig fold change over control ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF646MZX, ENCFF978YES 1486916010 ENCODE Processing Pipeline c9e0aa6de67c3ea92c9873f26849b2ae https://www.encodeproject.org/files/ENCFF127POB/@@download/ENCFF127POB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF199NCJ bigBed narrowPeak peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF954XKP 11549578 ENCODE Processing Pipeline 807550626aa6085ef2c8e13883ad98eb https://www.encodeproject.org/files/ENCFF199NCJ/@@download/ENCFF199NCJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF029YQO fastq reads ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 1 25 paired-ended 2 ENCFF036XWQ 422019626 Bradley Bernstein, Broad c3af4095a657b61ae065041f86d86dc5 https://www.encodeproject.org/files/ENCFF029YQO/@@download/ENCFF029YQO.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF036XWQ fastq reads ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 1 36 paired-ended 1 ENCFF029YQO 534817029 Bradley Bernstein, Broad 999bec6a39bfd02cd6b45003afc9bb5d https://www.encodeproject.org/files/ENCFF036XWQ/@@download/ENCFF036XWQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF540AUD fastq reads ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 1 36 paired-ended 1 ENCFF925CRS 530148068 Bradley Bernstein, Broad 8bd0739f325e85e8c3051a4721530d44 https://www.encodeproject.org/files/ENCFF540AUD/@@download/ENCFF540AUD.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released borderline replicate concordance, low read length, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption mismatched status, experiment not submitted to GEO ENCFF925CRS fastq reads ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 1 25 paired-ended 2 ENCFF540AUD 428023084 Bradley Bernstein, Broad 59116968603cf64c78d5413fbefb9f42 https://www.encodeproject.org/files/ENCFF925CRS/@@download/ENCFF925CRS.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF803CCM bam unfiltered alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 36 ENCFF036XWQ, ENCFF807MUK 789353208 ENCODE Processing Pipeline 92f4af1bc40b16b795973fc75fadfa08 https://www.encodeproject.org/files/ENCFF803CCM/@@download/ENCFF803CCM.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF570CDK bam unfiltered alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 36 ENCFF540AUD, ENCFF807MUK 795393773 ENCODE Processing Pipeline daa386aade7d44bf6f181e03999e891f https://www.encodeproject.org/files/ENCFF570CDK/@@download/ENCFF570CDK.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF036MJJ bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 36 ENCFF540AUD, ENCFF807MUK 544447933 ENCODE Processing Pipeline f25c8b78b0f6b87a9471194e6752b631 https://www.encodeproject.org/files/ENCFF036MJJ/@@download/ENCFF036MJJ.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF205MUK bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 36 ENCFF036XWQ, ENCFF807MUK 533297632 ENCODE Processing Pipeline b20066159c96bb14d9cac1403238cc37 https://www.encodeproject.org/files/ENCFF205MUK/@@download/ENCFF205MUK.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF531RJB bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 36 ENCFF036XWQ, ENCFF643CGH 533040960 ENCODE Processing Pipeline 2678b8b786eda81f8fbf29639c5520d8 https://www.encodeproject.org/files/ENCFF531RJB/@@download/ENCFF531RJB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF243ARI bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 36 ENCFF540AUD, ENCFF643CGH 544269811 ENCODE Processing Pipeline 223b5d2fd04a216d1fb715d1b5b1d127 https://www.encodeproject.org/files/ENCFF243ARI/@@download/ENCFF243ARI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF934DPB bam unfiltered alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 36 ENCFF540AUD, ENCFF643CGH 799779224 ENCODE Processing Pipeline a3bdae8d44afb4a6a4812ff79aafa032 https://www.encodeproject.org/files/ENCFF934DPB/@@download/ENCFF934DPB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF065IKG bam unfiltered alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 36 ENCFF036XWQ, ENCFF643CGH 794136652 ENCODE Processing Pipeline b834f8a399d7d0a78f51a72abfa32f16 https://www.encodeproject.org/files/ENCFF065IKG/@@download/ENCFF065IKG.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF471GYI bigWig signal p-value ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF036MJJ, ENCFF165PBN, ENCFF705NOL 1169626041 ENCODE Processing Pipeline 73cc673f7d61b83b08914fc0d8c84fa4 https://www.encodeproject.org/files/ENCFF471GYI/@@download/ENCFF471GYI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF620XQZ bigWig fold change over control ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 926020438 ENCODE Processing Pipeline df94fce32470fa55066cb7101ab4a9cb https://www.encodeproject.org/files/ENCFF620XQZ/@@download/ENCFF620XQZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF538CUR bigWig fold change over control ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF036MJJ, ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 1172766320 ENCODE Processing Pipeline c11a7624f98e45b82076d7531a4aa588 https://www.encodeproject.org/files/ENCFF538CUR/@@download/ENCFF538CUR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF235LYZ bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF036MJJ, ENCFF165PBN, ENCFF705NOL 6754794 ENCODE Processing Pipeline b59ff383dd10cdb514272db7821d927a https://www.encodeproject.org/files/ENCFF235LYZ/@@download/ENCFF235LYZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF205YEO bigBed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF641ZKN 12936904 ENCODE Processing Pipeline 07923e0e20b67005bcd6b84a0ee88779 https://www.encodeproject.org/files/ENCFF205YEO/@@download/ENCFF205YEO.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF766UAV bigWig fold change over control ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF036MJJ, ENCFF165PBN, ENCFF705NOL 795101919 ENCODE Processing Pipeline e9c550e32eee704c1dde34eef057a9a4 https://www.encodeproject.org/files/ENCFF766UAV/@@download/ENCFF766UAV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF452EDL bigWig signal p-value ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 1041306278 ENCODE Processing Pipeline 002e8e50a57acfa00f80ef75992bc231 https://www.encodeproject.org/files/ENCFF452EDL/@@download/ENCFF452EDL.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF694VOI bigWig signal p-value ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF036MJJ, ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 1208294907 ENCODE Processing Pipeline 124536364cb3db8e49d65fe4062fc319 https://www.encodeproject.org/files/ENCFF694VOI/@@download/ENCFF694VOI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF641ZKN bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF036MJJ, ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 7127632 ENCODE Processing Pipeline 554208da20329b90c0b31a2121732cae https://www.encodeproject.org/files/ENCFF641ZKN/@@download/ENCFF641ZKN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF326NFT bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 6720130 ENCODE Processing Pipeline 9330a4a4a265ce2287ca3693e267f4f7 https://www.encodeproject.org/files/ENCFF326NFT/@@download/ENCFF326NFT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF912SVU bigBed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF235LYZ 13051468 ENCODE Processing Pipeline 7fd277ab41976327d391d76779f05385 https://www.encodeproject.org/files/ENCFF912SVU/@@download/ENCFF912SVU.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF424OHJ bigBed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF326NFT 13056506 ENCODE Processing Pipeline 1744799eee460c63f8911360b3fb1cae https://www.encodeproject.org/files/ENCFF424OHJ/@@download/ENCFF424OHJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF234MZM bed narrowPeak conservative idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF235LYZ, ENCFF326NFT, ENCFF641ZKN 127340 ENCODE Processing Pipeline 3e1bd8c455e79dfc9f151000003cb192 https://www.encodeproject.org/files/ENCFF234MZM/@@download/ENCFF234MZM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF609YST bed narrowPeak optimal idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF001TDO, ENCFF235LYZ, ENCFF326NFT, ENCFF641ZKN 213107 ENCODE Processing Pipeline 406c5218653fd7558c5581de373c2041 https://www.encodeproject.org/files/ENCFF609YST/@@download/ENCFF609YST.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF759WHL bigBed narrowPeak conservative idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF234MZM 334248 ENCODE Processing Pipeline 2b3aaa554de5d74ce0a288836372fe7a https://www.encodeproject.org/files/ENCFF759WHL/@@download/ENCFF759WHL.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF469KUF bigBed narrowPeak optimal idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF609YST 480184 ENCODE Processing Pipeline 67f2be0108a52eead3b41f7ce537ecd8 https://www.encodeproject.org/files/ENCFF469KUF/@@download/ENCFF469KUF.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF133GIM bed narrowPeak conservative idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF347HFV, ENCFF419RSJ, ENCFF517YCU, ENCFF944BPH 123923 ENCODE Processing Pipeline dda6393a8d0afcea52a46d9799dda731 https://www.encodeproject.org/files/ENCFF133GIM/@@download/ENCFF133GIM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF920OQP bigWig fold change over control ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF243ARI, ENCFF645CCA, ENCFF943MYJ 775024335 ENCODE Processing Pipeline 2ef40e348cf0397be0838097834ad882 https://www.encodeproject.org/files/ENCFF920OQP/@@download/ENCFF920OQP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF503MYJ bigWig signal p-value ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF243ARI, ENCFF531RJB, ENCFF645CCA, ENCFF943MYJ 1284788114 ENCODE Processing Pipeline 96dbf4bbcf6ff0c9ec43efb637e977c7 https://www.encodeproject.org/files/ENCFF503MYJ/@@download/ENCFF503MYJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF721UEZ bigWig fold change over control ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF531RJB, ENCFF645CCA, ENCFF943MYJ 925900785 ENCODE Processing Pipeline 066450d085639e42d60523a136e25d5c https://www.encodeproject.org/files/ENCFF721UEZ/@@download/ENCFF721UEZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF944BPH bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF243ARI, ENCFF645CCA, ENCFF943MYJ 6712608 ENCODE Processing Pipeline dfe052377cb44047e81afddb802fd609 https://www.encodeproject.org/files/ENCFF944BPH/@@download/ENCFF944BPH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF517YCU bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF531RJB, ENCFF645CCA, ENCFF943MYJ 6618066 ENCODE Processing Pipeline 837de3afd58477fd286628df6d6c7aab https://www.encodeproject.org/files/ENCFF517YCU/@@download/ENCFF517YCU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF169HZN bigWig fold change over control ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF243ARI, ENCFF531RJB, ENCFF645CCA, ENCFF943MYJ 1166837624 ENCODE Processing Pipeline 4dea9d0e5573363ea147f71e88aa3815 https://www.encodeproject.org/files/ENCFF169HZN/@@download/ENCFF169HZN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF413RQL bed narrowPeak optimal idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF347HFV, ENCFF419RSJ, ENCFF517YCU, ENCFF944BPH 201283 ENCODE Processing Pipeline eff3fc074577b4f7511daf8b8f153022 https://www.encodeproject.org/files/ENCFF413RQL/@@download/ENCFF413RQL.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF159RWJ bigBed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF944BPH 13039819 ENCODE Processing Pipeline c71a96a1ce3c909360d4169ddb5e0232 https://www.encodeproject.org/files/ENCFF159RWJ/@@download/ENCFF159RWJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF540FXA bigBed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF347HFV 12967851 ENCODE Processing Pipeline 5b50052330848474ffac2c20e4feb5ef https://www.encodeproject.org/files/ENCFF540FXA/@@download/ENCFF540FXA.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF965EXO bigWig signal p-value ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF243ARI, ENCFF645CCA, ENCFF943MYJ 1083755950 ENCODE Processing Pipeline 851c6f81711df1e01c7e965879b96b45 https://www.encodeproject.org/files/ENCFF965EXO/@@download/ENCFF965EXO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF541VLK bigWig signal p-value ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF531RJB, ENCFF645CCA, ENCFF943MYJ 1022030652 ENCODE Processing Pipeline a7fd2794306ebc30a22caed804573545 https://www.encodeproject.org/files/ENCFF541VLK/@@download/ENCFF541VLK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF347HFV bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF243ARI, ENCFF531RJB, ENCFF645CCA, ENCFF943MYJ 7133566 ENCODE Processing Pipeline 2fd7eb8007d51ee397f1b16ccd4ab995 https://www.encodeproject.org/files/ENCFF347HFV/@@download/ENCFF347HFV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF698CIL bigBed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF517YCU 13172278 ENCODE Processing Pipeline 56af2822be134bea3e1f650ce02a45ee https://www.encodeproject.org/files/ENCFF698CIL/@@download/ENCFF698CIL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF726YEQ bigBed narrowPeak conservative idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF133GIM 331027 ENCODE Processing Pipeline b180f463ee22336bae489939ed271d99 https://www.encodeproject.org/files/ENCFF726YEQ/@@download/ENCFF726YEQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF957LEV bigBed narrowPeak optimal idr thresholded peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1, 2 ENCFF413RQL 463383 ENCODE Processing Pipeline 955bed3b15655eac2e108913bb2afff4 https://www.encodeproject.org/files/ENCFF957LEV/@@download/ENCFF957LEV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF000ZGP bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 1 488547411 Kevin Struhl, HMS aee81e7d89f049d44fc344b8b1b7b496 https://www.encodeproject.org/files/ENCFF000ZGP/@@download/ENCFF000ZGP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review, missing derived_from missing control alignments ENCFF000ZGQ bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPU 6918118 Kevin Struhl, HMS eac5a3fc60441266324d3ee67f007894 https://www.encodeproject.org/files/ENCFF000ZGQ/@@download/ENCFF000ZGQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF000ZGR fastq reads ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 939106505 Kevin Struhl, HMS 35f031be36006f41b76f57a10bd5f2f6 https://www.encodeproject.org/files/ENCFF000ZGR/@@download/ENCFF000ZGR.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF000ZGT fastq reads ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1193382553 Kevin Struhl, HMS 4b6e2cf3cc47d11d765d5de309d6bab3 https://www.encodeproject.org/files/ENCFF000ZGT/@@download/ENCFF000ZGT.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF000ZGV bigWig signal ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 404536218 Kevin Struhl, HMS c8f8feedb7c42f071d2bed1c727d90c7 https://www.encodeproject.org/files/ENCFF000ZGV/@@download/ENCFF000ZGV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review, missing derived_from missing control alignments ENCFF000ZGW bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 1 645503079 Kevin Struhl, HMS c6862ed7d243aa368f5e4b23be0191d4 https://www.encodeproject.org/files/ENCFF000ZGW/@@download/ENCFF000ZGW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF001VPU bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2644832 Kevin Struhl, HMS d5ff398f8f287eb419e135d7d4d9f728 https://www.encodeproject.org/files/ENCFF001VPU/@@download/ENCFF001VPU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF002CYY bed narrowPeak optimal idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1357216 ENCODE Consortium Analysis Working Group 948a3af044b38668cd14d1fa16954823 https://www.encodeproject.org/files/ENCFF002CYY/@@download/ENCFF002CYY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review, missing derived_from missing control alignments ENCFF962QVL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYY 2753577 ENCODE Consortium 0b95e919f1a4364fd8e784366cbd4a6a https://www.encodeproject.org/files/ENCFF962QVL/@@download/ENCFF962QVL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF822ESO bam unfiltered alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGR, ENCFF643CGH 998290796 ENCODE Processing Pipeline 8ad08abb6e347ada01ee1b71037648e1 https://www.encodeproject.org/files/ENCFF822ESO/@@download/ENCFF822ESO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF014BMO bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGR, ENCFF643CGH 597271965 ENCODE Processing Pipeline a6a7167b5352712f052efe8dfac9638d https://www.encodeproject.org/files/ENCFF014BMO/@@download/ENCFF014BMO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF155YHS bam unfiltered alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGT, ENCFF643CGH 1309139126 ENCODE Processing Pipeline e657411618192029467fac9ca80313a0 https://www.encodeproject.org/files/ENCFF155YHS/@@download/ENCFF155YHS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF098DSP bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGT, ENCFF643CGH 899548469 ENCODE Processing Pipeline 584ef1d989914130f8600bee6a7f1d64 https://www.encodeproject.org/files/ENCFF098DSP/@@download/ENCFF098DSP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF833DDJ bam unfiltered alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGR, ENCFF807MUK 994282061 ENCODE Processing Pipeline bf84c4c28e544d1849a230b193648c01 https://www.encodeproject.org/files/ENCFF833DDJ/@@download/ENCFF833DDJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF474MOK bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGR, ENCFF807MUK 597562496 ENCODE Processing Pipeline 62bb55934a2459aa37fb2a30281fab5b https://www.encodeproject.org/files/ENCFF474MOK/@@download/ENCFF474MOK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF388SBB bam unfiltered alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGT, ENCFF807MUK 1303827321 ENCODE Processing Pipeline 38dc477f78f14296e0c650d88f1783e6 https://www.encodeproject.org/files/ENCFF388SBB/@@download/ENCFF388SBB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF602BPO bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGT, ENCFF807MUK 899936915 ENCODE Processing Pipeline e67e47937d43dff66a0f2f5c228ab1df https://www.encodeproject.org/files/ENCFF602BPO/@@download/ENCFF602BPO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF951OYG bigWig signal p-value ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF014BMO 1336858308 ENCODE Processing Pipeline 0a05d4a6b79a34b2f2bca599ac92d91f https://www.encodeproject.org/files/ENCFF951OYG/@@download/ENCFF951OYG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF801EXL bigWig signal p-value ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF098DSP 1346517309 ENCODE Processing Pipeline c44e9fc555a373463044a95553eacef4 https://www.encodeproject.org/files/ENCFF801EXL/@@download/ENCFF801EXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF738VSY bigWig signal p-value ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF014BMO, ENCFF098DSP 1713532805 ENCODE Processing Pipeline 503d4151484bf829ceee4425bdafeb86 https://www.encodeproject.org/files/ENCFF738VSY/@@download/ENCFF738VSY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF288KIM bigWig fold change over control ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF014BMO 744369182 ENCODE Processing Pipeline 5f01730d6a8548b4e8e2702ead613cc0 https://www.encodeproject.org/files/ENCFF288KIM/@@download/ENCFF288KIM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF325OCI bigWig fold change over control ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF098DSP 1040558475 ENCODE Processing Pipeline c9089d33712c659c6573c51fb05ff7b6 https://www.encodeproject.org/files/ENCFF325OCI/@@download/ENCFF325OCI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF219FDG bigWig fold change over control ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF014BMO, ENCFF098DSP 1430902253 ENCODE Processing Pipeline fb44ea81eeb6573b37abef224edd3af0 https://www.encodeproject.org/files/ENCFF219FDG/@@download/ENCFF219FDG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF794VER bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF014BMO 5327613 ENCODE Processing Pipeline dbab3c37702213d2d24d6fab7b13d07d https://www.encodeproject.org/files/ENCFF794VER/@@download/ENCFF794VER.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF034IIU bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF098DSP 5730646 ENCODE Processing Pipeline aa5a438c7410da16c9d55fc7cfae4df4 https://www.encodeproject.org/files/ENCFF034IIU/@@download/ENCFF034IIU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF091GHM bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF014BMO, ENCFF098DSP 6233603 ENCODE Processing Pipeline 310f5156bd6d9eee2a60998218e3fac8 https://www.encodeproject.org/files/ENCFF091GHM/@@download/ENCFF091GHM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF556LFO bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF794VER 11244159 ENCODE Processing Pipeline f27ea4a6e1663373b569894abc9202ea https://www.encodeproject.org/files/ENCFF556LFO/@@download/ENCFF556LFO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF267VKH bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF034IIU 11397422 ENCODE Processing Pipeline a00d840b537e690c1aa0d8565a55b236 https://www.encodeproject.org/files/ENCFF267VKH/@@download/ENCFF267VKH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF991POI bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF091GHM 11727769 ENCODE Processing Pipeline 33e5031eec40776c0be23dd419766bf7 https://www.encodeproject.org/files/ENCFF991POI/@@download/ENCFF991POI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF059ELL bed narrowPeak conservative idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF034IIU, ENCFF091GHM, ENCFF419RSJ, ENCFF794VER 1186442 ENCODE Processing Pipeline 3c9061539cd72e92aaafa6bad5ec6ea2 https://www.encodeproject.org/files/ENCFF059ELL/@@download/ENCFF059ELL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF968CAY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF059ELL 1936222 ENCODE Processing Pipeline dd0df172acce20b3e7a49b1cfa75ae9b https://www.encodeproject.org/files/ENCFF968CAY/@@download/ENCFF968CAY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF222ZHH bed narrowPeak optimal idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF034IIU, ENCFF091GHM, ENCFF419RSJ, ENCFF794VER 1238541 ENCODE Processing Pipeline 804a89c70cf9fd7014840442a57d0e04 https://www.encodeproject.org/files/ENCFF222ZHH/@@download/ENCFF222ZHH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF592ESC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF222ZHH 1998157 ENCODE Processing Pipeline d160f932ab9cc1832682e7a9338f52d5 https://www.encodeproject.org/files/ENCFF592ESC/@@download/ENCFF592ESC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF839KCR bigWig fold change over control ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF425RUE, ENCFF474MOK 744659425 ENCODE Processing Pipeline e134a5e9e2b98cf69001e1503ce10736 https://www.encodeproject.org/files/ENCFF839KCR/@@download/ENCFF839KCR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF626NDF bigWig signal p-value ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF602BPO 1513269382 ENCODE Processing Pipeline 25bb22481109398a3d7c36977391df5b https://www.encodeproject.org/files/ENCFF626NDF/@@download/ENCFF626NDF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF056OXM bigWig fold change over control ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF602BPO 1039096768 ENCODE Processing Pipeline 48d05c681a5e3502937a2307270f873a https://www.encodeproject.org/files/ENCFF056OXM/@@download/ENCFF056OXM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF402YIY bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF494HZF 11639480 ENCODE Processing Pipeline 2c678a51b7b4041af9a989a07211bb54 https://www.encodeproject.org/files/ENCFF402YIY/@@download/ENCFF402YIY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF999YUU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF886CAV 1960095 ENCODE Processing Pipeline 6af083bb1eacd0cfb0a2358f8262c45d https://www.encodeproject.org/files/ENCFF999YUU/@@download/ENCFF999YUU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF988HJD bed narrowPeak optimal idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF215QRX, ENCFF494HZF, ENCFF639ZSQ 1252109 ENCODE Processing Pipeline bddbf848bde7839ac92b90dde93d3edf https://www.encodeproject.org/files/ENCFF988HJD/@@download/ENCFF988HJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF986DAP bigWig signal p-value ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF425RUE, ENCFF474MOK 1334977660 ENCODE Processing Pipeline e53c96e64caf4d78b3cbd62cb0794377 https://www.encodeproject.org/files/ENCFF986DAP/@@download/ENCFF986DAP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF731BRZ bigWig signal p-value ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF425RUE, ENCFF474MOK, ENCFF602BPO 1604433153 ENCODE Processing Pipeline e3332073285d03a95058356bff164652 https://www.encodeproject.org/files/ENCFF731BRZ/@@download/ENCFF731BRZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF411VPM bigWig fold change over control ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF425RUE, ENCFF474MOK, ENCFF602BPO 1435267582 ENCODE Processing Pipeline 0296f8de9694114c4f67ea3f8289e1b3 https://www.encodeproject.org/files/ENCFF411VPM/@@download/ENCFF411VPM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF215QRX bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF425RUE, ENCFF474MOK, ENCFF602BPO 6390766 ENCODE Processing Pipeline f21580aef51e831d034c483977981333 https://www.encodeproject.org/files/ENCFF215QRX/@@download/ENCFF215QRX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF776SHQ bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF639ZSQ 11288995 ENCODE Processing Pipeline 028a6839470f411afa41cf07b3648eac https://www.encodeproject.org/files/ENCFF776SHQ/@@download/ENCFF776SHQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF886CAV bed narrowPeak conservative idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF215QRX, ENCFF494HZF, ENCFF639ZSQ 1197440 ENCODE Processing Pipeline a8f2085737cea3bd42848d0895da6a56 https://www.encodeproject.org/files/ENCFF886CAV/@@download/ENCFF886CAV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF752BHK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF988HJD 2028926 ENCODE Processing Pipeline 383b07dfc7b3698353d133ff913cef6b https://www.encodeproject.org/files/ENCFF752BHK/@@download/ENCFF752BHK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF639ZSQ bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF425RUE, ENCFF474MOK 5366032 ENCODE Processing Pipeline 8022af1f733528645b2cd90cb379d4d8 https://www.encodeproject.org/files/ENCFF639ZSQ/@@download/ENCFF639ZSQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF494HZF bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF602BPO 5915098 ENCODE Processing Pipeline edd81504aab871fbb08fc8cbb1f34da2 https://www.encodeproject.org/files/ENCFF494HZF/@@download/ENCFF494HZF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF978GPY bigBed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215QRX 11933700 ENCODE Processing Pipeline 2b40f0aff851c744eff5761ad905c766 https://www.encodeproject.org/files/ENCFF978GPY/@@download/ENCFF978GPY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF785LEU fastq reads ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF414LZB 2497577675 Michael Snyder, Stanford 0ce7b984ec2e8cbce4f093d5dc816c14 SRA:SRR6214417 https://www.encodeproject.org/files/ENCFF785LEU/@@download/ENCFF785LEU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF852WDA fastq reads ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF497UCW 2619547303 Michael Snyder, Stanford cd381ee4e68617a62b40c41176ba79dd SRA:SRR6214418 https://www.encodeproject.org/files/ENCFF852WDA/@@download/ENCFF852WDA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF414LZB fastq reads ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF785LEU 2528443293 Michael Snyder, Stanford 198ac480909c3bb7e33468eaa8bdb2f3 SRA:SRR6214417 https://www.encodeproject.org/files/ENCFF414LZB/@@download/ENCFF414LZB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF497UCW fastq reads ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF852WDA 2584718590 Michael Snyder, Stanford 10f8a400d1897158e6ce270d87219ced SRA:SRR6214418 https://www.encodeproject.org/files/ENCFF497UCW/@@download/ENCFF497UCW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF592EJQ bam unfiltered alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF414LZB, ENCFF785LEU, ENCFF807MUK 5100303071 ENCODE Processing Pipeline db79e6dd18edb26d0c21eec6db63a839 https://www.encodeproject.org/files/ENCFF592EJQ/@@download/ENCFF592EJQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF177TLU bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF414LZB, ENCFF785LEU, ENCFF807MUK 4445092180 ENCODE Processing Pipeline 2df5e29e7cf19b384e4e43c829d59d91 https://www.encodeproject.org/files/ENCFF177TLU/@@download/ENCFF177TLU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF078NVW bam unfiltered alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF414LZB, ENCFF643CGH, ENCFF785LEU 5107990463 ENCODE Processing Pipeline b331f8e5660797700748ce129253d26d https://www.encodeproject.org/files/ENCFF078NVW/@@download/ENCFF078NVW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF791RQD bam unfiltered alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF497UCW, ENCFF807MUK, ENCFF852WDA 5265541737 ENCODE Processing Pipeline e8bbdcc958c5410c58045da1bd2619ca https://www.encodeproject.org/files/ENCFF791RQD/@@download/ENCFF791RQD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF058LBG bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF414LZB, ENCFF643CGH, ENCFF785LEU 4447741649 ENCODE Processing Pipeline b52b10f7d2e2087e1ebd86706ec6eab8 https://www.encodeproject.org/files/ENCFF058LBG/@@download/ENCFF058LBG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF026ARN bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF497UCW, ENCFF807MUK, ENCFF852WDA 4593269719 ENCODE Processing Pipeline c448f1a6755096c42e19528242739402 https://www.encodeproject.org/files/ENCFF026ARN/@@download/ENCFF026ARN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF865TXQ bam unfiltered alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF497UCW, ENCFF643CGH, ENCFF852WDA 5273427873 ENCODE Processing Pipeline 630206e023c71f69fbf3a043fe757a4d https://www.encodeproject.org/files/ENCFF865TXQ/@@download/ENCFF865TXQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF016ALA bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF497UCW, ENCFF643CGH, ENCFF852WDA 4596564000 ENCODE Processing Pipeline bb083ee26b8709537544d3bfff3cdeff https://www.encodeproject.org/files/ENCFF016ALA/@@download/ENCFF016ALA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF570ZQI bigWig signal p-value ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF177TLU 1262546853 ENCODE Processing Pipeline cca69d15776525b24629f7a633fcac72 https://www.encodeproject.org/files/ENCFF570ZQI/@@download/ENCFF570ZQI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF462RIH bigWig signal p-value ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF026ARN 1409706112 ENCODE Processing Pipeline 4219032fa59a8bdee9e67d37589d7709 https://www.encodeproject.org/files/ENCFF462RIH/@@download/ENCFF462RIH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF562ADX bigWig signal p-value ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF026ARN, ENCFF177TLU 1709464425 ENCODE Processing Pipeline 592f5a73b2965fc6b2fdd3f1cab5f913 https://www.encodeproject.org/files/ENCFF562ADX/@@download/ENCFF562ADX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF758CCF bigWig fold change over control ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF177TLU 1400727865 ENCODE Processing Pipeline 748b6ecac17e894ca1f679d3a3942774 https://www.encodeproject.org/files/ENCFF758CCF/@@download/ENCFF758CCF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF071URY bigWig fold change over control ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF026ARN 1422300373 ENCODE Processing Pipeline c870d3a5086478c1cc405ab2d7b452f4 https://www.encodeproject.org/files/ENCFF071URY/@@download/ENCFF071URY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF840VMR bigWig fold change over control ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF026ARN, ENCFF177TLU 1951786859 ENCODE Processing Pipeline 81f9bea7e8d40be87afa18b64915791b https://www.encodeproject.org/files/ENCFF840VMR/@@download/ENCFF840VMR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF621KDY bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF177TLU 6303236 ENCODE Processing Pipeline 7bea6b17c6d1eb617980f0bbc8917eb9 https://www.encodeproject.org/files/ENCFF621KDY/@@download/ENCFF621KDY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF348ETO bigBed narrowPeak conservative idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF503JJU 83208 ENCODE Processing Pipeline d23e63d3f26acaf768049cb2fb5d96bd https://www.encodeproject.org/files/ENCFF348ETO/@@download/ENCFF348ETO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF485TME bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF026ARN 6380069 ENCODE Processing Pipeline 1a14427b9930fb093cb318e6025aee39 https://www.encodeproject.org/files/ENCFF485TME/@@download/ENCFF485TME.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF073ZAT bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF026ARN, ENCFF177TLU 7114441 ENCODE Processing Pipeline 7bfbe761934801704e6941de98f12dfb https://www.encodeproject.org/files/ENCFF073ZAT/@@download/ENCFF073ZAT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF255AXP bigBed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF621KDY 11249890 ENCODE Processing Pipeline baf974bed58dccc5f56c2df71cf9b103 https://www.encodeproject.org/files/ENCFF255AXP/@@download/ENCFF255AXP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF063RHM bigBed narrowPeak optimal idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF711WEI 103914 ENCODE Processing Pipeline f4d349104181d08593ce72d73e2a5a9a https://www.encodeproject.org/files/ENCFF063RHM/@@download/ENCFF063RHM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF463FDG bigBed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF073ZAT 11161197 ENCODE Processing Pipeline 2c8761aaea62e40abcb70c7c3497984e https://www.encodeproject.org/files/ENCFF463FDG/@@download/ENCFF463FDG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF503JJU bed narrowPeak conservative idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF073ZAT, ENCFF485TME, ENCFF621KDY 18409 ENCODE Processing Pipeline 06790f7dfc7f0c36a00f97987cbb0412 https://www.encodeproject.org/files/ENCFF503JJU/@@download/ENCFF503JJU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF711WEI bed narrowPeak optimal idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF073ZAT, ENCFF485TME, ENCFF621KDY 31499 ENCODE Processing Pipeline 851ce7313343e5d2f6aecb2b7db5ba12 https://www.encodeproject.org/files/ENCFF711WEI/@@download/ENCFF711WEI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF118PEL bigBed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF485TME 11256631 ENCODE Processing Pipeline 15e680a79225ebb080c9bf0b99bb4bda https://www.encodeproject.org/files/ENCFF118PEL/@@download/ENCFF118PEL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF609TLP bigWig signal p-value ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF058LBG 1157058008 ENCODE Processing Pipeline a2136a833c1abd845f74c8efddd3eb01 https://www.encodeproject.org/files/ENCFF609TLP/@@download/ENCFF609TLP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF950MYU bigWig fold change over control ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF058LBG 1372478687 ENCODE Processing Pipeline fd716cedfcea260d47148f28fac3155d https://www.encodeproject.org/files/ENCFF950MYU/@@download/ENCFF950MYU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF288CAL bigWig fold change over control ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF016ALA, ENCFF058LBG 1938218489 ENCODE Processing Pipeline 4098c342355e40638e5a22b50886c722 https://www.encodeproject.org/files/ENCFF288CAL/@@download/ENCFF288CAL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF575NOG bigWig signal p-value ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF016ALA, ENCFF058LBG 1524454560 ENCODE Processing Pipeline 433c2e0c11f25e4223a5f4eadc0915f8 https://www.encodeproject.org/files/ENCFF575NOG/@@download/ENCFF575NOG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF683YSA bigWig fold change over control ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF016ALA 1395154034 ENCODE Processing Pipeline 5d82c405d1bb651dabb5c98e1888509d https://www.encodeproject.org/files/ENCFF683YSA/@@download/ENCFF683YSA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF859QKU bigWig signal p-value ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF016ALA 1305184795 ENCODE Processing Pipeline 1bd6cf6f1f39159437582206f91830ad https://www.encodeproject.org/files/ENCFF859QKU/@@download/ENCFF859QKU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF333IDQ bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF016ALA, ENCFF058LBG 7123847 ENCODE Processing Pipeline 9b561fb594b7301fd5de079d36b6c7f4 https://www.encodeproject.org/files/ENCFF333IDQ/@@download/ENCFF333IDQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF074QAR bed narrowPeak conservative idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF071KMX, ENCFF333IDQ, ENCFF419RSJ, ENCFF940SAZ 19603 ENCODE Processing Pipeline debf737561efe7cb864458a2bdfca8f4 https://www.encodeproject.org/files/ENCFF074QAR/@@download/ENCFF074QAR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF204RHH bigBed narrowPeak conservative idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF074QAR 86559 ENCODE Processing Pipeline 56cf39f2f0ab9d428a8fa5de56fcc1ca https://www.encodeproject.org/files/ENCFF204RHH/@@download/ENCFF204RHH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF802DCG bigBed narrowPeak optimal idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF596KQL 108411 ENCODE Processing Pipeline 9481d6ed499ea1635a26e3d4788dd8a2 https://www.encodeproject.org/files/ENCFF802DCG/@@download/ENCFF802DCG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF071KMX bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF058LBG 6308588 ENCODE Processing Pipeline 40ead999c83db84a583fdea252c8be24 https://www.encodeproject.org/files/ENCFF071KMX/@@download/ENCFF071KMX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF940SAZ bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF016ALA 6383093 ENCODE Processing Pipeline 8fa87ae92ae8d7e360154bef4ade8a59 https://www.encodeproject.org/files/ENCFF940SAZ/@@download/ENCFF940SAZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF544HLR bigBed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF071KMX 11256188 ENCODE Processing Pipeline 71866f0b5bfada6b8f2cb368d87e1cd6 https://www.encodeproject.org/files/ENCFF544HLR/@@download/ENCFF544HLR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF887RGE bigBed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF940SAZ 11266414 ENCODE Processing Pipeline eafbec5ad525268fe454b00202e37a59 https://www.encodeproject.org/files/ENCFF887RGE/@@download/ENCFF887RGE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF242YNK bigBed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF333IDQ 11211119 ENCODE Processing Pipeline 058f56dbc5f0aa7663cd741ef83b1b55 https://www.encodeproject.org/files/ENCFF242YNK/@@download/ENCFF242YNK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF596KQL bed narrowPeak optimal idr thresholded peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF071KMX, ENCFF333IDQ, ENCFF419RSJ, ENCFF940SAZ 33165 ENCODE Processing Pipeline 45a47017212079a824f40f5d45e74278 https://www.encodeproject.org/files/ENCFF596KQL/@@download/ENCFF596KQL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF160QJZ fastq reads ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF112BSI 3434795957 Michael Snyder, Stanford c2875495f762f31870d34eb1278c420d SRA:SRR6213999 https://www.encodeproject.org/files/ENCFF160QJZ/@@download/ENCFF160QJZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF652PMB/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF112BSI fastq reads ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF160QJZ 3127726722 Michael Snyder, Stanford 36c81dc74a9160011dddc9e0946fa0e3 SRA:SRR6213999 https://www.encodeproject.org/files/ENCFF112BSI/@@download/ENCFF112BSI.fastq.gz Illumina HiSeq 4000 /files/ENCFF887KWI/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF994WIY bam alignments ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF112BSI, ENCFF160QJZ, ENCFF643CGH 1546823990 ENCODE Processing Pipeline 4db6d5b260784a1731e2fd591a420286 https://www.encodeproject.org/files/ENCFF994WIY/@@download/ENCFF994WIY.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF713XPN bam unfiltered alignments ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF112BSI, ENCFF160QJZ, ENCFF643CGH 5963639045 ENCODE Processing Pipeline 138553ad87c037a252b5970624c94420 https://www.encodeproject.org/files/ENCFF713XPN/@@download/ENCFF713XPN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF871AZQ bam unfiltered alignments ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF112BSI, ENCFF160QJZ, ENCFF807MUK 5964783672 ENCODE Processing Pipeline c3c755d1251d9d3afce1059a207d47e5 https://www.encodeproject.org/files/ENCFF871AZQ/@@download/ENCFF871AZQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF910PEO bam alignments ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF112BSI, ENCFF160QJZ, ENCFF807MUK 1545199710 ENCODE Processing Pipeline 975ceaf2f2906c68d63150766a7f4cf9 https://www.encodeproject.org/files/ENCFF910PEO/@@download/ENCFF910PEO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF796DYJ bigWig fold change over control ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF481UTQ, ENCFF910PEO 636546849 ENCODE Processing Pipeline 36bcecf10c696adb2678b8ec9159f046 https://www.encodeproject.org/files/ENCFF796DYJ/@@download/ENCFF796DYJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF608WWL bed narrowPeak peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF481UTQ, ENCFF910PEO 5475321 ENCODE Processing Pipeline f69de8fd33915da4d9cff3374f187824 https://www.encodeproject.org/files/ENCFF608WWL/@@download/ENCFF608WWL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF614YOG bigBed narrowPeak peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF608WWL 13334692 ENCODE Processing Pipeline 9131121329eef6231cc5ea5835f2e49d https://www.encodeproject.org/files/ENCFF614YOG/@@download/ENCFF614YOG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF911III bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF534MPD 727523 ENCODE Processing Pipeline dec1d8c24d5c27febb33dd9932da93ac https://www.encodeproject.org/files/ENCFF911III/@@download/ENCFF911III.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF534MPD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF608WWL 341851 ENCODE Processing Pipeline 3efa991b9f6cf843b1ca472e627b7191 https://www.encodeproject.org/files/ENCFF534MPD/@@download/ENCFF534MPD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF990IOC bigWig signal p-value ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF481UTQ, ENCFF910PEO 741283425 ENCODE Processing Pipeline 127067f45b582352be9062677bc25432 https://www.encodeproject.org/files/ENCFF990IOC/@@download/ENCFF990IOC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF690OCV bigBed narrowPeak peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF132VFC 13350204 ENCODE Processing Pipeline 4e2b6dc2e92b9b07230fd96c1f995edd https://www.encodeproject.org/files/ENCFF690OCV/@@download/ENCFF690OCV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF737FFB bigWig fold change over control ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF654NZG, ENCFF994WIY 634901377 ENCODE Processing Pipeline e3eec355949f2b4c71e872a1bd9846de https://www.encodeproject.org/files/ENCFF737FFB/@@download/ENCFF737FFB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF132VFC bed narrowPeak peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF654NZG, ENCFF994WIY 5477355 ENCODE Processing Pipeline a094503e59f2e8f4df223b793b6ad924 https://www.encodeproject.org/files/ENCFF132VFC/@@download/ENCFF132VFC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF328BTO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF132VFC, ENCFF419RSJ 341906 ENCODE Processing Pipeline 08a341e12461b218790c9caf86b41c10 https://www.encodeproject.org/files/ENCFF328BTO/@@download/ENCFF328BTO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF162PSL bigWig signal p-value ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF654NZG, ENCFF994WIY 703505810 ENCODE Processing Pipeline 11baa765dcc63a38c40656214f3c8588 https://www.encodeproject.org/files/ENCFF162PSL/@@download/ENCFF162PSL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF669GTX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF328BTO 730499 ENCODE Processing Pipeline 068172e3ea55d2bc0fb4f56af78d381b https://www.encodeproject.org/files/ENCFF669GTX/@@download/ENCFF669GTX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF510UIJ fastq reads ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF606RQN 2235335441 Michael Snyder, Stanford 4d39ad1c48aa3cf738ff1a39d60e3f18 SRA:SRR6213036 https://www.encodeproject.org/files/ENCFF510UIJ/@@download/ENCFF510UIJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF117DXV/ released antibody characterized with exemption ENCFF606RQN fastq reads ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF510UIJ 2682612355 Michael Snyder, Stanford b510e86740da0e1a969ddb27a60af869 SRA:SRR6213036 https://www.encodeproject.org/files/ENCFF606RQN/@@download/ENCFF606RQN.fastq.gz Illumina HiSeq 4000 /files/ENCFF707FFD/ released antibody characterized with exemption ENCFF829KJH bam unfiltered alignments ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF510UIJ, ENCFF606RQN, ENCFF643CGH 4952881987 ENCODE Processing Pipeline 724fcfac91f5fc99164aab696604baea https://www.encodeproject.org/files/ENCFF829KJH/@@download/ENCFF829KJH.bam GRCh38 released antibody characterized with exemption ENCFF636DVC bam unfiltered alignments ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF510UIJ, ENCFF606RQN, ENCFF807MUK 4942416306 ENCODE Processing Pipeline 27449367c4d108f6c513372debcab94b https://www.encodeproject.org/files/ENCFF636DVC/@@download/ENCFF636DVC.bam hg19 released antibody characterized with exemption ENCFF069SYK bam alignments ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF510UIJ, ENCFF606RQN, ENCFF643CGH 4015897178 ENCODE Processing Pipeline 9e1db9dd319f3c9e589e83ec5b9fda9c https://www.encodeproject.org/files/ENCFF069SYK/@@download/ENCFF069SYK.bam GRCh38 released antibody characterized with exemption ENCFF671AZH bam alignments ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF510UIJ, ENCFF606RQN, ENCFF807MUK 4008251689 ENCODE Processing Pipeline 67b9491eca60d5f712944c4e557336f8 https://www.encodeproject.org/files/ENCFF671AZH/@@download/ENCFF671AZH.bam hg19 released antibody characterized with exemption ENCFF469FFJ bigWig signal p-value ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF671AZH, ENCFF856RNU 1001566759 ENCODE Processing Pipeline 5384a27f9c7b636c66917462a2ab3584 https://www.encodeproject.org/files/ENCFF469FFJ/@@download/ENCFF469FFJ.bigWig hg19 released antibody characterized with exemption ENCFF423BKD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF108GJC 108726 ENCODE Processing Pipeline de8305f9dada323cfae50d55fd52a6c3 https://www.encodeproject.org/files/ENCFF423BKD/@@download/ENCFF423BKD.bed.gz hg19 released antibody characterized with exemption ENCFF598SNZ bigWig fold change over control ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF671AZH, ENCFF856RNU 1267059580 ENCODE Processing Pipeline 68e603fbdd2119a6341ee8ed689ed36b https://www.encodeproject.org/files/ENCFF598SNZ/@@download/ENCFF598SNZ.bigWig hg19 released antibody characterized with exemption ENCFF119EXW bigBed narrowPeak peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF108GJC 11646715 ENCODE Processing Pipeline 2043e6954440d4276f346738361aa672 https://www.encodeproject.org/files/ENCFF119EXW/@@download/ENCFF119EXW.bigBed hg19 released antibody characterized with exemption ENCFF108GJC bed narrowPeak peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF671AZH, ENCFF856RNU 5734887 ENCODE Processing Pipeline 59a65498fe1a618154eec162abc6011e https://www.encodeproject.org/files/ENCFF108GJC/@@download/ENCFF108GJC.bed.gz hg19 released antibody characterized with exemption ENCFF060AVC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF423BKD 261051 ENCODE Processing Pipeline c1981f96f450565142ec2ca20b8c3452 https://www.encodeproject.org/files/ENCFF060AVC/@@download/ENCFF060AVC.bigBed hg19 released antibody characterized with exemption ENCFF946FJC bigBed narrowPeak peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF622HHY 11664795 ENCODE Processing Pipeline 3d6a71f7b23dca4970f8643e6c4ed3ae https://www.encodeproject.org/files/ENCFF946FJC/@@download/ENCFF946FJC.bigBed GRCh38 released antibody characterized with exemption ENCFF376QVJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF128AIK 262332 ENCODE Processing Pipeline 23fb437f1080986684c70f725a6ecb2c https://www.encodeproject.org/files/ENCFF376QVJ/@@download/ENCFF376QVJ.bigBed GRCh38 released antibody characterized with exemption ENCFF242SBK bigWig signal p-value ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF069SYK, ENCFF908QTW 1192062125 ENCODE Processing Pipeline 4084d301886f471f406d94faefbb8a1d https://www.encodeproject.org/files/ENCFF242SBK/@@download/ENCFF242SBK.bigWig GRCh38 released antibody characterized with exemption ENCFF038PEZ bigWig fold change over control ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF069SYK, ENCFF908QTW 1271081836 ENCODE Processing Pipeline 577e72d8ae2b3fa7d79bf162a87465d2 https://www.encodeproject.org/files/ENCFF038PEZ/@@download/ENCFF038PEZ.bigWig GRCh38 released antibody characterized with exemption ENCFF128AIK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF419RSJ, ENCFF622HHY 107700 ENCODE Processing Pipeline cd43b9eb75229927f49308ccac9c5764 https://www.encodeproject.org/files/ENCFF128AIK/@@download/ENCFF128AIK.bed.gz GRCh38 released antibody characterized with exemption ENCFF622HHY bed narrowPeak peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF069SYK, ENCFF908QTW 5735991 ENCODE Processing Pipeline 6acc23fdc65bc29d8b089659e9512c72 https://www.encodeproject.org/files/ENCFF622HHY/@@download/ENCFF622HHY.bed.gz GRCh38 released antibody characterized with exemption ENCFF247EXO fastq reads ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 1 100 paired-ended 2 ENCFF608KPI 2636899801 Michael Snyder, Stanford 00759e97d6f7ff8db253d3dccfb62e8d SRA:SRR6213925 https://www.encodeproject.org/files/ENCFF247EXO/@@download/ENCFF247EXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF651TLL fastq reads ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 1 100 paired-ended 1 ENCFF598JRF 2550845615 Michael Snyder, Stanford bc46fb0268ed3e0a96748a3be37cfcea SRA:SRR6213926 https://www.encodeproject.org/files/ENCFF651TLL/@@download/ENCFF651TLL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF608KPI fastq reads ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 1 100 paired-ended 1 ENCFF247EXO 2591572162 Michael Snyder, Stanford 56954a5b886ba884168de32e226954f9 SRA:SRR6213925 https://www.encodeproject.org/files/ENCFF608KPI/@@download/ENCFF608KPI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF598JRF fastq reads ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 1 100 paired-ended 2 ENCFF651TLL 2589364302 Michael Snyder, Stanford 39707899ecee10070e0f752c9b2a4d05 SRA:SRR6213926 https://www.encodeproject.org/files/ENCFF598JRF/@@download/ENCFF598JRF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF401VIW bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 100 ENCFF247EXO, ENCFF608KPI, ENCFF643CGH 4456733356 ENCODE Processing Pipeline 674dd408329c244913f7c41c23b273b9 https://www.encodeproject.org/files/ENCFF401VIW/@@download/ENCFF401VIW.bam GRCh38 released ENCFF550GMK bam unfiltered alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 100 ENCFF598JRF, ENCFF643CGH, ENCFF651TLL 5590433784 ENCODE Processing Pipeline 5ac5c3ce25054d63c12556e66b9acae5 https://www.encodeproject.org/files/ENCFF550GMK/@@download/ENCFF550GMK.bam GRCh38 released ENCFF986CIE bam unfiltered alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 100 ENCFF247EXO, ENCFF608KPI, ENCFF643CGH 5734318158 ENCODE Processing Pipeline 7800831daddf75a1efed79713e448e2e https://www.encodeproject.org/files/ENCFF986CIE/@@download/ENCFF986CIE.bam GRCh38 released ENCFF369JAU bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 100 ENCFF598JRF, ENCFF643CGH, ENCFF651TLL 4081759911 ENCODE Processing Pipeline 2614df501e4e51bfe1bf372d5cb74a04 https://www.encodeproject.org/files/ENCFF369JAU/@@download/ENCFF369JAU.bam GRCh38 released ENCFF460GFA bigWig signal p-value ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF401VIW, ENCFF426RDP 1132256325 ENCODE Processing Pipeline de33fe83644ffd51019b08b08a4dbad7 https://www.encodeproject.org/files/ENCFF460GFA/@@download/ENCFF460GFA.bigWig GRCh38 released ENCFF052KYN bigWig signal p-value ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF291AFY, ENCFF369JAU 1082754747 ENCODE Processing Pipeline ec514afaa4adfdfa896f9ce2101af9dc https://www.encodeproject.org/files/ENCFF052KYN/@@download/ENCFF052KYN.bigWig GRCh38 released ENCFF341ROJ bigWig signal p-value ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF291AFY, ENCFF369JAU, ENCFF401VIW, ENCFF426RDP 1841312514 ENCODE Processing Pipeline e4339b6e33e318791cd21f11784f6caf https://www.encodeproject.org/files/ENCFF341ROJ/@@download/ENCFF341ROJ.bigWig GRCh38 released ENCFF703NFO bigWig fold change over control ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF401VIW, ENCFF426RDP 1099647439 ENCODE Processing Pipeline 6b901141a53787e270f6eac98f397c30 https://www.encodeproject.org/files/ENCFF703NFO/@@download/ENCFF703NFO.bigWig GRCh38 released ENCFF029TYR bigWig fold change over control ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF291AFY, ENCFF369JAU 1071784066 ENCODE Processing Pipeline 6d6e05392ce816faa39eb2ea6df21268 https://www.encodeproject.org/files/ENCFF029TYR/@@download/ENCFF029TYR.bigWig GRCh38 released ENCFF828GEW bigWig fold change over control ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF291AFY, ENCFF369JAU, ENCFF401VIW, ENCFF426RDP 1982403159 ENCODE Processing Pipeline 1b1276e884a76badd12d62149750bbf1 https://www.encodeproject.org/files/ENCFF828GEW/@@download/ENCFF828GEW.bigWig GRCh38 released ENCFF176CKT bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF401VIW, ENCFF426RDP 6216438 ENCODE Processing Pipeline 912c368a63787ec47863ad09ad62b4f4 https://www.encodeproject.org/files/ENCFF176CKT/@@download/ENCFF176CKT.bed.gz GRCh38 released ENCFF592YUU bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF291AFY, ENCFF369JAU 6232888 ENCODE Processing Pipeline 13afc05bf130f35769f90ca4d469117f https://www.encodeproject.org/files/ENCFF592YUU/@@download/ENCFF592YUU.bed.gz GRCh38 released ENCFF087MSV bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF291AFY, ENCFF369JAU, ENCFF401VIW, ENCFF426RDP 7123753 ENCODE Processing Pipeline 228d5cf51a7a10e80a167dc6d1b5f1e3 https://www.encodeproject.org/files/ENCFF087MSV/@@download/ENCFF087MSV.bed.gz GRCh38 released ENCFF182KNW bigBed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF176CKT 11192245 ENCODE Processing Pipeline f97c1b96e20fce0a5d24141213452d83 https://www.encodeproject.org/files/ENCFF182KNW/@@download/ENCFF182KNW.bigBed GRCh38 released ENCFF880BWU bigBed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF592YUU 13388181 ENCODE Processing Pipeline b5d65f3328cf144f19a8c285ea4af349 https://www.encodeproject.org/files/ENCFF880BWU/@@download/ENCFF880BWU.bigBed GRCh38 released ENCFF710BMH bigBed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF087MSV 13282089 ENCODE Processing Pipeline c270c95845eac6f6abb44889ca4811b9 https://www.encodeproject.org/files/ENCFF710BMH/@@download/ENCFF710BMH.bigBed GRCh38 released ENCFF431EFX bed narrowPeak conservative idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF087MSV, ENCFF176CKT, ENCFF419RSJ, ENCFF592YUU 128858 ENCODE Processing Pipeline 8dc7231d160a3e50f4ed4db32a0e6a3c https://www.encodeproject.org/files/ENCFF431EFX/@@download/ENCFF431EFX.bed.gz GRCh38 released ENCFF945CEK bigBed narrowPeak conservative idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF431EFX 285590 ENCODE Processing Pipeline 110b2fadbdc0856f4bf4f38590738d95 https://www.encodeproject.org/files/ENCFF945CEK/@@download/ENCFF945CEK.bigBed GRCh38 released ENCFF233RBO bed narrowPeak optimal idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF087MSV, ENCFF176CKT, ENCFF419RSJ, ENCFF592YUU 220804 ENCODE Processing Pipeline b1d78fba47c1ce17be932e0c9fbc8cfa https://www.encodeproject.org/files/ENCFF233RBO/@@download/ENCFF233RBO.bed.gz GRCh38 released ENCFF982LQA bigBed narrowPeak optimal idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF233RBO 505217 ENCODE Processing Pipeline ac677914f91414942d5350b2c084dc8d https://www.encodeproject.org/files/ENCFF982LQA/@@download/ENCFF982LQA.bigBed GRCh38 released ENCFF806SYA bam unfiltered alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 100 ENCFF247EXO, ENCFF608KPI, ENCFF807MUK 5726840009 ENCODE Processing Pipeline b4957e44e36d95c29bedfd48f640abfb https://www.encodeproject.org/files/ENCFF806SYA/@@download/ENCFF806SYA.bam hg19 released ENCFF013ZIS bam unfiltered alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 100 ENCFF598JRF, ENCFF651TLL, ENCFF807MUK 5584765141 ENCODE Processing Pipeline 6fb681711694ce160a6a7cea6e962a9a https://www.encodeproject.org/files/ENCFF013ZIS/@@download/ENCFF013ZIS.bam hg19 released ENCFF822IOM bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 100 ENCFF247EXO, ENCFF608KPI, ENCFF807MUK 4450536013 ENCODE Processing Pipeline 46768dbdda20494cf6df07968a3ae348 https://www.encodeproject.org/files/ENCFF822IOM/@@download/ENCFF822IOM.bam hg19 released ENCFF503QER bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 100 ENCFF598JRF, ENCFF651TLL, ENCFF807MUK 4076940989 ENCODE Processing Pipeline fae25d1aab1ed9833b71a8a2385762f3 https://www.encodeproject.org/files/ENCFF503QER/@@download/ENCFF503QER.bam hg19 released ENCFF315LZZ bigWig signal p-value ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF583FAG, ENCFF822IOM 869291132 ENCODE Processing Pipeline 479fe7bcfc08b5a8c1963b3991b0e6de https://www.encodeproject.org/files/ENCFF315LZZ/@@download/ENCFF315LZZ.bigWig hg19 released ENCFF690FKK bigWig signal p-value ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF049MPQ, ENCFF503QER 1074824487 ENCODE Processing Pipeline b261be24fad7041d985e2e1ea396e6b1 https://www.encodeproject.org/files/ENCFF690FKK/@@download/ENCFF690FKK.bigWig hg19 released ENCFF624GKT bigWig signal p-value ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF049MPQ, ENCFF503QER, ENCFF583FAG, ENCFF822IOM 1572166790 ENCODE Processing Pipeline 749603ccfd8671e4a2b3c39c727b0f4c https://www.encodeproject.org/files/ENCFF624GKT/@@download/ENCFF624GKT.bigWig hg19 released ENCFF430AJB bigWig fold change over control ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF583FAG, ENCFF822IOM 1100017009 ENCODE Processing Pipeline dd1703274c9a311c9e8f2bca1756d646 https://www.encodeproject.org/files/ENCFF430AJB/@@download/ENCFF430AJB.bigWig hg19 released ENCFF566HLB bigWig fold change over control ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF049MPQ, ENCFF503QER 1068211803 ENCODE Processing Pipeline 9ce6a8a731ee1d1d6ca6445feb6a5947 https://www.encodeproject.org/files/ENCFF566HLB/@@download/ENCFF566HLB.bigWig hg19 released ENCFF195LUJ bigWig fold change over control ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF049MPQ, ENCFF503QER, ENCFF583FAG, ENCFF822IOM 2012696326 ENCODE Processing Pipeline 87ccf74227f1a439e1403d79c07da2dd https://www.encodeproject.org/files/ENCFF195LUJ/@@download/ENCFF195LUJ.bigWig hg19 released ENCFF480TTE bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF583FAG, ENCFF822IOM 6210987 ENCODE Processing Pipeline 374e78559a34de67d23cc29e6508a582 https://www.encodeproject.org/files/ENCFF480TTE/@@download/ENCFF480TTE.bed.gz hg19 released ENCFF411PFB bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF049MPQ, ENCFF503QER 6218142 ENCODE Processing Pipeline b56920f4e3ee139efec51cb15646b66e https://www.encodeproject.org/files/ENCFF411PFB/@@download/ENCFF411PFB.bed.gz hg19 released ENCFF319FAG bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF049MPQ, ENCFF503QER, ENCFF583FAG, ENCFF822IOM 7114940 ENCODE Processing Pipeline ba04cffbcf26bb2d5b0bd955c1c4c03d https://www.encodeproject.org/files/ENCFF319FAG/@@download/ENCFF319FAG.bed.gz hg19 released ENCFF705ISW bigBed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF480TTE 11174679 ENCODE Processing Pipeline 1d12cf0a1248316c3852000f8105f9de https://www.encodeproject.org/files/ENCFF705ISW/@@download/ENCFF705ISW.bigBed hg19 released ENCFF110OZT bigBed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF411PFB 13364193 ENCODE Processing Pipeline db7969efe239468bc6f7dbf4420158fd https://www.encodeproject.org/files/ENCFF110OZT/@@download/ENCFF110OZT.bigBed hg19 released ENCFF831JZV bigBed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF319FAG 13261138 ENCODE Processing Pipeline 8b532480cdbd363df15a6cbe0e95946d https://www.encodeproject.org/files/ENCFF831JZV/@@download/ENCFF831JZV.bigBed hg19 released ENCFF685HUX bed narrowPeak conservative idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF001TDO, ENCFF319FAG, ENCFF411PFB, ENCFF480TTE 126069 ENCODE Processing Pipeline 50d5f1574c3b41b5c733e90ab0a81725 https://www.encodeproject.org/files/ENCFF685HUX/@@download/ENCFF685HUX.bed.gz hg19 released ENCFF952SJO bigBed narrowPeak conservative idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF685HUX 279516 ENCODE Processing Pipeline 1d2b3aa25771348f754cf2bcc06c8b6c https://www.encodeproject.org/files/ENCFF952SJO/@@download/ENCFF952SJO.bigBed hg19 released ENCFF544CYG bed narrowPeak optimal idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF001TDO, ENCFF319FAG, ENCFF411PFB, ENCFF480TTE 222654 ENCODE Processing Pipeline 00341568066ea40847437d46812194c5 https://www.encodeproject.org/files/ENCFF544CYG/@@download/ENCFF544CYG.bed.gz hg19 released ENCFF359ECM bigBed narrowPeak optimal idr thresholded peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1, 2 ENCFF544CYG 505732 ENCODE Processing Pipeline 45db5268058502a4b7ad6cc1039c66bd https://www.encodeproject.org/files/ENCFF359ECM/@@download/ENCFF359ECM.bigBed hg19 released ENCFF002BFE fastq reads ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1225156251 Richard Myers, HAIB dccdb7c4a3fbfdb9f9dca2fcaaa13b85 SRA:SRR5338737 https://www.encodeproject.org/files/ENCFF002BFE/@@download/ENCFF002BFE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BFX/ released low read depth, antibody characterized with exemption ENCFF002BFF fastq reads ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1879740746 Richard Myers, HAIB 3b435cd8f84ae47732d0b473a60835a0 SRA:SRR5338738 https://www.encodeproject.org/files/ENCFF002BFF/@@download/ENCFF002BFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGD/ released low read depth, antibody characterized with exemption ENCFF968KLZ bigWig fold change over control ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF049HWT, ENCFF162VTZ, ENCFF632RLI 479009510 ENCODE Processing Pipeline 4d6ebe4a6a155e9eed72ba482de1a9c9 https://www.encodeproject.org/files/ENCFF968KLZ/@@download/ENCFF968KLZ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF164YNQ bigWig signal p-value ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF049HWT, ENCFF162VTZ, ENCFF632RLI 660129579 ENCODE Processing Pipeline dcf8f2909074d0e11f326eb0089f4809 https://www.encodeproject.org/files/ENCFF164YNQ/@@download/ENCFF164YNQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF173HSS bam unfiltered alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFE, ENCFF643CGH 1325269773 ENCODE Processing Pipeline 0ae191676e4e77a88229ebc00dfc274a https://www.encodeproject.org/files/ENCFF173HSS/@@download/ENCFF173HSS.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF787ECE bam unfiltered alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFF, ENCFF643CGH 2037838244 ENCODE Processing Pipeline 901ec0b479db57e1ad2568a8bb06380e https://www.encodeproject.org/files/ENCFF787ECE/@@download/ENCFF787ECE.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF638HCT bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFE, ENCFF643CGH 992394488 ENCODE Processing Pipeline 947144206289900286f330a2b38f7ae6 https://www.encodeproject.org/files/ENCFF638HCT/@@download/ENCFF638HCT.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF883YOY bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFF, ENCFF643CGH 1506467409 ENCODE Processing Pipeline d0fb953c04103eff064da516a1fe4515 https://www.encodeproject.org/files/ENCFF883YOY/@@download/ENCFF883YOY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF536TTK bigWig signal p-value ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF113QYJ, ENCFF321TIQ, ENCFF638HCT 688828725 ENCODE Processing Pipeline 3932ff73a162da52da92d008b59665d6 https://www.encodeproject.org/files/ENCFF536TTK/@@download/ENCFF536TTK.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF764OJV bigWig signal p-value ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF113QYJ, ENCFF321TIQ, ENCFF883YOY 930668729 ENCODE Processing Pipeline a52095733dd3c18d9269b4cd916adbf0 https://www.encodeproject.org/files/ENCFF764OJV/@@download/ENCFF764OJV.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF415PAE bigWig signal p-value ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF113QYJ, ENCFF321TIQ, ENCFF638HCT, ENCFF883YOY 831154122 ENCODE Processing Pipeline 2b6c217a2e1d8b2c6df786e4bb4006e5 https://www.encodeproject.org/files/ENCFF415PAE/@@download/ENCFF415PAE.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF037HXV bigWig fold change over control ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF113QYJ, ENCFF321TIQ, ENCFF638HCT 474719956 ENCODE Processing Pipeline 6571a381309b00214184a6c8ca6616d2 https://www.encodeproject.org/files/ENCFF037HXV/@@download/ENCFF037HXV.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF011XDH bigWig fold change over control ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF113QYJ, ENCFF321TIQ, ENCFF883YOY 670912868 ENCODE Processing Pipeline 4d992df094226c60dd68a1850504f821 https://www.encodeproject.org/files/ENCFF011XDH/@@download/ENCFF011XDH.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF615KKS bigWig fold change over control ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF113QYJ, ENCFF321TIQ, ENCFF638HCT, ENCFF883YOY 959955694 ENCODE Processing Pipeline 6bcb8d1b34f2f6dc341cd224735a754c https://www.encodeproject.org/files/ENCFF615KKS/@@download/ENCFF615KKS.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF749CMD bigBed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF201VJV 13408378 ENCODE Processing Pipeline f379c83fd981e99ecc7ae6869adc7267 https://www.encodeproject.org/files/ENCFF749CMD/@@download/ENCFF749CMD.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF201VJV bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF113QYJ, ENCFF321TIQ, ENCFF883YOY 5768887 ENCODE Processing Pipeline 093445be744b46274e52e9999f62dea7 https://www.encodeproject.org/files/ENCFF201VJV/@@download/ENCFF201VJV.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF158NBU bed narrowPeak conservative idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF201VJV, ENCFF419RSJ, ENCFF524LUT, ENCFF832QNI 179390 ENCODE Processing Pipeline 16b18a3626ee12ac0d13fd007e35e488 https://www.encodeproject.org/files/ENCFF158NBU/@@download/ENCFF158NBU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF832QNI bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF113QYJ, ENCFF321TIQ, ENCFF638HCT 5825382 ENCODE Processing Pipeline 3b2b4bfe52f8686ed004498479c1aad3 https://www.encodeproject.org/files/ENCFF832QNI/@@download/ENCFF832QNI.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF524LUT bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF113QYJ, ENCFF321TIQ, ENCFF638HCT, ENCFF883YOY 6606186 ENCODE Processing Pipeline c73f7a61989dc6e28d885ddaba72876e https://www.encodeproject.org/files/ENCFF524LUT/@@download/ENCFF524LUT.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF570IOD bigBed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF832QNI 13235900 ENCODE Processing Pipeline 626c95a1bcb51b851d130c10939bb7da https://www.encodeproject.org/files/ENCFF570IOD/@@download/ENCFF570IOD.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF430GQO bigBed narrowPeak optimal idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF964KDQ 379421 ENCODE Processing Pipeline 6afa3697810c57dbd3d5e3fc7f3a19c6 https://www.encodeproject.org/files/ENCFF430GQO/@@download/ENCFF430GQO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF642JTY bigBed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF524LUT 13337775 ENCODE Processing Pipeline 1ed6f589a72deaec530f9f1fb347a3c5 https://www.encodeproject.org/files/ENCFF642JTY/@@download/ENCFF642JTY.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF380IKV bigBed narrowPeak conservative idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF158NBU 374413 ENCODE Processing Pipeline 3c623222a0507334e61a24007688347a https://www.encodeproject.org/files/ENCFF380IKV/@@download/ENCFF380IKV.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF964KDQ bed narrowPeak optimal idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF201VJV, ENCFF419RSJ, ENCFF524LUT, ENCFF832QNI 183321 ENCODE Processing Pipeline 0e030190a94a2bf9c0cacfddfe0da664 https://www.encodeproject.org/files/ENCFF964KDQ/@@download/ENCFF964KDQ.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF216ISI bam unfiltered alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFE, ENCFF807MUK 1321880492 ENCODE Processing Pipeline e8f42a754835f71490d77acb59e17ca1 https://www.encodeproject.org/files/ENCFF216ISI/@@download/ENCFF216ISI.bam hg19 released low read depth, antibody characterized with exemption ENCFF372AYI bam unfiltered alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFF, ENCFF807MUK 2030124621 ENCODE Processing Pipeline e8c072cd6731c540b04252048ff91a6d https://www.encodeproject.org/files/ENCFF372AYI/@@download/ENCFF372AYI.bam hg19 released low read depth, antibody characterized with exemption ENCFF162VTZ bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFE, ENCFF807MUK 992529429 ENCODE Processing Pipeline 57ad7a86e9d18a9391f565e89355ff08 https://www.encodeproject.org/files/ENCFF162VTZ/@@download/ENCFF162VTZ.bam hg19 released low read depth, antibody characterized with exemption ENCFF373SVA bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFF, ENCFF807MUK 1506648939 ENCODE Processing Pipeline 4a3501f52eff5bbe52de34591e294b29 https://www.encodeproject.org/files/ENCFF373SVA/@@download/ENCFF373SVA.bam hg19 released low read depth, antibody characterized with exemption ENCFF801IKW bigWig signal p-value ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF049HWT, ENCFF162VTZ, ENCFF373SVA, ENCFF632RLI 989830008 ENCODE Processing Pipeline 9d24ecc9f0a9edf233b3feaf42d0a5cc https://www.encodeproject.org/files/ENCFF801IKW/@@download/ENCFF801IKW.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF424JEI bigBed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF392FYA 13373482 ENCODE Processing Pipeline ecf433ab3a62ec832e003c839c3fc545 https://www.encodeproject.org/files/ENCFF424JEI/@@download/ENCFF424JEI.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF380ONL bigBed narrowPeak optimal idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF974OIC 375805 ENCODE Processing Pipeline 919172adb2b421bc6c35e98bcd64af1d https://www.encodeproject.org/files/ENCFF380ONL/@@download/ENCFF380ONL.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF953WRA bigWig fold change over control ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF049HWT, ENCFF373SVA, ENCFF632RLI 664830295 ENCODE Processing Pipeline 61b36b87ca57f2a843ebdc08a0a19990 https://www.encodeproject.org/files/ENCFF953WRA/@@download/ENCFF953WRA.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF640NJO bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF049HWT, ENCFF162VTZ, ENCFF632RLI 5898427 ENCODE Processing Pipeline 71586927917965273b6ddd08788748b3 https://www.encodeproject.org/files/ENCFF640NJO/@@download/ENCFF640NJO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF796LFD bigWig fold change over control ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF049HWT, ENCFF162VTZ, ENCFF373SVA, ENCFF632RLI 971884768 ENCODE Processing Pipeline c1b472a92ba931d88809261ee2e14859 https://www.encodeproject.org/files/ENCFF796LFD/@@download/ENCFF796LFD.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF236YIV bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF049HWT, ENCFF162VTZ, ENCFF373SVA, ENCFF632RLI 6606384 ENCODE Processing Pipeline 39079c11f06e03b52817ab5baa7a382c https://www.encodeproject.org/files/ENCFF236YIV/@@download/ENCFF236YIV.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF514WTM bigBed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF640NJO 13234370 ENCODE Processing Pipeline 7e72e537e38c820e284e413166f18f61 https://www.encodeproject.org/files/ENCFF514WTM/@@download/ENCFF514WTM.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF425KBN bigWig signal p-value ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF049HWT, ENCFF373SVA, ENCFF632RLI 719686311 ENCODE Processing Pipeline ea5adb7625e04d2f87c015748bc8dcb9 https://www.encodeproject.org/files/ENCFF425KBN/@@download/ENCFF425KBN.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF974OIC bed narrowPeak optimal idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF236YIV, ENCFF392FYA, ENCFF640NJO 181311 ENCODE Processing Pipeline 79e70a2005e90b9615aa7013c7effab6 https://www.encodeproject.org/files/ENCFF974OIC/@@download/ENCFF974OIC.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF392FYA bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF049HWT, ENCFF373SVA, ENCFF632RLI 5815654 ENCODE Processing Pipeline 789ea54b22d634605073450e80cc16cd https://www.encodeproject.org/files/ENCFF392FYA/@@download/ENCFF392FYA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF666YKX bigBed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF236YIV 13311217 ENCODE Processing Pipeline 5062aeae582c6e2c5134d0df167c58fe https://www.encodeproject.org/files/ENCFF666YKX/@@download/ENCFF666YKX.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF918ZBN bed narrowPeak conservative idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF236YIV, ENCFF392FYA, ENCFF640NJO 177895 ENCODE Processing Pipeline b93c6dfcd334037dcd3542027a6978b8 https://www.encodeproject.org/files/ENCFF918ZBN/@@download/ENCFF918ZBN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF985HJX bigBed narrowPeak conservative idr thresholded peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF918ZBN 370953 ENCODE Processing Pipeline a59dfef16264071ac1bb22290b3e9489 https://www.encodeproject.org/files/ENCFF985HJX/@@download/ENCFF985HJX.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF673WUM bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF807MUK, ENCFF887YKT 5065533648 ENCODE Processing Pipeline 9fe90fdb052cd9e40da0344eb617fdf2 https://www.encodeproject.org/files/ENCFF673WUM/@@download/ENCFF673WUM.bam hg19 released ENCFF659OTN bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF807MUK 5595013330 ENCODE Processing Pipeline 3bc31c70f62a7eecbb4a7947d1111ef2 https://www.encodeproject.org/files/ENCFF659OTN/@@download/ENCFF659OTN.bam hg19 released ENCFF481LLT fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF887YKT 2286535847 Michael Snyder, Stanford a5be7a6274020ca3e70fd86c6cc24ddd SRA:SRR5111562 https://www.encodeproject.org/files/ENCFF481LLT/@@download/ENCFF481LLT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released ENCFF887YKT fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF481LLT 2355884652 Michael Snyder, Stanford 54718c62062077810a4464ed770ca98b SRA:SRR5111562 https://www.encodeproject.org/files/ENCFF887YKT/@@download/ENCFF887YKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released ENCFF176ERK fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF178JHO 2542619691 Michael Snyder, Stanford 676aa9eb6cb53a56a278007d33df25cf SRA:SRR5111563 https://www.encodeproject.org/files/ENCFF176ERK/@@download/ENCFF176ERK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released ENCFF178JHO fastq reads ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF176ERK 2602493478 Michael Snyder, Stanford 9825820f929d22a767ed1503895f8c33 SRA:SRR5111563 https://www.encodeproject.org/files/ENCFF178JHO/@@download/ENCFF178JHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released ENCFF241VLD bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF807MUK, ENCFF887YKT 4250594376 ENCODE Processing Pipeline 448a7fe3846c8cad35e5b19f4716bae7 https://www.encodeproject.org/files/ENCFF241VLD/@@download/ENCFF241VLD.bam hg19 released ENCFF219QMR bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF807MUK 4763958384 ENCODE Processing Pipeline e038f88a302588e8425a1b83a564f6dd https://www.encodeproject.org/files/ENCFF219QMR/@@download/ENCFF219QMR.bam hg19 released ENCFF741PFS bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 1309757418 ENCODE Processing Pipeline 85427ca96a4d0b54ac8e3d6cac21e74f https://www.encodeproject.org/files/ENCFF741PFS/@@download/ENCFF741PFS.bigWig hg19 released ENCFF603BJN bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 1215667184 ENCODE Processing Pipeline 9ed414349a72da94009bf2853fb6f031 https://www.encodeproject.org/files/ENCFF603BJN/@@download/ENCFF603BJN.bigWig hg19 released ENCFF527OUG bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 1161499223 ENCODE Processing Pipeline b6be3b3dcf1cb4a5c768a8f5638cd4c8 https://www.encodeproject.org/files/ENCFF527OUG/@@download/ENCFF527OUG.bigWig hg19 released ENCFF189TGX bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 1245356197 ENCODE Processing Pipeline c8ea02ccbdadc2465ced31f231a4357e https://www.encodeproject.org/files/ENCFF189TGX/@@download/ENCFF189TGX.bigWig hg19 released ENCFF959CLS bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF643CGH, ENCFF887YKT 5067679118 ENCODE Processing Pipeline 354f3182c0ac543a786743a5424069be https://www.encodeproject.org/files/ENCFF959CLS/@@download/ENCFF959CLS.bam GRCh38 released ENCFF376FCT bam unfiltered alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF643CGH 5598055848 ENCODE Processing Pipeline 1d6e3b4ae652a4d35c8e9d3f72d52cc7 https://www.encodeproject.org/files/ENCFF376FCT/@@download/ENCFF376FCT.bam GRCh38 released ENCFF902XGC bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF643CGH, ENCFF887YKT 4256979678 ENCODE Processing Pipeline f67747517d6f42a2c7684911d11fec8c https://www.encodeproject.org/files/ENCFF902XGC/@@download/ENCFF902XGC.bam GRCh38 released ENCFF141RIS bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF643CGH 4770654583 ENCODE Processing Pipeline 663dd105ef75f6e200e6322456a8fd50 https://www.encodeproject.org/files/ENCFF141RIS/@@download/ENCFF141RIS.bam GRCh38 released ENCFF835VKP bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF879YMO, ENCFF902XGC 1197066651 ENCODE Processing Pipeline c272d887f0f8f919ea2fa0b3ce136f71 https://www.encodeproject.org/files/ENCFF835VKP/@@download/ENCFF835VKP.bigWig GRCh38 released ENCFF895JTZ bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF141RIS, ENCFF574BGV 1162535290 ENCODE Processing Pipeline 8fdaa24b79a7f1fb348a97f049368fda https://www.encodeproject.org/files/ENCFF895JTZ/@@download/ENCFF895JTZ.bigWig GRCh38 released ENCFF886SUT bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF141RIS, ENCFF574BGV, ENCFF879YMO, ENCFF902XGC 2129900393 ENCODE Processing Pipeline f371640b5b4bc01771bceca0aa5aaaef https://www.encodeproject.org/files/ENCFF886SUT/@@download/ENCFF886SUT.bigWig GRCh38 released ENCFF081ICT bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF879YMO, ENCFF902XGC 1200311305 ENCODE Processing Pipeline 82ffdda4b2a8e7ef31710eb6955edaae https://www.encodeproject.org/files/ENCFF081ICT/@@download/ENCFF081ICT.bigWig GRCh38 released ENCFF780ORG bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF141RIS, ENCFF574BGV 1236517989 ENCODE Processing Pipeline 5c0aac7a0a79b183f5ea30237e45cce0 https://www.encodeproject.org/files/ENCFF780ORG/@@download/ENCFF780ORG.bigWig GRCh38 released ENCFF732KHL bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF141RIS, ENCFF574BGV, ENCFF879YMO, ENCFF902XGC 2207695423 ENCODE Processing Pipeline be48f0f66a2326c01d2baef4e7f8cb6a https://www.encodeproject.org/files/ENCFF732KHL/@@download/ENCFF732KHL.bigWig GRCh38 released ENCFF090PCO bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF879YMO, ENCFF902XGC 6842357 ENCODE Processing Pipeline db70c224be61501d5d2fe4b9e82e87b2 https://www.encodeproject.org/files/ENCFF090PCO/@@download/ENCFF090PCO.bed.gz GRCh38 released ENCFF944LIM bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF141RIS, ENCFF574BGV 6820393 ENCODE Processing Pipeline ea4d6042a7d138a0800fe2c36e602b35 https://www.encodeproject.org/files/ENCFF944LIM/@@download/ENCFF944LIM.bed.gz GRCh38 released ENCFF246SCF bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF141RIS, ENCFF574BGV, ENCFF879YMO, ENCFF902XGC 7206810 ENCODE Processing Pipeline 0306eccf1ba36f0300317614459b3a6a https://www.encodeproject.org/files/ENCFF246SCF/@@download/ENCFF246SCF.bed.gz GRCh38 released ENCFF986VFB bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF090PCO 13260732 ENCODE Processing Pipeline 06d0cff180bf3c7aca632ef14a3a8089 https://www.encodeproject.org/files/ENCFF986VFB/@@download/ENCFF986VFB.bigBed GRCh38 released ENCFF687RQO bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF246SCF 13042841 ENCODE Processing Pipeline 5891135ae9d0b1fe6c0137c3cc14292b https://www.encodeproject.org/files/ENCFF687RQO/@@download/ENCFF687RQO.bigBed GRCh38 released ENCFF194FLW bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF944LIM 13269060 ENCODE Processing Pipeline 2d8a55c9b99b7d7fa89876d4003c0fe0 https://www.encodeproject.org/files/ENCFF194FLW/@@download/ENCFF194FLW.bigBed GRCh38 released ENCFF147EGK bed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF090PCO, ENCFF246SCF, ENCFF419RSJ, ENCFF944LIM 319675 ENCODE Processing Pipeline 8d63b8517a41f9685288669e07092d17 https://www.encodeproject.org/files/ENCFF147EGK/@@download/ENCFF147EGK.bed.gz GRCh38 released ENCFF248DQO bigBed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF147EGK 704951 ENCODE Processing Pipeline 5f33db37bc77825158d898baeb09426f https://www.encodeproject.org/files/ENCFF248DQO/@@download/ENCFF248DQO.bigBed GRCh38 released ENCFF668JHK bed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF090PCO, ENCFF246SCF, ENCFF419RSJ, ENCFF944LIM 441018 ENCODE Processing Pipeline 357792f03430372cc4eced2589050baf https://www.encodeproject.org/files/ENCFF668JHK/@@download/ENCFF668JHK.bed.gz GRCh38 released ENCFF002NFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF668JHK 896851 ENCODE Processing Pipeline 6a321679e948eeba8f6488f00fe454b8 https://www.encodeproject.org/files/ENCFF002NFQ/@@download/ENCFF002NFQ.bigBed GRCh38 released ENCFF547XIO bigBed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF360OXD 705810 ENCODE Processing Pipeline 89f5d8af0900ad7535fdf2aa99ed006f https://www.encodeproject.org/files/ENCFF547XIO/@@download/ENCFF547XIO.bigBed hg19 released ENCFF870JLC bigBed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF733UTZ 889479 ENCODE Processing Pipeline 223ebf74a97a4568017920eaacd89ebb https://www.encodeproject.org/files/ENCFF870JLC/@@download/ENCFF870JLC.bigBed hg19 released ENCFF267YYC bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF354CAT 13257975 ENCODE Processing Pipeline 421b0b8244867907d98744f616fb54a0 https://www.encodeproject.org/files/ENCFF267YYC/@@download/ENCFF267YYC.bigBed hg19 released ENCFF863XZK bigWig signal p-value ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF219QMR, ENCFF241VLD, ENCFF287SKW, ENCFF941TZZ 1938152352 ENCODE Processing Pipeline 1e1db4fef5e0f89841a64665a34a9609 https://www.encodeproject.org/files/ENCFF863XZK/@@download/ENCFF863XZK.bigWig hg19 released ENCFF016QUV bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 6786003 ENCODE Processing Pipeline d41e5e922682d5852cd74c44b53512b4 https://www.encodeproject.org/files/ENCFF016QUV/@@download/ENCFF016QUV.bed.gz hg19 released ENCFF354CAT bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 6812560 ENCODE Processing Pipeline 8cd8dfcc8fd28ef2364d87ca60b3c47f https://www.encodeproject.org/files/ENCFF354CAT/@@download/ENCFF354CAT.bed.gz hg19 released ENCFF187SWR bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF219QMR, ENCFF241VLD, ENCFF287SKW, ENCFF941TZZ 7224516 ENCODE Processing Pipeline bffe8eb2e4eebca69e20ce01a0f805b9 https://www.encodeproject.org/files/ENCFF187SWR/@@download/ENCFF187SWR.bed.gz hg19 released ENCFF902CEB bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF187SWR 13056918 ENCODE Processing Pipeline 139b9dce53091d70b34e00d0cc244a05 https://www.encodeproject.org/files/ENCFF902CEB/@@download/ENCFF902CEB.bigBed hg19 released ENCFF360OXD bed narrowPeak conservative idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF016QUV, ENCFF187SWR, ENCFF354CAT 322109 ENCODE Processing Pipeline 2cf74eb6c77b5825a3ba1553d2be39bf https://www.encodeproject.org/files/ENCFF360OXD/@@download/ENCFF360OXD.bed.gz hg19 released ENCFF672QUT bigBed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF016QUV 13204410 ENCODE Processing Pipeline f21c7cde80ad3a3219494a4eb80e8cf4 https://www.encodeproject.org/files/ENCFF672QUT/@@download/ENCFF672QUT.bigBed hg19 released ENCFF733UTZ bed narrowPeak optimal idr thresholded peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF016QUV, ENCFF187SWR, ENCFF354CAT 438542 ENCODE Processing Pipeline 857832d61646de57b072948b6b33b410 https://www.encodeproject.org/files/ENCFF733UTZ/@@download/ENCFF733UTZ.bed.gz hg19 released ENCFF833JIA bigWig fold change over control ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF219QMR, ENCFF241VLD, ENCFF287SKW, ENCFF941TZZ 2214720653 ENCODE Processing Pipeline 5f9093d191d66f93e27fa72519077c14 https://www.encodeproject.org/files/ENCFF833JIA/@@download/ENCFF833JIA.bigWig hg19 released ENCFF040PJI fastq reads ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF143XEG 1974475536 Michael Snyder, Stanford 2e86e9b8db54fc673509eb4121f59b47 SRA:SRR6212897 https://www.encodeproject.org/files/ENCFF040PJI/@@download/ENCFF040PJI.fastq.gz Illumina HiSeq 2000 /files/ENCFF048IPJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF143XEG fastq reads ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF040PJI 2005988806 Michael Snyder, Stanford 4189867ee8a1988b98fa73ca42c44c93 SRA:SRR6212897 https://www.encodeproject.org/files/ENCFF143XEG/@@download/ENCFF143XEG.fastq.gz Illumina HiSeq 2000 /files/ENCFF702VBZ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF753ZPS bam alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF040PJI, ENCFF143XEG, ENCFF807MUK 3603724528 ENCODE Processing Pipeline dc5403607eb05985b8fc0b28748fd62b https://www.encodeproject.org/files/ENCFF753ZPS/@@download/ENCFF753ZPS.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF042GGM fastq reads ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF757JXI 4193938061 Michael Snyder, Stanford e9721eab86bfb699277b266b716613aa SRA:SRR6212898 https://www.encodeproject.org/files/ENCFF042GGM/@@download/ENCFF042GGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF702VBZ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF757JXI fastq reads ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF042GGM 4229280948 Michael Snyder, Stanford 98898bfe20a9f51d3dc14f78ce05f383 SRA:SRR6212898 https://www.encodeproject.org/files/ENCFF757JXI/@@download/ENCFF757JXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF048IPJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF704PKN bam unfiltered alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF040PJI, ENCFF042GGM, ENCFF143XEG, ENCFF643CGH, ENCFF757JXI 11786306693 ENCODE Processing Pipeline b8da824c16a44a05a8c2741d028bf0db https://www.encodeproject.org/files/ENCFF704PKN/@@download/ENCFF704PKN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF914TTV bam unfiltered alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF040PJI, ENCFF042GGM, ENCFF143XEG, ENCFF757JXI, ENCFF807MUK 11777715340 ENCODE Processing Pipeline 988ff5f9937528ea832934b8d38fc28c https://www.encodeproject.org/files/ENCFF914TTV/@@download/ENCFF914TTV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF779SGY bam alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF040PJI, ENCFF042GGM, ENCFF143XEG, ENCFF757JXI, ENCFF807MUK 8560220015 ENCODE Processing Pipeline 414e5f96ce0bbffbcaa6bdeca818ff96 https://www.encodeproject.org/files/ENCFF779SGY/@@download/ENCFF779SGY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF552ZFG bam alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF040PJI, ENCFF042GGM, ENCFF143XEG, ENCFF643CGH, ENCFF757JXI 8571508129 ENCODE Processing Pipeline 33d82502d12a9134fffb9878d8a0f250 https://www.encodeproject.org/files/ENCFF552ZFG/@@download/ENCFF552ZFG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF039SAY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF468WHP 575816 ENCODE Processing Pipeline ae8bb1696f78bbd6fb772b79351c5c11 https://www.encodeproject.org/files/ENCFF039SAY/@@download/ENCFF039SAY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF579DQD bigBed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF468WHP 11444444 ENCODE Processing Pipeline 853bd89a74e45586ad1eca370d30577c https://www.encodeproject.org/files/ENCFF579DQD/@@download/ENCFF579DQD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF811HOR bigWig signal p-value ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF027EKQ, ENCFF779SGY 1033848084 ENCODE Processing Pipeline 7db93ada40ae152ed8d82b305e30fcbd https://www.encodeproject.org/files/ENCFF811HOR/@@download/ENCFF811HOR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF200UAT bigWig fold change over control ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF027EKQ, ENCFF779SGY 1648982950 ENCODE Processing Pipeline 5307b41b238b8dd02765556b74e46f20 https://www.encodeproject.org/files/ENCFF200UAT/@@download/ENCFF200UAT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF920IJH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF039SAY 1021274 ENCODE Processing Pipeline 1ec7141baf4700eba2de272675e3641c https://www.encodeproject.org/files/ENCFF920IJH/@@download/ENCFF920IJH.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF468WHP bed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF027EKQ, ENCFF779SGY 6923657 ENCODE Processing Pipeline c95d32d0f84b0fa3da94d6a881bbbd2c https://www.encodeproject.org/files/ENCFF468WHP/@@download/ENCFF468WHP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF464YGC bigWig fold change over control ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF162JEL, ENCFF552ZFG 1650568966 ENCODE Processing Pipeline 318d746e2c9acf61789d124a52ee585f https://www.encodeproject.org/files/ENCFF464YGC/@@download/ENCFF464YGC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF933XOI bed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF162JEL, ENCFF552ZFG 6899273 ENCODE Processing Pipeline ed7543db68061087a29db1d1714bb814 https://www.encodeproject.org/files/ENCFF933XOI/@@download/ENCFF933XOI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF594CJV bigWig signal p-value ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF162JEL, ENCFF552ZFG 1032439854 ENCODE Processing Pipeline f56e9e9216a94553ad4bd050c77fe7a9 https://www.encodeproject.org/files/ENCFF594CJV/@@download/ENCFF594CJV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF776NBM bigBed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF933XOI 11428839 ENCODE Processing Pipeline dc1c0938f01784885d8225e55bf1a526 https://www.encodeproject.org/files/ENCFF776NBM/@@download/ENCFF776NBM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF825XAC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF933XOI 563784 ENCODE Processing Pipeline ca8ed9477ebf5573ac20c1823e2010a3 https://www.encodeproject.org/files/ENCFF825XAC/@@download/ENCFF825XAC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF735OGJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF825XAC 1005700 ENCODE Processing Pipeline 56335ab8ae264c63efcb41578bc4a4ac https://www.encodeproject.org/files/ENCFF735OGJ/@@download/ENCFF735OGJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF001GYW bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GZI 925074469 John Stamatoyannopoulos, UW 4d454ed75f35b2439905aac6f6470981 https://www.encodeproject.org/files/ENCFF001GYW/@@download/ENCFF001GYW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GYY bigBed broadPeak hotspots ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XMN 5733088 John Stamatoyannopoulos, UW c90b5377aeb65fc990a9ad874b81b35f https://www.encodeproject.org/files/ENCFF001GYY/@@download/ENCFF001GYY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GYZ bigBed broadPeak hotspots ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XMO 5122774 John Stamatoyannopoulos, UW 35d22c64ee2a5fbbff76a9c38949dc3f https://www.encodeproject.org/files/ENCFF001GYZ/@@download/ENCFF001GYZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GZA bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XMP 1587348 John Stamatoyannopoulos, UW 0853d59b44cf5061f2ffe09e9cf062f4 https://www.encodeproject.org/files/ENCFF001GZA/@@download/ENCFF001GZA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GZB bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XMQ 1086084 John Stamatoyannopoulos, UW 9b91778b3c5c0adc743ab9bd019acb82 https://www.encodeproject.org/files/ENCFF001GZB/@@download/ENCFF001GZB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GZC bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZJ 920708217 John Stamatoyannopoulos, UW 59f663421fc198c234aca778a36d0ab0 https://www.encodeproject.org/files/ENCFF001GZC/@@download/ENCFF001GZC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GZD bigWig raw signal ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GYW 145803580 John Stamatoyannopoulos, UW 7a4fb68a16de1ada638c853ec90f75bf https://www.encodeproject.org/files/ENCFF001GZD/@@download/ENCFF001GZD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GZE bigWig raw signal ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZC 158570508 John Stamatoyannopoulos, UW ccd7fdb2343d0c5688b1d5e973265306 https://www.encodeproject.org/files/ENCFF001GZE/@@download/ENCFF001GZE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001GZI fastq reads ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 1048304557 John Stamatoyannopoulos, UW 7c5e34e9e27a2858b46d40b3ec5f8911 https://www.encodeproject.org/files/ENCFF001GZI/@@download/ENCFF001GZI.fastq.gz Illumina Genome Analyzer /files/ENCFF001GZT/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001GZJ fastq reads ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 987055420 John Stamatoyannopoulos, UW 11ce1b3958f773c33f428753c28cfc32 https://www.encodeproject.org/files/ENCFF001GZJ/@@download/ENCFF001GZJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001GZT/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001XMN bed broadPeak hotspots ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GYW 3279333 John Stamatoyannopoulos, UW 9c0f273537d53de41c9b6ea0696b74d1 https://www.encodeproject.org/files/ENCFF001XMN/@@download/ENCFF001XMN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XMO bed broadPeak hotspots ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZC 2809427 John Stamatoyannopoulos, UW 97ef6564be66125dff723d6d2a6335f6 https://www.encodeproject.org/files/ENCFF001XMO/@@download/ENCFF001XMO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XMP bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GYW 946180 John Stamatoyannopoulos, UW cc1455d47dca75372ae98ed04074df75 https://www.encodeproject.org/files/ENCFF001XMP/@@download/ENCFF001XMP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XMQ bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZC 764324 John Stamatoyannopoulos, UW 9cd9622b1e96e405420eac8b55cb3556 https://www.encodeproject.org/files/ENCFF001XMQ/@@download/ENCFF001XMQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF002DCB bed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001GYW, ENCFF001GZC 1096428 ENCODE Consortium Analysis Working Group 200533e7cc808f8521c4b2cbdc0ac122 https://www.encodeproject.org/files/ENCFF002DCB/@@download/ENCFF002DCB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF483PSR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DCB 2264429 ENCODE Consortium 06216712217a469e46afedc189b7b2f9 https://www.encodeproject.org/files/ENCFF483PSR/@@download/ENCFF483PSR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF677ENU bam unfiltered alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GZJ, ENCFF807MUK 1127490327 ENCODE Processing Pipeline 20fbd703dc61907078d171728333c1d2 https://www.encodeproject.org/files/ENCFF677ENU/@@download/ENCFF677ENU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF160PTR bam unfiltered alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GZI, ENCFF807MUK 1166004034 ENCODE Processing Pipeline 7fcbbd33d6d1dc751b54883797aba2d1 https://www.encodeproject.org/files/ENCFF160PTR/@@download/ENCFF160PTR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF921SZK bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GZJ, ENCFF807MUK 819293579 ENCODE Processing Pipeline dd2800e2199e0e6f388363cf0d2ea9ae https://www.encodeproject.org/files/ENCFF921SZK/@@download/ENCFF921SZK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF170UJD bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GZI, ENCFF807MUK 775155459 ENCODE Processing Pipeline f992a1cf0db601221e44039cc98e3aa2 https://www.encodeproject.org/files/ENCFF170UJD/@@download/ENCFF170UJD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF193RTC bam unfiltered alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GZJ, ENCFF643CGH 1131638720 ENCODE Processing Pipeline 8f1332a22586a5ecf9073954d673cc28 https://www.encodeproject.org/files/ENCFF193RTC/@@download/ENCFF193RTC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF822MFC bam unfiltered alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GZI, ENCFF643CGH 1170191450 ENCODE Processing Pipeline e7f080dcc87bc52e368d7325cd5d98f2 https://www.encodeproject.org/files/ENCFF822MFC/@@download/ENCFF822MFC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF654KYF bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GZJ, ENCFF643CGH 819184321 ENCODE Processing Pipeline 98e0be7624ef79c5f60a4fba471bee20 https://www.encodeproject.org/files/ENCFF654KYF/@@download/ENCFF654KYF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF824XFI bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GZI, ENCFF643CGH 775025412 ENCODE Processing Pipeline e0cdbc48a5285fcf7866f8c9f04f786d https://www.encodeproject.org/files/ENCFF824XFI/@@download/ENCFF824XFI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF655DLD bigWig signal p-value ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF054LVG, ENCFF921SZK 426932583 ENCODE Processing Pipeline 92150dff01d4656969a4560a1a5eba46 https://www.encodeproject.org/files/ENCFF655DLD/@@download/ENCFF655DLD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF540BNE bigWig fold change over control ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF054LVG, ENCFF170UJD 319144307 ENCODE Processing Pipeline f7dd81a215ea776ae7cc287401f14689 https://www.encodeproject.org/files/ENCFF540BNE/@@download/ENCFF540BNE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF340TDI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF965BBC 1536394 ENCODE Processing Pipeline 444dcf8aa7596357ad8df79339a5c110 https://www.encodeproject.org/files/ENCFF340TDI/@@download/ENCFF340TDI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF796IAL bigWig signal p-value ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF054LVG, ENCFF170UJD 357206867 ENCODE Processing Pipeline b3b0024f92cf0b38077ca576a84096d2 https://www.encodeproject.org/files/ENCFF796IAL/@@download/ENCFF796IAL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF246TDM bigWig signal p-value ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF054LVG, ENCFF170UJD, ENCFF921SZK 492187476 ENCODE Processing Pipeline b8ad47687f340306281cacf00f1dc78f https://www.encodeproject.org/files/ENCFF246TDM/@@download/ENCFF246TDM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF538BDY bigWig fold change over control ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF054LVG, ENCFF921SZK 381725606 ENCODE Processing Pipeline d3d42a586fa660daa0ed2794b64251c3 https://www.encodeproject.org/files/ENCFF538BDY/@@download/ENCFF538BDY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF164VOK bigWig fold change over control ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF054LVG, ENCFF170UJD, ENCFF921SZK 584969781 ENCODE Processing Pipeline 718fb72d9577015ad8b714e0663445c0 https://www.encodeproject.org/files/ENCFF164VOK/@@download/ENCFF164VOK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF615DHG bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF535IOO 11111043 ENCODE Processing Pipeline e670aa4c48572a0221eed4418f883200 https://www.encodeproject.org/files/ENCFF615DHG/@@download/ENCFF615DHG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF082FUL bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF054LVG, ENCFF170UJD, ENCFF921SZK 5141963 ENCODE Processing Pipeline 86af700590ca5dd3417387ce4eb1afb6 https://www.encodeproject.org/files/ENCFF082FUL/@@download/ENCFF082FUL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF343JYF bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF082FUL 11527357 ENCODE Processing Pipeline 26df9bfeccf7854b515b2d0dd375cef9 https://www.encodeproject.org/files/ENCFF343JYF/@@download/ENCFF343JYF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF965BBC bed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF082FUL, ENCFF535IOO, ENCFF863FFV 905006 ENCODE Processing Pipeline b391745a29366760d1126d5c58fd8512 https://www.encodeproject.org/files/ENCFF965BBC/@@download/ENCFF965BBC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF863FFV bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF054LVG, ENCFF170UJD 4585271 ENCODE Processing Pipeline 267dfc560c68f89a60b9602a08a0dd5c https://www.encodeproject.org/files/ENCFF863FFV/@@download/ENCFF863FFV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF535IOO bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF054LVG, ENCFF921SZK 4745354 ENCODE Processing Pipeline fc5ee30bf6e6b762349c3f3a9fca85d5 https://www.encodeproject.org/files/ENCFF535IOO/@@download/ENCFF535IOO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF781FIQ bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF863FFV 11083350 ENCODE Processing Pipeline 85752a1c73a2a9ea96030be1d30af7d9 https://www.encodeproject.org/files/ENCFF781FIQ/@@download/ENCFF781FIQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF351UFJ bed narrowPeak conservative idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF082FUL, ENCFF535IOO, ENCFF863FFV 841514 ENCODE Processing Pipeline 73001f44e461c5256632666577e6b901 https://www.encodeproject.org/files/ENCFF351UFJ/@@download/ENCFF351UFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF832GVP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF351UFJ 1453593 ENCODE Processing Pipeline 276c3d47901242534f4164d8bfb90432 https://www.encodeproject.org/files/ENCFF832GVP/@@download/ENCFF832GVP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF848JAF bigWig signal p-value ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF540GSY, ENCFF824XFI 472385625 ENCODE Processing Pipeline 4ef3b31d5340c07ebc68d8d5fb72b7b0 https://www.encodeproject.org/files/ENCFF848JAF/@@download/ENCFF848JAF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF545VMQ bigWig signal p-value ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF540GSY, ENCFF654KYF 414537593 ENCODE Processing Pipeline aa6148ce3d21d9bbe04675973d52a67a https://www.encodeproject.org/files/ENCFF545VMQ/@@download/ENCFF545VMQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF016ZEP bigWig signal p-value ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF540GSY, ENCFF654KYF, ENCFF824XFI 491847849 ENCODE Processing Pipeline cfdb4284e4030c244cf9c475d4361583 https://www.encodeproject.org/files/ENCFF016ZEP/@@download/ENCFF016ZEP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF389CRO bigWig fold change over control ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF540GSY, ENCFF824XFI 320745665 ENCODE Processing Pipeline a564d6748a1719e1f55269c7681a52ad https://www.encodeproject.org/files/ENCFF389CRO/@@download/ENCFF389CRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF812JCF bigWig fold change over control ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF540GSY, ENCFF654KYF 370112352 ENCODE Processing Pipeline 757f5e5e9c458b6d2790c23a1738e0a5 https://www.encodeproject.org/files/ENCFF812JCF/@@download/ENCFF812JCF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF789PIF bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF376MMA 11131859 ENCODE Processing Pipeline cab8ca52ce42513c974d515a9736aa54 https://www.encodeproject.org/files/ENCFF789PIF/@@download/ENCFF789PIF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF726VTJ bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF826XZW 11558203 ENCODE Processing Pipeline a6a24c2f53a9439284e6904eb294ed7d https://www.encodeproject.org/files/ENCFF726VTJ/@@download/ENCFF726VTJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF578IWZ bigWig fold change over control ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF540GSY, ENCFF654KYF, ENCFF824XFI 581942414 ENCODE Processing Pipeline 1c777e7a1d22ce3134bfdda552e127ae https://www.encodeproject.org/files/ENCFF578IWZ/@@download/ENCFF578IWZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF826XZW bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF540GSY, ENCFF654KYF, ENCFF824XFI 5162733 ENCODE Processing Pipeline 061a75dbb739b1b6466b7b0c23ae27ae https://www.encodeproject.org/files/ENCFF826XZW/@@download/ENCFF826XZW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF252QZC bed narrowPeak conservative idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF376MMA, ENCFF419RSJ, ENCFF782ULZ, ENCFF826XZW 848133 ENCODE Processing Pipeline 2c9c8e4ea5aa48ff6a8091759ed28b1a https://www.encodeproject.org/files/ENCFF252QZC/@@download/ENCFF252QZC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF782ULZ bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF540GSY, ENCFF824XFI 4585799 ENCODE Processing Pipeline 2fece1902570732b272c07944793a708 https://www.encodeproject.org/files/ENCFF782ULZ/@@download/ENCFF782ULZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF181DJW bigBed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF782ULZ 11073916 ENCODE Processing Pipeline badbc5f6b0e719bde643266af5f6940b https://www.encodeproject.org/files/ENCFF181DJW/@@download/ENCFF181DJW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF970KNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF252QZC 1465930 ENCODE Processing Pipeline 2c10ab38e61b6083247d9fd3f9fc2df6 https://www.encodeproject.org/files/ENCFF970KNQ/@@download/ENCFF970KNQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF758WGZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF594OZI 1547123 ENCODE Processing Pipeline 544a97ecd015e627a0e345817218c0a2 https://www.encodeproject.org/files/ENCFF758WGZ/@@download/ENCFF758WGZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF376MMA bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF540GSY, ENCFF654KYF 4757841 ENCODE Processing Pipeline 844e6c6375a57ad733bc519ddf0c6e5c https://www.encodeproject.org/files/ENCFF376MMA/@@download/ENCFF376MMA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF594OZI bed narrowPeak optimal idr thresholded peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF376MMA, ENCFF419RSJ, ENCFF782ULZ, ENCFF826XZW 910571 ENCODE Processing Pipeline d95d4cd6d689eebb233b7b52a4a0c00f https://www.encodeproject.org/files/ENCFF594OZI/@@download/ENCFF594OZI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF827KUP fastq reads ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 1 ENCFF210SAO 2747742794 Michael Snyder, Stanford 9a1d9432bf06223da23ca4cebf4d828b SRA:SRR6214385 https://www.encodeproject.org/files/ENCFF827KUP/@@download/ENCFF827KUP.fastq.gz Illumina HiSeq 4000 /files/ENCFF665FNP/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF595RYN fastq reads ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 2 ENCFF753GKC 3183552024 Michael Snyder, Stanford 0bbb23b96b01b374505cf1f6335ae800 SRA:SRR6214384 https://www.encodeproject.org/files/ENCFF595RYN/@@download/ENCFF595RYN.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XDM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF210SAO fastq reads ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 1 100 paired-ended 2 ENCFF827KUP 3234606224 Michael Snyder, Stanford e09fb9d95bd32e6a9def84bd865c5988 SRA:SRR6214385 https://www.encodeproject.org/files/ENCFF210SAO/@@download/ENCFF210SAO.fastq.gz Illumina HiSeq 4000 /files/ENCFF276QOR/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF753GKC fastq reads ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 1 100 paired-ended 1 ENCFF595RYN 2738718687 Michael Snyder, Stanford a6bd51670b0cd5e1eec851f9cc3c1fe3 SRA:SRR6214384 https://www.encodeproject.org/files/ENCFF753GKC/@@download/ENCFF753GKC.fastq.gz Illumina HiSeq 4000 /files/ENCFF777BTD/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF124FTL bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 100 ENCFF210SAO, ENCFF807MUK, ENCFF827KUP 4648289429 ENCODE Processing Pipeline 1ab0f8a2328a04478382657600971e6d https://www.encodeproject.org/files/ENCFF124FTL/@@download/ENCFF124FTL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF645KSD bam unfiltered alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 100 ENCFF210SAO, ENCFF807MUK, ENCFF827KUP 5814428828 ENCODE Processing Pipeline e973f1ce730ee85247ee800303b0efc9 https://www.encodeproject.org/files/ENCFF645KSD/@@download/ENCFF645KSD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF747LHA bam unfiltered alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 100 ENCFF595RYN, ENCFF753GKC, ENCFF807MUK 5739072588 ENCODE Processing Pipeline 9975708704c128e04e5b77773e564084 https://www.encodeproject.org/files/ENCFF747LHA/@@download/ENCFF747LHA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF172CMH bam unfiltered alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 100 ENCFF210SAO, ENCFF643CGH, ENCFF827KUP 5825023503 ENCODE Processing Pipeline 7a975255753a71f0a54d3077298fc824 https://www.encodeproject.org/files/ENCFF172CMH/@@download/ENCFF172CMH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF141NLB bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 100 ENCFF210SAO, ENCFF643CGH, ENCFF827KUP 4655297800 ENCODE Processing Pipeline d33cd4a2ef1d080e7d4dc5c14bac4ad6 https://www.encodeproject.org/files/ENCFF141NLB/@@download/ENCFF141NLB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF449JJK bam unfiltered alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 100 ENCFF595RYN, ENCFF643CGH, ENCFF753GKC 5751285466 ENCODE Processing Pipeline 35e45c18e3cc4d5c1bbf0fa432057a41 https://www.encodeproject.org/files/ENCFF449JJK/@@download/ENCFF449JJK.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF251ZWC bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 100 ENCFF595RYN, ENCFF753GKC, ENCFF807MUK 4603636434 ENCODE Processing Pipeline 88ec556cb9d1dd28d9fef814066b527c https://www.encodeproject.org/files/ENCFF251ZWC/@@download/ENCFF251ZWC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF865RIS bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 100 ENCFF595RYN, ENCFF643CGH, ENCFF753GKC 4612444501 ENCODE Processing Pipeline 0742a38aedb5cef07041742c62eece71 https://www.encodeproject.org/files/ENCFF865RIS/@@download/ENCFF865RIS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF407WIU bigWig fold change over control ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF124FTL, ENCFF172XZA, ENCFF843IXX 2062340662 ENCODE Processing Pipeline 551d9ad725da84360e654a33788f28b0 https://www.encodeproject.org/files/ENCFF407WIU/@@download/ENCFF407WIU.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF372EZI bigWig signal p-value ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 1979191404 ENCODE Processing Pipeline 2944e5cc6cca6e0231b99c0ee90e33e9 https://www.encodeproject.org/files/ENCFF372EZI/@@download/ENCFF372EZI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF559WZA bigWig signal p-value ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF124FTL, ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 2387118401 ENCODE Processing Pipeline b96e06b13ce5a5b88c08cb26dd57464f https://www.encodeproject.org/files/ENCFF559WZA/@@download/ENCFF559WZA.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF129YAB bigWig signal p-value ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF124FTL, ENCFF172XZA, ENCFF843IXX 2003030331 ENCODE Processing Pipeline 3a1d6fca77bc7282f05d0c5ddc3c6c92 https://www.encodeproject.org/files/ENCFF129YAB/@@download/ENCFF129YAB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF677VMG bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF124FTL, ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 7117654 ENCODE Processing Pipeline a9241592e6c09129c45eb2d03138baf0 https://www.encodeproject.org/files/ENCFF677VMG/@@download/ENCFF677VMG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF861IZT bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 6630451 ENCODE Processing Pipeline 8167ff6ff1a4d115b660c0118b71ad3e https://www.encodeproject.org/files/ENCFF861IZT/@@download/ENCFF861IZT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF047AIF bigWig fold change over control ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 2079946876 ENCODE Processing Pipeline d000c0c52f5c9ba12443b4fc7ce5781d https://www.encodeproject.org/files/ENCFF047AIF/@@download/ENCFF047AIF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF107YOY bigBed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF861IZT 11485954 ENCODE Processing Pipeline bfdcb54eb60f26457c4145517af0f54d https://www.encodeproject.org/files/ENCFF107YOY/@@download/ENCFF107YOY.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF840XVN bed narrowPeak conservative idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF497HNH, ENCFF677VMG, ENCFF861IZT 26067 ENCODE Processing Pipeline 62edc73c2c0df1cc2a9ee6496ae5ecdb https://www.encodeproject.org/files/ENCFF840XVN/@@download/ENCFF840XVN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF936BFX bigWig signal p-value ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF141NLB, ENCFF475DWJ, ENCFF621RXC, ENCFF865RIS 2599385400 ENCODE Processing Pipeline 29e92260dfd7ae80582215c12e1c8d98 https://www.encodeproject.org/files/ENCFF936BFX/@@download/ENCFF936BFX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF282XGF bigWig fold change over control ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF865RIS 2055233274 ENCODE Processing Pipeline e701b8c7533fa72d1db59843057ef90e https://www.encodeproject.org/files/ENCFF282XGF/@@download/ENCFF282XGF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF341NBC bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF865RIS 6645404 ENCODE Processing Pipeline 26d8bba6020508eea52fc9c9db371ee8 https://www.encodeproject.org/files/ENCFF341NBC/@@download/ENCFF341NBC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF085RHD bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF141NLB, ENCFF475DWJ, ENCFF621RXC, ENCFF865RIS 7122600 ENCODE Processing Pipeline 92eb24fbfcf1b235ce1fd1612682b577 https://www.encodeproject.org/files/ENCFF085RHD/@@download/ENCFF085RHD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF422ZDU bigBed narrowPeak conservative idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF234DGQ 102258 ENCODE Processing Pipeline 5f3fce5784dea4721e2823d8c1145883 https://www.encodeproject.org/files/ENCFF422ZDU/@@download/ENCFF422ZDU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF314DLR bigWig fold change over control ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF124FTL, ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 2728004344 ENCODE Processing Pipeline 2d06efbdefbfce51ed39592bad4283af https://www.encodeproject.org/files/ENCFF314DLR/@@download/ENCFF314DLR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF497HNH bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF124FTL, ENCFF172XZA, ENCFF843IXX 6736532 ENCODE Processing Pipeline b5effc0c1f76cf29f1eb1f2cc4de4286 https://www.encodeproject.org/files/ENCFF497HNH/@@download/ENCFF497HNH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF706JFS bigBed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF497HNH 11432241 ENCODE Processing Pipeline cb40490d464b5e93701fb46a04f9d9df https://www.encodeproject.org/files/ENCFF706JFS/@@download/ENCFF706JFS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF895QTG bigBed narrowPeak conservative idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF840XVN 98541 ENCODE Processing Pipeline e0ddcfcdec8987d5739ab0e849689ce7 https://www.encodeproject.org/files/ENCFF895QTG/@@download/ENCFF895QTG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF207QBX bigWig fold change over control ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF141NLB, ENCFF475DWJ, ENCFF621RXC 2099054604 ENCODE Processing Pipeline 5053defcb5e84bd4bc9dfcbb55c9a1b3 https://www.encodeproject.org/files/ENCFF207QBX/@@download/ENCFF207QBX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF104ERF bigWig fold change over control ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF141NLB, ENCFF475DWJ, ENCFF621RXC, ENCFF865RIS 2711690571 ENCODE Processing Pipeline ec834ae38fe4abcafe387390bb923f63 https://www.encodeproject.org/files/ENCFF104ERF/@@download/ENCFF104ERF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF377REX bigBed narrowPeak optimal idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF038MCY 131274 ENCODE Processing Pipeline ea606bf876177329c0631d4f71040fba https://www.encodeproject.org/files/ENCFF377REX/@@download/ENCFF377REX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF360ALI bigWig signal p-value ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF141NLB, ENCFF475DWJ, ENCFF621RXC 2049465314 ENCODE Processing Pipeline bc7a2f5ae6be6bf9a9aa7cd6305ec037 https://www.encodeproject.org/files/ENCFF360ALI/@@download/ENCFF360ALI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF599GXM bigBed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF953LAR 11448616 ENCODE Processing Pipeline 534b1a27317197138ffd53b41defeef4 https://www.encodeproject.org/files/ENCFF599GXM/@@download/ENCFF599GXM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF150NHK bed narrowPeak optimal idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF085RHD, ENCFF341NBC, ENCFF419RSJ, ENCFF953LAR 49141 ENCODE Processing Pipeline eda735527fe7451afc55b172300877d0 https://www.encodeproject.org/files/ENCFF150NHK/@@download/ENCFF150NHK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF900BPJ bigWig signal p-value ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF475DWJ, ENCFF621RXC, ENCFF865RIS 2016703068 ENCODE Processing Pipeline 47618699a8e8237b43e23049a68de6a0 https://www.encodeproject.org/files/ENCFF900BPJ/@@download/ENCFF900BPJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF196KPW bigBed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF341NBC 11482300 ENCODE Processing Pipeline 74042590750c0a129615db5ffd626639 https://www.encodeproject.org/files/ENCFF196KPW/@@download/ENCFF196KPW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF757ASQ bigBed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF677VMG 11273366 ENCODE Processing Pipeline d0fc04ff4c70db389fd3b412274e98ec https://www.encodeproject.org/files/ENCFF757ASQ/@@download/ENCFF757ASQ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF038MCY bed narrowPeak optimal idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF001TDO, ENCFF497HNH, ENCFF677VMG, ENCFF861IZT 47141 ENCODE Processing Pipeline aa06ca4c79d567315ac87a58cd2094a4 https://www.encodeproject.org/files/ENCFF038MCY/@@download/ENCFF038MCY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF953LAR bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF141NLB, ENCFF475DWJ, ENCFF621RXC 6739724 ENCODE Processing Pipeline 4fa7172a097d177717fbb0243f850b22 https://www.encodeproject.org/files/ENCFF953LAR/@@download/ENCFF953LAR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF932LXA bigBed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF085RHD 11287892 ENCODE Processing Pipeline d8a2c0d5071b9ede9c62171a2e2b3543 https://www.encodeproject.org/files/ENCFF932LXA/@@download/ENCFF932LXA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF234DGQ bed narrowPeak conservative idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF085RHD, ENCFF341NBC, ENCFF419RSJ, ENCFF953LAR 27392 ENCODE Processing Pipeline cfbc3f76d004ab10c52d5f404b11cb69 https://www.encodeproject.org/files/ENCFF234DGQ/@@download/ENCFF234DGQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF065AOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1, 2 ENCFF150NHK 135864 ENCODE Processing Pipeline 8ecc1148aaade9fc2d247d3c5ee5cb12 https://www.encodeproject.org/files/ENCFF065AOZ/@@download/ENCFF065AOZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000RZP bigWig base overlap signal ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 668006042 Vishwanath Iyer, UTA 6d40f266af8f3b71930056c4052cb905 https://www.encodeproject.org/files/ENCFF000RZP/@@download/ENCFF000RZP.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000RZQ bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000SAB 1681730958 Vishwanath Iyer, UTA 4f37357d3bd4cc180642e03c49ec7a2c https://www.encodeproject.org/files/ENCFF000RZQ/@@download/ENCFF000RZQ.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000RZR bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTO 2235509 Vishwanath Iyer, UTA 1a11e0b32b96f227b68323f569ea4f28 https://www.encodeproject.org/files/ENCFF000RZR/@@download/ENCFF000RZR.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000RZS bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000SAD 1716745511 Vishwanath Iyer, UTA 4f9ba92d0a7d65776bdc61a1b5975378 https://www.encodeproject.org/files/ENCFF000RZS/@@download/ENCFF000RZS.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000RZU bigWig signal ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 5423491758 Vishwanath Iyer, UTA c9c9b8ab3ece7e97aad4cd7163c1c073 https://www.encodeproject.org/files/ENCFF000RZU/@@download/ENCFF000RZU.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000SAB fastq reads ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1533402022 Vishwanath Iyer, UTA 3e46b33103320ac66d233ec3656504a0 https://www.encodeproject.org/files/ENCFF000SAB/@@download/ENCFF000SAB.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000SAD fastq reads ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1536411254 Vishwanath Iyer, UTA e396639e76ca8be3160884eb591e3563 https://www.encodeproject.org/files/ENCFF000SAD/@@download/ENCFF000SAD.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF001UTO bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1400356 Vishwanath Iyer, UTA eb4322e60c37f8b88cbfc12a9abe8c4f https://www.encodeproject.org/files/ENCFF001UTO/@@download/ENCFF001UTO.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002DBJ bed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1480247 ENCODE Consortium Analysis Working Group c7819cf56ead7511c33aaac594c6aa44 https://www.encodeproject.org/files/ENCFF002DBJ/@@download/ENCFF002DBJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample missing control alignments ENCFF672VTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBJ 2798407 ENCODE Consortium 62fa6cf20772657a9d64f283ada6b57e https://www.encodeproject.org/files/ENCFF672VTJ/@@download/ENCFF672VTJ.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF466YOS bam unfiltered alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAB, ENCFF807MUK 2142940346 ENCODE Processing Pipeline 5b4e07d7b5ce2718053a3aaf4bf6dd1a https://www.encodeproject.org/files/ENCFF466YOS/@@download/ENCFF466YOS.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF115ARO bam unfiltered alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAD, ENCFF807MUK 2148786679 ENCODE Processing Pipeline e943751f5859066a10e62561481253e3 https://www.encodeproject.org/files/ENCFF115ARO/@@download/ENCFF115ARO.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF702HAR bam unfiltered alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAD, ENCFF643CGH 2161605920 ENCODE Processing Pipeline adbe253a2b8acae93368c1e459d185b1 https://www.encodeproject.org/files/ENCFF702HAR/@@download/ENCFF702HAR.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF796ZPZ bam unfiltered alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAB, ENCFF643CGH 2152456212 ENCODE Processing Pipeline b932531a07893c27c0af6377bc21e53b https://www.encodeproject.org/files/ENCFF796ZPZ/@@download/ENCFF796ZPZ.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF508RFI bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAD, ENCFF643CGH 1352548348 ENCODE Processing Pipeline ba0361fecb9410ef4a1de7f8c43455c2 https://www.encodeproject.org/files/ENCFF508RFI/@@download/ENCFF508RFI.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF248VFM bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAD, ENCFF807MUK 1353040105 ENCODE Processing Pipeline ef2bb40ae907ad4c65c11066ee86657a https://www.encodeproject.org/files/ENCFF248VFM/@@download/ENCFF248VFM.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF628LRK bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAB, ENCFF807MUK 1273091339 ENCODE Processing Pipeline 9f1151148893c1df0cb606c73b6da207 https://www.encodeproject.org/files/ENCFF628LRK/@@download/ENCFF628LRK.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF623HMX bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAB, ENCFF643CGH 1272603777 ENCODE Processing Pipeline d3b3de3578856319c52a44bdb528fbe0 https://www.encodeproject.org/files/ENCFF623HMX/@@download/ENCFF623HMX.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF100FYP bigWig signal p-value ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF623HMX 522925154 ENCODE Processing Pipeline 038c7a5ae3c4f3a18d04b92d26ec74fc https://www.encodeproject.org/files/ENCFF100FYP/@@download/ENCFF100FYP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF287MSW bigWig signal p-value ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF508RFI 522220825 ENCODE Processing Pipeline 6dab49795779407af673b66b9037c54b https://www.encodeproject.org/files/ENCFF287MSW/@@download/ENCFF287MSW.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF195JPP bigWig fold change over control ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF508RFI 644648980 ENCODE Processing Pipeline ac4823ed62acb31fb9189c87dab0cb77 https://www.encodeproject.org/files/ENCFF195JPP/@@download/ENCFF195JPP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF628MBW bigWig fold change over control ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF508RFI, ENCFF623HMX 1022859103 ENCODE Processing Pipeline 9514da33eb7733c5fdf18740557d3e24 https://www.encodeproject.org/files/ENCFF628MBW/@@download/ENCFF628MBW.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF897FJV bigWig fold change over control ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF623HMX 604736074 ENCODE Processing Pipeline db1253f61261b900396f49fd21d94a33 https://www.encodeproject.org/files/ENCFF897FJV/@@download/ENCFF897FJV.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF921JNS bigWig signal p-value ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF508RFI, ENCFF623HMX 508417950 ENCODE Processing Pipeline 9ec34c269766b4dea0b058ce30cef65b https://www.encodeproject.org/files/ENCFF921JNS/@@download/ENCFF921JNS.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF601KOW bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF508RFI 5256453 ENCODE Processing Pipeline bf43c681750e30f9c966298e0f77a8fc https://www.encodeproject.org/files/ENCFF601KOW/@@download/ENCFF601KOW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF663JNR bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF089NPT 11676727 ENCODE Processing Pipeline b2f88b44207c9cd2c3b21d39cb72390b https://www.encodeproject.org/files/ENCFF663JNR/@@download/ENCFF663JNR.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF744BKF bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF601KOW 11636788 ENCODE Processing Pipeline d312f036bfc43f6f11db032783effbcc https://www.encodeproject.org/files/ENCFF744BKF/@@download/ENCFF744BKF.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF089NPT bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF623HMX 5403398 ENCODE Processing Pipeline 3b997cb0e022e9eb81326c4590852f4d https://www.encodeproject.org/files/ENCFF089NPT/@@download/ENCFF089NPT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF871TPN bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF608TPR 12014154 ENCODE Processing Pipeline de37615143dd6eaea068b2635a326e7a https://www.encodeproject.org/files/ENCFF871TPN/@@download/ENCFF871TPN.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF685HMV bed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF089NPT, ENCFF419RSJ, ENCFF601KOW, ENCFF608TPR 1074581 ENCODE Processing Pipeline 81da51044631615dda94f0189299ce39 https://www.encodeproject.org/files/ENCFF685HMV/@@download/ENCFF685HMV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF178PLC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF685HMV 1835661 ENCODE Processing Pipeline 119b573e6d8f92f2d19efd41f1a3bae8 https://www.encodeproject.org/files/ENCFF178PLC/@@download/ENCFF178PLC.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF608TPR bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF508RFI, ENCFF623HMX 6319293 ENCODE Processing Pipeline 9fc526edb0e87dc8c97911a90abd136b https://www.encodeproject.org/files/ENCFF608TPR/@@download/ENCFF608TPR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF266CWC bigWig fold change over control ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF628LRK 602194055 ENCODE Processing Pipeline e3f5aa786023e8152ca2f08da71721d8 https://www.encodeproject.org/files/ENCFF266CWC/@@download/ENCFF266CWC.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF385NMS bigWig signal p-value ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF628LRK 523029814 ENCODE Processing Pipeline db76c0e3178ce045e39880403632cf06 https://www.encodeproject.org/files/ENCFF385NMS/@@download/ENCFF385NMS.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF915BMD bigWig signal p-value ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF248VFM, ENCFF602XLT, ENCFF628LRK 508229594 ENCODE Processing Pipeline c8e31cce12a7ea50b9add3d3414ef41c https://www.encodeproject.org/files/ENCFF915BMD/@@download/ENCFF915BMD.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF276KFR bigWig signal p-value ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF248VFM, ENCFF602XLT 522035718 ENCODE Processing Pipeline ffb16cbc131fdf01236eb6227784cec7 https://www.encodeproject.org/files/ENCFF276KFR/@@download/ENCFF276KFR.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF407HXA bigWig fold change over control ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF248VFM, ENCFF602XLT, ENCFF628LRK 1012163061 ENCODE Processing Pipeline b1690b5f733ee22ff7b40efc53a70cfb https://www.encodeproject.org/files/ENCFF407HXA/@@download/ENCFF407HXA.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF130LIZ bigWig fold change over control ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF248VFM, ENCFF602XLT 643735158 ENCODE Processing Pipeline e577d9b93042f99d4a3a643cd898c7ca https://www.encodeproject.org/files/ENCFF130LIZ/@@download/ENCFF130LIZ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF118UML bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF438DXI 11671950 ENCODE Processing Pipeline 4a55bc6cb79300e3866a6f9ed69e2877 https://www.encodeproject.org/files/ENCFF118UML/@@download/ENCFF118UML.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF531KAD bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF217YFS 12004764 ENCODE Processing Pipeline 63734e4f13f050a35afa39bf16a88063 https://www.encodeproject.org/files/ENCFF531KAD/@@download/ENCFF531KAD.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF007EZA bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF248VFM, ENCFF602XLT 5283201 ENCODE Processing Pipeline 8e8f50efe22e1fc2fd9ff11a5fd84fa4 https://www.encodeproject.org/files/ENCFF007EZA/@@download/ENCFF007EZA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF475OLM bigBed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007EZA 11661536 ENCODE Processing Pipeline 26e90ded2bf5a8bcf1a6e66896f6b9cd https://www.encodeproject.org/files/ENCFF475OLM/@@download/ENCFF475OLM.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF136BEY bed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF007EZA, ENCFF217YFS, ENCFF438DXI 1074391 ENCODE Processing Pipeline f0937e8a61eef201006009516fe71acb https://www.encodeproject.org/files/ENCFF136BEY/@@download/ENCFF136BEY.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF682QGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF136BEY 1833782 ENCODE Processing Pipeline 905f1f0f3fab8ace238d1a9cd5eb445b https://www.encodeproject.org/files/ENCFF682QGT/@@download/ENCFF682QGT.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF438DXI bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF628LRK 5404774 ENCODE Processing Pipeline 8d9826e9efce14d6f47062e66584c858 https://www.encodeproject.org/files/ENCFF438DXI/@@download/ENCFF438DXI.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF217YFS bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF248VFM, ENCFF602XLT, ENCFF628LRK 6316605 ENCODE Processing Pipeline d10c567fcc91ce8dbab9487baf39eeb7 https://www.encodeproject.org/files/ENCFF217YFS/@@download/ENCFF217YFS.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF484RTX bam unfiltered alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 36 ENCFF002EXE, ENCFF807MUK 1214235813 ENCODE Processing Pipeline 3f4ef9ff81b2dc2b83d66b41319a32b3 https://www.encodeproject.org/files/ENCFF484RTX/@@download/ENCFF484RTX.bam hg19 released low read length, low read depth ENCFF888QUG bam unfiltered alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 36 ENCFF002EWX, ENCFF807MUK 643734017 ENCODE Processing Pipeline ec2930dc9032db33b8beb098d0248a74 https://www.encodeproject.org/files/ENCFF888QUG/@@download/ENCFF888QUG.bam hg19 released low read length, low read depth ENCFF002EWX fastq reads ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 1 36 single-ended 499999712 Michael Snyder, Stanford f6d490615bf7fa655a2654210841ae78 SRA:SRR5111301 https://www.encodeproject.org/files/ENCFF002EWX/@@download/ENCFF002EWX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECN/ released low read length, low read depth ENCFF002EXE fastq reads ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 1 36 single-ended 976758744 Michael Snyder, Stanford e8b0f458ea72e8d1d10bdb618dffa2e3 SRA:SRR5111300 https://www.encodeproject.org/files/ENCFF002EXE/@@download/ENCFF002EXE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECO/ released low read length, low read depth ENCFF865GUF bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 36 ENCFF002EWX, ENCFF807MUK 480592807 ENCODE Processing Pipeline 6e9db848c29e647135bc7093416f09a5 https://www.encodeproject.org/files/ENCFF865GUF/@@download/ENCFF865GUF.bam hg19 released low read length, low read depth ENCFF312DGQ bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 36 ENCFF002EXE, ENCFF807MUK 882163439 ENCODE Processing Pipeline 1f68b645b5a75e2760520facee322e5a https://www.encodeproject.org/files/ENCFF312DGQ/@@download/ENCFF312DGQ.bam hg19 released low read length, low read depth ENCFF776MXK bigWig fold change over control ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF316UXC, ENCFF865GUF 307842927 ENCODE Processing Pipeline 95cfc1a22c573dd41288a68159522d52 https://www.encodeproject.org/files/ENCFF776MXK/@@download/ENCFF776MXK.bigWig hg19 released low read length, low read depth ENCFF474PQV bigWig signal p-value ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF316UXC, ENCFF865GUF 487676568 ENCODE Processing Pipeline f0d8aaeb11439a9161229d718e044d6c https://www.encodeproject.org/files/ENCFF474PQV/@@download/ENCFF474PQV.bigWig hg19 released low read length, low read depth ENCFF325KOI bigWig signal p-value ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF312DGQ, ENCFF939XHK 626425605 ENCODE Processing Pipeline 1ee151dd3590180e1aa0836bfa6e04cb https://www.encodeproject.org/files/ENCFF325KOI/@@download/ENCFF325KOI.bigWig hg19 released low read length, low read depth ENCFF759VUH bigWig signal p-value ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF312DGQ, ENCFF316UXC, ENCFF865GUF, ENCFF939XHK 1019257625 ENCODE Processing Pipeline 4f0eb9bd382d56798871d1f30e6d1028 https://www.encodeproject.org/files/ENCFF759VUH/@@download/ENCFF759VUH.bigWig hg19 released low read length, low read depth ENCFF927QWM bigWig fold change over control ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF312DGQ, ENCFF939XHK 476936742 ENCODE Processing Pipeline 7a42980fff2ca62b5b33499064107ff7 https://www.encodeproject.org/files/ENCFF927QWM/@@download/ENCFF927QWM.bigWig hg19 released low read length, low read depth ENCFF826ZVW bigWig fold change over control ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF312DGQ, ENCFF316UXC, ENCFF865GUF, ENCFF939XHK 860397487 ENCODE Processing Pipeline 4ab6b36dbd85a46eda2b665e195f0f6b https://www.encodeproject.org/files/ENCFF826ZVW/@@download/ENCFF826ZVW.bigWig hg19 released low read length, low read depth ENCFF817LEL bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF316UXC, ENCFF865GUF 5115154 ENCODE Processing Pipeline 1e1318c342dc0df66ef9a4674cd2663e https://www.encodeproject.org/files/ENCFF817LEL/@@download/ENCFF817LEL.bed.gz hg19 released low read length, low read depth ENCFF304NNT bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF312DGQ, ENCFF316UXC, ENCFF865GUF, ENCFF939XHK 6754958 ENCODE Processing Pipeline 3b3e58fde5d909de9b9ca957085e568d https://www.encodeproject.org/files/ENCFF304NNT/@@download/ENCFF304NNT.bed.gz hg19 released low read length, low read depth ENCFF695MQI bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF312DGQ, ENCFF939XHK 5840456 ENCODE Processing Pipeline de7e9a7c6a190f044cb2c29fa47d7dc4 https://www.encodeproject.org/files/ENCFF695MQI/@@download/ENCFF695MQI.bed.gz hg19 released low read length, low read depth ENCFF445TKQ bigBed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF695MQI 13252610 ENCODE Processing Pipeline c3c704cc9b26c20be92e84240acbf7d9 https://www.encodeproject.org/files/ENCFF445TKQ/@@download/ENCFF445TKQ.bigBed hg19 released low read length, low read depth ENCFF983PYA bigBed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF817LEL 10769793 ENCODE Processing Pipeline 09fc6ac7978696372e4c4ef8648d62b0 https://www.encodeproject.org/files/ENCFF983PYA/@@download/ENCFF983PYA.bigBed hg19 released low read length, low read depth ENCFF600GCR bigBed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF304NNT 13163691 ENCODE Processing Pipeline bb939d1cfae8a18c64ad4b8451f46742 https://www.encodeproject.org/files/ENCFF600GCR/@@download/ENCFF600GCR.bigBed hg19 released low read length, low read depth ENCFF920UPM bam unfiltered alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 36 ENCFF002EWX, ENCFF643CGH 646098134 ENCODE Processing Pipeline f0b2601122ae3ba9592cde22505e81bf https://www.encodeproject.org/files/ENCFF920UPM/@@download/ENCFF920UPM.bam GRCh38 released low read length, low read depth ENCFF535ZQH bam unfiltered alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 36 ENCFF002EXE, ENCFF643CGH 1219992695 ENCODE Processing Pipeline 0e5f9ddb61468878d7d282b01cd0e8e1 https://www.encodeproject.org/files/ENCFF535ZQH/@@download/ENCFF535ZQH.bam GRCh38 released low read length, low read depth ENCFF775QWE bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 36 ENCFF002EWX, ENCFF643CGH 480248120 ENCODE Processing Pipeline e950c41aebbcdaa866649eb209ca057c https://www.encodeproject.org/files/ENCFF775QWE/@@download/ENCFF775QWE.bam GRCh38 released low read length, low read depth ENCFF855UFW bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 36 ENCFF002EXE, ENCFF643CGH 881709437 ENCODE Processing Pipeline ceceee76a06b62d41c96e217a6d9f7ea https://www.encodeproject.org/files/ENCFF855UFW/@@download/ENCFF855UFW.bam GRCh38 released low read length, low read depth ENCFF545MSE bigWig signal p-value ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF714ZPY, ENCFF855UFW 526725591 ENCODE Processing Pipeline 69b043dcd283cc2ab9345a73317be7bd https://www.encodeproject.org/files/ENCFF545MSE/@@download/ENCFF545MSE.bigWig GRCh38 released low read length, low read depth ENCFF892PHF bigWig signal p-value ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF459QXO, ENCFF775QWE 433286975 ENCODE Processing Pipeline c4859a03346ce9e0b617a4d0ce9c1383 https://www.encodeproject.org/files/ENCFF892PHF/@@download/ENCFF892PHF.bigWig GRCh38 released low read length, low read depth ENCFF908FVN bigWig signal p-value ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF459QXO, ENCFF714ZPY, ENCFF775QWE, ENCFF855UFW 917971181 ENCODE Processing Pipeline 6d03360acfcec13012380d48fae66b3e https://www.encodeproject.org/files/ENCFF908FVN/@@download/ENCFF908FVN.bigWig GRCh38 released low read length, low read depth ENCFF125LIA bigWig fold change over control ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF459QXO, ENCFF775QWE 299288753 ENCODE Processing Pipeline cf098c8bf018d8ad1fcb9c823fd8f738 https://www.encodeproject.org/files/ENCFF125LIA/@@download/ENCFF125LIA.bigWig GRCh38 released low read length, low read depth ENCFF848CWD bigWig fold change over control ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF714ZPY, ENCFF855UFW 482214408 ENCODE Processing Pipeline 236c3e5b49f410518d5421b928ab86e3 https://www.encodeproject.org/files/ENCFF848CWD/@@download/ENCFF848CWD.bigWig GRCh38 released low read length, low read depth ENCFF602TFL bigWig fold change over control ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF459QXO, ENCFF714ZPY, ENCFF775QWE, ENCFF855UFW 910172123 ENCODE Processing Pipeline a0efc84843ffeef659b6d1fa3759f752 https://www.encodeproject.org/files/ENCFF602TFL/@@download/ENCFF602TFL.bigWig GRCh38 released low read length, low read depth ENCFF060SNH bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF459QXO, ENCFF775QWE 5010704 ENCODE Processing Pipeline e84051f09ad2d113986d4a726205d4f6 https://www.encodeproject.org/files/ENCFF060SNH/@@download/ENCFF060SNH.bed.gz GRCh38 released low read length, low read depth ENCFF326XPC bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF714ZPY, ENCFF855UFW 5556248 ENCODE Processing Pipeline b3c60e883552c7e9efb08224bac118d9 https://www.encodeproject.org/files/ENCFF326XPC/@@download/ENCFF326XPC.bed.gz GRCh38 released low read length, low read depth ENCFF364KRR bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF459QXO, ENCFF714ZPY, ENCFF775QWE, ENCFF855UFW 6645403 ENCODE Processing Pipeline 6771bb06a3fb82d5a3f59df5385ab8be https://www.encodeproject.org/files/ENCFF364KRR/@@download/ENCFF364KRR.bed.gz GRCh38 released low read length, low read depth ENCFF307PVL bigBed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF060SNH 10678205 ENCODE Processing Pipeline 85517452eb163ba66f57ef0a11eea992 https://www.encodeproject.org/files/ENCFF307PVL/@@download/ENCFF307PVL.bigBed GRCh38 released low read length, low read depth ENCFF822NVU bigBed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF326XPC 13198863 ENCODE Processing Pipeline 46d2a1d089e9eca98a5713a187c06163 https://www.encodeproject.org/files/ENCFF822NVU/@@download/ENCFF822NVU.bigBed GRCh38 released low read length, low read depth ENCFF519PMH bigBed narrowPeak conservative idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF271QKH 292050 ENCODE Processing Pipeline d9b0a3f73ca71f27234c683372e4083c https://www.encodeproject.org/files/ENCFF519PMH/@@download/ENCFF519PMH.bigBed GRCh38 released low read length, low read depth ENCFF971ISB bigBed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF364KRR 13230964 ENCODE Processing Pipeline 2c01e1c2f24d9ed5f265d71892ac31d3 https://www.encodeproject.org/files/ENCFF971ISB/@@download/ENCFF971ISB.bigBed GRCh38 released low read length, low read depth ENCFF271QKH bed narrowPeak conservative idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF060SNH, ENCFF326XPC, ENCFF364KRR, ENCFF419RSJ 135803 ENCODE Processing Pipeline f15b92f18cedd5f682f6052517050dee https://www.encodeproject.org/files/ENCFF271QKH/@@download/ENCFF271QKH.bed.gz GRCh38 released low read length, low read depth ENCFF049NRL bed narrowPeak optimal idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF060SNH, ENCFF326XPC, ENCFF364KRR, ENCFF419RSJ 166553 ENCODE Processing Pipeline 380dd6cda04e28871bb2b372685771ae https://www.encodeproject.org/files/ENCFF049NRL/@@download/ENCFF049NRL.bed.gz GRCh38 released low read length, low read depth ENCFF335FFZ bigBed narrowPeak optimal idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF049NRL 336532 ENCODE Processing Pipeline f21739076740d45b6b99d969b2de1c33 https://www.encodeproject.org/files/ENCFF335FFZ/@@download/ENCFF335FFZ.bigBed GRCh38 released low read length, low read depth ENCFF468XWV bed narrowPeak optimal idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF001TDO, ENCFF304NNT, ENCFF695MQI, ENCFF817LEL 149183 ENCODE Processing Pipeline 7c98bb198aa82c6c11d730914dbc2c6b https://www.encodeproject.org/files/ENCFF468XWV/@@download/ENCFF468XWV.bed.gz hg19 released low read length, low read depth ENCFF777MMO bed narrowPeak conservative idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF001TDO, ENCFF304NNT, ENCFF695MQI, ENCFF817LEL 114262 ENCODE Processing Pipeline 9ec2a80a86a9e7f0c8ca02e2a776c35d https://www.encodeproject.org/files/ENCFF777MMO/@@download/ENCFF777MMO.bed.gz hg19 released low read length, low read depth ENCFF400RVN bigBed narrowPeak optimal idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF468XWV 313023 ENCODE Processing Pipeline dc8cefd73fb2556877a13be03d680261 https://www.encodeproject.org/files/ENCFF400RVN/@@download/ENCFF400RVN.bigBed hg19 released low read length, low read depth ENCFF473DGM bigBed narrowPeak conservative idr thresholded peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF777MMO 214326 ENCODE Processing Pipeline 83d2a1d1e7d840cbf09fc404eadf149a https://www.encodeproject.org/files/ENCFF473DGM/@@download/ENCFF473DGM.bigBed hg19 released low read length, low read depth ENCFF939GNW fastq reads ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF044XFM 2577747687 Michael Snyder, Stanford 0f66277885dc54b51f41de93a117c3b1 SRA:SRR6212950 https://www.encodeproject.org/files/ENCFF939GNW/@@download/ENCFF939GNW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF044XFM fastq reads ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF939GNW 2606410606 Michael Snyder, Stanford 7ce7b0188701b91061bf8440a9bbe1bf SRA:SRR6212950 https://www.encodeproject.org/files/ENCFF044XFM/@@download/ENCFF044XFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF528YMC fastq reads ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF097PYZ 2494959024 Michael Snyder, Stanford 5cd39fd45ac89da96b5c3b6026172675 SRA:SRR6212949 https://www.encodeproject.org/files/ENCFF528YMC/@@download/ENCFF528YMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF097PYZ fastq reads ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF528YMC 2523604335 Michael Snyder, Stanford fa637f35076e11a1ba9baf12fe946092 SRA:SRR6212949 https://www.encodeproject.org/files/ENCFF097PYZ/@@download/ENCFF097PYZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF733CYW bam unfiltered alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF044XFM, ENCFF807MUK, ENCFF939GNW 5277096741 ENCODE Processing Pipeline a1186b034179c6f1a920f7fc3168b7d0 https://www.encodeproject.org/files/ENCFF733CYW/@@download/ENCFF733CYW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF548MVF bam unfiltered alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF097PYZ, ENCFF528YMC, ENCFF807MUK 5120927975 ENCODE Processing Pipeline 29e121e560a47686aac9d4979406ba87 https://www.encodeproject.org/files/ENCFF548MVF/@@download/ENCFF548MVF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF523IZS bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF097PYZ, ENCFF528YMC, ENCFF807MUK 4463950105 ENCODE Processing Pipeline d31a48a8641ab6f096b63a325dae8e01 https://www.encodeproject.org/files/ENCFF523IZS/@@download/ENCFF523IZS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF223KZR bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF044XFM, ENCFF807MUK, ENCFF939GNW 4579009658 ENCODE Processing Pipeline fdf85f01ea1021b0349bfd9cfd934489 https://www.encodeproject.org/files/ENCFF223KZR/@@download/ENCFF223KZR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF125UKU bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF097PYZ, ENCFF528YMC, ENCFF643CGH 4467204297 ENCODE Processing Pipeline 3b8028a39f7507d51dde1a855ee36c83 https://www.encodeproject.org/files/ENCFF125UKU/@@download/ENCFF125UKU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF666AGL bam unfiltered alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF044XFM, ENCFF643CGH, ENCFF939GNW 5285403020 ENCODE Processing Pipeline 50e1d8f04c8db9587ee278d9defd896a https://www.encodeproject.org/files/ENCFF666AGL/@@download/ENCFF666AGL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF893IIV bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF044XFM, ENCFF643CGH, ENCFF939GNW 4582506943 ENCODE Processing Pipeline bf2b5ca3b825032d315f14ca257f90c6 https://www.encodeproject.org/files/ENCFF893IIV/@@download/ENCFF893IIV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF152TEE bam unfiltered alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF097PYZ, ENCFF528YMC, ENCFF643CGH 5128994313 ENCODE Processing Pipeline 468de82981274df6e17e3b14f8d021ea https://www.encodeproject.org/files/ENCFF152TEE/@@download/ENCFF152TEE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF296THO bigWig signal p-value ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF523IZS 1271529141 ENCODE Processing Pipeline 34bc8afb583ccbd101252dd01b9a644a https://www.encodeproject.org/files/ENCFF296THO/@@download/ENCFF296THO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF643HLD bigWig signal p-value ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF223KZR 1319106664 ENCODE Processing Pipeline f6658e6337d50ba068bfffc3f2b17f9c https://www.encodeproject.org/files/ENCFF643HLD/@@download/ENCFF643HLD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF491DFX bigWig signal p-value ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF893IIV 1365124350 ENCODE Processing Pipeline 96c6ca0ec2170782e7cca1d4859b16a0 https://www.encodeproject.org/files/ENCFF491DFX/@@download/ENCFF491DFX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF131RNL bigWig signal p-value ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF223KZR, ENCFF523IZS 1613768868 ENCODE Processing Pipeline b0007c739e4e00c97519a8f6ad6eca0c https://www.encodeproject.org/files/ENCFF131RNL/@@download/ENCFF131RNL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF006VPG bigWig signal p-value ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF125UKU 1368031014 ENCODE Processing Pipeline 3c70f895f545d1c084a6d08f1939c226 https://www.encodeproject.org/files/ENCFF006VPG/@@download/ENCFF006VPG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF867PLU bigWig fold change over control ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF523IZS 1398427535 ENCODE Processing Pipeline 3270263b2fbf67148cf3ca2603b32bd5 https://www.encodeproject.org/files/ENCFF867PLU/@@download/ENCFF867PLU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF453CVQ bigWig fold change over control ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF223KZR 1414554576 ENCODE Processing Pipeline a15f6689e1a0aa19c0a713cb43cae3e4 https://www.encodeproject.org/files/ENCFF453CVQ/@@download/ENCFF453CVQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF855ELW bigWig signal p-value ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF125UKU, ENCFF893IIV 1540127081 ENCODE Processing Pipeline 1b701b13b977f1ae9e0fae0cfeacb087 https://www.encodeproject.org/files/ENCFF855ELW/@@download/ENCFF855ELW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF761UIP bigWig fold change over control ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF893IIV 1409708124 ENCODE Processing Pipeline 65408a8264c0c8a5044092a90e9937a7 https://www.encodeproject.org/files/ENCFF761UIP/@@download/ENCFF761UIP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF272MLX bigWig fold change over control ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF125UKU 1394915262 ENCODE Processing Pipeline 0202da57adae8ce1b22cdc5650a7a690 https://www.encodeproject.org/files/ENCFF272MLX/@@download/ENCFF272MLX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF004ODG bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF223KZR 6279243 ENCODE Processing Pipeline 27c3fe7bbaba208d1feab41fda6c34d9 https://www.encodeproject.org/files/ENCFF004ODG/@@download/ENCFF004ODG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF192IER bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF223KZR, ENCFF523IZS 7086575 ENCODE Processing Pipeline 6ed5fba2ca9ef40de313e1147a0ba360 https://www.encodeproject.org/files/ENCFF192IER/@@download/ENCFF192IER.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF533FEP bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF523IZS 6292098 ENCODE Processing Pipeline c467f05654832d5c882f7a3f4c9d21ec https://www.encodeproject.org/files/ENCFF533FEP/@@download/ENCFF533FEP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF207EAV bigWig fold change over control ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF223KZR, ENCFF523IZS 1973325212 ENCODE Processing Pipeline 22b8808b5c3e822c69f1b879b8f22dff https://www.encodeproject.org/files/ENCFF207EAV/@@download/ENCFF207EAV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF459HNG bigBed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF004ODG 11285840 ENCODE Processing Pipeline 95938122fc614ee0551250dedd4a604a https://www.encodeproject.org/files/ENCFF459HNG/@@download/ENCFF459HNG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF788XLJ bigBed narrowPeak conservative idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF180XYA 98101 ENCODE Processing Pipeline 1d218fa6705dc7b7e1f3af80d33d9d11 https://www.encodeproject.org/files/ENCFF788XLJ/@@download/ENCFF788XLJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF649EXL bed narrowPeak optimal idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF004ODG, ENCFF192IER, ENCFF533FEP 37972 ENCODE Processing Pipeline fde331a7d8add9af71f5ad9e761d84e3 https://www.encodeproject.org/files/ENCFF649EXL/@@download/ENCFF649EXL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF619GEI bigBed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF533FEP 11269988 ENCODE Processing Pipeline 9921dd28e08276d7fe64348bd2931e5f https://www.encodeproject.org/files/ENCFF619GEI/@@download/ENCFF619GEI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF167NGW bigBed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF192IER 11329732 ENCODE Processing Pipeline d843d69cf1751ada22f34c11affc5c41 https://www.encodeproject.org/files/ENCFF167NGW/@@download/ENCFF167NGW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF180XYA bed narrowPeak conservative idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF004ODG, ENCFF192IER, ENCFF533FEP 26694 ENCODE Processing Pipeline 3fcabb0d78c14119365d0fcd6a708812 https://www.encodeproject.org/files/ENCFF180XYA/@@download/ENCFF180XYA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF065FDJ bigWig fold change over control ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF125UKU, ENCFF893IIV 1975712565 ENCODE Processing Pipeline 48ee6b7c73c8bfb749ae9198fb9268fa https://www.encodeproject.org/files/ENCFF065FDJ/@@download/ENCFF065FDJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF644HCL bigBed narrowPeak optimal idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF649EXL 115548 ENCODE Processing Pipeline 269aa9912bd97d6372c0f39154b2f5e7 https://www.encodeproject.org/files/ENCFF644HCL/@@download/ENCFF644HCL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF490DZU bigBed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF792ICS 11277689 ENCODE Processing Pipeline d4c2df549b954be88dd8851fff5f90eb https://www.encodeproject.org/files/ENCFF490DZU/@@download/ENCFF490DZU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF772TUW bigBed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF951EKP 11342311 ENCODE Processing Pipeline 487bdb1176e724d27ca562b2430713b4 https://www.encodeproject.org/files/ENCFF772TUW/@@download/ENCFF772TUW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF561BVN bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF893IIV 6282156 ENCODE Processing Pipeline 70e1c7377b03e4ec30b20cc7149d6376 https://www.encodeproject.org/files/ENCFF561BVN/@@download/ENCFF561BVN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF163DKE bigBed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF561BVN 11301117 ENCODE Processing Pipeline bef1a7cd7d7966a0c4bf2f5bbc922d8f https://www.encodeproject.org/files/ENCFF163DKE/@@download/ENCFF163DKE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF442JHW bed narrowPeak conservative idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF561BVN, ENCFF792ICS, ENCFF951EKP 27032 ENCODE Processing Pipeline af4ce46f10b42edc47ed4354117b084a https://www.encodeproject.org/files/ENCFF442JHW/@@download/ENCFF442JHW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF792ICS bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF125UKU 6294060 ENCODE Processing Pipeline d8cdd92ad320dbe8e826b7da29dede3b https://www.encodeproject.org/files/ENCFF792ICS/@@download/ENCFF792ICS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF137FMN bed narrowPeak optimal idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF561BVN, ENCFF792ICS, ENCFF951EKP 38383 ENCODE Processing Pipeline fd8558b0026cce67445c717671c993b8 https://www.encodeproject.org/files/ENCFF137FMN/@@download/ENCFF137FMN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF951EKP bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF125UKU, ENCFF893IIV 7133481 ENCODE Processing Pipeline 38dbcd915f71753d08298883c932beea https://www.encodeproject.org/files/ENCFF951EKP/@@download/ENCFF951EKP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF639QOI bigBed narrowPeak conservative idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF442JHW 99815 ENCODE Processing Pipeline 1961bfe30e90cc3047f619fa4f41c419 https://www.encodeproject.org/files/ENCFF639QOI/@@download/ENCFF639QOI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF277ZSY bigBed narrowPeak optimal idr thresholded peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF137FMN 117746 ENCODE Processing Pipeline 068d421ef0ed93c1ddbbde1efc1aab87 https://www.encodeproject.org/files/ENCFF277ZSY/@@download/ENCFF277ZSY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF648WWC fastq reads ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 1 ENCFF869EFH 2395208983 Michael Snyder, Stanford 20dcd5750c838f95e2a6a676a485fd7e https://www.encodeproject.org/files/ENCFF648WWC/@@download/ENCFF648WWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF869EFH fastq reads ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 2 ENCFF648WWC 2479421378 Michael Snyder, Stanford 10c21fb154edad9108dc85d46d3725eb https://www.encodeproject.org/files/ENCFF869EFH/@@download/ENCFF869EFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF958JRR bam unfiltered alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF643CGH, ENCFF648WWC, ENCFF869EFH 5299091197 ENCODE Processing Pipeline a366070a3928992a57f14b23ece15237 https://www.encodeproject.org/files/ENCFF958JRR/@@download/ENCFF958JRR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF366CHV bam unfiltered alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF648WWC, ENCFF807MUK, ENCFF869EFH 5296233791 ENCODE Processing Pipeline 29898fd0cb908dfee616c0cd1428ee67 https://www.encodeproject.org/files/ENCFF366CHV/@@download/ENCFF366CHV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF601YGX bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF648WWC, ENCFF807MUK, ENCFF869EFH 4264479876 ENCODE Processing Pipeline 900ef4bf5caa6fbe617d7f64a78b9d92 https://www.encodeproject.org/files/ENCFF601YGX/@@download/ENCFF601YGX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF907RHN bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF643CGH, ENCFF648WWC, ENCFF869EFH 4266642598 ENCODE Processing Pipeline 8ba63ca24dfe934c1b58a785743bc201 https://www.encodeproject.org/files/ENCFF907RHN/@@download/ENCFF907RHN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF316NQC bigWig signal p-value ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF907RHN 1273626947 ENCODE Processing Pipeline 59463057b03ea3ae8fd345ec74e7c79a https://www.encodeproject.org/files/ENCFF316NQC/@@download/ENCFF316NQC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF433DEL bigWig fold change over control ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF907RHN 1331467709 ENCODE Processing Pipeline 51be21e934aef6b78513bbd4229f78a9 https://www.encodeproject.org/files/ENCFF433DEL/@@download/ENCFF433DEL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF730CVZ bigBed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF102OLT 11471100 ENCODE Processing Pipeline 008a29bb4c2d3260684a5a4b838e0e8c https://www.encodeproject.org/files/ENCFF730CVZ/@@download/ENCFF730CVZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF402BCJ bigWig signal p-value ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF601YGX 1399766429 ENCODE Processing Pipeline 114a063dd476804398bf0c3abea5c7e6 https://www.encodeproject.org/files/ENCFF402BCJ/@@download/ENCFF402BCJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF933TBE bigBed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF047EYM 11461706 ENCODE Processing Pipeline b0fbe5a7853058f2a06bb734581f6b13 https://www.encodeproject.org/files/ENCFF933TBE/@@download/ENCFF933TBE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF102OLT bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF907RHN 6339665 ENCODE Processing Pipeline 07232daedef68618753165e350606f3e https://www.encodeproject.org/files/ENCFF102OLT/@@download/ENCFF102OLT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF047EYM bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF601YGX 6350375 ENCODE Processing Pipeline 8abe941c59cf5b7cf216ee1a242b1ed7 https://www.encodeproject.org/files/ENCFF047EYM/@@download/ENCFF047EYM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF034PAU bigWig fold change over control ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF601YGX 1319582764 ENCODE Processing Pipeline b7b6e66919aaf6c6c6561c864659b206 https://www.encodeproject.org/files/ENCFF034PAU/@@download/ENCFF034PAU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF028VGN fastq reads ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 1 ENCFF863FQO 3906353870 Michael Snyder, Stanford add41f35dfec5b26dc11d0e5754125f0 https://www.encodeproject.org/files/ENCFF028VGN/@@download/ENCFF028VGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF863FQO fastq reads ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 2 ENCFF028VGN 3985358713 Michael Snyder, Stanford ecf5d494485e131da6ee7982ee32dd93 https://www.encodeproject.org/files/ENCFF863FQO/@@download/ENCFF863FQO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF255GSR bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF028VGN, ENCFF807MUK, ENCFF863FQO 6377314258 ENCODE Processing Pipeline edfa1838fe923f6ec7073dd9e7fd53c5 https://www.encodeproject.org/files/ENCFF255GSR/@@download/ENCFF255GSR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF366APE bam unfiltered alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF028VGN, ENCFF807MUK, ENCFF863FQO 7633203215 ENCODE Processing Pipeline 5a4bfd83b0d8764073aac5a505244568 https://www.encodeproject.org/files/ENCFF366APE/@@download/ENCFF366APE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF630EQD bam unfiltered alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF028VGN, ENCFF643CGH, ENCFF863FQO 7643064973 ENCODE Processing Pipeline cd1f9da90ec1cd6ac292db67c1cea534 https://www.encodeproject.org/files/ENCFF630EQD/@@download/ENCFF630EQD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF369UDW bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF028VGN, ENCFF643CGH, ENCFF863FQO 6374794038 ENCODE Processing Pipeline 8c80f03213a512b40dd273b978d14ed1 https://www.encodeproject.org/files/ENCFF369UDW/@@download/ENCFF369UDW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF991ANZ bigWig signal p-value ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF369UDW 1476815165 ENCODE Processing Pipeline 2d1f0ef605ce02c1f16a95efc5201f30 https://www.encodeproject.org/files/ENCFF991ANZ/@@download/ENCFF991ANZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF215CEB bigWig signal p-value ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF369UDW, ENCFF907RHN 1935319062 ENCODE Processing Pipeline cf405b058a8d83cd285ec11bdfc28f76 https://www.encodeproject.org/files/ENCFF215CEB/@@download/ENCFF215CEB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF474KEI bigWig signal p-value ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF255GSR 1412886498 ENCODE Processing Pipeline 7a5573940f8668a0a56da6fe116fc779 https://www.encodeproject.org/files/ENCFF474KEI/@@download/ENCFF474KEI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF429LNT bigWig signal p-value ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF255GSR, ENCFF601YGX 1937329820 ENCODE Processing Pipeline fae2b0278dc5fdab30347181a0035fc3 https://www.encodeproject.org/files/ENCFF429LNT/@@download/ENCFF429LNT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF073SEV bigWig fold change over control ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF255GSR 1635166060 ENCODE Processing Pipeline bfb1b33e8ac56d9359729f50330c6138 https://www.encodeproject.org/files/ENCFF073SEV/@@download/ENCFF073SEV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF396ZNG bigWig fold change over control ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF369UDW 1627355479 ENCODE Processing Pipeline ed14b4a6dae81f0d44809404ced4777d https://www.encodeproject.org/files/ENCFF396ZNG/@@download/ENCFF396ZNG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF937YGV bigWig fold change over control ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF255GSR, ENCFF601YGX 2066724633 ENCODE Processing Pipeline 7e3c25784efac3c7aaafcd5f204c17de https://www.encodeproject.org/files/ENCFF937YGV/@@download/ENCFF937YGV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF014UVA bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF255GSR, ENCFF601YGX 7205622 ENCODE Processing Pipeline 84ef9e4cb30dc5c44cc648eea32e6f8c https://www.encodeproject.org/files/ENCFF014UVA/@@download/ENCFF014UVA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF703NCN bed narrowPeak conservative idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF014UVA, ENCFF047EYM, ENCFF186ZMA 29030 ENCODE Processing Pipeline 0f8c730f175f5a8227056a93edf0fb15 https://www.encodeproject.org/files/ENCFF703NCN/@@download/ENCFF703NCN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF141DVW bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF369UDW 6914291 ENCODE Processing Pipeline 6b6f4dd9c2816f3efcd9755f7c2b0dd4 https://www.encodeproject.org/files/ENCFF141DVW/@@download/ENCFF141DVW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF802NYF bigWig fold change over control ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF369UDW, ENCFF907RHN 2067541544 ENCODE Processing Pipeline d7450cc0478c2eae7bb76bd73c1da9b3 https://www.encodeproject.org/files/ENCFF802NYF/@@download/ENCFF802NYF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF218WER bigBed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF186ZMA 13304974 ENCODE Processing Pipeline 9d66634db22c78fbf7fcfb5398d16220 https://www.encodeproject.org/files/ENCFF218WER/@@download/ENCFF218WER.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF858ZWU bigBed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF141DVW 13321389 ENCODE Processing Pipeline 6982fafda5076e57c0339d55590152ee https://www.encodeproject.org/files/ENCFF858ZWU/@@download/ENCFF858ZWU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF186ZMA bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF255GSR 6921495 ENCODE Processing Pipeline b8830e0b821e0346e8af795bde9f86f4 https://www.encodeproject.org/files/ENCFF186ZMA/@@download/ENCFF186ZMA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF574VXM bigBed narrowPeak conservative idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF703NCN 105707 ENCODE Processing Pipeline 3a81b8897aa6410fc5eb7de8f0d82521 https://www.encodeproject.org/files/ENCFF574VXM/@@download/ENCFF574VXM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF015JYB bed narrowPeak optimal idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF014UVA, ENCFF047EYM, ENCFF186ZMA 245416 ENCODE Processing Pipeline f95859db9bc5562536d54bcc8c08e7b0 https://www.encodeproject.org/files/ENCFF015JYB/@@download/ENCFF015JYB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF318YNM bigBed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF884STA 13369666 ENCODE Processing Pipeline 9e4efe98c1181891bfd1e0e13f6a2d31 https://www.encodeproject.org/files/ENCFF318YNM/@@download/ENCFF318YNM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF782YQA bigBed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF014UVA 13364142 ENCODE Processing Pipeline 0712ef073261e2a1318c7609809ba56b https://www.encodeproject.org/files/ENCFF782YQA/@@download/ENCFF782YQA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF242YFQ bigBed narrowPeak conservative idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF924GTR 105607 ENCODE Processing Pipeline 632dfe947cf6dbdf8569491dae3bff6c https://www.encodeproject.org/files/ENCFF242YFQ/@@download/ENCFF242YFQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF023BIN bed narrowPeak optimal idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF102OLT, ENCFF141DVW, ENCFF419RSJ, ENCFF884STA 246102 ENCODE Processing Pipeline 6cbe140709878373deb7068ac7bd04c2 https://www.encodeproject.org/files/ENCFF023BIN/@@download/ENCFF023BIN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF884STA bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF369UDW, ENCFF907RHN 7204571 ENCODE Processing Pipeline 0d4020e64a0098706387d7a9fd6f447e https://www.encodeproject.org/files/ENCFF884STA/@@download/ENCFF884STA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF313MTY bigBed narrowPeak optimal idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF015JYB 514795 ENCODE Processing Pipeline f055cb60c862e9c0e4ab3c5700b498be https://www.encodeproject.org/files/ENCFF313MTY/@@download/ENCFF313MTY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF924GTR bed narrowPeak conservative idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF102OLT, ENCFF141DVW, ENCFF419RSJ, ENCFF884STA 28236 ENCODE Processing Pipeline cf9221e064455d0a46a18302634f915b https://www.encodeproject.org/files/ENCFF924GTR/@@download/ENCFF924GTR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF142HYC bigBed narrowPeak optimal idr thresholded peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF023BIN 517307 ENCODE Processing Pipeline 37ffde6b3d005d25ec2a79c253b2d350 https://www.encodeproject.org/files/ENCFF142HYC/@@download/ENCFF142HYC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF000NNY bam alignments ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NOM 1423008155 Richard Myers, HAIB ec085af9afcb3971c9114585050a7c22 https://www.encodeproject.org/files/ENCFF000NNY/@@download/ENCFF000NNY.bam hg19 released biological replicates with identical biosample ENCFF000NOA bam alignments ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NOS 2080893374 Richard Myers, HAIB 9470cd4fc9606c84d7aa539aa209d20a https://www.encodeproject.org/files/ENCFF000NOA/@@download/ENCFF000NOA.bam hg19 released biological replicates with identical biosample ENCFF000NOB bigBed broadPeak peaks ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVF 215522 Richard Myers, HAIB eb36f30716778a6aa6544057cf6bf05e https://www.encodeproject.org/files/ENCFF000NOB/@@download/ENCFF000NOB.bigBed hg19 released biological replicates with identical biosample ENCFF000NOC bigBed broadPeak peaks ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVG 251569 Richard Myers, HAIB 4e50ba48955a0f68651c0c4ea23f42e6 https://www.encodeproject.org/files/ENCFF000NOC/@@download/ENCFF000NOC.bigBed hg19 released biological replicates with identical biosample ENCFF000NOE bigWig raw signal ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 90283241 Richard Myers, HAIB 3907f2ffae4dd862ac1abe60bde7d9b8 https://www.encodeproject.org/files/ENCFF000NOE/@@download/ENCFF000NOE.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NOF bigWig raw signal ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 242931787 Richard Myers, HAIB 2e06f4f955a858712ece0f170d8912ab https://www.encodeproject.org/files/ENCFF000NOF/@@download/ENCFF000NOF.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NOM fastq reads ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1568027036 Richard Myers, HAIB b7edf4c34437a29d25dbd95d788a9d1b https://www.encodeproject.org/files/ENCFF000NOM/@@download/ENCFF000NOM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NOS fastq reads ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2111700475 Richard Myers, HAIB 33ff39d3af49f966fd0889ae060b6fa2 https://www.encodeproject.org/files/ENCFF000NOS/@@download/ENCFF000NOS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TVF bed broadPeak peaks ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 115935 Richard Myers, HAIB ad063dd19645ff78e44e411e9b997f15 https://www.encodeproject.org/files/ENCFF001TVF/@@download/ENCFF001TVF.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVG bed broadPeak peaks ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 140843 Richard Myers, HAIB 91ec7256f27fc72b966f0b5498c871a3 https://www.encodeproject.org/files/ENCFF001TVG/@@download/ENCFF001TVG.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF073GNS fastq reads ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF975DHQ 3557978967 Michael Snyder, Stanford 0cfe2176d3b9b6aada79ad5e5627f914 SRA:SRR6213017 https://www.encodeproject.org/files/ENCFF073GNS/@@download/ENCFF073GNS.fastq.gz Illumina HiSeq 4000 /files/ENCFF758XTS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF975DHQ fastq reads ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF073GNS 4037086681 Michael Snyder, Stanford f75901de0775d79711573efe4baba2ed SRA:SRR6213017 https://www.encodeproject.org/files/ENCFF975DHQ/@@download/ENCFF975DHQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF345SUH/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF616PBI bam unfiltered alignments ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF073GNS, ENCFF807MUK, ENCFF975DHQ 7051858901 ENCODE Processing Pipeline 2092c81bb1c7e3d616f441d788ea6e76 https://www.encodeproject.org/files/ENCFF616PBI/@@download/ENCFF616PBI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF776TTY bam unfiltered alignments ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF073GNS, ENCFF643CGH, ENCFF975DHQ 7059985306 ENCODE Processing Pipeline bbe1a27bdb42bc44d5e95cae950577ae https://www.encodeproject.org/files/ENCFF776TTY/@@download/ENCFF776TTY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF067YAB bam alignments ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF073GNS, ENCFF643CGH, ENCFF975DHQ 5345679842 ENCODE Processing Pipeline cdc55a76ec1c736a527889bb382dd666 https://www.encodeproject.org/files/ENCFF067YAB/@@download/ENCFF067YAB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF247KXK bam alignments ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF073GNS, ENCFF807MUK, ENCFF975DHQ 5334536698 ENCODE Processing Pipeline b15f096538dcb58077750e1aac2df707 https://www.encodeproject.org/files/ENCFF247KXK/@@download/ENCFF247KXK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF736ZRG bigWig signal p-value ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF067YAB, ENCFF484QUN 1844292708 ENCODE Processing Pipeline 0ea365125edaf4ee01df88331df397e0 https://www.encodeproject.org/files/ENCFF736ZRG/@@download/ENCFF736ZRG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF163DFV bigWig signal p-value ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF247KXK, ENCFF486FYK 1872971084 ENCODE Processing Pipeline 168e9ec6f067529ac2224eadf79bdbb0 https://www.encodeproject.org/files/ENCFF163DFV/@@download/ENCFF163DFV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF405MZO bigWig fold change over control ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF067YAB, ENCFF484QUN 1807370193 ENCODE Processing Pipeline eac9a5eb72ba59f0e4ca9c7ab5722138 https://www.encodeproject.org/files/ENCFF405MZO/@@download/ENCFF405MZO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF865RPA bigWig fold change over control ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF247KXK, ENCFF486FYK 1828746119 ENCODE Processing Pipeline 58599a7b08d2e953d198a57a73ddcf0f https://www.encodeproject.org/files/ENCFF865RPA/@@download/ENCFF865RPA.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF252YMA bed narrowPeak peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF247KXK, ENCFF486FYK 6529511 ENCODE Processing Pipeline a7c8a47b0e7557ae768bef002cb63b5a https://www.encodeproject.org/files/ENCFF252YMA/@@download/ENCFF252YMA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF991SQZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF252YMA 138540 ENCODE Processing Pipeline 0cc02a8533becd7f8cac8e9e931bb2b0 https://www.encodeproject.org/files/ENCFF991SQZ/@@download/ENCFF991SQZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF143IDZ bigBed narrowPeak peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF252YMA 11874412 ENCODE Processing Pipeline eb183ad6d25e9e1f68ef9edc6baba946 https://www.encodeproject.org/files/ENCFF143IDZ/@@download/ENCFF143IDZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF442URG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF991SQZ 313523 ENCODE Processing Pipeline fb3753130498a1a6f0085c602924dfb6 https://www.encodeproject.org/files/ENCFF442URG/@@download/ENCFF442URG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF923GAD bed narrowPeak peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF067YAB, ENCFF484QUN 6546146 ENCODE Processing Pipeline c85348e1f5399f1436e92069f6f7656d https://www.encodeproject.org/files/ENCFF923GAD/@@download/ENCFF923GAD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF162DOW bigBed narrowPeak peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF923GAD 11903634 ENCODE Processing Pipeline db79948217ada0d30c3d6284d4d80dc3 https://www.encodeproject.org/files/ENCFF162DOW/@@download/ENCFF162DOW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF253ZPF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF379SGB 317223 ENCODE Processing Pipeline f6d099949130f7c9d1692708205f68c2 https://www.encodeproject.org/files/ENCFF253ZPF/@@download/ENCFF253ZPF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF379SGB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF419RSJ, ENCFF923GAD 140603 ENCODE Processing Pipeline 5bc9194a00c1384a37c9f4797199cc1b https://www.encodeproject.org/files/ENCFF379SGB/@@download/ENCFF379SGB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF024GAM bam unfiltered alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 100 ENCFF158FFU, ENCFF646AFJ, ENCFF807MUK 4959831929 ENCODE Processing Pipeline 4dc2c0ff617935d70a77696b1bc7b28b https://www.encodeproject.org/files/ENCFF024GAM/@@download/ENCFF024GAM.bam hg19 released borderline replicate concordance ENCFF729PTE bam unfiltered alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 100 ENCFF807MUK, ENCFF911VAQ, ENCFF993ZYN 4819599245 ENCODE Processing Pipeline 7db3657ff866afc98ed9274f1ffb8e6a https://www.encodeproject.org/files/ENCFF729PTE/@@download/ENCFF729PTE.bam hg19 released borderline replicate concordance ENCFF158FFU fastq reads ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF646AFJ 2219106509 Michael Snyder, Stanford 5ceeff303c29a1c4ee3694e008a273ad SRA:SRR5111572 https://www.encodeproject.org/files/ENCFF158FFU/@@download/ENCFF158FFU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF646AFJ fastq reads ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF158FFU 2281002061 Michael Snyder, Stanford ff78db3d6d86e668cdf1b2515933e2cf SRA:SRR5111572 https://www.encodeproject.org/files/ENCFF646AFJ/@@download/ENCFF646AFJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF993ZYN fastq reads ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF911VAQ 2208824989 Michael Snyder, Stanford c551c782f88484669da36fa3246a273a SRA:SRR5111571 https://www.encodeproject.org/files/ENCFF993ZYN/@@download/ENCFF993ZYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF911VAQ fastq reads ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF993ZYN 2128314169 Michael Snyder, Stanford 4ef18c09483febd21210761b635c7491 SRA:SRR5111571 https://www.encodeproject.org/files/ENCFF911VAQ/@@download/ENCFF911VAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF985MWI bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 100 ENCFF158FFU, ENCFF646AFJ, ENCFF807MUK 4093992914 ENCODE Processing Pipeline cbb889c27743353c6b3eac5324505c19 https://www.encodeproject.org/files/ENCFF985MWI/@@download/ENCFF985MWI.bam hg19 released borderline replicate concordance ENCFF473JXX bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 100 ENCFF807MUK, ENCFF911VAQ, ENCFF993ZYN 4084540406 ENCODE Processing Pipeline 109ae014d715dc0902c613223aea9a99 https://www.encodeproject.org/files/ENCFF473JXX/@@download/ENCFF473JXX.bam hg19 released borderline replicate concordance ENCFF796KCH bigWig signal p-value ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF985MWI 1078158749 ENCODE Processing Pipeline 608f76a09254921057f3ca00b9377195 https://www.encodeproject.org/files/ENCFF796KCH/@@download/ENCFF796KCH.bigWig hg19 released borderline replicate concordance ENCFF463IVG bigWig fold change over control ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF985MWI 1101107157 ENCODE Processing Pipeline 61f9ff8d7d15757ad72205d20774db5f https://www.encodeproject.org/files/ENCFF463IVG/@@download/ENCFF463IVG.bigWig hg19 released borderline replicate concordance ENCFF348TXA bam unfiltered alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 100 ENCFF158FFU, ENCFF643CGH, ENCFF646AFJ 4968095700 ENCODE Processing Pipeline 62d17bea5e2a5c6218e34169ad81c3f6 https://www.encodeproject.org/files/ENCFF348TXA/@@download/ENCFF348TXA.bam GRCh38 released borderline replicate concordance ENCFF255ZLF bam unfiltered alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF911VAQ, ENCFF993ZYN 4829195964 ENCODE Processing Pipeline 163c685d471373ea8000706f50cd432f https://www.encodeproject.org/files/ENCFF255ZLF/@@download/ENCFF255ZLF.bam GRCh38 released borderline replicate concordance ENCFF025NCE bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF911VAQ, ENCFF993ZYN 4089622252 ENCODE Processing Pipeline ba5e3e67562e56bbc792a5829811cb07 https://www.encodeproject.org/files/ENCFF025NCE/@@download/ENCFF025NCE.bam GRCh38 released borderline replicate concordance ENCFF608ERF bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 100 ENCFF158FFU, ENCFF643CGH, ENCFF646AFJ 4099547411 ENCODE Processing Pipeline e5be674efc344ea0b43b29e9f3f33743 https://www.encodeproject.org/files/ENCFF608ERF/@@download/ENCFF608ERF.bam GRCh38 released borderline replicate concordance ENCFF863BGU bigWig signal p-value ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF025NCE, ENCFF426RDP 965926437 ENCODE Processing Pipeline 74edc2e36e3c7d259cc91b12a58c0968 https://www.encodeproject.org/files/ENCFF863BGU/@@download/ENCFF863BGU.bigWig GRCh38 released borderline replicate concordance ENCFF716LZK bigWig signal p-value ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF608ERF 920211894 ENCODE Processing Pipeline 82070dd2966dc2c709d243e0f1e791dd https://www.encodeproject.org/files/ENCFF716LZK/@@download/ENCFF716LZK.bigWig GRCh38 released borderline replicate concordance ENCFF440FOW bigWig signal p-value ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF025NCE, ENCFF291AFY, ENCFF426RDP, ENCFF608ERF 1797718529 ENCODE Processing Pipeline 655308eb0930a65b674b31fa2a393eb9 https://www.encodeproject.org/files/ENCFF440FOW/@@download/ENCFF440FOW.bigWig GRCh38 released borderline replicate concordance ENCFF180VXM bigWig fold change over control ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF025NCE, ENCFF426RDP 1034211694 ENCODE Processing Pipeline d70f4e76346d8385a8f594f0c8bbafd0 https://www.encodeproject.org/files/ENCFF180VXM/@@download/ENCFF180VXM.bigWig GRCh38 released borderline replicate concordance ENCFF898VWS bigWig fold change over control ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF608ERF 1102770340 ENCODE Processing Pipeline 2e1fe0569042bd0488888080bdd07d90 https://www.encodeproject.org/files/ENCFF898VWS/@@download/ENCFF898VWS.bigWig GRCh38 released borderline replicate concordance ENCFF195UTZ bigWig fold change over control ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF025NCE, ENCFF291AFY, ENCFF426RDP, ENCFF608ERF 1970982020 ENCODE Processing Pipeline 9ed6fb9dbdcfe8ffd1a5f1be671a997f https://www.encodeproject.org/files/ENCFF195UTZ/@@download/ENCFF195UTZ.bigWig GRCh38 released borderline replicate concordance ENCFF132ZNT bigBed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF920NXF 11181899 ENCODE Processing Pipeline 5b8b18be0a8bf85dd8a80c4900a26808 https://www.encodeproject.org/files/ENCFF132ZNT/@@download/ENCFF132ZNT.bigBed GRCh38 released borderline replicate concordance ENCFF135EXD bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF608ERF 5813143 ENCODE Processing Pipeline 517a16d7956af8b5d5cfaade8921d389 https://www.encodeproject.org/files/ENCFF135EXD/@@download/ENCFF135EXD.bed.gz GRCh38 released borderline replicate concordance ENCFF920NXF bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF025NCE, ENCFF426RDP 5967689 ENCODE Processing Pipeline f601a959fc4f24f86da131a2ce2acc5a https://www.encodeproject.org/files/ENCFF920NXF/@@download/ENCFF920NXF.bed.gz GRCh38 released borderline replicate concordance ENCFF549VFF bigBed narrowPeak conservative idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF384YHL 129159 ENCODE Processing Pipeline 2b2d3fb16f8c1df5a6d483c16737137a https://www.encodeproject.org/files/ENCFF549VFF/@@download/ENCFF549VFF.bigBed GRCh38 released borderline replicate concordance ENCFF719TSJ bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF025NCE, ENCFF291AFY, ENCFF426RDP, ENCFF608ERF 7035340 ENCODE Processing Pipeline d7b4b2c99e92ce80b8c4bb6d52d9b9e0 https://www.encodeproject.org/files/ENCFF719TSJ/@@download/ENCFF719TSJ.bed.gz GRCh38 released borderline replicate concordance ENCFF913UYV bigBed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF135EXD 11263855 ENCODE Processing Pipeline a94c9f2f9e73f8ab1176972adf0d9310 https://www.encodeproject.org/files/ENCFF913UYV/@@download/ENCFF913UYV.bigBed GRCh38 released borderline replicate concordance ENCFF702QIJ bigBed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF719TSJ 11180820 ENCODE Processing Pipeline 79aafc003ec502cf691738aa9d7256c8 https://www.encodeproject.org/files/ENCFF702QIJ/@@download/ENCFF702QIJ.bigBed GRCh38 released borderline replicate concordance ENCFF083AZM bed narrowPeak optimal idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF135EXD, ENCFF419RSJ, ENCFF719TSJ, ENCFF920NXF 83073 ENCODE Processing Pipeline 309de1dcaf93091600635d9a08bdfaf2 https://www.encodeproject.org/files/ENCFF083AZM/@@download/ENCFF083AZM.bed.gz GRCh38 released borderline replicate concordance ENCFF384YHL bed narrowPeak conservative idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF135EXD, ENCFF419RSJ, ENCFF719TSJ, ENCFF920NXF 35148 ENCODE Processing Pipeline f36c8433b5af4b558297aa707ec4f6fa https://www.encodeproject.org/files/ENCFF384YHL/@@download/ENCFF384YHL.bed.gz GRCh38 released borderline replicate concordance ENCFF668JOA bigBed narrowPeak optimal idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF083AZM 209138 ENCODE Processing Pipeline e0c65f0e01b48490de5a39d2566634a7 https://www.encodeproject.org/files/ENCFF668JOA/@@download/ENCFF668JOA.bigBed GRCh38 released borderline replicate concordance ENCFF660HYT bigWig signal p-value ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF473JXX, ENCFF583FAG 900194036 ENCODE Processing Pipeline c9a50ad99a99d90509bdb712d04c0a2f https://www.encodeproject.org/files/ENCFF660HYT/@@download/ENCFF660HYT.bigWig hg19 released borderline replicate concordance ENCFF003FHT bigBed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF402AKR 11239658 ENCODE Processing Pipeline 3b2ee663b2437df023395162bc3cc510 https://www.encodeproject.org/files/ENCFF003FHT/@@download/ENCFF003FHT.bigBed hg19 released borderline replicate concordance ENCFF434NPI bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF473JXX, ENCFF583FAG 5959233 ENCODE Processing Pipeline 351e46fb7b1dfcaff57caf3fe6d3ffa7 https://www.encodeproject.org/files/ENCFF434NPI/@@download/ENCFF434NPI.bed.gz hg19 released borderline replicate concordance ENCFF402AKR bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF985MWI 5805742 ENCODE Processing Pipeline 7be640e4784d373a19992506b11363e1 https://www.encodeproject.org/files/ENCFF402AKR/@@download/ENCFF402AKR.bed.gz hg19 released borderline replicate concordance ENCFF123HMV bigBed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF257ALC 11160803 ENCODE Processing Pipeline 3726a2408fdd1327ad6b9a1f5095d565 https://www.encodeproject.org/files/ENCFF123HMV/@@download/ENCFF123HMV.bigBed hg19 released borderline replicate concordance ENCFF949UKC bigWig signal p-value ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF473JXX, ENCFF583FAG, ENCFF985MWI 1902352856 ENCODE Processing Pipeline e5219e9233da4a4d60881dc389ccf821 https://www.encodeproject.org/files/ENCFF949UKC/@@download/ENCFF949UKC.bigWig hg19 released borderline replicate concordance ENCFF440AEV bed narrowPeak conservative idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF257ALC, ENCFF402AKR, ENCFF434NPI 32322 ENCODE Processing Pipeline 4f20cdecc054b33a82811ca3fa26fbbe https://www.encodeproject.org/files/ENCFF440AEV/@@download/ENCFF440AEV.bed.gz hg19 released borderline replicate concordance ENCFF423QVG bigWig fold change over control ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF473JXX, ENCFF583FAG 1004972736 ENCODE Processing Pipeline 40752bd0cc84d544d130a8517c047200 https://www.encodeproject.org/files/ENCFF423QVG/@@download/ENCFF423QVG.bigWig hg19 released borderline replicate concordance ENCFF708FMD bigWig fold change over control ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF473JXX, ENCFF583FAG, ENCFF985MWI 1952957808 ENCODE Processing Pipeline bc3c76a70d314ca24503fdfd5b850c1f https://www.encodeproject.org/files/ENCFF708FMD/@@download/ENCFF708FMD.bigWig hg19 released borderline replicate concordance ENCFF257ALC bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF473JXX, ENCFF583FAG, ENCFF985MWI 7026045 ENCODE Processing Pipeline db10f7bb31ee2e9933ccc7c5f5e299b3 https://www.encodeproject.org/files/ENCFF257ALC/@@download/ENCFF257ALC.bed.gz hg19 released borderline replicate concordance ENCFF513QSP bigBed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF434NPI 11160545 ENCODE Processing Pipeline f57607ae06010097ef4c839b325c2dcd https://www.encodeproject.org/files/ENCFF513QSP/@@download/ENCFF513QSP.bigBed hg19 released borderline replicate concordance ENCFF017PFM bigBed narrowPeak conservative idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF440AEV 122404 ENCODE Processing Pipeline e9048967f82906b5e85609f189eb4d68 https://www.encodeproject.org/files/ENCFF017PFM/@@download/ENCFF017PFM.bigBed hg19 released borderline replicate concordance ENCFF527ALV bed narrowPeak optimal idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF257ALC, ENCFF402AKR, ENCFF434NPI 78206 ENCODE Processing Pipeline cb10f87e27dba429bc70867de4e6c85a https://www.encodeproject.org/files/ENCFF527ALV/@@download/ENCFF527ALV.bed.gz hg19 released borderline replicate concordance ENCFF519LSJ bigBed narrowPeak optimal idr thresholded peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF527ALV 198291 ENCODE Processing Pipeline 4147d7e59b30836eed48bee3cecbae92 https://www.encodeproject.org/files/ENCFF519LSJ/@@download/ENCFF519LSJ.bigBed hg19 released borderline replicate concordance ENCFF908JVL fastq reads ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF342RDH 2268136932 Michael Snyder, Stanford a5f10740a88e72b55867c49adc7adfbb SRA:SRR5111982 https://www.encodeproject.org/files/ENCFF908JVL/@@download/ENCFF908JVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF822SXZ fastq reads ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF558BIU 2652555089 Michael Snyder, Stanford 8b6872ed5b1dc3f8c5fbcfa99212733c SRA:SRR5111981 https://www.encodeproject.org/files/ENCFF822SXZ/@@download/ENCFF822SXZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF342RDH fastq reads ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF908JVL 2324761998 Michael Snyder, Stanford 67406d53ccffb86e77cb8397c5d6fbd4 SRA:SRR5111982 https://www.encodeproject.org/files/ENCFF342RDH/@@download/ENCFF342RDH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF558BIU fastq reads ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF822SXZ 2711547809 Michael Snyder, Stanford ddc88aa662e55a9566a98ffb44d31022 SRA:SRR5111981 https://www.encodeproject.org/files/ENCFF558BIU/@@download/ENCFF558BIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF985KQY bam unfiltered alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF558BIU, ENCFF807MUK, ENCFF822SXZ 5893011597 ENCODE Processing Pipeline e4ae7acab20c86b2aaf894967cd4e51a https://www.encodeproject.org/files/ENCFF985KQY/@@download/ENCFF985KQY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF290YMZ bam unfiltered alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF342RDH, ENCFF807MUK, ENCFF908JVL 5101047508 ENCODE Processing Pipeline bac5942b45c8d0a65b56c526ff4b1f38 https://www.encodeproject.org/files/ENCFF290YMZ/@@download/ENCFF290YMZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF255KBP bam unfiltered alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF342RDH, ENCFF643CGH, ENCFF908JVL 5107214445 ENCODE Processing Pipeline dd5398498fcbc6fff204cbc271208aa1 https://www.encodeproject.org/files/ENCFF255KBP/@@download/ENCFF255KBP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF736OHM bam unfiltered alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF558BIU, ENCFF643CGH, ENCFF822SXZ 5899395598 ENCODE Processing Pipeline 9ff1f6d837079587cd734c7a16802528 https://www.encodeproject.org/files/ENCFF736OHM/@@download/ENCFF736OHM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF614UDN bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF558BIU, ENCFF807MUK, ENCFF822SXZ 5069294781 ENCODE Processing Pipeline e5f613bc7e5a63ece10efe8b33cda304 https://www.encodeproject.org/files/ENCFF614UDN/@@download/ENCFF614UDN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF677ERR bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF342RDH, ENCFF807MUK, ENCFF908JVL 4429269113 ENCODE Processing Pipeline 5104d3c131460072f49259c959485ba7 https://www.encodeproject.org/files/ENCFF677ERR/@@download/ENCFF677ERR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF803DFJ bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF342RDH, ENCFF643CGH, ENCFF908JVL 4431395949 ENCODE Processing Pipeline df9c265397a9d16fd7c8b494f9995b65 https://www.encodeproject.org/files/ENCFF803DFJ/@@download/ENCFF803DFJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF995VXB bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF558BIU, ENCFF643CGH, ENCFF822SXZ 5072598667 ENCODE Processing Pipeline 0a5719890c588f9c148ffa5ed0131346 https://www.encodeproject.org/files/ENCFF995VXB/@@download/ENCFF995VXB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF833TNL bigWig signal p-value ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF677ERR 1249993831 ENCODE Processing Pipeline 42221db53bbbc5d82d5332e57f01bdb6 https://www.encodeproject.org/files/ENCFF833TNL/@@download/ENCFF833TNL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF077HZG bigWig signal p-value ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF614UDN 1452244250 ENCODE Processing Pipeline 2ac3bbb1c511954fb43739726788311c https://www.encodeproject.org/files/ENCFF077HZG/@@download/ENCFF077HZG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF981XTI bigWig signal p-value ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF614UDN, ENCFF677ERR 2012316038 ENCODE Processing Pipeline 913e49980c4acf7e451cba970b16100a https://www.encodeproject.org/files/ENCFF981XTI/@@download/ENCFF981XTI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF112OZA bigWig fold change over control ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF677ERR 1418815254 ENCODE Processing Pipeline 92c9707f4d164311333184d05e4d553f https://www.encodeproject.org/files/ENCFF112OZA/@@download/ENCFF112OZA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF022MCE bigWig fold change over control ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF614UDN 1484639924 ENCODE Processing Pipeline c07582422aa8226bc1fc9585afdc0c53 https://www.encodeproject.org/files/ENCFF022MCE/@@download/ENCFF022MCE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF092QUS bigWig fold change over control ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF614UDN, ENCFF677ERR 2024386278 ENCODE Processing Pipeline b208d2b174502492fbfc2c57afc7832b https://www.encodeproject.org/files/ENCFF092QUS/@@download/ENCFF092QUS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF744ESZ bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF677ERR 6760818 ENCODE Processing Pipeline b6b71f6bee8ecd4cbb58831822f80802 https://www.encodeproject.org/files/ENCFF744ESZ/@@download/ENCFF744ESZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF501HHH bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF614UDN 6888803 ENCODE Processing Pipeline 102e8db0c265309d21785fda27d20f8c https://www.encodeproject.org/files/ENCFF501HHH/@@download/ENCFF501HHH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF890BSF bigBed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF744ESZ 13394691 ENCODE Processing Pipeline 2a314118be3374843613bd2c95be5e8a https://www.encodeproject.org/files/ENCFF890BSF/@@download/ENCFF890BSF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF497XPK bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF614UDN, ENCFF677ERR 7225208 ENCODE Processing Pipeline c5c07792c09742e7acbb2d46eac87e4b https://www.encodeproject.org/files/ENCFF497XPK/@@download/ENCFF497XPK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF269QHF bigBed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF501HHH 13328799 ENCODE Processing Pipeline 66f96a6899f24add5eadfdc791d17e3d https://www.encodeproject.org/files/ENCFF269QHF/@@download/ENCFF269QHF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF487QSV bigBed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF497XPK 13140368 ENCODE Processing Pipeline 52affdb8ba3a662305e59959ad21170e https://www.encodeproject.org/files/ENCFF487QSV/@@download/ENCFF487QSV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF440BHY bigBed narrowPeak conservative idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF150GKP 281558 ENCODE Processing Pipeline 72c4536b7f54bce854ea3db61a189517 https://www.encodeproject.org/files/ENCFF440BHY/@@download/ENCFF440BHY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF150GKP bed narrowPeak conservative idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF497XPK, ENCFF501HHH, ENCFF744ESZ 130400 ENCODE Processing Pipeline cae45c5d620b8dee0ff8dfc89fa3a260 https://www.encodeproject.org/files/ENCFF150GKP/@@download/ENCFF150GKP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF491HFW bed narrowPeak optimal idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF497XPK, ENCFF501HHH, ENCFF744ESZ 174579 ENCODE Processing Pipeline 5c3fe57f016c003f636ddcb5bc2875c1 https://www.encodeproject.org/files/ENCFF491HFW/@@download/ENCFF491HFW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF226QUT bigBed narrowPeak optimal idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF491HFW 346248 ENCODE Processing Pipeline 94e18325d91b553dcf053f1a989b465e https://www.encodeproject.org/files/ENCFF226QUT/@@download/ENCFF226QUT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF331FKB bigWig signal p-value ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF803DFJ 1274424167 ENCODE Processing Pipeline f7685dfd65ebb8064e5eea2fe5554967 https://www.encodeproject.org/files/ENCFF331FKB/@@download/ENCFF331FKB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF897XPN bigWig signal p-value ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF995VXB 1280175423 ENCODE Processing Pipeline edc16e14c57042083e5db3cc6aad90cf https://www.encodeproject.org/files/ENCFF897XPN/@@download/ENCFF897XPN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF310OTL bigWig signal p-value ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF803DFJ, ENCFF995VXB 2029154842 ENCODE Processing Pipeline 96e5e7146154ba501190928a4f0f743e https://www.encodeproject.org/files/ENCFF310OTL/@@download/ENCFF310OTL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF259PGA bigWig fold change over control ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF803DFJ 1429304482 ENCODE Processing Pipeline 08a077ce5859b43ae2b0f134be820165 https://www.encodeproject.org/files/ENCFF259PGA/@@download/ENCFF259PGA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF102GXQ bigWig fold change over control ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF995VXB 1522978515 ENCODE Processing Pipeline e27203eca90ba4518544b78c9a1ccf8d https://www.encodeproject.org/files/ENCFF102GXQ/@@download/ENCFF102GXQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF204COR bigWig fold change over control ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF803DFJ, ENCFF995VXB 2042107103 ENCODE Processing Pipeline c596cf06e79a9012b53f3213b5a72518 https://www.encodeproject.org/files/ENCFF204COR/@@download/ENCFF204COR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF335IAV bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF803DFJ 6645168 ENCODE Processing Pipeline 4cb9a0605c2febb07251d0a35eaf2fd4 https://www.encodeproject.org/files/ENCFF335IAV/@@download/ENCFF335IAV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF247KYG bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF803DFJ, ENCFF995VXB 7207207 ENCODE Processing Pipeline 03788930efa1bf18a4041a9ad0f119fd https://www.encodeproject.org/files/ENCFF247KYG/@@download/ENCFF247KYG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF180ELT bigBed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF335IAV 13405067 ENCODE Processing Pipeline d3144ddce04c3de92e880340c7cafcf9 https://www.encodeproject.org/files/ENCFF180ELT/@@download/ENCFF180ELT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF529CAD bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF995VXB 6764441 ENCODE Processing Pipeline abb8d3fb237bb332dfb1e69d019132f0 https://www.encodeproject.org/files/ENCFF529CAD/@@download/ENCFF529CAD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF293MYD bigBed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF529CAD 13338816 ENCODE Processing Pipeline cf2dfd2af12b10a57ad7f4e1e10def4a https://www.encodeproject.org/files/ENCFF293MYD/@@download/ENCFF293MYD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF412GHT bigBed narrowPeak conservative idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF907JTW 276861 ENCODE Processing Pipeline 64e6c821af171e70c38c81c568b0e1f1 https://www.encodeproject.org/files/ENCFF412GHT/@@download/ENCFF412GHT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF907JTW bed narrowPeak conservative idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF247KYG, ENCFF335IAV, ENCFF419RSJ, ENCFF529CAD 126518 ENCODE Processing Pipeline 07c0e651c9c93e9daf1c812e908fb0e1 https://www.encodeproject.org/files/ENCFF907JTW/@@download/ENCFF907JTW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF788PLR bigBed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF247KYG 13151347 ENCODE Processing Pipeline 43703c660a36f7f6fc979639c0960d5d https://www.encodeproject.org/files/ENCFF788PLR/@@download/ENCFF788PLR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF312JKD bed narrowPeak optimal idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF247KYG, ENCFF335IAV, ENCFF419RSJ, ENCFF529CAD 172647 ENCODE Processing Pipeline 55f889a5f3a0f63f269dedf6bbb58637 https://www.encodeproject.org/files/ENCFF312JKD/@@download/ENCFF312JKD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF196PWN bigBed narrowPeak optimal idr thresholded peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF312JKD 344623 ENCODE Processing Pipeline 04e3e6d4a69c236a8c5c4381b7f09755 https://www.encodeproject.org/files/ENCFF196PWN/@@download/ENCFF196PWN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF002EVY fastq reads ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 1 36 single-ended 917716028 Michael Snyder, Stanford c0d78939f99bc08719bbcc4c8e6a1414 SRA:SRR5112398 https://www.encodeproject.org/files/ENCFF002EVY/@@download/ENCFF002EVY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF584LXI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF002EWB fastq reads ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 1 36 single-ended 692212223 Michael Snyder, Stanford 7ad4c122bede9021bad54db61972e429 SRA:SRR5112399 https://www.encodeproject.org/files/ENCFF002EWB/@@download/ENCFF002EWB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF492DKQ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF616BAZ bam unfiltered alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 36 ENCFF002EWB, ENCFF643CGH 941322423 ENCODE Processing Pipeline f0d7823cd45772c4349f8adde0f9ddc7 https://www.encodeproject.org/files/ENCFF616BAZ/@@download/ENCFF616BAZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF195AOS bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 36 ENCFF002EVY, ENCFF643CGH 646073618 ENCODE Processing Pipeline e54783eef87b57f5748ba7c8556d63ed https://www.encodeproject.org/files/ENCFF195AOS/@@download/ENCFF195AOS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF657UEE bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 36 ENCFF002EWB, ENCFF643CGH 539172798 ENCODE Processing Pipeline b7575daa6f30f24d6c6e49c96fe7afb8 https://www.encodeproject.org/files/ENCFF657UEE/@@download/ENCFF657UEE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF013WBK bam unfiltered alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 36 ENCFF002EVY, ENCFF643CGH 1053926413 ENCODE Processing Pipeline 6044aa85ce23c6f901e1997631c2e1ec https://www.encodeproject.org/files/ENCFF013WBK/@@download/ENCFF013WBK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF432MHC bam unfiltered alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 36 ENCFF002EWB, ENCFF807MUK 937415124 ENCODE Processing Pipeline 78cc406b9f016799a183e6fb51d328a3 https://www.encodeproject.org/files/ENCFF432MHC/@@download/ENCFF432MHC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF107TYU bam unfiltered alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 36 ENCFF002EVY, ENCFF807MUK 1049902878 ENCODE Processing Pipeline 034acf677c13fa5c554c52b09a3ef627 https://www.encodeproject.org/files/ENCFF107TYU/@@download/ENCFF107TYU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF140IKC bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 36 ENCFF002EVY, ENCFF807MUK 646419280 ENCODE Processing Pipeline 24d6d3d455541a4a2ed935d3e2596445 https://www.encodeproject.org/files/ENCFF140IKC/@@download/ENCFF140IKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF975QZH bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 36 ENCFF002EWB, ENCFF807MUK 539503794 ENCODE Processing Pipeline 84d646a6382daa7d9ee7f2b3799dc971 https://www.encodeproject.org/files/ENCFF975QZH/@@download/ENCFF975QZH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF774NMN bigWig signal p-value ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF140IKC, ENCFF880YHS 475614391 ENCODE Processing Pipeline 84d674f37c23d9b799ceace4cc644135 https://www.encodeproject.org/files/ENCFF774NMN/@@download/ENCFF774NMN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF551KOG bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF140IKC, ENCFF880YHS 5219246 ENCODE Processing Pipeline 9c2746280f4a60fc37a7786596929e92 https://www.encodeproject.org/files/ENCFF551KOG/@@download/ENCFF551KOG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF603HVK bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF140IKC, ENCFF485QJI, ENCFF880YHS, ENCFF975QZH 6040739 ENCODE Processing Pipeline 2b0579268a91de01d78562ad73f17042 https://www.encodeproject.org/files/ENCFF603HVK/@@download/ENCFF603HVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF050URY bigBed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF925XIR 10882760 ENCODE Processing Pipeline e1887dad3b0d7058b29767930718a4f3 https://www.encodeproject.org/files/ENCFF050URY/@@download/ENCFF050URY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF007XGJ bigBed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF603HVK 11826251 ENCODE Processing Pipeline 35ba3285213fa56f49aa653886020840 https://www.encodeproject.org/files/ENCFF007XGJ/@@download/ENCFF007XGJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF376MJT bigWig signal p-value ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF485QJI, ENCFF975QZH 516674143 ENCODE Processing Pipeline 961bb06a323cbac05bd3cc95a91cf6ad https://www.encodeproject.org/files/ENCFF376MJT/@@download/ENCFF376MJT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF868TWS bigWig fold change over control ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF140IKC, ENCFF880YHS 390338708 ENCODE Processing Pipeline 6a17df4326e027790828300d30b99639 https://www.encodeproject.org/files/ENCFF868TWS/@@download/ENCFF868TWS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF157KQU bigWig fold change over control ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF140IKC, ENCFF485QJI, ENCFF880YHS, ENCFF975QZH 840064783 ENCODE Processing Pipeline 984ba8b7a9cddf1b8631a3d84cf990be https://www.encodeproject.org/files/ENCFF157KQU/@@download/ENCFF157KQU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF925XIR bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF485QJI, ENCFF975QZH 4472050 ENCODE Processing Pipeline 4dd61c0397b4dcc441c63eacd2ca4078 https://www.encodeproject.org/files/ENCFF925XIR/@@download/ENCFF925XIR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF969NCS bigWig signal p-value ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF140IKC, ENCFF485QJI, ENCFF880YHS, ENCFF975QZH 947485045 ENCODE Processing Pipeline 8233cd8480a673de407359b27da88f7f https://www.encodeproject.org/files/ENCFF969NCS/@@download/ENCFF969NCS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF757MUA bigWig fold change over control ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF485QJI, ENCFF975QZH 325766450 ENCODE Processing Pipeline 4fa4da2b3335f21fadf3efa32a066445 https://www.encodeproject.org/files/ENCFF757MUA/@@download/ENCFF757MUA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF518MCC bigBed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF551KOG 11334928 ENCODE Processing Pipeline 147c213329f18ee9e75417099b9203cd https://www.encodeproject.org/files/ENCFF518MCC/@@download/ENCFF518MCC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF680BSR bed narrowPeak conservative idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF001TDO, ENCFF551KOG, ENCFF603HVK, ENCFF925XIR 509735 ENCODE Processing Pipeline 57ab0af2f09331ce41ca81702ccfceec https://www.encodeproject.org/files/ENCFF680BSR/@@download/ENCFF680BSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF116RLU bed narrowPeak optimal idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF001TDO, ENCFF551KOG, ENCFF603HVK, ENCFF925XIR 561934 ENCODE Processing Pipeline df3a18ae7973dc03e024e724ccaf3c13 https://www.encodeproject.org/files/ENCFF116RLU/@@download/ENCFF116RLU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF133AWY bigBed narrowPeak optimal idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF116RLU 1090066 ENCODE Processing Pipeline 7fad381bb9a8309d581c2cba4ae5bf0e https://www.encodeproject.org/files/ENCFF133AWY/@@download/ENCFF133AWY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF698CKO bigBed narrowPeak conservative idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF680BSR 1018920 ENCODE Processing Pipeline ac8bad2f494928908b197978b8a1c138 https://www.encodeproject.org/files/ENCFF698CKO/@@download/ENCFF698CKO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF940IWY bigWig signal p-value ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF195AOS, ENCFF195PNZ 526065242 ENCODE Processing Pipeline 982f5a532c6581cc2673d9d039b888c4 https://www.encodeproject.org/files/ENCFF940IWY/@@download/ENCFF940IWY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF119TKH bigWig signal p-value ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF657UEE, ENCFF928IDQ 474372939 ENCODE Processing Pipeline e27da41009f35bba46b4993f9338d91d https://www.encodeproject.org/files/ENCFF119TKH/@@download/ENCFF119TKH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF531JPI bigWig signal p-value ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF195AOS, ENCFF195PNZ, ENCFF657UEE, ENCFF928IDQ 984101860 ENCODE Processing Pipeline d9756c77410159075745f4f64a320f8b https://www.encodeproject.org/files/ENCFF531JPI/@@download/ENCFF531JPI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF046SUU bigWig fold change over control ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF195AOS, ENCFF195PNZ 389263999 ENCODE Processing Pipeline 91c793f4abfc7b3acb0fe86015a29451 https://www.encodeproject.org/files/ENCFF046SUU/@@download/ENCFF046SUU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF584YXE bigWig fold change over control ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF657UEE, ENCFF928IDQ 325097833 ENCODE Processing Pipeline 628ae2a33e7ce30574a83fc97d9eced1 https://www.encodeproject.org/files/ENCFF584YXE/@@download/ENCFF584YXE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF889ZOU bigWig fold change over control ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF195AOS, ENCFF195PNZ, ENCFF657UEE, ENCFF928IDQ 838694590 ENCODE Processing Pipeline eca16f7a703522308bd7b48d5d45d74d https://www.encodeproject.org/files/ENCFF889ZOU/@@download/ENCFF889ZOU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF838FOF bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF195AOS, ENCFF195PNZ 5052593 ENCODE Processing Pipeline 9f5b54362aca329b54f2d383ae7282d7 https://www.encodeproject.org/files/ENCFF838FOF/@@download/ENCFF838FOF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF524JQZ bigBed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF838FOF 11203635 ENCODE Processing Pipeline 0c0a9a2962a1cf447a1a2fcc004a04b7 https://www.encodeproject.org/files/ENCFF524JQZ/@@download/ENCFF524JQZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF207VFS bigBed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF253WPJ 10670505 ENCODE Processing Pipeline e14543e03af84817d321f96a47e05ecd https://www.encodeproject.org/files/ENCFF207VFS/@@download/ENCFF207VFS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF253WPJ bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 ENCFF657UEE, ENCFF928IDQ 4336481 ENCODE Processing Pipeline d9bbb21444d291eaef9b33c998660ef9 https://www.encodeproject.org/files/ENCFF253WPJ/@@download/ENCFF253WPJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF145TAH bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF195AOS, ENCFF195PNZ, ENCFF657UEE, ENCFF928IDQ 5852539 ENCODE Processing Pipeline ece1372f93bc1e7b3ef1bb27942ffed5 https://www.encodeproject.org/files/ENCFF145TAH/@@download/ENCFF145TAH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF694ASO bigBed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF145TAH 11793404 ENCODE Processing Pipeline 11d210f5b22c4a3da5085ed3e589a37f https://www.encodeproject.org/files/ENCFF694ASO/@@download/ENCFF694ASO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF050FSK bigBed narrowPeak optimal idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF380ZXB 1095808 ENCODE Processing Pipeline 0e019d1177004d88ef5b110bddc61eb4 https://www.encodeproject.org/files/ENCFF050FSK/@@download/ENCFF050FSK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF324FFQ bed narrowPeak conservative idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF145TAH, ENCFF253WPJ, ENCFF419RSJ, ENCFF838FOF 510885 ENCODE Processing Pipeline fb02ae4c02f6a181baa577708ef31830 https://www.encodeproject.org/files/ENCFF324FFQ/@@download/ENCFF324FFQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF249SFD bigBed narrowPeak conservative idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF324FFQ 1021032 ENCODE Processing Pipeline b49c29a1ea68210b7c650fffb0890e20 https://www.encodeproject.org/files/ENCFF249SFD/@@download/ENCFF249SFD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF380ZXB bed narrowPeak optimal idr thresholded peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1, 3 ENCFF145TAH, ENCFF253WPJ, ENCFF419RSJ, ENCFF838FOF 566064 ENCODE Processing Pipeline 971c29ec0b27278699ffa45b2400cff6 https://www.encodeproject.org/files/ENCFF380ZXB/@@download/ENCFF380ZXB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF741TKM fastq reads ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF605WDX 2809327260 Michael Snyder, Stanford b46c1f81c994ec5d85475994fc60b3fa SRA:SRR5111808 https://www.encodeproject.org/files/ENCFF741TKM/@@download/ENCFF741TKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF234GIA fastq reads ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF134EEH 2803930492 Michael Snyder, Stanford c9fe1162d58d492a3800d3a63a5532d7 SRA:SRR5111809 https://www.encodeproject.org/files/ENCFF234GIA/@@download/ENCFF234GIA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF134EEH fastq reads ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF234GIA 2878068612 Michael Snyder, Stanford 16be7a9fb88df1363795f4e1d7c868de SRA:SRR5111809 https://www.encodeproject.org/files/ENCFF134EEH/@@download/ENCFF134EEH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF605WDX fastq reads ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF741TKM 2881696379 Michael Snyder, Stanford 33c0522c73a8b69e8c9b28f6cf18a804 SRA:SRR5111808 https://www.encodeproject.org/files/ENCFF605WDX/@@download/ENCFF605WDX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF250RNV bam unfiltered alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF134EEH, ENCFF234GIA, ENCFF807MUK 6132087204 ENCODE Processing Pipeline 530cf426241b348255f195ab21a6e067 https://www.encodeproject.org/files/ENCFF250RNV/@@download/ENCFF250RNV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF931HFR bam unfiltered alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF605WDX, ENCFF741TKM, ENCFF807MUK 6141264628 ENCODE Processing Pipeline 03b8094add832445431e044ac3d06d09 https://www.encodeproject.org/files/ENCFF931HFR/@@download/ENCFF931HFR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF943JWH bam unfiltered alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF134EEH, ENCFF234GIA, ENCFF643CGH 6137982736 ENCODE Processing Pipeline bd39ef85ca30787e4326dd2261fef3d4 https://www.encodeproject.org/files/ENCFF943JWH/@@download/ENCFF943JWH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF697RSU bam unfiltered alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF605WDX, ENCFF643CGH, ENCFF741TKM 6147506570 ENCODE Processing Pipeline e1a4cd88215f578fe95f0efa4fe7075d https://www.encodeproject.org/files/ENCFF697RSU/@@download/ENCFF697RSU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF528XYJ bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF134EEH, ENCFF234GIA, ENCFF807MUK 5283227441 ENCODE Processing Pipeline 1c100ea67419628994659b73cb5a0bdf https://www.encodeproject.org/files/ENCFF528XYJ/@@download/ENCFF528XYJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF135MMH bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF605WDX, ENCFF643CGH, ENCFF741TKM 5348385620 ENCODE Processing Pipeline 68e5d16bdd8580a0268d79e5e27d94de https://www.encodeproject.org/files/ENCFF135MMH/@@download/ENCFF135MMH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF423BHL bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF605WDX, ENCFF741TKM, ENCFF807MUK 5346674062 ENCODE Processing Pipeline 93d0f8b65f1f00d70186f60df6a22dc3 https://www.encodeproject.org/files/ENCFF423BHL/@@download/ENCFF423BHL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF082UFQ bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF134EEH, ENCFF234GIA, ENCFF643CGH 5285243828 ENCODE Processing Pipeline 804360dead79845dd0166b384d0c92e4 https://www.encodeproject.org/files/ENCFF082UFQ/@@download/ENCFF082UFQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF979GFW bigWig signal p-value ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF423BHL 1453760705 ENCODE Processing Pipeline 7d990f8239857687eb40e18847a9a04b https://www.encodeproject.org/files/ENCFF979GFW/@@download/ENCFF979GFW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF652GHA bigWig signal p-value ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528XYJ 1293818090 ENCODE Processing Pipeline b14f0930f3f871c74a24adb6e509e6b1 https://www.encodeproject.org/files/ENCFF652GHA/@@download/ENCFF652GHA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF529PHH bigWig signal p-value ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF423BHL, ENCFF528XYJ 1961517093 ENCODE Processing Pipeline 1205d14c0045cf3ab076efe7c3a08b3a https://www.encodeproject.org/files/ENCFF529PHH/@@download/ENCFF529PHH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF841QNK bigWig fold change over control ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF423BHL 1513475401 ENCODE Processing Pipeline 5cd9448759a58a0c0c0a39a0598ffc9c https://www.encodeproject.org/files/ENCFF841QNK/@@download/ENCFF841QNK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF751UWO bigWig fold change over control ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528XYJ 1491888485 ENCODE Processing Pipeline c7800642201888761ef4a8b78f501e53 https://www.encodeproject.org/files/ENCFF751UWO/@@download/ENCFF751UWO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF032FRG bigWig fold change over control ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF423BHL, ENCFF528XYJ 2101706386 ENCODE Processing Pipeline f43106c19a58c9410b8db9e91bb2b256 https://www.encodeproject.org/files/ENCFF032FRG/@@download/ENCFF032FRG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF154VUH bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF423BHL 7099449 ENCODE Processing Pipeline c9dc52983e3ef962a9e31b7f074309d7 https://www.encodeproject.org/files/ENCFF154VUH/@@download/ENCFF154VUH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF785OWU bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528XYJ 7180910 ENCODE Processing Pipeline 4299f06defb42a55a909733df89b1596 https://www.encodeproject.org/files/ENCFF785OWU/@@download/ENCFF785OWU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF317MFR bigBed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF154VUH 13081908 ENCODE Processing Pipeline 18125926f407b8b6613276b139594ff0 https://www.encodeproject.org/files/ENCFF317MFR/@@download/ENCFF317MFR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF993SLF bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF423BHL, ENCFF528XYJ 7252270 ENCODE Processing Pipeline ece19210dea6b6952d8c7a30dbb46580 https://www.encodeproject.org/files/ENCFF993SLF/@@download/ENCFF993SLF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF719AEF bigBed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF785OWU 13124003 ENCODE Processing Pipeline 421a4975f4e133997a92ca04ac8ab811 https://www.encodeproject.org/files/ENCFF719AEF/@@download/ENCFF719AEF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF139JLK bigBed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF993SLF 13026597 ENCODE Processing Pipeline d3249e1d6c60376adb2236725769e0ee https://www.encodeproject.org/files/ENCFF139JLK/@@download/ENCFF139JLK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF910TAI bigBed narrowPeak conservative idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF643QTL 1955260 ENCODE Processing Pipeline 1d851ff63ce7f30671e93761098b28b9 https://www.encodeproject.org/files/ENCFF910TAI/@@download/ENCFF910TAI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF643QTL bed narrowPeak conservative idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF154VUH, ENCFF785OWU, ENCFF993SLF 886626 ENCODE Processing Pipeline 8a1f4eebce212e9730e568f8ee96530b https://www.encodeproject.org/files/ENCFF643QTL/@@download/ENCFF643QTL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF119WLE bed narrowPeak optimal idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF154VUH, ENCFF785OWU, ENCFF993SLF 923539 ENCODE Processing Pipeline 2c945f3726c417de80e3e44cffdf0605 https://www.encodeproject.org/files/ENCFF119WLE/@@download/ENCFF119WLE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF140DBD bigBed narrowPeak optimal idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF119WLE 2022648 ENCODE Processing Pipeline cd527757e50a2aadb040f34a881ada40 https://www.encodeproject.org/files/ENCFF140DBD/@@download/ENCFF140DBD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF396LQF bigWig signal p-value ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF135MMH 1593757749 ENCODE Processing Pipeline 91e4a335cb795286b6df2e865f804316 https://www.encodeproject.org/files/ENCFF396LQF/@@download/ENCFF396LQF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF403EBE bigWig signal p-value ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF082UFQ 1294627611 ENCODE Processing Pipeline b5a87462f0da9b473721285fadd25f45 https://www.encodeproject.org/files/ENCFF403EBE/@@download/ENCFF403EBE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF165TPG bigWig signal p-value ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF082UFQ, ENCFF135MMH 1957078226 ENCODE Processing Pipeline 78fd1b3c53ca348f66c62e67b01f7d2c https://www.encodeproject.org/files/ENCFF165TPG/@@download/ENCFF165TPG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF800SJC bigWig fold change over control ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF135MMH 1512027665 ENCODE Processing Pipeline d6384d79b0864cdc5546ceaa9681ae54 https://www.encodeproject.org/files/ENCFF800SJC/@@download/ENCFF800SJC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF697FBZ bigWig fold change over control ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF082UFQ 1508993944 ENCODE Processing Pipeline ea9530a8961fde63a2fa94ea78427864 https://www.encodeproject.org/files/ENCFF697FBZ/@@download/ENCFF697FBZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF558MRF bigWig fold change over control ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF082UFQ, ENCFF135MMH 2089618131 ENCODE Processing Pipeline 7b3dd2250009980038271d431b387013 https://www.encodeproject.org/files/ENCFF558MRF/@@download/ENCFF558MRF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF962LWA bigBed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF903KWI 13095694 ENCODE Processing Pipeline 6bd3c1cf3ea044087343c6cb769e6f1d https://www.encodeproject.org/files/ENCFF962LWA/@@download/ENCFF962LWA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF358XCE bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF082UFQ 7093371 ENCODE Processing Pipeline 1c23061adb8fab487df54714e8a25e68 https://www.encodeproject.org/files/ENCFF358XCE/@@download/ENCFF358XCE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF455VKV bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF082UFQ, ENCFF135MMH 7191753 ENCODE Processing Pipeline a22cd8e63062286596903f9d1b9cac90 https://www.encodeproject.org/files/ENCFF455VKV/@@download/ENCFF455VKV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF903KWI bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF135MMH 7073131 ENCODE Processing Pipeline fcdf05e0920f56158b6ef3db37c17b78 https://www.encodeproject.org/files/ENCFF903KWI/@@download/ENCFF903KWI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF253VBZ bigBed narrowPeak conservative idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF531XEK 1923854 ENCODE Processing Pipeline 37c6dd5f8e16e5e5ef1f27676a8235ea https://www.encodeproject.org/files/ENCFF253VBZ/@@download/ENCFF253VBZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF738UEI bigBed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF455VKV 12962913 ENCODE Processing Pipeline e155393ca9dffe3f9414dc9351927897 https://www.encodeproject.org/files/ENCFF738UEI/@@download/ENCFF738UEI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF906CSP bigBed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF358XCE 13071855 ENCODE Processing Pipeline cc2602738d3466dac54c7eef6f8c3593 https://www.encodeproject.org/files/ENCFF906CSP/@@download/ENCFF906CSP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF188IPX bigBed narrowPeak optimal idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF354EIQ 1986018 ENCODE Processing Pipeline fc6dc0329b9590392cecdda8d4dec5ea https://www.encodeproject.org/files/ENCFF188IPX/@@download/ENCFF188IPX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF531XEK bed narrowPeak conservative idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF358XCE, ENCFF419RSJ, ENCFF455VKV, ENCFF903KWI 864749 ENCODE Processing Pipeline 97de1d8fbb696aee3fd9754df8de73ef https://www.encodeproject.org/files/ENCFF531XEK/@@download/ENCFF531XEK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF354EIQ bed narrowPeak optimal idr thresholded peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF358XCE, ENCFF419RSJ, ENCFF455VKV, ENCFF903KWI 898219 ENCODE Processing Pipeline 78612e08d3833dafa2368c71e9132039 https://www.encodeproject.org/files/ENCFF354EIQ/@@download/ENCFF354EIQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF947SAR bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF807MUK 1214896093 ENCODE Processing Pipeline 60eab301f710abe6996d976975493d2b https://www.encodeproject.org/files/ENCFF947SAR/@@download/ENCFF947SAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF928UWV bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF807MUK 1087956119 ENCODE Processing Pipeline fb3d63b2f1ae753bba4a91c060f84caf https://www.encodeproject.org/files/ENCFF928UWV/@@download/ENCFF928UWV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF002EAM fastq reads ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 909297419 Michael Snyder, Stanford aa295e17af720c92960a15b0160b77a5 SRA:SRR6212847 https://www.encodeproject.org/files/ENCFF002EAM/@@download/ENCFF002EAM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, mild to moderate bottlenecking, low read depth ENCFF002EAU fastq reads ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 859151945 Michael Snyder, Stanford d4c59a6a41a4013ff85b282b85413b2a SRA:SRR6212848 https://www.encodeproject.org/files/ENCFF002EAU/@@download/ENCFF002EAU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, mild to moderate bottlenecking, low read depth ENCFF942MNR bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF807MUK 717215972 ENCODE Processing Pipeline c30723360c07f05b020df20d0ec755ba https://www.encodeproject.org/files/ENCFF942MNR/@@download/ENCFF942MNR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF278BHT bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF807MUK 803304959 ENCODE Processing Pipeline 9c3f3712b0bfc7b5508a3dd1e96b8150 https://www.encodeproject.org/files/ENCFF278BHT/@@download/ENCFF278BHT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF982LUH bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278BHT, ENCFF426WJH, ENCFF849LYY, ENCFF942MNR 1041894018 ENCODE Processing Pipeline cb4b7d2a0a8eee29222f11f977b1d28d https://www.encodeproject.org/files/ENCFF982LUH/@@download/ENCFF982LUH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF455ZPQ bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278BHT, ENCFF426WJH, ENCFF849LYY, ENCFF942MNR 978359166 ENCODE Processing Pipeline 59d3e26a171839c187ca8c3739e57105 https://www.encodeproject.org/files/ENCFF455ZPQ/@@download/ENCFF455ZPQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF175IME bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF643CGH 1091942709 ENCODE Processing Pipeline 949bb73810576b5f584a5934a17ae0f2 https://www.encodeproject.org/files/ENCFF175IME/@@download/ENCFF175IME.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF547IRX bam unfiltered alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF643CGH 1220481659 ENCODE Processing Pipeline 8773ce4f2339bed9df42d06baa38dca7 https://www.encodeproject.org/files/ENCFF547IRX/@@download/ENCFF547IRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF139IMF bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF643CGH 717344229 ENCODE Processing Pipeline 9d2e4a5af729fbefe064ede29d85bd93 https://www.encodeproject.org/files/ENCFF139IMF/@@download/ENCFF139IMF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF778CYP bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF643CGH 804594746 ENCODE Processing Pipeline b069cc620a56903082cb5db143aa10ca https://www.encodeproject.org/files/ENCFF778CYP/@@download/ENCFF778CYP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF982OBU bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF778CYP 548035056 ENCODE Processing Pipeline a7462995714695bd9383c3bb070f2786 https://www.encodeproject.org/files/ENCFF982OBU/@@download/ENCFF982OBU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF282FAY bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF139IMF, ENCFF872ERZ 560803645 ENCODE Processing Pipeline bd11989aebe4e975cd8c58bde3ec148a https://www.encodeproject.org/files/ENCFF282FAY/@@download/ENCFF282FAY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF922MAO bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF139IMF, ENCFF272DEZ, ENCFF778CYP, ENCFF872ERZ 1092308800 ENCODE Processing Pipeline 2d4de4186992135c9e9e848a713d333a https://www.encodeproject.org/files/ENCFF922MAO/@@download/ENCFF922MAO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF980EZZ bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF139IMF, ENCFF872ERZ 413073121 ENCODE Processing Pipeline d051a853d07f7a204538ec1ae816addf https://www.encodeproject.org/files/ENCFF980EZZ/@@download/ENCFF980EZZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF616TUE bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF778CYP 493156101 ENCODE Processing Pipeline 0735a24e59db8d27f04a6a98687288e4 https://www.encodeproject.org/files/ENCFF616TUE/@@download/ENCFF616TUE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF039XKQ bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF139IMF, ENCFF272DEZ, ENCFF778CYP, ENCFF872ERZ 998392032 ENCODE Processing Pipeline d7e5e8700ed384aee95691a78b95163f https://www.encodeproject.org/files/ENCFF039XKQ/@@download/ENCFF039XKQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF834YTO bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF139IMF, ENCFF872ERZ 4400293 ENCODE Processing Pipeline a29975ebb354f75dbce22788b1ba4f80 https://www.encodeproject.org/files/ENCFF834YTO/@@download/ENCFF834YTO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF187CPH bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF778CYP 4203325 ENCODE Processing Pipeline 1304b59151474d98b8e8b0ab58345750 https://www.encodeproject.org/files/ENCFF187CPH/@@download/ENCFF187CPH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF268TPX bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF695WYW 11648608 ENCODE Processing Pipeline fc1251af0b02a37d6cc9a014fcb97e30 https://www.encodeproject.org/files/ENCFF268TPX/@@download/ENCFF268TPX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF603BID bed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF187CPH, ENCFF419RSJ, ENCFF695WYW, ENCFF834YTO 52972 ENCODE Processing Pipeline cbc96d465bf981c3babae0da23db72fe https://www.encodeproject.org/files/ENCFF603BID/@@download/ENCFF603BID.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF694BFN bigBed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF603BID 142024 ENCODE Processing Pipeline ba967b70b48cafd027115bf4f1abf7b6 https://www.encodeproject.org/files/ENCFF694BFN/@@download/ENCFF694BFN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF695WYW bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF139IMF, ENCFF272DEZ, ENCFF778CYP, ENCFF872ERZ 5843948 ENCODE Processing Pipeline 6281380080e9f32f7a6088b2846b95e4 https://www.encodeproject.org/files/ENCFF695WYW/@@download/ENCFF695WYW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF354YJR bed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF187CPH, ENCFF419RSJ, ENCFF695WYW, ENCFF834YTO 43173 ENCODE Processing Pipeline 4bfebfed71a78ca223e5372badd617db https://www.encodeproject.org/files/ENCFF354YJR/@@download/ENCFF354YJR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF374GOP bigBed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF354YJR 127924 ENCODE Processing Pipeline 64a329e860a21cdf13c4e9698619ccaa https://www.encodeproject.org/files/ENCFF374GOP/@@download/ENCFF374GOP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF215PAU bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF834YTO 10884776 ENCODE Processing Pipeline 1c8567586d62606af73f2846016a651d https://www.encodeproject.org/files/ENCFF215PAU/@@download/ENCFF215PAU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF234JTX bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF187CPH 10919300 ENCODE Processing Pipeline c284e93ad6665e32556bb4d2f3fc3e5a https://www.encodeproject.org/files/ENCFF234JTX/@@download/ENCFF234JTX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF801LWT bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 427680541 ENCODE Processing Pipeline e4ba37205ce4b8bfe5c1f07fa16eb67f https://www.encodeproject.org/files/ENCFF801LWT/@@download/ENCFF801LWT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF499CSF bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 462790076 ENCODE Processing Pipeline 8e2301c5780b8a258a79d5dc796d2863 https://www.encodeproject.org/files/ENCFF499CSF/@@download/ENCFF499CSF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF211IQC bigWig signal p-value ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 525058962 ENCODE Processing Pipeline 713eb9d623ef836a7c5dbf3a09981297 https://www.encodeproject.org/files/ENCFF211IQC/@@download/ENCFF211IQC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF186WIO bigWig fold change over control ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 476612502 ENCODE Processing Pipeline cad9726ee4425baf24cb540f6c257cc9 https://www.encodeproject.org/files/ENCFF186WIO/@@download/ENCFF186WIO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF421XER bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF278BHT, ENCFF426WJH, ENCFF849LYY, ENCFF942MNR 5884452 ENCODE Processing Pipeline 79f33c447967edd7667d2bf493b2d4af https://www.encodeproject.org/files/ENCFF421XER/@@download/ENCFF421XER.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF308ZGG bed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF421XER, ENCFF607QZV, ENCFF618CLL 47623 ENCODE Processing Pipeline 855faa28674750c111acec0d56d5d750 https://www.encodeproject.org/files/ENCFF308ZGG/@@download/ENCFF308ZGG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF618CLL bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 4392046 ENCODE Processing Pipeline eb0e1c79aecca23f1c1ffbcabfb8c607 https://www.encodeproject.org/files/ENCFF618CLL/@@download/ENCFF618CLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF607QZV bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 4202263 ENCODE Processing Pipeline 35d64c561d4e98910bb0eb0599d6f9b4 https://www.encodeproject.org/files/ENCFF607QZV/@@download/ENCFF607QZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF578XJY bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF618CLL 10878305 ENCODE Processing Pipeline ac9202858f496a72f36c7cbcdb665bbd https://www.encodeproject.org/files/ENCFF578XJY/@@download/ENCFF578XJY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF487BOW bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF607QZV 10916070 ENCODE Processing Pipeline f3cea2f78a5dd91f210106dfdad9dc53 https://www.encodeproject.org/files/ENCFF487BOW/@@download/ENCFF487BOW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF569XVW bigBed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF421XER 11634155 ENCODE Processing Pipeline b64585c06ee83d444e70cb8a02d3a0a4 https://www.encodeproject.org/files/ENCFF569XVW/@@download/ENCFF569XVW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF662JYS bed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF421XER, ENCFF607QZV, ENCFF618CLL 38024 ENCODE Processing Pipeline f43584d0adf84ff001a0288425a3391b https://www.encodeproject.org/files/ENCFF662JYS/@@download/ENCFF662JYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF718CMI bigBed narrowPeak conservative idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF662JYS 121010 ENCODE Processing Pipeline a289fda28b148e4843a35ea79bfb2d34 https://www.encodeproject.org/files/ENCFF718CMI/@@download/ENCFF718CMI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF309TMP bigBed narrowPeak optimal idr thresholded peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF308ZGG 135016 ENCODE Processing Pipeline affb74770cef78150e84a69cb1f17b8e https://www.encodeproject.org/files/ENCFF309TMP/@@download/ENCFF309TMP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF251PNI fastq reads ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF860EDN 2255029931 Michael Snyder, Stanford 625361fd1187469f1cf054e6a3849662 SRA:SRR5111428 https://www.encodeproject.org/files/ENCFF251PNI/@@download/ENCFF251PNI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF898JXS fastq reads ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF040FWR 2183576406 Michael Snyder, Stanford 48d5cdef7c9036895f730428ba768b01 SRA:SRR5111427 https://www.encodeproject.org/files/ENCFF898JXS/@@download/ENCFF898JXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF040FWR fastq reads ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF898JXS 2210513665 Michael Snyder, Stanford f5d3897356a88e556f1119f8c2e7a833 SRA:SRR5111427 https://www.encodeproject.org/files/ENCFF040FWR/@@download/ENCFF040FWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF860EDN fastq reads ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF251PNI 2287387073 Michael Snyder, Stanford 793c459159201483e29df0b926edd99a SRA:SRR5111428 https://www.encodeproject.org/files/ENCFF860EDN/@@download/ENCFF860EDN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF775UJK bam unfiltered alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF040FWR, ENCFF643CGH, ENCFF898JXS 4754986761 ENCODE Processing Pipeline a1d594bea5a7a0d90b4343991c874582 https://www.encodeproject.org/files/ENCFF775UJK/@@download/ENCFF775UJK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF257MMT bam unfiltered alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF040FWR, ENCFF807MUK, ENCFF898JXS 4751547954 ENCODE Processing Pipeline b3987edf9a65e013e632775743a761a2 https://www.encodeproject.org/files/ENCFF257MMT/@@download/ENCFF257MMT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF046YUV bam unfiltered alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF251PNI, ENCFF643CGH, ENCFF860EDN 4881113094 ENCODE Processing Pipeline 3fd242e6db4f55a8cb0c1a6685b4489e https://www.encodeproject.org/files/ENCFF046YUV/@@download/ENCFF046YUV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF501CQM bam unfiltered alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF251PNI, ENCFF807MUK, ENCFF860EDN 4878585058 ENCODE Processing Pipeline 5b91f5b2c776fe94425bb89d4444bc7a https://www.encodeproject.org/files/ENCFF501CQM/@@download/ENCFF501CQM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF638LOJ bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF040FWR, ENCFF807MUK, ENCFF898JXS 4086589840 ENCODE Processing Pipeline 31d95da654d2437bf5ff97745a07997b https://www.encodeproject.org/files/ENCFF638LOJ/@@download/ENCFF638LOJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF842YIW bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF251PNI, ENCFF807MUK, ENCFF860EDN 4132502181 ENCODE Processing Pipeline dda660d0c14de0b9c3a5e07bd1678df5 https://www.encodeproject.org/files/ENCFF842YIW/@@download/ENCFF842YIW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF057WON bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF251PNI, ENCFF643CGH, ENCFF860EDN 4133642392 ENCODE Processing Pipeline ec6ff5f1536d0f3caceda39018ab5395 https://www.encodeproject.org/files/ENCFF057WON/@@download/ENCFF057WON.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF526BIB bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF040FWR, ENCFF643CGH, ENCFF898JXS 4088256640 ENCODE Processing Pipeline 5a1c39e0d9263d3ef1bffcbf0bf539c4 https://www.encodeproject.org/files/ENCFF526BIB/@@download/ENCFF526BIB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF527QED bigWig signal p-value ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF842YIW 1210165002 ENCODE Processing Pipeline 458cc748dd65ecc48d24c3edea32ddd3 https://www.encodeproject.org/files/ENCFF527QED/@@download/ENCFF527QED.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF748RKR bigWig signal p-value ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF638LOJ 1293207989 ENCODE Processing Pipeline 05607ba1d5890bc86248d7671702b2d5 https://www.encodeproject.org/files/ENCFF748RKR/@@download/ENCFF748RKR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF277EEG bigWig signal p-value ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF638LOJ, ENCFF842YIW 1387432166 ENCODE Processing Pipeline 3ad09b49e85f929668c05579c5c52346 https://www.encodeproject.org/files/ENCFF277EEG/@@download/ENCFF277EEG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF319XZT bigWig fold change over control ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF842YIW 1220538209 ENCODE Processing Pipeline abcc7717332b6d2e4f270051852d49f3 https://www.encodeproject.org/files/ENCFF319XZT/@@download/ENCFF319XZT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF801BTG bigWig fold change over control ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF638LOJ 1212703553 ENCODE Processing Pipeline c2320e03d4eff3fb22a33f012f3e9482 https://www.encodeproject.org/files/ENCFF801BTG/@@download/ENCFF801BTG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF275OZH bigWig fold change over control ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF638LOJ, ENCFF842YIW 1719694615 ENCODE Processing Pipeline 5f73466a849447a498494d5ade8210a4 https://www.encodeproject.org/files/ENCFF275OZH/@@download/ENCFF275OZH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF115IZR bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF638LOJ 7183282 ENCODE Processing Pipeline 2570a668c82e35b00ac29a80d2cacaba https://www.encodeproject.org/files/ENCFF115IZR/@@download/ENCFF115IZR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF890YMI bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF842YIW 7177854 ENCODE Processing Pipeline 5a61cb8e191b9b058a22a78e6ac7bacf https://www.encodeproject.org/files/ENCFF890YMI/@@download/ENCFF890YMI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF481OIY bigBed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF890YMI 12928174 ENCODE Processing Pipeline 39ab9aa434feba974cb66959134d66e3 https://www.encodeproject.org/files/ENCFF481OIY/@@download/ENCFF481OIY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF330HUW bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF638LOJ, ENCFF842YIW 7282437 ENCODE Processing Pipeline 482205a8f2cbf16df13a08165ff8b0b0 https://www.encodeproject.org/files/ENCFF330HUW/@@download/ENCFF330HUW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF993XBO bigBed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF115IZR 13008815 ENCODE Processing Pipeline 476158241ddbe91955a9ca145bcb85a7 https://www.encodeproject.org/files/ENCFF993XBO/@@download/ENCFF993XBO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF729BCL bigBed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF330HUW 12787501 ENCODE Processing Pipeline 2a5e8d9910ba08393613dbf11b577432 https://www.encodeproject.org/files/ENCFF729BCL/@@download/ENCFF729BCL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF174VIF bed narrowPeak optimal idr thresholded peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF115IZR, ENCFF330HUW, ENCFF890YMI 1289234 ENCODE Processing Pipeline 420b9caf12bb46bb780131f1fd9da63a https://www.encodeproject.org/files/ENCFF174VIF/@@download/ENCFF174VIF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF964FLV bigBed narrowPeak optimal idr thresholded peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF174VIF 2885000 ENCODE Processing Pipeline b7ffffcd5980e2b02a0d4d4a6f813b12 https://www.encodeproject.org/files/ENCFF964FLV/@@download/ENCFF964FLV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF255ERP bigWig signal p-value ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF057WON 1209791697 ENCODE Processing Pipeline df756faf0496b85746eab7ff040e9e46 https://www.encodeproject.org/files/ENCFF255ERP/@@download/ENCFF255ERP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF798IBQ bigWig signal p-value ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF526BIB 1303933734 ENCODE Processing Pipeline 721dad8ea569700d72d579df2e05050c https://www.encodeproject.org/files/ENCFF798IBQ/@@download/ENCFF798IBQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF422IME bigWig signal p-value ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF057WON, ENCFF526BIB 1429181267 ENCODE Processing Pipeline 59417af125c9f29c4b91f08524b825b9 https://www.encodeproject.org/files/ENCFF422IME/@@download/ENCFF422IME.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF836EQO bigWig fold change over control ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF057WON 1220493989 ENCODE Processing Pipeline 8f2c4e11273185cedc92e2ed527b7a7a https://www.encodeproject.org/files/ENCFF836EQO/@@download/ENCFF836EQO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF699FON bigWig fold change over control ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF526BIB 1201263848 ENCODE Processing Pipeline cecb7c5e3d140b3bc83c0ce3f940b552 https://www.encodeproject.org/files/ENCFF699FON/@@download/ENCFF699FON.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF761CJK bigWig fold change over control ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF057WON, ENCFF526BIB 1720519192 ENCODE Processing Pipeline 3e379d1155e09e30150c0fb3d614f015 https://www.encodeproject.org/files/ENCFF761CJK/@@download/ENCFF761CJK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF473AUB bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF526BIB 7052046 ENCODE Processing Pipeline 7f2aee062d4f567406ba178453d7e25a https://www.encodeproject.org/files/ENCFF473AUB/@@download/ENCFF473AUB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF814KER bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF057WON, ENCFF526BIB 7180166 ENCODE Processing Pipeline 4680ce260972dc91813b594252b2206d https://www.encodeproject.org/files/ENCFF814KER/@@download/ENCFF814KER.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF888NXY bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF057WON 7152676 ENCODE Processing Pipeline 22a6e65053db91cab9be73dbc71afb94 https://www.encodeproject.org/files/ENCFF888NXY/@@download/ENCFF888NXY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF653RRH bigBed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF814KER 12674317 ENCODE Processing Pipeline 1ea468361ea0bd51198928db5cc04e88 https://www.encodeproject.org/files/ENCFF653RRH/@@download/ENCFF653RRH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF284BND bigBed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF473AUB 12900266 ENCODE Processing Pipeline fdb722cb30660d84099d26160981fef9 https://www.encodeproject.org/files/ENCFF284BND/@@download/ENCFF284BND.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF457ZOI bigBed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF888NXY 12931105 ENCODE Processing Pipeline b8b623d144bfabe7d7740bc41a77c518 https://www.encodeproject.org/files/ENCFF457ZOI/@@download/ENCFF457ZOI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF887JQV bed narrowPeak optimal idr thresholded peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF473AUB, ENCFF814KER, ENCFF888NXY 1251291 ENCODE Processing Pipeline 3fa00bd8f4c96b03468160c3f24f175e https://www.encodeproject.org/files/ENCFF887JQV/@@download/ENCFF887JQV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF220QXJ bigBed narrowPeak optimal idr thresholded peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF887JQV 2821935 ENCODE Processing Pipeline f86eabe67279fa0ad5023d7689d24880 https://www.encodeproject.org/files/ENCFF220QXJ/@@download/ENCFF220QXJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF592GGD bam unfiltered alignments ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF010QKZ, ENCFF232BIX, ENCFF807MUK 4665624071 ENCODE Processing Pipeline f4c6cfbdb119afada482c113fb494752 https://www.encodeproject.org/files/ENCFF592GGD/@@download/ENCFF592GGD.bam hg19 released antibody characterized with exemption ENCFF010QKZ fastq reads ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF232BIX 2123247157 Michael Snyder, Stanford b6f64c5b180eda5679ea3149b63f7f40 SRA:SRR6212914 https://www.encodeproject.org/files/ENCFF010QKZ/@@download/ENCFF010QKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF241FJP/ released antibody characterized with exemption ENCFF232BIX fastq reads ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF010QKZ 2074697079 Michael Snyder, Stanford 72fdbf0ed7e24ca4bd81cee4990b6bc6 SRA:SRR6212914 https://www.encodeproject.org/files/ENCFF232BIX/@@download/ENCFF232BIX.fastq.gz Illumina HiSeq 2000 /files/ENCFF652BCH/ released antibody characterized with exemption ENCFF224VJS bam alignments ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF010QKZ, ENCFF232BIX, ENCFF807MUK 4019085541 ENCODE Processing Pipeline 4fe15d0a6fcb0fb20cb636e7df94d1ba https://www.encodeproject.org/files/ENCFF224VJS/@@download/ENCFF224VJS.bam hg19 released antibody characterized with exemption ENCFF892VUB bam unfiltered alignments ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF010QKZ, ENCFF232BIX, ENCFF643CGH 4673186461 ENCODE Processing Pipeline 5f106b0c92a9fda335ea466de870a5e1 https://www.encodeproject.org/files/ENCFF892VUB/@@download/ENCFF892VUB.bam GRCh38 released antibody characterized with exemption ENCFF592PPU bam alignments ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF010QKZ, ENCFF232BIX, ENCFF643CGH 4027684270 ENCODE Processing Pipeline c26f82a85f97ca528f52612f87c0d848 https://www.encodeproject.org/files/ENCFF592PPU/@@download/ENCFF592PPU.bam GRCh38 released antibody characterized with exemption ENCFF393KDI bigWig signal p-value ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF224VJS, ENCFF452PDJ 1039191439 ENCODE Processing Pipeline 9feed57369929f6da7db47d04c8f39ed https://www.encodeproject.org/files/ENCFF393KDI/@@download/ENCFF393KDI.bigWig hg19 released antibody characterized with exemption ENCFF358WEO bed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF224VJS, ENCFF452PDJ 5904460 ENCODE Processing Pipeline 8fedf1fed21537f0ab034742414c07aa https://www.encodeproject.org/files/ENCFF358WEO/@@download/ENCFF358WEO.bed.gz hg19 released antibody characterized with exemption ENCFF459AHK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF358WEO 360600 ENCODE Processing Pipeline b051220424422f92963d3a5e003ec8b6 https://www.encodeproject.org/files/ENCFF459AHK/@@download/ENCFF459AHK.bed.gz hg19 released antibody characterized with exemption ENCFF575AUA bigWig fold change over control ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF224VJS, ENCFF452PDJ 1101606015 ENCODE Processing Pipeline d81ed70e615a816e560774415b7cef08 https://www.encodeproject.org/files/ENCFF575AUA/@@download/ENCFF575AUA.bigWig hg19 released antibody characterized with exemption ENCFF799CZC bigBed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF358WEO 11520412 ENCODE Processing Pipeline 545cf4377c07a18aa563dbe939b06201 https://www.encodeproject.org/files/ENCFF799CZC/@@download/ENCFF799CZC.bigBed hg19 released antibody characterized with exemption ENCFF985STH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF459AHK 676669 ENCODE Processing Pipeline 03267ac2f746faefb640f8cb611da482 https://www.encodeproject.org/files/ENCFF985STH/@@download/ENCFF985STH.bigBed hg19 released antibody characterized with exemption ENCFF340BQM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF596RDA 344486 ENCODE Processing Pipeline b31bacc4eb2d2682e5055ea54e1c03f1 https://www.encodeproject.org/files/ENCFF340BQM/@@download/ENCFF340BQM.bed.gz GRCh38 released antibody characterized with exemption ENCFF892JKX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF340BQM 657111 ENCODE Processing Pipeline a08f7c0cbd57dab6da1ed4a30b7e9293 https://www.encodeproject.org/files/ENCFF892JKX/@@download/ENCFF892JKX.bigBed GRCh38 released antibody characterized with exemption ENCFF596RDA bed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF514CZN, ENCFF592PPU 5863535 ENCODE Processing Pipeline 565300883f54120a65d32590e9d2d310 https://www.encodeproject.org/files/ENCFF596RDA/@@download/ENCFF596RDA.bed.gz GRCh38 released antibody characterized with exemption ENCFF313XYN bigWig signal p-value ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF514CZN, ENCFF592PPU 1160044206 ENCODE Processing Pipeline fe9fd82a86fe95030f2b095c02920f35 https://www.encodeproject.org/files/ENCFF313XYN/@@download/ENCFF313XYN.bigWig GRCh38 released antibody characterized with exemption ENCFF600BSH bigWig fold change over control ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF514CZN, ENCFF592PPU 1107863757 ENCODE Processing Pipeline fe8488e91657a5b1f3793722d486aff6 https://www.encodeproject.org/files/ENCFF600BSH/@@download/ENCFF600BSH.bigWig GRCh38 released antibody characterized with exemption ENCFF597VAN bigBed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF596RDA 11488474 ENCODE Processing Pipeline 736d1b38e92907821e3c123c086b193f https://www.encodeproject.org/files/ENCFF597VAN/@@download/ENCFF597VAN.bigBed GRCh38 released antibody characterized with exemption ENCFF000XDW bigBed narrowPeak peaks ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VII 523066 Peggy Farnham, USC 8ad319f2016e372923731c2c968dddc2 https://www.encodeproject.org/files/ENCFF000XDW/@@download/ENCFF000XDW.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDY bam alignments ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XEI 294290615 Peggy Farnham, USC 780ae2365f8065b62e6c080ff595aaf0 https://www.encodeproject.org/files/ENCFF000XDY/@@download/ENCFF000XDY.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDZ bigWig signal ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 385462992 Peggy Farnham, USC d7bb7fde34a601a71d0370a6964c2a0b https://www.encodeproject.org/files/ENCFF000XDZ/@@download/ENCFF000XDZ.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XEA bam alignments ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XEM 359081507 Peggy Farnham, USC d8198cea5e8bf31917b9fce31fdf012d https://www.encodeproject.org/files/ENCFF000XEA/@@download/ENCFF000XEA.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEI fastq reads ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 603422329 Peggy Farnham, USC e198ba5aae0be812f4a18c5adec7285d https://www.encodeproject.org/files/ENCFF000XEI/@@download/ENCFF000XEI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGR/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEM fastq reads ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 763083150 Peggy Farnham, USC d9bb0864e2545c3002738802bb7769e2 https://www.encodeproject.org/files/ENCFF000XEM/@@download/ENCFF000XEM.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGR/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VII bed narrowPeak peaks ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 194254 Peggy Farnham, USC c33839ad84408a5a81461588ff40de4a https://www.encodeproject.org/files/ENCFF001VII/@@download/ENCFF001VII.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CSK bed narrowPeak optimal idr thresholded peaks ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 135202 ENCODE Consortium Analysis Working Group 5b840f06ad48a31dffba2764ce3f40ec https://www.encodeproject.org/files/ENCFF002CSK/@@download/ENCFF002CSK.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF766STR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSK 342959 ENCODE Consortium 7600a4e9d75a704fbd13b6d5502ab867 https://www.encodeproject.org/files/ENCFF766STR/@@download/ENCFF766STR.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF641THN fastq reads ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF616ZBL 2876733326 Michael Snyder, Stanford 232c13b24b50632085251a06540c01b2 SRA:SRR5111846 https://www.encodeproject.org/files/ENCFF641THN/@@download/ENCFF641THN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF100DYO fastq reads ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF862UVE 2324647899 Michael Snyder, Stanford 433f216df66608d0863620c0e8e4e444 SRA:SRR5111847 https://www.encodeproject.org/files/ENCFF100DYO/@@download/ENCFF100DYO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF862UVE fastq reads ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF100DYO 2326038357 Michael Snyder, Stanford 18ee479104ae2ab5a08c8c13c959abaa SRA:SRR5111847 https://www.encodeproject.org/files/ENCFF862UVE/@@download/ENCFF862UVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF616ZBL fastq reads ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF641THN 2881531111 Michael Snyder, Stanford 366e26353a9d2498fb0c3dba6ae7331d SRA:SRR5111846 https://www.encodeproject.org/files/ENCFF616ZBL/@@download/ENCFF616ZBL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF354CDT bam unfiltered alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF100DYO, ENCFF807MUK, ENCFF862UVE 5136632487 ENCODE Processing Pipeline eae10af816df2ca26b52619adac5b323 https://www.encodeproject.org/files/ENCFF354CDT/@@download/ENCFF354CDT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF141AVI bam unfiltered alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF616ZBL, ENCFF641THN, ENCFF807MUK 6256083204 ENCODE Processing Pipeline b0c88ac01390e30b85daa703ed7df9a5 https://www.encodeproject.org/files/ENCFF141AVI/@@download/ENCFF141AVI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF121INF bam unfiltered alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF100DYO, ENCFF643CGH, ENCFF862UVE 5141902633 ENCODE Processing Pipeline ad4e8c8ffa022034aa92a3132b6f7151 https://www.encodeproject.org/files/ENCFF121INF/@@download/ENCFF121INF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF294FJN bam unfiltered alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF616ZBL, ENCFF641THN, ENCFF643CGH 6261866694 ENCODE Processing Pipeline 988d87881d1cd682d4a564a68322e17d https://www.encodeproject.org/files/ENCFF294FJN/@@download/ENCFF294FJN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF723EYG bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF100DYO, ENCFF807MUK, ENCFF862UVE 4478891599 ENCODE Processing Pipeline 6f339204bb3d597064584f2a657d94d6 https://www.encodeproject.org/files/ENCFF723EYG/@@download/ENCFF723EYG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF128DGJ bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF100DYO, ENCFF643CGH, ENCFF862UVE 4481420240 ENCODE Processing Pipeline 77955410c5cb6ea760b3b8a4978bb1f7 https://www.encodeproject.org/files/ENCFF128DGJ/@@download/ENCFF128DGJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF617GJF bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF616ZBL, ENCFF641THN, ENCFF807MUK 5404370971 ENCODE Processing Pipeline eb919d64998fc99a28f61ca96263c9c9 https://www.encodeproject.org/files/ENCFF617GJF/@@download/ENCFF617GJF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF120RXG bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF616ZBL, ENCFF641THN, ENCFF643CGH 5408272366 ENCODE Processing Pipeline e6653ea46000cca3e96d5eb8e976d6e8 https://www.encodeproject.org/files/ENCFF120RXG/@@download/ENCFF120RXG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF581TNG bigWig signal p-value ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF617GJF 1471153503 ENCODE Processing Pipeline f9b28da756afbbcca956ccc885b3cf7b https://www.encodeproject.org/files/ENCFF581TNG/@@download/ENCFF581TNG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF637NGM bigWig signal p-value ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF723EYG 1508125299 ENCODE Processing Pipeline 7ea7fd38a6ef0129b4fd685cc9e237ef https://www.encodeproject.org/files/ENCFF637NGM/@@download/ENCFF637NGM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF308TVH bigWig signal p-value ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF617GJF, ENCFF723EYG 1948578916 ENCODE Processing Pipeline d75e22505f6c83920b7e5ce493835ae1 https://www.encodeproject.org/files/ENCFF308TVH/@@download/ENCFF308TVH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF979CIK bigWig fold change over control ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF617GJF 1514982149 ENCODE Processing Pipeline 772406d7bd6280d49d17f524e24d2128 https://www.encodeproject.org/files/ENCFF979CIK/@@download/ENCFF979CIK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF099OEU bigWig fold change over control ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF723EYG 1398791452 ENCODE Processing Pipeline 7393896965723c07c614104fc0233610 https://www.encodeproject.org/files/ENCFF099OEU/@@download/ENCFF099OEU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF535BIX bigWig fold change over control ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF617GJF, ENCFF723EYG 2001610219 ENCODE Processing Pipeline 82e6c0284d83a419a9519917a6d00baa https://www.encodeproject.org/files/ENCFF535BIX/@@download/ENCFF535BIX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF943SEQ bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF617GJF 7143444 ENCODE Processing Pipeline 74daaecbd6352e4547c3e351034faa73 https://www.encodeproject.org/files/ENCFF943SEQ/@@download/ENCFF943SEQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF931VDE bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF723EYG 6954253 ENCODE Processing Pipeline 725d02df0dc4f668c0d26222f06834fd https://www.encodeproject.org/files/ENCFF931VDE/@@download/ENCFF931VDE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF778AIS bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF617GJF, ENCFF723EYG 7258077 ENCODE Processing Pipeline 24debc0b8b0b3b7055cc3aa759170cea https://www.encodeproject.org/files/ENCFF778AIS/@@download/ENCFF778AIS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF865KMP bigBed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF943SEQ 13140460 ENCODE Processing Pipeline 45bd269f8b40dbeb3e837327c37b8ee7 https://www.encodeproject.org/files/ENCFF865KMP/@@download/ENCFF865KMP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF504CCN bigBed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF931VDE 13310681 ENCODE Processing Pipeline 94c46d95f5121ed3b227e7c18ab45fec https://www.encodeproject.org/files/ENCFF504CCN/@@download/ENCFF504CCN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF246OGE bigBed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF778AIS 13072415 ENCODE Processing Pipeline e711e5c7992c976ac1b83ae5cef38756 https://www.encodeproject.org/files/ENCFF246OGE/@@download/ENCFF246OGE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF850KJN bed narrowPeak conservative idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF778AIS, ENCFF931VDE, ENCFF943SEQ 693518 ENCODE Processing Pipeline ed77cea2264ef838a16d7b760c2c79cd https://www.encodeproject.org/files/ENCFF850KJN/@@download/ENCFF850KJN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF765QZL bigBed narrowPeak conservative idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF850KJN 1508241 ENCODE Processing Pipeline 2b2a9e9c928fcdccbdaa26d3a9fbc068 https://www.encodeproject.org/files/ENCFF765QZL/@@download/ENCFF765QZL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF649JWU bed narrowPeak optimal idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF778AIS, ENCFF931VDE, ENCFF943SEQ 734619 ENCODE Processing Pipeline 0e238560200e61dd9bd47322119610d9 https://www.encodeproject.org/files/ENCFF649JWU/@@download/ENCFF649JWU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF726GYI bigBed narrowPeak optimal idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF649JWU 1586275 ENCODE Processing Pipeline 63024da811aacd75a42a1d3bc339c709 https://www.encodeproject.org/files/ENCFF726GYI/@@download/ENCFF726GYI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF289CNV bigWig signal p-value ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF120RXG, ENCFF128DGJ 1949772110 ENCODE Processing Pipeline a7c7b0834cc55549337ac757200f39d3 https://www.encodeproject.org/files/ENCFF289CNV/@@download/ENCFF289CNV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF089UKE bigWig fold change over control ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120RXG 1507722418 ENCODE Processing Pipeline 440c8b318786a64dc3eaf1f6c2a1ce7d https://www.encodeproject.org/files/ENCFF089UKE/@@download/ENCFF089UKE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF709CMW bigWig signal p-value ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120RXG 1296372798 ENCODE Processing Pipeline 2420b66f47a3bff1466854ab8fac8296 https://www.encodeproject.org/files/ENCFF709CMW/@@download/ENCFF709CMW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF607WHZ bigWig signal p-value ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF128DGJ 1329262406 ENCODE Processing Pipeline fd63d12078792280943754bb888d4b01 https://www.encodeproject.org/files/ENCFF607WHZ/@@download/ENCFF607WHZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF229CUJ bigWig fold change over control ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF128DGJ 1404609216 ENCODE Processing Pipeline 9d1affbead3f0b0425156938914e302b https://www.encodeproject.org/files/ENCFF229CUJ/@@download/ENCFF229CUJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF539JSB bigWig fold change over control ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF120RXG, ENCFF128DGJ 2004702633 ENCODE Processing Pipeline 927393a63223e4a5491fc44cc56ca63c https://www.encodeproject.org/files/ENCFF539JSB/@@download/ENCFF539JSB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF366EWW bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120RXG 7109830 ENCODE Processing Pipeline cb28df3939c80b57630a6cba39ac0aa7 https://www.encodeproject.org/files/ENCFF366EWW/@@download/ENCFF366EWW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF376GCF bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF128DGJ 6883775 ENCODE Processing Pipeline ba4eaf0b10316a10016e71d93bf35b9a https://www.encodeproject.org/files/ENCFF376GCF/@@download/ENCFF376GCF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF188JJH bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF120RXG, ENCFF128DGJ 7289996 ENCODE Processing Pipeline 4b60605c63772b0c3a8457de531e0842 https://www.encodeproject.org/files/ENCFF188JJH/@@download/ENCFF188JJH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF994FVK bigBed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF366EWW 13153936 ENCODE Processing Pipeline 7e7f1a77c173d5749806f733ef74b76c https://www.encodeproject.org/files/ENCFF994FVK/@@download/ENCFF994FVK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF546TIS bigBed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF376GCF 13326255 ENCODE Processing Pipeline b5ddbd4bc21a470671887a4749f0fe3d https://www.encodeproject.org/files/ENCFF546TIS/@@download/ENCFF546TIS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF369VYR bed narrowPeak conservative idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF188JJH, ENCFF366EWW, ENCFF376GCF, ENCFF419RSJ 701700 ENCODE Processing Pipeline ff54230298418ea15042678fa1ba0212 https://www.encodeproject.org/files/ENCFF369VYR/@@download/ENCFF369VYR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF018OCH bigBed narrowPeak optimal idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF855XBY 1597071 ENCODE Processing Pipeline fb78201824ec854495586304dbe25a3f https://www.encodeproject.org/files/ENCFF018OCH/@@download/ENCFF018OCH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF820NHP bigBed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF188JJH 13128484 ENCODE Processing Pipeline 1d9566ef342ed7953dc645d02bbc5971 https://www.encodeproject.org/files/ENCFF820NHP/@@download/ENCFF820NHP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF199NUS bigBed narrowPeak conservative idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF369VYR 1522059 ENCODE Processing Pipeline 387ec8a47df6f73d43df16ac7ab3ad58 https://www.encodeproject.org/files/ENCFF199NUS/@@download/ENCFF199NUS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF855XBY bed narrowPeak optimal idr thresholded peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF188JJH, ENCFF366EWW, ENCFF376GCF, ENCFF419RSJ 741047 ENCODE Processing Pipeline 26af60cedecb898b23357b4f4f1b3fc2 https://www.encodeproject.org/files/ENCFF855XBY/@@download/ENCFF855XBY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF788CVF fastq reads ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 2 ENCFF094OAY 4493813978 Michael Snyder, Stanford a9903ab6ec57833e0d1ea92db7e4fab2 SRA:SRR5111496 https://www.encodeproject.org/files/ENCFF788CVF/@@download/ENCFF788CVF.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF969VJB fastq reads ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 1 ENCFF971IAU 3373279837 Michael Snyder, Stanford 752336aadc10b98821aaf745c0f4b7cf SRA:SRR5111497 https://www.encodeproject.org/files/ENCFF969VJB/@@download/ENCFF969VJB.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF971IAU fastq reads ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 1 100 paired-ended 2 ENCFF969VJB 3764379455 Michael Snyder, Stanford 7b79808779cc0d430591293cfa3968cd SRA:SRR5111497 https://www.encodeproject.org/files/ENCFF971IAU/@@download/ENCFF971IAU.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF094OAY fastq reads ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 1 100 paired-ended 1 ENCFF788CVF 4057076285 Michael Snyder, Stanford aadeac0660631aa20799276b2e30927e SRA:SRR5111496 https://www.encodeproject.org/files/ENCFF094OAY/@@download/ENCFF094OAY.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released file validation error, mild to moderate bottlenecking mismatched file status ENCFF039HTJ bam unfiltered alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF643CGH, ENCFF969VJB, ENCFF971IAU 7038618556 ENCODE Processing Pipeline 68cf12dfea3adc7dc6cf68bb27dcbae8 https://www.encodeproject.org/files/ENCFF039HTJ/@@download/ENCFF039HTJ.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF452ZMO bam unfiltered alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF807MUK, ENCFF969VJB, ENCFF971IAU 7023795571 ENCODE Processing Pipeline 4379cc8ccbba8f7da4851b3048f58637 https://www.encodeproject.org/files/ENCFF452ZMO/@@download/ENCFF452ZMO.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF720OQP bam unfiltered alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF094OAY, ENCFF788CVF, ENCFF807MUK 8267278254 ENCODE Processing Pipeline 0afc469d478b8b119eaaf8a9ac438f22 https://www.encodeproject.org/files/ENCFF720OQP/@@download/ENCFF720OQP.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF814PBC bam unfiltered alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF094OAY, ENCFF643CGH, ENCFF788CVF 8284429567 ENCODE Processing Pipeline f4d52b30ac3647c3acb8e157ebcfcd42 https://www.encodeproject.org/files/ENCFF814PBC/@@download/ENCFF814PBC.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF712AJA bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF807MUK, ENCFF969VJB, ENCFF971IAU 5387464619 ENCODE Processing Pipeline 72e637046005aa98341316e9e94ac0e9 https://www.encodeproject.org/files/ENCFF712AJA/@@download/ENCFF712AJA.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF288EDV bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF643CGH, ENCFF969VJB, ENCFF971IAU 5394327450 ENCODE Processing Pipeline 49c6cf5a133309b43d77bb46f10fcb1b https://www.encodeproject.org/files/ENCFF288EDV/@@download/ENCFF288EDV.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF673NIW bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF094OAY, ENCFF643CGH, ENCFF788CVF 6341254618 ENCODE Processing Pipeline d27d4b182b94cf7f5609bfd837944074 https://www.encodeproject.org/files/ENCFF673NIW/@@download/ENCFF673NIW.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF020EIS bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF094OAY, ENCFF788CVF, ENCFF807MUK 6331599718 ENCODE Processing Pipeline 17719ea94da902f6b31a6425b9b70d30 https://www.encodeproject.org/files/ENCFF020EIS/@@download/ENCFF020EIS.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF155YVV bigWig signal p-value ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF020EIS, ENCFF447KVS, ENCFF823USR 1686084770 ENCODE Processing Pipeline b18c9c48b30ff6e5ffdd10ad23a20329 https://www.encodeproject.org/files/ENCFF155YVV/@@download/ENCFF155YVV.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF490SKV bigWig signal p-value ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF712AJA, ENCFF823USR 1639894631 ENCODE Processing Pipeline b0ac8c51ca83b086b494dec81dc0cc45 https://www.encodeproject.org/files/ENCFF490SKV/@@download/ENCFF490SKV.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF823ONB bigWig signal p-value ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF020EIS, ENCFF447KVS, ENCFF712AJA, ENCFF823USR 2229255485 ENCODE Processing Pipeline b191d7c7fb28acabcf61d5e76149efd3 https://www.encodeproject.org/files/ENCFF823ONB/@@download/ENCFF823ONB.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF771EMC bigWig fold change over control ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF712AJA, ENCFF823USR 1834462381 ENCODE Processing Pipeline 6dbf4eabcde7f697f6b9a38f7c5e9c37 https://www.encodeproject.org/files/ENCFF771EMC/@@download/ENCFF771EMC.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF905SAE bigWig fold change over control ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF020EIS, ENCFF447KVS, ENCFF823USR 1973547942 ENCODE Processing Pipeline fe33cc2df1530b8f5d63a0507a72afd6 https://www.encodeproject.org/files/ENCFF905SAE/@@download/ENCFF905SAE.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF510IAP bigWig fold change over control ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF020EIS, ENCFF447KVS, ENCFF712AJA, ENCFF823USR 2523785271 ENCODE Processing Pipeline cb0f1747b9de449b183062540cf031df https://www.encodeproject.org/files/ENCFF510IAP/@@download/ENCFF510IAP.bigWig hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF511ZHC bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF712AJA, ENCFF823USR 7155271 ENCODE Processing Pipeline 8c5428df4a3d639d84458f15c9d9274d https://www.encodeproject.org/files/ENCFF511ZHC/@@download/ENCFF511ZHC.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF086HCP bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF020EIS, ENCFF447KVS, ENCFF823USR 7158938 ENCODE Processing Pipeline 9aa3bdff9c05546a2d675a79f4bba726 https://www.encodeproject.org/files/ENCFF086HCP/@@download/ENCFF086HCP.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF685HYH bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF020EIS, ENCFF447KVS, ENCFF712AJA, ENCFF823USR 7243314 ENCODE Processing Pipeline d780fb973c801e68c31d3682ded5786b https://www.encodeproject.org/files/ENCFF685HYH/@@download/ENCFF685HYH.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF906FKE bigBed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF511ZHC 13418974 ENCODE Processing Pipeline 976069f2d05171ae1590697a95c6bc42 https://www.encodeproject.org/files/ENCFF906FKE/@@download/ENCFF906FKE.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF095MAD bigBed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF086HCP 13386307 ENCODE Processing Pipeline ab0bc86d089944630ad1b80b6ac81f1c https://www.encodeproject.org/files/ENCFF095MAD/@@download/ENCFF095MAD.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF409RZK bigBed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF685HYH 13352581 ENCODE Processing Pipeline 5fc61b081b8566d3ebaf752fe8376b04 https://www.encodeproject.org/files/ENCFF409RZK/@@download/ENCFF409RZK.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF653SBT bigBed narrowPeak conservative idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF208ODJ 527972 ENCODE Processing Pipeline c35d95f7310553f0cf4d43c9da8d9953 https://www.encodeproject.org/files/ENCFF653SBT/@@download/ENCFF653SBT.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status ENCFF407XFH bed narrowPeak conservative idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF086HCP, ENCFF511ZHC, ENCFF685HYH 250227 ENCODE Processing Pipeline 1de5ab5a62b0557a7fe975db576ff9f3 https://www.encodeproject.org/files/ENCFF407XFH/@@download/ENCFF407XFH.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF413VXH bigBed narrowPeak optimal idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF843PKZ 564453 ENCODE Processing Pipeline 26195ed30aa57193376a3a1a3741eb48 https://www.encodeproject.org/files/ENCFF413VXH/@@download/ENCFF413VXH.bigBed hg19 released file validation error, mild to moderate bottlenecking mismatched status, mismatched file status ENCFF397XTF bed narrowPeak optimal idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF001TDO, ENCFF086HCP, ENCFF511ZHC, ENCFF685HYH 275891 ENCODE Processing Pipeline a71767d139b97728bef6593298a3d875 https://www.encodeproject.org/files/ENCFF397XTF/@@download/ENCFF397XTF.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF536QZN bigWig signal p-value ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF288EDV, ENCFF746SKT 1396665450 ENCODE Processing Pipeline 8f34ce7d065752e3bce0c24ddb924768 https://www.encodeproject.org/files/ENCFF536QZN/@@download/ENCFF536QZN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF474VEW bigWig signal p-value ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF673NIW, ENCFF746SKT 1508215736 ENCODE Processing Pipeline cd03dece14e169db8c3964b0462344f3 https://www.encodeproject.org/files/ENCFF474VEW/@@download/ENCFF474VEW.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF420VHP bigWig signal p-value ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF288EDV, ENCFF673NIW, ENCFF746SKT 2231326874 ENCODE Processing Pipeline f7fbddacd1a21644548183959dce3356 https://www.encodeproject.org/files/ENCFF420VHP/@@download/ENCFF420VHP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF064KSV bigWig fold change over control ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF288EDV, ENCFF746SKT 1811159939 ENCODE Processing Pipeline 43224d199914f3a9511014a974b39e1c https://www.encodeproject.org/files/ENCFF064KSV/@@download/ENCFF064KSV.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF206BCQ bigWig fold change over control ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF673NIW, ENCFF746SKT 1976920940 ENCODE Processing Pipeline 133e0fdb3cc84d6ccc39936bf9c02f54 https://www.encodeproject.org/files/ENCFF206BCQ/@@download/ENCFF206BCQ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF129CTZ bigWig fold change over control ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF288EDV, ENCFF673NIW, ENCFF746SKT 2524271690 ENCODE Processing Pipeline 7c6209080d93609a0a9a4035a78d72f5 https://www.encodeproject.org/files/ENCFF129CTZ/@@download/ENCFF129CTZ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF043MJJ bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF191XYH, ENCFF673NIW, ENCFF746SKT 7101184 ENCODE Processing Pipeline 5c23617a4b28664e5b8c629e37e073c3 https://www.encodeproject.org/files/ENCFF043MJJ/@@download/ENCFF043MJJ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF390VCD bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF191XYH, ENCFF288EDV, ENCFF673NIW, ENCFF746SKT 7263278 ENCODE Processing Pipeline 5d9bda303fdcac55a72bd84af7d96216 https://www.encodeproject.org/files/ENCFF390VCD/@@download/ENCFF390VCD.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF104MGM bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF191XYH, ENCFF288EDV, ENCFF746SKT 7082734 ENCODE Processing Pipeline 280008fca6cbf6bc769ece8ef67ded0c https://www.encodeproject.org/files/ENCFF104MGM/@@download/ENCFF104MGM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF763KQT bigBed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF390VCD 13391023 ENCODE Processing Pipeline ce570434294f98017a208da2ccfabf7e https://www.encodeproject.org/files/ENCFF763KQT/@@download/ENCFF763KQT.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF338ZML bigBed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF104MGM 13405941 ENCODE Processing Pipeline c55f2614322072be205fd8247b81b254 https://www.encodeproject.org/files/ENCFF338ZML/@@download/ENCFF338ZML.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF840KCZ bigBed narrowPeak conservative idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF849TPX 539077 ENCODE Processing Pipeline 9db2842da1b9edf2bc6a44fc3528920e https://www.encodeproject.org/files/ENCFF840KCZ/@@download/ENCFF840KCZ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF840MUY bigBed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF043MJJ 11201266 ENCODE Processing Pipeline cfe1efa6ddf8d2a19d42f5faa71eb1f1 https://www.encodeproject.org/files/ENCFF840MUY/@@download/ENCFF840MUY.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF932XEU bed narrowPeak optimal idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF043MJJ, ENCFF104MGM, ENCFF390VCD, ENCFF419RSJ 289183 ENCODE Processing Pipeline 91cde484a80639eea08c934f6ead653a https://www.encodeproject.org/files/ENCFF932XEU/@@download/ENCFF932XEU.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF849TPX bed narrowPeak conservative idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF043MJJ, ENCFF104MGM, ENCFF390VCD, ENCFF419RSJ 257417 ENCODE Processing Pipeline 79adfba276ad4e25900b2334e14eb94a https://www.encodeproject.org/files/ENCFF849TPX/@@download/ENCFF849TPX.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF886LUK bigBed narrowPeak optimal idr thresholded peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1, 2 ENCFF932XEU 584523 ENCODE Processing Pipeline 9a3b61f802d42624f100724bd5863b12 https://www.encodeproject.org/files/ENCFF886LUK/@@download/ENCFF886LUK.bigBed GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF273PKH bam unfiltered alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 100 ENCFF439KQS, ENCFF784WEP, ENCFF807MUK 4843981004 ENCODE Processing Pipeline 2f5248e023eeafe26c611a6e3f6cf04e https://www.encodeproject.org/files/ENCFF273PKH/@@download/ENCFF273PKH.bam hg19 released experiment not submitted to GEO ENCFF784WEP fastq reads ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 1 ENCFF439KQS 2203656419 Michael Snyder, Stanford 615c242f3762dd0e183965c0e3bf44d7 https://www.encodeproject.org/files/ENCFF784WEP/@@download/ENCFF784WEP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released experiment not submitted to GEO ENCFF439KQS fastq reads ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 2 ENCFF784WEP 2237023827 Michael Snyder, Stanford ceb379803d332716433b8ea75c2a9b3b https://www.encodeproject.org/files/ENCFF439KQS/@@download/ENCFF439KQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released experiment not submitted to GEO ENCFF064TLT bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF439KQS, ENCFF784WEP, ENCFF807MUK 3943890673 ENCODE Processing Pipeline 474693cd55ceaf193b8aec379ecbdea7 https://www.encodeproject.org/files/ENCFF064TLT/@@download/ENCFF064TLT.bam hg19 released experiment not submitted to GEO ENCFF914HTT fastq reads ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF531XCH 2260473002 Michael Snyder, Stanford fb826f484c547b638f92523168c436ac https://www.encodeproject.org/files/ENCFF914HTT/@@download/ENCFF914HTT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released experiment not submitted to GEO ENCFF531XCH fastq reads ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF914HTT 2302134873 Michael Snyder, Stanford a5de280809c59b1e3014b71d384bdcd0 https://www.encodeproject.org/files/ENCFF531XCH/@@download/ENCFF531XCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released experiment not submitted to GEO ENCFF506BXT bam unfiltered alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 101 ENCFF531XCH, ENCFF807MUK, ENCFF914HTT 4505689962 ENCODE Processing Pipeline 8964f7b8691e5f1a53624dfdef90ace8 https://www.encodeproject.org/files/ENCFF506BXT/@@download/ENCFF506BXT.bam hg19 released experiment not submitted to GEO ENCFF367DJA bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 101 ENCFF531XCH, ENCFF807MUK, ENCFF914HTT 3884694510 ENCODE Processing Pipeline 2cddba8621c625889ede22954c35c2d6 https://www.encodeproject.org/files/ENCFF367DJA/@@download/ENCFF367DJA.bam hg19 released experiment not submitted to GEO ENCFF552OWQ bam unfiltered alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 100 ENCFF439KQS, ENCFF643CGH, ENCFF784WEP 4847841765 ENCODE Processing Pipeline af0c9a17245c8b2a3e4f06054a65ba56 https://www.encodeproject.org/files/ENCFF552OWQ/@@download/ENCFF552OWQ.bam GRCh38 released experiment not submitted to GEO ENCFF882BOA bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 100 ENCFF439KQS, ENCFF643CGH, ENCFF784WEP 3947151664 ENCODE Processing Pipeline cd3e398d03d432bdb17add40c0c83db0 https://www.encodeproject.org/files/ENCFF882BOA/@@download/ENCFF882BOA.bam GRCh38 released experiment not submitted to GEO ENCFF597KOW bam unfiltered alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 101 ENCFF531XCH, ENCFF643CGH, ENCFF914HTT 4510186371 ENCODE Processing Pipeline d8759d9dcb00de28009921b7670343ab https://www.encodeproject.org/files/ENCFF597KOW/@@download/ENCFF597KOW.bam GRCh38 released experiment not submitted to GEO ENCFF393YFX bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 101 ENCFF531XCH, ENCFF643CGH, ENCFF914HTT 3886043108 ENCODE Processing Pipeline 51eecf90503b88dc3630b46a748aaff4 https://www.encodeproject.org/files/ENCFF393YFX/@@download/ENCFF393YFX.bam GRCh38 released experiment not submitted to GEO ENCFF501VUR bigWig fold change over control ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF064TLT, ENCFF581ZJL 1107807261 ENCODE Processing Pipeline 7c577a3299cd4a5b663d15db32b4c0b9 https://www.encodeproject.org/files/ENCFF501VUR/@@download/ENCFF501VUR.bigWig hg19 released experiment not submitted to GEO ENCFF893NOB bigWig signal p-value ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF064TLT, ENCFF367DJA, ENCFF581ZJL 1599704183 ENCODE Processing Pipeline 1d579a7068ca58b380838d5b1404894a https://www.encodeproject.org/files/ENCFF893NOB/@@download/ENCFF893NOB.bigWig hg19 released experiment not submitted to GEO ENCFF677ZYP bigBed narrowPeak optimal idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF164HLQ 743941 ENCODE Processing Pipeline a0ff2a47f818f4e6d33e00cd41404c83 https://www.encodeproject.org/files/ENCFF677ZYP/@@download/ENCFF677ZYP.bigBed hg19 released experiment not submitted to GEO ENCFF718TWK bigWig signal p-value ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF882BOA, ENCFF910IKB 1103025665 ENCODE Processing Pipeline d3e8366e29a56c667edf9cd0b3813709 https://www.encodeproject.org/files/ENCFF718TWK/@@download/ENCFF718TWK.bigWig GRCh38 released experiment not submitted to GEO ENCFF267XHE bigWig fold change over control ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF882BOA, ENCFF910IKB 1112695888 ENCODE Processing Pipeline d59538ea23cdaf51ddd7575cd21790b9 https://www.encodeproject.org/files/ENCFF267XHE/@@download/ENCFF267XHE.bigWig GRCh38 released experiment not submitted to GEO ENCFF886DEE bigWig signal p-value ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF367DJA 950633790 ENCODE Processing Pipeline 45910a4c07e69516425ef9d11d3cd4ee https://www.encodeproject.org/files/ENCFF886DEE/@@download/ENCFF886DEE.bigWig hg19 released experiment not submitted to GEO ENCFF747PPN bigBed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF481CBF 13094135 ENCODE Processing Pipeline e30a86f78b261f3ec37c71ec27247adb https://www.encodeproject.org/files/ENCFF747PPN/@@download/ENCFF747PPN.bigBed hg19 released experiment not submitted to GEO ENCFF911LSH bigBed narrowPeak conservative idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF906BNB 411029 ENCODE Processing Pipeline b2aa0ea41918e0473847e1139bc9d3c6 https://www.encodeproject.org/files/ENCFF911LSH/@@download/ENCFF911LSH.bigBed hg19 released experiment not submitted to GEO ENCFF164HLQ bed narrowPeak optimal idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF021ITV, ENCFF481CBF, ENCFF774YSI 350042 ENCODE Processing Pipeline 1b273fe39996dc7dc244c82058a4a083 https://www.encodeproject.org/files/ENCFF164HLQ/@@download/ENCFF164HLQ.bed.gz hg19 released experiment not submitted to GEO ENCFF079SQC bigWig signal p-value ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF393YFX 1071642107 ENCODE Processing Pipeline 77db94f47119e2ad3b361a1a3e9dede8 https://www.encodeproject.org/files/ENCFF079SQC/@@download/ENCFF079SQC.bigWig GRCh38 released experiment not submitted to GEO ENCFF653YBH bigWig signal p-value ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF064TLT, ENCFF581ZJL 953244028 ENCODE Processing Pipeline 5ce46382d49c3bc95c8ce0ba95be10b6 https://www.encodeproject.org/files/ENCFF653YBH/@@download/ENCFF653YBH.bigWig hg19 released experiment not submitted to GEO ENCFF165QYW bigWig fold change over control ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF064TLT, ENCFF367DJA, ENCFF581ZJL 2020156191 ENCODE Processing Pipeline 3a29efd180a863f3fb864a5a3282eebe https://www.encodeproject.org/files/ENCFF165QYW/@@download/ENCFF165QYW.bigWig hg19 released experiment not submitted to GEO ENCFF285SPK bigBed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF021ITV 13027584 ENCODE Processing Pipeline 1805d43e3adf738e0a02d00330548fa4 https://www.encodeproject.org/files/ENCFF285SPK/@@download/ENCFF285SPK.bigBed hg19 released experiment not submitted to GEO ENCFF730JPJ bigBed narrowPeak conservative idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF580SYA 413978 ENCODE Processing Pipeline 2f59b2ecad9a247860d9188f5b7f23b5 https://www.encodeproject.org/files/ENCFF730JPJ/@@download/ENCFF730JPJ.bigBed GRCh38 released experiment not submitted to GEO ENCFF168KHS bed narrowPeak optimal idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF131RPK, ENCFF247UNQ, ENCFF419RSJ, ENCFF478XNR 357398 ENCODE Processing Pipeline 40bc0db2f9230869b83ab1bf1cc6d264 https://www.encodeproject.org/files/ENCFF168KHS/@@download/ENCFF168KHS.bed.gz GRCh38 released experiment not submitted to GEO ENCFF774YSI bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF367DJA 6509231 ENCODE Processing Pipeline 07f7a12bd73ad380f2b0c5a211bb898c https://www.encodeproject.org/files/ENCFF774YSI/@@download/ENCFF774YSI.bed.gz hg19 released experiment not submitted to GEO ENCFF906BNB bed narrowPeak conservative idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF021ITV, ENCFF481CBF, ENCFF774YSI 204527 ENCODE Processing Pipeline bb68e262d6e5a0d7c1348511735cf188 https://www.encodeproject.org/files/ENCFF906BNB/@@download/ENCFF906BNB.bed.gz hg19 released experiment not submitted to GEO ENCFF904FJE bigWig fold change over control ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF367DJA 1104751721 ENCODE Processing Pipeline 6e952404cb301c6f3aaccf33c4ab6d8c https://www.encodeproject.org/files/ENCFF904FJE/@@download/ENCFF904FJE.bigWig hg19 released experiment not submitted to GEO ENCFF021ITV bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF064TLT, ENCFF367DJA, ENCFF581ZJL 7206008 ENCODE Processing Pipeline b7b50a573dbbd6d4c5b979730f945560 https://www.encodeproject.org/files/ENCFF021ITV/@@download/ENCFF021ITV.bed.gz hg19 released experiment not submitted to GEO ENCFF691GNB bigWig fold change over control ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF393YFX 1105967513 ENCODE Processing Pipeline 125d284ba306e53d3ab400bd4e2ac386 https://www.encodeproject.org/files/ENCFF691GNB/@@download/ENCFF691GNB.bigWig GRCh38 released experiment not submitted to GEO ENCFF481CBF bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF064TLT, ENCFF581ZJL 6923903 ENCODE Processing Pipeline bb2ded9a9d6cfd8870342e0797f3babb https://www.encodeproject.org/files/ENCFF481CBF/@@download/ENCFF481CBF.bed.gz hg19 released experiment not submitted to GEO ENCFF342OPJ bigBed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF774YSI 13304454 ENCODE Processing Pipeline e553f57a855c93f62d62bac6ede5cc16 https://www.encodeproject.org/files/ENCFF342OPJ/@@download/ENCFF342OPJ.bigBed hg19 released experiment not submitted to GEO ENCFF231WEF bigWig signal p-value ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF393YFX, ENCFF882BOA, ENCFF910IKB 1813089715 ENCODE Processing Pipeline 7c388e9c99e5c2bf89f2af33bfa8626c https://www.encodeproject.org/files/ENCFF231WEF/@@download/ENCFF231WEF.bigWig GRCh38 released experiment not submitted to GEO ENCFF507TJE bigWig fold change over control ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF393YFX, ENCFF882BOA, ENCFF910IKB 2021661131 ENCODE Processing Pipeline a9136d6e2b9e9efa440513378a9fe659 https://www.encodeproject.org/files/ENCFF507TJE/@@download/ENCFF507TJE.bigWig GRCh38 released experiment not submitted to GEO ENCFF247UNQ bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF882BOA, ENCFF910IKB 6921841 ENCODE Processing Pipeline f01953cfa1e2c40769e4dc91c3e89976 https://www.encodeproject.org/files/ENCFF247UNQ/@@download/ENCFF247UNQ.bed.gz GRCh38 released experiment not submitted to GEO ENCFF478XNR bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF393YFX 6494853 ENCODE Processing Pipeline 4526062305b8853e6c7d8346d8ad3255 https://www.encodeproject.org/files/ENCFF478XNR/@@download/ENCFF478XNR.bed.gz GRCh38 released experiment not submitted to GEO ENCFF131RPK bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF393YFX, ENCFF882BOA, ENCFF910IKB 7219070 ENCODE Processing Pipeline 80903198d454c98607dd51fe3cc7794a https://www.encodeproject.org/files/ENCFF131RPK/@@download/ENCFF131RPK.bed.gz GRCh38 released experiment not submitted to GEO ENCFF257GUM bigBed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF247UNQ 13108432 ENCODE Processing Pipeline 2e20d2bc013dbee22ad90532d22789e4 https://www.encodeproject.org/files/ENCFF257GUM/@@download/ENCFF257GUM.bigBed GRCh38 released experiment not submitted to GEO ENCFF352PJR bigBed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 ENCFF478XNR 13299622 ENCODE Processing Pipeline e31719f119676ea8a155de82057ff603 https://www.encodeproject.org/files/ENCFF352PJR/@@download/ENCFF352PJR.bigBed GRCh38 released experiment not submitted to GEO ENCFF330MZH bigBed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF131RPK 13049592 ENCODE Processing Pipeline f9a669dba915deb4f03075c80b93b19c https://www.encodeproject.org/files/ENCFF330MZH/@@download/ENCFF330MZH.bigBed GRCh38 released experiment not submitted to GEO ENCFF580SYA bed narrowPeak conservative idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF131RPK, ENCFF247UNQ, ENCFF419RSJ, ENCFF478XNR 206078 ENCODE Processing Pipeline 2e26bdd411b67117cddf1d48d47a47e6 https://www.encodeproject.org/files/ENCFF580SYA/@@download/ENCFF580SYA.bed.gz GRCh38 released experiment not submitted to GEO ENCFF671AKN bigBed narrowPeak optimal idr thresholded peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF168KHS 755733 ENCODE Processing Pipeline 3d96c32bcc1bf20ac04371602b3764d6 https://www.encodeproject.org/files/ENCFF671AKN/@@download/ENCFF671AKN.bigBed GRCh38 released experiment not submitted to GEO ENCFF664WOZ bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF807MUK 1340236607 ENCODE Processing Pipeline 38ef0bb23257ce97baa70f527caad3c3 https://www.encodeproject.org/files/ENCFF664WOZ/@@download/ENCFF664WOZ.bam hg19 released low read length ENCFF102UZW bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF807MUK 1373062457 ENCODE Processing Pipeline 8900af8dab51824166235783101362c5 https://www.encodeproject.org/files/ENCFF102UZW/@@download/ENCFF102UZW.bam hg19 released low read length ENCFF894EBL bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 4754374 ENCODE Processing Pipeline f41e8db986ad83789c943f560b85abbf https://www.encodeproject.org/files/ENCFF894EBL/@@download/ENCFF894EBL.bed.gz hg19 released low read length ENCFF567MQM bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 4952334 ENCODE Processing Pipeline 14bcc8dd6f42a19f81af4b33a4bb1706 https://www.encodeproject.org/files/ENCFF567MQM/@@download/ENCFF567MQM.bed.gz hg19 released low read length ENCFF251KCB bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 6273441 ENCODE Processing Pipeline 9c95a12bb6470624d88f7e5dbbe1edfa https://www.encodeproject.org/files/ENCFF251KCB/@@download/ENCFF251KCB.bed.gz hg19 released low read length ENCFF196ZMU bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF567MQM 11091337 ENCODE Processing Pipeline af5b34df6b15e17cf6afc4cd368e28d1 https://www.encodeproject.org/files/ENCFF196ZMU/@@download/ENCFF196ZMU.bigBed hg19 released low read length ENCFF025MGM bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF894EBL 11182595 ENCODE Processing Pipeline c5efaa83b5cbb04123f7359fd0757d13 https://www.encodeproject.org/files/ENCFF025MGM/@@download/ENCFF025MGM.bigBed hg19 released low read length ENCFF361YUB bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF251KCB 13573802 ENCODE Processing Pipeline effb25defc6b8a07a5ecbf48ef4d1be2 https://www.encodeproject.org/files/ENCFF361YUB/@@download/ENCFF361YUB.bigBed hg19 released low read length ENCFF226KLT bed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF251KCB, ENCFF567MQM, ENCFF894EBL 148589 ENCODE Processing Pipeline 58df8cb1f9bd480a3ec373e6a4b131f4 https://www.encodeproject.org/files/ENCFF226KLT/@@download/ENCFF226KLT.bed.gz hg19 released low read length ENCFF019LOX bigBed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF226KLT 352935 ENCODE Processing Pipeline e0ee3e3fd3d5f56224bbe467dfa19f28 https://www.encodeproject.org/files/ENCFF019LOX/@@download/ENCFF019LOX.bigBed hg19 released low read length ENCFF208TRU bed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF251KCB, ENCFF567MQM, ENCFF894EBL 167235 ENCODE Processing Pipeline b6b7a380d838641fb514a9c1fd6b89e3 https://www.encodeproject.org/files/ENCFF208TRU/@@download/ENCFF208TRU.bed.gz hg19 released low read length ENCFF736THE bigBed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF208TRU 380161 ENCODE Processing Pipeline 47e31125270cc9342835f8e0a4aac420 https://www.encodeproject.org/files/ENCFF736THE/@@download/ENCFF736THE.bigBed hg19 released low read length ENCFF002EAN fastq reads ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1112977358 Michael Snyder, Stanford 53cd755e4f6b00ccaef31cdbb73d4d19 SRA:SRR5111693 https://www.encodeproject.org/files/ENCFF002EAN/@@download/ENCFF002EAN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length ENCFF002EAO fastq reads ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 1096108808 Michael Snyder, Stanford e22c8ef22d0033a737bb97b0b833e034 SRA:SRR5111694 https://www.encodeproject.org/files/ENCFF002EAO/@@download/ENCFF002EAO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length ENCFF319QTJ bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF807MUK 922732709 ENCODE Processing Pipeline 14690f3d5d16f6523798787c782a02b2 https://www.encodeproject.org/files/ENCFF319QTJ/@@download/ENCFF319QTJ.bam hg19 released low read length ENCFF370WJQ bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF807MUK 953526907 ENCODE Processing Pipeline 019e2b6dc8da51b97b6a0ce7a6988051 https://www.encodeproject.org/files/ENCFF370WJQ/@@download/ENCFF370WJQ.bam hg19 released low read length ENCFF980WUK bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 518060803 ENCODE Processing Pipeline f25686fd59cdb67fb614b57a3062c2de https://www.encodeproject.org/files/ENCFF980WUK/@@download/ENCFF980WUK.bigWig hg19 released low read length ENCFF637TIO bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 501751685 ENCODE Processing Pipeline 1b0214d27c5ce4d9e03cefef7a61bdbe https://www.encodeproject.org/files/ENCFF637TIO/@@download/ENCFF637TIO.bigWig hg19 released low read length ENCFF202BJI bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 1023621787 ENCODE Processing Pipeline ada73c3b5eb929a80133d5845424f623 https://www.encodeproject.org/files/ENCFF202BJI/@@download/ENCFF202BJI.bigWig hg19 released low read length ENCFF048FWM bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 463840323 ENCODE Processing Pipeline 8c99111f59a3e4e70993faab0e175ff1 https://www.encodeproject.org/files/ENCFF048FWM/@@download/ENCFF048FWM.bigWig hg19 released low read length ENCFF358RQJ bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 482679281 ENCODE Processing Pipeline d210bce386ba6ef944274ec0884e2644 https://www.encodeproject.org/files/ENCFF358RQJ/@@download/ENCFF358RQJ.bigWig hg19 released low read length ENCFF807ESQ bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 4977549 ENCODE Processing Pipeline ae6242bd8eff5d4f51e1ba2d55c776e3 https://www.encodeproject.org/files/ENCFF807ESQ/@@download/ENCFF807ESQ.bed.gz hg19 archived low read length ENCFF686ASL bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 1055954188 ENCODE Processing Pipeline aba3026852dee55f6b921479d4d7717a https://www.encodeproject.org/files/ENCFF686ASL/@@download/ENCFF686ASL.bigWig hg19 released low read length ENCFF459WLH bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF620ZVU 13581665 ENCODE Processing Pipeline 1cac6b6537792ed504135cffc2b0d5e4 https://www.encodeproject.org/files/ENCFF459WLH/@@download/ENCFF459WLH.bigBed hg19 archived low read length ENCFF078PIZ bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF750GSF 11168198 ENCODE Processing Pipeline 589ba6ca3b0c9770e3e21bdfcd0e2247 https://www.encodeproject.org/files/ENCFF078PIZ/@@download/ENCFF078PIZ.bigBed hg19 archived low read length ENCFF750GSF bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 5126280 ENCODE Processing Pipeline 30f8100ecdac18918e2280d601391371 https://www.encodeproject.org/files/ENCFF750GSF/@@download/ENCFF750GSF.bed.gz hg19 archived low read length ENCFF620ZVU bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319QTJ, ENCFF370WJQ, ENCFF426WJH, ENCFF849LYY 6444079 ENCODE Processing Pipeline 34761b365c335215cb13889fd8953ae0 https://www.encodeproject.org/files/ENCFF620ZVU/@@download/ENCFF620ZVU.bed.gz hg19 archived low read length ENCFF090IVX bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF807ESQ 11308262 ENCODE Processing Pipeline a67a8ae7fdd5c0458cf0bb7620229f92 https://www.encodeproject.org/files/ENCFF090IVX/@@download/ENCFF090IVX.bigBed hg19 archived low read length ENCFF209LCU bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF643CGH 1378586785 ENCODE Processing Pipeline 0314cf42cd98b5d70903b80300abb059 https://www.encodeproject.org/files/ENCFF209LCU/@@download/ENCFF209LCU.bam GRCh38 released low read length ENCFF601BPA bam unfiltered alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF643CGH 1345362083 ENCODE Processing Pipeline 230eda7dced2eae0d3961ec9eb9625e7 https://www.encodeproject.org/files/ENCFF601BPA/@@download/ENCFF601BPA.bam GRCh38 released low read length ENCFF019MMH bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF643CGH 954224706 ENCODE Processing Pipeline 16b381910d9219bcf7e87fb38fbeb58d https://www.encodeproject.org/files/ENCFF019MMH/@@download/ENCFF019MMH.bam GRCh38 released low read length ENCFF057WQP bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF643CGH 922985472 ENCODE Processing Pipeline 04ba1f1cedde58ff0f136a73a67f6659 https://www.encodeproject.org/files/ENCFF057WQP/@@download/ENCFF057WQP.bam GRCh38 released low read length ENCFF791KTN bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF019MMH, ENCFF872ERZ 518479670 ENCODE Processing Pipeline 53847216e7ca330079e758715abe46d0 https://www.encodeproject.org/files/ENCFF791KTN/@@download/ENCFF791KTN.bigWig GRCh38 released low read length ENCFF664TDT bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF057WQP, ENCFF272DEZ 661542341 ENCODE Processing Pipeline 1d01880385bad75ac8c1f94034dcaf66 https://www.encodeproject.org/files/ENCFF664TDT/@@download/ENCFF664TDT.bigWig GRCh38 released low read length ENCFF017NDW bigWig signal p-value ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019MMH, ENCFF057WQP, ENCFF272DEZ, ENCFF872ERZ 1053712961 ENCODE Processing Pipeline dccba5b3648934cb152bfc3259a2ae66 https://www.encodeproject.org/files/ENCFF017NDW/@@download/ENCFF017NDW.bigWig GRCh38 released low read length ENCFF261WEE bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF019MMH, ENCFF872ERZ 462718383 ENCODE Processing Pipeline cd96c4451be6cb02fef032a7211b69af https://www.encodeproject.org/files/ENCFF261WEE/@@download/ENCFF261WEE.bigWig GRCh38 released low read length ENCFF662RDI bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF057WQP, ENCFF272DEZ 485630836 ENCODE Processing Pipeline 6c73792ec77add0a5cce531346497c60 https://www.encodeproject.org/files/ENCFF662RDI/@@download/ENCFF662RDI.bigWig GRCh38 released low read length ENCFF654LQC bigWig fold change over control ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019MMH, ENCFF057WQP, ENCFF272DEZ, ENCFF872ERZ 1055989369 ENCODE Processing Pipeline 702fe19aa422dc4783aa5966d2fc766e https://www.encodeproject.org/files/ENCFF654LQC/@@download/ENCFF654LQC.bigWig GRCh38 released low read length ENCFF700ZFS bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF057WQP, ENCFF272DEZ 4951270 ENCODE Processing Pipeline a788b7fb58995f693a4e94402ac0cebf https://www.encodeproject.org/files/ENCFF700ZFS/@@download/ENCFF700ZFS.bed.gz GRCh38 released low read length ENCFF243TTR bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF700ZFS 11095766 ENCODE Processing Pipeline 7a73e8465bf934d28b8a0cd33a287762 https://www.encodeproject.org/files/ENCFF243TTR/@@download/ENCFF243TTR.bigBed GRCh38 released low read length ENCFF887RSH bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF778JPG 11194591 ENCODE Processing Pipeline c40e36195c851d4f572203bd09af986f https://www.encodeproject.org/files/ENCFF887RSH/@@download/ENCFF887RSH.bigBed GRCh38 released low read length ENCFF920FXJ bigBed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF618OGV 13576912 ENCODE Processing Pipeline 1c0bb9cd94a4a62d768df87ba8bf1878 https://www.encodeproject.org/files/ENCFF920FXJ/@@download/ENCFF920FXJ.bigBed GRCh38 released low read length ENCFF778JPG bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF019MMH, ENCFF872ERZ 4762920 ENCODE Processing Pipeline e3e6e181cf9e670981941a45d179cdd7 https://www.encodeproject.org/files/ENCFF778JPG/@@download/ENCFF778JPG.bed.gz GRCh38 released low read length ENCFF618OGV bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF019MMH, ENCFF057WQP, ENCFF272DEZ, ENCFF872ERZ 6270426 ENCODE Processing Pipeline 7432f2d2041b1e8dbce43ab251d1302a https://www.encodeproject.org/files/ENCFF618OGV/@@download/ENCFF618OGV.bed.gz GRCh38 released low read length ENCFF309XXF bed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF618OGV, ENCFF700ZFS, ENCFF778JPG 147982 ENCODE Processing Pipeline 29421a9a553912448b5e4903f894cf14 https://www.encodeproject.org/files/ENCFF309XXF/@@download/ENCFF309XXF.bed.gz GRCh38 released low read length ENCFF158HWE bigBed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF309XXF 352992 ENCODE Processing Pipeline 67d1a9fdb9f225ae548f41d661022fa2 https://www.encodeproject.org/files/ENCFF158HWE/@@download/ENCFF158HWE.bigBed GRCh38 released low read length ENCFF722QBB bed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF618OGV, ENCFF700ZFS, ENCFF778JPG 169749 ENCODE Processing Pipeline 7495549277113024c9267a026394e52d https://www.encodeproject.org/files/ENCFF722QBB/@@download/ENCFF722QBB.bed.gz GRCh38 released low read length ENCFF587KER bigBed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF722QBB 384110 ENCODE Processing Pipeline d7d519b950bc329a3d61520c5a81a396 https://www.encodeproject.org/files/ENCFF587KER/@@download/ENCFF587KER.bigBed GRCh38 released low read length ENCFF937AQB bigBed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF062INM 257371 ENCODE Processing Pipeline 364fd5e241d0ebac697804c59b13bc0f https://www.encodeproject.org/files/ENCFF937AQB/@@download/ENCFF937AQB.bigBed hg19 archived low read length ENCFF062INM bed narrowPeak conservative idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF620ZVU, ENCFF750GSF, ENCFF807ESQ 128437 ENCODE Processing Pipeline 1606a1f74db0a10503d65a03ceaaa2c9 https://www.encodeproject.org/files/ENCFF062INM/@@download/ENCFF062INM.bed.gz hg19 archived low read length ENCFF895YBG bed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF620ZVU, ENCFF750GSF, ENCFF807ESQ 144516 ENCODE Processing Pipeline c72d579bd05ba4d5ba639a7d22b58cb4 https://www.encodeproject.org/files/ENCFF895YBG/@@download/ENCFF895YBG.bed.gz hg19 archived low read length ENCFF354VJB bigBed narrowPeak optimal idr thresholded peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF895YBG 276574 ENCODE Processing Pipeline 6caf72e7807bf023462d08a66bc15c21 https://www.encodeproject.org/files/ENCFF354VJB/@@download/ENCFF354VJB.bigBed hg19 archived low read length ENCFF444LAR fastq reads ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 1 ENCFF344XLB 1842352154 Michael Snyder, Stanford 753b632c13fff036a20186fc402369d9 https://www.encodeproject.org/files/ENCFF444LAR/@@download/ENCFF444LAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF344XLB fastq reads ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 2 ENCFF444LAR 1861051731 Michael Snyder, Stanford b034626f3074fb74228f1a2089c3f0f4 https://www.encodeproject.org/files/ENCFF344XLB/@@download/ENCFF344XLB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF579LDG bam unfiltered alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF344XLB, ENCFF444LAR, ENCFF643CGH 3849336343 ENCODE Processing Pipeline 41b27c39618abdd1d83c1dfbde3cf1c1 https://www.encodeproject.org/files/ENCFF579LDG/@@download/ENCFF579LDG.bam GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF542YIP bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF344XLB, ENCFF444LAR, ENCFF807MUK 3377503030 ENCODE Processing Pipeline 92ab8fccacd995c5c195846ecbc3b275 https://www.encodeproject.org/files/ENCFF542YIP/@@download/ENCFF542YIP.bam hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF290ALI bam unfiltered alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF344XLB, ENCFF444LAR, ENCFF807MUK 3844290256 ENCODE Processing Pipeline f0a4e4fc44c8dc5cf8b9f628dbf52ad6 https://www.encodeproject.org/files/ENCFF290ALI/@@download/ENCFF290ALI.bam hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF225QIR bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF344XLB, ENCFF444LAR, ENCFF643CGH 3380322571 ENCODE Processing Pipeline 91196f820b05021d1ebcca83c0597daa https://www.encodeproject.org/files/ENCFF225QIR/@@download/ENCFF225QIR.bam GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF349WZK bigWig signal p-value ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF542YIP 1324308178 ENCODE Processing Pipeline 16e5dcb00a4a49ccee9001779f90c8b4 https://www.encodeproject.org/files/ENCFF349WZK/@@download/ENCFF349WZK.bigWig hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF667ERB bigWig fold change over control ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF225QIR 1187091430 ENCODE Processing Pipeline 471cdfae4aec863e08fb77e515803a8d https://www.encodeproject.org/files/ENCFF667ERB/@@download/ENCFF667ERB.bigWig GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF376ABQ bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF225QIR 6400935 ENCODE Processing Pipeline a7cd8d2bb4344055315af10cb8e1e5d2 https://www.encodeproject.org/files/ENCFF376ABQ/@@download/ENCFF376ABQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF032QOF bigWig signal p-value ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF225QIR 1098984427 ENCODE Processing Pipeline 5bb44fb8be52408cb7b9f8a02321a436 https://www.encodeproject.org/files/ENCFF032QOF/@@download/ENCFF032QOF.bigWig GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF431WLT bigBed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF376ABQ 11371270 ENCODE Processing Pipeline f8f385341f384af0a300f1d2206f0553 https://www.encodeproject.org/files/ENCFF431WLT/@@download/ENCFF431WLT.bigBed GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF955OPV bigWig fold change over control ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF542YIP 1189574486 ENCODE Processing Pipeline 220400aecc69134e0d1ad60537a4b7f5 https://www.encodeproject.org/files/ENCFF955OPV/@@download/ENCFF955OPV.bigWig hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF014QCQ bigBed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF468YQB 11355284 ENCODE Processing Pipeline 6b157e2c20f667aa137c9b59f673288c https://www.encodeproject.org/files/ENCFF014QCQ/@@download/ENCFF014QCQ.bigBed hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF262XBU fastq reads ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 1 ENCFF189ZSY 2252436840 Michael Snyder, Stanford b58404ec3b9a3288014de119582bab93 https://www.encodeproject.org/files/ENCFF262XBU/@@download/ENCFF262XBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF189ZSY fastq reads ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 2 ENCFF262XBU 2254431444 Michael Snyder, Stanford 5cbabf1aeb423c8369aca3fb83f4f732 https://www.encodeproject.org/files/ENCFF189ZSY/@@download/ENCFF189ZSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF543QBI bam unfiltered alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF189ZSY, ENCFF262XBU, ENCFF643CGH 4526121215 ENCODE Processing Pipeline 7e07d353e2d562d1213c34df7bc0f831 https://www.encodeproject.org/files/ENCFF543QBI/@@download/ENCFF543QBI.bam GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF168FQB bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF189ZSY, ENCFF262XBU, ENCFF643CGH 4055959403 ENCODE Processing Pipeline a967362b76d4a0d23c64daa685095997 https://www.encodeproject.org/files/ENCFF168FQB/@@download/ENCFF168FQB.bam GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF929PJZ bam unfiltered alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF189ZSY, ENCFF262XBU, ENCFF807MUK 4519743390 ENCODE Processing Pipeline cf75d124b23f22b5e57dccfa501be82a https://www.encodeproject.org/files/ENCFF929PJZ/@@download/ENCFF929PJZ.bam hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF593HGL bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF189ZSY, ENCFF262XBU, ENCFF807MUK 4056124465 ENCODE Processing Pipeline 67d659fe1d32eb9d8bef289920787618 https://www.encodeproject.org/files/ENCFF593HGL/@@download/ENCFF593HGL.bam hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF602JNY bigWig signal p-value ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF168FQB 1236330063 ENCODE Processing Pipeline e1e6daea2a5ef32fa83bd41dd26985a8 https://www.encodeproject.org/files/ENCFF602JNY/@@download/ENCFF602JNY.bigWig GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF022QJM bigWig signal p-value ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF593HGL 1278662646 ENCODE Processing Pipeline 2f976a01d6a656ba87de3c1b756298bf https://www.encodeproject.org/files/ENCFF022QJM/@@download/ENCFF022QJM.bigWig hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF038NHR bigWig signal p-value ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF168FQB, ENCFF225QIR 1463857919 ENCODE Processing Pipeline 49311123473eafefe025c0c1d5df57f8 https://www.encodeproject.org/files/ENCFF038NHR/@@download/ENCFF038NHR.bigWig GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF401INX bigWig signal p-value ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF542YIP, ENCFF593HGL 1407834364 ENCODE Processing Pipeline 4399cee77338b3a392f128aac7618583 https://www.encodeproject.org/files/ENCFF401INX/@@download/ENCFF401INX.bigWig hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF880YRF bed narrowPeak optimal idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF126UZX, ENCFF322ZZN, ENCFF376ABQ, ENCFF419RSJ 179876 ENCODE Processing Pipeline f8d4068a8f1e89859c3b550b229d2c29 https://www.encodeproject.org/files/ENCFF880YRF/@@download/ENCFF880YRF.bed.gz GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF764GQO bed narrowPeak conservative idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF468YQB, ENCFF495ICA, ENCFF742QVY 97849 ENCODE Processing Pipeline 0e5da86c3453498873452d2deb80e711 https://www.encodeproject.org/files/ENCFF764GQO/@@download/ENCFF764GQO.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF519DQU bed narrowPeak conservative idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF126UZX, ENCFF322ZZN, ENCFF376ABQ, ENCFF419RSJ 97340 ENCODE Processing Pipeline 540d792a9c26a31f175570c0b812551e https://www.encodeproject.org/files/ENCFF519DQU/@@download/ENCFF519DQU.bed.gz GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF742QVY bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF593HGL 6516160 ENCODE Processing Pipeline 4289acf52cedc6b18d7cd31dd9344bf5 https://www.encodeproject.org/files/ENCFF742QVY/@@download/ENCFF742QVY.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF892SSY bigWig fold change over control ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF168FQB 1278767852 ENCODE Processing Pipeline ebdb67fe2533b5afbd1d67ba11eaef99 https://www.encodeproject.org/files/ENCFF892SSY/@@download/ENCFF892SSY.bigWig GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF469FBI bigWig fold change over control ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF168FQB, ENCFF225QIR 1814948168 ENCODE Processing Pipeline 6dc5ad5c80d53e5d8f31e9b9250538f5 https://www.encodeproject.org/files/ENCFF469FBI/@@download/ENCFF469FBI.bigWig GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF534WQJ bigBed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF322ZZN 13511971 ENCODE Processing Pipeline 01dd368fe3bd2b0165af12199665ac88 https://www.encodeproject.org/files/ENCFF534WQJ/@@download/ENCFF534WQJ.bigBed GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF876WVD bigBed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF126UZX 13346707 ENCODE Processing Pipeline 7580918a2494d3ce7099ca5380c67e31 https://www.encodeproject.org/files/ENCFF876WVD/@@download/ENCFF876WVD.bigBed GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF614XEJ bigWig fold change over control ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF542YIP, ENCFF593HGL 1800051729 ENCODE Processing Pipeline 1f2bde3103944e5e112f2c39dcd65763 https://www.encodeproject.org/files/ENCFF614XEJ/@@download/ENCFF614XEJ.bigWig hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF154LQF bigWig fold change over control ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF593HGL 1274869223 ENCODE Processing Pipeline 3db6b0261db6ae89e4801b8729cb345b https://www.encodeproject.org/files/ENCFF154LQF/@@download/ENCFF154LQF.bigWig hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF322ZZN bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF168FQB 6512588 ENCODE Processing Pipeline 6199de7224cd0c95821d127cc05206a5 https://www.encodeproject.org/files/ENCFF322ZZN/@@download/ENCFF322ZZN.bed.gz GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF501ZRX bigBed narrowPeak conservative idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF519DQU 231775 ENCODE Processing Pipeline 59a8eaca119938eb2686a0f34333381c https://www.encodeproject.org/files/ENCFF501ZRX/@@download/ENCFF501ZRX.bigBed GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF420CWN bigBed narrowPeak optimal idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF880YRF 358749 ENCODE Processing Pipeline 6639466d898db85aac13ad74d03328bb https://www.encodeproject.org/files/ENCFF420CWN/@@download/ENCFF420CWN.bigBed GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF126UZX bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF168FQB, ENCFF225QIR 6980808 ENCODE Processing Pipeline e81e8b2a7950d60b928d713b532c0e23 https://www.encodeproject.org/files/ENCFF126UZX/@@download/ENCFF126UZX.bed.gz GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF468YQB bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF542YIP 6446867 ENCODE Processing Pipeline f4e6540bc9c6f00a11e787faea37cc5d https://www.encodeproject.org/files/ENCFF468YQB/@@download/ENCFF468YQB.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF495ICA bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF542YIP, ENCFF593HGL 7018110 ENCODE Processing Pipeline c952b9e937c8b19b6a865524b7b4e486 https://www.encodeproject.org/files/ENCFF495ICA/@@download/ENCFF495ICA.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF885CMN bigBed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF742QVY 13497387 ENCODE Processing Pipeline d57a0854e9dda65f7752418ccc04501a https://www.encodeproject.org/files/ENCFF885CMN/@@download/ENCFF885CMN.bigBed hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF025BJJ bigBed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF495ICA 13339552 ENCODE Processing Pipeline bd5acc36fbca2b42168829d0c987bd43 https://www.encodeproject.org/files/ENCFF025BJJ/@@download/ENCFF025BJJ.bigBed hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF054LVE bed narrowPeak optimal idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF468YQB, ENCFF495ICA, ENCFF742QVY 181804 ENCODE Processing Pipeline 5bc33b794fbae98252426d8ca90bfad6 https://www.encodeproject.org/files/ENCFF054LVE/@@download/ENCFF054LVE.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF298CUT bigBed narrowPeak conservative idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF764GQO 232459 ENCODE Processing Pipeline be90528586069e1188a797ac7cc75f96 https://www.encodeproject.org/files/ENCFF298CUT/@@download/ENCFF298CUT.bigBed hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF716UBI bigBed narrowPeak optimal idr thresholded peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF054LVE 360773 ENCODE Processing Pipeline eeb22bad39fb4de7d3ef4731df6ac15f https://www.encodeproject.org/files/ENCFF716UBI/@@download/ENCFF716UBI.bigBed hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF035BJT fastq reads ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF778EKH 2856283165 Michael Snyder, Stanford 0fd5d9504dbb932ba60cf0b089049f1d SRA:SRR6213128 https://www.encodeproject.org/files/ENCFF035BJT/@@download/ENCFF035BJT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF778EKH fastq reads ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF035BJT 2899303074 Michael Snyder, Stanford 87e2f386aa3829c5f9951ffacece21d8 SRA:SRR6213128 https://www.encodeproject.org/files/ENCFF778EKH/@@download/ENCFF778EKH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF414KXU fastq reads ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF015KAY 3014640523 Michael Snyder, Stanford 3e1ba06d976820b620a2f595602b05ef SRA:SRR6213129 https://www.encodeproject.org/files/ENCFF414KXU/@@download/ENCFF414KXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF015KAY fastq reads ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF414KXU 3066732269 Michael Snyder, Stanford 2e2a3698044f806518736fd34c7aa5d4 SRA:SRR6213129 https://www.encodeproject.org/files/ENCFF015KAY/@@download/ENCFF015KAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF324BHS bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF015KAY, ENCFF414KXU, ENCFF807MUK 5572435017 ENCODE Processing Pipeline dd1a6e90ad5cddb04e02cb3569066a9b https://www.encodeproject.org/files/ENCFF324BHS/@@download/ENCFF324BHS.bam hg19 released ENCFF867YPG bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF035BJT, ENCFF778EKH, ENCFF807MUK 5310895400 ENCODE Processing Pipeline 55ae938fcc7c00af25ba647926305736 https://www.encodeproject.org/files/ENCFF867YPG/@@download/ENCFF867YPG.bam hg19 released ENCFF501AQI bigWig signal p-value ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF867YPG 1157614362 ENCODE Processing Pipeline 32ad2e24eaf225f6a110bcbc05c8e58d https://www.encodeproject.org/files/ENCFF501AQI/@@download/ENCFF501AQI.bigWig hg19 released ENCFF990BPY bigWig signal p-value ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF324BHS, ENCFF999EQI 1086787414 ENCODE Processing Pipeline 59446ec2dea19bb831e2caa6e108cc8d https://www.encodeproject.org/files/ENCFF990BPY/@@download/ENCFF990BPY.bigWig hg19 released ENCFF354QYY bigWig signal p-value ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF324BHS, ENCFF449NNE, ENCFF867YPG, ENCFF999EQI 1880529147 ENCODE Processing Pipeline e78d1dfba893e455ed1c01bd06d1690b https://www.encodeproject.org/files/ENCFF354QYY/@@download/ENCFF354QYY.bigWig hg19 released ENCFF239AAR bigWig fold change over control ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF867YPG 1248151585 ENCODE Processing Pipeline 05f580f7ef7602c43c08eb5c70c8620d https://www.encodeproject.org/files/ENCFF239AAR/@@download/ENCFF239AAR.bigWig hg19 released ENCFF027HCV bigWig fold change over control ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF324BHS, ENCFF999EQI 1162500517 ENCODE Processing Pipeline 80c300d22aa55f7f848fcb5c90c125fb https://www.encodeproject.org/files/ENCFF027HCV/@@download/ENCFF027HCV.bigWig hg19 released ENCFF857BOL bigWig fold change over control ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF324BHS, ENCFF449NNE, ENCFF867YPG, ENCFF999EQI 2218621495 ENCODE Processing Pipeline 07fd6e7e4c66a217fb599784fb1c685f https://www.encodeproject.org/files/ENCFF857BOL/@@download/ENCFF857BOL.bigWig hg19 released ENCFF789HZR bam unfiltered alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF035BJT, ENCFF643CGH, ENCFF778EKH 6241327963 ENCODE Processing Pipeline 423b1d5bb00f481fb85a18c3633b5ba1 https://www.encodeproject.org/files/ENCFF789HZR/@@download/ENCFF789HZR.bam GRCh38 released ENCFF775MUG bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF035BJT, ENCFF643CGH, ENCFF778EKH 5324936808 ENCODE Processing Pipeline 6a2c8165f69f8b265082f80cfcd8cc2a https://www.encodeproject.org/files/ENCFF775MUG/@@download/ENCFF775MUG.bam GRCh38 released ENCFF966VDA bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF015KAY, ENCFF414KXU, ENCFF643CGH 5586436143 ENCODE Processing Pipeline b2ae8cf7a59fa510a2c690fa72f4a74c https://www.encodeproject.org/files/ENCFF966VDA/@@download/ENCFF966VDA.bam GRCh38 released ENCFF558JGW bam unfiltered alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF015KAY, ENCFF414KXU, ENCFF643CGH 6536992789 ENCODE Processing Pipeline cc4dd4abf6811474e58b486e56fd11f5 https://www.encodeproject.org/files/ENCFF558JGW/@@download/ENCFF558JGW.bam GRCh38 released ENCFF797KAZ bigWig signal p-value ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF190EPQ, ENCFF775MUG 1311323155 ENCODE Processing Pipeline 71817d7fe91847943c45f05bdaeb64b8 https://www.encodeproject.org/files/ENCFF797KAZ/@@download/ENCFF797KAZ.bigWig GRCh38 released ENCFF697SSC bigWig signal p-value ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF950AXC, ENCFF966VDA 956050949 ENCODE Processing Pipeline f6025dedf0f091ac28454dac7ff4b575 https://www.encodeproject.org/files/ENCFF697SSC/@@download/ENCFF697SSC.bigWig GRCh38 released ENCFF988ZCY bigWig signal p-value ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF190EPQ, ENCFF775MUG, ENCFF950AXC, ENCFF966VDA 1846344588 ENCODE Processing Pipeline 3e943183d06d1a5f64910b60bf8a7911 https://www.encodeproject.org/files/ENCFF988ZCY/@@download/ENCFF988ZCY.bigWig GRCh38 released ENCFF388QTX bigWig fold change over control ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF190EPQ, ENCFF775MUG 1257901447 ENCODE Processing Pipeline a9508082897201c02c16598c47493d11 https://www.encodeproject.org/files/ENCFF388QTX/@@download/ENCFF388QTX.bigWig GRCh38 released ENCFF019MME bigWig fold change over control ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF950AXC, ENCFF966VDA 1210085808 ENCODE Processing Pipeline 0ca45e5909d0e60cc82ab080037a38e9 https://www.encodeproject.org/files/ENCFF019MME/@@download/ENCFF019MME.bigWig GRCh38 released ENCFF382LEQ bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF190EPQ, ENCFF775MUG, ENCFF950AXC, ENCFF966VDA 7043561 ENCODE Processing Pipeline a03279dccaac94c85a5bc69d7fd34339 https://www.encodeproject.org/files/ENCFF382LEQ/@@download/ENCFF382LEQ.bed.gz GRCh38 released ENCFF704DME bed narrowPeak conservative idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF325HZC, ENCFF382LEQ, ENCFF419RSJ, ENCFF510SHE 902814 ENCODE Processing Pipeline fed3541e32688dae4b526f6169cf1adb https://www.encodeproject.org/files/ENCFF704DME/@@download/ENCFF704DME.bed.gz GRCh38 released ENCFF071FBD bigBed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF382LEQ 11662398 ENCODE Processing Pipeline b70fea8dbfd273921e086302764506e9 https://www.encodeproject.org/files/ENCFF071FBD/@@download/ENCFF071FBD.bigBed GRCh38 released ENCFF384TVY bigBed narrowPeak conservative idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF704DME 1473346 ENCODE Processing Pipeline f0ec5d4c5b6556a1c9ece12f94e8eae6 https://www.encodeproject.org/files/ENCFF384TVY/@@download/ENCFF384TVY.bigBed GRCh38 released ENCFF325HZC bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF190EPQ, ENCFF775MUG 6704739 ENCODE Processing Pipeline f7f4d680ca53b8aab8c9c0f8a1b8125f https://www.encodeproject.org/files/ENCFF325HZC/@@download/ENCFF325HZC.bed.gz GRCh38 released ENCFF805ROD bigBed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF325HZC 11660117 ENCODE Processing Pipeline d85b0a2aa725c634ba7cd34e7a2b2fdf https://www.encodeproject.org/files/ENCFF805ROD/@@download/ENCFF805ROD.bigBed GRCh38 released ENCFF348LLH bigWig fold change over control ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF190EPQ, ENCFF775MUG, ENCFF950AXC, ENCFF966VDA 2221593494 ENCODE Processing Pipeline da605ef5df370939c7bcd66f227a1388 https://www.encodeproject.org/files/ENCFF348LLH/@@download/ENCFF348LLH.bigWig GRCh38 released ENCFF510SHE bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF950AXC, ENCFF966VDA 6652946 ENCODE Processing Pipeline 04707abe09fffa9e2b1dc34a8235e72e https://www.encodeproject.org/files/ENCFF510SHE/@@download/ENCFF510SHE.bed.gz GRCh38 released ENCFF353KHN bigBed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF510SHE 11451845 ENCODE Processing Pipeline 01a169ae9dcf6d318ff48e31c1a8c844 https://www.encodeproject.org/files/ENCFF353KHN/@@download/ENCFF353KHN.bigBed GRCh38 released ENCFF259BJR bed narrowPeak optimal idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF325HZC, ENCFF382LEQ, ENCFF419RSJ, ENCFF510SHE 1200029 ENCODE Processing Pipeline 1eda1a15c74278c6ad71b3eac974f499 https://www.encodeproject.org/files/ENCFF259BJR/@@download/ENCFF259BJR.bed.gz GRCh38 released ENCFF591QTU bigBed narrowPeak optimal idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF259BJR 2374780 ENCODE Processing Pipeline ee426f142de34ee9bbc7eb70a329fab0 https://www.encodeproject.org/files/ENCFF591QTU/@@download/ENCFF591QTU.bigBed GRCh38 released ENCFF488MIG bam unfiltered alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF035BJT, ENCFF778EKH, ENCFF807MUK 6230202772 ENCODE Processing Pipeline 3e8fb228527d9b97c9e46688355086c6 https://www.encodeproject.org/files/ENCFF488MIG/@@download/ENCFF488MIG.bam hg19 released ENCFF607VNC bam unfiltered alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF015KAY, ENCFF414KXU, ENCFF807MUK 6526177172 ENCODE Processing Pipeline 05fcb576a3326b2a73e3ff1bc222161a https://www.encodeproject.org/files/ENCFF607VNC/@@download/ENCFF607VNC.bam hg19 released ENCFF516CRP bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF867YPG 6692903 ENCODE Processing Pipeline 4cd0006be07720f9547a251755293e61 https://www.encodeproject.org/files/ENCFF516CRP/@@download/ENCFF516CRP.bed.gz hg19 released ENCFF459HJZ bed narrowPeak conservative idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF144UTI, ENCFF516CRP, ENCFF532LNM 934238 ENCODE Processing Pipeline fa41136888bdd86d40c567ed0a63bdca https://www.encodeproject.org/files/ENCFF459HJZ/@@download/ENCFF459HJZ.bed.gz hg19 released ENCFF956WLP bigBed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF532LNM 11804946 ENCODE Processing Pipeline 4985ab58284890e002a267bfd8ba009a https://www.encodeproject.org/files/ENCFF956WLP/@@download/ENCFF956WLP.bigBed hg19 released ENCFF144UTI bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF324BHS, ENCFF999EQI 6848962 ENCODE Processing Pipeline 6f0113d9d68f87fd86f951dafcfb078f https://www.encodeproject.org/files/ENCFF144UTI/@@download/ENCFF144UTI.bed.gz hg19 released ENCFF911KXR bigBed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF144UTI 13984313 ENCODE Processing Pipeline 4663ef6736ebb5711c054d5780c010e7 https://www.encodeproject.org/files/ENCFF911KXR/@@download/ENCFF911KXR.bigBed hg19 released ENCFF030NXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF459HJZ 1964211 ENCODE Processing Pipeline 57939a14c1213946790be1a303100c08 https://www.encodeproject.org/files/ENCFF030NXZ/@@download/ENCFF030NXZ.bigBed hg19 released ENCFF725EAP bigBed narrowPeak optimal idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF683KBO 2442602 ENCODE Processing Pipeline f45bb9f316d3708c9d4c34801e28a4cf https://www.encodeproject.org/files/ENCFF725EAP/@@download/ENCFF725EAP.bigBed hg19 released ENCFF532LNM bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF324BHS, ENCFF449NNE, ENCFF867YPG, ENCFF999EQI 7165409 ENCODE Processing Pipeline db89fc4611b67596793adcc3b2ec9796 https://www.encodeproject.org/files/ENCFF532LNM/@@download/ENCFF532LNM.bed.gz hg19 released ENCFF736HWN bigBed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF516CRP 11646296 ENCODE Processing Pipeline f5636dc70329c995532d0e069eca3a58 https://www.encodeproject.org/files/ENCFF736HWN/@@download/ENCFF736HWN.bigBed hg19 released ENCFF683KBO bed narrowPeak optimal idr thresholded peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF144UTI, ENCFF516CRP, ENCFF532LNM 1245223 ENCODE Processing Pipeline cc14e80a87319acc940932944771f108 https://www.encodeproject.org/files/ENCFF683KBO/@@download/ENCFF683KBO.bed.gz hg19 released ENCFF261LPC bam unfiltered alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 100 ENCFF077SPQ, ENCFF383EJJ, ENCFF807MUK 5282064933 ENCODE Processing Pipeline 7b1e25af7452b93c51d905817ffaded7 https://www.encodeproject.org/files/ENCFF261LPC/@@download/ENCFF261LPC.bam hg19 released ENCFF943VPJ bam unfiltered alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 100 ENCFF086VLI, ENCFF397FZD, ENCFF807MUK 4962232551 ENCODE Processing Pipeline 32ccd034412b338f23efe611040ebd57 https://www.encodeproject.org/files/ENCFF943VPJ/@@download/ENCFF943VPJ.bam hg19 released ENCFF397FZD fastq reads ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 1 100 paired-ended 2 ENCFF086VLI 2372041768 Michael Snyder, Stanford 3d8ccb74ed6f732b3635ecc32833f082 SRA:SRR5112232 https://www.encodeproject.org/files/ENCFF397FZD/@@download/ENCFF397FZD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF086VLI fastq reads ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 1 100 paired-ended 1 ENCFF397FZD 2269603183 Michael Snyder, Stanford 66e08de1a29268bf9f57506507c46e92 SRA:SRR5112232 https://www.encodeproject.org/files/ENCFF086VLI/@@download/ENCFF086VLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF383EJJ fastq reads ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 1 100 paired-ended 1 ENCFF077SPQ 2425393058 Michael Snyder, Stanford 7e490dd4fdb341e175af379c4676454e SRA:SRR5112233 https://www.encodeproject.org/files/ENCFF383EJJ/@@download/ENCFF383EJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF077SPQ fastq reads ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 1 100 paired-ended 2 ENCFF383EJJ 2551880790 Michael Snyder, Stanford 43b2c621d4e00e9b7418f5b1df90cc67 SRA:SRR5112233 https://www.encodeproject.org/files/ENCFF077SPQ/@@download/ENCFF077SPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF204XLM bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 100 ENCFF077SPQ, ENCFF383EJJ, ENCFF807MUK 4564416436 ENCODE Processing Pipeline 71f5335d0d8406345f879f3227e8f545 https://www.encodeproject.org/files/ENCFF204XLM/@@download/ENCFF204XLM.bam hg19 released ENCFF158LEE bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 100 ENCFF086VLI, ENCFF397FZD, ENCFF807MUK 4318343333 ENCODE Processing Pipeline 3a2b441dbf101330824363504ddf2bf8 https://www.encodeproject.org/files/ENCFF158LEE/@@download/ENCFF158LEE.bam hg19 released ENCFF032RUN bigWig signal p-value ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF158LEE, ENCFF581ZJL 1096932072 ENCODE Processing Pipeline d474a7a5727e0d3b462c15805f6e27e8 https://www.encodeproject.org/files/ENCFF032RUN/@@download/ENCFF032RUN.bigWig hg19 released ENCFF367ETF bigWig signal p-value ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF051LWI, ENCFF204XLM 1073382315 ENCODE Processing Pipeline a8d413f7ec14f8d70d7e43e0b16b1573 https://www.encodeproject.org/files/ENCFF367ETF/@@download/ENCFF367ETF.bigWig hg19 released ENCFF072YSM bigWig signal p-value ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF051LWI, ENCFF158LEE, ENCFF204XLM, ENCFF581ZJL 1941700809 ENCODE Processing Pipeline c0a1dea939494dfbad68c020696f86a6 https://www.encodeproject.org/files/ENCFF072YSM/@@download/ENCFF072YSM.bigWig hg19 released ENCFF077DRA bigWig fold change over control ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF158LEE, ENCFF581ZJL 1150775695 ENCODE Processing Pipeline 62b43d77c50b253ef063af785e12eafe https://www.encodeproject.org/files/ENCFF077DRA/@@download/ENCFF077DRA.bigWig hg19 released ENCFF385ERB bigWig fold change over control ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF051LWI, ENCFF204XLM 1145778323 ENCODE Processing Pipeline 84808f0ed371fbd8e47f8dc91a858b71 https://www.encodeproject.org/files/ENCFF385ERB/@@download/ENCFF385ERB.bigWig hg19 released ENCFF754ZCQ bigWig fold change over control ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF051LWI, ENCFF158LEE, ENCFF204XLM, ENCFF581ZJL 2102280786 ENCODE Processing Pipeline 8d8ed74e669b8b13bef6d52f97b658b6 https://www.encodeproject.org/files/ENCFF754ZCQ/@@download/ENCFF754ZCQ.bigWig hg19 released ENCFF902RHR bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF158LEE, ENCFF581ZJL 7166913 ENCODE Processing Pipeline c79d8243bfba48199c241beffa9d9377 https://www.encodeproject.org/files/ENCFF902RHR/@@download/ENCFF902RHR.bed.gz hg19 released ENCFF452CEM bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF051LWI, ENCFF204XLM 7193583 ENCODE Processing Pipeline db70e968a32451c5251dbc5acdc4e646 https://www.encodeproject.org/files/ENCFF452CEM/@@download/ENCFF452CEM.bed.gz hg19 released ENCFF548OKF bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF051LWI, ENCFF158LEE, ENCFF204XLM, ENCFF581ZJL 7178717 ENCODE Processing Pipeline 5da3dc4f11b407e1074dcdf274dc4ad4 https://www.encodeproject.org/files/ENCFF548OKF/@@download/ENCFF548OKF.bed.gz hg19 released ENCFF658XXU bigBed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF902RHR 12198892 ENCODE Processing Pipeline 1891899f5af92fef342fd00f5f8ee579 https://www.encodeproject.org/files/ENCFF658XXU/@@download/ENCFF658XXU.bigBed hg19 released ENCFF649WPP bigBed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF452CEM 12108987 ENCODE Processing Pipeline f01c2ee595e5d0d93542bc0091f1b19a https://www.encodeproject.org/files/ENCFF649WPP/@@download/ENCFF649WPP.bigBed hg19 released ENCFF155AHC bigBed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF548OKF 11759139 ENCODE Processing Pipeline 08d225222390b9b99895aa18fd0ad9c9 https://www.encodeproject.org/files/ENCFF155AHC/@@download/ENCFF155AHC.bigBed hg19 released ENCFF795AYV bigBed narrowPeak optimal idr thresholded peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF484HCG 1109540 ENCODE Processing Pipeline 6e680ece8e571ac67e8788535c1058de https://www.encodeproject.org/files/ENCFF795AYV/@@download/ENCFF795AYV.bigBed hg19 released ENCFF484HCG bed narrowPeak optimal idr thresholded peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF452CEM, ENCFF548OKF, ENCFF902RHR 545686 ENCODE Processing Pipeline edb704f30f5be1dd1284828f92f6a8ed https://www.encodeproject.org/files/ENCFF484HCG/@@download/ENCFF484HCG.bed.gz hg19 released ENCFF625EVD bam unfiltered alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 100 ENCFF086VLI, ENCFF397FZD, ENCFF643CGH 4965052350 ENCODE Processing Pipeline c8539f4f6967a9d68f43dea7cc9966c8 https://www.encodeproject.org/files/ENCFF625EVD/@@download/ENCFF625EVD.bam GRCh38 released ENCFF256DMO bam unfiltered alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 100 ENCFF077SPQ, ENCFF383EJJ, ENCFF643CGH 5284747511 ENCODE Processing Pipeline 53f3edfe82fb02530a7923ade6562f64 https://www.encodeproject.org/files/ENCFF256DMO/@@download/ENCFF256DMO.bam GRCh38 released ENCFF079TBV bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 100 ENCFF086VLI, ENCFF397FZD, ENCFF643CGH 4320981477 ENCODE Processing Pipeline 7fb7d2db0d8c8414118057705d6a26b7 https://www.encodeproject.org/files/ENCFF079TBV/@@download/ENCFF079TBV.bam GRCh38 released ENCFF772XIR bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 100 ENCFF077SPQ, ENCFF383EJJ, ENCFF643CGH 4567137992 ENCODE Processing Pipeline e7cdead9c70c303cd6edc3fe107b7ea0 https://www.encodeproject.org/files/ENCFF772XIR/@@download/ENCFF772XIR.bam GRCh38 released ENCFF304OUU bigWig signal p-value ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF079TBV, ENCFF910IKB 1065664428 ENCODE Processing Pipeline 3eeff7653b0733f10af01e749d17d1b6 https://www.encodeproject.org/files/ENCFF304OUU/@@download/ENCFF304OUU.bigWig GRCh38 released ENCFF942HRD bigWig signal p-value ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF227IZS, ENCFF772XIR 1211970489 ENCODE Processing Pipeline 1b1a30cfd6cea72e1d1b82c49eb25992 https://www.encodeproject.org/files/ENCFF942HRD/@@download/ENCFF942HRD.bigWig GRCh38 released ENCFF535QQM bigWig signal p-value ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF079TBV, ENCFF227IZS, ENCFF772XIR, ENCFF910IKB 1615415466 ENCODE Processing Pipeline aea43dbacff7fa83bee1d88f3ea8b80c https://www.encodeproject.org/files/ENCFF535QQM/@@download/ENCFF535QQM.bigWig GRCh38 released ENCFF930GBO bigWig fold change over control ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF079TBV, ENCFF910IKB 1139385191 ENCODE Processing Pipeline b5e9fd36f7316dc449a5f927b4bb819d https://www.encodeproject.org/files/ENCFF930GBO/@@download/ENCFF930GBO.bigWig GRCh38 released ENCFF394NZY bigWig fold change over control ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF227IZS, ENCFF772XIR 1133308493 ENCODE Processing Pipeline 040337f8934cf8179abb49d712eeea28 https://www.encodeproject.org/files/ENCFF394NZY/@@download/ENCFF394NZY.bigWig GRCh38 released ENCFF564JHK bigWig fold change over control ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF079TBV, ENCFF227IZS, ENCFF772XIR, ENCFF910IKB 2087245860 ENCODE Processing Pipeline 8dc91874778dc26db51f030eb41a1b3e https://www.encodeproject.org/files/ENCFF564JHK/@@download/ENCFF564JHK.bigWig GRCh38 released ENCFF986PTF bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF079TBV, ENCFF910IKB 7110923 ENCODE Processing Pipeline 6ae8ef77cf4ff11989591a6ae4bc6d3e https://www.encodeproject.org/files/ENCFF986PTF/@@download/ENCFF986PTF.bed.gz GRCh38 released ENCFF680XEG bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF227IZS, ENCFF772XIR 7119635 ENCODE Processing Pipeline afe45810bce07a58c7319d9e41dfc2d1 https://www.encodeproject.org/files/ENCFF680XEG/@@download/ENCFF680XEG.bed.gz GRCh38 released ENCFF710LBM bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF079TBV, ENCFF227IZS, ENCFF772XIR, ENCFF910IKB 7188257 ENCODE Processing Pipeline 8b5cc6a9a4c3247b7e707846b9ce23e0 https://www.encodeproject.org/files/ENCFF710LBM/@@download/ENCFF710LBM.bed.gz GRCh38 released ENCFF897QFQ bigBed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF986PTF 12162775 ENCODE Processing Pipeline 06c8e69aee47555ac2a64ccebcf34751 https://www.encodeproject.org/files/ENCFF897QFQ/@@download/ENCFF897QFQ.bigBed GRCh38 released ENCFF237EIS bigBed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF680XEG 12024067 ENCODE Processing Pipeline 2c85d9ddb6f5368ae1314e14d1f6e995 https://www.encodeproject.org/files/ENCFF237EIS/@@download/ENCFF237EIS.bigBed GRCh38 released ENCFF846ZDV bigBed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF710LBM 11767010 ENCODE Processing Pipeline 933e1e9240cfafece56721b1a96d0294 https://www.encodeproject.org/files/ENCFF846ZDV/@@download/ENCFF846ZDV.bigBed GRCh38 released ENCFF721DPQ bed narrowPeak optimal idr thresholded peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF680XEG, ENCFF710LBM, ENCFF986PTF 544728 ENCODE Processing Pipeline e42a19231a68bed191cd2e322f964da2 https://www.encodeproject.org/files/ENCFF721DPQ/@@download/ENCFF721DPQ.bed.gz GRCh38 released ENCFF781NME bigBed narrowPeak optimal idr thresholded peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF721DPQ 1111645 ENCODE Processing Pipeline 30fa57f0881e8ab10a135a78ab657f6b https://www.encodeproject.org/files/ENCFF781NME/@@download/ENCFF781NME.bigBed GRCh38 released ENCFF461VFX fastq reads ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF588IKS 2862442938 Michael Snyder, Stanford fc01c122aec008c88c96747d23f75ad6 SRA:SRR6212980 https://www.encodeproject.org/files/ENCFF461VFX/@@download/ENCFF461VFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance ENCFF929RZN fastq reads ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF843QDR 2400219294 Michael Snyder, Stanford 47b145a30912a2bb0f0704baab159197 SRA:SRR6212981 https://www.encodeproject.org/files/ENCFF929RZN/@@download/ENCFF929RZN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance ENCFF843QDR fastq reads ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF929RZN 2329663183 Michael Snyder, Stanford 0a6c867a6816db20441ff8ac3dd64855 SRA:SRR6212981 https://www.encodeproject.org/files/ENCFF843QDR/@@download/ENCFF843QDR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance ENCFF588IKS fastq reads ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF461VFX 2786532424 Michael Snyder, Stanford 5a01b27589e0d59780a142cf4fce5211 SRA:SRR6212980 https://www.encodeproject.org/files/ENCFF588IKS/@@download/ENCFF588IKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance ENCFF572HWU bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF807MUK, ENCFF843QDR, ENCFF929RZN 4271305115 ENCODE Processing Pipeline e7d53a9d3b3d90e5fff1ee0c5489d9d0 https://www.encodeproject.org/files/ENCFF572HWU/@@download/ENCFF572HWU.bam hg19 released borderline replicate concordance ENCFF824TEZ bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF461VFX, ENCFF588IKS, ENCFF807MUK 5136765649 ENCODE Processing Pipeline b50b54586734c44b4fdc9eab54559d25 https://www.encodeproject.org/files/ENCFF824TEZ/@@download/ENCFF824TEZ.bam hg19 released borderline replicate concordance ENCFF927QKB bigWig signal p-value ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF572HWU 1153141189 ENCODE Processing Pipeline b71e1fc6996959e7341738a1a4880b74 https://www.encodeproject.org/files/ENCFF927QKB/@@download/ENCFF927QKB.bigWig hg19 released borderline replicate concordance ENCFF304ESI bigWig signal p-value ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF824TEZ, ENCFF999EQI 1001909750 ENCODE Processing Pipeline ef6b7c1adfd1d283a8906c5f472e4608 https://www.encodeproject.org/files/ENCFF304ESI/@@download/ENCFF304ESI.bigWig hg19 released borderline replicate concordance ENCFF102GFZ bigWig fold change over control ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF572HWU 1092313104 ENCODE Processing Pipeline 149135fda7aca7d5d7a020eae230f376 https://www.encodeproject.org/files/ENCFF102GFZ/@@download/ENCFF102GFZ.bigWig hg19 released borderline replicate concordance ENCFF162LPM bigWig fold change over control ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF824TEZ, ENCFF999EQI 1138973724 ENCODE Processing Pipeline 17e5d9f08b387e5a8d3221825d3473cc https://www.encodeproject.org/files/ENCFF162LPM/@@download/ENCFF162LPM.bigWig hg19 released borderline replicate concordance ENCFF254MCO bam unfiltered alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF643CGH, ENCFF843QDR, ENCFF929RZN 5115125152 ENCODE Processing Pipeline 4abd0d4d8ee959cfd8b88185edeec5b6 https://www.encodeproject.org/files/ENCFF254MCO/@@download/ENCFF254MCO.bam GRCh38 released borderline replicate concordance ENCFF091QWO bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF643CGH, ENCFF843QDR, ENCFF929RZN 4282527492 ENCODE Processing Pipeline d794b09177cfded64fa44d93cb314f3f https://www.encodeproject.org/files/ENCFF091QWO/@@download/ENCFF091QWO.bam GRCh38 released borderline replicate concordance ENCFF213BPX bam unfiltered alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF461VFX, ENCFF588IKS, ENCFF643CGH 6196875807 ENCODE Processing Pipeline a23382fb2e5d40b8b2b948a4d2f003de https://www.encodeproject.org/files/ENCFF213BPX/@@download/ENCFF213BPX.bam GRCh38 released borderline replicate concordance ENCFF694VBR bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF461VFX, ENCFF588IKS, ENCFF643CGH 5151478365 ENCODE Processing Pipeline faf5d6a1adb654d560ffb580ddeb5ccc https://www.encodeproject.org/files/ENCFF694VBR/@@download/ENCFF694VBR.bam GRCh38 released borderline replicate concordance ENCFF965MLE bigWig signal p-value ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF091QWO, ENCFF190EPQ 1059735291 ENCODE Processing Pipeline 9f6b1c2d8521d8ed6810c0a6e21ec2a4 https://www.encodeproject.org/files/ENCFF965MLE/@@download/ENCFF965MLE.bigWig GRCh38 released borderline replicate concordance ENCFF636FZP bigWig signal p-value ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF694VBR, ENCFF950AXC 936766448 ENCODE Processing Pipeline d26279bb74dded5f795ab18896681ba6 https://www.encodeproject.org/files/ENCFF636FZP/@@download/ENCFF636FZP.bigWig GRCh38 released borderline replicate concordance ENCFF094SIR bigWig fold change over control ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF091QWO, ENCFF190EPQ 1097182209 ENCODE Processing Pipeline ab6843fa845e571bc34ad387840e28aa https://www.encodeproject.org/files/ENCFF094SIR/@@download/ENCFF094SIR.bigWig GRCh38 released borderline replicate concordance ENCFF020WZU bigWig fold change over control ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF694VBR, ENCFF950AXC 1151989297 ENCODE Processing Pipeline 9bd9dfa43bf3e517183e41181ed5e5b2 https://www.encodeproject.org/files/ENCFF020WZU/@@download/ENCFF020WZU.bigWig GRCh38 released borderline replicate concordance ENCFF292VLY bigWig signal p-value ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF091QWO, ENCFF190EPQ, ENCFF694VBR, ENCFF950AXC 1831020220 ENCODE Processing Pipeline 87891825d3ffaaa4d055563eefebde0c https://www.encodeproject.org/files/ENCFF292VLY/@@download/ENCFF292VLY.bigWig GRCh38 released borderline replicate concordance ENCFF064LQT bigWig fold change over control ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF091QWO, ENCFF190EPQ, ENCFF694VBR, ENCFF950AXC 2066481049 ENCODE Processing Pipeline 4d6ae318fff26d015e28d8fcccfa05f6 https://www.encodeproject.org/files/ENCFF064LQT/@@download/ENCFF064LQT.bigWig GRCh38 released borderline replicate concordance ENCFF995IHH bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF091QWO, ENCFF190EPQ 6313989 ENCODE Processing Pipeline 3294690fc8b0ec2c39a1c2646fcb3aab https://www.encodeproject.org/files/ENCFF995IHH/@@download/ENCFF995IHH.bed.gz GRCh38 released borderline replicate concordance ENCFF050YFJ bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF091QWO, ENCFF190EPQ, ENCFF694VBR, ENCFF950AXC 7134079 ENCODE Processing Pipeline eab4f2aa2650cd32959010429e58c99c https://www.encodeproject.org/files/ENCFF050YFJ/@@download/ENCFF050YFJ.bed.gz GRCh38 released borderline replicate concordance ENCFF227XIC bigBed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF995IHH 11874657 ENCODE Processing Pipeline 0617d0fdbd2196d117542aa5cfd78cc7 https://www.encodeproject.org/files/ENCFF227XIC/@@download/ENCFF227XIC.bigBed GRCh38 released borderline replicate concordance ENCFF988QIB bigBed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF749LDF 11561269 ENCODE Processing Pipeline d277fb9452bc48e8157ab87254b2fc77 https://www.encodeproject.org/files/ENCFF988QIB/@@download/ENCFF988QIB.bigBed GRCh38 released borderline replicate concordance ENCFF145FBE bigBed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF050YFJ 12025275 ENCODE Processing Pipeline d41c2aaba81a9ebc24830169f3d3eb3a https://www.encodeproject.org/files/ENCFF145FBE/@@download/ENCFF145FBE.bigBed GRCh38 released borderline replicate concordance ENCFF749LDF bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF694VBR, ENCFF950AXC 6129029 ENCODE Processing Pipeline 989a77133c89214d4cb9460726ec3bfd https://www.encodeproject.org/files/ENCFF749LDF/@@download/ENCFF749LDF.bed.gz GRCh38 released borderline replicate concordance ENCFF089BQU bed narrowPeak optimal idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF050YFJ, ENCFF419RSJ, ENCFF749LDF, ENCFF995IHH 1153266 ENCODE Processing Pipeline d1ba727f9aeb899f0a454df1fc84b35c https://www.encodeproject.org/files/ENCFF089BQU/@@download/ENCFF089BQU.bed.gz GRCh38 released borderline replicate concordance ENCFF515EMR bigBed narrowPeak optimal idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF089BQU 1883821 ENCODE Processing Pipeline 87373b995fbfb29ff9d75f29c39ceb0a https://www.encodeproject.org/files/ENCFF515EMR/@@download/ENCFF515EMR.bigBed GRCh38 released borderline replicate concordance ENCFF737KKO bed narrowPeak conservative idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF050YFJ, ENCFF419RSJ, ENCFF749LDF, ENCFF995IHH 706280 ENCODE Processing Pipeline 7deaa76d30edce0385cb3ac7909ac2ba https://www.encodeproject.org/files/ENCFF737KKO/@@download/ENCFF737KKO.bed.gz GRCh38 released borderline replicate concordance ENCFF383EBJ bigBed narrowPeak conservative idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF737KKO 1310170 ENCODE Processing Pipeline ffc8fe44a4340f313265c3862e47ad13 https://www.encodeproject.org/files/ENCFF383EBJ/@@download/ENCFF383EBJ.bigBed GRCh38 released borderline replicate concordance ENCFF093JPV bam unfiltered alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF807MUK, ENCFF843QDR, ENCFF929RZN 5107319029 ENCODE Processing Pipeline 03211068c70a67ee9cfd2607432e8781 https://www.encodeproject.org/files/ENCFF093JPV/@@download/ENCFF093JPV.bam hg19 released borderline replicate concordance ENCFF669WYU bam unfiltered alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF461VFX, ENCFF588IKS, ENCFF807MUK 6185016679 ENCODE Processing Pipeline f1a7290c4758cec8a7a291aaf7956b73 https://www.encodeproject.org/files/ENCFF669WYU/@@download/ENCFF669WYU.bam hg19 released borderline replicate concordance ENCFF688PTB bigWig fold change over control ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF449NNE, ENCFF572HWU, ENCFF824TEZ, ENCFF999EQI 2062061742 ENCODE Processing Pipeline 947d22a84feb1d68da4517d2ebc0c465 https://www.encodeproject.org/files/ENCFF688PTB/@@download/ENCFF688PTB.bigWig hg19 released borderline replicate concordance ENCFF474JRH bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF572HWU 6300168 ENCODE Processing Pipeline b957779de989bcd5ce86ea5e3d87b7c6 https://www.encodeproject.org/files/ENCFF474JRH/@@download/ENCFF474JRH.bed.gz hg19 released borderline replicate concordance ENCFF680ZBS bigBed narrowPeak conservative idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF215TZZ 1283791 ENCODE Processing Pipeline 3c48effc76aa2dbc4949b740257e64f6 https://www.encodeproject.org/files/ENCFF680ZBS/@@download/ENCFF680ZBS.bigBed hg19 released borderline replicate concordance ENCFF502ZTC bed narrowPeak optimal idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF474JRH, ENCFF731IFM, ENCFF750HPK 1135631 ENCODE Processing Pipeline a6a22b8d5cf6d58a3a27d3b0952f7874 https://www.encodeproject.org/files/ENCFF502ZTC/@@download/ENCFF502ZTC.bed.gz hg19 released borderline replicate concordance ENCFF500CKC bigBed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF750HPK 11627083 ENCODE Processing Pipeline f4144656c665b8f6796ecbdf8dfe8286 https://www.encodeproject.org/files/ENCFF500CKC/@@download/ENCFF500CKC.bigBed hg19 released borderline replicate concordance ENCFF348FOO bigWig signal p-value ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF449NNE, ENCFF572HWU, ENCFF824TEZ, ENCFF999EQI 1918235615 ENCODE Processing Pipeline 3b16aa087594ba7c3398adae190b8878 https://www.encodeproject.org/files/ENCFF348FOO/@@download/ENCFF348FOO.bigWig hg19 released borderline replicate concordance ENCFF760SZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF502ZTC 1851743 ENCODE Processing Pipeline 1e79d8fac31a14f2d357a29cb96578df https://www.encodeproject.org/files/ENCFF760SZQ/@@download/ENCFF760SZQ.bigBed hg19 released borderline replicate concordance ENCFF587TVU bigBed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF474JRH 11844993 ENCODE Processing Pipeline 29b9f3ee431ddc4890a4b0d7310d04a8 https://www.encodeproject.org/files/ENCFF587TVU/@@download/ENCFF587TVU.bigBed hg19 released borderline replicate concordance ENCFF655HJQ bigBed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF731IFM 11951525 ENCODE Processing Pipeline b367d8436f0701681874c2860cb45d04 https://www.encodeproject.org/files/ENCFF655HJQ/@@download/ENCFF655HJQ.bigBed hg19 released borderline replicate concordance ENCFF750HPK bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF824TEZ, ENCFF999EQI 6194499 ENCODE Processing Pipeline 8db57f551c47f3300175716720339e63 https://www.encodeproject.org/files/ENCFF750HPK/@@download/ENCFF750HPK.bed.gz hg19 released borderline replicate concordance ENCFF731IFM bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF449NNE, ENCFF572HWU, ENCFF824TEZ, ENCFF999EQI 7076850 ENCODE Processing Pipeline 697359bc640bfd5d6bad470c404bcfef https://www.encodeproject.org/files/ENCFF731IFM/@@download/ENCFF731IFM.bed.gz hg19 released borderline replicate concordance ENCFF215TZZ bed narrowPeak conservative idr thresholded peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF474JRH, ENCFF731IFM, ENCFF750HPK 691877 ENCODE Processing Pipeline dabd9a30e39c3690219454f301a582a5 https://www.encodeproject.org/files/ENCFF215TZZ/@@download/ENCFF215TZZ.bed.gz hg19 released borderline replicate concordance ENCFF100FQP fastq reads ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 1 75 single-ended 1631972157 Bradley Bernstein, Broad f35df925d6d5abcdc4b072bfc10e6905 SRA:SRR5832681 https://www.encodeproject.org/files/ENCFF100FQP/@@download/ENCFF100FQP.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released borderline replicate concordance ENCFF965ZWE fastq reads ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 1 76 single-ended 1272394178 Bradley Bernstein, Broad 0ecc62a9fd8ccb8ff176c2d1e61e6c0b SRA:SRR5832680 https://www.encodeproject.org/files/ENCFF965ZWE/@@download/ENCFF965ZWE.fastq.gz Illumina HiSeq 2500 /files/ENCFF015ZEK/ released borderline replicate concordance ENCFF679PJD bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF643CGH, ENCFF965ZWE 1550714279 ENCODE Processing Pipeline b94de8929e12ab94484f10c002bfc610 https://www.encodeproject.org/files/ENCFF679PJD/@@download/ENCFF679PJD.bam GRCh38 released borderline replicate concordance ENCFF108NQY bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF643CGH 1949529603 ENCODE Processing Pipeline 539e775b54dceb2d30b2f37f573bc377 https://www.encodeproject.org/files/ENCFF108NQY/@@download/ENCFF108NQY.bam GRCh38 released borderline replicate concordance ENCFF096UHS bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF807MUK, ENCFF965ZWE 1547254646 ENCODE Processing Pipeline f93972319ae5c835dbd39c14f75eb47a https://www.encodeproject.org/files/ENCFF096UHS/@@download/ENCFF096UHS.bam hg19 released borderline replicate concordance ENCFF480CIF bam unfiltered alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF807MUK 1946536198 ENCODE Processing Pipeline 89781cfc008691720e0a1ecdf33131ba https://www.encodeproject.org/files/ENCFF480CIF/@@download/ENCFF480CIF.bam hg19 released borderline replicate concordance ENCFF122ZQQ bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF643CGH, ENCFF965ZWE 1222953700 ENCODE Processing Pipeline 6617e1d49bb15bd9977851607e94771c https://www.encodeproject.org/files/ENCFF122ZQQ/@@download/ENCFF122ZQQ.bam GRCh38 released borderline replicate concordance ENCFF736OGN bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF807MUK, ENCFF965ZWE 1219914247 ENCODE Processing Pipeline dfa22dc33fd495303e71327590f07b24 https://www.encodeproject.org/files/ENCFF736OGN/@@download/ENCFF736OGN.bam hg19 released borderline replicate concordance ENCFF035LOI bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF807MUK 1515046762 ENCODE Processing Pipeline 444eb0c4359be4c60bc34b8887b5b53b https://www.encodeproject.org/files/ENCFF035LOI/@@download/ENCFF035LOI.bam hg19 released borderline replicate concordance ENCFF761QRJ bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF643CGH 1519589168 ENCODE Processing Pipeline 8524cb5e0805bdf97c95a3771064d062 https://www.encodeproject.org/files/ENCFF761QRJ/@@download/ENCFF761QRJ.bam GRCh38 released borderline replicate concordance ENCFF800BRD bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 1004101148 ENCODE Processing Pipeline 765200d551c4ac7994aa832a78f66d61 https://www.encodeproject.org/files/ENCFF800BRD/@@download/ENCFF800BRD.bigWig GRCh38 released borderline replicate concordance ENCFF174FFD bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH 1093326813 ENCODE Processing Pipeline 6a11443d1d262a7130cc1a17bc8f218e https://www.encodeproject.org/files/ENCFF174FFD/@@download/ENCFF174FFD.bigWig GRCh38 released borderline replicate concordance ENCFF573ZOP bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 976274606 ENCODE Processing Pipeline 2e659829f2a8780477f5c8844c4ed42e https://www.encodeproject.org/files/ENCFF573ZOP/@@download/ENCFF573ZOP.bigWig hg19 released borderline replicate concordance ENCFF684ZBQ bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 962775142 ENCODE Processing Pipeline 34e38fabf111c86fd4490d6237142c51 https://www.encodeproject.org/files/ENCFF684ZBQ/@@download/ENCFF684ZBQ.bigWig hg19 released borderline replicate concordance ENCFF447FSL bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 1067239059 ENCODE Processing Pipeline 3f9e5553bc2b0ca2dc9bf91b5a3b77c0 https://www.encodeproject.org/files/ENCFF447FSL/@@download/ENCFF447FSL.bigWig GRCh38 released borderline replicate concordance ENCFF010WEH bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 981124668 ENCODE Processing Pipeline 2b5ce24b87097df64a29883674ea08b7 https://www.encodeproject.org/files/ENCFF010WEH/@@download/ENCFF010WEH.bigWig hg19 released borderline replicate concordance ENCFF388XWW bigWig signal p-value ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 1129280356 ENCODE Processing Pipeline 69ed35404707fbd4b3d6cf6da346fec7 https://www.encodeproject.org/files/ENCFF388XWW/@@download/ENCFF388XWW.bigWig hg19 released borderline replicate concordance ENCFF135SLK bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 910736449 ENCODE Processing Pipeline 33a0d673a5b821825e50ed633d9e0ef8 https://www.encodeproject.org/files/ENCFF135SLK/@@download/ENCFF135SLK.bigWig hg19 released borderline replicate concordance ENCFF565KNB bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 971569538 ENCODE Processing Pipeline dd62f76568380760892dcd2258cee4a3 https://www.encodeproject.org/files/ENCFF565KNB/@@download/ENCFF565KNB.bigWig GRCh38 released borderline replicate concordance ENCFF839ZTV bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH 864878852 ENCODE Processing Pipeline 1bff2be7f52cab1c244dfa4a0aba1355 https://www.encodeproject.org/files/ENCFF839ZTV/@@download/ENCFF839ZTV.bigWig GRCh38 released borderline replicate concordance ENCFF040IUQ bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 6543456 ENCODE Processing Pipeline 971a8b923966697255885d2b1e173751 https://www.encodeproject.org/files/ENCFF040IUQ/@@download/ENCFF040IUQ.bed.gz hg19 released borderline replicate concordance ENCFF783OQX bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF385GVM 11538828 ENCODE Processing Pipeline f1260a72d48c18d1c335cfae1c1959b2 https://www.encodeproject.org/files/ENCFF783OQX/@@download/ENCFF783OQX.bigBed hg19 released borderline replicate concordance ENCFF758SHJ bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF040IUQ 13532147 ENCODE Processing Pipeline 840fb4c0abcdfa66fe6c7cd0b1fe3f15 https://www.encodeproject.org/files/ENCFF758SHJ/@@download/ENCFF758SHJ.bigBed hg19 released borderline replicate concordance ENCFF252WSP bigBed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF355CKA 90377 ENCODE Processing Pipeline 4c2edf9833b790714ddb78f4c5fb6f59 https://www.encodeproject.org/files/ENCFF252WSP/@@download/ENCFF252WSP.bigBed GRCh38 released borderline replicate concordance ENCFF799KZP bed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035ZHH, ENCFF419RSJ, ENCFF929EYT, ENCFF972IEQ 8931 ENCODE Processing Pipeline 44ff40f3cbbb5942096b3bacc95ae072 https://www.encodeproject.org/files/ENCFF799KZP/@@download/ENCFF799KZP.bed.gz GRCh38 released borderline replicate concordance ENCFF387DEN bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 5785437 ENCODE Processing Pipeline 7426178d9d90a5cffc9096eb11cdb189 https://www.encodeproject.org/files/ENCFF387DEN/@@download/ENCFF387DEN.bed.gz hg19 released borderline replicate concordance ENCFF929EYT bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH 5591359 ENCODE Processing Pipeline 231b960f29a265378a68b595abdcf109 https://www.encodeproject.org/files/ENCFF929EYT/@@download/ENCFF929EYT.bed.gz GRCh38 released borderline replicate concordance ENCFF063AIL bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF387DEN 13584588 ENCODE Processing Pipeline 0b71453ec62192493968ef1a968405d7 https://www.encodeproject.org/files/ENCFF063AIL/@@download/ENCFF063AIL.bigBed hg19 released borderline replicate concordance ENCFF948QKK bed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF001TDO, ENCFF040IUQ, ENCFF385GVM, ENCFF387DEN 5677 ENCODE Processing Pipeline 460b13a7706174d975939eb5429a1ec9 https://www.encodeproject.org/files/ENCFF948QKK/@@download/ENCFF948QKK.bed.gz hg19 released borderline replicate concordance ENCFF996RRT bed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF001TDO, ENCFF040IUQ, ENCFF385GVM, ENCFF387DEN 7786 ENCODE Processing Pipeline c0c13bfd576a47fb42d39c92e9b7f9ea https://www.encodeproject.org/files/ENCFF996RRT/@@download/ENCFF996RRT.bed.gz hg19 released borderline replicate concordance ENCFF919GIM bigBed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF996RRT 73978 ENCODE Processing Pipeline 0dff0ed26bc2e12f5dc5b2aa6b92c8ff https://www.encodeproject.org/files/ENCFF919GIM/@@download/ENCFF919GIM.bigBed hg19 released borderline replicate concordance ENCFF972IEQ bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 6354537 ENCODE Processing Pipeline a8e1283c9ee0e5363a34605d585a3893 https://www.encodeproject.org/files/ENCFF972IEQ/@@download/ENCFF972IEQ.bed.gz GRCh38 released borderline replicate concordance ENCFF815VBX bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035ZHH 11503016 ENCODE Processing Pipeline 8d5d3334e7a8d0845b2e6ff5149db5d8 https://www.encodeproject.org/files/ENCFF815VBX/@@download/ENCFF815VBX.bigBed GRCh38 released borderline replicate concordance ENCFF960KLA bigBed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF948QKK 94380 ENCODE Processing Pipeline ed5ad69b110ba85c84f340bbec1e86f2 https://www.encodeproject.org/files/ENCFF960KLA/@@download/ENCFF960KLA.bigBed hg19 released borderline replicate concordance ENCFF323SMQ bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF122ZQQ, ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 1353114053 ENCODE Processing Pipeline f695aa5a5d9792c2b3fa87120568e26e https://www.encodeproject.org/files/ENCFF323SMQ/@@download/ENCFF323SMQ.bigWig GRCh38 released borderline replicate concordance ENCFF385GVM bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 5640136 ENCODE Processing Pipeline 258a05d2711185bbaddd422ce470a14e https://www.encodeproject.org/files/ENCFF385GVM/@@download/ENCFF385GVM.bed.gz hg19 released borderline replicate concordance ENCFF491KSG bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF972IEQ 11442554 ENCODE Processing Pipeline b338322e6c23f70a84006f5f9e7eced6 https://www.encodeproject.org/files/ENCFF491KSG/@@download/ENCFF491KSG.bigBed GRCh38 released borderline replicate concordance ENCFF777QJK bigWig fold change over control ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 1358950907 ENCODE Processing Pipeline 738bd3c4c23d2cffda93815b96f71282 https://www.encodeproject.org/files/ENCFF777QJK/@@download/ENCFF777QJK.bigWig hg19 released borderline replicate concordance ENCFF035ZHH bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF142VHH, ENCFF401XXH, ENCFF761QRJ 5448509 ENCODE Processing Pipeline e7ebdddc19305fb3e99ee14a948832ef https://www.encodeproject.org/files/ENCFF035ZHH/@@download/ENCFF035ZHH.bed.gz GRCh38 released borderline replicate concordance ENCFF548SFS bigBed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF929EYT 11459307 ENCODE Processing Pipeline abf7e364faeb8901b77b22a1f37d5b04 https://www.encodeproject.org/files/ENCFF548SFS/@@download/ENCFF548SFS.bigBed GRCh38 released borderline replicate concordance ENCFF355CKA bed narrowPeak conservative idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF035ZHH, ENCFF419RSJ, ENCFF929EYT, ENCFF972IEQ 6944 ENCODE Processing Pipeline 9298dc4c750503e92cb88121564ea563 https://www.encodeproject.org/files/ENCFF355CKA/@@download/ENCFF355CKA.bed.gz GRCh38 released borderline replicate concordance ENCFF423NOY bigBed narrowPeak optimal idr thresholded peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF799KZP 77287 ENCODE Processing Pipeline abf8b3d028fdc7d802441b9a64cca96e https://www.encodeproject.org/files/ENCFF423NOY/@@download/ENCFF423NOY.bigBed GRCh38 released borderline replicate concordance ENCFF000OJY bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OKL 878051542 Richard Myers, HAIB c569bb6c72f94d8271a79574153a2f7d https://www.encodeproject.org/files/ENCFF000OJY/@@download/ENCFF000OJY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OKA bigBed broadPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAG 216862 Richard Myers, HAIB 867090dd4b83c14ddfa58346fc751616 https://www.encodeproject.org/files/ENCFF000OKA/@@download/ENCFF000OKA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OKB bigBed broadPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAH 604325 Richard Myers, HAIB 791af362501cc28491f35fcd3936bc8d https://www.encodeproject.org/files/ENCFF000OKB/@@download/ENCFF000OKB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OKC bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OKM 766069320 Richard Myers, HAIB 8263b500464fd944bc9bd9272c49f202 https://www.encodeproject.org/files/ENCFF000OKC/@@download/ENCFF000OKC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OKE bigWig raw signal ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 9312298 Richard Myers, HAIB 510390ebf7f54a3e5b0e9d2fba53cad0 https://www.encodeproject.org/files/ENCFF000OKE/@@download/ENCFF000OKE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000OKF bigWig raw signal ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 22199937 Richard Myers, HAIB 37d797679aa2c89558fdf3982b755a0c https://www.encodeproject.org/files/ENCFF000OKF/@@download/ENCFF000OKF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000OKL fastq reads ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 816265139 Richard Myers, HAIB 65b71d6128c71fb7f0c57813f43d4dc1 https://www.encodeproject.org/files/ENCFF000OKL/@@download/ENCFF000OKL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OKM fastq reads ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 744138477 Richard Myers, HAIB 268de799934ff82306c0406c7dfa9ca0 https://www.encodeproject.org/files/ENCFF000OKM/@@download/ENCFF000OKM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UAG bed broadPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 111216 Richard Myers, HAIB 5a3b5c8deec2d4dd968f338b042347c9 https://www.encodeproject.org/files/ENCFF001UAG/@@download/ENCFF001UAG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UAH bed broadPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 358949 Richard Myers, HAIB a1951118c0c1184c9ae6cbfd3da37f25 https://www.encodeproject.org/files/ENCFF001UAH/@@download/ENCFF001UAH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CIL bed narrowPeak optimal idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 280169 ENCODE Consortium Analysis Working Group 35a74f652ae357485e259fe640f840b9 https://www.encodeproject.org/files/ENCFF002CIL/@@download/ENCFF002CIL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF009XFV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIL 661040 ENCODE Consortium ae8eb8f13feb9a256f61456422915419 https://www.encodeproject.org/files/ENCFF009XFV/@@download/ENCFF009XFV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF653KPG bam unfiltered alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKL, ENCFF643CGH 1045777904 ENCODE Processing Pipeline 5a517b8e7f097b1ff89520b950ba7b7b https://www.encodeproject.org/files/ENCFF653KPG/@@download/ENCFF653KPG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF403JXW bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKM, ENCFF643CGH 457008058 ENCODE Processing Pipeline 5c11f35c75ea7388c49490bf54e52d08 https://www.encodeproject.org/files/ENCFF403JXW/@@download/ENCFF403JXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF165NIG bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKL, ENCFF643CGH 533390363 ENCODE Processing Pipeline 2a44619b4248fd5f6f2de337ca92511b https://www.encodeproject.org/files/ENCFF165NIG/@@download/ENCFF165NIG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF563LDE bam unfiltered alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKM, ENCFF643CGH 930911147 ENCODE Processing Pipeline 513d8e7e8bacb20e46ad4d8bb17f4785 https://www.encodeproject.org/files/ENCFF563LDE/@@download/ENCFF563LDE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF278BZC bam unfiltered alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKL, ENCFF807MUK 1057832775 ENCODE Processing Pipeline 647db572f9e7eba767cafea717f6b63d https://www.encodeproject.org/files/ENCFF278BZC/@@download/ENCFF278BZC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF613PVX bam unfiltered alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKM, ENCFF807MUK 930481519 ENCODE Processing Pipeline fdead7a976a48ad924b95942cdad45d0 https://www.encodeproject.org/files/ENCFF613PVX/@@download/ENCFF613PVX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF525DEV bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKM, ENCFF807MUK 453272785 ENCODE Processing Pipeline d88afa83d2ef99db0c1600d37134f0ec https://www.encodeproject.org/files/ENCFF525DEV/@@download/ENCFF525DEV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF656BEN bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKL, ENCFF807MUK 527379667 ENCODE Processing Pipeline 0f1f62598cf379166116639429821da5 https://www.encodeproject.org/files/ENCFF656BEN/@@download/ENCFF656BEN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF283OTD bigWig signal p-value ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF165NIG, ENCFF562XPJ 380362124 ENCODE Processing Pipeline b3f29f9a7da243f8c539f354dbce894b https://www.encodeproject.org/files/ENCFF283OTD/@@download/ENCFF283OTD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF466GJA bigBed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187XSM 10798165 ENCODE Processing Pipeline b04f6d3060e526764ae08819440eb99c https://www.encodeproject.org/files/ENCFF466GJA/@@download/ENCFF466GJA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF878ZBD bigBed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF643IZA 13219380 ENCODE Processing Pipeline af22604ac82be3bdd51f0379f1ff7532 https://www.encodeproject.org/files/ENCFF878ZBD/@@download/ENCFF878ZBD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF836SDC bigWig fold change over control ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF165NIG, ENCFF562XPJ 275576537 ENCODE Processing Pipeline d66424d8d237d12ac00a17252bb64768 https://www.encodeproject.org/files/ENCFF836SDC/@@download/ENCFF836SDC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF791RBX bigWig fold change over control ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF403JXW, ENCFF562XPJ 250258801 ENCODE Processing Pipeline 458e9441f9b898d60835eb5b60346cb8 https://www.encodeproject.org/files/ENCFF791RBX/@@download/ENCFF791RBX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF676CHY bigWig signal p-value ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF165NIG, ENCFF403JXW, ENCFF562XPJ 497280074 ENCODE Processing Pipeline d50677b5a8c9470d32cb40b8acf826a7 https://www.encodeproject.org/files/ENCFF676CHY/@@download/ENCFF676CHY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF100NGU bigBed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF785GHS 10767352 ENCODE Processing Pipeline 0b39589ee443ef95b9b52da459e81dca https://www.encodeproject.org/files/ENCFF100NGU/@@download/ENCFF100NGU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF300KTC bed narrowPeak conservative idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187XSM, ENCFF419RSJ, ENCFF643IZA, ENCFF785GHS 203040 ENCODE Processing Pipeline 3d6e738bba3cdc11bb4d436169364a4d https://www.encodeproject.org/files/ENCFF300KTC/@@download/ENCFF300KTC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF805TVJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF300KTC 430171 ENCODE Processing Pipeline 811ef19edd9363caa43651f4e5b756c9 https://www.encodeproject.org/files/ENCFF805TVJ/@@download/ENCFF805TVJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF555YDV bigWig signal p-value ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF403JXW, ENCFF562XPJ 417769335 ENCODE Processing Pipeline 573c1676f613a259e22e3bb1ecb9c456 https://www.encodeproject.org/files/ENCFF555YDV/@@download/ENCFF555YDV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF294KFW bigWig fold change over control ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF165NIG, ENCFF403JXW, ENCFF562XPJ 447414657 ENCODE Processing Pipeline d6291853c5f629b074502a2cc5fa80b4 https://www.encodeproject.org/files/ENCFF294KFW/@@download/ENCFF294KFW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF785GHS bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF165NIG, ENCFF562XPJ 5002461 ENCODE Processing Pipeline 6311ff507cddf70f27ff965ce1a52e4a https://www.encodeproject.org/files/ENCFF785GHS/@@download/ENCFF785GHS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF187XSM bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF403JXW, ENCFF562XPJ 5119930 ENCODE Processing Pipeline c202240fa721f8c9d15280936cbc603a https://www.encodeproject.org/files/ENCFF187XSM/@@download/ENCFF187XSM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF643IZA bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF165NIG, ENCFF403JXW, ENCFF562XPJ 5899730 ENCODE Processing Pipeline a6fda01895c62e16907b27ee2b8037c2 https://www.encodeproject.org/files/ENCFF643IZA/@@download/ENCFF643IZA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF538VYU bed narrowPeak optimal idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187XSM, ENCFF419RSJ, ENCFF643IZA, ENCFF785GHS 302478 ENCODE Processing Pipeline 6e95b9b4dd12c3117440277b099f1b40 https://www.encodeproject.org/files/ENCFF538VYU/@@download/ENCFF538VYU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF222UVD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF538VYU 568111 ENCODE Processing Pipeline a58db61b1bcf446dca7b0227129bde4f https://www.encodeproject.org/files/ENCFF222UVD/@@download/ENCFF222UVD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF498UJX bigWig fold change over control ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF656BEN 273686712 ENCODE Processing Pipeline bb6c906affc1b9729f288c279546b548 https://www.encodeproject.org/files/ENCFF498UJX/@@download/ENCFF498UJX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF702MAB bigWig fold change over control ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF525DEV 248760931 ENCODE Processing Pipeline 1e78aea4b822c1340ea40bc8b9a92341 https://www.encodeproject.org/files/ENCFF702MAB/@@download/ENCFF702MAB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF244LAU bigWig signal p-value ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF656BEN 390537829 ENCODE Processing Pipeline c404b16477d8e650f12226a2c5047688 https://www.encodeproject.org/files/ENCFF244LAU/@@download/ENCFF244LAU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF994XKT bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376UIU, ENCFF525DEV, ENCFF656BEN 5910444 ENCODE Processing Pipeline 02c5634747f2dc5afc12a7150886cf16 https://www.encodeproject.org/files/ENCFF994XKT/@@download/ENCFF994XKT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF939GWS bigBed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF505NSP 10751666 ENCODE Processing Pipeline 50ae933958fabdf3b21cb160d642b288 https://www.encodeproject.org/files/ENCFF939GWS/@@download/ENCFF939GWS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF895KOH bigWig signal p-value ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF525DEV 469212421 ENCODE Processing Pipeline 8ec801e996153ac7635b997505272920 https://www.encodeproject.org/files/ENCFF895KOH/@@download/ENCFF895KOH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF020GNX bigWig signal p-value ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376UIU, ENCFF525DEV, ENCFF656BEN 499021869 ENCODE Processing Pipeline cda9d8c6af00076d42b2ba80bbbbcbfe https://www.encodeproject.org/files/ENCFF020GNX/@@download/ENCFF020GNX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF855VZH bigWig fold change over control ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376UIU, ENCFF525DEV, ENCFF656BEN 444548878 ENCODE Processing Pipeline cd9c56e48479193febf6e4b353a07754 https://www.encodeproject.org/files/ENCFF855VZH/@@download/ENCFF855VZH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF081JNO bed narrowPeak optimal idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF505NSP, ENCFF519AMH, ENCFF994XKT 295188 ENCODE Processing Pipeline abed55987806d18a1d2d5f121536c7ac https://www.encodeproject.org/files/ENCFF081JNO/@@download/ENCFF081JNO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF344CRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081JNO 559230 ENCODE Processing Pipeline fed8e276d5d9c30bdb8c8a77dce350fb https://www.encodeproject.org/files/ENCFF344CRC/@@download/ENCFF344CRC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF505NSP bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF656BEN 4996117 ENCODE Processing Pipeline 51117687abf0e9a6e9234feeffb4ecc2 https://www.encodeproject.org/files/ENCFF505NSP/@@download/ENCFF505NSP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF519AMH bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF525DEV 4940262 ENCODE Processing Pipeline 5af1f616d2e60b6aeaad413f0f5e6ff5 https://www.encodeproject.org/files/ENCFF519AMH/@@download/ENCFF519AMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF314AXL bed narrowPeak conservative idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF505NSP, ENCFF519AMH, ENCFF994XKT 200982 ENCODE Processing Pipeline 33cde1836873665ceeae0049b0d780f4 https://www.encodeproject.org/files/ENCFF314AXL/@@download/ENCFF314AXL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF308PNT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF314AXL 427483 ENCODE Processing Pipeline 8bd3d525206299229ff03d4d52ee888e https://www.encodeproject.org/files/ENCFF308PNT/@@download/ENCFF308PNT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF960ADZ bigBed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF519AMH 10607147 ENCODE Processing Pipeline 4b9c837ea42ff73736b138c0f4966203 https://www.encodeproject.org/files/ENCFF960ADZ/@@download/ENCFF960ADZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF137TLD bigBed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF994XKT 13230994 ENCODE Processing Pipeline b65259bbe0a94c4ddc7e63734c92c381 https://www.encodeproject.org/files/ENCFF137TLD/@@download/ENCFF137TLD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF581XPN bam unfiltered alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 50 ENCFF300NGT, ENCFF807MUK 1242736381 ENCODE Processing Pipeline ecf93afcb73620e3706d34f11aa59e93 https://www.encodeproject.org/files/ENCFF581XPN/@@download/ENCFF581XPN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF527HEI bam unfiltered alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 50 ENCFF040XLF, ENCFF807MUK 1739461366 ENCODE Processing Pipeline c17d0064b2186f3bca4d18b7ff9ef205 https://www.encodeproject.org/files/ENCFF527HEI/@@download/ENCFF527HEI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF040XLF fastq reads ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 1 50 single-ended 1625724795 Richard Myers, HAIB 9426b610617a37280ab893405384fd8b https://www.encodeproject.org/files/ENCFF040XLF/@@download/ENCFF040XLF.fastq.gz Illumina HiSeq 2000 /files/ENCFF381LXJ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF300NGT fastq reads ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 1 50 single-ended 1249794411 Richard Myers, HAIB 35f4e124e1c906be2c7098bce1eb2b0d SRA:SRR5331329 https://www.encodeproject.org/files/ENCFF300NGT/@@download/ENCFF300NGT.fastq.gz Illumina HiSeq 2000 /files/ENCFF752XCV/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF742ATC bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 50 ENCFF040XLF, ENCFF807MUK 1280192595 ENCODE Processing Pipeline 24690e671e00a0aedade454c7a4f4a6a https://www.encodeproject.org/files/ENCFF742ATC/@@download/ENCFF742ATC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF629SZV bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 50 ENCFF300NGT, ENCFF807MUK 759028555 ENCODE Processing Pipeline ddc715907acfed09a1f86ead24a9a447 https://www.encodeproject.org/files/ENCFF629SZV/@@download/ENCFF629SZV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF949MUR bigWig signal p-value ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF423QHQ, ENCFF629SZV 583261571 ENCODE Processing Pipeline 2daaa582476e04f32fe887c4bd6f5e46 https://www.encodeproject.org/files/ENCFF949MUR/@@download/ENCFF949MUR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF471CFX bigWig fold change over control ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF742ATC, ENCFF853BBD 612795167 ENCODE Processing Pipeline 481675e5d5f4d89f6c447bb29a63d1dc https://www.encodeproject.org/files/ENCFF471CFX/@@download/ENCFF471CFX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF329KUH bigWig fold change over control ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF423QHQ, ENCFF629SZV, ENCFF742ATC, ENCFF853BBD 1160173706 ENCODE Processing Pipeline f198fd670cf42ecfbeebfd0f1f7893b3 https://www.encodeproject.org/files/ENCFF329KUH/@@download/ENCFF329KUH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF224PZN bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF423QHQ, ENCFF629SZV, ENCFF742ATC, ENCFF853BBD 6319612 ENCODE Processing Pipeline e7ca76926aa69f029ebbd4836033ad0b https://www.encodeproject.org/files/ENCFF224PZN/@@download/ENCFF224PZN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF334ZAY bigBed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF224PZN 11442034 ENCODE Processing Pipeline c67942e792139bb2bd77e52001bdd264 https://www.encodeproject.org/files/ENCFF334ZAY/@@download/ENCFF334ZAY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF627DPA bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF742ATC, ENCFF853BBD 5535207 ENCODE Processing Pipeline e4cf89185ac34a2b95c92cdd4cb684b4 https://www.encodeproject.org/files/ENCFF627DPA/@@download/ENCFF627DPA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF321JQC bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF423QHQ, ENCFF629SZV 5150689 ENCODE Processing Pipeline 0ff9e0014613f93f25fa441629d6bad6 https://www.encodeproject.org/files/ENCFF321JQC/@@download/ENCFF321JQC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF934TPA bigBed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF627DPA 11233604 ENCODE Processing Pipeline 05fc5a781a7bbdb63710220e6a19b7c2 https://www.encodeproject.org/files/ENCFF934TPA/@@download/ENCFF934TPA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF793HHN bigWig fold change over control ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF423QHQ, ENCFF629SZV 431477233 ENCODE Processing Pipeline 3cf4edf415087bfecbc975784118c416 https://www.encodeproject.org/files/ENCFF793HHN/@@download/ENCFF793HHN.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF307YSA bigBed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF321JQC 11248994 ENCODE Processing Pipeline ba8653833ddac82686c82fe189f079ef https://www.encodeproject.org/files/ENCFF307YSA/@@download/ENCFF307YSA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF609JQR bigWig signal p-value ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF742ATC, ENCFF853BBD 729467454 ENCODE Processing Pipeline e0a32cc9d0febaa0e8c3133f8d35411a https://www.encodeproject.org/files/ENCFF609JQR/@@download/ENCFF609JQR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF080VXX bigWig signal p-value ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF423QHQ, ENCFF629SZV, ENCFF742ATC, ENCFF853BBD 1362427088 ENCODE Processing Pipeline 2e64fd076d7d2042f27ddd60987d8f92 https://www.encodeproject.org/files/ENCFF080VXX/@@download/ENCFF080VXX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF063HUM bam unfiltered alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 50 ENCFF300NGT, ENCFF643CGH 1247054582 ENCODE Processing Pipeline df15f15558f07303394b3df9c5fde8cd https://www.encodeproject.org/files/ENCFF063HUM/@@download/ENCFF063HUM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF657TOU bam unfiltered alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 50 ENCFF040XLF, ENCFF643CGH 1745392068 ENCODE Processing Pipeline 26cd0b76aad08fdc7f10a3f5e45bde26 https://www.encodeproject.org/files/ENCFF657TOU/@@download/ENCFF657TOU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF619YHC bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 50 ENCFF300NGT, ENCFF643CGH 758680069 ENCODE Processing Pipeline 7010f0101a3076217e4e775d7a9a1d8a https://www.encodeproject.org/files/ENCFF619YHC/@@download/ENCFF619YHC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF952VBJ bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 50 ENCFF040XLF, ENCFF643CGH 1279802556 ENCODE Processing Pipeline b42fd64b2e060f8415271628d38b1401 https://www.encodeproject.org/files/ENCFF952VBJ/@@download/ENCFF952VBJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF909WJC bigWig fold change over control ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF018PFX, ENCFF619YHC 447386039 ENCODE Processing Pipeline b3e82fd602f2683c5a01855c0782ba6c https://www.encodeproject.org/files/ENCFF909WJC/@@download/ENCFF909WJC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF057HOC bigWig signal p-value ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF667XXT, ENCFF952VBJ 807975147 ENCODE Processing Pipeline 6043cffc48b7aee4d0559780e8759e63 https://www.encodeproject.org/files/ENCFF057HOC/@@download/ENCFF057HOC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF331LBS bigWig signal p-value ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF018PFX, ENCFF619YHC 582753137 ENCODE Processing Pipeline 47189ff541aac65a2e5ba1286410f941 https://www.encodeproject.org/files/ENCFF331LBS/@@download/ENCFF331LBS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF710HGC bigWig fold change over control ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF667XXT, ENCFF952VBJ 612400612 ENCODE Processing Pipeline 247627fae7118ae24df8b9257a88197b https://www.encodeproject.org/files/ENCFF710HGC/@@download/ENCFF710HGC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF381AYN bigWig signal p-value ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF018PFX, ENCFF619YHC, ENCFF667XXT, ENCFF952VBJ 1256313729 ENCODE Processing Pipeline 555825d9124a7b033a91066132120dde https://www.encodeproject.org/files/ENCFF381AYN/@@download/ENCFF381AYN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF636YCB bigWig fold change over control ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF018PFX, ENCFF619YHC, ENCFF667XXT, ENCFF952VBJ 1159195093 ENCODE Processing Pipeline dc07bdcf103f879da95ed0df5ea67800 https://www.encodeproject.org/files/ENCFF636YCB/@@download/ENCFF636YCB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF661VPD bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF018PFX, ENCFF619YHC, ENCFF667XXT, ENCFF952VBJ 6165490 ENCODE Processing Pipeline 7c0d67d1388806f4ef308a1b62af1c45 https://www.encodeproject.org/files/ENCFF661VPD/@@download/ENCFF661VPD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF921CNG bigBed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF295GZL 11170645 ENCODE Processing Pipeline bebc048c9df7ef6f072bc3b49998b018 https://www.encodeproject.org/files/ENCFF921CNG/@@download/ENCFF921CNG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF249NHN bigBed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF661VPD 11457248 ENCODE Processing Pipeline ebf1867014759ffe36de9bf887077b9e https://www.encodeproject.org/files/ENCFF249NHN/@@download/ENCFF249NHN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF295GZL bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF667XXT, ENCFF952VBJ 5313158 ENCODE Processing Pipeline 51edad55a2893da3734aae3193aa46e0 https://www.encodeproject.org/files/ENCFF295GZL/@@download/ENCFF295GZL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF346PVR bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF018PFX, ENCFF619YHC 4902270 ENCODE Processing Pipeline 6d4b802d47b10d42421f64d5ce65212c https://www.encodeproject.org/files/ENCFF346PVR/@@download/ENCFF346PVR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF159GJQ bigBed narrowPeak conservative idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF373WRI 127673 ENCODE Processing Pipeline a7214317fbed766feee13b150411815c https://www.encodeproject.org/files/ENCFF159GJQ/@@download/ENCFF159GJQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF823UNN bigBed narrowPeak optimal idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF496RVC 140286 ENCODE Processing Pipeline 780498a743d3f3a0dece4dfe6d1a20e0 https://www.encodeproject.org/files/ENCFF823UNN/@@download/ENCFF823UNN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF496RVC bed narrowPeak optimal idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF295GZL, ENCFF346PVR, ENCFF419RSJ, ENCFF661VPD 48145 ENCODE Processing Pipeline af14a06da83a21f4a90a8ece8732f8ef https://www.encodeproject.org/files/ENCFF496RVC/@@download/ENCFF496RVC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF373WRI bed narrowPeak conservative idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF295GZL, ENCFF346PVR, ENCFF419RSJ, ENCFF661VPD 39103 ENCODE Processing Pipeline de71db5de4ed75eb278c61f738fbdf10 https://www.encodeproject.org/files/ENCFF373WRI/@@download/ENCFF373WRI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF774JQL bigBed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF346PVR 11136491 ENCODE Processing Pipeline b92e0f00fd45ab5d33f75bac71e83f5a https://www.encodeproject.org/files/ENCFF774JQL/@@download/ENCFF774JQL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF007CUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF126PJF 131177 ENCODE Processing Pipeline 603d22e6d0b05fcaf0905bf3872abcd6 https://www.encodeproject.org/files/ENCFF007CUQ/@@download/ENCFF007CUQ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF903FEF bigBed narrowPeak conservative idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF134TUC 96871 ENCODE Processing Pipeline 3309907e6752e741fbc2eaa2bba5a489 https://www.encodeproject.org/files/ENCFF903FEF/@@download/ENCFF903FEF.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF126PJF bed narrowPeak optimal idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF001TDO, ENCFF224PZN, ENCFF321JQC, ENCFF627DPA 42359 ENCODE Processing Pipeline 1cbb892e070ba237950c699124a9f18a https://www.encodeproject.org/files/ENCFF126PJF/@@download/ENCFF126PJF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF134TUC bed narrowPeak conservative idr thresholded peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1, 2 ENCFF001TDO, ENCFF224PZN, ENCFF321JQC, ENCFF627DPA 34013 ENCODE Processing Pipeline 56dcf8f2ad8fea021dee459e11bd9489 https://www.encodeproject.org/files/ENCFF134TUC/@@download/ENCFF134TUC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF128QBI bam unfiltered alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDK, ENCFF807MUK 1337890800 ENCODE Processing Pipeline 4e49b70f2434dcccbc2f77be2f6094e4 https://www.encodeproject.org/files/ENCFF128QBI/@@download/ENCFF128QBI.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF713EEN bam unfiltered alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDM, ENCFF807MUK 1224263866 ENCODE Processing Pipeline 4ff0fce70b3a8b177764877a4f400312 https://www.encodeproject.org/files/ENCFF713EEN/@@download/ENCFF713EEN.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF336KRE bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF316UXC, ENCFF604LKK, ENCFF917NVM, ENCFF939XHK 1030280000 ENCODE Processing Pipeline cfac3b842c5cf8e18578bca02f278d40 https://www.encodeproject.org/files/ENCFF336KRE/@@download/ENCFF336KRE.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF721OKD bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF316UXC, ENCFF604LKK, ENCFF917NVM, ENCFF939XHK 950246052 ENCODE Processing Pipeline a5d1b83257a245ddbd11f854d64b493e https://www.encodeproject.org/files/ENCFF721OKD/@@download/ENCFF721OKD.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF698USR bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF917NVM 4565423 ENCODE Processing Pipeline 5bee42383636d4133d47309fe321a74f https://www.encodeproject.org/files/ENCFF698USR/@@download/ENCFF698USR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF695CJR bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 4894410 ENCODE Processing Pipeline f0447a1732c7b69f42bddd84dc11d400 https://www.encodeproject.org/files/ENCFF695CJR/@@download/ENCFF695CJR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF436EXX bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF316UXC, ENCFF604LKK, ENCFF917NVM, ENCFF939XHK 6407324 ENCODE Processing Pipeline 34d99933a968f30fa725cfd24a97c17c https://www.encodeproject.org/files/ENCFF436EXX/@@download/ENCFF436EXX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF373VVT bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF698USR 10818235 ENCODE Processing Pipeline 4d2b3b7098885e3bdc6fe66f2a82d305 https://www.encodeproject.org/files/ENCFF373VVT/@@download/ENCFF373VVT.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF483YLK bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF695CJR 10984443 ENCODE Processing Pipeline 5706e38e0e38a8afada323e38d108587 https://www.encodeproject.org/files/ENCFF483YLK/@@download/ENCFF483YLK.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF728YCY bed narrowPeak conservative idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF436EXX, ENCFF695CJR, ENCFF698USR 57664 ENCODE Processing Pipeline 80e64a2a10f89c2e416b9b880d1773b2 https://www.encodeproject.org/files/ENCFF728YCY/@@download/ENCFF728YCY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF734EBI bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF436EXX 13381363 ENCODE Processing Pipeline 20de9d697a7377395496b2514977c922 https://www.encodeproject.org/files/ENCFF734EBI/@@download/ENCFF734EBI.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF229COP bigBed narrowPeak conservative idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF728YCY 168784 ENCODE Processing Pipeline 816ba25ed41785b2bcbdfdc40ce56c40 https://www.encodeproject.org/files/ENCFF229COP/@@download/ENCFF229COP.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF708OJJ bed narrowPeak optimal idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF436EXX, ENCFF695CJR, ENCFF698USR 60464 ENCODE Processing Pipeline 1da1a1c1a4cddbaa11dbd4fb1ae9a963 https://www.encodeproject.org/files/ENCFF708OJJ/@@download/ENCFF708OJJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF423LPE bigBed narrowPeak optimal idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF708OJJ 147043 ENCODE Processing Pipeline cec8900fe4aa6d7e226388dbfcd86c1a https://www.encodeproject.org/files/ENCFF423LPE/@@download/ENCFF423LPE.bigBed hg19 released low read length, borderline replicate concordance, low read depth ENCFF002EDK fastq reads ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1086604530 Michael Snyder, Stanford a5793f84642ac2fae88241106c333c03 SRA:SRR5112221 https://www.encodeproject.org/files/ENCFF002EDK/@@download/ENCFF002EDK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECN/ released low read length, borderline replicate concordance, low read depth ENCFF002EDM fastq reads ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 988820947 Michael Snyder, Stanford efbf303327d5f5b66a6801fd9d4d35f9 SRA:SRR5112220 https://www.encodeproject.org/files/ENCFF002EDM/@@download/ENCFF002EDM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECO/ released low read length, borderline replicate concordance, low read depth ENCFF917NVM bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDK, ENCFF807MUK 937589188 ENCODE Processing Pipeline 913a75da3b0b9927cc8dcb5a3ac6635d https://www.encodeproject.org/files/ENCFF917NVM/@@download/ENCFF917NVM.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF604LKK bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDM, ENCFF807MUK 840982575 ENCODE Processing Pipeline 36d1b54c652b08b80a0cc649089dcd0e https://www.encodeproject.org/files/ENCFF604LKK/@@download/ENCFF604LKK.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF835NZS bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF917NVM 548727878 ENCODE Processing Pipeline f14987d8d339e4eb60f1f9e751eb1192 https://www.encodeproject.org/files/ENCFF835NZS/@@download/ENCFF835NZS.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF492MAH bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 525518881 ENCODE Processing Pipeline c18521b322fd497ea76923ecd64ffff8 https://www.encodeproject.org/files/ENCFF492MAH/@@download/ENCFF492MAH.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF886INI bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF316UXC, ENCFF604LKK, ENCFF917NVM, ENCFF939XHK 1047960604 ENCODE Processing Pipeline 31bf954b457b0873302e8007b30e234f https://www.encodeproject.org/files/ENCFF886INI/@@download/ENCFF886INI.bigWig hg19 archived low read length, borderline replicate concordance, low read depth ENCFF444WGE bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF917NVM 429355902 ENCODE Processing Pipeline ef95d936981bfbb4632d162bdce23b4e https://www.encodeproject.org/files/ENCFF444WGE/@@download/ENCFF444WGE.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF285VSM bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 439231134 ENCODE Processing Pipeline d553ce51c1e917d6e2741f423e50b436 https://www.encodeproject.org/files/ENCFF285VSM/@@download/ENCFF285VSM.bigWig hg19 released low read length, borderline replicate concordance, low read depth ENCFF333UAW bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF316UXC, ENCFF604LKK, ENCFF917NVM, ENCFF939XHK 948943529 ENCODE Processing Pipeline 0ef3f4b622e4e1bcdb8f77297ceb4bb2 https://www.encodeproject.org/files/ENCFF333UAW/@@download/ENCFF333UAW.bigWig hg19 archived low read length, borderline replicate concordance, low read depth ENCFF738BNS bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF917NVM 4816349 ENCODE Processing Pipeline e4a1694293dd0c18eb7a21fbff1ca973 https://www.encodeproject.org/files/ENCFF738BNS/@@download/ENCFF738BNS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF566ZXA bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 5116844 ENCODE Processing Pipeline b13346267616a6fd4bb07856b17a66f8 https://www.encodeproject.org/files/ENCFF566ZXA/@@download/ENCFF566ZXA.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF059MAJ bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF316UXC, ENCFF604LKK, ENCFF917NVM, ENCFF939XHK 6606847 ENCODE Processing Pipeline fa0ab943887a7e4ed8989b770b7bba2b https://www.encodeproject.org/files/ENCFF059MAJ/@@download/ENCFF059MAJ.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF561ZBM bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF738BNS 11016036 ENCODE Processing Pipeline f059463faa7672c9c939e6aa0b0f2f9a https://www.encodeproject.org/files/ENCFF561ZBM/@@download/ENCFF561ZBM.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF811FBW bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF566ZXA 11115124 ENCODE Processing Pipeline d1cfab08d5e769a76a7040935490de45 https://www.encodeproject.org/files/ENCFF811FBW/@@download/ENCFF811FBW.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF187GYH bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF059MAJ 13390148 ENCODE Processing Pipeline dd915b7e2e3ae012453808588dc172df https://www.encodeproject.org/files/ENCFF187GYH/@@download/ENCFF187GYH.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF724HJN bam unfiltered alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDM, ENCFF643CGH 1230423543 ENCODE Processing Pipeline afb4eb3def53fcc806a65a11a58f7903 https://www.encodeproject.org/files/ENCFF724HJN/@@download/ENCFF724HJN.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF509RDA bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDM, ENCFF643CGH 840540546 ENCODE Processing Pipeline 19cd5804106948e11e8dbf3daa074ebc https://www.encodeproject.org/files/ENCFF509RDA/@@download/ENCFF509RDA.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF438YHM bam unfiltered alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDK, ENCFF643CGH 1343393311 ENCODE Processing Pipeline d7d87327b8a2f610c128b2c1f53f7bb7 https://www.encodeproject.org/files/ENCFF438YHM/@@download/ENCFF438YHM.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF683FRP bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDK, ENCFF643CGH 937090889 ENCODE Processing Pipeline 4e3c3a4bbd33a054f38e346eded3c305 https://www.encodeproject.org/files/ENCFF683FRP/@@download/ENCFF683FRP.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF734LQM bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF459QXO, ENCFF683FRP 662465743 ENCODE Processing Pipeline e3fc1bbdf300064ac33d3fa75024fd68 https://www.encodeproject.org/files/ENCFF734LQM/@@download/ENCFF734LQM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF091RTN bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF509RDA, ENCFF714ZPY 504558634 ENCODE Processing Pipeline e0fdf64b268192067b8c7b23a88be640 https://www.encodeproject.org/files/ENCFF091RTN/@@download/ENCFF091RTN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF310UVU bigWig signal p-value ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF459QXO, ENCFF509RDA, ENCFF683FRP, ENCFF714ZPY 990009070 ENCODE Processing Pipeline dbe2dc9e4819ffd4a4cf2de30eb1f3f4 https://www.encodeproject.org/files/ENCFF310UVU/@@download/ENCFF310UVU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF210BVX bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF459QXO, ENCFF683FRP 429829324 ENCODE Processing Pipeline 72b889022e9e587603a0ecd83d17591d https://www.encodeproject.org/files/ENCFF210BVX/@@download/ENCFF210BVX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF891VPF bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF509RDA, ENCFF714ZPY 439126060 ENCODE Processing Pipeline 9ac6d4e8e29df0c169075ac872638ba9 https://www.encodeproject.org/files/ENCFF891VPF/@@download/ENCFF891VPF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF236COL bigWig fold change over control ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF459QXO, ENCFF509RDA, ENCFF683FRP, ENCFF714ZPY 948248659 ENCODE Processing Pipeline 9bfcc75a3e57857306db70f6304d0958 https://www.encodeproject.org/files/ENCFF236COL/@@download/ENCFF236COL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF364NFM bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF459QXO, ENCFF683FRP 4524735 ENCODE Processing Pipeline ee729c70a08c397253faa833fcb9636b https://www.encodeproject.org/files/ENCFF364NFM/@@download/ENCFF364NFM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF721EZH bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF459QXO, ENCFF509RDA, ENCFF683FRP, ENCFF714ZPY 6292037 ENCODE Processing Pipeline 52b83ab3ad0a7db431f71fbd28804745 https://www.encodeproject.org/files/ENCFF721EZH/@@download/ENCFF721EZH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF185YLK bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF509RDA, ENCFF714ZPY 4541689 ENCODE Processing Pipeline 68d6681996be035a27c58534d472f5c1 https://www.encodeproject.org/files/ENCFF185YLK/@@download/ENCFF185YLK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF368DRE bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF364NFM 10816849 ENCODE Processing Pipeline aa676f2ca1a39d1c44444a6cfee2fe69 https://www.encodeproject.org/files/ENCFF368DRE/@@download/ENCFF368DRE.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF400FUQ bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF185YLK 10795249 ENCODE Processing Pipeline b586d7b44296dbcabafa72fedf834c94 https://www.encodeproject.org/files/ENCFF400FUQ/@@download/ENCFF400FUQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF550MOH bigBed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF721EZH 13402717 ENCODE Processing Pipeline 7c7043944cef0386d19871cf460a6223 https://www.encodeproject.org/files/ENCFF550MOH/@@download/ENCFF550MOH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF606VIF bed narrowPeak conservative idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF185YLK, ENCFF364NFM, ENCFF419RSJ, ENCFF721EZH 51745 ENCODE Processing Pipeline e196fd14028a044369395d2f1a4f7cd5 https://www.encodeproject.org/files/ENCFF606VIF/@@download/ENCFF606VIF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF973LGI bigBed narrowPeak conservative idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF606VIF 135469 ENCODE Processing Pipeline 9700c453ef4ee7cec1c390d46598bece https://www.encodeproject.org/files/ENCFF973LGI/@@download/ENCFF973LGI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF267DZF bed narrowPeak optimal idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF185YLK, ENCFF364NFM, ENCFF419RSJ, ENCFF721EZH 62680 ENCODE Processing Pipeline 3b47cfcacba93b78d37c7989d8940241 https://www.encodeproject.org/files/ENCFF267DZF/@@download/ENCFF267DZF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF114NXX bigBed narrowPeak optimal idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF267DZF 151019 ENCODE Processing Pipeline f9b08adafbe9dde1b18b5ff81fefe371 https://www.encodeproject.org/files/ENCFF114NXX/@@download/ENCFF114NXX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF599YDB bed narrowPeak conservative idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF059MAJ, ENCFF566ZXA, ENCFF738BNS 46612 ENCODE Processing Pipeline 2f70179dab5dd56554117a6336bc623e https://www.encodeproject.org/files/ENCFF599YDB/@@download/ENCFF599YDB.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF822IUR bigBed narrowPeak conservative idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF599YDB 128227 ENCODE Processing Pipeline 12530229795eca0fdfb2585ba3d72052 https://www.encodeproject.org/files/ENCFF822IUR/@@download/ENCFF822IUR.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF096MYK bed narrowPeak optimal idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF059MAJ, ENCFF566ZXA, ENCFF738BNS 53021 ENCODE Processing Pipeline 9347d93c203883defa053592284c995e https://www.encodeproject.org/files/ENCFF096MYK/@@download/ENCFF096MYK.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF644VAM bigBed narrowPeak optimal idr thresholded peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF096MYK 137446 ENCODE Processing Pipeline 73a937441bccb1ae362c4be4a46f99d1 https://www.encodeproject.org/files/ENCFF644VAM/@@download/ENCFF644VAM.bigBed hg19 archived low read length, borderline replicate concordance, low read depth ENCFF000OUH bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OUU 802896201 Richard Myers, HAIB ec5dc769aacc4058181ab55ea72b44e3 https://www.encodeproject.org/files/ENCFF000OUH/@@download/ENCFF000OUH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OUJ bigBed broadPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCQ 137553 Richard Myers, HAIB 211c556bf045cdcaee43fd82089a6c9e https://www.encodeproject.org/files/ENCFF000OUJ/@@download/ENCFF000OUJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OUK bigBed broadPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCR 117064 Richard Myers, HAIB a835162f4079ceb88e5b95369917b18e https://www.encodeproject.org/files/ENCFF000OUK/@@download/ENCFF000OUK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OUM bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OUX 800698954 Richard Myers, HAIB 9c01cdb1ff38f78267a386b6e0faf1f6 https://www.encodeproject.org/files/ENCFF000OUM/@@download/ENCFF000OUM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OUN bigWig raw signal ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 6475822 Richard Myers, HAIB 09d1200080801e7cdcda25fee75e3e45 https://www.encodeproject.org/files/ENCFF000OUN/@@download/ENCFF000OUN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000OUP bigWig raw signal ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 6673120 Richard Myers, HAIB 09891327324c54421d4c819ca1222d88 https://www.encodeproject.org/files/ENCFF000OUP/@@download/ENCFF000OUP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000OUU fastq reads ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 692440619 Richard Myers, HAIB f0e3b5b527a7d9639c9704280d99d29c https://www.encodeproject.org/files/ENCFF000OUU/@@download/ENCFF000OUU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OUX fastq reads ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 695223022 Richard Myers, HAIB 71090847061a193a021debcb2c45fc13 https://www.encodeproject.org/files/ENCFF000OUX/@@download/ENCFF000OUX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UCQ bed broadPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 66501 Richard Myers, HAIB 029a539b1f05cee82d67ffd42eaa9f02 https://www.encodeproject.org/files/ENCFF001UCQ/@@download/ENCFF001UCQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UCR bed broadPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 50700 Richard Myers, HAIB 926f44ff0330a5675b019fb8a721b790 https://www.encodeproject.org/files/ENCFF001UCR/@@download/ENCFF001UCR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CJN bed narrowPeak optimal idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 103006 ENCODE Consortium Analysis Working Group a5858b2044edbdf6772f3c51c1a42214 https://www.encodeproject.org/files/ENCFF002CJN/@@download/ENCFF002CJN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF391RQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJN 244360 ENCODE Consortium 69eeb2df37d5a3ad3015d3caf5ad1b29 https://www.encodeproject.org/files/ENCFF391RQV/@@download/ENCFF391RQV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF160PEL bam unfiltered alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OUU, ENCFF643CGH 962294368 ENCODE Processing Pipeline 2888d50c55b6734a36b398ae5f6cff91 https://www.encodeproject.org/files/ENCFF160PEL/@@download/ENCFF160PEL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF519XKL bam unfiltered alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OUX, ENCFF643CGH 909388314 ENCODE Processing Pipeline 2df2a0cbfecce3dd5c38755ca680d356 https://www.encodeproject.org/files/ENCFF519XKL/@@download/ENCFF519XKL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF890OOH bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OUX, ENCFF643CGH 368406397 ENCODE Processing Pipeline 44cdbf56e76fb362f4a078683d02725c https://www.encodeproject.org/files/ENCFF890OOH/@@download/ENCFF890OOH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF575DNN bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OUU, ENCFF643CGH 553938593 ENCODE Processing Pipeline e6b90c1b1ffe18cf51aa0b6433c395b5 https://www.encodeproject.org/files/ENCFF575DNN/@@download/ENCFF575DNN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF735MSB bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OUX, ENCFF807MUK 368670106 ENCODE Processing Pipeline 721ecca1b71e307e8f383f5a46a6bb89 https://www.encodeproject.org/files/ENCFF735MSB/@@download/ENCFF735MSB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF314GBK bam unfiltered alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OUX, ENCFF807MUK 905394965 ENCODE Processing Pipeline db870edb0f39473e85670451a5e30cbe https://www.encodeproject.org/files/ENCFF314GBK/@@download/ENCFF314GBK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF714CGS bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OUU, ENCFF807MUK 554170145 ENCODE Processing Pipeline 0e265c6a3802cf99c64a6c768a9abf5e https://www.encodeproject.org/files/ENCFF714CGS/@@download/ENCFF714CGS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF372HNB bam unfiltered alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OUU, ENCFF807MUK 958788190 ENCODE Processing Pipeline d5143ea25ba184cced04775f4675c706 https://www.encodeproject.org/files/ENCFF372HNB/@@download/ENCFF372HNB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF991QNZ bigWig signal p-value ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF890OOH, ENCFF948LKH 420133993 ENCODE Processing Pipeline 667da0743e100b7cba497e45f79f3edd https://www.encodeproject.org/files/ENCFF991QNZ/@@download/ENCFF991QNZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF042THE bigWig signal p-value ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF575DNN, ENCFF948LKH 518629432 ENCODE Processing Pipeline 25fe93d80ddd48780d33aa27fb97805c https://www.encodeproject.org/files/ENCFF042THE/@@download/ENCFF042THE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF257UEB bigWig signal p-value ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF575DNN, ENCFF890OOH, ENCFF948LKH 549211068 ENCODE Processing Pipeline e0361b6e2658658fb6e4388191e2e2d9 https://www.encodeproject.org/files/ENCFF257UEB/@@download/ENCFF257UEB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF996WRR bigWig fold change over control ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF575DNN, ENCFF948LKH 348408509 ENCODE Processing Pipeline 36829fd374d1f8f0f1244949cfe258b8 https://www.encodeproject.org/files/ENCFF996WRR/@@download/ENCFF996WRR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF556LAR bigWig fold change over control ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF890OOH, ENCFF948LKH 236911325 ENCODE Processing Pipeline 7428c628dd5d75b22e4e6fba90207599 https://www.encodeproject.org/files/ENCFF556LAR/@@download/ENCFF556LAR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF941KEV bigWig fold change over control ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF575DNN, ENCFF890OOH, ENCFF948LKH 516160777 ENCODE Processing Pipeline 36b988ed87ef9e4f830afffe306b09b2 https://www.encodeproject.org/files/ENCFF941KEV/@@download/ENCFF941KEV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF993FKD bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF575DNN, ENCFF948LKH 3839878 ENCODE Processing Pipeline 92b1076560edae8ad4dba23aed164f85 https://www.encodeproject.org/files/ENCFF993FKD/@@download/ENCFF993FKD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF172RUG bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF890OOH, ENCFF948LKH 3848340 ENCODE Processing Pipeline ae97b4ff118125f0abb0849452bf7e88 https://www.encodeproject.org/files/ENCFF172RUG/@@download/ENCFF172RUG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF069VMV bigBed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF993FKD 8483354 ENCODE Processing Pipeline 3aac49e018c96d919c9dff10623f11fb https://www.encodeproject.org/files/ENCFF069VMV/@@download/ENCFF069VMV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF814WQX bed narrowPeak conservative idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF172RUG, ENCFF303NCA, ENCFF419RSJ, ENCFF993FKD 81064 ENCODE Processing Pipeline 8f03c55e14d8c9a8796e628510c98800 https://www.encodeproject.org/files/ENCFF814WQX/@@download/ENCFF814WQX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF303NCA bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF575DNN, ENCFF890OOH, ENCFF948LKH 4274508 ENCODE Processing Pipeline 7aa59444cc860a7723a4756bb3a7c145 https://www.encodeproject.org/files/ENCFF303NCA/@@download/ENCFF303NCA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF751NVH bigBed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF172RUG 8381066 ENCODE Processing Pipeline 66d5892f25f26463f95f8bfc04cbf7ae https://www.encodeproject.org/files/ENCFF751NVH/@@download/ENCFF751NVH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF854QYP bigBed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF303NCA 11043139 ENCODE Processing Pipeline ae402789ecdfba4e08ec741ef7123467 https://www.encodeproject.org/files/ENCFF854QYP/@@download/ENCFF854QYP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF582KQD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF814WQX 170416 ENCODE Processing Pipeline 96bf16368e53d444254ba5c9c05746fa https://www.encodeproject.org/files/ENCFF582KQD/@@download/ENCFF582KQD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF368SFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF345IDL 234132 ENCODE Processing Pipeline 64a469bcd6345027f2f5596a28dff6f7 https://www.encodeproject.org/files/ENCFF368SFI/@@download/ENCFF368SFI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF345IDL bed narrowPeak optimal idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF172RUG, ENCFF303NCA, ENCFF419RSJ, ENCFF993FKD 97696 ENCODE Processing Pipeline 42c991348384d45a505fa2cf2a6e35ff https://www.encodeproject.org/files/ENCFF345IDL/@@download/ENCFF345IDL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF400PLE bigWig signal p-value ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF714CGS 438569999 ENCODE Processing Pipeline f02d71a5b4da8ad3a749ec79eb5a8e6f https://www.encodeproject.org/files/ENCFF400PLE/@@download/ENCFF400PLE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF811ACP bigWig fold change over control ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF714CGS 347581739 ENCODE Processing Pipeline 997edc57be0e85c482658eb14bba75c3 https://www.encodeproject.org/files/ENCFF811ACP/@@download/ENCFF811ACP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF125TYF bigWig signal p-value ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF735MSB 421005896 ENCODE Processing Pipeline 42245b9b274a796be5fd9246376d818b https://www.encodeproject.org/files/ENCFF125TYF/@@download/ENCFF125TYF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF145RHD bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF735MSB 3639484 ENCODE Processing Pipeline 2fa180c4b4cbade76705e4d2ff5d81f3 https://www.encodeproject.org/files/ENCFF145RHD/@@download/ENCFF145RHD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF725LDD bed narrowPeak optimal idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF145RHD, ENCFF471LWP, ENCFF605EQP 99200 ENCODE Processing Pipeline 9650ba5ad4127ecca39d1e2d2efc50e9 https://www.encodeproject.org/files/ENCFF725LDD/@@download/ENCFF725LDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF722XXZ bigWig fold change over control ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF735MSB 232300651 ENCODE Processing Pipeline a347e58ccf0a6919635e184fcec769ff https://www.encodeproject.org/files/ENCFF722XXZ/@@download/ENCFF722XXZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF829GZY bigWig fold change over control ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF714CGS, ENCFF735MSB 517169041 ENCODE Processing Pipeline 2a3b2007c9dd9a3553cfed6b942edfb9 https://www.encodeproject.org/files/ENCFF829GZY/@@download/ENCFF829GZY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF719LEM bigBed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF145RHD 7833735 ENCODE Processing Pipeline 55a567e435306d48d3f653750a6bb50a https://www.encodeproject.org/files/ENCFF719LEM/@@download/ENCFF719LEM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF605EQP bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF714CGS 3834254 ENCODE Processing Pipeline 7ce30a006c9a6d57e54f6cb2214e3542 https://www.encodeproject.org/files/ENCFF605EQP/@@download/ENCFF605EQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF471LWP bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF714CGS, ENCFF735MSB 4277208 ENCODE Processing Pipeline be30efd686095c04a976f102185928c0 https://www.encodeproject.org/files/ENCFF471LWP/@@download/ENCFF471LWP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF579CKS bigBed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF605EQP 8480591 ENCODE Processing Pipeline a8c16ad93f65b4fb47a2bc604fc0206b https://www.encodeproject.org/files/ENCFF579CKS/@@download/ENCFF579CKS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF462VGX bigWig signal p-value ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF714CGS, ENCFF735MSB 549419574 ENCODE Processing Pipeline 438c6bac3830288b70ed31978af05bf9 https://www.encodeproject.org/files/ENCFF462VGX/@@download/ENCFF462VGX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF514HNS bed narrowPeak conservative idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF145RHD, ENCFF471LWP, ENCFF605EQP 80872 ENCODE Processing Pipeline 562b59f701ff780063e12100d87b09a8 https://www.encodeproject.org/files/ENCFF514HNS/@@download/ENCFF514HNS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF966OGG bigBed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF471LWP 11040777 ENCODE Processing Pipeline 1342db1791744003a2ddb63ebdc76a40 https://www.encodeproject.org/files/ENCFF966OGG/@@download/ENCFF966OGG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF542MPK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF514HNS 169825 ENCODE Processing Pipeline 26c90384d93d3e628cf96335c701ddbc https://www.encodeproject.org/files/ENCFF542MPK/@@download/ENCFF542MPK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF077XRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF725LDD 235693 ENCODE Processing Pipeline 7974bec1efe06cbae60c805077144926 https://www.encodeproject.org/files/ENCFF077XRR/@@download/ENCFF077XRR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF327VSQ bam unfiltered alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEA, ENCFF807MUK 1046783933 ENCODE Processing Pipeline ee24fdd5217c76c6d7e8c1d54552f482 https://www.encodeproject.org/files/ENCFF327VSQ/@@download/ENCFF327VSQ.bam hg19 released low read length, low read depth ENCFF103CZS bam unfiltered alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEF, ENCFF807MUK 883856178 ENCODE Processing Pipeline 7497a2b5df30cbb2086b20138cc91b0e https://www.encodeproject.org/files/ENCFF103CZS/@@download/ENCFF103CZS.bam hg19 released low read length, low read depth ENCFF290SAN bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 466336089 ENCODE Processing Pipeline 5512ea5d6b6e4a37a616603af2ff1223 https://www.encodeproject.org/files/ENCFF290SAN/@@download/ENCFF290SAN.bigWig hg19 released low read length, low read depth ENCFF840IEI bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 432336585 ENCODE Processing Pipeline 8a1f7070ad814a2e74f9c0861e287a39 https://www.encodeproject.org/files/ENCFF840IEI/@@download/ENCFF840IEI.bigWig hg19 released low read length, low read depth ENCFF558TFD bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 4090890 ENCODE Processing Pipeline d725778059cebd7da466c1f2021370c8 https://www.encodeproject.org/files/ENCFF558TFD/@@download/ENCFF558TFD.bed.gz hg19 released low read length, low read depth ENCFF381HBX bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 4173252 ENCODE Processing Pipeline ce09c9ade44c240c9999ad04a2f8b0da https://www.encodeproject.org/files/ENCFF381HBX/@@download/ENCFF381HBX.bed.gz hg19 released low read length, low read depth ENCFF186LIR bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LGR, ENCFF313JJC, ENCFF817NEK, ENCFF863VMN 5298009 ENCODE Processing Pipeline 4caa7fb9a43c39a95a60eaf25558c9c7 https://www.encodeproject.org/files/ENCFF186LIR/@@download/ENCFF186LIR.bed.gz hg19 released low read length, low read depth ENCFF357WMV bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF558TFD 10630192 ENCODE Processing Pipeline 25789c41a0c8d16751258d03fb296c1b https://www.encodeproject.org/files/ENCFF357WMV/@@download/ENCFF357WMV.bigBed hg19 released low read length, low read depth ENCFF623HXG bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF186LIR 11397234 ENCODE Processing Pipeline 7b1ea902bf1cccac4693de7d984e5ee7 https://www.encodeproject.org/files/ENCFF623HXG/@@download/ENCFF623HXG.bigBed hg19 released low read length, low read depth ENCFF991YWW bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF381HBX 10584957 ENCODE Processing Pipeline ff4fdd3bd0c9d615b33e4cd8852cf0be https://www.encodeproject.org/files/ENCFF991YWW/@@download/ENCFF991YWW.bigBed hg19 released low read length, low read depth ENCFF443FGW bigBed narrowPeak conservative idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF602ZTI 101985 ENCODE Processing Pipeline 7ad3f7309d4610e86212ddea47f7c82a https://www.encodeproject.org/files/ENCFF443FGW/@@download/ENCFF443FGW.bigBed hg19 released low read length, low read depth ENCFF086LMU bed narrowPeak optimal idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF186LIR, ENCFF381HBX, ENCFF558TFD 37524 ENCODE Processing Pipeline 749996d8fe43925ce133918d367e2c7b https://www.encodeproject.org/files/ENCFF086LMU/@@download/ENCFF086LMU.bed.gz hg19 released low read length, low read depth ENCFF713VQR bigBed narrowPeak optimal idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF086LMU 110129 ENCODE Processing Pipeline 1d16088c4ba7c5ffb06d45d4897106bb https://www.encodeproject.org/files/ENCFF713VQR/@@download/ENCFF713VQR.bigBed hg19 released low read length, low read depth ENCFF602ZTI bed narrowPeak conservative idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF186LIR, ENCFF381HBX, ENCFF558TFD 31534 ENCODE Processing Pipeline dd24a22c4210a0bfc6f8bffcae350b55 https://www.encodeproject.org/files/ENCFF602ZTI/@@download/ENCFF602ZTI.bed.gz hg19 released low read length, low read depth ENCFF002EEA fastq reads ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 718809356 Michael Snyder, Stanford 4ce4ad60ea24fbf4dd98bb90a963172a SRA:SRR5112059 https://www.encodeproject.org/files/ENCFF002EEA/@@download/ENCFF002EEA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, low read depth ENCFF002EEF fastq reads ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 603297436 Michael Snyder, Stanford 6e14014ca68d29aa603234c0f42d3202 SRA:SRR5112060 https://www.encodeproject.org/files/ENCFF002EEF/@@download/ENCFF002EEF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, low read depth ENCFF051LGR bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEF, ENCFF807MUK 633038741 ENCODE Processing Pipeline dff0f81cdc41b536b232db8e327ece8a https://www.encodeproject.org/files/ENCFF051LGR/@@download/ENCFF051LGR.bam hg19 released low read length, low read depth ENCFF313JJC bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEA, ENCFF807MUK 746449740 ENCODE Processing Pipeline c74a9d76ff211b8a04526e39d14c3df2 https://www.encodeproject.org/files/ENCFF313JJC/@@download/ENCFF313JJC.bam hg19 released low read length, low read depth ENCFF846NSX bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 461851095 ENCODE Processing Pipeline 30840d16aa3336bed0a16132b1f6c9e6 https://www.encodeproject.org/files/ENCFF846NSX/@@download/ENCFF846NSX.bigWig hg19 archived low read length, low read depth ENCFF215DFZ bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 583781332 ENCODE Processing Pipeline 3d2e1a7804d526285b0ffd50e5c09517 https://www.encodeproject.org/files/ENCFF215DFZ/@@download/ENCFF215DFZ.bigWig hg19 released low read length, low read depth ENCFF570TKY bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LGR, ENCFF313JJC, ENCFF817NEK, ENCFF863VMN 952440563 ENCODE Processing Pipeline 4c7b548e53a027a5667295fd9a9f81e4 https://www.encodeproject.org/files/ENCFF570TKY/@@download/ENCFF570TKY.bigWig hg19 released low read length, low read depth ENCFF538LOQ bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 423464547 ENCODE Processing Pipeline ab9f7d694d174d3b19ade1bedcd6ac44 https://www.encodeproject.org/files/ENCFF538LOQ/@@download/ENCFF538LOQ.bigWig hg19 archived low read length, low read depth ENCFF714AII bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 372608327 ENCODE Processing Pipeline 6cab02177605d84e6016eeb85af41eff https://www.encodeproject.org/files/ENCFF714AII/@@download/ENCFF714AII.bigWig hg19 released low read length, low read depth ENCFF406ZOC bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LGR, ENCFF313JJC, ENCFF817NEK, ENCFF863VMN 912387351 ENCODE Processing Pipeline ca3cb2c29e429d9bf93535eeba0675e4 https://www.encodeproject.org/files/ENCFF406ZOC/@@download/ENCFF406ZOC.bigWig hg19 released low read length, low read depth ENCFF098TYI bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 4266140 ENCODE Processing Pipeline b2fe26d3fe2678b2d781d8c4e9690968 https://www.encodeproject.org/files/ENCFF098TYI/@@download/ENCFF098TYI.bed.gz hg19 archived low read length, low read depth ENCFF198VHZ bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 4377234 ENCODE Processing Pipeline 26a8b20b0e388c2e0b8de7695c1ac868 https://www.encodeproject.org/files/ENCFF198VHZ/@@download/ENCFF198VHZ.bed.gz hg19 archived low read length, low read depth ENCFF514KJW bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LGR, ENCFF313JJC, ENCFF817NEK, ENCFF863VMN 5531831 ENCODE Processing Pipeline fcd766444111fc61273fd7ba7de1f6ee https://www.encodeproject.org/files/ENCFF514KJW/@@download/ENCFF514KJW.bed.gz hg19 archived low read length, low read depth ENCFF428IUB bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF198VHZ 10835296 ENCODE Processing Pipeline 3ad0c3f8be6673fb57390f820269dba5 https://www.encodeproject.org/files/ENCFF428IUB/@@download/ENCFF428IUB.bigBed hg19 archived low read length, low read depth ENCFF593QOB bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF098TYI 10871009 ENCODE Processing Pipeline a860cd6de6c15579f9ed5917342fe2ee https://www.encodeproject.org/files/ENCFF593QOB/@@download/ENCFF593QOB.bigBed hg19 archived low read length, low read depth ENCFF608ZQE bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF514KJW 11457440 ENCODE Processing Pipeline e5f62e9d8adb97e357511a91dbe88eb4 https://www.encodeproject.org/files/ENCFF608ZQE/@@download/ENCFF608ZQE.bigBed hg19 archived low read length, low read depth ENCFF894TPH bam unfiltered alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEF, ENCFF643CGH 888262302 ENCODE Processing Pipeline 4aa4793eca18769a9bfc36b57944bfe0 https://www.encodeproject.org/files/ENCFF894TPH/@@download/ENCFF894TPH.bam GRCh38 released low read length, low read depth ENCFF373AWX bam unfiltered alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEA, ENCFF643CGH 1052217017 ENCODE Processing Pipeline 541ee5d0a64e4b2d8eb0a739173c4fdd https://www.encodeproject.org/files/ENCFF373AWX/@@download/ENCFF373AWX.bam GRCh38 released low read length, low read depth ENCFF598KSY bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEA, ENCFF643CGH 746170462 ENCODE Processing Pipeline 4fd9946c5f3643e026995fd12e54b5d6 https://www.encodeproject.org/files/ENCFF598KSY/@@download/ENCFF598KSY.bam GRCh38 released low read length, low read depth ENCFF136LXS bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEF, ENCFF643CGH 632790233 ENCODE Processing Pipeline 15aeb14653ccb2007b96964c98fdadbd https://www.encodeproject.org/files/ENCFF136LXS/@@download/ENCFF136LXS.bam GRCh38 released low read length, low read depth ENCFF005TFZ bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF598KSY 503902299 ENCODE Processing Pipeline f406fc4c606cc616be6663f5a37e72b3 https://www.encodeproject.org/files/ENCFF005TFZ/@@download/ENCFF005TFZ.bigWig GRCh38 released low read length, low read depth ENCFF445VRM bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF136LXS, ENCFF536CTV 484548983 ENCODE Processing Pipeline 1f1523a4ab1504c6b22a9cdb37079505 https://www.encodeproject.org/files/ENCFF445VRM/@@download/ENCFF445VRM.bigWig GRCh38 released low read length, low read depth ENCFF919POK bigWig signal p-value ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136LXS, ENCFF511RLN, ENCFF536CTV, ENCFF598KSY 951412907 ENCODE Processing Pipeline 826f11bb8b2f51208445552ea194b8bc https://www.encodeproject.org/files/ENCFF919POK/@@download/ENCFF919POK.bigWig GRCh38 released low read length, low read depth ENCFF822NEC bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF598KSY 431168038 ENCODE Processing Pipeline e53f164f8c82e188fdc56131c6f9ec6d https://www.encodeproject.org/files/ENCFF822NEC/@@download/ENCFF822NEC.bigWig GRCh38 released low read length, low read depth ENCFF790TMR bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF136LXS, ENCFF536CTV 372654781 ENCODE Processing Pipeline 9927a1e8f1eb6957791003003abdb00e https://www.encodeproject.org/files/ENCFF790TMR/@@download/ENCFF790TMR.bigWig GRCh38 released low read length, low read depth ENCFF673YNA bigWig fold change over control ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136LXS, ENCFF511RLN, ENCFF536CTV, ENCFF598KSY 911767928 ENCODE Processing Pipeline d1ac5794afc34625f89fd2a059eba457 https://www.encodeproject.org/files/ENCFF673YNA/@@download/ENCFF673YNA.bigWig GRCh38 released low read length, low read depth ENCFF136TSG bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF598KSY 4039224 ENCODE Processing Pipeline 5797809f929961c36992f45a7a57f2a2 https://www.encodeproject.org/files/ENCFF136TSG/@@download/ENCFF136TSG.bed.gz GRCh38 released low read length, low read depth ENCFF755KQB bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF136LXS, ENCFF536CTV 4173397 ENCODE Processing Pipeline 10d107ff1f910a4d56601fa000747ba0 https://www.encodeproject.org/files/ENCFF755KQB/@@download/ENCFF755KQB.bed.gz GRCh38 released low read length, low read depth ENCFF341BGH bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136LXS, ENCFF511RLN, ENCFF536CTV, ENCFF598KSY 5302933 ENCODE Processing Pipeline d016f765f096bd7f6c698f7345dfbf43 https://www.encodeproject.org/files/ENCFF341BGH/@@download/ENCFF341BGH.bed.gz GRCh38 released low read length, low read depth ENCFF479TFG bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF755KQB 10592401 ENCODE Processing Pipeline e28764ebb7d2889d461ef772095225b9 https://www.encodeproject.org/files/ENCFF479TFG/@@download/ENCFF479TFG.bigBed GRCh38 released low read length, low read depth ENCFF419JTH bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF136TSG 10560200 ENCODE Processing Pipeline 27b90e194b084986dcf11c2f95b7dbdc https://www.encodeproject.org/files/ENCFF419JTH/@@download/ENCFF419JTH.bigBed GRCh38 released low read length, low read depth ENCFF239LRW bed narrowPeak optimal idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136TSG, ENCFF341BGH, ENCFF419RSJ, ENCFF755KQB 40568 ENCODE Processing Pipeline f36afa109b3ace753b5df4f1ca484cc8 https://www.encodeproject.org/files/ENCFF239LRW/@@download/ENCFF239LRW.bed.gz GRCh38 released low read length, low read depth ENCFF149OZN bigBed narrowPeak conservative idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF393PTD 105341 ENCODE Processing Pipeline 456f8e6d69cd95859d0fcf78c502d9a2 https://www.encodeproject.org/files/ENCFF149OZN/@@download/ENCFF149OZN.bigBed GRCh38 released low read length, low read depth ENCFF981KVV bigBed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF341BGH 11407892 ENCODE Processing Pipeline 9539a36931d4d4e6d0b5a4e1a7403d9f https://www.encodeproject.org/files/ENCFF981KVV/@@download/ENCFF981KVV.bigBed GRCh38 released low read length, low read depth ENCFF393PTD bed narrowPeak conservative idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136TSG, ENCFF341BGH, ENCFF419RSJ, ENCFF755KQB 33539 ENCODE Processing Pipeline 18b747c69e813bf27fb4b7173155cc62 https://www.encodeproject.org/files/ENCFF393PTD/@@download/ENCFF393PTD.bed.gz GRCh38 released low read length, low read depth ENCFF145RIM bigBed narrowPeak optimal idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF239LRW 138445 ENCODE Processing Pipeline 5ad5d117d1649b778b68346382bbb792 https://www.encodeproject.org/files/ENCFF145RIM/@@download/ENCFF145RIM.bigBed GRCh38 released low read length, low read depth ENCFF716WMS bigBed narrowPeak conservative idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF111RAM 99697 ENCODE Processing Pipeline 1b61e3c7531442dbea36046183b7ce0c https://www.encodeproject.org/files/ENCFF716WMS/@@download/ENCFF716WMS.bigBed hg19 archived low read length, low read depth ENCFF473GYY bed narrowPeak optimal idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF098TYI, ENCFF198VHZ, ENCFF514KJW 35910 ENCODE Processing Pipeline f030589351c1aeb6a6cfa232f7e10259 https://www.encodeproject.org/files/ENCFF473GYY/@@download/ENCFF473GYY.bed.gz hg19 archived low read length, low read depth ENCFF111RAM bed narrowPeak conservative idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF098TYI, ENCFF198VHZ, ENCFF514KJW 29920 ENCODE Processing Pipeline bbaefe12d206b603c762e5b894ff13d1 https://www.encodeproject.org/files/ENCFF111RAM/@@download/ENCFF111RAM.bed.gz hg19 archived low read length, low read depth ENCFF536PVH bigBed narrowPeak optimal idr thresholded peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF473GYY 107827 ENCODE Processing Pipeline 5cce9eda42bab53a6edf288ae33adba5 https://www.encodeproject.org/files/ENCFF536PVH/@@download/ENCFF536PVH.bigBed hg19 archived low read length, low read depth ENCFF398MUP bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF807MUK 1435766476 ENCODE Processing Pipeline a4ad57c1ae47331c0fd4b6a3d6e0c232 https://www.encodeproject.org/files/ENCFF398MUP/@@download/ENCFF398MUP.bam hg19 released low read depth, antibody characterized with exemption ENCFF219DUV bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF807MUK 1660693832 ENCODE Processing Pipeline f8a168354c096c987b8d4fdc9c616bdb https://www.encodeproject.org/files/ENCFF219DUV/@@download/ENCFF219DUV.bam hg19 released low read depth, antibody characterized with exemption ENCFF324QQE fastq reads ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1368984243 Richard Myers, HAIB 59792415893ff8582b26bb5c000f213e SRA:SRR5331417 https://www.encodeproject.org/files/ENCFF324QQE/@@download/ENCFF324QQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF598SBH/ released low read depth, antibody characterized with exemption ENCFF188ZWJ fastq reads ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1579236809 Richard Myers, HAIB 25572ee0d8eaf426b361d167a316eedd SRA:SRR5331416 https://www.encodeproject.org/files/ENCFF188ZWJ/@@download/ENCFF188ZWJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF381XXA/ released low read depth, antibody characterized with exemption ENCFF262KHM bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF807MUK 1033909070 ENCODE Processing Pipeline e03bd99038584a1d067d42071b11741d https://www.encodeproject.org/files/ENCFF262KHM/@@download/ENCFF262KHM.bam hg19 released low read depth, antibody characterized with exemption ENCFF437VCI bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF807MUK 1203001510 ENCODE Processing Pipeline 444dad331cc493aa1a3a0e1a0f91737c https://www.encodeproject.org/files/ENCFF437VCI/@@download/ENCFF437VCI.bam hg19 released low read depth, antibody characterized with exemption ENCFF592UEL bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 670826993 ENCODE Processing Pipeline 2366b2f7185baf6efe170fd672a40d7f https://www.encodeproject.org/files/ENCFF592UEL/@@download/ENCFF592UEL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF254LCG bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF262KHM, ENCFF313NWV, ENCFF437VCI, ENCFF935ZWS 6925793 ENCODE Processing Pipeline 343b8c3847fd115c7e315e73b8dc2201 https://www.encodeproject.org/files/ENCFF254LCG/@@download/ENCFF254LCG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF122XQS bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF262KHM, ENCFF313NWV, ENCFF437VCI, ENCFF935ZWS 1200944935 ENCODE Processing Pipeline 00492247b014270ea333d3eeffdf5ce6 https://www.encodeproject.org/files/ENCFF122XQS/@@download/ENCFF122XQS.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF281NZH bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 592925890 ENCODE Processing Pipeline 031b9f36ad67aca4863d88ee53be4d0a https://www.encodeproject.org/files/ENCFF281NZH/@@download/ENCFF281NZH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF561DWH bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 553671488 ENCODE Processing Pipeline 5a7b841af5e122598bafcd67d77a1021 https://www.encodeproject.org/files/ENCFF561DWH/@@download/ENCFF561DWH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF382LFK bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF050FWJ 12723242 ENCODE Processing Pipeline 9a621834d07a78058f4a2ee484e91e91 https://www.encodeproject.org/files/ENCFF382LFK/@@download/ENCFF382LFK.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF021JVO bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 509959307 ENCODE Processing Pipeline 14fde8f2b7f032a1d95e04a05cb99f2c https://www.encodeproject.org/files/ENCFF021JVO/@@download/ENCFF021JVO.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF758PJS bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF262KHM, ENCFF313NWV, ENCFF437VCI, ENCFF935ZWS 1183468014 ENCODE Processing Pipeline 59d04092d4348d357b5058546285149d https://www.encodeproject.org/files/ENCFF758PJS/@@download/ENCFF758PJS.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF327ANX bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 6627642 ENCODE Processing Pipeline 8c9308a316f7f6ca9e4a33067b11c5d4 https://www.encodeproject.org/files/ENCFF327ANX/@@download/ENCFF327ANX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF050FWJ bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 6409186 ENCODE Processing Pipeline d3f612216c91518b7a870c5b288a9ed3 https://www.encodeproject.org/files/ENCFF050FWJ/@@download/ENCFF050FWJ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF687JGN bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF254LCG 12707723 ENCODE Processing Pipeline 887aeed2ef07017fc92a73da83b87b8e https://www.encodeproject.org/files/ENCFF687JGN/@@download/ENCFF687JGN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF348IKJ bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF327ANX 12890934 ENCODE Processing Pipeline be0ee6d377e54c77aad416f8e36c5d91 https://www.encodeproject.org/files/ENCFF348IKJ/@@download/ENCFF348IKJ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF483IJC bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF643CGH 1438216426 ENCODE Processing Pipeline 4544d9a5952fcad26cb161dba2b806eb https://www.encodeproject.org/files/ENCFF483IJC/@@download/ENCFF483IJC.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF032UFJ bam unfiltered alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF643CGH 1663220697 ENCODE Processing Pipeline 94e465d07f76eb0fb87744c3cf130a98 https://www.encodeproject.org/files/ENCFF032UFJ/@@download/ENCFF032UFJ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF632KTY bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF643CGH 1039319879 ENCODE Processing Pipeline 8ba08834748a981866d8fd1b389e2ed0 https://www.encodeproject.org/files/ENCFF632KTY/@@download/ENCFF632KTY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF408KYB bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF643CGH 1210215277 ENCODE Processing Pipeline c8ed829dcadde3725535e6c19657feb4 https://www.encodeproject.org/files/ENCFF408KYB/@@download/ENCFF408KYB.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF655QWY bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF408KYB, ENCFF940GKZ 650399752 ENCODE Processing Pipeline b4a9578bb2fb8398a13a7cc77374c0fd https://www.encodeproject.org/files/ENCFF655QWY/@@download/ENCFF655QWY.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF292EDC bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF409OXD, ENCFF632KTY 612569184 ENCODE Processing Pipeline cce07ac86f74c533c7d8417d452a4758 https://www.encodeproject.org/files/ENCFF292EDC/@@download/ENCFF292EDC.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF526JAB bigWig signal p-value ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF408KYB, ENCFF409OXD, ENCFF632KTY, ENCFF940GKZ 1198924408 ENCODE Processing Pipeline 0a9cf2686adc9abe7938c15b685b495c https://www.encodeproject.org/files/ENCFF526JAB/@@download/ENCFF526JAB.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF764GUD bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF408KYB, ENCFF940GKZ 559705424 ENCODE Processing Pipeline f3bf61622f75e509169c2829dfdbe090 https://www.encodeproject.org/files/ENCFF764GUD/@@download/ENCFF764GUD.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF478ISK bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF409OXD, ENCFF632KTY 509506344 ENCODE Processing Pipeline a5fd0c55d180c186f9c5b9270eb11eb5 https://www.encodeproject.org/files/ENCFF478ISK/@@download/ENCFF478ISK.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF713ZGU bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF408KYB, ENCFF940GKZ 6588530 ENCODE Processing Pipeline b27185cb8bc47dada2d68de6e0d3dba9 https://www.encodeproject.org/files/ENCFF713ZGU/@@download/ENCFF713ZGU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF699ETX bigWig fold change over control ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF408KYB, ENCFF409OXD, ENCFF632KTY, ENCFF940GKZ 1176082338 ENCODE Processing Pipeline 446afd2a91e683d78aece20aef8e7ce2 https://www.encodeproject.org/files/ENCFF699ETX/@@download/ENCFF699ETX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF221YFP bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF713ZGU 13012775 ENCODE Processing Pipeline 8f35d280732151360b1c3daa6b1d3c15 https://www.encodeproject.org/files/ENCFF221YFP/@@download/ENCFF221YFP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF004DIE bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF409OXD, ENCFF632KTY 6366300 ENCODE Processing Pipeline 2ad5422fa09d5e3bf068dca3f2b55b4a https://www.encodeproject.org/files/ENCFF004DIE/@@download/ENCFF004DIE.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF279XTW bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF408KYB, ENCFF409OXD, ENCFF632KTY, ENCFF940GKZ 7006492 ENCODE Processing Pipeline 5c548a85e832864a1a7ab399ba553db1 https://www.encodeproject.org/files/ENCFF279XTW/@@download/ENCFF279XTW.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF797ETP bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF004DIE 12839326 ENCODE Processing Pipeline 017cb956b981b0aceb82eac3dae44f68 https://www.encodeproject.org/files/ENCFF797ETP/@@download/ENCFF797ETP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF041QPS bed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF004DIE, ENCFF279XTW, ENCFF419RSJ, ENCFF713ZGU 614257 ENCODE Processing Pipeline 0f7f2866fd405d5172f47aba70a37460 https://www.encodeproject.org/files/ENCFF041QPS/@@download/ENCFF041QPS.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF838EFI bigBed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF041QPS 1150876 ENCODE Processing Pipeline 31dc462bdc5345be5200afed9b437068 https://www.encodeproject.org/files/ENCFF838EFI/@@download/ENCFF838EFI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF311PMS bigBed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF279XTW 12850995 ENCODE Processing Pipeline 5398a9b5bdb3207a222ba5b3f868338b https://www.encodeproject.org/files/ENCFF311PMS/@@download/ENCFF311PMS.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF023ALY bed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF004DIE, ENCFF279XTW, ENCFF419RSJ, ENCFF713ZGU 663372 ENCODE Processing Pipeline 134887a21367574f6941b653ad5a6301 https://www.encodeproject.org/files/ENCFF023ALY/@@download/ENCFF023ALY.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF239KVL bigBed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF023ALY 1220598 ENCODE Processing Pipeline f8f79893a38cfe21f666f83eb5e34de4 https://www.encodeproject.org/files/ENCFF239KVL/@@download/ENCFF239KVL.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF393KDR bed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF050FWJ, ENCFF254LCG, ENCFF327ANX 557790 ENCODE Processing Pipeline 47c0e8c63a412e4f81edf836f9099541 https://www.encodeproject.org/files/ENCFF393KDR/@@download/ENCFF393KDR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF841AWG bigBed narrowPeak conservative idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF393KDR 1077028 ENCODE Processing Pipeline 6aaf05056c1fa2173c9228ba25922412 https://www.encodeproject.org/files/ENCFF841AWG/@@download/ENCFF841AWG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF242VUO bed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF050FWJ, ENCFF254LCG, ENCFF327ANX 592515 ENCODE Processing Pipeline ffafc1a8641763eab50f8a610d2a523f https://www.encodeproject.org/files/ENCFF242VUO/@@download/ENCFF242VUO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF191FEN bigBed narrowPeak optimal idr thresholded peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF242VUO 1125429 ENCODE Processing Pipeline c4847c04244f4feddda4609feb54669b https://www.encodeproject.org/files/ENCFF191FEN/@@download/ENCFF191FEN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF000XWK bam alignments ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XWT 83822666 Sherman Weissman, Yale 6246b73cfc265ef307969c4bb47580b5 https://www.encodeproject.org/files/ENCFF000XWK/@@download/ENCFF000XWK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWL bigBed narrowPeak peaks ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKU 243652 Sherman Weissman, Yale 2ce5039a523891858f8081e1a0464c20 https://www.encodeproject.org/files/ENCFF000XWL/@@download/ENCFF000XWL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWM bam alignments ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XWW 151857179 Sherman Weissman, Yale 3c167e6efd76782a5f4ca43915f4f602 https://www.encodeproject.org/files/ENCFF000XWM/@@download/ENCFF000XWM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWN bigWig signal ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 309807275 Sherman Weissman, Yale 3dbf1663c8899dcaea6b4fdf34cfafa0 https://www.encodeproject.org/files/ENCFF000XWN/@@download/ENCFF000XWN.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XWO bam alignments ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XWV 213225436 Sherman Weissman, Yale 47ddd5e1cde6222ed772bc1eeb7a2768 https://www.encodeproject.org/files/ENCFF000XWO/@@download/ENCFF000XWO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWT fastq reads ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 64666040 Sherman Weissman, Yale ca5b04b6dac6d30cd57f88a52f6b3455 https://www.encodeproject.org/files/ENCFF000XWT/@@download/ENCFF000XWT.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XWV fastq reads ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 170191769 Sherman Weissman, Yale 6758e6cb0a9eac452c17a363f750d749 https://www.encodeproject.org/files/ENCFF000XWV/@@download/ENCFF000XWV.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XWW fastq reads ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 115917555 Sherman Weissman, Yale d362350be83c7d9713161f5a6954a151 https://www.encodeproject.org/files/ENCFF000XWW/@@download/ENCFF000XWW.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VKU bed narrowPeak peaks ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 81778 Sherman Weissman, Yale 972c5ce2f823b520d52b1ae57310108d https://www.encodeproject.org/files/ENCFF001VKU/@@download/ENCFF001VKU.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF975YUE bam unfiltered alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 36 ENCFF002EVN, ENCFF807MUK 1021912491 ENCODE Processing Pipeline 0acfcf16a688a8d9dfb2cd14ddb63d11 https://www.encodeproject.org/files/ENCFF975YUE/@@download/ENCFF975YUE.bam hg19 released low read length, low read depth ENCFF859XRL bam unfiltered alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 36 ENCFF002EVQ, ENCFF807MUK 1266229322 ENCODE Processing Pipeline dcdd23d268ed4700c86057936f797ee1 https://www.encodeproject.org/files/ENCFF859XRL/@@download/ENCFF859XRL.bam hg19 released low read length, low read depth ENCFF002EVN fastq reads ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 1 36 single-ended 825829810 Michael Snyder, Stanford 0e8530af270d196404a639e5ca1c500d SRA:SRR5112053 https://www.encodeproject.org/files/ENCFF002EVN/@@download/ENCFF002EVN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECN/ released low read length, low read depth ENCFF002EVQ fastq reads ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 1 36 single-ended 1023759967 Michael Snyder, Stanford 3d0cb6397db2673ab4e4efff25d3fbce SRA:SRR5112054 https://www.encodeproject.org/files/ENCFF002EVQ/@@download/ENCFF002EVQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECO/ released low read length, low read depth ENCFF424VMX bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 36 ENCFF002EVQ, ENCFF807MUK 885256915 ENCODE Processing Pipeline 1e5ec1a996dc81bf8823bfae8920507c https://www.encodeproject.org/files/ENCFF424VMX/@@download/ENCFF424VMX.bam hg19 released low read length, low read depth ENCFF451LLN bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 36 ENCFF002EVN, ENCFF807MUK 712308081 ENCODE Processing Pipeline b9b8faa619043959c5f3e555f8178370 https://www.encodeproject.org/files/ENCFF451LLN/@@download/ENCFF451LLN.bam hg19 released low read length, low read depth ENCFF092BAP bigWig signal p-value ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF424VMX, ENCFF939XHK 487383874 ENCODE Processing Pipeline 036e7aeab27854f1a042ccbc903fc42c https://www.encodeproject.org/files/ENCFF092BAP/@@download/ENCFF092BAP.bigWig hg19 released low read length, low read depth ENCFF069CMP bigWig signal p-value ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF316UXC, ENCFF424VMX, ENCFF451LLN, ENCFF939XHK 1061637607 ENCODE Processing Pipeline a1cc02c28efe61aa4ec630c5aa4fdf3f https://www.encodeproject.org/files/ENCFF069CMP/@@download/ENCFF069CMP.bigWig hg19 released low read length, low read depth ENCFF737CTQ bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF424VMX, ENCFF939XHK 4808199 ENCODE Processing Pipeline ae1ebc83660c2e4e0a3262601ca989cd https://www.encodeproject.org/files/ENCFF737CTQ/@@download/ENCFF737CTQ.bed.gz hg19 released low read length, low read depth ENCFF269UBR bigBed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF737CTQ 11066695 ENCODE Processing Pipeline afdc2494a48e5e40f01a81ddc6c31026 https://www.encodeproject.org/files/ENCFF269UBR/@@download/ENCFF269UBR.bigBed hg19 released low read length, low read depth ENCFF370SSB bigWig fold change over control ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF316UXC, ENCFF451LLN 407239345 ENCODE Processing Pipeline d04896265068e7a29b4ab5266368792f https://www.encodeproject.org/files/ENCFF370SSB/@@download/ENCFF370SSB.bigWig hg19 released low read length, low read depth ENCFF505VKX bigBed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF249ESZ 11086140 ENCODE Processing Pipeline 3af57a9a10212805affc2d27eb2dc56c https://www.encodeproject.org/files/ENCFF505VKX/@@download/ENCFF505VKX.bigBed hg19 released low read length, low read depth ENCFF019NSZ bigWig signal p-value ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF316UXC, ENCFF451LLN 458483678 ENCODE Processing Pipeline f816d32aabca7204c0ff2883f2843741 https://www.encodeproject.org/files/ENCFF019NSZ/@@download/ENCFF019NSZ.bigWig hg19 released low read length, low read depth ENCFF516SEM bigWig fold change over control ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF424VMX, ENCFF939XHK 472343934 ENCODE Processing Pipeline 40598d48e3a928724f7e271115ea67d8 https://www.encodeproject.org/files/ENCFF516SEM/@@download/ENCFF516SEM.bigWig hg19 released low read length, low read depth ENCFF066XXF bigWig fold change over control ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF316UXC, ENCFF424VMX, ENCFF451LLN, ENCFF939XHK 978921512 ENCODE Processing Pipeline 92340388fe2aa0ae79714bd8afa0670f https://www.encodeproject.org/files/ENCFF066XXF/@@download/ENCFF066XXF.bigWig hg19 released low read length, low read depth ENCFF249ESZ bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF316UXC, ENCFF451LLN 4993141 ENCODE Processing Pipeline 36922ee71029e462331ad1f033edf569 https://www.encodeproject.org/files/ENCFF249ESZ/@@download/ENCFF249ESZ.bed.gz hg19 released low read length, low read depth ENCFF445YDK bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF316UXC, ENCFF424VMX, ENCFF451LLN, ENCFF939XHK 6285195 ENCODE Processing Pipeline e5cf6c34f0255db05a9560edccbae958 https://www.encodeproject.org/files/ENCFF445YDK/@@download/ENCFF445YDK.bed.gz hg19 released low read length, low read depth ENCFF531ENB bigBed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF445YDK 11397286 ENCODE Processing Pipeline 104464807cfc3468f7ae4f4e55af323f https://www.encodeproject.org/files/ENCFF531ENB/@@download/ENCFF531ENB.bigBed hg19 released low read length, low read depth ENCFF056UJQ bam unfiltered alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 36 ENCFF002EVQ, ENCFF643CGH 1274107569 ENCODE Processing Pipeline 24056a4e0729b0d675c889ab80c22006 https://www.encodeproject.org/files/ENCFF056UJQ/@@download/ENCFF056UJQ.bam GRCh38 released low read length, low read depth ENCFF752BNX bam unfiltered alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 36 ENCFF002EVN, ENCFF643CGH 1028028080 ENCODE Processing Pipeline 79e82ad0b9f0301f61cf866f2f6cc860 https://www.encodeproject.org/files/ENCFF752BNX/@@download/ENCFF752BNX.bam GRCh38 released low read length, low read depth ENCFF068LXE bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 36 ENCFF002EVQ, ENCFF643CGH 884892331 ENCODE Processing Pipeline 010d28e82a39a102328af8147fdd7df9 https://www.encodeproject.org/files/ENCFF068LXE/@@download/ENCFF068LXE.bam GRCh38 released low read length, low read depth ENCFF686TXK bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 36 ENCFF002EVN, ENCFF643CGH 711882772 ENCODE Processing Pipeline b408176e9f58fd0c572362d7c7217ee9 https://www.encodeproject.org/files/ENCFF686TXK/@@download/ENCFF686TXK.bam GRCh38 released low read length, low read depth ENCFF229RXV bigWig signal p-value ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF459QXO, ENCFF686TXK 597835270 ENCODE Processing Pipeline a52a790d3cb3563287b1c0700468197e https://www.encodeproject.org/files/ENCFF229RXV/@@download/ENCFF229RXV.bigWig GRCh38 released low read length, low read depth ENCFF707QJJ bigWig signal p-value ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF068LXE, ENCFF714ZPY 486837448 ENCODE Processing Pipeline b148a365c15834ec365098b20078fe81 https://www.encodeproject.org/files/ENCFF707QJJ/@@download/ENCFF707QJJ.bigWig GRCh38 released low read length, low read depth ENCFF678XHN bigWig signal p-value ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF068LXE, ENCFF459QXO, ENCFF686TXK, ENCFF714ZPY 909147571 ENCODE Processing Pipeline 41f67bb3aaddc2d7024b176b9bbf8090 https://www.encodeproject.org/files/ENCFF678XHN/@@download/ENCFF678XHN.bigWig GRCh38 released low read length, low read depth ENCFF452TFY bigWig fold change over control ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF459QXO, ENCFF686TXK 405345277 ENCODE Processing Pipeline b1650731d2e18a93152ec816a6b1e83a https://www.encodeproject.org/files/ENCFF452TFY/@@download/ENCFF452TFY.bigWig GRCh38 released low read length, low read depth ENCFF483YIP bigWig fold change over control ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF068LXE, ENCFF714ZPY 471344570 ENCODE Processing Pipeline b42c506623d979ae7009245e9b594d62 https://www.encodeproject.org/files/ENCFF483YIP/@@download/ENCFF483YIP.bigWig GRCh38 released low read length, low read depth ENCFF870YFB bigWig fold change over control ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF068LXE, ENCFF459QXO, ENCFF686TXK, ENCFF714ZPY 981626806 ENCODE Processing Pipeline 1554cc319983c3cf22ec73c32271c7e5 https://www.encodeproject.org/files/ENCFF870YFB/@@download/ENCFF870YFB.bigWig GRCh38 released low read length, low read depth ENCFF315ZHU bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF459QXO, ENCFF686TXK 4757964 ENCODE Processing Pipeline 3bc89420a8870622c37628a155c875dd https://www.encodeproject.org/files/ENCFF315ZHU/@@download/ENCFF315ZHU.bed.gz GRCh38 released low read length, low read depth ENCFF251RLC bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF068LXE, ENCFF714ZPY 4487120 ENCODE Processing Pipeline 0a2d9772b8ec24c132e68e7f31de1590 https://www.encodeproject.org/files/ENCFF251RLC/@@download/ENCFF251RLC.bed.gz GRCh38 released low read length, low read depth ENCFF606SHP bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF068LXE, ENCFF459QXO, ENCFF686TXK, ENCFF714ZPY 6057824 ENCODE Processing Pipeline a9b5033c5eecc36626ee528ba500ea04 https://www.encodeproject.org/files/ENCFF606SHP/@@download/ENCFF606SHP.bed.gz GRCh38 released low read length, low read depth ENCFF754TOY bigBed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF315ZHU 10952525 ENCODE Processing Pipeline 52339a944977508e9b3c35ae2baf6cfa https://www.encodeproject.org/files/ENCFF754TOY/@@download/ENCFF754TOY.bigBed GRCh38 released low read length, low read depth ENCFF146TLX bigBed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF251RLC 10817376 ENCODE Processing Pipeline 7e606994919062f7792214a7259c35dd https://www.encodeproject.org/files/ENCFF146TLX/@@download/ENCFF146TLX.bigBed GRCh38 released low read length, low read depth ENCFF202AYV bigBed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF606SHP 11382131 ENCODE Processing Pipeline b5462db567db51ed7575fda030ed4efb https://www.encodeproject.org/files/ENCFF202AYV/@@download/ENCFF202AYV.bigBed GRCh38 released low read length, low read depth ENCFF561CJL bed narrowPeak conservative idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF251RLC, ENCFF315ZHU, ENCFF419RSJ, ENCFF606SHP 85071 ENCODE Processing Pipeline 3f16a2e0b4afc9abb73cd60eec97a65c https://www.encodeproject.org/files/ENCFF561CJL/@@download/ENCFF561CJL.bed.gz GRCh38 released low read length, low read depth ENCFF305KIK bed narrowPeak optimal idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF251RLC, ENCFF315ZHU, ENCFF419RSJ, ENCFF606SHP 153163 ENCODE Processing Pipeline 6398bf796e3f7d1cc53cc0eb5848895d https://www.encodeproject.org/files/ENCFF305KIK/@@download/ENCFF305KIK.bed.gz GRCh38 released low read length, low read depth ENCFF581HSA bigBed narrowPeak conservative idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF561CJL 204768 ENCODE Processing Pipeline a51168a9a95bb225b31a781a1b41d67a https://www.encodeproject.org/files/ENCFF581HSA/@@download/ENCFF581HSA.bigBed GRCh38 released low read length, low read depth ENCFF081PTN bigBed narrowPeak optimal idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF305KIK 299596 ENCODE Processing Pipeline ea5bbeab279d56e8171bbdd63fceb16c https://www.encodeproject.org/files/ENCFF081PTN/@@download/ENCFF081PTN.bigBed GRCh38 released low read length, low read depth ENCFF697YZY bed narrowPeak conservative idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF001TDO, ENCFF249ESZ, ENCFF445YDK, ENCFF737CTQ 77001 ENCODE Processing Pipeline bd98babdb4fad186b56b5aa9fcee56aa https://www.encodeproject.org/files/ENCFF697YZY/@@download/ENCFF697YZY.bed.gz hg19 released low read length, low read depth ENCFF481MAL bigBed narrowPeak optimal idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF712LMP 277359 ENCODE Processing Pipeline d06629a8844538247380f92de18a8744 https://www.encodeproject.org/files/ENCFF481MAL/@@download/ENCFF481MAL.bigBed hg19 released low read length, low read depth ENCFF843EXL bigBed narrowPeak conservative idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF697YZY 193516 ENCODE Processing Pipeline 896f4ad2000831fd8ec04628d557dbf9 https://www.encodeproject.org/files/ENCFF843EXL/@@download/ENCFF843EXL.bigBed hg19 released low read length, low read depth ENCFF712LMP bed narrowPeak optimal idr thresholded peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1, 2 ENCFF001TDO, ENCFF249ESZ, ENCFF445YDK, ENCFF737CTQ 138212 ENCODE Processing Pipeline 71a63bdc531b0c8197e1fc6c7d385ab9 https://www.encodeproject.org/files/ENCFF712LMP/@@download/ENCFF712LMP.bed.gz hg19 released low read length, low read depth ENCFF638SCP bam unfiltered alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF443KQR, ENCFF807MUK, ENCFF862RDJ 8060915217 ENCODE Processing Pipeline 5755c4342c6bc8b428fe64236c6ca241 https://www.encodeproject.org/files/ENCFF638SCP/@@download/ENCFF638SCP.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF674OWZ bam unfiltered alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF728MYT, ENCFF807MUK, ENCFF834FPN 7593639354 ENCODE Processing Pipeline 859ac289e306bf01280db1203940ffa2 https://www.encodeproject.org/files/ENCFF674OWZ/@@download/ENCFF674OWZ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF443KQR fastq reads ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF862RDJ 3654457774 Michael Snyder, Stanford ce54379f07dd49ce976f290459995c1e https://www.encodeproject.org/files/ENCFF443KQR/@@download/ENCFF443KQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF834FPN fastq reads ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF728MYT 3437295123 Michael Snyder, Stanford c4151de17069b3ccbe8c9b7c74f89fc5 https://www.encodeproject.org/files/ENCFF834FPN/@@download/ENCFF834FPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF728MYT fastq reads ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF834FPN 3527717639 Michael Snyder, Stanford be75024a2b6ffe7237dfad52b14ddb6c https://www.encodeproject.org/files/ENCFF728MYT/@@download/ENCFF728MYT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF862RDJ fastq reads ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF443KQR 3758953079 Michael Snyder, Stanford 9c148471dd6ada6d1e78006d1f87cd3c https://www.encodeproject.org/files/ENCFF862RDJ/@@download/ENCFF862RDJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF003ABO bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF443KQR, ENCFF807MUK, ENCFF862RDJ 6728766503 ENCODE Processing Pipeline 6b39b2c0ff2ced048947041a9fb973da https://www.encodeproject.org/files/ENCFF003ABO/@@download/ENCFF003ABO.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF794JSD bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF728MYT, ENCFF807MUK, ENCFF834FPN 6307414135 ENCODE Processing Pipeline 5c95da17a34e7c809c9c02848ba8302d https://www.encodeproject.org/files/ENCFF794JSD/@@download/ENCFF794JSD.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF974VVZ bigWig signal p-value ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF449NNE, ENCFF794JSD 1231472299 ENCODE Processing Pipeline aa8c04098f6361de5f0e64542588d9da https://www.encodeproject.org/files/ENCFF974VVZ/@@download/ENCFF974VVZ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF407SOC bigWig signal p-value ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF003ABO, ENCFF449NNE, ENCFF999EQI 1477946550 ENCODE Processing Pipeline e69ee9e96e051a21513d26810309b5b4 https://www.encodeproject.org/files/ENCFF407SOC/@@download/ENCFF407SOC.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF945YME bigWig signal p-value ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF003ABO, ENCFF449NNE, ENCFF794JSD, ENCFF999EQI 2374773425 ENCODE Processing Pipeline 8e4beec07ef952c9a228fb3466254329 https://www.encodeproject.org/files/ENCFF945YME/@@download/ENCFF945YME.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF270OVA bigWig fold change over control ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF003ABO, ENCFF449NNE, ENCFF999EQI 1855977587 ENCODE Processing Pipeline db03d2936177a89dc686f5548914ad65 https://www.encodeproject.org/files/ENCFF270OVA/@@download/ENCFF270OVA.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF365EPF bigWig fold change over control ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF449NNE, ENCFF794JSD 1442673207 ENCODE Processing Pipeline e0648245270b8e08062d8df403a02f90 https://www.encodeproject.org/files/ENCFF365EPF/@@download/ENCFF365EPF.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF663XFP bigBed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF313GGY 11394395 ENCODE Processing Pipeline 6c747e5f51da7829cc4a8a1df62bbcc3 https://www.encodeproject.org/files/ENCFF663XFP/@@download/ENCFF663XFP.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF017ZKX bigBed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF719GJP 11369293 ENCODE Processing Pipeline b950778eac779bd3b7014c2d9bb5dfc8 https://www.encodeproject.org/files/ENCFF017ZKX/@@download/ENCFF017ZKX.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF672RYT bed narrowPeak conservative idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF165DIG, ENCFF313GGY, ENCFF719GJP 18102 ENCODE Processing Pipeline 3fa1363daa49b94d7e3f005330d32334 https://www.encodeproject.org/files/ENCFF672RYT/@@download/ENCFF672RYT.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF513OEY bigWig fold change over control ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF003ABO, ENCFF449NNE, ENCFF794JSD, ENCFF999EQI 2392303067 ENCODE Processing Pipeline 6b95c70677d9bf2c23ec27de2401ab5a https://www.encodeproject.org/files/ENCFF513OEY/@@download/ENCFF513OEY.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF029OYH bigBed narrowPeak conservative idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF672RYT 80654 ENCODE Processing Pipeline 4e0d5e703a8247d187e1917bea88b8c8 https://www.encodeproject.org/files/ENCFF029OYH/@@download/ENCFF029OYH.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF313GGY bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF003ABO, ENCFF449NNE, ENCFF999EQI 6804060 ENCODE Processing Pipeline 9813556719a3b8f9ebd4afce29d0dc75 https://www.encodeproject.org/files/ENCFF313GGY/@@download/ENCFF313GGY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF719GJP bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF449NNE, ENCFF794JSD 6416388 ENCODE Processing Pipeline 5230bc97fb13b74944790369817f78e9 https://www.encodeproject.org/files/ENCFF719GJP/@@download/ENCFF719GJP.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF165DIG bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF003ABO, ENCFF449NNE, ENCFF794JSD, ENCFF999EQI 7345312 ENCODE Processing Pipeline 3cf07477d5d95963904fe6b779c305e8 https://www.encodeproject.org/files/ENCFF165DIG/@@download/ENCFF165DIG.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF327XAS bigBed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF165DIG 11529459 ENCODE Processing Pipeline fa1a540bf83e5beb9d8816c84636bff4 https://www.encodeproject.org/files/ENCFF327XAS/@@download/ENCFF327XAS.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF266KSD bed narrowPeak optimal idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF165DIG, ENCFF313GGY, ENCFF719GJP 40174 ENCODE Processing Pipeline 166fa526550204b365512e1d5ada00c2 https://www.encodeproject.org/files/ENCFF266KSD/@@download/ENCFF266KSD.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF322ZRC bigBed narrowPeak optimal idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF266KSD 114181 ENCODE Processing Pipeline ca521fb610bb6f65a7ae7a32f9bb1e60 https://www.encodeproject.org/files/ENCFF322ZRC/@@download/ENCFF322ZRC.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF909MMQ bam unfiltered alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF728MYT, ENCFF834FPN 7608870519 ENCODE Processing Pipeline 14f104ad529771198a514f67a8b89b66 https://www.encodeproject.org/files/ENCFF909MMQ/@@download/ENCFF909MMQ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF232KUK bam unfiltered alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF443KQR, ENCFF643CGH, ENCFF862RDJ 8078038480 ENCODE Processing Pipeline 30cba8b3dcb89a3e2edcf578c84791e9 https://www.encodeproject.org/files/ENCFF232KUK/@@download/ENCFF232KUK.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF990PBT bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF728MYT, ENCFF834FPN 6325934074 ENCODE Processing Pipeline 91a0cc21118c4e357679065b54a864cd https://www.encodeproject.org/files/ENCFF990PBT/@@download/ENCFF990PBT.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF898VBC bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF443KQR, ENCFF643CGH, ENCFF862RDJ 6750063180 ENCODE Processing Pipeline 22d5ccf982065dc7ee427fbec1427e97 https://www.encodeproject.org/files/ENCFF898VBC/@@download/ENCFF898VBC.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF669RVW bigWig signal p-value ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF190EPQ, ENCFF898VBC, ENCFF950AXC 1509973289 ENCODE Processing Pipeline 04d165c6c860bb6c35b4a9bc195363b8 https://www.encodeproject.org/files/ENCFF669RVW/@@download/ENCFF669RVW.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF576HUA bigWig signal p-value ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF190EPQ, ENCFF990PBT 1207048411 ENCODE Processing Pipeline 5dd0e735cd6152907c91a3899f7d79dd https://www.encodeproject.org/files/ENCFF576HUA/@@download/ENCFF576HUA.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF903JLD bigWig signal p-value ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF190EPQ, ENCFF898VBC, ENCFF950AXC, ENCFF990PBT 2375204505 ENCODE Processing Pipeline ee20b25283260cf38ad880a0761f8340 https://www.encodeproject.org/files/ENCFF903JLD/@@download/ENCFF903JLD.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF557YGG bigWig fold change over control ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF190EPQ, ENCFF898VBC, ENCFF950AXC 1844568075 ENCODE Processing Pipeline d2b455cc345bc9169d1113a89bf4eb18 https://www.encodeproject.org/files/ENCFF557YGG/@@download/ENCFF557YGG.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF496RKB bigWig fold change over control ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF190EPQ, ENCFF990PBT 1421398251 ENCODE Processing Pipeline 9799e01a9214fab26ae996e39a1ad05c https://www.encodeproject.org/files/ENCFF496RKB/@@download/ENCFF496RKB.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF368GGO bigWig fold change over control ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF190EPQ, ENCFF898VBC, ENCFF950AXC, ENCFF990PBT 2391083678 ENCODE Processing Pipeline 9ba9289c502a8d4ca8c51ebe4e165e53 https://www.encodeproject.org/files/ENCFF368GGO/@@download/ENCFF368GGO.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF245UJS bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF190EPQ, ENCFF898VBC, ENCFF950AXC 6681099 ENCODE Processing Pipeline 00c3a5643307281a7f8993dcf90fa9cd https://www.encodeproject.org/files/ENCFF245UJS/@@download/ENCFF245UJS.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF555KHK bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF190EPQ, ENCFF990PBT 6252434 ENCODE Processing Pipeline 49fc053d574a3a19871e07f02afbad13 https://www.encodeproject.org/files/ENCFF555KHK/@@download/ENCFF555KHK.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF319ZNR bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF190EPQ, ENCFF898VBC, ENCFF950AXC, ENCFF990PBT 7320942 ENCODE Processing Pipeline 983d195855c3b00fee5a59c6bd7edde8 https://www.encodeproject.org/files/ENCFF319ZNR/@@download/ENCFF319ZNR.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF957NIQ bigBed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF245UJS 11415287 ENCODE Processing Pipeline a8a61685dd673d24b936331fab810923 https://www.encodeproject.org/files/ENCFF957NIQ/@@download/ENCFF957NIQ.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF592XIC bigBed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF555KHK 11378574 ENCODE Processing Pipeline 1bb1f68e0982171f36610718553187c2 https://www.encodeproject.org/files/ENCFF592XIC/@@download/ENCFF592XIC.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF784XSI bigBed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF319ZNR 11560632 ENCODE Processing Pipeline ef18a96d655789f476ae9b5eeebc7c38 https://www.encodeproject.org/files/ENCFF784XSI/@@download/ENCFF784XSI.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF764PQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF482XNG 146162 ENCODE Processing Pipeline 377fda60bdcc7bdc7479bf79b0f403cf https://www.encodeproject.org/files/ENCFF764PQJ/@@download/ENCFF764PQJ.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF023LOS bed narrowPeak conservative idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245UJS, ENCFF319ZNR, ENCFF419RSJ, ENCFF555KHK 23077 ENCODE Processing Pipeline bca2628bab5651e66e2baac2da9c08c0 https://www.encodeproject.org/files/ENCFF023LOS/@@download/ENCFF023LOS.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF817BBH bigBed narrowPeak conservative idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF023LOS 104745 ENCODE Processing Pipeline 862739ffa7ec395e0497a9663ed569f7 https://www.encodeproject.org/files/ENCFF817BBH/@@download/ENCFF817BBH.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF482XNG bed narrowPeak optimal idr thresholded peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF245UJS, ENCFF319ZNR, ENCFF419RSJ, ENCFF555KHK 45876 ENCODE Processing Pipeline 19f42f5796fdece06ace070a4c735d17 https://www.encodeproject.org/files/ENCFF482XNG/@@download/ENCFF482XNG.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF454XVM fastq reads ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF895LBD 3654056213 Michael Snyder, Stanford bde26ddc9b65bb796653141cbc33c170 SRA:SRR6214403 https://www.encodeproject.org/files/ENCFF454XVM/@@download/ENCFF454XVM.fastq.gz Illumina HiSeq 4000 /files/ENCFF160JLB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF895LBD fastq reads ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF454XVM 3155128923 Michael Snyder, Stanford 1a0904f7e30ba37ba98e0f56a731c279 SRA:SRR6214403 https://www.encodeproject.org/files/ENCFF895LBD/@@download/ENCFF895LBD.fastq.gz Illumina HiSeq 4000 /files/ENCFF722PTT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF609YIV bam unfiltered alignments ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF454XVM, ENCFF643CGH, ENCFF895LBD 5782036295 ENCODE Processing Pipeline becf9ea893c8ef951c583f3db454e21a https://www.encodeproject.org/files/ENCFF609YIV/@@download/ENCFF609YIV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF231PHQ bam alignments ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF454XVM, ENCFF643CGH, ENCFF895LBD 3928479674 ENCODE Processing Pipeline f529ae7441709fb24307e67d66f89485 https://www.encodeproject.org/files/ENCFF231PHQ/@@download/ENCFF231PHQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF570KXC bam unfiltered alignments ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF454XVM, ENCFF807MUK, ENCFF895LBD 5781263662 ENCODE Processing Pipeline fd39fb1db5c067b25ad7f24633a3daf2 https://www.encodeproject.org/files/ENCFF570KXC/@@download/ENCFF570KXC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF714MWU bam alignments ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF454XVM, ENCFF807MUK, ENCFF895LBD 3924718920 ENCODE Processing Pipeline 6a211702e694c9668389c6451b285006 https://www.encodeproject.org/files/ENCFF714MWU/@@download/ENCFF714MWU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF793BHE bigWig signal p-value ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF714MWU 1324972069 ENCODE Processing Pipeline 51cbc89c4592b46e1ba399bdd916d5b8 https://www.encodeproject.org/files/ENCFF793BHE/@@download/ENCFF793BHE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF643PXH bigWig fold change over control ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF714MWU 1281031068 ENCODE Processing Pipeline bd79e3a6aacdf1027957aa64d39ba554 https://www.encodeproject.org/files/ENCFF643PXH/@@download/ENCFF643PXH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF781UJS bigBed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF300UJN 11838629 ENCODE Processing Pipeline 3f8996ce69401825ce2ee426ce2bc0bd https://www.encodeproject.org/files/ENCFF781UJS/@@download/ENCFF781UJS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF434FDS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF112ACP 1391756 ENCODE Processing Pipeline ab8d699256a89aefe1b48714a4208c85 https://www.encodeproject.org/files/ENCFF434FDS/@@download/ENCFF434FDS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF300UJN bed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF714MWU 6414247 ENCODE Processing Pipeline 16579d4b9d4924e23c1e50d246a8f24f https://www.encodeproject.org/files/ENCFF300UJN/@@download/ENCFF300UJN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF112ACP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF300UJN 809701 ENCODE Processing Pipeline 93ed056a9f4c1a0553ad3e379b0785ab https://www.encodeproject.org/files/ENCFF112ACP/@@download/ENCFF112ACP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF008FAN bigWig signal p-value ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF231PHQ, ENCFF894ZWD 1327248325 ENCODE Processing Pipeline 057a97a430ebf748162836c3f41fc9f3 https://www.encodeproject.org/files/ENCFF008FAN/@@download/ENCFF008FAN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF683ZWT bigWig fold change over control ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF231PHQ, ENCFF894ZWD 1278981348 ENCODE Processing Pipeline 69d90b83605f3f2adee0f327642c2096 https://www.encodeproject.org/files/ENCFF683ZWT/@@download/ENCFF683ZWT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF975SBX bed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF231PHQ, ENCFF894ZWD 6421941 ENCODE Processing Pipeline 49915e4602a4af5a660c2345e7467bf8 https://www.encodeproject.org/files/ENCFF975SBX/@@download/ENCFF975SBX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF836CFE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF486UBE 1401653 ENCODE Processing Pipeline d8ae7d24d22b371423de1059f443fd10 https://www.encodeproject.org/files/ENCFF836CFE/@@download/ENCFF836CFE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF486UBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF975SBX 814985 ENCODE Processing Pipeline c8844ea7cf8355c685674fe4c19ea862 https://www.encodeproject.org/files/ENCFF486UBE/@@download/ENCFF486UBE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF210IZK bigBed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF975SBX 11864131 ENCODE Processing Pipeline c75a5df66ec5d1d8c56ea556e76e349d https://www.encodeproject.org/files/ENCFF210IZK/@@download/ENCFF210IZK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000VUC bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VUU 255647819 Michael Snyder, Stanford e735ec94ce4d7716373aa0a3e1769e6b https://www.encodeproject.org/files/ENCFF000VUC/@@download/ENCFF000VUC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000VUD bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VED 3168880 Michael Snyder, Stanford 2b47795580c65c0689f28092d213302d https://www.encodeproject.org/files/ENCFF000VUD/@@download/ENCFF000VUD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000VUE bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VUW 441787382 Michael Snyder, Stanford f4dd7412a968abb7f5e62eee1a80113d https://www.encodeproject.org/files/ENCFF000VUE/@@download/ENCFF000VUE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000VUF bigWig signal ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 286285853 Michael Snyder, Stanford d806bfbb7d266c4a66bee9219551bbcb https://www.encodeproject.org/files/ENCFF000VUF/@@download/ENCFF000VUF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000VUU fastq reads ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 498872610 Michael Snyder, Stanford d3da121a3f993c6415bd26a997f707fe https://www.encodeproject.org/files/ENCFF000VUU/@@download/ENCFF000VUU.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000VUW fastq reads ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 975456486 Michael Snyder, Stanford 2480a4d7c374b56e50e7e06a4bf22ec4 https://www.encodeproject.org/files/ENCFF000VUW/@@download/ENCFF000VUW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF001VED bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1493975 Michael Snyder, Stanford 516f23be901386790d57744858feb099 https://www.encodeproject.org/files/ENCFF001VED/@@download/ENCFF001VED.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF002COQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1184123 ENCODE Consortium Analysis Working Group bc28241ebe7f2e85f79563568ea724dc https://www.encodeproject.org/files/ENCFF002COQ/@@download/ENCFF002COQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF033WBF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COQ 2408937 ENCODE Consortium 2e42e8fce8766bf3c5fd4e6917912ea5 https://www.encodeproject.org/files/ENCFF033WBF/@@download/ENCFF033WBF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF037QRA bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF643CGH 517503005 ENCODE Processing Pipeline 5a855ac4844d71ef8a1abef8320c7570 https://www.encodeproject.org/files/ENCFF037QRA/@@download/ENCFF037QRA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF869TVW bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF643CGH 944065071 ENCODE Processing Pipeline 280a6076cb65995a9eca3f6d844b0d6f https://www.encodeproject.org/files/ENCFF869TVW/@@download/ENCFF869TVW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF033WII bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF643CGH 305311464 ENCODE Processing Pipeline fcc12a1320bee85526d5fe8244996301 https://www.encodeproject.org/files/ENCFF033WII/@@download/ENCFF033WII.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF162QXM bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF643CGH 538905893 ENCODE Processing Pipeline 4fe6bbb98f94a950c4ba95cb84ecce3f https://www.encodeproject.org/files/ENCFF162QXM/@@download/ENCFF162QXM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF124LLI bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF807MUK 941997706 ENCODE Processing Pipeline 40a7054926227de71641035bcff35e9b https://www.encodeproject.org/files/ENCFF124LLI/@@download/ENCFF124LLI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF677ISQ bam unfiltered alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF807MUK 515820343 ENCODE Processing Pipeline eea142f3ba19f30b06f91c005db67ce2 https://www.encodeproject.org/files/ENCFF677ISQ/@@download/ENCFF677ISQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF584BRF bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF807MUK 304486465 ENCODE Processing Pipeline e605631568877c1172825b6dabc03f5a https://www.encodeproject.org/files/ENCFF584BRF/@@download/ENCFF584BRF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF119SGJ bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF807MUK 538888360 ENCODE Processing Pipeline 23a5e8faa711ac4c449e7a135b621adc https://www.encodeproject.org/files/ENCFF119SGJ/@@download/ENCFF119SGJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF799POZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710VEH 1325046 ENCODE Processing Pipeline 720a6a4191c6c1cc7106f005a0dffe35 https://www.encodeproject.org/files/ENCFF799POZ/@@download/ENCFF799POZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF578TBN bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF157YWH, ENCFF162QXM 331292671 ENCODE Processing Pipeline ad8227742b009da81c2cdc954826c3f6 https://www.encodeproject.org/files/ENCFF578TBN/@@download/ENCFF578TBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF135JPN bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF529YRA 5628007 ENCODE Processing Pipeline 018b221fbd9b883f22959b2c6c5236c5 https://www.encodeproject.org/files/ENCFF135JPN/@@download/ENCFF135JPN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF960ZGP bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100GSO, ENCFF117WKK, ENCFF419RSJ, ENCFF529YRA 705627 ENCODE Processing Pipeline 0f3674df76186be18d25ecc0ffcf3725 https://www.encodeproject.org/files/ENCFF960ZGP/@@download/ENCFF960ZGP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF271YKQ bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 224632462 ENCODE Processing Pipeline c0faf5b5ea845af08d49b47137a8cd87 https://www.encodeproject.org/files/ENCFF271YKQ/@@download/ENCFF271YKQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF737EHN bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 204106523 ENCODE Processing Pipeline 83da3ae20572783828ca31b4ef503899 https://www.encodeproject.org/files/ENCFF737EHN/@@download/ENCFF737EHN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF421IOC bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 151263992 ENCODE Processing Pipeline 2c3848428152613653c24d7018ff8ea3 https://www.encodeproject.org/files/ENCFF421IOC/@@download/ENCFF421IOC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF529YRA bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII, ENCFF157YWH 2813118 ENCODE Processing Pipeline 90bc2c3005fc5db4ffdb6bbb8eb7ce38 https://www.encodeproject.org/files/ENCFF529YRA/@@download/ENCFF529YRA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF481HZS bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 222389399 ENCODE Processing Pipeline 01c048d24e7ba20159182a62da398ca9 https://www.encodeproject.org/files/ENCFF481HZS/@@download/ENCFF481HZS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF749HDD bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 194157298 ENCODE Processing Pipeline ad02e17fae574d9183a9c91f2e770da6 https://www.encodeproject.org/files/ENCFF749HDD/@@download/ENCFF749HDD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF312KXX bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 331288517 ENCODE Processing Pipeline 617cd794ff920e9813488171ab2859d4 https://www.encodeproject.org/files/ENCFF312KXX/@@download/ENCFF312KXX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF256QBB bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 3988271 ENCODE Processing Pipeline cf3777546d0abfe725a842aadb87a1ef https://www.encodeproject.org/files/ENCFF256QBB/@@download/ENCFF256QBB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF307KRD bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 2707163 ENCODE Processing Pipeline 2f5800e66ceebed018a31ec8f28b889e https://www.encodeproject.org/files/ENCFF307KRD/@@download/ENCFF307KRD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF833GQU bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119SGJ, ENCFF420MOQ, ENCFF584BRF 1978198 ENCODE Processing Pipeline 460493742288307995585489be7ba6bb https://www.encodeproject.org/files/ENCFF833GQU/@@download/ENCFF833GQU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF517KJP bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF256QBB 7759390 ENCODE Processing Pipeline e4d3c60bb285d69045872be7b06cc4de https://www.encodeproject.org/files/ENCFF517KJP/@@download/ENCFF517KJP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF585YVM bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF307KRD 5409546 ENCODE Processing Pipeline d2e23d650d7517e1466213c4060a0f6f https://www.encodeproject.org/files/ENCFF585YVM/@@download/ENCFF585YVM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF669YEM bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF833GQU 4484870 ENCODE Processing Pipeline 3bff1df4091d8bb1fc5dd48a011df789 https://www.encodeproject.org/files/ENCFF669YEM/@@download/ENCFF669YEM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF710VEH bed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF256QBB, ENCFF307KRD, ENCFF833GQU 702399 ENCODE Processing Pipeline cc13297e7415d8e276f3516031835828 https://www.encodeproject.org/files/ENCFF710VEH/@@download/ENCFF710VEH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF475JTC bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF162QXM 222760094 ENCODE Processing Pipeline 333faa17ab2f0ea893bd839478700501 https://www.encodeproject.org/files/ENCFF475JTC/@@download/ENCFF475JTC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF117WKK bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF162QXM 4004974 ENCODE Processing Pipeline 9abd47eca17cd759ae473d8a34781f7c https://www.encodeproject.org/files/ENCFF117WKK/@@download/ENCFF117WKK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF232FCT bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF157YWH, ENCFF162QXM 211955342 ENCODE Processing Pipeline 21646b407b5ea525e170e42e2a026427 https://www.encodeproject.org/files/ENCFF232FCT/@@download/ENCFF232FCT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF100GSO bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF033WII, ENCFF157YWH, ENCFF162QXM 2012249 ENCODE Processing Pipeline 0aed950a86309798779db28d7393fdd4 https://www.encodeproject.org/files/ENCFF100GSO/@@download/ENCFF100GSO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF328MFL bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF117WKK 7820055 ENCODE Processing Pipeline c54eba5ccc2a038382d0baab70ee4b23 https://www.encodeproject.org/files/ENCFF328MFL/@@download/ENCFF328MFL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF925RST bigBed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100GSO 4565708 ENCODE Processing Pipeline f5835feec1c98b922f2a470188a5bf1e https://www.encodeproject.org/files/ENCFF925RST/@@download/ENCFF925RST.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF267NYF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF960ZGP 1330821 ENCODE Processing Pipeline 8e22c1abf9f5d319c15f008b2616d64a https://www.encodeproject.org/files/ENCFF267NYF/@@download/ENCFF267NYF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF414WYX bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF162QXM 224513727 ENCODE Processing Pipeline d1407ae0155aa0fc8cc9b3c3f273ab95 https://www.encodeproject.org/files/ENCFF414WYX/@@download/ENCFF414WYX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF997LDW bigWig signal p-value ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII, ENCFF157YWH 204900176 ENCODE Processing Pipeline c6ac5d2f9a87acdc5e39051916c311a0 https://www.encodeproject.org/files/ENCFF997LDW/@@download/ENCFF997LDW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF636ODI bigWig fold change over control ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF033WII, ENCFF157YWH 154927544 ENCODE Processing Pipeline 16b5b112985fe01e3c0c221fe85500bb https://www.encodeproject.org/files/ENCFF636ODI/@@download/ENCFF636ODI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF226CSU fastq reads ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 1 25 paired-ended 2 ENCFF799AHQ 439278447 Bradley Bernstein, Broad 8038e4cab6ae94ce2253e5ed84890d7f https://www.encodeproject.org/files/ENCFF226CSU/@@download/ENCFF226CSU.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, low read depth experiment not submitted to GEO missing controlled_by ENCFF270LMI fastq reads ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 1 25 paired-ended 2 ENCFF909CPR 412495448 Bradley Bernstein, Broad 93aae8c7dadd3cbe89c1e2cdcbcd8346 https://www.encodeproject.org/files/ENCFF270LMI/@@download/ENCFF270LMI.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, low read depth experiment not submitted to GEO missing controlled_by ENCFF799AHQ fastq reads ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 1 36 paired-ended 1 ENCFF226CSU 550909712 Bradley Bernstein, Broad 74ab3c2ed5a51181cce6a3a201a16394 https://www.encodeproject.org/files/ENCFF799AHQ/@@download/ENCFF799AHQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, borderline replicate concordance, low read depth, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF909CPR fastq reads ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 1 36 paired-ended 1 ENCFF270LMI 520574811 Bradley Bernstein, Broad cd99b81f9ead5d825f28002259494ab9 https://www.encodeproject.org/files/ENCFF909CPR/@@download/ENCFF909CPR.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF171HMF bam unfiltered alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 36 ENCFF799AHQ, ENCFF807MUK 829695031 ENCODE Processing Pipeline e54d0cef3111a3df6ca4fd510d208762 https://www.encodeproject.org/files/ENCFF171HMF/@@download/ENCFF171HMF.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF332ZMN bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 36 ENCFF799AHQ, ENCFF807MUK 577949912 ENCODE Processing Pipeline a6bf839511a7ff367e227cd1e4cde733 https://www.encodeproject.org/files/ENCFF332ZMN/@@download/ENCFF332ZMN.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF821QTN bam unfiltered alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 36 ENCFF643CGH, ENCFF909CPR 781431196 ENCODE Processing Pipeline f606ae5681331c86c2ee2fc70a7ee0f5 https://www.encodeproject.org/files/ENCFF821QTN/@@download/ENCFF821QTN.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF528IWA bam unfiltered alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 36 ENCFF643CGH, ENCFF799AHQ 835414888 ENCODE Processing Pipeline 70668f56864d386af703b2f7360715ad https://www.encodeproject.org/files/ENCFF528IWA/@@download/ENCFF528IWA.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF778SLS bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 36 ENCFF643CGH, ENCFF799AHQ 577680809 ENCODE Processing Pipeline 53336518afe12a24aee978efd39f0cf1 https://www.encodeproject.org/files/ENCFF778SLS/@@download/ENCFF778SLS.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF676QEN bam unfiltered alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 36 ENCFF807MUK, ENCFF909CPR 776293319 ENCODE Processing Pipeline dfc3b9ef5f62300b83578a738edb483e https://www.encodeproject.org/files/ENCFF676QEN/@@download/ENCFF676QEN.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF463DEV bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 36 ENCFF807MUK, ENCFF909CPR 544042009 ENCODE Processing Pipeline 8f397e7a0450701f6e3a57ab3e9ed1ff https://www.encodeproject.org/files/ENCFF463DEV/@@download/ENCFF463DEV.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF978GYX bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 36 ENCFF643CGH, ENCFF909CPR 543796703 ENCODE Processing Pipeline e294b507b0ce632a4f703ff73e9a1184 https://www.encodeproject.org/files/ENCFF978GYX/@@download/ENCFF978GYX.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF854XDN bigWig fold change over control ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF645CCA, ENCFF943MYJ, ENCFF978GYX 906829397 ENCODE Processing Pipeline 12b27a8077a52a7e78ec924b5c40a5e8 https://www.encodeproject.org/files/ENCFF854XDN/@@download/ENCFF854XDN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF002FVF bigWig fold change over control ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF645CCA, ENCFF778SLS, ENCFF943MYJ, ENCFF978GYX 1245340056 ENCODE Processing Pipeline f2664eb1442a92b9d92ba06129a8c3d7 https://www.encodeproject.org/files/ENCFF002FVF/@@download/ENCFF002FVF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF775SOL bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF645CCA, ENCFF943MYJ, ENCFF978GYX 6629691 ENCODE Processing Pipeline 6d8ef3172e2300760110f3845a330e3b https://www.encodeproject.org/files/ENCFF775SOL/@@download/ENCFF775SOL.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF009EQR bigBed narrowPeak conservative idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF209ALR 179923 ENCODE Processing Pipeline 9fdc9411b150d95a5bfb7fdef62ef8e5 https://www.encodeproject.org/files/ENCFF009EQR/@@download/ENCFF009EQR.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF501QII bed narrowPeak optimal idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF359XUE, ENCFF419RSJ, ENCFF491ZJY, ENCFF775SOL 55715 ENCODE Processing Pipeline e59b618aa7d4737b773b09828807101a https://www.encodeproject.org/files/ENCFF501QII/@@download/ENCFF501QII.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF473JKC bigWig fold change over control ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF645CCA, ENCFF778SLS, ENCFF943MYJ 858847350 ENCODE Processing Pipeline 41508494f85b4042277322f4db862c78 https://www.encodeproject.org/files/ENCFF473JKC/@@download/ENCFF473JKC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF597IIZ bigWig fold change over control ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF165PBN, ENCFF332ZMN, ENCFF705NOL 857192023 ENCODE Processing Pipeline 3233f21675c14c20a6865cb17d5976e4 https://www.encodeproject.org/files/ENCFF597IIZ/@@download/ENCFF597IIZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF359XUE bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF645CCA, ENCFF778SLS, ENCFF943MYJ 6840557 ENCODE Processing Pipeline 98becb82cd467636272d1a136d996f89 https://www.encodeproject.org/files/ENCFF359XUE/@@download/ENCFF359XUE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF431PAS bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF165PBN, ENCFF332ZMN, ENCFF705NOL 6872614 ENCODE Processing Pipeline 79a61ed0d249667ef8f1873e4b6707cd https://www.encodeproject.org/files/ENCFF431PAS/@@download/ENCFF431PAS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF762TXF bigBed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF359XUE 13021673 ENCODE Processing Pipeline b0387668e87225ace1e38e74ba0d5ee0 https://www.encodeproject.org/files/ENCFF762TXF/@@download/ENCFF762TXF.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF554KQU bigBed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF431PAS 12986988 ENCODE Processing Pipeline 758931a57e565160946961363eeb9620 https://www.encodeproject.org/files/ENCFF554KQU/@@download/ENCFF554KQU.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF751BGQ bigWig signal p-value ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF165PBN, ENCFF332ZMN, ENCFF705NOL 1096676450 ENCODE Processing Pipeline 300d641054ee571ac22c7e1852944860 https://www.encodeproject.org/files/ENCFF751BGQ/@@download/ENCFF751BGQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF414NMZ bigWig signal p-value ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF645CCA, ENCFF778SLS, ENCFF943MYJ, ENCFF978GYX 1250390800 ENCODE Processing Pipeline 5c768dfc03e87716d0fe4afcdbc06e92 https://www.encodeproject.org/files/ENCFF414NMZ/@@download/ENCFF414NMZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF027PQP bed narrowPeak conservative idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF359XUE, ENCFF419RSJ, ENCFF491ZJY, ENCFF775SOL 44001 ENCODE Processing Pipeline 0cf7276266ef95ac794f66fb8cde565b https://www.encodeproject.org/files/ENCFF027PQP/@@download/ENCFF027PQP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF087XUS bigWig signal p-value ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF165PBN, ENCFF463DEV, ENCFF705NOL 996165095 ENCODE Processing Pipeline 2a1ef2e25ec968a2ff2dac004e7781dc https://www.encodeproject.org/files/ENCFF087XUS/@@download/ENCFF087XUS.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF814TSC bigWig signal p-value ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF645CCA, ENCFF943MYJ, ENCFF978GYX 1083176552 ENCODE Processing Pipeline 64bc85fd7ee1debf28809076aaa4f823 https://www.encodeproject.org/files/ENCFF814TSC/@@download/ENCFF814TSC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF585ZRP bigWig signal p-value ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF645CCA, ENCFF778SLS, ENCFF943MYJ 1034196069 ENCODE Processing Pipeline 6a9c9d9a23bd93d53a1cc2387d6b7d07 https://www.encodeproject.org/files/ENCFF585ZRP/@@download/ENCFF585ZRP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF492DFM bigWig signal p-value ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF165PBN, ENCFF332ZMN, ENCFF463DEV, ENCFF705NOL 1379811172 ENCODE Processing Pipeline 4db7397482acce23dee3c9c2ae6e6810 https://www.encodeproject.org/files/ENCFF492DFM/@@download/ENCFF492DFM.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF126MJF bigWig fold change over control ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF165PBN, ENCFF463DEV, ENCFF705NOL 912220377 ENCODE Processing Pipeline c5a4d2e42aa02b328435be36f40474e9 https://www.encodeproject.org/files/ENCFF126MJF/@@download/ENCFF126MJF.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF764BTY bigWig fold change over control ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF165PBN, ENCFF332ZMN, ENCFF463DEV, ENCFF705NOL 1232878676 ENCODE Processing Pipeline f5d6f14977576fdb2ff66ea10a66c132 https://www.encodeproject.org/files/ENCFF764BTY/@@download/ENCFF764BTY.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF505ZFI bigBed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF775SOL 13163386 ENCODE Processing Pipeline 1c1ef1511965ef6edfd0494f03f66372 https://www.encodeproject.org/files/ENCFF505ZFI/@@download/ENCFF505ZFI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF356MPS bigBed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF491ZJY 12855194 ENCODE Processing Pipeline c7bcc778dc74bff6a4f506dc83f6c461 https://www.encodeproject.org/files/ENCFF356MPS/@@download/ENCFF356MPS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF209ALR bed narrowPeak conservative idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF001TDO, ENCFF035VDP, ENCFF431PAS, ENCFF503JVU 43479 ENCODE Processing Pipeline 57915c35b2b03c7af9f2250c30d5b634 https://www.encodeproject.org/files/ENCFF209ALR/@@download/ENCFF209ALR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF491ZJY bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF645CCA, ENCFF778SLS, ENCFF943MYJ, ENCFF978GYX 7215561 ENCODE Processing Pipeline 29c4f0aebf9280f4da3d443a2ba5c851 https://www.encodeproject.org/files/ENCFF491ZJY/@@download/ENCFF491ZJY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF135NLL bigBed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF503JVU 12783958 ENCODE Processing Pipeline 4786dbeb4d745bd5c74ada650793e8f5 https://www.encodeproject.org/files/ENCFF135NLL/@@download/ENCFF135NLL.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF928KZS bed narrowPeak optimal idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF001TDO, ENCFF035VDP, ENCFF431PAS, ENCFF503JVU 51092 ENCODE Processing Pipeline 097d1fa94b67b08eca336ee237fd9e9e https://www.encodeproject.org/files/ENCFF928KZS/@@download/ENCFF928KZS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF035VDP bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF165PBN, ENCFF463DEV, ENCFF705NOL 6736613 ENCODE Processing Pipeline d0c79d6e92adc86b08e9411b0de13847 https://www.encodeproject.org/files/ENCFF035VDP/@@download/ENCFF035VDP.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF503JVU bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF165PBN, ENCFF332ZMN, ENCFF463DEV, ENCFF705NOL 7232934 ENCODE Processing Pipeline f41af71591db8c9b32191de725fb5a8f https://www.encodeproject.org/files/ENCFF503JVU/@@download/ENCFF503JVU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF453HUN bigBed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF035VDP 13078988 ENCODE Processing Pipeline 051dc431cc8ebf58a481849cf17e06cc https://www.encodeproject.org/files/ENCFF453HUN/@@download/ENCFF453HUN.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF111JJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF027PQP 181371 ENCODE Processing Pipeline 293d381a3adfc65fa44693afaf9b8ff6 https://www.encodeproject.org/files/ENCFF111JJZ/@@download/ENCFF111JJZ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF027KUC bigBed narrowPeak optimal idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF501QII 210069 ENCODE Processing Pipeline 884bdcb0764afb1fd0e81db57277f86d https://www.encodeproject.org/files/ENCFF027KUC/@@download/ENCFF027KUC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF592ZKP bigBed narrowPeak optimal idr thresholded peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1, 2 ENCFF928KZS 198713 ENCODE Processing Pipeline 667743e4709d0dd58efdd7c1b12e6ac7 https://www.encodeproject.org/files/ENCFF592ZKP/@@download/ENCFF592ZKP.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF398PMO bam unfiltered alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF176RUD, ENCFF793URQ, ENCFF807MUK 3642955118 ENCODE Processing Pipeline 400b6b4b77b0b4a48e8b89ba52c2e78a https://www.encodeproject.org/files/ENCFF398PMO/@@download/ENCFF398PMO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF948NVQ bam unfiltered alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF410UIX, ENCFF807MUK, ENCFF932THV 5029338554 ENCODE Processing Pipeline 7cf49bd6d9fac81a78a3f8566d457ab8 https://www.encodeproject.org/files/ENCFF948NVQ/@@download/ENCFF948NVQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF793URQ fastq reads ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF176RUD 1763530336 Michael Snyder, Stanford 534d49bbde0c3cabcf67bef894df81f6 SRA:SRR5111350 https://www.encodeproject.org/files/ENCFF793URQ/@@download/ENCFF793URQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF417ORB/, /files/ENCFF839JCV/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF176RUD fastq reads ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF793URQ 1727929446 Michael Snyder, Stanford ffab989c20d7825f8c88ad33e4e127c0 SRA:SRR5111350 https://www.encodeproject.org/files/ENCFF176RUD/@@download/ENCFF176RUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF417ORB/, /files/ENCFF839JCV/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF932THV fastq reads ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF410UIX 2370165590 Michael Snyder, Stanford 0c73d81fe92377f5a582612a18b775d2 SRA:SRR5111351 https://www.encodeproject.org/files/ENCFF932THV/@@download/ENCFF932THV.fastq.gz Illumina HiSeq 2000 /files/ENCFF417ORB/, /files/ENCFF839JCV/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF410UIX fastq reads ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF932THV 2431013071 Michael Snyder, Stanford 566e5dfcea248238755fe8289b734cee SRA:SRR5111351 https://www.encodeproject.org/files/ENCFF410UIX/@@download/ENCFF410UIX.fastq.gz Illumina HiSeq 2000 /files/ENCFF417ORB/, /files/ENCFF839JCV/ released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF373IJK bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF176RUD, ENCFF793URQ, ENCFF807MUK 2603051587 ENCODE Processing Pipeline 2e09ab178a7d229421b1120bd114b79c https://www.encodeproject.org/files/ENCFF373IJK/@@download/ENCFF373IJK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF810SIO bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF410UIX, ENCFF807MUK, ENCFF932THV 3664764124 ENCODE Processing Pipeline 348f39e6abf9a2abbd8ecc08aafb9df5 https://www.encodeproject.org/files/ENCFF810SIO/@@download/ENCFF810SIO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF580QNQ bigWig signal p-value ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF419SJQ, ENCFF810SIO 900377972 ENCODE Processing Pipeline 7853371e6c74f8531efcd02694f20a58 https://www.encodeproject.org/files/ENCFF580QNQ/@@download/ENCFF580QNQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF331DUV bigWig signal p-value ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF373IJK, ENCFF419SJQ 952804942 ENCODE Processing Pipeline 9cd39af9edb18bfcaff4bbdcd2c14ff2 https://www.encodeproject.org/files/ENCFF331DUV/@@download/ENCFF331DUV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF843JFL bed narrowPeak conservative idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF075DYV, ENCFF475TJT, ENCFF869BQK 576225 ENCODE Processing Pipeline 3c1385c9f42cd85df9747babe13ee964 https://www.encodeproject.org/files/ENCFF843JFL/@@download/ENCFF843JFL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF878SUV bigWig signal p-value ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF373IJK, ENCFF419SJQ, ENCFF810SIO 1363045288 ENCODE Processing Pipeline dda05511120469749f22dcd2ff23003a https://www.encodeproject.org/files/ENCFF878SUV/@@download/ENCFF878SUV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF170SAP bigWig fold change over control ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF419SJQ, ENCFF810SIO 1008839745 ENCODE Processing Pipeline efe3f111799cd6acabffc15873827f4b https://www.encodeproject.org/files/ENCFF170SAP/@@download/ENCFF170SAP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF212KWL bigWig fold change over control ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF373IJK, ENCFF419SJQ 827791504 ENCODE Processing Pipeline 7f9a0c58d91c8a4e649ae7422581b91d https://www.encodeproject.org/files/ENCFF212KWL/@@download/ENCFF212KWL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF840IZZ bigWig fold change over control ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF373IJK, ENCFF419SJQ, ENCFF810SIO 1368993627 ENCODE Processing Pipeline 0af34d4ead07910ed9e8e3044a6d57b8 https://www.encodeproject.org/files/ENCFF840IZZ/@@download/ENCFF840IZZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF553ZZC bigBed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF869BQK 13537434 ENCODE Processing Pipeline 28dcefd8f0d6fd0c3dc7335345a29622 https://www.encodeproject.org/files/ENCFF553ZZC/@@download/ENCFF553ZZC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF626QSD bigBed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF075DYV 13411909 ENCODE Processing Pipeline 90d156f23042e6399390c630ba7d489d https://www.encodeproject.org/files/ENCFF626QSD/@@download/ENCFF626QSD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF075DYV bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF373IJK, ENCFF419SJQ 6482988 ENCODE Processing Pipeline b4263f8188f33604a937ef0883eb06a8 https://www.encodeproject.org/files/ENCFF075DYV/@@download/ENCFF075DYV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF475TJT bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF373IJK, ENCFF419SJQ, ENCFF810SIO 7099157 ENCODE Processing Pipeline 2fca638f5fd9daa6551ef2d4d8c8309d https://www.encodeproject.org/files/ENCFF475TJT/@@download/ENCFF475TJT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF439RUT bigBed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF475TJT 13419240 ENCODE Processing Pipeline fe551100076999de3fbef2a2a38c164d https://www.encodeproject.org/files/ENCFF439RUT/@@download/ENCFF439RUT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF869BQK bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF419SJQ, ENCFF810SIO 6589214 ENCODE Processing Pipeline b384399b73a3f804a294944539e1d43e https://www.encodeproject.org/files/ENCFF869BQK/@@download/ENCFF869BQK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF989SAT bigBed narrowPeak conservative idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF843JFL 1198059 ENCODE Processing Pipeline cc04941c594ceb184137dfb3c3af135b https://www.encodeproject.org/files/ENCFF989SAT/@@download/ENCFF989SAT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF168HAG bed narrowPeak optimal idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF075DYV, ENCFF475TJT, ENCFF869BQK 640919 ENCODE Processing Pipeline 2b8f415d6a0349fdfc57e3b592874f6a https://www.encodeproject.org/files/ENCFF168HAG/@@download/ENCFF168HAG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF961IPT bigBed narrowPeak optimal idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF168HAG 1296489 ENCODE Processing Pipeline e49d88e9e883a56f6814ec3ea8e64c29 https://www.encodeproject.org/files/ENCFF961IPT/@@download/ENCFF961IPT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF466NIM bam unfiltered alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF176RUD, ENCFF643CGH, ENCFF793URQ 3644567486 ENCODE Processing Pipeline 729f952a0c2969c2d91689587186516e https://www.encodeproject.org/files/ENCFF466NIM/@@download/ENCFF466NIM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF982QMD bam unfiltered alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF410UIX, ENCFF643CGH, ENCFF932THV 5032825375 ENCODE Processing Pipeline cbe035805b681791f3f8f161d10ea00d https://www.encodeproject.org/files/ENCFF982QMD/@@download/ENCFF982QMD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF616QUW bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF410UIX, ENCFF643CGH, ENCFF932THV 3666929390 ENCODE Processing Pipeline 0dfbe4948de8563c7806a9d52642e3e3 https://www.encodeproject.org/files/ENCFF616QUW/@@download/ENCFF616QUW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF577WGL bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF176RUD, ENCFF643CGH, ENCFF793URQ 2604331364 ENCODE Processing Pipeline ec8e1056919fc375620223cd90681740 https://www.encodeproject.org/files/ENCFF577WGL/@@download/ENCFF577WGL.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF490PNZ bigWig signal p-value ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF177OCL, ENCFF616QUW 889072406 ENCODE Processing Pipeline 078c27f824c5f5bba94e1e2b93234cc2 https://www.encodeproject.org/files/ENCFF490PNZ/@@download/ENCFF490PNZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF101FVL bigWig signal p-value ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF177OCL, ENCFF577WGL 931947288 ENCODE Processing Pipeline a436cf089ea7454044d318f1d816f543 https://www.encodeproject.org/files/ENCFF101FVL/@@download/ENCFF101FVL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF238GPP bigWig signal p-value ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF177OCL, ENCFF577WGL, ENCFF616QUW 1359498493 ENCODE Processing Pipeline 9d9a628b3fd39d69ab36acdfcba2d3e0 https://www.encodeproject.org/files/ENCFF238GPP/@@download/ENCFF238GPP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF307PGT bigWig fold change over control ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF177OCL, ENCFF616QUW 980870461 ENCODE Processing Pipeline 0fd12d0d1375649c24846d43db389a5b https://www.encodeproject.org/files/ENCFF307PGT/@@download/ENCFF307PGT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF213HRA bigWig fold change over control ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF177OCL, ENCFF577WGL 830889051 ENCODE Processing Pipeline a6aaefcf07dc663c895938f005e45ec4 https://www.encodeproject.org/files/ENCFF213HRA/@@download/ENCFF213HRA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF932TME bigWig fold change over control ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF177OCL, ENCFF577WGL, ENCFF616QUW 1364482324 ENCODE Processing Pipeline f172f21ecd4035dd8ff91e7befef0ba6 https://www.encodeproject.org/files/ENCFF932TME/@@download/ENCFF932TME.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF978TMB bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF177OCL, ENCFF577WGL 6361758 ENCODE Processing Pipeline 3e4f363a892bf0ba963f415a69f72397 https://www.encodeproject.org/files/ENCFF978TMB/@@download/ENCFF978TMB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF351RUD bigBed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF679MAR 13477385 ENCODE Processing Pipeline 35cba8ef6483e67c8c2660e5e528f2b1 https://www.encodeproject.org/files/ENCFF351RUD/@@download/ENCFF351RUD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF247CKB bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF177OCL, ENCFF616QUW 6502036 ENCODE Processing Pipeline 937f4d893f11be5f494452f393bf1db9 https://www.encodeproject.org/files/ENCFF247CKB/@@download/ENCFF247CKB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF679MAR bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF177OCL, ENCFF577WGL, ENCFF616QUW 7094989 ENCODE Processing Pipeline 9f2040f6084a9d186e469753a46173ff https://www.encodeproject.org/files/ENCFF679MAR/@@download/ENCFF679MAR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF729MOW bigBed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF247CKB 13578474 ENCODE Processing Pipeline 73130c250312f6907a973dc4ffcd96f4 https://www.encodeproject.org/files/ENCFF729MOW/@@download/ENCFF729MOW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF687HWS bigBed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF978TMB 13392693 ENCODE Processing Pipeline a92c4fd0a2fd8468cda0f3e854d80abe https://www.encodeproject.org/files/ENCFF687HWS/@@download/ENCFF687HWS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF608GNP bed narrowPeak conservative idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF247CKB, ENCFF419RSJ, ENCFF679MAR, ENCFF978TMB 592909 ENCODE Processing Pipeline 19345ce586e6271022ecbe50e0bd5d1d https://www.encodeproject.org/files/ENCFF608GNP/@@download/ENCFF608GNP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF024CIQ bigBed narrowPeak conservative idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF608GNP 1221397 ENCODE Processing Pipeline 0cb85d34813f487362f70a7654f1a629 https://www.encodeproject.org/files/ENCFF024CIQ/@@download/ENCFF024CIQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF685CMQ bed narrowPeak optimal idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF247CKB, ENCFF419RSJ, ENCFF679MAR, ENCFF978TMB 654021 ENCODE Processing Pipeline 2378aad048bf2262655ce86dae031382 https://www.encodeproject.org/files/ENCFF685CMQ/@@download/ENCFF685CMQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF455LIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF685CMQ 1316015 ENCODE Processing Pipeline 17d619f3f8d7bde5ed1eb96bf425ad5f https://www.encodeproject.org/files/ENCFF455LIQ/@@download/ENCFF455LIQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF231TGV fastq reads ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 2 ENCFF276RGL 2975823740 Michael Snyder, Stanford 000deb751bef15e47400877e17d3534f SRA:SRR6212872 https://www.encodeproject.org/files/ENCFF231TGV/@@download/ENCFF231TGV.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF276RGL fastq reads ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 1 ENCFF231TGV 2745062703 Michael Snyder, Stanford b54e04eb62ca7067f55a927fc1007a7b SRA:SRR6212872 https://www.encodeproject.org/files/ENCFF276RGL/@@download/ENCFF276RGL.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF576EVC fastq reads ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 1 ENCFF805AVF 2661553577 Michael Snyder, Stanford 87980fc8d4b5be18a4585f33e6309523 SRA:SRR6212873 https://www.encodeproject.org/files/ENCFF576EVC/@@download/ENCFF576EVC.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF805AVF fastq reads ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 2 ENCFF576EVC 2906354365 Michael Snyder, Stanford 8061cfe2e0da160de30acb8ecee2541b SRA:SRR6212873 https://www.encodeproject.org/files/ENCFF805AVF/@@download/ENCFF805AVF.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF757YKP bam unfiltered alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF576EVC, ENCFF805AVF, ENCFF807MUK 5384457610 ENCODE Processing Pipeline 95c34459cf9b867325fa46f8575326b6 https://www.encodeproject.org/files/ENCFF757YKP/@@download/ENCFF757YKP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF672AOG bam unfiltered alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF231TGV, ENCFF276RGL, ENCFF807MUK 5625689376 ENCODE Processing Pipeline be5584b1c7091613d9deb2c099884876 https://www.encodeproject.org/files/ENCFF672AOG/@@download/ENCFF672AOG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF927PKK bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF576EVC, ENCFF805AVF, ENCFF807MUK 3844588516 ENCODE Processing Pipeline fa33526f8aa55345a67204b8f8dcbc9b https://www.encodeproject.org/files/ENCFF927PKK/@@download/ENCFF927PKK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593YDQ bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF231TGV, ENCFF276RGL, ENCFF807MUK 4283040091 ENCODE Processing Pipeline a942f1b8451bd8f935549f17f7bc455a https://www.encodeproject.org/files/ENCFF593YDQ/@@download/ENCFF593YDQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF496FJD bam unfiltered alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF576EVC, ENCFF643CGH, ENCFF805AVF 5391403445 ENCODE Processing Pipeline c9a303624fc07ea01ed2c409559c09c5 https://www.encodeproject.org/files/ENCFF496FJD/@@download/ENCFF496FJD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF110TPP bam unfiltered alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF231TGV, ENCFF276RGL, ENCFF643CGH 5633480345 ENCODE Processing Pipeline a5b43168ce30685ae36148cb1afdd4a2 https://www.encodeproject.org/files/ENCFF110TPP/@@download/ENCFF110TPP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF490YME bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF576EVC, ENCFF643CGH, ENCFF805AVF 3850107825 ENCODE Processing Pipeline 343bd0ea3e844af012febaba80131957 https://www.encodeproject.org/files/ENCFF490YME/@@download/ENCFF490YME.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF794MPI bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF231TGV, ENCFF276RGL, ENCFF643CGH 4288649564 ENCODE Processing Pipeline 5d37d50796f840118fd5f8faf2f325be https://www.encodeproject.org/files/ENCFF794MPI/@@download/ENCFF794MPI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF609ZEP bigWig signal p-value ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF790TAN, ENCFF794MPI 1205399758 ENCODE Processing Pipeline 46d30fdf566cde97dc3b63b292acf070 https://www.encodeproject.org/files/ENCFF609ZEP/@@download/ENCFF609ZEP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF686DEX bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF490YME, ENCFF712WXB 6764661 ENCODE Processing Pipeline 339648fd144d43e9f9ead1f0457cc4f6 https://www.encodeproject.org/files/ENCFF686DEX/@@download/ENCFF686DEX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF295AWJ bigBed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF748JQT 12873644 ENCODE Processing Pipeline 19aa7aa03ea608f7c779dda0aed30a7a https://www.encodeproject.org/files/ENCFF295AWJ/@@download/ENCFF295AWJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF447LRS bigBed narrowPeak conservative idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF565ADA 87844 ENCODE Processing Pipeline 2060d18cebe81b14b436a7da645b9bf5 https://www.encodeproject.org/files/ENCFF447LRS/@@download/ENCFF447LRS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF450XAX bigWig signal p-value ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF490YME, ENCFF712WXB 1000276410 ENCODE Processing Pipeline caf22b6a27a40aa7093260eb829692d7 https://www.encodeproject.org/files/ENCFF450XAX/@@download/ENCFF450XAX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF870WRB bigWig signal p-value ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF490YME, ENCFF712WXB, ENCFF790TAN, ENCFF794MPI 1565142772 ENCODE Processing Pipeline 771e63e2caf3f0639a604dc0dfc11389 https://www.encodeproject.org/files/ENCFF870WRB/@@download/ENCFF870WRB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF869MLQ bigWig fold change over control ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF790TAN, ENCFF794MPI 1402806753 ENCODE Processing Pipeline 81af86ec83979f86d6021699844c2fd7 https://www.encodeproject.org/files/ENCFF869MLQ/@@download/ENCFF869MLQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF565ADA bed narrowPeak conservative idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF673NII, ENCFF686DEX, ENCFF748JQT 7842 ENCODE Processing Pipeline b9ca9de77e9af0d7e4d60c4c27995e42 https://www.encodeproject.org/files/ENCFF565ADA/@@download/ENCFF565ADA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF652NES bed narrowPeak optimal idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF673NII, ENCFF686DEX, ENCFF748JQT 16317 ENCODE Processing Pipeline a0c2cc1d1d1efce88907aa5363d135e5 https://www.encodeproject.org/files/ENCFF652NES/@@download/ENCFF652NES.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF544ZIB bigWig signal p-value ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF160VXC, ENCFF593YDQ, ENCFF834TUP, ENCFF927PKK 1881939096 ENCODE Processing Pipeline 9bbedd56a8f79367a7162f2ea54d1cd9 https://www.encodeproject.org/files/ENCFF544ZIB/@@download/ENCFF544ZIB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF782SPN bigWig fold change over control ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF490YME, ENCFF712WXB 1311560498 ENCODE Processing Pipeline a6e0592fedfe52d24b2db78cb03364d9 https://www.encodeproject.org/files/ENCFF782SPN/@@download/ENCFF782SPN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF748JQT bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF490YME, ENCFF712WXB, ENCFF790TAN, ENCFF794MPI 7221944 ENCODE Processing Pipeline 72916aba8bafc8cb14999bac17914f99 https://www.encodeproject.org/files/ENCFF748JQT/@@download/ENCFF748JQT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF789WBS bigBed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF673NII 10719702 ENCODE Processing Pipeline cdfd05f98270a68a8e2519e27bd7029a https://www.encodeproject.org/files/ENCFF789WBS/@@download/ENCFF789WBS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF434BFU bigBed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF686DEX 12981346 ENCODE Processing Pipeline bd007819f57f120acb20dd134c350529 https://www.encodeproject.org/files/ENCFF434BFU/@@download/ENCFF434BFU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF126VNJ bigWig signal p-value ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF160VXC, ENCFF593YDQ 1014285289 ENCODE Processing Pipeline ed4f2e9c3d6366ecbc6fe0b2ed03df8b https://www.encodeproject.org/files/ENCFF126VNJ/@@download/ENCFF126VNJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF060DEI bigBed narrowPeak optimal idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF652NES 107862 ENCODE Processing Pipeline 7c7c9d47f8d1ca85081107f32bb5dd74 https://www.encodeproject.org/files/ENCFF060DEI/@@download/ENCFF060DEI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF549BUB bigWig fold change over control ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF490YME, ENCFF712WXB, ENCFF790TAN, ENCFF794MPI 2266697757 ENCODE Processing Pipeline e654616856ad2884db60db5873a3cf44 https://www.encodeproject.org/files/ENCFF549BUB/@@download/ENCFF549BUB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF673NII bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF790TAN, ENCFF794MPI 6586688 ENCODE Processing Pipeline 9efc5df0fe779e4476592da4eabc766a https://www.encodeproject.org/files/ENCFF673NII/@@download/ENCFF673NII.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF479JNC bigWig signal p-value ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF834TUP, ENCFF927PKK 1231496408 ENCODE Processing Pipeline df9339871381f33db01313d6a22df652 https://www.encodeproject.org/files/ENCFF479JNC/@@download/ENCFF479JNC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF794MUJ bigWig fold change over control ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF160VXC, ENCFF593YDQ 1393873126 ENCODE Processing Pipeline f040f872fd25af7e0bb10d7d8fbc6f87 https://www.encodeproject.org/files/ENCFF794MUJ/@@download/ENCFF794MUJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF002UZC bigWig fold change over control ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF834TUP, ENCFF927PKK 1306990526 ENCODE Processing Pipeline 0de4a37ece00de9fca20a40839bd0f58 https://www.encodeproject.org/files/ENCFF002UZC/@@download/ENCFF002UZC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF279WBA bigWig fold change over control ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF160VXC, ENCFF593YDQ, ENCFF834TUP, ENCFF927PKK 2295151493 ENCODE Processing Pipeline e4be9234bd37cf0e77658ea58c43b99e https://www.encodeproject.org/files/ENCFF279WBA/@@download/ENCFF279WBA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF248TTW bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF160VXC, ENCFF593YDQ, ENCFF834TUP, ENCFF927PKK 7216159 ENCODE Processing Pipeline 1112da394d3650229b3ebe1cf8bbbd23 https://www.encodeproject.org/files/ENCFF248TTW/@@download/ENCFF248TTW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF302RJE bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF160VXC, ENCFF593YDQ 6620058 ENCODE Processing Pipeline c1eca67e5d636b2e1ffce3d0369a48d8 https://www.encodeproject.org/files/ENCFF302RJE/@@download/ENCFF302RJE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF355GZC bigBed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF302RJE 10706988 ENCODE Processing Pipeline a394c483cd8c71d186d16144e610ba49 https://www.encodeproject.org/files/ENCFF355GZC/@@download/ENCFF355GZC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF439JGZ bigBed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF507JPU 12966646 ENCODE Processing Pipeline 4f5ff5bab87b0ac8f519d928766761bc https://www.encodeproject.org/files/ENCFF439JGZ/@@download/ENCFF439JGZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF708LIZ bed narrowPeak conservative idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF248TTW, ENCFF302RJE, ENCFF507JPU 7468 ENCODE Processing Pipeline a90c858ec47788b6b5c67ca3a0deeaf7 https://www.encodeproject.org/files/ENCFF708LIZ/@@download/ENCFF708LIZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF507JPU bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF834TUP, ENCFF927PKK 6761455 ENCODE Processing Pipeline 192e9a0745904e52ee8620b8be176c1b https://www.encodeproject.org/files/ENCFF507JPU/@@download/ENCFF507JPU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF978EJQ bigBed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF248TTW 12856241 ENCODE Processing Pipeline cbcb51298e854f7c210df430f341b42c https://www.encodeproject.org/files/ENCFF978EJQ/@@download/ENCFF978EJQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF549GMO bed narrowPeak optimal idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF248TTW, ENCFF302RJE, ENCFF507JPU 18922 ENCODE Processing Pipeline df978590cd462b0053dd3bfc64f17142 https://www.encodeproject.org/files/ENCFF549GMO/@@download/ENCFF549GMO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF352HZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF708LIZ 85486 ENCODE Processing Pipeline aa86aef2b7cf027924cedaf94a95bdf3 https://www.encodeproject.org/files/ENCFF352HZZ/@@download/ENCFF352HZZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF480QAT bigBed narrowPeak optimal idr thresholded peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF549GMO 98788 ENCODE Processing Pipeline 8a6d6d7fadb88ffb4755df4484c20ade https://www.encodeproject.org/files/ENCFF480QAT/@@download/ENCFF480QAT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF622VFM fastq reads ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF279ILV 1859038940 Michael Snyder, Stanford 35d3f4d9789716fd786b4580b18f739f SRA:SRR6214398 https://www.encodeproject.org/files/ENCFF622VFM/@@download/ENCFF622VFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF279ILV fastq reads ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF622VFM 1810065988 Michael Snyder, Stanford 5bd280216d6c7b36416bdc484b738c4e SRA:SRR6214398 https://www.encodeproject.org/files/ENCFF279ILV/@@download/ENCFF279ILV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF889XNL fastq reads ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF586TBV 4502421177 Michael Snyder, Stanford 33af50dd63b67fa49df1a33963beb75a SRA:SRR6214399 https://www.encodeproject.org/files/ENCFF889XNL/@@download/ENCFF889XNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF586TBV fastq reads ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF889XNL 4634095859 Michael Snyder, Stanford 01d083c1669dafe9b09928a4a79c5c2c SRA:SRR6214399 https://www.encodeproject.org/files/ENCFF586TBV/@@download/ENCFF586TBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF707BLX bam unfiltered alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF279ILV, ENCFF622VFM, ENCFF807MUK 4197488562 ENCODE Processing Pipeline be82687a4178ffa3e0368c73d3e9e074 https://www.encodeproject.org/files/ENCFF707BLX/@@download/ENCFF707BLX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF782ZLH bam unfiltered alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF279ILV, ENCFF622VFM, ENCFF643CGH 4204554488 ENCODE Processing Pipeline 44f4126534fac51c27ced68375b76ab3 https://www.encodeproject.org/files/ENCFF782ZLH/@@download/ENCFF782ZLH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF460FZM bam unfiltered alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF586TBV, ENCFF807MUK, ENCFF889XNL 9277168174 ENCODE Processing Pipeline 5f9a45ef72e252bfe7db68392a2a9d6a https://www.encodeproject.org/files/ENCFF460FZM/@@download/ENCFF460FZM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF283OJW bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF279ILV, ENCFF622VFM, ENCFF807MUK 3767899679 ENCODE Processing Pipeline cb65799fc49c071ffaad93109639e4b5 https://www.encodeproject.org/files/ENCFF283OJW/@@download/ENCFF283OJW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF335GRT bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF279ILV, ENCFF622VFM, ENCFF643CGH 3767810753 ENCODE Processing Pipeline c080984ad9eec959832c28d38acea088 https://www.encodeproject.org/files/ENCFF335GRT/@@download/ENCFF335GRT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF622ITJ bam unfiltered alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF586TBV, ENCFF643CGH, ENCFF889XNL 9290455149 ENCODE Processing Pipeline 29e7a8f91f5b23b2f0714759e6cb9ac3 https://www.encodeproject.org/files/ENCFF622ITJ/@@download/ENCFF622ITJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF458NRE bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF586TBV, ENCFF807MUK, ENCFF889XNL 7579306749 ENCODE Processing Pipeline b42ff516e79d69f417468feece97d64e https://www.encodeproject.org/files/ENCFF458NRE/@@download/ENCFF458NRE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF643PRF bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF586TBV, ENCFF643CGH, ENCFF889XNL 7579409850 ENCODE Processing Pipeline 9e8c7b875065097dc32e5ba4a99cb260 https://www.encodeproject.org/files/ENCFF643PRF/@@download/ENCFF643PRF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF941KCM bigWig signal p-value ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF458NRE 1543722820 ENCODE Processing Pipeline 754ef35544897a0efce78823ebf0c2e7 https://www.encodeproject.org/files/ENCFF941KCM/@@download/ENCFF941KCM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF588QJL bigWig fold change over control ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF458NRE 1657484806 ENCODE Processing Pipeline 6b7a47fbbcb25b8c49a6584075fb19db https://www.encodeproject.org/files/ENCFF588QJL/@@download/ENCFF588QJL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF798SQU bigWig signal p-value ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF335GRT 1344993220 ENCODE Processing Pipeline 58ce4a704a669daa5c42b6d8a245a38b https://www.encodeproject.org/files/ENCFF798SQU/@@download/ENCFF798SQU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF448UDC bigWig fold change over control ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF335GRT 1236839510 ENCODE Processing Pipeline fd16681762eb202a0a8a92e874037bac https://www.encodeproject.org/files/ENCFF448UDC/@@download/ENCFF448UDC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF772TUZ bigWig signal p-value ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF643PRF 1398871877 ENCODE Processing Pipeline b30a349cc12d757451d89e046e7d18b3 https://www.encodeproject.org/files/ENCFF772TUZ/@@download/ENCFF772TUZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF045ZTL bigWig signal p-value ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF283OJW 1288414830 ENCODE Processing Pipeline c74593a8046ebe14b65765b378a59923 https://www.encodeproject.org/files/ENCFF045ZTL/@@download/ENCFF045ZTL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF354QRW bigWig fold change over control ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF283OJW 1240375677 ENCODE Processing Pipeline 44973e19e76223b5fc22cfaf8c48b366 https://www.encodeproject.org/files/ENCFF354QRW/@@download/ENCFF354QRW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF032WXH bigWig signal p-value ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF335GRT, ENCFF643PRF 1913301706 ENCODE Processing Pipeline d2e06ca1d874433ef973fa49ee57afca https://www.encodeproject.org/files/ENCFF032WXH/@@download/ENCFF032WXH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF227YBZ bigWig signal p-value ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF283OJW, ENCFF458NRE 1900825511 ENCODE Processing Pipeline 0a70e225c5a789070062e436fcd782ee https://www.encodeproject.org/files/ENCFF227YBZ/@@download/ENCFF227YBZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF735AUV bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF283OJW 6972072 ENCODE Processing Pipeline 30c28ad8dbc170455676230b350d1d81 https://www.encodeproject.org/files/ENCFF735AUV/@@download/ENCFF735AUV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF251WTV bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF458NRE 7164505 ENCODE Processing Pipeline e00a453ccca03e05d1020e64e7f2bc28 https://www.encodeproject.org/files/ENCFF251WTV/@@download/ENCFF251WTV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF087WLI bigBed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF735AUV 13407671 ENCODE Processing Pipeline f81d8e1bf097becb3bac8944c0d74250 https://www.encodeproject.org/files/ENCFF087WLI/@@download/ENCFF087WLI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF284GIN bigWig fold change over control ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF335GRT, ENCFF643PRF 2063578990 ENCODE Processing Pipeline e5c6b153633d4195824de19d47c2b59c https://www.encodeproject.org/files/ENCFF284GIN/@@download/ENCFF284GIN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF444WJL bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF643PRF 7159859 ENCODE Processing Pipeline d7d95ea32d938656fc79ffddcde7e49d https://www.encodeproject.org/files/ENCFF444WJL/@@download/ENCFF444WJL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF101AAV bigBed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF834EJV 13327798 ENCODE Processing Pipeline 107b8091efd5024fdd5d5eb456bf5a4b https://www.encodeproject.org/files/ENCFF101AAV/@@download/ENCFF101AAV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF116EAX bigBed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF444WJL 13341198 ENCODE Processing Pipeline 8e14e40e04b6098ef215684e4189bc81 https://www.encodeproject.org/files/ENCFF116EAX/@@download/ENCFF116EAX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF987PJI bigWig fold change over control ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF643PRF 1660037017 ENCODE Processing Pipeline bc13ea63ef5cfb193da2ce215f77d2d0 https://www.encodeproject.org/files/ENCFF987PJI/@@download/ENCFF987PJI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF834EJV bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF283OJW, ENCFF458NRE 7273921 ENCODE Processing Pipeline 405d791b560d2208bf10854cfdaee3c5 https://www.encodeproject.org/files/ENCFF834EJV/@@download/ENCFF834EJV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF737MLQ bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF335GRT, ENCFF643PRF 7274493 ENCODE Processing Pipeline 38513d94112eae9bc89dc2878a3ed471 https://www.encodeproject.org/files/ENCFF737MLQ/@@download/ENCFF737MLQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF769YKQ bed narrowPeak conservative idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF251WTV, ENCFF735AUV, ENCFF834EJV 768391 ENCODE Processing Pipeline 60ee667466ab6f3cc75ff2440383641f https://www.encodeproject.org/files/ENCFF769YKQ/@@download/ENCFF769YKQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF098XNJ bed narrowPeak conservative idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF444WJL, ENCFF737MLQ, ENCFF838ZYK 764203 ENCODE Processing Pipeline dc04235015620b0aa0495682917485af https://www.encodeproject.org/files/ENCFF098XNJ/@@download/ENCFF098XNJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF881BTM bigBed narrowPeak conservative idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF098XNJ 1753607 ENCODE Processing Pipeline 8f08c4ae11f3dbf9c6a22600be9d2f9a https://www.encodeproject.org/files/ENCFF881BTM/@@download/ENCFF881BTM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF838ZYK bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF335GRT 6957706 ENCODE Processing Pipeline 4b0421d0715a5631655ade1393b1ed19 https://www.encodeproject.org/files/ENCFF838ZYK/@@download/ENCFF838ZYK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF335XIJ bigBed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF251WTV 13338110 ENCODE Processing Pipeline 33ee45ae1b21b3a81e3d12ee9a293c63 https://www.encodeproject.org/files/ENCFF335XIJ/@@download/ENCFF335XIJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF977EVX bigBed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF737MLQ 13328499 ENCODE Processing Pipeline 5cb25340cf00118b2860e732283f9ab9 https://www.encodeproject.org/files/ENCFF977EVX/@@download/ENCFF977EVX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF561JEV bigWig fold change over control ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF283OJW, ENCFF458NRE 2051531711 ENCODE Processing Pipeline 28547421d7c1a183f067b47134a0a03e https://www.encodeproject.org/files/ENCFF561JEV/@@download/ENCFF561JEV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF231TWG bigBed narrowPeak optimal idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF292QIG 1912955 ENCODE Processing Pipeline f4e7d502b00910e750e6628ebbc00226 https://www.encodeproject.org/files/ENCFF231TWG/@@download/ENCFF231TWG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF196RWC bed narrowPeak optimal idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF444WJL, ENCFF737MLQ, ENCFF838ZYK 842398 ENCODE Processing Pipeline dfac59f18505bd537348378723a309e1 https://www.encodeproject.org/files/ENCFF196RWC/@@download/ENCFF196RWC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF849TBH bigBed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF838ZYK 13406776 ENCODE Processing Pipeline 6a992e5515ea518034196d599641149c https://www.encodeproject.org/files/ENCFF849TBH/@@download/ENCFF849TBH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF292QIG bed narrowPeak optimal idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF251WTV, ENCFF735AUV, ENCFF834EJV 850440 ENCODE Processing Pipeline a6fd0350a29c5772ed0f48223a09bd18 https://www.encodeproject.org/files/ENCFF292QIG/@@download/ENCFF292QIG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF158VIY bigBed narrowPeak conservative idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF769YKQ 1760018 ENCODE Processing Pipeline 8cfe6bc79bd2e751dc70eee41343baea https://www.encodeproject.org/files/ENCFF158VIY/@@download/ENCFF158VIY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF612FNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF196RWC 1900306 ENCODE Processing Pipeline 874b0ec609ccee20fa2f337a0f4c768d https://www.encodeproject.org/files/ENCFF612FNJ/@@download/ENCFF612FNJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF419KCV bam unfiltered alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF361RFX, ENCFF786WVF, ENCFF807MUK 6120826644 ENCODE Processing Pipeline 461c8b9dd09e17f6acac7240adbd6ad6 https://www.encodeproject.org/files/ENCFF419KCV/@@download/ENCFF419KCV.bam hg19 released low read depth ENCFF544GHE bam unfiltered alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 100 ENCFF163KYP, ENCFF479BPN, ENCFF807MUK 3308271273 ENCODE Processing Pipeline a538b3eedc0f49add7db967c090f17e7 https://www.encodeproject.org/files/ENCFF544GHE/@@download/ENCFF544GHE.bam hg19 released low read depth ENCFF361RFX fastq reads ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF786WVF 2701878632 Michael Snyder, Stanford 21d6990fb4fc38b446364b39d8abedeb SRA:SRR5111717 https://www.encodeproject.org/files/ENCFF361RFX/@@download/ENCFF361RFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released low read depth ENCFF786WVF fastq reads ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF361RFX 2690804417 Michael Snyder, Stanford 23b732ea50cc5e79d0a0c5497bae6497 SRA:SRR5111717 https://www.encodeproject.org/files/ENCFF786WVF/@@download/ENCFF786WVF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released low read depth ENCFF163KYP fastq reads ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 1 100 paired-ended 2 ENCFF479BPN 1471661469 Michael Snyder, Stanford 10583c2d628d3d7b96b78b1f41755ac9 SRA:SRR5111716 https://www.encodeproject.org/files/ENCFF163KYP/@@download/ENCFF163KYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released low read depth ENCFF479BPN fastq reads ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 1 100 paired-ended 1 ENCFF163KYP 1416191367 Michael Snyder, Stanford 7845b9d03c7cca2dcf7f874beac71e0c SRA:SRR5111716 https://www.encodeproject.org/files/ENCFF479BPN/@@download/ENCFF479BPN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released low read depth ENCFF299MOY bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 100 ENCFF163KYP, ENCFF479BPN, ENCFF807MUK 2911570029 ENCODE Processing Pipeline 27220b9b10d7b68c2e7fb04d6fe9963f https://www.encodeproject.org/files/ENCFF299MOY/@@download/ENCFF299MOY.bam hg19 released low read depth ENCFF891VNH bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF361RFX, ENCFF786WVF, ENCFF807MUK 5465801656 ENCODE Processing Pipeline 722b97daacede759fe34a8347c1b7616 https://www.encodeproject.org/files/ENCFF891VNH/@@download/ENCFF891VNH.bam hg19 released low read depth ENCFF972VIQ bigWig signal p-value ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF449NNE, ENCFF891VNH 1230255392 ENCODE Processing Pipeline e69e54497e619b24bf398524156039eb https://www.encodeproject.org/files/ENCFF972VIQ/@@download/ENCFF972VIQ.bigWig hg19 released low read depth ENCFF788UAI bigWig signal p-value ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF299MOY, ENCFF999EQI 885924876 ENCODE Processing Pipeline 1ca9c9750a3fe2c3d908f8139d6c85d4 https://www.encodeproject.org/files/ENCFF788UAI/@@download/ENCFF788UAI.bigWig hg19 released low read depth ENCFF484PEF bigWig signal p-value ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF299MOY, ENCFF449NNE, ENCFF891VNH, ENCFF999EQI 1600727175 ENCODE Processing Pipeline 497d07df54d278e4abd3c589c6a8e1c7 https://www.encodeproject.org/files/ENCFF484PEF/@@download/ENCFF484PEF.bigWig hg19 released low read depth ENCFF807RTB bigWig fold change over control ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF449NNE, ENCFF891VNH 1397259317 ENCODE Processing Pipeline 7f93aaa12d4fb975212fb88e0f358a0b https://www.encodeproject.org/files/ENCFF807RTB/@@download/ENCFF807RTB.bigWig hg19 released low read depth ENCFF419LMR bigWig fold change over control ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF299MOY, ENCFF999EQI 868885065 ENCODE Processing Pipeline 3bac82c003baa7862835625c765198c8 https://www.encodeproject.org/files/ENCFF419LMR/@@download/ENCFF419LMR.bigWig hg19 released low read depth ENCFF471DDR bigWig fold change over control ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF299MOY, ENCFF449NNE, ENCFF891VNH, ENCFF999EQI 2082996877 ENCODE Processing Pipeline af197b8a41658516c3b516ff5dc2f039 https://www.encodeproject.org/files/ENCFF471DDR/@@download/ENCFF471DDR.bigWig hg19 released low read depth ENCFF868YQL bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF299MOY, ENCFF449NNE, ENCFF891VNH, ENCFF999EQI 7206488 ENCODE Processing Pipeline 4f6995946f00e9dabfb488124403af95 https://www.encodeproject.org/files/ENCFF868YQL/@@download/ENCFF868YQL.bed.gz hg19 released low read depth ENCFF003FGN bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF449NNE, ENCFF891VNH 6816934 ENCODE Processing Pipeline ba694247aa21d539c265c37fcb19bfc5 https://www.encodeproject.org/files/ENCFF003FGN/@@download/ENCFF003FGN.bed.gz hg19 released low read depth ENCFF387MBI bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF299MOY, ENCFF999EQI 5731643 ENCODE Processing Pipeline 71b19006db901af012724a20f78b7e59 https://www.encodeproject.org/files/ENCFF387MBI/@@download/ENCFF387MBI.bed.gz hg19 released low read depth ENCFF009QQM bigBed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF003FGN 13307501 ENCODE Processing Pipeline 3fbdfadf6e1fc691d15795b65853cb2c https://www.encodeproject.org/files/ENCFF009QQM/@@download/ENCFF009QQM.bigBed hg19 released low read depth ENCFF212ZMU bigBed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF387MBI 11309067 ENCODE Processing Pipeline d4ec8a3dcadf4b13b86d2a3ccb7fcc86 https://www.encodeproject.org/files/ENCFF212ZMU/@@download/ENCFF212ZMU.bigBed hg19 released low read depth ENCFF853EJT bigBed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF868YQL 13322792 ENCODE Processing Pipeline 93ed50ca9c3747b2720dca585dcc5629 https://www.encodeproject.org/files/ENCFF853EJT/@@download/ENCFF853EJT.bigBed hg19 released low read depth ENCFF850MPH bam unfiltered alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 100 ENCFF163KYP, ENCFF479BPN, ENCFF643CGH 3315604258 ENCODE Processing Pipeline a6d44d09fa3fd92fc7c94ae983342a6d https://www.encodeproject.org/files/ENCFF850MPH/@@download/ENCFF850MPH.bam GRCh38 released low read depth ENCFF534RDA bam unfiltered alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF361RFX, ENCFF643CGH, ENCFF786WVF 6137795818 ENCODE Processing Pipeline 79870fed0c5102a2a256b21f665f0dff https://www.encodeproject.org/files/ENCFF534RDA/@@download/ENCFF534RDA.bam GRCh38 released low read depth ENCFF287PTX bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 100 ENCFF163KYP, ENCFF479BPN, ENCFF643CGH 2916891044 ENCODE Processing Pipeline d061dd61cbd2ccd2d4a33d1e11beac28 https://www.encodeproject.org/files/ENCFF287PTX/@@download/ENCFF287PTX.bam GRCh38 released low read depth ENCFF447ZWG bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF361RFX, ENCFF643CGH, ENCFF786WVF 5476627584 ENCODE Processing Pipeline 6923aac8d47551861d95743cc2c4a7e3 https://www.encodeproject.org/files/ENCFF447ZWG/@@download/ENCFF447ZWG.bam GRCh38 released low read depth ENCFF466JPA bigWig signal p-value ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF190EPQ, ENCFF447ZWG 1362338726 ENCODE Processing Pipeline d6b69243b07226d9e30929d665413f25 https://www.encodeproject.org/files/ENCFF466JPA/@@download/ENCFF466JPA.bigWig GRCh38 released low read depth ENCFF439JRZ bigWig signal p-value ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF287PTX, ENCFF950AXC 852799676 ENCODE Processing Pipeline 0a2437c75a598af1f3fc1df17497e44e https://www.encodeproject.org/files/ENCFF439JRZ/@@download/ENCFF439JRZ.bigWig GRCh38 released low read depth ENCFF961RUG bigWig signal p-value ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF190EPQ, ENCFF287PTX, ENCFF447ZWG, ENCFF950AXC 1995007800 ENCODE Processing Pipeline 2c4c49524108fe5b408af44653953713 https://www.encodeproject.org/files/ENCFF961RUG/@@download/ENCFF961RUG.bigWig GRCh38 released low read depth ENCFF157NZZ bigWig fold change over control ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF190EPQ, ENCFF447ZWG 1389218914 ENCODE Processing Pipeline 6bf2e33bcb8906897836621747787cca https://www.encodeproject.org/files/ENCFF157NZZ/@@download/ENCFF157NZZ.bigWig GRCh38 released low read depth ENCFF498ZYI bigWig fold change over control ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF287PTX, ENCFF950AXC 870805845 ENCODE Processing Pipeline b0a6619eb16c15b50266abaea489d46e https://www.encodeproject.org/files/ENCFF498ZYI/@@download/ENCFF498ZYI.bigWig GRCh38 released low read depth ENCFF015EQK bigWig fold change over control ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF190EPQ, ENCFF287PTX, ENCFF447ZWG, ENCFF950AXC 2085579801 ENCODE Processing Pipeline 5d014cf82de2fb68f769ae3981f8e4c0 https://www.encodeproject.org/files/ENCFF015EQK/@@download/ENCFF015EQK.bigWig GRCh38 released low read depth ENCFF046DYH bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF287PTX, ENCFF950AXC 5596022 ENCODE Processing Pipeline fabf0681efc330d8dd5e694168186c9b https://www.encodeproject.org/files/ENCFF046DYH/@@download/ENCFF046DYH.bed.gz GRCh38 released low read depth ENCFF108RSB bigBed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 ENCFF046DYH 11295160 ENCODE Processing Pipeline eaac76017e1a3200fb1524a9237a71c3 https://www.encodeproject.org/files/ENCFF108RSB/@@download/ENCFF108RSB.bigBed GRCh38 released low read depth ENCFF543DUQ bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF190EPQ, ENCFF287PTX, ENCFF447ZWG, ENCFF950AXC 7186178 ENCODE Processing Pipeline d11651de3671cdf87d62fae4d7b4112b https://www.encodeproject.org/files/ENCFF543DUQ/@@download/ENCFF543DUQ.bed.gz GRCh38 released low read depth ENCFF278IYV bigBed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF543DUQ 13340920 ENCODE Processing Pipeline 798b7f73ba550b699758bc2a2106f4a6 https://www.encodeproject.org/files/ENCFF278IYV/@@download/ENCFF278IYV.bigBed GRCh38 released low read depth ENCFF866ZRE bed narrowPeak conservative idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF046DYH, ENCFF419RSJ, ENCFF543DUQ, ENCFF657PHW 185868 ENCODE Processing Pipeline de440174059cf77de441b0d584a56034 https://www.encodeproject.org/files/ENCFF866ZRE/@@download/ENCFF866ZRE.bed.gz GRCh38 released low read depth ENCFF061SNC bigBed narrowPeak conservative idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF866ZRE 443432 ENCODE Processing Pipeline 59f6e077dbc5bfba40f7d4159026f2d5 https://www.encodeproject.org/files/ENCFF061SNC/@@download/ENCFF061SNC.bigBed GRCh38 released low read depth ENCFF380SYL bed narrowPeak optimal idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF046DYH, ENCFF419RSJ, ENCFF543DUQ, ENCFF657PHW 267883 ENCODE Processing Pipeline ec647fd5940302dca0b9c018a071d1a7 https://www.encodeproject.org/files/ENCFF380SYL/@@download/ENCFF380SYL.bed.gz GRCh38 released low read depth ENCFF657PHW bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF190EPQ, ENCFF447ZWG 6720557 ENCODE Processing Pipeline efad80df239dae45c6178d4d8f1a1297 https://www.encodeproject.org/files/ENCFF657PHW/@@download/ENCFF657PHW.bed.gz GRCh38 released low read depth ENCFF581OFN bigBed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF657PHW 13338408 ENCODE Processing Pipeline 250734fce2c1ac05d07b5841e3804194 https://www.encodeproject.org/files/ENCFF581OFN/@@download/ENCFF581OFN.bigBed GRCh38 released low read depth ENCFF341QJT bigBed narrowPeak optimal idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF380SYL 588162 ENCODE Processing Pipeline 2590516ecd0d57b6d8f25cec2aacb58f https://www.encodeproject.org/files/ENCFF341QJT/@@download/ENCFF341QJT.bigBed GRCh38 released low read depth ENCFF846ZLV bed narrowPeak conservative idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF001TDO, ENCFF003FGN, ENCFF387MBI, ENCFF868YQL 152311 ENCODE Processing Pipeline eecca002a0993d547dd9b737f47fc4d7 https://www.encodeproject.org/files/ENCFF846ZLV/@@download/ENCFF846ZLV.bed.gz hg19 released low read depth ENCFF355ARZ bed narrowPeak optimal idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF001TDO, ENCFF003FGN, ENCFF387MBI, ENCFF868YQL 225454 ENCODE Processing Pipeline 01286b656bb017488d7534dbd33305da https://www.encodeproject.org/files/ENCFF355ARZ/@@download/ENCFF355ARZ.bed.gz hg19 released low read depth ENCFF075BYZ bigBed narrowPeak conservative idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF846ZLV 324047 ENCODE Processing Pipeline 1cab25154228ca488a00e7679a21e1eb https://www.encodeproject.org/files/ENCFF075BYZ/@@download/ENCFF075BYZ.bigBed hg19 released low read depth ENCFF184BEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF355ARZ 425343 ENCODE Processing Pipeline 7617bf0257c772a8b976285db539e986 https://www.encodeproject.org/files/ENCFF184BEJ/@@download/ENCFF184BEJ.bigBed hg19 released low read depth ENCFF375SAG fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF253EIS 2038758996 Michael Snyder, Stanford a4a8b65ff47e8cce2eb3214badc9b017 https://www.encodeproject.org/files/ENCFF375SAG/@@download/ENCFF375SAG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF253EIS fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF375SAG 2058739501 Michael Snyder, Stanford 64acad6ee8a77d7c86b76e460a511dd5 https://www.encodeproject.org/files/ENCFF253EIS/@@download/ENCFF253EIS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF181GHZ fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF421JAE 3067221392 Michael Snyder, Stanford f7d076800fe8d14e83c53023d06f3372 https://www.encodeproject.org/files/ENCFF181GHZ/@@download/ENCFF181GHZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF421JAE fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF181GHZ 3572500908 Michael Snyder, Stanford e9f7510edc25411886ccb63050873dd7 https://www.encodeproject.org/files/ENCFF421JAE/@@download/ENCFF421JAE.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF474JIF bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF807MUK 6580963465 ENCODE Processing Pipeline 4b44c3c27133fc1f688d8fa503faf13c https://www.encodeproject.org/files/ENCFF474JIF/@@download/ENCFF474JIF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF814JNQ bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF643CGH 6588590368 ENCODE Processing Pipeline e76ef85119f546c310e2d41f3ee4c9a3 https://www.encodeproject.org/files/ENCFF814JNQ/@@download/ENCFF814JNQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF628YUZ bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF807MUK 5000664165 ENCODE Processing Pipeline 380d9699d359e99c553707ddd501b36a https://www.encodeproject.org/files/ENCFF628YUZ/@@download/ENCFF628YUZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF993SEE bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF643CGH 5009944284 ENCODE Processing Pipeline 2bc3d8a8bb30f982394035f627db7f90 https://www.encodeproject.org/files/ENCFF993SEE/@@download/ENCFF993SEE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF834KGR bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF993SEE 1914816338 ENCODE Processing Pipeline 40f5918627c5b34df802fad37578e686 https://www.encodeproject.org/files/ENCFF834KGR/@@download/ENCFF834KGR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF956TJM bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF993SEE 1858365465 ENCODE Processing Pipeline 69924bf0733196397041b3e4f551617d https://www.encodeproject.org/files/ENCFF956TJM/@@download/ENCFF956TJM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF334WDB bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 1831342859 ENCODE Processing Pipeline ca14f5d8dcecfdcaddb55bc3a474e061 https://www.encodeproject.org/files/ENCFF334WDB/@@download/ENCFF334WDB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF227JUZ bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 1915000561 ENCODE Processing Pipeline 06144be8dd66bdfd089dbf95e57017cb https://www.encodeproject.org/files/ENCFF227JUZ/@@download/ENCFF227JUZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF214BGG bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF222SAV 11297759 ENCODE Processing Pipeline af9b7087552ec3fe85d77c8be7ef517b https://www.encodeproject.org/files/ENCFF214BGG/@@download/ENCFF214BGG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF222SAV bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 6730092 ENCODE Processing Pipeline 1f32b4b191ac76066f3a6217e6ed7df4 https://www.encodeproject.org/files/ENCFF222SAV/@@download/ENCFF222SAV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF308STS fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 1 ENCFF312YAG 2724184530 Michael Snyder, Stanford 56c04ef39d0a619759a5b8e094866150 https://www.encodeproject.org/files/ENCFF308STS/@@download/ENCFF308STS.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF312YAG fastq reads ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 2 ENCFF308STS 2955286650 Michael Snyder, Stanford 99862e48bf5193c3cab6e2fa306ee0c3 https://www.encodeproject.org/files/ENCFF312YAG/@@download/ENCFF312YAG.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF801CAV bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF643CGH 5515988732 ENCODE Processing Pipeline ea9bc0914043093e16daded086ee225e https://www.encodeproject.org/files/ENCFF801CAV/@@download/ENCFF801CAV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF580MYI bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF807MUK 4480170587 ENCODE Processing Pipeline 58f243eb55a109cd8bf6f1dc1a772edf https://www.encodeproject.org/files/ENCFF580MYI/@@download/ENCFF580MYI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF460ZUI bam unfiltered alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF807MUK 5509648158 ENCODE Processing Pipeline 9071cbf4f40f4fb0e709581fec023d8f https://www.encodeproject.org/files/ENCFF460ZUI/@@download/ENCFF460ZUI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF717ZWZ bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF643CGH 4486967653 ENCODE Processing Pipeline bb2cad33d73053a9a27ef52b4315a8b4 https://www.encodeproject.org/files/ENCFF717ZWZ/@@download/ENCFF717ZWZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF049NLE bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF815CIT 11803805 ENCODE Processing Pipeline 50ce4435108cdfa3fba0d7ec8e760940 https://www.encodeproject.org/files/ENCFF049NLE/@@download/ENCFF049NLE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF085HIP bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF580MYI, ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 2425103234 ENCODE Processing Pipeline 0fa9578f363fbcd1223ad780f104a3a4 https://www.encodeproject.org/files/ENCFF085HIP/@@download/ENCFF085HIP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF034KQB bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF543PLI 11633404 ENCODE Processing Pipeline 72f402dbc2cc3eca1dbc8e20fa5472f6 https://www.encodeproject.org/files/ENCFF034KQB/@@download/ENCFF034KQB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF867KAO bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF059KWF 11784306 ENCODE Processing Pipeline e3439e09fb1d255999cd84eccc4a9a0a https://www.encodeproject.org/files/ENCFF867KAO/@@download/ENCFF867KAO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF963TPR bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF322NTO, ENCFF717ZWZ 1017491585 ENCODE Processing Pipeline c3a6f1c898d3a2338100ee519127180c https://www.encodeproject.org/files/ENCFF963TPR/@@download/ENCFF963TPR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF232CUP bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF322NTO, ENCFF717ZWZ 1366867570 ENCODE Processing Pipeline dbb5bba2542c59918fe9eb5b97f524b4 https://www.encodeproject.org/files/ENCFF232CUP/@@download/ENCFF232CUP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF543PLI bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF322NTO, ENCFF666ATR, ENCFF717ZWZ, ENCFF993SEE 7189047 ENCODE Processing Pipeline 57f8d4649601a68f7081e6f85c927afc https://www.encodeproject.org/files/ENCFF543PLI/@@download/ENCFF543PLI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF777DVJ bed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF419RSJ, ENCFF543PLI, ENCFF815CIT, ENCFF865INZ 4883 ENCODE Processing Pipeline c7cc25ad5d0a9958ba90a0a60d9eda4d https://www.encodeproject.org/files/ENCFF777DVJ/@@download/ENCFF777DVJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF828LKL bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF133NZE 11614881 ENCODE Processing Pipeline eb27d75e371da5e28054284b285e880a https://www.encodeproject.org/files/ENCFF828LKL/@@download/ENCFF828LKL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF791ZIC bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF322NTO, ENCFF666ATR, ENCFF717ZWZ, ENCFF993SEE 2469444853 ENCODE Processing Pipeline 68b7131789de344134deb23c160cafa1 https://www.encodeproject.org/files/ENCFF791ZIC/@@download/ENCFF791ZIC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF778TKQ bed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF419RSJ, ENCFF543PLI, ENCFF815CIT, ENCFF865INZ 3271 ENCODE Processing Pipeline 7b135e3121fe4d28784e8df1f82bd18c https://www.encodeproject.org/files/ENCFF778TKQ/@@download/ENCFF778TKQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF368DYQ bigBed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF778TKQ 81853 ENCODE Processing Pipeline 658513ad9b85133f5521a903d0c876ce https://www.encodeproject.org/files/ENCFF368DYQ/@@download/ENCFF368DYQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF478OOS bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF322NTO, ENCFF666ATR, ENCFF717ZWZ, ENCFF993SEE 2331708144 ENCODE Processing Pipeline e76aa6921a032babacabfc3f6b7d7266 https://www.encodeproject.org/files/ENCFF478OOS/@@download/ENCFF478OOS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF836EKZ bigBed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF865INZ 11292946 ENCODE Processing Pipeline b9fb0bfb5e096bc72178e7e743ce7eb4 https://www.encodeproject.org/files/ENCFF836EKZ/@@download/ENCFF836EKZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF065QOM bed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF001TDO, ENCFF059KWF, ENCFF133NZE, ENCFF222SAV 4790 ENCODE Processing Pipeline 233897215cc75699bd30006f3cd5c2d2 https://www.encodeproject.org/files/ENCFF065QOM/@@download/ENCFF065QOM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF907OBQ bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF580MYI, ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 2242313095 ENCODE Processing Pipeline 9b09976326e38cea4314bb69bc9c5f09 https://www.encodeproject.org/files/ENCFF907OBQ/@@download/ENCFF907OBQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF547XTZ bigWig fold change over control ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF580MYI, ENCFF592WAL 1322901311 ENCODE Processing Pipeline 1ea455242d74da1e0c85649888f23bd6 https://www.encodeproject.org/files/ENCFF547XTZ/@@download/ENCFF547XTZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF865INZ bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF993SEE 6769604 ENCODE Processing Pipeline 56a7b7711f0bc9730911a810aa0c5b1d https://www.encodeproject.org/files/ENCFF865INZ/@@download/ENCFF865INZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF463ROM bigWig signal p-value ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF580MYI, ENCFF592WAL 1340697750 ENCODE Processing Pipeline 5484d756d6fdafe8f4e4cafb73199c90 https://www.encodeproject.org/files/ENCFF463ROM/@@download/ENCFF463ROM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF815CIT bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF322NTO, ENCFF717ZWZ 5612845 ENCODE Processing Pipeline c3e02ddc6f15652b1fbd3fd506ea8807 https://www.encodeproject.org/files/ENCFF815CIT/@@download/ENCFF815CIT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF059KWF bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 ENCFF580MYI, ENCFF592WAL 5612210 ENCODE Processing Pipeline d7e2ec297d8b73942dc863fe0804717c https://www.encodeproject.org/files/ENCFF059KWF/@@download/ENCFF059KWF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF191OAE bigBed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF777DVJ 79844 ENCODE Processing Pipeline 41d68323e35ac05e7febe2618a0c77b9 https://www.encodeproject.org/files/ENCFF191OAE/@@download/ENCFF191OAE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF133NZE bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF580MYI, ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 7183220 ENCODE Processing Pipeline da69d67f311f1c8a8a7fea3c71a501a0 https://www.encodeproject.org/files/ENCFF133NZE/@@download/ENCFF133NZE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF744AFG bed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF001TDO, ENCFF059KWF, ENCFF133NZE, ENCFF222SAV 3056 ENCODE Processing Pipeline 39e520392695c8e9b4d7c7e3b7870fda https://www.encodeproject.org/files/ENCFF744AFG/@@download/ENCFF744AFG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF335PYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF744AFG 80025 ENCODE Processing Pipeline 5f5d488171537efaaff1b43d52687fdd https://www.encodeproject.org/files/ENCFF335PYJ/@@download/ENCFF335PYJ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF754CST bigBed narrowPeak optimal idr thresholded peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF065QOM 60588 ENCODE Processing Pipeline b3c4297ffacce288e835593146f88b6b https://www.encodeproject.org/files/ENCFF754CST/@@download/ENCFF754CST.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF862QKP bam unfiltered alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 100 ENCFF228EWB, ENCFF807MUK, ENCFF922VLO 5920611211 ENCODE Processing Pipeline 8d94a9a4325d44322e2840162ee12d8a https://www.encodeproject.org/files/ENCFF862QKP/@@download/ENCFF862QKP.bam hg19 released ENCFF290RPU bam unfiltered alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF654EXQ, ENCFF807MUK, ENCFF996BVX 6707038731 ENCODE Processing Pipeline 16ab318f7f310295230270aaa37ac5bd https://www.encodeproject.org/files/ENCFF290RPU/@@download/ENCFF290RPU.bam hg19 released ENCFF228EWB fastq reads ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 1 100 paired-ended 2 ENCFF922VLO 2769130323 Michael Snyder, Stanford 90b297d5d31e912c5be6ad75bdfde918 SRA:SRR5112429 https://www.encodeproject.org/files/ENCFF228EWB/@@download/ENCFF228EWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF996BVX fastq reads ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF654EXQ 3098450438 Michael Snyder, Stanford 422a745d708ebc4dbc44dfa028ce8833 SRA:SRR5112428 https://www.encodeproject.org/files/ENCFF996BVX/@@download/ENCFF996BVX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF654EXQ fastq reads ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF996BVX 3128788707 Michael Snyder, Stanford 29b335c50a868b6736646b9567558772 SRA:SRR5112428 https://www.encodeproject.org/files/ENCFF654EXQ/@@download/ENCFF654EXQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF922VLO fastq reads ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 1 100 paired-ended 1 ENCFF228EWB 2775877539 Michael Snyder, Stanford 8f937084a277f19ee54e8d117e467219 SRA:SRR5112429 https://www.encodeproject.org/files/ENCFF922VLO/@@download/ENCFF922VLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF770FOE bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF654EXQ, ENCFF807MUK, ENCFF996BVX 5811273006 ENCODE Processing Pipeline c6cf2eec682891f43f26e4248cd0ae0c https://www.encodeproject.org/files/ENCFF770FOE/@@download/ENCFF770FOE.bam hg19 released ENCFF978JTT bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 100 ENCFF228EWB, ENCFF807MUK, ENCFF922VLO 5117185192 ENCODE Processing Pipeline 668425614033a147a739237807434f83 https://www.encodeproject.org/files/ENCFF978JTT/@@download/ENCFF978JTT.bam hg19 released ENCFF884ZQD bigWig signal p-value ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF770FOE 1412164025 ENCODE Processing Pipeline 469b3bd1e1f0019bf92343d2a3b9697a https://www.encodeproject.org/files/ENCFF884ZQD/@@download/ENCFF884ZQD.bigWig hg19 released ENCFF355VNJ bigWig signal p-value ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF581ZJL, ENCFF978JTT 1220385397 ENCODE Processing Pipeline 3b0e70daf39feab6bd229dac428f4a1a https://www.encodeproject.org/files/ENCFF355VNJ/@@download/ENCFF355VNJ.bigWig hg19 released ENCFF767XMJ bigWig fold change over control ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF770FOE 1405092969 ENCODE Processing Pipeline f749741c688e0cabe8ea504f5658feb4 https://www.encodeproject.org/files/ENCFF767XMJ/@@download/ENCFF767XMJ.bigWig hg19 released ENCFF977KOS bigWig fold change over control ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF581ZJL, ENCFF978JTT 1372434779 ENCODE Processing Pipeline 9e83c1f53782b330a4d58719a762f874 https://www.encodeproject.org/files/ENCFF977KOS/@@download/ENCFF977KOS.bigWig hg19 released ENCFF145DUR bam unfiltered alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF643CGH, ENCFF654EXQ, ENCFF996BVX 6715975989 ENCODE Processing Pipeline 462c1262d375ab26ee4c6b0b576ea0ee https://www.encodeproject.org/files/ENCFF145DUR/@@download/ENCFF145DUR.bam GRCh38 released ENCFF642SQY bam unfiltered alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 100 ENCFF228EWB, ENCFF643CGH, ENCFF922VLO 5929067053 ENCODE Processing Pipeline 753a67aa6850e40a22cf766285ea05a2 https://www.encodeproject.org/files/ENCFF642SQY/@@download/ENCFF642SQY.bam GRCh38 released ENCFF860IRS bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 100 ENCFF228EWB, ENCFF643CGH, ENCFF922VLO 5119317624 ENCODE Processing Pipeline dbb5326354f18a1f5c536392292fe3d3 https://www.encodeproject.org/files/ENCFF860IRS/@@download/ENCFF860IRS.bam GRCh38 released ENCFF263MBV bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF643CGH, ENCFF654EXQ, ENCFF996BVX 5814595941 ENCODE Processing Pipeline e08da8ba0ea59d85f32262d7b974d5e1 https://www.encodeproject.org/files/ENCFF263MBV/@@download/ENCFF263MBV.bam GRCh38 released ENCFF144QDR bigWig signal p-value ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF263MBV 1419585233 ENCODE Processing Pipeline 78ae24c1c721cc0e4fb72f0e3affe53c https://www.encodeproject.org/files/ENCFF144QDR/@@download/ENCFF144QDR.bigWig GRCh38 released ENCFF506PZB bigWig signal p-value ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF860IRS, ENCFF910IKB 1253551679 ENCODE Processing Pipeline 9de04a77d9cfc417a42727f0e449d4d0 https://www.encodeproject.org/files/ENCFF506PZB/@@download/ENCFF506PZB.bigWig GRCh38 released ENCFF518HIX bigWig signal p-value ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF227IZS, ENCFF263MBV, ENCFF860IRS, ENCFF910IKB 1923990443 ENCODE Processing Pipeline 4a96949117897a42a9e27434d02623b5 https://www.encodeproject.org/files/ENCFF518HIX/@@download/ENCFF518HIX.bigWig GRCh38 released ENCFF280EKZ bigWig fold change over control ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF263MBV 1405596579 ENCODE Processing Pipeline 9eff2d7b02c05754ebe2c30f5978c867 https://www.encodeproject.org/files/ENCFF280EKZ/@@download/ENCFF280EKZ.bigWig GRCh38 released ENCFF804NKW bigWig fold change over control ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF860IRS, ENCFF910IKB 1385602193 ENCODE Processing Pipeline 502b8dd661e5821ac87df26fa4d1185b https://www.encodeproject.org/files/ENCFF804NKW/@@download/ENCFF804NKW.bigWig GRCh38 released ENCFF098QMC bigWig fold change over control ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF227IZS, ENCFF263MBV, ENCFF860IRS, ENCFF910IKB 2383816812 ENCODE Processing Pipeline b870fe01c1082bd89e9bf4de05f66306 https://www.encodeproject.org/files/ENCFF098QMC/@@download/ENCFF098QMC.bigWig GRCh38 released ENCFF698PFW bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF263MBV 6816846 ENCODE Processing Pipeline 9d9fb9b2a61fa31b2115892e3a0973a7 https://www.encodeproject.org/files/ENCFF698PFW/@@download/ENCFF698PFW.bed.gz GRCh38 released ENCFF350AET bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF860IRS, ENCFF910IKB 6664929 ENCODE Processing Pipeline 0abc58eb407274509ee0756648997027 https://www.encodeproject.org/files/ENCFF350AET/@@download/ENCFF350AET.bed.gz GRCh38 released ENCFF617JTC bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF227IZS, ENCFF263MBV, ENCFF860IRS, ENCFF910IKB 7267852 ENCODE Processing Pipeline ea204ba38af0a06568afd393be48c473 https://www.encodeproject.org/files/ENCFF617JTC/@@download/ENCFF617JTC.bed.gz GRCh38 released ENCFF344XNC bigBed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF698PFW 13143502 ENCODE Processing Pipeline 0995f3ea424be98f4e51f63eaca7ee76 https://www.encodeproject.org/files/ENCFF344XNC/@@download/ENCFF344XNC.bigBed GRCh38 released ENCFF553XXQ bigBed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF350AET 13377959 ENCODE Processing Pipeline 075ea91f667ae28a6f30c4c098b4252e https://www.encodeproject.org/files/ENCFF553XXQ/@@download/ENCFF553XXQ.bigBed GRCh38 released ENCFF289JBE bigBed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF617JTC 13190965 ENCODE Processing Pipeline 6c660d61cfc81789eeffb43f007f8c11 https://www.encodeproject.org/files/ENCFF289JBE/@@download/ENCFF289JBE.bigBed GRCh38 released ENCFF937LGS bed narrowPeak conservative idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF350AET, ENCFF419RSJ, ENCFF617JTC, ENCFF698PFW 154306 ENCODE Processing Pipeline 10e41f35487806314be10a7bc33c89f1 https://www.encodeproject.org/files/ENCFF937LGS/@@download/ENCFF937LGS.bed.gz GRCh38 released ENCFF522JFX bigBed narrowPeak conservative idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF937LGS 375897 ENCODE Processing Pipeline 3462e589efe0bf47d4bc762bc5b70450 https://www.encodeproject.org/files/ENCFF522JFX/@@download/ENCFF522JFX.bigBed GRCh38 released ENCFF909RMQ bed narrowPeak optimal idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF350AET, ENCFF419RSJ, ENCFF617JTC, ENCFF698PFW 240056 ENCODE Processing Pipeline 15bf101d68f40346d3faec87fbca4aa1 https://www.encodeproject.org/files/ENCFF909RMQ/@@download/ENCFF909RMQ.bed.gz GRCh38 released ENCFF492SEP bigBed narrowPeak optimal idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF909RMQ 526394 ENCODE Processing Pipeline 40662dc34c35ade8acec9fc58ae6a8a2 https://www.encodeproject.org/files/ENCFF492SEP/@@download/ENCFF492SEP.bigBed GRCh38 released ENCFF305FZG bigWig fold change over control ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF770FOE, ENCFF978JTT 2380356512 ENCODE Processing Pipeline 693498957e6b866b4039a443891e033a https://www.encodeproject.org/files/ENCFF305FZG/@@download/ENCFF305FZG.bigWig hg19 released ENCFF922XNG bigWig signal p-value ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF770FOE, ENCFF978JTT 1821139851 ENCODE Processing Pipeline 67267b74a7b8c5c3c81af3af2255b988 https://www.encodeproject.org/files/ENCFF922XNG/@@download/ENCFF922XNG.bigWig hg19 released ENCFF654INX bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF581ZJL, ENCFF978JTT 6632005 ENCODE Processing Pipeline 91abe29c9a4aed1614168c0945be1519 https://www.encodeproject.org/files/ENCFF654INX/@@download/ENCFF654INX.bed.gz hg19 released ENCFF361XVV bigBed narrowPeak conservative idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF235UZG 371801 ENCODE Processing Pipeline c0d75c1c057e40969e6f77536b305414 https://www.encodeproject.org/files/ENCFF361XVV/@@download/ENCFF361XVV.bigBed hg19 released ENCFF261XPP bed narrowPeak optimal idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF001TDO, ENCFF506ZBZ, ENCFF612BYB, ENCFF654INX 242184 ENCODE Processing Pipeline ac65d03826f780526495ec873aa0d673 https://www.encodeproject.org/files/ENCFF261XPP/@@download/ENCFF261XPP.bed.gz hg19 released ENCFF519FSN bigBed narrowPeak optimal idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF261XPP 526439 ENCODE Processing Pipeline 3107dd2f15376c523fd4b809d4213a58 https://www.encodeproject.org/files/ENCFF519FSN/@@download/ENCFF519FSN.bigBed hg19 released ENCFF506ZBZ bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF770FOE 6818155 ENCODE Processing Pipeline 608eaff7ddd2e050aa1865b7cbf368e2 https://www.encodeproject.org/files/ENCFF506ZBZ/@@download/ENCFF506ZBZ.bed.gz hg19 released ENCFF612BYB bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF770FOE, ENCFF978JTT 7262870 ENCODE Processing Pipeline 09fd9a63d684e03969815904c0fe1c20 https://www.encodeproject.org/files/ENCFF612BYB/@@download/ENCFF612BYB.bed.gz hg19 released ENCFF007OJR bigBed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 ENCFF654INX 13369187 ENCODE Processing Pipeline 2ef74a51099b516baf2a1002de9726b5 https://www.encodeproject.org/files/ENCFF007OJR/@@download/ENCFF007OJR.bigBed hg19 released ENCFF088QFX bigBed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF612BYB 13174418 ENCODE Processing Pipeline 9f72beb164e21ff2b0383d72986ca713 https://www.encodeproject.org/files/ENCFF088QFX/@@download/ENCFF088QFX.bigBed hg19 released ENCFF235UZG bed narrowPeak conservative idr thresholded peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2, 3 ENCFF001TDO, ENCFF506ZBZ, ENCFF612BYB, ENCFF654INX 153665 ENCODE Processing Pipeline 457f23bc42d399c1f2eeccd3a189a518 https://www.encodeproject.org/files/ENCFF235UZG/@@download/ENCFF235UZG.bed.gz hg19 released ENCFF982TZK bigBed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF506ZBZ 13128719 ENCODE Processing Pipeline e62274c1ba9f092361bab27884dca700 https://www.encodeproject.org/files/ENCFF982TZK/@@download/ENCFF982TZK.bigBed hg19 released ENCFF000PTR bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PUD 1261831397 Richard Myers, HAIB 3ae697bf89747cc6012bc25337100747 https://www.encodeproject.org/files/ENCFF000PTR/@@download/ENCFF000PTR.bam hg19 archived low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000PTS bigBed broadPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UIM 430246 Richard Myers, HAIB 0b6736a5c26220aca5ba2a9399bd8de6 https://www.encodeproject.org/files/ENCFF000PTS/@@download/ENCFF000PTS.bigBed hg19 archived low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000PTT bigBed broadPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UIN 172838 Richard Myers, HAIB af8dce0bc83d3746644e0d308adb457c https://www.encodeproject.org/files/ENCFF000PTT/@@download/ENCFF000PTT.bigBed hg19 archived low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000PTW bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PUO 2854102605 Richard Myers, HAIB 4ff9e7f88cba8b113d622703ff047edd https://www.encodeproject.org/files/ENCFF000PTW/@@download/ENCFF000PTW.bam hg19 archived low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000PTX bigWig raw signal ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 161257878 Richard Myers, HAIB d7966666a47fa4772b1955dfba559c96 https://www.encodeproject.org/files/ENCFF000PTX/@@download/ENCFF000PTX.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000PTY bigWig raw signal ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 292845720 Richard Myers, HAIB c6b21ce9a7c6608cc3be252cc4a0f508 https://www.encodeproject.org/files/ENCFF000PTY/@@download/ENCFF000PTY.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000PUD fastq reads ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1341270925 Richard Myers, HAIB 24f36725100807d93dae936c4516afc4 https://www.encodeproject.org/files/ENCFF000PUD/@@download/ENCFF000PUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000PUO fastq reads ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2949869483 Richard Myers, HAIB 8a2b4752aa3ad78fa88f20c381096b3e https://www.encodeproject.org/files/ENCFF000PUO/@@download/ENCFF000PUO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001UIM bed broadPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 233961 Richard Myers, HAIB b70cd8afa1c02c07f2638d207ca890c3 https://www.encodeproject.org/files/ENCFF001UIM/@@download/ENCFF001UIM.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF001UIN bed broadPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 74994 Richard Myers, HAIB 032c100983c26c80f0da3b377b52a077 https://www.encodeproject.org/files/ENCFF001UIN/@@download/ENCFF001UIN.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF027UBI bam unfiltered alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUD, ENCFF643CGH 1351598728 ENCODE Processing Pipeline d8d7600c82f61eea76f9121fa39f8465 https://www.encodeproject.org/files/ENCFF027UBI/@@download/ENCFF027UBI.bam GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF704CFG bam unfiltered alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUO, ENCFF643CGH 3083905875 ENCODE Processing Pipeline d0fff8ae1e7960c876d3490f40a5b0f6 https://www.encodeproject.org/files/ENCFF704CFG/@@download/ENCFF704CFG.bam GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF058RXV bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUD, ENCFF643CGH 960102167 ENCODE Processing Pipeline 59f1a0d6b8cf68a5b420058e8ee3c57d https://www.encodeproject.org/files/ENCFF058RXV/@@download/ENCFF058RXV.bam GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF372SGD bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUO, ENCFF643CGH 2007975392 ENCODE Processing Pipeline e738d0443104a9c32c945b61aee4c9b4 https://www.encodeproject.org/files/ENCFF372SGD/@@download/ENCFF372SGD.bam GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF321HSZ bam unfiltered alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUD, ENCFF807MUK 1348066321 ENCODE Processing Pipeline 984f394cc0584e5f0e00048b8d68e7ac https://www.encodeproject.org/files/ENCFF321HSZ/@@download/ENCFF321HSZ.bam hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF027GJA bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUD, ENCFF807MUK 960290199 ENCODE Processing Pipeline 89fd5f4b7dc18f2dceb31934b30a8aef https://www.encodeproject.org/files/ENCFF027GJA/@@download/ENCFF027GJA.bam hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF296RQD bam unfiltered alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUO, ENCFF807MUK 3071655439 ENCODE Processing Pipeline 4bb3e3b3566c8f97ce9706986d771c8e https://www.encodeproject.org/files/ENCFF296RQD/@@download/ENCFF296RQD.bam hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF656QRB bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUO, ENCFF807MUK 2008057553 ENCODE Processing Pipeline 466d6fd64590e1facd80e73bd440312a https://www.encodeproject.org/files/ENCFF656QRB/@@download/ENCFF656QRB.bam hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF251TEL bigWig fold change over control ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF656QRB, ENCFF880DIZ 566000333 ENCODE Processing Pipeline 3d1b52df530b710a90d7625f2d0678bd https://www.encodeproject.org/files/ENCFF251TEL/@@download/ENCFF251TEL.bigWig hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF427PNP bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF027GJA, ENCFF880DIZ 5377648 ENCODE Processing Pipeline 8ead2387144ed550b5e379831425b0f0 https://www.encodeproject.org/files/ENCFF427PNP/@@download/ENCFF427PNP.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF603MCO bed narrowPeak optimal idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF152FPH, ENCFF427PNP, ENCFF955CMQ 250253 ENCODE Processing Pipeline bd65a9b594a044fa6e72d0baca077e59 https://www.encodeproject.org/files/ENCFF603MCO/@@download/ENCFF603MCO.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF152FPH bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF656QRB, ENCFF880DIZ 4040861 ENCODE Processing Pipeline 0cae1d7e990f72777ddc0e9fab1cd9a6 https://www.encodeproject.org/files/ENCFF152FPH/@@download/ENCFF152FPH.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF376FYP bigBed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF427PNP 13238191 ENCODE Processing Pipeline 8a76cfbcc2e6229430e4c31c944433b7 https://www.encodeproject.org/files/ENCFF376FYP/@@download/ENCFF376FYP.bigBed hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF478GJC bigBed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF955CMQ 11233636 ENCODE Processing Pipeline 7ae01c26df18c28fa4efaa92e0ad2c5d https://www.encodeproject.org/files/ENCFF478GJC/@@download/ENCFF478GJC.bigBed hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF975OED bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF603MCO 515947 ENCODE Processing Pipeline c9c3a976e43c317a3d4a1484db2e5e4f https://www.encodeproject.org/files/ENCFF975OED/@@download/ENCFF975OED.bigBed hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF515RRQ bigWig signal p-value ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF027GJA, ENCFF880DIZ 487999195 ENCODE Processing Pipeline efd8e3f3c9506cb93dce9dcec91daa45 https://www.encodeproject.org/files/ENCFF515RRQ/@@download/ENCFF515RRQ.bigWig hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF624YMF bigWig fold change over control ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF027GJA, ENCFF880DIZ 382109758 ENCODE Processing Pipeline 2d6a5c6227d175121e85d5ab7c1436e3 https://www.encodeproject.org/files/ENCFF624YMF/@@download/ENCFF624YMF.bigWig hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF874APL bigWig fold change over control ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF027GJA, ENCFF656QRB, ENCFF880DIZ 821512370 ENCODE Processing Pipeline ce31b90dc1a989797394ccbd25e73c9e https://www.encodeproject.org/files/ENCFF874APL/@@download/ENCFF874APL.bigWig hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF473PQT bigBed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF152FPH 10769930 ENCODE Processing Pipeline 1d5804ee20afb045ef7e1cec0d570093 https://www.encodeproject.org/files/ENCFF473PQT/@@download/ENCFF473PQT.bigBed hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF633YMF bigWig signal p-value ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF027GJA, ENCFF656QRB, ENCFF880DIZ 508823325 ENCODE Processing Pipeline 5c3a36d9c6cc678ffe3e659ee4f0ddf3 https://www.encodeproject.org/files/ENCFF633YMF/@@download/ENCFF633YMF.bigWig hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF939MDW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF128UOK 248587 ENCODE Processing Pipeline c497c7820cce5a19ffb1e54d482c97d3 https://www.encodeproject.org/files/ENCFF939MDW/@@download/ENCFF939MDW.bigBed hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF472OID bigWig signal p-value ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF656QRB, ENCFF880DIZ 494952535 ENCODE Processing Pipeline 1dfa92d412f8844479f37434747d93b9 https://www.encodeproject.org/files/ENCFF472OID/@@download/ENCFF472OID.bigWig hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF955CMQ bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF027GJA, ENCFF656QRB, ENCFF880DIZ 5556606 ENCODE Processing Pipeline 5fe02a0847524729513ae45908033a6e https://www.encodeproject.org/files/ENCFF955CMQ/@@download/ENCFF955CMQ.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF128UOK bed narrowPeak conservative idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF152FPH, ENCFF427PNP, ENCFF955CMQ 115362 ENCODE Processing Pipeline fc1dabcad93b233f94a8f7cb765f4135 https://www.encodeproject.org/files/ENCFF128UOK/@@download/ENCFF128UOK.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF342DOS bigWig signal p-value ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF058RXV, ENCFF895MWF 455823702 ENCODE Processing Pipeline 0666ba5c53ebcee9a92ef43a0c219e83 https://www.encodeproject.org/files/ENCFF342DOS/@@download/ENCFF342DOS.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF701VWM bigWig signal p-value ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF372SGD, ENCFF895MWF 492956483 ENCODE Processing Pipeline d3ff899bcbf99e4f50d63aaef4933104 https://www.encodeproject.org/files/ENCFF701VWM/@@download/ENCFF701VWM.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF055CCJ bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF372SGD, ENCFF895MWF 4016601 ENCODE Processing Pipeline 65dd783e67a5e408157dccbb15957c17 https://www.encodeproject.org/files/ENCFF055CCJ/@@download/ENCFF055CCJ.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF262UHE bigWig fold change over control ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF058RXV, ENCFF895MWF 389270645 ENCODE Processing Pipeline a491eeb4bc1b41a6041b5c51cb3ee7fd https://www.encodeproject.org/files/ENCFF262UHE/@@download/ENCFF262UHE.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF739FQY bigWig fold change over control ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF372SGD, ENCFF895MWF 560460722 ENCODE Processing Pipeline 4351b7246c696f7ac73ee46a96d265e2 https://www.encodeproject.org/files/ENCFF739FQY/@@download/ENCFF739FQY.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF900WML bigWig signal p-value ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF058RXV, ENCFF372SGD, ENCFF895MWF 505142939 ENCODE Processing Pipeline 80d1032f60ca647c2c5c21eee775f6fc https://www.encodeproject.org/files/ENCFF900WML/@@download/ENCFF900WML.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF987PBN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF839LPE 514962 ENCODE Processing Pipeline da87943c2049503c65f93fe440795d74 https://www.encodeproject.org/files/ENCFF987PBN/@@download/ENCFF987PBN.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF496DGW bigWig fold change over control ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF058RXV, ENCFF372SGD, ENCFF895MWF 806775024 ENCODE Processing Pipeline ba18e780b613fbcdddc2f32438522cbf https://www.encodeproject.org/files/ENCFF496DGW/@@download/ENCFF496DGW.bigWig GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF655MJA bed narrowPeak conservative idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF043DRH, ENCFF055CCJ, ENCFF080YLK, ENCFF419RSJ 117453 ENCODE Processing Pipeline ac9c4ab3ac9a0c6acc5627f847100fa0 https://www.encodeproject.org/files/ENCFF655MJA/@@download/ENCFF655MJA.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF043DRH bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF058RXV, ENCFF895MWF 5381224 ENCODE Processing Pipeline 2cb9222770b96c9c7bac32f3bca9178b https://www.encodeproject.org/files/ENCFF043DRH/@@download/ENCFF043DRH.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF428IKJ bigBed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF043DRH 13242669 ENCODE Processing Pipeline a63a1aa7b25cea88896bb6258f40ff9d https://www.encodeproject.org/files/ENCFF428IKJ/@@download/ENCFF428IKJ.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF181ICQ bigBed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF055CCJ 10739219 ENCODE Processing Pipeline 2b8123d12525d64b8a826a3b9bf2296d https://www.encodeproject.org/files/ENCFF181ICQ/@@download/ENCFF181ICQ.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF456YXP bigBed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF080YLK 11245087 ENCODE Processing Pipeline adde947d81e907ac31d6a14cb402d1d4 https://www.encodeproject.org/files/ENCFF456YXP/@@download/ENCFF456YXP.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF927AZD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF655MJA 252154 ENCODE Processing Pipeline 2a4c971de83a3c5af439913080d0ed17 https://www.encodeproject.org/files/ENCFF927AZD/@@download/ENCFF927AZD.bigBed GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF839LPE bed narrowPeak optimal idr thresholded peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF043DRH, ENCFF055CCJ, ENCFF080YLK, ENCFF419RSJ 250154 ENCODE Processing Pipeline 247a050b172bb5b0394cb4e78ca69a5f https://www.encodeproject.org/files/ENCFF839LPE/@@download/ENCFF839LPE.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF080YLK bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF058RXV, ENCFF372SGD, ENCFF895MWF 5553311 ENCODE Processing Pipeline f3554f2cc96f7d110946adedb2820299 https://www.encodeproject.org/files/ENCFF080YLK/@@download/ENCFF080YLK.bed.gz GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF752NOE fastq reads ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF856HJS 2500480268 Michael Snyder, Stanford 59c1037bc490f0f07e32fb12c7095d23 SRA:SRR5111609 https://www.encodeproject.org/files/ENCFF752NOE/@@download/ENCFF752NOE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF429EZN fastq reads ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF767SIE 2575059748 Michael Snyder, Stanford 135b4e5a78bb9df4ad4ece3704d6233d SRA:SRR5111608 https://www.encodeproject.org/files/ENCFF429EZN/@@download/ENCFF429EZN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF856HJS fastq reads ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF752NOE 2572229791 Michael Snyder, Stanford ead28170a0ae60bba2798325fbf153c9 SRA:SRR5111609 https://www.encodeproject.org/files/ENCFF856HJS/@@download/ENCFF856HJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF767SIE fastq reads ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF429EZN 2649299434 Michael Snyder, Stanford 3cf930c3486469cba8e9d72c2cc7e771 SRA:SRR5111608 https://www.encodeproject.org/files/ENCFF767SIE/@@download/ENCFF767SIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF300UQT bam unfiltered alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF752NOE, ENCFF807MUK, ENCFF856HJS 5603038137 ENCODE Processing Pipeline 6dcebd3eec36ec8354dcc0ddc80d805c https://www.encodeproject.org/files/ENCFF300UQT/@@download/ENCFF300UQT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF731VDC bam unfiltered alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF429EZN, ENCFF767SIE, ENCFF807MUK 5764949439 ENCODE Processing Pipeline b7bacdd12cd53a14d0066f25229cbceb https://www.encodeproject.org/files/ENCFF731VDC/@@download/ENCFF731VDC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF564JVM bam unfiltered alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF752NOE, ENCFF856HJS 5610200352 ENCODE Processing Pipeline fedfebe30eb8786142a95de8eac0c0dd https://www.encodeproject.org/files/ENCFF564JVM/@@download/ENCFF564JVM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF394GPQ bam unfiltered alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF429EZN, ENCFF643CGH, ENCFF767SIE 5773019764 ENCODE Processing Pipeline 6d78a21e69271ea52c1bfcfbe38f89e9 https://www.encodeproject.org/files/ENCFF394GPQ/@@download/ENCFF394GPQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF560UCX bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF752NOE, ENCFF807MUK, ENCFF856HJS 4959514440 ENCODE Processing Pipeline e9868cab7c8985a6ccd06cfa6a56ca9d https://www.encodeproject.org/files/ENCFF560UCX/@@download/ENCFF560UCX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF181SRH bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF429EZN, ENCFF767SIE, ENCFF807MUK 5050560025 ENCODE Processing Pipeline fdc55ed0eaf61eaa70f2fd8597b04004 https://www.encodeproject.org/files/ENCFF181SRH/@@download/ENCFF181SRH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF861MLP bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF752NOE, ENCFF856HJS 4960844143 ENCODE Processing Pipeline 556b6952fa8dd4bb64b138a950bdb74d https://www.encodeproject.org/files/ENCFF861MLP/@@download/ENCFF861MLP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF112YSB bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF429EZN, ENCFF643CGH, ENCFF767SIE 5052306670 ENCODE Processing Pipeline 94475d5d83796bcf9bdd0b864e967261 https://www.encodeproject.org/files/ENCFF112YSB/@@download/ENCFF112YSB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF602LJQ bigWig signal p-value ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF181SRH 1253143404 ENCODE Processing Pipeline e6d03b7474ad8416f6ce69674c8014ef https://www.encodeproject.org/files/ENCFF602LJQ/@@download/ENCFF602LJQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF363IHM bigWig signal p-value ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF560UCX 1304396219 ENCODE Processing Pipeline dfa2e4522b61c6d036c58d03e16f99a2 https://www.encodeproject.org/files/ENCFF363IHM/@@download/ENCFF363IHM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF475OEB bigWig signal p-value ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF181SRH, ENCFF560UCX 1968165240 ENCODE Processing Pipeline b9d1867b94fb9894daa3dcf1c12f57b4 https://www.encodeproject.org/files/ENCFF475OEB/@@download/ENCFF475OEB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF270OIC bigWig fold change over control ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF181SRH 1482459583 ENCODE Processing Pipeline 42bfcd4ef894355c170cfb0781c74e95 https://www.encodeproject.org/files/ENCFF270OIC/@@download/ENCFF270OIC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF668GTU bigWig fold change over control ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF560UCX 1473326680 ENCODE Processing Pipeline 6d1a0afb715d75e89958c1b44d8c280a https://www.encodeproject.org/files/ENCFF668GTU/@@download/ENCFF668GTU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF082IUH bigWig fold change over control ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF181SRH, ENCFF560UCX 2045411797 ENCODE Processing Pipeline d4a6d3ffd8a8c4e79efacd168c6ba292 https://www.encodeproject.org/files/ENCFF082IUH/@@download/ENCFF082IUH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF319WWL bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF181SRH 6555388 ENCODE Processing Pipeline dc1fe8eceb77245781e582080549d3ad https://www.encodeproject.org/files/ENCFF319WWL/@@download/ENCFF319WWL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF707USK bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF560UCX 6653173 ENCODE Processing Pipeline d3b9e6c764774a71e171e6ae96d52e22 https://www.encodeproject.org/files/ENCFF707USK/@@download/ENCFF707USK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF634MHV bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF181SRH, ENCFF560UCX 7212531 ENCODE Processing Pipeline 04d215c361cca827ceb33a72b5ed17b0 https://www.encodeproject.org/files/ENCFF634MHV/@@download/ENCFF634MHV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF266YLC bigBed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF319WWL 11358005 ENCODE Processing Pipeline 26dbd2a59b6ef8ad0927b3e5f3ad46cb https://www.encodeproject.org/files/ENCFF266YLC/@@download/ENCFF266YLC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF006GSJ bigBed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF707USK 11298830 ENCODE Processing Pipeline 9c717b30abda2bf112c8b5bfd2fb904a https://www.encodeproject.org/files/ENCFF006GSJ/@@download/ENCFF006GSJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF695RYP bigBed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF634MHV 11226538 ENCODE Processing Pipeline 7fa0af4aac6ae4c3f6ba8ba392f380ac https://www.encodeproject.org/files/ENCFF695RYP/@@download/ENCFF695RYP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF357ZYM bed narrowPeak conservative idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF319WWL, ENCFF634MHV, ENCFF707USK 151450 ENCODE Processing Pipeline 9e1880db7967765c07d3c9cb6f8b1b62 https://www.encodeproject.org/files/ENCFF357ZYM/@@download/ENCFF357ZYM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF783HFV bigBed narrowPeak conservative idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF357ZYM 330578 ENCODE Processing Pipeline 355f8b219f12d30e2adab202b0039561 https://www.encodeproject.org/files/ENCFF783HFV/@@download/ENCFF783HFV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF750YHY bed narrowPeak optimal idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF319WWL, ENCFF634MHV, ENCFF707USK 204995 ENCODE Processing Pipeline f25c95750558fdd7c6325d7258eb364a https://www.encodeproject.org/files/ENCFF750YHY/@@download/ENCFF750YHY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF336NIM bigBed narrowPeak optimal idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF750YHY 409452 ENCODE Processing Pipeline 188d59d11db6bfcdc117722d29c75ce3 https://www.encodeproject.org/files/ENCFF336NIM/@@download/ENCFF336NIM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF692XKE bigWig signal p-value ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF112YSB 1449922998 ENCODE Processing Pipeline 6f88ec79de8229668153351e809300bf https://www.encodeproject.org/files/ENCFF692XKE/@@download/ENCFF692XKE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF530XUV bigWig signal p-value ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF861MLP 1411097551 ENCODE Processing Pipeline a982c8149cc9d06e6ffaa7bb07c8c7fd https://www.encodeproject.org/files/ENCFF530XUV/@@download/ENCFF530XUV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF531DIA bigWig signal p-value ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF112YSB, ENCFF861MLP 1969555977 ENCODE Processing Pipeline db673eab1f0ef2e4c7a3bd51885ed7a8 https://www.encodeproject.org/files/ENCFF531DIA/@@download/ENCFF531DIA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF580FAT bigWig fold change over control ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF112YSB 1482853975 ENCODE Processing Pipeline 3c1755b27f87b5790f0ee05f6c8fc5d4 https://www.encodeproject.org/files/ENCFF580FAT/@@download/ENCFF580FAT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF752VSJ bigWig fold change over control ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF861MLP 1448693440 ENCODE Processing Pipeline 8f5ff7cb263785f370972e4ca6652e46 https://www.encodeproject.org/files/ENCFF752VSJ/@@download/ENCFF752VSJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF174ISN bigWig fold change over control ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF112YSB, ENCFF861MLP 2048045653 ENCODE Processing Pipeline 07b8bface99aa79b07b3a99ab453def8 https://www.encodeproject.org/files/ENCFF174ISN/@@download/ENCFF174ISN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF402QWB bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF112YSB 6418012 ENCODE Processing Pipeline 40c7d9337e10b1653a55abb99a2927b6 https://www.encodeproject.org/files/ENCFF402QWB/@@download/ENCFF402QWB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF726VBP bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF861MLP 6528404 ENCODE Processing Pipeline 27b27487d9a95fd1ab9b574bd2c7a504 https://www.encodeproject.org/files/ENCFF726VBP/@@download/ENCFF726VBP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF515SEB bigBed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF402QWB 11359311 ENCODE Processing Pipeline ba9557b8a3f4d792d72216de95d1f4a9 https://www.encodeproject.org/files/ENCFF515SEB/@@download/ENCFF515SEB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF834MTU bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF112YSB, ENCFF861MLP 7167188 ENCODE Processing Pipeline 4d9d069c7fa806ab126f2a4e28b7a956 https://www.encodeproject.org/files/ENCFF834MTU/@@download/ENCFF834MTU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF188BXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF939CTJ 330086 ENCODE Processing Pipeline 334a31da7f037d6bf90f46f0c7438f6f https://www.encodeproject.org/files/ENCFF188BXZ/@@download/ENCFF188BXZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF418VHM bigBed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF726VBP 11305147 ENCODE Processing Pipeline f0674ea9be71329fd0a83638db47b215 https://www.encodeproject.org/files/ENCFF418VHM/@@download/ENCFF418VHM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF174ZGS bigBed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF834MTU 11241663 ENCODE Processing Pipeline 18f27a7dc4146be32951641fcadbd4e8 https://www.encodeproject.org/files/ENCFF174ZGS/@@download/ENCFF174ZGS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF939CTJ bed narrowPeak conservative idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF402QWB, ENCFF419RSJ, ENCFF726VBP, ENCFF834MTU 150851 ENCODE Processing Pipeline 1f0962b614358392fb3c1e816c8d1ffa https://www.encodeproject.org/files/ENCFF939CTJ/@@download/ENCFF939CTJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF532DFY bigBed narrowPeak optimal idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF457HJS 409738 ENCODE Processing Pipeline 9b024850894fea1ac151d6b87a97dd5a https://www.encodeproject.org/files/ENCFF532DFY/@@download/ENCFF532DFY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF457HJS bed narrowPeak optimal idr thresholded peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF402QWB, ENCFF419RSJ, ENCFF726VBP, ENCFF834MTU 204144 ENCODE Processing Pipeline d2fdf4e3b2993bd03ba05d4a1cd1da71 https://www.encodeproject.org/files/ENCFF457HJS/@@download/ENCFF457HJS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF001GVW bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWI 344288851 John Stamatoyannopoulos, UW 5fdf7aebf103b888d7e68f6223b37bed https://www.encodeproject.org/files/ENCFF001GVW/@@download/ENCFF001GVW.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GVX bigBed broadPeak hotspots ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XLP 4464924 John Stamatoyannopoulos, UW b239155ac8c2e6ad4d5a506297c1c552 https://www.encodeproject.org/files/ENCFF001GVX/@@download/ENCFF001GVX.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GVY bigBed broadPeak hotspots ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XLQ 5950818 John Stamatoyannopoulos, UW a6a3206c5a396c189983ffc831eac40f https://www.encodeproject.org/files/ENCFF001GVY/@@download/ENCFF001GVY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GVZ bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XLR 1589327 John Stamatoyannopoulos, UW 4da3750710266798b6766af4dc0fe8cb https://www.encodeproject.org/files/ENCFF001GVZ/@@download/ENCFF001GVZ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GWA bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XLS 1426459 John Stamatoyannopoulos, UW d57151adfddfbebd7ff31855e94c9b0d https://www.encodeproject.org/files/ENCFF001GWA/@@download/ENCFF001GWA.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GWC bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWK 991173124 John Stamatoyannopoulos, UW a6f07d4c02fb29cab8ad11e87b087fff https://www.encodeproject.org/files/ENCFF001GWC/@@download/ENCFF001GWC.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GWD bigWig raw signal ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GVW 68545309 John Stamatoyannopoulos, UW 5f4a5623ee7c3c21378fcefbaf8d0185 https://www.encodeproject.org/files/ENCFF001GWD/@@download/ENCFF001GWD.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GWF bigWig raw signal ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWC 192959795 John Stamatoyannopoulos, UW 6a2c3bc92df2a2c291ca4265b3850b8f https://www.encodeproject.org/files/ENCFF001GWF/@@download/ENCFF001GWF.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GWI fastq reads ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 385557057 John Stamatoyannopoulos, UW 85cf0c094020bb55726b39437c7340ce https://www.encodeproject.org/files/ENCFF001GWI/@@download/ENCFF001GWI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GWR/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001GWK fastq reads ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1054276914 John Stamatoyannopoulos, UW 4d0729e11dd5b052d99edce59243325f https://www.encodeproject.org/files/ENCFF001GWK/@@download/ENCFF001GWK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GWR/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001XLP bed broadPeak hotspots ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GVW 2454608 John Stamatoyannopoulos, UW 542e81346cc655f95b3e7dfd7dfe2515 https://www.encodeproject.org/files/ENCFF001XLP/@@download/ENCFF001XLP.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001XLQ bed broadPeak hotspots ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWC 3306983 John Stamatoyannopoulos, UW a0f8101e7d0716fe28dfec0849cb013a https://www.encodeproject.org/files/ENCFF001XLQ/@@download/ENCFF001XLQ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001XLR bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GVW 971215 John Stamatoyannopoulos, UW 1eb3db60b2fad91ea550972dd9236397 https://www.encodeproject.org/files/ENCFF001XLR/@@download/ENCFF001XLR.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001XLS bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWC 842901 John Stamatoyannopoulos, UW ef4b0ee3401bb8c942782a4352a20cdd https://www.encodeproject.org/files/ENCFF001XLS/@@download/ENCFF001XLS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF002DBV bed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GVW, ENCFF001GWC 1114889 ENCODE Consortium Analysis Working Group bbcd22b3a0bf72a88a2c3406a71386c6 https://www.encodeproject.org/files/ENCFF002DBV/@@download/ENCFF002DBV.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF730JNO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DBV 2298227 ENCODE Consortium 3657f543d334ff1864fb95189ae96f90 https://www.encodeproject.org/files/ENCFF730JNO/@@download/ENCFF730JNO.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF059BYA bam unfiltered alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWI, ENCFF643CGH 420384369 ENCODE Processing Pipeline 0b75ca376b0ffd8e2a9f01a3f907b6cf https://www.encodeproject.org/files/ENCFF059BYA/@@download/ENCFF059BYA.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF922HYP bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWI, ENCFF643CGH 273352914 ENCODE Processing Pipeline e4f8f10571d3b9d83dc2bf6516bee029 https://www.encodeproject.org/files/ENCFF922HYP/@@download/ENCFF922HYP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF047XJJ bam unfiltered alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWK, ENCFF643CGH 1242161398 ENCODE Processing Pipeline 50fac2881eaf72b5f30048cd2a3b641e https://www.encodeproject.org/files/ENCFF047XJJ/@@download/ENCFF047XJJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF350KMY bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWK, ENCFF643CGH 873201938 ENCODE Processing Pipeline 6dd834e1baa449d3c586ff6d8d81459b https://www.encodeproject.org/files/ENCFF350KMY/@@download/ENCFF350KMY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF937XGM bam unfiltered alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWI, ENCFF807MUK 419570064 ENCODE Processing Pipeline d9edd67a6046593758fba7d11bb8a91c https://www.encodeproject.org/files/ENCFF937XGM/@@download/ENCFF937XGM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF647YII bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWI, ENCFF807MUK 273529919 ENCODE Processing Pipeline cddd502e10e38a2f27fc28c4103951d7 https://www.encodeproject.org/files/ENCFF647YII/@@download/ENCFF647YII.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF086TJZ bam unfiltered alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWK, ENCFF807MUK 1236930922 ENCODE Processing Pipeline c8168916223caec16cac64130f107863 https://www.encodeproject.org/files/ENCFF086TJZ/@@download/ENCFF086TJZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF784IKK bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWK, ENCFF807MUK 873525993 ENCODE Processing Pipeline bf9c133eb736c1e2c22608e6108fbb5b https://www.encodeproject.org/files/ENCFF784IKK/@@download/ENCFF784IKK.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF411DUH bigWig fold change over control ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF083JSC, ENCFF647YII 108712056 ENCODE Processing Pipeline 09ec7c327808eaf5aa77b77f56056c51 https://www.encodeproject.org/files/ENCFF411DUH/@@download/ENCFF411DUH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF913GAA bigWig signal p-value ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF083JSC, ENCFF647YII 312144295 ENCODE Processing Pipeline 59ff3ee7de4a31ef6e2054b69bf81f73 https://www.encodeproject.org/files/ENCFF913GAA/@@download/ENCFF913GAA.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF666AOY bigWig signal p-value ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF083JSC, ENCFF784IKK 345195945 ENCODE Processing Pipeline b086ccc26bb841ededcdabcd7906d5a5 https://www.encodeproject.org/files/ENCFF666AOY/@@download/ENCFF666AOY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF252SGK bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF083JSC, ENCFF647YII, ENCFF784IKK 2586573 ENCODE Processing Pipeline 272960e49ba861017f1aa83382f7fe89 https://www.encodeproject.org/files/ENCFF252SGK/@@download/ENCFF252SGK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF465FHA bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF671VPQ 8401891 ENCODE Processing Pipeline cc9eba555e1025e71a47c3e8e63f5375 https://www.encodeproject.org/files/ENCFF465FHA/@@download/ENCFF465FHA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF671VPQ bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF083JSC, ENCFF784IKK 3970636 ENCODE Processing Pipeline 6c79784d63c63948066e481adf2d8f16 https://www.encodeproject.org/files/ENCFF671VPQ/@@download/ENCFF671VPQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF599UKE bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF738FKM 5806331 ENCODE Processing Pipeline abfb81e02353e1ef7ea15ce1d6316841 https://www.encodeproject.org/files/ENCFF599UKE/@@download/ENCFF599UKE.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF480JZB bigWig fold change over control ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF083JSC, ENCFF784IKK 325191151 ENCODE Processing Pipeline 54de0d419e808b165599acbd89c15f5c https://www.encodeproject.org/files/ENCFF480JZB/@@download/ENCFF480JZB.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF738FKM bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF083JSC, ENCFF647YII 2224631 ENCODE Processing Pipeline f94b8b4360fdbb9c8dbeb158af2f9890 https://www.encodeproject.org/files/ENCFF738FKM/@@download/ENCFF738FKM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF457FXK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF970AVM 1435917 ENCODE Processing Pipeline 46fa51fda4f37933229483832e1a9667 https://www.encodeproject.org/files/ENCFF457FXK/@@download/ENCFF457FXK.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF959OMX bigWig signal p-value ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF083JSC, ENCFF647YII, ENCFF784IKK 361022202 ENCODE Processing Pipeline 860eaaddbe74608662cf140293a54578 https://www.encodeproject.org/files/ENCFF959OMX/@@download/ENCFF959OMX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF546FTM bigWig fold change over control ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF083JSC, ENCFF647YII, ENCFF784IKK 400839687 ENCODE Processing Pipeline 40eddc5a156e28560e8817eda14e8ad4 https://www.encodeproject.org/files/ENCFF546FTM/@@download/ENCFF546FTM.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF970AVM bed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF252SGK, ENCFF671VPQ, ENCFF738FKM 774670 ENCODE Processing Pipeline f04834aa1a9828e037a2d125449602be https://www.encodeproject.org/files/ENCFF970AVM/@@download/ENCFF970AVM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF330LAL bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF252SGK 6233374 ENCODE Processing Pipeline 1dc19434eca86c6364732d2429b4f24d https://www.encodeproject.org/files/ENCFF330LAL/@@download/ENCFF330LAL.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF254PSX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF652LEH 1439131 ENCODE Processing Pipeline e4e1a27d813e98b3becfc5b1c2a1afbc https://www.encodeproject.org/files/ENCFF254PSX/@@download/ENCFF254PSX.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF661NFV bigWig fold change over control ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF922HYP 108050330 ENCODE Processing Pipeline a411e37b659e5c95fa847e54c7283494 https://www.encodeproject.org/files/ENCFF661NFV/@@download/ENCFF661NFV.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF757GIM bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF350KMY, ENCFF922HYP 2584722 ENCODE Processing Pipeline be46f1281ffe654e46138f49c16ac084 https://www.encodeproject.org/files/ENCFF757GIM/@@download/ENCFF757GIM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF557CZP bigWig signal p-value ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF922HYP 312895563 ENCODE Processing Pipeline 4624d8825a63d38b3c9bfdc073b622cd https://www.encodeproject.org/files/ENCFF557CZP/@@download/ENCFF557CZP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF550VVD bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF922HYP 2221592 ENCODE Processing Pipeline 7882f672c2cfe2acc86b1ce29f5e08f6 https://www.encodeproject.org/files/ENCFF550VVD/@@download/ENCFF550VVD.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF742QXF bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF350KMY 3954978 ENCODE Processing Pipeline 73adf2561d0033a8be3b30b262cc4d62 https://www.encodeproject.org/files/ENCFF742QXF/@@download/ENCFF742QXF.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF925TEK bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF742QXF 8385853 ENCODE Processing Pipeline 88c741349265c58d1610efea17440119 https://www.encodeproject.org/files/ENCFF925TEK/@@download/ENCFF925TEK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF078VLY bigWig fold change over control ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF350KMY, ENCFF922HYP 397643512 ENCODE Processing Pipeline 76d72128f867878b25c309fc0970d2bf https://www.encodeproject.org/files/ENCFF078VLY/@@download/ENCFF078VLY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF011GCT bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF550VVD 5809860 ENCODE Processing Pipeline 7baf2d4fbe44bae2f092ae76ed266257 https://www.encodeproject.org/files/ENCFF011GCT/@@download/ENCFF011GCT.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF674XOW bigBed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF757GIM 6228073 ENCODE Processing Pipeline 82421ff33503c2937a956bc81befcade https://www.encodeproject.org/files/ENCFF674XOW/@@download/ENCFF674XOW.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF741YEH bigWig signal p-value ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF350KMY 345063368 ENCODE Processing Pipeline 4c435f4d8cdf7ffc23d4189c295b642b https://www.encodeproject.org/files/ENCFF741YEH/@@download/ENCFF741YEH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF835FSM bigWig signal p-value ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF350KMY, ENCFF922HYP 359624800 ENCODE Processing Pipeline 58b45e78fdf0d6f1476c18ed0b0addf2 https://www.encodeproject.org/files/ENCFF835FSM/@@download/ENCFF835FSM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF899CZG bigWig fold change over control ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF350KMY 321307107 ENCODE Processing Pipeline 5502d06c7f722d62d772ce7e9a07c169 https://www.encodeproject.org/files/ENCFF899CZG/@@download/ENCFF899CZG.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF652LEH bed narrowPeak optimal idr thresholded peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF550VVD, ENCFF742QXF, ENCFF757GIM 776154 ENCODE Processing Pipeline 51b1035873c703ba70a16384c1c65d98 https://www.encodeproject.org/files/ENCFF652LEH/@@download/ENCFF652LEH.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF911JOD bam unfiltered alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWE, ENCFF807MUK 1215849621 ENCODE Processing Pipeline 28f087ca3842f4eda598ed52dc70546d https://www.encodeproject.org/files/ENCFF911JOD/@@download/ENCFF911JOD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF076YJG bam unfiltered alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWJ, ENCFF807MUK 966453564 ENCODE Processing Pipeline 61a6caf17b7b63a6b4debfd1e27ea035 https://www.encodeproject.org/files/ENCFF076YJG/@@download/ENCFF076YJG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF002EWE fastq reads ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 1 36 single-ended 998341190 Michael Snyder, Stanford 1f02522858603fc674ede6f5acb5468d SRA:SRR5112281 https://www.encodeproject.org/files/ENCFF002EWE/@@download/ENCFF002EWE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF002EWJ fastq reads ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 1 36 single-ended 863870734 Michael Snyder, Stanford 941dfe8274b071910504a166b9cfa976 SRA:SRR5112282 https://www.encodeproject.org/files/ENCFF002EWJ/@@download/ENCFF002EWJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF579IUE bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWJ, ENCFF807MUK 435387015 ENCODE Processing Pipeline a43e608109766041372e4eb2b4135475 https://www.encodeproject.org/files/ENCFF579IUE/@@download/ENCFF579IUE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF729BKM bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWE, ENCFF807MUK 837177050 ENCODE Processing Pipeline af7fbe940e1e536e17c75e495d48e9a0 https://www.encodeproject.org/files/ENCFF729BKM/@@download/ENCFF729BKM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF718AFD bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF579IUE, ENCFF879OQC 5040348 ENCODE Processing Pipeline 0ce9c9477d4487d493a5e07f3bc934fb https://www.encodeproject.org/files/ENCFF718AFD/@@download/ENCFF718AFD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF699SNH bigWig fold change over control ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF335IPE, ENCFF729BKM 434903980 ENCODE Processing Pipeline 3b875737eab8852fff7cc3df95348267 https://www.encodeproject.org/files/ENCFF699SNH/@@download/ENCFF699SNH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF765BTX bigBed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF718AFD 10915628 ENCODE Processing Pipeline cdfb9ba2c2c1a83874245f8f254f37a4 https://www.encodeproject.org/files/ENCFF765BTX/@@download/ENCFF765BTX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF092XMT bigWig signal p-value ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF335IPE, ENCFF729BKM 459420195 ENCODE Processing Pipeline 6c578183ad5fa6a1f0cd0844a27032e0 https://www.encodeproject.org/files/ENCFF092XMT/@@download/ENCFF092XMT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF481KNS bigWig signal p-value ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF579IUE, ENCFF879OQC 418426754 ENCODE Processing Pipeline 204b305fac1ca0dad6c9f9a4a0af20b8 https://www.encodeproject.org/files/ENCFF481KNS/@@download/ENCFF481KNS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF791GAM bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF335IPE, ENCFF729BKM 5988481 ENCODE Processing Pipeline 99ecd27acaeac0e97bc7a7718227b136 https://www.encodeproject.org/files/ENCFF791GAM/@@download/ENCFF791GAM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF877VHC bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF335IPE, ENCFF579IUE, ENCFF729BKM, ENCFF879OQC 6859409 ENCODE Processing Pipeline d8dbb7005f5ec54696e86d6fe01e27c4 https://www.encodeproject.org/files/ENCFF877VHC/@@download/ENCFF877VHC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF669LRL bigWig signal p-value ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF335IPE, ENCFF579IUE, ENCFF729BKM, ENCFF879OQC 817415323 ENCODE Processing Pipeline 9affa393f49f976f2b6d335a90272946 https://www.encodeproject.org/files/ENCFF669LRL/@@download/ENCFF669LRL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF588KVD bigWig fold change over control ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF579IUE, ENCFF879OQC 263326629 ENCODE Processing Pipeline 418ebfea0ac1b685876b683bccc4900e https://www.encodeproject.org/files/ENCFF588KVD/@@download/ENCFF588KVD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF783JQV bigWig fold change over control ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF335IPE, ENCFF579IUE, ENCFF729BKM, ENCFF879OQC 798957571 ENCODE Processing Pipeline f921e302d5ea3685ada110e92037ce4b https://www.encodeproject.org/files/ENCFF783JQV/@@download/ENCFF783JQV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF665MON bigBed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF791GAM 13078855 ENCODE Processing Pipeline 6aa3a22122d9e37ea4f7700d66a3454d https://www.encodeproject.org/files/ENCFF665MON/@@download/ENCFF665MON.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF745QPA bigBed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF877VHC 13108367 ENCODE Processing Pipeline b8006e5ea5f8f85328e910fbb3624004 https://www.encodeproject.org/files/ENCFF745QPA/@@download/ENCFF745QPA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF706HJC bam unfiltered alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWE, ENCFF643CGH 1222851194 ENCODE Processing Pipeline 993ac10050c29a68af41cdc158d08ab9 https://www.encodeproject.org/files/ENCFF706HJC/@@download/ENCFF706HJC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF900RPG bam unfiltered alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWJ, ENCFF643CGH 971288421 ENCODE Processing Pipeline 792f48792294d28e7e3bee43d39ae510 https://www.encodeproject.org/files/ENCFF900RPG/@@download/ENCFF900RPG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF385PRZ bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWJ, ENCFF643CGH 435059065 ENCODE Processing Pipeline a0a393f6fe1563780404b9617bf64346 https://www.encodeproject.org/files/ENCFF385PRZ/@@download/ENCFF385PRZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF315DZX bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWE, ENCFF643CGH 836591325 ENCODE Processing Pipeline 7453b198663bf10a85512ffc3a8e5e22 https://www.encodeproject.org/files/ENCFF315DZX/@@download/ENCFF315DZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF385GEE bigWig signal p-value ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF156FED, ENCFF315DZX 504465328 ENCODE Processing Pipeline b3460b8a69413c041bd91e11e68caf2f https://www.encodeproject.org/files/ENCFF385GEE/@@download/ENCFF385GEE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF034GFV bigWig signal p-value ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF385PRZ, ENCFF577FNG 416498004 ENCODE Processing Pipeline b6a5d156676fda14f1decfd7889c8eee https://www.encodeproject.org/files/ENCFF034GFV/@@download/ENCFF034GFV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF271XJX bigWig signal p-value ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF156FED, ENCFF315DZX, ENCFF385PRZ, ENCFF577FNG 997518452 ENCODE Processing Pipeline bce60b7b19c8b20bae6356e19ccd8d69 https://www.encodeproject.org/files/ENCFF271XJX/@@download/ENCFF271XJX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF452UEO bigWig fold change over control ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF156FED, ENCFF315DZX 431093445 ENCODE Processing Pipeline 278de196aacf3d5ada6c0c901d7db800 https://www.encodeproject.org/files/ENCFF452UEO/@@download/ENCFF452UEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF893PMR bigWig fold change over control ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF385PRZ, ENCFF577FNG 264009191 ENCODE Processing Pipeline 740527acde03925604ed998649caf358 https://www.encodeproject.org/files/ENCFF893PMR/@@download/ENCFF893PMR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF743WQN bigWig fold change over control ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF156FED, ENCFF315DZX, ENCFF385PRZ, ENCFF577FNG 824203965 ENCODE Processing Pipeline e2acdef1d76c1461c980e08666707968 https://www.encodeproject.org/files/ENCFF743WQN/@@download/ENCFF743WQN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF006BQW bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF385PRZ, ENCFF577FNG 4825137 ENCODE Processing Pipeline 00da91069b53ab211d31f1f61e1e05d7 https://www.encodeproject.org/files/ENCFF006BQW/@@download/ENCFF006BQW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF930ANP bigBed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF006BQW 10747785 ENCODE Processing Pipeline b1a4c4629f1eb77ac8b4f71b9275a9b8 https://www.encodeproject.org/files/ENCFF930ANP/@@download/ENCFF930ANP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF695GOE bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF156FED, ENCFF315DZX 5798010 ENCODE Processing Pipeline e2b883bccd59f19e01b7955fd7388c77 https://www.encodeproject.org/files/ENCFF695GOE/@@download/ENCFF695GOE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF419HDS bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF156FED, ENCFF315DZX, ENCFF385PRZ, ENCFF577FNG 6734540 ENCODE Processing Pipeline ef570450c6a5057d95e592dcea641a20 https://www.encodeproject.org/files/ENCFF419HDS/@@download/ENCFF419HDS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF771ZFN bigBed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF695GOE 13062696 ENCODE Processing Pipeline da720ff99c80b4654afad3bb83fa8b12 https://www.encodeproject.org/files/ENCFF771ZFN/@@download/ENCFF771ZFN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF446MUL bed narrowPeak conservative idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF006BQW, ENCFF419HDS, ENCFF419RSJ, ENCFF695GOE 213036 ENCODE Processing Pipeline b3e1cdd432d61c6e50569e9a00aafeb3 https://www.encodeproject.org/files/ENCFF446MUL/@@download/ENCFF446MUL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF802JAN bed narrowPeak optimal idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF006BQW, ENCFF419HDS, ENCFF419RSJ, ENCFF695GOE 250513 ENCODE Processing Pipeline 24417aa4f4564a237fc97e6e33fd4e0c https://www.encodeproject.org/files/ENCFF802JAN/@@download/ENCFF802JAN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF823LMU bigBed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419HDS 13114290 ENCODE Processing Pipeline d0f518c8ab7943fe8a5e6cbfbcc3b200 https://www.encodeproject.org/files/ENCFF823LMU/@@download/ENCFF823LMU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF045JDI bigBed narrowPeak optimal idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF802JAN 639544 ENCODE Processing Pipeline 85adb33be5eb06d0462243f8ab8dca01 https://www.encodeproject.org/files/ENCFF045JDI/@@download/ENCFF045JDI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF963AVA bigBed narrowPeak conservative idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF446MUL 570597 ENCODE Processing Pipeline ef3b1c5425880f1888cdbbf811bf7741 https://www.encodeproject.org/files/ENCFF963AVA/@@download/ENCFF963AVA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF191MPD bed narrowPeak optimal idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF718AFD, ENCFF791GAM, ENCFF877VHC 209919 ENCODE Processing Pipeline 73ff664a4d223fafe5f230e633552942 https://www.encodeproject.org/files/ENCFF191MPD/@@download/ENCFF191MPD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF435GRA bed narrowPeak conservative idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF718AFD, ENCFF791GAM, ENCFF877VHC 181213 ENCODE Processing Pipeline c2b3c97807efdbd5b9476a0dcd9c6b47 https://www.encodeproject.org/files/ENCFF435GRA/@@download/ENCFF435GRA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF795WTG bigBed narrowPeak optimal idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF191MPD 477739 ENCODE Processing Pipeline bc019ad36e8e1d9a420011e6890677c0 https://www.encodeproject.org/files/ENCFF795WTG/@@download/ENCFF795WTG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF124XAU bigBed narrowPeak conservative idr thresholded peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF435GRA 432611 ENCODE Processing Pipeline 0545439b470a576d07e295bf34ff75d3 https://www.encodeproject.org/files/ENCFF124XAU/@@download/ENCFF124XAU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF438QQH fastq reads ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF933DHP 3734417380 Michael Snyder, Stanford 8d5731187e726ddeda0c2e0539f93912 https://www.encodeproject.org/files/ENCFF438QQH/@@download/ENCFF438QQH.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF933DHP fastq reads ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF438QQH 3401512885 Michael Snyder, Stanford a35d338e539e47d47e0faec95b99cc01 https://www.encodeproject.org/files/ENCFF933DHP/@@download/ENCFF933DHP.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF522KRF fastq reads ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF891NFG 3337520059 Michael Snyder, Stanford 909b7e2abe795f3ea03dd9f6ae3cdcd1 https://www.encodeproject.org/files/ENCFF522KRF/@@download/ENCFF522KRF.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF891NFG fastq reads ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF522KRF 3036958041 Michael Snyder, Stanford ca46acc3608a579e5ffcd2e26ec25a1a https://www.encodeproject.org/files/ENCFF891NFG/@@download/ENCFF891NFG.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF127FGI bam unfiltered alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF522KRF, ENCFF807MUK, ENCFF891NFG 6133857519 ENCODE Processing Pipeline b5035c671c45f458f4f84a9e67751bb4 https://www.encodeproject.org/files/ENCFF127FGI/@@download/ENCFF127FGI.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF391HMM bam unfiltered alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF522KRF, ENCFF643CGH, ENCFF891NFG 6142806536 ENCODE Processing Pipeline 93df8f7312ca23843a1ac9dede098312 https://www.encodeproject.org/files/ENCFF391HMM/@@download/ENCFF391HMM.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF202SNQ bam unfiltered alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF438QQH, ENCFF643CGH, ENCFF933DHP 6937221364 ENCODE Processing Pipeline d5f4c334c6b72e0c7c308d064ee39992 https://www.encodeproject.org/files/ENCFF202SNQ/@@download/ENCFF202SNQ.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF650LSG bam unfiltered alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF438QQH, ENCFF807MUK, ENCFF933DHP 6927984401 ENCODE Processing Pipeline f628c3d733894cabffead16fda69c8e0 https://www.encodeproject.org/files/ENCFF650LSG/@@download/ENCFF650LSG.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF104WBB bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF522KRF, ENCFF643CGH, ENCFF891NFG 4387821908 ENCODE Processing Pipeline 54938d2540de66dbb7075c05ebf11d30 https://www.encodeproject.org/files/ENCFF104WBB/@@download/ENCFF104WBB.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF548ORK bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF522KRF, ENCFF807MUK, ENCFF891NFG 4383020422 ENCODE Processing Pipeline f46db7792fc52f371b3837112b66a158 https://www.encodeproject.org/files/ENCFF548ORK/@@download/ENCFF548ORK.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF621SSO bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF438QQH, ENCFF643CGH, ENCFF933DHP 5509266996 ENCODE Processing Pipeline 2ebd5b6e5c785d8410986e097b384567 https://www.encodeproject.org/files/ENCFF621SSO/@@download/ENCFF621SSO.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF607MTM bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF438QQH, ENCFF807MUK, ENCFF933DHP 5504896896 ENCODE Processing Pipeline f6a9a63fe3229bc561cdc47e15f0bf0d https://www.encodeproject.org/files/ENCFF607MTM/@@download/ENCFF607MTM.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF370SGR bigWig signal p-value ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF607MTM, ENCFF834TUP 1604325694 ENCODE Processing Pipeline 25d4fad2a1dc0a5aded4ecb8a3eb2db5 https://www.encodeproject.org/files/ENCFF370SGR/@@download/ENCFF370SGR.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF114HMG bigWig signal p-value ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF548ORK, ENCFF834TUP 1124972536 ENCODE Processing Pipeline 88cef7025f87a655441e5896ed7a0070 https://www.encodeproject.org/files/ENCFF114HMG/@@download/ENCFF114HMG.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF329ZWA bigWig signal p-value ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF548ORK, ENCFF607MTM, ENCFF834TUP 2373607336 ENCODE Processing Pipeline 06a54bbb571538f8addf3cb4594ec9df https://www.encodeproject.org/files/ENCFF329ZWA/@@download/ENCFF329ZWA.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF537VPU bigWig fold change over control ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF607MTM, ENCFF834TUP 1986159492 ENCODE Processing Pipeline 7d3eaa5361e1b7f492e32b110c90c521 https://www.encodeproject.org/files/ENCFF537VPU/@@download/ENCFF537VPU.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF839MRN bigWig fold change over control ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF548ORK, ENCFF834TUP 1407244661 ENCODE Processing Pipeline a6715d23d78f8248a93ade89981ef0b2 https://www.encodeproject.org/files/ENCFF839MRN/@@download/ENCFF839MRN.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF232LHF bigWig fold change over control ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF548ORK, ENCFF607MTM, ENCFF834TUP 2504054910 ENCODE Processing Pipeline c074703b168df75005c93699d7c08b90 https://www.encodeproject.org/files/ENCFF232LHF/@@download/ENCFF232LHF.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF814OZQ bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF607MTM, ENCFF834TUP 6965642 ENCODE Processing Pipeline 0718b01612a32df7f0c0beace60bd8e5 https://www.encodeproject.org/files/ENCFF814OZQ/@@download/ENCFF814OZQ.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF020AOB bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF548ORK, ENCFF834TUP 6509636 ENCODE Processing Pipeline f17aecc21850d6d815c28196a603ebca https://www.encodeproject.org/files/ENCFF020AOB/@@download/ENCFF020AOB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF400SXR bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF548ORK, ENCFF607MTM, ENCFF834TUP 7234307 ENCODE Processing Pipeline e6c978613342a8dfe04425ba52b872a3 https://www.encodeproject.org/files/ENCFF400SXR/@@download/ENCFF400SXR.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF635RNS bigBed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF814OZQ 10960760 ENCODE Processing Pipeline c7e91bd1eb244f62cd2702d17d819710 https://www.encodeproject.org/files/ENCFF635RNS/@@download/ENCFF635RNS.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF402DQV bigBed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF400SXR 11047535 ENCODE Processing Pipeline d9f86a016ed7ea08ea17794aafc1d5be https://www.encodeproject.org/files/ENCFF402DQV/@@download/ENCFF402DQV.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF575BHI bigBed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF020AOB 11280024 ENCODE Processing Pipeline e3d4a67ef234b21a2256404164ec5154 https://www.encodeproject.org/files/ENCFF575BHI/@@download/ENCFF575BHI.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF272SYI bigBed narrowPeak conservative idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF629ETI 91654 ENCODE Processing Pipeline 6212ec03ad109b195aa0d135a2eb43cf https://www.encodeproject.org/files/ENCFF272SYI/@@download/ENCFF272SYI.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF672VWD bigBed narrowPeak optimal idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF772ALM 96224 ENCODE Processing Pipeline a4f424607f10dbab40648b39bee4e9b0 https://www.encodeproject.org/files/ENCFF672VWD/@@download/ENCFF672VWD.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched status, mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF383KZY bed narrowPeak conservative idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF020AOB, ENCFF400SXR, ENCFF814OZQ 11732 ENCODE Processing Pipeline bc7344ceaf9e912f6902a9dcac332baa https://www.encodeproject.org/files/ENCFF383KZY/@@download/ENCFF383KZY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF589EVD bed narrowPeak optimal idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF020AOB, ENCFF400SXR, ENCFF814OZQ 19154 ENCODE Processing Pipeline ec744580c8d5e3a55f5e1cc70aa5970c https://www.encodeproject.org/files/ENCFF589EVD/@@download/ENCFF589EVD.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF843EUH bigWig signal p-value ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF621SSO, ENCFF712WXB, ENCFF790TAN 1639551331 ENCODE Processing Pipeline e159ac56489ad93b8a5672725e4a2bd5 https://www.encodeproject.org/files/ENCFF843EUH/@@download/ENCFF843EUH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF497ZTT bigWig signal p-value ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF104WBB, ENCFF712WXB 1202431181 ENCODE Processing Pipeline c171a0b36497220942b488a2dc9d1bb1 https://www.encodeproject.org/files/ENCFF497ZTT/@@download/ENCFF497ZTT.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF568XXO bigWig signal p-value ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104WBB, ENCFF621SSO, ENCFF712WXB, ENCFF790TAN 2230018563 ENCODE Processing Pipeline 97e84b66a60e9687cde09cba994928fe https://www.encodeproject.org/files/ENCFF568XXO/@@download/ENCFF568XXO.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF564SAJ bigWig fold change over control ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF621SSO, ENCFF712WXB, ENCFF790TAN 1981929582 ENCODE Processing Pipeline 3a951b250c25939d66e1538592709d69 https://www.encodeproject.org/files/ENCFF564SAJ/@@download/ENCFF564SAJ.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF729CAN bigWig fold change over control ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF104WBB, ENCFF712WXB 1403684539 ENCODE Processing Pipeline 4e4f96258ef8d3646bb84da394936087 https://www.encodeproject.org/files/ENCFF729CAN/@@download/ENCFF729CAN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF381GEM bigWig fold change over control ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104WBB, ENCFF621SSO, ENCFF712WXB, ENCFF790TAN 2499612725 ENCODE Processing Pipeline baa10e9f5287d53ff79c284473a364a8 https://www.encodeproject.org/files/ENCFF381GEM/@@download/ENCFF381GEM.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF150DPM bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF621SSO, ENCFF712WXB, ENCFF790TAN 6889153 ENCODE Processing Pipeline 4050b3290ea6c99db7ad3980449e5413 https://www.encodeproject.org/files/ENCFF150DPM/@@download/ENCFF150DPM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF529XYW bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF104WBB, ENCFF712WXB 6302811 ENCODE Processing Pipeline b6749ae5e0e10cac730b46ad783af45f https://www.encodeproject.org/files/ENCFF529XYW/@@download/ENCFF529XYW.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF887JUG bigBed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF150DPM 10981647 ENCODE Processing Pipeline 12ccbc7fe5764008572f97bf9c148e30 https://www.encodeproject.org/files/ENCFF887JUG/@@download/ENCFF887JUG.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF202NFZ bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF104WBB, ENCFF621SSO, ENCFF712WXB, ENCFF790TAN 7216787 ENCODE Processing Pipeline 752454e49ef4c86cfe6f577c0d2752d3 https://www.encodeproject.org/files/ENCFF202NFZ/@@download/ENCFF202NFZ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF529ZVG bigBed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF529XYW 11301434 ENCODE Processing Pipeline 031a44b466ee807290f66d9509a82393 https://www.encodeproject.org/files/ENCFF529ZVG/@@download/ENCFF529ZVG.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF499ABA bigBed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF202NFZ 11066048 ENCODE Processing Pipeline 4342289ef8e20f24ba4c43e862c1e98b https://www.encodeproject.org/files/ENCFF499ABA/@@download/ENCFF499ABA.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF399HPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF328SSL 97547 ENCODE Processing Pipeline 2b93add0239925f75f01ee0ebc4e0d86 https://www.encodeproject.org/files/ENCFF399HPQ/@@download/ENCFF399HPQ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF583UGE bed narrowPeak conservative idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF150DPM, ENCFF202NFZ, ENCFF419RSJ, ENCFF529XYW 12398 ENCODE Processing Pipeline 6622dc51761fd083ac38f599c81ecbf4 https://www.encodeproject.org/files/ENCFF583UGE/@@download/ENCFF583UGE.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF895FXW bigBed narrowPeak conservative idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF583UGE 95184 ENCODE Processing Pipeline 058b9dd56662c5c9e6ba227b14414081 https://www.encodeproject.org/files/ENCFF895FXW/@@download/ENCFF895FXW.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF328SSL bed narrowPeak optimal idr thresholded peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF150DPM, ENCFF202NFZ, ENCFF419RSJ, ENCFF529XYW 18840 ENCODE Processing Pipeline c3db005aa15a915ea55304faef8d8303 https://www.encodeproject.org/files/ENCFF328SSL/@@download/ENCFF328SSL.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF631KTX bam unfiltered alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165NJF, ENCFF226TLO, ENCFF807MUK 4342039108 ENCODE Processing Pipeline d2a1b579685d3e5912ceff082cbe774e https://www.encodeproject.org/files/ENCFF631KTX/@@download/ENCFF631KTX.bam hg19 released low read depth ENCFF667OBY bam unfiltered alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF033TZD, ENCFF137DWP, ENCFF807MUK 3489608894 ENCODE Processing Pipeline e4a52bf281481a46bdba4eb8e7be5435 https://www.encodeproject.org/files/ENCFF667OBY/@@download/ENCFF667OBY.bam hg19 released low read depth ENCFF226TLO fastq reads ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF165NJF 2031072253 Michael Snyder, Stanford 1dfbb504830e25ea1a48edd1c94b49e3 SRA:SRR5112295 https://www.encodeproject.org/files/ENCFF226TLO/@@download/ENCFF226TLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF033TZD fastq reads ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF137DWP 1632516739 Michael Snyder, Stanford 6b91c7772d5e563dc3a4159e16d83f7b SRA:SRR5112294 https://www.encodeproject.org/files/ENCFF033TZD/@@download/ENCFF033TZD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF165NJF fastq reads ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF226TLO 1920578294 Michael Snyder, Stanford 5729717c803104c446d9b859b3f79b7a SRA:SRR5112295 https://www.encodeproject.org/files/ENCFF165NJF/@@download/ENCFF165NJF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF137DWP fastq reads ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF033TZD 1540252021 Michael Snyder, Stanford 07dea25cf91a35c313aca482d7e1f294 SRA:SRR5112294 https://www.encodeproject.org/files/ENCFF137DWP/@@download/ENCFF137DWP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF690URW bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165NJF, ENCFF226TLO, ENCFF807MUK 3508571922 ENCODE Processing Pipeline 9f9fbf81b0778a45d498f71db3b5ee60 https://www.encodeproject.org/files/ENCFF690URW/@@download/ENCFF690URW.bam hg19 released low read depth ENCFF208HMF bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF033TZD, ENCFF137DWP, ENCFF807MUK 2580706789 ENCODE Processing Pipeline 51e9c1adc7202e6097699440744bd042 https://www.encodeproject.org/files/ENCFF208HMF/@@download/ENCFF208HMF.bam hg19 released low read depth ENCFF409BLL bigWig signal p-value ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF208HMF, ENCFF581ZJL 981600253 ENCODE Processing Pipeline ff1f26b9c2a16ab2064ab70c030747a6 https://www.encodeproject.org/files/ENCFF409BLL/@@download/ENCFF409BLL.bigWig hg19 released low read depth ENCFF018FJF bigWig signal p-value ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF690URW 911705528 ENCODE Processing Pipeline fb74edb703f9b726ead77f969b626c44 https://www.encodeproject.org/files/ENCFF018FJF/@@download/ENCFF018FJF.bigWig hg19 released low read depth ENCFF163ACV bigWig signal p-value ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF208HMF, ENCFF581ZJL, ENCFF690URW 1613135529 ENCODE Processing Pipeline 32d3d8575ddd2d142f0f2817d560578c https://www.encodeproject.org/files/ENCFF163ACV/@@download/ENCFF163ACV.bigWig hg19 released low read depth ENCFF896RWL bigWig fold change over control ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF208HMF, ENCFF581ZJL 855348682 ENCODE Processing Pipeline 648ab46f4e796f3e4817bd1356c3a598 https://www.encodeproject.org/files/ENCFF896RWL/@@download/ENCFF896RWL.bigWig hg19 released low read depth ENCFF706GOU bigWig fold change over control ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF690URW 1018513422 ENCODE Processing Pipeline 930929a460bc3e26fb5853ed7df919d4 https://www.encodeproject.org/files/ENCFF706GOU/@@download/ENCFF706GOU.bigWig hg19 released low read depth ENCFF786SHU bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF690URW 6674084 ENCODE Processing Pipeline 5ffc9373da303fbbce7ff3bcee792941 https://www.encodeproject.org/files/ENCFF786SHU/@@download/ENCFF786SHU.bed.gz hg19 released low read depth ENCFF941LGJ bigWig fold change over control ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF208HMF, ENCFF581ZJL, ENCFF690URW 1839243030 ENCODE Processing Pipeline 523e5a4a05db8d27180eed1a24c070bc https://www.encodeproject.org/files/ENCFF941LGJ/@@download/ENCFF941LGJ.bigWig hg19 released low read depth ENCFF428HHR bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF208HMF, ENCFF581ZJL 6312651 ENCODE Processing Pipeline 7b8c9af1b060b40e547da91d419384f4 https://www.encodeproject.org/files/ENCFF428HHR/@@download/ENCFF428HHR.bed.gz hg19 released low read depth ENCFF682SOZ bigBed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF428HHR 13358137 ENCODE Processing Pipeline c10d0c38af2808658258618769c99032 https://www.encodeproject.org/files/ENCFF682SOZ/@@download/ENCFF682SOZ.bigBed hg19 released low read depth ENCFF633IWB bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF208HMF, ENCFF581ZJL, ENCFF690URW 7176680 ENCODE Processing Pipeline b908015cbd5ccd5a2dda5c8ea4cd6dc2 https://www.encodeproject.org/files/ENCFF633IWB/@@download/ENCFF633IWB.bed.gz hg19 released low read depth ENCFF529QGD bigBed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF786SHU 13270670 ENCODE Processing Pipeline 023e3d4301989da5925986ed30d3ed5f https://www.encodeproject.org/files/ENCFF529QGD/@@download/ENCFF529QGD.bigBed hg19 released low read depth ENCFF154WLA bigBed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF633IWB 13174617 ENCODE Processing Pipeline 39d50700e0ef1df1273ec959c2d2e536 https://www.encodeproject.org/files/ENCFF154WLA/@@download/ENCFF154WLA.bigBed hg19 released low read depth ENCFF941FBC bam unfiltered alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF033TZD, ENCFF137DWP, ENCFF643CGH 3490966366 ENCODE Processing Pipeline 1b822cac77b847791f9e7cebbd709658 https://www.encodeproject.org/files/ENCFF941FBC/@@download/ENCFF941FBC.bam GRCh38 released low read depth ENCFF814XIO bam unfiltered alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165NJF, ENCFF226TLO, ENCFF643CGH 4344109377 ENCODE Processing Pipeline ae3763c768d1c56aefd5307f03b9065a https://www.encodeproject.org/files/ENCFF814XIO/@@download/ENCFF814XIO.bam GRCh38 released low read depth ENCFF427CAA bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF033TZD, ENCFF137DWP, ENCFF643CGH 2582870805 ENCODE Processing Pipeline 0fc8845f6ed6a8c0e31fe83ea6693e87 https://www.encodeproject.org/files/ENCFF427CAA/@@download/ENCFF427CAA.bam GRCh38 released low read depth ENCFF314PZG bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165NJF, ENCFF226TLO, ENCFF643CGH 3510760816 ENCODE Processing Pipeline 01127955be0c195a54c8304bfa79ae75 https://www.encodeproject.org/files/ENCFF314PZG/@@download/ENCFF314PZG.bam GRCh38 released low read depth ENCFF103BQB bigWig signal p-value ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF427CAA, ENCFF910IKB 944247222 ENCODE Processing Pipeline c286e84259de3d212d68f8f82109297e https://www.encodeproject.org/files/ENCFF103BQB/@@download/ENCFF103BQB.bigWig GRCh38 released low read depth ENCFF609VDX bigWig signal p-value ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF314PZG 1088538130 ENCODE Processing Pipeline a93b369e7e8201e8ca62024512e6f53f https://www.encodeproject.org/files/ENCFF609VDX/@@download/ENCFF609VDX.bigWig GRCh38 released low read depth ENCFF484FFQ bigWig signal p-value ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF314PZG, ENCFF427CAA, ENCFF910IKB 1779966559 ENCODE Processing Pipeline ccc48e7ef13501d4810e670ae0001a6e https://www.encodeproject.org/files/ENCFF484FFQ/@@download/ENCFF484FFQ.bigWig GRCh38 released low read depth ENCFF867SJZ bigWig fold change over control ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF427CAA, ENCFF910IKB 855880739 ENCODE Processing Pipeline ea7b73a52b09f2446bce57da64f7f2b3 https://www.encodeproject.org/files/ENCFF867SJZ/@@download/ENCFF867SJZ.bigWig GRCh38 released low read depth ENCFF676KXZ bigWig fold change over control ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF314PZG 1014561445 ENCODE Processing Pipeline ab4add7115107cfb9e01f68f1af9d028 https://www.encodeproject.org/files/ENCFF676KXZ/@@download/ENCFF676KXZ.bigWig GRCh38 released low read depth ENCFF428TVE bigWig fold change over control ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF314PZG, ENCFF427CAA, ENCFF910IKB 1853731769 ENCODE Processing Pipeline 92c882a9b81551084b996a943c5e387c https://www.encodeproject.org/files/ENCFF428TVE/@@download/ENCFF428TVE.bigWig GRCh38 released low read depth ENCFF399LZL bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF427CAA, ENCFF910IKB 6160121 ENCODE Processing Pipeline 426e7ae48529c34482ddc45a60186c55 https://www.encodeproject.org/files/ENCFF399LZL/@@download/ENCFF399LZL.bed.gz GRCh38 released low read depth ENCFF947VSX bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF314PZG 6561827 ENCODE Processing Pipeline 403f1774e65df6f1b16e1a77848ec318 https://www.encodeproject.org/files/ENCFF947VSX/@@download/ENCFF947VSX.bed.gz GRCh38 released low read depth ENCFF227NAG bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF314PZG, ENCFF427CAA, ENCFF910IKB 7141205 ENCODE Processing Pipeline 52e9c6e7fe3f409edbd17b62a8cf7605 https://www.encodeproject.org/files/ENCFF227NAG/@@download/ENCFF227NAG.bed.gz GRCh38 released low read depth ENCFF822FZI bigBed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF399LZL 13353474 ENCODE Processing Pipeline 03b8633c8578134c15be46b438a2f869 https://www.encodeproject.org/files/ENCFF822FZI/@@download/ENCFF822FZI.bigBed GRCh38 released low read depth ENCFF587EAI bigBed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF947VSX 13278468 ENCODE Processing Pipeline 2b604eeed1ef2634b914b23b28552cd7 https://www.encodeproject.org/files/ENCFF587EAI/@@download/ENCFF587EAI.bigBed GRCh38 released low read depth ENCFF663HCO bigBed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227NAG 13203436 ENCODE Processing Pipeline cb29f570a0e60aaa77ccdc4480b82d95 https://www.encodeproject.org/files/ENCFF663HCO/@@download/ENCFF663HCO.bigBed GRCh38 released low read depth ENCFF371FZO bed narrowPeak conservative idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227NAG, ENCFF399LZL, ENCFF419RSJ, ENCFF947VSX 172119 ENCODE Processing Pipeline fb425035e45219df7e6857a720b762af https://www.encodeproject.org/files/ENCFF371FZO/@@download/ENCFF371FZO.bed.gz GRCh38 released low read depth ENCFF256JDR bigBed narrowPeak conservative idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF371FZO 366050 ENCODE Processing Pipeline 136a0b65b827291326db9671a123d31d https://www.encodeproject.org/files/ENCFF256JDR/@@download/ENCFF256JDR.bigBed GRCh38 released low read depth ENCFF382RFJ bed narrowPeak optimal idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227NAG, ENCFF399LZL, ENCFF419RSJ, ENCFF947VSX 293750 ENCODE Processing Pipeline 94a6818dd2484bf30baacc328b3f53e3 https://www.encodeproject.org/files/ENCFF382RFJ/@@download/ENCFF382RFJ.bed.gz GRCh38 released low read depth ENCFF073AYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF382RFJ 648270 ENCODE Processing Pipeline 5617f02ee9738393afb9a3dce349e89d https://www.encodeproject.org/files/ENCFF073AYZ/@@download/ENCFF073AYZ.bigBed GRCh38 released low read depth ENCFF152WSS bed narrowPeak conservative idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF428HHR, ENCFF633IWB, ENCFF786SHU 145412 ENCODE Processing Pipeline 4ded47f7fed94992b16ae022272e8b84 https://www.encodeproject.org/files/ENCFF152WSS/@@download/ENCFF152WSS.bed.gz hg19 released low read depth ENCFF640GGM bigBed narrowPeak conservative idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF152WSS 329746 ENCODE Processing Pipeline 9ec5bfcb7d110e47f2e9e65ac605c83c https://www.encodeproject.org/files/ENCFF640GGM/@@download/ENCFF640GGM.bigBed hg19 released low read depth ENCFF701NVT bed narrowPeak optimal idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF428HHR, ENCFF633IWB, ENCFF786SHU 243759 ENCODE Processing Pipeline 2d4ce296af6dc930e1ec43681398c171 https://www.encodeproject.org/files/ENCFF701NVT/@@download/ENCFF701NVT.bed.gz hg19 released low read depth ENCFF686EVC bigBed narrowPeak optimal idr thresholded peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF701NVT 461258 ENCODE Processing Pipeline 2bf84544af86cba6c64f2ceb3062671c https://www.encodeproject.org/files/ENCFF686EVC/@@download/ENCFF686EVC.bigBed hg19 released low read depth ENCFF850SND bam unfiltered alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEE, ENCFF807MUK 1015450211 ENCODE Processing Pipeline 506cd27a56c8206d4a6272cf1ada8131 https://www.encodeproject.org/files/ENCFF850SND/@@download/ENCFF850SND.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF235XWE bam unfiltered alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002EEI, ENCFF807MUK 1189920576 ENCODE Processing Pipeline 4c39c900870220e99de8f5a5e92c9a9e https://www.encodeproject.org/files/ENCFF235XWE/@@download/ENCFF235XWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF575XHE bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 381997465 ENCODE Processing Pipeline daa8db2e5c8632e2790b3dd3d150c382 https://www.encodeproject.org/files/ENCFF575XHE/@@download/ENCFF575XHE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF475PLE bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 501900155 ENCODE Processing Pipeline e664318e8a0fd271eada1e761b382475 https://www.encodeproject.org/files/ENCFF475PLE/@@download/ENCFF475PLE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF784ZJQ bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 974336615 ENCODE Processing Pipeline 9c8d50acc10a29a4e1e5e0db3d113d37 https://www.encodeproject.org/files/ENCFF784ZJQ/@@download/ENCFF784ZJQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF324NIB bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 948624567 ENCODE Processing Pipeline 77055938af1c7e34ec9b37648fccd487 https://www.encodeproject.org/files/ENCFF324NIB/@@download/ENCFF324NIB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF830WTR bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF729TUK, ENCFF879OQC 4750603 ENCODE Processing Pipeline da1adcf7c8e65b129d23f74d360c650a https://www.encodeproject.org/files/ENCFF830WTR/@@download/ENCFF830WTR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF355FJN bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 4271462 ENCODE Processing Pipeline dca743565f99bebc0a1da12f168a6062 https://www.encodeproject.org/files/ENCFF355FJN/@@download/ENCFF355FJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF560NMX bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF355FJN 10643754 ENCODE Processing Pipeline df22f3045904f902e503dc089a303208 https://www.encodeproject.org/files/ENCFF560NMX/@@download/ENCFF560NMX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF895ZCE bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 5962018 ENCODE Processing Pipeline 93baf08902be699318abb079c986deac https://www.encodeproject.org/files/ENCFF895ZCE/@@download/ENCFF895ZCE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF119ASS bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF830WTR 10941614 ENCODE Processing Pipeline 9b0fc1abfc2dfcaa906110760efd54ee https://www.encodeproject.org/files/ENCFF119ASS/@@download/ENCFF119ASS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF866AYD bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF895ZCE 11288710 ENCODE Processing Pipeline 4044425dd19e5fb7381a181b7870630e https://www.encodeproject.org/files/ENCFF866AYD/@@download/ENCFF866AYD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF925MHB bed narrowPeak optimal idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF001TDO, ENCFF355FJN, ENCFF830WTR, ENCFF895ZCE 24634 ENCODE Processing Pipeline 883e9c0b1e68c25bad97a58920ac3f58 https://www.encodeproject.org/files/ENCFF925MHB/@@download/ENCFF925MHB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF803JOE bed narrowPeak conservative idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF001TDO, ENCFF355FJN, ENCFF830WTR, ENCFF895ZCE 16238 ENCODE Processing Pipeline 8cb60e5e44b5ae74ee8438a9aed9f48c https://www.encodeproject.org/files/ENCFF803JOE/@@download/ENCFF803JOE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF609DVV bigBed narrowPeak conservative idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF803JOE 82947 ENCODE Processing Pipeline d5fb0c175930d3aeb6b7ea5424ea114c https://www.encodeproject.org/files/ENCFF609DVV/@@download/ENCFF609DVV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF108IIU bigBed narrowPeak optimal idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF925MHB 97525 ENCODE Processing Pipeline 522b7a785ec74808ab5eb46dce53d64f https://www.encodeproject.org/files/ENCFF108IIU/@@download/ENCFF108IIU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EEE fastq reads ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 827022291 Michael Snyder, Stanford ac9fc6435c00094b45f117e17abbbc58 SRA:SRR5111851 https://www.encodeproject.org/files/ENCFF002EEE/@@download/ENCFF002EEE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EEI fastq reads ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 1 36 single-ended 983521158 Michael Snyder, Stanford 33c44d14baeb7e7fd3d03abfa5079a23 SRA:SRR5111852 https://www.encodeproject.org/files/ENCFF002EEI/@@download/ENCFF002EEI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF707DVP bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEE, ENCFF807MUK 681503456 ENCODE Processing Pipeline 282af5c3477638886bacfcc0166486ae https://www.encodeproject.org/files/ENCFF707DVP/@@download/ENCFF707DVP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF729TUK bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002EEI, ENCFF807MUK 769830242 ENCODE Processing Pipeline 1380c0428e1571342261d1a1af5bf14a https://www.encodeproject.org/files/ENCFF729TUK/@@download/ENCFF729TUK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF843MLM bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 969099198 ENCODE Processing Pipeline de359bbe5f39dc3841572a9a2c8276ab https://www.encodeproject.org/files/ENCFF843MLM/@@download/ENCFF843MLM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF760MMN bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF671UIB 11306740 ENCODE Processing Pipeline c927aee9dda33440c62eb4643feae805 https://www.encodeproject.org/files/ENCFF760MMN/@@download/ENCFF760MMN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF138IOK bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 502680441 ENCODE Processing Pipeline 2f0155afc0c23f882eb6625322867421 https://www.encodeproject.org/files/ENCFF138IOK/@@download/ENCFF138IOK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF893YZB bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 937796395 ENCODE Processing Pipeline 2be218c1781408c42c023932242b575c https://www.encodeproject.org/files/ENCFF893YZB/@@download/ENCFF893YZB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF835EFY bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF729TUK, ENCFF879OQC 447939293 ENCODE Processing Pipeline effc4efad896dd4597bdd3d2d4ba9fdc https://www.encodeproject.org/files/ENCFF835EFY/@@download/ENCFF835EFY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF733QCO bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 393908005 ENCODE Processing Pipeline c5436961a8df215e18f37315216b8422 https://www.encodeproject.org/files/ENCFF733QCO/@@download/ENCFF733QCO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF196NEV bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF729TUK, ENCFF879OQC 4963186 ENCODE Processing Pipeline bc72f3c31d4c4930de1d951cb69f3c28 https://www.encodeproject.org/files/ENCFF196NEV/@@download/ENCFF196NEV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF126VUI bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF729TUK, ENCFF879OQC 515434639 ENCODE Processing Pipeline 53337b0bd7cd8fb6de22d4d1550b8405 https://www.encodeproject.org/files/ENCFF126VUI/@@download/ENCFF126VUI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF896GVG bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF196NEV 11096441 ENCODE Processing Pipeline d74a38fe10a7cca1281b2c06ecc5b78e https://www.encodeproject.org/files/ENCFF896GVG/@@download/ENCFF896GVG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF603ABN bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 4472627 ENCODE Processing Pipeline 81881c2eb3c994ca231224ff2b71f64a https://www.encodeproject.org/files/ENCFF603ABN/@@download/ENCFF603ABN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF518NJZ bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF603ABN 10857027 ENCODE Processing Pipeline bf2be4c03184a135cd746280d1043f5a https://www.encodeproject.org/files/ENCFF518NJZ/@@download/ENCFF518NJZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF671UIB bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 6136465 ENCODE Processing Pipeline 35579a6a058ce6955e06f44bea582a10 https://www.encodeproject.org/files/ENCFF671UIB/@@download/ENCFF671UIB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF588IRF bam unfiltered alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002EEI, ENCFF643CGH 1195391794 ENCODE Processing Pipeline c55aa0c514f64d81e05e2b4a82eac36c https://www.encodeproject.org/files/ENCFF588IRF/@@download/ENCFF588IRF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF351YEW bam unfiltered alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEE, ENCFF643CGH 1020235978 ENCODE Processing Pipeline 8defd81ea88900880ab289bc4cb2613d https://www.encodeproject.org/files/ENCFF351YEW/@@download/ENCFF351YEW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF799RPS bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002EEI, ENCFF643CGH 769223121 ENCODE Processing Pipeline e22e5d3c53a9dfd5c41df292d8ed835a https://www.encodeproject.org/files/ENCFF799RPS/@@download/ENCFF799RPS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF576EDK bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEE, ENCFF643CGH 681034922 ENCODE Processing Pipeline a7a96e2afa6873e71aa7c8ce480204e3 https://www.encodeproject.org/files/ENCFF576EDK/@@download/ENCFF576EDK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF897VWO bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF576EDK 575978256 ENCODE Processing Pipeline 8acc4a09ca480abe995176bb8a2e2777 https://www.encodeproject.org/files/ENCFF897VWO/@@download/ENCFF897VWO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF512BRW bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF577FNG, ENCFF799RPS 510296578 ENCODE Processing Pipeline 4c576002b30592ab9525b5dc0ca2497e https://www.encodeproject.org/files/ENCFF512BRW/@@download/ENCFF512BRW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF380XVH bigWig signal p-value ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF156FED, ENCFF576EDK, ENCFF577FNG, ENCFF799RPS 1077702489 ENCODE Processing Pipeline d383b47286d9c712740e2e6d21332dda https://www.encodeproject.org/files/ENCFF380XVH/@@download/ENCFF380XVH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF234DNB bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF576EDK 387423870 ENCODE Processing Pipeline 9459d34548968e66b7c45d119ab07510 https://www.encodeproject.org/files/ENCFF234DNB/@@download/ENCFF234DNB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF508MWG bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF577FNG, ENCFF799RPS 450752025 ENCODE Processing Pipeline 61e5485f46a1cddec770376983cd3b82 https://www.encodeproject.org/files/ENCFF508MWG/@@download/ENCFF508MWG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF387BYC bigWig fold change over control ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF156FED, ENCFF576EDK, ENCFF577FNG, ENCFF799RPS 937064211 ENCODE Processing Pipeline 029d611c8e8c23cc10cde59dab0d62c6 https://www.encodeproject.org/files/ENCFF387BYC/@@download/ENCFF387BYC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF183SEC bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF576EDK 4267076 ENCODE Processing Pipeline 0a40a4133c1a9c2aae902a2c88388f6b https://www.encodeproject.org/files/ENCFF183SEC/@@download/ENCFF183SEC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF120AAX bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF577FNG, ENCFF799RPS 4686761 ENCODE Processing Pipeline d6992f62b5549aee9691233e824010d2 https://www.encodeproject.org/files/ENCFF120AAX/@@download/ENCFF120AAX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF653TOA bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF183SEC 10645919 ENCODE Processing Pipeline ce149692d840d0293f90f8ce3ae9c4c9 https://www.encodeproject.org/files/ENCFF653TOA/@@download/ENCFF653TOA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF443GTS bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 ENCFF120AAX 10970844 ENCODE Processing Pipeline 02f8c826ad2b95eda4f6024878643179 https://www.encodeproject.org/files/ENCFF443GTS/@@download/ENCFF443GTS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF440WDS bigBed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF274WAV 11321997 ENCODE Processing Pipeline 74826e3454b62078c2efdfa539e2c5df https://www.encodeproject.org/files/ENCFF440WDS/@@download/ENCFF440WDS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF179GMV bed narrowPeak conservative idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF120AAX, ENCFF183SEC, ENCFF274WAV, ENCFF419RSJ 17075 ENCODE Processing Pipeline becb48a377e025017d3900afa248223f https://www.encodeproject.org/files/ENCFF179GMV/@@download/ENCFF179GMV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF274WAV bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF156FED, ENCFF576EDK, ENCFF577FNG, ENCFF799RPS 5919282 ENCODE Processing Pipeline 2a04fe2ed814b375771089eae8ec3d08 https://www.encodeproject.org/files/ENCFF274WAV/@@download/ENCFF274WAV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF632LHS bigBed narrowPeak conservative idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF179GMV 84580 ENCODE Processing Pipeline 0eaa7dd68c5393776efe2d73fae9dfc2 https://www.encodeproject.org/files/ENCFF632LHS/@@download/ENCFF632LHS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF797OWK bed narrowPeak optimal idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF120AAX, ENCFF183SEC, ENCFF274WAV, ENCFF419RSJ 25073 ENCODE Processing Pipeline 84185a6b0f28628215c2fd54a269237b https://www.encodeproject.org/files/ENCFF797OWK/@@download/ENCFF797OWK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF397KMG bigBed narrowPeak optimal idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF797OWK 98552 ENCODE Processing Pipeline c3f20d540d0a9bab349dc602a6063154 https://www.encodeproject.org/files/ENCFF397KMG/@@download/ENCFF397KMG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF392TKK bed narrowPeak optimal idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF001TDO, ENCFF196NEV, ENCFF603ABN, ENCFF671UIB 21050 ENCODE Processing Pipeline c3bda9e03d77f48fd2712a1af5c26a09 https://www.encodeproject.org/files/ENCFF392TKK/@@download/ENCFF392TKK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF054RBS bed narrowPeak conservative idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF001TDO, ENCFF196NEV, ENCFF603ABN, ENCFF671UIB 14326 ENCODE Processing Pipeline 2b767586df97e0ca28fcea7ab899d400 https://www.encodeproject.org/files/ENCFF054RBS/@@download/ENCFF054RBS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF518ZHA bigBed narrowPeak conservative idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF054RBS 66965 ENCODE Processing Pipeline 5f4ce1bcc88610db06e3a52c2f0e2909 https://www.encodeproject.org/files/ENCFF518ZHA/@@download/ENCFF518ZHA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF821WVM bigBed narrowPeak optimal idr thresholded peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1, 4 ENCFF392TKK 76241 ENCODE Processing Pipeline 712087e850710575774b5a5eefec8048 https://www.encodeproject.org/files/ENCFF821WVM/@@download/ENCFF821WVM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF201HJY fastq reads ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 1 76 single-ended 1982745894 Bradley Bernstein, Broad c484e347561cde525e7fb8fcfce74172 https://www.encodeproject.org/files/ENCFF201HJY/@@download/ENCFF201HJY.fastq.gz Illumina HiSeq 2500 /files/ENCFF451IDT/, /files/ENCFF643EHE/ released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF651KLA bam unfiltered alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF807MUK 2306713046 ENCODE Processing Pipeline 6c743b7d7c6239bb5b58421c40860af7 https://www.encodeproject.org/files/ENCFF651KLA/@@download/ENCFF651KLA.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF075KQC bam unfiltered alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF643CGH 2308335366 ENCODE Processing Pipeline 7bdc7721ebe3037bfc6eae33c75f8dd4 https://www.encodeproject.org/files/ENCFF075KQC/@@download/ENCFF075KQC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF992FMF bam alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF807MUK 1879711232 ENCODE Processing Pipeline 57c2cf3139e6e8c39230b8cc750fbd14 https://www.encodeproject.org/files/ENCFF992FMF/@@download/ENCFF992FMF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF549ZXF bam alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF643CGH 1886531229 ENCODE Processing Pipeline d81ad340e3a6ed0bf59f6487f2ee40c3 https://www.encodeproject.org/files/ENCFF549ZXF/@@download/ENCFF549ZXF.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF017NYS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF109YBE 216547 ENCODE Processing Pipeline 0a2b6f35e5fff81a6d2d2fc8829843b4 https://www.encodeproject.org/files/ENCFF017NYS/@@download/ENCFF017NYS.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF714MSZ bigWig fold change over control ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF142VHH, ENCFF549ZXF 964659111 ENCODE Processing Pipeline beb38a3b499f55f53dae19e741412b96 https://www.encodeproject.org/files/ENCFF714MSZ/@@download/ENCFF714MSZ.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF025OHW bigWig signal p-value ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 1024270457 ENCODE Processing Pipeline ef6ec9f32a14e284ed8cfedf2b13f94d https://www.encodeproject.org/files/ENCFF025OHW/@@download/ENCFF025OHW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF469ITO bed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 6473699 ENCODE Processing Pipeline d06c42930a297a00d8aafc6d927fa8ac https://www.encodeproject.org/files/ENCFF469ITO/@@download/ENCFF469ITO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF109YBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF001TDO, ENCFF469ITO 88155 ENCODE Processing Pipeline 4c6a7edd9fa2c986f8000b80e81fae7b https://www.encodeproject.org/files/ENCFF109YBE/@@download/ENCFF109YBE.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF449ZFX bigWig fold change over control ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 969023515 ENCODE Processing Pipeline c407ad4385a5263bad664727a3105258 https://www.encodeproject.org/files/ENCFF449ZFX/@@download/ENCFF449ZFX.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF211LWD bigBed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF469ITO 13441335 ENCODE Processing Pipeline fd8a4dd2adb9ac5048bcf2963460efcb https://www.encodeproject.org/files/ENCFF211LWD/@@download/ENCFF211LWD.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF595VZV bigWig signal p-value ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF142VHH, ENCFF549ZXF 809427678 ENCODE Processing Pipeline d0429a0592c478360bc2dc73b0b98865 https://www.encodeproject.org/files/ENCFF595VZV/@@download/ENCFF595VZV.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF449AYD bed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF142VHH, ENCFF549ZXF 6390526 ENCODE Processing Pipeline 28e4821a6f783eec6f2fe06e40dee44f https://www.encodeproject.org/files/ENCFF449AYD/@@download/ENCFF449AYD.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF277FXB bigBed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF449AYD 13457869 ENCODE Processing Pipeline b23bd7e69a9c33656120fda806a73de3 https://www.encodeproject.org/files/ENCFF277FXB/@@download/ENCFF277FXB.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF248JAL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF419RSJ, ENCFF449AYD 92393 ENCODE Processing Pipeline 77df56b21901637f423b554093099912 https://www.encodeproject.org/files/ENCFF248JAL/@@download/ENCFF248JAL.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF525XVF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF248JAL 222983 ENCODE Processing Pipeline da7dd77bca4f8c02b8bfa7de176760e1 https://www.encodeproject.org/files/ENCFF525XVF/@@download/ENCFF525XVF.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF605MPT fastq reads ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 448386592 Xiang-Dong Fu, UCSD 75777806cb5488eeaea5f96bcb2f39c4 SRA:SRR6214050 https://www.encodeproject.org/files/ENCFF605MPT/@@download/ENCFF605MPT.fastq.gz Illumina HiSeq 2500 /files/ENCFF510UAH/ released low read length, low read depth missing control alignments ENCFF233QNF fastq reads ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 446153500 Xiang-Dong Fu, UCSD 239f61dfe5835d168a11cf1d364a2cca SRA:SRR6214051 https://www.encodeproject.org/files/ENCFF233QNF/@@download/ENCFF233QNF.fastq.gz Illumina HiSeq 2500 /files/ENCFF092DDZ/ released low read length, low read depth missing control alignments ENCFF553UVH bam unfiltered alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF233QNF, ENCFF807MUK 627140518 ENCODE Processing Pipeline 8031c67a8eca0d7ff431837ddc4e7c1e https://www.encodeproject.org/files/ENCFF553UVH/@@download/ENCFF553UVH.bam hg19 released low read length, low read depth missing control alignments ENCFF308JUD bam unfiltered alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF605MPT, ENCFF643CGH 633295857 ENCODE Processing Pipeline 61e7a04d4f5f0be7aea815d7148e911b https://www.encodeproject.org/files/ENCFF308JUD/@@download/ENCFF308JUD.bam GRCh38 released low read length, low read depth missing control alignments ENCFF262KWU bam unfiltered alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF233QNF, ENCFF643CGH 628469382 ENCODE Processing Pipeline b0ecf30b4202696e42192971548a20de https://www.encodeproject.org/files/ENCFF262KWU/@@download/ENCFF262KWU.bam GRCh38 released low read length, low read depth missing control alignments ENCFF174JQR bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF605MPT, ENCFF807MUK 409127334 ENCODE Processing Pipeline ba896bbea206066fcc0a5ff9161aa631 https://www.encodeproject.org/files/ENCFF174JQR/@@download/ENCFF174JQR.bam hg19 released low read length, low read depth missing control alignments ENCFF679POE bam unfiltered alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF605MPT, ENCFF807MUK 632053500 ENCODE Processing Pipeline 6afdcd3e62b1e89ca0fe55eca3b1ce7d https://www.encodeproject.org/files/ENCFF679POE/@@download/ENCFF679POE.bam hg19 released low read length, low read depth missing control alignments ENCFF455VOE bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF233QNF, ENCFF807MUK 405743468 ENCODE Processing Pipeline 09379e98854321321805ac69b47f4734 https://www.encodeproject.org/files/ENCFF455VOE/@@download/ENCFF455VOE.bam hg19 released low read length, low read depth missing control alignments ENCFF525JGC bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF605MPT, ENCFF643CGH 408496479 ENCODE Processing Pipeline 052d26541a14bd1be96d4e4148bcac5b https://www.encodeproject.org/files/ENCFF525JGC/@@download/ENCFF525JGC.bam GRCh38 released low read length, low read depth missing control alignments ENCFF031YZL bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF233QNF, ENCFF643CGH 405162587 ENCODE Processing Pipeline 8260da507507ca968bb0718c457ddcc0 https://www.encodeproject.org/files/ENCFF031YZL/@@download/ENCFF031YZL.bam GRCh38 released low read length, low read depth missing control alignments ENCFF978MWQ bigWig signal p-value ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF174JQR, ENCFF455VOE, ENCFF508DBG, ENCFF572OMD 833775991 ENCODE Processing Pipeline 2a1e31ef98dc5db21f0bbfb87f136c55 https://www.encodeproject.org/files/ENCFF978MWQ/@@download/ENCFF978MWQ.bigWig hg19 released low read length, low read depth missing control alignments ENCFF940BFH bigWig signal p-value ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF174JQR, ENCFF508DBG 448362427 ENCODE Processing Pipeline 2ca22dc60c9a1ac71bad62f4eaa0698f https://www.encodeproject.org/files/ENCFF940BFH/@@download/ENCFF940BFH.bigWig hg19 released low read length, low read depth missing control alignments ENCFF106XSS bigWig signal p-value ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF455VOE, ENCFF572OMD 420929908 ENCODE Processing Pipeline 0d215605e0315ee93e8453a7bf493a15 https://www.encodeproject.org/files/ENCFF106XSS/@@download/ENCFF106XSS.bigWig hg19 released low read length, low read depth missing control alignments ENCFF479MVC bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF455VOE, ENCFF572OMD 5043027 ENCODE Processing Pipeline faae7e59d41b29ecf813dcbfe2b03a9a https://www.encodeproject.org/files/ENCFF479MVC/@@download/ENCFF479MVC.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF547CND bigBed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF479MVC 12852203 ENCODE Processing Pipeline 6e73e71cfc05ce818ddf956460dfb459 https://www.encodeproject.org/files/ENCFF547CND/@@download/ENCFF547CND.bigBed hg19 released low read length, low read depth missing control alignments ENCFF647FZH bigBed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF882YQN 13194256 ENCODE Processing Pipeline c5f300833500768a65151c0c3b76eafa https://www.encodeproject.org/files/ENCFF647FZH/@@download/ENCFF647FZH.bigBed hg19 released low read length, low read depth missing control alignments ENCFF094CAC bigWig fold change over control ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF174JQR, ENCFF508DBG 296878590 ENCODE Processing Pipeline b4fdba7a750ece40aa1c4a7e94cf93b6 https://www.encodeproject.org/files/ENCFF094CAC/@@download/ENCFF094CAC.bigWig hg19 released low read length, low read depth missing control alignments ENCFF856RHH bigWig fold change over control ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF455VOE, ENCFF572OMD 284736058 ENCODE Processing Pipeline 5f1d62c0830343d291e5dbdbb910864b https://www.encodeproject.org/files/ENCFF856RHH/@@download/ENCFF856RHH.bigWig hg19 released low read length, low read depth missing control alignments ENCFF882YQN bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF174JQR, ENCFF455VOE, ENCFF508DBG, ENCFF572OMD 6454217 ENCODE Processing Pipeline 62266859884ab87788c171984196e730 https://www.encodeproject.org/files/ENCFF882YQN/@@download/ENCFF882YQN.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF913LYD bigWig fold change over control ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF174JQR, ENCFF455VOE, ENCFF508DBG, ENCFF572OMD 680436676 ENCODE Processing Pipeline 0fbaced302283deea6a3428afc3080fe https://www.encodeproject.org/files/ENCFF913LYD/@@download/ENCFF913LYD.bigWig hg19 released low read length, low read depth missing control alignments ENCFF631MDU bigBed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF921LEX 12985765 ENCODE Processing Pipeline 376194d04559c04c46e30600d2feceb9 https://www.encodeproject.org/files/ENCFF631MDU/@@download/ENCFF631MDU.bigBed hg19 released low read length, low read depth missing control alignments ENCFF694BIA bed narrowPeak optimal idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF479MVC, ENCFF882YQN, ENCFF921LEX 86416 ENCODE Processing Pipeline 72a8e93e6ddf058b52d390f325564e50 https://www.encodeproject.org/files/ENCFF694BIA/@@download/ENCFF694BIA.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF921LEX bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF174JQR, ENCFF508DBG 5337244 ENCODE Processing Pipeline dda5c613676ab4d729d96d4c0e99c2a9 https://www.encodeproject.org/files/ENCFF921LEX/@@download/ENCFF921LEX.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF588TAS bed narrowPeak conservative idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF479MVC, ENCFF882YQN, ENCFF921LEX 76985 ENCODE Processing Pipeline 2d471554dd48a7534b18fb02fe4e1b4d https://www.encodeproject.org/files/ENCFF588TAS/@@download/ENCFF588TAS.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF830KVD bigBed narrowPeak optimal idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF694BIA 203973 ENCODE Processing Pipeline bac0bc2a65b03ec284d850838562e75b https://www.encodeproject.org/files/ENCFF830KVD/@@download/ENCFF830KVD.bigBed hg19 released low read length, low read depth missing control alignments ENCFF895WYA bigBed narrowPeak conservative idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF588TAS 189967 ENCODE Processing Pipeline f9e73cb98d33bc4c8822820e79daa8a3 https://www.encodeproject.org/files/ENCFF895WYA/@@download/ENCFF895WYA.bigBed hg19 released low read length, low read depth missing control alignments ENCFF388FQP bigWig signal p-value ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF031YZL, ENCFF525JGC 929651274 ENCODE Processing Pipeline 28b598e95c05988c3e692c1ed362dadc https://www.encodeproject.org/files/ENCFF388FQP/@@download/ENCFF388FQP.bigWig GRCh38 released low read length, low read depth missing control alignments ENCFF193MWP bigWig signal p-value ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF525JGC 500913526 ENCODE Processing Pipeline d26062e6dd956f9c604e4acc93c34200 https://www.encodeproject.org/files/ENCFF193MWP/@@download/ENCFF193MWP.bigWig GRCh38 released low read length, low read depth missing control alignments ENCFF392GTZ bigWig signal p-value ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF031YZL 456542258 ENCODE Processing Pipeline f25756e02ce21305b18fa9a8d398e82f https://www.encodeproject.org/files/ENCFF392GTZ/@@download/ENCFF392GTZ.bigWig GRCh38 released low read length, low read depth missing control alignments ENCFF833XMU bigWig fold change over control ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF031YZL 281802091 ENCODE Processing Pipeline 94dacf5a2cca6f1d39c3cbc47b7f7594 https://www.encodeproject.org/files/ENCFF833XMU/@@download/ENCFF833XMU.bigWig GRCh38 released low read length, low read depth missing control alignments ENCFF127JTM bigWig fold change over control ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF525JGC 303673849 ENCODE Processing Pipeline 4ee06c0e8e9a915f47b3c5e4bbd3b454 https://www.encodeproject.org/files/ENCFF127JTM/@@download/ENCFF127JTM.bigWig GRCh38 released low read length, low read depth missing control alignments ENCFF109FPX bigWig fold change over control ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF031YZL, ENCFF525JGC 672529823 ENCODE Processing Pipeline ddcdb7fdabfed4c0fa32ba34d9e2a0ac https://www.encodeproject.org/files/ENCFF109FPX/@@download/ENCFF109FPX.bigWig GRCh38 released low read length, low read depth missing control alignments ENCFF432KAK bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF525JGC 5309261 ENCODE Processing Pipeline a214b85a5bcc4a89039c3dfd7f7b082d https://www.encodeproject.org/files/ENCFF432KAK/@@download/ENCFF432KAK.bed.gz GRCh38 released low read length, low read depth missing control alignments ENCFF814MDL bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF031YZL 5034740 ENCODE Processing Pipeline 9b8285072e7507e8bd212609258df51d https://www.encodeproject.org/files/ENCFF814MDL/@@download/ENCFF814MDL.bed.gz GRCh38 released low read length, low read depth missing control alignments ENCFF167JUS bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF031YZL, ENCFF525JGC 6446888 ENCODE Processing Pipeline 5af07886449c98c598d090d9c72675c4 https://www.encodeproject.org/files/ENCFF167JUS/@@download/ENCFF167JUS.bed.gz GRCh38 released low read length, low read depth missing control alignments ENCFF888TCK bed narrowPeak conservative idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF167JUS, ENCFF419RSJ, ENCFF432KAK, ENCFF814MDL 77088 ENCODE Processing Pipeline 365d981882b9ddbc6b0325758b302dc7 https://www.encodeproject.org/files/ENCFF888TCK/@@download/ENCFF888TCK.bed.gz GRCh38 released low read length, low read depth missing control alignments ENCFF701HCA bigBed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF432KAK 12971900 ENCODE Processing Pipeline 2328b83a07f43b5d86a9a13fa5368567 https://www.encodeproject.org/files/ENCFF701HCA/@@download/ENCFF701HCA.bigBed GRCh38 released low read length, low read depth missing control alignments ENCFF249ABH bigBed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF814MDL 12867677 ENCODE Processing Pipeline f68b4d85ef5a64d8c2469c3e0bc362fc https://www.encodeproject.org/files/ENCFF249ABH/@@download/ENCFF249ABH.bigBed GRCh38 released low read length, low read depth missing control alignments ENCFF580MSM bigBed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF167JUS 13212161 ENCODE Processing Pipeline 2ee19a50acada0121d002c02da4ac528 https://www.encodeproject.org/files/ENCFF580MSM/@@download/ENCFF580MSM.bigBed GRCh38 released low read length, low read depth missing control alignments ENCFF323HSJ bigBed narrowPeak conservative idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF888TCK 190941 ENCODE Processing Pipeline 735b5c7c3f6a696477dba7d099c95b26 https://www.encodeproject.org/files/ENCFF323HSJ/@@download/ENCFF323HSJ.bigBed GRCh38 released low read length, low read depth missing control alignments ENCFF773HPT bigBed narrowPeak optimal idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF917HXV 202281 ENCODE Processing Pipeline d14cabb42a523bdbfbd0563738e204d7 https://www.encodeproject.org/files/ENCFF773HPT/@@download/ENCFF773HPT.bigBed GRCh38 released low read length, low read depth missing control alignments ENCFF917HXV bed narrowPeak optimal idr thresholded peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF167JUS, ENCFF419RSJ, ENCFF432KAK, ENCFF814MDL 84401 ENCODE Processing Pipeline b7a99a8e16742bcfcb11974113622d69 https://www.encodeproject.org/files/ENCFF917HXV/@@download/ENCFF917HXV.bed.gz GRCh38 released low read length, low read depth missing control alignments ENCFF755CGW fastq reads ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 1 101 paired-ended 1 ENCFF513LZV 3207129156 Michael Snyder, Stanford 472f73ec33a748709f5cecd813074fbc SRA:SRR5111975 https://www.encodeproject.org/files/ENCFF755CGW/@@download/ENCFF755CGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF726QBO fastq reads ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 1 101 paired-ended 1 ENCFF720SPJ 2786437178 Michael Snyder, Stanford ae5e59d3af46e273851f49c514b00a95 SRA:SRR5111976 https://www.encodeproject.org/files/ENCFF726QBO/@@download/ENCFF726QBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF513LZV fastq reads ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 1 101 paired-ended 2 ENCFF755CGW 3232504145 Michael Snyder, Stanford 5a4592270edd0b250e113361933264b2 SRA:SRR5111975 https://www.encodeproject.org/files/ENCFF513LZV/@@download/ENCFF513LZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF720SPJ fastq reads ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 1 101 paired-ended 2 ENCFF726QBO 2812405318 Michael Snyder, Stanford 51a7862e2d86eb6eade2fb60dd66014c SRA:SRR5111976 https://www.encodeproject.org/files/ENCFF720SPJ/@@download/ENCFF720SPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF471IGS bam unfiltered alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 101 ENCFF643CGH, ENCFF720SPJ, ENCFF726QBO 6214020073 ENCODE Processing Pipeline d82adb02a95c175574e8f0dc2cd97b25 https://www.encodeproject.org/files/ENCFF471IGS/@@download/ENCFF471IGS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF797VUR bam unfiltered alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 101 ENCFF720SPJ, ENCFF726QBO, ENCFF807MUK 6206093917 ENCODE Processing Pipeline 0ede28dce5bf1d29b9ebcbec7b0952e5 https://www.encodeproject.org/files/ENCFF797VUR/@@download/ENCFF797VUR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF016OAN bam unfiltered alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 101 ENCFF513LZV, ENCFF643CGH, ENCFF755CGW 7074588110 ENCODE Processing Pipeline 4c163bfcf64bb53e14fd2d94b2840d79 https://www.encodeproject.org/files/ENCFF016OAN/@@download/ENCFF016OAN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF013PDY bam unfiltered alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 101 ENCFF513LZV, ENCFF755CGW, ENCFF807MUK 7066158549 ENCODE Processing Pipeline 6ada8cc45e3988426a6a377e177a981e https://www.encodeproject.org/files/ENCFF013PDY/@@download/ENCFF013PDY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF226EFM bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 101 ENCFF643CGH, ENCFF720SPJ, ENCFF726QBO 5276153939 ENCODE Processing Pipeline 97d3bc90aa7e60d0094445362a986445 https://www.encodeproject.org/files/ENCFF226EFM/@@download/ENCFF226EFM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF742IEI bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 101 ENCFF513LZV, ENCFF643CGH, ENCFF755CGW 5982758532 ENCODE Processing Pipeline 8b97dce9fe891da2203e23c82e5575a3 https://www.encodeproject.org/files/ENCFF742IEI/@@download/ENCFF742IEI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF883INN bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 101 ENCFF513LZV, ENCFF755CGW, ENCFF807MUK 5980597572 ENCODE Processing Pipeline 673cdc09711fc0b4a7e89f91de32d03e https://www.encodeproject.org/files/ENCFF883INN/@@download/ENCFF883INN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF937IZT bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 101 ENCFF720SPJ, ENCFF726QBO, ENCFF807MUK 5273607966 ENCODE Processing Pipeline 602fdde81eeaf4a65852fcd0800c1e65 https://www.encodeproject.org/files/ENCFF937IZT/@@download/ENCFF937IZT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF773DUY bigWig signal p-value ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF742IEI 1256933417 ENCODE Processing Pipeline 23ff96a8e5317200d1cf7130593425a3 https://www.encodeproject.org/files/ENCFF773DUY/@@download/ENCFF773DUY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF512XMF bigWig signal p-value ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF226EFM 1472313511 ENCODE Processing Pipeline 36022899fc24ad26c0bca78492ab0194 https://www.encodeproject.org/files/ENCFF512XMF/@@download/ENCFF512XMF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF171USU bigWig fold change over control ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF742IEI 1552504428 ENCODE Processing Pipeline bea28860b57c86205da25c9d18fee336 https://www.encodeproject.org/files/ENCFF171USU/@@download/ENCFF171USU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF618ZYI bigWig signal p-value ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF226EFM, ENCFF742IEI 1975719306 ENCODE Processing Pipeline 19f317e921e86da0b2abaccc8fa72788 https://www.encodeproject.org/files/ENCFF618ZYI/@@download/ENCFF618ZYI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF422RNG bigWig fold change over control ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF226EFM 1439765660 ENCODE Processing Pipeline e61c403ecf9f6031157228092104ca6a https://www.encodeproject.org/files/ENCFF422RNG/@@download/ENCFF422RNG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF390DEF bigWig fold change over control ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF226EFM, ENCFF742IEI 2116406439 ENCODE Processing Pipeline d67076d2d5817c53c8acf5f8bfc61b60 https://www.encodeproject.org/files/ENCFF390DEF/@@download/ENCFF390DEF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF050VVU bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF742IEI 6827188 ENCODE Processing Pipeline aaa2e910fc7e437aedc0486f52d52fa5 https://www.encodeproject.org/files/ENCFF050VVU/@@download/ENCFF050VVU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF175CGV bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF226EFM 6552609 ENCODE Processing Pipeline 1a66fe7fb52cd3f70cdb9e9f86e23342 https://www.encodeproject.org/files/ENCFF175CGV/@@download/ENCFF175CGV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF652HBV bed narrowPeak optimal idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF050VVU, ENCFF175CGV, ENCFF419RSJ, ENCFF808NJQ 112345 ENCODE Processing Pipeline f8cbcb2e4eda5c2a19d985eacd06537e https://www.encodeproject.org/files/ENCFF652HBV/@@download/ENCFF652HBV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF809EGU bed narrowPeak conservative idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF050VVU, ENCFF175CGV, ENCFF419RSJ, ENCFF808NJQ 79740 ENCODE Processing Pipeline 605f52b912af7941ce082b8c7eb71759 https://www.encodeproject.org/files/ENCFF809EGU/@@download/ENCFF809EGU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF388DDV bigBed narrowPeak optimal idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF652HBV 255400 ENCODE Processing Pipeline 69c6e3e07230ca74b1af495fdce0be52 https://www.encodeproject.org/files/ENCFF388DDV/@@download/ENCFF388DDV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF808NJQ bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF226EFM, ENCFF742IEI 7173614 ENCODE Processing Pipeline c509104e864f0cfbcd1e310e5fdc7bb2 https://www.encodeproject.org/files/ENCFF808NJQ/@@download/ENCFF808NJQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF314DFP bigBed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF808NJQ 13160504 ENCODE Processing Pipeline a410ac69d39a47e9b85de94e0912eb7e https://www.encodeproject.org/files/ENCFF314DFP/@@download/ENCFF314DFP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF715FXR bigBed narrowPeak conservative idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF809EGU 204686 ENCODE Processing Pipeline f0fcd10b5551c9060f4276d9d0c4a454 https://www.encodeproject.org/files/ENCFF715FXR/@@download/ENCFF715FXR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF841WKP bigBed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF050VVU 13318069 ENCODE Processing Pipeline ffe2a47e72f0d91347d383eedb29bf5f https://www.encodeproject.org/files/ENCFF841WKP/@@download/ENCFF841WKP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF753SYY bigBed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF175CGV 11254317 ENCODE Processing Pipeline 738f4503639c10bc3f81d5a42feb7039 https://www.encodeproject.org/files/ENCFF753SYY/@@download/ENCFF753SYY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF449BJG bigWig signal p-value ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF883INN 1369910565 ENCODE Processing Pipeline 07fd6581faf9d6f094061cdd43c15dc9 https://www.encodeproject.org/files/ENCFF449BJG/@@download/ENCFF449BJG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF191XCG bigWig fold change over control ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF883INN 1571627965 ENCODE Processing Pipeline 55bfb470876e74de1fd714483b3a431c https://www.encodeproject.org/files/ENCFF191XCG/@@download/ENCFF191XCG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF116USN bigBed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF790HUQ 13146212 ENCODE Processing Pipeline 0787d912f6c1e93400bd8863e4903f1e https://www.encodeproject.org/files/ENCFF116USN/@@download/ENCFF116USN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF742QUJ bigWig fold change over control ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF883INN, ENCFF937IZT 2095045545 ENCODE Processing Pipeline 49f0c84f874103af563c0ed144539d21 https://www.encodeproject.org/files/ENCFF742QUJ/@@download/ENCFF742QUJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF790HUQ bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF883INN, ENCFF937IZT 7171565 ENCODE Processing Pipeline 288ff0bcd9e54502097cfbf115ef8852 https://www.encodeproject.org/files/ENCFF790HUQ/@@download/ENCFF790HUQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF362UPD bigBed narrowPeak optimal idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF026FRV 251801 ENCODE Processing Pipeline db38741fd35cb646a36a21341883f464 https://www.encodeproject.org/files/ENCFF362UPD/@@download/ENCFF362UPD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF404CXM bigWig signal p-value ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF937IZT 1491971586 ENCODE Processing Pipeline 4179fa64e6f638e4a17cadf97bd0eaa3 https://www.encodeproject.org/files/ENCFF404CXM/@@download/ENCFF404CXM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF203CSF bigBed narrowPeak conservative idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF510BWI 204503 ENCODE Processing Pipeline fe3344bcdd4abbe98873aca49c757e5a https://www.encodeproject.org/files/ENCFF203CSF/@@download/ENCFF203CSF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF573OSI bigWig signal p-value ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF883INN, ENCFF937IZT 1955883494 ENCODE Processing Pipeline 8ac14584de61291cb071eb7860e99f08 https://www.encodeproject.org/files/ENCFF573OSI/@@download/ENCFF573OSI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF088NTX bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF883INN 6828500 ENCODE Processing Pipeline 04ed6bca9c371158fb646a9bffd2e777 https://www.encodeproject.org/files/ENCFF088NTX/@@download/ENCFF088NTX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF178SED bigWig fold change over control ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF937IZT 1483506057 ENCODE Processing Pipeline 8a3a60b2f5d5c45927006ce3abe72307 https://www.encodeproject.org/files/ENCFF178SED/@@download/ENCFF178SED.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF630COY bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF937IZT 6553076 ENCODE Processing Pipeline 33d5c35d81b522701fc3aff90be77994 https://www.encodeproject.org/files/ENCFF630COY/@@download/ENCFF630COY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF733HXZ bigBed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF088NTX 13296167 ENCODE Processing Pipeline b81fa01820e64bbce5fbb82ba03f35f9 https://www.encodeproject.org/files/ENCFF733HXZ/@@download/ENCFF733HXZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF869GVX bigBed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF630COY 11237549 ENCODE Processing Pipeline 3e47f10fd902753f45d26a7b2bb3a991 https://www.encodeproject.org/files/ENCFF869GVX/@@download/ENCFF869GVX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF510BWI bed narrowPeak conservative idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF001TDO, ENCFF088NTX, ENCFF630COY, ENCFF790HUQ 80266 ENCODE Processing Pipeline 353ebfa3b03023f484d5dd210284b4c0 https://www.encodeproject.org/files/ENCFF510BWI/@@download/ENCFF510BWI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF026FRV bed narrowPeak optimal idr thresholded peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1, 2 ENCFF001TDO, ENCFF088NTX, ENCFF630COY, ENCFF790HUQ 110500 ENCODE Processing Pipeline 4deb8ee86eafa2b3832894a13c4b552a https://www.encodeproject.org/files/ENCFF026FRV/@@download/ENCFF026FRV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF168WHE fastq reads ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF546URX 3310026270 Michael Snyder, Stanford 6fa564b7afa598ac6d9f6837d17100cf SRA:SRR6214407 https://www.encodeproject.org/files/ENCFF168WHE/@@download/ENCFF168WHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF546URX fastq reads ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF168WHE 3249993100 Michael Snyder, Stanford df87b358db912c59888eb9669c0f5c72 SRA:SRR6214407 https://www.encodeproject.org/files/ENCFF546URX/@@download/ENCFF546URX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF681LCG fastq reads ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF871JTS 2932928664 Michael Snyder, Stanford 5c3ebdf2ed5dec02aeec5de14f1c4e4f SRA:SRR6214408 https://www.encodeproject.org/files/ENCFF681LCG/@@download/ENCFF681LCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF871JTS fastq reads ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF681LCG 2885906599 Michael Snyder, Stanford 946eb655d5ceadca9d47f6dd4f2e424b SRA:SRR6214408 https://www.encodeproject.org/files/ENCFF871JTS/@@download/ENCFF871JTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF127ORV bam unfiltered alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF681LCG, ENCFF807MUK, ENCFF871JTS 5892103239 ENCODE Processing Pipeline 003cad3612beedfad7b0bb0786229cfa https://www.encodeproject.org/files/ENCFF127ORV/@@download/ENCFF127ORV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF489VWP bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF681LCG, ENCFF807MUK, ENCFF871JTS 5065740515 ENCODE Processing Pipeline 72e3a1b1146fd2821169f70c7367aa30 https://www.encodeproject.org/files/ENCFF489VWP/@@download/ENCFF489VWP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF422WGT bam unfiltered alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF681LCG, ENCFF871JTS 5900356938 ENCODE Processing Pipeline 4262b5b74afc438f183b89b642d280ad https://www.encodeproject.org/files/ENCFF422WGT/@@download/ENCFF422WGT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF894YZH bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF681LCG, ENCFF871JTS 5067675520 ENCODE Processing Pipeline 31ff21312ae630d64f9e62a256186242 https://www.encodeproject.org/files/ENCFF894YZH/@@download/ENCFF894YZH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF485DAZ bam unfiltered alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF168WHE, ENCFF546URX, ENCFF643CGH 6583232039 ENCODE Processing Pipeline 4bc8f2dc601043140e7ac5189bceb997 https://www.encodeproject.org/files/ENCFF485DAZ/@@download/ENCFF485DAZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF921WCK bam unfiltered alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF168WHE, ENCFF546URX, ENCFF807MUK 6575814409 ENCODE Processing Pipeline 031897b717a207519204ca239e6561c9 https://www.encodeproject.org/files/ENCFF921WCK/@@download/ENCFF921WCK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF460FTQ bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF168WHE, ENCFF546URX, ENCFF643CGH 5592501218 ENCODE Processing Pipeline 10b876ca86473d80e800896087529bb7 https://www.encodeproject.org/files/ENCFF460FTQ/@@download/ENCFF460FTQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF075MEV bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF168WHE, ENCFF546URX, ENCFF807MUK 5589155723 ENCODE Processing Pipeline 518d0d8967980a59065fb9f20279e4c5 https://www.encodeproject.org/files/ENCFF075MEV/@@download/ENCFF075MEV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF454ETP bigWig signal p-value ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF489VWP 1513506770 ENCODE Processing Pipeline ca2abccf249499fbdd60b214584ad3e7 https://www.encodeproject.org/files/ENCFF454ETP/@@download/ENCFF454ETP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF585VIB bigWig signal p-value ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF075MEV 1368022950 ENCODE Processing Pipeline 8644b63bfa95ab7815a0d493837f22a5 https://www.encodeproject.org/files/ENCFF585VIB/@@download/ENCFF585VIB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF866KIG bigWig signal p-value ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF075MEV, ENCFF489VWP 2010977135 ENCODE Processing Pipeline acc146c36b8af90a5e17217d40a37bb4 https://www.encodeproject.org/files/ENCFF866KIG/@@download/ENCFF866KIG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF242XNC bigWig fold change over control ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF489VWP 1473676204 ENCODE Processing Pipeline 6aa456ecbcff8d23596ac95a83fb62b6 https://www.encodeproject.org/files/ENCFF242XNC/@@download/ENCFF242XNC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF958ACT bigWig fold change over control ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF075MEV 1558772823 ENCODE Processing Pipeline 8bd2df53baffb0beab2d31b9be1a413c https://www.encodeproject.org/files/ENCFF958ACT/@@download/ENCFF958ACT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF975MXQ bigWig fold change over control ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF075MEV, ENCFF489VWP 2096616902 ENCODE Processing Pipeline 0c875e475b436df0f06a532d0d739c0d https://www.encodeproject.org/files/ENCFF975MXQ/@@download/ENCFF975MXQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF399MQT bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF489VWP 6686678 ENCODE Processing Pipeline 902a07f60d5ea4c5cf59b0b3f59777da https://www.encodeproject.org/files/ENCFF399MQT/@@download/ENCFF399MQT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF644IGZ bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF075MEV 6763227 ENCODE Processing Pipeline f121abfa76fc591f5968852a631f0ecb https://www.encodeproject.org/files/ENCFF644IGZ/@@download/ENCFF644IGZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF687KKC bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF075MEV, ENCFF489VWP 7163952 ENCODE Processing Pipeline 9f3cb948599a336da60c976d0c5fb711 https://www.encodeproject.org/files/ENCFF687KKC/@@download/ENCFF687KKC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF587GDB bigBed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF399MQT 11169287 ENCODE Processing Pipeline d1392cf275c1fba2060ff036b587bc8d https://www.encodeproject.org/files/ENCFF587GDB/@@download/ENCFF587GDB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF271YAA bed narrowPeak conservative idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF399MQT, ENCFF644IGZ, ENCFF687KKC 48763 ENCODE Processing Pipeline 25236c3ff88657439a5eff7384a1250d https://www.encodeproject.org/files/ENCFF271YAA/@@download/ENCFF271YAA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF730QUJ bigBed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF644IGZ 11199079 ENCODE Processing Pipeline 19318036f4b80e4a58f48b15207fcdb3 https://www.encodeproject.org/files/ENCFF730QUJ/@@download/ENCFF730QUJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF272LEO bigBed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF687KKC 11071800 ENCODE Processing Pipeline 1bcd684b44cc81b2b412b1dba45489eb https://www.encodeproject.org/files/ENCFF272LEO/@@download/ENCFF272LEO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF442AEI bigBed narrowPeak optimal idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF120RXH 165831 ENCODE Processing Pipeline 0866fdf18f68f76898c8e097002f7403 https://www.encodeproject.org/files/ENCFF442AEI/@@download/ENCFF442AEI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF482TZT bigBed narrowPeak conservative idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF271YAA 134678 ENCODE Processing Pipeline 3d4b0de3a5459262fd01e4b6562d8bc6 https://www.encodeproject.org/files/ENCFF482TZT/@@download/ENCFF482TZT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF120RXH bed narrowPeak optimal idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF399MQT, ENCFF644IGZ, ENCFF687KKC 71130 ENCODE Processing Pipeline 1670e6c66f439c2af2a90d78663ba775 https://www.encodeproject.org/files/ENCFF120RXH/@@download/ENCFF120RXH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF430SQO bigWig signal p-value ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF894YZH 1398360383 ENCODE Processing Pipeline 68ebe4336aef7b85f7ebe828c87ce72c https://www.encodeproject.org/files/ENCFF430SQO/@@download/ENCFF430SQO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF946UPN bigWig signal p-value ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF460FTQ 1279442633 ENCODE Processing Pipeline 1494becf54efd99794b89b4c54909f1a https://www.encodeproject.org/files/ENCFF946UPN/@@download/ENCFF946UPN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF960LKB bigWig signal p-value ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF460FTQ, ENCFF894YZH 2012755486 ENCODE Processing Pipeline 2480fcce89c1c8bbf138d218941dd4cf https://www.encodeproject.org/files/ENCFF960LKB/@@download/ENCFF960LKB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF062CBQ bigWig fold change over control ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF894YZH 1487419865 ENCODE Processing Pipeline c2c5991a857133e61b1237bc462d4a0c https://www.encodeproject.org/files/ENCFF062CBQ/@@download/ENCFF062CBQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF918QYE bigWig fold change over control ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF460FTQ 1539671468 ENCODE Processing Pipeline 10f43120d8f8f32ce8c663a36cb49c3c https://www.encodeproject.org/files/ENCFF918QYE/@@download/ENCFF918QYE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF352ABL bigWig fold change over control ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF460FTQ, ENCFF894YZH 2096887713 ENCODE Processing Pipeline 99006579f3d51b3276d1fed72194131f https://www.encodeproject.org/files/ENCFF352ABL/@@download/ENCFF352ABL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF527RRN bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF894YZH 6687640 ENCODE Processing Pipeline 0c67a8afcccec214a78a703e5c4e08c0 https://www.encodeproject.org/files/ENCFF527RRN/@@download/ENCFF527RRN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF750PHG bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF460FTQ 6763277 ENCODE Processing Pipeline 384b934ee24648b7dae6787691b2835d https://www.encodeproject.org/files/ENCFF750PHG/@@download/ENCFF750PHG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF831QXZ bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF460FTQ, ENCFF894YZH 7179514 ENCODE Processing Pipeline 2cc73ef59586d0b1b5c0c7c897c835c1 https://www.encodeproject.org/files/ENCFF831QXZ/@@download/ENCFF831QXZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF368LJJ bigBed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF527RRN 11180489 ENCODE Processing Pipeline bc81ec0d895b988dad99a11f4e437524 https://www.encodeproject.org/files/ENCFF368LJJ/@@download/ENCFF368LJJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF526SDZ bed narrowPeak conservative idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF527RRN, ENCFF750PHG, ENCFF831QXZ 49774 ENCODE Processing Pipeline 16fcfcaa5cf038c2202d07f1f1393249 https://www.encodeproject.org/files/ENCFF526SDZ/@@download/ENCFF526SDZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF880HLY bigBed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF750PHG 11209802 ENCODE Processing Pipeline 1b3dae5cad4b9564859efc63bea4f89f https://www.encodeproject.org/files/ENCFF880HLY/@@download/ENCFF880HLY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF993ZXK bigBed narrowPeak optimal idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF980EGS 165467 ENCODE Processing Pipeline 6faec29eb91e2bc5b323869dd8e6c0c0 https://www.encodeproject.org/files/ENCFF993ZXK/@@download/ENCFF993ZXK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF163AHT bigBed narrowPeak conservative idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF526SDZ 136685 ENCODE Processing Pipeline b68a98fe77aeff9fb89a7b0bca5c4d86 https://www.encodeproject.org/files/ENCFF163AHT/@@download/ENCFF163AHT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF871OWI bigBed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF831QXZ 11093644 ENCODE Processing Pipeline 1f72a67ad53af1a770df75e4caf70682 https://www.encodeproject.org/files/ENCFF871OWI/@@download/ENCFF871OWI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF980EGS bed narrowPeak optimal idr thresholded peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF527RRN, ENCFF750PHG, ENCFF831QXZ 70406 ENCODE Processing Pipeline 206f38127cb131916d3aed06153b4f4e https://www.encodeproject.org/files/ENCFF980EGS/@@download/ENCFF980EGS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF975GAK fastq reads ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 1431097442 Xiang-Dong Fu, UCSD c02e795dfffb5ca40f3085d8a9787b96 https://www.encodeproject.org/files/ENCFF975GAK/@@download/ENCFF975GAK.fastq.gz Illumina HiSeq 2000 /files/ENCFF011ZUM/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF466DOW fastq reads ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 1239654707 Xiang-Dong Fu, UCSD d435111c55d13ba6e33c01f56284c4b3 https://www.encodeproject.org/files/ENCFF466DOW/@@download/ENCFF466DOW.fastq.gz Illumina HiSeq 2000 /files/ENCFF197MJX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF715ION bam unfiltered alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF643CGH, ENCFF975GAK 1652176102 ENCODE Processing Pipeline 8a258aa4dc85c6db01b8bad25d95b222 https://www.encodeproject.org/files/ENCFF715ION/@@download/ENCFF715ION.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF447XLZ bam unfiltered alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF466DOW, ENCFF643CGH 1510279950 ENCODE Processing Pipeline 6f7fafcbbdbc9779f6b67c62b06e243a https://www.encodeproject.org/files/ENCFF447XLZ/@@download/ENCFF447XLZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF216SKQ bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF643CGH, ENCFF975GAK 472832631 ENCODE Processing Pipeline 1c3d3039c7d71317d3aff301a7f2ab4a https://www.encodeproject.org/files/ENCFF216SKQ/@@download/ENCFF216SKQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF065PVM bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF466DOW, ENCFF643CGH 600083012 ENCODE Processing Pipeline 0433ffe1a9b92217be9899dcafde1c9b https://www.encodeproject.org/files/ENCFF065PVM/@@download/ENCFF065PVM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF594WUR bam unfiltered alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF466DOW, ENCFF807MUK 1503972873 ENCODE Processing Pipeline d1a428c236bf39adcf30dffcbbf396cd https://www.encodeproject.org/files/ENCFF594WUR/@@download/ENCFF594WUR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF654YMV bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF807MUK, ENCFF975GAK 473393847 ENCODE Processing Pipeline c8730e0e828099d92eac748388954279 https://www.encodeproject.org/files/ENCFF654YMV/@@download/ENCFF654YMV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF369VLT bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF466DOW, ENCFF807MUK 600731496 ENCODE Processing Pipeline 5322988bac926ea7bbe1f01dd0883220 https://www.encodeproject.org/files/ENCFF369VLT/@@download/ENCFF369VLT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF378SYI bam unfiltered alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF807MUK, ENCFF975GAK 1645447716 ENCODE Processing Pipeline 9583c3951a75d430f6a69b7427972e22 https://www.encodeproject.org/files/ENCFF378SYI/@@download/ENCFF378SYI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF610QEZ bigWig signal p-value ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF065PVM, ENCFF629YZR 546912073 ENCODE Processing Pipeline a8dc774ecfebe17d3ebe0d10504c4122 https://www.encodeproject.org/files/ENCFF610QEZ/@@download/ENCFF610QEZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF957XPO bigWig fold change over control ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF065PVM, ENCFF629YZR 373930088 ENCODE Processing Pipeline 2489419f664602545dcdfd9d21cb46de https://www.encodeproject.org/files/ENCFF957XPO/@@download/ENCFF957XPO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF036THF bigWig signal p-value ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF065PVM, ENCFF216SKQ, ENCFF563YRA, ENCFF629YZR 1001289412 ENCODE Processing Pipeline 91aecd7177772a6af8fd344ddaec3e21 https://www.encodeproject.org/files/ENCFF036THF/@@download/ENCFF036THF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF123VBF bigWig fold change over control ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF065PVM, ENCFF216SKQ, ENCFF563YRA, ENCFF629YZR 790028118 ENCODE Processing Pipeline 9a3269aa720641a2c8e3fc956ba52394 https://www.encodeproject.org/files/ENCFF123VBF/@@download/ENCFF123VBF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF778BCW bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF065PVM, ENCFF629YZR 5664172 ENCODE Processing Pipeline 5194c494445440fbbfd59353e04b61be https://www.encodeproject.org/files/ENCFF778BCW/@@download/ENCFF778BCW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF778DDJ bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF065PVM, ENCFF216SKQ, ENCFF563YRA, ENCFF629YZR 6844258 ENCODE Processing Pipeline e58b6ea0bb5adf1430e309ffe94fea89 https://www.encodeproject.org/files/ENCFF778DDJ/@@download/ENCFF778DDJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF043VFZ bigWig fold change over control ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF216SKQ, ENCFF563YRA 325949607 ENCODE Processing Pipeline 02e01be14ad221b73b8f68588ad57277 https://www.encodeproject.org/files/ENCFF043VFZ/@@download/ENCFF043VFZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF672BBS bigWig signal p-value ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF216SKQ, ENCFF563YRA 522777088 ENCODE Processing Pipeline 0df56fe3fb24d760dbb11391e02394fb https://www.encodeproject.org/files/ENCFF672BBS/@@download/ENCFF672BBS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF122FVR bed narrowPeak optimal idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF396CRB, ENCFF419RSJ, ENCFF778BCW, ENCFF778DDJ 47278 ENCODE Processing Pipeline 347857bf2a94acc134f0f41f44ffac0c https://www.encodeproject.org/files/ENCFF122FVR/@@download/ENCFF122FVR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF396CRB bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF216SKQ, ENCFF563YRA 5674418 ENCODE Processing Pipeline c286fa4d1e80853fdb9e7a28468f6e90 https://www.encodeproject.org/files/ENCFF396CRB/@@download/ENCFF396CRB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF248GRD bed narrowPeak conservative idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF396CRB, ENCFF419RSJ, ENCFF778BCW, ENCFF778DDJ 45257 ENCODE Processing Pipeline b8e80add60660cfe7ff9dc358b0e507a https://www.encodeproject.org/files/ENCFF248GRD/@@download/ENCFF248GRD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF524OFZ bigBed narrowPeak conservative idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF248GRD 179632 ENCODE Processing Pipeline 0898faf097736ab94b34d0acfbc4699c https://www.encodeproject.org/files/ENCFF524OFZ/@@download/ENCFF524OFZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF419BKM bigBed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF778BCW 13235098 ENCODE Processing Pipeline 7b2ef043e523f72b37a5eb3739a96e51 https://www.encodeproject.org/files/ENCFF419BKM/@@download/ENCFF419BKM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF580PBS bigBed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF396CRB 13117607 ENCODE Processing Pipeline 46ef86a1337cfbdfbb187df0fc7136a8 https://www.encodeproject.org/files/ENCFF580PBS/@@download/ENCFF580PBS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF795NYL bigBed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF778DDJ 13202135 ENCODE Processing Pipeline fadceaaa92612d4369b70b9cb025e132 https://www.encodeproject.org/files/ENCFF795NYL/@@download/ENCFF795NYL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF593CLP bigBed narrowPeak optimal idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF122FVR 185103 ENCODE Processing Pipeline 6c4ff3dacaeafc78061bceb161afc364 https://www.encodeproject.org/files/ENCFF593CLP/@@download/ENCFF593CLP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF864QEG bigWig signal p-value ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF154PCC, ENCFF369VLT 561902472 ENCODE Processing Pipeline 73a91ed1de35d215b9f0195d9ba8bcde https://www.encodeproject.org/files/ENCFF864QEG/@@download/ENCFF864QEG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF364HBV bigWig fold change over control ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF154PCC, ENCFF369VLT 376633185 ENCODE Processing Pipeline 9b293a0428aa9ab0476eb99cf1c5b6ae https://www.encodeproject.org/files/ENCFF364HBV/@@download/ENCFF364HBV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF573KGI bigWig signal p-value ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF096KCE, ENCFF654YMV 565137544 ENCODE Processing Pipeline d69dc7a30ba2b5b849e2ecb365cf24cd https://www.encodeproject.org/files/ENCFF573KGI/@@download/ENCFF573KGI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF925HJA bigWig signal p-value ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF096KCE, ENCFF154PCC, ENCFF369VLT, ENCFF654YMV 1002694540 ENCODE Processing Pipeline f4f778b91c551fcbbc37ebfb13c890e5 https://www.encodeproject.org/files/ENCFF925HJA/@@download/ENCFF925HJA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF312LNY bigWig fold change over control ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF096KCE, ENCFF654YMV 326265554 ENCODE Processing Pipeline 7a6278410f8c24f05c230e068ba98e6b https://www.encodeproject.org/files/ENCFF312LNY/@@download/ENCFF312LNY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF553DKF bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF096KCE, ENCFF654YMV 5719907 ENCODE Processing Pipeline 09c1b8b2d3e3f385722d9b3e67922805 https://www.encodeproject.org/files/ENCFF553DKF/@@download/ENCFF553DKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF087PSM bigBed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF214BMQ 13164639 ENCODE Processing Pipeline ce5f1bd02682a0c850f01435ed8e3812 https://www.encodeproject.org/files/ENCFF087PSM/@@download/ENCFF087PSM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF694EXT bigWig fold change over control ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF096KCE, ENCFF154PCC, ENCFF369VLT, ENCFF654YMV 787226953 ENCODE Processing Pipeline fb60bdce43267fb830c44650a9eab43d https://www.encodeproject.org/files/ENCFF694EXT/@@download/ENCFF694EXT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF657EZC bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF096KCE, ENCFF154PCC, ENCFF369VLT, ENCFF654YMV 6854959 ENCODE Processing Pipeline 4a1dc7b915188957a4f03b528e3d5276 https://www.encodeproject.org/files/ENCFF657EZC/@@download/ENCFF657EZC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF623PNB bigBed narrowPeak conservative idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF083OZJ 180548 ENCODE Processing Pipeline fe0f00d03963c5c1eba7c6dae7be3c21 https://www.encodeproject.org/files/ENCFF623PNB/@@download/ENCFF623PNB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF479TZM bed narrowPeak optimal idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF214BMQ, ENCFF553DKF, ENCFF657EZC 48044 ENCODE Processing Pipeline a494e610082b66d08df0c8b2de1c97df https://www.encodeproject.org/files/ENCFF479TZM/@@download/ENCFF479TZM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF974UHY bigBed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF553DKF 13111096 ENCODE Processing Pipeline 90bd550f48a7c24ebb2847ae1a8e28a4 https://www.encodeproject.org/files/ENCFF974UHY/@@download/ENCFF974UHY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF077WTU bigBed narrowPeak optimal idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF479TZM 183906 ENCODE Processing Pipeline 4e0a34e2d6bce1df742ed86cb5863584 https://www.encodeproject.org/files/ENCFF077WTU/@@download/ENCFF077WTU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF214BMQ bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF154PCC, ENCFF369VLT 5375062 ENCODE Processing Pipeline cd6ebec109862baff4c08b0692c08153 https://www.encodeproject.org/files/ENCFF214BMQ/@@download/ENCFF214BMQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF083OZJ bed narrowPeak conservative idr thresholded peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF214BMQ, ENCFF553DKF, ENCFF657EZC 46641 ENCODE Processing Pipeline a856730c150a1c7952ef80b21abcd066 https://www.encodeproject.org/files/ENCFF083OZJ/@@download/ENCFF083OZJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF289ODL bigBed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF657EZC 13178440 ENCODE Processing Pipeline 3dc6df1d9cd1866b35a6d7ba119f7173 https://www.encodeproject.org/files/ENCFF289ODL/@@download/ENCFF289ODL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF182BFU fastq reads ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF967GHE 2126025179 Michael Snyder, Stanford 60b3f55f2ea8b1938a7f1385de5238da SRA:SRR6214386 https://www.encodeproject.org/files/ENCFF182BFU/@@download/ENCFF182BFU.fastq.gz Illumina HiSeq 4000 /files/ENCFF404TLY/ released antibody characterized with exemption ENCFF967GHE fastq reads ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF182BFU 2352381793 Michael Snyder, Stanford 10853614730c01e785895a81e79122d1 SRA:SRR6214386 https://www.encodeproject.org/files/ENCFF967GHE/@@download/ENCFF967GHE.fastq.gz Illumina HiSeq 4000 /files/ENCFF631KZD/ released antibody characterized with exemption ENCFF075QWL bam unfiltered alignments ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF182BFU, ENCFF807MUK, ENCFF967GHE 4450007211 ENCODE Processing Pipeline 761e566e244580804826dcd55f6ded51 https://www.encodeproject.org/files/ENCFF075QWL/@@download/ENCFF075QWL.bam hg19 released antibody characterized with exemption ENCFF155XUI bam alignments ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF182BFU, ENCFF807MUK, ENCFF967GHE 3544028161 ENCODE Processing Pipeline 159b16e15cc0bbcee66d86cfa40065d2 https://www.encodeproject.org/files/ENCFF155XUI/@@download/ENCFF155XUI.bam hg19 released antibody characterized with exemption ENCFF165ETH bam unfiltered alignments ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF182BFU, ENCFF643CGH, ENCFF967GHE 4459669271 ENCODE Processing Pipeline ebaeda5c94e00cf53a68964bf20a0fb7 https://www.encodeproject.org/files/ENCFF165ETH/@@download/ENCFF165ETH.bam GRCh38 released antibody characterized with exemption ENCFF456BVY bam alignments ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF182BFU, ENCFF643CGH, ENCFF967GHE 3548766121 ENCODE Processing Pipeline ca088388e21e6104656034a77562ccff https://www.encodeproject.org/files/ENCFF456BVY/@@download/ENCFF456BVY.bam GRCh38 released antibody characterized with exemption ENCFF955RAS bigWig signal p-value ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF155XUI, ENCFF553WEE 1141841302 ENCODE Processing Pipeline 9b9a95044a5de0b09ca4972a0d3d953c https://www.encodeproject.org/files/ENCFF955RAS/@@download/ENCFF955RAS.bigWig hg19 released antibody characterized with exemption ENCFF868ZEQ bigWig signal p-value ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF456BVY 1141412208 ENCODE Processing Pipeline 8477bff94a87b3a8a08a09e303b3e79d https://www.encodeproject.org/files/ENCFF868ZEQ/@@download/ENCFF868ZEQ.bigWig GRCh38 released antibody characterized with exemption ENCFF574ZJP bigWig fold change over control ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF155XUI, ENCFF553WEE 1075688329 ENCODE Processing Pipeline 3b50584684ebe2ddf152c24922e8bd8d https://www.encodeproject.org/files/ENCFF574ZJP/@@download/ENCFF574ZJP.bigWig hg19 released antibody characterized with exemption ENCFF951JAH bed narrowPeak peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF155XUI, ENCFF553WEE 4971821 ENCODE Processing Pipeline 19ae34206f6df3fc2692b1ae4a6b3502 https://www.encodeproject.org/files/ENCFF951JAH/@@download/ENCFF951JAH.bed.gz hg19 released antibody characterized with exemption ENCFF034NUV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF951JAH 1372 ENCODE Processing Pipeline 674e6ae772e72d182a90c1defe6d4b51 https://www.encodeproject.org/files/ENCFF034NUV/@@download/ENCFF034NUV.bed.gz hg19 released antibody characterized with exemption ENCFF150QSA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF034NUV 71467 ENCODE Processing Pipeline ad326c46f1c30f5489514a4a9e42f35c https://www.encodeproject.org/files/ENCFF150QSA/@@download/ENCFF150QSA.bigBed hg19 released antibody characterized with exemption ENCFF715WMF bigBed narrowPeak peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF951JAH 11651603 ENCODE Processing Pipeline 185481cfef1b99e625e4bdad65234485 https://www.encodeproject.org/files/ENCFF715WMF/@@download/ENCFF715WMF.bigBed hg19 released antibody characterized with exemption ENCFF683WTT bigWig fold change over control ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF456BVY 1075352142 ENCODE Processing Pipeline 357db6174cf1b411dac31ef63b01ae3c https://www.encodeproject.org/files/ENCFF683WTT/@@download/ENCFF683WTT.bigWig GRCh38 released antibody characterized with exemption ENCFF072MPX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF672PKP 1156 ENCODE Processing Pipeline 9bb3af9c48910e5e04abd4dbfd155469 https://www.encodeproject.org/files/ENCFF072MPX/@@download/ENCFF072MPX.bed.gz GRCh38 released antibody characterized with exemption ENCFF148EYO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF072MPX 58515 ENCODE Processing Pipeline 202458d6f115c6902c27f8305d10676c https://www.encodeproject.org/files/ENCFF148EYO/@@download/ENCFF148EYO.bigBed GRCh38 released antibody characterized with exemption ENCFF672PKP bed narrowPeak peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF456BVY 4973270 ENCODE Processing Pipeline 6706e202dc3acfc90ae37214f5bf1279 https://www.encodeproject.org/files/ENCFF672PKP/@@download/ENCFF672PKP.bed.gz GRCh38 released antibody characterized with exemption ENCFF130RRQ bigBed narrowPeak peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF672PKP 11677210 ENCODE Processing Pipeline c746457517fc3d761b351f284ecbf6e3 https://www.encodeproject.org/files/ENCFF130RRQ/@@download/ENCFF130RRQ.bigBed GRCh38 released antibody characterized with exemption ENCFF108LQS fastq reads ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF064VRM 1912635003 Michael Snyder, Stanford e40e32be017511a4eef171ed5d681487 SRA:SRR5111400 https://www.encodeproject.org/files/ENCFF108LQS/@@download/ENCFF108LQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF647OXS fastq reads ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF781NWB 1496978004 Michael Snyder, Stanford f36604b5278a1f8da2f5f4c0dbe63b6f SRA:SRR5111401 https://www.encodeproject.org/files/ENCFF647OXS/@@download/ENCFF647OXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF064VRM fastq reads ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF108LQS 1907398353 Michael Snyder, Stanford 752f6283a32738779001776f39e8627a SRA:SRR5111400 https://www.encodeproject.org/files/ENCFF064VRM/@@download/ENCFF064VRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF781NWB fastq reads ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF647OXS 1492155632 Michael Snyder, Stanford 406ffe3f51fbec09663453de808d660a SRA:SRR5111401 https://www.encodeproject.org/files/ENCFF781NWB/@@download/ENCFF781NWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF943PKT bam unfiltered alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF647OXS, ENCFF781NWB, ENCFF807MUK 3429834592 ENCODE Processing Pipeline f47ba8f8d22ea760fbe9b1855d399253 https://www.encodeproject.org/files/ENCFF943PKT/@@download/ENCFF943PKT.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF392DUA bam unfiltered alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF064VRM, ENCFF108LQS, ENCFF643CGH 4326007532 ENCODE Processing Pipeline 46979a50851d26d60ee1d7de8bb8721b https://www.encodeproject.org/files/ENCFF392DUA/@@download/ENCFF392DUA.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF423JUH bam unfiltered alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF647OXS, ENCFF781NWB 3434329264 ENCODE Processing Pipeline 7d0bfab6a010c502a6f7f464cbde3793 https://www.encodeproject.org/files/ENCFF423JUH/@@download/ENCFF423JUH.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF333XJC bam unfiltered alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF064VRM, ENCFF108LQS, ENCFF807MUK 4319689100 ENCODE Processing Pipeline c2244a4d7f5cb7144e874fb517aaf872 https://www.encodeproject.org/files/ENCFF333XJC/@@download/ENCFF333XJC.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF414AQN bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF064VRM, ENCFF108LQS, ENCFF643CGH 3799688743 ENCODE Processing Pipeline 03ffd2b7e429df1f88a97ede73551560 https://www.encodeproject.org/files/ENCFF414AQN/@@download/ENCFF414AQN.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF064TXC bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF647OXS, ENCFF781NWB, ENCFF807MUK 3003869900 ENCODE Processing Pipeline 9fedb6f9358907f942aea0fc8490c1bf https://www.encodeproject.org/files/ENCFF064TXC/@@download/ENCFF064TXC.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF262FGR bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF064VRM, ENCFF108LQS, ENCFF807MUK 3796975811 ENCODE Processing Pipeline 46f7b7102b79b9442e8eacbad993759d https://www.encodeproject.org/files/ENCFF262FGR/@@download/ENCFF262FGR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF193NZD bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF647OXS, ENCFF781NWB 3005285800 ENCODE Processing Pipeline bc11e3dcd2ab56aab0f1e3ec854e8531 https://www.encodeproject.org/files/ENCFF193NZD/@@download/ENCFF193NZD.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF710MMM bigWig signal p-value ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF064TXC 1159440411 ENCODE Processing Pipeline 9f3de4bfb8b95e8be342410e7161742b https://www.encodeproject.org/files/ENCFF710MMM/@@download/ENCFF710MMM.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF933QQZ bigWig signal p-value ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262FGR 1098179763 ENCODE Processing Pipeline 8ae5d0ae58d5aa5ed666afc67177f2ae https://www.encodeproject.org/files/ENCFF933QQZ/@@download/ENCFF933QQZ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF753NSC bigWig signal p-value ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF064TXC, ENCFF262FGR 1505735322 ENCODE Processing Pipeline 7acacc250b7a68dbfa2a351e38fbf9ac https://www.encodeproject.org/files/ENCFF753NSC/@@download/ENCFF753NSC.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF390HHW bigWig fold change over control ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF064TXC 1103628159 ENCODE Processing Pipeline 4215a3397028184ebbd9cc0bc0fb6f0e https://www.encodeproject.org/files/ENCFF390HHW/@@download/ENCFF390HHW.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF174MZV bigWig fold change over control ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262FGR 1285738087 ENCODE Processing Pipeline bb170d0c9b6cd1e0ff2175a114b64424 https://www.encodeproject.org/files/ENCFF174MZV/@@download/ENCFF174MZV.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF113AOE bigWig fold change over control ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF064TXC, ENCFF262FGR 1753086525 ENCODE Processing Pipeline ec99621bc35d570369cd6096fd4b28d5 https://www.encodeproject.org/files/ENCFF113AOE/@@download/ENCFF113AOE.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF488WTH bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF064TXC 6084122 ENCODE Processing Pipeline 52e2d79009dd8568d0e355b17ebc532c https://www.encodeproject.org/files/ENCFF488WTH/@@download/ENCFF488WTH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF510LBP bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262FGR 6310132 ENCODE Processing Pipeline c994fdd3e59da30e42195e7369fb9984 https://www.encodeproject.org/files/ENCFF510LBP/@@download/ENCFF510LBP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF681SXI bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF064TXC, ENCFF262FGR 6969079 ENCODE Processing Pipeline d4d92e1da9969240c0a7065745be44e7 https://www.encodeproject.org/files/ENCFF681SXI/@@download/ENCFF681SXI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF571LYI bigBed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF488WTH 11364093 ENCODE Processing Pipeline 6bd3fc50926329297503de1bff8e7517 https://www.encodeproject.org/files/ENCFF571LYI/@@download/ENCFF571LYI.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF120VDB bigBed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF510LBP 11327930 ENCODE Processing Pipeline 0a5fcc50016a112aef6ab76047131c54 https://www.encodeproject.org/files/ENCFF120VDB/@@download/ENCFF120VDB.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF598VST bigBed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF681SXI 11178976 ENCODE Processing Pipeline e05c81671324eb4f2a14fde12f25317d https://www.encodeproject.org/files/ENCFF598VST/@@download/ENCFF598VST.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF273PUG bigBed narrowPeak conservative idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF528GYU 86541 ENCODE Processing Pipeline 37a903d3a5a9d99891c425ff480455a9 https://www.encodeproject.org/files/ENCFF273PUG/@@download/ENCFF273PUG.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF528GYU bed narrowPeak conservative idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF488WTH, ENCFF510LBP, ENCFF681SXI 19704 ENCODE Processing Pipeline acd4a760de58a1be6d4552f9d841d627 https://www.encodeproject.org/files/ENCFF528GYU/@@download/ENCFF528GYU.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF033FOE bed narrowPeak optimal idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF488WTH, ENCFF510LBP, ENCFF681SXI 31576 ENCODE Processing Pipeline 69cee260dfe98c253f4145779fe84809 https://www.encodeproject.org/files/ENCFF033FOE/@@download/ENCFF033FOE.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF021SAA bigBed narrowPeak optimal idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF033FOE 106014 ENCODE Processing Pipeline a6165be883dff2248afe20d7848c0b33 https://www.encodeproject.org/files/ENCFF021SAA/@@download/ENCFF021SAA.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF754BOO bigWig signal p-value ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193NZD 1254628589 ENCODE Processing Pipeline 6994fd3bcd30b8538c08f81ce2958321 https://www.encodeproject.org/files/ENCFF754BOO/@@download/ENCFF754BOO.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF093EPY bigWig signal p-value ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF414AQN 1376460366 ENCODE Processing Pipeline 33b4bc9fde9ddf3bd025fc97d1f8aada https://www.encodeproject.org/files/ENCFF093EPY/@@download/ENCFF093EPY.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF831ZMO bigWig signal p-value ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193NZD, ENCFF414AQN 1624669120 ENCODE Processing Pipeline ef9e655bcc571dc1e0188bf2c534b76e https://www.encodeproject.org/files/ENCFF831ZMO/@@download/ENCFF831ZMO.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF515VAB bigWig fold change over control ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193NZD 1100052947 ENCODE Processing Pipeline dae3dd5be2c62370e2ab7dd30fb940e7 https://www.encodeproject.org/files/ENCFF515VAB/@@download/ENCFF515VAB.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF111DND bigWig fold change over control ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF414AQN 1290680047 ENCODE Processing Pipeline 4e558372002d2e27f5ba0863414ae976 https://www.encodeproject.org/files/ENCFF111DND/@@download/ENCFF111DND.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF972NXF bigWig fold change over control ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193NZD, ENCFF414AQN 1750227585 ENCODE Processing Pipeline 54325bca3314ebfbd4a48f18becdd95a https://www.encodeproject.org/files/ENCFF972NXF/@@download/ENCFF972NXF.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF416TTB bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF414AQN 6117082 ENCODE Processing Pipeline 763f775cbb354d29ab460a7c6a3737c5 https://www.encodeproject.org/files/ENCFF416TTB/@@download/ENCFF416TTB.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF233AQN bigBed narrowPeak conservative idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF497YYA 73479 ENCODE Processing Pipeline 57aae21a1a239f3db9542eab2b3ceb0e https://www.encodeproject.org/files/ENCFF233AQN/@@download/ENCFF233AQN.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF958DZG bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193NZD, ENCFF414AQN 6867755 ENCODE Processing Pipeline 3b7897ea8aa0aefd4198fcdbf266758a https://www.encodeproject.org/files/ENCFF958DZG/@@download/ENCFF958DZG.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF497YYA bed narrowPeak conservative idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF416TTB, ENCFF419RSJ, ENCFF914YBP, ENCFF958DZG 19415 ENCODE Processing Pipeline 42f3e5dd4895dbec8c94b5a84b4dcb75 https://www.encodeproject.org/files/ENCFF497YYA/@@download/ENCFF497YYA.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF036AEX bed narrowPeak optimal idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF416TTB, ENCFF419RSJ, ENCFF914YBP, ENCFF958DZG 32845 ENCODE Processing Pipeline e7c8f685200112ef0e24a3d49c9ab5fb https://www.encodeproject.org/files/ENCFF036AEX/@@download/ENCFF036AEX.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF914YBP bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193NZD 5902161 ENCODE Processing Pipeline 4fd93f09a373be87c3eee0b9909ce1c8 https://www.encodeproject.org/files/ENCFF914YBP/@@download/ENCFF914YBP.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF646PGJ bigBed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF416TTB 11330543 ENCODE Processing Pipeline 3a12872451396c840d6956f71bf32e91 https://www.encodeproject.org/files/ENCFF646PGJ/@@download/ENCFF646PGJ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF567PNR bigBed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF958DZG 11194627 ENCODE Processing Pipeline e84259c9182639c7902494286dbd2d77 https://www.encodeproject.org/files/ENCFF567PNR/@@download/ENCFF567PNR.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF775FEX bigBed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF914YBP 11358133 ENCODE Processing Pipeline 4ab00bbdcbb6be20720a7a881f5aada6 https://www.encodeproject.org/files/ENCFF775FEX/@@download/ENCFF775FEX.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF698TSB bigBed narrowPeak optimal idr thresholded peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF036AEX 108899 ENCODE Processing Pipeline c00532f38d67a4ee47f4044a8a6acb01 https://www.encodeproject.org/files/ENCFF698TSB/@@download/ENCFF698TSB.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF679UZB fastq reads ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 1 76 paired-ended 1 ENCFF280KFA 1714586442 Bradley Bernstein, Broad 89207139f3bf460e42a170f1a41df530 https://www.encodeproject.org/files/ENCFF679UZB/@@download/ENCFF679UZB.fastq.gz Illumina HiSeq 2500 /files/ENCFF267XUN/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF280KFA fastq reads ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 1 76 paired-ended 2 ENCFF679UZB 1671091710 Bradley Bernstein, Broad 69e93fd6905a534b015c3bb56f6d367c https://www.encodeproject.org/files/ENCFF280KFA/@@download/ENCFF280KFA.fastq.gz Illumina HiSeq 2500 /files/ENCFF273UTA/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF438KUW fastq reads ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 1 76 paired-ended 1 ENCFF580FWH 1418032165 Bradley Bernstein, Broad c0e2dda3295c2c0ec341180330015064 https://www.encodeproject.org/files/ENCFF438KUW/@@download/ENCFF438KUW.fastq.gz Illumina HiSeq 2500 /files/ENCFF087KQG/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF580FWH fastq reads ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 1 76 paired-ended 2 ENCFF438KUW 1452470626 Bradley Bernstein, Broad c2a977b2b3c8b8f4f4ec588ff3a6d318 https://www.encodeproject.org/files/ENCFF580FWH/@@download/ENCFF580FWH.fastq.gz Illumina HiSeq 2500 /files/ENCFF010AGB/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF969QCE bam unfiltered alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 76 ENCFF438KUW, ENCFF580FWH, ENCFF643CGH 3550362299 ENCODE Processing Pipeline 43cda268666ea6a6c0a21fedd8933619 https://www.encodeproject.org/files/ENCFF969QCE/@@download/ENCFF969QCE.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF379YIZ bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 76 ENCFF438KUW, ENCFF580FWH, ENCFF643CGH 2781443267 ENCODE Processing Pipeline 486a45436dfd8c55c68713c054325923 https://www.encodeproject.org/files/ENCFF379YIZ/@@download/ENCFF379YIZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF716HOW bam unfiltered alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 76 ENCFF438KUW, ENCFF580FWH, ENCFF807MUK 3540747900 ENCODE Processing Pipeline 3c466d4117568e05079a8e3edb423b0b https://www.encodeproject.org/files/ENCFF716HOW/@@download/ENCFF716HOW.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF012OUS bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF280KFA, ENCFF679UZB, ENCFF807MUK 3196478364 ENCODE Processing Pipeline 0a645d44a4da500b221bdb46d1823c48 https://www.encodeproject.org/files/ENCFF012OUS/@@download/ENCFF012OUS.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF121HVG bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 76 ENCFF438KUW, ENCFF580FWH, ENCFF807MUK 2781305684 ENCODE Processing Pipeline 18b53984a41ee14c0f0c090c1d405788 https://www.encodeproject.org/files/ENCFF121HVG/@@download/ENCFF121HVG.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF979EYX bam unfiltered alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF280KFA, ENCFF679UZB, ENCFF807MUK 4080562192 ENCODE Processing Pipeline 6fcdc38c38d68960b9a9215466f1b31e https://www.encodeproject.org/files/ENCFF979EYX/@@download/ENCFF979EYX.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF595PPO bam unfiltered alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF280KFA, ENCFF643CGH, ENCFF679UZB 4090534701 ENCODE Processing Pipeline b3e341af9a4a0aa0598fbbdedd2b0335 https://www.encodeproject.org/files/ENCFF595PPO/@@download/ENCFF595PPO.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF869UFK bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF280KFA, ENCFF643CGH, ENCFF679UZB 3197805242 ENCODE Processing Pipeline 39ac93dcfc4c06a52b094b6aa8533605 https://www.encodeproject.org/files/ENCFF869UFK/@@download/ENCFF869UFK.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF325VEU bigWig signal p-value ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF012OUS, ENCFF269ZDG, ENCFF560TNV 1617652447 ENCODE Processing Pipeline 8f03f43aa6681b1b3aae5315c197e1af https://www.encodeproject.org/files/ENCFF325VEU/@@download/ENCFF325VEU.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF651CJJ bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF012OUS, ENCFF269ZDG, ENCFF560TNV 6681215 ENCODE Processing Pipeline efca6c1f51e285d7447fcc830b91412d https://www.encodeproject.org/files/ENCFF651CJJ/@@download/ENCFF651CJJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF214JLG bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF012OUS, ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 7103861 ENCODE Processing Pipeline d7a22bb92b598bc970296634b810f486 https://www.encodeproject.org/files/ENCFF214JLG/@@download/ENCFF214JLG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF418ZSR bigBed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF214JLG 14247583 ENCODE Processing Pipeline c5cc7f367e26751b2f7388cc4ce1ccc0 https://www.encodeproject.org/files/ENCFF418ZSR/@@download/ENCFF418ZSR.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF989HEL bigBed narrowPeak optimal idr thresholded peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF960XTR 2541779 ENCODE Processing Pipeline 04df7dcdff69bd5697432ebb9d290c61 https://www.encodeproject.org/files/ENCFF989HEL/@@download/ENCFF989HEL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF986QZO bigWig fold change over control ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF408TVJ, ENCFF754UFV, ENCFF869UFK 1524274676 ENCODE Processing Pipeline fc061a8110ec8d6223c1129a5500f577 https://www.encodeproject.org/files/ENCFF986QZO/@@download/ENCFF986QZO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF613NAG bigWig fold change over control ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF012OUS, ENCFF269ZDG, ENCFF560TNV 1527673795 ENCODE Processing Pipeline 043b5b54d85f654e911b2f4754a8af21 https://www.encodeproject.org/files/ENCFF613NAG/@@download/ENCFF613NAG.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF184KAB bigWig signal p-value ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF408TVJ, ENCFF754UFV, ENCFF869UFK 1761677952 ENCODE Processing Pipeline f0d2d363e2f4b015104d6a2fd4b78edc https://www.encodeproject.org/files/ENCFF184KAB/@@download/ENCFF184KAB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF381SHQ bigWig signal p-value ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF012OUS, ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 1996053726 ENCODE Processing Pipeline 876ce2b07ca10e148f9af1ca7de97cfc https://www.encodeproject.org/files/ENCFF381SHQ/@@download/ENCFF381SHQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF031SGA bigWig fold change over control ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF379YIZ, ENCFF408TVJ, ENCFF754UFV, ENCFF869UFK 2067620196 ENCODE Processing Pipeline bf519d2cb4d8aaf931a3b4d8d7ea058d https://www.encodeproject.org/files/ENCFF031SGA/@@download/ENCFF031SGA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF236MQY bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 6878077 ENCODE Processing Pipeline d4c2a4c93af93830b68d3592c165b9df https://www.encodeproject.org/files/ENCFF236MQY/@@download/ENCFF236MQY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF323WJD bigWig signal p-value ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379YIZ, ENCFF408TVJ, ENCFF754UFV 1606904855 ENCODE Processing Pipeline 4437d9fe05e8e18d425f95271bfd1716 https://www.encodeproject.org/files/ENCFF323WJD/@@download/ENCFF323WJD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF572OBZ bigWig signal p-value ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 1583922175 ENCODE Processing Pipeline 437be8613329e480ea3a69c6ce397b0b https://www.encodeproject.org/files/ENCFF572OBZ/@@download/ENCFF572OBZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF632AHW bigWig signal p-value ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF379YIZ, ENCFF408TVJ, ENCFF754UFV, ENCFF869UFK 2052996836 ENCODE Processing Pipeline 05300d1d4af3c5a39f0eff041a3ad999 https://www.encodeproject.org/files/ENCFF632AHW/@@download/ENCFF632AHW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF696QMU bigWig fold change over control ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379YIZ, ENCFF408TVJ, ENCFF754UFV 1476769377 ENCODE Processing Pipeline eaddf503ef08e1fc0d7cb8ef4758a055 https://www.encodeproject.org/files/ENCFF696QMU/@@download/ENCFF696QMU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF037OPH bigWig fold change over control ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF012OUS, ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 2072855898 ENCODE Processing Pipeline 72424ebc139a2326e72122b316b9c013 https://www.encodeproject.org/files/ENCFF037OPH/@@download/ENCFF037OPH.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF710WTA bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF408TVJ, ENCFF754UFV, ENCFF869UFK 6686197 ENCODE Processing Pipeline aa6a02961c17045cc5f9eb33038f47c3 https://www.encodeproject.org/files/ENCFF710WTA/@@download/ENCFF710WTA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF995JYK bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF379YIZ, ENCFF408TVJ, ENCFF754UFV, ENCFF869UFK 7108504 ENCODE Processing Pipeline fac7abfe3d63328128c24d04b18c9be3 https://www.encodeproject.org/files/ENCFF995JYK/@@download/ENCFF995JYK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF548NLX bigBed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF710WTA 11938784 ENCODE Processing Pipeline e48a0663cb9d6b46046c82f7c3cae9fb https://www.encodeproject.org/files/ENCFF548NLX/@@download/ENCFF548NLX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF486ULC bigBed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF651CJJ 11921363 ENCODE Processing Pipeline d4f528c3d8e7227ffeb7f03d0cff3bc3 https://www.encodeproject.org/files/ENCFF486ULC/@@download/ENCFF486ULC.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF227WHA bigBed narrowPeak optimal idr thresholded peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF765BRD 2535834 ENCODE Processing Pipeline 7f465a1e8eeea4094f3f7f238aa6e27b https://www.encodeproject.org/files/ENCFF227WHA/@@download/ENCFF227WHA.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF454ATZ bigWig fold change over control ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 1476947911 ENCODE Processing Pipeline 9f6742ddbc7a5d8920d434bb7c900232 https://www.encodeproject.org/files/ENCFF454ATZ/@@download/ENCFF454ATZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF475RWZ bigBed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF009CAR 13936380 ENCODE Processing Pipeline aed6ec1ef769019bb5e3f9508f96f8de https://www.encodeproject.org/files/ENCFF475RWZ/@@download/ENCFF475RWZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF200CGH bigBed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF236MQY 14061122 ENCODE Processing Pipeline 52acdf08c0f20f91f4504ae37032191b https://www.encodeproject.org/files/ENCFF200CGH/@@download/ENCFF200CGH.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF926IGA bigBed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF995JYK 14263974 ENCODE Processing Pipeline abc685c93d3d30d19e64be160dd5af72 https://www.encodeproject.org/files/ENCFF926IGA/@@download/ENCFF926IGA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF960XTR bed narrowPeak optimal idr thresholded peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF009CAR, ENCFF419RSJ, ENCFF710WTA, ENCFF995JYK 1263573 ENCODE Processing Pipeline d5c5ec97d4f68148693832838ba0397b https://www.encodeproject.org/files/ENCFF960XTR/@@download/ENCFF960XTR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF765BRD bed narrowPeak optimal idr thresholded peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF214JLG, ENCFF236MQY, ENCFF651CJJ 1262132 ENCODE Processing Pipeline 5910eb61c8a1c3124666845d4245da27 https://www.encodeproject.org/files/ENCFF765BRD/@@download/ENCFF765BRD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF009CAR bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379YIZ, ENCFF408TVJ, ENCFF754UFV 6770035 ENCODE Processing Pipeline b1f847757f2a0e24e8691ac53ed87887 https://www.encodeproject.org/files/ENCFF009CAR/@@download/ENCFF009CAR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF000BUU bigBed broadPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SYU 726270 Bradley Bernstein, Broad c8d2aef2d95c5923c26484baa908b9ce https://www.encodeproject.org/files/ENCFF000BUU/@@download/ENCFF000BUU.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000BUV bam alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000BVH 874158593 Bradley Bernstein, Broad 077bd419474c3a7efb00721cb759d76b https://www.encodeproject.org/files/ENCFF000BUV/@@download/ENCFF000BUV.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000BUW bigWig signal ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 312585797 Bradley Bernstein, Broad 15d6d60d68ced93bcfa5c2731fd82c03 https://www.encodeproject.org/files/ENCFF000BUW/@@download/ENCFF000BUW.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF000BVH fastq reads ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1240833353 Bradley Bernstein, Broad a30c631ec4ae56aa986f0dfa9211f464 https://www.encodeproject.org/files/ENCFF000BVH/@@download/ENCFF000BVH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001SYU bed broadPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 407277 Bradley Bernstein, Broad b420e272f8f4d93943a941c44f90905f https://www.encodeproject.org/files/ENCFF001SYU/@@download/ENCFF001SYU.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF922CFI bam unfiltered alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVH, ENCFF807MUK 1527720227 ENCODE Processing Pipeline 2f9b3d3888f5b881c6d3bcfb0cc35730 https://www.encodeproject.org/files/ENCFF922CFI/@@download/ENCFF922CFI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF998RRV bam alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVH, ENCFF807MUK 664927102 ENCODE Processing Pipeline ff5e5d859c9611b2ddbc3088dca7f74a https://www.encodeproject.org/files/ENCFF998RRV/@@download/ENCFF998RRV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF536AIG bam alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVH, ENCFF643CGH 664748579 ENCODE Processing Pipeline 0763775ea7689145daff2b72a586ea3c https://www.encodeproject.org/files/ENCFF536AIG/@@download/ENCFF536AIG.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF262DAG bam unfiltered alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVH, ENCFF643CGH 1533858125 ENCODE Processing Pipeline d572eb81689a0da04e7fc8161e3de04b https://www.encodeproject.org/files/ENCFF262DAG/@@download/ENCFF262DAG.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF369HGX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF305PBB 12477 ENCODE Processing Pipeline 53b27b5f2e085bbaa47aed2295b76e6c https://www.encodeproject.org/files/ENCFF369HGX/@@download/ENCFF369HGX.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF789VXL bigWig signal p-value ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF536AIG 333260194 ENCODE Processing Pipeline 3948cfb1b48d415d46df3848e7f248a2 https://www.encodeproject.org/files/ENCFF789VXL/@@download/ENCFF789VXL.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF731URO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF678FRK 65106 ENCODE Processing Pipeline 1b576f5d75eee8a3c9961219bf279be7 https://www.encodeproject.org/files/ENCFF731URO/@@download/ENCFF731URO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF799JLV bigWig signal p-value ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF998RRV 333397384 ENCODE Processing Pipeline 0421d7cd1a190faed15ee4ad8b54aa21 https://www.encodeproject.org/files/ENCFF799JLV/@@download/ENCFF799JLV.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF596HUV bigBed narrowPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF305PBB 10465730 ENCODE Processing Pipeline 01317b2207e37ea6d84646826537f3b6 https://www.encodeproject.org/files/ENCFF596HUV/@@download/ENCFF596HUV.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF687CDG bed narrowPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF536AIG 4004669 ENCODE Processing Pipeline c6c3f39d696e34016726b1bb4e11b910 https://www.encodeproject.org/files/ENCFF687CDG/@@download/ENCFF687CDG.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF305PBB bed narrowPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF998RRV 4040715 ENCODE Processing Pipeline 7fab496ccb08db39f132bd14491389ff https://www.encodeproject.org/files/ENCFF305PBB/@@download/ENCFF305PBB.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF385GZL bigBed narrowPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF687CDG 10419518 ENCODE Processing Pipeline ce208271e9420660ad6b674494b3f360 https://www.encodeproject.org/files/ENCFF385GZL/@@download/ENCFF385GZL.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF678FRK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF687CDG 12692 ENCODE Processing Pipeline 9efea9cedc30b13f946fb541893057bc https://www.encodeproject.org/files/ENCFF678FRK/@@download/ENCFF678FRK.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF813TKO bigWig fold change over control ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF998RRV 285121886 ENCODE Processing Pipeline 712b5e0a3aa1bdf03a56444526d19025 https://www.encodeproject.org/files/ENCFF813TKO/@@download/ENCFF813TKO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF232YJG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF369HGX 63618 ENCODE Processing Pipeline 029c8c18f24249cf304872b3f68ea252 https://www.encodeproject.org/files/ENCFF232YJG/@@download/ENCFF232YJG.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF151HDM bigWig fold change over control ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF536AIG 283830340 ENCODE Processing Pipeline ec81d4cb865f87db20fa2c0f0078f6f6 https://www.encodeproject.org/files/ENCFF151HDM/@@download/ENCFF151HDM.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF439QJV fastq reads ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 1 ENCFF242LHV 4173291441 Michael Snyder, Stanford d780b348d9062d233c756d8a0b9260f1 SRA:SRR6214356 https://www.encodeproject.org/files/ENCFF439QJV/@@download/ENCFF439QJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released borderline replicate concordance, antibody characterized with exemption ENCFF067QCH fastq reads ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 2 ENCFF474NLU 3183157382 Michael Snyder, Stanford 6bf7596983f104cfcff1ed2d1c6a8656 SRA:SRR6214357 https://www.encodeproject.org/files/ENCFF067QCH/@@download/ENCFF067QCH.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released borderline replicate concordance, antibody characterized with exemption ENCFF242LHV fastq reads ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 1 100 paired-ended 2 ENCFF439QJV 4184653693 Michael Snyder, Stanford 014792a63d8e52b276e96f6969bef345 SRA:SRR6214356 https://www.encodeproject.org/files/ENCFF242LHV/@@download/ENCFF242LHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released borderline replicate concordance, antibody characterized with exemption ENCFF474NLU fastq reads ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 1 100 paired-ended 1 ENCFF067QCH 3164657480 Michael Snyder, Stanford 0d45a0642b4aa979961c935b71a8877d SRA:SRR6214357 https://www.encodeproject.org/files/ENCFF474NLU/@@download/ENCFF474NLU.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released borderline replicate concordance, antibody characterized with exemption ENCFF466QCG bam unfiltered alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF067QCH, ENCFF474NLU, ENCFF807MUK 6648869997 ENCODE Processing Pipeline e9a877843cc6b0296842e7a6e42b59ef https://www.encodeproject.org/files/ENCFF466QCG/@@download/ENCFF466QCG.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF691SNJ bam unfiltered alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF242LHV, ENCFF439QJV, ENCFF807MUK 8611886054 ENCODE Processing Pipeline 774e1e0d771d7d58cf66da2f0a4ef3c8 https://www.encodeproject.org/files/ENCFF691SNJ/@@download/ENCFF691SNJ.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF833TQH bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF067QCH, ENCFF474NLU, ENCFF807MUK 4693736246 ENCODE Processing Pipeline 25fc298edbb7a4e7dbf349738d1742f2 https://www.encodeproject.org/files/ENCFF833TQH/@@download/ENCFF833TQH.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF807RZI bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF242LHV, ENCFF439QJV, ENCFF807MUK 6093603032 ENCODE Processing Pipeline 5a70aa15da576a42fdbb2b3c3d982188 https://www.encodeproject.org/files/ENCFF807RZI/@@download/ENCFF807RZI.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF688OOD bam unfiltered alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF067QCH, ENCFF474NLU, ENCFF643CGH 6660604291 ENCODE Processing Pipeline 2625ac4ae9b225eceb320603bab09e87 https://www.encodeproject.org/files/ENCFF688OOD/@@download/ENCFF688OOD.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF978INA bam unfiltered alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF242LHV, ENCFF439QJV, ENCFF643CGH 8624742704 ENCODE Processing Pipeline bd7ecc21e711a93ce8487d415a404593 https://www.encodeproject.org/files/ENCFF978INA/@@download/ENCFF978INA.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF819DOC bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF067QCH, ENCFF474NLU, ENCFF643CGH 4698218567 ENCODE Processing Pipeline bf0e80b375256cc1e41c6e8ef9b56a61 https://www.encodeproject.org/files/ENCFF819DOC/@@download/ENCFF819DOC.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF421ZIB bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF242LHV, ENCFF439QJV, ENCFF643CGH 6098764657 ENCODE Processing Pipeline 9e20af8eef31fae75bb6a73a593f91c5 https://www.encodeproject.org/files/ENCFF421ZIB/@@download/ENCFF421ZIB.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF930CUK bigWig signal p-value ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF488RJA, ENCFF819DOC 1088557897 ENCODE Processing Pipeline 0fc19341aee83883c0d22cdac598c794 https://www.encodeproject.org/files/ENCFF930CUK/@@download/ENCFF930CUK.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF174JSU bigWig signal p-value ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF760DHW, ENCFF807RZI 1002786366 ENCODE Processing Pipeline 681f0bf9d30be1d2e8e73d8b8ef6a36c https://www.encodeproject.org/files/ENCFF174JSU/@@download/ENCFF174JSU.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF692YUB bigWig signal p-value ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF290DLX, ENCFF421ZIB 1161296058 ENCODE Processing Pipeline 774cf58cd5b0b6e7e8f5a18355e5b47d https://www.encodeproject.org/files/ENCFF692YUB/@@download/ENCFF692YUB.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF120OWM bigWig signal p-value ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF040GAR, ENCFF833TQH 1128750575 ENCODE Processing Pipeline 0ab33f5dbd3971822082d25aac6abaaa https://www.encodeproject.org/files/ENCFF120OWM/@@download/ENCFF120OWM.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF962VYQ bigWig signal p-value ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF290DLX, ENCFF421ZIB, ENCFF488RJA, ENCFF819DOC 1927754903 ENCODE Processing Pipeline 7b649cbc8bf2052408c1c89a03b1a63f https://www.encodeproject.org/files/ENCFF962VYQ/@@download/ENCFF962VYQ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF123RXV bigWig fold change over control ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF040GAR, ENCFF833TQH 1084705663 ENCODE Processing Pipeline 69256a14b3034610c9f03d98d837c162 https://www.encodeproject.org/files/ENCFF123RXV/@@download/ENCFF123RXV.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF759VGN bigWig signal p-value ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF040GAR, ENCFF760DHW, ENCFF807RZI, ENCFF833TQH 1817810107 ENCODE Processing Pipeline ff03644713fc4fcf6437092fc8a6d0dd https://www.encodeproject.org/files/ENCFF759VGN/@@download/ENCFF759VGN.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF553BDV bigWig fold change over control ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF488RJA, ENCFF819DOC 1089998675 ENCODE Processing Pipeline 663ffafa76c2f8174bd664fe04adbe49 https://www.encodeproject.org/files/ENCFF553BDV/@@download/ENCFF553BDV.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF668UKC bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF290DLX, ENCFF421ZIB 6234931 ENCODE Processing Pipeline 87ec8b8976f9e4032e89e8b769cf33d8 https://www.encodeproject.org/files/ENCFF668UKC/@@download/ENCFF668UKC.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF436QJL bigBed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF243CKM 11137334 ENCODE Processing Pipeline a143847840afb910b6225435ec2a63fb https://www.encodeproject.org/files/ENCFF436QJL/@@download/ENCFF436QJL.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF727RNP bigWig fold change over control ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF290DLX, ENCFF421ZIB 1291002886 ENCODE Processing Pipeline fe79b2d69158ff32d5ecbcaeff05f13a https://www.encodeproject.org/files/ENCFF727RNP/@@download/ENCFF727RNP.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF239RGY bigWig fold change over control ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF760DHW, ENCFF807RZI 1289882654 ENCODE Processing Pipeline 28b98133b4c87b1f8665096a19901e46 https://www.encodeproject.org/files/ENCFF239RGY/@@download/ENCFF239RGY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF243CKM bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF488RJA, ENCFF819DOC 5749424 ENCODE Processing Pipeline 79db171b8734c5bb70dce1d2efd74a48 https://www.encodeproject.org/files/ENCFF243CKM/@@download/ENCFF243CKM.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF480NXP bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF760DHW, ENCFF807RZI 6242908 ENCODE Processing Pipeline 9fd2f9158d669bdb9505415b01fedae1 https://www.encodeproject.org/files/ENCFF480NXP/@@download/ENCFF480NXP.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF737TZT bigWig fold change over control ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF290DLX, ENCFF421ZIB, ENCFF488RJA, ENCFF819DOC 2148022768 ENCODE Processing Pipeline ace5c8cabd6b3d8f99f7e27dfe7d665a https://www.encodeproject.org/files/ENCFF737TZT/@@download/ENCFF737TZT.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF136NAY bigWig fold change over control ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF040GAR, ENCFF760DHW, ENCFF807RZI, ENCFF833TQH 2111080724 ENCODE Processing Pipeline b368e70d468ea678d605a1aadda44601 https://www.encodeproject.org/files/ENCFF136NAY/@@download/ENCFF136NAY.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF802MVF bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF040GAR, ENCFF833TQH 5744481 ENCODE Processing Pipeline 87dad70aa9c043d4ecd92ed563a6b90c https://www.encodeproject.org/files/ENCFF802MVF/@@download/ENCFF802MVF.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF620KJG bigBed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF668UKC 11335310 ENCODE Processing Pipeline 9424ab963ff24b449dc9857c3b76748a https://www.encodeproject.org/files/ENCFF620KJG/@@download/ENCFF620KJG.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF503GEQ bigBed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF235SGJ 11047928 ENCODE Processing Pipeline c42d27d8fa41bb2e8c3339222a325e1c https://www.encodeproject.org/files/ENCFF503GEQ/@@download/ENCFF503GEQ.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF130MBR bigBed narrowPeak conservative idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF471EGU 201841 ENCODE Processing Pipeline 11fe82fe08e00f3d68926583376883c0 https://www.encodeproject.org/files/ENCFF130MBR/@@download/ENCFF130MBR.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF111VUI bigBed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF280LRQ 11032173 ENCODE Processing Pipeline 0805a690366712a2d62caa308f701cd3 https://www.encodeproject.org/files/ENCFF111VUI/@@download/ENCFF111VUI.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF235SGJ bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF290DLX, ENCFF421ZIB, ENCFF488RJA, ENCFF819DOC 7024777 ENCODE Processing Pipeline fcf6d2354c51653e98acfaaaa7b20efd https://www.encodeproject.org/files/ENCFF235SGJ/@@download/ENCFF235SGJ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF471EGU bed narrowPeak conservative idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF235SGJ, ENCFF243CKM, ENCFF419RSJ, ENCFF668UKC 89452 ENCODE Processing Pipeline 61fdd63c578df90767fb0a897930ebeb https://www.encodeproject.org/files/ENCFF471EGU/@@download/ENCFF471EGU.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF437CDQ bigBed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF480NXP 11332093 ENCODE Processing Pipeline 2b2fe8301d5f13e865998a178d220d71 https://www.encodeproject.org/files/ENCFF437CDQ/@@download/ENCFF437CDQ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF919JTO bed narrowPeak optimal idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF235SGJ, ENCFF243CKM, ENCFF419RSJ, ENCFF668UKC 118015 ENCODE Processing Pipeline 39b05d35e834e64293f14f294d47f6b6 https://www.encodeproject.org/files/ENCFF919JTO/@@download/ENCFF919JTO.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF800YNO bigBed narrowPeak optimal idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF919JTO 241487 ENCODE Processing Pipeline 7325c1fadd2c40bc817af8ff268e55d6 https://www.encodeproject.org/files/ENCFF800YNO/@@download/ENCFF800YNO.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF369WIC bed narrowPeak conservative idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF280LRQ, ENCFF480NXP, ENCFF802MVF 88130 ENCODE Processing Pipeline 83ce4347c98183633fb536d3defd8ba2 https://www.encodeproject.org/files/ENCFF369WIC/@@download/ENCFF369WIC.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF280LRQ bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF040GAR, ENCFF760DHW, ENCFF807RZI, ENCFF833TQH 7012450 ENCODE Processing Pipeline 383bb8ba120379e14c0e58599fab0714 https://www.encodeproject.org/files/ENCFF280LRQ/@@download/ENCFF280LRQ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF077HYZ bigBed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF802MVF 11118733 ENCODE Processing Pipeline 2bc91c4db568059009c2420c4d09093a https://www.encodeproject.org/files/ENCFF077HYZ/@@download/ENCFF077HYZ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF545SXB bed narrowPeak optimal idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF001TDO, ENCFF280LRQ, ENCFF480NXP, ENCFF802MVF 118104 ENCODE Processing Pipeline 2a018e52c7336d6fcce93715a481d388 https://www.encodeproject.org/files/ENCFF545SXB/@@download/ENCFF545SXB.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF901GWG bigBed narrowPeak conservative idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF369WIC 198557 ENCODE Processing Pipeline 1857695df31e02814902b642278246b4 https://www.encodeproject.org/files/ENCFF901GWG/@@download/ENCFF901GWG.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF966XKS bigBed narrowPeak optimal idr thresholded peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1, 2 ENCFF545SXB 239324 ENCODE Processing Pipeline b6dcf3c13ec76193b924315147bd1129 https://www.encodeproject.org/files/ENCFF966XKS/@@download/ENCFF966XKS.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF000XDH bam alignments ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XDN 452038066 Peggy Farnham, USC a907681742a86f57cc8552d770cfa4f4 https://www.encodeproject.org/files/ENCFF000XDH/@@download/ENCFF000XDH.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDI bam alignments ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XDX 732485594 Peggy Farnham, USC a119d62e67d72c6d3a22e36a70f54862 https://www.encodeproject.org/files/ENCFF000XDI/@@download/ENCFF000XDI.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDJ bigBed narrowPeak peaks ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIH 109685 Peggy Farnham, USC 89cbdb7217226b0c3aa10044daa1898d https://www.encodeproject.org/files/ENCFF000XDJ/@@download/ENCFF000XDJ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDK bigWig signal ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 331023068 Peggy Farnham, USC 9f0593cc4e612f6394f5e9dd85077892 https://www.encodeproject.org/files/ENCFF000XDK/@@download/ENCFF000XDK.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XDN fastq reads ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 347831130 Peggy Farnham, USC afae26e55d6addca856f5345f288f4fb https://www.encodeproject.org/files/ENCFF000XDN/@@download/ENCFF000XDN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDX fastq reads ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 598699358 Peggy Farnham, USC 5585c9b8390a8b4250d6b26b1dcf0747 https://www.encodeproject.org/files/ENCFF000XDX/@@download/ENCFF000XDX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VIH bed narrowPeak peaks ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 28040 Peggy Farnham, USC c7440eebba777b30e17bdd0eb8762fdb https://www.encodeproject.org/files/ENCFF001VIH/@@download/ENCFF001VIH.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CSI bed narrowPeak optimal idr thresholded peaks ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 117604 ENCODE Consortium Analysis Working Group 768813aca230dfe904b00a36c6cffdcd https://www.encodeproject.org/files/ENCFF002CSI/@@download/ENCFF002CSI.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF485SUP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSI 397920 ENCODE Consortium 0a161ba9d64c729df9677e9b49890bea https://www.encodeproject.org/files/ENCFF485SUP/@@download/ENCFF485SUP.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF262QVS fastq reads ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 1 100 paired-ended 2 ENCFF743IYA 4288014654 Michael Snyder, Stanford 52552d61b9640591b9de6b98c20ffcf7 SRA:SRR6214201 https://www.encodeproject.org/files/ENCFF262QVS/@@download/ENCFF262QVS.fastq.gz Illumina HiSeq 2000 /files/ENCFF745ZXO/ released mild to moderate bottlenecking NTR biosample ENCFF066XRO fastq reads ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 1 100 paired-ended 2 ENCFF860SCI 4534424680 Michael Snyder, Stanford 2c6f9119aedaf87844412a6212991c99 SRA:SRR6214202 https://www.encodeproject.org/files/ENCFF066XRO/@@download/ENCFF066XRO.fastq.gz Illumina HiSeq 2000 /files/ENCFF776RZI/ released mild to moderate bottlenecking NTR biosample ENCFF743IYA fastq reads ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 1 100 paired-ended 1 ENCFF262QVS 4140104199 Michael Snyder, Stanford bba86374c2b3e71e745c9dbcd490c531 SRA:SRR6214201 https://www.encodeproject.org/files/ENCFF743IYA/@@download/ENCFF743IYA.fastq.gz Illumina HiSeq 2000 /files/ENCFF868MWO/ released mild to moderate bottlenecking NTR biosample ENCFF860SCI fastq reads ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 1 100 paired-ended 1 ENCFF066XRO 4385888339 Michael Snyder, Stanford 1776c35b841d3c821eab36ecb80259d9 SRA:SRR6214202 https://www.encodeproject.org/files/ENCFF860SCI/@@download/ENCFF860SCI.fastq.gz Illumina HiSeq 2000 /files/ENCFF926HWQ/ released mild to moderate bottlenecking NTR biosample ENCFF646IVA bam unfiltered alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 100 ENCFF066XRO, ENCFF643CGH, ENCFF860SCI 9281372844 ENCODE Processing Pipeline 6aa3385e787d982d92ebb77f8b84bd14 https://www.encodeproject.org/files/ENCFF646IVA/@@download/ENCFF646IVA.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF825AAU bam unfiltered alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 100 ENCFF262QVS, ENCFF643CGH, ENCFF743IYA 9012431862 ENCODE Processing Pipeline 0edc0189a78a8c4f3f9e8b918ed59f1c https://www.encodeproject.org/files/ENCFF825AAU/@@download/ENCFF825AAU.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF514UAV bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 100 ENCFF262QVS, ENCFF643CGH, ENCFF743IYA 7443874733 ENCODE Processing Pipeline fd6742a4e9ec2cbf9ecfeacd41d5bfac https://www.encodeproject.org/files/ENCFF514UAV/@@download/ENCFF514UAV.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF319QUU bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 100 ENCFF066XRO, ENCFF643CGH, ENCFF860SCI 7016118728 ENCODE Processing Pipeline 15c9a0e8937c70e9a1744d9ff671e01f https://www.encodeproject.org/files/ENCFF319QUU/@@download/ENCFF319QUU.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF348FLI bam unfiltered alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 100 ENCFF262QVS, ENCFF743IYA, ENCFF807MUK 8995269534 ENCODE Processing Pipeline 81344cdf8a201eefa575a82ae47ed83a https://www.encodeproject.org/files/ENCFF348FLI/@@download/ENCFF348FLI.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF604ZOD bam unfiltered alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 100 ENCFF066XRO, ENCFF807MUK, ENCFF860SCI 9267710088 ENCODE Processing Pipeline 79e5c22997d44c438650cd733fdf5737 https://www.encodeproject.org/files/ENCFF604ZOD/@@download/ENCFF604ZOD.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF559SOB bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 100 ENCFF262QVS, ENCFF743IYA, ENCFF807MUK 7437321992 ENCODE Processing Pipeline 2feb6171b4d3249c4da94c8ac10a0340 https://www.encodeproject.org/files/ENCFF559SOB/@@download/ENCFF559SOB.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF011USL bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 100 ENCFF066XRO, ENCFF807MUK, ENCFF860SCI 7010387342 ENCODE Processing Pipeline b0a00bd8525be4bb77e133eadee800e8 https://www.encodeproject.org/files/ENCFF011USL/@@download/ENCFF011USL.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF166FMF bigWig fold change over control ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF011USL, ENCFF113PTE, ENCFF761NWZ 2138916989 ENCODE Processing Pipeline 51037b181af31ae7c68291e7da291398 https://www.encodeproject.org/files/ENCFF166FMF/@@download/ENCFF166FMF.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF960CZM bigWig fold change over control ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 2189565025 ENCODE Processing Pipeline d3106c96b57be155547e31d8ec27ab3d https://www.encodeproject.org/files/ENCFF960CZM/@@download/ENCFF960CZM.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF567RUA bigWig signal p-value ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF011USL, ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 2575630734 ENCODE Processing Pipeline 6c1c6b1e6e6e665ef2a04e36201c30e8 https://www.encodeproject.org/files/ENCFF567RUA/@@download/ENCFF567RUA.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF615UXP bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF011USL, ENCFF113PTE, ENCFF761NWZ 7037910 ENCODE Processing Pipeline addba1fd536484c460b922872ee88e88 https://www.encodeproject.org/files/ENCFF615UXP/@@download/ENCFF615UXP.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF144QCV bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF011USL, ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 7087126 ENCODE Processing Pipeline c557c915a9901ce377ef724806ff7a2c https://www.encodeproject.org/files/ENCFF144QCV/@@download/ENCFF144QCV.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF852JRS bigBed narrowPeak conservative idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF522REY 2957862 ENCODE Processing Pipeline 39d040bcf4d6e58fabc587ccc3951819 https://www.encodeproject.org/files/ENCFF852JRS/@@download/ENCFF852JRS.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF563PAW bigWig signal p-value ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 1920360805 ENCODE Processing Pipeline 40240121f2055c3a00aadf2d9f4f9aef https://www.encodeproject.org/files/ENCFF563PAW/@@download/ENCFF563PAW.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF356YES bigWig signal p-value ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF011USL, ENCFF113PTE, ENCFF761NWZ 1957815128 ENCODE Processing Pipeline c09c30760c188dd9ba847bdb129207a6 https://www.encodeproject.org/files/ENCFF356YES/@@download/ENCFF356YES.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF321ERV bigBed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF615UXP 13172915 ENCODE Processing Pipeline 35bf78c6d22cce669d61c0eb245d2ed7 https://www.encodeproject.org/files/ENCFF321ERV/@@download/ENCFF321ERV.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF128IWQ bigBed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF887CGM 13247208 ENCODE Processing Pipeline 4d265fda3a2d43e0b6f6b02cc17731a5 https://www.encodeproject.org/files/ENCFF128IWQ/@@download/ENCFF128IWQ.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF761UVE bigBed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF144QCV 13092815 ENCODE Processing Pipeline c36670ca768bf4e55548ab0a87de26be https://www.encodeproject.org/files/ENCFF761UVE/@@download/ENCFF761UVE.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF996NRM bigWig fold change over control ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF011USL, ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 2774985059 ENCODE Processing Pipeline 97a8ab9765c6eca04e9b2902c6a37efc https://www.encodeproject.org/files/ENCFF996NRM/@@download/ENCFF996NRM.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF887CGM bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 7126902 ENCODE Processing Pipeline 6a916111c34985eec52fd3cc0dfa49ba https://www.encodeproject.org/files/ENCFF887CGM/@@download/ENCFF887CGM.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF522REY bed narrowPeak conservative idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF144QCV, ENCFF615UXP, ENCFF887CGM 1526942 ENCODE Processing Pipeline 0b34fe2ec37aa24ec9f68df9b28c657b https://www.encodeproject.org/files/ENCFF522REY/@@download/ENCFF522REY.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF030BPR bed narrowPeak optimal idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF144QCV, ENCFF615UXP, ENCFF887CGM 1588398 ENCODE Processing Pipeline 5f43fb71d39e6aca7ccb6aef19451ff0 https://www.encodeproject.org/files/ENCFF030BPR/@@download/ENCFF030BPR.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF608UHW bigBed narrowPeak optimal idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF030BPR 3070554 ENCODE Processing Pipeline 7de6e07e20f13367c139d864fdf5c6c7 https://www.encodeproject.org/files/ENCFF608UHW/@@download/ENCFF608UHW.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF154CVA bigBed narrowPeak conservative idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF084MBH 3024261 ENCODE Processing Pipeline a2ea078324d5433666b11fe080fab4f3 https://www.encodeproject.org/files/ENCFF154CVA/@@download/ENCFF154CVA.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF675KGC bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF319QUU, ENCFF483ELD, ENCFF769UET 7163603 ENCODE Processing Pipeline 7fd0f6c7f012d39cd0c3f994cd4f4beb https://www.encodeproject.org/files/ENCFF675KGC/@@download/ENCFF675KGC.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF281DYK bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF319QUU, ENCFF483ELD, ENCFF514UAV, ENCFF769UET 7175316 ENCODE Processing Pipeline 396d5c9140fe80eb4c5ab556ffd7fe5e https://www.encodeproject.org/files/ENCFF281DYK/@@download/ENCFF281DYK.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF294LMQ bigBed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF675KGC 13337514 ENCODE Processing Pipeline dab704ba38ccfd8cc2252db9a5b2e2be https://www.encodeproject.org/files/ENCFF294LMQ/@@download/ENCFF294LMQ.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF084MBH bed narrowPeak conservative idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF281DYK, ENCFF419RSJ, ENCFF643NTT, ENCFF675KGC 1557983 ENCODE Processing Pipeline 6d1392a432ff30495731cd1d56ed0139 https://www.encodeproject.org/files/ENCFF084MBH/@@download/ENCFF084MBH.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF539QXW bigWig signal p-value ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF319QUU, ENCFF483ELD, ENCFF514UAV, ENCFF769UET 2582063247 ENCODE Processing Pipeline fe9646eb5d8296a99ac5bc7c40ff0981 https://www.encodeproject.org/files/ENCFF539QXW/@@download/ENCFF539QXW.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF809PHW bigWig fold change over control ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF319QUU, ENCFF483ELD, ENCFF514UAV, ENCFF769UET 2790087084 ENCODE Processing Pipeline 98ec869c007061d45dafa0cde90871cf https://www.encodeproject.org/files/ENCFF809PHW/@@download/ENCFF809PHW.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF522RNT bigBed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF281DYK 13217510 ENCODE Processing Pipeline f3d032cc4d7628bd03d7544682709d19 https://www.encodeproject.org/files/ENCFF522RNT/@@download/ENCFF522RNT.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF954YAM bigWig signal p-value ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF483ELD, ENCFF514UAV, ENCFF769UET 2152605631 ENCODE Processing Pipeline a4fc988a46f7a17d818d9fdf6ac8c7fe https://www.encodeproject.org/files/ENCFF954YAM/@@download/ENCFF954YAM.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF325VTR bigWig fold change over control ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF483ELD, ENCFF514UAV, ENCFF769UET 2190528788 ENCODE Processing Pipeline 0e17cac6bbb140372a2260ec2836ed52 https://www.encodeproject.org/files/ENCFF325VTR/@@download/ENCFF325VTR.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF692MIF bigWig signal p-value ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF319QUU, ENCFF483ELD, ENCFF769UET 1840989197 ENCODE Processing Pipeline 2d0affd0418e67c7aa4ff1693f427a6e https://www.encodeproject.org/files/ENCFF692MIF/@@download/ENCFF692MIF.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF218EPZ bigWig fold change over control ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF319QUU, ENCFF483ELD, ENCFF769UET 2149490002 ENCODE Processing Pipeline 0ec8cd990c73b128a7ff70ea9dc748f4 https://www.encodeproject.org/files/ENCFF218EPZ/@@download/ENCFF218EPZ.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF643NTT bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF483ELD, ENCFF514UAV, ENCFF769UET 7153880 ENCODE Processing Pipeline 09ea0b8d1f1862257d5f17587df573cc https://www.encodeproject.org/files/ENCFF643NTT/@@download/ENCFF643NTT.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF651BVS bigBed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF643NTT 13292088 ENCODE Processing Pipeline 6dfaa0e1a54631901c051b01953700a5 https://www.encodeproject.org/files/ENCFF651BVS/@@download/ENCFF651BVS.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF730MQM bed narrowPeak optimal idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF281DYK, ENCFF419RSJ, ENCFF643NTT, ENCFF675KGC 1617499 ENCODE Processing Pipeline 04b5142bf0175e83b5b6f89cfcff859d https://www.encodeproject.org/files/ENCFF730MQM/@@download/ENCFF730MQM.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF872GID bigBed narrowPeak optimal idr thresholded peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF730MQM 3134789 ENCODE Processing Pipeline 3465286115c4c4cb5caf0918b28b7057 https://www.encodeproject.org/files/ENCFF872GID/@@download/ENCFF872GID.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF287GOE fastq reads ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 1 100 paired-ended 2 ENCFF124VKG 2078535164 Michael Snyder, Stanford 7dd56a9ab141a78d9fb2189fe75ccb82 https://www.encodeproject.org/files/ENCFF287GOE/@@download/ENCFF287GOE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF124VKG fastq reads ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 1 100 paired-ended 1 ENCFF287GOE 2013733135 Michael Snyder, Stanford 89923a6d4c1b4c910e0ee7185cb9ae81 https://www.encodeproject.org/files/ENCFF124VKG/@@download/ENCFF124VKG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF809LBJ fastq reads ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 1 101 paired-ended 1 ENCFF147AFV 2472434240 Michael Snyder, Stanford c0f5cb848029c670e9f686d98b7f95c7 https://www.encodeproject.org/files/ENCFF809LBJ/@@download/ENCFF809LBJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF147AFV fastq reads ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 1 101 paired-ended 2 ENCFF809LBJ 2508306664 Michael Snyder, Stanford 06bfe03274fcbded2b7eecbe3aa9b209 https://www.encodeproject.org/files/ENCFF147AFV/@@download/ENCFF147AFV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF967JVA bam unfiltered alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 101 ENCFF147AFV, ENCFF643CGH, ENCFF809LBJ 4695792773 ENCODE Processing Pipeline e9335012287df9de9c0bcbb7f8bcf42c https://www.encodeproject.org/files/ENCFF967JVA/@@download/ENCFF967JVA.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF437HNK bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 101 ENCFF147AFV, ENCFF643CGH, ENCFF809LBJ 3279607400 ENCODE Processing Pipeline 08df1b7ce3e5876b41704119b32ebe86 https://www.encodeproject.org/files/ENCFF437HNK/@@download/ENCFF437HNK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF877GJT bam unfiltered alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 101 ENCFF147AFV, ENCFF807MUK, ENCFF809LBJ 4693696700 ENCODE Processing Pipeline d750de67b8852f71c6e056154e420abd https://www.encodeproject.org/files/ENCFF877GJT/@@download/ENCFF877GJT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF269TSX bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 101 ENCFF147AFV, ENCFF807MUK, ENCFF809LBJ 3277796505 ENCODE Processing Pipeline 45db1e2977f04f49d9da1383ab6f00aa https://www.encodeproject.org/files/ENCFF269TSX/@@download/ENCFF269TSX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF397UJK bigWig signal p-value ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF051LWI, ENCFF269TSX 893319961 ENCODE Processing Pipeline d5a25bd7c48b35870cff3331fbf2ea4f https://www.encodeproject.org/files/ENCFF397UJK/@@download/ENCFF397UJK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF478OFI bigWig fold change over control ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF051LWI, ENCFF269TSX 1002689988 ENCODE Processing Pipeline 92bd7967a084278871629a336f0ad624 https://www.encodeproject.org/files/ENCFF478OFI/@@download/ENCFF478OFI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF242LUG bigWig fold change over control ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF227IZS, ENCFF437HNK 997530649 ENCODE Processing Pipeline 4c478b3d96622f17ef6d17f899f8e448 https://www.encodeproject.org/files/ENCFF242LUG/@@download/ENCFF242LUG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF309CYH bigBed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF014LYB 13145381 ENCODE Processing Pipeline 9cabdb2b704b293c6ecb9a8cc232b73f https://www.encodeproject.org/files/ENCFF309CYH/@@download/ENCFF309CYH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF947YAZ bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF051LWI, ENCFF269TSX 6699428 ENCODE Processing Pipeline e0482bbe6d31e3317b2ce16c4f30168d https://www.encodeproject.org/files/ENCFF947YAZ/@@download/ENCFF947YAZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF377EEX bigBed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF947YAZ 13149498 ENCODE Processing Pipeline 6ab02447264215f91c5c3e3bde1d8fb4 https://www.encodeproject.org/files/ENCFF377EEX/@@download/ENCFF377EEX.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF616NOQ bigWig signal p-value ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF227IZS, ENCFF437HNK 1079585017 ENCODE Processing Pipeline 8f5a2afe6256d27f138d70ce86700a8d https://www.encodeproject.org/files/ENCFF616NOQ/@@download/ENCFF616NOQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF501IXT bam unfiltered alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 100 ENCFF124VKG, ENCFF287GOE, ENCFF807MUK 4397849136 ENCODE Processing Pipeline 816772595996653474d70a85c332985f https://www.encodeproject.org/files/ENCFF501IXT/@@download/ENCFF501IXT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF662JMK bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 100 ENCFF124VKG, ENCFF287GOE, ENCFF807MUK 3287250564 ENCODE Processing Pipeline f25893f9733e70c041f0f9d867c71064 https://www.encodeproject.org/files/ENCFF662JMK/@@download/ENCFF662JMK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF574BED bam unfiltered alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 100 ENCFF124VKG, ENCFF287GOE, ENCFF643CGH 4399903618 ENCODE Processing Pipeline 46c23497b7a9ecb2c3cf875df3e038cd https://www.encodeproject.org/files/ENCFF574BED/@@download/ENCFF574BED.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF658CWZ bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 100 ENCFF124VKG, ENCFF287GOE, ENCFF643CGH 3288635458 ENCODE Processing Pipeline f3908cbe6322bddd22c1245a942e597d https://www.encodeproject.org/files/ENCFF658CWZ/@@download/ENCFF658CWZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF699USV bigWig signal p-value ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF051LWI, ENCFF269TSX, ENCFF662JMK 1481427804 ENCODE Processing Pipeline 6a183ada23903b0f9e2c5b82af17847d https://www.encodeproject.org/files/ENCFF699USV/@@download/ENCFF699USV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF810GGD bigWig fold change over control ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF051LWI, ENCFF269TSX, ENCFF662JMK 1488844095 ENCODE Processing Pipeline a4b62014f85b20f6f41156b4a12cf49e https://www.encodeproject.org/files/ENCFF810GGD/@@download/ENCFF810GGD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF659TYY bigWig fold change over control ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF051LWI, ENCFF662JMK 1025791698 ENCODE Processing Pipeline 61327320f4782e5235db989c547f547c https://www.encodeproject.org/files/ENCFF659TYY/@@download/ENCFF659TYY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF114PTZ bed narrowPeak optimal idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF001TDO, ENCFF036DTR, ENCFF620PQN, ENCFF947YAZ 353101 ENCODE Processing Pipeline bddebec1817eff40e35f0cfe74a9ff7a https://www.encodeproject.org/files/ENCFF114PTZ/@@download/ENCFF114PTZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF620PQN bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF051LWI, ENCFF269TSX, ENCFF662JMK 7206856 ENCODE Processing Pipeline 8c94e223846ea8a672e133d7817de491 https://www.encodeproject.org/files/ENCFF620PQN/@@download/ENCFF620PQN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF822DJR bigWig signal p-value ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF051LWI, ENCFF662JMK 889256265 ENCODE Processing Pipeline 5b37336d352f108d2a33144b527be5ac https://www.encodeproject.org/files/ENCFF822DJR/@@download/ENCFF822DJR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF036DTR bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF051LWI, ENCFF662JMK 6792553 ENCODE Processing Pipeline 87d188037f4f45022e2f4c6b2523115d https://www.encodeproject.org/files/ENCFF036DTR/@@download/ENCFF036DTR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF963UZS bigBed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF036DTR 13178543 ENCODE Processing Pipeline 3a8f4afff73a3a0bc17f9c6b0295d3fe https://www.encodeproject.org/files/ENCFF963UZS/@@download/ENCFF963UZS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF573RPZ bigBed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF620PQN 12902292 ENCODE Processing Pipeline 1376220b6fb6624ea49beaba20f166a2 https://www.encodeproject.org/files/ENCFF573RPZ/@@download/ENCFF573RPZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF287WLC bed narrowPeak conservative idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF001TDO, ENCFF036DTR, ENCFF620PQN, ENCFF947YAZ 234475 ENCODE Processing Pipeline 9e73f646881fcf56186d9d1784c7933d https://www.encodeproject.org/files/ENCFF287WLC/@@download/ENCFF287WLC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF572NYX bigBed narrowPeak conservative idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF287WLC 519710 ENCODE Processing Pipeline 7e0c948c19600decbfe3255e2d296007 https://www.encodeproject.org/files/ENCFF572NYX/@@download/ENCFF572NYX.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF681FBO bigBed narrowPeak optimal idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF114PTZ 706190 ENCODE Processing Pipeline de0076fe3c480970458be6ca21e96cba https://www.encodeproject.org/files/ENCFF681FBO/@@download/ENCFF681FBO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF423LQO bigBed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF393SGT 13188358 ENCODE Processing Pipeline 5803b5dbc0d5cb9e4183a2e9b8aa1867 https://www.encodeproject.org/files/ENCFF423LQO/@@download/ENCFF423LQO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF628SGN bigWig fold change over control ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF227IZS, ENCFF658CWZ 1025177362 ENCODE Processing Pipeline 3e9ea39e2cf8dc0c1022a0f9eb9adc54 https://www.encodeproject.org/files/ENCFF628SGN/@@download/ENCFF628SGN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF144OUG bigWig signal p-value ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF227IZS, ENCFF658CWZ 889867232 ENCODE Processing Pipeline 0ed97205a0c294b2cb4e8a27bac44645 https://www.encodeproject.org/files/ENCFF144OUG/@@download/ENCFF144OUG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF816XFH bigBed narrowPeak optimal idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF751ZVX 700888 ENCODE Processing Pipeline ebc05de26e0102a1d0a96e4714c27d38 https://www.encodeproject.org/files/ENCFF816XFH/@@download/ENCFF816XFH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF828MPS bigWig signal p-value ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF227IZS, ENCFF437HNK, ENCFF658CWZ 1483165230 ENCODE Processing Pipeline b401d648be642a6869a43d7b573ad0b1 https://www.encodeproject.org/files/ENCFF828MPS/@@download/ENCFF828MPS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF014LYB bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 ENCFF227IZS, ENCFF437HNK 6688390 ENCODE Processing Pipeline 201d3184f61b4c3f705c9fbcd106c49c https://www.encodeproject.org/files/ENCFF014LYB/@@download/ENCFF014LYB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF726SVI bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF227IZS, ENCFF437HNK, ENCFF658CWZ 7190388 ENCODE Processing Pipeline 8895af9d6cf9921dbb024698bde906af https://www.encodeproject.org/files/ENCFF726SVI/@@download/ENCFF726SVI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF556QKN bigBed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF726SVI 12894656 ENCODE Processing Pipeline c855a89311559d75c4f94461aedfcea3 https://www.encodeproject.org/files/ENCFF556QKN/@@download/ENCFF556QKN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF102TZK bed narrowPeak conservative idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF014LYB, ENCFF393SGT, ENCFF419RSJ, ENCFF726SVI 229386 ENCODE Processing Pipeline 92663704eec70850fe9e806bd6275a89 https://www.encodeproject.org/files/ENCFF102TZK/@@download/ENCFF102TZK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF053QSU bigWig fold change over control ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF227IZS, ENCFF437HNK, ENCFF658CWZ 1488671053 ENCODE Processing Pipeline 5bd0f5556724f0a1c4123659aec7416f https://www.encodeproject.org/files/ENCFF053QSU/@@download/ENCFF053QSU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF393SGT bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF227IZS, ENCFF658CWZ 6783917 ENCODE Processing Pipeline 940ae1f343f6a8496cb3671448698305 https://www.encodeproject.org/files/ENCFF393SGT/@@download/ENCFF393SGT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF763PFJ bigBed narrowPeak conservative idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF102TZK 514528 ENCODE Processing Pipeline a7e46c18431d1368747a916e3289c525 https://www.encodeproject.org/files/ENCFF763PFJ/@@download/ENCFF763PFJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF751ZVX bed narrowPeak optimal idr thresholded peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1, 3 ENCFF014LYB, ENCFF393SGT, ENCFF419RSJ, ENCFF726SVI 347207 ENCODE Processing Pipeline 8ec18a0f82ff5880b51c2debe77a83d7 https://www.encodeproject.org/files/ENCFF751ZVX/@@download/ENCFF751ZVX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF570BZB fastq reads ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 2400688921 Richard Myers, HAIB fc0eb78afe0b0a51357cd1919d78d9d6 SRA:SRR6214354 https://www.encodeproject.org/files/ENCFF570BZB/@@download/ENCFF570BZB.fastq.gz Illumina HiSeq 2000 /files/ENCFF977SGP/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF921ZXR fastq reads ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1581509882 Richard Myers, HAIB d4c4eaf797eafed51ad5289dbfc55727 SRA:SRR6214355 https://www.encodeproject.org/files/ENCFF921ZXR/@@download/ENCFF921ZXR.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF862SKN bam unfiltered alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF570BZB, ENCFF643CGH 2692146555 ENCODE Processing Pipeline 1fb6aca889d9309e2779db624a27b013 https://www.encodeproject.org/files/ENCFF862SKN/@@download/ENCFF862SKN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF628WUT bam unfiltered alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF921ZXR 1670087887 ENCODE Processing Pipeline a08befa047e0f445b521bdf4a2ee4b18 https://www.encodeproject.org/files/ENCFF628WUT/@@download/ENCFF628WUT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF180KHA bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF570BZB, ENCFF643CGH 1909373258 ENCODE Processing Pipeline ee319981aa8ef8f876269f32aed41e23 https://www.encodeproject.org/files/ENCFF180KHA/@@download/ENCFF180KHA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF770RPH bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF921ZXR 1091515783 ENCODE Processing Pipeline 6cdaff2ee92d40cdad209cf294b8db2a https://www.encodeproject.org/files/ENCFF770RPH/@@download/ENCFF770RPH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF430TQH bigWig signal p-value ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF180KHA, ENCFF200YPH, ENCFF610PNU 1048600819 ENCODE Processing Pipeline 5817357491eb61743c81cdd886a66818 https://www.encodeproject.org/files/ENCFF430TQH/@@download/ENCFF430TQH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF494UJT bigWig fold change over control ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF770RPH 549998734 ENCODE Processing Pipeline cb00b87fb73ca3955ba8d0f51f42b643 https://www.encodeproject.org/files/ENCFF494UJT/@@download/ENCFF494UJT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF348WSF bigWig signal p-value ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF770RPH 536022260 ENCODE Processing Pipeline 951ded3fcd78790f06f5cdd0567ea503 https://www.encodeproject.org/files/ENCFF348WSF/@@download/ENCFF348WSF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF766QTY bigWig signal p-value ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF180KHA, ENCFF200YPH, ENCFF610PNU, ENCFF770RPH 1051133480 ENCODE Processing Pipeline fb8a469b87fba945994f63db056a8c38 https://www.encodeproject.org/files/ENCFF766QTY/@@download/ENCFF766QTY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF932WPR bigWig fold change over control ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF180KHA, ENCFF200YPH, ENCFF610PNU, ENCFF770RPH 1317339765 ENCODE Processing Pipeline d678da5191768aa5c3b7d0a51540dbdb https://www.encodeproject.org/files/ENCFF932WPR/@@download/ENCFF932WPR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF002XDM bigWig fold change over control ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF180KHA, ENCFF200YPH, ENCFF610PNU 973128644 ENCODE Processing Pipeline d0557105b7ec964570ccbd33235756c9 https://www.encodeproject.org/files/ENCFF002XDM/@@download/ENCFF002XDM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF698APF bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF610PNU, ENCFF770RPH 5811997 ENCODE Processing Pipeline cfd28b088f12755c5afafb9ec1904b8f https://www.encodeproject.org/files/ENCFF698APF/@@download/ENCFF698APF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF594PYS bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF180KHA, ENCFF200YPH, ENCFF610PNU 6567365 ENCODE Processing Pipeline ff6aab92f7ebc51eb104fb525da43038 https://www.encodeproject.org/files/ENCFF594PYS/@@download/ENCFF594PYS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF748WSU bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF180KHA, ENCFF200YPH, ENCFF610PNU, ENCFF770RPH 6928250 ENCODE Processing Pipeline 268a62513d020edfccc1aaf6637983b2 https://www.encodeproject.org/files/ENCFF748WSU/@@download/ENCFF748WSU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF342AEY bigBed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF594PYS 13513206 ENCODE Processing Pipeline 8de1230e23512eeb84786843a662a386 https://www.encodeproject.org/files/ENCFF342AEY/@@download/ENCFF342AEY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF060PVW bigBed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF698APF 13451084 ENCODE Processing Pipeline 2856c94fb0003177cd2da5c77addafd0 https://www.encodeproject.org/files/ENCFF060PVW/@@download/ENCFF060PVW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF142IVB bigBed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF748WSU 13476178 ENCODE Processing Pipeline 1491cda10821a1c73d608849c3b08712 https://www.encodeproject.org/files/ENCFF142IVB/@@download/ENCFF142IVB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF247UJX bed narrowPeak conservative idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF594PYS, ENCFF698APF, ENCFF748WSU 578801 ENCODE Processing Pipeline 8d1b71c3d049ec363771876926e15665 https://www.encodeproject.org/files/ENCFF247UJX/@@download/ENCFF247UJX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF080CDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF178WRO 1210314 ENCODE Processing Pipeline 0b4d1b5a693ebc47ebb165b17fc56754 https://www.encodeproject.org/files/ENCFF080CDZ/@@download/ENCFF080CDZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF460NCP bigBed narrowPeak conservative idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF247UJX 1117369 ENCODE Processing Pipeline 9c9715edef4b0d77223412558f756386 https://www.encodeproject.org/files/ENCFF460NCP/@@download/ENCFF460NCP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF178WRO bed narrowPeak optimal idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF594PYS, ENCFF698APF, ENCFF748WSU 639601 ENCODE Processing Pipeline 695af7d99571288773222c43cd74f344 https://www.encodeproject.org/files/ENCFF178WRO/@@download/ENCFF178WRO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF400XIQ bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF921ZXR 1091498564 ENCODE Processing Pipeline 9acb7085fba767e97578990129c68970 https://www.encodeproject.org/files/ENCFF400XIQ/@@download/ENCFF400XIQ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF077VRK bam unfiltered alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF921ZXR 1661772541 ENCODE Processing Pipeline 69a61551d43d15b20c603977503c46a6 https://www.encodeproject.org/files/ENCFF077VRK/@@download/ENCFF077VRK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF333RKO bam unfiltered alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF570BZB, ENCFF807MUK 2679004135 ENCODE Processing Pipeline c4d42f7b9e4e0b4e943fc0b046fbc20f https://www.encodeproject.org/files/ENCFF333RKO/@@download/ENCFF333RKO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF039BUJ bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF570BZB, ENCFF807MUK 1909161854 ENCODE Processing Pipeline 5e890c143f9116edabdd878ad49d0cde https://www.encodeproject.org/files/ENCFF039BUJ/@@download/ENCFF039BUJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF276QMD bigBed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF783JKF 13504223 ENCODE Processing Pipeline 52e6bf923ebc89d4c5c87066b2ef47a4 https://www.encodeproject.org/files/ENCFF276QMD/@@download/ENCFF276QMD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF733PGO bigWig signal p-value ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV 1038811225 ENCODE Processing Pipeline 6aeb74cc5a63dd7c72645ec9ea55a784 https://www.encodeproject.org/files/ENCFF733PGO/@@download/ENCFF733PGO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF347ECZ bigWig fold change over control ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV, ENCFF400XIQ 1342458379 ENCODE Processing Pipeline 2d4c287bb10c9582e6db4266fa9340e9 https://www.encodeproject.org/files/ENCFF347ECZ/@@download/ENCFF347ECZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF783JKF bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV 6565432 ENCODE Processing Pipeline 6aa5ae808742febf0230c56d9acb5167 https://www.encodeproject.org/files/ENCFF783JKF/@@download/ENCFF783JKF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF185NUX bigWig signal p-value ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF400XIQ 610538529 ENCODE Processing Pipeline c002bd57a7ba38e2bf4c380b7fcafb38 https://www.encodeproject.org/files/ENCFF185NUX/@@download/ENCFF185NUX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF807KYM bigWig fold change over control ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF400XIQ 550475475 ENCODE Processing Pipeline c34146c34cc693343c06365a221fef4b https://www.encodeproject.org/files/ENCFF807KYM/@@download/ENCFF807KYM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF034ALK bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV, ENCFF400XIQ 6976604 ENCODE Processing Pipeline 001a53c986b478e23c5d10362724947b https://www.encodeproject.org/files/ENCFF034ALK/@@download/ENCFF034ALK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF038QDT bigBed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF034ALK 13491259 ENCODE Processing Pipeline 110c04a67603f193d762aff06fbed1db https://www.encodeproject.org/files/ENCFF038QDT/@@download/ENCFF038QDT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF085VWO bed narrowPeak conservative idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF034ALK, ENCFF501HAG, ENCFF783JKF 587534 ENCODE Processing Pipeline e0396d91e44d5d9660a2c2be2520de07 https://www.encodeproject.org/files/ENCFF085VWO/@@download/ENCFF085VWO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF847ZBP bigBed narrowPeak optimal idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF510UBQ 1207120 ENCODE Processing Pipeline b65b96eaf97e6378f2140270bd987350 https://www.encodeproject.org/files/ENCFF847ZBP/@@download/ENCFF847ZBP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF402CFR bigWig signal p-value ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV, ENCFF400XIQ 1216725400 ENCODE Processing Pipeline 23a691e51ebf49ad0e7a4fd8b3380e40 https://www.encodeproject.org/files/ENCFF402CFR/@@download/ENCFF402CFR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF500WCJ bigWig fold change over control ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV 972863122 ENCODE Processing Pipeline b6118582a0aedff970b023847e0e56a7 https://www.encodeproject.org/files/ENCFF500WCJ/@@download/ENCFF500WCJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF314GEJ bigBed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF501HAG 13451129 ENCODE Processing Pipeline c8aba3c338d8955d65dba41c8954c926 https://www.encodeproject.org/files/ENCFF314GEJ/@@download/ENCFF314GEJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF533TWL bigBed narrowPeak conservative idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF085VWO 1130112 ENCODE Processing Pipeline 8bb58f6f0f3c64975aaf16b2cbea8aa9 https://www.encodeproject.org/files/ENCFF533TWL/@@download/ENCFF533TWL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF510UBQ bed narrowPeak optimal idr thresholded peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF034ALK, ENCFF501HAG, ENCFF783JKF 638782 ENCODE Processing Pipeline 047d4008e34b135f96b20243b80c4441 https://www.encodeproject.org/files/ENCFF510UBQ/@@download/ENCFF510UBQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF501HAG bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF400XIQ 5821870 ENCODE Processing Pipeline 1750bc311afac8615c8af3816673b3c9 https://www.encodeproject.org/files/ENCFF501HAG/@@download/ENCFF501HAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF893OYD bam unfiltered alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF520UHF, ENCFF687MII, ENCFF807MUK 6229162596 ENCODE Processing Pipeline 8e1c105d540ba82db8d2912de2b123f1 https://www.encodeproject.org/files/ENCFF893OYD/@@download/ENCFF893OYD.bam hg19 released ENCFF318VEB bam unfiltered alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF297TMP, ENCFF673KNX, ENCFF807MUK 4094477799 ENCODE Processing Pipeline 8b77fc0ea8274a320984ea944b54c2af https://www.encodeproject.org/files/ENCFF318VEB/@@download/ENCFF318VEB.bam hg19 released ENCFF520UHF fastq reads ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 1 100 paired-ended 1 ENCFF687MII 2983793857 Michael Snyder, Stanford 7dfb87cd7a0029b38ec98c1f594edbc8 SRA:SRR5111309 https://www.encodeproject.org/files/ENCFF520UHF/@@download/ENCFF520UHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF687MII fastq reads ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 1 100 paired-ended 2 ENCFF520UHF 2991244435 Michael Snyder, Stanford cb8a5a153a1640a7b34bd932eb163fdf SRA:SRR5111309 https://www.encodeproject.org/files/ENCFF687MII/@@download/ENCFF687MII.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF673KNX fastq reads ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 1 100 paired-ended 1 ENCFF297TMP 1919402398 Michael Snyder, Stanford fbfd40d2f00b76c5200bb3e9796abf74 SRA:SRR5111310 https://www.encodeproject.org/files/ENCFF673KNX/@@download/ENCFF673KNX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF297TMP fastq reads ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 1 100 paired-ended 2 ENCFF673KNX 1970719511 Michael Snyder, Stanford e1566c4ecb122bf7b642fe1dfcc21b09 SRA:SRR5111310 https://www.encodeproject.org/files/ENCFF297TMP/@@download/ENCFF297TMP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF861YTF bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF297TMP, ENCFF673KNX, ENCFF807MUK 3546358726 ENCODE Processing Pipeline a2390fd72ec30b593e33916e440fb46b https://www.encodeproject.org/files/ENCFF861YTF/@@download/ENCFF861YTF.bam hg19 released ENCFF295CQL bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF520UHF, ENCFF687MII, ENCFF807MUK 5017115670 ENCODE Processing Pipeline 98135f564a77b04c052c6fd81e783702 https://www.encodeproject.org/files/ENCFF295CQL/@@download/ENCFF295CQL.bam hg19 released ENCFF093ZCG bigWig signal p-value ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF051LWI, ENCFF295CQL 1087199389 ENCODE Processing Pipeline d346bac4250218d489e1bbb857378276 https://www.encodeproject.org/files/ENCFF093ZCG/@@download/ENCFF093ZCG.bigWig hg19 released ENCFF280CXE bigWig signal p-value ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF051LWI, ENCFF295CQL, ENCFF581ZJL, ENCFF861YTF 1797363843 ENCODE Processing Pipeline c20709e83d29fb64ef2be36999e1822a https://www.encodeproject.org/files/ENCFF280CXE/@@download/ENCFF280CXE.bigWig hg19 released ENCFF285JPS bigWig fold change over control ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF051LWI, ENCFF295CQL 1121868629 ENCODE Processing Pipeline 54c8ecbde8aa587f71b1f7eab82026a8 https://www.encodeproject.org/files/ENCFF285JPS/@@download/ENCFF285JPS.bigWig hg19 released ENCFF882ZUY bigWig fold change over control ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF051LWI, ENCFF295CQL, ENCFF581ZJL, ENCFF861YTF 1986864109 ENCODE Processing Pipeline c0285b74e3e32f4274538a9dbfd5ed4a https://www.encodeproject.org/files/ENCFF882ZUY/@@download/ENCFF882ZUY.bigWig hg19 released ENCFF789ZEC bam unfiltered alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF297TMP, ENCFF643CGH, ENCFF673KNX 4097032674 ENCODE Processing Pipeline 9a9f452d651abf84ae6ff96ee6cf626e https://www.encodeproject.org/files/ENCFF789ZEC/@@download/ENCFF789ZEC.bam GRCh38 released ENCFF775MLD bam unfiltered alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF520UHF, ENCFF643CGH, ENCFF687MII 6232782113 ENCODE Processing Pipeline 5586db8c55238120b5dfbea5025e0791 https://www.encodeproject.org/files/ENCFF775MLD/@@download/ENCFF775MLD.bam GRCh38 released ENCFF873BRB bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF297TMP, ENCFF643CGH, ENCFF673KNX 3548729693 ENCODE Processing Pipeline 3a6324a3b1a450246099d985152f6071 https://www.encodeproject.org/files/ENCFF873BRB/@@download/ENCFF873BRB.bam GRCh38 released ENCFF149LTH bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF520UHF, ENCFF643CGH, ENCFF687MII 5019702036 ENCODE Processing Pipeline 8f13acc1985a56faec31c7d59ec765bb https://www.encodeproject.org/files/ENCFF149LTH/@@download/ENCFF149LTH.bam GRCh38 released ENCFF271VVA bigWig signal p-value ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF873BRB, ENCFF910IKB 1167077218 ENCODE Processing Pipeline bcb11fd09d8bc22a77780a2c5a36ccfb https://www.encodeproject.org/files/ENCFF271VVA/@@download/ENCFF271VVA.bigWig GRCh38 released ENCFF879HIN bigWig signal p-value ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF149LTH, ENCFF227IZS 1100869497 ENCODE Processing Pipeline e91e8762bdd2e0eb60e3dfaff7b2c9d5 https://www.encodeproject.org/files/ENCFF879HIN/@@download/ENCFF879HIN.bigWig GRCh38 released ENCFF386OLG bigWig signal p-value ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF149LTH, ENCFF227IZS, ENCFF873BRB, ENCFF910IKB 1610023365 ENCODE Processing Pipeline 0f0e42dfda6a98fdd881326980c83025 https://www.encodeproject.org/files/ENCFF386OLG/@@download/ENCFF386OLG.bigWig GRCh38 released ENCFF556ANS bigWig fold change over control ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF873BRB, ENCFF910IKB 1027740221 ENCODE Processing Pipeline 69411591a729fd8db2d2c192c0bc5698 https://www.encodeproject.org/files/ENCFF556ANS/@@download/ENCFF556ANS.bigWig GRCh38 released ENCFF486KRK bigWig fold change over control ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF149LTH, ENCFF227IZS 1105722107 ENCODE Processing Pipeline 93d039a3a36c5fd98c20626859ebee38 https://www.encodeproject.org/files/ENCFF486KRK/@@download/ENCFF486KRK.bigWig GRCh38 released ENCFF455HJE bigWig fold change over control ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF149LTH, ENCFF227IZS, ENCFF873BRB, ENCFF910IKB 2012661231 ENCODE Processing Pipeline fb435ebd38839867e3b42ca4ff115951 https://www.encodeproject.org/files/ENCFF455HJE/@@download/ENCFF455HJE.bigWig GRCh38 released ENCFF564UTR bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF873BRB, ENCFF910IKB 6966286 ENCODE Processing Pipeline ae4085d2674045c516927ad3b830905b https://www.encodeproject.org/files/ENCFF564UTR/@@download/ENCFF564UTR.bed.gz GRCh38 released ENCFF118UYB bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF149LTH, ENCFF227IZS 7132481 ENCODE Processing Pipeline b6872dc8aae8cb232b01e7801f1a1720 https://www.encodeproject.org/files/ENCFF118UYB/@@download/ENCFF118UYB.bed.gz GRCh38 released ENCFF058FAF bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF149LTH, ENCFF227IZS, ENCFF873BRB, ENCFF910IKB 7222565 ENCODE Processing Pipeline 21c7ac322ab0c6808345be3fa8f86d25 https://www.encodeproject.org/files/ENCFF058FAF/@@download/ENCFF058FAF.bed.gz GRCh38 released ENCFF980KGS bigBed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF564UTR 12744940 ENCODE Processing Pipeline 278918ce6ae0074ff11b9dfefd25e601 https://www.encodeproject.org/files/ENCFF980KGS/@@download/ENCFF980KGS.bigBed GRCh38 released ENCFF403VRU bigBed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF118UYB 12948007 ENCODE Processing Pipeline 4eae1cd672d2de03a276d3048b7f840f https://www.encodeproject.org/files/ENCFF403VRU/@@download/ENCFF403VRU.bigBed GRCh38 released ENCFF317PUE bigBed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF058FAF 12813538 ENCODE Processing Pipeline 27c7e5a41b9602c1f257203bc497b02d https://www.encodeproject.org/files/ENCFF317PUE/@@download/ENCFF317PUE.bigBed GRCh38 released ENCFF571NDF bed narrowPeak conservative idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF058FAF, ENCFF118UYB, ENCFF419RSJ, ENCFF564UTR 518271 ENCODE Processing Pipeline ac1b57f6fdf886135da15fcacaa3be15 https://www.encodeproject.org/files/ENCFF571NDF/@@download/ENCFF571NDF.bed.gz GRCh38 released ENCFF870XSS bigBed narrowPeak conservative idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF571NDF 1075694 ENCODE Processing Pipeline fde5aff3be5e834b7ef98b33ef0ab2ac https://www.encodeproject.org/files/ENCFF870XSS/@@download/ENCFF870XSS.bigBed GRCh38 released ENCFF088LZZ bed narrowPeak optimal idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF058FAF, ENCFF118UYB, ENCFF419RSJ, ENCFF564UTR 551900 ENCODE Processing Pipeline 6b756a71455696367d8fba2829e048c9 https://www.encodeproject.org/files/ENCFF088LZZ/@@download/ENCFF088LZZ.bed.gz GRCh38 released ENCFF429WFB bigBed narrowPeak optimal idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF088LZZ 1131933 ENCODE Processing Pipeline 1e3609fccc29af3e380f63d56660ef3d https://www.encodeproject.org/files/ENCFF429WFB/@@download/ENCFF429WFB.bigBed GRCh38 released ENCFF293ZSN bigWig signal p-value ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF581ZJL, ENCFF861YTF 1111893123 ENCODE Processing Pipeline d5a6bdcd7b0a2ae122bdc6e627399ddf https://www.encodeproject.org/files/ENCFF293ZSN/@@download/ENCFF293ZSN.bigWig hg19 released ENCFF853IOO bigWig fold change over control ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF581ZJL, ENCFF861YTF 1023266649 ENCODE Processing Pipeline 17098a13d2e8bc20b74e3c77826a8717 https://www.encodeproject.org/files/ENCFF853IOO/@@download/ENCFF853IOO.bigWig hg19 released ENCFF707CDO bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF051LWI, ENCFF295CQL 7127888 ENCODE Processing Pipeline 4dcaba83d4d91c73c9e927c32207b2d4 https://www.encodeproject.org/files/ENCFF707CDO/@@download/ENCFF707CDO.bed.gz hg19 released ENCFF417LEJ bed narrowPeak optimal idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF001TDO, ENCFF361LXO, ENCFF707CDO, ENCFF727WJU 563762 ENCODE Processing Pipeline ee5c6e2a9253142ea4ec418a2668994d https://www.encodeproject.org/files/ENCFF417LEJ/@@download/ENCFF417LEJ.bed.gz hg19 released ENCFF361LXO bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF051LWI, ENCFF295CQL, ENCFF581ZJL, ENCFF861YTF 7247839 ENCODE Processing Pipeline 7a23ac37a95706e8f7e5a1fa01ae85c0 https://www.encodeproject.org/files/ENCFF361LXO/@@download/ENCFF361LXO.bed.gz hg19 released ENCFF727WJU bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF581ZJL, ENCFF861YTF 7063882 ENCODE Processing Pipeline 12166be600da69a05f8b8c0a2b48599d https://www.encodeproject.org/files/ENCFF727WJU/@@download/ENCFF727WJU.bed.gz hg19 released ENCFF839XGU bigBed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF361LXO 12831932 ENCODE Processing Pipeline 0d1844b23010f651a0789b0187a30dd2 https://www.encodeproject.org/files/ENCFF839XGU/@@download/ENCFF839XGU.bigBed hg19 released ENCFF593VVO bed narrowPeak conservative idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF001TDO, ENCFF361LXO, ENCFF707CDO, ENCFF727WJU 526638 ENCODE Processing Pipeline bbec7cf52676b9209866f20a813e9731 https://www.encodeproject.org/files/ENCFF593VVO/@@download/ENCFF593VVO.bed.gz hg19 released ENCFF095LZU bigBed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF727WJU 12839737 ENCODE Processing Pipeline 9dd56b2b8cc5e16ae859d5b6d6c45647 https://www.encodeproject.org/files/ENCFF095LZU/@@download/ENCFF095LZU.bigBed hg19 released ENCFF618LQL bigBed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF707CDO 12940113 ENCODE Processing Pipeline 994644efbce1ccab1541e03d758faee1 https://www.encodeproject.org/files/ENCFF618LQL/@@download/ENCFF618LQL.bigBed hg19 released ENCFF198FDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF593VVO 1085869 ENCODE Processing Pipeline 49a78ab1e2ef999e876f4113e0d75c77 https://www.encodeproject.org/files/ENCFF198FDZ/@@download/ENCFF198FDZ.bigBed hg19 released ENCFF217UMI bigBed narrowPeak optimal idr thresholded peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF417LEJ 1146924 ENCODE Processing Pipeline 80d208b462de9bf2f399f0a3baf58e55 https://www.encodeproject.org/files/ENCFF217UMI/@@download/ENCFF217UMI.bigBed hg19 released ENCFF683HBT fastq reads ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 1 101 paired-ended 1 ENCFF213ENW 2814213737 Michael Snyder, Stanford 3527ccbd1d29099fe7a45f99eae72d58 SRA:SRR6213622 https://www.encodeproject.org/files/ENCFF683HBT/@@download/ENCFF683HBT.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF213ENW fastq reads ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 1 101 paired-ended 2 ENCFF683HBT 3471039033 Michael Snyder, Stanford 6ec19a308201b036b82954e1fd2d9ac0 SRA:SRR6213622 https://www.encodeproject.org/files/ENCFF213ENW/@@download/ENCFF213ENW.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF793GUD fastq reads ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 1 101 paired-ended 1 ENCFF577UHT 2430273971 Michael Snyder, Stanford 75ced6193ebf9f344d236388462a6e37 SRA:SRR6213623 https://www.encodeproject.org/files/ENCFF793GUD/@@download/ENCFF793GUD.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF577UHT fastq reads ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 1 101 paired-ended 2 ENCFF793GUD 2817021387 Michael Snyder, Stanford f157fa97fe4af7797d6cd10fa6f7380d SRA:SRR6213623 https://www.encodeproject.org/files/ENCFF577UHT/@@download/ENCFF577UHT.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF462KQX bam unfiltered alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF577UHT, ENCFF793GUD, ENCFF807MUK 5377758173 ENCODE Processing Pipeline 756ff0eabad79e4d403f5ba2f7f2b513 https://www.encodeproject.org/files/ENCFF462KQX/@@download/ENCFF462KQX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF089CVW bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF577UHT, ENCFF793GUD, ENCFF807MUK 4410898561 ENCODE Processing Pipeline a51351b359f7e57f9ce9ae0d56386be2 https://www.encodeproject.org/files/ENCFF089CVW/@@download/ENCFF089CVW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF050KIG bam unfiltered alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF577UHT, ENCFF643CGH, ENCFF793GUD 5387819582 ENCODE Processing Pipeline 9eefee9ffbc051e5c9ad4105138bd6b1 https://www.encodeproject.org/files/ENCFF050KIG/@@download/ENCFF050KIG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF904MWX bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF577UHT, ENCFF643CGH, ENCFF793GUD 4412910523 ENCODE Processing Pipeline 30b608e401a36b6dde8e64ce6052e7db https://www.encodeproject.org/files/ENCFF904MWX/@@download/ENCFF904MWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF677FXG bam unfiltered alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF213ENW, ENCFF683HBT, ENCFF807MUK 6305218077 ENCODE Processing Pipeline 5181a68b83b7194c23a18677e1aa2498 https://www.encodeproject.org/files/ENCFF677FXG/@@download/ENCFF677FXG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF333HHV bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF213ENW, ENCFF683HBT, ENCFF807MUK 5074679499 ENCODE Processing Pipeline ad504b8b70adc8c0f28383f704ae1f2c https://www.encodeproject.org/files/ENCFF333HHV/@@download/ENCFF333HHV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF025BHY bam unfiltered alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF213ENW, ENCFF643CGH, ENCFF683HBT 6316709971 ENCODE Processing Pipeline c8aab454c2f9bbc6d180be96ef57a690 https://www.encodeproject.org/files/ENCFF025BHY/@@download/ENCFF025BHY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF313PRG bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF213ENW, ENCFF643CGH, ENCFF683HBT 5077423885 ENCODE Processing Pipeline 65d634b89c76051f772e6b61f810af89 https://www.encodeproject.org/files/ENCFF313PRG/@@download/ENCFF313PRG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF796ANM bigWig signal p-value ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF089CVW, ENCFF182WHU 1353803157 ENCODE Processing Pipeline 58db5e173a2c83b6c09212f95a347467 https://www.encodeproject.org/files/ENCFF796ANM/@@download/ENCFF796ANM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF198QBH bigWig fold change over control ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF333HHV 1707921626 ENCODE Processing Pipeline 820af79e234588fbc282a2719b47b282 https://www.encodeproject.org/files/ENCFF198QBH/@@download/ENCFF198QBH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF042LVJ bigWig fold change over control ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF089CVW, ENCFF182WHU 1527776769 ENCODE Processing Pipeline 0308b5ffc01293f13772d15b01ceafc4 https://www.encodeproject.org/files/ENCFF042LVJ/@@download/ENCFF042LVJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF809YZM bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF089CVW, ENCFF182WHU 6679148 ENCODE Processing Pipeline c581e90f5e64ab2a1f8b11f008372e9c https://www.encodeproject.org/files/ENCFF809YZM/@@download/ENCFF809YZM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF996FQE bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF089CVW, ENCFF182WHU, ENCFF333HHV 7254622 ENCODE Processing Pipeline 2d4a86d020cdb19a3be5d3dd193ef575 https://www.encodeproject.org/files/ENCFF996FQE/@@download/ENCFF996FQE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF697WMU bigBed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF996FQE 11081131 ENCODE Processing Pipeline 164826978f3a15dbad6a3b9e7e0ee96c https://www.encodeproject.org/files/ENCFF697WMU/@@download/ENCFF697WMU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF704WDB bigWig fold change over control ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF089CVW, ENCFF182WHU, ENCFF333HHV 2221855251 ENCODE Processing Pipeline 4d003c8fbb97ae7d7759ea21d973460a https://www.encodeproject.org/files/ENCFF704WDB/@@download/ENCFF704WDB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF988DLL bigWig signal p-value ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF333HHV 1530187750 ENCODE Processing Pipeline 23339ea1be3b421994b20e2957b1ade3 https://www.encodeproject.org/files/ENCFF988DLL/@@download/ENCFF988DLL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF704EHT bigBed narrowPeak optimal idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF433BDE 393119 ENCODE Processing Pipeline d7f6f1aa1bac0d1e067d907e5b45215a https://www.encodeproject.org/files/ENCFF704EHT/@@download/ENCFF704EHT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF817QMY bigWig signal p-value ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF089CVW, ENCFF182WHU, ENCFF333HHV 1938518635 ENCODE Processing Pipeline e90ded8176b9aff91947d862c5e309d8 https://www.encodeproject.org/files/ENCFF817QMY/@@download/ENCFF817QMY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF033TCH bigBed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF809YZM 11187424 ENCODE Processing Pipeline c72660eb84bca813262f13279007b08b https://www.encodeproject.org/files/ENCFF033TCH/@@download/ENCFF033TCH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF824FDR bigBed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF751TVZ 11095738 ENCODE Processing Pipeline e046c067a2c72df187f112e078fdef11 https://www.encodeproject.org/files/ENCFF824FDR/@@download/ENCFF824FDR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF061MST bigBed narrowPeak conservative idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF239RPT 346023 ENCODE Processing Pipeline c8f00f4e5f1ade4830f5937734a73013 https://www.encodeproject.org/files/ENCFF061MST/@@download/ENCFF061MST.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF433BDE bed narrowPeak optimal idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF751TVZ, ENCFF809YZM, ENCFF996FQE 187274 ENCODE Processing Pipeline a0136a7c1acaf6c76682617c011d4bd3 https://www.encodeproject.org/files/ENCFF433BDE/@@download/ENCFF433BDE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF751TVZ bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF333HHV 6806871 ENCODE Processing Pipeline d4b38de1ea1f89063da695905651e258 https://www.encodeproject.org/files/ENCFF751TVZ/@@download/ENCFF751TVZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF239RPT bed narrowPeak conservative idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF751TVZ, ENCFF809YZM, ENCFF996FQE 156153 ENCODE Processing Pipeline a9c9fa56b6a258afc31552db8e410096 https://www.encodeproject.org/files/ENCFF239RPT/@@download/ENCFF239RPT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF367DGA bigWig fold change over control ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF313PRG, ENCFF810LLR 1701883278 ENCODE Processing Pipeline 8f626084c0922a8b6da6951ad6294f1e https://www.encodeproject.org/files/ENCFF367DGA/@@download/ENCFF367DGA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF936UES bigBed narrowPeak conservative idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF025DSF 347910 ENCODE Processing Pipeline 7e080c664ec1d96ea586f12914e6818f https://www.encodeproject.org/files/ENCFF936UES/@@download/ENCFF936UES.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF840OES bigWig signal p-value ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF810LLR, ENCFF904MWX 1547792956 ENCODE Processing Pipeline ef0d3a1dc2bde2261f9bde67b7013998 https://www.encodeproject.org/files/ENCFF840OES/@@download/ENCFF840OES.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF025DSF bed narrowPeak conservative idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF020NIR, ENCFF229DCS, ENCFF419RSJ, ENCFF712XAE 156416 ENCODE Processing Pipeline 9b3ef23f8d019d60fb355d3d4335f0dc https://www.encodeproject.org/files/ENCFF025DSF/@@download/ENCFF025DSF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF922OKY bigBed narrowPeak optimal idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF165BAG 397158 ENCODE Processing Pipeline 409250bade31641a8ebb0cb3b23b11a3 https://www.encodeproject.org/files/ENCFF922OKY/@@download/ENCFF922OKY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF311KAP bigWig fold change over control ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF810LLR, ENCFF904MWX 1523172934 ENCODE Processing Pipeline b7ac396d03b198ded9244b58ea62ebc8 https://www.encodeproject.org/files/ENCFF311KAP/@@download/ENCFF311KAP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF948BPR bigWig signal p-value ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF313PRG, ENCFF810LLR 1749939370 ENCODE Processing Pipeline 55e80873ccd0071abf61b05f8e58e04b https://www.encodeproject.org/files/ENCFF948BPR/@@download/ENCFF948BPR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF076JAV bigWig signal p-value ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF313PRG, ENCFF810LLR, ENCFF904MWX 1929341248 ENCODE Processing Pipeline b0896057ce314d50c898660818965566 https://www.encodeproject.org/files/ENCFF076JAV/@@download/ENCFF076JAV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF531LMY bigWig fold change over control ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF313PRG, ENCFF810LLR, ENCFF904MWX 2213661069 ENCODE Processing Pipeline e53f3103021662238dcfeeac41be70fb https://www.encodeproject.org/files/ENCFF531LMY/@@download/ENCFF531LMY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF229DCS bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF810LLR, ENCFF904MWX 6683078 ENCODE Processing Pipeline 583a502d9ba7f217fb2d74fd98d1779e https://www.encodeproject.org/files/ENCFF229DCS/@@download/ENCFF229DCS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF712XAE bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF313PRG, ENCFF810LLR, ENCFF904MWX 7259780 ENCODE Processing Pipeline a4646bf28f30ad8ab50f919572d9b3f3 https://www.encodeproject.org/files/ENCFF712XAE/@@download/ENCFF712XAE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF003CQY bigBed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF229DCS 11200034 ENCODE Processing Pipeline 0ad6eb43ccb1ee344805135feb4c7f1c https://www.encodeproject.org/files/ENCFF003CQY/@@download/ENCFF003CQY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF108GHA bigBed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF020NIR 11108060 ENCODE Processing Pipeline 55f6146b26067ff911e765a897eaff70 https://www.encodeproject.org/files/ENCFF108GHA/@@download/ENCFF108GHA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF165BAG bed narrowPeak optimal idr thresholded peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF020NIR, ENCFF229DCS, ENCFF419RSJ, ENCFF712XAE 189037 ENCODE Processing Pipeline e281160bab74452291f6e762d05d2d45 https://www.encodeproject.org/files/ENCFF165BAG/@@download/ENCFF165BAG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF020NIR bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF313PRG, ENCFF810LLR 6810206 ENCODE Processing Pipeline 07d523eedc18d851ddead1a8efacb9db https://www.encodeproject.org/files/ENCFF020NIR/@@download/ENCFF020NIR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF695BIF bigBed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1, 2 ENCFF712XAE 11097621 ENCODE Processing Pipeline 54f4c0642578d3f411ffc3f2ba65177a https://www.encodeproject.org/files/ENCFF695BIF/@@download/ENCFF695BIF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF483BRW fastq reads ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF238UVA 2397842807 Michael Snyder, Stanford 8807e1182a6225d06acb2a8dfe460749 SRA:SRR6214053 https://www.encodeproject.org/files/ENCFF483BRW/@@download/ENCFF483BRW.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF238UVA fastq reads ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF483BRW 2988585091 Michael Snyder, Stanford 14f3bb0ea7ef5c6f8c51f93f2e82cf5c SRA:SRR6214053 https://www.encodeproject.org/files/ENCFF238UVA/@@download/ENCFF238UVA.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF870RNA fastq reads ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF256RPR 3692063707 Michael Snyder, Stanford 366f0c37f9b6e3897d9e0d995acd74ae SRA:SRR6214052 https://www.encodeproject.org/files/ENCFF870RNA/@@download/ENCFF870RNA.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF256RPR fastq reads ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF870RNA 3055702400 Michael Snyder, Stanford 3fba558d88d51db361f038612388e22c SRA:SRR6214052 https://www.encodeproject.org/files/ENCFF256RPR/@@download/ENCFF256RPR.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF766ISM bam unfiltered alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF238UVA, ENCFF483BRW, ENCFF643CGH 5360539243 ENCODE Processing Pipeline d61740f30d8abd25aa44d510c246a0b1 https://www.encodeproject.org/files/ENCFF766ISM/@@download/ENCFF766ISM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF787NKI bam unfiltered alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF238UVA, ENCFF483BRW, ENCFF807MUK 5351859784 ENCODE Processing Pipeline a835b0ae12147fae569d1cfe0ccd8635 https://www.encodeproject.org/files/ENCFF787NKI/@@download/ENCFF787NKI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF171VWL bam unfiltered alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF256RPR, ENCFF807MUK, ENCFF870RNA 6434003440 ENCODE Processing Pipeline 095473c7b1d98edee1878750b01cf1a3 https://www.encodeproject.org/files/ENCFF171VWL/@@download/ENCFF171VWL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF769AMJ bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF238UVA, ENCFF483BRW, ENCFF643CGH 4149330101 ENCODE Processing Pipeline 17f19e9b81b135007765c0ef84fdcb0a https://www.encodeproject.org/files/ENCFF769AMJ/@@download/ENCFF769AMJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF847XON bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF256RPR, ENCFF643CGH, ENCFF870RNA 5094096990 ENCODE Processing Pipeline e5e035fca7b70a8cadaf2fa2140dc208 https://www.encodeproject.org/files/ENCFF847XON/@@download/ENCFF847XON.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF056GKK bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF256RPR, ENCFF807MUK, ENCFF870RNA 5091285882 ENCODE Processing Pipeline cbb855c5a0145ad3d3abaaedd57f6ac1 https://www.encodeproject.org/files/ENCFF056GKK/@@download/ENCFF056GKK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF852JUK bam unfiltered alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF256RPR, ENCFF643CGH, ENCFF870RNA 6442200672 ENCODE Processing Pipeline 77d09f023dd60add52566b6d501dee2b https://www.encodeproject.org/files/ENCFF852JUK/@@download/ENCFF852JUK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF052TDK bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF238UVA, ENCFF483BRW, ENCFF807MUK 4146676086 ENCODE Processing Pipeline 52aaa89b8cba086315e8c7a36e667275 https://www.encodeproject.org/files/ENCFF052TDK/@@download/ENCFF052TDK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF119AKL bigWig signal p-value ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 1599953766 ENCODE Processing Pipeline 0aee6b0ff05d89d2977bc35533c2298a https://www.encodeproject.org/files/ENCFF119AKL/@@download/ENCFF119AKL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF143PCD bigWig fold change over control ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 1924422859 ENCODE Processing Pipeline ae3abd11d1b33534ce345a8f033e5474 https://www.encodeproject.org/files/ENCFF143PCD/@@download/ENCFF143PCD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF738INZ bigWig fold change over control ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF052TDK, ENCFF529BVI, ENCFF772FBN 1731816282 ENCODE Processing Pipeline 61b6371b08e9d5d4c99d073aaf096eae https://www.encodeproject.org/files/ENCFF738INZ/@@download/ENCFF738INZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF178WLA bigWig signal p-value ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF052TDK, ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 2226159815 ENCODE Processing Pipeline 424cced1488a500edf237459bfe44342 https://www.encodeproject.org/files/ENCFF178WLA/@@download/ENCFF178WLA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF785KGX bigWig fold change over control ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF052TDK, ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 2428260643 ENCODE Processing Pipeline 576847bfa83208da335dfb0f16297dbc https://www.encodeproject.org/files/ENCFF785KGX/@@download/ENCFF785KGX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF644PFR bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF052TDK, ENCFF529BVI, ENCFF772FBN 6303308 ENCODE Processing Pipeline 5f57ce0648e594494bde45888303337f https://www.encodeproject.org/files/ENCFF644PFR/@@download/ENCFF644PFR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF618BDU bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF052TDK, ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 7177116 ENCODE Processing Pipeline ecbd9fad804ae397d8fbb69721a2d34d https://www.encodeproject.org/files/ENCFF618BDU/@@download/ENCFF618BDU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF765IET bigWig signal p-value ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF052TDK, ENCFF529BVI, ENCFF772FBN 1745954096 ENCODE Processing Pipeline eb2bb370636c87b72fc17bd5c6d2ccff https://www.encodeproject.org/files/ENCFF765IET/@@download/ENCFF765IET.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF870IFA bigBed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF644PFR 11427980 ENCODE Processing Pipeline 054307e43f1034bcbd0c5a1a094d9832 https://www.encodeproject.org/files/ENCFF870IFA/@@download/ENCFF870IFA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF141MCC bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 6486394 ENCODE Processing Pipeline bddf5b68e8a40ac56a424d7d581756fa https://www.encodeproject.org/files/ENCFF141MCC/@@download/ENCFF141MCC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF351NEB bigBed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF141MCC 11490483 ENCODE Processing Pipeline 801cdf9299edaddef14b05aa92697c9d https://www.encodeproject.org/files/ENCFF351NEB/@@download/ENCFF351NEB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF144JMY bigBed narrowPeak optimal idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF932EVL 214859 ENCODE Processing Pipeline dcb3b22c52c6566afca126b2d29006c6 https://www.encodeproject.org/files/ENCFF144JMY/@@download/ENCFF144JMY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF270TGO bed narrowPeak conservative idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF141MCC, ENCFF618BDU, ENCFF644PFR 61531 ENCODE Processing Pipeline da7657fadfa313ca5dc981c0304303df https://www.encodeproject.org/files/ENCFF270TGO/@@download/ENCFF270TGO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF490QLA bigBed narrowPeak conservative idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF270TGO 157475 ENCODE Processing Pipeline 0625134d98410c87da951b3e8c464018 https://www.encodeproject.org/files/ENCFF490QLA/@@download/ENCFF490QLA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF698BYV bigBed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF618BDU 11470511 ENCODE Processing Pipeline 9add0dd355c069bdca44bbbfaee089aa https://www.encodeproject.org/files/ENCFF698BYV/@@download/ENCFF698BYV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF932EVL bed narrowPeak optimal idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF141MCC, ENCFF618BDU, ENCFF644PFR 102472 ENCODE Processing Pipeline 8324015652ce03e8a0be6cd9278a3f2a https://www.encodeproject.org/files/ENCFF932EVL/@@download/ENCFF932EVL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF170LLA bigWig signal p-value ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF705ARK, ENCFF769AMJ, ENCFF802NAW 1588507834 ENCODE Processing Pipeline 3e80367040df896ff95ac3f3a288913f https://www.encodeproject.org/files/ENCFF170LLA/@@download/ENCFF170LLA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF614LNR bigWig fold change over control ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF705ARK, ENCFF769AMJ, ENCFF802NAW 1735264203 ENCODE Processing Pipeline 44d07b87b43e78fcdc75923799266e05 https://www.encodeproject.org/files/ENCFF614LNR/@@download/ENCFF614LNR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF599YUO bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF705ARK, ENCFF802NAW, ENCFF847XON 6457979 ENCODE Processing Pipeline 2aa50ef7529841ec537e3fb0fb7231da https://www.encodeproject.org/files/ENCFF599YUO/@@download/ENCFF599YUO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF576EIN bigWig signal p-value ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF705ARK, ENCFF769AMJ, ENCFF802NAW, ENCFF847XON 2339188172 ENCODE Processing Pipeline a30a20994be084f06f3ca4c31081abba https://www.encodeproject.org/files/ENCFF576EIN/@@download/ENCFF576EIN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF998RRR bigWig signal p-value ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF705ARK, ENCFF802NAW, ENCFF847XON 1732029969 ENCODE Processing Pipeline 305f270a5234210b528114873c86de60 https://www.encodeproject.org/files/ENCFF998RRR/@@download/ENCFF998RRR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF423LND bigWig fold change over control ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF705ARK, ENCFF802NAW, ENCFF847XON 1905949815 ENCODE Processing Pipeline d3390053aa4bf4ec64e93d08e8c0b573 https://www.encodeproject.org/files/ENCFF423LND/@@download/ENCFF423LND.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF469OGA bigWig fold change over control ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF705ARK, ENCFF769AMJ, ENCFF802NAW, ENCFF847XON 2425402937 ENCODE Processing Pipeline 2f7a891dd4dd04dffae70635552b3911 https://www.encodeproject.org/files/ENCFF469OGA/@@download/ENCFF469OGA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF058QJN bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF705ARK, ENCFF769AMJ, ENCFF802NAW 6305493 ENCODE Processing Pipeline 71b69fd26693956828c1bed3129a707a https://www.encodeproject.org/files/ENCFF058QJN/@@download/ENCFF058QJN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF609JBG bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF705ARK, ENCFF769AMJ, ENCFF802NAW, ENCFF847XON 7188344 ENCODE Processing Pipeline 816b36a475034f0c45e62b648a765f86 https://www.encodeproject.org/files/ENCFF609JBG/@@download/ENCFF609JBG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF433MJA bigBed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF058QJN 11450696 ENCODE Processing Pipeline 0f9281e508f057c82f6a648ff6d4cf86 https://www.encodeproject.org/files/ENCFF433MJA/@@download/ENCFF433MJA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF896FBO bigBed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF599YUO 11515833 ENCODE Processing Pipeline 6b9d001e7339dedac1e5460f4027dd4b https://www.encodeproject.org/files/ENCFF896FBO/@@download/ENCFF896FBO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF075HHT bed narrowPeak conservative idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF058QJN, ENCFF419RSJ, ENCFF599YUO, ENCFF609JBG 62393 ENCODE Processing Pipeline 2fe48a9de81db596ee41675ccfa94c76 https://www.encodeproject.org/files/ENCFF075HHT/@@download/ENCFF075HHT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF685TME bed narrowPeak optimal idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF058QJN, ENCFF419RSJ, ENCFF599YUO, ENCFF609JBG 103442 ENCODE Processing Pipeline 1764e9a09fec8e5efac0d931fa211d83 https://www.encodeproject.org/files/ENCFF685TME/@@download/ENCFF685TME.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF976QYV bigBed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF609JBG 11504748 ENCODE Processing Pipeline fa8b81abf80df01aab0a637a4af7f919 https://www.encodeproject.org/files/ENCFF976QYV/@@download/ENCFF976QYV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF520DUI bigBed narrowPeak optimal idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF685TME 217771 ENCODE Processing Pipeline 5cea0ff8dfbb4427f04030a17ade12ce https://www.encodeproject.org/files/ENCFF520DUI/@@download/ENCFF520DUI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF310YSS bigBed narrowPeak conservative idr thresholded peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF075HHT 160533 ENCODE Processing Pipeline 76082621d456d5fd6d42439df72ac4e2 https://www.encodeproject.org/files/ENCFF310YSS/@@download/ENCFF310YSS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF984URP fastq reads ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF770SQJ 3391168461 Michael Snyder, Stanford 9a1ac1da90d8ccd1ff9a381efc682813 SRA:SRR6214211 https://www.encodeproject.org/files/ENCFF984URP/@@download/ENCFF984URP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released antibody characterized with exemption ENCFF699NLS fastq reads ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF392GKJ 2654770781 Michael Snyder, Stanford b055182abbaba467fcfd539dbea95471 SRA:SRR6214210 https://www.encodeproject.org/files/ENCFF699NLS/@@download/ENCFF699NLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released antibody characterized with exemption ENCFF770SQJ fastq reads ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF984URP 3482708328 Michael Snyder, Stanford 97727c877ab3c3aea00e3e59c4aabbc3 SRA:SRR6214211 https://www.encodeproject.org/files/ENCFF770SQJ/@@download/ENCFF770SQJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released antibody characterized with exemption ENCFF392GKJ fastq reads ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF699NLS 2729109652 Michael Snyder, Stanford 87546966511b0108c9608d0dd975a599 SRA:SRR6214210 https://www.encodeproject.org/files/ENCFF392GKJ/@@download/ENCFF392GKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released antibody characterized with exemption ENCFF570TFE bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 100 ENCFF392GKJ, ENCFF699NLS, ENCFF807MUK 4734044300 ENCODE Processing Pipeline 405b3f9bad05d0de8c3ee127fa26db34 https://www.encodeproject.org/files/ENCFF570TFE/@@download/ENCFF570TFE.bam hg19 released antibody characterized with exemption ENCFF201EEZ bam unfiltered alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 100 ENCFF392GKJ, ENCFF699NLS, ENCFF807MUK 5890063628 ENCODE Processing Pipeline bad3e2c52118a190e3ee8cdcee556508 https://www.encodeproject.org/files/ENCFF201EEZ/@@download/ENCFF201EEZ.bam hg19 released antibody characterized with exemption ENCFF614RDD bam unfiltered alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 100 ENCFF770SQJ, ENCFF807MUK, ENCFF984URP 7428588811 ENCODE Processing Pipeline f7a8460844ebcb2ad840254343716508 https://www.encodeproject.org/files/ENCFF614RDD/@@download/ENCFF614RDD.bam hg19 released antibody characterized with exemption ENCFF087SRQ bam unfiltered alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 100 ENCFF392GKJ, ENCFF643CGH, ENCFF699NLS 5897962084 ENCODE Processing Pipeline 78595be0470b39cf2eaeaa82fef78b44 https://www.encodeproject.org/files/ENCFF087SRQ/@@download/ENCFF087SRQ.bam GRCh38 released antibody characterized with exemption ENCFF872DLI bam unfiltered alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 100 ENCFF643CGH, ENCFF770SQJ, ENCFF984URP 7438540378 ENCODE Processing Pipeline 57316cb8edc4a7d1632d36f7ab5928cf https://www.encodeproject.org/files/ENCFF872DLI/@@download/ENCFF872DLI.bam GRCh38 released antibody characterized with exemption ENCFF853LEL bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 100 ENCFF392GKJ, ENCFF643CGH, ENCFF699NLS 4739487818 ENCODE Processing Pipeline 0a73461990f02e54f688cee052a2832e https://www.encodeproject.org/files/ENCFF853LEL/@@download/ENCFF853LEL.bam GRCh38 released antibody characterized with exemption ENCFF612QPQ bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 100 ENCFF770SQJ, ENCFF807MUK, ENCFF984URP 5947196426 ENCODE Processing Pipeline 8346fc4ec6cc4b1737d8ba302177a4c6 https://www.encodeproject.org/files/ENCFF612QPQ/@@download/ENCFF612QPQ.bam hg19 released antibody characterized with exemption ENCFF720RKT bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 100 ENCFF643CGH, ENCFF770SQJ, ENCFF984URP 5955214645 ENCODE Processing Pipeline 331348edfe02efacfd9556514d3a6122 https://www.encodeproject.org/files/ENCFF720RKT/@@download/ENCFF720RKT.bam GRCh38 released antibody characterized with exemption ENCFF901JQH bigWig signal p-value ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF570TFE 1046061873 ENCODE Processing Pipeline d02f923dedf9787b993301a26f7689fb https://www.encodeproject.org/files/ENCFF901JQH/@@download/ENCFF901JQH.bigWig hg19 released antibody characterized with exemption ENCFF013RRO bigWig signal p-value ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF612QPQ 1457245262 ENCODE Processing Pipeline cebc0eeb0ef4448e605962b86adac0a0 https://www.encodeproject.org/files/ENCFF013RRO/@@download/ENCFF013RRO.bigWig hg19 released antibody characterized with exemption ENCFF364LTP bigBed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF244DVA 13247893 ENCODE Processing Pipeline 9873c251dd537b1b75c3838ce528a65a https://www.encodeproject.org/files/ENCFF364LTP/@@download/ENCFF364LTP.bigBed hg19 released antibody characterized with exemption ENCFF418EMC bigBed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF404MUH 13181137 ENCODE Processing Pipeline 46087878ee154dcc61c2fe68384fc6ae https://www.encodeproject.org/files/ENCFF418EMC/@@download/ENCFF418EMC.bigBed hg19 released antibody characterized with exemption ENCFF500ZFY bigBed narrowPeak conservative idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF812ELL 189224 ENCODE Processing Pipeline 2ac49e2adb230e0108d2d9103a96bbd4 https://www.encodeproject.org/files/ENCFF500ZFY/@@download/ENCFF500ZFY.bigBed hg19 released antibody characterized with exemption ENCFF907EBW bigWig signal p-value ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF720RKT 1353973120 ENCODE Processing Pipeline d3d1650e65c72e544eb5082b8513f925 https://www.encodeproject.org/files/ENCFF907EBW/@@download/ENCFF907EBW.bigWig GRCh38 released antibody characterized with exemption ENCFF807GLN bigBed narrowPeak conservative idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF850NDA 193595 ENCODE Processing Pipeline 604f4dc1b19aed263d922c973d4ea5ce https://www.encodeproject.org/files/ENCFF807GLN/@@download/ENCFF807GLN.bigBed GRCh38 released antibody characterized with exemption ENCFF589QNM bigWig signal p-value ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF570TFE, ENCFF583FAG, ENCFF612QPQ 2112361100 ENCODE Processing Pipeline 3175de5346ff13ce89f5aace450e68b0 https://www.encodeproject.org/files/ENCFF589QNM/@@download/ENCFF589QNM.bigWig hg19 released antibody characterized with exemption ENCFF327KZK bigWig fold change over control ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF570TFE, ENCFF583FAG, ENCFF612QPQ 2129688169 ENCODE Processing Pipeline 502648f22821c7e913cf4467262b081a https://www.encodeproject.org/files/ENCFF327KZK/@@download/ENCFF327KZK.bigWig hg19 released antibody characterized with exemption ENCFF244DVA bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF570TFE 6267350 ENCODE Processing Pipeline 4db9f776366de457f06b287d42fe57af https://www.encodeproject.org/files/ENCFF244DVA/@@download/ENCFF244DVA.bed.gz hg19 released antibody characterized with exemption ENCFF925JBZ bigWig fold change over control ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF853LEL 1127912328 ENCODE Processing Pipeline 78f8caaa4193ba7e00d9b8afe93cc941 https://www.encodeproject.org/files/ENCFF925JBZ/@@download/ENCFF925JBZ.bigWig GRCh38 released antibody characterized with exemption ENCFF106REB bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF720RKT 6749016 ENCODE Processing Pipeline 02d52656f341e04fef3b3ef2ace3a896 https://www.encodeproject.org/files/ENCFF106REB/@@download/ENCFF106REB.bed.gz GRCh38 released antibody characterized with exemption ENCFF352VPW bigWig fold change over control ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF612QPQ 1666217115 ENCODE Processing Pipeline f4e02a92d131849ea05318d05b157b5a https://www.encodeproject.org/files/ENCFF352VPW/@@download/ENCFF352VPW.bigWig hg19 released antibody characterized with exemption ENCFF517CJI bigWig fold change over control ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF570TFE 1128286365 ENCODE Processing Pipeline 79432ab53ad4b17d163853584a3ab680 https://www.encodeproject.org/files/ENCFF517CJI/@@download/ENCFF517CJI.bigWig hg19 released antibody characterized with exemption ENCFF030NPV bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF612QPQ 6741614 ENCODE Processing Pipeline fce3049077570f0002fac66fa4fdf926 https://www.encodeproject.org/files/ENCFF030NPV/@@download/ENCFF030NPV.bed.gz hg19 released antibody characterized with exemption ENCFF404MUH bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF049MPQ, ENCFF570TFE, ENCFF583FAG, ENCFF612QPQ 7181688 ENCODE Processing Pipeline fe62157241fb47333f3b4232e6355c6f https://www.encodeproject.org/files/ENCFF404MUH/@@download/ENCFF404MUH.bed.gz hg19 released antibody characterized with exemption ENCFF249NBH bigBed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF030NPV 11167473 ENCODE Processing Pipeline ccefe2d424f65cd7547d9b031660a477 https://www.encodeproject.org/files/ENCFF249NBH/@@download/ENCFF249NBH.bigBed hg19 released antibody characterized with exemption ENCFF812ELL bed narrowPeak conservative idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF030NPV, ENCFF244DVA, ENCFF404MUH 73701 ENCODE Processing Pipeline 680252abbe847ef0f3f7cfcc8d572476 https://www.encodeproject.org/files/ENCFF812ELL/@@download/ENCFF812ELL.bed.gz hg19 released antibody characterized with exemption ENCFF346OZB bed narrowPeak optimal idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF030NPV, ENCFF244DVA, ENCFF404MUH 129498 ENCODE Processing Pipeline 2c671cff1296f8ceb47fd8972b5262bf https://www.encodeproject.org/files/ENCFF346OZB/@@download/ENCFF346OZB.bed.gz hg19 released antibody characterized with exemption ENCFF115MVX bigBed narrowPeak optimal idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF346OZB 275929 ENCODE Processing Pipeline c53669ee23c27daf87163c6a3856589b https://www.encodeproject.org/files/ENCFF115MVX/@@download/ENCFF115MVX.bigBed hg19 released antibody characterized with exemption ENCFF496ZCY bigBed narrowPeak optimal idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF414EYO 282116 ENCODE Processing Pipeline c88607d0252db16989ac77d83ac01b28 https://www.encodeproject.org/files/ENCFF496ZCY/@@download/ENCFF496ZCY.bigBed GRCh38 released antibody characterized with exemption ENCFF570JMQ bigWig fold change over control ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF720RKT 1667378742 ENCODE Processing Pipeline 7b10c652d75155416f5991b3eedfd84d https://www.encodeproject.org/files/ENCFF570JMQ/@@download/ENCFF570JMQ.bigWig GRCh38 released antibody characterized with exemption ENCFF330XDO bigWig fold change over control ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF720RKT, ENCFF853LEL 2139974819 ENCODE Processing Pipeline 760f4232b66c3dbddedefa1010c5b19e https://www.encodeproject.org/files/ENCFF330XDO/@@download/ENCFF330XDO.bigWig GRCh38 released antibody characterized with exemption ENCFF873FBE bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF853LEL 6263699 ENCODE Processing Pipeline f9717945d80bb1679802749ca293341e https://www.encodeproject.org/files/ENCFF873FBE/@@download/ENCFF873FBE.bed.gz GRCh38 released antibody characterized with exemption ENCFF715BLK bigWig signal p-value ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF720RKT, ENCFF853LEL 1719342631 ENCODE Processing Pipeline bff7ac857fb1c3c32cf5ace7c22309b2 https://www.encodeproject.org/files/ENCFF715BLK/@@download/ENCFF715BLK.bigWig GRCh38 released antibody characterized with exemption ENCFF514FLJ bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF720RKT, ENCFF853LEL 7182337 ENCODE Processing Pipeline b99ff614d61a932fca332d33fb3a8932 https://www.encodeproject.org/files/ENCFF514FLJ/@@download/ENCFF514FLJ.bed.gz GRCh38 released antibody characterized with exemption ENCFF850NDA bed narrowPeak conservative idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF106REB, ENCFF419RSJ, ENCFF514FLJ, ENCFF873FBE 74085 ENCODE Processing Pipeline 24ea56307424ca02eb3dc8c1dd3228a2 https://www.encodeproject.org/files/ENCFF850NDA/@@download/ENCFF850NDA.bed.gz GRCh38 released antibody characterized with exemption ENCFF414EYO bed narrowPeak optimal idr thresholded peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF106REB, ENCFF419RSJ, ENCFF514FLJ, ENCFF873FBE 131051 ENCODE Processing Pipeline 4c22d38ac3d8f9f59eae6eb9056eae86 https://www.encodeproject.org/files/ENCFF414EYO/@@download/ENCFF414EYO.bed.gz GRCh38 released antibody characterized with exemption ENCFF439BJY bigWig signal p-value ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF291AFY, ENCFF853LEL 1129688262 ENCODE Processing Pipeline b01386cb8c5d71f074d10ef01a97f236 https://www.encodeproject.org/files/ENCFF439BJY/@@download/ENCFF439BJY.bigWig GRCh38 released antibody characterized with exemption ENCFF385UHD bigBed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF106REB 11185364 ENCODE Processing Pipeline 409cf9811b121c8c35c6ee7f4f1cb346 https://www.encodeproject.org/files/ENCFF385UHD/@@download/ENCFF385UHD.bigBed GRCh38 released antibody characterized with exemption ENCFF198DJT bigBed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF873FBE 13258451 ENCODE Processing Pipeline 853d9fb217c8a3ab615d24e1de500627 https://www.encodeproject.org/files/ENCFF198DJT/@@download/ENCFF198DJT.bigBed GRCh38 released antibody characterized with exemption ENCFF988YRC bigBed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF514FLJ 13195067 ENCODE Processing Pipeline dcf750abba9fb22c9f2bae3a75f25bdc https://www.encodeproject.org/files/ENCFF988YRC/@@download/ENCFF988YRC.bigBed GRCh38 released antibody characterized with exemption ENCFF000PPR bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PQJ 2210144645 Richard Myers, HAIB eec168d7ca3b17e18d29bf495209d554 https://www.encodeproject.org/files/ENCFF000PPR/@@download/ENCFF000PPR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPS bigBed broadPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHM 1002182 Richard Myers, HAIB a01255807e9388f6b25ebd17f11cdbfa https://www.encodeproject.org/files/ENCFF000PPS/@@download/ENCFF000PPS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPT bigBed broadPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHN 286185 Richard Myers, HAIB 2d7cf1acc9c581c31de4e8d91a4523c0 https://www.encodeproject.org/files/ENCFF000PPT/@@download/ENCFF000PPT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPU bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PQE 1108308418 Richard Myers, HAIB 002e6171fab101a51686f733721fd8d2 https://www.encodeproject.org/files/ENCFF000PPU/@@download/ENCFF000PPU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPV bigWig raw signal ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 46029174 Richard Myers, HAIB b65b5363f70cfe251a58ce01d4e40ba9 https://www.encodeproject.org/files/ENCFF000PPV/@@download/ENCFF000PPV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPX bigWig raw signal ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 8366029 Richard Myers, HAIB 842d5fbd75e75907e5b8fedd5985cc5e https://www.encodeproject.org/files/ENCFF000PPX/@@download/ENCFF000PPX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PQE fastq reads ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 731212319 Richard Myers, HAIB cba6aefc1d63d1dc2505b60b66c42029 https://www.encodeproject.org/files/ENCFF000PQE/@@download/ENCFF000PQE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POH/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PQJ fastq reads ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1625137849 Richard Myers, HAIB e01b5095e13a0c39c598062ea4564f08 https://www.encodeproject.org/files/ENCFF000PQJ/@@download/ENCFF000PQJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001UHM bed broadPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 524230 Richard Myers, HAIB a53fe67497ebdc7e68f5db9ace68778a https://www.encodeproject.org/files/ENCFF001UHM/@@download/ENCFF001UHM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001UHN bed broadPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 111968 Richard Myers, HAIB 5df5f253dcaf663868b794226ee50a48 https://www.encodeproject.org/files/ENCFF001UHN/@@download/ENCFF001UHN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient replicate concordance missing control alignments ENCFF002CLB bed narrowPeak optimal idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 623335 ENCODE Consortium Analysis Working Group 376cdc1b9880f92085b220e94c996ae8 https://www.encodeproject.org/files/ENCFF002CLB/@@download/ENCFF002CLB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF952JQP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLB 1404328 ENCODE Consortium 229825460bb29b5934cf77e12f4c61a1 https://www.encodeproject.org/files/ENCFF952JQP/@@download/ENCFF952JQP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF449IUJ bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQE, ENCFF643CGH 540733347 ENCODE Processing Pipeline d38238759c8aaa259ebc5cde2e0776b4 https://www.encodeproject.org/files/ENCFF449IUJ/@@download/ENCFF449IUJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF919ZCW bam unfiltered alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQE, ENCFF643CGH 946091884 ENCODE Processing Pipeline 7bd3a7353af62849aee09f143a72ada4 https://www.encodeproject.org/files/ENCFF919ZCW/@@download/ENCFF919ZCW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF850TET bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PQJ, ENCFF643CGH 1282865743 ENCODE Processing Pipeline fccb64867ab79e5f3d5303b1f85b130a https://www.encodeproject.org/files/ENCFF850TET/@@download/ENCFF850TET.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF848KLH bam unfiltered alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PQJ, ENCFF643CGH 2135898657 ENCODE Processing Pipeline df7c7951050a71a477240db125d328fd https://www.encodeproject.org/files/ENCFF848KLH/@@download/ENCFF848KLH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF269GKC bam unfiltered alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQE, ENCFF807MUK 942364469 ENCODE Processing Pipeline aa8e0d7923f9a7e1016ac0347e792978 https://www.encodeproject.org/files/ENCFF269GKC/@@download/ENCFF269GKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF635IBY bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQE, ENCFF807MUK 541087843 ENCODE Processing Pipeline 78f8d33313ae4b6816b3bf7222b08a0f https://www.encodeproject.org/files/ENCFF635IBY/@@download/ENCFF635IBY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF417XUU bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PQJ, ENCFF807MUK 1283408178 ENCODE Processing Pipeline 96ac535e7110c3bb9b9b1e3dd8b6986c https://www.encodeproject.org/files/ENCFF417XUU/@@download/ENCFF417XUU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF933SQQ bam unfiltered alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PQJ, ENCFF807MUK 2126865716 ENCODE Processing Pipeline e6c43c7cd443637604a5b5fadea2bdb7 https://www.encodeproject.org/files/ENCFF933SQQ/@@download/ENCFF933SQQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF614MWS bigWig signal p-value ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF850TET 645833126 ENCODE Processing Pipeline d4dc0b95c50fb7e25035e7520a46d617 https://www.encodeproject.org/files/ENCFF614MWS/@@download/ENCFF614MWS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF323LTB bigWig signal p-value ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF449IUJ 591993213 ENCODE Processing Pipeline f57abcedc83ea96ffe8fbb2ad4b7a23a https://www.encodeproject.org/files/ENCFF323LTB/@@download/ENCFF323LTB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF239YXQ bigWig signal p-value ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF449IUJ, ENCFF850TET 828539745 ENCODE Processing Pipeline c91d03c19f0369963003215eb8ff753c https://www.encodeproject.org/files/ENCFF239YXQ/@@download/ENCFF239YXQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF537QIE bigWig fold change over control ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF449IUJ, ENCFF850TET 800661869 ENCODE Processing Pipeline 2596788fb2091e93d75b8315e5819f12 https://www.encodeproject.org/files/ENCFF537QIE/@@download/ENCFF537QIE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF242PEU bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF850TET 5694824 ENCODE Processing Pipeline 0c16efb70da540120fbe92f02fb243ad https://www.encodeproject.org/files/ENCFF242PEU/@@download/ENCFF242PEU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF748AUC bigWig fold change over control ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF850TET 634124511 ENCODE Processing Pipeline b1afe9a2dc4d12f561d9cbb51967eac5 https://www.encodeproject.org/files/ENCFF748AUC/@@download/ENCFF748AUC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF156TSI bigBed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105XMS 13701397 ENCODE Processing Pipeline 694673174b346dfb575d377b22514b76 https://www.encodeproject.org/files/ENCFF156TSI/@@download/ENCFF156TSI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF063EMI bigWig fold change over control ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF449IUJ 338354790 ENCODE Processing Pipeline 8c674cafe640fb28dfff3fe5118946be https://www.encodeproject.org/files/ENCFF063EMI/@@download/ENCFF063EMI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF338WLU bigBed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF242PEU 11288330 ENCODE Processing Pipeline 1cdabf5f372b0bde4823e75cbf4039ca https://www.encodeproject.org/files/ENCFF338WLU/@@download/ENCFF338WLU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF635UNX bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF449IUJ 3843269 ENCODE Processing Pipeline 8e954b63e3fa6e8bc1cd11c503609e5b https://www.encodeproject.org/files/ENCFF635UNX/@@download/ENCFF635UNX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF105XMS bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF449IUJ, ENCFF850TET 6139798 ENCODE Processing Pipeline 27ac7efac3783424180c9354a9a65ec2 https://www.encodeproject.org/files/ENCFF105XMS/@@download/ENCFF105XMS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF154UXU bigBed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF635UNX 8444477 ENCODE Processing Pipeline 691e385d09f1cf02b37e2ea2b6989b2b https://www.encodeproject.org/files/ENCFF154UXU/@@download/ENCFF154UXU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF175VXL bed narrowPeak optimal idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105XMS, ENCFF242PEU, ENCFF419RSJ, ENCFF635UNX 601282 ENCODE Processing Pipeline 7d80ea291ece233a5f075aa389ae04c0 https://www.encodeproject.org/files/ENCFF175VXL/@@download/ENCFF175VXL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF013MUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF636ARM 129177 ENCODE Processing Pipeline b82bd757d9232a9470f588246f31c3cf https://www.encodeproject.org/files/ENCFF013MUF/@@download/ENCFF013MUF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF636ARM bed narrowPeak conservative idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105XMS, ENCFF242PEU, ENCFF419RSJ, ENCFF635UNX 38501 ENCODE Processing Pipeline ba9d5210708ca17ac06662fd03d315a9 https://www.encodeproject.org/files/ENCFF636ARM/@@download/ENCFF636ARM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF050BFU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175VXL 1191013 ENCODE Processing Pipeline 214ef36ac65d9ca8969bb05bd1d72b5d https://www.encodeproject.org/files/ENCFF050BFU/@@download/ENCFF050BFU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF388TRD bigWig signal p-value ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV 641751496 ENCODE Processing Pipeline 5054008fd7c669fd4af8c79f90179408 https://www.encodeproject.org/files/ENCFF388TRD/@@download/ENCFF388TRD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF403LKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF741WKY 1179173 ENCODE Processing Pipeline 78721a78991a68cf4c238b1e6e03feb0 https://www.encodeproject.org/files/ENCFF403LKB/@@download/ENCFF403LKB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF281GAM bigBed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF121SXP 11282976 ENCODE Processing Pipeline dea4b18685320c8dae3113df07a14f05 https://www.encodeproject.org/files/ENCFF281GAM/@@download/ENCFF281GAM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF273NBP bigWig fold change over control ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV 627515208 ENCODE Processing Pipeline 98fecff9179846e52dc452670caf88a4 https://www.encodeproject.org/files/ENCFF273NBP/@@download/ENCFF273NBP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF743EOK bigWig fold change over control ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV, ENCFF635IBY 802090479 ENCODE Processing Pipeline 466d4b91d6a585aa27bbe6238b513135 https://www.encodeproject.org/files/ENCFF743EOK/@@download/ENCFF743EOK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF030ZOK bigBed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF740QPT 13695662 ENCODE Processing Pipeline 9e4aecb5526cf1d9986870d3c4822992 https://www.encodeproject.org/files/ENCFF030ZOK/@@download/ENCFF030ZOK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF109YFI bigBed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF420CVJ 8392070 ENCODE Processing Pipeline e35b75696d47f9603a056a241dbeb882 https://www.encodeproject.org/files/ENCFF109YFI/@@download/ENCFF109YFI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF955ZCL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF330CLZ 128498 ENCODE Processing Pipeline 3d84091182d90ff139352c0d20902ae7 https://www.encodeproject.org/files/ENCFF955ZCL/@@download/ENCFF955ZCL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF463DNO bigWig signal p-value ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF635IBY 592535166 ENCODE Processing Pipeline eddcc0cc4f5276ac8fdb2f4179a9c2bb https://www.encodeproject.org/files/ENCFF463DNO/@@download/ENCFF463DNO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF983HDA bigWig signal p-value ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV, ENCFF635IBY 829046801 ENCODE Processing Pipeline 3b759fb5002758fb62b1b57bd89c5fb0 https://www.encodeproject.org/files/ENCFF983HDA/@@download/ENCFF983HDA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF269FKT bigWig fold change over control ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF635IBY 339302019 ENCODE Processing Pipeline f40b94b94f37347a56f5018939ef1b3b https://www.encodeproject.org/files/ENCFF269FKT/@@download/ENCFF269FKT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF121SXP bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV 5695202 ENCODE Processing Pipeline eb5446d5581a3e921632b223a742a1ba https://www.encodeproject.org/files/ENCFF121SXP/@@download/ENCFF121SXP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF420CVJ bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF635IBY 3845374 ENCODE Processing Pipeline 0d0f8815058560c5cf3f8d737793d7c3 https://www.encodeproject.org/files/ENCFF420CVJ/@@download/ENCFF420CVJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF740QPT bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV, ENCFF635IBY 6143010 ENCODE Processing Pipeline f4d316dbfe4810f593c3d3d70b871ea1 https://www.encodeproject.org/files/ENCFF740QPT/@@download/ENCFF740QPT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF330CLZ bed narrowPeak conservative idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF121SXP, ENCFF420CVJ, ENCFF740QPT 38184 ENCODE Processing Pipeline e0c5e94760dbb11a2e41ca93999aecf2 https://www.encodeproject.org/files/ENCFF330CLZ/@@download/ENCFF330CLZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF741WKY bed narrowPeak optimal idr thresholded peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF121SXP, ENCFF420CVJ, ENCFF740QPT 593220 ENCODE Processing Pipeline 637ee87b99d565855508c0e4d6d3c2d8 https://www.encodeproject.org/files/ENCFF741WKY/@@download/ENCFF741WKY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF356DMG fastq reads ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 624215404 Xiang-Dong Fu, UCSD 05d772422e2976ed598e3e1fd49f77ad SRA:SRR6213122 https://www.encodeproject.org/files/ENCFF356DMG/@@download/ENCFF356DMG.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth ENCFF450ZOR fastq reads ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 574127117 Xiang-Dong Fu, UCSD ee3b80738a48deab8294a448d2d61462 SRA:SRR6213123 https://www.encodeproject.org/files/ENCFF450ZOR/@@download/ENCFF450ZOR.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF488OLY bam unfiltered alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF450ZOR, ENCFF807MUK 740065765 ENCODE Processing Pipeline cafbf05e06e60ffe27a126c71b2a9a85 https://www.encodeproject.org/files/ENCFF488OLY/@@download/ENCFF488OLY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF146SND bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF356DMG, ENCFF643CGH 476711196 ENCODE Processing Pipeline 136c1bd5bf9b79802c2488dad1f40cfa https://www.encodeproject.org/files/ENCFF146SND/@@download/ENCFF146SND.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF560SVR bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF450ZOR, ENCFF643CGH 413750036 ENCODE Processing Pipeline bbe92db76345eeb07f41744e0a62d7b8 https://www.encodeproject.org/files/ENCFF560SVR/@@download/ENCFF560SVR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF609FGI bam unfiltered alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF450ZOR, ENCFF643CGH 742616759 ENCODE Processing Pipeline 1f909c5c4c8174d499faa8a459f3c346 https://www.encodeproject.org/files/ENCFF609FGI/@@download/ENCFF609FGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF369ZUO bam unfiltered alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF356DMG, ENCFF643CGH 815222937 ENCODE Processing Pipeline 83ba7dcf556fa74f593ee2ab6d5f86f2 https://www.encodeproject.org/files/ENCFF369ZUO/@@download/ENCFF369ZUO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF081JMB bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF356DMG, ENCFF807MUK 477463928 ENCODE Processing Pipeline 1b1271acf74ba208c467b108d423046f https://www.encodeproject.org/files/ENCFF081JMB/@@download/ENCFF081JMB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF766UVZ bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF450ZOR, ENCFF807MUK 414407290 ENCODE Processing Pipeline 7baa26e0f37a561a02cb547b3b46808f https://www.encodeproject.org/files/ENCFF766UVZ/@@download/ENCFF766UVZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF713LWG bam unfiltered alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF356DMG, ENCFF807MUK 812490691 ENCODE Processing Pipeline a863a2d4015d54fc343e409c3fd0f72b https://www.encodeproject.org/files/ENCFF713LWG/@@download/ENCFF713LWG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF668RTJ bigWig fold change over control ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF081JMB, ENCFF375WCZ 302520134 ENCODE Processing Pipeline e30a986e8eb6bcb7bbcf830c582b8435 https://www.encodeproject.org/files/ENCFF668RTJ/@@download/ENCFF668RTJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF603ZKA bigWig signal p-value ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF081JMB, ENCFF375WCZ 424981940 ENCODE Processing Pipeline 6fe947f144f25c9d38fbc4d59d44f7aa https://www.encodeproject.org/files/ENCFF603ZKA/@@download/ENCFF603ZKA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF163HCB bigWig fold change over control ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF081JMB, ENCFF375WCZ, ENCFF578XGS, ENCFF766UVZ 681092332 ENCODE Processing Pipeline 5b3e877fc60806d48941f07dfac72dce https://www.encodeproject.org/files/ENCFF163HCB/@@download/ENCFF163HCB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF966PVP bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF766UVZ 5353779 ENCODE Processing Pipeline ee84774d037dfcfcef7d63ceca958ef7 https://www.encodeproject.org/files/ENCFF966PVP/@@download/ENCFF966PVP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF958SKC bigWig signal p-value ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF081JMB, ENCFF375WCZ, ENCFF578XGS, ENCFF766UVZ 743601260 ENCODE Processing Pipeline 55ce1f3d3413a8d0e6e903680e072dfb https://www.encodeproject.org/files/ENCFF958SKC/@@download/ENCFF958SKC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF623AIB bigWig signal p-value ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF766UVZ 488963955 ENCODE Processing Pipeline aef45904368d2f61f526be4fb260c943 https://www.encodeproject.org/files/ENCFF623AIB/@@download/ENCFF623AIB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF940WSO bigWig fold change over control ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF766UVZ 289953888 ENCODE Processing Pipeline 8282c2cc50a9de2f612c5f299ccd4d6b https://www.encodeproject.org/files/ENCFF940WSO/@@download/ENCFF940WSO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF385WYK bigBed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF834INF 13165391 ENCODE Processing Pipeline f77614807f34f10582338a3363621dc9 https://www.encodeproject.org/files/ENCFF385WYK/@@download/ENCFF385WYK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF904PNO bigBed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF966PVP 12985169 ENCODE Processing Pipeline e8b97c6878536110f9e7b6dbe32f3dc4 https://www.encodeproject.org/files/ENCFF904PNO/@@download/ENCFF904PNO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF866NDX bed narrowPeak conservative idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF158VHL, ENCFF834INF, ENCFF966PVP 382336 ENCODE Processing Pipeline e10a66e839bc5ca8293fd2b26a1cbe53 https://www.encodeproject.org/files/ENCFF866NDX/@@download/ENCFF866NDX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF158VHL bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF081JMB, ENCFF375WCZ 5459381 ENCODE Processing Pipeline f974231817794c97d3056a9f97caa2be https://www.encodeproject.org/files/ENCFF158VHL/@@download/ENCFF158VHL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF834INF bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF081JMB, ENCFF375WCZ, ENCFF578XGS, ENCFF766UVZ 6592642 ENCODE Processing Pipeline a4364080c83ad8a3829ce9a7bebd511b https://www.encodeproject.org/files/ENCFF834INF/@@download/ENCFF834INF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF147KNG bigBed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF158VHL 12953446 ENCODE Processing Pipeline b273047f75d29d015aa4b096992bca8e https://www.encodeproject.org/files/ENCFF147KNG/@@download/ENCFF147KNG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF233MID bed narrowPeak optimal idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF158VHL, ENCFF834INF, ENCFF966PVP 404602 ENCODE Processing Pipeline 1000e5ae167a7e197f2dbedbfc166b4b https://www.encodeproject.org/files/ENCFF233MID/@@download/ENCFF233MID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF475MLF bigBed narrowPeak conservative idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF866NDX 868278 ENCODE Processing Pipeline 03c3ba8441decf095d3ee12bc3807583 https://www.encodeproject.org/files/ENCFF475MLF/@@download/ENCFF475MLF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF765KIY bigBed narrowPeak optimal idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF233MID 908463 ENCODE Processing Pipeline 8a4467693d913f5826d0f191ca0fe3ce https://www.encodeproject.org/files/ENCFF765KIY/@@download/ENCFF765KIY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF086QIU bigWig signal p-value ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF560SVR 460893799 ENCODE Processing Pipeline b2c90380ac84d242ccb46862233c559b https://www.encodeproject.org/files/ENCFF086QIU/@@download/ENCFF086QIU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF755UKJ bigWig fold change over control ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF560SVR 302568990 ENCODE Processing Pipeline 553e6e469268fbf9245250ce415e62ce https://www.encodeproject.org/files/ENCFF755UKJ/@@download/ENCFF755UKJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF955LMX bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF279QEN, ENCFF560SVR 5345188 ENCODE Processing Pipeline 45ad8c4ce12793a1c151219fcd199e65 https://www.encodeproject.org/files/ENCFF955LMX/@@download/ENCFF955LMX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF602EKM bigBed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF918GVL 12948063 ENCODE Processing Pipeline aaaa5ccf02bb372490b41f3f5d570097 https://www.encodeproject.org/files/ENCFF602EKM/@@download/ENCFF602EKM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF248JJU bigWig signal p-value ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF146SND, ENCFF253UKR, ENCFF279QEN, ENCFF560SVR 773440648 ENCODE Processing Pipeline ad7c696a93fa73edc2cc6622f0f431fa https://www.encodeproject.org/files/ENCFF248JJU/@@download/ENCFF248JJU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF244PMW bigWig signal p-value ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF146SND, ENCFF253UKR 398116862 ENCODE Processing Pipeline 6f328b2e40cd83194745d203a6e0fd66 https://www.encodeproject.org/files/ENCFF244PMW/@@download/ENCFF244PMW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF212SHA bigWig fold change over control ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF146SND, ENCFF253UKR 303637791 ENCODE Processing Pipeline b555e64951193faf7ac427d49bd511c2 https://www.encodeproject.org/files/ENCFF212SHA/@@download/ENCFF212SHA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF413XGH bed narrowPeak conservative idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF437LMW, ENCFF918GVL, ENCFF955LMX 382122 ENCODE Processing Pipeline 1b957e34f29ee05a5f4f743ffeb728fb https://www.encodeproject.org/files/ENCFF413XGH/@@download/ENCFF413XGH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF331ZDS bigWig fold change over control ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF146SND, ENCFF253UKR, ENCFF279QEN, ENCFF560SVR 679148543 ENCODE Processing Pipeline 33861242aaa143ec90dbdb518e56f016 https://www.encodeproject.org/files/ENCFF331ZDS/@@download/ENCFF331ZDS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF437LMW bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF146SND, ENCFF253UKR, ENCFF279QEN, ENCFF560SVR 6538258 ENCODE Processing Pipeline f0618b6da215c5d4ae7e8995f088f12f https://www.encodeproject.org/files/ENCFF437LMW/@@download/ENCFF437LMW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF712BYL bigBed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF955LMX 12989750 ENCODE Processing Pipeline fe2ec96b621815cb348ed7fe2af1a504 https://www.encodeproject.org/files/ENCFF712BYL/@@download/ENCFF712BYL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF918GVL bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF146SND, ENCFF253UKR 5443644 ENCODE Processing Pipeline 68f90c7e3641688b7035a1fcd6e5a9fa https://www.encodeproject.org/files/ENCFF918GVL/@@download/ENCFF918GVL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF074MUO bigBed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF437LMW 13146448 ENCODE Processing Pipeline f50fd8fddb2a6b9487034b74e781d941 https://www.encodeproject.org/files/ENCFF074MUO/@@download/ENCFF074MUO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF039CUI bed narrowPeak optimal idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF437LMW, ENCFF918GVL, ENCFF955LMX 414976 ENCODE Processing Pipeline 5427dc20f78a4755dbbd13281904f3ea https://www.encodeproject.org/files/ENCFF039CUI/@@download/ENCFF039CUI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF684GAM bigBed narrowPeak optimal idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF039CUI 929522 ENCODE Processing Pipeline 8bf209068e611f29918f1851a425561b https://www.encodeproject.org/files/ENCFF684GAM/@@download/ENCFF684GAM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF449HYS bigBed narrowPeak conservative idr thresholded peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF413XGH 871188 ENCODE Processing Pipeline 6ffc071f5f9f61578e4dcec8028a74f8 https://www.encodeproject.org/files/ENCFF449HYS/@@download/ENCFF449HYS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF292OSF fastq reads ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 1877702433 Xiang-Dong Fu, UCSD ce57cb7ae47a579ac4e1b6cc2c153dc1 https://www.encodeproject.org/files/ENCFF292OSF/@@download/ENCFF292OSF.fastq.gz Illumina HiSeq 2500 /files/ENCFF061XKR/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF321VUE fastq reads ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 1183029354 Xiang-Dong Fu, UCSD a7263392311587b79e9abb3e30a1221d https://www.encodeproject.org/files/ENCFF321VUE/@@download/ENCFF321VUE.fastq.gz Illumina HiSeq 2500 /files/ENCFF605JOL/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF427GLC bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF321VUE, ENCFF807MUK 412287405 ENCODE Processing Pipeline 883163a183b5f2ff0d6f029ca25a975f https://www.encodeproject.org/files/ENCFF427GLC/@@download/ENCFF427GLC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF943MHS bam unfiltered alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF321VUE, ENCFF643CGH 1323918374 ENCODE Processing Pipeline 51ab0aa8d933041a93d852c900e3726d https://www.encodeproject.org/files/ENCFF943MHS/@@download/ENCFF943MHS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF273BMN bam unfiltered alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF321VUE, ENCFF807MUK 1320685336 ENCODE Processing Pipeline 01cf18ad5892498f4caada343a09d9b6 https://www.encodeproject.org/files/ENCFF273BMN/@@download/ENCFF273BMN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF787FUW bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF321VUE, ENCFF643CGH 411716544 ENCODE Processing Pipeline 594ac486846bc3d8f5c7842fda819d87 https://www.encodeproject.org/files/ENCFF787FUW/@@download/ENCFF787FUW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF897BJD bam unfiltered alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF292OSF, ENCFF807MUK 1949769746 ENCODE Processing Pipeline ba2132dd5d705b99842e0ae46b860b33 https://www.encodeproject.org/files/ENCFF897BJD/@@download/ENCFF897BJD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF995FJU bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF292OSF, ENCFF807MUK 399504468 ENCODE Processing Pipeline 46fda4a53c96426fa8475c942130b7ea https://www.encodeproject.org/files/ENCFF995FJU/@@download/ENCFF995FJU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF187VTL bam unfiltered alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF292OSF, ENCFF643CGH 1956434723 ENCODE Processing Pipeline 09b2aa4a676e5648d9d0b422649d6277 https://www.encodeproject.org/files/ENCFF187VTL/@@download/ENCFF187VTL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF661CTX bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF292OSF, ENCFF643CGH 398926193 ENCODE Processing Pipeline 726b0c9ef606b3a6e7c4d934842ec368 https://www.encodeproject.org/files/ENCFF661CTX/@@download/ENCFF661CTX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF778VAW bigWig signal p-value ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF427GLC, ENCFF462KWM 480654039 ENCODE Processing Pipeline 313af9fc7a34397e99b52a0bc2d1d5df https://www.encodeproject.org/files/ENCFF778VAW/@@download/ENCFF778VAW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF769LFO bigWig signal p-value ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF995FJU 416560702 ENCODE Processing Pipeline 3543fded50380bdcfb769f06f39cd571 https://www.encodeproject.org/files/ENCFF769LFO/@@download/ENCFF769LFO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF401IWU bigWig fold change over control ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF427GLC, ENCFF462KWM 302960530 ENCODE Processing Pipeline 87263cfb2e0f2fbd56838c523e8c6dc3 https://www.encodeproject.org/files/ENCFF401IWU/@@download/ENCFF401IWU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF441TYX bigWig fold change over control ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF995FJU 312698488 ENCODE Processing Pipeline 83367193d967ca5ce11f22efee47b4ac https://www.encodeproject.org/files/ENCFF441TYX/@@download/ENCFF441TYX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF101MNR bigWig signal p-value ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF427GLC, ENCFF462KWM, ENCFF995FJU 953444757 ENCODE Processing Pipeline 405d272a68364fecfb3902e3ba969d0a https://www.encodeproject.org/files/ENCFF101MNR/@@download/ENCFF101MNR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF592QMX bigWig fold change over control ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF427GLC, ENCFF462KWM, ENCFF995FJU 723750343 ENCODE Processing Pipeline 7cc12ad3a84bff77508a4997ade536ef https://www.encodeproject.org/files/ENCFF592QMX/@@download/ENCFF592QMX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF505FAJ bigBed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF482ZCR 13016696 ENCODE Processing Pipeline 2b74ae591527a6a5cf94d13b28793903 https://www.encodeproject.org/files/ENCFF505FAJ/@@download/ENCFF505FAJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF026ZCX bed narrowPeak conservative idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF252CYF, ENCFF482ZCR, ENCFF483RRM 456816 ENCODE Processing Pipeline 70edc4391231224c8203e6da5ce65373 https://www.encodeproject.org/files/ENCFF026ZCX/@@download/ENCFF026ZCX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF482ZCR bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF995FJU 5673202 ENCODE Processing Pipeline 114d490d19de1ef1b233e181f964c94e https://www.encodeproject.org/files/ENCFF482ZCR/@@download/ENCFF482ZCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF491WYJ bigBed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF252CYF 12905976 ENCODE Processing Pipeline 91aa612e0a4e875d4e9239f51b7f71ea https://www.encodeproject.org/files/ENCFF491WYJ/@@download/ENCFF491WYJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF863GUM bigBed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF483RRM 13086020 ENCODE Processing Pipeline 02597029d2553e1a44967790bc0aa9aa https://www.encodeproject.org/files/ENCFF863GUM/@@download/ENCFF863GUM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF483RRM bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF427GLC, ENCFF462KWM, ENCFF995FJU 6678139 ENCODE Processing Pipeline ef1acc0b9499ae7c32371c84e4ff326d https://www.encodeproject.org/files/ENCFF483RRM/@@download/ENCFF483RRM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF252CYF bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF427GLC, ENCFF462KWM 5564124 ENCODE Processing Pipeline 67ede3d714eb75d1ad393010e2201681 https://www.encodeproject.org/files/ENCFF252CYF/@@download/ENCFF252CYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF488SGU bigBed narrowPeak conservative idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF026ZCX 891896 ENCODE Processing Pipeline 19474b80b9684b001c01277e5f08d7d5 https://www.encodeproject.org/files/ENCFF488SGU/@@download/ENCFF488SGU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF883CDF bed narrowPeak optimal idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF252CYF, ENCFF482ZCR, ENCFF483RRM 472671 ENCODE Processing Pipeline 0a8d51d05c44c4ec3e4ed88778b5f075 https://www.encodeproject.org/files/ENCFF883CDF/@@download/ENCFF883CDF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF910TET bigBed narrowPeak optimal idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF883CDF 1133167 ENCODE Processing Pipeline a4bca8d27ecb81ff0a3b7d9920eeb167 https://www.encodeproject.org/files/ENCFF910TET/@@download/ENCFF910TET.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF498ADL bigWig signal p-value ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661CTX, ENCFF719EDQ, ENCFF787FUW, ENCFF874GUL 836903192 ENCODE Processing Pipeline 8bbd4a0f7a77a6245e68512be2ef3249 https://www.encodeproject.org/files/ENCFF498ADL/@@download/ENCFF498ADL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155CTJ bigWig signal p-value ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF719EDQ, ENCFF787FUW 452392362 ENCODE Processing Pipeline ea09352534adbadde9b19c77c2c1480b https://www.encodeproject.org/files/ENCFF155CTJ/@@download/ENCFF155CTJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF387YNH bigWig signal p-value ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF661CTX, ENCFF874GUL 454009914 ENCODE Processing Pipeline 9b0ed80dcfa4c245fac37b06e60c32ed https://www.encodeproject.org/files/ENCFF387YNH/@@download/ENCFF387YNH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF093CYZ bigWig fold change over control ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF719EDQ, ENCFF787FUW 301474234 ENCODE Processing Pipeline af4ff8bd244c7bf4baf3a2f07c0c5928 https://www.encodeproject.org/files/ENCFF093CYZ/@@download/ENCFF093CYZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF994DCW bigWig fold change over control ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF661CTX, ENCFF874GUL 306858588 ENCODE Processing Pipeline a4f95ad222558e24f998f213366c989d https://www.encodeproject.org/files/ENCFF994DCW/@@download/ENCFF994DCW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF619VKF bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF719EDQ, ENCFF787FUW 5558000 ENCODE Processing Pipeline e6366f1397e85250b3b19c374b93941e https://www.encodeproject.org/files/ENCFF619VKF/@@download/ENCFF619VKF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF043DRX bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF661CTX, ENCFF874GUL 5623600 ENCODE Processing Pipeline 29ff1eef8e7a6d4bfca31c0ebea0e323 https://www.encodeproject.org/files/ENCFF043DRX/@@download/ENCFF043DRX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF236DXP bigWig fold change over control ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661CTX, ENCFF719EDQ, ENCFF787FUW, ENCFF874GUL 709768643 ENCODE Processing Pipeline aa335c2c73ae8670277bbd0d06ece9e7 https://www.encodeproject.org/files/ENCFF236DXP/@@download/ENCFF236DXP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF906QNP bigBed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF043DRX 13002485 ENCODE Processing Pipeline 32a543fd3f78c9173457ba252ecafcb6 https://www.encodeproject.org/files/ENCFF906QNP/@@download/ENCFF906QNP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF043QFM bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661CTX, ENCFF719EDQ, ENCFF787FUW, ENCFF874GUL 6672982 ENCODE Processing Pipeline ad86e5e2d6993e24ca70d8b19d9bdcf7 https://www.encodeproject.org/files/ENCFF043QFM/@@download/ENCFF043QFM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF842MNK bigBed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF619VKF 12912447 ENCODE Processing Pipeline e491f39d0ad6c8c20f423771c83d0106 https://www.encodeproject.org/files/ENCFF842MNK/@@download/ENCFF842MNK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF922AYX bigBed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF043QFM 13090630 ENCODE Processing Pipeline 43a177ddd7b5bb06269c795f7334e762 https://www.encodeproject.org/files/ENCFF922AYX/@@download/ENCFF922AYX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF925TIA bed narrowPeak conservative idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF043DRX, ENCFF043QFM, ENCFF419RSJ, ENCFF619VKF 457912 ENCODE Processing Pipeline 180d5667c9f01e1f5777746e8363ff99 https://www.encodeproject.org/files/ENCFF925TIA/@@download/ENCFF925TIA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF873JXV bigBed narrowPeak conservative idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF925TIA 894627 ENCODE Processing Pipeline 10933804ab9b8ef124f3630c76da1fea https://www.encodeproject.org/files/ENCFF873JXV/@@download/ENCFF873JXV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF890KTX bed narrowPeak optimal idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF043DRX, ENCFF043QFM, ENCFF419RSJ, ENCFF619VKF 477478 ENCODE Processing Pipeline e3dd00735addc0c7c0d3360a7d06d74b https://www.encodeproject.org/files/ENCFF890KTX/@@download/ENCFF890KTX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF952XAB bigBed narrowPeak optimal idr thresholded peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF890KTX 1142444 ENCODE Processing Pipeline d006c4cd2386ca7f76b4c7dae5122a05 https://www.encodeproject.org/files/ENCFF952XAB/@@download/ENCFF952XAB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000OJR bigBed broadPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAE 380265 Richard Myers, HAIB 7e9c0b3b68aaae266bcecc9844ab8442 https://www.encodeproject.org/files/ENCFF000OJR/@@download/ENCFF000OJR.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OJS bigBed broadPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAF 231888 Richard Myers, HAIB dabdab22c2d8cd302ba90a53230fde86 https://www.encodeproject.org/files/ENCFF000OJS/@@download/ENCFF000OJS.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OJT bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OKD 820270217 Richard Myers, HAIB 6e890286f3c38bdc6c92a18eb0b1c49a https://www.encodeproject.org/files/ENCFF000OJT/@@download/ENCFF000OJT.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OJV bigWig raw signal ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 27409416 Richard Myers, HAIB dbc99977ee6f6c901b560471bc4092e0 https://www.encodeproject.org/files/ENCFF000OJV/@@download/ENCFF000OJV.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OJW bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OKG 1236381620 Richard Myers, HAIB 4e16e6bb944822cab96800f8aafa47f3 https://www.encodeproject.org/files/ENCFF000OJW/@@download/ENCFF000OJW.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OJX bigWig raw signal ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 14841336 Richard Myers, HAIB d24e4533a4e58d3d96d4aacc845ab341 https://www.encodeproject.org/files/ENCFF000OJX/@@download/ENCFF000OJX.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OKD fastq reads ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 826202355 Richard Myers, HAIB f3ec022ec04e0a6e740a74d15074ff24 https://www.encodeproject.org/files/ENCFF000OKD/@@download/ENCFF000OKD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF000OKG fastq reads ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1619015503 Richard Myers, HAIB 84702fa7c60f5a44493a9dfcd351042f https://www.encodeproject.org/files/ENCFF000OKG/@@download/ENCFF000OKG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF001UAE bed broadPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 181374 Richard Myers, HAIB 66851b8e11711a87fe277d37d54e1e82 https://www.encodeproject.org/files/ENCFF001UAE/@@download/ENCFF001UAE.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UAF bed broadPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 126918 Richard Myers, HAIB ccb60447192be8d8f207ec3a66bc0f07 https://www.encodeproject.org/files/ENCFF001UAF/@@download/ENCFF001UAF.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002CIK bed narrowPeak optimal idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 303968 ENCODE Consortium Analysis Working Group 7ab7ce6c64786d76a1fbf4222d0258a5 https://www.encodeproject.org/files/ENCFF002CIK/@@download/ENCFF002CIK.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF137HUR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIK 835551 ENCODE Consortium bbafe2a20095d29b2e12387b85d4a299 https://www.encodeproject.org/files/ENCFF137HUR/@@download/ENCFF137HUR.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF347EJS bam unfiltered alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKD, ENCFF643CGH 1074116644 ENCODE Processing Pipeline 6b61132cfaf1891d3221ad6aa59b0639 https://www.encodeproject.org/files/ENCFF347EJS/@@download/ENCFF347EJS.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF600IBV bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKD, ENCFF643CGH 655843932 ENCODE Processing Pipeline 106b86eb7637353ea4929b0081d1cecf https://www.encodeproject.org/files/ENCFF600IBV/@@download/ENCFF600IBV.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF837KRT bam unfiltered alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKG, ENCFF643CGH 1977870559 ENCODE Processing Pipeline cf9194464a96951e4e60a8c632ce6d84 https://www.encodeproject.org/files/ENCFF837KRT/@@download/ENCFF837KRT.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF415TYP bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKG, ENCFF643CGH 890678514 ENCODE Processing Pipeline dbfe0b3094d8bf2dd39a1ad1be25d207 https://www.encodeproject.org/files/ENCFF415TYP/@@download/ENCFF415TYP.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF749CGY bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKD, ENCFF807MUK 652291534 ENCODE Processing Pipeline 66325c346328f860bf40382a705bc6f1 https://www.encodeproject.org/files/ENCFF749CGY/@@download/ENCFF749CGY.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF519IFL bam unfiltered alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKD, ENCFF807MUK 1070415589 ENCODE Processing Pipeline e786988b3273173ea396be4acfb02b97 https://www.encodeproject.org/files/ENCFF519IFL/@@download/ENCFF519IFL.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF898ZAD bam unfiltered alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKG, ENCFF807MUK 1970724948 ENCODE Processing Pipeline 2d553de70faf4f8cc57e6c1e9d26acf1 https://www.encodeproject.org/files/ENCFF898ZAD/@@download/ENCFF898ZAD.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF100AQB bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKG, ENCFF807MUK 887311453 ENCODE Processing Pipeline 6d7d89ffb6587ac4cc2b717d4ff67150 https://www.encodeproject.org/files/ENCFF100AQB/@@download/ENCFF100AQB.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF010DPP bigWig signal p-value ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF415TYP 331804576 ENCODE Processing Pipeline 0c8901e19f76e57be0a7b1ec9972d043 https://www.encodeproject.org/files/ENCFF010DPP/@@download/ENCFF010DPP.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF919CCO bigWig fold change over control ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF415TYP 305397895 ENCODE Processing Pipeline 2ff85edfc87dc10c922abc713a95f259 https://www.encodeproject.org/files/ENCFF919CCO/@@download/ENCFF919CCO.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF738KKK bigWig signal p-value ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF600IBV 324840899 ENCODE Processing Pipeline c854714f138fd4022a9d5132d4211608 https://www.encodeproject.org/files/ENCFF738KKK/@@download/ENCFF738KKK.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF146FMH bigWig signal p-value ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF415TYP, ENCFF600IBV 326978486 ENCODE Processing Pipeline ca762d0411b8363a4c7cc378e6a3dfd9 https://www.encodeproject.org/files/ENCFF146FMH/@@download/ENCFF146FMH.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF312AML bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF415TYP 4384926 ENCODE Processing Pipeline 4fd552ea5b095960fbba34dd3f292515 https://www.encodeproject.org/files/ENCFF312AML/@@download/ENCFF312AML.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF630ZKZ bigWig fold change over control ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF415TYP, ENCFF600IBV 492241262 ENCODE Processing Pipeline 1386eac63cb97aafdc40977ace5a1680 https://www.encodeproject.org/files/ENCFF630ZKZ/@@download/ENCFF630ZKZ.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF231EBY bigWig fold change over control ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF600IBV 251465300 ENCODE Processing Pipeline 0f4944e2f3afd000386d829898a23a17 https://www.encodeproject.org/files/ENCFF231EBY/@@download/ENCFF231EBY.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF606XRT bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF600IBV 4381263 ENCODE Processing Pipeline eb9c13f76261ca378a6645643cc33288 https://www.encodeproject.org/files/ENCFF606XRT/@@download/ENCFF606XRT.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF593OOT bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF415TYP, ENCFF600IBV 5024882 ENCODE Processing Pipeline f2013d6e6cb9680d99159bd52c565e92 https://www.encodeproject.org/files/ENCFF593OOT/@@download/ENCFF593OOT.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF807BTH bigBed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593OOT 11035813 ENCODE Processing Pipeline 1e9605273749a793f07c8ae80f3a5530 https://www.encodeproject.org/files/ENCFF807BTH/@@download/ENCFF807BTH.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF471NIK bed narrowPeak optimal idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF312AML, ENCFF419RSJ, ENCFF593OOT, ENCFF606XRT 268278 ENCODE Processing Pipeline a47b1418b60a01ad0149433e5222472d https://www.encodeproject.org/files/ENCFF471NIK/@@download/ENCFF471NIK.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF272AJS bigBed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF606XRT 10465966 ENCODE Processing Pipeline 40d3fa27d658df6d3b8d126ca23be22c https://www.encodeproject.org/files/ENCFF272AJS/@@download/ENCFF272AJS.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF731LNY bigBed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF312AML 10557950 ENCODE Processing Pipeline 809ae5bd90bb786f728f58da7d155e20 https://www.encodeproject.org/files/ENCFF731LNY/@@download/ENCFF731LNY.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF851ESY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF667CNQ 572672 ENCODE Processing Pipeline 51a6412172a6eb1fdb635f696c6dadf8 https://www.encodeproject.org/files/ENCFF851ESY/@@download/ENCFF851ESY.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF200TIZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF471NIK 589979 ENCODE Processing Pipeline 6177f7814970e33ba18214912341b579 https://www.encodeproject.org/files/ENCFF200TIZ/@@download/ENCFF200TIZ.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF667CNQ bed narrowPeak conservative idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF312AML, ENCFF419RSJ, ENCFF593OOT, ENCFF606XRT 257873 ENCODE Processing Pipeline 93d79f7b36905dc02310284d6fb2d76e https://www.encodeproject.org/files/ENCFF667CNQ/@@download/ENCFF667CNQ.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF781SCC bigWig signal p-value ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100AQB, ENCFF749CGY, ENCFF864ASU 328232370 ENCODE Processing Pipeline 1fba17553cd87405c18d0bf753c063b9 https://www.encodeproject.org/files/ENCFF781SCC/@@download/ENCFF781SCC.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF754WAV bigWig signal p-value ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100AQB, ENCFF864ASU 333234031 ENCODE Processing Pipeline 6c9be4c31491694b28c563cc89782770 https://www.encodeproject.org/files/ENCFF754WAV/@@download/ENCFF754WAV.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF726JVR bigWig fold change over control ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100AQB, ENCFF864ASU 305274101 ENCODE Processing Pipeline fba6bdd63f8d22a99fdbdd3cf452abcd https://www.encodeproject.org/files/ENCFF726JVR/@@download/ENCFF726JVR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF889RVT bigWig signal p-value ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF749CGY, ENCFF864ASU 279387035 ENCODE Processing Pipeline 402fa33c52054f92a8b7dd2526078dfa https://www.encodeproject.org/files/ENCFF889RVT/@@download/ENCFF889RVT.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF810ERB bigWig fold change over control ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF749CGY, ENCFF864ASU 253891954 ENCODE Processing Pipeline 832054d803e81da760c9bb88420e90d1 https://www.encodeproject.org/files/ENCFF810ERB/@@download/ENCFF810ERB.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF994IJB bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF749CGY, ENCFF864ASU 4395024 ENCODE Processing Pipeline fef3492e5f3a79eafdc53357e6a43d7e https://www.encodeproject.org/files/ENCFF994IJB/@@download/ENCFF994IJB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF056DWF bigWig fold change over control ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100AQB, ENCFF749CGY, ENCFF864ASU 489907599 ENCODE Processing Pipeline 8e19bc6e1ba9b6b2e455b1572e622a1a https://www.encodeproject.org/files/ENCFF056DWF/@@download/ENCFF056DWF.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF257RXE bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100AQB, ENCFF864ASU 4412393 ENCODE Processing Pipeline 2fde7dc0594fe5a62bbdd81b2bbfc518 https://www.encodeproject.org/files/ENCFF257RXE/@@download/ENCFF257RXE.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF771YGO bigBed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF257RXE 10578342 ENCODE Processing Pipeline 5003bc8f54407a8a9f31761775e5d9af https://www.encodeproject.org/files/ENCFF771YGO/@@download/ENCFF771YGO.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF239ACB bed narrowPeak conservative idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF257RXE, ENCFF893QMD, ENCFF994IJB 257731 ENCODE Processing Pipeline db2bb859316238b6ef60f1680e2b7089 https://www.encodeproject.org/files/ENCFF239ACB/@@download/ENCFF239ACB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF333KHT bigBed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF994IJB 10432485 ENCODE Processing Pipeline 15e673ea025a2e2e13754001e8c33999 https://www.encodeproject.org/files/ENCFF333KHT/@@download/ENCFF333KHT.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF893QMD bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100AQB, ENCFF749CGY, ENCFF864ASU 5023108 ENCODE Processing Pipeline cf1678eb1f7d496d9a88f7ce95e2ce66 https://www.encodeproject.org/files/ENCFF893QMD/@@download/ENCFF893QMD.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF862MEA bigBed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF893QMD 11031357 ENCODE Processing Pipeline c3d300084416664331251ac0ad7cd43f https://www.encodeproject.org/files/ENCFF862MEA/@@download/ENCFF862MEA.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF064DYK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF239ACB 571842 ENCODE Processing Pipeline 29f00a58bac537c47f145b1a0a5e8641 https://www.encodeproject.org/files/ENCFF064DYK/@@download/ENCFF064DYK.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF195IKR bed narrowPeak optimal idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF257RXE, ENCFF893QMD, ENCFF994IJB 269898 ENCODE Processing Pipeline ff7eec22f7f6ea26a65ebf19c5976fda https://www.encodeproject.org/files/ENCFF195IKR/@@download/ENCFF195IKR.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF395HER bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195IKR 591267 ENCODE Processing Pipeline c6cc50526930c88ca64ba15051f0b222 https://www.encodeproject.org/files/ENCFF395HER/@@download/ENCFF395HER.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF238IYZ fastq reads ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF203LDU 2957145081 Michael Snyder, Stanford 7abab00ba9ecfa89aeb8ed931b163b1e SRA:SRR6213726 https://www.encodeproject.org/files/ENCFF238IYZ/@@download/ENCFF238IYZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released ENCFF256ZUF fastq reads ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF090VRQ 2432745460 Michael Snyder, Stanford 9d227330be0ccb89da65b5401080d3f0 SRA:SRR6213725 https://www.encodeproject.org/files/ENCFF256ZUF/@@download/ENCFF256ZUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released ENCFF090VRQ fastq reads ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF256ZUF 2474128225 Michael Snyder, Stanford 008f138f172e3f26431136dd9e5398f4 SRA:SRR6213725 https://www.encodeproject.org/files/ENCFF090VRQ/@@download/ENCFF090VRQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released ENCFF203LDU fastq reads ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF238IYZ 3001902871 Michael Snyder, Stanford c2badbf4b77b902da487abc3a7385177 SRA:SRR6213726 https://www.encodeproject.org/files/ENCFF203LDU/@@download/ENCFF203LDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released ENCFF684LTP bam unfiltered alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF203LDU, ENCFF238IYZ, ENCFF643CGH 6334132381 ENCODE Processing Pipeline b032603275873e88f7043a4105b33bb2 https://www.encodeproject.org/files/ENCFF684LTP/@@download/ENCFF684LTP.bam GRCh38 released ENCFF334NMV bam unfiltered alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF090VRQ, ENCFF256ZUF, ENCFF643CGH 5312343928 ENCODE Processing Pipeline 4483b978fcae8300736c85657420013b https://www.encodeproject.org/files/ENCFF334NMV/@@download/ENCFF334NMV.bam GRCh38 released ENCFF808QZH bam unfiltered alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF090VRQ, ENCFF256ZUF, ENCFF807MUK 5306660927 ENCODE Processing Pipeline ca55cb594322a6fedb8be90fbcbe0ee2 https://www.encodeproject.org/files/ENCFF808QZH/@@download/ENCFF808QZH.bam hg19 released ENCFF307ZMX bam unfiltered alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF203LDU, ENCFF238IYZ, ENCFF807MUK 6328061297 ENCODE Processing Pipeline 0b834976754a658cea14194bf58be612 https://www.encodeproject.org/files/ENCFF307ZMX/@@download/ENCFF307ZMX.bam hg19 released ENCFF940TNY bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF090VRQ, ENCFF256ZUF, ENCFF807MUK 4287809086 ENCODE Processing Pipeline 083dc96d7281cb51c7bbe61b62a09d28 https://www.encodeproject.org/files/ENCFF940TNY/@@download/ENCFF940TNY.bam hg19 released ENCFF473LBU bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF090VRQ, ENCFF256ZUF, ENCFF643CGH 4291365139 ENCODE Processing Pipeline 12098302fa1c5595351596fc236c9073 https://www.encodeproject.org/files/ENCFF473LBU/@@download/ENCFF473LBU.bam GRCh38 released ENCFF154KUY bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF203LDU, ENCFF238IYZ, ENCFF643CGH 5184903971 ENCODE Processing Pipeline 6ba0fb8a1a1bcefa7955adaa6f859b9b https://www.encodeproject.org/files/ENCFF154KUY/@@download/ENCFF154KUY.bam GRCh38 released ENCFF758IAE bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF203LDU, ENCFF238IYZ, ENCFF807MUK 5179970495 ENCODE Processing Pipeline ec006c07f19a7286528c56eb7d3d210c https://www.encodeproject.org/files/ENCFF758IAE/@@download/ENCFF758IAE.bam hg19 released ENCFF885YBC bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF940TNY 6671120 ENCODE Processing Pipeline 3c9b0642721801fa34d7567481bd8f30 https://www.encodeproject.org/files/ENCFF885YBC/@@download/ENCFF885YBC.bed.gz hg19 released ENCFF413NLP bigBed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF120JHT 13676720 ENCODE Processing Pipeline e50460c2fc449ce9a1bcc0686848b02b https://www.encodeproject.org/files/ENCFF413NLP/@@download/ENCFF413NLP.bigBed hg19 released ENCFF469ATT bigBed narrowPeak conservative idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF202JYJ 1674581 ENCODE Processing Pipeline 2e96d1c2995ed6c52f1f9fa37fe2181c https://www.encodeproject.org/files/ENCFF469ATT/@@download/ENCFF469ATT.bigBed hg19 released ENCFF262CZR bigWig signal p-value ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE 1311954420 ENCODE Processing Pipeline bbb5df5b6c02a45a50a4a6b521bc20c3 https://www.encodeproject.org/files/ENCFF262CZR/@@download/ENCFF262CZR.bigWig hg19 released ENCFF854ZPL bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE, ENCFF940TNY 7100970 ENCODE Processing Pipeline 502e4dd73f054e4daa26f7f69992c9de https://www.encodeproject.org/files/ENCFF854ZPL/@@download/ENCFF854ZPL.bed.gz hg19 released ENCFF814CRK bigWig signal p-value ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE, ENCFF940TNY 1509825133 ENCODE Processing Pipeline 4f553e8988202278ec01d6e10372d153 https://www.encodeproject.org/files/ENCFF814CRK/@@download/ENCFF814CRK.bigWig hg19 released ENCFF321EPM bigWig fold change over control ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE, ENCFF940TNY 1730031133 ENCODE Processing Pipeline 256779a669b6c2f4b24828412752ef48 https://www.encodeproject.org/files/ENCFF321EPM/@@download/ENCFF321EPM.bigWig hg19 released ENCFF504UNW bigBed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF885YBC 13680240 ENCODE Processing Pipeline 8464c970c4117fca76eafca6fd92457c https://www.encodeproject.org/files/ENCFF504UNW/@@download/ENCFF504UNW.bigBed hg19 released ENCFF202JYJ bed narrowPeak conservative idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF120JHT, ENCFF854ZPL, ENCFF885YBC 861057 ENCODE Processing Pipeline 7e1ff185b0298af44babe942b8646511 https://www.encodeproject.org/files/ENCFF202JYJ/@@download/ENCFF202JYJ.bed.gz hg19 released ENCFF655XAU bigWig fold change over control ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE 1272921415 ENCODE Processing Pipeline d6dac335593a67e557c9322ba0599647 https://www.encodeproject.org/files/ENCFF655XAU/@@download/ENCFF655XAU.bigWig hg19 released ENCFF404ACT bigWig signal p-value ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF940TNY 1128707230 ENCODE Processing Pipeline 8f262cb22637ef0c8561c26afe876547 https://www.encodeproject.org/files/ENCFF404ACT/@@download/ENCFF404ACT.bigWig hg19 released ENCFF193PDR bigBed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF854ZPL 13682283 ENCODE Processing Pipeline 948bec2cf55f03bdd79be302e632c788 https://www.encodeproject.org/files/ENCFF193PDR/@@download/ENCFF193PDR.bigBed hg19 released ENCFF677GDF bigWig fold change over control ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF940TNY 1197274395 ENCODE Processing Pipeline bc153f4a1d9d61be1da59160122f652b https://www.encodeproject.org/files/ENCFF677GDF/@@download/ENCFF677GDF.bigWig hg19 released ENCFF748RLD bigBed narrowPeak optimal idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF993GXU 1794121 ENCODE Processing Pipeline 76aded1ca2805abca668cc058e8748e4 https://www.encodeproject.org/files/ENCFF748RLD/@@download/ENCFF748RLD.bigBed hg19 released ENCFF120JHT bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE 6850036 ENCODE Processing Pipeline d4b532087801b4bfd18ba5a256b119ae https://www.encodeproject.org/files/ENCFF120JHT/@@download/ENCFF120JHT.bed.gz hg19 released ENCFF993GXU bed narrowPeak optimal idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF120JHT, ENCFF854ZPL, ENCFF885YBC 940121 ENCODE Processing Pipeline 158d4fa23243d6d4e9f368b4106740cd https://www.encodeproject.org/files/ENCFF993GXU/@@download/ENCFF993GXU.bed.gz hg19 released ENCFF312UAO bigWig signal p-value ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF154KUY, ENCFF473LBU, ENCFF720AUK, ENCFF796JTX 1265709843 ENCODE Processing Pipeline c255701922f370de216353522a85989f https://www.encodeproject.org/files/ENCFF312UAO/@@download/ENCFF312UAO.bigWig GRCh38 released ENCFF609FYE bigWig fold change over control ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF154KUY, ENCFF473LBU, ENCFF720AUK, ENCFF796JTX 1728485546 ENCODE Processing Pipeline 1a534b9f6225511eab8f61b6f35eba7e https://www.encodeproject.org/files/ENCFF609FYE/@@download/ENCFF609FYE.bigWig GRCh38 released ENCFF431BBY bigBed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF542HCK 13693647 ENCODE Processing Pipeline d04074f09a2298d4222eaa676290c13b https://www.encodeproject.org/files/ENCFF431BBY/@@download/ENCFF431BBY.bigBed GRCh38 released ENCFF272ZIM bigBed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF200ACD 13697064 ENCODE Processing Pipeline 68cbea1ce05d4d4fd151c42d4aa932f7 https://www.encodeproject.org/files/ENCFF272ZIM/@@download/ENCFF272ZIM.bigBed GRCh38 released ENCFF019RJJ bigBed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF371RTL 13700492 ENCODE Processing Pipeline 4ce8a3af24f873ff90523fae274d8fc4 https://www.encodeproject.org/files/ENCFF019RJJ/@@download/ENCFF019RJJ.bigBed GRCh38 released ENCFF118ZAT bigWig signal p-value ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF154KUY, ENCFF720AUK, ENCFF796JTX 1099036678 ENCODE Processing Pipeline 5d5c5a33e81af31f6bbe6657506a5786 https://www.encodeproject.org/files/ENCFF118ZAT/@@download/ENCFF118ZAT.bigWig GRCh38 released ENCFF652LEY bigWig fold change over control ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF154KUY, ENCFF720AUK, ENCFF796JTX 1277434016 ENCODE Processing Pipeline 5ba0c1bc7811eceeebe9522d532e96d8 https://www.encodeproject.org/files/ENCFF652LEY/@@download/ENCFF652LEY.bigWig GRCh38 released ENCFF845OPG bed narrowPeak conservative idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF200ACD, ENCFF371RTL, ENCFF419RSJ, ENCFF542HCK 864074 ENCODE Processing Pipeline 90f9bb22c0e01814ac79e39a8c41a6c9 https://www.encodeproject.org/files/ENCFF845OPG/@@download/ENCFF845OPG.bed.gz GRCh38 released ENCFF153IFH bed narrowPeak optimal idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF200ACD, ENCFF371RTL, ENCFF419RSJ, ENCFF542HCK 938708 ENCODE Processing Pipeline cf527a00dd1ee7aca1ec7f1593edaa05 https://www.encodeproject.org/files/ENCFF153IFH/@@download/ENCFF153IFH.bed.gz GRCh38 released ENCFF200ACD bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF473LBU, ENCFF720AUK, ENCFF796JTX 6676159 ENCODE Processing Pipeline 735272f34ecad051b5931581076ee947 https://www.encodeproject.org/files/ENCFF200ACD/@@download/ENCFF200ACD.bed.gz GRCh38 released ENCFF371RTL bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF154KUY, ENCFF473LBU, ENCFF720AUK, ENCFF796JTX 7109854 ENCODE Processing Pipeline 4eb4df3c82ffad4088133f6ef567a909 https://www.encodeproject.org/files/ENCFF371RTL/@@download/ENCFF371RTL.bed.gz GRCh38 released ENCFF747RIV bigWig signal p-value ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF473LBU, ENCFF720AUK, ENCFF796JTX 1102236260 ENCODE Processing Pipeline e5dd206b163b4d0e0214b66110d52450 https://www.encodeproject.org/files/ENCFF747RIV/@@download/ENCFF747RIV.bigWig GRCh38 released ENCFF233WFJ bigWig fold change over control ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF473LBU, ENCFF720AUK, ENCFF796JTX 1206211202 ENCODE Processing Pipeline b90d624ded9d59bb07a609328fb1d604 https://www.encodeproject.org/files/ENCFF233WFJ/@@download/ENCFF233WFJ.bigWig GRCh38 released ENCFF542HCK bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF154KUY, ENCFF720AUK, ENCFF796JTX 6858125 ENCODE Processing Pipeline 0d46a3d81c5b405cd1193b971910b059 https://www.encodeproject.org/files/ENCFF542HCK/@@download/ENCFF542HCK.bed.gz GRCh38 released ENCFF120TGZ bigBed narrowPeak conservative idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF845OPG 1682324 ENCODE Processing Pipeline c4275ee5330255b857abcfcca9a50bde https://www.encodeproject.org/files/ENCFF120TGZ/@@download/ENCFF120TGZ.bigBed GRCh38 released ENCFF603DFR bigBed narrowPeak optimal idr thresholded peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF153IFH 1795847 ENCODE Processing Pipeline bfb868eb608ea417a9d1417ccc529c5a https://www.encodeproject.org/files/ENCFF603DFR/@@download/ENCFF603DFR.bigBed GRCh38 released ENCFF435KUB fastq reads ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF999VOH 2945008307 Michael Snyder, Stanford 3a6cd171e398aac5bac635dfb726b0ed SRA:SRR6213240 https://www.encodeproject.org/files/ENCFF435KUB/@@download/ENCFF435KUB.fastq.gz Illumina HiSeq 4000 /files/ENCFF528TFO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF999VOH fastq reads ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF435KUB 2759843626 Michael Snyder, Stanford 2ef87c65724c30f964780ce556da8f14 SRA:SRR6213240 https://www.encodeproject.org/files/ENCFF999VOH/@@download/ENCFF999VOH.fastq.gz Illumina HiSeq 4000 /files/ENCFF315PYU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF318MWF bam unfiltered alignments ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF435KUB, ENCFF807MUK, ENCFF999VOH 4867176802 ENCODE Processing Pipeline a4d154c1e97f65f48a505edf895fd853 https://www.encodeproject.org/files/ENCFF318MWF/@@download/ENCFF318MWF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF457YWN bam alignments ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF435KUB, ENCFF643CGH, ENCFF999VOH 2669282882 ENCODE Processing Pipeline ed0152e06df36cf7bd507c228ff2b4c5 https://www.encodeproject.org/files/ENCFF457YWN/@@download/ENCFF457YWN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF157JAN bam unfiltered alignments ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF435KUB, ENCFF643CGH, ENCFF999VOH 4864105556 ENCODE Processing Pipeline 7d429cf6e342fbe693a1185858dc0e61 https://www.encodeproject.org/files/ENCFF157JAN/@@download/ENCFF157JAN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF400GIP bam alignments ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF435KUB, ENCFF807MUK, ENCFF999VOH 2666299787 ENCODE Processing Pipeline b2afab611ff09bcf2e0b5c7df0a04985 https://www.encodeproject.org/files/ENCFF400GIP/@@download/ENCFF400GIP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF737PWH bigWig signal p-value ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF320PZV, ENCFF400GIP 854748980 ENCODE Processing Pipeline 5ce8af7736d839df741a0b1d218f1df1 https://www.encodeproject.org/files/ENCFF737PWH/@@download/ENCFF737PWH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF813MTO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF461EJN 395174 ENCODE Processing Pipeline 4d0a5c6a3dbdd69377bee1ca102ff1a8 https://www.encodeproject.org/files/ENCFF813MTO/@@download/ENCFF813MTO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF546CXV bigWig fold change over control ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF320PZV, ENCFF400GIP 909043527 ENCODE Processing Pipeline 4bdafc26ec250553e8084a359fcc31d7 https://www.encodeproject.org/files/ENCFF546CXV/@@download/ENCFF546CXV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF302EOD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF813MTO 849452 ENCODE Processing Pipeline 150fdfdacaf66d3423c3618d4c32301e https://www.encodeproject.org/files/ENCFF302EOD/@@download/ENCFF302EOD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF264UJF bigBed narrowPeak peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF461EJN 13328489 ENCODE Processing Pipeline 7e3954218b8559bbddb324ae39975cbc https://www.encodeproject.org/files/ENCFF264UJF/@@download/ENCFF264UJF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF461EJN bed narrowPeak peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF320PZV, ENCFF400GIP 6448308 ENCODE Processing Pipeline 474935757cdd19b2c99791a29e6cbf2e https://www.encodeproject.org/files/ENCFF461EJN/@@download/ENCFF461EJN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF640ALB bigWig fold change over control ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF457YWN, ENCFF925AMH 914150799 ENCODE Processing Pipeline 438162cce7012341cd519070d06d44d0 https://www.encodeproject.org/files/ENCFF640ALB/@@download/ENCFF640ALB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF795HHP bigWig signal p-value ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF457YWN, ENCFF925AMH 1013510941 ENCODE Processing Pipeline c3f0038a5052feca00836152addb9ef5 https://www.encodeproject.org/files/ENCFF795HHP/@@download/ENCFF795HHP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF322KXO bigBed narrowPeak peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF445NVA 13372914 ENCODE Processing Pipeline 827897356605ed23c638b5808fa2003c https://www.encodeproject.org/files/ENCFF322KXO/@@download/ENCFF322KXO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF520RKD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF156SPI 861567 ENCODE Processing Pipeline 76663f31eb4c765eb4e978d0ada60ee8 https://www.encodeproject.org/files/ENCFF520RKD/@@download/ENCFF520RKD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF445NVA bed narrowPeak peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF457YWN, ENCFF925AMH 6472653 ENCODE Processing Pipeline 4105b3111d3cf74ad8c726b8fb8d8cde https://www.encodeproject.org/files/ENCFF445NVA/@@download/ENCFF445NVA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF156SPI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF419RSJ, ENCFF445NVA 400818 ENCODE Processing Pipeline ea435fbbe7a1be1cfe11c37f6e329a97 https://www.encodeproject.org/files/ENCFF156SPI/@@download/ENCFF156SPI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF324OEM fastq reads ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 2 ENCFF812LUV 1969348231 Michael Snyder, Stanford 42cb319ce6f3de73b696a5d3acbdc1e4 https://www.encodeproject.org/files/ENCFF324OEM/@@download/ENCFF324OEM.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF812LUV fastq reads ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 1 ENCFF324OEM 1959997078 Michael Snyder, Stanford 7162caf7da872b8e9b976a797dd737a1 https://www.encodeproject.org/files/ENCFF812LUV/@@download/ENCFF812LUV.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF765ZNI fastq reads ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF640JQI 2373019691 Michael Snyder, Stanford aec0e1932e230401b35ca913f83121c4 https://www.encodeproject.org/files/ENCFF765ZNI/@@download/ENCFF765ZNI.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF640JQI fastq reads ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF765ZNI 2321704429 Michael Snyder, Stanford 98d86ffaf15b00fc6f42b548818a45e2 https://www.encodeproject.org/files/ENCFF640JQI/@@download/ENCFF640JQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF859ZVB bam unfiltered alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF324OEM, ENCFF807MUK, ENCFF812LUV 4389478835 ENCODE Processing Pipeline 3d2b38a3d923a4458c813dd31782d1b9 https://www.encodeproject.org/files/ENCFF859ZVB/@@download/ENCFF859ZVB.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF026NYG bam unfiltered alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF324OEM, ENCFF643CGH, ENCFF812LUV 4395047316 ENCODE Processing Pipeline 77e6bda522219924ee5f147970b18782 https://www.encodeproject.org/files/ENCFF026NYG/@@download/ENCFF026NYG.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF960MHY bam unfiltered alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF640JQI, ENCFF765ZNI, ENCFF807MUK 5096593987 ENCODE Processing Pipeline 22461715e34faeabb562a4855bb5a6df https://www.encodeproject.org/files/ENCFF960MHY/@@download/ENCFF960MHY.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF025AZR bam unfiltered alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF640JQI, ENCFF643CGH, ENCFF765ZNI 5101918224 ENCODE Processing Pipeline c1b61afac0a144bb28dcb77a152c61f4 https://www.encodeproject.org/files/ENCFF025AZR/@@download/ENCFF025AZR.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF243VKO bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF324OEM, ENCFF807MUK, ENCFF812LUV 3714472856 ENCODE Processing Pipeline 3a0ca5302007a4bf91f53075ec774020 https://www.encodeproject.org/files/ENCFF243VKO/@@download/ENCFF243VKO.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF317PBJ bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF640JQI, ENCFF643CGH, ENCFF765ZNI 4308941769 ENCODE Processing Pipeline 94873754e4d6a7d150d948ef64729668 https://www.encodeproject.org/files/ENCFF317PBJ/@@download/ENCFF317PBJ.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF562COY bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF640JQI, ENCFF765ZNI, ENCFF807MUK 4307263026 ENCODE Processing Pipeline dc48cd119b6e6cb168a0cb2c24c29302 https://www.encodeproject.org/files/ENCFF562COY/@@download/ENCFF562COY.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF852XUO bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF324OEM, ENCFF643CGH, ENCFF812LUV 3717188272 ENCODE Processing Pipeline 5775be8dd782d88b7884faa229dcab0a https://www.encodeproject.org/files/ENCFF852XUO/@@download/ENCFF852XUO.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF388WRK bigWig signal p-value ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV 1239279378 ENCODE Processing Pipeline 3d394768cc046cc80b5ad42d74af2eae https://www.encodeproject.org/files/ENCFF388WRK/@@download/ENCFF388WRK.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF209HKW bed narrowPeak optimal idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF085CGF, ENCFF563QBT, ENCFF772ITA 200581 ENCODE Processing Pipeline 0715e48bb3bd6c77a51ee4cda8cb0a97 https://www.encodeproject.org/files/ENCFF209HKW/@@download/ENCFF209HKW.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF852VBR bigBed narrowPeak optimal idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF209HKW 454964 ENCODE Processing Pipeline 04614f5bd68f4f4e791faa146f2f2059 https://www.encodeproject.org/files/ENCFF852VBR/@@download/ENCFF852VBR.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF524TSA bigWig signal p-value ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF720AUK, ENCFF796JTX, ENCFF852XUO 1238997483 ENCODE Processing Pipeline 319874002684b0acc220fcc67bd3fd50 https://www.encodeproject.org/files/ENCFF524TSA/@@download/ENCFF524TSA.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF048ASH bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF317PBJ, ENCFF720AUK, ENCFF796JTX 6842492 ENCODE Processing Pipeline 985a3edd4aeed2081a91af8539e0aff1 https://www.encodeproject.org/files/ENCFF048ASH/@@download/ENCFF048ASH.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF048ZIT bigWig signal p-value ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF562COY 1197393968 ENCODE Processing Pipeline d1175d14c72d82d76614f777ca6cb227 https://www.encodeproject.org/files/ENCFF048ZIT/@@download/ENCFF048ZIT.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF373XUB bigWig fold change over control ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV, ENCFF562COY 1861387606 ENCODE Processing Pipeline b7715fe19ccd5d4d40b52d6fefa8336f https://www.encodeproject.org/files/ENCFF373XUB/@@download/ENCFF373XUB.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF821SDW bigWig fold change over control ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF720AUK, ENCFF796JTX, ENCFF852XUO 1267830806 ENCODE Processing Pipeline 839d835de5cb1aed20ad3069f41e2fc6 https://www.encodeproject.org/files/ENCFF821SDW/@@download/ENCFF821SDW.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF976UUE bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF317PBJ, ENCFF720AUK, ENCFF796JTX, ENCFF852XUO 7083233 ENCODE Processing Pipeline 21667cd9183e7ebbc818b534bfcb9af1 https://www.encodeproject.org/files/ENCFF976UUE/@@download/ENCFF976UUE.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF228DVH bigBed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF048ASH 13277774 ENCODE Processing Pipeline d82e9c4f188de042596ae46033d3c4cd https://www.encodeproject.org/files/ENCFF228DVH/@@download/ENCFF228DVH.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF698PCI bigWig fold change over control ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF562COY 1405432638 ENCODE Processing Pipeline 81022169854d41a1938c4094a70ba81a https://www.encodeproject.org/files/ENCFF698PCI/@@download/ENCFF698PCI.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF559YJW bigWig signal p-value ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV, ENCFF562COY 1543262154 ENCODE Processing Pipeline bad9e79fe6ae843cca354bf6496e6cb2 https://www.encodeproject.org/files/ENCFF559YJW/@@download/ENCFF559YJW.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF333HNM bigWig fold change over control ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV 1245419358 ENCODE Processing Pipeline 0c2f931b514251286006b15750df655f https://www.encodeproject.org/files/ENCFF333HNM/@@download/ENCFF333HNM.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF772ITA bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV 6227217 ENCODE Processing Pipeline d5e541a6a74160a9dbfcdfbe1098c02e https://www.encodeproject.org/files/ENCFF772ITA/@@download/ENCFF772ITA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF085CGF bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV, ENCFF562COY 7088043 ENCODE Processing Pipeline 9cbc7912f0cebe94ebd9e4e99407290e https://www.encodeproject.org/files/ENCFF085CGF/@@download/ENCFF085CGF.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF224SUU bigBed narrowPeak conservative idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF569QYK 289207 ENCODE Processing Pipeline b52339447872fd823e2bc4f7cf4595ef https://www.encodeproject.org/files/ENCFF224SUU/@@download/ENCFF224SUU.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF506UNA bigWig signal p-value ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF317PBJ, ENCFF720AUK, ENCFF796JTX 1239097785 ENCODE Processing Pipeline 60cad5bb1061b2fbb627891272da6db9 https://www.encodeproject.org/files/ENCFF506UNA/@@download/ENCFF506UNA.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF643VBD bigWig fold change over control ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF317PBJ, ENCFF720AUK, ENCFF796JTX 1407064570 ENCODE Processing Pipeline c10893c616b85854c31ed27d0314ef78 https://www.encodeproject.org/files/ENCFF643VBD/@@download/ENCFF643VBD.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF015KQA bigWig fold change over control ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF317PBJ, ENCFF720AUK, ENCFF796JTX, ENCFF852XUO 1862464253 ENCODE Processing Pipeline df180bf95e46a729c720cc6910bc9f39 https://www.encodeproject.org/files/ENCFF015KQA/@@download/ENCFF015KQA.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF567WID bigBed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF976UUE 13171691 ENCODE Processing Pipeline 15656836cbe1aab32335758f4d0a9873 https://www.encodeproject.org/files/ENCFF567WID/@@download/ENCFF567WID.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF405DBE bigBed narrowPeak conservative idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF453DGG 293610 ENCODE Processing Pipeline 8aaea15cbf56ebbae06c000e4daf1400 https://www.encodeproject.org/files/ENCFF405DBE/@@download/ENCFF405DBE.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF563QBT bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF562COY 6838700 ENCODE Processing Pipeline 47e85c613e641263ed4641a1ac76de4d https://www.encodeproject.org/files/ENCFF563QBT/@@download/ENCFF563QBT.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF493KWJ bigBed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF563QBT 13265618 ENCODE Processing Pipeline bfb425eaf71e59892a02419723d59625 https://www.encodeproject.org/files/ENCFF493KWJ/@@download/ENCFF493KWJ.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF927MKG bigBed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF772ITA 11264885 ENCODE Processing Pipeline a229c9b3eaf5af2018100cd46d040f81 https://www.encodeproject.org/files/ENCFF927MKG/@@download/ENCFF927MKG.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF010ZAF bigWig signal p-value ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF317PBJ, ENCFF720AUK, ENCFF796JTX, ENCFF852XUO 1493279518 ENCODE Processing Pipeline 26cca90ff310408c43fa36b584e38cc3 https://www.encodeproject.org/files/ENCFF010ZAF/@@download/ENCFF010ZAF.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF467MTY bigBed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF343QNN 11284742 ENCODE Processing Pipeline 6e88cbb6ad8403bfbf482968ad3fc35c https://www.encodeproject.org/files/ENCFF467MTY/@@download/ENCFF467MTY.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF919WXN bigBed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF085CGF 13147179 ENCODE Processing Pipeline 197e8a95d1253db2f1855cd92c5bf108 https://www.encodeproject.org/files/ENCFF919WXN/@@download/ENCFF919WXN.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF569QYK bed narrowPeak conservative idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF085CGF, ENCFF563QBT, ENCFF772ITA 135712 ENCODE Processing Pipeline 9c3b63eda9c13243d454eece1f357144 https://www.encodeproject.org/files/ENCFF569QYK/@@download/ENCFF569QYK.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF343QNN bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 ENCFF720AUK, ENCFF796JTX, ENCFF852XUO 6231946 ENCODE Processing Pipeline 82c5f2c8ddf2e45e863132b0221b6e67 https://www.encodeproject.org/files/ENCFF343QNN/@@download/ENCFF343QNN.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF599CBB bed narrowPeak optimal idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF048ASH, ENCFF343QNN, ENCFF419RSJ, ENCFF976UUE 202298 ENCODE Processing Pipeline a5b03d4daf18d199eb04b379a8b4dcdb https://www.encodeproject.org/files/ENCFF599CBB/@@download/ENCFF599CBB.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF453DGG bed narrowPeak conservative idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF048ASH, ENCFF343QNN, ENCFF419RSJ, ENCFF976UUE 137266 ENCODE Processing Pipeline ebc706703eae603eabd827c8f63ac8bc https://www.encodeproject.org/files/ENCFF453DGG/@@download/ENCFF453DGG.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF833AXS bigBed narrowPeak optimal idr thresholded peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF599CBB 460022 ENCODE Processing Pipeline 2552f4c249df96f69695fef997d3bf3e https://www.encodeproject.org/files/ENCFF833AXS/@@download/ENCFF833AXS.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF000RIM bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RIX 1044617300 Richard Myers, HAIB b67cc6bb2f38a3d63b57b29a682d3bd2 https://www.encodeproject.org/files/ENCFF000RIM/@@download/ENCFF000RIM.bam hg19 archived low read length biological replicates with identical biosample ENCFF000RIN bigBed broadPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001URL 751708 Richard Myers, HAIB 4dce85a0b5dee600af461acd55ed9d23 https://www.encodeproject.org/files/ENCFF000RIN/@@download/ENCFF000RIN.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000RIO bigBed broadPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001URM 1212192 Richard Myers, HAIB aab087d56c958c40aa8ed00f231bf647 https://www.encodeproject.org/files/ENCFF000RIO/@@download/ENCFF000RIO.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000RIP bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RIY 1074252141 Richard Myers, HAIB f6ee5e2f488844e24b1911b9d42478e0 https://www.encodeproject.org/files/ENCFF000RIP/@@download/ENCFF000RIP.bam hg19 archived low read length biological replicates with identical biosample ENCFF000RIQ bigWig raw signal ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 1 22346932 Richard Myers, HAIB 88ca3abf6ff84baf6319665d59180b82 https://www.encodeproject.org/files/ENCFF000RIQ/@@download/ENCFF000RIQ.bigWig hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF000RIS bigWig raw signal ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36468681 Richard Myers, HAIB bab3d7b3c1863789cb6bb10d02296728 https://www.encodeproject.org/files/ENCFF000RIS/@@download/ENCFF000RIS.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000RIX fastq reads ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 951456733 Richard Myers, HAIB 8fbdaf8268e4c4ca89ef18689e2e381f https://www.encodeproject.org/files/ENCFF000RIX/@@download/ENCFF000RIX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length biological replicates with identical biosample ENCFF000RIY fastq reads ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 975582332 Richard Myers, HAIB a5bdb58fd1795b4015547de6289ebaab https://www.encodeproject.org/files/ENCFF000RIY/@@download/ENCFF000RIY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length biological replicates with identical biosample ENCFF001URL bed broadPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 1 454088 Richard Myers, HAIB 14da5b8ee61869bff9c8b2770639382a https://www.encodeproject.org/files/ENCFF001URL/@@download/ENCFF001URL.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF001URM bed broadPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 1 850443 Richard Myers, HAIB d9f69e5cbf5cacf5d4697f860385f48e https://www.encodeproject.org/files/ENCFF001URM/@@download/ENCFF001URM.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF002CNY bed narrowPeak optimal idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 712565 ENCODE Consortium Analysis Working Group 7e078e18057c41e9e2ed711465c152ab https://www.encodeproject.org/files/ENCFF002CNY/@@download/ENCFF002CNY.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF825MWK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNY 1412972 ENCODE Consortium d510ed5e8991032f066a2d25553b0828 https://www.encodeproject.org/files/ENCFF825MWK/@@download/ENCFF825MWK.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF478IDH bam unfiltered alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIX, ENCFF643CGH 1266945198 ENCODE Processing Pipeline 5f66c181e311d2a71d2825e48785ba64 https://www.encodeproject.org/files/ENCFF478IDH/@@download/ENCFF478IDH.bam GRCh38 released low read length biological replicates with identical biosample ENCFF458VET bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIY, ENCFF643CGH 831890910 ENCODE Processing Pipeline 0be1aa7120b784c406ba2d107cb9fcf3 https://www.encodeproject.org/files/ENCFF458VET/@@download/ENCFF458VET.bam GRCh38 released low read length biological replicates with identical biosample ENCFF600KCK bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIX, ENCFF643CGH 850094559 ENCODE Processing Pipeline 2af7b828958802631ccc099ba5360c2d https://www.encodeproject.org/files/ENCFF600KCK/@@download/ENCFF600KCK.bam GRCh38 released low read length biological replicates with identical biosample ENCFF676KGX bam unfiltered alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIY, ENCFF643CGH 1294110114 ENCODE Processing Pipeline 4ec3381c63b064e9691ce51318f07974 https://www.encodeproject.org/files/ENCFF676KGX/@@download/ENCFF676KGX.bam GRCh38 released low read length biological replicates with identical biosample ENCFF874VLY bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIX, ENCFF807MUK 850508700 ENCODE Processing Pipeline 47b75eca26ceec6851596e66983c85d3 https://www.encodeproject.org/files/ENCFF874VLY/@@download/ENCFF874VLY.bam hg19 released low read length biological replicates with identical biosample ENCFF838RLT bam unfiltered alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIX, ENCFF807MUK 1260897148 ENCODE Processing Pipeline 7ea4d04193180e91e853b4396e4d82eb https://www.encodeproject.org/files/ENCFF838RLT/@@download/ENCFF838RLT.bam hg19 released low read length biological replicates with identical biosample ENCFF357MBD bam unfiltered alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIY, ENCFF807MUK 1288164982 ENCODE Processing Pipeline 83a945785b1b0962e8a3873f84334fc1 https://www.encodeproject.org/files/ENCFF357MBD/@@download/ENCFF357MBD.bam hg19 released low read length biological replicates with identical biosample ENCFF963XWS bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIY, ENCFF807MUK 832326223 ENCODE Processing Pipeline c4d6cfef39eaacd4e20e595d401cb911 https://www.encodeproject.org/files/ENCFF963XWS/@@download/ENCFF963XWS.bam hg19 released low read length biological replicates with identical biosample ENCFF428FHN bigWig signal p-value ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF503VFG, ENCFF600KCK 475963308 ENCODE Processing Pipeline 8a4f4631f0e9f93fafaf9d8d801951ee https://www.encodeproject.org/files/ENCFF428FHN/@@download/ENCFF428FHN.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF683BAB bigWig signal p-value ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF458VET, ENCFF503VFG 469407649 ENCODE Processing Pipeline 05a09537ebf0b731c19e4f4cf002fdc4 https://www.encodeproject.org/files/ENCFF683BAB/@@download/ENCFF683BAB.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF436ORW bigBed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF704HRH 11227037 ENCODE Processing Pipeline 553673a27b08a40860399eb81557bfeb https://www.encodeproject.org/files/ENCFF436ORW/@@download/ENCFF436ORW.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF633JVE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF574HSR 1567025 ENCODE Processing Pipeline bc432b681927eb4a982d24a596efcdaa https://www.encodeproject.org/files/ENCFF633JVE/@@download/ENCFF633JVE.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF520UBR bigWig signal p-value ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF458VET, ENCFF503VFG, ENCFF600KCK 592049900 ENCODE Processing Pipeline 8be1762ebc15d027cf2a6f59f3ab8f90 https://www.encodeproject.org/files/ENCFF520UBR/@@download/ENCFF520UBR.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF489HTM bigWig fold change over control ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF503VFG, ENCFF600KCK 431347819 ENCODE Processing Pipeline 34da1a2652aba1bcff963613b4ff7a22 https://www.encodeproject.org/files/ENCFF489HTM/@@download/ENCFF489HTM.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF818HAL bed narrowPeak conservative idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF218ZNM, ENCFF419RSJ, ENCFF500NNZ, ENCFF704HRH 657040 ENCODE Processing Pipeline 0c30b032823ac9babafd69a380c3e7f8 https://www.encodeproject.org/files/ENCFF818HAL/@@download/ENCFF818HAL.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF574HSR bed narrowPeak optimal idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF218ZNM, ENCFF419RSJ, ENCFF500NNZ, ENCFF704HRH 782192 ENCODE Processing Pipeline 846361e5886758970f6b959f035e7b44 https://www.encodeproject.org/files/ENCFF574HSR/@@download/ENCFF574HSR.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF179AGA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF818HAL 1108766 ENCODE Processing Pipeline 3eff8de4435ad2c92be25cd5da1a3a69 https://www.encodeproject.org/files/ENCFF179AGA/@@download/ENCFF179AGA.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF218ZNM bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF458VET, ENCFF503VFG, ENCFF600KCK 6337963 ENCODE Processing Pipeline f3ec1db4ea0bb6cc270156c2507c2ffb https://www.encodeproject.org/files/ENCFF218ZNM/@@download/ENCFF218ZNM.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF519FOD bigWig fold change over control ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF458VET, ENCFF503VFG 427108499 ENCODE Processing Pipeline 2292205f2e97efdd54ade460edf4564a https://www.encodeproject.org/files/ENCFF519FOD/@@download/ENCFF519FOD.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF313EMB bigWig fold change over control ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF458VET, ENCFF503VFG, ENCFF600KCK 715340602 ENCODE Processing Pipeline 38f68c430b90af410c3ab12049bd42c8 https://www.encodeproject.org/files/ENCFF313EMB/@@download/ENCFF313EMB.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF704HRH bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF503VFG, ENCFF600KCK 5413146 ENCODE Processing Pipeline 3a7f4e204aef2ccc2f7472d311edcde3 https://www.encodeproject.org/files/ENCFF704HRH/@@download/ENCFF704HRH.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF500NNZ bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF458VET, ENCFF503VFG 5719944 ENCODE Processing Pipeline 93ca10a34daf0c37f592c1bdbe00a080 https://www.encodeproject.org/files/ENCFF500NNZ/@@download/ENCFF500NNZ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF752DFZ bigBed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF500NNZ 11276490 ENCODE Processing Pipeline 8e3a34c561f2d7022c45009842e83c6b https://www.encodeproject.org/files/ENCFF752DFZ/@@download/ENCFF752DFZ.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF303MXT bigBed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF218ZNM 13674167 ENCODE Processing Pipeline 22c56dfde31ac431c169800b952c7003 https://www.encodeproject.org/files/ENCFF303MXT/@@download/ENCFF303MXT.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF568SLD bigWig signal p-value ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF874VLY, ENCFF960JYT 539033476 ENCODE Processing Pipeline e0a088e4d473fe0cac6c7c2e4899c721 https://www.encodeproject.org/files/ENCFF568SLD/@@download/ENCFF568SLD.bigWig hg19 released low read length biological replicates with identical biosample ENCFF034FMY bigWig fold change over control ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF874VLY, ENCFF960JYT 434508420 ENCODE Processing Pipeline 2fd192fbea47dbf6ebe866fdde3645d7 https://www.encodeproject.org/files/ENCFF034FMY/@@download/ENCFF034FMY.bigWig hg19 released low read length biological replicates with identical biosample ENCFF997EFA bigWig signal p-value ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF960JYT, ENCFF963XWS 512474591 ENCODE Processing Pipeline 7b215a1173f82c482f5c0192499d6d18 https://www.encodeproject.org/files/ENCFF997EFA/@@download/ENCFF997EFA.bigWig hg19 released low read length biological replicates with identical biosample ENCFF575FPD bigWig signal p-value ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF874VLY, ENCFF960JYT, ENCFF963XWS 594874355 ENCODE Processing Pipeline 6eaa1f4653824e1621c9f02521d8b167 https://www.encodeproject.org/files/ENCFF575FPD/@@download/ENCFF575FPD.bigWig hg19 released low read length biological replicates with identical biosample ENCFF467NXU bigWig fold change over control ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF960JYT, ENCFF963XWS 427047156 ENCODE Processing Pipeline fc3aa9a877fbb1f540afee5f94fbd00e https://www.encodeproject.org/files/ENCFF467NXU/@@download/ENCFF467NXU.bigWig hg19 released low read length biological replicates with identical biosample ENCFF129RJN bigWig fold change over control ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF874VLY, ENCFF960JYT, ENCFF963XWS 719430707 ENCODE Processing Pipeline 9ad759e10b900909ee30c5dba4262a97 https://www.encodeproject.org/files/ENCFF129RJN/@@download/ENCFF129RJN.bigWig hg19 released low read length biological replicates with identical biosample ENCFF591LXN bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF960JYT, ENCFF963XWS 5623587 ENCODE Processing Pipeline 21ce3cd93a859b9e3293d43edeb3b786 https://www.encodeproject.org/files/ENCFF591LXN/@@download/ENCFF591LXN.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF370FVF bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF874VLY, ENCFF960JYT, ENCFF963XWS 6338785 ENCODE Processing Pipeline fbfa2dd309bc60232b8eb44093632d97 https://www.encodeproject.org/files/ENCFF370FVF/@@download/ENCFF370FVF.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF132WBC bed narrowPeak conservative idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF368ICR, ENCFF370FVF, ENCFF591LXN 657729 ENCODE Processing Pipeline ac635d6009e20b583137b2f68a5d4fce https://www.encodeproject.org/files/ENCFF132WBC/@@download/ENCFF132WBC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF039NPQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132WBC 1109842 ENCODE Processing Pipeline 988b6b2ff06b4c05e043a7be53323169 https://www.encodeproject.org/files/ENCFF039NPQ/@@download/ENCFF039NPQ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF368ICR bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF874VLY, ENCFF960JYT 5309367 ENCODE Processing Pipeline e7d2fb2df81ccb4cb6419371607adb70 https://www.encodeproject.org/files/ENCFF368ICR/@@download/ENCFF368ICR.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF239GRY bigBed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF368ICR 11096064 ENCODE Processing Pipeline 04ce0130298cdc9b5fc1aa8ff4d8678a https://www.encodeproject.org/files/ENCFF239GRY/@@download/ENCFF239GRY.bigBed hg19 released low read length biological replicates with identical biosample ENCFF058XAD bed narrowPeak optimal idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF368ICR, ENCFF370FVF, ENCFF591LXN 775431 ENCODE Processing Pipeline 0698eb75edf612f795a48307b318d11f https://www.encodeproject.org/files/ENCFF058XAD/@@download/ENCFF058XAD.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF387EZX bigBed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF591LXN 11156219 ENCODE Processing Pipeline 89828290ab73df61b712343f47856f6e https://www.encodeproject.org/files/ENCFF387EZX/@@download/ENCFF387EZX.bigBed hg19 released low read length biological replicates with identical biosample ENCFF130WJK bigBed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF370FVF 13672201 ENCODE Processing Pipeline 157e2e469f1bcd9d346b71ae5eab16b7 https://www.encodeproject.org/files/ENCFF130WJK/@@download/ENCFF130WJK.bigBed hg19 released low read length biological replicates with identical biosample ENCFF627NWT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058XAD 1553349 ENCODE Processing Pipeline fe1ef77b489b5223528f594b9c6d07d3 https://www.encodeproject.org/files/ENCFF627NWT/@@download/ENCFF627NWT.bigBed hg19 released low read length biological replicates with identical biosample ENCFF892EKB fastq reads ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2047838978 Richard Myers, HAIB d13648b97003ed1b870bf432c40a7cd7 SRA:SRR5339230 https://www.encodeproject.org/files/ENCFF892EKB/@@download/ENCFF892EKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF336VLV fastq reads ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1864042712 Richard Myers, HAIB 0e631eb2571f22ef6c48972c27ae46e8 SRA:SRR5339229 https://www.encodeproject.org/files/ENCFF336VLV/@@download/ENCFF336VLV.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF015OQD bam unfiltered alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 76 ENCFF336VLV, ENCFF807MUK 2158810065 ENCODE Processing Pipeline 169a8c0ef053310ed20d6c473d230a25 https://www.encodeproject.org/files/ENCFF015OQD/@@download/ENCFF015OQD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF740PUZ bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF892EKB 1842143132 ENCODE Processing Pipeline 3a3d05726102ce212242ca2141fa27a0 https://www.encodeproject.org/files/ENCFF740PUZ/@@download/ENCFF740PUZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684ORD bam unfiltered alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF892EKB 2426753451 ENCODE Processing Pipeline cb26c365ca65deea7604e801ad1547d2 https://www.encodeproject.org/files/ENCFF684ORD/@@download/ENCFF684ORD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF223CHE bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 76 ENCFF336VLV, ENCFF807MUK 1519151208 ENCODE Processing Pipeline 94a1f77e21a0c3df5e1e01b1d62a72f9 https://www.encodeproject.org/files/ENCFF223CHE/@@download/ENCFF223CHE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF699CPF bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 76 ENCFF336VLV, ENCFF643CGH 1519668787 ENCODE Processing Pipeline 1122fa21af682d3d664174f607e844bc https://www.encodeproject.org/files/ENCFF699CPF/@@download/ENCFF699CPF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF175WMD bam unfiltered alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 76 ENCFF336VLV, ENCFF643CGH 2162589060 ENCODE Processing Pipeline 06b5341f2ec8ec52d13a895a5dc50de5 https://www.encodeproject.org/files/ENCFF175WMD/@@download/ENCFF175WMD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF818NIT bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF892EKB 1843366764 ENCODE Processing Pipeline 4fddc6864052f5c99b70aded87c42b6b https://www.encodeproject.org/files/ENCFF818NIT/@@download/ENCFF818NIT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF608KUT bam unfiltered alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF892EKB 2432922183 ENCODE Processing Pipeline a1678f498f02f5be656b758b1a7ae18a https://www.encodeproject.org/files/ENCFF608KUT/@@download/ENCFF608KUT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF194KRZ bigWig signal p-value ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF699CPF 646957001 ENCODE Processing Pipeline ca134ab310dcfad5462c54a5045d5069 https://www.encodeproject.org/files/ENCFF194KRZ/@@download/ENCFF194KRZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF895LJK bigWig signal p-value ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF818NIT 657951334 ENCODE Processing Pipeline e2a0c9a8b0937bf5a388a068d3436106 https://www.encodeproject.org/files/ENCFF895LJK/@@download/ENCFF895LJK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521DTB bigWig signal p-value ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF699CPF, ENCFF818NIT 672729597 ENCODE Processing Pipeline 3f8da55b6c57fcf8811184594a7bc62a https://www.encodeproject.org/files/ENCFF521DTB/@@download/ENCFF521DTB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF043IOF bigWig fold change over control ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF818NIT 628860161 ENCODE Processing Pipeline e86dab963d7d54d57fb372132255a909 https://www.encodeproject.org/files/ENCFF043IOF/@@download/ENCFF043IOF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF413SCF bigWig fold change over control ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF699CPF 487121865 ENCODE Processing Pipeline a2298f7b5a281bc2025ae872eb4b7bc6 https://www.encodeproject.org/files/ENCFF413SCF/@@download/ENCFF413SCF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF139BWF bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF699CPF, ENCFF818NIT 6635798 ENCODE Processing Pipeline 0b110687bfd5e44992b93c06f9f26a5c https://www.encodeproject.org/files/ENCFF139BWF/@@download/ENCFF139BWF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF183ETK bigWig fold change over control ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF699CPF, ENCFF818NIT 928945011 ENCODE Processing Pipeline 7faf3b641d871549be2c1101f7c7a510 https://www.encodeproject.org/files/ENCFF183ETK/@@download/ENCFF183ETK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF051WMI bigBed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF139BWF 13183724 ENCODE Processing Pipeline 13428235129c2e15522df73e58838f18 https://www.encodeproject.org/files/ENCFF051WMI/@@download/ENCFF051WMI.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF553GVE bigBed narrowPeak conservative idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF235PWV 1364480 ENCODE Processing Pipeline 7b3306d462421e28012ceef0d63ed641 https://www.encodeproject.org/files/ENCFF553GVE/@@download/ENCFF553GVE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF149BUU bigBed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF291UHF 13222700 ENCODE Processing Pipeline f6f8310bfea571739f0ae66d9a28509e https://www.encodeproject.org/files/ENCFF149BUU/@@download/ENCFF149BUU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517EJH bed narrowPeak optimal idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF139BWF, ENCFF291UHF, ENCFF419RSJ, ENCFF649ZDR 830044 ENCODE Processing Pipeline 6582d0e6479a5ac7899cfd624f12e3a8 https://www.encodeproject.org/files/ENCFF517EJH/@@download/ENCFF517EJH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF291UHF bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF818NIT 6202149 ENCODE Processing Pipeline 2fcf2c5477e93e4e238e46978ee05dcc https://www.encodeproject.org/files/ENCFF291UHF/@@download/ENCFF291UHF.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF235PWV bed narrowPeak conservative idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF139BWF, ENCFF291UHF, ENCFF419RSJ, ENCFF649ZDR 688037 ENCODE Processing Pipeline 4fbc95a3f8f4784172dd638ce575930b https://www.encodeproject.org/files/ENCFF235PWV/@@download/ENCFF235PWV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649ZDR bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF699CPF 5981263 ENCODE Processing Pipeline 7021119e6f6db89a9b09c5305ff848e8 https://www.encodeproject.org/files/ENCFF649ZDR/@@download/ENCFF649ZDR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF499QAG bigBed narrowPeak optimal idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF517EJH 1573642 ENCODE Processing Pipeline 4a364a28594a97061edffe76deaf29d0 https://www.encodeproject.org/files/ENCFF499QAG/@@download/ENCFF499QAG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF562RCA bigBed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF649ZDR 13070633 ENCODE Processing Pipeline e01e1bb78fd84b846eac4cf863fc3b9c https://www.encodeproject.org/files/ENCFF562RCA/@@download/ENCFF562RCA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF909JXM bigWig signal p-value ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF740PUZ 1309158181 ENCODE Processing Pipeline f5c03b54d05f684bb170047965f8f281 https://www.encodeproject.org/files/ENCFF909JXM/@@download/ENCFF909JXM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF421OKB bigWig signal p-value ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF223CHE 1158198140 ENCODE Processing Pipeline 6a32ed56a5c5d9c5ca5762ffb7bac52a https://www.encodeproject.org/files/ENCFF421OKB/@@download/ENCFF421OKB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670FOZ bigWig signal p-value ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF223CHE, ENCFF740PUZ 1371757997 ENCODE Processing Pipeline 4d7a69df5deb249702eaa1c6c2bfba02 https://www.encodeproject.org/files/ENCFF670FOZ/@@download/ENCFF670FOZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF659ZRV bigWig fold change over control ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF740PUZ 1159438633 ENCODE Processing Pipeline 080295de83719f2ef3d5be49328bcdf4 https://www.encodeproject.org/files/ENCFF659ZRV/@@download/ENCFF659ZRV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF665MPX bigWig fold change over control ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF223CHE 895392822 ENCODE Processing Pipeline 5f258cec669b9a89b8febe19602af3f2 https://www.encodeproject.org/files/ENCFF665MPX/@@download/ENCFF665MPX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF157FBN bigWig fold change over control ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF223CHE, ENCFF740PUZ 1494838092 ENCODE Processing Pipeline 0e64f0a1f245f7232779c98f79a6d533 https://www.encodeproject.org/files/ENCFF157FBN/@@download/ENCFF157FBN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF614RLB bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF740PUZ 6618173 ENCODE Processing Pipeline 2c3c0ebf72779da50c6af58f47dee890 https://www.encodeproject.org/files/ENCFF614RLB/@@download/ENCFF614RLB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521SLC bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF223CHE 6469898 ENCODE Processing Pipeline 1d1d352dddf503d50316e7ee49e9ee95 https://www.encodeproject.org/files/ENCFF521SLC/@@download/ENCFF521SLC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF424PAM bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF223CHE, ENCFF740PUZ 6901572 ENCODE Processing Pipeline a30f96d1638dfb4a6883aef23b32b60c https://www.encodeproject.org/files/ENCFF424PAM/@@download/ENCFF424PAM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF771KDO bigBed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF614RLB 13204039 ENCODE Processing Pipeline 6664da9ea0894c419435a2392f54c963 https://www.encodeproject.org/files/ENCFF771KDO/@@download/ENCFF771KDO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF748NDQ bigBed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF521SLC 13094651 ENCODE Processing Pipeline 42147cd661d828376cf211abb1f31a9e https://www.encodeproject.org/files/ENCFF748NDQ/@@download/ENCFF748NDQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF627LBM bigBed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF424PAM 13222956 ENCODE Processing Pipeline b0e83dea0323d7a1839f0eddd075b914 https://www.encodeproject.org/files/ENCFF627LBM/@@download/ENCFF627LBM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF500LWT bigBed narrowPeak conservative idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF262NES 1430836 ENCODE Processing Pipeline 6635304b728a2aad02f72bb4512db5a1 https://www.encodeproject.org/files/ENCFF500LWT/@@download/ENCFF500LWT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262NES bed narrowPeak conservative idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF424PAM, ENCFF521SLC, ENCFF614RLB 701764 ENCODE Processing Pipeline 02693246bad910d2b4a56b816812fd54 https://www.encodeproject.org/files/ENCFF262NES/@@download/ENCFF262NES.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF896NJN bigBed narrowPeak optimal idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF391UDD 1599792 ENCODE Processing Pipeline 6a62a27de478994baa82895c69f4997e https://www.encodeproject.org/files/ENCFF896NJN/@@download/ENCFF896NJN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF391UDD bed narrowPeak optimal idr thresholded peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF424PAM, ENCFF521SLC, ENCFF614RLB 816365 ENCODE Processing Pipeline b74563c89c8616c01d6853624ca6f8a2 https://www.encodeproject.org/files/ENCFF391UDD/@@download/ENCFF391UDD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF800IPM fastq reads ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 1 ENCFF621DYS 1831872049 Michael Snyder, Stanford bc669005a27ef2d5e7a25f2879176266 SRA:SRR6213261 https://www.encodeproject.org/files/ENCFF800IPM/@@download/ENCFF800IPM.fastq.gz Illumina HiSeq 4000 /files/ENCFF011TZG/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF621DYS fastq reads ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 1 100 paired-ended 2 ENCFF800IPM 2063790392 Michael Snyder, Stanford 050e29c2ed6fdc10e7377949c9756d64 SRA:SRR6213261 https://www.encodeproject.org/files/ENCFF621DYS/@@download/ENCFF621DYS.fastq.gz Illumina HiSeq 4000 /files/ENCFF539NMO/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF416LHH bam unfiltered alignments ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 100 ENCFF621DYS, ENCFF643CGH, ENCFF800IPM 3578770048 ENCODE Processing Pipeline 5f42b20b0a8953021289838e271d076b https://www.encodeproject.org/files/ENCFF416LHH/@@download/ENCFF416LHH.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF552JYI bam unfiltered alignments ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 100 ENCFF621DYS, ENCFF800IPM, ENCFF807MUK 3577270662 ENCODE Processing Pipeline e0df6b3acd52dde1fa4b79d6af1dd634 https://www.encodeproject.org/files/ENCFF552JYI/@@download/ENCFF552JYI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF080IVM bam alignments ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 100 ENCFF621DYS, ENCFF643CGH, ENCFF800IPM 2365143363 ENCODE Processing Pipeline a22418c7cd2eb17890cb566c654cc1b1 https://www.encodeproject.org/files/ENCFF080IVM/@@download/ENCFF080IVM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF438KPT bam alignments ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 100 ENCFF621DYS, ENCFF800IPM, ENCFF807MUK 2363307337 ENCODE Processing Pipeline c354ec07f88cfcc3f26d44bc3f5f2a73 https://www.encodeproject.org/files/ENCFF438KPT/@@download/ENCFF438KPT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF737PUO bigBed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF109JXK 11450730 ENCODE Processing Pipeline 0077fab76ea1af6927ddd97c326fcb54 https://www.encodeproject.org/files/ENCFF737PUO/@@download/ENCFF737PUO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF058KWC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF202BAI 845369 ENCODE Processing Pipeline bed12db4b6a8cfaea92cf4a69265def7 https://www.encodeproject.org/files/ENCFF058KWC/@@download/ENCFF058KWC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF308BQF bigWig fold change over control ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF438KPT, ENCFF580MDV 989993817 ENCODE Processing Pipeline 6fad2a9c6647df001a11bc4a1a1de889 https://www.encodeproject.org/files/ENCFF308BQF/@@download/ENCFF308BQF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF704EZB bigWig signal p-value ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF438KPT, ENCFF580MDV 971460362 ENCODE Processing Pipeline 5ec24acecaf86c5bedfc49b36fd6a1fb https://www.encodeproject.org/files/ENCFF704EZB/@@download/ENCFF704EZB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF109JXK bed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF438KPT, ENCFF580MDV 6016392 ENCODE Processing Pipeline d25413af83de49a52cf86d95f876626e https://www.encodeproject.org/files/ENCFF109JXK/@@download/ENCFF109JXK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF202BAI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF001TDO, ENCFF109JXK 444399 ENCODE Processing Pipeline 5eda8c78db75e4b508791a1eabaee5b1 https://www.encodeproject.org/files/ENCFF202BAI/@@download/ENCFF202BAI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF094JEP bigWig signal p-value ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF015PXS, ENCFF080IVM 1093280235 ENCODE Processing Pipeline e499660ac1a897f7d48d76f73dde31ca https://www.encodeproject.org/files/ENCFF094JEP/@@download/ENCFF094JEP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF489VAN bed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF015PXS, ENCFF080IVM 6116817 ENCODE Processing Pipeline 0041a14aecf8d01d3a8b8cebe2d07181 https://www.encodeproject.org/files/ENCFF489VAN/@@download/ENCFF489VAN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF483CNK bigBed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF489VAN 11580368 ENCODE Processing Pipeline b5883f0817c791e2b86f562577485c30 https://www.encodeproject.org/files/ENCFF483CNK/@@download/ENCFF483CNK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF210DBT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF373DVN 901670 ENCODE Processing Pipeline 0a707fc6cb9aa6c84ccc1b923ab37500 https://www.encodeproject.org/files/ENCFF210DBT/@@download/ENCFF210DBT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF786YLI bigWig fold change over control ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF015PXS, ENCFF080IVM 997573217 ENCODE Processing Pipeline 20873382bac71d2467c939b604bddcaa https://www.encodeproject.org/files/ENCFF786YLI/@@download/ENCFF786YLI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF373DVN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF419RSJ, ENCFF489VAN 481041 ENCODE Processing Pipeline ec7515df6646bb15fcf5c764e22038c6 https://www.encodeproject.org/files/ENCFF373DVN/@@download/ENCFF373DVN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF713HTL fastq reads ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF570FCV 3554948665 Michael Snyder, Stanford 36f345604f151f00c36d1f7a4cc5d86e SRA:SRR6212642 https://www.encodeproject.org/files/ENCFF713HTL/@@download/ENCFF713HTL.fastq.gz Illumina HiSeq 4000 /files/ENCFF247YLS/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF570FCV fastq reads ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF713HTL 2905326798 Michael Snyder, Stanford 8b95c285879b44beb51961f97c2c7f57 SRA:SRR6212642 https://www.encodeproject.org/files/ENCFF570FCV/@@download/ENCFF570FCV.fastq.gz Illumina HiSeq 4000 /files/ENCFF823GXV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF614QDZ bam unfiltered alignments ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF570FCV, ENCFF643CGH, ENCFF713HTL 5765338265 ENCODE Processing Pipeline 57d7a9dd5a08c945410c99d33fec60ee https://www.encodeproject.org/files/ENCFF614QDZ/@@download/ENCFF614QDZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF013XSL bam alignments ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF570FCV, ENCFF643CGH, ENCFF713HTL 3306782501 ENCODE Processing Pipeline fa67ebbc18ee786d092c3242144d82fc https://www.encodeproject.org/files/ENCFF013XSL/@@download/ENCFF013XSL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147MIR bam unfiltered alignments ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF570FCV, ENCFF713HTL, ENCFF807MUK 5763121897 ENCODE Processing Pipeline e9d48b9cd9db935f43771d9a660afb70 https://www.encodeproject.org/files/ENCFF147MIR/@@download/ENCFF147MIR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF904EON bam alignments ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF570FCV, ENCFF713HTL, ENCFF807MUK 3303522906 ENCODE Processing Pipeline af29bff1fb8f6a9a9877be8ac79bba6d https://www.encodeproject.org/files/ENCFF904EON/@@download/ENCFF904EON.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF041MGQ bigWig signal p-value ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF482GCR, ENCFF904EON 1259447725 ENCODE Processing Pipeline 71f5af004a7036e8eda8955b9f4d2d84 https://www.encodeproject.org/files/ENCFF041MGQ/@@download/ENCFF041MGQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF172EHB bigWig fold change over control ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF482GCR, ENCFF904EON 1216708167 ENCODE Processing Pipeline 1cc4259eb12aa81014a7840f895eed59 https://www.encodeproject.org/files/ENCFF172EHB/@@download/ENCFF172EHB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF956RBB bigBed narrowPeak peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF179EGK 13479758 ENCODE Processing Pipeline e2a274219ff4bd7e2e571034bd4e1e8a https://www.encodeproject.org/files/ENCFF956RBB/@@download/ENCFF956RBB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF195XCT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF358ZLQ 1088650 ENCODE Processing Pipeline 7875ae2085e94f5459bb71e4d39aac8a https://www.encodeproject.org/files/ENCFF195XCT/@@download/ENCFF195XCT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF179EGK bed narrowPeak peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF482GCR, ENCFF904EON 6609796 ENCODE Processing Pipeline f31e73e68b95515a24075b3d76f056ab https://www.encodeproject.org/files/ENCFF179EGK/@@download/ENCFF179EGK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF358ZLQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF179EGK 442950 ENCODE Processing Pipeline 6c8a567bf34047c963ef38b46953e2f2 https://www.encodeproject.org/files/ENCFF358ZLQ/@@download/ENCFF358ZLQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF888KXC bigWig signal p-value ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF013XSL, ENCFF298QEY 1038049382 ENCODE Processing Pipeline 51ae4bd2c1bd574b10933bdd9f16c306 https://www.encodeproject.org/files/ENCFF888KXC/@@download/ENCFF888KXC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF898ZTX bigWig fold change over control ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF013XSL, ENCFF298QEY 1219909037 ENCODE Processing Pipeline 62a9a28feeb9bf1719a16bdd9dd9ce01 https://www.encodeproject.org/files/ENCFF898ZTX/@@download/ENCFF898ZTX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF161FDV bed narrowPeak peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF013XSL, ENCFF298QEY 6639839 ENCODE Processing Pipeline a4bfb695f33e3aa854f118e85ecf6c7e https://www.encodeproject.org/files/ENCFF161FDV/@@download/ENCFF161FDV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF227YCI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF161FDV, ENCFF419RSJ 454664 ENCODE Processing Pipeline 77d2a22400010b7e450df9feab0b384f https://www.encodeproject.org/files/ENCFF227YCI/@@download/ENCFF227YCI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF796MON bigBed narrowPeak peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF161FDV 13529791 ENCODE Processing Pipeline 784c77921923d57056b2365016dbaf46 https://www.encodeproject.org/files/ENCFF796MON/@@download/ENCFF796MON.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF558CSY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF227YCI 1108750 ENCODE Processing Pipeline 57e3bfc11a70c47ce8bd9d0f35037494 https://www.encodeproject.org/files/ENCFF558CSY/@@download/ENCFF558CSY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF759FBS fastq reads ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF356QEU 3353362465 Michael Snyder, Stanford fcb277865ae1bc673f2f31de0442bbdd SRA:SRR6212838 https://www.encodeproject.org/files/ENCFF759FBS/@@download/ENCFF759FBS.fastq.gz Illumina HiSeq 4000 /files/ENCFF518CYQ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF356QEU fastq reads ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF759FBS 3099424606 Michael Snyder, Stanford 4dba77ad82b1e0a5de3a3a3bddd27fc2 SRA:SRR6212838 https://www.encodeproject.org/files/ENCFF356QEU/@@download/ENCFF356QEU.fastq.gz Illumina HiSeq 4000 /files/ENCFF814ZUT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF825NIT bam unfiltered alignments ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF356QEU, ENCFF643CGH, ENCFF759FBS 5999066810 ENCODE Processing Pipeline 22ef1b823fb235966d63dfebba04fadf https://www.encodeproject.org/files/ENCFF825NIT/@@download/ENCFF825NIT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF350OUK bam unfiltered alignments ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF356QEU, ENCFF759FBS, ENCFF807MUK 5997452142 ENCODE Processing Pipeline f53ff142b272d080b9abc9bdbb674db0 https://www.encodeproject.org/files/ENCFF350OUK/@@download/ENCFF350OUK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF572HPL bam alignments ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF356QEU, ENCFF643CGH, ENCFF759FBS 4011503797 ENCODE Processing Pipeline 7bdfced801c993e7d91f1938be6ff394 https://www.encodeproject.org/files/ENCFF572HPL/@@download/ENCFF572HPL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF992GXV bam alignments ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF356QEU, ENCFF759FBS, ENCFF807MUK 4006655353 ENCODE Processing Pipeline 8e847e80e7238f5cbcda401ed601f303 https://www.encodeproject.org/files/ENCFF992GXV/@@download/ENCFF992GXV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF606CVJ bigWig fold change over control ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF033YSR, ENCFF992GXV 1273447362 ENCODE Processing Pipeline 22931645301bc848c43fd7640cfc8f09 https://www.encodeproject.org/files/ENCFF606CVJ/@@download/ENCFF606CVJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF770KUN bigWig signal p-value ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF033YSR, ENCFF992GXV 1325112838 ENCODE Processing Pipeline e0354c19866a613393d6fc875390d4ca https://www.encodeproject.org/files/ENCFF770KUN/@@download/ENCFF770KUN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF715AKU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF229EII 444908 ENCODE Processing Pipeline a5e0ca17ae51923e689b4d692e5181e1 https://www.encodeproject.org/files/ENCFF715AKU/@@download/ENCFF715AKU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF965OMG bigBed narrowPeak peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF229EII 13444623 ENCODE Processing Pipeline 32b12102e953bfa4d3ffd4ba7c433ac5 https://www.encodeproject.org/files/ENCFF965OMG/@@download/ENCFF965OMG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF915MON bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF715AKU 925705 ENCODE Processing Pipeline 7bd896c9a682ce770694ed2d1f98563e https://www.encodeproject.org/files/ENCFF915MON/@@download/ENCFF915MON.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF229EII bed narrowPeak peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF033YSR, ENCFF992GXV 6714073 ENCODE Processing Pipeline 6f4784ea67835223eb8f148d127eac29 https://www.encodeproject.org/files/ENCFF229EII/@@download/ENCFF229EII.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF488TJB bigWig signal p-value ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF572HPL, ENCFF983NYA 1398828018 ENCODE Processing Pipeline 3602e2dd7f624ca89fe4d29631b04d4b https://www.encodeproject.org/files/ENCFF488TJB/@@download/ENCFF488TJB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF233SKC bigWig fold change over control ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF572HPL, ENCFF983NYA 1274888500 ENCODE Processing Pipeline 9828745e556138c9e83b8cbc7e0bed65 https://www.encodeproject.org/files/ENCFF233SKC/@@download/ENCFF233SKC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF930NQQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF214IHP, ENCFF419RSJ 452369 ENCODE Processing Pipeline 1411f45d1d10bf5f19f7d4a1e7e7f9e2 https://www.encodeproject.org/files/ENCFF930NQQ/@@download/ENCFF930NQQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF185AZK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF930NQQ 937448 ENCODE Processing Pipeline 64700a947d5c5e15fa65d954ed5a8379 https://www.encodeproject.org/files/ENCFF185AZK/@@download/ENCFF185AZK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF214IHP bed narrowPeak peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF572HPL, ENCFF983NYA 6723619 ENCODE Processing Pipeline f5d361bf5628912de132b6a49b29ca35 https://www.encodeproject.org/files/ENCFF214IHP/@@download/ENCFF214IHP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF811GPF bigBed narrowPeak peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF214IHP 13468054 ENCODE Processing Pipeline 98818fa2f6b9d500c1a0732643e56adf https://www.encodeproject.org/files/ENCFF811GPF/@@download/ENCFF811GPF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF869NYZ fastq reads ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF278XHE 3532116644 Michael Snyder, Stanford 3cdcb7790f834f45c2d1b2f79ab56ef3 SRA:SRR6212690 https://www.encodeproject.org/files/ENCFF869NYZ/@@download/ENCFF869NYZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF538WSF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF278XHE fastq reads ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF869NYZ 2979226356 Michael Snyder, Stanford 2ff3376eabe11d88f958ffcfe87d671a SRA:SRR6212690 https://www.encodeproject.org/files/ENCFF278XHE/@@download/ENCFF278XHE.fastq.gz Illumina HiSeq 4000 /files/ENCFF201DYW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF543FYB bam unfiltered alignments ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF278XHE, ENCFF807MUK, ENCFF869NYZ 5779054869 ENCODE Processing Pipeline eff00849a9e1d304a93b0cf0e8c4e1f3 https://www.encodeproject.org/files/ENCFF543FYB/@@download/ENCFF543FYB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767PMD bam unfiltered alignments ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF278XHE, ENCFF643CGH, ENCFF869NYZ 5777598372 ENCODE Processing Pipeline 5e9b9a5c56baa6e6e5f9d7f7ad9c4b72 https://www.encodeproject.org/files/ENCFF767PMD/@@download/ENCFF767PMD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF424FQK bam alignments ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF278XHE, ENCFF807MUK, ENCFF869NYZ 3499038051 ENCODE Processing Pipeline 8cf7f0d150f546c7e1b7601259422913 https://www.encodeproject.org/files/ENCFF424FQK/@@download/ENCFF424FQK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF052VVR bam alignments ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF278XHE, ENCFF643CGH, ENCFF869NYZ 3504883603 ENCODE Processing Pipeline 4e372a39a43b7b994fe84b46a559b735 https://www.encodeproject.org/files/ENCFF052VVR/@@download/ENCFF052VVR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF389DLX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF547NJW 253700 ENCODE Processing Pipeline 8fd5a24935c255447801a0890221968e https://www.encodeproject.org/files/ENCFF389DLX/@@download/ENCFF389DLX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF377DMZ bigWig signal p-value ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF424FQK, ENCFF869RCG 1141586124 ENCODE Processing Pipeline 2405f2e05f66b879f71b19732d053373 https://www.encodeproject.org/files/ENCFF377DMZ/@@download/ENCFF377DMZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF090VBQ bigWig fold change over control ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF424FQK, ENCFF869RCG 1243179208 ENCODE Processing Pipeline e3fb45efdd2d761542d7513c784e9b3b https://www.encodeproject.org/files/ENCFF090VBQ/@@download/ENCFF090VBQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF547NJW bed narrowPeak peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF424FQK, ENCFF869RCG 6000462 ENCODE Processing Pipeline d9e34bba0b7e9d355c80d86777748513 https://www.encodeproject.org/files/ENCFF547NJW/@@download/ENCFF547NJW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF952JKJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF389DLX 508392 ENCODE Processing Pipeline 844b291c5de8b3f5ab71ca2fdb41ea5e https://www.encodeproject.org/files/ENCFF952JKJ/@@download/ENCFF952JKJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF913QUX bigBed narrowPeak peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF547NJW 11550469 ENCODE Processing Pipeline 2a20f7ed1b5aa4da614b42ebcf7fe8c2 https://www.encodeproject.org/files/ENCFF913QUX/@@download/ENCFF913QUX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF143QPM bigWig signal p-value ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF052VVR, ENCFF293TMJ 1311630457 ENCODE Processing Pipeline f48f6dbc9d2aa7df53a2c0e5b29496a4 https://www.encodeproject.org/files/ENCFF143QPM/@@download/ENCFF143QPM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF005KLV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF160SYU 513576 ENCODE Processing Pipeline 6a599e06b750dd7846873b6cfb9583b2 https://www.encodeproject.org/files/ENCFF005KLV/@@download/ENCFF005KLV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF278UPX bigWig fold change over control ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF052VVR, ENCFF293TMJ 1236393564 ENCODE Processing Pipeline 61686543641a0d966054c702733ec2f3 https://www.encodeproject.org/files/ENCFF278UPX/@@download/ENCFF278UPX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF536MOF bed narrowPeak peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF052VVR, ENCFF293TMJ 5991055 ENCODE Processing Pipeline 8bbff7b8005f45898a8b541df9b5fb93 https://www.encodeproject.org/files/ENCFF536MOF/@@download/ENCFF536MOF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF988XAE bigBed narrowPeak peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF536MOF 11561362 ENCODE Processing Pipeline 994ca17aa19c3483be2ace576e30541a https://www.encodeproject.org/files/ENCFF988XAE/@@download/ENCFF988XAE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF160SYU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF419RSJ, ENCFF536MOF 255405 ENCODE Processing Pipeline fe5733276c4c1b3999885720184fe8b0 https://www.encodeproject.org/files/ENCFF160SYU/@@download/ENCFF160SYU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000BZP bigBed broadPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SZR 3728480 Bradley Bernstein, Broad 212efe0f39ee5a1304c7397ff70770c3 https://www.encodeproject.org/files/ENCFF000BZP/@@download/ENCFF000BZP.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF000BZO bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 1 663133441 Bradley Bernstein, Broad 3bd1449434919c96ab51706092ae9fad https://www.encodeproject.org/files/ENCFF000BZO/@@download/ENCFF000BZO.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from insufficient read depth ENCFF000BZQ bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 1 1285571523 Bradley Bernstein, Broad e28fa6a80b3d27e2e5695efd43667de3 https://www.encodeproject.org/files/ENCFF000BZQ/@@download/ENCFF000BZQ.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from insufficient read depth ENCFF000BZR bigWig signal ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 465312975 Bradley Bernstein, Broad f708d0aa96e82568fcd2257dcb8f806b https://www.encodeproject.org/files/ENCFF000BZR/@@download/ENCFF000BZR.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from insufficient read depth ENCFF001SZR bed broadPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2002488 Bradley Bernstein, Broad 983c9a47c9565d33539929dc62d94739 https://www.encodeproject.org/files/ENCFF001SZR/@@download/ENCFF001SZR.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from insufficient read depth ENCFF002CEP bed narrowPeak optimal idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 28146 ENCODE Consortium Analysis Working Group 13bd20b1e3ab003e3db4cdced8b95873 https://www.encodeproject.org/files/ENCFF002CEP/@@download/ENCFF002CEP.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from insufficient read depth ENCFF917YDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE ENCFF002CEP 132945 ENCODE Consortium 60d6a86e33092bf93094b7220e17203d https://www.encodeproject.org/files/ENCFF917YDR/@@download/ENCFF917YDR.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF115AGC fastq reads ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1310255918 Bradley Bernstein, Broad 6c4154869fb3b724c8d2527b107d3e05 https://www.encodeproject.org/files/ENCFF115AGC/@@download/ENCFF115AGC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF991ROT fastq reads ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 1272645011 Bradley Bernstein, Broad 6e66d1bc61e82138fccfb1a989406efe https://www.encodeproject.org/files/ENCFF991ROT/@@download/ENCFF991ROT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF227CAY bam unfiltered alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF991ROT 1515780063 ENCODE Processing Pipeline 38671fb53b0b507f3717b3a7986cdf8c https://www.encodeproject.org/files/ENCFF227CAY/@@download/ENCFF227CAY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF422HPM bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF115AGC, ENCFF807MUK 796949069 ENCODE Processing Pipeline 14c776b194dc9faa1c6bf0c64451c4f7 https://www.encodeproject.org/files/ENCFF422HPM/@@download/ENCFF422HPM.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF566ZFX bam unfiltered alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF115AGC, ENCFF643CGH 1697170308 ENCODE Processing Pipeline d71ca181430f4c9e872ce79a15eacb18 https://www.encodeproject.org/files/ENCFF566ZFX/@@download/ENCFF566ZFX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF265FQY bam unfiltered alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF991ROT 1510832336 ENCODE Processing Pipeline f887fb5ee65ee9bc4a0542265fb84d4c https://www.encodeproject.org/files/ENCFF265FQY/@@download/ENCFF265FQY.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF392VDD bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF991ROT 400863879 ENCODE Processing Pipeline fdaaedca0176909b0ecefd03c3873946 https://www.encodeproject.org/files/ENCFF392VDD/@@download/ENCFF392VDD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF347XSM bam unfiltered alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF115AGC, ENCFF807MUK 1688474968 ENCODE Processing Pipeline 24b7b0448f14a3812c46239e5be14918 https://www.encodeproject.org/files/ENCFF347XSM/@@download/ENCFF347XSM.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF213CZL bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF991ROT 400550110 ENCODE Processing Pipeline 18869a0c9319b42dadf5a05e4286e24b https://www.encodeproject.org/files/ENCFF213CZL/@@download/ENCFF213CZL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF428XVO bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF115AGC, ENCFF643CGH 796346833 ENCODE Processing Pipeline 8673bf24241aed24a21ccd2ad55d9365 https://www.encodeproject.org/files/ENCFF428XVO/@@download/ENCFF428XVO.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF785SDP bigWig signal p-value ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF245PJA, ENCFF422HPM, ENCFF574XYY 488423571 ENCODE Processing Pipeline 5b95b4abc2079c370be42a43ec9543a7 https://www.encodeproject.org/files/ENCFF785SDP/@@download/ENCFF785SDP.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF003RDX bigWig signal p-value ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF392VDD 284219524 ENCODE Processing Pipeline bdb3e97c8d51638fdb6346a07b0b7d2a https://www.encodeproject.org/files/ENCFF003RDX/@@download/ENCFF003RDX.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF257IFT bigBed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF996VOF 7878730 ENCODE Processing Pipeline 57da688717ea35e593dfcd2df8a7cc34 https://www.encodeproject.org/files/ENCFF257IFT/@@download/ENCFF257IFT.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF244TBN bigWig signal p-value ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF428XVO, ENCFF829HZY 457992344 ENCODE Processing Pipeline 7004b6f0610995e2a53fe2f17326e4d2 https://www.encodeproject.org/files/ENCFF244TBN/@@download/ENCFF244TBN.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF057OAB bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF428XVO, ENCFF829HZY 4204873 ENCODE Processing Pipeline 328d3274d279df5305dcd31d96932272 https://www.encodeproject.org/files/ENCFF057OAB/@@download/ENCFF057OAB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF187WZF bigWig fold change over control ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF245PJA, ENCFF422HPM, ENCFF574XYY 410257855 ENCODE Processing Pipeline 8cafa7b122cc91bf9e089a646f11688a https://www.encodeproject.org/files/ENCFF187WZF/@@download/ENCFF187WZF.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF196IUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF998HOR 120412 ENCODE Processing Pipeline 9716e8e2d13706cfd82d2ff34cf4b48c https://www.encodeproject.org/files/ENCFF196IUZ/@@download/ENCFF196IUZ.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF263JIW bigWig fold change over control ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF428XVO, ENCFF829HZY 409558378 ENCODE Processing Pipeline d05ac37ebaf2ce4f0417fe7948395608 https://www.encodeproject.org/files/ENCFF263JIW/@@download/ENCFF263JIW.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF960CSX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF669QKC 75910 ENCODE Processing Pipeline e1cd9dbf5352cea5adf33d4dd2f75def https://www.encodeproject.org/files/ENCFF960CSX/@@download/ENCFF960CSX.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF177KCK bigWig fold change over control ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF245PJA, ENCFF392VDD, ENCFF422HPM, ENCFF574XYY 559288318 ENCODE Processing Pipeline 2860eb13d8c328268cb538cf2c1e63da https://www.encodeproject.org/files/ENCFF177KCK/@@download/ENCFF177KCK.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF322OPC bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF245PJA, ENCFF422HPM, ENCFF574XYY 4336218 ENCODE Processing Pipeline 3580d942b4d0b3d698399cc018084638 https://www.encodeproject.org/files/ENCFF322OPC/@@download/ENCFF322OPC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF480PEW bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF213CZL, ENCFF392XRJ, ENCFF428XVO, ENCFF829HZY 4977114 ENCODE Processing Pipeline 468e6e58a1c6c4a673f101c50770ff1f https://www.encodeproject.org/files/ENCFF480PEW/@@download/ENCFF480PEW.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF997PQU bigWig fold change over control ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF392VDD 180147942 ENCODE Processing Pipeline f525051960fe5ce3b29d7ecf01c961be https://www.encodeproject.org/files/ENCFF997PQU/@@download/ENCFF997PQU.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF996VOF bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF392VDD 3689177 ENCODE Processing Pipeline c9dd6ff51d059e1f979716b9efb805d9 https://www.encodeproject.org/files/ENCFF996VOF/@@download/ENCFF996VOF.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF676RZD bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF245PJA, ENCFF392VDD, ENCFF422HPM, ENCFF574XYY 5073702 ENCODE Processing Pipeline 2d696324ca493f3e066ce7f4a9dc1cce https://www.encodeproject.org/files/ENCFF676RZD/@@download/ENCFF676RZD.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF391PFT bigBed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF322OPC 10887036 ENCODE Processing Pipeline 8953e1185e3dcf00a843d87cb708b1f5 https://www.encodeproject.org/files/ENCFF391PFT/@@download/ENCFF391PFT.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF160BJC bigBed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF676RZD 11225650 ENCODE Processing Pipeline c532613ed081560f3b8e173ee0a1b5aa https://www.encodeproject.org/files/ENCFF160BJC/@@download/ENCFF160BJC.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF025HHM bed narrowPeak conservative idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF322OPC, ENCFF676RZD, ENCFF996VOF 18045 ENCODE Processing Pipeline aa6d067088248069a5b0d3aad3cc622f https://www.encodeproject.org/files/ENCFF025HHM/@@download/ENCFF025HHM.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF955AXH bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF025HHM 92597 ENCODE Processing Pipeline 30bf2ae9786e71d4da92cb56ea71bfd8 https://www.encodeproject.org/files/ENCFF955AXH/@@download/ENCFF955AXH.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF998HOR bed narrowPeak optimal idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF322OPC, ENCFF676RZD, ENCFF996VOF 33412 ENCODE Processing Pipeline 7ae9a8cbf62137818bd83b824a2f16a5 https://www.encodeproject.org/files/ENCFF998HOR/@@download/ENCFF998HOR.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF441RSZ bigWig signal p-value ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF213CZL, ENCFF829HZY 309397814 ENCODE Processing Pipeline e292250ba0e23b9a0a9d4545af37f6d4 https://www.encodeproject.org/files/ENCFF441RSZ/@@download/ENCFF441RSZ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF153PLB bigWig signal p-value ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF213CZL, ENCFF392XRJ, ENCFF428XVO, ENCFF829HZY 570500050 ENCODE Processing Pipeline 566a7b9129b3d2837e6c40e9662879cb https://www.encodeproject.org/files/ENCFF153PLB/@@download/ENCFF153PLB.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF274APB bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF295GBP 114747 ENCODE Processing Pipeline ee4ce9fb2f22635cae8c53d2a0dd7213 https://www.encodeproject.org/files/ENCFF274APB/@@download/ENCFF274APB.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF679ASU bigWig signal p-value ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF245PJA, ENCFF392VDD, ENCFF422HPM, ENCFF574XYY 648244710 ENCODE Processing Pipeline 5b31c27e6e57effdf44d4480d2f3a9d4 https://www.encodeproject.org/files/ENCFF679ASU/@@download/ENCFF679ASU.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF457BHF bigWig fold change over control ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF213CZL, ENCFF829HZY 181079496 ENCODE Processing Pipeline dd699b7a2f40dc54d1ce79a41394a4bf https://www.encodeproject.org/files/ENCFF457BHF/@@download/ENCFF457BHF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF178MEM bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF213CZL, ENCFF829HZY 3567059 ENCODE Processing Pipeline c0c61074ac70a3165051c4dce66b19a7 https://www.encodeproject.org/files/ENCFF178MEM/@@download/ENCFF178MEM.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF255OTR bigBed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF057OAB 10774509 ENCODE Processing Pipeline 346608820ed9334ca3fbccf9cd3ff336 https://www.encodeproject.org/files/ENCFF255OTR/@@download/ENCFF255OTR.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF896GKF bigWig fold change over control ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF213CZL, ENCFF392XRJ, ENCFF428XVO, ENCFF829HZY 548675987 ENCODE Processing Pipeline 1bf668d4d70d94c01e147f4636d9307a https://www.encodeproject.org/files/ENCFF896GKF/@@download/ENCFF896GKF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF132JRI bigBed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF178MEM 7539504 ENCODE Processing Pipeline 44e68d22babe40633d489d1716e9ea91 https://www.encodeproject.org/files/ENCFF132JRI/@@download/ENCFF132JRI.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF324IOT bigBed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF480PEW 11217249 ENCODE Processing Pipeline a281925cebbd8be39a1cac8894532204 https://www.encodeproject.org/files/ENCFF324IOT/@@download/ENCFF324IOT.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF669QKC bed narrowPeak conservative idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF057OAB, ENCFF178MEM, ENCFF419RSJ, ENCFF480PEW 14214 ENCODE Processing Pipeline 1dcb8ef3234c911a9a0ed3f04ba67ecd https://www.encodeproject.org/files/ENCFF669QKC/@@download/ENCFF669QKC.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF295GBP bed narrowPeak optimal idr thresholded peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF057OAB, ENCFF178MEM, ENCFF419RSJ, ENCFF480PEW 28789 ENCODE Processing Pipeline 68bf42e1127e4d21380226156afcb00f https://www.encodeproject.org/files/ENCFF295GBP/@@download/ENCFF295GBP.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF000PFM bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PFY 473481542 Richard Myers, HAIB 7593eb016241682aa3f52be21adadcd0 https://www.encodeproject.org/files/ENCFF000PFM/@@download/ENCFF000PFM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PFN bigBed broadPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFG 253029 Richard Myers, HAIB f70d02cb0c634cd8500cb74c4b25d5d5 https://www.encodeproject.org/files/ENCFF000PFN/@@download/ENCFF000PFN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PFO bigBed broadPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFH 84303 Richard Myers, HAIB 4a2648b4ef24d23b9266a03b87896ca3 https://www.encodeproject.org/files/ENCFF000PFO/@@download/ENCFF000PFO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PFP bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PGB 979312275 Richard Myers, HAIB ecb86e45d6194a6720642f5ee7939971 https://www.encodeproject.org/files/ENCFF000PFP/@@download/ENCFF000PFP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PFS bigWig raw signal ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 1 28372738 Richard Myers, HAIB ab6349da1c7e697c5b83140dd3fea17c https://www.encodeproject.org/files/ENCFF000PFS/@@download/ENCFF000PFS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PFT bigWig raw signal ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 1 5520116 Richard Myers, HAIB a904f25ccf50a12d2c26561d8adec7ad https://www.encodeproject.org/files/ENCFF000PFT/@@download/ENCFF000PFT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PFY fastq reads ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 805807294 Richard Myers, HAIB a25d3342d27cacdf2b1744ac2fc96428 https://www.encodeproject.org/files/ENCFF000PFY/@@download/ENCFF000PFY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000PGB fastq reads ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 877908046 Richard Myers, HAIB 31f17c1f29dc5ab1d3acbb099641d5ea https://www.encodeproject.org/files/ENCFF000PGB/@@download/ENCFF000PGB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF001UFG bed broadPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 1 87042 Richard Myers, HAIB 7d49ce5d8373b030eb6d63c42d108031 https://www.encodeproject.org/files/ENCFF001UFG/@@download/ENCFF001UFG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF001UFH bed broadPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 1 23251 Richard Myers, HAIB a13f0437a0f1d016a5f1a79c2499c961 https://www.encodeproject.org/files/ENCFF001UFH/@@download/ENCFF001UFH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF002CKC bed narrowPeak optimal idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 72384 ENCODE Consortium Analysis Working Group 2919a05ba376b3d50530b2800affd7b1 https://www.encodeproject.org/files/ENCFF002CKC/@@download/ENCFF002CKC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF644QJT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKC 235530 ENCODE Consortium 97c37db55c3d79ce865681f9684b01f6 https://www.encodeproject.org/files/ENCFF644QJT/@@download/ENCFF644QJT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF257GMO bam unfiltered alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFY, ENCFF643CGH 960695732 ENCODE Processing Pipeline 0c0e04e206318d3a72c134d2a9e0ff26 https://www.encodeproject.org/files/ENCFF257GMO/@@download/ENCFF257GMO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF404QMD bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFY, ENCFF643CGH 272813134 ENCODE Processing Pipeline 58df179211557df3e97d87f74a1940f1 https://www.encodeproject.org/files/ENCFF404QMD/@@download/ENCFF404QMD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF212NXE bam unfiltered alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PGB, ENCFF643CGH 1177807552 ENCODE Processing Pipeline 0e14383d168f92f5525d8bb095600e57 https://www.encodeproject.org/files/ENCFF212NXE/@@download/ENCFF212NXE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF964ESQ bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PGB, ENCFF643CGH 678130504 ENCODE Processing Pipeline 2c166cee3bb4f852c7f688c7f69a85c8 https://www.encodeproject.org/files/ENCFF964ESQ/@@download/ENCFF964ESQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF529FSM bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFY, ENCFF807MUK 272968981 ENCODE Processing Pipeline 374418505d032b4f967593887dff6739 https://www.encodeproject.org/files/ENCFF529FSM/@@download/ENCFF529FSM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF115FYJ bam unfiltered alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFY, ENCFF807MUK 957501824 ENCODE Processing Pipeline 01e3288faeab65420d796fd122b9ada0 https://www.encodeproject.org/files/ENCFF115FYJ/@@download/ENCFF115FYJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF498PCU bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PGB, ENCFF807MUK 678419576 ENCODE Processing Pipeline 0907a67103816d668a17dc757866f5c7 https://www.encodeproject.org/files/ENCFF498PCU/@@download/ENCFF498PCU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF056IYF bam unfiltered alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PGB, ENCFF807MUK 1171693855 ENCODE Processing Pipeline c08728a1498748b22fa1aa6c9ae84f0a https://www.encodeproject.org/files/ENCFF056IYF/@@download/ENCFF056IYF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF556DAL bigWig signal p-value ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF404QMD 517097209 ENCODE Processing Pipeline ad9c40d94426a956b892731985cbf1b2 https://www.encodeproject.org/files/ENCFF556DAL/@@download/ENCFF556DAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF917ZVN bigWig signal p-value ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF964ESQ 639924239 ENCODE Processing Pipeline 5ec27cb0cc9f8c60e40b3a43f4cb4675 https://www.encodeproject.org/files/ENCFF917ZVN/@@download/ENCFF917ZVN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF115QZF bigWig signal p-value ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QMD, ENCFF964ESQ 700879512 ENCODE Processing Pipeline 076ef5734d55444bd83972d38bddd351 https://www.encodeproject.org/files/ENCFF115QZF/@@download/ENCFF115QZF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF757FWM bigWig fold change over control ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF404QMD 211060024 ENCODE Processing Pipeline 08c646bceafbec85d1a2055a4d10396b https://www.encodeproject.org/files/ENCFF757FWM/@@download/ENCFF757FWM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF902KXM bigWig fold change over control ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF964ESQ 455429227 ENCODE Processing Pipeline 16e0a59ccb22f2ad41cae4e1e0832ed9 https://www.encodeproject.org/files/ENCFF902KXM/@@download/ENCFF902KXM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF280RSN bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF404QMD 3735965 ENCODE Processing Pipeline ed773a926b50ca1f318e4ca5e98a5463 https://www.encodeproject.org/files/ENCFF280RSN/@@download/ENCFF280RSN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF016XRZ bigWig fold change over control ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QMD, ENCFF964ESQ 587142661 ENCODE Processing Pipeline 6bc7bf2421d39bd1fa6611a0fcdf3200 https://www.encodeproject.org/files/ENCFF016XRZ/@@download/ENCFF016XRZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF106UQZ bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF964ESQ 4004624 ENCODE Processing Pipeline 0038af049ea2685e20e43fa2cfb59b6c https://www.encodeproject.org/files/ENCFF106UQZ/@@download/ENCFF106UQZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF923DXV bigBed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF280RSN 7965354 ENCODE Processing Pipeline aa8ba617f47faf57eea830d6027959d3 https://www.encodeproject.org/files/ENCFF923DXV/@@download/ENCFF923DXV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF407CWP bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QMD, ENCFF964ESQ 4470583 ENCODE Processing Pipeline 7fd2b5b4e7dfa809595132274401e446 https://www.encodeproject.org/files/ENCFF407CWP/@@download/ENCFF407CWP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF405LXW bigBed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF106UQZ 8878814 ENCODE Processing Pipeline dfb03871557faa61d60f4a5dd823cf48 https://www.encodeproject.org/files/ENCFF405LXW/@@download/ENCFF405LXW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF373FUS bed narrowPeak conservative idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF106UQZ, ENCFF280RSN, ENCFF407CWP, ENCFF419RSJ 49458 ENCODE Processing Pipeline a871b7053709d57b01b3efc95802783a https://www.encodeproject.org/files/ENCFF373FUS/@@download/ENCFF373FUS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF390DRL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF373FUS 124411 ENCODE Processing Pipeline d79343d30671b826a45256a68b8d0ae8 https://www.encodeproject.org/files/ENCFF390DRL/@@download/ENCFF390DRL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF007VFQ bigBed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF407CWP 11179947 ENCODE Processing Pipeline acb6f1411550afe14051df03fa017706 https://www.encodeproject.org/files/ENCFF007VFQ/@@download/ENCFF007VFQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF361YXC bed narrowPeak optimal idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF106UQZ, ENCFF280RSN, ENCFF407CWP, ENCFF419RSJ 64188 ENCODE Processing Pipeline c5d68c094a9843dfebfb1092605233ca https://www.encodeproject.org/files/ENCFF361YXC/@@download/ENCFF361YXC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF501FMD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF361YXC 170809 ENCODE Processing Pipeline ba5506ea5e233bc79d0a9670a096bd43 https://www.encodeproject.org/files/ENCFF501FMD/@@download/ENCFF501FMD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF375PNG bigWig signal p-value ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF529FSM 546148786 ENCODE Processing Pipeline e531bb5a30e400c4551a51149cef31b8 https://www.encodeproject.org/files/ENCFF375PNG/@@download/ENCFF375PNG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF228FID bigWig fold change over control ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF529FSM 211764369 ENCODE Processing Pipeline 683b6ed557dc7005d954a1ddb86174c7 https://www.encodeproject.org/files/ENCFF228FID/@@download/ENCFF228FID.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF335LWD bigWig signal p-value ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU 603858431 ENCODE Processing Pipeline ca433084b962e1c48a7f1610b35f3872 https://www.encodeproject.org/files/ENCFF335LWD/@@download/ENCFF335LWD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF316SOG bigWig signal p-value ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU, ENCFF529FSM 693582795 ENCODE Processing Pipeline 0b0ee4975ed3543be2648f3ace1c052d https://www.encodeproject.org/files/ENCFF316SOG/@@download/ENCFF316SOG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF859SXF bigWig fold change over control ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU 453161868 ENCODE Processing Pipeline af71d8b75257640486008c2648f5edcd https://www.encodeproject.org/files/ENCFF859SXF/@@download/ENCFF859SXF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF747YKU bigWig fold change over control ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU, ENCFF529FSM 580477957 ENCODE Processing Pipeline 972311b85b372379eaa457f7b09cfa26 https://www.encodeproject.org/files/ENCFF747YKU/@@download/ENCFF747YKU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF626BVG bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF529FSM 3758228 ENCODE Processing Pipeline efa6e441abe311e7ddffe6e8a7adb261 https://www.encodeproject.org/files/ENCFF626BVG/@@download/ENCFF626BVG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF333ZRM bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU 4006533 ENCODE Processing Pipeline f820d162981ee44761af9e9e7721d791 https://www.encodeproject.org/files/ENCFF333ZRM/@@download/ENCFF333ZRM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF362AJI bigBed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF333ZRM 8877805 ENCODE Processing Pipeline 24ebbf3b56b090b84b94c93ec3420c6f https://www.encodeproject.org/files/ENCFF362AJI/@@download/ENCFF362AJI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF033OJD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF252DIG 123976 ENCODE Processing Pipeline 4a489b64d23ba6155caf875c418f0cc1 https://www.encodeproject.org/files/ENCFF033OJD/@@download/ENCFF033OJD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF028BDC bed narrowPeak optimal idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF215GXO, ENCFF333ZRM, ENCFF626BVG 61955 ENCODE Processing Pipeline a5acbe34ad3e7ba0f7923a00120943fc https://www.encodeproject.org/files/ENCFF028BDC/@@download/ENCFF028BDC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF877QUV bigBed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF626BVG 8007940 ENCODE Processing Pipeline 8bd2af9188f2fb02782b56585963cd55 https://www.encodeproject.org/files/ENCFF877QUV/@@download/ENCFF877QUV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF252DIG bed narrowPeak conservative idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF215GXO, ENCFF333ZRM, ENCFF626BVG 49485 ENCODE Processing Pipeline 4ff6589f7f1461cee92c644cb842f1d4 https://www.encodeproject.org/files/ENCFF252DIG/@@download/ENCFF252DIG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF215GXO bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU, ENCFF529FSM 4523021 ENCODE Processing Pipeline 24356238824ddbc654d1be8059c4918c https://www.encodeproject.org/files/ENCFF215GXO/@@download/ENCFF215GXO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF914YCB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF028BDC 166698 ENCODE Processing Pipeline 8922c708b830faf8e739b3f176a85c4b https://www.encodeproject.org/files/ENCFF914YCB/@@download/ENCFF914YCB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF442UVG bigBed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF215GXO 11195825 ENCODE Processing Pipeline 5eeccc61bd76997abf3891c2f8663c8c https://www.encodeproject.org/files/ENCFF442UVG/@@download/ENCFF442UVG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000ORS bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OSA 605210369 Richard Myers, HAIB 23fd3566a1b079b23fdfcfe3e3831cf4 https://www.encodeproject.org/files/ENCFF000ORS/@@download/ENCFF000ORS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ORT bigBed broadPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCC 1479064 Richard Myers, HAIB 457a48e357626c3150d8fed9d8acfdf1 https://www.encodeproject.org/files/ENCFF000ORT/@@download/ENCFF000ORT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ORU bigBed broadPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCE 2422094 Richard Myers, HAIB ec23540e3700932c4a50f3ec20bd2541 https://www.encodeproject.org/files/ENCFF000ORU/@@download/ENCFF000ORU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ORX bigWig raw signal ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 38471570 Richard Myers, HAIB d102d2e8c0a082d4b8daf016153828ef https://www.encodeproject.org/files/ENCFF000ORX/@@download/ENCFF000ORX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000ORY bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OSG 2227307179 Richard Myers, HAIB f4ae92e17c3064ce4b4dcc81d4c65524 https://www.encodeproject.org/files/ENCFF000ORY/@@download/ENCFF000ORY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ORZ bigWig raw signal ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 121916485 Richard Myers, HAIB d7a229c64812c5f2940ff670d2669077 https://www.encodeproject.org/files/ENCFF000ORZ/@@download/ENCFF000ORZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000OSA fastq reads ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 536906509 Richard Myers, HAIB 8cabfdfea396ddcbffe70e005dbd7581 https://www.encodeproject.org/files/ENCFF000OSA/@@download/ENCFF000OSA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000OSG fastq reads ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2992771497 Richard Myers, HAIB 10a5f05ec133779ca3f7d06ec0367d00 https://www.encodeproject.org/files/ENCFF000OSG/@@download/ENCFF000OSG.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF001UCC bed broadPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 993163 Richard Myers, HAIB db497a5e067741ee57b37b3ca920cf34 https://www.encodeproject.org/files/ENCFF001UCC/@@download/ENCFF001UCC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UCE bed broadPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 1376960 Richard Myers, HAIB bb3207c12a6b0ecdb720ffbe3955bb64 https://www.encodeproject.org/files/ENCFF001UCE/@@download/ENCFF001UCE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002CJG bed narrowPeak optimal idr thresholded peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1681653 ENCODE Consortium Analysis Working Group 5430340eb9fc27a77685a961af585d94 https://www.encodeproject.org/files/ENCFF002CJG/@@download/ENCFF002CJG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF211NNX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJG 3397227 ENCODE Consortium 118dc712a9fea105c536a4273cb3241b https://www.encodeproject.org/files/ENCFF211NNX/@@download/ENCFF211NNX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF007KVW bam unfiltered alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSA, ENCFF643CGH 688318231 ENCODE Processing Pipeline 63fa9af4b79730e79e7d0005af623871 https://www.encodeproject.org/files/ENCFF007KVW/@@download/ENCFF007KVW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF987DEN bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSA, ENCFF643CGH 464079924 ENCODE Processing Pipeline d29dcd7ab4cf7ed709531dae5e2fc311 https://www.encodeproject.org/files/ENCFF987DEN/@@download/ENCFF987DEN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF193ZXJ bam unfiltered alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSG, ENCFF643CGH 3384418945 ENCODE Processing Pipeline ffa95acaa0090d4bbf2b834b301c7a73 https://www.encodeproject.org/files/ENCFF193ZXJ/@@download/ENCFF193ZXJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF219RFB bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSG, ENCFF643CGH 1300599621 ENCODE Processing Pipeline f9d4f258a50ba76d9fca8e9ac49497a9 https://www.encodeproject.org/files/ENCFF219RFB/@@download/ENCFF219RFB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF944SJF bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSA, ENCFF807MUK 464404189 ENCODE Processing Pipeline 04ee2be1929f9b781024dd5ae569f28e https://www.encodeproject.org/files/ENCFF944SJF/@@download/ENCFF944SJF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF433GKX bam unfiltered alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSA, ENCFF807MUK 686873452 ENCODE Processing Pipeline b6d5164484d5faa79da71c2132b2ac3b https://www.encodeproject.org/files/ENCFF433GKX/@@download/ENCFF433GKX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF746RLX bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSG, ENCFF807MUK 1301082160 ENCODE Processing Pipeline c0d4bb6cdc5e945ea32ea3f58e6c81a4 https://www.encodeproject.org/files/ENCFF746RLX/@@download/ENCFF746RLX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF527RKH bam unfiltered alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSG, ENCFF807MUK 3376879194 ENCODE Processing Pipeline f8ac2863aa46eb102d25eed61709926c https://www.encodeproject.org/files/ENCFF527RKH/@@download/ENCFF527RKH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF059COV bigWig signal p-value ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF219RFB 530861294 ENCODE Processing Pipeline 7e648f0ab7c8ed7fb92c2edd0878e0ca https://www.encodeproject.org/files/ENCFF059COV/@@download/ENCFF059COV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF904MGK bigWig fold change over control ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF987DEN 248802482 ENCODE Processing Pipeline 2d03b45bc2a2b1e1557fa91e71594a71 https://www.encodeproject.org/files/ENCFF904MGK/@@download/ENCFF904MGK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF719IXP bigWig signal p-value ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF987DEN 383872848 ENCODE Processing Pipeline 9f4c442779dbc44d1bdc7af62bd615a1 https://www.encodeproject.org/files/ENCFF719IXP/@@download/ENCFF719IXP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF510RNH bigWig signal p-value ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF219RFB, ENCFF987DEN 526104011 ENCODE Processing Pipeline 4afd4fc9c4258034ce62956b268ba2a4 https://www.encodeproject.org/files/ENCFF510RNH/@@download/ENCFF510RNH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF925MPO bigBed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF635UVJ 11656022 ENCODE Processing Pipeline 86b388c90e2e8d5d452d763ced0fd3d5 https://www.encodeproject.org/files/ENCFF925MPO/@@download/ENCFF925MPO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF924QAP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060IVS 1999198 ENCODE Processing Pipeline 7cabf2ddc1dbd368ff184a566c597da6 https://www.encodeproject.org/files/ENCFF924QAP/@@download/ENCFF924QAP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF164PQM bigWig fold change over control ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF219RFB 502411445 ENCODE Processing Pipeline 587b1418fb6867e58ded750ec5c17611 https://www.encodeproject.org/files/ENCFF164PQM/@@download/ENCFF164PQM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF635UVJ bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF219RFB 5566291 ENCODE Processing Pipeline 5341c749f0ebe833ec6e5da95129ad5e https://www.encodeproject.org/files/ENCFF635UVJ/@@download/ENCFF635UVJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF987WYM bigBed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF606VTZ 11839730 ENCODE Processing Pipeline d89828964f8f4acadfa06c400d6d1365 https://www.encodeproject.org/files/ENCFF987WYM/@@download/ENCFF987WYM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF791XXJ bigWig fold change over control ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF219RFB, ENCFF987DEN 635279405 ENCODE Processing Pipeline 51af4152ae9c8f999c6d8b1828066b09 https://www.encodeproject.org/files/ENCFF791XXJ/@@download/ENCFF791XXJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF606VTZ bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF219RFB, ENCFF987DEN 5851318 ENCODE Processing Pipeline 12b7d7f65782dcdf04d3d0984a3f47cf https://www.encodeproject.org/files/ENCFF606VTZ/@@download/ENCFF606VTZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF753SMK bigBed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF498COE 10798486 ENCODE Processing Pipeline fe1932223ea3b6457bee629f2ba72d59 https://www.encodeproject.org/files/ENCFF753SMK/@@download/ENCFF753SMK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF498COE bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF987DEN 4508470 ENCODE Processing Pipeline 91b21089b8b71e621ad77b2e99b1947a https://www.encodeproject.org/files/ENCFF498COE/@@download/ENCFF498COE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF060IVS bed narrowPeak optimal idr thresholded peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF498COE, ENCFF606VTZ, ENCFF635UVJ 1187766 ENCODE Processing Pipeline a8c72827b71b341202ede8867c201a8b https://www.encodeproject.org/files/ENCFF060IVS/@@download/ENCFF060IVS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF967SSU bigWig signal p-value ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944SJF 364986870 ENCODE Processing Pipeline 794e462f2a28850ee0ff866c6531e2d1 https://www.encodeproject.org/files/ENCFF967SSU/@@download/ENCFF967SSU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF718XMT bigWig fold change over control ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944SJF 250731309 ENCODE Processing Pipeline 60f908073f43536c87ddb21d72a172bd https://www.encodeproject.org/files/ENCFF718XMT/@@download/ENCFF718XMT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF754ZGR bigWig signal p-value ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF746RLX 531181565 ENCODE Processing Pipeline fdeadb379682c1a78f745c81572b3b0a https://www.encodeproject.org/files/ENCFF754ZGR/@@download/ENCFF754ZGR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF289TDQ bigWig signal p-value ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF746RLX, ENCFF944SJF 526447932 ENCODE Processing Pipeline 28f6574982228dccc9ae934147448bcd https://www.encodeproject.org/files/ENCFF289TDQ/@@download/ENCFF289TDQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF134STN bigWig fold change over control ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF746RLX 501249676 ENCODE Processing Pipeline cf6c066c5451a30fcc4bbcf6bd53829c https://www.encodeproject.org/files/ENCFF134STN/@@download/ENCFF134STN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF491HEO bigWig fold change over control ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF746RLX, ENCFF944SJF 634494695 ENCODE Processing Pipeline cbda6d67c4d1578a09d5c34d8c11ce86 https://www.encodeproject.org/files/ENCFF491HEO/@@download/ENCFF491HEO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF474BFW bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944SJF 4366278 ENCODE Processing Pipeline 4008d402db31e69859e5275661f86729 https://www.encodeproject.org/files/ENCFF474BFW/@@download/ENCFF474BFW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF216OCU bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF746RLX 5570790 ENCODE Processing Pipeline 8c6f2b5a870cb7eebd87f84e106a7e17 https://www.encodeproject.org/files/ENCFF216OCU/@@download/ENCFF216OCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF428PSB bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF746RLX, ENCFF944SJF 5853212 ENCODE Processing Pipeline e4456f7aebf677e42ba1d961cd5fc47b https://www.encodeproject.org/files/ENCFF428PSB/@@download/ENCFF428PSB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF899CXR bigBed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF428PSB 11839160 ENCODE Processing Pipeline 3dbf3344ce426f59850e4441b590a0c4 https://www.encodeproject.org/files/ENCFF899CXR/@@download/ENCFF899CXR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF824FIL bed narrowPeak optimal idr thresholded peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF216OCU, ENCFF428PSB, ENCFF474BFW 1187834 ENCODE Processing Pipeline 23e386dd5736b37be6fee217c9b4406b https://www.encodeproject.org/files/ENCFF824FIL/@@download/ENCFF824FIL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF892DFC bigBed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF216OCU 11656564 ENCODE Processing Pipeline b3c1d7233fcc318cea2d072343281198 https://www.encodeproject.org/files/ENCFF892DFC/@@download/ENCFF892DFC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF571OUU bigBed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF474BFW 10579358 ENCODE Processing Pipeline cf6bbd0452aba14e42f481afd418ce36 https://www.encodeproject.org/files/ENCFF571OUU/@@download/ENCFF571OUU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF545MBA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF824FIL 1998315 ENCODE Processing Pipeline dacba6a3ab4b28af4ea14f9825de7e92 https://www.encodeproject.org/files/ENCFF545MBA/@@download/ENCFF545MBA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF160GSI fastq reads ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF076CUB 3236455409 Michael Snyder, Stanford 35dc08f8d0f30bfa60bf7d4dab152b89 SRA:SRR6212864 https://www.encodeproject.org/files/ENCFF160GSI/@@download/ENCFF160GSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released ENCFF076CUB fastq reads ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF160GSI 3260865609 Michael Snyder, Stanford 19b2407d1f1003aed1c4f4d7cbe91f55 SRA:SRR6212864 https://www.encodeproject.org/files/ENCFF076CUB/@@download/ENCFF076CUB.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released ENCFF762OUK fastq reads ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF164NLU 3178895397 Michael Snyder, Stanford b05e442bc3e9504c969bea8d0cfba70a SRA:SRR6212863 https://www.encodeproject.org/files/ENCFF762OUK/@@download/ENCFF762OUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released ENCFF164NLU fastq reads ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF762OUK 3217290223 Michael Snyder, Stanford c77883bcd7f4488f809be6f21ee58426 SRA:SRR6212863 https://www.encodeproject.org/files/ENCFF164NLU/@@download/ENCFF164NLU.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released ENCFF170KIF bam unfiltered alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF164NLU, ENCFF762OUK, ENCFF807MUK 6767028399 ENCODE Processing Pipeline 77ff38b0b2db57292cd40b7e527012aa https://www.encodeproject.org/files/ENCFF170KIF/@@download/ENCFF170KIF.bam hg19 released ENCFF073PLZ bam unfiltered alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF076CUB, ENCFF160GSI, ENCFF807MUK 6901029136 ENCODE Processing Pipeline 3ac50bd16f07c4fe113b722dc0bc731e https://www.encodeproject.org/files/ENCFF073PLZ/@@download/ENCFF073PLZ.bam hg19 released ENCFF372DMD bam unfiltered alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF164NLU, ENCFF643CGH, ENCFF762OUK 6771849195 ENCODE Processing Pipeline 41ca29ab054193fe46d0d58558790b19 https://www.encodeproject.org/files/ENCFF372DMD/@@download/ENCFF372DMD.bam GRCh38 released ENCFF618BLM bam unfiltered alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF076CUB, ENCFF160GSI, ENCFF643CGH 6906066771 ENCODE Processing Pipeline 1715cb6a6bb7090d2a7a736e07a5f53d https://www.encodeproject.org/files/ENCFF618BLM/@@download/ENCFF618BLM.bam GRCh38 released ENCFF358AIJ bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF164NLU, ENCFF643CGH, ENCFF762OUK 5529535355 ENCODE Processing Pipeline 242be94d9320a8b27c152687ba075588 https://www.encodeproject.org/files/ENCFF358AIJ/@@download/ENCFF358AIJ.bam GRCh38 released ENCFF152YRC bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF164NLU, ENCFF762OUK, ENCFF807MUK 5526568143 ENCODE Processing Pipeline 5ee48ad0eb31cb536b68a548a617f9bc https://www.encodeproject.org/files/ENCFF152YRC/@@download/ENCFF152YRC.bam hg19 released ENCFF279CMU bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF076CUB, ENCFF160GSI, ENCFF807MUK 5486539485 ENCODE Processing Pipeline 621c5869629cffe9ff7cabb12adef119 https://www.encodeproject.org/files/ENCFF279CMU/@@download/ENCFF279CMU.bam hg19 released ENCFF752QAV bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF076CUB, ENCFF160GSI, ENCFF643CGH 5490983413 ENCODE Processing Pipeline 04a71ee2c50dbd788ecfa95870aa2977 https://www.encodeproject.org/files/ENCFF752QAV/@@download/ENCFF752QAV.bam GRCh38 released ENCFF454UYV bigWig signal p-value ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF152YRC, ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 1932308961 ENCODE Processing Pipeline 8a7098e3219cf65255bf44ac48756d02 https://www.encodeproject.org/files/ENCFF454UYV/@@download/ENCFF454UYV.bigWig hg19 released ENCFF091SVZ bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF152YRC, ENCFF262CJE, ENCFF506DFV 6856226 ENCODE Processing Pipeline 4e7a4ded12661478c26f98ae7f2cf478 https://www.encodeproject.org/files/ENCFF091SVZ/@@download/ENCFF091SVZ.bed.gz hg19 released ENCFF269YNO bigWig fold change over control ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF152YRC, ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 2095261190 ENCODE Processing Pipeline d63c896880181ba6412e6338c7f4e90e https://www.encodeproject.org/files/ENCFF269YNO/@@download/ENCFF269YNO.bigWig hg19 released ENCFF958FLX bigWig signal p-value ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 1274403768 ENCODE Processing Pipeline f3d6d0bd0a38fd84eb0e00ffaa71753b https://www.encodeproject.org/files/ENCFF958FLX/@@download/ENCFF958FLX.bigWig hg19 released ENCFF009XQL bigBed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF618ORM 13365376 ENCODE Processing Pipeline f54bee97b25d9f498268fd691c6e5589 https://www.encodeproject.org/files/ENCFF009XQL/@@download/ENCFF009XQL.bigBed hg19 released ENCFF155RQK bigBed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF091SVZ 13275445 ENCODE Processing Pipeline 13b194c8fdcd401e007171d06cf48abd https://www.encodeproject.org/files/ENCFF155RQK/@@download/ENCFF155RQK.bigBed hg19 released ENCFF804TFY bigBed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF797ZNP 13179970 ENCODE Processing Pipeline b0f4915f34f8cb6d6eacceae4d6e7944 https://www.encodeproject.org/files/ENCFF804TFY/@@download/ENCFF804TFY.bigBed hg19 released ENCFF185CUE bigWig fold change over control ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 1501069205 ENCODE Processing Pipeline 1c3d0c37e4203e6f3e49818f4dd0bbb0 https://www.encodeproject.org/files/ENCFF185CUE/@@download/ENCFF185CUE.bigWig hg19 released ENCFF391IQL bigWig signal p-value ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF152YRC, ENCFF262CJE, ENCFF506DFV 1538100440 ENCODE Processing Pipeline d5695cfc0ec0a76edebdce829b98fda4 https://www.encodeproject.org/files/ENCFF391IQL/@@download/ENCFF391IQL.bigWig hg19 released ENCFF284SLE bigWig fold change over control ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF152YRC, ENCFF262CJE, ENCFF506DFV 1496800827 ENCODE Processing Pipeline 3d3f27c1e8c34beeb75fb4badffac0eb https://www.encodeproject.org/files/ENCFF284SLE/@@download/ENCFF284SLE.bigWig hg19 released ENCFF618ORM bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 6695600 ENCODE Processing Pipeline fd82e2ffab70d020916fc31f1e944d4d https://www.encodeproject.org/files/ENCFF618ORM/@@download/ENCFF618ORM.bed.gz hg19 released ENCFF797ZNP bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF152YRC, ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 7251282 ENCODE Processing Pipeline c8b487a5b3ee95432156f38f33682a29 https://www.encodeproject.org/files/ENCFF797ZNP/@@download/ENCFF797ZNP.bed.gz hg19 released ENCFF548QSU bigBed narrowPeak conservative idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF987JFX 456920 ENCODE Processing Pipeline f514bcae2d315138f3ffd1ce9f21019c https://www.encodeproject.org/files/ENCFF548QSU/@@download/ENCFF548QSU.bigBed hg19 released ENCFF641FHU bigBed narrowPeak optimal idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF253FZN 577908 ENCODE Processing Pipeline c47a46e387f7aa065337eb574a36557d https://www.encodeproject.org/files/ENCFF641FHU/@@download/ENCFF641FHU.bigBed hg19 released ENCFF253FZN bed narrowPeak optimal idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF091SVZ, ENCFF618ORM, ENCFF797ZNP 283170 ENCODE Processing Pipeline 3cc7e08b654255b1a17d4805f8bf51d1 https://www.encodeproject.org/files/ENCFF253FZN/@@download/ENCFF253FZN.bed.gz hg19 released ENCFF987JFX bed narrowPeak conservative idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF091SVZ, ENCFF618ORM, ENCFF797ZNP 208406 ENCODE Processing Pipeline 3668f7aca7d070b5501f345b29806e3d https://www.encodeproject.org/files/ENCFF987JFX/@@download/ENCFF987JFX.bed.gz hg19 released ENCFF642QPU bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF358AIJ, ENCFF720AUK, ENCFF796JTX 6860984 ENCODE Processing Pipeline 1d222ceb57eae8c81d6ff7726c2791dd https://www.encodeproject.org/files/ENCFF642QPU/@@download/ENCFF642QPU.bed.gz GRCh38 released ENCFF854LGO bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF358AIJ, ENCFF720AUK, ENCFF752QAV, ENCFF796JTX 7265411 ENCODE Processing Pipeline 9496c98b99f19ae45b315989764d4aa5 https://www.encodeproject.org/files/ENCFF854LGO/@@download/ENCFF854LGO.bed.gz GRCh38 released ENCFF993VFQ bigBed narrowPeak conservative idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF407WIN 461517 ENCODE Processing Pipeline 3130f9c160bd858e24d6972fb2e20d9f https://www.encodeproject.org/files/ENCFF993VFQ/@@download/ENCFF993VFQ.bigBed GRCh38 released ENCFF690RXL bigWig signal p-value ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF720AUK, ENCFF752QAV, ENCFF796JTX 1511711292 ENCODE Processing Pipeline 363a4d49241232070e74cf083759c41d https://www.encodeproject.org/files/ENCFF690RXL/@@download/ENCFF690RXL.bigWig GRCh38 released ENCFF903BAS bigWig signal p-value ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF358AIJ, ENCFF720AUK, ENCFF796JTX 1498392540 ENCODE Processing Pipeline 16f14270b7e7a4d106a87c7168f76820 https://www.encodeproject.org/files/ENCFF903BAS/@@download/ENCFF903BAS.bigWig GRCh38 released ENCFF083UHR bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF720AUK, ENCFF752QAV, ENCFF796JTX 6701785 ENCODE Processing Pipeline 83533ed2e5dda44908aed11e666a5252 https://www.encodeproject.org/files/ENCFF083UHR/@@download/ENCFF083UHR.bed.gz GRCh38 released ENCFF407WIN bed narrowPeak conservative idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF083UHR, ENCFF419RSJ, ENCFF642QPU, ENCFF854LGO 210272 ENCODE Processing Pipeline 33e0239a399f900ebc8bfece3654db79 https://www.encodeproject.org/files/ENCFF407WIN/@@download/ENCFF407WIN.bed.gz GRCh38 released ENCFF671IKS bigBed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF854LGO 13188255 ENCODE Processing Pipeline 7f775c4cf444d31c8459c37a487f3207 https://www.encodeproject.org/files/ENCFF671IKS/@@download/ENCFF671IKS.bigBed GRCh38 released ENCFF591ERS bigWig fold change over control ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF720AUK, ENCFF752QAV, ENCFF796JTX 1495954442 ENCODE Processing Pipeline 208b074fb1c5fd34c5121a9338ea1705 https://www.encodeproject.org/files/ENCFF591ERS/@@download/ENCFF591ERS.bigWig GRCh38 released ENCFF438XQD bigBed narrowPeak optimal idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF950ZWP 568780 ENCODE Processing Pipeline 93b2ab32458e2b7cf0186212ef9c7d87 https://www.encodeproject.org/files/ENCFF438XQD/@@download/ENCFF438XQD.bigBed GRCh38 released ENCFF714OII bigWig fold change over control ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF358AIJ, ENCFF720AUK, ENCFF752QAV, ENCFF796JTX 2089893858 ENCODE Processing Pipeline 7d617c4db92145dd742c1a58dab001ee https://www.encodeproject.org/files/ENCFF714OII/@@download/ENCFF714OII.bigWig GRCh38 released ENCFF116YHT bigBed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF642QPU 13293654 ENCODE Processing Pipeline e44fc46775eb5eb01e9c0713aa02c2ba https://www.encodeproject.org/files/ENCFF116YHT/@@download/ENCFF116YHT.bigBed GRCh38 released ENCFF950ZWP bed narrowPeak optimal idr thresholded peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF083UHR, ENCFF419RSJ, ENCFF642QPU, ENCFF854LGO 277248 ENCODE Processing Pipeline 8117fabe58b052c163d80a8ed93d2451 https://www.encodeproject.org/files/ENCFF950ZWP/@@download/ENCFF950ZWP.bed.gz GRCh38 released ENCFF975GDE bigWig signal p-value ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF358AIJ, ENCFF720AUK, ENCFF752QAV, ENCFF796JTX 1929751091 ENCODE Processing Pipeline 61ba3fdfe32cd8a0a7ec85f37a08d326 https://www.encodeproject.org/files/ENCFF975GDE/@@download/ENCFF975GDE.bigWig GRCh38 released ENCFF693JFQ bigWig fold change over control ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF358AIJ, ENCFF720AUK, ENCFF796JTX 1520174001 ENCODE Processing Pipeline 3847a20da32bb707481b81d642660059 https://www.encodeproject.org/files/ENCFF693JFQ/@@download/ENCFF693JFQ.bigWig GRCh38 released ENCFF182VWV bigBed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF083UHR 13383016 ENCODE Processing Pipeline 98a8f31980c2813f402d51559d33f4e8 https://www.encodeproject.org/files/ENCFF182VWV/@@download/ENCFF182VWV.bigBed GRCh38 released ENCFF000VWS bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VXD 364929056 Michael Snyder, Stanford 97dfc3f42cecedd86a0062b08430b971 https://www.encodeproject.org/files/ENCFF000VWS/@@download/ENCFF000VWS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VWT bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEK 538784 Michael Snyder, Stanford 7c8c8d62cad019f51fbd20096479dae1 https://www.encodeproject.org/files/ENCFF000VWT/@@download/ENCFF000VWT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VWU bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VXI 501808267 Michael Snyder, Stanford 15c9ab1bf9ca3976d93d10349ac5b26f https://www.encodeproject.org/files/ENCFF000VWU/@@download/ENCFF000VWU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VWW bigWig signal ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 309235830 Michael Snyder, Stanford 937ffd69e5d4ed84a2d3a84f25285027 https://www.encodeproject.org/files/ENCFF000VWW/@@download/ENCFF000VWW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VXD fastq reads ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 821754419 Michael Snyder, Stanford 1355750990a2c1459a0f36fb3947b277 https://www.encodeproject.org/files/ENCFF000VXD/@@download/ENCFF000VXD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released borderline replicate concordance, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000VXI fastq reads ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1020709586 Michael Snyder, Stanford c6b2774b5f8f08adaf300d89466bb7ab https://www.encodeproject.org/files/ENCFF000VXI/@@download/ENCFF000VXI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released borderline replicate concordance, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF001VEK bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 290220 Michael Snyder, Stanford 16c07e6692536c56243b4faf6c4b6c2a https://www.encodeproject.org/files/ENCFF001VEK/@@download/ENCFF001VEK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF465UKD bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF643CGH 1116958899 ENCODE Processing Pipeline bfd25fa7d39c1da93657f3e0bddda288 https://www.encodeproject.org/files/ENCFF465UKD/@@download/ENCFF465UKD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF489KNC bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF643CGH 884724485 ENCODE Processing Pipeline b7f1cad76e3e6a7939409c8d0f4e7c2f https://www.encodeproject.org/files/ENCFF489KNC/@@download/ENCFF489KNC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF935OOR bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF643CGH 670126053 ENCODE Processing Pipeline 5d5c19d35d8e5976f61e7fb92fe3a301 https://www.encodeproject.org/files/ENCFF935OOR/@@download/ENCFF935OOR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF519GVE bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF643CGH 494931638 ENCODE Processing Pipeline e31bbb788c62f1aef00040428ade11b4 https://www.encodeproject.org/files/ENCFF519GVE/@@download/ENCFF519GVE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF962GER bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF807MUK 880737510 ENCODE Processing Pipeline 3a48d059529dfdd1064d85f0b9c1a5f5 https://www.encodeproject.org/files/ENCFF962GER/@@download/ENCFF962GER.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF920XYY bam unfiltered alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF807MUK 1110887097 ENCODE Processing Pipeline e8cad1f1368d4ef66d6bf58fd2cf0e66 https://www.encodeproject.org/files/ENCFF920XYY/@@download/ENCFF920XYY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF205RMR bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF807MUK 493320684 ENCODE Processing Pipeline 445adae8bfe5c17c9dac401c0d8b0a0e https://www.encodeproject.org/files/ENCFF205RMR/@@download/ENCFF205RMR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF083VSQ bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF807MUK 669689385 ENCODE Processing Pipeline b583afe624ddb0aab2f099ea62fae064 https://www.encodeproject.org/files/ENCFF083VSQ/@@download/ENCFF083VSQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF308RNF bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 194005028 ENCODE Processing Pipeline 4ce756473cfb60390b444d87a080db43 https://www.encodeproject.org/files/ENCFF308RNF/@@download/ENCFF308RNF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF505BOW bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 218294487 ENCODE Processing Pipeline badc0e2e36e6dcc153f238dee5ba97e8 https://www.encodeproject.org/files/ENCFF505BOW/@@download/ENCFF505BOW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF816DRH bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF083VSQ, ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 160800960 ENCODE Processing Pipeline 0bf3a8e7880d10629d5cf96e8751dd43 https://www.encodeproject.org/files/ENCFF816DRH/@@download/ENCFF816DRH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF303TVZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF271PVK, ENCFF434CQV, ENCFF678BIU 36479 ENCODE Processing Pipeline 814f0bb635cc8a5600eb2018921ab663 https://www.encodeproject.org/files/ENCFF303TVZ/@@download/ENCFF303TVZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF551LWV bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 71781328 ENCODE Processing Pipeline eda3c4b27806bb4bfb7c08ce3f960fd8 https://www.encodeproject.org/files/ENCFF551LWV/@@download/ENCFF551LWV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF660VHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF303TVZ 115297 ENCODE Processing Pipeline 331ef8540a82cdae1ed5b17d3bdaad3f https://www.encodeproject.org/files/ENCFF660VHC/@@download/ENCFF660VHC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF744MVR bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 232592649 ENCODE Processing Pipeline 48c8d44e013cec3c4be56e7431b0e9b6 https://www.encodeproject.org/files/ENCFF744MVR/@@download/ENCFF744MVR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF431TJS bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF083VSQ, ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 449386393 ENCODE Processing Pipeline 7c2e39c74e82eecb305ff01f74a47aad https://www.encodeproject.org/files/ENCFF431TJS/@@download/ENCFF431TJS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF678BIU bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 3364966 ENCODE Processing Pipeline d6c07a3b94a1fe925fb64986b72cb4d2 https://www.encodeproject.org/files/ENCFF678BIU/@@download/ENCFF678BIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF271PVK bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF083VSQ, ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 3911417 ENCODE Processing Pipeline b1a4ae07c6b36e5ead839e85e0b59224 https://www.encodeproject.org/files/ENCFF271PVK/@@download/ENCFF271PVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF434CQV bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 3616303 ENCODE Processing Pipeline dd542aa81f9d46b5460ec319fc70bc21 https://www.encodeproject.org/files/ENCFF434CQV/@@download/ENCFF434CQV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF361EQB bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF678BIU 7211549 ENCODE Processing Pipeline 0d96f62717aae4d63251a7fbefa30dc5 https://www.encodeproject.org/files/ENCFF361EQB/@@download/ENCFF361EQB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF169DMC bed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF271PVK, ENCFF434CQV, ENCFF678BIU 31231 ENCODE Processing Pipeline cc2907c0d39515f81885744191d6045e https://www.encodeproject.org/files/ENCFF169DMC/@@download/ENCFF169DMC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF325FVO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF169DMC 106805 ENCODE Processing Pipeline d9e83ed24c24e686dc4f47a490d0cb23 https://www.encodeproject.org/files/ENCFF325FVO/@@download/ENCFF325FVO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF270ACF bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF434CQV 7579151 ENCODE Processing Pipeline 6defd6974dcec4fe1a01a99e95aabd01 https://www.encodeproject.org/files/ENCFF270ACF/@@download/ENCFF270ACF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF193HBV bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF271PVK 10581897 ENCODE Processing Pipeline fdf699bebcda06b3c3828da902404268 https://www.encodeproject.org/files/ENCFF193HBV/@@download/ENCFF193HBV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF949NJX bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS 218443611 ENCODE Processing Pipeline fcaf30dc1ea4f9870c8ecd96d1b14ec3 https://www.encodeproject.org/files/ENCFF949NJX/@@download/ENCFF949NJX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF652AUB bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF935OOR 71815440 ENCODE Processing Pipeline 8dbf35a6dbfa5ba843ae7c5b1658dc16 https://www.encodeproject.org/files/ENCFF652AUB/@@download/ENCFF652AUB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF499ZRE bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS 3618252 ENCODE Processing Pipeline 0683e0c9383655520f7b34a0fd7f44f4 https://www.encodeproject.org/files/ENCFF499ZRE/@@download/ENCFF499ZRE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF684JML bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS 193884765 ENCODE Processing Pipeline e3500d8ae389886f0912fcd050d2803f https://www.encodeproject.org/files/ENCFF684JML/@@download/ENCFF684JML.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF024POC bigWig signal p-value ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS, ENCFF935OOR 160877690 ENCODE Processing Pipeline b1cd4f0dac0fcde4bfbdcf5d81e46e0f https://www.encodeproject.org/files/ENCFF024POC/@@download/ENCFF024POC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF778TNJ bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF935OOR 231931473 ENCODE Processing Pipeline 4c1a0a8ca257e179022701bdbbc365f3 https://www.encodeproject.org/files/ENCFF778TNJ/@@download/ENCFF778TNJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF294WAI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF719MXF 121630 ENCODE Processing Pipeline 2593e66c49e5510753f19c4b888eaa49 https://www.encodeproject.org/files/ENCFF294WAI/@@download/ENCFF294WAI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF349ZBJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF823NYZ 107832 ENCODE Processing Pipeline 60c3d13ca1eb3acd17dba616d9f43e33 https://www.encodeproject.org/files/ENCFF349ZBJ/@@download/ENCFF349ZBJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF595QZS bigWig fold change over control ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS, ENCFF935OOR 450240031 ENCODE Processing Pipeline 1229aae6480ffffd9b5faee585c3d74c https://www.encodeproject.org/files/ENCFF595QZS/@@download/ENCFF595QZS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF584ANN bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF935OOR 3361947 ENCODE Processing Pipeline 1e1470c900a23965d8e83852a5ed4974 https://www.encodeproject.org/files/ENCFF584ANN/@@download/ENCFF584ANN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF037RJX bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF499ZRE 7582617 ENCODE Processing Pipeline db0db830f65b1c7cde1cfd44c2a051a5 https://www.encodeproject.org/files/ENCFF037RJX/@@download/ENCFF037RJX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF849NNY bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF519GVE, ENCFF710SMS, ENCFF935OOR 3908600 ENCODE Processing Pipeline e2ccbbb6323f854c8c7227d0976deb82 https://www.encodeproject.org/files/ENCFF849NNY/@@download/ENCFF849NNY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF128DMU bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF584ANN 7207078 ENCODE Processing Pipeline 683fdf6215016579b257df7f343016d7 https://www.encodeproject.org/files/ENCFF128DMU/@@download/ENCFF128DMU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF101MRQ bigBed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF849NNY 10586175 ENCODE Processing Pipeline 73171fbcfe9c383dec19149f75588a3c https://www.encodeproject.org/files/ENCFF101MRQ/@@download/ENCFF101MRQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF719MXF bed narrowPeak optimal idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF499ZRE, ENCFF584ANN, ENCFF849NNY 41175 ENCODE Processing Pipeline 8b84ec83c48271bb2b61da7e872c9821 https://www.encodeproject.org/files/ENCFF719MXF/@@download/ENCFF719MXF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF823NYZ bed narrowPeak conservative idr thresholded peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF499ZRE, ENCFF584ANN, ENCFF849NNY 31502 ENCODE Processing Pipeline 92fe103819a4e2b86c7b7dc84b57743f https://www.encodeproject.org/files/ENCFF823NYZ/@@download/ENCFF823NYZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF628HBL fastq reads ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF114TJN 1999991318 Michael Snyder, Stanford a6de6d8678c7e6a794546b3eb1cc842c https://www.encodeproject.org/files/ENCFF628HBL/@@download/ENCFF628HBL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF940DHI fastq reads ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF798AFN 2075293142 Michael Snyder, Stanford 633c97114b2456779dc73e008f647c32 https://www.encodeproject.org/files/ENCFF940DHI/@@download/ENCFF940DHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF114TJN fastq reads ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF628HBL 2031371550 Michael Snyder, Stanford 5425ebe4995373ef19a7c7e7e40b9323 https://www.encodeproject.org/files/ENCFF114TJN/@@download/ENCFF114TJN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF798AFN fastq reads ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF940DHI 2132030081 Michael Snyder, Stanford 1826a40db9a225d6c34c157f323faf0e https://www.encodeproject.org/files/ENCFF798AFN/@@download/ENCFF798AFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF160UAD bam unfiltered alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF798AFN, ENCFF807MUK, ENCFF940DHI 4462009781 ENCODE Processing Pipeline 862b2f6536be39d93045cd38696d66ac https://www.encodeproject.org/files/ENCFF160UAD/@@download/ENCFF160UAD.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF293GOS bam unfiltered alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF114TJN, ENCFF628HBL, ENCFF643CGH 4112332606 ENCODE Processing Pipeline ae2fd0198d71c79a267faed0ad6ee31d https://www.encodeproject.org/files/ENCFF293GOS/@@download/ENCFF293GOS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF967QRJ bam unfiltered alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF798AFN, ENCFF940DHI 4464707174 ENCODE Processing Pipeline 48bfce3f30ef26f385a03b8315d213e4 https://www.encodeproject.org/files/ENCFF967QRJ/@@download/ENCFF967QRJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF620JJK bam unfiltered alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF114TJN, ENCFF628HBL, ENCFF807MUK 4111020886 ENCODE Processing Pipeline 447a768d2bcf7e025054d059f05c0913 https://www.encodeproject.org/files/ENCFF620JJK/@@download/ENCFF620JJK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF196MMQ bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF114TJN, ENCFF628HBL, ENCFF643CGH 2701446100 ENCODE Processing Pipeline 192a51cb47d01fa076639ad11963061f https://www.encodeproject.org/files/ENCFF196MMQ/@@download/ENCFF196MMQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF844VCV bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF114TJN, ENCFF628HBL, ENCFF807MUK 2700404609 ENCODE Processing Pipeline 34f0fef1fa5961d1e8a2d96f85b6d7ff https://www.encodeproject.org/files/ENCFF844VCV/@@download/ENCFF844VCV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF228UIL bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF798AFN, ENCFF940DHI 3410587014 ENCODE Processing Pipeline 65aed075dd2794a8abb688e7d352283c https://www.encodeproject.org/files/ENCFF228UIL/@@download/ENCFF228UIL.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF064POH bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF798AFN, ENCFF807MUK, ENCFF940DHI 3409160303 ENCODE Processing Pipeline 3fdf3a6216b7719dbb18e33cc8269cba https://www.encodeproject.org/files/ENCFF064POH/@@download/ENCFF064POH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF359KRH bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF228UIL 6192376 ENCODE Processing Pipeline dcef7a7502710d623f500f8fe1cfc586 https://www.encodeproject.org/files/ENCFF359KRH/@@download/ENCFF359KRH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF653BTY bigWig fold change over control ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF228UIL 1076469372 ENCODE Processing Pipeline 21f127d6a31eb91fd2e0b4b7b8dff34b https://www.encodeproject.org/files/ENCFF653BTY/@@download/ENCFF653BTY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF452PDH bigWig fold change over control ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF196MMQ, ENCFF227IZS, ENCFF228UIL, ENCFF910IKB 1922590239 ENCODE Processing Pipeline 0869b418cdc94bcbeb5a6505bdd2960e https://www.encodeproject.org/files/ENCFF452PDH/@@download/ENCFF452PDH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF788IWU bigBed narrowPeak conservative idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF474QSX 111097 ENCODE Processing Pipeline 71a73d456770e4d7006f87a5f4cf01e6 https://www.encodeproject.org/files/ENCFF788IWU/@@download/ENCFF788IWU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF215OYX bigWig signal p-value ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF228UIL 1091086934 ENCODE Processing Pipeline 72c1746eadcd25fdfae3142d7aa22e57 https://www.encodeproject.org/files/ENCFF215OYX/@@download/ENCFF215OYX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF913WVP bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF196MMQ, ENCFF227IZS, ENCFF228UIL, ENCFF910IKB 7071799 ENCODE Processing Pipeline 18ef52db7abb2dc09106e3fba5997d6c https://www.encodeproject.org/files/ENCFF913WVP/@@download/ENCFF913WVP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF338CIC bigBed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF359KRH 11090228 ENCODE Processing Pipeline 16df21c3d2eea5863f1e73baf06a54b5 https://www.encodeproject.org/files/ENCFF338CIC/@@download/ENCFF338CIC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF564YVO bigBed narrowPeak optimal idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF315MUH 149018 ENCODE Processing Pipeline 274a866dcf71510cef577e413d5f3d51 https://www.encodeproject.org/files/ENCFF564YVO/@@download/ENCFF564YVO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF350AXL bigWig signal p-value ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF196MMQ, ENCFF910IKB 916631359 ENCODE Processing Pipeline 8f753ab8143672c2276bde5893d86175 https://www.encodeproject.org/files/ENCFF350AXL/@@download/ENCFF350AXL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF106YYE bigBed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF913WVP 13173520 ENCODE Processing Pipeline 7a5e006ea4830c3480927e5434ad4a84 https://www.encodeproject.org/files/ENCFF106YYE/@@download/ENCFF106YYE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF474QSX bed narrowPeak conservative idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF359KRH, ENCFF419RSJ, ENCFF913WVP, ENCFF932WAP 24956 ENCODE Processing Pipeline e5423e4269ae7a3dca53bfd0b7078af8 https://www.encodeproject.org/files/ENCFF474QSX/@@download/ENCFF474QSX.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF084RSA bigWig fold change over control ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF196MMQ, ENCFF910IKB 944135861 ENCODE Processing Pipeline a156d212b8a230d49a3371d3ca7a0863 https://www.encodeproject.org/files/ENCFF084RSA/@@download/ENCFF084RSA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF665JUG bigWig signal p-value ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF196MMQ, ENCFF227IZS, ENCFF228UIL, ENCFF910IKB 1908025952 ENCODE Processing Pipeline 7df7a771ca46d2f023096b35f49679d7 https://www.encodeproject.org/files/ENCFF665JUG/@@download/ENCFF665JUG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF932WAP bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF196MMQ, ENCFF910IKB 6046942 ENCODE Processing Pipeline 2edac0bedb26f5ecee14b9a2f83a74a9 https://www.encodeproject.org/files/ENCFF932WAP/@@download/ENCFF932WAP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF958BSK bigBed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF932WAP 11158756 ENCODE Processing Pipeline f582caa378a3ab4b688c7b29703c5a0d https://www.encodeproject.org/files/ENCFF958BSK/@@download/ENCFF958BSK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF315MUH bed narrowPeak optimal idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF359KRH, ENCFF419RSJ, ENCFF913WVP, ENCFF932WAP 46528 ENCODE Processing Pipeline 5e76f902cc00cb2c1a6d7123b4dbc9d7 https://www.encodeproject.org/files/ENCFF315MUH/@@download/ENCFF315MUH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF401AVG bigWig signal p-value ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF064POH, ENCFF581ZJL, ENCFF844VCV 1821195398 ENCODE Processing Pipeline 90cf67580936a4c720026b9bb1ba4f0d https://www.encodeproject.org/files/ENCFF401AVG/@@download/ENCFF401AVG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF490RDH bigWig fold change over control ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF064POH 1083828472 ENCODE Processing Pipeline 0a628ef4e6fd5db900d257d29ad5b210 https://www.encodeproject.org/files/ENCFF490RDH/@@download/ENCFF490RDH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF155WDG bigBed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF037BJD 11149613 ENCODE Processing Pipeline 1a173ea8e88be44921165d1d17a7dcf2 https://www.encodeproject.org/files/ENCFF155WDG/@@download/ENCFF155WDG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF821VZB bigBed narrowPeak conservative idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF571LPJ 109945 ENCODE Processing Pipeline 86a20797205cc46c52391fe9c3374036 https://www.encodeproject.org/files/ENCFF821VZB/@@download/ENCFF821VZB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF795JVL bigWig fold change over control ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF844VCV 939156079 ENCODE Processing Pipeline 794641b88029bcdc1dc5c24109e41750 https://www.encodeproject.org/files/ENCFF795JVL/@@download/ENCFF795JVL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF793DLG bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF064POH, ENCFF581ZJL, ENCFF844VCV 7070418 ENCODE Processing Pipeline a4930ee85a6863d8332bc694c92ff0a4 https://www.encodeproject.org/files/ENCFF793DLG/@@download/ENCFF793DLG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF863DJF bigWig signal p-value ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF064POH 1007044695 ENCODE Processing Pipeline 36268ff0c4371ffd38de0c4a95631005 https://www.encodeproject.org/files/ENCFF863DJF/@@download/ENCFF863DJF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF697SKV bigBed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF793DLG 13164557 ENCODE Processing Pipeline 63d07c8482294cb95c61292903db0a25 https://www.encodeproject.org/files/ENCFF697SKV/@@download/ENCFF697SKV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF784FIE bed narrowPeak optimal idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF037BJD, ENCFF261TNJ, ENCFF793DLG 46890 ENCODE Processing Pipeline 27585931a99c4d1c463cb076f662bc3b https://www.encodeproject.org/files/ENCFF784FIE/@@download/ENCFF784FIE.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF111HPF bigWig signal p-value ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF844VCV 1051027075 ENCODE Processing Pipeline c5b947be71b280abeedff3b361c511df https://www.encodeproject.org/files/ENCFF111HPF/@@download/ENCFF111HPF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF037BJD bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF844VCV 6046939 ENCODE Processing Pipeline d2b5c4be0b5525b49291ebf01a7449b5 https://www.encodeproject.org/files/ENCFF037BJD/@@download/ENCFF037BJD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF774QKI bigBed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF261TNJ 11077220 ENCODE Processing Pipeline 655fc111cf811029f9960204dc10b136 https://www.encodeproject.org/files/ENCFF774QKI/@@download/ENCFF774QKI.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF571LPJ bed narrowPeak conservative idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF037BJD, ENCFF261TNJ, ENCFF793DLG 25136 ENCODE Processing Pipeline 16588cdb4c659397d5ce189e3b889f14 https://www.encodeproject.org/files/ENCFF571LPJ/@@download/ENCFF571LPJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF720NCF bigWig fold change over control ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF064POH, ENCFF581ZJL, ENCFF844VCV 1925304518 ENCODE Processing Pipeline bfeec79f31a5c120b8bceaec02ae3b24 https://www.encodeproject.org/files/ENCFF720NCF/@@download/ENCFF720NCF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF261TNJ bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF064POH 6196483 ENCODE Processing Pipeline 9671e3446e9e32e48a778781a5077bde https://www.encodeproject.org/files/ENCFF261TNJ/@@download/ENCFF261TNJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF072AAR bigBed narrowPeak optimal idr thresholded peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF784FIE 148892 ENCODE Processing Pipeline e374329e60a622583aaf35f0ce5ae4b0 https://www.encodeproject.org/files/ENCFF072AAR/@@download/ENCFF072AAR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF956NJR fastq reads ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 1 100 paired-ended 2 ENCFF122AVV 2245111387 Michael Snyder, Stanford 36de5b39906846f88e1a451ae285c81e SRA:SRR6213610 https://www.encodeproject.org/files/ENCFF956NJR/@@download/ENCFF956NJR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF122AVV fastq reads ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 1 100 paired-ended 1 ENCFF956NJR 2222379812 Michael Snyder, Stanford 7ac0d43ad423a79a62614e9c1c39c18f SRA:SRR6213610 https://www.encodeproject.org/files/ENCFF122AVV/@@download/ENCFF122AVV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF483YZA fastq reads ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 1 100 paired-ended 1 ENCFF570GLE 2476336422 Michael Snyder, Stanford 05523fdf4e14225fb663229b9b945e3d SRA:SRR6213611 https://www.encodeproject.org/files/ENCFF483YZA/@@download/ENCFF483YZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF570GLE fastq reads ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 1 100 paired-ended 2 ENCFF483YZA 2562027389 Michael Snyder, Stanford 66d780f9f82b5191239a0e4831eb966b SRA:SRR6213611 https://www.encodeproject.org/files/ENCFF570GLE/@@download/ENCFF570GLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF990FAK bam unfiltered alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 100 ENCFF122AVV, ENCFF807MUK, ENCFF956NJR 4914679198 ENCODE Processing Pipeline 238f4060f882cab9865ec1a8a5f5db1a https://www.encodeproject.org/files/ENCFF990FAK/@@download/ENCFF990FAK.bam hg19 released mild to moderate bottlenecking ENCFF799SNH bam unfiltered alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 100 ENCFF483YZA, ENCFF570GLE, ENCFF643CGH 5479273477 ENCODE Processing Pipeline 16b44ba92ee47dcd15cdb5ed535d7a31 https://www.encodeproject.org/files/ENCFF799SNH/@@download/ENCFF799SNH.bam GRCh38 released mild to moderate bottlenecking ENCFF892INQ bam unfiltered alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 100 ENCFF122AVV, ENCFF643CGH, ENCFF956NJR 4919614182 ENCODE Processing Pipeline 898487709e8ddbde48b2d87204f22373 https://www.encodeproject.org/files/ENCFF892INQ/@@download/ENCFF892INQ.bam GRCh38 released mild to moderate bottlenecking ENCFF165XNV bam unfiltered alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 100 ENCFF483YZA, ENCFF570GLE, ENCFF807MUK 5472691142 ENCODE Processing Pipeline 89d24a417982798997a842ee3962646b https://www.encodeproject.org/files/ENCFF165XNV/@@download/ENCFF165XNV.bam hg19 released mild to moderate bottlenecking ENCFF412AMR bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 100 ENCFF483YZA, ENCFF570GLE, ENCFF643CGH 4316226121 ENCODE Processing Pipeline fb882255eab425e333b572f5229a89e6 https://www.encodeproject.org/files/ENCFF412AMR/@@download/ENCFF412AMR.bam GRCh38 released mild to moderate bottlenecking ENCFF410WSQ bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 100 ENCFF122AVV, ENCFF807MUK, ENCFF956NJR 3961577359 ENCODE Processing Pipeline 06d65bebffdc9ad10384322a01b7446b https://www.encodeproject.org/files/ENCFF410WSQ/@@download/ENCFF410WSQ.bam hg19 released mild to moderate bottlenecking ENCFF871PMM bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 100 ENCFF483YZA, ENCFF570GLE, ENCFF807MUK 4314774383 ENCODE Processing Pipeline 50ebc7770f813f20767c95720b6b6614 https://www.encodeproject.org/files/ENCFF871PMM/@@download/ENCFF871PMM.bam hg19 released mild to moderate bottlenecking ENCFF279QAV bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 100 ENCFF122AVV, ENCFF643CGH, ENCFF956NJR 3963029991 ENCODE Processing Pipeline 05daaa4a0a206ecb723912785bd721e2 https://www.encodeproject.org/files/ENCFF279QAV/@@download/ENCFF279QAV.bam GRCh38 released mild to moderate bottlenecking ENCFF254BMS bigWig fold change over control ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF051LWI, ENCFF410WSQ, ENCFF581ZJL, ENCFF871PMM 2113328947 ENCODE Processing Pipeline 2d88fbf61ace69361338bc99d9845e80 https://www.encodeproject.org/files/ENCFF254BMS/@@download/ENCFF254BMS.bigWig hg19 released mild to moderate bottlenecking ENCFF324WHA bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF051LWI, ENCFF871PMM 6577461 ENCODE Processing Pipeline 383eeeeeb7dac3f197aa9d7d9a110d35 https://www.encodeproject.org/files/ENCFF324WHA/@@download/ENCFF324WHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF054BEL bigWig signal p-value ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF051LWI, ENCFF410WSQ, ENCFF581ZJL, ENCFF871PMM 1776022185 ENCODE Processing Pipeline 89d7bba504b88f8cfd925710a633b2f4 https://www.encodeproject.org/files/ENCFF054BEL/@@download/ENCFF054BEL.bigWig hg19 released mild to moderate bottlenecking ENCFF075TGT bigWig fold change over control ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF410WSQ, ENCFF581ZJL 1117052290 ENCODE Processing Pipeline 339c8726c32df8a8c0ee48d994576248 https://www.encodeproject.org/files/ENCFF075TGT/@@download/ENCFF075TGT.bigWig hg19 released mild to moderate bottlenecking ENCFF179EVN bigWig fold change over control ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF051LWI, ENCFF871PMM 1204800370 ENCODE Processing Pipeline 2d9faf1105954d2a236c3ec41f48baab https://www.encodeproject.org/files/ENCFF179EVN/@@download/ENCFF179EVN.bigWig hg19 released mild to moderate bottlenecking ENCFF184RRU bed narrowPeak optimal idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF001TDO, ENCFF324WHA, ENCFF620EBO, ENCFF951XWI 133041 ENCODE Processing Pipeline 3ae96e984e743858b619938ccc58a435 https://www.encodeproject.org/files/ENCFF184RRU/@@download/ENCFF184RRU.bed.gz hg19 released mild to moderate bottlenecking ENCFF357FYW bigWig signal p-value ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF410WSQ, ENCFF581ZJL 1083153619 ENCODE Processing Pipeline 39c7a9231ade19e1df31c72067070137 https://www.encodeproject.org/files/ENCFF357FYW/@@download/ENCFF357FYW.bigWig hg19 released mild to moderate bottlenecking ENCFF113GSW bigWig signal p-value ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF051LWI, ENCFF871PMM 989066393 ENCODE Processing Pipeline 912a54b05bb765510b5ebef03a047901 https://www.encodeproject.org/files/ENCFF113GSW/@@download/ENCFF113GSW.bigWig hg19 released mild to moderate bottlenecking ENCFF620EBO bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF051LWI, ENCFF410WSQ, ENCFF581ZJL, ENCFF871PMM 7219988 ENCODE Processing Pipeline fa21fbdb3f3b508c7eb867947084a66c https://www.encodeproject.org/files/ENCFF620EBO/@@download/ENCFF620EBO.bed.gz hg19 released mild to moderate bottlenecking ENCFF185YRG bed narrowPeak conservative idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF001TDO, ENCFF324WHA, ENCFF620EBO, ENCFF951XWI 82064 ENCODE Processing Pipeline cf50416e276049e1c601d1223794a056 https://www.encodeproject.org/files/ENCFF185YRG/@@download/ENCFF185YRG.bed.gz hg19 released mild to moderate bottlenecking ENCFF203EPM bigBed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF951XWI 13076832 ENCODE Processing Pipeline 3ff06ba70717b96eb846945c95f1c467 https://www.encodeproject.org/files/ENCFF203EPM/@@download/ENCFF203EPM.bigBed hg19 released mild to moderate bottlenecking ENCFF544YEY bigBed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF324WHA 13214723 ENCODE Processing Pipeline df200c4ee0da03b51af3a54ce2899893 https://www.encodeproject.org/files/ENCFF544YEY/@@download/ENCFF544YEY.bigBed hg19 released mild to moderate bottlenecking ENCFF661TCO bigBed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF620EBO 12940735 ENCODE Processing Pipeline ecbc6808dd0055fc54a092972868a8e0 https://www.encodeproject.org/files/ENCFF661TCO/@@download/ENCFF661TCO.bigBed hg19 released mild to moderate bottlenecking ENCFF951XWI bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF410WSQ, ENCFF581ZJL 6612725 ENCODE Processing Pipeline 3524fdf624f98312e8d8eddba86a108e https://www.encodeproject.org/files/ENCFF951XWI/@@download/ENCFF951XWI.bed.gz hg19 released mild to moderate bottlenecking ENCFF798VMO bigBed narrowPeak optimal idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF184RRU 285130 ENCODE Processing Pipeline 8e33a48cf91ee65af0cc23f6139c1a09 https://www.encodeproject.org/files/ENCFF798VMO/@@download/ENCFF798VMO.bigBed hg19 released mild to moderate bottlenecking ENCFF226OHG bigBed narrowPeak conservative idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF185YRG 209785 ENCODE Processing Pipeline 2777687ffe65db2287e6c8f6129fcaa1 https://www.encodeproject.org/files/ENCFF226OHG/@@download/ENCFF226OHG.bigBed hg19 released mild to moderate bottlenecking ENCFF427RXT bigWig fold change over control ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF279QAV, ENCFF910IKB 1125817972 ENCODE Processing Pipeline dd85cf4fbe6525f7ce4262faf5d7a419 https://www.encodeproject.org/files/ENCFF427RXT/@@download/ENCFF427RXT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF545VJW bigWig signal p-value ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF227IZS, ENCFF279QAV, ENCFF412AMR, ENCFF910IKB 1918788883 ENCODE Processing Pipeline 204aaa663bc0b41fdbe5607c4910fc28 https://www.encodeproject.org/files/ENCFF545VJW/@@download/ENCFF545VJW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF082EPO bed narrowPeak optimal idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF157UVM, ENCFF288OGE, ENCFF419RSJ, ENCFF952WBA 128047 ENCODE Processing Pipeline fe01466152fd2e904e47cfeeb6d3c4ab https://www.encodeproject.org/files/ENCFF082EPO/@@download/ENCFF082EPO.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF289VBN bigBed narrowPeak optimal idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF082EPO 278960 ENCODE Processing Pipeline da8bc5b8f20430cbe2bde9aae672ada9 https://www.encodeproject.org/files/ENCFF289VBN/@@download/ENCFF289VBN.bigBed GRCh38 released mild to moderate bottlenecking ENCFF559AMP bigWig signal p-value ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF279QAV, ENCFF910IKB 986628146 ENCODE Processing Pipeline 0d56fa3f401e30b13148103e0c9667ac https://www.encodeproject.org/files/ENCFF559AMP/@@download/ENCFF559AMP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF872QJA bigWig fold change over control ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF227IZS, ENCFF412AMR 1204809444 ENCODE Processing Pipeline c945836245cf8c27c085ce4cc1324e96 https://www.encodeproject.org/files/ENCFF872QJA/@@download/ENCFF872QJA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF843LQG bed narrowPeak conservative idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF157UVM, ENCFF288OGE, ENCFF419RSJ, ENCFF952WBA 81125 ENCODE Processing Pipeline 897d1ff07599932f6b2b0f17a43e5ec4 https://www.encodeproject.org/files/ENCFF843LQG/@@download/ENCFF843LQG.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF273ZXW bigWig fold change over control ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF227IZS, ENCFF279QAV, ENCFF412AMR, ENCFF910IKB 2114794970 ENCODE Processing Pipeline 096dfa3e9213f86877a4a01fbe6b5948 https://www.encodeproject.org/files/ENCFF273ZXW/@@download/ENCFF273ZXW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF952WBA bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF279QAV, ENCFF910IKB 6612457 ENCODE Processing Pipeline bee6b13c31927f6d1442f23ea7465554 https://www.encodeproject.org/files/ENCFF952WBA/@@download/ENCFF952WBA.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF288OGE bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF227IZS, ENCFF279QAV, ENCFF412AMR, ENCFF910IKB 7220077 ENCODE Processing Pipeline 1780a2bf28dc46433b92fb99b0f54d26 https://www.encodeproject.org/files/ENCFF288OGE/@@download/ENCFF288OGE.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF488PZU bigBed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF952WBA 13084386 ENCODE Processing Pipeline 7de6a360093088ddc0a7e82ac1862616 https://www.encodeproject.org/files/ENCFF488PZU/@@download/ENCFF488PZU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF734KIX bigBed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF288OGE 12942911 ENCODE Processing Pipeline ae71de384ae190897947682ba3e00dfb https://www.encodeproject.org/files/ENCFF734KIX/@@download/ENCFF734KIX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF451ONH bigWig signal p-value ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF227IZS, ENCFF412AMR 1162758883 ENCODE Processing Pipeline 400e59283ee38772b07a6fb90e7c9d07 https://www.encodeproject.org/files/ENCFF451ONH/@@download/ENCFF451ONH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF157UVM bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF227IZS, ENCFF412AMR 6579825 ENCODE Processing Pipeline 1062701c365a350285d98dadf536413b https://www.encodeproject.org/files/ENCFF157UVM/@@download/ENCFF157UVM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF176EGG bigBed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF157UVM 13223748 ENCODE Processing Pipeline fd98895625b2fed704c82bc369c383e1 https://www.encodeproject.org/files/ENCFF176EGG/@@download/ENCFF176EGG.bigBed GRCh38 released mild to moderate bottlenecking ENCFF658THP bigBed narrowPeak conservative idr thresholded peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1, 2 ENCFF843LQG 209167 ENCODE Processing Pipeline 8f87ad156a421c9d31b7b91719094dde https://www.encodeproject.org/files/ENCFF658THP/@@download/ENCFF658THP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF045QIG fastq reads ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF871VWH 2518931110 Michael Snyder, Stanford 70786004e3269cdc0a8722280f0353b9 SRA:SRR6212613 https://www.encodeproject.org/files/ENCFF045QIG/@@download/ENCFF045QIG.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released mild to moderate bottlenecking, low read depth ENCFF751XCN fastq reads ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF025AGM 3233584735 Michael Snyder, Stanford a81b1c5d106296df0fe97186f32a8cd9 SRA:SRR6212612 https://www.encodeproject.org/files/ENCFF751XCN/@@download/ENCFF751XCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released mild to moderate bottlenecking, low read depth ENCFF871VWH fastq reads ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF045QIG 2490968169 Michael Snyder, Stanford 34f1938f68fdda5abf1943a25bdcf794 SRA:SRR6212613 https://www.encodeproject.org/files/ENCFF871VWH/@@download/ENCFF871VWH.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released mild to moderate bottlenecking, low read depth ENCFF025AGM fastq reads ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF751XCN 3206457672 Michael Snyder, Stanford e3c4c0e1e19b67f3979339a4021ce28b SRA:SRR6212612 https://www.encodeproject.org/files/ENCFF025AGM/@@download/ENCFF025AGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released mild to moderate bottlenecking, low read depth ENCFF843QAX bam unfiltered alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF045QIG, ENCFF807MUK, ENCFF871VWH 5313744194 ENCODE Processing Pipeline f77871e686e56b91048c05fd13bb78ee https://www.encodeproject.org/files/ENCFF843QAX/@@download/ENCFF843QAX.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF234MFX bam unfiltered alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF045QIG, ENCFF643CGH, ENCFF871VWH 5317250730 ENCODE Processing Pipeline 1dbf6da7c3b8cecafd33fbb1db2ba275 https://www.encodeproject.org/files/ENCFF234MFX/@@download/ENCFF234MFX.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF316YDL bam unfiltered alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF025AGM, ENCFF643CGH, ENCFF751XCN 6874953066 ENCODE Processing Pipeline af3cc20c284407afd20397e024abb25a https://www.encodeproject.org/files/ENCFF316YDL/@@download/ENCFF316YDL.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF963BNH bam unfiltered alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF025AGM, ENCFF751XCN, ENCFF807MUK 6868405320 ENCODE Processing Pipeline 15c953b6f65073a89117790470f41c82 https://www.encodeproject.org/files/ENCFF963BNH/@@download/ENCFF963BNH.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF317UJS bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF045QIG, ENCFF807MUK, ENCFF871VWH 3825961591 ENCODE Processing Pipeline 604f41d0c5388385fed8506147f690d8 https://www.encodeproject.org/files/ENCFF317UJS/@@download/ENCFF317UJS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF431IVA bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF045QIG, ENCFF643CGH, ENCFF871VWH 3827460992 ENCODE Processing Pipeline 7e8c9966fadd7accecffa6b02b53f9ee https://www.encodeproject.org/files/ENCFF431IVA/@@download/ENCFF431IVA.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF798EEI bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF025AGM, ENCFF751XCN, ENCFF807MUK 5431747534 ENCODE Processing Pipeline 8239008e740bc503debbd64791caa238 https://www.encodeproject.org/files/ENCFF798EEI/@@download/ENCFF798EEI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF528YNP bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF025AGM, ENCFF643CGH, ENCFF751XCN 5434843391 ENCODE Processing Pipeline fff37a767a1fb79b386f58b25af5aee0 https://www.encodeproject.org/files/ENCFF528YNP/@@download/ENCFF528YNP.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF933FEZ bigWig fold change over control ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV, ENCFF798EEI 1866352775 ENCODE Processing Pipeline 1ec7f3788c996e2c70bdba0d9dfb8a95 https://www.encodeproject.org/files/ENCFF933FEZ/@@download/ENCFF933FEZ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF676LLC bigBed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF782FAJ 11329292 ENCODE Processing Pipeline b41fc0f7c529354871906a580a2b4eb6 https://www.encodeproject.org/files/ENCFF676LLC/@@download/ENCFF676LLC.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF067PWU bigWig fold change over control ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV 1185580062 ENCODE Processing Pipeline 887ce0b4e447b025ab15db44a8978ed2 https://www.encodeproject.org/files/ENCFF067PWU/@@download/ENCFF067PWU.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF663RBZ bigWig signal p-value ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV 1079922095 ENCODE Processing Pipeline edd10edae1015839ac54ad86c9108042 https://www.encodeproject.org/files/ENCFF663RBZ/@@download/ENCFF663RBZ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF112BTF bigWig signal p-value ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV, ENCFF798EEI 1393067419 ENCODE Processing Pipeline 9fae0814cba0adb2bbc5ef5ecce90c88 https://www.encodeproject.org/files/ENCFF112BTF/@@download/ENCFF112BTF.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF255VCC bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV 6398990 ENCODE Processing Pipeline 7344145cc93f4211f897581fcc9e10b5 https://www.encodeproject.org/files/ENCFF255VCC/@@download/ENCFF255VCC.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF637AOG bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV, ENCFF798EEI 7098911 ENCODE Processing Pipeline caba2045016146600bf29e2bf717b043 https://www.encodeproject.org/files/ENCFF637AOG/@@download/ENCFF637AOG.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF896IJF bigWig signal p-value ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF798EEI 1385909794 ENCODE Processing Pipeline e3d83611a51340ad48ee466952065c11 https://www.encodeproject.org/files/ENCFF896IJF/@@download/ENCFF896IJF.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF411SYE bigBed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF637AOG 13512841 ENCODE Processing Pipeline ca98135ae64a9b66808905e854095226 https://www.encodeproject.org/files/ENCFF411SYE/@@download/ENCFF411SYE.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF630ANY bed narrowPeak conservative idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF255VCC, ENCFF637AOG, ENCFF782FAJ 577972 ENCODE Processing Pipeline 3a4fb10afba9a22ae5d5997086f825d4 https://www.encodeproject.org/files/ENCFF630ANY/@@download/ENCFF630ANY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF223GMK bigBed narrowPeak optimal idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF558JBX 1230942 ENCODE Processing Pipeline 6c222c59e1d71c4f7a79527806f6bc68 https://www.encodeproject.org/files/ENCFF223GMK/@@download/ENCFF223GMK.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF135LDI bigWig fold change over control ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF798EEI 1446664033 ENCODE Processing Pipeline b51bc188b6d34a86c839cc434f8f4424 https://www.encodeproject.org/files/ENCFF135LDI/@@download/ENCFF135LDI.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF782FAJ bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF798EEI 6792822 ENCODE Processing Pipeline 7f92a2c22d03cbc0d8ef279014a1724a https://www.encodeproject.org/files/ENCFF782FAJ/@@download/ENCFF782FAJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF014WJN bigBed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF255VCC 11380342 ENCODE Processing Pipeline b195debe8b18a0645eaef7a4263a4758 https://www.encodeproject.org/files/ENCFF014WJN/@@download/ENCFF014WJN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF890AJQ bigBed narrowPeak conservative idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF630ANY 1185740 ENCODE Processing Pipeline 9da4907b2b630b6e446cf71d4e0a3e64 https://www.encodeproject.org/files/ENCFF890AJQ/@@download/ENCFF890AJQ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF558JBX bed narrowPeak optimal idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF255VCC, ENCFF637AOG, ENCFF782FAJ 605717 ENCODE Processing Pipeline 8149a5a796a465fc5a678edf965522ce https://www.encodeproject.org/files/ENCFF558JBX/@@download/ENCFF558JBX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF167LGY bigWig fold change over control ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF528YNP, ENCFF720AUK, ENCFF796JTX 1450286213 ENCODE Processing Pipeline 856b20b4748294aaed8f1b2e0f97c925 https://www.encodeproject.org/files/ENCFF167LGY/@@download/ENCFF167LGY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF932FUX bigWig signal p-value ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF431IVA, ENCFF528YNP, ENCFF720AUK, ENCFF796JTX 1416281837 ENCODE Processing Pipeline 88f3e9bb6cc138fb8a0c3cab57018e32 https://www.encodeproject.org/files/ENCFF932FUX/@@download/ENCFF932FUX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF485OEN bigWig fold change over control ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF431IVA, ENCFF720AUK, ENCFF796JTX 1146846394 ENCODE Processing Pipeline 5d2a911d2286c928b6f8a79a64bf28a2 https://www.encodeproject.org/files/ENCFF485OEN/@@download/ENCFF485OEN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF871YTG bigBed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF814LDV 11348207 ENCODE Processing Pipeline 26b2e45c1ae896a044c21ad122f114ce https://www.encodeproject.org/files/ENCFF871YTG/@@download/ENCFF871YTG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF575BNN bigWig signal p-value ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF528YNP, ENCFF720AUK, ENCFF796JTX 1229412439 ENCODE Processing Pipeline c5c73f14a88954c48624a58c007480d2 https://www.encodeproject.org/files/ENCFF575BNN/@@download/ENCFF575BNN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF845DTJ bigBed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF376ISK 11398298 ENCODE Processing Pipeline c3e4a5ad61ed7a58a118feb812546819 https://www.encodeproject.org/files/ENCFF845DTJ/@@download/ENCFF845DTJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF217RUI bigWig signal p-value ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF431IVA, ENCFF720AUK, ENCFF796JTX 1222894562 ENCODE Processing Pipeline 39b177bfc42e385f7085d8f6ad4f289e https://www.encodeproject.org/files/ENCFF217RUI/@@download/ENCFF217RUI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF814LDV bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF528YNP, ENCFF720AUK, ENCFF796JTX 6797464 ENCODE Processing Pipeline 506d16629923a10009f1025d9de08fbc https://www.encodeproject.org/files/ENCFF814LDV/@@download/ENCFF814LDV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF376ISK bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF431IVA, ENCFF720AUK, ENCFF796JTX 6400103 ENCODE Processing Pipeline 68123bed7a4e5bc437fe0b53ae291606 https://www.encodeproject.org/files/ENCFF376ISK/@@download/ENCFF376ISK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF878QFY bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF431IVA, ENCFF528YNP, ENCFF720AUK, ENCFF796JTX 7106807 ENCODE Processing Pipeline a2422f8956f895a40bb184909b115d9e https://www.encodeproject.org/files/ENCFF878QFY/@@download/ENCFF878QFY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF175VSS bed narrowPeak optimal idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF376ISK, ENCFF419RSJ, ENCFF814LDV, ENCFF878QFY 612592 ENCODE Processing Pipeline 03ac720f9a6b30e8673da2c16d9bcc3f https://www.encodeproject.org/files/ENCFF175VSS/@@download/ENCFF175VSS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF559WKE bigWig fold change over control ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF431IVA, ENCFF528YNP, ENCFF720AUK, ENCFF796JTX 1868238134 ENCODE Processing Pipeline f912e562be2e6dbe22f2ab80816109d9 https://www.encodeproject.org/files/ENCFF559WKE/@@download/ENCFF559WKE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF522KCK bed narrowPeak conservative idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF376ISK, ENCFF419RSJ, ENCFF814LDV, ENCFF878QFY 578663 ENCODE Processing Pipeline 65318674069e4073deeaa02b3ea1c265 https://www.encodeproject.org/files/ENCFF522KCK/@@download/ENCFF522KCK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF189MJH bigBed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF878QFY 13532324 ENCODE Processing Pipeline cc7d8e8bcf813e59f85eb7ef19952323 https://www.encodeproject.org/files/ENCFF189MJH/@@download/ENCFF189MJH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF379XNG bigBed narrowPeak optimal idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF175VSS 1243941 ENCODE Processing Pipeline 2271aae50a05c8da88968a55560be59f https://www.encodeproject.org/files/ENCFF379XNG/@@download/ENCFF379XNG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF885XER bigBed narrowPeak conservative idr thresholded peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF522KCK 1189603 ENCODE Processing Pipeline b94a901218cafecbd9ad29b638878e13 https://www.encodeproject.org/files/ENCFF885XER/@@download/ENCFF885XER.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF000OPG bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OPS 910562513 Richard Myers, HAIB a7397181415c5b37dfa8546f107ab574 https://www.encodeproject.org/files/ENCFF000OPG/@@download/ENCFF000OPG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPH bigBed broadPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBM 131785 Richard Myers, HAIB 773cfa60d71f1cb1a58b6d4ba0c4330d https://www.encodeproject.org/files/ENCFF000OPH/@@download/ENCFF000OPH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPI bigBed broadPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBN 493825 Richard Myers, HAIB 39d78b4ea7cc1110b33214014c8be8db https://www.encodeproject.org/files/ENCFF000OPI/@@download/ENCFF000OPI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPJ bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OPZ 1898667075 Richard Myers, HAIB 78e0d592667a8ebfd527a3998ed14b2b https://www.encodeproject.org/files/ENCFF000OPJ/@@download/ENCFF000OPJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPM bigWig raw signal ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 5129675 Richard Myers, HAIB d4bad746848e26f8ca400019a57018ca https://www.encodeproject.org/files/ENCFF000OPM/@@download/ENCFF000OPM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPN bigWig raw signal ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 68193619 Richard Myers, HAIB 16882f188b2dfaee8422685946ef518c https://www.encodeproject.org/files/ENCFF000OPN/@@download/ENCFF000OPN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPS fastq reads ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 786300290 Richard Myers, HAIB a332549fbaa94bf298fd8f4445d6cbcd https://www.encodeproject.org/files/ENCFF000OPS/@@download/ENCFF000OPS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF000OPZ fastq reads ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2697949103 Richard Myers, HAIB 56a854f4f63d5ab5c7ad6fd69c5eacbe https://www.encodeproject.org/files/ENCFF000OPZ/@@download/ENCFF000OPZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF001UBM bed broadPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 63066 Richard Myers, HAIB 96484467e93183df045a4abd545ff9c7 https://www.encodeproject.org/files/ENCFF001UBM/@@download/ENCFF001UBM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF001UBN bed broadPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 317584 Richard Myers, HAIB 8f228409b2c861f5cf0d2e52bc88178c https://www.encodeproject.org/files/ENCFF001UBN/@@download/ENCFF001UBN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking ENCFF002CIZ bed narrowPeak optimal idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 164218 ENCODE Consortium Analysis Working Group 1c0e5f009a39b207e74f525bcfd58e35 https://www.encodeproject.org/files/ENCFF002CIZ/@@download/ENCFF002CIZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF872ZQO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIZ 383526 ENCODE Consortium 7a462c665dc598052e99097bf4e9179c https://www.encodeproject.org/files/ENCFF872ZQO/@@download/ENCFF872ZQO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF719SSA bam unfiltered alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPS, ENCFF643CGH 1072718963 ENCODE Processing Pipeline 16a303e914f2cfaf43c29823b0bcf517 https://www.encodeproject.org/files/ENCFF719SSA/@@download/ENCFF719SSA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF015LMA bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPS, ENCFF643CGH 657514861 ENCODE Processing Pipeline 1a2bd6471c41754adc152c46bf5d3c52 https://www.encodeproject.org/files/ENCFF015LMA/@@download/ENCFF015LMA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF889YQP bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPZ, ENCFF643CGH 735950096 ENCODE Processing Pipeline fc9f745b455a47e651e706655f20794e https://www.encodeproject.org/files/ENCFF889YQP/@@download/ENCFF889YQP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF253UUS bam unfiltered alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPZ, ENCFF643CGH 3032859040 ENCODE Processing Pipeline 1c43004c8b2fe58c8b309d8fa02494f1 https://www.encodeproject.org/files/ENCFF253UUS/@@download/ENCFF253UUS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF607MKO bam unfiltered alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPS, ENCFF807MUK 1068738329 ENCODE Processing Pipeline b38ae91be221ca6adaba737c7c02a147 https://www.encodeproject.org/files/ENCFF607MKO/@@download/ENCFF607MKO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF255PIM bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPS, ENCFF807MUK 657938634 ENCODE Processing Pipeline dd979bff0c28be79c1c75eac4c244284 https://www.encodeproject.org/files/ENCFF255PIM/@@download/ENCFF255PIM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF751AJC bam unfiltered alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPZ, ENCFF807MUK 3025900466 ENCODE Processing Pipeline f997cfc9de0288995cba17cf2fd65134 https://www.encodeproject.org/files/ENCFF751AJC/@@download/ENCFF751AJC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF694EPR bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPZ, ENCFF807MUK 736479403 ENCODE Processing Pipeline 0382220721ed84cc609fe8a2adbc0731 https://www.encodeproject.org/files/ENCFF694EPR/@@download/ENCFF694EPR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF080RXO bigWig signal p-value ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LMA, ENCFF948LKH 430776982 ENCODE Processing Pipeline 1e1a0618a17e0548d209da8fb1167525 https://www.encodeproject.org/files/ENCFF080RXO/@@download/ENCFF080RXO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF133IVX bigWig signal p-value ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF889YQP, ENCFF948LKH 437831846 ENCODE Processing Pipeline f6d8962432c7c66b670bbf536dbe8a05 https://www.encodeproject.org/files/ENCFF133IVX/@@download/ENCFF133IVX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF540SHL bigWig signal p-value ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015LMA, ENCFF889YQP, ENCFF948LKH 541982920 ENCODE Processing Pipeline 55f93e09700e7194a7ddd1d5813cddd1 https://www.encodeproject.org/files/ENCFF540SHL/@@download/ENCFF540SHL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF655OWT bigWig fold change over control ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LMA, ENCFF948LKH 365440862 ENCODE Processing Pipeline c232a79bdafb51140eda33163eb5d48e https://www.encodeproject.org/files/ENCFF655OWT/@@download/ENCFF655OWT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF790OJE bigWig fold change over control ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF889YQP, ENCFF948LKH 304860525 ENCODE Processing Pipeline 9a7fc8e34138b78104b6ef6baeee5386 https://www.encodeproject.org/files/ENCFF790OJE/@@download/ENCFF790OJE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF128BVN bigWig fold change over control ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015LMA, ENCFF889YQP, ENCFF948LKH 575967083 ENCODE Processing Pipeline fa8b1b7122ec2a9da8f8b5c3fd06277a https://www.encodeproject.org/files/ENCFF128BVN/@@download/ENCFF128BVN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF497ZVG bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF889YQP, ENCFF948LKH 4628032 ENCODE Processing Pipeline b8f21a894d1064e6aa8e4bc737fa2af6 https://www.encodeproject.org/files/ENCFF497ZVG/@@download/ENCFF497ZVG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF476DXW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF093TYW 308696 ENCODE Processing Pipeline 6c37fe66a3c62133ff8a69a8b8fe4d9e https://www.encodeproject.org/files/ENCFF476DXW/@@download/ENCFF476DXW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF017EIV bigBed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF053GZV 8567593 ENCODE Processing Pipeline 17d1920f5b0f4939f9e3af960461ce5f https://www.encodeproject.org/files/ENCFF017EIV/@@download/ENCFF017EIV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF060XJS bigBed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122MRV 11383074 ENCODE Processing Pipeline a8a3cdac3a9f440a9cc463f9890486d5 https://www.encodeproject.org/files/ENCFF060XJS/@@download/ENCFF060XJS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF093TYW bed narrowPeak conservative idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF053GZV, ENCFF122MRV, ENCFF419RSJ, ENCFF497ZVG 161042 ENCODE Processing Pipeline 4af9ae6bdc9ff79c8cbd33f11546c66a https://www.encodeproject.org/files/ENCFF093TYW/@@download/ENCFF093TYW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF050FWD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF646IUA 505475 ENCODE Processing Pipeline 4958edcdece8527eb343ec38e4356cb7 https://www.encodeproject.org/files/ENCFF050FWD/@@download/ENCFF050FWD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF122MRV bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015LMA, ENCFF889YQP, ENCFF948LKH 5268168 ENCODE Processing Pipeline 706ee13ee1072e1370d84e17824754f1 https://www.encodeproject.org/files/ENCFF122MRV/@@download/ENCFF122MRV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF646IUA bed narrowPeak optimal idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF053GZV, ENCFF122MRV, ENCFF419RSJ, ENCFF497ZVG 248403 ENCODE Processing Pipeline 4e5987a810e7796cf5e42c219da30108 https://www.encodeproject.org/files/ENCFF646IUA/@@download/ENCFF646IUA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF053GZV bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LMA, ENCFF948LKH 4033523 ENCODE Processing Pipeline 0ad1fcdc31b3884215a80c9e3e6bab82 https://www.encodeproject.org/files/ENCFF053GZV/@@download/ENCFF053GZV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF851RMZ bigBed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF497ZVG 10762475 ENCODE Processing Pipeline e38def96e12d055baed45cae03ff087d https://www.encodeproject.org/files/ENCFF851RMZ/@@download/ENCFF851RMZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF558CUU bigWig fold change over control ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF694EPR 307983736 ENCODE Processing Pipeline 8c9a2170465274d87c8b6ed0a55bce83 https://www.encodeproject.org/files/ENCFF558CUU/@@download/ENCFF558CUU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF072NXZ bigWig signal p-value ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF255PIM, ENCFF356DXM 469131492 ENCODE Processing Pipeline 67a5c57e395cdf157dbf9f7c56a0e7d8 https://www.encodeproject.org/files/ENCFF072NXZ/@@download/ENCFF072NXZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF575JCN bigWig fold change over control ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255PIM, ENCFF356DXM, ENCFF694EPR 588720130 ENCODE Processing Pipeline c3d47af0ce764338648f939bf46c4284 https://www.encodeproject.org/files/ENCFF575JCN/@@download/ENCFF575JCN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF686SJD bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF255PIM, ENCFF356DXM 4137913 ENCODE Processing Pipeline e03796a634f2dca9d97626146b10d083 https://www.encodeproject.org/files/ENCFF686SJD/@@download/ENCFF686SJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF808AGO bigBed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF905FMJ 10759871 ENCODE Processing Pipeline 5dbd66f10e3802a102c90215d5df040d https://www.encodeproject.org/files/ENCFF808AGO/@@download/ENCFF808AGO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF959ZEX bigWig fold change over control ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF255PIM, ENCFF356DXM 362010222 ENCODE Processing Pipeline 2b3852266b20086f97d6ca551b016f1e https://www.encodeproject.org/files/ENCFF959ZEX/@@download/ENCFF959ZEX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF871SXX bigWig signal p-value ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF694EPR 427174005 ENCODE Processing Pipeline 1b4e19e5f21ff063ff4afc52c2dd84c3 https://www.encodeproject.org/files/ENCFF871SXX/@@download/ENCFF871SXX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF331LHC bigBed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041GFP 11376078 ENCODE Processing Pipeline 46cb25fe4ac557e132812fecdd86e3f8 https://www.encodeproject.org/files/ENCFF331LHC/@@download/ENCFF331LHC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF250TYY bigWig signal p-value ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255PIM, ENCFF356DXM, ENCFF694EPR 553137019 ENCODE Processing Pipeline ba4ea31fa4a006c7d5e9d616a81486f2 https://www.encodeproject.org/files/ENCFF250TYY/@@download/ENCFF250TYY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF905FMJ bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF694EPR 4633715 ENCODE Processing Pipeline e9b1b628efd91bd2cf068be3eab1e568 https://www.encodeproject.org/files/ENCFF905FMJ/@@download/ENCFF905FMJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF041GFP bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255PIM, ENCFF356DXM, ENCFF694EPR 5330461 ENCODE Processing Pipeline b6d79920d44df8b205ce83dfb88332f8 https://www.encodeproject.org/files/ENCFF041GFP/@@download/ENCFF041GFP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF791JCL bigBed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF686SJD 10553010 ENCODE Processing Pipeline 194e60121b6a9bd23c96470c1780fd27 https://www.encodeproject.org/files/ENCFF791JCL/@@download/ENCFF791JCL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF073PCP bed narrowPeak optimal idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF041GFP, ENCFF686SJD, ENCFF905FMJ 258230 ENCODE Processing Pipeline 009fcd86b3b4d6d1e42350f2b7f87273 https://www.encodeproject.org/files/ENCFF073PCP/@@download/ENCFF073PCP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF137OPQ bed narrowPeak conservative idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF041GFP, ENCFF686SJD, ENCFF905FMJ 162224 ENCODE Processing Pipeline d24812c3c1aabacaa473b058a79d058c https://www.encodeproject.org/files/ENCFF137OPQ/@@download/ENCFF137OPQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF843TQG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF137OPQ 301820 ENCODE Processing Pipeline 1a90dd33095fdfcab9c8ec83e06a003e https://www.encodeproject.org/files/ENCFF843TQG/@@download/ENCFF843TQG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF215HQZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF073PCP 510330 ENCODE Processing Pipeline 3d2d5179567a43860315213d4aa0275c https://www.encodeproject.org/files/ENCFF215HQZ/@@download/ENCFF215HQZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF478FFG fastq reads ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF438UOR 2504668165 Michael Snyder, Stanford 371320d2e7235279a4c61aa17dafb0d8 SRA:SRR6213989 https://www.encodeproject.org/files/ENCFF478FFG/@@download/ENCFF478FFG.fastq.gz Illumina HiSeq 4000 /files/ENCFF539NMO/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF438UOR fastq reads ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF478FFG 2327721140 Michael Snyder, Stanford 7ccacf28bc888bd3ad2526753cc684dd SRA:SRR6213989 https://www.encodeproject.org/files/ENCFF438UOR/@@download/ENCFF438UOR.fastq.gz Illumina HiSeq 4000 /files/ENCFF011TZG/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF645UNK bam unfiltered alignments ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF438UOR, ENCFF478FFG, ENCFF643CGH 4424471187 ENCODE Processing Pipeline ebfcace07aff6c2f356e9985fae1c84a https://www.encodeproject.org/files/ENCFF645UNK/@@download/ENCFF645UNK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF224XOE bam alignments ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF438UOR, ENCFF478FFG, ENCFF807MUK 2700946960 ENCODE Processing Pipeline 3b723b43f68d05d0bdd1ab5f20d24f86 https://www.encodeproject.org/files/ENCFF224XOE/@@download/ENCFF224XOE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF468STG bam unfiltered alignments ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF438UOR, ENCFF478FFG, ENCFF807MUK 4423235746 ENCODE Processing Pipeline fa9a4e82264e7329e03bdbb99a4d9ae6 https://www.encodeproject.org/files/ENCFF468STG/@@download/ENCFF468STG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF165JXX bam alignments ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF438UOR, ENCFF478FFG, ENCFF643CGH 2705039537 ENCODE Processing Pipeline 0f104bf4833d3ff131556ef76cb7e706 https://www.encodeproject.org/files/ENCFF165JXX/@@download/ENCFF165JXX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF504FGB bigBed narrowPeak peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF161OVA 11587684 ENCODE Processing Pipeline 85240075133acd888247737ebf6fb3cf https://www.encodeproject.org/files/ENCFF504FGB/@@download/ENCFF504FGB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF629UTX bigWig signal p-value ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF224XOE, ENCFF580MDV 1120676089 ENCODE Processing Pipeline 8b404c8aecb83b4fd03ef1166bde34a4 https://www.encodeproject.org/files/ENCFF629UTX/@@download/ENCFF629UTX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF737IOU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF161OVA 178121 ENCODE Processing Pipeline 1195688d9f4412917d03c42e028c447d https://www.encodeproject.org/files/ENCFF737IOU/@@download/ENCFF737IOU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF826GPP bigWig fold change over control ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF224XOE, ENCFF580MDV 1099914727 ENCODE Processing Pipeline 4966f9ba100542a42f1da0b3fe9516ee https://www.encodeproject.org/files/ENCFF826GPP/@@download/ENCFF826GPP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF161OVA bed narrowPeak peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF224XOE, ENCFF580MDV 5601291 ENCODE Processing Pipeline a1aebb2fe4b1b0df7c6246ff207a535a https://www.encodeproject.org/files/ENCFF161OVA/@@download/ENCFF161OVA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF485FTA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF737IOU 376863 ENCODE Processing Pipeline 7144944cabd6bdd3a24f97a42f115209 https://www.encodeproject.org/files/ENCFF485FTA/@@download/ENCFF485FTA.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF381FGK bigWig signal p-value ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF015PXS, ENCFF165JXX 1103785718 ENCODE Processing Pipeline eb133a8f6bd3069e4552c3b76fc4c194 https://www.encodeproject.org/files/ENCFF381FGK/@@download/ENCFF381FGK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF906CSG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF419RSJ, ENCFF894RYL 171809 ENCODE Processing Pipeline 598911fb4b280286f77489eed0249ece https://www.encodeproject.org/files/ENCFF906CSG/@@download/ENCFF906CSG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF039XEZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF906CSG 371935 ENCODE Processing Pipeline 91ac705be1b8349aa82fd6c163a80c20 https://www.encodeproject.org/files/ENCFF039XEZ/@@download/ENCFF039XEZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF561TVM bigWig fold change over control ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF015PXS, ENCFF165JXX 1093209844 ENCODE Processing Pipeline 4e81b8b50b10a21f019a6c91024bf66b https://www.encodeproject.org/files/ENCFF561TVM/@@download/ENCFF561TVM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF894RYL bed narrowPeak peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF015PXS, ENCFF165JXX 5588764 ENCODE Processing Pipeline 847a1064cd70d5b880ce4173b403cc26 https://www.encodeproject.org/files/ENCFF894RYL/@@download/ENCFF894RYL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF910SGJ bigBed narrowPeak peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF894RYL 11593222 ENCODE Processing Pipeline a2dafe063d8af4d5fa1ea2d8b889eaef https://www.encodeproject.org/files/ENCFF910SGJ/@@download/ENCFF910SGJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF735ESZ fastq reads ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF585TRE 2484681393 Michael Snyder, Stanford 5d84934cf4f951e6b943d9087f2df038 SRA:SRR5111057 https://www.encodeproject.org/files/ENCFF735ESZ/@@download/ENCFF735ESZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF327EZT fastq reads ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF534JQE 2334182905 Michael Snyder, Stanford ff49ca1115204efb32a17a9b430230fd SRA:SRR5111056 https://www.encodeproject.org/files/ENCFF327EZT/@@download/ENCFF327EZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF585TRE fastq reads ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF735ESZ 2564999772 Michael Snyder, Stanford 77cd4dd2a3d4edb46dc74c9028859d17 SRA:SRR5111057 https://www.encodeproject.org/files/ENCFF585TRE/@@download/ENCFF585TRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF534JQE fastq reads ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF327EZT 2406555930 Michael Snyder, Stanford 5df79c2e0183b2916bcf75c0444e842b SRA:SRR5111056 https://www.encodeproject.org/files/ENCFF534JQE/@@download/ENCFF534JQE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF491VLZ bam unfiltered alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF585TRE, ENCFF735ESZ, ENCFF807MUK 5548108574 ENCODE Processing Pipeline 6eae9c689540b346e4ccd2429d15da74 https://www.encodeproject.org/files/ENCFF491VLZ/@@download/ENCFF491VLZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF318EKH bam unfiltered alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF327EZT, ENCFF534JQE, ENCFF807MUK 5214688311 ENCODE Processing Pipeline b094fcc35de583392661e729589e9ce3 https://www.encodeproject.org/files/ENCFF318EKH/@@download/ENCFF318EKH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF058FMP bam unfiltered alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF585TRE, ENCFF643CGH, ENCFF735ESZ 5553976838 ENCODE Processing Pipeline 7ef51a38213f04d1c2d3b032ec5e0729 https://www.encodeproject.org/files/ENCFF058FMP/@@download/ENCFF058FMP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF441IVF bam unfiltered alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF327EZT, ENCFF534JQE, ENCFF643CGH 5219237174 ENCODE Processing Pipeline 2e1ba027c7f9a8c8bd1870f8ba5deae1 https://www.encodeproject.org/files/ENCFF441IVF/@@download/ENCFF441IVF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF745ITX bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF327EZT, ENCFF534JQE, ENCFF807MUK 4288264985 ENCODE Processing Pipeline e3caa800046da0c390dc492e11fcba4a https://www.encodeproject.org/files/ENCFF745ITX/@@download/ENCFF745ITX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF575OIR bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF585TRE, ENCFF735ESZ, ENCFF807MUK 4627741811 ENCODE Processing Pipeline bd43df6bf2d4216ac6fa5f4c18548dda https://www.encodeproject.org/files/ENCFF575OIR/@@download/ENCFF575OIR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF893VEW bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF585TRE, ENCFF643CGH, ENCFF735ESZ 4628095792 ENCODE Processing Pipeline d1a16533a821ab592130b5e79ebd40ff https://www.encodeproject.org/files/ENCFF893VEW/@@download/ENCFF893VEW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF780ZCG bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF327EZT, ENCFF534JQE, ENCFF643CGH 4288702222 ENCODE Processing Pipeline 43b1ccf04b58809ff233361c3039d874 https://www.encodeproject.org/files/ENCFF780ZCG/@@download/ENCFF780ZCG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF592OHJ bigWig signal p-value ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF575OIR 1210793549 ENCODE Processing Pipeline b2c816d23cd48c71e22978038e409483 https://www.encodeproject.org/files/ENCFF592OHJ/@@download/ENCFF592OHJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF252MQN bigWig signal p-value ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF745ITX 1289207719 ENCODE Processing Pipeline 7a6677e703706838c7d3d2525fda032c https://www.encodeproject.org/files/ENCFF252MQN/@@download/ENCFF252MQN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF531NHI bigWig signal p-value ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF575OIR, ENCFF745ITX 1563655973 ENCODE Processing Pipeline f78cd229be5dfa93b89c332ae7f129e2 https://www.encodeproject.org/files/ENCFF531NHI/@@download/ENCFF531NHI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF106NQB bigWig fold change over control ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF575OIR 1444431313 ENCODE Processing Pipeline da128e7b28c70606caca60844aecb322 https://www.encodeproject.org/files/ENCFF106NQB/@@download/ENCFF106NQB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF587SDM bigWig fold change over control ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF745ITX 1400720480 ENCODE Processing Pipeline 4f87bb35e3956709346969678982e477 https://www.encodeproject.org/files/ENCFF587SDM/@@download/ENCFF587SDM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF409XLD bigWig fold change over control ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF575OIR, ENCFF745ITX 1977711664 ENCODE Processing Pipeline 4a5933b146d3a3f0e90f48b03bfed16b https://www.encodeproject.org/files/ENCFF409XLD/@@download/ENCFF409XLD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF625RGX bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF575OIR 6909123 ENCODE Processing Pipeline 4ef575d458a3633ae49387145fdc0d3d https://www.encodeproject.org/files/ENCFF625RGX/@@download/ENCFF625RGX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF824LLG bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF745ITX 6799416 ENCODE Processing Pipeline 92709d3ef9352e7d58cbb00452eef80f https://www.encodeproject.org/files/ENCFF824LLG/@@download/ENCFF824LLG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF907ZCD bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF575OIR, ENCFF745ITX 7192842 ENCODE Processing Pipeline 6b0d118f21a2dc4cd86a12bc2106348d https://www.encodeproject.org/files/ENCFF907ZCD/@@download/ENCFF907ZCD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF240JNX bigBed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF625RGX 13448825 ENCODE Processing Pipeline 3aa280bfea8e27bc7865b05e68ed13e1 https://www.encodeproject.org/files/ENCFF240JNX/@@download/ENCFF240JNX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF383JQZ bigBed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF824LLG 13481550 ENCODE Processing Pipeline a85f45cee48c0b82a7999d5d29401c67 https://www.encodeproject.org/files/ENCFF383JQZ/@@download/ENCFF383JQZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF568LOV bigBed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF907ZCD 13321707 ENCODE Processing Pipeline 15dddb011300809889a0f6f5fec32a1c https://www.encodeproject.org/files/ENCFF568LOV/@@download/ENCFF568LOV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF010QHU bed narrowPeak conservative idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF625RGX, ENCFF824LLG, ENCFF907ZCD 256162 ENCODE Processing Pipeline 1a2a9e4472c20e48b6bd401a5d872427 https://www.encodeproject.org/files/ENCFF010QHU/@@download/ENCFF010QHU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF574VPX bigBed narrowPeak conservative idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF010QHU 537326 ENCODE Processing Pipeline b79f9de061d3cb2e32bb0e7d9d223f95 https://www.encodeproject.org/files/ENCFF574VPX/@@download/ENCFF574VPX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF572DQF bed narrowPeak optimal idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF625RGX, ENCFF824LLG, ENCFF907ZCD 265859 ENCODE Processing Pipeline 37d603e6d679fdb2bc9c6a984d07d2ac https://www.encodeproject.org/files/ENCFF572DQF/@@download/ENCFF572DQF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF444NZV bigBed narrowPeak optimal idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF572DQF 551589 ENCODE Processing Pipeline f986b025e6c60675538636fbc860d69e https://www.encodeproject.org/files/ENCFF444NZV/@@download/ENCFF444NZV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF562WSQ bigWig signal p-value ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF780ZCG 1250058426 ENCODE Processing Pipeline 20efbea0fa035095f4c49843dda2e744 https://www.encodeproject.org/files/ENCFF562WSQ/@@download/ENCFF562WSQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF906CGD bigWig signal p-value ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF780ZCG, ENCFF893VEW 1864448579 ENCODE Processing Pipeline e0c64e725c290736209f76977c2a002e https://www.encodeproject.org/files/ENCFF906CGD/@@download/ENCFF906CGD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF629LYQ bigWig signal p-value ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF893VEW 1202517782 ENCODE Processing Pipeline 2f4d3ade500335f841f96c37caf7bb33 https://www.encodeproject.org/files/ENCFF629LYQ/@@download/ENCFF629LYQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF741JWI bigWig fold change over control ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF780ZCG, ENCFF893VEW 1978318166 ENCODE Processing Pipeline b486f5d72f3f8d0643b2c50b5e4ebb22 https://www.encodeproject.org/files/ENCFF741JWI/@@download/ENCFF741JWI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF813HXE bigWig fold change over control ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF780ZCG 1388731560 ENCODE Processing Pipeline 290d8bdf088fea063327a3dda3158b96 https://www.encodeproject.org/files/ENCFF813HXE/@@download/ENCFF813HXE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF985ZAA bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF893VEW 6805160 ENCODE Processing Pipeline b2f94cc92896732b7edd15eafd3feca1 https://www.encodeproject.org/files/ENCFF985ZAA/@@download/ENCFF985ZAA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF491UDD bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF780ZCG, ENCFF893VEW 7156772 ENCODE Processing Pipeline fc5a662bfd6dbf2ca9ec5ecba7bb9647 https://www.encodeproject.org/files/ENCFF491UDD/@@download/ENCFF491UDD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF749WIQ bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF780ZCG 6695060 ENCODE Processing Pipeline 56ec772e6870884b6859a00b1f6e3bba https://www.encodeproject.org/files/ENCFF749WIQ/@@download/ENCFF749WIQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF666RZC bigWig fold change over control ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF893VEW 1445261613 ENCODE Processing Pipeline 2c049ecfecc6af2971772eed2be5a9aa https://www.encodeproject.org/files/ENCFF666RZC/@@download/ENCFF666RZC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF111KGI bigBed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF749WIQ 13498940 ENCODE Processing Pipeline accf26fc9caf7543fd9632da6144e573 https://www.encodeproject.org/files/ENCFF111KGI/@@download/ENCFF111KGI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF089CHZ bed narrowPeak conservative idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF491UDD, ENCFF749WIQ, ENCFF985ZAA 255580 ENCODE Processing Pipeline 8af6cd7abd08f715083cd7494cfd23fd https://www.encodeproject.org/files/ENCFF089CHZ/@@download/ENCFF089CHZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF224AUG bed narrowPeak optimal idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF491UDD, ENCFF749WIQ, ENCFF985ZAA 267473 ENCODE Processing Pipeline 10dfa56f202815083b6018110dec2228 https://www.encodeproject.org/files/ENCFF224AUG/@@download/ENCFF224AUG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF632WUS bigBed narrowPeak optimal idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF224AUG 555735 ENCODE Processing Pipeline 80889aa31aa172747c07f82ed8b13302 https://www.encodeproject.org/files/ENCFF632WUS/@@download/ENCFF632WUS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF043SAE bigBed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF985ZAA 13449174 ENCODE Processing Pipeline 00ac3a0378d046a5835cde2b8fe6f0e1 https://www.encodeproject.org/files/ENCFF043SAE/@@download/ENCFF043SAE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF414VZU bigBed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF491UDD 13327740 ENCODE Processing Pipeline 01679e0be88afaa956c6e991831d662c https://www.encodeproject.org/files/ENCFF414VZU/@@download/ENCFF414VZU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF721YDS bigBed narrowPeak conservative idr thresholded peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF089CHZ 538088 ENCODE Processing Pipeline 2cd41bea0bc5388bcbb5564e97a53c76 https://www.encodeproject.org/files/ENCFF721YDS/@@download/ENCFF721YDS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF000XNC bam alignments ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XOE 353885516 Michael Snyder, Stanford 2a08f8108a463554e1d4a8bd89dc5963 https://www.encodeproject.org/files/ENCFF000XNC/@@download/ENCFF000XNC.bam hg19 released low read length biological replicates with identical biosample ENCFF000XND bam alignments ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XOI 389595340 Michael Snyder, Stanford 1ec0748bb0295d16abeaa44a1798d90f https://www.encodeproject.org/files/ENCFF000XND/@@download/ENCFF000XND.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNE bigBed narrowPeak peaks ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJP 1999162 Michael Snyder, Stanford 80f64723b5ceedc90a868339e4d423ad https://www.encodeproject.org/files/ENCFF000XNE/@@download/ENCFF000XNE.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XNJ bigWig signal ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 274524221 Michael Snyder, Stanford b1102117c93df010d0004b43c8bfb184 https://www.encodeproject.org/files/ENCFF000XNJ/@@download/ENCFF000XNJ.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XOE fastq reads ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 866753902 Michael Snyder, Stanford f7c5bbabdf706b1a486d9a257ee79589 https://www.encodeproject.org/files/ENCFF000XOE/@@download/ENCFF000XOE.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIG/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XOI fastq reads ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1100534582 Michael Snyder, Stanford 4532de7b8e12226305cf787462670895 https://www.encodeproject.org/files/ENCFF000XOI/@@download/ENCFF000XOI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIH/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJP bed narrowPeak peaks ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 931862 Michael Snyder, Stanford 73104677ddaf97f944ac7c8c97526bed https://www.encodeproject.org/files/ENCFF001VJP/@@download/ENCFF001VJP.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CTN bed narrowPeak optimal idr thresholded peaks ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 311276 ENCODE Consortium Analysis Working Group 333a8fbc667b992f645fbede4a5501c8 https://www.encodeproject.org/files/ENCFF002CTN/@@download/ENCFF002CTN.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF211RTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTN 801005 ENCODE Consortium c548639002cc4b6510ee08ec80b925e3 https://www.encodeproject.org/files/ENCFF211RTI/@@download/ENCFF211RTI.bigBed hg19 released low read length biological replicates with identical biosample ENCFF996EOY fastq reads ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 1 40 single-ended 437528904 Xiang-Dong Fu, UCSD 082b2926feefbcc02758751539ef7bd5 https://www.encodeproject.org/files/ENCFF996EOY/@@download/ENCFF996EOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF113ZAT/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF320DMB fastq reads ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 1 40 single-ended 598557611 Xiang-Dong Fu, UCSD 98cc80a72a00c548de7165bee9570e4d https://www.encodeproject.org/files/ENCFF320DMB/@@download/ENCFF320DMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF911KYO/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF594WOK bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF807MUK, ENCFF996EOY 302639949 ENCODE Processing Pipeline e6890d78095efb500910db03bcda928f https://www.encodeproject.org/files/ENCFF594WOK/@@download/ENCFF594WOK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF957SXO bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF320DMB, ENCFF807MUK 383945707 ENCODE Processing Pipeline 436735e18271c1f6bc2b928f9a11121d https://www.encodeproject.org/files/ENCFF957SXO/@@download/ENCFF957SXO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF953XJD bigWig signal p-value ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF594WOK, ENCFF922JGL 410722565 ENCODE Processing Pipeline 39e4d0e91baeb65aa5c5884a033906f2 https://www.encodeproject.org/files/ENCFF953XJD/@@download/ENCFF953XJD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF519IFN bigWig signal p-value ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF594WOK, ENCFF851QFR, ENCFF922JGL, ENCFF957SXO 828175187 ENCODE Processing Pipeline c30d0c69cf5f429eb6cc8ddffe433e17 https://www.encodeproject.org/files/ENCFF519IFN/@@download/ENCFF519IFN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF967OVS bigWig fold change over control ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF594WOK, ENCFF922JGL 227443002 ENCODE Processing Pipeline 480672b5db020163ecbec8f30a32a994 https://www.encodeproject.org/files/ENCFF967OVS/@@download/ENCFF967OVS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF730DRK bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF594WOK, ENCFF922JGL 4192638 ENCODE Processing Pipeline e486321389bad03272e7499f7d4b681c https://www.encodeproject.org/files/ENCFF730DRK/@@download/ENCFF730DRK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF871OPM bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF594WOK, ENCFF851QFR, ENCFF922JGL, ENCFF957SXO 6432704 ENCODE Processing Pipeline c74b62013206b23ed044cd7cc0a405ea https://www.encodeproject.org/files/ENCFF871OPM/@@download/ENCFF871OPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF727HDV bigBed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF713DPH 13196773 ENCODE Processing Pipeline 5a68ae568adfd78e6bc25b99c944d5cc https://www.encodeproject.org/files/ENCFF727HDV/@@download/ENCFF727HDV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF707TKH bigWig fold change over control ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF594WOK, ENCFF851QFR, ENCFF922JGL, ENCFF957SXO 625552036 ENCODE Processing Pipeline 2133dbf53128c610957e3f3f63147522 https://www.encodeproject.org/files/ENCFF707TKH/@@download/ENCFF707TKH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF713DPH bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF851QFR, ENCFF957SXO 5377602 ENCODE Processing Pipeline b2aa8ae86ae6ab9b127a951cb49416f1 https://www.encodeproject.org/files/ENCFF713DPH/@@download/ENCFF713DPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF903IYX bigBed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF730DRK 9314340 ENCODE Processing Pipeline 1d21e94d09bb156cd589f18d6b86c5ca https://www.encodeproject.org/files/ENCFF903IYX/@@download/ENCFF903IYX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF427SNN bigBed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF871OPM 13442396 ENCODE Processing Pipeline 171b8a04017ae4bd2028856d225d0922 https://www.encodeproject.org/files/ENCFF427SNN/@@download/ENCFF427SNN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF909ZXH bigWig signal p-value ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF851QFR, ENCFF957SXO 417063637 ENCODE Processing Pipeline 12b3cb1166e5f9d8da3b0a97d45cc311 https://www.encodeproject.org/files/ENCFF909ZXH/@@download/ENCFF909ZXH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF514RGZ bigWig fold change over control ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF851QFR, ENCFF957SXO 287362785 ENCODE Processing Pipeline 60a28359858836e5502b1f9befd38ada https://www.encodeproject.org/files/ENCFF514RGZ/@@download/ENCFF514RGZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF424RBB bam unfiltered alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF643CGH, ENCFF996EOY 576758460 ENCODE Processing Pipeline c9f8ba717aa411074602be5e99810991 https://www.encodeproject.org/files/ENCFF424RBB/@@download/ENCFF424RBB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF107QHN bam unfiltered alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF320DMB, ENCFF643CGH 780585174 ENCODE Processing Pipeline a342d1ac03dcceec4dd04d81eeeb2fde https://www.encodeproject.org/files/ENCFF107QHN/@@download/ENCFF107QHN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF383MXO bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF643CGH, ENCFF996EOY 302221452 ENCODE Processing Pipeline 8b39ccaed445b516a60024ca8f81a7fe https://www.encodeproject.org/files/ENCFF383MXO/@@download/ENCFF383MXO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF374UVV bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF320DMB, ENCFF643CGH 383435474 ENCODE Processing Pipeline ead8555e582a32b9c5e83b58d22a3974 https://www.encodeproject.org/files/ENCFF374UVV/@@download/ENCFF374UVV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF982SSS bed narrowPeak conservative idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF001TDO, ENCFF713DPH, ENCFF730DRK, ENCFF871OPM 37337 ENCODE Processing Pipeline eaef4c11c78b01929aaa0a219b4bd4d4 https://www.encodeproject.org/files/ENCFF982SSS/@@download/ENCFF982SSS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF207MZH bigBed narrowPeak conservative idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF982SSS 110015 ENCODE Processing Pipeline 6805ae1265bbf2ee2430126cb6d42244 https://www.encodeproject.org/files/ENCFF207MZH/@@download/ENCFF207MZH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF117LLI bigBed narrowPeak optimal idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF682SIY 147485 ENCODE Processing Pipeline 1c1fa3191cb2c91ebd5d6f39510f8eb0 https://www.encodeproject.org/files/ENCFF117LLI/@@download/ENCFF117LLI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF682SIY bed narrowPeak optimal idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF001TDO, ENCFF713DPH, ENCFF730DRK, ENCFF871OPM 47832 ENCODE Processing Pipeline 5152e507af06d10f533a3a84de25302f https://www.encodeproject.org/files/ENCFF682SIY/@@download/ENCFF682SIY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF339MGM bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF374UVV 4735835 ENCODE Processing Pipeline c97c77d8aba2dfe4539f088a1aa8dba1 https://www.encodeproject.org/files/ENCFF339MGM/@@download/ENCFF339MGM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF395ZWB bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF374UVV, ENCFF383MXO 6213889 ENCODE Processing Pipeline 90fcf1c61514fe9ca65e5c75077a48e1 https://www.encodeproject.org/files/ENCFF395ZWB/@@download/ENCFF395ZWB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF765WAJ bigBed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF339MGM 10773108 ENCODE Processing Pipeline 7d4fd5dcbe554773647ef752a8895053 https://www.encodeproject.org/files/ENCFF765WAJ/@@download/ENCFF765WAJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF719ZHN bed narrowPeak conservative idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF122HCE, ENCFF339MGM, ENCFF395ZWB, ENCFF419RSJ 42167 ENCODE Processing Pipeline b78d84be52e6c06f802cbe09b49428e0 https://www.encodeproject.org/files/ENCFF719ZHN/@@download/ENCFF719ZHN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF345LZQ bigBed narrowPeak conservative idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF719ZHN 137692 ENCODE Processing Pipeline f948c8c9aa038ec2a991f618709ab5e7 https://www.encodeproject.org/files/ENCFF345LZQ/@@download/ENCFF345LZQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF320YOI bed narrowPeak optimal idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF122HCE, ENCFF339MGM, ENCFF395ZWB, ENCFF419RSJ 53620 ENCODE Processing Pipeline 78f6245614f181831b719cd7e3d52f0d https://www.encodeproject.org/files/ENCFF320YOI/@@download/ENCFF320YOI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF133DUX bigWig fold change over control ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF374UVV 291757587 ENCODE Processing Pipeline 0031cc50dcd6e4c12bc2d2170d273f47 https://www.encodeproject.org/files/ENCFF133DUX/@@download/ENCFF133DUX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF351IAK bigWig signal p-value ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF383MXO 451526104 ENCODE Processing Pipeline 9f684468e89837bbfe9234cd0e974ad8 https://www.encodeproject.org/files/ENCFF351IAK/@@download/ENCFF351IAK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF122HCE bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF383MXO 3997838 ENCODE Processing Pipeline 50783f12a2e22a0bddf68484736cb805 https://www.encodeproject.org/files/ENCFF122HCE/@@download/ENCFF122HCE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF110MJO bigWig signal p-value ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF374UVV, ENCFF383MXO 935180339 ENCODE Processing Pipeline b31bd343e77f05e2b3412a2034768593 https://www.encodeproject.org/files/ENCFF110MJO/@@download/ENCFF110MJO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF892RWK bigWig fold change over control ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF374UVV, ENCFF383MXO 626180702 ENCODE Processing Pipeline a9b8e8475302a55c0900c3b7d9f00576 https://www.encodeproject.org/files/ENCFF892RWK/@@download/ENCFF892RWK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF418DIO bigBed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF395ZWB 13453882 ENCODE Processing Pipeline c80ccc514466175c4fef8b83ef4cdf81 https://www.encodeproject.org/files/ENCFF418DIO/@@download/ENCFF418DIO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF081RGA bigWig fold change over control ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF383MXO 223106739 ENCODE Processing Pipeline 8b62b5f091906937a6f7fa995fe94196 https://www.encodeproject.org/files/ENCFF081RGA/@@download/ENCFF081RGA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF113VET bigBed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF122HCE 9137264 ENCODE Processing Pipeline 58417347d4de5c995403962388741b16 https://www.encodeproject.org/files/ENCFF113VET/@@download/ENCFF113VET.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF388WKQ bigWig signal p-value ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF374UVV 524425306 ENCODE Processing Pipeline 3200c7c49de37c34bdc6f9422e898bff https://www.encodeproject.org/files/ENCFF388WKQ/@@download/ENCFF388WKQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF591NWW bigBed narrowPeak optimal idr thresholded peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF320YOI 157278 ENCODE Processing Pipeline f0718c679d41e7b69a5c4d474ce00bae https://www.encodeproject.org/files/ENCFF591NWW/@@download/ENCFF591NWW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF352IEY bam unfiltered alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF320DMB, ENCFF807MUK 777196078 ENCODE Processing Pipeline c09633a9fb81da32a4edb771279b3cd5 https://www.encodeproject.org/files/ENCFF352IEY/@@download/ENCFF352IEY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF082WQA bam unfiltered alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF807MUK, ENCFF996EOY 574373792 ENCODE Processing Pipeline 2e5f7736d0439e79d0af45d6c3bf3999 https://www.encodeproject.org/files/ENCFF082WQA/@@download/ENCFF082WQA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF438OBK fastq reads ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 628115455 Xiang-Dong Fu, UCSD 7b46c8914880f831fad3a273a02ea194 https://www.encodeproject.org/files/ENCFF438OBK/@@download/ENCFF438OBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF338QTL/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF118JPH fastq reads ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 450364323 Xiang-Dong Fu, UCSD 16b9d3f35e791ec901a05799ee60cac3 https://www.encodeproject.org/files/ENCFF118JPH/@@download/ENCFF118JPH.fastq.gz Illumina HiSeq 2000 /files/ENCFF317LUD/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF926CUN fastq reads ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 1357108352 Xiang-Dong Fu, UCSD 5ca7c473090dbcdbd71e34b8edfa7160 https://www.encodeproject.org/files/ENCFF926CUN/@@download/ENCFF926CUN.fastq.gz Illumina HiSeq 2500 /files/ENCFF317LUD/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF946HSG bam unfiltered alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF438OBK, ENCFF807MUK 815956461 ENCODE Processing Pipeline 93684b90b960c488c51cd1d3e5f31712 https://www.encodeproject.org/files/ENCFF946HSG/@@download/ENCFF946HSG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF098EOS bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF438OBK, ENCFF807MUK 438308238 ENCODE Processing Pipeline 5fea5c8f5ed8ec485dfd2b6f41cf1d2c https://www.encodeproject.org/files/ENCFF098EOS/@@download/ENCFF098EOS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF458JNU bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF438OBK, ENCFF643CGH 437853420 ENCODE Processing Pipeline 01ebd87ad6a1b3372ffb58e06d9666fd https://www.encodeproject.org/files/ENCFF458JNU/@@download/ENCFF458JNU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF650AZW bam unfiltered alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF438OBK, ENCFF643CGH 819320421 ENCODE Processing Pipeline d9ec03a564126f9099932ebba6aafb8f https://www.encodeproject.org/files/ENCFF650AZW/@@download/ENCFF650AZW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF140KEX bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF118JPH, ENCFF807MUK, ENCFF926CUN 404890070 ENCODE Processing Pipeline 7de55b79a6a26cc50e9310512bad11fe https://www.encodeproject.org/files/ENCFF140KEX/@@download/ENCFF140KEX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF108SNZ bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF118JPH, ENCFF643CGH, ENCFF926CUN 404390606 ENCODE Processing Pipeline 98524a0e0cd2b0b093eea69b9beed857 https://www.encodeproject.org/files/ENCFF108SNZ/@@download/ENCFF108SNZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF406TAS bam unfiltered alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF118JPH, ENCFF643CGH, ENCFF926CUN 1703297219 ENCODE Processing Pipeline 42a167de62194f494c418eef7c9ad316 https://www.encodeproject.org/files/ENCFF406TAS/@@download/ENCFF406TAS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF342UCZ bam unfiltered alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF118JPH, ENCFF807MUK, ENCFF926CUN 1692865507 ENCODE Processing Pipeline 61caef1e22fc666ded2195e42d1b5b07 https://www.encodeproject.org/files/ENCFF342UCZ/@@download/ENCFF342UCZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF308RAP bigWig fold change over control ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF108SNZ, ENCFF836GUS 327564973 ENCODE Processing Pipeline 01c2064a5c115fbb7b4c91c84c28f8a7 https://www.encodeproject.org/files/ENCFF308RAP/@@download/ENCFF308RAP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF439KLP bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF108SNZ, ENCFF345ODV, ENCFF458JNU, ENCFF836GUS 6685429 ENCODE Processing Pipeline 12efe09109143020a9b3bb1089a069b7 https://www.encodeproject.org/files/ENCFF439KLP/@@download/ENCFF439KLP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF856DXD bigBed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF201PAF 13266015 ENCODE Processing Pipeline 221b9bb8574c97202e0319b127f76706 https://www.encodeproject.org/files/ENCFF856DXD/@@download/ENCFF856DXD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF060ZSF bigWig signal p-value ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF108SNZ, ENCFF345ODV, ENCFF458JNU, ENCFF836GUS 880401229 ENCODE Processing Pipeline a3a0daaec87d5e501fae1c74f4dd05c2 https://www.encodeproject.org/files/ENCFF060ZSF/@@download/ENCFF060ZSF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF941XZW bed narrowPeak optimal idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF201PAF, ENCFF250WGH, ENCFF419RSJ, ENCFF439KLP 50682 ENCODE Processing Pipeline 8bf0dd9d3ce9826e344eaad858457ff8 https://www.encodeproject.org/files/ENCFF941XZW/@@download/ENCFF941XZW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF201PAF bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF108SNZ, ENCFF836GUS 5356728 ENCODE Processing Pipeline c6e003439662267ffa664d4f7a5d8f0a https://www.encodeproject.org/files/ENCFF201PAF/@@download/ENCFF201PAF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF369IJD bigBed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF439KLP 13465438 ENCODE Processing Pipeline 6beb875baec05e2af8bd14b7d934f3f5 https://www.encodeproject.org/files/ENCFF369IJD/@@download/ENCFF369IJD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF246QEB bigWig signal p-value ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF108SNZ, ENCFF836GUS 518966826 ENCODE Processing Pipeline 235f7b855caaefd8f515735289067570 https://www.encodeproject.org/files/ENCFF246QEB/@@download/ENCFF246QEB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF567SMD bigWig fold change over control ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF345ODV, ENCFF458JNU 340919082 ENCODE Processing Pipeline 1a26847c44d8834e29cfff64a2a3a42d https://www.encodeproject.org/files/ENCFF567SMD/@@download/ENCFF567SMD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF599TBQ bigWig signal p-value ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF345ODV, ENCFF458JNU 529507432 ENCODE Processing Pipeline a4409835fa57443e39013e9a6b537b78 https://www.encodeproject.org/files/ENCFF599TBQ/@@download/ENCFF599TBQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF114VUJ bigWig fold change over control ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF108SNZ, ENCFF345ODV, ENCFF458JNU, ENCFF836GUS 767111270 ENCODE Processing Pipeline 0b6990c99ce203f417334707c046fe94 https://www.encodeproject.org/files/ENCFF114VUJ/@@download/ENCFF114VUJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF862PIF bigBed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF250WGH 13129144 ENCODE Processing Pipeline edd59c5eada1a59774d49a0e46dffadb https://www.encodeproject.org/files/ENCFF862PIF/@@download/ENCFF862PIF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF520LYV bigBed narrowPeak conservative idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF851MOQ 113727 ENCODE Processing Pipeline 69d7bcc1b50fea3491cdadb76a82589b https://www.encodeproject.org/files/ENCFF520LYV/@@download/ENCFF520LYV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF250WGH bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF345ODV, ENCFF458JNU 4782656 ENCODE Processing Pipeline 02dae798b1136e43001198f7e6e9397b https://www.encodeproject.org/files/ENCFF250WGH/@@download/ENCFF250WGH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF851MOQ bed narrowPeak conservative idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF201PAF, ENCFF250WGH, ENCFF419RSJ, ENCFF439KLP 35120 ENCODE Processing Pipeline ee8768a805cf41bb14d2cfa5f4d013d2 https://www.encodeproject.org/files/ENCFF851MOQ/@@download/ENCFF851MOQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF739EZC bigBed narrowPeak optimal idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF941XZW 136940 ENCODE Processing Pipeline a4d00607c02f42a070acf2384f4095df https://www.encodeproject.org/files/ENCFF739EZC/@@download/ENCFF739EZC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF020EYY bigWig signal p-value ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF140KEX, ENCFF502LLI 509750364 ENCODE Processing Pipeline 77ad44ed27f522f8901fa998500259ed https://www.encodeproject.org/files/ENCFF020EYY/@@download/ENCFF020EYY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF815ESE bigWig fold change over control ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF140KEX, ENCFF502LLI 310176741 ENCODE Processing Pipeline ee37ad6b3956d7b9ff5e71f0078cc53f https://www.encodeproject.org/files/ENCFF815ESE/@@download/ENCFF815ESE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF316TNC bigWig signal p-value ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF098EOS, ENCFF325CNX 500106937 ENCODE Processing Pipeline a083bd370486f82492888bfe339f4f11 https://www.encodeproject.org/files/ENCFF316TNC/@@download/ENCFF316TNC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF554MYS bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF140KEX, ENCFF502LLI 5425583 ENCODE Processing Pipeline d8257879064125b49782be75467d4b28 https://www.encodeproject.org/files/ENCFF554MYS/@@download/ENCFF554MYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF175XYE bigWig fold change over control ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF098EOS, ENCFF140KEX, ENCFF325CNX, ENCFF502LLI 767879197 ENCODE Processing Pipeline 507d11e16517dfcd8a126da9fc7486d5 https://www.encodeproject.org/files/ENCFF175XYE/@@download/ENCFF175XYE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF655DJE bigWig signal p-value ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF098EOS, ENCFF140KEX, ENCFF325CNX, ENCFF502LLI 839480445 ENCODE Processing Pipeline 91687b4a1445e66819072bf8464ae05d https://www.encodeproject.org/files/ENCFF655DJE/@@download/ENCFF655DJE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF190FHT bigWig fold change over control ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF098EOS, ENCFF325CNX 344346212 ENCODE Processing Pipeline fd345ae3fa1b35aaf25280010dda4c37 https://www.encodeproject.org/files/ENCFF190FHT/@@download/ENCFF190FHT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF467EXO bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF098EOS, ENCFF325CNX 5193552 ENCODE Processing Pipeline 63bc6d85f90c43c4f9f17146535f7253 https://www.encodeproject.org/files/ENCFF467EXO/@@download/ENCFF467EXO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF016WHL bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF098EOS, ENCFF140KEX, ENCFF325CNX, ENCFF502LLI 6682019 ENCODE Processing Pipeline fdf2f4c3d6786341452d6875749166e8 https://www.encodeproject.org/files/ENCFF016WHL/@@download/ENCFF016WHL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF193JXF bigBed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF554MYS 13243879 ENCODE Processing Pipeline a7ea9f3bebe1d4b16a04a032d2f5449a https://www.encodeproject.org/files/ENCFF193JXF/@@download/ENCFF193JXF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF920GPR bigBed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF467EXO 13237040 ENCODE Processing Pipeline 1a548b2d7e59a92397d6ed9d71ccf1a0 https://www.encodeproject.org/files/ENCFF920GPR/@@download/ENCFF920GPR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF612KRU bigBed narrowPeak optimal idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF881XQF 131076 ENCODE Processing Pipeline dd116379ca7b252f8ca1dd3ad1a26f3e https://www.encodeproject.org/files/ENCFF612KRU/@@download/ENCFF612KRU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF573DIV bigBed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF016WHL 13450025 ENCODE Processing Pipeline c746b27fe92f16d54123e0c7034d1a99 https://www.encodeproject.org/files/ENCFF573DIV/@@download/ENCFF573DIV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF881XQF bed narrowPeak optimal idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF016WHL, ENCFF467EXO, ENCFF554MYS 47460 ENCODE Processing Pipeline 3ba52950fce22dbd107dae09bd3ed496 https://www.encodeproject.org/files/ENCFF881XQF/@@download/ENCFF881XQF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF970WJK bed narrowPeak conservative idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF016WHL, ENCFF467EXO, ENCFF554MYS 34498 ENCODE Processing Pipeline b1c79f0e8f2be53da78995e55d187a64 https://www.encodeproject.org/files/ENCFF970WJK/@@download/ENCFF970WJK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF257JFV bigBed narrowPeak conservative idr thresholded peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF970WJK 111709 ENCODE Processing Pipeline 6680d0ab622206688e1306dc3b5204e7 https://www.encodeproject.org/files/ENCFF257JFV/@@download/ENCFF257JFV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002DPG fastq reads ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EFW 3407184602 Michael Snyder, Stanford 1aca41c2d9883e6e653a43aa9783d051 SRA:SRR6213980 https://www.encodeproject.org/files/ENCFF002DPG/@@download/ENCFF002DPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF067NIX bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF002DPG, ENCFF002EFW, ENCFF807MUK 5417281731 ENCODE Processing Pipeline 3d7eda0874607c086e4b7aabdc5dcf27 https://www.encodeproject.org/files/ENCFF067NIX/@@download/ENCFF067NIX.bam hg19 released mild to moderate bottlenecking ENCFF002EFW fastq reads ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPG 3213581911 Michael Snyder, Stanford 14b5c4795310853881d2f032f8493229 SRA:SRR6213980 https://www.encodeproject.org/files/ENCFF002EFW/@@download/ENCFF002EFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF894NUI fastq reads ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 1 101 paired-ended 1 ENCFF809IJU 3266619404 Michael Snyder, Stanford 43c31e6395d3ba49d6e0f39ebb7f7dca SRA:SRR6213981 https://www.encodeproject.org/files/ENCFF894NUI/@@download/ENCFF894NUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF809IJU fastq reads ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 1 101 paired-ended 2 ENCFF894NUI 3246972526 Michael Snyder, Stanford 2bfdc20574ca6245aed61aa4a29b825b SRA:SRR6213981 https://www.encodeproject.org/files/ENCFF809IJU/@@download/ENCFF809IJU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF408PVR bam unfiltered alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 101 ENCFF643CGH, ENCFF809IJU, ENCFF894NUI 6338717769 ENCODE Processing Pipeline 00e3e40d38bacc848faa501711625229 https://www.encodeproject.org/files/ENCFF408PVR/@@download/ENCFF408PVR.bam GRCh38 released mild to moderate bottlenecking ENCFF560QOE bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 100 ENCFF002DPG, ENCFF002EFW, ENCFF643CGH 5419818536 ENCODE Processing Pipeline 9d2a854513d07c5e8b6b29ddb3ee1b46 https://www.encodeproject.org/files/ENCFF560QOE/@@download/ENCFF560QOE.bam GRCh38 released mild to moderate bottlenecking ENCFF061FRE bam unfiltered alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 100 ENCFF002DPG, ENCFF002EFW, ENCFF643CGH 6964213714 ENCODE Processing Pipeline 48e23849f6b39e70cbd3bf9497db2e69 https://www.encodeproject.org/files/ENCFF061FRE/@@download/ENCFF061FRE.bam GRCh38 released mild to moderate bottlenecking ENCFF508SQK bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 101 ENCFF643CGH, ENCFF809IJU, ENCFF894NUI 5553607561 ENCODE Processing Pipeline 8e845094bc6120b06bb64086293a023b https://www.encodeproject.org/files/ENCFF508SQK/@@download/ENCFF508SQK.bam GRCh38 released mild to moderate bottlenecking ENCFF366BLM bam unfiltered alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 101 ENCFF807MUK, ENCFF809IJU, ENCFF894NUI 6331725144 ENCODE Processing Pipeline 5250f505d96ada86efdc7eced6399753 https://www.encodeproject.org/files/ENCFF366BLM/@@download/ENCFF366BLM.bam hg19 released mild to moderate bottlenecking ENCFF642HGZ bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 101 ENCFF807MUK, ENCFF809IJU, ENCFF894NUI 5551099504 ENCODE Processing Pipeline 6cd78fc49e0e979a38db8f285a602247 https://www.encodeproject.org/files/ENCFF642HGZ/@@download/ENCFF642HGZ.bam hg19 released mild to moderate bottlenecking ENCFF730EIE bigWig signal p-value ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF227IZS, ENCFF508SQK, ENCFF560QOE, ENCFF910IKB 2104992837 ENCODE Processing Pipeline 28e5f049adf77fcca3d141f36ec69a29 https://www.encodeproject.org/files/ENCFF730EIE/@@download/ENCFF730EIE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF580BLR bigWig fold change over control ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF508SQK, ENCFF910IKB 1375759780 ENCODE Processing Pipeline 8711ea560066bf5e3674b3ef63ad6e95 https://www.encodeproject.org/files/ENCFF580BLR/@@download/ENCFF580BLR.bigWig GRCh38 released mild to moderate bottlenecking ENCFF781GEB bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF227IZS, ENCFF508SQK, ENCFF560QOE, ENCFF910IKB 7277749 ENCODE Processing Pipeline 9faf5c2dba06158342b4278665b580bd https://www.encodeproject.org/files/ENCFF781GEB/@@download/ENCFF781GEB.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF435LOX bigBed narrowPeak optimal idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF459XLR 1168402 ENCODE Processing Pipeline 6d90dcf9108168be932c1c24d440c1e3 https://www.encodeproject.org/files/ENCFF435LOX/@@download/ENCFF435LOX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF434RKN bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF508SQK, ENCFF910IKB 6934143 ENCODE Processing Pipeline 8c3e70a351cdc1593fb66d999d6931d5 https://www.encodeproject.org/files/ENCFF434RKN/@@download/ENCFF434RKN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF609XFL bigBed narrowPeak conservative idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF678KKB 900867 ENCODE Processing Pipeline 3c6dcbaf94b01197b6f33f4c66c109c3 https://www.encodeproject.org/files/ENCFF609XFL/@@download/ENCFF609XFL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF811NAA bigWig fold change over control ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF227IZS, ENCFF560QOE 1323071793 ENCODE Processing Pipeline 1481d7de5f8f0fbb76e12d770e63f0e5 https://www.encodeproject.org/files/ENCFF811NAA/@@download/ENCFF811NAA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF648XXD bigWig fold change over control ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF227IZS, ENCFF508SQK, ENCFF560QOE, ENCFF910IKB 2325737157 ENCODE Processing Pipeline fcf3d4defa018cb5b1a4c15ac5b9ae10 https://www.encodeproject.org/files/ENCFF648XXD/@@download/ENCFF648XXD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF306EOV bigBed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF230BXX 12895226 ENCODE Processing Pipeline b41945320f5180a6afe23b649acee9d7 https://www.encodeproject.org/files/ENCFF306EOV/@@download/ENCFF306EOV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF349SOC bigBed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF781GEB 12788644 ENCODE Processing Pipeline 154bd5b3be1f3473ac4df02b66a9de0d https://www.encodeproject.org/files/ENCFF349SOC/@@download/ENCFF349SOC.bigBed GRCh38 released mild to moderate bottlenecking ENCFF678KKB bed narrowPeak conservative idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF230BXX, ENCFF419RSJ, ENCFF434RKN, ENCFF781GEB 380796 ENCODE Processing Pipeline 8bc63c632252148fc0b7a18dc70f0d35 https://www.encodeproject.org/files/ENCFF678KKB/@@download/ENCFF678KKB.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF459XLR bed narrowPeak optimal idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF230BXX, ENCFF419RSJ, ENCFF434RKN, ENCFF781GEB 521870 ENCODE Processing Pipeline d70be6acc32e1783ddb880b4a74e4bfe https://www.encodeproject.org/files/ENCFF459XLR/@@download/ENCFF459XLR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF751GOP bigWig signal p-value ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF227IZS, ENCFF560QOE 1325905182 ENCODE Processing Pipeline c64871052ba0ffc31a3ce6ebf0c02cbe https://www.encodeproject.org/files/ENCFF751GOP/@@download/ENCFF751GOP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF445VZZ bigWig signal p-value ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF508SQK, ENCFF910IKB 1234118152 ENCODE Processing Pipeline c58818c27b7a2f52491083bb85032fb1 https://www.encodeproject.org/files/ENCFF445VZZ/@@download/ENCFF445VZZ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF230BXX bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF227IZS, ENCFF560QOE 7082043 ENCODE Processing Pipeline 14225da22f608cc33e0ed62ff29b2748 https://www.encodeproject.org/files/ENCFF230BXX/@@download/ENCFF230BXX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF732HRK bigBed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF434RKN 13146307 ENCODE Processing Pipeline fa9725304c806b6527b5af0f0912f7cb https://www.encodeproject.org/files/ENCFF732HRK/@@download/ENCFF732HRK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF886VNQ bam unfiltered alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 100 ENCFF002DPG, ENCFF002EFW, ENCFF807MUK 6959155504 ENCODE Processing Pipeline 1f7a0d7bf4180eaf1f38e5a842b1cd5c https://www.encodeproject.org/files/ENCFF886VNQ/@@download/ENCFF886VNQ.bam hg19 released mild to moderate bottlenecking ENCFF256EDM bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 100 ENCFF002DPG, ENCFF002EFW, ENCFF807MUK 5417281757 ENCODE Processing Pipeline 149ac0e9c434cbfe71da540a1d07cc6f https://www.encodeproject.org/files/ENCFF256EDM/@@download/ENCFF256EDM.bam hg19 released mild to moderate bottlenecking ENCFF998FDB bigWig fold change over control ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF051LWI, ENCFF256EDM 1326067233 ENCODE Processing Pipeline e3131bf1069c37f1ffc2e4c7190c5713 https://www.encodeproject.org/files/ENCFF998FDB/@@download/ENCFF998FDB.bigWig hg19 released mild to moderate bottlenecking ENCFF861ZTZ bigBed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF976RBY 12886766 ENCODE Processing Pipeline fc4483197c4e1daa1bfc6d7baa2b3ec9 https://www.encodeproject.org/files/ENCFF861ZTZ/@@download/ENCFF861ZTZ.bigBed hg19 released mild to moderate bottlenecking ENCFF196SWJ bigBed narrowPeak optimal idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF350YXB 1176415 ENCODE Processing Pipeline a7eb3e05c7a6248cf2c421d16a01ce71 https://www.encodeproject.org/files/ENCFF196SWJ/@@download/ENCFF196SWJ.bigBed hg19 released mild to moderate bottlenecking ENCFF749IJG bigWig signal p-value ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF051LWI, ENCFF256EDM 1265139206 ENCODE Processing Pipeline bd4717ec671839f1d0aeb0706d348139 https://www.encodeproject.org/files/ENCFF749IJG/@@download/ENCFF749IJG.bigWig hg19 released mild to moderate bottlenecking ENCFF554TRW bigWig signal p-value ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF051LWI, ENCFF256EDM, ENCFF581ZJL, ENCFF642HGZ 2116130154 ENCODE Processing Pipeline 971ce6e1b76d3c26d1f2fef8828b495e https://www.encodeproject.org/files/ENCFF554TRW/@@download/ENCFF554TRW.bigWig hg19 released mild to moderate bottlenecking ENCFF883SHN bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF051LWI, ENCFF256EDM, ENCFF581ZJL, ENCFF642HGZ 7275592 ENCODE Processing Pipeline d52c2dfc5e7b427d4e4b4a850ee1f509 https://www.encodeproject.org/files/ENCFF883SHN/@@download/ENCFF883SHN.bed.gz hg19 released mild to moderate bottlenecking ENCFF785CYJ bigBed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF883SHN 12781963 ENCODE Processing Pipeline 777cc03065a0cc94cd5beb4726eeb2b4 https://www.encodeproject.org/files/ENCFF785CYJ/@@download/ENCFF785CYJ.bigBed hg19 released mild to moderate bottlenecking ENCFF120WQF bed narrowPeak conservative idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF001TDO, ENCFF326WKP, ENCFF883SHN, ENCFF976RBY 379571 ENCODE Processing Pipeline c1f70651c0b600a10a3f8c043cf813e8 https://www.encodeproject.org/files/ENCFF120WQF/@@download/ENCFF120WQF.bed.gz hg19 released mild to moderate bottlenecking ENCFF573SRH bigWig signal p-value ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF581ZJL, ENCFF642HGZ 1242020161 ENCODE Processing Pipeline 9fec6598355120b7a7682b7923a9fd1f https://www.encodeproject.org/files/ENCFF573SRH/@@download/ENCFF573SRH.bigWig hg19 released mild to moderate bottlenecking ENCFF453NPD bigWig fold change over control ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF581ZJL, ENCFF642HGZ 1386490040 ENCODE Processing Pipeline 901c396ad230e346e7a2e105b742f3ae https://www.encodeproject.org/files/ENCFF453NPD/@@download/ENCFF453NPD.bigWig hg19 released mild to moderate bottlenecking ENCFF230NBV bigWig fold change over control ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF051LWI, ENCFF256EDM, ENCFF581ZJL, ENCFF642HGZ 2326527156 ENCODE Processing Pipeline 85e3d93fe99648b49c86d98e385f76af https://www.encodeproject.org/files/ENCFF230NBV/@@download/ENCFF230NBV.bigWig hg19 released mild to moderate bottlenecking ENCFF976RBY bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF051LWI, ENCFF256EDM 7083861 ENCODE Processing Pipeline 4e66d1f98e7e419ea59e2f50a4f92889 https://www.encodeproject.org/files/ENCFF976RBY/@@download/ENCFF976RBY.bed.gz hg19 released mild to moderate bottlenecking ENCFF326WKP bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF581ZJL, ENCFF642HGZ 6920691 ENCODE Processing Pipeline ea33ee518a15d0bfeef4315a1e029870 https://www.encodeproject.org/files/ENCFF326WKP/@@download/ENCFF326WKP.bed.gz hg19 released mild to moderate bottlenecking ENCFF902RQS bigBed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF326WKP 13125136 ENCODE Processing Pipeline 927ce0b4e182c67de88197f4b47ba20b https://www.encodeproject.org/files/ENCFF902RQS/@@download/ENCFF902RQS.bigBed hg19 released mild to moderate bottlenecking ENCFF469FIA bigBed narrowPeak conservative idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF120WQF 896770 ENCODE Processing Pipeline dc4d8caf34a2da6ad4bdcf79dc7367cb https://www.encodeproject.org/files/ENCFF469FIA/@@download/ENCFF469FIA.bigBed hg19 released mild to moderate bottlenecking ENCFF350YXB bed narrowPeak optimal idr thresholded peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF001TDO, ENCFF326WKP, ENCFF883SHN, ENCFF976RBY 528070 ENCODE Processing Pipeline 3ea3ef0e96deacc4e08f7eb62dbcdac3 https://www.encodeproject.org/files/ENCFF350YXB/@@download/ENCFF350YXB.bed.gz hg19 released mild to moderate bottlenecking ENCFF815ZVG fastq reads ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF811KIP 2249341575 Michael Snyder, Stanford d9d398705f3783db74638b583a923910 SRA:SRR5111699 https://www.encodeproject.org/files/ENCFF815ZVG/@@download/ENCFF815ZVG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF481UQC fastq reads ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF419KZP 2185484962 Michael Snyder, Stanford 61086e93c3ffecbf3a3e8796772510b7 SRA:SRR5111700 https://www.encodeproject.org/files/ENCFF481UQC/@@download/ENCFF481UQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF419KZP fastq reads ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF481UQC 2246269785 Michael Snyder, Stanford aec00ad73dfccf04ea61b7ee23a61a1f SRA:SRR5111700 https://www.encodeproject.org/files/ENCFF419KZP/@@download/ENCFF419KZP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF811KIP fastq reads ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF815ZVG 2310190560 Michael Snyder, Stanford c24e811e2e561c447bee6581ad654242 SRA:SRR5111699 https://www.encodeproject.org/files/ENCFF811KIP/@@download/ENCFF811KIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF795PDI bam unfiltered alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF811KIP, ENCFF815ZVG 4947669431 ENCODE Processing Pipeline 094413aef810d7aad4b6fbbf2cba9154 https://www.encodeproject.org/files/ENCFF795PDI/@@download/ENCFF795PDI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF230OUZ bam unfiltered alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419KZP, ENCFF481UQC, ENCFF643CGH 4814678642 ENCODE Processing Pipeline 26ed9acc9e4e6dbf8f307988763114cd https://www.encodeproject.org/files/ENCFF230OUZ/@@download/ENCFF230OUZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF116PTI bam unfiltered alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF811KIP, ENCFF815ZVG 4950501512 ENCODE Processing Pipeline 7cd3c3aa95ef9a51de23acc919399742 https://www.encodeproject.org/files/ENCFF116PTI/@@download/ENCFF116PTI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF874UGA bam unfiltered alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419KZP, ENCFF481UQC, ENCFF807MUK 4812134001 ENCODE Processing Pipeline e773ddec1a2265f9f57e2ea8ee9d7dbe https://www.encodeproject.org/files/ENCFF874UGA/@@download/ENCFF874UGA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF528MPO bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419KZP, ENCFF481UQC, ENCFF807MUK 3971860786 ENCODE Processing Pipeline c38440a7fd5913e5d252ebafa144509c https://www.encodeproject.org/files/ENCFF528MPO/@@download/ENCFF528MPO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF464LNE bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419KZP, ENCFF481UQC, ENCFF643CGH 3972123160 ENCODE Processing Pipeline 04b399230a95cc9b6581c6f3ce9a68e7 https://www.encodeproject.org/files/ENCFF464LNE/@@download/ENCFF464LNE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF286WTH bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF811KIP, ENCFF815ZVG 4132124749 ENCODE Processing Pipeline ae0a5b9a5a05d7c7700887ff7678716d https://www.encodeproject.org/files/ENCFF286WTH/@@download/ENCFF286WTH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF235WLU bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF811KIP, ENCFF815ZVG 4132243944 ENCODE Processing Pipeline 29ae9f29f2f0fb0b8ac8ad19a868eeca https://www.encodeproject.org/files/ENCFF235WLU/@@download/ENCFF235WLU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF639IZV bigWig signal p-value ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF286WTH 1296457584 ENCODE Processing Pipeline 39407711a456efffd4d52126afaae3bd https://www.encodeproject.org/files/ENCFF639IZV/@@download/ENCFF639IZV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF041JQS bigWig signal p-value ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528MPO 1313025389 ENCODE Processing Pipeline c3d1cffbe23044dad7b41496201dbf14 https://www.encodeproject.org/files/ENCFF041JQS/@@download/ENCFF041JQS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF563GFD bigWig signal p-value ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286WTH, ENCFF528MPO 1878120349 ENCODE Processing Pipeline 93ee6173eafe4c95f1634bce73a73a98 https://www.encodeproject.org/files/ENCFF563GFD/@@download/ENCFF563GFD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF766ZIX bigWig fold change over control ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF286WTH 1325013647 ENCODE Processing Pipeline ffe16b66f69d5080fd033e21bc26ae7b https://www.encodeproject.org/files/ENCFF766ZIX/@@download/ENCFF766ZIX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF273UJX bigWig fold change over control ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528MPO 1285241382 ENCODE Processing Pipeline 6d4da490d2de8686d2f62def50a5254e https://www.encodeproject.org/files/ENCFF273UJX/@@download/ENCFF273UJX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF382SKH bigWig fold change over control ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286WTH, ENCFF528MPO 1855960772 ENCODE Processing Pipeline 4c5375b045c1cb524f0c7fb65debea11 https://www.encodeproject.org/files/ENCFF382SKH/@@download/ENCFF382SKH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF175UOC bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF286WTH 7090961 ENCODE Processing Pipeline fc09ee140140a26478bc9b409ae43af4 https://www.encodeproject.org/files/ENCFF175UOC/@@download/ENCFF175UOC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF271VJM bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528MPO 7106395 ENCODE Processing Pipeline 84ebb1ff1b92e6d1b5fedd689f4556a2 https://www.encodeproject.org/files/ENCFF271VJM/@@download/ENCFF271VJM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF979KSY bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286WTH, ENCFF528MPO 7207376 ENCODE Processing Pipeline 5b8c4eb5c28e244adf3fe1f3706b2f29 https://www.encodeproject.org/files/ENCFF979KSY/@@download/ENCFF979KSY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF899TDG bigBed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF175UOC 12834481 ENCODE Processing Pipeline 98e38bdf5d25956bd31196755fba23e6 https://www.encodeproject.org/files/ENCFF899TDG/@@download/ENCFF899TDG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF049AZC bigBed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF271VJM 12906697 ENCODE Processing Pipeline a8ed39ffa2d67af0d8ec9e30e5c7e564 https://www.encodeproject.org/files/ENCFF049AZC/@@download/ENCFF049AZC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF604DBQ bigBed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF979KSY 12718621 ENCODE Processing Pipeline fe376225a456bba45e4fdf0a2b6f5ed1 https://www.encodeproject.org/files/ENCFF604DBQ/@@download/ENCFF604DBQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF389ZVX bed narrowPeak conservative idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF175UOC, ENCFF271VJM, ENCFF979KSY 689984 ENCODE Processing Pipeline 7f126782da8bc1f98b903e7a550157d2 https://www.encodeproject.org/files/ENCFF389ZVX/@@download/ENCFF389ZVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF522JYE bigBed narrowPeak conservative idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF389ZVX 1520683 ENCODE Processing Pipeline 81ab6385f3375ecd6cc397702ce4ca62 https://www.encodeproject.org/files/ENCFF522JYE/@@download/ENCFF522JYE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF232UWD bed narrowPeak optimal idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF175UOC, ENCFF271VJM, ENCFF979KSY 719548 ENCODE Processing Pipeline 534dd1d798aaf7794a32f4b69674baee https://www.encodeproject.org/files/ENCFF232UWD/@@download/ENCFF232UWD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF425GGZ bigBed narrowPeak optimal idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF232UWD 1577746 ENCODE Processing Pipeline da3603337ef44f7cece782c3c9560a05 https://www.encodeproject.org/files/ENCFF425GGZ/@@download/ENCFF425GGZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF137RRA bigWig signal p-value ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464LNE 1117344888 ENCODE Processing Pipeline f7e66ca6d7ec689418ed954d729829ef https://www.encodeproject.org/files/ENCFF137RRA/@@download/ENCFF137RRA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF108JAJ bigWig signal p-value ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF235WLU 1180744195 ENCODE Processing Pipeline 811211a16a7f41dec756dad7cb68e906 https://www.encodeproject.org/files/ENCFF108JAJ/@@download/ENCFF108JAJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF670RED bigWig signal p-value ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF235WLU, ENCFF464LNE 1500654124 ENCODE Processing Pipeline 6e1bcb00b5669fb326dcedb09cb0d238 https://www.encodeproject.org/files/ENCFF670RED/@@download/ENCFF670RED.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF126LTN bigWig fold change over control ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF235WLU 1324541946 ENCODE Processing Pipeline 29680527b94c7e1873e81473a34f6bf0 https://www.encodeproject.org/files/ENCFF126LTN/@@download/ENCFF126LTN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF928ZYW bigWig fold change over control ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464LNE 1286975294 ENCODE Processing Pipeline 8a61ecdd8724ff7e7eeee78f735e2bb0 https://www.encodeproject.org/files/ENCFF928ZYW/@@download/ENCFF928ZYW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF034PTR bigWig fold change over control ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF235WLU, ENCFF464LNE 1848366352 ENCODE Processing Pipeline 100e63736e6a6b50698c837897c61206 https://www.encodeproject.org/files/ENCFF034PTR/@@download/ENCFF034PTR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF992GER bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF235WLU 7151101 ENCODE Processing Pipeline 5421a7d2cb856bef7574b60a59847673 https://www.encodeproject.org/files/ENCFF992GER/@@download/ENCFF992GER.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF358QLK bigBed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF992GER 12942061 ENCODE Processing Pipeline f6a47b174623a3f1746866541894075a https://www.encodeproject.org/files/ENCFF358QLK/@@download/ENCFF358QLK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF755KRD bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464LNE 7117069 ENCODE Processing Pipeline b42fa07447864eee92fa61bd61e0fc64 https://www.encodeproject.org/files/ENCFF755KRD/@@download/ENCFF755KRD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF291UUQ bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF235WLU, ENCFF464LNE 7274118 ENCODE Processing Pipeline 89df6f5d097d034a71da87295ddf57fb https://www.encodeproject.org/files/ENCFF291UUQ/@@download/ENCFF291UUQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF730NHM bigBed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF755KRD 12965259 ENCODE Processing Pipeline b7fad339cc832c0db6e7de22c127da18 https://www.encodeproject.org/files/ENCFF730NHM/@@download/ENCFF730NHM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF155IHW bed narrowPeak conservative idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF291UUQ, ENCFF419RSJ, ENCFF755KRD, ENCFF992GER 713197 ENCODE Processing Pipeline 378f841bd2ca30b8ef38cda37a500526 https://www.encodeproject.org/files/ENCFF155IHW/@@download/ENCFF155IHW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF144LJP bigBed narrowPeak conservative idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF155IHW 1553866 ENCODE Processing Pipeline cc3108cb3f5d9d282e453290eb5739ae https://www.encodeproject.org/files/ENCFF144LJP/@@download/ENCFF144LJP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF605QMH bigBed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF291UUQ 12797850 ENCODE Processing Pipeline 539e7934681120369460aaf42d13c96f https://www.encodeproject.org/files/ENCFF605QMH/@@download/ENCFF605QMH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF270KRH bed narrowPeak optimal idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF291UUQ, ENCFF419RSJ, ENCFF755KRD, ENCFF992GER 734276 ENCODE Processing Pipeline ad95062828912ebbb24ddc075600b866 https://www.encodeproject.org/files/ENCFF270KRH/@@download/ENCFF270KRH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF660VOL bigBed narrowPeak optimal idr thresholded peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF270KRH 1596550 ENCODE Processing Pipeline 83b9d9fee97d6ec0dd9039aa6586ee36 https://www.encodeproject.org/files/ENCFF660VOL/@@download/ENCFF660VOL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF858OMD fastq reads ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF781UOJ 3062498821 Michael Snyder, Stanford a0d4cadb6f332c587aaaa13730403514 SRA:SRR5111452 https://www.encodeproject.org/files/ENCFF858OMD/@@download/ENCFF858OMD.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF709VMO fastq reads ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF539QEY 4299404237 Michael Snyder, Stanford 5bed8de59ab284fe60be5ed8e4a78d91 SRA:SRR5111453 https://www.encodeproject.org/files/ENCFF709VMO/@@download/ENCFF709VMO.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF539QEY fastq reads ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF709VMO 4114136642 Michael Snyder, Stanford a2ebd917367f8f3cc2b1c349274dd0f5 SRA:SRR5111453 https://www.encodeproject.org/files/ENCFF539QEY/@@download/ENCFF539QEY.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF781UOJ fastq reads ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF858OMD 3196174690 Michael Snyder, Stanford 1c58d6380f5cfe15a2f2abf5de39e945 SRA:SRR5111452 https://www.encodeproject.org/files/ENCFF781UOJ/@@download/ENCFF781UOJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF419PJL bam unfiltered alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF539QEY, ENCFF643CGH, ENCFF709VMO 7996007128 ENCODE Processing Pipeline 1eb89c991dd760cf818575e5e3376fbf https://www.encodeproject.org/files/ENCFF419PJL/@@download/ENCFF419PJL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF835INE bam unfiltered alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF781UOJ, ENCFF807MUK, ENCFF858OMD 6105592450 ENCODE Processing Pipeline 20af1dfde7b6402397968a3d1d0264be https://www.encodeproject.org/files/ENCFF835INE/@@download/ENCFF835INE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF479EEH bam unfiltered alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF643CGH, ENCFF781UOJ, ENCFF858OMD 6113886749 ENCODE Processing Pipeline b460481c669324509136016c1cca3668 https://www.encodeproject.org/files/ENCFF479EEH/@@download/ENCFF479EEH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF195ZCG bam unfiltered alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF539QEY, ENCFF709VMO, ENCFF807MUK 7984503192 ENCODE Processing Pipeline f1a0cac8e13ba577cbaec037fa07fda3 https://www.encodeproject.org/files/ENCFF195ZCG/@@download/ENCFF195ZCG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF946HGR bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF643CGH, ENCFF781UOJ, ENCFF858OMD 5165428381 ENCODE Processing Pipeline 52d58f2ab9099d2046d2df7ddbc7e289 https://www.encodeproject.org/files/ENCFF946HGR/@@download/ENCFF946HGR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF541CNR bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF781UOJ, ENCFF807MUK, ENCFF858OMD 5163097789 ENCODE Processing Pipeline f610229cc466c9b8167d8b5afa21f821 https://www.encodeproject.org/files/ENCFF541CNR/@@download/ENCFF541CNR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF667QVL bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF539QEY, ENCFF643CGH, ENCFF709VMO 6766826457 ENCODE Processing Pipeline 20f863c2bdf9ef13d7c782160baf9139 https://www.encodeproject.org/files/ENCFF667QVL/@@download/ENCFF667QVL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF579WVJ bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF539QEY, ENCFF709VMO, ENCFF807MUK 6763195815 ENCODE Processing Pipeline f8df62a137d8ae57e4dc7fedb6c7984b https://www.encodeproject.org/files/ENCFF579WVJ/@@download/ENCFF579WVJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF939XKW bigWig signal p-value ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF541CNR 1456301224 ENCODE Processing Pipeline 4e13aea83d84fceede8d9703e56cd42e https://www.encodeproject.org/files/ENCFF939XKW/@@download/ENCFF939XKW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF991PAT bigWig fold change over control ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF541CNR, ENCFF579WVJ 2633293971 ENCODE Processing Pipeline e0667ac189d5aa4e45bd44aa99fa4b36 https://www.encodeproject.org/files/ENCFF991PAT/@@download/ENCFF991PAT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF522DUD bigWig fold change over control ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF541CNR 1813524827 ENCODE Processing Pipeline 3c3473178a204178091dd2941538b3e8 https://www.encodeproject.org/files/ENCFF522DUD/@@download/ENCFF522DUD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF127FFP bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF541CNR, ENCFF579WVJ 7345372 ENCODE Processing Pipeline 842c7f9eb7c93d56329f89846031c68c https://www.encodeproject.org/files/ENCFF127FFP/@@download/ENCFF127FFP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF944FOZ bigBed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF613MHZ 13481953 ENCODE Processing Pipeline fef619bb6d5da473e16170a57710534c https://www.encodeproject.org/files/ENCFF944FOZ/@@download/ENCFF944FOZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF987CPX bigBed narrowPeak optimal idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF670DXC 2120183 ENCODE Processing Pipeline 4ab51e51c130c6050bd9644aecf45199 https://www.encodeproject.org/files/ENCFF987CPX/@@download/ENCFF987CPX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF953WWQ bigWig signal p-value ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF541CNR, ENCFF579WVJ 1923882620 ENCODE Processing Pipeline 8349bdfd5bb00a50d74ba5e5ccbee723 https://www.encodeproject.org/files/ENCFF953WWQ/@@download/ENCFF953WWQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF903CZK bigBed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF127FFP 13574372 ENCODE Processing Pipeline 9f33e8c0e5eff5624b4515bfad433c37 https://www.encodeproject.org/files/ENCFF903CZK/@@download/ENCFF903CZK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF670DXC bed narrowPeak optimal idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF078MOK, ENCFF127FFP, ENCFF613MHZ 1195905 ENCODE Processing Pipeline 0465f1ea03614644875e7f9dd8a5ac2d https://www.encodeproject.org/files/ENCFF670DXC/@@download/ENCFF670DXC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF613MHZ bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF579WVJ 7312955 ENCODE Processing Pipeline ecdd27bb354df5e2e64a504f17fdd710 https://www.encodeproject.org/files/ENCFF613MHZ/@@download/ENCFF613MHZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF078MOK bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF541CNR 7264390 ENCODE Processing Pipeline 97864feb20bf6b96b21617bc06494fe1 https://www.encodeproject.org/files/ENCFF078MOK/@@download/ENCFF078MOK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF984POO bigWig signal p-value ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF579WVJ 1971311266 ENCODE Processing Pipeline 825d767defccdc41f2d6766ca7dce6c3 https://www.encodeproject.org/files/ENCFF984POO/@@download/ENCFF984POO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF873EZO bigWig fold change over control ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF579WVJ 2066703660 ENCODE Processing Pipeline f7a3c6352a97e97542d01f3dfaae8fc0 https://www.encodeproject.org/files/ENCFF873EZO/@@download/ENCFF873EZO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF268LAC bigBed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF078MOK 13462301 ENCODE Processing Pipeline 8b26c75be69748e595f36e43570da227 https://www.encodeproject.org/files/ENCFF268LAC/@@download/ENCFF268LAC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF108WNX bed narrowPeak conservative idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF078MOK, ENCFF127FFP, ENCFF613MHZ 1099327 ENCODE Processing Pipeline 7902692ffc80f451880cadbde7fa6e98 https://www.encodeproject.org/files/ENCFF108WNX/@@download/ENCFF108WNX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF249ITZ bigBed narrowPeak conservative idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF108WNX 1978294 ENCODE Processing Pipeline 3a9c0a2a17dfe87c11e1c07bd33d9dde https://www.encodeproject.org/files/ENCFF249ITZ/@@download/ENCFF249ITZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF965CPQ bigWig signal p-value ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF667QVL, ENCFF810LLR 1975333896 ENCODE Processing Pipeline 63e79c396d829dd0d8f86a559ebfd92d https://www.encodeproject.org/files/ENCFF965CPQ/@@download/ENCFF965CPQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF269HUL bigWig signal p-value ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF810LLR, ENCFF946HGR 1603406924 ENCODE Processing Pipeline a030a3b90c792bf308aef1b63f8da833 https://www.encodeproject.org/files/ENCFF269HUL/@@download/ENCFF269HUL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF379LNM bigWig signal p-value ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF667QVL, ENCFF810LLR, ENCFF946HGR 1930567910 ENCODE Processing Pipeline 9dc0dc77c342b3df025109be6468cef8 https://www.encodeproject.org/files/ENCFF379LNM/@@download/ENCFF379LNM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF942CZY bigWig fold change over control ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF810LLR, ENCFF946HGR 1814545122 ENCODE Processing Pipeline c1b0b56b747b2ecb7db509b03f8e1cb3 https://www.encodeproject.org/files/ENCFF942CZY/@@download/ENCFF942CZY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF530WLZ bigWig fold change over control ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF667QVL, ENCFF810LLR 2074638989 ENCODE Processing Pipeline 4d3f657b2dd0edc80e6ce656016ad17b https://www.encodeproject.org/files/ENCFF530WLZ/@@download/ENCFF530WLZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF548JBQ bigWig fold change over control ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF667QVL, ENCFF810LLR, ENCFF946HGR 2643332639 ENCODE Processing Pipeline 37bbee77baf27f47aca3cd2df3602a00 https://www.encodeproject.org/files/ENCFF548JBQ/@@download/ENCFF548JBQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF315SXD bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF667QVL, ENCFF810LLR, ENCFF946HGR 7341006 ENCODE Processing Pipeline 4e9642a73b45d3a5107cfde807aa5b5c https://www.encodeproject.org/files/ENCFF315SXD/@@download/ENCFF315SXD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF532MCH bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF667QVL, ENCFF810LLR 7291528 ENCODE Processing Pipeline 9cc8a0919f0264945199cb0d1e8b6f83 https://www.encodeproject.org/files/ENCFF532MCH/@@download/ENCFF532MCH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF677FWC bigBed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF532MCH 13473436 ENCODE Processing Pipeline b01c82ecffb82397077a0c6001b15767 https://www.encodeproject.org/files/ENCFF677FWC/@@download/ENCFF677FWC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF858DYA bigBed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF315SXD 13577450 ENCODE Processing Pipeline fc0c2c1a7bfac9c2e73e0ddfc21d284e https://www.encodeproject.org/files/ENCFF858DYA/@@download/ENCFF858DYA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF110AKN bigBed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF868BIG 13474183 ENCODE Processing Pipeline e3750b655396e19b5fb2eb5bde41e5d3 https://www.encodeproject.org/files/ENCFF110AKN/@@download/ENCFF110AKN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF644ASO bed narrowPeak conservative idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF315SXD, ENCFF419RSJ, ENCFF532MCH, ENCFF868BIG 1098588 ENCODE Processing Pipeline b27b8810bfd95a0efdb589b05a632304 https://www.encodeproject.org/files/ENCFF644ASO/@@download/ENCFF644ASO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF576YVB bigBed narrowPeak optimal idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF842RKM 2107457 ENCODE Processing Pipeline e2909cd64937b2727522bdc1c08bb7ac https://www.encodeproject.org/files/ENCFF576YVB/@@download/ENCFF576YVB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF868BIG bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF810LLR, ENCFF946HGR 7259432 ENCODE Processing Pipeline 75a2e5ad3f4c42f80c163770f15e9173 https://www.encodeproject.org/files/ENCFF868BIG/@@download/ENCFF868BIG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF254MYK bigBed narrowPeak conservative idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF644ASO 1981313 ENCODE Processing Pipeline 84f01bf8c01a7ef65b165975e7466e47 https://www.encodeproject.org/files/ENCFF254MYK/@@download/ENCFF254MYK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF842RKM bed narrowPeak optimal idr thresholded peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF315SXD, ENCFF419RSJ, ENCFF532MCH, ENCFF868BIG 1185895 ENCODE Processing Pipeline 63b19c915ff7b7b7be0f7cc0ace4065b https://www.encodeproject.org/files/ENCFF842RKM/@@download/ENCFF842RKM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF088HIS fastq reads ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 1039943860 Xiang-Dong Fu, UCSD 68bbf8ceb5712802dfe475f6b7fa38b2 https://www.encodeproject.org/files/ENCFF088HIS/@@download/ENCFF088HIS.fastq.gz Illumina HiSeq 2500 /files/ENCFF061XKR/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF359XBS fastq reads ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 896209869 Xiang-Dong Fu, UCSD 82158a12c77f2be0cb34d9b97d50c539 https://www.encodeproject.org/files/ENCFF359XBS/@@download/ENCFF359XBS.fastq.gz Illumina HiSeq 2500 /files/ENCFF605JOL/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF059LDO bam unfiltered alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF088HIS, ENCFF643CGH 1408679153 ENCODE Processing Pipeline cefec5e23b9a48d580c22f11ef84d1af https://www.encodeproject.org/files/ENCFF059LDO/@@download/ENCFF059LDO.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF265QTC bam unfiltered alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF359XBS, ENCFF643CGH 1221605244 ENCODE Processing Pipeline d8af5eaa28f7ab1453f4fa7e039bd705 https://www.encodeproject.org/files/ENCFF265QTC/@@download/ENCFF265QTC.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF241OMA bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF359XBS, ENCFF807MUK 746538381 ENCODE Processing Pipeline eec6103b478a3f1dafa1c6b6db205123 https://www.encodeproject.org/files/ENCFF241OMA/@@download/ENCFF241OMA.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF437EJV bam unfiltered alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF359XBS, ENCFF807MUK 1218070500 ENCODE Processing Pipeline eab676abca03cc836861adfb0ac8da9f https://www.encodeproject.org/files/ENCFF437EJV/@@download/ENCFF437EJV.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF117KAP bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF359XBS, ENCFF643CGH 745812924 ENCODE Processing Pipeline 0b47d82fd042c5a061b2df4034295ee7 https://www.encodeproject.org/files/ENCFF117KAP/@@download/ENCFF117KAP.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF469DLB bam unfiltered alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF088HIS, ENCFF807MUK 1404490497 ENCODE Processing Pipeline 60f8605826cf8316c8a0a9726d6dbc8f https://www.encodeproject.org/files/ENCFF469DLB/@@download/ENCFF469DLB.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF157JVZ bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF088HIS, ENCFF807MUK 855049897 ENCODE Processing Pipeline c21875e6e673a9cfd15a37dbe11b8b06 https://www.encodeproject.org/files/ENCFF157JVZ/@@download/ENCFF157JVZ.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF705LQZ bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF088HIS, ENCFF643CGH 854240111 ENCODE Processing Pipeline e7319907c624e72c59a6e7bb76559587 https://www.encodeproject.org/files/ENCFF705LQZ/@@download/ENCFF705LQZ.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF486AQR bigWig fold change over control ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF157JVZ 487946650 ENCODE Processing Pipeline 464fa5da7a03af8579f9fd4ad51cd7b6 https://www.encodeproject.org/files/ENCFF486AQR/@@download/ENCFF486AQR.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF027RDE bigWig signal p-value ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF241OMA, ENCFF462KWM 693873928 ENCODE Processing Pipeline a27775d74105caf3fb0394fdb6cce9ab https://www.encodeproject.org/files/ENCFF027RDE/@@download/ENCFF027RDE.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF838DXO bigWig signal p-value ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF157JVZ, ENCFF241OMA, ENCFF462KWM 1092333514 ENCODE Processing Pipeline 3cc74fde76ec6e56f14055b021c60cb5 https://www.encodeproject.org/files/ENCFF838DXO/@@download/ENCFF838DXO.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF775MER bigWig signal p-value ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF157JVZ 591734989 ENCODE Processing Pipeline d2a9a500cce80b573a31c9c3634ec7f9 https://www.encodeproject.org/files/ENCFF775MER/@@download/ENCFF775MER.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF199QOE bigBed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF163RUV 12797482 ENCODE Processing Pipeline 26694cea3bcc065d7189e50d28216093 https://www.encodeproject.org/files/ENCFF199QOE/@@download/ENCFF199QOE.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF383DHE bigWig fold change over control ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF157JVZ, ENCFF241OMA, ENCFF462KWM 1010106540 ENCODE Processing Pipeline c4fc39459f8c46dfd58cf99019313746 https://www.encodeproject.org/files/ENCFF383DHE/@@download/ENCFF383DHE.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF668MHE bigWig fold change over control ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF241OMA, ENCFF462KWM 469777977 ENCODE Processing Pipeline b8f3f450e322681c8ccdc297978df6fc https://www.encodeproject.org/files/ENCFF668MHE/@@download/ENCFF668MHE.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF163RUV bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF241OMA, ENCFF462KWM 6488511 ENCODE Processing Pipeline d72cce4de30dc672a79d564886852545 https://www.encodeproject.org/files/ENCFF163RUV/@@download/ENCFF163RUV.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF631VBZ bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF157JVZ 6645031 ENCODE Processing Pipeline 21f91444afdea51098b2b61f7d3b0470 https://www.encodeproject.org/files/ENCFF631VBZ/@@download/ENCFF631VBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF390KAD bigBed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF631VBZ 12855793 ENCODE Processing Pipeline cede0fe1191b282cc90c4afa7b1e483c https://www.encodeproject.org/files/ENCFF390KAD/@@download/ENCFF390KAD.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF051VIU bigBed narrowPeak conservative idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF837IBY 974993 ENCODE Processing Pipeline 23ace6b05bcd48590c94632aa8b8ec7b https://www.encodeproject.org/files/ENCFF051VIU/@@download/ENCFF051VIU.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF837IBY bed narrowPeak conservative idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF163RUV, ENCFF199TUN, ENCFF631VBZ 487296 ENCODE Processing Pipeline a6583b7b63e5b94cb6b5b72664b865af https://www.encodeproject.org/files/ENCFF837IBY/@@download/ENCFF837IBY.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF281XGE bigBed narrowPeak optimal idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF845GIK 1053451 ENCODE Processing Pipeline d00809d94055fe5ef6495cb1c107e7a8 https://www.encodeproject.org/files/ENCFF281XGE/@@download/ENCFF281XGE.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF199TUN bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF157JVZ, ENCFF241OMA, ENCFF462KWM 7038756 ENCODE Processing Pipeline 0973f533a5e59c4661834e44eaaa1db1 https://www.encodeproject.org/files/ENCFF199TUN/@@download/ENCFF199TUN.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF413PTD bigBed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF199TUN 12689556 ENCODE Processing Pipeline dd09954c060783503c69880c9a9bddd0 https://www.encodeproject.org/files/ENCFF413PTD/@@download/ENCFF413PTD.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF845GIK bed narrowPeak optimal idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF163RUV, ENCFF199TUN, ENCFF631VBZ 540160 ENCODE Processing Pipeline 155ec78cf5c9064229429d9026619f5e https://www.encodeproject.org/files/ENCFF845GIK/@@download/ENCFF845GIK.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF461AQB bigWig fold change over control ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF117KAP 480115973 ENCODE Processing Pipeline 1e598890c2f44cb86a2445b312ff4272 https://www.encodeproject.org/files/ENCFF461AQB/@@download/ENCFF461AQB.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF761MRO bigBed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF131SCG 12765242 ENCODE Processing Pipeline 7a9a0b69ddca1beba242b4a4cf0a7fda https://www.encodeproject.org/files/ENCFF761MRO/@@download/ENCFF761MRO.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF566FCI bigWig signal p-value ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF117KAP 664527776 ENCODE Processing Pipeline e14214c7c35f9961eb6e1c8ee6531803 https://www.encodeproject.org/files/ENCFF566FCI/@@download/ENCFF566FCI.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF633RHE bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF117KAP, ENCFF705LQZ 7108587 ENCODE Processing Pipeline 40387a71138767b3c0914ac56b2e85e7 https://www.encodeproject.org/files/ENCFF633RHE/@@download/ENCFF633RHE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF778OGY bigWig fold change over control ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF117KAP, ENCFF705LQZ 991909376 ENCODE Processing Pipeline 7e5c02b081b2c6b843dbf3eb27a54675 https://www.encodeproject.org/files/ENCFF778OGY/@@download/ENCFF778OGY.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF466CIM bigBed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF329ZXO 12811543 ENCODE Processing Pipeline beb3bbe0e9259c27640f4f26c9cde540 https://www.encodeproject.org/files/ENCFF466CIM/@@download/ENCFF466CIM.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF329ZXO bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705LQZ 6580086 ENCODE Processing Pipeline 1b61241b58073bb29a22c69ab74a91a2 https://www.encodeproject.org/files/ENCFF329ZXO/@@download/ENCFF329ZXO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF810PVS bigBed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF633RHE 12775366 ENCODE Processing Pipeline 9681552129c0477a1162cea21972e5b1 https://www.encodeproject.org/files/ENCFF810PVS/@@download/ENCFF810PVS.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF415ITA bigBed narrowPeak conservative idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF244PJM 1009169 ENCODE Processing Pipeline ab7d7b6523650ac784414cf9743b96cf https://www.encodeproject.org/files/ENCFF415ITA/@@download/ENCFF415ITA.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF292AJA bigWig signal p-value ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF117KAP, ENCFF705LQZ 967666730 ENCODE Processing Pipeline 44fa37f23b48017ee0e56cdd1ed6e471 https://www.encodeproject.org/files/ENCFF292AJA/@@download/ENCFF292AJA.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF131SCG bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF117KAP 6455596 ENCODE Processing Pipeline cc1f6dceaf20e2395f9fcc083694fb42 https://www.encodeproject.org/files/ENCFF131SCG/@@download/ENCFF131SCG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF244PJM bed narrowPeak conservative idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF131SCG, ENCFF329ZXO, ENCFF419RSJ, ENCFF633RHE 507602 ENCODE Processing Pipeline 4471f7f3cc4e5e69bf4eea53c0629ef2 https://www.encodeproject.org/files/ENCFF244PJM/@@download/ENCFF244PJM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF749INU bigWig signal p-value ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705LQZ 630875778 ENCODE Processing Pipeline 6eb6da79b2182cf5fd109c10f95bc6a0 https://www.encodeproject.org/files/ENCFF749INU/@@download/ENCFF749INU.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF644QJO bigWig fold change over control ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705LQZ 496541956 ENCODE Processing Pipeline af5ef048deb4d52a4cd66d31b5e7e781 https://www.encodeproject.org/files/ENCFF644QJO/@@download/ENCFF644QJO.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF330PDO bigBed narrowPeak optimal idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF790ZAQ 1096840 ENCODE Processing Pipeline 1511290f8bdf283ff6c89875a7ebd606 https://www.encodeproject.org/files/ENCFF330PDO/@@download/ENCFF330PDO.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF790ZAQ bed narrowPeak optimal idr thresholded peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF131SCG, ENCFF329ZXO, ENCFF419RSJ, ENCFF633RHE 566888 ENCODE Processing Pipeline 48045af22a4b7f95666293bc446bb5b9 https://www.encodeproject.org/files/ENCFF790ZAQ/@@download/ENCFF790ZAQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF172ORI fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF258XJK 3684043911 Michael Snyder, Stanford dd2f6af37dfd82512907e04d19ab6c75 SRA:SRR5111987 https://www.encodeproject.org/files/ENCFF172ORI/@@download/ENCFF172ORI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking ENCFF914JSK fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF394TEH 2753825174 Michael Snyder, Stanford 22a8049dcb637cb21405b20b5191fd2e SRA:SRR5111986 https://www.encodeproject.org/files/ENCFF914JSK/@@download/ENCFF914JSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking ENCFF394TEH fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF914JSK 2786851730 Michael Snyder, Stanford 12455758b53aa4e0bdff66067bb64d07 SRA:SRR5111986 https://www.encodeproject.org/files/ENCFF394TEH/@@download/ENCFF394TEH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking ENCFF258XJK fastq reads ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF172ORI 3633252575 Michael Snyder, Stanford 39f1276053e8a6f2fdabba3b614ce022 SRA:SRR5111987 https://www.encodeproject.org/files/ENCFF258XJK/@@download/ENCFF258XJK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking ENCFF856WGT bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF807MUK, ENCFF914JSK 5560471744 ENCODE Processing Pipeline c203ee66d2c56dfe1352f39dc6d9cc95 https://www.encodeproject.org/files/ENCFF856WGT/@@download/ENCFF856WGT.bam hg19 released mild to moderate bottlenecking ENCFF627EOF bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF807MUK 7124079385 ENCODE Processing Pipeline 07a2fadc2a5dcc0f81d78e181b73eef6 https://www.encodeproject.org/files/ENCFF627EOF/@@download/ENCFF627EOF.bam hg19 released mild to moderate bottlenecking ENCFF093ATD bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF807MUK, ENCFF914JSK 4292849395 ENCODE Processing Pipeline ef72fbb0565fbeeb524a41bb1df31def https://www.encodeproject.org/files/ENCFF093ATD/@@download/ENCFF093ATD.bam hg19 released mild to moderate bottlenecking ENCFF869BJB bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF807MUK 5433620911 ENCODE Processing Pipeline 943e016f126c602ae61af91418eee130 https://www.encodeproject.org/files/ENCFF869BJB/@@download/ENCFF869BJB.bam hg19 released mild to moderate bottlenecking ENCFF558VPD bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF643CGH 7128681584 ENCODE Processing Pipeline a4ca3f436a1a8ccf141825ae27c4aa7a https://www.encodeproject.org/files/ENCFF558VPD/@@download/ENCFF558VPD.bam GRCh38 released mild to moderate bottlenecking ENCFF479JEE bam unfiltered alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF643CGH, ENCFF914JSK 5565356663 ENCODE Processing Pipeline 9da09270748d05927ebed167c7a5a316 https://www.encodeproject.org/files/ENCFF479JEE/@@download/ENCFF479JEE.bam GRCh38 released mild to moderate bottlenecking ENCFF700PHB bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF643CGH, ENCFF914JSK 4301687007 ENCODE Processing Pipeline 12a80c43bdbfe0d4e46eb9cebd61019d https://www.encodeproject.org/files/ENCFF700PHB/@@download/ENCFF700PHB.bam GRCh38 released mild to moderate bottlenecking ENCFF603RWK bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF643CGH 5450252101 ENCODE Processing Pipeline baf02b1e396bacf9ef264fcc2752eaf8 https://www.encodeproject.org/files/ENCFF603RWK/@@download/ENCFF603RWK.bam GRCh38 released mild to moderate bottlenecking ENCFF371DYO bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF603RWK, ENCFF879YMO 1002123087 ENCODE Processing Pipeline 18973f6398c7b0628d4021eb69d178e7 https://www.encodeproject.org/files/ENCFF371DYO/@@download/ENCFF371DYO.bigWig GRCh38 released mild to moderate bottlenecking ENCFF249AMY bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF574BGV, ENCFF700PHB 970754062 ENCODE Processing Pipeline 53163bc56733f9bf0344bf61d3194190 https://www.encodeproject.org/files/ENCFF249AMY/@@download/ENCFF249AMY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF362LIB bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF574BGV, ENCFF603RWK, ENCFF700PHB, ENCFF879YMO 2000124726 ENCODE Processing Pipeline 6ee272b6a0918aa55c5947daa839ab66 https://www.encodeproject.org/files/ENCFF362LIB/@@download/ENCFF362LIB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF740CTY bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF574BGV, ENCFF700PHB 882301141 ENCODE Processing Pipeline e84a2c15a1aa1d01d1ef289781394e71 https://www.encodeproject.org/files/ENCFF740CTY/@@download/ENCFF740CTY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF805YAT bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF603RWK, ENCFF879YMO 1147238618 ENCODE Processing Pipeline 51dbb21cca03c00b2fdc382bbd9fbd37 https://www.encodeproject.org/files/ENCFF805YAT/@@download/ENCFF805YAT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF040BDS bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF603RWK, ENCFF879YMO 6844500 ENCODE Processing Pipeline dbe4ebcabd406cd58f6cadb73301dade https://www.encodeproject.org/files/ENCFF040BDS/@@download/ENCFF040BDS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF208YLJ bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF574BGV, ENCFF700PHB 6240681 ENCODE Processing Pipeline c9ce79efd3bde39254d5a1fbeb447d18 https://www.encodeproject.org/files/ENCFF208YLJ/@@download/ENCFF208YLJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF604ISL bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF574BGV, ENCFF603RWK, ENCFF700PHB, ENCFF879YMO 2028988868 ENCODE Processing Pipeline b1ae1d5326317403540ef1b7c3572815 https://www.encodeproject.org/files/ENCFF604ISL/@@download/ENCFF604ISL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF288AAV bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF574BGV, ENCFF603RWK, ENCFF700PHB, ENCFF879YMO 7162270 ENCODE Processing Pipeline 644c6e2b896534a37d54a2ffc512acfc https://www.encodeproject.org/files/ENCFF288AAV/@@download/ENCFF288AAV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF788VTS bed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040BDS, ENCFF208YLJ, ENCFF288AAV, ENCFF419RSJ 491068 ENCODE Processing Pipeline f767869d412e3d7488f0cc86e922ad7d https://www.encodeproject.org/files/ENCFF788VTS/@@download/ENCFF788VTS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF335ADU bed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040BDS, ENCFF208YLJ, ENCFF288AAV, ENCFF419RSJ 652047 ENCODE Processing Pipeline 76d70517bd30cb820b113c9da5dad4e1 https://www.encodeproject.org/files/ENCFF335ADU/@@download/ENCFF335ADU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF262EYY bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF040BDS 13591733 ENCODE Processing Pipeline d6a859666387952e0fd9e5063825266b https://www.encodeproject.org/files/ENCFF262EYY/@@download/ENCFF262EYY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF615OPK bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF208YLJ 13553777 ENCODE Processing Pipeline 760dda3830649875728e36a9a7a33331 https://www.encodeproject.org/files/ENCFF615OPK/@@download/ENCFF615OPK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF887VYV bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF288AAV 13501709 ENCODE Processing Pipeline 197d3e71c7e15082b6deb0da67571fef https://www.encodeproject.org/files/ENCFF887VYV/@@download/ENCFF887VYV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF794ABW bigBed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF788VTS 1096667 ENCODE Processing Pipeline 954fe121fece13ca9057ca4ac05b1d93 https://www.encodeproject.org/files/ENCFF794ABW/@@download/ENCFF794ABW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF094LJD bigBed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF335ADU 1346036 ENCODE Processing Pipeline 6b9a769b7b2c844155677764852fdbe1 https://www.encodeproject.org/files/ENCFF094LJD/@@download/ENCFF094LJD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF312OPS bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 1137687106 ENCODE Processing Pipeline e77d26fb5eda556f2e4acfae5f2a6269 https://www.encodeproject.org/files/ENCFF312OPS/@@download/ENCFF312OPS.bigWig hg19 released mild to moderate bottlenecking ENCFF930KEW bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 1061062263 ENCODE Processing Pipeline 38813fa4ca714a1576d2d0361cdf872e https://www.encodeproject.org/files/ENCFF930KEW/@@download/ENCFF930KEW.bigWig hg19 released mild to moderate bottlenecking ENCFF714IDV bigWig signal p-value ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF093ATD, ENCFF287SKW, ENCFF869BJB, ENCFF941TZZ 1865768445 ENCODE Processing Pipeline 5d2429b9ac3c762f0b144edfb40471e7 https://www.encodeproject.org/files/ENCFF714IDV/@@download/ENCFF714IDV.bigWig hg19 released mild to moderate bottlenecking ENCFF505VHQ bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 1151258932 ENCODE Processing Pipeline f5d4bdb4d4c10ebbf83d5d70376c6fd9 https://www.encodeproject.org/files/ENCFF505VHQ/@@download/ENCFF505VHQ.bigWig hg19 released mild to moderate bottlenecking ENCFF261ETE bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 982406254 ENCODE Processing Pipeline a09a7f72da2850ebae15a0c45ecd9a10 https://www.encodeproject.org/files/ENCFF261ETE/@@download/ENCFF261ETE.bigWig hg19 released mild to moderate bottlenecking ENCFF837DPP bigWig fold change over control ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF093ATD, ENCFF287SKW, ENCFF869BJB, ENCFF941TZZ 2055771568 ENCODE Processing Pipeline f9320e4ae4b780e4d51072ce7f050175 https://www.encodeproject.org/files/ENCFF837DPP/@@download/ENCFF837DPP.bigWig hg19 released mild to moderate bottlenecking ENCFF161FIT bigBed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF618KHI 833493 ENCODE Processing Pipeline 5440ccafd01c3cccaf15696c2a18486b https://www.encodeproject.org/files/ENCFF161FIT/@@download/ENCFF161FIT.bigBed hg19 released mild to moderate bottlenecking ENCFF221NJD bigBed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF020GMZ 1306030 ENCODE Processing Pipeline 104ce0241e552130c680df103d36b5b7 https://www.encodeproject.org/files/ENCFF221NJD/@@download/ENCFF221NJD.bigBed hg19 released mild to moderate bottlenecking ENCFF049YTC bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 6575051 ENCODE Processing Pipeline 48fe60fc518d56b3898230f0ff2c8eb2 https://www.encodeproject.org/files/ENCFF049YTC/@@download/ENCFF049YTC.bed.gz hg19 released mild to moderate bottlenecking ENCFF197JKK bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF825QFX 13423278 ENCODE Processing Pipeline f44154979999838463cf5f1e5c75e35f https://www.encodeproject.org/files/ENCFF197JKK/@@download/ENCFF197JKK.bigBed hg19 released mild to moderate bottlenecking ENCFF020GMZ bed narrowPeak optimal idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF049YTC, ENCFF583BIS, ENCFF825QFX 624856 ENCODE Processing Pipeline 12bb6684c3e7567ee87c6ac3c7b4af68 https://www.encodeproject.org/files/ENCFF020GMZ/@@download/ENCFF020GMZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF583BIS bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 6237077 ENCODE Processing Pipeline e4c678d2343369f34a9f466600698885 https://www.encodeproject.org/files/ENCFF583BIS/@@download/ENCFF583BIS.bed.gz hg19 released mild to moderate bottlenecking ENCFF825QFX bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF093ATD, ENCFF287SKW, ENCFF869BJB, ENCFF941TZZ 7097520 ENCODE Processing Pipeline b8edfeb454745c14c293da70cd95aca7 https://www.encodeproject.org/files/ENCFF825QFX/@@download/ENCFF825QFX.bed.gz hg19 released mild to moderate bottlenecking ENCFF618KHI bed narrowPeak conservative idr thresholded peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF049YTC, ENCFF583BIS, ENCFF825QFX 472332 ENCODE Processing Pipeline a748bf20f034d371da0956242b448c51 https://www.encodeproject.org/files/ENCFF618KHI/@@download/ENCFF618KHI.bed.gz hg19 released mild to moderate bottlenecking ENCFF370LAY bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF049YTC 13277166 ENCODE Processing Pipeline f974ab49a7c123f40163ebc0ec4a00e0 https://www.encodeproject.org/files/ENCFF370LAY/@@download/ENCFF370LAY.bigBed hg19 released mild to moderate bottlenecking ENCFF443EWG bigBed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF583BIS 13545182 ENCODE Processing Pipeline 56a2ab6289a4920a617079baf491704a https://www.encodeproject.org/files/ENCFF443EWG/@@download/ENCFF443EWG.bigBed hg19 released mild to moderate bottlenecking ENCFF904ZYJ fastq reads ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF016JYN 2683490457 Michael Snyder, Stanford 6883f04adc7807b8c6dbc0a27c4dc8b4 https://www.encodeproject.org/files/ENCFF904ZYJ/@@download/ENCFF904ZYJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF016JYN fastq reads ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF904ZYJ 2706379896 Michael Snyder, Stanford 3c5781582fd85951997791ef38025d82 https://www.encodeproject.org/files/ENCFF016JYN/@@download/ENCFF016JYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF223QHU bam unfiltered alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF016JYN, ENCFF807MUK, ENCFF904ZYJ 5887537255 ENCODE Processing Pipeline 34d3126f10112ce9e7605193265002b1 https://www.encodeproject.org/files/ENCFF223QHU/@@download/ENCFF223QHU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF944ZNY bam unfiltered alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF016JYN, ENCFF643CGH, ENCFF904ZYJ 5891281189 ENCODE Processing Pipeline 681a0ea658cfe7a13347059116c0e9bb https://www.encodeproject.org/files/ENCFF944ZNY/@@download/ENCFF944ZNY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF445HJT bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF016JYN, ENCFF807MUK, ENCFF904ZYJ 4902283071 ENCODE Processing Pipeline c35489a16fb1b12f6dd0e0ab0b3c5453 https://www.encodeproject.org/files/ENCFF445HJT/@@download/ENCFF445HJT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF590MQC bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF016JYN, ENCFF643CGH, ENCFF904ZYJ 4904004857 ENCODE Processing Pipeline e7c4fdffe96361ce869789add5b3410a https://www.encodeproject.org/files/ENCFF590MQC/@@download/ENCFF590MQC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF664VSX bigWig fold change over control ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF590MQC 1437726166 ENCODE Processing Pipeline 7b59d35c19798ab670163a6f4dcbe41b https://www.encodeproject.org/files/ENCFF664VSX/@@download/ENCFF664VSX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF842XOL bigWig signal p-value ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF590MQC 1422103738 ENCODE Processing Pipeline 21dec80ec3177de193cd3febbb5e571a https://www.encodeproject.org/files/ENCFF842XOL/@@download/ENCFF842XOL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF500RLR bigWig signal p-value ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF445HJT 1304457241 ENCODE Processing Pipeline dcbf53bd47271e001bfb216de0447da5 https://www.encodeproject.org/files/ENCFF500RLR/@@download/ENCFF500RLR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF447NAV bigBed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF628RDJ 11401459 ENCODE Processing Pipeline 037d2b10e462baacd5ae3fa0bade35e7 https://www.encodeproject.org/files/ENCFF447NAV/@@download/ENCFF447NAV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF279ZEZ bigWig fold change over control ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF445HJT 1437410662 ENCODE Processing Pipeline d348094847b5c233e987dbeaad1c91dd https://www.encodeproject.org/files/ENCFF279ZEZ/@@download/ENCFF279ZEZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF745UIZ bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF445HJT 6676603 ENCODE Processing Pipeline 777d304afa134dfd1e3ac5ae452290be https://www.encodeproject.org/files/ENCFF745UIZ/@@download/ENCFF745UIZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF381PTA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF001TDO, ENCFF745UIZ 190745 ENCODE Processing Pipeline 0645d792aea1a709ecca351fe00fa12e https://www.encodeproject.org/files/ENCFF381PTA/@@download/ENCFF381PTA.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF200UZE bigBed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF745UIZ 11396140 ENCODE Processing Pipeline 01320845a51972dbe96e3b390d5da514 https://www.encodeproject.org/files/ENCFF200UZE/@@download/ENCFF200UZE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF707OOW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF381PTA 410490 ENCODE Processing Pipeline e5519a384748d1c237c2e80caa68c6f3 https://www.encodeproject.org/files/ENCFF707OOW/@@download/ENCFF707OOW.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF044HIR bam unfiltered alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF152PSJ, ENCFF643CGH, ENCFF956EJH 5391446262 ENCODE Processing Pipeline f6388a5524149973cbff4c155c9acf90 https://www.encodeproject.org/files/ENCFF044HIR/@@download/ENCFF044HIR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF399LLP bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF152PSJ, ENCFF643CGH, ENCFF956EJH 3662303715 ENCODE Processing Pipeline a95d78e5c1220f81b7c92dcc7d40f88b https://www.encodeproject.org/files/ENCFF399LLP/@@download/ENCFF399LLP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF870BIC bam unfiltered alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF152PSJ, ENCFF807MUK, ENCFF956EJH 5389073303 ENCODE Processing Pipeline adf7279b633e60688c272b5a4ce7272d https://www.encodeproject.org/files/ENCFF870BIC/@@download/ENCFF870BIC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF574BHM bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF152PSJ, ENCFF807MUK, ENCFF956EJH 3662946721 ENCODE Processing Pipeline 087c8f4fe9f9f3c6963027605389e4ad https://www.encodeproject.org/files/ENCFF574BHM/@@download/ENCFF574BHM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF956EJH fastq reads ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF152PSJ 2974505201 Michael Snyder, Stanford 6e39a2897b16f8b866c50ea03154ac35 https://www.encodeproject.org/files/ENCFF956EJH/@@download/ENCFF956EJH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF152PSJ fastq reads ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF956EJH 2963260766 Michael Snyder, Stanford 6be3e6f1173c434c63040b058252f043 https://www.encodeproject.org/files/ENCFF152PSJ/@@download/ENCFF152PSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF680RRS bigWig signal p-value ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF574BHM 1164683570 ENCODE Processing Pipeline c51ef09730b0c0d75c7101992c759d0c https://www.encodeproject.org/files/ENCFF680RRS/@@download/ENCFF680RRS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF518RNB bigWig signal p-value ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF399LLP 1259793472 ENCODE Processing Pipeline cd7565e58c81824a93abd9705fd89616 https://www.encodeproject.org/files/ENCFF518RNB/@@download/ENCFF518RNB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF681ORM bigWig fold change over control ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF399LLP, ENCFF590MQC 1904873392 ENCODE Processing Pipeline 21ff44d41e6b19b78edabd119cbe1a20 https://www.encodeproject.org/files/ENCFF681ORM/@@download/ENCFF681ORM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF867GKH bigWig signal p-value ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF445HJT, ENCFF574BHM 1397921219 ENCODE Processing Pipeline 071a36051e78837c0b7ffc33bbf144be https://www.encodeproject.org/files/ENCFF867GKH/@@download/ENCFF867GKH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF766TOP bigWig fold change over control ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF399LLP 1218841319 ENCODE Processing Pipeline da6eb7bbd596e2326187fc024a1fbc9d https://www.encodeproject.org/files/ENCFF766TOP/@@download/ENCFF766TOP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF949TDO bigWig fold change over control ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF445HJT, ENCFF574BHM 1904422185 ENCODE Processing Pipeline 5b59d04390d5a8e14fbab49d1a805c7e https://www.encodeproject.org/files/ENCFF949TDO/@@download/ENCFF949TDO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF529UMW bigWig signal p-value ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF399LLP, ENCFF590MQC 1812523971 ENCODE Processing Pipeline 5a82a8be306d075dc30c5cd52e1bb585 https://www.encodeproject.org/files/ENCFF529UMW/@@download/ENCFF529UMW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF351AZB bigWig fold change over control ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF574BHM 1231379466 ENCODE Processing Pipeline 605c979861af61f1bb2559339c33ace1 https://www.encodeproject.org/files/ENCFF351AZB/@@download/ENCFF351AZB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF428CYD bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF574BHM 6958018 ENCODE Processing Pipeline 945844f7df837b5e1a17a7aeab2228a5 https://www.encodeproject.org/files/ENCFF428CYD/@@download/ENCFF428CYD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF264HLG bed narrowPeak conservative idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF354DQU, ENCFF428CYD, ENCFF745UIZ 234276 ENCODE Processing Pipeline 5832d7f02b8e66e7e84c61dcfab72024 https://www.encodeproject.org/files/ENCFF264HLG/@@download/ENCFF264HLG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF254AOV bigBed narrowPeak optimal idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF439XSW 814008 ENCODE Processing Pipeline b9b325c4f7a9ce0f2b9a820203a7937e https://www.encodeproject.org/files/ENCFF254AOV/@@download/ENCFF254AOV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF186DWJ bigBed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF962NIV 13308399 ENCODE Processing Pipeline 1eafcf0ab4c95feab06d007a79beedcf https://www.encodeproject.org/files/ENCFF186DWJ/@@download/ENCFF186DWJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF050LPP bigBed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF354DQU 13284648 ENCODE Processing Pipeline 9ee7b77522a8f3e423336c80173727a4 https://www.encodeproject.org/files/ENCFF050LPP/@@download/ENCFF050LPP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF628RDJ bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF590MQC 6671890 ENCODE Processing Pipeline aad4ace42a3346a46ab70fc25f6a1821 https://www.encodeproject.org/files/ENCFF628RDJ/@@download/ENCFF628RDJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF766SQF bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF399LLP 6950853 ENCODE Processing Pipeline f096fca789ca0108c00e5620d3964693 https://www.encodeproject.org/files/ENCFF766SQF/@@download/ENCFF766SQF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF354DQU bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF445HJT, ENCFF574BHM 7178731 ENCODE Processing Pipeline 6be397897d2f487f35651edf9cdef368 https://www.encodeproject.org/files/ENCFF354DQU/@@download/ENCFF354DQU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF537CQV bigBed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF428CYD 13266114 ENCODE Processing Pipeline 0df2458bbb9977c5b11d6c8f45814747 https://www.encodeproject.org/files/ENCFF537CQV/@@download/ENCFF537CQV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF896DHV bigBed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF766SQF 13283699 ENCODE Processing Pipeline 6588a4607825028c60f68316a3eadeb4 https://www.encodeproject.org/files/ENCFF896DHV/@@download/ENCFF896DHV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF610NJD bigBed narrowPeak conservative idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF264HLG 473644 ENCODE Processing Pipeline 08cdf6e32025bef670dcd13072d26a49 https://www.encodeproject.org/files/ENCFF610NJD/@@download/ENCFF610NJD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF439XSW bed narrowPeak optimal idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF354DQU, ENCFF428CYD, ENCFF745UIZ 373242 ENCODE Processing Pipeline 4673c6eb46e1586535bd6b710bbd59ff https://www.encodeproject.org/files/ENCFF439XSW/@@download/ENCFF439XSW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF962NIV bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF399LLP, ENCFF590MQC 7174139 ENCODE Processing Pipeline fabfd710778b16c8f7ec1105fd798c90 https://www.encodeproject.org/files/ENCFF962NIV/@@download/ENCFF962NIV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF071HGO bigBed narrowPeak optimal idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF886WTI 813909 ENCODE Processing Pipeline d82a676d64685e0bfd817dfd3ea6b907 https://www.encodeproject.org/files/ENCFF071HGO/@@download/ENCFF071HGO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF198LIQ bed narrowPeak conservative idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF628RDJ, ENCFF766SQF, ENCFF962NIV 235280 ENCODE Processing Pipeline 9c592d4dd36759fda5e945e7f2f891ba https://www.encodeproject.org/files/ENCFF198LIQ/@@download/ENCFF198LIQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF892GNZ bigBed narrowPeak conservative idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF198LIQ 475421 ENCODE Processing Pipeline e0394d717ff6225a99ffddce4e4641d4 https://www.encodeproject.org/files/ENCFF892GNZ/@@download/ENCFF892GNZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF886WTI bed narrowPeak optimal idr thresholded peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF628RDJ, ENCFF766SQF, ENCFF962NIV 371452 ENCODE Processing Pipeline c57b037abf9ec4e51c6d768d1e42ed93 https://www.encodeproject.org/files/ENCFF886WTI/@@download/ENCFF886WTI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF774LQB fastq reads ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF611LYK 1467009912 Michael Snyder, Stanford cfac956dfff37f082ab414f77f0642d7 SRA:SRR6212931 https://www.encodeproject.org/files/ENCFF774LQB/@@download/ENCFF774LQB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released low read depth ENCFF580EKN fastq reads ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF482CBA 1593076445 Michael Snyder, Stanford 1b245b8d883e5fe06f5940bb993d191b SRA:SRR6212932 https://www.encodeproject.org/files/ENCFF580EKN/@@download/ENCFF580EKN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released low read depth ENCFF482CBA fastq reads ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF580EKN 1635265172 Michael Snyder, Stanford c4dbb00d03259d0c07c74d63b937f155 SRA:SRR6212932 https://www.encodeproject.org/files/ENCFF482CBA/@@download/ENCFF482CBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released low read depth ENCFF611LYK fastq reads ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF774LQB 1503566963 Michael Snyder, Stanford 4774e4622ceebbeec9e8eb5f91af07fd SRA:SRR6212931 https://www.encodeproject.org/files/ENCFF611LYK/@@download/ENCFF611LYK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released low read depth ENCFF787PBQ bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF611LYK, ENCFF774LQB, ENCFF807MUK 2922772549 ENCODE Processing Pipeline 7111a72087a9b34f3d23c4c6952aea9f https://www.encodeproject.org/files/ENCFF787PBQ/@@download/ENCFF787PBQ.bam hg19 released low read depth ENCFF287PVI bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF482CBA, ENCFF580EKN, ENCFF807MUK 3082523942 ENCODE Processing Pipeline 38527d4d21c4569a77d748309685161a https://www.encodeproject.org/files/ENCFF287PVI/@@download/ENCFF287PVI.bam hg19 released low read depth ENCFF255FPM bigWig signal p-value ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF287PVI, ENCFF583FAG 976218755 ENCODE Processing Pipeline 9fcfcd7fc491c6b2a24fad038362c17e https://www.encodeproject.org/files/ENCFF255FPM/@@download/ENCFF255FPM.bigWig hg19 released low read depth ENCFF723DLM bigWig signal p-value ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF787PBQ 812469476 ENCODE Processing Pipeline a8f962ccbe9175fe16e4d330720ce743 https://www.encodeproject.org/files/ENCFF723DLM/@@download/ENCFF723DLM.bigWig hg19 released low read depth ENCFF488HLY bigWig signal p-value ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF049MPQ, ENCFF287PVI, ENCFF583FAG, ENCFF787PBQ 1730747829 ENCODE Processing Pipeline fe87fafdfc4701d4265f413a61846b46 https://www.encodeproject.org/files/ENCFF488HLY/@@download/ENCFF488HLY.bigWig hg19 released low read depth ENCFF688GOZ bigWig fold change over control ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF287PVI, ENCFF583FAG 898763456 ENCODE Processing Pipeline 84609882c465a7d0b487594a0debb471 https://www.encodeproject.org/files/ENCFF688GOZ/@@download/ENCFF688GOZ.bigWig hg19 released low read depth ENCFF081LSG bigWig fold change over control ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF787PBQ 903244669 ENCODE Processing Pipeline d917cb9727642019eb1a77397602619b https://www.encodeproject.org/files/ENCFF081LSG/@@download/ENCFF081LSG.bigWig hg19 released low read depth ENCFF561UXI bigWig fold change over control ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF049MPQ, ENCFF287PVI, ENCFF583FAG, ENCFF787PBQ 1802447033 ENCODE Processing Pipeline a5b9fa2bdf5ff8ed801fef9cc334e1cf https://www.encodeproject.org/files/ENCFF561UXI/@@download/ENCFF561UXI.bigWig hg19 released low read depth ENCFF017WRM bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF287PVI, ENCFF583FAG 6329760 ENCODE Processing Pipeline f77ad2aefa143dbab754758f42ebc6cb https://www.encodeproject.org/files/ENCFF017WRM/@@download/ENCFF017WRM.bed.gz hg19 released low read depth ENCFF565ZVL bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF787PBQ 6374326 ENCODE Processing Pipeline 4b9eb0d586266256c48f0eb1369029f9 https://www.encodeproject.org/files/ENCFF565ZVL/@@download/ENCFF565ZVL.bed.gz hg19 released low read depth ENCFF031CJZ bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF049MPQ, ENCFF287PVI, ENCFF583FAG, ENCFF787PBQ 7115838 ENCODE Processing Pipeline 826faafb6538ec1e1ea4705dcc24d2f7 https://www.encodeproject.org/files/ENCFF031CJZ/@@download/ENCFF031CJZ.bed.gz hg19 released low read depth ENCFF458ICY bigBed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF017WRM 11382992 ENCODE Processing Pipeline 7eb720b77423782cf5a2bc787973b45d https://www.encodeproject.org/files/ENCFF458ICY/@@download/ENCFF458ICY.bigBed hg19 released low read depth ENCFF818CQZ bigBed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF031CJZ 13784240 ENCODE Processing Pipeline 77ca7dbc69645fc65ba9c34173adb99f https://www.encodeproject.org/files/ENCFF818CQZ/@@download/ENCFF818CQZ.bigBed hg19 released low read depth ENCFF898OVP bigBed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF565ZVL 11466465 ENCODE Processing Pipeline e534800c256453ae25ee3dbb1a8bc5ad https://www.encodeproject.org/files/ENCFF898OVP/@@download/ENCFF898OVP.bigBed hg19 released low read depth ENCFF044NZP bam unfiltered alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF611LYK, ENCFF643CGH, ENCFF774LQB 3346692140 ENCODE Processing Pipeline 525b77df7471bac7f0686a4843f46660 https://www.encodeproject.org/files/ENCFF044NZP/@@download/ENCFF044NZP.bam GRCh38 released low read depth ENCFF159MOK bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF611LYK, ENCFF643CGH, ENCFF774LQB 2926761962 ENCODE Processing Pipeline 3d06ba66cbf71671d7e9e4dd16875934 https://www.encodeproject.org/files/ENCFF159MOK/@@download/ENCFF159MOK.bam GRCh38 released low read depth ENCFF331PWP bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF482CBA, ENCFF580EKN, ENCFF643CGH 3086311102 ENCODE Processing Pipeline 495968d400f798c3cc81a50ce1f5a5ba https://www.encodeproject.org/files/ENCFF331PWP/@@download/ENCFF331PWP.bam GRCh38 released low read depth ENCFF095QFL bam unfiltered alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF482CBA, ENCFF580EKN, ENCFF643CGH 3581951755 ENCODE Processing Pipeline 81bb150718b78f19c79094d83fdf419f https://www.encodeproject.org/files/ENCFF095QFL/@@download/ENCFF095QFL.bam GRCh38 released low read depth ENCFF024IKB bigWig signal p-value ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF331PWP, ENCFF426RDP 806008881 ENCODE Processing Pipeline 716938bca4c3521548f92f134af166ac https://www.encodeproject.org/files/ENCFF024IKB/@@download/ENCFF024IKB.bigWig GRCh38 released low read depth ENCFF574TJZ bigWig signal p-value ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF159MOK, ENCFF291AFY 838233526 ENCODE Processing Pipeline fbb1658f226688e511777e5a94c39fea https://www.encodeproject.org/files/ENCFF574TJZ/@@download/ENCFF574TJZ.bigWig GRCh38 released low read depth ENCFF099YQL bigWig signal p-value ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF159MOK, ENCFF291AFY, ENCFF331PWP, ENCFF426RDP 1633454930 ENCODE Processing Pipeline c4b6958d40116e47c6970105ba083221 https://www.encodeproject.org/files/ENCFF099YQL/@@download/ENCFF099YQL.bigWig GRCh38 released low read depth ENCFF769VTB bigWig fold change over control ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF159MOK, ENCFF291AFY 905394256 ENCODE Processing Pipeline 51a38e748b63f854ccc2c6b39b4fb728 https://www.encodeproject.org/files/ENCFF769VTB/@@download/ENCFF769VTB.bigWig GRCh38 released low read depth ENCFF220AWN bigWig fold change over control ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF331PWP, ENCFF426RDP 898698055 ENCODE Processing Pipeline 0d3d4ab6d88f88a6b5236a028497323c https://www.encodeproject.org/files/ENCFF220AWN/@@download/ENCFF220AWN.bigWig GRCh38 released low read depth ENCFF904VIO bigBed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF361WHJ 13795974 ENCODE Processing Pipeline 5262c73983f18aeb19d20a5897d2c510 https://www.encodeproject.org/files/ENCFF904VIO/@@download/ENCFF904VIO.bigBed GRCh38 released low read depth ENCFF360BQT bigBed narrowPeak conservative idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF728TJB 1062113 ENCODE Processing Pipeline ba573ebd6c61d4fc0f65b7bc3fd2cd02 https://www.encodeproject.org/files/ENCFF360BQT/@@download/ENCFF360BQT.bigBed GRCh38 released low read depth ENCFF218RSB bigBed narrowPeak optimal idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF160RLI 1276882 ENCODE Processing Pipeline c62c36f2dbb3d28f4c97195ef6cc1cfb https://www.encodeproject.org/files/ENCFF218RSB/@@download/ENCFF218RSB.bigBed GRCh38 released low read depth ENCFF447LMI bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF159MOK, ENCFF291AFY 6171988 ENCODE Processing Pipeline 1bc06b269d3c109a622c57deee34dd14 https://www.encodeproject.org/files/ENCFF447LMI/@@download/ENCFF447LMI.bed.gz GRCh38 released low read depth ENCFF332TWR bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF331PWP, ENCFF426RDP 6213573 ENCODE Processing Pipeline cb52da1c3a0a10da1eafd110b1bf5489 https://www.encodeproject.org/files/ENCFF332TWR/@@download/ENCFF332TWR.bed.gz GRCh38 released low read depth ENCFF008ABX bigWig fold change over control ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF159MOK, ENCFF291AFY, ENCFF331PWP, ENCFF426RDP 1796168451 ENCODE Processing Pipeline 7daa47eff79c9bd9c5d37a659c5bd8ee https://www.encodeproject.org/files/ENCFF008ABX/@@download/ENCFF008ABX.bigWig GRCh38 released low read depth ENCFF361WHJ bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF159MOK, ENCFF291AFY, ENCFF331PWP, ENCFF426RDP 7074805 ENCODE Processing Pipeline 26db6398b12129ce676883fd70381c23 https://www.encodeproject.org/files/ENCFF361WHJ/@@download/ENCFF361WHJ.bed.gz GRCh38 released low read depth ENCFF640RAL bigBed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF332TWR 11428900 ENCODE Processing Pipeline fed4ec6ac1a24a1c56b44f888e1bcfb3 https://www.encodeproject.org/files/ENCFF640RAL/@@download/ENCFF640RAL.bigBed GRCh38 released low read depth ENCFF582WSW bigBed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF447LMI 11455350 ENCODE Processing Pipeline ee4ba58f413c64c73cc7f6cca186c386 https://www.encodeproject.org/files/ENCFF582WSW/@@download/ENCFF582WSW.bigBed GRCh38 released low read depth ENCFF728TJB bed narrowPeak conservative idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF332TWR, ENCFF361WHJ, ENCFF419RSJ, ENCFF447LMI 584440 ENCODE Processing Pipeline 71be9ac2da59766ced49498f78daa8dc https://www.encodeproject.org/files/ENCFF728TJB/@@download/ENCFF728TJB.bed.gz GRCh38 released low read depth ENCFF160RLI bed narrowPeak optimal idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF332TWR, ENCFF361WHJ, ENCFF419RSJ, ENCFF447LMI 745881 ENCODE Processing Pipeline 214b996f13ead3df97b7cf3705e3c3b8 https://www.encodeproject.org/files/ENCFF160RLI/@@download/ENCFF160RLI.bed.gz GRCh38 released low read depth ENCFF397PHM bam unfiltered alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF482CBA, ENCFF580EKN, ENCFF807MUK 3575610295 ENCODE Processing Pipeline b2426c7ffb0ce10e2bc8dd9598525a1b https://www.encodeproject.org/files/ENCFF397PHM/@@download/ENCFF397PHM.bam hg19 released low read depth ENCFF980ITN bam unfiltered alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF611LYK, ENCFF774LQB, ENCFF807MUK 3340111876 ENCODE Processing Pipeline 5afbb63e2ae57dc9d488907953e858e2 https://www.encodeproject.org/files/ENCFF980ITN/@@download/ENCFF980ITN.bam hg19 released low read depth ENCFF501EUX bigBed narrowPeak conservative idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF856FVT 979047 ENCODE Processing Pipeline 02d86ea8326ca524ff75c7f2998e1a4d https://www.encodeproject.org/files/ENCFF501EUX/@@download/ENCFF501EUX.bigBed hg19 released low read depth ENCFF596OJV bed narrowPeak optimal idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF017WRM, ENCFF031CJZ, ENCFF565ZVL 661291 ENCODE Processing Pipeline 54fbe703b1a67e989d62a1761ae130d5 https://www.encodeproject.org/files/ENCFF596OJV/@@download/ENCFF596OJV.bed.gz hg19 released low read depth ENCFF840JKR bigBed narrowPeak optimal idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF596OJV 1142945 ENCODE Processing Pipeline 0dd1901d4ca9609bc38c7de77fbf3454 https://www.encodeproject.org/files/ENCFF840JKR/@@download/ENCFF840JKR.bigBed hg19 released low read depth ENCFF856FVT bed narrowPeak conservative idr thresholded peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF017WRM, ENCFF031CJZ, ENCFF565ZVL 529825 ENCODE Processing Pipeline 89b53fbcf02d110a895f639a9747e366 https://www.encodeproject.org/files/ENCFF856FVT/@@download/ENCFF856FVT.bed.gz hg19 released low read depth ENCFF002EWC fastq reads ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 1 36 single-ended 1012692760 Michael Snyder, Stanford 953d265e37ddae1b741117ed9e4ffdc3 SRA:SRR5111248 https://www.encodeproject.org/files/ENCFF002EWC/@@download/ENCFF002EWC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF584LXI/ released low read length, mild to moderate bottlenecking, low read depth ENCFF002EWD fastq reads ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 1 36 single-ended 706197855 Michael Snyder, Stanford bb29f37d35718974d70a8e76f8b51ba9 SRA:SRR5111249 https://www.encodeproject.org/files/ENCFF002EWD/@@download/ENCFF002EWD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF492DKQ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF851GPH bam unfiltered alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 36 ENCFF002EWD, ENCFF643CGH 950049613 ENCODE Processing Pipeline 29d404f2c71a3058b4280dba086d6e83 https://www.encodeproject.org/files/ENCFF851GPH/@@download/ENCFF851GPH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF461GBT bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EWC, ENCFF643CGH 776074913 ENCODE Processing Pipeline 311bbd17799b6573d3ab0f770fca3fc7 https://www.encodeproject.org/files/ENCFF461GBT/@@download/ENCFF461GBT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF071JVO bam unfiltered alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EWC, ENCFF643CGH 1224866609 ENCODE Processing Pipeline 4f6448da362dc94f67ba80853b5aaebb https://www.encodeproject.org/files/ENCFF071JVO/@@download/ENCFF071JVO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF467POD bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 36 ENCFF002EWD, ENCFF643CGH 521718271 ENCODE Processing Pipeline e3399c47a2586a410eb838f0d14d3447 https://www.encodeproject.org/files/ENCFF467POD/@@download/ENCFF467POD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF135OXN bam unfiltered alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 36 ENCFF002EWD, ENCFF807MUK 944337899 ENCODE Processing Pipeline 035e4ae04b9ebb9fbda28966e0a590ae https://www.encodeproject.org/files/ENCFF135OXN/@@download/ENCFF135OXN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF764TDM bam unfiltered alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EWC, ENCFF807MUK 1216299345 ENCODE Processing Pipeline 07a312db2440ca8766df94d0e5e763f9 https://www.encodeproject.org/files/ENCFF764TDM/@@download/ENCFF764TDM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF192PYQ bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 36 ENCFF002EWD, ENCFF807MUK 522078556 ENCODE Processing Pipeline f7d4922838165066e3fd3ff1a61c4303 https://www.encodeproject.org/files/ENCFF192PYQ/@@download/ENCFF192PYQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF844JHW bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EWC, ENCFF807MUK 776509522 ENCODE Processing Pipeline 73d621af138ddd1e40fdc622fce8344f https://www.encodeproject.org/files/ENCFF844JHW/@@download/ENCFF844JHW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF704ALE bigWig signal p-value ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF844JHW, ENCFF880YHS 568055365 ENCODE Processing Pipeline a6d7e55197fb88f827b09c022a487e84 https://www.encodeproject.org/files/ENCFF704ALE/@@download/ENCFF704ALE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF822OVZ bigWig signal p-value ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF192PYQ, ENCFF485QJI, ENCFF844JHW, ENCFF880YHS 946896332 ENCODE Processing Pipeline 909ecca7baae00a924bf242e92d934a8 https://www.encodeproject.org/files/ENCFF822OVZ/@@download/ENCFF822OVZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF111TKI bigWig fold change over control ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF192PYQ, ENCFF485QJI 335211551 ENCODE Processing Pipeline 0b2ca02183a5d1b783c2736f2a6ac631 https://www.encodeproject.org/files/ENCFF111TKI/@@download/ENCFF111TKI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF896GTT bigWig fold change over control ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF844JHW, ENCFF880YHS 431945467 ENCODE Processing Pipeline 00ac6e8638d89fd022e065461944387f https://www.encodeproject.org/files/ENCFF896GTT/@@download/ENCFF896GTT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF524KJO bigWig signal p-value ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF192PYQ, ENCFF485QJI 516876622 ENCODE Processing Pipeline fcd4f19df569e3d329fc68b1ebf83869 https://www.encodeproject.org/files/ENCFF524KJO/@@download/ENCFF524KJO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF777LPB bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF192PYQ, ENCFF485QJI, ENCFF844JHW, ENCFF880YHS 5749535 ENCODE Processing Pipeline a901df55d9b2a2d1cc0861107825fd20 https://www.encodeproject.org/files/ENCFF777LPB/@@download/ENCFF777LPB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF010PGS bigWig fold change over control ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF192PYQ, ENCFF485QJI, ENCFF844JHW, ENCFF880YHS 885402454 ENCODE Processing Pipeline ea7507e1b2d8ba940a792d7c72a20f82 https://www.encodeproject.org/files/ENCFF010PGS/@@download/ENCFF010PGS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF917EWZ bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF844JHW, ENCFF880YHS 4694335 ENCODE Processing Pipeline 6979d042bfb430578e2aa0cfef2a976e https://www.encodeproject.org/files/ENCFF917EWZ/@@download/ENCFF917EWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF950ARZ bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF192PYQ, ENCFF485QJI 4249104 ENCODE Processing Pipeline 3775d4e1578db9178ed9b546378adc2d https://www.encodeproject.org/files/ENCFF950ARZ/@@download/ENCFF950ARZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF336ACC bigBed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF917EWZ 11141611 ENCODE Processing Pipeline 25822edb9663aaa84d868acd8d9558ef https://www.encodeproject.org/files/ENCFF336ACC/@@download/ENCFF336ACC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF103FON bigBed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF950ARZ 10771187 ENCODE Processing Pipeline 6ebd122f2b3d9d8239051f4c17bcdfc6 https://www.encodeproject.org/files/ENCFF103FON/@@download/ENCFF103FON.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF113AAF bigBed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF777LPB 11698399 ENCODE Processing Pipeline 8c5e7a49509c6bfee7f49a10d9955479 https://www.encodeproject.org/files/ENCFF113AAF/@@download/ENCFF113AAF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF873XPS bigBed narrowPeak conservative idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF258NJD 412396 ENCODE Processing Pipeline 3be8f60419b66e0e76541c2737c05562 https://www.encodeproject.org/files/ENCFF873XPS/@@download/ENCFF873XPS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF258NJD bed narrowPeak conservative idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF001TDO, ENCFF777LPB, ENCFF917EWZ, ENCFF950ARZ 217137 ENCODE Processing Pipeline 5f569f8a7e84121713d91713cc7adf43 https://www.encodeproject.org/files/ENCFF258NJD/@@download/ENCFF258NJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF641RNZ bed narrowPeak optimal idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF001TDO, ENCFF777LPB, ENCFF917EWZ, ENCFF950ARZ 275301 ENCODE Processing Pipeline 23071fd9061c37180996a41abc7793ae https://www.encodeproject.org/files/ENCFF641RNZ/@@download/ENCFF641RNZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF829RKL bigBed narrowPeak optimal idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF641RNZ 483998 ENCODE Processing Pipeline c6073de7a475c20678e8206aaa064b18 https://www.encodeproject.org/files/ENCFF829RKL/@@download/ENCFF829RKL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF570BRK bigWig signal p-value ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF195PNZ, ENCFF461GBT 608248053 ENCODE Processing Pipeline eaeacc9dd5b51e2ef98420a9b9d82602 https://www.encodeproject.org/files/ENCFF570BRK/@@download/ENCFF570BRK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF270PLA bigWig signal p-value ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF467POD, ENCFF928IDQ 480376679 ENCODE Processing Pipeline 8ee7346137b2456f7c4cffdf7d1d2b5e https://www.encodeproject.org/files/ENCFF270PLA/@@download/ENCFF270PLA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF020HNZ bigWig signal p-value ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF195PNZ, ENCFF461GBT, ENCFF467POD, ENCFF928IDQ 946529853 ENCODE Processing Pipeline 4fb04258d68fac314194a247c1a00783 https://www.encodeproject.org/files/ENCFF020HNZ/@@download/ENCFF020HNZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF422OVP bigWig fold change over control ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF195PNZ, ENCFF461GBT 430786786 ENCODE Processing Pipeline 9ac2760c566cadf21d521b600bb7092f https://www.encodeproject.org/files/ENCFF422OVP/@@download/ENCFF422OVP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF125DGK bigWig fold change over control ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF467POD, ENCFF928IDQ 333804988 ENCODE Processing Pipeline 64f56d2afaf3ad7061d286fff56c3547 https://www.encodeproject.org/files/ENCFF125DGK/@@download/ENCFF125DGK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF323BAX bigWig fold change over control ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF195PNZ, ENCFF461GBT, ENCFF467POD, ENCFF928IDQ 884333287 ENCODE Processing Pipeline d182dd2374a9b32f98fd273b43e3bfde https://www.encodeproject.org/files/ENCFF323BAX/@@download/ENCFF323BAX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF161ZGB bigBed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF179HSQ 10498245 ENCODE Processing Pipeline 8374f2a451d5a5cfd86b7f0c462472fc https://www.encodeproject.org/files/ENCFF161ZGB/@@download/ENCFF161ZGB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF245NRF bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF195PNZ, ENCFF461GBT 4556129 ENCODE Processing Pipeline 97158514048ccb85272b2250dbf7d6bc https://www.encodeproject.org/files/ENCFF245NRF/@@download/ENCFF245NRF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF474PPT bed narrowPeak optimal idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF179HSQ, ENCFF245NRF, ENCFF372ZOT, ENCFF419RSJ 276547 ENCODE Processing Pipeline 4948d6e70d2c335a8a1b3f72dfe34e8c https://www.encodeproject.org/files/ENCFF474PPT/@@download/ENCFF474PPT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF372ZOT bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF195PNZ, ENCFF461GBT, ENCFF467POD, ENCFF928IDQ 5544819 ENCODE Processing Pipeline aa039e7dac92995328e844d3d5e17723 https://www.encodeproject.org/files/ENCFF372ZOT/@@download/ENCFF372ZOT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF097GLB bigBed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF372ZOT 11659084 ENCODE Processing Pipeline 376bc767e00717739ea73656d56f8bbd https://www.encodeproject.org/files/ENCFF097GLB/@@download/ENCFF097GLB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF487PLY bigBed narrowPeak conservative idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF806CWX 413296 ENCODE Processing Pipeline 166f65b5f1c885e9d6e4c21be57ef43d https://www.encodeproject.org/files/ENCFF487PLY/@@download/ENCFF487PLY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF179HSQ bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 ENCFF467POD, ENCFF928IDQ 4096122 ENCODE Processing Pipeline ea118632c45b1155f02f067a54a0360c https://www.encodeproject.org/files/ENCFF179HSQ/@@download/ENCFF179HSQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF071SDH bigBed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF245NRF 10971129 ENCODE Processing Pipeline 71ec303e025623e402a23b8ec027370e https://www.encodeproject.org/files/ENCFF071SDH/@@download/ENCFF071SDH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF806CWX bed narrowPeak conservative idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF179HSQ, ENCFF245NRF, ENCFF372ZOT, ENCFF419RSJ 217329 ENCODE Processing Pipeline 34db0c37c7059591407a131c94d1e3d9 https://www.encodeproject.org/files/ENCFF806CWX/@@download/ENCFF806CWX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF548LOH bigBed narrowPeak optimal idr thresholded peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2, 3 ENCFF474PPT 486036 ENCODE Processing Pipeline fa09a47f86127bc7c4e468faba8db14a https://www.encodeproject.org/files/ENCFF548LOH/@@download/ENCFF548LOH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF108LDP fastq reads ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF340SRU 5130538148 Michael Snyder, Stanford 5f3b28bf7d5d15e688567d9e60447032 SRA:SRR6212854 https://www.encodeproject.org/files/ENCFF108LDP/@@download/ENCFF108LDP.fastq.gz Illumina HiSeq 2000 /files/ENCFF204DFQ/ released antibody characterized with exemption NTR biosample ENCFF340SRU fastq reads ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF108LDP 5066346263 Michael Snyder, Stanford 2955cc7113b0c96ccbfd7db85baec46d SRA:SRR6212854 https://www.encodeproject.org/files/ENCFF340SRU/@@download/ENCFF340SRU.fastq.gz Illumina HiSeq 2000 /files/ENCFF404FJG/ released antibody characterized with exemption NTR biosample ENCFF664IIE fastq reads ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF292UBY 6354045388 Michael Snyder, Stanford 6e38f6102a58e4810ad625fbf2938b00 SRA:SRR6212855 https://www.encodeproject.org/files/ENCFF664IIE/@@download/ENCFF664IIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF873IPH/ released antibody characterized with exemption NTR biosample ENCFF292UBY fastq reads ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF664IIE 6440355966 Michael Snyder, Stanford 0d3f598913ef4f438df390d301f653ab SRA:SRR6212855 https://www.encodeproject.org/files/ENCFF292UBY/@@download/ENCFF292UBY.fastq.gz Illumina HiSeq 2000 /files/ENCFF065AHM/ released antibody characterized with exemption NTR biosample ENCFF072BWI bam unfiltered alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF108LDP, ENCFF340SRU, ENCFF807MUK 9822569311 ENCODE Processing Pipeline 48e3505ddc0b030ca9afd9cd6501ff38 https://www.encodeproject.org/files/ENCFF072BWI/@@download/ENCFF072BWI.bam hg19 released antibody characterized with exemption NTR biosample ENCFF864HWM bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF108LDP, ENCFF340SRU, ENCFF807MUK 7738823060 ENCODE Processing Pipeline 70cd5b1c099e7dd455444be1d6ff9ddc https://www.encodeproject.org/files/ENCFF864HWM/@@download/ENCFF864HWM.bam hg19 released antibody characterized with exemption NTR biosample ENCFF577USD bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF292UBY, ENCFF664IIE, ENCFF807MUK 9639703690 ENCODE Processing Pipeline bd2c96dd7b6c0fe89d2124575d26b772 https://www.encodeproject.org/files/ENCFF577USD/@@download/ENCFF577USD.bam hg19 released antibody characterized with exemption NTR biosample ENCFF886OBS bam unfiltered alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF108LDP, ENCFF340SRU, ENCFF643CGH 9827921884 ENCODE Processing Pipeline 471975eb9b95bbbc021c3f92c5566d94 https://www.encodeproject.org/files/ENCFF886OBS/@@download/ENCFF886OBS.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF598FIT bam unfiltered alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF292UBY, ENCFF664IIE, ENCFF807MUK 11945966528 ENCODE Processing Pipeline e30e7898bb0b9617c609daa58898c7c4 https://www.encodeproject.org/files/ENCFF598FIT/@@download/ENCFF598FIT.bam hg19 released antibody characterized with exemption NTR biosample ENCFF703UOS bam unfiltered alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF292UBY, ENCFF643CGH, ENCFF664IIE 11949083697 ENCODE Processing Pipeline 1ecc2b8a9d988e8371834e738dc6fade https://www.encodeproject.org/files/ENCFF703UOS/@@download/ENCFF703UOS.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF798AWZ bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF108LDP, ENCFF340SRU, ENCFF643CGH 7746680570 ENCODE Processing Pipeline 4067c8411778e5ac920d119ebf94b6a9 https://www.encodeproject.org/files/ENCFF798AWZ/@@download/ENCFF798AWZ.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF136VHO bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF292UBY, ENCFF643CGH, ENCFF664IIE 9649172996 ENCODE Processing Pipeline af0ef05d01885f1f429fd60d05f690cc https://www.encodeproject.org/files/ENCFF136VHO/@@download/ENCFF136VHO.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF762KYA bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS 7198375 ENCODE Processing Pipeline 3f17d6ce4249506359a13643c3fe7002 https://www.encodeproject.org/files/ENCFF762KYA/@@download/ENCFF762KYA.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF514OOQ bed narrowPeak optimal idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF266JIG, ENCFF694AUF, ENCFF762KYA 438040 ENCODE Processing Pipeline b1370f2dae4b9b958efb4b081343162b https://www.encodeproject.org/files/ENCFF514OOQ/@@download/ENCFF514OOQ.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF892RXH bigWig fold change over control ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF158ZFF, ENCFF775HLS, ENCFF864HWM 2328093580 ENCODE Processing Pipeline 9782a16026095ef4852ed1a26cd7ac48 https://www.encodeproject.org/files/ENCFF892RXH/@@download/ENCFF892RXH.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF959EOK bigBed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF266JIG 12656833 ENCODE Processing Pipeline 7f95014f1623ede4aba3f19e7ef28b47 https://www.encodeproject.org/files/ENCFF959EOK/@@download/ENCFF959EOK.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF867ZHI bigWig signal p-value ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF158ZFF, ENCFF775HLS, ENCFF864HWM 2221146180 ENCODE Processing Pipeline e81443d4b3a7b6cf6c319dd047c50b3a https://www.encodeproject.org/files/ENCFF867ZHI/@@download/ENCFF867ZHI.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF266JIG bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF158ZFF, ENCFF775HLS, ENCFF864HWM 7207521 ENCODE Processing Pipeline d7dddbb66cdf03e475c7f4d2d47ab5a3 https://www.encodeproject.org/files/ENCFF266JIG/@@download/ENCFF266JIG.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF588PKX bigBed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF762KYA 12572046 ENCODE Processing Pipeline 1cb9b921ac3c0f76f4bedd21a78687b4 https://www.encodeproject.org/files/ENCFF588PKX/@@download/ENCFF588PKX.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF615ZNM bed narrowPeak conservative idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF266JIG, ENCFF694AUF, ENCFF762KYA 388058 ENCODE Processing Pipeline c58e66f3a312ef7a45c9d9f9637cdc47 https://www.encodeproject.org/files/ENCFF615ZNM/@@download/ENCFF615ZNM.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF685SCI bigWig fold change over control ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS 2441598738 ENCODE Processing Pipeline de1b091545dd475f376dce0fcd937a70 https://www.encodeproject.org/files/ENCFF685SCI/@@download/ENCFF685SCI.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF645GKW bigWig signal p-value ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS, ENCFF864HWM 2289077953 ENCODE Processing Pipeline b569233dc884ca27429606014334e598 https://www.encodeproject.org/files/ENCFF645GKW/@@download/ENCFF645GKW.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF727RYY bigBed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF694AUF 12578975 ENCODE Processing Pipeline 518b66adca7e5c5e8b8e581076f99e36 https://www.encodeproject.org/files/ENCFF727RYY/@@download/ENCFF727RYY.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF468MCF bigBed narrowPeak conservative idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF615ZNM 892309 ENCODE Processing Pipeline 81e72f4176a5700989314c162a249e1a https://www.encodeproject.org/files/ENCFF468MCF/@@download/ENCFF468MCF.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF669XYE bigBed narrowPeak optimal idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF514OOQ 990593 ENCODE Processing Pipeline 3e28f8410d236cbc6f23c29c41c0d189 https://www.encodeproject.org/files/ENCFF669XYE/@@download/ENCFF669XYE.bigBed hg19 released antibody characterized with exemption NTR biosample ENCFF443WYR bigWig signal p-value ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS 2175452500 ENCODE Processing Pipeline 28dd809541f7a1d0e7bea6bd3b64cddd https://www.encodeproject.org/files/ENCFF443WYR/@@download/ENCFF443WYR.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF694AUF bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS, ENCFF864HWM 7214498 ENCODE Processing Pipeline f98a5fa4fb6dd77258031824cf06ff58 https://www.encodeproject.org/files/ENCFF694AUF/@@download/ENCFF694AUF.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF756KAI bigWig fold change over control ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS, ENCFF864HWM 4028775225 ENCODE Processing Pipeline 1ed6f374f0d5bd94f03ced5040766a3a https://www.encodeproject.org/files/ENCFF756KAI/@@download/ENCFF756KAI.bigWig hg19 released antibody characterized with exemption NTR biosample ENCFF004UVD bigWig signal p-value ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF136TIZ, ENCFF136VHO, ENCFF258IKI, ENCFF798AWZ 2458655050 ENCODE Processing Pipeline 8bd7459315591d4e76863d839bafe152 https://www.encodeproject.org/files/ENCFF004UVD/@@download/ENCFF004UVD.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF781KUM bigWig signal p-value ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF136TIZ, ENCFF136VHO, ENCFF258IKI 1992908847 ENCODE Processing Pipeline 874ea10c32b0c53602eb9ace7f476250 https://www.encodeproject.org/files/ENCFF781KUM/@@download/ENCFF781KUM.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF879LTY bigWig fold change over control ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF136TIZ, ENCFF136VHO, ENCFF258IKI 2443777730 ENCODE Processing Pipeline 6335ffa71a49ee41f03619753c1676c9 https://www.encodeproject.org/files/ENCFF879LTY/@@download/ENCFF879LTY.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF510WFJ bigWig signal p-value ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF136TIZ, ENCFF258IKI, ENCFF798AWZ 2237538713 ENCODE Processing Pipeline bf8061416806e1e13b598043ae792b44 https://www.encodeproject.org/files/ENCFF510WFJ/@@download/ENCFF510WFJ.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF010FXY bigBed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF459AED 12667806 ENCODE Processing Pipeline abd1767ca57dac820b304f7da5e80f04 https://www.encodeproject.org/files/ENCFF010FXY/@@download/ENCFF010FXY.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF474EJT bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF136TIZ, ENCFF136VHO, ENCFF258IKI, ENCFF798AWZ 7220488 ENCODE Processing Pipeline 3f09ec8ec7475cfa6dde6f485be25ad5 https://www.encodeproject.org/files/ENCFF474EJT/@@download/ENCFF474EJT.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF421WMY bigBed narrowPeak conservative idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF190DJC 894516 ENCODE Processing Pipeline 89d922194356aa7b58c0708047c4eeb6 https://www.encodeproject.org/files/ENCFF421WMY/@@download/ENCFF421WMY.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF459AED bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF136TIZ, ENCFF258IKI, ENCFF798AWZ 7209103 ENCODE Processing Pipeline 8be9aab52a3ecbcad5d3d4bbcf1440b0 https://www.encodeproject.org/files/ENCFF459AED/@@download/ENCFF459AED.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF661TSP bigBed narrowPeak optimal idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF829NNC 986031 ENCODE Processing Pipeline ba71fb8911e85e45f2d1c696f9072912 https://www.encodeproject.org/files/ENCFF661TSP/@@download/ENCFF661TSP.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF959NEZ bigWig fold change over control ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF136TIZ, ENCFF258IKI, ENCFF798AWZ 2341474397 ENCODE Processing Pipeline dabca0c8beb5cac710243131760b0d5e https://www.encodeproject.org/files/ENCFF959NEZ/@@download/ENCFF959NEZ.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF013BCN bigWig fold change over control ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF136TIZ, ENCFF136VHO, ENCFF258IKI, ENCFF798AWZ 4028326927 ENCODE Processing Pipeline 391b750ecf9432e971406add2e88787b https://www.encodeproject.org/files/ENCFF013BCN/@@download/ENCFF013BCN.bigWig GRCh38 released antibody characterized with exemption NTR biosample ENCFF935INI bigBed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF171CTM 12591506 ENCODE Processing Pipeline 1370ef83c7ff265784adb1b8f3b00772 https://www.encodeproject.org/files/ENCFF935INI/@@download/ENCFF935INI.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF171CTM bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF136TIZ, ENCFF136VHO, ENCFF258IKI 7207558 ENCODE Processing Pipeline f67b44f47bfc55d1e9221591699537db https://www.encodeproject.org/files/ENCFF171CTM/@@download/ENCFF171CTM.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF317RBG bigBed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF474EJT 12592788 ENCODE Processing Pipeline efd3ebd4aa56429261a5a6754ede916c https://www.encodeproject.org/files/ENCFF317RBG/@@download/ENCFF317RBG.bigBed GRCh38 released antibody characterized with exemption NTR biosample ENCFF190DJC bed narrowPeak conservative idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF171CTM, ENCFF419RSJ, ENCFF459AED, ENCFF474EJT 388384 ENCODE Processing Pipeline f2628cf8bb9d4058a6cad6da794492e2 https://www.encodeproject.org/files/ENCFF190DJC/@@download/ENCFF190DJC.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF829NNC bed narrowPeak optimal idr thresholded peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF171CTM, ENCFF419RSJ, ENCFF459AED, ENCFF474EJT 433703 ENCODE Processing Pipeline 44b02d2946f4360d77cfdf9f3ceeb829 https://www.encodeproject.org/files/ENCFF829NNC/@@download/ENCFF829NNC.bed.gz GRCh38 released antibody characterized with exemption NTR biosample ENCFF809ESS fastq reads ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 741672547 Xiang-Dong Fu, UCSD 3003a665dcb104df8c1cd385f5600d18 SRA:SRR6212700 https://www.encodeproject.org/files/ENCFF809ESS/@@download/ENCFF809ESS.fastq.gz Illumina HiSeq 2500 /files/ENCFF101DEV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF566HIZ fastq reads ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 942077083 Xiang-Dong Fu, UCSD 948003e1bbc300cfa681792065ecf269 SRA:SRR6212701 https://www.encodeproject.org/files/ENCFF566HIZ/@@download/ENCFF566HIZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF426URQ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF581FMD bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF809ESS 527374620 ENCODE Processing Pipeline 91a62fa8d3d71e660945535119051aea https://www.encodeproject.org/files/ENCFF581FMD/@@download/ENCFF581FMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF175ZOJ bam unfiltered alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF809ESS 948503195 ENCODE Processing Pipeline 2c946e7b440c1076baae2601cd53670a https://www.encodeproject.org/files/ENCFF175ZOJ/@@download/ENCFF175ZOJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF078YUN bam unfiltered alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF809ESS 951920794 ENCODE Processing Pipeline cac655f2307a07320c1fbd9150e8e719 https://www.encodeproject.org/files/ENCFF078YUN/@@download/ENCFF078YUN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF680KRY bam unfiltered alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF566HIZ, ENCFF807MUK 1193975831 ENCODE Processing Pipeline e9a3560277e358de2b473e66f0328354 https://www.encodeproject.org/files/ENCFF680KRY/@@download/ENCFF680KRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF753WNJ bam unfiltered alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF566HIZ, ENCFF643CGH 1199268558 ENCODE Processing Pipeline 3dd12a33db4f8aacd987041c65b27fb5 https://www.encodeproject.org/files/ENCFF753WNJ/@@download/ENCFF753WNJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF562BIX bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF566HIZ, ENCFF807MUK 640091502 ENCODE Processing Pipeline d5e810338e9f7d6360ebc0ca084b926c https://www.encodeproject.org/files/ENCFF562BIX/@@download/ENCFF562BIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF247KKW bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF809ESS 526817552 ENCODE Processing Pipeline 2478a9eb8cccd9f1cd9d1aa2892fd7b2 https://www.encodeproject.org/files/ENCFF247KKW/@@download/ENCFF247KKW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046IYE bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF566HIZ, ENCFF643CGH 639475540 ENCODE Processing Pipeline 94a7dbed32a317c566d8f37bbd82ee3c https://www.encodeproject.org/files/ENCFF046IYE/@@download/ENCFF046IYE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF038BZE bigWig fold change over control ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF562BIX, ENCFF578XGS 393904617 ENCODE Processing Pipeline 5219c1fafc2bd86637e41db027bb6daa https://www.encodeproject.org/files/ENCFF038BZE/@@download/ENCFF038BZE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF441DMR bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF562BIX, ENCFF578XGS, ENCFF581FMD 6924289 ENCODE Processing Pipeline f3487b0cbc6e3b79c063cc7cba96832e https://www.encodeproject.org/files/ENCFF441DMR/@@download/ENCFF441DMR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF501CPP bigBed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF253IKF 13168703 ENCODE Processing Pipeline 5c19c76503306a590bedb4aaec91b716 https://www.encodeproject.org/files/ENCFF501CPP/@@download/ENCFF501CPP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF253IKF bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF581FMD 5482960 ENCODE Processing Pipeline 249b845cd9b85e8ef8ee9f7148c3c344 https://www.encodeproject.org/files/ENCFF253IKF/@@download/ENCFF253IKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF619FEM bigBed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF568NCD 13210823 ENCODE Processing Pipeline 5b9b9b4b60736925dc4d82dfd9e4af46 https://www.encodeproject.org/files/ENCFF619FEM/@@download/ENCFF619FEM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF883UWZ bigBed narrowPeak conservative idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF371FIK 91436 ENCODE Processing Pipeline eadd4232847a3b2c5cffefd25618ee14 https://www.encodeproject.org/files/ENCFF883UWZ/@@download/ENCFF883UWZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF690RHN bigWig signal p-value ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF581FMD 431711008 ENCODE Processing Pipeline 9e83021f2fc8bd8e142a213874fce9de https://www.encodeproject.org/files/ENCFF690RHN/@@download/ENCFF690RHN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF160DUA bigWig fold change over control ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF581FMD 336202937 ENCODE Processing Pipeline 037ba7491b3e6a1e37778f6cda44c93d https://www.encodeproject.org/files/ENCFF160DUA/@@download/ENCFF160DUA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF812IHL bigWig signal p-value ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF562BIX, ENCFF578XGS 473840628 ENCODE Processing Pipeline 9e6c5afd908b6f1c8c11d003d9c15ed9 https://www.encodeproject.org/files/ENCFF812IHL/@@download/ENCFF812IHL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF033CYW bigWig fold change over control ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF562BIX, ENCFF578XGS, ENCFF581FMD 798918876 ENCODE Processing Pipeline b34fc4175ac11e018d3895c2bc478413 https://www.encodeproject.org/files/ENCFF033CYW/@@download/ENCFF033CYW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF917LVS bigWig signal p-value ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF375WCZ, ENCFF562BIX, ENCFF578XGS, ENCFF581FMD 960317023 ENCODE Processing Pipeline 54175bc16f14bb6f66a1fb0e1e2afd94 https://www.encodeproject.org/files/ENCFF917LVS/@@download/ENCFF917LVS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF638JPY bigBed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF441DMR 13279850 ENCODE Processing Pipeline faf8b29887a395cc044060e4005f5ca2 https://www.encodeproject.org/files/ENCFF638JPY/@@download/ENCFF638JPY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF371FIK bed narrowPeak conservative idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF253IKF, ENCFF441DMR, ENCFF568NCD 4941 ENCODE Processing Pipeline 1893a8696efb1a8997d6c396bc104711 https://www.encodeproject.org/files/ENCFF371FIK/@@download/ENCFF371FIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF051CIX bigBed narrowPeak optimal idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF337FIU 86430 ENCODE Processing Pipeline 6aa386e0141e1088ad2d7fe175784721 https://www.encodeproject.org/files/ENCFF051CIX/@@download/ENCFF051CIX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF568NCD bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF562BIX, ENCFF578XGS 5596426 ENCODE Processing Pipeline 13927fba3349d0aa440f943efb87559b https://www.encodeproject.org/files/ENCFF568NCD/@@download/ENCFF568NCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF337FIU bed narrowPeak optimal idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF253IKF, ENCFF441DMR, ENCFF568NCD 6156 ENCODE Processing Pipeline 5c6e5dcd2e6257ba6e19a2c101e0f053 https://www.encodeproject.org/files/ENCFF337FIU/@@download/ENCFF337FIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF753OWY bigWig signal p-value ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF046IYE, ENCFF279QEN 455714779 ENCODE Processing Pipeline 496cc4d5b6dbb81692a0aec9c5c2759d https://www.encodeproject.org/files/ENCFF753OWY/@@download/ENCFF753OWY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF131MYK bigWig fold change over control ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF247KKW, ENCFF253UKR 318993088 ENCODE Processing Pipeline 669af6e3364e2e6b4f781a00b1d2a9be https://www.encodeproject.org/files/ENCFF131MYK/@@download/ENCFF131MYK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF447LUE bigWig fold change over control ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF046IYE, ENCFF279QEN 391396793 ENCODE Processing Pipeline c748e463a01a4946ddf75be747110472 https://www.encodeproject.org/files/ENCFF447LUE/@@download/ENCFF447LUE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF859YCF bigBed narrowPeak conservative idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF331QXX 91532 ENCODE Processing Pipeline d6b3a4bdd57fff5051d0081edd006723 https://www.encodeproject.org/files/ENCFF859YCF/@@download/ENCFF859YCF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF132DPE bigWig signal p-value ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF046IYE, ENCFF247KKW, ENCFF253UKR, ENCFF279QEN 814746273 ENCODE Processing Pipeline bed7fca474d42ce7907c2ba1f3d18370 https://www.encodeproject.org/files/ENCFF132DPE/@@download/ENCFF132DPE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF871BMJ bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF046IYE, ENCFF279QEN 5591885 ENCODE Processing Pipeline e5f28256b20be415456fcc4a9b406b49 https://www.encodeproject.org/files/ENCFF871BMJ/@@download/ENCFF871BMJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF331QXX bed narrowPeak conservative idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF346UDN, ENCFF419RSJ, ENCFF862JZI, ENCFF871BMJ 4710 ENCODE Processing Pipeline 19fea9cad654a70ee04b48b980ac2e12 https://www.encodeproject.org/files/ENCFF331QXX/@@download/ENCFF331QXX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF933IJK bigWig signal p-value ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF247KKW, ENCFF253UKR 450760527 ENCODE Processing Pipeline 6e8151d60a809d2186b2f6797e253ce8 https://www.encodeproject.org/files/ENCFF933IJK/@@download/ENCFF933IJK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF346UDN bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF046IYE, ENCFF247KKW, ENCFF253UKR, ENCFF279QEN 6874581 ENCODE Processing Pipeline aead6b076fb32a5457222b13e39a0a83 https://www.encodeproject.org/files/ENCFF346UDN/@@download/ENCFF346UDN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF760BTF bigBed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF862JZI 13183906 ENCODE Processing Pipeline 448b4b29cb1b0a9f09ce0a53a37e62a4 https://www.encodeproject.org/files/ENCFF760BTF/@@download/ENCFF760BTF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF446JJH bigBed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF346UDN 13312374 ENCODE Processing Pipeline c1e15e821bb4295edfe4d2c8e144fec2 https://www.encodeproject.org/files/ENCFF446JJH/@@download/ENCFF446JJH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF659KLD bigWig fold change over control ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF046IYE, ENCFF247KKW, ENCFF253UKR, ENCFF279QEN 779495658 ENCODE Processing Pipeline cc141aa164b897d711570bab07b2e935 https://www.encodeproject.org/files/ENCFF659KLD/@@download/ENCFF659KLD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF394JLS bigBed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF871BMJ 13218198 ENCODE Processing Pipeline 3e7acfca41181f8a4171c89f078f2013 https://www.encodeproject.org/files/ENCFF394JLS/@@download/ENCFF394JLS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF311VBW bigBed narrowPeak optimal idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF858FBZ 85156 ENCODE Processing Pipeline b5af3802174d2df642bbc7bbbdcced2d https://www.encodeproject.org/files/ENCFF311VBW/@@download/ENCFF311VBW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF862JZI bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF247KKW, ENCFF253UKR 5185320 ENCODE Processing Pipeline 1b136d7e7370a4517f92eadf71c83d90 https://www.encodeproject.org/files/ENCFF862JZI/@@download/ENCFF862JZI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF858FBZ bed narrowPeak optimal idr thresholded peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF346UDN, ENCFF419RSJ, ENCFF862JZI, ENCFF871BMJ 5528 ENCODE Processing Pipeline 51ce4012e0b13d1253674d20537a8167 https://www.encodeproject.org/files/ENCFF858FBZ/@@download/ENCFF858FBZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF699XDW fastq reads ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 1 50 single-ended 1030596607 Richard Myers, HAIB 5976ccb379260d0cd20f61d1a2030063 SRA:SRR5331340 https://www.encodeproject.org/files/ENCFF699XDW/@@download/ENCFF699XDW.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF470IAE fastq reads ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 1 50 single-ended 1074221866 Richard Myers, HAIB d78dec7b11e04c37d3183430318b01fa SRA:SRR5331341 https://www.encodeproject.org/files/ENCFF470IAE/@@download/ENCFF470IAE.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF601XIH bam unfiltered alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 50 ENCFF643CGH, ENCFF699XDW 1153114750 ENCODE Processing Pipeline 5cc55747c761d86ef3515612e81824ff https://www.encodeproject.org/files/ENCFF601XIH/@@download/ENCFF601XIH.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF816NSF bam unfiltered alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 50 ENCFF470IAE, ENCFF807MUK 1213761207 ENCODE Processing Pipeline aa8f996d99c527384114835cd48dc0ab https://www.encodeproject.org/files/ENCFF816NSF/@@download/ENCFF816NSF.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF480XML bam unfiltered alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 50 ENCFF699XDW, ENCFF807MUK 1148778264 ENCODE Processing Pipeline 2a0b1e0f5bd7e1bfacd9696bf7a56cef https://www.encodeproject.org/files/ENCFF480XML/@@download/ENCFF480XML.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF054MPE bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 50 ENCFF699XDW, ENCFF807MUK 874608334 ENCODE Processing Pipeline 524edd686b0a85189637ee543f3c37a1 https://www.encodeproject.org/files/ENCFF054MPE/@@download/ENCFF054MPE.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF968PCC bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 50 ENCFF470IAE, ENCFF807MUK 909534840 ENCODE Processing Pipeline 7a6ffc4b65485a82d1a68afa9a795535 https://www.encodeproject.org/files/ENCFF968PCC/@@download/ENCFF968PCC.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF848EGL bam unfiltered alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 50 ENCFF470IAE, ENCFF643CGH 1219203845 ENCODE Processing Pipeline 0f140eda48647ce2be08271c23a129f5 https://www.encodeproject.org/files/ENCFF848EGL/@@download/ENCFF848EGL.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF681OPS bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 50 ENCFF643CGH, ENCFF699XDW 874364556 ENCODE Processing Pipeline 7407c75168b33ffb8331e0729f40af5c https://www.encodeproject.org/files/ENCFF681OPS/@@download/ENCFF681OPS.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF070PRN bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 50 ENCFF470IAE, ENCFF643CGH 909471115 ENCODE Processing Pipeline c15b5797fbef8f407b484122f5e10cb5 https://www.encodeproject.org/files/ENCFF070PRN/@@download/ENCFF070PRN.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF176KMF bed narrowPeak optimal idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF001TDO, ENCFF295HXB, ENCFF453UZM, ENCFF837FJB 193128 ENCODE Processing Pipeline ce0f99a94593258bc7e60325d0302158 https://www.encodeproject.org/files/ENCFF176KMF/@@download/ENCFF176KMF.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF295HXB bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF023YTY, ENCFF968PCC 5808975 ENCODE Processing Pipeline 6be4910cb1f430a3f6eb8df1151940e1 https://www.encodeproject.org/files/ENCFF295HXB/@@download/ENCFF295HXB.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF837FJB bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF023YTY, ENCFF054MPE 5916062 ENCODE Processing Pipeline 0862091ce74776d10642d4dcbc146d70 https://www.encodeproject.org/files/ENCFF837FJB/@@download/ENCFF837FJB.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF453UZM bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF023YTY, ENCFF054MPE, ENCFF968PCC 6569318 ENCODE Processing Pipeline 7fe8a063d394c45fd6f46054ac10865f https://www.encodeproject.org/files/ENCFF453UZM/@@download/ENCFF453UZM.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF586DWB bed narrowPeak conservative idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF001TDO, ENCFF295HXB, ENCFF453UZM, ENCFF837FJB 180311 ENCODE Processing Pipeline 628a49170b6dee579b0e5b24cca293f1 https://www.encodeproject.org/files/ENCFF586DWB/@@download/ENCFF586DWB.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF830BXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF176KMF 431759 ENCODE Processing Pipeline a9faa850aa3d1a312d40c7a9cc3ed226 https://www.encodeproject.org/files/ENCFF830BXZ/@@download/ENCFF830BXZ.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF481WVS bigWig signal p-value ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF023YTY, ENCFF968PCC 424730014 ENCODE Processing Pipeline e9cc8603f2299106f54148873163a8a5 https://www.encodeproject.org/files/ENCFF481WVS/@@download/ENCFF481WVS.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF813WNN bigBed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF837FJB 13127404 ENCODE Processing Pipeline a18b346e3e7216c6004c757faf168a49 https://www.encodeproject.org/files/ENCFF813WNN/@@download/ENCFF813WNN.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF933QSA bigBed narrowPeak conservative idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF586DWB 411119 ENCODE Processing Pipeline c2bc538c68f1e2e47a7d91f31c55f1b0 https://www.encodeproject.org/files/ENCFF933QSA/@@download/ENCFF933QSA.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF553LPP bigWig signal p-value ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF023YTY, ENCFF054MPE, ENCFF968PCC 420756708 ENCODE Processing Pipeline ea74bbd39fed593e55db4380b985d296 https://www.encodeproject.org/files/ENCFF553LPP/@@download/ENCFF553LPP.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF828HGI bigBed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF295HXB 13160814 ENCODE Processing Pipeline 847766f4cc87f18d722803f785e86fad https://www.encodeproject.org/files/ENCFF828HGI/@@download/ENCFF828HGI.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF982KJK bigWig signal p-value ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF023YTY, ENCFF054MPE 422529758 ENCODE Processing Pipeline 6719d7dfac5ecc8949e649ae3acdf026 https://www.encodeproject.org/files/ENCFF982KJK/@@download/ENCFF982KJK.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF461AKB bigWig fold change over control ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF023YTY, ENCFF054MPE 374779293 ENCODE Processing Pipeline fe914a742bf0f6c293e6f55d68278bdb https://www.encodeproject.org/files/ENCFF461AKB/@@download/ENCFF461AKB.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF837AEU bigWig fold change over control ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF023YTY, ENCFF054MPE, ENCFF968PCC 658591985 ENCODE Processing Pipeline 288696746e5d095b51b624d977552022 https://www.encodeproject.org/files/ENCFF837AEU/@@download/ENCFF837AEU.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF223FAL bigBed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF453UZM 13153511 ENCODE Processing Pipeline 332227f1d885a808685a402254a173d9 https://www.encodeproject.org/files/ENCFF223FAL/@@download/ENCFF223FAL.bigBed hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF822LFM bigWig fold change over control ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF023YTY, ENCFF968PCC 387560401 ENCODE Processing Pipeline c2d7c79d93db097ec882e503546b3477 https://www.encodeproject.org/files/ENCFF822LFM/@@download/ENCFF822LFM.bigWig hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF004ICV bigWig signal p-value ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF070PRN, ENCFF582CVJ 431210071 ENCODE Processing Pipeline 06eec5d498324c89a0bc883cf1d52a13 https://www.encodeproject.org/files/ENCFF004ICV/@@download/ENCFF004ICV.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF927SRG bigWig fold change over control ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF070PRN, ENCFF582CVJ 395594162 ENCODE Processing Pipeline 6b1d2d55e87f39eb531f19c3f2df43b1 https://www.encodeproject.org/files/ENCFF927SRG/@@download/ENCFF927SRG.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF213SAP bigWig signal p-value ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF582CVJ, ENCFF681OPS 422412602 ENCODE Processing Pipeline 6fbb28309e39bede4b015f9ca29f39bf https://www.encodeproject.org/files/ENCFF213SAP/@@download/ENCFF213SAP.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF484TMW bigWig signal p-value ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF070PRN, ENCFF582CVJ, ENCFF681OPS 420652065 ENCODE Processing Pipeline d1e964e6bb27324dc7e6925c21dfcc9c https://www.encodeproject.org/files/ENCFF484TMW/@@download/ENCFF484TMW.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF637CGN bigWig fold change over control ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF582CVJ, ENCFF681OPS 373583613 ENCODE Processing Pipeline f6693a4a753858c6145866f84350a9ef https://www.encodeproject.org/files/ENCFF637CGN/@@download/ENCFF637CGN.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF351DSM bigWig fold change over control ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF070PRN, ENCFF582CVJ, ENCFF681OPS 657210865 ENCODE Processing Pipeline c4e1947dad862304da5e85825f7de0cc https://www.encodeproject.org/files/ENCFF351DSM/@@download/ENCFF351DSM.bigWig GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF204MYY bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF070PRN, ENCFF582CVJ, ENCFF681OPS 6411772 ENCODE Processing Pipeline 4d57fb10aa9ab987ac45bf54954bf2bb https://www.encodeproject.org/files/ENCFF204MYY/@@download/ENCFF204MYY.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF096AID bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF070PRN, ENCFF582CVJ 5615990 ENCODE Processing Pipeline 8c2a740963c0a4f193f697c20c649e79 https://www.encodeproject.org/files/ENCFF096AID/@@download/ENCFF096AID.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF151CLB bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF582CVJ, ENCFF681OPS 5691677 ENCODE Processing Pipeline a630f38b1598cbe53f4963b6b705a02d https://www.encodeproject.org/files/ENCFF151CLB/@@download/ENCFF151CLB.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF441LTY bigBed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF096AID 13099425 ENCODE Processing Pipeline 0f71dc8e33430ac7da80bf99ac7d305f https://www.encodeproject.org/files/ENCFF441LTY/@@download/ENCFF441LTY.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF292IBW bigBed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF151CLB 13083872 ENCODE Processing Pipeline d4cc22fc434067240fd61f8bc47b893a https://www.encodeproject.org/files/ENCFF292IBW/@@download/ENCFF292IBW.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF753AKA bigBed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF204MYY 13146994 ENCODE Processing Pipeline 9c0d2cde69d0a88403d82b6568f40131 https://www.encodeproject.org/files/ENCFF753AKA/@@download/ENCFF753AKA.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF697PEL bigBed narrowPeak conservative idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF497ZJO 425668 ENCODE Processing Pipeline ac29b097f985e12d9765883ba59129eb https://www.encodeproject.org/files/ENCFF697PEL/@@download/ENCFF697PEL.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF186YGH bed narrowPeak optimal idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF096AID, ENCFF151CLB, ENCFF204MYY, ENCFF419RSJ 190509 ENCODE Processing Pipeline b719ba9f0e996a9443156098eac0f01d https://www.encodeproject.org/files/ENCFF186YGH/@@download/ENCFF186YGH.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF497ZJO bed narrowPeak conservative idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF096AID, ENCFF151CLB, ENCFF204MYY, ENCFF419RSJ 188590 ENCODE Processing Pipeline 0882c669c9391d5a20e79e69df12bc04 https://www.encodeproject.org/files/ENCFF497ZJO/@@download/ENCFF497ZJO.bed.gz GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF985QWD bigBed narrowPeak optimal idr thresholded peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1, 2 ENCFF186YGH 430079 ENCODE Processing Pipeline 23dfd8550013dc3518f499da07ec0ba0 https://www.encodeproject.org/files/ENCFF985QWD/@@download/ENCFF985QWD.bigBed GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF830GPY fastq reads ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF912ESY 3191838782 Michael Snyder, Stanford 0e9f95d6f42f72f9c7819cdd2ba50036 SRA:SRR6214065 https://www.encodeproject.org/files/ENCFF830GPY/@@download/ENCFF830GPY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF912ESY fastq reads ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF830GPY 3139996981 Michael Snyder, Stanford 293c4af56803b3c68f8837556222801b SRA:SRR6214065 https://www.encodeproject.org/files/ENCFF912ESY/@@download/ENCFF912ESY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF555XUI fastq reads ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF212ALP 3996335623 Michael Snyder, Stanford 41b5fe345588ced77a7ff71f030ac696 SRA:SRR6214064 https://www.encodeproject.org/files/ENCFF555XUI/@@download/ENCFF555XUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF212ALP fastq reads ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF555XUI 4067530208 Michael Snyder, Stanford b7a9a5768d81715a1719d6e66ee6b745 SRA:SRR6214064 https://www.encodeproject.org/files/ENCFF212ALP/@@download/ENCFF212ALP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF910DRX bam unfiltered alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF830GPY, ENCFF912ESY 6368047491 ENCODE Processing Pipeline 32ea50dcd1c8304467d460287d282d39 https://www.encodeproject.org/files/ENCFF910DRX/@@download/ENCFF910DRX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF840CEN bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF830GPY, ENCFF912ESY 5425905632 ENCODE Processing Pipeline 9a94ecc4cd35aba2aff49074d0553aca https://www.encodeproject.org/files/ENCFF840CEN/@@download/ENCFF840CEN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF110YBZ bam unfiltered alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF830GPY, ENCFF912ESY 6375301918 ENCODE Processing Pipeline 62a15313621b8868107efe16f0c6a122 https://www.encodeproject.org/files/ENCFF110YBZ/@@download/ENCFF110YBZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF037ZTT bam unfiltered alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF212ALP, ENCFF555XUI, ENCFF807MUK 7954715619 ENCODE Processing Pipeline 58ed64dc2cffcb574bcc2c43bd9f95c4 https://www.encodeproject.org/files/ENCFF037ZTT/@@download/ENCFF037ZTT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF178POG bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF830GPY, ENCFF912ESY 5429581184 ENCODE Processing Pipeline db82115f74d302f8b2e4003ddb3a709b https://www.encodeproject.org/files/ENCFF178POG/@@download/ENCFF178POG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF634EAD bam unfiltered alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF212ALP, ENCFF555XUI, ENCFF643CGH 7963397023 ENCODE Processing Pipeline debed7c78a8c1a46f317e244d5888ebf https://www.encodeproject.org/files/ENCFF634EAD/@@download/ENCFF634EAD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF844SVF bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF212ALP, ENCFF555XUI, ENCFF807MUK 6769863698 ENCODE Processing Pipeline 18cab7a4c3b2158ad1cd51ca2a95d54c https://www.encodeproject.org/files/ENCFF844SVF/@@download/ENCFF844SVF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF911MDN bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF212ALP, ENCFF555XUI, ENCFF643CGH 6775044574 ENCODE Processing Pipeline bc640f1b93247d7d24b11618a43a9c75 https://www.encodeproject.org/files/ENCFF911MDN/@@download/ENCFF911MDN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF932RIY bigWig signal p-value ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF840CEN 1375191292 ENCODE Processing Pipeline cc7e7caf46455f168e3a6b9319443d0d https://www.encodeproject.org/files/ENCFF932RIY/@@download/ENCFF932RIY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF799DLR bigWig signal p-value ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF844SVF 1313177424 ENCODE Processing Pipeline 8fb58ae70a88fab3fcd934123e8a97f4 https://www.encodeproject.org/files/ENCFF799DLR/@@download/ENCFF799DLR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF549DDR bigWig signal p-value ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF840CEN, ENCFF844SVF 1988078812 ENCODE Processing Pipeline 0d220598dbe58395eeb7ab40dbf61271 https://www.encodeproject.org/files/ENCFF549DDR/@@download/ENCFF549DDR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF355WSP bigWig fold change over control ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF840CEN 1521741435 ENCODE Processing Pipeline caa2b5c0ed4003f1d45228ceba9a6738 https://www.encodeproject.org/files/ENCFF355WSP/@@download/ENCFF355WSP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF416XHF bigWig fold change over control ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF844SVF 1721015764 ENCODE Processing Pipeline 0b1bb117b2d88e3b8ffbc85617c029d0 https://www.encodeproject.org/files/ENCFF416XHF/@@download/ENCFF416XHF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF825NFL bigWig fold change over control ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF840CEN, ENCFF844SVF 2238352403 ENCODE Processing Pipeline 35ba8b7b8be5471623ce58e062f7e9e6 https://www.encodeproject.org/files/ENCFF825NFL/@@download/ENCFF825NFL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF739RJB bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF840CEN, ENCFF844SVF 7235193 ENCODE Processing Pipeline b02483a58a466ef2d58566d2a08e30ab https://www.encodeproject.org/files/ENCFF739RJB/@@download/ENCFF739RJB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF104GDG bigBed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF739RJB 13205050 ENCODE Processing Pipeline ead35baf708dc5710a31c6cea368d6cb https://www.encodeproject.org/files/ENCFF104GDG/@@download/ENCFF104GDG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF357ABR bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF840CEN 6691736 ENCODE Processing Pipeline 190ee58fa1fe421fbddf62fd220c2980 https://www.encodeproject.org/files/ENCFF357ABR/@@download/ENCFF357ABR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF782NYK bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF844SVF 6894881 ENCODE Processing Pipeline 66db291835332e88980b79fb235891f9 https://www.encodeproject.org/files/ENCFF782NYK/@@download/ENCFF782NYK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF695CST bigBed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF357ABR 11227403 ENCODE Processing Pipeline d28ccee74acf5fb6d9eb491c63be66c1 https://www.encodeproject.org/files/ENCFF695CST/@@download/ENCFF695CST.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF121ZHF bigBed narrowPeak conservative idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF134FPM 229201 ENCODE Processing Pipeline 2ad1c0de32e86950543c46be6dac322b https://www.encodeproject.org/files/ENCFF121ZHF/@@download/ENCFF121ZHF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF768VGK bigBed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF782NYK 11135808 ENCODE Processing Pipeline 2d94db224f3636f44192161975a6e4af https://www.encodeproject.org/files/ENCFF768VGK/@@download/ENCFF768VGK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF622OQC bed narrowPeak optimal idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF357ABR, ENCFF739RJB, ENCFF782NYK 131637 ENCODE Processing Pipeline fc0db4a200773a7c3f6283611907280b https://www.encodeproject.org/files/ENCFF622OQC/@@download/ENCFF622OQC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF134FPM bed narrowPeak conservative idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF357ABR, ENCFF739RJB, ENCFF782NYK 97101 ENCODE Processing Pipeline 7dc69c46fdb0078596f0287444424f76 https://www.encodeproject.org/files/ENCFF134FPM/@@download/ENCFF134FPM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF174XXR bigBed narrowPeak optimal idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF622OQC 280866 ENCODE Processing Pipeline cd50e2641d4e66ed5f6fb6fba9309c08 https://www.encodeproject.org/files/ENCFF174XXR/@@download/ENCFF174XXR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF187LSN bigWig signal p-value ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF178POG 1488343200 ENCODE Processing Pipeline cde3ed847fd8e305efb967f0d0ee90a9 https://www.encodeproject.org/files/ENCFF187LSN/@@download/ENCFF187LSN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF235JAI bigWig signal p-value ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF911MDN 1729672634 ENCODE Processing Pipeline a85f7a2ed583b9fb3f0634b1fe014ca9 https://www.encodeproject.org/files/ENCFF235JAI/@@download/ENCFF235JAI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF985LUU bigWig signal p-value ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF178POG, ENCFF911MDN 1980938324 ENCODE Processing Pipeline eebf52c9b2c2e367405e8d6a3c6a0383 https://www.encodeproject.org/files/ENCFF985LUU/@@download/ENCFF985LUU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF879UQN bigWig fold change over control ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF178POG 1485718563 ENCODE Processing Pipeline 12a6b98ffaf1b6ca270aad24aeb8ea22 https://www.encodeproject.org/files/ENCFF879UQN/@@download/ENCFF879UQN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF666YKS bigWig fold change over control ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF911MDN 1715623032 ENCODE Processing Pipeline db9bbafd8fe0ce9c3284d6584fee39fe https://www.encodeproject.org/files/ENCFF666YKS/@@download/ENCFF666YKS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF865KVU bigWig fold change over control ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF178POG, ENCFF911MDN 2230081943 ENCODE Processing Pipeline aad6bc01c73375641da7dd5c9ecaafef https://www.encodeproject.org/files/ENCFF865KVU/@@download/ENCFF865KVU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF341UHD bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF178POG 6694621 ENCODE Processing Pipeline 9965dd75a925f4ad3316bdd49598ad07 https://www.encodeproject.org/files/ENCFF341UHD/@@download/ENCFF341UHD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF296BNP bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF911MDN 6896781 ENCODE Processing Pipeline a37c846bf5c9824be2a6e84620da1766 https://www.encodeproject.org/files/ENCFF296BNP/@@download/ENCFF296BNP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF795QYH bigBed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF296BNP 11150000 ENCODE Processing Pipeline 9dd7064c81c2201a559e8ebe5b8916ee https://www.encodeproject.org/files/ENCFF795QYH/@@download/ENCFF795QYH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF143MMO bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF178POG, ENCFF911MDN 7239813 ENCODE Processing Pipeline e2e519949a75c935f5a8aa5b91acaa86 https://www.encodeproject.org/files/ENCFF143MMO/@@download/ENCFF143MMO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF520DYQ bigBed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF341UHD 11236315 ENCODE Processing Pipeline c5824a82a86a2bbb2288a75e5a30f023 https://www.encodeproject.org/files/ENCFF520DYQ/@@download/ENCFF520DYQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF278MIH bigBed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF143MMO 13217371 ENCODE Processing Pipeline 378231dd4e927d5aed547805ed143537 https://www.encodeproject.org/files/ENCFF278MIH/@@download/ENCFF278MIH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF829IJE bed narrowPeak conservative idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF143MMO, ENCFF296BNP, ENCFF341UHD, ENCFF419RSJ 96546 ENCODE Processing Pipeline f3bc066de3cadefeb609a26dcaeeadc1 https://www.encodeproject.org/files/ENCFF829IJE/@@download/ENCFF829IJE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF918XHL bigBed narrowPeak conservative idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF829IJE 228565 ENCODE Processing Pipeline 456fc309434d32fbbd15511c3029bb43 https://www.encodeproject.org/files/ENCFF918XHL/@@download/ENCFF918XHL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF261IAG bed narrowPeak optimal idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF143MMO, ENCFF296BNP, ENCFF341UHD, ENCFF419RSJ 136539 ENCODE Processing Pipeline dfde937519898d97eabb2ec9a57b1f6e https://www.encodeproject.org/files/ENCFF261IAG/@@download/ENCFF261IAG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF492BCE bigBed narrowPeak optimal idr thresholded peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF261IAG 289215 ENCODE Processing Pipeline 1939094649d5f3aece759eb771c1985c https://www.encodeproject.org/files/ENCFF492BCE/@@download/ENCFF492BCE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF025RQO bam unfiltered alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 36 ENCFF582BLP, ENCFF807MUK 3421679494 ENCODE Processing Pipeline 9e8ec27395c5b704b4acc8bc3359f6a2 https://www.encodeproject.org/files/ENCFF025RQO/@@download/ENCFF025RQO.bam hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF612VUM bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF469KWW 13915307 ENCODE Processing Pipeline a7fb73c01b3ceb90c26514a6a64bab00 https://www.encodeproject.org/files/ENCFF612VUM/@@download/ENCFF612VUM.bigBed GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF469KWW bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF186KKP, ENCFF511OFO 6523413 ENCODE Processing Pipeline e446054fdba95506da4a66e860ed371a https://www.encodeproject.org/files/ENCFF469KWW/@@download/ENCFF469KWW.bed.gz GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF542EGF bed narrowPeak conservative idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF146TJM, ENCFF419RSJ, ENCFF469KWW, ENCFF682EDA 712392 ENCODE Processing Pipeline efaaa01d47f3bc567f25bd7a9479c83d https://www.encodeproject.org/files/ENCFF542EGF/@@download/ENCFF542EGF.bed.gz GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF825ZYC bed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF146TJM, ENCFF419RSJ, ENCFF469KWW, ENCFF682EDA 746218 ENCODE Processing Pipeline 3b4d9659973a4aa0562c8461dbdfb873 https://www.encodeproject.org/files/ENCFF825ZYC/@@download/ENCFF825ZYC.bed.gz GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF555ZHI bigBed narrowPeak conservative idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF542EGF 1224992 ENCODE Processing Pipeline b9e39086895baf0735e284fccc030940 https://www.encodeproject.org/files/ENCFF555ZHI/@@download/ENCFF555ZHI.bigBed GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF747SFO bigBed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF825ZYC 1268941 ENCODE Processing Pipeline f57211b2ff6901b365362b92442311c3 https://www.encodeproject.org/files/ENCFF747SFO/@@download/ENCFF747SFO.bigBed GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF908KEB fastq reads ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 1 36 single-ended 787708499 Bradley Bernstein, Broad a7e414591978217a8e15214ee766e45b SRA:SRR5832751 https://www.encodeproject.org/files/ENCFF908KEB/@@download/ENCFF908KEB.fastq.gz Illumina HiSeq 2500 /files/ENCFF137UFY/ released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF582BLP fastq reads ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 1 36 single-ended 2711477090 Bradley Bernstein, Broad 6c78d78e7aaae4086eb705773bf13472 SRA:SRR5832750 https://www.encodeproject.org/files/ENCFF582BLP/@@download/ENCFF582BLP.fastq.gz Illumina HiSeq 2500 /files/ENCFF169TIB/, /files/ENCFF630PTQ/ released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF011CRJ bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 36 ENCFF582BLP, ENCFF807MUK 2415748471 ENCODE Processing Pipeline 41bd17f7663bcd50f72126df80137bc2 https://www.encodeproject.org/files/ENCFF011CRJ/@@download/ENCFF011CRJ.bam hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF102YMG bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF807MUK, ENCFF908KEB 776780373 ENCODE Processing Pipeline 29281be582d05b87240814887ca372ce https://www.encodeproject.org/files/ENCFF102YMG/@@download/ENCFF102YMG.bam hg19 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF357JMW bam unfiltered alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 36 ENCFF582BLP, ENCFF643CGH 3439150205 ENCODE Processing Pipeline 65529d3572bbd4177954d4d5d4838e33 https://www.encodeproject.org/files/ENCFF357JMW/@@download/ENCFF357JMW.bam GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF511OFO bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 36 ENCFF582BLP, ENCFF643CGH 2414463757 ENCODE Processing Pipeline c754c0d56ffa29cef3b4cc779c49a2f6 https://www.encodeproject.org/files/ENCFF511OFO/@@download/ENCFF511OFO.bam GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF188HCD bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF014IHG, ENCFF511OFO, ENCFF550VRT 1516005793 ENCODE Processing Pipeline 80457e85242a120f881015ec82340474 https://www.encodeproject.org/files/ENCFF188HCD/@@download/ENCFF188HCD.bigWig GRCh38 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF371ROI bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF014IHG, ENCFF511OFO, ENCFF550VRT 1419030133 ENCODE Processing Pipeline fe191a892d114f84de5e10b86325557c https://www.encodeproject.org/files/ENCFF371ROI/@@download/ENCFF371ROI.bigWig GRCh38 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF674DQN fastq reads ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 1 76 single-ended 824489784 Bradley Bernstein, Broad cf55ef8a9a087714a22e6c3e607c1fc3 SRA:SRR5832752 https://www.encodeproject.org/files/ENCFF674DQN/@@download/ENCFF674DQN.fastq.gz Illumina HiSeq 2500 /files/ENCFF137UFY/ released low read length, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF344KYL fastq reads ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 1 76 single-ended 818065449 Bradley Bernstein, Broad 111ac29079ffcad9fd1fcf2091ccfbb2 SRA:SRR5832753 https://www.encodeproject.org/files/ENCFF344KYL/@@download/ENCFF344KYL.fastq.gz Illumina HiSeq 2500 /files/ENCFF137UFY/ released low read length, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF484SSQ bam unfiltered alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 36 ENCFF344KYL, ENCFF643CGH, ENCFF674DQN, ENCFF908KEB 2193585970 ENCODE Processing Pipeline 45fcb0b1a835c5cdf038ebd831747dd3 https://www.encodeproject.org/files/ENCFF484SSQ/@@download/ENCFF484SSQ.bam GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF526PLZ bam unfiltered alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 36 ENCFF344KYL, ENCFF674DQN, ENCFF807MUK, ENCFF908KEB 2181048590 ENCODE Processing Pipeline d6aa85e604bb18049f7f3c402810bcf1 https://www.encodeproject.org/files/ENCFF526PLZ/@@download/ENCFF526PLZ.bam hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF377EHJ bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 36 ENCFF344KYL, ENCFF643CGH, ENCFF674DQN, ENCFF908KEB 1516734432 ENCODE Processing Pipeline 92108b9923069105535a41e162561ea2 https://www.encodeproject.org/files/ENCFF377EHJ/@@download/ENCFF377EHJ.bam GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF450BPA bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 36 ENCFF344KYL, ENCFF674DQN, ENCFF807MUK, ENCFF908KEB 1517630603 ENCODE Processing Pipeline 4cf54206c1ce9e6a13fb3043b7beae57 https://www.encodeproject.org/files/ENCFF450BPA/@@download/ENCFF450BPA.bam hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF392NCG bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF186KKP, ENCFF511OFO 1135523197 ENCODE Processing Pipeline e66408ef999974a51bed5018c439eaec https://www.encodeproject.org/files/ENCFF392NCG/@@download/ENCFF392NCG.bigWig GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF640CAL bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF377EHJ, ENCFF550VRT 838110965 ENCODE Processing Pipeline 35a5b39b665db24fe1e0faf0deefe56a https://www.encodeproject.org/files/ENCFF640CAL/@@download/ENCFF640CAL.bigWig GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF345AEO bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF186KKP, ENCFF377EHJ, ENCFF511OFO, ENCFF550VRT 1800409434 ENCODE Processing Pipeline b898f3409de887e2261c7d981414d5ff https://www.encodeproject.org/files/ENCFF345AEO/@@download/ENCFF345AEO.bigWig GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF784WQQ bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF186KKP, ENCFF511OFO 1253377272 ENCODE Processing Pipeline 335d145c2492e3f27e71eda4fa0d6db6 https://www.encodeproject.org/files/ENCFF784WQQ/@@download/ENCFF784WQQ.bigWig GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF740UFP bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF377EHJ, ENCFF550VRT 960324172 ENCODE Processing Pipeline 84615301e000ee49e201e548f8937262 https://www.encodeproject.org/files/ENCFF740UFP/@@download/ENCFF740UFP.bigWig GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF558FUO bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF186KKP, ENCFF377EHJ, ENCFF511OFO, ENCFF550VRT 2084578422 ENCODE Processing Pipeline d1a75488576ad21ac1ae5d3c9a1e4ad0 https://www.encodeproject.org/files/ENCFF558FUO/@@download/ENCFF558FUO.bigWig GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF009KHF bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF186KKP, ENCFF511OFO 5212976 ENCODE Processing Pipeline d63f378004a7498bc252497eea084048 https://www.encodeproject.org/files/ENCFF009KHF/@@download/ENCFF009KHF.bed.gz GRCh38 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF146TJM bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF377EHJ, ENCFF550VRT 5970334 ENCODE Processing Pipeline 96f797a34cf8dc81d319e411529146ca https://www.encodeproject.org/files/ENCFF146TJM/@@download/ENCFF146TJM.bed.gz GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF682EDA bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF186KKP, ENCFF377EHJ, ENCFF511OFO, ENCFF550VRT 6981673 ENCODE Processing Pipeline 6642d80b39eb9bfa0e0ca3be9d38a7d4 https://www.encodeproject.org/files/ENCFF682EDA/@@download/ENCFF682EDA.bed.gz GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF438VUE bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF146TJM 11575564 ENCODE Processing Pipeline cf0842c4910b0ea8b6a26a5e74192c9e https://www.encodeproject.org/files/ENCFF438VUE/@@download/ENCFF438VUE.bigBed GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF689NZS bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF009KHF 9446841 ENCODE Processing Pipeline 626d6cdf18c6cc7b4beb9e7f21998cd6 https://www.encodeproject.org/files/ENCFF689NZS/@@download/ENCFF689NZS.bigBed GRCh38 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF596ZTD bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF682EDA 14024243 ENCODE Processing Pipeline 54fffa8512c64ff7826f02ffe5379a2c https://www.encodeproject.org/files/ENCFF596ZTD/@@download/ENCFF596ZTD.bigBed GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF779ZMJ bed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF009KHF, ENCFF146TJM, ENCFF419RSJ, ENCFF682EDA 699398 ENCODE Processing Pipeline 9fd22559e546cf79735e5e9322722eb1 https://www.encodeproject.org/files/ENCFF779ZMJ/@@download/ENCFF779ZMJ.bed.gz GRCh38 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF049PIZ bigBed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF779ZMJ 1208545 ENCODE Processing Pipeline 1ff0b58923787642daf14e434f083941 https://www.encodeproject.org/files/ENCFF049PIZ/@@download/ENCFF049PIZ.bigBed GRCh38 archived low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF352AXZ bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF011CRJ, ENCFF824DBS 1147689270 ENCODE Processing Pipeline 8a111312a69795c764ad67ec74795e93 https://www.encodeproject.org/files/ENCFF352AXZ/@@download/ENCFF352AXZ.bigWig hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF299VQQ bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF011BPU, ENCFF450BPA 893753978 ENCODE Processing Pipeline b82bb23efecef2bb3e8ba8d2f235449e https://www.encodeproject.org/files/ENCFF299VQQ/@@download/ENCFF299VQQ.bigWig hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF707QYT bigWig signal p-value ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF011BPU, ENCFF011CRJ, ENCFF450BPA, ENCFF824DBS 1797973687 ENCODE Processing Pipeline 6551ef9a31c77c4796d0f0d73b914744 https://www.encodeproject.org/files/ENCFF707QYT/@@download/ENCFF707QYT.bigWig hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF324UIL bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF011BPU, ENCFF450BPA 961559186 ENCODE Processing Pipeline 043bbc26ba6ba1a6d53c96d244d70215 https://www.encodeproject.org/files/ENCFF324UIL/@@download/ENCFF324UIL.bigWig hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF816PKU bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF011CRJ, ENCFF824DBS 1295013341 ENCODE Processing Pipeline 39187989737729b82dbe4f08b167f030 https://www.encodeproject.org/files/ENCFF816PKU/@@download/ENCFF816PKU.bigWig hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF039WEH bigWig fold change over control ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF011BPU, ENCFF011CRJ, ENCFF450BPA, ENCFF824DBS 2050918788 ENCODE Processing Pipeline 488aa2a27c5e9351f37f10534e8eb90f https://www.encodeproject.org/files/ENCFF039WEH/@@download/ENCFF039WEH.bigWig hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF632FRL bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF974RFW 13930020 ENCODE Processing Pipeline bd4815b9fbe666f764cf50c1ac8cdaad https://www.encodeproject.org/files/ENCFF632FRL/@@download/ENCFF632FRL.bigBed hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF974RFW bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF011CRJ, ENCFF824DBS 6536918 ENCODE Processing Pipeline 0cb1fa6b766990b698099b6a1366dd10 https://www.encodeproject.org/files/ENCFF974RFW/@@download/ENCFF974RFW.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF691NVX bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF011BPU, ENCFF450BPA 5980204 ENCODE Processing Pipeline b31ee325e890e064436b069b008e24a3 https://www.encodeproject.org/files/ENCFF691NVX/@@download/ENCFF691NVX.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF507RFD bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF011BPU, ENCFF011CRJ, ENCFF450BPA, ENCFF824DBS 6993335 ENCODE Processing Pipeline 270aeefa42165913757b6f912bd99d58 https://www.encodeproject.org/files/ENCFF507RFD/@@download/ENCFF507RFD.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF026JFJ bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF691NVX 11582114 ENCODE Processing Pipeline 4f6245721d066a88bd70c4d228f825e9 https://www.encodeproject.org/files/ENCFF026JFJ/@@download/ENCFF026JFJ.bigBed hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF718TYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF208LHQ 1227776 ENCODE Processing Pipeline 15734bfb2102a29f626a67aad2befadc https://www.encodeproject.org/files/ENCFF718TYJ/@@download/ENCFF718TYJ.bigBed hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF336WJW bigBed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF507RFD 14034561 ENCODE Processing Pipeline c2d29db7cc95682f3430d5511cdafb59 https://www.encodeproject.org/files/ENCFF336WJW/@@download/ENCFF336WJW.bigBed hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF208LHQ bed narrowPeak conservative idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF001TDO, ENCFF507RFD, ENCFF691NVX, ENCFF974RFW 713631 ENCODE Processing Pipeline 5200a71791e80ea84e0b6a180f83c8c5 https://www.encodeproject.org/files/ENCFF208LHQ/@@download/ENCFF208LHQ.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF129BKY bigBed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF782KFG 1275074 ENCODE Processing Pipeline 6026ff4c4c98113eea29a1bdd4546256 https://www.encodeproject.org/files/ENCFF129BKY/@@download/ENCFF129BKY.bigBed hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF782KFG bed narrowPeak optimal idr thresholded peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1, 2 ENCFF001TDO, ENCFF507RFD, ENCFF691NVX, ENCFF974RFW 751199 ENCODE Processing Pipeline 0c81256878b5c45a50617e772db57427 https://www.encodeproject.org/files/ENCFF782KFG/@@download/ENCFF782KFG.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF437CXV bam unfiltered alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EWV, ENCFF807MUK 1248878133 ENCODE Processing Pipeline 34d11e0cf19160a44dd2c19e2b55d2a8 https://www.encodeproject.org/files/ENCFF437CXV/@@download/ENCFF437CXV.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF485TYG bam unfiltered alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EWM, ENCFF807MUK 919254646 ENCODE Processing Pipeline 057b15056f8d806010f45fa3b68b6915 https://www.encodeproject.org/files/ENCFF485TYG/@@download/ENCFF485TYG.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EWM fastq reads ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 1 36 single-ended 764629015 Michael Snyder, Stanford 6ecd735bf470bb23853645d3125aa6ac https://www.encodeproject.org/files/ENCFF002EWM/@@download/ENCFF002EWM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EWV fastq reads ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 1 36 single-ended 1035437334 Michael Snyder, Stanford af28234a344b9eda7db8a20bec9ba4e9 https://www.encodeproject.org/files/ENCFF002EWV/@@download/ENCFF002EWV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF537VTS bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EWM, ENCFF807MUK 641770979 ENCODE Processing Pipeline 9f8bacddad08c5b5f163351fda9cc829 https://www.encodeproject.org/files/ENCFF537VTS/@@download/ENCFF537VTS.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF698CGK bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EWV, ENCFF807MUK 857821994 ENCODE Processing Pipeline 8a247fbf795b14aa997f8923dc5cc368 https://www.encodeproject.org/files/ENCFF698CGK/@@download/ENCFF698CGK.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF540JYM bigWig fold change over control ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF537VTS, ENCFF879OQC 342883843 ENCODE Processing Pipeline 3a950ee1d094a76518b9183ac412e49b https://www.encodeproject.org/files/ENCFF540JYM/@@download/ENCFF540JYM.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF535JGP bigBed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF734ODE 11105791 ENCODE Processing Pipeline a057608d73e373f432596ba8d68e65e9 https://www.encodeproject.org/files/ENCFF535JGP/@@download/ENCFF535JGP.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF548TLZ bigWig signal p-value ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF537VTS, ENCFF879OQC 605896716 ENCODE Processing Pipeline f275ed19383bb590f071785fd83d9bd7 https://www.encodeproject.org/files/ENCFF548TLZ/@@download/ENCFF548TLZ.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF688ELV bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF537VTS, ENCFF879OQC 5214652 ENCODE Processing Pipeline 1e982fdcdd0d5a33ec084f5e05996c50 https://www.encodeproject.org/files/ENCFF688ELV/@@download/ENCFF688ELV.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF372WDK bigWig signal p-value ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF335IPE, ENCFF698CGK 468868412 ENCODE Processing Pipeline fc2b046d5d944b891fe8dc2ed249015c https://www.encodeproject.org/files/ENCFF372WDK/@@download/ENCFF372WDK.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF427BZX bigWig signal p-value ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF335IPE, ENCFF537VTS, ENCFF698CGK, ENCFF879OQC 1016129019 ENCODE Processing Pipeline 5ac72e92c2b8fc17a65e4163a785f708 https://www.encodeproject.org/files/ENCFF427BZX/@@download/ENCFF427BZX.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF399DRV bigWig fold change over control ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF335IPE, ENCFF698CGK 447679511 ENCODE Processing Pipeline e45de9bfd13be78a66882639df7a68ed https://www.encodeproject.org/files/ENCFF399DRV/@@download/ENCFF399DRV.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF926GDZ bigWig fold change over control ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF335IPE, ENCFF537VTS, ENCFF698CGK, ENCFF879OQC 874677728 ENCODE Processing Pipeline 4c790eeff9164e63d7eb4aca762344f4 https://www.encodeproject.org/files/ENCFF926GDZ/@@download/ENCFF926GDZ.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002SJT bigBed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF233END 13409715 ENCODE Processing Pipeline 6106bd1ae454f49f8bd9d26b302bfa5c https://www.encodeproject.org/files/ENCFF002SJT/@@download/ENCFF002SJT.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF734ODE bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF335IPE, ENCFF698CGK 5398160 ENCODE Processing Pipeline 0785087fd5337e650d276effc250e9d1 https://www.encodeproject.org/files/ENCFF734ODE/@@download/ENCFF734ODE.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF233END bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF335IPE, ENCFF537VTS, ENCFF698CGK, ENCFF879OQC 6583655 ENCODE Processing Pipeline 33004bcb8a0a22e15068fa9b27037dc6 https://www.encodeproject.org/files/ENCFF233END/@@download/ENCFF233END.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF446WGO bigBed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF688ELV 10792816 ENCODE Processing Pipeline d8847f5cca9f9af3bb9d16abc29efdc3 https://www.encodeproject.org/files/ENCFF446WGO/@@download/ENCFF446WGO.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF091NTA bam unfiltered alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EWM, ENCFF643CGH 922216150 ENCODE Processing Pipeline eed933ac97e4f63ed2d94dca410235e1 https://www.encodeproject.org/files/ENCFF091NTA/@@download/ENCFF091NTA.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF866SCT bam unfiltered alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EWV, ENCFF643CGH 1254461437 ENCODE Processing Pipeline 5d7806d98d76987b2775582c02a12cce https://www.encodeproject.org/files/ENCFF866SCT/@@download/ENCFF866SCT.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF200KSU bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EWV, ENCFF643CGH 857295497 ENCODE Processing Pipeline f82d709f6fbd23d0d6cdb5646e89aa7e https://www.encodeproject.org/files/ENCFF200KSU/@@download/ENCFF200KSU.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF444QTA bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EWM, ENCFF643CGH 641245931 ENCODE Processing Pipeline 38d93af11dcddf8f2cc5f09b0ab8b87c https://www.encodeproject.org/files/ENCFF444QTA/@@download/ENCFF444QTA.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF183PKB bigWig signal p-value ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF156FED, ENCFF200KSU 505580618 ENCODE Processing Pipeline df59ee2835acde07458be8748c8357ba https://www.encodeproject.org/files/ENCFF183PKB/@@download/ENCFF183PKB.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF292KEE bigWig signal p-value ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF444QTA, ENCFF577FNG 464548599 ENCODE Processing Pipeline 102ab0ba2f3cfc1c5c5caf578a740627 https://www.encodeproject.org/files/ENCFF292KEE/@@download/ENCFF292KEE.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF552LGZ bigWig signal p-value ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF156FED, ENCFF200KSU, ENCFF444QTA, ENCFF577FNG 936414248 ENCODE Processing Pipeline 5eabd88be3ad6944c585ad9c112f8325 https://www.encodeproject.org/files/ENCFF552LGZ/@@download/ENCFF552LGZ.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF638HLC bigWig fold change over control ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF156FED, ENCFF200KSU 458793521 ENCODE Processing Pipeline 461fc92b7343210ad849f30a165ed177 https://www.encodeproject.org/files/ENCFF638HLC/@@download/ENCFF638HLC.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF903NZK bigWig fold change over control ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF444QTA, ENCFF577FNG 334483074 ENCODE Processing Pipeline 5b383cd5da2794eb688f01442a3f4c4c https://www.encodeproject.org/files/ENCFF903NZK/@@download/ENCFF903NZK.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF414YUK bigWig fold change over control ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF156FED, ENCFF200KSU, ENCFF444QTA, ENCFF577FNG 880020764 ENCODE Processing Pipeline 201dbe798d6943742cd8db02edaae53c https://www.encodeproject.org/files/ENCFF414YUK/@@download/ENCFF414YUK.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF286ISA bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF156FED, ENCFF200KSU 5200918 ENCODE Processing Pipeline 304a20339a8fc3b0eca5e7cc7774b4f6 https://www.encodeproject.org/files/ENCFF286ISA/@@download/ENCFF286ISA.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF706TCL bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF444QTA, ENCFF577FNG 5120503 ENCODE Processing Pipeline 7c6b16a3a4bf7577ac8a4944199be313 https://www.encodeproject.org/files/ENCFF706TCL/@@download/ENCFF706TCL.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF244DDU bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF156FED, ENCFF200KSU, ENCFF444QTA, ENCFF577FNG 6414849 ENCODE Processing Pipeline c774c50819a787a3b57b8d35245a702c https://www.encodeproject.org/files/ENCFF244DDU/@@download/ENCFF244DDU.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF336XUD bigBed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF286ISA 11018863 ENCODE Processing Pipeline 8b9c89a14e8ab1ad3606f21f86181f73 https://www.encodeproject.org/files/ENCFF336XUD/@@download/ENCFF336XUD.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF828NGB bigBed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF706TCL 10793504 ENCODE Processing Pipeline b9386dcd09e1343d6f1e52fc48e44357 https://www.encodeproject.org/files/ENCFF828NGB/@@download/ENCFF828NGB.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF493ULM bigBed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF244DDU 13366049 ENCODE Processing Pipeline 2967cae8501f4e92c269555fcb022930 https://www.encodeproject.org/files/ENCFF493ULM/@@download/ENCFF493ULM.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF301SLW bed narrowPeak conservative idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF244DDU, ENCFF286ISA, ENCFF419RSJ, ENCFF706TCL 337570 ENCODE Processing Pipeline 32a0abce09e3a4f9d3dc82846ebf9b3d https://www.encodeproject.org/files/ENCFF301SLW/@@download/ENCFF301SLW.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF825ODI bigBed narrowPeak conservative idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF301SLW 632456 ENCODE Processing Pipeline a3294fa740d174318bb07c0d3849849d https://www.encodeproject.org/files/ENCFF825ODI/@@download/ENCFF825ODI.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF763HPQ bed narrowPeak optimal idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF244DDU, ENCFF286ISA, ENCFF419RSJ, ENCFF706TCL 382406 ENCODE Processing Pipeline 2c0b59eb801d4029352779b1d40a193e https://www.encodeproject.org/files/ENCFF763HPQ/@@download/ENCFF763HPQ.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF067FEI bigBed narrowPeak optimal idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF763HPQ 694780 ENCODE Processing Pipeline 25f0743e05bda977407c4cf58cd594bf https://www.encodeproject.org/files/ENCFF067FEI/@@download/ENCFF067FEI.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF521CRG bed narrowPeak optimal idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF233END, ENCFF688ELV, ENCFF734ODE 361453 ENCODE Processing Pipeline 8905c7dc4614bdddbe70d643dae0973b https://www.encodeproject.org/files/ENCFF521CRG/@@download/ENCFF521CRG.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF622ZJW bigBed narrowPeak optimal idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF521CRG 662978 ENCODE Processing Pipeline 1b6cec940e54c9e7f2c99b28473064b2 https://www.encodeproject.org/files/ENCFF622ZJW/@@download/ENCFF622ZJW.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF262ZUB bed narrowPeak conservative idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF233END, ENCFF688ELV, ENCFF734ODE 319016 ENCODE Processing Pipeline fa7c97e75eda3649cacea317695be06e https://www.encodeproject.org/files/ENCFF262ZUB/@@download/ENCFF262ZUB.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF142MPO bigBed narrowPeak conservative idr thresholded peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262ZUB 605924 ENCODE Processing Pipeline 61c0eee0abbe873663958d2c63766cd3 https://www.encodeproject.org/files/ENCFF142MPO/@@download/ENCFF142MPO.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF958OQI bam unfiltered alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF631JSV, ENCFF715KYL, ENCFF807MUK 7925093436 ENCODE Processing Pipeline 5775319fdf801d989d7f1d3448bd128c https://www.encodeproject.org/files/ENCFF958OQI/@@download/ENCFF958OQI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF388DQS bam unfiltered alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF002OWA, ENCFF807MUK, ENCFF833BQT 7516099077 ENCODE Processing Pipeline 451b7705e83f3d2c88f07dc28a4afa00 https://www.encodeproject.org/files/ENCFF388DQS/@@download/ENCFF388DQS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF631JSV fastq reads ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF715KYL 3617201273 Michael Snyder, Stanford 66d5aabb290767119e77a0255dbbf183 SRA:SRR5111853 https://www.encodeproject.org/files/ENCFF631JSV/@@download/ENCFF631JSV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF002OWA fastq reads ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF833BQT 3435842669 Michael Snyder, Stanford 83bbe1318deb7198d6ee418367699ef3 SRA:SRR5111854 https://www.encodeproject.org/files/ENCFF002OWA/@@download/ENCFF002OWA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF833BQT fastq reads ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF002OWA 3499852324 Michael Snyder, Stanford 8e44ad8e882e60cde3843a3eee21aa4e SRA:SRR5111854 https://www.encodeproject.org/files/ENCFF833BQT/@@download/ENCFF833BQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF715KYL fastq reads ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF631JSV 3680805482 Michael Snyder, Stanford 5ccb16f65eb9a15647e1a629582298c2 SRA:SRR5111853 https://www.encodeproject.org/files/ENCFF715KYL/@@download/ENCFF715KYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF954JCE bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF631JSV, ENCFF715KYL, ENCFF807MUK 6807177607 ENCODE Processing Pipeline 06f540cc77d093365e9bcd64308457d3 https://www.encodeproject.org/files/ENCFF954JCE/@@download/ENCFF954JCE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF799SDQ bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF002OWA, ENCFF807MUK, ENCFF833BQT 6570595075 ENCODE Processing Pipeline 9c5e18689e8f49911b0f6a2d0f5d729a https://www.encodeproject.org/files/ENCFF799SDQ/@@download/ENCFF799SDQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF198YKO bam unfiltered alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF002OWA, ENCFF643CGH, ENCFF833BQT 7523434650 ENCODE Processing Pipeline 1d3cb6f2782746e8a8493918095bb7dd https://www.encodeproject.org/files/ENCFF198YKO/@@download/ENCFF198YKO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF978EPB bam unfiltered alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF631JSV, ENCFF643CGH, ENCFF715KYL 7933710314 ENCODE Processing Pipeline 035e402d94010fda81a5a210df83b2bc https://www.encodeproject.org/files/ENCFF978EPB/@@download/ENCFF978EPB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF864ELR bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF002OWA, ENCFF643CGH, ENCFF833BQT 6571420145 ENCODE Processing Pipeline 205ca7ecd5db655674b3cda523681e52 https://www.encodeproject.org/files/ENCFF864ELR/@@download/ENCFF864ELR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF354GWS bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF631JSV, ENCFF643CGH, ENCFF715KYL 6809404961 ENCODE Processing Pipeline b156b33aa853f03615a407b2d76d336c https://www.encodeproject.org/files/ENCFF354GWS/@@download/ENCFF354GWS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF348SXG bigWig signal p-value ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF954JCE 1547742000 ENCODE Processing Pipeline 2aa9bc31e3686c6ba4ad01e9c73d9a6d https://www.encodeproject.org/files/ENCFF348SXG/@@download/ENCFF348SXG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF804APO bigWig signal p-value ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF799SDQ 1718850098 ENCODE Processing Pipeline 46e879fb765c90cb5e8227c91e2d23c9 https://www.encodeproject.org/files/ENCFF804APO/@@download/ENCFF804APO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF785HMG bigWig signal p-value ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF799SDQ, ENCFF954JCE 1965834285 ENCODE Processing Pipeline e25682aea953a9b703f4729dd6b9119f https://www.encodeproject.org/files/ENCFF785HMG/@@download/ENCFF785HMG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF748JOD bigWig fold change over control ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF954JCE 1687346910 ENCODE Processing Pipeline 6769df3d35e8645192451a705e90df3a https://www.encodeproject.org/files/ENCFF748JOD/@@download/ENCFF748JOD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF502DRG bigWig fold change over control ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF799SDQ 1659503335 ENCODE Processing Pipeline 977e760f457ff2e334bf807899297478 https://www.encodeproject.org/files/ENCFF502DRG/@@download/ENCFF502DRG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF036FIU bigWig fold change over control ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF799SDQ, ENCFF954JCE 2259484575 ENCODE Processing Pipeline ca595cf453865d45d3410a26df16c1c0 https://www.encodeproject.org/files/ENCFF036FIU/@@download/ENCFF036FIU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF021ZIA bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF954JCE 7092118 ENCODE Processing Pipeline 0debfbe11439ad239461a13416aaebb4 https://www.encodeproject.org/files/ENCFF021ZIA/@@download/ENCFF021ZIA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF427NOB bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF799SDQ 7065200 ENCODE Processing Pipeline 0370b4b4e2d0e8e1dbeb063ebc9cc43e https://www.encodeproject.org/files/ENCFF427NOB/@@download/ENCFF427NOB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF057EFZ bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF799SDQ, ENCFF954JCE 7278053 ENCODE Processing Pipeline 2869a0146aa32ae898ee420929f654c2 https://www.encodeproject.org/files/ENCFF057EFZ/@@download/ENCFF057EFZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF102KRD bigBed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF021ZIA 13401669 ENCODE Processing Pipeline 57434bd6556f1c3f24d1fd88d5044189 https://www.encodeproject.org/files/ENCFF102KRD/@@download/ENCFF102KRD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF412NOG bigBed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF427NOB 13412098 ENCODE Processing Pipeline 31a08cc9a2e2262a50853c060c886cf3 https://www.encodeproject.org/files/ENCFF412NOG/@@download/ENCFF412NOG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF197ATU bigBed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF057EFZ 13419003 ENCODE Processing Pipeline 71dfcca0da4a19bb7a686b0a68e17afe https://www.encodeproject.org/files/ENCFF197ATU/@@download/ENCFF197ATU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF319BJJ bed narrowPeak conservative idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021ZIA, ENCFF057EFZ, ENCFF427NOB 610605 ENCODE Processing Pipeline 0a42cd0593704887fbc7e521c224ec0e https://www.encodeproject.org/files/ENCFF319BJJ/@@download/ENCFF319BJJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF272JNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF319BJJ 1218293 ENCODE Processing Pipeline cfda2c5e0675526921a95a2f75a424b8 https://www.encodeproject.org/files/ENCFF272JNQ/@@download/ENCFF272JNQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF728WNY bed narrowPeak optimal idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF021ZIA, ENCFF057EFZ, ENCFF427NOB 697367 ENCODE Processing Pipeline edd5bdc63348ba18d02943acb10ad47f https://www.encodeproject.org/files/ENCFF728WNY/@@download/ENCFF728WNY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF955UXT bigBed narrowPeak optimal idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF728WNY 1355391 ENCODE Processing Pipeline 0b722ab789ecb21979c3b0caa4aa59bf https://www.encodeproject.org/files/ENCFF955UXT/@@download/ENCFF955UXT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF102UMV bigWig signal p-value ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF354GWS 1420097338 ENCODE Processing Pipeline 1754b42b09562ce6cfda3cf96934312e https://www.encodeproject.org/files/ENCFF102UMV/@@download/ENCFF102UMV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF400KJC bigWig signal p-value ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864ELR 1297911611 ENCODE Processing Pipeline 4bf212a257596d5c80e49bbce7bcede3 https://www.encodeproject.org/files/ENCFF400KJC/@@download/ENCFF400KJC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF558CGF bigWig signal p-value ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF354GWS, ENCFF864ELR 1967403633 ENCODE Processing Pipeline 772e9e8d5fc59540cc2824aae6297c18 https://www.encodeproject.org/files/ENCFF558CGF/@@download/ENCFF558CGF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF879NVX bigWig fold change over control ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF354GWS 1693836015 ENCODE Processing Pipeline 1ce28ae5a8abf3848f13b5d10bdd5a17 https://www.encodeproject.org/files/ENCFF879NVX/@@download/ENCFF879NVX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF259NFJ bigWig fold change over control ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864ELR 1652402217 ENCODE Processing Pipeline f2b2cc08828dbeaf3eede9ff558c8338 https://www.encodeproject.org/files/ENCFF259NFJ/@@download/ENCFF259NFJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF032ZFY bigWig fold change over control ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF354GWS, ENCFF864ELR 2269760579 ENCODE Processing Pipeline df8cdda33c0410159e68314ddeb6ee83 https://www.encodeproject.org/files/ENCFF032ZFY/@@download/ENCFF032ZFY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF684NDR bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF354GWS 7013770 ENCODE Processing Pipeline eb08fe7980a8ce3b83718175690c7f62 https://www.encodeproject.org/files/ENCFF684NDR/@@download/ENCFF684NDR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF647ELH bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF354GWS, ENCFF864ELR 7277866 ENCODE Processing Pipeline 26bd98fa79ce1aac016dd6f91afbf8be https://www.encodeproject.org/files/ENCFF647ELH/@@download/ENCFF647ELH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF551GMH bigBed narrowPeak conservative idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF726DPQ 1220093 ENCODE Processing Pipeline a772c8a288fca8568a46b1253b1154bc https://www.encodeproject.org/files/ENCFF551GMH/@@download/ENCFF551GMH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF285QVL bed narrowPeak optimal idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF151CRB, ENCFF419RSJ, ENCFF647ELH, ENCFF684NDR 685989 ENCODE Processing Pipeline 23a90291cf5de070ed0fbb4b0af32768 https://www.encodeproject.org/files/ENCFF285QVL/@@download/ENCFF285QVL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF151CRB bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864ELR 7036705 ENCODE Processing Pipeline 440d0a4c2499b590ff877971c2843e2a https://www.encodeproject.org/files/ENCFF151CRB/@@download/ENCFF151CRB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF512JEH bigBed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF684NDR 13416168 ENCODE Processing Pipeline 240060c9884a558c7dfbecc59e169a8e https://www.encodeproject.org/files/ENCFF512JEH/@@download/ENCFF512JEH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF610SGH bigBed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF151CRB 13461381 ENCODE Processing Pipeline 947f475db3350dc8392a3de07ba9d777 https://www.encodeproject.org/files/ENCFF610SGH/@@download/ENCFF610SGH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF637TVE bigBed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF647ELH 13431843 ENCODE Processing Pipeline d2c5dc3aa5783212c8ebfa836028edde https://www.encodeproject.org/files/ENCFF637TVE/@@download/ENCFF637TVE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF726DPQ bed narrowPeak conservative idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF151CRB, ENCFF419RSJ, ENCFF647ELH, ENCFF684NDR 611515 ENCODE Processing Pipeline a09eed6bd7ca0ed410066b85b4e250ec https://www.encodeproject.org/files/ENCFF726DPQ/@@download/ENCFF726DPQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF968PQN bigBed narrowPeak optimal idr thresholded peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF285QVL 1339108 ENCODE Processing Pipeline dd9397255dd17e379daf956394037cb7 https://www.encodeproject.org/files/ENCFF968PQN/@@download/ENCFF968PQN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF332WPE fastq reads ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF818OPZ 2098571337 Michael Snyder, Stanford a8b7c570dd0874be0f69e366e4c73167 SRA:SRR5112394 https://www.encodeproject.org/files/ENCFF332WPE/@@download/ENCFF332WPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF961HCT fastq reads ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF571HFF 1374211064 Michael Snyder, Stanford 1d287e17679e7fe7e6b0b30944351932 SRA:SRR5112395 https://www.encodeproject.org/files/ENCFF961HCT/@@download/ENCFF961HCT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF818OPZ fastq reads ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF332WPE 2168591026 Michael Snyder, Stanford 0f32382325f84ac519e812b3b8f900bb SRA:SRR5112394 https://www.encodeproject.org/files/ENCFF818OPZ/@@download/ENCFF818OPZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF571HFF fastq reads ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF961HCT 1390441122 Michael Snyder, Stanford 35bb33a2ba264b01512770fbe98cdfbd SRA:SRR5112395 https://www.encodeproject.org/files/ENCFF571HFF/@@download/ENCFF571HFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF650UUD bam unfiltered alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF571HFF, ENCFF643CGH, ENCFF961HCT 3207452442 ENCODE Processing Pipeline a981e9309d137b58db97c99f889f2407 https://www.encodeproject.org/files/ENCFF650UUD/@@download/ENCFF650UUD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF269ZBH bam unfiltered alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF571HFF, ENCFF807MUK, ENCFF961HCT 3202913191 ENCODE Processing Pipeline 1175b3825e15c0987e7ee1106104b5fb https://www.encodeproject.org/files/ENCFF269ZBH/@@download/ENCFF269ZBH.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF656XRT bam unfiltered alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF332WPE, ENCFF807MUK, ENCFF818OPZ 4757404017 ENCODE Processing Pipeline 36d7a09ec89340b928ae81c49c8a7aeb https://www.encodeproject.org/files/ENCFF656XRT/@@download/ENCFF656XRT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF004XRU bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF571HFF, ENCFF807MUK, ENCFF961HCT 2824789415 ENCODE Processing Pipeline 4e0fa6edf1e346fb76eea9be385cb08d https://www.encodeproject.org/files/ENCFF004XRU/@@download/ENCFF004XRU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF239VPD bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF571HFF, ENCFF643CGH, ENCFF961HCT 2826836903 ENCODE Processing Pipeline 878001d604bca097ee4c3622cd57a560 https://www.encodeproject.org/files/ENCFF239VPD/@@download/ENCFF239VPD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF802VUL bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF332WPE, ENCFF807MUK, ENCFF818OPZ 4150861572 ENCODE Processing Pipeline 0ef73df9f5a38e3322da6772e3f07df6 https://www.encodeproject.org/files/ENCFF802VUL/@@download/ENCFF802VUL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF146PZG bam unfiltered alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF332WPE, ENCFF643CGH, ENCFF818OPZ 4762953865 ENCODE Processing Pipeline d6f2247def79448eff3fb10811e199b7 https://www.encodeproject.org/files/ENCFF146PZG/@@download/ENCFF146PZG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF111JJX bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF332WPE, ENCFF643CGH, ENCFF818OPZ 4152509225 ENCODE Processing Pipeline a2db5002ec8c2d99aba9861bf90b0e37 https://www.encodeproject.org/files/ENCFF111JJX/@@download/ENCFF111JJX.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF735UBA bigWig signal p-value ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF802VUL 1461984227 ENCODE Processing Pipeline cbb44790842bc79db4001934767c7162 https://www.encodeproject.org/files/ENCFF735UBA/@@download/ENCFF735UBA.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF208BTH bigWig signal p-value ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF004XRU 1096622754 ENCODE Processing Pipeline 005811edacec032b5b52b95a6bf3a04f https://www.encodeproject.org/files/ENCFF208BTH/@@download/ENCFF208BTH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF589APE bigWig signal p-value ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF004XRU, ENCFF802VUL 1635858051 ENCODE Processing Pipeline ffed5671df5f2d6e1c678ef3e3a2024a https://www.encodeproject.org/files/ENCFF589APE/@@download/ENCFF589APE.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF440ONU bigWig fold change over control ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF802VUL 1330187228 ENCODE Processing Pipeline 0b98b3b64275a01fbf97c38269cd2bd4 https://www.encodeproject.org/files/ENCFF440ONU/@@download/ENCFF440ONU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF039LZN bigWig fold change over control ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF004XRU 1125920759 ENCODE Processing Pipeline 49fe0acb44967bc735be306ab2fc2aa1 https://www.encodeproject.org/files/ENCFF039LZN/@@download/ENCFF039LZN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF661TPP bigWig fold change over control ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF004XRU, ENCFF802VUL 1758504131 ENCODE Processing Pipeline 07586da278aa8f683867885b2122d0c2 https://www.encodeproject.org/files/ENCFF661TPP/@@download/ENCFF661TPP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF923UBI bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF802VUL 6764456 ENCODE Processing Pipeline 31effcca60421d1e8c60bf706b244152 https://www.encodeproject.org/files/ENCFF923UBI/@@download/ENCFF923UBI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF467RAB bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF004XRU, ENCFF802VUL 7121598 ENCODE Processing Pipeline f40137d1cbd54e186835ef2ea495ff28 https://www.encodeproject.org/files/ENCFF467RAB/@@download/ENCFF467RAB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF472PYP bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF004XRU 6342086 ENCODE Processing Pipeline 797184082d3583c3cd3187a2b3cb1f65 https://www.encodeproject.org/files/ENCFF472PYP/@@download/ENCFF472PYP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF142BVH bigBed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF923UBI 13367159 ENCODE Processing Pipeline 3753fd69a32e5dc4e057653d4efbf0d8 https://www.encodeproject.org/files/ENCFF142BVH/@@download/ENCFF142BVH.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF994RKG bigBed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF472PYP 11293086 ENCODE Processing Pipeline 6135199a73f019485eac89e147624071 https://www.encodeproject.org/files/ENCFF994RKG/@@download/ENCFF994RKG.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF692TQK bigBed narrowPeak conservative idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF789RZF 373355 ENCODE Processing Pipeline c9fa1aa2d0f1e2b8c04ba4f9c2828d86 https://www.encodeproject.org/files/ENCFF692TQK/@@download/ENCFF692TQK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF117XTQ bigBed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF467RAB 13214122 ENCODE Processing Pipeline 6b49370cc94cbea491eb30c2d91c3a08 https://www.encodeproject.org/files/ENCFF117XTQ/@@download/ENCFF117XTQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF789RZF bed narrowPeak conservative idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF467RAB, ENCFF472PYP, ENCFF923UBI 188221 ENCODE Processing Pipeline c6db578a0c91c1fa036dc46261ef04a1 https://www.encodeproject.org/files/ENCFF789RZF/@@download/ENCFF789RZF.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF306IZU bigBed narrowPeak optimal idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF159IBP 568592 ENCODE Processing Pipeline e3546c534ff375fed26ea59695d3234a https://www.encodeproject.org/files/ENCFF306IZU/@@download/ENCFF306IZU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF159IBP bed narrowPeak optimal idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF467RAB, ENCFF472PYP, ENCFF923UBI 260279 ENCODE Processing Pipeline b8bd7659b324acfb916daa707ef07e9b https://www.encodeproject.org/files/ENCFF159IBP/@@download/ENCFF159IBP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF380RHA bigWig signal p-value ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF111JJX 1284891968 ENCODE Processing Pipeline babe825429cad146ad46e4a03f6867a4 https://www.encodeproject.org/files/ENCFF380RHA/@@download/ENCFF380RHA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF506LIC bigWig signal p-value ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF239VPD 1269112407 ENCODE Processing Pipeline aaf6ae89cefadcae0245468e748eebf9 https://www.encodeproject.org/files/ENCFF506LIC/@@download/ENCFF506LIC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF380LFJ bigWig signal p-value ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF111JJX, ENCFF239VPD 1648534976 ENCODE Processing Pipeline 18cfe7904e1c1a5d0734bda683bdb8f3 https://www.encodeproject.org/files/ENCFF380LFJ/@@download/ENCFF380LFJ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF251KCQ bigWig fold change over control ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF111JJX 1312089538 ENCODE Processing Pipeline 6b1e049379eaedf487ba157d41cd4065 https://www.encodeproject.org/files/ENCFF251KCQ/@@download/ENCFF251KCQ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF215NAG bigWig fold change over control ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF239VPD 1111819155 ENCODE Processing Pipeline bc8518f950d323f96f516a8c70c9ebac https://www.encodeproject.org/files/ENCFF215NAG/@@download/ENCFF215NAG.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF609KBN bigWig fold change over control ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF111JJX, ENCFF239VPD 1799685563 ENCODE Processing Pipeline 6b6c3cf920b7d4cbde28fd1dbf445a6c https://www.encodeproject.org/files/ENCFF609KBN/@@download/ENCFF609KBN.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF449HJM bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF111JJX 6632032 ENCODE Processing Pipeline fc4f577fe363dc99ef87e7b362e95084 https://www.encodeproject.org/files/ENCFF449HJM/@@download/ENCFF449HJM.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF454ZCH bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF239VPD 6248066 ENCODE Processing Pipeline f5db06615694edd1194c80b8898f221f https://www.encodeproject.org/files/ENCFF454ZCH/@@download/ENCFF454ZCH.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF251CRY bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF111JJX, ENCFF239VPD 7071928 ENCODE Processing Pipeline d5234ee660e6174691294a4dbf8140d4 https://www.encodeproject.org/files/ENCFF251CRY/@@download/ENCFF251CRY.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF988HLI bigBed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF449HJM 13382812 ENCODE Processing Pipeline 5dbb2b3beeba8e4b3edd343f4f0c448f https://www.encodeproject.org/files/ENCFF988HLI/@@download/ENCFF988HLI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF784LDI bigBed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF251CRY 13230526 ENCODE Processing Pipeline 1b049148cf708c3e61c4ddb8866a29e8 https://www.encodeproject.org/files/ENCFF784LDI/@@download/ENCFF784LDI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF433OPJ bigBed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF454ZCH 11296705 ENCODE Processing Pipeline 0ca61094bc6dd2ed2fc8d9b2385de834 https://www.encodeproject.org/files/ENCFF433OPJ/@@download/ENCFF433OPJ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF900OBI bed narrowPeak conservative idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF251CRY, ENCFF419RSJ, ENCFF449HJM, ENCFF454ZCH 189585 ENCODE Processing Pipeline 2a80af31bbd4b5b2fc851743eef3c18d https://www.encodeproject.org/files/ENCFF900OBI/@@download/ENCFF900OBI.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF458WLS bigBed narrowPeak conservative idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF900OBI 448619 ENCODE Processing Pipeline dab97c2e2b427b2ccf08a26aed3ceb18 https://www.encodeproject.org/files/ENCFF458WLS/@@download/ENCFF458WLS.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF775QVY bed narrowPeak optimal idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF251CRY, ENCFF419RSJ, ENCFF449HJM, ENCFF454ZCH 263012 ENCODE Processing Pipeline e801181b146caec8585c52766bfdd480 https://www.encodeproject.org/files/ENCFF775QVY/@@download/ENCFF775QVY.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF708RAA bigBed narrowPeak optimal idr thresholded peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF775QVY 573576 ENCODE Processing Pipeline 5b25b3e45a3709e436f9b96d5114c0f6 https://www.encodeproject.org/files/ENCFF708RAA/@@download/ENCFF708RAA.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF653BTH fastq reads ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF460GBK 2123392711 Michael Snyder, Stanford 2925c9462e6090a2215bd46ed518be6f SRA:SRR5111821 https://www.encodeproject.org/files/ENCFF653BTH/@@download/ENCFF653BTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF688XKX fastq reads ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF742FEB 2490868664 Michael Snyder, Stanford d865e6b46bd83937b8281cc0039b42f7 SRA:SRR5111822 https://www.encodeproject.org/files/ENCFF688XKX/@@download/ENCFF688XKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF742FEB fastq reads ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF688XKX 2540142766 Michael Snyder, Stanford 59355a8724c333dad33ac6aeb3506726 SRA:SRR5111822 https://www.encodeproject.org/files/ENCFF742FEB/@@download/ENCFF742FEB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF460GBK fastq reads ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF653BTH 2191519256 Michael Snyder, Stanford ced4c07ad8fca4ba38ced84da0141018 SRA:SRR5111821 https://www.encodeproject.org/files/ENCFF460GBK/@@download/ENCFF460GBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF645AIO bam unfiltered alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF688XKX, ENCFF742FEB 5544129188 ENCODE Processing Pipeline 510a4e3035fe98e8345e194ee6d94dde https://www.encodeproject.org/files/ENCFF645AIO/@@download/ENCFF645AIO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF018WPB bam unfiltered alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF688XKX, ENCFF742FEB, ENCFF807MUK 5535613121 ENCODE Processing Pipeline e4d8cd4f3916752ae2262c6c29325c81 https://www.encodeproject.org/files/ENCFF018WPB/@@download/ENCFF018WPB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF734FXE bam unfiltered alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF460GBK, ENCFF653BTH, ENCFF807MUK 4777194398 ENCODE Processing Pipeline 343192c7d777902386c66ca743311aed https://www.encodeproject.org/files/ENCFF734FXE/@@download/ENCFF734FXE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF694CMK bam unfiltered alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF460GBK, ENCFF643CGH, ENCFF653BTH 4781470369 ENCODE Processing Pipeline 5822f73468816cb51e9ff9bd153c3ea0 https://www.encodeproject.org/files/ENCFF694CMK/@@download/ENCFF694CMK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF159KKU bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF460GBK, ENCFF653BTH, ENCFF807MUK 3917299676 ENCODE Processing Pipeline 3ca6098161ae128622aad0f386538990 https://www.encodeproject.org/files/ENCFF159KKU/@@download/ENCFF159KKU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF618YRD bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF460GBK, ENCFF643CGH, ENCFF653BTH 3920442544 ENCODE Processing Pipeline 1e8da333551d17d83b4296e91a3a646c https://www.encodeproject.org/files/ENCFF618YRD/@@download/ENCFF618YRD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF440OEL bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF688XKX, ENCFF742FEB, ENCFF807MUK 4782786434 ENCODE Processing Pipeline 3d09de8c958e963a3f8082b8e1bb658f https://www.encodeproject.org/files/ENCFF440OEL/@@download/ENCFF440OEL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF833MIU bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF688XKX, ENCFF742FEB 4786848536 ENCODE Processing Pipeline 5622756f2562ca8e7947fe5541dcafc6 https://www.encodeproject.org/files/ENCFF833MIU/@@download/ENCFF833MIU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF799IRQ bigWig signal p-value ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440OEL 1315423664 ENCODE Processing Pipeline 6b17a6a12cca172f862e3b86adede5b1 https://www.encodeproject.org/files/ENCFF799IRQ/@@download/ENCFF799IRQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF260QGV bigWig signal p-value ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159KKU 1286863046 ENCODE Processing Pipeline 4d42bd29d3452881480f173fe6a2d9c6 https://www.encodeproject.org/files/ENCFF260QGV/@@download/ENCFF260QGV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF321YEB bigWig signal p-value ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF159KKU, ENCFF440OEL 1716946807 ENCODE Processing Pipeline 4a40e816fe5ed40b1853353e44c47fac https://www.encodeproject.org/files/ENCFF321YEB/@@download/ENCFF321YEB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF310CUJ bigWig fold change over control ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440OEL 1428663141 ENCODE Processing Pipeline 1a76a027ad96ebe37c205afa64ba1e6f https://www.encodeproject.org/files/ENCFF310CUJ/@@download/ENCFF310CUJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF219IFA bigWig fold change over control ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159KKU 1318517432 ENCODE Processing Pipeline cd799254051f8af4e50d7f79446355ec https://www.encodeproject.org/files/ENCFF219IFA/@@download/ENCFF219IFA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF823NXK bigWig fold change over control ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF159KKU, ENCFF440OEL 1965510095 ENCODE Processing Pipeline 882e374d0803d0efe70989ee6b7d18ed https://www.encodeproject.org/files/ENCFF823NXK/@@download/ENCFF823NXK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF299XYT bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440OEL 6472306 ENCODE Processing Pipeline a7408eb5b90f2b20cb061dbe2d90397b https://www.encodeproject.org/files/ENCFF299XYT/@@download/ENCFF299XYT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF145XAX bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159KKU 6232868 ENCODE Processing Pipeline 3631cbbf61da180f58d5ac2991479cba https://www.encodeproject.org/files/ENCFF145XAX/@@download/ENCFF145XAX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF491DIV bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF159KKU, ENCFF440OEL 7141528 ENCODE Processing Pipeline 6f06521a322eb3c5b3b00aaa42ae3c2b https://www.encodeproject.org/files/ENCFF491DIV/@@download/ENCFF491DIV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF746CLN bigBed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF299XYT 11247739 ENCODE Processing Pipeline 5aa387c2a016b143edfbd0b30783fddd https://www.encodeproject.org/files/ENCFF746CLN/@@download/ENCFF746CLN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF857AQQ bigBed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF145XAX 11355802 ENCODE Processing Pipeline 8113b2fb40c2caed41eddb75fcdf435f https://www.encodeproject.org/files/ENCFF857AQQ/@@download/ENCFF857AQQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF160HGD bigBed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF491DIV 11482839 ENCODE Processing Pipeline a3225f42f0a8a8df8c956827ba58c8b7 https://www.encodeproject.org/files/ENCFF160HGD/@@download/ENCFF160HGD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF616VGK bed narrowPeak conservative idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF145XAX, ENCFF299XYT, ENCFF491DIV 105738 ENCODE Processing Pipeline 6a42350b058c329071659230ca943fb0 https://www.encodeproject.org/files/ENCFF616VGK/@@download/ENCFF616VGK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF133CFF bigBed narrowPeak conservative idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF616VGK 246939 ENCODE Processing Pipeline 9bbdd6413617c027a19596e33235c88f https://www.encodeproject.org/files/ENCFF133CFF/@@download/ENCFF133CFF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF495EIZ bed narrowPeak optimal idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF145XAX, ENCFF299XYT, ENCFF491DIV 116405 ENCODE Processing Pipeline c5353bfdbe6e3862183ff0a7e2b3c370 https://www.encodeproject.org/files/ENCFF495EIZ/@@download/ENCFF495EIZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF339HBP bigBed narrowPeak optimal idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF495EIZ 261605 ENCODE Processing Pipeline 14f438409a9dc36cecbe0412f6469620 https://www.encodeproject.org/files/ENCFF339HBP/@@download/ENCFF339HBP.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF818VSD bigWig signal p-value ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF833MIU 1412514086 ENCODE Processing Pipeline 100effd2e29810db142445076656ecfc https://www.encodeproject.org/files/ENCFF818VSD/@@download/ENCFF818VSD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF670BXO bigWig signal p-value ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF618YRD 1386529430 ENCODE Processing Pipeline 41f64edd868548f7d8bd56d18e918b1c https://www.encodeproject.org/files/ENCFF670BXO/@@download/ENCFF670BXO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF633ZPU bigWig signal p-value ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF618YRD, ENCFF833MIU 1888034214 ENCODE Processing Pipeline 2380d385ab682295e606f605f6896f36 https://www.encodeproject.org/files/ENCFF633ZPU/@@download/ENCFF633ZPU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF334WTR bigWig fold change over control ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF833MIU 1469467988 ENCODE Processing Pipeline 6a47bda734252418002e8d323c4ad364 https://www.encodeproject.org/files/ENCFF334WTR/@@download/ENCFF334WTR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF498ZZV bigWig fold change over control ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF618YRD 1306713696 ENCODE Processing Pipeline 8d3e00a056bbf10c3c015e661c61995d https://www.encodeproject.org/files/ENCFF498ZZV/@@download/ENCFF498ZZV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF627QFP bigWig fold change over control ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF618YRD, ENCFF833MIU 1957311126 ENCODE Processing Pipeline 8e7c50c70c6d76711b9259d2b1364d30 https://www.encodeproject.org/files/ENCFF627QFP/@@download/ENCFF627QFP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF488UOQ bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF833MIU 6308624 ENCODE Processing Pipeline efe58ccc2f5cf82475e67c8f570afab2 https://www.encodeproject.org/files/ENCFF488UOQ/@@download/ENCFF488UOQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF110BGJ bigBed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF488UOQ 11258789 ENCODE Processing Pipeline 18b681382dbbe467e1ba29bd7135a1ef https://www.encodeproject.org/files/ENCFF110BGJ/@@download/ENCFF110BGJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF002UQJ bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF618YRD 6033249 ENCODE Processing Pipeline 3c6cd56618ca14b3ad202ffbc132eca4 https://www.encodeproject.org/files/ENCFF002UQJ/@@download/ENCFF002UQJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF347GPU bed narrowPeak conservative idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF002UQJ, ENCFF284ZFM, ENCFF419RSJ, ENCFF488UOQ 106082 ENCODE Processing Pipeline ac329e3b57dea55e53667fb704a17c38 https://www.encodeproject.org/files/ENCFF347GPU/@@download/ENCFF347GPU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF284ZFM bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF618YRD, ENCFF833MIU 7042674 ENCODE Processing Pipeline 45bfad4a847578ca6b681088fd7058b4 https://www.encodeproject.org/files/ENCFF284ZFM/@@download/ENCFF284ZFM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF897XXC bigBed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF002UQJ 11345864 ENCODE Processing Pipeline 05bf703912cb6ed2f769b555bd85fec5 https://www.encodeproject.org/files/ENCFF897XXC/@@download/ENCFF897XXC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF908CIE bigBed narrowPeak conservative idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF347GPU 249596 ENCODE Processing Pipeline 5fb207e5ce2c9de217a0c24ec9ae12bc https://www.encodeproject.org/files/ENCFF908CIE/@@download/ENCFF908CIE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF419BSV bigBed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF284ZFM 11498387 ENCODE Processing Pipeline 70147429af9a063157cea2472d5da302 https://www.encodeproject.org/files/ENCFF419BSV/@@download/ENCFF419BSV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF080UUR bed narrowPeak optimal idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF002UQJ, ENCFF284ZFM, ENCFF419RSJ, ENCFF488UOQ 117233 ENCODE Processing Pipeline 86e24dd425e154800f13f46ff017d684 https://www.encodeproject.org/files/ENCFF080UUR/@@download/ENCFF080UUR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF003AMA bigBed narrowPeak optimal idr thresholded peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF080UUR 265470 ENCODE Processing Pipeline e546acac28018383a7595e99a79ee873 https://www.encodeproject.org/files/ENCFF003AMA/@@download/ENCFF003AMA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF876PMY fastq reads ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF912QAD 2003380842 Michael Snyder, Stanford 3da784bd20778498a98916491f202ab1 SRA:SRR5111615 https://www.encodeproject.org/files/ENCFF876PMY/@@download/ENCFF876PMY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF586BYR fastq reads ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF352PQY 2375833326 Michael Snyder, Stanford 7cbf24cedd0ffad012a43ff0db1571ec SRA:SRR5111614 https://www.encodeproject.org/files/ENCFF586BYR/@@download/ENCFF586BYR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF912QAD fastq reads ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF876PMY 2055650009 Michael Snyder, Stanford 0656995a96e9fda98a7f2fd165c6b734 SRA:SRR5111615 https://www.encodeproject.org/files/ENCFF912QAD/@@download/ENCFF912QAD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF352PQY fastq reads ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF586BYR 2443600877 Michael Snyder, Stanford 45e9735aae212ab0fcdad0140b1383d6 SRA:SRR5111614 https://www.encodeproject.org/files/ENCFF352PQY/@@download/ENCFF352PQY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF324MWD bam unfiltered alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF876PMY, ENCFF912QAD 4601806545 ENCODE Processing Pipeline b8d1d40c5fd9a9415397c8c5c344b313 https://www.encodeproject.org/files/ENCFF324MWD/@@download/ENCFF324MWD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF651ELM bam unfiltered alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF876PMY, ENCFF912QAD 4608807009 ENCODE Processing Pipeline 0771b9948526febe4660cdc195d78ed1 https://www.encodeproject.org/files/ENCFF651ELM/@@download/ENCFF651ELM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF633ORJ bam unfiltered alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF352PQY, ENCFF586BYR, ENCFF807MUK 5376735698 ENCODE Processing Pipeline 12adb3ebd8ba03e695370b2b7404b6d4 https://www.encodeproject.org/files/ENCFF633ORJ/@@download/ENCFF633ORJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF983WNG bam unfiltered alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF352PQY, ENCFF586BYR, ENCFF643CGH 5382833454 ENCODE Processing Pipeline 638d7bf6fd73d29f32ecb84d8ed438e3 https://www.encodeproject.org/files/ENCFF983WNG/@@download/ENCFF983WNG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF856TQX bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF876PMY, ENCFF912QAD 4007336017 ENCODE Processing Pipeline 4d1c7ba80fa6fce383e85b81facf3cdd https://www.encodeproject.org/files/ENCFF856TQX/@@download/ENCFF856TQX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF582UQP bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF876PMY, ENCFF912QAD 4009461634 ENCODE Processing Pipeline 60f934c20f438807b33ce62fe5799a30 https://www.encodeproject.org/files/ENCFF582UQP/@@download/ENCFF582UQP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF216HOT bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF352PQY, ENCFF586BYR, ENCFF807MUK 4583893523 ENCODE Processing Pipeline 01d76e9f444b5816597fc19b918f6363 https://www.encodeproject.org/files/ENCFF216HOT/@@download/ENCFF216HOT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF940EAU bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF352PQY, ENCFF586BYR, ENCFF643CGH 4586788588 ENCODE Processing Pipeline 44af9a9aa0fe64682dcad412026cd7b5 https://www.encodeproject.org/files/ENCFF940EAU/@@download/ENCFF940EAU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF516DZN bigWig signal p-value ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF856TQX 1429272950 ENCODE Processing Pipeline 668b83fcbf409cc8330427a039962f9c https://www.encodeproject.org/files/ENCFF516DZN/@@download/ENCFF516DZN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF604MZA bigWig signal p-value ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF216HOT, ENCFF856TQX 1425933328 ENCODE Processing Pipeline aec9913a88862eae5b200d5c6690b094 https://www.encodeproject.org/files/ENCFF604MZA/@@download/ENCFF604MZA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF613IVT bigWig signal p-value ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF216HOT 1452633637 ENCODE Processing Pipeline 88ce005b2ae5d5a9e799385005b6b606 https://www.encodeproject.org/files/ENCFF613IVT/@@download/ENCFF613IVT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF247FNW bigWig fold change over control ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF856TQX 1298943027 ENCODE Processing Pipeline 25597464a6d8c3d7b9c03364ce4607ed https://www.encodeproject.org/files/ENCFF247FNW/@@download/ENCFF247FNW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF525RQI bigWig fold change over control ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF216HOT 1407413267 ENCODE Processing Pipeline 2ce425f57533229cd234fa1518b30c6b https://www.encodeproject.org/files/ENCFF525RQI/@@download/ENCFF525RQI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF523FZZ bigWig fold change over control ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF216HOT, ENCFF856TQX 1927597948 ENCODE Processing Pipeline fd5d3bd02aecf4efba720a51307ddeb1 https://www.encodeproject.org/files/ENCFF523FZZ/@@download/ENCFF523FZZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF527ZED bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF856TQX 6570720 ENCODE Processing Pipeline e499059fd8cf76e0346799ed8654d42f https://www.encodeproject.org/files/ENCFF527ZED/@@download/ENCFF527ZED.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF985CPE bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF216HOT 6783551 ENCODE Processing Pipeline 4b94d3088a0d26dbb0efc4bc03853839 https://www.encodeproject.org/files/ENCFF985CPE/@@download/ENCFF985CPE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF798VDN bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF216HOT, ENCFF856TQX 7137698 ENCODE Processing Pipeline 176ad4257be6db6d942c5da786348811 https://www.encodeproject.org/files/ENCFF798VDN/@@download/ENCFF798VDN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF036SYJ bigBed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF527ZED 11335256 ENCODE Processing Pipeline f5e0794fad9d4fbcfb11065cf7d31066 https://www.encodeproject.org/files/ENCFF036SYJ/@@download/ENCFF036SYJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF215DWG bigBed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF985CPE 11321151 ENCODE Processing Pipeline c6d70f36c558034c5a9f38886f9268ed https://www.encodeproject.org/files/ENCFF215DWG/@@download/ENCFF215DWG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF296RAJ bigBed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF798VDN 11114730 ENCODE Processing Pipeline f39d72f02675b13505897dcf558251e1 https://www.encodeproject.org/files/ENCFF296RAJ/@@download/ENCFF296RAJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF963GZX bed narrowPeak conservative idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF527ZED, ENCFF798VDN, ENCFF985CPE 67068 ENCODE Processing Pipeline 0b5206079d194cb8e9dade36aeb4c376 https://www.encodeproject.org/files/ENCFF963GZX/@@download/ENCFF963GZX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF283SAB bigBed narrowPeak conservative idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF963GZX 156990 ENCODE Processing Pipeline 96c188cf0deddea4f45fc21f9d1d7f78 https://www.encodeproject.org/files/ENCFF283SAB/@@download/ENCFF283SAB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF419ASS bigBed narrowPeak optimal idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340UWW 230133 ENCODE Processing Pipeline 1a56e315fce5979979cb408fbe1b54f0 https://www.encodeproject.org/files/ENCFF419ASS/@@download/ENCFF419ASS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF340UWW bed narrowPeak optimal idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF527ZED, ENCFF798VDN, ENCFF985CPE 93108 ENCODE Processing Pipeline fe495cf60b20bfb4403c674739aecfe2 https://www.encodeproject.org/files/ENCFF340UWW/@@download/ENCFF340UWW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF478SAL bigWig signal p-value ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF582UQP, ENCFF940EAU 1499469679 ENCODE Processing Pipeline 9b02762a84b65ec2b95636650b11e72d https://www.encodeproject.org/files/ENCFF478SAL/@@download/ENCFF478SAL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF821GBQ bigWig signal p-value ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF940EAU 1372125075 ENCODE Processing Pipeline 3fb1e0e67d3ebf8c30030933fb3431de https://www.encodeproject.org/files/ENCFF821GBQ/@@download/ENCFF821GBQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF094SQT bigWig signal p-value ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF582UQP 1429791977 ENCODE Processing Pipeline 2929f60752583ba20bc98529412ee214 https://www.encodeproject.org/files/ENCFF094SQT/@@download/ENCFF094SQT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF175EFL bigWig fold change over control ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF582UQP 1298786650 ENCODE Processing Pipeline 52f94c8681e9c3798db44307f0fff0b4 https://www.encodeproject.org/files/ENCFF175EFL/@@download/ENCFF175EFL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF295AAT bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF582UQP 6445102 ENCODE Processing Pipeline bd378820120570ebdf58d156d928fdb4 https://www.encodeproject.org/files/ENCFF295AAT/@@download/ENCFF295AAT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF645BFB bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF940EAU 6611964 ENCODE Processing Pipeline cf715a7812d7b66fb71323cd1ce56db9 https://www.encodeproject.org/files/ENCFF645BFB/@@download/ENCFF645BFB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF861GEB bigWig fold change over control ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF582UQP, ENCFF940EAU 1940334504 ENCODE Processing Pipeline 97119233b13fd7144ab1e3113773dfc8 https://www.encodeproject.org/files/ENCFF861GEB/@@download/ENCFF861GEB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF575OMV bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF582UQP, ENCFF940EAU 7097680 ENCODE Processing Pipeline 475a28cc6c334eeec703167aa18d0f80 https://www.encodeproject.org/files/ENCFF575OMV/@@download/ENCFF575OMV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF582PGT bigBed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF295AAT 11343131 ENCODE Processing Pipeline 0da313b0b78c5d00969b8e8d06f30f97 https://www.encodeproject.org/files/ENCFF582PGT/@@download/ENCFF582PGT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF684FEZ bigBed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF645BFB 11343936 ENCODE Processing Pipeline 1f66ae0d37e1c065a339aed8d06f9612 https://www.encodeproject.org/files/ENCFF684FEZ/@@download/ENCFF684FEZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF618HGV bigWig fold change over control ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF940EAU 1420524946 ENCODE Processing Pipeline 95398ee2852f41cbfbf17b0925183db4 https://www.encodeproject.org/files/ENCFF618HGV/@@download/ENCFF618HGV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF036MSJ bigBed narrowPeak optimal idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF901CWB 231822 ENCODE Processing Pipeline 5cd84179c6fbc5aec853b474dfbde090 https://www.encodeproject.org/files/ENCFF036MSJ/@@download/ENCFF036MSJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF671FLY bigBed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF575OMV 11124536 ENCODE Processing Pipeline 73516621443672a34723f8978a23b161 https://www.encodeproject.org/files/ENCFF671FLY/@@download/ENCFF671FLY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF074NQW bed narrowPeak conservative idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF295AAT, ENCFF419RSJ, ENCFF575OMV, ENCFF645BFB 66136 ENCODE Processing Pipeline c423286667bcce426002db0a86381a5b https://www.encodeproject.org/files/ENCFF074NQW/@@download/ENCFF074NQW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF554CON bigBed narrowPeak conservative idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF074NQW 156748 ENCODE Processing Pipeline 4d1d9b447bc15623ab4319d50f1dab9c https://www.encodeproject.org/files/ENCFF554CON/@@download/ENCFF554CON.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF901CWB bed narrowPeak optimal idr thresholded peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF295AAT, ENCFF419RSJ, ENCFF575OMV, ENCFF645BFB 93727 ENCODE Processing Pipeline 69c63fa09ae460ac0ae345895d778099 https://www.encodeproject.org/files/ENCFF901CWB/@@download/ENCFF901CWB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF191GYB bam unfiltered alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF383AYS, ENCFF710PPD, ENCFF807MUK 4386378976 ENCODE Processing Pipeline 813d58ad455c96a98dd9ee3ff2f12a52 https://www.encodeproject.org/files/ENCFF191GYB/@@download/ENCFF191GYB.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF370TKX bam unfiltered alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF238TRM, ENCFF447WZH, ENCFF807MUK 4647997486 ENCODE Processing Pipeline d8287ee53720dcd7a332c4e55e488784 https://www.encodeproject.org/files/ENCFF370TKX/@@download/ENCFF370TKX.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF383AYS fastq reads ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 1 ENCFF710PPD 1967340735 Michael Snyder, Stanford fb8838685413b1b84e689fc873bd474c SRA:SRR5111044 https://www.encodeproject.org/files/ENCFF383AYS/@@download/ENCFF383AYS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF710PPD fastq reads ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 1 100 paired-ended 2 ENCFF383AYS 2010455509 Michael Snyder, Stanford 36cc1dba720ca8e530dcb929313c7f8b SRA:SRR5111044 https://www.encodeproject.org/files/ENCFF710PPD/@@download/ENCFF710PPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF447WZH fastq reads ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 1 ENCFF238TRM 2083404393 Michael Snyder, Stanford 1729f71214fff845a47177e596b82ce6 SRA:SRR5111043 https://www.encodeproject.org/files/ENCFF447WZH/@@download/ENCFF447WZH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF238TRM fastq reads ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 1 100 paired-ended 2 ENCFF447WZH 2124493373 Michael Snyder, Stanford 3601227a2c05d3ae1e1055334fb5aa6d SRA:SRR5111043 https://www.encodeproject.org/files/ENCFF238TRM/@@download/ENCFF238TRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF903MUJ bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF383AYS, ENCFF710PPD, ENCFF807MUK 3569626603 ENCODE Processing Pipeline e272bcda146924e2b1688e89bfa6928e https://www.encodeproject.org/files/ENCFF903MUJ/@@download/ENCFF903MUJ.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF308WNU bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF238TRM, ENCFF447WZH, ENCFF807MUK 3890881191 ENCODE Processing Pipeline 55bd3b4deb0e1a75a3735a5d828f86d6 https://www.encodeproject.org/files/ENCFF308WNU/@@download/ENCFF308WNU.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF943GBN bigWig signal p-value ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF903MUJ 957399862 ENCODE Processing Pipeline 922efc49309861d4f90010290254d038 https://www.encodeproject.org/files/ENCFF943GBN/@@download/ENCFF943GBN.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF247FQX bigWig fold change over control ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF903MUJ 1074855654 ENCODE Processing Pipeline 03ea4eee180e985dcd048f155e69cf43 https://www.encodeproject.org/files/ENCFF247FQX/@@download/ENCFF247FQX.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF966ITV bigWig signal p-value ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF308WNU 1091368013 ENCODE Processing Pipeline d2e61af49fa45fa4f82a562c67da8d3b https://www.encodeproject.org/files/ENCFF966ITV/@@download/ENCFF966ITV.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF720HPI bigWig fold change over control ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF308WNU 1077424227 ENCODE Processing Pipeline ef620e0757233b7071a32016d45c4985 https://www.encodeproject.org/files/ENCFF720HPI/@@download/ENCFF720HPI.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF204DTZ bigWig signal p-value ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF308WNU, ENCFF581ZJL, ENCFF903MUJ 1730937638 ENCODE Processing Pipeline 82407efc64f481707a683c08e16c4595 https://www.encodeproject.org/files/ENCFF204DTZ/@@download/ENCFF204DTZ.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF243CWO bigWig fold change over control ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF308WNU, ENCFF581ZJL, ENCFF903MUJ 1950990559 ENCODE Processing Pipeline c95c16d5d1c738804165600537c6cd4d https://www.encodeproject.org/files/ENCFF243CWO/@@download/ENCFF243CWO.bigWig hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF508CQR bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF308WNU, ENCFF581ZJL, ENCFF903MUJ 6202139 ENCODE Processing Pipeline ab27d8f45f974a913458d063b70a81cb https://www.encodeproject.org/files/ENCFF508CQR/@@download/ENCFF508CQR.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF415ATH bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF903MUJ 5480434 ENCODE Processing Pipeline e663731b6cbec67cbebc13b84865e7a6 https://www.encodeproject.org/files/ENCFF415ATH/@@download/ENCFF415ATH.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF397VOW bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF308WNU 5396166 ENCODE Processing Pipeline 2fb2202576ba8df823a78813e0b45aba https://www.encodeproject.org/files/ENCFF397VOW/@@download/ENCFF397VOW.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF497KQC bigBed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF415ATH 10416662 ENCODE Processing Pipeline 160d3cef7565f40229f43a14b0dbae3c https://www.encodeproject.org/files/ENCFF497KQC/@@download/ENCFF497KQC.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF095OFS bigBed narrowPeak conservative idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF559MJE 65111 ENCODE Processing Pipeline 6110d2c7e16fae72f26098e373903c8e https://www.encodeproject.org/files/ENCFF095OFS/@@download/ENCFF095OFS.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched status, mismatched file status ENCFF872YNU bed narrowPeak optimal idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF397VOW, ENCFF415ATH, ENCFF508CQR 7405 ENCODE Processing Pipeline ee5d6d997ebb23f6c456b49af593f6a6 https://www.encodeproject.org/files/ENCFF872YNU/@@download/ENCFF872YNU.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF922WXV bigBed narrowPeak optimal idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF514UBX 71417 ENCODE Processing Pipeline f1872f781624ac456357936d46b39375 https://www.encodeproject.org/files/ENCFF922WXV/@@download/ENCFF922WXV.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched status, mismatched file status ENCFF516LDB bigBed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF397VOW 10119024 ENCODE Processing Pipeline 05cdc886052c7b3c3d4e89471fb9b7c0 https://www.encodeproject.org/files/ENCFF516LDB/@@download/ENCFF516LDB.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF326NWF bed narrowPeak conservative idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF001TDO, ENCFF397VOW, ENCFF415ATH, ENCFF508CQR 2144 ENCODE Processing Pipeline a2b230274b13d559d71574aa4f04a0b8 https://www.encodeproject.org/files/ENCFF326NWF/@@download/ENCFF326NWF.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF687WUF bigBed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF508CQR 10051452 ENCODE Processing Pipeline 24c19914725f9e89fe35079504744234 https://www.encodeproject.org/files/ENCFF687WUF/@@download/ENCFF687WUF.bigBed hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF505ZCU bam unfiltered alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF383AYS, ENCFF643CGH, ENCFF710PPD 4391832009 ENCODE Processing Pipeline c99eb543072ddeac2cf324a55ba14770 https://www.encodeproject.org/files/ENCFF505ZCU/@@download/ENCFF505ZCU.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF584NCF bam unfiltered alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF238TRM, ENCFF447WZH, ENCFF643CGH 4653717793 ENCODE Processing Pipeline 6bccf28dad9a90a6947a91d73476ec44 https://www.encodeproject.org/files/ENCFF584NCF/@@download/ENCFF584NCF.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF125HKL bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF383AYS, ENCFF643CGH, ENCFF710PPD 3571437627 ENCODE Processing Pipeline e67eab9cbb2c3327732e3c2affdb5e4c https://www.encodeproject.org/files/ENCFF125HKL/@@download/ENCFF125HKL.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF046VNU bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF238TRM, ENCFF447WZH, ENCFF643CGH 3893144631 ENCODE Processing Pipeline f54ab04cffbddb0a498155a87f9782c7 https://www.encodeproject.org/files/ENCFF046VNU/@@download/ENCFF046VNU.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF110DXF bigWig signal p-value ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF125HKL, ENCFF910IKB 1047734735 ENCODE Processing Pipeline 70229df8935e3f3f16bcb3c55668f73c https://www.encodeproject.org/files/ENCFF110DXF/@@download/ENCFF110DXF.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF977KLF bigWig signal p-value ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF046VNU, ENCFF227IZS 1117551182 ENCODE Processing Pipeline 284b2070d88ad9d3378b188b6a8a67b9 https://www.encodeproject.org/files/ENCFF977KLF/@@download/ENCFF977KLF.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF746LIP bigWig signal p-value ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF046VNU, ENCFF125HKL, ENCFF227IZS, ENCFF910IKB 1672085224 ENCODE Processing Pipeline fcdd64e1d4b97589d60ffeb35d4371e4 https://www.encodeproject.org/files/ENCFF746LIP/@@download/ENCFF746LIP.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF672NLZ bigWig fold change over control ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF125HKL, ENCFF910IKB 1076988749 ENCODE Processing Pipeline 820b58dc781331f05107d3fc9bf40132 https://www.encodeproject.org/files/ENCFF672NLZ/@@download/ENCFF672NLZ.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF786TYS bigWig fold change over control ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF046VNU, ENCFF227IZS 1075219071 ENCODE Processing Pipeline 40699109d318d1bce9ac5241014d033f https://www.encodeproject.org/files/ENCFF786TYS/@@download/ENCFF786TYS.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF645VAU bigWig fold change over control ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF046VNU, ENCFF125HKL, ENCFF227IZS, ENCFF910IKB 1951433945 ENCODE Processing Pipeline d474d8fa4a2efbc4682b94cf2d38ba12 https://www.encodeproject.org/files/ENCFF645VAU/@@download/ENCFF645VAU.bigWig GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF692ENC bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF125HKL, ENCFF910IKB 5860619 ENCODE Processing Pipeline 7ac00cd675836b16b392758629b26b51 https://www.encodeproject.org/files/ENCFF692ENC/@@download/ENCFF692ENC.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF771QTQ bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF046VNU, ENCFF227IZS 5968414 ENCODE Processing Pipeline b17721e18b85f5e14d25f33295df7e3a https://www.encodeproject.org/files/ENCFF771QTQ/@@download/ENCFF771QTQ.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF694OEX bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF046VNU, ENCFF125HKL, ENCFF227IZS, ENCFF910IKB 6895952 ENCODE Processing Pipeline d37be6c274e633cc99cf1a6adfb34e35 https://www.encodeproject.org/files/ENCFF694OEX/@@download/ENCFF694OEX.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF742FTA bigBed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF692ENC 11160907 ENCODE Processing Pipeline cdf378188d13704665706a00a2877519 https://www.encodeproject.org/files/ENCFF742FTA/@@download/ENCFF742FTA.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF966MCV bigBed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF771QTQ 11124750 ENCODE Processing Pipeline 7767ff2e7f829948ce3f24044404d6aa https://www.encodeproject.org/files/ENCFF966MCV/@@download/ENCFF966MCV.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF287MFD bigBed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF694OEX 10984710 ENCODE Processing Pipeline 7eb7e463d9bc8fbb44f5b88a9fa271ef https://www.encodeproject.org/files/ENCFF287MFD/@@download/ENCFF287MFD.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF386ZWB bed narrowPeak conservative idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF692ENC, ENCFF694OEX, ENCFF771QTQ 2105 ENCODE Processing Pipeline 69c3ade3eaebd76afc0d8bc18b59f44b https://www.encodeproject.org/files/ENCFF386ZWB/@@download/ENCFF386ZWB.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF137PTI bigBed narrowPeak conservative idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF386ZWB 80350 ENCODE Processing Pipeline 26c413da46ac51702894ad85d6a55d59 https://www.encodeproject.org/files/ENCFF137PTI/@@download/ENCFF137PTI.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF603SXI bed narrowPeak optimal idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF692ENC, ENCFF694OEX, ENCFF771QTQ 7154 ENCODE Processing Pipeline 1507bf9a1624f8c26861bce02c5ab885 https://www.encodeproject.org/files/ENCFF603SXI/@@download/ENCFF603SXI.bed.gz GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF942SBG bigBed narrowPeak optimal idr thresholded peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1, 2 ENCFF603SXI 80959 ENCODE Processing Pipeline 594f1bd90cca1f089857f39ed6d8d48a https://www.encodeproject.org/files/ENCFF942SBG/@@download/ENCFF942SBG.bigBed GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF046DDP bam unfiltered alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF079PYC, ENCFF807MUK, ENCFF909OVD 5526618807 ENCODE Processing Pipeline 1148cf66dd614220662967bbe1e88593 https://www.encodeproject.org/files/ENCFF046DDP/@@download/ENCFF046DDP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF883RKR bam unfiltered alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF011GGX, ENCFF183DJQ, ENCFF807MUK 5573510305 ENCODE Processing Pipeline 1c7a08fbf53108426859bfd7c4ff72ea https://www.encodeproject.org/files/ENCFF883RKR/@@download/ENCFF883RKR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF909OVD fastq reads ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF079PYC 2543253935 Michael Snyder, Stanford 412257c54199d89e332d384cb911e0a8 SRA:SRR5111123 https://www.encodeproject.org/files/ENCFF909OVD/@@download/ENCFF909OVD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF011GGX fastq reads ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF183DJQ 2520660357 Michael Snyder, Stanford 6a02a3f3e820fd6407ca37d296e8c8a6 SRA:SRR5111122 https://www.encodeproject.org/files/ENCFF011GGX/@@download/ENCFF011GGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF183DJQ fastq reads ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF011GGX 2612408743 Michael Snyder, Stanford d2e908ab3ce3d493c2f398da39536e26 SRA:SRR5111122 https://www.encodeproject.org/files/ENCFF183DJQ/@@download/ENCFF183DJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF079PYC fastq reads ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF909OVD 2533688872 Michael Snyder, Stanford 3538e79850d2aee94540f949edd0ce1b SRA:SRR5111123 https://www.encodeproject.org/files/ENCFF079PYC/@@download/ENCFF079PYC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF509PRR bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF079PYC, ENCFF807MUK, ENCFF909OVD 4416626145 ENCODE Processing Pipeline 8fcd8f57e65018389ec7781c3ba5352f https://www.encodeproject.org/files/ENCFF509PRR/@@download/ENCFF509PRR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF869CLO bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF011GGX, ENCFF183DJQ, ENCFF807MUK 3973663115 ENCODE Processing Pipeline fa6a7a7b680778a5f3db85004f1a3dd7 https://www.encodeproject.org/files/ENCFF869CLO/@@download/ENCFF869CLO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF502QIV bam unfiltered alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF079PYC, ENCFF643CGH, ENCFF909OVD 5531421925 ENCODE Processing Pipeline 80d6aab123ef0f2e4774971a7c916150 https://www.encodeproject.org/files/ENCFF502QIV/@@download/ENCFF502QIV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF473THN bam unfiltered alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF011GGX, ENCFF183DJQ, ENCFF643CGH 5578802386 ENCODE Processing Pipeline 0a5e9bc5f073831b9c47c44eba12c87f https://www.encodeproject.org/files/ENCFF473THN/@@download/ENCFF473THN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF715AMR bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF079PYC, ENCFF643CGH, ENCFF909OVD 4418469896 ENCODE Processing Pipeline d226963d8824dd3e7b882aeef0897043 https://www.encodeproject.org/files/ENCFF715AMR/@@download/ENCFF715AMR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF195WOK bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF011GGX, ENCFF183DJQ, ENCFF643CGH 3975801179 ENCODE Processing Pipeline c3a376d513f47ce6778faf9fa1487cf8 https://www.encodeproject.org/files/ENCFF195WOK/@@download/ENCFF195WOK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF255BZW bigWig signal p-value ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF195WOK, ENCFF910IKB 1297557799 ENCODE Processing Pipeline 7490d44340b7503acd8d36b0f7a2e435 https://www.encodeproject.org/files/ENCFF255BZW/@@download/ENCFF255BZW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF521AAB bigWig signal p-value ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF715AMR 1148408509 ENCODE Processing Pipeline 3b637559db7bc23e892996ade3092592 https://www.encodeproject.org/files/ENCFF521AAB/@@download/ENCFF521AAB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF387BIY bigWig signal p-value ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF195WOK, ENCFF227IZS, ENCFF715AMR, ENCFF910IKB 1910088925 ENCODE Processing Pipeline eacc14fefa1dfd2f4aa9dc6c33799771 https://www.encodeproject.org/files/ENCFF387BIY/@@download/ENCFF387BIY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF855CIO bigWig fold change over control ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF195WOK, ENCFF910IKB 1125110925 ENCODE Processing Pipeline f91cd0d1801e03ffc51fa9cea10f1ecc https://www.encodeproject.org/files/ENCFF855CIO/@@download/ENCFF855CIO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF157UGB bigWig fold change over control ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF715AMR 1105341401 ENCODE Processing Pipeline add4ae2160051b5616ec716c4edd17ed https://www.encodeproject.org/files/ENCFF157UGB/@@download/ENCFF157UGB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF454AJP bigWig fold change over control ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF195WOK, ENCFF227IZS, ENCFF715AMR, ENCFF910IKB 2086171602 ENCODE Processing Pipeline dc2cd58eb32b3677698782712447743b https://www.encodeproject.org/files/ENCFF454AJP/@@download/ENCFF454AJP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF973DVW bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF715AMR 5920237 ENCODE Processing Pipeline 54fb633d2eece5a1f6e510ccce8eafba https://www.encodeproject.org/files/ENCFF973DVW/@@download/ENCFF973DVW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF918CHH bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF195WOK, ENCFF910IKB 5620574 ENCODE Processing Pipeline d7556b845affe37a5c42772f8c80c1bb https://www.encodeproject.org/files/ENCFF918CHH/@@download/ENCFF918CHH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF902FVT bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF195WOK, ENCFF227IZS, ENCFF715AMR, ENCFF910IKB 6892634 ENCODE Processing Pipeline 0d7cf528abea37e1f61ff21969efcf50 https://www.encodeproject.org/files/ENCFF902FVT/@@download/ENCFF902FVT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF625XBO bigBed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF918CHH 11336242 ENCODE Processing Pipeline 5b05ad9ea1029afe69c7b976238f2644 https://www.encodeproject.org/files/ENCFF625XBO/@@download/ENCFF625XBO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF893RKN bigBed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF973DVW 11187435 ENCODE Processing Pipeline 98db079e3dbfa0786c454625de2498a4 https://www.encodeproject.org/files/ENCFF893RKN/@@download/ENCFF893RKN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF487XNQ bigBed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF902FVT 11187762 ENCODE Processing Pipeline afc2fcf9fbdcdb3969e00a3291fc1921 https://www.encodeproject.org/files/ENCFF487XNQ/@@download/ENCFF487XNQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF740JCX bed narrowPeak conservative idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF902FVT, ENCFF918CHH, ENCFF973DVW 9514 ENCODE Processing Pipeline 14d7be275e791a1a1db454b1e27c4fc6 https://www.encodeproject.org/files/ENCFF740JCX/@@download/ENCFF740JCX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF520DIY bed narrowPeak optimal idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF902FVT, ENCFF918CHH, ENCFF973DVW 25433 ENCODE Processing Pipeline 9fe8d8108be9a9a2a89fc11da7c04f03 https://www.encodeproject.org/files/ENCFF520DIY/@@download/ENCFF520DIY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF648NHE bigBed narrowPeak conservative idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF740JCX 69240 ENCODE Processing Pipeline d75e6ff5033edf6549fb7c870440c58d https://www.encodeproject.org/files/ENCFF648NHE/@@download/ENCFF648NHE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF224UXR bigBed narrowPeak optimal idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF520DIY 96362 ENCODE Processing Pipeline 67b7abd1ef2020087840c0198479954a https://www.encodeproject.org/files/ENCFF224UXR/@@download/ENCFF224UXR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF706LIT bed narrowPeak optimal idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF609DTK, ENCFF669CKL, ENCFF749VLH 26921 ENCODE Processing Pipeline 1fde054e4ffdaa0d943623283ebc001a https://www.encodeproject.org/files/ENCFF706LIT/@@download/ENCFF706LIT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF132NUJ bigWig fold change over control ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF869CLO 1131565250 ENCODE Processing Pipeline 05c2054009b346f26d16a83a7052f510 https://www.encodeproject.org/files/ENCFF132NUJ/@@download/ENCFF132NUJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF306NXS bigWig fold change over control ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF509PRR 1115532069 ENCODE Processing Pipeline b268bb1fb726e2384904a431f56bf7cf https://www.encodeproject.org/files/ENCFF306NXS/@@download/ENCFF306NXS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF424GQF bigWig fold change over control ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF509PRR, ENCFF581ZJL, ENCFF869CLO 2102078623 ENCODE Processing Pipeline e88d498b49cf06c27fb15cc574a30f21 https://www.encodeproject.org/files/ENCFF424GQF/@@download/ENCFF424GQF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF749VLH bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF509PRR, ENCFF581ZJL, ENCFF869CLO 6885687 ENCODE Processing Pipeline 3cdd62a71274791f962614d9d85b3c5c https://www.encodeproject.org/files/ENCFF749VLH/@@download/ENCFF749VLH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF681HIB bigBed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF609DTK 11319847 ENCODE Processing Pipeline 9bd97186c7f004a9a8c1b48fc879dbb5 https://www.encodeproject.org/files/ENCFF681HIB/@@download/ENCFF681HIB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF015BVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF706LIT 97126 ENCODE Processing Pipeline b14749d9818a5ee4224325226e694608 https://www.encodeproject.org/files/ENCFF015BVQ/@@download/ENCFF015BVQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF886UVT bigWig signal p-value ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF509PRR 1016143075 ENCODE Processing Pipeline 594ad54c13341f08f97597848234d682 https://www.encodeproject.org/files/ENCFF886UVT/@@download/ENCFF886UVT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF550TQH bigWig signal p-value ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF509PRR, ENCFF581ZJL, ENCFF869CLO 2022587676 ENCODE Processing Pipeline bb98f4e39925e8ba3380db9b1d8a78be https://www.encodeproject.org/files/ENCFF550TQH/@@download/ENCFF550TQH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF609DTK bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF869CLO 5620010 ENCODE Processing Pipeline 13acb9cf6ce2e69b859c7aabf99aaa7e https://www.encodeproject.org/files/ENCFF609DTK/@@download/ENCFF609DTK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF669CKL bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF509PRR 5169710 ENCODE Processing Pipeline d898317747cf0dc762e0cc49c37d2566 https://www.encodeproject.org/files/ENCFF669CKL/@@download/ENCFF669CKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF444SWI bigBed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF669CKL 10077715 ENCODE Processing Pipeline a9777f1f3ba98c65d8bd0229ba5ac706 https://www.encodeproject.org/files/ENCFF444SWI/@@download/ENCFF444SWI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF470KXO bigBed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF749VLH 11200146 ENCODE Processing Pipeline dff087a6a4710d1f365513dd8d310b8b https://www.encodeproject.org/files/ENCFF470KXO/@@download/ENCFF470KXO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF449NTP bigWig signal p-value ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF869CLO 1192591392 ENCODE Processing Pipeline 3c7a450b051a61495f73bef3f24dea88 https://www.encodeproject.org/files/ENCFF449NTP/@@download/ENCFF449NTP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF876GPT bigBed narrowPeak conservative idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF452VYJ 68322 ENCODE Processing Pipeline b41c68fb9b4586ab4f6ca913fb27fbb3 https://www.encodeproject.org/files/ENCFF876GPT/@@download/ENCFF876GPT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF452VYJ bed narrowPeak conservative idr thresholded peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF609DTK, ENCFF669CKL, ENCFF749VLH 9905 ENCODE Processing Pipeline 2050dce921d0d27c91ba8d0a271771a6 https://www.encodeproject.org/files/ENCFF452VYJ/@@download/ENCFF452VYJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF064GRX bam unfiltered alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWQ, ENCFF807MUK 950461342 ENCODE Processing Pipeline 34838dce5a8b00f132dc574e18c3cb87 https://www.encodeproject.org/files/ENCFF064GRX/@@download/ENCFF064GRX.bam hg19 released low read length, low read depth ENCFF902RKT bam unfiltered alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWL, ENCFF807MUK 965621764 ENCODE Processing Pipeline 7abecd3eca10273ea515bf6d46c6003d https://www.encodeproject.org/files/ENCFF902RKT/@@download/ENCFF902RKT.bam hg19 released low read length, low read depth ENCFF002EWL fastq reads ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 1 36 single-ended 782959243 Michael Snyder, Stanford 5127ab9a4a2e43a3d75c2fe11738b1aa SRA:SRR5112229 https://www.encodeproject.org/files/ENCFF002EWL/@@download/ENCFF002EWL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, low read depth ENCFF002EWQ fastq reads ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 1 36 single-ended 771329231 Michael Snyder, Stanford 4b01ab588622ea4d87717a71bd9bbe3d SRA:SRR5112228 https://www.encodeproject.org/files/ENCFF002EWQ/@@download/ENCFF002EWQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, low read depth ENCFF142DHE bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWL, ENCFF807MUK 684222439 ENCODE Processing Pipeline 827004a5833f37a501dddab4137ad654 https://www.encodeproject.org/files/ENCFF142DHE/@@download/ENCFF142DHE.bam hg19 released low read length, low read depth ENCFF169POV bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWQ, ENCFF807MUK 637993501 ENCODE Processing Pipeline c58cddb267ce40bcf76573d0e831a443 https://www.encodeproject.org/files/ENCFF169POV/@@download/ENCFF169POV.bam hg19 released low read length, low read depth ENCFF515ECY bigBed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF656CUX 13165267 ENCODE Processing Pipeline 87ae6d3ab9341fe1be35479fc4cdcc47 https://www.encodeproject.org/files/ENCFF515ECY/@@download/ENCFF515ECY.bigBed hg19 released low read length, low read depth ENCFF927YWD bigWig signal p-value ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF142DHE, ENCFF335IPE 587608876 ENCODE Processing Pipeline 7b65642d385e214befb793f15b7a3354 https://www.encodeproject.org/files/ENCFF927YWD/@@download/ENCFF927YWD.bigWig hg19 released low read length, low read depth ENCFF040DGA bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF169POV, ENCFF879OQC 5183776 ENCODE Processing Pipeline d9c3da1be91de8c8c2e9fa1a52c88cdc https://www.encodeproject.org/files/ENCFF040DGA/@@download/ENCFF040DGA.bed.gz hg19 released low read length, low read depth ENCFF511MUZ bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF142DHE, ENCFF169POV, ENCFF335IPE, ENCFF879OQC 6576913 ENCODE Processing Pipeline 68449846a7b35262d721f508bfd0d5d4 https://www.encodeproject.org/files/ENCFF511MUZ/@@download/ENCFF511MUZ.bed.gz hg19 released low read length, low read depth ENCFF380EJH bigWig signal p-value ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF142DHE, ENCFF169POV, ENCFF335IPE, ENCFF879OQC 977582960 ENCODE Processing Pipeline 07a527068a413589b3068520051cf66b https://www.encodeproject.org/files/ENCFF380EJH/@@download/ENCFF380EJH.bigWig hg19 released low read length, low read depth ENCFF181YKE bigWig fold change over control ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF142DHE, ENCFF169POV, ENCFF335IPE, ENCFF879OQC 869611657 ENCODE Processing Pipeline 84075c89bcb37391b9bbd35220ed5fbe https://www.encodeproject.org/files/ENCFF181YKE/@@download/ENCFF181YKE.bigWig hg19 released low read length, low read depth ENCFF365UEM bigWig signal p-value ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF169POV, ENCFF879OQC 496019400 ENCODE Processing Pipeline fe3f6d11e78e3d2a3fbd79410917dd8c https://www.encodeproject.org/files/ENCFF365UEM/@@download/ENCFF365UEM.bigWig hg19 released low read length, low read depth ENCFF865WJI bigWig fold change over control ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF142DHE, ENCFF335IPE 390896763 ENCODE Processing Pipeline 5c69708a8384d886c5bccac05dadb574 https://www.encodeproject.org/files/ENCFF865WJI/@@download/ENCFF865WJI.bigWig hg19 released low read length, low read depth ENCFF316MAN bigWig fold change over control ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF169POV, ENCFF879OQC 352340545 ENCODE Processing Pipeline 275bdab18299a1391ae39c5db4b393a0 https://www.encodeproject.org/files/ENCFF316MAN/@@download/ENCFF316MAN.bigWig hg19 released low read length, low read depth ENCFF384ICP bigBed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF040DGA 10883350 ENCODE Processing Pipeline ab8ee4d22a4ecae64b07eccf30d25376 https://www.encodeproject.org/files/ENCFF384ICP/@@download/ENCFF384ICP.bigBed hg19 released low read length, low read depth ENCFF540HHN bigBed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF511MUZ 13292659 ENCODE Processing Pipeline fa2b324b0cbfc0de4c4cdafc4f1d0b99 https://www.encodeproject.org/files/ENCFF540HHN/@@download/ENCFF540HHN.bigBed hg19 released low read length, low read depth ENCFF656CUX bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF142DHE, ENCFF335IPE 5509302 ENCODE Processing Pipeline 942fb93cdd4270c3101187df6db73966 https://www.encodeproject.org/files/ENCFF656CUX/@@download/ENCFF656CUX.bed.gz hg19 released low read length, low read depth ENCFF752RHL bam unfiltered alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWL, ENCFF643CGH 969572865 ENCODE Processing Pipeline 95a0b077144295f4cfb30d35ef6cc0cc https://www.encodeproject.org/files/ENCFF752RHL/@@download/ENCFF752RHL.bam GRCh38 released low read length, low read depth ENCFF359UJQ bam unfiltered alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWQ, ENCFF643CGH 954488521 ENCODE Processing Pipeline 9ebcf4c47ec8e5cbb039fba09a40dd3f https://www.encodeproject.org/files/ENCFF359UJQ/@@download/ENCFF359UJQ.bam GRCh38 released low read length, low read depth ENCFF071KOM bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWL, ENCFF643CGH 683721458 ENCODE Processing Pipeline 108239b49ca7146ee85240e2e9d46e96 https://www.encodeproject.org/files/ENCFF071KOM/@@download/ENCFF071KOM.bam GRCh38 released low read length, low read depth ENCFF236ZUN bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWQ, ENCFF643CGH 637516364 ENCODE Processing Pipeline b7b7915f67625dc7d6aeeca40396539e https://www.encodeproject.org/files/ENCFF236ZUN/@@download/ENCFF236ZUN.bam GRCh38 released low read length, low read depth ENCFF117CUT bigWig signal p-value ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF071KOM, ENCFF156FED 474913174 ENCODE Processing Pipeline 42cf6023b9715b84ce54f654334aa5c5 https://www.encodeproject.org/files/ENCFF117CUT/@@download/ENCFF117CUT.bigWig GRCh38 released low read length, low read depth ENCFF584ZQG bigWig signal p-value ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF236ZUN, ENCFF577FNG 440144057 ENCODE Processing Pipeline f215e209cd8591389bfefaa4cd1756c3 https://www.encodeproject.org/files/ENCFF584ZQG/@@download/ENCFF584ZQG.bigWig GRCh38 released low read length, low read depth ENCFF683FPP bigWig signal p-value ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF071KOM, ENCFF156FED, ENCFF236ZUN, ENCFF577FNG 912603960 ENCODE Processing Pipeline 8b058967e75d2a5761783cdf177218bc https://www.encodeproject.org/files/ENCFF683FPP/@@download/ENCFF683FPP.bigWig GRCh38 released low read length, low read depth ENCFF285YVY bigWig fold change over control ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF071KOM, ENCFF156FED 398206128 ENCODE Processing Pipeline 4a14ceca315d760da950459bdf1ee3ba https://www.encodeproject.org/files/ENCFF285YVY/@@download/ENCFF285YVY.bigWig GRCh38 released low read length, low read depth ENCFF332RUF bigWig fold change over control ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF236ZUN, ENCFF577FNG 360575643 ENCODE Processing Pipeline 4946b917dd8b66b345ea941f8c1054b0 https://www.encodeproject.org/files/ENCFF332RUF/@@download/ENCFF332RUF.bigWig GRCh38 released low read length, low read depth ENCFF933HRZ bigWig fold change over control ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF071KOM, ENCFF156FED, ENCFF236ZUN, ENCFF577FNG 873003975 ENCODE Processing Pipeline 68498cb65ae0475df43a22cc7edd6299 https://www.encodeproject.org/files/ENCFF933HRZ/@@download/ENCFF933HRZ.bigWig GRCh38 released low read length, low read depth ENCFF754IPA bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF071KOM, ENCFF156FED 5352511 ENCODE Processing Pipeline fa8eec71959d25b682dfb21f43951c1d https://www.encodeproject.org/files/ENCFF754IPA/@@download/ENCFF754IPA.bed.gz GRCh38 released low read length, low read depth ENCFF668AKQ bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF236ZUN, ENCFF577FNG 5014630 ENCODE Processing Pipeline 4049c27a5843a5815bf35159520dbd49 https://www.encodeproject.org/files/ENCFF668AKQ/@@download/ENCFF668AKQ.bed.gz GRCh38 released low read length, low read depth ENCFF888HUZ bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF071KOM, ENCFF156FED, ENCFF236ZUN, ENCFF577FNG 6409968 ENCODE Processing Pipeline 37aade51ca8c101b19a1ba9287be93d0 https://www.encodeproject.org/files/ENCFF888HUZ/@@download/ENCFF888HUZ.bed.gz GRCh38 released low read length, low read depth ENCFF550ZWG bigBed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF668AKQ 10819664 ENCODE Processing Pipeline 69f2b5d452ca1460879c3a9648b8185b https://www.encodeproject.org/files/ENCFF550ZWG/@@download/ENCFF550ZWG.bigBed GRCh38 released low read length, low read depth ENCFF329HLY bed narrowPeak conservative idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF668AKQ, ENCFF754IPA, ENCFF888HUZ 206776 ENCODE Processing Pipeline 1c824728b9b5a4a4405445ae382afbc2 https://www.encodeproject.org/files/ENCFF329HLY/@@download/ENCFF329HLY.bed.gz GRCh38 released low read length, low read depth ENCFF849AUA bigBed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF754IPA 13093617 ENCODE Processing Pipeline b2e643c809a887eb82341a1cc3d80508 https://www.encodeproject.org/files/ENCFF849AUA/@@download/ENCFF849AUA.bigBed GRCh38 released low read length, low read depth ENCFF049SYU bigBed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF888HUZ 13285460 ENCODE Processing Pipeline 1c8bbf3ac033d340bbe79b9e17235645 https://www.encodeproject.org/files/ENCFF049SYU/@@download/ENCFF049SYU.bigBed GRCh38 released low read length, low read depth ENCFF604RVC bigBed narrowPeak conservative idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF329HLY 417757 ENCODE Processing Pipeline c536fef19aaf9a92910a09a9201b3798 https://www.encodeproject.org/files/ENCFF604RVC/@@download/ENCFF604RVC.bigBed GRCh38 released low read length, low read depth ENCFF704VDI bed narrowPeak optimal idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF419RSJ, ENCFF668AKQ, ENCFF754IPA, ENCFF888HUZ 215226 ENCODE Processing Pipeline d73efa30d687f0d6906ccc21b9513aa8 https://www.encodeproject.org/files/ENCFF704VDI/@@download/ENCFF704VDI.bed.gz GRCh38 released low read length, low read depth ENCFF398CYU bigBed narrowPeak optimal idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF704VDI 430792 ENCODE Processing Pipeline 14a07d144782e1dae4d2296f3b22ddb4 https://www.encodeproject.org/files/ENCFF398CYU/@@download/ENCFF398CYU.bigBed GRCh38 released low read length, low read depth ENCFF090QJO bed narrowPeak conservative idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF040DGA, ENCFF511MUZ, ENCFF656CUX 180739 ENCODE Processing Pipeline e3cadc3a3da564b018420bd1c26738f9 https://www.encodeproject.org/files/ENCFF090QJO/@@download/ENCFF090QJO.bed.gz hg19 released low read length, low read depth ENCFF163VUK bed narrowPeak optimal idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF040DGA, ENCFF511MUZ, ENCFF656CUX 217692 ENCODE Processing Pipeline c743b22b355085c49a0ee67adfa8f5f2 https://www.encodeproject.org/files/ENCFF163VUK/@@download/ENCFF163VUK.bed.gz hg19 released low read length, low read depth ENCFF799FES bigBed narrowPeak conservative idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF090QJO 380553 ENCODE Processing Pipeline 7027cb9a1d1ab923a3f2329adaca5ef0 https://www.encodeproject.org/files/ENCFF799FES/@@download/ENCFF799FES.bigBed hg19 released low read length, low read depth ENCFF569QID bigBed narrowPeak optimal idr thresholded peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF163VUK 430758 ENCODE Processing Pipeline e52e0814ae676769508808b841e4ad5d https://www.encodeproject.org/files/ENCFF569QID/@@download/ENCFF569QID.bigBed hg19 released low read length, low read depth ENCFF830COG bam unfiltered alignments ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF385KCF, ENCFF807MUK, ENCFF897CNI 2886458274 ENCODE Processing Pipeline 912795b7ca3b3804ab0e163543bdc8c1 https://www.encodeproject.org/files/ENCFF830COG/@@download/ENCFF830COG.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF385KCF fastq reads ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF897CNI 1304027269 Michael Snyder, Stanford fa56fec20040e2d051700470d6c37c8e SRA:SRR6214215 https://www.encodeproject.org/files/ENCFF385KCF/@@download/ENCFF385KCF.fastq.gz Illumina HiSeq 2000 /files/ENCFF788LAN/ released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF897CNI fastq reads ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF385KCF 1305987961 Michael Snyder, Stanford b342f0dc9acc82b00bac3d200741dddc SRA:SRR6214215 https://www.encodeproject.org/files/ENCFF897CNI/@@download/ENCFF897CNI.fastq.gz Illumina HiSeq 2000 /files/ENCFF663SAA/ released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF982YZF bam alignments ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF385KCF, ENCFF807MUK, ENCFF897CNI 2171122455 ENCODE Processing Pipeline aab67379275e700556ec1226c4cee92d https://www.encodeproject.org/files/ENCFF982YZF/@@download/ENCFF982YZF.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF540VML bam unfiltered alignments ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF385KCF, ENCFF643CGH, ENCFF897CNI 2890233674 ENCODE Processing Pipeline c6163e0cb32b8fcd3794d4d449b3b42a https://www.encodeproject.org/files/ENCFF540VML/@@download/ENCFF540VML.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF997ZMP bam alignments ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF385KCF, ENCFF643CGH, ENCFF897CNI 2173305434 ENCODE Processing Pipeline 468960c001f56e9bdbc6d3aac5086329 https://www.encodeproject.org/files/ENCFF997ZMP/@@download/ENCFF997ZMP.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF890LPO bigBed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF927QZZ 10593067 ENCODE Processing Pipeline 8dd9222039a39ccd2cc9b40797c4b3d7 https://www.encodeproject.org/files/ENCFF890LPO/@@download/ENCFF890LPO.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF973ISL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF927QZZ 13547 ENCODE Processing Pipeline f7113629efdfe6fefcc56716b1a66154 https://www.encodeproject.org/files/ENCFF973ISL/@@download/ENCFF973ISL.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF157GUL bigWig signal p-value ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF329KGR, ENCFF982YZF 596572648 ENCODE Processing Pipeline c41c0b4eaade5359dd01feb080cceab3 https://www.encodeproject.org/files/ENCFF157GUL/@@download/ENCFF157GUL.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF955FEK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF973ISL 90730 ENCODE Processing Pipeline 9e132ccf6b8dfedb26a33cb736be3856 https://www.encodeproject.org/files/ENCFF955FEK/@@download/ENCFF955FEK.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF927QZZ bed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF329KGR, ENCFF982YZF 4171062 ENCODE Processing Pipeline e6b6602f40460f8ff484ddd7ba20c247 https://www.encodeproject.org/files/ENCFF927QZZ/@@download/ENCFF927QZZ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF830XOG bigWig fold change over control ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF329KGR, ENCFF982YZF 500168874 ENCODE Processing Pipeline ec39f06c1446046aadecb002c5a777db https://www.encodeproject.org/files/ENCFF830XOG/@@download/ENCFF830XOG.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF208JPL bed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF667KCG, ENCFF997ZMP 4169408 ENCODE Processing Pipeline aee5e716384b904e91adf7f2c83bda8e https://www.encodeproject.org/files/ENCFF208JPL/@@download/ENCFF208JPL.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF067NXV bigBed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF208JPL 10616512 ENCODE Processing Pipeline eca4719898ba1414aea15483282560a0 https://www.encodeproject.org/files/ENCFF067NXV/@@download/ENCFF067NXV.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF518OSZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF688KFE 90299 ENCODE Processing Pipeline 363536af95778029bd59c864cba4e5c8 https://www.encodeproject.org/files/ENCFF518OSZ/@@download/ENCFF518OSZ.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF339YMP bigWig signal p-value ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF667KCG, ENCFF997ZMP 496658542 ENCODE Processing Pipeline 129ad9388c566d5e8915e5e09d552621 https://www.encodeproject.org/files/ENCFF339YMP/@@download/ENCFF339YMP.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF966IHQ bigWig fold change over control ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF667KCG, ENCFF997ZMP 502023551 ENCODE Processing Pipeline ee173eb929ef117c4e4a7f38133ffde9 https://www.encodeproject.org/files/ENCFF966IHQ/@@download/ENCFF966IHQ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF688KFE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF208JPL, ENCFF419RSJ 13138 ENCODE Processing Pipeline fdf00ab7e2e3beb37b9880e597c519d3 https://www.encodeproject.org/files/ENCFF688KFE/@@download/ENCFF688KFE.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF218LAW fastq reads ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 2758145862 Bradley Bernstein, Broad 1a880353c929ca1eda2e03b0dee9b232 https://www.encodeproject.org/files/ENCFF218LAW/@@download/ENCFF218LAW.fastq.gz Illumina HiSeq 2500 /files/ENCFF116APJ/, /files/ENCFF355WSL/ released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF095ZXW fastq reads ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 2757463069 Bradley Bernstein, Broad bde4e519f82813003232e3f87eb0be06 https://www.encodeproject.org/files/ENCFF095ZXW/@@download/ENCFF095ZXW.fastq.gz Illumina HiSeq 2500 /files/ENCFF116APJ/, /files/ENCFF355WSL/ released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF322UPH bam unfiltered alignments ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF095ZXW, ENCFF218LAW, ENCFF807MUK 4931389014 ENCODE Processing Pipeline ab85e7da637af6abb3928c49de72d0c9 https://www.encodeproject.org/files/ENCFF322UPH/@@download/ENCFF322UPH.bam hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF214PDY bam alignments ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF095ZXW, ENCFF218LAW, ENCFF807MUK 4016400460 ENCODE Processing Pipeline 85d30f17aaa9e63b4463bf1ad782f3b8 https://www.encodeproject.org/files/ENCFF214PDY/@@download/ENCFF214PDY.bam hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF356NYX bam unfiltered alignments ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF095ZXW, ENCFF218LAW, ENCFF643CGH 4941737388 ENCODE Processing Pipeline 793f4b9f19ff06577a2eece90d075428 https://www.encodeproject.org/files/ENCFF356NYX/@@download/ENCFF356NYX.bam GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF151UNX bam alignments ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF095ZXW, ENCFF218LAW, ENCFF643CGH 4021508634 ENCODE Processing Pipeline bd518cb2e97c9290529d853770adcff4 https://www.encodeproject.org/files/ENCFF151UNX/@@download/ENCFF151UNX.bam GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF876XDH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF096XNZ 819518 ENCODE Processing Pipeline 4225ab13c3c33e87c741c62e31e53d21 https://www.encodeproject.org/files/ENCFF876XDH/@@download/ENCFF876XDH.bigBed hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF134MNJ bigWig signal p-value ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF151UNX, ENCFF495PLA 1238963069 ENCODE Processing Pipeline 9c62314a4086687f52e5b1872b135e1b https://www.encodeproject.org/files/ENCFF134MNJ/@@download/ENCFF134MNJ.bigWig GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF878LTV bigBed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF984NYN 11279721 ENCODE Processing Pipeline e732fadf4b381b83303bd9b92d419713 https://www.encodeproject.org/files/ENCFF878LTV/@@download/ENCFF878LTV.bigBed hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF151JWA bed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF151UNX, ENCFF495PLA 6362684 ENCODE Processing Pipeline 3dba6912abb8409272796714c811bc22 https://www.encodeproject.org/files/ENCFF151JWA/@@download/ENCFF151JWA.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF116ZLL bigWig signal p-value ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF214PDY, ENCFF579HSF 1267134336 ENCODE Processing Pipeline b8d9934a12d32e01f3cbe7d10207f1cb https://www.encodeproject.org/files/ENCFF116ZLL/@@download/ENCFF116ZLL.bigWig hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF096XNZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF984NYN 454977 ENCODE Processing Pipeline e0997fd8ae820e4b4103d0338e2a86a9 https://www.encodeproject.org/files/ENCFF096XNZ/@@download/ENCFF096XNZ.bed.gz hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF991QOA bigWig fold change over control ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF151UNX, ENCFF495PLA 1505011841 ENCODE Processing Pipeline 6dbf4480828d0c69fc861cd8e2a8015b https://www.encodeproject.org/files/ENCFF991QOA/@@download/ENCFF991QOA.bigWig GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF229KSA bigBed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF151JWA 11292154 ENCODE Processing Pipeline 08f405ecf8f624846cb2f263128aa60c https://www.encodeproject.org/files/ENCFF229KSA/@@download/ENCFF229KSA.bigBed GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF804MOS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF151JWA, ENCFF419RSJ 454788 ENCODE Processing Pipeline e6f044ae15e4f0f88ada8a602a26109e https://www.encodeproject.org/files/ENCFF804MOS/@@download/ENCFF804MOS.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF116YFB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF804MOS 821207 ENCODE Processing Pipeline 58ef2a2b1a05b066ae675ca8a9297fdb https://www.encodeproject.org/files/ENCFF116YFB/@@download/ENCFF116YFB.bigBed GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF509WYM bigWig fold change over control ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF214PDY, ENCFF579HSF 1516788383 ENCODE Processing Pipeline e21f51f05219b0b75eaeb215076a5377 https://www.encodeproject.org/files/ENCFF509WYM/@@download/ENCFF509WYM.bigWig hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF984NYN bed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF214PDY, ENCFF579HSF 6358819 ENCODE Processing Pipeline 0c2b795df4e4823dabb906d6b529e05d https://www.encodeproject.org/files/ENCFF984NYN/@@download/ENCFF984NYN.bed.gz hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF552ETP fastq reads ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF523ULM 3326848099 Michael Snyder, Stanford f9088ca92f7b23763959856416b76d40 SRA:SRR6213690 https://www.encodeproject.org/files/ENCFF552ETP/@@download/ENCFF552ETP.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF523ULM fastq reads ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF552ETP 3931481310 Michael Snyder, Stanford 236b200e9c6047b628e5b0a011b66431 SRA:SRR6213690 https://www.encodeproject.org/files/ENCFF523ULM/@@download/ENCFF523ULM.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF489DPL fastq reads ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF999EFL 2844442638 Michael Snyder, Stanford a1b3bd91365380ebfa3c9a39d55dcf11 SRA:SRR6213691 https://www.encodeproject.org/files/ENCFF489DPL/@@download/ENCFF489DPL.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF999EFL fastq reads ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF489DPL 3175212177 Michael Snyder, Stanford 5b804ddbe311e996e28a96735c868f0a SRA:SRR6213691 https://www.encodeproject.org/files/ENCFF999EFL/@@download/ENCFF999EFL.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF039TEF bam unfiltered alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF489DPL, ENCFF807MUK, ENCFF999EFL 5742148165 ENCODE Processing Pipeline 8472fdd109e9532f50436664ebd3d5e5 https://www.encodeproject.org/files/ENCFF039TEF/@@download/ENCFF039TEF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF204LAC bam unfiltered alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF489DPL, ENCFF643CGH, ENCFF999EFL 5748608400 ENCODE Processing Pipeline ea80290943c2f0c95e997e0b45a157a6 https://www.encodeproject.org/files/ENCFF204LAC/@@download/ENCFF204LAC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF666OMD bam unfiltered alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF523ULM, ENCFF552ETP, ENCFF807MUK 6721145257 ENCODE Processing Pipeline 31bc759102872250c44093f20a94da9d https://www.encodeproject.org/files/ENCFF666OMD/@@download/ENCFF666OMD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF505PWS bam unfiltered alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF523ULM, ENCFF552ETP, ENCFF643CGH 6727088161 ENCODE Processing Pipeline 57f13b6f7a8ba7cbe67a483b26fb64eb https://www.encodeproject.org/files/ENCFF505PWS/@@download/ENCFF505PWS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF918JWJ bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF489DPL, ENCFF643CGH, ENCFF999EFL 4736900055 ENCODE Processing Pipeline 200d1ae82bc394deb13451661e4f4d14 https://www.encodeproject.org/files/ENCFF918JWJ/@@download/ENCFF918JWJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF033PRP bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF489DPL, ENCFF807MUK, ENCFF999EFL 4734403641 ENCODE Processing Pipeline 6fd95bebbabf4a1020edcf8cd37a61f0 https://www.encodeproject.org/files/ENCFF033PRP/@@download/ENCFF033PRP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF877LYM bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF523ULM, ENCFF552ETP, ENCFF807MUK 5237793483 ENCODE Processing Pipeline 1898399971e3e1a35d441953721dc9a9 https://www.encodeproject.org/files/ENCFF877LYM/@@download/ENCFF877LYM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF580EBG bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF523ULM, ENCFF552ETP, ENCFF643CGH 5241107195 ENCODE Processing Pipeline 7ce628aeb9d8de5bc33788e40848a2f2 https://www.encodeproject.org/files/ENCFF580EBG/@@download/ENCFF580EBG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF448GAD bigWig signal p-value ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF580EBG, ENCFF712WXB, ENCFF790TAN, ENCFF918JWJ 2489062626 ENCODE Processing Pipeline 64f0dfade05ae1b0632a5c32b505dd9e https://www.encodeproject.org/files/ENCFF448GAD/@@download/ENCFF448GAD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF146BPL bigBed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF361CLP 13270647 ENCODE Processing Pipeline c07a2bbc1bbbaddeb0daae46fd285b18 https://www.encodeproject.org/files/ENCFF146BPL/@@download/ENCFF146BPL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF569CMJ bed narrowPeak optimal idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF361CLP, ENCFF419RSJ, ENCFF593CDN, ENCFF864WDT 260548 ENCODE Processing Pipeline 9e55a5f7b19f75666b38def9aef21a8e https://www.encodeproject.org/files/ENCFF569CMJ/@@download/ENCFF569CMJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF125PRJ bigWig signal p-value ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF790TAN, ENCFF918JWJ 1351546197 ENCODE Processing Pipeline a0bdfa78539d20982e412d626a80cc6d https://www.encodeproject.org/files/ENCFF125PRJ/@@download/ENCFF125PRJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF728KQG bigBed narrowPeak conservative idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF334TMJ 431273 ENCODE Processing Pipeline 5d2499ed82dbfaacc4644f88c9332f6b https://www.encodeproject.org/files/ENCFF728KQG/@@download/ENCFF728KQG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF143LIN bigBed narrowPeak optimal idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF569CMJ 573706 ENCODE Processing Pipeline 2a706e55d9e33cc5b9d27d08d8663149 https://www.encodeproject.org/files/ENCFF143LIN/@@download/ENCFF143LIN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF696MYD bigWig fold change over control ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF790TAN, ENCFF918JWJ 1465704419 ENCODE Processing Pipeline bb11557d718c0e5c5e54e3ac6a100f00 https://www.encodeproject.org/files/ENCFF696MYD/@@download/ENCFF696MYD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF035IBD bigWig fold change over control ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF580EBG, ENCFF712WXB, ENCFF790TAN, ENCFF918JWJ 2567222659 ENCODE Processing Pipeline 5da4316db8deb5716bbe05f7a8f999df https://www.encodeproject.org/files/ENCFF035IBD/@@download/ENCFF035IBD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF239WZL bigBed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF593CDN 11097914 ENCODE Processing Pipeline 2a83e4e1e18f496798eec4bbe46d151d https://www.encodeproject.org/files/ENCFF239WZL/@@download/ENCFF239WZL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF334TMJ bed narrowPeak conservative idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF361CLP, ENCFF419RSJ, ENCFF593CDN, ENCFF864WDT 175805 ENCODE Processing Pipeline bc3939472acde74db4d78fcc9038dce9 https://www.encodeproject.org/files/ENCFF334TMJ/@@download/ENCFF334TMJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF633WKB bigWig signal p-value ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF580EBG, ENCFF712WXB, ENCFF790TAN 1957449792 ENCODE Processing Pipeline b9edf789fc7d1133eef007b77a068015 https://www.encodeproject.org/files/ENCFF633WKB/@@download/ENCFF633WKB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF097RBW bigWig fold change over control ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF580EBG, ENCFF712WXB, ENCFF790TAN 1997916881 ENCODE Processing Pipeline 1ad1eed10a9232b73564dd5150227137 https://www.encodeproject.org/files/ENCFF097RBW/@@download/ENCFF097RBW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593CDN bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF790TAN, ENCFF918JWJ 6718788 ENCODE Processing Pipeline 2e670a4fc1a5d394878d47acdf6eb2bf https://www.encodeproject.org/files/ENCFF593CDN/@@download/ENCFF593CDN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF361CLP bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF580EBG, ENCFF712WXB, ENCFF790TAN 7034903 ENCODE Processing Pipeline f15a4e75910d0f34ddffe35443a1d781 https://www.encodeproject.org/files/ENCFF361CLP/@@download/ENCFF361CLP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF864WDT bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF580EBG, ENCFF712WXB, ENCFF790TAN, ENCFF918JWJ 7258990 ENCODE Processing Pipeline b5ac94e5c1237396436464505a36d550 https://www.encodeproject.org/files/ENCFF864WDT/@@download/ENCFF864WDT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF869ERM bigBed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF864WDT 13078886 ENCODE Processing Pipeline 7b08caf5263089a67389568663c0118b https://www.encodeproject.org/files/ENCFF869ERM/@@download/ENCFF869ERM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF228FIP bigWig signal p-value ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF033PRP, ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 2444058069 ENCODE Processing Pipeline 3489f2da5696d1c97b00877542186185 https://www.encodeproject.org/files/ENCFF228FIP/@@download/ENCFF228FIP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF306CVU bigWig signal p-value ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF033PRP, ENCFF160VXC 1256506740 ENCODE Processing Pipeline 58ac17898c0ce7565777df8750aa2ae0 https://www.encodeproject.org/files/ENCFF306CVU/@@download/ENCFF306CVU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF583ALU bigWig fold change over control ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF033PRP, ENCFF160VXC 1476358104 ENCODE Processing Pipeline 843d33e5493b2f3a33bb10ee30a48c85 https://www.encodeproject.org/files/ENCFF583ALU/@@download/ENCFF583ALU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF418WIA bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 7030043 ENCODE Processing Pipeline 548036a1564917488e5a98e4507384f0 https://www.encodeproject.org/files/ENCFF418WIA/@@download/ENCFF418WIA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF549KOD bed narrowPeak optimal idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF198CPZ, ENCFF418WIA, ENCFF849HOO 250332 ENCODE Processing Pipeline 4c6d59eb2d9fee9bb959881542988713 https://www.encodeproject.org/files/ENCFF549KOD/@@download/ENCFF549KOD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF586PNH bigWig signal p-value ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 1979663194 ENCODE Processing Pipeline 1be00b1802750c13d27ad46a08af623b https://www.encodeproject.org/files/ENCFF586PNH/@@download/ENCFF586PNH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF434EKV bigWig fold change over control ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 1995475028 ENCODE Processing Pipeline 552fd5badaa04e1f4d497acf989458d5 https://www.encodeproject.org/files/ENCFF434EKV/@@download/ENCFF434EKV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF755NBK bigWig fold change over control ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF033PRP, ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 2528440336 ENCODE Processing Pipeline b3ed54de4b6b57b6a88179f55fd26441 https://www.encodeproject.org/files/ENCFF755NBK/@@download/ENCFF755NBK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF584PJC bigBed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF418WIA 13257712 ENCODE Processing Pipeline 301b558c02f3eddbb557a5d2e450002d https://www.encodeproject.org/files/ENCFF584PJC/@@download/ENCFF584PJC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF257CKD bigBed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF198CPZ 11082780 ENCODE Processing Pipeline 4aec1c66ee0a61b177dffbe120b15e7f https://www.encodeproject.org/files/ENCFF257CKD/@@download/ENCFF257CKD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF540MNX bed narrowPeak conservative idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF198CPZ, ENCFF418WIA, ENCFF849HOO 174710 ENCODE Processing Pipeline b253048f9cdabc6874ca98131e3126d5 https://www.encodeproject.org/files/ENCFF540MNX/@@download/ENCFF540MNX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF198CPZ bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF033PRP, ENCFF160VXC 6717709 ENCODE Processing Pipeline f4b1a73f9cff8d1402fcf2f19e0fea73 https://www.encodeproject.org/files/ENCFF198CPZ/@@download/ENCFF198CPZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF222KAL bigBed narrowPeak conservative idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF540MNX 356730 ENCODE Processing Pipeline 74e48e1cec7d2a456fc822b8c1fd1ade https://www.encodeproject.org/files/ENCFF222KAL/@@download/ENCFF222KAL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF849HOO bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF033PRP, ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 7253108 ENCODE Processing Pipeline 3a370546d1a46cbcefbf349fa1d6e9f0 https://www.encodeproject.org/files/ENCFF849HOO/@@download/ENCFF849HOO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF594WYM bigBed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF849HOO 13069673 ENCODE Processing Pipeline 1f1318b14fe7f8c59b02703be92c05a5 https://www.encodeproject.org/files/ENCFF594WYM/@@download/ENCFF594WYM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF127WKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF549KOD 554781 ENCODE Processing Pipeline 9b700f108878e47a6b9fbcd08648d62d https://www.encodeproject.org/files/ENCFF127WKZ/@@download/ENCFF127WKZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF602URB fastq reads ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF618GBB 2526200003 Michael Snyder, Stanford ce0b95c06722ddafd4129ad1f8fb442b SRA:SRR5111616 https://www.encodeproject.org/files/ENCFF602URB/@@download/ENCFF602URB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF802KGS fastq reads ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF306YKT 2098231920 Michael Snyder, Stanford 7579318e36ebd74afda8deb373f1366b SRA:SRR5111617 https://www.encodeproject.org/files/ENCFF802KGS/@@download/ENCFF802KGS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF306YKT fastq reads ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF802KGS 2111539246 Michael Snyder, Stanford 51762829eb4a3f54170177ca34cb5e3f SRA:SRR5111617 https://www.encodeproject.org/files/ENCFF306YKT/@@download/ENCFF306YKT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF618GBB fastq reads ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF602URB 2532324471 Michael Snyder, Stanford bce7b65462a2695aeea77ea3b5df6a09 SRA:SRR5111616 https://www.encodeproject.org/files/ENCFF618GBB/@@download/ENCFF618GBB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF263RDJ bam unfiltered alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF306YKT, ENCFF643CGH, ENCFF802KGS 4685166453 ENCODE Processing Pipeline d969e49f2d757f8623aa899b94289975 https://www.encodeproject.org/files/ENCFF263RDJ/@@download/ENCFF263RDJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF262OOV bam unfiltered alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF306YKT, ENCFF802KGS, ENCFF807MUK 4680542855 ENCODE Processing Pipeline b40bfb333a963cdd0ee010d53dd08a25 https://www.encodeproject.org/files/ENCFF262OOV/@@download/ENCFF262OOV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF101SGN bam unfiltered alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF602URB, ENCFF618GBB, ENCFF807MUK 5602038846 ENCODE Processing Pipeline c025dedc5c095a0ae58423b18910f0fe https://www.encodeproject.org/files/ENCFF101SGN/@@download/ENCFF101SGN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF477ARG bam unfiltered alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF602URB, ENCFF618GBB, ENCFF643CGH 5609768006 ENCODE Processing Pipeline 3a771395454ae667bb13fdef068a31ec https://www.encodeproject.org/files/ENCFF477ARG/@@download/ENCFF477ARG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF398XYY bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF306YKT, ENCFF643CGH, ENCFF802KGS 3949872882 ENCODE Processing Pipeline bbb871c7e55d162b987a54efb8237a55 https://www.encodeproject.org/files/ENCFF398XYY/@@download/ENCFF398XYY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF804JJB bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF602URB, ENCFF618GBB, ENCFF807MUK 4923227133 ENCODE Processing Pipeline fb2f9c5a2a48cb429ca927834417708a https://www.encodeproject.org/files/ENCFF804JJB/@@download/ENCFF804JJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF114YKN bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF306YKT, ENCFF802KGS, ENCFF807MUK 3946393213 ENCODE Processing Pipeline c7e2a0f67eba1d22b32a9d76b3b35c6e https://www.encodeproject.org/files/ENCFF114YKN/@@download/ENCFF114YKN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF586JGY bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF602URB, ENCFF618GBB, ENCFF643CGH 4926837597 ENCODE Processing Pipeline cf94aa8048270356f70097a653541fc1 https://www.encodeproject.org/files/ENCFF586JGY/@@download/ENCFF586JGY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF055PGQ bigWig signal p-value ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF804JJB 1217023271 ENCODE Processing Pipeline 758c0cfc533205f5bc19cdf6c15a0808 https://www.encodeproject.org/files/ENCFF055PGQ/@@download/ENCFF055PGQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF189HPI bigWig signal p-value ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF114YKN 1243614190 ENCODE Processing Pipeline d5c18071340c58d286383c6b57717d0e https://www.encodeproject.org/files/ENCFF189HPI/@@download/ENCFF189HPI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF549TLV bigWig signal p-value ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF114YKN, ENCFF804JJB 1617164150 ENCODE Processing Pipeline 7ca8984c19053bf52ee1225c579f022b https://www.encodeproject.org/files/ENCFF549TLV/@@download/ENCFF549TLV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF337VBV bigWig fold change over control ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF114YKN 1316847385 ENCODE Processing Pipeline e6e2930eb9143c89271e7f594a80ab73 https://www.encodeproject.org/files/ENCFF337VBV/@@download/ENCFF337VBV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF165KZW bigWig fold change over control ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF804JJB 1505307141 ENCODE Processing Pipeline d3ae48973371428701c18562af28bf7d https://www.encodeproject.org/files/ENCFF165KZW/@@download/ENCFF165KZW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF141RRR bigWig fold change over control ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF114YKN, ENCFF804JJB 1955728784 ENCODE Processing Pipeline 7c2863cbee754266b879fd7dbfaeafab https://www.encodeproject.org/files/ENCFF141RRR/@@download/ENCFF141RRR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF658NRV bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF804JJB 6516448 ENCODE Processing Pipeline 2f52f945cba5afdefe9c831542968021 https://www.encodeproject.org/files/ENCFF658NRV/@@download/ENCFF658NRV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF509AXQ bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF114YKN 6309957 ENCODE Processing Pipeline 3f158883c86749a86e7b7fff60b2938e https://www.encodeproject.org/files/ENCFF509AXQ/@@download/ENCFF509AXQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF842XCR bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF114YKN, ENCFF804JJB 7206186 ENCODE Processing Pipeline 8c664f3f0a15e4f287ff11a404ce895a https://www.encodeproject.org/files/ENCFF842XCR/@@download/ENCFF842XCR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF497RPG bigBed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF509AXQ 11401789 ENCODE Processing Pipeline 2aa962ea51d1e0a82587ea914ef9dff3 https://www.encodeproject.org/files/ENCFF497RPG/@@download/ENCFF497RPG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF248REJ bigBed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF658NRV 11302840 ENCODE Processing Pipeline 840adfc89230ac857ef3f16dae8ea3cb https://www.encodeproject.org/files/ENCFF248REJ/@@download/ENCFF248REJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF715LHJ bigBed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF842XCR 11436061 ENCODE Processing Pipeline a0fc030f20a7a04be1346aabf00ff359 https://www.encodeproject.org/files/ENCFF715LHJ/@@download/ENCFF715LHJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF873HOK bed narrowPeak conservative idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF509AXQ, ENCFF658NRV, ENCFF842XCR 95682 ENCODE Processing Pipeline 1245a80263adb234f418df8730c730d8 https://www.encodeproject.org/files/ENCFF873HOK/@@download/ENCFF873HOK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF238QDK bigBed narrowPeak conservative idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF873HOK 211665 ENCODE Processing Pipeline 2c4c379aef062b16a5e1fd009e0a18fb https://www.encodeproject.org/files/ENCFF238QDK/@@download/ENCFF238QDK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF027VBY bed narrowPeak optimal idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF509AXQ, ENCFF658NRV, ENCFF842XCR 144740 ENCODE Processing Pipeline 423ceb39342f97ef4e4d82e988e86d86 https://www.encodeproject.org/files/ENCFF027VBY/@@download/ENCFF027VBY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF527UDU bigBed narrowPeak optimal idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF027VBY 278774 ENCODE Processing Pipeline 870e1dc8fb27a317104bdca428857959 https://www.encodeproject.org/files/ENCFF527UDU/@@download/ENCFF527UDU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF214LBS bigWig signal p-value ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF586JGY 1503828790 ENCODE Processing Pipeline 1e40083dc74056f8cf1f8d2087a8995b https://www.encodeproject.org/files/ENCFF214LBS/@@download/ENCFF214LBS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF283VNK bigWig signal p-value ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF398XYY 1370017353 ENCODE Processing Pipeline e5e561266c0fa8d6928e1ee9b2d20263 https://www.encodeproject.org/files/ENCFF283VNK/@@download/ENCFF283VNK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF705JVR bigWig signal p-value ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF398XYY, ENCFF586JGY 1947249091 ENCODE Processing Pipeline 36235bc5a1a9639e8fb7a2cf287118c9 https://www.encodeproject.org/files/ENCFF705JVR/@@download/ENCFF705JVR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF673WMF bigWig fold change over control ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF398XYY 1287627024 ENCODE Processing Pipeline 0369abac391b1bdf8899f51f5f296538 https://www.encodeproject.org/files/ENCFF673WMF/@@download/ENCFF673WMF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF849OBG bigWig fold change over control ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF586JGY 1473030037 ENCODE Processing Pipeline 39f9d45e20431332fd6fd85fa539034f https://www.encodeproject.org/files/ENCFF849OBG/@@download/ENCFF849OBG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF289QWH bigWig fold change over control ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF398XYY, ENCFF586JGY 1985706813 ENCODE Processing Pipeline 950fba903e50dc7a12a04127ecb08b41 https://www.encodeproject.org/files/ENCFF289QWH/@@download/ENCFF289QWH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF482IME bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF586JGY 6371105 ENCODE Processing Pipeline ddb85b29f1aaf06792bc35cbb4092114 https://www.encodeproject.org/files/ENCFF482IME/@@download/ENCFF482IME.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF076KEG bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF398XYY 6161825 ENCODE Processing Pipeline 2d08c93e84becfb3e8135bc69ffef586 https://www.encodeproject.org/files/ENCFF076KEG/@@download/ENCFF076KEG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF943KZU bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF398XYY, ENCFF586JGY 7123614 ENCODE Processing Pipeline 2eadf9c799b06424882fbfef187cd02c https://www.encodeproject.org/files/ENCFF943KZU/@@download/ENCFF943KZU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF929NEU bigBed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF076KEG 11403807 ENCODE Processing Pipeline 137e44f8b6b060e05c0bf95b9b9ac364 https://www.encodeproject.org/files/ENCFF929NEU/@@download/ENCFF929NEU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF584HQZ bigBed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF482IME 11308666 ENCODE Processing Pipeline ea7ed23302bc409c3392c940c1b03d3a https://www.encodeproject.org/files/ENCFF584HQZ/@@download/ENCFF584HQZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF231DXB bigBed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF943KZU 11461095 ENCODE Processing Pipeline 6aef87394326a966ddffd68785b6be27 https://www.encodeproject.org/files/ENCFF231DXB/@@download/ENCFF231DXB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF237YVA bed narrowPeak conservative idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF076KEG, ENCFF419RSJ, ENCFF482IME, ENCFF943KZU 95679 ENCODE Processing Pipeline 893937d59afd6321f7ea46c8709d5baa https://www.encodeproject.org/files/ENCFF237YVA/@@download/ENCFF237YVA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF349EPA bigBed narrowPeak optimal idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF359FVQ 279104 ENCODE Processing Pipeline 1af406778f606a3e3e809814be82e0d5 https://www.encodeproject.org/files/ENCFF349EPA/@@download/ENCFF349EPA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF802HZS bigBed narrowPeak conservative idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF237YVA 213645 ENCODE Processing Pipeline 086209f6cf26da4eb587f8551168d4f6 https://www.encodeproject.org/files/ENCFF802HZS/@@download/ENCFF802HZS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF359FVQ bed narrowPeak optimal idr thresholded peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF076KEG, ENCFF419RSJ, ENCFF482IME, ENCFF943KZU 143473 ENCODE Processing Pipeline 8055810e9bd5aef1b95f4215d5f219a6 https://www.encodeproject.org/files/ENCFF359FVQ/@@download/ENCFF359FVQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF838ZUT fastq reads ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 76 paired-ended 1 ENCFF257CEN 1659723314 Bradley Bernstein, Broad 82996eb4a86ce4da3334c74560929d8b https://www.encodeproject.org/files/ENCFF838ZUT/@@download/ENCFF838ZUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF452ROQ/, /files/ENCFF527WMD/, /files/ENCFF584YEG/ released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF224PDC fastq reads ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 paired-ended 1 ENCFF042JKC 2664687772 Bradley Bernstein, Broad 930866c2f79ecfdc87dcb8eba02f5390 https://www.encodeproject.org/files/ENCFF224PDC/@@download/ENCFF224PDC.fastq.gz Illumina HiSeq 2000 /files/ENCFF163PYU/, /files/ENCFF522PVI/, /files/ENCFF639RMG/, /files/ENCFF716YLE/ released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF042JKC fastq reads ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 paired-ended 2 ENCFF224PDC 2617334306 Bradley Bernstein, Broad daa0ddb73acc8d32022ca3c6888b416e https://www.encodeproject.org/files/ENCFF042JKC/@@download/ENCFF042JKC.fastq.gz Illumina HiSeq 2000 /files/ENCFF272GOE/, /files/ENCFF486LTO/, /files/ENCFF665BBC/, /files/ENCFF830CTU/ released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF257CEN fastq reads ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 76 paired-ended 2 ENCFF838ZUT 1679129891 Bradley Bernstein, Broad 54828488ced14ba3c3439c8dfa0913fb https://www.encodeproject.org/files/ENCFF257CEN/@@download/ENCFF257CEN.fastq.gz Illumina HiSeq 2000 /files/ENCFF274YMK/, /files/ENCFF335TOI/, /files/ENCFF375CUH/, /files/ENCFF802LTL/, /files/ENCFF863XGE/ released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF121TUF bam unfiltered alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 76 ENCFF257CEN, ENCFF807MUK, ENCFF838ZUT 3996374348 ENCODE Processing Pipeline 2ae85583f315c7d4fd6ab3c3d198cd2d https://www.encodeproject.org/files/ENCFF121TUF/@@download/ENCFF121TUF.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF311ONZ bam unfiltered alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 76 ENCFF257CEN, ENCFF643CGH, ENCFF838ZUT 4007197706 ENCODE Processing Pipeline 952957e0f789b050e8f787186fef3807 https://www.encodeproject.org/files/ENCFF311ONZ/@@download/ENCFF311ONZ.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF284DMR bam unfiltered alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF042JKC, ENCFF224PDC, ENCFF643CGH 6297883797 ENCODE Processing Pipeline 18ae03aee7b7722a24c8337210b7f475 https://www.encodeproject.org/files/ENCFF284DMR/@@download/ENCFF284DMR.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF514DJN bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 76 ENCFF257CEN, ENCFF643CGH, ENCFF838ZUT 3269197693 ENCODE Processing Pipeline 9fce517a3218fccf371afef46e891339 https://www.encodeproject.org/files/ENCFF514DJN/@@download/ENCFF514DJN.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF373PZM bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF042JKC, ENCFF224PDC, ENCFF807MUK 5113817530 ENCODE Processing Pipeline ba5c3283eed44c51c58f636f56f03c6a https://www.encodeproject.org/files/ENCFF373PZM/@@download/ENCFF373PZM.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF166PZT bam unfiltered alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF042JKC, ENCFF224PDC, ENCFF807MUK 6276910621 ENCODE Processing Pipeline d95ad3a0d8a6ff104a230789c1ad02f4 https://www.encodeproject.org/files/ENCFF166PZT/@@download/ENCFF166PZT.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF216LIY bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 76 ENCFF257CEN, ENCFF807MUK, ENCFF838ZUT 3266749350 ENCODE Processing Pipeline c98b3013c6c0f615b3fc98165e1128b3 https://www.encodeproject.org/files/ENCFF216LIY/@@download/ENCFF216LIY.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF330LZA bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF042JKC, ENCFF224PDC, ENCFF643CGH 5116439793 ENCODE Processing Pipeline 87489a79d1591fc6c1e0a3719a3e5d37 https://www.encodeproject.org/files/ENCFF330LZA/@@download/ENCFF330LZA.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF678NGS bigWig signal p-value ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF196EDW, ENCFF356MAB, ENCFF514DJN 2211272119 ENCODE Processing Pipeline e3f026c0e9e01bff5bf772721c7bf3e7 https://www.encodeproject.org/files/ENCFF678NGS/@@download/ENCFF678NGS.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF638ZSR bigBed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF550FIG 13138709 ENCODE Processing Pipeline 9f8358e42743c1140dc72871ef08e22d https://www.encodeproject.org/files/ENCFF638ZSR/@@download/ENCFF638ZSR.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF702HXQ bigWig signal p-value ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF196EDW, ENCFF330LZA, ENCFF356MAB, ENCFF514DJN 2593982769 ENCODE Processing Pipeline 7ef9a5eb430fda37b6e7188f4671ff10 https://www.encodeproject.org/files/ENCFF702HXQ/@@download/ENCFF702HXQ.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF069MRN bigWig fold change over control ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF196EDW, ENCFF356MAB, ENCFF514DJN 2045325614 ENCODE Processing Pipeline c7fff7a3fc2812e7707d859ef8956777 https://www.encodeproject.org/files/ENCFF069MRN/@@download/ENCFF069MRN.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF550FIG bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF196EDW, ENCFF330LZA, ENCFF356MAB 7093490 ENCODE Processing Pipeline 4a0faafe96352af0727b2c0a555e2eb2 https://www.encodeproject.org/files/ENCFF550FIG/@@download/ENCFF550FIG.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF897ZPY bigBed narrowPeak conservative idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF629FBV 229765 ENCODE Processing Pipeline dd503c954114b4400fd560a6ebf829d6 https://www.encodeproject.org/files/ENCFF897ZPY/@@download/ENCFF897ZPY.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF462PJH bed narrowPeak optimal idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF303NKB, ENCFF419RSJ, ENCFF547DXP, ENCFF550FIG 87407 ENCODE Processing Pipeline e60ec85e7f2f148aaa13d10642e4ae3d https://www.encodeproject.org/files/ENCFF462PJH/@@download/ENCFF462PJH.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF303NKB bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF196EDW, ENCFF356MAB, ENCFF514DJN 7113872 ENCODE Processing Pipeline 917a4545c1be287395db72f08e5f7d09 https://www.encodeproject.org/files/ENCFF303NKB/@@download/ENCFF303NKB.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF804EFO bigBed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF303NKB 12588219 ENCODE Processing Pipeline 50ee5fefdc984633fd262d28fd7e00b8 https://www.encodeproject.org/files/ENCFF804EFO/@@download/ENCFF804EFO.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF429ZMO bigWig fold change over control ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF196EDW, ENCFF330LZA, ENCFF356MAB, ENCFF514DJN 2879855020 ENCODE Processing Pipeline 179b16028fd3cab0d19c793d0da32f07 https://www.encodeproject.org/files/ENCFF429ZMO/@@download/ENCFF429ZMO.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF894EGO bigWig signal p-value ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF196EDW, ENCFF330LZA, ENCFF356MAB 2267285304 ENCODE Processing Pipeline 7710c62f3bcf8120b8833ef79ba21d3c https://www.encodeproject.org/files/ENCFF894EGO/@@download/ENCFF894EGO.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF515MIE bigWig fold change over control ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF196EDW, ENCFF330LZA, ENCFF356MAB 2504493718 ENCODE Processing Pipeline 4ce77e8b2bc5055a736d9cc962292ff4 https://www.encodeproject.org/files/ENCFF515MIE/@@download/ENCFF515MIE.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF547DXP bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF196EDW, ENCFF330LZA, ENCFF356MAB, ENCFF514DJN 7180631 ENCODE Processing Pipeline 147688cfdc54f8e115c316526b6587fb https://www.encodeproject.org/files/ENCFF547DXP/@@download/ENCFF547DXP.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF028RHO bigBed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF547DXP 12641874 ENCODE Processing Pipeline 5e2cac462e95fb9014a130f4908faa57 https://www.encodeproject.org/files/ENCFF028RHO/@@download/ENCFF028RHO.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF543JQU bigBed narrowPeak optimal idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF462PJH 235926 ENCODE Processing Pipeline 345f5a226a234514f131eae89edeab7f https://www.encodeproject.org/files/ENCFF543JQU/@@download/ENCFF543JQU.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF629FBV bed narrowPeak conservative idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF303NKB, ENCFF419RSJ, ENCFF547DXP, ENCFF550FIG 65219 ENCODE Processing Pipeline 8d620e4ddabb3d09283437adb2aca128 https://www.encodeproject.org/files/ENCFF629FBV/@@download/ENCFF629FBV.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF114HTT bigWig signal p-value ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF216LIY, ENCFF567WDW, ENCFF618RNL 2152951843 ENCODE Processing Pipeline e7648c87e0109ffbfd280a62933653af https://www.encodeproject.org/files/ENCFF114HTT/@@download/ENCFF114HTT.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF933YBL bigWig fold change over control ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 2501819969 ENCODE Processing Pipeline 194c802b0ed1403a1e1b4973e70c92b8 https://www.encodeproject.org/files/ENCFF933YBL/@@download/ENCFF933YBL.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF626CXG bigWig signal p-value ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 2263792217 ENCODE Processing Pipeline 056cdf0e3d9cf3173c8cf7406c63d475 https://www.encodeproject.org/files/ENCFF626CXG/@@download/ENCFF626CXG.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF459SVB bigBed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF614KPG 12410186 ENCODE Processing Pipeline 4a61150b1a177646231c508aa52372ad https://www.encodeproject.org/files/ENCFF459SVB/@@download/ENCFF459SVB.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF034TNE bigWig signal p-value ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF216LIY, ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 2784006239 ENCODE Processing Pipeline d84e9c79d146b785b72971d3792182a3 https://www.encodeproject.org/files/ENCFF034TNE/@@download/ENCFF034TNE.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF278KAW bigWig fold change over control ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF216LIY, ENCFF567WDW, ENCFF618RNL 2047169254 ENCODE Processing Pipeline ed47b4140b051d72e2ac23d096d506dc https://www.encodeproject.org/files/ENCFF278KAW/@@download/ENCFF278KAW.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF387LXU bigWig fold change over control ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF216LIY, ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 4031179935 ENCODE Processing Pipeline 62693add3185f5f53d04500813a3e090 https://www.encodeproject.org/files/ENCFF387LXU/@@download/ENCFF387LXU.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF555PRT bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 7067021 ENCODE Processing Pipeline 8373c7a4e4a68b272bfbd3451ddfe271 https://www.encodeproject.org/files/ENCFF555PRT/@@download/ENCFF555PRT.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF614KPG bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF216LIY, ENCFF567WDW, ENCFF618RNL 6958291 ENCODE Processing Pipeline fc1095e01fe1d903c820780cba8e5e30 https://www.encodeproject.org/files/ENCFF614KPG/@@download/ENCFF614KPG.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF432ZMO bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF216LIY, ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 7174132 ENCODE Processing Pipeline e5a8628e668c63299d55f39deda0213b https://www.encodeproject.org/files/ENCFF432ZMO/@@download/ENCFF432ZMO.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF499RIV bigBed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF555PRT 13103464 ENCODE Processing Pipeline f22a96f1196a29d015ea2d3badac8ecc https://www.encodeproject.org/files/ENCFF499RIV/@@download/ENCFF499RIV.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF842TNC bigBed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF432ZMO 12624515 ENCODE Processing Pipeline 2fab84d141dc501f08caf01a976fc16b https://www.encodeproject.org/files/ENCFF842TNC/@@download/ENCFF842TNC.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF766IDA bed narrowPeak conservative idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF432ZMO, ENCFF555PRT, ENCFF614KPG 66302 ENCODE Processing Pipeline 766e0b83b99c8b034f8fd60e1d09f69b https://www.encodeproject.org/files/ENCFF766IDA/@@download/ENCFF766IDA.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF223DVE bigBed narrowPeak conservative idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF766IDA 230242 ENCODE Processing Pipeline a45a38e13e8857d1ae51ed09f15caff4 https://www.encodeproject.org/files/ENCFF223DVE/@@download/ENCFF223DVE.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF068DLY bed narrowPeak optimal idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF432ZMO, ENCFF555PRT, ENCFF614KPG 89185 ENCODE Processing Pipeline 9a66417c7c7a963da54869ff4eff870e https://www.encodeproject.org/files/ENCFF068DLY/@@download/ENCFF068DLY.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF663JUV bigBed narrowPeak optimal idr thresholded peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF068DLY 237307 ENCODE Processing Pipeline 5f4d836aa634f2521964d03adec62d53 https://www.encodeproject.org/files/ENCFF663JUV/@@download/ENCFF663JUV.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF004DQS fastq reads ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 1 100 paired-ended 2 ENCFF806CEC 1821796750 Michael Snyder, Stanford 939d01f8199535c3a10291b06fc7c5a8 https://www.encodeproject.org/files/ENCFF004DQS/@@download/ENCFF004DQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF806CEC fastq reads ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 1 100 paired-ended 1 ENCFF004DQS 1776327663 Michael Snyder, Stanford 37910df82ac8e29d628af70a30b6accd https://www.encodeproject.org/files/ENCFF806CEC/@@download/ENCFF806CEC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF023BWP fastq reads ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 2 ENCFF041PSD 2079235164 Michael Snyder, Stanford d482445349828da951ce58c9e9b520af https://www.encodeproject.org/files/ENCFF023BWP/@@download/ENCFF023BWP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF041PSD fastq reads ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 1 ENCFF023BWP 2078019124 Michael Snyder, Stanford 244e6b1bb7ff2e94f0880eab129a4122 https://www.encodeproject.org/files/ENCFF041PSD/@@download/ENCFF041PSD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF077QLY bam unfiltered alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023BWP, ENCFF041PSD, ENCFF807MUK 4496438502 ENCODE Processing Pipeline add4a20271f2b302063da385dd609ff2 https://www.encodeproject.org/files/ENCFF077QLY/@@download/ENCFF077QLY.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF558XCY bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023BWP, ENCFF041PSD, ENCFF807MUK 3489702951 ENCODE Processing Pipeline 21a92b027233fdb287e9b718886ea073 https://www.encodeproject.org/files/ENCFF558XCY/@@download/ENCFF558XCY.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF454DSR bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 100 ENCFF004DQS, ENCFF643CGH, ENCFF806CEC 3278375464 ENCODE Processing Pipeline 63e32e928bfa31e604f941305866fa8b https://www.encodeproject.org/files/ENCFF454DSR/@@download/ENCFF454DSR.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF373SGI bam unfiltered alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 100 ENCFF004DQS, ENCFF806CEC, ENCFF807MUK 3955822542 ENCODE Processing Pipeline b37f6fedb43901c52a599506df2a1fb3 https://www.encodeproject.org/files/ENCFF373SGI/@@download/ENCFF373SGI.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF733QFW bam unfiltered alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023BWP, ENCFF041PSD, ENCFF643CGH 4499953611 ENCODE Processing Pipeline 32df496160486a0d4c268687f0669c78 https://www.encodeproject.org/files/ENCFF733QFW/@@download/ENCFF733QFW.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF509BKM bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023BWP, ENCFF041PSD, ENCFF643CGH 3491161037 ENCODE Processing Pipeline 14e70596573f1082e3c84c56515a6eaa https://www.encodeproject.org/files/ENCFF509BKM/@@download/ENCFF509BKM.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF433HWM bam unfiltered alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 100 ENCFF004DQS, ENCFF643CGH, ENCFF806CEC 3959605396 ENCODE Processing Pipeline 3a16e03b8a87fa61060c43c46eaaeecf https://www.encodeproject.org/files/ENCFF433HWM/@@download/ENCFF433HWM.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF675CIQ bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 100 ENCFF004DQS, ENCFF806CEC, ENCFF807MUK 3276801956 ENCODE Processing Pipeline 3bb76470b8fdf4455df912c28186a389 https://www.encodeproject.org/files/ENCFF675CIQ/@@download/ENCFF675CIQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF754RTF bigWig signal p-value ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF558XCY, ENCFF581ZJL, ENCFF675CIQ 1815599717 ENCODE Processing Pipeline 503f778be7bd9c0cbb307eb3e2c732ea https://www.encodeproject.org/files/ENCFF754RTF/@@download/ENCFF754RTF.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF493PTN bigWig fold change over control ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF675CIQ 1025191184 ENCODE Processing Pipeline a5a41a6a2ddbb680f1e95de053793321 https://www.encodeproject.org/files/ENCFF493PTN/@@download/ENCFF493PTN.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF643KYQ bigWig fold change over control ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF558XCY, ENCFF581ZJL, ENCFF675CIQ 1945401848 ENCODE Processing Pipeline 6605828288fdc4edb7faf54f808fee59 https://www.encodeproject.org/files/ENCFF643KYQ/@@download/ENCFF643KYQ.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF333QJD bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF558XCY, ENCFF581ZJL 6318915 ENCODE Processing Pipeline eec9c719204fd3e601f578290d7056c6 https://www.encodeproject.org/files/ENCFF333QJD/@@download/ENCFF333QJD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF024XWR bigWig fold change over control ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF227IZS, ENCFF454DSR 1005568195 ENCODE Processing Pipeline 6c32c7323a7e4ecacf5ffc9da6461ece https://www.encodeproject.org/files/ENCFF024XWR/@@download/ENCFF024XWR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF805OZG bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF227IZS, ENCFF454DSR 6142300 ENCODE Processing Pipeline 816f429eabfa8e63676ccc1c202f8b4c https://www.encodeproject.org/files/ENCFF805OZG/@@download/ENCFF805OZG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF578ZFO bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF227IZS, ENCFF454DSR, ENCFF509BKM, ENCFF910IKB 7070458 ENCODE Processing Pipeline c4836d9bcaa0bf5a86dda9c5de9c70db https://www.encodeproject.org/files/ENCFF578ZFO/@@download/ENCFF578ZFO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF159ZAQ bigBed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF305MLA 13340543 ENCODE Processing Pipeline 0c5fc6c285a1350d76a9e97e2d9216da https://www.encodeproject.org/files/ENCFF159ZAQ/@@download/ENCFF159ZAQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF968TKP bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF558XCY, ENCFF581ZJL, ENCFF675CIQ 7071021 ENCODE Processing Pipeline 5437699270e023892b30040df7b557f5 https://www.encodeproject.org/files/ENCFF968TKP/@@download/ENCFF968TKP.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF944GZI bed narrowPeak optimal idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF001TDO, ENCFF286UPH, ENCFF333QJD, ENCFF968TKP 115274 ENCODE Processing Pipeline 047a545f5de7e170d1e06e9dfe3ee10a https://www.encodeproject.org/files/ENCFF944GZI/@@download/ENCFF944GZI.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF305MLA bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF509BKM, ENCFF910IKB 6354629 ENCODE Processing Pipeline 6145dcbc4bd9ecd927d556f976472974 https://www.encodeproject.org/files/ENCFF305MLA/@@download/ENCFF305MLA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF206XFK bigBed narrowPeak conservative idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF108FQP 175316 ENCODE Processing Pipeline 4862f2246b73b0ebcec383bfe04e7e26 https://www.encodeproject.org/files/ENCFF206XFK/@@download/ENCFF206XFK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF913AQF bed narrowPeak optimal idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF305MLA, ENCFF419RSJ, ENCFF578ZFO, ENCFF805OZG 113819 ENCODE Processing Pipeline 203a5e4e8b1b7299f993e8cccaa7642a https://www.encodeproject.org/files/ENCFF913AQF/@@download/ENCFF913AQF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF657YVH bigWig fold change over control ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF558XCY, ENCFF581ZJL 1036108575 ENCODE Processing Pipeline fe42bdcaf5db236bcf2c8a15f201faca https://www.encodeproject.org/files/ENCFF657YVH/@@download/ENCFF657YVH.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF165MLQ bigBed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF333QJD 13332770 ENCODE Processing Pipeline e66d2cedb385e174c5ced9e663e795a3 https://www.encodeproject.org/files/ENCFF165MLQ/@@download/ENCFF165MLQ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF987UTZ bigBed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF968TKP 13226217 ENCODE Processing Pipeline 81d1dd1f3f773022ba4ecad849eb0341 https://www.encodeproject.org/files/ENCFF987UTZ/@@download/ENCFF987UTZ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF261FOK bigBed narrowPeak optimal idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF944GZI 258930 ENCODE Processing Pipeline 8be0ec480ea106c8b6a4c3f706d95cf3 https://www.encodeproject.org/files/ENCFF261FOK/@@download/ENCFF261FOK.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF806CWA bigWig fold change over control ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF227IZS, ENCFF454DSR, ENCFF509BKM, ENCFF910IKB 1961337356 ENCODE Processing Pipeline 09f888d6fb730923ebe5f6bfb56276de https://www.encodeproject.org/files/ENCFF806CWA/@@download/ENCFF806CWA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF108FQP bed narrowPeak conservative idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF305MLA, ENCFF419RSJ, ENCFF578ZFO, ENCFF805OZG 59990 ENCODE Processing Pipeline a3062a6b34e3388116835b46f8180400 https://www.encodeproject.org/files/ENCFF108FQP/@@download/ENCFF108FQP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF329LHY bigWig signal p-value ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF558XCY, ENCFF581ZJL 1012860070 ENCODE Processing Pipeline 5831197926b2436ba38d6290fdcd5ea7 https://www.encodeproject.org/files/ENCFF329LHY/@@download/ENCFF329LHY.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF929OXS bigBed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF286UPH 11193359 ENCODE Processing Pipeline 5f210ce1669e574cf3421277a39fc2f2 https://www.encodeproject.org/files/ENCFF929OXS/@@download/ENCFF929OXS.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF215GCR bigBed narrowPeak conservative idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF934MUQ 174978 ENCODE Processing Pipeline 25a20abb85ad4dcfee2d6660d60c6626 https://www.encodeproject.org/files/ENCFF215GCR/@@download/ENCFF215GCR.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF409IWG bigWig signal p-value ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF509BKM, ENCFF910IKB 997683239 ENCODE Processing Pipeline a28ce83b69228c268ec60504ba405ccd https://www.encodeproject.org/files/ENCFF409IWG/@@download/ENCFF409IWG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF508DQV bigBed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF805OZG 11211842 ENCODE Processing Pipeline 286f0540df45605ae5d4a955ef021a86 https://www.encodeproject.org/files/ENCFF508DQV/@@download/ENCFF508DQV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF894ZKR bigWig signal p-value ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF675CIQ 893135239 ENCODE Processing Pipeline ffa9918477781d524a07b1760cb4b58f https://www.encodeproject.org/files/ENCFF894ZKR/@@download/ENCFF894ZKR.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF934MUQ bed narrowPeak conservative idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF001TDO, ENCFF286UPH, ENCFF333QJD, ENCFF968TKP 60829 ENCODE Processing Pipeline 70b9946b9de7321adc3c3f64b70661a5 https://www.encodeproject.org/files/ENCFF934MUQ/@@download/ENCFF934MUQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF964GMU bigWig signal p-value ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF227IZS, ENCFF454DSR 938047016 ENCODE Processing Pipeline e1e194a76e53ab0324d36c8fdede53cd https://www.encodeproject.org/files/ENCFF964GMU/@@download/ENCFF964GMU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF623LLQ bigWig signal p-value ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF227IZS, ENCFF454DSR, ENCFF509BKM, ENCFF910IKB 1869999063 ENCODE Processing Pipeline 43145cb8ee6b1e9208f70f5983cce5b5 https://www.encodeproject.org/files/ENCFF623LLQ/@@download/ENCFF623LLQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF286UPH bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF675CIQ 6143999 ENCODE Processing Pipeline 527dc753875f936b889ff1aad39f7d1c https://www.encodeproject.org/files/ENCFF286UPH/@@download/ENCFF286UPH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF066XNW bigWig fold change over control ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 ENCFF509BKM, ENCFF910IKB 1031123915 ENCODE Processing Pipeline aeb5ef21617569cdcae47e64b9df4c66 https://www.encodeproject.org/files/ENCFF066XNW/@@download/ENCFF066XNW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF386HJD bigBed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF578ZFO 13234425 ENCODE Processing Pipeline 4ebc3ada0cb5718f93d979e6d12872e6 https://www.encodeproject.org/files/ENCFF386HJD/@@download/ENCFF386HJD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF101WNH bigBed narrowPeak optimal idr thresholded peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3, 4 ENCFF913AQF 258335 ENCODE Processing Pipeline 050de88934700c57ace4c32f3df05f17 https://www.encodeproject.org/files/ENCFF101WNH/@@download/ENCFF101WNH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF686DFA fastq reads ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 2 ENCFF571BGG 4040275983 Michael Snyder, Stanford eced547133d4ee50e94e62256a7da2dd https://www.encodeproject.org/files/ENCFF686DFA/@@download/ENCFF686DFA.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF571BGG fastq reads ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 1 ENCFF686DFA 3816185744 Michael Snyder, Stanford 9f2b8bb9884185b7a71da5ce9ddef8fd https://www.encodeproject.org/files/ENCFF571BGG/@@download/ENCFF571BGG.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF789QLW bam unfiltered alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 100 ENCFF571BGG, ENCFF643CGH, ENCFF686DFA 7526610576 ENCODE Processing Pipeline f410d7d246003651056922e28f3dd226 https://www.encodeproject.org/files/ENCFF789QLW/@@download/ENCFF789QLW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF337AHE bam unfiltered alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 100 ENCFF571BGG, ENCFF686DFA, ENCFF807MUK 7521215511 ENCODE Processing Pipeline 5e9fdc2bbd52f759eb3c630945f765f4 https://www.encodeproject.org/files/ENCFF337AHE/@@download/ENCFF337AHE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF850ONE bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 100 ENCFF571BGG, ENCFF643CGH, ENCFF686DFA 5250982084 ENCODE Processing Pipeline 69b5794076f64a05c93fa1a1b331dd17 https://www.encodeproject.org/files/ENCFF850ONE/@@download/ENCFF850ONE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF502AYE bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 100 ENCFF571BGG, ENCFF686DFA, ENCFF807MUK 5245554267 ENCODE Processing Pipeline 2bed5da5cc6adf7de9c51958dcd5b44d https://www.encodeproject.org/files/ENCFF502AYE/@@download/ENCFF502AYE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF807ATT fastq reads ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF938LON 2748057202 Michael Snyder, Stanford 318ff789aef1a1366c734f895243c9d6 https://www.encodeproject.org/files/ENCFF807ATT/@@download/ENCFF807ATT.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF938LON fastq reads ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF807ATT 2250039435 Michael Snyder, Stanford f629e5dcc5faa478267d44cdd1bfec39 https://www.encodeproject.org/files/ENCFF938LON/@@download/ENCFF938LON.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF072CHR bam unfiltered alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 101 ENCFF807ATT, ENCFF807MUK, ENCFF938LON 4906448568 ENCODE Processing Pipeline c05dc54a9c1c61070fd01aec78127f38 https://www.encodeproject.org/files/ENCFF072CHR/@@download/ENCFF072CHR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF497YCG bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 101 ENCFF807ATT, ENCFF807MUK, ENCFF938LON 3932055552 ENCODE Processing Pipeline f0c5abe3f8aaec232c8d57f5e68f39a0 https://www.encodeproject.org/files/ENCFF497YCG/@@download/ENCFF497YCG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF938QJK bam unfiltered alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 101 ENCFF643CGH, ENCFF807ATT, ENCFF938LON 4912750305 ENCODE Processing Pipeline 5f36b292bb12c2ffcf298b1835a25ac7 https://www.encodeproject.org/files/ENCFF938QJK/@@download/ENCFF938QJK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF791VBW bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 101 ENCFF643CGH, ENCFF807ATT, ENCFF938LON 3934270232 ENCODE Processing Pipeline 658835f1b09047ac15aa75dfa3b29955 https://www.encodeproject.org/files/ENCFF791VBW/@@download/ENCFF791VBW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF147WWK bigWig fold change over control ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF712WXB, ENCFF790TAN, ENCFF791VBW, ENCFF850ONE 2430760084 ENCODE Processing Pipeline 24d5f2d6fbcbc8c1c0a821acce39e605 https://www.encodeproject.org/files/ENCFF147WWK/@@download/ENCFF147WWK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF991ETB bigBed narrowPeak optimal idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF470RHZ 99869 ENCODE Processing Pipeline c5d447c6403184abdb6abc5def3047e1 https://www.encodeproject.org/files/ENCFF991ETB/@@download/ENCFF991ETB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF469UGS bigWig signal p-value ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF712WXB, ENCFF790TAN, ENCFF791VBW, ENCFF850ONE 1987561419 ENCODE Processing Pipeline bf415acab797a512d054632108abf714 https://www.encodeproject.org/files/ENCFF469UGS/@@download/ENCFF469UGS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF525WAD bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF712WXB, ENCFF790TAN, ENCFF850ONE 6958513 ENCODE Processing Pipeline 4c1a5da1e77ded3f029229be8e7a6835 https://www.encodeproject.org/files/ENCFF525WAD/@@download/ENCFF525WAD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF080RJE bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF712WXB, ENCFF790TAN, ENCFF791VBW, ENCFF850ONE 7199895 ENCODE Processing Pipeline 9e107096aeef915513d9935de90ae03e https://www.encodeproject.org/files/ENCFF080RJE/@@download/ENCFF080RJE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF431XEG bigBed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF525WAD 11003995 ENCODE Processing Pipeline 44b3c5270ee516d426256ac1858b2415 https://www.encodeproject.org/files/ENCFF431XEG/@@download/ENCFF431XEG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF267DTG bed narrowPeak conservative idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF080RJE, ENCFF414XMW, ENCFF419RSJ, ENCFF525WAD 3408 ENCODE Processing Pipeline b08609adfac73dc859efc8543f2f8c53 https://www.encodeproject.org/files/ENCFF267DTG/@@download/ENCFF267DTG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF190BEV bigWig fold change over control ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF712WXB, ENCFF790TAN, ENCFF850ONE 2028612596 ENCODE Processing Pipeline 75b55d8c2b6d4d551e6dd512a0a3c497 https://www.encodeproject.org/files/ENCFF190BEV/@@download/ENCFF190BEV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF969TLN bigWig fold change over control ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF790TAN, ENCFF791VBW 1307158668 ENCODE Processing Pipeline ce960c085d9b589032b1ba5b9c216e60 https://www.encodeproject.org/files/ENCFF969TLN/@@download/ENCFF969TLN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF414XMW bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF790TAN, ENCFF791VBW 6377733 ENCODE Processing Pipeline d61d2c5dda397f8843144070e28950e9 https://www.encodeproject.org/files/ENCFF414XMW/@@download/ENCFF414XMW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF755SAJ bigBed narrowPeak conservative idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF267DTG 85991 ENCODE Processing Pipeline 695bae5134744d01ecac67b44f095dc1 https://www.encodeproject.org/files/ENCFF755SAJ/@@download/ENCFF755SAJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF470RHZ bed narrowPeak optimal idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF080RJE, ENCFF414XMW, ENCFF419RSJ, ENCFF525WAD 20437 ENCODE Processing Pipeline 51a09c0515ea8af92993d48e3d444f96 https://www.encodeproject.org/files/ENCFF470RHZ/@@download/ENCFF470RHZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF057VLD bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF160VXC, ENCFF502AYE, ENCFF834TUP 6954033 ENCODE Processing Pipeline ede7f808e6c666a30bbc245591fb017f https://www.encodeproject.org/files/ENCFF057VLD/@@download/ENCFF057VLD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF412TZL bigWig signal p-value ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF712WXB, ENCFF790TAN, ENCFF850ONE 1809195651 ENCODE Processing Pipeline 535039443e436d1da3fa4a821357b2c3 https://www.encodeproject.org/files/ENCFF412TZL/@@download/ENCFF412TZL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF920JYO bigWig signal p-value ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF160VXC, ENCFF502AYE, ENCFF834TUP 1785988629 ENCODE Processing Pipeline d4af2bb368916230bb36826dd0ea4dfe https://www.encodeproject.org/files/ENCFF920JYO/@@download/ENCFF920JYO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF009ERI bigWig signal p-value ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF160VXC, ENCFF497YCG, ENCFF502AYE, ENCFF834TUP 1804860481 ENCODE Processing Pipeline 809732021b6683073a97243ddb950f9c https://www.encodeproject.org/files/ENCFF009ERI/@@download/ENCFF009ERI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF480PRG bigWig fold change over control ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF160VXC, ENCFF497YCG, ENCFF502AYE, ENCFF834TUP 2430797149 ENCODE Processing Pipeline e4b4da5f6fd509dc3aa30916ab29211c https://www.encodeproject.org/files/ENCFF480PRG/@@download/ENCFF480PRG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF598CYU bigWig signal p-value ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF790TAN, ENCFF791VBW 1028133965 ENCODE Processing Pipeline f9c449a00a2cdff9020d2f2447274ca0 https://www.encodeproject.org/files/ENCFF598CYU/@@download/ENCFF598CYU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF675VRK bigBed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF414XMW 10925719 ENCODE Processing Pipeline 625fde1d272c18c5a2c55b6c59e6f7b7 https://www.encodeproject.org/files/ENCFF675VRK/@@download/ENCFF675VRK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF229ATE bigBed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF080RJE 10854648 ENCODE Processing Pipeline 36e49d8041a9012620400654c7bb58c3 https://www.encodeproject.org/files/ENCFF229ATE/@@download/ENCFF229ATE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF089TKM bigWig signal p-value ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF160VXC, ENCFF497YCG 1073440341 ENCODE Processing Pipeline f48a7344fecf626efa0f31d83ff483ea https://www.encodeproject.org/files/ENCFF089TKM/@@download/ENCFF089TKM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF053DXA bed narrowPeak conservative idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF057VLD, ENCFF242KBX, ENCFF529YAS 3344 ENCODE Processing Pipeline 374418e772dffa7cbf977bf353f524a5 https://www.encodeproject.org/files/ENCFF053DXA/@@download/ENCFF053DXA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF571VFC bigWig fold change over control ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF160VXC, ENCFF502AYE, ENCFF834TUP 2037411259 ENCODE Processing Pipeline ac15b98437dee693d52a7d352df6e50e https://www.encodeproject.org/files/ENCFF571VFC/@@download/ENCFF571VFC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF825NIW bigWig fold change over control ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF160VXC, ENCFF497YCG 1307208167 ENCODE Processing Pipeline 1857fd74b8d4d3c09321579d568f4d92 https://www.encodeproject.org/files/ENCFF825NIW/@@download/ENCFF825NIW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF529YAS bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF160VXC, ENCFF497YCG, ENCFF502AYE, ENCFF834TUP 7196022 ENCODE Processing Pipeline 45a9078258541a3eece74e8c63912fda https://www.encodeproject.org/files/ENCFF529YAS/@@download/ENCFF529YAS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF728COO bigBed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF529YAS 10844021 ENCODE Processing Pipeline c80b1af72a5206dba52c7792020049ff https://www.encodeproject.org/files/ENCFF728COO/@@download/ENCFF728COO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF727VTM bigBed narrowPeak conservative idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF053DXA 84432 ENCODE Processing Pipeline bf3e0e9c868b5c7d1ca924996c995125 https://www.encodeproject.org/files/ENCFF727VTM/@@download/ENCFF727VTM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF956GLN bigBed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF057VLD 10991847 ENCODE Processing Pipeline a80e0ba3549f3c741c596e73aa25b110 https://www.encodeproject.org/files/ENCFF956GLN/@@download/ENCFF956GLN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF242KBX bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF160VXC, ENCFF497YCG 6376227 ENCODE Processing Pipeline fedd267cb3d639ea64d80d7e452d586c https://www.encodeproject.org/files/ENCFF242KBX/@@download/ENCFF242KBX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF477FYN bed narrowPeak optimal idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF057VLD, ENCFF242KBX, ENCFF529YAS 21910 ENCODE Processing Pipeline f56261dc7ae02440cb56935e0f8dfe87 https://www.encodeproject.org/files/ENCFF477FYN/@@download/ENCFF477FYN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF347WED bigBed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 ENCFF242KBX 10913248 ENCODE Processing Pipeline e2b722e71df0715921c272dc1a8c0bd7 https://www.encodeproject.org/files/ENCFF347WED/@@download/ENCFF347WED.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF247LCU bigBed narrowPeak optimal idr thresholded peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF477FYN 100850 ENCODE Processing Pipeline f568f03cf41a2f5171ac78602a5b3a55 https://www.encodeproject.org/files/ENCFF247LCU/@@download/ENCFF247LCU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF420HGF bam unfiltered alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF070OBA, ENCFF807MUK, ENCFF932JXG 4440172472 ENCODE Processing Pipeline e2d94163f0bff23fc9fffc1574c29da4 https://www.encodeproject.org/files/ENCFF420HGF/@@download/ENCFF420HGF.bam hg19 released low read depth, antibody characterized with exemption ENCFF521KVL bam unfiltered alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF132GWN, ENCFF456MJL, ENCFF807MUK 4245534120 ENCODE Processing Pipeline 4c101f5dd0aa22ad58e98eeb031ee155 https://www.encodeproject.org/files/ENCFF521KVL/@@download/ENCFF521KVL.bam hg19 released low read depth, antibody characterized with exemption ENCFF456MJL fastq reads ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF132GWN 1951606118 Michael Snyder, Stanford 818e216c969a6e36049a0ce766c4cfee SRA:SRR5111683 https://www.encodeproject.org/files/ENCFF456MJL/@@download/ENCFF456MJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth, antibody characterized with exemption ENCFF070OBA fastq reads ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF932JXG 2018681182 Michael Snyder, Stanford ef87a3b3e0b4a1238050dd887a08b0fd SRA:SRR5111682 https://www.encodeproject.org/files/ENCFF070OBA/@@download/ENCFF070OBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth, antibody characterized with exemption ENCFF932JXG fastq reads ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF070OBA 1986905309 Michael Snyder, Stanford d63f7f294d4177db63999a043beefba7 SRA:SRR5111682 https://www.encodeproject.org/files/ENCFF932JXG/@@download/ENCFF932JXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth, antibody characterized with exemption ENCFF132GWN fastq reads ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF456MJL 1918173349 Michael Snyder, Stanford 904cfe4d436ecbaa6a5e0bf5697e453f SRA:SRR5111683 https://www.encodeproject.org/files/ENCFF132GWN/@@download/ENCFF132GWN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth, antibody characterized with exemption ENCFF791XQO bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF070OBA, ENCFF807MUK, ENCFF932JXG 3661782619 ENCODE Processing Pipeline 5bf642119f8cfc455453e9b17e874782 https://www.encodeproject.org/files/ENCFF791XQO/@@download/ENCFF791XQO.bam hg19 released low read depth, antibody characterized with exemption ENCFF357FKU bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF132GWN, ENCFF456MJL, ENCFF807MUK 3358306386 ENCODE Processing Pipeline 42af36af156e1540cfb597156e1a2f47 https://www.encodeproject.org/files/ENCFF357FKU/@@download/ENCFF357FKU.bam hg19 released low read depth, antibody characterized with exemption ENCFF128GGQ bigWig signal p-value ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF357FKU, ENCFF581ZJL 1065105045 ENCODE Processing Pipeline 22651c2e8aa2ac9691e137cc2cd3ddea https://www.encodeproject.org/files/ENCFF128GGQ/@@download/ENCFF128GGQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF423BRV bigWig signal p-value ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF791XQO 1120309392 ENCODE Processing Pipeline 7f0430ddeea9f976f777ef7cbebc6ae2 https://www.encodeproject.org/files/ENCFF423BRV/@@download/ENCFF423BRV.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF377ENC bigWig signal p-value ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF357FKU, ENCFF581ZJL, ENCFF791XQO 1924299218 ENCODE Processing Pipeline 9d97e202ea209ae691aeb830b5179f02 https://www.encodeproject.org/files/ENCFF377ENC/@@download/ENCFF377ENC.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF406UKY bigWig fold change over control ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF357FKU, ENCFF581ZJL 1099444917 ENCODE Processing Pipeline 204c7ae693c890c1d740132a52225281 https://www.encodeproject.org/files/ENCFF406UKY/@@download/ENCFF406UKY.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF413QJH bigWig fold change over control ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF791XQO 1086047011 ENCODE Processing Pipeline 50fda4e6679e516e2f0cea4e77c0b000 https://www.encodeproject.org/files/ENCFF413QJH/@@download/ENCFF413QJH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF725PEY bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF357FKU, ENCFF581ZJL, ENCFF791XQO 7262863 ENCODE Processing Pipeline 54ba1f98062c391f062ccdd5e1d221a1 https://www.encodeproject.org/files/ENCFF725PEY/@@download/ENCFF725PEY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF813JVU bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF791XQO 6793802 ENCODE Processing Pipeline f2494b346b270c93b3bc1584d8375fab https://www.encodeproject.org/files/ENCFF813JVU/@@download/ENCFF813JVU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF963YVX bigWig fold change over control ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF357FKU, ENCFF581ZJL, ENCFF791XQO 1984827323 ENCODE Processing Pipeline 9beb405bb7a35839e50de3d8ef6e465a https://www.encodeproject.org/files/ENCFF963YVX/@@download/ENCFF963YVX.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF582BFZ bigBed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF813JVU 13290444 ENCODE Processing Pipeline 7858bc164e05ca0f26fe5fb91d568590 https://www.encodeproject.org/files/ENCFF582BFZ/@@download/ENCFF582BFZ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF205MSU bigBed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF725PEY 13130333 ENCODE Processing Pipeline 58c62f61361fe90ae45f21921d9a8649 https://www.encodeproject.org/files/ENCFF205MSU/@@download/ENCFF205MSU.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF883ZAE bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF357FKU, ENCFF581ZJL 6932385 ENCODE Processing Pipeline 973b8e66a7e34eae1cbfafbd7b88fd0a https://www.encodeproject.org/files/ENCFF883ZAE/@@download/ENCFF883ZAE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF195JRH bigBed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF883ZAE 13211467 ENCODE Processing Pipeline 26538fd520f27f44d3086354f6314410 https://www.encodeproject.org/files/ENCFF195JRH/@@download/ENCFF195JRH.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF713WWL bam unfiltered alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF132GWN, ENCFF456MJL, ENCFF643CGH 4248206380 ENCODE Processing Pipeline 58e60d313778382f1c33cf11c5b72a62 https://www.encodeproject.org/files/ENCFF713WWL/@@download/ENCFF713WWL.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF561PIE bam unfiltered alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF070OBA, ENCFF643CGH, ENCFF932JXG 4443547613 ENCODE Processing Pipeline 6d1d7ac8c1d451d504ba5dae97d78964 https://www.encodeproject.org/files/ENCFF561PIE/@@download/ENCFF561PIE.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF477CYZ bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF070OBA, ENCFF643CGH, ENCFF932JXG 3664233820 ENCODE Processing Pipeline 78463c0bc26579f7ed15a6e2c37c1885 https://www.encodeproject.org/files/ENCFF477CYZ/@@download/ENCFF477CYZ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF784MTZ bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF132GWN, ENCFF456MJL, ENCFF643CGH 3360905951 ENCODE Processing Pipeline 3b637168a899e31881e1e34073926a8b https://www.encodeproject.org/files/ENCFF784MTZ/@@download/ENCFF784MTZ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF717NBT bigWig signal p-value ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF784MTZ, ENCFF910IKB 1090845610 ENCODE Processing Pipeline 1c5def2c6e28f3f7e637bd9c30176e31 https://www.encodeproject.org/files/ENCFF717NBT/@@download/ENCFF717NBT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF869GYL bigWig signal p-value ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF477CYZ 935002825 ENCODE Processing Pipeline 1465de265ab84cbbb5316d2b95fd767b https://www.encodeproject.org/files/ENCFF869GYL/@@download/ENCFF869GYL.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF655YRZ bigWig signal p-value ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF477CYZ, ENCFF784MTZ, ENCFF910IKB 1583703791 ENCODE Processing Pipeline c7e6266d741ecf40075ffd9a0c13d12b https://www.encodeproject.org/files/ENCFF655YRZ/@@download/ENCFF655YRZ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF718EYL bigWig fold change over control ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF784MTZ, ENCFF910IKB 1099672671 ENCODE Processing Pipeline 81c3a9d99fd038946459e577bfdae697 https://www.encodeproject.org/files/ENCFF718EYL/@@download/ENCFF718EYL.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF343LFE bigWig fold change over control ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF477CYZ 1111169502 ENCODE Processing Pipeline df8b9f40172c0328398c0c9ad21d2ca1 https://www.encodeproject.org/files/ENCFF343LFE/@@download/ENCFF343LFE.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF036DKA bigWig fold change over control ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF477CYZ, ENCFF784MTZ, ENCFF910IKB 1981881911 ENCODE Processing Pipeline 4c0f6d3c2e386de4aae0a80ab13d84cb https://www.encodeproject.org/files/ENCFF036DKA/@@download/ENCFF036DKA.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF925NTW bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF784MTZ, ENCFF910IKB 6823064 ENCODE Processing Pipeline 89be9e45d1bbc045ef667766bc21a48e https://www.encodeproject.org/files/ENCFF925NTW/@@download/ENCFF925NTW.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF009QBO bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF477CYZ 6680199 ENCODE Processing Pipeline 388f40761313b2cfc884ce6ceb5cfcb4 https://www.encodeproject.org/files/ENCFF009QBO/@@download/ENCFF009QBO.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF334KUA bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF477CYZ, ENCFF784MTZ, ENCFF910IKB 7205587 ENCODE Processing Pipeline f439a70db82dc7eb70f8b4a1a5af42fb https://www.encodeproject.org/files/ENCFF334KUA/@@download/ENCFF334KUA.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF493AAS bigBed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF925NTW 13205922 ENCODE Processing Pipeline 24f7ffea7ab7e837ded40843942c9f93 https://www.encodeproject.org/files/ENCFF493AAS/@@download/ENCFF493AAS.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF091FSB bigBed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF009QBO 13287828 ENCODE Processing Pipeline 0b653b25f64c65aedb35f0dfa315469e https://www.encodeproject.org/files/ENCFF091FSB/@@download/ENCFF091FSB.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF660YGI bigBed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF334KUA 13091112 ENCODE Processing Pipeline 57e0cbc3d0f95e56e202f970aa1b02c8 https://www.encodeproject.org/files/ENCFF660YGI/@@download/ENCFF660YGI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF667LOH bed narrowPeak conservative idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF009QBO, ENCFF334KUA, ENCFF419RSJ, ENCFF925NTW 239726 ENCODE Processing Pipeline a8854b3a59c290552fedc6d254ca85fb https://www.encodeproject.org/files/ENCFF667LOH/@@download/ENCFF667LOH.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF445NDR bigBed narrowPeak conservative idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF667LOH 572952 ENCODE Processing Pipeline a83d36c2c24e58256921475de36eaee3 https://www.encodeproject.org/files/ENCFF445NDR/@@download/ENCFF445NDR.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF617ZLL bed narrowPeak optimal idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF009QBO, ENCFF334KUA, ENCFF419RSJ, ENCFF925NTW 307664 ENCODE Processing Pipeline 7acca57727469981d879609a9141e3af https://www.encodeproject.org/files/ENCFF617ZLL/@@download/ENCFF617ZLL.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF050KWC bigBed narrowPeak optimal idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF617ZLL 685934 ENCODE Processing Pipeline c97d0fd866349f989af9adfda48a0f88 https://www.encodeproject.org/files/ENCFF050KWC/@@download/ENCFF050KWC.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF067ZUO bed narrowPeak conservative idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF725PEY, ENCFF813JVU, ENCFF883ZAE 210435 ENCODE Processing Pipeline a9fea1f3a6f7a66e764e52804a09f322 https://www.encodeproject.org/files/ENCFF067ZUO/@@download/ENCFF067ZUO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF621HYF bigBed narrowPeak conservative idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF067ZUO 421820 ENCODE Processing Pipeline a2cee6d8696d42388ff45fe777a2cbd5 https://www.encodeproject.org/files/ENCFF621HYF/@@download/ENCFF621HYF.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF392MUM bed narrowPeak optimal idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF725PEY, ENCFF813JVU, ENCFF883ZAE 271048 ENCODE Processing Pipeline feec5c83ee0073bfeead5b1f269e553f https://www.encodeproject.org/files/ENCFF392MUM/@@download/ENCFF392MUM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF455XRK bigBed narrowPeak optimal idr thresholded peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF392MUM 498794 ENCODE Processing Pipeline 5400613a8e68a437cbdbfa99f03bee47 https://www.encodeproject.org/files/ENCFF455XRK/@@download/ENCFF455XRK.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF188WFI bam unfiltered alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 100 ENCFF678SZB, ENCFF807MUK, ENCFF864KXI 5494381775 ENCODE Processing Pipeline 4464ee3ca2c5484dc564066ec9df951c https://www.encodeproject.org/files/ENCFF188WFI/@@download/ENCFF188WFI.bam hg19 released borderline replicate concordance, low read depth ENCFF736CXI bam unfiltered alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 100 ENCFF253FCU, ENCFF379LAP, ENCFF807MUK 4559901523 ENCODE Processing Pipeline 2139e76752e415e82372c62f56794c24 https://www.encodeproject.org/files/ENCFF736CXI/@@download/ENCFF736CXI.bam hg19 released borderline replicate concordance, low read depth ENCFF253FCU fastq reads ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 1 100 paired-ended 2 ENCFF379LAP 2095711892 Michael Snyder, Stanford 76947108507c94a1aaf5d47effba1b15 SRA:SRR5112396 https://www.encodeproject.org/files/ENCFF253FCU/@@download/ENCFF253FCU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance, low read depth ENCFF678SZB fastq reads ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 1 100 paired-ended 2 ENCFF864KXI 2586700843 Michael Snyder, Stanford da898d166b96e7842dd199753a91e67f SRA:SRR5112397 https://www.encodeproject.org/files/ENCFF678SZB/@@download/ENCFF678SZB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance, low read depth ENCFF864KXI fastq reads ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 1 100 paired-ended 1 ENCFF678SZB 2511605857 Michael Snyder, Stanford af6866740d80c0d7bdccab6d98986982 SRA:SRR5112397 https://www.encodeproject.org/files/ENCFF864KXI/@@download/ENCFF864KXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance, low read depth ENCFF379LAP fastq reads ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 1 100 paired-ended 1 ENCFF253FCU 2064200638 Michael Snyder, Stanford dafabca98d061944e6acd7e57cae7e24 SRA:SRR5112396 https://www.encodeproject.org/files/ENCFF379LAP/@@download/ENCFF379LAP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance, low read depth ENCFF554KBV bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 100 ENCFF678SZB, ENCFF807MUK, ENCFF864KXI 4204910819 ENCODE Processing Pipeline 7adfcc4afd59c694a1038382bc1598bf https://www.encodeproject.org/files/ENCFF554KBV/@@download/ENCFF554KBV.bam hg19 released borderline replicate concordance, low read depth ENCFF324TIY bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 100 ENCFF253FCU, ENCFF379LAP, ENCFF807MUK 3639622578 ENCODE Processing Pipeline e8654f2fe2fd3c47b94f4ecbe8eb1f86 https://www.encodeproject.org/files/ENCFF324TIY/@@download/ENCFF324TIY.bam hg19 released borderline replicate concordance, low read depth ENCFF408RVR bigWig signal p-value ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF051LWI, ENCFF324TIY 963499281 ENCODE Processing Pipeline 4333cb8bbfaf87941473938305994570 https://www.encodeproject.org/files/ENCFF408RVR/@@download/ENCFF408RVR.bigWig hg19 released borderline replicate concordance, low read depth ENCFF974VIC bigWig signal p-value ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF554KBV, ENCFF581ZJL 1044245176 ENCODE Processing Pipeline f20e3c39a6b63107079a9a3d0e60e1aa https://www.encodeproject.org/files/ENCFF974VIC/@@download/ENCFF974VIC.bigWig hg19 released borderline replicate concordance, low read depth ENCFF813RCK bigWig fold change over control ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF554KBV, ENCFF581ZJL 1144440881 ENCODE Processing Pipeline b6b852aca839b882f4d165e680874bbd https://www.encodeproject.org/files/ENCFF813RCK/@@download/ENCFF813RCK.bigWig hg19 released borderline replicate concordance, low read depth ENCFF759SUU bigWig fold change over control ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF051LWI, ENCFF324TIY 1032612383 ENCODE Processing Pipeline 4ad22b6dc5b3398a1d0d832f205c9cda https://www.encodeproject.org/files/ENCFF759SUU/@@download/ENCFF759SUU.bigWig hg19 released borderline replicate concordance, low read depth ENCFF157NIA bigWig signal p-value ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF324TIY, ENCFF554KBV, ENCFF581ZJL 1845666379 ENCODE Processing Pipeline 45191c04a6f1d235565fce1eb38964b2 https://www.encodeproject.org/files/ENCFF157NIA/@@download/ENCFF157NIA.bigWig hg19 released borderline replicate concordance, low read depth ENCFF972MUU bigWig fold change over control ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF324TIY, ENCFF554KBV, ENCFF581ZJL 2009232325 ENCODE Processing Pipeline d0bd5dd6c6c1d64611ee98d1bde0500c https://www.encodeproject.org/files/ENCFF972MUU/@@download/ENCFF972MUU.bigWig hg19 released borderline replicate concordance, low read depth ENCFF067DNS bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF324TIY, ENCFF554KBV, ENCFF581ZJL 7211675 ENCODE Processing Pipeline c9ae1d1b3ddb3b60ec351321987dc636 https://www.encodeproject.org/files/ENCFF067DNS/@@download/ENCFF067DNS.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF370RXL bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF051LWI, ENCFF324TIY 6491769 ENCODE Processing Pipeline e4a41a2fa968685a3a194a553f6db1dd https://www.encodeproject.org/files/ENCFF370RXL/@@download/ENCFF370RXL.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF904CJM bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF554KBV, ENCFF581ZJL 6838004 ENCODE Processing Pipeline 8c3b46431cc070beac03de662698d275 https://www.encodeproject.org/files/ENCFF904CJM/@@download/ENCFF904CJM.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF796AFL bigBed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF904CJM 13170346 ENCODE Processing Pipeline 6928a511ec0d3e5a636bbdf089c31095 https://www.encodeproject.org/files/ENCFF796AFL/@@download/ENCFF796AFL.bigBed hg19 released borderline replicate concordance, low read depth ENCFF914CVJ bigBed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF067DNS 13117712 ENCODE Processing Pipeline edc65fc7b6394484232b72614ae16296 https://www.encodeproject.org/files/ENCFF914CVJ/@@download/ENCFF914CVJ.bigBed hg19 released borderline replicate concordance, low read depth ENCFF392SGW bigBed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF370RXL 11010136 ENCODE Processing Pipeline 87b367d659da0f32e6128975873cabe1 https://www.encodeproject.org/files/ENCFF392SGW/@@download/ENCFF392SGW.bigBed hg19 released borderline replicate concordance, low read depth ENCFF602CFZ bed narrowPeak optimal idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF001TDO, ENCFF067DNS, ENCFF370RXL, ENCFF904CJM 97867 ENCODE Processing Pipeline 514af67301c0f065646dccd0e7160e69 https://www.encodeproject.org/files/ENCFF602CFZ/@@download/ENCFF602CFZ.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF571OOG bed narrowPeak conservative idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF001TDO, ENCFF067DNS, ENCFF370RXL, ENCFF904CJM 63769 ENCODE Processing Pipeline db5ce328093ae8f9009b94c80fb6abe4 https://www.encodeproject.org/files/ENCFF571OOG/@@download/ENCFF571OOG.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF962ZZE bigBed narrowPeak optimal idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF602CFZ 245896 ENCODE Processing Pipeline 9627d46fcca74eb33eb327bc41315fcd https://www.encodeproject.org/files/ENCFF962ZZE/@@download/ENCFF962ZZE.bigBed hg19 released borderline replicate concordance, low read depth ENCFF035LIO bigBed narrowPeak conservative idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF571OOG 192012 ENCODE Processing Pipeline ce3e28bf2b67b8f47681bbba0532d4ad https://www.encodeproject.org/files/ENCFF035LIO/@@download/ENCFF035LIO.bigBed hg19 released borderline replicate concordance, low read depth ENCFF333SEC bam unfiltered alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 100 ENCFF253FCU, ENCFF379LAP, ENCFF643CGH 4562991175 ENCODE Processing Pipeline 2ac9fe77899ddbb1a79f2b25a9571a50 https://www.encodeproject.org/files/ENCFF333SEC/@@download/ENCFF333SEC.bam GRCh38 released borderline replicate concordance, low read depth ENCFF255PTJ bam unfiltered alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 100 ENCFF643CGH, ENCFF678SZB, ENCFF864KXI 5495463536 ENCODE Processing Pipeline 036e0d051eee178e45d5c51162a9a17f https://www.encodeproject.org/files/ENCFF255PTJ/@@download/ENCFF255PTJ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF362TFV bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 100 ENCFF253FCU, ENCFF379LAP, ENCFF643CGH 3642804582 ENCODE Processing Pipeline db86e35076fb07802245438eff2e4643 https://www.encodeproject.org/files/ENCFF362TFV/@@download/ENCFF362TFV.bam GRCh38 released borderline replicate concordance, low read depth ENCFF007ALP bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 100 ENCFF643CGH, ENCFF678SZB, ENCFF864KXI 4210220051 ENCODE Processing Pipeline f2084e748f4db44f5c48d17d817a1a71 https://www.encodeproject.org/files/ENCFF007ALP/@@download/ENCFF007ALP.bam GRCh38 released borderline replicate concordance, low read depth ENCFF397GLR bigWig signal p-value ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF227IZS, ENCFF362TFV 964822749 ENCODE Processing Pipeline 52ffec5ce52442263bc1e57d9f972d5a https://www.encodeproject.org/files/ENCFF397GLR/@@download/ENCFF397GLR.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF780WPX bigWig signal p-value ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF007ALP, ENCFF910IKB 1214505970 ENCODE Processing Pipeline 0e6ce90ea7fc83af0940acbc52fbdee4 https://www.encodeproject.org/files/ENCFF780WPX/@@download/ENCFF780WPX.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF212JRS bigWig signal p-value ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF007ALP, ENCFF227IZS, ENCFF362TFV, ENCFF910IKB 1856559781 ENCODE Processing Pipeline 1cf4230f9a0b2d06aed25f16ebcec460 https://www.encodeproject.org/files/ENCFF212JRS/@@download/ENCFF212JRS.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF268HLW bigWig fold change over control ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF227IZS, ENCFF362TFV 1032651801 ENCODE Processing Pipeline e6b27fa42bd0c45f186f0001722115ff https://www.encodeproject.org/files/ENCFF268HLW/@@download/ENCFF268HLW.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF302POL bigWig fold change over control ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF007ALP, ENCFF910IKB 1147646403 ENCODE Processing Pipeline 3889fdc50c8b7605c8cc9e6d7ccd3305 https://www.encodeproject.org/files/ENCFF302POL/@@download/ENCFF302POL.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF979RNH bigWig fold change over control ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF007ALP, ENCFF227IZS, ENCFF362TFV, ENCFF910IKB 2010395217 ENCODE Processing Pipeline e012e364060595bb496008ba75b5ef3a https://www.encodeproject.org/files/ENCFF979RNH/@@download/ENCFF979RNH.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF102TJI bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF227IZS, ENCFF362TFV 6338799 ENCODE Processing Pipeline 70b6ceeaf09d0472739ccf59f806ac42 https://www.encodeproject.org/files/ENCFF102TJI/@@download/ENCFF102TJI.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF073ZIR bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF007ALP, ENCFF910IKB 6716028 ENCODE Processing Pipeline b1373c1009188071f6e6569e602e0c25 https://www.encodeproject.org/files/ENCFF073ZIR/@@download/ENCFF073ZIR.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF917IMX bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF007ALP, ENCFF227IZS, ENCFF362TFV, ENCFF910IKB 7192288 ENCODE Processing Pipeline 293af94d92f1e0394a90b63c26ca12cd https://www.encodeproject.org/files/ENCFF917IMX/@@download/ENCFF917IMX.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF962NIK bigBed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF102TJI 11024891 ENCODE Processing Pipeline 157526967a04f8457decb651d30cd465 https://www.encodeproject.org/files/ENCFF962NIK/@@download/ENCFF962NIK.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF249XAI bigBed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF073ZIR 13167162 ENCODE Processing Pipeline f047ca4fa390740035cef21e6c26e818 https://www.encodeproject.org/files/ENCFF249XAI/@@download/ENCFF249XAI.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF127NEI bigBed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF917IMX 13125236 ENCODE Processing Pipeline 3acd4e520c1c69e1a93a02ce9b31e53f https://www.encodeproject.org/files/ENCFF127NEI/@@download/ENCFF127NEI.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF467REJ bed narrowPeak conservative idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF073ZIR, ENCFF102TJI, ENCFF419RSJ, ENCFF917IMX 63208 ENCODE Processing Pipeline 41d8cfeea90298df4b91b6c93a714b66 https://www.encodeproject.org/files/ENCFF467REJ/@@download/ENCFF467REJ.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF065LLO bigBed narrowPeak conservative idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF467REJ 192379 ENCODE Processing Pipeline 14c33d55ffa24744359c5c77d0c18bcc https://www.encodeproject.org/files/ENCFF065LLO/@@download/ENCFF065LLO.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF538GSS bed narrowPeak optimal idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF073ZIR, ENCFF102TJI, ENCFF419RSJ, ENCFF917IMX 101839 ENCODE Processing Pipeline de93a2419e7685898d66b352c86f0e60 https://www.encodeproject.org/files/ENCFF538GSS/@@download/ENCFF538GSS.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF721JIE bigBed narrowPeak optimal idr thresholded peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF538GSS 252657 ENCODE Processing Pipeline 64ac5ef1d79460bb0fe3f4b016eb6553 https://www.encodeproject.org/files/ENCFF721JIE/@@download/ENCFF721JIE.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF744SCS fastq reads ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 693760246 Xiang-Dong Fu, UCSD 20bc41c24f766c320177b03f3890e02f https://www.encodeproject.org/files/ENCFF744SCS/@@download/ENCFF744SCS.fastq.gz Illumina HiSeq 2000 /files/ENCFF017VZP/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF531POO fastq reads ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 851372262 Xiang-Dong Fu, UCSD 8ceb37c9a7ff492053cd1ab3bab993fd https://www.encodeproject.org/files/ENCFF531POO/@@download/ENCFF531POO.fastq.gz Illumina HiSeq 2000 /files/ENCFF298FEZ/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF586ZST fastq reads ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 1645616698 Xiang-Dong Fu, UCSD 9c64176c0f5ebe8af3730d433fc2c8bd https://www.encodeproject.org/files/ENCFF586ZST/@@download/ENCFF586ZST.fastq.gz Illumina HiSeq 2500 /files/ENCFF017VZP/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF992OBB fastq reads ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 1262532559 Xiang-Dong Fu, UCSD be33a1e84986a4b662d9156710796513 https://www.encodeproject.org/files/ENCFF992OBB/@@download/ENCFF992OBB.fastq.gz Illumina HiSeq 2500 /files/ENCFF298FEZ/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF720KWW bam unfiltered alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF531POO, ENCFF643CGH, ENCFF992OBB 1901564503 ENCODE Processing Pipeline ef2da1f3eba4e3ab55fb13f50fbd291e https://www.encodeproject.org/files/ENCFF720KWW/@@download/ENCFF720KWW.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF081QKL bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF531POO, ENCFF643CGH, ENCFF992OBB 506994360 ENCODE Processing Pipeline 7a8e2742e28a278324047481c7c0e65a https://www.encodeproject.org/files/ENCFF081QKL/@@download/ENCFF081QKL.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF887JKP bam unfiltered alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF586ZST, ENCFF643CGH, ENCFF744SCS 2259288953 ENCODE Processing Pipeline 0a15a5edee55fd1e2d7063238f27cad1 https://www.encodeproject.org/files/ENCFF887JKP/@@download/ENCFF887JKP.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF776NZQ bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF586ZST, ENCFF643CGH, ENCFF744SCS 535180642 ENCODE Processing Pipeline e1cee83cc5b5795c55c4fd87e1073f83 https://www.encodeproject.org/files/ENCFF776NZQ/@@download/ENCFF776NZQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF607XLP bam unfiltered alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF586ZST, ENCFF744SCS, ENCFF807MUK 2247924924 ENCODE Processing Pipeline 8d82be92fff9740ea4adddc801cb4080 https://www.encodeproject.org/files/ENCFF607XLP/@@download/ENCFF607XLP.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF144XUD bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF531POO, ENCFF807MUK, ENCFF992OBB 507768465 ENCODE Processing Pipeline 10b9e3ae964a69fb56dbbc0d449ff659 https://www.encodeproject.org/files/ENCFF144XUD/@@download/ENCFF144XUD.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF265FQX bam unfiltered alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF531POO, ENCFF807MUK, ENCFF992OBB 1889182747 ENCODE Processing Pipeline 0e5cc46927235ab28e6910294d83a6e2 https://www.encodeproject.org/files/ENCFF265FQX/@@download/ENCFF265FQX.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF885UDL bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF586ZST, ENCFF744SCS, ENCFF807MUK 535973885 ENCODE Processing Pipeline b2829b31ca67c4d3a7de59e828319ce6 https://www.encodeproject.org/files/ENCFF885UDL/@@download/ENCFF885UDL.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF153IOE bigWig fold change over control ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF773DJG, ENCFF776NZQ 362265413 ENCODE Processing Pipeline 8e023895e3d6fc1d2eefda520a55d5c1 https://www.encodeproject.org/files/ENCFF153IOE/@@download/ENCFF153IOE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF341IRG bigWig signal p-value ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF081QKL, ENCFF695XBC 530941551 ENCODE Processing Pipeline e799671b2eb3b549b60088b15d01b773 https://www.encodeproject.org/files/ENCFF341IRG/@@download/ENCFF341IRG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF509CZV bigBed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF024DUK 12881057 ENCODE Processing Pipeline d840fc47469e6b47c9444a316598eb32 https://www.encodeproject.org/files/ENCFF509CZV/@@download/ENCFF509CZV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF630MSZ bed narrowPeak conservative idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF024DUK, ENCFF419RSJ, ENCFF497EQS, ENCFF685RJG 53225 ENCODE Processing Pipeline 19aa4a5a21e6e86abd19fc3a762657ff https://www.encodeproject.org/files/ENCFF630MSZ/@@download/ENCFF630MSZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF345LZT bigBed narrowPeak conservative idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF630MSZ 157781 ENCODE Processing Pipeline 6bbc916e42d4b99d53a119354a74ed4c https://www.encodeproject.org/files/ENCFF345LZT/@@download/ENCFF345LZT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF477CSW bigWig signal p-value ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF773DJG, ENCFF776NZQ 524223739 ENCODE Processing Pipeline d66c904728ac1fad860ddb67ddd8bbc9 https://www.encodeproject.org/files/ENCFF477CSW/@@download/ENCFF477CSW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF935TCV bigWig signal p-value ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF081QKL, ENCFF695XBC, ENCFF773DJG, ENCFF776NZQ 1019581254 ENCODE Processing Pipeline 04e756cbd56ab0f6faea6d211405801d https://www.encodeproject.org/files/ENCFF935TCV/@@download/ENCFF935TCV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF856MEV bigWig fold change over control ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF081QKL, ENCFF695XBC 330629243 ENCODE Processing Pipeline 6bff7c4b1f03a9ca72337ea4035ac67d https://www.encodeproject.org/files/ENCFF856MEV/@@download/ENCFF856MEV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF133PYQ bigWig fold change over control ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF081QKL, ENCFF695XBC, ENCFF773DJG, ENCFF776NZQ 842418674 ENCODE Processing Pipeline 78887952475e36ae3d639241528aa0d0 https://www.encodeproject.org/files/ENCFF133PYQ/@@download/ENCFF133PYQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF685RJG bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF081QKL, ENCFF695XBC, ENCFF773DJG, ENCFF776NZQ 6621546 ENCODE Processing Pipeline f9ee8c40efb666975724495a58e7250b https://www.encodeproject.org/files/ENCFF685RJG/@@download/ENCFF685RJG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF611CVN bigBed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF497EQS 13027015 ENCODE Processing Pipeline 4a88c548bcbb0d35b3f9e43c39ed5895 https://www.encodeproject.org/files/ENCFF611CVN/@@download/ENCFF611CVN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF592NWC bigBed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF685RJG 13130748 ENCODE Processing Pipeline d8c774088a1c96ee3faf46485f1214c1 https://www.encodeproject.org/files/ENCFF592NWC/@@download/ENCFF592NWC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF024DUK bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF773DJG, ENCFF776NZQ 5082117 ENCODE Processing Pipeline b4175262b6f08d440bad1e825ae030b5 https://www.encodeproject.org/files/ENCFF024DUK/@@download/ENCFF024DUK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF497EQS bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF081QKL, ENCFF695XBC 5125477 ENCODE Processing Pipeline 70b4e72ebb4758ece19936b7eb133c85 https://www.encodeproject.org/files/ENCFF497EQS/@@download/ENCFF497EQS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF875ZPV bed narrowPeak optimal idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF024DUK, ENCFF419RSJ, ENCFF497EQS, ENCFF685RJG 86759 ENCODE Processing Pipeline 7be1bea5334084348a1338651b05c4da https://www.encodeproject.org/files/ENCFF875ZPV/@@download/ENCFF875ZPV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF472NST bigBed narrowPeak optimal idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF875ZPV 211570 ENCODE Processing Pipeline 14b2c1223fda20e82c7f8eccca412069 https://www.encodeproject.org/files/ENCFF472NST/@@download/ENCFF472NST.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF129THB bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF405FNP, ENCFF885UDL 5187681 ENCODE Processing Pipeline b8f4f474a47792308b79d70e1ab5da24 https://www.encodeproject.org/files/ENCFF129THB/@@download/ENCFF129THB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF673SKG bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF144XUD, ENCFF405FNP, ENCFF732BTE, ENCFF885UDL 6555500 ENCODE Processing Pipeline 056921b1d5e4d8983c59bed13769b1df https://www.encodeproject.org/files/ENCFF673SKG/@@download/ENCFF673SKG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF372MYD bigBed narrowPeak conservative idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF623DYE 158494 ENCODE Processing Pipeline b9de89691e5a0414a19202d1207aeea3 https://www.encodeproject.org/files/ENCFF372MYD/@@download/ENCFF372MYD.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF605CXY bigWig signal p-value ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF405FNP, ENCFF885UDL 522196469 ENCODE Processing Pipeline 15e874e525efd1ab1204499b8087b008 https://www.encodeproject.org/files/ENCFF605CXY/@@download/ENCFF605CXY.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF908HDA bed narrowPeak optimal idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF129THB, ENCFF673SKG, ENCFF694HVC 84207 ENCODE Processing Pipeline ad083b3ab1da3ce892225a3f716fd069 https://www.encodeproject.org/files/ENCFF908HDA/@@download/ENCFF908HDA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF265KYA bigWig fold change over control ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF405FNP, ENCFF885UDL 352169133 ENCODE Processing Pipeline b8ac2e67a5faf91f83781e40e7a4f9b5 https://www.encodeproject.org/files/ENCFF265KYA/@@download/ENCFF265KYA.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF271EVQ bigBed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF694HVC 13107327 ENCODE Processing Pipeline 11dddcd4e326474ce5a218ea108ec50f https://www.encodeproject.org/files/ENCFF271EVQ/@@download/ENCFF271EVQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF623DYE bed narrowPeak conservative idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF129THB, ENCFF673SKG, ENCFF694HVC 54513 ENCODE Processing Pipeline c0a9fe2945c06c0335bcda09147b6fe4 https://www.encodeproject.org/files/ENCFF623DYE/@@download/ENCFF623DYE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF123FYD bigWig fold change over control ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF144XUD, ENCFF405FNP, ENCFF732BTE, ENCFF885UDL 843807731 ENCODE Processing Pipeline 9aa576873f75648e5bbb1798351b311e https://www.encodeproject.org/files/ENCFF123FYD/@@download/ENCFF123FYD.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF694HVC bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF144XUD, ENCFF732BTE 5299854 ENCODE Processing Pipeline 1886c4828e140c19ec8738e571cf0ed1 https://www.encodeproject.org/files/ENCFF694HVC/@@download/ENCFF694HVC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF230VSL bigBed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF129THB 12925140 ENCODE Processing Pipeline 169182326575ccdebae01c03b3e59c69 https://www.encodeproject.org/files/ENCFF230VSL/@@download/ENCFF230VSL.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF842EBN bigWig signal p-value ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF144XUD, ENCFF732BTE 623731885 ENCODE Processing Pipeline 223dae837cd74a600b547f73272a6866 https://www.encodeproject.org/files/ENCFF842EBN/@@download/ENCFF842EBN.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF482MDB bigWig signal p-value ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF144XUD, ENCFF405FNP, ENCFF732BTE, ENCFF885UDL 1020947545 ENCODE Processing Pipeline 75a28f5174a648f255a3b5f847828e15 https://www.encodeproject.org/files/ENCFF482MDB/@@download/ENCFF482MDB.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF042QVS bigWig fold change over control ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF144XUD, ENCFF732BTE 340930307 ENCODE Processing Pipeline f00d948aad565d88cd347e3be36ecf86 https://www.encodeproject.org/files/ENCFF042QVS/@@download/ENCFF042QVS.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF182LNH bigBed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF673SKG 13100249 ENCODE Processing Pipeline 88a871429eba501ebb11fab4c2c122a8 https://www.encodeproject.org/files/ENCFF182LNH/@@download/ENCFF182LNH.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF022QNU bigBed narrowPeak optimal idr thresholded peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF908HDA 205342 ENCODE Processing Pipeline aeb32ef276b0f9c93fab9bbc796030c7 https://www.encodeproject.org/files/ENCFF022QNU/@@download/ENCFF022QNU.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF072TOT fastq reads ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 1 40 single-ended 1716689374 Xiang-Dong Fu, UCSD 7f2dea654649b9ce43966ee573e37e08 https://www.encodeproject.org/files/ENCFF072TOT/@@download/ENCFF072TOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF218RAX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF746USU fastq reads ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 1 40 single-ended 1709433821 Xiang-Dong Fu, UCSD 1991317ecb33d2cd1f417dddc13f7771 https://www.encodeproject.org/files/ENCFF746USU/@@download/ENCFF746USU.fastq.gz Illumina HiSeq 2000 /files/ENCFF743NIF/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF426PCO bam unfiltered alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF072TOT, ENCFF643CGH 2070467381 ENCODE Processing Pipeline b07e9eaee27d69df848c8bc072e7f0be https://www.encodeproject.org/files/ENCFF426PCO/@@download/ENCFF426PCO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF060XFX bam unfiltered alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF643CGH, ENCFF746USU 2143901584 ENCODE Processing Pipeline 1f2d3350e68e1f2667cbe2416e04c034 https://www.encodeproject.org/files/ENCFF060XFX/@@download/ENCFF060XFX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF287NMD bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF072TOT, ENCFF643CGH 694393443 ENCODE Processing Pipeline 69af06eee585cbe84d829bd51a3ee844 https://www.encodeproject.org/files/ENCFF287NMD/@@download/ENCFF287NMD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF619DQL bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF643CGH, ENCFF746USU 932509056 ENCODE Processing Pipeline 12f881095c2a90e486b93dea8c1002f8 https://www.encodeproject.org/files/ENCFF619DQL/@@download/ENCFF619DQL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF004RUY bam unfiltered alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF746USU, ENCFF807MUK 2136362939 ENCODE Processing Pipeline 0f83862010e4bfaddd13d29c6f2ecb3b https://www.encodeproject.org/files/ENCFF004RUY/@@download/ENCFF004RUY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF272YQK bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF746USU, ENCFF807MUK 933333977 ENCODE Processing Pipeline 0936655c8185ae01de61eb777a10baa9 https://www.encodeproject.org/files/ENCFF272YQK/@@download/ENCFF272YQK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF012EGY bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF072TOT, ENCFF807MUK 695110525 ENCODE Processing Pipeline 3ba0fa0c864a9d96c41070ed03b73142 https://www.encodeproject.org/files/ENCFF012EGY/@@download/ENCFF012EGY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF630STG bam unfiltered alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF072TOT, ENCFF807MUK 2063054345 ENCODE Processing Pipeline fc55e787af006e144ae88134e4653a37 https://www.encodeproject.org/files/ENCFF630STG/@@download/ENCFF630STG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF825OGX bigWig fold change over control ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF619DQL, ENCFF842ALK 504023457 ENCODE Processing Pipeline 50707108ef29d4bbcab99023a0f40edc https://www.encodeproject.org/files/ENCFF825OGX/@@download/ENCFF825OGX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF561EUU bigWig signal p-value ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF619DQL, ENCFF842ALK 599623965 ENCODE Processing Pipeline e8e0291815c319405bf2406bca503221 https://www.encodeproject.org/files/ENCFF561EUU/@@download/ENCFF561EUU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF825XTG bigWig signal p-value ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF287NMD, ENCFF736TJP 575222373 ENCODE Processing Pipeline ddb5fe5874deb7f89a66541eff503ca9 https://www.encodeproject.org/files/ENCFF825XTG/@@download/ENCFF825XTG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF393VRT bigWig signal p-value ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF287NMD, ENCFF619DQL, ENCFF736TJP, ENCFF842ALK 1043363610 ENCODE Processing Pipeline ce2e5dc61278f8ae90d400469baceb77 https://www.encodeproject.org/files/ENCFF393VRT/@@download/ENCFF393VRT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF292UIZ bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF287NMD, ENCFF736TJP 5187815 ENCODE Processing Pipeline 6fe74358c1838e112feeb39b0953572e https://www.encodeproject.org/files/ENCFF292UIZ/@@download/ENCFF292UIZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF472JMW bigBed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF292UIZ 11049707 ENCODE Processing Pipeline 94cc150f24cd7cb54bd4db180fbbcbff https://www.encodeproject.org/files/ENCFF472JMW/@@download/ENCFF472JMW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF581MUI bigWig fold change over control ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF287NMD, ENCFF736TJP 437415691 ENCODE Processing Pipeline ef11a9a7bfddde37c226d26303dbd98b https://www.encodeproject.org/files/ENCFF581MUI/@@download/ENCFF581MUI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF476GVF bigBed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF824AIG 13224950 ENCODE Processing Pipeline d1fce2f5305539a9f67fcdd600772a73 https://www.encodeproject.org/files/ENCFF476GVF/@@download/ENCFF476GVF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF615WGO bigWig fold change over control ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF287NMD, ENCFF619DQL, ENCFF736TJP, ENCFF842ALK 1073757115 ENCODE Processing Pipeline e5a5848ccc3eedb205afecf304c88b8b https://www.encodeproject.org/files/ENCFF615WGO/@@download/ENCFF615WGO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF824AIG bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF287NMD, ENCFF619DQL, ENCFF736TJP, ENCFF842ALK 6850798 ENCODE Processing Pipeline c133b7b16b5355e48d37ea3f30c9ee27 https://www.encodeproject.org/files/ENCFF824AIG/@@download/ENCFF824AIG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF940DGR bigBed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF722JQU 13201864 ENCODE Processing Pipeline d9bebaf4e09468dc3f5d155d57fa61e8 https://www.encodeproject.org/files/ENCFF940DGR/@@download/ENCFF940DGR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF337SRB bed narrowPeak conservative idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF292UIZ, ENCFF419RSJ, ENCFF722JQU, ENCFF824AIG 45177 ENCODE Processing Pipeline c4516339b4b02b37aac12afa601a0a33 https://www.encodeproject.org/files/ENCFF337SRB/@@download/ENCFF337SRB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF716UKD bigBed narrowPeak conservative idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF337SRB 143792 ENCODE Processing Pipeline 4661f0decfceffbd2ba2901adffbdc51 https://www.encodeproject.org/files/ENCFF716UKD/@@download/ENCFF716UKD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF039LHY bed narrowPeak optimal idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF292UIZ, ENCFF419RSJ, ENCFF722JQU, ENCFF824AIG 55213 ENCODE Processing Pipeline d99f1df76c3a2ebd93c2a6b63dd56912 https://www.encodeproject.org/files/ENCFF039LHY/@@download/ENCFF039LHY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF788OMU bigBed narrowPeak optimal idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF039LHY 160383 ENCODE Processing Pipeline 820db1d7bbc33b9e49f1e7520ce29ae9 https://www.encodeproject.org/files/ENCFF788OMU/@@download/ENCFF788OMU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF722JQU bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF619DQL, ENCFF842ALK 5423862 ENCODE Processing Pipeline 1caef7cfaebf366210284463b4ec597f https://www.encodeproject.org/files/ENCFF722JQU/@@download/ENCFF722JQU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF461JBU bigWig signal p-value ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF012EGY, ENCFF568YOD 647119240 ENCODE Processing Pipeline d74ce753a51acae4ed6fb0ee55cc992e https://www.encodeproject.org/files/ENCFF461JBU/@@download/ENCFF461JBU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF076PPX bigWig fold change over control ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF012EGY, ENCFF568YOD 435507762 ENCODE Processing Pipeline 666d84c8deda9e6a3ee5f66724ea4828 https://www.encodeproject.org/files/ENCFF076PPX/@@download/ENCFF076PPX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF018OZI bigWig signal p-value ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF083RZJ, ENCFF272YQK 652210882 ENCODE Processing Pipeline cd26a76326307bf6ccedb04b589cb118 https://www.encodeproject.org/files/ENCFF018OZI/@@download/ENCFF018OZI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF530JCP bigWig fold change over control ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF083RZJ, ENCFF272YQK 510608120 ENCODE Processing Pipeline 75cba2b336ee79c34d921f91f786e100 https://www.encodeproject.org/files/ENCFF530JCP/@@download/ENCFF530JCP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF017AUX bigWig signal p-value ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF012EGY, ENCFF083RZJ, ENCFF272YQK, ENCFF568YOD 1234590182 ENCODE Processing Pipeline 76cf8f4b461b757198eaadd85e2ba56a https://www.encodeproject.org/files/ENCFF017AUX/@@download/ENCFF017AUX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF929NFJ bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF083RZJ, ENCFF272YQK 5491181 ENCODE Processing Pipeline e1ee9fd1d3080877787ba93b681701fb https://www.encodeproject.org/files/ENCFF929NFJ/@@download/ENCFF929NFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF250IFI bigBed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF929NFJ 13198608 ENCODE Processing Pipeline d4e70dcc66cdbc2ce85b414a5223abdd https://www.encodeproject.org/files/ENCFF250IFI/@@download/ENCFF250IFI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF470NKI bigWig fold change over control ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF012EGY, ENCFF083RZJ, ENCFF272YQK, ENCFF568YOD 1053575044 ENCODE Processing Pipeline 07453e464be7f52297657b7347055fa9 https://www.encodeproject.org/files/ENCFF470NKI/@@download/ENCFF470NKI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF013SWZ bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF012EGY, ENCFF568YOD 5261367 ENCODE Processing Pipeline 4b949e53067838c194ce709347a0c62d https://www.encodeproject.org/files/ENCFF013SWZ/@@download/ENCFF013SWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF265HFX bigBed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF013SWZ 11050584 ENCODE Processing Pipeline f806f048540dd825b8890eae4aa19ef0 https://www.encodeproject.org/files/ENCFF265HFX/@@download/ENCFF265HFX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF845HVY bigBed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF172AES 13219425 ENCODE Processing Pipeline dddb176a81097a5e427d2739b996738c https://www.encodeproject.org/files/ENCFF845HVY/@@download/ENCFF845HVY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF582MJO bigBed narrowPeak conservative idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF478NLQ 141485 ENCODE Processing Pipeline b122fce244766e4d924a7ce8bd8b95de https://www.encodeproject.org/files/ENCFF582MJO/@@download/ENCFF582MJO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF179VAN bigBed narrowPeak optimal idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF671IJY 158008 ENCODE Processing Pipeline 6a2bda62992bba3644423d203386c767 https://www.encodeproject.org/files/ENCFF179VAN/@@download/ENCFF179VAN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF172AES bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF012EGY, ENCFF083RZJ, ENCFF272YQK, ENCFF568YOD 6847041 ENCODE Processing Pipeline 354da0f4963239e9500b93fecd16b4a9 https://www.encodeproject.org/files/ENCFF172AES/@@download/ENCFF172AES.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF478NLQ bed narrowPeak conservative idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF001TDO, ENCFF013SWZ, ENCFF172AES, ENCFF929NFJ 44166 ENCODE Processing Pipeline 7ba86a2565d1dbbbd7b3feecf372fb65 https://www.encodeproject.org/files/ENCFF478NLQ/@@download/ENCFF478NLQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF671IJY bed narrowPeak optimal idr thresholded peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF001TDO, ENCFF013SWZ, ENCFF172AES, ENCFF929NFJ 54183 ENCODE Processing Pipeline 5cda46e2ece43da7153cc0b588f5c322 https://www.encodeproject.org/files/ENCFF671IJY/@@download/ENCFF671IJY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF544CJY fastq reads ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF810COJ 3946427162 Michael Snyder, Stanford f33dd0b168bbd27198ec3743f5687a80 SRA:SRR5111336 https://www.encodeproject.org/files/ENCFF544CJY/@@download/ENCFF544CJY.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released borderline replicate concordance ENCFF382VVC fastq reads ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF383NLP 4343035263 Michael Snyder, Stanford 84c7d90f4533d941df9eb25edb445aed SRA:SRR5111337 https://www.encodeproject.org/files/ENCFF382VVC/@@download/ENCFF382VVC.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released borderline replicate concordance ENCFF810COJ fastq reads ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF544CJY 3987501623 Michael Snyder, Stanford 2b1e309b2d6c33fc4b82fc287061eb5e SRA:SRR5111336 https://www.encodeproject.org/files/ENCFF810COJ/@@download/ENCFF810COJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released borderline replicate concordance ENCFF383NLP fastq reads ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF382VVC 4400909621 Michael Snyder, Stanford 819a218f7aca6ed18db7180961ef525c SRA:SRR5111337 https://www.encodeproject.org/files/ENCFF383NLP/@@download/ENCFF383NLP.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released borderline replicate concordance ENCFF104LDD bam unfiltered alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF382VVC, ENCFF383NLP, ENCFF807MUK 8760328981 ENCODE Processing Pipeline c1a0aee9039e610579882a7a867ff7c7 https://www.encodeproject.org/files/ENCFF104LDD/@@download/ENCFF104LDD.bam hg19 released borderline replicate concordance ENCFF857OFK bam unfiltered alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF544CJY, ENCFF807MUK, ENCFF810COJ 7986892383 ENCODE Processing Pipeline d23db0d4492dbebaa6fa44dbfb406fa1 https://www.encodeproject.org/files/ENCFF857OFK/@@download/ENCFF857OFK.bam hg19 released borderline replicate concordance ENCFF922YTF bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF544CJY, ENCFF807MUK, ENCFF810COJ 6552040595 ENCODE Processing Pipeline db23d6fa5b6bf7e52af77b06ffa88a83 https://www.encodeproject.org/files/ENCFF922YTF/@@download/ENCFF922YTF.bam hg19 released borderline replicate concordance ENCFF993THI bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF382VVC, ENCFF383NLP, ENCFF807MUK 7389355184 ENCODE Processing Pipeline 303fc14ffabcb3d3d8305c714603160f https://www.encodeproject.org/files/ENCFF993THI/@@download/ENCFF993THI.bam hg19 released borderline replicate concordance ENCFF126NIZ bam unfiltered alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF544CJY, ENCFF643CGH, ENCFF810COJ 7998321442 ENCODE Processing Pipeline 9200ba12b08b00298b7b79f00097b54c https://www.encodeproject.org/files/ENCFF126NIZ/@@download/ENCFF126NIZ.bam GRCh38 released borderline replicate concordance ENCFF142YLJ bam unfiltered alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF382VVC, ENCFF383NLP, ENCFF643CGH 8771852148 ENCODE Processing Pipeline 41114ad6645561dc8deaaaf232b849d6 https://www.encodeproject.org/files/ENCFF142YLJ/@@download/ENCFF142YLJ.bam GRCh38 released borderline replicate concordance ENCFF054HSY bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF382VVC, ENCFF383NLP, ENCFF643CGH 7396390139 ENCODE Processing Pipeline c301db525c1a81a764432874c342123d https://www.encodeproject.org/files/ENCFF054HSY/@@download/ENCFF054HSY.bam GRCh38 released borderline replicate concordance ENCFF724LHA bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF544CJY, ENCFF643CGH, ENCFF810COJ 6558716004 ENCODE Processing Pipeline bbf36f0fc7d9aa4731a81669c084853e https://www.encodeproject.org/files/ENCFF724LHA/@@download/ENCFF724LHA.bam GRCh38 released borderline replicate concordance ENCFF742QRQ bigWig fold change over control ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF724LHA 1369410100 ENCODE Processing Pipeline 218d661d2be30e399196f73c5c35fc5c https://www.encodeproject.org/files/ENCFF742QRQ/@@download/ENCFF742QRQ.bigWig GRCh38 released borderline replicate concordance ENCFF007AZR bigWig signal p-value ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF054HSY, ENCFF290DLX, ENCFF488RJA 1803984868 ENCODE Processing Pipeline b2ef205fb1c2837c08993f946dedcf9f https://www.encodeproject.org/files/ENCFF007AZR/@@download/ENCFF007AZR.bigWig GRCh38 released borderline replicate concordance ENCFF629XNP bigWig signal p-value ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF724LHA 1396051914 ENCODE Processing Pipeline 0392b566961cde46ff8b4904aa9481be https://www.encodeproject.org/files/ENCFF629XNP/@@download/ENCFF629XNP.bigWig GRCh38 released borderline replicate concordance ENCFF631NFW bigWig signal p-value ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF054HSY, ENCFF290DLX, ENCFF488RJA, ENCFF724LHA 2318110573 ENCODE Processing Pipeline 1758cad08bbb17d49f0cd76f0c6b2132 https://www.encodeproject.org/files/ENCFF631NFW/@@download/ENCFF631NFW.bigWig GRCh38 released borderline replicate concordance ENCFF792JBE bigWig fold change over control ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF054HSY, ENCFF290DLX, ENCFF488RJA 1875730343 ENCODE Processing Pipeline e91cdfc2b31746f662b0e89353fe1702 https://www.encodeproject.org/files/ENCFF792JBE/@@download/ENCFF792JBE.bigWig GRCh38 released borderline replicate concordance ENCFF686MNU bigWig fold change over control ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF054HSY, ENCFF290DLX, ENCFF488RJA, ENCFF724LHA 2423024143 ENCODE Processing Pipeline 38b8e6f42af99508709cf7dc5c4f2594 https://www.encodeproject.org/files/ENCFF686MNU/@@download/ENCFF686MNU.bigWig GRCh38 released borderline replicate concordance ENCFF161NOR bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF054HSY, ENCFF290DLX, ENCFF488RJA 6747311 ENCODE Processing Pipeline 06569b77d073ba7d3396ea918930e012 https://www.encodeproject.org/files/ENCFF161NOR/@@download/ENCFF161NOR.bed.gz GRCh38 released borderline replicate concordance ENCFF812OSU bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF724LHA 6470543 ENCODE Processing Pipeline 5bc0bbc122d73a6d1c4ff31162449b4e https://www.encodeproject.org/files/ENCFF812OSU/@@download/ENCFF812OSU.bed.gz GRCh38 released borderline replicate concordance ENCFF075UUY bigBed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF812OSU 11495815 ENCODE Processing Pipeline 403cf485d55264539113f0c9a2bab6f9 https://www.encodeproject.org/files/ENCFF075UUY/@@download/ENCFF075UUY.bigBed GRCh38 released borderline replicate concordance ENCFF826PNR bigBed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF161NOR 11380028 ENCODE Processing Pipeline 7a19a4ae9cdbe69985db8f1a5d892329 https://www.encodeproject.org/files/ENCFF826PNR/@@download/ENCFF826PNR.bigBed GRCh38 released borderline replicate concordance ENCFF782KPF bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF054HSY, ENCFF290DLX, ENCFF488RJA, ENCFF724LHA 7260669 ENCODE Processing Pipeline 1740804ead79c0a44124a860db09355b https://www.encodeproject.org/files/ENCFF782KPF/@@download/ENCFF782KPF.bed.gz GRCh38 released borderline replicate concordance ENCFF486PJO bigBed narrowPeak conservative idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF627NBS 274086 ENCODE Processing Pipeline 3d3988ee3ca5de014b41bcd046525e31 https://www.encodeproject.org/files/ENCFF486PJO/@@download/ENCFF486PJO.bigBed GRCh38 released borderline replicate concordance ENCFF533ROM bigBed narrowPeak optimal idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF867WWZ 361167 ENCODE Processing Pipeline 90ceae8beec251fd221dc6bb63e49dba https://www.encodeproject.org/files/ENCFF533ROM/@@download/ENCFF533ROM.bigBed GRCh38 released borderline replicate concordance ENCFF886QNA bigBed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF782KPF 11399973 ENCODE Processing Pipeline 450e37bf5513ff8870a43959c5000897 https://www.encodeproject.org/files/ENCFF886QNA/@@download/ENCFF886QNA.bigBed GRCh38 released borderline replicate concordance ENCFF627NBS bed narrowPeak conservative idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF161NOR, ENCFF419RSJ, ENCFF782KPF, ENCFF812OSU 109253 ENCODE Processing Pipeline bb8fd0968b8a5829f1dae2a50ec566bd https://www.encodeproject.org/files/ENCFF627NBS/@@download/ENCFF627NBS.bed.gz GRCh38 released borderline replicate concordance ENCFF867WWZ bed narrowPeak optimal idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF161NOR, ENCFF419RSJ, ENCFF782KPF, ENCFF812OSU 163049 ENCODE Processing Pipeline bf9113bf6110146023b0a7ced67be758 https://www.encodeproject.org/files/ENCFF867WWZ/@@download/ENCFF867WWZ.bed.gz GRCh38 released borderline replicate concordance ENCFF844GIX bigWig signal p-value ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF760DHW, ENCFF993THI 1830967471 ENCODE Processing Pipeline ef2e69bc5643e7112ba51b5c5cc139f1 https://www.encodeproject.org/files/ENCFF844GIX/@@download/ENCFF844GIX.bigWig hg19 released borderline replicate concordance ENCFF973KEP bigWig signal p-value ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF760DHW, ENCFF922YTF 1385079953 ENCODE Processing Pipeline 9b9073821266f2227268604d36c1b26c https://www.encodeproject.org/files/ENCFF973KEP/@@download/ENCFF973KEP.bigWig hg19 released borderline replicate concordance ENCFF351ZZP bigWig signal p-value ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF760DHW, ENCFF922YTF, ENCFF993THI 2338822748 ENCODE Processing Pipeline fa51e7909eecebac2aa829f3d5dd6410 https://www.encodeproject.org/files/ENCFF351ZZP/@@download/ENCFF351ZZP.bigWig hg19 released borderline replicate concordance ENCFF364SZV bigWig fold change over control ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF760DHW, ENCFF993THI 1871301320 ENCODE Processing Pipeline 3645aa42fd6294eac37b2b5bb2836e0a https://www.encodeproject.org/files/ENCFF364SZV/@@download/ENCFF364SZV.bigWig hg19 released borderline replicate concordance ENCFF648SAS bigWig fold change over control ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF760DHW, ENCFF922YTF 1335506494 ENCODE Processing Pipeline e5bf7023c6586fbea51d0e01b8dff875 https://www.encodeproject.org/files/ENCFF648SAS/@@download/ENCFF648SAS.bigWig hg19 released borderline replicate concordance ENCFF755ADC bigWig fold change over control ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF760DHW, ENCFF922YTF, ENCFF993THI 2436598483 ENCODE Processing Pipeline 0e02ef374fb5767af7b5bee7da45f825 https://www.encodeproject.org/files/ENCFF755ADC/@@download/ENCFF755ADC.bigWig hg19 released borderline replicate concordance ENCFF094ESY bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF760DHW, ENCFF922YTF, ENCFF993THI 7249743 ENCODE Processing Pipeline 8b5a6e92744d3e7e2662d36393950659 https://www.encodeproject.org/files/ENCFF094ESY/@@download/ENCFF094ESY.bed.gz hg19 released borderline replicate concordance ENCFF031LVS bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF760DHW, ENCFF993THI 6741875 ENCODE Processing Pipeline df3c5dd321034b12ce8fc8befc607450 https://www.encodeproject.org/files/ENCFF031LVS/@@download/ENCFF031LVS.bed.gz hg19 released borderline replicate concordance ENCFF851UVY bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF760DHW, ENCFF922YTF 6466064 ENCODE Processing Pipeline fa55ce31f0934c16ae9af3279a456565 https://www.encodeproject.org/files/ENCFF851UVY/@@download/ENCFF851UVY.bed.gz hg19 released borderline replicate concordance ENCFF487MPT bigBed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF094ESY 11377786 ENCODE Processing Pipeline 97eba4ee5f686cdeba314140495c481b https://www.encodeproject.org/files/ENCFF487MPT/@@download/ENCFF487MPT.bigBed hg19 released borderline replicate concordance ENCFF523NXP bed narrowPeak optimal idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF031LVS, ENCFF094ESY, ENCFF851UVY 160167 ENCODE Processing Pipeline bc4c1b6642b6d7699879f3ae0fdc01fe https://www.encodeproject.org/files/ENCFF523NXP/@@download/ENCFF523NXP.bed.gz hg19 released borderline replicate concordance ENCFF415VSJ bigBed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF031LVS 11362504 ENCODE Processing Pipeline bf1fe19a31b2c1805c428c4d9be7a983 https://www.encodeproject.org/files/ENCFF415VSJ/@@download/ENCFF415VSJ.bigBed hg19 released borderline replicate concordance ENCFF058CHU bigBed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF851UVY 11479053 ENCODE Processing Pipeline b372c99e2b3356271520d961d3c8da4f https://www.encodeproject.org/files/ENCFF058CHU/@@download/ENCFF058CHU.bigBed hg19 released borderline replicate concordance ENCFF861TAJ bed narrowPeak conservative idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF031LVS, ENCFF094ESY, ENCFF851UVY 106663 ENCODE Processing Pipeline 167ad190e8352477e00b6ee040486ad1 https://www.encodeproject.org/files/ENCFF861TAJ/@@download/ENCFF861TAJ.bed.gz hg19 released borderline replicate concordance ENCFF597NTE bigBed narrowPeak conservative idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF861TAJ 268805 ENCODE Processing Pipeline 9321fe5d8eafbb2d59400b8df1827ace https://www.encodeproject.org/files/ENCFF597NTE/@@download/ENCFF597NTE.bigBed hg19 released borderline replicate concordance ENCFF088YGY bigBed narrowPeak optimal idr thresholded peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF523NXP 353938 ENCODE Processing Pipeline 6e6664b4f8235dcd22cf228fb933666e https://www.encodeproject.org/files/ENCFF088YGY/@@download/ENCFF088YGY.bigBed hg19 released borderline replicate concordance ENCFF999VUF fastq reads ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 726731061 Xiang-Dong Fu, UCSD 4f7bb954d3d18a1c90edcad584eac300 https://www.encodeproject.org/files/ENCFF999VUF/@@download/ENCFF999VUF.fastq.gz Illumina HiSeq 2500 /files/ENCFF025UQF/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF753OYD fastq reads ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 824050518 Xiang-Dong Fu, UCSD 733834bf859f0ddd2650eddb640c75e8 https://www.encodeproject.org/files/ENCFF753OYD/@@download/ENCFF753OYD.fastq.gz Illumina HiSeq 2500 /files/ENCFF201ZVH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF791DFG bam unfiltered alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF999VUF 914414822 ENCODE Processing Pipeline ce51ddb72c8b2f01048ebdb8d954472a https://www.encodeproject.org/files/ENCFF791DFG/@@download/ENCFF791DFG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF594IKC bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF999VUF 501564193 ENCODE Processing Pipeline 65a1c84412f2255d5e03eeedada58074 https://www.encodeproject.org/files/ENCFF594IKC/@@download/ENCFF594IKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF904WUN bam unfiltered alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF999VUF 917748961 ENCODE Processing Pipeline 6667580a9b82483fc163bb763776fe5f https://www.encodeproject.org/files/ENCFF904WUN/@@download/ENCFF904WUN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF510PCF bam unfiltered alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF753OYD, ENCFF807MUK 1029154001 ENCODE Processing Pipeline 384343859ab8fad0389389f6581bd295 https://www.encodeproject.org/files/ENCFF510PCF/@@download/ENCFF510PCF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF658SGW bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF999VUF 501025320 ENCODE Processing Pipeline 434842bc7b61d77ae7f7e5bb34f159cb https://www.encodeproject.org/files/ENCFF658SGW/@@download/ENCFF658SGW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF870AMF bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF753OYD, ENCFF807MUK 551254873 ENCODE Processing Pipeline 405cf588abfaa5efa1b5dc776d808bae https://www.encodeproject.org/files/ENCFF870AMF/@@download/ENCFF870AMF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF278POV bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF643CGH, ENCFF753OYD 550703548 ENCODE Processing Pipeline c44b2405357b640c6a9a5873ea1369ca https://www.encodeproject.org/files/ENCFF278POV/@@download/ENCFF278POV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF826IAO bam unfiltered alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF643CGH, ENCFF753OYD 1033459422 ENCODE Processing Pipeline 45e478d5a9f19aed868cc15820823d70 https://www.encodeproject.org/files/ENCFF826IAO/@@download/ENCFF826IAO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF351HSM bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF477SGV, ENCFF594IKC 5428885 ENCODE Processing Pipeline a7fd826f7392e09bc6263c84edd354dc https://www.encodeproject.org/files/ENCFF351HSM/@@download/ENCFF351HSM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF568TTD bigBed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF706ONY 13097170 ENCODE Processing Pipeline ab75db427c5578315c33d190430e510a https://www.encodeproject.org/files/ENCFF568TTD/@@download/ENCFF568TTD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF856WBX bigWig fold change over control ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF477SGV, ENCFF594IKC 313639074 ENCODE Processing Pipeline 4769b9286612d7c6b71ec5d5f6ab2f13 https://www.encodeproject.org/files/ENCFF856WBX/@@download/ENCFF856WBX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF706ONY bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF870AMF 5478238 ENCODE Processing Pipeline 022d8a2670228f69d1e6f043311b001e https://www.encodeproject.org/files/ENCFF706ONY/@@download/ENCFF706ONY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF325SFZ bed narrowPeak conservative idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF253KPM, ENCFF351HSM, ENCFF706ONY 5341 ENCODE Processing Pipeline 65bfc34b644f852d6cf86edaec4fbf98 https://www.encodeproject.org/files/ENCFF325SFZ/@@download/ENCFF325SFZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF292JRY bed narrowPeak optimal idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF253KPM, ENCFF351HSM, ENCFF706ONY 6299 ENCODE Processing Pipeline 97f2c8d1d04eee8ffadd48bb50e8f670 https://www.encodeproject.org/files/ENCFF292JRY/@@download/ENCFF292JRY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF254PLU bigWig signal p-value ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF477SGV, ENCFF594IKC 385363122 ENCODE Processing Pipeline 6b2faaf3c01039e6e2d1249ccdd25bd4 https://www.encodeproject.org/files/ENCFF254PLU/@@download/ENCFF254PLU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF133JFO bigWig signal p-value ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF870AMF 412540017 ENCODE Processing Pipeline 6e998ce744ff997d76ca4d329562cf89 https://www.encodeproject.org/files/ENCFF133JFO/@@download/ENCFF133JFO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF666JWH bigBed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF253KPM 13252155 ENCODE Processing Pipeline 74a2ba1605b9ba4927abeed514ab55ed https://www.encodeproject.org/files/ENCFF666JWH/@@download/ENCFF666JWH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF238AUB bigWig signal p-value ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF477SGV, ENCFF594IKC, ENCFF705ZEH, ENCFF870AMF 703964966 ENCODE Processing Pipeline 6cbb388fa61a47cc69dfd8831a65842a https://www.encodeproject.org/files/ENCFF238AUB/@@download/ENCFF238AUB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF578VSR bigWig fold change over control ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF870AMF 315489242 ENCODE Processing Pipeline aebe422325b93a5a7d0e6fd806dc146c https://www.encodeproject.org/files/ENCFF578VSR/@@download/ENCFF578VSR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF424LYB bigWig fold change over control ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF477SGV, ENCFF594IKC, ENCFF705ZEH, ENCFF870AMF 690741757 ENCODE Processing Pipeline ee6d58d1e2158d1cd5f4a9e5710389d3 https://www.encodeproject.org/files/ENCFF424LYB/@@download/ENCFF424LYB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF253KPM bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF477SGV, ENCFF594IKC, ENCFF705ZEH, ENCFF870AMF 6661099 ENCODE Processing Pipeline fa73763851765d75c1c4095a95481d2a https://www.encodeproject.org/files/ENCFF253KPM/@@download/ENCFF253KPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF339BWX bigBed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF351HSM 13090422 ENCODE Processing Pipeline 709bf3c9e8a827de02adb6443e9c23d7 https://www.encodeproject.org/files/ENCFF339BWX/@@download/ENCFF339BWX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF968BHS bigBed narrowPeak conservative idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF325SFZ 93413 ENCODE Processing Pipeline d629d56643bb0d23a4757765d7a495e1 https://www.encodeproject.org/files/ENCFF968BHS/@@download/ENCFF968BHS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF674SSL bigBed narrowPeak optimal idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF292JRY 96979 ENCODE Processing Pipeline 2951b0afa2bbef9cd337f0a022582632 https://www.encodeproject.org/files/ENCFF674SSL/@@download/ENCFF674SSL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF478CZF bigWig fold change over control ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF308PSW, ENCFF658SGW 297562091 ENCODE Processing Pipeline 43b0d8d33f468bbbd209cfb83e7af9f1 https://www.encodeproject.org/files/ENCFF478CZF/@@download/ENCFF478CZF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF859JWK bigWig signal p-value ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF198JCQ, ENCFF278POV 413327751 ENCODE Processing Pipeline 65597de38b7999f8002314c6c016bd8c https://www.encodeproject.org/files/ENCFF859JWK/@@download/ENCFF859JWK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF541UDD bigWig fold change over control ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF198JCQ, ENCFF278POV 315442017 ENCODE Processing Pipeline e25afdb002c556340d3caf69e862b8e8 https://www.encodeproject.org/files/ENCFF541UDD/@@download/ENCFF541UDD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF953NCJ bigWig signal p-value ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF198JCQ, ENCFF278POV, ENCFF308PSW, ENCFF658SGW 774525557 ENCODE Processing Pipeline a08c0c80ab4f82745546b2bcf0c850f2 https://www.encodeproject.org/files/ENCFF953NCJ/@@download/ENCFF953NCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF489LOZ bigWig signal p-value ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF308PSW, ENCFF658SGW 442823769 ENCODE Processing Pipeline bb957cae3b6e66e55b7e5d864cb9ab0c https://www.encodeproject.org/files/ENCFF489LOZ/@@download/ENCFF489LOZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF081ACP bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF308PSW, ENCFF658SGW 5338305 ENCODE Processing Pipeline bd9559f58f024fe68bfc56e42e1883b2 https://www.encodeproject.org/files/ENCFF081ACP/@@download/ENCFF081ACP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF413RAW bigBed narrowPeak conservative idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF920ETU 96909 ENCODE Processing Pipeline f75f1d807000ab6e8b43246168c0117e https://www.encodeproject.org/files/ENCFF413RAW/@@download/ENCFF413RAW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF844QFF bed narrowPeak optimal idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF081ACP, ENCFF419RSJ, ENCFF782XJI, ENCFF808QGE 6512 ENCODE Processing Pipeline 8dc20f0543a8aac6dd4f4ee582d0a74e https://www.encodeproject.org/files/ENCFF844QFF/@@download/ENCFF844QFF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF142BIO bigBed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF782XJI 13114926 ENCODE Processing Pipeline 18a683d65478ee2f95149987284d1507 https://www.encodeproject.org/files/ENCFF142BIO/@@download/ENCFF142BIO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF452ULT bigWig fold change over control ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF198JCQ, ENCFF278POV, ENCFF308PSW, ENCFF658SGW 690178553 ENCODE Processing Pipeline 35d860b0e7649e312e00575df59d2e80 https://www.encodeproject.org/files/ENCFF452ULT/@@download/ENCFF452ULT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF808QGE bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF198JCQ, ENCFF278POV, ENCFF308PSW, ENCFF658SGW 6562899 ENCODE Processing Pipeline 337e9be3e4864946d231a4f40b2b8640 https://www.encodeproject.org/files/ENCFF808QGE/@@download/ENCFF808QGE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF920ETU bed narrowPeak conservative idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF081ACP, ENCFF419RSJ, ENCFF782XJI, ENCFF808QGE 6194 ENCODE Processing Pipeline 6b246d329f86049569269f5320ab6937 https://www.encodeproject.org/files/ENCFF920ETU/@@download/ENCFF920ETU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF782XJI bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF198JCQ, ENCFF278POV 5364225 ENCODE Processing Pipeline 8b2104ce03a85afd3dfa8ed9cc04cc20 https://www.encodeproject.org/files/ENCFF782XJI/@@download/ENCFF782XJI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF580QSY bigBed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF081ACP 13123218 ENCODE Processing Pipeline 9869f4cd5bc4557752b86bcc9665d057 https://www.encodeproject.org/files/ENCFF580QSY/@@download/ENCFF580QSY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF845COV bigBed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF808QGE 13281579 ENCODE Processing Pipeline de58992c2fcbbcf5c7e1a4f6f4c8067f https://www.encodeproject.org/files/ENCFF845COV/@@download/ENCFF845COV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF115QJK bigBed narrowPeak optimal idr thresholded peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF844QFF 98326 ENCODE Processing Pipeline 6bf89725182a388ed332e4df72b324f9 https://www.encodeproject.org/files/ENCFF115QJK/@@download/ENCFF115QJK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF691KWL fastq reads ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF017YSG 2822397691 Michael Snyder, Stanford dbd1682c5d4edb865bb9cff4b6024731 SRA:SRR5111119 https://www.encodeproject.org/files/ENCFF691KWL/@@download/ENCFF691KWL.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released mild to moderate bottlenecking ENCFF017YSG fastq reads ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF691KWL 2780305422 Michael Snyder, Stanford 6c62723c4609f8b8d82874d7eba66b74 SRA:SRR5111119 https://www.encodeproject.org/files/ENCFF017YSG/@@download/ENCFF017YSG.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released mild to moderate bottlenecking ENCFF613WSV fastq reads ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF809EPG 3391855791 Michael Snyder, Stanford 0efd44b5604e56e150c7409553799a6d SRA:SRR5111118 https://www.encodeproject.org/files/ENCFF613WSV/@@download/ENCFF613WSV.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released mild to moderate bottlenecking ENCFF809EPG fastq reads ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF613WSV 3435970331 Michael Snyder, Stanford c5853a8c8835024f5021f34334b87c8e SRA:SRR5111118 https://www.encodeproject.org/files/ENCFF809EPG/@@download/ENCFF809EPG.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released mild to moderate bottlenecking ENCFF445ZJB bam unfiltered alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF017YSG, ENCFF691KWL, ENCFF807MUK 5743569130 ENCODE Processing Pipeline 7729a9c07937f0717e1daf342bfe0b0a https://www.encodeproject.org/files/ENCFF445ZJB/@@download/ENCFF445ZJB.bam hg19 released mild to moderate bottlenecking ENCFF835EKG bam unfiltered alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF613WSV, ENCFF807MUK, ENCFF809EPG 6879855020 ENCODE Processing Pipeline b30c27eb6bdaa890fa65727608198592 https://www.encodeproject.org/files/ENCFF835EKG/@@download/ENCFF835EKG.bam hg19 released mild to moderate bottlenecking ENCFF339ZHE bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF017YSG, ENCFF691KWL, ENCFF807MUK 4451042718 ENCODE Processing Pipeline d05ee88bd39e21c07c8ef8410c8ea018 https://www.encodeproject.org/files/ENCFF339ZHE/@@download/ENCFF339ZHE.bam hg19 released mild to moderate bottlenecking ENCFF068ELI bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF613WSV, ENCFF807MUK, ENCFF809EPG 5280813302 ENCODE Processing Pipeline df3790cac6f639e3bcbf88c4ca547fea https://www.encodeproject.org/files/ENCFF068ELI/@@download/ENCFF068ELI.bam hg19 released mild to moderate bottlenecking ENCFF210CBH bam unfiltered alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF613WSV, ENCFF643CGH, ENCFF809EPG 6887115437 ENCODE Processing Pipeline ecaed7246c89dd7d1c231993368cd56a https://www.encodeproject.org/files/ENCFF210CBH/@@download/ENCFF210CBH.bam GRCh38 released mild to moderate bottlenecking ENCFF620RWC bam unfiltered alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF017YSG, ENCFF643CGH, ENCFF691KWL 5752062261 ENCODE Processing Pipeline a7603dad8d708c703df03f48fce79240 https://www.encodeproject.org/files/ENCFF620RWC/@@download/ENCFF620RWC.bam GRCh38 released mild to moderate bottlenecking ENCFF600NPD bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF613WSV, ENCFF643CGH, ENCFF809EPG 5283441771 ENCODE Processing Pipeline e00d6ad304c7a8eff8ed1d0e9f7b0262 https://www.encodeproject.org/files/ENCFF600NPD/@@download/ENCFF600NPD.bam GRCh38 released mild to moderate bottlenecking ENCFF778ZCF bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF017YSG, ENCFF643CGH, ENCFF691KWL 4454197669 ENCODE Processing Pipeline d6c7ec81114d981aace0d737c84a91db https://www.encodeproject.org/files/ENCFF778ZCF/@@download/ENCFF778ZCF.bam GRCh38 released mild to moderate bottlenecking ENCFF966ASV bigWig signal p-value ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF488RJA, ENCFF600NPD, ENCFF778ZCF 1819079229 ENCODE Processing Pipeline 4476c0abbb789ba7ae155cf137e93708 https://www.encodeproject.org/files/ENCFF966ASV/@@download/ENCFF966ASV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF090AXX bigWig signal p-value ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF488RJA, ENCFF600NPD 1135601243 ENCODE Processing Pipeline efbda375e4d948fd56133e23e356957a https://www.encodeproject.org/files/ENCFF090AXX/@@download/ENCFF090AXX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF683BGC bigWig fold change over control ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF488RJA, ENCFF600NPD 1202423522 ENCODE Processing Pipeline 266a4b72a3432568a34abb5c73c00c64 https://www.encodeproject.org/files/ENCFF683BGC/@@download/ENCFF683BGC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF264YKP bigWig signal p-value ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF778ZCF 1134318917 ENCODE Processing Pipeline b205610d2a0edd50a1494ac3ccb524ed https://www.encodeproject.org/files/ENCFF264YKP/@@download/ENCFF264YKP.bigWig GRCh38 released mild to moderate bottlenecking ENCFF070GBV bigWig fold change over control ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF778ZCF 1083402233 ENCODE Processing Pipeline f29ed64a843207715ba794802b72e049 https://www.encodeproject.org/files/ENCFF070GBV/@@download/ENCFF070GBV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF886XRG bigWig fold change over control ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF488RJA, ENCFF600NPD, ENCFF778ZCF 2083041694 ENCODE Processing Pipeline c8948cf227a3a79783b2ab5515feddaa https://www.encodeproject.org/files/ENCFF886XRG/@@download/ENCFF886XRG.bigWig GRCh38 released mild to moderate bottlenecking ENCFF138FNX bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF488RJA, ENCFF600NPD, ENCFF778ZCF 6887031 ENCODE Processing Pipeline 653de59b7f8ab423e15dd42c4fe0dd3b https://www.encodeproject.org/files/ENCFF138FNX/@@download/ENCFF138FNX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF929KVZ bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF778ZCF 5580820 ENCODE Processing Pipeline 6919a35ab5ea09b6dd5816ce10d7c112 https://www.encodeproject.org/files/ENCFF929KVZ/@@download/ENCFF929KVZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF950CYO bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF488RJA, ENCFF600NPD 5864403 ENCODE Processing Pipeline b0542dff4f414e23255f64c4e09835ab https://www.encodeproject.org/files/ENCFF950CYO/@@download/ENCFF950CYO.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF475VGV bigBed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF950CYO 11139971 ENCODE Processing Pipeline 806ba87c786c5e5678c602608258752d https://www.encodeproject.org/files/ENCFF475VGV/@@download/ENCFF475VGV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF514ZNN bed narrowPeak optimal idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF138FNX, ENCFF419RSJ, ENCFF929KVZ, ENCFF950CYO 24540 ENCODE Processing Pipeline 144d5fe97c4047dcd12f4373090f9655 https://www.encodeproject.org/files/ENCFF514ZNN/@@download/ENCFF514ZNN.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF229UOO bed narrowPeak conservative idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF138FNX, ENCFF419RSJ, ENCFF929KVZ, ENCFF950CYO 16585 ENCODE Processing Pipeline 0605e470669039e3c5b6c2ac3e7f59bc https://www.encodeproject.org/files/ENCFF229UOO/@@download/ENCFF229UOO.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF644KVY bigBed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF929KVZ 11238426 ENCODE Processing Pipeline e650a1f86037997d2658eb3ee72b4490 https://www.encodeproject.org/files/ENCFF644KVY/@@download/ENCFF644KVY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF410QJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF229UOO 84038 ENCODE Processing Pipeline 5c7a9b10effd173ec80548feb046a847 https://www.encodeproject.org/files/ENCFF410QJZ/@@download/ENCFF410QJZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF119KOF bigBed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF138FNX 11021440 ENCODE Processing Pipeline 60075dd8ff297b96159510c1789bee3c https://www.encodeproject.org/files/ENCFF119KOF/@@download/ENCFF119KOF.bigBed GRCh38 released mild to moderate bottlenecking ENCFF487XHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF514ZNN 96982 ENCODE Processing Pipeline 91a19cf7acce40680781905ff1a48dae https://www.encodeproject.org/files/ENCFF487XHJ/@@download/ENCFF487XHJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF958CKL bigWig signal p-value ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF339ZHE, ENCFF760DHW 957654618 ENCODE Processing Pipeline 1b5fbe9549db3f321a6309c1c23d9f92 https://www.encodeproject.org/files/ENCFF958CKL/@@download/ENCFF958CKL.bigWig hg19 released mild to moderate bottlenecking ENCFF495LNW bigWig fold change over control ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF068ELI 1195434438 ENCODE Processing Pipeline 2b24fd93585e2f5d01a02e892a1970bb https://www.encodeproject.org/files/ENCFF495LNW/@@download/ENCFF495LNW.bigWig hg19 released mild to moderate bottlenecking ENCFF822XKR bigWig signal p-value ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF068ELI 1264545774 ENCODE Processing Pipeline 4478a59b938e445545452d026dd2c1c6 https://www.encodeproject.org/files/ENCFF822XKR/@@download/ENCFF822XKR.bigWig hg19 released mild to moderate bottlenecking ENCFF240OUS bigWig signal p-value ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF068ELI, ENCFF339ZHE, ENCFF760DHW 1640670453 ENCODE Processing Pipeline 4bbcc2cd6ad16add298c96e9be1e1eca https://www.encodeproject.org/files/ENCFF240OUS/@@download/ENCFF240OUS.bigWig hg19 released mild to moderate bottlenecking ENCFF970JNH bigWig fold change over control ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF339ZHE, ENCFF760DHW 1086219218 ENCODE Processing Pipeline 937fe8c3114b87d664b22c9e35c8c731 https://www.encodeproject.org/files/ENCFF970JNH/@@download/ENCFF970JNH.bigWig hg19 released mild to moderate bottlenecking ENCFF329TNA bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF068ELI 5866358 ENCODE Processing Pipeline 2912a7ff38987f563340dab91a2a0257 https://www.encodeproject.org/files/ENCFF329TNA/@@download/ENCFF329TNA.bed.gz hg19 released mild to moderate bottlenecking ENCFF146XEP bed narrowPeak optimal idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF288DTP, ENCFF329TNA, ENCFF893RQA 25374 ENCODE Processing Pipeline adde07d94f68bcd1be893e272c83d9a1 https://www.encodeproject.org/files/ENCFF146XEP/@@download/ENCFF146XEP.bed.gz hg19 released mild to moderate bottlenecking ENCFF045XCV bigWig fold change over control ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF068ELI, ENCFF339ZHE, ENCFF760DHW 2080761279 ENCODE Processing Pipeline 51987010117567d1398aea292083aad4 https://www.encodeproject.org/files/ENCFF045XCV/@@download/ENCFF045XCV.bigWig hg19 released mild to moderate bottlenecking ENCFF893RQA bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF068ELI, ENCFF339ZHE, ENCFF760DHW 6881728 ENCODE Processing Pipeline 6a09f5aac12d53a354ab99c33653ebe5 https://www.encodeproject.org/files/ENCFF893RQA/@@download/ENCFF893RQA.bed.gz hg19 released mild to moderate bottlenecking ENCFF229QXX bigBed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF288DTP 11220521 ENCODE Processing Pipeline 3f248ad4f7b8ba71429947f837821841 https://www.encodeproject.org/files/ENCFF229QXX/@@download/ENCFF229QXX.bigBed hg19 released mild to moderate bottlenecking ENCFF089IPJ bigBed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF893RQA 11010454 ENCODE Processing Pipeline 66f682b625328149a1aaef4b581efb53 https://www.encodeproject.org/files/ENCFF089IPJ/@@download/ENCFF089IPJ.bigBed hg19 released mild to moderate bottlenecking ENCFF288DTP bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF339ZHE, ENCFF760DHW 5578012 ENCODE Processing Pipeline 291feff4cc8a0ee10ea9aa18dc8d0ac7 https://www.encodeproject.org/files/ENCFF288DTP/@@download/ENCFF288DTP.bed.gz hg19 released mild to moderate bottlenecking ENCFF055ZRP bigBed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF329TNA 11124588 ENCODE Processing Pipeline f6d12b62ee271989005ca9c3fe055d4c https://www.encodeproject.org/files/ENCFF055ZRP/@@download/ENCFF055ZRP.bigBed hg19 released mild to moderate bottlenecking ENCFF914JZM bed narrowPeak conservative idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF288DTP, ENCFF329TNA, ENCFF893RQA 16138 ENCODE Processing Pipeline d1503bc89722a3a28e60e2815795cb92 https://www.encodeproject.org/files/ENCFF914JZM/@@download/ENCFF914JZM.bed.gz hg19 released mild to moderate bottlenecking ENCFF916GDS bigBed narrowPeak conservative idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF914JZM 82512 ENCODE Processing Pipeline 87d2db6a0b1e881bf1b40a2cdabe10f7 https://www.encodeproject.org/files/ENCFF916GDS/@@download/ENCFF916GDS.bigBed hg19 released mild to moderate bottlenecking ENCFF504LZL bigBed narrowPeak optimal idr thresholded peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF146XEP 97194 ENCODE Processing Pipeline 287f5b08a9f85bad8f8de49e9f6d7ed5 https://www.encodeproject.org/files/ENCFF504LZL/@@download/ENCFF504LZL.bigBed hg19 released mild to moderate bottlenecking ENCFF346MYJ fastq reads ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF223FTQ 4628430852 Michael Snyder, Stanford f76fd11d2fd200dca2d3bfc8e2e485a2 https://www.encodeproject.org/files/ENCFF346MYJ/@@download/ENCFF346MYJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF415UOP/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF223FTQ fastq reads ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF346MYJ 5150007395 Michael Snyder, Stanford c10cb828c2894605bc893e1543f5e4f0 https://www.encodeproject.org/files/ENCFF223FTQ/@@download/ENCFF223FTQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF353KTB/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF155CIR bam unfiltered alignments ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF223FTQ, ENCFF346MYJ, ENCFF643CGH 8162858788 ENCODE Processing Pipeline e6cc5abc9c04cae1512c0f02f846050e https://www.encodeproject.org/files/ENCFF155CIR/@@download/ENCFF155CIR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF297CZY bam unfiltered alignments ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF223FTQ, ENCFF346MYJ, ENCFF807MUK 8177036365 ENCODE Processing Pipeline 9de86c53c3dcdfb0009af83e07e340cc https://www.encodeproject.org/files/ENCFF297CZY/@@download/ENCFF297CZY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF777ZLD bam alignments ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF223FTQ, ENCFF346MYJ, ENCFF643CGH 3669128705 ENCODE Processing Pipeline 0675d354435ae27d01a7853120ed4d87 https://www.encodeproject.org/files/ENCFF777ZLD/@@download/ENCFF777ZLD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF355PVS bam alignments ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF223FTQ, ENCFF346MYJ, ENCFF807MUK 3658163389 ENCODE Processing Pipeline cb6cffa0abb6e7728be6910fe3fa77eb https://www.encodeproject.org/files/ENCFF355PVS/@@download/ENCFF355PVS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF117OQA bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF807MUK 866945015 ENCODE Processing Pipeline 1542e77b3521235468fe54d55c7c5071 https://www.encodeproject.org/files/ENCFF117OQA/@@download/ENCFF117OQA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF481YNF bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF807MUK 1152351065 ENCODE Processing Pipeline cf250a7bee1d9b82227d7c3b5c62be19 https://www.encodeproject.org/files/ENCFF481YNF/@@download/ENCFF481YNF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF613IHB bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF688WOB 10942664 ENCODE Processing Pipeline c852de144d93a0e77a6b0683f3cadf69 https://www.encodeproject.org/files/ENCFF613IHB/@@download/ENCFF613IHB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF878ZPT bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 5396705 ENCODE Processing Pipeline 99aadb727633a69d09b34588bf5f5923 https://www.encodeproject.org/files/ENCFF878ZPT/@@download/ENCFF878ZPT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF688WOB bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 4317244 ENCODE Processing Pipeline ca4086a0202c64d1ebea3c36c2a83996 https://www.encodeproject.org/files/ENCFF688WOB/@@download/ENCFF688WOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF191TQD bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3666893 ENCODE Processing Pipeline 1dbb0ee0b20c3bfca65897da6ddd66b2 https://www.encodeproject.org/files/ENCFF191TQD/@@download/ENCFF191TQD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF181YAD bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF191TQD 8150947 ENCODE Processing Pipeline 647b4a3224d6c9dda5911ec4a6a3e444 https://www.encodeproject.org/files/ENCFF181YAD/@@download/ENCFF181YAD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF298UPI bed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF191TQD, ENCFF688WOB, ENCFF878ZPT 28532 ENCODE Processing Pipeline c82f947c982c796763283fc21f4ad097 https://www.encodeproject.org/files/ENCFF298UPI/@@download/ENCFF298UPI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF947QEA bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF878ZPT 11549389 ENCODE Processing Pipeline 207510fac02df0e0ca02f77382472266 https://www.encodeproject.org/files/ENCFF947QEA/@@download/ENCFF947QEA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF791WCX bed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF191TQD, ENCFF688WOB, ENCFF878ZPT 18148 ENCODE Processing Pipeline c285a9bceb41e31fedc33fb964bf1484 https://www.encodeproject.org/files/ENCFF791WCX/@@download/ENCFF791WCX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF846HFA bigBed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF791WCX 73762 ENCODE Processing Pipeline 54b17b3eea6fc1ebca438400c95f265d https://www.encodeproject.org/files/ENCFF846HFA/@@download/ENCFF846HFA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF930SKY bigBed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF298UPI 104805 ENCODE Processing Pipeline 63418de95e4c39ba5da371e5feea07c7 https://www.encodeproject.org/files/ENCFF930SKY/@@download/ENCFF930SKY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EDB fastq reads ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 732930371 Michael Snyder, Stanford b841b981ba56bd8d0f6b06630c5c62eb SRA:SRR5111626 https://www.encodeproject.org/files/ENCFF002EDB/@@download/ENCFF002EDB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EDC fastq reads ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 953763669 Michael Snyder, Stanford 0b635a0b6aaad2e54cfdb900364f430d SRA:SRR5111625 https://www.encodeproject.org/files/ENCFF002EDC/@@download/ENCFF002EDC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF688XDE bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF807MUK 522494891 ENCODE Processing Pipeline 42f067dc855f6b99bda9cb57c48ae3e0 https://www.encodeproject.org/files/ENCFF688XDE/@@download/ENCFF688XDE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF370YOR bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF807MUK 783455395 ENCODE Processing Pipeline 4f469c02debe083f58593471e22d9853 https://www.encodeproject.org/files/ENCFF370YOR/@@download/ENCFF370YOR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF400IYT bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 507163589 ENCODE Processing Pipeline b50dc8efef33c96683cccc183b1429de https://www.encodeproject.org/files/ENCFF400IYT/@@download/ENCFF400IYT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF547UIH bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 533558000 ENCODE Processing Pipeline 5f5ad1f12242103fb748715238add84d https://www.encodeproject.org/files/ENCFF547UIH/@@download/ENCFF547UIH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF716SCW bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 819488233 ENCODE Processing Pipeline 90401cc2d8dedba28bb3d7c3867fdb9a https://www.encodeproject.org/files/ENCFF716SCW/@@download/ENCFF716SCW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF235EQL bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 415628285 ENCODE Processing Pipeline 06999945c5d148e973534f7a208801ba https://www.encodeproject.org/files/ENCFF235EQL/@@download/ENCFF235EQL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF832XNG bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 308616595 ENCODE Processing Pipeline f89d8402aa2891facfb546cba576a314 https://www.encodeproject.org/files/ENCFF832XNG/@@download/ENCFF832XNG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF127MEU bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 826071349 ENCODE Processing Pipeline 57007e44ebd101c3aeb4e20fa6b19aad https://www.encodeproject.org/files/ENCFF127MEU/@@download/ENCFF127MEU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF882ZXB bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF370YOR, ENCFF426WJH, ENCFF688XDE, ENCFF849LYY 5639989 ENCODE Processing Pipeline 79f408885f4e361cc1a0efb641fa0465 https://www.encodeproject.org/files/ENCFF882ZXB/@@download/ENCFF882ZXB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF157WOM bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF911LYM 11158215 ENCODE Processing Pipeline 1e63f5fa579c7246562e97400ecf46d8 https://www.encodeproject.org/files/ENCFF157WOM/@@download/ENCFF157WOM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF393HCV bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF830BYO 8398385 ENCODE Processing Pipeline 1725ce1792a517534ad0c36601d3b069 https://www.encodeproject.org/files/ENCFF393HCV/@@download/ENCFF393HCV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF911LYM bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 4521251 ENCODE Processing Pipeline d5130701e176e5988d36e1886b8008a0 https://www.encodeproject.org/files/ENCFF911LYM/@@download/ENCFF911LYM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF830BYO bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3770088 ENCODE Processing Pipeline fe9c7b6828ab89faf53c0114b285c86b https://www.encodeproject.org/files/ENCFF830BYO/@@download/ENCFF830BYO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF348PVD bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF882ZXB 11593028 ENCODE Processing Pipeline 3dbc4d5feacc9d1c6c904f0117867584 https://www.encodeproject.org/files/ENCFF348PVD/@@download/ENCFF348PVD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF390GUF bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF643CGH 868807661 ENCODE Processing Pipeline 438d7fb7a17bf47411a7b7e4f0b73937 https://www.encodeproject.org/files/ENCFF390GUF/@@download/ENCFF390GUF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF033TCK bam unfiltered alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF643CGH 1155210937 ENCODE Processing Pipeline 0755c23be08aa50ff83e7f57440b51dd https://www.encodeproject.org/files/ENCFF033TCK/@@download/ENCFF033TCK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF396GSL bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF643CGH 522450414 ENCODE Processing Pipeline e58d6951401674cd52447625be791fd2 https://www.encodeproject.org/files/ENCFF396GSL/@@download/ENCFF396GSL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF898VJT bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF643CGH 783900089 ENCODE Processing Pipeline 8bd9b2db923a1e2f1e0db4d530180527 https://www.encodeproject.org/files/ENCFF898VJT/@@download/ENCFF898VJT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF255SBJ bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF872ERZ, ENCFF898VJT 4080894 ENCODE Processing Pipeline 0e292baeb46507c15b06241013acafaf https://www.encodeproject.org/files/ENCFF255SBJ/@@download/ENCFF255SBJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF405XEK bed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF041BSX, ENCFF255SBJ, ENCFF419RSJ, ENCFF437EFE 18757 ENCODE Processing Pipeline 61309e08a5289f59db64aa51691bdd2d https://www.encodeproject.org/files/ENCFF405XEK/@@download/ENCFF405XEK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF069GIR bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF396GSL, ENCFF872ERZ, ENCFF898VJT 820210627 ENCODE Processing Pipeline f095fdf4f90b5bfa43fde0ace9335871 https://www.encodeproject.org/files/ENCFF069GIR/@@download/ENCFF069GIR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF238DAU bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF872ERZ, ENCFF898VJT 428295478 ENCODE Processing Pipeline a225848b02d9a22c61cbd29e281d9419 https://www.encodeproject.org/files/ENCFF238DAU/@@download/ENCFF238DAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF404UZJ bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF396GSL 311349171 ENCODE Processing Pipeline c82bdd6bcb67cf14955a921792eaa060 https://www.encodeproject.org/files/ENCFF404UZJ/@@download/ENCFF404UZJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF628NVL bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF872ERZ, ENCFF898VJT 500033421 ENCODE Processing Pipeline d0542ac8db4fb44703f4d36f4a07f2e5 https://www.encodeproject.org/files/ENCFF628NVL/@@download/ENCFF628NVL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF151LGF bigWig fold change over control ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF396GSL, ENCFF872ERZ, ENCFF898VJT 851100916 ENCODE Processing Pipeline 4a311aec80acd8bf6026ed4419633405 https://www.encodeproject.org/files/ENCFF151LGF/@@download/ENCFF151LGF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF124ZNT bigWig signal p-value ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF396GSL 492409328 ENCODE Processing Pipeline 15deb89e7f0d80d6a6d63c807a2a281e https://www.encodeproject.org/files/ENCFF124ZNT/@@download/ENCFF124ZNT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF437EFE bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF396GSL 3714948 ENCODE Processing Pipeline 0de295eb5b0cb924e8b8126429be8b62 https://www.encodeproject.org/files/ENCFF437EFE/@@download/ENCFF437EFE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF520HKL bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF041BSX 11510030 ENCODE Processing Pipeline 822588ffaf0b08d1a8dcfe7461caf189 https://www.encodeproject.org/files/ENCFF520HKL/@@download/ENCFF520HKL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF041BSX bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF396GSL, ENCFF872ERZ, ENCFF898VJT 5002995 ENCODE Processing Pipeline 2b0dd988dc15c50fea8beb40f7aafb60 https://www.encodeproject.org/files/ENCFF041BSX/@@download/ENCFF041BSX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF793EJG bigBed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF405XEK 75844 ENCODE Processing Pipeline c4bf00b4e981515d8a659848d4d8fe96 https://www.encodeproject.org/files/ENCFF793EJG/@@download/ENCFF793EJG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF295ZLM bed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF041BSX, ENCFF255SBJ, ENCFF419RSJ, ENCFF437EFE 25004 ENCODE Processing Pipeline 965aa86a8a223ee6b88bc0af9d70ad12 https://www.encodeproject.org/files/ENCFF295ZLM/@@download/ENCFF295ZLM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF671MXW bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF255SBJ 10798163 ENCODE Processing Pipeline 14f131fb321236a0193de85ef0cdf71b https://www.encodeproject.org/files/ENCFF671MXW/@@download/ENCFF671MXW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF572SVT bigBed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF437EFE 8257343 ENCODE Processing Pipeline b52f978a86b90f2d302913f7c53e5372 https://www.encodeproject.org/files/ENCFF572SVT/@@download/ENCFF572SVT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF184JCC bigBed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295ZLM 84671 ENCODE Processing Pipeline a105a66cee06cc1654acb31df6119b96 https://www.encodeproject.org/files/ENCFF184JCC/@@download/ENCFF184JCC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF754GFB bigBed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF745TNJ 79176 ENCODE Processing Pipeline f7ebd722c235c9a0be5cef1a4104114a https://www.encodeproject.org/files/ENCFF754GFB/@@download/ENCFF754GFB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF499CTR bed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF830BYO, ENCFF882ZXB, ENCFF911LYM 15112 ENCODE Processing Pipeline b108c317673dec9960139af499b92dbe https://www.encodeproject.org/files/ENCFF499CTR/@@download/ENCFF499CTR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF802EUE bigBed narrowPeak conservative idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF499CTR 69889 ENCODE Processing Pipeline 4930714fcf8b551a54544060d77d1f48 https://www.encodeproject.org/files/ENCFF802EUE/@@download/ENCFF802EUE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF745TNJ bed narrowPeak optimal idr thresholded peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF830BYO, ENCFF882ZXB, ENCFF911LYM 21700 ENCODE Processing Pipeline 39ff0a17cad317e0bf09d204c549746b https://www.encodeproject.org/files/ENCFF745TNJ/@@download/ENCFF745TNJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF390IPW fastq reads ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF645XVN 2972402055 Michael Snyder, Stanford deefc539593141bc4f64bc093be0545d SRA:SRR6213544 https://www.encodeproject.org/files/ENCFF390IPW/@@download/ENCFF390IPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF645XVN fastq reads ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF390IPW 3022952536 Michael Snyder, Stanford c3201e1c638f19b701b9b2bf17162e34 SRA:SRR6213544 https://www.encodeproject.org/files/ENCFF645XVN/@@download/ENCFF645XVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF515XEA fastq reads ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF167QBT 3273671458 Michael Snyder, Stanford cfb565a88c06d732c42e0963e6525880 SRA:SRR6213543 https://www.encodeproject.org/files/ENCFF515XEA/@@download/ENCFF515XEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF167QBT fastq reads ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF515XEA 3210338038 Michael Snyder, Stanford 2595d0cb097cd80d221ccb755f5fc801 SRA:SRR6213543 https://www.encodeproject.org/files/ENCFF167QBT/@@download/ENCFF167QBT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF640JAP bam unfiltered alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF390IPW, ENCFF645XVN, ENCFF807MUK 6083816778 ENCODE Processing Pipeline 9b75c1a655ef1c3b209dc0fafe89e939 https://www.encodeproject.org/files/ENCFF640JAP/@@download/ENCFF640JAP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF765AHP bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF390IPW, ENCFF645XVN, ENCFF807MUK 5137447333 ENCODE Processing Pipeline 0a53d0da34f88967fce6ed0eff06a66a https://www.encodeproject.org/files/ENCFF765AHP/@@download/ENCFF765AHP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF459JEN bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF390IPW, ENCFF643CGH, ENCFF645XVN 5140656926 ENCODE Processing Pipeline 7df111287bb629b5255a75cf814619e4 https://www.encodeproject.org/files/ENCFF459JEN/@@download/ENCFF459JEN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF761HBW bam unfiltered alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF390IPW, ENCFF643CGH, ENCFF645XVN 6093155345 ENCODE Processing Pipeline 39e03cf1b1103ee87fb637f0ed3cb751 https://www.encodeproject.org/files/ENCFF761HBW/@@download/ENCFF761HBW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF603KKZ bam unfiltered alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF167QBT, ENCFF515XEA, ENCFF807MUK 6548029789 ENCODE Processing Pipeline 11a0b15d35d8f07d76c1281dae27f412 https://www.encodeproject.org/files/ENCFF603KKZ/@@download/ENCFF603KKZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF254ZCH bam unfiltered alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF167QBT, ENCFF515XEA, ENCFF643CGH 6558397430 ENCODE Processing Pipeline 6a2a7a1330f63f2ffada0236f0fd0e69 https://www.encodeproject.org/files/ENCFF254ZCH/@@download/ENCFF254ZCH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF837OHG bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF167QBT, ENCFF515XEA, ENCFF643CGH 5536356545 ENCODE Processing Pipeline 4f906a85317d405f617df464f6df01a4 https://www.encodeproject.org/files/ENCFF837OHG/@@download/ENCFF837OHG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF371EAK bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF167QBT, ENCFF515XEA, ENCFF807MUK 5532522782 ENCODE Processing Pipeline bac455ddab50e19712808c7437f2f801 https://www.encodeproject.org/files/ENCFF371EAK/@@download/ENCFF371EAK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF129EDN bigWig signal p-value ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF459JEN 1420420493 ENCODE Processing Pipeline 0902b151877cd62946618a2db91c1721 https://www.encodeproject.org/files/ENCFF129EDN/@@download/ENCFF129EDN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF918QTU bigWig signal p-value ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF765AHP 1245345700 ENCODE Processing Pipeline d05f737a81910fbc23f6de625875216a https://www.encodeproject.org/files/ENCFF918QTU/@@download/ENCFF918QTU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF882MLY bigWig signal p-value ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF837OHG 1490146836 ENCODE Processing Pipeline 78287d11fba6998007c23b4018bd1317 https://www.encodeproject.org/files/ENCFF882MLY/@@download/ENCFF882MLY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF010DHX bigWig signal p-value ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF371EAK 1252965742 ENCODE Processing Pipeline cae75c3d9dbcb92b74ecfcb755685e5e https://www.encodeproject.org/files/ENCFF010DHX/@@download/ENCFF010DHX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF067KSB bigWig signal p-value ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF459JEN, ENCFF837OHG 2002778879 ENCODE Processing Pipeline 0c2938a467899f84c5bf2744d05265b8 https://www.encodeproject.org/files/ENCFF067KSB/@@download/ENCFF067KSB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF247BNJ bigWig fold change over control ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF459JEN 1474383103 ENCODE Processing Pipeline d1c2486bd2200f005fdc208f09ce7bf7 https://www.encodeproject.org/files/ENCFF247BNJ/@@download/ENCFF247BNJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF004KKE bigWig fold change over control ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF837OHG 1533992413 ENCODE Processing Pipeline 8f0471be969a510091fa8fe5cbf3a491 https://www.encodeproject.org/files/ENCFF004KKE/@@download/ENCFF004KKE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF688LGQ bigWig signal p-value ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF371EAK, ENCFF765AHP 1993597594 ENCODE Processing Pipeline fc325adb2d6e38d478565a8f07a2821c https://www.encodeproject.org/files/ENCFF688LGQ/@@download/ENCFF688LGQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF016ETA bigWig fold change over control ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF765AHP 1434315123 ENCODE Processing Pipeline 3bb1fc7270486d8f9604c6bb5d0c30ab https://www.encodeproject.org/files/ENCFF016ETA/@@download/ENCFF016ETA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF351UNN bigWig fold change over control ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF371EAK 1547547869 ENCODE Processing Pipeline 5227fcdd38af4fe53701dd378d371262 https://www.encodeproject.org/files/ENCFF351UNN/@@download/ENCFF351UNN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF037GZN bigWig fold change over control ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF459JEN, ENCFF837OHG 2105886451 ENCODE Processing Pipeline 6447e630e8027ba56279af8741e69bbd https://www.encodeproject.org/files/ENCFF037GZN/@@download/ENCFF037GZN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF905EEB bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF837OHG 6820883 ENCODE Processing Pipeline df6e36fef295ddd98490fb78ccf930c2 https://www.encodeproject.org/files/ENCFF905EEB/@@download/ENCFF905EEB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF629EJP bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF459JEN, ENCFF837OHG 7152395 ENCODE Processing Pipeline 0fb583a1a3f2a779723d22147508113a https://www.encodeproject.org/files/ENCFF629EJP/@@download/ENCFF629EJP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF227DKJ bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF459JEN 6558008 ENCODE Processing Pipeline e57df000c9ef9e689e6aa6fd6d0587f2 https://www.encodeproject.org/files/ENCFF227DKJ/@@download/ENCFF227DKJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF587WJD bigBed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF227DKJ 11115657 ENCODE Processing Pipeline 10eff8e0cdcf12627aa6dddd17b806eb https://www.encodeproject.org/files/ENCFF587WJD/@@download/ENCFF587WJD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF543DFA bigWig fold change over control ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF371EAK, ENCFF765AHP 2091656787 ENCODE Processing Pipeline 7c56ce1e29b805a7c5b6b6e700373eae https://www.encodeproject.org/files/ENCFF543DFA/@@download/ENCFF543DFA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF636SNN bigBed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF905EEB 11084233 ENCODE Processing Pipeline 12640259eaca4bd281ddb1a969017064 https://www.encodeproject.org/files/ENCFF636SNN/@@download/ENCFF636SNN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF920LAF bed narrowPeak conservative idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF227DKJ, ENCFF419RSJ, ENCFF629EJP, ENCFF905EEB 40947 ENCODE Processing Pipeline b42f5b61b84a685ce085772242f3bb2d https://www.encodeproject.org/files/ENCFF920LAF/@@download/ENCFF920LAF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF496HNN bigBed narrowPeak conservative idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF920LAF 138653 ENCODE Processing Pipeline 8e175ccb3c0bc6c4397b28ab15e9ee09 https://www.encodeproject.org/files/ENCFF496HNN/@@download/ENCFF496HNN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF968KVL bigBed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF629EJP 13063740 ENCODE Processing Pipeline c46e75eaa3d9a7bf927f3cf0d5fb4382 https://www.encodeproject.org/files/ENCFF968KVL/@@download/ENCFF968KVL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF411VUK bigBed narrowPeak optimal idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF236ZPP 169430 ENCODE Processing Pipeline f961660a4092c28ffbf0b0774f70e36f https://www.encodeproject.org/files/ENCFF411VUK/@@download/ENCFF411VUK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF236ZPP bed narrowPeak optimal idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF227DKJ, ENCFF419RSJ, ENCFF629EJP, ENCFF905EEB 59884 ENCODE Processing Pipeline a676121c8fdd32c58e7ac3c8eff94548 https://www.encodeproject.org/files/ENCFF236ZPP/@@download/ENCFF236ZPP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF167FGN bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF765AHP 6609936 ENCODE Processing Pipeline 91d9fa671d6d25c25e10d98022bd9926 https://www.encodeproject.org/files/ENCFF167FGN/@@download/ENCFF167FGN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF547CJU bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF371EAK 6818854 ENCODE Processing Pipeline c8f00a747bb5440770fecf1882eb97d0 https://www.encodeproject.org/files/ENCFF547CJU/@@download/ENCFF547CJU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF803XKZ bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF371EAK, ENCFF765AHP 7145147 ENCODE Processing Pipeline 2b632e018e196001b935219739b4d178 https://www.encodeproject.org/files/ENCFF803XKZ/@@download/ENCFF803XKZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF840XCA bigBed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF803XKZ 13050674 ENCODE Processing Pipeline f698898fbeb6f08173e76bd81aca6edf https://www.encodeproject.org/files/ENCFF840XCA/@@download/ENCFF840XCA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF580JTN bigBed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF167FGN 11100491 ENCODE Processing Pipeline 6e286da9c66cb3224017ecb6ec2110e7 https://www.encodeproject.org/files/ENCFF580JTN/@@download/ENCFF580JTN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF166UNI bed narrowPeak conservative idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF167FGN, ENCFF547CJU, ENCFF803XKZ 40103 ENCODE Processing Pipeline f69531bd803f4ff1725487bf28376c23 https://www.encodeproject.org/files/ENCFF166UNI/@@download/ENCFF166UNI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF133QFU bigBed narrowPeak conservative idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF166UNI 135070 ENCODE Processing Pipeline 38f055a9fa17136e77e0bce66da2c411 https://www.encodeproject.org/files/ENCFF133QFU/@@download/ENCFF133QFU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF520EUT bed narrowPeak optimal idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF167FGN, ENCFF547CJU, ENCFF803XKZ 58845 ENCODE Processing Pipeline d7873795b46c607c8403d8f8a40cb204 https://www.encodeproject.org/files/ENCFF520EUT/@@download/ENCFF520EUT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF489MSW bigBed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF547CJU 11069991 ENCODE Processing Pipeline d641f11cf425dc5a6b57b1b45965903c https://www.encodeproject.org/files/ENCFF489MSW/@@download/ENCFF489MSW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF021LWG bigBed narrowPeak optimal idr thresholded peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF520EUT 165273 ENCODE Processing Pipeline 841502c729c0b9deae24b92a44c47dcb https://www.encodeproject.org/files/ENCFF021LWG/@@download/ENCFF021LWG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF377HIA bam unfiltered alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMI, ENCFF002EMK, ENCFF807MUK 7989576118 ENCODE Processing Pipeline c48f16d7913285b9f1aff620d3fe2ffb https://www.encodeproject.org/files/ENCFF377HIA/@@download/ENCFF377HIA.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF517EYF bam unfiltered alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EME, ENCFF002EMH, ENCFF807MUK 7217855411 ENCODE Processing Pipeline 3e68ae028aa3c40b7be312e3a0873c65 https://www.encodeproject.org/files/ENCFF517EYF/@@download/ENCFF517EYF.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF888XVS bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF425GKU, ENCFF806YIH 1192406121 ENCODE Processing Pipeline 82e6e9aa411b73aefc67f77ad68e488c https://www.encodeproject.org/files/ENCFF888XVS/@@download/ENCFF888XVS.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF002EME fastq reads ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EMH 3317890547 Michael Snyder, Stanford 0f55f096e4b439f274bc897110991d5e SRA:SRR5112244 https://www.encodeproject.org/files/ENCFF002EME/@@download/ENCFF002EME.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released borderline replicate concordance, antibody characterized with exemption ENCFF002EMH fastq reads ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EME 3348054597 Michael Snyder, Stanford 7fc471b2bf42d45125e07262994c5334 SRA:SRR5112244 https://www.encodeproject.org/files/ENCFF002EMH/@@download/ENCFF002EMH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released borderline replicate concordance, antibody characterized with exemption ENCFF002EMI fastq reads ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EMK 3688521976 Michael Snyder, Stanford 65d1138ebd666e754b59418f065d46ee SRA:SRR5112243 https://www.encodeproject.org/files/ENCFF002EMI/@@download/ENCFF002EMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released borderline replicate concordance, antibody characterized with exemption ENCFF002EMK fastq reads ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EMI 3706146592 Michael Snyder, Stanford acae3e7be31703203b1bf6187e5fb193 SRA:SRR5112243 https://www.encodeproject.org/files/ENCFF002EMK/@@download/ENCFF002EMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released borderline replicate concordance, antibody characterized with exemption ENCFF517OLT bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF061MPQ, ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 2141956223 ENCODE Processing Pipeline a2479f90df40a10bd6a6d97c894ef9f5 https://www.encodeproject.org/files/ENCFF517OLT/@@download/ENCFF517OLT.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF572NZX bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF425GKU, ENCFF806YIH 1432736255 ENCODE Processing Pipeline 4ab13bbbad384fcf83e9b6d843e7596f https://www.encodeproject.org/files/ENCFF572NZX/@@download/ENCFF572NZX.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF481QRK bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF061MPQ, ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 2414885413 ENCODE Processing Pipeline d957361c4577d9640ace3d91be220b8c https://www.encodeproject.org/files/ENCFF481QRK/@@download/ENCFF481QRK.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF290WHA bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 6795268 ENCODE Processing Pipeline 03d4b77c9f3bbca774662f96b3ff8334 https://www.encodeproject.org/files/ENCFF290WHA/@@download/ENCFF290WHA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF491WEZ bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF425GKU, ENCFF806YIH 6242500 ENCODE Processing Pipeline 9a2cc44838e21290aa0e7eb9f2a67811 https://www.encodeproject.org/files/ENCFF491WEZ/@@download/ENCFF491WEZ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF567CHJ bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF926IPE 11208896 ENCODE Processing Pipeline 5150f35758fffef810d8fbf2d004edcf https://www.encodeproject.org/files/ENCFF567CHJ/@@download/ENCFF567CHJ.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF926IPE bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF061MPQ, ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 7231597 ENCODE Processing Pipeline b3b99652e0051893c465066b31ddc63e https://www.encodeproject.org/files/ENCFF926IPE/@@download/ENCFF926IPE.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF551HLS bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF290WHA 11203082 ENCODE Processing Pipeline d30751b8eed86bb8ff8d1ff4c990155b https://www.encodeproject.org/files/ENCFF551HLS/@@download/ENCFF551HLS.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF864SRG bigBed narrowPeak conservative idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF732YAK 103948 ENCODE Processing Pipeline 45628544bcf20ef76a1047bf29db6479 https://www.encodeproject.org/files/ENCFF864SRG/@@download/ENCFF864SRG.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF131ACH bigBed narrowPeak optimal idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF315VQM 191968 ENCODE Processing Pipeline fb025dc80477afc3b020e19cd0a02e6e https://www.encodeproject.org/files/ENCFF131ACH/@@download/ENCFF131ACH.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF679BAW bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF491WEZ 11236432 ENCODE Processing Pipeline 2b118c6c4311c598a3188658f502d815 https://www.encodeproject.org/files/ENCFF679BAW/@@download/ENCFF679BAW.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF732YAK bed narrowPeak conservative idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF290WHA, ENCFF491WEZ, ENCFF926IPE 28338 ENCODE Processing Pipeline 25079afa7098b7acd9b1676530f21980 https://www.encodeproject.org/files/ENCFF732YAK/@@download/ENCFF732YAK.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF315VQM bed narrowPeak optimal idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF290WHA, ENCFF491WEZ, ENCFF926IPE 68730 ENCODE Processing Pipeline 52c030c2d14a1c8c5aff2675d1e82050 https://www.encodeproject.org/files/ENCFF315VQM/@@download/ENCFF315VQM.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF061MPQ bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EME, ENCFF002EMH, ENCFF807MUK 6208290542 ENCODE Processing Pipeline b6d60e7bc33af6dc7b3f2f955b7dc65d https://www.encodeproject.org/files/ENCFF061MPQ/@@download/ENCFF061MPQ.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF425GKU bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMI, ENCFF002EMK, ENCFF807MUK 6941929400 ENCODE Processing Pipeline 0f0ae01933dce6b4aab1f2661b561539 https://www.encodeproject.org/files/ENCFF425GKU/@@download/ENCFF425GKU.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF874ZMC bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 1641125120 ENCODE Processing Pipeline bd052066bb1e2474d795c7769c342190 https://www.encodeproject.org/files/ENCFF874ZMC/@@download/ENCFF874ZMC.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF983ZQZ bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 1614911709 ENCODE Processing Pipeline 40c12c7b14b09e51f297c258925934be https://www.encodeproject.org/files/ENCFF983ZQZ/@@download/ENCFF983ZQZ.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF438SSC bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF061MPQ, ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 2116697168 ENCODE Processing Pipeline ad31da08fe33601a9dbe8dfd9b4bccbe https://www.encodeproject.org/files/ENCFF438SSC/@@download/ENCFF438SSC.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF928GSV bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 1759994259 ENCODE Processing Pipeline da237355ae01e019227d1e5a1ae86140 https://www.encodeproject.org/files/ENCFF928GSV/@@download/ENCFF928GSV.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF280FPS bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 1855761376 ENCODE Processing Pipeline 60700a57ea118df2738b6e2f980e3070 https://www.encodeproject.org/files/ENCFF280FPS/@@download/ENCFF280FPS.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF776JUB bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF061MPQ, ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 2386417563 ENCODE Processing Pipeline a622fd8d673f918e97f71d9a5b1abb49 https://www.encodeproject.org/files/ENCFF776JUB/@@download/ENCFF776JUB.bigWig hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF110VMS bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 6904209 ENCODE Processing Pipeline cca853464852b01e18ceb73ff9c13383 https://www.encodeproject.org/files/ENCFF110VMS/@@download/ENCFF110VMS.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF106NTS bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 6793480 ENCODE Processing Pipeline e8e112a20a4c0caba99f1e3fe9a21f20 https://www.encodeproject.org/files/ENCFF106NTS/@@download/ENCFF106NTS.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF879ACW bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF705UHV 11209902 ENCODE Processing Pipeline b489d942b512bfad57d277c33cd74906 https://www.encodeproject.org/files/ENCFF879ACW/@@download/ENCFF879ACW.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF705UHV bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF061MPQ, ENCFF321TUP, ENCFF425GKU, ENCFF806YIH 7253919 ENCODE Processing Pipeline edb58ebae2b7d74d257bf485b8e36de4 https://www.encodeproject.org/files/ENCFF705UHV/@@download/ENCFF705UHV.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF124AHO bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF110VMS 11205057 ENCODE Processing Pipeline 4507c6852d98e2eee53926e1525fc58a https://www.encodeproject.org/files/ENCFF124AHO/@@download/ENCFF124AHO.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF918MVQ bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF106NTS 11342034 ENCODE Processing Pipeline 99714257a2ed88239214655e713b9ae7 https://www.encodeproject.org/files/ENCFF918MVQ/@@download/ENCFF918MVQ.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF751XYE bam unfiltered alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EME, ENCFF002EMH, ENCFF643CGH 7230969360 ENCODE Processing Pipeline 998c4c52b6b791ab8017334e8dd4849c https://www.encodeproject.org/files/ENCFF751XYE/@@download/ENCFF751XYE.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF979FRI bam unfiltered alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMI, ENCFF002EMK, ENCFF643CGH 8005914869 ENCODE Processing Pipeline 81a72cb02ce57f9cfdc3584819fe058c https://www.encodeproject.org/files/ENCFF979FRI/@@download/ENCFF979FRI.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF788IFN bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EME, ENCFF002EMH, ENCFF643CGH 6216387451 ENCODE Processing Pipeline 8c8124d093d66edcc9c319cd2defc9bb https://www.encodeproject.org/files/ENCFF788IFN/@@download/ENCFF788IFN.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF224BFU bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMI, ENCFF002EMK, ENCFF643CGH 6952257157 ENCODE Processing Pipeline 963f1d263ab581902c394ccfebd1c293 https://www.encodeproject.org/files/ENCFF224BFU/@@download/ENCFF224BFU.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF706NHK bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF788IFN 1738262431 ENCODE Processing Pipeline d215f89f0adda8091217d8f1eefd4ba2 https://www.encodeproject.org/files/ENCFF706NHK/@@download/ENCFF706NHK.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF906JUT bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF224BFU, ENCFF419UIG 1200209057 ENCODE Processing Pipeline 37ab011101ff605b4ce2a63bb1693361 https://www.encodeproject.org/files/ENCFF906JUT/@@download/ENCFF906JUT.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF276DMP bigWig signal p-value ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF224BFU, ENCFF419UIG, ENCFF788IFN 2147053421 ENCODE Processing Pipeline ffedbb6145fffe0c3fd37c114e13c3dd https://www.encodeproject.org/files/ENCFF276DMP/@@download/ENCFF276DMP.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF829OSK bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF788IFN 1758158661 ENCODE Processing Pipeline 3bfb869cec1eb1e03c3660af0c4798a6 https://www.encodeproject.org/files/ENCFF829OSK/@@download/ENCFF829OSK.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF415QGX bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF224BFU, ENCFF419UIG 1437043153 ENCODE Processing Pipeline deeddf22a48e980f5b889a43074217ef https://www.encodeproject.org/files/ENCFF415QGX/@@download/ENCFF415QGX.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF238ACS bigWig fold change over control ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF224BFU, ENCFF419UIG, ENCFF788IFN 2421029864 ENCODE Processing Pipeline adbf8ef7253134062855773523978422 https://www.encodeproject.org/files/ENCFF238ACS/@@download/ENCFF238ACS.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF795RCO bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF224BFU, ENCFF419UIG 6246121 ENCODE Processing Pipeline 2896fea1fa914c1cc1bf41ff43e102bd https://www.encodeproject.org/files/ENCFF795RCO/@@download/ENCFF795RCO.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF140YPC bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 ENCFF795RCO 11252140 ENCODE Processing Pipeline a9eb7598efbadae78443f075150a2a29 https://www.encodeproject.org/files/ENCFF140YPC/@@download/ENCFF140YPC.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF264KUD bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF224BFU, ENCFF419UIG, ENCFF788IFN 7236151 ENCODE Processing Pipeline 4f9f8d816d20b91195c845620213118a https://www.encodeproject.org/files/ENCFF264KUD/@@download/ENCFF264KUD.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF672MKP bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF788IFN 6800955 ENCODE Processing Pipeline 3b83209f2fc3ccbbe97e4c2c8a35688f https://www.encodeproject.org/files/ENCFF672MKP/@@download/ENCFF672MKP.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF735LGE bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF672MKP 11219633 ENCODE Processing Pipeline 46af3edefb1b5464300704cb2caf76b9 https://www.encodeproject.org/files/ENCFF735LGE/@@download/ENCFF735LGE.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF624DDK bed narrowPeak optimal idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF264KUD, ENCFF419RSJ, ENCFF672MKP, ENCFF795RCO 65714 ENCODE Processing Pipeline 7fb452d7b287acf8a1ca4d7ec783e7c2 https://www.encodeproject.org/files/ENCFF624DDK/@@download/ENCFF624DDK.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF353XJI bigBed narrowPeak optimal idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF624DDK 188987 ENCODE Processing Pipeline f1c2c6d18987c26f92f5b132dbae5831 https://www.encodeproject.org/files/ENCFF353XJI/@@download/ENCFF353XJI.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF715VYG bigBed narrowPeak conservative idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF883YQO 104311 ENCODE Processing Pipeline dddb27b546847f94362f4404745c78a0 https://www.encodeproject.org/files/ENCFF715VYG/@@download/ENCFF715VYG.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF373XPO bigBed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF264KUD 11222877 ENCODE Processing Pipeline 00069abf82d7cb6ac99e4c56bab39b1a https://www.encodeproject.org/files/ENCFF373XPO/@@download/ENCFF373XPO.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF883YQO bed narrowPeak conservative idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF264KUD, ENCFF419RSJ, ENCFF672MKP, ENCFF795RCO 27834 ENCODE Processing Pipeline 733e4cab423ce6f8353a4bb9112d9f0f https://www.encodeproject.org/files/ENCFF883YQO/@@download/ENCFF883YQO.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF867MDW bed narrowPeak optimal idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF106NTS, ENCFF110VMS, ENCFF705UHV 56334 ENCODE Processing Pipeline c3b9d02af760fd071247afc5a6bbaae8 https://www.encodeproject.org/files/ENCFF867MDW/@@download/ENCFF867MDW.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF944MHD bed narrowPeak conservative idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF106NTS, ENCFF110VMS, ENCFF705UHV 25653 ENCODE Processing Pipeline 021fb17a8cc5a0e840b7012a1d15556d https://www.encodeproject.org/files/ENCFF944MHD/@@download/ENCFF944MHD.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF637QTZ bigBed narrowPeak optimal idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF867MDW 144709 ENCODE Processing Pipeline 1ea61487b4a008f37ba85bb1359f0c17 https://www.encodeproject.org/files/ENCFF637QTZ/@@download/ENCFF637QTZ.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF903VLY bigBed narrowPeak conservative idr thresholded peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF944MHD 83240 ENCODE Processing Pipeline 233927860f7b823473e141458870b1ea https://www.encodeproject.org/files/ENCFF903VLY/@@download/ENCFF903VLY.bigBed hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF901AEL fastq reads ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 1 ENCFF181KEE 2561719829 Michael Snyder, Stanford 78f5d38ce94dbb8ac3e5000beabbacb2 SRA:SRR6213633 https://www.encodeproject.org/files/ENCFF901AEL/@@download/ENCFF901AEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF181KEE fastq reads ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 2 ENCFF901AEL 2657608827 Michael Snyder, Stanford bfd924e327aa58564fbb4dc7da21a830 SRA:SRR6213633 https://www.encodeproject.org/files/ENCFF181KEE/@@download/ENCFF181KEE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF823NJA bam unfiltered alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF181KEE, ENCFF643CGH, ENCFF901AEL 5786250068 ENCODE Processing Pipeline 6aceb0da786fbb51dee0fa60b2ee84c7 https://www.encodeproject.org/files/ENCFF823NJA/@@download/ENCFF823NJA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF413CGN bam unfiltered alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF181KEE, ENCFF807MUK, ENCFF901AEL 5777915682 ENCODE Processing Pipeline 7180308e5272cabe77bbd35508e55e67 https://www.encodeproject.org/files/ENCFF413CGN/@@download/ENCFF413CGN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF393EHE bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF181KEE, ENCFF643CGH, ENCFF901AEL 5013755941 ENCODE Processing Pipeline 099c368dbb3f42892ed451986321e26f https://www.encodeproject.org/files/ENCFF393EHE/@@download/ENCFF393EHE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF679QQL bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF181KEE, ENCFF807MUK, ENCFF901AEL 5009877886 ENCODE Processing Pipeline c99b2b20988dbaa239279e36813ae3d6 https://www.encodeproject.org/files/ENCFF679QQL/@@download/ENCFF679QQL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF500SQZ bigWig fold change over control ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF393EHE 1496090290 ENCODE Processing Pipeline 50d2e78166686e53e1495052e859ab52 https://www.encodeproject.org/files/ENCFF500SQZ/@@download/ENCFF500SQZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF291CYZ bigWig signal p-value ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF393EHE 1259172412 ENCODE Processing Pipeline 2a5ba6758635fa0bbc5fb57672071aed https://www.encodeproject.org/files/ENCFF291CYZ/@@download/ENCFF291CYZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF922FVV bigBed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF857BZM 11159150 ENCODE Processing Pipeline e9a711c8992a0792d99748fe1c9499c6 https://www.encodeproject.org/files/ENCFF922FVV/@@download/ENCFF922FVV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF857BZM bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF393EHE 6293156 ENCODE Processing Pipeline 80ef4efd18ab4479eb7060fe0a4f5f93 https://www.encodeproject.org/files/ENCFF857BZM/@@download/ENCFF857BZM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF075NLI fastq reads ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 1 101 paired-ended 1 ENCFF705CNE 2933543426 Michael Snyder, Stanford f6be2eac02b8df0f8682380080d42a0a SRA:SRR6213632 https://www.encodeproject.org/files/ENCFF075NLI/@@download/ENCFF075NLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF705CNE fastq reads ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 1 101 paired-ended 2 ENCFF075NLI 3034135225 Michael Snyder, Stanford 7f9f118ebb0088cb9b54404043c2f49c SRA:SRR6213632 https://www.encodeproject.org/files/ENCFF705CNE/@@download/ENCFF705CNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF489GWN bam unfiltered alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 101 ENCFF075NLI, ENCFF643CGH, ENCFF705CNE 6476814546 ENCODE Processing Pipeline ea0dc9987530979c9e856af1850b08d1 https://www.encodeproject.org/files/ENCFF489GWN/@@download/ENCFF489GWN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF678JKS bam unfiltered alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 101 ENCFF075NLI, ENCFF705CNE, ENCFF807MUK 6470964927 ENCODE Processing Pipeline 0be2491d8fc9fe3613ffb15d1d9e5ad8 https://www.encodeproject.org/files/ENCFF678JKS/@@download/ENCFF678JKS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF233AQD bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 101 ENCFF075NLI, ENCFF705CNE, ENCFF807MUK 5340587888 ENCODE Processing Pipeline 24581d9998178308aa917506c2f594d4 https://www.encodeproject.org/files/ENCFF233AQD/@@download/ENCFF233AQD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF089XRF bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 101 ENCFF075NLI, ENCFF643CGH, ENCFF705CNE 5343959597 ENCODE Processing Pipeline 49237ee5b8431878f95984a88ab73b38 https://www.encodeproject.org/files/ENCFF089XRF/@@download/ENCFF089XRF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF418IMV bigWig signal p-value ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF679QQL 1377262400 ENCODE Processing Pipeline fdf582732c26e4c53268d79f22cdbb0c https://www.encodeproject.org/files/ENCFF418IMV/@@download/ENCFF418IMV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF567DGR bigWig signal p-value ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF089XRF 1477214279 ENCODE Processing Pipeline c12be756bbe552248a076c38f4f87c79 https://www.encodeproject.org/files/ENCFF567DGR/@@download/ENCFF567DGR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF767ZUK bigWig fold change over control ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF679QQL 1465027799 ENCODE Processing Pipeline 4196baba952629f101931166495300e5 https://www.encodeproject.org/files/ENCFF767ZUK/@@download/ENCFF767ZUK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF003ROP bigWig signal p-value ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF233AQD 1504034672 ENCODE Processing Pipeline bfaad5876b879a1650411fe6c90ade52 https://www.encodeproject.org/files/ENCFF003ROP/@@download/ENCFF003ROP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF195BFJ bigWig signal p-value ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF089XRF, ENCFF393EHE 1985376271 ENCODE Processing Pipeline 293574e56c10de40dc239e80863b39aa https://www.encodeproject.org/files/ENCFF195BFJ/@@download/ENCFF195BFJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF964WEE bigWig signal p-value ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF233AQD, ENCFF679QQL 1966735803 ENCODE Processing Pipeline 228b12db9550f654d2b9386e3b6af39e https://www.encodeproject.org/files/ENCFF964WEE/@@download/ENCFF964WEE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF785EQD bigWig fold change over control ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF089XRF 1526168082 ENCODE Processing Pipeline b22e121be70681a3bbafe7730c5195e4 https://www.encodeproject.org/files/ENCFF785EQD/@@download/ENCFF785EQD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF835UWT bigWig fold change over control ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF233AQD 1525871849 ENCODE Processing Pipeline b14abc046929cb079e65f423ea2d8b31 https://www.encodeproject.org/files/ENCFF835UWT/@@download/ENCFF835UWT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF288ZFT bigWig fold change over control ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF089XRF, ENCFF393EHE 2105521461 ENCODE Processing Pipeline 99e63834242957861b01f5b8cc6fc9ea https://www.encodeproject.org/files/ENCFF288ZFT/@@download/ENCFF288ZFT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF667MMW bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF089XRF 6182675 ENCODE Processing Pipeline 0f568629aa460829eca196f716c1f0f6 https://www.encodeproject.org/files/ENCFF667MMW/@@download/ENCFF667MMW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF857GCN bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF089XRF, ENCFF393EHE 7072681 ENCODE Processing Pipeline 322f91ef1aad4dacabade6920c6b185d https://www.encodeproject.org/files/ENCFF857GCN/@@download/ENCFF857GCN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF878HEZ bigBed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF667MMW 11266111 ENCODE Processing Pipeline c9ce522a0b7a16f1d8a314068035af11 https://www.encodeproject.org/files/ENCFF878HEZ/@@download/ENCFF878HEZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF106WXX bed narrowPeak optimal idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF419RSJ, ENCFF667MMW, ENCFF857BZM, ENCFF857GCN 66634 ENCODE Processing Pipeline c794534066a4532e788350f450112906 https://www.encodeproject.org/files/ENCFF106WXX/@@download/ENCFF106WXX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF462HMZ bigBed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF713XEQ 11136806 ENCODE Processing Pipeline 461d659f8907d42e0e4b92c1895e4a1a https://www.encodeproject.org/files/ENCFF462HMZ/@@download/ENCFF462HMZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF386VHG bigBed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF499GFC 11313593 ENCODE Processing Pipeline 1f7bd32f1aa3bd0bbf3ab80426f6cd2a https://www.encodeproject.org/files/ENCFF386VHG/@@download/ENCFF386VHG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF797DFO bed narrowPeak conservative idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF001TDO, ENCFF440LIF, ENCFF499GFC, ENCFF713XEQ 45740 ENCODE Processing Pipeline f26d8b4a0b47ba62a1ce28ec019ea5f5 https://www.encodeproject.org/files/ENCFF797DFO/@@download/ENCFF797DFO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF732VKK bigBed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF857GCN 11320973 ENCODE Processing Pipeline 54963cde8548e97a1cd5764df53dfc20 https://www.encodeproject.org/files/ENCFF732VKK/@@download/ENCFF732VKK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF270NWL bed narrowPeak conservative idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF419RSJ, ENCFF667MMW, ENCFF857BZM, ENCFF857GCN 46862 ENCODE Processing Pipeline 5c6f85be21a3c826fd3aab805e76f4ad https://www.encodeproject.org/files/ENCFF270NWL/@@download/ENCFF270NWL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF315KXK bigBed narrowPeak conservative idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF270NWL 133859 ENCODE Processing Pipeline 70ce9f4e3f2c066d0a87f3c0fffd73ac https://www.encodeproject.org/files/ENCFF315KXK/@@download/ENCFF315KXK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF440LIF bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF233AQD 6181526 ENCODE Processing Pipeline 9505bc8d8fddd769a2644f17cbd29319 https://www.encodeproject.org/files/ENCFF440LIF/@@download/ENCFF440LIF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF499GFC bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF233AQD, ENCFF679QQL 7045639 ENCODE Processing Pipeline 66dabddc2544e29d8eef99b2a18f24d6 https://www.encodeproject.org/files/ENCFF499GFC/@@download/ENCFF499GFC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF449NZW bigWig fold change over control ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF233AQD, ENCFF679QQL 2084824068 ENCODE Processing Pipeline 5d45d12eb73a7e66c8b916323b8257f4 https://www.encodeproject.org/files/ENCFF449NZW/@@download/ENCFF449NZW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF956DTF bigBed narrowPeak optimal idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF106WXX 163547 ENCODE Processing Pipeline cc95f8d4384b3ddc1612fcc9c3be119f https://www.encodeproject.org/files/ENCFF956DTF/@@download/ENCFF956DTF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF189RKH bigBed narrowPeak conservative idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF797DFO 130309 ENCODE Processing Pipeline 54ce265127c7453ff257093090acc782 https://www.encodeproject.org/files/ENCFF189RKH/@@download/ENCFF189RKH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF936REC bigBed narrowPeak optimal idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF327OLE 160963 ENCODE Processing Pipeline f467ea1a1e9de817623d374246f15e21 https://www.encodeproject.org/files/ENCFF936REC/@@download/ENCFF936REC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF713XEQ bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF679QQL 6291482 ENCODE Processing Pipeline 63f877f2b4045d1cce4cc9224be10d9b https://www.encodeproject.org/files/ENCFF713XEQ/@@download/ENCFF713XEQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF682IFW bigBed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 ENCFF440LIF 11241139 ENCODE Processing Pipeline b8459943872c5786a44d61eb3a5ab9d2 https://www.encodeproject.org/files/ENCFF682IFW/@@download/ENCFF682IFW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF327OLE bed narrowPeak optimal idr thresholded peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2, 3 ENCFF001TDO, ENCFF440LIF, ENCFF499GFC, ENCFF713XEQ 66052 ENCODE Processing Pipeline 501d2e53908f7b544ac1f4282ef9b167 https://www.encodeproject.org/files/ENCFF327OLE/@@download/ENCFF327OLE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF343SQT fastq reads ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF203JRY 2979652095 Michael Snyder, Stanford 71a42764681c786be7dc7b2cc63ae349 SRA:SRR5111464 https://www.encodeproject.org/files/ENCFF343SQT/@@download/ENCFF343SQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF161OGL fastq reads ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF522WIQ 2943635103 Michael Snyder, Stanford 3f754960acdfb51f6c2765a32edda995 SRA:SRR5111465 https://www.encodeproject.org/files/ENCFF161OGL/@@download/ENCFF161OGL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF203JRY fastq reads ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF343SQT 3044125855 Michael Snyder, Stanford 80b3eddfca7f40b6972ebb780716c396 SRA:SRR5111464 https://www.encodeproject.org/files/ENCFF203JRY/@@download/ENCFF203JRY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF522WIQ fastq reads ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF161OGL 3015712675 Michael Snyder, Stanford fc34b34cbba2252fe75a5b83491172fb SRA:SRR5111465 https://www.encodeproject.org/files/ENCFF522WIQ/@@download/ENCFF522WIQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF943MPQ bam unfiltered alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF203JRY, ENCFF343SQT, ENCFF807MUK 6577037753 ENCODE Processing Pipeline a39f9763939b8ca30a9c83a4c520ac2d https://www.encodeproject.org/files/ENCFF943MPQ/@@download/ENCFF943MPQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF219LWX bam unfiltered alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF161OGL, ENCFF522WIQ, ENCFF643CGH 6535525870 ENCODE Processing Pipeline ba76b7d3eaa2d90c8cb40a7000fc61c8 https://www.encodeproject.org/files/ENCFF219LWX/@@download/ENCFF219LWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF580DAR bam unfiltered alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF161OGL, ENCFF522WIQ, ENCFF807MUK 6525605660 ENCODE Processing Pipeline 5c126d38e0aad262e885c96fb005156e https://www.encodeproject.org/files/ENCFF580DAR/@@download/ENCFF580DAR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF949WCL bam unfiltered alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF203JRY, ENCFF343SQT, ENCFF643CGH 6585422739 ENCODE Processing Pipeline 8ee1065ea593d113219447e523bd587c https://www.encodeproject.org/files/ENCFF949WCL/@@download/ENCFF949WCL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF156RXB bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF203JRY, ENCFF343SQT, ENCFF807MUK 5753271889 ENCODE Processing Pipeline 5fef984c116ece24b3a9ce28282e0422 https://www.encodeproject.org/files/ENCFF156RXB/@@download/ENCFF156RXB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF037KRM bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF161OGL, ENCFF522WIQ, ENCFF643CGH 5771339184 ENCODE Processing Pipeline 2f77f5f608c4497306e275c68810e287 https://www.encodeproject.org/files/ENCFF037KRM/@@download/ENCFF037KRM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF163LZX bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF203JRY, ENCFF343SQT, ENCFF643CGH 5757827924 ENCODE Processing Pipeline afa38b757b464ed5b219a6f3221177a8 https://www.encodeproject.org/files/ENCFF163LZX/@@download/ENCFF163LZX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF996TTV bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF161OGL, ENCFF522WIQ, ENCFF807MUK 5766914668 ENCODE Processing Pipeline 182df267e8512d9c750b334f57a3a9bb https://www.encodeproject.org/files/ENCFF996TTV/@@download/ENCFF996TTV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF494ILU bigWig signal p-value ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF156RXB 1528136392 ENCODE Processing Pipeline ab29c84effcffb2d18288cdcb5ed5034 https://www.encodeproject.org/files/ENCFF494ILU/@@download/ENCFF494ILU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF926FHD bigWig signal p-value ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF996TTV 1496100963 ENCODE Processing Pipeline 286d5c9b135c1037cc8285c550848604 https://www.encodeproject.org/files/ENCFF926FHD/@@download/ENCFF926FHD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF939SYE bigWig signal p-value ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF156RXB, ENCFF996TTV 1961808030 ENCODE Processing Pipeline 81a6705dd97d6e7622e057cf9f86d88d https://www.encodeproject.org/files/ENCFF939SYE/@@download/ENCFF939SYE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF769AYO bigWig fold change over control ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF156RXB 1608602910 ENCODE Processing Pipeline 0d96f5b0930970b94b835b8e3e297af1 https://www.encodeproject.org/files/ENCFF769AYO/@@download/ENCFF769AYO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF518YWB bigWig fold change over control ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF996TTV 1558948676 ENCODE Processing Pipeline 9e7cbbf0e0981872b010611ee254bdbe https://www.encodeproject.org/files/ENCFF518YWB/@@download/ENCFF518YWB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF733FRG bigWig fold change over control ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF156RXB, ENCFF996TTV 2184240855 ENCODE Processing Pipeline b1da00a4aff985a127df77cb82c27109 https://www.encodeproject.org/files/ENCFF733FRG/@@download/ENCFF733FRG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF501PBQ bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF156RXB 6576357 ENCODE Processing Pipeline 915ad95ce18ff8ec88f16facca60094f https://www.encodeproject.org/files/ENCFF501PBQ/@@download/ENCFF501PBQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF915WBL bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF996TTV 6636351 ENCODE Processing Pipeline aa6214bf9cc3688a95b0a0237f464f83 https://www.encodeproject.org/files/ENCFF915WBL/@@download/ENCFF915WBL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF426DPL bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF156RXB, ENCFF996TTV 7183074 ENCODE Processing Pipeline ef3046a2a706bca427fda67ae249f135 https://www.encodeproject.org/files/ENCFF426DPL/@@download/ENCFF426DPL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF493MTU bigBed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF501PBQ 11203968 ENCODE Processing Pipeline 0d37b94e26570485ca01b80d654e2bba https://www.encodeproject.org/files/ENCFF493MTU/@@download/ENCFF493MTU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF982QJM bigBed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF915WBL 11209491 ENCODE Processing Pipeline f9cd2c3c81273864cc3cde097d827308 https://www.encodeproject.org/files/ENCFF982QJM/@@download/ENCFF982QJM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF358AQS bigBed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF426DPL 11323484 ENCODE Processing Pipeline 19ba3a44e3a7014e55f3bcb2e71b124d https://www.encodeproject.org/files/ENCFF358AQS/@@download/ENCFF358AQS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF265XWO bed narrowPeak conservative idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF426DPL, ENCFF501PBQ, ENCFF915WBL 9676 ENCODE Processing Pipeline 37afef0b19567ae8f7a6a4f20d77367f https://www.encodeproject.org/files/ENCFF265XWO/@@download/ENCFF265XWO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF693APD bigBed narrowPeak conservative idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF265XWO 67384 ENCODE Processing Pipeline c610566a16fd9632d555bd3664a23267 https://www.encodeproject.org/files/ENCFF693APD/@@download/ENCFF693APD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF429ZIY bed narrowPeak optimal idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF426DPL, ENCFF501PBQ, ENCFF915WBL 18212 ENCODE Processing Pipeline d64e3cf006ce4efc395bab81f40295ff https://www.encodeproject.org/files/ENCFF429ZIY/@@download/ENCFF429ZIY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF587MOT bigBed narrowPeak optimal idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF429ZIY 81689 ENCODE Processing Pipeline 05b13211de0d5f69a118b85f096c26eb https://www.encodeproject.org/files/ENCFF587MOT/@@download/ENCFF587MOT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF421IAT bigWig signal p-value ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF163LZX 1382839927 ENCODE Processing Pipeline d415546871753f51bb94e80b39889c1b https://www.encodeproject.org/files/ENCFF421IAT/@@download/ENCFF421IAT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF143JBF bigWig signal p-value ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF037KRM 1470418468 ENCODE Processing Pipeline 7d2de1ce1e4b5ea78a75f3cd7f67c278 https://www.encodeproject.org/files/ENCFF143JBF/@@download/ENCFF143JBF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF409RQP bigWig signal p-value ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF037KRM, ENCFF163LZX 1951354922 ENCODE Processing Pipeline 4014bd8fc4a2234269bd0dd6f65b1979 https://www.encodeproject.org/files/ENCFF409RQP/@@download/ENCFF409RQP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF087ETM bigWig fold change over control ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF163LZX 1559034300 ENCODE Processing Pipeline 89ab568afbbf23de6498089e17a62a5b https://www.encodeproject.org/files/ENCFF087ETM/@@download/ENCFF087ETM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF913GRP bigWig fold change over control ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF037KRM 1561749759 ENCODE Processing Pipeline c18e8ac24509707fb7389bcea0946d03 https://www.encodeproject.org/files/ENCFF913GRP/@@download/ENCFF913GRP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF061EEU bigWig fold change over control ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF037KRM, ENCFF163LZX 2164872200 ENCODE Processing Pipeline 5008b37ded1f8d893d7c9f71ee4aa8e1 https://www.encodeproject.org/files/ENCFF061EEU/@@download/ENCFF061EEU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF410TTZ bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF163LZX 6436363 ENCODE Processing Pipeline 07635dc12ecf156df1becf134339bba8 https://www.encodeproject.org/files/ENCFF410TTZ/@@download/ENCFF410TTZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF937CTG bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF037KRM 6499649 ENCODE Processing Pipeline cdbc0fe4fd96b76e27efa1816927c189 https://www.encodeproject.org/files/ENCFF937CTG/@@download/ENCFF937CTG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF193RUZ bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF037KRM, ENCFF163LZX 7136056 ENCODE Processing Pipeline 98bd072aaaa015a6e1b6638efaf865b5 https://www.encodeproject.org/files/ENCFF193RUZ/@@download/ENCFF193RUZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF425OEN bigBed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF937CTG 11227341 ENCODE Processing Pipeline 1b53a2b9394f70d621ca5bb0dda8facb https://www.encodeproject.org/files/ENCFF425OEN/@@download/ENCFF425OEN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF999YFU bigBed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF410TTZ 11233123 ENCODE Processing Pipeline 101dbeb10277176eb1852f5ce6dc06e3 https://www.encodeproject.org/files/ENCFF999YFU/@@download/ENCFF999YFU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF126AFS bigBed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193RUZ 11341729 ENCODE Processing Pipeline 4f5bb3da20794f6c7c2a8d748550f8ea https://www.encodeproject.org/files/ENCFF126AFS/@@download/ENCFF126AFS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF127KFE bed narrowPeak conservative idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193RUZ, ENCFF410TTZ, ENCFF419RSJ, ENCFF937CTG 10527 ENCODE Processing Pipeline 90e18b56fbb9f279f5a218689baf541e https://www.encodeproject.org/files/ENCFF127KFE/@@download/ENCFF127KFE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF594IJK bigBed narrowPeak conservative idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF127KFE 70309 ENCODE Processing Pipeline 81d619ce2121c706b76a15d19f762bb7 https://www.encodeproject.org/files/ENCFF594IJK/@@download/ENCFF594IJK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF720MYN bed narrowPeak optimal idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193RUZ, ENCFF410TTZ, ENCFF419RSJ, ENCFF937CTG 19614 ENCODE Processing Pipeline 9189f84bda936891b1d7786505aaf520 https://www.encodeproject.org/files/ENCFF720MYN/@@download/ENCFF720MYN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF250DAM bigBed narrowPeak optimal idr thresholded peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF720MYN 85877 ENCODE Processing Pipeline fd148049f036dd78ebb4bdc2468f9d84 https://www.encodeproject.org/files/ENCFF250DAM/@@download/ENCFF250DAM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF196AKS fastq reads ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF642JVD 2366717319 Michael Snyder, Stanford 54e7abff3c709ee175db3f4e28533ba0 SRA:SRR6213505 https://www.encodeproject.org/files/ENCFF196AKS/@@download/ENCFF196AKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF642JVD fastq reads ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF196AKS 2307039498 Michael Snyder, Stanford 7ef09d5e703be9491a26fdb8d133cdf1 SRA:SRR6213505 https://www.encodeproject.org/files/ENCFF642JVD/@@download/ENCFF642JVD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF244ECJ fastq reads ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF335ZAN 2051365074 Michael Snyder, Stanford 0aa1e519b4dd93b3f7eb094b9b65db2e SRA:SRR6213504 https://www.encodeproject.org/files/ENCFF244ECJ/@@download/ENCFF244ECJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF335ZAN fastq reads ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF244ECJ 2075407140 Michael Snyder, Stanford 5daa8e7048a132b183c2c8e250296c73 SRA:SRR6213504 https://www.encodeproject.org/files/ENCFF335ZAN/@@download/ENCFF335ZAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF873IPB bam unfiltered alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF244ECJ, ENCFF335ZAN, ENCFF807MUK 4363289378 ENCODE Processing Pipeline 9f3f75e39b7025164245685a0c3ef36b https://www.encodeproject.org/files/ENCFF873IPB/@@download/ENCFF873IPB.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF750PMI bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF244ECJ, ENCFF335ZAN, ENCFF807MUK 3310221844 ENCODE Processing Pipeline f48ee944d1bec217c4b4e04a202246e4 https://www.encodeproject.org/files/ENCFF750PMI/@@download/ENCFF750PMI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF510XHR bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF196AKS, ENCFF642JVD, ENCFF807MUK 3967412478 ENCODE Processing Pipeline bcfab615b550faa4733ab5cbf79768d4 https://www.encodeproject.org/files/ENCFF510XHR/@@download/ENCFF510XHR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF151UKE bam unfiltered alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF196AKS, ENCFF642JVD, ENCFF807MUK 4972218571 ENCODE Processing Pipeline 0b657af3cad60ba32e79a0dcfc2eb838 https://www.encodeproject.org/files/ENCFF151UKE/@@download/ENCFF151UKE.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF153SPR bam unfiltered alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF244ECJ, ENCFF335ZAN, ENCFF643CGH 4365933073 ENCODE Processing Pipeline fa49821bc45456edcac251b672c905c1 https://www.encodeproject.org/files/ENCFF153SPR/@@download/ENCFF153SPR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF767FRB bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF244ECJ, ENCFF335ZAN, ENCFF643CGH 3312163555 ENCODE Processing Pipeline 650dd39d4bbd92eced1f9ddc310a16c6 https://www.encodeproject.org/files/ENCFF767FRB/@@download/ENCFF767FRB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF921KHT bam unfiltered alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF196AKS, ENCFF642JVD, ENCFF643CGH 4975521263 ENCODE Processing Pipeline 4c359d6c93ca947fb2377f1f3c864786 https://www.encodeproject.org/files/ENCFF921KHT/@@download/ENCFF921KHT.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF911BGV bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF196AKS, ENCFF642JVD, ENCFF643CGH 3969987169 ENCODE Processing Pipeline c9ac0375d8ae4c525f2fbc03fd86d5b5 https://www.encodeproject.org/files/ENCFF911BGV/@@download/ENCFF911BGV.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF530GIY bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF767FRB 6777709 ENCODE Processing Pipeline e2874ffe928f5e3b2b2158e2d9ac76dc https://www.encodeproject.org/files/ENCFF530GIY/@@download/ENCFF530GIY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF915WKM bigWig signal p-value ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF767FRB, ENCFF910IKB, ENCFF911BGV 1914831901 ENCODE Processing Pipeline 1b52088cf1d8288ea7c8253b19f0a527 https://www.encodeproject.org/files/ENCFF915WKM/@@download/ENCFF915WKM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF204QHB bigWig fold change over control ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF767FRB 1022386755 ENCODE Processing Pipeline 67eebac1a0ca1bbaa79e2d74a2164afa https://www.encodeproject.org/files/ENCFF204QHB/@@download/ENCFF204QHB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF573PGT bigWig signal p-value ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF227IZS, ENCFF767FRB 1071214853 ENCODE Processing Pipeline 819f4f7a2da47329f3fd359515baa0e8 https://www.encodeproject.org/files/ENCFF573PGT/@@download/ENCFF573PGT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF950ILH bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF910IKB, ENCFF911BGV 6946386 ENCODE Processing Pipeline 8483d127513c4118063faf467a9fbb82 https://www.encodeproject.org/files/ENCFF950ILH/@@download/ENCFF950ILH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF062XSA bigBed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF521EAO 13008450 ENCODE Processing Pipeline ce930e52c42042a385b53c0073e8163e https://www.encodeproject.org/files/ENCFF062XSA/@@download/ENCFF062XSA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF391ISV bigBed narrowPeak conservative idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF119EPK 1137292 ENCODE Processing Pipeline 47953f3757996a8c83b91233c671f440 https://www.encodeproject.org/files/ENCFF391ISV/@@download/ENCFF391ISV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF459DYU bed narrowPeak optimal idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF521EAO, ENCFF530GIY, ENCFF950ILH 576447 ENCODE Processing Pipeline 624fb737709c3ddaa02467eac3bc9eba https://www.encodeproject.org/files/ENCFF459DYU/@@download/ENCFF459DYU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF148KYP bigBed narrowPeak optimal idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF459DYU 1314400 ENCODE Processing Pipeline 0199d77c4cbf829aa015df6cc3d83715 https://www.encodeproject.org/files/ENCFF148KYP/@@download/ENCFF148KYP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF773ZED bigWig signal p-value ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF910IKB, ENCFF911BGV 1105103569 ENCODE Processing Pipeline 50c8640a7c5a2659b0a556bd42c73d30 https://www.encodeproject.org/files/ENCFF773ZED/@@download/ENCFF773ZED.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF875WUL bigWig fold change over control ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF910IKB, ENCFF911BGV 1150503286 ENCODE Processing Pipeline 5491da362ee890bd187a8a692389e59e https://www.encodeproject.org/files/ENCFF875WUL/@@download/ENCFF875WUL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF521EAO bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF767FRB, ENCFF910IKB, ENCFF911BGV 7247401 ENCODE Processing Pipeline a2291ca818def310256efcbd7aa7333f https://www.encodeproject.org/files/ENCFF521EAO/@@download/ENCFF521EAO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF024WNL bigBed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF530GIY 13251497 ENCODE Processing Pipeline 5fd23f0b44f2a7412173d2cd04087606 https://www.encodeproject.org/files/ENCFF024WNL/@@download/ENCFF024WNL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF605PQC bigWig fold change over control ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF227IZS, ENCFF767FRB, ENCFF910IKB, ENCFF911BGV 2024546083 ENCODE Processing Pipeline 5a36eaa793522c2a59153cdd88802f61 https://www.encodeproject.org/files/ENCFF605PQC/@@download/ENCFF605PQC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF524HBS bigBed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF950ILH 13120174 ENCODE Processing Pipeline 4ff572b453e348b5abdc8f7926efafb6 https://www.encodeproject.org/files/ENCFF524HBS/@@download/ENCFF524HBS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF119EPK bed narrowPeak conservative idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF521EAO, ENCFF530GIY, ENCFF950ILH 480583 ENCODE Processing Pipeline 2cb97f1ef2af870da2442d5764851277 https://www.encodeproject.org/files/ENCFF119EPK/@@download/ENCFF119EPK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF799NMK bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF750PMI 6794130 ENCODE Processing Pipeline dc1143c5fb672ca9b5a0bf818538506d https://www.encodeproject.org/files/ENCFF799NMK/@@download/ENCFF799NMK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF228QNJ bed narrowPeak conservative idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF595GHN, ENCFF799NMK, ENCFF846YPA 450613 ENCODE Processing Pipeline cf77539f2a46edb31c4d4c3bc64756e7 https://www.encodeproject.org/files/ENCFF228QNJ/@@download/ENCFF228QNJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF180ZLS bigWig signal p-value ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF750PMI 899062172 ENCODE Processing Pipeline a98c0f9bf169266f1604992b8b6a98e9 https://www.encodeproject.org/files/ENCFF180ZLS/@@download/ENCFF180ZLS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF676IIA bigWig signal p-value ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF510XHR, ENCFF581ZJL, ENCFF750PMI 1687833583 ENCODE Processing Pipeline 8eaa0bafa8ac8da2ea4e80575e3f73d5 https://www.encodeproject.org/files/ENCFF676IIA/@@download/ENCFF676IIA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF447BZB bigBed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF799NMK 13257062 ENCODE Processing Pipeline dcdf9bc23e2ec672bbc5391477fc02f7 https://www.encodeproject.org/files/ENCFF447BZB/@@download/ENCFF447BZB.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF595GHN bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF510XHR, ENCFF581ZJL, ENCFF750PMI 7151498 ENCODE Processing Pipeline e099eb679c86628154d85fb234b9c010 https://www.encodeproject.org/files/ENCFF595GHN/@@download/ENCFF595GHN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF704NZX bigBed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF846YPA 13132854 ENCODE Processing Pipeline a6ce60ae9622ee62575c90069f460d31 https://www.encodeproject.org/files/ENCFF704NZX/@@download/ENCFF704NZX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF645QZR bigBed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF595GHN 12885850 ENCODE Processing Pipeline 26daed0704bf0f332b9ef2d85d765c13 https://www.encodeproject.org/files/ENCFF645QZR/@@download/ENCFF645QZR.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF482MZQ bigWig signal p-value ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF510XHR, ENCFF581ZJL 1062616617 ENCODE Processing Pipeline 4c3625f7f26fc841112f1013b04df843 https://www.encodeproject.org/files/ENCFF482MZQ/@@download/ENCFF482MZQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF323BFO bigWig fold change over control ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF510XHR, ENCFF581ZJL 1149402351 ENCODE Processing Pipeline a22b73be8a19c564b9959038101c085a https://www.encodeproject.org/files/ENCFF323BFO/@@download/ENCFF323BFO.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF025YMU bigWig fold change over control ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF750PMI 1023155941 ENCODE Processing Pipeline 7f130b9e9751d28ee7784756843fb41f https://www.encodeproject.org/files/ENCFF025YMU/@@download/ENCFF025YMU.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF757IZU bigWig fold change over control ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF510XHR, ENCFF581ZJL, ENCFF750PMI 2022513072 ENCODE Processing Pipeline fdaed1c825bbe74960d8abfbf62b6a99 https://www.encodeproject.org/files/ENCFF757IZU/@@download/ENCFF757IZU.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF846YPA bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF510XHR, ENCFF581ZJL 6969714 ENCODE Processing Pipeline 62e5ebddd24974b5d6e8e6dbb6cc0480 https://www.encodeproject.org/files/ENCFF846YPA/@@download/ENCFF846YPA.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF567GSX bed narrowPeak optimal idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF595GHN, ENCFF799NMK, ENCFF846YPA 542551 ENCODE Processing Pipeline dade819d689c4ea2e878e83004ee4f3b https://www.encodeproject.org/files/ENCFF567GSX/@@download/ENCFF567GSX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF852NNM bigBed narrowPeak conservative idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF228QNJ 885810 ENCODE Processing Pipeline a12fdd9971b7c2e0e2ec719a10cc4d1d https://www.encodeproject.org/files/ENCFF852NNM/@@download/ENCFF852NNM.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF261QRX bigBed narrowPeak optimal idr thresholded peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF567GSX 1023838 ENCODE Processing Pipeline dd9fcc41034fed57261cb3364ce72016 https://www.encodeproject.org/files/ENCFF261QRX/@@download/ENCFF261QRX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF665DUM bam unfiltered alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF217JJM, ENCFF424HPQ, ENCFF807MUK 5451114529 ENCODE Processing Pipeline 4842cf2bb75cc373154b86f99853c100 https://www.encodeproject.org/files/ENCFF665DUM/@@download/ENCFF665DUM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF839PXZ bam unfiltered alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF168ZLV, ENCFF807MUK, ENCFF829LEL 8110514633 ENCODE Processing Pipeline 0cea677832418de0413da431bc5aaaa6 https://www.encodeproject.org/files/ENCFF839PXZ/@@download/ENCFF839PXZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF424HPQ fastq reads ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF217JJM 2453998193 Michael Snyder, Stanford bf516615057f7fa191e09c9f0a4ebfcb SRA:SRR5111235 https://www.encodeproject.org/files/ENCFF424HPQ/@@download/ENCFF424HPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF168ZLV fastq reads ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF829LEL 3771411057 Michael Snyder, Stanford 5721f5fac322ba96e33c770533c29423 SRA:SRR5111236 https://www.encodeproject.org/files/ENCFF168ZLV/@@download/ENCFF168ZLV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF217JJM fastq reads ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF424HPQ 2529392560 Michael Snyder, Stanford 4fdc10f230365f2046b83f0cd728d020 SRA:SRR5111235 https://www.encodeproject.org/files/ENCFF217JJM/@@download/ENCFF217JJM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF829LEL fastq reads ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF168ZLV 3811339558 Michael Snyder, Stanford df04bb6a2d4ddb76f825c415a9bb2449 SRA:SRR5111236 https://www.encodeproject.org/files/ENCFF829LEL/@@download/ENCFF829LEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF869KUX bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF168ZLV, ENCFF807MUK, ENCFF829LEL 6867999007 ENCODE Processing Pipeline 13f7cd1b26a29f3269795cdad65d1035 https://www.encodeproject.org/files/ENCFF869KUX/@@download/ENCFF869KUX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF829MEE bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF217JJM, ENCFF424HPQ, ENCFF807MUK 4649347597 ENCODE Processing Pipeline 6bc631cafbc1e87bf5ec73ea2699e46d https://www.encodeproject.org/files/ENCFF829MEE/@@download/ENCFF829MEE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF050MLH bigWig signal p-value ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF829MEE, ENCFF869KUX 2256671235 ENCODE Processing Pipeline d7edf2744c0bb4f51d0bc3ff9ea6f326 https://www.encodeproject.org/files/ENCFF050MLH/@@download/ENCFF050MLH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF911YFI bigWig fold change over control ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF829MEE, ENCFF869KUX 2277423574 ENCODE Processing Pipeline 869c45a04a5d7fa2aef5740a20c3fcc6 https://www.encodeproject.org/files/ENCFF911YFI/@@download/ENCFF911YFI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF302QWW bam unfiltered alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF217JJM, ENCFF424HPQ, ENCFF643CGH 5462699808 ENCODE Processing Pipeline 92b544450a1f463768ae767d2ebd10bb https://www.encodeproject.org/files/ENCFF302QWW/@@download/ENCFF302QWW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF117PKO bam unfiltered alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF168ZLV, ENCFF643CGH, ENCFF829LEL 8124972310 ENCODE Processing Pipeline e63c210ec0352e6e830f45abe4fe0b53 https://www.encodeproject.org/files/ENCFF117PKO/@@download/ENCFF117PKO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF774XPS bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF217JJM, ENCFF424HPQ, ENCFF643CGH 4653236612 ENCODE Processing Pipeline e97bde1230c59824fad36d80e8ed9adc https://www.encodeproject.org/files/ENCFF774XPS/@@download/ENCFF774XPS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF008QCI bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF168ZLV, ENCFF643CGH, ENCFF829LEL 6873715170 ENCODE Processing Pipeline 6c2e59e7531eb2f6cf2855010f3cb22f https://www.encodeproject.org/files/ENCFF008QCI/@@download/ENCFF008QCI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF182CDM bigWig signal p-value ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF774XPS 997432869 ENCODE Processing Pipeline 256da27ff4c9d675dad0e83cb65b5cb5 https://www.encodeproject.org/files/ENCFF182CDM/@@download/ENCFF182CDM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF976FUO bigWig signal p-value ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF008QCI, ENCFF291AFY, ENCFF426RDP 1445948696 ENCODE Processing Pipeline 3922da5c4b58c9975f4320871c8c2a5e https://www.encodeproject.org/files/ENCFF976FUO/@@download/ENCFF976FUO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF391QPU bigWig signal p-value ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF008QCI, ENCFF291AFY, ENCFF426RDP, ENCFF774XPS 2258651186 ENCODE Processing Pipeline 0566b99956759a132775ac49eb12bf08 https://www.encodeproject.org/files/ENCFF391QPU/@@download/ENCFF391QPU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF172YFQ bigWig fold change over control ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF774XPS 1156325207 ENCODE Processing Pipeline bf2066a89dd2d0a17c4556a3619d28b6 https://www.encodeproject.org/files/ENCFF172YFQ/@@download/ENCFF172YFQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF130RGM bigWig fold change over control ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF008QCI, ENCFF291AFY, ENCFF426RDP 1852363590 ENCODE Processing Pipeline 7cdf3f6234b09de2a8b99e63d31f10f5 https://www.encodeproject.org/files/ENCFF130RGM/@@download/ENCFF130RGM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF254KOD bigWig fold change over control ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF008QCI, ENCFF291AFY, ENCFF426RDP, ENCFF774XPS 2279750617 ENCODE Processing Pipeline 16a0a70a13e00a090212a7132a55cb68 https://www.encodeproject.org/files/ENCFF254KOD/@@download/ENCFF254KOD.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF314LFV bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF774XPS 6272509 ENCODE Processing Pipeline 49a2057545ae351132f23bcfc5922331 https://www.encodeproject.org/files/ENCFF314LFV/@@download/ENCFF314LFV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF608PXR bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF008QCI, ENCFF291AFY, ENCFF426RDP 6839218 ENCODE Processing Pipeline 81d7d6560b0e04c622d9236696c5b2ec https://www.encodeproject.org/files/ENCFF608PXR/@@download/ENCFF608PXR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF687DFF bigBed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF314LFV 11189039 ENCODE Processing Pipeline 028c7fa3a3a1fb22e8192fadb13ecf20 https://www.encodeproject.org/files/ENCFF687DFF/@@download/ENCFF687DFF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF966LRJ bigBed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF608PXR 11277661 ENCODE Processing Pipeline bf1d094e3d50d0bdc8cce46b074d2b19 https://www.encodeproject.org/files/ENCFF966LRJ/@@download/ENCFF966LRJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF107QBJ bigBed narrowPeak conservative idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF616IRT 311291 ENCODE Processing Pipeline 39e295d2c7764b075ef42c71edac1ba7 https://www.encodeproject.org/files/ENCFF107QBJ/@@download/ENCFF107QBJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF117IEQ bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF008QCI, ENCFF291AFY, ENCFF426RDP, ENCFF774XPS 7254800 ENCODE Processing Pipeline 929f503f894c9cd42550458f593d2ca7 https://www.encodeproject.org/files/ENCFF117IEQ/@@download/ENCFF117IEQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF616IRT bed narrowPeak conservative idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF117IEQ, ENCFF314LFV, ENCFF419RSJ, ENCFF608PXR 136587 ENCODE Processing Pipeline 33ef6d39aeca1db48c82a52e6827e491 https://www.encodeproject.org/files/ENCFF616IRT/@@download/ENCFF616IRT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF982SDQ bigBed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF117IEQ 11240048 ENCODE Processing Pipeline cde400f4cb3161b9264a601c853f27b1 https://www.encodeproject.org/files/ENCFF982SDQ/@@download/ENCFF982SDQ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF275WAD bed narrowPeak optimal idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF117IEQ, ENCFF314LFV, ENCFF419RSJ, ENCFF608PXR 196142 ENCODE Processing Pipeline c897ce99251b23e1908a5e8b8568b525 https://www.encodeproject.org/files/ENCFF275WAD/@@download/ENCFF275WAD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF142QHC bigBed narrowPeak optimal idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF275WAD 403415 ENCODE Processing Pipeline 616d0de6606c327ef2748be23435247c https://www.encodeproject.org/files/ENCFF142QHC/@@download/ENCFF142QHC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF427LWM bigWig fold change over control ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF829MEE 1150519273 ENCODE Processing Pipeline e2fbb43843911cb7fe62f44282989edf https://www.encodeproject.org/files/ENCFF427LWM/@@download/ENCFF427LWM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF170DQS bigWig fold change over control ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF869KUX 1849477480 ENCODE Processing Pipeline 651747146864d3c1f6a7a44a91c8e8ad https://www.encodeproject.org/files/ENCFF170DQS/@@download/ENCFF170DQS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF616VPQ bigWig signal p-value ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF829MEE 887934661 ENCODE Processing Pipeline 8b923ce2f0f276e10f245cd8fd5fb7a4 https://www.encodeproject.org/files/ENCFF616VPQ/@@download/ENCFF616VPQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF169SVI bigWig signal p-value ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF869KUX 1665309838 ENCODE Processing Pipeline 01ee83a9ebbf370e6342d59588eb1485 https://www.encodeproject.org/files/ENCFF169SVI/@@download/ENCFF169SVI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF225KYS bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF869KUX 6832143 ENCODE Processing Pipeline 1cdd3974853b9cfc638c15630be886dd https://www.encodeproject.org/files/ENCFF225KYS/@@download/ENCFF225KYS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF121TQN bigBed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF642ZUX 11174215 ENCODE Processing Pipeline 8e1deb11802c212fd2299375e2ec72a0 https://www.encodeproject.org/files/ENCFF121TQN/@@download/ENCFF121TQN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF104KSB bigBed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF225KYS 11258502 ENCODE Processing Pipeline fdec6d358f01fe108aa5ffa618d4d76f https://www.encodeproject.org/files/ENCFF104KSB/@@download/ENCFF104KSB.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF642ZUX bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF829MEE 6272080 ENCODE Processing Pipeline 68f26d51b5cf69624c9622f1f1e737ea https://www.encodeproject.org/files/ENCFF642ZUX/@@download/ENCFF642ZUX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF976QJV bigBed narrowPeak conservative idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF100GRL 309053 ENCODE Processing Pipeline 0c410c510dc0d28326f3c0c0ae43e8c2 https://www.encodeproject.org/files/ENCFF976QJV/@@download/ENCFF976QJV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF768JTV bigBed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF531PCT 11223719 ENCODE Processing Pipeline 1be701508483dfa6a7c81763b34a934a https://www.encodeproject.org/files/ENCFF768JTV/@@download/ENCFF768JTV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF531PCT bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF829MEE, ENCFF869KUX 7247963 ENCODE Processing Pipeline 6a7dda53d848af2854771fd5975601dc https://www.encodeproject.org/files/ENCFF531PCT/@@download/ENCFF531PCT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF576UUX bigBed narrowPeak optimal idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF870CER 397938 ENCODE Processing Pipeline 2ced77ca826e580f94d42f0a51ef0e21 https://www.encodeproject.org/files/ENCFF576UUX/@@download/ENCFF576UUX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF100GRL bed narrowPeak conservative idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF225KYS, ENCFF531PCT, ENCFF642ZUX 136129 ENCODE Processing Pipeline 16f0e0847280926e331a98aee6c03009 https://www.encodeproject.org/files/ENCFF100GRL/@@download/ENCFF100GRL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF870CER bed narrowPeak optimal idr thresholded peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF225KYS, ENCFF531PCT, ENCFF642ZUX 194548 ENCODE Processing Pipeline cf46823662aa528fb2ccec35723bccae https://www.encodeproject.org/files/ENCFF870CER/@@download/ENCFF870CER.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF853XMX bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF807MUK 1597367370 ENCODE Processing Pipeline a30b3cdb71f8d842bf9cd010264fdcb2 https://www.encodeproject.org/files/ENCFF853XMX/@@download/ENCFF853XMX.bam hg19 released low read length, low read depth ENCFF433DBU bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF807MUK, ENCFF818LOF 965419270 ENCODE Processing Pipeline 982d8bdfe2a02e660411f0617b6fd570 https://www.encodeproject.org/files/ENCFF433DBU/@@download/ENCFF433DBU.bam hg19 released low read length, low read depth ENCFF818LOF fastq reads ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 1 36 single-ended 798399785 Michael Snyder, Stanford 78f086d82958bd5e1c2cada3a35a1f11 SRA:SRR5111456 https://www.encodeproject.org/files/ENCFF818LOF/@@download/ENCFF818LOF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, low read depth ENCFF079VLS fastq reads ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 1 36 single-ended 1334051574 Michael Snyder, Stanford 9d9cbc1877353d0659b3a2c10caee521 SRA:SRR5111455 https://www.encodeproject.org/files/ENCFF079VLS/@@download/ENCFF079VLS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, low read depth ENCFF634ELX bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF807MUK, ENCFF818LOF 613962324 ENCODE Processing Pipeline cb83ce5e763a74e401d877d14b87bba5 https://www.encodeproject.org/files/ENCFF634ELX/@@download/ENCFF634ELX.bam hg19 released low read length, low read depth ENCFF464GJM bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF807MUK 1130557828 ENCODE Processing Pipeline a3409f564b1044a95b71eba44771f46d https://www.encodeproject.org/files/ENCFF464GJM/@@download/ENCFF464GJM.bam hg19 released low read length, low read depth ENCFF751CNI bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 539234048 ENCODE Processing Pipeline a78d26c8b8e60aa702c70fa9f30455ac https://www.encodeproject.org/files/ENCFF751CNI/@@download/ENCFF751CNI.bigWig hg19 released low read length, low read depth ENCFF314ENT bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF464GJM, ENCFF849LYY 607218575 ENCODE Processing Pipeline 7e6d7b32f34fedaf4cd3736c41b0a28c https://www.encodeproject.org/files/ENCFF314ENT/@@download/ENCFF314ENT.bigWig hg19 released low read length, low read depth ENCFF451RMK bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF426WJH, ENCFF464GJM, ENCFF634ELX, ENCFF849LYY 913043823 ENCODE Processing Pipeline 962e3b7708a67f375e9be09a04bdffed https://www.encodeproject.org/files/ENCFF451RMK/@@download/ENCFF451RMK.bigWig hg19 released low read length, low read depth ENCFF939JWJ bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF464GJM, ENCFF849LYY 551505921 ENCODE Processing Pipeline 18e0139a3b4744cb43081a29d49d01ab https://www.encodeproject.org/files/ENCFF939JWJ/@@download/ENCFF939JWJ.bigWig hg19 released low read length, low read depth ENCFF339SKT bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 358584424 ENCODE Processing Pipeline f40c95e9e382344421fe5d8381c13d2c https://www.encodeproject.org/files/ENCFF339SKT/@@download/ENCFF339SKT.bigWig hg19 released low read length, low read depth ENCFF183UMP bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF426WJH, ENCFF464GJM, ENCFF634ELX, ENCFF849LYY 1020435897 ENCODE Processing Pipeline 4c5d96b9d0d5e4bdf478cc2e918d5bf5 https://www.encodeproject.org/files/ENCFF183UMP/@@download/ENCFF183UMP.bigWig hg19 released low read length, low read depth ENCFF932DYK bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 4436318 ENCODE Processing Pipeline d2c17667ce64ae8b302a304bc09b6b67 https://www.encodeproject.org/files/ENCFF932DYK/@@download/ENCFF932DYK.bed.gz hg19 released low read length, low read depth ENCFF697XCB bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF932DYK 10894231 ENCODE Processing Pipeline dad2b447b9215cde8a0bd58b6dcd6c3c https://www.encodeproject.org/files/ENCFF697XCB/@@download/ENCFF697XCB.bigBed hg19 released low read length, low read depth ENCFF140CXA bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF464GJM, ENCFF849LYY 5298512 ENCODE Processing Pipeline bcf9237be2e295e2ebeb2c55425db377 https://www.encodeproject.org/files/ENCFF140CXA/@@download/ENCFF140CXA.bed.gz hg19 released low read length, low read depth ENCFF045PNJ bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF426WJH, ENCFF464GJM, ENCFF634ELX, ENCFF849LYY 2141851 ENCODE Processing Pipeline ec4e1819c48903e5afbf4ba4e5bf609a https://www.encodeproject.org/files/ENCFF045PNJ/@@download/ENCFF045PNJ.bed.gz hg19 released low read length, low read depth ENCFF110UKE bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF140CXA 11414361 ENCODE Processing Pipeline 1467b11313df17c12c0036b82a779eb8 https://www.encodeproject.org/files/ENCFF110UKE/@@download/ENCFF110UKE.bigBed hg19 released low read length, low read depth ENCFF919JAN bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF045PNJ 4110221 ENCODE Processing Pipeline fe0c3885d837dc008717a9a2151ceae8 https://www.encodeproject.org/files/ENCFF919JAN/@@download/ENCFF919JAN.bigBed hg19 released low read length, low read depth ENCFF267KMU bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF643CGH 1603341574 ENCODE Processing Pipeline 71a67d8f25e210d22af98875eb3e6867 https://www.encodeproject.org/files/ENCFF267KMU/@@download/ENCFF267KMU.bam GRCh38 released low read length, low read depth ENCFF878WNM bam unfiltered alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF643CGH, ENCFF818LOF 969873012 ENCODE Processing Pipeline 2af49b6c95102c9cf6497a181194f0e5 https://www.encodeproject.org/files/ENCFF878WNM/@@download/ENCFF878WNM.bam GRCh38 released low read length, low read depth ENCFF917WPY bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF643CGH, ENCFF818LOF 614082774 ENCODE Processing Pipeline d9a6392599d1acf80a3d0f63780226f7 https://www.encodeproject.org/files/ENCFF917WPY/@@download/ENCFF917WPY.bam GRCh38 released low read length, low read depth ENCFF923TDM bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF643CGH 1133337509 ENCODE Processing Pipeline a8ead3cbd08baa9f992b21740271089b https://www.encodeproject.org/files/ENCFF923TDM/@@download/ENCFF923TDM.bam GRCh38 released low read length, low read depth ENCFF244CPF bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF872ERZ, ENCFF917WPY 406553973 ENCODE Processing Pipeline 1735e4ea5a8b73235d7cdb5013518964 https://www.encodeproject.org/files/ENCFF244CPF/@@download/ENCFF244CPF.bigWig GRCh38 released low read length, low read depth ENCFF229FNP bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF272DEZ, ENCFF923TDM 547891064 ENCODE Processing Pipeline 962f7a2a920fccc50ad0b3dde62e68bf https://www.encodeproject.org/files/ENCFF229FNP/@@download/ENCFF229FNP.bigWig GRCh38 released low read length, low read depth ENCFF881RMX bigWig signal p-value ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF272DEZ, ENCFF872ERZ, ENCFF917WPY, ENCFF923TDM 880755275 ENCODE Processing Pipeline 7ed30846ec33bcce63d53745bd69ab84 https://www.encodeproject.org/files/ENCFF881RMX/@@download/ENCFF881RMX.bigWig GRCh38 released low read length, low read depth ENCFF708UPU bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF872ERZ, ENCFF917WPY 349604396 ENCODE Processing Pipeline 08a42d58d603e8d3abf2abc6a0df0d2a https://www.encodeproject.org/files/ENCFF708UPU/@@download/ENCFF708UPU.bigWig GRCh38 released low read length, low read depth ENCFF300LFU bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF272DEZ, ENCFF923TDM 568320726 ENCODE Processing Pipeline e5da23929cd9741ad3e415903ff8d1a6 https://www.encodeproject.org/files/ENCFF300LFU/@@download/ENCFF300LFU.bigWig GRCh38 released low read length, low read depth ENCFF401YZO bigWig fold change over control ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF272DEZ, ENCFF872ERZ, ENCFF917WPY, ENCFF923TDM 1042440778 ENCODE Processing Pipeline 94a0ca1ebe17bb89c61c07b62f09b9aa https://www.encodeproject.org/files/ENCFF401YZO/@@download/ENCFF401YZO.bigWig GRCh38 released low read length, low read depth ENCFF875FAP bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF481KGJ 11352230 ENCODE Processing Pipeline 073c2df3675416aaea0618a8733773ec https://www.encodeproject.org/files/ENCFF875FAP/@@download/ENCFF875FAP.bigBed GRCh38 released low read length, low read depth ENCFF595BGA bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF139LGS 10693766 ENCODE Processing Pipeline 2ad609d356518f5bf72f0e1f300f1056 https://www.encodeproject.org/files/ENCFF595BGA/@@download/ENCFF595BGA.bigBed GRCh38 released low read length, low read depth ENCFF188GCC bigBed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF926DVU 4204291 ENCODE Processing Pipeline 9a35b0aab591cf6acd4ff6cf614412fd https://www.encodeproject.org/files/ENCFF188GCC/@@download/ENCFF188GCC.bigBed GRCh38 released low read length, low read depth ENCFF139LGS bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF872ERZ, ENCFF917WPY 4224327 ENCODE Processing Pipeline 46f1af108ccb9df0a8d244c06ff5ab3b https://www.encodeproject.org/files/ENCFF139LGS/@@download/ENCFF139LGS.bed.gz GRCh38 released low read length, low read depth ENCFF481KGJ bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 ENCFF272DEZ, ENCFF923TDM 5074705 ENCODE Processing Pipeline 9b2133bfe7c44c8ae809fa5bf036a953 https://www.encodeproject.org/files/ENCFF481KGJ/@@download/ENCFF481KGJ.bed.gz GRCh38 released low read length, low read depth ENCFF926DVU bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF272DEZ, ENCFF872ERZ, ENCFF917WPY, ENCFF923TDM 2128545 ENCODE Processing Pipeline 00a4a80b98df7a2c37c2d08ea1062e0b https://www.encodeproject.org/files/ENCFF926DVU/@@download/ENCFF926DVU.bed.gz GRCh38 released low read length, low read depth ENCFF243GOG bed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF139LGS, ENCFF419RSJ, ENCFF481KGJ, ENCFF926DVU 28198 ENCODE Processing Pipeline bc338bff1e47a9486b87ed7aef91a259 https://www.encodeproject.org/files/ENCFF243GOG/@@download/ENCFF243GOG.bed.gz GRCh38 released low read length, low read depth ENCFF163JYV bed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF139LGS, ENCFF419RSJ, ENCFF481KGJ, ENCFF926DVU 24424 ENCODE Processing Pipeline 9fa7397320152b8a7820a8bc6bb4c673 https://www.encodeproject.org/files/ENCFF163JYV/@@download/ENCFF163JYV.bed.gz GRCh38 released low read length, low read depth ENCFF873PUQ bigBed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF163JYV 96751 ENCODE Processing Pipeline 92d1d3db086996ff327a215718969376 https://www.encodeproject.org/files/ENCFF873PUQ/@@download/ENCFF873PUQ.bigBed GRCh38 released low read length, low read depth ENCFF141ZMD bigBed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF243GOG 103155 ENCODE Processing Pipeline 6d29ff8c73629af7eb8530634b2f0c05 https://www.encodeproject.org/files/ENCFF141ZMD/@@download/ENCFF141ZMD.bigBed GRCh38 released low read length, low read depth ENCFF235AEB bed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF001TDO, ENCFF045PNJ, ENCFF140CXA, ENCFF932DYK 17728 ENCODE Processing Pipeline c5a6e7792464222ef9a78822c79405e6 https://www.encodeproject.org/files/ENCFF235AEB/@@download/ENCFF235AEB.bed.gz hg19 released low read length, low read depth ENCFF920HDC bed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF001TDO, ENCFF045PNJ, ENCFF140CXA, ENCFF932DYK 20648 ENCODE Processing Pipeline e61bfccca114033dcdd022214dce007f https://www.encodeproject.org/files/ENCFF920HDC/@@download/ENCFF920HDC.bed.gz hg19 released low read length, low read depth ENCFF042EYI bigBed narrowPeak optimal idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF920HDC 76622 ENCODE Processing Pipeline 25533cef1170858f8481426bbc91cb38 https://www.encodeproject.org/files/ENCFF042EYI/@@download/ENCFF042EYI.bigBed hg19 released low read length, low read depth ENCFF438QAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1, 3 ENCFF235AEB 72615 ENCODE Processing Pipeline 680af46a62a05e0fa4d72b49eeaebd7a https://www.encodeproject.org/files/ENCFF438QAQ/@@download/ENCFF438QAQ.bigBed hg19 released low read length, low read depth ENCFF783NLA fastq reads ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF202RSF 3913846063 Michael Snyder, Stanford 027a92836d389272c85c9950a85e095c SRA:SRR5111845 https://www.encodeproject.org/files/ENCFF783NLA/@@download/ENCFF783NLA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF202RSF fastq reads ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF783NLA 3913029365 Michael Snyder, Stanford 09a3042c645fa1f001d6cee11f2025bb SRA:SRR5111845 https://www.encodeproject.org/files/ENCFF202RSF/@@download/ENCFF202RSF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF029VAX fastq reads ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF251KLG 3189587571 Michael Snyder, Stanford cadc5c1cebab2f6da65647b094176a2e SRA:SRR5111844 https://www.encodeproject.org/files/ENCFF029VAX/@@download/ENCFF029VAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF251KLG fastq reads ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF029VAX 3192598843 Michael Snyder, Stanford ef1a6b8ed5a9fdfe91e5bf06e2dc2c9c SRA:SRR5111844 https://www.encodeproject.org/files/ENCFF251KLG/@@download/ENCFF251KLG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF404ZII bam unfiltered alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF029VAX, ENCFF251KLG, ENCFF807MUK 6360484177 ENCODE Processing Pipeline d3b019b69832bee73db281d926d02c3f https://www.encodeproject.org/files/ENCFF404ZII/@@download/ENCFF404ZII.bam hg19 released missing genetic modification characterization missing control alignments ENCFF931UNE bam unfiltered alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF029VAX, ENCFF251KLG, ENCFF643CGH 6368145136 ENCODE Processing Pipeline e9cbd042662ee328d863d6b82d6c06d4 https://www.encodeproject.org/files/ENCFF931UNE/@@download/ENCFF931UNE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF953SZP bam unfiltered alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF202RSF, ENCFF783NLA, ENCFF807MUK 7647220128 ENCODE Processing Pipeline 44fa0ff7db2931a7b6318cfae0c99696 https://www.encodeproject.org/files/ENCFF953SZP/@@download/ENCFF953SZP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF294YEJ bam unfiltered alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF202RSF, ENCFF643CGH, ENCFF783NLA 7655853851 ENCODE Processing Pipeline e86056054e4e425a2fc6616f439ce628 https://www.encodeproject.org/files/ENCFF294YEJ/@@download/ENCFF294YEJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF338OPD bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF029VAX, ENCFF251KLG, ENCFF807MUK 5617424938 ENCODE Processing Pipeline 4117fc9f49dfed0d711c6aa83e15dc0a https://www.encodeproject.org/files/ENCFF338OPD/@@download/ENCFF338OPD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF948DEA bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF029VAX, ENCFF251KLG, ENCFF643CGH 5621946424 ENCODE Processing Pipeline f76f2bfb06565866986d56da2a7f77ae https://www.encodeproject.org/files/ENCFF948DEA/@@download/ENCFF948DEA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF282CAW bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF202RSF, ENCFF643CGH, ENCFF783NLA 6753830148 ENCODE Processing Pipeline 6c4316f3fbf9dd04e3f3653385f2797f https://www.encodeproject.org/files/ENCFF282CAW/@@download/ENCFF282CAW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF642PIG bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF202RSF, ENCFF783NLA, ENCFF807MUK 6749449237 ENCODE Processing Pipeline d90107573f4c77fd6c6f260988e75d27 https://www.encodeproject.org/files/ENCFF642PIG/@@download/ENCFF642PIG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF848VJP bigWig signal p-value ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF642PIG 1486404847 ENCODE Processing Pipeline 0076d6813cd24107e15b676036ac0d7b https://www.encodeproject.org/files/ENCFF848VJP/@@download/ENCFF848VJP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF760KRY bigWig signal p-value ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF338OPD 1281659335 ENCODE Processing Pipeline 7a667e5a4cea94e4e2057063bab1f979 https://www.encodeproject.org/files/ENCFF760KRY/@@download/ENCFF760KRY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF898LLB bigWig signal p-value ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF338OPD, ENCFF642PIG 1979565186 ENCODE Processing Pipeline e90c84dcf097a17ffa6ec9352491bfd4 https://www.encodeproject.org/files/ENCFF898LLB/@@download/ENCFF898LLB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF404QRK bigWig fold change over control ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF642PIG 1774315296 ENCODE Processing Pipeline b782b61d8830f67de96cc1e8272af640 https://www.encodeproject.org/files/ENCFF404QRK/@@download/ENCFF404QRK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF840ELR bigWig fold change over control ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF338OPD 1629357014 ENCODE Processing Pipeline b55a9d741fe35d1f0b37cc1da5b1b2d7 https://www.encodeproject.org/files/ENCFF840ELR/@@download/ENCFF840ELR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF603STH bigWig fold change over control ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF338OPD, ENCFF642PIG 2302396906 ENCODE Processing Pipeline e243cc1e179b4ccf4e24fd6e6418d56f https://www.encodeproject.org/files/ENCFF603STH/@@download/ENCFF603STH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF165IOO bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF642PIG 7206807 ENCODE Processing Pipeline 89cb6cd0ec53a18e6bba52c8a29eb475 https://www.encodeproject.org/files/ENCFF165IOO/@@download/ENCFF165IOO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF146RFU bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF338OPD 7059504 ENCODE Processing Pipeline e308ab9b00f074b9bdd6c2e1e3d5cf63 https://www.encodeproject.org/files/ENCFF146RFU/@@download/ENCFF146RFU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF152AGB bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF338OPD, ENCFF642PIG 7297311 ENCODE Processing Pipeline db5998c081700cebec365e9d5f0ee7a9 https://www.encodeproject.org/files/ENCFF152AGB/@@download/ENCFF152AGB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF916OUD bigBed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF165IOO 13449122 ENCODE Processing Pipeline 3f40e05d63d70e012475763903844830 https://www.encodeproject.org/files/ENCFF916OUD/@@download/ENCFF916OUD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF559TKN bigBed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF146RFU 11307952 ENCODE Processing Pipeline 22d86f9a6044eaed25b0cabcbbe0a255 https://www.encodeproject.org/files/ENCFF559TKN/@@download/ENCFF559TKN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF404XDX bigBed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF152AGB 13425542 ENCODE Processing Pipeline 061753f14bc4afa869893a2e0273f389 https://www.encodeproject.org/files/ENCFF404XDX/@@download/ENCFF404XDX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF180XLV bed narrowPeak conservative idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF146RFU, ENCFF152AGB, ENCFF165IOO 366093 ENCODE Processing Pipeline 996ad960cb687a04838abf9540386676 https://www.encodeproject.org/files/ENCFF180XLV/@@download/ENCFF180XLV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF138TCQ bigBed narrowPeak conservative idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF180XLV 642557 ENCODE Processing Pipeline e414be1eade39972c30af5e6e38a876d https://www.encodeproject.org/files/ENCFF138TCQ/@@download/ENCFF138TCQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF925JLQ bed narrowPeak optimal idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF146RFU, ENCFF152AGB, ENCFF165IOO 499109 ENCODE Processing Pipeline af9f4d4445c5d2ba167fac3f5c784ed5 https://www.encodeproject.org/files/ENCFF925JLQ/@@download/ENCFF925JLQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF563AJM bigBed narrowPeak optimal idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF925JLQ 997277 ENCODE Processing Pipeline 454be6fefdc761b0a83418fd36fda645 https://www.encodeproject.org/files/ENCFF563AJM/@@download/ENCFF563AJM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF338VRM bigWig signal p-value ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF282CAW 1500986971 ENCODE Processing Pipeline db71d27a1db32718d33a108979fba5fe https://www.encodeproject.org/files/ENCFF338VRM/@@download/ENCFF338VRM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF099XUU bigWig signal p-value ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF948DEA 1527406302 ENCODE Processing Pipeline c7348e4743c01a94f07af5304ea39c41 https://www.encodeproject.org/files/ENCFF099XUU/@@download/ENCFF099XUU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF329JJU bigWig signal p-value ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF282CAW, ENCFF948DEA 1981060424 ENCODE Processing Pipeline 02876d9f921e2ef48393425fa3488611 https://www.encodeproject.org/files/ENCFF329JJU/@@download/ENCFF329JJU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF105AJC bigWig fold change over control ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF282CAW 1796744420 ENCODE Processing Pipeline 2447eb8bb1869980abe93b5b22a807d8 https://www.encodeproject.org/files/ENCFF105AJC/@@download/ENCFF105AJC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF945YRO bigWig fold change over control ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF948DEA 1629799857 ENCODE Processing Pipeline 0b16216ecaa8d15943b59fe26b3cc330 https://www.encodeproject.org/files/ENCFF945YRO/@@download/ENCFF945YRO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF052NHH bigWig fold change over control ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF282CAW, ENCFF948DEA 2302771721 ENCODE Processing Pipeline c074f02cf6ca67040b7d894a23d3848b https://www.encodeproject.org/files/ENCFF052NHH/@@download/ENCFF052NHH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF065BKV bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF282CAW, ENCFF948DEA 7294640 ENCODE Processing Pipeline 08661912dcbc814e5b53f04236ee369f https://www.encodeproject.org/files/ENCFF065BKV/@@download/ENCFF065BKV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF419ZQQ bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF948DEA 6970356 ENCODE Processing Pipeline e49e6fb80b63d46928e161cc6b7b3014 https://www.encodeproject.org/files/ENCFF419ZQQ/@@download/ENCFF419ZQQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF087JKC bigBed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF983EER 13442437 ENCODE Processing Pipeline 0403597ba24050ad544d58c5310f6fd6 https://www.encodeproject.org/files/ENCFF087JKC/@@download/ENCFF087JKC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF983EER bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF282CAW 7152827 ENCODE Processing Pipeline 00186eb2915c053508e5d56c352b3eb3 https://www.encodeproject.org/files/ENCFF983EER/@@download/ENCFF983EER.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF199JUJ bigBed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF065BKV 13436247 ENCODE Processing Pipeline f6d4f7ef5e7c76969708538cc832f956 https://www.encodeproject.org/files/ENCFF199JUJ/@@download/ENCFF199JUJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF313FUW bigBed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF419ZQQ 11316242 ENCODE Processing Pipeline 29b597e7bf1cd95c481e8f17a20b3c92 https://www.encodeproject.org/files/ENCFF313FUW/@@download/ENCFF313FUW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF491VHJ bed narrowPeak conservative idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF065BKV, ENCFF419RSJ, ENCFF419ZQQ, ENCFF983EER 368508 ENCODE Processing Pipeline cec93994c7e80e932ee56ca75e602da7 https://www.encodeproject.org/files/ENCFF491VHJ/@@download/ENCFF491VHJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF592YYO bigBed narrowPeak conservative idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF491VHJ 645902 ENCODE Processing Pipeline 8acac67cdd9fbe62aa91b28e9c72696d https://www.encodeproject.org/files/ENCFF592YYO/@@download/ENCFF592YYO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF878TBF bigBed narrowPeak optimal idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF799CAL 984992 ENCODE Processing Pipeline 9211a41aaa7a6f1154eb586f76161ef7 https://www.encodeproject.org/files/ENCFF878TBF/@@download/ENCFF878TBF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF799CAL bed narrowPeak optimal idr thresholded peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF065BKV, ENCFF419RSJ, ENCFF419ZQQ, ENCFF983EER 490494 ENCODE Processing Pipeline cd8586ccc5288d582ba742e4417a8e8b https://www.encodeproject.org/files/ENCFF799CAL/@@download/ENCFF799CAL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF758VSS fastq reads ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF234PZS 3186389334 Michael Snyder, Stanford 81ef69105237c7a842d8a9b944767221 https://www.encodeproject.org/files/ENCFF758VSS/@@download/ENCFF758VSS.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released experiment not submitted to GEO partially characterized antibody ENCFF234PZS fastq reads ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF758VSS 3225551348 Michael Snyder, Stanford d222206853e29cfb066a635b4448994f https://www.encodeproject.org/files/ENCFF234PZS/@@download/ENCFF234PZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released experiment not submitted to GEO partially characterized antibody ENCFF275AJE fastq reads ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF939BBH 3392574779 Michael Snyder, Stanford 9121e925c88025b009d3a14fa5920f71 https://www.encodeproject.org/files/ENCFF275AJE/@@download/ENCFF275AJE.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released experiment not submitted to GEO partially characterized antibody ENCFF939BBH fastq reads ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF275AJE 3436233411 Michael Snyder, Stanford aa4c04f9dba6fa6c69bd9c1b27dad7dd https://www.encodeproject.org/files/ENCFF939BBH/@@download/ENCFF939BBH.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released experiment not submitted to GEO partially characterized antibody ENCFF050VKA bam unfiltered alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 100 ENCFF234PZS, ENCFF758VSS, ENCFF807MUK 6779349218 ENCODE Processing Pipeline 82e6f25359ed9edd64438a4d19134dc7 https://www.encodeproject.org/files/ENCFF050VKA/@@download/ENCFF050VKA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF384LZB bam unfiltered alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 100 ENCFF234PZS, ENCFF643CGH, ENCFF758VSS 6783833273 ENCODE Processing Pipeline 0de0629744109ff34abdff9798323be1 https://www.encodeproject.org/files/ENCFF384LZB/@@download/ENCFF384LZB.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF327BFX bam unfiltered alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 100 ENCFF275AJE, ENCFF807MUK, ENCFF939BBH 7155764842 ENCODE Processing Pipeline e90eef24b35d4d16eef96332b330a91f https://www.encodeproject.org/files/ENCFF327BFX/@@download/ENCFF327BFX.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF452WBT bam unfiltered alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 100 ENCFF275AJE, ENCFF643CGH, ENCFF939BBH 7160130952 ENCODE Processing Pipeline 4ecbb7afb20fdb4e12343de0e325b03b https://www.encodeproject.org/files/ENCFF452WBT/@@download/ENCFF452WBT.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF509AXN bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 100 ENCFF234PZS, ENCFF643CGH, ENCFF758VSS 4826283217 ENCODE Processing Pipeline 0f68f7a068ea965667cfdc56ad32ea3a https://www.encodeproject.org/files/ENCFF509AXN/@@download/ENCFF509AXN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF331VSA bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 100 ENCFF234PZS, ENCFF758VSS, ENCFF807MUK 4823353553 ENCODE Processing Pipeline c3e8c2163f517f0ad54f0ffa3b268242 https://www.encodeproject.org/files/ENCFF331VSA/@@download/ENCFF331VSA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF817XAJ bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 100 ENCFF275AJE, ENCFF807MUK, ENCFF939BBH 5203169099 ENCODE Processing Pipeline 12277ca989dc808dccc82d216424409c https://www.encodeproject.org/files/ENCFF817XAJ/@@download/ENCFF817XAJ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF983MYK bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 100 ENCFF275AJE, ENCFF643CGH, ENCFF939BBH 5206593686 ENCODE Processing Pipeline 922615bedd95de22bd4482a1fdf66b40 https://www.encodeproject.org/files/ENCFF983MYK/@@download/ENCFF983MYK.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF366VCO bigWig signal p-value ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF817XAJ 1336892857 ENCODE Processing Pipeline 287b5b036966eb0c588a9f0161badebd https://www.encodeproject.org/files/ENCFF366VCO/@@download/ENCFF366VCO.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF738ALR bigWig fold change over control ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV 1290924829 ENCODE Processing Pipeline 1883e115abf30a359c14bd36daf424ce https://www.encodeproject.org/files/ENCFF738ALR/@@download/ENCFF738ALR.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF886HBR bigBed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF752PUJ 13445077 ENCODE Processing Pipeline e021489b86d90a9136f9d7ce720f3f75 https://www.encodeproject.org/files/ENCFF886HBR/@@download/ENCFF886HBR.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF447ZIL bigWig fold change over control ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF817XAJ 1320346906 ENCODE Processing Pipeline d659f40e122195b78d5227c0d6477f02 https://www.encodeproject.org/files/ENCFF447ZIL/@@download/ENCFF447ZIL.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF732WVL bigWig signal p-value ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV, ENCFF817XAJ 1746454156 ENCODE Processing Pipeline 3004c702655a59923532d4c732eabbf5 https://www.encodeproject.org/files/ENCFF732WVL/@@download/ENCFF732WVL.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF530KHY bigWig signal p-value ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV 1193606758 ENCODE Processing Pipeline 9a01b81c13433de43b4fbc71ec7f677a https://www.encodeproject.org/files/ENCFF530KHY/@@download/ENCFF530KHY.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF394QGN bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV, ENCFF817XAJ 7124209 ENCODE Processing Pipeline e54dd68212518fc5642a3447c1c01d47 https://www.encodeproject.org/files/ENCFF394QGN/@@download/ENCFF394QGN.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF294HEI bed narrowPeak optimal idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF394QGN, ENCFF443DXB, ENCFF752PUJ 521743 ENCODE Processing Pipeline 0cf5614471526e753fbc503179bba328 https://www.encodeproject.org/files/ENCFF294HEI/@@download/ENCFF294HEI.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF251XOX bigWig fold change over control ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV, ENCFF817XAJ 1845740358 ENCODE Processing Pipeline 8b15edc7cb8348be02f747b36b93e4ea https://www.encodeproject.org/files/ENCFF251XOX/@@download/ENCFF251XOX.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF443DXB bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF817XAJ 6804835 ENCODE Processing Pipeline 6b8959a7b8a8c771004bde83f0b6a755 https://www.encodeproject.org/files/ENCFF443DXB/@@download/ENCFF443DXB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF752PUJ bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV 6735798 ENCODE Processing Pipeline a17e78b385eb53e4fe51aa779174fd22 https://www.encodeproject.org/files/ENCFF752PUJ/@@download/ENCFF752PUJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF086SYM bigBed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF443DXB 13437141 ENCODE Processing Pipeline 87f1b807067d97c520caf7e191739473 https://www.encodeproject.org/files/ENCFF086SYM/@@download/ENCFF086SYM.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF427GXG bigBed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF394QGN 13310367 ENCODE Processing Pipeline a1838b305bb64c498fabeaaf011411d2 https://www.encodeproject.org/files/ENCFF427GXG/@@download/ENCFF427GXG.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF548RXT bed narrowPeak conservative idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF394QGN, ENCFF443DXB, ENCFF752PUJ 470098 ENCODE Processing Pipeline 6660c8871a85839023bafa292125575b https://www.encodeproject.org/files/ENCFF548RXT/@@download/ENCFF548RXT.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF560NYE bigBed narrowPeak conservative idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF548RXT 997133 ENCODE Processing Pipeline 563135b301fb78ad678f15e2d5420c3f https://www.encodeproject.org/files/ENCFF560NYE/@@download/ENCFF560NYE.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF081GCL bigBed narrowPeak optimal idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF294HEI 1076623 ENCODE Processing Pipeline 981edeb0af15efdf8b4271a9e086a9b3 https://www.encodeproject.org/files/ENCFF081GCL/@@download/ENCFF081GCL.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF267TUK bigWig fold change over control ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF720AUK, ENCFF796JTX, ENCFF983MYK 1341355880 ENCODE Processing Pipeline 4d3ed0b44b7248d7d5e3d7e3a62c048f https://www.encodeproject.org/files/ENCFF267TUK/@@download/ENCFF267TUK.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF361AFP bigWig signal p-value ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF509AXN, ENCFF720AUK, ENCFF796JTX 1246293306 ENCODE Processing Pipeline 8198fb693cf2cf01e35ac79d27058046 https://www.encodeproject.org/files/ENCFF361AFP/@@download/ENCFF361AFP.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF067HVB bigWig signal p-value ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF509AXN, ENCFF720AUK, ENCFF796JTX, ENCFF983MYK 1751708642 ENCODE Processing Pipeline ccab63625bc515cdb7167597ae6a33b8 https://www.encodeproject.org/files/ENCFF067HVB/@@download/ENCFF067HVB.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF874QGV bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF720AUK, ENCFF796JTX, ENCFF983MYK 6811910 ENCODE Processing Pipeline 838b0c3f4dc939929fe013184451533e https://www.encodeproject.org/files/ENCFF874QGV/@@download/ENCFF874QGV.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF393KKO bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF509AXN, ENCFF720AUK, ENCFF796JTX, ENCFF983MYK 7137438 ENCODE Processing Pipeline 0ab062cf4aa1bd5c0e21c42ac9a29b24 https://www.encodeproject.org/files/ENCFF393KKO/@@download/ENCFF393KKO.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF121LWG bigWig signal p-value ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF720AUK, ENCFF796JTX, ENCFF983MYK 1186060127 ENCODE Processing Pipeline 62f0b9a0090b911728eb057b5280934f https://www.encodeproject.org/files/ENCFF121LWG/@@download/ENCFF121LWG.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF361MCU bigBed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF874QGV 13454667 ENCODE Processing Pipeline 4d6fce492f54b3726577ccbee49e74fc https://www.encodeproject.org/files/ENCFF361MCU/@@download/ENCFF361MCU.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF712DMJ bigBed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF393KKO 13322996 ENCODE Processing Pipeline 3d5774f7233abd97956ef10d0a6fcb1f https://www.encodeproject.org/files/ENCFF712DMJ/@@download/ENCFF712DMJ.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF600HPZ bed narrowPeak optimal idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF393KKO, ENCFF419RSJ, ENCFF767BVK, ENCFF874QGV 527281 ENCODE Processing Pipeline ae29bd3ec6c79ce293dfcad35f2fd401 https://www.encodeproject.org/files/ENCFF600HPZ/@@download/ENCFF600HPZ.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF402NVL bigWig fold change over control ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF509AXN, ENCFF720AUK, ENCFF796JTX 1289066806 ENCODE Processing Pipeline 5079f1fd6eecfddc73f3f734a4e05c9e https://www.encodeproject.org/files/ENCFF402NVL/@@download/ENCFF402NVL.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF123SJW bigBed narrowPeak optimal idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF600HPZ 1085658 ENCODE Processing Pipeline c9da276f2eb71da7484668967b411e14 https://www.encodeproject.org/files/ENCFF123SJW/@@download/ENCFF123SJW.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF187MZK bigWig fold change over control ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF509AXN, ENCFF720AUK, ENCFF796JTX, ENCFF983MYK 1852465350 ENCODE Processing Pipeline 5fa939fdde83b4c0bcd46fae3cf91bee https://www.encodeproject.org/files/ENCFF187MZK/@@download/ENCFF187MZK.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF684GRR bigBed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF767BVK 13460870 ENCODE Processing Pipeline d244bd2d5b94ab1f9cfe908548555441 https://www.encodeproject.org/files/ENCFF684GRR/@@download/ENCFF684GRR.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF041AYU bed narrowPeak conservative idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF393KKO, ENCFF419RSJ, ENCFF767BVK, ENCFF874QGV 472341 ENCODE Processing Pipeline 00d72926f3b91ab91c6892eceb338ea2 https://www.encodeproject.org/files/ENCFF041AYU/@@download/ENCFF041AYU.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF767BVK bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF509AXN, ENCFF720AUK, ENCFF796JTX 6743941 ENCODE Processing Pipeline efd5067cae848dd339059b05165629a7 https://www.encodeproject.org/files/ENCFF767BVK/@@download/ENCFF767BVK.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF968TZC bigBed narrowPeak conservative idr thresholded peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF041AYU 1001055 ENCODE Processing Pipeline 6b6ac7134c36c55708f6da81e6848010 https://www.encodeproject.org/files/ENCFF968TZC/@@download/ENCFF968TZC.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF850KNY fastq reads ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 1 100 paired-ended 1 ENCFF037ZGC 2538174802 Michael Snyder, Stanford d35e2ab0a045e5f3055bbd84087d64d0 SRA:SRR6214062 https://www.encodeproject.org/files/ENCFF850KNY/@@download/ENCFF850KNY.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF037ZGC fastq reads ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 1 100 paired-ended 2 ENCFF850KNY 2548379685 Michael Snyder, Stanford b14b1e912c2df420cf826730c6956625 SRA:SRR6214062 https://www.encodeproject.org/files/ENCFF037ZGC/@@download/ENCFF037ZGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF087CSK fastq reads ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 1 100 paired-ended 1 ENCFF660QON 2719671971 Michael Snyder, Stanford b8de3c979ae370b49ead240a17fe99f0 SRA:SRR6214061 https://www.encodeproject.org/files/ENCFF087CSK/@@download/ENCFF087CSK.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF660QON fastq reads ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 1 100 paired-ended 2 ENCFF087CSK 2755357624 Michael Snyder, Stanford a57249c5438b9c1d64c68285930df2a9 SRA:SRR6214061 https://www.encodeproject.org/files/ENCFF660QON/@@download/ENCFF660QON.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF120BVV bam unfiltered alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 100 ENCFF087CSK, ENCFF660QON, ENCFF807MUK 5863818972 ENCODE Processing Pipeline 6a0edbd3f3fea6ac99d597d17b2afbf0 https://www.encodeproject.org/files/ENCFF120BVV/@@download/ENCFF120BVV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF467IBT bam unfiltered alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 100 ENCFF037ZGC, ENCFF643CGH, ENCFF850KNY 5369049828 ENCODE Processing Pipeline 93248e7679febfcf017ac875d7a70d61 https://www.encodeproject.org/files/ENCFF467IBT/@@download/ENCFF467IBT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF091KDD bam unfiltered alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 100 ENCFF037ZGC, ENCFF807MUK, ENCFF850KNY 5364886429 ENCODE Processing Pipeline 6a4fbb3ab63bc52bf7acfc0e23becabf https://www.encodeproject.org/files/ENCFF091KDD/@@download/ENCFF091KDD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF972DIA bam unfiltered alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 100 ENCFF087CSK, ENCFF643CGH, ENCFF660QON 5869318215 ENCODE Processing Pipeline b56649562166721cf235c7bb45f13ff7 https://www.encodeproject.org/files/ENCFF972DIA/@@download/ENCFF972DIA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF584YHO bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 100 ENCFF037ZGC, ENCFF807MUK, ENCFF850KNY 3956033575 ENCODE Processing Pipeline b9119e94f1746d3348b99fb68f38dffa https://www.encodeproject.org/files/ENCFF584YHO/@@download/ENCFF584YHO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF605ZNL bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 100 ENCFF037ZGC, ENCFF643CGH, ENCFF850KNY 3957569881 ENCODE Processing Pipeline 2ef874152bd0951701ee039df4548c28 https://www.encodeproject.org/files/ENCFF605ZNL/@@download/ENCFF605ZNL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF890PMJ bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 100 ENCFF087CSK, ENCFF660QON, ENCFF807MUK 4762761081 ENCODE Processing Pipeline 6ce5eda8f92bad464a098c283692fea6 https://www.encodeproject.org/files/ENCFF890PMJ/@@download/ENCFF890PMJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF347QZM bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 100 ENCFF087CSK, ENCFF643CGH, ENCFF660QON 4764930964 ENCODE Processing Pipeline 91961989d5223453588ac1d161f5305e https://www.encodeproject.org/files/ENCFF347QZM/@@download/ENCFF347QZM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF581MDP bigWig signal p-value ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO, ENCFF890PMJ 1843915179 ENCODE Processing Pipeline d08f9dbdae8494792cd58647995d6225 https://www.encodeproject.org/files/ENCFF581MDP/@@download/ENCFF581MDP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF261RAV bigBed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF700RYG 11222361 ENCODE Processing Pipeline 116e055582847a9889aa3cd261146ed1 https://www.encodeproject.org/files/ENCFF261RAV/@@download/ENCFF261RAV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF043YZF bed narrowPeak optimal idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF001TDO, ENCFF404ZDG, ENCFF700RYG, ENCFF804WBF 98778 ENCODE Processing Pipeline 35c35430c78f681d42182db300ec48a9 https://www.encodeproject.org/files/ENCFF043YZF/@@download/ENCFF043YZF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF393IEG bigWig signal p-value ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF890PMJ 1279507603 ENCODE Processing Pipeline 9fb10a1b4a485599adfdecf3a0e28307 https://www.encodeproject.org/files/ENCFF393IEG/@@download/ENCFF393IEG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF404ZDG bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO, ENCFF890PMJ 7160496 ENCODE Processing Pipeline e47da557586eb7ddb30ef039b8df8649 https://www.encodeproject.org/files/ENCFF404ZDG/@@download/ENCFF404ZDG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF702ZMH bigBed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF804WBF 11196716 ENCODE Processing Pipeline b7680528a32e266f8a66f498582f04f4 https://www.encodeproject.org/files/ENCFF702ZMH/@@download/ENCFF702ZMH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF866QXR bed narrowPeak conservative idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF001TDO, ENCFF404ZDG, ENCFF700RYG, ENCFF804WBF 54773 ENCODE Processing Pipeline 47d90eded93641d95bc5213ab6fa1047 https://www.encodeproject.org/files/ENCFF866QXR/@@download/ENCFF866QXR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF937DUT bigWig fold change over control ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF890PMJ 1422786814 ENCODE Processing Pipeline 18f7b2923971ced1aecc83a3c510a3f2 https://www.encodeproject.org/files/ENCFF937DUT/@@download/ENCFF937DUT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF384ZSB bigBed narrowPeak optimal idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF043YZF 241458 ENCODE Processing Pipeline 85098f58aa4c7802e9c3beea79933c8a https://www.encodeproject.org/files/ENCFF384ZSB/@@download/ENCFF384ZSB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF097ZER bigWig signal p-value ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO 1201218345 ENCODE Processing Pipeline 2778302d15e83976ccb0ba1e87364198 https://www.encodeproject.org/files/ENCFF097ZER/@@download/ENCFF097ZER.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF769QDG bigWig fold change over control ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO 1294934623 ENCODE Processing Pipeline 435377e27afc4673312f7d62283328a2 https://www.encodeproject.org/files/ENCFF769QDG/@@download/ENCFF769QDG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF772YTJ bigWig fold change over control ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO, ENCFF890PMJ 1874964888 ENCODE Processing Pipeline ab605f41e4e61d496217a4aaa0502f15 https://www.encodeproject.org/files/ENCFF772YTJ/@@download/ENCFF772YTJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF700RYG bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO 6326551 ENCODE Processing Pipeline d157d3b7aa72362fc82037deaf06629a https://www.encodeproject.org/files/ENCFF700RYG/@@download/ENCFF700RYG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF804WBF bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF890PMJ 6701862 ENCODE Processing Pipeline 88d61b687f13462c227585bd884c04b5 https://www.encodeproject.org/files/ENCFF804WBF/@@download/ENCFF804WBF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF254WHH bigBed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF404ZDG 11084589 ENCODE Processing Pipeline 5d77c8a57d678a07aec8ec83c7d3fe2d https://www.encodeproject.org/files/ENCFF254WHH/@@download/ENCFF254WHH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF561MCO bigBed narrowPeak conservative idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF866QXR 142471 ENCODE Processing Pipeline 6402c29d670e14a0ed6e7f2e518a50ab https://www.encodeproject.org/files/ENCFF561MCO/@@download/ENCFF561MCO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF013EPW bigWig signal p-value ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF605ZNL, ENCFF720AUK, ENCFF796JTX 1137919380 ENCODE Processing Pipeline 646e12147f0cea14240b514765452982 https://www.encodeproject.org/files/ENCFF013EPW/@@download/ENCFF013EPW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF766YHB bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF347QZM, ENCFF720AUK, ENCFF796JTX 6653869 ENCODE Processing Pipeline 7255a42d5a5bba6560efccff7c0b4158 https://www.encodeproject.org/files/ENCFF766YHB/@@download/ENCFF766YHB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF697VRJ bed narrowPeak optimal idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF419RSJ, ENCFF747MEJ, ENCFF766YHB, ENCFF928EZI 97013 ENCODE Processing Pipeline 8203a101e2dc74caa9c493c67dc0f0a3 https://www.encodeproject.org/files/ENCFF697VRJ/@@download/ENCFF697VRJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF870ESB bed narrowPeak conservative idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF419RSJ, ENCFF747MEJ, ENCFF766YHB, ENCFF928EZI 55075 ENCODE Processing Pipeline 773a0f440403aa0fb803e2df1da8c3bb https://www.encodeproject.org/files/ENCFF870ESB/@@download/ENCFF870ESB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF590ETQ bigBed narrowPeak optimal idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF697VRJ 239824 ENCODE Processing Pipeline 2495f09612e300d05d4b3b06d7d6ceb2 https://www.encodeproject.org/files/ENCFF590ETQ/@@download/ENCFF590ETQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF062YYB bigWig fold change over control ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF605ZNL, ENCFF720AUK, ENCFF796JTX 1277389971 ENCODE Processing Pipeline b4b17e918eadcf6c64646197ebcd0688 https://www.encodeproject.org/files/ENCFF062YYB/@@download/ENCFF062YYB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF846CMI bigWig signal p-value ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF347QZM, ENCFF605ZNL, ENCFF720AUK, ENCFF796JTX 1780550810 ENCODE Processing Pipeline 9442fa3e5abd0a837a791a72268ac26b https://www.encodeproject.org/files/ENCFF846CMI/@@download/ENCFF846CMI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF420RRI bigWig fold change over control ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF347QZM, ENCFF605ZNL, ENCFF720AUK, ENCFF796JTX 1879407589 ENCODE Processing Pipeline 0dd13337e879f2fc44b2e7a26d840dff https://www.encodeproject.org/files/ENCFF420RRI/@@download/ENCFF420RRI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF707EBN bigBed narrowPeak conservative idr thresholded peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF870ESB 143658 ENCODE Processing Pipeline be68d4015e9e5586df8823df3be5eb08 https://www.encodeproject.org/files/ENCFF707EBN/@@download/ENCFF707EBN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF081VHR bigWig signal p-value ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF347QZM, ENCFF720AUK, ENCFF796JTX 1286310265 ENCODE Processing Pipeline 56d79da2e923eeca75ded09991e47020 https://www.encodeproject.org/files/ENCFF081VHR/@@download/ENCFF081VHR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF311KSB bigWig fold change over control ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF347QZM, ENCFF720AUK, ENCFF796JTX 1431600851 ENCODE Processing Pipeline 114d53cc1ed85f5fde787cc4e1b57fdc https://www.encodeproject.org/files/ENCFF311KSB/@@download/ENCFF311KSB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF747MEJ bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF347QZM, ENCFF605ZNL, ENCFF720AUK, ENCFF796JTX 7168445 ENCODE Processing Pipeline 40736a7786f4be6af243861ae16bc42d https://www.encodeproject.org/files/ENCFF747MEJ/@@download/ENCFF747MEJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF632ULG bigBed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF928EZI 11249953 ENCODE Processing Pipeline cb2fbc8ff8e153eb9ea922a0a7abe285 https://www.encodeproject.org/files/ENCFF632ULG/@@download/ENCFF632ULG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF036POS bigBed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 ENCFF766YHB 11218612 ENCODE Processing Pipeline e03aac46cb1ab635b34a4055272e0e72 https://www.encodeproject.org/files/ENCFF036POS/@@download/ENCFF036POS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF779BZP bigBed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3, 4 ENCFF747MEJ 11101835 ENCODE Processing Pipeline b47a06145e447dfa22b4915c68451664 https://www.encodeproject.org/files/ENCFF779BZP/@@download/ENCFF779BZP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF928EZI bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 ENCFF605ZNL, ENCFF720AUK, ENCFF796JTX 6308944 ENCODE Processing Pipeline 54920115ba76224279fea8f416ac7332 https://www.encodeproject.org/files/ENCFF928EZI/@@download/ENCFF928EZI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF746HJM bam unfiltered alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDD, ENCFF807MUK 1342342682 ENCODE Processing Pipeline 7a22a3777da978d61fc627223365d990 https://www.encodeproject.org/files/ENCFF746HJM/@@download/ENCFF746HJM.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF321OPI bam unfiltered alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDL, ENCFF807MUK 1130478915 ENCODE Processing Pipeline bb1a21f6bba4d4186d4dae76a605349c https://www.encodeproject.org/files/ENCFF321OPI/@@download/ENCFF321OPI.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EDD fastq reads ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1088761192 Michael Snyder, Stanford fa458b93e1ffa96739eb0360f8fc3b50 https://www.encodeproject.org/files/ENCFF002EDD/@@download/ENCFF002EDD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECN/ released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002EDL fastq reads ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 902581408 Michael Snyder, Stanford 68dcdd8102fa76a2bbbeb64709503bff https://www.encodeproject.org/files/ENCFF002EDL/@@download/ENCFF002EDL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECO/ released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF407ZMZ bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDD, ENCFF807MUK 910437904 ENCODE Processing Pipeline ab78e7d7d00a745af9181c4d2f6e4f85 https://www.encodeproject.org/files/ENCFF407ZMZ/@@download/ENCFF407ZMZ.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF252WWC bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDL, ENCFF807MUK 789020340 ENCODE Processing Pipeline 47918ce17d6fe257c312a800260a5c78 https://www.encodeproject.org/files/ENCFF252WWC/@@download/ENCFF252WWC.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF398YHQ bigWig signal p-value ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF407ZMZ 636306121 ENCODE Processing Pipeline bb26a89f73051d4d741fcb0b4f324199 https://www.encodeproject.org/files/ENCFF398YHQ/@@download/ENCFF398YHQ.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF390ZKR bigWig signal p-value ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF252WWC, ENCFF316UXC, ENCFF407ZMZ, ENCFF939XHK 935461017 ENCODE Processing Pipeline a2877b5cef2fecf7c2b4b0c55d2457a9 https://www.encodeproject.org/files/ENCFF390ZKR/@@download/ENCFF390ZKR.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF980IVM bigWig fold change over control ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF407ZMZ 423739838 ENCODE Processing Pipeline 46fd97d7fc76c9ace2cd6b62272408ad https://www.encodeproject.org/files/ENCFF980IVM/@@download/ENCFF980IVM.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF454WZU bigWig fold change over control ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF252WWC, ENCFF316UXC, ENCFF407ZMZ, ENCFF939XHK 922784683 ENCODE Processing Pipeline e3564da5f322ec0905e7905c763067e3 https://www.encodeproject.org/files/ENCFF454WZU/@@download/ENCFF454WZU.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF098SEH bam unfiltered alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDD, ENCFF643CGH 1348928861 ENCODE Processing Pipeline 75214cb08424abb8adfed1f0dace4f42 https://www.encodeproject.org/files/ENCFF098SEH/@@download/ENCFF098SEH.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF740DJC bam unfiltered alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDL, ENCFF643CGH 1136663446 ENCODE Processing Pipeline 81b5cf9b5898a10a934cedec92bce25c https://www.encodeproject.org/files/ENCFF740DJC/@@download/ENCFF740DJC.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF466OUZ bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDL, ENCFF643CGH 788679718 ENCODE Processing Pipeline 659b4dda969294a7f711bb55bd1a979c https://www.encodeproject.org/files/ENCFF466OUZ/@@download/ENCFF466OUZ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF210QWJ bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDD, ENCFF643CGH 910031556 ENCODE Processing Pipeline 23d0663afaf6d39023044a4aeec46591 https://www.encodeproject.org/files/ENCFF210QWJ/@@download/ENCFF210QWJ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF467FZY bigWig signal p-value ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF210QWJ, ENCFF459QXO 544076173 ENCODE Processing Pipeline 038e2e19b8823efee876d06f9b598eeb https://www.encodeproject.org/files/ENCFF467FZY/@@download/ENCFF467FZY.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF955VYF bigWig signal p-value ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF466OUZ, ENCFF714ZPY 522763837 ENCODE Processing Pipeline bab28813816a82f0102fe2eaeaa498c7 https://www.encodeproject.org/files/ENCFF955VYF/@@download/ENCFF955VYF.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF994RHN bigWig signal p-value ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF210QWJ, ENCFF459QXO, ENCFF466OUZ, ENCFF714ZPY 986394937 ENCODE Processing Pipeline 77019e4df9663f5fb3716e7f0061e0f1 https://www.encodeproject.org/files/ENCFF994RHN/@@download/ENCFF994RHN.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF409SKK bigBed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF461AMQ 10588396 ENCODE Processing Pipeline a80cc144c5f3a55ad479d85fb032ca43 https://www.encodeproject.org/files/ENCFF409SKK/@@download/ENCFF409SKK.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF680AMS bigWig fold change over control ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF210QWJ, ENCFF459QXO 423601934 ENCODE Processing Pipeline 615c57fd7798704b7159492e42a8e325 https://www.encodeproject.org/files/ENCFF680AMS/@@download/ENCFF680AMS.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF125TNP bigBed narrowPeak conservative idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF179BYY 145003 ENCODE Processing Pipeline 2b610440e10959b1ce9286b45df0a72f https://www.encodeproject.org/files/ENCFF125TNP/@@download/ENCFF125TNP.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF131KXO bigWig fold change over control ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF466OUZ, ENCFF714ZPY 401582433 ENCODE Processing Pipeline 29aa52ff81f9e5a66332ee687b9177c3 https://www.encodeproject.org/files/ENCFF131KXO/@@download/ENCFF131KXO.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF429XQI bed narrowPeak optimal idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF280BJI, ENCFF419RSJ, ENCFF461AMQ, ENCFF810XCD 62685 ENCODE Processing Pipeline c80c3182503410a6ef5c34d81d577eb0 https://www.encodeproject.org/files/ENCFF429XQI/@@download/ENCFF429XQI.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF600GRJ bigBed narrowPeak optimal idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF429XQI 154148 ENCODE Processing Pipeline 13d39260249b93761667d08300fb4b2a https://www.encodeproject.org/files/ENCFF600GRJ/@@download/ENCFF600GRJ.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF810XCD bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF210QWJ, ENCFF459QXO, ENCFF466OUZ, ENCFF714ZPY 5756042 ENCODE Processing Pipeline eb26686f129aa34560cf7f238ac6799e https://www.encodeproject.org/files/ENCFF810XCD/@@download/ENCFF810XCD.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF940YAF bigWig fold change over control ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF210QWJ, ENCFF459QXO, ENCFF466OUZ, ENCFF714ZPY 921350609 ENCODE Processing Pipeline 08d6cbec866a79dbc5acc6d6529ad88e https://www.encodeproject.org/files/ENCFF940YAF/@@download/ENCFF940YAF.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF280BJI bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF466OUZ, ENCFF714ZPY 4551514 ENCODE Processing Pipeline 046b44f7cff197fa98bb99fdeffbf6c6 https://www.encodeproject.org/files/ENCFF280BJI/@@download/ENCFF280BJI.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF988QFK bigBed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF280BJI 10835095 ENCODE Processing Pipeline dd8c61d0b2509e930118a004c1334aae https://www.encodeproject.org/files/ENCFF988QFK/@@download/ENCFF988QFK.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF837APB bigBed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF810XCD 11321511 ENCODE Processing Pipeline 6e24cb4d1ea4f41d9b0a9535f3779511 https://www.encodeproject.org/files/ENCFF837APB/@@download/ENCFF837APB.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF461AMQ bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF210QWJ, ENCFF459QXO 4058330 ENCODE Processing Pipeline e3bd572a56433fe7e6166b0fd78ff416 https://www.encodeproject.org/files/ENCFF461AMQ/@@download/ENCFF461AMQ.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF179BYY bed narrowPeak conservative idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF280BJI, ENCFF419RSJ, ENCFF461AMQ, ENCFF810XCD 51865 ENCODE Processing Pipeline 3699c0269f5e7f01bd1fac2131b11154 https://www.encodeproject.org/files/ENCFF179BYY/@@download/ENCFF179BYY.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF349UUA bigWig signal p-value ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF252WWC, ENCFF939XHK 524965240 ENCODE Processing Pipeline 6fc6bfdbf29ca765a3c87bc68aa744e2 https://www.encodeproject.org/files/ENCFF349UUA/@@download/ENCFF349UUA.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF971NCA bigWig fold change over control ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF252WWC, ENCFF939XHK 403689602 ENCODE Processing Pipeline d242576e0e9598576c778cc4c5893d64 https://www.encodeproject.org/files/ENCFF971NCA/@@download/ENCFF971NCA.bigWig hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF979YOQ bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF252WWC, ENCFF939XHK 4558384 ENCODE Processing Pipeline d67f7c6f60c7ce8334aed5c21272da2e https://www.encodeproject.org/files/ENCFF979YOQ/@@download/ENCFF979YOQ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF233ITG bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF252WWC, ENCFF316UXC, ENCFF407ZMZ, ENCFF939XHK 5855620 ENCODE Processing Pipeline 62da1f150d87cad5ed004706c66b1773 https://www.encodeproject.org/files/ENCFF233ITG/@@download/ENCFF233ITG.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF491ZMR bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF407ZMZ 4054862 ENCODE Processing Pipeline 973d1132b60ecc98df357eb532c91f46 https://www.encodeproject.org/files/ENCFF491ZMR/@@download/ENCFF491ZMR.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF525HCK bigBed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF233ITG 11314662 ENCODE Processing Pipeline ebdbdcbe0ea40a16987532b5f078172b https://www.encodeproject.org/files/ENCFF525HCK/@@download/ENCFF525HCK.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF481XAZ bed narrowPeak conservative idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF233ITG, ENCFF491ZMR, ENCFF979YOQ 51517 ENCODE Processing Pipeline 8ebcaec7887a535922654a1d6fbee699 https://www.encodeproject.org/files/ENCFF481XAZ/@@download/ENCFF481XAZ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF626NOM bigBed narrowPeak conservative idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF481XAZ 137051 ENCODE Processing Pipeline 033ef20def0f05a477c93cfa5e7c2194 https://www.encodeproject.org/files/ENCFF626NOM/@@download/ENCFF626NOM.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF585QFK bigBed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF491ZMR 10580794 ENCODE Processing Pipeline 270f38abaefa9e3d9fdc7c17b502f128 https://www.encodeproject.org/files/ENCFF585QFK/@@download/ENCFF585QFK.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF311JCB bigBed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 ENCFF979YOQ 10825268 ENCODE Processing Pipeline ab0cdcfa40e114ef44003e8515d16bb7 https://www.encodeproject.org/files/ENCFF311JCB/@@download/ENCFF311JCB.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF789ZEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF640ORY 151158 ENCODE Processing Pipeline ba8863004a90d9fd48385ba2477d32f7 https://www.encodeproject.org/files/ENCFF789ZEJ/@@download/ENCFF789ZEJ.bigBed hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF640ORY bed narrowPeak optimal idr thresholded peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF233ITG, ENCFF491ZMR, ENCFF979YOQ 61240 ENCODE Processing Pipeline 9e4bcfd497cd57be71e9c3fccf8aba30 https://www.encodeproject.org/files/ENCFF640ORY/@@download/ENCFF640ORY.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF991IIZ fastq reads ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF525CDJ 3327481810 Michael Snyder, Stanford f6b92fb09118fd59c7528c02a2688ddd SRA:SRR5112013 https://www.encodeproject.org/files/ENCFF991IIZ/@@download/ENCFF991IIZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF051TFE fastq reads ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF102GYW 2811544161 Michael Snyder, Stanford 8cf8cf2d51a922bb1d5e7febbfaad2ea SRA:SRR5112014 https://www.encodeproject.org/files/ENCFF051TFE/@@download/ENCFF051TFE.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF525CDJ fastq reads ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF991IIZ 3516490222 Michael Snyder, Stanford 1ddba745794a122b2ed53a8ce82d8593 SRA:SRR5112013 https://www.encodeproject.org/files/ENCFF525CDJ/@@download/ENCFF525CDJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF102GYW fastq reads ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF051TFE 2956772092 Michael Snyder, Stanford 5710a5fd57150edfb10d6f87381ec495 SRA:SRR5112014 https://www.encodeproject.org/files/ENCFF102GYW/@@download/ENCFF102GYW.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF632HMY bam unfiltered alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF525CDJ, ENCFF807MUK, ENCFF991IIZ 6748145843 ENCODE Processing Pipeline 353b4eed99ad8b4658d93fdba19c912d https://www.encodeproject.org/files/ENCFF632HMY/@@download/ENCFF632HMY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF881OJW bam unfiltered alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF051TFE, ENCFF102GYW, ENCFF643CGH 5798913593 ENCODE Processing Pipeline ce57353c5747aa1ea63c580b411b36ae https://www.encodeproject.org/files/ENCFF881OJW/@@download/ENCFF881OJW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF486MUN bam unfiltered alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF051TFE, ENCFF102GYW, ENCFF807MUK 5791259022 ENCODE Processing Pipeline 30e8326598d1be2e5173cea829fc7794 https://www.encodeproject.org/files/ENCFF486MUN/@@download/ENCFF486MUN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF185JWO bam unfiltered alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF525CDJ, ENCFF643CGH, ENCFF991IIZ 6756801546 ENCODE Processing Pipeline 7f3d259b93c489740a927d642a10d033 https://www.encodeproject.org/files/ENCFF185JWO/@@download/ENCFF185JWO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF132TRH bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF051TFE, ENCFF102GYW, ENCFF807MUK 4693486893 ENCODE Processing Pipeline ef0d1381032962bd42c91548357d4a78 https://www.encodeproject.org/files/ENCFF132TRH/@@download/ENCFF132TRH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF028BVH bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF051TFE, ENCFF102GYW, ENCFF643CGH 4696777914 ENCODE Processing Pipeline 0957739c8ed3c5e23b2857ff45d3129b https://www.encodeproject.org/files/ENCFF028BVH/@@download/ENCFF028BVH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF422TQA bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF525CDJ, ENCFF807MUK, ENCFF991IIZ 5453255915 ENCODE Processing Pipeline 27eab9fb645512069d9dc9075023cbc1 https://www.encodeproject.org/files/ENCFF422TQA/@@download/ENCFF422TQA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF690XBP bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF525CDJ, ENCFF643CGH, ENCFF991IIZ 5456741657 ENCODE Processing Pipeline d46d94651a4efa051e254fa89c9150a4 https://www.encodeproject.org/files/ENCFF690XBP/@@download/ENCFF690XBP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF981BJX bigWig signal p-value ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF132TRH, ENCFF182WHU 1409337222 ENCODE Processing Pipeline 6030c7282fdda4ad82c8efe79a73a6df https://www.encodeproject.org/files/ENCFF981BJX/@@download/ENCFF981BJX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF434NSZ bigWig signal p-value ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF422TQA 1650727436 ENCODE Processing Pipeline a8a115e1510af681676e65802b4eb45a https://www.encodeproject.org/files/ENCFF434NSZ/@@download/ENCFF434NSZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF131VHW bigWig fold change over control ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF132TRH, ENCFF182WHU 1699691997 ENCODE Processing Pipeline 89fa4e3f3af7ca5ff77acd2c7a6e8738 https://www.encodeproject.org/files/ENCFF131VHW/@@download/ENCFF131VHW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF077KPK bigWig signal p-value ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF132TRH, ENCFF182WHU, ENCFF422TQA 1944702395 ENCODE Processing Pipeline 01b87d767ea57f7b54e2b8940d4d15a0 https://www.encodeproject.org/files/ENCFF077KPK/@@download/ENCFF077KPK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF388IWU bigBed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF670NPG 13130930 ENCODE Processing Pipeline 1bb59375a800cb0df4abdc066f139037 https://www.encodeproject.org/files/ENCFF388IWU/@@download/ENCFF388IWU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF629XQO bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF132TRH, ENCFF182WHU, ENCFF422TQA 7336045 ENCODE Processing Pipeline 231a465858a9d6a868c83ed9214ad2a2 https://www.encodeproject.org/files/ENCFF629XQO/@@download/ENCFF629XQO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF670NPG bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF422TQA 7274116 ENCODE Processing Pipeline 01616fbf224c6fb0449cc7aaf6a20e1c https://www.encodeproject.org/files/ENCFF670NPG/@@download/ENCFF670NPG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF556XHK bigBed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF922DZD 13177356 ENCODE Processing Pipeline d3420cd662b5344674dbdbbdfeb2d9e2 https://www.encodeproject.org/files/ENCFF556XHK/@@download/ENCFF556XHK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF478ZDM bigWig fold change over control ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF422TQA 1856874949 ENCODE Processing Pipeline 428834dc6968f05cd575c3ceed6e9c23 https://www.encodeproject.org/files/ENCFF478ZDM/@@download/ENCFF478ZDM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF837LSG bigWig fold change over control ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF132TRH, ENCFF182WHU, ENCFF422TQA 2406397726 ENCODE Processing Pipeline d01955a8a8e522987b71b0c52254e0bd https://www.encodeproject.org/files/ENCFF837LSG/@@download/ENCFF837LSG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF922DZD bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF132TRH, ENCFF182WHU 7215265 ENCODE Processing Pipeline dcb2e55d24319300d5ed986e1bc10247 https://www.encodeproject.org/files/ENCFF922DZD/@@download/ENCFF922DZD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF357MFH bigBed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF629XQO 13077636 ENCODE Processing Pipeline 31d5c9dbd7134321eac20254928de46e https://www.encodeproject.org/files/ENCFF357MFH/@@download/ENCFF357MFH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF399ZBL bigBed narrowPeak optimal idr thresholded peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF107VFO 950337 ENCODE Processing Pipeline 431337eb0566c22d026683266c22e94a https://www.encodeproject.org/files/ENCFF399ZBL/@@download/ENCFF399ZBL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF266BYW bigBed narrowPeak conservative idr thresholded peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF454PDU 829300 ENCODE Processing Pipeline dd6862d0c5fbb5b274c6b2b4f4f78734 https://www.encodeproject.org/files/ENCFF266BYW/@@download/ENCFF266BYW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF454PDU bed narrowPeak conservative idr thresholded peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF629XQO, ENCFF670NPG, ENCFF922DZD 439590 ENCODE Processing Pipeline df66b2880f5fd3570cbdc4a23521d998 https://www.encodeproject.org/files/ENCFF454PDU/@@download/ENCFF454PDU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF107VFO bed narrowPeak optimal idr thresholded peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF629XQO, ENCFF670NPG, ENCFF922DZD 518854 ENCODE Processing Pipeline 7a3f22115cf0be3887d223956fb9f1d5 https://www.encodeproject.org/files/ENCFF107VFO/@@download/ENCFF107VFO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF636GIO bigWig signal p-value ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF690XBP, ENCFF810LLR 1798599575 ENCODE Processing Pipeline 716130d9980bb780d37324c27879b6ff https://www.encodeproject.org/files/ENCFF636GIO/@@download/ENCFF636GIO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF329VFX bigWig signal p-value ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF028BVH, ENCFF810LLR 1588390380 ENCODE Processing Pipeline 5f116ff53b8636bdc098b063c23c4275 https://www.encodeproject.org/files/ENCFF329VFX/@@download/ENCFF329VFX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF020NLC bigWig fold change over control ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF690XBP, ENCFF810LLR 1859747263 ENCODE Processing Pipeline a303b0b4854dfab43be77a614a349bfd https://www.encodeproject.org/files/ENCFF020NLC/@@download/ENCFF020NLC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF708PMK bigWig signal p-value ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF028BVH, ENCFF690XBP, ENCFF810LLR 1932144970 ENCODE Processing Pipeline 8d433d7c3ba1886bfca164a2461b0862 https://www.encodeproject.org/files/ENCFF708PMK/@@download/ENCFF708PMK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF516UYH bigWig fold change over control ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF028BVH, ENCFF810LLR 1702802312 ENCODE Processing Pipeline f2fd93734d9713b9d03563d02e9105f7 https://www.encodeproject.org/files/ENCFF516UYH/@@download/ENCFF516UYH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF869XYH bigWig fold change over control ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF028BVH, ENCFF690XBP, ENCFF810LLR 2395561133 ENCODE Processing Pipeline fd7a127fe1bd7a119f9f57435de40bbb https://www.encodeproject.org/files/ENCFF869XYH/@@download/ENCFF869XYH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF477WXR bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF028BVH, ENCFF690XBP, ENCFF810LLR 7330490 ENCODE Processing Pipeline 73bc6b6613e880e6e812cab9c8460b7b https://www.encodeproject.org/files/ENCFF477WXR/@@download/ENCFF477WXR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF301HHV bigBed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF136URK 13136028 ENCODE Processing Pipeline 7d83c91def090539ad492837f3095ba8 https://www.encodeproject.org/files/ENCFF301HHV/@@download/ENCFF301HHV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF074ROF bigBed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF957AIG 13183415 ENCODE Processing Pipeline 839f524070034dd7e6b4d2b6b9e720cf https://www.encodeproject.org/files/ENCFF074ROF/@@download/ENCFF074ROF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF394ZTN bed narrowPeak optimal idr thresholded peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF136URK, ENCFF419RSJ, ENCFF477WXR, ENCFF957AIG 435749 ENCODE Processing Pipeline 7112a49db6685576a31d66190a523927 https://www.encodeproject.org/files/ENCFF394ZTN/@@download/ENCFF394ZTN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF136URK bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF690XBP, ENCFF810LLR 7262094 ENCODE Processing Pipeline 96deb59d72656e37ad3fb6f1daa11fd7 https://www.encodeproject.org/files/ENCFF136URK/@@download/ENCFF136URK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF957AIG bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF028BVH, ENCFF810LLR 7187123 ENCODE Processing Pipeline 325aafb42621adbbc3ec79a79bf8ab83 https://www.encodeproject.org/files/ENCFF957AIG/@@download/ENCFF957AIG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF671OMJ bigBed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF477WXR 13076843 ENCODE Processing Pipeline c5bfe67a098f9800e76a5cf14deda92a https://www.encodeproject.org/files/ENCFF671OMJ/@@download/ENCFF671OMJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF267JYW bigBed narrowPeak optimal idr thresholded peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF394ZTN 824852 ENCODE Processing Pipeline 75e113ef132bb98fca1734d2761ca4d8 https://www.encodeproject.org/files/ENCFF267JYW/@@download/ENCFF267JYW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF774DSJ bam unfiltered alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAF, ENCFF807MUK 1228371485 ENCODE Processing Pipeline 3e9bae2cbf9692ff87191b32191fb229 https://www.encodeproject.org/files/ENCFF774DSJ/@@download/ENCFF774DSJ.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF565LJN bam unfiltered alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAE, ENCFF807MUK 1364295419 ENCODE Processing Pipeline 3eb17a2bac5b65daec708209686257ce https://www.encodeproject.org/files/ENCFF565LJN/@@download/ENCFF565LJN.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF002EAE fastq reads ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 951915935 Michael Snyder, Stanford 483bfa2e00cb1bdf6d2852f440af8e94 SRA:SRR5111643 https://www.encodeproject.org/files/ENCFF002EAE/@@download/ENCFF002EAE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF002EAF fastq reads ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 869273405 Michael Snyder, Stanford 3643f2f0b02e883b31073333ca152de6 SRA:SRR5111642 https://www.encodeproject.org/files/ENCFF002EAF/@@download/ENCFF002EAF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF827OOM bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF002EAF, ENCFF807MUK 809675850 ENCODE Processing Pipeline 24fa2284ed8d6b08a59590f234a9be9c https://www.encodeproject.org/files/ENCFF827OOM/@@download/ENCFF827OOM.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF466OCY bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF002EAE, ENCFF807MUK 881539143 ENCODE Processing Pipeline 2eea011a0000403933e3311c630c022a https://www.encodeproject.org/files/ENCFF466OCY/@@download/ENCFF466OCY.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF714LYY bigWig signal p-value ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF466OCY, ENCFF863STQ 655577427 ENCODE Processing Pipeline 7a62815b45327d050234ea9067f0a697 https://www.encodeproject.org/files/ENCFF714LYY/@@download/ENCFF714LYY.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF843LPL bigWig fold change over control ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF827OOM 442473608 ENCODE Processing Pipeline 7e05aae32ccd63f65a4c3fb326566abb https://www.encodeproject.org/files/ENCFF843LPL/@@download/ENCFF843LPL.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF391VQJ bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF466OCY, ENCFF863STQ 4281301 ENCODE Processing Pipeline fd334351cebc3c1ce7fc0f01ad9794e0 https://www.encodeproject.org/files/ENCFF391VQJ/@@download/ENCFF391VQJ.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF938UJO bigWig signal p-value ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF827OOM 627589559 ENCODE Processing Pipeline ff3c5a1033995f96e20de83e4aecfc00 https://www.encodeproject.org/files/ENCFF938UJO/@@download/ENCFF938UJO.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF705XME bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF425JYG, ENCFF466OCY, ENCFF827OOM, ENCFF863STQ 5873266 ENCODE Processing Pipeline d661158e8b7400da7dd8187a4ea59ab5 https://www.encodeproject.org/files/ENCFF705XME/@@download/ENCFF705XME.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF039USO bigBed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF804JRA 11093771 ENCODE Processing Pipeline 7592e565c94fdfdcf95aa40efc5690c7 https://www.encodeproject.org/files/ENCFF039USO/@@download/ENCFF039USO.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF992IME bigWig signal p-value ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF425JYG, ENCFF466OCY, ENCFF827OOM, ENCFF863STQ 923363387 ENCODE Processing Pipeline 459e62d413ae7fd4d92b5f90d233aedc https://www.encodeproject.org/files/ENCFF992IME/@@download/ENCFF992IME.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF181ZZO bigWig fold change over control ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF466OCY, ENCFF863STQ 483666403 ENCODE Processing Pipeline 256a74466e46fb5c5f7997a7b7ba0cc2 https://www.encodeproject.org/files/ENCFF181ZZO/@@download/ENCFF181ZZO.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF602VRK bigWig fold change over control ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF425JYG, ENCFF466OCY, ENCFF827OOM, ENCFF863STQ 1046723807 ENCODE Processing Pipeline 2756f730d014e8da3ebd2acf21c27ee9 https://www.encodeproject.org/files/ENCFF602VRK/@@download/ENCFF602VRK.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF140EUS bigBed narrowPeak optimal idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF817DIW 135779 ENCODE Processing Pipeline 217c5e1272c4e6933e1cbc395dc62b18 https://www.encodeproject.org/files/ENCFF140EUS/@@download/ENCFF140EUS.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched status, mismatched file status ENCFF788YKB bigBed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF391VQJ 11064370 ENCODE Processing Pipeline 7efea645c0e927564cf35b62311d0ca7 https://www.encodeproject.org/files/ENCFF788YKB/@@download/ENCFF788YKB.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF097NFL bed narrowPeak conservative idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF391VQJ, ENCFF705XME, ENCFF804JRA 35445 ENCODE Processing Pipeline 9304d3686036f200ba590ffdde6f9317 https://www.encodeproject.org/files/ENCFF097NFL/@@download/ENCFF097NFL.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF804JRA bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF827OOM 4445975 ENCODE Processing Pipeline 3a9ddd657f91b478fa86ab2d1e9396b2 https://www.encodeproject.org/files/ENCFF804JRA/@@download/ENCFF804JRA.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF749QTT bigBed narrowPeak conservative idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF923XRW 115186 ENCODE Processing Pipeline 9f4cd4e1d9dde9423133da9c7a0eeb5e https://www.encodeproject.org/files/ENCFF749QTT/@@download/ENCFF749QTT.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched status, mismatched file status ENCFF266ORV bed narrowPeak optimal idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF391VQJ, ENCFF705XME, ENCFF804JRA 49062 ENCODE Processing Pipeline ce2747e5015c7e856e938d40df5e310a https://www.encodeproject.org/files/ENCFF266ORV/@@download/ENCFF266ORV.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF220SKY bigBed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF705XME 11519337 ENCODE Processing Pipeline 0e7a0fe2eeb5768169240521f1156e0e https://www.encodeproject.org/files/ENCFF220SKY/@@download/ENCFF220SKY.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF595EKU bam unfiltered alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAF, ENCFF643CGH 1234926556 ENCODE Processing Pipeline 06c7f3f141d8f150ee2766aa5ab3cbbb https://www.encodeproject.org/files/ENCFF595EKU/@@download/ENCFF595EKU.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF646VNO bam unfiltered alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAE, ENCFF643CGH 1371953970 ENCODE Processing Pipeline 31c03112f7de08ccb55ebf028c0a5045 https://www.encodeproject.org/files/ENCFF646VNO/@@download/ENCFF646VNO.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF542CFD bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAF, ENCFF643CGH 809415520 ENCODE Processing Pipeline 11419f32d43c7d85fc4f45221c200590 https://www.encodeproject.org/files/ENCFF542CFD/@@download/ENCFF542CFD.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF549LBG bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAE, ENCFF643CGH 881318530 ENCODE Processing Pipeline 90e1bb01336b40b6f29b826a222e38aa https://www.encodeproject.org/files/ENCFF549LBG/@@download/ENCFF549LBG.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF324KUH bigWig signal p-value ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF549LBG, ENCFF918AJW 546085470 ENCODE Processing Pipeline 14304250c742001e8d6e6fc23fac55eb https://www.encodeproject.org/files/ENCFF324KUH/@@download/ENCFF324KUH.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF340KQY bigWig signal p-value ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF542CFD, ENCFF949XNJ 527661368 ENCODE Processing Pipeline 725f51646f0a5e00f0b4d5aeab584f65 https://www.encodeproject.org/files/ENCFF340KQY/@@download/ENCFF340KQY.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF761ROL bigWig signal p-value ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF542CFD, ENCFF549LBG, ENCFF918AJW, ENCFF949XNJ 1085130978 ENCODE Processing Pipeline 18640d7845481cd2f593d4d5b603c7ce https://www.encodeproject.org/files/ENCFF761ROL/@@download/ENCFF761ROL.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF613BWB bigWig fold change over control ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF549LBG, ENCFF918AJW 482235523 ENCODE Processing Pipeline 5ce0c1aa48a1cef87ef3b66e62f14527 https://www.encodeproject.org/files/ENCFF613BWB/@@download/ENCFF613BWB.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF623DEN bigWig fold change over control ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF542CFD, ENCFF949XNJ 451189966 ENCODE Processing Pipeline a84651672679b71cacc61bc7d17e24a6 https://www.encodeproject.org/files/ENCFF623DEN/@@download/ENCFF623DEN.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF182ZBH bigWig fold change over control ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF542CFD, ENCFF549LBG, ENCFF918AJW, ENCFF949XNJ 1049232545 ENCODE Processing Pipeline 44903830ccf98cd01440dd069e51ceba https://www.encodeproject.org/files/ENCFF182ZBH/@@download/ENCFF182ZBH.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF225OWA bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF549LBG, ENCFF918AJW 4095374 ENCODE Processing Pipeline ca4df561a587211b772f8993e50dd745 https://www.encodeproject.org/files/ENCFF225OWA/@@download/ENCFF225OWA.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF051CGE bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF542CFD, ENCFF949XNJ 4262148 ENCODE Processing Pipeline b30ef0cb95f9193668feac9f2622f599 https://www.encodeproject.org/files/ENCFF051CGE/@@download/ENCFF051CGE.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF449CPJ bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF542CFD, ENCFF549LBG, ENCFF918AJW, ENCFF949XNJ 5584764 ENCODE Processing Pipeline 8f7446a812297b5f2943d10e7b1e10d3 https://www.encodeproject.org/files/ENCFF449CPJ/@@download/ENCFF449CPJ.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF221MDR bigBed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF225OWA 10797569 ENCODE Processing Pipeline 1c7878e38577d2a19f9aac96f3d7e873 https://www.encodeproject.org/files/ENCFF221MDR/@@download/ENCFF221MDR.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF248ACF bigBed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051CGE 10879665 ENCODE Processing Pipeline d42fe1d58b6d43e5b2a7694ff384c933 https://www.encodeproject.org/files/ENCFF248ACF/@@download/ENCFF248ACF.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF481MPY bigBed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF449CPJ 11557491 ENCODE Processing Pipeline 229d56ccc2f14b437e6da4ff59ee04e9 https://www.encodeproject.org/files/ENCFF481MPY/@@download/ENCFF481MPY.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF273CDX bed narrowPeak conservative idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051CGE, ENCFF225OWA, ENCFF419RSJ, ENCFF449CPJ 36289 ENCODE Processing Pipeline fd55e46ce18a744762a37ac2eba86750 https://www.encodeproject.org/files/ENCFF273CDX/@@download/ENCFF273CDX.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF276YNK bigBed narrowPeak conservative idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF273CDX 116807 ENCODE Processing Pipeline a4198535cc46f4a76bf7fd77a09403a4 https://www.encodeproject.org/files/ENCFF276YNK/@@download/ENCFF276YNK.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF558UWY bed narrowPeak optimal idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051CGE, ENCFF225OWA, ENCFF419RSJ, ENCFF449CPJ 47649 ENCODE Processing Pipeline bc9d46a5e84ad11d35c428d736fadeb5 https://www.encodeproject.org/files/ENCFF558UWY/@@download/ENCFF558UWY.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF100SME bigBed narrowPeak optimal idr thresholded peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF558UWY 133751 ENCODE Processing Pipeline 751743d2bb045aed29112beee052b85e https://www.encodeproject.org/files/ENCFF100SME/@@download/ENCFF100SME.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF400BXJ fastq reads ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 1 1 101 paired-ended 1 ENCFF843RNC 2356699301 Michael Snyder, Stanford d6aa7f6329194e11fd99ce886a94e542 https://www.encodeproject.org/files/ENCFF400BXJ/@@download/ENCFF400BXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF305RJU fastq reads ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 1 101 paired-ended 1 ENCFF903QJF 2565315624 Michael Snyder, Stanford 1bce5d69f2fc476c1b8cc96bf7defe4c https://www.encodeproject.org/files/ENCFF305RJU/@@download/ENCFF305RJU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF843RNC fastq reads ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 1 1 101 paired-ended 2 ENCFF400BXJ 2378237484 Michael Snyder, Stanford e09f60fa55c5a50ac6dc069282b6c9b7 https://www.encodeproject.org/files/ENCFF843RNC/@@download/ENCFF843RNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF903QJF fastq reads ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 1 101 paired-ended 2 ENCFF305RJU 2590329395 Michael Snyder, Stanford 23f6eb3b165dc70cb5ce80f46d930d77 https://www.encodeproject.org/files/ENCFF903QJF/@@download/ENCFF903QJF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF845QDX bam unfiltered alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 101 ENCFF305RJU, ENCFF643CGH, ENCFF903QJF 5696877587 ENCODE Processing Pipeline 6dfa9baf32cf0a9744560ac77affa8b8 https://www.encodeproject.org/files/ENCFF845QDX/@@download/ENCFF845QDX.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF218LRV bam unfiltered alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 101 ENCFF305RJU, ENCFF807MUK, ENCFF903QJF 5689686972 ENCODE Processing Pipeline f855872e0ea1f22a66da6692267c31c5 https://www.encodeproject.org/files/ENCFF218LRV/@@download/ENCFF218LRV.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF916TXZ bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 101 ENCFF305RJU, ENCFF643CGH, ENCFF903QJF 4899062069 ENCODE Processing Pipeline 05c08d7b726c574b84d0c55daa8615a7 https://www.encodeproject.org/files/ENCFF916TXZ/@@download/ENCFF916TXZ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF623SOH bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 101 ENCFF305RJU, ENCFF807MUK, ENCFF903QJF 4897864211 ENCODE Processing Pipeline 180567a9f2dbbd7a9a8d65dcc1dfce03 https://www.encodeproject.org/files/ENCFF623SOH/@@download/ENCFF623SOH.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF795SPY bigWig signal p-value ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF623SOH 1434641178 ENCODE Processing Pipeline f1f3bcad15cd6ffe0fce26441ca74553 https://www.encodeproject.org/files/ENCFF795SPY/@@download/ENCFF795SPY.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF473ROT bigWig fold change over control ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF623SOH 1408925374 ENCODE Processing Pipeline 87915f12c55a336b709ea46a88cebcc4 https://www.encodeproject.org/files/ENCFF473ROT/@@download/ENCFF473ROT.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF017QGA bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF623SOH 6965848 ENCODE Processing Pipeline 95d97fa1aec3eff301de1f4de9b522a7 https://www.encodeproject.org/files/ENCFF017QGA/@@download/ENCFF017QGA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF666RWK bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF017QGA 13399309 ENCODE Processing Pipeline e1d82f69d9275944da92c82dd515b2d4 https://www.encodeproject.org/files/ENCFF666RWK/@@download/ENCFF666RWK.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF843CUB bigWig fold change over control ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF916TXZ 1407047058 ENCODE Processing Pipeline 52fd4411e784757c9d42d5950490440b https://www.encodeproject.org/files/ENCFF843CUB/@@download/ENCFF843CUB.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF044RQE bigWig signal p-value ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF916TXZ 1200238354 ENCODE Processing Pipeline 03fefd4b9f8cc0d71d94d64ca1ddf1ad https://www.encodeproject.org/files/ENCFF044RQE/@@download/ENCFF044RQE.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF313EWR bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF916TXZ 6884717 ENCODE Processing Pipeline 4ddf983a2fdcfca0996966d833c0a805 https://www.encodeproject.org/files/ENCFF313EWR/@@download/ENCFF313EWR.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF193UMB bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF313EWR 13412278 ENCODE Processing Pipeline 8b0a76a2008176d66fbc6f53b7779d92 https://www.encodeproject.org/files/ENCFF193UMB/@@download/ENCFF193UMB.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF842HVL fastq reads ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 1 101 paired-ended 1 ENCFF642UJL 2492650574 Michael Snyder, Stanford b22301e6603b48ecb7f395e672300a00 https://www.encodeproject.org/files/ENCFF842HVL/@@download/ENCFF842HVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF642UJL fastq reads ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 1 101 paired-ended 2 ENCFF842HVL 2499375989 Michael Snyder, Stanford d87c2542ba9e60b529de5c9f8ec8c6b9 https://www.encodeproject.org/files/ENCFF642UJL/@@download/ENCFF642UJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF210DLI bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 101 ENCFF642UJL, ENCFF643CGH, ENCFF842HVL 4689867619 ENCODE Processing Pipeline 63393c4a8328e276819425d20950b548 https://www.encodeproject.org/files/ENCFF210DLI/@@download/ENCFF210DLI.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF060SAA bam unfiltered alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 101 ENCFF642UJL, ENCFF807MUK, ENCFF842HVL 5469588378 ENCODE Processing Pipeline 42aed9183ec4814e5307a2da5e75829f https://www.encodeproject.org/files/ENCFF060SAA/@@download/ENCFF060SAA.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF166MYD bam unfiltered alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 101 ENCFF642UJL, ENCFF643CGH, ENCFF842HVL 5474633396 ENCODE Processing Pipeline 3951df2394377e7655a9c5812cfeb3af https://www.encodeproject.org/files/ENCFF166MYD/@@download/ENCFF166MYD.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF946UWI bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 101 ENCFF642UJL, ENCFF807MUK, ENCFF842HVL 4687923922 ENCODE Processing Pipeline 2b41033d6dba4d01db92388e8de5d7ae https://www.encodeproject.org/files/ENCFF946UWI/@@download/ENCFF946UWI.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF385APU bigWig signal p-value ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF623SOH, ENCFF946UWI 1966733866 ENCODE Processing Pipeline 0f02b68e00a76ec75614ab733b56f921 https://www.encodeproject.org/files/ENCFF385APU/@@download/ENCFF385APU.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF824AXE bigWig signal p-value ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF210DLI 1259408024 ENCODE Processing Pipeline 5159ce110c14d3bc71f90a6bc1c5b7c9 https://www.encodeproject.org/files/ENCFF824AXE/@@download/ENCFF824AXE.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF023NIN bigWig signal p-value ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF946UWI 1448225504 ENCODE Processing Pipeline 979d9c9aa025a9b8f2878fdfc8082d26 https://www.encodeproject.org/files/ENCFF023NIN/@@download/ENCFF023NIN.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF856OIK bigWig signal p-value ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF210DLI, ENCFF916TXZ 1994447758 ENCODE Processing Pipeline 7cf05e6293fb7109617a9683f904cffb https://www.encodeproject.org/files/ENCFF856OIK/@@download/ENCFF856OIK.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF291TFP bigWig fold change over control ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF210DLI 1417660447 ENCODE Processing Pipeline f666b57de66171c1f24640b54fb1b09a https://www.encodeproject.org/files/ENCFF291TFP/@@download/ENCFF291TFP.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF592YDM bigWig fold change over control ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF946UWI 1425232229 ENCODE Processing Pipeline 59adf994f233de802eda0b59ae4eaa0f https://www.encodeproject.org/files/ENCFF592YDM/@@download/ENCFF592YDM.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF839RPM bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF623SOH, ENCFF946UWI 7217761 ENCODE Processing Pipeline acf3c3c9bfcf41e668e15d3215b19299 https://www.encodeproject.org/files/ENCFF839RPM/@@download/ENCFF839RPM.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF628PAY bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF544AVU 13325063 ENCODE Processing Pipeline fbb3b4a66cff22f5b96ce7caae3ce543 https://www.encodeproject.org/files/ENCFF628PAY/@@download/ENCFF628PAY.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF343FWU bigBed narrowPeak optimal idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF756AYX 853235 ENCODE Processing Pipeline c37a53f9462b76ee2a6a050631d81ffe https://www.encodeproject.org/files/ENCFF343FWU/@@download/ENCFF343FWU.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF111FYA bed narrowPeak conservative idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF001TDO, ENCFF067KHY, ENCFF514JHJ, ENCFF839RPM 330801 ENCODE Processing Pipeline a8141edd27e0f2815bd1b464035234a6 https://www.encodeproject.org/files/ENCFF111FYA/@@download/ENCFF111FYA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF758PXZ bigWig fold change over control ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF210DLI, ENCFF916TXZ 2027006510 ENCODE Processing Pipeline a5fee159ef713efaf7c84d98ae1470a1 https://www.encodeproject.org/files/ENCFF758PXZ/@@download/ENCFF758PXZ.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF514JHJ bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF946UWI 6751583 ENCODE Processing Pipeline 52534cb55c6905d4009633e23a8e6cad https://www.encodeproject.org/files/ENCFF514JHJ/@@download/ENCFF514JHJ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF516QGK bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF032GVQ 13527779 ENCODE Processing Pipeline 882e9e21f97319c9425c91936b019e47 https://www.encodeproject.org/files/ENCFF516QGK/@@download/ENCFF516QGK.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF723KEI bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF514JHJ 13521084 ENCODE Processing Pipeline 44d390b26ce032e33e4ef10344ad790b https://www.encodeproject.org/files/ENCFF723KEI/@@download/ENCFF723KEI.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF988NSP bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF839RPM 13321857 ENCODE Processing Pipeline 36e1bd4ad6c3480229eae3d0f569d4a4 https://www.encodeproject.org/files/ENCFF988NSP/@@download/ENCFF988NSP.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF810BEF bigBed narrowPeak optimal idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF943HTN 856059 ENCODE Processing Pipeline 53551fad3f9a04714eabeb116e54866f https://www.encodeproject.org/files/ENCFF810BEF/@@download/ENCFF810BEF.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF748AXA bigWig fold change over control ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF623SOH, ENCFF946UWI 1991884917 ENCODE Processing Pipeline b721b51bef907db766529a4c8ddeddd0 https://www.encodeproject.org/files/ENCFF748AXA/@@download/ENCFF748AXA.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF032GVQ bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 ENCFF210DLI 6741615 ENCODE Processing Pipeline 6b07526f02cd5a79494e85b2e120706d https://www.encodeproject.org/files/ENCFF032GVQ/@@download/ENCFF032GVQ.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF921NKG bed narrowPeak conservative idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF032GVQ, ENCFF313EWR, ENCFF419RSJ, ENCFF544AVU 322695 ENCODE Processing Pipeline ee495837e1a142220fec2d442d6addd2 https://www.encodeproject.org/files/ENCFF921NKG/@@download/ENCFF921NKG.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF191TFW bigBed narrowPeak conservative idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF921NKG 730626 ENCODE Processing Pipeline 50c2e40dc29504173d5f005dbb45a1fc https://www.encodeproject.org/files/ENCFF191TFW/@@download/ENCFF191TFW.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF370WJK bigBed narrowPeak conservative idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF111FYA 741605 ENCODE Processing Pipeline 5888b3d20d700f80b67514e72229848d https://www.encodeproject.org/files/ENCFF370WJK/@@download/ENCFF370WJK.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF544AVU bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF210DLI, ENCFF916TXZ 7206966 ENCODE Processing Pipeline 3e4b9a17282278977495684aaaa6a10c https://www.encodeproject.org/files/ENCFF544AVU/@@download/ENCFF544AVU.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF067KHY bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF623SOH 6885093 ENCODE Processing Pipeline bef9e10b7eb52255bd289bb20a549b4b https://www.encodeproject.org/files/ENCFF067KHY/@@download/ENCFF067KHY.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF825NSU bigBed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF067KHY 13396095 ENCODE Processing Pipeline bde6bfa6da836272b1947db324491c11 https://www.encodeproject.org/files/ENCFF825NSU/@@download/ENCFF825NSU.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF943HTN bed narrowPeak optimal idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF001TDO, ENCFF067KHY, ENCFF514JHJ, ENCFF839RPM 402059 ENCODE Processing Pipeline 8f8082a056f525a7ce0da661d0177bea https://www.encodeproject.org/files/ENCFF943HTN/@@download/ENCFF943HTN.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF756AYX bed narrowPeak optimal idr thresholded peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2, 3 ENCFF032GVQ, ENCFF313EWR, ENCFF419RSJ, ENCFF544AVU 398117 ENCODE Processing Pipeline f0026d57a51b4b835da701493bc58be5 https://www.encodeproject.org/files/ENCFF756AYX/@@download/ENCFF756AYX.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF729ADA fastq reads ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF951MCE 3306556682 Michael Snyder, Stanford cc5626ded33f65529180f53598da6b14 SRA:SRR6213101 https://www.encodeproject.org/files/ENCFF729ADA/@@download/ENCFF729ADA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF569UHH fastq reads ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF105RCC 2931014436 Michael Snyder, Stanford cb90e04e44ec68963e4fa3b2463d2b80 SRA:SRR6213100 https://www.encodeproject.org/files/ENCFF569UHH/@@download/ENCFF569UHH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF105RCC fastq reads ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF569UHH 3009572444 Michael Snyder, Stanford 7130565f57ab993785f65951d8ba0983 SRA:SRR6213100 https://www.encodeproject.org/files/ENCFF105RCC/@@download/ENCFF105RCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF951MCE fastq reads ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF729ADA 3198440809 Michael Snyder, Stanford 5a9f7bc43a4f93c64ca1b18f7ec791f1 SRA:SRR6213101 https://www.encodeproject.org/files/ENCFF951MCE/@@download/ENCFF951MCE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF760BKV bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF105RCC, ENCFF569UHH, ENCFF807MUK 4990150879 ENCODE Processing Pipeline 33e3cfe20f560ec9c83bdbf874c8e045 https://www.encodeproject.org/files/ENCFF760BKV/@@download/ENCFF760BKV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF352DFY bam unfiltered alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF105RCC, ENCFF569UHH, ENCFF643CGH 5970418472 ENCODE Processing Pipeline d71a91786d3f3e0ce08fe4f9263cb191 https://www.encodeproject.org/files/ENCFF352DFY/@@download/ENCFF352DFY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF736KZH bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF105RCC, ENCFF569UHH, ENCFF643CGH 4992588247 ENCODE Processing Pipeline a91c15ea4a014d60326397910bd618cb https://www.encodeproject.org/files/ENCFF736KZH/@@download/ENCFF736KZH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF929WJP bam unfiltered alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF105RCC, ENCFF569UHH, ENCFF807MUK 5966208093 ENCODE Processing Pipeline c51bf6794d8bfa360bcb705cfd0fd84d https://www.encodeproject.org/files/ENCFF929WJP/@@download/ENCFF929WJP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF657LCD bam unfiltered alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF729ADA, ENCFF807MUK, ENCFF951MCE 6467026213 ENCODE Processing Pipeline 3efa9f590b744424183f27f020a91405 https://www.encodeproject.org/files/ENCFF657LCD/@@download/ENCFF657LCD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF413KOS bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF729ADA, ENCFF807MUK, ENCFF951MCE 5236217079 ENCODE Processing Pipeline 2116a572cb2e8b668cba8046c7037472 https://www.encodeproject.org/files/ENCFF413KOS/@@download/ENCFF413KOS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF646NTT bam unfiltered alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF729ADA, ENCFF951MCE 6470645375 ENCODE Processing Pipeline ab6834b1b7ec5eec016327e68c75627b https://www.encodeproject.org/files/ENCFF646NTT/@@download/ENCFF646NTT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF305MVH bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF729ADA, ENCFF951MCE 5238444096 ENCODE Processing Pipeline 03cd66643ee430004b19c96f3ae4a714 https://www.encodeproject.org/files/ENCFF305MVH/@@download/ENCFF305MVH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF825NKU bigWig signal p-value ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF760BKV 1382081089 ENCODE Processing Pipeline 43b2d500a6e72b627da2bc1bb08981b9 https://www.encodeproject.org/files/ENCFF825NKU/@@download/ENCFF825NKU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF062OVG bigWig signal p-value ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF413KOS 1447111726 ENCODE Processing Pipeline 18b51037e3eff2bfdb165c882653dd2e https://www.encodeproject.org/files/ENCFF062OVG/@@download/ENCFF062OVG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF467AZT bigWig signal p-value ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF413KOS, ENCFF760BKV 1996164886 ENCODE Processing Pipeline fed30be338f6ba8b42e28db9233f77eb https://www.encodeproject.org/files/ENCFF467AZT/@@download/ENCFF467AZT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF339JUE bigWig fold change over control ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF760BKV 1436482943 ENCODE Processing Pipeline 437e8bf4a52c4e181070e09705797d7a https://www.encodeproject.org/files/ENCFF339JUE/@@download/ENCFF339JUE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF766ZFC bigWig fold change over control ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF413KOS 1458375647 ENCODE Processing Pipeline 18035a1e86510748a9558cca38bd21eb https://www.encodeproject.org/files/ENCFF766ZFC/@@download/ENCFF766ZFC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF643NBZ bigWig fold change over control ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF413KOS, ENCFF760BKV 2037289171 ENCODE Processing Pipeline d6b6ff93dcaafe17c1ef3bd60f3ea8c7 https://www.encodeproject.org/files/ENCFF643NBZ/@@download/ENCFF643NBZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF830DCZ bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF760BKV 6877167 ENCODE Processing Pipeline a3a38aa52241dcebc73412ae58edb536 https://www.encodeproject.org/files/ENCFF830DCZ/@@download/ENCFF830DCZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF791XWT bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF413KOS 6937225 ENCODE Processing Pipeline 4dfcfaceafdc19719d513b9f3b800fed https://www.encodeproject.org/files/ENCFF791XWT/@@download/ENCFF791XWT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF806EBP bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF413KOS, ENCFF760BKV 7208207 ENCODE Processing Pipeline a79f0e9a600c84618033888e7aeb7fba https://www.encodeproject.org/files/ENCFF806EBP/@@download/ENCFF806EBP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF843QAL bigBed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF830DCZ 13398907 ENCODE Processing Pipeline 0eb65a32de0a6ea92fb6ca42fb316c60 https://www.encodeproject.org/files/ENCFF843QAL/@@download/ENCFF843QAL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF134OOL bigBed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF806EBP 13216254 ENCODE Processing Pipeline 54bb6c682810003a1e0695e436c57ae8 https://www.encodeproject.org/files/ENCFF134OOL/@@download/ENCFF134OOL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF966CHA bigBed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF791XWT 13383232 ENCODE Processing Pipeline f42e5ddb8c2efdee99f5e13605c2aef5 https://www.encodeproject.org/files/ENCFF966CHA/@@download/ENCFF966CHA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF390APJ bed narrowPeak conservative idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF791XWT, ENCFF806EBP, ENCFF830DCZ 389850 ENCODE Processing Pipeline e73c74fecba5a2ffdadca2b991c41782 https://www.encodeproject.org/files/ENCFF390APJ/@@download/ENCFF390APJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF332GAA bigBed narrowPeak conservative idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF390APJ 829401 ENCODE Processing Pipeline f56ef69e4690f6a25324ab545500f855 https://www.encodeproject.org/files/ENCFF332GAA/@@download/ENCFF332GAA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF895AIB bigBed narrowPeak optimal idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF290NCZ 929571 ENCODE Processing Pipeline 1338245ee1cfd9aaee0d9c1de38e1109 https://www.encodeproject.org/files/ENCFF895AIB/@@download/ENCFF895AIB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF290NCZ bed narrowPeak optimal idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF791XWT, ENCFF806EBP, ENCFF830DCZ 452899 ENCODE Processing Pipeline e67e0766ab42748a188a7608d5f535fb https://www.encodeproject.org/files/ENCFF290NCZ/@@download/ENCFF290NCZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF342SUY bigWig signal p-value ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF736KZH 1209731179 ENCODE Processing Pipeline f87732f19316a84ba5efee106becddd1 https://www.encodeproject.org/files/ENCFF342SUY/@@download/ENCFF342SUY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF614FAY bigWig signal p-value ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF305MVH 1540580352 ENCODE Processing Pipeline 9e7be1ef85b0fc85aa13713a04ddeac7 https://www.encodeproject.org/files/ENCFF614FAY/@@download/ENCFF614FAY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF920KHU bigWig signal p-value ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF305MVH, ENCFF736KZH 2003961784 ENCODE Processing Pipeline 881dd358c0ead0d05a9c23bfb7783e07 https://www.encodeproject.org/files/ENCFF920KHU/@@download/ENCFF920KHU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF787NBM bigWig fold change over control ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF736KZH 1446003142 ENCODE Processing Pipeline 8ada110c76654fff85a3d15dfe89b2a6 https://www.encodeproject.org/files/ENCFF787NBM/@@download/ENCFF787NBM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF391DQQ bigWig fold change over control ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF305MVH 1456309908 ENCODE Processing Pipeline de246ae4a3f4bc38057dcf4eaacbd32c https://www.encodeproject.org/files/ENCFF391DQQ/@@download/ENCFF391DQQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF745QJA bigWig fold change over control ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF305MVH, ENCFF736KZH 2050338926 ENCODE Processing Pipeline 27d99accd310f4efd2c93b03d8de511b https://www.encodeproject.org/files/ENCFF745QJA/@@download/ENCFF745QJA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF212PJW bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF305MVH 6912243 ENCODE Processing Pipeline 6b7e57dce1742f45c4c7e835e1e5d5a2 https://www.encodeproject.org/files/ENCFF212PJW/@@download/ENCFF212PJW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF725GXH bigBed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF212PJW 13372917 ENCODE Processing Pipeline 3a361ccfd1596725ed27e13e1b7e2124 https://www.encodeproject.org/files/ENCFF725GXH/@@download/ENCFF725GXH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF115PUW bed narrowPeak conservative idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF096LUD, ENCFF212PJW, ENCFF219QGM, ENCFF419RSJ 381922 ENCODE Processing Pipeline 9134a050f1cb88947aae17fab69e740d https://www.encodeproject.org/files/ENCFF115PUW/@@download/ENCFF115PUW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF914XSK bigBed narrowPeak optimal idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF381VJM 929777 ENCODE Processing Pipeline 10cbdd46e70b2922c5f8543c3f953cdf https://www.encodeproject.org/files/ENCFF914XSK/@@download/ENCFF914XSK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF219QGM bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF736KZH 6861743 ENCODE Processing Pipeline d0572c2841ebf71f830ae449000b1dba https://www.encodeproject.org/files/ENCFF219QGM/@@download/ENCFF219QGM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF773HIY bigBed narrowPeak conservative idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF115PUW 818395 ENCODE Processing Pipeline f3d84853ed8d912ab0464cfca56458e2 https://www.encodeproject.org/files/ENCFF773HIY/@@download/ENCFF773HIY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF096LUD bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF305MVH, ENCFF736KZH 7191904 ENCODE Processing Pipeline b1d6bcc78de40973ea0717a72182d45e https://www.encodeproject.org/files/ENCFF096LUD/@@download/ENCFF096LUD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF959MVU bigBed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF096LUD 13209384 ENCODE Processing Pipeline 0ab519fe1256d35efcbc892e04e71fd9 https://www.encodeproject.org/files/ENCFF959MVU/@@download/ENCFF959MVU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF381VJM bed narrowPeak optimal idr thresholded peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF096LUD, ENCFF212PJW, ENCFF219QGM, ENCFF419RSJ 450470 ENCODE Processing Pipeline 69a2bc5d39e7fd4ed81de3da0bdebfbc https://www.encodeproject.org/files/ENCFF381VJM/@@download/ENCFF381VJM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF309SHJ bigBed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF219QGM 13407875 ENCODE Processing Pipeline 33223bba2f47048f0b1753ab51a4a4dd https://www.encodeproject.org/files/ENCFF309SHJ/@@download/ENCFF309SHJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF577SOM bam unfiltered alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPT, ENCFF002EGM, ENCFF807MUK 6912400426 ENCODE Processing Pipeline ef297aaa5fbb4d2afc2ec409886a57cb https://www.encodeproject.org/files/ENCFF577SOM/@@download/ENCFF577SOM.bam hg19 released mild to moderate bottlenecking ENCFF838MQU bam unfiltered alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPQ, ENCFF002EGU, ENCFF807MUK 7444902439 ENCODE Processing Pipeline 4ece0047f192959982cb3091f6fd8ea8 https://www.encodeproject.org/files/ENCFF838MQU/@@download/ENCFF838MQU.bam hg19 released mild to moderate bottlenecking ENCFF863CIW bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 1783546701 ENCODE Processing Pipeline 18e67047e5218fc4f9b12c2e9a95dd4d https://www.encodeproject.org/files/ENCFF863CIW/@@download/ENCFF863CIW.bigWig hg19 released mild to moderate bottlenecking ENCFF827IHE bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 1793521200 ENCODE Processing Pipeline fecaf79c25158203335794c876dce8e2 https://www.encodeproject.org/files/ENCFF827IHE/@@download/ENCFF827IHE.bigWig hg19 released mild to moderate bottlenecking ENCFF002DPQ fastq reads ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGU 3470757991 Michael Snyder, Stanford 06a967291724415b4c38e98673027262 SRA:SRR5112313 https://www.encodeproject.org/files/ENCFF002DPQ/@@download/ENCFF002DPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking ENCFF002DPT fastq reads ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGM 3173751143 Michael Snyder, Stanford 34a1c4149ad56966260c492121e7b2c6 SRA:SRR5112314 https://www.encodeproject.org/files/ENCFF002DPT/@@download/ENCFF002DPT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking ENCFF002EGM fastq reads ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPT 3230013056 Michael Snyder, Stanford af21e384abc832294a7c316bd4a8ed2d SRA:SRR5112314 https://www.encodeproject.org/files/ENCFF002EGM/@@download/ENCFF002EGM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking ENCFF002EGU fastq reads ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPQ 3518831135 Michael Snyder, Stanford 616c89bd13f3bb692e69ab033d5d879d SRA:SRR5112313 https://www.encodeproject.org/files/ENCFF002EGU/@@download/ENCFF002EGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking ENCFF671MPM bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 6488737 ENCODE Processing Pipeline 9779ff42fcda6560a204a2f99b346aa1 https://www.encodeproject.org/files/ENCFF671MPM/@@download/ENCFF671MPM.bed.gz hg19 released mild to moderate bottlenecking ENCFF526YPV bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 6327058 ENCODE Processing Pipeline 2f41dc28c750e8240fc22a540db5efc3 https://www.encodeproject.org/files/ENCFF526YPV/@@download/ENCFF526YPV.bed.gz hg19 released mild to moderate bottlenecking ENCFF486JBY bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF265BKP, ENCFF583FAG, ENCFF701AFL 7179879 ENCODE Processing Pipeline 80c3aeaa0b1dc6344068549aee58584d https://www.encodeproject.org/files/ENCFF486JBY/@@download/ENCFF486JBY.bed.gz hg19 released mild to moderate bottlenecking ENCFF195JAX bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF671MPM 11449071 ENCODE Processing Pipeline 52c399edb21a5570b7e29e3dac327d73 https://www.encodeproject.org/files/ENCFF195JAX/@@download/ENCFF195JAX.bigBed hg19 released mild to moderate bottlenecking ENCFF043TWX bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF526YPV 11182893 ENCODE Processing Pipeline 91e851adb4d1826979afc3777326c74a https://www.encodeproject.org/files/ENCFF043TWX/@@download/ENCFF043TWX.bigBed hg19 released mild to moderate bottlenecking ENCFF406ROB bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF486JBY 11237383 ENCODE Processing Pipeline 80ad9bceeb52fd11de1bb80468e64926 https://www.encodeproject.org/files/ENCFF406ROB/@@download/ENCFF406ROB.bigBed hg19 released mild to moderate bottlenecking ENCFF284YJX bed narrowPeak conservative idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF486JBY, ENCFF526YPV, ENCFF671MPM 158142 ENCODE Processing Pipeline e22df21b9ce8579fa37728415a64243a https://www.encodeproject.org/files/ENCFF284YJX/@@download/ENCFF284YJX.bed.gz hg19 released mild to moderate bottlenecking ENCFF789TDB bigBed narrowPeak optimal idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF044NEB 431185 ENCODE Processing Pipeline 806ab48e1eb5d0593068196d8285c09e https://www.encodeproject.org/files/ENCFF789TDB/@@download/ENCFF789TDB.bigBed hg19 released mild to moderate bottlenecking ENCFF044NEB bed narrowPeak optimal idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF486JBY, ENCFF526YPV, ENCFF671MPM 217643 ENCODE Processing Pipeline 513e2c9ea79bc8dcc6bb801f67e6a7b5 https://www.encodeproject.org/files/ENCFF044NEB/@@download/ENCFF044NEB.bed.gz hg19 released mild to moderate bottlenecking ENCFF738ZDL bigBed narrowPeak conservative idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF284YJX 342333 ENCODE Processing Pipeline a795b74d6be0b926b491757a016dacf9 https://www.encodeproject.org/files/ENCFF738ZDL/@@download/ENCFF738ZDL.bigBed hg19 released mild to moderate bottlenecking ENCFF265BKP bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPT, ENCFF002EGM, ENCFF807MUK 5794354327 ENCODE Processing Pipeline b8a858bcfc92e2b0174ac4b872b9afce https://www.encodeproject.org/files/ENCFF265BKP/@@download/ENCFF265BKP.bam hg19 released mild to moderate bottlenecking ENCFF701AFL bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPQ, ENCFF002EGU, ENCFF807MUK 6417680920 ENCODE Processing Pipeline f8fc56d2422a2631c8df8b5ca600f8f4 https://www.encodeproject.org/files/ENCFF701AFL/@@download/ENCFF701AFL.bam hg19 released mild to moderate bottlenecking ENCFF666UBS bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 1373240063 ENCODE Processing Pipeline 69a4c7242cb8962efbd56a9fbd1753a9 https://www.encodeproject.org/files/ENCFF666UBS/@@download/ENCFF666UBS.bigWig hg19 released mild to moderate bottlenecking ENCFF587MYP bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 1792936091 ENCODE Processing Pipeline e75d07af4d310954ccdd29301fa45354 https://www.encodeproject.org/files/ENCFF587MYP/@@download/ENCFF587MYP.bigWig hg19 archived mild to moderate bottlenecking ENCFF192GSW bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF265BKP, ENCFF583FAG, ENCFF701AFL 2243842782 ENCODE Processing Pipeline eec0c6a2490386fc28f4c272f20c0aa3 https://www.encodeproject.org/files/ENCFF192GSW/@@download/ENCFF192GSW.bigWig hg19 released mild to moderate bottlenecking ENCFF339YVK bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 1805089645 ENCODE Processing Pipeline 61d3ca23655b3a0a166363a17df467c3 https://www.encodeproject.org/files/ENCFF339YVK/@@download/ENCFF339YVK.bigWig hg19 archived mild to moderate bottlenecking ENCFF512MVV bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 1315816529 ENCODE Processing Pipeline 8f8dfb2890b71ca159dd0bec8e2f078a https://www.encodeproject.org/files/ENCFF512MVV/@@download/ENCFF512MVV.bigWig hg19 released mild to moderate bottlenecking ENCFF926PVX bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF265BKP, ENCFF583FAG, ENCFF701AFL 2336654093 ENCODE Processing Pipeline 1d2cee9b99cbe618b3a13d701a2354db https://www.encodeproject.org/files/ENCFF926PVX/@@download/ENCFF926PVX.bigWig hg19 released mild to moderate bottlenecking ENCFF394AHT bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 6632562 ENCODE Processing Pipeline 6c6347af803bf0c891ffda6a72429358 https://www.encodeproject.org/files/ENCFF394AHT/@@download/ENCFF394AHT.bed.gz hg19 archived mild to moderate bottlenecking ENCFF181NXH bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 6531032 ENCODE Processing Pipeline d7a9067a72422c7b62771d5fb948ed21 https://www.encodeproject.org/files/ENCFF181NXH/@@download/ENCFF181NXH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF638TCF bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF394AHT 11456412 ENCODE Processing Pipeline 1e3c14b3731c5fc5461485d8ea8fb967 https://www.encodeproject.org/files/ENCFF638TCF/@@download/ENCFF638TCF.bigBed hg19 archived mild to moderate bottlenecking ENCFF094SQM bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF265BKP, ENCFF583FAG, ENCFF701AFL 7236792 ENCODE Processing Pipeline c27d3c9e88cba14a5ba78b9c488bbba5 https://www.encodeproject.org/files/ENCFF094SQM/@@download/ENCFF094SQM.bed.gz hg19 archived mild to moderate bottlenecking ENCFF486VFF bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF181NXH 11195372 ENCODE Processing Pipeline e2708335dbae86201216354ce76bbbd2 https://www.encodeproject.org/files/ENCFF486VFF/@@download/ENCFF486VFF.bigBed hg19 archived mild to moderate bottlenecking ENCFF724OGC bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF094SQM 11238420 ENCODE Processing Pipeline 47b444cd1a1d26d3464d432f3b2213a1 https://www.encodeproject.org/files/ENCFF724OGC/@@download/ENCFF724OGC.bigBed hg19 archived mild to moderate bottlenecking ENCFF241NAH bam unfiltered alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPT, ENCFF002EGM, ENCFF643CGH 6925551858 ENCODE Processing Pipeline 3ecb032bf91f65f095a492ff38608bf7 https://www.encodeproject.org/files/ENCFF241NAH/@@download/ENCFF241NAH.bam GRCh38 released mild to moderate bottlenecking ENCFF622HOD bam unfiltered alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPQ, ENCFF002EGU, ENCFF643CGH 7457792726 ENCODE Processing Pipeline 1de77af0008a20b18c642da05d78fe4b https://www.encodeproject.org/files/ENCFF622HOD/@@download/ENCFF622HOD.bam GRCh38 released mild to moderate bottlenecking ENCFF042XMV bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPT, ENCFF002EGM, ENCFF643CGH 5799284544 ENCODE Processing Pipeline 33416991a32829c5579a88a3766c6028 https://www.encodeproject.org/files/ENCFF042XMV/@@download/ENCFF042XMV.bam GRCh38 released mild to moderate bottlenecking ENCFF003FOB bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPQ, ENCFF002EGU, ENCFF643CGH 6422343982 ENCODE Processing Pipeline 8a479f78c3471e07ca99a9168a057677 https://www.encodeproject.org/files/ENCFF003FOB/@@download/ENCFF003FOB.bam GRCh38 released mild to moderate bottlenecking ENCFF042GQX bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF003FOB, ENCFF291AFY, ENCFF426RDP 1690517765 ENCODE Processing Pipeline 2a46eea49b52c506301df30d019a18fa https://www.encodeproject.org/files/ENCFF042GQX/@@download/ENCFF042GQX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF559BPK bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF042XMV, ENCFF291AFY 1098224398 ENCODE Processing Pipeline bc5d01ea78f9a5c1242fa17e8c825408 https://www.encodeproject.org/files/ENCFF559BPK/@@download/ENCFF559BPK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF448DEB bigWig signal p-value ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003FOB, ENCFF042XMV, ENCFF291AFY, ENCFF426RDP 2248109315 ENCODE Processing Pipeline 67a792f3c880a99f4d0024807e894060 https://www.encodeproject.org/files/ENCFF448DEB/@@download/ENCFF448DEB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF143ASS bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF003FOB, ENCFF291AFY, ENCFF426RDP 1798269553 ENCODE Processing Pipeline f4c57607c50af2f66428f862c415dbe5 https://www.encodeproject.org/files/ENCFF143ASS/@@download/ENCFF143ASS.bigWig GRCh38 released mild to moderate bottlenecking ENCFF011SNL bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF042XMV, ENCFF291AFY 1333940100 ENCODE Processing Pipeline d7419057c7deb574ad2aed940e08f7e8 https://www.encodeproject.org/files/ENCFF011SNL/@@download/ENCFF011SNL.bigWig GRCh38 released mild to moderate bottlenecking ENCFF618HBD bigWig fold change over control ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003FOB, ENCFF042XMV, ENCFF291AFY, ENCFF426RDP 2341154754 ENCODE Processing Pipeline 8fcc4355cd6640296d54f0c6cfeefe69 https://www.encodeproject.org/files/ENCFF618HBD/@@download/ENCFF618HBD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF653ISM bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF042XMV, ENCFF291AFY 6334954 ENCODE Processing Pipeline 619d3240c1df6dd6dd8c79f7b523d5d9 https://www.encodeproject.org/files/ENCFF653ISM/@@download/ENCFF653ISM.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF650GQS bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF653ISM 11204667 ENCODE Processing Pipeline f405c2cb503a955eb11e302aa4f493b5 https://www.encodeproject.org/files/ENCFF650GQS/@@download/ENCFF650GQS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF757NBH bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF296FYL 11468341 ENCODE Processing Pipeline ffbb45066259c009fd26ce2b323b1ac2 https://www.encodeproject.org/files/ENCFF757NBH/@@download/ENCFF757NBH.bigBed GRCh38 released mild to moderate bottlenecking ENCFF296FYL bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF003FOB, ENCFF291AFY, ENCFF426RDP 6492601 ENCODE Processing Pipeline 5ed8c15c6feff072fd92e460f4e7ba84 https://www.encodeproject.org/files/ENCFF296FYL/@@download/ENCFF296FYL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF305IJE bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003FOB, ENCFF042XMV, ENCFF291AFY, ENCFF426RDP 7187820 ENCODE Processing Pipeline b725e63602ffa02664640c42bc6cb959 https://www.encodeproject.org/files/ENCFF305IJE/@@download/ENCFF305IJE.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF079YRQ bigBed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF305IJE 11257275 ENCODE Processing Pipeline b868339a87286a3c2b3822535082b752 https://www.encodeproject.org/files/ENCFF079YRQ/@@download/ENCFF079YRQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF256LRY bigBed narrowPeak conservative idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF237XLE 344221 ENCODE Processing Pipeline 20e877497ae6487c201c86519d7aff91 https://www.encodeproject.org/files/ENCFF256LRY/@@download/ENCFF256LRY.bigBed GRCh38 released mild to moderate bottlenecking ENCFF245HOP bigBed narrowPeak optimal idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF541DRZ 428539 ENCODE Processing Pipeline 31fb863d206751b47c8ecfdbea33d06b https://www.encodeproject.org/files/ENCFF245HOP/@@download/ENCFF245HOP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF237XLE bed narrowPeak conservative idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF296FYL, ENCFF305IJE, ENCFF419RSJ, ENCFF653ISM 157903 ENCODE Processing Pipeline f20267efcaffde5714208bb9a8a9e19f https://www.encodeproject.org/files/ENCFF237XLE/@@download/ENCFF237XLE.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF541DRZ bed narrowPeak optimal idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF296FYL, ENCFF305IJE, ENCFF419RSJ, ENCFF653ISM 214431 ENCODE Processing Pipeline a9e1011101629a43596645633534b80d https://www.encodeproject.org/files/ENCFF541DRZ/@@download/ENCFF541DRZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF040STP bed narrowPeak optimal idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF094SQM, ENCFF181NXH, ENCFF394AHT 178771 ENCODE Processing Pipeline 9b97bb8fae61a2408b02082eb66a1c5f https://www.encodeproject.org/files/ENCFF040STP/@@download/ENCFF040STP.bed.gz hg19 archived mild to moderate bottlenecking ENCFF437EMX bigBed narrowPeak conservative idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF953SEZ 248083 ENCODE Processing Pipeline 95d7d6b35490af6ee447d0e103831139 https://www.encodeproject.org/files/ENCFF437EMX/@@download/ENCFF437EMX.bigBed hg19 archived mild to moderate bottlenecking ENCFF953SEZ bed narrowPeak conservative idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF094SQM, ENCFF181NXH, ENCFF394AHT 130735 ENCODE Processing Pipeline 6e577214a832e9e005b87ec3c4e7caa6 https://www.encodeproject.org/files/ENCFF953SEZ/@@download/ENCFF953SEZ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF109ZPP bigBed narrowPeak optimal idr thresholded peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF040STP 375625 ENCODE Processing Pipeline 83fc75985b2f165222d9bf956e1e2b65 https://www.encodeproject.org/files/ENCFF109ZPP/@@download/ENCFF109ZPP.bigBed hg19 archived mild to moderate bottlenecking ENCFF664BVY fastq reads ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF438IPE 2346407744 Michael Snyder, Stanford 7e2cd241570cdc38cdc3544318a294f0 SRA:SRR5111067 https://www.encodeproject.org/files/ENCFF664BVY/@@download/ENCFF664BVY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF317VCZ fastq reads ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF830YAY 2063045499 Michael Snyder, Stanford 134ff5280eaca001241976c5f1429374 SRA:SRR5111068 https://www.encodeproject.org/files/ENCFF317VCZ/@@download/ENCFF317VCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF830YAY fastq reads ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF317VCZ 2116337509 Michael Snyder, Stanford f914860be175bd3994e6e6019cef0f6c SRA:SRR5111068 https://www.encodeproject.org/files/ENCFF830YAY/@@download/ENCFF830YAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF438IPE fastq reads ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF664BVY 2405884957 Michael Snyder, Stanford 787e35ffc9e430a80919dcd5937f4dfd SRA:SRR5111067 https://www.encodeproject.org/files/ENCFF438IPE/@@download/ENCFF438IPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF317SGL bam unfiltered alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF438IPE, ENCFF664BVY, ENCFF807MUK 5233957329 ENCODE Processing Pipeline 5cf73e3950e3f4dc70e96c500e32e381 https://www.encodeproject.org/files/ENCFF317SGL/@@download/ENCFF317SGL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF828IYJ bam unfiltered alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317VCZ, ENCFF807MUK, ENCFF830YAY 4642998663 ENCODE Processing Pipeline e132c50ab03555352346b66b8cfcf5dd https://www.encodeproject.org/files/ENCFF828IYJ/@@download/ENCFF828IYJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF530XGH bam unfiltered alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF438IPE, ENCFF643CGH, ENCFF664BVY 5240155119 ENCODE Processing Pipeline 85aa94f551738a8351a34862a01ebd1e https://www.encodeproject.org/files/ENCFF530XGH/@@download/ENCFF530XGH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF084PBY bam unfiltered alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317VCZ, ENCFF643CGH, ENCFF830YAY 4648272332 ENCODE Processing Pipeline 44dc13e1074de070691df0e587404fa4 https://www.encodeproject.org/files/ENCFF084PBY/@@download/ENCFF084PBY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF171DED bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF438IPE, ENCFF664BVY, ENCFF807MUK 4512941101 ENCODE Processing Pipeline 488bb42904d3aec848c6380310e8a034 https://www.encodeproject.org/files/ENCFF171DED/@@download/ENCFF171DED.bam hg19 released missing genetic modification characterization missing control alignments ENCFF485MII bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317VCZ, ENCFF807MUK, ENCFF830YAY 3973944582 ENCODE Processing Pipeline 9f26dc520ac034ce3841cee47161613c https://www.encodeproject.org/files/ENCFF485MII/@@download/ENCFF485MII.bam hg19 released missing genetic modification characterization missing control alignments ENCFF246DMM bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317VCZ, ENCFF643CGH, ENCFF830YAY 3976232014 ENCODE Processing Pipeline fbb86f2a3015ae84c99ed5762fb1a878 https://www.encodeproject.org/files/ENCFF246DMM/@@download/ENCFF246DMM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF803XTQ bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF438IPE, ENCFF643CGH, ENCFF664BVY 4515144335 ENCODE Processing Pipeline 18131a62c26c2ff1468bea8426745db5 https://www.encodeproject.org/files/ENCFF803XTQ/@@download/ENCFF803XTQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF516VNZ bigWig signal p-value ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF485MII 1324764781 ENCODE Processing Pipeline 18c4a007c7d0a02c153918571dbf7080 https://www.encodeproject.org/files/ENCFF516VNZ/@@download/ENCFF516VNZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF417UBE bigWig signal p-value ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF171DED 1299185342 ENCODE Processing Pipeline ac3701e9776acc12cf6a985bac9eb083 https://www.encodeproject.org/files/ENCFF417UBE/@@download/ENCFF417UBE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF547QHG bigWig signal p-value ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF171DED, ENCFF485MII 1664574474 ENCODE Processing Pipeline 2013fc77646d6026d0057545ceabe5e2 https://www.encodeproject.org/files/ENCFF547QHG/@@download/ENCFF547QHG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF361SXN bigWig fold change over control ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF485MII 1318333782 ENCODE Processing Pipeline 9115aca4155f1eb60c6cd5e1d7a548d7 https://www.encodeproject.org/files/ENCFF361SXN/@@download/ENCFF361SXN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF293RNF bigWig fold change over control ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF171DED 1417721639 ENCODE Processing Pipeline f9b0b15b2cfc6610de3385602ff35574 https://www.encodeproject.org/files/ENCFF293RNF/@@download/ENCFF293RNF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF737OND bigWig fold change over control ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF171DED, ENCFF485MII 1926798710 ENCODE Processing Pipeline 1702d7207d13d8ef1d5df51dc8e05b4b https://www.encodeproject.org/files/ENCFF737OND/@@download/ENCFF737OND.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF358DXV bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF485MII 6896519 ENCODE Processing Pipeline 57e66ab774a87e729cc11b311c37a014 https://www.encodeproject.org/files/ENCFF358DXV/@@download/ENCFF358DXV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF475IAW bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF171DED 6950323 ENCODE Processing Pipeline 0f0e403330e4703cba7a2505524ebace https://www.encodeproject.org/files/ENCFF475IAW/@@download/ENCFF475IAW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF890BRN bigBed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF358DXV 13250951 ENCODE Processing Pipeline ed6ec991158a343821e480121486c245 https://www.encodeproject.org/files/ENCFF890BRN/@@download/ENCFF890BRN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF286QPO bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF171DED, ENCFF485MII 7248504 ENCODE Processing Pipeline 97bf8bb16b77a135843b3352d589ae1b https://www.encodeproject.org/files/ENCFF286QPO/@@download/ENCFF286QPO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF065IYJ bigBed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286QPO 13089514 ENCODE Processing Pipeline cc024bcd4ed68b9f724f6ae5fab8d0cc https://www.encodeproject.org/files/ENCFF065IYJ/@@download/ENCFF065IYJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF323WHD bigBed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF475IAW 13282836 ENCODE Processing Pipeline aafc07c24413b3b71005901d031fcadc https://www.encodeproject.org/files/ENCFF323WHD/@@download/ENCFF323WHD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF144ZMZ bed narrowPeak conservative idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF286QPO, ENCFF358DXV, ENCFF475IAW 274405 ENCODE Processing Pipeline ebc582a9ae6698923516a0dd53e49895 https://www.encodeproject.org/files/ENCFF144ZMZ/@@download/ENCFF144ZMZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF779HAK bed narrowPeak optimal idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF286QPO, ENCFF358DXV, ENCFF475IAW 330900 ENCODE Processing Pipeline 8722fa4f64d15c5fcac98cd932aaeed0 https://www.encodeproject.org/files/ENCFF779HAK/@@download/ENCFF779HAK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF819KNE bigBed narrowPeak conservative idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF144ZMZ 595308 ENCODE Processing Pipeline 8cf1b3672ea6c1e1adcbff069f23a44e https://www.encodeproject.org/files/ENCFF819KNE/@@download/ENCFF819KNE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF317YLY bigBed narrowPeak optimal idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF779HAK 688050 ENCODE Processing Pipeline 1cdc4a921c43212e6810367b43782c3a https://www.encodeproject.org/files/ENCFF317YLY/@@download/ENCFF317YLY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF119YOU bigWig signal p-value ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF246DMM 1187805058 ENCODE Processing Pipeline 4400b098fa36a4c508c7c4022d10470d https://www.encodeproject.org/files/ENCFF119YOU/@@download/ENCFF119YOU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF689GEX bigWig signal p-value ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF803XTQ 1288124790 ENCODE Processing Pipeline eb01af8f9d98cc154927dcfed3536266 https://www.encodeproject.org/files/ENCFF689GEX/@@download/ENCFF689GEX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF642EED bigWig signal p-value ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF246DMM, ENCFF803XTQ 1629360141 ENCODE Processing Pipeline c8c29ba47ab6316a2c3d942d75b78c3c https://www.encodeproject.org/files/ENCFF642EED/@@download/ENCFF642EED.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF336GMS bigWig fold change over control ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF246DMM 1320874325 ENCODE Processing Pipeline f34fcc92fdc2e76ddecd40165a0bcab5 https://www.encodeproject.org/files/ENCFF336GMS/@@download/ENCFF336GMS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF147FGU bigWig fold change over control ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF803XTQ 1421215703 ENCODE Processing Pipeline cb1b47e66c0ba7f7b518486a827141a1 https://www.encodeproject.org/files/ENCFF147FGU/@@download/ENCFF147FGU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF843EUT bigWig fold change over control ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF246DMM, ENCFF803XTQ 1937661457 ENCODE Processing Pipeline cd6f2e1b68135da239f6b6f4f8510993 https://www.encodeproject.org/files/ENCFF843EUT/@@download/ENCFF843EUT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF808XDC bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF246DMM 6799550 ENCODE Processing Pipeline 4bcdb631336ae889a4af93085fa9302e https://www.encodeproject.org/files/ENCFF808XDC/@@download/ENCFF808XDC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF900YZA bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF246DMM, ENCFF803XTQ 7230065 ENCODE Processing Pipeline f5c19f03e603be084aacaf433c938dc1 https://www.encodeproject.org/files/ENCFF900YZA/@@download/ENCFF900YZA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF228ZAZ bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF803XTQ 6873796 ENCODE Processing Pipeline 53d679f6858e84716ccb245d7548c593 https://www.encodeproject.org/files/ENCFF228ZAZ/@@download/ENCFF228ZAZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF382SQE bigBed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF808XDC 13255619 ENCODE Processing Pipeline 2a6b78881d9c95607f3bd8f14dd5ab60 https://www.encodeproject.org/files/ENCFF382SQE/@@download/ENCFF382SQE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF807OKK bigBed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF228ZAZ 13303352 ENCODE Processing Pipeline 779a3df38c36b5e007c244827ff66ecd https://www.encodeproject.org/files/ENCFF807OKK/@@download/ENCFF807OKK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF630SHO bigBed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF900YZA 13113736 ENCODE Processing Pipeline d455922d33d35432bfc1bf202d5290e8 https://www.encodeproject.org/files/ENCFF630SHO/@@download/ENCFF630SHO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF156BBF bed narrowPeak conservative idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF228ZAZ, ENCFF419RSJ, ENCFF808XDC, ENCFF900YZA 272158 ENCODE Processing Pipeline 348aacf0eb5065e1b01a78fc352d16b5 https://www.encodeproject.org/files/ENCFF156BBF/@@download/ENCFF156BBF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF657DEL bigBed narrowPeak conservative idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF156BBF 594622 ENCODE Processing Pipeline 65bf7e17c35a614a63fd0e102db7ae98 https://www.encodeproject.org/files/ENCFF657DEL/@@download/ENCFF657DEL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF210GCM bigBed narrowPeak optimal idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF747QYQ 697014 ENCODE Processing Pipeline 87135398a93615f8715bfedcc228fe15 https://www.encodeproject.org/files/ENCFF210GCM/@@download/ENCFF210GCM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF747QYQ bed narrowPeak optimal idr thresholded peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF228ZAZ, ENCFF419RSJ, ENCFF808XDC, ENCFF900YZA 335456 ENCODE Processing Pipeline d17621b133d64fe75599bde8b695b5db https://www.encodeproject.org/files/ENCFF747QYQ/@@download/ENCFF747QYQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF189APF bam unfiltered alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 100 ENCFF031GLY, ENCFF807MUK, ENCFF835JHL 6649044406 ENCODE Processing Pipeline d8d981f43f0793effe47d2cbd4789f94 https://www.encodeproject.org/files/ENCFF189APF/@@download/ENCFF189APF.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF311ZJG bam unfiltered alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 100 ENCFF020AAA, ENCFF807MUK, ENCFF993JOH 6255645332 ENCODE Processing Pipeline cda1f50d14c3e4658d3a99ffda5b9a9c https://www.encodeproject.org/files/ENCFF311ZJG/@@download/ENCFF311ZJG.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF993JOH fastq reads ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF020AAA 2830548714 Michael Snyder, Stanford 63c6ad81b1ab2437fd81abb6dbd05a1c SRA:SRR6213637 https://www.encodeproject.org/files/ENCFF993JOH/@@download/ENCFF993JOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF031GLY fastq reads ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF835JHL 2977444806 Michael Snyder, Stanford 20bd993add40b7eaf2634ad3e7eff5f8 SRA:SRR6213636 https://www.encodeproject.org/files/ENCFF031GLY/@@download/ENCFF031GLY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF020AAA fastq reads ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF993JOH 2797588089 Michael Snyder, Stanford b768c6c41e952fc00851487d9f83a454 SRA:SRR6213637 https://www.encodeproject.org/files/ENCFF020AAA/@@download/ENCFF020AAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF835JHL fastq reads ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF031GLY 3018915920 Michael Snyder, Stanford d404fcec85d887c253d6d0e6273d3bbe SRA:SRR6213636 https://www.encodeproject.org/files/ENCFF835JHL/@@download/ENCFF835JHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF197XMF bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 100 ENCFF020AAA, ENCFF807MUK, ENCFF993JOH 5231648211 ENCODE Processing Pipeline 076b50e92036e0555fc56b417e956e4e https://www.encodeproject.org/files/ENCFF197XMF/@@download/ENCFF197XMF.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF013XVD bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 100 ENCFF031GLY, ENCFF807MUK, ENCFF835JHL 5540672195 ENCODE Processing Pipeline cc0df5a9a88b7467866661e82e418bc2 https://www.encodeproject.org/files/ENCFF013XVD/@@download/ENCFF013XVD.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF868CVT bigWig signal p-value ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF013XVD, ENCFF449NNE 1245234644 ENCODE Processing Pipeline d123a74a79b2b8e3d2689d3f04451773 https://www.encodeproject.org/files/ENCFF868CVT/@@download/ENCFF868CVT.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF422JWH bigWig signal p-value ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF197XMF, ENCFF999EQI 1213273085 ENCODE Processing Pipeline 6c1e78bf2b07d34d12697a2e8ff9ba20 https://www.encodeproject.org/files/ENCFF422JWH/@@download/ENCFF422JWH.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF743LEQ bigWig signal p-value ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF013XVD, ENCFF197XMF, ENCFF449NNE, ENCFF999EQI 1835368186 ENCODE Processing Pipeline f9d92ef5b75f81c199af0289d4ed5ea2 https://www.encodeproject.org/files/ENCFF743LEQ/@@download/ENCFF743LEQ.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF938IBO bigWig fold change over control ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF013XVD, ENCFF449NNE 1334489361 ENCODE Processing Pipeline 6a1a3009c0a9183b49402169e512fc19 https://www.encodeproject.org/files/ENCFF938IBO/@@download/ENCFF938IBO.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF362WUY bigWig fold change over control ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF197XMF, ENCFF999EQI 1197656447 ENCODE Processing Pipeline 4f7e51eee542c1d1179ed412fa34dd93 https://www.encodeproject.org/files/ENCFF362WUY/@@download/ENCFF362WUY.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF494UFB bigWig fold change over control ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF013XVD, ENCFF197XMF, ENCFF449NNE, ENCFF999EQI 2206451001 ENCODE Processing Pipeline a591b67942b642729979904c16cbd1bc https://www.encodeproject.org/files/ENCFF494UFB/@@download/ENCFF494UFB.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF882RKE bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF013XVD, ENCFF197XMF, ENCFF449NNE, ENCFF999EQI 7128869 ENCODE Processing Pipeline bcbd1aacbb1697405e4953513e41aeb5 https://www.encodeproject.org/files/ENCFF882RKE/@@download/ENCFF882RKE.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF360HFD bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF013XVD, ENCFF449NNE 6301788 ENCODE Processing Pipeline dd4e147d1e01242123f6cbce6a742610 https://www.encodeproject.org/files/ENCFF360HFD/@@download/ENCFF360HFD.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF971KNY bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF197XMF, ENCFF999EQI 6114786 ENCODE Processing Pipeline 804eb3bf0ee83f6438380e6fdce3b5d1 https://www.encodeproject.org/files/ENCFF971KNY/@@download/ENCFF971KNY.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF752REG bigBed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF360HFD 11325550 ENCODE Processing Pipeline d00032a08e591cd5e385f54f9cbcf7f4 https://www.encodeproject.org/files/ENCFF752REG/@@download/ENCFF752REG.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF081GMB bigBed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF971KNY 11332762 ENCODE Processing Pipeline 6a2e5a343c901e7373a143bb6986a8f6 https://www.encodeproject.org/files/ENCFF081GMB/@@download/ENCFF081GMB.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF425UQS bed narrowPeak conservative idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF360HFD, ENCFF882RKE, ENCFF971KNY 14785 ENCODE Processing Pipeline 040cc11f9f0eeb2a3ee71a2dd25ef6a3 https://www.encodeproject.org/files/ENCFF425UQS/@@download/ENCFF425UQS.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF889TNO bigBed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF882RKE 11343725 ENCODE Processing Pipeline b9f23f449d2e7bc2b85f4786729daacf https://www.encodeproject.org/files/ENCFF889TNO/@@download/ENCFF889TNO.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF683RLL bigBed narrowPeak conservative idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF140LHM 75092 ENCODE Processing Pipeline bb754cce33cb9ddfb79a532e81943dda https://www.encodeproject.org/files/ENCFF683RLL/@@download/ENCFF683RLL.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched status, mismatched file status ENCFF706AIM bigBed narrowPeak optimal idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF370TJK 109917 ENCODE Processing Pipeline ec4aa3766ccb3e1d163a15c9b14997ea https://www.encodeproject.org/files/ENCFF706AIM/@@download/ENCFF706AIM.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched status, mismatched file status ENCFF432DIT bed narrowPeak optimal idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF360HFD, ENCFF882RKE, ENCFF971KNY 37138 ENCODE Processing Pipeline e6719c81f02b90d02f1a15c0eff4e0b8 https://www.encodeproject.org/files/ENCFF432DIT/@@download/ENCFF432DIT.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF493KMB bam unfiltered alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 100 ENCFF020AAA, ENCFF643CGH, ENCFF993JOH 6269525550 ENCODE Processing Pipeline 12a2898f89bd233ebd0f442c1403b957 https://www.encodeproject.org/files/ENCFF493KMB/@@download/ENCFF493KMB.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF546AYS bam unfiltered alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 100 ENCFF031GLY, ENCFF643CGH, ENCFF835JHL 6664616850 ENCODE Processing Pipeline 5f8f57de65389f176c965a7a97ea8e06 https://www.encodeproject.org/files/ENCFF546AYS/@@download/ENCFF546AYS.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF767TEU bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 100 ENCFF020AAA, ENCFF643CGH, ENCFF993JOH 5247946507 ENCODE Processing Pipeline 0394afef87e0713384b546dc5aa038ef https://www.encodeproject.org/files/ENCFF767TEU/@@download/ENCFF767TEU.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF076DBU bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 100 ENCFF031GLY, ENCFF643CGH, ENCFF835JHL 5560592684 ENCODE Processing Pipeline e30650d37e0d7cd8e6ca75ffb7848164 https://www.encodeproject.org/files/ENCFF076DBU/@@download/ENCFF076DBU.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF953XWC bigWig signal p-value ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF076DBU, ENCFF190EPQ 1357865234 ENCODE Processing Pipeline 7eba5e61e9a5d6178c0e2d4dcfd5de0e https://www.encodeproject.org/files/ENCFF953XWC/@@download/ENCFF953XWC.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF656WOZ bigWig signal p-value ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF767TEU, ENCFF950AXC 1011525175 ENCODE Processing Pipeline 108f6b42737b7fdc5d5df7a414c7266e https://www.encodeproject.org/files/ENCFF656WOZ/@@download/ENCFF656WOZ.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF915OMB bigWig signal p-value ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF076DBU, ENCFF190EPQ, ENCFF767TEU, ENCFF950AXC 1930950454 ENCODE Processing Pipeline 169c85c4a0d0b126fb500f1bfca14b7f https://www.encodeproject.org/files/ENCFF915OMB/@@download/ENCFF915OMB.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF240YSA bigWig fold change over control ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF076DBU, ENCFF190EPQ 1332999556 ENCODE Processing Pipeline e86a369c802f5170ece88e4524b79c91 https://www.encodeproject.org/files/ENCFF240YSA/@@download/ENCFF240YSA.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF577ZSB bigWig fold change over control ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF767TEU, ENCFF950AXC 1208743331 ENCODE Processing Pipeline 6a7bff64289b9af2c8c33fed9cd8b4f3 https://www.encodeproject.org/files/ENCFF577ZSB/@@download/ENCFF577ZSB.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF680IWA bigWig fold change over control ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF076DBU, ENCFF190EPQ, ENCFF767TEU, ENCFF950AXC 2211840921 ENCODE Processing Pipeline 31d1890242f7ea914838ffd138a2ff7b https://www.encodeproject.org/files/ENCFF680IWA/@@download/ENCFF680IWA.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF335GVV bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF767TEU, ENCFF950AXC 5936966 ENCODE Processing Pipeline 98a2d186a19ddbbe0d62db9acaedf15a https://www.encodeproject.org/files/ENCFF335GVV/@@download/ENCFF335GVV.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF701FIC bigBed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF335GVV 11338576 ENCODE Processing Pipeline e10fbf4977564d38e64ab4080af59fab https://www.encodeproject.org/files/ENCFF701FIC/@@download/ENCFF701FIC.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF988NGZ bigBed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF162FAG 11359783 ENCODE Processing Pipeline b6b39a714fa0098c7963c394d648078f https://www.encodeproject.org/files/ENCFF988NGZ/@@download/ENCFF988NGZ.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF534BAY bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF076DBU, ENCFF190EPQ 6112825 ENCODE Processing Pipeline c03d9d8f50781fdd7951f59213b7257a https://www.encodeproject.org/files/ENCFF534BAY/@@download/ENCFF534BAY.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF162FAG bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF076DBU, ENCFF190EPQ, ENCFF767TEU, ENCFF950AXC 7097782 ENCODE Processing Pipeline ef8cba7b3b4b3c586c5fcad0bc92391b https://www.encodeproject.org/files/ENCFF162FAG/@@download/ENCFF162FAG.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF345UKF bigBed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF534BAY 11319208 ENCODE Processing Pipeline eb5ab65ff44d7593b87a0677096649be https://www.encodeproject.org/files/ENCFF345UKF/@@download/ENCFF345UKF.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF740YJW bigBed narrowPeak conservative idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF049WCA 110648 ENCODE Processing Pipeline 234b1548bdd7320ffb5b7badd1cf837c https://www.encodeproject.org/files/ENCFF740YJW/@@download/ENCFF740YJW.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF944LNI bed narrowPeak optimal idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF162FAG, ENCFF335GVV, ENCFF419RSJ, ENCFF534BAY 42503 ENCODE Processing Pipeline 43a2848bb745c2d80dbbbc9300522790 https://www.encodeproject.org/files/ENCFF944LNI/@@download/ENCFF944LNI.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF049WCA bed narrowPeak conservative idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF162FAG, ENCFF335GVV, ENCFF419RSJ, ENCFF534BAY 19428 ENCODE Processing Pipeline e2f22bf133190c0953763535f81d457c https://www.encodeproject.org/files/ENCFF049WCA/@@download/ENCFF049WCA.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF506OGJ bigBed narrowPeak optimal idr thresholded peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF944LNI 141731 ENCODE Processing Pipeline 37a50101900810f6749a7a198138a317 https://www.encodeproject.org/files/ENCFF506OGJ/@@download/ENCFF506OGJ.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF442EWW fastq reads ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1812022567 Bradley Bernstein, Broad 3dd8027abae04f2a3de47878c83d8778 https://www.encodeproject.org/files/ENCFF442EWW/@@download/ENCFF442EWW.fastq.gz Illumina HiSeq 2500 /files/ENCFF067KOA/, /files/ENCFF142HVK/, /files/ENCFF145VOM/, /files/ENCFF228AVN/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF604ERM fastq reads ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1771644985 Bradley Bernstein, Broad cf7c97b76319a6aba471798e5b6b3029 https://www.encodeproject.org/files/ENCFF604ERM/@@download/ENCFF604ERM.fastq.gz Illumina HiSeq 2500 /files/ENCFF067KOA/, /files/ENCFF142HVK/, /files/ENCFF145VOM/, /files/ENCFF228AVN/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF278BDI bam unfiltered alignments ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF442EWW, ENCFF604ERM, ENCFF807MUK 3321316299 ENCODE Processing Pipeline b83f85d108f0c7cc923a5d5c959b3d71 https://www.encodeproject.org/files/ENCFF278BDI/@@download/ENCFF278BDI.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF721SJQ bam alignments ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF442EWW, ENCFF604ERM, ENCFF807MUK 2744694457 ENCODE Processing Pipeline bbd8b3ed3a7afe55661be664d0a721f8 https://www.encodeproject.org/files/ENCFF721SJQ/@@download/ENCFF721SJQ.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF330RVN bam unfiltered alignments ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF442EWW, ENCFF604ERM, ENCFF643CGH 3328512026 ENCODE Processing Pipeline 5528ef26c0a9a010b3b076cd78a87130 https://www.encodeproject.org/files/ENCFF330RVN/@@download/ENCFF330RVN.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF466DPA bam alignments ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF442EWW, ENCFF604ERM, ENCFF643CGH 2747900452 ENCODE Processing Pipeline 41293c2d2437768b176c5ee9f3e5fa5f https://www.encodeproject.org/files/ENCFF466DPA/@@download/ENCFF466DPA.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF945IDU bed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF687UPN, ENCFF721SJQ 6219710 ENCODE Processing Pipeline bd52af1a09149720674a17d9ebca50e6 https://www.encodeproject.org/files/ENCFF945IDU/@@download/ENCFF945IDU.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF611IFP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF945IDU 517476 ENCODE Processing Pipeline 6bd2d68fdd71a9487b16589e38ef64f2 https://www.encodeproject.org/files/ENCFF611IFP/@@download/ENCFF611IFP.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF129TCP bigWig signal p-value ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF687UPN, ENCFF721SJQ 1001550344 ENCODE Processing Pipeline 4f4ac12e13bd245e69e36439b550081d https://www.encodeproject.org/files/ENCFF129TCP/@@download/ENCFF129TCP.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF848LXD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF611IFP 933870 ENCODE Processing Pipeline 734c2743a8b5dfeba4887fd82f65c3b1 https://www.encodeproject.org/files/ENCFF848LXD/@@download/ENCFF848LXD.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF493QSR bigWig fold change over control ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF687UPN, ENCFF721SJQ 1236998943 ENCODE Processing Pipeline 43418aa32618219776fb0c020e6a8712 https://www.encodeproject.org/files/ENCFF493QSR/@@download/ENCFF493QSR.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF921LJC bigBed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF945IDU 13854307 ENCODE Processing Pipeline 451b1b9ad7063e1c7c61baee04711440 https://www.encodeproject.org/files/ENCFF921LJC/@@download/ENCFF921LJC.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF440WOS bigWig signal p-value ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF305KDB, ENCFF466DPA 1134958653 ENCODE Processing Pipeline b7f7935527e298b7f412db733cb5eeb3 https://www.encodeproject.org/files/ENCFF440WOS/@@download/ENCFF440WOS.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF350ZNU bed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF305KDB, ENCFF466DPA 6221993 ENCODE Processing Pipeline a777f176998a21d2965326fb7e2c9fce https://www.encodeproject.org/files/ENCFF350ZNU/@@download/ENCFF350ZNU.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF945NTG bigWig fold change over control ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF305KDB, ENCFF466DPA 1280200966 ENCODE Processing Pipeline fa1d34604cbea2c59b52494a5f94a158 https://www.encodeproject.org/files/ENCFF945NTG/@@download/ENCFF945NTG.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF089RWQ bigBed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF350ZNU 13867043 ENCODE Processing Pipeline 6552615600963f3c22d80ad0a8ce1259 https://www.encodeproject.org/files/ENCFF089RWQ/@@download/ENCFF089RWQ.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF781YVT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF350ZNU, ENCFF419RSJ 517996 ENCODE Processing Pipeline 4ce9ae911e754e86d8b9c16f161eba44 https://www.encodeproject.org/files/ENCFF781YVT/@@download/ENCFF781YVT.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF660PJB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF781YVT 935337 ENCODE Processing Pipeline a1b8de51695360dd5c53d56919bb594a https://www.encodeproject.org/files/ENCFF660PJB/@@download/ENCFF660PJB.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF763NJP fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 1 ENCFF355EUC 463256157 Michael Snyder, Stanford bfc6c700963a9095532006412dfe5f2d https://www.encodeproject.org/files/ENCFF763NJP/@@download/ENCFF763NJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF939NQU fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 1 ENCFF090LKR 544923579 Michael Snyder, Stanford 0a012bef6036e9c2c6ab86ea2d0c9755 https://www.encodeproject.org/files/ENCFF939NQU/@@download/ENCFF939NQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF090LKR fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 2 ENCFF939NQU 551522272 Michael Snyder, Stanford 9a5e113553b76f76234c1fae2e5847fa https://www.encodeproject.org/files/ENCFF090LKR/@@download/ENCFF090LKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF355EUC fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 2 ENCFF763NJP 474672669 Michael Snyder, Stanford 1ffc1678891f3f37f2041b0ddc87f63d https://www.encodeproject.org/files/ENCFF355EUC/@@download/ENCFF355EUC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF052DTI fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 1 ENCFF160WFY 4061205026 Michael Snyder, Stanford 593a80ac8a89fbc7fb771f762014f4d3 SRA:SRR6212878 https://www.encodeproject.org/files/ENCFF052DTI/@@download/ENCFF052DTI.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF734ILU fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 1 ENCFF936XZX 2627773883 Michael Snyder, Stanford ca6b6bf9d9e221d773da3a0fdcb7b4d5 SRA:SRR6212877 https://www.encodeproject.org/files/ENCFF734ILU/@@download/ENCFF734ILU.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF160WFY fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 1 101 paired-ended 2 ENCFF052DTI 4848337500 Michael Snyder, Stanford f5e2a6ea7603801c7f79dbc461ae2850 SRA:SRR6212878 https://www.encodeproject.org/files/ENCFF160WFY/@@download/ENCFF160WFY.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF936XZX fastq reads ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 1 101 paired-ended 2 ENCFF734ILU 3146669063 Michael Snyder, Stanford af4e6f6ab838338efca4062a9be8233a SRA:SRR6212877 https://www.encodeproject.org/files/ENCFF936XZX/@@download/ENCFF936XZX.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF194TBA bam unfiltered alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF734ILU, ENCFF807MUK, ENCFF936XZX 5534901057 ENCODE Processing Pipeline 07a31bc72b0e50b7cd59382d09baff3b https://www.encodeproject.org/files/ENCFF194TBA/@@download/ENCFF194TBA.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF342NTS bam unfiltered alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF052DTI, ENCFF160WFY, ENCFF807MUK 8107873581 ENCODE Processing Pipeline 16e1fdca9abf24ef9703a58f580ef71f https://www.encodeproject.org/files/ENCFF342NTS/@@download/ENCFF342NTS.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF494YCC bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF734ILU, ENCFF807MUK, ENCFF936XZX 3682972834 ENCODE Processing Pipeline f0c25fdbe2a221985d8999733b36351d https://www.encodeproject.org/files/ENCFF494YCC/@@download/ENCFF494YCC.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF683NGC bam unfiltered alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF643CGH, ENCFF734ILU, ENCFF936XZX 5540340931 ENCODE Processing Pipeline d1978b6d8b5c3833038fcd48338e25ea https://www.encodeproject.org/files/ENCFF683NGC/@@download/ENCFF683NGC.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF846ILV bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF643CGH, ENCFF734ILU, ENCFF936XZX 3686801852 ENCODE Processing Pipeline 79bee442f8faadd468bb083027be6778 https://www.encodeproject.org/files/ENCFF846ILV/@@download/ENCFF846ILV.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF004ZYW bam unfiltered alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF052DTI, ENCFF160WFY, ENCFF643CGH 8112900440 ENCODE Processing Pipeline 49e441cbf126c9a6608ba994bb26ccc3 https://www.encodeproject.org/files/ENCFF004ZYW/@@download/ENCFF004ZYW.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF571UJH bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF052DTI, ENCFF160WFY, ENCFF807MUK 5201367451 ENCODE Processing Pipeline 1d907d5a3e4116123bbe307fd84a0712 https://www.encodeproject.org/files/ENCFF571UJH/@@download/ENCFF571UJH.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF021UNS bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF052DTI, ENCFF160WFY, ENCFF643CGH 5206182037 ENCODE Processing Pipeline b02dc0e3a4140acbb51d6052e2207c8a https://www.encodeproject.org/files/ENCFF021UNS/@@download/ENCFF021UNS.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF607HYG bigWig signal p-value ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF182WHU, ENCFF571UJH 1686781412 ENCODE Processing Pipeline 5f21e200240fd1cbe27807eda1354d22 https://www.encodeproject.org/files/ENCFF607HYG/@@download/ENCFF607HYG.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF278OJQ bigWig signal p-value ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF021UNS, ENCFF810LLR 1355050715 ENCODE Processing Pipeline 2e687f3058f42ec41a701876ba66c866 https://www.encodeproject.org/files/ENCFF278OJQ/@@download/ENCFF278OJQ.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF297BHF bigWig fold change over control ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF182WHU, ENCFF571UJH 1796437790 ENCODE Processing Pipeline b97f4ebeaff17fc6b34ab80edb29325a https://www.encodeproject.org/files/ENCFF297BHF/@@download/ENCFF297BHF.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF187IJM bigWig fold change over control ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF021UNS, ENCFF810LLR 1799952672 ENCODE Processing Pipeline c065e25c4d851c0498d81c477e06bbc6 https://www.encodeproject.org/files/ENCFF187IJM/@@download/ENCFF187IJM.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF811SWN bigWig signal p-value ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF494YCC 1451153881 ENCODE Processing Pipeline 25b2f18f4ff1efebd7ac500f2ebd2bf8 https://www.encodeproject.org/files/ENCFF811SWN/@@download/ENCFF811SWN.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF897VKW bigWig signal p-value ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF810LLR, ENCFF846ILV 1444932040 ENCODE Processing Pipeline 5a47976f28155d83ace54b3b82433a0f https://www.encodeproject.org/files/ENCFF897VKW/@@download/ENCFF897VKW.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF814THW bigWig signal p-value ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF182WHU, ENCFF494YCC, ENCFF571UJH 1921379507 ENCODE Processing Pipeline 0716e248f39cd121805606e2be932fc9 https://www.encodeproject.org/files/ENCFF814THW/@@download/ENCFF814THW.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF429CXB bigWig signal p-value ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF021UNS, ENCFF810LLR, ENCFF846ILV 1956139596 ENCODE Processing Pipeline 80194a819be84eb86fa451fd51bbabbe https://www.encodeproject.org/files/ENCFF429CXB/@@download/ENCFF429CXB.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF510UCU bigWig fold change over control ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF494YCC 1464905847 ENCODE Processing Pipeline 56c68faffa760ad80fdaf8064c6089b8 https://www.encodeproject.org/files/ENCFF510UCU/@@download/ENCFF510UCU.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF216JBN bigWig fold change over control ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF810LLR, ENCFF846ILV 1487231651 ENCODE Processing Pipeline ece1474872364e6c24912bbc839c1a35 https://www.encodeproject.org/files/ENCFF216JBN/@@download/ENCFF216JBN.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF406TUM bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF182WHU, ENCFF571UJH 6952469 ENCODE Processing Pipeline 3427690219ad4f387d833233e8a0e0c3 https://www.encodeproject.org/files/ENCFF406TUM/@@download/ENCFF406TUM.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF630SJS bigBed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF779HVA 11263040 ENCODE Processing Pipeline 1998b30ee22a449fdbb444bf4a3f44b8 https://www.encodeproject.org/files/ENCFF630SJS/@@download/ENCFF630SJS.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF776WHC bigBed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF591WJM 11346658 ENCODE Processing Pipeline 49722b0e23519a5f0f5fb699d240e5fa https://www.encodeproject.org/files/ENCFF776WHC/@@download/ENCFF776WHC.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF765GAL bigBed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF697GTY 11333282 ENCODE Processing Pipeline 5a0227f4be81da7eb7be794f98bed649 https://www.encodeproject.org/files/ENCFF765GAL/@@download/ENCFF765GAL.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF779HVA bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF494YCC 6410845 ENCODE Processing Pipeline 2f5e5fad13fd3735c8e3ac48a9587ce2 https://www.encodeproject.org/files/ENCFF779HVA/@@download/ENCFF779HVA.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF537OBF bigBed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF257CHZ 11323196 ENCODE Processing Pipeline ea3630ff20f00d44b55cff8ec2547ddc https://www.encodeproject.org/files/ENCFF537OBF/@@download/ENCFF537OBF.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF397HGX bigBed narrowPeak conservative idr thresholded peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF686EFW 303747 ENCODE Processing Pipeline d2b4c6beff0ab88215bd94f8abc05663 https://www.encodeproject.org/files/ENCFF397HGX/@@download/ENCFF397HGX.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF306YYW bigBed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF406TUM 11331598 ENCODE Processing Pipeline 2bd0e778b7fb9bb6466489ba28af82f7 https://www.encodeproject.org/files/ENCFF306YYW/@@download/ENCFF306YYW.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF468ZWE bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF810LLR, ENCFF846ILV 6413151 ENCODE Processing Pipeline 1ad75606833718fa59db97dbea9494c6 https://www.encodeproject.org/files/ENCFF468ZWE/@@download/ENCFF468ZWE.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF082VXK bigWig fold change over control ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF182WHU, ENCFF494YCC, ENCFF571UJH 2222484639 ENCODE Processing Pipeline 9ded64a8ba7b905a4f894ac303f52a0c https://www.encodeproject.org/files/ENCFF082VXK/@@download/ENCFF082VXK.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF362TVO bigWig fold change over control ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF021UNS, ENCFF810LLR, ENCFF846ILV 2265690450 ENCODE Processing Pipeline d1bdc1c8f65381b3c0aefcc6d596abc1 https://www.encodeproject.org/files/ENCFF362TVO/@@download/ENCFF362TVO.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF911RTR bed narrowPeak optimal idr thresholded peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF001TDO, ENCFF257CHZ, ENCFF406TUM, ENCFF779HVA 149011 ENCODE Processing Pipeline 2e98f3399dc33aa790ee39df5337bb39 https://www.encodeproject.org/files/ENCFF911RTR/@@download/ENCFF911RTR.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF673RPK bigBed narrowPeak optimal idr thresholded peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF725WVP 308380 ENCODE Processing Pipeline 083d8bb7610d69fe5e6444bb1470109b https://www.encodeproject.org/files/ENCFF673RPK/@@download/ENCFF673RPK.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF257CHZ bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF182WHU, ENCFF494YCC, ENCFF571UJH 7220764 ENCODE Processing Pipeline a39fd071243b3e2c38190b56e97aa946 https://www.encodeproject.org/files/ENCFF257CHZ/@@download/ENCFF257CHZ.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF387YIU bigBed narrowPeak optimal idr thresholded peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF911RTR 309999 ENCODE Processing Pipeline ad6814c2e2b1ecc0fc7c3a10766b0969 https://www.encodeproject.org/files/ENCFF387YIU/@@download/ENCFF387YIU.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF591WJM bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF021UNS, ENCFF810LLR 6954279 ENCODE Processing Pipeline c224cdfb6b3d0203197e714c218b6698 https://www.encodeproject.org/files/ENCFF591WJM/@@download/ENCFF591WJM.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF697GTY bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF021UNS, ENCFF810LLR, ENCFF846ILV 7224085 ENCODE Processing Pipeline d778fed0bfe3cd28a72361d5f02ac5be https://www.encodeproject.org/files/ENCFF697GTY/@@download/ENCFF697GTY.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF687UJI bigBed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF468ZWE 11279256 ENCODE Processing Pipeline 0804888aeb02c69fb336470a12e7cb20 https://www.encodeproject.org/files/ENCFF687UJI/@@download/ENCFF687UJI.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF686EFW bed narrowPeak conservative idr thresholded peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF001TDO, ENCFF257CHZ, ENCFF406TUM, ENCFF779HVA 144464 ENCODE Processing Pipeline 372f20c246de1ac63728202f2ef69e96 https://www.encodeproject.org/files/ENCFF686EFW/@@download/ENCFF686EFW.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF725WVP bed narrowPeak optimal idr thresholded peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF468ZWE, ENCFF591WJM, ENCFF697GTY 146017 ENCODE Processing Pipeline 1764c747e1d9b171616c6e42d6a829cb https://www.encodeproject.org/files/ENCFF725WVP/@@download/ENCFF725WVP.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF936NXE bam unfiltered alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF484GUE, ENCFF539DMV, ENCFF807MUK 6536438328 ENCODE Processing Pipeline 1fc221d9d9f3b9b5744833f612d6df10 https://www.encodeproject.org/files/ENCFF936NXE/@@download/ENCFF936NXE.bam hg19 released ENCFF539DMV fastq reads ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 1 ENCFF484GUE 3036280247 Michael Snyder, Stanford 824ef14642e49d6ce3c9cec21e24eb8d SRA:SRR5111199 https://www.encodeproject.org/files/ENCFF539DMV/@@download/ENCFF539DMV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF484GUE fastq reads ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 2 ENCFF539DMV 3121335437 Michael Snyder, Stanford 5bba043a4a0832437808731e0829ed90 SRA:SRR5111199 https://www.encodeproject.org/files/ENCFF484GUE/@@download/ENCFF484GUE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF163OQM fastq reads ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF633IRT 1864108088 Michael Snyder, Stanford 27f572213f85a281e6f958420b0684d4 SRA:SRR5111198 https://www.encodeproject.org/files/ENCFF163OQM/@@download/ENCFF163OQM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF633IRT fastq reads ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF163OQM 1885631687 Michael Snyder, Stanford 41ef25e727b68fd92c07618fe7363e09 SRA:SRR5111198 https://www.encodeproject.org/files/ENCFF633IRT/@@download/ENCFF633IRT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF092BZM bam unfiltered alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF163OQM, ENCFF633IRT, ENCFF807MUK 4201528327 ENCODE Processing Pipeline 7dbdf13badb825fa79e48581ec85d9c7 https://www.encodeproject.org/files/ENCFF092BZM/@@download/ENCFF092BZM.bam hg19 released ENCFF687COF bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF163OQM, ENCFF633IRT, ENCFF807MUK 3697397365 ENCODE Processing Pipeline 8bd22e32d82ed2aac0c7b05f5d8f8f0b https://www.encodeproject.org/files/ENCFF687COF/@@download/ENCFF687COF.bam hg19 released ENCFF403JKC bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF484GUE, ENCFF539DMV, ENCFF807MUK 5398740748 ENCODE Processing Pipeline d6e141fce46bb243d377319a13513410 https://www.encodeproject.org/files/ENCFF403JKC/@@download/ENCFF403JKC.bam hg19 released ENCFF219WNU bigWig signal p-value ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF687COF 1028550198 ENCODE Processing Pipeline 541a7e84bc817d274d756e780cf4ce76 https://www.encodeproject.org/files/ENCFF219WNU/@@download/ENCFF219WNU.bigWig hg19 released ENCFF646BDY bigWig signal p-value ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF049MPQ, ENCFF403JKC 1239313050 ENCODE Processing Pipeline b23a0edb327cb46c1f7de0b4c1aafa68 https://www.encodeproject.org/files/ENCFF646BDY/@@download/ENCFF646BDY.bigWig hg19 released ENCFF747UIC bigWig signal p-value ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF049MPQ, ENCFF403JKC, ENCFF583FAG, ENCFF687COF 1866300004 ENCODE Processing Pipeline 24ed9277d48573a7d49be3873987480d https://www.encodeproject.org/files/ENCFF747UIC/@@download/ENCFF747UIC.bigWig hg19 released ENCFF605IET bigWig fold change over control ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF687COF 1017210899 ENCODE Processing Pipeline 00433e848d30459cf92dca5d9b4041cc https://www.encodeproject.org/files/ENCFF605IET/@@download/ENCFF605IET.bigWig hg19 released ENCFF862EDR bigWig fold change over control ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF049MPQ, ENCFF403JKC 1317561201 ENCODE Processing Pipeline 64f76754aabbda6f0441d0b260d63232 https://www.encodeproject.org/files/ENCFF862EDR/@@download/ENCFF862EDR.bigWig hg19 released ENCFF711PMS bigWig fold change over control ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF049MPQ, ENCFF403JKC, ENCFF583FAG, ENCFF687COF 2136993899 ENCODE Processing Pipeline 8cb5c360bf390a6a4e7b98b4bf4be8b7 https://www.encodeproject.org/files/ENCFF711PMS/@@download/ENCFF711PMS.bigWig hg19 released ENCFF241NLT bam unfiltered alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF163OQM, ENCFF633IRT, ENCFF643CGH 4209818043 ENCODE Processing Pipeline 38b69e6bec5dfc7a56b1d9bc796cef25 https://www.encodeproject.org/files/ENCFF241NLT/@@download/ENCFF241NLT.bam GRCh38 released ENCFF388CCA bam unfiltered alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF484GUE, ENCFF539DMV, ENCFF643CGH 6545458968 ENCODE Processing Pipeline 636850e29e97ffcac36857538043db4c https://www.encodeproject.org/files/ENCFF388CCA/@@download/ENCFF388CCA.bam GRCh38 released ENCFF132SYW bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF163OQM, ENCFF633IRT, ENCFF643CGH 3699964368 ENCODE Processing Pipeline a03a7666bc5f95de62f617d4606b321a https://www.encodeproject.org/files/ENCFF132SYW/@@download/ENCFF132SYW.bam GRCh38 released ENCFF767EZN bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF484GUE, ENCFF539DMV, ENCFF643CGH 5403186059 ENCODE Processing Pipeline 1be45fda0a273df5c36e388a6bd73521 https://www.encodeproject.org/files/ENCFF767EZN/@@download/ENCFF767EZN.bam GRCh38 released ENCFF404TRO bigWig signal p-value ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF132SYW, ENCFF426RDP 845147651 ENCODE Processing Pipeline e09fae0f663fcd65f9763c2191acdd78 https://www.encodeproject.org/files/ENCFF404TRO/@@download/ENCFF404TRO.bigWig GRCh38 released ENCFF709LIT bigWig signal p-value ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF291AFY, ENCFF767EZN 1261556086 ENCODE Processing Pipeline f9b39b5b069ac42478fb8a3738507ad2 https://www.encodeproject.org/files/ENCFF709LIT/@@download/ENCFF709LIT.bigWig GRCh38 released ENCFF624KXG bigWig signal p-value ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF132SYW, ENCFF291AFY, ENCFF426RDP, ENCFF767EZN 1798269229 ENCODE Processing Pipeline e556c386cb5ca42c525ec619545212c0 https://www.encodeproject.org/files/ENCFF624KXG/@@download/ENCFF624KXG.bigWig GRCh38 released ENCFF463DHP bigWig fold change over control ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF132SYW, ENCFF426RDP 1017615424 ENCODE Processing Pipeline 44d4cd0485605ca3f1b935bebdbc4a3b https://www.encodeproject.org/files/ENCFF463DHP/@@download/ENCFF463DHP.bigWig GRCh38 released ENCFF260HXU bigWig fold change over control ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF291AFY, ENCFF767EZN 1319330459 ENCODE Processing Pipeline fb5fdefd3c675fd86a43a2e4d060c49f https://www.encodeproject.org/files/ENCFF260HXU/@@download/ENCFF260HXU.bigWig GRCh38 released ENCFF478YJL bigWig fold change over control ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF132SYW, ENCFF291AFY, ENCFF426RDP, ENCFF767EZN 2139782158 ENCODE Processing Pipeline a233aaa2f7ddcc3cd1831d3fc02dbe10 https://www.encodeproject.org/files/ENCFF478YJL/@@download/ENCFF478YJL.bigWig GRCh38 released ENCFF913TIW bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF291AFY, ENCFF767EZN 6401632 ENCODE Processing Pipeline 384722e6730ac3263de7014563c27d2b https://www.encodeproject.org/files/ENCFF913TIW/@@download/ENCFF913TIW.bed.gz GRCh38 released ENCFF757DXV bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF132SYW, ENCFF291AFY, ENCFF426RDP, ENCFF767EZN 7061758 ENCODE Processing Pipeline 4756e23c957f3e1fe52c2de48fafde36 https://www.encodeproject.org/files/ENCFF757DXV/@@download/ENCFF757DXV.bed.gz GRCh38 released ENCFF740ZZT bigBed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF296QFE 11275661 ENCODE Processing Pipeline 2456a4aecf73c92d13a30a7c6f5e494c https://www.encodeproject.org/files/ENCFF740ZZT/@@download/ENCFF740ZZT.bigBed GRCh38 released ENCFF981HWB bigBed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF913TIW 11036291 ENCODE Processing Pipeline 25013c9a76abbb65deadc0e5de62b476 https://www.encodeproject.org/files/ENCFF981HWB/@@download/ENCFF981HWB.bigBed GRCh38 released ENCFF296QFE bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF132SYW, ENCFF426RDP 5773336 ENCODE Processing Pipeline 2a94b917426d8b232c2251c241dd1c69 https://www.encodeproject.org/files/ENCFF296QFE/@@download/ENCFF296QFE.bed.gz GRCh38 released ENCFF436XXZ bigBed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF757DXV 11155478 ENCODE Processing Pipeline d046ac37438cca4f86d527c91193a47c https://www.encodeproject.org/files/ENCFF436XXZ/@@download/ENCFF436XXZ.bigBed GRCh38 released ENCFF182QJW bed narrowPeak conservative idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF296QFE, ENCFF419RSJ, ENCFF757DXV, ENCFF913TIW 100748 ENCODE Processing Pipeline cf53872469d5a6fcd48275e3cc08ce24 https://www.encodeproject.org/files/ENCFF182QJW/@@download/ENCFF182QJW.bed.gz GRCh38 released ENCFF813IDQ bigBed narrowPeak conservative idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF182QJW 220176 ENCODE Processing Pipeline 0fd85f4bd73086d8445a365b73898b13 https://www.encodeproject.org/files/ENCFF813IDQ/@@download/ENCFF813IDQ.bigBed GRCh38 released ENCFF128ITB bigBed narrowPeak optimal idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF269RME 307362 ENCODE Processing Pipeline ce6b098eee602dafde6ab55fdf1f1c62 https://www.encodeproject.org/files/ENCFF128ITB/@@download/ENCFF128ITB.bigBed GRCh38 released ENCFF269RME bed narrowPeak optimal idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF296QFE, ENCFF419RSJ, ENCFF757DXV, ENCFF913TIW 123056 ENCODE Processing Pipeline a98d2e5850b0ff2ec4e3117bc53793e7 https://www.encodeproject.org/files/ENCFF269RME/@@download/ENCFF269RME.bed.gz GRCh38 released ENCFF187EXP bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF049MPQ, ENCFF403JKC 6409365 ENCODE Processing Pipeline d2a8686a00b93215a75148e7689aaee2 https://www.encodeproject.org/files/ENCFF187EXP/@@download/ENCFF187EXP.bed.gz hg19 released ENCFF444PKI bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF687COF 5770378 ENCODE Processing Pipeline a2ebc03941cc80f3aa2c12a4b8410b39 https://www.encodeproject.org/files/ENCFF444PKI/@@download/ENCFF444PKI.bed.gz hg19 released ENCFF637EXU bigBed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 ENCFF187EXP 11028080 ENCODE Processing Pipeline 68e5b03e2bd869205983b82bdde52c1a https://www.encodeproject.org/files/ENCFF637EXU/@@download/ENCFF637EXU.bigBed hg19 released ENCFF526HFA bed narrowPeak conservative idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF001TDO, ENCFF187EXP, ENCFF444PKI, ENCFF466LLW 100412 ENCODE Processing Pipeline b562e019ed35d940ad414835ebc04357 https://www.encodeproject.org/files/ENCFF526HFA/@@download/ENCFF526HFA.bed.gz hg19 released ENCFF651PWG bed narrowPeak optimal idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF001TDO, ENCFF187EXP, ENCFF444PKI, ENCFF466LLW 120459 ENCODE Processing Pipeline f02c4a616c04a2ab5784f3edd9a3c916 https://www.encodeproject.org/files/ENCFF651PWG/@@download/ENCFF651PWG.bed.gz hg19 released ENCFF030YCM bigBed narrowPeak optimal idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF651PWG 301392 ENCODE Processing Pipeline 268bb5940afedf94dd700a988e01aa2e https://www.encodeproject.org/files/ENCFF030YCM/@@download/ENCFF030YCM.bigBed hg19 released ENCFF466LLW bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF049MPQ, ENCFF403JKC, ENCFF583FAG, ENCFF687COF 7057406 ENCODE Processing Pipeline fe23516fd0c4ec07107cc825800a8f36 https://www.encodeproject.org/files/ENCFF466LLW/@@download/ENCFF466LLW.bed.gz hg19 released ENCFF152OFN bigBed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF444PKI 11256617 ENCODE Processing Pipeline 0200d6b6dc1418ee9ff3a9eefe0d1785 https://www.encodeproject.org/files/ENCFF152OFN/@@download/ENCFF152OFN.bigBed hg19 released ENCFF582LCW bigBed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF466LLW 11142571 ENCODE Processing Pipeline 1460f5cd393943b6495e9f8e43f53f6b https://www.encodeproject.org/files/ENCFF582LCW/@@download/ENCFF582LCW.bigBed hg19 released ENCFF335HPG bigBed narrowPeak conservative idr thresholded peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1, 3 ENCFF526HFA 218090 ENCODE Processing Pipeline 36dedb04b39d14675f8420e6ed34751f https://www.encodeproject.org/files/ENCFF335HPG/@@download/ENCFF335HPG.bigBed hg19 released ENCFF086EMX bam unfiltered alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF164JCA, ENCFF344DMA, ENCFF807MUK 3810245359 ENCODE Processing Pipeline 9170df017cf9f3918b021aa086bd1617 https://www.encodeproject.org/files/ENCFF086EMX/@@download/ENCFF086EMX.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF681LIU bam unfiltered alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF260CTF, ENCFF807MUK, ENCFF959CFI 4270921722 ENCODE Processing Pipeline 34c8ef81c09d4790502c1d57762f7cd0 https://www.encodeproject.org/files/ENCFF681LIU/@@download/ENCFF681LIU.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF959CFI fastq reads ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF260CTF 1970922229 Michael Snyder, Stanford ca86d98fa40984b617cd3f3ccfb94b69 SRA:SRR5111695 https://www.encodeproject.org/files/ENCFF959CFI/@@download/ENCFF959CFI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth ENCFF260CTF fastq reads ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF959CFI 1990292131 Michael Snyder, Stanford 6dc54782342e78c9c06f55c0885e307c SRA:SRR5111695 https://www.encodeproject.org/files/ENCFF260CTF/@@download/ENCFF260CTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth ENCFF344DMA fastq reads ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF164JCA 1682223921 Michael Snyder, Stanford d5ad9ccc1f263d24f4b164d602fbe7a6 SRA:SRR5111696 https://www.encodeproject.org/files/ENCFF344DMA/@@download/ENCFF344DMA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth ENCFF164JCA fastq reads ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF344DMA 1755299366 Michael Snyder, Stanford 4d9478fcf4d4fd696f1c116d364f98b7 SRA:SRR5111696 https://www.encodeproject.org/files/ENCFF164JCA/@@download/ENCFF164JCA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth ENCFF599UMI bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF260CTF, ENCFF807MUK, ENCFF959CFI 3328064038 ENCODE Processing Pipeline dd163be14c67ac70ccb4b736f4185bd5 https://www.encodeproject.org/files/ENCFF599UMI/@@download/ENCFF599UMI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF928REO bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF164JCA, ENCFF344DMA, ENCFF807MUK 3267135358 ENCODE Processing Pipeline ef18442585702fcf79cdf5c60033b16e https://www.encodeproject.org/files/ENCFF928REO/@@download/ENCFF928REO.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF367JTQ bigWig signal p-value ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF581ZJL, ENCFF599UMI 1124953742 ENCODE Processing Pipeline 7f846f9386d5079f6f658fdc94ac10a4 https://www.encodeproject.org/files/ENCFF367JTQ/@@download/ENCFF367JTQ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF242SUG bigWig signal p-value ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF928REO 987429842 ENCODE Processing Pipeline af834dd4bcf09ba01103a69abfe53667 https://www.encodeproject.org/files/ENCFF242SUG/@@download/ENCFF242SUG.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF120FED bigWig signal p-value ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF599UMI, ENCFF928REO 1565241542 ENCODE Processing Pipeline 873526977153ef3a793852ff6b657fc5 https://www.encodeproject.org/files/ENCFF120FED/@@download/ENCFF120FED.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF582QDN bigWig fold change over control ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF581ZJL, ENCFF599UMI 993805942 ENCODE Processing Pipeline 3c3330e9f6509a54bbe90ae1fc57ca3c https://www.encodeproject.org/files/ENCFF582QDN/@@download/ENCFF582QDN.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF357DIT bigWig fold change over control ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF928REO 987156703 ENCODE Processing Pipeline 5f791f06209affa65f143d0572045b92 https://www.encodeproject.org/files/ENCFF357DIT/@@download/ENCFF357DIT.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF688YSP bigWig fold change over control ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF599UMI, ENCFF928REO 1892643464 ENCODE Processing Pipeline 5589d26fcfe2a17d700896b5f1769b99 https://www.encodeproject.org/files/ENCFF688YSP/@@download/ENCFF688YSP.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF188GHO bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF928REO 6860119 ENCODE Processing Pipeline fd59c3000d29184e8110f9bdc7c6ecc8 https://www.encodeproject.org/files/ENCFF188GHO/@@download/ENCFF188GHO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF451DBC bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF599UMI, ENCFF928REO 7143490 ENCODE Processing Pipeline 4e4e927c22ff9106926871ad25ca7a9f https://www.encodeproject.org/files/ENCFF451DBC/@@download/ENCFF451DBC.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF632VHL bigBed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF158PJI 11391405 ENCODE Processing Pipeline 9e7f41d74cc46fc2fd42eb60b73db6d2 https://www.encodeproject.org/files/ENCFF632VHL/@@download/ENCFF632VHL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF951AAA bigBed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF188GHO 13220404 ENCODE Processing Pipeline 81da02c7c2f51f4a27bbb408333d9cf4 https://www.encodeproject.org/files/ENCFF951AAA/@@download/ENCFF951AAA.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF158PJI bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF581ZJL, ENCFF599UMI 6292302 ENCODE Processing Pipeline 5817bd2bc47a0d98ce9dbc84ff763fe4 https://www.encodeproject.org/files/ENCFF158PJI/@@download/ENCFF158PJI.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF511KTE bigBed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF451DBC 13088863 ENCODE Processing Pipeline 3b4e0d9602f2b1a43b6835f224469139 https://www.encodeproject.org/files/ENCFF511KTE/@@download/ENCFF511KTE.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF156DFG bam unfiltered alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF164JCA, ENCFF344DMA, ENCFF643CGH 3814068462 ENCODE Processing Pipeline ef5a1855a95581e1290ae9e2c4de734e https://www.encodeproject.org/files/ENCFF156DFG/@@download/ENCFF156DFG.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF718ARO bam unfiltered alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF260CTF, ENCFF643CGH, ENCFF959CFI 4273991045 ENCODE Processing Pipeline b72d5e9899c5e578fe1907bb24126b3b https://www.encodeproject.org/files/ENCFF718ARO/@@download/ENCFF718ARO.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF563FZR bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF164JCA, ENCFF344DMA, ENCFF643CGH 3269628811 ENCODE Processing Pipeline 1acefed48b146bee9666e763cd9f8d7b https://www.encodeproject.org/files/ENCFF563FZR/@@download/ENCFF563FZR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF373AFZ bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF260CTF, ENCFF643CGH, ENCFF959CFI 3329641808 ENCODE Processing Pipeline a363eb22f07745c63d028b3d1c792ae6 https://www.encodeproject.org/files/ENCFF373AFZ/@@download/ENCFF373AFZ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF460PUQ bigWig signal p-value ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF373AFZ, ENCFF910IKB 1108992264 ENCODE Processing Pipeline 67ad6a388ac88a06dee184646757f483 https://www.encodeproject.org/files/ENCFF460PUQ/@@download/ENCFF460PUQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF506HWT bigWig signal p-value ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF563FZR 976242607 ENCODE Processing Pipeline 428d0a4633fcec1d395f076eba79dd16 https://www.encodeproject.org/files/ENCFF506HWT/@@download/ENCFF506HWT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF883WBQ bigWig signal p-value ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF227IZS, ENCFF373AFZ, ENCFF563FZR, ENCFF910IKB 1755126266 ENCODE Processing Pipeline b07e0772f1a762aa9aa786b96d4ecfa7 https://www.encodeproject.org/files/ENCFF883WBQ/@@download/ENCFF883WBQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF431AVN bigWig fold change over control ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF373AFZ, ENCFF910IKB 991389093 ENCODE Processing Pipeline d5d1e9de34b6579eebf8cd87c6d2b622 https://www.encodeproject.org/files/ENCFF431AVN/@@download/ENCFF431AVN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF783FOE bigWig fold change over control ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF563FZR 994230530 ENCODE Processing Pipeline 9218732a3703fdb5fe7362808844b756 https://www.encodeproject.org/files/ENCFF783FOE/@@download/ENCFF783FOE.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF523BNY bigWig fold change over control ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF227IZS, ENCFF373AFZ, ENCFF563FZR, ENCFF910IKB 1894665941 ENCODE Processing Pipeline 9d69ef9c744b3670dd2e407fd57139c0 https://www.encodeproject.org/files/ENCFF523BNY/@@download/ENCFF523BNY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF327NEA bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF373AFZ, ENCFF910IKB 6150060 ENCODE Processing Pipeline 7fe57bd5d92128f13b9d59975aae8ad2 https://www.encodeproject.org/files/ENCFF327NEA/@@download/ENCFF327NEA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF640PWR bigBed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF327NEA 11395114 ENCODE Processing Pipeline 4cd0340625876176b4af97b56c5483b7 https://www.encodeproject.org/files/ENCFF640PWR/@@download/ENCFF640PWR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF060MAZ bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF227IZS, ENCFF563FZR 6723612 ENCODE Processing Pipeline 1279efdb9aaa9db46c04750a0a805be1 https://www.encodeproject.org/files/ENCFF060MAZ/@@download/ENCFF060MAZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF793PES bigBed narrowPeak conservative idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF606WYG 767430 ENCODE Processing Pipeline c8fb2a814f9c403629764d01e22e5f84 https://www.encodeproject.org/files/ENCFF793PES/@@download/ENCFF793PES.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF738BXO bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF227IZS, ENCFF373AFZ, ENCFF563FZR, ENCFF910IKB 7155862 ENCODE Processing Pipeline 14df7082ddd06acdb544ec1b9b0c008a https://www.encodeproject.org/files/ENCFF738BXO/@@download/ENCFF738BXO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF816WLZ bigBed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF060MAZ 13178662 ENCODE Processing Pipeline e7e249bc656855d84ef77b77d3eced5a https://www.encodeproject.org/files/ENCFF816WLZ/@@download/ENCFF816WLZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF981COV bigBed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF738BXO 13135619 ENCODE Processing Pipeline 0a6067995ef239473ede180255fd9a02 https://www.encodeproject.org/files/ENCFF981COV/@@download/ENCFF981COV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF606WYG bed narrowPeak conservative idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF060MAZ, ENCFF327NEA, ENCFF419RSJ, ENCFF738BXO 352017 ENCODE Processing Pipeline c6cbfb388bba0fa6bb93bfb303a38b28 https://www.encodeproject.org/files/ENCFF606WYG/@@download/ENCFF606WYG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF490EQR bed narrowPeak optimal idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF060MAZ, ENCFF327NEA, ENCFF419RSJ, ENCFF738BXO 413118 ENCODE Processing Pipeline 8e7d965948f669a017bdd7bc2b7685dd https://www.encodeproject.org/files/ENCFF490EQR/@@download/ENCFF490EQR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF807MGO bigBed narrowPeak optimal idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF490EQR 867316 ENCODE Processing Pipeline 9540df3e6dd1c36fa360a1fa4a0ec107 https://www.encodeproject.org/files/ENCFF807MGO/@@download/ENCFF807MGO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF492GXZ bed narrowPeak optimal idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF158PJI, ENCFF188GHO, ENCFF451DBC 368132 ENCODE Processing Pipeline 78f64e4354c002e60b1ba43e77ebe73c https://www.encodeproject.org/files/ENCFF492GXZ/@@download/ENCFF492GXZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF078OFT bigBed narrowPeak optimal idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF492GXZ 634752 ENCODE Processing Pipeline 14f1ec579c429f5c435b1e53cbd40e24 https://www.encodeproject.org/files/ENCFF078OFT/@@download/ENCFF078OFT.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF960WIT bed narrowPeak conservative idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF158PJI, ENCFF188GHO, ENCFF451DBC 311177 ENCODE Processing Pipeline 097a863b523b10d3ecf4bbba3e058663 https://www.encodeproject.org/files/ENCFF960WIT/@@download/ENCFF960WIT.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF624QOU bigBed narrowPeak conservative idr thresholded peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF960WIT 563252 ENCODE Processing Pipeline f067d02bd0d1d32939bbbf45a8630644 https://www.encodeproject.org/files/ENCFF624QOU/@@download/ENCFF624QOU.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF495CGB bam unfiltered alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 100 ENCFF473SIW, ENCFF807MUK, ENCFF993SXO 7511302241 ENCODE Processing Pipeline 73281d3e70e53116f0342e6ad4e7c3d9 https://www.encodeproject.org/files/ENCFF495CGB/@@download/ENCFF495CGB.bam hg19 released borderline replicate concordance ENCFF753ZSN bam unfiltered alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 100 ENCFF501XST, ENCFF563CUE, ENCFF807MUK 8915250525 ENCODE Processing Pipeline bf153931ab446eeb5a5bda8417033981 https://www.encodeproject.org/files/ENCFF753ZSN/@@download/ENCFF753ZSN.bam hg19 released borderline replicate concordance ENCFF501XST fastq reads ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 1 100 paired-ended 1 ENCFF563CUE 4058129787 Michael Snyder, Stanford 92ccee6699d45a5b961ea16a5cb03d9f SRA:SRR6212698 https://www.encodeproject.org/files/ENCFF501XST/@@download/ENCFF501XST.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released borderline replicate concordance ENCFF563CUE fastq reads ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 1 100 paired-ended 2 ENCFF501XST 4179465029 Michael Snyder, Stanford 8c40d3be14271ec31060cecc8db9401f SRA:SRR6212698 https://www.encodeproject.org/files/ENCFF563CUE/@@download/ENCFF563CUE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released borderline replicate concordance ENCFF993SXO fastq reads ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 1 100 paired-ended 2 ENCFF473SIW 3494105989 Michael Snyder, Stanford 979017c1f40d62f6b358623d19184171 SRA:SRR6212697 https://www.encodeproject.org/files/ENCFF993SXO/@@download/ENCFF993SXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released borderline replicate concordance ENCFF473SIW fastq reads ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 1 100 paired-ended 1 ENCFF993SXO 3396143201 Michael Snyder, Stanford be7be2bd18fae66524634082e5e0398e SRA:SRR6212697 https://www.encodeproject.org/files/ENCFF473SIW/@@download/ENCFF473SIW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released borderline replicate concordance ENCFF531OJP bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 100 ENCFF473SIW, ENCFF807MUK, ENCFF993SXO 6215617125 ENCODE Processing Pipeline a293db540e0b76b79a77618df1859cec https://www.encodeproject.org/files/ENCFF531OJP/@@download/ENCFF531OJP.bam hg19 released borderline replicate concordance ENCFF407PCP bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 100 ENCFF501XST, ENCFF563CUE, ENCFF807MUK 7343210581 ENCODE Processing Pipeline 3fd48717ea28215f784d76336b70d7b2 https://www.encodeproject.org/files/ENCFF407PCP/@@download/ENCFF407PCP.bam hg19 released borderline replicate concordance ENCFF572FRG bigWig signal p-value ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF407PCP, ENCFF449NNE, ENCFF999EQI 1914137823 ENCODE Processing Pipeline 3f121905a9d4647c73356e577e4a79f9 https://www.encodeproject.org/files/ENCFF572FRG/@@download/ENCFF572FRG.bigWig hg19 released borderline replicate concordance ENCFF656XVT bigWig signal p-value ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF449NNE, ENCFF531OJP 1331468783 ENCODE Processing Pipeline e41d09ff4f83243d74f5c0717d25427c https://www.encodeproject.org/files/ENCFF656XVT/@@download/ENCFF656XVT.bigWig hg19 released borderline replicate concordance ENCFF390FRX bigWig signal p-value ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF407PCP, ENCFF449NNE, ENCFF531OJP, ENCFF999EQI 2399412168 ENCODE Processing Pipeline c09b8c51469be03462f591c09d22a147 https://www.encodeproject.org/files/ENCFF390FRX/@@download/ENCFF390FRX.bigWig hg19 released borderline replicate concordance ENCFF294PBO bigWig fold change over control ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF407PCP, ENCFF449NNE, ENCFF999EQI 1904440726 ENCODE Processing Pipeline b0c3ce64a06754e5783b79fe80a06a5a https://www.encodeproject.org/files/ENCFF294PBO/@@download/ENCFF294PBO.bigWig hg19 released borderline replicate concordance ENCFF779XHK bigWig fold change over control ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF449NNE, ENCFF531OJP 1442855453 ENCODE Processing Pipeline 2d7b6016d8ec9b893e02918d689e9079 https://www.encodeproject.org/files/ENCFF779XHK/@@download/ENCFF779XHK.bigWig hg19 released borderline replicate concordance ENCFF177KNX bigWig fold change over control ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF407PCP, ENCFF449NNE, ENCFF531OJP, ENCFF999EQI 2441822569 ENCODE Processing Pipeline 36c26ec81e686289b6b5c70b8e253e8a https://www.encodeproject.org/files/ENCFF177KNX/@@download/ENCFF177KNX.bigWig hg19 released borderline replicate concordance ENCFF738RRZ bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF449NNE, ENCFF531OJP 6652007 ENCODE Processing Pipeline 61e65fdff9a41b75701c08c2fb0184a3 https://www.encodeproject.org/files/ENCFF738RRZ/@@download/ENCFF738RRZ.bed.gz hg19 archived borderline replicate concordance ENCFF757NLE bigBed narrowPeak optimal idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF816GRJ 149503 ENCODE Processing Pipeline bf4f42a7c63982d31e6402bb21b1ac3a https://www.encodeproject.org/files/ENCFF757NLE/@@download/ENCFF757NLE.bigBed hg19 archived borderline replicate concordance ENCFF197WCL bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF407PCP, ENCFF449NNE, ENCFF999EQI 6848013 ENCODE Processing Pipeline 24b41a71b36a58614ef4b674a06586b8 https://www.encodeproject.org/files/ENCFF197WCL/@@download/ENCFF197WCL.bed.gz hg19 archived borderline replicate concordance ENCFF030UIB bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF407PCP, ENCFF449NNE, ENCFF531OJP, ENCFF999EQI 7301789 ENCODE Processing Pipeline 1e5b83c27b963d772dfc3b9daeea3882 https://www.encodeproject.org/files/ENCFF030UIB/@@download/ENCFF030UIB.bed.gz hg19 archived borderline replicate concordance ENCFF138JAZ bed narrowPeak conservative idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF030UIB, ENCFF197WCL, ENCFF738RRZ 22773 ENCODE Processing Pipeline 150019fc40156ccd1d4338814c6322db https://www.encodeproject.org/files/ENCFF138JAZ/@@download/ENCFF138JAZ.bed.gz hg19 archived borderline replicate concordance ENCFF072LWE bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF197WCL 11308594 ENCODE Processing Pipeline 17a339d390edfd2cc297aa56bdc51a9b https://www.encodeproject.org/files/ENCFF072LWE/@@download/ENCFF072LWE.bigBed hg19 archived borderline replicate concordance ENCFF827AUC bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF738RRZ 11401082 ENCODE Processing Pipeline 3770ad49e48dd1dadbca81875ceedceb https://www.encodeproject.org/files/ENCFF827AUC/@@download/ENCFF827AUC.bigBed hg19 archived borderline replicate concordance ENCFF167GZJ bigBed narrowPeak conservative idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF138JAZ 87323 ENCODE Processing Pipeline e338711dd9e5c187e29f9293e8e3ad20 https://www.encodeproject.org/files/ENCFF167GZJ/@@download/ENCFF167GZJ.bigBed hg19 archived borderline replicate concordance ENCFF990KGP bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF030UIB 11323099 ENCODE Processing Pipeline a1d97e52302c4af18683efb844c30982 https://www.encodeproject.org/files/ENCFF990KGP/@@download/ENCFF990KGP.bigBed hg19 archived borderline replicate concordance ENCFF816GRJ bed narrowPeak optimal idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF030UIB, ENCFF197WCL, ENCFF738RRZ 49942 ENCODE Processing Pipeline b1c3e005f164c4884804f80a1050381e https://www.encodeproject.org/files/ENCFF816GRJ/@@download/ENCFF816GRJ.bed.gz hg19 archived borderline replicate concordance ENCFF204YBE bam unfiltered alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 100 ENCFF473SIW, ENCFF643CGH, ENCFF993SXO 7526537294 ENCODE Processing Pipeline 6701a79e0e4aac5b023aec5608432f28 https://www.encodeproject.org/files/ENCFF204YBE/@@download/ENCFF204YBE.bam GRCh38 released borderline replicate concordance ENCFF956QNM bam unfiltered alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 100 ENCFF501XST, ENCFF563CUE, ENCFF643CGH 8932672111 ENCODE Processing Pipeline 6cc625933d97b77ad55d47c1f36b5185 https://www.encodeproject.org/files/ENCFF956QNM/@@download/ENCFF956QNM.bam GRCh38 released borderline replicate concordance ENCFF675XCZ bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 100 ENCFF473SIW, ENCFF643CGH, ENCFF993SXO 6233751083 ENCODE Processing Pipeline 3ee40534d082ebff1a12d72f612e5c59 https://www.encodeproject.org/files/ENCFF675XCZ/@@download/ENCFF675XCZ.bam GRCh38 released borderline replicate concordance ENCFF768SUF bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 100 ENCFF501XST, ENCFF563CUE, ENCFF643CGH 7364401453 ENCODE Processing Pipeline 871d0b767773ab387a922be1d758c3fe https://www.encodeproject.org/files/ENCFF768SUF/@@download/ENCFF768SUF.bam GRCh38 released borderline replicate concordance ENCFF247JBV bigWig signal p-value ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF190EPQ, ENCFF768SUF, ENCFF950AXC 1591245809 ENCODE Processing Pipeline 38bfdc3bb041ada492d802b3c405bb73 https://www.encodeproject.org/files/ENCFF247JBV/@@download/ENCFF247JBV.bigWig GRCh38 released borderline replicate concordance ENCFF099POK bigWig signal p-value ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF190EPQ, ENCFF675XCZ 1416978624 ENCODE Processing Pipeline e6c03c454def1c71a4afc101790e9a29 https://www.encodeproject.org/files/ENCFF099POK/@@download/ENCFF099POK.bigWig GRCh38 released borderline replicate concordance ENCFF095QSB bigWig signal p-value ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF190EPQ, ENCFF675XCZ, ENCFF768SUF, ENCFF950AXC 2392780972 ENCODE Processing Pipeline 004bea783f0b5cf28de05dfe2cd1a3d5 https://www.encodeproject.org/files/ENCFF095QSB/@@download/ENCFF095QSB.bigWig GRCh38 released borderline replicate concordance ENCFF889LNJ bigWig fold change over control ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF190EPQ, ENCFF768SUF, ENCFF950AXC 1896788709 ENCODE Processing Pipeline 9bc24a459eb827647ceab7b6ba986189 https://www.encodeproject.org/files/ENCFF889LNJ/@@download/ENCFF889LNJ.bigWig GRCh38 released borderline replicate concordance ENCFF949VZE bigWig fold change over control ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF190EPQ, ENCFF675XCZ 1439402974 ENCODE Processing Pipeline 9f109daab1513f4285520971e4913f95 https://www.encodeproject.org/files/ENCFF949VZE/@@download/ENCFF949VZE.bigWig GRCh38 released borderline replicate concordance ENCFF838RFR bigWig fold change over control ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF190EPQ, ENCFF675XCZ, ENCFF768SUF, ENCFF950AXC 2435711633 ENCODE Processing Pipeline 636973b176c4759e842b34529b6026f0 https://www.encodeproject.org/files/ENCFF838RFR/@@download/ENCFF838RFR.bigWig GRCh38 released borderline replicate concordance ENCFF062KSJ bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF190EPQ, ENCFF768SUF, ENCFF950AXC 665632 ENCODE Processing Pipeline 9d8feb990c33e0e5e3a563d961a4e685 https://www.encodeproject.org/files/ENCFF062KSJ/@@download/ENCFF062KSJ.bed.gz GRCh38 released borderline replicate concordance ENCFF042ATY bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF190EPQ, ENCFF675XCZ 2563812 ENCODE Processing Pipeline 97478bf98b241f27594a767f9424e52f https://www.encodeproject.org/files/ENCFF042ATY/@@download/ENCFF042ATY.bed.gz GRCh38 released borderline replicate concordance ENCFF195GYQ bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF190EPQ, ENCFF675XCZ, ENCFF768SUF, ENCFF950AXC 821622 ENCODE Processing Pipeline b096fe4c86f033c6638409970cc6bd86 https://www.encodeproject.org/files/ENCFF195GYQ/@@download/ENCFF195GYQ.bed.gz GRCh38 released borderline replicate concordance ENCFF324MQV bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF062KSJ 1353268 ENCODE Processing Pipeline 73df8c800c2857f993af79b3308b6bf4 https://www.encodeproject.org/files/ENCFF324MQV/@@download/ENCFF324MQV.bigBed GRCh38 released borderline replicate concordance ENCFF221CUF bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF042ATY 4688651 ENCODE Processing Pipeline d103a4b4d7ea9342f2b0f43559d6e131 https://www.encodeproject.org/files/ENCFF221CUF/@@download/ENCFF221CUF.bigBed GRCh38 released borderline replicate concordance ENCFF319BIY bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF195GYQ 1599494 ENCODE Processing Pipeline c4886571327091a292cc6287ea9e322f https://www.encodeproject.org/files/ENCFF319BIY/@@download/ENCFF319BIY.bigBed GRCh38 released borderline replicate concordance ENCFF720LAE bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF190EPQ, ENCFF675XCZ, ENCFF768SUF, ENCFF950AXC 7289820 ENCODE Processing Pipeline 19c12053b7e91980d3bc598ad6507867 https://www.encodeproject.org/files/ENCFF720LAE/@@download/ENCFF720LAE.bed.gz GRCh38 released borderline replicate concordance ENCFF092KIY bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF190EPQ, ENCFF675XCZ 6443728 ENCODE Processing Pipeline 4c53a7be94615c65dd176d8891a830ef https://www.encodeproject.org/files/ENCFF092KIY/@@download/ENCFF092KIY.bed.gz GRCh38 released borderline replicate concordance ENCFF892VEY bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF097CRY 11307876 ENCODE Processing Pipeline 4bc9de5ecca290ab0bd23be682af6cef https://www.encodeproject.org/files/ENCFF892VEY/@@download/ENCFF892VEY.bigBed GRCh38 released borderline replicate concordance ENCFF097CRY bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF190EPQ, ENCFF768SUF, ENCFF950AXC 6763742 ENCODE Processing Pipeline 838a3f707b443bb8de044fb3ebc63b76 https://www.encodeproject.org/files/ENCFF097CRY/@@download/ENCFF097CRY.bed.gz GRCh38 released borderline replicate concordance ENCFF352QTP bigBed narrowPeak conservative idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF867XUT 112674 ENCODE Processing Pipeline 53d65cf69e02f67eb6bb993274fc4474 https://www.encodeproject.org/files/ENCFF352QTP/@@download/ENCFF352QTP.bigBed GRCh38 released borderline replicate concordance ENCFF516UWH bed narrowPeak optimal idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF092KIY, ENCFF097CRY, ENCFF419RSJ, ENCFF720LAE 54357 ENCODE Processing Pipeline 462a13743728b0d5db268b9f125351ed https://www.encodeproject.org/files/ENCFF516UWH/@@download/ENCFF516UWH.bed.gz GRCh38 released borderline replicate concordance ENCFF639BMJ bigBed narrowPeak optimal idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF516UWH 160261 ENCODE Processing Pipeline 8c8994f2840abc371d875408f340a069 https://www.encodeproject.org/files/ENCFF639BMJ/@@download/ENCFF639BMJ.bigBed GRCh38 released borderline replicate concordance ENCFF739CGO bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF092KIY 11423035 ENCODE Processing Pipeline 30df085aac9fae93f7017c36a81f6eaf https://www.encodeproject.org/files/ENCFF739CGO/@@download/ENCFF739CGO.bigBed GRCh38 released borderline replicate concordance ENCFF213MYC bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF720LAE 11347904 ENCODE Processing Pipeline d7477cef1a6d8eca3516e7c9ed3beb5f https://www.encodeproject.org/files/ENCFF213MYC/@@download/ENCFF213MYC.bigBed GRCh38 released borderline replicate concordance ENCFF867XUT bed narrowPeak conservative idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF092KIY, ENCFF097CRY, ENCFF419RSJ, ENCFF720LAE 27619 ENCODE Processing Pipeline 4612f17b7fd996d920e074eee8eb43b8 https://www.encodeproject.org/files/ENCFF867XUT/@@download/ENCFF867XUT.bed.gz GRCh38 released borderline replicate concordance ENCFF117ZRT bed narrowPeak conservative idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF001TDO, ENCFF084RKF, ENCFF860QPW, ENCFF904SKF 22674 ENCODE Processing Pipeline f843ecec46090d2a32ca5fbcd66fc236 https://www.encodeproject.org/files/ENCFF117ZRT/@@download/ENCFF117ZRT.bed.gz hg19 released borderline replicate concordance ENCFF860QPW bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF407PCP, ENCFF449NNE, ENCFF999EQI 6748538 ENCODE Processing Pipeline 9d42f59a20b4d38ee400b685f422f1fb https://www.encodeproject.org/files/ENCFF860QPW/@@download/ENCFF860QPW.bed.gz hg19 released borderline replicate concordance ENCFF084RKF bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF449NNE, ENCFF531OJP 6422461 ENCODE Processing Pipeline 233c596f6a500c5c3cf4f7e1ca4975b7 https://www.encodeproject.org/files/ENCFF084RKF/@@download/ENCFF084RKF.bed.gz hg19 released borderline replicate concordance ENCFF904SKF bed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF407PCP, ENCFF449NNE, ENCFF531OJP, ENCFF999EQI 7278056 ENCODE Processing Pipeline 883791ef2f5f0f758cddaeb8cca7393f https://www.encodeproject.org/files/ENCFF904SKF/@@download/ENCFF904SKF.bed.gz hg19 released borderline replicate concordance ENCFF710CPA bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 ENCFF860QPW 11306627 ENCODE Processing Pipeline ddc2c3da03e1784677dccda9f717c63d https://www.encodeproject.org/files/ENCFF710CPA/@@download/ENCFF710CPA.bigBed hg19 released borderline replicate concordance ENCFF296QFB bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 ENCFF084RKF 11391849 ENCODE Processing Pipeline 8a5194fc9ec6136a4c04aa73c9ce0ee3 https://www.encodeproject.org/files/ENCFF296QFB/@@download/ENCFF296QFB.bigBed hg19 released borderline replicate concordance ENCFF075PDC bed narrowPeak optimal idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF001TDO, ENCFF084RKF, ENCFF860QPW, ENCFF904SKF 48337 ENCODE Processing Pipeline abda608c14d5e0e618df18420c4dc60b https://www.encodeproject.org/files/ENCFF075PDC/@@download/ENCFF075PDC.bed.gz hg19 released borderline replicate concordance ENCFF202QLJ bigBed narrowPeak peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF904SKF 11324132 ENCODE Processing Pipeline 611d3d46f9d9c0a92775060e849956a4 https://www.encodeproject.org/files/ENCFF202QLJ/@@download/ENCFF202QLJ.bigBed hg19 released borderline replicate concordance ENCFF533SQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF117ZRT 87275 ENCODE Processing Pipeline 7458b2c7fdbe525824bbf3b3544f3f79 https://www.encodeproject.org/files/ENCFF533SQZ/@@download/ENCFF533SQZ.bigBed hg19 released borderline replicate concordance ENCFF303OAV bigBed narrowPeak optimal idr thresholded peaks ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3, 4 ENCFF075PDC 147170 ENCODE Processing Pipeline e1cc5e1923a08fd34665a8e511ed3333 https://www.encodeproject.org/files/ENCFF303OAV/@@download/ENCFF303OAV.bigBed hg19 released borderline replicate concordance ENCFF137XSL fastq reads ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1532380362 Bradley Bernstein, Broad d5dfee211ff0e5a0ff579ddf6529a763 SRA:SRR5833145 https://www.encodeproject.org/files/ENCFF137XSL/@@download/ENCFF137XSL.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF240SSO fastq reads ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 5628324881 Bradley Bernstein, Broad 46ec31f74b780c2c438536120d61be73 SRA:SRR5833146 https://www.encodeproject.org/files/ENCFF240SSO/@@download/ENCFF240SSO.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF817LMJ bam unfiltered alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF137XSL, ENCFF643CGH 1674612629 ENCODE Processing Pipeline 4577703f4222e469edbd0929f6c6e8ea https://www.encodeproject.org/files/ENCFF817LMJ/@@download/ENCFF817LMJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF364NWO bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 76 ENCFF137XSL, ENCFF643CGH 1157142826 ENCODE Processing Pipeline 21cdc2dae52f1bec7d5c227e1d4c7d46 https://www.encodeproject.org/files/ENCFF364NWO/@@download/ENCFF364NWO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF808ADX bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 76 ENCFF240SSO, ENCFF643CGH 4114422287 ENCODE Processing Pipeline 671d5b0dfdd0081e4ba7e35485443f0a https://www.encodeproject.org/files/ENCFF808ADX/@@download/ENCFF808ADX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF559SXA bam unfiltered alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF240SSO, ENCFF643CGH 5937071663 ENCODE Processing Pipeline d27c73d2f2fd88bd217540f463f44ee9 https://www.encodeproject.org/files/ENCFF559SXA/@@download/ENCFF559SXA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF133NKN bam unfiltered alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 76 ENCFF137XSL, ENCFF807MUK 1670572856 ENCODE Processing Pipeline c4b5c2f2cf8b1768ae3ac9a2e15ce9e8 https://www.encodeproject.org/files/ENCFF133NKN/@@download/ENCFF133NKN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF779HOG bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 76 ENCFF137XSL, ENCFF807MUK 1156158119 ENCODE Processing Pipeline e04f1a8e938fbec6e3d5d97820b96b8f https://www.encodeproject.org/files/ENCFF779HOG/@@download/ENCFF779HOG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF112AKA bam unfiltered alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 76 ENCFF240SSO, ENCFF807MUK 5927854801 ENCODE Processing Pipeline e35d71bc20d9aa9489aa0e096e8ad26c https://www.encodeproject.org/files/ENCFF112AKA/@@download/ENCFF112AKA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF357QDN bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 76 ENCFF240SSO, ENCFF807MUK 4109266070 ENCODE Processing Pipeline 03fbccc5a59aeb3bba5420d5e635c559 https://www.encodeproject.org/files/ENCFF357QDN/@@download/ENCFF357QDN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF585RGO bigWig fold change over control ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF364NWO, ENCFF572IKT, ENCFF714AMB 909374559 ENCODE Processing Pipeline 63a90cc8a86d4ff3118951d46be1852c https://www.encodeproject.org/files/ENCFF585RGO/@@download/ENCFF585RGO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF746VTR bigWig fold change over control ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF808ADX 1648512373 ENCODE Processing Pipeline 3f72f6a781a08efa8f4b2c61a228a2d9 https://www.encodeproject.org/files/ENCFF746VTR/@@download/ENCFF746VTR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF850EMZ bigWig signal p-value ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF364NWO, ENCFF572IKT, ENCFF714AMB 1040134864 ENCODE Processing Pipeline 64688df12a5fad8ec2234fa5839dcd94 https://www.encodeproject.org/files/ENCFF850EMZ/@@download/ENCFF850EMZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF313FAU bigWig signal p-value ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF808ADX 1280509357 ENCODE Processing Pipeline e0cfdca451f12ff9ab8f7e6e4cc39858 https://www.encodeproject.org/files/ENCFF313FAU/@@download/ENCFF313FAU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF658IVL bigWig signal p-value ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364NWO, ENCFF572IKT, ENCFF714AMB, ENCFF808ADX 1857102489 ENCODE Processing Pipeline 567b88ed5965c1bcf3470488219244d3 https://www.encodeproject.org/files/ENCFF658IVL/@@download/ENCFF658IVL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF373VDA bigWig fold change over control ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364NWO, ENCFF572IKT, ENCFF714AMB, ENCFF808ADX 1821772247 ENCODE Processing Pipeline 99148f661c58c67b831ed035f84304db https://www.encodeproject.org/files/ENCFF373VDA/@@download/ENCFF373VDA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF804EKT bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF364NWO, ENCFF572IKT, ENCFF714AMB 6119671 ENCODE Processing Pipeline 836bd115adc20eb4b397492b9f68b21d https://www.encodeproject.org/files/ENCFF804EKT/@@download/ENCFF804EKT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF458FNC bed narrowPeak conservative idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF075UJB, ENCFF419RSJ, ENCFF804EKT, ENCFF946LWW 161584 ENCODE Processing Pipeline ef890bab95b6d105c8942f3e7554c7e0 https://www.encodeproject.org/files/ENCFF458FNC/@@download/ENCFF458FNC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF075UJB bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF808ADX 7085136 ENCODE Processing Pipeline 7047a169086d8b6cb167120afafd6f79 https://www.encodeproject.org/files/ENCFF075UJB/@@download/ENCFF075UJB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF946LWW bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF364NWO, ENCFF572IKT, ENCFF714AMB, ENCFF808ADX 7188798 ENCODE Processing Pipeline 2661a98e2437b24535dc2e66da8d5d30 https://www.encodeproject.org/files/ENCFF946LWW/@@download/ENCFF946LWW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF651CJM bigBed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF804EKT 13532026 ENCODE Processing Pipeline 1dab01a5b50f43a59fc591f4dac41b12 https://www.encodeproject.org/files/ENCFF651CJM/@@download/ENCFF651CJM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF922XZX bigBed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF075UJB 13279866 ENCODE Processing Pipeline f302c955b39bc757d9dcefc566a2ad2c https://www.encodeproject.org/files/ENCFF922XZX/@@download/ENCFF922XZX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF656IKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF458FNC 414295 ENCODE Processing Pipeline 68c79aa4c1b21810bc6467e449c4a9e9 https://www.encodeproject.org/files/ENCFF656IKJ/@@download/ENCFF656IKJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF338YVO bigBed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF946LWW 13311116 ENCODE Processing Pipeline 0ebaa10e19ae2e505d84e0f71219aabd https://www.encodeproject.org/files/ENCFF338YVO/@@download/ENCFF338YVO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF706DRE bed narrowPeak optimal idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF075UJB, ENCFF419RSJ, ENCFF804EKT, ENCFF946LWW 176749 ENCODE Processing Pipeline ba2fe1cea5c988ebf685ec5d863f669a https://www.encodeproject.org/files/ENCFF706DRE/@@download/ENCFF706DRE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF255XHQ bigBed narrowPeak optimal idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF706DRE 368675 ENCODE Processing Pipeline d04b1e2df4b2edfc917523e35fd682cf https://www.encodeproject.org/files/ENCFF255XHQ/@@download/ENCFF255XHQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF351WDN bigWig fold change over control ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 908317925 ENCODE Processing Pipeline ffaeafd3247339f5709363b48b3913d6 https://www.encodeproject.org/files/ENCFF351WDN/@@download/ENCFF351WDN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767OVA bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 6195623 ENCODE Processing Pipeline 68cf868c705e7cd7226f5b2bdda1b0a4 https://www.encodeproject.org/files/ENCFF767OVA/@@download/ENCFF767OVA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF822UGW bigWig signal p-value ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 1132530751 ENCODE Processing Pipeline 89f6c2186a939c5df779d703ec8efd4c https://www.encodeproject.org/files/ENCFF822UGW/@@download/ENCFF822UGW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF858TUG bigWig fold change over control ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF357QDN, ENCFF801GGG, ENCFF881DVS 1632737196 ENCODE Processing Pipeline 4f91e8caf9e1de7e146f0c124528736e https://www.encodeproject.org/files/ENCFF858TUG/@@download/ENCFF858TUG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF338NWI bigWig fold change over control ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF357QDN, ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 1857731829 ENCODE Processing Pipeline efab64376f7fe2c3f3a03fda42f732f2 https://www.encodeproject.org/files/ENCFF338NWI/@@download/ENCFF338NWI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF472JGJ bigWig signal p-value ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF357QDN, ENCFF801GGG, ENCFF881DVS 1357695065 ENCODE Processing Pipeline db77caf60fbdd4ba167a688c5e96ac36 https://www.encodeproject.org/files/ENCFF472JGJ/@@download/ENCFF472JGJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF328OMA bigWig signal p-value ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF357QDN, ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 1450454064 ENCODE Processing Pipeline 9d3d8730334cff60ccef0e6e11753597 https://www.encodeproject.org/files/ENCFF328OMA/@@download/ENCFF328OMA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF819QEC bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF357QDN, ENCFF801GGG, ENCFF881DVS 7097612 ENCODE Processing Pipeline 1164c16e05b649e5ba784c2f15a18189 https://www.encodeproject.org/files/ENCFF819QEC/@@download/ENCFF819QEC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF604FDE bigBed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF767OVA 13522371 ENCODE Processing Pipeline 52e852a78ae152f625525176c6b1d948 https://www.encodeproject.org/files/ENCFF604FDE/@@download/ENCFF604FDE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF571WQV bigBed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF430GOT 13312531 ENCODE Processing Pipeline 1d0e808bf514c098c654ffa4e13eb320 https://www.encodeproject.org/files/ENCFF571WQV/@@download/ENCFF571WQV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF430GOT bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF357QDN, ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 7196759 ENCODE Processing Pipeline 523b6a61c73973b91548b0efa504cdcd https://www.encodeproject.org/files/ENCFF430GOT/@@download/ENCFF430GOT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF809TZT bigBed narrowPeak conservative idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF517QVD 415793 ENCODE Processing Pipeline 923b7bd38f2c1524db1ce66c0ddbbd2f https://www.encodeproject.org/files/ENCFF809TZT/@@download/ENCFF809TZT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF188XRD bed narrowPeak optimal idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF430GOT, ENCFF767OVA, ENCFF819QEC 183739 ENCODE Processing Pipeline 628ccc989464e3745af21f78c7c0831b https://www.encodeproject.org/files/ENCFF188XRD/@@download/ENCFF188XRD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF436ONY bigBed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF819QEC 13276799 ENCODE Processing Pipeline be04c796db8a8c3ee9182fbec2f6a354 https://www.encodeproject.org/files/ENCFF436ONY/@@download/ENCFF436ONY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF517QVD bed narrowPeak conservative idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF430GOT, ENCFF767OVA, ENCFF819QEC 163267 ENCODE Processing Pipeline 8ba24963441eed6512b42381f7c27f76 https://www.encodeproject.org/files/ENCFF517QVD/@@download/ENCFF517QVD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF331MRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF188XRD 460694 ENCODE Processing Pipeline d925cdeeedb682b74c1e45721995286b https://www.encodeproject.org/files/ENCFF331MRQ/@@download/ENCFF331MRQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF710WZA fastq reads ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF174BEA 2751309007 Michael Snyder, Stanford 7d5548b2dbaf8ef139b9aae8677d1a0a SRA:SRR6213995 https://www.encodeproject.org/files/ENCFF710WZA/@@download/ENCFF710WZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF695ICE fastq reads ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF962THE 2757134524 Michael Snyder, Stanford 4007bac909f39a1874936aa80ca7cb69 SRA:SRR6213994 https://www.encodeproject.org/files/ENCFF695ICE/@@download/ENCFF695ICE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF174BEA fastq reads ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF710WZA 2802399154 Michael Snyder, Stanford a68604f1a75eb45646f6faf63a867927 SRA:SRR6213995 https://www.encodeproject.org/files/ENCFF174BEA/@@download/ENCFF174BEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF962THE fastq reads ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF695ICE 2699191291 Michael Snyder, Stanford 00877e5c116a8ccbd0b109992ac82a70 SRA:SRR6213994 https://www.encodeproject.org/files/ENCFF962THE/@@download/ENCFF962THE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF261NWL bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF695ICE, ENCFF807MUK, ENCFF962THE 4839799875 ENCODE Processing Pipeline 552e6e4844fcae1cf4965a57c92a8213 https://www.encodeproject.org/files/ENCFF261NWL/@@download/ENCFF261NWL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF250NLL bam unfiltered alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF695ICE, ENCFF807MUK, ENCFF962THE 5582946610 ENCODE Processing Pipeline b44b268451501f1549bbaa939b86cd15 https://www.encodeproject.org/files/ENCFF250NLL/@@download/ENCFF250NLL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF116DPJ bam unfiltered alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF695ICE, ENCFF962THE 5591292438 ENCODE Processing Pipeline e5b82a231a751649e4e62670ee9803c7 https://www.encodeproject.org/files/ENCFF116DPJ/@@download/ENCFF116DPJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF264FVO bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF695ICE, ENCFF962THE 4842801995 ENCODE Processing Pipeline fd11c96fccefa2a2735c7b07daaf04b8 https://www.encodeproject.org/files/ENCFF264FVO/@@download/ENCFF264FVO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF440CXM bam unfiltered alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF174BEA, ENCFF710WZA, ENCFF807MUK 5673398958 ENCODE Processing Pipeline 025e954b71d417c6d0244f0943d0d06c https://www.encodeproject.org/files/ENCFF440CXM/@@download/ENCFF440CXM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF435APT bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF174BEA, ENCFF643CGH, ENCFF710WZA 4911754313 ENCODE Processing Pipeline d003a4e8a0716aa39de90c4e624da4f4 https://www.encodeproject.org/files/ENCFF435APT/@@download/ENCFF435APT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF478KXP bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF174BEA, ENCFF710WZA, ENCFF807MUK 4908488036 ENCODE Processing Pipeline 148e555051607beb0e377eedaf9e5516 https://www.encodeproject.org/files/ENCFF478KXP/@@download/ENCFF478KXP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF320UUL bam unfiltered alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF174BEA, ENCFF643CGH, ENCFF710WZA 5681755163 ENCODE Processing Pipeline fdcff4b549f45fe40b9537663cbc87b3 https://www.encodeproject.org/files/ENCFF320UUL/@@download/ENCFF320UUL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF513CBP bigWig signal p-value ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478KXP 1323900551 ENCODE Processing Pipeline 621929c0161aa267cde19facde877b91 https://www.encodeproject.org/files/ENCFF513CBP/@@download/ENCFF513CBP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF978VGE bigWig signal p-value ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF261NWL 1204484512 ENCODE Processing Pipeline 3712bc69a77cc4b5376366c93cb14c45 https://www.encodeproject.org/files/ENCFF978VGE/@@download/ENCFF978VGE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF674SNC bigWig signal p-value ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF261NWL, ENCFF478KXP 1969898023 ENCODE Processing Pipeline 0a7bedceb182ddfef41ad5ca579dff55 https://www.encodeproject.org/files/ENCFF674SNC/@@download/ENCFF674SNC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF833AZM bigWig fold change over control ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478KXP 1412030326 ENCODE Processing Pipeline 164e6e2dad0d40147ff57884bd6c1da1 https://www.encodeproject.org/files/ENCFF833AZM/@@download/ENCFF833AZM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF055YAR bigWig fold change over control ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF261NWL 1440365076 ENCODE Processing Pipeline b9fbe211e7d47734b0dccf0e4292c142 https://www.encodeproject.org/files/ENCFF055YAR/@@download/ENCFF055YAR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF769TNU bigWig fold change over control ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF261NWL, ENCFF478KXP 1975946231 ENCODE Processing Pipeline 8f0cb36af6d3d17d007741fc2917e71d https://www.encodeproject.org/files/ENCFF769TNU/@@download/ENCFF769TNU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF238LEE bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF261NWL 6558752 ENCODE Processing Pipeline f34ba1e98f0ed0de5178dc137b485a83 https://www.encodeproject.org/files/ENCFF238LEE/@@download/ENCFF238LEE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF855TGY bigBed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF238LEE 11284564 ENCODE Processing Pipeline 9b2fe7b115080300b1bbfcd91a84b40f https://www.encodeproject.org/files/ENCFF855TGY/@@download/ENCFF855TGY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF832PXR bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478KXP 6492614 ENCODE Processing Pipeline ae992aab9768951c23f05b45c9d6b074 https://www.encodeproject.org/files/ENCFF832PXR/@@download/ENCFF832PXR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF378VNT bigBed narrowPeak optimal idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF163MWF 210612 ENCODE Processing Pipeline fd86534ceba07bb3173fc84b09309dc0 https://www.encodeproject.org/files/ENCFF378VNT/@@download/ENCFF378VNT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF854ZRK bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF261NWL, ENCFF478KXP 7181786 ENCODE Processing Pipeline e040ddadfe0605eada2a4adf0f36e4ab https://www.encodeproject.org/files/ENCFF854ZRK/@@download/ENCFF854ZRK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF149FCN bigBed narrowPeak conservative idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF555SDJ 170732 ENCODE Processing Pipeline bb1d3ecb7ba2c1a072e1a170dff9bd2e https://www.encodeproject.org/files/ENCFF149FCN/@@download/ENCFF149FCN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF163MWF bed narrowPeak optimal idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF238LEE, ENCFF832PXR, ENCFF854ZRK 84445 ENCODE Processing Pipeline 8fc6ea81f29eab08af87c1466d6aa09e https://www.encodeproject.org/files/ENCFF163MWF/@@download/ENCFF163MWF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF073CME bigBed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF832PXR 11329018 ENCODE Processing Pipeline 6578ac4e0e295cf29ea5652f0453e834 https://www.encodeproject.org/files/ENCFF073CME/@@download/ENCFF073CME.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF297ATX bigBed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF854ZRK 11165913 ENCODE Processing Pipeline 0b37386421d62607513a054e17a5d44f https://www.encodeproject.org/files/ENCFF297ATX/@@download/ENCFF297ATX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF555SDJ bed narrowPeak conservative idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF238LEE, ENCFF832PXR, ENCFF854ZRK 60092 ENCODE Processing Pipeline 2b3634ca66ff7ad249582fa0c0f75460 https://www.encodeproject.org/files/ENCFF555SDJ/@@download/ENCFF555SDJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF334JHZ bigWig signal p-value ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF435APT 1284354070 ENCODE Processing Pipeline 06eb1ac98d3aa95cc0285968ce807e12 https://www.encodeproject.org/files/ENCFF334JHZ/@@download/ENCFF334JHZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF400VWF bigWig signal p-value ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF264FVO 1435241793 ENCODE Processing Pipeline cf7f7912a99d2413cdd6b9db76e39ffc https://www.encodeproject.org/files/ENCFF400VWF/@@download/ENCFF400VWF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF703YVX bigWig signal p-value ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF264FVO, ENCFF435APT 1981363206 ENCODE Processing Pipeline 4e6a17791c6dea0fdd9510176e3a782b https://www.encodeproject.org/files/ENCFF703YVX/@@download/ENCFF703YVX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF436JJM bigWig fold change over control ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF435APT 1411823473 ENCODE Processing Pipeline f5c60725e25d239a523f55a16d978b22 https://www.encodeproject.org/files/ENCFF436JJM/@@download/ENCFF436JJM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF788HNT bigWig fold change over control ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF264FVO 1438328064 ENCODE Processing Pipeline 1234adbaa6c5822813ded43377d5deea https://www.encodeproject.org/files/ENCFF788HNT/@@download/ENCFF788HNT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF163RZC bigWig fold change over control ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF264FVO, ENCFF435APT 1980362001 ENCODE Processing Pipeline c4caf26af5986e16a22bd45684073286 https://www.encodeproject.org/files/ENCFF163RZC/@@download/ENCFF163RZC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF476GVZ bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF264FVO 6560110 ENCODE Processing Pipeline 37dc3fc9ee11b100d68a452685ffd711 https://www.encodeproject.org/files/ENCFF476GVZ/@@download/ENCFF476GVZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF731VOO bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF435APT 6487828 ENCODE Processing Pipeline 364701abbb5223af1b4770e3abdb0c07 https://www.encodeproject.org/files/ENCFF731VOO/@@download/ENCFF731VOO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF622LXB bigBed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF731VOO 11342240 ENCODE Processing Pipeline 86ef877619c6accafcdfb768512030b8 https://www.encodeproject.org/files/ENCFF622LXB/@@download/ENCFF622LXB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF437BDR bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF264FVO, ENCFF435APT 7185361 ENCODE Processing Pipeline b669866d3fd618a23ae1ca0efcfb8222 https://www.encodeproject.org/files/ENCFF437BDR/@@download/ENCFF437BDR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF871HWW bigBed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF437BDR 11177103 ENCODE Processing Pipeline 7a5b79b84f987f3dd3322d9254b2a9a0 https://www.encodeproject.org/files/ENCFF871HWW/@@download/ENCFF871HWW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF509YKU bed narrowPeak optimal idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF437BDR, ENCFF476GVZ, ENCFF731VOO 84540 ENCODE Processing Pipeline a6b96bd51b2f9d0fe383be0991a23890 https://www.encodeproject.org/files/ENCFF509YKU/@@download/ENCFF509YKU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF503XKZ bigBed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF476GVZ 11294381 ENCODE Processing Pipeline aa9429e99e0c2e86533ecdcef9ac856f https://www.encodeproject.org/files/ENCFF503XKZ/@@download/ENCFF503XKZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF883PGC bigBed narrowPeak conservative idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF327NWI 173609 ENCODE Processing Pipeline 265a56542f6a9c3d9fe19ea93c214b8a https://www.encodeproject.org/files/ENCFF883PGC/@@download/ENCFF883PGC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF334GZG bigBed narrowPeak optimal idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF509YKU 211347 ENCODE Processing Pipeline 04e46d57d17eb1629e2f4ba437ac7d55 https://www.encodeproject.org/files/ENCFF334GZG/@@download/ENCFF334GZG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF327NWI bed narrowPeak conservative idr thresholded peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF437BDR, ENCFF476GVZ, ENCFF731VOO 61448 ENCODE Processing Pipeline f76f8e5e2451ad6097455a3390cd87e2 https://www.encodeproject.org/files/ENCFF327NWI/@@download/ENCFF327NWI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF174QED bam unfiltered alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF967ZPY 1144532238 ENCODE Processing Pipeline 2b158fd0bf9cf14c16e98c289dd017d4 https://www.encodeproject.org/files/ENCFF174QED/@@download/ENCFF174QED.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF290YUQ bam unfiltered alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF395VGH, ENCFF807MUK 1114700198 ENCODE Processing Pipeline c8c762c98a9fc3d1fc2c7c1d84abbaca https://www.encodeproject.org/files/ENCFF290YUQ/@@download/ENCFF290YUQ.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF395VGH fastq reads ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 975913234 Richard Myers, HAIB c571b0c1e60ce7628155c8f39757a653 SRA:SRR5339403 https://www.encodeproject.org/files/ENCFF395VGH/@@download/ENCFF395VGH.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF967ZPY fastq reads ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 999426684 Richard Myers, HAIB d1bb759ebecb3ba19d50b7b424fee270 SRA:SRR5339404 https://www.encodeproject.org/files/ENCFF967ZPY/@@download/ENCFF967ZPY.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF393RUJ bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF395VGH, ENCFF807MUK 864622523 ENCODE Processing Pipeline 92bf620f4587a56ef9bd2e00dae9973d https://www.encodeproject.org/files/ENCFF393RUJ/@@download/ENCFF393RUJ.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF085FPP bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF967ZPY 880022900 ENCODE Processing Pipeline b5908fcff7fa702d28cb963132e16d17 https://www.encodeproject.org/files/ENCFF085FPP/@@download/ENCFF085FPP.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF526SLI bigWig fold change over control ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF393RUJ 389126418 ENCODE Processing Pipeline 2721bd9c8e7751ab6e60b46172817af4 https://www.encodeproject.org/files/ENCFF526SLI/@@download/ENCFF526SLI.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF268REH bigWig signal p-value ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF085FPP, ENCFF393RUJ 448640928 ENCODE Processing Pipeline 582c39959181b2ae601f8b25a2ca5901 https://www.encodeproject.org/files/ENCFF268REH/@@download/ENCFF268REH.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF235ZRP bigWig signal p-value ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF085FPP 440347792 ENCODE Processing Pipeline edf8b9fcc650666dd0de40b39ba9511e https://www.encodeproject.org/files/ENCFF235ZRP/@@download/ENCFF235ZRP.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF972ISD bigWig signal p-value ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF393RUJ 405455369 ENCODE Processing Pipeline d2284cdb532dcb6469e63c63a8466420 https://www.encodeproject.org/files/ENCFF972ISD/@@download/ENCFF972ISD.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF620DEV bigBed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF230HGO 10981213 ENCODE Processing Pipeline cc7c58ca1dfc198ad4d567e591c78d77 https://www.encodeproject.org/files/ENCFF620DEV/@@download/ENCFF620DEV.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF803XGI bigBed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF834BOR 13247441 ENCODE Processing Pipeline 2d12595c50b4efd5038bc3671bda16f3 https://www.encodeproject.org/files/ENCFF803XGI/@@download/ENCFF803XGI.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF834BOR bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF393RUJ 5406547 ENCODE Processing Pipeline 295d2864b809ecf79aa410e9a0825b44 https://www.encodeproject.org/files/ENCFF834BOR/@@download/ENCFF834BOR.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF196WAX bigWig fold change over control ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF085FPP 398568236 ENCODE Processing Pipeline 3462dc8ec86f0b72c3429ca53100b433 https://www.encodeproject.org/files/ENCFF196WAX/@@download/ENCFF196WAX.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF364KNO bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF085FPP, ENCFF393RUJ 6190963 ENCODE Processing Pipeline cead607a97332b0825b7f114932060ff https://www.encodeproject.org/files/ENCFF364KNO/@@download/ENCFF364KNO.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF363DJS bigWig fold change over control ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF085FPP, ENCFF393RUJ 672424316 ENCODE Processing Pipeline 1df2512f90204e15e8989b3aa2db369b https://www.encodeproject.org/files/ENCFF363DJS/@@download/ENCFF363DJS.bigWig hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF230HGO bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF085FPP 5142371 ENCODE Processing Pipeline 71ba62913bf26163ca612c6859c38da0 https://www.encodeproject.org/files/ENCFF230HGO/@@download/ENCFF230HGO.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF790ZAE bigBed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF364KNO 13382775 ENCODE Processing Pipeline 2d7f002dc5896cb5a996f3f081fbfc42 https://www.encodeproject.org/files/ENCFF790ZAE/@@download/ENCFF790ZAE.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF866XQJ bam unfiltered alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF967ZPY 1148317691 ENCODE Processing Pipeline 5cfe47d7b547097142ccc0461936470d https://www.encodeproject.org/files/ENCFF866XQJ/@@download/ENCFF866XQJ.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF763CXZ bam unfiltered alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF395VGH, ENCFF643CGH 1118237476 ENCODE Processing Pipeline 6c7965c7dbeb58c9916ef995dab5a8a9 https://www.encodeproject.org/files/ENCFF763CXZ/@@download/ENCFF763CXZ.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF430JGU bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF395VGH, ENCFF643CGH 864613783 ENCODE Processing Pipeline 4e4ec66ef696ce0c15c1bcc676ede440 https://www.encodeproject.org/files/ENCFF430JGU/@@download/ENCFF430JGU.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF347VYQ bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF967ZPY 879995232 ENCODE Processing Pipeline 0b4b519bf12c3ae8a7d9ab90b5900a12 https://www.encodeproject.org/files/ENCFF347VYQ/@@download/ENCFF347VYQ.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF507ZCH bigWig signal p-value ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF347VYQ, ENCFF582CVJ 440332623 ENCODE Processing Pipeline 638e6c6a03a8c0d11258aac8228e2cc2 https://www.encodeproject.org/files/ENCFF507ZCH/@@download/ENCFF507ZCH.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF519WBV bigWig signal p-value ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF430JGU, ENCFF582CVJ 523343776 ENCODE Processing Pipeline 1b5cc458c12246bf59705f13fabd7fb0 https://www.encodeproject.org/files/ENCFF519WBV/@@download/ENCFF519WBV.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF961QEI bigWig signal p-value ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF347VYQ, ENCFF430JGU, ENCFF582CVJ 451623943 ENCODE Processing Pipeline 517e1c3be7281106a19af465b4ab8aca https://www.encodeproject.org/files/ENCFF961QEI/@@download/ENCFF961QEI.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF053JPE bigWig fold change over control ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF347VYQ, ENCFF582CVJ 399088263 ENCODE Processing Pipeline 7e336f4740453d07495c27ec5ccc97af https://www.encodeproject.org/files/ENCFF053JPE/@@download/ENCFF053JPE.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF698GHR bigWig fold change over control ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF430JGU, ENCFF582CVJ 398879223 ENCODE Processing Pipeline 35e470e502bd3201d327e50afae24c42 https://www.encodeproject.org/files/ENCFF698GHR/@@download/ENCFF698GHR.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF969COV bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF430JGU, ENCFF582CVJ 5207293 ENCODE Processing Pipeline d200740a4838e72fc10411397809ca31 https://www.encodeproject.org/files/ENCFF969COV/@@download/ENCFF969COV.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF393EHU bigWig fold change over control ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF347VYQ, ENCFF430JGU, ENCFF582CVJ 677124061 ENCODE Processing Pipeline fae09ac76a85f258c9466e6e28b12f2c https://www.encodeproject.org/files/ENCFF393EHU/@@download/ENCFF393EHU.bigWig GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF536VXH bigBed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF802CVR 10909676 ENCODE Processing Pipeline 7f805681c37bfcb2fe6731b7b09cb14f https://www.encodeproject.org/files/ENCFF536VXH/@@download/ENCFF536VXH.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF891YYT bigBed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF969COV 13165772 ENCODE Processing Pipeline 36ce8109ad5eb4df1541a525aca11b49 https://www.encodeproject.org/files/ENCFF891YYT/@@download/ENCFF891YYT.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF802CVR bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF347VYQ, ENCFF582CVJ 5001112 ENCODE Processing Pipeline 76cbf35439463ae14508fad114f79acd https://www.encodeproject.org/files/ENCFF802CVR/@@download/ENCFF802CVR.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF252UBE bigBed narrowPeak optimal idr thresholded peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF709YWO 281925 ENCODE Processing Pipeline 2bb84837e23ab5798a9653ee1c0e57f5 https://www.encodeproject.org/files/ENCFF252UBE/@@download/ENCFF252UBE.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF461ZTU bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF347VYQ, ENCFF430JGU, ENCFF582CVJ 5949426 ENCODE Processing Pipeline fd6bf29e8071f5be2124767ddaacbbce https://www.encodeproject.org/files/ENCFF461ZTU/@@download/ENCFF461ZTU.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF709YWO bed narrowPeak optimal idr thresholded peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF461ZTU, ENCFF802CVR, ENCFF969COV 115548 ENCODE Processing Pipeline 14d34688c62574886efa3b6d3b1e605c https://www.encodeproject.org/files/ENCFF709YWO/@@download/ENCFF709YWO.bed.gz GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF024TSH bigBed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF461ZTU 13363870 ENCODE Processing Pipeline a195f9fffc6f0603cd43ecd42d6ab3aa https://www.encodeproject.org/files/ENCFF024TSH/@@download/ENCFF024TSH.bigBed GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF357SNU bigBed narrowPeak conservative idr thresholded peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF038ZBJ 206241 ENCODE Processing Pipeline 4ac08990aa15f393ab4fab406031e084 https://www.encodeproject.org/files/ENCFF357SNU/@@download/ENCFF357SNU.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF667PAI bed narrowPeak optimal idr thresholded peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF230HGO, ENCFF364KNO, ENCFF834BOR 103649 ENCODE Processing Pipeline 20d1799d8450373b83edb9309eb79e80 https://www.encodeproject.org/files/ENCFF667PAI/@@download/ENCFF667PAI.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF038ZBJ bed narrowPeak conservative idr thresholded peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF230HGO, ENCFF364KNO, ENCFF834BOR 97138 ENCODE Processing Pipeline e35c55d8a1ba98825a79c5767fb4d473 https://www.encodeproject.org/files/ENCFF038ZBJ/@@download/ENCFF038ZBJ.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF144JLJ bigBed narrowPeak optimal idr thresholded peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF667PAI 214235 ENCODE Processing Pipeline 2f10fbb2d4d8bdfe81517ee66388fff2 https://www.encodeproject.org/files/ENCFF144JLJ/@@download/ENCFF144JLJ.bigBed hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF185DEL fastq reads ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF038XSJ 2276103246 Michael Snyder, Stanford f2e8a52da529437e46888bd3b27f5d2e SRA:SRR5112345 https://www.encodeproject.org/files/ENCFF185DEL/@@download/ENCFF185DEL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF652POL fastq reads ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF725NIO 1983713453 Michael Snyder, Stanford de4e477fca7d7a75ebbfb03f2666da99 SRA:SRR5112344 https://www.encodeproject.org/files/ENCFF652POL/@@download/ENCFF652POL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF038XSJ fastq reads ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF185DEL 2345969998 Michael Snyder, Stanford 9b8f836d3918664ef6ea11fe295f3349 SRA:SRR5112345 https://www.encodeproject.org/files/ENCFF038XSJ/@@download/ENCFF038XSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF725NIO fastq reads ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF652POL 2062392019 Michael Snyder, Stanford 656c68dae657dba86ea1738ba0766603 SRA:SRR5112344 https://www.encodeproject.org/files/ENCFF725NIO/@@download/ENCFF725NIO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF278XZT bam unfiltered alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF652POL, ENCFF725NIO, ENCFF807MUK 4478315560 ENCODE Processing Pipeline d4e0a99aa5992010472a69fecc1431ac https://www.encodeproject.org/files/ENCFF278XZT/@@download/ENCFF278XZT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF622QVJ bam unfiltered alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF038XSJ, ENCFF185DEL, ENCFF807MUK 5114348364 ENCODE Processing Pipeline 73b36058fe758c32e6568ca2d0e43661 https://www.encodeproject.org/files/ENCFF622QVJ/@@download/ENCFF622QVJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF058SQY bam unfiltered alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF038XSJ, ENCFF185DEL, ENCFF643CGH 5120103418 ENCODE Processing Pipeline 43518ddcd7669b428866ef265ef39da1 https://www.encodeproject.org/files/ENCFF058SQY/@@download/ENCFF058SQY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF295IVF bam unfiltered alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF652POL, ENCFF725NIO 4481539507 ENCODE Processing Pipeline 28cfd1fd154033188ea435012c3b056d https://www.encodeproject.org/files/ENCFF295IVF/@@download/ENCFF295IVF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF469URD bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF038XSJ, ENCFF185DEL, ENCFF807MUK 4470779841 ENCODE Processing Pipeline 64f451c9676667d18785ce80d74eb42e https://www.encodeproject.org/files/ENCFF469URD/@@download/ENCFF469URD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF150NDP bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF652POL, ENCFF725NIO, ENCFF807MUK 3730658736 ENCODE Processing Pipeline 2620df45c47706eecac8c685538e4a56 https://www.encodeproject.org/files/ENCFF150NDP/@@download/ENCFF150NDP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF193XUN bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF038XSJ, ENCFF185DEL, ENCFF643CGH 4472134685 ENCODE Processing Pipeline ecdaa422cc0baf6ff258681e73aa3d34 https://www.encodeproject.org/files/ENCFF193XUN/@@download/ENCFF193XUN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF703RJE bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF652POL, ENCFF725NIO 3731549563 ENCODE Processing Pipeline e11245279a386c0d79ad431b31dd05a3 https://www.encodeproject.org/files/ENCFF703RJE/@@download/ENCFF703RJE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF824FFR bigWig signal p-value ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF469URD 1202121149 ENCODE Processing Pipeline fa2551e0a9bbbc2aa91590b5b8db60d8 https://www.encodeproject.org/files/ENCFF824FFR/@@download/ENCFF824FFR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF969QYS bigWig signal p-value ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF150NDP 1321205957 ENCODE Processing Pipeline e2e3bf481fb4049ac8210e7c141c176e https://www.encodeproject.org/files/ENCFF969QYS/@@download/ENCFF969QYS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF015UKW bigWig signal p-value ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF150NDP, ENCFF469URD 1701459108 ENCODE Processing Pipeline 77dc979d068ac44c70c52b3b05f1a268 https://www.encodeproject.org/files/ENCFF015UKW/@@download/ENCFF015UKW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF716YCB bigWig fold change over control ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF469URD 1425675370 ENCODE Processing Pipeline b08ec2dab0da93f5771273957ddf568a https://www.encodeproject.org/files/ENCFF716YCB/@@download/ENCFF716YCB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF236EYG bigWig fold change over control ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF150NDP 1271281170 ENCODE Processing Pipeline 5f156c561f56f8c70dd61ace570e84e1 https://www.encodeproject.org/files/ENCFF236EYG/@@download/ENCFF236EYG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF553TSA bigWig fold change over control ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF150NDP, ENCFF469URD 1891399164 ENCODE Processing Pipeline 370fc1c0f388e9ce59493f317e24b789 https://www.encodeproject.org/files/ENCFF553TSA/@@download/ENCFF553TSA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF581CAJ bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF150NDP 6919299 ENCODE Processing Pipeline cac769629d17c55af5dcb641f96e5ec3 https://www.encodeproject.org/files/ENCFF581CAJ/@@download/ENCFF581CAJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF899PSA bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF469URD 6915760 ENCODE Processing Pipeline 1d2d360bff89a4e1e947d5b6dc93a585 https://www.encodeproject.org/files/ENCFF899PSA/@@download/ENCFF899PSA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF241ROW bigBed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF899PSA 13320204 ENCODE Processing Pipeline aefac838c3ecc608f1b63e2a36591529 https://www.encodeproject.org/files/ENCFF241ROW/@@download/ENCFF241ROW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF722BQJ bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF150NDP, ENCFF469URD 7260444 ENCODE Processing Pipeline 90f95dfd078b243bdb00c7a767c80e1b https://www.encodeproject.org/files/ENCFF722BQJ/@@download/ENCFF722BQJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF136AES bigBed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF581CAJ 13229650 ENCODE Processing Pipeline c6474dd991abc2fa47f2324242d90cbf https://www.encodeproject.org/files/ENCFF136AES/@@download/ENCFF136AES.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF998UPD bed narrowPeak conservative idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF581CAJ, ENCFF722BQJ, ENCFF899PSA 335653 ENCODE Processing Pipeline c709cd01179f304628c8f84678e69b59 https://www.encodeproject.org/files/ENCFF998UPD/@@download/ENCFF998UPD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF226ZAJ bigBed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF722BQJ 13117176 ENCODE Processing Pipeline a7c0f5859e111448e4b774e52eae07a6 https://www.encodeproject.org/files/ENCFF226ZAJ/@@download/ENCFF226ZAJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF042RKH bigBed narrowPeak conservative idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF998UPD 692236 ENCODE Processing Pipeline 5390e06e4d42f2fed288f747ff1c21e9 https://www.encodeproject.org/files/ENCFF042RKH/@@download/ENCFF042RKH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF405RGE bed narrowPeak optimal idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF581CAJ, ENCFF722BQJ, ENCFF899PSA 404688 ENCODE Processing Pipeline 6f19ceea45043e71e9e58aef27978f87 https://www.encodeproject.org/files/ENCFF405RGE/@@download/ENCFF405RGE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF863MJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF405RGE 805382 ENCODE Processing Pipeline b7e30faef34370ebfe10167577347bf2 https://www.encodeproject.org/files/ENCFF863MJQ/@@download/ENCFF863MJQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF719GZQ bigWig signal p-value ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193XUN 1440988695 ENCODE Processing Pipeline 8b8792d0d533ef8725080308d4cf3215 https://www.encodeproject.org/files/ENCFF719GZQ/@@download/ENCFF719GZQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF670NHQ bigWig signal p-value ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF703RJE 1194264245 ENCODE Processing Pipeline 24a71c1f7ba76eb48745f4ac60f08fb0 https://www.encodeproject.org/files/ENCFF670NHQ/@@download/ENCFF670NHQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF458LYV bigWig signal p-value ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193XUN, ENCFF703RJE 1954442932 ENCODE Processing Pipeline 0a9d9dc97a9923db8076404be8011063 https://www.encodeproject.org/files/ENCFF458LYV/@@download/ENCFF458LYV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF351GPD bigWig fold change over control ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193XUN 1436124558 ENCODE Processing Pipeline e7fb094fc596fd5975b3959e0412b5a1 https://www.encodeproject.org/files/ENCFF351GPD/@@download/ENCFF351GPD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF203PWX bigWig fold change over control ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF703RJE 1273839070 ENCODE Processing Pipeline ed39a91ba91d639934363fca272a15d8 https://www.encodeproject.org/files/ENCFF203PWX/@@download/ENCFF203PWX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF047UXI bigWig fold change over control ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193XUN, ENCFF703RJE 1917457672 ENCODE Processing Pipeline 5d763dc1f65506b010438275f1d7c8b8 https://www.encodeproject.org/files/ENCFF047UXI/@@download/ENCFF047UXI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF750IMH bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF193XUN 6840278 ENCODE Processing Pipeline ee55771e3580dc6d6dc15082be221c6e https://www.encodeproject.org/files/ENCFF750IMH/@@download/ENCFF750IMH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF188UVM bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF703RJE 6866535 ENCODE Processing Pipeline 655e8a82cf823ff53b3b7cf28c891c06 https://www.encodeproject.org/files/ENCFF188UVM/@@download/ENCFF188UVM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF460UOU bigBed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750IMH 13339572 ENCODE Processing Pipeline 04b517ef8729795e40e40cd85b0a5600 https://www.encodeproject.org/files/ENCFF460UOU/@@download/ENCFF460UOU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF389EVL bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF193XUN, ENCFF703RJE 7241604 ENCODE Processing Pipeline 4f997a6762ba2f38c0423220364c1fd5 https://www.encodeproject.org/files/ENCFF389EVL/@@download/ENCFF389EVL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF225HBA bigBed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF188UVM 13272143 ENCODE Processing Pipeline b8742ec7e5187ad43076346aef97d792 https://www.encodeproject.org/files/ENCFF225HBA/@@download/ENCFF225HBA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF690OFN bigBed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF389EVL 13137102 ENCODE Processing Pipeline 4e5000afcecde9cea71ba15e0b48c7d3 https://www.encodeproject.org/files/ENCFF690OFN/@@download/ENCFF690OFN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF212GOZ bed narrowPeak conservative idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF188UVM, ENCFF389EVL, ENCFF419RSJ, ENCFF750IMH 336331 ENCODE Processing Pipeline 1308dfc7a513387ace58dba69f0e938f https://www.encodeproject.org/files/ENCFF212GOZ/@@download/ENCFF212GOZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF216ALU bed narrowPeak optimal idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF188UVM, ENCFF389EVL, ENCFF419RSJ, ENCFF750IMH 400863 ENCODE Processing Pipeline 798cde0b745a3861018dd240d6ca172c https://www.encodeproject.org/files/ENCFF216ALU/@@download/ENCFF216ALU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF716AAG bigBed narrowPeak conservative idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF212GOZ 695959 ENCODE Processing Pipeline fadbe8fc82fcb284de35f8d6a352b766 https://www.encodeproject.org/files/ENCFF716AAG/@@download/ENCFF716AAG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF225JRX bigBed narrowPeak optimal idr thresholded peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF216ALU 802135 ENCODE Processing Pipeline e85ed67983625e3309fe5279368070d3 https://www.encodeproject.org/files/ENCFF225JRX/@@download/ENCFF225JRX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF848FCP fastq reads ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1096960718 Richard Myers, HAIB 7886e722d90f8588d411f7c66be945ca https://www.encodeproject.org/files/ENCFF848FCP/@@download/ENCFF848FCP.fastq.gz Illumina HiSeq 2000 /files/ENCFF484RXR/ released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF186UNP fastq reads ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1566418329 Richard Myers, HAIB bbfca3569a2868a9733a4fc5cf825fab https://www.encodeproject.org/files/ENCFF186UNP/@@download/ENCFF186UNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF252PYF/ released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF041GRT bam unfiltered alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF848FCP 1262690369 ENCODE Processing Pipeline 6baed6287c8ecb39df3d647769a6b36b https://www.encodeproject.org/files/ENCFF041GRT/@@download/ENCFF041GRT.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF454HQC bam unfiltered alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 50 ENCFF186UNP, ENCFF643CGH 1749735310 ENCODE Processing Pipeline 1f7df77491b4f96b7b8e2c91ed14a975 https://www.encodeproject.org/files/ENCFF454HQC/@@download/ENCFF454HQC.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF138ZXJ bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF848FCP 1011369519 ENCODE Processing Pipeline b007bb1e2859d0fb82d7cf2e50958434 https://www.encodeproject.org/files/ENCFF138ZXJ/@@download/ENCFF138ZXJ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF452BSY bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 50 ENCFF186UNP, ENCFF643CGH 1389014998 ENCODE Processing Pipeline bb8b0d8438025413693fa9bf4028c96a https://www.encodeproject.org/files/ENCFF452BSY/@@download/ENCFF452BSY.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF987SMW bigWig signal p-value ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF138ZXJ, ENCFF982GQU 654001104 ENCODE Processing Pipeline af3bad56f0e809163e42d816ee83efe8 https://www.encodeproject.org/files/ENCFF987SMW/@@download/ENCFF987SMW.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF065EJM bigWig signal p-value ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF341IVK, ENCFF452BSY, ENCFF982GQU 1041599410 ENCODE Processing Pipeline 870514a762acfc3774328dbed90ffc41 https://www.encodeproject.org/files/ENCFF065EJM/@@download/ENCFF065EJM.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF321CSJ bigWig fold change over control ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF138ZXJ, ENCFF982GQU 447872785 ENCODE Processing Pipeline fcce1da186533b3892917880209b5b29 https://www.encodeproject.org/files/ENCFF321CSJ/@@download/ENCFF321CSJ.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF190RXI bigWig fold change over control ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF341IVK, ENCFF452BSY, ENCFF982GQU 822022950 ENCODE Processing Pipeline e7d6d86eea0deaa6f2d1cfca3ced360d https://www.encodeproject.org/files/ENCFF190RXI/@@download/ENCFF190RXI.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF067WTK bigWig fold change over control ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF138ZXJ, ENCFF341IVK, ENCFF452BSY, ENCFF982GQU 1136698354 ENCODE Processing Pipeline 46e1fa6b694354b068d7d6d6a5e758d3 https://www.encodeproject.org/files/ENCFF067WTK/@@download/ENCFF067WTK.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF776IAW bigWig signal p-value ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF138ZXJ, ENCFF341IVK, ENCFF452BSY, ENCFF982GQU 1092717889 ENCODE Processing Pipeline 9f5c35aba20f722b8a12aea83a73dac2 https://www.encodeproject.org/files/ENCFF776IAW/@@download/ENCFF776IAW.bigWig GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF451EEO bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF138ZXJ, ENCFF982GQU 4635353 ENCODE Processing Pipeline 7a986fe140c1713a139f1223fcb705f4 https://www.encodeproject.org/files/ENCFF451EEO/@@download/ENCFF451EEO.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF620JDU bigBed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF822CEQ 11603130 ENCODE Processing Pipeline 77a5444b8ded3df202878f9805f9c0e3 https://www.encodeproject.org/files/ENCFF620JDU/@@download/ENCFF620JDU.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF897LBK bed narrowPeak conservative idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF451EEO, ENCFF698QYL, ENCFF822CEQ 143226 ENCODE Processing Pipeline d46b844ca7b1e299f7a3f6da99d39de2 https://www.encodeproject.org/files/ENCFF897LBK/@@download/ENCFF897LBK.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF698QYL bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF341IVK, ENCFF452BSY, ENCFF982GQU 5515609 ENCODE Processing Pipeline 34906e96f8420e6530175f075ce10cde https://www.encodeproject.org/files/ENCFF698QYL/@@download/ENCFF698QYL.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF250ABC bigBed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF698QYL 11489402 ENCODE Processing Pipeline ecbf52c270bb58ced982ac3e981207be https://www.encodeproject.org/files/ENCFF250ABC/@@download/ENCFF250ABC.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF822CEQ bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF138ZXJ, ENCFF341IVK, ENCFF452BSY, ENCFF982GQU 6137787 ENCODE Processing Pipeline 96a97da84fd188c49cab939abc1d43ae https://www.encodeproject.org/files/ENCFF822CEQ/@@download/ENCFF822CEQ.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF107BTX bigBed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF451EEO 11136604 ENCODE Processing Pipeline 05fa1e4ae7859b4e1617972b647de056 https://www.encodeproject.org/files/ENCFF107BTX/@@download/ENCFF107BTX.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF105BRT bigBed narrowPeak conservative idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF897LBK 283771 ENCODE Processing Pipeline 17cf66d6b60328414e60acf13caba7d6 https://www.encodeproject.org/files/ENCFF105BRT/@@download/ENCFF105BRT.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF621PFM bed narrowPeak optimal idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF451EEO, ENCFF698QYL, ENCFF822CEQ 192161 ENCODE Processing Pipeline 13ca3d8fded7b0117927206451f6c5de https://www.encodeproject.org/files/ENCFF621PFM/@@download/ENCFF621PFM.bed.gz GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF732WPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF621PFM 348243 ENCODE Processing Pipeline cd5bbe3a598680d46fb4283aa715465a https://www.encodeproject.org/files/ENCFF732WPJ/@@download/ENCFF732WPJ.bigBed GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF964MAZ bam unfiltered alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 50 ENCFF807MUK, ENCFF848FCP 1260593172 ENCODE Processing Pipeline 15c8acd898e5715feffd253a2d4b8fdf https://www.encodeproject.org/files/ENCFF964MAZ/@@download/ENCFF964MAZ.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF786QGA bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 50 ENCFF807MUK, ENCFF848FCP 1011446693 ENCODE Processing Pipeline 4cd0ceebdb0b580492e2b103f18803fb https://www.encodeproject.org/files/ENCFF786QGA/@@download/ENCFF786QGA.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF261DNQ bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 50 ENCFF186UNP, ENCFF807MUK 1389118489 ENCODE Processing Pipeline 76bed7723d23a5f8673037f510ffd5bf https://www.encodeproject.org/files/ENCFF261DNQ/@@download/ENCFF261DNQ.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF752VOR bam unfiltered alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 50 ENCFF186UNP, ENCFF807MUK 1746389070 ENCODE Processing Pipeline 4dd2e57870ddd5349c9d96f6e8857c5c https://www.encodeproject.org/files/ENCFF752VOR/@@download/ENCFF752VOR.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF680EJE bigWig signal p-value ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF786QGA 539308559 ENCODE Processing Pipeline 2515b699f4da1984ebb8850419ce057e https://www.encodeproject.org/files/ENCFF680EJE/@@download/ENCFF680EJE.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF406BOF bigWig signal p-value ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF261DNQ, ENCFF786QGA, ENCFF956QBZ 1116570049 ENCODE Processing Pipeline 34762ca795df92b35af3bdc20a15abad https://www.encodeproject.org/files/ENCFF406BOF/@@download/ENCFF406BOF.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF016GXD bigWig fold change over control ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF786QGA 453581485 ENCODE Processing Pipeline cc463a4548a91b79d13a0fa3144700ac https://www.encodeproject.org/files/ENCFF016GXD/@@download/ENCFF016GXD.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF957VSD bigWig fold change over control ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF017YFK, ENCFF261DNQ, ENCFF956QBZ 824282661 ENCODE Processing Pipeline 34033015ccae82ff085cec0d58dfea27 https://www.encodeproject.org/files/ENCFF957VSD/@@download/ENCFF957VSD.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF039PBB bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF786QGA 4632809 ENCODE Processing Pipeline c5eb36ae5ce07910b68754eeede062fa https://www.encodeproject.org/files/ENCFF039PBB/@@download/ENCFF039PBB.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF466GNI bed narrowPeak conservative idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF039PBB, ENCFF326RNA, ENCFF967PXA 148745 ENCODE Processing Pipeline 20f9510bc71b862444bf2988076d30d4 https://www.encodeproject.org/files/ENCFF466GNI/@@download/ENCFF466GNI.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF131FBY bigBed narrowPeak optimal idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF735WFO 359990 ENCODE Processing Pipeline 9de67d854ebee6ad1f92bc3af9d4129c https://www.encodeproject.org/files/ENCFF131FBY/@@download/ENCFF131FBY.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF865LGI bigWig signal p-value ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF017YFK, ENCFF261DNQ, ENCFF956QBZ 942348215 ENCODE Processing Pipeline e3da7e903e0c17580f3965354d5c426e https://www.encodeproject.org/files/ENCFF865LGI/@@download/ENCFF865LGI.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF529CKP bigWig fold change over control ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF261DNQ, ENCFF786QGA, ENCFF956QBZ 1162747988 ENCODE Processing Pipeline 35332e0bf1160bb8b72724e4b8bed2ff https://www.encodeproject.org/files/ENCFF529CKP/@@download/ENCFF529CKP.bigWig hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF276KPI bigBed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF039PBB 11126569 ENCODE Processing Pipeline bce66b17cb97dcd15541e1da969afed7 https://www.encodeproject.org/files/ENCFF276KPI/@@download/ENCFF276KPI.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF735WFO bed narrowPeak optimal idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF039PBB, ENCFF326RNA, ENCFF967PXA 200875 ENCODE Processing Pipeline 29c10e45fa37cf7416d81f1e6f977d5c https://www.encodeproject.org/files/ENCFF735WFO/@@download/ENCFF735WFO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF326RNA bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF017YFK, ENCFF261DNQ, ENCFF956QBZ 5545311 ENCODE Processing Pipeline 82d0574b5b05e75ab2e3490417e6043d https://www.encodeproject.org/files/ENCFF326RNA/@@download/ENCFF326RNA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF967PXA bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF017YFK, ENCFF261DNQ, ENCFF786QGA, ENCFF956QBZ 6155842 ENCODE Processing Pipeline 1eef3d55861df929e166c52da4d6062e https://www.encodeproject.org/files/ENCFF967PXA/@@download/ENCFF967PXA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF509ILA bigBed narrowPeak conservative idr thresholded peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF466GNI 291216 ENCODE Processing Pipeline 3a13273a675243428fad9074810a092f https://www.encodeproject.org/files/ENCFF509ILA/@@download/ENCFF509ILA.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF905RXC bigBed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF326RNA 11521544 ENCODE Processing Pipeline ed84fd50850653570b7ff08371b687d6 https://www.encodeproject.org/files/ENCFF905RXC/@@download/ENCFF905RXC.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF953HVS bigBed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF967PXA 11621631 ENCODE Processing Pipeline 8c40781bf67019dc183abfecb9763baf https://www.encodeproject.org/files/ENCFF953HVS/@@download/ENCFF953HVS.bigBed hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF644FQD fastq reads ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 479806527 Xiang-Dong Fu, UCSD 74fd6353c9e02115e3e6070e4b7098be https://www.encodeproject.org/files/ENCFF644FQD/@@download/ENCFF644FQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF317LUD/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF641MET fastq reads ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 389790194 Xiang-Dong Fu, UCSD c52aa5db5ca47d088557aff24dffca14 https://www.encodeproject.org/files/ENCFF641MET/@@download/ENCFF641MET.fastq.gz Illumina HiSeq 2000 /files/ENCFF338QTL/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF889CIT fastq reads ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 1199204608 Xiang-Dong Fu, UCSD 1a47a87f9299ccb428ef66f1b3eac23e https://www.encodeproject.org/files/ENCFF889CIT/@@download/ENCFF889CIT.fastq.gz Illumina HiSeq 2500 /files/ENCFF338QTL/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF481WGG fastq reads ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 1307706891 Xiang-Dong Fu, UCSD e964224d7d63920fcf2606ec09e7c0ed https://www.encodeproject.org/files/ENCFF481WGG/@@download/ENCFF481WGG.fastq.gz Illumina HiSeq 2500 /files/ENCFF317LUD/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF984LCY bam unfiltered alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF641MET, ENCFF807MUK, ENCFF889CIT 1541656143 ENCODE Processing Pipeline 9143a731c489fdd20972c3cc6062b311 https://www.encodeproject.org/files/ENCFF984LCY/@@download/ENCFF984LCY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF732PIN bam unfiltered alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF641MET, ENCFF643CGH, ENCFF889CIT 1550028118 ENCODE Processing Pipeline 366465a98f7f1f11b90a1283ecffcd49 https://www.encodeproject.org/files/ENCFF732PIN/@@download/ENCFF732PIN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF539TFD bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF641MET, ENCFF643CGH, ENCFF889CIT 430362376 ENCODE Processing Pipeline 5ee1b599b133c89241da620fea4be17e https://www.encodeproject.org/files/ENCFF539TFD/@@download/ENCFF539TFD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF806CJS bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF641MET, ENCFF807MUK, ENCFF889CIT 430948053 ENCODE Processing Pipeline b97a2819a9129a4accd263b32d58f77a https://www.encodeproject.org/files/ENCFF806CJS/@@download/ENCFF806CJS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF150WBW bam unfiltered alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF481WGG, ENCFF644FQD, ENCFF807MUK 1688322217 ENCODE Processing Pipeline 948bbdd15ff9c434a48419274b0a3c3a https://www.encodeproject.org/files/ENCFF150WBW/@@download/ENCFF150WBW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF119AKS bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF481WGG, ENCFF644FQD, ENCFF807MUK 400961139 ENCODE Processing Pipeline 7f086fec185ed6473a6414ca3b06b55f https://www.encodeproject.org/files/ENCFF119AKS/@@download/ENCFF119AKS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF881LTT bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF481WGG, ENCFF643CGH, ENCFF644FQD 400380975 ENCODE Processing Pipeline 85c5c45fdcda801aafd23a98527626ce https://www.encodeproject.org/files/ENCFF881LTT/@@download/ENCFF881LTT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF289DTU bam unfiltered alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF481WGG, ENCFF643CGH, ENCFF644FQD 1697037200 ENCODE Processing Pipeline b7c1efc037c0f35424c26ea12f4e3f56 https://www.encodeproject.org/files/ENCFF289DTU/@@download/ENCFF289DTU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF039SFF bigWig signal p-value ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF345ODV, ENCFF539TFD, ENCFF836GUS, ENCFF881LTT 913519412 ENCODE Processing Pipeline 0477ea2fa3431d2144b09fae12d2dc0f https://www.encodeproject.org/files/ENCFF039SFF/@@download/ENCFF039SFF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF910GMC bigWig fold change over control ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF836GUS, ENCFF881LTT 302637424 ENCODE Processing Pipeline 8a32f145963d8453c9fbb498b8fc5fde https://www.encodeproject.org/files/ENCFF910GMC/@@download/ENCFF910GMC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF722HLE bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF836GUS, ENCFF881LTT 5566832 ENCODE Processing Pipeline 7c784a51d26cf8d8a63d3e7c2a305e87 https://www.encodeproject.org/files/ENCFF722HLE/@@download/ENCFF722HLE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF121LOV bigBed narrowPeak optimal idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF467RYH 428194 ENCODE Processing Pipeline 7a6262b93860f68b888d3bc2a3f3ed58 https://www.encodeproject.org/files/ENCFF121LOV/@@download/ENCFF121LOV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF839MTO bigWig signal p-value ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF345ODV, ENCFF539TFD 515254886 ENCODE Processing Pipeline f3b4b002c08c713f0e49d3a4d551b938 https://www.encodeproject.org/files/ENCFF839MTO/@@download/ENCFF839MTO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF661UAG bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF345ODV, ENCFF539TFD 5662694 ENCODE Processing Pipeline e432a30d48407554b83aa8189b704eba https://www.encodeproject.org/files/ENCFF661UAG/@@download/ENCFF661UAG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF144CHJ bed narrowPeak conservative idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF661UAG, ENCFF722HLE, ENCFF748GCS 175798 ENCODE Processing Pipeline cff1deee18aa5cd41bc45d6dcee0c725 https://www.encodeproject.org/files/ENCFF144CHJ/@@download/ENCFF144CHJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF334DTH bigBed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF722HLE 13137412 ENCODE Processing Pipeline 457f937aa0bd08bdbe35e739c87fe31e https://www.encodeproject.org/files/ENCFF334DTH/@@download/ENCFF334DTH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF543YPC bigBed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF748GCS 13311040 ENCODE Processing Pipeline 85aa8277aab1f4c0282314190a4a0efd https://www.encodeproject.org/files/ENCFF543YPC/@@download/ENCFF543YPC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF467RYH bed narrowPeak optimal idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF419RSJ, ENCFF661UAG, ENCFF722HLE, ENCFF748GCS 189337 ENCODE Processing Pipeline 45e9c0449a5d16f8e53288cbc33ef4aa https://www.encodeproject.org/files/ENCFF467RYH/@@download/ENCFF467RYH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF521VPM bigWig fold change over control ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF345ODV, ENCFF539TFD, ENCFF836GUS, ENCFF881LTT 741593469 ENCODE Processing Pipeline 741f2406a5caa1c094acbd5f1164a0e4 https://www.encodeproject.org/files/ENCFF521VPM/@@download/ENCFF521VPM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF748GCS bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF345ODV, ENCFF539TFD, ENCFF836GUS, ENCFF881LTT 6763134 ENCODE Processing Pipeline c96da195441499e8615a28c05c554685 https://www.encodeproject.org/files/ENCFF748GCS/@@download/ENCFF748GCS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF350OTU bigBed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF661UAG 13222847 ENCODE Processing Pipeline 4a1e3112ee43581b24124b841498108b https://www.encodeproject.org/files/ENCFF350OTU/@@download/ENCFF350OTU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF500CGR bigBed narrowPeak conservative idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF144CHJ 404748 ENCODE Processing Pipeline d773486eb0c4f260961784812cc214cb https://www.encodeproject.org/files/ENCFF500CGR/@@download/ENCFF500CGR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF120HAV bigWig signal p-value ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF836GUS, ENCFF881LTT 474086061 ENCODE Processing Pipeline cbc62530c816608ec06dde54a03a9cb6 https://www.encodeproject.org/files/ENCFF120HAV/@@download/ENCFF120HAV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF480SRL bigWig fold change over control ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF345ODV, ENCFF539TFD 335299948 ENCODE Processing Pipeline 55428f514bdfa2ccd2e929dd7daf37ee https://www.encodeproject.org/files/ENCFF480SRL/@@download/ENCFF480SRL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF402WTE bigWig signal p-value ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF119AKS, ENCFF502LLI 480548163 ENCODE Processing Pipeline d6b7b957f79b13fc8e9ce9ec9b0993f8 https://www.encodeproject.org/files/ENCFF402WTE/@@download/ENCFF402WTE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF609JWE bigWig fold change over control ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF119AKS, ENCFF502LLI 299978306 ENCODE Processing Pipeline fed6f88795bbb98aa95b5ea7f979563c https://www.encodeproject.org/files/ENCFF609JWE/@@download/ENCFF609JWE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF430KJL bigWig signal p-value ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF325CNX, ENCFF806CJS 496031149 ENCODE Processing Pipeline 48ee57de2668fcbabba06fe6e3cace7c https://www.encodeproject.org/files/ENCFF430KJL/@@download/ENCFF430KJL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF388PGZ bigBed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF921JTC 13096503 ENCODE Processing Pipeline fa7c917207733579aa4891fab4c1b151 https://www.encodeproject.org/files/ENCFF388PGZ/@@download/ENCFF388PGZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF850EDP bigWig signal p-value ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF119AKS, ENCFF325CNX, ENCFF502LLI, ENCFF806CJS 925720480 ENCODE Processing Pipeline 0da8663542d8905b27e3906bd760176f https://www.encodeproject.org/files/ENCFF850EDP/@@download/ENCFF850EDP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF340HZR bigWig fold change over control ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF119AKS, ENCFF325CNX, ENCFF502LLI, ENCFF806CJS 761014181 ENCODE Processing Pipeline 4567b3e050ecd7cc7c175425a8112eff https://www.encodeproject.org/files/ENCFF340HZR/@@download/ENCFF340HZR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF086XWF bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF119AKS, ENCFF325CNX, ENCFF502LLI, ENCFF806CJS 6830133 ENCODE Processing Pipeline b03e7e2558323f6378a66f70b35e72d4 https://www.encodeproject.org/files/ENCFF086XWF/@@download/ENCFF086XWF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF612KIF bigBed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF656LKP 13206018 ENCODE Processing Pipeline 1c20baa66d94311375180f35e4079530 https://www.encodeproject.org/files/ENCFF612KIF/@@download/ENCFF612KIF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF048VNL bigBed narrowPeak optimal idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF941RVL 437226 ENCODE Processing Pipeline e194ed316dc96872a1430e99921e3ecf https://www.encodeproject.org/files/ENCFF048VNL/@@download/ENCFF048VNL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF882OWS bigWig fold change over control ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF325CNX, ENCFF806CJS 335221435 ENCODE Processing Pipeline 654b5a4b7075df6dc8afba7f45f7da65 https://www.encodeproject.org/files/ENCFF882OWS/@@download/ENCFF882OWS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF921JTC bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF119AKS, ENCFF502LLI 5614290 ENCODE Processing Pipeline ad20690d2c1bcb19d44409d9c0d69cd4 https://www.encodeproject.org/files/ENCFF921JTC/@@download/ENCFF921JTC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF476JMC bigBed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF086XWF 13260875 ENCODE Processing Pipeline 5aa05599d13ed0bd5afe5a553e5292c0 https://www.encodeproject.org/files/ENCFF476JMC/@@download/ENCFF476JMC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF941RVL bed narrowPeak optimal idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF086XWF, ENCFF656LKP, ENCFF921JTC 198461 ENCODE Processing Pipeline 8fd9450404706c39c0454c49bc4f916f https://www.encodeproject.org/files/ENCFF941RVL/@@download/ENCFF941RVL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF395QCV bigBed narrowPeak conservative idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF632GIY 416550 ENCODE Processing Pipeline 21ff9e9a877cf8a0436cb557d1a89750 https://www.encodeproject.org/files/ENCFF395QCV/@@download/ENCFF395QCV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF656LKP bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF325CNX, ENCFF806CJS 5732253 ENCODE Processing Pipeline 4cbc1e54392aa9472a8b9c37e4fbbb43 https://www.encodeproject.org/files/ENCFF656LKP/@@download/ENCFF656LKP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF632GIY bed narrowPeak conservative idr thresholded peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF086XWF, ENCFF656LKP, ENCFF921JTC 185662 ENCODE Processing Pipeline 9c61aa669e2517a32c9f6b40efc1809e https://www.encodeproject.org/files/ENCFF632GIY/@@download/ENCFF632GIY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF232KYF bam unfiltered alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 50 ENCFF166AWJ, ENCFF358JWM, ENCFF807MUK 1703538761 ENCODE Processing Pipeline f12505ac73c0c94ace0d628574bf2dc4 https://www.encodeproject.org/files/ENCFF232KYF/@@download/ENCFF232KYF.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF394VMG bam unfiltered alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 50 ENCFF180XGO, ENCFF807MUK, ENCFF988NSQ 1390494117 ENCODE Processing Pipeline aca5ea2c05c586e55a562890e21dd85f https://www.encodeproject.org/files/ENCFF394VMG/@@download/ENCFF394VMG.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF709ELM fastq reads ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 1 1 50 single-ended 628010529 Kevin White, UChicago 890c2d4bd318a9047e4f7a625f67e4da https://www.encodeproject.org/files/ENCFF709ELM/@@download/ENCFF709ELM.fastq.gz Illumina HiSeq 2500 /files/ENCFF748FSB/ archived control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF988NSQ fastq reads ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 1 50 single-ended 489989848 Kevin White, UChicago 0d31fcd66a4c42d7d4b05e575c69cd09 https://www.encodeproject.org/files/ENCFF988NSQ/@@download/ENCFF988NSQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF748FSB/ released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF358JWM fastq reads ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 1 50 single-ended 707041578 Kevin White, UChicago 99378c852c5be68251cbb125ffcf045a https://www.encodeproject.org/files/ENCFF358JWM/@@download/ENCFF358JWM.fastq.gz Illumina HiSeq 2500 /files/ENCFF748FSB/ released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF190YEE fastq reads ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 1 1 50 single-ended 108278353 Kevin White, UChicago edf676c91938682a87f230b147c17b01 https://www.encodeproject.org/files/ENCFF190YEE/@@download/ENCFF190YEE.fastq.gz Illumina HiSeq 2000 /files/ENCFF748FSB/ archived control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF166AWJ fastq reads ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 1 50 single-ended 877858005 Kevin White, UChicago 4c846c1bbc508e485270559171f3d9f1 https://www.encodeproject.org/files/ENCFF166AWJ/@@download/ENCFF166AWJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF748FSB/ released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF180XGO fastq reads ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 1 50 single-ended 764616332 Kevin White, UChicago 5cb65fe771f4615784d8211982cc93f6 https://www.encodeproject.org/files/ENCFF180XGO/@@download/ENCFF180XGO.fastq.gz Illumina HiSeq 2500 /files/ENCFF748FSB/ released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF974GMB bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 1 ENCFF190YEE, ENCFF709ELM, ENCFF807MUK 608932959 ENCODE Processing Pipeline 136e501c4bacf4aab87debab20d76648 https://www.encodeproject.org/files/ENCFF974GMB/@@download/ENCFF974GMB.bam hg19 archived control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF380DQS bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF180XGO, ENCFF807MUK, ENCFF988NSQ 1076891192 ENCODE Processing Pipeline 4536f8285bdeb1de706beabc4213f491 https://www.encodeproject.org/files/ENCFF380DQS/@@download/ENCFF380DQS.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF487EDR bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF166AWJ, ENCFF358JWM, ENCFF807MUK 1290696666 ENCODE Processing Pipeline 356c38ae1f7b804628d0a3bf9a0c7065 https://www.encodeproject.org/files/ENCFF487EDR/@@download/ENCFF487EDR.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF186QYY bam unfiltered alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 50 ENCFF180XGO, ENCFF643CGH, ENCFF988NSQ 1396107613 ENCODE Processing Pipeline 5f5e5136e81623501b76b3e1adfd29d3 https://www.encodeproject.org/files/ENCFF186QYY/@@download/ENCFF186QYY.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF155JVO bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 50 ENCFF180XGO, ENCFF643CGH, ENCFF988NSQ 1076302557 ENCODE Processing Pipeline bb5a62d5b1f0a6c6063994c0765a3e12 https://www.encodeproject.org/files/ENCFF155JVO/@@download/ENCFF155JVO.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF771AMR bam unfiltered alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 50 ENCFF166AWJ, ENCFF358JWM, ENCFF643CGH 1709358249 ENCODE Processing Pipeline 559240e3355a3dc9291c4ff2127758b8 https://www.encodeproject.org/files/ENCFF771AMR/@@download/ENCFF771AMR.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF438XHU bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 50 ENCFF166AWJ, ENCFF358JWM, ENCFF643CGH 1289945267 ENCODE Processing Pipeline 244d6b19a8443bb3da93092846d2a888 https://www.encodeproject.org/files/ENCFF438XHU/@@download/ENCFF438XHU.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF926HZQ bigWig signal p-value ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF266BSJ, ENCFF380DQS, ENCFF487EDR 455498361 ENCODE Processing Pipeline cbb1fa8ec1f8afd71f5d1a42d6810759 https://www.encodeproject.org/files/ENCFF926HZQ/@@download/ENCFF926HZQ.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF516GMY bigWig signal p-value ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF266BSJ, ENCFF487EDR 478465425 ENCODE Processing Pipeline 75eb198b46ef49f08cf20f8aff086d8a https://www.encodeproject.org/files/ENCFF516GMY/@@download/ENCFF516GMY.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF432AZP bigBed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF016RIL 13162872 ENCODE Processing Pipeline 88f3e1cb43061a366d492235faca44cd https://www.encodeproject.org/files/ENCFF432AZP/@@download/ENCFF432AZP.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF561XVS bigWig fold change over control ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF266BSJ, ENCFF380DQS, ENCFF487EDR 816822398 ENCODE Processing Pipeline 10ae26406fc76cd3c8a4f83c4a84f807 https://www.encodeproject.org/files/ENCFF561XVS/@@download/ENCFF561XVS.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF387NJK bigBed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF997KYE 12956928 ENCODE Processing Pipeline 032c5e7829defd7540fa986b5090c341 https://www.encodeproject.org/files/ENCFF387NJK/@@download/ENCFF387NJK.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF649BGQ bigWig fold change over control ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF266BSJ, ENCFF380DQS 477846658 ENCODE Processing Pipeline 74b60e22aedde5cee9d24095e1791e58 https://www.encodeproject.org/files/ENCFF649BGQ/@@download/ENCFF649BGQ.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF986DSB bigBed narrowPeak conservative idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF413TRG 577007 ENCODE Processing Pipeline 303c3847277943d8515184d316cbfd7e https://www.encodeproject.org/files/ENCFF986DSB/@@download/ENCFF986DSB.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF016GDI bigWig fold change over control ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF266BSJ, ENCFF487EDR 558392191 ENCODE Processing Pipeline 7009e18c6822631a63de895572316a76 https://www.encodeproject.org/files/ENCFF016GDI/@@download/ENCFF016GDI.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF097BNT bigBed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF696LOS 12999859 ENCODE Processing Pipeline 9f71b25482007394202c03fa8d7bbabc https://www.encodeproject.org/files/ENCFF097BNT/@@download/ENCFF097BNT.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF413TRG bed narrowPeak conservative idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF001TDO, ENCFF016RIL, ENCFF696LOS, ENCFF997KYE 261997 ENCODE Processing Pipeline af10f3d0b988f3db5bedc64c65a34cc2 https://www.encodeproject.org/files/ENCFF413TRG/@@download/ENCFF413TRG.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF995IAC bed narrowPeak optimal idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF001TDO, ENCFF016RIL, ENCFF696LOS, ENCFF997KYE 350377 ENCODE Processing Pipeline 5fc18b2a8f2ddbf62a95eb4350681ef0 https://www.encodeproject.org/files/ENCFF995IAC/@@download/ENCFF995IAC.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF012RUC bigWig signal p-value ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF266BSJ, ENCFF380DQS 468609675 ENCODE Processing Pipeline f170022129afd006417d32bf6ff9ab21 https://www.encodeproject.org/files/ENCFF012RUC/@@download/ENCFF012RUC.bigWig hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF997KYE bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF266BSJ, ENCFF487EDR 6453669 ENCODE Processing Pipeline ce6afeb7bed75e0c3e91c7bc06053b62 https://www.encodeproject.org/files/ENCFF997KYE/@@download/ENCFF997KYE.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF696LOS bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF266BSJ, ENCFF380DQS, ENCFF487EDR 6805260 ENCODE Processing Pipeline bb0f0ea1b5ef316ba97bab1890dd653d https://www.encodeproject.org/files/ENCFF696LOS/@@download/ENCFF696LOS.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF841JIB bigBed narrowPeak optimal idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF995IAC 713169 ENCODE Processing Pipeline c05f5a9de27e14cee26f4579f4679233 https://www.encodeproject.org/files/ENCFF841JIB/@@download/ENCFF841JIB.bigBed hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF016RIL bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF266BSJ, ENCFF380DQS 5528435 ENCODE Processing Pipeline fdf6f45287ff29286dd7035ff27beeae https://www.encodeproject.org/files/ENCFF016RIL/@@download/ENCFF016RIL.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF582ZTK bigWig signal p-value ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF155JVO, ENCFF758WOL 472479215 ENCODE Processing Pipeline 7733b9d31587a42bf1b58327b6a5daed https://www.encodeproject.org/files/ENCFF582ZTK/@@download/ENCFF582ZTK.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF838GNT bigWig signal p-value ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF438XHU, ENCFF758WOL 466855115 ENCODE Processing Pipeline 64cd36da58d2ddbb9a046430ab27d6c9 https://www.encodeproject.org/files/ENCFF838GNT/@@download/ENCFF838GNT.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF294ORX bigWig signal p-value ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF155JVO, ENCFF438XHU, ENCFF758WOL 455218034 ENCODE Processing Pipeline 6d6c90aa95582e478c5e0573a5430624 https://www.encodeproject.org/files/ENCFF294ORX/@@download/ENCFF294ORX.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF677CTQ bigBed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF209DCT 12971105 ENCODE Processing Pipeline 9cd0d8ef1feeca8b5c948a1338b6d4e6 https://www.encodeproject.org/files/ENCFF677CTQ/@@download/ENCFF677CTQ.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF318MYB bigWig fold change over control ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF438XHU, ENCFF758WOL 544567244 ENCODE Processing Pipeline 83e32180bc8dd26c321bc01a01744b51 https://www.encodeproject.org/files/ENCFF318MYB/@@download/ENCFF318MYB.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF836TFW bigWig fold change over control ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF155JVO, ENCFF438XHU, ENCFF758WOL 819023580 ENCODE Processing Pipeline 0c04d3cb5bbc99dae73204ea3faf5606 https://www.encodeproject.org/files/ENCFF836TFW/@@download/ENCFF836TFW.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF729WVO bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF155JVO, ENCFF758WOL 5547122 ENCODE Processing Pipeline f0154bf48b12a98da61fc7e72555a31c https://www.encodeproject.org/files/ENCFF729WVO/@@download/ENCFF729WVO.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF209DCT bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF438XHU, ENCFF758WOL 6459159 ENCODE Processing Pipeline 15b7b4abf47d2f2d62e978db719ae45f https://www.encodeproject.org/files/ENCFF209DCT/@@download/ENCFF209DCT.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF621AHM bigWig fold change over control ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF155JVO, ENCFF758WOL 484682223 ENCODE Processing Pipeline 6c26870024b88fc724a96ffd9adedd15 https://www.encodeproject.org/files/ENCFF621AHM/@@download/ENCFF621AHM.bigWig GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF845EPR bigBed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF729WVO 13173331 ENCODE Processing Pipeline a9a9105c3adff1aabfb120d57d658724 https://www.encodeproject.org/files/ENCFF845EPR/@@download/ENCFF845EPR.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF584XHJ bigBed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF291TTY 13006297 ENCODE Processing Pipeline 65eccbdd48619f1f98be587cf596a048 https://www.encodeproject.org/files/ENCFF584XHJ/@@download/ENCFF584XHJ.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF545JMF bigBed narrowPeak conservative idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF619KPM 582299 ENCODE Processing Pipeline 0a21dfd73c8dab11f3e9cd802442e32f https://www.encodeproject.org/files/ENCFF545JMF/@@download/ENCFF545JMF.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF291TTY bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF155JVO, ENCFF438XHU, ENCFF758WOL 6806385 ENCODE Processing Pipeline bb8caddea29d6c5fa06ec0bba16ad8bb https://www.encodeproject.org/files/ENCFF291TTY/@@download/ENCFF291TTY.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF619KPM bed narrowPeak conservative idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF209DCT, ENCFF291TTY, ENCFF419RSJ, ENCFF729WVO 265211 ENCODE Processing Pipeline f4524e62d2597d5001b12db2c76c47d9 https://www.encodeproject.org/files/ENCFF619KPM/@@download/ENCFF619KPM.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF312NVO bed narrowPeak optimal idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF209DCT, ENCFF291TTY, ENCFF419RSJ, ENCFF729WVO 357551 ENCODE Processing Pipeline c2cf5f805de40ee8d34fd1f833b9c9ba https://www.encodeproject.org/files/ENCFF312NVO/@@download/ENCFF312NVO.bed.gz GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF892NKM bigBed narrowPeak optimal idr thresholded peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3, 4 ENCFF312NVO 724848 ENCODE Processing Pipeline 15f55699eaded9732b69abe058d12635 https://www.encodeproject.org/files/ENCFF892NKM/@@download/ENCFF892NKM.bigBed GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF841ZWA fastq reads ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 1 100 paired-ended 2 ENCFF089HED 3292613091 Michael Snyder, Stanford c2234b6a33c9a69b811be8b7908cfebf SRA:SRR5112165 https://www.encodeproject.org/files/ENCFF841ZWA/@@download/ENCFF841ZWA.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking ENCFF089HED fastq reads ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 1 100 paired-ended 1 ENCFF841ZWA 3102333533 Michael Snyder, Stanford 5c8e632dc9fe7560e7a417632f629a26 SRA:SRR5112165 https://www.encodeproject.org/files/ENCFF089HED/@@download/ENCFF089HED.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking ENCFF035MMH fastq reads ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 1 100 paired-ended 1 ENCFF800CLX 3783511844 Michael Snyder, Stanford d55bcddcc26b278bd9e9021a6fd291af SRA:SRR5112166 https://www.encodeproject.org/files/ENCFF035MMH/@@download/ENCFF035MMH.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking ENCFF800CLX fastq reads ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 1 100 paired-ended 2 ENCFF035MMH 4002931155 Michael Snyder, Stanford e55d0cad7377759f3e24a92435c0733e SRA:SRR5112166 https://www.encodeproject.org/files/ENCFF800CLX/@@download/ENCFF800CLX.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking ENCFF023JXK bam unfiltered alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 100 ENCFF089HED, ENCFF807MUK, ENCFF841ZWA 6087998546 ENCODE Processing Pipeline e9dc8223421119ef5f78fa000c32615b https://www.encodeproject.org/files/ENCFF023JXK/@@download/ENCFF023JXK.bam hg19 released mild to moderate bottlenecking ENCFF219YXK bam unfiltered alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 100 ENCFF089HED, ENCFF643CGH, ENCFF841ZWA 6095451759 ENCODE Processing Pipeline d348de4e343d5b5095d8097c8240fba4 https://www.encodeproject.org/files/ENCFF219YXK/@@download/ENCFF219YXK.bam GRCh38 released mild to moderate bottlenecking ENCFF315CKY bam unfiltered alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 100 ENCFF035MMH, ENCFF643CGH, ENCFF800CLX 7308174603 ENCODE Processing Pipeline df5036302063fe4c7bfbb324ab9acc90 https://www.encodeproject.org/files/ENCFF315CKY/@@download/ENCFF315CKY.bam GRCh38 released mild to moderate bottlenecking ENCFF891UWP bam unfiltered alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 100 ENCFF035MMH, ENCFF800CLX, ENCFF807MUK 7300352248 ENCODE Processing Pipeline d23bbcf21f7e540342c25ed8d2454d4a https://www.encodeproject.org/files/ENCFF891UWP/@@download/ENCFF891UWP.bam hg19 released mild to moderate bottlenecking ENCFF763WJE bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 100 ENCFF089HED, ENCFF643CGH, ENCFF841ZWA 4566950992 ENCODE Processing Pipeline a4f336380b5ed901bac01fd92318a192 https://www.encodeproject.org/files/ENCFF763WJE/@@download/ENCFF763WJE.bam GRCh38 released mild to moderate bottlenecking ENCFF606EGM bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 100 ENCFF089HED, ENCFF807MUK, ENCFF841ZWA 4561963669 ENCODE Processing Pipeline 2b7d55163ed79bc5fff1833b03e98d15 https://www.encodeproject.org/files/ENCFF606EGM/@@download/ENCFF606EGM.bam hg19 released mild to moderate bottlenecking ENCFF517RCT bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 100 ENCFF035MMH, ENCFF643CGH, ENCFF800CLX 5682160469 ENCODE Processing Pipeline 0ef1ea137bbb29ccc8e1ff8f6e7bf9c5 https://www.encodeproject.org/files/ENCFF517RCT/@@download/ENCFF517RCT.bam GRCh38 released mild to moderate bottlenecking ENCFF799UMW bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 100 ENCFF035MMH, ENCFF800CLX, ENCFF807MUK 5676426005 ENCODE Processing Pipeline 8f2f98d1e656c323681af81789c59649 https://www.encodeproject.org/files/ENCFF799UMW/@@download/ENCFF799UMW.bam hg19 released mild to moderate bottlenecking ENCFF148BKJ bigWig signal p-value ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF705ARK, ENCFF763WJE, ENCFF802NAW 1472561926 ENCODE Processing Pipeline 6b03d34709e21bdfae43d979c36a22d6 https://www.encodeproject.org/files/ENCFF148BKJ/@@download/ENCFF148BKJ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF666ZMU bigWig signal p-value ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF517RCT, ENCFF705ARK, ENCFF802NAW 1895507633 ENCODE Processing Pipeline 85e6fc2f5089975b203293130676eef4 https://www.encodeproject.org/files/ENCFF666ZMU/@@download/ENCFF666ZMU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF694TCU bigWig signal p-value ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF517RCT, ENCFF705ARK, ENCFF763WJE, ENCFF802NAW 2371145901 ENCODE Processing Pipeline c7bd4aed18332861511d689d92343267 https://www.encodeproject.org/files/ENCFF694TCU/@@download/ENCFF694TCU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF028OHV bigWig fold change over control ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF705ARK, ENCFF763WJE, ENCFF802NAW 1875886004 ENCODE Processing Pipeline 604df199cd5ff5d39e5472a2839fa1ac https://www.encodeproject.org/files/ENCFF028OHV/@@download/ENCFF028OHV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF754AXE bigWig fold change over control ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF517RCT, ENCFF705ARK, ENCFF802NAW 2045562302 ENCODE Processing Pipeline c0112c7d232c402e0f25f68701f98562 https://www.encodeproject.org/files/ENCFF754AXE/@@download/ENCFF754AXE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF817OXY bigWig fold change over control ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF517RCT, ENCFF705ARK, ENCFF763WJE, ENCFF802NAW 2584473933 ENCODE Processing Pipeline d789a45e609938c1a19ed6e4d3488ba8 https://www.encodeproject.org/files/ENCFF817OXY/@@download/ENCFF817OXY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF919GWY bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF705ARK, ENCFF763WJE, ENCFF802NAW 7080379 ENCODE Processing Pipeline 5e9ec8bd80adddaec00864fbbf425c52 https://www.encodeproject.org/files/ENCFF919GWY/@@download/ENCFF919GWY.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF447PKR bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF517RCT, ENCFF705ARK, ENCFF802NAW 7183407 ENCODE Processing Pipeline 2099091ddbb9c7bccee76b426d81651c https://www.encodeproject.org/files/ENCFF447PKR/@@download/ENCFF447PKR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF555ZFI bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF517RCT, ENCFF705ARK, ENCFF763WJE, ENCFF802NAW 7260113 ENCODE Processing Pipeline 1856caba33675244a732c0ea9d74bacf https://www.encodeproject.org/files/ENCFF555ZFI/@@download/ENCFF555ZFI.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF027YEX bigBed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF447PKR 13395890 ENCODE Processing Pipeline bd8f5bba9c734aeb3d41c47ab805071c https://www.encodeproject.org/files/ENCFF027YEX/@@download/ENCFF027YEX.bigBed GRCh38 released mild to moderate bottlenecking ENCFF353KDZ bigBed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF919GWY 13434236 ENCODE Processing Pipeline 00ff848570a79719cdd25cca356d0675 https://www.encodeproject.org/files/ENCFF353KDZ/@@download/ENCFF353KDZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF100HSN bigBed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF555ZFI 13343622 ENCODE Processing Pipeline 659693e3f802bae467ce2d73ea57cdbe https://www.encodeproject.org/files/ENCFF100HSN/@@download/ENCFF100HSN.bigBed GRCh38 released mild to moderate bottlenecking ENCFF150MRK bed narrowPeak conservative idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF447PKR, ENCFF555ZFI, ENCFF919GWY 487520 ENCODE Processing Pipeline ac415bbf34e2ee0ce7082115e88f23bd https://www.encodeproject.org/files/ENCFF150MRK/@@download/ENCFF150MRK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF638AOM bigBed narrowPeak conservative idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF150MRK 1202300 ENCODE Processing Pipeline 43b451b1db2334e0f3c0c37607c1a3d5 https://www.encodeproject.org/files/ENCFF638AOM/@@download/ENCFF638AOM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF156RLT bed narrowPeak optimal idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF447PKR, ENCFF555ZFI, ENCFF919GWY 491941 ENCODE Processing Pipeline c9ca67a59bfc42a971106cc150a59497 https://www.encodeproject.org/files/ENCFF156RLT/@@download/ENCFF156RLT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF035YBL bigBed narrowPeak optimal idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF156RLT 1006336 ENCODE Processing Pipeline c9eac67fd7dae5d65d710289320b4a1e https://www.encodeproject.org/files/ENCFF035YBL/@@download/ENCFF035YBL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF102KPU bigWig signal p-value ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN 1865627968 ENCODE Processing Pipeline 9d22990959a6c252b56e75450cd8b596 https://www.encodeproject.org/files/ENCFF102KPU/@@download/ENCFF102KPU.bigWig hg19 released mild to moderate bottlenecking ENCFF255EXT bigWig signal p-value ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF529BVI, ENCFF772FBN, ENCFF799UMW 1698893686 ENCODE Processing Pipeline fe3bd5a447db6c071e602f7b328a3689 https://www.encodeproject.org/files/ENCFF255EXT/@@download/ENCFF255EXT.bigWig hg19 released mild to moderate bottlenecking ENCFF734ZUO bigWig signal p-value ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN, ENCFF799UMW 2367537566 ENCODE Processing Pipeline 1886469e1c8c063dffeddb9fd7b9e6ea https://www.encodeproject.org/files/ENCFF734ZUO/@@download/ENCFF734ZUO.bigWig hg19 released mild to moderate bottlenecking ENCFF499KCW bigWig fold change over control ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN 1874100454 ENCODE Processing Pipeline 35626a91d680a899ff61c1ce4a64baee https://www.encodeproject.org/files/ENCFF499KCW/@@download/ENCFF499KCW.bigWig hg19 released mild to moderate bottlenecking ENCFF972FME bigWig fold change over control ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF529BVI, ENCFF772FBN, ENCFF799UMW 2043795063 ENCODE Processing Pipeline 5958b941b9c01aec8f2dc5f6b4ac16a8 https://www.encodeproject.org/files/ENCFF972FME/@@download/ENCFF972FME.bigWig hg19 released mild to moderate bottlenecking ENCFF730CLD bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN 7076180 ENCODE Processing Pipeline 4bb3949417e1b55a046348465c1ed5e4 https://www.encodeproject.org/files/ENCFF730CLD/@@download/ENCFF730CLD.bed.gz hg19 released mild to moderate bottlenecking ENCFF320GCE bigBed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF394TJZ 13386996 ENCODE Processing Pipeline 1b3e32433e92993663b9ff3d916623fe https://www.encodeproject.org/files/ENCFF320GCE/@@download/ENCFF320GCE.bigBed hg19 released mild to moderate bottlenecking ENCFF985JTQ bigBed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF730CLD 13416974 ENCODE Processing Pipeline 025a6b16aaefab4a5cc8ffa801b4f6ed https://www.encodeproject.org/files/ENCFF985JTQ/@@download/ENCFF985JTQ.bigBed hg19 released mild to moderate bottlenecking ENCFF109CSV bigBed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF836EUO 13328836 ENCODE Processing Pipeline d52802bf3e448e73551edcbaf827f849 https://www.encodeproject.org/files/ENCFF109CSV/@@download/ENCFF109CSV.bigBed hg19 released mild to moderate bottlenecking ENCFF960UCN bigWig fold change over control ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN, ENCFF799UMW 2576499147 ENCODE Processing Pipeline c2f2b881bea2190b6227d8f4400bb5e0 https://www.encodeproject.org/files/ENCFF960UCN/@@download/ENCFF960UCN.bigWig hg19 released mild to moderate bottlenecking ENCFF394TJZ bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF529BVI, ENCFF772FBN, ENCFF799UMW 7185318 ENCODE Processing Pipeline 6a104764cb58aa2147a1fb511325a5ac https://www.encodeproject.org/files/ENCFF394TJZ/@@download/ENCFF394TJZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF510DWO bigBed narrowPeak optimal idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF520CSO 1007302 ENCODE Processing Pipeline 693983bf0480460b7d8d66218b886cd4 https://www.encodeproject.org/files/ENCFF510DWO/@@download/ENCFF510DWO.bigBed hg19 released mild to moderate bottlenecking ENCFF836EUO bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN, ENCFF799UMW 7252184 ENCODE Processing Pipeline 9dce76a8ec868ab969e481999b6b9df4 https://www.encodeproject.org/files/ENCFF836EUO/@@download/ENCFF836EUO.bed.gz hg19 released mild to moderate bottlenecking ENCFF753OOX bed narrowPeak conservative idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF001TDO, ENCFF394TJZ, ENCFF730CLD, ENCFF836EUO 487486 ENCODE Processing Pipeline 7ccdd986602a1e1ac990f865874bad36 https://www.encodeproject.org/files/ENCFF753OOX/@@download/ENCFF753OOX.bed.gz hg19 released mild to moderate bottlenecking ENCFF520CSO bed narrowPeak optimal idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF001TDO, ENCFF394TJZ, ENCFF730CLD, ENCFF836EUO 494230 ENCODE Processing Pipeline 630131dae357dfd7d8bf962892cbc130 https://www.encodeproject.org/files/ENCFF520CSO/@@download/ENCFF520CSO.bed.gz hg19 released mild to moderate bottlenecking ENCFF634ISF bigBed narrowPeak conservative idr thresholded peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1, 2 ENCFF753OOX 1199453 ENCODE Processing Pipeline 802b54258f952ae743c79b48732433e2 https://www.encodeproject.org/files/ENCFF634ISF/@@download/ENCFF634ISF.bigBed hg19 released mild to moderate bottlenecking ENCFF539SVN fastq reads ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 412353904 Xiang-Dong Fu, UCSD 178e61899b096aeac9c6505473060737 https://www.encodeproject.org/files/ENCFF539SVN/@@download/ENCFF539SVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF439OMO/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF455MEZ fastq reads ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 374046231 Xiang-Dong Fu, UCSD 8ac973aee70dbef9b2f59740cb67af6a https://www.encodeproject.org/files/ENCFF455MEZ/@@download/ENCFF455MEZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF087SCF/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF405TWQ fastq reads ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 1562961604 Xiang-Dong Fu, UCSD c21578d3f10166d633c12d745fba6b60 https://www.encodeproject.org/files/ENCFF405TWQ/@@download/ENCFF405TWQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF439OMO/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF426HJF fastq reads ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 1708262437 Xiang-Dong Fu, UCSD fa0a5d0be4a33011516b5c3a27a1940c https://www.encodeproject.org/files/ENCFF426HJF/@@download/ENCFF426HJF.fastq.gz Illumina HiSeq 2500 /files/ENCFF087SCF/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF860WYW bam unfiltered alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF426HJF, ENCFF455MEZ, ENCFF643CGH 2007804806 ENCODE Processing Pipeline 99fb35b0801e20ac6f73b9c105b1a41c https://www.encodeproject.org/files/ENCFF860WYW/@@download/ENCFF860WYW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF588GTL bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF426HJF, ENCFF455MEZ, ENCFF643CGH 372158885 ENCODE Processing Pipeline 4e6e402fd9cb1b4d591048fe8bac60c3 https://www.encodeproject.org/files/ENCFF588GTL/@@download/ENCFF588GTL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF913ATA bam unfiltered alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF405TWQ, ENCFF539SVN, ENCFF643CGH 1916764759 ENCODE Processing Pipeline 865728bca27ef2c4dd798f06bdc444d9 https://www.encodeproject.org/files/ENCFF913ATA/@@download/ENCFF913ATA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF714PRB bam unfiltered alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF405TWQ, ENCFF539SVN, ENCFF807MUK 1907435077 ENCODE Processing Pipeline 89bbd9740812f1b2642c94307c692383 https://www.encodeproject.org/files/ENCFF714PRB/@@download/ENCFF714PRB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF760WGC bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF405TWQ, ENCFF539SVN, ENCFF643CGH 413222457 ENCODE Processing Pipeline 9b206d6f7c197adc9503d117b1811538 https://www.encodeproject.org/files/ENCFF760WGC/@@download/ENCFF760WGC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF152TEK bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF405TWQ, ENCFF539SVN, ENCFF807MUK 413729962 ENCODE Processing Pipeline d2e401d1b0d7c5a3348cd237c2b7f59a https://www.encodeproject.org/files/ENCFF152TEK/@@download/ENCFF152TEK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF262VMC bam unfiltered alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF426HJF, ENCFF455MEZ, ENCFF807MUK 1998151979 ENCODE Processing Pipeline e14e1dfc1901b7572cc61a6c5eb9a1c0 https://www.encodeproject.org/files/ENCFF262VMC/@@download/ENCFF262VMC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF584SKU bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF426HJF, ENCFF455MEZ, ENCFF807MUK 372645427 ENCODE Processing Pipeline b8875887b69057cbe546b12a7c9056a2 https://www.encodeproject.org/files/ENCFF584SKU/@@download/ENCFF584SKU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF854OYD bigWig fold change over control ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF375ZQH, ENCFF588GTL, ENCFF760WGC, ENCFF819KWY 684449634 ENCODE Processing Pipeline f7d9cbbb57ca0aa2d58c7a50c3c63654 https://www.encodeproject.org/files/ENCFF854OYD/@@download/ENCFF854OYD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF706ZDC bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF760WGC, ENCFF819KWY 5400865 ENCODE Processing Pipeline 695f1b9f6228ae14903a7f0d3ab9d5f5 https://www.encodeproject.org/files/ENCFF706ZDC/@@download/ENCFF706ZDC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF456YPY bigBed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF052YKV 13259969 ENCODE Processing Pipeline 3d5ee547a988fd6e41fe6d2d683eb3a1 https://www.encodeproject.org/files/ENCFF456YPY/@@download/ENCFF456YPY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF889ZXM bigBed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF054IHO 13466507 ENCODE Processing Pipeline 85c284cd708a8d658a36da31fea6b94e https://www.encodeproject.org/files/ENCFF889ZXM/@@download/ENCFF889ZXM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF320ORV bigWig fold change over control ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF760WGC, ENCFF819KWY 321764044 ENCODE Processing Pipeline 41cfb1b0e23e8b3d6bdf9675ab99da99 https://www.encodeproject.org/files/ENCFF320ORV/@@download/ENCFF320ORV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF589EVC bigWig signal p-value ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF375ZQH, ENCFF588GTL 518644927 ENCODE Processing Pipeline c171c396421d33961e9902d6d90f490f https://www.encodeproject.org/files/ENCFF589EVC/@@download/ENCFF589EVC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF550AVU bed narrowPeak conservative idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF052YKV, ENCFF054IHO, ENCFF419RSJ, ENCFF706ZDC 188795 ENCODE Processing Pipeline 09aec6db7836b9236284a5c7be5630db https://www.encodeproject.org/files/ENCFF550AVU/@@download/ENCFF550AVU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF052YKV bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF375ZQH, ENCFF588GTL 5314610 ENCODE Processing Pipeline 0cf2753438fb4d6d54ba68e3014cd43a https://www.encodeproject.org/files/ENCFF052YKV/@@download/ENCFF052YKV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF054IHO bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF375ZQH, ENCFF588GTL, ENCFF760WGC, ENCFF819KWY 6819149 ENCODE Processing Pipeline 3e55910e754ce5e50ef70a31478858db https://www.encodeproject.org/files/ENCFF054IHO/@@download/ENCFF054IHO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF998MVM bigWig signal p-value ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF760WGC, ENCFF819KWY 519989529 ENCODE Processing Pipeline 4fdd75542ec0651e0671360798b015fd https://www.encodeproject.org/files/ENCFF998MVM/@@download/ENCFF998MVM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF584FXT bigWig signal p-value ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF375ZQH, ENCFF588GTL, ENCFF760WGC, ENCFF819KWY 869296228 ENCODE Processing Pipeline dd0d2a48f49cc3dc3ea21af27443e0af https://www.encodeproject.org/files/ENCFF584FXT/@@download/ENCFF584FXT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF900MON bigWig fold change over control ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF375ZQH, ENCFF588GTL 290628728 ENCODE Processing Pipeline 9b07df80f711ef21e601315770115411 https://www.encodeproject.org/files/ENCFF900MON/@@download/ENCFF900MON.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF369OVQ bigBed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF706ZDC 13327691 ENCODE Processing Pipeline eca19b2bb0de38ce32de1f8af742379f https://www.encodeproject.org/files/ENCFF369OVQ/@@download/ENCFF369OVQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF984QUV bed narrowPeak optimal idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF052YKV, ENCFF054IHO, ENCFF419RSJ, ENCFF706ZDC 194431 ENCODE Processing Pipeline 31321af501f20a997860dd4e431d9053 https://www.encodeproject.org/files/ENCFF984QUV/@@download/ENCFF984QUV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF421AQS bigBed narrowPeak conservative idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF550AVU 395440 ENCODE Processing Pipeline 0999dede2e5f0e2f14e8344f22675f16 https://www.encodeproject.org/files/ENCFF421AQS/@@download/ENCFF421AQS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF237MTB bigBed narrowPeak optimal idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF984QUV 402748 ENCODE Processing Pipeline 06916ba667724e09e1bc670b32331439 https://www.encodeproject.org/files/ENCFF237MTB/@@download/ENCFF237MTB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF465JMD bigWig signal p-value ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021SBT, ENCFF152TEK 566074862 ENCODE Processing Pipeline 1b502ca92ad0d394bf0c25726a790676 https://www.encodeproject.org/files/ENCFF465JMD/@@download/ENCFF465JMD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF267ADT bigWig fold change over control ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021SBT, ENCFF152TEK 300893147 ENCODE Processing Pipeline 4d3f4797be6b5af24223b39a69453b22 https://www.encodeproject.org/files/ENCFF267ADT/@@download/ENCFF267ADT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF733NAT bigWig signal p-value ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF221JFQ, ENCFF584SKU 506569206 ENCODE Processing Pipeline ef43185532887f64bae64c99477d0491 https://www.encodeproject.org/files/ENCFF733NAT/@@download/ENCFF733NAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF784XCG bigWig fold change over control ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF221JFQ, ENCFF584SKU 285558018 ENCODE Processing Pipeline 4432510ff281d9155a23fa3e5679c3c8 https://www.encodeproject.org/files/ENCFF784XCG/@@download/ENCFF784XCG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF754BMR bigWig fold change over control ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021SBT, ENCFF152TEK, ENCFF221JFQ, ENCFF584SKU 685435819 ENCODE Processing Pipeline fbbebc33abf482be2e5775261495dbaa https://www.encodeproject.org/files/ENCFF754BMR/@@download/ENCFF754BMR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF253OJD bigBed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF439JKZ 13302002 ENCODE Processing Pipeline 3e61a3fd286293e9074b855b9cd1ca19 https://www.encodeproject.org/files/ENCFF253OJD/@@download/ENCFF253OJD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF382ULC bigBed narrowPeak conservative idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF936IJD 400255 ENCODE Processing Pipeline 5b5bc84d644055ff559b1328456c0688 https://www.encodeproject.org/files/ENCFF382ULC/@@download/ENCFF382ULC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF982ECU bigWig signal p-value ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021SBT, ENCFF152TEK, ENCFF221JFQ, ENCFF584SKU 919929932 ENCODE Processing Pipeline 8596686d2512cf93b8c0035cd7597a39 https://www.encodeproject.org/files/ENCFF982ECU/@@download/ENCFF982ECU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF439JKZ bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021SBT, ENCFF152TEK 5434497 ENCODE Processing Pipeline 59a464a69517252724b7eb1cdfa9d73d https://www.encodeproject.org/files/ENCFF439JKZ/@@download/ENCFF439JKZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF477QHE bigBed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF409JZE 13487903 ENCODE Processing Pipeline e6d7531c139f271ed272a9dde9003cea https://www.encodeproject.org/files/ENCFF477QHE/@@download/ENCFF477QHE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF936IJD bed narrowPeak conservative idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF037LWJ, ENCFF409JZE, ENCFF439JKZ 193151 ENCODE Processing Pipeline 1f6855240c7134024e44b963afae12cf https://www.encodeproject.org/files/ENCFF936IJD/@@download/ENCFF936IJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF409JZE bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021SBT, ENCFF152TEK, ENCFF221JFQ, ENCFF584SKU 6888183 ENCODE Processing Pipeline 3da0ba679e03f44204ce0c1291d1f4ed https://www.encodeproject.org/files/ENCFF409JZE/@@download/ENCFF409JZE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF399ZFX bigBed narrowPeak optimal idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF777CWV 408934 ENCODE Processing Pipeline 63627d9843af27b691e3ec6db6fb9298 https://www.encodeproject.org/files/ENCFF399ZFX/@@download/ENCFF399ZFX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF037LWJ bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF221JFQ, ENCFF584SKU 5373755 ENCODE Processing Pipeline 7debde54ef88e8ffa439ba7ffd770114 https://www.encodeproject.org/files/ENCFF037LWJ/@@download/ENCFF037LWJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF958BGI bigBed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF037LWJ 13256985 ENCODE Processing Pipeline 726aea1273614c8e0e0b483446886dfb https://www.encodeproject.org/files/ENCFF958BGI/@@download/ENCFF958BGI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF777CWV bed narrowPeak optimal idr thresholded peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF037LWJ, ENCFF409JZE, ENCFF439JKZ 198809 ENCODE Processing Pipeline 8eacb6c36160d8886684bfef22a5db39 https://www.encodeproject.org/files/ENCFF777CWV/@@download/ENCFF777CWV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF600HHA fastq reads ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 1 101 paired-ended 1 ENCFF965WYW 2619879013 Michael Snyder, Stanford 63677ec80065aca28d35b6e716c92a2a https://www.encodeproject.org/files/ENCFF600HHA/@@download/ENCFF600HHA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF965WYW fastq reads ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 1 101 paired-ended 2 ENCFF600HHA 2693853590 Michael Snyder, Stanford 5ff5c3751ddbd4e8cad6ca318fcf8de1 https://www.encodeproject.org/files/ENCFF965WYW/@@download/ENCFF965WYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF033UNB bam unfiltered alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 101 ENCFF600HHA, ENCFF643CGH, ENCFF965WYW 5867850660 ENCODE Processing Pipeline 81c098b95a94680bae4b9bbadc3f5164 https://www.encodeproject.org/files/ENCFF033UNB/@@download/ENCFF033UNB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF411VRC bam unfiltered alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 101 ENCFF600HHA, ENCFF807MUK, ENCFF965WYW 5863929273 ENCODE Processing Pipeline 929dc3e22a9c690cb52cee5936ddd412 https://www.encodeproject.org/files/ENCFF411VRC/@@download/ENCFF411VRC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF070IDW bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 101 ENCFF600HHA, ENCFF807MUK, ENCFF965WYW 4773838516 ENCODE Processing Pipeline 4d0b717a3c00c609d0fbda505b0da57b https://www.encodeproject.org/files/ENCFF070IDW/@@download/ENCFF070IDW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF475KUF bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 101 ENCFF600HHA, ENCFF643CGH, ENCFF965WYW 4775830688 ENCODE Processing Pipeline e75e2bbad05a5cca2d31c8a0acab90f2 https://www.encodeproject.org/files/ENCFF475KUF/@@download/ENCFF475KUF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF469LDY bigWig signal p-value ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF475KUF 1484799475 ENCODE Processing Pipeline c457ffa08b94641a0a5155a16bcb0809 https://www.encodeproject.org/files/ENCFF469LDY/@@download/ENCFF469LDY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF039PLQ bigWig fold change over control ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF475KUF 1424914056 ENCODE Processing Pipeline c367fdaf42f02cac178da4eb6d074185 https://www.encodeproject.org/files/ENCFF039PLQ/@@download/ENCFF039PLQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF238ESR bigWig signal p-value ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF070IDW 1434725550 ENCODE Processing Pipeline fc44fbc94f40442b82f6a3fe1d62c691 https://www.encodeproject.org/files/ENCFF238ESR/@@download/ENCFF238ESR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF743WQF bigWig fold change over control ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF070IDW 1398142344 ENCODE Processing Pipeline ab420698950ec4e2b82177a7f598018f https://www.encodeproject.org/files/ENCFF743WQF/@@download/ENCFF743WQF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF200HEP bigBed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF210XHR 11324533 ENCODE Processing Pipeline 3146f37d1df912d3bca01b4c76871837 https://www.encodeproject.org/files/ENCFF200HEP/@@download/ENCFF200HEP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF924PNB bigBed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF405XFK 11328425 ENCODE Processing Pipeline a3498d57c9ee3971c617211334e2b964 https://www.encodeproject.org/files/ENCFF924PNB/@@download/ENCFF924PNB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF319JUQ fastq reads ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 1 101 paired-ended 1 ENCFF481WSE 4749961207 Michael Snyder, Stanford fa65bc0f33479d6894d12ee36bff0dce https://www.encodeproject.org/files/ENCFF319JUQ/@@download/ENCFF319JUQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF481WSE fastq reads ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 1 101 paired-ended 2 ENCFF319JUQ 4833601282 Michael Snyder, Stanford 16e56b30a5244ed7d9986b38aad58a2c https://www.encodeproject.org/files/ENCFF481WSE/@@download/ENCFF481WSE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF732TCX bam unfiltered alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 101 ENCFF319JUQ, ENCFF481WSE, ENCFF807MUK 9058131248 ENCODE Processing Pipeline 9513955345f14d6201b0f3b11bd4ef79 https://www.encodeproject.org/files/ENCFF732TCX/@@download/ENCFF732TCX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF347ZFD bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 101 ENCFF319JUQ, ENCFF481WSE, ENCFF807MUK 7223264466 ENCODE Processing Pipeline 00b5ae691ed8fae46abb1d593de6fa23 https://www.encodeproject.org/files/ENCFF347ZFD/@@download/ENCFF347ZFD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF889DSV bam unfiltered alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 101 ENCFF319JUQ, ENCFF481WSE, ENCFF643CGH 9069530290 ENCODE Processing Pipeline 51de1034b12b2ce67f50d8385af6f5ff https://www.encodeproject.org/files/ENCFF889DSV/@@download/ENCFF889DSV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF762KOL bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 101 ENCFF319JUQ, ENCFF481WSE, ENCFF643CGH 7221649582 ENCODE Processing Pipeline 08a9e290bb45e61526cf0845e2c3a1e8 https://www.encodeproject.org/files/ENCFF762KOL/@@download/ENCFF762KOL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF056QES bigWig signal p-value ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF762KOL 1425517452 ENCODE Processing Pipeline 111a499851674b38de31d27da91f3950 https://www.encodeproject.org/files/ENCFF056QES/@@download/ENCFF056QES.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF887CTB bigWig signal p-value ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF070IDW, ENCFF347ZFD 1968215637 ENCODE Processing Pipeline 0dd3b8284a610b10ff96e22cee0e35ed https://www.encodeproject.org/files/ENCFF887CTB/@@download/ENCFF887CTB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF062WYM bigWig signal p-value ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF475KUF, ENCFF762KOL 1961732165 ENCODE Processing Pipeline a9cc601b678830ff3b1a8155c175a1a6 https://www.encodeproject.org/files/ENCFF062WYM/@@download/ENCFF062WYM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF336ING bigWig signal p-value ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF347ZFD 1528208422 ENCODE Processing Pipeline 947d23b327ad60d473ed1a9b98b2ddb1 https://www.encodeproject.org/files/ENCFF336ING/@@download/ENCFF336ING.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF968CCX bigWig fold change over control ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF347ZFD 1771759394 ENCODE Processing Pipeline 45d0e28ceb918b6019c8c893cc74ab2d https://www.encodeproject.org/files/ENCFF968CCX/@@download/ENCFF968CCX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF821ZMZ bigWig fold change over control ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF762KOL 1762807688 ENCODE Processing Pipeline 194c1f86ebcb4a2159d68e3ae4c9ed80 https://www.encodeproject.org/files/ENCFF821ZMZ/@@download/ENCFF821ZMZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF515YNU bigWig fold change over control ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF475KUF, ENCFF762KOL 2196683586 ENCODE Processing Pipeline 8c3cc3f125d6b8cba4460441537e8dbe https://www.encodeproject.org/files/ENCFF515YNU/@@download/ENCFF515YNU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF458MPT bigWig fold change over control ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF070IDW, ENCFF347ZFD 2204199978 ENCODE Processing Pipeline 5d29c90ec836123cd56b379bdd49659d https://www.encodeproject.org/files/ENCFF458MPT/@@download/ENCFF458MPT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF690BQH bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF347ZFD 6773414 ENCODE Processing Pipeline 33b515bdeba4bb3327026455865eb281 https://www.encodeproject.org/files/ENCFF690BQH/@@download/ENCFF690BQH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF782ZFD bigBed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF418BPX 11280849 ENCODE Processing Pipeline cf1cdfcc924a493f6f1aeb18238fc043 https://www.encodeproject.org/files/ENCFF782ZFD/@@download/ENCFF782ZFD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF505CFQ bigBed narrowPeak conservative idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF702BCG 69614 ENCODE Processing Pipeline 959fa0435f3e7574b472c39013be8011 https://www.encodeproject.org/files/ENCFF505CFQ/@@download/ENCFF505CFQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF193LIK bed narrowPeak optimal idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF148UBC, ENCFF405XFK, ENCFF418BPX, ENCFF419RSJ 104971 ENCODE Processing Pipeline 1978e31fb986b00857404430b94e98d6 https://www.encodeproject.org/files/ENCFF193LIK/@@download/ENCFF193LIK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF210XHR bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF070IDW 6375320 ENCODE Processing Pipeline c536df48481e32f1f30e56c061c0ad0f https://www.encodeproject.org/files/ENCFF210XHR/@@download/ENCFF210XHR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF808KLR bigBed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF148UBC 11001938 ENCODE Processing Pipeline 99754a09ebd76a7fe35515dc06009ef8 https://www.encodeproject.org/files/ENCFF808KLR/@@download/ENCFF808KLR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF355HPD bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF070IDW, ENCFF347ZFD 7299502 ENCODE Processing Pipeline 70af23fa5d2112c8e96eab093720b29c https://www.encodeproject.org/files/ENCFF355HPD/@@download/ENCFF355HPD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF405XFK bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF475KUF 6368297 ENCODE Processing Pipeline fccdeb13b50b1c390c34ca9957eb3813 https://www.encodeproject.org/files/ENCFF405XFK/@@download/ENCFF405XFK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF212JLL bigBed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF690BQH 11027932 ENCODE Processing Pipeline 529449d0109af8273cffc1c1c9ae144b https://www.encodeproject.org/files/ENCFF212JLL/@@download/ENCFF212JLL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF702BCG bed narrowPeak conservative idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF148UBC, ENCFF405XFK, ENCFF418BPX, ENCFF419RSJ 14668 ENCODE Processing Pipeline 970bfc576ca5322b1fcd347278e36315 https://www.encodeproject.org/files/ENCFF702BCG/@@download/ENCFF702BCG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF148UBC bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF762KOL 6807390 ENCODE Processing Pipeline b98d32ef093c16087152fb552bef8216 https://www.encodeproject.org/files/ENCFF148UBC/@@download/ENCFF148UBC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF418BPX bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF475KUF, ENCFF762KOL 7283361 ENCODE Processing Pipeline 2ed5442477755d72a17c2bcf5dc626a7 https://www.encodeproject.org/files/ENCFF418BPX/@@download/ENCFF418BPX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF446PPV bigBed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF355HPD 11272006 ENCODE Processing Pipeline 15f849e795eeecefc8a49759ef2cae93 https://www.encodeproject.org/files/ENCFF446PPV/@@download/ENCFF446PPV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF299IRD bigBed narrowPeak conservative idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF674TSK 69105 ENCODE Processing Pipeline ac63c49f55702e852dfbf72e8faaba38 https://www.encodeproject.org/files/ENCFF299IRD/@@download/ENCFF299IRD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF572WXJ bed narrowPeak optimal idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF001TDO, ENCFF210XHR, ENCFF355HPD, ENCFF690BQH 103751 ENCODE Processing Pipeline 660ad8e23100863f0c553b4f6850b50b https://www.encodeproject.org/files/ENCFF572WXJ/@@download/ENCFF572WXJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF674TSK bed narrowPeak conservative idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF001TDO, ENCFF210XHR, ENCFF355HPD, ENCFF690BQH 14670 ENCODE Processing Pipeline 50b4706e08c4602892a27fd3793c827c https://www.encodeproject.org/files/ENCFF674TSK/@@download/ENCFF674TSK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF035RJN bigBed narrowPeak optimal idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF572WXJ 217223 ENCODE Processing Pipeline 75948d2a279285e89d30ffbd729bb5d5 https://www.encodeproject.org/files/ENCFF035RJN/@@download/ENCFF035RJN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF949OVA bigBed narrowPeak optimal idr thresholded peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1, 2 ENCFF193LIK 219721 ENCODE Processing Pipeline 367615c26f08b125ed953d29e8f5f62e https://www.encodeproject.org/files/ENCFF949OVA/@@download/ENCFF949OVA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF741BVE fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF317NXG 1680062999 Michael Snyder, Stanford d936273f84807bbb8060f43fd52b369d SRA:SRR6213000 https://www.encodeproject.org/files/ENCFF741BVE/@@download/ENCFF741BVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, low read depth ENCFF531UQG fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF044LTS 1826452886 Michael Snyder, Stanford a39cfaa96adaab3f25c37e25bb2c3601 SRA:SRR6212999 https://www.encodeproject.org/files/ENCFF531UQG/@@download/ENCFF531UQG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, low read depth ENCFF317NXG fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF741BVE 1616468313 Michael Snyder, Stanford f0a2aef25000f14514ffa0371d16952e SRA:SRR6213000 https://www.encodeproject.org/files/ENCFF317NXG/@@download/ENCFF317NXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, low read depth ENCFF044LTS fastq reads ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF531UQG 1759562116 Michael Snyder, Stanford 52c43eaeb8f9831239bcb48fcfc4c47c SRA:SRR6212999 https://www.encodeproject.org/files/ENCFF044LTS/@@download/ENCFF044LTS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, low read depth ENCFF252NHP bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF807MUK 3001222249 ENCODE Processing Pipeline 254263894d22164fa5676905536f9120 https://www.encodeproject.org/files/ENCFF252NHP/@@download/ENCFF252NHP.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF037RQQ bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF741BVE, ENCFF807MUK 3006665060 ENCODE Processing Pipeline 70d5bf2c52433d3e9d38e40a4a22e08a https://www.encodeproject.org/files/ENCFF037RQQ/@@download/ENCFF037RQQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF678OPA bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 1040617485 ENCODE Processing Pipeline fd439c4d7337a4c9caa01d6257ab7c80 https://www.encodeproject.org/files/ENCFF678OPA/@@download/ENCFF678OPA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF325DWJ bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 1029512272 ENCODE Processing Pipeline d2e96e8e6a818c02a140e1d2b183d07c https://www.encodeproject.org/files/ENCFF325DWJ/@@download/ENCFF325DWJ.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF688SES bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF037RQQ, ENCFF252NHP, ENCFF287SKW, ENCFF941TZZ 1787873070 ENCODE Processing Pipeline ea690a46e4fb13fd801237e81f9fe5ce https://www.encodeproject.org/files/ENCFF688SES/@@download/ENCFF688SES.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF581XVC bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 928808609 ENCODE Processing Pipeline 8c8b7f42713aa768fa8a426c4ed14381 https://www.encodeproject.org/files/ENCFF581XVC/@@download/ENCFF581XVC.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF061YZT bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 924107484 ENCODE Processing Pipeline ee1d8204dc45c93d64d609c88ec2a35e https://www.encodeproject.org/files/ENCFF061YZT/@@download/ENCFF061YZT.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF998ZHO bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF037RQQ, ENCFF252NHP, ENCFF287SKW, ENCFF941TZZ 1861042771 ENCODE Processing Pipeline 0b5ef6c67d049a898973a76468b8fc70 https://www.encodeproject.org/files/ENCFF998ZHO/@@download/ENCFF998ZHO.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF225TLM bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 6637467 ENCODE Processing Pipeline 56d8b699f70428bd1566f7c6c2fe4a0d https://www.encodeproject.org/files/ENCFF225TLM/@@download/ENCFF225TLM.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF599YTI bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF938MOR 12995632 ENCODE Processing Pipeline aaa6d24c4ef86de935ed7bdf81267039 https://www.encodeproject.org/files/ENCFF599YTI/@@download/ENCFF599YTI.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF640EFU bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF037RQQ, ENCFF252NHP, ENCFF287SKW, ENCFF941TZZ 7068555 ENCODE Processing Pipeline ec0756f6b5cb528468d14db20ab920cb https://www.encodeproject.org/files/ENCFF640EFU/@@download/ENCFF640EFU.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF271CZX bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF225TLM 13180282 ENCODE Processing Pipeline 596d6c5790498a31270831f7350261bd https://www.encodeproject.org/files/ENCFF271CZX/@@download/ENCFF271CZX.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF938MOR bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 6540097 ENCODE Processing Pipeline cbc8a15cdab8f4e87b0f7d36e768ecd3 https://www.encodeproject.org/files/ENCFF938MOR/@@download/ENCFF938MOR.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF586UYJ bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF640EFU 13136741 ENCODE Processing Pipeline 8fc9be4bb250988d7bf00d82eb98c0dc https://www.encodeproject.org/files/ENCFF586UYJ/@@download/ENCFF586UYJ.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF251IUU bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF643CGH, ENCFF741BVE 3591293425 ENCODE Processing Pipeline acafeea6b11e6ec5f092fc22f77d668e https://www.encodeproject.org/files/ENCFF251IUU/@@download/ENCFF251IUU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF141CYV bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF643CGH 3832695793 ENCODE Processing Pipeline 6e18d980c30f9292d515b13316f9cc33 https://www.encodeproject.org/files/ENCFF141CYV/@@download/ENCFF141CYV.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF860ICZ bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF643CGH, ENCFF741BVE 3010711139 ENCODE Processing Pipeline 401dfcf0a8a2b87044b73e103c62b290 https://www.encodeproject.org/files/ENCFF860ICZ/@@download/ENCFF860ICZ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF556ZRU bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF643CGH 3005696308 ENCODE Processing Pipeline c5f720fd17e007a75418900b6f114302 https://www.encodeproject.org/files/ENCFF556ZRU/@@download/ENCFF556ZRU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF630HZQ bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556ZRU, ENCFF879YMO 6752207 ENCODE Processing Pipeline d311ae4b7695db30793e32eae8b20ef6 https://www.encodeproject.org/files/ENCFF630HZQ/@@download/ENCFF630HZQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF648YPN bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF574BGV, ENCFF860ICZ 6484811 ENCODE Processing Pipeline 2320afa331387512607adc8bc08de83c https://www.encodeproject.org/files/ENCFF648YPN/@@download/ENCFF648YPN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF987GMB bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556ZRU, ENCFF879YMO 1141395610 ENCODE Processing Pipeline a2adbe6903953206931f71641fa570a5 https://www.encodeproject.org/files/ENCFF987GMB/@@download/ENCFF987GMB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF008BUH bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF574BGV, ENCFF860ICZ 935348735 ENCODE Processing Pipeline db5fcade710699cc7c1721cb154e8510 https://www.encodeproject.org/files/ENCFF008BUH/@@download/ENCFF008BUH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF936LIP bigWig signal p-value ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF556ZRU, ENCFF574BGV, ENCFF860ICZ, ENCFF879YMO 1674469738 ENCODE Processing Pipeline bcf7a2be60203008c33d5508e4c7cd34 https://www.encodeproject.org/files/ENCFF936LIP/@@download/ENCFF936LIP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF009CKM bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF556ZRU, ENCFF879YMO 957162060 ENCODE Processing Pipeline e51ddd3f4a3ce085a6bdea0774c3795a https://www.encodeproject.org/files/ENCFF009CKM/@@download/ENCFF009CKM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF292DTW bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF574BGV, ENCFF860ICZ 916223237 ENCODE Processing Pipeline fc49774a7551d81f7e36088aad98f497 https://www.encodeproject.org/files/ENCFF292DTW/@@download/ENCFF292DTW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF710EKC bigWig fold change over control ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF556ZRU, ENCFF574BGV, ENCFF860ICZ, ENCFF879YMO 1873474912 ENCODE Processing Pipeline 377833460142a54b86745af0da1de2d5 https://www.encodeproject.org/files/ENCFF710EKC/@@download/ENCFF710EKC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF616VIZ bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF556ZRU, ENCFF574BGV, ENCFF860ICZ, ENCFF879YMO 6855311 ENCODE Processing Pipeline a3d5cc4669923fd99a298b9c2c99351e https://www.encodeproject.org/files/ENCFF616VIZ/@@download/ENCFF616VIZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF892EBV bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF630HZQ 13426959 ENCODE Processing Pipeline 7d851777f6ffd4ed1512dbce12b486d7 https://www.encodeproject.org/files/ENCFF892EBV/@@download/ENCFF892EBV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF102FGL bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF648YPN 13031148 ENCODE Processing Pipeline bed55e2315ec87457eec489443d065fc https://www.encodeproject.org/files/ENCFF102FGL/@@download/ENCFF102FGL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF765OEN bigBed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF616VIZ 12910693 ENCODE Processing Pipeline 9de6480084bfbe2bdf13caf7cba549ed https://www.encodeproject.org/files/ENCFF765OEN/@@download/ENCFF765OEN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF667FTY bed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF616VIZ, ENCFF630HZQ, ENCFF648YPN 661587 ENCODE Processing Pipeline 8718f828e8412a7d80913fde174968e1 https://www.encodeproject.org/files/ENCFF667FTY/@@download/ENCFF667FTY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF593EZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF667FTY 1286633 ENCODE Processing Pipeline bfd1b8a0da89b9a8253aead7756f7f0b https://www.encodeproject.org/files/ENCFF593EZZ/@@download/ENCFF593EZZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF495PWL bed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF616VIZ, ENCFF630HZQ, ENCFF648YPN 750675 ENCODE Processing Pipeline 548337c64f783f2a9717de220c5df9e3 https://www.encodeproject.org/files/ENCFF495PWL/@@download/ENCFF495PWL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF218CKD bigBed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF495PWL 1420497 ENCODE Processing Pipeline 9bb2198306567247f4ab5d8c654ec738 https://www.encodeproject.org/files/ENCFF218CKD/@@download/ENCFF218CKD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF049KIT bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF807MUK 3831132666 ENCODE Processing Pipeline 2e51b6980eb3d1f6ba5a2b829ff1b29a https://www.encodeproject.org/files/ENCFF049KIT/@@download/ENCFF049KIT.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF312AHI bam unfiltered alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF741BVE, ENCFF807MUK 3589122040 ENCODE Processing Pipeline 00b15d8b2570c0a44b1ead31bc1c6406 https://www.encodeproject.org/files/ENCFF312AHI/@@download/ENCFF312AHI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF969FVF bed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF225TLM, ENCFF640EFU, ENCFF938MOR 593012 ENCODE Processing Pipeline f04890d02a0249bd9f452aaf432cb5aa https://www.encodeproject.org/files/ENCFF969FVF/@@download/ENCFF969FVF.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF726VEK bed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF225TLM, ENCFF640EFU, ENCFF938MOR 702985 ENCODE Processing Pipeline 854d3dcf4854f6b4f25251cadf429439 https://www.encodeproject.org/files/ENCFF726VEK/@@download/ENCFF726VEK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF453PDN bigBed narrowPeak optimal idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF726VEK 1370968 ENCODE Processing Pipeline 5acb0b121e640ef2b4a24fc39f52f39f https://www.encodeproject.org/files/ENCFF453PDN/@@download/ENCFF453PDN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF088INN bigBed narrowPeak conservative idr thresholded peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF969FVF 1212404 ENCODE Processing Pipeline c0cb1e2709a26843714fa79c9ca3ee47 https://www.encodeproject.org/files/ENCFF088INN/@@download/ENCFF088INN.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF132LVW bam unfiltered alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOY, ENCFF002DUB, ENCFF807MUK 5558094525 ENCODE Processing Pipeline d7a1e9bfa3d5af89a6a4e8c586d76ba9 https://www.encodeproject.org/files/ENCFF132LVW/@@download/ENCFF132LVW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF580KTO bam unfiltered alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOX, ENCFF002EFV, ENCFF807MUK 5410918561 ENCODE Processing Pipeline e4a0b56fbdb1089986120fb14a4f43be https://www.encodeproject.org/files/ENCFF580KTO/@@download/ENCFF580KTO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF614QVH bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 1353740798 ENCODE Processing Pipeline ae9c229520daa71fd63b93a64b8af33f https://www.encodeproject.org/files/ENCFF614QVH/@@download/ENCFF614QVH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF747EPJ bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 1225404419 ENCODE Processing Pipeline 53a8ebf8f918af930668de8bb19a1c4d https://www.encodeproject.org/files/ENCFF747EPJ/@@download/ENCFF747EPJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF156TSE bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 895232442 ENCODE Processing Pipeline 517c147b3a23487f6b6dec377ed774c4 https://www.encodeproject.org/files/ENCFF156TSE/@@download/ENCFF156TSE.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002DOX fastq reads ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EFV 2525249876 Michael Snyder, Stanford f813ad24c0307841d1ee4c3f440242e6 SRA:SRR5111663 https://www.encodeproject.org/files/ENCFF002DOX/@@download/ENCFF002DOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002DOY fastq reads ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002DUB 2809919720 Michael Snyder, Stanford 97289ae854268e7225a13e2f8830c662 SRA:SRR5111662 https://www.encodeproject.org/files/ENCFF002DOY/@@download/ENCFF002DOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002DUB fastq reads ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DOY 2649620327 Michael Snyder, Stanford 09270afe17f979bf8adcf2919447466d SRA:SRR5111662 https://www.encodeproject.org/files/ENCFF002DUB/@@download/ENCFF002DUB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EFV fastq reads ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOX 2536024177 Michael Snyder, Stanford 4ab7b9bcdca066f9e78596ba3b6504f0 SRA:SRR5111663 https://www.encodeproject.org/files/ENCFF002EFV/@@download/ENCFF002EFV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF398XLB bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 1046833057 ENCODE Processing Pipeline 10fdb4b999a2a16e441b55ca0e655509 https://www.encodeproject.org/files/ENCFF398XLB/@@download/ENCFF398XLB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF406YGF bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 6755518 ENCODE Processing Pipeline a33ae1367f5f7bff47dd2433ef6bd489 https://www.encodeproject.org/files/ENCFF406YGF/@@download/ENCFF406YGF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF106AUG bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF558XOV, ENCFF581ZJL, ENCFF747PCD 7204811 ENCODE Processing Pipeline 7712c24501609fb0624096c2ac30e2d1 https://www.encodeproject.org/files/ENCFF106AUG/@@download/ENCFF106AUG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF619KMH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6785961 ENCODE Processing Pipeline 490afc63a5af3a432f36dcda78a69445 https://www.encodeproject.org/files/ENCFF619KMH/@@download/ENCFF619KMH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF887UDO bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF406YGF 13251828 ENCODE Processing Pipeline 77495e3535f1d20d4fc02e1bbed3fadd https://www.encodeproject.org/files/ENCFF887UDO/@@download/ENCFF887UDO.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF949CDR bigBed narrowPeak conservative idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF200PMR 858390 ENCODE Processing Pipeline 16c4e2b4d5e20d5f444b5c04f8194c69 https://www.encodeproject.org/files/ENCFF949CDR/@@download/ENCFF949CDR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF956RQC bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF619KMH 13210083 ENCODE Processing Pipeline e05bbd4ab156c0c4e7a168630f5ff5a4 https://www.encodeproject.org/files/ENCFF956RQC/@@download/ENCFF956RQC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF366VZT bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF106AUG 13110998 ENCODE Processing Pipeline 0436f4356572095bd86ad6552fb56ed4 https://www.encodeproject.org/files/ENCFF366VZT/@@download/ENCFF366VZT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF200PMR bed narrowPeak conservative idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF106AUG, ENCFF406YGF, ENCFF619KMH 412477 ENCODE Processing Pipeline 094488edba74574e5728b916bf77840a https://www.encodeproject.org/files/ENCFF200PMR/@@download/ENCFF200PMR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF213EPU bed narrowPeak optimal idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF106AUG, ENCFF406YGF, ENCFF619KMH 592333 ENCODE Processing Pipeline bfd05e28fd40d1e2a57b194812d2950e https://www.encodeproject.org/files/ENCFF213EPU/@@download/ENCFF213EPU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF565QWK bigBed narrowPeak optimal idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF213EPU 1149743 ENCODE Processing Pipeline 0eec3747aa5a0b42e6cc38ce5fc9989a https://www.encodeproject.org/files/ENCFF565QWK/@@download/ENCFF565QWK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF747PCD bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOX, ENCFF002EFV, ENCFF807MUK 4592581668 ENCODE Processing Pipeline 6b7cf9f68fe1cd540ecb9abed51eec8a https://www.encodeproject.org/files/ENCFF747PCD/@@download/ENCFF747PCD.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF558XOV bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOY, ENCFF002DUB, ENCFF807MUK 3483369737 ENCODE Processing Pipeline 8d2aca8ca825423d0b8cc9da8853b4e9 https://www.encodeproject.org/files/ENCFF558XOV/@@download/ENCFF558XOV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF361KMY bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF558XOV, ENCFF581ZJL, ENCFF747PCD 2098183319 ENCODE Processing Pipeline 565b0252222104291f56f12d91f76d52 https://www.encodeproject.org/files/ENCFF361KMY/@@download/ENCFF361KMY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF301HQP bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 1362115365 ENCODE Processing Pipeline 2f2fc216bf23425a368b01b856b1b01d https://www.encodeproject.org/files/ENCFF301HQP/@@download/ENCFF301HQP.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF012QEQ bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 889270284 ENCODE Processing Pipeline 2e2f8400f06f8ce82270f056f9c1bebc https://www.encodeproject.org/files/ENCFF012QEQ/@@download/ENCFF012QEQ.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF700UMU bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 1230819041 ENCODE Processing Pipeline 273998d61a860944c17531808c636624 https://www.encodeproject.org/files/ENCFF700UMU/@@download/ENCFF700UMU.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF838HZG bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 1039305229 ENCODE Processing Pipeline 1fe42bc99d3865f965238e5331e7c87b https://www.encodeproject.org/files/ENCFF838HZG/@@download/ENCFF838HZG.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF827COK bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF558XOV, ENCFF581ZJL, ENCFF747PCD 2084250918 ENCODE Processing Pipeline 116c167503e1d4e44866802e18d2bbff https://www.encodeproject.org/files/ENCFF827COK/@@download/ENCFF827COK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF313UKE bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 6812372 ENCODE Processing Pipeline 85ba7f28c130cc201d5bef20fda3226d https://www.encodeproject.org/files/ENCFF313UKE/@@download/ENCFF313UKE.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF122FWH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6858089 ENCODE Processing Pipeline 9cd613d51d776b7ba4ac1c3f13831780 https://www.encodeproject.org/files/ENCFF122FWH/@@download/ENCFF122FWH.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF447EKH bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF313UKE 13264659 ENCODE Processing Pipeline 7494de9581f5ef85508f5221a494f6cc https://www.encodeproject.org/files/ENCFF447EKH/@@download/ENCFF447EKH.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF067SOB bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF240NFK 13120669 ENCODE Processing Pipeline a79657036190e90c01c25491cbb4ba7d https://www.encodeproject.org/files/ENCFF067SOB/@@download/ENCFF067SOB.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF240NFK bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF558XOV, ENCFF581ZJL, ENCFF747PCD 7214480 ENCODE Processing Pipeline 511fdf36f68b74570878b1c8145fa532 https://www.encodeproject.org/files/ENCFF240NFK/@@download/ENCFF240NFK.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF522CEZ bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF122FWH 13216272 ENCODE Processing Pipeline c9ed22dfa05d2f7550a639f4209ba3ac https://www.encodeproject.org/files/ENCFF522CEZ/@@download/ENCFF522CEZ.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF957ZDE bam unfiltered alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOX, ENCFF002EFV, ENCFF643CGH 5414575747 ENCODE Processing Pipeline 7bfa08b1e7c2f79f7c72fe35675d4dd4 https://www.encodeproject.org/files/ENCFF957ZDE/@@download/ENCFF957ZDE.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF469LYX bam unfiltered alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOY, ENCFF002DUB, ENCFF643CGH 5558822585 ENCODE Processing Pipeline 696e8a300ec9f432b31a52288a45bd77 https://www.encodeproject.org/files/ENCFF469LYX/@@download/ENCFF469LYX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF857YYV bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOX, ENCFF002EFV, ENCFF643CGH 4592759306 ENCODE Processing Pipeline c22d5b07b53c9cd0ea95e87f412230df https://www.encodeproject.org/files/ENCFF857YYV/@@download/ENCFF857YYV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF320WXN bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOY, ENCFF002DUB, ENCFF643CGH 3484102889 ENCODE Processing Pipeline c250c488144405fe51d4ace719921dbf https://www.encodeproject.org/files/ENCFF320WXN/@@download/ENCFF320WXN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF402PFN bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF857YYV, ENCFF910IKB 1285479388 ENCODE Processing Pipeline 72e8704dbac70d0d6c15c6681a32080c https://www.encodeproject.org/files/ENCFF402PFN/@@download/ENCFF402PFN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF978QFJ bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF320WXN 960761982 ENCODE Processing Pipeline 5df610fd192561b04032361e903b0ba5 https://www.encodeproject.org/files/ENCFF978QFJ/@@download/ENCFF978QFJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF708ZYK bigWig signal p-value ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF320WXN, ENCFF857YYV, ENCFF910IKB 1631111253 ENCODE Processing Pipeline 573987e61610641e21abec800d58493c https://www.encodeproject.org/files/ENCFF708ZYK/@@download/ENCFF708ZYK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF194PEZ bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF857YYV, ENCFF910IKB 1236282386 ENCODE Processing Pipeline d6c2864f25ee4c478ce8a875989ef0da https://www.encodeproject.org/files/ENCFF194PEZ/@@download/ENCFF194PEZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF515CCA bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF320WXN 1047654443 ENCODE Processing Pipeline 284c42892a7aae501f37ebf5ad763ef4 https://www.encodeproject.org/files/ENCFF515CCA/@@download/ENCFF515CCA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF241ISR bigWig fold change over control ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF320WXN, ENCFF857YYV, ENCFF910IKB 2057518111 ENCODE Processing Pipeline 7e5018ad15c5bbda3bd15549f32ce172 https://www.encodeproject.org/files/ENCFF241ISR/@@download/ENCFF241ISR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF936WPW bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF857YYV, ENCFF910IKB 6812175 ENCODE Processing Pipeline e7f4b0c75e14fbd99a48dadaec25ac20 https://www.encodeproject.org/files/ENCFF936WPW/@@download/ENCFF936WPW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF833IMP bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF320WXN 6773022 ENCODE Processing Pipeline 161f9074b0ad77ad6b09990f6a0d57a3 https://www.encodeproject.org/files/ENCFF833IMP/@@download/ENCFF833IMP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF944XDI bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF320WXN, ENCFF857YYV, ENCFF910IKB 7167898 ENCODE Processing Pipeline 3e3fce687a5de40c4f8e897f39351a9a https://www.encodeproject.org/files/ENCFF944XDI/@@download/ENCFF944XDI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF702ZMK bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF936WPW 13369853 ENCODE Processing Pipeline 3dd73528611419b8b3af023c366ebe5f https://www.encodeproject.org/files/ENCFF702ZMK/@@download/ENCFF702ZMK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF582GLY bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF833IMP 13240183 ENCODE Processing Pipeline 549cbde6cfd9730a550aa6b7acb823be https://www.encodeproject.org/files/ENCFF582GLY/@@download/ENCFF582GLY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF131CZW bigBed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF944XDI 13073040 ENCODE Processing Pipeline 5138455089c56f60bf78192ec2ce0fa2 https://www.encodeproject.org/files/ENCFF131CZW/@@download/ENCFF131CZW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF038PPG bed narrowPeak conservative idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF833IMP, ENCFF936WPW, ENCFF944XDI 400835 ENCODE Processing Pipeline b454808d7e4189ea74ef12d1ad33b5a2 https://www.encodeproject.org/files/ENCFF038PPG/@@download/ENCFF038PPG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF068EOO bigBed narrowPeak conservative idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF038PPG 841477 ENCODE Processing Pipeline 649c4402d370b8bb0ee6c1e4f352214e https://www.encodeproject.org/files/ENCFF068EOO/@@download/ENCFF068EOO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF592GWM bed narrowPeak optimal idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF833IMP, ENCFF936WPW, ENCFF944XDI 581507 ENCODE Processing Pipeline 9c784f26d319aa77a01800ad900d28ba https://www.encodeproject.org/files/ENCFF592GWM/@@download/ENCFF592GWM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF782FZC bigBed narrowPeak optimal idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF592GWM 1135343 ENCODE Processing Pipeline 0503d124d7bf7bb803dac300bc4ea7d6 https://www.encodeproject.org/files/ENCFF782FZC/@@download/ENCFF782FZC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF602OKQ bed narrowPeak optimal idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF122FWH, ENCFF240NFK, ENCFF313UKE 520809 ENCODE Processing Pipeline 03db0bf5bd21f1912d550e6072f5ece4 https://www.encodeproject.org/files/ENCFF602OKQ/@@download/ENCFF602OKQ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF058HGE bed narrowPeak conservative idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF122FWH, ENCFF240NFK, ENCFF313UKE 353314 ENCODE Processing Pipeline 54f82fe70fabe92fa9bd9bb44295a1dd https://www.encodeproject.org/files/ENCFF058HGE/@@download/ENCFF058HGE.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF019TYK bigBed narrowPeak conservative idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF058HGE 780501 ENCODE Processing Pipeline 52e593e73851e933596f0c9f63aa1b37 https://www.encodeproject.org/files/ENCFF019TYK/@@download/ENCFF019TYK.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF005PFN bigBed narrowPeak optimal idr thresholded peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF602OKQ 1043514 ENCODE Processing Pipeline 87d58961ab615feaad090e8314ab2d6a https://www.encodeproject.org/files/ENCFF005PFN/@@download/ENCFF005PFN.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF161FHO fastq reads ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 1 40 single-ended 577417312 Xiang-Dong Fu, UCSD 9c66223f7e86614ab56c0c889eaf3029 SRA:SRR6212862 https://www.encodeproject.org/files/ENCFF161FHO/@@download/ENCFF161FHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF911KYO/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF127HYV fastq reads ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 1 40 single-ended 483075621 Xiang-Dong Fu, UCSD d62f65cd98b5ccc5ccc23215ee1fbdb9 SRA:SRR6212861 https://www.encodeproject.org/files/ENCFF127HYV/@@download/ENCFF127HYV.fastq.gz Illumina HiSeq 2000 /files/ENCFF113ZAT/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF600TNX bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF161FHO, ENCFF807MUK 540523904 ENCODE Processing Pipeline a37e4a0e1741cf4e8dde712ae3e2ce0b https://www.encodeproject.org/files/ENCFF600TNX/@@download/ENCFF600TNX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF720XTH bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF127HYV, ENCFF807MUK 401466469 ENCODE Processing Pipeline 4f9f132604d64478cf78abc4aa405338 https://www.encodeproject.org/files/ENCFF720XTH/@@download/ENCFF720XTH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF031UQD bam unfiltered alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF161FHO, ENCFF643CGH 815325107 ENCODE Processing Pipeline 7ef9742a63e59133b2c8c4f0beddedef https://www.encodeproject.org/files/ENCFF031UQD/@@download/ENCFF031UQD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF716DBD bam unfiltered alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF127HYV, ENCFF643CGH 663654968 ENCODE Processing Pipeline 933d4eb295116f9580e4cc4de3f0759c https://www.encodeproject.org/files/ENCFF716DBD/@@download/ENCFF716DBD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF440PPR bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF161FHO, ENCFF643CGH 539985296 ENCODE Processing Pipeline e0d055aa76a98c5ffe9848cd89e5bfa0 https://www.encodeproject.org/files/ENCFF440PPR/@@download/ENCFF440PPR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF572MUD bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF127HYV, ENCFF643CGH 401009288 ENCODE Processing Pipeline b059c4aa1df3533a20cc4e31765da0ba https://www.encodeproject.org/files/ENCFF572MUD/@@download/ENCFF572MUD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF964DJM bigWig signal p-value ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF720XTH, ENCFF922JGL 440667592 ENCODE Processing Pipeline b4c9f73d628c9b3181ef18041c890bbf https://www.encodeproject.org/files/ENCFF964DJM/@@download/ENCFF964DJM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF130UBB bigWig fold change over control ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF600TNX, ENCFF720XTH, ENCFF851QFR, ENCFF922JGL 766171322 ENCODE Processing Pipeline a380282487c37473be24a445988aaa89 https://www.encodeproject.org/files/ENCFF130UBB/@@download/ENCFF130UBB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF029IKY bigWig signal p-value ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF438FAN, ENCFF572MUD 445058524 ENCODE Processing Pipeline dea1afa0341727062ed29fe93e013e1d https://www.encodeproject.org/files/ENCFF029IKY/@@download/ENCFF029IKY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF589TAO bigWig signal p-value ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF600TNX, ENCFF851QFR 475895865 ENCODE Processing Pipeline 62916c94b7da8e92b013e4b146f13df9 https://www.encodeproject.org/files/ENCFF589TAO/@@download/ENCFF589TAO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF111TXR bigWig fold change over control ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF600TNX, ENCFF851QFR 359644825 ENCODE Processing Pipeline 44fe712ff358e19043eebd7c3e288645 https://www.encodeproject.org/files/ENCFF111TXR/@@download/ENCFF111TXR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF555GJI bigBed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF128NOD 11380604 ENCODE Processing Pipeline c09f69a725d183f5e0be4935a2bc3e4c https://www.encodeproject.org/files/ENCFF555GJI/@@download/ENCFF555GJI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF041XBV bigWig signal p-value ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF102RVF, ENCFF440PPR 447707992 ENCODE Processing Pipeline 115fef29c7e2fbc2c1487a7575b3e20e https://www.encodeproject.org/files/ENCFF041XBV/@@download/ENCFF041XBV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF287CQO bigWig fold change over control ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF102RVF, ENCFF440PPR 354822722 ENCODE Processing Pipeline c3c5372280b2bba3ea82128bb584be2a https://www.encodeproject.org/files/ENCFF287CQO/@@download/ENCFF287CQO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF071HOZ bigWig signal p-value ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF600TNX, ENCFF720XTH, ENCFF851QFR, ENCFF922JGL 885460737 ENCODE Processing Pipeline 45514a0fb03636e901b7841f5cb548d4 https://www.encodeproject.org/files/ENCFF071HOZ/@@download/ENCFF071HOZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF128NOD bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF600TNX, ENCFF720XTH, ENCFF851QFR, ENCFF922JGL 6011116 ENCODE Processing Pipeline c3f9c468c4d0e6c12d9fc5a75a3e35c9 https://www.encodeproject.org/files/ENCFF128NOD/@@download/ENCFF128NOD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF108VFC bigBed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF037TEH 10981212 ENCODE Processing Pipeline 513e3526ac73251609a3a66680fb8aa1 https://www.encodeproject.org/files/ENCFF108VFC/@@download/ENCFF108VFC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF866KWV bigBed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF087ZHG 10908366 ENCODE Processing Pipeline 759d0f540e9d7d26691d822bdd5d5004 https://www.encodeproject.org/files/ENCFF866KWV/@@download/ENCFF866KWV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF318AVP bigBed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF615GWF 10975122 ENCODE Processing Pipeline 4c04b340c019473328d6be654aa20307 https://www.encodeproject.org/files/ENCFF318AVP/@@download/ENCFF318AVP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF059WVE bed narrowPeak optimal idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF037TEH, ENCFF087ZHG, ENCFF128NOD 3792 ENCODE Processing Pipeline c8eb54c4d7c2c6737f7bfd9b2edb9df1 https://www.encodeproject.org/files/ENCFF059WVE/@@download/ENCFF059WVE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF615GWF bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF102RVF, ENCFF440PPR 4566299 ENCODE Processing Pipeline 94889ae5ebeb529e942cd4cbdb47bae2 https://www.encodeproject.org/files/ENCFF615GWF/@@download/ENCFF615GWF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF584SCO bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF102RVF, ENCFF438FAN, ENCFF440PPR, ENCFF572MUD 5834074 ENCODE Processing Pipeline 65d7e4b2ede57f15b31f432d844bbd29 https://www.encodeproject.org/files/ENCFF584SCO/@@download/ENCFF584SCO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF020OIR bigWig fold change over control ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF720XTH, ENCFF922JGL 291817292 ENCODE Processing Pipeline 0852f43ca8c6b538e7e063c8b2de1db8 https://www.encodeproject.org/files/ENCFF020OIR/@@download/ENCFF020OIR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF037TEH bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF600TNX, ENCFF851QFR 4712573 ENCODE Processing Pipeline 413e4b43f19533fd13950fe6e55cbefb https://www.encodeproject.org/files/ENCFF037TEH/@@download/ENCFF037TEH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF087ZHG bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF720XTH, ENCFF922JGL 4742599 ENCODE Processing Pipeline 961998556f5c583d5de4ee3724b5d690 https://www.encodeproject.org/files/ENCFF087ZHG/@@download/ENCFF087ZHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF295KEI bed narrowPeak conservative idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF037TEH, ENCFF087ZHG, ENCFF128NOD 3296 ENCODE Processing Pipeline 28ebd8fe23ddb1b44088609908879ade https://www.encodeproject.org/files/ENCFF295KEI/@@download/ENCFF295KEI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF797YXH bigBed narrowPeak conservative idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF295KEI 78866 ENCODE Processing Pipeline c3f0e913031cd2da8d3b531b236af21c https://www.encodeproject.org/files/ENCFF797YXH/@@download/ENCFF797YXH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF560KJC bigBed narrowPeak optimal idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF059WVE 56811 ENCODE Processing Pipeline e23c0eafd1e3c70889497a9451719bbb https://www.encodeproject.org/files/ENCFF560KJC/@@download/ENCFF560KJC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF429IRH bigBed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF584SCO 11428001 ENCODE Processing Pipeline 6e4fa23f1fc8ec8820d88c90044a855a https://www.encodeproject.org/files/ENCFF429IRH/@@download/ENCFF429IRH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF774NSL bigWig signal p-value ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF102RVF, ENCFF438FAN, ENCFF440PPR, ENCFF572MUD 897468461 ENCODE Processing Pipeline 9dba44026adef2203e2696782cd3a123 https://www.encodeproject.org/files/ENCFF774NSL/@@download/ENCFF774NSL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF129NIH bigWig fold change over control ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF102RVF, ENCFF438FAN, ENCFF440PPR, ENCFF572MUD 800368188 ENCODE Processing Pipeline 1d8625467d1a88dd3296e83cff45553f https://www.encodeproject.org/files/ENCFF129NIH/@@download/ENCFF129NIH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF464HMJ bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF438FAN, ENCFF572MUD 4693901 ENCODE Processing Pipeline 4bb9ce8faf21c4781e0c097edc45d4dc https://www.encodeproject.org/files/ENCFF464HMJ/@@download/ENCFF464HMJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF397XSH bigWig fold change over control ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF438FAN, ENCFF572MUD 305673191 ENCODE Processing Pipeline 264b02ea7da8c2e736262f4abc9dc8fa https://www.encodeproject.org/files/ENCFF397XSH/@@download/ENCFF397XSH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF973ITD bed narrowPeak conservative idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF464HMJ, ENCFF584SCO, ENCFF615GWF 3650 ENCODE Processing Pipeline bc5485ff2d3898c1cd2b74a35d9b0a72 https://www.encodeproject.org/files/ENCFF973ITD/@@download/ENCFF973ITD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF168ZCS bigBed narrowPeak conservative idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF973ITD 88262 ENCODE Processing Pipeline 03b8cb4c6eb6db189e3641bc3e2c22ef https://www.encodeproject.org/files/ENCFF168ZCS/@@download/ENCFF168ZCS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF589UQA bigBed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF464HMJ 10923955 ENCODE Processing Pipeline 574cd7ec4c0e197dc01c4d2415f36045 https://www.encodeproject.org/files/ENCFF589UQA/@@download/ENCFF589UQA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF550VUN bed narrowPeak optimal idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF464HMJ, ENCFF584SCO, ENCFF615GWF 5162 ENCODE Processing Pipeline 22be748c7ce99137b1a2334377921a91 https://www.encodeproject.org/files/ENCFF550VUN/@@download/ENCFF550VUN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF101IEH bigBed narrowPeak optimal idr thresholded peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF550VUN 60004 ENCODE Processing Pipeline 39512148a0e81a683a688e3a5a0377e2 https://www.encodeproject.org/files/ENCFF101IEH/@@download/ENCFF101IEH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF771EYZ bam unfiltered alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF161FHO, ENCFF807MUK 811807466 ENCODE Processing Pipeline a79c13983e06d60fa9a295efb9086d18 https://www.encodeproject.org/files/ENCFF771EYZ/@@download/ENCFF771EYZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF401QBU bam unfiltered alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF127HYV, ENCFF807MUK 661108605 ENCODE Processing Pipeline 94c1e1bef6b624cf6bc3a353f8b4fb7c https://www.encodeproject.org/files/ENCFF401QBU/@@download/ENCFF401QBU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF042UPV bam unfiltered alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF690UNT, ENCFF807MUK 989306640 ENCODE Processing Pipeline c10688fcb9f0b715437a5f81e7bd2b4d https://www.encodeproject.org/files/ENCFF042UPV/@@download/ENCFF042UPV.bam hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF640FGQ bam unfiltered alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF707YEY, ENCFF807MUK 1329886627 ENCODE Processing Pipeline 613bab6188f0bc44da9fd57f25967c83 https://www.encodeproject.org/files/ENCFF640FGQ/@@download/ENCFF640FGQ.bam hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF707YEY fastq reads ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1197363446 Richard Myers, HAIB 54fb36174eb9adff002d3c232bbebc38 SRA:SRR5338695 https://www.encodeproject.org/files/ENCFF707YEY/@@download/ENCFF707YEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF690UNT fastq reads ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 889716012 Richard Myers, HAIB 390aaef09d878a74c0b770281b2273d2 SRA:SRR5338696 https://www.encodeproject.org/files/ENCFF690UNT/@@download/ENCFF690UNT.fastq.gz Illumina HiSeq 2000 /files/ENCFF434SPH/ released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF352OYX bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF707YEY, ENCFF807MUK 1023716075 ENCODE Processing Pipeline ed60c5d9d6efc627e9cc39fbc261d2fe https://www.encodeproject.org/files/ENCFF352OYX/@@download/ENCFF352OYX.bam hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF069NTQ bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF690UNT, ENCFF807MUK 756925775 ENCODE Processing Pipeline 7f41d85f8de80becef44fd328366101f https://www.encodeproject.org/files/ENCFF069NTQ/@@download/ENCFF069NTQ.bam hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF182LOA bigWig signal p-value ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF352OYX 446321873 ENCODE Processing Pipeline c42eedd8fa3ea6dfaae39a8764f20df9 https://www.encodeproject.org/files/ENCFF182LOA/@@download/ENCFF182LOA.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF732UOQ bigWig signal p-value ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF069NTQ, ENCFF352OYX 424030130 ENCODE Processing Pipeline 29da6a782e1b89c9ee5d5a4b4493fd18 https://www.encodeproject.org/files/ENCFF732UOQ/@@download/ENCFF732UOQ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF187BTJ bigWig fold change over control ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF069NTQ 325504982 ENCODE Processing Pipeline 8f21023ab408a3bfda4c395792303200 https://www.encodeproject.org/files/ENCFF187BTJ/@@download/ENCFF187BTJ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF176TOU bigWig fold change over control ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF069NTQ, ENCFF352OYX 648501781 ENCODE Processing Pipeline ab1a52a21c688086a75edac31f5585b8 https://www.encodeproject.org/files/ENCFF176TOU/@@download/ENCFF176TOU.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF209UJF bigWig signal p-value ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF069NTQ 425657505 ENCODE Processing Pipeline c77d49bf15377c8195d805f760bc2d50 https://www.encodeproject.org/files/ENCFF209UJF/@@download/ENCFF209UJF.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF775VAP bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF352OYX 6212491 ENCODE Processing Pipeline 8196829fa410b15e8c254dff080cfe10 https://www.encodeproject.org/files/ENCFF775VAP/@@download/ENCFF775VAP.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF935PRS bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023YTY, ENCFF069NTQ, ENCFF352OYX 6943622 ENCODE Processing Pipeline fd47e29ec66dbe683c284f15d578f8e7 https://www.encodeproject.org/files/ENCFF935PRS/@@download/ENCFF935PRS.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF712NGV bigWig fold change over control ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF352OYX 410316631 ENCODE Processing Pipeline b6e264d899e701f96ec235861c132502 https://www.encodeproject.org/files/ENCFF712NGV/@@download/ENCFF712NGV.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF151CJE bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF069NTQ 6233914 ENCODE Processing Pipeline efc1bdb15baed8bec34c5f06ea5db5be https://www.encodeproject.org/files/ENCFF151CJE/@@download/ENCFF151CJE.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF163MMS bigBed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF151CJE 12885878 ENCODE Processing Pipeline 4c7461c734d2104bc7db79ca68e73f7a https://www.encodeproject.org/files/ENCFF163MMS/@@download/ENCFF163MMS.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF505CJK bigBed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF935PRS 12801493 ENCODE Processing Pipeline 4630d3c0436e08cff6d07d7885dc63bc https://www.encodeproject.org/files/ENCFF505CJK/@@download/ENCFF505CJK.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF880NBS bigBed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF775VAP 12933831 ENCODE Processing Pipeline a149ad90604072286b30d99d49d233fe https://www.encodeproject.org/files/ENCFF880NBS/@@download/ENCFF880NBS.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF837HCH bed narrowPeak optimal idr thresholded peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF151CJE, ENCFF775VAP, ENCFF935PRS 199892 ENCODE Processing Pipeline 612b5357f838579f884e20cfc9b356d4 https://www.encodeproject.org/files/ENCFF837HCH/@@download/ENCFF837HCH.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF719SXS bigBed narrowPeak optimal idr thresholded peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF837HCH 442819 ENCODE Processing Pipeline 211e96fed9f19b75c56a8fe0655dfd1c https://www.encodeproject.org/files/ENCFF719SXS/@@download/ENCFF719SXS.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF249FGE bam unfiltered alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF643CGH, ENCFF690UNT 992565150 ENCODE Processing Pipeline 9b0c54e3469e46fb7af5b29cdce36191 https://www.encodeproject.org/files/ENCFF249FGE/@@download/ENCFF249FGE.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF915XNP bam unfiltered alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF707YEY 1334555087 ENCODE Processing Pipeline c1c87e2c482b8d399158b6742c803100 https://www.encodeproject.org/files/ENCFF915XNP/@@download/ENCFF915XNP.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF615LVR bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF643CGH, ENCFF690UNT 756800422 ENCODE Processing Pipeline 16bbd4de275c304010b5761499dc233d https://www.encodeproject.org/files/ENCFF615LVR/@@download/ENCFF615LVR.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF056OXH bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF707YEY 1023651194 ENCODE Processing Pipeline 9b9eb61b5a9bf0a00ad2dc080da68712 https://www.encodeproject.org/files/ENCFF056OXH/@@download/ENCFF056OXH.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF520CHU bigWig signal p-value ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF056OXH, ENCFF582CVJ 449471313 ENCODE Processing Pipeline 77568279e1a6378d0722a803b1cf054c https://www.encodeproject.org/files/ENCFF520CHU/@@download/ENCFF520CHU.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF575KND bigWig signal p-value ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF615LVR 366259508 ENCODE Processing Pipeline 7708e942de5e17f036679cd61a10fe38 https://www.encodeproject.org/files/ENCFF575KND/@@download/ENCFF575KND.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF401IJL bigWig signal p-value ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF056OXH, ENCFF582CVJ, ENCFF615LVR 436957568 ENCODE Processing Pipeline ebbabc89751ed5b97629d3fc88f90fd1 https://www.encodeproject.org/files/ENCFF401IJL/@@download/ENCFF401IJL.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF156PYW bigWig fold change over control ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF056OXH, ENCFF582CVJ 418677774 ENCODE Processing Pipeline bba3fde37db7f3e953170242605d715f https://www.encodeproject.org/files/ENCFF156PYW/@@download/ENCFF156PYW.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF831DBN bigWig fold change over control ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF615LVR 322218609 ENCODE Processing Pipeline 1e227122586f1a7a8278b7804709ab87 https://www.encodeproject.org/files/ENCFF831DBN/@@download/ENCFF831DBN.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF883ZNP bigWig fold change over control ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF056OXH, ENCFF582CVJ, ENCFF615LVR 660235030 ENCODE Processing Pipeline fbe99da1b5fc39d72c59456e11236dfc https://www.encodeproject.org/files/ENCFF883ZNP/@@download/ENCFF883ZNP.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF486YML bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF056OXH, ENCFF582CVJ 5981301 ENCODE Processing Pipeline f6b958c27d30c38fc998474cbb93cbe6 https://www.encodeproject.org/files/ENCFF486YML/@@download/ENCFF486YML.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF722VYE bigBed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF486YML 12921232 ENCODE Processing Pipeline c878c14764d9326d006de02e331132ef https://www.encodeproject.org/files/ENCFF722VYE/@@download/ENCFF722VYE.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF198PJR bigBed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF587LPA 12846694 ENCODE Processing Pipeline 74f6f59aee609ff478f7ed4f62be5959 https://www.encodeproject.org/files/ENCFF198PJR/@@download/ENCFF198PJR.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF587LPA bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF582CVJ, ENCFF615LVR 5929131 ENCODE Processing Pipeline f9e9e4a5ba93d322d7bd5a2beed77e7b https://www.encodeproject.org/files/ENCFF587LPA/@@download/ENCFF587LPA.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF446OZF bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF056OXH, ENCFF582CVJ, ENCFF615LVR 6804947 ENCODE Processing Pipeline b5c65c336dad6eace5b2a39da777eaf4 https://www.encodeproject.org/files/ENCFF446OZF/@@download/ENCFF446OZF.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF515DUD bed narrowPeak optimal idr thresholded peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF446OZF, ENCFF486YML, ENCFF587LPA 203461 ENCODE Processing Pipeline 26760894aa3b4e6921f5ef6f075c235f https://www.encodeproject.org/files/ENCFF515DUD/@@download/ENCFF515DUD.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF638KXW bigBed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF446OZF 12805220 ENCODE Processing Pipeline 6be28d6ee0451220cb15359950cb1c6c https://www.encodeproject.org/files/ENCFF638KXW/@@download/ENCFF638KXW.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF096ZRI bigBed narrowPeak optimal idr thresholded peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF515DUD 449119 ENCODE Processing Pipeline 50f3a6f064f13081aa67b26731b9adbf https://www.encodeproject.org/files/ENCFF096ZRI/@@download/ENCFF096ZRI.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF246TXB bam unfiltered alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 100 ENCFF103BRX, ENCFF643QTB, ENCFF807MUK 6119145751 ENCODE Processing Pipeline ed5f6d0093a419a73df350c3f69264b1 https://www.encodeproject.org/files/ENCFF246TXB/@@download/ENCFF246TXB.bam hg19 released mild to moderate bottlenecking ENCFF453DPF bam unfiltered alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 100 ENCFF211HML, ENCFF238ZLM, ENCFF807MUK 6743955598 ENCODE Processing Pipeline 0800928aba3eafb1064688c7dd0b2027 https://www.encodeproject.org/files/ENCFF453DPF/@@download/ENCFF453DPF.bam hg19 released mild to moderate bottlenecking ENCFF643QTB fastq reads ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 1 100 paired-ended 1 ENCFF103BRX 2881727182 Michael Snyder, Stanford 423e3b1305b634e216fc8d99654e85af SRA:SRR5111450 https://www.encodeproject.org/files/ENCFF643QTB/@@download/ENCFF643QTB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF103BRX fastq reads ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 1 100 paired-ended 2 ENCFF643QTB 2916448783 Michael Snyder, Stanford 2b0105499c62470e5d9f952d3f85c63a SRA:SRR5111450 https://www.encodeproject.org/files/ENCFF103BRX/@@download/ENCFF103BRX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF238ZLM fastq reads ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 1 100 paired-ended 2 ENCFF211HML 3260929120 Michael Snyder, Stanford 87e801a4f46eaf9b8e46c65118aed5cc SRA:SRR5111451 https://www.encodeproject.org/files/ENCFF238ZLM/@@download/ENCFF238ZLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF211HML fastq reads ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 1 100 paired-ended 1 ENCFF238ZLM 3255722435 Michael Snyder, Stanford c5a5779e83814b1564baa4aebdb63e1e SRA:SRR5111451 https://www.encodeproject.org/files/ENCFF211HML/@@download/ENCFF211HML.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF928QMZ bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 100 ENCFF103BRX, ENCFF643QTB, ENCFF807MUK 4918527323 ENCODE Processing Pipeline 6b8e971b6ef311f9090ccb4570bbbe24 https://www.encodeproject.org/files/ENCFF928QMZ/@@download/ENCFF928QMZ.bam hg19 released mild to moderate bottlenecking ENCFF550WAC bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 100 ENCFF211HML, ENCFF238ZLM, ENCFF807MUK 5183070486 ENCODE Processing Pipeline 6d82c59db6318be7e0944ec7adcce6d1 https://www.encodeproject.org/files/ENCFF550WAC/@@download/ENCFF550WAC.bam hg19 released mild to moderate bottlenecking ENCFF088AMO bigWig fold change over control ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF550WAC, ENCFF581ZJL 1312838113 ENCODE Processing Pipeline ee8066893bba5950de8d7ec110f49978 https://www.encodeproject.org/files/ENCFF088AMO/@@download/ENCFF088AMO.bigWig hg19 released mild to moderate bottlenecking ENCFF715TQB bigWig fold change over control ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF051LWI, ENCFF928QMZ 1249869019 ENCODE Processing Pipeline 697df00b072f2984067a47648c8dd73a https://www.encodeproject.org/files/ENCFF715TQB/@@download/ENCFF715TQB.bigWig hg19 released mild to moderate bottlenecking ENCFF506NOD bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF051LWI, ENCFF550WAC, ENCFF581ZJL, ENCFF928QMZ 7275360 ENCODE Processing Pipeline c178623e46132c76c087e31697e4ed93 https://www.encodeproject.org/files/ENCFF506NOD/@@download/ENCFF506NOD.bed.gz hg19 released mild to moderate bottlenecking ENCFF358NWG bigBed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF857NTV 13246618 ENCODE Processing Pipeline 0788cb6f8f112dbd89fc97ad1c25fdb2 https://www.encodeproject.org/files/ENCFF358NWG/@@download/ENCFF358NWG.bigBed hg19 released mild to moderate bottlenecking ENCFF951FXR bigWig signal p-value ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF051LWI, ENCFF928QMZ 1093921459 ENCODE Processing Pipeline ef95295771da1b21df03c5eaff98dec7 https://www.encodeproject.org/files/ENCFF951FXR/@@download/ENCFF951FXR.bigWig hg19 released mild to moderate bottlenecking ENCFF945VLV bigWig signal p-value ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF051LWI, ENCFF550WAC, ENCFF581ZJL, ENCFF928QMZ 1818063359 ENCODE Processing Pipeline a7c2ebf282f3e3b4a68b72d89ccb8bc9 https://www.encodeproject.org/files/ENCFF945VLV/@@download/ENCFF945VLV.bigWig hg19 released mild to moderate bottlenecking ENCFF022TEE bigBed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF421AHE 13216790 ENCODE Processing Pipeline 93d99cebb9b89647c5a02c4f51db9313 https://www.encodeproject.org/files/ENCFF022TEE/@@download/ENCFF022TEE.bigBed hg19 released mild to moderate bottlenecking ENCFF857NTV bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF550WAC, ENCFF581ZJL 6990705 ENCODE Processing Pipeline 617eaae881c4775bf7fd5dc6206f45ee https://www.encodeproject.org/files/ENCFF857NTV/@@download/ENCFF857NTV.bed.gz hg19 released mild to moderate bottlenecking ENCFF451XLA bigBed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF506NOD 13065332 ENCODE Processing Pipeline 5895f0b0a0f6dfd3752c993d25129e6b https://www.encodeproject.org/files/ENCFF451XLA/@@download/ENCFF451XLA.bigBed hg19 released mild to moderate bottlenecking ENCFF421AHE bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF051LWI, ENCFF928QMZ 6940783 ENCODE Processing Pipeline d9a685d1a9a7318f8cf381bc3d015eae https://www.encodeproject.org/files/ENCFF421AHE/@@download/ENCFF421AHE.bed.gz hg19 released mild to moderate bottlenecking ENCFF679QYF bigWig signal p-value ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF550WAC, ENCFF581ZJL 1097359367 ENCODE Processing Pipeline d6b522ca1dc74d8cbabc9b557e7643d4 https://www.encodeproject.org/files/ENCFF679QYF/@@download/ENCFF679QYF.bigWig hg19 released mild to moderate bottlenecking ENCFF766KPI bigWig fold change over control ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF051LWI, ENCFF550WAC, ENCFF581ZJL, ENCFF928QMZ 2232446246 ENCODE Processing Pipeline 55f4bd385d16ff4095f45a9317b72369 https://www.encodeproject.org/files/ENCFF766KPI/@@download/ENCFF766KPI.bigWig hg19 released mild to moderate bottlenecking ENCFF994AZS bam unfiltered alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 100 ENCFF103BRX, ENCFF643CGH, ENCFF643QTB 6124062550 ENCODE Processing Pipeline cf2cae4779fb66af217142ea05b46c95 https://www.encodeproject.org/files/ENCFF994AZS/@@download/ENCFF994AZS.bam GRCh38 released mild to moderate bottlenecking ENCFF442IUC bam unfiltered alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 100 ENCFF211HML, ENCFF238ZLM, ENCFF643CGH 6748012737 ENCODE Processing Pipeline fc567df98f4ff3f779baad07fe50818b https://www.encodeproject.org/files/ENCFF442IUC/@@download/ENCFF442IUC.bam GRCh38 released mild to moderate bottlenecking ENCFF933HFV bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 100 ENCFF103BRX, ENCFF643CGH, ENCFF643QTB 4920981163 ENCODE Processing Pipeline b413a0890b957e0dfa863ddc017a6a7a https://www.encodeproject.org/files/ENCFF933HFV/@@download/ENCFF933HFV.bam GRCh38 released mild to moderate bottlenecking ENCFF178YFO bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 100 ENCFF211HML, ENCFF238ZLM, ENCFF643CGH 5185367825 ENCODE Processing Pipeline bb59f5e2e1695f38a5e0097f10d91fa5 https://www.encodeproject.org/files/ENCFF178YFO/@@download/ENCFF178YFO.bam GRCh38 released mild to moderate bottlenecking ENCFF848SNB bigWig signal p-value ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF178YFO, ENCFF910IKB 1208274983 ENCODE Processing Pipeline 7ba2317150362d375e385752249e16ae https://www.encodeproject.org/files/ENCFF848SNB/@@download/ENCFF848SNB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF007GQT bigWig signal p-value ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF227IZS, ENCFF933HFV 1270866133 ENCODE Processing Pipeline f1ab5ab9f44131ae9cf78f8be954e1ea https://www.encodeproject.org/files/ENCFF007GQT/@@download/ENCFF007GQT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF725BUU bigWig signal p-value ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF178YFO, ENCFF227IZS, ENCFF910IKB, ENCFF933HFV 1922787101 ENCODE Processing Pipeline 282c58f8dd58b9a3fef58416f265090e https://www.encodeproject.org/files/ENCFF725BUU/@@download/ENCFF725BUU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF490ANA bigWig fold change over control ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF178YFO, ENCFF910IKB 1312677006 ENCODE Processing Pipeline 1f66aa6f70c82ebcc8f2c1e5cf0c2640 https://www.encodeproject.org/files/ENCFF490ANA/@@download/ENCFF490ANA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF803LQE bigWig fold change over control ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF227IZS, ENCFF933HFV 1244147210 ENCODE Processing Pipeline deeee0f45de05f036f1e0d2abf5c3746 https://www.encodeproject.org/files/ENCFF803LQE/@@download/ENCFF803LQE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF750BPV bigWig fold change over control ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF178YFO, ENCFF227IZS, ENCFF910IKB, ENCFF933HFV 2248690793 ENCODE Processing Pipeline e35a7e1d8514cc3bacbb454a2edcf40b https://www.encodeproject.org/files/ENCFF750BPV/@@download/ENCFF750BPV.bigWig GRCh38 released mild to moderate bottlenecking ENCFF603XZK bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF178YFO, ENCFF910IKB 6927877 ENCODE Processing Pipeline 36b8c7cd13d10baceb9a58ad7471d749 https://www.encodeproject.org/files/ENCFF603XZK/@@download/ENCFF603XZK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF679IOJ bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF227IZS, ENCFF933HFV 6848573 ENCODE Processing Pipeline 42c05d61a0799d25bb3ad75159e9d20d https://www.encodeproject.org/files/ENCFF679IOJ/@@download/ENCFF679IOJ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF301GRS bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF178YFO, ENCFF227IZS, ENCFF910IKB, ENCFF933HFV 7284109 ENCODE Processing Pipeline a84ff89403f47143d927750e9c403320 https://www.encodeproject.org/files/ENCFF301GRS/@@download/ENCFF301GRS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF230TBE bigBed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 ENCFF603XZK 13262290 ENCODE Processing Pipeline 245a836475a3dc57b4547740f6ad086d https://www.encodeproject.org/files/ENCFF230TBE/@@download/ENCFF230TBE.bigBed GRCh38 released mild to moderate bottlenecking ENCFF950BIO bigBed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 ENCFF679IOJ 13221372 ENCODE Processing Pipeline a5faed96a5b1f8a79b149805c0e98faf https://www.encodeproject.org/files/ENCFF950BIO/@@download/ENCFF950BIO.bigBed GRCh38 released mild to moderate bottlenecking ENCFF732KZD bigBed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF301GRS 13084081 ENCODE Processing Pipeline 5738113a098bed8183c60fb182bf8721 https://www.encodeproject.org/files/ENCFF732KZD/@@download/ENCFF732KZD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF299RMS bed narrowPeak conservative idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF301GRS, ENCFF419RSJ, ENCFF603XZK, ENCFF679IOJ 266835 ENCODE Processing Pipeline 0fe7820c4a43c2aa9d5e35c8ef76f085 https://www.encodeproject.org/files/ENCFF299RMS/@@download/ENCFF299RMS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF726UDS bigBed narrowPeak conservative idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF299RMS 595109 ENCODE Processing Pipeline 4f0e40b18cee723e59de99c951de7ec7 https://www.encodeproject.org/files/ENCFF726UDS/@@download/ENCFF726UDS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF134HQP bed narrowPeak optimal idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF301GRS, ENCFF419RSJ, ENCFF603XZK, ENCFF679IOJ 406585 ENCODE Processing Pipeline d1c621345daf570dd43b3bae98baef6a https://www.encodeproject.org/files/ENCFF134HQP/@@download/ENCFF134HQP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF457NJM bigBed narrowPeak optimal idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF134HQP 816826 ENCODE Processing Pipeline bad83467a249905c072e05c44c449c4d https://www.encodeproject.org/files/ENCFF457NJM/@@download/ENCFF457NJM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF060EYU bigBed narrowPeak optimal idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF659WAF 576552 ENCODE Processing Pipeline 91631e89ddaf225c4dbd6861ccb48f55 https://www.encodeproject.org/files/ENCFF060EYU/@@download/ENCFF060EYU.bigBed hg19 released mild to moderate bottlenecking ENCFF595DQM bed narrowPeak conservative idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF001TDO, ENCFF421AHE, ENCFF506NOD, ENCFF857NTV 218424 ENCODE Processing Pipeline 1083898528ab82914392c5ec47f1d0a9 https://www.encodeproject.org/files/ENCFF595DQM/@@download/ENCFF595DQM.bed.gz hg19 released mild to moderate bottlenecking ENCFF659WAF bed narrowPeak optimal idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF001TDO, ENCFF421AHE, ENCFF506NOD, ENCFF857NTV 338164 ENCODE Processing Pipeline 17a9dcb21ebd4ab5fd04becd0fe896f9 https://www.encodeproject.org/files/ENCFF659WAF/@@download/ENCFF659WAF.bed.gz hg19 released mild to moderate bottlenecking ENCFF753NVN bigBed narrowPeak conservative idr thresholded peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3, 4 ENCFF595DQM 425406 ENCODE Processing Pipeline d806bbf3e3e21bb9818e9ff908c36806 https://www.encodeproject.org/files/ENCFF753NVN/@@download/ENCFF753NVN.bigBed hg19 released mild to moderate bottlenecking ENCFF961HPB fastq reads ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF150KCT 3159530377 Michael Snyder, Stanford 81c26970b13b409a39045cf49c02a45a SRA:SRR6213888 https://www.encodeproject.org/files/ENCFF961HPB/@@download/ENCFF961HPB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF148YZK fastq reads ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF839AXL 3115959620 Michael Snyder, Stanford be886f1de2ab99e5294d6d7c5a899728 SRA:SRR6213889 https://www.encodeproject.org/files/ENCFF148YZK/@@download/ENCFF148YZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF839AXL fastq reads ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF148YZK 3174125562 Michael Snyder, Stanford cdfe5964f7a7e25eee00e9fd8272155d SRA:SRR6213889 https://www.encodeproject.org/files/ENCFF839AXL/@@download/ENCFF839AXL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF150KCT fastq reads ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF961HPB 3220827591 Michael Snyder, Stanford 5929a296301271fcbdd6a2ca1777fc12 SRA:SRR6213888 https://www.encodeproject.org/files/ENCFF150KCT/@@download/ENCFF150KCT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF824IYA bam unfiltered alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF148YZK, ENCFF807MUK, ENCFF839AXL 6356809173 ENCODE Processing Pipeline a74b357e36436af02f4edbf6e3b13307 https://www.encodeproject.org/files/ENCFF824IYA/@@download/ENCFF824IYA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF377NHQ bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF148YZK, ENCFF807MUK, ENCFF839AXL 5359063638 ENCODE Processing Pipeline 8155d6e8c942e76638c53bf639fc60c2 https://www.encodeproject.org/files/ENCFF377NHQ/@@download/ENCFF377NHQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF347GPZ bam unfiltered alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF150KCT, ENCFF807MUK, ENCFF961HPB 6433438191 ENCODE Processing Pipeline 7b73cbbcf50f7a59a39653bcf6ddf13a https://www.encodeproject.org/files/ENCFF347GPZ/@@download/ENCFF347GPZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF060RLW bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF150KCT, ENCFF807MUK, ENCFF961HPB 5449406355 ENCODE Processing Pipeline 1c88b460c67aa7427b03f2edce7f975a https://www.encodeproject.org/files/ENCFF060RLW/@@download/ENCFF060RLW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF847VUP bam unfiltered alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF150KCT, ENCFF643CGH, ENCFF961HPB 6440894092 ENCODE Processing Pipeline aeb86b8cdcaa46637da0705056e9b09b https://www.encodeproject.org/files/ENCFF847VUP/@@download/ENCFF847VUP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF879GIE bam unfiltered alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF148YZK, ENCFF643CGH, ENCFF839AXL 6364741615 ENCODE Processing Pipeline 58228dbb363d766410d36692b7917af2 https://www.encodeproject.org/files/ENCFF879GIE/@@download/ENCFF879GIE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF948AXY bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF150KCT, ENCFF643CGH, ENCFF961HPB 5452672855 ENCODE Processing Pipeline 5f82b33b104d44b04c1cdb930032c0fe https://www.encodeproject.org/files/ENCFF948AXY/@@download/ENCFF948AXY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF984GJD bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF148YZK, ENCFF643CGH, ENCFF839AXL 5362977323 ENCODE Processing Pipeline d3924c36969ec177f246b8e4e388375c https://www.encodeproject.org/files/ENCFF984GJD/@@download/ENCFF984GJD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF931PJN bigWig signal p-value ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF377NHQ 1414620426 ENCODE Processing Pipeline 994a3a104477a1642eae5a568c8584fe https://www.encodeproject.org/files/ENCFF931PJN/@@download/ENCFF931PJN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF123QFV bigWig signal p-value ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF060RLW 1274313163 ENCODE Processing Pipeline d81fecc912f7669856a50ab8d660f6ec https://www.encodeproject.org/files/ENCFF123QFV/@@download/ENCFF123QFV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF347CSM bigWig signal p-value ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF060RLW, ENCFF377NHQ 1964854336 ENCODE Processing Pipeline dbb0a267c9d16414a1dfea7212305d0e https://www.encodeproject.org/files/ENCFF347CSM/@@download/ENCFF347CSM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF100NHA bigWig fold change over control ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF377NHQ 1500240211 ENCODE Processing Pipeline aea55d56a9782bbd280a029d0edcfa09 https://www.encodeproject.org/files/ENCFF100NHA/@@download/ENCFF100NHA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF061RNM bigWig fold change over control ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF060RLW 1526259137 ENCODE Processing Pipeline 52e43208a95d90cd6773cdebfd6c8bcf https://www.encodeproject.org/files/ENCFF061RNM/@@download/ENCFF061RNM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF021XYY bigWig fold change over control ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF060RLW, ENCFF377NHQ 2068078619 ENCODE Processing Pipeline 21781f7486226eeb5bd376dfee2e9903 https://www.encodeproject.org/files/ENCFF021XYY/@@download/ENCFF021XYY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF595AYG bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF060RLW 6686813 ENCODE Processing Pipeline 657235201ef9884816e5dcc2bbf8eeb3 https://www.encodeproject.org/files/ENCFF595AYG/@@download/ENCFF595AYG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF893YFR bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF377NHQ 6630300 ENCODE Processing Pipeline e4c23c1960c5d24fe0823ad4e798a870 https://www.encodeproject.org/files/ENCFF893YFR/@@download/ENCFF893YFR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF140DBO bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF060RLW, ENCFF377NHQ 7115387 ENCODE Processing Pipeline b5c304699dfe238995c1aa4f621f96c5 https://www.encodeproject.org/files/ENCFF140DBO/@@download/ENCFF140DBO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF135NTH bigBed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF893YFR 11034238 ENCODE Processing Pipeline f15a05eeb3c91a58cc927a7635a7cf67 https://www.encodeproject.org/files/ENCFF135NTH/@@download/ENCFF135NTH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF667AEK bed narrowPeak optimal idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF140DBO, ENCFF595AYG, ENCFF893YFR 28413 ENCODE Processing Pipeline 141b6c8e80ee2e52077ab46122838487 https://www.encodeproject.org/files/ENCFF667AEK/@@download/ENCFF667AEK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF651EFI bigBed narrowPeak conservative idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF754CVA 85336 ENCODE Processing Pipeline bdad55ac6a48eb983d2810290ca2c0e4 https://www.encodeproject.org/files/ENCFF651EFI/@@download/ENCFF651EFI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF987RBB bigBed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF140DBO 10771903 ENCODE Processing Pipeline 09940f7828bafbbd6fefb8d96bdce3f0 https://www.encodeproject.org/files/ENCFF987RBB/@@download/ENCFF987RBB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF999RHC bigBed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF595AYG 11012190 ENCODE Processing Pipeline 3c96eb5da5b920cb499c29f4b5401e91 https://www.encodeproject.org/files/ENCFF999RHC/@@download/ENCFF999RHC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF754CVA bed narrowPeak conservative idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF140DBO, ENCFF595AYG, ENCFF893YFR 14791 ENCODE Processing Pipeline eb4e64f577e2be1136e8033e46639776 https://www.encodeproject.org/files/ENCFF754CVA/@@download/ENCFF754CVA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF046AFY bigBed narrowPeak optimal idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF667AEK 109186 ENCODE Processing Pipeline f8846daadd6b9893daefd3b19aec67f7 https://www.encodeproject.org/files/ENCFF046AFY/@@download/ENCFF046AFY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF112ZVL bigWig signal p-value ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF984GJD 1377014821 ENCODE Processing Pipeline 52fb1fc0c2ebfc99c810811763788f50 https://www.encodeproject.org/files/ENCFF112ZVL/@@download/ENCFF112ZVL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF525EVM bigWig signal p-value ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF948AXY 1462284268 ENCODE Processing Pipeline 5b5816521aca2a4198a63d1753a1d9f9 https://www.encodeproject.org/files/ENCFF525EVM/@@download/ENCFF525EVM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF780LFL bigWig signal p-value ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF948AXY, ENCFF984GJD 1987626487 ENCODE Processing Pipeline 67fa75a5d5bf0dd0937bebd1321e7cf5 https://www.encodeproject.org/files/ENCFF780LFL/@@download/ENCFF780LFL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF289PJM bigWig fold change over control ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF984GJD 1511565023 ENCODE Processing Pipeline 72156cb60a5cf2d894d94fc7c660adaf https://www.encodeproject.org/files/ENCFF289PJM/@@download/ENCFF289PJM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF488XHD bigWig fold change over control ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF948AXY 1533193199 ENCODE Processing Pipeline b78f19a52df32902c2ae2542f19b4b8c https://www.encodeproject.org/files/ENCFF488XHD/@@download/ENCFF488XHD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF988KQC bigWig fold change over control ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF948AXY, ENCFF984GJD 2084125088 ENCODE Processing Pipeline fc32bb82d6975cecbfe7021750d892c7 https://www.encodeproject.org/files/ENCFF988KQC/@@download/ENCFF988KQC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF254WHC bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF948AXY 6692311 ENCODE Processing Pipeline 5e05427713c842afc82dbf9c7b73a38a https://www.encodeproject.org/files/ENCFF254WHC/@@download/ENCFF254WHC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF374AFB bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF948AXY, ENCFF984GJD 7120881 ENCODE Processing Pipeline 6fdc9c1d57b1101fa5fe3dd8f83f498f https://www.encodeproject.org/files/ENCFF374AFB/@@download/ENCFF374AFB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF934AUQ bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF984GJD 6634190 ENCODE Processing Pipeline bb7139a97499a64d9dc6409320b5afdc https://www.encodeproject.org/files/ENCFF934AUQ/@@download/ENCFF934AUQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF931YAE bigBed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF934AUQ 11045546 ENCODE Processing Pipeline 3934771de80e61acf0564eac74012f49 https://www.encodeproject.org/files/ENCFF931YAE/@@download/ENCFF931YAE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF812NWS bigBed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF254WHC 11028884 ENCODE Processing Pipeline b5b86f5640b838508d8aeff126eda17d https://www.encodeproject.org/files/ENCFF812NWS/@@download/ENCFF812NWS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF347RZW bed narrowPeak conservative idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF254WHC, ENCFF374AFB, ENCFF419RSJ, ENCFF934AUQ 16165 ENCODE Processing Pipeline 6d8a4046f3ecabc97b31a1668f261354 https://www.encodeproject.org/files/ENCFF347RZW/@@download/ENCFF347RZW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF310IVU bigBed narrowPeak conservative idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF347RZW 89379 ENCODE Processing Pipeline dffe6ab74b74998381c54bdfd454393c https://www.encodeproject.org/files/ENCFF310IVU/@@download/ENCFF310IVU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF095RQN bigBed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF374AFB 10789022 ENCODE Processing Pipeline 12b4229c3e42ea6b541c08d4f3da4487 https://www.encodeproject.org/files/ENCFF095RQN/@@download/ENCFF095RQN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF930JJO bigBed narrowPeak optimal idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF029DNH 113922 ENCODE Processing Pipeline 34f132dbdb7a9d075242a32f5f37388e https://www.encodeproject.org/files/ENCFF930JJO/@@download/ENCFF930JJO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF029DNH bed narrowPeak optimal idr thresholded peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF254WHC, ENCFF374AFB, ENCFF419RSJ, ENCFF934AUQ 30248 ENCODE Processing Pipeline 4c641a9abc56ca275b06e7d131b67bf0 https://www.encodeproject.org/files/ENCFF029DNH/@@download/ENCFF029DNH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF691EHP fastq reads ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF246IMR 4096275253 Michael Snyder, Stanford 9a39aaccf0787acd32e8b0f995f2f2a0 SRA:SRR5111109 https://www.encodeproject.org/files/ENCFF691EHP/@@download/ENCFF691EHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF110KHM fastq reads ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF861XPL 3274976082 Michael Snyder, Stanford 92d066b2c548d2d5ea5254d5a0fc79ef SRA:SRR5111108 https://www.encodeproject.org/files/ENCFF110KHM/@@download/ENCFF110KHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF246IMR fastq reads ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF691EHP 4130088176 Michael Snyder, Stanford 8d81cf0a0b1767a15ae05fcb0789e753 SRA:SRR5111109 https://www.encodeproject.org/files/ENCFF246IMR/@@download/ENCFF246IMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF861XPL fastq reads ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF110KHM 3312984883 Michael Snyder, Stanford a3f62f4a8f7cdd22a432b2f4f021e680 SRA:SRR5111108 https://www.encodeproject.org/files/ENCFF861XPL/@@download/ENCFF861XPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF927AFN bam unfiltered alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF110KHM, ENCFF643CGH, ENCFF861XPL 7179331695 ENCODE Processing Pipeline 20477ca65789af956aa7c36d10e7c108 https://www.encodeproject.org/files/ENCFF927AFN/@@download/ENCFF927AFN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF089TJQ bam unfiltered alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF110KHM, ENCFF807MUK, ENCFF861XPL 7169887351 ENCODE Processing Pipeline ef8fadce58ea1c0d8d326ddc9acc895e https://www.encodeproject.org/files/ENCFF089TJQ/@@download/ENCFF089TJQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF409YKN bam unfiltered alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246IMR, ENCFF643CGH, ENCFF691EHP 8851244621 ENCODE Processing Pipeline 92b219697aa898abf7c2416e323e2179 https://www.encodeproject.org/files/ENCFF409YKN/@@download/ENCFF409YKN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF170HCT bam unfiltered alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246IMR, ENCFF691EHP, ENCFF807MUK 8839884496 ENCODE Processing Pipeline 1c6d20a58479dc6c06bfcdecb68bdf73 https://www.encodeproject.org/files/ENCFF170HCT/@@download/ENCFF170HCT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF126ZGI bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF110KHM, ENCFF643CGH, ENCFF861XPL 6062743710 ENCODE Processing Pipeline 08711de35ae04f3d9392a7e699c2fe84 https://www.encodeproject.org/files/ENCFF126ZGI/@@download/ENCFF126ZGI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF847CAU bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF110KHM, ENCFF807MUK, ENCFF861XPL 6057518590 ENCODE Processing Pipeline 642480c71ab8dfbfdd9fc3a309f9e7a1 https://www.encodeproject.org/files/ENCFF847CAU/@@download/ENCFF847CAU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF180VNC bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246IMR, ENCFF691EHP, ENCFF807MUK 7401355686 ENCODE Processing Pipeline 5421e5cf7c832ba4b4d91302121b82da https://www.encodeproject.org/files/ENCFF180VNC/@@download/ENCFF180VNC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF822FAY bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246IMR, ENCFF643CGH, ENCFF691EHP 7408315123 ENCODE Processing Pipeline 1e90ba285cdef60ac9fe8ef178c2f765 https://www.encodeproject.org/files/ENCFF822FAY/@@download/ENCFF822FAY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF342HJH bigWig signal p-value ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF180VNC 1552412371 ENCODE Processing Pipeline 1331af3fb007b5ecc8240d59d249ab0b https://www.encodeproject.org/files/ENCFF342HJH/@@download/ENCFF342HJH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF532DUI bigWig signal p-value ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF847CAU 1405839526 ENCODE Processing Pipeline d63f85ff655f00ea8a6dffb020e8e175 https://www.encodeproject.org/files/ENCFF532DUI/@@download/ENCFF532DUI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF014LFE bigWig signal p-value ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF180VNC, ENCFF847CAU 1956079788 ENCODE Processing Pipeline 83f89d90c4d15b2c3aac26824a986cec https://www.encodeproject.org/files/ENCFF014LFE/@@download/ENCFF014LFE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF900EXL bigWig fold change over control ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF180VNC 1783948743 ENCODE Processing Pipeline 7b1a8e9a40c9ca521e53a5ba3d7f9935 https://www.encodeproject.org/files/ENCFF900EXL/@@download/ENCFF900EXL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF538UEL bigWig fold change over control ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF847CAU 1563201052 ENCODE Processing Pipeline fa510489516d26b76ef0fccbcd56813b https://www.encodeproject.org/files/ENCFF538UEL/@@download/ENCFF538UEL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF058ING bigWig fold change over control ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF180VNC, ENCFF847CAU 2297074657 ENCODE Processing Pipeline 35eeffc379cc23cc2780bcce4ce63fc0 https://www.encodeproject.org/files/ENCFF058ING/@@download/ENCFF058ING.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF890GNM bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF180VNC 7254930 ENCODE Processing Pipeline ee8067746a09f6446f2355f2cdabd840 https://www.encodeproject.org/files/ENCFF890GNM/@@download/ENCFF890GNM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF425TQN bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF847CAU 7194910 ENCODE Processing Pipeline 54501a8fe8f39598257532bd91333c5d https://www.encodeproject.org/files/ENCFF425TQN/@@download/ENCFF425TQN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF861YYQ bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF180VNC, ENCFF847CAU 7304230 ENCODE Processing Pipeline a31c8af13f66d990d957b2a32a0b0386 https://www.encodeproject.org/files/ENCFF861YYQ/@@download/ENCFF861YYQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF979KLV bigBed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF890GNM 13487692 ENCODE Processing Pipeline d6b9cf76405ac87ab2fdffcd6fb367fd https://www.encodeproject.org/files/ENCFF979KLV/@@download/ENCFF979KLV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF712OWQ bigBed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF425TQN 13442229 ENCODE Processing Pipeline 12a0c7133307c79c2bc8ac563732f1d0 https://www.encodeproject.org/files/ENCFF712OWQ/@@download/ENCFF712OWQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF385GGA bigBed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF861YYQ 13522244 ENCODE Processing Pipeline 65dc4dfb41df340c0d2ce4d343b7e1da https://www.encodeproject.org/files/ENCFF385GGA/@@download/ENCFF385GGA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF136QPN bed narrowPeak conservative idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF425TQN, ENCFF861YYQ, ENCFF890GNM 840047 ENCODE Processing Pipeline 35c6e555282e9dc2bd04ecd29a9f146b https://www.encodeproject.org/files/ENCFF136QPN/@@download/ENCFF136QPN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF520ZTG bigBed narrowPeak conservative idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF136QPN 1592882 ENCODE Processing Pipeline f278127f908e6e8f9826de30e91f950c https://www.encodeproject.org/files/ENCFF520ZTG/@@download/ENCFF520ZTG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF768SBV bed narrowPeak optimal idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF425TQN, ENCFF861YYQ, ENCFF890GNM 948096 ENCODE Processing Pipeline 999edc5d4734e677035c726ccef747d5 https://www.encodeproject.org/files/ENCFF768SBV/@@download/ENCFF768SBV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF131KYY bigBed narrowPeak optimal idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF768SBV 1755325 ENCODE Processing Pipeline bfcf22c39952d775e37e4243d2f54b5f https://www.encodeproject.org/files/ENCFF131KYY/@@download/ENCFF131KYY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF535SRT bigBed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF418YGE 13505613 ENCODE Processing Pipeline 4a16d9b1d948f76de03a8ce498437e78 https://www.encodeproject.org/files/ENCFF535SRT/@@download/ENCFF535SRT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF633TGX bigBed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF970XCX 13443312 ENCODE Processing Pipeline c42bf1a110b02f142470227c7cc2c0af https://www.encodeproject.org/files/ENCFF633TGX/@@download/ENCFF633TGX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF015LQI bigWig fold change over control ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF822FAY 1727960940 ENCODE Processing Pipeline a3e27aa9cf6e0e63b14023a27609bbc9 https://www.encodeproject.org/files/ENCFF015LQI/@@download/ENCFF015LQI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF418YGE bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF822FAY 7241782 ENCODE Processing Pipeline a1d3e2e86b994cd65ff2520fe8cabc9e https://www.encodeproject.org/files/ENCFF418YGE/@@download/ENCFF418YGE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF284YVG bigWig fold change over control ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126ZGI, ENCFF822FAY 2302826137 ENCODE Processing Pipeline eb5dcccf23025423aade6a3bc10e1cf4 https://www.encodeproject.org/files/ENCFF284YVG/@@download/ENCFF284YVG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF026NTT bigBed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF735VRI 13548233 ENCODE Processing Pipeline 944d08436729e5a69a9ae291b5e836cb https://www.encodeproject.org/files/ENCFF026NTT/@@download/ENCFF026NTT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF118JJU bigWig signal p-value ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF822FAY 1317290120 ENCODE Processing Pipeline 074b3cd3755afe4f36bed0beeb76330b https://www.encodeproject.org/files/ENCFF118JJU/@@download/ENCFF118JJU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF420GDT bigWig signal p-value ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126ZGI, ENCFF822FAY 1966589006 ENCODE Processing Pipeline 708497fe49f3ec3b3362434b0ec33a12 https://www.encodeproject.org/files/ENCFF420GDT/@@download/ENCFF420GDT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF735VRI bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF126ZGI, ENCFF822FAY 7318162 ENCODE Processing Pipeline 4e23f876f907a1591f5da16bfd7861c7 https://www.encodeproject.org/files/ENCFF735VRI/@@download/ENCFF735VRI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF804NML bigWig signal p-value ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF126ZGI 1285003301 ENCODE Processing Pipeline 7667d7f4d7a105361ee209cc9f0c69bf https://www.encodeproject.org/files/ENCFF804NML/@@download/ENCFF804NML.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF837HTS bigWig fold change over control ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF126ZGI 1586589669 ENCODE Processing Pipeline 41dc3163bc6b64a6331ba75bf5785cfa https://www.encodeproject.org/files/ENCFF837HTS/@@download/ENCFF837HTS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF970XCX bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF126ZGI 7160058 ENCODE Processing Pipeline 599313d6b918212e09e0834ac21a64f7 https://www.encodeproject.org/files/ENCFF970XCX/@@download/ENCFF970XCX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF417JSD bigBed narrowPeak conservative idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF690NDS 1602056 ENCODE Processing Pipeline a7f1ae3637b8d24d3902912ff9a7ecfb https://www.encodeproject.org/files/ENCFF417JSD/@@download/ENCFF417JSD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF491MLO bigBed narrowPeak optimal idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF138HMJ 1760279 ENCODE Processing Pipeline fecf709ecc7ba76dfefc43b6eef5dc92 https://www.encodeproject.org/files/ENCFF491MLO/@@download/ENCFF491MLO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF690NDS bed narrowPeak conservative idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF418YGE, ENCFF419RSJ, ENCFF735VRI, ENCFF970XCX 843243 ENCODE Processing Pipeline 6609883c2ef47b252816e01ccbb99b4e https://www.encodeproject.org/files/ENCFF690NDS/@@download/ENCFF690NDS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF138HMJ bed narrowPeak optimal idr thresholded peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF418YGE, ENCFF419RSJ, ENCFF735VRI, ENCFF970XCX 949815 ENCODE Processing Pipeline b1c0499d25008f1025767f609f247099 https://www.encodeproject.org/files/ENCFF138HMJ/@@download/ENCFF138HMJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF046BNP fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 2 ENCFF673POI 2537206957 Michael Snyder, Stanford 7fcaaafe97019a0e0a9d18b0c390ef83 https://www.encodeproject.org/files/ENCFF046BNP/@@download/ENCFF046BNP.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF673POI fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 1 100 paired-ended 1 ENCFF046BNP 2271496038 Michael Snyder, Stanford e48679d1959bae02cebbc2439d4fdf19 https://www.encodeproject.org/files/ENCFF673POI/@@download/ENCFF673POI.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF608SVW bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF643CGH, ENCFF673POI 4373092768 ENCODE Processing Pipeline 18ed7e8e69c296f19a84d059ce37b392 https://www.encodeproject.org/files/ENCFF608SVW/@@download/ENCFF608SVW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF499GGU bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF673POI, ENCFF807MUK 4372430794 ENCODE Processing Pipeline cc116844169dd172448f37bc21ab0a82 https://www.encodeproject.org/files/ENCFF499GGU/@@download/ENCFF499GGU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF699XZD bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF643CGH, ENCFF673POI 2431108563 ENCODE Processing Pipeline 0705067d77665e3a4bed14ce3f7488fa https://www.encodeproject.org/files/ENCFF699XZD/@@download/ENCFF699XZD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF990UBY bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF673POI, ENCFF807MUK 2427558169 ENCODE Processing Pipeline b82ee0e39d49b4b9256780f1ba57a5bb https://www.encodeproject.org/files/ENCFF990UBY/@@download/ENCFF990UBY.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF351HVZ bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 998189592 ENCODE Processing Pipeline ac3c5d8d56e5a122215f89fa87555ad0 https://www.encodeproject.org/files/ENCFF351HVZ/@@download/ENCFF351HVZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF372MKM bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 919602016 ENCODE Processing Pipeline d560b881ab1e36c1510656756fd3794f https://www.encodeproject.org/files/ENCFF372MKM/@@download/ENCFF372MKM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF061LQH fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF294AIF 3621012703 Michael Snyder, Stanford 78a7e485f66888dd9c98404b85e20889 https://www.encodeproject.org/files/ENCFF061LQH/@@download/ENCFF061LQH.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF294AIF fastq reads ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF061LQH 2970314825 Michael Snyder, Stanford 562e1b2b82e65e44b2bb7c0bc8a4bd77 https://www.encodeproject.org/files/ENCFF294AIF/@@download/ENCFF294AIF.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF397TMG bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF807MUK 6265236147 ENCODE Processing Pipeline 7023fc28c6d8055f3bb6637083872b10 https://www.encodeproject.org/files/ENCFF397TMG/@@download/ENCFF397TMG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF978HGN bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF807MUK 4978857912 ENCODE Processing Pipeline 50166d70fd53e28881f70f3d0d527c5d https://www.encodeproject.org/files/ENCFF978HGN/@@download/ENCFF978HGN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF369IXJ bam unfiltered alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF643CGH 6271675234 ENCODE Processing Pipeline a3b977050c308a31824ed8ae51542a8e https://www.encodeproject.org/files/ENCFF369IXJ/@@download/ENCFF369IXJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF426PKA bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF643CGH 4987203204 ENCODE Processing Pipeline 30d64440d47ac5b97966c1a8722e0570 https://www.encodeproject.org/files/ENCFF426PKA/@@download/ENCFF426PKA.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF884LYZ bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF322NTO, ENCFF699XZD 921846633 ENCODE Processing Pipeline 02c328335e12f0ca97e0e146019b287e https://www.encodeproject.org/files/ENCFF884LYZ/@@download/ENCFF884LYZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF172CTG bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR 1787522536 ENCODE Processing Pipeline ca3be90bc547093c841dfc852d98d8fa https://www.encodeproject.org/files/ENCFF172CTG/@@download/ENCFF172CTG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF676GTL bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF322NTO, ENCFF699XZD 998832721 ENCODE Processing Pipeline aa06d0201b82bc911d5b6c1ebc6075dc https://www.encodeproject.org/files/ENCFF676GTL/@@download/ENCFF676GTL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF106SXI bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR, ENCFF699XZD 2031920546 ENCODE Processing Pipeline ceb4c9d11eefc35f39319a84a57c518a https://www.encodeproject.org/files/ENCFF106SXI/@@download/ENCFF106SXI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF804CWU bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR 1894344529 ENCODE Processing Pipeline 78c7a80e24f4019ce34ed9750823a3ef https://www.encodeproject.org/files/ENCFF804CWU/@@download/ENCFF804CWU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF561TKX bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR, ENCFF699XZD 2200199014 ENCODE Processing Pipeline 50a3a2228f60ba97b02197079bd61c6e https://www.encodeproject.org/files/ENCFF561TKX/@@download/ENCFF561TKX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF929JFV bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR 6807133 ENCODE Processing Pipeline b14a2582d4ea32cc3de1df1194e646d3 https://www.encodeproject.org/files/ENCFF929JFV/@@download/ENCFF929JFV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF585SRV bed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF305CPJ, ENCFF419RSJ, ENCFF488IXJ, ENCFF929JFV 221269 ENCODE Processing Pipeline b50031f2ad7a050c0994d7b8d57f8b10 https://www.encodeproject.org/files/ENCFF585SRV/@@download/ENCFF585SRV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF313HWC bigBed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF585SRV 523523 ENCODE Processing Pipeline 00eb5b13186cb3b1c88366c7159797a7 https://www.encodeproject.org/files/ENCFF313HWC/@@download/ENCFF313HWC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF488IXJ bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF322NTO, ENCFF426PKA, ENCFF666ATR, ENCFF699XZD 7234070 ENCODE Processing Pipeline 14077f1fb2aa3473869bf6a4bb420094 https://www.encodeproject.org/files/ENCFF488IXJ/@@download/ENCFF488IXJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF206GKF bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF120JZJ 11494220 ENCODE Processing Pipeline eb878c1204ebfb18e0b8b6706972a5be https://www.encodeproject.org/files/ENCFF206GKF/@@download/ENCFF206GKF.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF091ZZL bigBed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF794KET 521577 ENCODE Processing Pipeline 2ec3515b8e506a2677bcf4f55dc4c262 https://www.encodeproject.org/files/ENCFF091ZZL/@@download/ENCFF091ZZL.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF609WTE bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF305CPJ 13193531 ENCODE Processing Pipeline 41f15a01e81aaba0c2c050a96d1200f3 https://www.encodeproject.org/files/ENCFF609WTE/@@download/ENCFF609WTE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF758RQJ bed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF305CPJ, ENCFF419RSJ, ENCFF488IXJ, ENCFF929JFV 391712 ENCODE Processing Pipeline 63c3b3b5341fb4a06d72db54da8e278d https://www.encodeproject.org/files/ENCFF758RQJ/@@download/ENCFF758RQJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF686GBQ bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN 1910311667 ENCODE Processing Pipeline 1e36891d4076593f079f0611b0e7f386 https://www.encodeproject.org/files/ENCFF686GBQ/@@download/ENCFF686GBQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF432CDN bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 6786469 ENCODE Processing Pipeline 4edfb0aa2d1440a8882779dda099addf https://www.encodeproject.org/files/ENCFF432CDN/@@download/ENCFF432CDN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF752DQJ bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF432CDN 13198252 ENCODE Processing Pipeline 0d66f78fc407445cdc1d378526c7d921 https://www.encodeproject.org/files/ENCFF752DQJ/@@download/ENCFF752DQJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF305CPJ bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF322NTO, ENCFF699XZD 6777773 ENCODE Processing Pipeline fcd9228605790b0e7c0ea983dff31b3a https://www.encodeproject.org/files/ENCFF305CPJ/@@download/ENCFF305CPJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF212KAK bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF929JFV 11508582 ENCODE Processing Pipeline 333420c1381f51b7892066e93fb7789f https://www.encodeproject.org/files/ENCFF212KAK/@@download/ENCFF212KAK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF890GTG bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF488IXJ 13339896 ENCODE Processing Pipeline 737c3e2e8b3c118d522f640444348c5d https://www.encodeproject.org/files/ENCFF890GTG/@@download/ENCFF890GTG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF995RFJ bigBed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF758RQJ 799431 ENCODE Processing Pipeline 7bea95d9e7377c28ed86c0f035cfdee7 https://www.encodeproject.org/files/ENCFF995RFJ/@@download/ENCFF995RFJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF635KDV bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN 1595939203 ENCODE Processing Pipeline aac642029fa4f15215c9d6c5ee246a69 https://www.encodeproject.org/files/ENCFF635KDV/@@download/ENCFF635KDV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF120JZJ bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN 6801936 ENCODE Processing Pipeline cffb43b1cf09a50987c4add4ade78851 https://www.encodeproject.org/files/ENCFF120JZJ/@@download/ENCFF120JZJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF794KET bed narrowPeak conservative idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF076KST, ENCFF120JZJ, ENCFF432CDN 220103 ENCODE Processing Pipeline f38b4a46db8ccefc71442cc02fd53c6f https://www.encodeproject.org/files/ENCFF794KET/@@download/ENCFF794KET.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF310WZG bigWig signal p-value ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN, ENCFF990UBY 2192024861 ENCODE Processing Pipeline 432172030283c292c67e5d4f7a1c1f70 https://www.encodeproject.org/files/ENCFF310WZG/@@download/ENCFF310WZG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF489AGF bigWig fold change over control ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN, ENCFF990UBY 2215448513 ENCODE Processing Pipeline 881ec64c2987e8b8f95319b9dec4c3c6 https://www.encodeproject.org/files/ENCFF489AGF/@@download/ENCFF489AGF.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF076KST bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF592WAL, ENCFF901CND, ENCFF978HGN, ENCFF990UBY 7225594 ENCODE Processing Pipeline b075a273973b0b1cf1213d5d914efc1b https://www.encodeproject.org/files/ENCFF076KST/@@download/ENCFF076KST.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF295DQJ bigBed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF076KST 13334506 ENCODE Processing Pipeline 8751513fa3a9ed92d4a41ba5361177f0 https://www.encodeproject.org/files/ENCFF295DQJ/@@download/ENCFF295DQJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF240NLG bigBed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF166OZW 801372 ENCODE Processing Pipeline af344598e05f442aebfa7f30a5b481f4 https://www.encodeproject.org/files/ENCFF240NLG/@@download/ENCFF240NLG.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF166OZW bed narrowPeak optimal idr thresholded peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2, 3 ENCFF001TDO, ENCFF076KST, ENCFF120JZJ, ENCFF432CDN 392782 ENCODE Processing Pipeline bc27294f20916f956fe9f163466e61a7 https://www.encodeproject.org/files/ENCFF166OZW/@@download/ENCFF166OZW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF336XLE fastq reads ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF015NKR 2477015531 Michael Snyder, Stanford 1487dc28230820176704e7f4f13b2a3d SRA:SRR5111628 https://www.encodeproject.org/files/ENCFF336XLE/@@download/ENCFF336XLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF268OZO fastq reads ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF286NOT 2016546837 Michael Snyder, Stanford a7ea0003816b2afe1fb9c5c9be869754 SRA:SRR5111627 https://www.encodeproject.org/files/ENCFF268OZO/@@download/ENCFF268OZO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF015NKR fastq reads ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF336XLE 2463016138 Michael Snyder, Stanford 66157fd503bbe7871d1b15f5113ec503 SRA:SRR5111628 https://www.encodeproject.org/files/ENCFF015NKR/@@download/ENCFF015NKR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF286NOT fastq reads ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF268OZO 2026054015 Michael Snyder, Stanford 0b16aa2af94adcb71ddc6818224fdd04 SRA:SRR5111627 https://www.encodeproject.org/files/ENCFF286NOT/@@download/ENCFF286NOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF674JEH bam unfiltered alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF015NKR, ENCFF336XLE, ENCFF643CGH 5482596203 ENCODE Processing Pipeline 788dc53c44a81a3ddb6b45881e119fef https://www.encodeproject.org/files/ENCFF674JEH/@@download/ENCFF674JEH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF896JVW bam unfiltered alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF268OZO, ENCFF286NOT, ENCFF807MUK 4522413538 ENCODE Processing Pipeline 89d2fa1c41b1017105f667dce9f9f0a2 https://www.encodeproject.org/files/ENCFF896JVW/@@download/ENCFF896JVW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF456PUZ bam unfiltered alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF268OZO, ENCFF286NOT, ENCFF643CGH 4525350990 ENCODE Processing Pipeline 507a5600bc22cbe73e474ed433c1cf51 https://www.encodeproject.org/files/ENCFF456PUZ/@@download/ENCFF456PUZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF978JOV bam unfiltered alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF015NKR, ENCFF336XLE, ENCFF807MUK 5477656776 ENCODE Processing Pipeline 079eb6baa57346f6f01fbff6ac332667 https://www.encodeproject.org/files/ENCFF978JOV/@@download/ENCFF978JOV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF094UHU bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF268OZO, ENCFF286NOT, ENCFF807MUK 3841218256 ENCODE Processing Pipeline 5aed8267fed692adf868b878426dc4d7 https://www.encodeproject.org/files/ENCFF094UHU/@@download/ENCFF094UHU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF289ROF bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF268OZO, ENCFF286NOT, ENCFF643CGH 3842928747 ENCODE Processing Pipeline 80648096a56aea952d93d8a373afdbab https://www.encodeproject.org/files/ENCFF289ROF/@@download/ENCFF289ROF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF632DBT bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF015NKR, ENCFF336XLE, ENCFF643CGH 4817694604 ENCODE Processing Pipeline f56cdef1bfc4391d3d326e428b6513ce https://www.encodeproject.org/files/ENCFF632DBT/@@download/ENCFF632DBT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF387CIP bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF015NKR, ENCFF336XLE, ENCFF807MUK 4816317905 ENCODE Processing Pipeline aed2555ce4ed0c6cbe8d56e20bf78f6b https://www.encodeproject.org/files/ENCFF387CIP/@@download/ENCFF387CIP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF087EKH bigWig signal p-value ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF387CIP 1207555682 ENCODE Processing Pipeline 97d90f341f3a2e47ef2803f99e536fdb https://www.encodeproject.org/files/ENCFF087EKH/@@download/ENCFF087EKH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF126JIO bigWig signal p-value ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF094UHU 1292394878 ENCODE Processing Pipeline 89a51f637176dca46c98cc118d98f7e0 https://www.encodeproject.org/files/ENCFF126JIO/@@download/ENCFF126JIO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF474WTV bigWig signal p-value ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF094UHU, ENCFF387CIP 1493119006 ENCODE Processing Pipeline dac4a3d0f48aa534093e88a1227b1b28 https://www.encodeproject.org/files/ENCFF474WTV/@@download/ENCFF474WTV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF152DAT bigWig fold change over control ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF387CIP 1453346742 ENCODE Processing Pipeline 34e4012ddda561d5ac267858a5ac328b https://www.encodeproject.org/files/ENCFF152DAT/@@download/ENCFF152DAT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF992OZB bigWig fold change over control ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF094UHU 1284407006 ENCODE Processing Pipeline 44ac3076c30846d0ebc0194b8a06fb0b https://www.encodeproject.org/files/ENCFF992OZB/@@download/ENCFF992OZB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF142PIL bigWig fold change over control ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF094UHU, ENCFF387CIP 1929613088 ENCODE Processing Pipeline 065b8c045747cb19da7d94a9e52d888c https://www.encodeproject.org/files/ENCFF142PIL/@@download/ENCFF142PIL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF668IDF bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF387CIP 6818680 ENCODE Processing Pipeline 3de7faffd2ee395a1e1cd606c5784558 https://www.encodeproject.org/files/ENCFF668IDF/@@download/ENCFF668IDF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF652PGK bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF094UHU 6547971 ENCODE Processing Pipeline 680510c3082b245c06a4c927a0a47499 https://www.encodeproject.org/files/ENCFF652PGK/@@download/ENCFF652PGK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF910YVQ bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF094UHU, ENCFF387CIP 7151478 ENCODE Processing Pipeline d6bda7e93f6e1895e7dee036cf2c80a0 https://www.encodeproject.org/files/ENCFF910YVQ/@@download/ENCFF910YVQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF448NAW bigBed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF668IDF 11239859 ENCODE Processing Pipeline ef75d074fb0714f8e1019b37619e00a4 https://www.encodeproject.org/files/ENCFF448NAW/@@download/ENCFF448NAW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF109JDS bigBed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652PGK 11387854 ENCODE Processing Pipeline 3da32576b1703b760f890c6cb3ae759b https://www.encodeproject.org/files/ENCFF109JDS/@@download/ENCFF109JDS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF508NHO bigBed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF910YVQ 11105197 ENCODE Processing Pipeline d0a3ca5dbc378e4f8dd20872e1648faa https://www.encodeproject.org/files/ENCFF508NHO/@@download/ENCFF508NHO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF587MJE bed narrowPeak conservative idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF652PGK, ENCFF668IDF, ENCFF910YVQ 186325 ENCODE Processing Pipeline dfd082cbdc76f4b4be269797877f7a81 https://www.encodeproject.org/files/ENCFF587MJE/@@download/ENCFF587MJE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF633EGA bigBed narrowPeak conservative idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF587MJE 380377 ENCODE Processing Pipeline c1363bcff2ffae443d5436aeaa234501 https://www.encodeproject.org/files/ENCFF633EGA/@@download/ENCFF633EGA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF619XUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF260VLG 437700 ENCODE Processing Pipeline 2eddd4eea817622ba781ba8d4de91938 https://www.encodeproject.org/files/ENCFF619XUZ/@@download/ENCFF619XUZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF260VLG bed narrowPeak optimal idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF652PGK, ENCFF668IDF, ENCFF910YVQ 225785 ENCODE Processing Pipeline 1618a96c92a4119db18fd65d66903817 https://www.encodeproject.org/files/ENCFF260VLG/@@download/ENCFF260VLG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF249VTH bigWig signal p-value ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF632DBT 1361017241 ENCODE Processing Pipeline 3be39a34752f1630cd2615a9b053e424 https://www.encodeproject.org/files/ENCFF249VTH/@@download/ENCFF249VTH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF660BWK bigWig signal p-value ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289ROF 1339217206 ENCODE Processing Pipeline 5f88e6db43afce9960a8fca3411261e9 https://www.encodeproject.org/files/ENCFF660BWK/@@download/ENCFF660BWK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF783XJX bigWig signal p-value ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF289ROF, ENCFF632DBT 1428225421 ENCODE Processing Pipeline e8e5799382ff2dcdee052e5fb12b5169 https://www.encodeproject.org/files/ENCFF783XJX/@@download/ENCFF783XJX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF573CGM bigWig fold change over control ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF632DBT 1454215722 ENCODE Processing Pipeline 944fd9826c05f1ecb4b14570f804ccd0 https://www.encodeproject.org/files/ENCFF573CGM/@@download/ENCFF573CGM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF974AFF bigWig fold change over control ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289ROF 1282767247 ENCODE Processing Pipeline fa0f343e6af1a4b8f4ec1087d83dc971 https://www.encodeproject.org/files/ENCFF974AFF/@@download/ENCFF974AFF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF944QYL bigWig fold change over control ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF289ROF, ENCFF632DBT 1918242506 ENCODE Processing Pipeline 38fc2a01cb2aa49832c913992f99ab51 https://www.encodeproject.org/files/ENCFF944QYL/@@download/ENCFF944QYL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF263WGI bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF632DBT 6694895 ENCODE Processing Pipeline cd83c89b977021110306fd6b2ec62fca https://www.encodeproject.org/files/ENCFF263WGI/@@download/ENCFF263WGI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF306XAS bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289ROF 6418144 ENCODE Processing Pipeline 80ca7f54d52b284346a481eb8948db9d https://www.encodeproject.org/files/ENCFF306XAS/@@download/ENCFF306XAS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF809SXZ bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF289ROF, ENCFF632DBT 7094170 ENCODE Processing Pipeline bd3e0188a1dd33eb8f6a5dc96f9b998f https://www.encodeproject.org/files/ENCFF809SXZ/@@download/ENCFF809SXZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF911AOS bigBed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF263WGI 11250810 ENCODE Processing Pipeline 90b0ed95a88732cfe4f0e7bfc6de341d https://www.encodeproject.org/files/ENCFF911AOS/@@download/ENCFF911AOS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF564DDI bigBed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF306XAS 11388726 ENCODE Processing Pipeline 406b22f3db2bb0d39a66641b22a69533 https://www.encodeproject.org/files/ENCFF564DDI/@@download/ENCFF564DDI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF526QNW bigBed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF809SXZ 11106562 ENCODE Processing Pipeline b2251b08f4e76e72f45ed13c316bfcde https://www.encodeproject.org/files/ENCFF526QNW/@@download/ENCFF526QNW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF825UAF bigBed narrowPeak conservative idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF073LLC 379738 ENCODE Processing Pipeline 3cf65b05faaec68f4aca474d317a2a08 https://www.encodeproject.org/files/ENCFF825UAF/@@download/ENCFF825UAF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF073LLC bed narrowPeak conservative idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF263WGI, ENCFF306XAS, ENCFF419RSJ, ENCFF809SXZ 184741 ENCODE Processing Pipeline 32e455e106a24ba7cf2fa4503f8627e7 https://www.encodeproject.org/files/ENCFF073LLC/@@download/ENCFF073LLC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF734VVV bigBed narrowPeak optimal idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF311IXZ 432556 ENCODE Processing Pipeline d7e3cbc2b81db09333df99f282ebc46b https://www.encodeproject.org/files/ENCFF734VVV/@@download/ENCFF734VVV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF311IXZ bed narrowPeak optimal idr thresholded peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF263WGI, ENCFF306XAS, ENCFF419RSJ, ENCFF809SXZ 220986 ENCODE Processing Pipeline f9ff642a9aa828dca05e87c19efc0d50 https://www.encodeproject.org/files/ENCFF311IXZ/@@download/ENCFF311IXZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF905LHP bam unfiltered alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF746KTH, ENCFF749IGF, ENCFF807MUK 7534649012 ENCODE Processing Pipeline 6600fb816bde8b26c2313816a654f1b3 https://www.encodeproject.org/files/ENCFF905LHP/@@download/ENCFF905LHP.bam hg19 released ENCFF242FWQ bam unfiltered alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF009QNH, ENCFF089RFH, ENCFF807MUK 6465401854 ENCODE Processing Pipeline 15530b2fe6e0aaa4f2da6d0d0f6d8696 https://www.encodeproject.org/files/ENCFF242FWQ/@@download/ENCFF242FWQ.bam hg19 released ENCFF009QNH fastq reads ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 1 ENCFF089RFH 2917415008 Michael Snyder, Stanford 842c3d5a30d15d9bc92024966a45e428 SRA:SRR5111215 https://www.encodeproject.org/files/ENCFF009QNH/@@download/ENCFF009QNH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF089RFH fastq reads ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 1 100 paired-ended 2 ENCFF009QNH 2975239614 Michael Snyder, Stanford 4d7217d685d92ff7e12f4b85cb931410 SRA:SRR5111215 https://www.encodeproject.org/files/ENCFF089RFH/@@download/ENCFF089RFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF746KTH fastq reads ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 2 ENCFF749IGF 3521647741 Michael Snyder, Stanford fc386b802504f32a3f7313642750a66a SRA:SRR5111216 https://www.encodeproject.org/files/ENCFF746KTH/@@download/ENCFF746KTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF749IGF fastq reads ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 1 100 paired-ended 1 ENCFF746KTH 3433597202 Michael Snyder, Stanford ce6a022b66ae5f9c0f39feccc901cd32 SRA:SRR5111216 https://www.encodeproject.org/files/ENCFF749IGF/@@download/ENCFF749IGF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF808IEJ bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF746KTH, ENCFF749IGF, ENCFF807MUK 6210597113 ENCODE Processing Pipeline fdb93a161772e5349283aac7dbb7cee8 https://www.encodeproject.org/files/ENCFF808IEJ/@@download/ENCFF808IEJ.bam hg19 released ENCFF523AHK bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF009QNH, ENCFF089RFH, ENCFF807MUK 5334395788 ENCODE Processing Pipeline 8abe68fea25c76fd5ee627dcbdb63c9a https://www.encodeproject.org/files/ENCFF523AHK/@@download/ENCFF523AHK.bam hg19 released ENCFF463QPZ bigWig signal p-value ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF449NNE, ENCFF523AHK, ENCFF808IEJ, ENCFF999EQI 1741836298 ENCODE Processing Pipeline 1c353ea55db485ed0c91a5622cfe94f0 https://www.encodeproject.org/files/ENCFF463QPZ/@@download/ENCFF463QPZ.bigWig hg19 released ENCFF037PRK bigWig fold change over control ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF449NNE, ENCFF523AHK, ENCFF808IEJ, ENCFF999EQI 2273925633 ENCODE Processing Pipeline dec3fe3d7d7ea4aceafa61a6ed20ddc7 https://www.encodeproject.org/files/ENCFF037PRK/@@download/ENCFF037PRK.bigWig hg19 released ENCFF020SSF bam unfiltered alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF009QNH, ENCFF089RFH, ENCFF643CGH 6476608211 ENCODE Processing Pipeline 1c6ca099fcbe0045a8af1f856ea907db https://www.encodeproject.org/files/ENCFF020SSF/@@download/ENCFF020SSF.bam GRCh38 released ENCFF735QZR bam unfiltered alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF643CGH, ENCFF746KTH, ENCFF749IGF 7546828308 ENCODE Processing Pipeline 3c6d56462627dd77b71dd72706f8ea21 https://www.encodeproject.org/files/ENCFF735QZR/@@download/ENCFF735QZR.bam GRCh38 released ENCFF890FEL bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF009QNH, ENCFF089RFH, ENCFF643CGH 5349778206 ENCODE Processing Pipeline d54c186f02069ebfdab805792eebcaae https://www.encodeproject.org/files/ENCFF890FEL/@@download/ENCFF890FEL.bam GRCh38 released ENCFF463YKI bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF643CGH, ENCFF746KTH, ENCFF749IGF 6228401364 ENCODE Processing Pipeline 746b005b7bbc6b94b33df309e980cee5 https://www.encodeproject.org/files/ENCFF463YKI/@@download/ENCFF463YKI.bam GRCh38 released ENCFF683TUD bigWig signal p-value ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF190EPQ, ENCFF890FEL 1145633194 ENCODE Processing Pipeline b73f76ed11c3b1c5c1495253b852bf1e https://www.encodeproject.org/files/ENCFF683TUD/@@download/ENCFF683TUD.bigWig GRCh38 released ENCFF545BJQ bigWig signal p-value ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF190EPQ, ENCFF463YKI, ENCFF950AXC 1645112968 ENCODE Processing Pipeline 81edcfea7a760e7411f7fcbf00eec781 https://www.encodeproject.org/files/ENCFF545BJQ/@@download/ENCFF545BJQ.bigWig GRCh38 released ENCFF971EMC bigWig signal p-value ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF190EPQ, ENCFF463YKI, ENCFF890FEL, ENCFF950AXC 1897256560 ENCODE Processing Pipeline 437eb82da2ac4c443e328f3747e05ac9 https://www.encodeproject.org/files/ENCFF971EMC/@@download/ENCFF971EMC.bigWig GRCh38 released ENCFF038BON bigWig fold change over control ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF190EPQ, ENCFF890FEL 1278645774 ENCODE Processing Pipeline beaf45c2e58cf05f3ce6588ae81b1543 https://www.encodeproject.org/files/ENCFF038BON/@@download/ENCFF038BON.bigWig GRCh38 released ENCFF852HJN bigWig fold change over control ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF190EPQ, ENCFF463YKI, ENCFF950AXC 1783373906 ENCODE Processing Pipeline 40c839dd81154cd4d392fc3a1e3d6efd https://www.encodeproject.org/files/ENCFF852HJN/@@download/ENCFF852HJN.bigWig GRCh38 released ENCFF193XGX bigWig fold change over control ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF190EPQ, ENCFF463YKI, ENCFF890FEL, ENCFF950AXC 2281663935 ENCODE Processing Pipeline 1f4cdc1354155697ff341d71a9f7b2b2 https://www.encodeproject.org/files/ENCFF193XGX/@@download/ENCFF193XGX.bigWig GRCh38 released ENCFF995ZIE bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF190EPQ, ENCFF463YKI, ENCFF950AXC 6767531 ENCODE Processing Pipeline 57e5f0248e23f37fa75d9cfe4a1624dc https://www.encodeproject.org/files/ENCFF995ZIE/@@download/ENCFF995ZIE.bed.gz GRCh38 released ENCFF542EPK bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF190EPQ, ENCFF463YKI, ENCFF890FEL, ENCFF950AXC 7164703 ENCODE Processing Pipeline 17d65a9d5cea66d4e2fe435557eb1069 https://www.encodeproject.org/files/ENCFF542EPK/@@download/ENCFF542EPK.bed.gz GRCh38 released ENCFF765ULL bigBed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF995ZIE 11384037 ENCODE Processing Pipeline c5cf3d64e9fba9ca919998d5d66e8bbd https://www.encodeproject.org/files/ENCFF765ULL/@@download/ENCFF765ULL.bigBed GRCh38 released ENCFF670EOC bigBed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF542EPK 11372662 ENCODE Processing Pipeline 7c197f1042e22633575cbf12d599caef https://www.encodeproject.org/files/ENCFF670EOC/@@download/ENCFF670EOC.bigBed GRCh38 released ENCFF241XYS bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF190EPQ, ENCFF890FEL 6073870 ENCODE Processing Pipeline cd361866cef2aa1198c95e0b136cf5a9 https://www.encodeproject.org/files/ENCFF241XYS/@@download/ENCFF241XYS.bed.gz GRCh38 released ENCFF277RUI bigBed narrowPeak conservative idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF997KQI 327527 ENCODE Processing Pipeline 4712b1391bb8393867c604558067033c https://www.encodeproject.org/files/ENCFF277RUI/@@download/ENCFF277RUI.bigBed GRCh38 released ENCFF997KQI bed narrowPeak conservative idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF241XYS, ENCFF419RSJ, ENCFF542EPK, ENCFF995ZIE 143062 ENCODE Processing Pipeline 0579923cb1ab1aa830f422f5ebb282c5 https://www.encodeproject.org/files/ENCFF997KQI/@@download/ENCFF997KQI.bed.gz GRCh38 released ENCFF315CHX bed narrowPeak optimal idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF241XYS, ENCFF419RSJ, ENCFF542EPK, ENCFF995ZIE 199623 ENCODE Processing Pipeline 2ae8958ab55ad56296736708c65bc4e7 https://www.encodeproject.org/files/ENCFF315CHX/@@download/ENCFF315CHX.bed.gz GRCh38 released ENCFF752RRX bigBed narrowPeak optimal idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF315CHX 412581 ENCODE Processing Pipeline 0bb7de860c968d9968de9553ab070bb8 https://www.encodeproject.org/files/ENCFF752RRX/@@download/ENCFF752RRX.bigBed GRCh38 released ENCFF058JBU bigBed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF241XYS 11457821 ENCODE Processing Pipeline 6ba4772a1c3212cdf3dc45976599f883 https://www.encodeproject.org/files/ENCFF058JBU/@@download/ENCFF058JBU.bigBed GRCh38 released ENCFF766QQT bigWig signal p-value ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF449NNE, ENCFF808IEJ, ENCFF999EQI 1663287759 ENCODE Processing Pipeline f680358ed1b4eb4b7a1d243a70286ccb https://www.encodeproject.org/files/ENCFF766QQT/@@download/ENCFF766QQT.bigWig hg19 released ENCFF945FHA bigBed narrowPeak optimal idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF144FQA 402446 ENCODE Processing Pipeline 544ae040d5886573ded90ea8158bb822 https://www.encodeproject.org/files/ENCFF945FHA/@@download/ENCFF945FHA.bigBed hg19 released ENCFF337DGH bigWig fold change over control ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF449NNE, ENCFF808IEJ, ENCFF999EQI 1779450175 ENCODE Processing Pipeline b2851248cb7e1f8edc0d42f73d880654 https://www.encodeproject.org/files/ENCFF337DGH/@@download/ENCFF337DGH.bigWig hg19 released ENCFF834WHV bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF449NNE, ENCFF523AHK 6062598 ENCODE Processing Pipeline a2b42fd8dfab567ed71052c4fe36b56e https://www.encodeproject.org/files/ENCFF834WHV/@@download/ENCFF834WHV.bed.gz hg19 released ENCFF559HBO bigBed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF834WHV 11438146 ENCODE Processing Pipeline 1e510864667117c21adab7f4b50bf4a5 https://www.encodeproject.org/files/ENCFF559HBO/@@download/ENCFF559HBO.bigBed hg19 released ENCFF765WNF bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF449NNE, ENCFF808IEJ, ENCFF999EQI 6768355 ENCODE Processing Pipeline 14566d1ce42abf4a6e38dd9c8145045b https://www.encodeproject.org/files/ENCFF765WNF/@@download/ENCFF765WNF.bed.gz hg19 released ENCFF798SIC bigWig fold change over control ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF449NNE, ENCFF523AHK 1284750705 ENCODE Processing Pipeline 71e2391af50e8e67bda602569ed7261b https://www.encodeproject.org/files/ENCFF798SIC/@@download/ENCFF798SIC.bigWig hg19 released ENCFF851TZY bed narrowPeak conservative idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF076ZSW, ENCFF765WNF, ENCFF834WHV 140512 ENCODE Processing Pipeline 9e4073ecbbfc0d1ac51b844047c674d6 https://www.encodeproject.org/files/ENCFF851TZY/@@download/ENCFF851TZY.bed.gz hg19 released ENCFF585BBM bigBed narrowPeak conservative idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF851TZY 318267 ENCODE Processing Pipeline e0faa6b5d34ad6b9a8b7bafe29c690a3 https://www.encodeproject.org/files/ENCFF585BBM/@@download/ENCFF585BBM.bigBed hg19 released ENCFF231OPO bigWig signal p-value ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF449NNE, ENCFF523AHK 1004144929 ENCODE Processing Pipeline 506f7ea8676ef390afcb0d131b32b2c1 https://www.encodeproject.org/files/ENCFF231OPO/@@download/ENCFF231OPO.bigWig hg19 released ENCFF076ZSW bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF449NNE, ENCFF523AHK, ENCFF808IEJ, ENCFF999EQI 7159712 ENCODE Processing Pipeline 784bfe97ed488a95d8828652a78cdc68 https://www.encodeproject.org/files/ENCFF076ZSW/@@download/ENCFF076ZSW.bed.gz hg19 released ENCFF144FQA bed narrowPeak optimal idr thresholded peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF001TDO, ENCFF076ZSW, ENCFF765WNF, ENCFF834WHV 196025 ENCODE Processing Pipeline 17e7c688b36ce8a85f53635d7fa8324d https://www.encodeproject.org/files/ENCFF144FQA/@@download/ENCFF144FQA.bed.gz hg19 released ENCFF850POB bigBed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF765WNF 11352490 ENCODE Processing Pipeline b61909ae45fed497812748fdce640f0c https://www.encodeproject.org/files/ENCFF850POB/@@download/ENCFF850POB.bigBed hg19 released ENCFF602AHD bigBed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1, 2 ENCFF076ZSW 11357336 ENCODE Processing Pipeline 3c581915ec7c7dada9825fd2def8e07f https://www.encodeproject.org/files/ENCFF602AHD/@@download/ENCFF602AHD.bigBed hg19 released ENCFF522POF fastq reads ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF926PZX 2058500202 Michael Snyder, Stanford 51c9b9295fd4294079c04daa30962e8c SRA:SRR5112162 https://www.encodeproject.org/files/ENCFF522POF/@@download/ENCFF522POF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF210PVG fastq reads ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF438MFB 2313089025 Michael Snyder, Stanford 85261286d173d3302b7b0176d3fad8da SRA:SRR5112161 https://www.encodeproject.org/files/ENCFF210PVG/@@download/ENCFF210PVG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF926PZX fastq reads ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF522POF 2043473317 Michael Snyder, Stanford ea2f0acaf7cc6ae13791c1b6f5d66c3e SRA:SRR5112162 https://www.encodeproject.org/files/ENCFF926PZX/@@download/ENCFF926PZX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF438MFB fastq reads ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF210PVG 2305213995 Michael Snyder, Stanford 31b2695ee1f9eed42c5daa25185393e6 SRA:SRR5112161 https://www.encodeproject.org/files/ENCFF438MFB/@@download/ENCFF438MFB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF658DRD bam unfiltered alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF522POF, ENCFF643CGH, ENCFF926PZX 4623603815 ENCODE Processing Pipeline 5982f9eac853c6324416e641189052f4 https://www.encodeproject.org/files/ENCFF658DRD/@@download/ENCFF658DRD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF242WRO bam unfiltered alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF210PVG, ENCFF438MFB, ENCFF643CGH 5159723673 ENCODE Processing Pipeline 6290895058951d4ec58a8b0af733daea https://www.encodeproject.org/files/ENCFF242WRO/@@download/ENCFF242WRO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF759UXN bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF210PVG, ENCFF438MFB, ENCFF643CGH 4562020254 ENCODE Processing Pipeline 8c5070a98a301bc9768a4c34d085ab3c https://www.encodeproject.org/files/ENCFF759UXN/@@download/ENCFF759UXN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF661VJW bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF522POF, ENCFF643CGH, ENCFF926PZX 4049924478 ENCODE Processing Pipeline f57e623271336a898982c8876d493e77 https://www.encodeproject.org/files/ENCFF661VJW/@@download/ENCFF661VJW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF087ZAI bam unfiltered alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF522POF, ENCFF807MUK, ENCFF926PZX 4616701951 ENCODE Processing Pipeline 4f08eb053609a26a28f487a5d5d5760f https://www.encodeproject.org/files/ENCFF087ZAI/@@download/ENCFF087ZAI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF970VYD bam unfiltered alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF210PVG, ENCFF438MFB, ENCFF807MUK 5151933437 ENCODE Processing Pipeline 33448c90edba07f7d0b1e98a09fd5fe4 https://www.encodeproject.org/files/ENCFF970VYD/@@download/ENCFF970VYD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF384ART bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF522POF, ENCFF807MUK, ENCFF926PZX 4046947695 ENCODE Processing Pipeline 97607807c48e16caffc8cd81f90613af https://www.encodeproject.org/files/ENCFF384ART/@@download/ENCFF384ART.bam hg19 released missing genetic modification characterization missing control alignments ENCFF229ETI bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF210PVG, ENCFF438MFB, ENCFF807MUK 4559356952 ENCODE Processing Pipeline dc3d5ec881fc7b5ddd360c6582f575a3 https://www.encodeproject.org/files/ENCFF229ETI/@@download/ENCFF229ETI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF348FTZ bigWig signal p-value ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229ETI 1443587135 ENCODE Processing Pipeline 13b867f4a7686b2e9e5361141ed817c9 https://www.encodeproject.org/files/ENCFF348FTZ/@@download/ENCFF348FTZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF581SCM bigWig signal p-value ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF384ART 1244676867 ENCODE Processing Pipeline f65886d52b51f0433fc1b2ac415b8e68 https://www.encodeproject.org/files/ENCFF581SCM/@@download/ENCFF581SCM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF580GVD bigWig signal p-value ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF229ETI, ENCFF384ART 1557605347 ENCODE Processing Pipeline 579707d7e6e2a1de6cc0655769ce865b https://www.encodeproject.org/files/ENCFF580GVD/@@download/ENCFF580GVD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF881MTS bigWig fold change over control ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229ETI 1454231327 ENCODE Processing Pipeline 66bb30cb7c7e49b0661c8ed15487d34d https://www.encodeproject.org/files/ENCFF881MTS/@@download/ENCFF881MTS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF484NGW bigWig fold change over control ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF384ART 1320339297 ENCODE Processing Pipeline 662ba5c54275bcbf074c3a5f2c85477c https://www.encodeproject.org/files/ENCFF484NGW/@@download/ENCFF484NGW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF299JKF bigWig fold change over control ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF229ETI, ENCFF384ART 1958460290 ENCODE Processing Pipeline 869e63972bb8fa4512a9276734bce1f6 https://www.encodeproject.org/files/ENCFF299JKF/@@download/ENCFF299JKF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF244RZK bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229ETI 6742424 ENCODE Processing Pipeline 8ed7aca79957cdd4f70a8974081253dc https://www.encodeproject.org/files/ENCFF244RZK/@@download/ENCFF244RZK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF316OES bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF384ART 6376587 ENCODE Processing Pipeline fa6381e90fda9657357f4fb93071d0ed https://www.encodeproject.org/files/ENCFF316OES/@@download/ENCFF316OES.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF685EYO bigBed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF244RZK 11304568 ENCODE Processing Pipeline 11e07b4e1914e1a58bc84730eadb555e https://www.encodeproject.org/files/ENCFF685EYO/@@download/ENCFF685EYO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF293RJU bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF229ETI, ENCFF384ART 7188883 ENCODE Processing Pipeline ef049cf9d053cf24b7ee51cf4107ffdb https://www.encodeproject.org/files/ENCFF293RJU/@@download/ENCFF293RJU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF186SKD bigBed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF316OES 11396040 ENCODE Processing Pipeline 95e003b202cd01bbeb1ec580a8f2c7e7 https://www.encodeproject.org/files/ENCFF186SKD/@@download/ENCFF186SKD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF686LZD bigBed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF293RJU 11240151 ENCODE Processing Pipeline c040dc5d6cb797d1d658dca9ddfe07c6 https://www.encodeproject.org/files/ENCFF686LZD/@@download/ENCFF686LZD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF114AMU bed narrowPeak conservative idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF244RZK, ENCFF293RJU, ENCFF316OES 46373 ENCODE Processing Pipeline b19e4fef46b23352ddc7f87be8b97fd6 https://www.encodeproject.org/files/ENCFF114AMU/@@download/ENCFF114AMU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF053UVX bed narrowPeak optimal idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF244RZK, ENCFF293RJU, ENCFF316OES 64612 ENCODE Processing Pipeline bcc832454684ae08ab68d99dc8183f78 https://www.encodeproject.org/files/ENCFF053UVX/@@download/ENCFF053UVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF328GOV bigBed narrowPeak conservative idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF114AMU 136317 ENCODE Processing Pipeline 27f4814fe885336552cf1cf8a0279320 https://www.encodeproject.org/files/ENCFF328GOV/@@download/ENCFF328GOV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF978VXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF053UVX 163546 ENCODE Processing Pipeline 466a1ebab3194fd96d18c8638ca3977d https://www.encodeproject.org/files/ENCFF978VXZ/@@download/ENCFF978VXZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF982HIB bigWig signal p-value ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF661VJW 1381672061 ENCODE Processing Pipeline 13ca6b61242ef024c4828fcd11eadff7 https://www.encodeproject.org/files/ENCFF982HIB/@@download/ENCFF982HIB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF167AVN bigWig signal p-value ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF759UXN 1474468935 ENCODE Processing Pipeline 841f741545d1f305baab949d7a7ab8e9 https://www.encodeproject.org/files/ENCFF167AVN/@@download/ENCFF167AVN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF184MOE bigWig signal p-value ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF661VJW, ENCFF759UXN 1417980055 ENCODE Processing Pipeline ccbf90decf16af0a1a395f6e56aca488 https://www.encodeproject.org/files/ENCFF184MOE/@@download/ENCFF184MOE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF215OUI bigWig fold change over control ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF759UXN 1422490758 ENCODE Processing Pipeline d65ef084cdade3e1857848071b9530c0 https://www.encodeproject.org/files/ENCFF215OUI/@@download/ENCFF215OUI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF675EFN bigWig fold change over control ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF661VJW 1320358810 ENCODE Processing Pipeline 628a3b155e586333be18baed3af3b8e5 https://www.encodeproject.org/files/ENCFF675EFN/@@download/ENCFF675EFN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF446BDT bigWig fold change over control ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF661VJW, ENCFF759UXN 1949734755 ENCODE Processing Pipeline 19f8ac34bf6a6211a63b08e4573cbe94 https://www.encodeproject.org/files/ENCFF446BDT/@@download/ENCFF446BDT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF557HEF bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF661VJW 6236550 ENCODE Processing Pipeline 0be0a7e30a845426f8f90c7f880e6800 https://www.encodeproject.org/files/ENCFF557HEF/@@download/ENCFF557HEF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF629SOV bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF759UXN 6584969 ENCODE Processing Pipeline 226ad18e705041d9e39d676d9946099e https://www.encodeproject.org/files/ENCFF629SOV/@@download/ENCFF629SOV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF385YRQ bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF661VJW, ENCFF759UXN 7155864 ENCODE Processing Pipeline 08b7d94ceaf971e9245ac7df9d698eab https://www.encodeproject.org/files/ENCFF385YRQ/@@download/ENCFF385YRQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF552HZV bigBed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF385YRQ 11243820 ENCODE Processing Pipeline 4d8464d572314f9fa2994d645942d0b0 https://www.encodeproject.org/files/ENCFF552HZV/@@download/ENCFF552HZV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF345AIP bigBed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF557HEF 11398188 ENCODE Processing Pipeline 12a744c282a608f070932e88c1590568 https://www.encodeproject.org/files/ENCFF345AIP/@@download/ENCFF345AIP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF077AAA bigBed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF629SOV 11311919 ENCODE Processing Pipeline 395178baeb8562d07df6a89184c116e9 https://www.encodeproject.org/files/ENCFF077AAA/@@download/ENCFF077AAA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF019YHK bed narrowPeak conservative idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF385YRQ, ENCFF419RSJ, ENCFF557HEF, ENCFF629SOV 47143 ENCODE Processing Pipeline d8eb642a07616ebadc7d56f4cf6bba38 https://www.encodeproject.org/files/ENCFF019YHK/@@download/ENCFF019YHK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF849QRB bigBed narrowPeak conservative idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF019YHK 138800 ENCODE Processing Pipeline 109999a13f62fa0830a84e293f14fe55 https://www.encodeproject.org/files/ENCFF849QRB/@@download/ENCFF849QRB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF825QEY bigBed narrowPeak optimal idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF735QIK 166512 ENCODE Processing Pipeline 5cf178c87a71147ee569c77b6dda75eb https://www.encodeproject.org/files/ENCFF825QEY/@@download/ENCFF825QEY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF735QIK bed narrowPeak optimal idr thresholded peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF385YRQ, ENCFF419RSJ, ENCFF557HEF, ENCFF629SOV 66123 ENCODE Processing Pipeline 6424fce93a90fcb7fbf9dd95473203a6 https://www.encodeproject.org/files/ENCFF735QIK/@@download/ENCFF735QIK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF680USE bam unfiltered alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF807MUK, ENCFF817VCN, ENCFF947BPK 8132003265 ENCODE Processing Pipeline 5042d7a038208000c17b8abb62329146 https://www.encodeproject.org/files/ENCFF680USE/@@download/ENCFF680USE.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF771OKD bam unfiltered alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF466RJA, ENCFF548XLM, ENCFF807MUK 8258866300 ENCODE Processing Pipeline cd77adad49dca2401f170dc4f6266927 https://www.encodeproject.org/files/ENCFF771OKD/@@download/ENCFF771OKD.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF466RJA fastq reads ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF548XLM 4274091097 Michael Snyder, Stanford ece3d3ec1d25e7a5cd146280d6abaea0 https://www.encodeproject.org/files/ENCFF466RJA/@@download/ENCFF466RJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF258YTR/, /files/ENCFF910GLH/ released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF548XLM fastq reads ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF466RJA 4257110483 Michael Snyder, Stanford 388aa52aa16240f79bdb9ace570ffcfd https://www.encodeproject.org/files/ENCFF548XLM/@@download/ENCFF548XLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF258YTR/, /files/ENCFF910GLH/ released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF947BPK fastq reads ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF817VCN 4041966766 Michael Snyder, Stanford d5d00124352ad776527e90769ee2b7e4 https://www.encodeproject.org/files/ENCFF947BPK/@@download/ENCFF947BPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF258YTR/, /files/ENCFF910GLH/ released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF817VCN fastq reads ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF947BPK 4015270451 Michael Snyder, Stanford 299bf1684ee87ae36ef2504aad7eca21 https://www.encodeproject.org/files/ENCFF817VCN/@@download/ENCFF817VCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF258YTR/, /files/ENCFF910GLH/ released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF746MMS bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF807MUK, ENCFF817VCN, ENCFF947BPK 5071212190 ENCODE Processing Pipeline bdbaba8bc3dc5059aeefc693887d3d23 https://www.encodeproject.org/files/ENCFF746MMS/@@download/ENCFF746MMS.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF968SMN bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF466RJA, ENCFF548XLM, ENCFF807MUK 4062031294 ENCODE Processing Pipeline 37d0c49610ba06f535a835a7917a1af3 https://www.encodeproject.org/files/ENCFF968SMN/@@download/ENCFF968SMN.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF148JBZ bigWig signal p-value ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF139VKC, ENCFF746MMS 1257203475 ENCODE Processing Pipeline 01e851b10a0b3f1cb65eff159c21b444 https://www.encodeproject.org/files/ENCFF148JBZ/@@download/ENCFF148JBZ.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF363LIG bigWig signal p-value ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF139VKC, ENCFF968SMN 1170079412 ENCODE Processing Pipeline 39d5da02e1c9cf5b621ac2d9121cdf3e https://www.encodeproject.org/files/ENCFF363LIG/@@download/ENCFF363LIG.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF513JDH bigWig fold change over control ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF139VKC, ENCFF746MMS, ENCFF968SMN 1808415892 ENCODE Processing Pipeline 25164b8f154a659bff3082d3ce2498e6 https://www.encodeproject.org/files/ENCFF513JDH/@@download/ENCFF513JDH.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF804AYO bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF139VKC, ENCFF968SMN 6110096 ENCODE Processing Pipeline 5794fc2a4328b650b1c513b414fb8761 https://www.encodeproject.org/files/ENCFF804AYO/@@download/ENCFF804AYO.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF331IWR bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF139VKC, ENCFF746MMS 6433989 ENCODE Processing Pipeline 8b87c22a1102272fd3558db70746d291 https://www.encodeproject.org/files/ENCFF331IWR/@@download/ENCFF331IWR.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF392QMP bed narrowPeak conservative idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF331IWR, ENCFF804AYO, ENCFF982UOO 19756 ENCODE Processing Pipeline 1432f04cc5fa7a467c568fc0ad045570 https://www.encodeproject.org/files/ENCFF392QMP/@@download/ENCFF392QMP.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF367RZF bigBed narrowPeak conservative idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF357ZSV 96838 ENCODE Processing Pipeline e7c0353028a907bbc9690d2b8070144f https://www.encodeproject.org/files/ENCFF367RZF/@@download/ENCFF367RZF.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched status, mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF772HOY bed narrowPeak optimal idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF331IWR, ENCFF804AYO, ENCFF982UOO 34602 ENCODE Processing Pipeline 8faf266dc68894e370a91f3389c162da https://www.encodeproject.org/files/ENCFF772HOY/@@download/ENCFF772HOY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF924AKU bigWig signal p-value ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF139VKC, ENCFF746MMS, ENCFF968SMN 1426863714 ENCODE Processing Pipeline 8cb7736bdab40edc548a62f864a3637d https://www.encodeproject.org/files/ENCFF924AKU/@@download/ENCFF924AKU.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF905SUP bigWig fold change over control ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF139VKC, ENCFF968SMN 1132175625 ENCODE Processing Pipeline dc15babcac021d6a1f0e57c78a208d7f https://www.encodeproject.org/files/ENCFF905SUP/@@download/ENCFF905SUP.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF244PQZ bigWig fold change over control ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF139VKC, ENCFF746MMS 1274831589 ENCODE Processing Pipeline fa29063068167a9ae993374260ed1ca1 https://www.encodeproject.org/files/ENCFF244PQZ/@@download/ENCFF244PQZ.bigWig hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF485XNX bigBed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF331IWR 11124876 ENCODE Processing Pipeline f44566812ee7d6bc331a85c65a149b74 https://www.encodeproject.org/files/ENCFF485XNX/@@download/ENCFF485XNX.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF982UOO bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF139VKC, ENCFF746MMS, ENCFF968SMN 6975338 ENCODE Processing Pipeline 859b1874edcfbdb6ff6c90c8071fb9af https://www.encodeproject.org/files/ENCFF982UOO/@@download/ENCFF982UOO.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF196MAF bigBed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF804AYO 11159886 ENCODE Processing Pipeline 20ee03c753cc4a63806323864bf4b371 https://www.encodeproject.org/files/ENCFF196MAF/@@download/ENCFF196MAF.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF556HRN bigBed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF982UOO 11055389 ENCODE Processing Pipeline 9c44c96f43152cd702e5c7c78ec6573d https://www.encodeproject.org/files/ENCFF556HRN/@@download/ENCFF556HRN.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF659LVV bigBed narrowPeak optimal idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF160VIW 122830 ENCODE Processing Pipeline ccb3f24529d4b57bac2db2536c9c6e2f https://www.encodeproject.org/files/ENCFF659LVV/@@download/ENCFF659LVV.bigBed hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched status, mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF848MVQ bam unfiltered alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF466RJA, ENCFF548XLM, ENCFF643CGH 8257428249 ENCODE Processing Pipeline 4114d1b9fc1126a7d740fe6ffa8b7f59 https://www.encodeproject.org/files/ENCFF848MVQ/@@download/ENCFF848MVQ.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF705TUS bam unfiltered alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF817VCN, ENCFF947BPK 8135811386 ENCODE Processing Pipeline 73d2b07474f42b6881504b971fc854f6 https://www.encodeproject.org/files/ENCFF705TUS/@@download/ENCFF705TUS.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF950PAH bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF466RJA, ENCFF548XLM, ENCFF643CGH 4064900050 ENCODE Processing Pipeline c70fdd7c8e582ee8536b77cc8d866999 https://www.encodeproject.org/files/ENCFF950PAH/@@download/ENCFF950PAH.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF535SSL bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF817VCN, ENCFF947BPK 5074239151 ENCODE Processing Pipeline 2095dee3e225513ea6f86d455075e130 https://www.encodeproject.org/files/ENCFF535SSL/@@download/ENCFF535SSL.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF929MKG bigWig signal p-value ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF816BIC, ENCFF950PAH 1171384357 ENCODE Processing Pipeline 448958de5f8774df50f265db764a4621 https://www.encodeproject.org/files/ENCFF929MKG/@@download/ENCFF929MKG.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF381RXH bigWig signal p-value ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF535SSL, ENCFF816BIC 1214858706 ENCODE Processing Pipeline 66fbb515ff88bcfc99384b7cf22b6107 https://www.encodeproject.org/files/ENCFF381RXH/@@download/ENCFF381RXH.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF278ZSN bigWig signal p-value ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF535SSL, ENCFF816BIC, ENCFF950PAH 1429472467 ENCODE Processing Pipeline bc76973bfce2723b2c954c2aa2fe3d96 https://www.encodeproject.org/files/ENCFF278ZSN/@@download/ENCFF278ZSN.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF736DKP bigWig fold change over control ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF816BIC, ENCFF950PAH 1118699044 ENCODE Processing Pipeline 0f1d0122d1168f340bdad58ac6c5526b https://www.encodeproject.org/files/ENCFF736DKP/@@download/ENCFF736DKP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF465DWO bigWig fold change over control ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF535SSL, ENCFF816BIC 1280852396 ENCODE Processing Pipeline 18af27249db7eee658798497ed0a8013 https://www.encodeproject.org/files/ENCFF465DWO/@@download/ENCFF465DWO.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF597XDB bigWig fold change over control ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF535SSL, ENCFF816BIC, ENCFF950PAH 1811069466 ENCODE Processing Pipeline 0cdc30daaeb9590fce22dd1c8376181b https://www.encodeproject.org/files/ENCFF597XDB/@@download/ENCFF597XDB.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF333QUP bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF535SSL, ENCFF816BIC 6277205 ENCODE Processing Pipeline 9d57ae2cdd0ee53fc4a015fbbf33fe7a https://www.encodeproject.org/files/ENCFF333QUP/@@download/ENCFF333QUP.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF643MHD bigBed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF333QUP 11135397 ENCODE Processing Pipeline e55fb27962aacc781c9dee456711b90f https://www.encodeproject.org/files/ENCFF643MHD/@@download/ENCFF643MHD.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF229CJE bigBed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF834LHN 11074277 ENCODE Processing Pipeline 7ecfdc42d81e237f058fa2fed7b21e0e https://www.encodeproject.org/files/ENCFF229CJE/@@download/ENCFF229CJE.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF687OMH bed narrowPeak optimal idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF333QUP, ENCFF419RSJ, ENCFF515APP, ENCFF834LHN 33536 ENCODE Processing Pipeline 17227c49db14dbcd7b6f29f75d53c412 https://www.encodeproject.org/files/ENCFF687OMH/@@download/ENCFF687OMH.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF279SQL bigBed narrowPeak optimal idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF687OMH 123200 ENCODE Processing Pipeline 2792afff45f5efe46adcf101d3d9eb71 https://www.encodeproject.org/files/ENCFF279SQL/@@download/ENCFF279SQL.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF515APP bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF816BIC, ENCFF950PAH 5958060 ENCODE Processing Pipeline 29f0063eb1bb8fb250c242f3c0a58d84 https://www.encodeproject.org/files/ENCFF515APP/@@download/ENCFF515APP.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF834LHN bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF535SSL, ENCFF816BIC, ENCFF950PAH 6886626 ENCODE Processing Pipeline 18c33709ae53bc4ecbbec3d6cc8406b7 https://www.encodeproject.org/files/ENCFF834LHN/@@download/ENCFF834LHN.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF756TWQ bigBed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF515APP 11163665 ENCODE Processing Pipeline d515e653a1ff276affc0837459fe69a0 https://www.encodeproject.org/files/ENCFF756TWQ/@@download/ENCFF756TWQ.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF149PSG bed narrowPeak conservative idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF333QUP, ENCFF419RSJ, ENCFF515APP, ENCFF834LHN 19600 ENCODE Processing Pipeline 875ae09e10e568aae0e80addbff2915e https://www.encodeproject.org/files/ENCFF149PSG/@@download/ENCFF149PSG.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF383ZCN bigBed narrowPeak conservative idr thresholded peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF149PSG 98676 ENCODE Processing Pipeline 61d791b78735b603690584933a8c477c https://www.encodeproject.org/files/ENCFF383ZCN/@@download/ENCFF383ZCN.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF634HPP bam unfiltered alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 100 ENCFF214MWL, ENCFF664YJD, ENCFF807MUK 6177746514 ENCODE Processing Pipeline 7563cb7b072d45ae2fe7a16b88a8da09 https://www.encodeproject.org/files/ENCFF634HPP/@@download/ENCFF634HPP.bam hg19 released ENCFF771ZUM bam unfiltered alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 100 ENCFF324VNE, ENCFF598OBQ, ENCFF807MUK 4456670446 ENCODE Processing Pipeline 64365aa032f77fbd87ce84e64871b9f8 https://www.encodeproject.org/files/ENCFF771ZUM/@@download/ENCFF771ZUM.bam hg19 released ENCFF598OBQ fastq reads ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 1 100 paired-ended 1 ENCFF324VNE 1969199303 Michael Snyder, Stanford a3f8113dcea69188bfb15c73d2ccee16 SRA:SRR5111786 https://www.encodeproject.org/files/ENCFF598OBQ/@@download/ENCFF598OBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF214MWL fastq reads ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 1 100 paired-ended 2 ENCFF664YJD 2861588553 Michael Snyder, Stanford a05a159eb6d4c5823f02fee699621c6b SRA:SRR5111785 https://www.encodeproject.org/files/ENCFF214MWL/@@download/ENCFF214MWL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF664YJD fastq reads ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 1 100 paired-ended 1 ENCFF214MWL 2747127472 Michael Snyder, Stanford 72920b0881dc3e715e191a381c43b410 SRA:SRR5111785 https://www.encodeproject.org/files/ENCFF664YJD/@@download/ENCFF664YJD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF324VNE fastq reads ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 1 100 paired-ended 2 ENCFF598OBQ 2054983420 Michael Snyder, Stanford 094daa008ad8a6de6aa9ca01d0bfbf9c SRA:SRR5111786 https://www.encodeproject.org/files/ENCFF324VNE/@@download/ENCFF324VNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF204DQZ bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 100 ENCFF214MWL, ENCFF664YJD, ENCFF807MUK 4867192478 ENCODE Processing Pipeline 1166992b99b8f16793987b404670ebda https://www.encodeproject.org/files/ENCFF204DQZ/@@download/ENCFF204DQZ.bam hg19 released ENCFF073BGI bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 100 ENCFF324VNE, ENCFF598OBQ, ENCFF807MUK 3928499421 ENCODE Processing Pipeline a9d4533d0f50b42c5715d8d6d0bc436e https://www.encodeproject.org/files/ENCFF073BGI/@@download/ENCFF073BGI.bam hg19 released ENCFF437QWN bigWig signal p-value ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF051LWI, ENCFF204DQZ 1119299148 ENCODE Processing Pipeline fa481f28a6ce44b8b84e5133e0067934 https://www.encodeproject.org/files/ENCFF437QWN/@@download/ENCFF437QWN.bigWig hg19 released ENCFF866XBU bigWig fold change over control ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF051LWI, ENCFF204DQZ 1244894870 ENCODE Processing Pipeline 78632a95ac47b75b9bbbc66357e67afd https://www.encodeproject.org/files/ENCFF866XBU/@@download/ENCFF866XBU.bigWig hg19 released ENCFF603HFB bam unfiltered alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 100 ENCFF324VNE, ENCFF598OBQ, ENCFF643CGH 4461680958 ENCODE Processing Pipeline 85c848f9c1b5ff28c58610d830c51dda https://www.encodeproject.org/files/ENCFF603HFB/@@download/ENCFF603HFB.bam GRCh38 released ENCFF878BKO bam unfiltered alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 100 ENCFF214MWL, ENCFF643CGH, ENCFF664YJD 6184667004 ENCODE Processing Pipeline 4adebec1b45ab242f42bf184a4f79e54 https://www.encodeproject.org/files/ENCFF878BKO/@@download/ENCFF878BKO.bam GRCh38 released ENCFF769DDY bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 100 ENCFF324VNE, ENCFF598OBQ, ENCFF643CGH 3931401851 ENCODE Processing Pipeline 2505b77d11ca0befa372363d4c6f08af https://www.encodeproject.org/files/ENCFF769DDY/@@download/ENCFF769DDY.bam GRCh38 released ENCFF221CPW bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 100 ENCFF214MWL, ENCFF643CGH, ENCFF664YJD 4870220233 ENCODE Processing Pipeline 2db17521cc3875be5a0f76a9f08a7a1e https://www.encodeproject.org/files/ENCFF221CPW/@@download/ENCFF221CPW.bam GRCh38 released ENCFF835XYY bigWig signal p-value ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF769DDY, ENCFF910IKB 1320006965 ENCODE Processing Pipeline 0dc62a67015b6447e9a780b6dc58a2bf https://www.encodeproject.org/files/ENCFF835XYY/@@download/ENCFF835XYY.bigWig GRCh38 released ENCFF559BHR bigWig signal p-value ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF221CPW, ENCFF227IZS 1106793658 ENCODE Processing Pipeline b41840da1d5d9b7d12fa7ebe00a4bedf https://www.encodeproject.org/files/ENCFF559BHR/@@download/ENCFF559BHR.bigWig GRCh38 released ENCFF753GGN bigWig signal p-value ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF221CPW, ENCFF227IZS, ENCFF769DDY, ENCFF910IKB 2048279313 ENCODE Processing Pipeline 9ecaa09a8bf351d4b12c65eceb63bd76 https://www.encodeproject.org/files/ENCFF753GGN/@@download/ENCFF753GGN.bigWig GRCh38 released ENCFF899ACG bigWig fold change over control ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF769DDY, ENCFF910IKB 1205124223 ENCODE Processing Pipeline d844ac24fef7c4d9f1ba87715a1421aa https://www.encodeproject.org/files/ENCFF899ACG/@@download/ENCFF899ACG.bigWig GRCh38 released ENCFF014QZX bigWig fold change over control ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF221CPW, ENCFF227IZS 1259948931 ENCODE Processing Pipeline ae42ea34a9a4c7419cf80291ca56a5fb https://www.encodeproject.org/files/ENCFF014QZX/@@download/ENCFF014QZX.bigWig GRCh38 released ENCFF422WMR bigWig fold change over control ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF221CPW, ENCFF227IZS, ENCFF769DDY, ENCFF910IKB 2157765376 ENCODE Processing Pipeline 9fda8e8ddbb6a3076b5d3c2c9fbb6c09 https://www.encodeproject.org/files/ENCFF422WMR/@@download/ENCFF422WMR.bigWig GRCh38 released ENCFF118MIQ bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF769DDY, ENCFF910IKB 6924357 ENCODE Processing Pipeline 754ee193f4606544cb76668109fb26e8 https://www.encodeproject.org/files/ENCFF118MIQ/@@download/ENCFF118MIQ.bed.gz GRCh38 released ENCFF289CCG bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF221CPW, ENCFF227IZS 7079306 ENCODE Processing Pipeline 6f7c8dca19181e7bef59866421bcf054 https://www.encodeproject.org/files/ENCFF289CCG/@@download/ENCFF289CCG.bed.gz GRCh38 released ENCFF593YVU bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF221CPW, ENCFF227IZS, ENCFF769DDY, ENCFF910IKB 7209233 ENCODE Processing Pipeline a63254c14d64305c9c90d1f3126723ee https://www.encodeproject.org/files/ENCFF593YVU/@@download/ENCFF593YVU.bed.gz GRCh38 released ENCFF417WDT bigBed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF118MIQ 12789687 ENCODE Processing Pipeline fa9c246cc6a4b522ad7c63f8fc7b8c5f https://www.encodeproject.org/files/ENCFF417WDT/@@download/ENCFF417WDT.bigBed GRCh38 released ENCFF881EOY bigBed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF289CCG 12671311 ENCODE Processing Pipeline 19e63f4b5bae0f2d8dba582692783166 https://www.encodeproject.org/files/ENCFF881EOY/@@download/ENCFF881EOY.bigBed GRCh38 released ENCFF292RMD bigBed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF593YVU 12479112 ENCODE Processing Pipeline 915db738bd39baf9920f7d6109a0fd8d https://www.encodeproject.org/files/ENCFF292RMD/@@download/ENCFF292RMD.bigBed GRCh38 released ENCFF428RTI bed narrowPeak conservative idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF118MIQ, ENCFF289CCG, ENCFF419RSJ, ENCFF593YVU 144033 ENCODE Processing Pipeline ca643415cb59762fab086b5a51da4b48 https://www.encodeproject.org/files/ENCFF428RTI/@@download/ENCFF428RTI.bed.gz GRCh38 released ENCFF497NLG bigBed narrowPeak conservative idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF428RTI 336108 ENCODE Processing Pipeline d8f2e4a7313165bf54b12c59b53eaf09 https://www.encodeproject.org/files/ENCFF497NLG/@@download/ENCFF497NLG.bigBed GRCh38 released ENCFF297WMY bed narrowPeak optimal idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF118MIQ, ENCFF289CCG, ENCFF419RSJ, ENCFF593YVU 216647 ENCODE Processing Pipeline 3606e415e91b6de4450102636c9a356a https://www.encodeproject.org/files/ENCFF297WMY/@@download/ENCFF297WMY.bed.gz GRCh38 released ENCFF161XWV bigBed narrowPeak optimal idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF297WMY 453034 ENCODE Processing Pipeline f075d3ced8da3db5f2c74227c85c8522 https://www.encodeproject.org/files/ENCFF161XWV/@@download/ENCFF161XWV.bigBed GRCh38 released ENCFF954OKQ bigWig signal p-value ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF073BGI, ENCFF581ZJL 997512375 ENCODE Processing Pipeline c1bf85012f1f2bd1787d9082b1555dc7 https://www.encodeproject.org/files/ENCFF954OKQ/@@download/ENCFF954OKQ.bigWig hg19 released ENCFF083TQV bigWig fold change over control ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF073BGI, ENCFF581ZJL 1158107846 ENCODE Processing Pipeline bfc5dde36a2997e97482f5b7d8498008 https://www.encodeproject.org/files/ENCFF083TQV/@@download/ENCFF083TQV.bigWig hg19 released ENCFF606AWH bigWig fold change over control ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF051LWI, ENCFF073BGI, ENCFF204DQZ, ENCFF581ZJL 2156072319 ENCODE Processing Pipeline 03fcd512665ca51be2c2c5cecaedea9b https://www.encodeproject.org/files/ENCFF606AWH/@@download/ENCFF606AWH.bigWig hg19 released ENCFF875MXE bigWig signal p-value ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF051LWI, ENCFF073BGI, ENCFF204DQZ, ENCFF581ZJL 2059199551 ENCODE Processing Pipeline 692718155ab981d53242025a18629d24 https://www.encodeproject.org/files/ENCFF875MXE/@@download/ENCFF875MXE.bigWig hg19 released ENCFF676QZG bigBed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF328KFN 12658206 ENCODE Processing Pipeline 0f3f7dcc8ba0540f9ffbc298f309917e https://www.encodeproject.org/files/ENCFF676QZG/@@download/ENCFF676QZG.bigBed hg19 released ENCFF942DKZ bigBed narrowPeak conservative idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF926PTQ 331055 ENCODE Processing Pipeline 051222c1235d7e8cf28fe3a5dffca04e https://www.encodeproject.org/files/ENCFF942DKZ/@@download/ENCFF942DKZ.bigBed hg19 released ENCFF415ZVO bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF051LWI, ENCFF073BGI, ENCFF204DQZ, ENCFF581ZJL 7200902 ENCODE Processing Pipeline 1c2c73dcaf3d5995047ec9d24c4ed272 https://www.encodeproject.org/files/ENCFF415ZVO/@@download/ENCFF415ZVO.bed.gz hg19 released ENCFF701JMF bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF073BGI, ENCFF581ZJL 6933666 ENCODE Processing Pipeline 1620ca7375f85882e35e913c96ae9ec5 https://www.encodeproject.org/files/ENCFF701JMF/@@download/ENCFF701JMF.bed.gz hg19 released ENCFF926PTQ bed narrowPeak conservative idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF328KFN, ENCFF415ZVO, ENCFF701JMF 142211 ENCODE Processing Pipeline 115d779926062d7aa719aec177231932 https://www.encodeproject.org/files/ENCFF926PTQ/@@download/ENCFF926PTQ.bed.gz hg19 released ENCFF328KFN bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF051LWI, ENCFF204DQZ 7070560 ENCODE Processing Pipeline d09fa112a2f46a52ff767bac569d3e8d https://www.encodeproject.org/files/ENCFF328KFN/@@download/ENCFF328KFN.bed.gz hg19 released ENCFF032USN bigBed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF415ZVO 12468355 ENCODE Processing Pipeline 166a0a5276ebc26bc37f8fe47853ebac https://www.encodeproject.org/files/ENCFF032USN/@@download/ENCFF032USN.bigBed hg19 released ENCFF849ZUF bed narrowPeak optimal idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF328KFN, ENCFF415ZVO, ENCFF701JMF 214540 ENCODE Processing Pipeline 5889d9be33d5b555b97ac8b885edd835 https://www.encodeproject.org/files/ENCFF849ZUF/@@download/ENCFF849ZUF.bed.gz hg19 released ENCFF197KYC bigBed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF701JMF 12767001 ENCODE Processing Pipeline f23a1b892e4d58b488cf69a34af9d947 https://www.encodeproject.org/files/ENCFF197KYC/@@download/ENCFF197KYC.bigBed hg19 released ENCFF836FFC bigBed narrowPeak optimal idr thresholded peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF849ZUF 447540 ENCODE Processing Pipeline 6c0d01b0b29a092cd4b6d25fe55e2d61 https://www.encodeproject.org/files/ENCFF836FFC/@@download/ENCFF836FFC.bigBed hg19 released ENCFF068NIQ fastq reads ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF844DFN 2911119234 Michael Snyder, Stanford 9f38b2383931a222a358f23feec467fc https://www.encodeproject.org/files/ENCFF068NIQ/@@download/ENCFF068NIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF112XAK/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF844DFN fastq reads ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF068NIQ 3092429277 Michael Snyder, Stanford 206fc201f70cb85df023e5d023fd9410 https://www.encodeproject.org/files/ENCFF844DFN/@@download/ENCFF844DFN.fastq.gz Illumina HiSeq 4000 /files/ENCFF748PLK/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF229BOO fastq reads ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 2 100 paired-ended 2 ENCFF599ZRC 3847978358 Michael Snyder, Stanford c34ec61ccb6dc79072499634db5b79eb https://www.encodeproject.org/files/ENCFF229BOO/@@download/ENCFF229BOO.fastq.gz Illumina HiSeq 4000 /files/ENCFF856ZLL/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF599ZRC fastq reads ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 2 100 paired-ended 1 ENCFF229BOO 3458371391 Michael Snyder, Stanford 77af1cc6c5b7f1b9525ed85bf85d81fd https://www.encodeproject.org/files/ENCFF599ZRC/@@download/ENCFF599ZRC.fastq.gz Illumina HiSeq 4000 /files/ENCFF185HSW/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF038YDB bam unfiltered alignments ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF068NIQ, ENCFF229BOO, ENCFF599ZRC, ENCFF643CGH, ENCFF844DFN 11012168883 ENCODE Processing Pipeline cad91e74278437d95857e5404d7c0173 https://www.encodeproject.org/files/ENCFF038YDB/@@download/ENCFF038YDB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF764QRF bam unfiltered alignments ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF068NIQ, ENCFF229BOO, ENCFF599ZRC, ENCFF807MUK, ENCFF844DFN 11029273708 ENCODE Processing Pipeline e473afcedbe2529bed4422fc980dfb37 https://www.encodeproject.org/files/ENCFF764QRF/@@download/ENCFF764QRF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF006EYT bam alignments ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF068NIQ, ENCFF229BOO, ENCFF599ZRC, ENCFF643CGH, ENCFF844DFN 5050160064 ENCODE Processing Pipeline dfa6ff1f245fb358e3ddd9ad249d73b5 https://www.encodeproject.org/files/ENCFF006EYT/@@download/ENCFF006EYT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF352KPP bam alignments ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF068NIQ, ENCFF229BOO, ENCFF599ZRC, ENCFF807MUK, ENCFF844DFN 5040450900 ENCODE Processing Pipeline 2251cfdd890f2f4de9b0419900137a0d https://www.encodeproject.org/files/ENCFF352KPP/@@download/ENCFF352KPP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF359KRZ bam unfiltered alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF583IRH, ENCFF600EDO, ENCFF807MUK 5073920195 ENCODE Processing Pipeline fc7b53f8c4fb9e2f5eedab53709f97ff https://www.encodeproject.org/files/ENCFF359KRZ/@@download/ENCFF359KRZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF676ZFB bam unfiltered alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF429KAX, ENCFF807MUK, ENCFF887TVH 4182328038 ENCODE Processing Pipeline aa97d004d9061b89c659b6f4ae541fe2 https://www.encodeproject.org/files/ENCFF676ZFB/@@download/ENCFF676ZFB.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF429KAX fastq reads ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF887TVH 1939627558 Michael Snyder, Stanford 6e6c34cc6e57b76e393f84a0e29ec93b SRA:SRR5111088 https://www.encodeproject.org/files/ENCFF429KAX/@@download/ENCFF429KAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF600EDO fastq reads ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF583IRH 2451046861 Michael Snyder, Stanford eb0d19d2b0c9da658a959b72afc7cbc0 SRA:SRR5111087 https://www.encodeproject.org/files/ENCFF600EDO/@@download/ENCFF600EDO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF887TVH fastq reads ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF429KAX 1967694806 Michael Snyder, Stanford 0bd42a11feb24f9dd92ea4663bbd2e02 SRA:SRR5111088 https://www.encodeproject.org/files/ENCFF887TVH/@@download/ENCFF887TVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF583IRH fastq reads ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF600EDO 2369968909 Michael Snyder, Stanford c673e5bbc9d533f36b1179c60452d6bd SRA:SRR5111087 https://www.encodeproject.org/files/ENCFF583IRH/@@download/ENCFF583IRH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF989OSX bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF429KAX, ENCFF807MUK, ENCFF887TVH 3202535359 ENCODE Processing Pipeline 45b9f6977ba52a1c75d0bebbb9678ad8 https://www.encodeproject.org/files/ENCFF989OSX/@@download/ENCFF989OSX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF853EMP bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF583IRH, ENCFF600EDO, ENCFF807MUK 3401950065 ENCODE Processing Pipeline 6eae94a18a68352a92be423af4199b14 https://www.encodeproject.org/files/ENCFF853EMP/@@download/ENCFF853EMP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF125UNP bigWig signal p-value ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF989OSX 1012548431 ENCODE Processing Pipeline 00bab13b85ca4e7b232dbf41b48626ae https://www.encodeproject.org/files/ENCFF125UNP/@@download/ENCFF125UNP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF547DHR bigWig signal p-value ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF853EMP 1061586950 ENCODE Processing Pipeline 4e2c21ca2d2fca4b8b1d760b9f129fb9 https://www.encodeproject.org/files/ENCFF547DHR/@@download/ENCFF547DHR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF515WMP bigWig signal p-value ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF853EMP, ENCFF989OSX 1877699558 ENCODE Processing Pipeline e0f85aa41284c0bd15a33c45f250d7f7 https://www.encodeproject.org/files/ENCFF515WMP/@@download/ENCFF515WMP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF017MTO bigWig fold change over control ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF989OSX 1025478043 ENCODE Processing Pipeline f9dba1cd2e9af7db041f6908d5eba6bd https://www.encodeproject.org/files/ENCFF017MTO/@@download/ENCFF017MTO.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF581LOB bigWig fold change over control ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF853EMP 973386894 ENCODE Processing Pipeline 48bdb4624f808255a6cc6ab3fcf44276 https://www.encodeproject.org/files/ENCFF581LOB/@@download/ENCFF581LOB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF071USV bigWig fold change over control ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF853EMP, ENCFF989OSX 1906649010 ENCODE Processing Pipeline e001ef4891281512f53c83530f16d4c4 https://www.encodeproject.org/files/ENCFF071USV/@@download/ENCFF071USV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF860KMP bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF853EMP 6406002 ENCODE Processing Pipeline d30d79c50d0e12b2f2743ff47d3af71d https://www.encodeproject.org/files/ENCFF860KMP/@@download/ENCFF860KMP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF581TVI bigBed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF222PPL 13344627 ENCODE Processing Pipeline a33cec70325aefced3c0a5d6b7fcc1ac https://www.encodeproject.org/files/ENCFF581TVI/@@download/ENCFF581TVI.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF222PPL bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF989OSX 6412170 ENCODE Processing Pipeline f703f936ce9333620ca52565db1f4a11 https://www.encodeproject.org/files/ENCFF222PPL/@@download/ENCFF222PPL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF786MKH bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF853EMP, ENCFF989OSX 7165721 ENCODE Processing Pipeline f5b2581e60dd754101ff2cf93317003e https://www.encodeproject.org/files/ENCFF786MKH/@@download/ENCFF786MKH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF915IZB bigBed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF786MKH 13178532 ENCODE Processing Pipeline 13fa1017e7eee074b47a7d8a5dfe8fe6 https://www.encodeproject.org/files/ENCFF915IZB/@@download/ENCFF915IZB.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF206AXD bigBed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF860KMP 13335492 ENCODE Processing Pipeline 2f782c2dc8090aa9a121a1b7c55bef3e https://www.encodeproject.org/files/ENCFF206AXD/@@download/ENCFF206AXD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF635ZWL bam unfiltered alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF429KAX, ENCFF643CGH, ENCFF887TVH 4185264165 ENCODE Processing Pipeline 2a51cbc849d48ed6118a365c4d141d52 https://www.encodeproject.org/files/ENCFF635ZWL/@@download/ENCFF635ZWL.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF180TDZ bam unfiltered alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF583IRH, ENCFF600EDO, ENCFF643CGH 5076922561 ENCODE Processing Pipeline 1d4547908597850f2923250dcf481312 https://www.encodeproject.org/files/ENCFF180TDZ/@@download/ENCFF180TDZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF502NAY bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF429KAX, ENCFF643CGH, ENCFF887TVH 3203567462 ENCODE Processing Pipeline bbda9ec8bc87ae5396fbf47bd13eba9d https://www.encodeproject.org/files/ENCFF502NAY/@@download/ENCFF502NAY.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046ACV bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF583IRH, ENCFF600EDO, ENCFF643CGH 3403164493 ENCODE Processing Pipeline 06f610e04393700af7d812a1feb2d1ca https://www.encodeproject.org/files/ENCFF046ACV/@@download/ENCFF046ACV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF825EYJ bigWig signal p-value ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF502NAY, ENCFF910IKB 1017841571 ENCODE Processing Pipeline c64015a1aa3a140df7a25258ab8e9f74 https://www.encodeproject.org/files/ENCFF825EYJ/@@download/ENCFF825EYJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF187FHI bigWig signal p-value ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF046ACV, ENCFF227IZS 1063139900 ENCODE Processing Pipeline afd09f59982fe9ff0f70ffe73f56cc6a https://www.encodeproject.org/files/ENCFF187FHI/@@download/ENCFF187FHI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF453AFB bigWig signal p-value ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF046ACV, ENCFF227IZS, ENCFF502NAY, ENCFF910IKB 1900440338 ENCODE Processing Pipeline af585b6eefc1cb588450fafda540e9e8 https://www.encodeproject.org/files/ENCFF453AFB/@@download/ENCFF453AFB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF131QDP bigWig fold change over control ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF502NAY, ENCFF910IKB 1017029930 ENCODE Processing Pipeline 316541a351ff23526952caddfdf50fa5 https://www.encodeproject.org/files/ENCFF131QDP/@@download/ENCFF131QDP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF578CUN bigWig fold change over control ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF046ACV, ENCFF227IZS 970750890 ENCODE Processing Pipeline b5928b51c1c6c52e8dce59c938605b77 https://www.encodeproject.org/files/ENCFF578CUN/@@download/ENCFF578CUN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF883YBM bigWig fold change over control ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF046ACV, ENCFF227IZS, ENCFF502NAY, ENCFF910IKB 1907139044 ENCODE Processing Pipeline 59ebb2a7d6714c3e437f5cada5342f61 https://www.encodeproject.org/files/ENCFF883YBM/@@download/ENCFF883YBM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF524BVG bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF502NAY, ENCFF910IKB 6285306 ENCODE Processing Pipeline c19dae0e19a1dae0cd68b54ed60295f6 https://www.encodeproject.org/files/ENCFF524BVG/@@download/ENCFF524BVG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF913QZG bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF046ACV, ENCFF227IZS 6280116 ENCODE Processing Pipeline e466bc2e046a0bd805a23d8b9aefe247 https://www.encodeproject.org/files/ENCFF913QZG/@@download/ENCFF913QZG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF982UTK bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF046ACV, ENCFF227IZS, ENCFF502NAY, ENCFF910IKB 7127557 ENCODE Processing Pipeline 014ba2bc893f64ca2a21fe2e666a3a9e https://www.encodeproject.org/files/ENCFF982UTK/@@download/ENCFF982UTK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF974OJF bigBed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF524BVG 13347005 ENCODE Processing Pipeline be438a21285af63dfebd66bcbd8e09e0 https://www.encodeproject.org/files/ENCFF974OJF/@@download/ENCFF974OJF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF110IQV bigBed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF913QZG 13328826 ENCODE Processing Pipeline b8b3f81e1da0d0384fa71985c865c63b https://www.encodeproject.org/files/ENCFF110IQV/@@download/ENCFF110IQV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF135CCN bigBed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF982UTK 13199757 ENCODE Processing Pipeline d451107a575355375ef40e79848aa0cc https://www.encodeproject.org/files/ENCFF135CCN/@@download/ENCFF135CCN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF558HHY bed narrowPeak conservative idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF524BVG, ENCFF913QZG, ENCFF982UTK 157189 ENCODE Processing Pipeline 3eb93e46e6d41c359a5d4174b89899ef https://www.encodeproject.org/files/ENCFF558HHY/@@download/ENCFF558HHY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF372JZP bigBed narrowPeak conservative idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF558HHY 346650 ENCODE Processing Pipeline 4079e3af46ebc3ea4f0b9b4ae330f50f https://www.encodeproject.org/files/ENCFF372JZP/@@download/ENCFF372JZP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF010OOE bed narrowPeak optimal idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF524BVG, ENCFF913QZG, ENCFF982UTK 209209 ENCODE Processing Pipeline c13baaaec9ca12f5c386ff6409336470 https://www.encodeproject.org/files/ENCFF010OOE/@@download/ENCFF010OOE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF237ZXL bigBed narrowPeak optimal idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF010OOE 422076 ENCODE Processing Pipeline bf9f78c454930d1411ece47f727b85da https://www.encodeproject.org/files/ENCFF237ZXL/@@download/ENCFF237ZXL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF419FNX bed narrowPeak conservative idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF222PPL, ENCFF786MKH, ENCFF860KMP 129320 ENCODE Processing Pipeline 0deb1f296b994a9298e1eb724825fc43 https://www.encodeproject.org/files/ENCFF419FNX/@@download/ENCFF419FNX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF839NZU bigBed narrowPeak conservative idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419FNX 248835 ENCODE Processing Pipeline fcb6ade099adfa1ccb7ae3fdac3f69fc https://www.encodeproject.org/files/ENCFF839NZU/@@download/ENCFF839NZU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF676NPW bed narrowPeak optimal idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF222PPL, ENCFF786MKH, ENCFF860KMP 171892 ENCODE Processing Pipeline b2426299acedb3521638e6d425f68ba5 https://www.encodeproject.org/files/ENCFF676NPW/@@download/ENCFF676NPW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF173TGY bigBed narrowPeak optimal idr thresholded peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF676NPW 369532 ENCODE Processing Pipeline 04a0fc47056bd8de9f96bad9280d5582 https://www.encodeproject.org/files/ENCFF173TGY/@@download/ENCFF173TGY.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF592FPS bam unfiltered alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 100 ENCFF378WJL, ENCFF718GJY, ENCFF807MUK 6283864385 ENCODE Processing Pipeline 0928489dc4c1adbf6d81e9ef54251c50 https://www.encodeproject.org/files/ENCFF592FPS/@@download/ENCFF592FPS.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF332GKH bam unfiltered alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023JKK, ENCFF807MUK, ENCFF882DKX 3842806080 ENCODE Processing Pipeline d7283cc28a8a1bfbef257bb855803299 https://www.encodeproject.org/files/ENCFF332GKH/@@download/ENCFF332GKH.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF378WJL fastq reads ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF718GJY 2926801748 Michael Snyder, Stanford 6661003bbb4e548e506b7000df42e4d6 https://www.encodeproject.org/files/ENCFF378WJL/@@download/ENCFF378WJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF882DKX fastq reads ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 1 ENCFF023JKK 1681151436 Michael Snyder, Stanford 5d9ffb678cab96e61ca3392a3e2705d4 https://www.encodeproject.org/files/ENCFF882DKX/@@download/ENCFF882DKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF023JKK fastq reads ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 1 100 paired-ended 2 ENCFF882DKX 1742532286 Michael Snyder, Stanford 119702f3999c0385a2e935a0cf4a16de https://www.encodeproject.org/files/ENCFF023JKK/@@download/ENCFF023JKK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF718GJY fastq reads ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF378WJL 2955163374 Michael Snyder, Stanford fa05bb2ae76929e2d24a276a21648362 https://www.encodeproject.org/files/ENCFF718GJY/@@download/ENCFF718GJY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF763YKD bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023JKK, ENCFF807MUK, ENCFF882DKX 3369954043 ENCODE Processing Pipeline bf18b624fca8d9582d1a24b416c6b4c4 https://www.encodeproject.org/files/ENCFF763YKD/@@download/ENCFF763YKD.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF988PYL bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 100 ENCFF378WJL, ENCFF718GJY, ENCFF807MUK 5133059846 ENCODE Processing Pipeline 34393d649335746fbd7c416a4ad19d9d https://www.encodeproject.org/files/ENCFF988PYL/@@download/ENCFF988PYL.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF803AMM bigWig signal p-value ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF988PYL, ENCFF999EQI 1157782993 ENCODE Processing Pipeline d09da0c918fac144bf8731c84b0c05ac https://www.encodeproject.org/files/ENCFF803AMM/@@download/ENCFF803AMM.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF476FTP bigWig signal p-value ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF449NNE, ENCFF763YKD 1068573877 ENCODE Processing Pipeline 89a1a28bfba9c7caeb4be8d97cec6ac6 https://www.encodeproject.org/files/ENCFF476FTP/@@download/ENCFF476FTP.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF599RRA bigWig signal p-value ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF449NNE, ENCFF763YKD, ENCFF988PYL, ENCFF999EQI 1641002680 ENCODE Processing Pipeline 1cbb772aa5144ed777b252fdd3f980f1 https://www.encodeproject.org/files/ENCFF599RRA/@@download/ENCFF599RRA.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF133ADC bigWig fold change over control ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF988PYL, ENCFF999EQI 1230449000 ENCODE Processing Pipeline c77974ea3dcd0dccc624777173de1a33 https://www.encodeproject.org/files/ENCFF133ADC/@@download/ENCFF133ADC.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF515RPQ bigWig fold change over control ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF449NNE, ENCFF763YKD 1035345728 ENCODE Processing Pipeline 6500b1d4aa141066a3e62988c9c223a6 https://www.encodeproject.org/files/ENCFF515RPQ/@@download/ENCFF515RPQ.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF946GRK bigWig fold change over control ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF449NNE, ENCFF763YKD, ENCFF988PYL, ENCFF999EQI 2072462629 ENCODE Processing Pipeline bbb5067be5736ba02d3b7109f9627171 https://www.encodeproject.org/files/ENCFF946GRK/@@download/ENCFF946GRK.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF601QAF bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF449NNE, ENCFF763YKD 6355579 ENCODE Processing Pipeline 67cf5e9e402bc8ad182bb2c853445d4f https://www.encodeproject.org/files/ENCFF601QAF/@@download/ENCFF601QAF.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF360EGT bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF988PYL, ENCFF999EQI 6770974 ENCODE Processing Pipeline 026bc599ba6288114d3db670ca20dea2 https://www.encodeproject.org/files/ENCFF360EGT/@@download/ENCFF360EGT.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF100FCL bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF449NNE, ENCFF763YKD, ENCFF988PYL, ENCFF999EQI 7175562 ENCODE Processing Pipeline 374e1ce2b3b842a0a367d332c451078c https://www.encodeproject.org/files/ENCFF100FCL/@@download/ENCFF100FCL.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF944CFB bigBed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF360EGT 13265583 ENCODE Processing Pipeline eb333e4adcea437f07f2daa64e0f3b20 https://www.encodeproject.org/files/ENCFF944CFB/@@download/ENCFF944CFB.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF589HLO bigBed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF100FCL 13356984 ENCODE Processing Pipeline 9f75bf3758ef40fff7f942e40b1ad454 https://www.encodeproject.org/files/ENCFF589HLO/@@download/ENCFF589HLO.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF430JVR bigBed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF601QAF 11363667 ENCODE Processing Pipeline a9c7a69298afe76dc0c184c0c3c3817c https://www.encodeproject.org/files/ENCFF430JVR/@@download/ENCFF430JVR.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF066GME bam unfiltered alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023JKK, ENCFF643CGH, ENCFF882DKX 3849840024 ENCODE Processing Pipeline a517ccb4841e8935cae0d43f73bc1d5e https://www.encodeproject.org/files/ENCFF066GME/@@download/ENCFF066GME.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF138KOR bam unfiltered alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 100 ENCFF378WJL, ENCFF643CGH, ENCFF718GJY 6293429356 ENCODE Processing Pipeline 4698d7f9305c77ca02e13e7bf2f90456 https://www.encodeproject.org/files/ENCFF138KOR/@@download/ENCFF138KOR.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF527HHS bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023JKK, ENCFF643CGH, ENCFF882DKX 3374876393 ENCODE Processing Pipeline 818593dfd28ef021f7dadb1941290333 https://www.encodeproject.org/files/ENCFF527HHS/@@download/ENCFF527HHS.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF975MAG bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 100 ENCFF378WJL, ENCFF643CGH, ENCFF718GJY 5139985180 ENCODE Processing Pipeline ae635667fb8f6010af9226ba31e3b426 https://www.encodeproject.org/files/ENCFF975MAG/@@download/ENCFF975MAG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF424GWT bigWig signal p-value ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF950AXC, ENCFF975MAG 968184860 ENCODE Processing Pipeline c179a192beaa99b7a5e2b7e7f603a558 https://www.encodeproject.org/files/ENCFF424GWT/@@download/ENCFF424GWT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF072VDL bigWig signal p-value ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF190EPQ, ENCFF527HHS 927274759 ENCODE Processing Pipeline 164f60b85db8bc113f6270319645bbaf https://www.encodeproject.org/files/ENCFF072VDL/@@download/ENCFF072VDL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF130ZCT bigWig signal p-value ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF190EPQ, ENCFF527HHS, ENCFF950AXC, ENCFF975MAG 1673433697 ENCODE Processing Pipeline 39463100011c29a7981df1f1276571b4 https://www.encodeproject.org/files/ENCFF130ZCT/@@download/ENCFF130ZCT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF164LII bigWig fold change over control ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF950AXC, ENCFF975MAG 1233829585 ENCODE Processing Pipeline b9e43309cb1ccbabe9634545a6b58939 https://www.encodeproject.org/files/ENCFF164LII/@@download/ENCFF164LII.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF415JGB bigWig fold change over control ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF190EPQ, ENCFF527HHS 1037877602 ENCODE Processing Pipeline 96592111631407910569716ca3519c49 https://www.encodeproject.org/files/ENCFF415JGB/@@download/ENCFF415JGB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF242HGF bigWig fold change over control ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF190EPQ, ENCFF527HHS, ENCFF950AXC, ENCFF975MAG 2062379012 ENCODE Processing Pipeline d7398e7b60098564c135bbe64e1e3116 https://www.encodeproject.org/files/ENCFF242HGF/@@download/ENCFF242HGF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF621FLL bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF190EPQ, ENCFF527HHS 6243007 ENCODE Processing Pipeline 1fadb5534b10fe1f0cf7aa83d4f715f1 https://www.encodeproject.org/files/ENCFF621FLL/@@download/ENCFF621FLL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF618RYZ bigBed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 ENCFF621FLL 11418368 ENCODE Processing Pipeline b7a13f27e43a07157b0e61ae4dd8ee17 https://www.encodeproject.org/files/ENCFF618RYZ/@@download/ENCFF618RYZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF958ESK bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF950AXC, ENCFF975MAG 6741536 ENCODE Processing Pipeline 96f2cfbff8ef5b96fb4074c248053352 https://www.encodeproject.org/files/ENCFF958ESK/@@download/ENCFF958ESK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF641NDI bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF190EPQ, ENCFF527HHS, ENCFF950AXC, ENCFF975MAG 7212431 ENCODE Processing Pipeline e4c1e6d91620007702e96164b692d067 https://www.encodeproject.org/files/ENCFF641NDI/@@download/ENCFF641NDI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002STM bigBed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF958ESK 13351503 ENCODE Processing Pipeline 1a7d1aee0093656f7df35b61f4ed76c0 https://www.encodeproject.org/files/ENCFF002STM/@@download/ENCFF002STM.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF852OXY bigBed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF641NDI 13430171 ENCODE Processing Pipeline 1919781c1cf03f58115b86f6f50704b9 https://www.encodeproject.org/files/ENCFF852OXY/@@download/ENCFF852OXY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF035ZFO bed narrowPeak optimal idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF419RSJ, ENCFF621FLL, ENCFF641NDI, ENCFF958ESK 638371 ENCODE Processing Pipeline 0fc1f07770cf0afa29f60033e59b2ce5 https://www.encodeproject.org/files/ENCFF035ZFO/@@download/ENCFF035ZFO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF344JCK bed narrowPeak conservative idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF419RSJ, ENCFF621FLL, ENCFF641NDI, ENCFF958ESK 513067 ENCODE Processing Pipeline cb77105d0f311a63aadc963f1acee4c0 https://www.encodeproject.org/files/ENCFF344JCK/@@download/ENCFF344JCK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF690FMN bigBed narrowPeak conservative idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF344JCK 1013898 ENCODE Processing Pipeline d0e62f4f8a3cad51370f2e886ecaba16 https://www.encodeproject.org/files/ENCFF690FMN/@@download/ENCFF690FMN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF622QJP bigBed narrowPeak optimal idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF035ZFO 1209926 ENCODE Processing Pipeline 68b3c907f0d7bce78dcf56de6885f52d https://www.encodeproject.org/files/ENCFF622QJP/@@download/ENCFF622QJP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF363QMG bed narrowPeak optimal idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF100FCL, ENCFF360EGT, ENCFF601QAF 538846 ENCODE Processing Pipeline 5d8eac327034da7d5ea1e8c5f839c912 https://www.encodeproject.org/files/ENCFF363QMG/@@download/ENCFF363QMG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF583YAO bed narrowPeak conservative idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF001TDO, ENCFF100FCL, ENCFF360EGT, ENCFF601QAF 431146 ENCODE Processing Pipeline c4c2ca48d65694101ea8f874ee727a79 https://www.encodeproject.org/files/ENCFF583YAO/@@download/ENCFF583YAO.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF695GEN bigBed narrowPeak conservative idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF583YAO 899999 ENCODE Processing Pipeline b18a8859cafb40cff02d84ddee066373 https://www.encodeproject.org/files/ENCFF695GEN/@@download/ENCFF695GEN.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF888TDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2, 3 ENCFF363QMG 1060558 ENCODE Processing Pipeline 2b1f49a0c51fa0473f8f3f5f062be6fd https://www.encodeproject.org/files/ENCFF888TDQ/@@download/ENCFF888TDQ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF101WQA fastq reads ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF778REX 2036669850 Michael Snyder, Stanford af352eb8869ff76b1aaeb40d60999cae SRA:SRR6213914 https://www.encodeproject.org/files/ENCFF101WQA/@@download/ENCFF101WQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF693AUP fastq reads ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF644SON 2078373053 Michael Snyder, Stanford 43cca420a0db0e41cff7a832235fb0c6 SRA:SRR6213913 https://www.encodeproject.org/files/ENCFF693AUP/@@download/ENCFF693AUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF644SON fastq reads ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF693AUP 2097060392 Michael Snyder, Stanford 65aab9d199d868e77e7ce2b725e94b76 SRA:SRR6213913 https://www.encodeproject.org/files/ENCFF644SON/@@download/ENCFF644SON.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF778REX fastq reads ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF101WQA 2014969275 Michael Snyder, Stanford 2d5842c3dd5b618a9f5dc184e08360c2 SRA:SRR6213914 https://www.encodeproject.org/files/ENCFF778REX/@@download/ENCFF778REX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF362CDP bam unfiltered alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF644SON, ENCFF693AUP, ENCFF807MUK 4285033420 ENCODE Processing Pipeline 1fecf4d2dc5757b1ea2df3537aeaccb9 https://www.encodeproject.org/files/ENCFF362CDP/@@download/ENCFF362CDP.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF465JHR bam unfiltered alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF101WQA, ENCFF643CGH, ENCFF778REX 4168382735 ENCODE Processing Pipeline dab27fb8b754db7a74ff8ea4d7f5f5f8 https://www.encodeproject.org/files/ENCFF465JHR/@@download/ENCFF465JHR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF463BDR bam unfiltered alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF101WQA, ENCFF778REX, ENCFF807MUK 4161569748 ENCODE Processing Pipeline 2ff263ce89bc3bf76fde2443dbffa397 https://www.encodeproject.org/files/ENCFF463BDR/@@download/ENCFF463BDR.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF122SAG bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF101WQA, ENCFF643CGH, ENCFF778REX 3568835673 ENCODE Processing Pipeline 284f116283b4e02bc7f29c4466983993 https://www.encodeproject.org/files/ENCFF122SAG/@@download/ENCFF122SAG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF132OEN bam unfiltered alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF644SON, ENCFF693AUP 4292026029 ENCODE Processing Pipeline 71c7744474308a573ed956603da16175 https://www.encodeproject.org/files/ENCFF132OEN/@@download/ENCFF132OEN.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF884VSM bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF644SON, ENCFF693AUP, ENCFF807MUK 3661651480 ENCODE Processing Pipeline a7b3ab5328155a5cb62b237a9ffba332 https://www.encodeproject.org/files/ENCFF884VSM/@@download/ENCFF884VSM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF789HSB bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF101WQA, ENCFF778REX, ENCFF807MUK 3565954778 ENCODE Processing Pipeline 5bb4cdd6a1510c7a8fb2fedd4217e5b4 https://www.encodeproject.org/files/ENCFF789HSB/@@download/ENCFF789HSB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF478PNG bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF644SON, ENCFF693AUP 3664554817 ENCODE Processing Pipeline c6d7d654b903d441eb4eb7537af3b17d https://www.encodeproject.org/files/ENCFF478PNG/@@download/ENCFF478PNG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF910RVW bigWig signal p-value ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF884VSM 1106950177 ENCODE Processing Pipeline f74fcc527ecb5f6c9d8114091a15803b https://www.encodeproject.org/files/ENCFF910RVW/@@download/ENCFF910RVW.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF746WTG bigWig signal p-value ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF789HSB 1205692077 ENCODE Processing Pipeline a8319d4120b93bf31827e5cce35c8f40 https://www.encodeproject.org/files/ENCFF746WTG/@@download/ENCFF746WTG.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF861VYV bigWig signal p-value ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF789HSB, ENCFF884VSM 1623207816 ENCODE Processing Pipeline 4ab0d34cf2965aa753bbf9114139b59b https://www.encodeproject.org/files/ENCFF861VYV/@@download/ENCFF861VYV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF085DRU bigWig fold change over control ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF884VSM 1267983983 ENCODE Processing Pipeline af39b76a5d15c022e797a6ef52e245d8 https://www.encodeproject.org/files/ENCFF085DRU/@@download/ENCFF085DRU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF900JOP bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF789HSB 6119461 ENCODE Processing Pipeline 44e92bb8ef4eb9328e1065714a0becfe https://www.encodeproject.org/files/ENCFF900JOP/@@download/ENCFF900JOP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF024NLW bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF789HSB, ENCFF884VSM 6764702 ENCODE Processing Pipeline 653a9e2d357a8db1629fe6a5d2be846f https://www.encodeproject.org/files/ENCFF024NLW/@@download/ENCFF024NLW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF098XPE bigWig fold change over control ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF789HSB 1231278774 ENCODE Processing Pipeline 118e979cfad2ae604b17f98a6a25bb3b https://www.encodeproject.org/files/ENCFF098XPE/@@download/ENCFF098XPE.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF862QTZ bigWig fold change over control ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF789HSB, ENCFF884VSM 1796204751 ENCODE Processing Pipeline a3d7faae8473515be9ec95fabc4861d5 https://www.encodeproject.org/files/ENCFF862QTZ/@@download/ENCFF862QTZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF157HQJ bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF884VSM 6056902 ENCODE Processing Pipeline a433709568512c571da53155355b9cc6 https://www.encodeproject.org/files/ENCFF157HQJ/@@download/ENCFF157HQJ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF670JMA bed narrowPeak conservative idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF024NLW, ENCFF157HQJ, ENCFF900JOP 27523 ENCODE Processing Pipeline 3b8080ebd384adb53d7faae6777ea2c8 https://www.encodeproject.org/files/ENCFF670JMA/@@download/ENCFF670JMA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF793CPR bigBed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF157HQJ 11297040 ENCODE Processing Pipeline b450b601843788815ca5d105ad159d0f https://www.encodeproject.org/files/ENCFF793CPR/@@download/ENCFF793CPR.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF633NGQ bigBed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF900JOP 11309326 ENCODE Processing Pipeline b1650d2b54b8da6ef12ccd6deea206dc https://www.encodeproject.org/files/ENCFF633NGQ/@@download/ENCFF633NGQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF165QVB bigBed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF024NLW 10919575 ENCODE Processing Pipeline 2d6cf36c6ff5183ff9af4b02cad4401a https://www.encodeproject.org/files/ENCFF165QVB/@@download/ENCFF165QVB.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF364PQT bigBed narrowPeak conservative idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF670JMA 101453 ENCODE Processing Pipeline 166765845291d74e483d5f3d3100f48f https://www.encodeproject.org/files/ENCFF364PQT/@@download/ENCFF364PQT.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF706XII bed narrowPeak optimal idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF024NLW, ENCFF157HQJ, ENCFF900JOP 41398 ENCODE Processing Pipeline 8251abd1b0d892029062f364c9d93e38 https://www.encodeproject.org/files/ENCFF706XII/@@download/ENCFF706XII.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF066JEU bigBed narrowPeak optimal idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF706XII 123257 ENCODE Processing Pipeline 0d5b702e58dafb717acca167f527bff9 https://www.encodeproject.org/files/ENCFF066JEU/@@download/ENCFF066JEU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF341LGP bigWig signal p-value ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478PNG 1202953516 ENCODE Processing Pipeline 7a3c33f5429123c48e38fa08f812ed5d https://www.encodeproject.org/files/ENCFF341LGP/@@download/ENCFF341LGP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF148QHJ bigWig signal p-value ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF122SAG 1164742402 ENCODE Processing Pipeline 60f0a9bfbaf4a8e0c32f9dab25319032 https://www.encodeproject.org/files/ENCFF148QHJ/@@download/ENCFF148QHJ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF244KRU bigWig signal p-value ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF122SAG, ENCFF478PNG 1642420468 ENCODE Processing Pipeline 9f7f09d7fd089d54d24a06329885955d https://www.encodeproject.org/files/ENCFF244KRU/@@download/ENCFF244KRU.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF629UXC bigWig fold change over control ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478PNG 1220811050 ENCODE Processing Pipeline 400937442158fc61fce94dc5aa2b080a https://www.encodeproject.org/files/ENCFF629UXC/@@download/ENCFF629UXC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF873RJM bigWig fold change over control ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF122SAG 1231338462 ENCODE Processing Pipeline beb4e31b63163dce1d68bddf2065d440 https://www.encodeproject.org/files/ENCFF873RJM/@@download/ENCFF873RJM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF521GGF bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF122SAG, ENCFF478PNG 6771628 ENCODE Processing Pipeline d90c8b000c51ea2fc043cea4c8787bff https://www.encodeproject.org/files/ENCFF521GGF/@@download/ENCFF521GGF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF434XGU bigBed narrowPeak conservative idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF857GBU 106846 ENCODE Processing Pipeline f6c5b7652c1ceecda2c415e076870238 https://www.encodeproject.org/files/ENCFF434XGU/@@download/ENCFF434XGU.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF123MKH bigWig fold change over control ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF122SAG, ENCFF478PNG 1801544685 ENCODE Processing Pipeline 85d478c2d09b483810e3844f7aadad2a https://www.encodeproject.org/files/ENCFF123MKH/@@download/ENCFF123MKH.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF712QYF bigBed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF541UHD 11324953 ENCODE Processing Pipeline 751e6eca4ef94593b4415b663739b504 https://www.encodeproject.org/files/ENCFF712QYF/@@download/ENCFF712QYF.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF857GBU bed narrowPeak conservative idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF521GGF, ENCFF541UHD, ENCFF928FZD 30737 ENCODE Processing Pipeline 0d1d00eaaae4da44fbf187c339a629a3 https://www.encodeproject.org/files/ENCFF857GBU/@@download/ENCFF857GBU.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF416RTN bigBed narrowPeak optimal idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF729VVD 128513 ENCODE Processing Pipeline 9a1946afd379677981c97fe830f53723 https://www.encodeproject.org/files/ENCFF416RTN/@@download/ENCFF416RTN.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF828ZBO bigBed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF928FZD 11312413 ENCODE Processing Pipeline e4537b811f2739406c648259ac7e2220 https://www.encodeproject.org/files/ENCFF828ZBO/@@download/ENCFF828ZBO.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF928FZD bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478PNG 6059299 ENCODE Processing Pipeline efb97b943d677f6c602a64d33c5d5ddb https://www.encodeproject.org/files/ENCFF928FZD/@@download/ENCFF928FZD.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF541UHD bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF122SAG 6122421 ENCODE Processing Pipeline 4c30ebffe2a02719e7274215074475dc https://www.encodeproject.org/files/ENCFF541UHD/@@download/ENCFF541UHD.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF106NBF bigBed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF521GGF 10939200 ENCODE Processing Pipeline 7889f47e6b089365ee5c89235b8402d3 https://www.encodeproject.org/files/ENCFF106NBF/@@download/ENCFF106NBF.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF729VVD bed narrowPeak optimal idr thresholded peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF521GGF, ENCFF541UHD, ENCFF928FZD 44405 ENCODE Processing Pipeline 30c265ec97ffa7885f934a04ed2757dc https://www.encodeproject.org/files/ENCFF729VVD/@@download/ENCFF729VVD.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF462CQQ fastq reads ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 1 40 single-ended 663086790 Xiang-Dong Fu, UCSD ccd52a766462f171649a0e13d7659c9a https://www.encodeproject.org/files/ENCFF462CQQ/@@download/ENCFF462CQQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF017VZP/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF400OAC fastq reads ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 1 40 single-ended 815661800 Xiang-Dong Fu, UCSD c4125b5b69b2d785fb76860e1108a6b9 https://www.encodeproject.org/files/ENCFF400OAC/@@download/ENCFF400OAC.fastq.gz Illumina HiSeq 2000 /files/ENCFF298FEZ/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF389PUP bam unfiltered alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 40 ENCFF462CQQ, ENCFF807MUK 850756125 ENCODE Processing Pipeline f172127262f60324afd5c84c1ef956a8 https://www.encodeproject.org/files/ENCFF389PUP/@@download/ENCFF389PUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF614ZUA bam unfiltered alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 40 ENCFF400OAC, ENCFF807MUK 1050642919 ENCODE Processing Pipeline afe6a557f25a3d859f8cb2a1f5ea5b87 https://www.encodeproject.org/files/ENCFF614ZUA/@@download/ENCFF614ZUA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF880EQU bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 40 ENCFF462CQQ, ENCFF807MUK 457664659 ENCODE Processing Pipeline 811115829e7951f9c8769b5f7906b9e7 https://www.encodeproject.org/files/ENCFF880EQU/@@download/ENCFF880EQU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF221UBB bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 40 ENCFF400OAC, ENCFF807MUK 587757813 ENCODE Processing Pipeline a7184fbe6e54e4356308244610d4b6a1 https://www.encodeproject.org/files/ENCFF221UBB/@@download/ENCFF221UBB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF801QND bigWig signal p-value ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF405FNP, ENCFF880EQU 528671844 ENCODE Processing Pipeline ff51688a7ce0ef63aa956327e7debde1 https://www.encodeproject.org/files/ENCFF801QND/@@download/ENCFF801QND.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF866KKE bigWig signal p-value ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF221UBB, ENCFF732BTE 630400179 ENCODE Processing Pipeline 554ee1f1515818620ad23245a5556159 https://www.encodeproject.org/files/ENCFF866KKE/@@download/ENCFF866KKE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF780SIR bigWig signal p-value ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF221UBB, ENCFF405FNP, ENCFF732BTE, ENCFF880EQU 1070425644 ENCODE Processing Pipeline 5ac0b034c4d665617c1290e3bd854bf0 https://www.encodeproject.org/files/ENCFF780SIR/@@download/ENCFF780SIR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF709QTL bigWig fold change over control ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF405FNP, ENCFF880EQU 319188908 ENCODE Processing Pipeline 783c82b89f458a6ad1d0d06bc037cb87 https://www.encodeproject.org/files/ENCFF709QTL/@@download/ENCFF709QTL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF832GIC bigWig fold change over control ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF221UBB, ENCFF405FNP, ENCFF732BTE, ENCFF880EQU 848876582 ENCODE Processing Pipeline 5c4a1a1b4723ab4417807cd17b2a6ec3 https://www.encodeproject.org/files/ENCFF832GIC/@@download/ENCFF832GIC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF481DUX bigWig fold change over control ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF221UBB, ENCFF732BTE 381863654 ENCODE Processing Pipeline c921ba770cbfefdfbaf20d614224a40c https://www.encodeproject.org/files/ENCFF481DUX/@@download/ENCFF481DUX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF612VOP bam unfiltered alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF400OAC, ENCFF643CGH 1054676737 ENCODE Processing Pipeline 497b169837d5f694c5c178f255b6bd2a https://www.encodeproject.org/files/ENCFF612VOP/@@download/ENCFF612VOP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF306YVT bam unfiltered alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF462CQQ, ENCFF643CGH 854219988 ENCODE Processing Pipeline b20c47228eba28a42b3f45542c2175df https://www.encodeproject.org/files/ENCFF306YVT/@@download/ENCFF306YVT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF526UMU bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 40 ENCFF462CQQ, ENCFF643CGH 457080387 ENCODE Processing Pipeline 9863d53d8cae302c09c1fbfb6f9afbf9 https://www.encodeproject.org/files/ENCFF526UMU/@@download/ENCFF526UMU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF117CNE bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 40 ENCFF400OAC, ENCFF643CGH 587066461 ENCODE Processing Pipeline a5bf0f2efade8cb7c424787911088765 https://www.encodeproject.org/files/ENCFF117CNE/@@download/ENCFF117CNE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF046RLR bigWig signal p-value ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF117CNE, ENCFF695XBC 577412095 ENCODE Processing Pipeline 55484de8570b9874ee03abfc4b6e800e https://www.encodeproject.org/files/ENCFF046RLR/@@download/ENCFF046RLR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF515NMY bigWig signal p-value ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF526UMU, ENCFF773DJG 532492043 ENCODE Processing Pipeline 5cf2f7cd57261a4456e99ac7a13766d3 https://www.encodeproject.org/files/ENCFF515NMY/@@download/ENCFF515NMY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF231ZGI bigWig signal p-value ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF117CNE, ENCFF526UMU, ENCFF695XBC, ENCFF773DJG 959312914 ENCODE Processing Pipeline 15abacb0e2c1eb790630ccaf2b5d0642 https://www.encodeproject.org/files/ENCFF231ZGI/@@download/ENCFF231ZGI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF462EDE bigWig fold change over control ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF526UMU, ENCFF773DJG 318927676 ENCODE Processing Pipeline 8ca735224d730b2c0fdb259c2c5a5ada https://www.encodeproject.org/files/ENCFF462EDE/@@download/ENCFF462EDE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF506GOK bigWig fold change over control ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF117CNE, ENCFF695XBC 376994842 ENCODE Processing Pipeline a69b80ec974df2f51ed97e7b4d49b9fe https://www.encodeproject.org/files/ENCFF506GOK/@@download/ENCFF506GOK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF670MXH bigWig fold change over control ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF117CNE, ENCFF526UMU, ENCFF695XBC, ENCFF773DJG 849217118 ENCODE Processing Pipeline 8e4962e10383a45ea80c83b859ffd200 https://www.encodeproject.org/files/ENCFF670MXH/@@download/ENCFF670MXH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF153MGN bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF526UMU, ENCFF773DJG 3646309 ENCODE Processing Pipeline 05e2e025e167dde32529b9fa418b498d https://www.encodeproject.org/files/ENCFF153MGN/@@download/ENCFF153MGN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF078XQP bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF117CNE, ENCFF695XBC 4090210 ENCODE Processing Pipeline c5af118ff88ae2cbff05d83d7a8a6e27 https://www.encodeproject.org/files/ENCFF078XQP/@@download/ENCFF078XQP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF501MGY bigBed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF078XQP 10478910 ENCODE Processing Pipeline 578cc9b3e87829262f127b6340d4b72e https://www.encodeproject.org/files/ENCFF501MGY/@@download/ENCFF501MGY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF424XDV bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF117CNE, ENCFF526UMU, ENCFF695XBC, ENCFF773DJG 5771078 ENCODE Processing Pipeline fd7247b7e24289b5112e9558e498ec4a https://www.encodeproject.org/files/ENCFF424XDV/@@download/ENCFF424XDV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF265JLS bigBed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF153MGN 9113824 ENCODE Processing Pipeline 59c3a4e0f068cbea4c3e7e79493b0bcf https://www.encodeproject.org/files/ENCFF265JLS/@@download/ENCFF265JLS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF271LYE bigBed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF424XDV 11420523 ENCODE Processing Pipeline aaa1e9ea7466c3491429898cdf16965d https://www.encodeproject.org/files/ENCFF271LYE/@@download/ENCFF271LYE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF905CUQ bed narrowPeak conservative idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF078XQP, ENCFF153MGN, ENCFF419RSJ, ENCFF424XDV 606 ENCODE Processing Pipeline 4275f1573ffcfefc48a5f8ed9465bea3 https://www.encodeproject.org/files/ENCFF905CUQ/@@download/ENCFF905CUQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF534RKY bigBed narrowPeak conservative idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF905CUQ 60391 ENCODE Processing Pipeline 41233dd102daec2679cf9a522491818b https://www.encodeproject.org/files/ENCFF534RKY/@@download/ENCFF534RKY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF157IIV bed narrowPeak optimal idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF078XQP, ENCFF153MGN, ENCFF419RSJ, ENCFF424XDV 969 ENCODE Processing Pipeline e259296ed9a043f2584af1fa7229b97a https://www.encodeproject.org/files/ENCFF157IIV/@@download/ENCFF157IIV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF803TLV bigBed narrowPeak optimal idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF157IIV 74626 ENCODE Processing Pipeline 3e0016cf0a3d3ea5d102e931a967d7c2 https://www.encodeproject.org/files/ENCFF803TLV/@@download/ENCFF803TLV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF179KYF bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF221UBB, ENCFF405FNP, ENCFF732BTE, ENCFF880EQU 5938448 ENCODE Processing Pipeline d2b8c585075c03734e11c5b3aba8a2b0 https://www.encodeproject.org/files/ENCFF179KYF/@@download/ENCFF179KYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF107OHH bigBed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF890HLT 9480179 ENCODE Processing Pipeline fa8ea7bb34123bbcd51ecbac7f88d928 https://www.encodeproject.org/files/ENCFF107OHH/@@download/ENCFF107OHH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF890HLT bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF405FNP, ENCFF880EQU 3875984 ENCODE Processing Pipeline a452a0d65fa6a5c52d218ad64ffa6455 https://www.encodeproject.org/files/ENCFF890HLT/@@download/ENCFF890HLT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF599KFI bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF221UBB, ENCFF732BTE 4089549 ENCODE Processing Pipeline 9fed76cfaf60548fc59c7b33016b8b37 https://www.encodeproject.org/files/ENCFF599KFI/@@download/ENCFF599KFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF106EAD bigBed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF179KYF 11405718 ENCODE Processing Pipeline 9d75cea7e2cd554ecabd7fc94e30ef56 https://www.encodeproject.org/files/ENCFF106EAD/@@download/ENCFF106EAD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF434IHY bigBed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF599KFI 10470951 ENCODE Processing Pipeline 1cc0904e9151c06883751d5384ad8e60 https://www.encodeproject.org/files/ENCFF434IHY/@@download/ENCFF434IHY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF481ZYS bigBed narrowPeak conservative idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF155OFK 74808 ENCODE Processing Pipeline 34b513db4e7ec479994c0db080a1a111 https://www.encodeproject.org/files/ENCFF481ZYS/@@download/ENCFF481ZYS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF155OFK bed narrowPeak conservative idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF001TDO, ENCFF179KYF, ENCFF599KFI, ENCFF890HLT 1011 ENCODE Processing Pipeline 4af427b3e237570b261da283e961ffea https://www.encodeproject.org/files/ENCFF155OFK/@@download/ENCFF155OFK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF380TJT bed narrowPeak optimal idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF001TDO, ENCFF179KYF, ENCFF599KFI, ENCFF890HLT 1111 ENCODE Processing Pipeline a2b696f4cb520051989d7aee75b9d2a6 https://www.encodeproject.org/files/ENCFF380TJT/@@download/ENCFF380TJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF327CNA bigBed narrowPeak optimal idr thresholded peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1, 2 ENCFF380TJT 75035 ENCODE Processing Pipeline 8e2a06309cf6fd60f7da938198233574 https://www.encodeproject.org/files/ENCFF327CNA/@@download/ENCFF327CNA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF413POC fastq reads ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF943NZH 1564344189 Michael Snyder, Stanford 016e719bb59355b45659ea3296adecc1 SRA:SRR5111040 https://www.encodeproject.org/files/ENCFF413POC/@@download/ENCFF413POC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF589GMJ fastq reads ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF211WHO 2920811316 Michael Snyder, Stanford f63ffb555c77d652dbf92acb9d6f34aa SRA:SRR5111039 https://www.encodeproject.org/files/ENCFF589GMJ/@@download/ENCFF589GMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF943NZH fastq reads ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF413POC 1557163710 Michael Snyder, Stanford 5be6147188250bfd3057452f7681217e SRA:SRR5111040 https://www.encodeproject.org/files/ENCFF943NZH/@@download/ENCFF943NZH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF211WHO fastq reads ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF589GMJ 2912307724 Michael Snyder, Stanford b88fa4156e99414c145a94d013bfcc99 SRA:SRR5111039 https://www.encodeproject.org/files/ENCFF211WHO/@@download/ENCFF211WHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF733VLJ bam unfiltered alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF413POC, ENCFF807MUK, ENCFF943NZH 3548046883 ENCODE Processing Pipeline e733d38c05d3fe30091b1c85388ee246 https://www.encodeproject.org/files/ENCFF733VLJ/@@download/ENCFF733VLJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF924KRD bam unfiltered alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF413POC, ENCFF643CGH, ENCFF943NZH 3552910276 ENCODE Processing Pipeline 8b5e15fb84f1dc66026481cc412e1de3 https://www.encodeproject.org/files/ENCFF924KRD/@@download/ENCFF924KRD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF491TCV bam unfiltered alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF211WHO, ENCFF589GMJ, ENCFF807MUK 6383652488 ENCODE Processing Pipeline fa7d211460f4bc5d6069d88151af1a79 https://www.encodeproject.org/files/ENCFF491TCV/@@download/ENCFF491TCV.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF451LEO bam unfiltered alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF211WHO, ENCFF589GMJ, ENCFF643CGH 6391261160 ENCODE Processing Pipeline 162a4e9fe5499c1fe4ea29d590e342a1 https://www.encodeproject.org/files/ENCFF451LEO/@@download/ENCFF451LEO.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF303OPV bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF413POC, ENCFF643CGH, ENCFF943NZH 3147307808 ENCODE Processing Pipeline 1b2da2ab4fa781ab2fa9a3f8aa7de966 https://www.encodeproject.org/files/ENCFF303OPV/@@download/ENCFF303OPV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF424DRA bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF413POC, ENCFF807MUK, ENCFF943NZH 3144941761 ENCODE Processing Pipeline 2cf554e1e60c403cf05e1f281dacb21c https://www.encodeproject.org/files/ENCFF424DRA/@@download/ENCFF424DRA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF063SNY bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF211WHO, ENCFF589GMJ, ENCFF807MUK 5491282953 ENCODE Processing Pipeline 1da73ae829ec17cd9fa65d40e3827686 https://www.encodeproject.org/files/ENCFF063SNY/@@download/ENCFF063SNY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF580LFA bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF211WHO, ENCFF589GMJ, ENCFF643CGH 5493504422 ENCODE Processing Pipeline f09581758bc966408f0312328f7e65a3 https://www.encodeproject.org/files/ENCFF580LFA/@@download/ENCFF580LFA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF418UZR bigWig signal p-value ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF424DRA 1290233808 ENCODE Processing Pipeline 2f8ece58793fd8e110c3d3a37f3dbafa https://www.encodeproject.org/files/ENCFF418UZR/@@download/ENCFF418UZR.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF038ODH bigWig signal p-value ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF063SNY 1506645331 ENCODE Processing Pipeline 159fcd2a93a14a76c07ce7aeb0f15495 https://www.encodeproject.org/files/ENCFF038ODH/@@download/ENCFF038ODH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF031QZX bigWig signal p-value ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF063SNY, ENCFF424DRA 1641006758 ENCODE Processing Pipeline 21e393d97101593772f4b781a46ab266 https://www.encodeproject.org/files/ENCFF031QZX/@@download/ENCFF031QZX.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF556ILV bigWig fold change over control ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF063SNY 1509159739 ENCODE Processing Pipeline 1d74f5913afc60f999977f62dacaf757 https://www.encodeproject.org/files/ENCFF556ILV/@@download/ENCFF556ILV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF281HMU bigWig fold change over control ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF424DRA 1182678023 ENCODE Processing Pipeline 2c58911188d4b24a4823d972cd5fa21f https://www.encodeproject.org/files/ENCFF281HMU/@@download/ENCFF281HMU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF298MWZ bigWig fold change over control ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF063SNY, ENCFF424DRA 1924588544 ENCODE Processing Pipeline ed3ee1004a3af68b245feb945fff9756 https://www.encodeproject.org/files/ENCFF298MWZ/@@download/ENCFF298MWZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF344BWA bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF063SNY 7048808 ENCODE Processing Pipeline d62bfa375b1d466e3780ccf26af0a69e https://www.encodeproject.org/files/ENCFF344BWA/@@download/ENCFF344BWA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF621XNB bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF424DRA 6680124 ENCODE Processing Pipeline af8230bb817e3ab8a4573e8c29cd5531 https://www.encodeproject.org/files/ENCFF621XNB/@@download/ENCFF621XNB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF269OXE bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF063SNY, ENCFF424DRA 7163477 ENCODE Processing Pipeline 3e8e5d01d9b356cf679b49b8f7e1f3e8 https://www.encodeproject.org/files/ENCFF269OXE/@@download/ENCFF269OXE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF015ZGN bigBed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF344BWA 13312089 ENCODE Processing Pipeline 18acac69087605cf7e176975caf0cb8d https://www.encodeproject.org/files/ENCFF015ZGN/@@download/ENCFF015ZGN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF893FFM bigBed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF621XNB 13460787 ENCODE Processing Pipeline 62a6dd2e341bb0e47ef180b9f5548170 https://www.encodeproject.org/files/ENCFF893FFM/@@download/ENCFF893FFM.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF795UHE bigBed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF269OXE 13151573 ENCODE Processing Pipeline 0bd022e0be808475d4d17c96d0a543a2 https://www.encodeproject.org/files/ENCFF795UHE/@@download/ENCFF795UHE.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF990DDG bed narrowPeak conservative idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF269OXE, ENCFF344BWA, ENCFF621XNB 389606 ENCODE Processing Pipeline f4c5f3791970e4b204fe2771b9b9cde9 https://www.encodeproject.org/files/ENCFF990DDG/@@download/ENCFF990DDG.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF904HOD bed narrowPeak optimal idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF269OXE, ENCFF344BWA, ENCFF621XNB 446663 ENCODE Processing Pipeline 33190e94f5e15116004409a0363b4ac7 https://www.encodeproject.org/files/ENCFF904HOD/@@download/ENCFF904HOD.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF700ZPJ bigBed narrowPeak conservative idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF990DDG 827882 ENCODE Processing Pipeline 3640dc5ff273ddfa8e0905d132aac62a https://www.encodeproject.org/files/ENCFF700ZPJ/@@download/ENCFF700ZPJ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF186AKI bigBed narrowPeak optimal idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF904HOD 920034 ENCODE Processing Pipeline 3fa542f761182b887033731b2e70b8b3 https://www.encodeproject.org/files/ENCFF186AKI/@@download/ENCFF186AKI.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF070HMC bigWig signal p-value ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF580LFA 1320713086 ENCODE Processing Pipeline 4f529005040a12db65a4e49050dd786e https://www.encodeproject.org/files/ENCFF070HMC/@@download/ENCFF070HMC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF674TQS bigWig signal p-value ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303OPV 1268145656 ENCODE Processing Pipeline 7cbff47067750ac1a0121393b3276f71 https://www.encodeproject.org/files/ENCFF674TQS/@@download/ENCFF674TQS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF374EYF bigWig signal p-value ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF303OPV, ENCFF580LFA 1569986956 ENCODE Processing Pipeline 4d16963c20fedf2d5f748ad3925b54e9 https://www.encodeproject.org/files/ENCFF374EYF/@@download/ENCFF374EYF.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF448QQS bigWig fold change over control ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF580LFA 1485951112 ENCODE Processing Pipeline 6bbc9834cfd1ae2fbf486c033bc3225e https://www.encodeproject.org/files/ENCFF448QQS/@@download/ENCFF448QQS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF901RTC bigWig fold change over control ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303OPV 1193813703 ENCODE Processing Pipeline 0b129b0d7cd567fb29a49d777fbf9c19 https://www.encodeproject.org/files/ENCFF901RTC/@@download/ENCFF901RTC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF158CYH bigWig fold change over control ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF303OPV, ENCFF580LFA 1936663361 ENCODE Processing Pipeline 0f5d88301b41e47e4dbc48456861adc2 https://www.encodeproject.org/files/ENCFF158CYH/@@download/ENCFF158CYH.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF469CIF bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF580LFA 6980304 ENCODE Processing Pipeline de3a3443e0332c028b6c7979c3574180 https://www.encodeproject.org/files/ENCFF469CIF/@@download/ENCFF469CIF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF260KHN bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303OPV 6510116 ENCODE Processing Pipeline 2abfb6040a19e0b459d8f072f56b0c1c https://www.encodeproject.org/files/ENCFF260KHN/@@download/ENCFF260KHN.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF401SAI bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF303OPV, ENCFF580LFA 7146756 ENCODE Processing Pipeline 9601716e95e876085b0c9db5a0f95a73 https://www.encodeproject.org/files/ENCFF401SAI/@@download/ENCFF401SAI.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF539PCH bigBed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF469CIF 13325325 ENCODE Processing Pipeline 0647c2d00cde06db70825979abc8d6c2 https://www.encodeproject.org/files/ENCFF539PCH/@@download/ENCFF539PCH.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF204LKE bigBed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF260KHN 13426440 ENCODE Processing Pipeline 12401192fde848fbd951899d8d92442c https://www.encodeproject.org/files/ENCFF204LKE/@@download/ENCFF204LKE.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF782TTZ bigBed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF401SAI 13171671 ENCODE Processing Pipeline d54ae7b4d030e528cfe105b02d0b02e1 https://www.encodeproject.org/files/ENCFF782TTZ/@@download/ENCFF782TTZ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF035UBW bed narrowPeak conservative idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF260KHN, ENCFF401SAI, ENCFF419RSJ, ENCFF469CIF 391248 ENCODE Processing Pipeline a28f20ec24539db41b44e5d47813cbe4 https://www.encodeproject.org/files/ENCFF035UBW/@@download/ENCFF035UBW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF357BMG bigBed narrowPeak conservative idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF035UBW 831850 ENCODE Processing Pipeline 544fa0a8e3345de2fb0bbf48506927b4 https://www.encodeproject.org/files/ENCFF357BMG/@@download/ENCFF357BMG.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF868TRF bed narrowPeak optimal idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF260KHN, ENCFF401SAI, ENCFF419RSJ, ENCFF469CIF 438824 ENCODE Processing Pipeline b15e4f506bc2356ff81ab51d50f0c4b4 https://www.encodeproject.org/files/ENCFF868TRF/@@download/ENCFF868TRF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF161OZG bigBed narrowPeak optimal idr thresholded peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF868TRF 908757 ENCODE Processing Pipeline 4238d99c47283b304f9088796a18b625 https://www.encodeproject.org/files/ENCFF161OZG/@@download/ENCFF161OZG.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF960VKG fastq reads ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 983249014 Xiang-Dong Fu, UCSD 9617dd69f519bd4b48585a282d563e38 https://www.encodeproject.org/files/ENCFF960VKG/@@download/ENCFF960VKG.fastq.gz Illumina HiSeq 2500 /files/ENCFF061XKR/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF645KVH fastq reads ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 1030357510 Xiang-Dong Fu, UCSD 7ad6ba79972b0edb7437d9dd9d0ca476 https://www.encodeproject.org/files/ENCFF645KVH/@@download/ENCFF645KVH.fastq.gz Illumina HiSeq 2500 /files/ENCFF605JOL/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF822AKW bam unfiltered alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF645KVH, ENCFF807MUK 1283188428 ENCODE Processing Pipeline fc3223edd90671ab0be898d704ef3fd8 https://www.encodeproject.org/files/ENCFF822AKW/@@download/ENCFF822AKW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF527XRI bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF645KVH, ENCFF807MUK 674807359 ENCODE Processing Pipeline 87ec28539e47a2fa33d6d13b07122da6 https://www.encodeproject.org/files/ENCFF527XRI/@@download/ENCFF527XRI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF447XXO bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF807MUK, ENCFF960VKG 653190197 ENCODE Processing Pipeline f81e92f31837545e882cc88e02369ffe https://www.encodeproject.org/files/ENCFF447XXO/@@download/ENCFF447XXO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF730XVO bam unfiltered alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF807MUK, ENCFF960VKG 1228453676 ENCODE Processing Pipeline 0828f441a04cd26f3f8bb9170afa32f8 https://www.encodeproject.org/files/ENCFF730XVO/@@download/ENCFF730XVO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF272PYD bam unfiltered alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF645KVH 1285679552 ENCODE Processing Pipeline 3c023bed9c2972af8fed5b40ecd2dde4 https://www.encodeproject.org/files/ENCFF272PYD/@@download/ENCFF272PYD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF809COT bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF645KVH 674002930 ENCODE Processing Pipeline 319c8e150536023775e68df9f19d18f6 https://www.encodeproject.org/files/ENCFF809COT/@@download/ENCFF809COT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF833PJW bam unfiltered alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF643CGH, ENCFF960VKG 1231096800 ENCODE Processing Pipeline 3ba22cf716f5ea66d58a916a9d976bbf https://www.encodeproject.org/files/ENCFF833PJW/@@download/ENCFF833PJW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF382RJA bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF643CGH, ENCFF960VKG 652446874 ENCODE Processing Pipeline 42ad8d34fc87a554ca177f02f080b144 https://www.encodeproject.org/files/ENCFF382RJA/@@download/ENCFF382RJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF256MDO bigWig signal p-value ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF447XXO 576243858 ENCODE Processing Pipeline 26e9f7daa38c0b18203ee9784d8e2761 https://www.encodeproject.org/files/ENCFF256MDO/@@download/ENCFF256MDO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF299DCU bigWig fold change over control ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF447XXO 393533049 ENCODE Processing Pipeline 5064ad8325b18665328a9feb71603b6b https://www.encodeproject.org/files/ENCFF299DCU/@@download/ENCFF299DCU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF211BRY bigWig signal p-value ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF527XRI 628533633 ENCODE Processing Pipeline e131c99969418901e97187fb7928cc1e https://www.encodeproject.org/files/ENCFF211BRY/@@download/ENCFF211BRY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF081CSM bigWig fold change over control ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF527XRI 414972816 ENCODE Processing Pipeline 6b1df7563f4b65d988179ac43e854d4f https://www.encodeproject.org/files/ENCFF081CSM/@@download/ENCFF081CSM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF506GGI bed narrowPeak conservative idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF043LEZ, ENCFF061XHO, ENCFF945SAK 41055 ENCODE Processing Pipeline f61f41d3df410b7428190d3856c1d046 https://www.encodeproject.org/files/ENCFF506GGI/@@download/ENCFF506GGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF356RKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF937MYV 146889 ENCODE Processing Pipeline 48c8f74f4c9c8a07ed551cd9a3e1de1f https://www.encodeproject.org/files/ENCFF356RKJ/@@download/ENCFF356RKJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF043LEZ bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF447XXO 5463413 ENCODE Processing Pipeline 430ce82183fe4f54630136fa36711237 https://www.encodeproject.org/files/ENCFF043LEZ/@@download/ENCFF043LEZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF952XXJ bigWig signal p-value ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF447XXO, ENCFF462KWM, ENCFF527XRI 1027835626 ENCODE Processing Pipeline 0db891265325c5deec60564bc0af1ac1 https://www.encodeproject.org/files/ENCFF952XXJ/@@download/ENCFF952XXJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF227GAF bigWig fold change over control ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF447XXO, ENCFF462KWM, ENCFF527XRI 925317448 ENCODE Processing Pipeline ef42ffcb8e21d50a49ccb59f492c33dc https://www.encodeproject.org/files/ENCFF227GAF/@@download/ENCFF227GAF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF061XHO bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF447XXO, ENCFF462KWM, ENCFF527XRI 6927800 ENCODE Processing Pipeline e0905fad032fb443eeb9b585818d6976 https://www.encodeproject.org/files/ENCFF061XHO/@@download/ENCFF061XHO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF456EQB bigBed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF061XHO 13209270 ENCODE Processing Pipeline 018f176862607490040bf65ae268e75e https://www.encodeproject.org/files/ENCFF456EQB/@@download/ENCFF456EQB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF489VRY bigBed narrowPeak conservative idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF506GGI 137554 ENCODE Processing Pipeline 5e0d52e7e0185487123f54098887d475 https://www.encodeproject.org/files/ENCFF489VRY/@@download/ENCFF489VRY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF937MYV bed narrowPeak optimal idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF043LEZ, ENCFF061XHO, ENCFF945SAK 46710 ENCODE Processing Pipeline 31ef26daf87a9f9a5171bc8f6f303164 https://www.encodeproject.org/files/ENCFF937MYV/@@download/ENCFF937MYV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF682XFG bigBed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF945SAK 13202987 ENCODE Processing Pipeline 6690dc87ead607d4e4037e79abb283f5 https://www.encodeproject.org/files/ENCFF682XFG/@@download/ENCFF682XFG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF723EME bigWig signal p-value ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF382RJA, ENCFF719EDQ, ENCFF809COT, ENCFF874GUL 1076801743 ENCODE Processing Pipeline 924a0e4ef4bac1073ed65ac335c96c01 https://www.encodeproject.org/files/ENCFF723EME/@@download/ENCFF723EME.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF945SAK bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF527XRI 5679926 ENCODE Processing Pipeline 8d9742c262226324197683eea5de3134 https://www.encodeproject.org/files/ENCFF945SAK/@@download/ENCFF945SAK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF800PWU bigBed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF043LEZ 13200088 ENCODE Processing Pipeline f9c7e9d79d1a843a6a4ad124154d2654 https://www.encodeproject.org/files/ENCFF800PWU/@@download/ENCFF800PWU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF569TOO bigWig signal p-value ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF382RJA, ENCFF874GUL 500840196 ENCODE Processing Pipeline 1468283d325fa95a9f5094a1e10ff1f4 https://www.encodeproject.org/files/ENCFF569TOO/@@download/ENCFF569TOO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF743UVQ bigWig signal p-value ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF719EDQ, ENCFF809COT 503077042 ENCODE Processing Pipeline 00970827efac9c65be8e13c80df6cdbb https://www.encodeproject.org/files/ENCFF743UVQ/@@download/ENCFF743UVQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF793QFH bigWig fold change over control ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF382RJA, ENCFF719EDQ, ENCFF809COT, ENCFF874GUL 887100707 ENCODE Processing Pipeline 0b8ac13aa377cd13fae36b9f3c20678f https://www.encodeproject.org/files/ENCFF793QFH/@@download/ENCFF793QFH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF729DJN bigWig fold change over control ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF719EDQ, ENCFF809COT 434552870 ENCODE Processing Pipeline 1238d3d7b5cbf0072f638d52e66b3e26 https://www.encodeproject.org/files/ENCFF729DJN/@@download/ENCFF729DJN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF453RHM bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF382RJA, ENCFF874GUL 5450398 ENCODE Processing Pipeline 712578ae4d63347241e3acdbc5e327d0 https://www.encodeproject.org/files/ENCFF453RHM/@@download/ENCFF453RHM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF013USO bigWig fold change over control ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF382RJA, ENCFF874GUL 420686154 ENCODE Processing Pipeline b595bd35fff7f580d30ec33f50473957 https://www.encodeproject.org/files/ENCFF013USO/@@download/ENCFF013USO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF271NRW bigBed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF339QMW 13204535 ENCODE Processing Pipeline 47c3d1e65b9564a63f32cc83394a45a2 https://www.encodeproject.org/files/ENCFF271NRW/@@download/ENCFF271NRW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF047DPZ bigBed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF453RHM 13198902 ENCODE Processing Pipeline a95b63de247cbf89a8a74ad701392949 https://www.encodeproject.org/files/ENCFF047DPZ/@@download/ENCFF047DPZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF925LAI bigBed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF206AYJ 13208932 ENCODE Processing Pipeline a38f5b70628c128c5fdc5477715e787c https://www.encodeproject.org/files/ENCFF925LAI/@@download/ENCFF925LAI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF719JYX bed narrowPeak conservative idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF206AYJ, ENCFF339QMW, ENCFF419RSJ, ENCFF453RHM 41437 ENCODE Processing Pipeline 201e1b781fa4d4e499f50d60a54a0348 https://www.encodeproject.org/files/ENCFF719JYX/@@download/ENCFF719JYX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF339QMW bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF719EDQ, ENCFF809COT 5707715 ENCODE Processing Pipeline 10c8749b1450a9998c7bb0756b771728 https://www.encodeproject.org/files/ENCFF339QMW/@@download/ENCFF339QMW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF206AYJ bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF382RJA, ENCFF719EDQ, ENCFF809COT, ENCFF874GUL 6922998 ENCODE Processing Pipeline 0d609585bd5bc53763a57f7444ff01e2 https://www.encodeproject.org/files/ENCFF206AYJ/@@download/ENCFF206AYJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF003XSX bigBed narrowPeak conservative idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF719JYX 138349 ENCODE Processing Pipeline 2ff215f895edcf338186a5f368130a7e https://www.encodeproject.org/files/ENCFF003XSX/@@download/ENCFF003XSX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF046NUR bed narrowPeak optimal idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF206AYJ, ENCFF339QMW, ENCFF419RSJ, ENCFF453RHM 47824 ENCODE Processing Pipeline 4700e31f3cbdbcd6d18ac1e5810d30b1 https://www.encodeproject.org/files/ENCFF046NUR/@@download/ENCFF046NUR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF024RBZ bigBed narrowPeak optimal idr thresholded peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF046NUR 148764 ENCODE Processing Pipeline 39922d5cd6393b66678cf2a57d7b364e https://www.encodeproject.org/files/ENCFF024RBZ/@@download/ENCFF024RBZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF440WEY fastq reads ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1798336713 Bradley Bernstein, Broad 9a2620be659faf88c8c07a8555280d98 SRA:SRR5832774 https://www.encodeproject.org/files/ENCFF440WEY/@@download/ENCFF440WEY.fastq.gz Illumina HiSeq 2500 /files/ENCFF207NLW/, /files/ENCFF253BJA/, /files/ENCFF549ALF/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF855FAY fastq reads ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 2 76 single-ended 1538202795 Bradley Bernstein, Broad faf805a502697834f131e10fcb8f0a85 SRA:SRR5832773 https://www.encodeproject.org/files/ENCFF855FAY/@@download/ENCFF855FAY.fastq.gz Illumina HiSeq 2500 /files/ENCFF280YFB/, /files/ENCFF600AGN/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF371AJH fastq reads ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1049420321 Bradley Bernstein, Broad 0ffa081e354504693284e20f08718c7e SRA:SRR5832775 https://www.encodeproject.org/files/ENCFF371AJH/@@download/ENCFF371AJH.fastq.gz Illumina HiSeq 2500 /files/ENCFF280YFB/, /files/ENCFF600AGN/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF546BUY bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 76 ENCFF371AJH, ENCFF643CGH, ENCFF855FAY 1314627296 ENCODE Processing Pipeline 5905af3d3f490580553c3a465f1acb48 https://www.encodeproject.org/files/ENCFF546BUY/@@download/ENCFF546BUY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF176KZS bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 76 ENCFF440WEY, ENCFF643CGH 1736197620 ENCODE Processing Pipeline bb2926c560a39a964325b86f64a599d3 https://www.encodeproject.org/files/ENCFF176KZS/@@download/ENCFF176KZS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF579OZA bam unfiltered alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF440WEY, ENCFF643CGH 2086698328 ENCODE Processing Pipeline 3f1d27323dec2bd9f90661589c4678ea https://www.encodeproject.org/files/ENCFF579OZA/@@download/ENCFF579OZA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF269TFM bam unfiltered alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF371AJH, ENCFF643CGH, ENCFF855FAY 2419786482 ENCODE Processing Pipeline 44d3159cc76a467edf72d26618d8e705 https://www.encodeproject.org/files/ENCFF269TFM/@@download/ENCFF269TFM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF012EWE bigWig signal p-value ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF176KZS, ENCFF248XON, ENCFF882WXC 1485405434 ENCODE Processing Pipeline 8e4fcbc6ea6e4c112a244160f8243e4d https://www.encodeproject.org/files/ENCFF012EWE/@@download/ENCFF012EWE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF799LZZ bigWig fold change over control ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF248XON, ENCFF546BUY, ENCFF882WXC 1150402025 ENCODE Processing Pipeline 97301998c46729c4390dc9fe110f8d30 https://www.encodeproject.org/files/ENCFF799LZZ/@@download/ENCFF799LZZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF092PYY bigBed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF661MDB 11761118 ENCODE Processing Pipeline 04f518954925497e6626734abc6134dd https://www.encodeproject.org/files/ENCFF092PYY/@@download/ENCFF092PYY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF132OWJ bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 76 ENCFF440WEY, ENCFF807MUK 1735183324 ENCODE Processing Pipeline 9fe1392f35d8ef4cb519c34166f69820 https://www.encodeproject.org/files/ENCFF132OWJ/@@download/ENCFF132OWJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF334EZY bigWig signal p-value ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF176KZS, ENCFF248XON, ENCFF546BUY, ENCFF882WXC 1819573869 ENCODE Processing Pipeline 8252696ded3a399144c9cdffae47c80a https://www.encodeproject.org/files/ENCFF334EZY/@@download/ENCFF334EZY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF370ZKK bigWig fold change over control ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF176KZS, ENCFF248XON, ENCFF882WXC 1365642548 ENCODE Processing Pipeline d50649afa8e5b3d69881a9d3d15a4322 https://www.encodeproject.org/files/ENCFF370ZKK/@@download/ENCFF370ZKK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF300TSI bigWig fold change over control ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF176KZS, ENCFF248XON, ENCFF546BUY, ENCFF882WXC 1823444219 ENCODE Processing Pipeline cc8d0a7c4dceff6039f41f8858d4956c https://www.encodeproject.org/files/ENCFF300TSI/@@download/ENCFF300TSI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF022YVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF310IQK 1375514 ENCODE Processing Pipeline e2c6d9795e2eb8ff9151688fde29914d https://www.encodeproject.org/files/ENCFF022YVZ/@@download/ENCFF022YVZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF044VWD bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 76 ENCFF371AJH, ENCFF807MUK, ENCFF855FAY 1313952349 ENCODE Processing Pipeline 830ab558eba326d415345807179102a9 https://www.encodeproject.org/files/ENCFF044VWD/@@download/ENCFF044VWD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF340KBU bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF176KZS, ENCFF248XON, ENCFF882WXC 5980106 ENCODE Processing Pipeline b7257e5ccf9d3d48b1ebe7014d95db9e https://www.encodeproject.org/files/ENCFF340KBU/@@download/ENCFF340KBU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF842ODT bigBed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF340KBU 11914839 ENCODE Processing Pipeline cc3f3434fa38b97bbce0aaac30beebd5 https://www.encodeproject.org/files/ENCFF842ODT/@@download/ENCFF842ODT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF523PRU bam unfiltered alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 76 ENCFF440WEY, ENCFF807MUK 2083037831 ENCODE Processing Pipeline af3190b2a79a7f0cabb6b16fcb41d3db https://www.encodeproject.org/files/ENCFF523PRU/@@download/ENCFF523PRU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF052YCT bam unfiltered alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 76 ENCFF371AJH, ENCFF807MUK, ENCFF855FAY 2417003963 ENCODE Processing Pipeline 73062bdae74724e0d345dfe669dd860c https://www.encodeproject.org/files/ENCFF052YCT/@@download/ENCFF052YCT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF670CBJ bigWig signal p-value ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF248XON, ENCFF546BUY, ENCFF882WXC 1418714355 ENCODE Processing Pipeline 372cf92541d62f747850906beacba572 https://www.encodeproject.org/files/ENCFF670CBJ/@@download/ENCFF670CBJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF679JWZ bigBed narrowPeak optimal idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF846FYU 1410040 ENCODE Processing Pipeline 8ed03d43363d737fde4106baa83a1035 https://www.encodeproject.org/files/ENCFF679JWZ/@@download/ENCFF679JWZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF661MDB bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF248XON, ENCFF546BUY, ENCFF882WXC 6040912 ENCODE Processing Pipeline a4cb525e429364f54f2f0c7de41a7be8 https://www.encodeproject.org/files/ENCFF661MDB/@@download/ENCFF661MDB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF892IJL bigBed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF141UZZ 11996370 ENCODE Processing Pipeline 9195e0e7d605bbbf4a66570df40eab49 https://www.encodeproject.org/files/ENCFF892IJL/@@download/ENCFF892IJL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF141UZZ bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF176KZS, ENCFF248XON, ENCFF546BUY, ENCFF882WXC 6642770 ENCODE Processing Pipeline 16213ef39369b7557a7e8f22c47f4a74 https://www.encodeproject.org/files/ENCFF141UZZ/@@download/ENCFF141UZZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF310IQK bed narrowPeak conservative idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF141UZZ, ENCFF340KBU, ENCFF419RSJ, ENCFF661MDB 774796 ENCODE Processing Pipeline d499772b75e61d9e4a34aacf1c7c5c9f https://www.encodeproject.org/files/ENCFF310IQK/@@download/ENCFF310IQK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF846FYU bed narrowPeak optimal idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF141UZZ, ENCFF340KBU, ENCFF419RSJ, ENCFF661MDB 800808 ENCODE Processing Pipeline e3d9ae45ef043ed3309e9709d61d9c1b https://www.encodeproject.org/files/ENCFF846FYU/@@download/ENCFF846FYU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF852KTJ bigBed narrowPeak optimal idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF776XRJ 1405413 ENCODE Processing Pipeline 7ae9e3123a617184ccaf6a441e6c8676 https://www.encodeproject.org/files/ENCFF852KTJ/@@download/ENCFF852KTJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF911ZCT bigWig fold change over control ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF044VWD, ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 1807892527 ENCODE Processing Pipeline daf56b42f1bc8d579cdf5b4d0d6285db https://www.encodeproject.org/files/ENCFF911ZCT/@@download/ENCFF911ZCT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF642NIW bigBed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF345DIK 11900109 ENCODE Processing Pipeline 180505c650ca1a954a3961f831e19d6f https://www.encodeproject.org/files/ENCFF642NIW/@@download/ENCFF642NIW.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF776XRJ bed narrowPeak optimal idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF345DIK, ENCFF930XLW, ENCFF996USV 797130 ENCODE Processing Pipeline 84d8d7eb11a665074e4b30090ff0197d https://www.encodeproject.org/files/ENCFF776XRJ/@@download/ENCFF776XRJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF930XLW bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF044VWD, ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 6640442 ENCODE Processing Pipeline ad963195d159bd72a2fdb15d8472eec3 https://www.encodeproject.org/files/ENCFF930XLW/@@download/ENCFF930XLW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF730MHI bed narrowPeak conservative idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF345DIK, ENCFF930XLW, ENCFF996USV 771607 ENCODE Processing Pipeline eb38f18b91de19c6aafeca7eb8670dfb https://www.encodeproject.org/files/ENCFF730MHI/@@download/ENCFF730MHI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF353ZMT bigWig signal p-value ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF044VWD, ENCFF812MYK, ENCFF831TJC 1550584727 ENCODE Processing Pipeline 7e86703645c52fa17b29eed48457f6b4 https://www.encodeproject.org/files/ENCFF353ZMT/@@download/ENCFF353ZMT.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF027KWR bigWig signal p-value ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 1487024027 ENCODE Processing Pipeline a61a5eedcc6250db16af7548ae996b43 https://www.encodeproject.org/files/ENCFF027KWR/@@download/ENCFF027KWR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF701VRK bigWig signal p-value ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF044VWD, ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 1778341225 ENCODE Processing Pipeline c214b043f6bcb61d746c7583095423da https://www.encodeproject.org/files/ENCFF701VRK/@@download/ENCFF701VRK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF903NVK bigWig fold change over control ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF044VWD, ENCFF812MYK, ENCFF831TJC 1153397034 ENCODE Processing Pipeline e78e03e39ef17532be086886a1924d81 https://www.encodeproject.org/files/ENCFF903NVK/@@download/ENCFF903NVK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF809OPV bigWig fold change over control ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 1373959566 ENCODE Processing Pipeline 809dbc66bdcb2e1b61ccb950bd230677 https://www.encodeproject.org/files/ENCFF809OPV/@@download/ENCFF809OPV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF092FSL bigBed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF996USV 11746753 ENCODE Processing Pipeline f929953f6b43b55533c70d4d977b14e7 https://www.encodeproject.org/files/ENCFF092FSL/@@download/ENCFF092FSL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF020QRE bigBed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF930XLW 11983858 ENCODE Processing Pipeline fc0d6b85cff0c3f7d715a37fac7cb29d https://www.encodeproject.org/files/ENCFF020QRE/@@download/ENCFF020QRE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF996USV bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF044VWD, ENCFF812MYK, ENCFF831TJC 6041227 ENCODE Processing Pipeline 454f7046e17bdacfc161100d68b14f20 https://www.encodeproject.org/files/ENCFF996USV/@@download/ENCFF996USV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF345DIK bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 5978713 ENCODE Processing Pipeline a57a7b2e3e30800333e3ca4060d723c6 https://www.encodeproject.org/files/ENCFF345DIK/@@download/ENCFF345DIK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF724FWM bigBed narrowPeak conservative idr thresholded peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF730MHI 1372318 ENCODE Processing Pipeline c814898237bd6bd48fff2785202ad76a https://www.encodeproject.org/files/ENCFF724FWM/@@download/ENCFF724FWM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF016LTD fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF517FFT 3364182196 Michael Snyder, Stanford d4470fe9670066f18625d9acbdbee48f https://www.encodeproject.org/files/ENCFF016LTD/@@download/ENCFF016LTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF517FFT fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF016LTD 3311966435 Michael Snyder, Stanford 6f86c6d88d8940699029433534d724ab https://www.encodeproject.org/files/ENCFF517FFT/@@download/ENCFF517FFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF303DWC bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF807MUK 6741865984 ENCODE Processing Pipeline 7362526d2f6b45820b8c6f5916e0d4aa https://www.encodeproject.org/files/ENCFF303DWC/@@download/ENCFF303DWC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF146EZL bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF807MUK 5254021264 ENCODE Processing Pipeline 7352af532b9174262bc87b357ceef087 https://www.encodeproject.org/files/ENCFF146EZL/@@download/ENCFF146EZL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF727OFM bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF643CGH 6749753298 ENCODE Processing Pipeline cfb104d868b20cadea53450da321af1b https://www.encodeproject.org/files/ENCFF727OFM/@@download/ENCFF727OFM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF403QBQ bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF643CGH 5264434471 ENCODE Processing Pipeline 39977644b3ed494644dba98e48c97324 https://www.encodeproject.org/files/ENCFF403QBQ/@@download/ENCFF403QBQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF305EOQ bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF403QBQ, ENCFF879YMO 1287898689 ENCODE Processing Pipeline 43d8bd27b880e38247f1df3844701c98 https://www.encodeproject.org/files/ENCFF305EOQ/@@download/ENCFF305EOQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF296OUC bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF403QBQ, ENCFF879YMO 1213737273 ENCODE Processing Pipeline 65f401a45b5a8706f065df649bf258af https://www.encodeproject.org/files/ENCFF296OUC/@@download/ENCFF296OUC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF416NVB bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF403QBQ, ENCFF879YMO 6177683 ENCODE Processing Pipeline 2d63344a9a995b694219b116bf152067 https://www.encodeproject.org/files/ENCFF416NVB/@@download/ENCFF416NVB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF253MGX bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF416NVB 11310683 ENCODE Processing Pipeline 4f8dcd15020042f4fa4c0613f61ce6d2 https://www.encodeproject.org/files/ENCFF253MGX/@@download/ENCFF253MGX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF561NID fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 1 101 paired-ended 1 ENCFF222LNP 3264906697 Michael Snyder, Stanford 32f20afdd891fbd5a6dd988519319686 https://www.encodeproject.org/files/ENCFF561NID/@@download/ENCFF561NID.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF222LNP fastq reads ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 1 101 paired-ended 2 ENCFF561NID 3274351538 Michael Snyder, Stanford ec1e65e8d92e85c0af49852a50cd2dbe https://www.encodeproject.org/files/ENCFF222LNP/@@download/ENCFF222LNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF547OWH bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF807MUK 6342856991 ENCODE Processing Pipeline 584f03637fcf57ec592d9efaf6d3dfd1 https://www.encodeproject.org/files/ENCFF547OWH/@@download/ENCFF547OWH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF823JVZ bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF807MUK 5410949542 ENCODE Processing Pipeline a9201c29bf684387ae8ad6e261528983 https://www.encodeproject.org/files/ENCFF823JVZ/@@download/ENCFF823JVZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF307KLQ bam unfiltered alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF643CGH 6349594826 ENCODE Processing Pipeline 3d4cf1b428abc6a96eab52d6e5b6a837 https://www.encodeproject.org/files/ENCFF307KLQ/@@download/ENCFF307KLQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF759BKF bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF643CGH 5418413196 ENCODE Processing Pipeline c207a77e45443349109eec9933dfd0d7 https://www.encodeproject.org/files/ENCFF759BKF/@@download/ENCFF759BKF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF419CYW bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF574BGV, ENCFF759BKF 982238376 ENCODE Processing Pipeline 6d47ffd4cd5b6c812d027d308e879996 https://www.encodeproject.org/files/ENCFF419CYW/@@download/ENCFF419CYW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF996FFB bigBed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF843GOD 168847 ENCODE Processing Pipeline f48834dd522b8b54c42d6ba1b51c9a00 https://www.encodeproject.org/files/ENCFF996FFB/@@download/ENCFF996FFB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF010MQT bigBed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF475DID 359591 ENCODE Processing Pipeline df3e6e47ab7df1af032b574915f54e9b https://www.encodeproject.org/files/ENCFF010MQT/@@download/ENCFF010MQT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF716ASB bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF403QBQ, ENCFF574BGV, ENCFF759BKF, ENCFF879YMO 2070462289 ENCODE Processing Pipeline eab20b64150c7b264492a6985f43efb1 https://www.encodeproject.org/files/ENCFF716ASB/@@download/ENCFF716ASB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF475DID bed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF106TJI, ENCFF416NVB, ENCFF419RSJ, ENCFF644APU 174652 ENCODE Processing Pipeline 95ab4460e261576f419f41ea108fb66c https://www.encodeproject.org/files/ENCFF475DID/@@download/ENCFF475DID.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF843GOD bed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF106TJI, ENCFF416NVB, ENCFF419RSJ, ENCFF644APU 69285 ENCODE Processing Pipeline 20a479f2015d50c44ae37697bcc6a54e https://www.encodeproject.org/files/ENCFF843GOD/@@download/ENCFF843GOD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF947NIE bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF146EZL, ENCFF287SKW, ENCFF823JVZ, ENCFF941TZZ 1844821405 ENCODE Processing Pipeline 171c07baecf4883a4366885301a47006 https://www.encodeproject.org/files/ENCFF947NIE/@@download/ENCFF947NIE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF644APU bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF403QBQ, ENCFF574BGV, ENCFF759BKF, ENCFF879YMO 7166735 ENCODE Processing Pipeline 884ae742bcc1517395fdb901a704f5c8 https://www.encodeproject.org/files/ENCFF644APU/@@download/ENCFF644APU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF435MMO bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF106TJI 13382070 ENCODE Processing Pipeline 111baac998fbcbc9ee247f071ae561df https://www.encodeproject.org/files/ENCFF435MMO/@@download/ENCFF435MMO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF547TZX bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF574BGV, ENCFF759BKF 1286209839 ENCODE Processing Pipeline e71b3011b51326eb9afde4580c8ef265 https://www.encodeproject.org/files/ENCFF547TZX/@@download/ENCFF547TZX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF434YEG bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF403QBQ, ENCFF574BGV, ENCFF759BKF, ENCFF879YMO 2274989938 ENCODE Processing Pipeline 96d2a820a5d450b82450db26b1b1f19f https://www.encodeproject.org/files/ENCFF434YEG/@@download/ENCFF434YEG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF106TJI bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF574BGV, ENCFF759BKF 6487229 ENCODE Processing Pipeline da57736354c52fe74c2da8a8dce5e4fa https://www.encodeproject.org/files/ENCFF106TJI/@@download/ENCFF106TJI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF631XNO bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF644APU 13358224 ENCODE Processing Pipeline fdcb092996fba19164a1e9ae3995a2d1 https://www.encodeproject.org/files/ENCFF631XNO/@@download/ENCFF631XNO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF480CCO bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 6211209 ENCODE Processing Pipeline d621c8803b3601df8479e24f0a4b7c6b https://www.encodeproject.org/files/ENCFF480CCO/@@download/ENCFF480CCO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF793MJC bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF287SKW, ENCFF823JVZ 1336366000 ENCODE Processing Pipeline 58085950731d770d9474c52dd7659481 https://www.encodeproject.org/files/ENCFF793MJC/@@download/ENCFF793MJC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF131RRA bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 1251916365 ENCODE Processing Pipeline b63c61a911296b75dab5040145786c0f https://www.encodeproject.org/files/ENCFF131RRA/@@download/ENCFF131RRA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF812WGU bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF287SKW, ENCFF823JVZ 1196090193 ENCODE Processing Pipeline f66b4bfc878a0405b00fd4a7a674c865 https://www.encodeproject.org/files/ENCFF812WGU/@@download/ENCFF812WGU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF996DZN bigWig fold change over control ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF146EZL, ENCFF287SKW, ENCFF823JVZ, ENCFF941TZZ 2323495484 ENCODE Processing Pipeline e0c78d2a9906af8afcec0f020b9ea104 https://www.encodeproject.org/files/ENCFF996DZN/@@download/ENCFF996DZN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF038RJE bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF287SKW, ENCFF823JVZ 6497442 ENCODE Processing Pipeline 68c153d139ffdab16fcf80ba175f90ba https://www.encodeproject.org/files/ENCFF038RJE/@@download/ENCFF038RJE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF446HSS bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF480CCO 11282220 ENCODE Processing Pipeline 28a4d7114cab2785401def6cd416544d https://www.encodeproject.org/files/ENCFF446HSS/@@download/ENCFF446HSS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF887XGV bigWig signal p-value ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 1040017887 ENCODE Processing Pipeline a320784774f71da76e5d0ce88d95742f https://www.encodeproject.org/files/ENCFF887XGV/@@download/ENCFF887XGV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF006TOI bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF833YUF 13332983 ENCODE Processing Pipeline 0e5f75f38dcf62bc1dfcc355a9e95060 https://www.encodeproject.org/files/ENCFF006TOI/@@download/ENCFF006TOI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF431XRU bed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF001TDO, ENCFF038RJE, ENCFF480CCO, ENCFF833YUF 68420 ENCODE Processing Pipeline 46d09e5b04470b26a35ffe2252a74352 https://www.encodeproject.org/files/ENCFF431XRU/@@download/ENCFF431XRU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF589LEH bigBed narrowPeak conservative idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF431XRU 166607 ENCODE Processing Pipeline 6bb60dcc82e359e9a48469a00ebb4aeb https://www.encodeproject.org/files/ENCFF589LEH/@@download/ENCFF589LEH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF833YUF bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF146EZL, ENCFF287SKW, ENCFF823JVZ, ENCFF941TZZ 7166150 ENCODE Processing Pipeline 5bcbd2d631fd49f28071e1dad6d916de https://www.encodeproject.org/files/ENCFF833YUF/@@download/ENCFF833YUF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF403LNM bigBed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 ENCFF038RJE 13376732 ENCODE Processing Pipeline 49865cd520729ce90c70576c8495c1de https://www.encodeproject.org/files/ENCFF403LNM/@@download/ENCFF403LNM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF539CKD bed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF001TDO, ENCFF038RJE, ENCFF480CCO, ENCFF833YUF 175352 ENCODE Processing Pipeline 7d363f200e0f6652249cddc58feb5f2d https://www.encodeproject.org/files/ENCFF539CKD/@@download/ENCFF539CKD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF197OXB bigBed narrowPeak optimal idr thresholded peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1, 4 ENCFF539CKD 360195 ENCODE Processing Pipeline 4b993913b9ad94527c3bf98247169294 https://www.encodeproject.org/files/ENCFF197OXB/@@download/ENCFF197OXB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF011RLG fastq reads ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF268FKS 3273231977 Michael Snyder, Stanford a5f42e0ee61cf2fd95c89b6c0a415d3e SRA:SRR6213704 https://www.encodeproject.org/files/ENCFF011RLG/@@download/ENCFF011RLG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF237ACY fastq reads ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF258AHN 3669055019 Michael Snyder, Stanford e464708f47e20c0be80eacecabbb8959 SRA:SRR6213703 https://www.encodeproject.org/files/ENCFF237ACY/@@download/ENCFF237ACY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF268FKS fastq reads ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF011RLG 3198644353 Michael Snyder, Stanford 1174de2c9af89c2ab622a9894019ba5d SRA:SRR6213704 https://www.encodeproject.org/files/ENCFF268FKS/@@download/ENCFF268FKS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF258AHN fastq reads ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF237ACY 3762180185 Michael Snyder, Stanford 2fec2a495c6f9a28a1dac769c9191e35 SRA:SRR6213703 https://www.encodeproject.org/files/ENCFF258AHN/@@download/ENCFF258AHN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF915OVA bam unfiltered alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF011RLG, ENCFF268FKS, ENCFF807MUK 6551972357 ENCODE Processing Pipeline 8c400677b3297d8a0983eb0776c52d14 https://www.encodeproject.org/files/ENCFF915OVA/@@download/ENCFF915OVA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF392OKA bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF011RLG, ENCFF268FKS, ENCFF807MUK 5435432590 ENCODE Processing Pipeline e921a38955c523863c4f3ff90ca38361 https://www.encodeproject.org/files/ENCFF392OKA/@@download/ENCFF392OKA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF406IXK bam unfiltered alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF011RLG, ENCFF268FKS, ENCFF643CGH 6559506657 ENCODE Processing Pipeline a2372afc184b2e4fecee5cfe4a4a695e https://www.encodeproject.org/files/ENCFF406IXK/@@download/ENCFF406IXK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF024XFP bam unfiltered alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF237ACY, ENCFF258AHN, ENCFF807MUK 7456313030 ENCODE Processing Pipeline 9db3cee8ef5e5c3aae57c390e4c79aa2 https://www.encodeproject.org/files/ENCFF024XFP/@@download/ENCFF024XFP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF055KHV bam unfiltered alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF237ACY, ENCFF258AHN, ENCFF643CGH 7465684951 ENCODE Processing Pipeline 06ef8e1fc7726756f68855659adaccad https://www.encodeproject.org/files/ENCFF055KHV/@@download/ENCFF055KHV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF907EKW bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF011RLG, ENCFF268FKS, ENCFF643CGH 5439086585 ENCODE Processing Pipeline 1ecc25389cbbbfd004846cbfcfcb9f65 https://www.encodeproject.org/files/ENCFF907EKW/@@download/ENCFF907EKW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF478LIY bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF237ACY, ENCFF258AHN, ENCFF807MUK 6223585302 ENCODE Processing Pipeline 4f4fb72a11c67847dad40c752d53db83 https://www.encodeproject.org/files/ENCFF478LIY/@@download/ENCFF478LIY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF193QGE bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF237ACY, ENCFF258AHN, ENCFF643CGH 6228175980 ENCODE Processing Pipeline eb7152da86ddbead6f0a9d60e8530877 https://www.encodeproject.org/files/ENCFF193QGE/@@download/ENCFF193QGE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF589SRV bigWig signal p-value ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF392OKA 1502874477 ENCODE Processing Pipeline b0a30ac0c2aa20c0e1749fdb3f007979 https://www.encodeproject.org/files/ENCFF589SRV/@@download/ENCFF589SRV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF613GOI bigWig signal p-value ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF478LIY 1529491129 ENCODE Processing Pipeline 20765b4c7d039da79c9bbfe6ead08d2e https://www.encodeproject.org/files/ENCFF613GOI/@@download/ENCFF613GOI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF792AWF bigWig signal p-value ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF392OKA, ENCFF478LIY 1972963314 ENCODE Processing Pipeline 01a3bfdd1f9fc86a40c0c9c46adfe6d4 https://www.encodeproject.org/files/ENCFF792AWF/@@download/ENCFF792AWF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF221OMO bigWig fold change over control ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF392OKA 1493453127 ENCODE Processing Pipeline 2bba9de4a693c4873af62467e3ec5bec https://www.encodeproject.org/files/ENCFF221OMO/@@download/ENCFF221OMO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF127JVA bigWig fold change over control ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF478LIY 1621440589 ENCODE Processing Pipeline 1c030b9b9f3ca37672a5f36b65675ea7 https://www.encodeproject.org/files/ENCFF127JVA/@@download/ENCFF127JVA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF600MXR bigWig fold change over control ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF392OKA, ENCFF478LIY 2138348357 ENCODE Processing Pipeline 73064835d391ac6024d0b445d83ea6f2 https://www.encodeproject.org/files/ENCFF600MXR/@@download/ENCFF600MXR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF655FIY bigBed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF910ZAR 13213462 ENCODE Processing Pipeline 66f6f989b7ca225c52427f089874733a https://www.encodeproject.org/files/ENCFF655FIY/@@download/ENCFF655FIY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF277FWO bigBed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF387NRB 13221632 ENCODE Processing Pipeline 46155f108c2a95cd7fec60dce49caa9c https://www.encodeproject.org/files/ENCFF277FWO/@@download/ENCFF277FWO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF910ZAR bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF392OKA 6877130 ENCODE Processing Pipeline 67a529155a6326957bc85e0d17058c3a https://www.encodeproject.org/files/ENCFF910ZAR/@@download/ENCFF910ZAR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF387NRB bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF478LIY 6979954 ENCODE Processing Pipeline 463b08ba5a9165f99d7e2e37f49d2674 https://www.encodeproject.org/files/ENCFF387NRB/@@download/ENCFF387NRB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF865LZW bigBed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF749DKD 13083640 ENCODE Processing Pipeline 37b665a19df3f67d65cca4d60308d575 https://www.encodeproject.org/files/ENCFF865LZW/@@download/ENCFF865LZW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF157AOG bed narrowPeak conservative idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF387NRB, ENCFF749DKD, ENCFF910ZAR 162801 ENCODE Processing Pipeline 83198a349564c0c268048f37c8c3853c https://www.encodeproject.org/files/ENCFF157AOG/@@download/ENCFF157AOG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF728MIJ bed narrowPeak optimal idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF387NRB, ENCFF749DKD, ENCFF910ZAR 194681 ENCODE Processing Pipeline 7bc55708af4ac21bfca630f4e6e3c3ce https://www.encodeproject.org/files/ENCFF728MIJ/@@download/ENCFF728MIJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF806JHH bigBed narrowPeak optimal idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF728MIJ 392396 ENCODE Processing Pipeline 9564402ee55cf85ec5c7d9cb88e3ed3a https://www.encodeproject.org/files/ENCFF806JHH/@@download/ENCFF806JHH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF749DKD bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF392OKA, ENCFF478LIY 7240985 ENCODE Processing Pipeline 116480a049a986f1b5a43fc738c51b09 https://www.encodeproject.org/files/ENCFF749DKD/@@download/ENCFF749DKD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF115FOG bigBed narrowPeak conservative idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF157AOG 345712 ENCODE Processing Pipeline ccdae51d0562f9cc65e3b36a99a21e53 https://www.encodeproject.org/files/ENCFF115FOG/@@download/ENCFF115FOG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF024XDD bigWig signal p-value ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907EKW 1259941323 ENCODE Processing Pipeline 6b2a3c3d125508bf4e261290291c8bec https://www.encodeproject.org/files/ENCFF024XDD/@@download/ENCFF024XDD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF049GER bigWig signal p-value ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193QGE 1427159480 ENCODE Processing Pipeline 4300f3d230cdc796005626c2b8a382ae https://www.encodeproject.org/files/ENCFF049GER/@@download/ENCFF049GER.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF025TTK bigWig signal p-value ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF193QGE, ENCFF907EKW 1945277458 ENCODE Processing Pipeline 36e6b8ab110eca5fe93df571f26daf72 https://www.encodeproject.org/files/ENCFF025TTK/@@download/ENCFF025TTK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF335BIF bigWig fold change over control ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907EKW 1446387247 ENCODE Processing Pipeline 4207998b47fbbb3a000242b4637aabcb https://www.encodeproject.org/files/ENCFF335BIF/@@download/ENCFF335BIF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF102UID bigWig fold change over control ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193QGE 1623011632 ENCODE Processing Pipeline bcff08c2304440ad83d7973ffa4c3bbd https://www.encodeproject.org/files/ENCFF102UID/@@download/ENCFF102UID.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF672AFU bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907EKW 6873327 ENCODE Processing Pipeline 5311636ac49bdb06f43ae42108a06151 https://www.encodeproject.org/files/ENCFF672AFU/@@download/ENCFF672AFU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF117JAJ bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193QGE 6980563 ENCODE Processing Pipeline 03f546f769c01ce54b3d8a06a9be87cd https://www.encodeproject.org/files/ENCFF117JAJ/@@download/ENCFF117JAJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF811OWM bigBed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF184VDY 13097001 ENCODE Processing Pipeline 27b25199fc479dbad6147fa22407e03c https://www.encodeproject.org/files/ENCFF811OWM/@@download/ENCFF811OWM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF407ECM bigBed narrowPeak conservative idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF788AFZ 347117 ENCODE Processing Pipeline dde8e729bf12d57546ede08d30c9f14f https://www.encodeproject.org/files/ENCFF407ECM/@@download/ENCFF407ECM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF586TXV bigBed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF117JAJ 13232443 ENCODE Processing Pipeline 146a3ef0aad8263240836050c31d5d3d https://www.encodeproject.org/files/ENCFF586TXV/@@download/ENCFF586TXV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF814YLC bed narrowPeak optimal idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF117JAJ, ENCFF184VDY, ENCFF419RSJ, ENCFF672AFU 195075 ENCODE Processing Pipeline 894444a2c8e916db97173fba932812de https://www.encodeproject.org/files/ENCFF814YLC/@@download/ENCFF814YLC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF221MID bigBed narrowPeak optimal idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF814YLC 394514 ENCODE Processing Pipeline 59029acdd9030590b5e0d8d8fb5da8f3 https://www.encodeproject.org/files/ENCFF221MID/@@download/ENCFF221MID.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF684EAQ bigWig fold change over control ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF193QGE, ENCFF907EKW 2107461587 ENCODE Processing Pipeline a6469ad57c2fcf2f729c4b5b85f63f3d https://www.encodeproject.org/files/ENCFF684EAQ/@@download/ENCFF684EAQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF227GEM bigBed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF672AFU 13218447 ENCODE Processing Pipeline 31b64281c6eeedd06f4ab318676af2c9 https://www.encodeproject.org/files/ENCFF227GEM/@@download/ENCFF227GEM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF184VDY bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF193QGE, ENCFF907EKW 7245341 ENCODE Processing Pipeline d62d1ef0a538c02f78d2b32261636933 https://www.encodeproject.org/files/ENCFF184VDY/@@download/ENCFF184VDY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF788AFZ bed narrowPeak conservative idr thresholded peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF117JAJ, ENCFF184VDY, ENCFF419RSJ, ENCFF672AFU 162703 ENCODE Processing Pipeline 02dba69313dfbe216ee99fd0a0888cf1 https://www.encodeproject.org/files/ENCFF788AFZ/@@download/ENCFF788AFZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF015DNC fastq reads ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 1 36 paired-ended 1 ENCFF830SEM 614060965 Bradley Bernstein, Broad f738f741dcc6aeeca05a26096a9dc0e7 https://www.encodeproject.org/files/ENCFF015DNC/@@download/ENCFF015DNC.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF830SEM fastq reads ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 1 25 paired-ended 2 ENCFF015DNC 483032988 Bradley Bernstein, Broad e9cd0bb2a0ff06b473f330144ae7c2cc https://www.encodeproject.org/files/ENCFF830SEM/@@download/ENCFF830SEM.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF318EXS fastq reads ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 1 36 paired-ended 1 ENCFF547YLZ 665933092 Bradley Bernstein, Broad edb9aecb7a1a1f7f2a1e1d8f49feef63 https://www.encodeproject.org/files/ENCFF318EXS/@@download/ENCFF318EXS.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption mismatched status, experiment not submitted to GEO ENCFF547YLZ fastq reads ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 1 25 paired-ended 2 ENCFF318EXS 530099630 Bradley Bernstein, Broad 3f8a6d97786a984885bca9ecdd4df4a2 https://www.encodeproject.org/files/ENCFF547YLZ/@@download/ENCFF547YLZ.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF847EYF bam unfiltered alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 36 ENCFF318EXS, ENCFF807MUK 946635082 ENCODE Processing Pipeline 1d4c68caa7bb26bcdc3b327440009a44 https://www.encodeproject.org/files/ENCFF847EYF/@@download/ENCFF847EYF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF339ORA bam unfiltered alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 36 ENCFF015DNC, ENCFF807MUK 904719014 ENCODE Processing Pipeline c1ebf4162da67f7326f9a37bcbd4cecc https://www.encodeproject.org/files/ENCFF339ORA/@@download/ENCFF339ORA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF789IXD bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 36 ENCFF015DNC, ENCFF807MUK 621916170 ENCODE Processing Pipeline bcc9149b6d6eb00cf8c4c98af6afa95a https://www.encodeproject.org/files/ENCFF789IXD/@@download/ENCFF789IXD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF787LCO bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 36 ENCFF318EXS, ENCFF807MUK 606109653 ENCODE Processing Pipeline a3bc43d5f809d1b0c30ac3c778069d03 https://www.encodeproject.org/files/ENCFF787LCO/@@download/ENCFF787LCO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF277VUA bam unfiltered alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 36 ENCFF318EXS, ENCFF643CGH 952882751 ENCODE Processing Pipeline 55c00ef4f46f71e7435158e127ced18d https://www.encodeproject.org/files/ENCFF277VUA/@@download/ENCFF277VUA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF611QGZ bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 36 ENCFF015DNC, ENCFF643CGH 621608259 ENCODE Processing Pipeline f044253a1825a872e329059ea4889279 https://www.encodeproject.org/files/ENCFF611QGZ/@@download/ENCFF611QGZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF321SED bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 36 ENCFF318EXS, ENCFF643CGH 605801460 ENCODE Processing Pipeline 915fe1015684e325f75ad43b777d59e4 https://www.encodeproject.org/files/ENCFF321SED/@@download/ENCFF321SED.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF083RPP bam unfiltered alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 36 ENCFF015DNC, ENCFF643CGH 910294966 ENCODE Processing Pipeline 79b5e78ef4c4444de818fb6d69b6494a https://www.encodeproject.org/files/ENCFF083RPP/@@download/ENCFF083RPP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF363SUO bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO 5951451 ENCODE Processing Pipeline 86faffd04f45d2c295fe5c46174bbb15 https://www.encodeproject.org/files/ENCFF363SUO/@@download/ENCFF363SUO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF636HOL bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF789IXD 5894402 ENCODE Processing Pipeline c8b1cd66b16a7c6238ccd407bb53b7a8 https://www.encodeproject.org/files/ENCFF636HOL/@@download/ENCFF636HOL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF744VFX bigBed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF636HOL 13504711 ENCODE Processing Pipeline 0ac154e6dab4c8cdea2e77dd9ecb451a https://www.encodeproject.org/files/ENCFF744VFX/@@download/ENCFF744VFX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF710FWH bigWig signal p-value ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO 1016248907 ENCODE Processing Pipeline ae58ad4e1837ad2892d4cf3466259e4f https://www.encodeproject.org/files/ENCFF710FWH/@@download/ENCFF710FWH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF453FOJ bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO, ENCFF789IXD 6807763 ENCODE Processing Pipeline b5c16f399c7c73f15e05dd49b929e61c https://www.encodeproject.org/files/ENCFF453FOJ/@@download/ENCFF453FOJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF935KZO bigWig signal p-value ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO, ENCFF789IXD 1328065613 ENCODE Processing Pipeline 6a1ef1e8466cf27df75d3d9c5d16fc04 https://www.encodeproject.org/files/ENCFF935KZO/@@download/ENCFF935KZO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF669LSJ bigWig fold change over control ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF789IXD 946938837 ENCODE Processing Pipeline 4b949f845ccc69df06ebee98cf7a27b0 https://www.encodeproject.org/files/ENCFF669LSJ/@@download/ENCFF669LSJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF291WFQ bigWig fold change over control ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO 868126613 ENCODE Processing Pipeline 5ccd3d7730fc6c3c1869b6c561da08d2 https://www.encodeproject.org/files/ENCFF291WFQ/@@download/ENCFF291WFQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF298SWZ bigWig signal p-value ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF789IXD 1063640309 ENCODE Processing Pipeline 66909fe1d70866f614c7f6d87cfc5d2a https://www.encodeproject.org/files/ENCFF298SWZ/@@download/ENCFF298SWZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF392UOZ bigBed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF453FOJ 13376660 ENCODE Processing Pipeline 60e84b306cb7a6443795d0a7dea25fb2 https://www.encodeproject.org/files/ENCFF392UOZ/@@download/ENCFF392UOZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF964PGC bed narrowPeak conservative idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF001TDO, ENCFF363SUO, ENCFF453FOJ, ENCFF636HOL 16527 ENCODE Processing Pipeline e8875f1d91c4c02ae6b7a29f073ee995 https://www.encodeproject.org/files/ENCFF964PGC/@@download/ENCFF964PGC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF244FSV bigBed narrowPeak conservative idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF964PGC 114358 ENCODE Processing Pipeline bd4206dc7c6477048b501b8742f0bf3c https://www.encodeproject.org/files/ENCFF244FSV/@@download/ENCFF244FSV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF632KSP bigBed narrowPeak optimal idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF847HDW 116672 ENCODE Processing Pipeline d7b04f2e14ae45e7b8e1bddfd50f4b9c https://www.encodeproject.org/files/ENCFF632KSP/@@download/ENCFF632KSP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF305RTN bigWig fold change over control ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO, ENCFF789IXD 1278699904 ENCODE Processing Pipeline 4995fee8842e012e9539c31923d623e8 https://www.encodeproject.org/files/ENCFF305RTN/@@download/ENCFF305RTN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF915FZG bigBed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF363SUO 13480243 ENCODE Processing Pipeline 3ff2d8646386e21706eaec9812de3a62 https://www.encodeproject.org/files/ENCFF915FZG/@@download/ENCFF915FZG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF847HDW bed narrowPeak optimal idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF001TDO, ENCFF363SUO, ENCFF453FOJ, ENCFF636HOL 22834 ENCODE Processing Pipeline 90d94f1c3b2b0814801f992432540df3 https://www.encodeproject.org/files/ENCFF847HDW/@@download/ENCFF847HDW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF448LCY bigBed narrowPeak optimal idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF109EXK 115288 ENCODE Processing Pipeline 34fd0bb8b11975d5c2a89982091935a3 https://www.encodeproject.org/files/ENCFF448LCY/@@download/ENCFF448LCY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF018DTP bigWig fold change over control ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF321SED, ENCFF645CCA, ENCFF943MYJ 867082744 ENCODE Processing Pipeline 881264ae2a62fdf1830d574ce8fc2f26 https://www.encodeproject.org/files/ENCFF018DTP/@@download/ENCFF018DTP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF609DKJ bed narrowPeak conservative idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF847RHC, ENCFF936IRP, ENCFF944TIO 16787 ENCODE Processing Pipeline 72f89bd14cc6a6aeefaa6829fd082496 https://www.encodeproject.org/files/ENCFF609DKJ/@@download/ENCFF609DKJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF636TVU bigWig fold change over control ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF321SED, ENCFF611QGZ, ENCFF645CCA, ENCFF943MYJ 1293868415 ENCODE Processing Pipeline 87983bf9b9b064fd19f2202c5d1e3178 https://www.encodeproject.org/files/ENCFF636TVU/@@download/ENCFF636TVU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF829EOA bigBed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF847RHC 13467057 ENCODE Processing Pipeline 6676b9f5027b40833bd57bac45a676d4 https://www.encodeproject.org/files/ENCFF829EOA/@@download/ENCFF829EOA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF109EXK bed narrowPeak optimal idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF847RHC, ENCFF936IRP, ENCFF944TIO 22077 ENCODE Processing Pipeline bad77aaeea5245e2679a4d8e6aef4780 https://www.encodeproject.org/files/ENCFF109EXK/@@download/ENCFF109EXK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF401YEX bigWig signal p-value ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF321SED, ENCFF645CCA, ENCFF943MYJ 987984394 ENCODE Processing Pipeline 42c59ad216f380fe4ac1bb04d98b6cde https://www.encodeproject.org/files/ENCFF401YEX/@@download/ENCFF401YEX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF402MJZ bigWig signal p-value ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF321SED, ENCFF611QGZ, ENCFF645CCA, ENCFF943MYJ 1157630129 ENCODE Processing Pipeline 0dd9338abe74afe26b77321f4ffd9492 https://www.encodeproject.org/files/ENCFF402MJZ/@@download/ENCFF402MJZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF944TIO bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF611QGZ, ENCFF645CCA, ENCFF943MYJ 5922324 ENCODE Processing Pipeline 4da4174c6613ccb5433521cdab147e90 https://www.encodeproject.org/files/ENCFF944TIO/@@download/ENCFF944TIO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF749YOD bigBed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF936IRP 13405193 ENCODE Processing Pipeline c799dd1e6e8145a2d6e8d078a1caed9d https://www.encodeproject.org/files/ENCFF749YOD/@@download/ENCFF749YOD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF110OUO bigWig signal p-value ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF611QGZ, ENCFF645CCA, ENCFF943MYJ 999869532 ENCODE Processing Pipeline 0ab3c1aab317c8e3ef427be008de19ca https://www.encodeproject.org/files/ENCFF110OUO/@@download/ENCFF110OUO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF847RHC bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF321SED, ENCFF645CCA, ENCFF943MYJ 6005995 ENCODE Processing Pipeline c5fcb0b42b50ee2f1e2cb16dbf6a0879 https://www.encodeproject.org/files/ENCFF847RHC/@@download/ENCFF847RHC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF186FHS bigBed narrowPeak conservative idr thresholded peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF609DKJ 114731 ENCODE Processing Pipeline fb08c13832becf6fa39febca0d726a0f https://www.encodeproject.org/files/ENCFF186FHS/@@download/ENCFF186FHS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF346IPT bigWig fold change over control ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF611QGZ, ENCFF645CCA, ENCFF943MYJ 945566595 ENCODE Processing Pipeline c89a0c096a2187ae3c59e8aca35ce27c https://www.encodeproject.org/files/ENCFF346IPT/@@download/ENCFF346IPT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF936IRP bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1, 2 ENCFF321SED, ENCFF611QGZ, ENCFF645CCA, ENCFF943MYJ 6735995 ENCODE Processing Pipeline 5c2137b3ad4ca722c9bdca8d0f62dc2d https://www.encodeproject.org/files/ENCFF936IRP/@@download/ENCFF936IRP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF675XWT bigBed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF944TIO 13504577 ENCODE Processing Pipeline b55970716a094c8dea68497c27c00bcb https://www.encodeproject.org/files/ENCFF675XWT/@@download/ENCFF675XWT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF983DFB fastq reads ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 968715302 Xiang-Dong Fu, UCSD 4bc0dd942a221a91ce4c651e8b035121 SRA:SRR6213251 https://www.encodeproject.org/files/ENCFF983DFB/@@download/ENCFF983DFB.fastq.gz Illumina HiSeq 2000 /files/ENCFF510UAH/ released low read length, mild to moderate bottlenecking, low read depth ENCFF590TBW fastq reads ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 1010271744 Xiang-Dong Fu, UCSD c6f54a81cefc5c980681ba06a8970a7f SRA:SRR6213250 https://www.encodeproject.org/files/ENCFF590TBW/@@download/ENCFF590TBW.fastq.gz Illumina HiSeq 2000 /files/ENCFF092DDZ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF258RWG bam unfiltered alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF983DFB 1053665432 ENCODE Processing Pipeline 8fd3f4c5296245decc01af15f4ae001a https://www.encodeproject.org/files/ENCFF258RWG/@@download/ENCFF258RWG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF468LRV bam unfiltered alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF983DFB 1053848654 ENCODE Processing Pipeline 5f686262ca2ee205acb3b740d49581e5 https://www.encodeproject.org/files/ENCFF468LRV/@@download/ENCFF468LRV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF216EBS bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF983DFB 400538142 ENCODE Processing Pipeline 2293c54b3d0e35f1ce374b1d6663e4d8 https://www.encodeproject.org/files/ENCFF216EBS/@@download/ENCFF216EBS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF232QFN bam unfiltered alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF590TBW, ENCFF643CGH 1094078463 ENCODE Processing Pipeline 02e3a63d9e2412041eb1a5d9db62af01 https://www.encodeproject.org/files/ENCFF232QFN/@@download/ENCFF232QFN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF682NGE bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF590TBW, ENCFF643CGH 410380335 ENCODE Processing Pipeline b7b209cf556b8ca51a71887dd0f337fc https://www.encodeproject.org/files/ENCFF682NGE/@@download/ENCFF682NGE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF328UKA bam unfiltered alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF590TBW, ENCFF807MUK 1093915600 ENCODE Processing Pipeline 94d53d516a154ad4fec07ea76a19d1f3 https://www.encodeproject.org/files/ENCFF328UKA/@@download/ENCFF328UKA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF165COO bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF590TBW, ENCFF807MUK 410975526 ENCODE Processing Pipeline 601572b8fae36b61c40322024b6dd204 https://www.encodeproject.org/files/ENCFF165COO/@@download/ENCFF165COO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF466OLG bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF983DFB 399946847 ENCODE Processing Pipeline 3fbe9a9fd1bfea580172c23ed834d21f https://www.encodeproject.org/files/ENCFF466OLG/@@download/ENCFF466OLG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF595HIY bigBed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF368IHM 12908261 ENCODE Processing Pipeline c40ecd0d62a81fd54042209500eb0d75 https://www.encodeproject.org/files/ENCFF595HIY/@@download/ENCFF595HIY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF494CKB bigWig fold change over control ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF216EBS, ENCFF508DBG 299724729 ENCODE Processing Pipeline 0ebd817d8bc00485ad2711ea3604440a https://www.encodeproject.org/files/ENCFF494CKB/@@download/ENCFF494CKB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF308BXW bigWig fold change over control ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF165COO, ENCFF572OMD 294257260 ENCODE Processing Pipeline d13ccbc00baf1abfda5df79b0abfd988 https://www.encodeproject.org/files/ENCFF308BXW/@@download/ENCFF308BXW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF368IHM bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF216EBS, ENCFF508DBG 5654023 ENCODE Processing Pipeline 41b2340859901069610fca97bbe1ca32 https://www.encodeproject.org/files/ENCFF368IHM/@@download/ENCFF368IHM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF443QPE bigWig signal p-value ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF216EBS, ENCFF508DBG 543076856 ENCODE Processing Pipeline 120f8084897f3a6c77179f5a28cf189b https://www.encodeproject.org/files/ENCFF443QPE/@@download/ENCFF443QPE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF799NWP bigWig signal p-value ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF165COO, ENCFF216EBS, ENCFF508DBG, ENCFF572OMD 928842385 ENCODE Processing Pipeline c59fb6ec97c467ad29c61de9ad65cd27 https://www.encodeproject.org/files/ENCFF799NWP/@@download/ENCFF799NWP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF899AVP bigWig signal p-value ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF165COO, ENCFF572OMD 468143835 ENCODE Processing Pipeline 8f4c1663b0ab1163b73a35e6f66cc3bf https://www.encodeproject.org/files/ENCFF899AVP/@@download/ENCFF899AVP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF794XXK bigWig fold change over control ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF165COO, ENCFF216EBS, ENCFF508DBG, ENCFF572OMD 684441418 ENCODE Processing Pipeline f000f292dbe3c86a3bb6977951e11c9a https://www.encodeproject.org/files/ENCFF794XXK/@@download/ENCFF794XXK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF059VEO bed narrowPeak conservative idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF368IHM, ENCFF700XRO, ENCFF958WJN 141741 ENCODE Processing Pipeline 4211bacd3e15f45c368f7cc3af15837e https://www.encodeproject.org/files/ENCFF059VEO/@@download/ENCFF059VEO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF700XRO bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF165COO, ENCFF216EBS, ENCFF508DBG, ENCFF572OMD 6822248 ENCODE Processing Pipeline c5f08ba342a082ecae3186d5cf41e737 https://www.encodeproject.org/files/ENCFF700XRO/@@download/ENCFF700XRO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF967VHN bigBed narrowPeak conservative idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF059VEO 299488 ENCODE Processing Pipeline ba913d7dc5c1df050145f491898b7ce5 https://www.encodeproject.org/files/ENCFF967VHN/@@download/ENCFF967VHN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF958WJN bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF165COO, ENCFF572OMD 5481752 ENCODE Processing Pipeline 5e55b4a47a1adfdffea227c9ea0cf556 https://www.encodeproject.org/files/ENCFF958WJN/@@download/ENCFF958WJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF853JGP bigBed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF958WJN 12883771 ENCODE Processing Pipeline fb20fd6897a8bfb717596d6a1e120964 https://www.encodeproject.org/files/ENCFF853JGP/@@download/ENCFF853JGP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF003EQP bigBed narrowPeak optimal idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF905VXX 308755 ENCODE Processing Pipeline cf73ecd4f05cf7789286e9182db856bc https://www.encodeproject.org/files/ENCFF003EQP/@@download/ENCFF003EQP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF919ERM bigBed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF700XRO 12942402 ENCODE Processing Pipeline 7cf49de3bf1a2814670e2592db96c4bf https://www.encodeproject.org/files/ENCFF919ERM/@@download/ENCFF919ERM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF905VXX bed narrowPeak optimal idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF368IHM, ENCFF700XRO, ENCFF958WJN 148569 ENCODE Processing Pipeline dc9b0aa9306a30f02136fb2eb7c10c72 https://www.encodeproject.org/files/ENCFF905VXX/@@download/ENCFF905VXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF101NHJ bigWig signal p-value ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF466OLG, ENCFF721LZU 552446745 ENCODE Processing Pipeline cfcd4e9454fe073eb27351a84316a41a https://www.encodeproject.org/files/ENCFF101NHJ/@@download/ENCFF101NHJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF588VYL bigWig signal p-value ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF682NGE 488234461 ENCODE Processing Pipeline 5622fa7300db4ee1ecf3ad80c2e77dc1 https://www.encodeproject.org/files/ENCFF588VYL/@@download/ENCFF588VYL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF334YSY bigWig fold change over control ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF682NGE 292487904 ENCODE Processing Pipeline 826df4ec06fd3c63b214e696cf73952a https://www.encodeproject.org/files/ENCFF334YSY/@@download/ENCFF334YSY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF299MKR bigWig signal p-value ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF466OLG, ENCFF682NGE, ENCFF721LZU 843674433 ENCODE Processing Pipeline 9035726618da988e5484ac6ff1db1f3a https://www.encodeproject.org/files/ENCFF299MKR/@@download/ENCFF299MKR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF674XPK bigWig fold change over control ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF466OLG, ENCFF721LZU 311341606 ENCODE Processing Pipeline 2f89dcc3502b6bfb15a4c45c08d20d59 https://www.encodeproject.org/files/ENCFF674XPK/@@download/ENCFF674XPK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF546RAG bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF466OLG, ENCFF721LZU 5702685 ENCODE Processing Pipeline a00cdc891e4073c25f59d8235f94a5a2 https://www.encodeproject.org/files/ENCFF546RAG/@@download/ENCFF546RAG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF295PNX bigBed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF285OCH 13005781 ENCODE Processing Pipeline 7dcfb865c70074bef6538d6f1b2b14ec https://www.encodeproject.org/files/ENCFF295PNX/@@download/ENCFF295PNX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF134EIU bigWig fold change over control ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF466OLG, ENCFF682NGE, ENCFF721LZU 700805856 ENCODE Processing Pipeline 289805cf6e3c4e34382e2c67a025efe1 https://www.encodeproject.org/files/ENCFF134EIU/@@download/ENCFF134EIU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF285OCH bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100PTE, ENCFF466OLG, ENCFF682NGE, ENCFF721LZU 6840429 ENCODE Processing Pipeline 138bb6cb988ccd7302fed63cf0d33986 https://www.encodeproject.org/files/ENCFF285OCH/@@download/ENCFF285OCH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF632WCQ bigBed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF546RAG 12961055 ENCODE Processing Pipeline 1f7a33e44af81af1c229ad8b3ce8497a https://www.encodeproject.org/files/ENCFF632WCQ/@@download/ENCFF632WCQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF862VLY bigBed narrowPeak conservative idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF282WIP 378506 ENCODE Processing Pipeline b65cbfcfedd69ab6924586d49e7f9411 https://www.encodeproject.org/files/ENCFF862VLY/@@download/ENCFF862VLY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF809AYK bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100PTE, ENCFF682NGE 5217721 ENCODE Processing Pipeline f566fb5c685dba707c8e6f0dfa094156 https://www.encodeproject.org/files/ENCFF809AYK/@@download/ENCFF809AYK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF269GTJ bigBed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF809AYK 12796807 ENCODE Processing Pipeline f266cbe4fe567acd4be3edaca8a216b3 https://www.encodeproject.org/files/ENCFF269GTJ/@@download/ENCFF269GTJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF282WIP bed narrowPeak conservative idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF285OCH, ENCFF419RSJ, ENCFF546RAG, ENCFF809AYK 152334 ENCODE Processing Pipeline 30c8ecb8f373ec17be7c6331bfd34edc https://www.encodeproject.org/files/ENCFF282WIP/@@download/ENCFF282WIP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF448YOS bed narrowPeak optimal idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF285OCH, ENCFF419RSJ, ENCFF546RAG, ENCFF809AYK 161538 ENCODE Processing Pipeline c29e833c1cf56dbb7b813161c87dbcd6 https://www.encodeproject.org/files/ENCFF448YOS/@@download/ENCFF448YOS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF021QCU bigBed narrowPeak optimal idr thresholded peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF448YOS 392938 ENCODE Processing Pipeline 122f102a4866736dd810ddda9b2bb74e https://www.encodeproject.org/files/ENCFF021QCU/@@download/ENCFF021QCU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF356VYM fastq reads ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 2 ENCFF282GIL 3047713005 Michael Snyder, Stanford 77311060c1079b5c17d5869db84e4dc0 SRA:SRR6212684 https://www.encodeproject.org/files/ENCFF356VYM/@@download/ENCFF356VYM.fastq.gz Illumina HiSeq 2000 /files/ENCFF368UOC/ released borderline replicate concordance, low read depth ENCFF608JOK fastq reads ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 2 ENCFF025MOI 2111287594 Michael Snyder, Stanford eb7d2bf38bf1037f8c67ed56d4d4327e SRA:SRR6212683 https://www.encodeproject.org/files/ENCFF608JOK/@@download/ENCFF608JOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF608MDV/ released borderline replicate concordance, low read depth ENCFF282GIL fastq reads ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 1 100 paired-ended 1 ENCFF356VYM 3018520360 Michael Snyder, Stanford 28863095fbd1efd26a709d540470deb8 SRA:SRR6212684 https://www.encodeproject.org/files/ENCFF282GIL/@@download/ENCFF282GIL.fastq.gz Illumina HiSeq 2000 /files/ENCFF410PHD/ released borderline replicate concordance, low read depth ENCFF025MOI fastq reads ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 1 100 paired-ended 1 ENCFF608JOK 2084823258 Michael Snyder, Stanford 4f1e1ac3a8eddf29b9a68d379d2c5eef SRA:SRR6212683 https://www.encodeproject.org/files/ENCFF025MOI/@@download/ENCFF025MOI.fastq.gz Illumina HiSeq 2000 /files/ENCFF240DTE/ released borderline replicate concordance, low read depth ENCFF647GNO bam unfiltered alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF025MOI, ENCFF608JOK, ENCFF807MUK 4615497408 ENCODE Processing Pipeline 7cb9e9451fe97ef7ec2f2ed790875dc1 https://www.encodeproject.org/files/ENCFF647GNO/@@download/ENCFF647GNO.bam hg19 released borderline replicate concordance, low read depth ENCFF828EAF bam unfiltered alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF025MOI, ENCFF608JOK, ENCFF643CGH 4623678073 ENCODE Processing Pipeline 68c8e7d991d8108bf1b678db32b14c04 https://www.encodeproject.org/files/ENCFF828EAF/@@download/ENCFF828EAF.bam GRCh38 released borderline replicate concordance, low read depth ENCFF815FDI bam unfiltered alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF282GIL, ENCFF356VYM, ENCFF643CGH 6500880676 ENCODE Processing Pipeline 8fb1681cda05023dd08939b1c7ae65f5 https://www.encodeproject.org/files/ENCFF815FDI/@@download/ENCFF815FDI.bam GRCh38 released borderline replicate concordance, low read depth ENCFF565AAY bam unfiltered alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF282GIL, ENCFF356VYM, ENCFF807MUK 6492097731 ENCODE Processing Pipeline fff66a59fd3f7766d6559c4675f042e2 https://www.encodeproject.org/files/ENCFF565AAY/@@download/ENCFF565AAY.bam hg19 released borderline replicate concordance, low read depth ENCFF118SOA bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF025MOI, ENCFF608JOK, ENCFF643CGH 3748417070 ENCODE Processing Pipeline c49f757feeaa17d7eb54b95ec556fb3e https://www.encodeproject.org/files/ENCFF118SOA/@@download/ENCFF118SOA.bam GRCh38 released borderline replicate concordance, low read depth ENCFF376ISC bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF025MOI, ENCFF608JOK, ENCFF807MUK 3752858471 ENCODE Processing Pipeline 7b138886894ac422a02e509ae549d3ab https://www.encodeproject.org/files/ENCFF376ISC/@@download/ENCFF376ISC.bam hg19 released borderline replicate concordance, low read depth ENCFF359CBG bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF282GIL, ENCFF356VYM, ENCFF807MUK 5348158669 ENCODE Processing Pipeline 1a6b3999a0be816e6508c4cd370d0497 https://www.encodeproject.org/files/ENCFF359CBG/@@download/ENCFF359CBG.bam hg19 released borderline replicate concordance, low read depth ENCFF357AUM bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF282GIL, ENCFF356VYM, ENCFF643CGH 5346136014 ENCODE Processing Pipeline b9b12a3c0c6bf55d78e81ca120decb25 https://www.encodeproject.org/files/ENCFF357AUM/@@download/ENCFF357AUM.bam GRCh38 released borderline replicate concordance, low read depth ENCFF224PYH bigWig fold change over control ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF359CBG, ENCFF376ISC, ENCFF506DFV 1890073821 ENCODE Processing Pipeline f4f29048cd4ef543ab460148bc48bfa3 https://www.encodeproject.org/files/ENCFF224PYH/@@download/ENCFF224PYH.bigWig hg19 released borderline replicate concordance, low read depth ENCFF776LQY bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF359CBG, ENCFF506DFV 6394384 ENCODE Processing Pipeline b4546201bfab9d5668f1ae28cd6976eb https://www.encodeproject.org/files/ENCFF776LQY/@@download/ENCFF776LQY.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF755RLA bigBed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF776LQY 11290651 ENCODE Processing Pipeline d64277f259c8fbd7d712873fcc29d5f2 https://www.encodeproject.org/files/ENCFF755RLA/@@download/ENCFF755RLA.bigBed hg19 released borderline replicate concordance, low read depth ENCFF691UGL bigBed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF700GJA 11292375 ENCODE Processing Pipeline 776b5dbd2fdcd2008f6697942e75be6f https://www.encodeproject.org/files/ENCFF691UGL/@@download/ENCFF691UGL.bigBed hg19 released borderline replicate concordance, low read depth ENCFF110IXX bigBed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF452MJW 11210798 ENCODE Processing Pipeline 286b2755cdc959d4d5090763b5fd1e8e https://www.encodeproject.org/files/ENCFF110IXX/@@download/ENCFF110IXX.bigBed hg19 released borderline replicate concordance, low read depth ENCFF920GJD bigWig fold change over control ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF359CBG, ENCFF506DFV 1476624387 ENCODE Processing Pipeline c423283d40537cebf57d743f8c84f9d0 https://www.encodeproject.org/files/ENCFF920GJD/@@download/ENCFF920GJD.bigWig hg19 released borderline replicate concordance, low read depth ENCFF485QME bigWig signal p-value ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF376ISC, ENCFF506DFV 1069593313 ENCODE Processing Pipeline 29202c369d08cde5ddfa9a133b714872 https://www.encodeproject.org/files/ENCFF485QME/@@download/ENCFF485QME.bigWig hg19 released borderline replicate concordance, low read depth ENCFF468CTD bigWig signal p-value ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF359CBG, ENCFF376ISC, ENCFF506DFV 1418989245 ENCODE Processing Pipeline 642a17b36082226b474c53f6f6269274 https://www.encodeproject.org/files/ENCFF468CTD/@@download/ENCFF468CTD.bigWig hg19 released borderline replicate concordance, low read depth ENCFF267NEQ bigWig fold change over control ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF376ISC, ENCFF506DFV 1199376719 ENCODE Processing Pipeline c94f2894ae6dd49e21b3427278bc5660 https://www.encodeproject.org/files/ENCFF267NEQ/@@download/ENCFF267NEQ.bigWig hg19 released borderline replicate concordance, low read depth ENCFF898ZKM bigBed narrowPeak optimal idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF134CUM 342860 ENCODE Processing Pipeline 789895c5dafdb48d9850c6254304b8e0 https://www.encodeproject.org/files/ENCFF898ZKM/@@download/ENCFF898ZKM.bigBed hg19 released borderline replicate concordance, low read depth ENCFF700GJA bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF376ISC, ENCFF506DFV 6027086 ENCODE Processing Pipeline 60055a48f7ef98a96310305a307328a8 https://www.encodeproject.org/files/ENCFF700GJA/@@download/ENCFF700GJA.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF452MJW bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF359CBG, ENCFF376ISC, ENCFF506DFV 7115881 ENCODE Processing Pipeline f2569e17f766a5f544af46b5541d9070 https://www.encodeproject.org/files/ENCFF452MJW/@@download/ENCFF452MJW.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF894CCA bed narrowPeak conservative idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF452MJW, ENCFF700GJA, ENCFF776LQY 88402 ENCODE Processing Pipeline 44d8418e275e40560e9c250960008d40 https://www.encodeproject.org/files/ENCFF894CCA/@@download/ENCFF894CCA.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF484KHM bigBed narrowPeak conservative idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF894CCA 223408 ENCODE Processing Pipeline 758bf2a4a1cb14042da5a2515a884324 https://www.encodeproject.org/files/ENCFF484KHM/@@download/ENCFF484KHM.bigBed hg19 released borderline replicate concordance, low read depth ENCFF460YMQ bigWig signal p-value ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF359CBG, ENCFF506DFV 1496461374 ENCODE Processing Pipeline 10fc50fec7e066190b5e9eea5c8e5388 https://www.encodeproject.org/files/ENCFF460YMQ/@@download/ENCFF460YMQ.bigWig hg19 released borderline replicate concordance, low read depth ENCFF134CUM bed narrowPeak optimal idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF001TDO, ENCFF452MJW, ENCFF700GJA, ENCFF776LQY 168516 ENCODE Processing Pipeline b52e0fd32c00468eb65ad29e0e7bf9b6 https://www.encodeproject.org/files/ENCFF134CUM/@@download/ENCFF134CUM.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF205NGG bigWig signal p-value ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF357AUM, ENCFF720AUK, ENCFF796JTX 1502131627 ENCODE Processing Pipeline 92a8abf76a00c4fc6b27d9718c476f6e https://www.encodeproject.org/files/ENCFF205NGG/@@download/ENCFF205NGG.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF415VQG bigWig fold change over control ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF357AUM, ENCFF720AUK, ENCFF796JTX 1475852732 ENCODE Processing Pipeline e0aa634252d314c23c25a3621a47541a https://www.encodeproject.org/files/ENCFF415VQG/@@download/ENCFF415VQG.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF813NNS bigBed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF752LGN 11311591 ENCODE Processing Pipeline 2c0ce2026d544c755b86689b6bda7dd9 https://www.encodeproject.org/files/ENCFF813NNS/@@download/ENCFF813NNS.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF312VYQ bigBed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF105HDV 11314754 ENCODE Processing Pipeline 058873e703974e46cd7fd88cbed7915d https://www.encodeproject.org/files/ENCFF312VYQ/@@download/ENCFF312VYQ.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF657UVA bed narrowPeak optimal idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF105HDV, ENCFF419RSJ, ENCFF449ZGH, ENCFF752LGN 173527 ENCODE Processing Pipeline 3f01baa89ba091ecc16de02e36e27eb7 https://www.encodeproject.org/files/ENCFF657UVA/@@download/ENCFF657UVA.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF944DOR bigWig signal p-value ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF118SOA, ENCFF720AUK, ENCFF796JTX 1188372429 ENCODE Processing Pipeline 28bead8d276000ddaca562f61d9d5d4b https://www.encodeproject.org/files/ENCFF944DOR/@@download/ENCFF944DOR.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF200ADG bigWig signal p-value ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF118SOA, ENCFF357AUM, ENCFF720AUK, ENCFF796JTX 1695826377 ENCODE Processing Pipeline f715cf3c64554d86c53b6b874096e5fa https://www.encodeproject.org/files/ENCFF200ADG/@@download/ENCFF200ADG.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF711YOH bigWig fold change over control ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF118SOA, ENCFF720AUK, ENCFF796JTX 1199807900 ENCODE Processing Pipeline d8d59dc6f288d44e8fcf20468ac3b0d2 https://www.encodeproject.org/files/ENCFF711YOH/@@download/ENCFF711YOH.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF752LGN bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF357AUM, ENCFF720AUK, ENCFF796JTX 6395742 ENCODE Processing Pipeline 51ce9167efdeec46dbd17ba6aa8ddd99 https://www.encodeproject.org/files/ENCFF752LGN/@@download/ENCFF752LGN.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF745LZA bigBed narrowPeak optimal idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF657UVA 352145 ENCODE Processing Pipeline 0ac4dc9ba3d91867cab232766c800be3 https://www.encodeproject.org/files/ENCFF745LZA/@@download/ENCFF745LZA.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF530LGP bigWig fold change over control ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF118SOA, ENCFF357AUM, ENCFF720AUK, ENCFF796JTX 1912305724 ENCODE Processing Pipeline b5576a515624ba5fcca851811fe6d7a1 https://www.encodeproject.org/files/ENCFF530LGP/@@download/ENCFF530LGP.bigWig GRCh38 released borderline replicate concordance, low read depth ENCFF449ZGH bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF118SOA, ENCFF357AUM, ENCFF720AUK, ENCFF796JTX 7123226 ENCODE Processing Pipeline 5262583013b92fb96ccc6dd235ba1c79 https://www.encodeproject.org/files/ENCFF449ZGH/@@download/ENCFF449ZGH.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF836PQF bigBed narrowPeak conservative idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF552BXT 227204 ENCODE Processing Pipeline 991a24ca75e8687d6c72a696cf985775 https://www.encodeproject.org/files/ENCFF836PQF/@@download/ENCFF836PQF.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF105HDV bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF118SOA, ENCFF720AUK, ENCFF796JTX 6027540 ENCODE Processing Pipeline 203a769ce8e208987e231c59f399ef12 https://www.encodeproject.org/files/ENCFF105HDV/@@download/ENCFF105HDV.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF552BXT bed narrowPeak conservative idr thresholded peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF105HDV, ENCFF419RSJ, ENCFF449ZGH, ENCFF752LGN 89575 ENCODE Processing Pipeline f3e0cb76310aa8f95c8e906490a41b62 https://www.encodeproject.org/files/ENCFF552BXT/@@download/ENCFF552BXT.bed.gz GRCh38 released borderline replicate concordance, low read depth ENCFF379WBE bigBed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1, 2 ENCFF449ZGH 11229744 ENCODE Processing Pipeline dcf62fc95018650af9b4799051164fb9 https://www.encodeproject.org/files/ENCFF379WBE/@@download/ENCFF379WBE.bigBed GRCh38 released borderline replicate concordance, low read depth ENCFF650USF fastq reads ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1152033333 Bradley Bernstein, Broad 10a795497e8ab94b70cb46a281a786a9 https://www.encodeproject.org/files/ENCFF650USF/@@download/ENCFF650USF.fastq.gz Illumina HiSeq 2500 /files/ENCFF053BKB/, /files/ENCFF361CSC/, /files/ENCFF378JTU/, /files/ENCFF825KUP/ released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF837BCE fastq reads ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1121490952 Bradley Bernstein, Broad 9c87d1f2ad6f8b9ebb95ef29e39c2344 https://www.encodeproject.org/files/ENCFF837BCE/@@download/ENCFF837BCE.fastq.gz Illumina HiSeq 2500 /files/ENCFF053BKB/, /files/ENCFF361CSC/, /files/ENCFF378JTU/, /files/ENCFF825KUP/ released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF659FZH bam unfiltered alignments ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF650USF, ENCFF807MUK, ENCFF837BCE 2153354383 ENCODE Processing Pipeline fb20af6f1cd8ab50f099d935b536f497 https://www.encodeproject.org/files/ENCFF659FZH/@@download/ENCFF659FZH.bam hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF569FWG bam unfiltered alignments ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF643CGH, ENCFF650USF, ENCFF837BCE 2157826020 ENCODE Processing Pipeline dada653de63a3db3c326cd14495ecd19 https://www.encodeproject.org/files/ENCFF569FWG/@@download/ENCFF569FWG.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF658UTU bam alignments ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF650USF, ENCFF807MUK, ENCFF837BCE 1770871078 ENCODE Processing Pipeline e7f92d6cbce3e6f59e8f5e121c640602 https://www.encodeproject.org/files/ENCFF658UTU/@@download/ENCFF658UTU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF996SQS bam alignments ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF643CGH, ENCFF650USF, ENCFF837BCE 1772632481 ENCODE Processing Pipeline 87a42b6ff685434c318f0015f6cdbafb https://www.encodeproject.org/files/ENCFF996SQS/@@download/ENCFF996SQS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF719EWH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF559LUB 564272 ENCODE Processing Pipeline bae201eac68a35464edbdcff8c56a1ce https://www.encodeproject.org/files/ENCFF719EWH/@@download/ENCFF719EWH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF302QQX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF419RSJ, ENCFF654IUM 556588 ENCODE Processing Pipeline f72f8152431cc7ad83b3aede0ed94396 https://www.encodeproject.org/files/ENCFF302QQX/@@download/ENCFF302QQX.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF720TNN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF302QQX 1188436 ENCODE Processing Pipeline 42488c2b7f02a325db1ea69c915ae290 https://www.encodeproject.org/files/ENCFF720TNN/@@download/ENCFF720TNN.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF555YOA bigWig signal p-value ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF665FWN, ENCFF996SQS 935598732 ENCODE Processing Pipeline c28b1c5b2be3a69d0c1010b72a753a4d https://www.encodeproject.org/files/ENCFF555YOA/@@download/ENCFF555YOA.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF181CLO bigWig fold change over control ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF658UTU, ENCFF788LJE 951002976 ENCODE Processing Pipeline 8ee614ea0f80798addec84a6e78066f0 https://www.encodeproject.org/files/ENCFF181CLO/@@download/ENCFF181CLO.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF251REO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF719EWH 1199155 ENCODE Processing Pipeline ea5251bbe319e8b4bcb945c0fd948664 https://www.encodeproject.org/files/ENCFF251REO/@@download/ENCFF251REO.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF120ABC bigWig signal p-value ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF658UTU, ENCFF788LJE 980311067 ENCODE Processing Pipeline 3d203e06973f49f9541d2ab1af5dec59 https://www.encodeproject.org/files/ENCFF120ABC/@@download/ENCFF120ABC.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF559LUB bed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF658UTU, ENCFF788LJE 6209258 ENCODE Processing Pipeline 238f11d7842436e967073bd16144a892 https://www.encodeproject.org/files/ENCFF559LUB/@@download/ENCFF559LUB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF527DIX bigBed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF559LUB 13576599 ENCODE Processing Pipeline 925020a6375bbe72692f892341130b7e https://www.encodeproject.org/files/ENCFF527DIX/@@download/ENCFF527DIX.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF975VDL bigWig fold change over control ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF665FWN, ENCFF996SQS 950169950 ENCODE Processing Pipeline 30b98f38ac8a9201db7c35543690ad75 https://www.encodeproject.org/files/ENCFF975VDL/@@download/ENCFF975VDL.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF782TEY bigBed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF654IUM 13589067 ENCODE Processing Pipeline fa1848c0b0c226a14b97baf9844c2ab4 https://www.encodeproject.org/files/ENCFF782TEY/@@download/ENCFF782TEY.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF654IUM bed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF665FWN, ENCFF996SQS 6207861 ENCODE Processing Pipeline 8da2c9ab108705d7d53d3c3c71681cfc https://www.encodeproject.org/files/ENCFF654IUM/@@download/ENCFF654IUM.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF363IHB bam unfiltered alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158WAX, ENCFF280MUX, ENCFF807MUK 7060969035 ENCODE Processing Pipeline 6f5e31bc4435f02be449258fda37b6c3 https://www.encodeproject.org/files/ENCFF363IHB/@@download/ENCFF363IHB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF216IMH bam unfiltered alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF274BMI, ENCFF692YLS, ENCFF807MUK 7551155234 ENCODE Processing Pipeline 224ccbb8dddb9e60fbd6a6d2dcbf5b9f https://www.encodeproject.org/files/ENCFF216IMH/@@download/ENCFF216IMH.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF158WAX fastq reads ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF280MUX 3183427570 Michael Snyder, Stanford 1a6fda24086d595dee4a17ece5448349 https://www.encodeproject.org/files/ENCFF158WAX/@@download/ENCFF158WAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released experiment not submitted to GEO partially characterized antibody ENCFF280MUX fastq reads ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF158WAX 3321349107 Michael Snyder, Stanford e176096c0fe03bd9cd3457b24cf949f9 https://www.encodeproject.org/files/ENCFF280MUX/@@download/ENCFF280MUX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released experiment not submitted to GEO partially characterized antibody ENCFF692YLS fastq reads ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF274BMI 3407542048 Michael Snyder, Stanford b9cfbd69e268b95fa3e00442719357d4 https://www.encodeproject.org/files/ENCFF692YLS/@@download/ENCFF692YLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released experiment not submitted to GEO partially characterized antibody ENCFF274BMI fastq reads ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF692YLS 3566611864 Michael Snyder, Stanford d0fe7114141c70d9bc6c1abc474d12ad https://www.encodeproject.org/files/ENCFF274BMI/@@download/ENCFF274BMI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released experiment not submitted to GEO partially characterized antibody ENCFF463TFB bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158WAX, ENCFF280MUX, ENCFF807MUK 5866524695 ENCODE Processing Pipeline 8462bfd8661da836ef80dbb493333ace https://www.encodeproject.org/files/ENCFF463TFB/@@download/ENCFF463TFB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF377LXP bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF274BMI, ENCFF692YLS, ENCFF807MUK 6319015355 ENCODE Processing Pipeline 0b57acabd7d0697c97d025244cb55906 https://www.encodeproject.org/files/ENCFF377LXP/@@download/ENCFF377LXP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF683WDG bigWig signal p-value ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF463TFB, ENCFF581ZJL 1222039125 ENCODE Processing Pipeline e6333ebd40ca2b64d6180e00ec767afb https://www.encodeproject.org/files/ENCFF683WDG/@@download/ENCFF683WDG.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF785JGY bigWig signal p-value ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF377LXP, ENCFF581ZJL 1165673527 ENCODE Processing Pipeline 20d625f19fe4fbf7d86a8bf641d4da0c https://www.encodeproject.org/files/ENCFF785JGY/@@download/ENCFF785JGY.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF899APE bigWig signal p-value ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF377LXP, ENCFF463TFB, ENCFF581ZJL 1590299393 ENCODE Processing Pipeline fde0067874e44bf59823cb667ca2d253 https://www.encodeproject.org/files/ENCFF899APE/@@download/ENCFF899APE.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF362VIP bigWig fold change over control ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF463TFB, ENCFF581ZJL 1417910045 ENCODE Processing Pipeline 9bd8ebe39a45ba3aa13ec9951c7e4df0 https://www.encodeproject.org/files/ENCFF362VIP/@@download/ENCFF362VIP.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF736ESB bigWig fold change over control ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF377LXP, ENCFF581ZJL 1485588802 ENCODE Processing Pipeline 2f9a70cdfd57c0bb8d0e72e4821af8e3 https://www.encodeproject.org/files/ENCFF736ESB/@@download/ENCFF736ESB.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF498CGA bigWig fold change over control ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF377LXP, ENCFF463TFB, ENCFF581ZJL 2083849376 ENCODE Processing Pipeline fd4f5d488788692a4b87ab1ac9490699 https://www.encodeproject.org/files/ENCFF498CGA/@@download/ENCFF498CGA.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF612RKY bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF463TFB, ENCFF581ZJL 6725703 ENCODE Processing Pipeline db56a1b97b1aaba7d7eb2ed370b55e66 https://www.encodeproject.org/files/ENCFF612RKY/@@download/ENCFF612RKY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF322PWJ bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF377LXP, ENCFF581ZJL 6801753 ENCODE Processing Pipeline 2420fa96d885bfe037e9400bacf6af0d https://www.encodeproject.org/files/ENCFF322PWJ/@@download/ENCFF322PWJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF556DPZ bigBed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF612RKY 11065467 ENCODE Processing Pipeline 5bd64ae9446bb7476ab14a870112504a https://www.encodeproject.org/files/ENCFF556DPZ/@@download/ENCFF556DPZ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF834QOU bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF377LXP, ENCFF463TFB, ENCFF581ZJL 7178986 ENCODE Processing Pipeline 96d447e85b4ef8c371e1393c1fa6854d https://www.encodeproject.org/files/ENCFF834QOU/@@download/ENCFF834QOU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF195UTQ bigBed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF322PWJ 10991000 ENCODE Processing Pipeline b48ab7c3d302270b260e5ebf7f284e89 https://www.encodeproject.org/files/ENCFF195UTQ/@@download/ENCFF195UTQ.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF370NUY bigBed narrowPeak conservative idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF752JAM 163173 ENCODE Processing Pipeline 73272159341c34c86fbed7c438af256a https://www.encodeproject.org/files/ENCFF370NUY/@@download/ENCFF370NUY.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF717HOX bigBed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF834QOU 10912787 ENCODE Processing Pipeline 68771aa12bc9e88177270a24f1b4ea94 https://www.encodeproject.org/files/ENCFF717HOX/@@download/ENCFF717HOX.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF752JAM bed narrowPeak conservative idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF322PWJ, ENCFF612RKY, ENCFF834QOU 59002 ENCODE Processing Pipeline b197727d7078588cc0f7bf634f26b8dc https://www.encodeproject.org/files/ENCFF752JAM/@@download/ENCFF752JAM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF226CZE bed narrowPeak optimal idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF322PWJ, ENCFF612RKY, ENCFF834QOU 88714 ENCODE Processing Pipeline 414496a7c317bfc3f9a776d9cde1d3d8 https://www.encodeproject.org/files/ENCFF226CZE/@@download/ENCFF226CZE.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF330RTU bigBed narrowPeak optimal idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF226CZE 211656 ENCODE Processing Pipeline 8ea7c45231fb4447d24a071cb9e0755f https://www.encodeproject.org/files/ENCFF330RTU/@@download/ENCFF330RTU.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF421TML bam unfiltered alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF274BMI, ENCFF643CGH, ENCFF692YLS 7561076430 ENCODE Processing Pipeline 4a9b8c98eebb74581ecbca6750498948 https://www.encodeproject.org/files/ENCFF421TML/@@download/ENCFF421TML.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF174PUZ bam unfiltered alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158WAX, ENCFF280MUX, ENCFF643CGH 7068910213 ENCODE Processing Pipeline b329bb89891af8efbe10f0cb832b61d2 https://www.encodeproject.org/files/ENCFF174PUZ/@@download/ENCFF174PUZ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF807MSB bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158WAX, ENCFF280MUX, ENCFF643CGH 5874490254 ENCODE Processing Pipeline 1cc75dab13ed0cf6ded3c78cd0475ae5 https://www.encodeproject.org/files/ENCFF807MSB/@@download/ENCFF807MSB.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF979DTV bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF274BMI, ENCFF643CGH, ENCFF692YLS 6328002171 ENCODE Processing Pipeline 317988f02bb4a143805e761ddc536e7d https://www.encodeproject.org/files/ENCFF979DTV/@@download/ENCFF979DTV.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF967BBZ bigWig signal p-value ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF807MSB, ENCFF910IKB 1490170625 ENCODE Processing Pipeline 5ad4aa246bcafa691a78eb0c9fa5f592 https://www.encodeproject.org/files/ENCFF967BBZ/@@download/ENCFF967BBZ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF083TUV bigWig signal p-value ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF910IKB, ENCFF979DTV 1436372212 ENCODE Processing Pipeline a0ca3a1f956087468036dfdb4252a094 https://www.encodeproject.org/files/ENCFF083TUV/@@download/ENCFF083TUV.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF062XGV bigWig signal p-value ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF807MSB, ENCFF910IKB, ENCFF979DTV 1531924271 ENCODE Processing Pipeline 446b2dc7d2f757191eb69e62781853a0 https://www.encodeproject.org/files/ENCFF062XGV/@@download/ENCFF062XGV.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF691XPP bigWig fold change over control ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF807MSB, ENCFF910IKB 1411019117 ENCODE Processing Pipeline 1d8045b3768d87c3907f92ac16b3f92f https://www.encodeproject.org/files/ENCFF691XPP/@@download/ENCFF691XPP.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF639IKU bigWig fold change over control ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF910IKB, ENCFF979DTV 1504307542 ENCODE Processing Pipeline e3319a717c7421dfd53c21f6c64cb970 https://www.encodeproject.org/files/ENCFF639IKU/@@download/ENCFF639IKU.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF588FOZ bigWig fold change over control ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF807MSB, ENCFF910IKB, ENCFF979DTV 2069420529 ENCODE Processing Pipeline e84a466c806a41f31bb6ead3a4c1751e https://www.encodeproject.org/files/ENCFF588FOZ/@@download/ENCFF588FOZ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF210QMU bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF910IKB, ENCFF979DTV 6691999 ENCODE Processing Pipeline 5fbd24a407134951a8f14858de24123b https://www.encodeproject.org/files/ENCFF210QMU/@@download/ENCFF210QMU.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF996OQL bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF807MSB, ENCFF910IKB, ENCFF979DTV 7168354 ENCODE Processing Pipeline 16862f76e8dff1b979ca951644a594e0 https://www.encodeproject.org/files/ENCFF996OQL/@@download/ENCFF996OQL.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF080FCQ bigBed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF210QMU 11013457 ENCODE Processing Pipeline 0f31d1bc104b10b462ccdd27ad9ee597 https://www.encodeproject.org/files/ENCFF080FCQ/@@download/ENCFF080FCQ.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF012HFO bigBed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF996OQL 10933553 ENCODE Processing Pipeline eec6c561d130b79c35833d6afa5c8891 https://www.encodeproject.org/files/ENCFF012HFO/@@download/ENCFF012HFO.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF461KDN bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF807MSB, ENCFF910IKB 6604673 ENCODE Processing Pipeline 64ac36cfc702913c619e638fc7715999 https://www.encodeproject.org/files/ENCFF461KDN/@@download/ENCFF461KDN.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF598XBF bigBed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF461KDN 11080880 ENCODE Processing Pipeline 95a12e6527ce020c8d10d96f01c23796 https://www.encodeproject.org/files/ENCFF598XBF/@@download/ENCFF598XBF.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF518FZC bigBed narrowPeak optimal idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF571REC 212513 ENCODE Processing Pipeline fb84bd4aab41fa4360c1597089199a6a https://www.encodeproject.org/files/ENCFF518FZC/@@download/ENCFF518FZC.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF843VNZ bed narrowPeak conservative idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF210QMU, ENCFF419RSJ, ENCFF461KDN, ENCFF996OQL 57701 ENCODE Processing Pipeline 19c3d3c499fd90a8fdd131f2fa81bf77 https://www.encodeproject.org/files/ENCFF843VNZ/@@download/ENCFF843VNZ.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF513VKI bigBed narrowPeak conservative idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF843VNZ 166126 ENCODE Processing Pipeline bf318c9263445ac82362a6f8ff98d2a2 https://www.encodeproject.org/files/ENCFF513VKI/@@download/ENCFF513VKI.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF571REC bed narrowPeak optimal idr thresholded peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF210QMU, ENCFF419RSJ, ENCFF461KDN, ENCFF996OQL 85800 ENCODE Processing Pipeline a7b1a93ff1be9fe1e4061bc81ca45305 https://www.encodeproject.org/files/ENCFF571REC/@@download/ENCFF571REC.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF588AQE fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 2 ENCFF542AWV 2351961594 Michael Snyder, Stanford 47b0206558f9d88ba552e285c181ce96 SRA:SRR6214309 https://www.encodeproject.org/files/ENCFF588AQE/@@download/ENCFF588AQE.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF216ZWY fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 1 ENCFF438VPJ 1964902618 Michael Snyder, Stanford f6c7fdcd37d877034a35b7744394c731 SRA:SRR6214308 https://www.encodeproject.org/files/ENCFF216ZWY/@@download/ENCFF216ZWY.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF542AWV fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 1 100 paired-ended 1 ENCFF588AQE 1985639513 Michael Snyder, Stanford 954d6fb62a901f0963c1902082ac64db SRA:SRR6214309 https://www.encodeproject.org/files/ENCFF542AWV/@@download/ENCFF542AWV.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF438VPJ fastq reads ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 1 100 paired-ended 2 ENCFF216ZWY 2324079540 Michael Snyder, Stanford 1ed255af01a0f20790814e6e72dab5de SRA:SRR6214308 https://www.encodeproject.org/files/ENCFF438VPJ/@@download/ENCFF438VPJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF686AFF bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF643CGH 3820685840 ENCODE Processing Pipeline 1c88aeaa663bf1e2bdf1677ade700458 https://www.encodeproject.org/files/ENCFF686AFF/@@download/ENCFF686AFF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF153LYV bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF643CGH 4077546105 ENCODE Processing Pipeline 814572c82959d7451bdd419ca2bc1a50 https://www.encodeproject.org/files/ENCFF153LYV/@@download/ENCFF153LYV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF002PPW bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF643CGH 2381016182 ENCODE Processing Pipeline 228971b7f0dcf333e82d3050197ccd1f https://www.encodeproject.org/files/ENCFF002PPW/@@download/ENCFF002PPW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF451KMO bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF643CGH 2787391511 ENCODE Processing Pipeline a1bfaf214828cd4a1011b9080d0c90e7 https://www.encodeproject.org/files/ENCFF451KMO/@@download/ENCFF451KMO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF273MCK bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF002PPW, ENCFF666ATR 800389487 ENCODE Processing Pipeline 4f865a92bf442b38a556b97444ce0484 https://www.encodeproject.org/files/ENCFF273MCK/@@download/ENCFF273MCK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF751APO bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF322NTO, ENCFF451KMO 972361295 ENCODE Processing Pipeline e881e7b81e8a7b3f4cc9a03c99d7f24f https://www.encodeproject.org/files/ENCFF751APO/@@download/ENCFF751APO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF839UEW bed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF322NTO, ENCFF451KMO 5929231 ENCODE Processing Pipeline 81d46325e1a0be54668d9cc630f540e9 https://www.encodeproject.org/files/ENCFF839UEW/@@download/ENCFF839UEW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF347XLQ bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF634YZT 13731882 ENCODE Processing Pipeline 630a8bf1d78c1a9a283b9edf0954c81b https://www.encodeproject.org/files/ENCFF347XLQ/@@download/ENCFF347XLQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF538RYD bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF002PPW, ENCFF322NTO, ENCFF451KMO, ENCFF666ATR 1521586237 ENCODE Processing Pipeline a6bc794ca15107e15001c7ac62b04b5d https://www.encodeproject.org/files/ENCFF538RYD/@@download/ENCFF538RYD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF331LPM bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF466FUD 13816105 ENCODE Processing Pipeline 33e6a2809b82199684d047d5f0828669 https://www.encodeproject.org/files/ENCFF331LPM/@@download/ENCFF331LPM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF244FHG bigBed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF770FCH 1349481 ENCODE Processing Pipeline a69d52f7d830b792f0d2be1b5bb6f7b2 https://www.encodeproject.org/files/ENCFF244FHG/@@download/ENCFF244FHG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF773EVD bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF322NTO, ENCFF451KMO 979946636 ENCODE Processing Pipeline 41ed12aee2281719f5435d61d5c0645a https://www.encodeproject.org/files/ENCFF773EVD/@@download/ENCFF773EVD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF106LWW bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF002PPW, ENCFF666ATR 866787884 ENCODE Processing Pipeline e4619c09b4fd9cccade92a6c5abc1fe9 https://www.encodeproject.org/files/ENCFF106LWW/@@download/ENCFF106LWW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF402ZMX bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF002PPW, ENCFF322NTO, ENCFF451KMO, ENCFF666ATR 1830736446 ENCODE Processing Pipeline 8009b8a4b8f56d302e9d03e61cc4c5e9 https://www.encodeproject.org/files/ENCFF402ZMX/@@download/ENCFF402ZMX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF634YZT bed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF002PPW, ENCFF666ATR 6504678 ENCODE Processing Pipeline 18d0df32eefb02231c2d59899caec56a https://www.encodeproject.org/files/ENCFF634YZT/@@download/ENCFF634YZT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF466FUD bed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF002PPW, ENCFF322NTO, ENCFF451KMO, ENCFF666ATR 7141253 ENCODE Processing Pipeline 73c49d48f4fab8652a85b60a499ea3ee https://www.encodeproject.org/files/ENCFF466FUD/@@download/ENCFF466FUD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF790HTS bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF839UEW 11478112 ENCODE Processing Pipeline c773c342a5e9fcb434d6bbe2bf8f941a https://www.encodeproject.org/files/ENCFF790HTS/@@download/ENCFF790HTS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF770FCH bed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF419RSJ, ENCFF466FUD, ENCFF634YZT, ENCFF839UEW 657397 ENCODE Processing Pipeline a71fd269e3ca6aa558d7d4236ba6ebcd https://www.encodeproject.org/files/ENCFF770FCH/@@download/ENCFF770FCH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF370ZNL bed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF419RSJ, ENCFF466FUD, ENCFF634YZT, ENCFF839UEW 943694 ENCODE Processing Pipeline aeeae2da172d9965f2d709f535a14528 https://www.encodeproject.org/files/ENCFF370ZNL/@@download/ENCFF370ZNL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF542RLE bigBed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF370ZNL 1786304 ENCODE Processing Pipeline cdb611c7f602d981e598bac3945c9609 https://www.encodeproject.org/files/ENCFF542RLE/@@download/ENCFF542RLE.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF510KSK bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF807MUK 4076308336 ENCODE Processing Pipeline 44668586b09a112fcdacb8f49a833b90 https://www.encodeproject.org/files/ENCFF510KSK/@@download/ENCFF510KSK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF779ZDD bam unfiltered alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF807MUK 3821927615 ENCODE Processing Pipeline 76686d9167160c527cd8148007bf20f8 https://www.encodeproject.org/files/ENCFF779ZDD/@@download/ENCFF779ZDD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF431VZN bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF807MUK 2377933318 ENCODE Processing Pipeline 0ff95db1abec2bfec31e52bbf3b1bf4c https://www.encodeproject.org/files/ENCFF431VZN/@@download/ENCFF431VZN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF720VMA bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF807MUK 2783670571 ENCODE Processing Pipeline 3b3e3ec67d9dc808dd26b1891a9b0c59 https://www.encodeproject.org/files/ENCFF720VMA/@@download/ENCFF720VMA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF356THD bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF431VZN, ENCFF901CND 939373770 ENCODE Processing Pipeline ce1f8977d5c25870bac648ef21b70a79 https://www.encodeproject.org/files/ENCFF356THD/@@download/ENCFF356THD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF229EBT bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF592WAL, ENCFF720VMA 1112750979 ENCODE Processing Pipeline e516312444d32001c92f8369f7a30430 https://www.encodeproject.org/files/ENCFF229EBT/@@download/ENCFF229EBT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF816QSI bigWig signal p-value ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF431VZN, ENCFF592WAL, ENCFF720VMA, ENCFF901CND 1770416245 ENCODE Processing Pipeline bf1aeaaa5dc743c80c1054b347665d81 https://www.encodeproject.org/files/ENCFF816QSI/@@download/ENCFF816QSI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF535MTO bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF431VZN, ENCFF901CND 806104873 ENCODE Processing Pipeline 3d4f0efa851f472f2201ac2e000257e0 https://www.encodeproject.org/files/ENCFF535MTO/@@download/ENCFF535MTO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF466WCO bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF592WAL, ENCFF720VMA 972185302 ENCODE Processing Pipeline 5e22353821d262756c89647dd60cc45a https://www.encodeproject.org/files/ENCFF466WCO/@@download/ENCFF466WCO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF522MRN bigWig fold change over control ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF431VZN, ENCFF592WAL, ENCFF720VMA, ENCFF901CND 1830224311 ENCODE Processing Pipeline 625d2f788fc02f30f2bb30c632847126 https://www.encodeproject.org/files/ENCFF522MRN/@@download/ENCFF522MRN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF468GKJ bed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF431VZN, ENCFF901CND 6353290 ENCODE Processing Pipeline 008b3f6fefad5f4a940bed4ce79e1877 https://www.encodeproject.org/files/ENCFF468GKJ/@@download/ENCFF468GKJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF884ZYH bed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF592WAL, ENCFF720VMA 5921939 ENCODE Processing Pipeline be6f2b6f5714f36b35311edc7ea25daf https://www.encodeproject.org/files/ENCFF884ZYH/@@download/ENCFF884ZYH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF172YHV bed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF431VZN, ENCFF592WAL, ENCFF720VMA, ENCFF901CND 7017369 ENCODE Processing Pipeline 986670d5355ffde4126c11d9c71a925f https://www.encodeproject.org/files/ENCFF172YHV/@@download/ENCFF172YHV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF811GIS bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 ENCFF468GKJ 13570418 ENCODE Processing Pipeline 69d54c9145f2c4b6d750115f6ca863ea https://www.encodeproject.org/files/ENCFF811GIS/@@download/ENCFF811GIS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF037RKR bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 ENCFF884ZYH 11463996 ENCODE Processing Pipeline 2933aa7ee01063d192b54e30a4dcf234 https://www.encodeproject.org/files/ENCFF037RKR/@@download/ENCFF037RKR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF069YPC bigBed narrowPeak peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF172YHV 13660800 ENCODE Processing Pipeline aa75f246d5fdf84b0049d28e62d0dd88 https://www.encodeproject.org/files/ENCFF069YPC/@@download/ENCFF069YPC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF006MIL bed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF001TDO, ENCFF172YHV, ENCFF468GKJ, ENCFF884ZYH 628083 ENCODE Processing Pipeline f36fe92b85a570e3f0ec0ed23afb76c8 https://www.encodeproject.org/files/ENCFF006MIL/@@download/ENCFF006MIL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF944MMI bigBed narrowPeak conservative idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF006MIL 1298572 ENCODE Processing Pipeline 1989ae5571ebe9f0d97f6f6e4e4f2db6 https://www.encodeproject.org/files/ENCFF944MMI/@@download/ENCFF944MMI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF095GMM bed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF001TDO, ENCFF172YHV, ENCFF468GKJ, ENCFF884ZYH 904897 ENCODE Processing Pipeline c23284256b4100cd845e6f844e468872 https://www.encodeproject.org/files/ENCFF095GMM/@@download/ENCFF095GMM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF013NVT bigBed narrowPeak optimal idr thresholded peaks ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4, 5 ENCFF095GMM 1726934 ENCODE Processing Pipeline 5197508370eaeec2174772660fe16225 https://www.encodeproject.org/files/ENCFF013NVT/@@download/ENCFF013NVT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF938TZP fastq reads ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 1 25 paired-ended 1 ENCFF307MIM 902497612 Bradley Bernstein, Broad bdfe2e2a6faf6d6905667d3ef87bebab https://www.encodeproject.org/files/ENCFF938TZP/@@download/ENCFF938TZP.fastq.gz Illumina HiSeq 2500 archived mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample missing controlled_by ENCFF307MIM fastq reads ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 1 25 paired-ended 2 ENCFF938TZP 913614735 Bradley Bernstein, Broad 50279f6fc802bcc34d081d48f89c4a44 https://www.encodeproject.org/files/ENCFF307MIM/@@download/ENCFF307MIM.fastq.gz Illumina HiSeq 2500 archived mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample missing controlled_by ENCFF932CIF fastq reads ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 1 76 paired-ended 1 ENCFF005AGI 2569745938 Bradley Bernstein, Broad 0a80fa14d11beb41ed4a7f3a16bedd5e SRA:SRR5832731 https://www.encodeproject.org/files/ENCFF932CIF/@@download/ENCFF932CIF.fastq.gz Illumina HiSeq 2000 /files/ENCFF163PYU/, /files/ENCFF522PVI/, /files/ENCFF639RMG/, /files/ENCFF716YLE/ released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF005AGI fastq reads ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 1 76 paired-ended 2 ENCFF932CIF 2599419774 Bradley Bernstein, Broad 524c1b43aea5b25f798700b585398d6f SRA:SRR5832731 https://www.encodeproject.org/files/ENCFF005AGI/@@download/ENCFF005AGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF272GOE/, /files/ENCFF486LTO/, /files/ENCFF665BBC/, /files/ENCFF830CTU/ released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF248HFJ fastq reads ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 1 76 single-ended 1237994315 Bradley Bernstein, Broad 043aab8968af20017a6034d53619690c SRA:SRR5832729 https://www.encodeproject.org/files/ENCFF248HFJ/@@download/ENCFF248HFJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF452ROQ/, /files/ENCFF527WMD/, /files/ENCFF584YEG/ released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption, inconsistent control run_type NTR biosample ENCFF411AYK fastq reads ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 1 76 single-ended 1250491435 Bradley Bernstein, Broad 5a5881ddac006c7509750eee15d36515 SRA:SRR5832730 https://www.encodeproject.org/files/ENCFF411AYK/@@download/ENCFF411AYK.fastq.gz Illumina HiSeq 2500 /files/ENCFF057DOL/, /files/ENCFF243MZN/, /files/ENCFF452ROQ/, /files/ENCFF527WMD/, /files/ENCFF584YEG/ released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption, inconsistent control run_type NTR biosample ENCFF361ECE bam unfiltered alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 76 ENCFF248HFJ, ENCFF411AYK, ENCFF643CGH 2201742433 ENCODE Processing Pipeline ee387098b7fffbc02924f709d2ec1448 https://www.encodeproject.org/files/ENCFF361ECE/@@download/ENCFF361ECE.bam GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF142SFJ bam unfiltered alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 76 ENCFF248HFJ, ENCFF411AYK, ENCFF807MUK 2196681885 ENCODE Processing Pipeline 71403897536dc08e75e4e1390b65ce29 https://www.encodeproject.org/files/ENCFF142SFJ/@@download/ENCFF142SFJ.bam hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF160MJQ bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 76 ENCFF248HFJ, ENCFF411AYK, ENCFF643CGH 1672217238 ENCODE Processing Pipeline bec60f60a48b6ca87c80fb3cc62b50e0 https://www.encodeproject.org/files/ENCFF160MJQ/@@download/ENCFF160MJQ.bam GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF228BXR bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 76 ENCFF248HFJ, ENCFF411AYK, ENCFF807MUK 1671033518 ENCODE Processing Pipeline c4e1307dd51fcd7073e155f29a815b1a https://www.encodeproject.org/files/ENCFF228BXR/@@download/ENCFF228BXR.bam hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF609XOY bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 76 ENCFF807MUK, ENCFF932CIF 1697645646 ENCODE Processing Pipeline 8d033673aa47ef80dde21c715cabecfa https://www.encodeproject.org/files/ENCFF609XOY/@@download/ENCFF609XOY.bam hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF756RQR bam unfiltered alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 76 ENCFF807MUK, ENCFF932CIF 3033542466 ENCODE Processing Pipeline 99fcbcc66e4f0908846db6200f0072e1 https://www.encodeproject.org/files/ENCFF756RQR/@@download/ENCFF756RQR.bam hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF795OGB bam unfiltered alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 76 ENCFF643CGH, ENCFF932CIF 3043145767 ENCODE Processing Pipeline dff38e2c7a81241cc9fe197b236811b6 https://www.encodeproject.org/files/ENCFF795OGB/@@download/ENCFF795OGB.bam GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF624TDL bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 76 ENCFF643CGH, ENCFF932CIF 1698867036 ENCODE Processing Pipeline 61ebc8f594ae5d041ce6b5e9ae5b8cad https://www.encodeproject.org/files/ENCFF624TDL/@@download/ENCFF624TDL.bam GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF952HSF bigWig signal p-value ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 1451309192 ENCODE Processing Pipeline a2dbfc9903897d84eae0922391d55a98 https://www.encodeproject.org/files/ENCFF952HSF/@@download/ENCFF952HSF.bigWig GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF957BJD bigWig fold change over control ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF160MJQ, ENCFF754MHP, ENCFF832PWH 1533279329 ENCODE Processing Pipeline be3a79a76528593e2676844a4c0a0d75 https://www.encodeproject.org/files/ENCFF957BJD/@@download/ENCFF957BJD.bigWig GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF160DIZ bigWig fold change over control ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF160MJQ, ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 1827851447 ENCODE Processing Pipeline 9eaa1e8a6ff9a8a33c97a4e2c9ff51fe https://www.encodeproject.org/files/ENCFF160DIZ/@@download/ENCFF160DIZ.bigWig GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF812CVO bigWig signal p-value ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF160MJQ, ENCFF754MHP, ENCFF832PWH 1512254257 ENCODE Processing Pipeline 3c6179b244b0273b574ac7ed08e10cc6 https://www.encodeproject.org/files/ENCFF812CVO/@@download/ENCFF812CVO.bigWig GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF607RZH bigWig fold change over control ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 1129462349 ENCODE Processing Pipeline dd5743e183143e2145dfad942a4efc8e https://www.encodeproject.org/files/ENCFF607RZH/@@download/ENCFF607RZH.bigWig GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF059EPZ bigWig signal p-value ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF160MJQ, ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 1877969920 ENCODE Processing Pipeline 73ec8b71bfe6850bbba898c461aff398 https://www.encodeproject.org/files/ENCFF059EPZ/@@download/ENCFF059EPZ.bigWig GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF407AVQ bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 6331374 ENCODE Processing Pipeline 2192572c25185115a03da81a49056dcc https://www.encodeproject.org/files/ENCFF407AVQ/@@download/ENCFF407AVQ.bed.gz GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF204UKR bigWig fold change over control ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ 1476551098 ENCODE Processing Pipeline ddbef13dfd9a55da6618e5753294a485 https://www.encodeproject.org/files/ENCFF204UKR/@@download/ENCFF204UKR.bigWig hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF032DEW bed narrowPeak optimal idr thresholded peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF001TDO, ENCFF227KPY, ENCFF399PZK, ENCFF524ADR 1077256 ENCODE Processing Pipeline 2af95dd3b3a987bf9d9c29d4340c0e5b https://www.encodeproject.org/files/ENCFF032DEW/@@download/ENCFF032DEW.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF107AGX bigBed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF067GVZ 13489051 ENCODE Processing Pipeline 69800a6d5efcadab5df34f3a2ca3c9e8 https://www.encodeproject.org/files/ENCFF107AGX/@@download/ENCFF107AGX.bigBed GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF143JII bigBed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF920OTP 13143198 ENCODE Processing Pipeline 5d8decae2cf0a446044d2171ede936b2 https://www.encodeproject.org/files/ENCFF143JII/@@download/ENCFF143JII.bigBed GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF872OSO bigWig fold change over control ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 1132819217 ENCODE Processing Pipeline 922df4877a5d913b45981a6e2ac064e7 https://www.encodeproject.org/files/ENCFF872OSO/@@download/ENCFF872OSO.bigWig hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF606RVV bigWig fold change over control ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 1825879153 ENCODE Processing Pipeline dd060f146f4135be66a14877c15bcecf https://www.encodeproject.org/files/ENCFF606RVV/@@download/ENCFF606RVV.bigWig hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF749AGJ bigBed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF227KPY 13896956 ENCODE Processing Pipeline ea33fd689a4591d9a0370e9aff13fac1 https://www.encodeproject.org/files/ENCFF749AGJ/@@download/ENCFF749AGJ.bigBed hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF892OXD bigBed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF399PZK 13477661 ENCODE Processing Pipeline b46b79733964878d38faa00451e1eca2 https://www.encodeproject.org/files/ENCFF892OXD/@@download/ENCFF892OXD.bigBed hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF067GVZ bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF160MJQ, ENCFF624TDL, ENCFF754MHP, ENCFF832PWH 7039156 ENCODE Processing Pipeline c973e25a4b6ab447e779730c6aa72de4 https://www.encodeproject.org/files/ENCFF067GVZ/@@download/ENCFF067GVZ.bed.gz GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF914BAF bigWig signal p-value ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ 1615940261 ENCODE Processing Pipeline 78a5e8dd4a2d086d9f4b79820d4dc3c1 https://www.encodeproject.org/files/ENCFF914BAF/@@download/ENCFF914BAF.bigWig hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF227KPY bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 6427945 ENCODE Processing Pipeline be3dae88aff168362e1ea5418de02669 https://www.encodeproject.org/files/ENCFF227KPY/@@download/ENCFF227KPY.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF505SOC bigBed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF524ADR 13248801 ENCODE Processing Pipeline 0b35f8a9ca3e5d2da6351a7013baee6b https://www.encodeproject.org/files/ENCFF505SOC/@@download/ENCFF505SOC.bigBed hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF920OTP bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF160MJQ, ENCFF754MHP, ENCFF832PWH 6812357 ENCODE Processing Pipeline 976e55815f02f0044611871a31ed7fa7 https://www.encodeproject.org/files/ENCFF920OTP/@@download/ENCFF920OTP.bed.gz GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF842NQF bigBed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF407AVQ 13792112 ENCODE Processing Pipeline f89d28caa6c2ba697f15f621bfb7b611 https://www.encodeproject.org/files/ENCFF842NQF/@@download/ENCFF842NQF.bigBed GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF634SLM bigBed narrowPeak optimal idr thresholded peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF616KNI 1925265 ENCODE Processing Pipeline e7ac9f37ea503a78b42a3893946bb9d0 https://www.encodeproject.org/files/ENCFF634SLM/@@download/ENCFF634SLM.bigBed GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF635DDS bigWig signal p-value ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 1388522038 ENCODE Processing Pipeline 4d6ab7a6f63c85fd35cf47c05ccef9cc https://www.encodeproject.org/files/ENCFF635DDS/@@download/ENCFF635DDS.bigWig hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF616KNI bed narrowPeak optimal idr thresholded peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF067GVZ, ENCFF407AVQ, ENCFF419RSJ, ENCFF920OTP 1080844 ENCODE Processing Pipeline f183ac930c3b377b88287518294e6d63 https://www.encodeproject.org/files/ENCFF616KNI/@@download/ENCFF616KNI.bed.gz GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF074UUI bigWig signal p-value ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 1670142023 ENCODE Processing Pipeline 8d3df7e44268ab498aded4f930bb48a6 https://www.encodeproject.org/files/ENCFF074UUI/@@download/ENCFF074UUI.bigWig hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF524ADR bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ 6900017 ENCODE Processing Pipeline fe9024e9b222cd67f905db8441a16dc3 https://www.encodeproject.org/files/ENCFF524ADR/@@download/ENCFF524ADR.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF399PZK bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 7035060 ENCODE Processing Pipeline 899d67bf2a186b1e1c4307c7366fdb12 https://www.encodeproject.org/files/ENCFF399PZK/@@download/ENCFF399PZK.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF819GWR bigBed narrowPeak optimal idr thresholded peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1, 2 ENCFF032DEW 1915607 ENCODE Processing Pipeline 63621e380abbb6f132cafc2f83c79c7d https://www.encodeproject.org/files/ENCFF819GWR/@@download/ENCFF819GWR.bigBed hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF214YCQ bam unfiltered alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF034WZZ, ENCFF350AMO, ENCFF807MUK 6485834921 ENCODE Processing Pipeline f3f682a8ff4f026034f693d5f39459fa https://www.encodeproject.org/files/ENCFF214YCQ/@@download/ENCFF214YCQ.bam hg19 released borderline replicate concordance ENCFF034WZZ fastq reads ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF350AMO 3014580987 Michael Snyder, Stanford 199cf2598eeeecc1ad7d0ffc90986dd1 SRA:SRR6212675 https://www.encodeproject.org/files/ENCFF034WZZ/@@download/ENCFF034WZZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released borderline replicate concordance ENCFF903XDQ fastq reads ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF092XAM 785297105 Michael Snyder, Stanford d393f2fcee0d1edb247fa6cbe318f88d https://www.encodeproject.org/files/ENCFF903XDQ/@@download/ENCFF903XDQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ archived borderline replicate concordance ENCFF092XAM fastq reads ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF903XDQ 764870176 Michael Snyder, Stanford 442271ceec69c51e576ba834727904f1 https://www.encodeproject.org/files/ENCFF092XAM/@@download/ENCFF092XAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ archived borderline replicate concordance ENCFF350AMO fastq reads ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF034WZZ 3001966243 Michael Snyder, Stanford ea631687971b3eee7aa578a4d36c700e SRA:SRR6212675 https://www.encodeproject.org/files/ENCFF350AMO/@@download/ENCFF350AMO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released borderline replicate concordance ENCFF427JRM bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF092XAM, ENCFF807MUK, ENCFF903XDQ 1580802423 ENCODE Processing Pipeline 82bc77620b406b1916c6fb6aadfbae27 https://www.encodeproject.org/files/ENCFF427JRM/@@download/ENCFF427JRM.bam hg19 archived borderline replicate concordance ENCFF648UKL bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF034WZZ, ENCFF350AMO, ENCFF807MUK 5771070157 ENCODE Processing Pipeline ffa58bb0007d33052218511d7b051ccd https://www.encodeproject.org/files/ENCFF648UKL/@@download/ENCFF648UKL.bam hg19 released borderline replicate concordance ENCFF829YQD fastq reads ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF077DIB 3553284188 Michael Snyder, Stanford 8f3d5e2a3005805148108228100d24cc SRA:SRR6212676 https://www.encodeproject.org/files/ENCFF829YQD/@@download/ENCFF829YQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance ENCFF077DIB fastq reads ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF829YQD 3609448390 Michael Snyder, Stanford 1cbaccd075c76af8d819aea8e97e8112 SRA:SRR6212676 https://www.encodeproject.org/files/ENCFF077DIB/@@download/ENCFF077DIB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance ENCFF576WJI bam unfiltered alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF034WZZ, ENCFF350AMO, ENCFF643CGH 6494220295 ENCODE Processing Pipeline 3c9ca5fea5345531d08d229a523954c6 https://www.encodeproject.org/files/ENCFF576WJI/@@download/ENCFF576WJI.bam GRCh38 released borderline replicate concordance ENCFF646WCS bam unfiltered alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF077DIB, ENCFF643CGH, ENCFF829YQD 6808346331 ENCODE Processing Pipeline cfd1e14687e9e1da5cc006df856753e6 https://www.encodeproject.org/files/ENCFF646WCS/@@download/ENCFF646WCS.bam GRCh38 released borderline replicate concordance ENCFF331BYU bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF034WZZ, ENCFF350AMO, ENCFF643CGH 5774061889 ENCODE Processing Pipeline 60c9eb8335f680547c61280cecd78650 https://www.encodeproject.org/files/ENCFF331BYU/@@download/ENCFF331BYU.bam GRCh38 released borderline replicate concordance ENCFF809OVE bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF077DIB, ENCFF643CGH, ENCFF829YQD 5628461768 ENCODE Processing Pipeline 54b624ada36b404c5e94dd48c12b505f https://www.encodeproject.org/files/ENCFF809OVE/@@download/ENCFF809OVE.bam GRCh38 released borderline replicate concordance ENCFF065GSL bigWig signal p-value ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF809OVE, ENCFF910IKB 1449578822 ENCODE Processing Pipeline 4e372c6b06a1f0607f4dfb75ee31492c https://www.encodeproject.org/files/ENCFF065GSL/@@download/ENCFF065GSL.bigWig GRCh38 released borderline replicate concordance ENCFF018NJS bigWig signal p-value ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF227IZS, ENCFF331BYU 1422721465 ENCODE Processing Pipeline ff402319c812a49b73aea9cc91ca06ed https://www.encodeproject.org/files/ENCFF018NJS/@@download/ENCFF018NJS.bigWig GRCh38 released borderline replicate concordance ENCFF881DTU bigWig fold change over control ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF809OVE, ENCFF910IKB 1401515125 ENCODE Processing Pipeline 20df29e1f2864505509aa2e70b9ee001 https://www.encodeproject.org/files/ENCFF881DTU/@@download/ENCFF881DTU.bigWig GRCh38 released borderline replicate concordance ENCFF949FKG bigWig signal p-value ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF227IZS, ENCFF331BYU, ENCFF809OVE, ENCFF910IKB 1958476962 ENCODE Processing Pipeline e3e14239be95083b627f01835f60071c https://www.encodeproject.org/files/ENCFF949FKG/@@download/ENCFF949FKG.bigWig GRCh38 released borderline replicate concordance ENCFF709XMF bigWig fold change over control ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF227IZS, ENCFF331BYU 1344235174 ENCODE Processing Pipeline 18eb6338af656066f6531a40d9aa4eba https://www.encodeproject.org/files/ENCFF709XMF/@@download/ENCFF709XMF.bigWig GRCh38 released borderline replicate concordance ENCFF888DFU bigWig fold change over control ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF227IZS, ENCFF331BYU, ENCFF809OVE, ENCFF910IKB 2381897516 ENCODE Processing Pipeline 60a37ba2d3ef7d77407bae5e61760595 https://www.encodeproject.org/files/ENCFF888DFU/@@download/ENCFF888DFU.bigWig GRCh38 released borderline replicate concordance ENCFF276SHQ bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF227IZS, ENCFF331BYU, ENCFF809OVE, ENCFF910IKB 7268964 ENCODE Processing Pipeline 9daa06b3eedc42d8482e5902b26b0fe8 https://www.encodeproject.org/files/ENCFF276SHQ/@@download/ENCFF276SHQ.bed.gz GRCh38 released borderline replicate concordance ENCFF936EBH bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF809OVE, ENCFF910IKB 7101462 ENCODE Processing Pipeline c2b09a999f58d30b15932fa3c400984e https://www.encodeproject.org/files/ENCFF936EBH/@@download/ENCFF936EBH.bed.gz GRCh38 released borderline replicate concordance ENCFF099LLM bigBed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF936EBH 12790351 ENCODE Processing Pipeline 447fe851b7a967afa2b1643c600e2ef6 https://www.encodeproject.org/files/ENCFF099LLM/@@download/ENCFF099LLM.bigBed GRCh38 released borderline replicate concordance ENCFF787GMQ bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF227IZS, ENCFF331BYU 6947125 ENCODE Processing Pipeline cf2058649f114e1a61ff58bfe03c3e57 https://www.encodeproject.org/files/ENCFF787GMQ/@@download/ENCFF787GMQ.bed.gz GRCh38 released borderline replicate concordance ENCFF337XES bigBed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF787GMQ 13175928 ENCODE Processing Pipeline 3275647485f79b913b9b19cec31181c5 https://www.encodeproject.org/files/ENCFF337XES/@@download/ENCFF337XES.bigBed GRCh38 released borderline replicate concordance ENCFF429VZO bigBed narrowPeak optimal idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF349UTF 1926191 ENCODE Processing Pipeline 2cbfcd0ff19cfa7cb6cee8c24a2bc802 https://www.encodeproject.org/files/ENCFF429VZO/@@download/ENCFF429VZO.bigBed GRCh38 released borderline replicate concordance ENCFF814WUH bigBed narrowPeak conservative idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF805RSY 1455096 ENCODE Processing Pipeline 0ee496156a75284a28e6a905738be9a9 https://www.encodeproject.org/files/ENCFF814WUH/@@download/ENCFF814WUH.bigBed GRCh38 released borderline replicate concordance ENCFF411AZL bigBed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF276SHQ 12916297 ENCODE Processing Pipeline f9b71ac957ee7fdfe5c909a7e60067d8 https://www.encodeproject.org/files/ENCFF411AZL/@@download/ENCFF411AZL.bigBed GRCh38 released borderline replicate concordance ENCFF349UTF bed narrowPeak optimal idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF276SHQ, ENCFF419RSJ, ENCFF787GMQ, ENCFF936EBH 901584 ENCODE Processing Pipeline c5363ca9e8b87de50a6c4b50c96790de https://www.encodeproject.org/files/ENCFF349UTF/@@download/ENCFF349UTF.bed.gz GRCh38 released borderline replicate concordance ENCFF805RSY bed narrowPeak conservative idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF276SHQ, ENCFF419RSJ, ENCFF787GMQ, ENCFF936EBH 633216 ENCODE Processing Pipeline fbcbea3d75f1572267fad5a40dfd8b7e https://www.encodeproject.org/files/ENCFF805RSY/@@download/ENCFF805RSY.bed.gz GRCh38 released borderline replicate concordance ENCFF817WPX bigWig signal p-value ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF648UKL 1414450681 ENCODE Processing Pipeline a752cdac81eb12f49c3549f70cd8bb99 https://www.encodeproject.org/files/ENCFF817WPX/@@download/ENCFF817WPX.bigWig hg19 released borderline replicate concordance ENCFF768WCJ bigWig fold change over control ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF648UKL 1343213712 ENCODE Processing Pipeline 85816a02af1c44c6a7d4bc733a3b9c84 https://www.encodeproject.org/files/ENCFF768WCJ/@@download/ENCFF768WCJ.bigWig hg19 released borderline replicate concordance ENCFF924DEM bigBed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF860LBQ 13157607 ENCODE Processing Pipeline a239f6753d162bd659e4db8beab2cf8f https://www.encodeproject.org/files/ENCFF924DEM/@@download/ENCFF924DEM.bigBed hg19 released borderline replicate concordance ENCFF808HEF bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF077DIB, ENCFF807MUK, ENCFF829YQD 5627213225 ENCODE Processing Pipeline c361910b4e5b23ba73b3c3fe2a59ccfb https://www.encodeproject.org/files/ENCFF808HEF/@@download/ENCFF808HEF.bam hg19 released borderline replicate concordance ENCFF424CUZ bam unfiltered alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF077DIB, ENCFF807MUK, ENCFF829YQD 6806215623 ENCODE Processing Pipeline a9ca34013841ee0ee65fe997dc402f92 https://www.encodeproject.org/files/ENCFF424CUZ/@@download/ENCFF424CUZ.bam hg19 released borderline replicate concordance ENCFF149BEM bigWig fold change over control ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF581ZJL, ENCFF808HEF 1405955118 ENCODE Processing Pipeline 916bb858d299f566bec214d0a8d50dce https://www.encodeproject.org/files/ENCFF149BEM/@@download/ENCFF149BEM.bigWig hg19 released borderline replicate concordance ENCFF112LWM bigWig fold change over control ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF648UKL, ENCFF808HEF 2363990264 ENCODE Processing Pipeline b0b0f38a6eb8bb6b92d7e7c64bd30bf3 https://www.encodeproject.org/files/ENCFF112LWM/@@download/ENCFF112LWM.bigWig hg19 released borderline replicate concordance ENCFF152VMJ bed narrowPeak optimal idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF066ESG, ENCFF467AZP, ENCFF860LBQ 860855 ENCODE Processing Pipeline 43558d97b59309ab4ef82a6f8566b6ec https://www.encodeproject.org/files/ENCFF152VMJ/@@download/ENCFF152VMJ.bed.gz hg19 released borderline replicate concordance ENCFF574ZNK bigWig signal p-value ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF581ZJL, ENCFF808HEF 1083874738 ENCODE Processing Pipeline 47d446b598b8148b937a8f793753ed4c https://www.encodeproject.org/files/ENCFF574ZNK/@@download/ENCFF574ZNK.bigWig hg19 released borderline replicate concordance ENCFF125XVE bed narrowPeak conservative idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF066ESG, ENCFF467AZP, ENCFF860LBQ 611309 ENCODE Processing Pipeline 9f7e7af57837d5f8d66862f8b7cf3624 https://www.encodeproject.org/files/ENCFF125XVE/@@download/ENCFF125XVE.bed.gz hg19 released borderline replicate concordance ENCFF672KPX bigBed narrowPeak optimal idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF152VMJ 1862128 ENCODE Processing Pipeline db0a2436a1ec11c70addbf68484bbc66 https://www.encodeproject.org/files/ENCFF672KPX/@@download/ENCFF672KPX.bigBed hg19 released borderline replicate concordance ENCFF061INZ bigWig signal p-value ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF648UKL, ENCFF808HEF 1799211595 ENCODE Processing Pipeline 14553137d9f47295ab1a1e9bd5a47266 https://www.encodeproject.org/files/ENCFF061INZ/@@download/ENCFF061INZ.bigWig hg19 released borderline replicate concordance ENCFF066ESG bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF581ZJL, ENCFF808HEF 7153106 ENCODE Processing Pipeline bee251de2f81da98d55e8beebd9ee60d https://www.encodeproject.org/files/ENCFF066ESG/@@download/ENCFF066ESG.bed.gz hg19 released borderline replicate concordance ENCFF860LBQ bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF648UKL 6939738 ENCODE Processing Pipeline 2fa824b16ec57e89bc5dd1fd3a482e7e https://www.encodeproject.org/files/ENCFF860LBQ/@@download/ENCFF860LBQ.bed.gz hg19 released borderline replicate concordance ENCFF467AZP bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF648UKL, ENCFF808HEF 7191476 ENCODE Processing Pipeline a0296cabd69d272ea5f71439820c83d7 https://www.encodeproject.org/files/ENCFF467AZP/@@download/ENCFF467AZP.bed.gz hg19 released borderline replicate concordance ENCFF743MYW bigBed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF066ESG 12845522 ENCODE Processing Pipeline 504f9ceb167752ace170b39c90cb2ea4 https://www.encodeproject.org/files/ENCFF743MYW/@@download/ENCFF743MYW.bigBed hg19 released borderline replicate concordance ENCFF422SRO bigBed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF467AZP 12816729 ENCODE Processing Pipeline 854c223a8e4499747064d581706df02e https://www.encodeproject.org/files/ENCFF422SRO/@@download/ENCFF422SRO.bigBed hg19 released borderline replicate concordance ENCFF870SFC bigBed narrowPeak conservative idr thresholded peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF125XVE 1139295 ENCODE Processing Pipeline 7424d052a886d66a6126d673b94f2aaa https://www.encodeproject.org/files/ENCFF870SFC/@@download/ENCFF870SFC.bigBed hg19 released borderline replicate concordance ENCFF863KYX bam unfiltered alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEG, ENCFF807MUK 1465606119 ENCODE Processing Pipeline db8f0676bdb274b059f6cbd99e42a760 https://www.encodeproject.org/files/ENCFF863KYX/@@download/ENCFF863KYX.bam hg19 released low read length, borderline replicate concordance ENCFF241FSZ bam unfiltered alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEH, ENCFF807MUK 1275148385 ENCODE Processing Pipeline e9ea2cc7b3a75f6711c4a3a0f598fcd7 https://www.encodeproject.org/files/ENCFF241FSZ/@@download/ENCFF241FSZ.bam hg19 released low read length, borderline replicate concordance ENCFF236TAN bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 663870964 ENCODE Processing Pipeline 5a688c23b9cab4e7d947ea6636549a9f https://www.encodeproject.org/files/ENCFF236TAN/@@download/ENCFF236TAN.bigWig hg19 released low read length, borderline replicate concordance ENCFF524IUN bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 556392602 ENCODE Processing Pipeline 6fe06ea59312add8c8a9c4b73f6f766c https://www.encodeproject.org/files/ENCFF524IUN/@@download/ENCFF524IUN.bigWig hg19 released low read length, borderline replicate concordance ENCFF354CCY bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 5151457 ENCODE Processing Pipeline 7b71ba6dd4b8df5a28140cd8a4bdce0d https://www.encodeproject.org/files/ENCFF354CCY/@@download/ENCFF354CCY.bed.gz hg19 released low read length, borderline replicate concordance ENCFF312ZWV bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF817NEK, ENCFF990TGI 5150331 ENCODE Processing Pipeline b379e1f62b6e4464026bbb3b089b01f2 https://www.encodeproject.org/files/ENCFF312ZWV/@@download/ENCFF312ZWV.bed.gz hg19 released low read length, borderline replicate concordance ENCFF220IDX bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF312ZWV 11104526 ENCODE Processing Pipeline ed41248d1cb1803ce3b2786ccae055a2 https://www.encodeproject.org/files/ENCFF220IDX/@@download/ENCFF220IDX.bigBed hg19 released low read length, borderline replicate concordance ENCFF872JGK bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF354CCY 11274593 ENCODE Processing Pipeline 1ce1ac512067cbf19fa7a3a4a2096c10 https://www.encodeproject.org/files/ENCFF872JGK/@@download/ENCFF872JGK.bigBed hg19 released low read length, borderline replicate concordance ENCFF778HHP bigBed narrowPeak conservative idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF448GYO 260815 ENCODE Processing Pipeline 5ae877c8bc3bcf4b0879b8aad565ffaf https://www.encodeproject.org/files/ENCFF778HHP/@@download/ENCFF778HHP.bigBed hg19 released low read length, borderline replicate concordance ENCFF438OCS bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF893SRK 13596310 ENCODE Processing Pipeline f0184413cc5cec6f59cbc6d5e23d0e4f https://www.encodeproject.org/files/ENCFF438OCS/@@download/ENCFF438OCS.bigBed hg19 released low read length, borderline replicate concordance ENCFF893SRK bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF791YJK, ENCFF817NEK, ENCFF863VMN, ENCFF990TGI 6516248 ENCODE Processing Pipeline 5e60e9598bea6595379e33e936412c27 https://www.encodeproject.org/files/ENCFF893SRK/@@download/ENCFF893SRK.bed.gz hg19 released low read length, borderline replicate concordance ENCFF448GYO bed narrowPeak conservative idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF312ZWV, ENCFF354CCY, ENCFF893SRK 104114 ENCODE Processing Pipeline 2c24a72b7801c61583a71ef31df9c8e6 https://www.encodeproject.org/files/ENCFF448GYO/@@download/ENCFF448GYO.bed.gz hg19 released low read length, borderline replicate concordance ENCFF744RFJ bigBed narrowPeak optimal idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF614VFL 300180 ENCODE Processing Pipeline 0295efc8ccdca12d0301eb0ae63bfe66 https://www.encodeproject.org/files/ENCFF744RFJ/@@download/ENCFF744RFJ.bigBed hg19 released low read length, borderline replicate concordance ENCFF614VFL bed narrowPeak optimal idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF312ZWV, ENCFF354CCY, ENCFF893SRK 129340 ENCODE Processing Pipeline 36b24c36febd1db2d5ea0e2fc9789689 https://www.encodeproject.org/files/ENCFF614VFL/@@download/ENCFF614VFL.bed.gz hg19 released low read length, borderline replicate concordance ENCFF002EEG fastq reads ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1188196599 Michael Snyder, Stanford b35b53142ba83439bcfa8a9ce4fef9a9 SRA:SRR5111185 https://www.encodeproject.org/files/ENCFF002EEG/@@download/ENCFF002EEG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, borderline replicate concordance ENCFF002EEH fastq reads ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 1012786568 Michael Snyder, Stanford 02b8b1967443489db18c2fab3069395e SRA:SRR5111186 https://www.encodeproject.org/files/ENCFF002EEH/@@download/ENCFF002EEH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, borderline replicate concordance ENCFF791YJK bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEG, ENCFF807MUK 1061498700 ENCODE Processing Pipeline 427d87371e59c873ad6e54381a95e79e https://www.encodeproject.org/files/ENCFF791YJK/@@download/ENCFF791YJK.bam hg19 released low read length, borderline replicate concordance ENCFF990TGI bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEH, ENCFF807MUK 918759662 ENCODE Processing Pipeline 8a5eeeaa4621bff5b64f94d41f6678cf https://www.encodeproject.org/files/ENCFF990TGI/@@download/ENCFF990TGI.bam hg19 released low read length, borderline replicate concordance ENCFF948LVO bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 663569192 ENCODE Processing Pipeline 7141ca562e93b2718ee26ec65a75dca9 https://www.encodeproject.org/files/ENCFF948LVO/@@download/ENCFF948LVO.bigWig hg19 archived low read length, borderline replicate concordance ENCFF311AIH bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF817NEK, ENCFF990TGI 502494965 ENCODE Processing Pipeline e0056f3dcd17f0f7e7c63d780a8e3f7c https://www.encodeproject.org/files/ENCFF311AIH/@@download/ENCFF311AIH.bigWig hg19 released low read length, borderline replicate concordance ENCFF537WCG bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF791YJK, ENCFF817NEK, ENCFF863VMN, ENCFF990TGI 1117975508 ENCODE Processing Pipeline c216ffe0976ee1bc439e89a3b6e901d9 https://www.encodeproject.org/files/ENCFF537WCG/@@download/ENCFF537WCG.bigWig hg19 released low read length, borderline replicate concordance ENCFF676WSO bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF817NEK, ENCFF990TGI 498384476 ENCODE Processing Pipeline 3ad350286ca345c72f4f93d3e85499e7 https://www.encodeproject.org/files/ENCFF676WSO/@@download/ENCFF676WSO.bigWig hg19 released low read length, borderline replicate concordance ENCFF903OJS bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 540195754 ENCODE Processing Pipeline f210ed16f7f5fe3849542af10127cb37 https://www.encodeproject.org/files/ENCFF903OJS/@@download/ENCFF903OJS.bigWig hg19 archived low read length, borderline replicate concordance ENCFF123JFG bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF791YJK, ENCFF817NEK, ENCFF863VMN, ENCFF990TGI 1152460489 ENCODE Processing Pipeline 8cf5ea7d41bb349d9cdf1945106394cd https://www.encodeproject.org/files/ENCFF123JFG/@@download/ENCFF123JFG.bigWig hg19 released low read length, borderline replicate concordance ENCFF047PAI bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 5301833 ENCODE Processing Pipeline 44b552379b1227ad47d48d6578374815 https://www.encodeproject.org/files/ENCFF047PAI/@@download/ENCFF047PAI.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF913EOX bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF817NEK, ENCFF990TGI 5352496 ENCODE Processing Pipeline 93f4a5e2dc81f861c6dd9ad1759fbe26 https://www.encodeproject.org/files/ENCFF913EOX/@@download/ENCFF913EOX.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF887HYM bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF791YJK, ENCFF817NEK, ENCFF863VMN, ENCFF990TGI 6737236 ENCODE Processing Pipeline 2f900159e336674102839e4ae3340315 https://www.encodeproject.org/files/ENCFF887HYM/@@download/ENCFF887HYM.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF481WHV bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF047PAI 11332015 ENCODE Processing Pipeline fb41045207fa25e536d2e236751d20cb https://www.encodeproject.org/files/ENCFF481WHV/@@download/ENCFF481WHV.bigBed hg19 archived low read length, borderline replicate concordance ENCFF547NAP bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF913EOX 11205403 ENCODE Processing Pipeline 683e2775b1a077b7ad6efc20089ee8ae https://www.encodeproject.org/files/ENCFF547NAP/@@download/ENCFF547NAP.bigBed hg19 archived low read length, borderline replicate concordance ENCFF738XGU bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF887HYM 13602184 ENCODE Processing Pipeline 34e650006abe3c92f13e1cdcb2216d04 https://www.encodeproject.org/files/ENCFF738XGU/@@download/ENCFF738XGU.bigBed hg19 archived low read length, borderline replicate concordance ENCFF871SLH bam unfiltered alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEH, ENCFF643CGH 1281212422 ENCODE Processing Pipeline d479012d329710b1200db7b073280cba https://www.encodeproject.org/files/ENCFF871SLH/@@download/ENCFF871SLH.bam GRCh38 released low read length, borderline replicate concordance ENCFF245SLR bam unfiltered alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEG, ENCFF643CGH 1473102369 ENCODE Processing Pipeline cddaebcb379ba2424ed3293b310d65cc https://www.encodeproject.org/files/ENCFF245SLR/@@download/ENCFF245SLR.bam GRCh38 released low read length, borderline replicate concordance ENCFF641NQL bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEH, ENCFF643CGH 918424237 ENCODE Processing Pipeline f8409b28c4d2adce858bfd685df87e95 https://www.encodeproject.org/files/ENCFF641NQL/@@download/ENCFF641NQL.bam GRCh38 released low read length, borderline replicate concordance ENCFF883UVV bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEG, ENCFF643CGH 1061085415 ENCODE Processing Pipeline 3225fb9d10b6a58dff7953c4e1314784 https://www.encodeproject.org/files/ENCFF883UVV/@@download/ENCFF883UVV.bam GRCh38 released low read length, borderline replicate concordance ENCFF891HCB bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF883UVV 561840823 ENCODE Processing Pipeline 3149c01c1b5916a07626b67f2d79ae69 https://www.encodeproject.org/files/ENCFF891HCB/@@download/ENCFF891HCB.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF151BDL bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF536CTV, ENCFF641NQL 536040344 ENCODE Processing Pipeline 267a23e8c18b3ec6d500ec56104bc077 https://www.encodeproject.org/files/ENCFF151BDL/@@download/ENCFF151BDL.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF947GVX bigWig signal p-value ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF511RLN, ENCFF536CTV, ENCFF641NQL, ENCFF883UVV 1008695957 ENCODE Processing Pipeline 096fc4c9098f0a73ca94cca71408e6aa https://www.encodeproject.org/files/ENCFF947GVX/@@download/ENCFF947GVX.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF257PRI bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF883UVV 565065776 ENCODE Processing Pipeline bfe3f050b608eabc9055207efd98617e https://www.encodeproject.org/files/ENCFF257PRI/@@download/ENCFF257PRI.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF702NNJ bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF536CTV, ENCFF641NQL 472834919 ENCODE Processing Pipeline a7d818f7a6a6bd24a52b30b0345a2e5e https://www.encodeproject.org/files/ENCFF702NNJ/@@download/ENCFF702NNJ.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF584FVR bigWig fold change over control ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF511RLN, ENCFF536CTV, ENCFF641NQL, ENCFF883UVV 1162800599 ENCODE Processing Pipeline 6e9e81a2ab0521a2c41b2e25ff5c2f26 https://www.encodeproject.org/files/ENCFF584FVR/@@download/ENCFF584FVR.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF177OKJ bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF883UVV 5147769 ENCODE Processing Pipeline 286cde32bc8debc2f78ce98ec8ca9ba0 https://www.encodeproject.org/files/ENCFF177OKJ/@@download/ENCFF177OKJ.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF399PNV bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF536CTV, ENCFF641NQL 5094097 ENCODE Processing Pipeline a6014b274a0f88e95c12f6acb13c733d https://www.encodeproject.org/files/ENCFF399PNV/@@download/ENCFF399PNV.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF722WOX bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF177OKJ 11278951 ENCODE Processing Pipeline 3f48a02ef339d5b9669ec2db5d879e02 https://www.encodeproject.org/files/ENCFF722WOX/@@download/ENCFF722WOX.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF435XAL bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF511RLN, ENCFF536CTV, ENCFF641NQL, ENCFF883UVV 6525588 ENCODE Processing Pipeline 7d2570e82bce07c9ab66726d811ab64d https://www.encodeproject.org/files/ENCFF435XAL/@@download/ENCFF435XAL.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF068WPN bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 ENCFF399PNV 11093070 ENCODE Processing Pipeline f89cf821a92544b55b3dfd23263fdb69 https://www.encodeproject.org/files/ENCFF068WPN/@@download/ENCFF068WPN.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF970TMI bigBed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF435XAL 13609296 ENCODE Processing Pipeline 8ef777dcd9d8c834ed97dbeaa36dccef https://www.encodeproject.org/files/ENCFF970TMI/@@download/ENCFF970TMI.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF988ZSS bed narrowPeak conservative idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF177OKJ, ENCFF399PNV, ENCFF419RSJ, ENCFF435XAL 109395 ENCODE Processing Pipeline 3b5b598b0c0049faa1f65aa6d3b4a54d https://www.encodeproject.org/files/ENCFF988ZSS/@@download/ENCFF988ZSS.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF267EPB bigBed narrowPeak conservative idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF988ZSS 266637 ENCODE Processing Pipeline 014338b7cdbfa8a827dfde4fe56aebdc https://www.encodeproject.org/files/ENCFF267EPB/@@download/ENCFF267EPB.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF721NEC bed narrowPeak optimal idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF177OKJ, ENCFF399PNV, ENCFF419RSJ, ENCFF435XAL 138410 ENCODE Processing Pipeline 76555a1a7ae5759aefc06adf8608e6a4 https://www.encodeproject.org/files/ENCFF721NEC/@@download/ENCFF721NEC.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF682CKU bigBed narrowPeak optimal idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF721NEC 312103 ENCODE Processing Pipeline c0cb53a1fd96956f05ac2a8444ab44fe https://www.encodeproject.org/files/ENCFF682CKU/@@download/ENCFF682CKU.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF964DTI bigBed narrowPeak optimal idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF220KNX 227145 ENCODE Processing Pipeline c091e2356a3a468ebb11f45ba4d01424 https://www.encodeproject.org/files/ENCFF964DTI/@@download/ENCFF964DTI.bigBed hg19 archived low read length, borderline replicate concordance ENCFF220KNX bed narrowPeak optimal idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF047PAI, ENCFF887HYM, ENCFF913EOX 114301 ENCODE Processing Pipeline 530d1b8c3c1ea42f3b9576f68d93b047 https://www.encodeproject.org/files/ENCFF220KNX/@@download/ENCFF220KNX.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF927JRO bed narrowPeak conservative idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF047PAI, ENCFF887HYM, ENCFF913EOX 90877 ENCODE Processing Pipeline 24061eb6bd9291cc6642319ba1ef390d https://www.encodeproject.org/files/ENCFF927JRO/@@download/ENCFF927JRO.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF400OCY bigBed narrowPeak conservative idr thresholded peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF927JRO 196948 ENCODE Processing Pipeline 988ce887df15dbc8e5899721a9a97d91 https://www.encodeproject.org/files/ENCFF400OCY/@@download/ENCFF400OCY.bigBed hg19 archived low read length, borderline replicate concordance ENCFF712HZH bam unfiltered alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDH, ENCFF807MUK 1485441563 ENCODE Processing Pipeline 1239529199bd434c8e7117e427468985 https://www.encodeproject.org/files/ENCFF712HZH/@@download/ENCFF712HZH.bam hg19 released low read length ENCFF241OVG bam unfiltered alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDF, ENCFF807MUK 1294060508 ENCODE Processing Pipeline 1d82cb7b7257e774e4344ef66eab3abb https://www.encodeproject.org/files/ENCFF241OVG/@@download/ENCFF241OVG.bam hg19 released low read length ENCFF591QCR bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 588556617 ENCODE Processing Pipeline c216becea3ae378dd1dbb6acc5c22bad https://www.encodeproject.org/files/ENCFF591QCR/@@download/ENCFF591QCR.bigWig hg19 released low read length ENCFF428DLR bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 541206992 ENCODE Processing Pipeline bf220c149f9be02c65ecce1ae1e65986 https://www.encodeproject.org/files/ENCFF428DLR/@@download/ENCFF428DLR.bigWig hg19 released low read length ENCFF145POH bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 5466977 ENCODE Processing Pipeline 24d641fb0de8cbc78252718eaaf43720 https://www.encodeproject.org/files/ENCFF145POH/@@download/ENCFF145POH.bed.gz hg19 released low read length ENCFF404JHL bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF997ZWI 11581429 ENCODE Processing Pipeline a0b061b30542de62201c98287e02e39b https://www.encodeproject.org/files/ENCFF404JHL/@@download/ENCFF404JHL.bigBed hg19 released low read length ENCFF492VYK bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF002SPV, ENCFF316UXC 4750633 ENCODE Processing Pipeline e9262f050b4710c4228eafb6a54d6353 https://www.encodeproject.org/files/ENCFF492VYK/@@download/ENCFF492VYK.bed.gz hg19 released low read length ENCFF997ZWI bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF002SPV, ENCFF226KER, ENCFF316UXC, ENCFF939XHK 6401276 ENCODE Processing Pipeline 9cdaf1c4d5a90580d4be7785514aa589 https://www.encodeproject.org/files/ENCFF997ZWI/@@download/ENCFF997ZWI.bed.gz hg19 released low read length ENCFF355UVY bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF492VYK 11191819 ENCODE Processing Pipeline 9ad4f0257d5a427759460c981487b629 https://www.encodeproject.org/files/ENCFF355UVY/@@download/ENCFF355UVY.bigBed hg19 released low read length ENCFF328DSQ bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF145POH 11295673 ENCODE Processing Pipeline 13e53c06254d277c57678afe7e66e06e https://www.encodeproject.org/files/ENCFF328DSQ/@@download/ENCFF328DSQ.bigBed hg19 released low read length ENCFF117VVI bigBed narrowPeak conservative idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF097SYL 423590 ENCODE Processing Pipeline d22a5b89cc9a6341661d695b362b4ddf https://www.encodeproject.org/files/ENCFF117VVI/@@download/ENCFF117VVI.bigBed hg19 released low read length ENCFF411BAO bed narrowPeak optimal idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF145POH, ENCFF492VYK, ENCFF997ZWI 417897 ENCODE Processing Pipeline 93e40b0388115ea73bf792c3d8ac3034 https://www.encodeproject.org/files/ENCFF411BAO/@@download/ENCFF411BAO.bed.gz hg19 released low read length ENCFF177JGY bigBed narrowPeak optimal idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF411BAO 805803 ENCODE Processing Pipeline cc2ac20963a0abea6c67580456fa6a5d https://www.encodeproject.org/files/ENCFF177JGY/@@download/ENCFF177JGY.bigBed hg19 released low read length ENCFF097SYL bed narrowPeak conservative idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF145POH, ENCFF492VYK, ENCFF997ZWI 234403 ENCODE Processing Pipeline b014a7ba5b6d913941ab601f7c540536 https://www.encodeproject.org/files/ENCFF097SYL/@@download/ENCFF097SYL.bed.gz hg19 released low read length ENCFF002EDF fastq reads ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 1046200758 Michael Snyder, Stanford 47ad20de2ae15758c8b1a8ca915d20b1 SRA:SRR5111166 https://www.encodeproject.org/files/ENCFF002EDF/@@download/ENCFF002EDF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECN/ released low read length ENCFF002EDH fastq reads ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 1231974210 Michael Snyder, Stanford 06e50a74824f6c3c040cbd5475220e58 SRA:SRR5111167 https://www.encodeproject.org/files/ENCFF002EDH/@@download/ENCFF002EDH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECO/ released low read length ENCFF002SPV bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDF, ENCFF807MUK 949063660 ENCODE Processing Pipeline d7acef6d19483afc748b16abb4fda67a https://www.encodeproject.org/files/ENCFF002SPV/@@download/ENCFF002SPV.bam hg19 released low read length ENCFF226KER bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDH, ENCFF807MUK 1065080686 ENCODE Processing Pipeline a9936175408974600f64fc18aa957090 https://www.encodeproject.org/files/ENCFF226KER/@@download/ENCFF226KER.bam hg19 released low read length ENCFF024VPZ bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF002SPV, ENCFF316UXC 477355349 ENCODE Processing Pipeline b5b1a6a5c0da2a158d145cde4ffc56c8 https://www.encodeproject.org/files/ENCFF024VPZ/@@download/ENCFF024VPZ.bigWig hg19 released low read length ENCFF210ASQ bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF002SPV, ENCFF226KER, ENCFF316UXC, ENCFF939XHK 1120826476 ENCODE Processing Pipeline 114e6f5550a4c3df9f45baf114ebbdc1 https://www.encodeproject.org/files/ENCFF210ASQ/@@download/ENCFF210ASQ.bigWig hg19 released low read length ENCFF478JTG bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 594995238 ENCODE Processing Pipeline 41562ad74756c83344e240e917711757 https://www.encodeproject.org/files/ENCFF478JTG/@@download/ENCFF478JTG.bigWig hg19 archived low read length ENCFF233PJI bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF575MOS 11357731 ENCODE Processing Pipeline a9b577b15a5affe1c5e57c2ecf45f5c9 https://www.encodeproject.org/files/ENCFF233PJI/@@download/ENCFF233PJI.bigBed hg19 archived low read length ENCFF638ZBF bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF002SPV, ENCFF316UXC 654008679 ENCODE Processing Pipeline 931bd9ce71bdec23749e93c45ef825ba https://www.encodeproject.org/files/ENCFF638ZBF/@@download/ENCFF638ZBF.bigWig hg19 released low read length ENCFF922ANL bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF507YIO 11589257 ENCODE Processing Pipeline 5da43514f0b4515854585acc22bf035d https://www.encodeproject.org/files/ENCFF922ANL/@@download/ENCFF922ANL.bigBed hg19 archived low read length ENCFF384GIM bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF002SPV, ENCFF226KER, ENCFF316UXC, ENCFF939XHK 993433917 ENCODE Processing Pipeline ccdf468e40011940aa71fe2d73a96e18 https://www.encodeproject.org/files/ENCFF384GIM/@@download/ENCFF384GIM.bigWig hg19 released low read length ENCFF575MOS bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 5634715 ENCODE Processing Pipeline 37cdf712ea0817270071e52cbffc9b68 https://www.encodeproject.org/files/ENCFF575MOS/@@download/ENCFF575MOS.bed.gz hg19 archived low read length ENCFF507YIO bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF002SPV, ENCFF226KER, ENCFF316UXC, ENCFF939XHK 6557271 ENCODE Processing Pipeline 19da4ac7e2c8e47e4f920143572f11e5 https://www.encodeproject.org/files/ENCFF507YIO/@@download/ENCFF507YIO.bed.gz hg19 archived low read length ENCFF358MCH bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF554QCN 11343251 ENCODE Processing Pipeline 8e35e54ba57230f0ee4bd350d57a4f41 https://www.encodeproject.org/files/ENCFF358MCH/@@download/ENCFF358MCH.bigBed hg19 archived low read length ENCFF270YXB bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 551454328 ENCODE Processing Pipeline 34fe30abd001d273620975746d011270 https://www.encodeproject.org/files/ENCFF270YXB/@@download/ENCFF270YXB.bigWig hg19 archived low read length ENCFF554QCN bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF002SPV, ENCFF316UXC 4947267 ENCODE Processing Pipeline 4e0f932449acfa38e4e210070f1013c2 https://www.encodeproject.org/files/ENCFF554QCN/@@download/ENCFF554QCN.bed.gz hg19 archived low read length ENCFF732HFY bam unfiltered alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDH, ENCFF643CGH 1492127048 ENCODE Processing Pipeline 16f803dffb2fd1f146e089b03709f1bb https://www.encodeproject.org/files/ENCFF732HFY/@@download/ENCFF732HFY.bam GRCh38 released low read length ENCFF145LHC bam unfiltered alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDF, ENCFF643CGH 1300835093 ENCODE Processing Pipeline 7146b7afda4ca7656d9a799dc1d182b4 https://www.encodeproject.org/files/ENCFF145LHC/@@download/ENCFF145LHC.bam GRCh38 released low read length ENCFF010EXG bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDF, ENCFF643CGH 948587275 ENCODE Processing Pipeline 4f5be2535976fcf52a49145a0a327651 https://www.encodeproject.org/files/ENCFF010EXG/@@download/ENCFF010EXG.bam GRCh38 released low read length ENCFF387WOS bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDH, ENCFF643CGH 1064498560 ENCODE Processing Pipeline aef5b949bbaff2848819b455c07a31e2 https://www.encodeproject.org/files/ENCFF387WOS/@@download/ENCFF387WOS.bam GRCh38 released low read length ENCFF908SKO bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF387WOS, ENCFF714ZPY 530771784 ENCODE Processing Pipeline 0ff5a7c6f8b4cfe202b6daf6f393d49d https://www.encodeproject.org/files/ENCFF908SKO/@@download/ENCFF908SKO.bigWig GRCh38 released low read length ENCFF404NTU bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF010EXG, ENCFF459QXO 533380170 ENCODE Processing Pipeline dfb6558a56750e5f9f29066db3bb386b https://www.encodeproject.org/files/ENCFF404NTU/@@download/ENCFF404NTU.bigWig GRCh38 released low read length ENCFF230ZYH bigWig signal p-value ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF010EXG, ENCFF387WOS, ENCFF459QXO, ENCFF714ZPY 1067243020 ENCODE Processing Pipeline e7995b083205bc8f1019587cb699079d https://www.encodeproject.org/files/ENCFF230ZYH/@@download/ENCFF230ZYH.bigWig GRCh38 released low read length ENCFF453QDD bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF387WOS, ENCFF714ZPY 550595453 ENCODE Processing Pipeline 4cf54f753118fe4e446ca4cff0a9876e https://www.encodeproject.org/files/ENCFF453QDD/@@download/ENCFF453QDD.bigWig GRCh38 released low read length ENCFF230VKS bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF010EXG, ENCFF459QXO 480407185 ENCODE Processing Pipeline a4d06ca0bea17ef318e6f90e46a482a7 https://www.encodeproject.org/files/ENCFF230VKS/@@download/ENCFF230VKS.bigWig GRCh38 released low read length ENCFF218QWU bigWig fold change over control ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF010EXG, ENCFF387WOS, ENCFF459QXO, ENCFF714ZPY 1121689195 ENCODE Processing Pipeline 632b5311666af9bcf321145f7667cfe9 https://www.encodeproject.org/files/ENCFF218QWU/@@download/ENCFF218QWU.bigWig GRCh38 released low read length ENCFF432JOE bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF387WOS, ENCFF714ZPY 5523632 ENCODE Processing Pipeline 3f1082d909255cc778725efbbe8853ce https://www.encodeproject.org/files/ENCFF432JOE/@@download/ENCFF432JOE.bed.gz GRCh38 released low read length ENCFF928RGF bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF010EXG, ENCFF459QXO 4764825 ENCODE Processing Pipeline a9a79188d3aca161d1f8d7a01e3d6449 https://www.encodeproject.org/files/ENCFF928RGF/@@download/ENCFF928RGF.bed.gz GRCh38 released low read length ENCFF750CVD bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF010EXG, ENCFF387WOS, ENCFF459QXO, ENCFF714ZPY 6432641 ENCODE Processing Pipeline d37833c2ea73fd760b5db4934136c914 https://www.encodeproject.org/files/ENCFF750CVD/@@download/ENCFF750CVD.bed.gz GRCh38 released low read length ENCFF150CRB bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF432JOE 11373628 ENCODE Processing Pipeline 431450743d9af08d01e9aea438de00a1 https://www.encodeproject.org/files/ENCFF150CRB/@@download/ENCFF150CRB.bigBed GRCh38 released low read length ENCFF271KFE bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 ENCFF928RGF 11206422 ENCODE Processing Pipeline 4e9344235cdd53a66e81552c49c71ed0 https://www.encodeproject.org/files/ENCFF271KFE/@@download/ENCFF271KFE.bigBed GRCh38 released low read length ENCFF670CRK bigBed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF750CVD 11623924 ENCODE Processing Pipeline a1e13a850627e48f1e69b0f21bed5c85 https://www.encodeproject.org/files/ENCFF670CRK/@@download/ENCFF670CRK.bigBed GRCh38 released low read length ENCFF641LIZ bed narrowPeak conservative idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF432JOE, ENCFF750CVD, ENCFF928RGF 237908 ENCODE Processing Pipeline 49f95d9c1e274055b90fd396494eacae https://www.encodeproject.org/files/ENCFF641LIZ/@@download/ENCFF641LIZ.bed.gz GRCh38 released low read length ENCFF853WGC bigBed narrowPeak conservative idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF641LIZ 429904 ENCODE Processing Pipeline 1b68d30c91984768df896c12b585d1cb https://www.encodeproject.org/files/ENCFF853WGC/@@download/ENCFF853WGC.bigBed GRCh38 released low read length ENCFF672LKL bed narrowPeak optimal idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF432JOE, ENCFF750CVD, ENCFF928RGF 424665 ENCODE Processing Pipeline 2001cc471fbc0c824e0764f054ca41fb https://www.encodeproject.org/files/ENCFF672LKL/@@download/ENCFF672LKL.bed.gz GRCh38 released low read length ENCFF567MLT bigBed narrowPeak optimal idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF672LKL 818614 ENCODE Processing Pipeline b20b1a8ddff4256de012095fffa15530 https://www.encodeproject.org/files/ENCFF567MLT/@@download/ENCFF567MLT.bigBed GRCh38 released low read length ENCFF692TOS bigBed narrowPeak optimal idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF939XMX 602277 ENCODE Processing Pipeline d45b69a729c84d840ff9610fdb43b8f5 https://www.encodeproject.org/files/ENCFF692TOS/@@download/ENCFF692TOS.bigBed hg19 archived low read length ENCFF511CFI bed narrowPeak conservative idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF507YIO, ENCFF554QCN, ENCFF575MOS 227424 ENCODE Processing Pipeline d099417facf11fc85400989469cca657 https://www.encodeproject.org/files/ENCFF511CFI/@@download/ENCFF511CFI.bed.gz hg19 archived low read length ENCFF052TGN bigBed narrowPeak conservative idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF511CFI 415786 ENCODE Processing Pipeline 993b3213858cce3cd3b9651b466caab3 https://www.encodeproject.org/files/ENCFF052TGN/@@download/ENCFF052TGN.bigBed hg19 archived low read length ENCFF939XMX bed narrowPeak optimal idr thresholded peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF507YIO, ENCFF554QCN, ENCFF575MOS 387529 ENCODE Processing Pipeline b5dec8637459a297eb2a3963dce733a9 https://www.encodeproject.org/files/ENCFF939XMX/@@download/ENCFF939XMX.bed.gz hg19 archived low read length ENCFF819VWY bam unfiltered alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 36 ENCFF332FPJ, ENCFF807MUK 2726403412 ENCODE Processing Pipeline de6efeb396a106c2359c2bed63b02d3e https://www.encodeproject.org/files/ENCFF819VWY/@@download/ENCFF819VWY.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF332FPJ fastq reads ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 1 36 single-ended 2286606829 Bradley Bernstein, Broad f8533f589c15e1056a31a72a7e15e323 https://www.encodeproject.org/files/ENCFF332FPJ/@@download/ENCFF332FPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF853HFC/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF248CVW fastq reads ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 1 76 paired-ended 1 ENCFF911ENA 2129192186 Bradley Bernstein, Broad a91fdd5a1a1f813dbc2162ec603606e9 https://www.encodeproject.org/files/ENCFF248CVW/@@download/ENCFF248CVW.fastq.gz Illumina HiSeq 2500 /files/ENCFF061PAW/, /files/ENCFF885SBP/ archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF911ENA fastq reads ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 1 76 paired-ended 2 ENCFF248CVW 2149281022 Bradley Bernstein, Broad 79635ec5d23c2f97e72be1b23e25d365 https://www.encodeproject.org/files/ENCFF911ENA/@@download/ENCFF911ENA.fastq.gz Illumina HiSeq 2500 /files/ENCFF061PAW/, /files/ENCFF885SBP/ archived borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF588SWK bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF332FPJ, ENCFF807MUK 706562332 ENCODE Processing Pipeline 2a00894787c908c6a9ecf0498461185b https://www.encodeproject.org/files/ENCFF588SWK/@@download/ENCFF588SWK.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF746KPQ bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF248CVW, ENCFF807MUK, ENCFF911ENA 4297122245 ENCODE Processing Pipeline 13ebda5d65b2c4101a12d839f2e69be5 https://www.encodeproject.org/files/ENCFF746KPQ/@@download/ENCFF746KPQ.bam hg19 archived borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF497MMJ fastq reads ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 1 76 single-ended 1617924394 Bradley Bernstein, Broad 870105988f7c9123128e36e7984e15e7 https://www.encodeproject.org/files/ENCFF497MMJ/@@download/ENCFF497MMJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF061PAW/, /files/ENCFF885SBP/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF452HXG fastq reads ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 1 76 single-ended 1617746320 Bradley Bernstein, Broad 6313884f45d2781a781163f757d548e1 https://www.encodeproject.org/files/ENCFF452HXG/@@download/ENCFF452HXG.fastq.gz Illumina HiSeq 2500 /files/ENCFF061PAW/, /files/ENCFF885SBP/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF497AWS bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 36 ENCFF332FPJ, ENCFF643CGH 706195109 ENCODE Processing Pipeline f71fdad515ed40a1e6854f47391020bf https://www.encodeproject.org/files/ENCFF497AWS/@@download/ENCFF497AWS.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF892FLQ bam unfiltered alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 36 ENCFF332FPJ, ENCFF643CGH 2742218946 ENCODE Processing Pipeline 64247533000130572ec270e0ccae8710 https://www.encodeproject.org/files/ENCFF892FLQ/@@download/ENCFF892FLQ.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF376TZA bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 36 ENCFF452HXG, ENCFF497MMJ, ENCFF643CGH 1391060165 ENCODE Processing Pipeline 338d78d7e7573c6c158a66114770f937 https://www.encodeproject.org/files/ENCFF376TZA/@@download/ENCFF376TZA.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF926DYA bam unfiltered alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 36 ENCFF452HXG, ENCFF497MMJ, ENCFF643CGH 2036367620 ENCODE Processing Pipeline 084daa71487b105af18d15c700149ba0 https://www.encodeproject.org/files/ENCFF926DYA/@@download/ENCFF926DYA.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF402KJD bam unfiltered alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 36 ENCFF452HXG, ENCFF497MMJ, ENCFF807MUK 2024336109 ENCODE Processing Pipeline 2e58cc26b19fc42fc61261d77cb6edc3 https://www.encodeproject.org/files/ENCFF402KJD/@@download/ENCFF402KJD.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF929MTA bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 36 ENCFF452HXG, ENCFF497MMJ, ENCFF807MUK 1391430997 ENCODE Processing Pipeline 13a13830a72a4d77aa3177ca15fc449a https://www.encodeproject.org/files/ENCFF929MTA/@@download/ENCFF929MTA.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF423MUM bigWig fold change over control ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF042EJM, ENCFF705RUU, ENCFF929MTA 1326398645 ENCODE Processing Pipeline 580334e3bcf4913d9d56ea7596ae78b5 https://www.encodeproject.org/files/ENCFF423MUM/@@download/ENCFF423MUM.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF435NVW bigWig fold change over control ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU, ENCFF929MTA 1530019269 ENCODE Processing Pipeline 229fc035256b432acdd156137730ee59 https://www.encodeproject.org/files/ENCFF435NVW/@@download/ENCFF435NVW.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF278WRY bed narrowPeak conservative idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF001TDO, ENCFF155LWQ, ENCFF220SFO, ENCFF396SZC 102658 ENCODE Processing Pipeline 232b516a9d73e37c699b1840fa5a6230 https://www.encodeproject.org/files/ENCFF278WRY/@@download/ENCFF278WRY.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF824JVH bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF170UTG, ENCFF497AWS, ENCFF567KKK 5666992 ENCODE Processing Pipeline 566a2f4b471b8f4a29361505df30f482 https://www.encodeproject.org/files/ENCFF824JVH/@@download/ENCFF824JVH.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF790MVL bigBed narrowPeak optimal idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF807XMX 408658 ENCODE Processing Pipeline 2fb7c18073413868977293a6d9b44116 https://www.encodeproject.org/files/ENCFF790MVL/@@download/ENCFF790MVL.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF463QCH bigWig signal p-value ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU, ENCFF929MTA 1262253557 ENCODE Processing Pipeline 143f604f1a8fdacaf450370483914268 https://www.encodeproject.org/files/ENCFF463QCH/@@download/ENCFF463QCH.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF396SZC bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU 5685701 ENCODE Processing Pipeline db309aea66c2b0348c6e5bc81d7be171 https://www.encodeproject.org/files/ENCFF396SZC/@@download/ENCFF396SZC.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155LWQ bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU, ENCFF929MTA 7209087 ENCODE Processing Pipeline fa09e6c055377776be399a3944efd777 https://www.encodeproject.org/files/ENCFF155LWQ/@@download/ENCFF155LWQ.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF524AXB bigBed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF155LWQ 12980183 ENCODE Processing Pipeline 3c7bafa2eca70ad0dfb4e26642b86c08 https://www.encodeproject.org/files/ENCFF524AXB/@@download/ENCFF524AXB.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF422EXS bigBed narrowPeak optimal idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF085BBF 395745 ENCODE Processing Pipeline f5507bb2ca41d57ebda5249473134c50 https://www.encodeproject.org/files/ENCFF422EXS/@@download/ENCFF422EXS.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF993RTA bigWig signal p-value ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF170UTG, ENCFF497AWS, ENCFF567KKK 989420789 ENCODE Processing Pipeline d52602a4b7ce11919c14243665286c2d https://www.encodeproject.org/files/ENCFF993RTA/@@download/ENCFF993RTA.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF848TES bigBed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF824JVH 11316983 ENCODE Processing Pipeline 67294b419ab7f96d710a46640a8ef3fe https://www.encodeproject.org/files/ENCFF848TES/@@download/ENCFF848TES.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF849PQG bigWig signal p-value ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU 1052152196 ENCODE Processing Pipeline 573a57b070e2b1b80c14c733faca4bf9 https://www.encodeproject.org/files/ENCFF849PQG/@@download/ENCFF849PQG.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF139YNH bigBed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF220SFO 12956686 ENCODE Processing Pipeline ec9b173c8dde5c69ea27251cbf68626b https://www.encodeproject.org/files/ENCFF139YNH/@@download/ENCFF139YNH.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF362ARA bigBed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF396SZC 13466491 ENCODE Processing Pipeline a733b2f659424555d40c638a2d251774 https://www.encodeproject.org/files/ENCFF362ARA/@@download/ENCFF362ARA.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF085BBF bed narrowPeak optimal idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF001TDO, ENCFF155LWQ, ENCFF220SFO, ENCFF396SZC 141143 ENCODE Processing Pipeline 62e8c175705b78fd53128f0862c166eb https://www.encodeproject.org/files/ENCFF085BBF/@@download/ENCFF085BBF.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF526BFK bigWig signal p-value ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF170UTG, ENCFF376TZA, ENCFF567KKK 1370277153 ENCODE Processing Pipeline 689ae8da7ca2acb5e25ea1950e34b52c https://www.encodeproject.org/files/ENCFF526BFK/@@download/ENCFF526BFK.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF661PPW bigWig fold change over control ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF170UTG, ENCFF376TZA, ENCFF567KKK 1296681076 ENCODE Processing Pipeline 91b3c511586892e15ef401a873d00c30 https://www.encodeproject.org/files/ENCFF661PPW/@@download/ENCFF661PPW.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF750OOG bigWig fold change over control ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF170UTG, ENCFF497AWS, ENCFF567KKK 809108261 ENCODE Processing Pipeline 40726f7858484d8410f11a7a5cb8049d https://www.encodeproject.org/files/ENCFF750OOG/@@download/ENCFF750OOG.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF885NCZ bigWig fold change over control ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF170UTG, ENCFF376TZA, ENCFF497AWS, ENCFF567KKK 1547277129 ENCODE Processing Pipeline bb17581b5c6092ef130d3167f65a708b https://www.encodeproject.org/files/ENCFF885NCZ/@@download/ENCFF885NCZ.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF272FSQ bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF170UTG, ENCFF376TZA, ENCFF567KKK 7146293 ENCODE Processing Pipeline 558b32196ccb8e4e0491a56375527030 https://www.encodeproject.org/files/ENCFF272FSQ/@@download/ENCFF272FSQ.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF220SFO bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF042EJM, ENCFF705RUU, ENCFF929MTA 7145261 ENCODE Processing Pipeline 410cd1c1651f8bf957540e7acf93b177 https://www.encodeproject.org/files/ENCFF220SFO/@@download/ENCFF220SFO.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF788QQB bigBed narrowPeak conservative idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF278WRY 309681 ENCODE Processing Pipeline c788cd40c30c020c59cf1e42f4dc6d84 https://www.encodeproject.org/files/ENCFF788QQB/@@download/ENCFF788QQB.bigBed hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF501GCE bigBed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF272FSQ 12957679 ENCODE Processing Pipeline 84d2f899536d865a72e60f3666414011 https://www.encodeproject.org/files/ENCFF501GCE/@@download/ENCFF501GCE.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF440GXW bigWig signal p-value ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF042EJM, ENCFF705RUU, ENCFF929MTA 1170299097 ENCODE Processing Pipeline ea711af24216f9c4ab86dc0133fc3d5d https://www.encodeproject.org/files/ENCFF440GXW/@@download/ENCFF440GXW.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF290IIN bigWig fold change over control ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU 838633566 ENCODE Processing Pipeline fc4baea006e26c1552989ae834bfda08 https://www.encodeproject.org/files/ENCFF290IIN/@@download/ENCFF290IIN.bigWig hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF528EBQ bed narrowPeak conservative idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF248NVZ, ENCFF272FSQ, ENCFF419RSJ, ENCFF824JVH 101931 ENCODE Processing Pipeline 6aa74e32fc760eb14f0d441051c5eac5 https://www.encodeproject.org/files/ENCFF528EBQ/@@download/ENCFF528EBQ.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF227DYU bigBed narrowPeak conservative idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF528EBQ 309293 ENCODE Processing Pipeline 96ac717959029f13b262fbaf00401309 https://www.encodeproject.org/files/ENCFF227DYU/@@download/ENCFF227DYU.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF058TRN bigWig signal p-value ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF170UTG, ENCFF376TZA, ENCFF497AWS, ENCFF567KKK 1530562871 ENCODE Processing Pipeline 9d9c71445610287d151745dc0a51aec3 https://www.encodeproject.org/files/ENCFF058TRN/@@download/ENCFF058TRN.bigWig GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF248NVZ bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF170UTG, ENCFF376TZA, ENCFF497AWS, ENCFF567KKK 7204346 ENCODE Processing Pipeline 026590bae28c7d084f64d7fac1fb4c4f https://www.encodeproject.org/files/ENCFF248NVZ/@@download/ENCFF248NVZ.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF551ACE bigBed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF248NVZ 12990814 ENCODE Processing Pipeline 4e229c4f31b535dd8cdf7a3dfe5b139f https://www.encodeproject.org/files/ENCFF551ACE/@@download/ENCFF551ACE.bigBed GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF807XMX bed narrowPeak optimal idr thresholded peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF248NVZ, ENCFF272FSQ, ENCFF419RSJ, ENCFF824JVH 146715 ENCODE Processing Pipeline 1b5468e4c4c969eb90471398d506a20f https://www.encodeproject.org/files/ENCFF807XMX/@@download/ENCFF807XMX.bed.gz GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF965LJP fastq reads ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF069MUW 2135578540 Michael Snyder, Stanford 094caeda3f69405cb9a13f72630574e2 SRA:SRR5112280 https://www.encodeproject.org/files/ENCFF965LJP/@@download/ENCFF965LJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF923CFU fastq reads ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF382DBU 2047598772 Michael Snyder, Stanford c2ee07943b0cf52b844d6a7b9829fb40 SRA:SRR5112279 https://www.encodeproject.org/files/ENCFF923CFU/@@download/ENCFF923CFU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF069MUW fastq reads ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF965LJP 2228505180 Michael Snyder, Stanford 54bf815982af210031c2f46353931555 SRA:SRR5112280 https://www.encodeproject.org/files/ENCFF069MUW/@@download/ENCFF069MUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF382DBU fastq reads ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF923CFU 2131916346 Michael Snyder, Stanford 79c2d0a0c90e136d97fed4f4ea1504e1 SRA:SRR5112279 https://www.encodeproject.org/files/ENCFF382DBU/@@download/ENCFF382DBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF893MCG bam unfiltered alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382DBU, ENCFF643CGH, ENCFF923CFU 4684307254 ENCODE Processing Pipeline a2542d46d319c044a754fac57ddabfd2 https://www.encodeproject.org/files/ENCFF893MCG/@@download/ENCFF893MCG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF374GED bam unfiltered alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382DBU, ENCFF807MUK, ENCFF923CFU 4680953997 ENCODE Processing Pipeline 46ba971e2437867c9aa131057c9f5ea2 https://www.encodeproject.org/files/ENCFF374GED/@@download/ENCFF374GED.bam hg19 released missing genetic modification characterization missing control alignments ENCFF156GIS bam unfiltered alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF069MUW, ENCFF643CGH, ENCFF965LJP 4877642191 ENCODE Processing Pipeline 7dd1318a1fe7257d1e02b6514646c702 https://www.encodeproject.org/files/ENCFF156GIS/@@download/ENCFF156GIS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF922ZEW bam unfiltered alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF069MUW, ENCFF807MUK, ENCFF965LJP 4874454733 ENCODE Processing Pipeline d26af1ce9340ee45296f499191ad8dd7 https://www.encodeproject.org/files/ENCFF922ZEW/@@download/ENCFF922ZEW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF730QBB bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382DBU, ENCFF643CGH, ENCFF923CFU 3818421174 ENCODE Processing Pipeline 671de85d653338959d61a53f546fe483 https://www.encodeproject.org/files/ENCFF730QBB/@@download/ENCFF730QBB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF021FPF bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF069MUW, ENCFF807MUK, ENCFF965LJP 3957269805 ENCODE Processing Pipeline ecd4c63785ae968017126b12012da3fb https://www.encodeproject.org/files/ENCFF021FPF/@@download/ENCFF021FPF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF902WES bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382DBU, ENCFF807MUK, ENCFF923CFU 3815643618 ENCODE Processing Pipeline c6eb5d57cf9134e56604bc6c259b61cb https://www.encodeproject.org/files/ENCFF902WES/@@download/ENCFF902WES.bam hg19 released missing genetic modification characterization missing control alignments ENCFF996RPG bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF069MUW, ENCFF643CGH, ENCFF965LJP 3960043704 ENCODE Processing Pipeline 1a6dfc87d6cbc2aa42621b7cd371b6cf https://www.encodeproject.org/files/ENCFF996RPG/@@download/ENCFF996RPG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF147PCD bigWig signal p-value ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF021FPF 1178006307 ENCODE Processing Pipeline 2214b751d3df5da2f0199c60466de085 https://www.encodeproject.org/files/ENCFF147PCD/@@download/ENCFF147PCD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF614JYW bigWig signal p-value ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF902WES 1424128862 ENCODE Processing Pipeline aa7083afc9f8a5cd7c890c1a85d9a8d1 https://www.encodeproject.org/files/ENCFF614JYW/@@download/ENCFF614JYW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF339OPP bigWig signal p-value ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF021FPF, ENCFF902WES 1811351716 ENCODE Processing Pipeline 747781e0634b750b0d643ae27848b4c5 https://www.encodeproject.org/files/ENCFF339OPP/@@download/ENCFF339OPP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF548RHD bigWig fold change over control ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF021FPF 1338695926 ENCODE Processing Pipeline 2d65ea5df3b698fe6a142a58aa80f52d https://www.encodeproject.org/files/ENCFF548RHD/@@download/ENCFF548RHD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF046PIM bigWig fold change over control ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF902WES 1312723677 ENCODE Processing Pipeline 3ed87d5b4aee18f3d9d9138a91a7e357 https://www.encodeproject.org/files/ENCFF046PIM/@@download/ENCFF046PIM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF135NEX bigWig fold change over control ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF021FPF, ENCFF902WES 1880980181 ENCODE Processing Pipeline ebb42ce6b93f1405bc46bec1ccc726fa https://www.encodeproject.org/files/ENCFF135NEX/@@download/ENCFF135NEX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF979TGX bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF021FPF 6741045 ENCODE Processing Pipeline 8ee09a7d0cfad15392562f07a51aad42 https://www.encodeproject.org/files/ENCFF979TGX/@@download/ENCFF979TGX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF748SDI bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF902WES 6479114 ENCODE Processing Pipeline 59323832a6d3b6bd7011bbb22ef9202c https://www.encodeproject.org/files/ENCFF748SDI/@@download/ENCFF748SDI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF152WTV bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF021FPF, ENCFF902WES 7122927 ENCODE Processing Pipeline 294b52d2071f2a76ab92ab438e3fcc48 https://www.encodeproject.org/files/ENCFF152WTV/@@download/ENCFF152WTV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF086HJA bigBed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF979TGX 11278372 ENCODE Processing Pipeline a67a65f84145823c9ad0c3be303ff4a0 https://www.encodeproject.org/files/ENCFF086HJA/@@download/ENCFF086HJA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF936ANT bigBed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF748SDI 11320085 ENCODE Processing Pipeline 62317c45d8f62db24a46551af34c4001 https://www.encodeproject.org/files/ENCFF936ANT/@@download/ENCFF936ANT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF665QZB bigBed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF152WTV 11105649 ENCODE Processing Pipeline 9e5668ffd895cee60ba2249818418d60 https://www.encodeproject.org/files/ENCFF665QZB/@@download/ENCFF665QZB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF252PVK bed narrowPeak conservative idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF152WTV, ENCFF748SDI, ENCFF979TGX 68001 ENCODE Processing Pipeline 7e707701b2c460be25dd8fe8eaba095d https://www.encodeproject.org/files/ENCFF252PVK/@@download/ENCFF252PVK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF512REE bigBed narrowPeak conservative idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF252PVK 163483 ENCODE Processing Pipeline 56eaf035476e7d81a5b30d5028e32fff https://www.encodeproject.org/files/ENCFF512REE/@@download/ENCFF512REE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF005XPI bed narrowPeak optimal idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF152WTV, ENCFF748SDI, ENCFF979TGX 104936 ENCODE Processing Pipeline 0ad3893b093d9684c7abab7dfde25102 https://www.encodeproject.org/files/ENCFF005XPI/@@download/ENCFF005XPI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF421EAW bigBed narrowPeak optimal idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF005XPI 255393 ENCODE Processing Pipeline ee2c41154b70e8d5f829fc1ee7fbd8c9 https://www.encodeproject.org/files/ENCFF421EAW/@@download/ENCFF421EAW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF855IYT bigWig signal p-value ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF996RPG 1387292138 ENCODE Processing Pipeline f71075c61fb819ec245fa006a1c4c962 https://www.encodeproject.org/files/ENCFF855IYT/@@download/ENCFF855IYT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF824YLJ bigWig signal p-value ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF730QBB 1164266031 ENCODE Processing Pipeline 3d413d1aabd89fbdff4716ad2033a4e9 https://www.encodeproject.org/files/ENCFF824YLJ/@@download/ENCFF824YLJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF130VRH bigWig signal p-value ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF730QBB, ENCFF996RPG 1549248409 ENCODE Processing Pipeline 83d58b3a14c1b690d99d365899a7b87b https://www.encodeproject.org/files/ENCFF130VRH/@@download/ENCFF130VRH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF535CXV bigWig fold change over control ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF996RPG 1299847591 ENCODE Processing Pipeline ebd0a9545d89919f688872fa5e21be86 https://www.encodeproject.org/files/ENCFF535CXV/@@download/ENCFF535CXV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF941YXK bigWig fold change over control ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF730QBB 1316555200 ENCODE Processing Pipeline f91fb3ae10a3884dbf0b031075e194db https://www.encodeproject.org/files/ENCFF941YXK/@@download/ENCFF941YXK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF123TCV bigWig fold change over control ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF730QBB, ENCFF996RPG 1884264482 ENCODE Processing Pipeline 9b8a51de5c21673bcf50e93513e6ae3b https://www.encodeproject.org/files/ENCFF123TCV/@@download/ENCFF123TCV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF209SYR bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF730QBB 6344247 ENCODE Processing Pipeline 11acfc8f9e3f93e33e24877735489980 https://www.encodeproject.org/files/ENCFF209SYR/@@download/ENCFF209SYR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF233JHC bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF996RPG 6602475 ENCODE Processing Pipeline ea88db9bee78073489f0dc0888518311 https://www.encodeproject.org/files/ENCFF233JHC/@@download/ENCFF233JHC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF879TAQ bigBed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF209SYR 11323134 ENCODE Processing Pipeline 34d89ec23c9f7c8aa6ea30dda8d1e48d https://www.encodeproject.org/files/ENCFF879TAQ/@@download/ENCFF879TAQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF274DYJ bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF730QBB, ENCFF996RPG 7070787 ENCODE Processing Pipeline e7a7d8302866da926d7f8e754261f6c6 https://www.encodeproject.org/files/ENCFF274DYJ/@@download/ENCFF274DYJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF595RJJ bigBed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF274DYJ 11114155 ENCODE Processing Pipeline df79de831340e12e6202530699920689 https://www.encodeproject.org/files/ENCFF595RJJ/@@download/ENCFF595RJJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF879QJW bigBed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF233JHC 11286176 ENCODE Processing Pipeline 81bc31c1afcb903aa1415797937918b4 https://www.encodeproject.org/files/ENCFF879QJW/@@download/ENCFF879QJW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF919XSX bigBed narrowPeak optimal idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF576BGV 201551 ENCODE Processing Pipeline 53d9c60c3a013c44147ea9ef2057f24f https://www.encodeproject.org/files/ENCFF919XSX/@@download/ENCFF919XSX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF682VTY bed narrowPeak conservative idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF209SYR, ENCFF233JHC, ENCFF274DYJ, ENCFF419RSJ 66363 ENCODE Processing Pipeline e755dd73fbd02c77b73b6f5c4cdac8a4 https://www.encodeproject.org/files/ENCFF682VTY/@@download/ENCFF682VTY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF576BGV bed narrowPeak optimal idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF209SYR, ENCFF233JHC, ENCFF274DYJ, ENCFF419RSJ 95681 ENCODE Processing Pipeline c0ab10aa6507ece39506a8ebee298a29 https://www.encodeproject.org/files/ENCFF576BGV/@@download/ENCFF576BGV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF456JWO bigBed narrowPeak conservative idr thresholded peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF682VTY 161960 ENCODE Processing Pipeline 2c26e063e4de8623e61d0bfc08d64ad2 https://www.encodeproject.org/files/ENCFF456JWO/@@download/ENCFF456JWO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF413XPW fastq reads ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF147RGY 2489804832 Michael Snyder, Stanford 4381a5e33844a1bcf47cba9d7593da43 SRA:SRR5112055 https://www.encodeproject.org/files/ENCFF413XPW/@@download/ENCFF413XPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF139YAL fastq reads ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF238JFX 2387495145 Michael Snyder, Stanford 49a66d680e3cd36851dcb395805d17ed SRA:SRR5112056 https://www.encodeproject.org/files/ENCFF139YAL/@@download/ENCFF139YAL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF238JFX fastq reads ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF139YAL 2461381097 Michael Snyder, Stanford 0658e6062b76fb7b37f607ae51930e5b SRA:SRR5112056 https://www.encodeproject.org/files/ENCFF238JFX/@@download/ENCFF238JFX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF147RGY fastq reads ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF413XPW 2593886033 Michael Snyder, Stanford 816287a9f27909c93f5c7939c1840d88 SRA:SRR5112055 https://www.encodeproject.org/files/ENCFF147RGY/@@download/ENCFF147RGY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF187HEV bam unfiltered alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147RGY, ENCFF413XPW, ENCFF807MUK 5426270504 ENCODE Processing Pipeline df46be82e78188815092ff3a7572e95a https://www.encodeproject.org/files/ENCFF187HEV/@@download/ENCFF187HEV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF398IYS bam unfiltered alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF139YAL, ENCFF238JFX, ENCFF643CGH 5324341457 ENCODE Processing Pipeline af759718aafb61301bb759c697579704 https://www.encodeproject.org/files/ENCFF398IYS/@@download/ENCFF398IYS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF130JTN bam unfiltered alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147RGY, ENCFF413XPW, ENCFF643CGH 5427915686 ENCODE Processing Pipeline 9bbc2ea5887d9c527453be2adfb2d772 https://www.encodeproject.org/files/ENCFF130JTN/@@download/ENCFF130JTN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF550DRG bam unfiltered alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF139YAL, ENCFF238JFX, ENCFF807MUK 5318622909 ENCODE Processing Pipeline 880542f1ca96482f596fe08ba381971b https://www.encodeproject.org/files/ENCFF550DRG/@@download/ENCFF550DRG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF125BUA bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147RGY, ENCFF413XPW, ENCFF807MUK 3913483807 ENCODE Processing Pipeline 0d0bf2349ec92f8ef6abd6419253b29f https://www.encodeproject.org/files/ENCFF125BUA/@@download/ENCFF125BUA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF377HHK bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF139YAL, ENCFF238JFX, ENCFF643CGH 4511449823 ENCODE Processing Pipeline 3c31225a5941fc176f37d5b0d4e99857 https://www.encodeproject.org/files/ENCFF377HHK/@@download/ENCFF377HHK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF542VGH bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147RGY, ENCFF413XPW, ENCFF643CGH 3915236882 ENCODE Processing Pipeline 52a23bb039a62f8bd24bf66778dee23d https://www.encodeproject.org/files/ENCFF542VGH/@@download/ENCFF542VGH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF573RBP bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF139YAL, ENCFF238JFX, ENCFF807MUK 4508377356 ENCODE Processing Pipeline 9b5fe2f22ad6ee3b692aeff9a5c5648f https://www.encodeproject.org/files/ENCFF573RBP/@@download/ENCFF573RBP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF614QBQ bigWig signal p-value ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF573RBP 1261701274 ENCODE Processing Pipeline 7215574f4579a0cceda3bbe40c48b1cb https://www.encodeproject.org/files/ENCFF614QBQ/@@download/ENCFF614QBQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF811YBI bigWig signal p-value ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF125BUA 1195783110 ENCODE Processing Pipeline 15d55ec32b0fb8339452000c6c446414 https://www.encodeproject.org/files/ENCFF811YBI/@@download/ENCFF811YBI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF199DVT bigWig signal p-value ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF125BUA, ENCFF573RBP 1858603329 ENCODE Processing Pipeline 6899f10ef8f55503a9589c70df6e3faa https://www.encodeproject.org/files/ENCFF199DVT/@@download/ENCFF199DVT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF777CJJ bigWig fold change over control ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF573RBP 1419258772 ENCODE Processing Pipeline b3a58c8b8626c64c337958c015bf9949 https://www.encodeproject.org/files/ENCFF777CJJ/@@download/ENCFF777CJJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF343FEQ bigWig fold change over control ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF125BUA 1263551486 ENCODE Processing Pipeline d290d2b346e9ebcd47c9a784cd7ecf00 https://www.encodeproject.org/files/ENCFF343FEQ/@@download/ENCFF343FEQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF994LGW bigWig fold change over control ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF125BUA, ENCFF573RBP 1935185718 ENCODE Processing Pipeline d3e321449ecc0604b8e3bcfc287b02d2 https://www.encodeproject.org/files/ENCFF994LGW/@@download/ENCFF994LGW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF917MIW bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF573RBP 7047873 ENCODE Processing Pipeline 49ed046b60103466b9ba278016a8900c https://www.encodeproject.org/files/ENCFF917MIW/@@download/ENCFF917MIW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF762SKC bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF125BUA 6522632 ENCODE Processing Pipeline 7aeea40d409261a3cb158127820a0060 https://www.encodeproject.org/files/ENCFF762SKC/@@download/ENCFF762SKC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF838EMX bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF125BUA, ENCFF573RBP 7220570 ENCODE Processing Pipeline f8675eb56714842a82029c9e1c84638a https://www.encodeproject.org/files/ENCFF838EMX/@@download/ENCFF838EMX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF238MES bigBed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF917MIW 13159984 ENCODE Processing Pipeline 93f0fc7665e731ef27e5c76818a95c79 https://www.encodeproject.org/files/ENCFF238MES/@@download/ENCFF238MES.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF243QED bigBed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF762SKC 11454783 ENCODE Processing Pipeline 1526e1f9bafecca2678038ae017419c3 https://www.encodeproject.org/files/ENCFF243QED/@@download/ENCFF243QED.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF737KOM bigBed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF838EMX 13180023 ENCODE Processing Pipeline 524339b695ada5022fafc832a0e14ac8 https://www.encodeproject.org/files/ENCFF737KOM/@@download/ENCFF737KOM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF383USV bed narrowPeak conservative idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF762SKC, ENCFF838EMX, ENCFF917MIW 527129 ENCODE Processing Pipeline 43939b5f0d72707ea8002ec37d83c06f https://www.encodeproject.org/files/ENCFF383USV/@@download/ENCFF383USV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF874PDY bigBed narrowPeak conservative idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF383USV 1238486 ENCODE Processing Pipeline 2644ecfd392c5fe323d837a0d5bb0c2d https://www.encodeproject.org/files/ENCFF874PDY/@@download/ENCFF874PDY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF057UHI bed narrowPeak optimal idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF762SKC, ENCFF838EMX, ENCFF917MIW 576408 ENCODE Processing Pipeline 537e0dcd597f1c885c77d76ed3d6b627 https://www.encodeproject.org/files/ENCFF057UHI/@@download/ENCFF057UHI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF991BKM bigBed narrowPeak optimal idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF057UHI 1341153 ENCODE Processing Pipeline 400c8f9debb22bdf02a95275433fee40 https://www.encodeproject.org/files/ENCFF991BKM/@@download/ENCFF991BKM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF419VYG bigWig signal p-value ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF377HHK 1378325779 ENCODE Processing Pipeline ab35645e273108c18971a067ad42f39b https://www.encodeproject.org/files/ENCFF419VYG/@@download/ENCFF419VYG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF996SEA bigWig signal p-value ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF542VGH 1165730689 ENCODE Processing Pipeline 6db2443b73c939a3589a81f654220da0 https://www.encodeproject.org/files/ENCFF996SEA/@@download/ENCFF996SEA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF902COL bigWig signal p-value ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF377HHK, ENCFF542VGH 1798507325 ENCODE Processing Pipeline 2e74cff7479defc6d4f87799b7414d06 https://www.encodeproject.org/files/ENCFF902COL/@@download/ENCFF902COL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF271PYJ bigWig fold change over control ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF377HHK 1415161513 ENCODE Processing Pipeline 9cfdcceb291775b06af7de674c2912cc https://www.encodeproject.org/files/ENCFF271PYJ/@@download/ENCFF271PYJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF990NNT bigWig fold change over control ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF542VGH 1264806405 ENCODE Processing Pipeline d017d5a9e4a41b5dd690baa729c89c7e https://www.encodeproject.org/files/ENCFF990NNT/@@download/ENCFF990NNT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF639MGL bigWig fold change over control ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF377HHK, ENCFF542VGH 1934685951 ENCODE Processing Pipeline 0bc02c91267f2abcbbf015da53e47a63 https://www.encodeproject.org/files/ENCFF639MGL/@@download/ENCFF639MGL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF653SGO bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF377HHK 7008310 ENCODE Processing Pipeline 1cc5faf12cc1623114c9299895f4c50c https://www.encodeproject.org/files/ENCFF653SGO/@@download/ENCFF653SGO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF314IDL bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF377HHK, ENCFF542VGH 7231746 ENCODE Processing Pipeline dc3be07c214aa7913beb031285856179 https://www.encodeproject.org/files/ENCFF314IDL/@@download/ENCFF314IDL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF083GCC bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF542VGH 6405480 ENCODE Processing Pipeline 7cfe57f809ba5f7d978c4e25d4e32f98 https://www.encodeproject.org/files/ENCFF083GCC/@@download/ENCFF083GCC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF295EBI bigBed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF653SGO 13201876 ENCODE Processing Pipeline 45baae61927182c0b4ecab2dcef7c6de https://www.encodeproject.org/files/ENCFF295EBI/@@download/ENCFF295EBI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF739IPT bigBed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF083GCC 11469937 ENCODE Processing Pipeline f884b03a297259f3691dc8aa2cd0d606 https://www.encodeproject.org/files/ENCFF739IPT/@@download/ENCFF739IPT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF991FFT bigBed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF314IDL 13206095 ENCODE Processing Pipeline 24b7e82932515e137e34b82323d461bc https://www.encodeproject.org/files/ENCFF991FFT/@@download/ENCFF991FFT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF375FSG bed narrowPeak conservative idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF083GCC, ENCFF314IDL, ENCFF419RSJ, ENCFF653SGO 539456 ENCODE Processing Pipeline 67bb1daafbc860649c279759beb20840 https://www.encodeproject.org/files/ENCFF375FSG/@@download/ENCFF375FSG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF566LJQ bigBed narrowPeak conservative idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF375FSG 1257119 ENCODE Processing Pipeline ed8437123a515411bddb56b154b5edee https://www.encodeproject.org/files/ENCFF566LJQ/@@download/ENCFF566LJQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF430BPF bigBed narrowPeak optimal idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF399DXM 1353943 ENCODE Processing Pipeline 9e4281c2c4bc834ebbdafa237c1ebd55 https://www.encodeproject.org/files/ENCFF430BPF/@@download/ENCFF430BPF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF399DXM bed narrowPeak optimal idr thresholded peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF083GCC, ENCFF314IDL, ENCFF419RSJ, ENCFF653SGO 585110 ENCODE Processing Pipeline bd6be305c97082816af54ba4345f861f https://www.encodeproject.org/files/ENCFF399DXM/@@download/ENCFF399DXM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF002ECY fastq reads ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 785413815 Michael Snyder, Stanford 470ed9d5386db86baab77e862a1e2baf SRA:SRR5111955 https://www.encodeproject.org/files/ENCFF002ECY/@@download/ENCFF002ECY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, low read depth ENCFF002EDA fastq reads ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 644174381 Michael Snyder, Stanford e6e3f8876a9ec3734bd9e5438220449b SRA:SRR5111954 https://www.encodeproject.org/files/ENCFF002EDA/@@download/ENCFF002EDA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, low read depth ENCFF573GQJ bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF807MUK 721756844 ENCODE Processing Pipeline ec60e61ed6eb416cc1af11832bc196db https://www.encodeproject.org/files/ENCFF573GQJ/@@download/ENCFF573GQJ.bam hg19 released low read length, low read depth ENCFF707LIB bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF807MUK 570933506 ENCODE Processing Pipeline 77aa19a4f0d5db98b70b971c47e7268d https://www.encodeproject.org/files/ENCFF707LIB/@@download/ENCFF707LIB.bam hg19 released low read length, low read depth ENCFF661MKA bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 475018240 ENCODE Processing Pipeline a3cc4a9a8dffb58de187074a46abc517 https://www.encodeproject.org/files/ENCFF661MKA/@@download/ENCFF661MKA.bigWig hg19 released low read length, low read depth ENCFF957AZE bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 577951214 ENCODE Processing Pipeline 07ef2f45b9197207f07766dc49f6fad0 https://www.encodeproject.org/files/ENCFF957AZE/@@download/ENCFF957AZE.bigWig hg19 released low read length, low read depth ENCFF683FLJ bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 385106198 ENCODE Processing Pipeline 80d05c066352fda5f3e2435aea22fe7e https://www.encodeproject.org/files/ENCFF683FLJ/@@download/ENCFF683FLJ.bigWig hg19 released low read length, low read depth ENCFF148PWG bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 356886688 ENCODE Processing Pipeline b3cca58749eac3db33dce8bd104dfec4 https://www.encodeproject.org/files/ENCFF148PWG/@@download/ENCFF148PWG.bigWig hg19 released low read length, low read depth ENCFF810XMW bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF643CGH 823096242 ENCODE Processing Pipeline 1f34b9f83fc2b6b5323552adaf007e4a https://www.encodeproject.org/files/ENCFF810XMW/@@download/ENCFF810XMW.bam GRCh38 released low read length, low read depth ENCFF323BGI bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF643CGH 998217303 ENCODE Processing Pipeline 555743f6ed04bf1b530779eb569fcbdf https://www.encodeproject.org/files/ENCFF323BGI/@@download/ENCFF323BGI.bam GRCh38 released low read length, low read depth ENCFF462BSP bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF643CGH 571228033 ENCODE Processing Pipeline 5e19928823a8bcc9702e3a35291c1de7 https://www.encodeproject.org/files/ENCFF462BSP/@@download/ENCFF462BSP.bam GRCh38 released low read length, low read depth ENCFF787QFQ bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF643CGH 722146162 ENCODE Processing Pipeline 5824fb2f0f2085247f027ce8a4016e4f https://www.encodeproject.org/files/ENCFF787QFQ/@@download/ENCFF787QFQ.bam GRCh38 released low read length, low read depth ENCFF140GTD bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF787QFQ, ENCFF872ERZ 513321138 ENCODE Processing Pipeline 2967c435208acb36decfe3f49151ddb9 https://www.encodeproject.org/files/ENCFF140GTD/@@download/ENCFF140GTD.bigWig GRCh38 released low read length, low read depth ENCFF290PXX bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF462BSP 506206389 ENCODE Processing Pipeline c4f670686d57fedcd257304f1efbef4a https://www.encodeproject.org/files/ENCFF290PXX/@@download/ENCFF290PXX.bigWig GRCh38 released low read length, low read depth ENCFF326HWU bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF462BSP, ENCFF787QFQ, ENCFF872ERZ 928438990 ENCODE Processing Pipeline 5b6ccc03e06e94769a39e98c6e83db8c https://www.encodeproject.org/files/ENCFF326HWU/@@download/ENCFF326HWU.bigWig GRCh38 released low read length, low read depth ENCFF729CXV bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF787QFQ, ENCFF872ERZ 387511387 ENCODE Processing Pipeline 3c11d411793fa21febdab25b894d8ffa https://www.encodeproject.org/files/ENCFF729CXV/@@download/ENCFF729CXV.bigWig GRCh38 released low read length, low read depth ENCFF818PLM bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF462BSP 357424470 ENCODE Processing Pipeline a2da880d2bf9d9e2d83d1c296bf526b5 https://www.encodeproject.org/files/ENCFF818PLM/@@download/ENCFF818PLM.bigWig GRCh38 released low read length, low read depth ENCFF586FDC bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF462BSP, ENCFF787QFQ, ENCFF872ERZ 832133480 ENCODE Processing Pipeline dc18e065e01eab072216b4dbaef01358 https://www.encodeproject.org/files/ENCFF586FDC/@@download/ENCFF586FDC.bigWig GRCh38 released low read length, low read depth ENCFF340NHS bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF787QFQ, ENCFF872ERZ 3966516 ENCODE Processing Pipeline 8130e1d65d057d777601f7c9ee65aba3 https://www.encodeproject.org/files/ENCFF340NHS/@@download/ENCFF340NHS.bed.gz GRCh38 released low read length, low read depth ENCFF931IOD bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF340NHS 10626532 ENCODE Processing Pipeline 7395edbb40767993c6bff0dda1c3f2f5 https://www.encodeproject.org/files/ENCFF931IOD/@@download/ENCFF931IOD.bigBed GRCh38 released low read length, low read depth ENCFF972TIP bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF899LRY 10572546 ENCODE Processing Pipeline 4f4e9c449ecb09510916c7161255ae25 https://www.encodeproject.org/files/ENCFF972TIP/@@download/ENCFF972TIP.bigBed GRCh38 released low read length, low read depth ENCFF899LRY bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF272DEZ, ENCFF462BSP 4127250 ENCODE Processing Pipeline b8a4b1dcb633b314d35aab5eb9d82761 https://www.encodeproject.org/files/ENCFF899LRY/@@download/ENCFF899LRY.bed.gz GRCh38 released low read length, low read depth ENCFF570ZOZ bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF669IHV 11542436 ENCODE Processing Pipeline 2dc9755bf17cc6e46a14e1218f15e0bc https://www.encodeproject.org/files/ENCFF570ZOZ/@@download/ENCFF570ZOZ.bigBed GRCh38 released low read length, low read depth ENCFF334NEC bigBed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF736WUM 86325 ENCODE Processing Pipeline 4bae6f5b2ee00d38007b9bf163312abb https://www.encodeproject.org/files/ENCFF334NEC/@@download/ENCFF334NEC.bigBed GRCh38 released low read length, low read depth ENCFF669IHV bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272DEZ, ENCFF462BSP, ENCFF787QFQ, ENCFF872ERZ 5134208 ENCODE Processing Pipeline 8dc4a0593a8386cadb72d3d34b7fe61c https://www.encodeproject.org/files/ENCFF669IHV/@@download/ENCFF669IHV.bed.gz GRCh38 released low read length, low read depth ENCFF736WUM bed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF340NHS, ENCFF419RSJ, ENCFF669IHV, ENCFF899LRY 24735 ENCODE Processing Pipeline 18dca7bd536ddcb286143c1b2fb7ea99 https://www.encodeproject.org/files/ENCFF736WUM/@@download/ENCFF736WUM.bed.gz GRCh38 released low read length, low read depth ENCFF506QAO bigBed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF786YYI 111164 ENCODE Processing Pipeline 151ef864fb672b0acff73cef6b4df7e7 https://www.encodeproject.org/files/ENCFF506QAO/@@download/ENCFF506QAO.bigBed GRCh38 released low read length, low read depth ENCFF786YYI bed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF340NHS, ENCFF419RSJ, ENCFF669IHV, ENCFF899LRY 43696 ENCODE Processing Pipeline ea9c25533ae0e7656574a3e8437fd3a3 https://www.encodeproject.org/files/ENCFF786YYI/@@download/ENCFF786YYI.bed.gz GRCh38 released low read length, low read depth ENCFF523VUD bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF807MUK 818834430 ENCODE Processing Pipeline bf728ed652f8d1c38d465228f5fabc40 https://www.encodeproject.org/files/ENCFF523VUD/@@download/ENCFF523VUD.bam hg19 released low read length, low read depth ENCFF403OCE bam unfiltered alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF807MUK 993587786 ENCODE Processing Pipeline 307b70c657cedef4eb3c1347e855c2dd https://www.encodeproject.org/files/ENCFF403OCE/@@download/ENCFF403OCE.bam hg19 released low read length, low read depth ENCFF488BKD bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF284OML 10693493 ENCODE Processing Pipeline 3a7c57da45efde5187e72e60e14c9903 https://www.encodeproject.org/files/ENCFF488BKD/@@download/ENCFF488BKD.bigBed hg19 released low read length, low read depth ENCFF761MGJ bed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF017STY, ENCFF284OML, ENCFF300RLB 41700 ENCODE Processing Pipeline 380214c27906f67ff28dec054d68900a https://www.encodeproject.org/files/ENCFF761MGJ/@@download/ENCFF761MGJ.bed.gz hg19 released low read length, low read depth ENCFF481MMI bigWig fold change over control ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF426WJH, ENCFF573GQJ, ENCFF707LIB, ENCFF849LYY 830418563 ENCODE Processing Pipeline c9acd4184a060b16a00276e351db4aaf https://www.encodeproject.org/files/ENCFF481MMI/@@download/ENCFF481MMI.bigWig hg19 released low read length, low read depth ENCFF985OOR bigWig signal p-value ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF426WJH, ENCFF573GQJ, ENCFF707LIB, ENCFF849LYY 929024662 ENCODE Processing Pipeline d1f003e49906debcc4c57e552cf4bbd1 https://www.encodeproject.org/files/ENCFF985OOR/@@download/ENCFF985OOR.bigWig hg19 released low read length, low read depth ENCFF300RLB bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 3989931 ENCODE Processing Pipeline 63a953c29fe9ecd800a8669dbce70dc2 https://www.encodeproject.org/files/ENCFF300RLB/@@download/ENCFF300RLB.bed.gz hg19 released low read length, low read depth ENCFF284OML bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 4163465 ENCODE Processing Pipeline 16f46cbe832639a29f8cd0e8298c06a5 https://www.encodeproject.org/files/ENCFF284OML/@@download/ENCFF284OML.bed.gz hg19 released low read length, low read depth ENCFF776SJV bigBed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF701HMB 85290 ENCODE Processing Pipeline b8893e4a3dd52133670ef5cdaee31835 https://www.encodeproject.org/files/ENCFF776SJV/@@download/ENCFF776SJV.bigBed hg19 released low read length, low read depth ENCFF713GIT bigBed narrowPeak optimal idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF761MGJ 108048 ENCODE Processing Pipeline 8961912a122f57eac9d02f577142abf6 https://www.encodeproject.org/files/ENCFF713GIT/@@download/ENCFF713GIT.bigBed hg19 released low read length, low read depth ENCFF017STY bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF426WJH, ENCFF573GQJ, ENCFF707LIB, ENCFF849LYY 5162479 ENCODE Processing Pipeline 3cb6019de1360b67e5b77a4f8af64464 https://www.encodeproject.org/files/ENCFF017STY/@@download/ENCFF017STY.bed.gz hg19 released low read length, low read depth ENCFF943SYZ bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF300RLB 10602972 ENCODE Processing Pipeline e3a8b32227bebebe88d1b17141d5c54b https://www.encodeproject.org/files/ENCFF943SYZ/@@download/ENCFF943SYZ.bigBed hg19 released low read length, low read depth ENCFF701HMB bed narrowPeak conservative idr thresholded peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF017STY, ENCFF284OML, ENCFF300RLB 24646 ENCODE Processing Pipeline 6adf828cfedc2895068a98b7807ac904 https://www.encodeproject.org/files/ENCFF701HMB/@@download/ENCFF701HMB.bed.gz hg19 released low read length, low read depth ENCFF755YYI bigBed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF017STY 11527071 ENCODE Processing Pipeline 3a2d24dc5daaed79efd76e1d58417659 https://www.encodeproject.org/files/ENCFF755YYI/@@download/ENCFF755YYI.bigBed hg19 released low read length, low read depth ENCFF017HJV fastq reads ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 399762768 Xiang-Dong Fu, UCSD 9ffbf148e4b6daa3489aca0af4417326 https://www.encodeproject.org/files/ENCFF017HJV/@@download/ENCFF017HJV.fastq.gz Illumina HiSeq 2000 /files/ENCFF343MYT/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF941PUJ fastq reads ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 390864479 Xiang-Dong Fu, UCSD c2c2506419743666df8c338ddf5f9e34 https://www.encodeproject.org/files/ENCFF941PUJ/@@download/ENCFF941PUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF521UDO/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF891ODG fastq reads ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 1304137662 Xiang-Dong Fu, UCSD 79b42c2641db8740253271522caf1cd9 https://www.encodeproject.org/files/ENCFF891ODG/@@download/ENCFF891ODG.fastq.gz Illumina HiSeq 2500 /files/ENCFF521UDO/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF575ZZC fastq reads ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 882572168 Xiang-Dong Fu, UCSD 1de92c200071ed8aa31bd223a394f429 https://www.encodeproject.org/files/ENCFF575ZZC/@@download/ENCFF575ZZC.fastq.gz Illumina HiSeq 2500 /files/ENCFF343MYT/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF048FZJ bam unfiltered alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF017HJV, ENCFF575ZZC, ENCFF807MUK 1305373580 ENCODE Processing Pipeline 1cd6de93db785799d7dd8329cf814987 https://www.encodeproject.org/files/ENCFF048FZJ/@@download/ENCFF048FZJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF701MHQ bam unfiltered alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF017HJV, ENCFF575ZZC, ENCFF643CGH 1311330453 ENCODE Processing Pipeline fa9f11ba092177b51835c9fff78696a7 https://www.encodeproject.org/files/ENCFF701MHQ/@@download/ENCFF701MHQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF922DRF bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF017HJV, ENCFF575ZZC, ENCFF643CGH 449587093 ENCODE Processing Pipeline ac415eff7a1918b44ef4440f810e0713 https://www.encodeproject.org/files/ENCFF922DRF/@@download/ENCFF922DRF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF044MLU bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF017HJV, ENCFF575ZZC, ENCFF807MUK 450248431 ENCODE Processing Pipeline 03a0b51540cb6dc793ca77ec01910509 https://www.encodeproject.org/files/ENCFF044MLU/@@download/ENCFF044MLU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF353XLY bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF891ODG, ENCFF941PUJ 410591625 ENCODE Processing Pipeline 1246520b65a0c66e92f2e1f7ff3e77cb https://www.encodeproject.org/files/ENCFF353XLY/@@download/ENCFF353XLY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF978UGE bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF643CGH, ENCFF891ODG, ENCFF941PUJ 409970317 ENCODE Processing Pipeline 04f099e9cf78d24173e08dfa6357e44c https://www.encodeproject.org/files/ENCFF978UGE/@@download/ENCFF978UGE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF451DOD bam unfiltered alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF891ODG, ENCFF941PUJ 1696276346 ENCODE Processing Pipeline 114762e12b0c981c5ce4bcf19fa9a79d https://www.encodeproject.org/files/ENCFF451DOD/@@download/ENCFF451DOD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF961LDM bam unfiltered alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF643CGH, ENCFF891ODG, ENCFF941PUJ 1703401509 ENCODE Processing Pipeline a9f0dd466bdd7fc40de8abc3400e69d6 https://www.encodeproject.org/files/ENCFF961LDM/@@download/ENCFF961LDM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF087KCE bigWig signal p-value ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF584ERB, ENCFF922DRF 505048176 ENCODE Processing Pipeline d0b27c8b1c858dfe9838639a734d1732 https://www.encodeproject.org/files/ENCFF087KCE/@@download/ENCFF087KCE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF487RXG bigWig fold change over control ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF092OLM, ENCFF584ERB, ENCFF922DRF, ENCFF978UGE 735137736 ENCODE Processing Pipeline 2e9bcd6fef36f0a8af9fcf5d0fdae74a https://www.encodeproject.org/files/ENCFF487RXG/@@download/ENCFF487RXG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF983IEF bigBed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF174VAD 13133717 ENCODE Processing Pipeline a556e036e00845e70addba142c0caca4 https://www.encodeproject.org/files/ENCFF983IEF/@@download/ENCFF983IEF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF306IYE bigBed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF007SLK 13005010 ENCODE Processing Pipeline 03e975d164fc32b7abc3339c4cbaded5 https://www.encodeproject.org/files/ENCFF306IYE/@@download/ENCFF306IYE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF007SLK bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF584ERB, ENCFF922DRF 5575079 ENCODE Processing Pipeline f5046db35b5a59e28eb928d9a692091a https://www.encodeproject.org/files/ENCFF007SLK/@@download/ENCFF007SLK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF160QWL bed narrowPeak conservative idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF007SLK, ENCFF174VAD, ENCFF220GUZ, ENCFF419RSJ 246483 ENCODE Processing Pipeline 64c8530bbe6649f80bf7dd2e6bd74586 https://www.encodeproject.org/files/ENCFF160QWL/@@download/ENCFF160QWL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF220GUZ bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF092OLM, ENCFF584ERB, ENCFF922DRF, ENCFF978UGE 6578278 ENCODE Processing Pipeline ea15993e95bc523f3621dd1c149ed704 https://www.encodeproject.org/files/ENCFF220GUZ/@@download/ENCFF220GUZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF843UHP bed narrowPeak optimal idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF007SLK, ENCFF174VAD, ENCFF220GUZ, ENCFF419RSJ 269256 ENCODE Processing Pipeline e1965b4b42bacc9d61965c3981c66dc1 https://www.encodeproject.org/files/ENCFF843UHP/@@download/ENCFF843UHP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF095CXR bigWig signal p-value ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF092OLM, ENCFF978UGE 500223994 ENCODE Processing Pipeline d7c2c8a0ec411d17e5e5d69a9ba2363f https://www.encodeproject.org/files/ENCFF095CXR/@@download/ENCFF095CXR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF568WKA bigWig fold change over control ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF092OLM, ENCFF978UGE 308144369 ENCODE Processing Pipeline ee94d014f50b2edaf3496276ff4a896d https://www.encodeproject.org/files/ENCFF568WKA/@@download/ENCFF568WKA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF956OKI bigWig fold change over control ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF584ERB, ENCFF922DRF 334215781 ENCODE Processing Pipeline c8a7fdd399dc6bbfd5550731644039fd https://www.encodeproject.org/files/ENCFF956OKI/@@download/ENCFF956OKI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF722UZR bigBed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF220GUZ 13210341 ENCODE Processing Pipeline e5e5ad47d08a3d86616b4290ca754a7c https://www.encodeproject.org/files/ENCFF722UZR/@@download/ENCFF722UZR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF560EAV bigWig signal p-value ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF092OLM, ENCFF584ERB, ENCFF922DRF, ENCFF978UGE 916619198 ENCODE Processing Pipeline 3f99fdf898a746d156b31c231b5b71b7 https://www.encodeproject.org/files/ENCFF560EAV/@@download/ENCFF560EAV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF174VAD bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF092OLM, ENCFF978UGE 5389690 ENCODE Processing Pipeline 84b89e366aa45f7b68aa6d041cf2163b https://www.encodeproject.org/files/ENCFF174VAD/@@download/ENCFF174VAD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF349KZR bigBed narrowPeak conservative idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF160QWL 554192 ENCODE Processing Pipeline cc1f7840b8386b8b8b5192f919487972 https://www.encodeproject.org/files/ENCFF349KZR/@@download/ENCFF349KZR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF501ZHS bigBed narrowPeak optimal idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF843UHP 587863 ENCODE Processing Pipeline 9158934aadb43465961782745c4334cf https://www.encodeproject.org/files/ENCFF501ZHS/@@download/ENCFF501ZHS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF170CBW bigWig signal p-value ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF177GKX, ENCFF353XLY 444662061 ENCODE Processing Pipeline c73199d45265dba2d8313433919f6b5e https://www.encodeproject.org/files/ENCFF170CBW/@@download/ENCFF170CBW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF736OTF bigWig fold change over control ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF177GKX, ENCFF353XLY 306332169 ENCODE Processing Pipeline c82f89aef919aee5c8cff54ffe731670 https://www.encodeproject.org/files/ENCFF736OTF/@@download/ENCFF736OTF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF637QZJ bigWig signal p-value ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF044MLU, ENCFF993VCM 576672016 ENCODE Processing Pipeline ffc3ef581b9723b2c07fd084abc4d008 https://www.encodeproject.org/files/ENCFF637QZJ/@@download/ENCFF637QZJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF688VZP bigWig signal p-value ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF044MLU, ENCFF177GKX, ENCFF353XLY, ENCFF993VCM 1017162184 ENCODE Processing Pipeline 9baeb1dc85aa4c070320546ac14da546 https://www.encodeproject.org/files/ENCFF688VZP/@@download/ENCFF688VZP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF583UDD bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF044MLU, ENCFF993VCM 5297343 ENCODE Processing Pipeline 700e439b8337491909faa99b1dd3e5b8 https://www.encodeproject.org/files/ENCFF583UDD/@@download/ENCFF583UDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF084UEX bigBed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF583UDD 12875716 ENCODE Processing Pipeline 5d749147ba3a49a632a43de602d5fbdd https://www.encodeproject.org/files/ENCFF084UEX/@@download/ENCFF084UEX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF951FOV bigWig fold change over control ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF044MLU, ENCFF177GKX, ENCFF353XLY, ENCFF993VCM 757132677 ENCODE Processing Pipeline 18f7a26adfb923ff8fa77b9a07bdebd1 https://www.encodeproject.org/files/ENCFF951FOV/@@download/ENCFF951FOV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF498CHM bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF177GKX, ENCFF353XLY 5439400 ENCODE Processing Pipeline 7acb46a171c05b14d2af9387c81421f3 https://www.encodeproject.org/files/ENCFF498CHM/@@download/ENCFF498CHM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF559OHC bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF044MLU, ENCFF177GKX, ENCFF353XLY, ENCFF993VCM 6599389 ENCODE Processing Pipeline 25f3a8e6c39016bd831ba22cb3d044e1 https://www.encodeproject.org/files/ENCFF559OHC/@@download/ENCFF559OHC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF801REC bigBed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF498CHM 13115789 ENCODE Processing Pipeline 0f3a9e08d507a138c0fd94dea19e0dad https://www.encodeproject.org/files/ENCFF801REC/@@download/ENCFF801REC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF810LZY bigBed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF559OHC 13174285 ENCODE Processing Pipeline 137f8bcf700c6956aca9045af44fe45f https://www.encodeproject.org/files/ENCFF810LZY/@@download/ENCFF810LZY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF449AHL bed narrowPeak conservative idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF498CHM, ENCFF559OHC, ENCFF583UDD 246575 ENCODE Processing Pipeline cc2c9e746cfd1c45f55cd712de9c7bd9 https://www.encodeproject.org/files/ENCFF449AHL/@@download/ENCFF449AHL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF246VJH bed narrowPeak optimal idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF498CHM, ENCFF559OHC, ENCFF583UDD 263665 ENCODE Processing Pipeline 73c53958a16e09e0c2ba93843f2da5c4 https://www.encodeproject.org/files/ENCFF246VJH/@@download/ENCFF246VJH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF452LYW bigBed narrowPeak optimal idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF246VJH 577176 ENCODE Processing Pipeline bead8e2c9ff3c65d5094057a1830f37e https://www.encodeproject.org/files/ENCFF452LYW/@@download/ENCFF452LYW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF728FXU bigWig fold change over control ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF044MLU, ENCFF993VCM 325702778 ENCODE Processing Pipeline 77f49b69772c16728633dac0ebc2c8be https://www.encodeproject.org/files/ENCFF728FXU/@@download/ENCFF728FXU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF236WUX bigBed narrowPeak conservative idr thresholded peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF449AHL 550042 ENCODE Processing Pipeline 126b005a0906dcda8d6a02f992861dee https://www.encodeproject.org/files/ENCFF236WUX/@@download/ENCFF236WUX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF441MWI fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 1 101 paired-ended 2 ENCFF212KHQ 4226377854 Michael Snyder, Stanford cebcb895cfe0e86b82ffe1a9e64010bc SRA:SRR6214382 https://www.encodeproject.org/files/ENCFF441MWI/@@download/ENCFF441MWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF670NUT bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF750OED, ENCFF941TZZ 1327195663 ENCODE Processing Pipeline 4a61f85bb78e3b9ac94a86e7c1d47749 https://www.encodeproject.org/files/ENCFF670NUT/@@download/ENCFF670NUT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF981FOD bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF750OED, ENCFF941TZZ 1280304414 ENCODE Processing Pipeline d325f78df266a2c27a1e4740aba49966 https://www.encodeproject.org/files/ENCFF981FOD/@@download/ENCFF981FOD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF002ELC fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EKY 2540683078 Michael Snyder, Stanford 1882eefc2da684f4e1ea638b40304229 SRA:SRR6214383 https://www.encodeproject.org/files/ENCFF002ELC/@@download/ENCFF002ELC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF002EKY fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 1 100 paired-ended 2 ENCFF002ELC 2534760216 Michael Snyder, Stanford b574002e1edac78bdbf66a6b8eead62a SRA:SRR6214383 https://www.encodeproject.org/files/ENCFF002EKY/@@download/ENCFF002EKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF212KHQ fastq reads ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 1 101 paired-ended 1 ENCFF441MWI 4243944032 Michael Snyder, Stanford 667cbfe76ad9534b410e934334d89302 SRA:SRR6214382 https://www.encodeproject.org/files/ENCFF212KHQ/@@download/ENCFF212KHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF264CPI bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF643CGH 7970879019 ENCODE Processing Pipeline cc6347392cb17aac04645cf71b865ac1 https://www.encodeproject.org/files/ENCFF264CPI/@@download/ENCFF264CPI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF783MVK bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF643CGH 5535020259 ENCODE Processing Pipeline 9d5f5c0ea7de82c340debee84bcc1d47 https://www.encodeproject.org/files/ENCFF783MVK/@@download/ENCFF783MVK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF948HZE bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF643CGH 4514260906 ENCODE Processing Pipeline 6cb72b6016d7d982384f673dc48d4143 https://www.encodeproject.org/files/ENCFF948HZE/@@download/ENCFF948HZE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF888KPM bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF643CGH 6371525075 ENCODE Processing Pipeline e1cc41ab0edf0a0561070241c9a32b3d https://www.encodeproject.org/files/ENCFF888KPM/@@download/ENCFF888KPM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF470PZL bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF807MUK 7967069173 ENCODE Processing Pipeline cb219fa4a738d8d1aa6cc90989f487dc https://www.encodeproject.org/files/ENCFF470PZL/@@download/ENCFF470PZL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF831TJK bam unfiltered alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF807MUK 5533095001 ENCODE Processing Pipeline 085f9d15e2bfb0313d22c89e764090f9 https://www.encodeproject.org/files/ENCFF831TJK/@@download/ENCFF831TJK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF750OED bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF807MUK 4498058693 ENCODE Processing Pipeline db12297dbdb73737b404efbbfed07062 https://www.encodeproject.org/files/ENCFF750OED/@@download/ENCFF750OED.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF963AMS bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF807MUK 6364770670 ENCODE Processing Pipeline 4ee72f4e128b61c0ee1d3803dabf54c3 https://www.encodeproject.org/files/ENCFF963AMS/@@download/ENCFF963AMS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF936FBJ bed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF287SKW, ENCFF941TZZ, ENCFF963AMS 7020973 ENCODE Processing Pipeline 8d9afc4352dcd6f2d43d5069a8180764 https://www.encodeproject.org/files/ENCFF936FBJ/@@download/ENCFF936FBJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF897DBV bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF936FBJ 13298787 ENCODE Processing Pipeline 3c02675c14e1037a0b00b88edc2202f8 https://www.encodeproject.org/files/ENCFF897DBV/@@download/ENCFF897DBV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF838XPB bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF683IDH 13359120 ENCODE Processing Pipeline b9887ac61f7b1eef0a928d32ba47efc5 https://www.encodeproject.org/files/ENCFF838XPB/@@download/ENCFF838XPB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF034OSV bed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF218UGC, ENCFF361KFY, ENCFF419RSJ, ENCFF683IDH 366232 ENCODE Processing Pipeline 3154e6dbd048446b9a6f28cf7d56dca6 https://www.encodeproject.org/files/ENCFF034OSV/@@download/ENCFF034OSV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF452IKX bed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF750OED, ENCFF941TZZ 6292856 ENCODE Processing Pipeline e087f7653bfb7dfad4d5c46fbce23fc5 https://www.encodeproject.org/files/ENCFF452IKX/@@download/ENCFF452IKX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593XIS bed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF001TDO, ENCFF436OTJ, ENCFF452IKX, ENCFF936FBJ 190017 ENCODE Processing Pipeline 92570a1e7f98c2d607474726346a0cde https://www.encodeproject.org/files/ENCFF593XIS/@@download/ENCFF593XIS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF942SCN bigBed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF593XIS 458738 ENCODE Processing Pipeline 664c392c664be71756cc4e6e956e69e3 https://www.encodeproject.org/files/ENCFF942SCN/@@download/ENCFF942SCN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF601XVA bed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF001TDO, ENCFF436OTJ, ENCFF452IKX, ENCFF936FBJ 363397 ENCODE Processing Pipeline 04fd5d92531b46908c2f3bf60b199d9a https://www.encodeproject.org/files/ENCFF601XVA/@@download/ENCFF601XVA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF408DUR bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF879YMO, ENCFF948HZE 1286066206 ENCODE Processing Pipeline 689f2f0e098e24f3268ca86f6e0ed3b7 https://www.encodeproject.org/files/ENCFF408DUR/@@download/ENCFF408DUR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF845OZT bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM 1897444575 ENCODE Processing Pipeline 8c5adfae83ec9a1415cbae8d4275c708 https://www.encodeproject.org/files/ENCFF845OZT/@@download/ENCFF845OZT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF218UGC bed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM, ENCFF948HZE 7263147 ENCODE Processing Pipeline 3f0d14778c058bb2a72881f3d74f0b57 https://www.encodeproject.org/files/ENCFF218UGC/@@download/ENCFF218UGC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF045NMS bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF287SKW, ENCFF941TZZ, ENCFF963AMS 1824419241 ENCODE Processing Pipeline cf8030be08c12b8626bc358683735cda https://www.encodeproject.org/files/ENCFF045NMS/@@download/ENCFF045NMS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF101QLW bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF287SKW, ENCFF750OED, ENCFF941TZZ, ENCFF963AMS 2063859283 ENCODE Processing Pipeline 8f5191578e32250859f982d34e0f2759 https://www.encodeproject.org/files/ENCFF101QLW/@@download/ENCFF101QLW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF867SNZ bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF287SKW, ENCFF941TZZ, ENCFF963AMS 1939019344 ENCODE Processing Pipeline ea5a8c1ae59384cfc86da7a66af8c876 https://www.encodeproject.org/files/ENCFF867SNZ/@@download/ENCFF867SNZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF487HQU bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF287SKW, ENCFF750OED, ENCFF941TZZ, ENCFF963AMS 2397303644 ENCODE Processing Pipeline 3036d06509aa329a1f3bfb0deef6fefc https://www.encodeproject.org/files/ENCFF487HQU/@@download/ENCFF487HQU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF436OTJ bed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF287SKW, ENCFF750OED, ENCFF941TZZ, ENCFF963AMS 7256723 ENCODE Processing Pipeline 9de1f75678c2a35eaeb453874ead220d https://www.encodeproject.org/files/ENCFF436OTJ/@@download/ENCFF436OTJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF753SOI bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF452IKX 13354759 ENCODE Processing Pipeline ce2a23a6bf3ce36b40869f1edb5e046d https://www.encodeproject.org/files/ENCFF753SOI/@@download/ENCFF753SOI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF234BHC bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF436OTJ 13217182 ENCODE Processing Pipeline 37d574002f99c0c401552ffdbc8e8adc https://www.encodeproject.org/files/ENCFF234BHC/@@download/ENCFF234BHC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF372WMI bigBed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF601XVA 753897 ENCODE Processing Pipeline 8a8bf5b75a2b05ca157d05c429b39b5f https://www.encodeproject.org/files/ENCFF372WMI/@@download/ENCFF372WMI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF228WPE bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF879YMO, ENCFF948HZE 1207281775 ENCODE Processing Pipeline 289554635577f6f83648db21c73c4e55 https://www.encodeproject.org/files/ENCFF228WPE/@@download/ENCFF228WPE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF545CFR bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM 1875156970 ENCODE Processing Pipeline 3fc2bea42e1b4f872acb82e4f1603c79 https://www.encodeproject.org/files/ENCFF545CFR/@@download/ENCFF545CFR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF422OFG bigWig signal p-value ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM, ENCFF948HZE 2256484233 ENCODE Processing Pipeline 6c00437cbac2045404f083a2fee849e7 https://www.encodeproject.org/files/ENCFF422OFG/@@download/ENCFF422OFG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF609ZOH bigWig fold change over control ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM, ENCFF948HZE 2393755573 ENCODE Processing Pipeline 031bd0ea3e7ac80627f645243c0f23f7 https://www.encodeproject.org/files/ENCFF609ZOH/@@download/ENCFF609ZOH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF683IDH bed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF879YMO, ENCFF948HZE 6288901 ENCODE Processing Pipeline 6d524249fb903b98b108ebe14ef70e8d https://www.encodeproject.org/files/ENCFF683IDH/@@download/ENCFF683IDH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF361KFY bed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF574BGV, ENCFF879YMO, ENCFF888KPM 7006746 ENCODE Processing Pipeline 91df60bc3cd3b0f0b52121b26d86b1db https://www.encodeproject.org/files/ENCFF361KFY/@@download/ENCFF361KFY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF795OKJ bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 ENCFF361KFY 13293359 ENCODE Processing Pipeline 225aca853f7163cbdab8be61aa9ff48f https://www.encodeproject.org/files/ENCFF795OKJ/@@download/ENCFF795OKJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF409JWS bigBed narrowPeak peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF218UGC 13223721 ENCODE Processing Pipeline b2eb2842a80ab585b9dadc6373ecceb0 https://www.encodeproject.org/files/ENCFF409JWS/@@download/ENCFF409JWS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF347MAZ bed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF218UGC, ENCFF361KFY, ENCFF419RSJ, ENCFF683IDH 191256 ENCODE Processing Pipeline b9d017cf72abd2fe43f3bef801ec220f https://www.encodeproject.org/files/ENCFF347MAZ/@@download/ENCFF347MAZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF586KOB bigBed narrowPeak conservative idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF347MAZ 462171 ENCODE Processing Pipeline c1d3640fd15af0f9e5dec29576aac506 https://www.encodeproject.org/files/ENCFF586KOB/@@download/ENCFF586KOB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF853WAM bigBed narrowPeak optimal idr thresholded peaks ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3, 4 ENCFF034OSV 757448 ENCODE Processing Pipeline fda91db2940e8a16251e85de49790176 https://www.encodeproject.org/files/ENCFF853WAM/@@download/ENCFF853WAM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF238LLZ fastq reads ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 716837644 Xiang-Dong Fu, UCSD f8b57eae3ac4673f355ccad03f8a1e4a https://www.encodeproject.org/files/ENCFF238LLZ/@@download/ENCFF238LLZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF292SYX/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF774WWF fastq reads ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 753631134 Xiang-Dong Fu, UCSD 36ff5bb6f426f558594cbbab8f41f440 https://www.encodeproject.org/files/ENCFF774WWF/@@download/ENCFF774WWF.fastq.gz Illumina HiSeq 2000 /files/ENCFF887XCD/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF223XLR fastq reads ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 1290520806 Xiang-Dong Fu, UCSD b3a848d8f37c74b6a3a27243c17f39d2 https://www.encodeproject.org/files/ENCFF223XLR/@@download/ENCFF223XLR.fastq.gz Illumina HiSeq 2500 /files/ENCFF292SYX/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF915BDU fastq reads ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 1396568992 Xiang-Dong Fu, UCSD acdaacab1545a6ebdf57fb00cab52065 https://www.encodeproject.org/files/ENCFF915BDU/@@download/ENCFF915BDU.fastq.gz Illumina HiSeq 2500 /files/ENCFF887XCD/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF616NXH bam unfiltered alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF643CGH, ENCFF774WWF, ENCFF915BDU 2015306055 ENCODE Processing Pipeline 460ef137c9a88346e702cb0b5ef3b119 https://www.encodeproject.org/files/ENCFF616NXH/@@download/ENCFF616NXH.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF178TOV bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF223XLR, ENCFF238LLZ, ENCFF643CGH 555537610 ENCODE Processing Pipeline 052c6db10ba835581836ad277805ceb0 https://www.encodeproject.org/files/ENCFF178TOV/@@download/ENCFF178TOV.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF479DBP bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF643CGH, ENCFF774WWF, ENCFF915BDU 524166638 ENCODE Processing Pipeline 73c4103cd8578d4871834679076718ad https://www.encodeproject.org/files/ENCFF479DBP/@@download/ENCFF479DBP.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF629GVZ bam unfiltered alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF223XLR, ENCFF238LLZ, ENCFF643CGH 1903059719 ENCODE Processing Pipeline da8559b7cde1cec18df7966af3170e23 https://www.encodeproject.org/files/ENCFF629GVZ/@@download/ENCFF629GVZ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF910CBX bam unfiltered alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF223XLR, ENCFF238LLZ, ENCFF807MUK 1888962616 ENCODE Processing Pipeline c6085c9d3c8eb57380238d6569ab86b6 https://www.encodeproject.org/files/ENCFF910CBX/@@download/ENCFF910CBX.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF366PYR bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF223XLR, ENCFF238LLZ, ENCFF807MUK 556161727 ENCODE Processing Pipeline 42a3358ec6a87830aabc4e9c139d696f https://www.encodeproject.org/files/ENCFF366PYR/@@download/ENCFF366PYR.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF025TLA bam unfiltered alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF774WWF, ENCFF807MUK, ENCFF915BDU 2000147760 ENCODE Processing Pipeline 0575abd31ba5e1a9d2c0039c85832af6 https://www.encodeproject.org/files/ENCFF025TLA/@@download/ENCFF025TLA.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF910NGM bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF774WWF, ENCFF807MUK, ENCFF915BDU 524809132 ENCODE Processing Pipeline 224c6ba5a7bebb4eb199fbb01f8178f2 https://www.encodeproject.org/files/ENCFF910NGM/@@download/ENCFF910NGM.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF889WJX bigWig signal p-value ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF450GNQ, ENCFF479DBP, ENCFF901YVZ 705717172 ENCODE Processing Pipeline db60f3eab3f3497d91012a6d12044bbe https://www.encodeproject.org/files/ENCFF889WJX/@@download/ENCFF889WJX.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF547YIN bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF450GNQ, ENCFF479DBP, ENCFF901YVZ 5303306 ENCODE Processing Pipeline f4b95d3792cf7bb2a28b892f0b61723a https://www.encodeproject.org/files/ENCFF547YIN/@@download/ENCFF547YIN.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF308JXP bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF178TOV, ENCFF450GNQ, ENCFF479DBP, ENCFF901YVZ 6396688 ENCODE Processing Pipeline 444f64a9039aa0232ba3ad63b17aacd2 https://www.encodeproject.org/files/ENCFF308JXP/@@download/ENCFF308JXP.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF272PBW bigWig signal p-value ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF178TOV, ENCFF450GNQ, ENCFF901YVZ 704792858 ENCODE Processing Pipeline 93b089e91946dfa34ca7beea5d925209 https://www.encodeproject.org/files/ENCFF272PBW/@@download/ENCFF272PBW.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF970PDE bigWig fold change over control ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF450GNQ, ENCFF479DBP, ENCFF901YVZ 468091262 ENCODE Processing Pipeline 847c94da8a047736d6319af8dcc93566 https://www.encodeproject.org/files/ENCFF970PDE/@@download/ENCFF970PDE.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF707DIF bigWig fold change over control ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF178TOV, ENCFF450GNQ, ENCFF479DBP, ENCFF901YVZ 744744934 ENCODE Processing Pipeline 70f16727191885cb3b7540b25443753f https://www.encodeproject.org/files/ENCFF707DIF/@@download/ENCFF707DIF.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF667WJG bigWig fold change over control ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF178TOV, ENCFF450GNQ, ENCFF901YVZ 474504096 ENCODE Processing Pipeline 694728348a50fd33716daa19984a268a https://www.encodeproject.org/files/ENCFF667WJG/@@download/ENCFF667WJG.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF487FNL bigWig signal p-value ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF178TOV, ENCFF450GNQ, ENCFF479DBP, ENCFF901YVZ 833749347 ENCODE Processing Pipeline 8c9afdf7e7290facbc2d983a75ac3191 https://www.encodeproject.org/files/ENCFF487FNL/@@download/ENCFF487FNL.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF879NWR bigBed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF547YIN 11062855 ENCODE Processing Pipeline 0f34b870e3b74925b3401a22de56c6b2 https://www.encodeproject.org/files/ENCFF879NWR/@@download/ENCFF879NWR.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF235GEZ bigBed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF308JXP 13383404 ENCODE Processing Pipeline 417ac2f867d0af081544e832923a3ed9 https://www.encodeproject.org/files/ENCFF235GEZ/@@download/ENCFF235GEZ.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF642XRH bed narrowPeak optimal idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF308JXP, ENCFF419RSJ, ENCFF433SRS, ENCFF547YIN 71876 ENCODE Processing Pipeline e801d4338ed53acc54be8dc25e60bfe0 https://www.encodeproject.org/files/ENCFF642XRH/@@download/ENCFF642XRH.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF433SRS bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF178TOV, ENCFF450GNQ, ENCFF901YVZ 5193233 ENCODE Processing Pipeline aeb5e8718188bd7568507460eaba7894 https://www.encodeproject.org/files/ENCFF433SRS/@@download/ENCFF433SRS.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF033VWK bigBed narrowPeak optimal idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF642XRH 165579 ENCODE Processing Pipeline 7e18a51e9d9fc4dcc647d768a13fe9a3 https://www.encodeproject.org/files/ENCFF033VWK/@@download/ENCFF033VWK.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF336JMA bigBed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF433SRS 11091147 ENCODE Processing Pipeline 424d13ed8d56fbb4ebfc7b114098b29c https://www.encodeproject.org/files/ENCFF336JMA/@@download/ENCFF336JMA.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF057DYX bed narrowPeak conservative idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF308JXP, ENCFF419RSJ, ENCFF433SRS, ENCFF547YIN 64889 ENCODE Processing Pipeline b0e32d660738816e2c3d400a9b1835b2 https://www.encodeproject.org/files/ENCFF057DYX/@@download/ENCFF057DYX.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF476UCM bigBed narrowPeak conservative idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF057DYX 155299 ENCODE Processing Pipeline 49c08802763f4a7690c251d362d9ffc7 https://www.encodeproject.org/files/ENCFF476UCM/@@download/ENCFF476UCM.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF376FRT bigWig fold change over control ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO 484253383 ENCODE Processing Pipeline 7c16dfbc1d6c6561bf058c98cd75021d https://www.encodeproject.org/files/ENCFF376FRT/@@download/ENCFF376FRT.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF110RBL bigWig signal p-value ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO 715616950 ENCODE Processing Pipeline a313dabc4f747aa2bbe571fa561988db https://www.encodeproject.org/files/ENCFF110RBL/@@download/ENCFF110RBL.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF215BZF bigWig fold change over control ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 465546712 ENCODE Processing Pipeline 418a3505da2d509cd4a9f9a819bfd280 https://www.encodeproject.org/files/ENCFF215BZF/@@download/ENCFF215BZF.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF966JON bigWig signal p-value ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 766256425 ENCODE Processing Pipeline ce3d167850802f67e2e59db0d11917f3 https://www.encodeproject.org/files/ENCFF966JON/@@download/ENCFF966JON.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF320TJQ bigWig fold change over control ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 753841110 ENCODE Processing Pipeline d4f48089db74b28ff4cfc47404f0ea46 https://www.encodeproject.org/files/ENCFF320TJQ/@@download/ENCFF320TJQ.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF331BYR bigWig signal p-value ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 695138030 ENCODE Processing Pipeline 69a9a21569bdbdf534bf5dbeac240efe https://www.encodeproject.org/files/ENCFF331BYR/@@download/ENCFF331BYR.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155AMR bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO 5235237 ENCODE Processing Pipeline 0ebc661caa54753dea0073347dc8f02a https://www.encodeproject.org/files/ENCFF155AMR/@@download/ENCFF155AMR.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF043DMT bigBed narrowPeak conservative idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF882EOS 190472 ENCODE Processing Pipeline eb929f4ae36b578a361790362d54c3e4 https://www.encodeproject.org/files/ENCFF043DMT/@@download/ENCFF043DMT.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF460OWI bed narrowPeak optimal idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF155AMR, ENCFF174MCF, ENCFF574KTG 73393 ENCODE Processing Pipeline d6389652c6e67c173138bb1b4e326b7b https://www.encodeproject.org/files/ENCFF460OWI/@@download/ENCFF460OWI.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF068FIG bigBed narrowPeak optimal idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF460OWI 196101 ENCODE Processing Pipeline 53ae2ef4dd81ea0f653fdc3774bad265 https://www.encodeproject.org/files/ENCFF068FIG/@@download/ENCFF068FIG.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF574KTG bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 6437606 ENCODE Processing Pipeline 68f17d6ecd68ff624dbdd7561e2b303b https://www.encodeproject.org/files/ENCFF574KTG/@@download/ENCFF574KTG.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF882EOS bed narrowPeak conservative idr thresholded peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF155AMR, ENCFF174MCF, ENCFF574KTG 69778 ENCODE Processing Pipeline 7f6a55c330a82aefe93ff25089f697fb https://www.encodeproject.org/files/ENCFF882EOS/@@download/ENCFF882EOS.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF526LXS bigBed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF574KTG 13372338 ENCODE Processing Pipeline 0524f5d9187f69a0fabcf81171ee5b95 https://www.encodeproject.org/files/ENCFF526LXS/@@download/ENCFF526LXS.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF174MCF bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 5397295 ENCODE Processing Pipeline 30f532ed213f19a383377aecaea5aa33 https://www.encodeproject.org/files/ENCFF174MCF/@@download/ENCFF174MCF.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF047XOP bigBed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF155AMR 11104788 ENCODE Processing Pipeline 01eb8394483bb479936ec020b9fd0500 https://www.encodeproject.org/files/ENCFF047XOP/@@download/ENCFF047XOP.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF616IMX bigBed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF174MCF 11058717 ENCODE Processing Pipeline 3cbefd5f883e3494ed7ddd43a3015073 https://www.encodeproject.org/files/ENCFF616IMX/@@download/ENCFF616IMX.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF312XEN fastq reads ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF246YGR 2432383206 Michael Snyder, Stanford 5b5cc4c3a1ea6b2184abfad2c5e5b069 SRA:SRR5112185 https://www.encodeproject.org/files/ENCFF312XEN/@@download/ENCFF312XEN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF426NQH fastq reads ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF957AJG 3039180522 Michael Snyder, Stanford 63461f28452eb1f86751d01a4086d00d SRA:SRR5112184 https://www.encodeproject.org/files/ENCFF426NQH/@@download/ENCFF426NQH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF246YGR fastq reads ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF312XEN 2511295692 Michael Snyder, Stanford b54fe6142aa3182905d0b96388121fc3 SRA:SRR5112185 https://www.encodeproject.org/files/ENCFF246YGR/@@download/ENCFF246YGR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF957AJG fastq reads ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF426NQH 3110028455 Michael Snyder, Stanford 164b448b8c95ac093e008205bdd4eba6 SRA:SRR5112184 https://www.encodeproject.org/files/ENCFF957AJG/@@download/ENCFF957AJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF515VSS bam unfiltered alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246YGR, ENCFF312XEN, ENCFF643CGH 5429336974 ENCODE Processing Pipeline 00bd42645aa24bd02f10785270630bb0 https://www.encodeproject.org/files/ENCFF515VSS/@@download/ENCFF515VSS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF544WGV bam unfiltered alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246YGR, ENCFF312XEN, ENCFF807MUK 5423348432 ENCODE Processing Pipeline 808201b5278568f6be4472cb19d8ef67 https://www.encodeproject.org/files/ENCFF544WGV/@@download/ENCFF544WGV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF399ZZU bam unfiltered alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF426NQH, ENCFF807MUK, ENCFF957AJG 6704838031 ENCODE Processing Pipeline 21d0198f3e65c1d48ab9a0a2c9ea5c12 https://www.encodeproject.org/files/ENCFF399ZZU/@@download/ENCFF399ZZU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF424TRF bam unfiltered alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF426NQH, ENCFF643CGH, ENCFF957AJG 6710837544 ENCODE Processing Pipeline b5d5f28c955a30813f915cc2a6ec9cc1 https://www.encodeproject.org/files/ENCFF424TRF/@@download/ENCFF424TRF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF233TEI bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246YGR, ENCFF312XEN, ENCFF643CGH 4759127939 ENCODE Processing Pipeline f4ea2c41c9677cdecee2307fd580a03b https://www.encodeproject.org/files/ENCFF233TEI/@@download/ENCFF233TEI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF827QKJ bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246YGR, ENCFF312XEN, ENCFF807MUK 4757188496 ENCODE Processing Pipeline 91764807bc100c7801b1a538fa6f0b31 https://www.encodeproject.org/files/ENCFF827QKJ/@@download/ENCFF827QKJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF388FXV bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF426NQH, ENCFF807MUK, ENCFF957AJG 5562299569 ENCODE Processing Pipeline d86bbda9e2cedb2351f9a2969f19cf96 https://www.encodeproject.org/files/ENCFF388FXV/@@download/ENCFF388FXV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF059IPA bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF426NQH, ENCFF643CGH, ENCFF957AJG 5564730499 ENCODE Processing Pipeline 555cb8f4debce21f49f5e2e1a0fcb084 https://www.encodeproject.org/files/ENCFF059IPA/@@download/ENCFF059IPA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF245CLS bigWig signal p-value ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF827QKJ 1399194495 ENCODE Processing Pipeline 4c6d6e576c98db915e3167c1f3780d8d https://www.encodeproject.org/files/ENCFF245CLS/@@download/ENCFF245CLS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF947THO bigWig signal p-value ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF388FXV 1432368711 ENCODE Processing Pipeline 163a76c55edde49c75e850adc29db38b https://www.encodeproject.org/files/ENCFF947THO/@@download/ENCFF947THO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF656PVA bigWig signal p-value ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF388FXV, ENCFF827QKJ 1949902075 ENCODE Processing Pipeline 78a91b08fa1b447960a4361afd5a0f74 https://www.encodeproject.org/files/ENCFF656PVA/@@download/ENCFF656PVA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF377RPA bigWig fold change over control ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF827QKJ 1449385446 ENCODE Processing Pipeline 032dbe65948c32b1ef6fdaafb544e131 https://www.encodeproject.org/files/ENCFF377RPA/@@download/ENCFF377RPA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF334IHP bigWig fold change over control ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF388FXV 1501276827 ENCODE Processing Pipeline b8ce3ae4f556a791273bfb580321205a https://www.encodeproject.org/files/ENCFF334IHP/@@download/ENCFF334IHP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF645IOX bigWig fold change over control ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF388FXV, ENCFF827QKJ 2037265069 ENCODE Processing Pipeline 52de75b3af8c461e0eb389413bb40e11 https://www.encodeproject.org/files/ENCFF645IOX/@@download/ENCFF645IOX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF045DDN bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF827QKJ 7089363 ENCODE Processing Pipeline f1a873475fa3503c07fbffeff7cfadb2 https://www.encodeproject.org/files/ENCFF045DDN/@@download/ENCFF045DDN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF875YEH bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF388FXV 7038756 ENCODE Processing Pipeline 4cb7fa434026190b21b35519433a772b https://www.encodeproject.org/files/ENCFF875YEH/@@download/ENCFF875YEH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF177PBO bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF388FXV, ENCFF827QKJ 7267448 ENCODE Processing Pipeline d89273c7268fe1d58b7d3ac378822122 https://www.encodeproject.org/files/ENCFF177PBO/@@download/ENCFF177PBO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF258WIW bigBed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF045DDN 13269007 ENCODE Processing Pipeline 992fb4acd84f2d12811d444e90d66a1d https://www.encodeproject.org/files/ENCFF258WIW/@@download/ENCFF258WIW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF311DBE bigBed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF875YEH 13342020 ENCODE Processing Pipeline 2207c5b0299c560ba369817180ea03d2 https://www.encodeproject.org/files/ENCFF311DBE/@@download/ENCFF311DBE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF959XDC bigBed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF177PBO 13191115 ENCODE Processing Pipeline 1502fd555dc1c5aa5a41c4c5dd1adaa7 https://www.encodeproject.org/files/ENCFF959XDC/@@download/ENCFF959XDC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF464TTK bed narrowPeak conservative idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF045DDN, ENCFF177PBO, ENCFF875YEH 644981 ENCODE Processing Pipeline a9341a307a5e8c971ad0284b143b23be https://www.encodeproject.org/files/ENCFF464TTK/@@download/ENCFF464TTK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF839OMT bigBed narrowPeak conservative idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF464TTK 1217846 ENCODE Processing Pipeline 8113bfdc4aadaf97277f4a530ca66f33 https://www.encodeproject.org/files/ENCFF839OMT/@@download/ENCFF839OMT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF620ZDF bed narrowPeak optimal idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF045DDN, ENCFF177PBO, ENCFF875YEH 690446 ENCODE Processing Pipeline 2698efb354794c0218e90f40df413017 https://www.encodeproject.org/files/ENCFF620ZDF/@@download/ENCFF620ZDF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF412CEY bigBed narrowPeak optimal idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF620ZDF 1287187 ENCODE Processing Pipeline 739583799d4abb27096e4114c9d698c9 https://www.encodeproject.org/files/ENCFF412CEY/@@download/ENCFF412CEY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF618OGS bigWig signal p-value ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF233TEI 1311480772 ENCODE Processing Pipeline 185eb32acf2729cbba295b35e8eda67f https://www.encodeproject.org/files/ENCFF618OGS/@@download/ENCFF618OGS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF478AUM bigWig signal p-value ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF059IPA 1435483704 ENCODE Processing Pipeline ebf04d5bf38ba200416dbf4b3caed507 https://www.encodeproject.org/files/ENCFF478AUM/@@download/ENCFF478AUM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF182VMV bigWig signal p-value ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF059IPA, ENCFF233TEI 1939638126 ENCODE Processing Pipeline 49906361254b1831e3e47cb01422344d https://www.encodeproject.org/files/ENCFF182VMV/@@download/ENCFF182VMV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF303MDC bigWig fold change over control ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF233TEI 1452907885 ENCODE Processing Pipeline 9b03312b7caca0006bdac4173fea6016 https://www.encodeproject.org/files/ENCFF303MDC/@@download/ENCFF303MDC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF078FJX bigWig fold change over control ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF059IPA 1501619707 ENCODE Processing Pipeline d84c94b1edbb055d355ef05a636afcbd https://www.encodeproject.org/files/ENCFF078FJX/@@download/ENCFF078FJX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF317CKJ bigWig fold change over control ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF059IPA, ENCFF233TEI 2027819839 ENCODE Processing Pipeline 11912499a7cf9e65678e339c340f7eeb https://www.encodeproject.org/files/ENCFF317CKJ/@@download/ENCFF317CKJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF326UIT bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF233TEI 7002320 ENCODE Processing Pipeline 1c9eaf262c0ac6993e3c7c6454d7fe52 https://www.encodeproject.org/files/ENCFF326UIT/@@download/ENCFF326UIT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF924JAR bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF059IPA 6927755 ENCODE Processing Pipeline 404dc97648abd9fad068569ba7480e69 https://www.encodeproject.org/files/ENCFF924JAR/@@download/ENCFF924JAR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF296ABI bigBed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF326UIT 13245048 ENCODE Processing Pipeline 59ce0e019a6c7a22a3a0db71557e9c4a https://www.encodeproject.org/files/ENCFF296ABI/@@download/ENCFF296ABI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF609CUB bigBed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF924JAR 13305156 ENCODE Processing Pipeline a82a4e40cb23f5882102d2aaba93a19c https://www.encodeproject.org/files/ENCFF609CUB/@@download/ENCFF609CUB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF269CDX bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF059IPA, ENCFF233TEI 7208782 ENCODE Processing Pipeline 9f95a9f50e1d8e336fb79c22cf437d70 https://www.encodeproject.org/files/ENCFF269CDX/@@download/ENCFF269CDX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF844BAK bigBed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF269CDX 13142235 ENCODE Processing Pipeline 3c8cf3c64cf812f82e2cbb75fdb29cbd https://www.encodeproject.org/files/ENCFF844BAK/@@download/ENCFF844BAK.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF772VBP bigBed narrowPeak conservative idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF999IUR 1195502 ENCODE Processing Pipeline 0df6f84832bf11ee070d3e459bec05ff https://www.encodeproject.org/files/ENCFF772VBP/@@download/ENCFF772VBP.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF972SVU bigBed narrowPeak optimal idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF884RBR 1272258 ENCODE Processing Pipeline d4a85d632a8cca899568cc92a6814b28 https://www.encodeproject.org/files/ENCFF972SVU/@@download/ENCFF972SVU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF884RBR bed narrowPeak optimal idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF269CDX, ENCFF326UIT, ENCFF419RSJ, ENCFF924JAR 676477 ENCODE Processing Pipeline 42195ebc520995c5ba8dac7f030df28c https://www.encodeproject.org/files/ENCFF884RBR/@@download/ENCFF884RBR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF999IUR bed narrowPeak conservative idr thresholded peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF269CDX, ENCFF326UIT, ENCFF419RSJ, ENCFF924JAR 626477 ENCODE Processing Pipeline fa4326fb100e0db1150cc14b97113d15 https://www.encodeproject.org/files/ENCFF999IUR/@@download/ENCFF999IUR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF548NUZ fastq reads ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF800BVA 2799990044 Michael Snyder, Stanford 5ecf000670ac5455d1656582d45f887b SRA:SRR5112157 https://www.encodeproject.org/files/ENCFF548NUZ/@@download/ENCFF548NUZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF800BVA fastq reads ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF548NUZ 2900506731 Michael Snyder, Stanford 06682135196aeca28aec66a8ad15e0df SRA:SRR5112157 https://www.encodeproject.org/files/ENCFF800BVA/@@download/ENCFF800BVA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF485SUN fastq reads ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF292BLL 2573380112 Michael Snyder, Stanford 0c3b15191a17c045b76b573c3639b5cd SRA:SRR5112156 https://www.encodeproject.org/files/ENCFF485SUN/@@download/ENCFF485SUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF292BLL fastq reads ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF485SUN 2588968342 Michael Snyder, Stanford 205694eef5df7f5f910a361da4dec8d8 SRA:SRR5112156 https://www.encodeproject.org/files/ENCFF292BLL/@@download/ENCFF292BLL.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF089UUZ bam unfiltered alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF292BLL, ENCFF485SUN, ENCFF807MUK 5236754198 ENCODE Processing Pipeline 6ae47c60371dfd0a26446a0bf6d8ee59 https://www.encodeproject.org/files/ENCFF089UUZ/@@download/ENCFF089UUZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF519NVD bam unfiltered alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF548NUZ, ENCFF800BVA, ENCFF807MUK 6258887985 ENCODE Processing Pipeline 5c2bac9643905003ff8e56f908c32920 https://www.encodeproject.org/files/ENCFF519NVD/@@download/ENCFF519NVD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF863MDM bam unfiltered alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF548NUZ, ENCFF643CGH, ENCFF800BVA 6265436873 ENCODE Processing Pipeline e6561e0b7b2d151ccd873bad1242c940 https://www.encodeproject.org/files/ENCFF863MDM/@@download/ENCFF863MDM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF903IHH bam unfiltered alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF292BLL, ENCFF485SUN, ENCFF643CGH 5242982909 ENCODE Processing Pipeline d6c50d9960c6b02df96bd96958cb4ca0 https://www.encodeproject.org/files/ENCFF903IHH/@@download/ENCFF903IHH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF759NKM bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF292BLL, ENCFF485SUN, ENCFF807MUK 4623723614 ENCODE Processing Pipeline 0db9a7cda5fbf4681b4825dc90c3a0db https://www.encodeproject.org/files/ENCFF759NKM/@@download/ENCFF759NKM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF004WBX bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF548NUZ, ENCFF800BVA, ENCFF807MUK 5270877086 ENCODE Processing Pipeline cb21f603d35b663fd6d2ace81af76168 https://www.encodeproject.org/files/ENCFF004WBX/@@download/ENCFF004WBX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF356TOS bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF548NUZ, ENCFF643CGH, ENCFF800BVA 5272129374 ENCODE Processing Pipeline 40e73876f9b689df13f1012cd74f78ff https://www.encodeproject.org/files/ENCFF356TOS/@@download/ENCFF356TOS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF379UQD bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF292BLL, ENCFF485SUN, ENCFF643CGH 4625254808 ENCODE Processing Pipeline 7d37da662261df42881062c016104751 https://www.encodeproject.org/files/ENCFF379UQD/@@download/ENCFF379UQD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF731PYC bigWig signal p-value ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF004WBX 1214523176 ENCODE Processing Pipeline 540665195a14c33bb7c202371609317a https://www.encodeproject.org/files/ENCFF731PYC/@@download/ENCFF731PYC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF661CIP bigWig signal p-value ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF759NKM 1310988699 ENCODE Processing Pipeline 83349f0609cd5ae5e2bc79cafef28553 https://www.encodeproject.org/files/ENCFF661CIP/@@download/ENCFF661CIP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF813OKW bigWig signal p-value ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF004WBX, ENCFF759NKM 1963111357 ENCODE Processing Pipeline 276c804884b307d9499773d1002ea2f2 https://www.encodeproject.org/files/ENCFF813OKW/@@download/ENCFF813OKW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF202SGM bigWig fold change over control ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF004WBX 1433865239 ENCODE Processing Pipeline fc069227418a6beea1e2f1212ad22bcc https://www.encodeproject.org/files/ENCFF202SGM/@@download/ENCFF202SGM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF906NEA bigWig fold change over control ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF759NKM 1409356543 ENCODE Processing Pipeline 6936b0232a708b8d34a79515e52e2dc5 https://www.encodeproject.org/files/ENCFF906NEA/@@download/ENCFF906NEA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF782HQW bigWig fold change over control ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF004WBX, ENCFF759NKM 1984764532 ENCODE Processing Pipeline da2022fe1e0af112b9ba15120b2904d6 https://www.encodeproject.org/files/ENCFF782HQW/@@download/ENCFF782HQW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF255SFG bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF004WBX 7001128 ENCODE Processing Pipeline 8ceed69c821a3b5588f14244906cd8a8 https://www.encodeproject.org/files/ENCFF255SFG/@@download/ENCFF255SFG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF974BNY bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF759NKM 6990508 ENCODE Processing Pipeline ec95858af083f5d7d2160a276779d0de https://www.encodeproject.org/files/ENCFF974BNY/@@download/ENCFF974BNY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF922GQP bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF004WBX, ENCFF759NKM 7204874 ENCODE Processing Pipeline 4473875f4a5bcd95e9f22a648dd3fc9f https://www.encodeproject.org/files/ENCFF922GQP/@@download/ENCFF922GQP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF738CGX bigBed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF255SFG 13557410 ENCODE Processing Pipeline 1210c4311860ad0c53d2b4136e9214de https://www.encodeproject.org/files/ENCFF738CGX/@@download/ENCFF738CGX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF727MMM bigBed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF974BNY 13509432 ENCODE Processing Pipeline 6c8c1032442ff829891ff9cef4e7ff48 https://www.encodeproject.org/files/ENCFF727MMM/@@download/ENCFF727MMM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF179OHB bigBed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF922GQP 13412707 ENCODE Processing Pipeline 76ca3df17243aec0caebf7da9b4096cc https://www.encodeproject.org/files/ENCFF179OHB/@@download/ENCFF179OHB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF965MJL bed narrowPeak conservative idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF255SFG, ENCFF922GQP, ENCFF974BNY 539819 ENCODE Processing Pipeline d6f696479a7cfc08ba0709923647de4b https://www.encodeproject.org/files/ENCFF965MJL/@@download/ENCFF965MJL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF115AUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF965MJL 1126904 ENCODE Processing Pipeline c93ec6ad20d794dd7ed1a5bca0924a0e https://www.encodeproject.org/files/ENCFF115AUZ/@@download/ENCFF115AUZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF070GBJ bed narrowPeak optimal idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF255SFG, ENCFF922GQP, ENCFF974BNY 610925 ENCODE Processing Pipeline faba603b80252018fe24c6ca53ec2fdf https://www.encodeproject.org/files/ENCFF070GBJ/@@download/ENCFF070GBJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF904ZMN bigBed narrowPeak optimal idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF070GBJ 1238019 ENCODE Processing Pipeline 5744bbf5f763b8f0268ebf6cb230910b https://www.encodeproject.org/files/ENCFF904ZMN/@@download/ENCFF904ZMN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF205ZMA bigWig signal p-value ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF356TOS 1440281247 ENCODE Processing Pipeline cba9bb70509d076a1625602a0bc4449e https://www.encodeproject.org/files/ENCFF205ZMA/@@download/ENCFF205ZMA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF203XKP bigWig signal p-value ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF379UQD 1356318717 ENCODE Processing Pipeline fb236e86edf89b27fdafac87e660989d https://www.encodeproject.org/files/ENCFF203XKP/@@download/ENCFF203XKP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF859WFH bigWig signal p-value ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF356TOS, ENCFF379UQD 1970976625 ENCODE Processing Pipeline ff25417ff1362950d0e36651f59060d3 https://www.encodeproject.org/files/ENCFF859WFH/@@download/ENCFF859WFH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF551RBT bigWig fold change over control ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF356TOS 1443407734 ENCODE Processing Pipeline ed7ee0203651f347adeb2ed502d4c33d https://www.encodeproject.org/files/ENCFF551RBT/@@download/ENCFF551RBT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF148AAN bigWig fold change over control ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF379UQD 1382871272 ENCODE Processing Pipeline 8b51f1a70c4f631c4ddb544f32e100e7 https://www.encodeproject.org/files/ENCFF148AAN/@@download/ENCFF148AAN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF985JDF bigWig fold change over control ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF356TOS, ENCFF379UQD 1997128267 ENCODE Processing Pipeline f8e43223f1f6fef841e08af810ae0d0b https://www.encodeproject.org/files/ENCFF985JDF/@@download/ENCFF985JDF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF075JTN bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF356TOS 6893452 ENCODE Processing Pipeline 483e002958010f3954d91196043f7c2b https://www.encodeproject.org/files/ENCFF075JTN/@@download/ENCFF075JTN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF189LHV bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF379UQD 6890204 ENCODE Processing Pipeline bfba5ebdfdbfee26075db8353f49467a https://www.encodeproject.org/files/ENCFF189LHV/@@download/ENCFF189LHV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF871TVQ bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF356TOS, ENCFF379UQD 7221282 ENCODE Processing Pipeline 3ca1745c3d88c757abb310b43570590a https://www.encodeproject.org/files/ENCFF871TVQ/@@download/ENCFF871TVQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF188GDZ bigBed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF075JTN 13561133 ENCODE Processing Pipeline 38e0524a7ecf1c739f8376ac54b8a849 https://www.encodeproject.org/files/ENCFF188GDZ/@@download/ENCFF188GDZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF838HKG bigBed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF189LHV 13495395 ENCODE Processing Pipeline ef66fe449df78ccc7895974c8a48e2fc https://www.encodeproject.org/files/ENCFF838HKG/@@download/ENCFF838HKG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF976WVT bigBed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF871TVQ 13463615 ENCODE Processing Pipeline 96ca0cd5d2660847729e309cba6ee32c https://www.encodeproject.org/files/ENCFF976WVT/@@download/ENCFF976WVT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF874AEL bed narrowPeak conservative idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF075JTN, ENCFF189LHV, ENCFF419RSJ, ENCFF871TVQ 546612 ENCODE Processing Pipeline e0c19e43ed587e042627328fe80c416e https://www.encodeproject.org/files/ENCFF874AEL/@@download/ENCFF874AEL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF465KXI bigBed narrowPeak conservative idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF874AEL 1135896 ENCODE Processing Pipeline 37cd2e4e7f33247264a42aaa4a32ead8 https://www.encodeproject.org/files/ENCFF465KXI/@@download/ENCFF465KXI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF324ETS bed narrowPeak optimal idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF075JTN, ENCFF189LHV, ENCFF419RSJ, ENCFF871TVQ 607330 ENCODE Processing Pipeline 14597525e3aeda5d090cf9d8bd77aa15 https://www.encodeproject.org/files/ENCFF324ETS/@@download/ENCFF324ETS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF800VVX bigBed narrowPeak optimal idr thresholded peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF324ETS 1231117 ENCODE Processing Pipeline 3d7cb19afaf4116e440a4e071fcf475d https://www.encodeproject.org/files/ENCFF800VVX/@@download/ENCFF800VVX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF749CQM bam unfiltered alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPZ, ENCFF002EGP, ENCFF807MUK 6673797244 ENCODE Processing Pipeline 19ae767c3964d4487715b06ab6083ff9 https://www.encodeproject.org/files/ENCFF749CQM/@@download/ENCFF749CQM.bam hg19 released antibody characterized with exemption ENCFF312MUD bam unfiltered alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPX, ENCFF002EGR, ENCFF807MUK 6162452514 ENCODE Processing Pipeline e6ddc044d1bafe41a52dcfcd5c860b7e https://www.encodeproject.org/files/ENCFF312MUD/@@download/ENCFF312MUD.bam hg19 released antibody characterized with exemption ENCFF798VIU bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 1364939886 ENCODE Processing Pipeline c8d865b58964f5c457f3596c93163821 https://www.encodeproject.org/files/ENCFF798VIU/@@download/ENCFF798VIU.bigWig hg19 released antibody characterized with exemption ENCFF536XWL bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 1695881554 ENCODE Processing Pipeline 8bbdb69bb0a14c71fb5a58f39019ca11 https://www.encodeproject.org/files/ENCFF536XWL/@@download/ENCFF536XWL.bigWig hg19 released antibody characterized with exemption ENCFF002DPX fastq reads ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGR 2848510587 Michael Snyder, Stanford b2acd4e8bc3e1b1459ad0af1755c68fb SRA:SRR5111366 https://www.encodeproject.org/files/ENCFF002DPX/@@download/ENCFF002DPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released antibody characterized with exemption ENCFF002DPZ fastq reads ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGP 3044299541 Michael Snyder, Stanford d1a70f1ef54b5d28a2401d1bc828d448 SRA:SRR5111365 https://www.encodeproject.org/files/ENCFF002DPZ/@@download/ENCFF002DPZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released antibody characterized with exemption ENCFF002EGP fastq reads ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPZ 3140833812 Michael Snyder, Stanford a071bc9773e3d0bf0d23f6306fede2da SRA:SRR5111365 https://www.encodeproject.org/files/ENCFF002EGP/@@download/ENCFF002EGP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released antibody characterized with exemption ENCFF002EGR fastq reads ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPX 2820784278 Michael Snyder, Stanford d8fb023c0d93e85adac1e39fe0711a92 SRA:SRR5111366 https://www.encodeproject.org/files/ENCFF002EGR/@@download/ENCFF002EGR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released antibody characterized with exemption ENCFF283HNP bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 1258447163 ENCODE Processing Pipeline c5fe40bf76c275157788d4708c7c8173 https://www.encodeproject.org/files/ENCFF283HNP/@@download/ENCFF283HNP.bigWig hg19 released antibody characterized with exemption ENCFF164EBJ bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF652BBA, ENCFF734GEN 2251622449 ENCODE Processing Pipeline ff0ba2dcb3a7cc4a65c3cb51c8d14af8 https://www.encodeproject.org/files/ENCFF164EBJ/@@download/ENCFF164EBJ.bigWig hg19 released antibody characterized with exemption ENCFF761DGU bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 1348291136 ENCODE Processing Pipeline f364c115715026d292d192c84bb17b72 https://www.encodeproject.org/files/ENCFF761DGU/@@download/ENCFF761DGU.bigWig hg19 released antibody characterized with exemption ENCFF676GOM bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF652BBA, ENCFF734GEN 2272482132 ENCODE Processing Pipeline cdcce0c97d6c8c4f85fc380b48a07438 https://www.encodeproject.org/files/ENCFF676GOM/@@download/ENCFF676GOM.bigWig hg19 released antibody characterized with exemption ENCFF917ALR bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF652BBA, ENCFF734GEN 7228286 ENCODE Processing Pipeline 2f54f71c6ed05bf2d7d9ee457d05f7e4 https://www.encodeproject.org/files/ENCFF917ALR/@@download/ENCFF917ALR.bed.gz hg19 released antibody characterized with exemption ENCFF386ILV bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 6707725 ENCODE Processing Pipeline 5a9d61cbb45c30936e48fbbf626c5615 https://www.encodeproject.org/files/ENCFF386ILV/@@download/ENCFF386ILV.bed.gz hg19 released antibody characterized with exemption ENCFF184RLT bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 6445936 ENCODE Processing Pipeline 5e8bb8a3df0b18c40c7c5148f2e6e8fc https://www.encodeproject.org/files/ENCFF184RLT/@@download/ENCFF184RLT.bed.gz hg19 released antibody characterized with exemption ENCFF364JFR bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF386ILV 11308238 ENCODE Processing Pipeline ece42918a59117f98bf7e4c142215932 https://www.encodeproject.org/files/ENCFF364JFR/@@download/ENCFF364JFR.bigBed hg19 released antibody characterized with exemption ENCFF380MAU bed narrowPeak conservative idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF184RLT, ENCFF386ILV, ENCFF917ALR 280403 ENCODE Processing Pipeline 2b93a0bc3e411e4d4496193dc287390c https://www.encodeproject.org/files/ENCFF380MAU/@@download/ENCFF380MAU.bed.gz hg19 released antibody characterized with exemption ENCFF310GMK bigBed narrowPeak optimal idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF492DZG 755459 ENCODE Processing Pipeline 689087a3bf986a8971ff780e2b92f74a https://www.encodeproject.org/files/ENCFF310GMK/@@download/ENCFF310GMK.bigBed hg19 released antibody characterized with exemption ENCFF726GTL bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF917ALR 13396280 ENCODE Processing Pipeline f2f55c334d7e8c68461a76f7c1d55323 https://www.encodeproject.org/files/ENCFF726GTL/@@download/ENCFF726GTL.bigBed hg19 released antibody characterized with exemption ENCFF398VZA bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF184RLT 11245696 ENCODE Processing Pipeline ae26f9fcf72b40331e44b64ad870db0a https://www.encodeproject.org/files/ENCFF398VZA/@@download/ENCFF398VZA.bigBed hg19 released antibody characterized with exemption ENCFF400VRB bigBed narrowPeak conservative idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF380MAU 612112 ENCODE Processing Pipeline c97a84c1d978b4a711d66b521b81fa77 https://www.encodeproject.org/files/ENCFF400VRB/@@download/ENCFF400VRB.bigBed hg19 released antibody characterized with exemption ENCFF492DZG bed narrowPeak optimal idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF184RLT, ENCFF386ILV, ENCFF917ALR 364883 ENCODE Processing Pipeline 1671a4b78c9af2be9439811695455aab https://www.encodeproject.org/files/ENCFF492DZG/@@download/ENCFF492DZG.bed.gz hg19 released antibody characterized with exemption ENCFF652BBA bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPZ, ENCFF002EGP, ENCFF807MUK 5796726074 ENCODE Processing Pipeline 0c4bdf2983f6aa7e1e48f7e8e5411c6a https://www.encodeproject.org/files/ENCFF652BBA/@@download/ENCFF652BBA.bam hg19 released antibody characterized with exemption ENCFF734GEN bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPX, ENCFF002EGR, ENCFF807MUK 5441673160 ENCODE Processing Pipeline 9ae8bad051aa79e0a39cadfd9e722ec6 https://www.encodeproject.org/files/ENCFF734GEN/@@download/ENCFF734GEN.bam hg19 released antibody characterized with exemption ENCFF474QUN bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 1356119287 ENCODE Processing Pipeline c6ff532275ea261d12e490a03cdaf1af https://www.encodeproject.org/files/ENCFF474QUN/@@download/ENCFF474QUN.bigWig hg19 archived antibody characterized with exemption ENCFF137ZRS bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 1262152042 ENCODE Processing Pipeline cbe0fdf9c6eba110c2b504521e0da5c1 https://www.encodeproject.org/files/ENCFF137ZRS/@@download/ENCFF137ZRS.bigWig hg19 archived antibody characterized with exemption ENCFF034OZD bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF652BBA, ENCFF734GEN 2235928183 ENCODE Processing Pipeline cb6a664ae5a0d193ef28e349377b1abc https://www.encodeproject.org/files/ENCFF034OZD/@@download/ENCFF034OZD.bigWig hg19 archived antibody characterized with exemption ENCFF691VKH bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 1684324619 ENCODE Processing Pipeline c06e42ee8a79d02338a61cf7e58e90e7 https://www.encodeproject.org/files/ENCFF691VKH/@@download/ENCFF691VKH.bigWig hg19 archived antibody characterized with exemption ENCFF242NCD bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 1351650128 ENCODE Processing Pipeline 4d956681b838b14400428cd32aa27af5 https://www.encodeproject.org/files/ENCFF242NCD/@@download/ENCFF242NCD.bigWig hg19 archived antibody characterized with exemption ENCFF214OVU bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF652BBA, ENCFF734GEN 2256323610 ENCODE Processing Pipeline c689546d95e067603e1b4be844e2c5b0 https://www.encodeproject.org/files/ENCFF214OVU/@@download/ENCFF214OVU.bigWig hg19 archived antibody characterized with exemption ENCFF111OLA bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF920MOI 11256612 ENCODE Processing Pipeline 893f313e241d826a2eb01defa98ecf49 https://www.encodeproject.org/files/ENCFF111OLA/@@download/ENCFF111OLA.bigBed hg19 archived antibody characterized with exemption ENCFF040IGJ bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF583FAG, ENCFF652BBA, ENCFF734GEN 7262722 ENCODE Processing Pipeline d2468ecc8a809d069c6e2f8f41e0b4b5 https://www.encodeproject.org/files/ENCFF040IGJ/@@download/ENCFF040IGJ.bed.gz hg19 archived antibody characterized with exemption ENCFF364YQW bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 6816660 ENCODE Processing Pipeline a7f2d4300dab58bb7b9ce4abc0d9d609 https://www.encodeproject.org/files/ENCFF364YQW/@@download/ENCFF364YQW.bed.gz hg19 archived antibody characterized with exemption ENCFF089NVF bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF364YQW 11311657 ENCODE Processing Pipeline 30a106ccce87bd310b79cf8566a1a07d https://www.encodeproject.org/files/ENCFF089NVF/@@download/ENCFF089NVF.bigBed hg19 archived antibody characterized with exemption ENCFF920MOI bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 6599824 ENCODE Processing Pipeline 045916b3c64f2036f03faeea779d022d https://www.encodeproject.org/files/ENCFF920MOI/@@download/ENCFF920MOI.bed.gz hg19 archived antibody characterized with exemption ENCFF262KTQ bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF040IGJ 13397368 ENCODE Processing Pipeline f0c3f16a05d9934d93039c868fcc127e https://www.encodeproject.org/files/ENCFF262KTQ/@@download/ENCFF262KTQ.bigBed hg19 archived antibody characterized with exemption ENCFF787ONU bam unfiltered alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPX, ENCFF002EGR, ENCFF643CGH 6174633473 ENCODE Processing Pipeline 3e2ca804b82506a8cb2bc5de85010d93 https://www.encodeproject.org/files/ENCFF787ONU/@@download/ENCFF787ONU.bam GRCh38 released antibody characterized with exemption ENCFF876TLQ bam unfiltered alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPZ, ENCFF002EGP, ENCFF643CGH 6685860336 ENCODE Processing Pipeline 6970536160ec178536465a86f9cd9368 https://www.encodeproject.org/files/ENCFF876TLQ/@@download/ENCFF876TLQ.bam GRCh38 released antibody characterized with exemption ENCFF136LTE bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPX, ENCFF002EGR, ENCFF643CGH 5445945766 ENCODE Processing Pipeline 31ed5e2ef989ef1092e7914080eb79fe https://www.encodeproject.org/files/ENCFF136LTE/@@download/ENCFF136LTE.bam GRCh38 released antibody characterized with exemption ENCFF037VFP bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPZ, ENCFF002EGP, ENCFF643CGH 5801382821 ENCODE Processing Pipeline 17de5cceb31dba8efdd7eadd8c10ab0f https://www.encodeproject.org/files/ENCFF037VFP/@@download/ENCFF037VFP.bam GRCh38 released antibody characterized with exemption ENCFF537FDW bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF136LTE, ENCFF291AFY, ENCFF426RDP 1461778077 ENCODE Processing Pipeline c0606c2f891dedbd49c73316a03e38ea https://www.encodeproject.org/files/ENCFF537FDW/@@download/ENCFF537FDW.bigWig GRCh38 released antibody characterized with exemption ENCFF164WRX bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF037VFP, ENCFF291AFY 1033540702 ENCODE Processing Pipeline 76b4588fb06225dbfc8196e26c44f473 https://www.encodeproject.org/files/ENCFF164WRX/@@download/ENCFF164WRX.bigWig GRCh38 released antibody characterized with exemption ENCFF841OQX bigWig signal p-value ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF037VFP, ENCFF136LTE, ENCFF291AFY, ENCFF426RDP 2255937443 ENCODE Processing Pipeline 50004e47a7e2c13d87b72d3014cae578 https://www.encodeproject.org/files/ENCFF841OQX/@@download/ENCFF841OQX.bigWig GRCh38 released antibody characterized with exemption ENCFF790LAV bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF136LTE, ENCFF291AFY, ENCFF426RDP 1687092786 ENCODE Processing Pipeline 57067f980d4c4b7a79b9fffbcf6c5792 https://www.encodeproject.org/files/ENCFF790LAV/@@download/ENCFF790LAV.bigWig GRCh38 released antibody characterized with exemption ENCFF335MGJ bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF037VFP, ENCFF291AFY 1353102684 ENCODE Processing Pipeline 5327b2ff417146ab060b64a6b6c37eb3 https://www.encodeproject.org/files/ENCFF335MGJ/@@download/ENCFF335MGJ.bigWig GRCh38 released antibody characterized with exemption ENCFF137NZS bigWig fold change over control ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF037VFP, ENCFF136LTE, ENCFF291AFY, ENCFF426RDP 2279786500 ENCODE Processing Pipeline c3529b0644633315f6f06fc765a71775 https://www.encodeproject.org/files/ENCFF137NZS/@@download/ENCFF137NZS.bigWig GRCh38 released antibody characterized with exemption ENCFF294IBD bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF136LTE, ENCFF291AFY, ENCFF426RDP 6715193 ENCODE Processing Pipeline 4de32c310bc86f76cb0ef66c1993a628 https://www.encodeproject.org/files/ENCFF294IBD/@@download/ENCFF294IBD.bed.gz GRCh38 released antibody characterized with exemption ENCFF336MFE bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF037VFP, ENCFF291AFY 6456122 ENCODE Processing Pipeline b3753f67d125177037f0464810dbec6a https://www.encodeproject.org/files/ENCFF336MFE/@@download/ENCFF336MFE.bed.gz GRCh38 released antibody characterized with exemption ENCFF616JAW bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF037VFP, ENCFF136LTE, ENCFF291AFY, ENCFF426RDP 7225525 ENCODE Processing Pipeline b1a380dd518390e5850d1769eac36196 https://www.encodeproject.org/files/ENCFF616JAW/@@download/ENCFF616JAW.bed.gz GRCh38 released antibody characterized with exemption ENCFF690PCR bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF294IBD 11327930 ENCODE Processing Pipeline c64b2f8828418783a172b7cd49b15e94 https://www.encodeproject.org/files/ENCFF690PCR/@@download/ENCFF690PCR.bigBed GRCh38 released antibody characterized with exemption ENCFF932FQB bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF336MFE 11268570 ENCODE Processing Pipeline b7709e1cd6bbb0740d30402059cfa4f8 https://www.encodeproject.org/files/ENCFF932FQB/@@download/ENCFF932FQB.bigBed GRCh38 released antibody characterized with exemption ENCFF623ZIP bigBed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF616JAW 13401887 ENCODE Processing Pipeline a3586b16ea7375980ca9703b90d97596 https://www.encodeproject.org/files/ENCFF623ZIP/@@download/ENCFF623ZIP.bigBed GRCh38 released antibody characterized with exemption ENCFF241JCK bed narrowPeak conservative idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF294IBD, ENCFF336MFE, ENCFF419RSJ, ENCFF616JAW 277447 ENCODE Processing Pipeline 0e66c31cde3c3b4de0adbcdb11429a68 https://www.encodeproject.org/files/ENCFF241JCK/@@download/ENCFF241JCK.bed.gz GRCh38 released antibody characterized with exemption ENCFF666YGQ bed narrowPeak optimal idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF294IBD, ENCFF336MFE, ENCFF419RSJ, ENCFF616JAW 369345 ENCODE Processing Pipeline 488304226cf713b8697eded6f0fedd28 https://www.encodeproject.org/files/ENCFF666YGQ/@@download/ENCFF666YGQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF213BKG bigBed narrowPeak conservative idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF241JCK 610819 ENCODE Processing Pipeline 1ecc9025be5913a02bbb242ab6ca8c5c https://www.encodeproject.org/files/ENCFF213BKG/@@download/ENCFF213BKG.bigBed GRCh38 released antibody characterized with exemption ENCFF204UYO bigBed narrowPeak optimal idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF666YGQ 765726 ENCODE Processing Pipeline a76e92f824accc312181bba9a14b7442 https://www.encodeproject.org/files/ENCFF204UYO/@@download/ENCFF204UYO.bigBed GRCh38 released antibody characterized with exemption ENCFF499GYI bed narrowPeak conservative idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF040IGJ, ENCFF364YQW, ENCFF920MOI 229664 ENCODE Processing Pipeline fdcf714746cb12046049a0fc895768cd https://www.encodeproject.org/files/ENCFF499GYI/@@download/ENCFF499GYI.bed.gz hg19 archived antibody characterized with exemption ENCFF211MHZ bigBed narrowPeak optimal idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF688MSK 539014 ENCODE Processing Pipeline 4df1914dd6297de2f245df00a0ea3f85 https://www.encodeproject.org/files/ENCFF211MHZ/@@download/ENCFF211MHZ.bigBed hg19 archived antibody characterized with exemption ENCFF445RXI bigBed narrowPeak conservative idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF499GYI 437794 ENCODE Processing Pipeline af5da95283f05142fd078003aca16650 https://www.encodeproject.org/files/ENCFF445RXI/@@download/ENCFF445RXI.bigBed hg19 archived antibody characterized with exemption ENCFF688MSK bed narrowPeak optimal idr thresholded peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF040IGJ, ENCFF364YQW, ENCFF920MOI 305755 ENCODE Processing Pipeline b1586dfc4ee3e7a69a6c4677b32b5dfc https://www.encodeproject.org/files/ENCFF688MSK/@@download/ENCFF688MSK.bed.gz hg19 archived antibody characterized with exemption ENCFF939AJS bam unfiltered alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJQ, ENCFF002EJT, ENCFF807MUK 6341841943 ENCODE Processing Pipeline 4edc545f1ac30e35317684805abec4e1 https://www.encodeproject.org/files/ENCFF939AJS/@@download/ENCFF939AJS.bam hg19 released antibody characterized with exemption ENCFF652TCF bam unfiltered alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJL, ENCFF002EJS, ENCFF807MUK 6237271168 ENCODE Processing Pipeline fc22f5ae7c5eb28f7f86c3a2f575b77a https://www.encodeproject.org/files/ENCFF652TCF/@@download/ENCFF652TCF.bam hg19 released antibody characterized with exemption ENCFF002EJL fastq reads ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EJS 2856841524 Michael Snyder, Stanford 8252adeba87de6178e7f16d5950087b8 SRA:SRR6213846 https://www.encodeproject.org/files/ENCFF002EJL/@@download/ENCFF002EJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released antibody characterized with exemption ENCFF002EJQ fastq reads ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EJT 2928518557 Michael Snyder, Stanford 9fc510b7e19278b20c954c90520d073d SRA:SRR6213847 https://www.encodeproject.org/files/ENCFF002EJQ/@@download/ENCFF002EJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released antibody characterized with exemption ENCFF002EJS fastq reads ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJL 2823703712 Michael Snyder, Stanford cb6ed400170c159d471aa898c4b0b271 SRA:SRR6213846 https://www.encodeproject.org/files/ENCFF002EJS/@@download/ENCFF002EJS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released antibody characterized with exemption ENCFF002EJT fastq reads ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EJQ 2900058970 Michael Snyder, Stanford 8ced59f27d8d10770a48363c7906743e SRA:SRR6213847 https://www.encodeproject.org/files/ENCFF002EJT/@@download/ENCFF002EJT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released antibody characterized with exemption ENCFF077LKL bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJL, ENCFF002EJS, ENCFF807MUK 5426634887 ENCODE Processing Pipeline a6c672bb4d719f48629ad87b3589a550 https://www.encodeproject.org/files/ENCFF077LKL/@@download/ENCFF077LKL.bam hg19 released antibody characterized with exemption ENCFF204XJS bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJQ, ENCFF002EJT, ENCFF807MUK 5380722249 ENCODE Processing Pipeline aa88107de96e61c5821435895e4499d8 https://www.encodeproject.org/files/ENCFF204XJS/@@download/ENCFF204XJS.bam hg19 released antibody characterized with exemption ENCFF472CME bigWig signal p-value ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF077LKL, ENCFF321TUP, ENCFF806YIH 1469096114 ENCODE Processing Pipeline 83fb15076153f4f96a3e6d7ac20a2f40 https://www.encodeproject.org/files/ENCFF472CME/@@download/ENCFF472CME.bigWig hg19 released antibody characterized with exemption ENCFF687ZAK bigWig signal p-value ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF077LKL, ENCFF204XJS, ENCFF321TUP, ENCFF806YIH 2180761015 ENCODE Processing Pipeline 95dec53d880f9d2060a22278d37504ea https://www.encodeproject.org/files/ENCFF687ZAK/@@download/ENCFF687ZAK.bigWig hg19 released antibody characterized with exemption ENCFF425FUI bigWig fold change over control ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF077LKL, ENCFF321TUP, ENCFF806YIH 1622359184 ENCODE Processing Pipeline 9487802772bdc6b5c7de44ac37cd813e https://www.encodeproject.org/files/ENCFF425FUI/@@download/ENCFF425FUI.bigWig hg19 released antibody characterized with exemption ENCFF469KPK bigWig fold change over control ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF077LKL, ENCFF204XJS, ENCFF321TUP, ENCFF806YIH 2217171440 ENCODE Processing Pipeline f00a17ee785ee035748bc959a00e7424 https://www.encodeproject.org/files/ENCFF469KPK/@@download/ENCFF469KPK.bigWig hg19 released antibody characterized with exemption ENCFF585XNM bam unfiltered alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJL, ENCFF002EJS, ENCFF643CGH 6249966123 ENCODE Processing Pipeline e0044cb1302633f2b65922fb0b4f17d2 https://www.encodeproject.org/files/ENCFF585XNM/@@download/ENCFF585XNM.bam GRCh38 released antibody characterized with exemption ENCFF928RQP bam unfiltered alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJQ, ENCFF002EJT, ENCFF643CGH 6353901342 ENCODE Processing Pipeline 78ee7db94951281bf42b0ddc3ea259c0 https://www.encodeproject.org/files/ENCFF928RQP/@@download/ENCFF928RQP.bam GRCh38 released antibody characterized with exemption ENCFF647MYR bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJL, ENCFF002EJS, ENCFF643CGH 5435791613 ENCODE Processing Pipeline a300237412101f10ae63e4b692873cd4 https://www.encodeproject.org/files/ENCFF647MYR/@@download/ENCFF647MYR.bam GRCh38 released antibody characterized with exemption ENCFF645HSB bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJQ, ENCFF002EJT, ENCFF643CGH 5389650278 ENCODE Processing Pipeline 4ab39071e58cbbb2dc26ac8fdc1d4c5a https://www.encodeproject.org/files/ENCFF645HSB/@@download/ENCFF645HSB.bam GRCh38 released antibody characterized with exemption ENCFF159QTA bigWig signal p-value ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF647MYR 1436116668 ENCODE Processing Pipeline e6c040037b6666a6723c71bf0d7ba161 https://www.encodeproject.org/files/ENCFF159QTA/@@download/ENCFF159QTA.bigWig GRCh38 released antibody characterized with exemption ENCFF905BRP bigWig signal p-value ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF645HSB 1212467585 ENCODE Processing Pipeline 98fe246325adefcf553ca30e4cff7c8a https://www.encodeproject.org/files/ENCFF905BRP/@@download/ENCFF905BRP.bigWig GRCh38 released antibody characterized with exemption ENCFF904MBV bigWig signal p-value ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF419UIG, ENCFF645HSB, ENCFF647MYR 2150013143 ENCODE Processing Pipeline 22af9ff3633e19fefb8c607113060117 https://www.encodeproject.org/files/ENCFF904MBV/@@download/ENCFF904MBV.bigWig GRCh38 released antibody characterized with exemption ENCFF333VJT bigWig fold change over control ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF647MYR 1654594089 ENCODE Processing Pipeline 7cb5ceb2f24c05e91ee1abaeae8e2975 https://www.encodeproject.org/files/ENCFF333VJT/@@download/ENCFF333VJT.bigWig GRCh38 released antibody characterized with exemption ENCFF018UZY bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF645HSB 5882791 ENCODE Processing Pipeline 3c5be3ea0576efb8effa602cd93459c2 https://www.encodeproject.org/files/ENCFF018UZY/@@download/ENCFF018UZY.bed.gz GRCh38 released antibody characterized with exemption ENCFF481NAI bigBed narrowPeak conservative idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF209WAQ 410068 ENCODE Processing Pipeline a43893ec1ab462737037ef90cc381c77 https://www.encodeproject.org/files/ENCFF481NAI/@@download/ENCFF481NAI.bigBed GRCh38 released antibody characterized with exemption ENCFF967EEA bigWig fold change over control ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF419UIG, ENCFF645HSB, ENCFF647MYR 2184693591 ENCODE Processing Pipeline 30bd204643b6efef1bbd9329fc9a918a https://www.encodeproject.org/files/ENCFF967EEA/@@download/ENCFF967EEA.bigWig GRCh38 released antibody characterized with exemption ENCFF291HWZ bigWig fold change over control ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF645HSB 1215562399 ENCODE Processing Pipeline 37cdb1d434bddfc63e8cf577fd9c4738 https://www.encodeproject.org/files/ENCFF291HWZ/@@download/ENCFF291HWZ.bigWig GRCh38 released antibody characterized with exemption ENCFF649LTU bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF647MYR 6493517 ENCODE Processing Pipeline f0d9673cfb52815612b1611d4b1f8491 https://www.encodeproject.org/files/ENCFF649LTU/@@download/ENCFF649LTU.bed.gz GRCh38 released antibody characterized with exemption ENCFF389XZG bigBed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF649LTU 11515232 ENCODE Processing Pipeline c9ff83ec2a5846da2472dada2532b62d https://www.encodeproject.org/files/ENCFF389XZG/@@download/ENCFF389XZG.bigBed GRCh38 released antibody characterized with exemption ENCFF553TNN bigBed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF004JYI 11469961 ENCODE Processing Pipeline 31e42a999932a0fa5fa32db6f976e876 https://www.encodeproject.org/files/ENCFF553TNN/@@download/ENCFF553TNN.bigBed GRCh38 released antibody characterized with exemption ENCFF004JYI bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF419UIG, ENCFF645HSB, ENCFF647MYR 7172128 ENCODE Processing Pipeline bc1fc6093d84edb3bc483592696de9c8 https://www.encodeproject.org/files/ENCFF004JYI/@@download/ENCFF004JYI.bed.gz GRCh38 released antibody characterized with exemption ENCFF917LMD bigBed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF018UZY 11439938 ENCODE Processing Pipeline 34ac1e76acb7fdec92892f75d3354b11 https://www.encodeproject.org/files/ENCFF917LMD/@@download/ENCFF917LMD.bigBed GRCh38 released antibody characterized with exemption ENCFF209WAQ bed narrowPeak conservative idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF004JYI, ENCFF018UZY, ENCFF419RSJ, ENCFF649LTU 179772 ENCODE Processing Pipeline 81aa8f56a11ebde8574542468d0fbb28 https://www.encodeproject.org/files/ENCFF209WAQ/@@download/ENCFF209WAQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF536SQV bigBed narrowPeak optimal idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF593EOW 467899 ENCODE Processing Pipeline 4ac85a702a133ab896cbd8d8640c18e2 https://www.encodeproject.org/files/ENCFF536SQV/@@download/ENCFF536SQV.bigBed GRCh38 released antibody characterized with exemption ENCFF593EOW bed narrowPeak optimal idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF004JYI, ENCFF018UZY, ENCFF419RSJ, ENCFF649LTU 215931 ENCODE Processing Pipeline 6bb00c0a779e08c9cc9a718db60a6a0c https://www.encodeproject.org/files/ENCFF593EOW/@@download/ENCFF593EOW.bed.gz GRCh38 released antibody characterized with exemption ENCFF348CZP bigWig signal p-value ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF204XJS, ENCFF806YIH 1159252298 ENCODE Processing Pipeline 0fdbad4b995c41582e25f42d1c4314c1 https://www.encodeproject.org/files/ENCFF348CZP/@@download/ENCFF348CZP.bigWig hg19 released antibody characterized with exemption ENCFF389GOZ bigWig fold change over control ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF204XJS, ENCFF806YIH 1190990196 ENCODE Processing Pipeline e9f29146498e1d6ed636004c40c056b6 https://www.encodeproject.org/files/ENCFF389GOZ/@@download/ENCFF389GOZ.bigWig hg19 released antibody characterized with exemption ENCFF735LLC bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF077LKL, ENCFF204XJS, ENCFF321TUP, ENCFF806YIH 7170898 ENCODE Processing Pipeline d7c1408f1bc99052f3a03063c7d67af4 https://www.encodeproject.org/files/ENCFF735LLC/@@download/ENCFF735LLC.bed.gz hg19 released antibody characterized with exemption ENCFF228YLF bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF204XJS, ENCFF806YIH 5877413 ENCODE Processing Pipeline ab86987dfb57c45ac89cb59bc4c6852c https://www.encodeproject.org/files/ENCFF228YLF/@@download/ENCFF228YLF.bed.gz hg19 released antibody characterized with exemption ENCFF892OSN bigBed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 ENCFF228YLF 11420626 ENCODE Processing Pipeline 1a3d8fb1c93c62beaec82da2edbf3ee3 https://www.encodeproject.org/files/ENCFF892OSN/@@download/ENCFF892OSN.bigBed hg19 released antibody characterized with exemption ENCFF016EBF bigBed narrowPeak optimal idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF754GUT 462750 ENCODE Processing Pipeline 4bc0096991faf120a1fa3dcdd49d5562 https://www.encodeproject.org/files/ENCFF016EBF/@@download/ENCFF016EBF.bigBed hg19 released antibody characterized with exemption ENCFF664JOM bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF077LKL, ENCFF321TUP, ENCFF806YIH 6533698 ENCODE Processing Pipeline 8fd2f46b0bf5c1b8d5cd806a36634425 https://www.encodeproject.org/files/ENCFF664JOM/@@download/ENCFF664JOM.bed.gz hg19 released antibody characterized with exemption ENCFF877WWK bigBed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF664JOM 11495515 ENCODE Processing Pipeline b55a783e7e2e21db8aeacbb0ae8972dc https://www.encodeproject.org/files/ENCFF877WWK/@@download/ENCFF877WWK.bigBed hg19 released antibody characterized with exemption ENCFF783XXC bed narrowPeak conservative idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF228YLF, ENCFF664JOM, ENCFF735LLC 178458 ENCODE Processing Pipeline f15cfa1b8a7c76baa16aaca60b9ff1b2 https://www.encodeproject.org/files/ENCFF783XXC/@@download/ENCFF783XXC.bed.gz hg19 released antibody characterized with exemption ENCFF817WJN bigBed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF735LLC 11432383 ENCODE Processing Pipeline 1c69684cbf28965f9b78b56524269c21 https://www.encodeproject.org/files/ENCFF817WJN/@@download/ENCFF817WJN.bigBed hg19 released antibody characterized with exemption ENCFF754GUT bed narrowPeak optimal idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF228YLF, ENCFF664JOM, ENCFF735LLC 215763 ENCODE Processing Pipeline f6f7b983fea0068328111da329526b42 https://www.encodeproject.org/files/ENCFF754GUT/@@download/ENCFF754GUT.bed.gz hg19 released antibody characterized with exemption ENCFF081JLH bigBed narrowPeak conservative idr thresholded peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF783XXC 404744 ENCODE Processing Pipeline 5290b4aea8165920aeea7e87ebc38b1b https://www.encodeproject.org/files/ENCFF081JLH/@@download/ENCFF081JLH.bigBed hg19 released antibody characterized with exemption ENCFF783FYL fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF923XLP 5363253018 Michael Snyder, Stanford c2504194462ca7a4705348ab627ee673 SRA:SRR6214328 https://www.encodeproject.org/files/ENCFF783FYL/@@download/ENCFF783FYL.fastq.gz Illumina HiSeq 4000 /files/ENCFF202OMW/ released mild to moderate bottlenecking, moderate library complexity ENCFF108FHI fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF863MQV 5864015771 Michael Snyder, Stanford 9e160c0931368a06be39c467fe512de0 SRA:SRR6214327 https://www.encodeproject.org/files/ENCFF108FHI/@@download/ENCFF108FHI.fastq.gz Illumina HiSeq 4000 /files/ENCFF829GAK/ released mild to moderate bottlenecking, moderate library complexity ENCFF923XLP fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF783FYL 6012552866 Michael Snyder, Stanford ff00523913aeefd4254eb363670b5955 SRA:SRR6214328 https://www.encodeproject.org/files/ENCFF923XLP/@@download/ENCFF923XLP.fastq.gz Illumina HiSeq 4000 /files/ENCFF349FFX/ released mild to moderate bottlenecking, moderate library complexity ENCFF863MQV fastq reads ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF108FHI 5994809923 Michael Snyder, Stanford ff89492f3616a87c2ff763e7162ad947 SRA:SRR6214327 https://www.encodeproject.org/files/ENCFF863MQV/@@download/ENCFF863MQV.fastq.gz Illumina HiSeq 4000 /files/ENCFF647DBV/ released mild to moderate bottlenecking, moderate library complexity ENCFF906XQL bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF643CGH, ENCFF863MQV 11059835857 ENCODE Processing Pipeline 8ea7f4a6b9cca4c03a5c85301dec3e10 https://www.encodeproject.org/files/ENCFF906XQL/@@download/ENCFF906XQL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF754BHC bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF643CGH, ENCFF863MQV 7619322716 ENCODE Processing Pipeline 53486943c9cd2452f412c764e9a27b56 https://www.encodeproject.org/files/ENCFF754BHC/@@download/ENCFF754BHC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF469MPJ bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF783FYL, ENCFF923XLP 6778413852 ENCODE Processing Pipeline 02511169afe25a93959844f7be551638 https://www.encodeproject.org/files/ENCFF469MPJ/@@download/ENCFF469MPJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF006TBL bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF783FYL, ENCFF923XLP 10205847370 ENCODE Processing Pipeline 1835ecfe56df2f1693729b3919bdff36 https://www.encodeproject.org/files/ENCFF006TBL/@@download/ENCFF006TBL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF737QVI bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF754BHC 2094483007 ENCODE Processing Pipeline 71fe9494cb2c242741073205b45f89a0 https://www.encodeproject.org/files/ENCFF737QVI/@@download/ENCFF737QVI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF362LDM bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF469MPJ, ENCFF666ATR 1441050758 ENCODE Processing Pipeline a7dd6446e7c526a7d8842827f98f12e1 https://www.encodeproject.org/files/ENCFF362LDM/@@download/ENCFF362LDM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF527IDU bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF322NTO, ENCFF469MPJ, ENCFF666ATR, ENCFF754BHC 2259844044 ENCODE Processing Pipeline f2ffda80d8d0049f7536b1ac5aa0f567 https://www.encodeproject.org/files/ENCFF527IDU/@@download/ENCFF527IDU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF580CHX bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF754BHC 2220566625 ENCODE Processing Pipeline e52b6c5eba276b396386dcbd322e934e https://www.encodeproject.org/files/ENCFF580CHX/@@download/ENCFF580CHX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF986WGR bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF469MPJ, ENCFF666ATR 1891569792 ENCODE Processing Pipeline 169ebf529040b025fd596074b703293b https://www.encodeproject.org/files/ENCFF986WGR/@@download/ENCFF986WGR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF291BKK bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF322NTO, ENCFF469MPJ, ENCFF666ATR, ENCFF754BHC 4180871962 ENCODE Processing Pipeline 32a8304ebeb7121f05100fc554077356 https://www.encodeproject.org/files/ENCFF291BKK/@@download/ENCFF291BKK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF948DZI bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF322NTO, ENCFF666ATR, ENCFF754BHC 7136961 ENCODE Processing Pipeline d42a88adf4e497c57ca172538ce5b39f https://www.encodeproject.org/files/ENCFF948DZI/@@download/ENCFF948DZI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF770DUQ bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF469MPJ, ENCFF666ATR 7122491 ENCODE Processing Pipeline fda11838249361742ed42137a14fbcb0 https://www.encodeproject.org/files/ENCFF770DUQ/@@download/ENCFF770DUQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF699UQY bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF322NTO, ENCFF469MPJ, ENCFF666ATR, ENCFF754BHC 7221494 ENCODE Processing Pipeline e62cd6fa8dbe8167974bebb8b7150751 https://www.encodeproject.org/files/ENCFF699UQY/@@download/ENCFF699UQY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF369DTJ bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF948DZI 10730583 ENCODE Processing Pipeline 2999132ba51acd469369d897e6e71566 https://www.encodeproject.org/files/ENCFF369DTJ/@@download/ENCFF369DTJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF323OZX bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF770DUQ 13101043 ENCODE Processing Pipeline e5ad8c13b2af0744cfba53574a95b9d6 https://www.encodeproject.org/files/ENCFF323OZX/@@download/ENCFF323OZX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF990MTR bed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF699UQY, ENCFF770DUQ, ENCFF948DZI 105645 ENCODE Processing Pipeline e76a1d445e443d7ffc70c66b50bf07b0 https://www.encodeproject.org/files/ENCFF990MTR/@@download/ENCFF990MTR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF220KAF bigBed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF990MTR 257557 ENCODE Processing Pipeline 04ced39c443e70868cd3c2f518250bdf https://www.encodeproject.org/files/ENCFF220KAF/@@download/ENCFF220KAF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF812KOO bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF699UQY 12897056 ENCODE Processing Pipeline 2a0f7202fd30d91667301aa7c00a6801 https://www.encodeproject.org/files/ENCFF812KOO/@@download/ENCFF812KOO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF132EMG bigBed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF578XIP 240906 ENCODE Processing Pipeline dcd31ffad092896297fe65454f12ac53 https://www.encodeproject.org/files/ENCFF132EMG/@@download/ENCFF132EMG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF578XIP bed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF699UQY, ENCFF770DUQ, ENCFF948DZI 95624 ENCODE Processing Pipeline 21175c8d5c1532bf591c295aaa97d40d https://www.encodeproject.org/files/ENCFF578XIP/@@download/ENCFF578XIP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF403HEO bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF807MUK, ENCFF863MQV 11051439427 ENCODE Processing Pipeline e02a4df9bdaac067567c87ab13e253d0 https://www.encodeproject.org/files/ENCFF403HEO/@@download/ENCFF403HEO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF486NOF bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF783FYL, ENCFF807MUK, ENCFF923XLP 6762554719 ENCODE Processing Pipeline 4f98ddf13fb98db928c4cbb41c1fcbf3 https://www.encodeproject.org/files/ENCFF486NOF/@@download/ENCFF486NOF.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF343TNY bam unfiltered alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF783FYL, ENCFF807MUK, ENCFF923XLP 10200842882 ENCODE Processing Pipeline 5f9400f83aa3dbc499eaa82a41618c89 https://www.encodeproject.org/files/ENCFF343TNY/@@download/ENCFF343TNY.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF794TKO bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF807MUK, ENCFF863MQV 7599465720 ENCODE Processing Pipeline 9c2f0abb8e648c335c7cc2c703d6c4d6 https://www.encodeproject.org/files/ENCFF794TKO/@@download/ENCFF794TKO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF013LVV bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 2070325792 ENCODE Processing Pipeline 2f2d05639d303c35e866dfe33de23be3 https://www.encodeproject.org/files/ENCFF013LVV/@@download/ENCFF013LVV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF464PUE bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 1432505481 ENCODE Processing Pipeline 91db0833df756a3f1fee22ac1a6db70e https://www.encodeproject.org/files/ENCFF464PUE/@@download/ENCFF464PUE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF291AYM bed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF014VXF, ENCFF348PZF, ENCFF870DSA 92017 ENCODE Processing Pipeline 494ab95cfe23df4bd90c90c2603c5a4f https://www.encodeproject.org/files/ENCFF291AYM/@@download/ENCFF291AYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF843ZBP bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF870DSA 13092323 ENCODE Processing Pipeline b4c3573180b49e1a3781fb2667050f69 https://www.encodeproject.org/files/ENCFF843ZBP/@@download/ENCFF843ZBP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF531ZQX bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF348PZF 12866716 ENCODE Processing Pipeline 02d0104bb1e3905bfdca9b6b048c17d3 https://www.encodeproject.org/files/ENCFF531ZQX/@@download/ENCFF531ZQX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF266WRI bigBed narrowPeak conservative idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF291AYM 230351 ENCODE Processing Pipeline 8dfb0246ceb8325c7a22fd20b27504d7 https://www.encodeproject.org/files/ENCFF266WRI/@@download/ENCFF266WRI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF016FYZ bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 1877883878 ENCODE Processing Pipeline e7b27f22d9230e7bcda44d34b3d722c7 https://www.encodeproject.org/files/ENCFF016FYZ/@@download/ENCFF016FYZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF285JUZ bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF486NOF, ENCFF592WAL, ENCFF794TKO, ENCFF901CND 4203159773 ENCODE Processing Pipeline 96e774027053d7b227be9e6dcc822fc5 https://www.encodeproject.org/files/ENCFF285JUZ/@@download/ENCFF285JUZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF014VXF bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 7125011 ENCODE Processing Pipeline 2c378fb23bfd4dd50251096f46e8c02a https://www.encodeproject.org/files/ENCFF014VXF/@@download/ENCFF014VXF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF348PZF bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF486NOF, ENCFF592WAL, ENCFF794TKO, ENCFF901CND 7201771 ENCODE Processing Pipeline 07e8abba768e3b1e2838b4b6fbae1f5e https://www.encodeproject.org/files/ENCFF348PZF/@@download/ENCFF348PZF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF612SAZ bigBed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF014VXF 10707159 ENCODE Processing Pipeline 9f49cedb108d9ed1044d54951918502b https://www.encodeproject.org/files/ENCFF612SAZ/@@download/ENCFF612SAZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF790HQV bigWig signal p-value ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF486NOF, ENCFF592WAL, ENCFF794TKO, ENCFF901CND 2267136318 ENCODE Processing Pipeline eb7b169a436024696509162e8ef103ce https://www.encodeproject.org/files/ENCFF790HQV/@@download/ENCFF790HQV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF864JSL bigBed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF980KSV 246383 ENCODE Processing Pipeline 61daa07edd292414487f4d6c9b5f24c4 https://www.encodeproject.org/files/ENCFF864JSL/@@download/ENCFF864JSL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF636NOW bigWig fold change over control ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 2192035687 ENCODE Processing Pipeline d8ed1e716252de8ba88add75c1957137 https://www.encodeproject.org/files/ENCFF636NOW/@@download/ENCFF636NOW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF870DSA bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 7089816 ENCODE Processing Pipeline d154c929c75e48d94a7457c55991af23 https://www.encodeproject.org/files/ENCFF870DSA/@@download/ENCFF870DSA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF980KSV bed narrowPeak optimal idr thresholded peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF014VXF, ENCFF348PZF, ENCFF870DSA 101906 ENCODE Processing Pipeline ceed3be232cda7bc789bc4f322683f0f https://www.encodeproject.org/files/ENCFF980KSV/@@download/ENCFF980KSV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF629YQE fastq reads ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 single-ended 1582817319 Bradley Bernstein, Broad 0e46b7e6cc035fe5548f8e836a7610ec https://www.encodeproject.org/files/ENCFF629YQE/@@download/ENCFF629YQE.fastq.gz Illumina HiSeq 2500 /files/ENCFF093MCZ/ released mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF101CQF fastq reads ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 1 76 single-ended 1616648833 Bradley Bernstein, Broad 8b924820361f7c6f4853b8fcad4f7662 https://www.encodeproject.org/files/ENCFF101CQF/@@download/ENCFF101CQF.fastq.gz Illumina HiSeq 2500 /files/ENCFF093MCZ/ released mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF655GMJ fastq reads ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 76 paired-ended 1 ENCFF141TVK 1852990939 Bradley Bernstein, Broad b8dbe19e79ad63f460f893c5e7e2ea9b https://www.encodeproject.org/files/ENCFF655GMJ/@@download/ENCFF655GMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF093MCZ/ released mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, inconsistent control run_type biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF141TVK fastq reads ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 1 76 paired-ended 2 ENCFF655GMJ 1847164704 Bradley Bernstein, Broad b66eb6e11d857718875546d91c1823eb https://www.encodeproject.org/files/ENCFF141TVK/@@download/ENCFF141TVK.fastq.gz Illumina HiSeq 2000 /files/ENCFF093MCZ/ released mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, inconsistent control run_type biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF933BLG bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF101CQF, ENCFF629YQE, ENCFF807MUK 1363362824 ENCODE Processing Pipeline 3d21138eb5d91e99ab3c99cda0bd8035 https://www.encodeproject.org/files/ENCFF933BLG/@@download/ENCFF933BLG.bam hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF172VYM bam unfiltered alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF643CGH, ENCFF655GMJ 1334565730 ENCODE Processing Pipeline 5310f0ce133c002f1e23f3f96e4ccab4 https://www.encodeproject.org/files/ENCFF172VYM/@@download/ENCFF172VYM.bam GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF047JTZ bam unfiltered alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF655GMJ, ENCFF807MUK 1329614083 ENCODE Processing Pipeline 2931c045b13341a9777055ed04d874a5 https://www.encodeproject.org/files/ENCFF047JTZ/@@download/ENCFF047JTZ.bam hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF836IWS bam unfiltered alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF101CQF, ENCFF629YQE, ENCFF643CGH 2051176560 ENCODE Processing Pipeline 238126e713f4cbea7e404a844946ef41 https://www.encodeproject.org/files/ENCFF836IWS/@@download/ENCFF836IWS.bam GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF753PJC bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF655GMJ, ENCFF807MUK 915842398 ENCODE Processing Pipeline 1567fa06cc6a21fae2b7c3cb16ce0db8 https://www.encodeproject.org/files/ENCFF753PJC/@@download/ENCFF753PJC.bam hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF269EGP bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF643CGH, ENCFF655GMJ 915320513 ENCODE Processing Pipeline a7b433e1cd306ff193a87a9c9047b813 https://www.encodeproject.org/files/ENCFF269EGP/@@download/ENCFF269EGP.bam GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF533WXK bam unfiltered alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF101CQF, ENCFF629YQE, ENCFF807MUK 2037389041 ENCODE Processing Pipeline 8a260cfda374e1434452d1ed3debeb55 https://www.encodeproject.org/files/ENCFF533WXK/@@download/ENCFF533WXK.bam hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF975PSG bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF101CQF, ENCFF629YQE, ENCFF643CGH 1362891560 ENCODE Processing Pipeline 022f5efa61eaa00a92224b711207ae12 https://www.encodeproject.org/files/ENCFF975PSG/@@download/ENCFF975PSG.bam GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF824PBX bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF574DLY, ENCFF753PJC, ENCFF933BLG 6231975 ENCODE Processing Pipeline 18fe4c48d49b3d307e05505e25c415a9 https://www.encodeproject.org/files/ENCFF824PBX/@@download/ENCFF824PBX.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF278JNE bigBed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF824PBX 13150665 ENCODE Processing Pipeline b2d2fb11caccb15956d587061761da8c https://www.encodeproject.org/files/ENCFF278JNE/@@download/ENCFF278JNE.bigBed hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF903AYX bed narrowPeak conservative idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF796TTQ, ENCFF824PBX, ENCFF895NJW 30748 ENCODE Processing Pipeline a9bb78fddec30d2fa4f9b830499722a4 https://www.encodeproject.org/files/ENCFF903AYX/@@download/ENCFF903AYX.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF756HSC bed narrowPeak optimal idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF796TTQ, ENCFF824PBX, ENCFF895NJW 33287 ENCODE Processing Pipeline 26be33f99880f04312294e96795f82df https://www.encodeproject.org/files/ENCFF756HSC/@@download/ENCFF756HSC.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF245YND bigWig signal p-value ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF574DLY, ENCFF933BLG 519416029 ENCODE Processing Pipeline c698bea1db4c9ca4e2a41bf4222523da https://www.encodeproject.org/files/ENCFF245YND/@@download/ENCFF245YND.bigWig hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF500RVU bigWig fold change over control ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF574DLY, ENCFF933BLG 664078873 ENCODE Processing Pipeline c102c402c83d0467e9f49a28de9692b7 https://www.encodeproject.org/files/ENCFF500RVU/@@download/ENCFF500RVU.bigWig hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF801NIR bigWig signal p-value ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF574DLY, ENCFF753PJC 445604840 ENCODE Processing Pipeline 86d61c3a489216ad1d5612cfa833830e https://www.encodeproject.org/files/ENCFF801NIR/@@download/ENCFF801NIR.bigWig hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF033OVD bigWig signal p-value ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF574DLY, ENCFF753PJC, ENCFF933BLG 533115971 ENCODE Processing Pipeline d91fcf1ca5daa9ffef393494bd542c6e https://www.encodeproject.org/files/ENCFF033OVD/@@download/ENCFF033OVD.bigWig hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF253TFB bigWig fold change over control ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF574DLY, ENCFF753PJC 422566566 ENCODE Processing Pipeline 348bb2ef8db922dea5a0091fc78997ab https://www.encodeproject.org/files/ENCFF253TFB/@@download/ENCFF253TFB.bigWig hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF129YYO bigWig fold change over control ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF574DLY, ENCFF753PJC, ENCFF933BLG 895359877 ENCODE Processing Pipeline 836485b841b901e4505357e49d918962 https://www.encodeproject.org/files/ENCFF129YYO/@@download/ENCFF129YYO.bigWig hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF895NJW bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF574DLY, ENCFF933BLG 5506392 ENCODE Processing Pipeline b52f16ff97121cecc8a753adfec856fc https://www.encodeproject.org/files/ENCFF895NJW/@@download/ENCFF895NJW.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF796TTQ bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF574DLY, ENCFF753PJC 5214941 ENCODE Processing Pipeline 18ff675f5cd6f15f3b9f9575aaf4debd https://www.encodeproject.org/files/ENCFF796TTQ/@@download/ENCFF796TTQ.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF743HRD bigBed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF895NJW 13290745 ENCODE Processing Pipeline a04907dd21e932f54a270675d583ab34 https://www.encodeproject.org/files/ENCFF743HRD/@@download/ENCFF743HRD.bigBed hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF535LMZ bigBed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF796TTQ 13116428 ENCODE Processing Pipeline d9a6f6b2805c9b6048b85b92db66a919 https://www.encodeproject.org/files/ENCFF535LMZ/@@download/ENCFF535LMZ.bigBed hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF806RAE bigBed narrowPeak conservative idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF903AYX 119686 ENCODE Processing Pipeline 3c42d2f58a26ccfd71fc68291f6dcaa0 https://www.encodeproject.org/files/ENCFF806RAE/@@download/ENCFF806RAE.bigBed hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF041TFZ bigBed narrowPeak optimal idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF756HSC 123854 ENCODE Processing Pipeline 6529e8c5b3268b2596e39ba9c89005ec https://www.encodeproject.org/files/ENCFF041TFZ/@@download/ENCFF041TFZ.bigBed hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF937ANB bigWig fold change over control ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF269EGP, ENCFF691EEI 427771498 ENCODE Processing Pipeline 63b30df3e72ff9358eaca1f806e700fe https://www.encodeproject.org/files/ENCFF937ANB/@@download/ENCFF937ANB.bigWig GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF947VIT bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF691EEI, ENCFF975PSG 5476759 ENCODE Processing Pipeline 8124b58fc23a0fe030bbaea2be74104c https://www.encodeproject.org/files/ENCFF947VIT/@@download/ENCFF947VIT.bed.gz GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF115VOD bigBed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF947VIT 13308288 ENCODE Processing Pipeline 3c004aca17dfbacdd9d44378ae56f616 https://www.encodeproject.org/files/ENCFF115VOD/@@download/ENCFF115VOD.bigBed GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF385BQM bigWig fold change over control ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF691EEI, ENCFF975PSG 670266438 ENCODE Processing Pipeline a66c790261a1456b45cbfc7fbb9c268d https://www.encodeproject.org/files/ENCFF385BQM/@@download/ENCFF385BQM.bigWig GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF642TXF bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF269EGP, ENCFF691EEI, ENCFF975PSG 6173477 ENCODE Processing Pipeline 2b64e486b5edb54033f75089da742302 https://www.encodeproject.org/files/ENCFF642TXF/@@download/ENCFF642TXF.bed.gz GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF995MRP bed narrowPeak optimal idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF642TXF, ENCFF947VIT, ENCFF955XPF 31848 ENCODE Processing Pipeline e35f94ce9203c0a1e6471d1df7b6f824 https://www.encodeproject.org/files/ENCFF995MRP/@@download/ENCFF995MRP.bed.gz GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF850RAU bigWig fold change over control ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF269EGP, ENCFF691EEI, ENCFF975PSG 894238551 ENCODE Processing Pipeline 1a563f09dc39af39e16628799b9788de https://www.encodeproject.org/files/ENCFF850RAU/@@download/ENCFF850RAU.bigWig GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF991RFM bigWig signal p-value ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF691EEI, ENCFF975PSG 526589893 ENCODE Processing Pipeline 84cd64e4b69fedc52381838fdd6b3d74 https://www.encodeproject.org/files/ENCFF991RFM/@@download/ENCFF991RFM.bigWig GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF468VNN bigWig signal p-value ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF269EGP, ENCFF691EEI 459084308 ENCODE Processing Pipeline 7c4eefdc383ba897674a49168b63dfdb https://www.encodeproject.org/files/ENCFF468VNN/@@download/ENCFF468VNN.bigWig GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF417PLL bigBed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF955XPF 13115806 ENCODE Processing Pipeline 19eb77cc6e64cb58e16fb5694d5ae457 https://www.encodeproject.org/files/ENCFF417PLL/@@download/ENCFF417PLL.bigBed GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF527QNP bigBed narrowPeak optimal idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF995MRP 121707 ENCODE Processing Pipeline d4a0b2c9db63863efee26d50e64b7d51 https://www.encodeproject.org/files/ENCFF527QNP/@@download/ENCFF527QNP.bigBed GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF201LBO bigWig signal p-value ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF269EGP, ENCFF691EEI, ENCFF975PSG 526232984 ENCODE Processing Pipeline e782f070b3fd75cf0ff50a51c681aa76 https://www.encodeproject.org/files/ENCFF201LBO/@@download/ENCFF201LBO.bigWig GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF955XPF bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF269EGP, ENCFF691EEI 5210037 ENCODE Processing Pipeline 2eb09052c932050c88a0af94da7d5bb2 https://www.encodeproject.org/files/ENCFF955XPF/@@download/ENCFF955XPF.bed.gz GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF293VBW bigBed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF642TXF 13144014 ENCODE Processing Pipeline e02b0104e5bf177d883721b4bef2e507 https://www.encodeproject.org/files/ENCFF293VBW/@@download/ENCFF293VBW.bigBed GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF565TOE bed narrowPeak conservative idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF642TXF, ENCFF947VIT, ENCFF955XPF 30656 ENCODE Processing Pipeline 0aaba2eedb6185bc30bd8ecaa6d8bca2 https://www.encodeproject.org/files/ENCFF565TOE/@@download/ENCFF565TOE.bed.gz GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF911IZY bigBed narrowPeak conservative idr thresholded peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1, 2 ENCFF565TOE 119316 ENCODE Processing Pipeline 6b480f868f7f47a6f280282e9dc128eb https://www.encodeproject.org/files/ENCFF911IZY/@@download/ENCFF911IZY.bigBed GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF793LFB bam unfiltered alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 100 ENCFF126ENC, ENCFF198XWC, ENCFF807MUK 5090548005 ENCODE Processing Pipeline 2e2cbb6cfb072bf2e720df5f5b6885a0 https://www.encodeproject.org/files/ENCFF793LFB/@@download/ENCFF793LFB.bam hg19 released mild to moderate bottlenecking ENCFF463GZS bam unfiltered alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 100 ENCFF109UIV, ENCFF748SHJ, ENCFF807MUK 5958324744 ENCODE Processing Pipeline b72ebe5d3e8f1be8d4b5d0cb223daec7 https://www.encodeproject.org/files/ENCFF463GZS/@@download/ENCFF463GZS.bam hg19 released mild to moderate bottlenecking ENCFF109UIV fastq reads ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 1 100 paired-ended 1 ENCFF748SHJ 2765280401 Michael Snyder, Stanford fe0fa0fc870f54a9b60aba19dfa639ac SRA:SRR5111203 https://www.encodeproject.org/files/ENCFF109UIV/@@download/ENCFF109UIV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF126ENC fastq reads ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 1 100 paired-ended 1 ENCFF198XWC 2378388851 Michael Snyder, Stanford d63304a5063ab9acb129a979ad300974 SRA:SRR5111202 https://www.encodeproject.org/files/ENCFF126ENC/@@download/ENCFF126ENC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF748SHJ fastq reads ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 1 100 paired-ended 2 ENCFF109UIV 2807876824 Michael Snyder, Stanford 003ab1f6dccb228e161f1e33383aa803 SRA:SRR5111203 https://www.encodeproject.org/files/ENCFF748SHJ/@@download/ENCFF748SHJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF198XWC fastq reads ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 1 100 paired-ended 2 ENCFF126ENC 2421294524 Michael Snyder, Stanford f529ca99c1dcc0b6daf763ba0b7b28e7 SRA:SRR5111202 https://www.encodeproject.org/files/ENCFF198XWC/@@download/ENCFF198XWC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF367QVT bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 100 ENCFF109UIV, ENCFF748SHJ, ENCFF807MUK 4809740889 ENCODE Processing Pipeline 1200d62c19cc16131d98b8dd15321260 https://www.encodeproject.org/files/ENCFF367QVT/@@download/ENCFF367QVT.bam hg19 released mild to moderate bottlenecking ENCFF518IYV bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 100 ENCFF126ENC, ENCFF198XWC, ENCFF807MUK 3934006731 ENCODE Processing Pipeline 9fc1d99c720498045a1f4b29616e10b0 https://www.encodeproject.org/files/ENCFF518IYV/@@download/ENCFF518IYV.bam hg19 released mild to moderate bottlenecking ENCFF438DIL bigWig signal p-value ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF367QVT, ENCFF581ZJL 1050159733 ENCODE Processing Pipeline 89486af8ac4c2ae6927ec09533394fdc https://www.encodeproject.org/files/ENCFF438DIL/@@download/ENCFF438DIL.bigWig hg19 released mild to moderate bottlenecking ENCFF413ZGR bigWig fold change over control ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF367QVT, ENCFF581ZJL 1313908816 ENCODE Processing Pipeline e521162ba64e44f725bd3d9e68470edb https://www.encodeproject.org/files/ENCFF413ZGR/@@download/ENCFF413ZGR.bigWig hg19 released mild to moderate bottlenecking ENCFF636HGA bam unfiltered alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 100 ENCFF126ENC, ENCFF198XWC, ENCFF643CGH 5093911694 ENCODE Processing Pipeline bab1d53cab57e583f2e4021e2fdd18ad https://www.encodeproject.org/files/ENCFF636HGA/@@download/ENCFF636HGA.bam GRCh38 released mild to moderate bottlenecking ENCFF686XTG bam unfiltered alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 100 ENCFF109UIV, ENCFF643CGH, ENCFF748SHJ 5963440427 ENCODE Processing Pipeline d7d38507cb214009532f414a61c1ccd5 https://www.encodeproject.org/files/ENCFF686XTG/@@download/ENCFF686XTG.bam GRCh38 released mild to moderate bottlenecking ENCFF928JGK bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 100 ENCFF126ENC, ENCFF198XWC, ENCFF643CGH 3935894236 ENCODE Processing Pipeline 7ae2dc10c5beb475000008a4c3a6b322 https://www.encodeproject.org/files/ENCFF928JGK/@@download/ENCFF928JGK.bam GRCh38 released mild to moderate bottlenecking ENCFF108SDD bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 100 ENCFF109UIV, ENCFF643CGH, ENCFF748SHJ 4812397502 ENCODE Processing Pipeline 8ac2a44801bcc9307696b6f7546bdd11 https://www.encodeproject.org/files/ENCFF108SDD/@@download/ENCFF108SDD.bam GRCh38 released mild to moderate bottlenecking ENCFF603ZCF bigWig signal p-value ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF108SDD, ENCFF910IKB 1128969630 ENCODE Processing Pipeline a72d53deae43c593f66ffe448d465dec https://www.encodeproject.org/files/ENCFF603ZCF/@@download/ENCFF603ZCF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF895WHB bigWig signal p-value ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF227IZS, ENCFF928JGK 1106776579 ENCODE Processing Pipeline 562b3b3b392b5f8382c778949dcd5a55 https://www.encodeproject.org/files/ENCFF895WHB/@@download/ENCFF895WHB.bigWig GRCh38 released mild to moderate bottlenecking ENCFF312OBW bigWig signal p-value ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF108SDD, ENCFF227IZS, ENCFF910IKB, ENCFF928JGK 2009411669 ENCODE Processing Pipeline 85c7d000c3a344783ebe84c98242cdd3 https://www.encodeproject.org/files/ENCFF312OBW/@@download/ENCFF312OBW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF329BNT bigWig fold change over control ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF108SDD, ENCFF910IKB 1320936190 ENCODE Processing Pipeline c7eb59baebe762f9b3fdf96e081de5e9 https://www.encodeproject.org/files/ENCFF329BNT/@@download/ENCFF329BNT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF878AJY bigWig fold change over control ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF227IZS, ENCFF928JGK 1142144638 ENCODE Processing Pipeline 05d47de16c124a8fa3243ee8887658ce https://www.encodeproject.org/files/ENCFF878AJY/@@download/ENCFF878AJY.bigWig GRCh38 released mild to moderate bottlenecking ENCFF981KCA bigWig fold change over control ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF108SDD, ENCFF227IZS, ENCFF910IKB, ENCFF928JGK 2156741874 ENCODE Processing Pipeline 25fd8203425d4711ad4baed99ebde67d https://www.encodeproject.org/files/ENCFF981KCA/@@download/ENCFF981KCA.bigWig GRCh38 released mild to moderate bottlenecking ENCFF724DTR bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF108SDD, ENCFF910IKB 6901725 ENCODE Processing Pipeline 7c41264509610d4941bd8759027abbf5 https://www.encodeproject.org/files/ENCFF724DTR/@@download/ENCFF724DTR.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF532BNS bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF227IZS, ENCFF928JGK 6785115 ENCODE Processing Pipeline 7f9a2ad7d8e3dda51b9785da719d52da https://www.encodeproject.org/files/ENCFF532BNS/@@download/ENCFF532BNS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF776GYC bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF108SDD, ENCFF227IZS, ENCFF910IKB, ENCFF928JGK 7247466 ENCODE Processing Pipeline cea8c8b2355862e17df25703e2c6b959 https://www.encodeproject.org/files/ENCFF776GYC/@@download/ENCFF776GYC.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF169AAM bigBed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF724DTR 13139138 ENCODE Processing Pipeline 689cfef6ed1cc827f565751fb928f67f https://www.encodeproject.org/files/ENCFF169AAM/@@download/ENCFF169AAM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF268ESV bigBed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF532BNS 13148851 ENCODE Processing Pipeline 7004fc8d0ad2b6d37ce50d0e79dfdcb2 https://www.encodeproject.org/files/ENCFF268ESV/@@download/ENCFF268ESV.bigBed GRCh38 released mild to moderate bottlenecking ENCFF383PUK bigBed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF776GYC 12967854 ENCODE Processing Pipeline 7b3ac5df45a91e668b6c7d727c792a9e https://www.encodeproject.org/files/ENCFF383PUK/@@download/ENCFF383PUK.bigBed GRCh38 released mild to moderate bottlenecking ENCFF805MAQ bed narrowPeak conservative idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF532BNS, ENCFF724DTR, ENCFF776GYC 148058 ENCODE Processing Pipeline ac2f0694d1ab02bcf6beefcc7853aea6 https://www.encodeproject.org/files/ENCFF805MAQ/@@download/ENCFF805MAQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF972IWS bigBed narrowPeak conservative idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF805MAQ 365802 ENCODE Processing Pipeline dd0b4f5e7b4d599684abd7dd6c572aba https://www.encodeproject.org/files/ENCFF972IWS/@@download/ENCFF972IWS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF447FIO bed narrowPeak optimal idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF532BNS, ENCFF724DTR, ENCFF776GYC 216862 ENCODE Processing Pipeline 94c5616daeacc3b7d0b525da033c9f7a https://www.encodeproject.org/files/ENCFF447FIO/@@download/ENCFF447FIO.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF837SJZ bigBed narrowPeak optimal idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF447FIO 480874 ENCODE Processing Pipeline a0b0023fb0e05664194bc16634ddbe0a https://www.encodeproject.org/files/ENCFF837SJZ/@@download/ENCFF837SJZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF011UZZ bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF367QVT, ENCFF581ZJL 6897052 ENCODE Processing Pipeline 75f43cabef1cec46da521df4ee68fd85 https://www.encodeproject.org/files/ENCFF011UZZ/@@download/ENCFF011UZZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF071HZE bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF051LWI, ENCFF367QVT, ENCFF518IYV, ENCFF581ZJL 7246665 ENCODE Processing Pipeline 8d61e3167b86dd42914539aae5dd80fe https://www.encodeproject.org/files/ENCFF071HZE/@@download/ENCFF071HZE.bed.gz hg19 released mild to moderate bottlenecking ENCFF706IXI bigBed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF011UZZ 13127658 ENCODE Processing Pipeline 7881e378c8657f22ba21af530a4f82dd https://www.encodeproject.org/files/ENCFF706IXI/@@download/ENCFF706IXI.bigBed hg19 released mild to moderate bottlenecking ENCFF546RMM bigWig signal p-value ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF518IYV 1104447966 ENCODE Processing Pipeline 2df040b0a81e342b14787b4f5ef5c849 https://www.encodeproject.org/files/ENCFF546RMM/@@download/ENCFF546RMM.bigWig hg19 released mild to moderate bottlenecking ENCFF755QIR bigWig signal p-value ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF051LWI, ENCFF367QVT, ENCFF518IYV, ENCFF581ZJL 2081404664 ENCODE Processing Pipeline f31a1c35a227bf8d5e381fa792d8d7e1 https://www.encodeproject.org/files/ENCFF755QIR/@@download/ENCFF755QIR.bigWig hg19 released mild to moderate bottlenecking ENCFF459CML bigBed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF652WXC 13134097 ENCODE Processing Pipeline aa468e2efa67c678899c684a1de3a316 https://www.encodeproject.org/files/ENCFF459CML/@@download/ENCFF459CML.bigBed hg19 released mild to moderate bottlenecking ENCFF521JOW bed narrowPeak conservative idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF001TDO, ENCFF011UZZ, ENCFF071HZE, ENCFF652WXC 146916 ENCODE Processing Pipeline e6a7061337af685721735a2231aaa57e https://www.encodeproject.org/files/ENCFF521JOW/@@download/ENCFF521JOW.bed.gz hg19 released mild to moderate bottlenecking ENCFF186OCZ bigWig fold change over control ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF051LWI, ENCFF367QVT, ENCFF518IYV, ENCFF581ZJL 2179445874 ENCODE Processing Pipeline 01fb6148e4ebbbb49e1c4e38bf82e1ea https://www.encodeproject.org/files/ENCFF186OCZ/@@download/ENCFF186OCZ.bigWig hg19 released mild to moderate bottlenecking ENCFF746EXU bigWig fold change over control ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF518IYV 1121988294 ENCODE Processing Pipeline 6da7d5784448bfbb827f35453ce1910d https://www.encodeproject.org/files/ENCFF746EXU/@@download/ENCFF746EXU.bigWig hg19 released mild to moderate bottlenecking ENCFF652WXC bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF518IYV 6775311 ENCODE Processing Pipeline 255864953a6693c48e10c5c5811564d7 https://www.encodeproject.org/files/ENCFF652WXC/@@download/ENCFF652WXC.bed.gz hg19 released mild to moderate bottlenecking ENCFF183AJH bigBed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF071HZE 12959079 ENCODE Processing Pipeline 7ef3e03361e5284d0f2a4f251f517bc6 https://www.encodeproject.org/files/ENCFF183AJH/@@download/ENCFF183AJH.bigBed hg19 released mild to moderate bottlenecking ENCFF507MGL bed narrowPeak optimal idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF001TDO, ENCFF011UZZ, ENCFF071HZE, ENCFF652WXC 214239 ENCODE Processing Pipeline 5840c9b0b65a89375f82d3cdf94ec1f5 https://www.encodeproject.org/files/ENCFF507MGL/@@download/ENCFF507MGL.bed.gz hg19 released mild to moderate bottlenecking ENCFF322VPZ bigBed narrowPeak conservative idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF521JOW 361865 ENCODE Processing Pipeline a3a5d9b66d866b3f219ac2ee9f343eff https://www.encodeproject.org/files/ENCFF322VPZ/@@download/ENCFF322VPZ.bigBed hg19 released mild to moderate bottlenecking ENCFF504CGI bigBed narrowPeak optimal idr thresholded peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1, 2 ENCFF507MGL 475020 ENCODE Processing Pipeline 81bf08a0a5ca7bd30c8141fc3e1aaf49 https://www.encodeproject.org/files/ENCFF504CGI/@@download/ENCFF504CGI.bigBed hg19 released mild to moderate bottlenecking ENCFF439BDU fastq reads ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF233XOC 2033982930 Michael Snyder, Stanford 56deecf9ce13a30569c79a7df7b5dea2 SRA:SRR6214346 https://www.encodeproject.org/files/ENCFF439BDU/@@download/ENCFF439BDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF140LSM fastq reads ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF120ALM 1633173654 Michael Snyder, Stanford 3fef6abf48e2d4e6eabba79015746218 SRA:SRR6214345 https://www.encodeproject.org/files/ENCFF140LSM/@@download/ENCFF140LSM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF233XOC fastq reads ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF439BDU 2092485171 Michael Snyder, Stanford 994fbd11ccdb684e4d803f86c70a11ea SRA:SRR6214346 https://www.encodeproject.org/files/ENCFF233XOC/@@download/ENCFF233XOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF120ALM fastq reads ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF140LSM 1687127438 Michael Snyder, Stanford 53ae5e1d8344a9db3e0de9fe40560548 SRA:SRR6214345 https://www.encodeproject.org/files/ENCFF120ALM/@@download/ENCFF120ALM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF194ECV bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF120ALM, ENCFF140LSM, ENCFF807MUK 2916995781 ENCODE Processing Pipeline fe96a4a74d623d12ecbe40c2f67c8392 https://www.encodeproject.org/files/ENCFF194ECV/@@download/ENCFF194ECV.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF148ROD bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF233XOC, ENCFF439BDU, ENCFF807MUK 3860258647 ENCODE Processing Pipeline 6241195932b68086a9d2acd99b407f84 https://www.encodeproject.org/files/ENCFF148ROD/@@download/ENCFF148ROD.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF729VGH bigWig signal p-value ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF194ECV, ENCFF583FAG 812493054 ENCODE Processing Pipeline 85c90f79c4431c9f3057065c923414ae https://www.encodeproject.org/files/ENCFF729VGH/@@download/ENCFF729VGH.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF095HXO bigWig signal p-value ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF148ROD 1017671713 ENCODE Processing Pipeline 8d4b774d5bab52e30c9cde7935b5c787 https://www.encodeproject.org/files/ENCFF095HXO/@@download/ENCFF095HXO.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF333AAE bigWig signal p-value ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF049MPQ, ENCFF148ROD, ENCFF194ECV, ENCFF583FAG 1693403495 ENCODE Processing Pipeline 5bf74c5c9dbf2a9849083fea40c5eafc https://www.encodeproject.org/files/ENCFF333AAE/@@download/ENCFF333AAE.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF317DRS bigWig fold change over control ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF194ECV, ENCFF583FAG 857573631 ENCODE Processing Pipeline dfb501bb673ab0f64d9059bba19a7baf https://www.encodeproject.org/files/ENCFF317DRS/@@download/ENCFF317DRS.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF132XTJ bigWig fold change over control ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF148ROD 1078609589 ENCODE Processing Pipeline a9ece48a9df1cadd9c6aa431572e67fc https://www.encodeproject.org/files/ENCFF132XTJ/@@download/ENCFF132XTJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF377PRJ bigWig fold change over control ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF049MPQ, ENCFF148ROD, ENCFF194ECV, ENCFF583FAG 1872975641 ENCODE Processing Pipeline 45e55a0d25ef413fa763c15c6b0d814d https://www.encodeproject.org/files/ENCFF377PRJ/@@download/ENCFF377PRJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF391ODX bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF194ECV, ENCFF583FAG 6237782 ENCODE Processing Pipeline 0634a0c370f52b3fb44a0b1cc19ef991 https://www.encodeproject.org/files/ENCFF391ODX/@@download/ENCFF391ODX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF998CHH bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF148ROD 6372010 ENCODE Processing Pipeline 03e5cdb6a3717f88a30ab314abbbca12 https://www.encodeproject.org/files/ENCFF998CHH/@@download/ENCFF998CHH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF530SMB bigBed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF391ODX 13527161 ENCODE Processing Pipeline a20140303c13682390e39fe9ff2bade8 https://www.encodeproject.org/files/ENCFF530SMB/@@download/ENCFF530SMB.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF015TCM bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF049MPQ, ENCFF148ROD, ENCFF194ECV, ENCFF583FAG 7133246 ENCODE Processing Pipeline 55a9b6373887a70f51e0182b65055596 https://www.encodeproject.org/files/ENCFF015TCM/@@download/ENCFF015TCM.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF801MBG bigBed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF998CHH 11318983 ENCODE Processing Pipeline d2f0dd057c2e6677ba242c45ca786132 https://www.encodeproject.org/files/ENCFF801MBG/@@download/ENCFF801MBG.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF993XOP bigBed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF015TCM 13548322 ENCODE Processing Pipeline 7406c1a23014da9a3193bc9c5ca194e5 https://www.encodeproject.org/files/ENCFF993XOP/@@download/ENCFF993XOP.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF898MXH bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF233XOC, ENCFF439BDU, ENCFF643CGH 3865299224 ENCODE Processing Pipeline a9857bef7909e807f3f897f018ef7934 https://www.encodeproject.org/files/ENCFF898MXH/@@download/ENCFF898MXH.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF885XJT bam unfiltered alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF233XOC, ENCFF439BDU, ENCFF643CGH 4577589399 ENCODE Processing Pipeline f24f40f91083268eb6b8678605ae41d4 https://www.encodeproject.org/files/ENCFF885XJT/@@download/ENCFF885XJT.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF751CGH bam unfiltered alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF120ALM, ENCFF140LSM, ENCFF643CGH 3638409937 ENCODE Processing Pipeline b475d839d91cf7e58682cb2bb476a52d https://www.encodeproject.org/files/ENCFF751CGH/@@download/ENCFF751CGH.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF720FQJ bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF120ALM, ENCFF140LSM, ENCFF643CGH 2919683665 ENCODE Processing Pipeline 04529a55799192ea82e569eb767079c8 https://www.encodeproject.org/files/ENCFF720FQJ/@@download/ENCFF720FQJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF106BEC bigWig signal p-value ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF426RDP, ENCFF720FQJ 899877621 ENCODE Processing Pipeline e0966e344ed9e8caffb27a5b78f129fb https://www.encodeproject.org/files/ENCFF106BEC/@@download/ENCFF106BEC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF008SYO bigWig signal p-value ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF291AFY, ENCFF898MXH 1042271322 ENCODE Processing Pipeline 88537dc6ac74253020658461b616fc63 https://www.encodeproject.org/files/ENCFF008SYO/@@download/ENCFF008SYO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF774AXC bigWig signal p-value ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF720FQJ, ENCFF898MXH 1488654567 ENCODE Processing Pipeline 12b4a487c5e20e0cd9a54350fd0ea26b https://www.encodeproject.org/files/ENCFF774AXC/@@download/ENCFF774AXC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF873MMO bigWig fold change over control ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF426RDP, ENCFF720FQJ 870629208 ENCODE Processing Pipeline 6af4c49cede794471f6c6faf67ee0d01 https://www.encodeproject.org/files/ENCFF873MMO/@@download/ENCFF873MMO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF795PYC bigWig fold change over control ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF291AFY, ENCFF898MXH 1080077528 ENCODE Processing Pipeline 41e73d6ab560324b2b9d2f18eb8c8e44 https://www.encodeproject.org/files/ENCFF795PYC/@@download/ENCFF795PYC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF377ATZ bigBed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF226BRD 11321596 ENCODE Processing Pipeline fcc871995ed7969a9867540d70d858f0 https://www.encodeproject.org/files/ENCFF377ATZ/@@download/ENCFF377ATZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF405ELW bigWig fold change over control ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF720FQJ, ENCFF898MXH 1848969628 ENCODE Processing Pipeline e51dc8c715763e4adac49195bc94d9df https://www.encodeproject.org/files/ENCFF405ELW/@@download/ENCFF405ELW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF656IAV bigBed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF988VFA 13579658 ENCODE Processing Pipeline d629b87fe0886283fa20d3429026b432 https://www.encodeproject.org/files/ENCFF656IAV/@@download/ENCFF656IAV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF988VFA bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF720FQJ, ENCFF898MXH 7079908 ENCODE Processing Pipeline 412dbc54096550bfeafdbf01a17e60c0 https://www.encodeproject.org/files/ENCFF988VFA/@@download/ENCFF988VFA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF137TPO bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF426RDP, ENCFF720FQJ 6046617 ENCODE Processing Pipeline f225abd952f921c61476e06e32b30041 https://www.encodeproject.org/files/ENCFF137TPO/@@download/ENCFF137TPO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF226BRD bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF291AFY, ENCFF898MXH 6181081 ENCODE Processing Pipeline fe17143446a38f17dcf6f53cbace1186 https://www.encodeproject.org/files/ENCFF226BRD/@@download/ENCFF226BRD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF153EMF bigBed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF137TPO 11285911 ENCODE Processing Pipeline 6cd8d73f05daceed0a0fb5deb07be77f https://www.encodeproject.org/files/ENCFF153EMF/@@download/ENCFF153EMF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF310ANF bigBed narrowPeak conservative idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF201SRD 649273 ENCODE Processing Pipeline 16c2e62991f96755259ac21e89826ea1 https://www.encodeproject.org/files/ENCFF310ANF/@@download/ENCFF310ANF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF201SRD bed narrowPeak conservative idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF137TPO, ENCFF226BRD, ENCFF419RSJ, ENCFF988VFA 320658 ENCODE Processing Pipeline ea40b274684d613897e5b52d24b3a578 https://www.encodeproject.org/files/ENCFF201SRD/@@download/ENCFF201SRD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF760ZVI bed narrowPeak optimal idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF137TPO, ENCFF226BRD, ENCFF419RSJ, ENCFF988VFA 506291 ENCODE Processing Pipeline 7e4869b6567a5ec6fe283d63fe6b9964 https://www.encodeproject.org/files/ENCFF760ZVI/@@download/ENCFF760ZVI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF349VGO bigBed narrowPeak optimal idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF760ZVI 906288 ENCODE Processing Pipeline a0bb315dee7bdccc5e7d3ad1fc81e652 https://www.encodeproject.org/files/ENCFF349VGO/@@download/ENCFF349VGO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF536ACI bam unfiltered alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF120ALM, ENCFF140LSM, ENCFF807MUK 3632997564 ENCODE Processing Pipeline 47ed752ab8a4e160112fbb339f78b494 https://www.encodeproject.org/files/ENCFF536ACI/@@download/ENCFF536ACI.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF582JRV bam unfiltered alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF233XOC, ENCFF439BDU, ENCFF807MUK 4568791623 ENCODE Processing Pipeline b1c3b7fc3c2aea5a637a1cc9cb893ad5 https://www.encodeproject.org/files/ENCFF582JRV/@@download/ENCFF582JRV.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF343ULZ bed narrowPeak optimal idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF015TCM, ENCFF391ODX, ENCFF998CHH 434730 ENCODE Processing Pipeline 4ad000f92723a9df7fab2b70ff4cf1c9 https://www.encodeproject.org/files/ENCFF343ULZ/@@download/ENCFF343ULZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF475OMH bigBed narrowPeak conservative idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF043UNR 459272 ENCODE Processing Pipeline db349c05d1f83efce9bead8756eea571 https://www.encodeproject.org/files/ENCFF475OMH/@@download/ENCFF475OMH.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF043UNR bed narrowPeak conservative idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF015TCM, ENCFF391ODX, ENCFF998CHH 281930 ENCODE Processing Pipeline 1a1e8268fed135f6bedb81ec3879f04a https://www.encodeproject.org/files/ENCFF043UNR/@@download/ENCFF043UNR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF554DPM bigBed narrowPeak optimal idr thresholded peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF343ULZ 789377 ENCODE Processing Pipeline 8afe4b7ec079b1162062fbefe40c84e7 https://www.encodeproject.org/files/ENCFF554DPM/@@download/ENCFF554DPM.bigBed hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF318CLL bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF807MUK 1266504607 ENCODE Processing Pipeline 7ea7b7ca62c5c629d652effc2319791f https://www.encodeproject.org/files/ENCFF318CLL/@@download/ENCFF318CLL.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF638IWQ bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF807MUK 1363482903 ENCODE Processing Pipeline 9a9217e3df2f74f69d463689e8f470f7 https://www.encodeproject.org/files/ENCFF638IWQ/@@download/ENCFF638IWQ.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002ECD fastq reads ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 1 36 single-ended 1031549890 Michael Snyder, Stanford 81e9ffc677c272c9b663252b378bb01f https://www.encodeproject.org/files/ENCFF002ECD/@@download/ENCFF002ECD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECP/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF002ECH fastq reads ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 1 36 single-ended 1138814369 Michael Snyder, Stanford 461ff206f6d7814834d7c3fd691625bb https://www.encodeproject.org/files/ENCFF002ECH/@@download/ENCFF002ECH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECR/ released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF080JID bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF807MUK 873799080 ENCODE Processing Pipeline b67e0a8d2465045cde5bbf7ebefa983c https://www.encodeproject.org/files/ENCFF080JID/@@download/ENCFF080JID.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF517IMC bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF807MUK 906767182 ENCODE Processing Pipeline 2c25c5de03fcb6a411aefbf346749b90 https://www.encodeproject.org/files/ENCFF517IMC/@@download/ENCFF517IMC.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF704DLD bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF643CGH 1270264033 ENCODE Processing Pipeline 3011ef9a2147749bce523629e6083a52 https://www.encodeproject.org/files/ENCFF704DLD/@@download/ENCFF704DLD.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF126UEC bam unfiltered alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF643CGH 1369127053 ENCODE Processing Pipeline 2241c1845959b0250f94803cb752e48f https://www.encodeproject.org/files/ENCFF126UEC/@@download/ENCFF126UEC.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF302YQK bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF643CGH 907057696 ENCODE Processing Pipeline 002cb9a381fc0d1a87ddf3a18c0d34ce https://www.encodeproject.org/files/ENCFF302YQK/@@download/ENCFF302YQK.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF185OAP bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF643CGH 879964734 ENCODE Processing Pipeline 3a5b5a876fb046bf9a2f24ccdd5e19c7 https://www.encodeproject.org/files/ENCFF185OAP/@@download/ENCFF185OAP.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF473RRH bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF185OAP, ENCFF272DEZ 547411478 ENCODE Processing Pipeline 845f0e0a15908eb2a19d9400db1b6f26 https://www.encodeproject.org/files/ENCFF473RRH/@@download/ENCFF473RRH.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF509SLD bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF302YQK, ENCFF872ERZ 455153611 ENCODE Processing Pipeline df3051e61bffb0d1fb47de5a99249128 https://www.encodeproject.org/files/ENCFF509SLD/@@download/ENCFF509SLD.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF849ZXL bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF185OAP, ENCFF272DEZ, ENCFF302YQK, ENCFF872ERZ 1185454041 ENCODE Processing Pipeline ce7878f16fa06bc4958c90533effab69 https://www.encodeproject.org/files/ENCFF849ZXL/@@download/ENCFF849ZXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF649EHY bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF185OAP, ENCFF272DEZ 487390772 ENCODE Processing Pipeline 30594a70a93c27746c717a84a1ac8e2b https://www.encodeproject.org/files/ENCFF649EHY/@@download/ENCFF649EHY.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF735YSE bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF185OAP, ENCFF272DEZ, ENCFF302YQK, ENCFF872ERZ 1044162872 ENCODE Processing Pipeline 32376074ddf24901c3cd0a4676832284 https://www.encodeproject.org/files/ENCFF735YSE/@@download/ENCFF735YSE.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF529ZOV bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF302YQK, ENCFF872ERZ 483644394 ENCODE Processing Pipeline 6f78e0120dd4c5b9ef13ad59b81294a7 https://www.encodeproject.org/files/ENCFF529ZOV/@@download/ENCFF529ZOV.bigWig GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF846DZW bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF346DIU 11124211 ENCODE Processing Pipeline 8a8a9074513388cc629056de9985fa0e https://www.encodeproject.org/files/ENCFF846DZW/@@download/ENCFF846DZW.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF299BSA bed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF110RYE, ENCFF346DIU, ENCFF419RSJ, ENCFF996UMX 134310 ENCODE Processing Pipeline 2bdbcb401039f0dc85eaf894a02b01c0 https://www.encodeproject.org/files/ENCFF299BSA/@@download/ENCFF299BSA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF110RYE bed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF185OAP, ENCFF272DEZ 4774664 ENCODE Processing Pipeline 570268cfa0b2eefeaec4c54027100c4c https://www.encodeproject.org/files/ENCFF110RYE/@@download/ENCFF110RYE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF346DIU bed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF302YQK, ENCFF872ERZ 4561042 ENCODE Processing Pipeline 1cc47a98240db68b3f6074bb3824f201 https://www.encodeproject.org/files/ENCFF346DIU/@@download/ENCFF346DIU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF236HWP bigBed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF224WII 391387 ENCODE Processing Pipeline ed1d97ed9bc81090c56b91465542cce3 https://www.encodeproject.org/files/ENCFF236HWP/@@download/ENCFF236HWP.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF996UMX bed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF185OAP, ENCFF272DEZ, ENCFF302YQK, ENCFF872ERZ 5470775 ENCODE Processing Pipeline 0dfc2626613f601d3bcfd977ab3ea127 https://www.encodeproject.org/files/ENCFF996UMX/@@download/ENCFF996UMX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF565GUC bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF996UMX 10507303 ENCODE Processing Pipeline 27c7ea760ebc05ac064acfc1c2ab9bea https://www.encodeproject.org/files/ENCFF565GUC/@@download/ENCFF565GUC.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF014YXA bigBed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF299BSA 315558 ENCODE Processing Pipeline 965719d2f0ec9c8b9680d4af01324695 https://www.encodeproject.org/files/ENCFF014YXA/@@download/ENCFF014YXA.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF125PYL bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF110RYE 11129108 ENCODE Processing Pipeline 30cd16c32a067b479f067c86a6006294 https://www.encodeproject.org/files/ENCFF125PYL/@@download/ENCFF125PYL.bigBed GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF224WII bed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF110RYE, ENCFF346DIU, ENCFF419RSJ, ENCFF996UMX 182392 ENCODE Processing Pipeline ad216a5240e0fec8f1ba5a20940bfdb9 https://www.encodeproject.org/files/ENCFF224WII/@@download/ENCFF224WII.bed.gz GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF258QFZ bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF080JID, ENCFF849LYY 627577010 ENCODE Processing Pipeline a57751c28ec5db0508fb6003a245faa7 https://www.encodeproject.org/files/ENCFF258QFZ/@@download/ENCFF258QFZ.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF268DKR bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF080JID, ENCFF849LYY 502005169 ENCODE Processing Pipeline 3e6c4716d2485b9c22b3371137313858 https://www.encodeproject.org/files/ENCFF268DKR/@@download/ENCFF268DKR.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF003JQS bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF426WJH, ENCFF517IMC 487120448 ENCODE Processing Pipeline fd221e6dc7deb84c95242b5992afe84d https://www.encodeproject.org/files/ENCFF003JQS/@@download/ENCFF003JQS.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF256WMI bigWig signal p-value ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF080JID, ENCFF426WJH, ENCFF517IMC, ENCFF849LYY 921060231 ENCODE Processing Pipeline f0269d160e14faf00a06fe334e667deb https://www.encodeproject.org/files/ENCFF256WMI/@@download/ENCFF256WMI.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF244PCF bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF426WJH, ENCFF517IMC 474955095 ENCODE Processing Pipeline 6bbbe0e4601725f054e4cfb9a957d6cb https://www.encodeproject.org/files/ENCFF244PCF/@@download/ENCFF244PCF.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF508ATZ bigWig fold change over control ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF080JID, ENCFF426WJH, ENCFF517IMC, ENCFF849LYY 1051698740 ENCODE Processing Pipeline f616b382cf0e36889065f3bce2deac72 https://www.encodeproject.org/files/ENCFF508ATZ/@@download/ENCFF508ATZ.bigWig hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF380MCV bed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF080JID, ENCFF426WJH, ENCFF517IMC, ENCFF849LYY 5961157 ENCODE Processing Pipeline 07643d650a18ece194e9545c529e2ec0 https://www.encodeproject.org/files/ENCFF380MCV/@@download/ENCFF380MCV.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF772RKI bed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF080JID, ENCFF849LYY 4773186 ENCODE Processing Pipeline 5057aa551409cf23ab7dea7c285bd7ea https://www.encodeproject.org/files/ENCFF772RKI/@@download/ENCFF772RKI.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF527IRJ bed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF426WJH, ENCFF517IMC 4528877 ENCODE Processing Pipeline 5c5012d2fcd38532b8da66e0c4f14311 https://www.encodeproject.org/files/ENCFF527IRJ/@@download/ENCFF527IRJ.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF677FRQ bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 ENCFF772RKI 11119730 ENCODE Processing Pipeline 6f4af6514f01efc05ab25c66ae7e09bd https://www.encodeproject.org/files/ENCFF677FRQ/@@download/ENCFF677FRQ.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF124KME bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 ENCFF527IRJ 11088249 ENCODE Processing Pipeline e027e28555ce9873a8eb7e0469aaef54 https://www.encodeproject.org/files/ENCFF124KME/@@download/ENCFF124KME.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF005LCQ bed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF001TDO, ENCFF380MCV, ENCFF527IRJ, ENCFF772RKI 129893 ENCODE Processing Pipeline b5b28ba9aadd76870d1cbea25c6579a0 https://www.encodeproject.org/files/ENCFF005LCQ/@@download/ENCFF005LCQ.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF941JSP bigBed narrowPeak peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF380MCV 11496747 ENCODE Processing Pipeline 889ada35d6a05a041e78f47755498d7b https://www.encodeproject.org/files/ENCFF941JSP/@@download/ENCFF941JSP.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF998TXK bigBed narrowPeak conservative idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF005LCQ 254747 ENCODE Processing Pipeline e3022c4c14ea644f917ebeaed85f8b99 https://www.encodeproject.org/files/ENCFF998TXK/@@download/ENCFF998TXK.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF113FOY bigBed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF144FCI 381288 ENCODE Processing Pipeline 06a736e2dbd95b408bff1d825df361ac https://www.encodeproject.org/files/ENCFF113FOY/@@download/ENCFF113FOY.bigBed hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF144FCI bed narrowPeak optimal idr thresholded peaks ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4, 5 ENCFF001TDO, ENCFF380MCV, ENCFF527IRJ, ENCFF772RKI 175071 ENCODE Processing Pipeline 725a70663ca7828abe2e411b97c0330b https://www.encodeproject.org/files/ENCFF144FCI/@@download/ENCFF144FCI.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF499UAP fastq reads ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 1 76 paired-ended 1 ENCFF268HPC 1992821444 Bradley Bernstein, Broad 5d85dc626431e3ada8c7be1b4e29eff0 SRA:SRR5833073 https://www.encodeproject.org/files/ENCFF499UAP/@@download/ENCFF499UAP.fastq.gz Illumina HiSeq 2500 /files/ENCFF116RUN/, /files/ENCFF470CVX/, /files/ENCFF546EIX/, /files/ENCFF641CIT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF268HPC fastq reads ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 1 76 paired-ended 2 ENCFF499UAP 1974499426 Bradley Bernstein, Broad 15b1fbad839d3987d020237b67a083f9 SRA:SRR5833073 https://www.encodeproject.org/files/ENCFF268HPC/@@download/ENCFF268HPC.fastq.gz Illumina HiSeq 2500 /files/ENCFF116RUN/, /files/ENCFF470CVX/, /files/ENCFF546EIX/, /files/ENCFF641CIT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF727LRA fastq reads ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 1 76 paired-ended 1 ENCFF409OHJ 2389849457 Bradley Bernstein, Broad 66bdc273929d6f34cc9927301abee85d SRA:SRR5833072 https://www.encodeproject.org/files/ENCFF727LRA/@@download/ENCFF727LRA.fastq.gz Illumina HiSeq 2500 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF300LJR/, /files/ENCFF869EIB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF409OHJ fastq reads ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 1 76 paired-ended 2 ENCFF727LRA 2469419704 Bradley Bernstein, Broad cda600a75d7e0ff5ea0f08d083160a04 SRA:SRR5833072 https://www.encodeproject.org/files/ENCFF409OHJ/@@download/ENCFF409OHJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF126GOB/, /files/ENCFF146JNK/, /files/ENCFF300LJR/, /files/ENCFF869EIB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF916ERF bam unfiltered alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 76 ENCFF268HPC, ENCFF499UAP, ENCFF643CGH 4846127581 ENCODE Processing Pipeline e4d49dd034449b6c51d5d9e0d05cca86 https://www.encodeproject.org/files/ENCFF916ERF/@@download/ENCFF916ERF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF231COD bam unfiltered alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 76 ENCFF409OHJ, ENCFF643CGH, ENCFF727LRA 5882699340 ENCODE Processing Pipeline 05b8219d44e344a36a8cf59c21ee36ea https://www.encodeproject.org/files/ENCFF231COD/@@download/ENCFF231COD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF773HIM bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 76 ENCFF409OHJ, ENCFF727LRA, ENCFF807MUK 3829003132 ENCODE Processing Pipeline b7d19b2d2790c1f5a3025f9b682dbe4f https://www.encodeproject.org/files/ENCFF773HIM/@@download/ENCFF773HIM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF257GMX bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 76 ENCFF268HPC, ENCFF499UAP, ENCFF807MUK 4030094729 ENCODE Processing Pipeline f755715de2554f37d40d4a04169e2afa https://www.encodeproject.org/files/ENCFF257GMX/@@download/ENCFF257GMX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF106DVP bam unfiltered alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 76 ENCFF268HPC, ENCFF499UAP, ENCFF807MUK 4833372338 ENCODE Processing Pipeline e33f572fe3efa3438d6e083468bc9a88 https://www.encodeproject.org/files/ENCFF106DVP/@@download/ENCFF106DVP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF883CYY bam unfiltered alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 76 ENCFF409OHJ, ENCFF727LRA, ENCFF807MUK 5870850388 ENCODE Processing Pipeline a4c497cf22a71d2c3ce192364268bc98 https://www.encodeproject.org/files/ENCFF883CYY/@@download/ENCFF883CYY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF202XBB bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 76 ENCFF409OHJ, ENCFF643CGH, ENCFF727LRA 3828613904 ENCODE Processing Pipeline 0598f3ce9be047dcb54fdbce40347144 https://www.encodeproject.org/files/ENCFF202XBB/@@download/ENCFF202XBB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF589DKU bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 76 ENCFF268HPC, ENCFF499UAP, ENCFF643CGH 4029008710 ENCODE Processing Pipeline f930575e5d0d8067eda8d564116b37e9 https://www.encodeproject.org/files/ENCFF589DKU/@@download/ENCFF589DKU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF830YOA bigWig signal p-value ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF202XBB, ENCFF687LIL, ENCFF956GLJ 2249078365 ENCODE Processing Pipeline 6f0b4b7d7dada08443c52aefc72fb9d9 https://www.encodeproject.org/files/ENCFF830YOA/@@download/ENCFF830YOA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF668SAZ bigWig signal p-value ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 2263564380 ENCODE Processing Pipeline ed6b318771ac163798f6185ede8d716b https://www.encodeproject.org/files/ENCFF668SAZ/@@download/ENCFF668SAZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF903YUB bigWig signal p-value ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF773HIM 2329703559 ENCODE Processing Pipeline 389df2bc5a9c904972740f5ab33e704e https://www.encodeproject.org/files/ENCFF903YUB/@@download/ENCFF903YUB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF229SWN bigWig signal p-value ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW, ENCFF773HIM 2333784901 ENCODE Processing Pipeline d11e87f14e351f7ce2fe17706d3dffb3 https://www.encodeproject.org/files/ENCFF229SWN/@@download/ENCFF229SWN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF596ZSJ bigWig fold change over control ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF202XBB, ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 2735185762 ENCODE Processing Pipeline 1363d8dec75368ad59b97d30ba7a5efc https://www.encodeproject.org/files/ENCFF596ZSJ/@@download/ENCFF596ZSJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF054BGU bigWig signal p-value ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW 2432629347 ENCODE Processing Pipeline 4893223d18d430cf9d57423b80f50660 https://www.encodeproject.org/files/ENCFF054BGU/@@download/ENCFF054BGU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF951CCA bigWig signal p-value ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF202XBB, ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 2766170355 ENCODE Processing Pipeline 44a0718c5bbbaa9f6710cec0e4d4f901 https://www.encodeproject.org/files/ENCFF951CCA/@@download/ENCFF951CCA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF203ZIS bed narrowPeak optimal idr thresholded peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF027MQJ, ENCFF419RSJ, ENCFF629JJL, ENCFF777TNZ 1388363 ENCODE Processing Pipeline 7c94b3d7b8c149735a4d406697dad69e https://www.encodeproject.org/files/ENCFF203ZIS/@@download/ENCFF203ZIS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF081RSE bigBed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF027MQJ 14147468 ENCODE Processing Pipeline 1a214233350c12a111160fe95124bb01 https://www.encodeproject.org/files/ENCFF081RSE/@@download/ENCFF081RSE.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF534ULU bigBed narrowPeak optimal idr thresholded peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF203ZIS 2460492 ENCODE Processing Pipeline 0e165a27846491a958c946da62bd349c https://www.encodeproject.org/files/ENCFF534ULU/@@download/ENCFF534ULU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF085WCZ bigWig fold change over control ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF773HIM 2005160605 ENCODE Processing Pipeline 3c7be5fab0231d9b5b358d0b99de9419 https://www.encodeproject.org/files/ENCFF085WCZ/@@download/ENCFF085WCZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF723ZNV bigWig fold change over control ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF202XBB, ENCFF687LIL, ENCFF956GLJ 2004944624 ENCODE Processing Pipeline ffca6a5f717cdee55880b906b8cc16d2 https://www.encodeproject.org/files/ENCFF723ZNV/@@download/ENCFF723ZNV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF294YRB bigWig fold change over control ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 2150710727 ENCODE Processing Pipeline afeddbe7222475dbc6f9f11a91f212df https://www.encodeproject.org/files/ENCFF294YRB/@@download/ENCFF294YRB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF277XJY bigWig fold change over control ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW 2170266232 ENCODE Processing Pipeline 25ec7fe32ecc92f30d1d228d9b3052be https://www.encodeproject.org/files/ENCFF277XJY/@@download/ENCFF277XJY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF027MQJ bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF202XBB, ENCFF687LIL, ENCFF956GLJ 6899205 ENCODE Processing Pipeline 5be82791d3e6d640e6d0930adfaf6a94 https://www.encodeproject.org/files/ENCFF027MQJ/@@download/ENCFF027MQJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF629JJL bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 6916082 ENCODE Processing Pipeline ce6b15ac5420c44a86cdfa8a20e09578 https://www.encodeproject.org/files/ENCFF629JJL/@@download/ENCFF629JJL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF777TNZ bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF202XBB, ENCFF589DKU, ENCFF687LIL, ENCFF956GLJ 6935302 ENCODE Processing Pipeline 90f8dd5101c2025e7fdfa7e1ee26dd5d https://www.encodeproject.org/files/ENCFF777TNZ/@@download/ENCFF777TNZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF890GPO bigBed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF629JJL 13841872 ENCODE Processing Pipeline bc5b54aa4f28269440cfff470a906dc7 https://www.encodeproject.org/files/ENCFF890GPO/@@download/ENCFF890GPO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF922KBG bigBed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF777TNZ 13733140 ENCODE Processing Pipeline eb9cf6aa412b02c223213c388768ca8d https://www.encodeproject.org/files/ENCFF922KBG/@@download/ENCFF922KBG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF516POC bigWig fold change over control ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW, ENCFF773HIM 2739567651 ENCODE Processing Pipeline 4c544aa290c5e225700e0a73c4df65bd https://www.encodeproject.org/files/ENCFF516POC/@@download/ENCFF516POC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF752PSY bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF773HIM 6715847 ENCODE Processing Pipeline 9b478693faabb4574d0ff5fd47c56a59 https://www.encodeproject.org/files/ENCFF752PSY/@@download/ENCFF752PSY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF282QPK bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW 6982761 ENCODE Processing Pipeline 5126fbc6f3bf70276250ace9b4e7a6cf https://www.encodeproject.org/files/ENCFF282QPK/@@download/ENCFF282QPK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF021ENS bigBed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF282QPK 13906621 ENCODE Processing Pipeline ddd836e845e37b525b87640e984cf8bc https://www.encodeproject.org/files/ENCFF021ENS/@@download/ENCFF021ENS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF566IFZ bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW, ENCFF773HIM 6850645 ENCODE Processing Pipeline 35ff47df9817a4e54c0c10952aa44660 https://www.encodeproject.org/files/ENCFF566IFZ/@@download/ENCFF566IFZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF017JKO bigBed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF752PSY 13914576 ENCODE Processing Pipeline c6834e3e3607aecc586fcdb16ca3d79f https://www.encodeproject.org/files/ENCFF017JKO/@@download/ENCFF017JKO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF355OQM bed narrowPeak optimal idr thresholded peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF001TDO, ENCFF282QPK, ENCFF566IFZ, ENCFF752PSY 1382660 ENCODE Processing Pipeline aa33c900320825756bfd377ef566f12e https://www.encodeproject.org/files/ENCFF355OQM/@@download/ENCFF355OQM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF193XLJ bigBed narrowPeak optimal idr thresholded peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF355OQM 2444853 ENCODE Processing Pipeline fabdb78e08746521fd4d37d98e0ce3aa https://www.encodeproject.org/files/ENCFF193XLJ/@@download/ENCFF193XLJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF776NHY bigBed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1, 2 ENCFF566IFZ 13609874 ENCODE Processing Pipeline 4db9e732fd11a2718803489026f0f9c8 https://www.encodeproject.org/files/ENCFF776NHY/@@download/ENCFF776NHY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF640TPX fastq reads ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 705534920 Xiang-Dong Fu, UCSD 36248c7dda7c395619c2f15a77b1c750 https://www.encodeproject.org/files/ENCFF640TPX/@@download/ENCFF640TPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF289XBX/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF872IMK fastq reads ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 726099622 Xiang-Dong Fu, UCSD 0aac86a81947dcb1ed53eeb6d8ffdb2e https://www.encodeproject.org/files/ENCFF872IMK/@@download/ENCFF872IMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF593HBL/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF221QCF bam unfiltered alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF643CGH, ENCFF872IMK 952680300 ENCODE Processing Pipeline a71fe8f3a64e50474b5333b79a5c530c https://www.encodeproject.org/files/ENCFF221QCF/@@download/ENCFF221QCF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF569ZLS bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF643CGH, ENCFF872IMK 518712725 ENCODE Processing Pipeline c66a28f51e1a6292530578b6c2117a42 https://www.encodeproject.org/files/ENCFF569ZLS/@@download/ENCFF569ZLS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF080YDK fastq reads ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 1133557749 Xiang-Dong Fu, UCSD 288331618e4bdcd941dd7e70597b2017 https://www.encodeproject.org/files/ENCFF080YDK/@@download/ENCFF080YDK.fastq.gz Illumina HiSeq 2500 /files/ENCFF289XBX/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF013TMF bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF872IMK 519299257 ENCODE Processing Pipeline fbbeece12e4de0d43bf4940523c8e4ad https://www.encodeproject.org/files/ENCFF013TMF/@@download/ENCFF013TMF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF629IKB bam unfiltered alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF872IMK 949979327 ENCODE Processing Pipeline 95fdf6c652b016f7c898291b9b764c74 https://www.encodeproject.org/files/ENCFF629IKB/@@download/ENCFF629IKB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF979WGI bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF080YDK, ENCFF640TPX, ENCFF643CGH 529281312 ENCODE Processing Pipeline adb191b5658a914930a9c1a699798b09 https://www.encodeproject.org/files/ENCFF979WGI/@@download/ENCFF979WGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF208WUP bam unfiltered alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF080YDK, ENCFF640TPX, ENCFF807MUK 1687746375 ENCODE Processing Pipeline d9455f32ebe9f7b981d41c2027479219 https://www.encodeproject.org/files/ENCFF208WUP/@@download/ENCFF208WUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF968IOT bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF080YDK, ENCFF640TPX, ENCFF807MUK 529841452 ENCODE Processing Pipeline 1a29f71c22660c335f34180e4bbdd6da https://www.encodeproject.org/files/ENCFF968IOT/@@download/ENCFF968IOT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF921UWK bam unfiltered alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF080YDK, ENCFF640TPX, ENCFF643CGH 1694695101 ENCODE Processing Pipeline e587e9b62e0a7abcb3b0431e2afc6ebd https://www.encodeproject.org/files/ENCFF921UWK/@@download/ENCFF921UWK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF395GAQ bigWig signal p-value ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF569ZLS, ENCFF951CQL 471331512 ENCODE Processing Pipeline 1a694422cf74fbcde0c9a0cd5cba0a11 https://www.encodeproject.org/files/ENCFF395GAQ/@@download/ENCFF395GAQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF315KSA bigWig fold change over control ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF569ZLS, ENCFF951CQL 315267506 ENCODE Processing Pipeline da5474822ec185d86c9a3289b3470ae1 https://www.encodeproject.org/files/ENCFF315KSA/@@download/ENCFF315KSA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF183ORE bigWig signal p-value ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF550DOI, ENCFF979WGI 419096628 ENCODE Processing Pipeline 43124028619dfd0f1aefa8c7181986bc https://www.encodeproject.org/files/ENCFF183ORE/@@download/ENCFF183ORE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF512YXS bigWig signal p-value ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF550DOI, ENCFF569ZLS, ENCFF951CQL, ENCFF979WGI 775743936 ENCODE Processing Pipeline 3f13cfc3d54c3d0b42a8a721f5d003d9 https://www.encodeproject.org/files/ENCFF512YXS/@@download/ENCFF512YXS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF004IMK bigWig fold change over control ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF550DOI, ENCFF979WGI 308951312 ENCODE Processing Pipeline 100c5b44f6509bd9a7736bc0e4693181 https://www.encodeproject.org/files/ENCFF004IMK/@@download/ENCFF004IMK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF922BCC bigBed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF034KZB 13313689 ENCODE Processing Pipeline 4f35d0c1bb4799a9fce3209c22d808ba https://www.encodeproject.org/files/ENCFF922BCC/@@download/ENCFF922BCC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF151QDV bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF550DOI, ENCFF979WGI 5614054 ENCODE Processing Pipeline 3fa4656ec968c2322021f2f008c12fd0 https://www.encodeproject.org/files/ENCFF151QDV/@@download/ENCFF151QDV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF339OYP bigBed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF407UHM 13540673 ENCODE Processing Pipeline 297fd48e5fd486ca6f6512532cb75984 https://www.encodeproject.org/files/ENCFF339OYP/@@download/ENCFF339OYP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF463MRT bed narrowPeak conservative idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF034KZB, ENCFF151QDV, ENCFF407UHM, ENCFF419RSJ 400505 ENCODE Processing Pipeline 2744e27bcf9e664b3aa062d447aa5c08 https://www.encodeproject.org/files/ENCFF463MRT/@@download/ENCFF463MRT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF126YPQ bigWig fold change over control ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF550DOI, ENCFF569ZLS, ENCFF951CQL, ENCFF979WGI 699025145 ENCODE Processing Pipeline 04fb28ed6407248219287dedf30079bb https://www.encodeproject.org/files/ENCFF126YPQ/@@download/ENCFF126YPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF828KXG bed narrowPeak optimal idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF034KZB, ENCFF151QDV, ENCFF407UHM, ENCFF419RSJ 439017 ENCODE Processing Pipeline 33f672de17aaab68394af4abf4fc220c https://www.encodeproject.org/files/ENCFF828KXG/@@download/ENCFF828KXG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF826MXP bigBed narrowPeak optimal idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF828KXG 937567 ENCODE Processing Pipeline bddbd16b15eb84862a9ed82b501b272d https://www.encodeproject.org/files/ENCFF826MXP/@@download/ENCFF826MXP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF034KZB bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF569ZLS, ENCFF951CQL 5684351 ENCODE Processing Pipeline f57a15a6deb03c0a7c9373421067411f https://www.encodeproject.org/files/ENCFF034KZB/@@download/ENCFF034KZB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF407UHM bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF550DOI, ENCFF569ZLS, ENCFF951CQL, ENCFF979WGI 6867518 ENCODE Processing Pipeline 4a4442aef83bdcdece125380b4c8af51 https://www.encodeproject.org/files/ENCFF407UHM/@@download/ENCFF407UHM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF311IWM bigBed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF151QDV 13311222 ENCODE Processing Pipeline e629fb758dc09cd95f8477af075cb9f7 https://www.encodeproject.org/files/ENCFF311IWM/@@download/ENCFF311IWM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF832WCX bigBed narrowPeak conservative idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF463MRT 707219 ENCODE Processing Pipeline f3c7770469b55a3ba8b2bf822cc44649 https://www.encodeproject.org/files/ENCFF832WCX/@@download/ENCFF832WCX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF292JAR bigWig fold change over control ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF013TMF, ENCFF758YUI 316402451 ENCODE Processing Pipeline 24b4f2bc9ca3cfb9107d136647d9a774 https://www.encodeproject.org/files/ENCFF292JAR/@@download/ENCFF292JAR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF813MAV bigWig signal p-value ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF013TMF, ENCFF758YUI 427335486 ENCODE Processing Pipeline 66a637f9fdb501cd2298f5920f418c79 https://www.encodeproject.org/files/ENCFF813MAV/@@download/ENCFF813MAV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF310ACP bigWig signal p-value ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF287BIH, ENCFF968IOT 411993041 ENCODE Processing Pipeline 87dd267e22c2cc7ce8d5dc9df8b59e51 https://www.encodeproject.org/files/ENCFF310ACP/@@download/ENCFF310ACP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF183DGH bigWig signal p-value ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF013TMF, ENCFF287BIH, ENCFF758YUI, ENCFF968IOT 776161616 ENCODE Processing Pipeline 604ec1f4aa8b9e75626d2f0773b61f79 https://www.encodeproject.org/files/ENCFF183DGH/@@download/ENCFF183DGH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF003ARN bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF287BIH, ENCFF968IOT 5674857 ENCODE Processing Pipeline 12931dfbd606e6f576996fb714500421 https://www.encodeproject.org/files/ENCFF003ARN/@@download/ENCFF003ARN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF497ROV bigBed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF792GAN 13531949 ENCODE Processing Pipeline c2ac12f78859ed911a95b2a69379b56b https://www.encodeproject.org/files/ENCFF497ROV/@@download/ENCFF497ROV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF344SKX bigWig fold change over control ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF013TMF, ENCFF287BIH, ENCFF758YUI, ENCFF968IOT 718551719 ENCODE Processing Pipeline a6624c18658a0ed562561221987107fa https://www.encodeproject.org/files/ENCFF344SKX/@@download/ENCFF344SKX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF792GAN bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF013TMF, ENCFF287BIH, ENCFF758YUI, ENCFF968IOT 6866185 ENCODE Processing Pipeline 3d679ac0e316a25c79b11cc01006a443 https://www.encodeproject.org/files/ENCFF792GAN/@@download/ENCFF792GAN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF251ZGT bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF013TMF, ENCFF758YUI 5651945 ENCODE Processing Pipeline 9a1f9c173d9924e90f03fde80cb90b98 https://www.encodeproject.org/files/ENCFF251ZGT/@@download/ENCFF251ZGT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF695YNI bigWig fold change over control ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF287BIH, ENCFF968IOT 309683648 ENCODE Processing Pipeline b4a97fd5b4d543f62b1e340fb430b792 https://www.encodeproject.org/files/ENCFF695YNI/@@download/ENCFF695YNI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF047RDW bigBed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF251ZGT 13275863 ENCODE Processing Pipeline a735793b8d5d465858e5304f4bd8ce20 https://www.encodeproject.org/files/ENCFF047RDW/@@download/ENCFF047RDW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF071PKX bigBed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF003ARN 13374092 ENCODE Processing Pipeline a1554107343be03188ba0a91fe176321 https://www.encodeproject.org/files/ENCFF071PKX/@@download/ENCFF071PKX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF905BWU bigBed narrowPeak optimal idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF099BZU 925897 ENCODE Processing Pipeline b47ff34f40562d6618950c351ae9d537 https://www.encodeproject.org/files/ENCFF905BWU/@@download/ENCFF905BWU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF899PGY bed narrowPeak conservative idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF003ARN, ENCFF251ZGT, ENCFF792GAN 396024 ENCODE Processing Pipeline 7f931fd3a78675106943e3aad234fc03 https://www.encodeproject.org/files/ENCFF899PGY/@@download/ENCFF899PGY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF920LBM bigBed narrowPeak conservative idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF899PGY 700861 ENCODE Processing Pipeline ec3d10a6f792d2e6f32ccd2b8098c0d5 https://www.encodeproject.org/files/ENCFF920LBM/@@download/ENCFF920LBM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF099BZU bed narrowPeak optimal idr thresholded peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF003ARN, ENCFF251ZGT, ENCFF792GAN 431126 ENCODE Processing Pipeline 20dfbbc9ee14fb41759694702fecf341 https://www.encodeproject.org/files/ENCFF099BZU/@@download/ENCFF099BZU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF001YXI fastq reads ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 1 36 single-ended 875337509 Michael Snyder, Stanford 66dfcdf6a03beb7b317a3912d27dceda https://www.encodeproject.org/files/ENCFF001YXI/@@download/ENCFF001YXI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF001YXJ fastq reads ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 1 36 single-ended 812574240 Michael Snyder, Stanford c9d81cac51568048d8c2ea12e79f156e https://www.encodeproject.org/files/ENCFF001YXJ/@@download/ENCFF001YXJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF343DUY bam unfiltered alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXJ, ENCFF807MUK 1199430585 ENCODE Processing Pipeline ba5ebb815581f558dcc5bea85a87f98b https://www.encodeproject.org/files/ENCFF343DUY/@@download/ENCFF343DUY.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF221PCK bam unfiltered alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXI, ENCFF807MUK 1274039085 ENCODE Processing Pipeline f9981b5d175cf504647edf73499a36e5 https://www.encodeproject.org/files/ENCFF221PCK/@@download/ENCFF221PCK.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF643GJU bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXJ, ENCFF807MUK 826898891 ENCODE Processing Pipeline ad84cdff685e1d5ba02899863cc307bf https://www.encodeproject.org/files/ENCFF643GJU/@@download/ENCFF643GJU.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF241DWU bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXI, ENCFF807MUK 904218958 ENCODE Processing Pipeline 111f1e229e926a53604d5b1c997db660 https://www.encodeproject.org/files/ENCFF241DWU/@@download/ENCFF241DWU.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF596IEM bigWig signal p-value ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF643GJU, ENCFF817NEK 625670278 ENCODE Processing Pipeline 8648745b82d315141866fb483fd4cb02 https://www.encodeproject.org/files/ENCFF596IEM/@@download/ENCFF596IEM.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF503DYE bigWig signal p-value ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF241DWU, ENCFF643GJU, ENCFF817NEK, ENCFF863VMN 1070551440 ENCODE Processing Pipeline 206ddb4d93577e641b1e541876f6b4ac https://www.encodeproject.org/files/ENCFF503DYE/@@download/ENCFF503DYE.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF947QOF bigWig fold change over control ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF643GJU, ENCFF817NEK 435402864 ENCODE Processing Pipeline 72179387a68eaf03e4f3a6b7d54807f2 https://www.encodeproject.org/files/ENCFF947QOF/@@download/ENCFF947QOF.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF290HKN bigWig fold change over control ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF241DWU, ENCFF643GJU, ENCFF817NEK, ENCFF863VMN 1037695306 ENCODE Processing Pipeline a4bb09703b20ba64f726b1d46781fde2 https://www.encodeproject.org/files/ENCFF290HKN/@@download/ENCFF290HKN.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF230PAS bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXJ, ENCFF643CGH 826526148 ENCODE Processing Pipeline 785ec71e5e9357014299d435b46c67e7 https://www.encodeproject.org/files/ENCFF230PAS/@@download/ENCFF230PAS.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF628OYH bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXI, ENCFF643CGH 903762575 ENCODE Processing Pipeline f71e981b8d4e5c595efab56d55b542d4 https://www.encodeproject.org/files/ENCFF628OYH/@@download/ENCFF628OYH.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF327OYV bam unfiltered alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXJ, ENCFF643CGH 1205729351 ENCODE Processing Pipeline f280c30a934847ced01366f949e5e6b0 https://www.encodeproject.org/files/ENCFF327OYV/@@download/ENCFF327OYV.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF205XZW bam unfiltered alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXI, ENCFF643CGH 1280107492 ENCODE Processing Pipeline eb482edc81d37d774bb5b3f9bf8fb7f5 https://www.encodeproject.org/files/ENCFF205XZW/@@download/ENCFF205XZW.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF753DRZ bigWig signal p-value ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF628OYH 528750086 ENCODE Processing Pipeline 5743ce0f5eab5b826811c548b361aa45 https://www.encodeproject.org/files/ENCFF753DRZ/@@download/ENCFF753DRZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF799HRC bigWig signal p-value ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF230PAS, ENCFF536CTV 483038015 ENCODE Processing Pipeline 65397a75c089d56e42653360786be192 https://www.encodeproject.org/files/ENCFF799HRC/@@download/ENCFF799HRC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF407XML bigWig signal p-value ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF230PAS, ENCFF511RLN, ENCFF536CTV, ENCFF628OYH 1086097689 ENCODE Processing Pipeline 74fc0a5a50474f1338b3db5b6de9385d https://www.encodeproject.org/files/ENCFF407XML/@@download/ENCFF407XML.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF971VQZ bigWig fold change over control ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF628OYH 503374659 ENCODE Processing Pipeline 22e4cfa53456d73b8677d036fbb9744b https://www.encodeproject.org/files/ENCFF971VQZ/@@download/ENCFF971VQZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF993ACD bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF511RLN, ENCFF628OYH 5286985 ENCODE Processing Pipeline cc2766c129330132ba32b15729f2e497 https://www.encodeproject.org/files/ENCFF993ACD/@@download/ENCFF993ACD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF932YNC bigWig fold change over control ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF230PAS, ENCFF536CTV 436228745 ENCODE Processing Pipeline a06afd1ec87618ed94ac2b5dd8644ca5 https://www.encodeproject.org/files/ENCFF932YNC/@@download/ENCFF932YNC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF933FCB bigWig fold change over control ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF230PAS, ENCFF511RLN, ENCFF536CTV, ENCFF628OYH 1034165165 ENCODE Processing Pipeline 2fd9e8bffcd27a557f088372757b130f https://www.encodeproject.org/files/ENCFF933FCB/@@download/ENCFF933FCB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF157QAT bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF230PAS, ENCFF511RLN, ENCFF536CTV, ENCFF628OYH 6437121 ENCODE Processing Pipeline 9d981d36528b138b5cfddcd11f683adf https://www.encodeproject.org/files/ENCFF157QAT/@@download/ENCFF157QAT.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF480KLQ bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF230PAS, ENCFF536CTV 5010038 ENCODE Processing Pipeline 497340c3a348f4c563c651161d923576 https://www.encodeproject.org/files/ENCFF480KLQ/@@download/ENCFF480KLQ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF132BGM bigBed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF157QAT 13474197 ENCODE Processing Pipeline 0b285f1e77ba519bf4a4307c99816031 https://www.encodeproject.org/files/ENCFF132BGM/@@download/ENCFF132BGM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF665XJX bigBed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF993ACD 11188240 ENCODE Processing Pipeline e0a013bb7c9abc9b194322291f9fe902 https://www.encodeproject.org/files/ENCFF665XJX/@@download/ENCFF665XJX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF965VPQ bigBed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF480KLQ 11020361 ENCODE Processing Pipeline 9e4c8d615df901d1803842df47b95060 https://www.encodeproject.org/files/ENCFF965VPQ/@@download/ENCFF965VPQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF074ARU bed narrowPeak conservative idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF157QAT, ENCFF419RSJ, ENCFF480KLQ, ENCFF993ACD 138277 ENCODE Processing Pipeline 50211f73d14e220b443468c7bb82c44e https://www.encodeproject.org/files/ENCFF074ARU/@@download/ENCFF074ARU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF126KGW bed narrowPeak optimal idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF157QAT, ENCFF419RSJ, ENCFF480KLQ, ENCFF993ACD 183666 ENCODE Processing Pipeline 1bed94e040d87d99107b00b7a08dd369 https://www.encodeproject.org/files/ENCFF126KGW/@@download/ENCFF126KGW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF386ZKE bigBed narrowPeak conservative idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF074ARU 310638 ENCODE Processing Pipeline be89e16309e6752013eda9595eb1a3c2 https://www.encodeproject.org/files/ENCFF386ZKE/@@download/ENCFF386ZKE.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF650MMD bigBed narrowPeak optimal idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF126KGW 377128 ENCODE Processing Pipeline 3ecdd482be2ffeb6cbbeeb65bf6d29c7 https://www.encodeproject.org/files/ENCFF650MMD/@@download/ENCFF650MMD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF159BRJ bigWig signal p-value ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF241DWU, ENCFF863VMN 637264188 ENCODE Processing Pipeline 0243415a64eab8027f08dea443bbfa1c https://www.encodeproject.org/files/ENCFF159BRJ/@@download/ENCFF159BRJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF941LHP bigWig fold change over control ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF241DWU, ENCFF863VMN 478012069 ENCODE Processing Pipeline f6b88d323f748cefbc67991a6cec1d6a https://www.encodeproject.org/files/ENCFF941LHP/@@download/ENCFF941LHP.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF824GTA bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF241DWU, ENCFF863VMN 5279146 ENCODE Processing Pipeline bb53b1ef60e65b9cb73ae2aeb7befbb2 https://www.encodeproject.org/files/ENCFF824GTA/@@download/ENCFF824GTA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF199AFW bigBed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF342PPK 13456172 ENCODE Processing Pipeline ee796f5afb172a3e9f532e889eb42e36 https://www.encodeproject.org/files/ENCFF199AFW/@@download/ENCFF199AFW.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF924XCI bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF643GJU, ENCFF817NEK 4936186 ENCODE Processing Pipeline bebf42e412474d7e79ab36a89f60f77f https://www.encodeproject.org/files/ENCFF924XCI/@@download/ENCFF924XCI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF342PPK bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF241DWU, ENCFF643GJU, ENCFF817NEK, ENCFF863VMN 6432037 ENCODE Processing Pipeline 90f1589dd05ef199516a5b7d76ba4c78 https://www.encodeproject.org/files/ENCFF342PPK/@@download/ENCFF342PPK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF322DGA bigBed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF824GTA 11177204 ENCODE Processing Pipeline d8318e1628aded214e892eafe048c70a https://www.encodeproject.org/files/ENCFF322DGA/@@download/ENCFF322DGA.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF999LBO bigBed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF924XCI 10969793 ENCODE Processing Pipeline 99fb371f2adf779a1ff8727dcf1129da https://www.encodeproject.org/files/ENCFF999LBO/@@download/ENCFF999LBO.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF144VBS bed narrowPeak conservative idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF342PPK, ENCFF824GTA, ENCFF924XCI 134677 ENCODE Processing Pipeline 611bfde3b51c8091a9efc0e75d06f490 https://www.encodeproject.org/files/ENCFF144VBS/@@download/ENCFF144VBS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF149TKG bigBed narrowPeak conservative idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF144VBS 305144 ENCODE Processing Pipeline a818437672d0a7a237cbcb2e0fce8294 https://www.encodeproject.org/files/ENCFF149TKG/@@download/ENCFF149TKG.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF424KTS bed narrowPeak optimal idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF342PPK, ENCFF824GTA, ENCFF924XCI 184822 ENCODE Processing Pipeline 15651a1c0a92804f9536eab9314b760b https://www.encodeproject.org/files/ENCFF424KTS/@@download/ENCFF424KTS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF035LFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF424KTS 378587 ENCODE Processing Pipeline 71135b394b147c5734be2a7d3f51baca https://www.encodeproject.org/files/ENCFF035LFQ/@@download/ENCFF035LFQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF435DON fastq reads ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF409HCF 2804534951 Michael Snyder, Stanford 2fd9a5cb8e90ed24a2592a050947a364 SRA:SRR6213849 https://www.encodeproject.org/files/ENCFF435DON/@@download/ENCFF435DON.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF794VUU fastq reads ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF495GCB 3284042709 Michael Snyder, Stanford ad425e6405a4eebfa75d6e700217363e SRA:SRR6213850 https://www.encodeproject.org/files/ENCFF794VUU/@@download/ENCFF794VUU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF495GCB fastq reads ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF794VUU 3377096331 Michael Snyder, Stanford 90ae542d1bfa26ee8cafadc45f22849e SRA:SRR6213850 https://www.encodeproject.org/files/ENCFF495GCB/@@download/ENCFF495GCB.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF409HCF fastq reads ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF435DON 2726567910 Michael Snyder, Stanford 48147d81477812aea5de669c9a6850a7 SRA:SRR6213849 https://www.encodeproject.org/files/ENCFF409HCF/@@download/ENCFF409HCF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF521KSL bam unfiltered alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF409HCF, ENCFF435DON, ENCFF643CGH 5552592151 ENCODE Processing Pipeline db60ca11fc9bd5a78d53bf6830b7d1c4 https://www.encodeproject.org/files/ENCFF521KSL/@@download/ENCFF521KSL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF572FNE bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF409HCF, ENCFF435DON, ENCFF643CGH 4423144541 ENCODE Processing Pipeline 6e40ef6aab565fec72179dc79f874649 https://www.encodeproject.org/files/ENCFF572FNE/@@download/ENCFF572FNE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF050MYB bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF409HCF, ENCFF435DON, ENCFF807MUK 4421316995 ENCODE Processing Pipeline b0b28670319486c7396e5a0785af4c7b https://www.encodeproject.org/files/ENCFF050MYB/@@download/ENCFF050MYB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF664DIW bam unfiltered alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF409HCF, ENCFF435DON, ENCFF807MUK 5548521034 ENCODE Processing Pipeline 1e672facfb3f018a819c8aaccae21b3d https://www.encodeproject.org/files/ENCFF664DIW/@@download/ENCFF664DIW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF798UPT bam unfiltered alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF495GCB, ENCFF794VUU, ENCFF807MUK 6594149298 ENCODE Processing Pipeline bb7641746934de3a5ea9eceb6e68cb2d https://www.encodeproject.org/files/ENCFF798UPT/@@download/ENCFF798UPT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF008HXJ bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF495GCB, ENCFF794VUU, ENCFF807MUK 5257371334 ENCODE Processing Pipeline 0265afbb382832c216bb9e4e7790e276 https://www.encodeproject.org/files/ENCFF008HXJ/@@download/ENCFF008HXJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF759FBC bam unfiltered alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF495GCB, ENCFF643CGH, ENCFF794VUU 6598944633 ENCODE Processing Pipeline cc07c505121b2104b113b0f1b1d2736a https://www.encodeproject.org/files/ENCFF759FBC/@@download/ENCFF759FBC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF466HSA bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF495GCB, ENCFF643CGH, ENCFF794VUU 5259388176 ENCODE Processing Pipeline 58b08180325172376d1b25448985bc94 https://www.encodeproject.org/files/ENCFF466HSA/@@download/ENCFF466HSA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF470KJN bigWig signal p-value ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF008HXJ 1439114449 ENCODE Processing Pipeline 5c8873a37150bba139cad8cddd0ca1c0 https://www.encodeproject.org/files/ENCFF470KJN/@@download/ENCFF470KJN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF719XUV bigWig signal p-value ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF050MYB 1241546466 ENCODE Processing Pipeline cd2a4c7925bd31f8b0d8f2cb7d61f165 https://www.encodeproject.org/files/ENCFF719XUV/@@download/ENCFF719XUV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF610OBZ bigWig fold change over control ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF008HXJ 1518008129 ENCODE Processing Pipeline 2ea25e9798036fd82183e9750fcf4d45 https://www.encodeproject.org/files/ENCFF610OBZ/@@download/ENCFF610OBZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF258BWW bigWig signal p-value ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF008HXJ, ENCFF050MYB 1968908740 ENCODE Processing Pipeline 9df0d4b0fcfbaf9213dcb70bdf648a14 https://www.encodeproject.org/files/ENCFF258BWW/@@download/ENCFF258BWW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF208VJT bigWig fold change over control ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF050MYB 1345180596 ENCODE Processing Pipeline f37ad08cacef0b8b8d50df759bdada91 https://www.encodeproject.org/files/ENCFF208VJT/@@download/ENCFF208VJT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF722ATK bigWig fold change over control ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF008HXJ, ENCFF050MYB 1988851172 ENCODE Processing Pipeline 77abfe04b15e1bfb7b4e1fdf2670507c https://www.encodeproject.org/files/ENCFF722ATK/@@download/ENCFF722ATK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF052QDS bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF008HXJ 6834006 ENCODE Processing Pipeline 797c794b7d348476e4375144b7b51f3c https://www.encodeproject.org/files/ENCFF052QDS/@@download/ENCFF052QDS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF509ZUE bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF050MYB 6733082 ENCODE Processing Pipeline c832a0e327363787f3e9263a7771492a https://www.encodeproject.org/files/ENCFF509ZUE/@@download/ENCFF509ZUE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF153ESY bigBed narrowPeak conservative idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF577SUG 159947 ENCODE Processing Pipeline 8f9d05dfb03b60ea3655311721b8b643 https://www.encodeproject.org/files/ENCFF153ESY/@@download/ENCFF153ESY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF598KSH bigBed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF052QDS 11145538 ENCODE Processing Pipeline 7a057a2142fbf6f3a29f5d53f7bdbb34 https://www.encodeproject.org/files/ENCFF598KSH/@@download/ENCFF598KSH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF530NOW bigBed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF509ZUE 13347204 ENCODE Processing Pipeline 1e600a46aa75241bf8232fa3e4f1c685 https://www.encodeproject.org/files/ENCFF530NOW/@@download/ENCFF530NOW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF079BWH bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF008HXJ, ENCFF050MYB 7187871 ENCODE Processing Pipeline a69549106918268a296a592325f69fe8 https://www.encodeproject.org/files/ENCFF079BWH/@@download/ENCFF079BWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF260AIY bigBed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF079BWH 13187727 ENCODE Processing Pipeline c68c086fe761a0533d8d5e7132d794ad https://www.encodeproject.org/files/ENCFF260AIY/@@download/ENCFF260AIY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF577SUG bed narrowPeak conservative idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF052QDS, ENCFF079BWH, ENCFF509ZUE 61747 ENCODE Processing Pipeline be483540e277bceb5b17657b7cee9b2c https://www.encodeproject.org/files/ENCFF577SUG/@@download/ENCFF577SUG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF443RZH bigBed narrowPeak optimal idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF561OIO 181329 ENCODE Processing Pipeline 408462dd65fc2725eccc6c89b7c5d9a6 https://www.encodeproject.org/files/ENCFF443RZH/@@download/ENCFF443RZH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF561OIO bed narrowPeak optimal idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF052QDS, ENCFF079BWH, ENCFF509ZUE 77426 ENCODE Processing Pipeline fe545dc6b547b8633d8506929c4f10f2 https://www.encodeproject.org/files/ENCFF561OIO/@@download/ENCFF561OIO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF063KEL bigWig signal p-value ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF466HSA 1589435716 ENCODE Processing Pipeline db58d064012d45b6ef991e8a408f3774 https://www.encodeproject.org/files/ENCFF063KEL/@@download/ENCFF063KEL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF233MWA bigWig signal p-value ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF572FNE 1341428988 ENCODE Processing Pipeline 8ef1709fb16c85038eaba11e65c9cda9 https://www.encodeproject.org/files/ENCFF233MWA/@@download/ENCFF233MWA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF054KUK bigWig signal p-value ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF466HSA, ENCFF572FNE 2005545913 ENCODE Processing Pipeline 68a6ee92e7d40bcb88f4c399da91db37 https://www.encodeproject.org/files/ENCFF054KUK/@@download/ENCFF054KUK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF661WWH bigWig fold change over control ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF466HSA 1515369491 ENCODE Processing Pipeline 512a07a9865fbc3533edc91765417707 https://www.encodeproject.org/files/ENCFF661WWH/@@download/ENCFF661WWH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF051NWS bigWig fold change over control ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF572FNE 1344862694 ENCODE Processing Pipeline 3515f3eee8a0a4424fc3cb8d7789baca https://www.encodeproject.org/files/ENCFF051NWS/@@download/ENCFF051NWS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF204XKT bigWig fold change over control ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF466HSA, ENCFF572FNE 2027327275 ENCODE Processing Pipeline d3b0f98705b7d085322e19a24a812c57 https://www.encodeproject.org/files/ENCFF204XKT/@@download/ENCFF204XKT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF140ZSC bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF466HSA 6835630 ENCODE Processing Pipeline a1b4bef41333a6fb6c447853d443bee9 https://www.encodeproject.org/files/ENCFF140ZSC/@@download/ENCFF140ZSC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF159MDQ bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF572FNE 6736465 ENCODE Processing Pipeline 79456f3dc559a8aa0a83084500f6edb7 https://www.encodeproject.org/files/ENCFF159MDQ/@@download/ENCFF159MDQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF785CRA bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF466HSA, ENCFF572FNE 7188568 ENCODE Processing Pipeline 220ff58d4bc9bca291f101a6b4eabc9c https://www.encodeproject.org/files/ENCFF785CRA/@@download/ENCFF785CRA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF299TPW bigBed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF159MDQ 13357309 ENCODE Processing Pipeline d3e01239e23a778d6144e16004f4e3f2 https://www.encodeproject.org/files/ENCFF299TPW/@@download/ENCFF299TPW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF035AMN bed narrowPeak conservative idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF140ZSC, ENCFF159MDQ, ENCFF419RSJ, ENCFF785CRA 62706 ENCODE Processing Pipeline 8747f67a736af6c5716b893e3f4a7a7d https://www.encodeproject.org/files/ENCFF035AMN/@@download/ENCFF035AMN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF141UAR bigBed narrowPeak conservative idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF035AMN 161767 ENCODE Processing Pipeline 59892f1864b618df05e2d57d684e32f1 https://www.encodeproject.org/files/ENCFF141UAR/@@download/ENCFF141UAR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF983URN bigBed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF140ZSC 11158438 ENCODE Processing Pipeline 53c11a905c1efbcc7be53435a09517df https://www.encodeproject.org/files/ENCFF983URN/@@download/ENCFF983URN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF243BVC bigBed narrowPeak optimal idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF498XCM 182725 ENCODE Processing Pipeline f40c5c1197e846656e45e487c8c75b6f https://www.encodeproject.org/files/ENCFF243BVC/@@download/ENCFF243BVC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF962FHI bigBed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF785CRA 13199414 ENCODE Processing Pipeline 7b3bb86fd083922147b5d671a8f09b4d https://www.encodeproject.org/files/ENCFF962FHI/@@download/ENCFF962FHI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF498XCM bed narrowPeak optimal idr thresholded peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF140ZSC, ENCFF159MDQ, ENCFF419RSJ, ENCFF785CRA 77929 ENCODE Processing Pipeline 406d9d0dfc605fd38fb1598a418de960 https://www.encodeproject.org/files/ENCFF498XCM/@@download/ENCFF498XCM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF891VEX fastq reads ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 1 40 single-ended 423746811 Xiang-Dong Fu, UCSD a874c228e664bd8383fbf68cb482f579 https://www.encodeproject.org/files/ENCFF891VEX/@@download/ENCFF891VEX.fastq.gz Illumina HiSeq 2000 /files/ENCFF577LLL/ released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF354BZE fastq reads ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 1 40 single-ended 326323834 Xiang-Dong Fu, UCSD 9deadb71cb1fb8c1df8fc1cb5508f83e https://www.encodeproject.org/files/ENCFF354BZE/@@download/ENCFF354BZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF947BQU bam unfiltered alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF643CGH, ENCFF891VEX 621777899 ENCODE Processing Pipeline 25b03a7e3d1906bbf25c1e6f49f90c76 https://www.encodeproject.org/files/ENCFF947BQU/@@download/ENCFF947BQU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF718POT bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF643CGH, ENCFF891VEX 473003679 ENCODE Processing Pipeline 56d12fa7b790908c9f29fa0233fab7f7 https://www.encodeproject.org/files/ENCFF718POT/@@download/ENCFF718POT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF870TNG fastq reads ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 1 40 single-ended 572119148 Xiang-Dong Fu, UCSD 10575c2f31e1625bddc83da65e706a1a https://www.encodeproject.org/files/ENCFF870TNG/@@download/ENCFF870TNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF431ABA bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF807MUK, ENCFF891VEX 473462771 ENCODE Processing Pipeline 70a2031dd1d76a5e789c9ff7786321f0 https://www.encodeproject.org/files/ENCFF431ABA/@@download/ENCFF431ABA.bam hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF235PFI bam unfiltered alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF807MUK, ENCFF891VEX 619549250 ENCODE Processing Pipeline 3f3ec22e27f6d09ee4d22571125640ad https://www.encodeproject.org/files/ENCFF235PFI/@@download/ENCFF235PFI.bam hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF158QPY bam unfiltered alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF354BZE, ENCFF643CGH, ENCFF870TNG 925959275 ENCODE Processing Pipeline ff5e41ecb685c94afac300eb25fd8e8e https://www.encodeproject.org/files/ENCFF158QPY/@@download/ENCFF158QPY.bam GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF296ZWJ bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF354BZE, ENCFF643CGH, ENCFF870TNG 555828893 ENCODE Processing Pipeline dc52fdd5a3e38bbf4482a0d6d39a0d34 https://www.encodeproject.org/files/ENCFF296ZWJ/@@download/ENCFF296ZWJ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF055JSH bam unfiltered alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF354BZE, ENCFF807MUK, ENCFF870TNG 921115020 ENCODE Processing Pipeline 65f7186c33e0d88552fdacdc57772258 https://www.encodeproject.org/files/ENCFF055JSH/@@download/ENCFF055JSH.bam hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF836GWP bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF354BZE, ENCFF807MUK, ENCFF870TNG 556365235 ENCODE Processing Pipeline 85f7199386dca476d701e10372c18941 https://www.encodeproject.org/files/ENCFF836GWP/@@download/ENCFF836GWP.bam hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF693ISH bigWig signal p-value ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF120YSP, ENCFF718POT 611932185 ENCODE Processing Pipeline 11fc51a8542434ea7c17db2ab2bc904d https://www.encodeproject.org/files/ENCFF693ISH/@@download/ENCFF693ISH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF578HVU bigWig signal p-value ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF120YSP, ENCFF296ZWJ, ENCFF718POT, ENCFF906SAI 1175361995 ENCODE Processing Pipeline d7fa6ac259fd2bdecad3370cdc761eac https://www.encodeproject.org/files/ENCFF578HVU/@@download/ENCFF578HVU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF205ESY bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF296ZWJ, ENCFF906SAI 5569732 ENCODE Processing Pipeline ab8e5b653baa80f1800a9be88039130e https://www.encodeproject.org/files/ENCFF205ESY/@@download/ENCFF205ESY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF261XZU bigWig signal p-value ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF431ABA, ENCFF493QSH 569329327 ENCODE Processing Pipeline 8a159524ceeedc50f06971c6a0e26e06 https://www.encodeproject.org/files/ENCFF261XZU/@@download/ENCFF261XZU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF453RAE bigWig fold change over control ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF120YSP, ENCFF718POT 377447304 ENCODE Processing Pipeline 7c62a4fa8a02d96584298da33c59afd5 https://www.encodeproject.org/files/ENCFF453RAE/@@download/ENCFF453RAE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF967TCR bigWig fold change over control ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF431ABA, ENCFF493QSH 378114644 ENCODE Processing Pipeline 50805b54db8a2da86ff2d223d031ca56 https://www.encodeproject.org/files/ENCFF967TCR/@@download/ENCFF967TCR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF935TOG bigWig signal p-value ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF296ZWJ, ENCFF906SAI 583511447 ENCODE Processing Pipeline f73ef020531f9b431d678352c1b039ac https://www.encodeproject.org/files/ENCFF935TOG/@@download/ENCFF935TOG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF483ZUG bigWig signal p-value ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF641CEP, ENCFF836GWP 700932693 ENCODE Processing Pipeline 86fbf225d42b0118dac685858251040c https://www.encodeproject.org/files/ENCFF483ZUG/@@download/ENCFF483ZUG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF901ISZ bigWig signal p-value ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF431ABA, ENCFF493QSH, ENCFF641CEP, ENCFF836GWP 1061978656 ENCODE Processing Pipeline ceafb54789e67a3bda81adcd50f30f5e https://www.encodeproject.org/files/ENCFF901ISZ/@@download/ENCFF901ISZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF381VGS bigWig fold change over control ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF296ZWJ, ENCFF906SAI 462136525 ENCODE Processing Pipeline 946e822b774faa8f8e0cabd40f09846a https://www.encodeproject.org/files/ENCFF381VGS/@@download/ENCFF381VGS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF508ELS bigWig fold change over control ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF641CEP, ENCFF836GWP 449589706 ENCODE Processing Pipeline 312b9ce5732a5a7607702b1b41b63296 https://www.encodeproject.org/files/ENCFF508ELS/@@download/ENCFF508ELS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF429QIM bigWig fold change over control ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF120YSP, ENCFF296ZWJ, ENCFF718POT, ENCFF906SAI 976303070 ENCODE Processing Pipeline e4dde741f751d353d5e7c78bcfd28d25 https://www.encodeproject.org/files/ENCFF429QIM/@@download/ENCFF429QIM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF041ZBZ bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF120YSP, ENCFF718POT 5037390 ENCODE Processing Pipeline f11660a2a0c08d09a3a97d770e13f99a https://www.encodeproject.org/files/ENCFF041ZBZ/@@download/ENCFF041ZBZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF613RZP bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF120YSP, ENCFF296ZWJ, ENCFF718POT, ENCFF906SAI 6648104 ENCODE Processing Pipeline 76380b8c120ca362a3aee9b8cf4c6bdc https://www.encodeproject.org/files/ENCFF613RZP/@@download/ENCFF613RZP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF408SHD bigWig fold change over control ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF431ABA, ENCFF493QSH, ENCFF641CEP, ENCFF836GWP 981987990 ENCODE Processing Pipeline 1ccac345e35473ae48e1e5712d69fde5 https://www.encodeproject.org/files/ENCFF408SHD/@@download/ENCFF408SHD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF127FJQ bigBed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF041ZBZ 11068007 ENCODE Processing Pipeline 10e0b70629ff94906eee1f80d229f810 https://www.encodeproject.org/files/ENCFF127FJQ/@@download/ENCFF127FJQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF959WTR bigBed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF205ESY 13402834 ENCODE Processing Pipeline 0d0cc9b956c29b87d3bb8ee3f8da7d2c https://www.encodeproject.org/files/ENCFF959WTR/@@download/ENCFF959WTR.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF529MBH bigBed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF613RZP 13481772 ENCODE Processing Pipeline 7dd7eb17e40584efcb9f206616f6b0fb https://www.encodeproject.org/files/ENCFF529MBH/@@download/ENCFF529MBH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF797QCH bed narrowPeak conservative idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF041ZBZ, ENCFF205ESY, ENCFF419RSJ, ENCFF613RZP 1279 ENCODE Processing Pipeline 1c9b27598c1a0e5c96d6c6bbf27fd19b https://www.encodeproject.org/files/ENCFF797QCH/@@download/ENCFF797QCH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF985UBC bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF431ABA, ENCFF493QSH 5134983 ENCODE Processing Pipeline f1e0151dfd8b40fec2933c296e70c153 https://www.encodeproject.org/files/ENCFF985UBC/@@download/ENCFF985UBC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF901DAD bigBed narrowPeak conservative idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF797QCH 76462 ENCODE Processing Pipeline d94da8b9eabce21ad694d5d8a9411a4c https://www.encodeproject.org/files/ENCFF901DAD/@@download/ENCFF901DAD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF994WPN bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF641CEP, ENCFF836GWP 5649219 ENCODE Processing Pipeline dd83f69db7a21a6d64dcf79127463941 https://www.encodeproject.org/files/ENCFF994WPN/@@download/ENCFF994WPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF087DKT bed narrowPeak optimal idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF041ZBZ, ENCFF205ESY, ENCFF419RSJ, ENCFF613RZP 1596 ENCODE Processing Pipeline aaa4cd7a511a2274573a57a5586295e8 https://www.encodeproject.org/files/ENCFF087DKT/@@download/ENCFF087DKT.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF462AIJ bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF431ABA, ENCFF493QSH, ENCFF641CEP, ENCFF836GWP 6719439 ENCODE Processing Pipeline 634223dff2b5675f4d36b99a6a81cf23 https://www.encodeproject.org/files/ENCFF462AIJ/@@download/ENCFF462AIJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF548GKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF087DKT 78556 ENCODE Processing Pipeline 03b1d3bc23da0098d9c57392fd2398a4 https://www.encodeproject.org/files/ENCFF548GKJ/@@download/ENCFF548GKJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF827IBM bigBed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF985UBC 11098578 ENCODE Processing Pipeline fa8646d980a0b1276de4474ff32f56c0 https://www.encodeproject.org/files/ENCFF827IBM/@@download/ENCFF827IBM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF624NUZ bed narrowPeak optimal idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF462AIJ, ENCFF985UBC, ENCFF994WPN 1759 ENCODE Processing Pipeline 97e3f1c99bfc96e62aa8bf37eb565906 https://www.encodeproject.org/files/ENCFF624NUZ/@@download/ENCFF624NUZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF550DYZ bed narrowPeak conservative idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF462AIJ, ENCFF985UBC, ENCFF994WPN 1274 ENCODE Processing Pipeline 779adb01cef9b25d248c84e3e029663f https://www.encodeproject.org/files/ENCFF550DYZ/@@download/ENCFF550DYZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF265TAY bigBed narrowPeak optimal idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF624NUZ 78413 ENCODE Processing Pipeline 5a848e90e1e034870b2b6183d5c31942 https://www.encodeproject.org/files/ENCFF265TAY/@@download/ENCFF265TAY.bigBed hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF580LQK bigBed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF994WPN 13379488 ENCODE Processing Pipeline 4175bd63d661513c67db1f16559b033e https://www.encodeproject.org/files/ENCFF580LQK/@@download/ENCFF580LQK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF036WSL bigBed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF462AIJ 13453582 ENCODE Processing Pipeline cab5a87c2a61c6a29ab75982bdfcf88f https://www.encodeproject.org/files/ENCFF036WSL/@@download/ENCFF036WSL.bigBed hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF520GWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF550DYZ 23554 ENCODE Processing Pipeline 8657d2078e8e7c80924834910d8a2766 https://www.encodeproject.org/files/ENCFF520GWJ/@@download/ENCFF520GWJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF823MZR bam unfiltered alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF139CLF, ENCFF807MUK, ENCFF945QMW 7165164076 ENCODE Processing Pipeline 4e7c31265d597f90038946553664336c https://www.encodeproject.org/files/ENCFF823MZR/@@download/ENCFF823MZR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF751OZR bam unfiltered alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 100 ENCFF347VNR, ENCFF756MPL, ENCFF807MUK 6425336716 ENCODE Processing Pipeline 5cb7ab51d3a1b13746e9f020e54678f0 https://www.encodeproject.org/files/ENCFF751OZR/@@download/ENCFF751OZR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF945QMW fastq reads ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF139CLF 3460433604 Michael Snyder, Stanford 92d620c9872131a9a03031948321ec1a SRA:SRR5111829 https://www.encodeproject.org/files/ENCFF945QMW/@@download/ENCFF945QMW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, moderate library complexity ENCFF756MPL fastq reads ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF347VNR 3112604909 Michael Snyder, Stanford ece84c65e608ebf31cee9958e09a7ae5 SRA:SRR5111828 https://www.encodeproject.org/files/ENCFF756MPL/@@download/ENCFF756MPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, moderate library complexity ENCFF139CLF fastq reads ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF945QMW 3447442845 Michael Snyder, Stanford ee78560fdede19be09c8596d195de772 SRA:SRR5111829 https://www.encodeproject.org/files/ENCFF139CLF/@@download/ENCFF139CLF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, moderate library complexity ENCFF347VNR fastq reads ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF756MPL 3113566723 Michael Snyder, Stanford 7a355c06c87004de60d5ada6b0ee7245 SRA:SRR5111828 https://www.encodeproject.org/files/ENCFF347VNR/@@download/ENCFF347VNR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, moderate library complexity ENCFF767TZS bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 100 ENCFF347VNR, ENCFF756MPL, ENCFF807MUK 4874021482 ENCODE Processing Pipeline 72f070a4c5927a5a251df263cc4aa6ce https://www.encodeproject.org/files/ENCFF767TZS/@@download/ENCFF767TZS.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF011MCR bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF139CLF, ENCFF807MUK, ENCFF945QMW 5428997410 ENCODE Processing Pipeline b97fed0de7f8a91458e40d253bd4a82d https://www.encodeproject.org/files/ENCFF011MCR/@@download/ENCFF011MCR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF587FKZ bam unfiltered alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 100 ENCFF347VNR, ENCFF643CGH, ENCFF756MPL 6428483909 ENCODE Processing Pipeline 0fed56b421cd2b7f4e41edb07512edc3 https://www.encodeproject.org/files/ENCFF587FKZ/@@download/ENCFF587FKZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF704JZA bam unfiltered alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF139CLF, ENCFF643CGH, ENCFF945QMW 7169433210 ENCODE Processing Pipeline 1f537c041404f2892be9b34e6cd2f5c1 https://www.encodeproject.org/files/ENCFF704JZA/@@download/ENCFF704JZA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF799FNR bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 100 ENCFF347VNR, ENCFF643CGH, ENCFF756MPL 4876520938 ENCODE Processing Pipeline 615733282c87655a82cc6797e26079bf https://www.encodeproject.org/files/ENCFF799FNR/@@download/ENCFF799FNR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF856TBD bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF139CLF, ENCFF643CGH, ENCFF945QMW 5431077726 ENCODE Processing Pipeline 0f96ab1f2249e5dd4c0cbf35abeea77d https://www.encodeproject.org/files/ENCFF856TBD/@@download/ENCFF856TBD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF778MRQ bigWig signal p-value ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF856TBD, ENCFF910IKB 1292168320 ENCODE Processing Pipeline c09bdcd985aff4e9d375ccaab3095f67 https://www.encodeproject.org/files/ENCFF778MRQ/@@download/ENCFF778MRQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF905FXL bigWig signal p-value ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF227IZS, ENCFF799FNR 1051032117 ENCODE Processing Pipeline 18e5d3e5bf0e1c19220fb62f8ffd6f51 https://www.encodeproject.org/files/ENCFF905FXL/@@download/ENCFF905FXL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF654MFK bigWig signal p-value ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF799FNR, ENCFF856TBD, ENCFF910IKB 1863410853 ENCODE Processing Pipeline a09c99b24013847382139580915c64b2 https://www.encodeproject.org/files/ENCFF654MFK/@@download/ENCFF654MFK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF355ROT bigWig fold change over control ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF856TBD, ENCFF910IKB 1385407471 ENCODE Processing Pipeline 5a97c9de861b21eedec9b921d578670b https://www.encodeproject.org/files/ENCFF355ROT/@@download/ENCFF355ROT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF192KAR bigWig fold change over control ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF227IZS, ENCFF799FNR 1183104144 ENCODE Processing Pipeline c6bd435821dbbe37b43fe49816ede2ae https://www.encodeproject.org/files/ENCFF192KAR/@@download/ENCFF192KAR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF194DSG bigWig fold change over control ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF799FNR, ENCFF856TBD, ENCFF910IKB 2230682876 ENCODE Processing Pipeline d1867f695da43747f05e81c4e34652a7 https://www.encodeproject.org/files/ENCFF194DSG/@@download/ENCFF194DSG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF579YKA bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF856TBD, ENCFF910IKB 7161401 ENCODE Processing Pipeline a60372d54cb372c01713f0b394c2a9bf https://www.encodeproject.org/files/ENCFF579YKA/@@download/ENCFF579YKA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF019FWB bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF227IZS, ENCFF799FNR 7104401 ENCODE Processing Pipeline 69a5dbdc97d345ebba1768aa6b5c8c66 https://www.encodeproject.org/files/ENCFF019FWB/@@download/ENCFF019FWB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF458SHG bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF227IZS, ENCFF799FNR, ENCFF856TBD, ENCFF910IKB 7196613 ENCODE Processing Pipeline a38c8e65f2b5a2e84a025a362b85c425 https://www.encodeproject.org/files/ENCFF458SHG/@@download/ENCFF458SHG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF848QJP bigBed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF579YKA 13102889 ENCODE Processing Pipeline ba0d16b9e7c4393a7d736494628d2cca https://www.encodeproject.org/files/ENCFF848QJP/@@download/ENCFF848QJP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF605CSQ bigBed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF019FWB 12931899 ENCODE Processing Pipeline 60a7af3654ae80365134e754c862f648 https://www.encodeproject.org/files/ENCFF605CSQ/@@download/ENCFF605CSQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF493XLI bigBed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF458SHG 12824001 ENCODE Processing Pipeline dbbd7e991868ce223be5569c4f0fbfd2 https://www.encodeproject.org/files/ENCFF493XLI/@@download/ENCFF493XLI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF445RNG bed narrowPeak conservative idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF019FWB, ENCFF419RSJ, ENCFF458SHG, ENCFF579YKA 830188 ENCODE Processing Pipeline 13837091c6a6564bf9bd71dc2c3b0d6d https://www.encodeproject.org/files/ENCFF445RNG/@@download/ENCFF445RNG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF857TUM bigBed narrowPeak conservative idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF445RNG 1768646 ENCODE Processing Pipeline 86733735a1497f08c9dbb92d1193b278 https://www.encodeproject.org/files/ENCFF857TUM/@@download/ENCFF857TUM.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF423LPW bed narrowPeak optimal idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF019FWB, ENCFF419RSJ, ENCFF458SHG, ENCFF579YKA 963003 ENCODE Processing Pipeline 4b1841acd8c1d519ba0db7a6c19e4987 https://www.encodeproject.org/files/ENCFF423LPW/@@download/ENCFF423LPW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF356AWU bigBed narrowPeak optimal idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF423LPW 1994041 ENCODE Processing Pipeline db6b2e64373bc8be7feb0c001238c3e3 https://www.encodeproject.org/files/ENCFF356AWU/@@download/ENCFF356AWU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF472TXS bigWig signal p-value ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF011MCR, ENCFF051LWI, ENCFF581ZJL, ENCFF767TZS 1888914293 ENCODE Processing Pipeline a3c457e0c2a3318cba57d582c8f1f9d1 https://www.encodeproject.org/files/ENCFF472TXS/@@download/ENCFF472TXS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF890UUN bigWig fold change over control ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF011MCR, ENCFF051LWI, ENCFF581ZJL, ENCFF767TZS 2224432737 ENCODE Processing Pipeline d8976951c9f670288ec89cd31658e252 https://www.encodeproject.org/files/ENCFF890UUN/@@download/ENCFF890UUN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF106RFM bigWig signal p-value ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF011MCR, ENCFF581ZJL 1102462542 ENCODE Processing Pipeline a75f5ad1a49d7d9cf229351084018548 https://www.encodeproject.org/files/ENCFF106RFM/@@download/ENCFF106RFM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF861OMW bigWig fold change over control ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF011MCR, ENCFF581ZJL 1384007914 ENCODE Processing Pipeline eaa7e952c5ec533238e0d86c4e95e589 https://www.encodeproject.org/files/ENCFF861OMW/@@download/ENCFF861OMW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF799TPX bigBed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF471MPD 13064463 ENCODE Processing Pipeline 16bc87b2dbc3293c37c828d15a5dfe09 https://www.encodeproject.org/files/ENCFF799TPX/@@download/ENCFF799TPX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF489ALJ bigWig signal p-value ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF767TZS 1002544949 ENCODE Processing Pipeline 49b35e856e0bb4aa234c9666caed835b https://www.encodeproject.org/files/ENCFF489ALJ/@@download/ENCFF489ALJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF451MDI bigWig fold change over control ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF767TZS 1217150604 ENCODE Processing Pipeline ad1f680e1a273b7662578bd3f00f3179 https://www.encodeproject.org/files/ENCFF451MDI/@@download/ENCFF451MDI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF432DNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF314ULQ 2059618 ENCODE Processing Pipeline 83b544222f64cbcb9efb984418589049 https://www.encodeproject.org/files/ENCFF432DNZ/@@download/ENCFF432DNZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF848CIH bigBed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF875ISD 12960022 ENCODE Processing Pipeline bcef46bb25a648801ab2f7ff867e69b1 https://www.encodeproject.org/files/ENCFF848CIH/@@download/ENCFF848CIH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF026BYE bed narrowPeak conservative idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF471MPD, ENCFF706LNT, ENCFF875ISD 870467 ENCODE Processing Pipeline 3ec57cb9f9f1f3c024d9dbc233cf391a https://www.encodeproject.org/files/ENCFF026BYE/@@download/ENCFF026BYE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF471MPD bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF011MCR, ENCFF581ZJL 7133917 ENCODE Processing Pipeline eac7607be827468e48cf0c599196747a https://www.encodeproject.org/files/ENCFF471MPD/@@download/ENCFF471MPD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF706LNT bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF767TZS 7049612 ENCODE Processing Pipeline ff995f9cd1c55eec79946c18067b474a https://www.encodeproject.org/files/ENCFF706LNT/@@download/ENCFF706LNT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF875ISD bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF011MCR, ENCFF051LWI, ENCFF581ZJL, ENCFF767TZS 7320798 ENCODE Processing Pipeline 87a62b0c6b3efe0893fb3b22d77a4ae4 https://www.encodeproject.org/files/ENCFF875ISD/@@download/ENCFF875ISD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF323KHZ bigBed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF706LNT 12866135 ENCODE Processing Pipeline e413c2dd32f121f0e9602de17d450b81 https://www.encodeproject.org/files/ENCFF323KHZ/@@download/ENCFF323KHZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF686TUG bigBed narrowPeak conservative idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF026BYE 1827892 ENCODE Processing Pipeline 478f43ad474b5025cad1440cab39eaa5 https://www.encodeproject.org/files/ENCFF686TUG/@@download/ENCFF686TUG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF314ULQ bed narrowPeak optimal idr thresholded peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF471MPD, ENCFF706LNT, ENCFF875ISD 1006532 ENCODE Processing Pipeline 807407007c047f1cd624d59e5aff4373 https://www.encodeproject.org/files/ENCFF314ULQ/@@download/ENCFF314ULQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF957HCW fastq reads ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 775597599 Xiang-Dong Fu, UCSD 0f50c20209a2a6c00933064554c39914 https://www.encodeproject.org/files/ENCFF957HCW/@@download/ENCFF957HCW.fastq.gz Illumina HiSeq 2000 /files/ENCFF883CMB/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF530XYO fastq reads ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 641335358 Xiang-Dong Fu, UCSD aa14cf65c9701eeb87ddb3d8be318083 https://www.encodeproject.org/files/ENCFF530XYO/@@download/ENCFF530XYO.fastq.gz Illumina HiSeq 2000 /files/ENCFF526TGW/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF840WPW fastq reads ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 1 40 single-ended 1167162542 Xiang-Dong Fu, UCSD 983e97847e1a19b85d0c1c61893d3b2e https://www.encodeproject.org/files/ENCFF840WPW/@@download/ENCFF840WPW.fastq.gz Illumina HiSeq 2500 /files/ENCFF883CMB/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF103IDD fastq reads ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 1 40 single-ended 2132426536 Xiang-Dong Fu, UCSD 532d674b41fb2b568a577f71abf34f51 https://www.encodeproject.org/files/ENCFF103IDD/@@download/ENCFF103IDD.fastq.gz Illumina HiSeq 2500 /files/ENCFF526TGW/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF973TQW bam unfiltered alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF840WPW, ENCFF957HCW 1867667489 ENCODE Processing Pipeline 910dc1b32a8ad9a8dc2a61cb205640b7 https://www.encodeproject.org/files/ENCFF973TQW/@@download/ENCFF973TQW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF934JWS bam unfiltered alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF643CGH, ENCFF840WPW, ENCFF957HCW 1875266037 ENCODE Processing Pipeline 7b299b7c62f92a8623bda1da6406f56e https://www.encodeproject.org/files/ENCFF934JWS/@@download/ENCFF934JWS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF156XOZ bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF643CGH, ENCFF840WPW, ENCFF957HCW 545061442 ENCODE Processing Pipeline 67e5b14c34a0801d44e88c95e58f647e https://www.encodeproject.org/files/ENCFF156XOZ/@@download/ENCFF156XOZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF759DNX bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF840WPW, ENCFF957HCW 545728639 ENCODE Processing Pipeline a641b96bfc4b204da0e84a2f79da98d8 https://www.encodeproject.org/files/ENCFF759DNX/@@download/ENCFF759DNX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF302VZC bam unfiltered alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF103IDD, ENCFF530XYO, ENCFF643CGH 2747142224 ENCODE Processing Pipeline 677c6b118222d069a0e4379dfab05726 https://www.encodeproject.org/files/ENCFF302VZC/@@download/ENCFF302VZC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF418ACX bam unfiltered alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF103IDD, ENCFF530XYO, ENCFF807MUK 2736825227 ENCODE Processing Pipeline f9c45a1a24830cc555d7fc0fccadd123 https://www.encodeproject.org/files/ENCFF418ACX/@@download/ENCFF418ACX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF046DZK bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF103IDD, ENCFF530XYO, ENCFF643CGH 579847053 ENCODE Processing Pipeline 837105fd3757ce9b86e24e89a849e83b https://www.encodeproject.org/files/ENCFF046DZK/@@download/ENCFF046DZK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF019SDP bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF103IDD, ENCFF530XYO, ENCFF807MUK 580573981 ENCODE Processing Pipeline 1ae17c4dc45afc969be64738b1d9be00 https://www.encodeproject.org/files/ENCFF019SDP/@@download/ENCFF019SDP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF703CJH bigWig fold change over control ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF156XOZ, ENCFF659EXP, ENCFF872JOE 490944978 ENCODE Processing Pipeline f9cb7d44104bfa222a9f58c5d6381c3c https://www.encodeproject.org/files/ENCFF703CJH/@@download/ENCFF703CJH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF382ELQ bigWig signal p-value ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF046DZK, ENCFF156XOZ, ENCFF659EXP, ENCFF872JOE 1001149204 ENCODE Processing Pipeline 0387fb49ca05d1ee3970235b5a83ebc3 https://www.encodeproject.org/files/ENCFF382ELQ/@@download/ENCFF382ELQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF085HJH bigWig signal p-value ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF156XOZ, ENCFF659EXP, ENCFF872JOE 945697747 ENCODE Processing Pipeline 6adcd61db36ca56f1eeb905877a8905f https://www.encodeproject.org/files/ENCFF085HJH/@@download/ENCFF085HJH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF942GBL bigWig signal p-value ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF046DZK, ENCFF659EXP, ENCFF872JOE 813779811 ENCODE Processing Pipeline 44212e215976ec806fa768f8063be1b3 https://www.encodeproject.org/files/ENCFF942GBL/@@download/ENCFF942GBL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF581ZUQ bigWig fold change over control ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF046DZK, ENCFF659EXP, ENCFF872JOE 563645619 ENCODE Processing Pipeline 87b5ae1320caa229a638f958831fa8de https://www.encodeproject.org/files/ENCFF581ZUQ/@@download/ENCFF581ZUQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF683TLR bigWig fold change over control ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF046DZK, ENCFF156XOZ, ENCFF659EXP, ENCFF872JOE 784855800 ENCODE Processing Pipeline 28159371a52bee58e28c7b63c9dc5b51 https://www.encodeproject.org/files/ENCFF683TLR/@@download/ENCFF683TLR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF359WRP bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF156XOZ, ENCFF659EXP, ENCFF872JOE 6145120 ENCODE Processing Pipeline d47f54696b361fc579c84da677aaa7dc https://www.encodeproject.org/files/ENCFF359WRP/@@download/ENCFF359WRP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF726XRN bigBed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF293QPX 13219084 ENCODE Processing Pipeline c87903e13590cf5ba6860c1b0f2d6fa7 https://www.encodeproject.org/files/ENCFF726XRN/@@download/ENCFF726XRN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF959AKH bigBed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF359WRP 13187651 ENCODE Processing Pipeline 121e4ccd3f03a8aeb729fb35a7f36eb1 https://www.encodeproject.org/files/ENCFF959AKH/@@download/ENCFF959AKH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF116QSW bigBed narrowPeak optimal idr thresholded peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF718RXL 671366 ENCODE Processing Pipeline 741cef4c5f4d71358df5c63c247601c7 https://www.encodeproject.org/files/ENCFF116QSW/@@download/ENCFF116QSW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF292SVE bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF046DZK, ENCFF156XOZ, ENCFF659EXP, ENCFF872JOE 7005029 ENCODE Processing Pipeline e4051ef879d10da7c1aa4a43ce4cdba3 https://www.encodeproject.org/files/ENCFF292SVE/@@download/ENCFF292SVE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF747SGR bigBed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF292SVE 13109330 ENCODE Processing Pipeline 3c59266a74a9c1a0d342348dc1b8503d https://www.encodeproject.org/files/ENCFF747SGR/@@download/ENCFF747SGR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF718RXL bed narrowPeak optimal idr thresholded peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF292SVE, ENCFF293QPX, ENCFF359WRP, ENCFF419RSJ 346305 ENCODE Processing Pipeline faedcadc0a4e024980b1792bd751abb2 https://www.encodeproject.org/files/ENCFF718RXL/@@download/ENCFF718RXL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF293QPX bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF046DZK, ENCFF659EXP, ENCFF872JOE 5830748 ENCODE Processing Pipeline f0571fc208032bd1847726358dfabd36 https://www.encodeproject.org/files/ENCFF293QPX/@@download/ENCFF293QPX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF061RJA bigWig fold change over control ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 508188575 ENCODE Processing Pipeline 2b9b681fcbb07e91bcec8f23df3ecfbe https://www.encodeproject.org/files/ENCFF061RJA/@@download/ENCFF061RJA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF085QUT bigWig signal p-value ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 940557457 ENCODE Processing Pipeline 451b08af21f37f80e3d104d3b16b02c7 https://www.encodeproject.org/files/ENCFF085QUT/@@download/ENCFF085QUT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF868AXQ bigWig signal p-value ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF019SDP, ENCFF580VRU, ENCFF951UMF 817497681 ENCODE Processing Pipeline 4151929b994e3b97ca64db294c6941b3 https://www.encodeproject.org/files/ENCFF868AXQ/@@download/ENCFF868AXQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF441XKD bigWig fold change over control ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF019SDP, ENCFF580VRU, ENCFF951UMF 564993087 ENCODE Processing Pipeline 39375021143d3a1978d069e943bf5de0 https://www.encodeproject.org/files/ENCFF441XKD/@@download/ENCFF441XKD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF020CYV bigWig signal p-value ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF019SDP, ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 1103008341 ENCODE Processing Pipeline 2ad13c20733bf48a14adb73f1fa4c982 https://www.encodeproject.org/files/ENCFF020CYV/@@download/ENCFF020CYV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF715SJM bigWig fold change over control ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF019SDP, ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 779515916 ENCODE Processing Pipeline d51276b6169abed0dd04d1c2507bfb02 https://www.encodeproject.org/files/ENCFF715SJM/@@download/ENCFF715SJM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF252UJI bigBed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF762IGQ 13228051 ENCODE Processing Pipeline 37d0c69ca4bfbfc2d398c58bbe284a85 https://www.encodeproject.org/files/ENCFF252UJI/@@download/ENCFF252UJI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF626LJK bigBed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF137VXT 13098832 ENCODE Processing Pipeline f05c824f649837bcf5d80729cecb7c39 https://www.encodeproject.org/files/ENCFF626LJK/@@download/ENCFF626LJK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF287BBC bigBed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF853BNC 13172527 ENCODE Processing Pipeline 860f6ace596eb4b58e33224fbb1c6b65 https://www.encodeproject.org/files/ENCFF287BBC/@@download/ENCFF287BBC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF490ZAU bed narrowPeak optimal idr thresholded peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF001TDO, ENCFF137VXT, ENCFF762IGQ, ENCFF853BNC 346126 ENCODE Processing Pipeline 1e317e05556ff5fd386ff3b050195ef3 https://www.encodeproject.org/files/ENCFF490ZAU/@@download/ENCFF490ZAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF853BNC bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 6178340 ENCODE Processing Pipeline 7e4ad537c954428eea973644de103769 https://www.encodeproject.org/files/ENCFF853BNC/@@download/ENCFF853BNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF762IGQ bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF019SDP, ENCFF580VRU, ENCFF951UMF 6133889 ENCODE Processing Pipeline 455f7d09d9e43a51a9b8f881af54cf67 https://www.encodeproject.org/files/ENCFF762IGQ/@@download/ENCFF762IGQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF137VXT bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF019SDP, ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 7025490 ENCODE Processing Pipeline 14a3a32906fef9cb3175849e1504e21c https://www.encodeproject.org/files/ENCFF137VXT/@@download/ENCFF137VXT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF110TJN bigBed narrowPeak optimal idr thresholded peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF490ZAU 669413 ENCODE Processing Pipeline ea66dc28802712d6d26b83d3aa28872d https://www.encodeproject.org/files/ENCFF110TJN/@@download/ENCFF110TJN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF153XNI bam unfiltered alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEX, ENCFF807MUK 1200539167 ENCODE Processing Pipeline b8dcc7a54c8a975f8cf8ae91c8f8eff0 https://www.encodeproject.org/files/ENCFF153XNI/@@download/ENCFF153XNI.bam hg19 released low read length, borderline replicate concordance ENCFF553HCB bam unfiltered alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEY, ENCFF807MUK 1339498935 ENCODE Processing Pipeline 2e1a2c0041366b180b041bb4fd2fb0ff https://www.encodeproject.org/files/ENCFF553HCB/@@download/ENCFF553HCB.bam hg19 released low read length, borderline replicate concordance ENCFF836FYL bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 564808823 ENCODE Processing Pipeline 6239d5df603979f72af57ea00d756f5f https://www.encodeproject.org/files/ENCFF836FYL/@@download/ENCFF836FYL.bigWig hg19 released low read length, borderline replicate concordance ENCFF592UTJ bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 511591022 ENCODE Processing Pipeline 5e894d779745c5adf2b91c1cdd902da2 https://www.encodeproject.org/files/ENCFF592UTJ/@@download/ENCFF592UTJ.bigWig hg19 released low read length, borderline replicate concordance ENCFF414IYE bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 477616534 ENCODE Processing Pipeline 49c9f0e6595dda82f7919572040a1587 https://www.encodeproject.org/files/ENCFF414IYE/@@download/ENCFF414IYE.bigWig hg19 released low read length, borderline replicate concordance ENCFF866MJE bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 939745923 ENCODE Processing Pipeline 598f15a387877b9ab2a278d07f9cde48 https://www.encodeproject.org/files/ENCFF866MJE/@@download/ENCFF866MJE.bigWig hg19 released low read length, borderline replicate concordance ENCFF336FET bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 487856683 ENCODE Processing Pipeline 2021cf819678f8b00618663c625913b8 https://www.encodeproject.org/files/ENCFF336FET/@@download/ENCFF336FET.bigWig hg19 released low read length, borderline replicate concordance ENCFF186JXU bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 4948567 ENCODE Processing Pipeline 265da055467795a7eaa2550983ccbd02 https://www.encodeproject.org/files/ENCFF186JXU/@@download/ENCFF186JXU.bed.gz hg19 released low read length, borderline replicate concordance ENCFF235ECP bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF841ZJM 11013226 ENCODE Processing Pipeline 8a4c488b2dc9bd7262d721cdc2cfb075 https://www.encodeproject.org/files/ENCFF235ECP/@@download/ENCFF235ECP.bigBed hg19 released low read length, borderline replicate concordance ENCFF339WFE bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF594TUH 13433957 ENCODE Processing Pipeline 0c316a5c9297ff9174c0eb33c15f63a1 https://www.encodeproject.org/files/ENCFF339WFE/@@download/ENCFF339WFE.bigBed hg19 released low read length, borderline replicate concordance ENCFF514QBY bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 1070239988 ENCODE Processing Pipeline 88f090a1d17ef93318bca5157e085a60 https://www.encodeproject.org/files/ENCFF514QBY/@@download/ENCFF514QBY.bigWig hg19 released low read length, borderline replicate concordance ENCFF594TUH bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 6397068 ENCODE Processing Pipeline 82273fc91909318a5c18f1a98af9a88f https://www.encodeproject.org/files/ENCFF594TUH/@@download/ENCFF594TUH.bed.gz hg19 released low read length, borderline replicate concordance ENCFF733YYF bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF186JXU 10981798 ENCODE Processing Pipeline 7ac4fa62c9e86a04cb51322e10432b05 https://www.encodeproject.org/files/ENCFF733YYF/@@download/ENCFF733YYF.bigBed hg19 released low read length, borderline replicate concordance ENCFF259NPX bed narrowPeak conservative idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF186JXU, ENCFF594TUH, ENCFF841ZJM 38228 ENCODE Processing Pipeline a64123622ef4b94c7a67fb3b5120e4db https://www.encodeproject.org/files/ENCFF259NPX/@@download/ENCFF259NPX.bed.gz hg19 released low read length, borderline replicate concordance ENCFF841ZJM bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 4896452 ENCODE Processing Pipeline aaa5da43b96e4c70a786ea337a51f0ee https://www.encodeproject.org/files/ENCFF841ZJM/@@download/ENCFF841ZJM.bed.gz hg19 released low read length, borderline replicate concordance ENCFF811XCV bigBed narrowPeak conservative idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF259NPX 122835 ENCODE Processing Pipeline b507098e2bf69519cb04ce51f3d3d53a https://www.encodeproject.org/files/ENCFF811XCV/@@download/ENCFF811XCV.bigBed hg19 released low read length, borderline replicate concordance ENCFF048OIZ bed narrowPeak optimal idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF186JXU, ENCFF594TUH, ENCFF841ZJM 51870 ENCODE Processing Pipeline 0b13df6bf0e0f44b245b86c92814e49f https://www.encodeproject.org/files/ENCFF048OIZ/@@download/ENCFF048OIZ.bed.gz hg19 released low read length, borderline replicate concordance ENCFF002EEX fastq reads ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 828314629 Michael Snyder, Stanford a33ad8d74eb56a7c8a236ed9f9ee6cb4 SRA:SRR5112109 https://www.encodeproject.org/files/ENCFF002EEX/@@download/ENCFF002EEX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, borderline replicate concordance ENCFF002EEY fastq reads ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 933764346 Michael Snyder, Stanford 87c252b7796d3dc8da76873a863b89e8 SRA:SRR5112108 https://www.encodeproject.org/files/ENCFF002EEY/@@download/ENCFF002EEY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, borderline replicate concordance ENCFF117LYG bigBed narrowPeak optimal idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048OIZ 142306 ENCODE Processing Pipeline caa280246c00dc508b4797bd94ffad2a https://www.encodeproject.org/files/ENCFF117LYG/@@download/ENCFF117LYG.bigBed hg19 released low read length, borderline replicate concordance ENCFF355RGO bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEX, ENCFF807MUK 830360165 ENCODE Processing Pipeline 9585cb1ef9f7ecc6e3cd52706bfbb946 https://www.encodeproject.org/files/ENCFF355RGO/@@download/ENCFF355RGO.bam hg19 released low read length, borderline replicate concordance ENCFF136XHP bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEY, ENCFF807MUK 951731022 ENCODE Processing Pipeline e1a5dc84147aeef7d01f31849fdf3e5a https://www.encodeproject.org/files/ENCFF136XHP/@@download/ENCFF136XHP.bam hg19 released low read length, borderline replicate concordance ENCFF916KIG bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 559527715 ENCODE Processing Pipeline d4348d62b9ba5ca668da5d0d99be7d83 https://www.encodeproject.org/files/ENCFF916KIG/@@download/ENCFF916KIG.bigWig hg19 archived low read length, borderline replicate concordance ENCFF091CXO bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 478976443 ENCODE Processing Pipeline a58abd2b3dec3c6330cd42e373377b3e https://www.encodeproject.org/files/ENCFF091CXO/@@download/ENCFF091CXO.bigWig hg19 archived low read length, borderline replicate concordance ENCFF725FFJ bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 954710507 ENCODE Processing Pipeline bba5e31c407e7d63edb6a0a1c8fe54df https://www.encodeproject.org/files/ENCFF725FFJ/@@download/ENCFF725FFJ.bigWig hg19 archived low read length, borderline replicate concordance ENCFF841CET bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 492025402 ENCODE Processing Pipeline 66f45f7f8a62b977b98a570f3806c713 https://www.encodeproject.org/files/ENCFF841CET/@@download/ENCFF841CET.bigWig hg19 archived low read length, borderline replicate concordance ENCFF533JJE bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 5168158 ENCODE Processing Pipeline 0a40f43f66e87af77fa6b37d4e25d8ca https://www.encodeproject.org/files/ENCFF533JJE/@@download/ENCFF533JJE.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF836ZJA bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF965OFQ 11132556 ENCODE Processing Pipeline 4cf728581e11cf318165ca2dcf7433b1 https://www.encodeproject.org/files/ENCFF836ZJA/@@download/ENCFF836ZJA.bigBed hg19 archived low read length, borderline replicate concordance ENCFF403FIE bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 501356081 ENCODE Processing Pipeline aca946f65e5083027e40c2f730106105 https://www.encodeproject.org/files/ENCFF403FIE/@@download/ENCFF403FIE.bigWig hg19 archived low read length, borderline replicate concordance ENCFF585JRW bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 6606695 ENCODE Processing Pipeline 6bf3d8f04632c683cd7e18b182fce60b https://www.encodeproject.org/files/ENCFF585JRW/@@download/ENCFF585JRW.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF424UYP bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 1065996400 ENCODE Processing Pipeline 81c12f4db2d53c64a3757a41fe4ba923 https://www.encodeproject.org/files/ENCFF424UYP/@@download/ENCFF424UYP.bigWig hg19 archived low read length, borderline replicate concordance ENCFF105FZO bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF533JJE 11100326 ENCODE Processing Pipeline 9b121db85a7d154146a200951bea04f2 https://www.encodeproject.org/files/ENCFF105FZO/@@download/ENCFF105FZO.bigBed hg19 archived low read length, borderline replicate concordance ENCFF020WDT bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF585JRW 13442385 ENCODE Processing Pipeline 0c69857ba3ab2363fb32e9f2e26c2ce3 https://www.encodeproject.org/files/ENCFF020WDT/@@download/ENCFF020WDT.bigBed hg19 archived low read length, borderline replicate concordance ENCFF965OFQ bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 5138333 ENCODE Processing Pipeline ccd55d8ab868c1c9d2233bbe675e6445 https://www.encodeproject.org/files/ENCFF965OFQ/@@download/ENCFF965OFQ.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF163NLK bam unfiltered alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEX, ENCFF643CGH 1205856059 ENCODE Processing Pipeline ba6f4be32b7d76609c7ce011174f1bee https://www.encodeproject.org/files/ENCFF163NLK/@@download/ENCFF163NLK.bam GRCh38 released low read length, borderline replicate concordance ENCFF032TPO bam unfiltered alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEY, ENCFF643CGH 1345273481 ENCODE Processing Pipeline a12deeb5b79ca9fc81601e76ea23e628 https://www.encodeproject.org/files/ENCFF032TPO/@@download/ENCFF032TPO.bam GRCh38 released low read length, borderline replicate concordance ENCFF918CSI bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEX, ENCFF643CGH 829777510 ENCODE Processing Pipeline f14183f3f97b3d5125dc85ec8dd9e597 https://www.encodeproject.org/files/ENCFF918CSI/@@download/ENCFF918CSI.bam GRCh38 released low read length, borderline replicate concordance ENCFF110FDC bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEY, ENCFF643CGH 951086608 ENCODE Processing Pipeline f60eda69d0863bbdf45bfb6d8a454051 https://www.encodeproject.org/files/ENCFF110FDC/@@download/ENCFF110FDC.bam GRCh38 released low read length, borderline replicate concordance ENCFF533ZHY bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF110FDC, ENCFF156FED 661298837 ENCODE Processing Pipeline 8c216110e1dcd93455f7150f563a82eb https://www.encodeproject.org/files/ENCFF533ZHY/@@download/ENCFF533ZHY.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF003RZA bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF918CSI 627001782 ENCODE Processing Pipeline 95d155888d95966d3fd1d23e6039b82d https://www.encodeproject.org/files/ENCFF003RZA/@@download/ENCFF003RZA.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF564LPQ bigWig signal p-value ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF110FDC, ENCFF156FED, ENCFF577FNG, ENCFF918CSI 1095710354 ENCODE Processing Pipeline 95c263fccb9244a901900c80768ddab2 https://www.encodeproject.org/files/ENCFF564LPQ/@@download/ENCFF564LPQ.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF602CYQ bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF110FDC, ENCFF156FED 511552254 ENCODE Processing Pipeline 0e40d60050b32ba431aff4705e77f755 https://www.encodeproject.org/files/ENCFF602CYQ/@@download/ENCFF602CYQ.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF604PGE bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF918CSI 463580790 ENCODE Processing Pipeline 8b4927def7a536723b016e397868fdb1 https://www.encodeproject.org/files/ENCFF604PGE/@@download/ENCFF604PGE.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF376OMS bigWig fold change over control ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF110FDC, ENCFF156FED, ENCFF577FNG, ENCFF918CSI 1056441819 ENCODE Processing Pipeline 95ad9b18c0e504abb8835bd5a37b6b22 https://www.encodeproject.org/files/ENCFF376OMS/@@download/ENCFF376OMS.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF468IXU bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF918CSI 4909507 ENCODE Processing Pipeline 948c7e088d0b63d7a7e0c04949998116 https://www.encodeproject.org/files/ENCFF468IXU/@@download/ENCFF468IXU.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF639VZZ bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF110FDC, ENCFF156FED 4798606 ENCODE Processing Pipeline 86f56df383ec7eda19ddae203ff773f9 https://www.encodeproject.org/files/ENCFF639VZZ/@@download/ENCFF639VZZ.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF890SFW bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF110FDC, ENCFF156FED, ENCFF577FNG, ENCFF918CSI 6354971 ENCODE Processing Pipeline 91d82c0629b576a9b7d3824f68c61999 https://www.encodeproject.org/files/ENCFF890SFW/@@download/ENCFF890SFW.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF531HBZ bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF639VZZ 11025793 ENCODE Processing Pipeline bc02dcfe5862cc9af91ad60b4c4cac50 https://www.encodeproject.org/files/ENCFF531HBZ/@@download/ENCFF531HBZ.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF113PRG bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF468IXU 10949497 ENCODE Processing Pipeline a1a2e3f9e9f90dd663135c365d4e4c4a https://www.encodeproject.org/files/ENCFF113PRG/@@download/ENCFF113PRG.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF743AZY bigBed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF890SFW 13443236 ENCODE Processing Pipeline f37ffb3032f9d3dfa56afc8d8f279322 https://www.encodeproject.org/files/ENCFF743AZY/@@download/ENCFF743AZY.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF352DRR bed narrowPeak optimal idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF468IXU, ENCFF639VZZ, ENCFF890SFW 52553 ENCODE Processing Pipeline d1d7aba5f95aad6a5682208eec556e60 https://www.encodeproject.org/files/ENCFF352DRR/@@download/ENCFF352DRR.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF622QWM bigBed narrowPeak conservative idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF753LFL 124821 ENCODE Processing Pipeline 78cf362e8c9f0e51a4d485b24635fc6a https://www.encodeproject.org/files/ENCFF622QWM/@@download/ENCFF622QWM.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF753LFL bed narrowPeak conservative idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF468IXU, ENCFF639VZZ, ENCFF890SFW 38960 ENCODE Processing Pipeline 7edea7a982228e98681c36c5f0be1b9b https://www.encodeproject.org/files/ENCFF753LFL/@@download/ENCFF753LFL.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF024XJB bigBed narrowPeak optimal idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF352DRR 143823 ENCODE Processing Pipeline d9cdc1cbc4d54743a09194475dfdd655 https://www.encodeproject.org/files/ENCFF024XJB/@@download/ENCFF024XJB.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF427CNQ bed narrowPeak conservative idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF533JJE, ENCFF585JRW, ENCFF965OFQ 33839 ENCODE Processing Pipeline d99078965015adc3a09061142e13db44 https://www.encodeproject.org/files/ENCFF427CNQ/@@download/ENCFF427CNQ.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF625LFC bigBed narrowPeak conservative idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF427CNQ 95790 ENCODE Processing Pipeline d8c35801ce73bca2af9e850128566297 https://www.encodeproject.org/files/ENCFF625LFC/@@download/ENCFF625LFC.bigBed hg19 archived low read length, borderline replicate concordance ENCFF477YQY bigBed narrowPeak optimal idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF633VCV 108116 ENCODE Processing Pipeline 5feac29db25158b61aa0237a91df71c9 https://www.encodeproject.org/files/ENCFF477YQY/@@download/ENCFF477YQY.bigBed hg19 archived low read length, borderline replicate concordance ENCFF633VCV bed narrowPeak optimal idr thresholded peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF533JJE, ENCFF585JRW, ENCFF965OFQ 44104 ENCODE Processing Pipeline a3731781debd99421892562f126a3fee https://www.encodeproject.org/files/ENCFF633VCV/@@download/ENCFF633VCV.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF980NTK bam unfiltered alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 100 ENCFF089HKF, ENCFF405NMN, ENCFF807MUK 6930861211 ENCODE Processing Pipeline dbf6182484faf31b9e05dd2cf2138fe5 https://www.encodeproject.org/files/ENCFF980NTK/@@download/ENCFF980NTK.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF755OPG bam unfiltered alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 100 ENCFF746FPW, ENCFF807MUK, ENCFF822RJX 6309714871 ENCODE Processing Pipeline 59299736aad436adfef8f432c142cf17 https://www.encodeproject.org/files/ENCFF755OPG/@@download/ENCFF755OPG.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF405NMN fastq reads ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 1 100 paired-ended 2 ENCFF089HKF 3186043986 Michael Snyder, Stanford 2aaea94d9c64bb465a854ac1ac188e38 SRA:SRR6214073 https://www.encodeproject.org/files/ENCFF405NMN/@@download/ENCFF405NMN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released file validation error, antibody characterized with exemption mismatched file status ENCFF822RJX fastq reads ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 1 100 paired-ended 1 ENCFF746FPW 2821487321 Michael Snyder, Stanford 04c0110a1514c306a7d6de0cdc0c69a4 SRA:SRR6214072 https://www.encodeproject.org/files/ENCFF822RJX/@@download/ENCFF822RJX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released file validation error, antibody characterized with exemption mismatched file status ENCFF089HKF fastq reads ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 1 100 paired-ended 1 ENCFF405NMN 3102985186 Michael Snyder, Stanford a89a14d15955b521d06179eb55779434 SRA:SRR6214073 https://www.encodeproject.org/files/ENCFF089HKF/@@download/ENCFF089HKF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released file validation error, antibody characterized with exemption mismatched file status ENCFF746FPW fastq reads ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 1 100 paired-ended 2 ENCFF822RJX 2900259919 Michael Snyder, Stanford df2b9175188bb7fb2079a992e3a7efeb SRA:SRR6214072 https://www.encodeproject.org/files/ENCFF746FPW/@@download/ENCFF746FPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released file validation error, antibody characterized with exemption mismatched file status ENCFF059GQB bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 100 ENCFF746FPW, ENCFF807MUK, ENCFF822RJX 5266992966 ENCODE Processing Pipeline e00c99c00ef07247dfcbb7c56b8bdbd2 https://www.encodeproject.org/files/ENCFF059GQB/@@download/ENCFF059GQB.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF443ESH bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 100 ENCFF089HKF, ENCFF405NMN, ENCFF807MUK 5707697833 ENCODE Processing Pipeline a961cc4abd2245d7653a60923e949d21 https://www.encodeproject.org/files/ENCFF443ESH/@@download/ENCFF443ESH.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF412MKB bigWig signal p-value ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF443ESH, ENCFF449NNE 1207345602 ENCODE Processing Pipeline f472ccfd6aeadebd35a3b9ed07f2513e https://www.encodeproject.org/files/ENCFF412MKB/@@download/ENCFF412MKB.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF183NUX bigWig signal p-value ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF059GQB, ENCFF999EQI 1120401969 ENCODE Processing Pipeline 9d64befe68f3574fd758afa61526ac8a https://www.encodeproject.org/files/ENCFF183NUX/@@download/ENCFF183NUX.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF431OJO bigWig signal p-value ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF059GQB, ENCFF443ESH, ENCFF449NNE, ENCFF999EQI 1929777924 ENCODE Processing Pipeline 745f569ebbb69b352bb2d412645e7d05 https://www.encodeproject.org/files/ENCFF431OJO/@@download/ENCFF431OJO.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF563MQK bigWig fold change over control ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF443ESH, ENCFF449NNE 1337399810 ENCODE Processing Pipeline bf4fdb5aea37e5693412e75abbbd02c2 https://www.encodeproject.org/files/ENCFF563MQK/@@download/ENCFF563MQK.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF711FCY bigWig fold change over control ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF059GQB, ENCFF999EQI 1213937902 ENCODE Processing Pipeline dca4dda90cf83eb37f4b0184a314793e https://www.encodeproject.org/files/ENCFF711FCY/@@download/ENCFF711FCY.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF616AQN bigWig fold change over control ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF059GQB, ENCFF443ESH, ENCFF449NNE, ENCFF999EQI 2233524916 ENCODE Processing Pipeline 6ac486fdb5413b371fc8e7409b5efd03 https://www.encodeproject.org/files/ENCFF616AQN/@@download/ENCFF616AQN.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF055OAG bed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF443ESH, ENCFF449NNE 6464687 ENCODE Processing Pipeline 592502a2e8ca7230a2be6e7e8b687a0d https://www.encodeproject.org/files/ENCFF055OAG/@@download/ENCFF055OAG.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF308BSD bed narrowPeak optimal idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF001TDO, ENCFF055OAG, ENCFF215PIH, ENCFF861MQX 191379 ENCODE Processing Pipeline ff1f00b3d10b2d202ab46c6129027dc0 https://www.encodeproject.org/files/ENCFF308BSD/@@download/ENCFF308BSD.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF215PIH bed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF059GQB, ENCFF999EQI 6334076 ENCODE Processing Pipeline 4a16cab045de5d81bb2deae8c2e697a2 https://www.encodeproject.org/files/ENCFF215PIH/@@download/ENCFF215PIH.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF855YPM bigBed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF055OAG 11386728 ENCODE Processing Pipeline 583885c160046e12cdec44a74e9dc88f https://www.encodeproject.org/files/ENCFF855YPM/@@download/ENCFF855YPM.bigBed hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF861MQX bed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF059GQB, ENCFF443ESH, ENCFF449NNE, ENCFF999EQI 7175511 ENCODE Processing Pipeline c5ff70555edb24304a259355325552fd https://www.encodeproject.org/files/ENCFF861MQX/@@download/ENCFF861MQX.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF209MTO bigBed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF215PIH 11295187 ENCODE Processing Pipeline e954f44c0718bc942e4ed09077f6eb85 https://www.encodeproject.org/files/ENCFF209MTO/@@download/ENCFF209MTO.bigBed hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF914THM bed narrowPeak conservative idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF001TDO, ENCFF055OAG, ENCFF215PIH, ENCFF861MQX 116161 ENCODE Processing Pipeline 7d9195d536477da3180f890c0e9f2b85 https://www.encodeproject.org/files/ENCFF914THM/@@download/ENCFF914THM.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF972KHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF220YQP 406775 ENCODE Processing Pipeline e8f609ca462b880e7d823dbd01e4b036 https://www.encodeproject.org/files/ENCFF972KHJ/@@download/ENCFF972KHJ.bigBed hg19 released file validation error, antibody characterized with exemption mismatched status, mismatched file status ENCFF368GQR bigBed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF861MQX 11349444 ENCODE Processing Pipeline af6e8afd516ca09b14f3f4b07119e746 https://www.encodeproject.org/files/ENCFF368GQR/@@download/ENCFF368GQR.bigBed hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF430QVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF977TFF 237724 ENCODE Processing Pipeline 1855e9d48b8c8ebeb68e2001ba3604af https://www.encodeproject.org/files/ENCFF430QVZ/@@download/ENCFF430QVZ.bigBed hg19 released file validation error, antibody characterized with exemption mismatched status, mismatched file status ENCFF732MNX bam unfiltered alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 100 ENCFF643CGH, ENCFF746FPW, ENCFF822RJX 6322306682 ENCODE Processing Pipeline 2eaa7393b16e12402cb9265ff5e4012a https://www.encodeproject.org/files/ENCFF732MNX/@@download/ENCFF732MNX.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF137USO bam unfiltered alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 100 ENCFF089HKF, ENCFF405NMN, ENCFF643CGH 6944634704 ENCODE Processing Pipeline 68a5ddbaa4aab0baca250b17a8c42d69 https://www.encodeproject.org/files/ENCFF137USO/@@download/ENCFF137USO.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF034KOM bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 100 ENCFF643CGH, ENCFF746FPW, ENCFF822RJX 5280944573 ENCODE Processing Pipeline f3f54bf854f8e90ff92ddce8c60ede84 https://www.encodeproject.org/files/ENCFF034KOM/@@download/ENCFF034KOM.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF738SPX bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 100 ENCFF089HKF, ENCFF405NMN, ENCFF643CGH 5723889400 ENCODE Processing Pipeline ad3da9fdefebdc9c8fd04f87e784f2f5 https://www.encodeproject.org/files/ENCFF738SPX/@@download/ENCFF738SPX.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF104IJK bigWig signal p-value ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF190EPQ, ENCFF738SPX 1252571117 ENCODE Processing Pipeline 8c3f861a287a0460d9fa314f105a4de5 https://www.encodeproject.org/files/ENCFF104IJK/@@download/ENCFF104IJK.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF443IAV bigWig signal p-value ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF034KOM, ENCFF950AXC 1102874146 ENCODE Processing Pipeline 185fb8f4ac1dae88cec31f0b2691312f https://www.encodeproject.org/files/ENCFF443IAV/@@download/ENCFF443IAV.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF780CRS bigWig signal p-value ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF034KOM, ENCFF190EPQ, ENCFF738SPX, ENCFF950AXC 1653795317 ENCODE Processing Pipeline 8889bd24bcd704c13f7f59dfb2356565 https://www.encodeproject.org/files/ENCFF780CRS/@@download/ENCFF780CRS.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF796QTH bigWig fold change over control ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF190EPQ, ENCFF738SPX 1338852096 ENCODE Processing Pipeline ddfb846a546b0494692d219c965e302c https://www.encodeproject.org/files/ENCFF796QTH/@@download/ENCFF796QTH.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF063AHI bigWig fold change over control ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF034KOM, ENCFF950AXC 1148679053 ENCODE Processing Pipeline 2c3f660d04c86a98e3eb478f36ae1743 https://www.encodeproject.org/files/ENCFF063AHI/@@download/ENCFF063AHI.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF952IJH bigWig fold change over control ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF034KOM, ENCFF190EPQ, ENCFF738SPX, ENCFF950AXC 2204044111 ENCODE Processing Pipeline b2e842b40dece831b70f8671dd093ae6 https://www.encodeproject.org/files/ENCFF952IJH/@@download/ENCFF952IJH.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF707DCX bigBed narrowPeak optimal idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF611PIO 427843 ENCODE Processing Pipeline b5cc7865300ebc8baaac8ba55970a349 https://www.encodeproject.org/files/ENCFF707DCX/@@download/ENCFF707DCX.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF252QHX bed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF034KOM, ENCFF190EPQ, ENCFF738SPX, ENCFF950AXC 7169435 ENCODE Processing Pipeline 50548718adbfb6b402ae6fa97022ebed https://www.encodeproject.org/files/ENCFF252QHX/@@download/ENCFF252QHX.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF278FUN bigBed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF695QOW 11381920 ENCODE Processing Pipeline d18f36185362c2633a145add54b6f38d https://www.encodeproject.org/files/ENCFF278FUN/@@download/ENCFF278FUN.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF695QOW bed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 ENCFF190EPQ, ENCFF738SPX 6341898 ENCODE Processing Pipeline 2cf9aefabdad00e46222bb64bcd27099 https://www.encodeproject.org/files/ENCFF695QOW/@@download/ENCFF695QOW.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF428ZMF bed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF034KOM, ENCFF950AXC 6193970 ENCODE Processing Pipeline 72f552267d2c518f212acb355ccc9f4f https://www.encodeproject.org/files/ENCFF428ZMF/@@download/ENCFF428ZMF.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF487GZH bigBed narrowPeak conservative idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF856FOP 303418 ENCODE Processing Pipeline b9f8488ea4e119bbd678cc1d4c6bc0a2 https://www.encodeproject.org/files/ENCFF487GZH/@@download/ENCFF487GZH.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF611PIO bed narrowPeak optimal idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF252QHX, ENCFF419RSJ, ENCFF428ZMF, ENCFF695QOW 205631 ENCODE Processing Pipeline da6872e7b20ca1b0e6984b97d799e9d6 https://www.encodeproject.org/files/ENCFF611PIO/@@download/ENCFF611PIO.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF856FOP bed narrowPeak conservative idr thresholded peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF252QHX, ENCFF419RSJ, ENCFF428ZMF, ENCFF695QOW 125453 ENCODE Processing Pipeline 1edbbd0771b1d2220dd7651415c2deaa https://www.encodeproject.org/files/ENCFF856FOP/@@download/ENCFF856FOP.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF783JLM bigBed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 ENCFF428ZMF 11308452 ENCODE Processing Pipeline 0e1889af64b21c3699b5030111f4a8c8 https://www.encodeproject.org/files/ENCFF783JLM/@@download/ENCFF783JLM.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF330ILX bigBed narrowPeak peaks ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3, 4 ENCFF252QHX 11368866 ENCODE Processing Pipeline 89e62f09e40dd22897f28cd82ca87631 https://www.encodeproject.org/files/ENCFF330ILX/@@download/ENCFF330ILX.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF567HEJ fastq reads ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 1 76 paired-ended 1 ENCFF906TMX 1191814624 Bradley Bernstein, Broad ac578a619fd4b8983137aa611ce811a1 https://www.encodeproject.org/files/ENCFF567HEJ/@@download/ENCFF567HEJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF105BSH/, /files/ENCFF283SSQ/, /files/ENCFF377FRL/, /files/ENCFF601FJT/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF906TMX fastq reads ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 1 76 paired-ended 2 ENCFF567HEJ 1150995539 Bradley Bernstein, Broad 921d33884877b3e121dad22190a2b686 https://www.encodeproject.org/files/ENCFF906TMX/@@download/ENCFF906TMX.fastq.gz Illumina HiSeq 2500 /files/ENCFF048VZV/, /files/ENCFF729MHV/, /files/ENCFF751CCF/, /files/ENCFF865TXE/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF137ISZ fastq reads ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 1 76 paired-ended 1 ENCFF045UTX 1312341288 Bradley Bernstein, Broad 7ad3115d947802ddeb3e1c4bd5e525e3 https://www.encodeproject.org/files/ENCFF137ISZ/@@download/ENCFF137ISZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF274RNW/, /files/ENCFF460JSA/, /files/ENCFF569WIS/, /files/ENCFF780VKF/, /files/ENCFF888OQB/ released mild to moderate bottlenecking, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF045UTX fastq reads ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 1 76 paired-ended 2 ENCFF137ISZ 1272959408 Bradley Bernstein, Broad 5dd73ec441fe97441d833543225a2969 https://www.encodeproject.org/files/ENCFF045UTX/@@download/ENCFF045UTX.fastq.gz Illumina HiSeq 2500 /files/ENCFF203UWC/, /files/ENCFF219EFK/, /files/ENCFF716RUC/, /files/ENCFF996AET/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF408MUN bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 76 ENCFF567HEJ, ENCFF643CGH 603032948 ENCODE Processing Pipeline 808c68cdead552912fca7c937b5cdaf9 https://www.encodeproject.org/files/ENCFF408MUN/@@download/ENCFF408MUN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF604GBS bam unfiltered alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 76 ENCFF137ISZ, ENCFF807MUK 1570629752 ENCODE Processing Pipeline 7058cddf962be0391f7497580d459d7a https://www.encodeproject.org/files/ENCFF604GBS/@@download/ENCFF604GBS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF732ILX bam unfiltered alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 76 ENCFF137ISZ, ENCFF643CGH 1577205041 ENCODE Processing Pipeline c5093466b385a70e64a9bf64848a0e0b https://www.encodeproject.org/files/ENCFF732ILX/@@download/ENCFF732ILX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF911ZWN bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 76 ENCFF567HEJ, ENCFF807MUK 602796725 ENCODE Processing Pipeline 7606738becb3f0503cd894e6d5a4aea9 https://www.encodeproject.org/files/ENCFF911ZWN/@@download/ENCFF911ZWN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF148NWI bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 76 ENCFF137ISZ, ENCFF643CGH 678786114 ENCODE Processing Pipeline 9755a2497c24e1d4d58bad54948955c5 https://www.encodeproject.org/files/ENCFF148NWI/@@download/ENCFF148NWI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF920DIY bam unfiltered alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 76 ENCFF567HEJ, ENCFF807MUK 1427349502 ENCODE Processing Pipeline 87fd9da42fa0b0cb68f29d35f6304713 https://www.encodeproject.org/files/ENCFF920DIY/@@download/ENCFF920DIY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF232FJR bam unfiltered alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 76 ENCFF567HEJ, ENCFF643CGH 1432965029 ENCODE Processing Pipeline ad582d711488830d884e32bff51c4f06 https://www.encodeproject.org/files/ENCFF232FJR/@@download/ENCFF232FJR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF659TLW bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 76 ENCFF137ISZ, ENCFF807MUK 678460790 ENCODE Processing Pipeline 9b1a8d1b1855ce1bf7f09b675572d3c5 https://www.encodeproject.org/files/ENCFF659TLW/@@download/ENCFF659TLW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF508ITR bigWig fold change over control ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW 815372600 ENCODE Processing Pipeline b3c99c2473bd3ab1e2ad04e95539b578 https://www.encodeproject.org/files/ENCFF508ITR/@@download/ENCFF508ITR.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF037JTL bigWig signal p-value ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF911ZWN 1462604818 ENCODE Processing Pipeline 0659187323469d4f1af87814b823e42b https://www.encodeproject.org/files/ENCFF037JTL/@@download/ENCFF037JTL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF211IWS bigWig fold change over control ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW, ENCFF911ZWN 1296688523 ENCODE Processing Pipeline 4bd3d9a3d4027ff32894252c06d38c41 https://www.encodeproject.org/files/ENCFF211IWS/@@download/ENCFF211IWS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF135DCK bigBed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF878CWL 13337525 ENCODE Processing Pipeline c2a6efdad0acb478cc795c1c3150adc0 https://www.encodeproject.org/files/ENCFF135DCK/@@download/ENCFF135DCK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF623NEM bigWig signal p-value ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW 1522241102 ENCODE Processing Pipeline bc941e99c5e4a03dde039b73e7791861 https://www.encodeproject.org/files/ENCFF623NEM/@@download/ENCFF623NEM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF243WGS bigWig signal p-value ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW, ENCFF911ZWN 1557054403 ENCODE Processing Pipeline aa0142aed78560a271f1a478adb6904c https://www.encodeproject.org/files/ENCFF243WGS/@@download/ENCFF243WGS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF268ETX bigWig fold change over control ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF911ZWN 798556096 ENCODE Processing Pipeline 224339bcb3f02627109e6c6b3ead4e50 https://www.encodeproject.org/files/ENCFF268ETX/@@download/ENCFF268ETX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF878CWL bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW 5687086 ENCODE Processing Pipeline a2d65d75a886fbe48e31a444a2fd9610 https://www.encodeproject.org/files/ENCFF878CWL/@@download/ENCFF878CWL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF661PVV bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF911ZWN 6303156 ENCODE Processing Pipeline 0cf7ed584eb978b0fac7b02b8d9abe17 https://www.encodeproject.org/files/ENCFF661PVV/@@download/ENCFF661PVV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF486RTH bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW, ENCFF911ZWN 6864241 ENCODE Processing Pipeline 09fc227b8330b83781e14a23f1727c81 https://www.encodeproject.org/files/ENCFF486RTH/@@download/ENCFF486RTH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF896DOI bigBed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF661PVV 13036012 ENCODE Processing Pipeline 97156ef89131c1cf0173265405cf350c https://www.encodeproject.org/files/ENCFF896DOI/@@download/ENCFF896DOI.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF082EEL bigBed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF486RTH 13113780 ENCODE Processing Pipeline 063bd8366d312bc54ecfe8814540e7f6 https://www.encodeproject.org/files/ENCFF082EEL/@@download/ENCFF082EEL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF268LAI bed narrowPeak conservative idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF001TDO, ENCFF486RTH, ENCFF661PVV, ENCFF878CWL 139799 ENCODE Processing Pipeline 3270549b46c7417dea0697cd8988260b https://www.encodeproject.org/files/ENCFF268LAI/@@download/ENCFF268LAI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF243DSS bigBed narrowPeak conservative idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF268LAI 396971 ENCODE Processing Pipeline 17cc14fe8fe7c7e09e30f48c98786329 https://www.encodeproject.org/files/ENCFF243DSS/@@download/ENCFF243DSS.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF221ZIG bed narrowPeak optimal idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF001TDO, ENCFF486RTH, ENCFF661PVV, ENCFF878CWL 139515 ENCODE Processing Pipeline 41cd894388403b3786f034d4ed8bfea6 https://www.encodeproject.org/files/ENCFF221ZIG/@@download/ENCFF221ZIG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF039WRM bigBed narrowPeak optimal idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF221ZIG 398372 ENCODE Processing Pipeline 3cdc11a15d1dbe0b48388d0ea7a9db1a https://www.encodeproject.org/files/ENCFF039WRM/@@download/ENCFF039WRM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF960FLF bigWig signal p-value ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF027OMV, ENCFF148NWI, ENCFF322KCH, ENCFF408MUN 1489584844 ENCODE Processing Pipeline 8554fde58d37f34a295df74d7cb901cc https://www.encodeproject.org/files/ENCFF960FLF/@@download/ENCFF960FLF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF982FQK bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF027OMV, ENCFF148NWI, ENCFF322KCH 5454683 ENCODE Processing Pipeline 81d6f514dc519edc8ce10da0f8f50922 https://www.encodeproject.org/files/ENCFF982FQK/@@download/ENCFF982FQK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF166YGK bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF027OMV, ENCFF322KCH, ENCFF408MUN 5342140 ENCODE Processing Pipeline 3cba08ecefb0079aba703cc137c31a6b https://www.encodeproject.org/files/ENCFF166YGK/@@download/ENCFF166YGK.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF097USO bigWig fold change over control ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF027OMV, ENCFF148NWI, ENCFF322KCH 809872556 ENCODE Processing Pipeline 48945cd930edac38221f59284dcfb3cf https://www.encodeproject.org/files/ENCFF097USO/@@download/ENCFF097USO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF118NJY bigWig signal p-value ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF027OMV, ENCFF322KCH, ENCFF408MUN 1548224850 ENCODE Processing Pipeline d9c0c7454eef2083170426bd9813e77b https://www.encodeproject.org/files/ENCFF118NJY/@@download/ENCFF118NJY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF299WZD bigBed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF982FQK 10963375 ENCODE Processing Pipeline b678e92305e22cce14d365d3e4c53c88 https://www.encodeproject.org/files/ENCFF299WZD/@@download/ENCFF299WZD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF110YTB bigBed narrowPeak conservative idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF114RVY 385892 ENCODE Processing Pipeline cee3469917cb73847725020ce7109bb1 https://www.encodeproject.org/files/ENCFF110YTB/@@download/ENCFF110YTB.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF926KSP bigWig signal p-value ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF027OMV, ENCFF148NWI, ENCFF322KCH 1414463154 ENCODE Processing Pipeline ff63194979513410b3cc9fdbef817e93 https://www.encodeproject.org/files/ENCFF926KSP/@@download/ENCFF926KSP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF514CBD bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF027OMV, ENCFF148NWI, ENCFF322KCH, ENCFF408MUN 6694306 ENCODE Processing Pipeline 532233467153bd579e5b586d46bb4ec5 https://www.encodeproject.org/files/ENCFF514CBD/@@download/ENCFF514CBD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF105RCM bigBed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF166YGK 11987580 ENCODE Processing Pipeline 0bee91eff620854b4bd197569610eb31 https://www.encodeproject.org/files/ENCFF105RCM/@@download/ENCFF105RCM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF114RVY bed narrowPeak conservative idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF166YGK, ENCFF419RSJ, ENCFF514CBD, ENCFF982FQK 131582 ENCODE Processing Pipeline 8cfd4435218e7b83b99999bed1df24cc https://www.encodeproject.org/files/ENCFF114RVY/@@download/ENCFF114RVY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF189RVN bigBed narrowPeak optimal idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF976SAN 409672 ENCODE Processing Pipeline 4c8876e53b8deff67cb1bd6e7dadbb2b https://www.encodeproject.org/files/ENCFF189RVN/@@download/ENCFF189RVN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF317KPB bigWig fold change over control ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF027OMV, ENCFF322KCH, ENCFF408MUN 794453998 ENCODE Processing Pipeline 7d4fadd4a9819ee6fc9aa493366ea0f4 https://www.encodeproject.org/files/ENCFF317KPB/@@download/ENCFF317KPB.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF160ISV bigWig fold change over control ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF027OMV, ENCFF148NWI, ENCFF322KCH, ENCFF408MUN 1295180488 ENCODE Processing Pipeline 729927ed79688da27bec1700429f6109 https://www.encodeproject.org/files/ENCFF160ISV/@@download/ENCFF160ISV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF359TIY bigBed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF514CBD 13142995 ENCODE Processing Pipeline 89d8c74978134fefa8f9853364409752 https://www.encodeproject.org/files/ENCFF359TIY/@@download/ENCFF359TIY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF976SAN bed narrowPeak optimal idr thresholded peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1, 2 ENCFF166YGK, ENCFF419RSJ, ENCFF514CBD, ENCFF982FQK 140491 ENCODE Processing Pipeline c7c1bdbf076d3b012463618989f2d6be https://www.encodeproject.org/files/ENCFF976SAN/@@download/ENCFF976SAN.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF708KIW bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF713GZG, ENCFF807MUK 4391620798 ENCODE Processing Pipeline 28f350600b7e3a160db7ff69bd4474e9 https://www.encodeproject.org/files/ENCFF708KIW/@@download/ENCFF708KIW.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF128ARE bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF807MUK 4337209150 ENCODE Processing Pipeline bd4662692252bf4472ac36db3f377f40 https://www.encodeproject.org/files/ENCFF128ARE/@@download/ENCFF128ARE.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF156KWQ fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 2 ENCFF385BNN 2100546608 Michael Snyder, Stanford b0a7c0357f54a8fa55a0e3d5218d3a59 SRA:SRR6213569 https://www.encodeproject.org/files/ENCFF156KWQ/@@download/ENCFF156KWQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF385BNN fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 1 100 paired-ended 1 ENCFF156KWQ 2077437853 Michael Snyder, Stanford 903f9ac13a6ce846549703be657a760a SRA:SRR6213569 https://www.encodeproject.org/files/ENCFF385BNN/@@download/ENCFF385BNN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF009PBB fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 1 ENCFF713GZG 2051102198 Michael Snyder, Stanford 4da6e98ac41c8d12166bc4530dddbdcf SRA:SRR6213570 https://www.encodeproject.org/files/ENCFF009PBB/@@download/ENCFF009PBB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF713GZG fastq reads ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 1 100 paired-ended 2 ENCFF009PBB 2070188554 Michael Snyder, Stanford 23402ba114682f46adeb235b9ca2d3fa SRA:SRR6213570 https://www.encodeproject.org/files/ENCFF713GZG/@@download/ENCFF713GZG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF986RIG bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF807MUK 3193155806 ENCODE Processing Pipeline 062909f89701baeddaa3e727bb4d0be8 https://www.encodeproject.org/files/ENCFF986RIG/@@download/ENCFF986RIG.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF638SXI bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF713GZG, ENCFF807MUK 3358236632 ENCODE Processing Pipeline 9a6e64e13e728fd1e3392c30748bd165 https://www.encodeproject.org/files/ENCFF638SXI/@@download/ENCFF638SXI.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF527QCD bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 1013077768 ENCODE Processing Pipeline 6a01594a3b6d3941fdb4136040b6b9a0 https://www.encodeproject.org/files/ENCFF527QCD/@@download/ENCFF527QCD.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF688JNM bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 1001994634 ENCODE Processing Pipeline bb73b3940afffd17061ecccf97e51242 https://www.encodeproject.org/files/ENCFF688JNM/@@download/ENCFF688JNM.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF313RSD bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF287SKW, ENCFF638SXI, ENCFF941TZZ, ENCFF986RIG 1579213091 ENCODE Processing Pipeline 2dc7068ebfad43f3ebe1c5fc80dd4103 https://www.encodeproject.org/files/ENCFF313RSD/@@download/ENCFF313RSD.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF168VEC bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 1036047740 ENCODE Processing Pipeline b9c3be2db639212a99a6fd76accdc65d https://www.encodeproject.org/files/ENCFF168VEC/@@download/ENCFF168VEC.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF185JWK bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 968443510 ENCODE Processing Pipeline e89d21a86aef030e3489c882c7c04c13 https://www.encodeproject.org/files/ENCFF185JWK/@@download/ENCFF185JWK.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF389ZFU bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF287SKW, ENCFF638SXI, ENCFF941TZZ, ENCFF986RIG 1934051946 ENCODE Processing Pipeline e2a3ed8e4eadfe21f4f6e3659dbf3da0 https://www.encodeproject.org/files/ENCFF389ZFU/@@download/ENCFF389ZFU.bigWig hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF355VTC bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 6873273 ENCODE Processing Pipeline bd46a08ed077ace5b8107ccd58e88758 https://www.encodeproject.org/files/ENCFF355VTC/@@download/ENCFF355VTC.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF967CAZ bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 6954200 ENCODE Processing Pipeline 8b447b898ea55dce473bff838c277fe9 https://www.encodeproject.org/files/ENCFF967CAZ/@@download/ENCFF967CAZ.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF835NAG bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF355VTC 13089800 ENCODE Processing Pipeline 8d51390efe9bbbcb776e05a69a5fe82b https://www.encodeproject.org/files/ENCFF835NAG/@@download/ENCFF835NAG.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF747HDW bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF287SKW, ENCFF638SXI, ENCFF941TZZ, ENCFF986RIG 7010928 ENCODE Processing Pipeline 66d366b0c77c5e889377fb1a23c00b6f https://www.encodeproject.org/files/ENCFF747HDW/@@download/ENCFF747HDW.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF657ZCP bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF967CAZ 12784218 ENCODE Processing Pipeline 4b45b24487b8fa9927db6b5443146797 https://www.encodeproject.org/files/ENCFF657ZCP/@@download/ENCFF657ZCP.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF991EIM bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF747HDW 12557389 ENCODE Processing Pipeline f04b08368bac5e29975ba5bce7ffdaa3 https://www.encodeproject.org/files/ENCFF991EIM/@@download/ENCFF991EIM.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF493CKV bigBed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF994AJY 1558078 ENCODE Processing Pipeline ece3072884642e3030712ce6bfe7cd83 https://www.encodeproject.org/files/ENCFF493CKV/@@download/ENCFF493CKV.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched status, mismatched file status ENCFF739VBA bed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF355VTC, ENCFF747HDW, ENCFF967CAZ 705800 ENCODE Processing Pipeline ec5a897f10c3d09972e5e87ace8881fe https://www.encodeproject.org/files/ENCFF739VBA/@@download/ENCFF739VBA.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF456FQB bed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF001TDO, ENCFF355VTC, ENCFF747HDW, ENCFF967CAZ 832809 ENCODE Processing Pipeline 6b113719c6955fcab69d5d9844245c7c https://www.encodeproject.org/files/ENCFF456FQB/@@download/ENCFF456FQB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF290UXK bigBed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF542RSN 1774662 ENCODE Processing Pipeline 40eec2f0c938ad429e8fc2b4b08b790a https://www.encodeproject.org/files/ENCFF290UXK/@@download/ENCFF290UXK.bigBed hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched status, mismatched file status ENCFF673ZOT bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF643CGH, ENCFF713GZG 4392445511 ENCODE Processing Pipeline a1a870a396bfc76b0e22a2e9a078baa6 https://www.encodeproject.org/files/ENCFF673ZOT/@@download/ENCFF673ZOT.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF071AWI bam unfiltered alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF643CGH 4337373521 ENCODE Processing Pipeline 65e234ce98f4ec4b667405342ea8437d https://www.encodeproject.org/files/ENCFF071AWI/@@download/ENCFF071AWI.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF869PJB bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF643CGH, ENCFF713GZG 3367021605 ENCODE Processing Pipeline cb921f27a6f78bb38aac0c5654b65efd https://www.encodeproject.org/files/ENCFF869PJB/@@download/ENCFF869PJB.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF476WPJ bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF643CGH 3199068771 ENCODE Processing Pipeline ed3ae697d4b13b8c6ca33618f3244b4a https://www.encodeproject.org/files/ENCFF476WPJ/@@download/ENCFF476WPJ.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF055EZY bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF869PJB, ENCFF879YMO 987598898 ENCODE Processing Pipeline 4f2d99f45b82e3dd654d4bbf38c64a3c https://www.encodeproject.org/files/ENCFF055EZY/@@download/ENCFF055EZY.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF217AOO bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF476WPJ, ENCFF574BGV 1045914198 ENCODE Processing Pipeline 7a6df233d38035c1b4b1b20f1e7c18e0 https://www.encodeproject.org/files/ENCFF217AOO/@@download/ENCFF217AOO.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF078RYC bigWig signal p-value ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF476WPJ, ENCFF574BGV, ENCFF869PJB, ENCFF879YMO 1695542506 ENCODE Processing Pipeline 9c07ebcd950e21b1a3a0b2b0c96c8a5f https://www.encodeproject.org/files/ENCFF078RYC/@@download/ENCFF078RYC.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF684GRP bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF869PJB, ENCFF879YMO 1036819788 ENCODE Processing Pipeline c134d3fd33951608d20a8d7fd8a5c3cd https://www.encodeproject.org/files/ENCFF684GRP/@@download/ENCFF684GRP.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF569ATE bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF476WPJ, ENCFF574BGV 949047697 ENCODE Processing Pipeline 3cf35f9e6bd7c249cf84a652ee013fdf https://www.encodeproject.org/files/ENCFF569ATE/@@download/ENCFF569ATE.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF621JFM bigWig fold change over control ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF476WPJ, ENCFF574BGV, ENCFF869PJB, ENCFF879YMO 1943221489 ENCODE Processing Pipeline bde9ba33d13537116e6c8836b1a67dc0 https://www.encodeproject.org/files/ENCFF621JFM/@@download/ENCFF621JFM.bigWig GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF568GKT bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF476WPJ, ENCFF574BGV 6948509 ENCODE Processing Pipeline 6868eacb0bc15eff55b62234ff2cd487 https://www.encodeproject.org/files/ENCFF568GKT/@@download/ENCFF568GKT.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF452OXX bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF869PJB, ENCFF879YMO 6891919 ENCODE Processing Pipeline 395fdd75ce57c797fc714b2d54fbb37a https://www.encodeproject.org/files/ENCFF452OXX/@@download/ENCFF452OXX.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF212XGY bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF452OXX 13170229 ENCODE Processing Pipeline 74dd5e227eca21c125011930e280d041 https://www.encodeproject.org/files/ENCFF212XGY/@@download/ENCFF212XGY.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF613TWO bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF568GKT 12843324 ENCODE Processing Pipeline 4f8d558e296f71d31cb926c4b77db918 https://www.encodeproject.org/files/ENCFF613TWO/@@download/ENCFF613TWO.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF832IJM bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF476WPJ, ENCFF574BGV, ENCFF869PJB, ENCFF879YMO 7017285 ENCODE Processing Pipeline 68a86cd8ad55d101a31614cd610d7634 https://www.encodeproject.org/files/ENCFF832IJM/@@download/ENCFF832IJM.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF192MYZ bed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF452OXX, ENCFF568GKT, ENCFF832IJM 705777 ENCODE Processing Pipeline ab248c0e8372c589358ed9428744a0a1 https://www.encodeproject.org/files/ENCFF192MYZ/@@download/ENCFF192MYZ.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF347ZTM bigBed narrowPeak conservative idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF192MYZ 1560057 ENCODE Processing Pipeline 260820a7c4fbd818e0ba3da7f6c63bf6 https://www.encodeproject.org/files/ENCFF347ZTM/@@download/ENCFF347ZTM.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF598CRI bigBed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF832IJM 12575374 ENCODE Processing Pipeline d2e9311bec4d5ec0952929f4abad608d https://www.encodeproject.org/files/ENCFF598CRI/@@download/ENCFF598CRI.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF105YDI bed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF452OXX, ENCFF568GKT, ENCFF832IJM 832280 ENCODE Processing Pipeline 88b113cd67e84cd0d0416860fa012590 https://www.encodeproject.org/files/ENCFF105YDI/@@download/ENCFF105YDI.bed.gz GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF475FDM bigBed narrowPeak optimal idr thresholded peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1, 2 ENCFF105YDI 1779825 ENCODE Processing Pipeline 751e0daaf72968e83e9be311b5778b69 https://www.encodeproject.org/files/ENCFF475FDM/@@download/ENCFF475FDM.bigBed GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF588QLY fastq reads ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF305TCY 2672632868 Michael Snyder, Stanford 471801e914355166da487f07d9a881ed SRA:SRR5112044 https://www.encodeproject.org/files/ENCFF588QLY/@@download/ENCFF588QLY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF151IBJ fastq reads ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF113SKG 3564348719 Michael Snyder, Stanford b503f85cec65582958e079daa7f3dca5 SRA:SRR5112045 https://www.encodeproject.org/files/ENCFF151IBJ/@@download/ENCFF151IBJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF305TCY fastq reads ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF588QLY 2742737835 Michael Snyder, Stanford e4fa5b97767a66b98fab09455e81a8b0 SRA:SRR5112044 https://www.encodeproject.org/files/ENCFF305TCY/@@download/ENCFF305TCY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF113SKG fastq reads ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF151IBJ 3639412944 Michael Snyder, Stanford 8fd0f91dc18714b66d5f0361c30741ab SRA:SRR5112045 https://www.encodeproject.org/files/ENCFF113SKG/@@download/ENCFF113SKG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF911TNQ bam unfiltered alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF305TCY, ENCFF588QLY, ENCFF643CGH 5974295604 ENCODE Processing Pipeline 0e8aebca721bacc291a96d95be072dd0 https://www.encodeproject.org/files/ENCFF911TNQ/@@download/ENCFF911TNQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF607JFD bam unfiltered alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF113SKG, ENCFF151IBJ, ENCFF643CGH 7754247607 ENCODE Processing Pipeline f1197f47ddde04512dec8a0f209138f7 https://www.encodeproject.org/files/ENCFF607JFD/@@download/ENCFF607JFD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF250NHK bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF305TCY, ENCFF588QLY, ENCFF643CGH 5231358110 ENCODE Processing Pipeline db8e10827099716e8258dead11503780 https://www.encodeproject.org/files/ENCFF250NHK/@@download/ENCFF250NHK.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF131NUZ bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF113SKG, ENCFF151IBJ, ENCFF643CGH 6704349338 ENCODE Processing Pipeline e0b6d275f3b021a3760a53e97a293510 https://www.encodeproject.org/files/ENCFF131NUZ/@@download/ENCFF131NUZ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF309IOO bam unfiltered alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF305TCY, ENCFF588QLY, ENCFF807MUK 5967950990 ENCODE Processing Pipeline 90280623184bb4b8441bc944cc69bf12 https://www.encodeproject.org/files/ENCFF309IOO/@@download/ENCFF309IOO.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF591LDI bam unfiltered alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF113SKG, ENCFF151IBJ, ENCFF807MUK 7746395132 ENCODE Processing Pipeline 004889e03f9dd008a6a39a7caabd01e1 https://www.encodeproject.org/files/ENCFF591LDI/@@download/ENCFF591LDI.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF304KBG bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF305TCY, ENCFF588QLY, ENCFF807MUK 5228054786 ENCODE Processing Pipeline 7fc3402df336099799864bd9bc63374d https://www.encodeproject.org/files/ENCFF304KBG/@@download/ENCFF304KBG.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF851EXP bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF113SKG, ENCFF151IBJ, ENCFF807MUK 6699765013 ENCODE Processing Pipeline cf8c63286e218991f45c1f89fe6a5228 https://www.encodeproject.org/files/ENCFF851EXP/@@download/ENCFF851EXP.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF187UFH bigWig signal p-value ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF851EXP 1541908376 ENCODE Processing Pipeline e42454903cc3056d833013c1b385174f https://www.encodeproject.org/files/ENCFF187UFH/@@download/ENCFF187UFH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF772PVG bigWig signal p-value ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF304KBG 1264471551 ENCODE Processing Pipeline fe1ceaa93c684927a7bf5a3f786409fb https://www.encodeproject.org/files/ENCFF772PVG/@@download/ENCFF772PVG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF505TRR bigWig signal p-value ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF304KBG, ENCFF851EXP 1966362047 ENCODE Processing Pipeline 04b5608caec11144761240ce475f8eea https://www.encodeproject.org/files/ENCFF505TRR/@@download/ENCFF505TRR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF984CRG bigWig fold change over control ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF851EXP 1707473565 ENCODE Processing Pipeline de23b0c935046022bfbad019b793631c https://www.encodeproject.org/files/ENCFF984CRG/@@download/ENCFF984CRG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF980WBO bigWig fold change over control ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF304KBG 1472094234 ENCODE Processing Pipeline 37afaaf7c58b8b0d017e2f8d6d9aef63 https://www.encodeproject.org/files/ENCFF980WBO/@@download/ENCFF980WBO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF649VIZ bigWig fold change over control ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF304KBG, ENCFF851EXP 2202158630 ENCODE Processing Pipeline 48aeef321876044504920a6e5919d769 https://www.encodeproject.org/files/ENCFF649VIZ/@@download/ENCFF649VIZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF945QWD bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF851EXP 6665928 ENCODE Processing Pipeline 379294826f69174b4b4dab69b67e1312 https://www.encodeproject.org/files/ENCFF945QWD/@@download/ENCFF945QWD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF270KMF bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF304KBG 6361864 ENCODE Processing Pipeline 878c9c36dcd290a76f533f06f996aeb1 https://www.encodeproject.org/files/ENCFF270KMF/@@download/ENCFF270KMF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF954VVY bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF304KBG, ENCFF851EXP 7116628 ENCODE Processing Pipeline da45b716879cc52bcbcd91dfc6679230 https://www.encodeproject.org/files/ENCFF954VVY/@@download/ENCFF954VVY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF202QOF bigBed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF945QWD 11423530 ENCODE Processing Pipeline 19f76b239bfbc8a3b3b7b542e472589d https://www.encodeproject.org/files/ENCFF202QOF/@@download/ENCFF202QOF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF813WQJ bigBed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF270KMF 11338488 ENCODE Processing Pipeline 15a57cd1084e18bd29090a14a86f21e7 https://www.encodeproject.org/files/ENCFF813WQJ/@@download/ENCFF813WQJ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF961OYQ bigBed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF954VVY 11342167 ENCODE Processing Pipeline e513f169a0b8f992681db4cd6723d2d1 https://www.encodeproject.org/files/ENCFF961OYQ/@@download/ENCFF961OYQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF604WLL bed narrowPeak conservative idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF270KMF, ENCFF945QWD, ENCFF954VVY 25538 ENCODE Processing Pipeline bb7cef666469f199716824306a076416 https://www.encodeproject.org/files/ENCFF604WLL/@@download/ENCFF604WLL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF360MPK bigBed narrowPeak conservative idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF604WLL 81693 ENCODE Processing Pipeline 642352992147c85de0ee1624c76bff2d https://www.encodeproject.org/files/ENCFF360MPK/@@download/ENCFF360MPK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF942VHF bed narrowPeak optimal idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF270KMF, ENCFF945QWD, ENCFF954VVY 47154 ENCODE Processing Pipeline 70ac5e7f039e839dfbc4fe2ad7dcb2e0 https://www.encodeproject.org/files/ENCFF942VHF/@@download/ENCFF942VHF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF255FBK bigBed narrowPeak optimal idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF942VHF 130964 ENCODE Processing Pipeline ec9f40d9baf38d43d8aadd4aac3bff66 https://www.encodeproject.org/files/ENCFF255FBK/@@download/ENCFF255FBK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF507OMD bigWig signal p-value ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF131NUZ 1305001274 ENCODE Processing Pipeline c9890b9b2777266e484e725cc51fd6d3 https://www.encodeproject.org/files/ENCFF507OMD/@@download/ENCFF507OMD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF329SQC bigWig signal p-value ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF250NHK 1377375433 ENCODE Processing Pipeline 844abd5bba529ef534018ecaf66ced78 https://www.encodeproject.org/files/ENCFF329SQC/@@download/ENCFF329SQC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF642SZV bigWig signal p-value ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF131NUZ, ENCFF250NHK 1978281643 ENCODE Processing Pipeline 328e1b0e8fb18898df727f3772438ec3 https://www.encodeproject.org/files/ENCFF642SZV/@@download/ENCFF642SZV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF094CKY bigWig fold change over control ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF131NUZ 1696334855 ENCODE Processing Pipeline 89475de5e42b777cdb8eaff1a45ec64f https://www.encodeproject.org/files/ENCFF094CKY/@@download/ENCFF094CKY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF037MJA bigWig fold change over control ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF250NHK 1468891550 ENCODE Processing Pipeline 0f7ee39f42a19278b6fdc1d71c1925a9 https://www.encodeproject.org/files/ENCFF037MJA/@@download/ENCFF037MJA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF981MMQ bigWig fold change over control ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF131NUZ, ENCFF250NHK 2217534507 ENCODE Processing Pipeline 19bccc423a437a9d42ae9090bced98f5 https://www.encodeproject.org/files/ENCFF981MMQ/@@download/ENCFF981MMQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF972XCP bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF250NHK 6229436 ENCODE Processing Pipeline 468926363b675ad3cd191eecfcfff8aa https://www.encodeproject.org/files/ENCFF972XCP/@@download/ENCFF972XCP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF397EGL bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF131NUZ 6500830 ENCODE Processing Pipeline a1a8ed053e92fd6d26f0c18d170f8f02 https://www.encodeproject.org/files/ENCFF397EGL/@@download/ENCFF397EGL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF377CKR bigBed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF397EGL 11437240 ENCODE Processing Pipeline f80cf9052ed6bdd0c8eb3e21995cfe8b https://www.encodeproject.org/files/ENCFF377CKR/@@download/ENCFF377CKR.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF088OFP bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF131NUZ, ENCFF250NHK 7051065 ENCODE Processing Pipeline 8dc06725f0fc09cd4895b14f919dc5e5 https://www.encodeproject.org/files/ENCFF088OFP/@@download/ENCFF088OFP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF984RVM bed narrowPeak conservative idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF088OFP, ENCFF397EGL, ENCFF419RSJ, ENCFF972XCP 24574 ENCODE Processing Pipeline 6278c79a2422c26e83b5a067ed385659 https://www.encodeproject.org/files/ENCFF984RVM/@@download/ENCFF984RVM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF980DUY bigBed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF972XCP 11337424 ENCODE Processing Pipeline ad6e9d26ce6b4f0cc7b3068b9af72f80 https://www.encodeproject.org/files/ENCFF980DUY/@@download/ENCFF980DUY.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF084DKB bigBed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF088OFP 11356054 ENCODE Processing Pipeline 3ec52225b61d8ae82eae268f8e242da5 https://www.encodeproject.org/files/ENCFF084DKB/@@download/ENCFF084DKB.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF357WXG bigBed narrowPeak optimal idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF913PSL 133165 ENCODE Processing Pipeline 265c50e5b428f9cca1031f2eb91b1f37 https://www.encodeproject.org/files/ENCFF357WXG/@@download/ENCFF357WXG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF985JJT bigBed narrowPeak conservative idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF984RVM 81569 ENCODE Processing Pipeline 3705865183b41ef6649f00701f2ef046 https://www.encodeproject.org/files/ENCFF985JJT/@@download/ENCFF985JJT.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF913PSL bed narrowPeak optimal idr thresholded peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF088OFP, ENCFF397EGL, ENCFF419RSJ, ENCFF972XCP 47901 ENCODE Processing Pipeline e48e4240f945bb7cc791783326d66e4f https://www.encodeproject.org/files/ENCFF913PSL/@@download/ENCFF913PSL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF899KBZ bam unfiltered alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOR, ENCFF002EIJ, ENCFF807MUK 7450092621 ENCODE Processing Pipeline 6460b005995d6352c6e9e3d49cd459bd https://www.encodeproject.org/files/ENCFF899KBZ/@@download/ENCFF899KBZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF125QRO bam unfiltered alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOV, ENCFF002DTY, ENCFF807MUK 5853999422 ENCODE Processing Pipeline cdee48436a3e33b19cf7117c5d298bd3 https://www.encodeproject.org/files/ENCFF125QRO/@@download/ENCFF125QRO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF002DOR fastq reads ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EIJ 3629889537 Michael Snyder, Stanford f5c98fd8e4644c34c51cf4090f80c6e4 SRA:SRR6214161 https://www.encodeproject.org/files/ENCFF002DOR/@@download/ENCFF002DOR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, moderate library complexity ENCFF002DOV fastq reads ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002DTY 2920279044 Michael Snyder, Stanford 0defe4bbf81ac4bfd2efae001a3bbf53 SRA:SRR6214162 https://www.encodeproject.org/files/ENCFF002DOV/@@download/ENCFF002DOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, moderate library complexity ENCFF002DTY fastq reads ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DOV 2766580075 Michael Snyder, Stanford daeb3fdfc83b36e02908aff32bd24ea5 SRA:SRR6214162 https://www.encodeproject.org/files/ENCFF002DTY/@@download/ENCFF002DTY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, moderate library complexity ENCFF002EIJ fastq reads ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DOR 3611886500 Michael Snyder, Stanford ca80a6f0d6c109c6fe085962fa7f2f5b SRA:SRR6214161 https://www.encodeproject.org/files/ENCFF002EIJ/@@download/ENCFF002EIJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, moderate library complexity ENCFF796HOG bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOR, ENCFF002EIJ, ENCFF807MUK 5737596169 ENCODE Processing Pipeline 231e80e7db419207a15df492e565caae https://www.encodeproject.org/files/ENCFF796HOG/@@download/ENCFF796HOG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF838YGO bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOV, ENCFF002DTY, ENCFF807MUK 3973743130 ENCODE Processing Pipeline 0915bd4befaccde6935d0184f603492e https://www.encodeproject.org/files/ENCFF838YGO/@@download/ENCFF838YGO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF548VBP bigWig signal p-value ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF838YGO 942865231 ENCODE Processing Pipeline 27ba48f640e42271fbcceaeeb99ccac1 https://www.encodeproject.org/files/ENCFF548VBP/@@download/ENCFF548VBP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF724PTF bigWig signal p-value ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF796HOG, ENCFF838YGO 2066239123 ENCODE Processing Pipeline 60e40e1ebefc134d21b6f199ffd707d4 https://www.encodeproject.org/files/ENCFF724PTF/@@download/ENCFF724PTF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF249KVC bigWig fold change over control ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF796HOG, ENCFF838YGO 2218949274 ENCODE Processing Pipeline aa3681cc3af59e0f9ada5951479ac8aa https://www.encodeproject.org/files/ENCFF249KVC/@@download/ENCFF249KVC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF256JHY bigWig fold change over control ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF838YGO 1112858414 ENCODE Processing Pipeline 65bd77719065a7057ee27eb7ce293017 https://www.encodeproject.org/files/ENCFF256JHY/@@download/ENCFF256JHY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF466NTV bam unfiltered alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOR, ENCFF002EIJ, ENCFF643CGH 7453843475 ENCODE Processing Pipeline 75b3af05338d0aa92790a2442c03cc96 https://www.encodeproject.org/files/ENCFF466NTV/@@download/ENCFF466NTV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF619XNM bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOV, ENCFF002DTY, ENCFF643CGH 3972160132 ENCODE Processing Pipeline d5d8f49e3683195867c3fd38d60bc07d https://www.encodeproject.org/files/ENCFF619XNM/@@download/ENCFF619XNM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF980GTC bam unfiltered alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOV, ENCFF002DTY, ENCFF643CGH 5856639870 ENCODE Processing Pipeline 3beca96178b547ab61f30905eb465614 https://www.encodeproject.org/files/ENCFF980GTC/@@download/ENCFF980GTC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF518PQY bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOR, ENCFF002EIJ, ENCFF643CGH 5737080259 ENCODE Processing Pipeline 7912f4b31e53c5db0a279c12775f2c0c https://www.encodeproject.org/files/ENCFF518PQY/@@download/ENCFF518PQY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF213EZL bigWig signal p-value ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF518PQY, ENCFF910IKB 1376817191 ENCODE Processing Pipeline 73d96ad07c59a3afb769314d038fbc22 https://www.encodeproject.org/files/ENCFF213EZL/@@download/ENCFF213EZL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF628ZMG bigWig signal p-value ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF619XNM 1110882269 ENCODE Processing Pipeline af9a9b033c2cdfa7b682e7d9505b187f https://www.encodeproject.org/files/ENCFF628ZMG/@@download/ENCFF628ZMG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF074QZE bigWig signal p-value ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF518PQY, ENCFF619XNM, ENCFF910IKB 1927175546 ENCODE Processing Pipeline 651072abdae84618b00ccd591ede7238 https://www.encodeproject.org/files/ENCFF074QZE/@@download/ENCFF074QZE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF618ETX bigWig fold change over control ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF518PQY, ENCFF910IKB 1460737035 ENCODE Processing Pipeline 6a4b466c62fdada73b6357ea5061a47f https://www.encodeproject.org/files/ENCFF618ETX/@@download/ENCFF618ETX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF485VZV bigWig fold change over control ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF619XNM 1109936948 ENCODE Processing Pipeline 26fd6c6c3b58fdb8ad2d6198a1cd0a20 https://www.encodeproject.org/files/ENCFF485VZV/@@download/ENCFF485VZV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF204NFC bigWig fold change over control ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF518PQY, ENCFF619XNM, ENCFF910IKB 2221154097 ENCODE Processing Pipeline 756ada8bc462803fa1bfaeca52f99317 https://www.encodeproject.org/files/ENCFF204NFC/@@download/ENCFF204NFC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF053GQK bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF518PQY, ENCFF619XNM, ENCFF910IKB 7176048 ENCODE Processing Pipeline 67167dd55bd43d3b2f749aa62e309742 https://www.encodeproject.org/files/ENCFF053GQK/@@download/ENCFF053GQK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF250WMP bigBed narrowPeak conservative idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF953PPE 1202094 ENCODE Processing Pipeline 908ab643b9e9bd292698b66d69410a5f https://www.encodeproject.org/files/ENCFF250WMP/@@download/ENCFF250WMP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF371SJR bed narrowPeak optimal idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF053GQK, ENCFF419RSJ, ENCFF819OTE, ENCFF926YYG 830259 ENCODE Processing Pipeline 669cb3b083f3eac46781498cc9db168d https://www.encodeproject.org/files/ENCFF371SJR/@@download/ENCFF371SJR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF926YYG bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF619XNM 6922287 ENCODE Processing Pipeline d54df60eed5c5c0ffb6a368777a9d7c4 https://www.encodeproject.org/files/ENCFF926YYG/@@download/ENCFF926YYG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF452XYR bigBed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF053GQK 12912811 ENCODE Processing Pipeline b0bd8d7879ec1706539767fb025a0c02 https://www.encodeproject.org/files/ENCFF452XYR/@@download/ENCFF452XYR.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF171DNP bigBed narrowPeak optimal idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF371SJR 1465798 ENCODE Processing Pipeline 1f726c851302f95778d046fe1d1dfbcd https://www.encodeproject.org/files/ENCFF171DNP/@@download/ENCFF171DNP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF770JHU bigBed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF819OTE 12879029 ENCODE Processing Pipeline 410fbd91e361fd6649e38dc59acb2ffe https://www.encodeproject.org/files/ENCFF770JHU/@@download/ENCFF770JHU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF782UPJ bigBed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF926YYG 13225020 ENCODE Processing Pipeline 52090dc6c18a2a833cfbaaad40414fbe https://www.encodeproject.org/files/ENCFF782UPJ/@@download/ENCFF782UPJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF819OTE bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF518PQY, ENCFF910IKB 7056194 ENCODE Processing Pipeline 49c9a728e1764e56117ef606bba8b81b https://www.encodeproject.org/files/ENCFF819OTE/@@download/ENCFF819OTE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF953PPE bed narrowPeak conservative idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF053GQK, ENCFF419RSJ, ENCFF819OTE, ENCFF926YYG 647883 ENCODE Processing Pipeline 725e0a2fc32ff6a1a6a460b160cb118b https://www.encodeproject.org/files/ENCFF953PPE/@@download/ENCFF953PPE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF389ZHS bigWig fold change over control ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF796HOG 1449560118 ENCODE Processing Pipeline e6eff121a80032ff7ea75a226c0d30b1 https://www.encodeproject.org/files/ENCFF389ZHS/@@download/ENCFF389ZHS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF709ZFZ bigWig signal p-value ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF796HOG 1464434180 ENCODE Processing Pipeline 570515b98121e7923d339f1a0d500cfb https://www.encodeproject.org/files/ENCFF709ZFZ/@@download/ENCFF709ZFZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF611BUY bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF796HOG 7178552 ENCODE Processing Pipeline 0318f8b1097e2c3bce0291956fb04434 https://www.encodeproject.org/files/ENCFF611BUY/@@download/ENCFF611BUY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF606UFV bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF838YGO 6919933 ENCODE Processing Pipeline a4987ffd1ba8dadf8170584cd35048f4 https://www.encodeproject.org/files/ENCFF606UFV/@@download/ENCFF606UFV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF821WIF bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF796HOG, ENCFF838YGO 7254053 ENCODE Processing Pipeline c4a226a953fbb7ec3c9a7f9e462228bc https://www.encodeproject.org/files/ENCFF821WIF/@@download/ENCFF821WIF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF035WOP bigBed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF611BUY 13036122 ENCODE Processing Pipeline 18c39eb0783dd9c380ed575b1afe01ce https://www.encodeproject.org/files/ENCFF035WOP/@@download/ENCFF035WOP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF568YHF bigBed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF821WIF 12993422 ENCODE Processing Pipeline 6dc8e77cd4e9f47630366a43a0412235 https://www.encodeproject.org/files/ENCFF568YHF/@@download/ENCFF568YHF.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF446YXS bigBed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF606UFV 13206013 ENCODE Processing Pipeline b376927d2e7ffddb11ecadb93ac4c3fe https://www.encodeproject.org/files/ENCFF446YXS/@@download/ENCFF446YXS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF107YHW bigBed narrowPeak conservative idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF280UZU 1230707 ENCODE Processing Pipeline bc7e9a75c9bb0e902a8327b3f4b54dd1 https://www.encodeproject.org/files/ENCFF107YHW/@@download/ENCFF107YHW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF092KSN bigBed narrowPeak optimal idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF868QLL 1860903 ENCODE Processing Pipeline 5b600a4b652625d647d66e68972fabac https://www.encodeproject.org/files/ENCFF092KSN/@@download/ENCFF092KSN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF280UZU bed narrowPeak conservative idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF606UFV, ENCFF611BUY, ENCFF821WIF 668756 ENCODE Processing Pipeline 29a05ae846b9d5ee885fdff240d3b342 https://www.encodeproject.org/files/ENCFF280UZU/@@download/ENCFF280UZU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF868QLL bed narrowPeak optimal idr thresholded peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF606UFV, ENCFF611BUY, ENCFF821WIF 855049 ENCODE Processing Pipeline 96c0eed56cbef77b05a368374d122077 https://www.encodeproject.org/files/ENCFF868QLL/@@download/ENCFF868QLL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF645ZWB fastq reads ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 1 100 paired-ended 1 ENCFF981WLR 2691280027 Michael Snyder, Stanford d8cd74832f97f04a05635c2205883bec https://www.encodeproject.org/files/ENCFF645ZWB/@@download/ENCFF645ZWB.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF182MTO fastq reads ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 1 100 paired-ended 1 ENCFF949NMY 2543029571 Michael Snyder, Stanford 59f8c9a20dac6c6d666bb32ff2ffc3d2 https://www.encodeproject.org/files/ENCFF182MTO/@@download/ENCFF182MTO.fastq.gz Illumina HiSeq 4000 /files/ENCFF498JMO/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF949NMY fastq reads ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 1 100 paired-ended 2 ENCFF182MTO 2968698329 Michael Snyder, Stanford 48f52bfbb602d0cfddc60335b6e3ad81 https://www.encodeproject.org/files/ENCFF949NMY/@@download/ENCFF949NMY.fastq.gz Illumina HiSeq 4000 /files/ENCFF502GTS/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF981WLR fastq reads ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 1 100 paired-ended 2 ENCFF645ZWB 3107278693 Michael Snyder, Stanford 6a333358f668fa6dbfc688dff8e8fee9 https://www.encodeproject.org/files/ENCFF981WLR/@@download/ENCFF981WLR.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF464FKU bam unfiltered alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 100 ENCFF645ZWB, ENCFF807MUK, ENCFF981WLR 5452833770 ENCODE Processing Pipeline 5bac3e78a64ed0408b91f9cbdc248398 https://www.encodeproject.org/files/ENCFF464FKU/@@download/ENCFF464FKU.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF737ZPI bam unfiltered alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 100 ENCFF182MTO, ENCFF643CGH, ENCFF949NMY 5296226188 ENCODE Processing Pipeline f65f4eaec3c3e08d21f13c33f02d9ca7 https://www.encodeproject.org/files/ENCFF737ZPI/@@download/ENCFF737ZPI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF070LXT bam unfiltered alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 100 ENCFF643CGH, ENCFF645ZWB, ENCFF981WLR 5456107382 ENCODE Processing Pipeline a0438e43c6be2d24a4ecff7503b2b37d https://www.encodeproject.org/files/ENCFF070LXT/@@download/ENCFF070LXT.bam GRCh38 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF775NRI bam unfiltered alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 100 ENCFF182MTO, ENCFF807MUK, ENCFF949NMY 5292119725 ENCODE Processing Pipeline 2b7b65b0a13e019c3a22d56c06326a4b https://www.encodeproject.org/files/ENCFF775NRI/@@download/ENCFF775NRI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF545VWH bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 100 ENCFF643CGH, ENCFF645ZWB, ENCFF981WLR 4241609428 ENCODE Processing Pipeline f4ad96632c7da33b1cb4d1bedc304f15 https://www.encodeproject.org/files/ENCFF545VWH/@@download/ENCFF545VWH.bam GRCh38 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF528VXT bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 100 ENCFF182MTO, ENCFF807MUK, ENCFF949NMY 4147694795 ENCODE Processing Pipeline 4c6f735db482b3dd93d76883912b96d4 https://www.encodeproject.org/files/ENCFF528VXT/@@download/ENCFF528VXT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF863PZB bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 100 ENCFF182MTO, ENCFF643CGH, ENCFF949NMY 4149806588 ENCODE Processing Pipeline 011e170f30f95fb88050bc1178d9380d https://www.encodeproject.org/files/ENCFF863PZB/@@download/ENCFF863PZB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF645IUN bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 100 ENCFF645ZWB, ENCFF807MUK, ENCFF981WLR 4239610524 ENCODE Processing Pipeline 1a9f8f4e7feea3e51fa62773b8afe393 https://www.encodeproject.org/files/ENCFF645IUN/@@download/ENCFF645IUN.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF175FRR bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF645IUN, ENCFF834TUP 1441738690 ENCODE Processing Pipeline 605d5339854c28ca6ccc3345ac8aff36 https://www.encodeproject.org/files/ENCFF175FRR/@@download/ENCFF175FRR.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF186DSR bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF160VXC, ENCFF528VXT 1319380798 ENCODE Processing Pipeline 81a9efcdafdee6501828bdc78c969a70 https://www.encodeproject.org/files/ENCFF186DSR/@@download/ENCFF186DSR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF432GQX bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF160VXC, ENCFF528VXT 1387366855 ENCODE Processing Pipeline dacbc9779e87317472213389a7ef06f1 https://www.encodeproject.org/files/ENCFF432GQX/@@download/ENCFF432GQX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF464HGH bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF645IUN, ENCFF834TUP 1197283018 ENCODE Processing Pipeline 2e7a8bcc1b40280d0b792bae755ec953 https://www.encodeproject.org/files/ENCFF464HGH/@@download/ENCFF464HGH.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF588BMT bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF645IUN, ENCFF834TUP 6948885 ENCODE Processing Pipeline b5cafb3c8c8896bbb798add0a04cb77c https://www.encodeproject.org/files/ENCFF588BMT/@@download/ENCFF588BMT.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF981CYM bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF440OYN 11047103 ENCODE Processing Pipeline 6c08d2bbc428879889cc2c87d5f9b17d https://www.encodeproject.org/files/ENCFF981CYM/@@download/ENCFF981CYM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF282AHE bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF977RPN 12980865 ENCODE Processing Pipeline 05bca62930128e46b40b4e1b4bd4f61f https://www.encodeproject.org/files/ENCFF282AHE/@@download/ENCFF282AHE.bigBed GRCh38 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF766GRS bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF545VWH 1410039142 ENCODE Processing Pipeline 7828ab2ba98bab48aaad886077c4a87d https://www.encodeproject.org/files/ENCFF766GRS/@@download/ENCFF766GRS.bigWig GRCh38 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF041LFH bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF967XPK 11036082 ENCODE Processing Pipeline a6ec190889a210d7d380d2781dd3b7b2 https://www.encodeproject.org/files/ENCFF041LFH/@@download/ENCFF041LFH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF588PRG bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF588BMT 12972489 ENCODE Processing Pipeline 58f644e65a99ae9d997ff56041277efa https://www.encodeproject.org/files/ENCFF588PRG/@@download/ENCFF588PRG.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF342XBC bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF545VWH 1365520192 ENCODE Processing Pipeline d5b9e00b84ec332f5ed1f68567873042 https://www.encodeproject.org/files/ENCFF342XBC/@@download/ENCFF342XBC.bigWig GRCh38 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF977RPN bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF545VWH 6950595 ENCODE Processing Pipeline ca872ff5bc8753830bc3d8309e1c471d https://www.encodeproject.org/files/ENCFF977RPN/@@download/ENCFF977RPN.bed.gz GRCh38 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF481GDK bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF790TAN, ENCFF863PZB 1264587070 ENCODE Processing Pipeline 31e582e9c70bf2b0c186b7d31cd0f676 https://www.encodeproject.org/files/ENCFF481GDK/@@download/ENCFF481GDK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF440OYN bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF790TAN, ENCFF863PZB 6702851 ENCODE Processing Pipeline 735dc5a0662d124ddd4c8bc9230d012b https://www.encodeproject.org/files/ENCFF440OYN/@@download/ENCFF440OYN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF166CQM bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF790TAN, ENCFF863PZB 1395350376 ENCODE Processing Pipeline f8df9d8b7180af09f13b3f89122e9931 https://www.encodeproject.org/files/ENCFF166CQM/@@download/ENCFF166CQM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF871MFF fastq reads ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 1 101 paired-ended 1 ENCFF656SJN 2477844521 Michael Snyder, Stanford ad0b060b9e7802daf517e20ee6eb6b90 https://www.encodeproject.org/files/ENCFF871MFF/@@download/ENCFF871MFF.fastq.gz Illumina HiSeq 4000 /files/ENCFF259GQA/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF656SJN fastq reads ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 1 101 paired-ended 2 ENCFF871MFF 2672337679 Michael Snyder, Stanford 94d2e67d93d779b0c1a16a3b93124e16 https://www.encodeproject.org/files/ENCFF656SJN/@@download/ENCFF656SJN.fastq.gz Illumina HiSeq 4000 /files/ENCFF837MIV/ released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF209IOA bam unfiltered alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 101 ENCFF643CGH, ENCFF656SJN, ENCFF871MFF 4690111088 ENCODE Processing Pipeline 194aad6f1a92a0cb7a654946811ec053 https://www.encodeproject.org/files/ENCFF209IOA/@@download/ENCFF209IOA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF249JKL bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 101 ENCFF643CGH, ENCFF656SJN, ENCFF871MFF 3473675770 ENCODE Processing Pipeline ab43157536fbdcef88c17e8a49e2c530 https://www.encodeproject.org/files/ENCFF249JKL/@@download/ENCFF249JKL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF416IBC bam unfiltered alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 101 ENCFF656SJN, ENCFF807MUK, ENCFF871MFF 4685658564 ENCODE Processing Pipeline 5342f4962aa7a37d4566020311b873e6 https://www.encodeproject.org/files/ENCFF416IBC/@@download/ENCFF416IBC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF023ADT bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 101 ENCFF656SJN, ENCFF807MUK, ENCFF871MFF 3472279666 ENCODE Processing Pipeline f6a180acdbe4f0ee94d79b99c0b130c5 https://www.encodeproject.org/files/ENCFF023ADT/@@download/ENCFF023ADT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF316TMQ bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF249JKL, ENCFF712WXB, ENCFF790TAN, ENCFF863PZB 1903989249 ENCODE Processing Pipeline 2c8309a2ad6d6d76c15c06d211817ec5 https://www.encodeproject.org/files/ENCFF316TMQ/@@download/ENCFF316TMQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF455FXG bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF249JKL, ENCFF712WXB, ENCFF790TAN, ENCFF863PZB 7149590 ENCODE Processing Pipeline 8bcf07700d91dffd9219b17ab9bfde96 https://www.encodeproject.org/files/ENCFF455FXG/@@download/ENCFF455FXG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF368AAQ bed narrowPeak optimal idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF419RSJ, ENCFF440OYN, ENCFF455FXG, ENCFF714ILF 90535 ENCODE Processing Pipeline 03f379d7fd255fffe332f35e2c73795f https://www.encodeproject.org/files/ENCFF368AAQ/@@download/ENCFF368AAQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF120KHN bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF023ADT, ENCFF160VXC, ENCFF528VXT, ENCFF834TUP 2310499989 ENCODE Processing Pipeline 61cac14fab4b7fac3e0cc6d04a683f96 https://www.encodeproject.org/files/ENCFF120KHN/@@download/ENCFF120KHN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF424YPR bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF736TGQ 12954736 ENCODE Processing Pipeline aaedfd36c82a058854223e64bbc14d1e https://www.encodeproject.org/files/ENCFF424YPR/@@download/ENCFF424YPR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF545CPY bed narrowPeak conservative idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF001TDO, ENCFF632YKL, ENCFF736TGQ, ENCFF967XPK 30524 ENCODE Processing Pipeline 60b41b1f95dce150b724b6d208a31e63 https://www.encodeproject.org/files/ENCFF545CPY/@@download/ENCFF545CPY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF781JQK bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF249JKL, ENCFF712WXB 1346806480 ENCODE Processing Pipeline f47aa03f3ca3c866bfcd13dd0af0c220 https://www.encodeproject.org/files/ENCFF781JQK/@@download/ENCFF781JQK.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF791CMY bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF249JKL, ENCFF712WXB 1266270789 ENCODE Processing Pipeline 8bc33759ac6d8ddc943623ea509d6c14 https://www.encodeproject.org/files/ENCFF791CMY/@@download/ENCFF791CMY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF210NDG bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF249JKL, ENCFF712WXB, ENCFF790TAN, ENCFF863PZB 2309950476 ENCODE Processing Pipeline a0196bb4dcdfe26a0d725179b0fec1ea https://www.encodeproject.org/files/ENCFF210NDG/@@download/ENCFF210NDG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF714ILF bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF249JKL, ENCFF712WXB 6309025 ENCODE Processing Pipeline fed567c7a3da32158aa3f30dca163734 https://www.encodeproject.org/files/ENCFF714ILF/@@download/ENCFF714ILF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF578RXG bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF714ILF 11125100 ENCODE Processing Pipeline 928091934658429eec4dc5ce9f73048d https://www.encodeproject.org/files/ENCFF578RXG/@@download/ENCFF578RXG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF458ODL bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF455FXG 12966597 ENCODE Processing Pipeline 3bbb2731b5c003ccaab5584673f2586e https://www.encodeproject.org/files/ENCFF458ODL/@@download/ENCFF458ODL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF214GAI bed narrowPeak conservative idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF419RSJ, ENCFF440OYN, ENCFF455FXG, ENCFF714ILF 30802 ENCODE Processing Pipeline 8e7b73538a939eba6ce288529ef4576a https://www.encodeproject.org/files/ENCFF214GAI/@@download/ENCFF214GAI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF493GBS bigBed narrowPeak conservative idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF214GAI 121402 ENCODE Processing Pipeline dff07d68b550ac31729863f7c222bd40 https://www.encodeproject.org/files/ENCFF493GBS/@@download/ENCFF493GBS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF941ACK bigBed narrowPeak optimal idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF368AAQ 221177 ENCODE Processing Pipeline 134273fe9924f3c6e231f02e2418d86c https://www.encodeproject.org/files/ENCFF941ACK/@@download/ENCFF941ACK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF041RTV bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF023ADT, ENCFF834TUP 1104308860 ENCODE Processing Pipeline 185fcc1f57455105d2ebe8bb6d3ad71d https://www.encodeproject.org/files/ENCFF041RTV/@@download/ENCFF041RTV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF967XPK bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF160VXC, ENCFF528VXT 6699790 ENCODE Processing Pipeline 72163cc058f9eab1dd9b38183d499c79 https://www.encodeproject.org/files/ENCFF967XPK/@@download/ENCFF967XPK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF396EIY bigBed narrowPeak optimal idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF415YPX 219831 ENCODE Processing Pipeline cd0c2f7b16a58dcaf10feb194c66f56d https://www.encodeproject.org/files/ENCFF396EIY/@@download/ENCFF396EIY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF978LYT bigWig fold change over control ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF023ADT, ENCFF834TUP 1245335808 ENCODE Processing Pipeline 29860ddba3b0e58351e77dc06988e178 https://www.encodeproject.org/files/ENCFF978LYT/@@download/ENCFF978LYT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF736TGQ bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF023ADT, ENCFF160VXC, ENCFF528VXT, ENCFF834TUP 7145887 ENCODE Processing Pipeline 88355f2ff4342a2d6a710873b0d66cf3 https://www.encodeproject.org/files/ENCFF736TGQ/@@download/ENCFF736TGQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF110DIG bigBed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF632YKL 11113217 ENCODE Processing Pipeline f356ce12e669a4cb8870f9330dbd98ce https://www.encodeproject.org/files/ENCFF110DIG/@@download/ENCFF110DIG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF607JHW bigWig signal p-value ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF023ADT, ENCFF160VXC, ENCFF528VXT, ENCFF834TUP 2125364639 ENCODE Processing Pipeline 55e7ca355cceb58b7274d830dea89c82 https://www.encodeproject.org/files/ENCFF607JHW/@@download/ENCFF607JHW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF632YKL bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 ENCFF023ADT, ENCFF834TUP 6307917 ENCODE Processing Pipeline 7f8409e86ae780a6e98d2fce8a97f178 https://www.encodeproject.org/files/ENCFF632YKL/@@download/ENCFF632YKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF167LPU bigBed narrowPeak conservative idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF545CPY 119319 ENCODE Processing Pipeline 8aa8283869ff0a3838869b78b5e7f517 https://www.encodeproject.org/files/ENCFF167LPU/@@download/ENCFF167LPU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF415YPX bed narrowPeak optimal idr thresholded peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1, 4 ENCFF001TDO, ENCFF632YKL, ENCFF736TGQ, ENCFF967XPK 90857 ENCODE Processing Pipeline aefb4c3c8bd38bb09052056dc9ef8edd https://www.encodeproject.org/files/ENCFF415YPX/@@download/ENCFF415YPX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF079IZF fastq reads ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 1 40 single-ended 422824614 Xiang-Dong Fu, UCSD f4c256ca8cbfdbd508ff8ff8e67b5003 https://www.encodeproject.org/files/ENCFF079IZF/@@download/ENCFF079IZF.fastq.gz Illumina HiSeq 2500 /files/ENCFF577LLL/ released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF800WHJ fastq reads ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 1 40 single-ended 452112481 Xiang-Dong Fu, UCSD c58d3e9d97b570e80c812121d20b394c https://www.encodeproject.org/files/ENCFF800WHJ/@@download/ENCFF800WHJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF562ZMN fastq reads ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 1 40 single-ended 788771086 Xiang-Dong Fu, UCSD 6954c3e192e855a3a1abe0d4762511d8 https://www.encodeproject.org/files/ENCFF562ZMN/@@download/ENCFF562ZMN.fastq.gz Illumina HiSeq 2500 /files/ENCFF577LLL/ released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF752TPO fastq reads ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 1 40 single-ended 789116336 Xiang-Dong Fu, UCSD 7a2cb1f5159da4697e8af0aa98a4ca68 https://www.encodeproject.org/files/ENCFF752TPO/@@download/ENCFF752TPO.fastq.gz Illumina HiSeq 2500 /files/ENCFF363JFD/ released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF180WYS bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF752TPO, ENCFF800WHJ, ENCFF807MUK 607333013 ENCODE Processing Pipeline 97c7386fb6c8aea10907d8d8ac1e44dd https://www.encodeproject.org/files/ENCFF180WYS/@@download/ENCFF180WYS.bam hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF214QGI bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF079IZF, ENCFF562ZMN, ENCFF807MUK 666709848 ENCODE Processing Pipeline b937bc05097341abb01e5c83960e4464 https://www.encodeproject.org/files/ENCFF214QGI/@@download/ENCFF214QGI.bam hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF673CKZ bam unfiltered alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF752TPO, ENCFF800WHJ, ENCFF807MUK 1236889719 ENCODE Processing Pipeline 83eb72f1c096c1d5439a3a4d9c2d3ac2 https://www.encodeproject.org/files/ENCFF673CKZ/@@download/ENCFF673CKZ.bam hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF998LKC bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF643CGH, ENCFF752TPO, ENCFF800WHJ 606847527 ENCODE Processing Pipeline 1ccfb6f2d2eac849524b4ff43a409d8c https://www.encodeproject.org/files/ENCFF998LKC/@@download/ENCFF998LKC.bam GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF104JRH bam unfiltered alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF079IZF, ENCFF562ZMN, ENCFF643CGH 1246793869 ENCODE Processing Pipeline d0bec3cd6cb8c4fa2947ea97bd17c0d0 https://www.encodeproject.org/files/ENCFF104JRH/@@download/ENCFF104JRH.bam GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF609FFL bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF079IZF, ENCFF562ZMN, ENCFF643CGH 666187611 ENCODE Processing Pipeline c70b41ad628430b2c1c561a47a959829 https://www.encodeproject.org/files/ENCFF609FFL/@@download/ENCFF609FFL.bam GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF068IHC bam unfiltered alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF643CGH, ENCFF752TPO, ENCFF800WHJ 1242722710 ENCODE Processing Pipeline bb57651755b326b321e5424c2533f66a https://www.encodeproject.org/files/ENCFF068IHC/@@download/ENCFF068IHC.bam GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF479WQQ bam unfiltered alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF079IZF, ENCFF562ZMN, ENCFF807MUK 1240637391 ENCODE Processing Pipeline 39df0af1201a7725c205f6f9c54a9a41 https://www.encodeproject.org/files/ENCFF479WQQ/@@download/ENCFF479WQQ.bam hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF970GFH bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF906SAI, ENCFF998LKC 5819030 ENCODE Processing Pipeline b7a9f69287a325b8ae0b63b554502043 https://www.encodeproject.org/files/ENCFF970GFH/@@download/ENCFF970GFH.bed.gz GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF920XYR bigBed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF562TIU 13928708 ENCODE Processing Pipeline 0e6edad58731c4547165bbdac747ce19 https://www.encodeproject.org/files/ENCFF920XYR/@@download/ENCFF920XYR.bigBed GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF372LNZ bed narrowPeak conservative idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF562TIU, ENCFF786GFI, ENCFF970GFH 820705 ENCODE Processing Pipeline b5b23d014ed9a83d56960da02e9fb4e4 https://www.encodeproject.org/files/ENCFF372LNZ/@@download/ENCFF372LNZ.bed.gz GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF818ZFX bigWig signal p-value ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF120YSP, ENCFF609FFL, ENCFF906SAI, ENCFF998LKC 1322798448 ENCODE Processing Pipeline 3fefba192df83abeb6b90fc2016f2606 https://www.encodeproject.org/files/ENCFF818ZFX/@@download/ENCFF818ZFX.bigWig GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF031ANY bigBed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF786GFI 11370436 ENCODE Processing Pipeline 479ca04181aa721731ddd177443f67d8 https://www.encodeproject.org/files/ENCFF031ANY/@@download/ENCFF031ANY.bigBed GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF102XVH bed narrowPeak optimal idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF562TIU, ENCFF786GFI, ENCFF970GFH 840966 ENCODE Processing Pipeline 1763fe71aba2362d84740a7d4b259bf3 https://www.encodeproject.org/files/ENCFF102XVH/@@download/ENCFF102XVH.bed.gz GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF113JKF bigWig signal p-value ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF120YSP, ENCFF609FFL 703644125 ENCODE Processing Pipeline 209c02ffd65a32fbe46f81ab3944a4c1 https://www.encodeproject.org/files/ENCFF113JKF/@@download/ENCFF113JKF.bigWig GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF248CGR bigBed narrowPeak optimal idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF102XVH 1665737 ENCODE Processing Pipeline bc32cd7490b4f5a7aa52379d7418669d https://www.encodeproject.org/files/ENCFF248CGR/@@download/ENCFF248CGR.bigBed GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF492QXQ bigWig fold change over control ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF906SAI, ENCFF998LKC 499427535 ENCODE Processing Pipeline 7e9cfcdf154233b32a1f912b0afef287 https://www.encodeproject.org/files/ENCFF492QXQ/@@download/ENCFF492QXQ.bigWig GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF562TIU bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF120YSP, ENCFF609FFL, ENCFF906SAI, ENCFF998LKC 6788586 ENCODE Processing Pipeline 3a763387afa7efa121bf5c58ccf5806b https://www.encodeproject.org/files/ENCFF562TIU/@@download/ENCFF562TIU.bed.gz GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF586HOB bigWig fold change over control ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF120YSP, ENCFF609FFL 492934974 ENCODE Processing Pipeline 539741620c32641ea84bc6e4cc0ccdc3 https://www.encodeproject.org/files/ENCFF586HOB/@@download/ENCFF586HOB.bigWig GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF011DOM bigWig signal p-value ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF906SAI, ENCFF998LKC 738784343 ENCODE Processing Pipeline 869f74995bc0e1a65a699b6816ba240c https://www.encodeproject.org/files/ENCFF011DOM/@@download/ENCFF011DOM.bigWig GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF786GFI bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF120YSP, ENCFF609FFL 5693616 ENCODE Processing Pipeline 715038a5a944ed590040f3580caaa8d3 https://www.encodeproject.org/files/ENCFF786GFI/@@download/ENCFF786GFI.bed.gz GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF769FPU bigBed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF970GFH 11410316 ENCODE Processing Pipeline c21726180e5d1ff1b1d0440e375d3fc5 https://www.encodeproject.org/files/ENCFF769FPU/@@download/ENCFF769FPU.bigBed GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF788PVG bigBed narrowPeak conservative idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF372LNZ 1634336 ENCODE Processing Pipeline 4305f9ea8a862a2727e3c135ef9af585 https://www.encodeproject.org/files/ENCFF788PVG/@@download/ENCFF788PVG.bigBed GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF218VKE bigWig fold change over control ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF120YSP, ENCFF609FFL, ENCFF906SAI, ENCFF998LKC 1091896199 ENCODE Processing Pipeline 97181ce686f722d7be71cf0cdaf1b011 https://www.encodeproject.org/files/ENCFF218VKE/@@download/ENCFF218VKE.bigWig GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF077TWK bigBed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF681CMB 11401379 ENCODE Processing Pipeline c11c4be1f5bf66ba1cd6c3a4f039626d https://www.encodeproject.org/files/ENCFF077TWK/@@download/ENCFF077TWK.bigBed hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF765PXM bigBed narrowPeak conservative idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF966SQD 1643392 ENCODE Processing Pipeline d3986cf98d2eb17a8715ccafbf81697f https://www.encodeproject.org/files/ENCFF765PXM/@@download/ENCFF765PXM.bigBed hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF681CMB bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF180WYS, ENCFF641CEP 5819204 ENCODE Processing Pipeline 4ddb077d189adb2ff36f36687fabb5cf https://www.encodeproject.org/files/ENCFF681CMB/@@download/ENCFF681CMB.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF897BPO bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF214QGI, ENCFF493QSH 5697366 ENCODE Processing Pipeline d3bd0b546b414a6fbca8eefc9ff5495d https://www.encodeproject.org/files/ENCFF897BPO/@@download/ENCFF897BPO.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF680WBN bed narrowPeak optimal idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF001TDO, ENCFF199EYR, ENCFF681CMB, ENCFF897BPO 854155 ENCODE Processing Pipeline 722400e3eba7df91df323e11a2b0e897 https://www.encodeproject.org/files/ENCFF680WBN/@@download/ENCFF680WBN.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF933VEZ bigWig fold change over control ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF214QGI, ENCFF493QSH 495699199 ENCODE Processing Pipeline 903544dd07fbe36815e0c55c2e9eefa6 https://www.encodeproject.org/files/ENCFF933VEZ/@@download/ENCFF933VEZ.bigWig hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF248ZYN bigWig signal p-value ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF180WYS, ENCFF214QGI, ENCFF493QSH, ENCFF641CEP 1201612536 ENCODE Processing Pipeline 497232cf0ee8b0cc658aee9b4cc6eb43 https://www.encodeproject.org/files/ENCFF248ZYN/@@download/ENCFF248ZYN.bigWig hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF451ACZ bigWig fold change over control ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF180WYS, ENCFF641CEP 498656918 ENCODE Processing Pipeline 3fb28ef628bc77897d96f8993061f16f https://www.encodeproject.org/files/ENCFF451ACZ/@@download/ENCFF451ACZ.bigWig hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF055SDX bigBed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF199EYR 13947545 ENCODE Processing Pipeline f433c343bccb0b6281e0e10207eee980 https://www.encodeproject.org/files/ENCFF055SDX/@@download/ENCFF055SDX.bigBed hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF966SQD bed narrowPeak conservative idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF001TDO, ENCFF199EYR, ENCFF681CMB, ENCFF897BPO 826704 ENCODE Processing Pipeline 7c33b35f9a5092f739f991ca84843dde https://www.encodeproject.org/files/ENCFF966SQD/@@download/ENCFF966SQD.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF590KDQ bigWig signal p-value ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF180WYS, ENCFF641CEP 654024747 ENCODE Processing Pipeline be4ab4fd73d36c4284b2ad0410963905 https://www.encodeproject.org/files/ENCFF590KDQ/@@download/ENCFF590KDQ.bigWig hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF940QNN bigWig signal p-value ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF214QGI, ENCFF493QSH 665174305 ENCODE Processing Pipeline 3cb6f07990546dc898bd0415fb3c7513 https://www.encodeproject.org/files/ENCFF940QNN/@@download/ENCFF940QNN.bigWig hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF821RCB bigWig fold change over control ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF180WYS, ENCFF214QGI, ENCFF493QSH, ENCFF641CEP 1100067975 ENCODE Processing Pipeline 964c01eb8ae69159db99501ed078eeaf https://www.encodeproject.org/files/ENCFF821RCB/@@download/ENCFF821RCB.bigWig hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF199EYR bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF180WYS, ENCFF214QGI, ENCFF493QSH, ENCFF641CEP 6808347 ENCODE Processing Pipeline 615b7294fc8f64c118dd424d3340ffe0 https://www.encodeproject.org/files/ENCFF199EYR/@@download/ENCFF199EYR.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF258BLV bigBed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF897BPO 11368222 ENCODE Processing Pipeline 8192e866a60dd23481f168a6994409b7 https://www.encodeproject.org/files/ENCFF258BLV/@@download/ENCFF258BLV.bigBed hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF252IOK bigBed narrowPeak optimal idr thresholded peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF680WBN 1686409 ENCODE Processing Pipeline 9a838e4f9c7a4f2a168247fabe68c60b https://www.encodeproject.org/files/ENCFF252IOK/@@download/ENCFF252IOK.bigBed hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF306RZC fastq reads ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 1 40 single-ended 666167259 Xiang-Dong Fu, UCSD f349cd9b6d71501f0cb309282e9edcbc https://www.encodeproject.org/files/ENCFF306RZC/@@download/ENCFF306RZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF292SYX/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF769MBT fastq reads ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 1 40 single-ended 707197671 Xiang-Dong Fu, UCSD d91bde6016849c87b0f519fcbc8a80f3 https://www.encodeproject.org/files/ENCFF769MBT/@@download/ENCFF769MBT.fastq.gz Illumina HiSeq 2000 /files/ENCFF887XCD/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF293GKY fastq reads ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 1 40 single-ended 1019328398 Xiang-Dong Fu, UCSD e51fb807e39d8bdc4be9cbf38dcb7651 https://www.encodeproject.org/files/ENCFF293GKY/@@download/ENCFF293GKY.fastq.gz Illumina HiSeq 2500 /files/ENCFF292SYX/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF108VEJ fastq reads ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 1 40 single-ended 1699250297 Xiang-Dong Fu, UCSD 46d79cb502f463bc460e5340051dbfbc https://www.encodeproject.org/files/ENCFF108VEJ/@@download/ENCFF108VEJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF887XCD/ released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF181JAW bam unfiltered alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF293GKY, ENCFF306RZC, ENCFF643CGH 1616765092 ENCODE Processing Pipeline 69dfd59958fd8f0d7d59d1dab8e6599a https://www.encodeproject.org/files/ENCFF181JAW/@@download/ENCFF181JAW.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF728YOO bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF293GKY, ENCFF306RZC, ENCFF643CGH 548634010 ENCODE Processing Pipeline 6c895d99d1828a39da0d0bc1138e9ddc https://www.encodeproject.org/files/ENCFF728YOO/@@download/ENCFF728YOO.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF218HKO bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF293GKY, ENCFF306RZC, ENCFF807MUK 549407225 ENCODE Processing Pipeline 2ab4f4c3ccbc985a21ce85e1af2ccabb https://www.encodeproject.org/files/ENCFF218HKO/@@download/ENCFF218HKO.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF272TLP bam unfiltered alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF293GKY, ENCFF306RZC, ENCFF807MUK 1603927390 ENCODE Processing Pipeline fb85dab364dd29a6dc49c0774f272150 https://www.encodeproject.org/files/ENCFF272TLP/@@download/ENCFF272TLP.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF255FHE bam unfiltered alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF108VEJ, ENCFF643CGH, ENCFF769MBT 2340062421 ENCODE Processing Pipeline af96e3154543622dd7373cb14a4afa20 https://www.encodeproject.org/files/ENCFF255FHE/@@download/ENCFF255FHE.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF542MVV bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF108VEJ, ENCFF643CGH, ENCFF769MBT 516520870 ENCODE Processing Pipeline e9b69a1bdb95459535d54058379d2132 https://www.encodeproject.org/files/ENCFF542MVV/@@download/ENCFF542MVV.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF655VZE bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF108VEJ, ENCFF769MBT, ENCFF807MUK 517322460 ENCODE Processing Pipeline 022f9bc4b7af69715047acec75e634f0 https://www.encodeproject.org/files/ENCFF655VZE/@@download/ENCFF655VZE.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF868DFT bam unfiltered alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF108VEJ, ENCFF769MBT, ENCFF807MUK 2322907678 ENCODE Processing Pipeline f60d3ca49ffda14be42b93c33fcc1968 https://www.encodeproject.org/files/ENCFF868DFT/@@download/ENCFF868DFT.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF581JYC bigWig fold change over control ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF450GNQ, ENCFF728YOO, ENCFF901YVZ 436982560 ENCODE Processing Pipeline dc4c1b2bd415430aa6075096796c65a2 https://www.encodeproject.org/files/ENCFF581JYC/@@download/ENCFF581JYC.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF979CVF bigWig signal p-value ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF450GNQ, ENCFF542MVV, ENCFF728YOO, ENCFF901YVZ 915064850 ENCODE Processing Pipeline bb0d196f9d5ab63aa7999183391e80a7 https://www.encodeproject.org/files/ENCFF979CVF/@@download/ENCFF979CVF.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF189EKJ bigWig fold change over control ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF450GNQ, ENCFF542MVV, ENCFF901YVZ 468577993 ENCODE Processing Pipeline e8019928a993c2c41fc8ce640642dbe1 https://www.encodeproject.org/files/ENCFF189EKJ/@@download/ENCFF189EKJ.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF447JRJ bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF450GNQ, ENCFF728YOO, ENCFF901YVZ 5063766 ENCODE Processing Pipeline e6de25cddb5c44c38e0b9a3455f41401 https://www.encodeproject.org/files/ENCFF447JRJ/@@download/ENCFF447JRJ.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF535QFN bigWig fold change over control ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF450GNQ, ENCFF542MVV, ENCFF728YOO, ENCFF901YVZ 701118762 ENCODE Processing Pipeline 284368c5f5f5bf967171988135f3eacf https://www.encodeproject.org/files/ENCFF535QFN/@@download/ENCFF535QFN.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF908QCS bed narrowPeak optimal idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF447JRJ, ENCFF460EPI, ENCFF636WWO 71470 ENCODE Processing Pipeline 77871c78ff3c5f465f2fb21c61fe9138 https://www.encodeproject.org/files/ENCFF908QCS/@@download/ENCFF908QCS.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF117EFY bigWig signal p-value ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF450GNQ, ENCFF542MVV, ENCFF901YVZ 687689938 ENCODE Processing Pipeline 7f5408fddaeb2c0f40b794b4574a2de6 https://www.encodeproject.org/files/ENCFF117EFY/@@download/ENCFF117EFY.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF460EPI bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF450GNQ, ENCFF542MVV, ENCFF901YVZ 5041936 ENCODE Processing Pipeline 7b10b7d6a8029b51eb9be78ceb079123 https://www.encodeproject.org/files/ENCFF460EPI/@@download/ENCFF460EPI.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF636WWO bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF450GNQ, ENCFF542MVV, ENCFF728YOO, ENCFF901YVZ 6184265 ENCODE Processing Pipeline 977dcf0061c135a53db96c249f290b50 https://www.encodeproject.org/files/ENCFF636WWO/@@download/ENCFF636WWO.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF277OCN bigBed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF447JRJ 10945834 ENCODE Processing Pipeline b3495c1200b810dc526e4d362150b7fe https://www.encodeproject.org/files/ENCFF277OCN/@@download/ENCFF277OCN.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF509SNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF308QFT 184214 ENCODE Processing Pipeline efc2287cd5b0581ed0fdb17317a8d5c3 https://www.encodeproject.org/files/ENCFF509SNQ/@@download/ENCFF509SNQ.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF431ZRN bigBed narrowPeak optimal idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF908QCS 188961 ENCODE Processing Pipeline c1c6db6bfc536a69cdd904fbaeffa3a8 https://www.encodeproject.org/files/ENCFF431ZRN/@@download/ENCFF431ZRN.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF254TJR bigBed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF460EPI 10873663 ENCODE Processing Pipeline 7067dcba854e2d65035da072a44920b6 https://www.encodeproject.org/files/ENCFF254TJR/@@download/ENCFF254TJR.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF199LCL bigBed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF636WWO 13300490 ENCODE Processing Pipeline 788df727c230172621a94b5e8aea3f2e https://www.encodeproject.org/files/ENCFF199LCL/@@download/ENCFF199LCL.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF308QFT bed narrowPeak conservative idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF419RSJ, ENCFF447JRJ, ENCFF460EPI, ENCFF636WWO 68452 ENCODE Processing Pipeline 54aed9c5eb44c7649ddaaa024e8a4ed6 https://www.encodeproject.org/files/ENCFF308QFT/@@download/ENCFF308QFT.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF334YZU bigWig signal p-value ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF450GNQ, ENCFF728YOO, ENCFF901YVZ 686570744 ENCODE Processing Pipeline 3e496f95692b2d7bbe8e6e6558d2674e https://www.encodeproject.org/files/ENCFF334YZU/@@download/ENCFF334YZU.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF325LSO bigWig signal p-value ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 715059469 ENCODE Processing Pipeline f758c8ec978f1dac5bf01af8c7a945ad https://www.encodeproject.org/files/ENCFF325LSO/@@download/ENCFF325LSO.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF239MYP bigWig signal p-value ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO 650232685 ENCODE Processing Pipeline 563a3f5bf3c98e0e21110580f2a6b44e https://www.encodeproject.org/files/ENCFF239MYP/@@download/ENCFF239MYP.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF575PHF bigWig fold change over control ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO 439327581 ENCODE Processing Pipeline a49880e739c8509bb96406a92b4221a8 https://www.encodeproject.org/files/ENCFF575PHF/@@download/ENCFF575PHF.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF765SIL bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 6262628 ENCODE Processing Pipeline 8e40027156279e9bbba506db1f82acbb https://www.encodeproject.org/files/ENCFF765SIL/@@download/ENCFF765SIL.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF375RAU bigBed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF142SFP 10902958 ENCODE Processing Pipeline f8348abb6e30929b90dc1fefec51349a https://www.encodeproject.org/files/ENCFF375RAU/@@download/ENCFF375RAU.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF898ZCW bigWig signal p-value ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 783954665 ENCODE Processing Pipeline 17b7bad2d667f7d1ca50b69e3ce3f61d https://www.encodeproject.org/files/ENCFF898ZCW/@@download/ENCFF898ZCW.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF947PCM bigWig fold change over control ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 463300552 ENCODE Processing Pipeline f84c03fd6399c7f60aba8211aadc67c6 https://www.encodeproject.org/files/ENCFF947PCM/@@download/ENCFF947PCM.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF059CKF bigWig fold change over control ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 703724735 ENCODE Processing Pipeline ceb6f35856d99828de10cb3902b9585c https://www.encodeproject.org/files/ENCFF059CKF/@@download/ENCFF059CKF.bigWig hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF912PLZ bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO 5062563 ENCODE Processing Pipeline 28ec378a0da4bb98250d36f315999068 https://www.encodeproject.org/files/ENCFF912PLZ/@@download/ENCFF912PLZ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF142SFP bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 5191516 ENCODE Processing Pipeline b5034833863a6e906f673011c9c25685 https://www.encodeproject.org/files/ENCFF142SFP/@@download/ENCFF142SFP.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF780LTM bigBed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF912PLZ 10939321 ENCODE Processing Pipeline ed1b5bde8373afec67e56e0d2baa87af https://www.encodeproject.org/files/ENCFF780LTM/@@download/ENCFF780LTM.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF847EQN bigBed narrowPeak conservative idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF385HAD 183580 ENCODE Processing Pipeline 5c2059094e3f5f23e7e9d593068d490e https://www.encodeproject.org/files/ENCFF847EQN/@@download/ENCFF847EQN.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF501NHW bed narrowPeak optimal idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF142SFP, ENCFF765SIL, ENCFF912PLZ 72460 ENCODE Processing Pipeline 64bdeef3adca7bd100420e733dd6871b https://www.encodeproject.org/files/ENCFF501NHW/@@download/ENCFF501NHW.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF540SFH bigBed narrowPeak optimal idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF501NHW 189617 ENCODE Processing Pipeline 30653ced57630385030b9762660ad1b8 https://www.encodeproject.org/files/ENCFF540SFH/@@download/ENCFF540SFH.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF245ERJ bigBed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF765SIL 13287809 ENCODE Processing Pipeline 15d3e03685f6e540501a609b929374da https://www.encodeproject.org/files/ENCFF245ERJ/@@download/ENCFF245ERJ.bigBed hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF385HAD bed narrowPeak conservative idr thresholded peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF001TDO, ENCFF142SFP, ENCFF765SIL, ENCFF912PLZ 68809 ENCODE Processing Pipeline 976a8e100ae7970ea0927c109cd63785 https://www.encodeproject.org/files/ENCFF385HAD/@@download/ENCFF385HAD.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF001GWX bigBed broadPeak hotspots ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XLX 3027344 John Stamatoyannopoulos, UW d288ea2bb484d87e0bed0b8502ab6ab4 https://www.encodeproject.org/files/ENCFF001GWX/@@download/ENCFF001GWX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GWY bigBed broadPeak hotspots ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XLY 2825081 John Stamatoyannopoulos, UW d2a6d5fbf9e313465362dc29403e300e https://www.encodeproject.org/files/ENCFF001GWY/@@download/ENCFF001GWY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GWZ bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXJ 536444754 John Stamatoyannopoulos, UW cf3c0e7ed2070f3669ac454658613f6f https://www.encodeproject.org/files/ENCFF001GWZ/@@download/ENCFF001GWZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXA bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XLZ 1052872 John Stamatoyannopoulos, UW d32b8f95a633b255ee3323cd39e13f97 https://www.encodeproject.org/files/ENCFF001GXA/@@download/ENCFF001GXA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXB bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMA 815841 John Stamatoyannopoulos, UW 88299c169071cd988aa0381f41aac6a6 https://www.encodeproject.org/files/ENCFF001GXB/@@download/ENCFF001GXB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXC bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXI 414824884 John Stamatoyannopoulos, UW a505fd8b3cf974bfca7f491b58f723cb https://www.encodeproject.org/files/ENCFF001GXC/@@download/ENCFF001GXC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXD bigWig raw signal ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWZ 120750492 John Stamatoyannopoulos, UW 0895d9c0f13646ee75d522ef6f1e6989 https://www.encodeproject.org/files/ENCFF001GXD/@@download/ENCFF001GXD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXF bigWig raw signal ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXC 111994378 John Stamatoyannopoulos, UW 2c6439d0c6057d81c774bf17ea62f777 https://www.encodeproject.org/files/ENCFF001GXF/@@download/ENCFF001GXF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXI fastq reads ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 451767298 John Stamatoyannopoulos, UW 75958214e09f77f2001255b830274c85 https://www.encodeproject.org/files/ENCFF001GXI/@@download/ENCFF001GXI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001GXJ fastq reads ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 599432024 John Stamatoyannopoulos, UW f946d7d2ca0420d2c47073989e990276 https://www.encodeproject.org/files/ENCFF001GXJ/@@download/ENCFF001GXJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001XLX bed broadPeak hotspots ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWZ 2121279 John Stamatoyannopoulos, UW 9e2c908eb82d6b7bb24bec41bee64c9e https://www.encodeproject.org/files/ENCFF001XLX/@@download/ENCFF001XLX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001XLY bed broadPeak hotspots ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXC 1840426 John Stamatoyannopoulos, UW 3a99cbe9d21bf40f1b44ec75a1758669 https://www.encodeproject.org/files/ENCFF001XLY/@@download/ENCFF001XLY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001XLZ bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWZ 745367 John Stamatoyannopoulos, UW 581431e9ce2e232b2f1d85641d31ed78 https://www.encodeproject.org/files/ENCFF001XLZ/@@download/ENCFF001XLZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF001XMA bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXC 547223 John Stamatoyannopoulos, UW 73909ab110e808d51fc2e7c5ac0716f5 https://www.encodeproject.org/files/ENCFF001XMA/@@download/ENCFF001XMA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF002DBX bed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GWZ, ENCFF001GXC 909696 ENCODE Consortium Analysis Working Group e4c9ca3fd0bbe016c349e411ec6c52e3 https://www.encodeproject.org/files/ENCFF002DBX/@@download/ENCFF002DBX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF012QUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DBX 1817277 ENCODE Consortium 39ff30de9032877869b6e0237e4c4acd https://www.encodeproject.org/files/ENCFF012QUQ/@@download/ENCFF012QUQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF420WDH bam unfiltered alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXI, ENCFF643CGH 540208736 ENCODE Processing Pipeline 49ee1c66a1479450f0eba8ecb7115cb7 https://www.encodeproject.org/files/ENCFF420WDH/@@download/ENCFF420WDH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF088ESD bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXI, ENCFF643CGH 370476317 ENCODE Processing Pipeline 76fe15607428d99bba9695227a3e455b https://www.encodeproject.org/files/ENCFF088ESD/@@download/ENCFF088ESD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF135FSJ bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXJ, ENCFF643CGH 454791886 ENCODE Processing Pipeline 53d6d8292af3edd95b59f7cb667cfa22 https://www.encodeproject.org/files/ENCFF135FSJ/@@download/ENCFF135FSJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF156OKM bam unfiltered alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXJ, ENCFF643CGH 684472609 ENCODE Processing Pipeline b5b368e04c65111d61866c0bcf2f86f8 https://www.encodeproject.org/files/ENCFF156OKM/@@download/ENCFF156OKM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF549TYB bam unfiltered alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXI, ENCFF807MUK 538052552 ENCODE Processing Pipeline 337c5411b1484f99a0edd718e431a496 https://www.encodeproject.org/files/ENCFF549TYB/@@download/ENCFF549TYB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF217RCW bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXI, ENCFF807MUK 370623871 ENCODE Processing Pipeline 891a0c483edbd41e16d81a2c986f2ceb https://www.encodeproject.org/files/ENCFF217RCW/@@download/ENCFF217RCW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF004OMB bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXJ, ENCFF807MUK 454961588 ENCODE Processing Pipeline 9267613d3e949981ea290686dc91060c https://www.encodeproject.org/files/ENCFF004OMB/@@download/ENCFF004OMB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF907CVH bam unfiltered alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXJ, ENCFF807MUK 682025638 ENCODE Processing Pipeline a5dc8966372ba87ce104cd6504a2249f https://www.encodeproject.org/files/ENCFF907CVH/@@download/ENCFF907CVH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF059SZP bigWig signal p-value ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF088ESD 170263657 ENCODE Processing Pipeline 051cda3ddcf946ce4bf800a058482df3 https://www.encodeproject.org/files/ENCFF059SZP/@@download/ENCFF059SZP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF686APM bigWig signal p-value ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135FSJ 181703356 ENCODE Processing Pipeline b4d7eb0ab85ba89e95d27846338a18bf https://www.encodeproject.org/files/ENCFF686APM/@@download/ENCFF686APM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF613ZEW bigWig signal p-value ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF088ESD, ENCFF135FSJ 174278538 ENCODE Processing Pipeline a19bac34e2326dcb42c7cced84681509 https://www.encodeproject.org/files/ENCFF613ZEW/@@download/ENCFF613ZEW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF310ADC bigWig fold change over control ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135FSJ 167155419 ENCODE Processing Pipeline d7c0dd61430a1af668815ac1733c7edf https://www.encodeproject.org/files/ENCFF310ADC/@@download/ENCFF310ADC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF112CJQ bigWig fold change over control ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF088ESD 131231424 ENCODE Processing Pipeline 2d05e785b3cdb58106a3b57c4cb887f1 https://www.encodeproject.org/files/ENCFF112CJQ/@@download/ENCFF112CJQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF267MON bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF135FSJ 3899867 ENCODE Processing Pipeline 3591ffa967736eb6726148c83edf3f90 https://www.encodeproject.org/files/ENCFF267MON/@@download/ENCFF267MON.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF640EZJ bigWig fold change over control ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF088ESD, ENCFF135FSJ 275531546 ENCODE Processing Pipeline 6551273b370e2aad367919bd8ffa5856 https://www.encodeproject.org/files/ENCFF640EZJ/@@download/ENCFF640EZJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF623IIJ bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF088ESD, ENCFF135FSJ 4037916 ENCODE Processing Pipeline 89f789e01c6e347c5e8c2636ea649f6d https://www.encodeproject.org/files/ENCFF623IIJ/@@download/ENCFF623IIJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF127JNI bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF117SCL 5106981 ENCODE Processing Pipeline 2b4604bb324ebcbf5693139e2eb0a5b4 https://www.encodeproject.org/files/ENCFF127JNI/@@download/ENCFF127JNI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF997BLN bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF623IIJ 8057667 ENCODE Processing Pipeline 39cba4719002d61489d3922a43cd1594 https://www.encodeproject.org/files/ENCFF997BLN/@@download/ENCFF997BLN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF117SCL bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF088ESD 2496352 ENCODE Processing Pipeline 1e536ef4b2f279aee9991dc2c3cc3673 https://www.encodeproject.org/files/ENCFF117SCL/@@download/ENCFF117SCL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF838FAU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF826NCK 1223802 ENCODE Processing Pipeline d61c687572be03e3ef300cf203a57170 https://www.encodeproject.org/files/ENCFF838FAU/@@download/ENCFF838FAU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF834ABX bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF267MON 7747604 ENCODE Processing Pipeline cabe076a2a904329c1704b1df32981a9 https://www.encodeproject.org/files/ENCFF834ABX/@@download/ENCFF834ABX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF419OQC bed narrowPeak conservative idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF117SCL, ENCFF267MON, ENCFF419RSJ, ENCFF623IIJ 643736 ENCODE Processing Pipeline a7a9469194f334dcc196ed7df8d7af11 https://www.encodeproject.org/files/ENCFF419OQC/@@download/ENCFF419OQC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF398SXP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419OQC 1141686 ENCODE Processing Pipeline edce43342e64b126723c3e601dd5eb2b https://www.encodeproject.org/files/ENCFF398SXP/@@download/ENCFF398SXP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF826NCK bed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF117SCL, ENCFF267MON, ENCFF419RSJ, ENCFF623IIJ 703156 ENCODE Processing Pipeline cef9f8b0e050e518e0b30363df080d46 https://www.encodeproject.org/files/ENCFF826NCK/@@download/ENCFF826NCK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF326MDJ bigWig signal p-value ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF004OMB, ENCFF137BYR 181783235 ENCODE Processing Pipeline 9650b8f4922b524774b885d06d3cb746 https://www.encodeproject.org/files/ENCFF326MDJ/@@download/ENCFF326MDJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF665AVF bigWig fold change over control ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF004OMB, ENCFF137BYR 169492913 ENCODE Processing Pipeline da65ede13104c5b716854c9e0c5798d3 https://www.encodeproject.org/files/ENCFF665AVF/@@download/ENCFF665AVF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF003KLH bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF299COL 7792324 ENCODE Processing Pipeline 73f268f395e6d991edbae108612ece35 https://www.encodeproject.org/files/ENCFF003KLH/@@download/ENCFF003KLH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF238OYJ bigWig signal p-value ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF137BYR, ENCFF217RCW 170986247 ENCODE Processing Pipeline 391aa95c19d03a66afe6e635701fad1c https://www.encodeproject.org/files/ENCFF238OYJ/@@download/ENCFF238OYJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF651OJH bigWig signal p-value ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF004OMB, ENCFF137BYR, ENCFF217RCW 174424798 ENCODE Processing Pipeline f002ee46c441d15407e11f085eec45f3 https://www.encodeproject.org/files/ENCFF651OJH/@@download/ENCFF651OJH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF397OHB bigWig fold change over control ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF137BYR, ENCFF217RCW 133419593 ENCODE Processing Pipeline 1f9e212a5b19855e832d7279d132ce05 https://www.encodeproject.org/files/ENCFF397OHB/@@download/ENCFF397OHB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF042OUP bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF004OMB, ENCFF137BYR, ENCFF217RCW 4061584 ENCODE Processing Pipeline dddc9336ee970a464c0795654ce246bd https://www.encodeproject.org/files/ENCFF042OUP/@@download/ENCFF042OUP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF179XTO bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF042OUP 8084180 ENCODE Processing Pipeline f470a859473f2c7bfbeddd497f92e6ce https://www.encodeproject.org/files/ENCFF179XTO/@@download/ENCFF179XTO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF115HBS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF405DVU 1152617 ENCODE Processing Pipeline 97ffe977911aa15ee6950995733935cf https://www.encodeproject.org/files/ENCFF115HBS/@@download/ENCFF115HBS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF187EXG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF622DUX 1238805 ENCODE Processing Pipeline 0f518c9ba4dcb8756b2b473b7093c96d https://www.encodeproject.org/files/ENCFF187EXG/@@download/ENCFF187EXG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF380POX bigWig fold change over control ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF004OMB, ENCFF137BYR, ENCFF217RCW 275700984 ENCODE Processing Pipeline 3cd42583184359ea4e4dc8243deb8772 https://www.encodeproject.org/files/ENCFF380POX/@@download/ENCFF380POX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF437UAR bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF137BYR, ENCFF217RCW 2527386 ENCODE Processing Pipeline fedd7582605f939e4bdfb8920ec183b7 https://www.encodeproject.org/files/ENCFF437UAR/@@download/ENCFF437UAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF299COL bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF004OMB, ENCFF137BYR 3925324 ENCODE Processing Pipeline be75fd99a795d1e80cff9e274c320e41 https://www.encodeproject.org/files/ENCFF299COL/@@download/ENCFF299COL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF405DVU bed narrowPeak conservative idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF042OUP, ENCFF299COL, ENCFF437UAR 649637 ENCODE Processing Pipeline 211f9f25eba6d61dd6b98626b4e7faf7 https://www.encodeproject.org/files/ENCFF405DVU/@@download/ENCFF405DVU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF622DUX bed narrowPeak optimal idr thresholded peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF042OUP, ENCFF299COL, ENCFF437UAR 711204 ENCODE Processing Pipeline 0d3d0dc20ceb418bf2381474049dad66 https://www.encodeproject.org/files/ENCFF622DUX/@@download/ENCFF622DUX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF296KIG bigBed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF437UAR 5166282 ENCODE Processing Pipeline b26abbcc494311d5d5a0dbbc63bedf4b https://www.encodeproject.org/files/ENCFF296KIG/@@download/ENCFF296KIG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF345KQX fastq reads ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 1 36 single-ended 1216995535 Bradley Bernstein, Broad d366edca24222ada97043561d9fe723f https://www.encodeproject.org/files/ENCFF345KQX/@@download/ENCFF345KQX.fastq.gz Illumina HiSeq 2000 /files/ENCFF413RQG/ released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF508FCI fastq reads ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 1 76 paired-ended 1 ENCFF992LSY 1825849869 Bradley Bernstein, Broad d8e421360d6606edd92f1e95f056e89c https://www.encodeproject.org/files/ENCFF508FCI/@@download/ENCFF508FCI.fastq.gz Illumina HiSeq 2500 /files/ENCFF048ZOQ/, /files/ENCFF796ERZ/, /files/ENCFF957PGR/ released low read length, mixed run types, antibody characterized with exemption, mixed read lengths, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF992LSY fastq reads ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 1 76 paired-ended 2 ENCFF508FCI 1783354773 Bradley Bernstein, Broad a0e6288ad457e63c8eaebaf80fe3efcf https://www.encodeproject.org/files/ENCFF992LSY/@@download/ENCFF992LSY.fastq.gz Illumina HiSeq 2500 /files/ENCFF048ZOQ/, /files/ENCFF827YXC/ released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF834HDU bam unfiltered alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF508FCI, ENCFF807MUK 1361677184 ENCODE Processing Pipeline 7ccc8acc2829382ba311e2e8479545ec https://www.encodeproject.org/files/ENCFF834HDU/@@download/ENCFF834HDU.bam hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF906RFX bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF508FCI, ENCFF643CGH 919156860 ENCODE Processing Pipeline 1deba0ae3c8a04e67ae7e2df207b87e0 https://www.encodeproject.org/files/ENCFF906RFX/@@download/ENCFF906RFX.bam GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF631ZBS bam unfiltered alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF508FCI, ENCFF643CGH 1368122182 ENCODE Processing Pipeline c793feb61c141356851f04802364e4e5 https://www.encodeproject.org/files/ENCFF631ZBS/@@download/ENCFF631ZBS.bam GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF730MQF bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF508FCI, ENCFF807MUK 919358687 ENCODE Processing Pipeline a3ac9e67a2e01c1806a24b59a28ac97e https://www.encodeproject.org/files/ENCFF730MQF/@@download/ENCFF730MQF.bam hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF208XKG bam unfiltered alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF345KQX, ENCFF643CGH 1577097178 ENCODE Processing Pipeline 1c43d850705109dbd397dbbf097ead84 https://www.encodeproject.org/files/ENCFF208XKG/@@download/ENCFF208XKG.bam GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF666QHO bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF345KQX, ENCFF643CGH 1052679291 ENCODE Processing Pipeline e5dc6c328ce61ffa9f412860f112ffd4 https://www.encodeproject.org/files/ENCFF666QHO/@@download/ENCFF666QHO.bam GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF275UIW bam unfiltered alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF345KQX, ENCFF807MUK 1568516403 ENCODE Processing Pipeline 08f18381c6dc6d611880107d1cb9f60c https://www.encodeproject.org/files/ENCFF275UIW/@@download/ENCFF275UIW.bam hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF467JND bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF345KQX, ENCFF807MUK 1052846717 ENCODE Processing Pipeline daf022eeaefeeef1407bc76ba4ee4dea https://www.encodeproject.org/files/ENCFF467JND/@@download/ENCFF467JND.bam hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF166JWH bigWig signal p-value ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF064LQH, ENCFF666QHO, ENCFF889VIV, ENCFF906RFX 1248884645 ENCODE Processing Pipeline 8f7836db87c898061eeb7d58271f1b87 https://www.encodeproject.org/files/ENCFF166JWH/@@download/ENCFF166JWH.bigWig GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF605WZP bigWig signal p-value ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND, ENCFF730MQF 1067841613 ENCODE Processing Pipeline f67dc87089ea6fb9bf532f0f05894265 https://www.encodeproject.org/files/ENCFF605WZP/@@download/ENCFF605WZP.bigWig hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF740VYK bigWig signal p-value ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF064LQH, ENCFF666QHO, ENCFF889VIV 906545587 ENCODE Processing Pipeline c658ccc389d84af22a1657828c345493 https://www.encodeproject.org/files/ENCFF740VYK/@@download/ENCFF740VYK.bigWig GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF590YJU bigWig signal p-value ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND 1069016785 ENCODE Processing Pipeline 283686a5ae6ff0c71adca949d3fab687 https://www.encodeproject.org/files/ENCFF590YJU/@@download/ENCFF590YJU.bigWig hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF838TNE bigWig signal p-value ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF064LQH, ENCFF889VIV, ENCFF906RFX 944558893 ENCODE Processing Pipeline 034a20a0fb93a7e984dff625a7e4d0ca https://www.encodeproject.org/files/ENCFF838TNE/@@download/ENCFF838TNE.bigWig GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF364NQK bigWig fold change over control ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND 932738389 ENCODE Processing Pipeline d3f11cdb95a99ae56e29d590d31070e6 https://www.encodeproject.org/files/ENCFF364NQK/@@download/ENCFF364NQK.bigWig hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF998MXV bigWig signal p-value ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF730MQF 965432937 ENCODE Processing Pipeline a50d2584f6847851d286e6e3248c0f75 https://www.encodeproject.org/files/ENCFF998MXV/@@download/ENCFF998MXV.bigWig hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF202QIE bigWig fold change over control ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF064LQH, ENCFF666QHO, ENCFF889VIV 935169072 ENCODE Processing Pipeline 4cbb2cda7bb655f0dbd0d05f9dc06c62 https://www.encodeproject.org/files/ENCFF202QIE/@@download/ENCFF202QIE.bigWig GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF149XXL bigWig fold change over control ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF064LQH, ENCFF889VIV, ENCFF906RFX 796258134 ENCODE Processing Pipeline 0d6ec465e0467769f1d4a19bee30462e https://www.encodeproject.org/files/ENCFF149XXL/@@download/ENCFF149XXL.bigWig GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF812TWH bigWig fold change over control ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF730MQF 789875836 ENCODE Processing Pipeline 4fea29c2718e75a56cdefe3044530fe6 https://www.encodeproject.org/files/ENCFF812TWH/@@download/ENCFF812TWH.bigWig hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF115GQW bigWig fold change over control ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF064LQH, ENCFF666QHO, ENCFF889VIV, ENCFF906RFX 1275028968 ENCODE Processing Pipeline fa8a9b76b610286a9a9a27a66f5d6067 https://www.encodeproject.org/files/ENCFF115GQW/@@download/ENCFF115GQW.bigWig GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF695DDS bigWig fold change over control ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND, ENCFF730MQF 1285445296 ENCODE Processing Pipeline 56e72128fd3dac5b98c07b464a1263a3 https://www.encodeproject.org/files/ENCFF695DDS/@@download/ENCFF695DDS.bigWig hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF856YAY bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF064LQH, ENCFF666QHO, ENCFF889VIV 5982622 ENCODE Processing Pipeline 5f8d30832faf08845a6787bad3717bc8 https://www.encodeproject.org/files/ENCFF856YAY/@@download/ENCFF856YAY.bed.gz GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF918PJO bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF064LQH, ENCFF666QHO, ENCFF889VIV, ENCFF906RFX 6432587 ENCODE Processing Pipeline 566d66e9039fbe7ed9eb3f6abb331d39 https://www.encodeproject.org/files/ENCFF918PJO/@@download/ENCFF918PJO.bed.gz GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF466YRO bigBed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF856YAY 13800690 ENCODE Processing Pipeline 09f7cfc29a5427802af68898201a8a92 https://www.encodeproject.org/files/ENCFF466YRO/@@download/ENCFF466YRO.bigBed GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF748IZL bigBed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF417KAW 13823278 ENCODE Processing Pipeline 99f13797766004c3caf40f131d20e295 https://www.encodeproject.org/files/ENCFF748IZL/@@download/ENCFF748IZL.bigBed hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF417KAW bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND 6003450 ENCODE Processing Pipeline 682c4829a61fc9d745876d973a2cc3cf https://www.encodeproject.org/files/ENCFF417KAW/@@download/ENCFF417KAW.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF963ROK bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND, ENCFF730MQF 6441232 ENCODE Processing Pipeline f0f456d135a252dd0ac373896cf8953d https://www.encodeproject.org/files/ENCFF963ROK/@@download/ENCFF963ROK.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF427XOT bigBed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF222WLA 11645743 ENCODE Processing Pipeline 3a700aa56678d0a81489f92b5d25fb32 https://www.encodeproject.org/files/ENCFF427XOT/@@download/ENCFF427XOT.bigBed hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF518MQA bed narrowPeak optimal idr thresholded peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF419RSJ, ENCFF765CSV, ENCFF856YAY, ENCFF918PJO 971157 ENCODE Processing Pipeline bb1e889759e59dfd428c4dc4cfdf2739 https://www.encodeproject.org/files/ENCFF518MQA/@@download/ENCFF518MQA.bed.gz GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF765CSV bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF064LQH, ENCFF889VIV, ENCFF906RFX 5793993 ENCODE Processing Pipeline 80d8af617ef03bcf90f1e404c333325b https://www.encodeproject.org/files/ENCFF765CSV/@@download/ENCFF765CSV.bed.gz GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF222WLA bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF730MQF 5831402 ENCODE Processing Pipeline 292a33d074157fe9cb5d3ea74e13f18b https://www.encodeproject.org/files/ENCFF222WLA/@@download/ENCFF222WLA.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF171SXJ bigBed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF765CSV 11611310 ENCODE Processing Pipeline c71e9979caf22057962595537eeabc13 https://www.encodeproject.org/files/ENCFF171SXJ/@@download/ENCFF171SXJ.bigBed GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF429IKR bigBed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF963ROK 13997189 ENCODE Processing Pipeline e833e203339f8c7c03ff3bf962538f46 https://www.encodeproject.org/files/ENCFF429IKR/@@download/ENCFF429IKR.bigBed hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF572UNE bigBed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF918PJO 13990953 ENCODE Processing Pipeline 122d7d08e8d977a6b9fad89da973cf2d https://www.encodeproject.org/files/ENCFF572UNE/@@download/ENCFF572UNE.bigBed GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF987MQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF518MQA 1545366 ENCODE Processing Pipeline 4eaecddc971ab411362e5cfffd26ddc7 https://www.encodeproject.org/files/ENCFF987MQJ/@@download/ENCFF987MQJ.bigBed GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF418WAW bed narrowPeak optimal idr thresholded peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF001TDO, ENCFF222WLA, ENCFF417KAW, ENCFF963ROK 969434 ENCODE Processing Pipeline 3056834266bad8a9c6e898a1b1c33d74 https://www.encodeproject.org/files/ENCFF418WAW/@@download/ENCFF418WAW.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF160VIT bigBed narrowPeak optimal idr thresholded peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1, 2 ENCFF418WAW 1542767 ENCODE Processing Pipeline 018ecb25f21b2e675dcd3b2334feeb4e https://www.encodeproject.org/files/ENCFF160VIT/@@download/ENCFF160VIT.bigBed hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF432ZKW fastq reads ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF229WFY 3400587448 Michael Snyder, Stanford 0dccb1060b52d34f867c547b8f2520fd https://www.encodeproject.org/files/ENCFF432ZKW/@@download/ENCFF432ZKW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF229WFY fastq reads ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF432ZKW 3490377990 Michael Snyder, Stanford a492f8c08cf8f25fc4038d555568b779 https://www.encodeproject.org/files/ENCFF229WFY/@@download/ENCFF229WFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF567VGL bam unfiltered alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF229WFY, ENCFF432ZKW, ENCFF807MUK 7496621262 ENCODE Processing Pipeline 34f2ef44d0a702cb5521b213d5c871f1 https://www.encodeproject.org/files/ENCFF567VGL/@@download/ENCFF567VGL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF309HEK bam unfiltered alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF229WFY, ENCFF432ZKW, ENCFF643CGH 7503500274 ENCODE Processing Pipeline d72fdfe524079060f868a75ad066d4e7 https://www.encodeproject.org/files/ENCFF309HEK/@@download/ENCFF309HEK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF641XRH bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF229WFY, ENCFF432ZKW, ENCFF807MUK 6204396797 ENCODE Processing Pipeline e7b0abf46050a069601c4d3648732cfa https://www.encodeproject.org/files/ENCFF641XRH/@@download/ENCFF641XRH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF063VDZ bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF229WFY, ENCFF432ZKW, ENCFF643CGH 6206432397 ENCODE Processing Pipeline 692b24352199b43ee271db436b665b08 https://www.encodeproject.org/files/ENCFF063VDZ/@@download/ENCFF063VDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF224UDE bigWig signal p-value ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF641XRH 1505501725 ENCODE Processing Pipeline 6d6b9032b495f94ea97f9fa107daf3ec https://www.encodeproject.org/files/ENCFF224UDE/@@download/ENCFF224UDE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF188TWG bigWig fold change over control ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF641XRH 1635179067 ENCODE Processing Pipeline 39672f03077d54de2670d461e8b79a51 https://www.encodeproject.org/files/ENCFF188TWG/@@download/ENCFF188TWG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF498TWK bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF641XRH 6554065 ENCODE Processing Pipeline 2f33d48990c9f5872e123eb534154a60 https://www.encodeproject.org/files/ENCFF498TWK/@@download/ENCFF498TWK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF237EAP bigBed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF498TWK 11124884 ENCODE Processing Pipeline 98a92ff389722e419262a382c46e70bd https://www.encodeproject.org/files/ENCFF237EAP/@@download/ENCFF237EAP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF509XIN bigBed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF932YMZ 11135499 ENCODE Processing Pipeline de7757561fe59fe75bcf20c45e42e313 https://www.encodeproject.org/files/ENCFF509XIN/@@download/ENCFF509XIN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF075TNZ bigWig fold change over control ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF063VDZ 1648127991 ENCODE Processing Pipeline a673731901467c299e25c534847d74b2 https://www.encodeproject.org/files/ENCFF075TNZ/@@download/ENCFF075TNZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF195CYR bigWig signal p-value ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF063VDZ 1323498620 ENCODE Processing Pipeline fcf56783bb175d09e08c31f67bf0c247 https://www.encodeproject.org/files/ENCFF195CYR/@@download/ENCFF195CYR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF647FLX fastq reads ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF229VLS 3029985492 Michael Snyder, Stanford 1b889a0d27aa65cbec49cc29abdb222e https://www.encodeproject.org/files/ENCFF647FLX/@@download/ENCFF647FLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF229VLS fastq reads ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF647FLX 3023505293 Michael Snyder, Stanford 850ad6d3d143a322f29c07c985ff3c06 https://www.encodeproject.org/files/ENCFF229VLS/@@download/ENCFF229VLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF710KSP bam unfiltered alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF229VLS, ENCFF643CGH, ENCFF647FLX 5921095147 ENCODE Processing Pipeline 3fe4325a613a45a5f56d90acaf58675b https://www.encodeproject.org/files/ENCFF710KSP/@@download/ENCFF710KSP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF046FPH bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF229VLS, ENCFF643CGH, ENCFF647FLX 5036177731 ENCODE Processing Pipeline 6664ca1756133be639f429072ff99743 https://www.encodeproject.org/files/ENCFF046FPH/@@download/ENCFF046FPH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF434EBD bam unfiltered alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF229VLS, ENCFF647FLX, ENCFF807MUK 5912830589 ENCODE Processing Pipeline c78530ed0e89abb2e8493c7e2fa9ef7b https://www.encodeproject.org/files/ENCFF434EBD/@@download/ENCFF434EBD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF555DYC bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF229VLS, ENCFF647FLX, ENCFF807MUK 5036887195 ENCODE Processing Pipeline 3f8a5339b21f56f0e1b8ad72355084d3 https://www.encodeproject.org/files/ENCFF555DYC/@@download/ENCFF555DYC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF514WBU bigWig signal p-value ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF555DYC 1502404410 ENCODE Processing Pipeline bd5383330e1aff6b59a94a9c9124719c https://www.encodeproject.org/files/ENCFF514WBU/@@download/ENCFF514WBU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF324GHB bigWig signal p-value ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF046FPH 1288500783 ENCODE Processing Pipeline b2040e1fd5a5b6d721cb3827f94a32fc https://www.encodeproject.org/files/ENCFF324GHB/@@download/ENCFF324GHB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF175TZT bigWig fold change over control ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF555DYC 1489414491 ENCODE Processing Pipeline e4b2d875788047dffc926059b85ec647 https://www.encodeproject.org/files/ENCFF175TZT/@@download/ENCFF175TZT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF846ORO bigWig signal p-value ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF555DYC, ENCFF641XRH 1975196615 ENCODE Processing Pipeline 943625a5bd3d708cfbc89dce789f640b https://www.encodeproject.org/files/ENCFF846ORO/@@download/ENCFF846ORO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF360WCH bigWig signal p-value ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF046FPH, ENCFF063VDZ 1938066290 ENCODE Processing Pipeline 87571f00e2fecefb0dba2c79eccc43fb https://www.encodeproject.org/files/ENCFF360WCH/@@download/ENCFF360WCH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF732YBS bigWig fold change over control ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF046FPH 1493549453 ENCODE Processing Pipeline 39094c446dc5a894b576fcde2e0fc389 https://www.encodeproject.org/files/ENCFF732YBS/@@download/ENCFF732YBS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF122KXG bigWig fold change over control ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF046FPH, ENCFF063VDZ 2113512971 ENCODE Processing Pipeline b144af33dfd54737c4a8a22e9098403e https://www.encodeproject.org/files/ENCFF122KXG/@@download/ENCFF122KXG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF749LNK bigWig fold change over control ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF555DYC, ENCFF641XRH 2165770473 ENCODE Processing Pipeline 03a0388421a6b6c67a9f94f76c3077f1 https://www.encodeproject.org/files/ENCFF749LNK/@@download/ENCFF749LNK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF932YMZ bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF063VDZ 6553694 ENCODE Processing Pipeline 8a0328e3ea9cce029ed87311b5a37b59 https://www.encodeproject.org/files/ENCFF932YMZ/@@download/ENCFF932YMZ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF059TIA bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF046FPH 6491322 ENCODE Processing Pipeline 077b76a1f85ec3c74e28e4f2022f2510 https://www.encodeproject.org/files/ENCFF059TIA/@@download/ENCFF059TIA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF409ZMZ bigBed narrowPeak conservative idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF458OXC 58749 ENCODE Processing Pipeline 4980797523934f97ee40b8a3192325f4 https://www.encodeproject.org/files/ENCFF409ZMZ/@@download/ENCFF409ZMZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF471HZU bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF046FPH, ENCFF063VDZ 7163389 ENCODE Processing Pipeline 05c9aa92d56333343f4e286bd1e3586e https://www.encodeproject.org/files/ENCFF471HZU/@@download/ENCFF471HZU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF832ONJ bigBed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF059TIA 11116212 ENCODE Processing Pipeline f042afccd8a854c9e6075f6eb8b5a1a0 https://www.encodeproject.org/files/ENCFF832ONJ/@@download/ENCFF832ONJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF349FWF bigBed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF787GZZ 11106747 ENCODE Processing Pipeline 8449fbd4992fda2dc5f1877a90575a89 https://www.encodeproject.org/files/ENCFF349FWF/@@download/ENCFF349FWF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF895NUK bigBed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF055TPM 11234832 ENCODE Processing Pipeline 50fa3ced4b312e5ed5a6846da0652285 https://www.encodeproject.org/files/ENCFF895NUK/@@download/ENCFF895NUK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF458OXC bed narrowPeak conservative idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF059TIA, ENCFF419RSJ, ENCFF471HZU, ENCFF932YMZ 8330 ENCODE Processing Pipeline 19db3bb7a27c6fee4a0563874b62c8db https://www.encodeproject.org/files/ENCFF458OXC/@@download/ENCFF458OXC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF787GZZ bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF555DYC 6495302 ENCODE Processing Pipeline d5d77e13ad5c4f8e2b44eec2fd023e0d https://www.encodeproject.org/files/ENCFF787GZZ/@@download/ENCFF787GZZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF055TPM bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF555DYC, ENCFF641XRH 7176608 ENCODE Processing Pipeline 1822f96fa7992554ccce94d8c4a4e31f https://www.encodeproject.org/files/ENCFF055TPM/@@download/ENCFF055TPM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF793NCA bigBed narrowPeak optimal idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF786PVX 111234 ENCODE Processing Pipeline 3bb9ba7d1c50462759f4a90e4cac4c4d https://www.encodeproject.org/files/ENCFF793NCA/@@download/ENCFF793NCA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF233MDN bigBed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF471HZU 11260094 ENCODE Processing Pipeline b103061b87325cc24ac4d596333654dc https://www.encodeproject.org/files/ENCFF233MDN/@@download/ENCFF233MDN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF786PVX bed narrowPeak optimal idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF059TIA, ENCFF419RSJ, ENCFF471HZU, ENCFF932YMZ 33033 ENCODE Processing Pipeline c6744b3a0dc99a621abc761a081dde86 https://www.encodeproject.org/files/ENCFF786PVX/@@download/ENCFF786PVX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF445LJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF084DFH 112085 ENCODE Processing Pipeline f84e7060116626440e9a24c75a2a52b6 https://www.encodeproject.org/files/ENCFF445LJQ/@@download/ENCFF445LJQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF546ZWS bed narrowPeak conservative idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF055TPM, ENCFF498TWK, ENCFF787GZZ 8550 ENCODE Processing Pipeline bf1065395ec15adeab131888c5d6e71b https://www.encodeproject.org/files/ENCFF546ZWS/@@download/ENCFF546ZWS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF624BRM bigBed narrowPeak conservative idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF546ZWS 58497 ENCODE Processing Pipeline 1e5fd1c3e7ce7433b4e26f56c68545fd https://www.encodeproject.org/files/ENCFF624BRM/@@download/ENCFF624BRM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF084DFH bed narrowPeak optimal idr thresholded peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF055TPM, ENCFF498TWK, ENCFF787GZZ 34025 ENCODE Processing Pipeline 3a0e0dc2218f54a00e40fd395ac02f6d https://www.encodeproject.org/files/ENCFF084DFH/@@download/ENCFF084DFH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF109QCJ bam unfiltered alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF807MUK, ENCFF884TDT, ENCFF961XAS 8224545979 ENCODE Processing Pipeline 29019a389f6684b0f0515b336b5e4e49 https://www.encodeproject.org/files/ENCFF109QCJ/@@download/ENCFF109QCJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF305EOC bam unfiltered alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF373VCW, ENCFF489ABL, ENCFF807MUK 5565662885 ENCODE Processing Pipeline c56e93cde376a6a17007e4f8ae6e01da https://www.encodeproject.org/files/ENCFF305EOC/@@download/ENCFF305EOC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF489ABL fastq reads ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 1 ENCFF373VCW 2510104640 Michael Snyder, Stanford f9554b2710d290d9b1a21eb0a942ea8c SRA:SRR5111979 https://www.encodeproject.org/files/ENCFF489ABL/@@download/ENCFF489ABL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF373VCW fastq reads ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 1 100 paired-ended 2 ENCFF489ABL 2576711528 Michael Snyder, Stanford ba86fee1701cdc4cbf6c6621c5e606d6 SRA:SRR5111979 https://www.encodeproject.org/files/ENCFF373VCW/@@download/ENCFF373VCW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF961XAS fastq reads ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 1 100 paired-ended 2 ENCFF884TDT 3979834248 Michael Snyder, Stanford 32e0c1f98bc718fbe123a221c790458a SRA:SRR5111980 https://www.encodeproject.org/files/ENCFF961XAS/@@download/ENCFF961XAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF884TDT fastq reads ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 1 100 paired-ended 1 ENCFF961XAS 3961167013 Michael Snyder, Stanford b02b50f86a08ff766e2adf0b991e401c SRA:SRR5111980 https://www.encodeproject.org/files/ENCFF884TDT/@@download/ENCFF884TDT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF409MLU bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF373VCW, ENCFF489ABL, ENCFF807MUK 4868673905 ENCODE Processing Pipeline a1248edfe9d178f75a3f2b6ee82eddcd https://www.encodeproject.org/files/ENCFF409MLU/@@download/ENCFF409MLU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF863CKR bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF807MUK, ENCFF884TDT, ENCFF961XAS 6231348392 ENCODE Processing Pipeline 6ad96b8648ef9952860c859a37bccd3f https://www.encodeproject.org/files/ENCFF863CKR/@@download/ENCFF863CKR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF269BPJ bigWig signal p-value ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF409MLU, ENCFF583FAG, ENCFF863CKR 2044790913 ENCODE Processing Pipeline 0ffaa7eab8d2886d0d048d3b2e8dbecb https://www.encodeproject.org/files/ENCFF269BPJ/@@download/ENCFF269BPJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF917BCD bigWig fold change over control ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF409MLU, ENCFF583FAG, ENCFF863CKR 2244644227 ENCODE Processing Pipeline 7d402cfc22abec044a220e1b6217877d https://www.encodeproject.org/files/ENCFF917BCD/@@download/ENCFF917BCD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF320IFH bam unfiltered alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF373VCW, ENCFF489ABL, ENCFF643CGH 5574666188 ENCODE Processing Pipeline 34fe12fb6cf25f46eced6604dbe3d7fd https://www.encodeproject.org/files/ENCFF320IFH/@@download/ENCFF320IFH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF944MAN bam unfiltered alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF643CGH, ENCFF884TDT, ENCFF961XAS 8231374345 ENCODE Processing Pipeline b82ddf211ba652632a73f941272984ab https://www.encodeproject.org/files/ENCFF944MAN/@@download/ENCFF944MAN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF170NQD bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF373VCW, ENCFF489ABL, ENCFF643CGH 4873363589 ENCODE Processing Pipeline fd1c8bccc0467f453f122846ca72428b https://www.encodeproject.org/files/ENCFF170NQD/@@download/ENCFF170NQD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF516CKJ bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF643CGH, ENCFF884TDT, ENCFF961XAS 6235531970 ENCODE Processing Pipeline e3dbf37e27bde4e521a029985bbc9220 https://www.encodeproject.org/files/ENCFF516CKJ/@@download/ENCFF516CKJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF351ELS bigWig signal p-value ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF170NQD, ENCFF426RDP 1149891794 ENCODE Processing Pipeline 8b8d68907be10c4c72f02a0ab568f545 https://www.encodeproject.org/files/ENCFF351ELS/@@download/ENCFF351ELS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF444DTP bigWig signal p-value ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF516CKJ 1671936780 ENCODE Processing Pipeline 80798c212fa2790b38972ca9a006f949 https://www.encodeproject.org/files/ENCFF444DTP/@@download/ENCFF444DTP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF162OBI bigWig signal p-value ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF170NQD, ENCFF291AFY, ENCFF426RDP, ENCFF516CKJ 2003692788 ENCODE Processing Pipeline fc66e08e600a613678493bcccc420f42 https://www.encodeproject.org/files/ENCFF162OBI/@@download/ENCFF162OBI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF012WQR bigWig fold change over control ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF170NQD, ENCFF426RDP 1153608421 ENCODE Processing Pipeline da515f87e2acf072cf5432d693925d4c https://www.encodeproject.org/files/ENCFF012WQR/@@download/ENCFF012WQR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF859VXM bigWig fold change over control ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF516CKJ 1760052585 ENCODE Processing Pipeline f05f7e0d5ee9ddd6073691d1dbf02d26 https://www.encodeproject.org/files/ENCFF859VXM/@@download/ENCFF859VXM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF244WBV bigWig fold change over control ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF170NQD, ENCFF291AFY, ENCFF426RDP, ENCFF516CKJ 2248919953 ENCODE Processing Pipeline bd9d8c829e693d4b2f5df772f4fe0a61 https://www.encodeproject.org/files/ENCFF244WBV/@@download/ENCFF244WBV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF568JHS bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF170NQD, ENCFF291AFY, ENCFF426RDP, ENCFF516CKJ 7234795 ENCODE Processing Pipeline 98c1e057fb385daf9ebbfcefb513d77d https://www.encodeproject.org/files/ENCFF568JHS/@@download/ENCFF568JHS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF107BOU bigBed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF568JHS 13288067 ENCODE Processing Pipeline 5e64cab96d9b7b8bb8e9a86a67641674 https://www.encodeproject.org/files/ENCFF107BOU/@@download/ENCFF107BOU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF451NNL bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF170NQD, ENCFF426RDP 6614814 ENCODE Processing Pipeline 5a54d8348fd15a069de86514565207f4 https://www.encodeproject.org/files/ENCFF451NNL/@@download/ENCFF451NNL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF759YHJ bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF291AFY, ENCFF426RDP, ENCFF516CKJ 6919533 ENCODE Processing Pipeline b5572eb378a7b735a2d06a574b95b884 https://www.encodeproject.org/files/ENCFF759YHJ/@@download/ENCFF759YHJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF441XSO bigBed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF759YHJ 13377275 ENCODE Processing Pipeline 72ab59a22785a4214d1974e59af9a761 https://www.encodeproject.org/files/ENCFF441XSO/@@download/ENCFF441XSO.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF843SQA bigBed narrowPeak conservative idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF471NRX 397443 ENCODE Processing Pipeline dd9ebf3e7690650340f37067e87e699e https://www.encodeproject.org/files/ENCFF843SQA/@@download/ENCFF843SQA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF083YFJ bigBed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF451NNL 13302940 ENCODE Processing Pipeline 67bbdc907fec7eec87f65876cdb87438 https://www.encodeproject.org/files/ENCFF083YFJ/@@download/ENCFF083YFJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF471NRX bed narrowPeak conservative idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF419RSJ, ENCFF451NNL, ENCFF568JHS, ENCFF759YHJ 192003 ENCODE Processing Pipeline 923e150ddd33d826bc5065af8255ca58 https://www.encodeproject.org/files/ENCFF471NRX/@@download/ENCFF471NRX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF401IAI bed narrowPeak optimal idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF419RSJ, ENCFF451NNL, ENCFF568JHS, ENCFF759YHJ 237900 ENCODE Processing Pipeline a212ed8e29836c79e8471aa2fb46f3ad https://www.encodeproject.org/files/ENCFF401IAI/@@download/ENCFF401IAI.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF843EAP bigBed narrowPeak optimal idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF401IAI 574227 ENCODE Processing Pipeline acbf7c92b20d4f12a86979a7e5acb468 https://www.encodeproject.org/files/ENCFF843EAP/@@download/ENCFF843EAP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF730RZA bigWig signal p-value ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF583FAG, ENCFF863CKR 1805094666 ENCODE Processing Pipeline 59dfadfbe1a0d527a06f8f279073d0c9 https://www.encodeproject.org/files/ENCFF730RZA/@@download/ENCFF730RZA.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF120AQK bigBed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF938AEH 13297917 ENCODE Processing Pipeline 61ed6c5f0916c946b0fd3b83c332ccff https://www.encodeproject.org/files/ENCFF120AQK/@@download/ENCFF120AQK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF833INE bigBed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF501NKG 13277889 ENCODE Processing Pipeline f3d48156bca9ddb29496190271d56867 https://www.encodeproject.org/files/ENCFF833INE/@@download/ENCFF833INE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF214UYT bigBed narrowPeak conservative idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF925GZC 493711 ENCODE Processing Pipeline 317adf806e5730b8f39d5fd63f27c417 https://www.encodeproject.org/files/ENCFF214UYT/@@download/ENCFF214UYT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF248YEP bigWig fold change over control ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF583FAG, ENCFF863CKR 1694381726 ENCODE Processing Pipeline 95d749a8d3fb581b78dec28beb8bc629 https://www.encodeproject.org/files/ENCFF248YEP/@@download/ENCFF248YEP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF701BHY bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF049MPQ, ENCFF583FAG, ENCFF863CKR 6919263 ENCODE Processing Pipeline 16d40cf2f5aeb3576952248750aaf2f2 https://www.encodeproject.org/files/ENCFF701BHY/@@download/ENCFF701BHY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF365WFM bed narrowPeak optimal idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF001TDO, ENCFF501NKG, ENCFF701BHY, ENCFF938AEH 239330 ENCODE Processing Pipeline 03b8c0259791519294cbf7103dec34a8 https://www.encodeproject.org/files/ENCFF365WFM/@@download/ENCFF365WFM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF876SWF bigWig signal p-value ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF409MLU, ENCFF583FAG 944006072 ENCODE Processing Pipeline 5e3973b6d1698555334384711e42077d https://www.encodeproject.org/files/ENCFF876SWF/@@download/ENCFF876SWF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF705YFQ bigWig fold change over control ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF409MLU, ENCFF583FAG 1154993688 ENCODE Processing Pipeline 9915724300221d59845cee4359b03f1d https://www.encodeproject.org/files/ENCFF705YFQ/@@download/ENCFF705YFQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF938AEH bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF409MLU, ENCFF583FAG 6619002 ENCODE Processing Pipeline a7db975eef09f860be95d3defe5e290f https://www.encodeproject.org/files/ENCFF938AEH/@@download/ENCFF938AEH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF648RTP bigBed narrowPeak optimal idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF365WFM 572971 ENCODE Processing Pipeline 6b32704a3ca0688a9f5c43f4379f0981 https://www.encodeproject.org/files/ENCFF648RTP/@@download/ENCFF648RTP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF925GZC bed narrowPeak conservative idr thresholded peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF001TDO, ENCFF501NKG, ENCFF701BHY, ENCFF938AEH 196358 ENCODE Processing Pipeline d0b08211999ef00f5919710b5832b7f8 https://www.encodeproject.org/files/ENCFF925GZC/@@download/ENCFF925GZC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF501NKG bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1, 3 ENCFF049MPQ, ENCFF409MLU, ENCFF583FAG, ENCFF863CKR 7242609 ENCODE Processing Pipeline 6da68fe3abc7a73f68afa3bb40f4032a https://www.encodeproject.org/files/ENCFF501NKG/@@download/ENCFF501NKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF554ZJO bigBed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 ENCFF701BHY 13360815 ENCODE Processing Pipeline fbb8d023cbf0c8f1a02ae34d79406df2 https://www.encodeproject.org/files/ENCFF554ZJO/@@download/ENCFF554ZJO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF452ELI bam unfiltered alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOU, ENCFF002EHY, ENCFF807MUK 7296218388 ENCODE Processing Pipeline 0e8e7d7c7c9f3b6c1f7022a711eff5c1 https://www.encodeproject.org/files/ENCFF452ELI/@@download/ENCFF452ELI.bam hg19 released mild to moderate bottlenecking ENCFF134AXG bam unfiltered alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EHZ, ENCFF002EIE, ENCFF807MUK 7419607699 ENCODE Processing Pipeline 206eec3599733df3c6f67cfc6a7204db https://www.encodeproject.org/files/ENCFF134AXG/@@download/ENCFF134AXG.bam hg19 released mild to moderate bottlenecking ENCFF779RGH bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 1454911901 ENCODE Processing Pipeline 2886892e899d89d2b2682128b3da9844 https://www.encodeproject.org/files/ENCFF779RGH/@@download/ENCFF779RGH.bigWig hg19 released mild to moderate bottlenecking ENCFF630LNK bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 1771651682 ENCODE Processing Pipeline c237d5e591ac60a9c71106aa3c315186 https://www.encodeproject.org/files/ENCFF630LNK/@@download/ENCFF630LNK.bigWig hg19 released mild to moderate bottlenecking ENCFF002DOU fastq reads ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHY 3411084077 Michael Snyder, Stanford c79b7b510112987129a511fdea51e62f SRA:SRR5111842 https://www.encodeproject.org/files/ENCFF002DOU/@@download/ENCFF002DOU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFN/ released mild to moderate bottlenecking ENCFF002EHY fastq reads ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DOU 3319641962 Michael Snyder, Stanford 57abbfa962e7d6e60505b461f63a1fe7 SRA:SRR5111842 https://www.encodeproject.org/files/ENCFF002EHY/@@download/ENCFF002EHY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFO/ released mild to moderate bottlenecking ENCFF002EHZ fastq reads ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EIE 3428252906 Michael Snyder, Stanford e12816db7e240308ff9b4cd6bc5c9260 SRA:SRR5111843 https://www.encodeproject.org/files/ENCFF002EHZ/@@download/ENCFF002EHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIR/ released mild to moderate bottlenecking ENCFF002EIE fastq reads ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EHZ 3516257404 Michael Snyder, Stanford 42396d063afb74bfbb1a3554ee00c225 SRA:SRR5111843 https://www.encodeproject.org/files/ENCFF002EIE/@@download/ENCFF002EIE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIO/ released mild to moderate bottlenecking ENCFF499XHK bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF046BMR, ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 2157090243 ENCODE Processing Pipeline f883ff2c543c078fe73b372979e93048 https://www.encodeproject.org/files/ENCFF499XHK/@@download/ENCFF499XHK.bigWig hg19 released mild to moderate bottlenecking ENCFF264FDW bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF046BMR, ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 2318061011 ENCODE Processing Pipeline 4f8d2f2e419bc2fc58483b9e9800f280 https://www.encodeproject.org/files/ENCFF264FDW/@@download/ENCFF264FDW.bigWig hg19 released mild to moderate bottlenecking ENCFF969UCK bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 6808646 ENCODE Processing Pipeline 727a01be61c11cc017347fcf3b8977cb https://www.encodeproject.org/files/ENCFF969UCK/@@download/ENCFF969UCK.bed.gz hg19 released mild to moderate bottlenecking ENCFF726MLI bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF969UCK 11149536 ENCODE Processing Pipeline 767509e94352c671fb7ed85eea3ac29f https://www.encodeproject.org/files/ENCFF726MLI/@@download/ENCFF726MLI.bigBed hg19 released mild to moderate bottlenecking ENCFF114SZB bigBed narrowPeak conservative idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF198MNH 161070 ENCODE Processing Pipeline d2b4933987d503dabacfdc5b682f5efd https://www.encodeproject.org/files/ENCFF114SZB/@@download/ENCFF114SZB.bigBed hg19 released mild to moderate bottlenecking ENCFF427ZLR bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 6995668 ENCODE Processing Pipeline 4842029b3a8be15a4b00cdf1afd5c83c https://www.encodeproject.org/files/ENCFF427ZLR/@@download/ENCFF427ZLR.bed.gz hg19 released mild to moderate bottlenecking ENCFF198MNH bed narrowPeak conservative idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF039TDK, ENCFF427ZLR, ENCFF969UCK 56362 ENCODE Processing Pipeline 1373a3b6bd4635d331aa081efc3f638b https://www.encodeproject.org/files/ENCFF198MNH/@@download/ENCFF198MNH.bed.gz hg19 released mild to moderate bottlenecking ENCFF039TDK bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF046BMR, ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 7230104 ENCODE Processing Pipeline 7c4e4eb00fb508a72b6090160f1afe1d https://www.encodeproject.org/files/ENCFF039TDK/@@download/ENCFF039TDK.bed.gz hg19 released mild to moderate bottlenecking ENCFF365ICU bed narrowPeak optimal idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF039TDK, ENCFF427ZLR, ENCFF969UCK 95703 ENCODE Processing Pipeline 452936171288c14882683e4db423b6c3 https://www.encodeproject.org/files/ENCFF365ICU/@@download/ENCFF365ICU.bed.gz hg19 released mild to moderate bottlenecking ENCFF044XNQ bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF427ZLR 13211247 ENCODE Processing Pipeline 2994fc958701630e4a0359f1d884db55 https://www.encodeproject.org/files/ENCFF044XNQ/@@download/ENCFF044XNQ.bigBed hg19 released mild to moderate bottlenecking ENCFF015LIK bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF039TDK 13134744 ENCODE Processing Pipeline 78976301564502b28b2a478218f72efc https://www.encodeproject.org/files/ENCFF015LIK/@@download/ENCFF015LIK.bigBed hg19 released mild to moderate bottlenecking ENCFF651PRR bigBed narrowPeak optimal idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF365ICU 224375 ENCODE Processing Pipeline 91b6aedae94bf07fa9af45a727873347 https://www.encodeproject.org/files/ENCFF651PRR/@@download/ENCFF651PRR.bigBed hg19 released mild to moderate bottlenecking ENCFF138BUP bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EHZ, ENCFF002EIE, ENCFF807MUK 5948103223 ENCODE Processing Pipeline 4c62fa5ba6fd1e83cd03dad9acecfe34 https://www.encodeproject.org/files/ENCFF138BUP/@@download/ENCFF138BUP.bam hg19 released mild to moderate bottlenecking ENCFF046BMR bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOU, ENCFF002EHY, ENCFF807MUK 6225309619 ENCODE Processing Pipeline 43c7d8bfabb953bec0be617cb8c1b2af https://www.encodeproject.org/files/ENCFF046BMR/@@download/ENCFF046BMR.bam hg19 released mild to moderate bottlenecking ENCFF081OBL bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 1451018223 ENCODE Processing Pipeline 0a6dfc106a3b243e8a0a46d83d5b9bb9 https://www.encodeproject.org/files/ENCFF081OBL/@@download/ENCFF081OBL.bigWig hg19 archived mild to moderate bottlenecking ENCFF169HJO bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 1471767157 ENCODE Processing Pipeline c4c8d9fb55e2f1be87b8dd1ba3670484 https://www.encodeproject.org/files/ENCFF169HJO/@@download/ENCFF169HJO.bigWig hg19 released mild to moderate bottlenecking ENCFF392PXS bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF046BMR, ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 2173193683 ENCODE Processing Pipeline ff47cc9dc37d8e8ebde414dddd07c46e https://www.encodeproject.org/files/ENCFF392PXS/@@download/ENCFF392PXS.bigWig hg19 archived mild to moderate bottlenecking ENCFF261PYW bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 1766578064 ENCODE Processing Pipeline 5a699cf96194d564fb677d5155c12cc1 https://www.encodeproject.org/files/ENCFF261PYW/@@download/ENCFF261PYW.bigWig hg19 archived mild to moderate bottlenecking ENCFF112VPS bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 1717597188 ENCODE Processing Pipeline b81f99f1448a2f1f2986988e3e73dae3 https://www.encodeproject.org/files/ENCFF112VPS/@@download/ENCFF112VPS.bigWig hg19 released mild to moderate bottlenecking ENCFF340JSW bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF046BMR, ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 2337793793 ENCODE Processing Pipeline 389adc7d4e812c288ff74562d24eb0a8 https://www.encodeproject.org/files/ENCFF340JSW/@@download/ENCFF340JSW.bigWig hg19 archived mild to moderate bottlenecking ENCFF479OQC bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 6920778 ENCODE Processing Pipeline 61b8b88c886be4794f68e9b8d33abd73 https://www.encodeproject.org/files/ENCFF479OQC/@@download/ENCFF479OQC.bed.gz hg19 archived mild to moderate bottlenecking ENCFF406LXU bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF046BMR, ENCFF138BUP, ENCFF231HAE, ENCFF592OJO 7241961 ENCODE Processing Pipeline f73134e77f2ec0a7770ccd004969b2c8 https://www.encodeproject.org/files/ENCFF406LXU/@@download/ENCFF406LXU.bed.gz hg19 archived mild to moderate bottlenecking ENCFF025DUT bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF039TLE 13211466 ENCODE Processing Pipeline 61e33b9b4d5ae54d86ea0bfeb6229e89 https://www.encodeproject.org/files/ENCFF025DUT/@@download/ENCFF025DUT.bigBed hg19 archived mild to moderate bottlenecking ENCFF503ZWS bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF479OQC 11151332 ENCODE Processing Pipeline 9029a1ddfd34ea4bb89346e97f2345df https://www.encodeproject.org/files/ENCFF503ZWS/@@download/ENCFF503ZWS.bigBed hg19 archived mild to moderate bottlenecking ENCFF160BAS bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF406LXU 13134714 ENCODE Processing Pipeline 87a788f2de3167173fd80a0d96c35445 https://www.encodeproject.org/files/ENCFF160BAS/@@download/ENCFF160BAS.bigBed hg19 archived mild to moderate bottlenecking ENCFF039TLE bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 7057786 ENCODE Processing Pipeline e7a48ad12d4aa555f12cff5d03654341 https://www.encodeproject.org/files/ENCFF039TLE/@@download/ENCFF039TLE.bed.gz hg19 archived mild to moderate bottlenecking ENCFF036OCJ bam unfiltered alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EHZ, ENCFF002EIE, ENCFF643CGH 7430188853 ENCODE Processing Pipeline 4ec051b711283ec17f3b3f566e383c66 https://www.encodeproject.org/files/ENCFF036OCJ/@@download/ENCFF036OCJ.bam GRCh38 released mild to moderate bottlenecking ENCFF441RUG bam unfiltered alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOU, ENCFF002EHY, ENCFF643CGH 7308608624 ENCODE Processing Pipeline 2a887732024fddfa6bcc7504a462fbe0 https://www.encodeproject.org/files/ENCFF441RUG/@@download/ENCFF441RUG.bam GRCh38 released mild to moderate bottlenecking ENCFF833PBO bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOU, ENCFF002EHY, ENCFF643CGH 6230480258 ENCODE Processing Pipeline 216e3739245a77d8c8c38c2b627973af https://www.encodeproject.org/files/ENCFF833PBO/@@download/ENCFF833PBO.bam GRCh38 released mild to moderate bottlenecking ENCFF769PJV bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EHZ, ENCFF002EIE, ENCFF643CGH 5952870014 ENCODE Processing Pipeline bced00df2029413ceb92d863b38c427a https://www.encodeproject.org/files/ENCFF769PJV/@@download/ENCFF769PJV.bam GRCh38 released mild to moderate bottlenecking ENCFF310NMF bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF386EWJ, ENCFF456PZV, ENCFF833PBO 1554136720 ENCODE Processing Pipeline d1117ba9b53e9da6ef146482ff1edbd2 https://www.encodeproject.org/files/ENCFF310NMF/@@download/ENCFF310NMF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF653LTC bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF386EWJ, ENCFF456PZV, ENCFF769PJV 1470115004 ENCODE Processing Pipeline 79ef9ba22f5a90125fb887842e09ea64 https://www.encodeproject.org/files/ENCFF653LTC/@@download/ENCFF653LTC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF407QTF bigWig signal p-value ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF386EWJ, ENCFF456PZV, ENCFF769PJV, ENCFF833PBO 2160725081 ENCODE Processing Pipeline bfa61e4513e7baa11a31aab82ef5dc04 https://www.encodeproject.org/files/ENCFF407QTF/@@download/ENCFF407QTF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF489MCK bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF386EWJ, ENCFF456PZV, ENCFF833PBO 1767681636 ENCODE Processing Pipeline 1627ecfed5f0d4d3f3388306ebd8090c https://www.encodeproject.org/files/ENCFF489MCK/@@download/ENCFF489MCK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF223RDK bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF386EWJ, ENCFF456PZV, ENCFF769PJV 1717238740 ENCODE Processing Pipeline 7fe10f5fddf414f555191d406956736a https://www.encodeproject.org/files/ENCFF223RDK/@@download/ENCFF223RDK.bigWig GRCh38 released mild to moderate bottlenecking ENCFF806EVC bigWig fold change over control ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF386EWJ, ENCFF456PZV, ENCFF769PJV, ENCFF833PBO 2322268270 ENCODE Processing Pipeline ce109d10694aac4ef5f4a3b6bc19e640 https://www.encodeproject.org/files/ENCFF806EVC/@@download/ENCFF806EVC.bigWig GRCh38 released mild to moderate bottlenecking ENCFF789KES bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF851YCT 11176542 ENCODE Processing Pipeline 66bb9fa7f3c4142ecc184d91c2fa9c61 https://www.encodeproject.org/files/ENCFF789KES/@@download/ENCFF789KES.bigBed GRCh38 released mild to moderate bottlenecking ENCFF667IMU bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF074VNL 13148644 ENCODE Processing Pipeline b8fe7c04900a398358eaa20b935ffa24 https://www.encodeproject.org/files/ENCFF667IMU/@@download/ENCFF667IMU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF851YCT bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 ENCFF386EWJ, ENCFF456PZV, ENCFF769PJV 6783253 ENCODE Processing Pipeline 0f2b237114a978b2bd67fe6fbe2a922a https://www.encodeproject.org/files/ENCFF851YCT/@@download/ENCFF851YCT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF972QGT bigBed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF406OAQ 13226100 ENCODE Processing Pipeline bb8a7449cd864d17ad07c4ef8cb11602 https://www.encodeproject.org/files/ENCFF972QGT/@@download/ENCFF972QGT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF074VNL bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF386EWJ, ENCFF456PZV, ENCFF769PJV, ENCFF833PBO 7238958 ENCODE Processing Pipeline 82a8c8e06be82c475357e4a7405180f8 https://www.encodeproject.org/files/ENCFF074VNL/@@download/ENCFF074VNL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF801IEP bed narrowPeak conservative idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF074VNL, ENCFF406OAQ, ENCFF419RSJ, ENCFF851YCT 57619 ENCODE Processing Pipeline c480a2353a3676442d55ccd54a76bd06 https://www.encodeproject.org/files/ENCFF801IEP/@@download/ENCFF801IEP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF699KKT bigBed narrowPeak conservative idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF801IEP 163437 ENCODE Processing Pipeline 7101b32e47fc87817c924f0c280e8da5 https://www.encodeproject.org/files/ENCFF699KKT/@@download/ENCFF699KKT.bigBed GRCh38 released mild to moderate bottlenecking ENCFF406OAQ bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF386EWJ, ENCFF456PZV, ENCFF833PBO 7005943 ENCODE Processing Pipeline a6d246709a0d684487d6602678395fc9 https://www.encodeproject.org/files/ENCFF406OAQ/@@download/ENCFF406OAQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF169TCW bigBed narrowPeak optimal idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF785YII 228039 ENCODE Processing Pipeline 9743238d91d0581f5c9ef60088cf3675 https://www.encodeproject.org/files/ENCFF169TCW/@@download/ENCFF169TCW.bigBed GRCh38 released mild to moderate bottlenecking ENCFF785YII bed narrowPeak optimal idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF074VNL, ENCFF406OAQ, ENCFF419RSJ, ENCFF851YCT 97862 ENCODE Processing Pipeline e0abfa4b1bc5e5f1edc783d48d528c4e https://www.encodeproject.org/files/ENCFF785YII/@@download/ENCFF785YII.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF531ZQL bigBed narrowPeak conservative idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF855UKN 123436 ENCODE Processing Pipeline ebab3ea0b9c03a7f9fd42b4edd13e37d https://www.encodeproject.org/files/ENCFF531ZQL/@@download/ENCFF531ZQL.bigBed hg19 archived mild to moderate bottlenecking ENCFF116EAM bed narrowPeak optimal idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF039TLE, ENCFF406LXU, ENCFF479OQC 81695 ENCODE Processing Pipeline ed61691da991ed1bec05e808964ba7e8 https://www.encodeproject.org/files/ENCFF116EAM/@@download/ENCFF116EAM.bed.gz hg19 archived mild to moderate bottlenecking ENCFF410WGG bigBed narrowPeak optimal idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF116EAM 206232 ENCODE Processing Pipeline e7f4358b6414671f2b1df9e6220d8e05 https://www.encodeproject.org/files/ENCFF410WGG/@@download/ENCFF410WGG.bigBed hg19 archived mild to moderate bottlenecking ENCFF855UKN bed narrowPeak conservative idr thresholded peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF039TLE, ENCFF406LXU, ENCFF479OQC 45757 ENCODE Processing Pipeline 23a142313b6f8ebf19e722203783d128 https://www.encodeproject.org/files/ENCFF855UKN/@@download/ENCFF855UKN.bed.gz hg19 archived mild to moderate bottlenecking ENCFF259DTT bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF807MUK, ENCFF863JNZ 4636749100 ENCODE Processing Pipeline 5b4db8b4ee7c625f06720c31dbef0c6e https://www.encodeproject.org/files/ENCFF259DTT/@@download/ENCFF259DTT.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF805VTA bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF807MUK, ENCFF866JOT 4986970936 ENCODE Processing Pipeline 733c8193672c3ddf8e18b04126c452eb https://www.encodeproject.org/files/ENCFF805VTA/@@download/ENCFF805VTA.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF138BLI fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF866JOT 2267118801 Michael Snyder, Stanford a5fcaa49aaa5ef956d97b79a31796fb4 https://www.encodeproject.org/files/ENCFF138BLI/@@download/ENCFF138BLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF863JNZ fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF367FUJ 2060027303 Michael Snyder, Stanford 30aeec7ba9fb3a72e59e34bf9d4f5c84 https://www.encodeproject.org/files/ENCFF863JNZ/@@download/ENCFF863JNZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF367FUJ fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF863JNZ 2116943047 Michael Snyder, Stanford c17f697ecad755234a8bee508d77c41c https://www.encodeproject.org/files/ENCFF367FUJ/@@download/ENCFF367FUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF866JOT fastq reads ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF138BLI 2338438281 Michael Snyder, Stanford 27bc8d31916e8ab932f671c4b6aa5a20 https://www.encodeproject.org/files/ENCFF866JOT/@@download/ENCFF866JOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF225FNQ bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF807MUK, ENCFF866JOT 3738465864 ENCODE Processing Pipeline 6d50dbe56ab8f13c0195e385b7f2ef58 https://www.encodeproject.org/files/ENCFF225FNQ/@@download/ENCFF225FNQ.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF095GKP bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF807MUK, ENCFF863JNZ 3679269961 ENCODE Processing Pipeline accc8bed08877240fe8448e86d853e78 https://www.encodeproject.org/files/ENCFF095GKP/@@download/ENCFF095GKP.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF143QSX bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 1024343631 ENCODE Processing Pipeline 042cff17a23dcbd34a7b4cf1c3292049 https://www.encodeproject.org/files/ENCFF143QSX/@@download/ENCFF143QSX.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF641VNZ bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 1131624184 ENCODE Processing Pipeline 91d652f498ac5ca69bf88915af58c05a https://www.encodeproject.org/files/ENCFF641VNZ/@@download/ENCFF641VNZ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF379DEM bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF095GKP, ENCFF225FNQ, ENCFF287SKW, ENCFF941TZZ 1751738223 ENCODE Processing Pipeline 61fafdc2fe3dda0915425f8d8d3bee52 https://www.encodeproject.org/files/ENCFF379DEM/@@download/ENCFF379DEM.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF611EJA bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 1056488094 ENCODE Processing Pipeline 9518fa5656f486ec506238c3a13f49a1 https://www.encodeproject.org/files/ENCFF611EJA/@@download/ENCFF611EJA.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF706PMR bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 1055220069 ENCODE Processing Pipeline 3194d8baeb909c86de468e90512f32b6 https://www.encodeproject.org/files/ENCFF706PMR/@@download/ENCFF706PMR.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF167WPQ bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF095GKP, ENCFF225FNQ, ENCFF287SKW, ENCFF941TZZ 2002297645 ENCODE Processing Pipeline 82b2a22bc33ebc173a0ef934bb4b44b7 https://www.encodeproject.org/files/ENCFF167WPQ/@@download/ENCFF167WPQ.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF471IVB bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 6201438 ENCODE Processing Pipeline 14c7c83fca1383b1ca696bb3b1e6943d https://www.encodeproject.org/files/ENCFF471IVB/@@download/ENCFF471IVB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF054XUN bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 6240427 ENCODE Processing Pipeline b8c9e196eda9c2502b0db38eb8279690 https://www.encodeproject.org/files/ENCFF054XUN/@@download/ENCFF054XUN.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF717MTX bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF095GKP, ENCFF225FNQ, ENCFF287SKW, ENCFF941TZZ 7115395 ENCODE Processing Pipeline c0892878dfa8c186ac45614c84a16b7b https://www.encodeproject.org/files/ENCFF717MTX/@@download/ENCFF717MTX.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF403MRA bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF471IVB 11099099 ENCODE Processing Pipeline 0f583e1a23939b0f7153bc90bd7b3583 https://www.encodeproject.org/files/ENCFF403MRA/@@download/ENCFF403MRA.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF406QVK bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF054XUN 11161317 ENCODE Processing Pipeline d0876072ece4c26621408242395170fa https://www.encodeproject.org/files/ENCFF406QVK/@@download/ENCFF406QVK.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF481WFT bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF717MTX 13072255 ENCODE Processing Pipeline c28617719ddfaf5f85fd037cf96c108d https://www.encodeproject.org/files/ENCFF481WFT/@@download/ENCFF481WFT.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF273GJL bed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF054XUN, ENCFF471IVB, ENCFF717MTX 80672 ENCODE Processing Pipeline aeee6f6408a77cc93ed670d82e8f8ddc https://www.encodeproject.org/files/ENCFF273GJL/@@download/ENCFF273GJL.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF074KEB bigBed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF273GJL 181439 ENCODE Processing Pipeline bb1572f6ec86a2edd22ee3bcf5893123 https://www.encodeproject.org/files/ENCFF074KEB/@@download/ENCFF074KEB.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF711OSR bed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF054XUN, ENCFF471IVB, ENCFF717MTX 110065 ENCODE Processing Pipeline f1f2426bc50072ce5eede047ee65a239 https://www.encodeproject.org/files/ENCFF711OSR/@@download/ENCFF711OSR.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF159CTX bigBed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF711OSR 268866 ENCODE Processing Pipeline 4000d7f66884ddff89f4ba14196c6418 https://www.encodeproject.org/files/ENCFF159CTX/@@download/ENCFF159CTX.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF003VDC bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF643CGH, ENCFF866JOT 4989937472 ENCODE Processing Pipeline 1877b4e04bcd9d8c10993fa272dbe7f7 https://www.encodeproject.org/files/ENCFF003VDC/@@download/ENCFF003VDC.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF957HBR bam unfiltered alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF643CGH, ENCFF863JNZ 4642293472 ENCODE Processing Pipeline bda81d569353d7ad82c478944148a34f https://www.encodeproject.org/files/ENCFF957HBR/@@download/ENCFF957HBR.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF215GEB bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF643CGH, ENCFF863JNZ 3689350877 ENCODE Processing Pipeline a3cd87e6a7c58de423f8a0563170a25a https://www.encodeproject.org/files/ENCFF215GEB/@@download/ENCFF215GEB.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF311VCV bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF643CGH, ENCFF866JOT 3746619077 ENCODE Processing Pipeline 1b45843bc56e79c6eb97856fc5d6258d https://www.encodeproject.org/files/ENCFF311VCV/@@download/ENCFF311VCV.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF355NFK bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF215GEB, ENCFF879YMO 1027721759 ENCODE Processing Pipeline 8a7e7a1ef95728b416e5457969e67cd7 https://www.encodeproject.org/files/ENCFF355NFK/@@download/ENCFF355NFK.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF521TNA bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF311VCV, ENCFF574BGV 1022038617 ENCODE Processing Pipeline 7efb485f584a5faf40cac523a557c4f0 https://www.encodeproject.org/files/ENCFF521TNA/@@download/ENCFF521TNA.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF509EUD bigWig signal p-value ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF215GEB, ENCFF311VCV, ENCFF574BGV, ENCFF879YMO 1837936651 ENCODE Processing Pipeline 112ae9bbed63dbbf233ea364dd9159e3 https://www.encodeproject.org/files/ENCFF509EUD/@@download/ENCFF509EUD.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF395YNP bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF215GEB, ENCFF879YMO 1058283960 ENCODE Processing Pipeline d56ee879cb46d9fa446081ff0ec588ca https://www.encodeproject.org/files/ENCFF395YNP/@@download/ENCFF395YNP.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF139RPC bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF311VCV, ENCFF574BGV 1033727109 ENCODE Processing Pipeline fb1b248a11046e82dc85fb46d5f57100 https://www.encodeproject.org/files/ENCFF139RPC/@@download/ENCFF139RPC.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF028VTH bigWig fold change over control ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF215GEB, ENCFF311VCV, ENCFF574BGV, ENCFF879YMO 1997087922 ENCODE Processing Pipeline aaa84d1ab5936fcb2ffd9fc9e6b16214 https://www.encodeproject.org/files/ENCFF028VTH/@@download/ENCFF028VTH.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF774APE bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF032QRF 11181643 ENCODE Processing Pipeline efe56a123907ef3e5a540c5b2d651e49 https://www.encodeproject.org/files/ENCFF774APE/@@download/ENCFF774APE.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF032QRF bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF311VCV, ENCFF574BGV 6105812 ENCODE Processing Pipeline 312cc52fa4610345ef50f87fc1cae0e8 https://www.encodeproject.org/files/ENCFF032QRF/@@download/ENCFF032QRF.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF498UTH bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF215GEB, ENCFF311VCV, ENCFF574BGV, ENCFF879YMO 7078020 ENCODE Processing Pipeline 33d06f1b3094c55b4681f18401db1b15 https://www.encodeproject.org/files/ENCFF498UTH/@@download/ENCFF498UTH.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF424GGP bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF498UTH 13096499 ENCODE Processing Pipeline fba14cfee3d0ff1863f9c424cc003c8f https://www.encodeproject.org/files/ENCFF424GGP/@@download/ENCFF424GGP.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF344ITO bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF215GEB, ENCFF879YMO 6027699 ENCODE Processing Pipeline 0db50bc90d4c15119184aada64320838 https://www.encodeproject.org/files/ENCFF344ITO/@@download/ENCFF344ITO.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF394KMU bed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF032QRF, ENCFF344ITO, ENCFF419RSJ, ENCFF498UTH 83353 ENCODE Processing Pipeline 36f5212bae683bbdfb2245e4f09c506b https://www.encodeproject.org/files/ENCFF394KMU/@@download/ENCFF394KMU.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF328SQU bigBed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF344ITO 11103302 ENCODE Processing Pipeline 448f16ada56a24d2207db8dfeee2b824 https://www.encodeproject.org/files/ENCFF328SQU/@@download/ENCFF328SQU.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF035GFS bed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF032QRF, ENCFF344ITO, ENCFF419RSJ, ENCFF498UTH 112660 ENCODE Processing Pipeline ae14215287f40afa26b8176c3213bb81 https://www.encodeproject.org/files/ENCFF035GFS/@@download/ENCFF035GFS.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF442WUA bigBed narrowPeak conservative idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF394KMU 187444 ENCODE Processing Pipeline 69d1fff1208baada352bf36c83825378 https://www.encodeproject.org/files/ENCFF442WUA/@@download/ENCFF442WUA.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931HNY bigBed narrowPeak optimal idr thresholded peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF035GFS 274933 ENCODE Processing Pipeline a530b821094188417eb995e8dfb45bd9 https://www.encodeproject.org/files/ENCFF931HNY/@@download/ENCFF931HNY.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF299NCQ bam unfiltered alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 50 ENCFF198ANV, ENCFF807MUK 1145990168 ENCODE Processing Pipeline 9964e8c12ff45d23b2e021678fadff4a https://www.encodeproject.org/files/ENCFF299NCQ/@@download/ENCFF299NCQ.bam hg19 released low read depth, missing genetic modification characterization ENCFF268UIF bam unfiltered alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF463YWP, ENCFF807MUK 1989205223 ENCODE Processing Pipeline f217d4755cdfcca5129169ce6a1542ab https://www.encodeproject.org/files/ENCFF268UIF/@@download/ENCFF268UIF.bam hg19 released low read depth, missing genetic modification characterization ENCFF463YWP fastq reads ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1807015275 Kevin White, UChicago 7dbf8f8f731d3cc8c6606a304bdbaebb SRA:SRR6213700 https://www.encodeproject.org/files/ENCFF463YWP/@@download/ENCFF463YWP.fastq.gz Illumina HiSeq 2500 /files/ENCFF256EJW/ released low read depth, missing genetic modification characterization ENCFF198ANV fastq reads ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 1 50 single-ended 1019820115 Kevin White, UChicago 5d9b3073c9c8598c4f4af5d692403266 SRA:SRR6213699 https://www.encodeproject.org/files/ENCFF198ANV/@@download/ENCFF198ANV.fastq.gz Illumina HiSeq 2500 /files/ENCFF256EJW/ released low read depth, missing genetic modification characterization ENCFF946OHC bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF463YWP, ENCFF807MUK 1560076585 ENCODE Processing Pipeline fbc4716f63bde1393de28cb4330a051f https://www.encodeproject.org/files/ENCFF946OHC/@@download/ENCFF946OHC.bam hg19 released low read depth, missing genetic modification characterization ENCFF873PTI bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 50 ENCFF198ANV, ENCFF807MUK 905670424 ENCODE Processing Pipeline 8a0c662a10848120be38bf6e578eada3 https://www.encodeproject.org/files/ENCFF873PTI/@@download/ENCFF873PTI.bam hg19 released low read depth, missing genetic modification characterization ENCFF376JVU bigWig signal p-value ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF309VRW, ENCFF946OHC 610100735 ENCODE Processing Pipeline 1912d5585bbdb65f0ee3b9c3fc563459 https://www.encodeproject.org/files/ENCFF376JVU/@@download/ENCFF376JVU.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF966GDM bigWig signal p-value ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF309VRW, ENCFF873PTI 633347282 ENCODE Processing Pipeline b868bd459c7a36cccc8bccf11240d9cb https://www.encodeproject.org/files/ENCFF966GDM/@@download/ENCFF966GDM.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF530DKN bigWig signal p-value ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF309VRW, ENCFF873PTI, ENCFF946OHC 792628474 ENCODE Processing Pipeline 696b11fa59f162dc1a4992ddc37c86b9 https://www.encodeproject.org/files/ENCFF530DKN/@@download/ENCFF530DKN.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF214LVB bigWig fold change over control ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF309VRW, ENCFF946OHC 759272848 ENCODE Processing Pipeline 0d03f190501806e061c00b8946df2419 https://www.encodeproject.org/files/ENCFF214LVB/@@download/ENCFF214LVB.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF466XKP bigWig fold change over control ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF309VRW, ENCFF873PTI 536193153 ENCODE Processing Pipeline 9522592fe6d1f0295e0902d855230f9b https://www.encodeproject.org/files/ENCFF466XKP/@@download/ENCFF466XKP.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF708HXY bigWig fold change over control ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF309VRW, ENCFF873PTI, ENCFF946OHC 1000278606 ENCODE Processing Pipeline 581b58387be356ad980877478f49adbe https://www.encodeproject.org/files/ENCFF708HXY/@@download/ENCFF708HXY.bigWig hg19 released low read depth, missing genetic modification characterization ENCFF927BKR bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF309VRW, ENCFF946OHC 6818553 ENCODE Processing Pipeline 06eb63fe8f8590dcd4c5de58d66e4e82 https://www.encodeproject.org/files/ENCFF927BKR/@@download/ENCFF927BKR.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF394UVI bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF309VRW, ENCFF873PTI 5923748 ENCODE Processing Pipeline 1822a58d0ef42183111e24fd35602b53 https://www.encodeproject.org/files/ENCFF394UVI/@@download/ENCFF394UVI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF964XJN bigBed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF927BKR 13293191 ENCODE Processing Pipeline 7a3f33864b62a48be9d6686efc575b70 https://www.encodeproject.org/files/ENCFF964XJN/@@download/ENCFF964XJN.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF599OQO bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF309VRW, ENCFF873PTI, ENCFF946OHC 3675978 ENCODE Processing Pipeline 2dad53d4314b28fa98e68ca7fa0d594e https://www.encodeproject.org/files/ENCFF599OQO/@@download/ENCFF599OQO.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF609GHM bigBed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF599OQO 7123027 ENCODE Processing Pipeline f211d57f5423e76628c3988c6ce2bfc8 https://www.encodeproject.org/files/ENCFF609GHM/@@download/ENCFF609GHM.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF230JZS bigBed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF394UVI 13272338 ENCODE Processing Pipeline 9ac43af546b121a11896541ca069ffa7 https://www.encodeproject.org/files/ENCFF230JZS/@@download/ENCFF230JZS.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF439TAT bam unfiltered alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 50 ENCFF198ANV, ENCFF643CGH 1151277773 ENCODE Processing Pipeline 0c2971dc591d795feff7b004a950894e https://www.encodeproject.org/files/ENCFF439TAT/@@download/ENCFF439TAT.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF121PXE bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 50 ENCFF198ANV, ENCFF643CGH 905373961 ENCODE Processing Pipeline c47621804ef5a762624471228e84baba https://www.encodeproject.org/files/ENCFF121PXE/@@download/ENCFF121PXE.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF058DXE bam unfiltered alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF463YWP, ENCFF643CGH 1999995164 ENCODE Processing Pipeline 82d98731f75c23883e80b1ff2cebd374 https://www.encodeproject.org/files/ENCFF058DXE/@@download/ENCFF058DXE.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF526VWA bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF463YWP, ENCFF643CGH 1559939865 ENCODE Processing Pipeline 96b65ae2fe194f6c5a2fcc94c34d0d00 https://www.encodeproject.org/files/ENCFF526VWA/@@download/ENCFF526VWA.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF453LHZ bigWig fold change over control ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF526VWA, ENCFF754VNY 765026546 ENCODE Processing Pipeline f651706ac8d1111f0ad55278c4384f74 https://www.encodeproject.org/files/ENCFF453LHZ/@@download/ENCFF453LHZ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF345WBX bigBed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF461EVQ 7118306 ENCODE Processing Pipeline d7db1a47790afc93091102f78c048753 https://www.encodeproject.org/files/ENCFF345WBX/@@download/ENCFF345WBX.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF080PKN bigWig fold change over control ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF121PXE, ENCFF526VWA, ENCFF754VNY 1002328522 ENCODE Processing Pipeline c804e2f8d1e2d87929a9600f638008c0 https://www.encodeproject.org/files/ENCFF080PKN/@@download/ENCFF080PKN.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF149OQM bigWig signal p-value ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF526VWA, ENCFF754VNY 668190743 ENCODE Processing Pipeline 6409a63329b90ba35942f9075f43895b https://www.encodeproject.org/files/ENCFF149OQM/@@download/ENCFF149OQM.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF191GIQ bigWig signal p-value ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF121PXE, ENCFF754VNY 546562987 ENCODE Processing Pipeline a923d28be7d1794900aed87acd6f0823 https://www.encodeproject.org/files/ENCFF191GIQ/@@download/ENCFF191GIQ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF398JDC bigWig signal p-value ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF121PXE, ENCFF526VWA, ENCFF754VNY 794753334 ENCODE Processing Pipeline 363442d693f3db8bb84b6ef2aabd364f https://www.encodeproject.org/files/ENCFF398JDC/@@download/ENCFF398JDC.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF443QKZ bigWig fold change over control ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF121PXE, ENCFF754VNY 539128379 ENCODE Processing Pipeline f7ed17de0ae017005670c6752a5190a9 https://www.encodeproject.org/files/ENCFF443QKZ/@@download/ENCFF443QKZ.bigWig GRCh38 released low read depth, missing genetic modification characterization ENCFF654IHK bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF526VWA, ENCFF754VNY 6638831 ENCODE Processing Pipeline e00fd9633cf15a93434da20736f30212 https://www.encodeproject.org/files/ENCFF654IHK/@@download/ENCFF654IHK.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF356OGZ bigBed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF654IHK 13294161 ENCODE Processing Pipeline b05e623753154c8b8d6e8be3e40007a5 https://www.encodeproject.org/files/ENCFF356OGZ/@@download/ENCFF356OGZ.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF751QEY bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF121PXE, ENCFF754VNY 5721348 ENCODE Processing Pipeline 33dde549478f136c32241d32b88f0b70 https://www.encodeproject.org/files/ENCFF751QEY/@@download/ENCFF751QEY.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF461EVQ bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF121PXE, ENCFF526VWA, ENCFF754VNY 3627282 ENCODE Processing Pipeline c23ca12da91c5ac88a9f6f7acdc19d21 https://www.encodeproject.org/files/ENCFF461EVQ/@@download/ENCFF461EVQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF262IHS bigBed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 ENCFF751QEY 13242362 ENCODE Processing Pipeline de0f3a14cd04d12702c805c01d8b75a3 https://www.encodeproject.org/files/ENCFF262IHS/@@download/ENCFF262IHS.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF818TQX bed narrowPeak conservative idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF419RSJ, ENCFF461EVQ, ENCFF654IHK, ENCFF751QEY 247100 ENCODE Processing Pipeline 53da4203c74b4c161184d79532135bec https://www.encodeproject.org/files/ENCFF818TQX/@@download/ENCFF818TQX.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF462MYY bigBed narrowPeak optimal idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF998CZO 561578 ENCODE Processing Pipeline 83c337ddb485bd9f55490b05a981d3cb https://www.encodeproject.org/files/ENCFF462MYY/@@download/ENCFF462MYY.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF894GTA bigBed narrowPeak conservative idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF818TQX 549785 ENCODE Processing Pipeline ed2c96c1fc2cc12930b65fe3ba10136c https://www.encodeproject.org/files/ENCFF894GTA/@@download/ENCFF894GTA.bigBed GRCh38 released low read depth, missing genetic modification characterization ENCFF998CZO bed narrowPeak optimal idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF419RSJ, ENCFF461EVQ, ENCFF654IHK, ENCFF751QEY 254670 ENCODE Processing Pipeline 94b565ffb2fb26b0290ddeebb4a495eb https://www.encodeproject.org/files/ENCFF998CZO/@@download/ENCFF998CZO.bed.gz GRCh38 released low read depth, missing genetic modification characterization ENCFF702WUG bigBed narrowPeak conservative idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF252VKD 396762 ENCODE Processing Pipeline 16435c7a5e1d8ba2cd4dcc66de310677 https://www.encodeproject.org/files/ENCFF702WUG/@@download/ENCFF702WUG.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF252VKD bed narrowPeak conservative idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF001TDO, ENCFF394UVI, ENCFF599OQO, ENCFF927BKR 209694 ENCODE Processing Pipeline 5a80b8ea157a926cf574de8946bfbfd8 https://www.encodeproject.org/files/ENCFF252VKD/@@download/ENCFF252VKD.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF331KNS bed narrowPeak optimal idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF001TDO, ENCFF394UVI, ENCFF599OQO, ENCFF927BKR 215108 ENCODE Processing Pipeline c2402f7169a6f5a07c8fb0d492661e49 https://www.encodeproject.org/files/ENCFF331KNS/@@download/ENCFF331KNS.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF197YYJ bigBed narrowPeak optimal idr thresholded peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2, 3 ENCFF331KNS 404082 ENCODE Processing Pipeline 1b01c2a035ecfa9ba30c3723aafd1900 https://www.encodeproject.org/files/ENCFF197YYJ/@@download/ENCFF197YYJ.bigBed hg19 released low read depth, missing genetic modification characterization ENCFF571RCF bam unfiltered alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 50 ENCFF076JZZ, ENCFF717YOH, ENCFF807MUK 1660634904 ENCODE Processing Pipeline e0bbed42bfde368421d0b6abf87ca884 https://www.encodeproject.org/files/ENCFF571RCF/@@download/ENCFF571RCF.bam hg19 released missing genetic modification characterization ENCFF750RZH bam unfiltered alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 50 ENCFF019ZET, ENCFF748PBU, ENCFF807MUK 1176312851 ENCODE Processing Pipeline b1fe5e2109234d81cc69381b310a1ad5 https://www.encodeproject.org/files/ENCFF750RZH/@@download/ENCFF750RZH.bam hg19 released missing genetic modification characterization ENCFF748PBU fastq reads ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 417614987 Kevin White, UChicago a03611adbe6e8b71102ab887e314dc89 SRA:SRR6214111 https://www.encodeproject.org/files/ENCFF748PBU/@@download/ENCFF748PBU.fastq.gz Illumina HiSeq 2000 /files/ENCFF485ZYJ/, /files/ENCFF679OFG/ released missing genetic modification characterization ENCFF717YOH fastq reads ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 606808091 Kevin White, UChicago 7dfc200f365e77d994571a05d3d7e258 SRA:SRR6214109 https://www.encodeproject.org/files/ENCFF717YOH/@@download/ENCFF717YOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF485ZYJ/, /files/ENCFF679OFG/ released missing genetic modification characterization ENCFF076JZZ fastq reads ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 898735862 Kevin White, UChicago 32f8f9ee98fdc90f587bfd1df57ff8c6 SRA:SRR6214110 https://www.encodeproject.org/files/ENCFF076JZZ/@@download/ENCFF076JZZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF485ZYJ/, /files/ENCFF679OFG/ released missing genetic modification characterization ENCFF019ZET fastq reads ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 643514711 Kevin White, UChicago 576b781012028748726e4d3a55bd4a8b SRA:SRR6214112 https://www.encodeproject.org/files/ENCFF019ZET/@@download/ENCFF019ZET.fastq.gz Illumina HiSeq 2500 /files/ENCFF485ZYJ/, /files/ENCFF679OFG/ released missing genetic modification characterization ENCFF356LRY bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 50 ENCFF076JZZ, ENCFF717YOH, ENCFF807MUK 1322244002 ENCODE Processing Pipeline b756590c127e1c790ba9201e2e4f294a https://www.encodeproject.org/files/ENCFF356LRY/@@download/ENCFF356LRY.bam hg19 released missing genetic modification characterization ENCFF284BJY bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 50 ENCFF019ZET, ENCFF748PBU, ENCFF807MUK 934467817 ENCODE Processing Pipeline 05cbf4958b1a804f78bdcf74bb33d070 https://www.encodeproject.org/files/ENCFF284BJY/@@download/ENCFF284BJY.bam hg19 released missing genetic modification characterization ENCFF952IWN bigWig signal p-value ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF139MVO, ENCFF284BJY 691843205 ENCODE Processing Pipeline a45977a3edfdea9eb50a113d29cf3645 https://www.encodeproject.org/files/ENCFF952IWN/@@download/ENCFF952IWN.bigWig hg19 released missing genetic modification characterization ENCFF855HVC bigWig signal p-value ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF139MVO, ENCFF356LRY 691020411 ENCODE Processing Pipeline ad6036c0919e98067f3c6b866a98e2d8 https://www.encodeproject.org/files/ENCFF855HVC/@@download/ENCFF855HVC.bigWig hg19 released missing genetic modification characterization ENCFF696IQC bigWig signal p-value ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF139MVO, ENCFF284BJY, ENCFF356LRY 953627406 ENCODE Processing Pipeline 48af401d4073821ae45a233ae9289df4 https://www.encodeproject.org/files/ENCFF696IQC/@@download/ENCFF696IQC.bigWig hg19 released missing genetic modification characterization ENCFF611SXM bigWig fold change over control ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF139MVO, ENCFF284BJY 594583195 ENCODE Processing Pipeline 88aca38ea7b19b30fc1ed77c83aa2878 https://www.encodeproject.org/files/ENCFF611SXM/@@download/ENCFF611SXM.bigWig hg19 released missing genetic modification characterization ENCFF984LVW bigWig fold change over control ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF139MVO, ENCFF356LRY 733369353 ENCODE Processing Pipeline 979b864879a485d1ab6680dd7bed5107 https://www.encodeproject.org/files/ENCFF984LVW/@@download/ENCFF984LVW.bigWig hg19 released missing genetic modification characterization ENCFF621LZE bigWig fold change over control ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF139MVO, ENCFF284BJY, ENCFF356LRY 1019393271 ENCODE Processing Pipeline 2a11a9b28f6b35644ff9c2fa8ca7fe3f https://www.encodeproject.org/files/ENCFF621LZE/@@download/ENCFF621LZE.bigWig hg19 released missing genetic modification characterization ENCFF903FBL bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF139MVO, ENCFF284BJY, ENCFF356LRY 7079020 ENCODE Processing Pipeline 5adc0944ca4d0fb5a20e8c6463262515 https://www.encodeproject.org/files/ENCFF903FBL/@@download/ENCFF903FBL.bed.gz hg19 released missing genetic modification characterization ENCFF233FOV bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF139MVO, ENCFF284BJY 6429901 ENCODE Processing Pipeline 17babe61f65b3c87ed973fd946ef985d https://www.encodeproject.org/files/ENCFF233FOV/@@download/ENCFF233FOV.bed.gz hg19 released missing genetic modification characterization ENCFF188UYW bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF139MVO, ENCFF356LRY 6563813 ENCODE Processing Pipeline 152f4cc7ab9826b2bd18f6611a240141 https://www.encodeproject.org/files/ENCFF188UYW/@@download/ENCFF188UYW.bed.gz hg19 released missing genetic modification characterization ENCFF150LYY bigBed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF233FOV 13146915 ENCODE Processing Pipeline 1bcf8747463f5a11a31c3a88544c8213 https://www.encodeproject.org/files/ENCFF150LYY/@@download/ENCFF150LYY.bigBed hg19 released missing genetic modification characterization ENCFF191COH bigBed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF188UYW 13262167 ENCODE Processing Pipeline ac75d18f7ed4bf851b3982bdb5576ffd https://www.encodeproject.org/files/ENCFF191COH/@@download/ENCFF191COH.bigBed hg19 released missing genetic modification characterization ENCFF180UUQ bigBed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF903FBL 13160410 ENCODE Processing Pipeline 8dbd858997fe99b6937eb233bbdd1c04 https://www.encodeproject.org/files/ENCFF180UUQ/@@download/ENCFF180UUQ.bigBed hg19 released missing genetic modification characterization ENCFF802MSR bam unfiltered alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 50 ENCFF019ZET, ENCFF643CGH, ENCFF748PBU 1180604893 ENCODE Processing Pipeline f75263b2ce29c0e081d3232307e86317 https://www.encodeproject.org/files/ENCFF802MSR/@@download/ENCFF802MSR.bam GRCh38 released missing genetic modification characterization ENCFF698BAV bam unfiltered alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 50 ENCFF076JZZ, ENCFF643CGH, ENCFF717YOH 1666992494 ENCODE Processing Pipeline ce4fd9e7a612c22ac296bcaab6864a82 https://www.encodeproject.org/files/ENCFF698BAV/@@download/ENCFF698BAV.bam GRCh38 released missing genetic modification characterization ENCFF910XWG bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 50 ENCFF019ZET, ENCFF643CGH, ENCFF748PBU 934006226 ENCODE Processing Pipeline 63c6ba7d00322521c73826c117813f9a https://www.encodeproject.org/files/ENCFF910XWG/@@download/ENCFF910XWG.bam GRCh38 released missing genetic modification characterization ENCFF338MSY bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 50 ENCFF076JZZ, ENCFF643CGH, ENCFF717YOH 1321747395 ENCODE Processing Pipeline 5adc37cd22a3fc0802cc09be03eac88a https://www.encodeproject.org/files/ENCFF338MSY/@@download/ENCFF338MSY.bam GRCh38 released missing genetic modification characterization ENCFF916DNT bigWig signal p-value ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF338MSY, ENCFF679QYP, ENCFF910XWG 958356471 ENCODE Processing Pipeline 08841bd787508e99b48d4cf27eda1c71 https://www.encodeproject.org/files/ENCFF916DNT/@@download/ENCFF916DNT.bigWig GRCh38 released missing genetic modification characterization ENCFF536STK bigWig signal p-value ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF679QYP, ENCFF910XWG 636077449 ENCODE Processing Pipeline 8b56aba495e3376f768ca14142a8d379 https://www.encodeproject.org/files/ENCFF536STK/@@download/ENCFF536STK.bigWig GRCh38 released missing genetic modification characterization ENCFF362FYD bigWig signal p-value ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF338MSY, ENCFF679QYP 819656387 ENCODE Processing Pipeline 57e631dd9f3428a874ecf3bf0f6fe97c https://www.encodeproject.org/files/ENCFF362FYD/@@download/ENCFF362FYD.bigWig GRCh38 released missing genetic modification characterization ENCFF327UMS bigWig fold change over control ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF679QYP, ENCFF910XWG 594918502 ENCODE Processing Pipeline 90915ac5a28a7407f48359a5d8ff2491 https://www.encodeproject.org/files/ENCFF327UMS/@@download/ENCFF327UMS.bigWig GRCh38 released missing genetic modification characterization ENCFF074TUY bigWig fold change over control ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF338MSY, ENCFF679QYP 719037437 ENCODE Processing Pipeline cadc41b3c60d9fe0f8b793e06ec42519 https://www.encodeproject.org/files/ENCFF074TUY/@@download/ENCFF074TUY.bigWig GRCh38 released missing genetic modification characterization ENCFF415NMY bigWig fold change over control ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF338MSY, ENCFF679QYP, ENCFF910XWG 1043444283 ENCODE Processing Pipeline a00f72ec6c5a86976ffa71957f9f2942 https://www.encodeproject.org/files/ENCFF415NMY/@@download/ENCFF415NMY.bigWig GRCh38 released missing genetic modification characterization ENCFF955QYT bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF338MSY, ENCFF679QYP 6308309 ENCODE Processing Pipeline c8db82c453a30d55f593fb78cda1394b https://www.encodeproject.org/files/ENCFF955QYT/@@download/ENCFF955QYT.bed.gz GRCh38 released missing genetic modification characterization ENCFF327IQQ bigBed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF955QYT 13271535 ENCODE Processing Pipeline 05868d5c008b79d8c6afa63aa67b6423 https://www.encodeproject.org/files/ENCFF327IQQ/@@download/ENCFF327IQQ.bigBed GRCh38 released missing genetic modification characterization ENCFF106DEP bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF338MSY, ENCFF679QYP, ENCFF910XWG 6927149 ENCODE Processing Pipeline 3f5756c8c7486322b5d5b7c5ac9f24d5 https://www.encodeproject.org/files/ENCFF106DEP/@@download/ENCFF106DEP.bed.gz GRCh38 released missing genetic modification characterization ENCFF018SYW bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF679QYP, ENCFF910XWG 6237873 ENCODE Processing Pipeline c2d4bae5eb21f133e94200a351d4fd6e https://www.encodeproject.org/files/ENCFF018SYW/@@download/ENCFF018SYW.bed.gz GRCh38 released missing genetic modification characterization ENCFF096SML bigBed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF106DEP 13169338 ENCODE Processing Pipeline 4ee5bfe0bab4395c0ea120de88b1065d https://www.encodeproject.org/files/ENCFF096SML/@@download/ENCFF096SML.bigBed GRCh38 released missing genetic modification characterization ENCFF559RZI bigBed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF018SYW 13146649 ENCODE Processing Pipeline 535149d810673eb030c0965d5af7d9a1 https://www.encodeproject.org/files/ENCFF559RZI/@@download/ENCFF559RZI.bigBed GRCh38 released missing genetic modification characterization ENCFF161ZTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF301FKQ 362524 ENCODE Processing Pipeline b796fb81ca1b9c92f5b1ed5400a9564e https://www.encodeproject.org/files/ENCFF161ZTQ/@@download/ENCFF161ZTQ.bigBed GRCh38 released missing genetic modification characterization ENCFF301FKQ bed narrowPeak optimal idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF018SYW, ENCFF106DEP, ENCFF419RSJ, ENCFF955QYT 149072 ENCODE Processing Pipeline bb60d5ef02304ef3e26cf1135dd4057c https://www.encodeproject.org/files/ENCFF301FKQ/@@download/ENCFF301FKQ.bed.gz GRCh38 released missing genetic modification characterization ENCFF350TYH bed narrowPeak conservative idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF018SYW, ENCFF106DEP, ENCFF419RSJ, ENCFF955QYT 142809 ENCODE Processing Pipeline d92a22a11cd26a71da777be1ddd7815a https://www.encodeproject.org/files/ENCFF350TYH/@@download/ENCFF350TYH.bed.gz GRCh38 released missing genetic modification characterization ENCFF502MAP bigBed narrowPeak conservative idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF350TYH 349734 ENCODE Processing Pipeline 36681244f0416ca3aa5df4500cf9811c https://www.encodeproject.org/files/ENCFF502MAP/@@download/ENCFF502MAP.bigBed GRCh38 released missing genetic modification characterization ENCFF669BPX bed narrowPeak conservative idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF188UYW, ENCFF233FOV, ENCFF903FBL 117901 ENCODE Processing Pipeline dac6a1df1646df37753b3993bb9c83f3 https://www.encodeproject.org/files/ENCFF669BPX/@@download/ENCFF669BPX.bed.gz hg19 released missing genetic modification characterization ENCFF810USN bigBed narrowPeak conservative idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF669BPX 257336 ENCODE Processing Pipeline f43e373059100002fe006c5b75d4f2c4 https://www.encodeproject.org/files/ENCFF810USN/@@download/ENCFF810USN.bigBed hg19 released missing genetic modification characterization ENCFF898FAQ bed narrowPeak optimal idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF188UYW, ENCFF233FOV, ENCFF903FBL 124815 ENCODE Processing Pipeline e289ccf3c9b78c0755899343b35f0f61 https://www.encodeproject.org/files/ENCFF898FAQ/@@download/ENCFF898FAQ.bed.gz hg19 released missing genetic modification characterization ENCFF023IJE bigBed narrowPeak optimal idr thresholded peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF898FAQ 267561 ENCODE Processing Pipeline 3a61fc48790f5ebaeece8f445412b7ad https://www.encodeproject.org/files/ENCFF023IJE/@@download/ENCFF023IJE.bigBed hg19 released missing genetic modification characterization ENCFF912CWH bam unfiltered alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 100 ENCFF655ZKU, ENCFF807MUK, ENCFF998ZXC 6537647381 ENCODE Processing Pipeline 46178f86abec130eb16690cbf41d3b81 https://www.encodeproject.org/files/ENCFF912CWH/@@download/ENCFF912CWH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF104CPV bam unfiltered alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 100 ENCFF700HES, ENCFF766JQJ, ENCFF807MUK 5584712622 ENCODE Processing Pipeline 1fe11c1733528209b39cfdce953269f4 https://www.encodeproject.org/files/ENCFF104CPV/@@download/ENCFF104CPV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF766JQJ fastq reads ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 2 ENCFF700HES 2582410958 Michael Snyder, Stanford 7c99d1867fc2cd03f5b08c4f49e5a830 SRA:SRR6214314 https://www.encodeproject.org/files/ENCFF766JQJ/@@download/ENCFF766JQJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF700HES fastq reads ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 1 100 paired-ended 1 ENCFF766JQJ 2544693697 Michael Snyder, Stanford 447ad5d05f3e787bb384b9405c35edb4 SRA:SRR6214314 https://www.encodeproject.org/files/ENCFF700HES/@@download/ENCFF700HES.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF655ZKU fastq reads ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 1 ENCFF998ZXC 2939552480 Michael Snyder, Stanford f9776200f132a3340e3697021b7ca31a SRA:SRR6214313 https://www.encodeproject.org/files/ENCFF655ZKU/@@download/ENCFF655ZKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF998ZXC fastq reads ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 1 100 paired-ended 2 ENCFF655ZKU 2988543204 Michael Snyder, Stanford a9a3599fcde64c92d4421357a147ddfa SRA:SRR6214313 https://www.encodeproject.org/files/ENCFF998ZXC/@@download/ENCFF998ZXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF600JYB bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 100 ENCFF700HES, ENCFF766JQJ, ENCFF807MUK 4326883005 ENCODE Processing Pipeline de16793e05358b5d73382c39a1f8a386 https://www.encodeproject.org/files/ENCFF600JYB/@@download/ENCFF600JYB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF257CJR bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 100 ENCFF655ZKU, ENCFF807MUK, ENCFF998ZXC 5457190557 ENCODE Processing Pipeline 022a95b4408885460df1fc62289c9712 https://www.encodeproject.org/files/ENCFF257CJR/@@download/ENCFF257CJR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF814BHO bigWig signal p-value ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF257CJR, ENCFF449NNE 1133405677 ENCODE Processing Pipeline 2568e79d7a42eab4189da36ae06d7474 https://www.encodeproject.org/files/ENCFF814BHO/@@download/ENCFF814BHO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF160VKI bigWig signal p-value ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF600JYB, ENCFF999EQI 985996793 ENCODE Processing Pipeline bca78282067af60b643ed465b68ba42f https://www.encodeproject.org/files/ENCFF160VKI/@@download/ENCFF160VKI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF189IAC bigWig signal p-value ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF257CJR, ENCFF449NNE, ENCFF600JYB, ENCFF999EQI 1831975278 ENCODE Processing Pipeline 6b3398ae3997a28d1f6243f6e2440ca0 https://www.encodeproject.org/files/ENCFF189IAC/@@download/ENCFF189IAC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF760OAU bigWig fold change over control ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF257CJR, ENCFF449NNE 1334579764 ENCODE Processing Pipeline 8e1677879e5df9292d24b4d6872ccbc2 https://www.encodeproject.org/files/ENCFF760OAU/@@download/ENCFF760OAU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF547MBX bigWig fold change over control ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF600JYB, ENCFF999EQI 1040577347 ENCODE Processing Pipeline a4bac3f65909f699362f88431406bd00 https://www.encodeproject.org/files/ENCFF547MBX/@@download/ENCFF547MBX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF119VWG bigWig fold change over control ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF257CJR, ENCFF449NNE, ENCFF600JYB, ENCFF999EQI 2149858042 ENCODE Processing Pipeline c3972602b7c2cab3bd3cdc9b927b4595 https://www.encodeproject.org/files/ENCFF119VWG/@@download/ENCFF119VWG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF663GZD bigBed narrowPeak conservative idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF465OFU 60267 ENCODE Processing Pipeline 33496aff564adaa83db906b73fad067d https://www.encodeproject.org/files/ENCFF663GZD/@@download/ENCFF663GZD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF595JOL bigBed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF017ACO 11372467 ENCODE Processing Pipeline 316b4ceea762f0b874b795e8792627f3 https://www.encodeproject.org/files/ENCFF595JOL/@@download/ENCFF595JOL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF017ACO bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF257CJR, ENCFF449NNE 6390407 ENCODE Processing Pipeline 9fed11b9e67d4c9e9b9cc10c2e793218 https://www.encodeproject.org/files/ENCFF017ACO/@@download/ENCFF017ACO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF627MTB bigBed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF428ZAR 11315525 ENCODE Processing Pipeline 63d928f684c58a3d9dac379a96f21d71 https://www.encodeproject.org/files/ENCFF627MTB/@@download/ENCFF627MTB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF668CRG bigBed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF476ETP 11374973 ENCODE Processing Pipeline ad3c5ad801c82a2a64ff4ef3e47655c0 https://www.encodeproject.org/files/ENCFF668CRG/@@download/ENCFF668CRG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF465OFU bed narrowPeak conservative idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF017ACO, ENCFF428ZAR, ENCFF476ETP 5366 ENCODE Processing Pipeline 7513c500abf9b5b4ee4a3204127dd80f https://www.encodeproject.org/files/ENCFF465OFU/@@download/ENCFF465OFU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF476ETP bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF257CJR, ENCFF449NNE, ENCFF600JYB, ENCFF999EQI 7080946 ENCODE Processing Pipeline 94a0e17187415f2d234b20dbbc39615a https://www.encodeproject.org/files/ENCFF476ETP/@@download/ENCFF476ETP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF428ZAR bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF600JYB, ENCFF999EQI 5809777 ENCODE Processing Pipeline e7e31fe469c8d81ed480abecd923c1b5 https://www.encodeproject.org/files/ENCFF428ZAR/@@download/ENCFF428ZAR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF950HDR bed narrowPeak optimal idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF001TDO, ENCFF017ACO, ENCFF428ZAR, ENCFF476ETP 40652 ENCODE Processing Pipeline 032254b87245bb0691cb552e012826b6 https://www.encodeproject.org/files/ENCFF950HDR/@@download/ENCFF950HDR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF586KFO bigBed narrowPeak optimal idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF950HDR 118245 ENCODE Processing Pipeline 7cfc913111bcfbb1a7a6ed1e867811d8 https://www.encodeproject.org/files/ENCFF586KFO/@@download/ENCFF586KFO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF988FYL bam unfiltered alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 100 ENCFF643CGH, ENCFF700HES, ENCFF766JQJ 5593951056 ENCODE Processing Pipeline cb5c216f313dc2c67a3c39e9f40c7e05 https://www.encodeproject.org/files/ENCFF988FYL/@@download/ENCFF988FYL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF943LYC bam unfiltered alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 100 ENCFF643CGH, ENCFF655ZKU, ENCFF998ZXC 6551653148 ENCODE Processing Pipeline f263eace7e2b4d9d82a4fee7ab063428 https://www.encodeproject.org/files/ENCFF943LYC/@@download/ENCFF943LYC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF844MJH bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 100 ENCFF643CGH, ENCFF700HES, ENCFF766JQJ 4337313668 ENCODE Processing Pipeline 93525ccf814ca279ecc14a0b3bace6c6 https://www.encodeproject.org/files/ENCFF844MJH/@@download/ENCFF844MJH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF044TWJ bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 100 ENCFF643CGH, ENCFF655ZKU, ENCFF998ZXC 5475438576 ENCODE Processing Pipeline 42227a524a95d5045766fc1fa39fd4fe https://www.encodeproject.org/files/ENCFF044TWJ/@@download/ENCFF044TWJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF792GGD bigWig signal p-value ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF044TWJ, ENCFF190EPQ 1309446837 ENCODE Processing Pipeline 72239d78d16dffdc4b68b8a06197dd41 https://www.encodeproject.org/files/ENCFF792GGD/@@download/ENCFF792GGD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF626NRC bigWig signal p-value ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF844MJH, ENCFF950AXC 912982873 ENCODE Processing Pipeline ae8e2fde0ccc67f3358ed81fdf28cbbe https://www.encodeproject.org/files/ENCFF626NRC/@@download/ENCFF626NRC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF840BME bigWig signal p-value ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF044TWJ, ENCFF190EPQ, ENCFF844MJH, ENCFF950AXC 2105480483 ENCODE Processing Pipeline 99d993f9f1ed9d20296f0d610225716b https://www.encodeproject.org/files/ENCFF840BME/@@download/ENCFF840BME.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF339RRU bigWig fold change over control ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF044TWJ, ENCFF190EPQ 1344316011 ENCODE Processing Pipeline 660b0c0499d3968e96460bc888fb080f https://www.encodeproject.org/files/ENCFF339RRU/@@download/ENCFF339RRU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF389KFX bigWig fold change over control ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF844MJH, ENCFF950AXC 1068937657 ENCODE Processing Pipeline afce81a76278cc0509cce3f226b13422 https://www.encodeproject.org/files/ENCFF389KFX/@@download/ENCFF389KFX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF782TNO bigWig fold change over control ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF044TWJ, ENCFF190EPQ, ENCFF844MJH, ENCFF950AXC 2138867489 ENCODE Processing Pipeline c0009d2e6c921136eee2941424a89f48 https://www.encodeproject.org/files/ENCFF782TNO/@@download/ENCFF782TNO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF503CED bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF844MJH, ENCFF950AXC 5595480 ENCODE Processing Pipeline 34832d4ccbf88fcbf491564aaf5250b2 https://www.encodeproject.org/files/ENCFF503CED/@@download/ENCFF503CED.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF922CJA bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF044TWJ, ENCFF190EPQ 6235558 ENCODE Processing Pipeline 17824be73a254f5ba96508bd1f3e64ce https://www.encodeproject.org/files/ENCFF922CJA/@@download/ENCFF922CJA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF389EJE bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF044TWJ, ENCFF190EPQ, ENCFF844MJH, ENCFF950AXC 7013319 ENCODE Processing Pipeline f703934928f5f187fe4f16bf83d84317 https://www.encodeproject.org/files/ENCFF389EJE/@@download/ENCFF389EJE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF351IGY bigBed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF922CJA 11375977 ENCODE Processing Pipeline 4189e950bc19cfc683467628224f083d https://www.encodeproject.org/files/ENCFF351IGY/@@download/ENCFF351IGY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF653FZV bigBed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF503CED 11296129 ENCODE Processing Pipeline e3f247d5d56c86f87352e7e92ed6a447 https://www.encodeproject.org/files/ENCFF653FZV/@@download/ENCFF653FZV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF710OAN bigBed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF389EJE 11400054 ENCODE Processing Pipeline 234c276cce8de82061cb90dba272c53b https://www.encodeproject.org/files/ENCFF710OAN/@@download/ENCFF710OAN.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF902IRY bed narrowPeak conservative idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF389EJE, ENCFF419RSJ, ENCFF503CED, ENCFF922CJA 7529 ENCODE Processing Pipeline 56f406dc0c23200fe975872a106c0eaf https://www.encodeproject.org/files/ENCFF902IRY/@@download/ENCFF902IRY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF263VMT bigBed narrowPeak optimal idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF906FVB 150256 ENCODE Processing Pipeline 6397026d4faee56af7db91d731d8e8ca https://www.encodeproject.org/files/ENCFF263VMT/@@download/ENCFF263VMT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF906FVB bed narrowPeak optimal idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF389EJE, ENCFF419RSJ, ENCFF503CED, ENCFF922CJA 45049 ENCODE Processing Pipeline 9e5c3e723f82f10ab01212a64f58f0bf https://www.encodeproject.org/files/ENCFF906FVB/@@download/ENCFF906FVB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF850GXY bigBed narrowPeak conservative idr thresholded peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1, 2 ENCFF902IRY 83903 ENCODE Processing Pipeline dbf1f9235428fd939868bb50fb5d36aa https://www.encodeproject.org/files/ENCFF850GXY/@@download/ENCFF850GXY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF147LKM fastq reads ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF319KBV 2405321992 Michael Snyder, Stanford f071b58aafd559b4cc422822fe5e7ddd SRA:SRR5111410 https://www.encodeproject.org/files/ENCFF147LKM/@@download/ENCFF147LKM.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF945NKO fastq reads ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF282WYC 2896009476 Michael Snyder, Stanford c6a4143eef4e10e4ddc36d6cf2223764 SRA:SRR5111411 https://www.encodeproject.org/files/ENCFF945NKO/@@download/ENCFF945NKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF282WYC fastq reads ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF945NKO 2875169553 Michael Snyder, Stanford 7b53ef29c8fc72093315d7174860079c SRA:SRR5111411 https://www.encodeproject.org/files/ENCFF282WYC/@@download/ENCFF282WYC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF319KBV fastq reads ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF147LKM 2427101164 Michael Snyder, Stanford 822aed71882d4ff018afa0079ac1c47c SRA:SRR5111410 https://www.encodeproject.org/files/ENCFF319KBV/@@download/ENCFF319KBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF606ORD bam unfiltered alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147LKM, ENCFF319KBV, ENCFF643CGH 5384743630 ENCODE Processing Pipeline 6aa60043531fca8b0a27cef8938bb26c https://www.encodeproject.org/files/ENCFF606ORD/@@download/ENCFF606ORD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF474HBL bam unfiltered alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147LKM, ENCFF319KBV, ENCFF807MUK 5377537970 ENCODE Processing Pipeline 36aa1941336ebb6f07ad982362c45a87 https://www.encodeproject.org/files/ENCFF474HBL/@@download/ENCFF474HBL.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF193WUI bam unfiltered alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF282WYC, ENCFF643CGH, ENCFF945NKO 6309341005 ENCODE Processing Pipeline 8cf375ca96e9c87821060a4e25db5e36 https://www.encodeproject.org/files/ENCFF193WUI/@@download/ENCFF193WUI.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF444DFU bam unfiltered alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF282WYC, ENCFF807MUK, ENCFF945NKO 6302694691 ENCODE Processing Pipeline 9bf87420a415affbe0b8ff172277493c https://www.encodeproject.org/files/ENCFF444DFU/@@download/ENCFF444DFU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF464JHD bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147LKM, ENCFF319KBV, ENCFF807MUK 4591302109 ENCODE Processing Pipeline 3a3acaf17fe8727438f5cd2775691562 https://www.encodeproject.org/files/ENCFF464JHD/@@download/ENCFF464JHD.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF089WVR bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF282WYC, ENCFF643CGH, ENCFF945NKO 5488565425 ENCODE Processing Pipeline 270a6febd8329f762a67ac236ea9759f https://www.encodeproject.org/files/ENCFF089WVR/@@download/ENCFF089WVR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF978XJH bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147LKM, ENCFF319KBV, ENCFF643CGH 4593925674 ENCODE Processing Pipeline d06a0c637a94fba5ee84bfb90dd4e0cf https://www.encodeproject.org/files/ENCFF978XJH/@@download/ENCFF978XJH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF010NVQ bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF282WYC, ENCFF807MUK, ENCFF945NKO 5485965312 ENCODE Processing Pipeline 59b27d0b13b51f63c32b47c52bd384e0 https://www.encodeproject.org/files/ENCFF010NVQ/@@download/ENCFF010NVQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF127UNG bigWig signal p-value ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF010NVQ 1482041061 ENCODE Processing Pipeline 857348597cccef75262a2f4aee9f5924 https://www.encodeproject.org/files/ENCFF127UNG/@@download/ENCFF127UNG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF168RCS bigWig signal p-value ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464JHD 1262844432 ENCODE Processing Pipeline e2ff55a41e73770ae651608f6e71816c https://www.encodeproject.org/files/ENCFF168RCS/@@download/ENCFF168RCS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF849DSW bigWig signal p-value ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF010NVQ, ENCFF464JHD 1979803130 ENCODE Processing Pipeline 92a06cb4741fdac7b1b012b310ac462f https://www.encodeproject.org/files/ENCFF849DSW/@@download/ENCFF849DSW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF600AFA bigWig fold change over control ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF010NVQ 1520796241 ENCODE Processing Pipeline d6b81d1029570246bea9a3b66a3aeeb5 https://www.encodeproject.org/files/ENCFF600AFA/@@download/ENCFF600AFA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF792TQC bigWig fold change over control ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464JHD 1373707445 ENCODE Processing Pipeline e6b4c550f7558211ff02a626d8de520c https://www.encodeproject.org/files/ENCFF792TQC/@@download/ENCFF792TQC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF433AAA bigWig fold change over control ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF010NVQ, ENCFF464JHD 2047021891 ENCODE Processing Pipeline 855672446664c4574757128dbe2d7f7b https://www.encodeproject.org/files/ENCFF433AAA/@@download/ENCFF433AAA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF581YXY bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF010NVQ 6859066 ENCODE Processing Pipeline 67049dd6fa473c43aa5e65c67f6d1942 https://www.encodeproject.org/files/ENCFF581YXY/@@download/ENCFF581YXY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF831UOD bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464JHD 6604766 ENCODE Processing Pipeline 790b956f44abc84fecef303637da4a01 https://www.encodeproject.org/files/ENCFF831UOD/@@download/ENCFF831UOD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF981KKC bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF010NVQ, ENCFF464JHD 7201664 ENCODE Processing Pipeline feb01eb5462c08593b488349e918389b https://www.encodeproject.org/files/ENCFF981KKC/@@download/ENCFF981KKC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF035RBI bigBed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF581YXY 11378988 ENCODE Processing Pipeline 11dc1c7b65f4b48fcf47bfabb4087e0f https://www.encodeproject.org/files/ENCFF035RBI/@@download/ENCFF035RBI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF184YVR bigBed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF831UOD 11400635 ENCODE Processing Pipeline c0170eb78d57080de4e14ddf3363194b https://www.encodeproject.org/files/ENCFF184YVR/@@download/ENCFF184YVR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF833NTQ bigBed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF981KKC 13411669 ENCODE Processing Pipeline 59700b190800ad3f466e6541a5e22d31 https://www.encodeproject.org/files/ENCFF833NTQ/@@download/ENCFF833NTQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF206SGM bed narrowPeak conservative idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF581YXY, ENCFF831UOD, ENCFF981KKC 127484 ENCODE Processing Pipeline 636b33a7451b5946c69f89043a4ab4f1 https://www.encodeproject.org/files/ENCFF206SGM/@@download/ENCFF206SGM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF566YKE bigBed narrowPeak conservative idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF206SGM 292556 ENCODE Processing Pipeline 3ddf458a448297a912a178fdadaf182a https://www.encodeproject.org/files/ENCFF566YKE/@@download/ENCFF566YKE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF355MAL bed narrowPeak optimal idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF581YXY, ENCFF831UOD, ENCFF981KKC 226849 ENCODE Processing Pipeline eb53a8a15dad4f1cb4fd57d7c2735e59 https://www.encodeproject.org/files/ENCFF355MAL/@@download/ENCFF355MAL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF935VFO bigBed narrowPeak optimal idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF355MAL 440223 ENCODE Processing Pipeline 0958a5bd22d30e7881c587c09f0ff1db https://www.encodeproject.org/files/ENCFF935VFO/@@download/ENCFF935VFO.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF289SOP bigWig signal p-value ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF089WVR 1501799953 ENCODE Processing Pipeline 883d93b0504fc0653c9864ef1db23055 https://www.encodeproject.org/files/ENCFF289SOP/@@download/ENCFF289SOP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF629NYJ bigWig signal p-value ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF978XJH 1227771436 ENCODE Processing Pipeline 680ff93cffee1fbdcb423b7551862603 https://www.encodeproject.org/files/ENCFF629NYJ/@@download/ENCFF629NYJ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF492GAY bigWig signal p-value ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF089WVR, ENCFF978XJH 1999305563 ENCODE Processing Pipeline 84863bbc7193d6f5b3db882dc65cdbfd https://www.encodeproject.org/files/ENCFF492GAY/@@download/ENCFF492GAY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF676CKS bigWig fold change over control ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF089WVR 1548579863 ENCODE Processing Pipeline 9ed98cb4aa2e0a9c5d1d20231eab939c https://www.encodeproject.org/files/ENCFF676CKS/@@download/ENCFF676CKS.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF089WXF bigWig fold change over control ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF978XJH 1381279275 ENCODE Processing Pipeline 97d8d0d7591f201fa154de1f5b00ed22 https://www.encodeproject.org/files/ENCFF089WXF/@@download/ENCFF089WXF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF583OIB bigWig fold change over control ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF089WVR, ENCFF978XJH 2059124986 ENCODE Processing Pipeline 3d329b39f3f75fb08b199618f8851184 https://www.encodeproject.org/files/ENCFF583OIB/@@download/ENCFF583OIB.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF286SEB bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF089WVR 6737729 ENCODE Processing Pipeline 1b7919d9df622f837c6a6c2a199d6a18 https://www.encodeproject.org/files/ENCFF286SEB/@@download/ENCFF286SEB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF559BER bigBed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF600PXK 11410609 ENCODE Processing Pipeline 62f91c117a0815cc07eb9db27afb9d0b https://www.encodeproject.org/files/ENCFF559BER/@@download/ENCFF559BER.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF600PXK bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF978XJH 6471168 ENCODE Processing Pipeline ff7274a63ce6bf0a140474ba3464aa59 https://www.encodeproject.org/files/ENCFF600PXK/@@download/ENCFF600PXK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF839TMK bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF089WVR, ENCFF978XJH 7145187 ENCODE Processing Pipeline e69f9bb9366471e42ae6fda698f474f6 https://www.encodeproject.org/files/ENCFF839TMK/@@download/ENCFF839TMK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF204RSH bigBed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF286SEB 11395218 ENCODE Processing Pipeline 5709614b1875b5b5275af72dc2bb20c0 https://www.encodeproject.org/files/ENCFF204RSH/@@download/ENCFF204RSH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF494AGK bigBed narrowPeak optimal idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF691JUF 441384 ENCODE Processing Pipeline fa3cd9a1e3b62df1d46f596749da5786 https://www.encodeproject.org/files/ENCFF494AGK/@@download/ENCFF494AGK.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF532WPD bed narrowPeak conservative idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286SEB, ENCFF419RSJ, ENCFF600PXK, ENCFF839TMK 129138 ENCODE Processing Pipeline 068de5f9cd01fbd8605de95da4658981 https://www.encodeproject.org/files/ENCFF532WPD/@@download/ENCFF532WPD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF647RNG bigBed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF839TMK 13429398 ENCODE Processing Pipeline d819b3cb63995807af0eab48993cfacc https://www.encodeproject.org/files/ENCFF647RNG/@@download/ENCFF647RNG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF691JUF bed narrowPeak optimal idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286SEB, ENCFF419RSJ, ENCFF600PXK, ENCFF839TMK 227289 ENCODE Processing Pipeline 6ea4d95568446cd4923789a8f3b54b7b https://www.encodeproject.org/files/ENCFF691JUF/@@download/ENCFF691JUF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF862SVL bigBed narrowPeak conservative idr thresholded peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF532WPD 295427 ENCODE Processing Pipeline 32bdba55f36b56901737689175a53f9e https://www.encodeproject.org/files/ENCFF862SVL/@@download/ENCFF862SVL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF468WIR fastq reads ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF593YWJ 1922846320 Michael Snyder, Stanford d00a5c4623cf2bee341c6ec47c80c1ec SRA:SRR6212912 https://www.encodeproject.org/files/ENCFF468WIR/@@download/ENCFF468WIR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF608LSC fastq reads ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 1 101 paired-ended 2 ENCFF377KMZ 2691893795 Michael Snyder, Stanford c5919011ed025c70ec1b82544483e339 SRA:SRR6212913 https://www.encodeproject.org/files/ENCFF608LSC/@@download/ENCFF608LSC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF593YWJ fastq reads ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF468WIR 1904393694 Michael Snyder, Stanford 3b6d9e2b9a62f14c90b52759c63f3fa1 SRA:SRR6212912 https://www.encodeproject.org/files/ENCFF593YWJ/@@download/ENCFF593YWJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF377KMZ fastq reads ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 1 101 paired-ended 1 ENCFF608LSC 2672105266 Michael Snyder, Stanford 5983243127bb88a63bf61b1d00c402ce SRA:SRR6212913 https://www.encodeproject.org/files/ENCFF377KMZ/@@download/ENCFF377KMZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF286VPW bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF468WIR, ENCFF593YWJ, ENCFF807MUK 3466226393 ENCODE Processing Pipeline 1e879c30d072de86be22d0f8b71f9fa2 https://www.encodeproject.org/files/ENCFF286VPW/@@download/ENCFF286VPW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF531OJY bam unfiltered alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF468WIR, ENCFF593YWJ, ENCFF807MUK 3980206316 ENCODE Processing Pipeline 9887923b37cc5ec582145bddc9d32a5d https://www.encodeproject.org/files/ENCFF531OJY/@@download/ENCFF531OJY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF409ETZ bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF468WIR, ENCFF593YWJ, ENCFF643CGH 3468948695 ENCODE Processing Pipeline 926b198de659904afdff0e8a11ea1aed https://www.encodeproject.org/files/ENCFF409ETZ/@@download/ENCFF409ETZ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF063ZKX bam unfiltered alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF468WIR, ENCFF593YWJ, ENCFF643CGH 3986628241 ENCODE Processing Pipeline fdd216cafd9955c686eeb68917c03718 https://www.encodeproject.org/files/ENCFF063ZKX/@@download/ENCFF063ZKX.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF865VWA bam unfiltered alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 101 ENCFF377KMZ, ENCFF608LSC, ENCFF807MUK 5427473930 ENCODE Processing Pipeline a27754412a13e51002240445b42b2a89 https://www.encodeproject.org/files/ENCFF865VWA/@@download/ENCFF865VWA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF514JGR bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 101 ENCFF377KMZ, ENCFF608LSC, ENCFF807MUK 4723963490 ENCODE Processing Pipeline bb3a73a9e3a0cbed5b5f2474127efc97 https://www.encodeproject.org/files/ENCFF514JGR/@@download/ENCFF514JGR.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF393FCL bam unfiltered alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 101 ENCFF377KMZ, ENCFF608LSC, ENCFF643CGH 5436076798 ENCODE Processing Pipeline 7e3627e98cccd02c5cd169d511de9f03 https://www.encodeproject.org/files/ENCFF393FCL/@@download/ENCFF393FCL.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF393EZW bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 101 ENCFF377KMZ, ENCFF608LSC, ENCFF643CGH 4727717391 ENCODE Processing Pipeline 9e5184d9b074ab28face9fda8ed8ed3f https://www.encodeproject.org/files/ENCFF393EZW/@@download/ENCFF393EZW.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF709KYM bigWig signal p-value ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF286VPW 1104135253 ENCODE Processing Pipeline 82b94cbcc5c58e69515eeb8dd59f70e9 https://www.encodeproject.org/files/ENCFF709KYM/@@download/ENCFF709KYM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF257HGV bigWig signal p-value ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF514JGR 1263075402 ENCODE Processing Pipeline 3b0d646a8a81ea74892ea4bbfafc680b https://www.encodeproject.org/files/ENCFF257HGV/@@download/ENCFF257HGV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF163KSK bigWig signal p-value ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF286VPW, ENCFF514JGR 1637176739 ENCODE Processing Pipeline 53533a68f366b4b2de9110a23f818d98 https://www.encodeproject.org/files/ENCFF163KSK/@@download/ENCFF163KSK.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF081MOM bigWig fold change over control ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF514JGR 1437685136 ENCODE Processing Pipeline e859a73a94ac8fb9bbcf21c862d2316d https://www.encodeproject.org/files/ENCFF081MOM/@@download/ENCFF081MOM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF648YIN bigWig fold change over control ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF286VPW 1178989441 ENCODE Processing Pipeline c7e3b6a3c6f4a0d8ec32d1c8a401bfd8 https://www.encodeproject.org/files/ENCFF648YIN/@@download/ENCFF648YIN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF071QIP bigWig fold change over control ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF286VPW, ENCFF514JGR 1862326902 ENCODE Processing Pipeline d6de35d32962493e60e397309315c9e7 https://www.encodeproject.org/files/ENCFF071QIP/@@download/ENCFF071QIP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF278JZE bigBed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF190LGZ 11241369 ENCODE Processing Pipeline e9ed92f292bbb013853e0222e180bceb https://www.encodeproject.org/files/ENCFF278JZE/@@download/ENCFF278JZE.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF710OUS bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF286VPW, ENCFF514JGR 7013763 ENCODE Processing Pipeline e43d49c697321e2248a5a0c5037a3cef https://www.encodeproject.org/files/ENCFF710OUS/@@download/ENCFF710OUS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF499QRO bigBed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF187APX 11294797 ENCODE Processing Pipeline 0c7fb4ac235f4a7af7cb92d7373956e8 https://www.encodeproject.org/files/ENCFF499QRO/@@download/ENCFF499QRO.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF190LGZ bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF514JGR 6400415 ENCODE Processing Pipeline c254c0ba91eacd3fcae812e6dddcd240 https://www.encodeproject.org/files/ENCFF190LGZ/@@download/ENCFF190LGZ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF227ATW bed narrowPeak conservative idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF001TDO, ENCFF187APX, ENCFF190LGZ, ENCFF710OUS 15646 ENCODE Processing Pipeline ce5ebe5f405b2cfe3928e94a0db947e9 https://www.encodeproject.org/files/ENCFF227ATW/@@download/ENCFF227ATW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF082KIH bigBed narrowPeak conservative idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF227ATW 77326 ENCODE Processing Pipeline dec69fa4b192223875a4e9eed78578ea https://www.encodeproject.org/files/ENCFF082KIH/@@download/ENCFF082KIH.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF981API bed narrowPeak optimal idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF001TDO, ENCFF187APX, ENCFF190LGZ, ENCFF710OUS 26053 ENCODE Processing Pipeline adba185066ef573f0237eb2fb038a40d https://www.encodeproject.org/files/ENCFF981API/@@download/ENCFF981API.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF187APX bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF286VPW 6036972 ENCODE Processing Pipeline cea3b79aeef9e55b46aedcbd7c83131e https://www.encodeproject.org/files/ENCFF187APX/@@download/ENCFF187APX.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF500FIW bigBed narrowPeak optimal idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF981API 94087 ENCODE Processing Pipeline 6fe643a1cad53078f1d6c1f8e3220b4b https://www.encodeproject.org/files/ENCFF500FIW/@@download/ENCFF500FIW.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF251FAA bigBed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF710OUS 11119321 ENCODE Processing Pipeline bfad24ea9c913cd5d7cac1bcfb72b7b7 https://www.encodeproject.org/files/ENCFF251FAA/@@download/ENCFF251FAA.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF008SGS bigWig fold change over control ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF409ETZ 1182419582 ENCODE Processing Pipeline ba55f55556dd3a00121292381a3029e9 https://www.encodeproject.org/files/ENCFF008SGS/@@download/ENCFF008SGS.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF381LCF bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF409ETZ 6042103 ENCODE Processing Pipeline e6c21741180ff9f6b0392e3fe5483ee1 https://www.encodeproject.org/files/ENCFF381LCF/@@download/ENCFF381LCF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF113NNQ bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF393EZW, ENCFF409ETZ 7031169 ENCODE Processing Pipeline fba733ea8fbca2ce638f90ddcda94609 https://www.encodeproject.org/files/ENCFF113NNQ/@@download/ENCFF113NNQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF554KNF bed narrowPeak conservative idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF113NNQ, ENCFF381LCF, ENCFF404AUY, ENCFF419RSJ 16212 ENCODE Processing Pipeline e59327a9a10d39da75a85b593637e906 https://www.encodeproject.org/files/ENCFF554KNF/@@download/ENCFF554KNF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF671ZXB bigWig signal p-value ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF409ETZ 1183562458 ENCODE Processing Pipeline 8501ea697d7108d5886c76aaf2fec007 https://www.encodeproject.org/files/ENCFF671ZXB/@@download/ENCFF671ZXB.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF734HYY bigBed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF404AUY 11253007 ENCODE Processing Pipeline 398c6abb7f41453423d22e7a3cc7ca3e https://www.encodeproject.org/files/ENCFF734HYY/@@download/ENCFF734HYY.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF852UTU bigWig signal p-value ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF393EZW, ENCFF409ETZ 1799821519 ENCODE Processing Pipeline db6ecd738100c15d9d5eeeab238910e2 https://www.encodeproject.org/files/ENCFF852UTU/@@download/ENCFF852UTU.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF875ANW bigBed narrowPeak conservative idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF554KNF 79436 ENCODE Processing Pipeline 2318521ebf16388ccffe6dc8557846f0 https://www.encodeproject.org/files/ENCFF875ANW/@@download/ENCFF875ANW.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF872RWT bigWig signal p-value ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF393EZW 1442947142 ENCODE Processing Pipeline e7a618c22cbb6d051443f41ea1ce56a7 https://www.encodeproject.org/files/ENCFF872RWT/@@download/ENCFF872RWT.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF058LRX bigWig fold change over control ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF393EZW 1404689854 ENCODE Processing Pipeline 858c256428a8074c80983ccc18882c05 https://www.encodeproject.org/files/ENCFF058LRX/@@download/ENCFF058LRX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF835ZIW bigWig fold change over control ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF393EZW, ENCFF409ETZ 1864067456 ENCODE Processing Pipeline f3cbaf29e41210ad220d3762970cf2ae https://www.encodeproject.org/files/ENCFF835ZIW/@@download/ENCFF835ZIW.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF404AUY bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 ENCFF393EZW 6404959 ENCODE Processing Pipeline 72a023c6898a890f99ede11c5822d944 https://www.encodeproject.org/files/ENCFF404AUY/@@download/ENCFF404AUY.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF432YHU bigBed narrowPeak optimal idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF869NMB 97358 ENCODE Processing Pipeline ac0f41f8598b78a0fe137d1adc091e5f https://www.encodeproject.org/files/ENCFF432YHU/@@download/ENCFF432YHU.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF093PZL bigBed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF381LCF 11317233 ENCODE Processing Pipeline f6d4b04b8ad81d370d60af3a71eba358 https://www.encodeproject.org/files/ENCFF093PZL/@@download/ENCFF093PZL.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF938AOJ bigBed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF113NNQ 11122892 ENCODE Processing Pipeline c9bcb416d335d20da798280edcab9a3b https://www.encodeproject.org/files/ENCFF938AOJ/@@download/ENCFF938AOJ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF869NMB bed narrowPeak optimal idr thresholded peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2, 3 ENCFF113NNQ, ENCFF381LCF, ENCFF404AUY, ENCFF419RSJ 27203 ENCODE Processing Pipeline 814adf2da2e86351399bc02c1f94f217 https://www.encodeproject.org/files/ENCFF869NMB/@@download/ENCFF869NMB.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF508MSA fastq reads ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF348DMK 1989110720 Michael Snyder, Stanford 2c91c13d36c01b7792108276fb7bd270 SRA:SRR5111489 https://www.encodeproject.org/files/ENCFF508MSA/@@download/ENCFF508MSA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF193OEU fastq reads ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF314RZT 1913439894 Michael Snyder, Stanford 1cb41cf48d68ff88a88069d143433710 SRA:SRR5111490 https://www.encodeproject.org/files/ENCFF193OEU/@@download/ENCFF193OEU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF314RZT fastq reads ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF193OEU 1966138116 Michael Snyder, Stanford 0e848ca47dd3e42e02f40d2285d914fc SRA:SRR5111490 https://www.encodeproject.org/files/ENCFF314RZT/@@download/ENCFF314RZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF348DMK fastq reads ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF508MSA 2043284954 Michael Snyder, Stanford 7c3c846bc25f42457832745454c6f1f0 SRA:SRR5111489 https://www.encodeproject.org/files/ENCFF348DMK/@@download/ENCFF348DMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF984NEJ bam unfiltered alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF193OEU, ENCFF314RZT, ENCFF643CGH 4421801647 ENCODE Processing Pipeline 2832cde05042937d1278b3703732769f https://www.encodeproject.org/files/ENCFF984NEJ/@@download/ENCFF984NEJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF951TPS bam unfiltered alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF193OEU, ENCFF314RZT, ENCFF807MUK 4414821214 ENCODE Processing Pipeline 1230e505f251c093b6453c5d99d61184 https://www.encodeproject.org/files/ENCFF951TPS/@@download/ENCFF951TPS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF156DTE bam unfiltered alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF348DMK, ENCFF508MSA, ENCFF643CGH 4579149151 ENCODE Processing Pipeline 5fb53d6b805542cdcef357d85b6850d2 https://www.encodeproject.org/files/ENCFF156DTE/@@download/ENCFF156DTE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF040RPZ bam unfiltered alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF348DMK, ENCFF508MSA, ENCFF807MUK 4572289898 ENCODE Processing Pipeline 83bbf9c18b433bdf7059763309cfbabe https://www.encodeproject.org/files/ENCFF040RPZ/@@download/ENCFF040RPZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF824EPV bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF193OEU, ENCFF314RZT, ENCFF807MUK 3817483428 ENCODE Processing Pipeline dc9dc8c1279a617a5dfe99f31fb5a72a https://www.encodeproject.org/files/ENCFF824EPV/@@download/ENCFF824EPV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF361WFA bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF193OEU, ENCFF314RZT, ENCFF643CGH 3820439646 ENCODE Processing Pipeline 383b36fdc3707596ede40ab0a276b4c1 https://www.encodeproject.org/files/ENCFF361WFA/@@download/ENCFF361WFA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF086BGG bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF348DMK, ENCFF508MSA, ENCFF643CGH 3983656900 ENCODE Processing Pipeline 9e39fc3258f64c11d23c2eb742e67a8a https://www.encodeproject.org/files/ENCFF086BGG/@@download/ENCFF086BGG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF340ZCE bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF348DMK, ENCFF508MSA, ENCFF807MUK 3981093645 ENCODE Processing Pipeline 71b4d554afe17b7f1c0dcb38e5bf6811 https://www.encodeproject.org/files/ENCFF340ZCE/@@download/ENCFF340ZCE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF006HNK bigWig signal p-value ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF824EPV 1292319816 ENCODE Processing Pipeline 0452c21061819fd413218b4175c5eae6 https://www.encodeproject.org/files/ENCFF006HNK/@@download/ENCFF006HNK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF164SII bigWig signal p-value ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340ZCE 1406847354 ENCODE Processing Pipeline b612dbbeee073f7468f73fcd6aeff241 https://www.encodeproject.org/files/ENCFF164SII/@@download/ENCFF164SII.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF992BPM bigWig signal p-value ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340ZCE, ENCFF824EPV 1793501430 ENCODE Processing Pipeline 586b2f19025e3eed9fbd1f445d71f689 https://www.encodeproject.org/files/ENCFF992BPM/@@download/ENCFF992BPM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF652HSC bigWig fold change over control ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF824EPV 1268249527 ENCODE Processing Pipeline c8a76cb3bfe4f9fc9970b21b1d2a4f5b https://www.encodeproject.org/files/ENCFF652HSC/@@download/ENCFF652HSC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF208NXP bigWig fold change over control ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340ZCE 1319604139 ENCODE Processing Pipeline 9933da8218fd4c26689da4669c76c0be https://www.encodeproject.org/files/ENCFF208NXP/@@download/ENCFF208NXP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF937BVF bigWig fold change over control ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340ZCE, ENCFF824EPV 1837377342 ENCODE Processing Pipeline e30a8964eb98e65fc3a5d8c847802862 https://www.encodeproject.org/files/ENCFF937BVF/@@download/ENCFF937BVF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF750QCA bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF824EPV 6442404 ENCODE Processing Pipeline b2ca1301c63e6ad441c538f7f03310ff https://www.encodeproject.org/files/ENCFF750QCA/@@download/ENCFF750QCA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF416SHN bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340ZCE 6501286 ENCODE Processing Pipeline 3a3daee23157037cf71f16a351aed776 https://www.encodeproject.org/files/ENCFF416SHN/@@download/ENCFF416SHN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF248RLW bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF340ZCE, ENCFF824EPV 7002629 ENCODE Processing Pipeline 4d6de498e20c543bafe1bcf821c1deae https://www.encodeproject.org/files/ENCFF248RLW/@@download/ENCFF248RLW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF084KWH bigBed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750QCA 11387032 ENCODE Processing Pipeline bbbd6d78b05abe618f5fc681c5f7d37c https://www.encodeproject.org/files/ENCFF084KWH/@@download/ENCFF084KWH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF819OHO bigBed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF416SHN 11381915 ENCODE Processing Pipeline f751f5e58b3157bcbd45af15f1011e72 https://www.encodeproject.org/files/ENCFF819OHO/@@download/ENCFF819OHO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF935PHD bigBed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF248RLW 11173180 ENCODE Processing Pipeline 866a2f0eca11e0f59099bb40352ffa2f https://www.encodeproject.org/files/ENCFF935PHD/@@download/ENCFF935PHD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF978PTL bed narrowPeak conservative idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF248RLW, ENCFF416SHN, ENCFF750QCA 45399 ENCODE Processing Pipeline 52dfd9845353fd9f39cc3d7edadd4c50 https://www.encodeproject.org/files/ENCFF978PTL/@@download/ENCFF978PTL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF864OBR bigBed narrowPeak conservative idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF978PTL 129607 ENCODE Processing Pipeline 8c10eaad70524928a363e5562afb78a1 https://www.encodeproject.org/files/ENCFF864OBR/@@download/ENCFF864OBR.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF010JWV bed narrowPeak optimal idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF248RLW, ENCFF416SHN, ENCFF750QCA 65094 ENCODE Processing Pipeline 5cad01fa427ee398153aa3cd9bdd4e48 https://www.encodeproject.org/files/ENCFF010JWV/@@download/ENCFF010JWV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF936IVY bigBed narrowPeak optimal idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF010JWV 157793 ENCODE Processing Pipeline 816639630f5e4ac1f6e870eec91de008 https://www.encodeproject.org/files/ENCFF936IVY/@@download/ENCFF936IVY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF945YFX bigWig signal p-value ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF361WFA 1098990652 ENCODE Processing Pipeline b325dd95c9f8bbbc43d6159aba736564 https://www.encodeproject.org/files/ENCFF945YFX/@@download/ENCFF945YFX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF788NBS bigWig signal p-value ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF086BGG, ENCFF361WFA 1789111807 ENCODE Processing Pipeline ccfadb84ae867ed740eb782e9ab818ad https://www.encodeproject.org/files/ENCFF788NBS/@@download/ENCFF788NBS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF668NIG bigWig fold change over control ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF361WFA 1268563491 ENCODE Processing Pipeline e4a0601b657d8c20dd6f14b53ad1634b https://www.encodeproject.org/files/ENCFF668NIG/@@download/ENCFF668NIG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF844EPU bigWig signal p-value ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF086BGG 1313047247 ENCODE Processing Pipeline ec03f163e70f9b947cb266db16ef16dc https://www.encodeproject.org/files/ENCFF844EPU/@@download/ENCFF844EPU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF542IGX bigWig fold change over control ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF086BGG 1323926682 ENCODE Processing Pipeline cee9de54030bf863ffc7d06d840a56eb https://www.encodeproject.org/files/ENCFF542IGX/@@download/ENCFF542IGX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF325ADD bigWig fold change over control ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF086BGG, ENCFF361WFA 1875147452 ENCODE Processing Pipeline 28f70e9a73654022d68932d0fb69bf74 https://www.encodeproject.org/files/ENCFF325ADD/@@download/ENCFF325ADD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF708QBV bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF086BGG 6371780 ENCODE Processing Pipeline 520503182859a71547e8319f8b9be2f0 https://www.encodeproject.org/files/ENCFF708QBV/@@download/ENCFF708QBV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF222CYK bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF361WFA 6267690 ENCODE Processing Pipeline 89866b21321afa8855330e423ba4b1a3 https://www.encodeproject.org/files/ENCFF222CYK/@@download/ENCFF222CYK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF040QBG bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF086BGG, ENCFF361WFA 6911968 ENCODE Processing Pipeline 76a416d668e5eff8c33df507857cb8f0 https://www.encodeproject.org/files/ENCFF040QBG/@@download/ENCFF040QBG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF011GCI bigBed narrowPeak conservative idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF699DHT 133155 ENCODE Processing Pipeline 9c8d41102758c7a9d5c1cfdfc5ddb403 https://www.encodeproject.org/files/ENCFF011GCI/@@download/ENCFF011GCI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF793YYO bigBed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF708QBV 11388128 ENCODE Processing Pipeline cb2eafc9b6c13ac5947407e23d7003d6 https://www.encodeproject.org/files/ENCFF793YYO/@@download/ENCFF793YYO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF699DHT bed narrowPeak conservative idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF040QBG, ENCFF222CYK, ENCFF419RSJ, ENCFF708QBV 47174 ENCODE Processing Pipeline 617ca4b693c42ba4cf5e75973628ba07 https://www.encodeproject.org/files/ENCFF699DHT/@@download/ENCFF699DHT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF361QAM bigBed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF222CYK 11389884 ENCODE Processing Pipeline dc2e97cd67ff72b5c4bc8b3bc925f29b https://www.encodeproject.org/files/ENCFF361QAM/@@download/ENCFF361QAM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF763LWA bigBed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF040QBG 11183370 ENCODE Processing Pipeline fc35d7a62d26fd9a9b004fdde1fc58f7 https://www.encodeproject.org/files/ENCFF763LWA/@@download/ENCFF763LWA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF684WPJ bed narrowPeak optimal idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF040QBG, ENCFF222CYK, ENCFF419RSJ, ENCFF708QBV 68251 ENCODE Processing Pipeline f142430b6161320354374e482a706239 https://www.encodeproject.org/files/ENCFF684WPJ/@@download/ENCFF684WPJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF014ZON bigBed narrowPeak optimal idr thresholded peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF684WPJ 163264 ENCODE Processing Pipeline 823d9cfc9e879354d9b598bf60633190 https://www.encodeproject.org/files/ENCFF014ZON/@@download/ENCFF014ZON.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF752WRF fastq reads ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 1 100 paired-ended 1 ENCFF761OSS 2021544541 Michael Snyder, Stanford d8a5a068bc826d2a81b384924e7f7582 https://www.encodeproject.org/files/ENCFF752WRF/@@download/ENCFF752WRF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released experiment not submitted to GEO ENCFF761OSS fastq reads ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 1 100 paired-ended 2 ENCFF752WRF 2082712199 Michael Snyder, Stanford df24a0371db55eb08fd0d43d45b50f98 https://www.encodeproject.org/files/ENCFF761OSS/@@download/ENCFF761OSS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released experiment not submitted to GEO ENCFF949FMK bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF752WRF, ENCFF761OSS, ENCFF807MUK 3780307148 ENCODE Processing Pipeline 0f8d3fa5769f1bf2118efc819984427e https://www.encodeproject.org/files/ENCFF949FMK/@@download/ENCFF949FMK.bam hg19 released experiment not submitted to GEO ENCFF684YTI fastq reads ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 1 101 paired-ended 1 ENCFF412VSI 3975367499 Michael Snyder, Stanford b4bc1238bd36a3407e49ec2b54d887b9 https://www.encodeproject.org/files/ENCFF684YTI/@@download/ENCFF684YTI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released experiment not submitted to GEO ENCFF412VSI fastq reads ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 1 101 paired-ended 2 ENCFF684YTI 3960630188 Michael Snyder, Stanford a0d38ccb6387e5cdd967b64f23127b27 https://www.encodeproject.org/files/ENCFF412VSI/@@download/ENCFF412VSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released experiment not submitted to GEO ENCFF077WZY bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF643CGH, ENCFF752WRF, ENCFF761OSS 3782017955 ENCODE Processing Pipeline b614062bb3e148809baa680763191432 https://www.encodeproject.org/files/ENCFF077WZY/@@download/ENCFF077WZY.bam GRCh38 released experiment not submitted to GEO ENCFF726DFP bam unfiltered alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF643CGH, ENCFF752WRF, ENCFF761OSS 4524207950 ENCODE Processing Pipeline 6d738867d8b88b31546bbec81b23c865 https://www.encodeproject.org/files/ENCFF726DFP/@@download/ENCFF726DFP.bam GRCh38 released experiment not submitted to GEO ENCFF063HJG bam unfiltered alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 101 ENCFF412VSI, ENCFF643CGH, ENCFF684YTI 7539742182 ENCODE Processing Pipeline 01c828cd460251983c98fd7e37b5dc3d https://www.encodeproject.org/files/ENCFF063HJG/@@download/ENCFF063HJG.bam GRCh38 released experiment not submitted to GEO ENCFF592NKN bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 101 ENCFF412VSI, ENCFF643CGH, ENCFF684YTI 6529987744 ENCODE Processing Pipeline a199dea795bb27c3beabb57321c16566 https://www.encodeproject.org/files/ENCFF592NKN/@@download/ENCFF592NKN.bam GRCh38 released experiment not submitted to GEO ENCFF468MXQ bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 101 ENCFF412VSI, ENCFF684YTI, ENCFF807MUK 6528672768 ENCODE Processing Pipeline d5d92b6829b1027cc521557a5de9462d https://www.encodeproject.org/files/ENCFF468MXQ/@@download/ENCFF468MXQ.bam hg19 released experiment not submitted to GEO ENCFF576FLY bam unfiltered alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 101 ENCFF412VSI, ENCFF684YTI, ENCFF807MUK 7530897648 ENCODE Processing Pipeline 095b6818bbca18f2da672f12c1e361e1 https://www.encodeproject.org/files/ENCFF576FLY/@@download/ENCFF576FLY.bam hg19 released experiment not submitted to GEO ENCFF763CRS bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF077WZY, ENCFF910IKB 6607522 ENCODE Processing Pipeline d5ffa2cf4bff4b7b70ac35873a09eedf https://www.encodeproject.org/files/ENCFF763CRS/@@download/ENCFF763CRS.bed.gz GRCh38 released experiment not submitted to GEO ENCFF509XKO bigWig signal p-value ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF077WZY, ENCFF910IKB 1122564292 ENCODE Processing Pipeline d22392de09a23e06cce37711ea130b5d https://www.encodeproject.org/files/ENCFF509XKO/@@download/ENCFF509XKO.bigWig GRCh38 released experiment not submitted to GEO ENCFF963EIT bigWig fold change over control ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF077WZY, ENCFF227IZS, ENCFF592NKN, ENCFF910IKB 2311718553 ENCODE Processing Pipeline 694418e2a0646a495e99b7607bbeae23 https://www.encodeproject.org/files/ENCFF963EIT/@@download/ENCFF963EIT.bigWig GRCh38 released experiment not submitted to GEO ENCFF695LCK bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF077WZY, ENCFF227IZS, ENCFF592NKN, ENCFF910IKB 7195293 ENCODE Processing Pipeline 0e1ea22bf01046ba412bbd4829735a05 https://www.encodeproject.org/files/ENCFF695LCK/@@download/ENCFF695LCK.bed.gz GRCh38 released experiment not submitted to GEO ENCFF177PAY bigBed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF695LCK 13129706 ENCODE Processing Pipeline f928260c8d862c1549b249548995fb7f https://www.encodeproject.org/files/ENCFF177PAY/@@download/ENCFF177PAY.bigBed GRCh38 released experiment not submitted to GEO ENCFF848ONP bigBed narrowPeak conservative idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF529AJE 204285 ENCODE Processing Pipeline bb398e8493251157af26737b438bb4c9 https://www.encodeproject.org/files/ENCFF848ONP/@@download/ENCFF848ONP.bigBed GRCh38 released experiment not submitted to GEO ENCFF057PZJ bigWig fold change over control ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF077WZY, ENCFF910IKB 1113423693 ENCODE Processing Pipeline c3d42365936e9e2e726e5ceb26bff2b9 https://www.encodeproject.org/files/ENCFF057PZJ/@@download/ENCFF057PZJ.bigWig GRCh38 released experiment not submitted to GEO ENCFF109VHO bigBed narrowPeak optimal idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF979GFF 247313 ENCODE Processing Pipeline 9a096302b213fa4b4d82902b4b6890c6 https://www.encodeproject.org/files/ENCFF109VHO/@@download/ENCFF109VHO.bigBed GRCh38 released experiment not submitted to GEO ENCFF864BPZ bigWig signal p-value ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF227IZS, ENCFF592NKN, ENCFF910IKB 1837344786 ENCODE Processing Pipeline 33a2a0d3ab4f492dbe4ee6a2f83318bb https://www.encodeproject.org/files/ENCFF864BPZ/@@download/ENCFF864BPZ.bigWig GRCh38 released experiment not submitted to GEO ENCFF213KDE bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF227IZS, ENCFF592NKN, ENCFF910IKB 6868277 ENCODE Processing Pipeline 3dd539b2b1f3e7e4a527028b4286de15 https://www.encodeproject.org/files/ENCFF213KDE/@@download/ENCFF213KDE.bed.gz GRCh38 released experiment not submitted to GEO ENCFF979GFF bed narrowPeak optimal idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF213KDE, ENCFF419RSJ, ENCFF695LCK, ENCFF763CRS 102256 ENCODE Processing Pipeline 2b592e6a75fb28ad53ac77be04c8ff20 https://www.encodeproject.org/files/ENCFF979GFF/@@download/ENCFF979GFF.bed.gz GRCh38 released experiment not submitted to GEO ENCFF792OCL bigWig signal p-value ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF077WZY, ENCFF227IZS, ENCFF592NKN, ENCFF910IKB 2042607741 ENCODE Processing Pipeline 094880fe8c9c7b152686b77f17cba83f https://www.encodeproject.org/files/ENCFF792OCL/@@download/ENCFF792OCL.bigWig GRCh38 released experiment not submitted to GEO ENCFF948TRW bigWig fold change over control ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF227IZS, ENCFF592NKN, ENCFF910IKB 1952522950 ENCODE Processing Pipeline 4399faa1edcec5dde9389a0699044078 https://www.encodeproject.org/files/ENCFF948TRW/@@download/ENCFF948TRW.bigWig GRCh38 released experiment not submitted to GEO ENCFF567GMN bigBed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF763CRS 13304423 ENCODE Processing Pipeline 6602185780b00f90fa0da3351d9ab045 https://www.encodeproject.org/files/ENCFF567GMN/@@download/ENCFF567GMN.bigBed GRCh38 released experiment not submitted to GEO ENCFF400VUF bigBed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF213KDE 11217728 ENCODE Processing Pipeline ae3a301f8cd9e7569da330af85c70ee5 https://www.encodeproject.org/files/ENCFF400VUF/@@download/ENCFF400VUF.bigBed GRCh38 released experiment not submitted to GEO ENCFF529AJE bed narrowPeak conservative idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF213KDE, ENCFF419RSJ, ENCFF695LCK, ENCFF763CRS 75052 ENCODE Processing Pipeline d9ee38d656ac77d33d9def012ac547c9 https://www.encodeproject.org/files/ENCFF529AJE/@@download/ENCFF529AJE.bed.gz GRCh38 released experiment not submitted to GEO ENCFF607JKX bam unfiltered alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF752WRF, ENCFF761OSS, ENCFF807MUK 4518754782 ENCODE Processing Pipeline 291a6dc5c35cdb35701613402e1b28b6 https://www.encodeproject.org/files/ENCFF607JKX/@@download/ENCFF607JKX.bam hg19 released experiment not submitted to GEO ENCFF098RVJ bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF752WRF, ENCFF761OSS, ENCFF807MUK 3780307176 ENCODE Processing Pipeline b2fa64dc8e9179e757bd17c0d3997e39 https://www.encodeproject.org/files/ENCFF098RVJ/@@download/ENCFF098RVJ.bam hg19 released experiment not submitted to GEO ENCFF028OLZ bigWig signal p-value ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF098RVJ, ENCFF581ZJL 1063393303 ENCODE Processing Pipeline 90f42b92b4339b928c2a15af12e8023e https://www.encodeproject.org/files/ENCFF028OLZ/@@download/ENCFF028OLZ.bigWig hg19 released experiment not submitted to GEO ENCFF788MZM bigWig fold change over control ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF098RVJ, ENCFF581ZJL 1110005789 ENCODE Processing Pipeline 7032fe1aaf1aedd2cad43e0d2017fd61 https://www.encodeproject.org/files/ENCFF788MZM/@@download/ENCFF788MZM.bigWig hg19 released experiment not submitted to GEO ENCFF996UAE bigWig signal p-value ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF051LWI, ENCFF468MXQ, ENCFF581ZJL 1741531409 ENCODE Processing Pipeline 1d093cf92bbbc675e9931204e45ceea2 https://www.encodeproject.org/files/ENCFF996UAE/@@download/ENCFF996UAE.bigWig hg19 released experiment not submitted to GEO ENCFF692CVG bigWig signal p-value ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF051LWI, ENCFF098RVJ, ENCFF468MXQ, ENCFF581ZJL 2273575772 ENCODE Processing Pipeline 36def076b5e5c9971d868203cc8480a5 https://www.encodeproject.org/files/ENCFF692CVG/@@download/ENCFF692CVG.bigWig hg19 released experiment not submitted to GEO ENCFF792SGT bigWig fold change over control ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF051LWI, ENCFF468MXQ, ENCFF581ZJL 1925475740 ENCODE Processing Pipeline a0898cee08e6e520fbe239c57b76f223 https://www.encodeproject.org/files/ENCFF792SGT/@@download/ENCFF792SGT.bigWig hg19 released experiment not submitted to GEO ENCFF025DGW bigWig fold change over control ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF051LWI, ENCFF098RVJ, ENCFF468MXQ, ENCFF581ZJL 2296280638 ENCODE Processing Pipeline 91eb729eb44e63cec1cb128c8d7baa06 https://www.encodeproject.org/files/ENCFF025DGW/@@download/ENCFF025DGW.bigWig hg19 released experiment not submitted to GEO ENCFF259GFJ bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF098RVJ, ENCFF581ZJL 6608166 ENCODE Processing Pipeline be6550ae5866d12ab52518bf4a4365df https://www.encodeproject.org/files/ENCFF259GFJ/@@download/ENCFF259GFJ.bed.gz hg19 released experiment not submitted to GEO ENCFF959BCM bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF051LWI, ENCFF468MXQ, ENCFF581ZJL 6867581 ENCODE Processing Pipeline 39927921f223a5a170cd617cb04b0f8f https://www.encodeproject.org/files/ENCFF959BCM/@@download/ENCFF959BCM.bed.gz hg19 released experiment not submitted to GEO ENCFF301MWW bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF051LWI, ENCFF098RVJ, ENCFF468MXQ, ENCFF581ZJL 7188444 ENCODE Processing Pipeline 7b522e0e03771150f6a44cee014b09d0 https://www.encodeproject.org/files/ENCFF301MWW/@@download/ENCFF301MWW.bed.gz hg19 released experiment not submitted to GEO ENCFF036WCQ bigBed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF259GFJ 13290904 ENCODE Processing Pipeline ecb0a2b3b441a81f9e405fabff5d2090 https://www.encodeproject.org/files/ENCFF036WCQ/@@download/ENCFF036WCQ.bigBed hg19 released experiment not submitted to GEO ENCFF251BRV bigBed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 ENCFF959BCM 11203139 ENCODE Processing Pipeline 385b8a440118e0bde9bc05b6a74bb34f https://www.encodeproject.org/files/ENCFF251BRV/@@download/ENCFF251BRV.bigBed hg19 released experiment not submitted to GEO ENCFF132RZH bigBed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF301MWW 13129105 ENCODE Processing Pipeline b46406764ace0aae48d4acc0b16d595b https://www.encodeproject.org/files/ENCFF132RZH/@@download/ENCFF132RZH.bigBed hg19 released experiment not submitted to GEO ENCFF609XKW bed narrowPeak conservative idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF001TDO, ENCFF259GFJ, ENCFF301MWW, ENCFF959BCM 74242 ENCODE Processing Pipeline 400112d6c2d97f1c4650512716dc15da https://www.encodeproject.org/files/ENCFF609XKW/@@download/ENCFF609XKW.bed.gz hg19 released experiment not submitted to GEO ENCFF460OQH bigBed narrowPeak conservative idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF609XKW 201671 ENCODE Processing Pipeline 11b87a94e592f69a02841c564f564a67 https://www.encodeproject.org/files/ENCFF460OQH/@@download/ENCFF460OQH.bigBed hg19 released experiment not submitted to GEO ENCFF303PMJ bed narrowPeak optimal idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF001TDO, ENCFF259GFJ, ENCFF301MWW, ENCFF959BCM 105003 ENCODE Processing Pipeline d1ef6c0a0056c7d72b674fe178969dd2 https://www.encodeproject.org/files/ENCFF303PMJ/@@download/ENCFF303PMJ.bed.gz hg19 released experiment not submitted to GEO ENCFF789MTT bigBed narrowPeak optimal idr thresholded peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1, 3 ENCFF303PMJ 249803 ENCODE Processing Pipeline 42f8c188f595e68905833233e528a6f9 https://www.encodeproject.org/files/ENCFF789MTT/@@download/ENCFF789MTT.bigBed hg19 released experiment not submitted to GEO ENCFF253DEI fastq reads ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF213PFC 2233771039 Michael Snyder, Stanford dfa2ff0abef9f673fd540109586ff990 SRA:SRR5111983 https://www.encodeproject.org/files/ENCFF253DEI/@@download/ENCFF253DEI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF519KJL fastq reads ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF610VOU 2027356181 Michael Snyder, Stanford 5c7221a9a2bf9f77f766cda99da8a322 SRA:SRR5111984 https://www.encodeproject.org/files/ENCFF519KJL/@@download/ENCFF519KJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF610VOU fastq reads ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF519KJL 2017832335 Michael Snyder, Stanford b54aa1dfa25a102b3c619295215dd350 SRA:SRR5111984 https://www.encodeproject.org/files/ENCFF610VOU/@@download/ENCFF610VOU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF213PFC fastq reads ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF253DEI 2300661157 Michael Snyder, Stanford 717a716644453deee627ea82177c3693 SRA:SRR5111983 https://www.encodeproject.org/files/ENCFF213PFC/@@download/ENCFF213PFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF542QTT bam unfiltered alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF519KJL, ENCFF610VOU, ENCFF643CGH 4556091024 ENCODE Processing Pipeline 8fcbf57ee4f7a976fc267ac048f053cb https://www.encodeproject.org/files/ENCFF542QTT/@@download/ENCFF542QTT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF107NWP bam unfiltered alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF213PFC, ENCFF253DEI, ENCFF643CGH 5066533170 ENCODE Processing Pipeline 9cc73921f9fc401cbe4c362de3087c63 https://www.encodeproject.org/files/ENCFF107NWP/@@download/ENCFF107NWP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF972GND bam unfiltered alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF519KJL, ENCFF610VOU, ENCFF807MUK 4549048077 ENCODE Processing Pipeline 2500c8e954669669639a0790a3e7d0e0 https://www.encodeproject.org/files/ENCFF972GND/@@download/ENCFF972GND.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF735OFV bam unfiltered alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF213PFC, ENCFF253DEI, ENCFF807MUK 5061617716 ENCODE Processing Pipeline 9887aa044881c3d75dfcf54e5dda84c8 https://www.encodeproject.org/files/ENCFF735OFV/@@download/ENCFF735OFV.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF229KVP bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF519KJL, ENCFF610VOU, ENCFF643CGH 4035546152 ENCODE Processing Pipeline 296d55e13a519eed688191ff10d53f4b https://www.encodeproject.org/files/ENCFF229KVP/@@download/ENCFF229KVP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF297BVZ bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF519KJL, ENCFF610VOU, ENCFF807MUK 4033600948 ENCODE Processing Pipeline a9ec52f28e8ae5d0c74b371417c604b9 https://www.encodeproject.org/files/ENCFF297BVZ/@@download/ENCFF297BVZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF027YWU bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF213PFC, ENCFF253DEI, ENCFF643CGH 4345762542 ENCODE Processing Pipeline 011f41e30e2387529f166b35a7ec8161 https://www.encodeproject.org/files/ENCFF027YWU/@@download/ENCFF027YWU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF864CXQ bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF213PFC, ENCFF253DEI, ENCFF807MUK 4343372968 ENCODE Processing Pipeline 97b9f327c9df1e9f6481ba73e3d51509 https://www.encodeproject.org/files/ENCFF864CXQ/@@download/ENCFF864CXQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF684PVK bigWig signal p-value ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297BVZ 1265586729 ENCODE Processing Pipeline cdb8451d15697fa882b047e3e8bce84c https://www.encodeproject.org/files/ENCFF684PVK/@@download/ENCFF684PVK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF654WUT bigWig signal p-value ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864CXQ 1328118740 ENCODE Processing Pipeline 2345257d62873a20b903af87ef32cd55 https://www.encodeproject.org/files/ENCFF654WUT/@@download/ENCFF654WUT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF289KZZ bigWig signal p-value ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF297BVZ, ENCFF864CXQ 1861683934 ENCODE Processing Pipeline 2983bdfec52ba36c39c78cf3c089c766 https://www.encodeproject.org/files/ENCFF289KZZ/@@download/ENCFF289KZZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF701QWK bigWig fold change over control ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297BVZ 1355695568 ENCODE Processing Pipeline a39f804e0ea4984f1700d53d3d4720a4 https://www.encodeproject.org/files/ENCFF701QWK/@@download/ENCFF701QWK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF933WIA bigWig fold change over control ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864CXQ 1431756946 ENCODE Processing Pipeline 8ea4d8f660bf417e729a2e63995e24e9 https://www.encodeproject.org/files/ENCFF933WIA/@@download/ENCFF933WIA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF890GPN bigWig fold change over control ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF297BVZ, ENCFF864CXQ 1952333740 ENCODE Processing Pipeline 40ff57aa0278256cac1ffb1720db233c https://www.encodeproject.org/files/ENCFF890GPN/@@download/ENCFF890GPN.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF804ZPQ bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297BVZ 6607910 ENCODE Processing Pipeline c3848129792150ebe33c3e7a09d097a0 https://www.encodeproject.org/files/ENCFF804ZPQ/@@download/ENCFF804ZPQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF103OUL bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF297BVZ, ENCFF864CXQ 7184504 ENCODE Processing Pipeline 720eb142ee0581febee590ca6ba8919a https://www.encodeproject.org/files/ENCFF103OUL/@@download/ENCFF103OUL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF499XUD bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864CXQ 6920618 ENCODE Processing Pipeline 60812865225bf22cb440022b8d6a87e4 https://www.encodeproject.org/files/ENCFF499XUD/@@download/ENCFF499XUD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF164ITD bigBed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF804ZPQ 11296590 ENCODE Processing Pipeline 86f917908f4edbf02380c89b1ec5a8d1 https://www.encodeproject.org/files/ENCFF164ITD/@@download/ENCFF164ITD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF408TAC bigBed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF499XUD 13337808 ENCODE Processing Pipeline 810746850a849e9a1fddfe65e6d89061 https://www.encodeproject.org/files/ENCFF408TAC/@@download/ENCFF408TAC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF942TTW bigBed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF103OUL 13196670 ENCODE Processing Pipeline 61ed579396d7faa56d3b62375635094e https://www.encodeproject.org/files/ENCFF942TTW/@@download/ENCFF942TTW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF579EPP bigBed narrowPeak conservative idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF786FAF 227800 ENCODE Processing Pipeline a45be27f04238b50716c4734770cfade https://www.encodeproject.org/files/ENCFF579EPP/@@download/ENCFF579EPP.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF786FAF bed narrowPeak conservative idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF103OUL, ENCFF499XUD, ENCFF804ZPQ 85515 ENCODE Processing Pipeline 92d5c5148e8c01cc4b1ab9ad905bf463 https://www.encodeproject.org/files/ENCFF786FAF/@@download/ENCFF786FAF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF045LTC bed narrowPeak optimal idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF103OUL, ENCFF499XUD, ENCFF804ZPQ 133070 ENCODE Processing Pipeline 78e40931e1277871066a6dd063f55dca https://www.encodeproject.org/files/ENCFF045LTC/@@download/ENCFF045LTC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF653XGP bigBed narrowPeak optimal idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF045LTC 300906 ENCODE Processing Pipeline b2fee15a58464d41c99ec168ee51a3e1 https://www.encodeproject.org/files/ENCFF653XGP/@@download/ENCFF653XGP.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF040XAW bigWig signal p-value ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229KVP 1185248690 ENCODE Processing Pipeline 2f9236c4505062eaef9fe1cee9d58916 https://www.encodeproject.org/files/ENCFF040XAW/@@download/ENCFF040XAW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF529BBL bigWig signal p-value ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF027YWU 1375645842 ENCODE Processing Pipeline 96ec47c348af29fda8073f6b88a37ee1 https://www.encodeproject.org/files/ENCFF529BBL/@@download/ENCFF529BBL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF588URP bigWig signal p-value ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF027YWU, ENCFF229KVP 1839073835 ENCODE Processing Pipeline e51a335456f755db3fe2aeb0af85873d https://www.encodeproject.org/files/ENCFF588URP/@@download/ENCFF588URP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF581EDD bigWig fold change over control ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229KVP 1386776688 ENCODE Processing Pipeline 684e20b5fa6999a5865e8690ebd1cbfa https://www.encodeproject.org/files/ENCFF581EDD/@@download/ENCFF581EDD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF648VVJ bigWig fold change over control ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF027YWU 1430925917 ENCODE Processing Pipeline 3a702ffb988c508fa5b6f921fc7ace4f https://www.encodeproject.org/files/ENCFF648VVJ/@@download/ENCFF648VVJ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF429TDQ bigWig fold change over control ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF027YWU, ENCFF229KVP 1963930414 ENCODE Processing Pipeline c5c32d39c1d888bbcc6c695a894d0762 https://www.encodeproject.org/files/ENCFF429TDQ/@@download/ENCFF429TDQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF956ULT bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF027YWU 6803069 ENCODE Processing Pipeline e5e744be567b42077ae99cb5f7d731ec https://www.encodeproject.org/files/ENCFF956ULT/@@download/ENCFF956ULT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF245MQQ bigBed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF858FMW 11305972 ENCODE Processing Pipeline 43b3e4546cd1b9cfc4ec27af350b524e https://www.encodeproject.org/files/ENCFF245MQQ/@@download/ENCFF245MQQ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF858FMW bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229KVP 6479595 ENCODE Processing Pipeline 841966bd39df7a4dddd18ec73d0fe68b https://www.encodeproject.org/files/ENCFF858FMW/@@download/ENCFF858FMW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF352CKY bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF027YWU, ENCFF229KVP 7144221 ENCODE Processing Pipeline fe7cb5443260f4761db65787de05e491 https://www.encodeproject.org/files/ENCFF352CKY/@@download/ENCFF352CKY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF187RYA bigBed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF956ULT 13351630 ENCODE Processing Pipeline d9cb5c806df05d288724aafc2e3a9e96 https://www.encodeproject.org/files/ENCFF187RYA/@@download/ENCFF187RYA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF078ACH bigBed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF352CKY 13199438 ENCODE Processing Pipeline 26c3493fb9c8c2c13bd9e1af8ed1d3d4 https://www.encodeproject.org/files/ENCFF078ACH/@@download/ENCFF078ACH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF988OUL bigBed narrowPeak conservative idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF245KFB 227360 ENCODE Processing Pipeline b6cfdf2b38e5578743d4a5b72b2bc051 https://www.encodeproject.org/files/ENCFF988OUL/@@download/ENCFF988OUL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF245KFB bed narrowPeak conservative idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF352CKY, ENCFF419RSJ, ENCFF858FMW, ENCFF956ULT 84084 ENCODE Processing Pipeline fc791036022e3acdb583eb71afb97f58 https://www.encodeproject.org/files/ENCFF245KFB/@@download/ENCFF245KFB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF132UAB bed narrowPeak optimal idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF352CKY, ENCFF419RSJ, ENCFF858FMW, ENCFF956ULT 133111 ENCODE Processing Pipeline f939f8a017cb3c8c8b339f5dc6a12d63 https://www.encodeproject.org/files/ENCFF132UAB/@@download/ENCFF132UAB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF119YZV bigBed narrowPeak optimal idr thresholded peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF132UAB 303153 ENCODE Processing Pipeline 49613eed1d82101913d578cfc5a8ca5f https://www.encodeproject.org/files/ENCFF119YZV/@@download/ENCFF119YZV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF360YAQ bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF807MUK, ENCFF849OLW 2854098932 ENCODE Processing Pipeline 29b8a9f62932bf5b025161a08fdaf6cc https://www.encodeproject.org/files/ENCFF360YAQ/@@download/ENCFF360YAQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF838KAW bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF807MUK, ENCFF881YFO 3811709858 ENCODE Processing Pipeline 70d7c2f3714e239f66e8f32661dcc0b3 https://www.encodeproject.org/files/ENCFF838KAW/@@download/ENCFF838KAW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF881YFO fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF551RMT 1847840534 Michael Snyder, Stanford 1f1c4eea9bf51d28f2dd954b0352a4db SRA:SRR5112011 https://www.encodeproject.org/files/ENCFF881YFO/@@download/ENCFF881YFO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF315WXD fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF849OLW 1362406100 Michael Snyder, Stanford 5502bdce04a369622d586363e9ef7598 SRA:SRR5112012 https://www.encodeproject.org/files/ENCFF315WXD/@@download/ENCFF315WXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF551RMT fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF881YFO 1788657333 Michael Snyder, Stanford 9d6d393908bc4942b65666f34222b1a3 SRA:SRR5112011 https://www.encodeproject.org/files/ENCFF551RMT/@@download/ENCFF551RMT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF849OLW fastq reads ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF315WXD 1324422299 Michael Snyder, Stanford b6e54101ffbbad36e436100083ad9f94 SRA:SRR5112012 https://www.encodeproject.org/files/ENCFF849OLW/@@download/ENCFF849OLW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF640ZFH bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF807MUK, ENCFF881YFO 3018905780 ENCODE Processing Pipeline c4173ed7bfe1d56d8f90e32d3850a69e https://www.encodeproject.org/files/ENCFF640ZFH/@@download/ENCFF640ZFH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF921QCO bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF807MUK, ENCFF849OLW 2067515529 ENCODE Processing Pipeline 77f9d4cb0733a81085f625135a384d33 https://www.encodeproject.org/files/ENCFF921QCO/@@download/ENCFF921QCO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF773LZZ bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 857826007 ENCODE Processing Pipeline 02b45e4f8265b10349369bb8f4dcecdf https://www.encodeproject.org/files/ENCFF773LZZ/@@download/ENCFF773LZZ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF166BQM bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 958443880 ENCODE Processing Pipeline 87e059a5df05540855d98859ad939cc8 https://www.encodeproject.org/files/ENCFF166BQM/@@download/ENCFF166BQM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF060HWM bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF287SKW, ENCFF640ZFH, ENCFF921QCO, ENCFF941TZZ 1687267738 ENCODE Processing Pipeline 557d5285b8dd9ace8eedf8e7c7fa4d14 https://www.encodeproject.org/files/ENCFF060HWM/@@download/ENCFF060HWM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF263ZFX bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 740122804 ENCODE Processing Pipeline 2513694f8a1ebf53f211f6685f9c1529 https://www.encodeproject.org/files/ENCFF263ZFX/@@download/ENCFF263ZFX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF429UOC bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 899333477 ENCODE Processing Pipeline c177407ec10fe52bce39dd431369585b https://www.encodeproject.org/files/ENCFF429UOC/@@download/ENCFF429UOC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF096FPV bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 6802246 ENCODE Processing Pipeline f5203c5698fefd6b48f9c515ad8427b2 https://www.encodeproject.org/files/ENCFF096FPV/@@download/ENCFF096FPV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF193RDB bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF287SKW, ENCFF640ZFH, ENCFF921QCO, ENCFF941TZZ 1697900303 ENCODE Processing Pipeline b12a57c837c1af9d777eaa9432d93337 https://www.encodeproject.org/files/ENCFF193RDB/@@download/ENCFF193RDB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF672AJR bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF869HSY 13069359 ENCODE Processing Pipeline 9a82b2e6422e495b9263305465c2b7ff https://www.encodeproject.org/files/ENCFF672AJR/@@download/ENCFF672AJR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF902EUL bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 6093521 ENCODE Processing Pipeline 8f43c053ef4719e21c74b514be24f543 https://www.encodeproject.org/files/ENCFF902EUL/@@download/ENCFF902EUL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF866DMK bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF902EUL 12955709 ENCODE Processing Pipeline 715546640b1fca03d592f64253b88f0a https://www.encodeproject.org/files/ENCFF866DMK/@@download/ENCFF866DMK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF869HSY bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF287SKW, ENCFF640ZFH, ENCFF921QCO, ENCFF941TZZ 7051964 ENCODE Processing Pipeline fdd6080bce4adf0bb2d486f8254c47ba https://www.encodeproject.org/files/ENCFF869HSY/@@download/ENCFF869HSY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF927ELR bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF096FPV 13165790 ENCODE Processing Pipeline 80e3f9e056025a9f3ca0403f08b8f981 https://www.encodeproject.org/files/ENCFF927ELR/@@download/ENCFF927ELR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF300OJT bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF643CGH, ENCFF849OLW 2854705504 ENCODE Processing Pipeline 37ce24249701d71a9b840c902d9e9425 https://www.encodeproject.org/files/ENCFF300OJT/@@download/ENCFF300OJT.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF548STS bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF643CGH, ENCFF849OLW 2070136854 ENCODE Processing Pipeline 69fa08c6b6633cc677dc1909df8232c6 https://www.encodeproject.org/files/ENCFF548STS/@@download/ENCFF548STS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF822WHM bam unfiltered alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF643CGH, ENCFF881YFO 3812008266 ENCODE Processing Pipeline 4d97a05f28b0d3e3fbc076c9eda3154a https://www.encodeproject.org/files/ENCFF822WHM/@@download/ENCFF822WHM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF360EFO bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF643CGH, ENCFF881YFO 3022717486 ENCODE Processing Pipeline d1f23fd5d6b37d1afd583710831f74cd https://www.encodeproject.org/files/ENCFF360EFO/@@download/ENCFF360EFO.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF391HXH bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF360EFO, ENCFF574BGV 905373903 ENCODE Processing Pipeline b6502921dd36f5b52cf5de4ab6a9e92c https://www.encodeproject.org/files/ENCFF391HXH/@@download/ENCFF391HXH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002LJX bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF548STS, ENCFF879YMO 743324732 ENCODE Processing Pipeline 539f5e6a1aeacc3eeccaa3c072c9baf6 https://www.encodeproject.org/files/ENCFF002LJX/@@download/ENCFF002LJX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF980GMH bed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF112GWM, ENCFF419RSJ, ENCFF956ZCR, ENCFF957SYD 542026 ENCODE Processing Pipeline 20e3ee66585a87ddcdd3bfb0a60f48d3 https://www.encodeproject.org/files/ENCFF980GMH/@@download/ENCFF980GMH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF971VHK bed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF112GWM, ENCFF419RSJ, ENCFF956ZCR, ENCFF957SYD 737606 ENCODE Processing Pipeline d6ded18f652f6451324d683126c15c78 https://www.encodeproject.org/files/ENCFF971VHK/@@download/ENCFF971VHK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749YTS bigBed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF971VHK 1404973 ENCODE Processing Pipeline 5359e4d0580cbbb3d091708432fbb13c https://www.encodeproject.org/files/ENCFF749YTS/@@download/ENCFF749YTS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF565ZLF bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF360EFO, ENCFF574BGV 899595493 ENCODE Processing Pipeline 29853729eb1e7b169e097a2dd9e88022 https://www.encodeproject.org/files/ENCFF565ZLF/@@download/ENCFF565ZLF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF942LAH bigBed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF980GMH 1110210 ENCODE Processing Pipeline e0bf0ea67906159673e30a19128e452f https://www.encodeproject.org/files/ENCFF942LAH/@@download/ENCFF942LAH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF483RCB bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF360EFO, ENCFF548STS, ENCFF574BGV, ENCFF879YMO 1594782063 ENCODE Processing Pipeline c345b4ff79b0d420a504091affbc3d67 https://www.encodeproject.org/files/ENCFF483RCB/@@download/ENCFF483RCB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF335EMP bigWig signal p-value ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF548STS, ENCFF879YMO 851966719 ENCODE Processing Pipeline dffe8895091c36bf6835f89c888b2c82 https://www.encodeproject.org/files/ENCFF335EMP/@@download/ENCFF335EMP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF858QNH bigWig fold change over control ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF360EFO, ENCFF548STS, ENCFF574BGV, ENCFF879YMO 1694359210 ENCODE Processing Pipeline 60a053b5a305b418919187ae06828d6f https://www.encodeproject.org/files/ENCFF858QNH/@@download/ENCFF858QNH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF621OLL bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF957SYD 12923116 ENCODE Processing Pipeline 485729c1ddb3d81c60d58541f05edf6b https://www.encodeproject.org/files/ENCFF621OLL/@@download/ENCFF621OLL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF227UQV bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF112GWM 13093616 ENCODE Processing Pipeline 8c8c20e9f3098e6a90b0021b985bf7c6 https://www.encodeproject.org/files/ENCFF227UQV/@@download/ENCFF227UQV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF403XWJ bigBed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF956ZCR 12720709 ENCODE Processing Pipeline b65774db79b9a104fac65de53672786b https://www.encodeproject.org/files/ENCFF403XWJ/@@download/ENCFF403XWJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF957SYD bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF548STS, ENCFF879YMO 5968661 ENCODE Processing Pipeline 215beb957febd2e8fdacc05a82edb201 https://www.encodeproject.org/files/ENCFF957SYD/@@download/ENCFF957SYD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF112GWM bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF360EFO, ENCFF574BGV 6663747 ENCODE Processing Pipeline 5695b2c18e9b6d6d25dfe27d23645f38 https://www.encodeproject.org/files/ENCFF112GWM/@@download/ENCFF112GWM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF956ZCR bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF360EFO, ENCFF548STS, ENCFF574BGV, ENCFF879YMO 6754552 ENCODE Processing Pipeline 22d3c6bd03e50388ff40bc396e08a64f https://www.encodeproject.org/files/ENCFF956ZCR/@@download/ENCFF956ZCR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF515HWO bed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF096FPV, ENCFF869HSY, ENCFF902EUL 480476 ENCODE Processing Pipeline 6e3685707be0e66d9511c5d64b130d18 https://www.encodeproject.org/files/ENCFF515HWO/@@download/ENCFF515HWO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF362HQV bigBed narrowPeak conservative idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF515HWO 1045907 ENCODE Processing Pipeline 912df3987697fe78db3936e16c190d34 https://www.encodeproject.org/files/ENCFF362HQV/@@download/ENCFF362HQV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF405NFV bed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF096FPV, ENCFF869HSY, ENCFF902EUL 684545 ENCODE Processing Pipeline fce6b7bb691da8b4efbb92e321b433a9 https://www.encodeproject.org/files/ENCFF405NFV/@@download/ENCFF405NFV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF657MVE bigBed narrowPeak optimal idr thresholded peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF405NFV 1347793 ENCODE Processing Pipeline e2fa93e5e99e61d33ae741fd8796fbf1 https://www.encodeproject.org/files/ENCFF657MVE/@@download/ENCFF657MVE.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF680KWZ bed narrowPeak peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF341IVK, ENCFF618UUW 4561064 ENCODE Processing Pipeline 68fe882c5ce120b994b2b5c3d706bb16 https://www.encodeproject.org/files/ENCFF680KWZ/@@download/ENCFF680KWZ.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF904USP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF419RSJ, ENCFF680KWZ 105915 ENCODE Processing Pipeline eb6e32f5032443ea68b3fa02441588eb https://www.encodeproject.org/files/ENCFF904USP/@@download/ENCFF904USP.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF559PZT bigWig signal p-value ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF341IVK, ENCFF618UUW 426152367 ENCODE Processing Pipeline 8eb9358dbd37edbba2310662a2d15e1e https://www.encodeproject.org/files/ENCFF559PZT/@@download/ENCFF559PZT.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF735ASE bigWig fold change over control ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF341IVK, ENCFF618UUW 408547147 ENCODE Processing Pipeline 16ce5413c0aa5d2b42bf173535bfbc92 https://www.encodeproject.org/files/ENCFF735ASE/@@download/ENCFF735ASE.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF362UPL bigBed narrowPeak peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF680KWZ 11045194 ENCODE Processing Pipeline b7c60dcdd5f68fe36042e22aeec5b0f9 https://www.encodeproject.org/files/ENCFF362UPL/@@download/ENCFF362UPL.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF791MFC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF904USP 242077 ENCODE Processing Pipeline e129c2357830f338f4c91eca044f9171 https://www.encodeproject.org/files/ENCFF791MFC/@@download/ENCFF791MFC.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF260ITV bam unfiltered alignments ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 50 ENCFF433MXK, ENCFF807MUK 1206525163 ENCODE Processing Pipeline 18d7f1e3e4d7169c2388fde5dc8c019b https://www.encodeproject.org/files/ENCFF260ITV/@@download/ENCFF260ITV.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF433MXK fastq reads ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 1 50 single-ended 1078625236 Richard Myers, HAIB e24f5c7d21b8ce7b6d3ed4be20e8d03a https://www.encodeproject.org/files/ENCFF433MXK/@@download/ENCFF433MXK.fastq.gz Illumina HiSeq 2000 /files/ENCFF252PYF/ released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF931MGR bam alignments ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF433MXK, ENCFF807MUK 914824159 ENCODE Processing Pipeline 702c49382d21e87f0cf0605015dcae48 https://www.encodeproject.org/files/ENCFF931MGR/@@download/ENCFF931MGR.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF903GCS bam unfiltered alignments ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 50 ENCFF433MXK, ENCFF643CGH 1208761829 ENCODE Processing Pipeline 0b65e8c7d7896be73cf02ee6b4a59b43 https://www.encodeproject.org/files/ENCFF903GCS/@@download/ENCFF903GCS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF618UUW bam alignments ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 50 ENCFF433MXK, ENCFF643CGH 914702306 ENCODE Processing Pipeline 12da53db6f6fc733860c6c6aef15ab8a https://www.encodeproject.org/files/ENCFF618UUW/@@download/ENCFF618UUW.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF205PYK bed narrowPeak peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF931MGR, ENCFF956QBZ 4564076 ENCODE Processing Pipeline da0cef82e0ce1a7837c392c184a983d3 https://www.encodeproject.org/files/ENCFF205PYK/@@download/ENCFF205PYK.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF284HPQ bigBed narrowPeak peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF205PYK 11049463 ENCODE Processing Pipeline c1c8323d51f01f0b674add23793b84a1 https://www.encodeproject.org/files/ENCFF284HPQ/@@download/ENCFF284HPQ.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF287XUB bigWig signal p-value ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF931MGR, ENCFF956QBZ 583390777 ENCODE Processing Pipeline 3906c6b21a1daac2c529df3dcbbd8787 https://www.encodeproject.org/files/ENCFF287XUB/@@download/ENCFF287XUB.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF091AXS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF238TOS 240755 ENCODE Processing Pipeline 704fde853050fe4c34c8b0769759c464 https://www.encodeproject.org/files/ENCFF091AXS/@@download/ENCFF091AXS.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF647BAW bigWig fold change over control ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF931MGR, ENCFF956QBZ 406638564 ENCODE Processing Pipeline ae90983b6dd6dcf44ce4878a05d6c58a https://www.encodeproject.org/files/ENCFF647BAW/@@download/ENCFF647BAW.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF238TOS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF001TDO, ENCFF205PYK 104785 ENCODE Processing Pipeline 3692525240bfa691c4fbdba0c7854ada https://www.encodeproject.org/files/ENCFF238TOS/@@download/ENCFF238TOS.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF430OXE bam unfiltered alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF272CZX, ENCFF738QTE, ENCFF807MUK 4404438924 ENCODE Processing Pipeline b9bac91e39b8a8772e683c86f5fc1912 https://www.encodeproject.org/files/ENCFF430OXE/@@download/ENCFF430OXE.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF085YOW bam unfiltered alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF152QAM, ENCFF251YCF, ENCFF807MUK 4290913360 ENCODE Processing Pipeline a1b04a19b0ff867715c7925dbd5301bf https://www.encodeproject.org/files/ENCFF085YOW/@@download/ENCFF085YOW.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF251YCF fastq reads ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF152QAM 1906442086 Michael Snyder, Stanford cae6dc953852ba15cb9e7567495c9d80 https://www.encodeproject.org/files/ENCFF251YCF/@@download/ENCFF251YCF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released experiment not submitted to GEO partially characterized antibody ENCFF272CZX fastq reads ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF738QTE 2016988292 Michael Snyder, Stanford ab73c1edc8dc88a4a2ac7f5aba64904c https://www.encodeproject.org/files/ENCFF272CZX/@@download/ENCFF272CZX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released experiment not submitted to GEO partially characterized antibody ENCFF152QAM fastq reads ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF251YCF 1959736246 Michael Snyder, Stanford 3336d3f9c280bdd21d88ace69bcf0f32 https://www.encodeproject.org/files/ENCFF152QAM/@@download/ENCFF152QAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released experiment not submitted to GEO partially characterized antibody ENCFF738QTE fastq reads ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF272CZX 1965937450 Michael Snyder, Stanford bab7389f3949f560fdc406c987be7114 https://www.encodeproject.org/files/ENCFF738QTE/@@download/ENCFF738QTE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released experiment not submitted to GEO partially characterized antibody ENCFF966KGE bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF272CZX, ENCFF738QTE, ENCFF807MUK 3673118268 ENCODE Processing Pipeline 35058e1673487dc9115e49dda3fd39b1 https://www.encodeproject.org/files/ENCFF966KGE/@@download/ENCFF966KGE.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF606MZP bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF152QAM, ENCFF251YCF, ENCFF807MUK 3554519636 ENCODE Processing Pipeline 0132486641e0cec2bac7abec18093874 https://www.encodeproject.org/files/ENCFF606MZP/@@download/ENCFF606MZP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF945CEV bigWig signal p-value ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF966KGE 811907969 ENCODE Processing Pipeline 8323f858aa16483dcdb2ff409b88a7d8 https://www.encodeproject.org/files/ENCFF945CEV/@@download/ENCFF945CEV.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF941VIO bigWig signal p-value ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF583FAG, ENCFF606MZP 849006137 ENCODE Processing Pipeline f7ed7310eab31b77f274975e4b7b30eb https://www.encodeproject.org/files/ENCFF941VIO/@@download/ENCFF941VIO.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF588YNB bigWig signal p-value ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF583FAG, ENCFF606MZP, ENCFF966KGE 1259021152 ENCODE Processing Pipeline 1730a3b054249f4934e36296a887c6bc https://www.encodeproject.org/files/ENCFF588YNB/@@download/ENCFF588YNB.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF936LKT bigWig fold change over control ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF966KGE 1011693423 ENCODE Processing Pipeline 768706d5568e6c6e1f58fbea20b2aa8c https://www.encodeproject.org/files/ENCFF936LKT/@@download/ENCFF936LKT.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF303WKO bigWig fold change over control ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF583FAG, ENCFF606MZP 973395186 ENCODE Processing Pipeline 296fed27e70852b05d6e3f0bc57dccf5 https://www.encodeproject.org/files/ENCFF303WKO/@@download/ENCFF303WKO.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF186VUM bigWig fold change over control ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF583FAG, ENCFF606MZP, ENCFF966KGE 1491779198 ENCODE Processing Pipeline 790c7f098d39aaa3d534dac9ebe74856 https://www.encodeproject.org/files/ENCFF186VUM/@@download/ENCFF186VUM.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF226PXS bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF966KGE 6030845 ENCODE Processing Pipeline 5e05072604fd7ecf5cbbaeaa3bbf5a07 https://www.encodeproject.org/files/ENCFF226PXS/@@download/ENCFF226PXS.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF927HIC bigBed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF226PXS 11142938 ENCODE Processing Pipeline 97ab7e5d69f4a5f1bf7bf199f9118e39 https://www.encodeproject.org/files/ENCFF927HIC/@@download/ENCFF927HIC.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF262ETY bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF583FAG, ENCFF606MZP 5884663 ENCODE Processing Pipeline d507c4a30f1faea190971029240013df https://www.encodeproject.org/files/ENCFF262ETY/@@download/ENCFF262ETY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF093MAU bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF583FAG, ENCFF606MZP, ENCFF966KGE 6905621 ENCODE Processing Pipeline b97adff634993ea2e2e12c8ecf8f4610 https://www.encodeproject.org/files/ENCFF093MAU/@@download/ENCFF093MAU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF019ZGI bigBed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF262ETY 11149834 ENCODE Processing Pipeline e5f38e0e9224d97e123114b5c64247bb https://www.encodeproject.org/files/ENCFF019ZGI/@@download/ENCFF019ZGI.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF360LVH bigBed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF093MAU 11019079 ENCODE Processing Pipeline 96a2f140aa6516d1bb715d3d08c494e3 https://www.encodeproject.org/files/ENCFF360LVH/@@download/ENCFF360LVH.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF031SZJ bed narrowPeak conservative idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF093MAU, ENCFF226PXS, ENCFF262ETY 29863 ENCODE Processing Pipeline 4cc9bcc089969015dc59c7ab4afb04e8 https://www.encodeproject.org/files/ENCFF031SZJ/@@download/ENCFF031SZJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF989JGE bigBed narrowPeak optimal idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF751DRF 141253 ENCODE Processing Pipeline 9c180b8e66ad043472ff790c006ee50f https://www.encodeproject.org/files/ENCFF989JGE/@@download/ENCFF989JGE.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF974JGO bigBed narrowPeak conservative idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF031SZJ 116255 ENCODE Processing Pipeline bb2db8d137f0acd46dc43bdbb4c44b4a https://www.encodeproject.org/files/ENCFF974JGO/@@download/ENCFF974JGO.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF751DRF bed narrowPeak optimal idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF093MAU, ENCFF226PXS, ENCFF262ETY 45000 ENCODE Processing Pipeline c3e581d5c27bb0218e2a3c4578ef20bf https://www.encodeproject.org/files/ENCFF751DRF/@@download/ENCFF751DRF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF787GDV bam unfiltered alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF152QAM, ENCFF251YCF, ENCFF643CGH 4299599045 ENCODE Processing Pipeline a7bba576c0afbf7f453011d16335dfba https://www.encodeproject.org/files/ENCFF787GDV/@@download/ENCFF787GDV.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF257GMW bam unfiltered alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF272CZX, ENCFF643CGH, ENCFF738QTE 4413123820 ENCODE Processing Pipeline 4b2d32b7dc6e77f63a2a13862658fc4a https://www.encodeproject.org/files/ENCFF257GMW/@@download/ENCFF257GMW.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF998TMI bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF152QAM, ENCFF251YCF, ENCFF643CGH 3557628533 ENCODE Processing Pipeline 48562ebb234d93795e29900fed3c9254 https://www.encodeproject.org/files/ENCFF998TMI/@@download/ENCFF998TMI.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF758PTP bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF272CZX, ENCFF643CGH, ENCFF738QTE 3676617244 ENCODE Processing Pipeline 56cae9e7e9dd5fcafb9240cbd4aa01ff https://www.encodeproject.org/files/ENCFF758PTP/@@download/ENCFF758PTP.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF694UQS bigWig signal p-value ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF758PTP 960418490 ENCODE Processing Pipeline 9f5fdb42589bf423a5a1e025732ab3e0 https://www.encodeproject.org/files/ENCFF694UQS/@@download/ENCFF694UQS.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF377YVL bigWig signal p-value ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF426RDP, ENCFF998TMI 1092775471 ENCODE Processing Pipeline 793f4e3592462a9eabc67fba85e3dcfd https://www.encodeproject.org/files/ENCFF377YVL/@@download/ENCFF377YVL.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF438OTZ bigWig signal p-value ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF426RDP, ENCFF758PTP, ENCFF998TMI 1261547307 ENCODE Processing Pipeline bbe4da9a709a597040b6bcbae7cf62c7 https://www.encodeproject.org/files/ENCFF438OTZ/@@download/ENCFF438OTZ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF411XCB bigWig fold change over control ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF758PTP 1013539798 ENCODE Processing Pipeline 05e609b3bd251b14f6531d07cd11d7dd https://www.encodeproject.org/files/ENCFF411XCB/@@download/ENCFF411XCB.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF286EPT bigWig fold change over control ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF426RDP, ENCFF998TMI 1010496124 ENCODE Processing Pipeline bb9f3fe46553a84939b4020d0ffecbff https://www.encodeproject.org/files/ENCFF286EPT/@@download/ENCFF286EPT.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF496QAX bigWig fold change over control ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF426RDP, ENCFF758PTP, ENCFF998TMI 1496522056 ENCODE Processing Pipeline 60f79bd381955047f39ed375bd586b81 https://www.encodeproject.org/files/ENCFF496QAX/@@download/ENCFF496QAX.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF906OCJ bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF426RDP, ENCFF998TMI 5748009 ENCODE Processing Pipeline ec33fc128a59a75900147b02a1bec52a https://www.encodeproject.org/files/ENCFF906OCJ/@@download/ENCFF906OCJ.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF687SBJ bigBed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF906OCJ 11147384 ENCODE Processing Pipeline 1261f9d953f8382e9f6c623f1390b19e https://www.encodeproject.org/files/ENCFF687SBJ/@@download/ENCFF687SBJ.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF591LPD bigBed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF516BGW 11028764 ENCODE Processing Pipeline dd40a47d8c516ef699c9bf9e6726b1fd https://www.encodeproject.org/files/ENCFF591LPD/@@download/ENCFF591LPD.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF348NGT bigBed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF465YLK 11142775 ENCODE Processing Pipeline 56951c040cac52531e4a8b5e429efc2b https://www.encodeproject.org/files/ENCFF348NGT/@@download/ENCFF348NGT.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF516BGW bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF426RDP, ENCFF758PTP, ENCFF998TMI 6779009 ENCODE Processing Pipeline e83726f4ddc0510d1c160ddc97ef9ebb https://www.encodeproject.org/files/ENCFF516BGW/@@download/ENCFF516BGW.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF072VGV bed narrowPeak optimal idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF465YLK, ENCFF516BGW, ENCFF906OCJ 46328 ENCODE Processing Pipeline f297e9500dfcca8424450fba453e48d5 https://www.encodeproject.org/files/ENCFF072VGV/@@download/ENCFF072VGV.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF757KVL bigBed narrowPeak optimal idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF072VGV 145173 ENCODE Processing Pipeline e43ba24ebd97e5435657c47660811f6b https://www.encodeproject.org/files/ENCFF757KVL/@@download/ENCFF757KVL.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF465YLK bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF758PTP 5892160 ENCODE Processing Pipeline 8b9ca319e7f07937ea6fb297a230dde3 https://www.encodeproject.org/files/ENCFF465YLK/@@download/ENCFF465YLK.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF779WEL bed narrowPeak conservative idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF465YLK, ENCFF516BGW, ENCFF906OCJ 29772 ENCODE Processing Pipeline 25d7d55ebd973002f28f98a382d27a4c https://www.encodeproject.org/files/ENCFF779WEL/@@download/ENCFF779WEL.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF929MOR bigBed narrowPeak conservative idr thresholded peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF779WEL 117080 ENCODE Processing Pipeline 8430c36b5b778d5440b55d5ff915758a https://www.encodeproject.org/files/ENCFF929MOR/@@download/ENCFF929MOR.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF176QOJ fastq reads ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF677QBQ 1820238638 Michael Snyder, Stanford 3cdf7b18b4a07507e811441ed668476b SRA:SRR5111226 https://www.encodeproject.org/files/ENCFF176QOJ/@@download/ENCFF176QOJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF436WRK fastq reads ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF198ZVP 2096566324 Michael Snyder, Stanford 57d2a10ac6e8ad923c4bfc464fe467af SRA:SRR5111225 https://www.encodeproject.org/files/ENCFF436WRK/@@download/ENCFF436WRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF198ZVP fastq reads ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF436WRK 2101767243 Michael Snyder, Stanford 65790ae73cb190b97c462a07f8910d59 SRA:SRR5111225 https://www.encodeproject.org/files/ENCFF198ZVP/@@download/ENCFF198ZVP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF677QBQ fastq reads ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF176QOJ 1857808003 Michael Snyder, Stanford 8426a8eab1140477f00e06885ad382e2 SRA:SRR5111226 https://www.encodeproject.org/files/ENCFF677QBQ/@@download/ENCFF677QBQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF653DEE bam unfiltered alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF176QOJ, ENCFF643CGH, ENCFF677QBQ 4063472178 ENCODE Processing Pipeline 2439fb42210efd42356cd9bd20f8cc44 https://www.encodeproject.org/files/ENCFF653DEE/@@download/ENCFF653DEE.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF012WDB bam unfiltered alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF198ZVP, ENCFF436WRK, ENCFF807MUK 4627190933 ENCODE Processing Pipeline 6d4cbd0044c60c9b156fc9b1c02109b5 https://www.encodeproject.org/files/ENCFF012WDB/@@download/ENCFF012WDB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF770AZF bam unfiltered alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF176QOJ, ENCFF677QBQ, ENCFF807MUK 4059581604 ENCODE Processing Pipeline 512fa9aec1e62a5ecfad2ada4a576794 https://www.encodeproject.org/files/ENCFF770AZF/@@download/ENCFF770AZF.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF653XKX bam unfiltered alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF198ZVP, ENCFF436WRK, ENCFF643CGH 4630846360 ENCODE Processing Pipeline c2751aaeb521f66dfca68d50bf01f914 https://www.encodeproject.org/files/ENCFF653XKX/@@download/ENCFF653XKX.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF219EYD bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF176QOJ, ENCFF643CGH, ENCFF677QBQ 3550432090 ENCODE Processing Pipeline cb45f63d75b521410ff3b09e793309c3 https://www.encodeproject.org/files/ENCFF219EYD/@@download/ENCFF219EYD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF707OMI bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF176QOJ, ENCFF677QBQ, ENCFF807MUK 3550287306 ENCODE Processing Pipeline 948fb7a57b801714a2632faf8aa9f731 https://www.encodeproject.org/files/ENCFF707OMI/@@download/ENCFF707OMI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF512NLI bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF198ZVP, ENCFF436WRK, ENCFF807MUK 3997507732 ENCODE Processing Pipeline e3bbce0bed4ee8dd66bb57be3f1a2fdc https://www.encodeproject.org/files/ENCFF512NLI/@@download/ENCFF512NLI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF481VHV bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF198ZVP, ENCFF436WRK, ENCFF643CGH 3998197017 ENCODE Processing Pipeline e2f40332d77140646a8a60030071cbce https://www.encodeproject.org/files/ENCFF481VHV/@@download/ENCFF481VHV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF863FWC bigWig signal p-value ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF512NLI 1351522056 ENCODE Processing Pipeline c97668237844d32cce02deed209f1a40 https://www.encodeproject.org/files/ENCFF863FWC/@@download/ENCFF863FWC.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF061ARJ bigWig signal p-value ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF707OMI 1291300743 ENCODE Processing Pipeline 701f7194f2f3cbdb0cd493c120a8ac0e https://www.encodeproject.org/files/ENCFF061ARJ/@@download/ENCFF061ARJ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF851HEA bigWig signal p-value ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF512NLI, ENCFF707OMI 1709957652 ENCODE Processing Pipeline dbdf59b0ed93357e98710e9f3c235d97 https://www.encodeproject.org/files/ENCFF851HEA/@@download/ENCFF851HEA.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF856HFS bigWig fold change over control ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF512NLI 1288792050 ENCODE Processing Pipeline c0aaee008f84906b399d4e438b2455ff https://www.encodeproject.org/files/ENCFF856HFS/@@download/ENCFF856HFS.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF851EAQ bigWig fold change over control ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF707OMI 1228870478 ENCODE Processing Pipeline 3bf5fac57061b1f6d39540510d15c03e https://www.encodeproject.org/files/ENCFF851EAQ/@@download/ENCFF851EAQ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF920UUD bigWig fold change over control ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF512NLI, ENCFF707OMI 1813155177 ENCODE Processing Pipeline 1e25515e22da7053274de97d73d7fd31 https://www.encodeproject.org/files/ENCFF920UUD/@@download/ENCFF920UUD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF747KPL bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF512NLI 6964064 ENCODE Processing Pipeline 5aaa1597e639748756e28dfa745c3ca6 https://www.encodeproject.org/files/ENCFF747KPL/@@download/ENCFF747KPL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF431WDE bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF707OMI 6870839 ENCODE Processing Pipeline e5fc1c2d917cf2a5d2c048a646dec6aa https://www.encodeproject.org/files/ENCFF431WDE/@@download/ENCFF431WDE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF615MVD bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF512NLI, ENCFF707OMI 7215868 ENCODE Processing Pipeline 5a1bfb10283d75c59f23c20ec1119509 https://www.encodeproject.org/files/ENCFF615MVD/@@download/ENCFF615MVD.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF302HZY bigBed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF747KPL 13359334 ENCODE Processing Pipeline 322a15583b6c7122d5d6da33dd5cef5a https://www.encodeproject.org/files/ENCFF302HZY/@@download/ENCFF302HZY.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF109HQB bigBed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF431WDE 13447481 ENCODE Processing Pipeline 3d8af9403c7a03b5409a39734974dde3 https://www.encodeproject.org/files/ENCFF109HQB/@@download/ENCFF109HQB.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF681NYX bed narrowPeak conservative idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF431WDE, ENCFF615MVD, ENCFF747KPL 671207 ENCODE Processing Pipeline 158c8f083c97b83a6023b57b4a197559 https://www.encodeproject.org/files/ENCFF681NYX/@@download/ENCFF681NYX.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF943TUH bigBed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF615MVD 13309876 ENCODE Processing Pipeline cac3c145a5fd26ae84a35dc60bf17994 https://www.encodeproject.org/files/ENCFF943TUH/@@download/ENCFF943TUH.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF150HGM bigBed narrowPeak conservative idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF681NYX 1542045 ENCODE Processing Pipeline 690bae5d2cbaa73eff12a82ab9e55fe4 https://www.encodeproject.org/files/ENCFF150HGM/@@download/ENCFF150HGM.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF923HBZ bigBed narrowPeak optimal idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF901JLS 1635053 ENCODE Processing Pipeline 88a0d4c53d70d78730813528032d72af https://www.encodeproject.org/files/ENCFF923HBZ/@@download/ENCFF923HBZ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF901JLS bed narrowPeak optimal idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF431WDE, ENCFF615MVD, ENCFF747KPL 718637 ENCODE Processing Pipeline 73c507dbf8f91c8da842a5f5aab53303 https://www.encodeproject.org/files/ENCFF901JLS/@@download/ENCFF901JLS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF770OSZ bigWig signal p-value ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF481VHV 1129600915 ENCODE Processing Pipeline ed84b97bf92b89be926cf5919619fe3c https://www.encodeproject.org/files/ENCFF770OSZ/@@download/ENCFF770OSZ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF587VYD bigWig signal p-value ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF219EYD 1168140217 ENCODE Processing Pipeline f68c9d1056abe76b11c96339a9fb87ea https://www.encodeproject.org/files/ENCFF587VYD/@@download/ENCFF587VYD.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF269HYW bigWig signal p-value ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF219EYD, ENCFF481VHV 1333699540 ENCODE Processing Pipeline e09700e7b8ce754b34194168d37a32aa https://www.encodeproject.org/files/ENCFF269HYW/@@download/ENCFF269HYW.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF993OLB bigWig fold change over control ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF481VHV 1301406867 ENCODE Processing Pipeline 0f97873806d053309a034ada1496f936 https://www.encodeproject.org/files/ENCFF993OLB/@@download/ENCFF993OLB.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF868ZYE bigWig fold change over control ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF219EYD 1218574612 ENCODE Processing Pipeline ca9bf678cb17324024fbd3034d09024c https://www.encodeproject.org/files/ENCFF868ZYE/@@download/ENCFF868ZYE.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF333IRA bigWig fold change over control ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF219EYD, ENCFF481VHV 1813291510 ENCODE Processing Pipeline a03f31c120ac66c027c7fd9dbfe4c2f0 https://www.encodeproject.org/files/ENCFF333IRA/@@download/ENCFF333IRA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF555ZSX bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF481VHV 6913676 ENCODE Processing Pipeline 9dbb5f93eefb8b64d3fd0003d753cda5 https://www.encodeproject.org/files/ENCFF555ZSX/@@download/ENCFF555ZSX.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF604IFM bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF219EYD 6769945 ENCODE Processing Pipeline 8ef28aefa716c635fa2cc41afea3301c https://www.encodeproject.org/files/ENCFF604IFM/@@download/ENCFF604IFM.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF003ZGQ bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF219EYD, ENCFF481VHV 7186681 ENCODE Processing Pipeline 44c46f4cb35613ea954c65fbfbfe79cb https://www.encodeproject.org/files/ENCFF003ZGQ/@@download/ENCFF003ZGQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF130VOX bigBed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF003ZGQ 13310125 ENCODE Processing Pipeline 2d6cc56bc5c9d13f3cfbb74e20947ca4 https://www.encodeproject.org/files/ENCFF130VOX/@@download/ENCFF130VOX.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF639SOF bed narrowPeak conservative idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF003ZGQ, ENCFF419RSJ, ENCFF555ZSX, ENCFF604IFM 667558 ENCODE Processing Pipeline fb61e41d4dc9b84aa68714b7a652cbb8 https://www.encodeproject.org/files/ENCFF639SOF/@@download/ENCFF639SOF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF177UUV bigBed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF555ZSX 13416186 ENCODE Processing Pipeline 1fe7aa10d0e4ea33dc875ef7b0313239 https://www.encodeproject.org/files/ENCFF177UUV/@@download/ENCFF177UUV.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF577FDT bigBed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF604IFM 13452980 ENCODE Processing Pipeline 0ae40218419de7cc8c624b894c76e905 https://www.encodeproject.org/files/ENCFF577FDT/@@download/ENCFF577FDT.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF357GBQ bigBed narrowPeak conservative idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF639SOF 1539189 ENCODE Processing Pipeline 51222ecab676ef4de0d5f690e4afe169 https://www.encodeproject.org/files/ENCFF357GBQ/@@download/ENCFF357GBQ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF994PZP bigBed narrowPeak optimal idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF482CYW 1635162 ENCODE Processing Pipeline 2175afc808a4675d9b2121273db078f0 https://www.encodeproject.org/files/ENCFF994PZP/@@download/ENCFF994PZP.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF482CYW bed narrowPeak optimal idr thresholded peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF003ZGQ, ENCFF419RSJ, ENCFF555ZSX, ENCFF604IFM 717337 ENCODE Processing Pipeline 4a26a2518c835d0b67b6b3d4a498a387 https://www.encodeproject.org/files/ENCFF482CYW/@@download/ENCFF482CYW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF863CUG bam unfiltered alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 100 ENCFF389LWM, ENCFF807MUK, ENCFF878ZAA 4337518963 ENCODE Processing Pipeline 78d55f44de161c91f6b224a3d740ca87 https://www.encodeproject.org/files/ENCFF863CUG/@@download/ENCFF863CUG.bam hg19 released low read depth experiment not submitted to GEO ENCFF878ZAA fastq reads ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 2 ENCFF389LWM 1977695418 Michael Snyder, Stanford 2948b58b9c0d4e300500460549fe3dca https://www.encodeproject.org/files/ENCFF878ZAA/@@download/ENCFF878ZAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth experiment not submitted to GEO ENCFF389LWM fastq reads ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 1 100 paired-ended 1 ENCFF878ZAA 1939918841 Michael Snyder, Stanford 74b66e0216a34497470efa83f994a6c1 https://www.encodeproject.org/files/ENCFF389LWM/@@download/ENCFF389LWM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth experiment not submitted to GEO ENCFF537OYZ bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 100 ENCFF389LWM, ENCFF807MUK, ENCFF878ZAA 3546713231 ENCODE Processing Pipeline 95dc36e9e0006d63fc331eec778476d6 https://www.encodeproject.org/files/ENCFF537OYZ/@@download/ENCFF537OYZ.bam hg19 released low read depth experiment not submitted to GEO ENCFF745JUW fastq reads ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 1 ENCFF273PTZ 3729633149 Michael Snyder, Stanford 356581762f50a9a1fccad26266a8a47e https://www.encodeproject.org/files/ENCFF745JUW/@@download/ENCFF745JUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth experiment not submitted to GEO ENCFF273PTZ fastq reads ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 1 101 paired-ended 2 ENCFF745JUW 3721536401 Michael Snyder, Stanford 4355f9830d0682711912405d4f2e3dde https://www.encodeproject.org/files/ENCFF273PTZ/@@download/ENCFF273PTZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth experiment not submitted to GEO ENCFF300MIW bam unfiltered alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 100 ENCFF389LWM, ENCFF643CGH, ENCFF878ZAA 4343437997 ENCODE Processing Pipeline c8b3be0bf966a5e1006a1663a65e03d4 https://www.encodeproject.org/files/ENCFF300MIW/@@download/ENCFF300MIW.bam GRCh38 released low read depth experiment not submitted to GEO ENCFF638KFU bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 100 ENCFF389LWM, ENCFF643CGH, ENCFF878ZAA 3551050507 ENCODE Processing Pipeline 9e3b3635a0c74f9ba63afb45bfdf3c6d https://www.encodeproject.org/files/ENCFF638KFU/@@download/ENCFF638KFU.bam GRCh38 released low read depth experiment not submitted to GEO ENCFF550FBR bam unfiltered alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF273PTZ, ENCFF745JUW, ENCFF807MUK 7112478300 ENCODE Processing Pipeline 11993ccd6b10720300d527679994b736 https://www.encodeproject.org/files/ENCFF550FBR/@@download/ENCFF550FBR.bam hg19 released low read depth experiment not submitted to GEO ENCFF333ULF bam unfiltered alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF273PTZ, ENCFF643CGH, ENCFF745JUW 7120809604 ENCODE Processing Pipeline 9b71c813bc585ec5a43868b02e4d6b8e https://www.encodeproject.org/files/ENCFF333ULF/@@download/ENCFF333ULF.bam GRCh38 released low read depth experiment not submitted to GEO ENCFF592CXW bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF273PTZ, ENCFF745JUW, ENCFF807MUK 6171928984 ENCODE Processing Pipeline b70d001a74e212ef43db837140333dee https://www.encodeproject.org/files/ENCFF592CXW/@@download/ENCFF592CXW.bam hg19 released low read depth experiment not submitted to GEO ENCFF411GKL bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF273PTZ, ENCFF643CGH, ENCFF745JUW 6173189255 ENCODE Processing Pipeline ccf1217f2c30b7b4ce84734a30c04ed8 https://www.encodeproject.org/files/ENCFF411GKL/@@download/ENCFF411GKL.bam GRCh38 released low read depth experiment not submitted to GEO ENCFF658FTO bigBed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF408WGV 11219549 ENCODE Processing Pipeline de296bfe05e405111a4a22588f3f1745 https://www.encodeproject.org/files/ENCFF658FTO/@@download/ENCFF658FTO.bigBed GRCh38 released low read depth experiment not submitted to GEO ENCFF460ZTX bigBed narrowPeak conservative idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF146FGH 202342 ENCODE Processing Pipeline 3de2f68bc8ebf1b706f1342339c791d8 https://www.encodeproject.org/files/ENCFF460ZTX/@@download/ENCFF460ZTX.bigBed GRCh38 released low read depth experiment not submitted to GEO ENCFF267XOA bigWig signal p-value ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF411GKL, ENCFF638KFU, ENCFF910IKB 1894201788 ENCODE Processing Pipeline e23b87c43df04e208316b037d344041d https://www.encodeproject.org/files/ENCFF267XOA/@@download/ENCFF267XOA.bigWig GRCh38 released low read depth experiment not submitted to GEO ENCFF776LMR bigBed narrowPeak optimal idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF919KNQ 275483 ENCODE Processing Pipeline 4bb883eaa6a138c845532b2464b13919 https://www.encodeproject.org/files/ENCFF776LMR/@@download/ENCFF776LMR.bigBed GRCh38 released low read depth experiment not submitted to GEO ENCFF076DCA bigWig signal p-value ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF638KFU, ENCFF910IKB 1111255694 ENCODE Processing Pipeline 0175c424c87d4055366f02d5c577d03a https://www.encodeproject.org/files/ENCFF076DCA/@@download/ENCFF076DCA.bigWig GRCh38 released low read depth experiment not submitted to GEO ENCFF126LQE bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF411GKL, ENCFF638KFU, ENCFF910IKB 7150844 ENCODE Processing Pipeline 98e3b60f8451b79717661d56c3978b8e https://www.encodeproject.org/files/ENCFF126LQE/@@download/ENCFF126LQE.bed.gz GRCh38 released low read depth experiment not submitted to GEO ENCFF851ZVQ bigWig signal p-value ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF411GKL, ENCFF910IKB 1627874801 ENCODE Processing Pipeline a9d5ed736fbd96d9ad3b518ba240823b https://www.encodeproject.org/files/ENCFF851ZVQ/@@download/ENCFF851ZVQ.bigWig GRCh38 released low read depth experiment not submitted to GEO ENCFF919KNQ bed narrowPeak optimal idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF126LQE, ENCFF408WGV, ENCFF419RSJ, ENCFF667XAA 127271 ENCODE Processing Pipeline ed5c069351774948a45f219c7d43c0ae https://www.encodeproject.org/files/ENCFF919KNQ/@@download/ENCFF919KNQ.bed.gz GRCh38 released low read depth experiment not submitted to GEO ENCFF478HTH bigWig fold change over control ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF638KFU, ENCFF910IKB 1082961155 ENCODE Processing Pipeline e5b47b2627f05d2ad3a9550ab86d8060 https://www.encodeproject.org/files/ENCFF478HTH/@@download/ENCFF478HTH.bigWig GRCh38 released low read depth experiment not submitted to GEO ENCFF354ZUG bigWig fold change over control ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF411GKL, ENCFF910IKB 1907727783 ENCODE Processing Pipeline b9ccc99d114d81b0ccec3cc31d3bbfa3 https://www.encodeproject.org/files/ENCFF354ZUG/@@download/ENCFF354ZUG.bigWig GRCh38 released low read depth experiment not submitted to GEO ENCFF819HQT bigWig fold change over control ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF227IZS, ENCFF411GKL, ENCFF638KFU, ENCFF910IKB 2232329660 ENCODE Processing Pipeline dd5edefa388cd93b2c6f40dc01582d35 https://www.encodeproject.org/files/ENCFF819HQT/@@download/ENCFF819HQT.bigWig GRCh38 released low read depth experiment not submitted to GEO ENCFF667XAA bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF638KFU, ENCFF910IKB 6110032 ENCODE Processing Pipeline e24be2297121da94f29c2b760f3786e5 https://www.encodeproject.org/files/ENCFF667XAA/@@download/ENCFF667XAA.bed.gz GRCh38 released low read depth experiment not submitted to GEO ENCFF408WGV bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF227IZS, ENCFF411GKL, ENCFF910IKB 6878567 ENCODE Processing Pipeline 45780eb7b5c67638d88290c9ca8b074b https://www.encodeproject.org/files/ENCFF408WGV/@@download/ENCFF408WGV.bed.gz GRCh38 released low read depth experiment not submitted to GEO ENCFF617YBX bigBed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF667XAA 11287615 ENCODE Processing Pipeline ecb5c47412973ec28c30e5d99dd8a9e7 https://www.encodeproject.org/files/ENCFF617YBX/@@download/ENCFF617YBX.bigBed GRCh38 released low read depth experiment not submitted to GEO ENCFF126WRM bigBed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF126LQE 13247091 ENCODE Processing Pipeline 012b4209d628858ef4307d1ee179eeaf https://www.encodeproject.org/files/ENCFF126WRM/@@download/ENCFF126WRM.bigBed GRCh38 released low read depth experiment not submitted to GEO ENCFF146FGH bed narrowPeak conservative idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF126LQE, ENCFF408WGV, ENCFF419RSJ, ENCFF667XAA 79386 ENCODE Processing Pipeline 8f602afac6504f78773b50e2aa11eb91 https://www.encodeproject.org/files/ENCFF146FGH/@@download/ENCFF146FGH.bed.gz GRCh38 released low read depth experiment not submitted to GEO ENCFF689MDM bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF537OYZ, ENCFF581ZJL 6112109 ENCODE Processing Pipeline ba9ba9833b4606e9d3debe09a73a6551 https://www.encodeproject.org/files/ENCFF689MDM/@@download/ENCFF689MDM.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF131TQV bed narrowPeak conservative idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF363BOT, ENCFF553YOE, ENCFF689MDM 79082 ENCODE Processing Pipeline c07f7bfa27009dfa7107bf7e38680350 https://www.encodeproject.org/files/ENCFF131TQV/@@download/ENCFF131TQV.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF991BTH bigWig signal p-value ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF581ZJL, ENCFF592CXW 1847690633 ENCODE Processing Pipeline 9046ebcccfda44041e81e29438c87662 https://www.encodeproject.org/files/ENCFF991BTH/@@download/ENCFF991BTH.bigWig hg19 released low read depth experiment not submitted to GEO ENCFF123PMM bigBed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF689MDM 11273502 ENCODE Processing Pipeline 7e940803583961cab49719ce8a2b446c https://www.encodeproject.org/files/ENCFF123PMM/@@download/ENCFF123PMM.bigBed hg19 released low read depth experiment not submitted to GEO ENCFF553YOE bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF581ZJL, ENCFF592CXW 6877299 ENCODE Processing Pipeline 2122823fc7452aab434f82f1125070f4 https://www.encodeproject.org/files/ENCFF553YOE/@@download/ENCFF553YOE.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF448WLP bigBed narrowPeak conservative idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF131TQV 201666 ENCODE Processing Pipeline ffc34a214d5179fa2f18ace43e2eb83d https://www.encodeproject.org/files/ENCFF448WLP/@@download/ENCFF448WLP.bigBed hg19 released low read depth experiment not submitted to GEO ENCFF255EIV bigBed narrowPeak optimal idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF602FRL 276384 ENCODE Processing Pipeline c4ac2f5b41c0144a8367cf5a4bf7fe61 https://www.encodeproject.org/files/ENCFF255EIV/@@download/ENCFF255EIV.bigBed hg19 released low read depth experiment not submitted to GEO ENCFF813SYI bigWig signal p-value ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF537OYZ, ENCFF581ZJL, ENCFF592CXW 1949089528 ENCODE Processing Pipeline 21ac93d4b45f3eacf007ce80c4511538 https://www.encodeproject.org/files/ENCFF813SYI/@@download/ENCFF813SYI.bigWig hg19 released low read depth experiment not submitted to GEO ENCFF895DYF bigWig fold change over control ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF581ZJL, ENCFF592CXW 1885111580 ENCODE Processing Pipeline 797005369d3596cfe6962b110086f441 https://www.encodeproject.org/files/ENCFF895DYF/@@download/ENCFF895DYF.bigWig hg19 released low read depth experiment not submitted to GEO ENCFF775ZMD bigWig fold change over control ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF537OYZ, ENCFF581ZJL, ENCFF592CXW 2263405500 ENCODE Processing Pipeline c1ac1c8e4193344768d96180c159bea8 https://www.encodeproject.org/files/ENCFF775ZMD/@@download/ENCFF775ZMD.bigWig hg19 released low read depth experiment not submitted to GEO ENCFF363BOT bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF537OYZ, ENCFF581ZJL, ENCFF592CXW 7144344 ENCODE Processing Pipeline fec12b7e8352b8a6301b1dab0f1dd32a https://www.encodeproject.org/files/ENCFF363BOT/@@download/ENCFF363BOT.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF602FRL bed narrowPeak optimal idr thresholded peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF001TDO, ENCFF363BOT, ENCFF553YOE, ENCFF689MDM 128718 ENCODE Processing Pipeline dd9c4a07d4caf38439993da0495bcfc5 https://www.encodeproject.org/files/ENCFF602FRL/@@download/ENCFF602FRL.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF710DGH bigBed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 ENCFF553YOE 11205455 ENCODE Processing Pipeline cce3d0e3ddaf4c378e41ed52cb9d3bcf https://www.encodeproject.org/files/ENCFF710DGH/@@download/ENCFF710DGH.bigBed hg19 released low read depth experiment not submitted to GEO ENCFF584KVN bigBed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1, 3 ENCFF363BOT 13250842 ENCODE Processing Pipeline a8959a28eee2b6de0972df4824689053 https://www.encodeproject.org/files/ENCFF584KVN/@@download/ENCFF584KVN.bigBed hg19 released low read depth experiment not submitted to GEO ENCFF677KGV bam unfiltered alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 100 ENCFF051EDJ, ENCFF807MUK, ENCFF849GAI 6203289764 ENCODE Processing Pipeline f86e58f2676b28f71ec69d08db165a01 https://www.encodeproject.org/files/ENCFF677KGV/@@download/ENCFF677KGV.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF143XTI bam unfiltered alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 100 ENCFF233EXE, ENCFF708EDK, ENCFF807MUK 4390949867 ENCODE Processing Pipeline d373acc93219521e23c01f99aafd6c52 https://www.encodeproject.org/files/ENCFF143XTI/@@download/ENCFF143XTI.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF233EXE fastq reads ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 1 100 paired-ended 1 ENCFF708EDK 1965072608 Michael Snyder, Stanford 9928d588110b65ccf5131eac62f8a1f7 https://www.encodeproject.org/files/ENCFF233EXE/@@download/ENCFF233EXE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance experiment not submitted to GEO ENCFF708EDK fastq reads ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 1 100 paired-ended 2 ENCFF233EXE 2004382846 Michael Snyder, Stanford 1ce69cdf912a1de5d6ab308c797659b0 https://www.encodeproject.org/files/ENCFF708EDK/@@download/ENCFF708EDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance experiment not submitted to GEO ENCFF051EDJ fastq reads ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 1 100 paired-ended 2 ENCFF849GAI 2876271766 Michael Snyder, Stanford b52d6c5d9ce67fa190d64cdffaf41b8b https://www.encodeproject.org/files/ENCFF051EDJ/@@download/ENCFF051EDJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released borderline replicate concordance experiment not submitted to GEO ENCFF849GAI fastq reads ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 1 100 paired-ended 1 ENCFF051EDJ 2822272800 Michael Snyder, Stanford 318838dd58c7cbdac1b51c64cb311e57 https://www.encodeproject.org/files/ENCFF849GAI/@@download/ENCFF849GAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released borderline replicate concordance experiment not submitted to GEO ENCFF640FIB bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF233EXE, ENCFF708EDK, ENCFF807MUK 3654698745 ENCODE Processing Pipeline cfc89bfa48484bd2076697738ce75e97 https://www.encodeproject.org/files/ENCFF640FIB/@@download/ENCFF640FIB.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF972MSK bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF051EDJ, ENCFF807MUK, ENCFF849GAI 5301139338 ENCODE Processing Pipeline 04183fe8d8f86a1160ecd3d14fc8933f https://www.encodeproject.org/files/ENCFF972MSK/@@download/ENCFF972MSK.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF490REI bam unfiltered alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 100 ENCFF051EDJ, ENCFF643CGH, ENCFF849GAI 6211243888 ENCODE Processing Pipeline 834ec16e3b5610d42337a7b8e0c617f6 https://www.encodeproject.org/files/ENCFF490REI/@@download/ENCFF490REI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF685NTK bam unfiltered alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 100 ENCFF233EXE, ENCFF643CGH, ENCFF708EDK 4396820847 ENCODE Processing Pipeline 0f8fcfc57965c26c23bba7335da60d27 https://www.encodeproject.org/files/ENCFF685NTK/@@download/ENCFF685NTK.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF080WKM bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 100 ENCFF233EXE, ENCFF643CGH, ENCFF708EDK 3657686210 ENCODE Processing Pipeline 6cd58c79cf1fe6a1d61bf7996be9d237 https://www.encodeproject.org/files/ENCFF080WKM/@@download/ENCFF080WKM.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF954COY bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 100 ENCFF051EDJ, ENCFF643CGH, ENCFF849GAI 5304822280 ENCODE Processing Pipeline 3cc16e63748e2c24fa1587790c489dd1 https://www.encodeproject.org/files/ENCFF954COY/@@download/ENCFF954COY.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF410FNM bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF080WKM, ENCFF910IKB, ENCFF954COY 7025886 ENCODE Processing Pipeline f229163b094a28532bd703ab0a2df47f https://www.encodeproject.org/files/ENCFF410FNM/@@download/ENCFF410FNM.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF200WLV bigWig signal p-value ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF080WKM, ENCFF910IKB 1209563514 ENCODE Processing Pipeline 97323d2fb47bb9388c3651b741274ef6 https://www.encodeproject.org/files/ENCFF200WLV/@@download/ENCFF200WLV.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF452OMD bigWig fold change over control ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF080WKM, ENCFF910IKB 1084854910 ENCODE Processing Pipeline 625004a035f0957c054691ff9e2a4477 https://www.encodeproject.org/files/ENCFF452OMD/@@download/ENCFF452OMD.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF010ZCJ bigWig signal p-value ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF910IKB, ENCFF954COY 1410738162 ENCODE Processing Pipeline b39e8b094c53caa7601898518a690818 https://www.encodeproject.org/files/ENCFF010ZCJ/@@download/ENCFF010ZCJ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF805GQZ bigWig signal p-value ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF080WKM, ENCFF910IKB, ENCFF954COY 1551873314 ENCODE Processing Pipeline 24a9dd1785fcc99a4db0acfb89ae73a3 https://www.encodeproject.org/files/ENCFF805GQZ/@@download/ENCFF805GQZ.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF191JED bigWig fold change over control ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF910IKB, ENCFF954COY 1410179656 ENCODE Processing Pipeline fcb3aef00f284704e430d3208bf7b932 https://www.encodeproject.org/files/ENCFF191JED/@@download/ENCFF191JED.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF977JAS bigWig fold change over control ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF080WKM, ENCFF910IKB, ENCFF954COY 1820312616 ENCODE Processing Pipeline 8cfc9044ddf7a638dc36586c0a64ec08 https://www.encodeproject.org/files/ENCFF977JAS/@@download/ENCFF977JAS.bigWig GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF161ASS bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF080WKM, ENCFF910IKB 6301400 ENCODE Processing Pipeline 5732d8ad2839a235cf55702e77f948d8 https://www.encodeproject.org/files/ENCFF161ASS/@@download/ENCFF161ASS.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF957RMO bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF910IKB, ENCFF954COY 6500377 ENCODE Processing Pipeline 92ee6349f124dd5fe7291250078a631d https://www.encodeproject.org/files/ENCFF957RMO/@@download/ENCFF957RMO.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF167XCM bigBed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF161ASS 11177001 ENCODE Processing Pipeline 64b0c0c8cebfd76796c200d45d483905 https://www.encodeproject.org/files/ENCFF167XCM/@@download/ENCFF167XCM.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF842OIK bigBed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF957RMO 11097020 ENCODE Processing Pipeline b75fd6b4ece0b23725327f3da8896de6 https://www.encodeproject.org/files/ENCFF842OIK/@@download/ENCFF842OIK.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF919PLQ bigBed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF410FNM 10931136 ENCODE Processing Pipeline 86bd4ad4fd230f1dad2686a4644979bb https://www.encodeproject.org/files/ENCFF919PLQ/@@download/ENCFF919PLQ.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF908GXO bed narrowPeak conservative idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF161ASS, ENCFF410FNM, ENCFF419RSJ, ENCFF957RMO 25365 ENCODE Processing Pipeline 571a1f07e6945be96bc548d8b42e6487 https://www.encodeproject.org/files/ENCFF908GXO/@@download/ENCFF908GXO.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF346GLE bigBed narrowPeak conservative idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF908GXO 95772 ENCODE Processing Pipeline 1bbf8a1011af3b284efd2240dfbc8ecb https://www.encodeproject.org/files/ENCFF346GLE/@@download/ENCFF346GLE.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF914ELA bed narrowPeak optimal idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF161ASS, ENCFF410FNM, ENCFF419RSJ, ENCFF957RMO 51593 ENCODE Processing Pipeline f8af613a8b6d0c650b2e170e962ed7ba https://www.encodeproject.org/files/ENCFF914ELA/@@download/ENCFF914ELA.bed.gz GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF139XUI bigBed narrowPeak optimal idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF914ELA 157189 ENCODE Processing Pipeline 5e68fc409417683d42ab0536c66c32bb https://www.encodeproject.org/files/ENCFF139XUI/@@download/ENCFF139XUI.bigBed GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF437IAV bigWig signal p-value ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF581ZJL, ENCFF640FIB 979648229 ENCODE Processing Pipeline 2b316e338dbad0561f5d514d5704e966 https://www.encodeproject.org/files/ENCFF437IAV/@@download/ENCFF437IAV.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF907MEI bigWig fold change over control ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF581ZJL, ENCFF640FIB 1082882000 ENCODE Processing Pipeline 8e12d2376db8a4993b54d10cdad2bd78 https://www.encodeproject.org/files/ENCFF907MEI/@@download/ENCFF907MEI.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF246LQR bigWig signal p-value ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF581ZJL, ENCFF972MSK 1134765187 ENCODE Processing Pipeline 6f36cf31687ae292d1c687b5c745ec27 https://www.encodeproject.org/files/ENCFF246LQR/@@download/ENCFF246LQR.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF482ALC bigWig signal p-value ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF581ZJL, ENCFF640FIB, ENCFF972MSK 1549822225 ENCODE Processing Pipeline 62f35a9329a6d9dd9a2acc32632cd7c2 https://www.encodeproject.org/files/ENCFF482ALC/@@download/ENCFF482ALC.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF583AGW bigWig fold change over control ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF581ZJL, ENCFF972MSK 1384348183 ENCODE Processing Pipeline fbaebf32fdaccb65dba46306c1a5fe63 https://www.encodeproject.org/files/ENCFF583AGW/@@download/ENCFF583AGW.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF272DJX bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF581ZJL, ENCFF640FIB, ENCFF972MSK 7021222 ENCODE Processing Pipeline b52d9c4d0b337ae699d028d93bc3beee https://www.encodeproject.org/files/ENCFF272DJX/@@download/ENCFF272DJX.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF239NUO bed narrowPeak conservative idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF001TDO, ENCFF228DXI, ENCFF258OQI, ENCFF272DJX 25827 ENCODE Processing Pipeline c8585d315d35508b3db2b386ca1f7812 https://www.encodeproject.org/files/ENCFF239NUO/@@download/ENCFF239NUO.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF094YJX bigBed narrowPeak optimal idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF452SVO 157645 ENCODE Processing Pipeline 0e561e90a50cb308ed12d485e1fcb93e https://www.encodeproject.org/files/ENCFF094YJX/@@download/ENCFF094YJX.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF087DFZ bigWig fold change over control ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF581ZJL, ENCFF640FIB, ENCFF972MSK 1816709611 ENCODE Processing Pipeline 057e7867a42533b6be8e9235785fa615 https://www.encodeproject.org/files/ENCFF087DFZ/@@download/ENCFF087DFZ.bigWig hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF470QGF bigBed narrowPeak conservative idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF239NUO 94590 ENCODE Processing Pipeline ad1791d686da3fbfdfb593bc58788621 https://www.encodeproject.org/files/ENCFF470QGF/@@download/ENCFF470QGF.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF228DXI bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF581ZJL, ENCFF640FIB 6296303 ENCODE Processing Pipeline 4ae1fa01ff3ce70111549ba834eb89a5 https://www.encodeproject.org/files/ENCFF228DXI/@@download/ENCFF228DXI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF048PHY bigBed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF258OQI 11084254 ENCODE Processing Pipeline c699ead240d73230ec472791364901c4 https://www.encodeproject.org/files/ENCFF048PHY/@@download/ENCFF048PHY.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF285LOK bigBed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF272DJX 10916160 ENCODE Processing Pipeline 7308e70c121f22cd9438ed918659dc86 https://www.encodeproject.org/files/ENCFF285LOK/@@download/ENCFF285LOK.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF258OQI bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF581ZJL, ENCFF972MSK 6502377 ENCODE Processing Pipeline de5c501ce55e29692ecdc1d0c60d8024 https://www.encodeproject.org/files/ENCFF258OQI/@@download/ENCFF258OQI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF276BCK bigBed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF228DXI 11156930 ENCODE Processing Pipeline d138f4c422ba4b171cecc8646713bba1 https://www.encodeproject.org/files/ENCFF276BCK/@@download/ENCFF276BCK.bigBed hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF452SVO bed narrowPeak optimal idr thresholded peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1, 2 ENCFF001TDO, ENCFF228DXI, ENCFF258OQI, ENCFF272DJX 54084 ENCODE Processing Pipeline fca29f9dbc82e6d3e889b2552c4d53bd https://www.encodeproject.org/files/ENCFF452SVO/@@download/ENCFF452SVO.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF299PPE fastq reads ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 1 ENCFF388IIQ 2247763074 Michael Snyder, Stanford 9fc926acf7e21017843c5dab79cda75f SRA:SRR6213220 https://www.encodeproject.org/files/ENCFF299PPE/@@download/ENCFF299PPE.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF964JRV fastq reads ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 1 ENCFF064JDQ 2758767152 Michael Snyder, Stanford 9b4eed3bd6c339b227d79ba7e30d6742 SRA:SRR6213221 https://www.encodeproject.org/files/ENCFF964JRV/@@download/ENCFF964JRV.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF064JDQ fastq reads ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 1 100 paired-ended 2 ENCFF964JRV 3131120338 Michael Snyder, Stanford 24a87190353dc894cb151873aba1d4eb SRA:SRR6213221 https://www.encodeproject.org/files/ENCFF064JDQ/@@download/ENCFF064JDQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF388IIQ fastq reads ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 1 100 paired-ended 2 ENCFF299PPE 2210100241 Michael Snyder, Stanford 3eff1512ea56504e5e5314292de1839d SRA:SRR6213220 https://www.encodeproject.org/files/ENCFF388IIQ/@@download/ENCFF388IIQ.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, borderline replicate concordance ENCFF633BMT bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 100 ENCFF299PPE, ENCFF388IIQ, ENCFF643CGH 3556032465 ENCODE Processing Pipeline a7665c97516ffcad267afc5c84c3e174 https://www.encodeproject.org/files/ENCFF633BMT/@@download/ENCFF633BMT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF363UCG bam unfiltered alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 100 ENCFF299PPE, ENCFF388IIQ, ENCFF807MUK 4395680167 ENCODE Processing Pipeline 5dbdd426283b16f5aa13109c1acf02d8 https://www.encodeproject.org/files/ENCFF363UCG/@@download/ENCFF363UCG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF884CLL bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 100 ENCFF299PPE, ENCFF388IIQ, ENCFF807MUK 3554288740 ENCODE Processing Pipeline a45ce5eeb67338aa6ad3c8f29349bbf8 https://www.encodeproject.org/files/ENCFF884CLL/@@download/ENCFF884CLL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF831QQX bam unfiltered alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 100 ENCFF064JDQ, ENCFF807MUK, ENCFF964JRV 5569414735 ENCODE Processing Pipeline c2071a54020a04e8fd889bc3443d1643 https://www.encodeproject.org/files/ENCFF831QQX/@@download/ENCFF831QQX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF758MYQ bam unfiltered alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 100 ENCFF299PPE, ENCFF388IIQ, ENCFF643CGH 4406231550 ENCODE Processing Pipeline b2f961c0578d2ad73e85b589a55a0de3 https://www.encodeproject.org/files/ENCFF758MYQ/@@download/ENCFF758MYQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF958YKJ bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 100 ENCFF064JDQ, ENCFF807MUK, ENCFF964JRV 3738783733 ENCODE Processing Pipeline 36c76c36ee6e4831aff8ec7fa29986a6 https://www.encodeproject.org/files/ENCFF958YKJ/@@download/ENCFF958YKJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF724SSE bam unfiltered alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 100 ENCFF064JDQ, ENCFF643CGH, ENCFF964JRV 5579595471 ENCODE Processing Pipeline febd755f401a6b80139a88d5c8783435 https://www.encodeproject.org/files/ENCFF724SSE/@@download/ENCFF724SSE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF682IXJ bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 100 ENCFF064JDQ, ENCFF643CGH, ENCFF964JRV 3740814766 ENCODE Processing Pipeline 90cd895b5d8d74aaf22ea0ee0b3bc784 https://www.encodeproject.org/files/ENCFF682IXJ/@@download/ENCFF682IXJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF856NTO bigWig signal p-value ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF191XYH, ENCFF633BMT, ENCFF746SKT 1606259729 ENCODE Processing Pipeline 1be0cda0c1f78ef0ecca81cb083fc60a https://www.encodeproject.org/files/ENCFF856NTO/@@download/ENCFF856NTO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF904GHS bigWig fold change over control ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF191XYH, ENCFF633BMT, ENCFF746SKT 1469161721 ENCODE Processing Pipeline 35b48ca1ef90298feafe87daa95c1c99 https://www.encodeproject.org/files/ENCFF904GHS/@@download/ENCFF904GHS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF148KLB bigWig signal p-value ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF191XYH, ENCFF682IXJ, ENCFF746SKT 1399924672 ENCODE Processing Pipeline 84d037c2385116b5133d00ea19796f94 https://www.encodeproject.org/files/ENCFF148KLB/@@download/ENCFF148KLB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF149EXV bigWig signal p-value ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF191XYH, ENCFF633BMT, ENCFF682IXJ, ENCFF746SKT 1891707719 ENCODE Processing Pipeline df3aebff0227b131b4d61c314a7f24ee https://www.encodeproject.org/files/ENCFF149EXV/@@download/ENCFF149EXV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF239UJS bigWig fold change over control ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF191XYH, ENCFF682IXJ, ENCFF746SKT 1584071397 ENCODE Processing Pipeline 11b3707d1754f191553525ff57672e31 https://www.encodeproject.org/files/ENCFF239UJS/@@download/ENCFF239UJS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF541XSB bigWig fold change over control ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF191XYH, ENCFF633BMT, ENCFF682IXJ, ENCFF746SKT 2149845902 ENCODE Processing Pipeline 1ba5568f67b186395150120c1d60e6b7 https://www.encodeproject.org/files/ENCFF541XSB/@@download/ENCFF541XSB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF579SDH bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF191XYH, ENCFF633BMT, ENCFF746SKT 6101846 ENCODE Processing Pipeline 3a972452e36ef36ee93e41d6b6913ad2 https://www.encodeproject.org/files/ENCFF579SDH/@@download/ENCFF579SDH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF950NTG bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF191XYH, ENCFF682IXJ, ENCFF746SKT 6184656 ENCODE Processing Pipeline 070d028f24a49a5785b7ce8141f0a61e https://www.encodeproject.org/files/ENCFF950NTG/@@download/ENCFF950NTG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF826WGB bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF191XYH, ENCFF633BMT, ENCFF682IXJ, ENCFF746SKT 6953161 ENCODE Processing Pipeline 607faea15acc8e7a91e937b0baf6dfc0 https://www.encodeproject.org/files/ENCFF826WGB/@@download/ENCFF826WGB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF825VXL bigBed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF579SDH 11472644 ENCODE Processing Pipeline 963ae9eedb6cd6668007f93c1deb21be https://www.encodeproject.org/files/ENCFF825VXL/@@download/ENCFF825VXL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF608HCG bigBed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF950NTG 11563767 ENCODE Processing Pipeline d714632461f1158128f39b2319e247b7 https://www.encodeproject.org/files/ENCFF608HCG/@@download/ENCFF608HCG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF906MGS bigBed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF826WGB 11405456 ENCODE Processing Pipeline 6b39296744fcdb61f76b3ca729399a1d https://www.encodeproject.org/files/ENCFF906MGS/@@download/ENCFF906MGS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF558FCT bed narrowPeak conservative idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF579SDH, ENCFF826WGB, ENCFF950NTG 36975 ENCODE Processing Pipeline 6a737c49b3e6ff6471f597c59c555adf https://www.encodeproject.org/files/ENCFF558FCT/@@download/ENCFF558FCT.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF199QUM bigBed narrowPeak conservative idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF558FCT 149001 ENCODE Processing Pipeline e0a64c25e9d17b140dddb58cbddcab58 https://www.encodeproject.org/files/ENCFF199QUM/@@download/ENCFF199QUM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF089GNH bed narrowPeak optimal idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF579SDH, ENCFF826WGB, ENCFF950NTG 58212 ENCODE Processing Pipeline 9ad32a9822989a94e4bc03dc0f302059 https://www.encodeproject.org/files/ENCFF089GNH/@@download/ENCFF089GNH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF406DTF bigBed narrowPeak optimal idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF089GNH 189464 ENCODE Processing Pipeline 5a80d34c146c8489984382052cd6aecc https://www.encodeproject.org/files/ENCFF406DTF/@@download/ENCFF406DTF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF976TOB bigWig signal p-value ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF447KVS, ENCFF823USR, ENCFF884CLL, ENCFF958YKJ 1826675668 ENCODE Processing Pipeline d6890ee5113c1aa2201ede76cc31cd4e https://www.encodeproject.org/files/ENCFF976TOB/@@download/ENCFF976TOB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF020VZO bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF884CLL 6099754 ENCODE Processing Pipeline 0ed27bb8af79240dfd976d8d5e1e81a1 https://www.encodeproject.org/files/ENCFF020VZO/@@download/ENCFF020VZO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF292CGL bigBed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF020VZO 11448317 ENCODE Processing Pipeline ba1e6e2166f9b0c214069722267ee24f https://www.encodeproject.org/files/ENCFF292CGL/@@download/ENCFF292CGL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF281QZF bigWig fold change over control ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF447KVS, ENCFF823USR, ENCFF884CLL, ENCFF958YKJ 2142249041 ENCODE Processing Pipeline d4c5608b93440b74168bb6ae49fec205 https://www.encodeproject.org/files/ENCFF281QZF/@@download/ENCFF281QZF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF024XFA bigWig fold change over control ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF884CLL 1473221557 ENCODE Processing Pipeline e5a61b3ff2e823e735cdb8e62a117af3 https://www.encodeproject.org/files/ENCFF024XFA/@@download/ENCFF024XFA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF911KCB bed narrowPeak optimal idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF020VZO, ENCFF900OFB, ENCFF918SQP 57737 ENCODE Processing Pipeline 6433f12ca8b1f18915b729c7301e77e4 https://www.encodeproject.org/files/ENCFF911KCB/@@download/ENCFF911KCB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF918SQP bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF958YKJ 6182912 ENCODE Processing Pipeline d499eb652a0a5c516172d101524a585d https://www.encodeproject.org/files/ENCFF918SQP/@@download/ENCFF918SQP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF331IXH bigBed narrowPeak optimal idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF911KCB 183728 ENCODE Processing Pipeline 235ea418aa66ecba0c920db11f74f3a9 https://www.encodeproject.org/files/ENCFF331IXH/@@download/ENCFF331IXH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF657YFZ bigWig signal p-value ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF884CLL 1443995032 ENCODE Processing Pipeline d8f82577dbeb5adc9d2d26f8093fa00d https://www.encodeproject.org/files/ENCFF657YFZ/@@download/ENCFF657YFZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF002QXR bigWig fold change over control ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF958YKJ 1566059575 ENCODE Processing Pipeline e5636dc8841646b4e3fbb022219dddf3 https://www.encodeproject.org/files/ENCFF002QXR/@@download/ENCFF002QXR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF900OFB bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF447KVS, ENCFF823USR, ENCFF884CLL, ENCFF958YKJ 6950199 ENCODE Processing Pipeline 5a81551d62e438a0e0688b849cd9e08d https://www.encodeproject.org/files/ENCFF900OFB/@@download/ENCFF900OFB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF234MVI bed narrowPeak conservative idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF001TDO, ENCFF020VZO, ENCFF900OFB, ENCFF918SQP 35792 ENCODE Processing Pipeline 40f0567bd571a883ffe8902b153fe712 https://www.encodeproject.org/files/ENCFF234MVI/@@download/ENCFF234MVI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF010HWX bigWig signal p-value ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF958YKJ 1428088452 ENCODE Processing Pipeline 4d366f5688ab527b12ce4fe5f451ac60 https://www.encodeproject.org/files/ENCFF010HWX/@@download/ENCFF010HWX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF072HOX bigBed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF918SQP 11539405 ENCODE Processing Pipeline 7430b4ad8ab2b79be447e287054f6dd5 https://www.encodeproject.org/files/ENCFF072HOX/@@download/ENCFF072HOX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF829APX bigBed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF900OFB 11375586 ENCODE Processing Pipeline a0f195bebd0edd3db605d0631da6bf55 https://www.encodeproject.org/files/ENCFF829APX/@@download/ENCFF829APX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF557HJU bigBed narrowPeak conservative idr thresholded peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1, 2 ENCFF234MVI 143906 ENCODE Processing Pipeline bfd9096a812008f59b7d881f81a6c150 https://www.encodeproject.org/files/ENCFF557HJU/@@download/ENCFF557HJU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF171CHB fastq reads ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 2 36 single-ended 555055084 Bradley Bernstein, Broad 2ffa61457b97814eb9483767d1733881 https://www.encodeproject.org/files/ENCFF171CHB/@@download/ENCFF171CHB.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBQ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF512JLH fastq reads ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 2 36 single-ended 550420552 Bradley Bernstein, Broad 7904a545e701b34a5a3a899d1e944ca3 https://www.encodeproject.org/files/ENCFF512JLH/@@download/ENCFF512JLH.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBQ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF389MUN fastq reads ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 1 36 single-ended 850628787 Bradley Bernstein, Broad 86751b52319a1118da61d3d5ea0fe8e2 https://www.encodeproject.org/files/ENCFF389MUN/@@download/ENCFF389MUN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBQ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF367CZA fastq reads ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 1 36 single-ended 821951835 Bradley Bernstein, Broad fcfca5d1a727fb0ce05b030aba7508df https://www.encodeproject.org/files/ENCFF367CZA/@@download/ENCFF367CZA.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBQ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF489BCK fastq reads ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 1 76 paired-ended 1 ENCFF958QGW 1505139131 Bradley Bernstein, Broad b30f3e5172811a54a8e65f57afee6cfa https://www.encodeproject.org/files/ENCFF489BCK/@@download/ENCFF489BCK.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBC/, /files/ENCFF536ZKX/, /files/ENCFF788ZCC/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF958QGW fastq reads ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 1 76 paired-ended 2 ENCFF489BCK 1518043940 Bradley Bernstein, Broad d87633b279df45cb32395982ed0c3c6e https://www.encodeproject.org/files/ENCFF958QGW/@@download/ENCFF958QGW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBC/, /files/ENCFF536ZKX/, /files/ENCFF788ZCC/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF547YBG bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 36 ENCFF489BCK, ENCFF643CGH 797254839 ENCODE Processing Pipeline 67fba9a18bb7075fd2527f65958ef049 https://www.encodeproject.org/files/ENCFF547YBG/@@download/ENCFF547YBG.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF341NRI bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 36 ENCFF489BCK, ENCFF807MUK 798394873 ENCODE Processing Pipeline 297179566c02b82ef7a25893fd80cdf0 https://www.encodeproject.org/files/ENCFF341NRI/@@download/ENCFF341NRI.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF648PDB bam unfiltered alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 36 ENCFF489BCK, ENCFF643CGH 1116478978 ENCODE Processing Pipeline 10fc27d741dadcf15f0ef621721ac697 https://www.encodeproject.org/files/ENCFF648PDB/@@download/ENCFF648PDB.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF893ZXS bam unfiltered alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 36 ENCFF489BCK, ENCFF807MUK 1112288840 ENCODE Processing Pipeline 1eb647c74834cddb624f3f8ef5a431d6 https://www.encodeproject.org/files/ENCFF893ZXS/@@download/ENCFF893ZXS.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF977OUD bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 36 ENCFF171CHB, ENCFF367CZA, ENCFF389MUN, ENCFF512JLH, ENCFF807MUK 1859144067 ENCODE Processing Pipeline 4d21f5a7cb47c8ddeab27dae2c0676bb https://www.encodeproject.org/files/ENCFF977OUD/@@download/ENCFF977OUD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF885VAY bam unfiltered alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 36 ENCFF171CHB, ENCFF367CZA, ENCFF389MUN, ENCFF512JLH, ENCFF643CGH 3378343304 ENCODE Processing Pipeline 9b6ded829ce36801ac1ebc68aec12251 https://www.encodeproject.org/files/ENCFF885VAY/@@download/ENCFF885VAY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF434WLM bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 36 ENCFF171CHB, ENCFF367CZA, ENCFF389MUN, ENCFF512JLH, ENCFF643CGH 1858618147 ENCODE Processing Pipeline 151ddd88a8f88f08c0ae5f98f8861cb1 https://www.encodeproject.org/files/ENCFF434WLM/@@download/ENCFF434WLM.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF566BRG bam unfiltered alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 36 ENCFF171CHB, ENCFF367CZA, ENCFF389MUN, ENCFF512JLH, ENCFF807MUK 3358102028 ENCODE Processing Pipeline ec7e0de5d166aa1892f48dee26051130 https://www.encodeproject.org/files/ENCFF566BRG/@@download/ENCFF566BRG.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF223SWY bigWig fold change over control ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF265DDE, ENCFF509ZPI, ENCFF977OUD 1061952334 ENCODE Processing Pipeline bb4b56c0ce0bdd049fc8683118caa2da https://www.encodeproject.org/files/ENCFF223SWY/@@download/ENCFF223SWY.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF017WDB bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI, ENCFF977OUD 6666725 ENCODE Processing Pipeline 75b383265a82d7fedc20f316ceb36f13 https://www.encodeproject.org/files/ENCFF017WDB/@@download/ENCFF017WDB.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF423KFI bigBed narrowPeak conservative idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF045HJT 80633 ENCODE Processing Pipeline 3e4ab0ecc9557cb4452aac13e0f0ce2b https://www.encodeproject.org/files/ENCFF423KFI/@@download/ENCFF423KFI.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF436LGX bigBed narrowPeak optimal idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF007ATC 83840 ENCODE Processing Pipeline 4f204d68fb783b00445e5462b580c659 https://www.encodeproject.org/files/ENCFF436LGX/@@download/ENCFF436LGX.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF830HQX bigWig signal p-value ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI 741850376 ENCODE Processing Pipeline c1630cd25dc6dee7ba054bc7352eb8ed https://www.encodeproject.org/files/ENCFF830HQX/@@download/ENCFF830HQX.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF871CHN bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF012EJM, ENCFF434WLM, ENCFF474SYV, ENCFF547YBG 6686916 ENCODE Processing Pipeline 7b7b6f22803ac7afc09679906ac0aeb5 https://www.encodeproject.org/files/ENCFF871CHN/@@download/ENCFF871CHN.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF520VKN bed narrowPeak optimal idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF235FCN, ENCFF419RSJ, ENCFF740BNE, ENCFF871CHN 2617 ENCODE Processing Pipeline 2668b1ad9f66732ad5c4a480d302d4f5 https://www.encodeproject.org/files/ENCFF520VKN/@@download/ENCFF520VKN.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF472ILA bigBed narrowPeak optimal idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF520VKN 74178 ENCODE Processing Pipeline f568b79b528b00dc814e9aa50f46e5fd https://www.encodeproject.org/files/ENCFF472ILA/@@download/ENCFF472ILA.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF406XRU bigWig signal p-value ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF265DDE, ENCFF509ZPI, ENCFF977OUD 1072369917 ENCODE Processing Pipeline b202b6915d13a44a3d90331ff5023cef https://www.encodeproject.org/files/ENCFF406XRU/@@download/ENCFF406XRU.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF407MNM bigBed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF017WDB 12988447 ENCODE Processing Pipeline 7aaeaeef4b1dc8514ffdab3523e4c268 https://www.encodeproject.org/files/ENCFF407MNM/@@download/ENCFF407MNM.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF294VIJ bigWig fold change over control ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF012EJM, ENCFF474SYV, ENCFF547YBG 541574206 ENCODE Processing Pipeline 579033c7e70caafcce866008421d5873 https://www.encodeproject.org/files/ENCFF294VIJ/@@download/ENCFF294VIJ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF912BHA bigBed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF740BNE 11215888 ENCODE Processing Pipeline c0a031728720a9f4ae2306d05a252656 https://www.encodeproject.org/files/ENCFF912BHA/@@download/ENCFF912BHA.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF800RYP bigWig signal p-value ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI, ENCFF977OUD 1291972913 ENCODE Processing Pipeline 166bfa451ce9cedd9a13674c5e78561b https://www.encodeproject.org/files/ENCFF800RYP/@@download/ENCFF800RYP.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF505JFL bigWig fold change over control ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI 542845183 ENCODE Processing Pipeline 4e19a42ccddbf9afb9260b6e8175de40 https://www.encodeproject.org/files/ENCFF505JFL/@@download/ENCFF505JFL.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF586QTS bigWig fold change over control ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI, ENCFF977OUD 1281816482 ENCODE Processing Pipeline bd98931e1b14d4615162cc26bc8737f1 https://www.encodeproject.org/files/ENCFF586QTS/@@download/ENCFF586QTS.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF474LJV bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF265DDE, ENCFF509ZPI, ENCFF977OUD 6111088 ENCODE Processing Pipeline 1447014b2b607134590318d2a0a7d1a0 https://www.encodeproject.org/files/ENCFF474LJV/@@download/ENCFF474LJV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF419TOT bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI 5887033 ENCODE Processing Pipeline 94c7eb37f002ccaf27c39240143d1ef1 https://www.encodeproject.org/files/ENCFF419TOT/@@download/ENCFF419TOT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF207HOP bigBed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF474LJV 11206190 ENCODE Processing Pipeline 4c402ce6e2796cf2156aae6f6203023d https://www.encodeproject.org/files/ENCFF207HOP/@@download/ENCFF207HOP.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF743PGE bigBed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF419TOT 12817722 ENCODE Processing Pipeline e579e4cd2ce01bb4a4dc8c050cf97cee https://www.encodeproject.org/files/ENCFF743PGE/@@download/ENCFF743PGE.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF045HJT bed narrowPeak conservative idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF001TDO, ENCFF017WDB, ENCFF419TOT, ENCFF474LJV 2578 ENCODE Processing Pipeline 4eca0ada75817932ee16d342f185d812 https://www.encodeproject.org/files/ENCFF045HJT/@@download/ENCFF045HJT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF007ATC bed narrowPeak optimal idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF001TDO, ENCFF017WDB, ENCFF419TOT, ENCFF474LJV 3218 ENCODE Processing Pipeline 8ca2251e458ef9a0aea0ba9d03b41b8e https://www.encodeproject.org/files/ENCFF007ATC/@@download/ENCFF007ATC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF876BRQ bigWig fold change over control ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF012EJM, ENCFF434WLM, ENCFF474SYV, ENCFF547YBG 1265043482 ENCODE Processing Pipeline 933935a36b2d6a3bf2bae2017a55d953 https://www.encodeproject.org/files/ENCFF876BRQ/@@download/ENCFF876BRQ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF886GFT bigBed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF235FCN 12837875 ENCODE Processing Pipeline a2b9d84f1b60df69970cbd36a7cec913 https://www.encodeproject.org/files/ENCFF886GFT/@@download/ENCFF886GFT.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF044DLY bigWig signal p-value ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF012EJM, ENCFF474SYV, ENCFF547YBG 696204016 ENCODE Processing Pipeline 3474ee234d66c567af37eab9d908a94e https://www.encodeproject.org/files/ENCFF044DLY/@@download/ENCFF044DLY.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF740BNE bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF012EJM, ENCFF434WLM, ENCFF474SYV 6110463 ENCODE Processing Pipeline e9e9feafb0482d4abc7a42a0eaeaa7bc https://www.encodeproject.org/files/ENCFF740BNE/@@download/ENCFF740BNE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF235FCN bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF012EJM, ENCFF474SYV, ENCFF547YBG 5825168 ENCODE Processing Pipeline d33adbe9fb79ee22fa8b1c1ad1880b6a https://www.encodeproject.org/files/ENCFF235FCN/@@download/ENCFF235FCN.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF472JVU bed narrowPeak conservative idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF235FCN, ENCFF419RSJ, ENCFF740BNE, ENCFF871CHN 2545 ENCODE Processing Pipeline 65429b0a0b3a9232556453a3393ef712 https://www.encodeproject.org/files/ENCFF472JVU/@@download/ENCFF472JVU.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF699EML bigWig signal p-value ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF012EJM, ENCFF434WLM, ENCFF474SYV, ENCFF547YBG 1255432627 ENCODE Processing Pipeline 194d6674ec0c5953495f8441e3f3f211 https://www.encodeproject.org/files/ENCFF699EML/@@download/ENCFF699EML.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF582SYU bigBed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF871CHN 12976759 ENCODE Processing Pipeline fa2e4efb114ab8bc1a0797eb61e369f1 https://www.encodeproject.org/files/ENCFF582SYU/@@download/ENCFF582SYU.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF170AQL bigBed narrowPeak conservative idr thresholded peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1, 2 ENCFF472JVU 80519 ENCODE Processing Pipeline 56870abde617fdbeb089f9908490ae1c https://www.encodeproject.org/files/ENCFF170AQL/@@download/ENCFF170AQL.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF609OEK bigWig signal p-value ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF012EJM, ENCFF434WLM, ENCFF474SYV 1009903185 ENCODE Processing Pipeline d0a3a36595f755fcb4ab37911aa9e6da https://www.encodeproject.org/files/ENCFF609OEK/@@download/ENCFF609OEK.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF846NIZ bigWig fold change over control ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF012EJM, ENCFF434WLM, ENCFF474SYV 1063730770 ENCODE Processing Pipeline 45db69054e0322644aa524abeec389e6 https://www.encodeproject.org/files/ENCFF846NIZ/@@download/ENCFF846NIZ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF093AOC fastq reads ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF146YVN 2446237544 Michael Snyder, Stanford 121eaff8748c0db6c2e7a7d7433c6bf5 SRA:SRR5112179 https://www.encodeproject.org/files/ENCFF093AOC/@@download/ENCFF093AOC.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF360SUA fastq reads ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF899ZUF 2553168723 Michael Snyder, Stanford 6773998289623e502b558302c21e403b SRA:SRR5112178 https://www.encodeproject.org/files/ENCFF360SUA/@@download/ENCFF360SUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF146YVN fastq reads ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF093AOC 2489855034 Michael Snyder, Stanford 7f4001cbbdbd5c02af4b60f633b347e1 SRA:SRR5112179 https://www.encodeproject.org/files/ENCFF146YVN/@@download/ENCFF146YVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF899ZUF fastq reads ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF360SUA 2595026314 Michael Snyder, Stanford f233013365cdf1c9bb212d46773f1432 SRA:SRR5112178 https://www.encodeproject.org/files/ENCFF899ZUF/@@download/ENCFF899ZUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF579CNK bam unfiltered alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF360SUA, ENCFF643CGH, ENCFF899ZUF 5678300358 ENCODE Processing Pipeline 2d3d67b4bc9ec3bc2cf3cc0d4eae0129 https://www.encodeproject.org/files/ENCFF579CNK/@@download/ENCFF579CNK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF581PZC bam unfiltered alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF093AOC, ENCFF146YVN, ENCFF807MUK 5453179855 ENCODE Processing Pipeline 0ff8ccd61a5a314626f9accb9f4b206d https://www.encodeproject.org/files/ENCFF581PZC/@@download/ENCFF581PZC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF141PHO bam unfiltered alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF360SUA, ENCFF807MUK, ENCFF899ZUF 5673058616 ENCODE Processing Pipeline bf4b3842ba91536acf5a4389c01efb0d https://www.encodeproject.org/files/ENCFF141PHO/@@download/ENCFF141PHO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF577KXM bam unfiltered alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF093AOC, ENCFF146YVN, ENCFF643CGH 5457823762 ENCODE Processing Pipeline 6b57c463197d294717df5f0add171918 https://www.encodeproject.org/files/ENCFF577KXM/@@download/ENCFF577KXM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF902TKE bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF360SUA, ENCFF643CGH, ENCFF899ZUF 4922489948 ENCODE Processing Pipeline 9b94a113d5680b6dee831b0e2ef4804b https://www.encodeproject.org/files/ENCFF902TKE/@@download/ENCFF902TKE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF296AFI bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF093AOC, ENCFF146YVN, ENCFF807MUK 4693726598 ENCODE Processing Pipeline 5c8f425853f8de148aa150d0dcf34be3 https://www.encodeproject.org/files/ENCFF296AFI/@@download/ENCFF296AFI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF738GKY bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF093AOC, ENCFF146YVN, ENCFF643CGH 4695254396 ENCODE Processing Pipeline 34385c1d034889b44a2bcd09649c289e https://www.encodeproject.org/files/ENCFF738GKY/@@download/ENCFF738GKY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF137ZVN bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF360SUA, ENCFF807MUK, ENCFF899ZUF 4920754353 ENCODE Processing Pipeline d7f56bf597190854cc5083bd9593b8c2 https://www.encodeproject.org/files/ENCFF137ZVN/@@download/ENCFF137ZVN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF038VBY bigWig signal p-value ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF137ZVN 1410084552 ENCODE Processing Pipeline b779f7ef2e0dae02b691123dd50dc674 https://www.encodeproject.org/files/ENCFF038VBY/@@download/ENCFF038VBY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF702QKJ bigWig signal p-value ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF296AFI 1266595560 ENCODE Processing Pipeline 19412a400cfff566e874c339a656e63c https://www.encodeproject.org/files/ENCFF702QKJ/@@download/ENCFF702QKJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF201JJM bigWig signal p-value ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF137ZVN, ENCFF296AFI 1982826297 ENCODE Processing Pipeline 164d7cb19d122cd72e220f73d195c789 https://www.encodeproject.org/files/ENCFF201JJM/@@download/ENCFF201JJM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF204UMU bigWig fold change over control ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF137ZVN 1435542531 ENCODE Processing Pipeline 8b5df7b415a19424d58ee51c7ca91144 https://www.encodeproject.org/files/ENCFF204UMU/@@download/ENCFF204UMU.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF967PWX bigWig fold change over control ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF296AFI 1403487635 ENCODE Processing Pipeline 5d8ec7df06fda6b01d4aa983ccd3cab4 https://www.encodeproject.org/files/ENCFF967PWX/@@download/ENCFF967PWX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF099RXK bigWig fold change over control ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF137ZVN, ENCFF296AFI 1993607075 ENCODE Processing Pipeline 8819ff510efb2051efdf39f2e3c2ea2c https://www.encodeproject.org/files/ENCFF099RXK/@@download/ENCFF099RXK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF244UCV bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF137ZVN 6638351 ENCODE Processing Pipeline 7b6158638645da5b560c0532a9b643a6 https://www.encodeproject.org/files/ENCFF244UCV/@@download/ENCFF244UCV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF877WIO bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF296AFI 6745698 ENCODE Processing Pipeline a5279826cad779724aebb7bf14056e42 https://www.encodeproject.org/files/ENCFF877WIO/@@download/ENCFF877WIO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF905OAJ bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF137ZVN, ENCFF296AFI 7241684 ENCODE Processing Pipeline 9751bf7cd829faa7d947d18021443fa0 https://www.encodeproject.org/files/ENCFF905OAJ/@@download/ENCFF905OAJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF964DSM bigBed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF244UCV 11287166 ENCODE Processing Pipeline 7a297403e2e707b7801e64c2dc547c25 https://www.encodeproject.org/files/ENCFF964DSM/@@download/ENCFF964DSM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF261XWT bigBed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF877WIO 11334172 ENCODE Processing Pipeline b8911b9f6994b1095311c1a42cb90743 https://www.encodeproject.org/files/ENCFF261XWT/@@download/ENCFF261XWT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF582JGD bigBed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF905OAJ 13321397 ENCODE Processing Pipeline 7d797f53d5f73de81ea2d5abe054093f https://www.encodeproject.org/files/ENCFF582JGD/@@download/ENCFF582JGD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF227RAO bed narrowPeak conservative idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF244UCV, ENCFF877WIO, ENCFF905OAJ 107117 ENCODE Processing Pipeline 98f28408da25f029991c490e1b1d3e5c https://www.encodeproject.org/files/ENCFF227RAO/@@download/ENCFF227RAO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF177JFZ bed narrowPeak optimal idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF244UCV, ENCFF877WIO, ENCFF905OAJ 139399 ENCODE Processing Pipeline fedea1dd8687d6a9b0501486b61df292 https://www.encodeproject.org/files/ENCFF177JFZ/@@download/ENCFF177JFZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF297VFO bigBed narrowPeak conservative idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF227RAO 259046 ENCODE Processing Pipeline 43a678116459851537f7428110bda1ef https://www.encodeproject.org/files/ENCFF297VFO/@@download/ENCFF297VFO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF191OYW bigBed narrowPeak optimal idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF177JFZ 309550 ENCODE Processing Pipeline 053e95c86f57c811b41db08f77930d90 https://www.encodeproject.org/files/ENCFF191OYW/@@download/ENCFF191OYW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF258GTD bigWig signal p-value ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF902TKE 1269574279 ENCODE Processing Pipeline 4830b18d06325051fb1516e253a63b74 https://www.encodeproject.org/files/ENCFF258GTD/@@download/ENCFF258GTD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF817TEQ bigWig signal p-value ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF738GKY 1202577086 ENCODE Processing Pipeline b48f7735792fcc32566b52a3e574691d https://www.encodeproject.org/files/ENCFF817TEQ/@@download/ENCFF817TEQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF091LXD bigWig signal p-value ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF738GKY, ENCFF902TKE 1995147652 ENCODE Processing Pipeline 767314659a70cb9ae9af2e94cb28b030 https://www.encodeproject.org/files/ENCFF091LXD/@@download/ENCFF091LXD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF879PEV bigWig fold change over control ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF902TKE 1481128517 ENCODE Processing Pipeline 67f2616552cbdcda97707d8051164bed https://www.encodeproject.org/files/ENCFF879PEV/@@download/ENCFF879PEV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF876TRK bigWig fold change over control ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF738GKY 1405599042 ENCODE Processing Pipeline b8b2ba46a12532d78dae7bd72a8c92a8 https://www.encodeproject.org/files/ENCFF876TRK/@@download/ENCFF876TRK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF489MCJ bigWig fold change over control ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF738GKY, ENCFF902TKE 1998960792 ENCODE Processing Pipeline a42b603db8d48433c63004e2ae766b75 https://www.encodeproject.org/files/ENCFF489MCJ/@@download/ENCFF489MCJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF484SZF bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF902TKE 6463852 ENCODE Processing Pipeline feb35677e9412f7621f8e3df28dc0560 https://www.encodeproject.org/files/ENCFF484SZF/@@download/ENCFF484SZF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF688MNQ bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF738GKY, ENCFF902TKE 7214029 ENCODE Processing Pipeline 94871c8b2288e3b90a4873541a41c430 https://www.encodeproject.org/files/ENCFF688MNQ/@@download/ENCFF688MNQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF181NAM bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF738GKY 6620322 ENCODE Processing Pipeline bb259386e70606ac9c5a6dc23148b73f https://www.encodeproject.org/files/ENCFF181NAM/@@download/ENCFF181NAM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF176GPN bigBed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF181NAM 11341082 ENCODE Processing Pipeline 63398ef4dd3ae01b3154c0c7b16c9697 https://www.encodeproject.org/files/ENCFF176GPN/@@download/ENCFF176GPN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF154FOG bigBed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF484SZF 11286974 ENCODE Processing Pipeline 2ca15073bfb86e208f60771afe0a841e https://www.encodeproject.org/files/ENCFF154FOG/@@download/ENCFF154FOG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF023JCL bigBed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF688MNQ 13330095 ENCODE Processing Pipeline 80be87a1a0497f93ca9f3feadb798122 https://www.encodeproject.org/files/ENCFF023JCL/@@download/ENCFF023JCL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF248YUR bigBed narrowPeak conservative idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF766HDH 257047 ENCODE Processing Pipeline 29121033013cefa18ad435d717aaa816 https://www.encodeproject.org/files/ENCFF248YUR/@@download/ENCFF248YUR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF799OTE bed narrowPeak optimal idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF181NAM, ENCFF419RSJ, ENCFF484SZF, ENCFF688MNQ 140126 ENCODE Processing Pipeline 9664e120a1fe30a1c325b04b94256414 https://www.encodeproject.org/files/ENCFF799OTE/@@download/ENCFF799OTE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF766HDH bed narrowPeak conservative idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF181NAM, ENCFF419RSJ, ENCFF484SZF, ENCFF688MNQ 105362 ENCODE Processing Pipeline de0551677a29d2e70757f3bea3cb1ab1 https://www.encodeproject.org/files/ENCFF766HDH/@@download/ENCFF766HDH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF824QLQ bigBed narrowPeak optimal idr thresholded peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF799OTE 310470 ENCODE Processing Pipeline dfe4f7ca65bc07cc9e8937038a3b7322 https://www.encodeproject.org/files/ENCFF824QLQ/@@download/ENCFF824QLQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF240PRL fastq reads ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 1 ENCFF665UFI 2587419897 Michael Snyder, Stanford 5b9827d46f706d29f7de1c5c0ca00960 https://www.encodeproject.org/files/ENCFF240PRL/@@download/ENCFF240PRL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF665UFI fastq reads ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 1 101 paired-ended 2 ENCFF240PRL 2599903300 Michael Snyder, Stanford edf84dc2c4f4c9611b2ef69f4e83cd45 https://www.encodeproject.org/files/ENCFF665UFI/@@download/ENCFF665UFI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF613QZF bam unfiltered alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF240PRL, ENCFF665UFI, ENCFF807MUK 5691422136 ENCODE Processing Pipeline 75ae3a5facf78989bf4e684f96689c3e https://www.encodeproject.org/files/ENCFF613QZF/@@download/ENCFF613QZF.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF656GSZ bam unfiltered alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF240PRL, ENCFF643CGH, ENCFF665UFI 5695448734 ENCODE Processing Pipeline eb5faccf7f69d168f412a2e85c12004d https://www.encodeproject.org/files/ENCFF656GSZ/@@download/ENCFF656GSZ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF518YKF bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF240PRL, ENCFF665UFI, ENCFF807MUK 4792166661 ENCODE Processing Pipeline 94977639d6b9572a016bfb24217d53e7 https://www.encodeproject.org/files/ENCFF518YKF/@@download/ENCFF518YKF.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF627OTJ bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF240PRL, ENCFF643CGH, ENCFF665UFI 4794608754 ENCODE Processing Pipeline a5a3331b1e1bc8ed9c7ef2a078cb1f8f https://www.encodeproject.org/files/ENCFF627OTJ/@@download/ENCFF627OTJ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF525NEA bigWig signal p-value ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF627OTJ 1277063761 ENCODE Processing Pipeline fea7bf711467f0faba81e63a3c4086ed https://www.encodeproject.org/files/ENCFF525NEA/@@download/ENCFF525NEA.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF489GSM bigWig fold change over control ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF627OTJ 1410064346 ENCODE Processing Pipeline 7927fa1729ef3b01a96f39602d85f5e9 https://www.encodeproject.org/files/ENCFF489GSM/@@download/ENCFF489GSM.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF887AFA bigWig signal p-value ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF518YKF 1180458215 ENCODE Processing Pipeline c29387f1a840d457deac73dc63567864 https://www.encodeproject.org/files/ENCFF887AFA/@@download/ENCFF887AFA.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF232STY bigWig fold change over control ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF518YKF 1409479319 ENCODE Processing Pipeline 07a896fe4d4bdab89d30a1344622a4f6 https://www.encodeproject.org/files/ENCFF232STY/@@download/ENCFF232STY.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF085VQS bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF627OTJ 6745293 ENCODE Processing Pipeline 3f680053bc23ef995fbe63c7f90ba168 https://www.encodeproject.org/files/ENCFF085VQS/@@download/ENCFF085VQS.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF371KXR bigBed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF085VQS 11357419 ENCODE Processing Pipeline 06e0890e399dd7bcb20c8306718a4501 https://www.encodeproject.org/files/ENCFF371KXR/@@download/ENCFF371KXR.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF573IJP fastq reads ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 1 ENCFF800JZM 2958463627 Michael Snyder, Stanford 496f0542db4865e63631d20fcdf3caa8 https://www.encodeproject.org/files/ENCFF573IJP/@@download/ENCFF573IJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF800JZM fastq reads ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 1 101 paired-ended 2 ENCFF573IJP 3360984439 Michael Snyder, Stanford 1b5ec0a70c6100955305624b53758b6a https://www.encodeproject.org/files/ENCFF800JZM/@@download/ENCFF800JZM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF036FAR bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF573IJP, ENCFF800JZM, ENCFF807MUK 5452212618 ENCODE Processing Pipeline c0fd9b389ea07705fd340826b7d9411e https://www.encodeproject.org/files/ENCFF036FAR/@@download/ENCFF036FAR.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF807LVD bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF573IJP, ENCFF643CGH, ENCFF800JZM 5450899293 ENCODE Processing Pipeline 191e2287941804d2099a4db6bbcf17b3 https://www.encodeproject.org/files/ENCFF807LVD/@@download/ENCFF807LVD.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF292QXZ bam unfiltered alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF573IJP, ENCFF800JZM, ENCFF807MUK 6407183228 ENCODE Processing Pipeline da5d8ce464c70473cb646449d5adb7c7 https://www.encodeproject.org/files/ENCFF292QXZ/@@download/ENCFF292QXZ.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF613QWA bam unfiltered alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF573IJP, ENCFF643CGH, ENCFF800JZM 6416390587 ENCODE Processing Pipeline 030aa7604dbbca49a288695adf3d9f85 https://www.encodeproject.org/files/ENCFF613QWA/@@download/ENCFF613QWA.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF541PRX bigWig signal p-value ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF036FAR 1405176942 ENCODE Processing Pipeline c433414fc455b9b5fc994a3f488b19a3 https://www.encodeproject.org/files/ENCFF541PRX/@@download/ENCFF541PRX.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF808FXD bigWig signal p-value ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF807LVD 1358718213 ENCODE Processing Pipeline bfdf71c611fe06cd8d9d49684edb837b https://www.encodeproject.org/files/ENCFF808FXD/@@download/ENCFF808FXD.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF658KPB bigWig signal p-value ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF036FAR, ENCFF518YKF 2018210235 ENCODE Processing Pipeline 61dd8835913d025d11ff08a2fd6fd023 https://www.encodeproject.org/files/ENCFF658KPB/@@download/ENCFF658KPB.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF061RZD bigWig signal p-value ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF627OTJ, ENCFF807LVD 1979001817 ENCODE Processing Pipeline 97ca0dba45cc12805c1147ef6c847b78 https://www.encodeproject.org/files/ENCFF061RZD/@@download/ENCFF061RZD.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF682IIK bigWig fold change over control ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF807LVD 1415487642 ENCODE Processing Pipeline ccab09e0ac2b4568f4df9570bf371869 https://www.encodeproject.org/files/ENCFF682IIK/@@download/ENCFF682IIK.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF588XSZ bigWig fold change over control ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF627OTJ, ENCFF807LVD 2010001282 ENCODE Processing Pipeline 4ae924446f977fa13ba4fa604da2092f https://www.encodeproject.org/files/ENCFF588XSZ/@@download/ENCFF588XSZ.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF884DBB bigWig fold change over control ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF036FAR 1408469942 ENCODE Processing Pipeline 9dd3cc7732769a5230076c544f29a306 https://www.encodeproject.org/files/ENCFF884DBB/@@download/ENCFF884DBB.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF436NCZ bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF627OTJ, ENCFF807LVD 7238934 ENCODE Processing Pipeline 2132a129846e16ded568cfbf622d177c https://www.encodeproject.org/files/ENCFF436NCZ/@@download/ENCFF436NCZ.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF572CAM bigBed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF478NGQ 11406665 ENCODE Processing Pipeline 22c35180959957dd9cfc44c11f0886b1 https://www.encodeproject.org/files/ENCFF572CAM/@@download/ENCFF572CAM.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF760EGC bigBed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF436NCZ 13467136 ENCODE Processing Pipeline 8f94b56f38cec3ee6703b81aa18461d6 https://www.encodeproject.org/files/ENCFF760EGC/@@download/ENCFF760EGC.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF478NGQ bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF807LVD 6354848 ENCODE Processing Pipeline 381eb19b46df317acb5581e597e438f7 https://www.encodeproject.org/files/ENCFF478NGQ/@@download/ENCFF478NGQ.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF415LDW bed narrowPeak conservative idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF085VQS, ENCFF419RSJ, ENCFF436NCZ, ENCFF478NGQ 166300 ENCODE Processing Pipeline d90c9024b1b838599cfd48fffa2afbd0 https://www.encodeproject.org/files/ENCFF415LDW/@@download/ENCFF415LDW.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF773KEL bed narrowPeak optimal idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF085VQS, ENCFF419RSJ, ENCFF436NCZ, ENCFF478NGQ 264591 ENCODE Processing Pipeline 11659132a160f0423f136a0adf03745a https://www.encodeproject.org/files/ENCFF773KEL/@@download/ENCFF773KEL.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF675KLI bigBed narrowPeak conservative idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF415LDW 368364 ENCODE Processing Pipeline 04bee9bf93fcbd5b2f5c49069a063b06 https://www.encodeproject.org/files/ENCFF675KLI/@@download/ENCFF675KLI.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF680QHX bigBed narrowPeak optimal idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF773KEL 510114 ENCODE Processing Pipeline ebcbc491e6ce8e6fc7492a4bc2e5466e https://www.encodeproject.org/files/ENCFF680QHX/@@download/ENCFF680QHX.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF537XKP bigBed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF918LYX 11354275 ENCODE Processing Pipeline 32a11cddbe44d5d9ae48c59c1e33f70f https://www.encodeproject.org/files/ENCFF537XKP/@@download/ENCFF537XKP.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF360EXU bigBed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF177QXR 13451333 ENCODE Processing Pipeline 5c986ba8cbc0f5ca8b8540d62ac1771c https://www.encodeproject.org/files/ENCFF360EXU/@@download/ENCFF360EXU.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF918LYX bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF518YKF 6757549 ENCODE Processing Pipeline f5b02d164db07cca0bc49f8bd2f4231d https://www.encodeproject.org/files/ENCFF918LYX/@@download/ENCFF918LYX.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF180NLX bigWig fold change over control ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF036FAR, ENCFF518YKF 2042744265 ENCODE Processing Pipeline c156da7dc20974efdae8048756ce350a https://www.encodeproject.org/files/ENCFF180NLX/@@download/ENCFF180NLX.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF177QXR bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF036FAR, ENCFF518YKF 7240925 ENCODE Processing Pipeline f492cfeacf5bf64a35833bb65e811486 https://www.encodeproject.org/files/ENCFF177QXR/@@download/ENCFF177QXR.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF178AYI bigBed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF914HFS 11402206 ENCODE Processing Pipeline 3d9ce71a1a9b413cedb6cea0af168bc9 https://www.encodeproject.org/files/ENCFF178AYI/@@download/ENCFF178AYI.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF495DYT bed narrowPeak conservative idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF177QXR, ENCFF914HFS, ENCFF918LYX 168934 ENCODE Processing Pipeline 5708f2c9fda5f6b237c1125a80b7f067 https://www.encodeproject.org/files/ENCFF495DYT/@@download/ENCFF495DYT.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF406CJH bigBed narrowPeak conservative idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF495DYT 371635 ENCODE Processing Pipeline 71b9cc690b238a5700af1bc8e06417f9 https://www.encodeproject.org/files/ENCFF406CJH/@@download/ENCFF406CJH.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF914HFS bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF036FAR 6367683 ENCODE Processing Pipeline 6a0073376edf14d7961b9d997a2d30d1 https://www.encodeproject.org/files/ENCFF914HFS/@@download/ENCFF914HFS.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF753PSY bed narrowPeak optimal idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF001TDO, ENCFF177QXR, ENCFF914HFS, ENCFF918LYX 269141 ENCODE Processing Pipeline c4ba1b07a13451f76bf22cd7e718df82 https://www.encodeproject.org/files/ENCFF753PSY/@@download/ENCFF753PSY.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF373XTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1, 2 ENCFF753PSY 513533 ENCODE Processing Pipeline 9193a9c309c76af97a9be03bcf8ec60f https://www.encodeproject.org/files/ENCFF373XTQ/@@download/ENCFF373XTQ.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF693QBS fastq reads ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF226SDV 1295592684 Michael Snyder, Stanford ca790993bb491249c971462c26b96023 SRA:SRR5111291 https://www.encodeproject.org/files/ENCFF693QBS/@@download/ENCFF693QBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF841UXT fastq reads ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF354SEG 1399599270 Michael Snyder, Stanford edfcdefcdddd7e90635fd0baacaf7b87 SRA:SRR5111290 https://www.encodeproject.org/files/ENCFF841UXT/@@download/ENCFF841UXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF226SDV fastq reads ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF693QBS 1291805162 Michael Snyder, Stanford 1cacc5d81dd30f542499ead530dbd2b3 SRA:SRR5111291 https://www.encodeproject.org/files/ENCFF226SDV/@@download/ENCFF226SDV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF354SEG fastq reads ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF841UXT 1395497426 Michael Snyder, Stanford e7652ba2833c98c8d6ce38365127a72f SRA:SRR5111290 https://www.encodeproject.org/files/ENCFF354SEG/@@download/ENCFF354SEG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF812PUE bam unfiltered alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF354SEG, ENCFF807MUK, ENCFF841UXT 3205502696 ENCODE Processing Pipeline 6ebcd95def1dae4b9ebfebc3b7c8f2af https://www.encodeproject.org/files/ENCFF812PUE/@@download/ENCFF812PUE.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF446IXT bam unfiltered alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF226SDV, ENCFF693QBS, ENCFF807MUK 2986911306 ENCODE Processing Pipeline 31c7a7f2b839574394d00c4d25e8f932 https://www.encodeproject.org/files/ENCFF446IXT/@@download/ENCFF446IXT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF385ZTG bam unfiltered alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF354SEG, ENCFF643CGH, ENCFF841UXT 3209644983 ENCODE Processing Pipeline b491eb8949fb21faf786acea4f9b065d https://www.encodeproject.org/files/ENCFF385ZTG/@@download/ENCFF385ZTG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF474GKS bam unfiltered alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF226SDV, ENCFF643CGH, ENCFF693QBS 2990807610 ENCODE Processing Pipeline f31afb7a5e3de79350560ef800b70bab https://www.encodeproject.org/files/ENCFF474GKS/@@download/ENCFF474GKS.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF705QJT bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF226SDV, ENCFF643CGH, ENCFF693QBS 2677653317 ENCODE Processing Pipeline f9f1c8de396c5524e3ff6ea86ddc6f3e https://www.encodeproject.org/files/ENCFF705QJT/@@download/ENCFF705QJT.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF739NWN bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF354SEG, ENCFF643CGH, ENCFF841UXT 2879063235 ENCODE Processing Pipeline d71e8e159a2e067433545ef4c52e499c https://www.encodeproject.org/files/ENCFF739NWN/@@download/ENCFF739NWN.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF201XXY bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF354SEG, ENCFF807MUK, ENCFF841UXT 2877654363 ENCODE Processing Pipeline 2efbae672aadcdccc4d6f06bc7642e18 https://www.encodeproject.org/files/ENCFF201XXY/@@download/ENCFF201XXY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF182IWX bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF226SDV, ENCFF693QBS, ENCFF807MUK 2676130725 ENCODE Processing Pipeline f0d88e705c232f0e8981baaff94507a6 https://www.encodeproject.org/files/ENCFF182IWX/@@download/ENCFF182IWX.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF327JWU bigWig signal p-value ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF201XXY 1077822588 ENCODE Processing Pipeline 41734a91f6221c5d3aaee04375b160cf https://www.encodeproject.org/files/ENCFF327JWU/@@download/ENCFF327JWU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF490HCF bigWig signal p-value ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF182IWX 1061482867 ENCODE Processing Pipeline 36b586480023d693835d251707097a5d https://www.encodeproject.org/files/ENCFF490HCF/@@download/ENCFF490HCF.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF152OIN bigWig signal p-value ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF182IWX, ENCFF201XXY 1459489793 ENCODE Processing Pipeline 4310623f7a40a00a661b20769d3c5065 https://www.encodeproject.org/files/ENCFF152OIN/@@download/ENCFF152OIN.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF970XTI bigWig fold change over control ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF201XXY 1116981003 ENCODE Processing Pipeline de1dd264ed7af95ca5d98d3f6613d2b4 https://www.encodeproject.org/files/ENCFF970XTI/@@download/ENCFF970XTI.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF934UYT bigWig fold change over control ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF182IWX 1071981690 ENCODE Processing Pipeline ae548a46d529a0088a3b71983a32542f https://www.encodeproject.org/files/ENCFF934UYT/@@download/ENCFF934UYT.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF654ORX bigWig fold change over control ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF182IWX, ENCFF201XXY 1628096090 ENCODE Processing Pipeline b138e9ea9fb243ae0ec8548bf55d2744 https://www.encodeproject.org/files/ENCFF654ORX/@@download/ENCFF654ORX.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF853GEN bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF201XXY 6544113 ENCODE Processing Pipeline fe8ad1a4922d122535b4752d2b4a1000 https://www.encodeproject.org/files/ENCFF853GEN/@@download/ENCFF853GEN.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF084JTV bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF182IWX 6425326 ENCODE Processing Pipeline 7090a2dc6386d76264a90504f421aedc https://www.encodeproject.org/files/ENCFF084JTV/@@download/ENCFF084JTV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF310IPF bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF182IWX, ENCFF201XXY 7076639 ENCODE Processing Pipeline 9fb8eb2f7c2b581c2b7610a6b8b6b9fe https://www.encodeproject.org/files/ENCFF310IPF/@@download/ENCFF310IPF.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF476OLJ bigBed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF853GEN 11477100 ENCODE Processing Pipeline 6efbc5f798cf49d0ec0fd8c51c010384 https://www.encodeproject.org/files/ENCFF476OLJ/@@download/ENCFF476OLJ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF250GOD bigBed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF084JTV 11512255 ENCODE Processing Pipeline eea103c29e193731488c73bb95c078cb https://www.encodeproject.org/files/ENCFF250GOD/@@download/ENCFF250GOD.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF670XEN bigBed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF310IPF 11492627 ENCODE Processing Pipeline b35a4ba714637fe535059cbd32a2ae1b https://www.encodeproject.org/files/ENCFF670XEN/@@download/ENCFF670XEN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF773QUE bed narrowPeak conservative idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF084JTV, ENCFF310IPF, ENCFF853GEN 443113 ENCODE Processing Pipeline 6709b6093c9cd227a5bce05dc1c4201d https://www.encodeproject.org/files/ENCFF773QUE/@@download/ENCFF773QUE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF207NEK bigBed narrowPeak conservative idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF773QUE 814886 ENCODE Processing Pipeline 1e0cb14f1faf722cdc7f309f85813269 https://www.encodeproject.org/files/ENCFF207NEK/@@download/ENCFF207NEK.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF467FLP bed narrowPeak optimal idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF084JTV, ENCFF310IPF, ENCFF853GEN 546809 ENCODE Processing Pipeline 6c3d2167f964abff217e3bbc5008c950 https://www.encodeproject.org/files/ENCFF467FLP/@@download/ENCFF467FLP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF227WHI bigBed narrowPeak optimal idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF467FLP 956686 ENCODE Processing Pipeline 757e4fb99a91ee5eadbdeb2cd02711aa https://www.encodeproject.org/files/ENCFF227WHI/@@download/ENCFF227WHI.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF898CRR bigWig signal p-value ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739NWN 1159622815 ENCODE Processing Pipeline 72024732ea034378e865fffe64784c06 https://www.encodeproject.org/files/ENCFF898CRR/@@download/ENCFF898CRR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF937NDJ bigWig signal p-value ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF705QJT, ENCFF739NWN 1571527101 ENCODE Processing Pipeline ef8ac6b3deaee756a1af7fb2dd1e03fb https://www.encodeproject.org/files/ENCFF937NDJ/@@download/ENCFF937NDJ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF274KOO bigWig signal p-value ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF705QJT 1193149365 ENCODE Processing Pipeline a83496ec30c6a6f87cf89faba83f1a25 https://www.encodeproject.org/files/ENCFF274KOO/@@download/ENCFF274KOO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF538WCZ bigWig fold change over control ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739NWN 1116700939 ENCODE Processing Pipeline a7c09e82ab8a3c48fb96b9820f85bc7e https://www.encodeproject.org/files/ENCFF538WCZ/@@download/ENCFF538WCZ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF958HPO bigWig fold change over control ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF705QJT 1078932337 ENCODE Processing Pipeline a4cd0888a390a15b95d200715663d366 https://www.encodeproject.org/files/ENCFF958HPO/@@download/ENCFF958HPO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF955YWG bigWig fold change over control ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF705QJT, ENCFF739NWN 1636485349 ENCODE Processing Pipeline 4a5b85e44c40819110cf7a02493e0c88 https://www.encodeproject.org/files/ENCFF955YWG/@@download/ENCFF955YWG.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF867OHR bigBed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF879XJO 11494205 ENCODE Processing Pipeline c03730018a4b64a2afd9ab824cf5ff6f https://www.encodeproject.org/files/ENCFF867OHR/@@download/ENCFF867OHR.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF246OOT bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF705QJT 6320230 ENCODE Processing Pipeline b1e7f20e4ebfbb33c4e42d213ab1ccab https://www.encodeproject.org/files/ENCFF246OOT/@@download/ENCFF246OOT.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF675SCO bigBed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF986OZD 11518959 ENCODE Processing Pipeline ebb57004db9f65a3c83e25769359ac9a https://www.encodeproject.org/files/ENCFF675SCO/@@download/ENCFF675SCO.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF216CNI bigBed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF246OOT 11510595 ENCODE Processing Pipeline 2db2b3e4c34c45e3cc8b0bdf1a881a66 https://www.encodeproject.org/files/ENCFF216CNI/@@download/ENCFF216CNI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF225VCG bed narrowPeak optimal idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF246OOT, ENCFF419RSJ, ENCFF879XJO, ENCFF986OZD 545274 ENCODE Processing Pipeline 7fdb39154e30cf81733d2cec5183486c https://www.encodeproject.org/files/ENCFF225VCG/@@download/ENCFF225VCG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF879XJO bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739NWN 6418441 ENCODE Processing Pipeline eab5744eac8c294d37df62fa60c06813 https://www.encodeproject.org/files/ENCFF879XJO/@@download/ENCFF879XJO.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF986OZD bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF705QJT, ENCFF739NWN 7012609 ENCODE Processing Pipeline 8658088c823bacac8e995c2b4af6be2a https://www.encodeproject.org/files/ENCFF986OZD/@@download/ENCFF986OZD.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF746GFU bed narrowPeak conservative idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF246OOT, ENCFF419RSJ, ENCFF879XJO, ENCFF986OZD 446799 ENCODE Processing Pipeline 14e4bd47de2031f925947bda76ec8fd5 https://www.encodeproject.org/files/ENCFF746GFU/@@download/ENCFF746GFU.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF486GVP bigBed narrowPeak conservative idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF746GFU 824431 ENCODE Processing Pipeline 932093aa750b043a04753acb58287cb7 https://www.encodeproject.org/files/ENCFF486GVP/@@download/ENCFF486GVP.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF060HXL bigBed narrowPeak optimal idr thresholded peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF225VCG 958240 ENCODE Processing Pipeline 40c7224aabbfdd9bc1bcd4cf19c09a14 https://www.encodeproject.org/files/ENCFF060HXL/@@download/ENCFF060HXL.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF916UAH fastq reads ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF988TNQ 2662125315 Michael Snyder, Stanford 4899ac504225b95b9416bee03aed6a62 SRA:SRR5111565 https://www.encodeproject.org/files/ENCFF916UAH/@@download/ENCFF916UAH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF017EAR fastq reads ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF795EIH 2991829130 Michael Snyder, Stanford ee53a83277b10bbdeee19d734b7bdd9d SRA:SRR5111564 https://www.encodeproject.org/files/ENCFF017EAR/@@download/ENCFF017EAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF988TNQ fastq reads ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF916UAH 2758772323 Michael Snyder, Stanford 7c1799bfc4c0ca5f7ea0d4417af19fce SRA:SRR5111565 https://www.encodeproject.org/files/ENCFF988TNQ/@@download/ENCFF988TNQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF795EIH fastq reads ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF017EAR 3098492084 Michael Snyder, Stanford ed8eec9e375354704d325ec435d71784 SRA:SRR5111564 https://www.encodeproject.org/files/ENCFF795EIH/@@download/ENCFF795EIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF339ZTR bam unfiltered alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF017EAR, ENCFF643CGH, ENCFF795EIH 6603391997 ENCODE Processing Pipeline 610a98c36cff0b58b5b125015499b83b https://www.encodeproject.org/files/ENCFF339ZTR/@@download/ENCFF339ZTR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF192FDZ bam unfiltered alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF807MUK, ENCFF916UAH, ENCFF988TNQ 5898923330 ENCODE Processing Pipeline 5bcd9e86f328066846673d17b5f0dff6 https://www.encodeproject.org/files/ENCFF192FDZ/@@download/ENCFF192FDZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF145UFK bam unfiltered alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF017EAR, ENCFF795EIH, ENCFF807MUK 6597974314 ENCODE Processing Pipeline 7b87c54ab1817f6ba14bf807d41e7e03 https://www.encodeproject.org/files/ENCFF145UFK/@@download/ENCFF145UFK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF631GFV bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF807MUK, ENCFF916UAH, ENCFF988TNQ 5107308595 ENCODE Processing Pipeline a0b9381e29bcd0df6aa281ae66e3dabb https://www.encodeproject.org/files/ENCFF631GFV/@@download/ENCFF631GFV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF305MAN bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF017EAR, ENCFF795EIH, ENCFF807MUK 5653738763 ENCODE Processing Pipeline 8449994f4e27151ed2b60e6fab576486 https://www.encodeproject.org/files/ENCFF305MAN/@@download/ENCFF305MAN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF594BJW bam unfiltered alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF643CGH, ENCFF916UAH, ENCFF988TNQ 5903786807 ENCODE Processing Pipeline 34c630d7184e259c1072de6c3ff50c46 https://www.encodeproject.org/files/ENCFF594BJW/@@download/ENCFF594BJW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF202NKF bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF017EAR, ENCFF643CGH, ENCFF795EIH 5654840369 ENCODE Processing Pipeline c89e095fc20f317aaf12634a19e88450 https://www.encodeproject.org/files/ENCFF202NKF/@@download/ENCFF202NKF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF766CMW bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF643CGH, ENCFF916UAH, ENCFF988TNQ 5107492040 ENCODE Processing Pipeline ce4a4d375dad8c799e8c5861939c09d2 https://www.encodeproject.org/files/ENCFF766CMW/@@download/ENCFF766CMW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF751YKJ bigWig signal p-value ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF631GFV 1271027671 ENCODE Processing Pipeline 52065e54c9632e364b477c1f77815233 https://www.encodeproject.org/files/ENCFF751YKJ/@@download/ENCFF751YKJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF795JVT bigWig signal p-value ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF305MAN 1551348934 ENCODE Processing Pipeline b29caf0936ab081d873f0293bd123759 https://www.encodeproject.org/files/ENCFF795JVT/@@download/ENCFF795JVT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF090EUO bigWig signal p-value ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF305MAN, ENCFF631GFV 1976712293 ENCODE Processing Pipeline d0c614d5361eb8c176c91d592fedded4 https://www.encodeproject.org/files/ENCFF090EUO/@@download/ENCFF090EUO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF641WZD bigWig fold change over control ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF631GFV 1428857784 ENCODE Processing Pipeline 5aefc5536d467af3178d26cae1da6d9d https://www.encodeproject.org/files/ENCFF641WZD/@@download/ENCFF641WZD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF436JHZ bigWig fold change over control ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF305MAN 1519269023 ENCODE Processing Pipeline 0123fca53d23eb6210a1b4e0f82a3970 https://www.encodeproject.org/files/ENCFF436JHZ/@@download/ENCFF436JHZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF980ZBN bigWig fold change over control ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF305MAN, ENCFF631GFV 2076377790 ENCODE Processing Pipeline 862b6b637790b3911bc34e5483226c8d https://www.encodeproject.org/files/ENCFF980ZBN/@@download/ENCFF980ZBN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF715SOH bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF631GFV 7202572 ENCODE Processing Pipeline b04a19b074d47a4629b96be42040a8b1 https://www.encodeproject.org/files/ENCFF715SOH/@@download/ENCFF715SOH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF056ABC bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF305MAN 7137493 ENCODE Processing Pipeline 734336633513e920a4515362315fe20d https://www.encodeproject.org/files/ENCFF056ABC/@@download/ENCFF056ABC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF206AFW bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF305MAN, ENCFF631GFV 7304688 ENCODE Processing Pipeline 84ffa4141e1cdfe0a5c9094bf71e386c https://www.encodeproject.org/files/ENCFF206AFW/@@download/ENCFF206AFW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF207UWW bigBed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF715SOH 13223956 ENCODE Processing Pipeline ada152be079a3a6a6827a019a18d7bd8 https://www.encodeproject.org/files/ENCFF207UWW/@@download/ENCFF207UWW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF832HKD bigBed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF056ABC 13268250 ENCODE Processing Pipeline 63ed108f85dff3a02853730b50e33fc3 https://www.encodeproject.org/files/ENCFF832HKD/@@download/ENCFF832HKD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF998UQQ bigBed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF206AFW 13124097 ENCODE Processing Pipeline 18f7030db73a438d46a8b47f76952beb https://www.encodeproject.org/files/ENCFF998UQQ/@@download/ENCFF998UQQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF614DSW bed narrowPeak conservative idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF056ABC, ENCFF206AFW, ENCFF715SOH 624896 ENCODE Processing Pipeline 4af2b93ea39ec287f033ba81a4ff130a https://www.encodeproject.org/files/ENCFF614DSW/@@download/ENCFF614DSW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF696EVC bigBed narrowPeak conservative idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF614DSW 1181884 ENCODE Processing Pipeline f6db6e6a7711fe05fca48cab62016324 https://www.encodeproject.org/files/ENCFF696EVC/@@download/ENCFF696EVC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF074FDF bigBed narrowPeak optimal idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF234YTK 1222860 ENCODE Processing Pipeline 4665d7a2c834882aa2f350a0c1e336fe https://www.encodeproject.org/files/ENCFF074FDF/@@download/ENCFF074FDF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF234YTK bed narrowPeak optimal idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF056ABC, ENCFF206AFW, ENCFF715SOH 649257 ENCODE Processing Pipeline 5c3aa6a5fe07ea87c2fdf2eed13167e6 https://www.encodeproject.org/files/ENCFF234YTK/@@download/ENCFF234YTK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF809OPB bigWig signal p-value ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF766CMW 1337482088 ENCODE Processing Pipeline b640d2c5896577f2c06b42ea447b71d0 https://www.encodeproject.org/files/ENCFF809OPB/@@download/ENCFF809OPB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF975EMW bigWig signal p-value ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF202NKF 1321038433 ENCODE Processing Pipeline 7e05bddddaaa12ffb0ea433e5b83d015 https://www.encodeproject.org/files/ENCFF975EMW/@@download/ENCFF975EMW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF704MNQ bigWig signal p-value ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF202NKF, ENCFF766CMW 1978147024 ENCODE Processing Pipeline 460f7ca9a0c9fb0cf71331e811c27321 https://www.encodeproject.org/files/ENCFF704MNQ/@@download/ENCFF704MNQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF222LEI bigWig fold change over control ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF766CMW 1452797116 ENCODE Processing Pipeline 6106b7e08634829727c6977bc2b1ed2e https://www.encodeproject.org/files/ENCFF222LEI/@@download/ENCFF222LEI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF776JZB bigWig fold change over control ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF202NKF 1524134969 ENCODE Processing Pipeline 23bdddfe08523892dfd295ce0fa239d1 https://www.encodeproject.org/files/ENCFF776JZB/@@download/ENCFF776JZB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF278CLQ bigWig fold change over control ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF202NKF, ENCFF766CMW 2083149911 ENCODE Processing Pipeline e975988a79eb5acf71db3be05c64d8eb https://www.encodeproject.org/files/ENCFF278CLQ/@@download/ENCFF278CLQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF464BTI bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF766CMW 7156706 ENCODE Processing Pipeline 8bd366251869f7a1d0bedd1653eedf33 https://www.encodeproject.org/files/ENCFF464BTI/@@download/ENCFF464BTI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF095PPU bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF202NKF 7094866 ENCODE Processing Pipeline 40e1c422828db84fc3222d582cbecd54 https://www.encodeproject.org/files/ENCFF095PPU/@@download/ENCFF095PPU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF103VFZ bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF202NKF, ENCFF766CMW 7270869 ENCODE Processing Pipeline 5c6f34a7941a3388ad8779ccb6b364bd https://www.encodeproject.org/files/ENCFF103VFZ/@@download/ENCFF103VFZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF856HFX bigBed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF103VFZ 13104006 ENCODE Processing Pipeline 441f5cd527357ca33b287663ab684ed9 https://www.encodeproject.org/files/ENCFF856HFX/@@download/ENCFF856HFX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF443PNW bigBed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF464BTI 13225631 ENCODE Processing Pipeline b25dfd113e9910697485bc4219ac4f7e https://www.encodeproject.org/files/ENCFF443PNW/@@download/ENCFF443PNW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF012WMI bigBed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF095PPU 13286831 ENCODE Processing Pipeline a004d1d0e06991874cb3613131b46154 https://www.encodeproject.org/files/ENCFF012WMI/@@download/ENCFF012WMI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF167MHN bed narrowPeak optimal idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF095PPU, ENCFF103VFZ, ENCFF419RSJ, ENCFF464BTI 633006 ENCODE Processing Pipeline 4c104adad6f84e3c51445683b6dc6e40 https://www.encodeproject.org/files/ENCFF167MHN/@@download/ENCFF167MHN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF276NIW bed narrowPeak conservative idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF095PPU, ENCFF103VFZ, ENCFF419RSJ, ENCFF464BTI 610562 ENCODE Processing Pipeline 1c2e77879a157b1e72efa90f8cc36dd5 https://www.encodeproject.org/files/ENCFF276NIW/@@download/ENCFF276NIW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF684JWM bigBed narrowPeak conservative idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF276NIW 1163714 ENCODE Processing Pipeline d7eafa48603cff633c7e61d1e91ce95c https://www.encodeproject.org/files/ENCFF684JWM/@@download/ENCFF684JWM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF763THS bigBed narrowPeak optimal idr thresholded peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF167MHN 1203087 ENCODE Processing Pipeline 5ded462161b9237e52cfecf64cd454fe https://www.encodeproject.org/files/ENCFF763THS/@@download/ENCFF763THS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF026HDJ bam unfiltered alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF807MUK 6909279434 ENCODE Processing Pipeline 089ae8edacc3fe5b14516e4462d40cff https://www.encodeproject.org/files/ENCFF026HDJ/@@download/ENCFF026HDJ.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF616WSS fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 1 100 paired-ended 2 ENCFF246DIP 3323876691 Michael Snyder, Stanford ad6fcc5a605abc786693425351c1f378 SRA:SRR5112300 https://www.encodeproject.org/files/ENCFF616WSS/@@download/ENCFF616WSS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking mismatched file status ENCFF246DIP fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 1 100 paired-ended 1 ENCFF616WSS 3237799633 Michael Snyder, Stanford 3d88191afecaf9c7320798fe6297bf94 SRA:SRR5112300 https://www.encodeproject.org/files/ENCFF246DIP/@@download/ENCFF246DIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking mismatched file status ENCFF960TNP fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF640CBP 2609862548 Michael Snyder, Stanford bfcbdc80080af70cee6bf7101c67b1b0 SRA:SRR5112299 https://www.encodeproject.org/files/ENCFF960TNP/@@download/ENCFF960TNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking mismatched file status ENCFF640CBP fastq reads ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF960TNP 2729428269 Michael Snyder, Stanford 987bf22c45279959c61795766f1a2e30 SRA:SRR5112299 https://www.encodeproject.org/files/ENCFF640CBP/@@download/ENCFF640CBP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking mismatched file status ENCFF360QES bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF807MUK, ENCFF960TNP 4506516425 ENCODE Processing Pipeline da6b65a21e1f899cc48bf9bf8cf8390d https://www.encodeproject.org/files/ENCFF360QES/@@download/ENCFF360QES.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF769NOS bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF807MUK 5613697645 ENCODE Processing Pipeline 4f839c5cb982c5a4d863e574d8a309eb https://www.encodeproject.org/files/ENCFF769NOS/@@download/ENCFF769NOS.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF701IVE bam unfiltered alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF643CGH, ENCFF960TNP 5586737242 ENCODE Processing Pipeline b30eb9df398876a1ab44c76a07bcef95 https://www.encodeproject.org/files/ENCFF701IVE/@@download/ENCFF701IVE.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF285XVW bam unfiltered alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF643CGH 6878044936 ENCODE Processing Pipeline 3a1c4b731c1ca966e0a4d28ae56b3c2f https://www.encodeproject.org/files/ENCFF285XVW/@@download/ENCFF285XVW.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF640XZS bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF643CGH, ENCFF960TNP 4536875532 ENCODE Processing Pipeline 07771f1a5eee26aa9a47dbb006383762 https://www.encodeproject.org/files/ENCFF640XZS/@@download/ENCFF640XZS.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF943EGP bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF643CGH 5699059937 ENCODE Processing Pipeline 4f902e020fd48df020d89fd9fe990618 https://www.encodeproject.org/files/ENCFF943EGP/@@download/ENCFF943EGP.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF769SWM bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF574BGV, ENCFF640XZS 1109634250 ENCODE Processing Pipeline 85b47d7e033f053fa7ea22f4b892ead7 https://www.encodeproject.org/files/ENCFF769SWM/@@download/ENCFF769SWM.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF045QNU bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF879YMO, ENCFF943EGP 1234861153 ENCODE Processing Pipeline a72f97bc149082f6bfd7f388f851b109 https://www.encodeproject.org/files/ENCFF045QNU/@@download/ENCFF045QNU.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF108EBY bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF574BGV, ENCFF640XZS, ENCFF879YMO, ENCFF943EGP 1760586570 ENCODE Processing Pipeline 34c8a525b98a8f1f3dbbdfb5963a1b05 https://www.encodeproject.org/files/ENCFF108EBY/@@download/ENCFF108EBY.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF146JBQ bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF574BGV, ENCFF640XZS 1132888632 ENCODE Processing Pipeline 2208f62db623588099cead8a26b56303 https://www.encodeproject.org/files/ENCFF146JBQ/@@download/ENCFF146JBQ.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF076BBM bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF879YMO, ENCFF943EGP 1429418479 ENCODE Processing Pipeline 9a36ae5e3f51e9cf0aaef0bb2fcce6bf https://www.encodeproject.org/files/ENCFF076BBM/@@download/ENCFF076BBM.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF232VFZ bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF574BGV, ENCFF640XZS, ENCFF879YMO, ENCFF943EGP 2288646706 ENCODE Processing Pipeline 9fb90351fdab8937f6940ab72090e37b https://www.encodeproject.org/files/ENCFF232VFZ/@@download/ENCFF232VFZ.bigWig GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF667GBN bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF574BGV, ENCFF640XZS 6734108 ENCODE Processing Pipeline e5d5b0ebfad004435f83298795c69031 https://www.encodeproject.org/files/ENCFF667GBN/@@download/ENCFF667GBN.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF772FDS bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF574BGV, ENCFF640XZS, ENCFF879YMO, ENCFF943EGP 7240872 ENCODE Processing Pipeline c5a03e875c5f83fdd1118b4499ec33ce https://www.encodeproject.org/files/ENCFF772FDS/@@download/ENCFF772FDS.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF025KAP bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF667GBN 13522886 ENCODE Processing Pipeline 127b5eb3e284abe55f3298fb904399d0 https://www.encodeproject.org/files/ENCFF025KAP/@@download/ENCFF025KAP.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF816SMQ bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF772FDS 13354710 ENCODE Processing Pipeline 207d58e6c29836529f9581b902212315 https://www.encodeproject.org/files/ENCFF816SMQ/@@download/ENCFF816SMQ.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF029UJN bigBed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF921MFR 906816 ENCODE Processing Pipeline fd650d7fd71c725f3872e94ba2a37db9 https://www.encodeproject.org/files/ENCFF029UJN/@@download/ENCFF029UJN.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF706KJG bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF879YMO, ENCFF943EGP 6713508 ENCODE Processing Pipeline 8ab1a06a34c87c9b6964ada0ef7d5528 https://www.encodeproject.org/files/ENCFF706KJG/@@download/ENCFF706KJG.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF653NEL bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF706KJG 13257343 ENCODE Processing Pipeline 875667f4ca29352b975e6ac7e90c1ba6 https://www.encodeproject.org/files/ENCFF653NEL/@@download/ENCFF653NEL.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF921MFR bed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF419RSJ, ENCFF667GBN, ENCFF706KJG, ENCFF772FDS 428582 ENCODE Processing Pipeline 6e4173c64e6f75955338a92a8d36a1ee https://www.encodeproject.org/files/ENCFF921MFR/@@download/ENCFF921MFR.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF153TQR bed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF419RSJ, ENCFF667GBN, ENCFF706KJG, ENCFF772FDS 571266 ENCODE Processing Pipeline 902ba5264dc796ba50eaba65c703de3c https://www.encodeproject.org/files/ENCFF153TQR/@@download/ENCFF153TQR.bed.gz GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF260SXC bigBed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF153TQR 1095728 ENCODE Processing Pipeline 0a76e541db8d5e216952b214ae4cd252 https://www.encodeproject.org/files/ENCFF260SXC/@@download/ENCFF260SXC.bigBed GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF599BPE bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF287SKW, ENCFF360QES, ENCFF769NOS, ENCFF941TZZ 1918992667 ENCODE Processing Pipeline 9346b40a446a3f0e92dbeaeabd0b0c36 https://www.encodeproject.org/files/ENCFF599BPE/@@download/ENCFF599BPE.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF291UWH bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 1145348078 ENCODE Processing Pipeline 6cca6edf94f8f28925959aaa3ae1b8db https://www.encodeproject.org/files/ENCFF291UWH/@@download/ENCFF291UWH.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF098LKI bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 1084663556 ENCODE Processing Pipeline 9242e340825e6e631900c9b9b00a305f https://www.encodeproject.org/files/ENCFF098LKI/@@download/ENCFF098LKI.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF200NLK bigWig signal p-value ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF769NOS, ENCFF941TZZ 1509509841 ENCODE Processing Pipeline 6523da7b39f6cd6375afdd6b2146f3ec https://www.encodeproject.org/files/ENCFF200NLK/@@download/ENCFF200NLK.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF383LHA bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF769NOS, ENCFF941TZZ 1412764494 ENCODE Processing Pipeline e18268eaef4b28b834c9e1502344d315 https://www.encodeproject.org/files/ENCFF383LHA/@@download/ENCFF383LHA.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF454HNA bigWig fold change over control ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF287SKW, ENCFF360QES, ENCFF769NOS, ENCFF941TZZ 2293883740 ENCODE Processing Pipeline e5076418983cae82911c7cbcfc0dfe40 https://www.encodeproject.org/files/ENCFF454HNA/@@download/ENCFF454HNA.bigWig hg19 released mild to moderate bottlenecking mismatched file status ENCFF249ALV bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF114HTB 13381302 ENCODE Processing Pipeline 6038f6fe91a01cbb53a61cc8238d7d3a https://www.encodeproject.org/files/ENCFF249ALV/@@download/ENCFF249ALV.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF834XJD bigBed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF369JYP 910288 ENCODE Processing Pipeline 58e359a02f8df0da1618d9ddbbcbc154 https://www.encodeproject.org/files/ENCFF834XJD/@@download/ENCFF834XJD.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF114HTB bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 ENCFF769NOS, ENCFF941TZZ 6696848 ENCODE Processing Pipeline d0ffab3876170b7ea169e10020ebe9dd https://www.encodeproject.org/files/ENCFF114HTB/@@download/ENCFF114HTB.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF405WZX bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF287SKW, ENCFF360QES, ENCFF769NOS, ENCFF941TZZ 7230884 ENCODE Processing Pipeline ab0c59b74c82a808bcbdfcb16c80755a https://www.encodeproject.org/files/ENCFF405WZX/@@download/ENCFF405WZX.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF611MEN bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF648GNP 13460339 ENCODE Processing Pipeline 321209feb1bf9ce4085f51dc9c4a26ec https://www.encodeproject.org/files/ENCFF611MEN/@@download/ENCFF611MEN.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF369JYP bed narrowPeak conservative idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF001TDO, ENCFF114HTB, ENCFF405WZX, ENCFF648GNP 425605 ENCODE Processing Pipeline b940dcf0357a3e2c23b04b0f709bff55 https://www.encodeproject.org/files/ENCFF369JYP/@@download/ENCFF369JYP.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF648GNP bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 6703968 ENCODE Processing Pipeline aeace92b89e06d209a022e199914e5ce https://www.encodeproject.org/files/ENCFF648GNP/@@download/ENCFF648GNP.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF066NBV bigBed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF405WZX 13400506 ENCODE Processing Pipeline bbfd4d400b4cd5824df759c7c39c8678 https://www.encodeproject.org/files/ENCFF066NBV/@@download/ENCFF066NBV.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF637PDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF544NXC 1139703 ENCODE Processing Pipeline 47f7aaea9f1832d8b708c0a83dcdd96a https://www.encodeproject.org/files/ENCFF637PDQ/@@download/ENCFF637PDQ.bigBed hg19 released mild to moderate bottlenecking mismatched file status ENCFF544NXC bed narrowPeak optimal idr thresholded peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2, 3 ENCFF001TDO, ENCFF114HTB, ENCFF405WZX, ENCFF648GNP 570474 ENCODE Processing Pipeline b1e487a875b568f4b5945bd06240fbe7 https://www.encodeproject.org/files/ENCFF544NXC/@@download/ENCFF544NXC.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF255DCC fastq reads ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF651FCK 2022989644 Michael Snyder, Stanford 2110ef74a067bd497a9b777cf716a616 SRA:SRR6213523 https://www.encodeproject.org/files/ENCFF255DCC/@@download/ENCFF255DCC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF651FCK fastq reads ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF255DCC 2001184423 Michael Snyder, Stanford 5ce312946c5847e547b6f21a8d0e56a7 SRA:SRR6213523 https://www.encodeproject.org/files/ENCFF651FCK/@@download/ENCFF651FCK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF688OBA fastq reads ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF460ZPX 2642459087 Michael Snyder, Stanford b75897012b10eba9155ac4ebbbff9292 SRA:SRR6213524 https://www.encodeproject.org/files/ENCFF688OBA/@@download/ENCFF688OBA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF460ZPX fastq reads ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF688OBA 2679302192 Michael Snyder, Stanford 0c30c3a778f756de311d41f5c79fbb3f SRA:SRR6213524 https://www.encodeproject.org/files/ENCFF460ZPX/@@download/ENCFF460ZPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF731IWM bam unfiltered alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF255DCC, ENCFF651FCK, ENCFF807MUK 4145392534 ENCODE Processing Pipeline c17d1622cc4689b1ff4aa4268822be53 https://www.encodeproject.org/files/ENCFF731IWM/@@download/ENCFF731IWM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF093DMB bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF255DCC, ENCFF651FCK, ENCFF807MUK 3552254533 ENCODE Processing Pipeline db647d8d0112e75a8f0a5d05b7eb351b https://www.encodeproject.org/files/ENCFF093DMB/@@download/ENCFF093DMB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF931WBA bam unfiltered alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF255DCC, ENCFF643CGH, ENCFF651FCK 4151476596 ENCODE Processing Pipeline 23d9d59ddc744ce68f60930c1c0519d5 https://www.encodeproject.org/files/ENCFF931WBA/@@download/ENCFF931WBA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF571NTO bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF255DCC, ENCFF643CGH, ENCFF651FCK 3553706130 ENCODE Processing Pipeline 0afd6a13bb83a443981bb59ec6f8cbe4 https://www.encodeproject.org/files/ENCFF571NTO/@@download/ENCFF571NTO.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF912IMX bam unfiltered alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF460ZPX, ENCFF688OBA, ENCFF807MUK 5392746249 ENCODE Processing Pipeline ac00c4f7101ee3a8533ea06713a2bfc1 https://www.encodeproject.org/files/ENCFF912IMX/@@download/ENCFF912IMX.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF236UXG bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF460ZPX, ENCFF688OBA, ENCFF807MUK 4731796382 ENCODE Processing Pipeline b16a5fdbfac751ec37b655304028eca3 https://www.encodeproject.org/files/ENCFF236UXG/@@download/ENCFF236UXG.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF658OAR bam unfiltered alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF460ZPX, ENCFF643CGH, ENCFF688OBA 5400234358 ENCODE Processing Pipeline b0d6aba3b3ba47ca4a029ddea5d8e092 https://www.encodeproject.org/files/ENCFF658OAR/@@download/ENCFF658OAR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF333OOX bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF460ZPX, ENCFF643CGH, ENCFF688OBA 4733578141 ENCODE Processing Pipeline ee1ac351df7fde6b3a52c9d7e39df6cd https://www.encodeproject.org/files/ENCFF333OOX/@@download/ENCFF333OOX.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF579ZQX bigWig signal p-value ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF236UXG 1202861801 ENCODE Processing Pipeline 6dd460e75aacc2ac4eeeade59c102424 https://www.encodeproject.org/files/ENCFF579ZQX/@@download/ENCFF579ZQX.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF532NCE bigWig signal p-value ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF093DMB, ENCFF236UXG 1404438230 ENCODE Processing Pipeline c1c976cdaeebd7af4e89280d9b38791a https://www.encodeproject.org/files/ENCFF532NCE/@@download/ENCFF532NCE.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF163GYB bigWig signal p-value ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF093DMB 1188002072 ENCODE Processing Pipeline 1c47bd64515f4b909f8875b75087f93a https://www.encodeproject.org/files/ENCFF163GYB/@@download/ENCFF163GYB.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF163NZH bigWig fold change over control ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF093DMB 1192612837 ENCODE Processing Pipeline 77dab11c45f4e9b9a93bc834c1ebaf85 https://www.encodeproject.org/files/ENCFF163NZH/@@download/ENCFF163NZH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF594LOD bigWig fold change over control ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF093DMB, ENCFF236UXG 1880624427 ENCODE Processing Pipeline 39d4817d7c3bd55b3261e9604ec2005f https://www.encodeproject.org/files/ENCFF594LOD/@@download/ENCFF594LOD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF338IUM bigWig fold change over control ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF236UXG 1448737443 ENCODE Processing Pipeline 5a2b13203b88d7cf0d3fb7aa28effd60 https://www.encodeproject.org/files/ENCFF338IUM/@@download/ENCFF338IUM.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF456MQE bigBed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF831NSD 10978607 ENCODE Processing Pipeline 2366d553ed7b498eff064e8134904659 https://www.encodeproject.org/files/ENCFF456MQE/@@download/ENCFF456MQE.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF773OIA bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF093DMB 6070199 ENCODE Processing Pipeline c4889c8ab896fd8f7878afc05d64af71 https://www.encodeproject.org/files/ENCFF773OIA/@@download/ENCFF773OIA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF780MAD bigBed narrowPeak conservative idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF272OOP 103659 ENCODE Processing Pipeline d7d6f879d9edcf59bd5db7ec77475927 https://www.encodeproject.org/files/ENCFF780MAD/@@download/ENCFF780MAD.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF396TJH bigBed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF466FRV 11175618 ENCODE Processing Pipeline da6f5f863be4f7148ec4a6c42e2c3dfe https://www.encodeproject.org/files/ENCFF396TJH/@@download/ENCFF396TJH.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF454YSP bed narrowPeak optimal idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF466FRV, ENCFF773OIA, ENCFF831NSD 38007 ENCODE Processing Pipeline 4f3f6f5e322490bed118e9a3ea1d3a3d https://www.encodeproject.org/files/ENCFF454YSP/@@download/ENCFF454YSP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF082PJN bigBed narrowPeak optimal idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF454YSP 118264 ENCODE Processing Pipeline 296a435d49d692ed6393602ceb14875b https://www.encodeproject.org/files/ENCFF082PJN/@@download/ENCFF082PJN.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF831NSD bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF093DMB, ENCFF236UXG 6967458 ENCODE Processing Pipeline 2f4d44ffbf6e8a2daac8eb5dd613e871 https://www.encodeproject.org/files/ENCFF831NSD/@@download/ENCFF831NSD.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF466FRV bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF236UXG 6665407 ENCODE Processing Pipeline 75952aafe79bafb996d4ec2b95da7b9c https://www.encodeproject.org/files/ENCFF466FRV/@@download/ENCFF466FRV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF272OOP bed narrowPeak conservative idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF466FRV, ENCFF773OIA, ENCFF831NSD 28003 ENCODE Processing Pipeline 362dc6def7f8fa8ecb69f70123345179 https://www.encodeproject.org/files/ENCFF272OOP/@@download/ENCFF272OOP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF824TPS bigBed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF773OIA 11269405 ENCODE Processing Pipeline cf26f3756b9f05cb896a48be1dc4a4e9 https://www.encodeproject.org/files/ENCFF824TPS/@@download/ENCFF824TPS.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF400ELK bigWig signal p-value ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF571NTO 1307031818 ENCODE Processing Pipeline 336917ad008269737e1fdf0302c0bf4f https://www.encodeproject.org/files/ENCFF400ELK/@@download/ENCFF400ELK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF752MRF bigWig signal p-value ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF333OOX, ENCFF571NTO 1557227053 ENCODE Processing Pipeline e3aa2077ba9ac7ca2837dc5ccdaa6cb6 https://www.encodeproject.org/files/ENCFF752MRF/@@download/ENCFF752MRF.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF352DAM bigWig fold change over control ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF571NTO 1213643071 ENCODE Processing Pipeline bd4adeb215993b1fe004cee4fc236985 https://www.encodeproject.org/files/ENCFF352DAM/@@download/ENCFF352DAM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF159NNA bigWig fold change over control ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF333OOX, ENCFF571NTO 1892493430 ENCODE Processing Pipeline 2bd6e89dd3f20e46116316bd39883466 https://www.encodeproject.org/files/ENCFF159NNA/@@download/ENCFF159NNA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF524BBO bigWig fold change over control ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF333OOX 1447792159 ENCODE Processing Pipeline 998aa135fa1beefcd1452760e296d752 https://www.encodeproject.org/files/ENCFF524BBO/@@download/ENCFF524BBO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF724CWY bigWig signal p-value ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF333OOX 1361500985 ENCODE Processing Pipeline 0db4a6f4fe0ea0d823881d86f9f4df9b https://www.encodeproject.org/files/ENCFF724CWY/@@download/ENCFF724CWY.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF191OSS bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF333OOX 6664539 ENCODE Processing Pipeline c318820d865ca4b2fa00bed0871e7912 https://www.encodeproject.org/files/ENCFF191OSS/@@download/ENCFF191OSS.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF630AYE bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF333OOX, ENCFF571NTO 6970622 ENCODE Processing Pipeline c4db1bd68a061dfd18503889a07cff80 https://www.encodeproject.org/files/ENCFF630AYE/@@download/ENCFF630AYE.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF385EAO bigBed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF191OSS 11185551 ENCODE Processing Pipeline ebdbc3c587c625300331d62802fa2117 https://www.encodeproject.org/files/ENCFF385EAO/@@download/ENCFF385EAO.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF414PTW bigBed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF630AYE 10982242 ENCODE Processing Pipeline 446591b13b9fd5b8785e1785cdde6d91 https://www.encodeproject.org/files/ENCFF414PTW/@@download/ENCFF414PTW.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF211IIT bed narrowPeak conservative idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF191OSS, ENCFF419RSJ, ENCFF630AYE, ENCFF633EGC 28103 ENCODE Processing Pipeline 6cedfe6adfb374d7ad745d923bcb279f https://www.encodeproject.org/files/ENCFF211IIT/@@download/ENCFF211IIT.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF990JDQ bigBed narrowPeak conservative idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF211IIT 104197 ENCODE Processing Pipeline 40f2f95007f3e009129379f2b3f6ca91 https://www.encodeproject.org/files/ENCFF990JDQ/@@download/ENCFF990JDQ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF407RMG bed narrowPeak optimal idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF191OSS, ENCFF419RSJ, ENCFF630AYE, ENCFF633EGC 39241 ENCODE Processing Pipeline 7fc6b7858feabf054ad3a42663b5033c https://www.encodeproject.org/files/ENCFF407RMG/@@download/ENCFF407RMG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF760RMB bigBed narrowPeak optimal idr thresholded peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF407RMG 120806 ENCODE Processing Pipeline dda984c572152841d57033c00c4dff59 https://www.encodeproject.org/files/ENCFF760RMB/@@download/ENCFF760RMB.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF633EGC bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF571NTO 6069795 ENCODE Processing Pipeline 81a3f01d690e5e18529ab2611e4547ea https://www.encodeproject.org/files/ENCFF633EGC/@@download/ENCFF633EGC.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF719PTE bigBed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF633EGC 11285669 ENCODE Processing Pipeline 610856d19e0117c9a2a8e0e7c6a13947 https://www.encodeproject.org/files/ENCFF719PTE/@@download/ENCFF719PTE.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF002EVT fastq reads ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 1 36 single-ended 1062884453 Michael Snyder, Stanford 9fdfc8a091d7ff6c4b29c2c16d198b97 SRA:SRR5111930 https://www.encodeproject.org/files/ENCFF002EVT/@@download/ENCFF002EVT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF492DKQ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF002EVU fastq reads ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 1 36 single-ended 869934580 Michael Snyder, Stanford b65ea52f3bf4c5e56c28dc6c433fa0c2 SRA:SRR5111929 https://www.encodeproject.org/files/ENCFF002EVU/@@download/ENCFF002EVU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF584LXI/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF073KSR bam unfiltered alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVT, ENCFF807MUK 1286713906 ENCODE Processing Pipeline c2a6864aefcd65f1bf0f12273673e8d5 https://www.encodeproject.org/files/ENCFF073KSR/@@download/ENCFF073KSR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF085JGZ bam unfiltered alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVT, ENCFF643CGH 1293358966 ENCODE Processing Pipeline d5fc4691c576293ee117bc2e24e60854 https://www.encodeproject.org/files/ENCFF085JGZ/@@download/ENCFF085JGZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF898FWJ bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVT, ENCFF643CGH 804144767 ENCODE Processing Pipeline f8c47228c93a4449dec07a2acc532370 https://www.encodeproject.org/files/ENCFF898FWJ/@@download/ENCFF898FWJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF391YGA bam unfiltered alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVU, ENCFF643CGH 956485507 ENCODE Processing Pipeline 835737256083cd687eec5c33215c6735 https://www.encodeproject.org/files/ENCFF391YGA/@@download/ENCFF391YGA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF870JSA bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVU, ENCFF643CGH 425762134 ENCODE Processing Pipeline e58cffe80ac92b69e62ed143dad490a5 https://www.encodeproject.org/files/ENCFF870JSA/@@download/ENCFF870JSA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF216ADV bam unfiltered alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVU, ENCFF807MUK 951709267 ENCODE Processing Pipeline 494ecda25d725b34661576f2f4df4075 https://www.encodeproject.org/files/ENCFF216ADV/@@download/ENCFF216ADV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF422DHE bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVU, ENCFF807MUK 426019463 ENCODE Processing Pipeline ea85d342e759492cfd7714a1ff8e5a31 https://www.encodeproject.org/files/ENCFF422DHE/@@download/ENCFF422DHE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF505MRY bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVT, ENCFF807MUK 804457823 ENCODE Processing Pipeline d30e42aa59c62f892058a7e70c2949b4 https://www.encodeproject.org/files/ENCFF505MRY/@@download/ENCFF505MRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF479LYA bigWig signal p-value ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF422DHE, ENCFF880YHS 469756661 ENCODE Processing Pipeline 8a3c847eb3b28f532b33a0f351f38b6a https://www.encodeproject.org/files/ENCFF479LYA/@@download/ENCFF479LYA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF474PWA bigWig signal p-value ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF505MRY 539666408 ENCODE Processing Pipeline b2db9be4906adb1c5780334c0c267c68 https://www.encodeproject.org/files/ENCFF474PWA/@@download/ENCFF474PWA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF535SHH bigWig signal p-value ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF422DHE, ENCFF485QJI, ENCFF505MRY, ENCFF880YHS 939064002 ENCODE Processing Pipeline 9f76fe47cebfa2e272d0495fe0e0015c https://www.encodeproject.org/files/ENCFF535SHH/@@download/ENCFF535SHH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF782GMN bigWig fold change over control ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF422DHE, ENCFF880YHS 287851692 ENCODE Processing Pipeline 99c7b5545e90f4ce04d86bbd4a5d080c https://www.encodeproject.org/files/ENCFF782GMN/@@download/ENCFF782GMN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF644WLR bigWig fold change over control ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF505MRY 424764517 ENCODE Processing Pipeline cc53b43b92db9917232b49eb6c5f9043 https://www.encodeproject.org/files/ENCFF644WLR/@@download/ENCFF644WLR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF324AFY bigWig fold change over control ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF422DHE, ENCFF485QJI, ENCFF505MRY, ENCFF880YHS 850156511 ENCODE Processing Pipeline aecd65d7faf9c2fd88c66c95d3ea541f https://www.encodeproject.org/files/ENCFF324AFY/@@download/ENCFF324AFY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF147QXV bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF505MRY 3968880 ENCODE Processing Pipeline a478f59a397c2cf367c8b1fe97c6a924 https://www.encodeproject.org/files/ENCFF147QXV/@@download/ENCFF147QXV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF577IGI bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF422DHE, ENCFF485QJI, ENCFF505MRY, ENCFF880YHS 5004401 ENCODE Processing Pipeline a593199fafe7e5a81107460081bc2348 https://www.encodeproject.org/files/ENCFF577IGI/@@download/ENCFF577IGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF306SXM bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF422DHE, ENCFF880YHS 3733913 ENCODE Processing Pipeline a224326c7572386905d0b2f8fbdc381f https://www.encodeproject.org/files/ENCFF306SXM/@@download/ENCFF306SXM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF625AUG bed narrowPeak conservative idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF147QXV, ENCFF306SXM, ENCFF577IGI 9113 ENCODE Processing Pipeline 08c491438a454ed2f348e76786241483 https://www.encodeproject.org/files/ENCFF625AUG/@@download/ENCFF625AUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF254NZJ bigBed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF306SXM 8255180 ENCODE Processing Pipeline d72261919618adedc46077738a708e0b https://www.encodeproject.org/files/ENCFF254NZJ/@@download/ENCFF254NZJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF736FZN bigBed narrowPeak conservative idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF625AUG 56742 ENCODE Processing Pipeline 00b469cc37807f7c775e3bea3f529ffa https://www.encodeproject.org/files/ENCFF736FZN/@@download/ENCFF736FZN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF889WRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF757YVY 60341 ENCODE Processing Pipeline 0d4eb67d3e52aca4ca542ab500018df1 https://www.encodeproject.org/files/ENCFF889WRZ/@@download/ENCFF889WRZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF285OBI bigBed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF147QXV 10935290 ENCODE Processing Pipeline 5796b850a493e6e33a0f1d71193a62bd https://www.encodeproject.org/files/ENCFF285OBI/@@download/ENCFF285OBI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF757YVY bed narrowPeak optimal idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF147QXV, ENCFF306SXM, ENCFF577IGI 11970 ENCODE Processing Pipeline f018341d3a30509fa7fc898006745013 https://www.encodeproject.org/files/ENCFF757YVY/@@download/ENCFF757YVY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF373ZTY bigBed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF577IGI 11780097 ENCODE Processing Pipeline 8cdc5079f5e9651dc08cce21992485e2 https://www.encodeproject.org/files/ENCFF373ZTY/@@download/ENCFF373ZTY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF046HVR bigWig signal p-value ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF898FWJ, ENCFF928IDQ 560069549 ENCODE Processing Pipeline b68bd8131c39b8c94be0cc7a82472dac https://www.encodeproject.org/files/ENCFF046HVR/@@download/ENCFF046HVR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF139JUR bigWig signal p-value ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF195PNZ, ENCFF870JSA 447501591 ENCODE Processing Pipeline 9cc27ebef33550ec49f1760ca1be093d https://www.encodeproject.org/files/ENCFF139JUR/@@download/ENCFF139JUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF809WFD bigWig signal p-value ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF195PNZ, ENCFF870JSA, ENCFF898FWJ, ENCFF928IDQ 1016092187 ENCODE Processing Pipeline 47e1c84b41eb62794839644ae7949dec https://www.encodeproject.org/files/ENCFF809WFD/@@download/ENCFF809WFD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF878ADH bigWig fold change over control ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF195PNZ, ENCFF870JSA 287793528 ENCODE Processing Pipeline 761f6728eba6c619195828ca6e0f65ab https://www.encodeproject.org/files/ENCFF878ADH/@@download/ENCFF878ADH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF512XYU bigWig fold change over control ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF898FWJ, ENCFF928IDQ 424833129 ENCODE Processing Pipeline 95455c527804c22cc9407c315a348c52 https://www.encodeproject.org/files/ENCFF512XYU/@@download/ENCFF512XYU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF090ZGT bigWig fold change over control ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF195PNZ, ENCFF870JSA, ENCFF898FWJ, ENCFF928IDQ 867748513 ENCODE Processing Pipeline b602adb5f7496ccb420e3a65ca7e8ca6 https://www.encodeproject.org/files/ENCFF090ZGT/@@download/ENCFF090ZGT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF024KSO bigBed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF196XWS 8060514 ENCODE Processing Pipeline 8f1b032bc23117d99ebc9b9005ca3e36 https://www.encodeproject.org/files/ENCFF024KSO/@@download/ENCFF024KSO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF853RJB bigBed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF121UGT 10684552 ENCODE Processing Pipeline 3707750e6763707ed64a03a59a662e98 https://www.encodeproject.org/files/ENCFF853RJB/@@download/ENCFF853RJB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF681EXR bigBed narrowPeak conservative idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF407HRS 57217 ENCODE Processing Pipeline 21a4d7870856a6dc658c0c12ee420ec5 https://www.encodeproject.org/files/ENCFF681EXR/@@download/ENCFF681EXR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF196XWS bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF195PNZ, ENCFF870JSA 3647409 ENCODE Processing Pipeline e96999704f861b2941112efc909cf389 https://www.encodeproject.org/files/ENCFF196XWS/@@download/ENCFF196XWS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF407HRS bed narrowPeak conservative idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF121UGT, ENCFF196XWS, ENCFF419RSJ, ENCFF795HAR 9189 ENCODE Processing Pipeline 7a682a0231b1133ef712a9a532b42966 https://www.encodeproject.org/files/ENCFF407HRS/@@download/ENCFF407HRS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF121UGT bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF898FWJ, ENCFF928IDQ 3856012 ENCODE Processing Pipeline 80061fd2e7acace2b0e13e3e1a59e6b4 https://www.encodeproject.org/files/ENCFF121UGT/@@download/ENCFF121UGT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF795HAR bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF195PNZ, ENCFF870JSA, ENCFF898FWJ, ENCFF928IDQ 4809610 ENCODE Processing Pipeline 7f9b0d06569690ca4b6f0913e7e088fb https://www.encodeproject.org/files/ENCFF795HAR/@@download/ENCFF795HAR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF271SZD bigBed narrowPeak optimal idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF687IUD 61378 ENCODE Processing Pipeline 9aba0c3ff01c6cab8e83e921301ee187 https://www.encodeproject.org/files/ENCFF271SZD/@@download/ENCFF271SZD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF665XXY bigBed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF795HAR 11692460 ENCODE Processing Pipeline 5691e849686d64dc22b564b07ecc019b https://www.encodeproject.org/files/ENCFF665XXY/@@download/ENCFF665XXY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF687IUD bed narrowPeak optimal idr thresholded peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF121UGT, ENCFF196XWS, ENCFF419RSJ, ENCFF795HAR 12487 ENCODE Processing Pipeline f18e4626be0e38559bdbf032045ae0e0 https://www.encodeproject.org/files/ENCFF687IUD/@@download/ENCFF687IUD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF000QLH bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QLT 1229980445 Richard Myers, HAIB 0eb5b395e1819a0a8c1a36934a5dc999 https://www.encodeproject.org/files/ENCFF000QLH/@@download/ENCFF000QLH.bam hg19 archived mild to moderate bottlenecking, low read depth ENCFF000QLI bigBed broadPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UML 983596 Richard Myers, HAIB 622a2e6b67da764483613bc099858e2c https://www.encodeproject.org/files/ENCFF000QLI/@@download/ENCFF000QLI.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF000QLJ bigBed broadPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMN 1022040 Richard Myers, HAIB a2d69f406bd28e7285be22cffaa421f7 https://www.encodeproject.org/files/ENCFF000QLJ/@@download/ENCFF000QLJ.bigBed hg19 archived mild to moderate bottlenecking, low read depth ENCFF000QLK bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QLW 1823923002 Richard Myers, HAIB f1dbbf16bbfc244caaa19832c75fee3c https://www.encodeproject.org/files/ENCFF000QLK/@@download/ENCFF000QLK.bam hg19 archived mild to moderate bottlenecking, low read depth ENCFF000QLM bigWig raw signal ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 212726627 Richard Myers, HAIB 0eb9a3add62df048523cde20bab92eca https://www.encodeproject.org/files/ENCFF000QLM/@@download/ENCFF000QLM.bigWig hg19 archived mild to moderate bottlenecking, low read depth missing derived_from ENCFF000QLN bigWig raw signal ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 111768382 Richard Myers, HAIB ebabd699002619a7f20341c054e62d16 https://www.encodeproject.org/files/ENCFF000QLN/@@download/ENCFF000QLN.bigWig hg19 archived mild to moderate bottlenecking, low read depth missing derived_from ENCFF000QLT fastq reads ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1324143320 Richard Myers, HAIB 8a578ac4f7bff6bc953834e7a15f7daa https://www.encodeproject.org/files/ENCFF000QLT/@@download/ENCFF000QLT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released mild to moderate bottlenecking, low read depth ENCFF000QLW fastq reads ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1927951670 Richard Myers, HAIB 377ea32d9cd8f4ae9c2b9cae3d49df3c https://www.encodeproject.org/files/ENCFF000QLW/@@download/ENCFF000QLW.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released mild to moderate bottlenecking, low read depth ENCFF001UML bed broadPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 636381 Richard Myers, HAIB fa558ccebbb598dfe04b77323b7f824d https://www.encodeproject.org/files/ENCFF001UML/@@download/ENCFF001UML.bed.gz hg19 archived mild to moderate bottlenecking, low read depth missing derived_from ENCFF001UMN bed broadPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 639275 Richard Myers, HAIB ef2a231e111392005b60548a3e312265 https://www.encodeproject.org/files/ENCFF001UMN/@@download/ENCFF001UMN.bed.gz hg19 archived mild to moderate bottlenecking, low read depth missing derived_from ENCFF118KBU bam unfiltered alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QLT, ENCFF643CGH 1302072974 ENCODE Processing Pipeline a12040c22a1ac10687a2a732d63107dd https://www.encodeproject.org/files/ENCFF118KBU/@@download/ENCFF118KBU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF796FNS bam unfiltered alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QLT, ENCFF807MUK 1299297146 ENCODE Processing Pipeline 2ed1bd6b7810b86026cc487588cccb71 https://www.encodeproject.org/files/ENCFF796FNS/@@download/ENCFF796FNS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF753KJD bam unfiltered alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QLW, ENCFF643CGH 1945711944 ENCODE Processing Pipeline 6f9c2ff1563b31b4db859cd0a86dcfc1 https://www.encodeproject.org/files/ENCFF753KJD/@@download/ENCFF753KJD.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF433JUQ bam unfiltered alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QLW, ENCFF807MUK 1941018765 ENCODE Processing Pipeline 1885539778ffeac9e97fa7ca29af688c https://www.encodeproject.org/files/ENCFF433JUQ/@@download/ENCFF433JUQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF335UKS bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QLT, ENCFF807MUK 760013781 ENCODE Processing Pipeline f0d969e8f574012e6fb4afa6da702e7b https://www.encodeproject.org/files/ENCFF335UKS/@@download/ENCFF335UKS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF049OXC bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QLT, ENCFF643CGH 759570834 ENCODE Processing Pipeline 8cc6a1993806b54c68f539bcb8c0a15f https://www.encodeproject.org/files/ENCFF049OXC/@@download/ENCFF049OXC.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF959AJO bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QLW, ENCFF643CGH 1275941725 ENCODE Processing Pipeline 08b8ca0b6ef292c4b2645cb54fbffebc https://www.encodeproject.org/files/ENCFF959AJO/@@download/ENCFF959AJO.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF754DME bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QLW, ENCFF807MUK 1276541128 ENCODE Processing Pipeline 84826ea47b7d83ca8e1da1915c50ef73 https://www.encodeproject.org/files/ENCFF754DME/@@download/ENCFF754DME.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF041CAY bigWig signal p-value ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF335UKS, ENCFF479YGR, ENCFF719RCX, ENCFF754DME 929188648 ENCODE Processing Pipeline d93e0e778ca243aecca21df4f7f3afb3 https://www.encodeproject.org/files/ENCFF041CAY/@@download/ENCFF041CAY.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF298KPS bigWig signal p-value ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF479YGR, ENCFF719RCX, ENCFF754DME 785811472 ENCODE Processing Pipeline 1decd943ea3648444f30d0e483636a7d https://www.encodeproject.org/files/ENCFF298KPS/@@download/ENCFF298KPS.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF465SYN bigWig signal p-value ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF335UKS, ENCFF719RCX 461246592 ENCODE Processing Pipeline 447cbb75d888dde25906a6de46df9c5d https://www.encodeproject.org/files/ENCFF465SYN/@@download/ENCFF465SYN.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF430DVP bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 5251909 ENCODE Processing Pipeline dd29ab82ef96d4b066fb6e1b987ac9af https://www.encodeproject.org/files/ENCFF430DVP/@@download/ENCFF430DVP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF942TCG bed narrowPeak optimal idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF430DVP, ENCFF483SPH, ENCFF889OQM 909194 ENCODE Processing Pipeline df8e06eabcef14bb91558c96f28066d6 https://www.encodeproject.org/files/ENCFF942TCG/@@download/ENCFF942TCG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF048DWM bigWig signal p-value ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 618699954 ENCODE Processing Pipeline 298d4eb05bf64b06f085767f561e61ce https://www.encodeproject.org/files/ENCFF048DWM/@@download/ENCFF048DWM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF417XYW bigWig fold change over control ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 574500239 ENCODE Processing Pipeline bdb19c9c2b0e32c306504d5d5a2be760 https://www.encodeproject.org/files/ENCFF417XYW/@@download/ENCFF417XYW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF616XOF bigBed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF664CSQ 11709754 ENCODE Processing Pipeline af28eb0617e468f43c2781e181f743d3 https://www.encodeproject.org/files/ENCFF616XOF/@@download/ENCFF616XOF.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF444IOW bed narrowPeak conservative idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF664CSQ, ENCFF762LDF, ENCFF768KKE 877515 ENCODE Processing Pipeline 8776eae2fba762ef78261a690b14b4e8 https://www.encodeproject.org/files/ENCFF444IOW/@@download/ENCFF444IOW.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF491LKK bigWig fold change over control ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF049OXC, ENCFF139XSQ 298023103 ENCODE Processing Pipeline 4ef4ba389abdab7884e82aa007521d22 https://www.encodeproject.org/files/ENCFF491LKK/@@download/ENCFF491LKK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF586KIH bed narrowPeak optimal idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF664CSQ, ENCFF762LDF, ENCFF768KKE 916340 ENCODE Processing Pipeline 5a8e504b171a26058efc3a830eef1183 https://www.encodeproject.org/files/ENCFF586KIH/@@download/ENCFF586KIH.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF324CIU bigWig signal p-value ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF049OXC, ENCFF139XSQ 400586099 ENCODE Processing Pipeline a28cd78c2e3b1355902c45a2d9e60c3c https://www.encodeproject.org/files/ENCFF324CIU/@@download/ENCFF324CIU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF707ROR bigWig fold change over control ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF335UKS, ENCFF719RCX 299468995 ENCODE Processing Pipeline 04dc031b0fb6df641ee15ab023bc6611 https://www.encodeproject.org/files/ENCFF707ROR/@@download/ENCFF707ROR.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF762LDF bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF335UKS, ENCFF719RCX 4135581 ENCODE Processing Pipeline 4fd1ec871d2c9fd0acf45b090d6098f8 https://www.encodeproject.org/files/ENCFF762LDF/@@download/ENCFF762LDF.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF483SPH bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF049OXC, ENCFF139XSQ 4132264 ENCODE Processing Pipeline 8713605beaae5aef9f132b26f8650e9b https://www.encodeproject.org/files/ENCFF483SPH/@@download/ENCFF483SPH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF118FLA bigWig fold change over control ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF479YGR, ENCFF719RCX, ENCFF754DME 571721859 ENCODE Processing Pipeline 6c6a05fbd0394c06a04ebb0ab7083f04 https://www.encodeproject.org/files/ENCFF118FLA/@@download/ENCFF118FLA.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF516HJR bigWig signal p-value ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF049OXC, ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 735759889 ENCODE Processing Pipeline 83deddc7ade7a2fd494dde3958f7e89a https://www.encodeproject.org/files/ENCFF516HJR/@@download/ENCFF516HJR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF812KNI bigWig fold change over control ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF335UKS, ENCFF479YGR, ENCFF719RCX, ENCFF754DME 785856135 ENCODE Processing Pipeline 53af4436ec22730655f90fcc2fb93277 https://www.encodeproject.org/files/ENCFF812KNI/@@download/ENCFF812KNI.bigWig hg19 released mild to moderate bottlenecking, low read depth ENCFF400VSS bigBed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF762LDF 8218849 ENCODE Processing Pipeline 893cfa47b8d1d1a8e046441f2e6d8302 https://www.encodeproject.org/files/ENCFF400VSS/@@download/ENCFF400VSS.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF181YWG bigBed narrowPeak conservative idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF444IOW 1562444 ENCODE Processing Pipeline 2b9456e01c5e12958683f9ec920b4c64 https://www.encodeproject.org/files/ENCFF181YWG/@@download/ENCFF181YWG.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF991NDB bigWig fold change over control ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF049OXC, ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 781606636 ENCODE Processing Pipeline 36909a2987a7d3b5237402bc0f7f3419 https://www.encodeproject.org/files/ENCFF991NDB/@@download/ENCFF991NDB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth ENCFF664CSQ bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF335UKS, ENCFF479YGR, ENCFF719RCX, ENCFF754DME 5589493 ENCODE Processing Pipeline cc57ed24ee5f77c54dae094d7321fca1 https://www.encodeproject.org/files/ENCFF664CSQ/@@download/ENCFF664CSQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF282OIK bigBed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF768KKE 11301968 ENCODE Processing Pipeline 1481ae62c79a91b8fb2fc9251244a4d3 https://www.encodeproject.org/files/ENCFF282OIK/@@download/ENCFF282OIK.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF543URL bigBed narrowPeak optimal idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF586KIH 1617023 ENCODE Processing Pipeline 66be12fbcbbec98c5f12b3bdf7545714 https://www.encodeproject.org/files/ENCFF543URL/@@download/ENCFF543URL.bigBed hg19 released mild to moderate bottlenecking, low read depth ENCFF889OQM bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF049OXC, ENCFF139XSQ, ENCFF927WZT, ENCFF959AJO 5568774 ENCODE Processing Pipeline 4b86220dd0663e53c2654237d5b3c86f https://www.encodeproject.org/files/ENCFF889OQM/@@download/ENCFF889OQM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF155REN bigBed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF430DVP 11252857 ENCODE Processing Pipeline b291cf27c1ec6c5e6be72b1d4230059a https://www.encodeproject.org/files/ENCFF155REN/@@download/ENCFF155REN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF842TCJ bigBed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF889OQM 11691671 ENCODE Processing Pipeline fe64396fdc95e5f9934bed0c3ab97155 https://www.encodeproject.org/files/ENCFF842TCJ/@@download/ENCFF842TCJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF204EYH bigBed narrowPeak conservative idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF409MXQ 1571879 ENCODE Processing Pipeline ac48b33e56e147f3df1d1d0ba3d8396a https://www.encodeproject.org/files/ENCFF204EYH/@@download/ENCFF204EYH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF694SEI bigBed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF483SPH 8231615 ENCODE Processing Pipeline d32cad0275e0685d41d7ad95150bca3d https://www.encodeproject.org/files/ENCFF694SEI/@@download/ENCFF694SEI.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF881HZW bigBed narrowPeak optimal idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF942TCG 1607140 ENCODE Processing Pipeline 686f8407db416638d16dec747def3fd1 https://www.encodeproject.org/files/ENCFF881HZW/@@download/ENCFF881HZW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth ENCFF409MXQ bed narrowPeak conservative idr thresholded peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF430DVP, ENCFF483SPH, ENCFF889OQM 883361 ENCODE Processing Pipeline 8f0c57486d0463a460d39ffbe63d7dc8 https://www.encodeproject.org/files/ENCFF409MXQ/@@download/ENCFF409MXQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth ENCFF768KKE bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF479YGR, ENCFF719RCX, ENCFF754DME 5341806 ENCODE Processing Pipeline d74ba6964064a6af20aa766c161699f4 https://www.encodeproject.org/files/ENCFF768KKE/@@download/ENCFF768KKE.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF190QDZ fastq reads ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 1 76 single-ended 5026977973 Bradley Bernstein, Broad 596a17d9b84b44c8e775338c9405a8b1 https://www.encodeproject.org/files/ENCFF190QDZ/@@download/ENCFF190QDZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF206YPV/, /files/ENCFF835QIF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF892UWM fastq reads ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 1 76 single-ended 1840858453 Bradley Bernstein, Broad 1181d8fd510f84843779bd2ff3e33fea https://www.encodeproject.org/files/ENCFF892UWM/@@download/ENCFF892UWM.fastq.gz Illumina HiSeq 2500 /files/ENCFF082OUX/, /files/ENCFF158HCZ/, /files/ENCFF533XEQ/, /files/ENCFF679GQT/, /files/ENCFF682DEF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, inconsistent control run_type NTR biosample, experiment not submitted to GEO ENCFF201EHN bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 76 ENCFF643CGH, ENCFF892UWM 1804072911 ENCODE Processing Pipeline 1d6eab24fb95040d8af1d60f81b27223 https://www.encodeproject.org/files/ENCFF201EHN/@@download/ENCFF201EHN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF027XHQ bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 76 ENCFF190QDZ, ENCFF643CGH 3107537607 ENCODE Processing Pipeline 0ffb2feb2a6108497bde34485ed56404 https://www.encodeproject.org/files/ENCFF027XHQ/@@download/ENCFF027XHQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF769BRY bam unfiltered alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF643CGH, ENCFF892UWM 2158821618 ENCODE Processing Pipeline 9209b27c8bab5f1d2d29da51f00db395 https://www.encodeproject.org/files/ENCFF769BRY/@@download/ENCFF769BRY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF347JHB bam unfiltered alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF190QDZ, ENCFF643CGH 5123335472 ENCODE Processing Pipeline 6998f2c59340fd1374b3795c75f0c8ca https://www.encodeproject.org/files/ENCFF347JHB/@@download/ENCFF347JHB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF087OLS bam unfiltered alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 76 ENCFF807MUK, ENCFF892UWM 2154772654 ENCODE Processing Pipeline 416fa0245c91be83a4f5082902ecc1fa https://www.encodeproject.org/files/ENCFF087OLS/@@download/ENCFF087OLS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF362ZVE bam unfiltered alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 76 ENCFF190QDZ, ENCFF807MUK 5116084395 ENCODE Processing Pipeline 2fe7878eff9ae35622bb9bf5694a1810 https://www.encodeproject.org/files/ENCFF362ZVE/@@download/ENCFF362ZVE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF513QSD bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 76 ENCFF807MUK, ENCFF892UWM 1802999774 ENCODE Processing Pipeline 5d95e1cbe2124ad26ce64b076a1477c8 https://www.encodeproject.org/files/ENCFF513QSD/@@download/ENCFF513QSD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF725YPX bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 76 ENCFF190QDZ, ENCFF807MUK 3105739134 ENCODE Processing Pipeline 50497daaabe7a01cf99088d27d639ad8 https://www.encodeproject.org/files/ENCFF725YPX/@@download/ENCFF725YPX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF452CSZ bigWig signal p-value ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF387KXA, ENCFF513QSD, ENCFF762JSN 1532827005 ENCODE Processing Pipeline 6928fead59c3217398fba4a83e4ea42d https://www.encodeproject.org/files/ENCFF452CSZ/@@download/ENCFF452CSZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF710ERL bigWig signal p-value ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF027XHQ, ENCFF175BOB, ENCFF615RXB 1959907789 ENCODE Processing Pipeline 5bde976923bc0bf236cb71252497e6e1 https://www.encodeproject.org/files/ENCFF710ERL/@@download/ENCFF710ERL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF493POF bigWig signal p-value ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF387KXA, ENCFF725YPX, ENCFF762JSN 1831070154 ENCODE Processing Pipeline 968bd4145f26889a5be64e345b743702 https://www.encodeproject.org/files/ENCFF493POF/@@download/ENCFF493POF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF404GHQ bigWig signal p-value ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF175BOB, ENCFF201EHN, ENCFF615RXB 1669429215 ENCODE Processing Pipeline 8387fe34a2f8eb7e907ccb1b77d657d6 https://www.encodeproject.org/files/ENCFF404GHQ/@@download/ENCFF404GHQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF814KVY bigWig fold change over control ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF387KXA, ENCFF513QSD, ENCFF762JSN 1615402705 ENCODE Processing Pipeline 86e1c1600293db1e13c28c9726461ef3 https://www.encodeproject.org/files/ENCFF814KVY/@@download/ENCFF814KVY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF481IBL bigWig fold change over control ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF175BOB, ENCFF201EHN, ENCFF615RXB 1594899647 ENCODE Processing Pipeline eff9ffb958807ac1997662f906411601 https://www.encodeproject.org/files/ENCFF481IBL/@@download/ENCFF481IBL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF735NUN bigWig fold change over control ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF387KXA, ENCFF513QSD, ENCFF725YPX, ENCFF762JSN 2300064009 ENCODE Processing Pipeline 040d5ae41fcd2dc6bbee86062e97e39c https://www.encodeproject.org/files/ENCFF735NUN/@@download/ENCFF735NUN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF829UMO bigWig fold change over control ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF027XHQ, ENCFF175BOB, ENCFF615RXB 1982587503 ENCODE Processing Pipeline 60f1563d9f4be8d29941ad5bcea7a2da https://www.encodeproject.org/files/ENCFF829UMO/@@download/ENCFF829UMO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF898WWB bigWig fold change over control ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF027XHQ, ENCFF175BOB, ENCFF201EHN, ENCFF615RXB 2314066644 ENCODE Processing Pipeline 2beb29302e2d541c941d73c6ab2e44c9 https://www.encodeproject.org/files/ENCFF898WWB/@@download/ENCFF898WWB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF944PAP bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF027XHQ, ENCFF175BOB, ENCFF201EHN, ENCFF615RXB 7319338 ENCODE Processing Pipeline f52f958dbbe6e081ff8b9eac08741bfd https://www.encodeproject.org/files/ENCFF944PAP/@@download/ENCFF944PAP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF253ZHN bigWig signal p-value ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF027XHQ, ENCFF175BOB, ENCFF201EHN, ENCFF615RXB 1976793593 ENCODE Processing Pipeline bf0d0fc20e3e875ae9486aa6aff2d9b4 https://www.encodeproject.org/files/ENCFF253ZHN/@@download/ENCFF253ZHN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF047NOY bigWig signal p-value ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF387KXA, ENCFF513QSD, ENCFF725YPX, ENCFF762JSN 2176430076 ENCODE Processing Pipeline 0bf7fefed9de3347ae7dd6f690bbbbf5 https://www.encodeproject.org/files/ENCFF047NOY/@@download/ENCFF047NOY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF704YWY bigWig fold change over control ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF387KXA, ENCFF725YPX, ENCFF762JSN 1950378476 ENCODE Processing Pipeline 836c88d5e0c609f8c09ec5fb3f3441a6 https://www.encodeproject.org/files/ENCFF704YWY/@@download/ENCFF704YWY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF408CYR bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF175BOB, ENCFF201EHN, ENCFF615RXB 7196145 ENCODE Processing Pipeline d33fb5162aa1b90f20ed7013623ac62a https://www.encodeproject.org/files/ENCFF408CYR/@@download/ENCFF408CYR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF066ZBS bigBed narrowPeak conservative idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF575KEH 906196 ENCODE Processing Pipeline 1a624f28154b53978a7478e1caa4423b https://www.encodeproject.org/files/ENCFF066ZBS/@@download/ENCFF066ZBS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF716RPP bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF027XHQ, ENCFF175BOB, ENCFF615RXB 7297643 ENCODE Processing Pipeline 876030f5b5c2fa014b5800a8085dce52 https://www.encodeproject.org/files/ENCFF716RPP/@@download/ENCFF716RPP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF575KEH bed narrowPeak conservative idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF408CYR, ENCFF419RSJ, ENCFF716RPP, ENCFF944PAP 432528 ENCODE Processing Pipeline 1f3b7fa648af24f79b17456ce00521db https://www.encodeproject.org/files/ENCFF575KEH/@@download/ENCFF575KEH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF006UUP bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF387KXA, ENCFF725YPX, ENCFF762JSN 7277881 ENCODE Processing Pipeline 3f58fb8da032c56fc98e1777324a5056 https://www.encodeproject.org/files/ENCFF006UUP/@@download/ENCFF006UUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF483PBA bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF387KXA, ENCFF513QSD, ENCFF762JSN 7216453 ENCODE Processing Pipeline 783ba9e8905d5f1811ca6c753333774e https://www.encodeproject.org/files/ENCFF483PBA/@@download/ENCFF483PBA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF004IGR bigBed narrowPeak optimal idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF295HQJ 949490 ENCODE Processing Pipeline bfc10d373f4e7438a502673001a76689 https://www.encodeproject.org/files/ENCFF004IGR/@@download/ENCFF004IGR.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF295HQJ bed narrowPeak optimal idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF408CYR, ENCFF419RSJ, ENCFF716RPP, ENCFF944PAP 448564 ENCODE Processing Pipeline 1ff31c95003b5f48d8cd57fde6878c53 https://www.encodeproject.org/files/ENCFF295HQJ/@@download/ENCFF295HQJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF024LWI bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF387KXA, ENCFF513QSD, ENCFF725YPX, ENCFF762JSN 7295410 ENCODE Processing Pipeline 8d8e81308512d716a0939ce2fe15030e https://www.encodeproject.org/files/ENCFF024LWI/@@download/ENCFF024LWI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF350FBL bigBed narrowPeak conservative idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF766VMU 898122 ENCODE Processing Pipeline d654fe5fb63b1e915a5aee8ec157ec83 https://www.encodeproject.org/files/ENCFF350FBL/@@download/ENCFF350FBL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF700UCB bigBed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF716RPP 12443527 ENCODE Processing Pipeline 761ee8fd00ad355b25b273cc1d614e2b https://www.encodeproject.org/files/ENCFF700UCB/@@download/ENCFF700UCB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF127RJN bigBed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF944PAP 14794018 ENCODE Processing Pipeline 7ff128644d98e133e873dd3728f1159d https://www.encodeproject.org/files/ENCFF127RJN/@@download/ENCFF127RJN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF221AAI bigBed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF024LWI 14786487 ENCODE Processing Pipeline bd8fbc636dd0402bdf49b6bf511333ad https://www.encodeproject.org/files/ENCFF221AAI/@@download/ENCFF221AAI.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF766VMU bed narrowPeak conservative idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF001TDO, ENCFF006UUP, ENCFF024LWI, ENCFF483PBA 426735 ENCODE Processing Pipeline e9a1b81475fbe9e36acbdaf1c1ce3ce4 https://www.encodeproject.org/files/ENCFF766VMU/@@download/ENCFF766VMU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF204VUX bigBed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF006UUP 12427364 ENCODE Processing Pipeline f07ceeb7d7890db91c597c29a33dda16 https://www.encodeproject.org/files/ENCFF204VUX/@@download/ENCFF204VUX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF151NKX bigBed narrowPeak optimal idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF140MVM 943038 ENCODE Processing Pipeline 1eb6b35291e3cdca295a927cede474b8 https://www.encodeproject.org/files/ENCFF151NKX/@@download/ENCFF151NKX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF528OFC bigBed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF408CYR 12534143 ENCODE Processing Pipeline 10571a540a8478f6a0b2aa35aa5d15b5 https://www.encodeproject.org/files/ENCFF528OFC/@@download/ENCFF528OFC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF140MVM bed narrowPeak optimal idr thresholded peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1, 2 ENCFF001TDO, ENCFF006UUP, ENCFF024LWI, ENCFF483PBA 443965 ENCODE Processing Pipeline 32b5d01223cb50a1a20a210ec3c20256 https://www.encodeproject.org/files/ENCFF140MVM/@@download/ENCFF140MVM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF627JKK bigBed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF483PBA 12589444 ENCODE Processing Pipeline 37d5c5f7071dff1749071d5627ad0d97 https://www.encodeproject.org/files/ENCFF627JKK/@@download/ENCFF627JKK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF002AUR fastq reads ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 1 36 single-ended 901596201 Bradley Bernstein, Broad 0d1361ea76b33ff5a1e336c031d728b7 https://www.encodeproject.org/files/ENCFF002AUR/@@download/ENCFF002AUR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BBQ/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF752EVM fastq reads ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 1 36 single-ended 1591816938 Bradley Bernstein, Broad cb17aeb4a3edb8a0d829aa0b0612dacc https://www.encodeproject.org/files/ENCFF752EVM/@@download/ENCFF752EVM.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBC/, /files/ENCFF536ZKX/, /files/ENCFF788ZCC/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF263HKF fastq reads ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 1 76 single-ended 574309274 Bradley Bernstein, Broad 8261a4acd57de6b2e6e64366cb3fd174 https://www.encodeproject.org/files/ENCFF263HKF/@@download/ENCFF263HKF.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBQ/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF320OAN fastq reads ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 1 76 single-ended 571799897 Bradley Bernstein, Broad 1f4ba513c1534f80e9b4cd4278a6264a https://www.encodeproject.org/files/ENCFF320OAN/@@download/ENCFF320OAN.fastq.gz Illumina HiSeq 2500 /files/ENCFF002BBQ/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF319DWE bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 36 ENCFF643CGH, ENCFF752EVM 944157959 ENCODE Processing Pipeline 2273d16b55f1a6923973940bd14abe81 https://www.encodeproject.org/files/ENCFF319DWE/@@download/ENCFF319DWE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF628ZEN bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 36 ENCFF002AUR, ENCFF263HKF, ENCFF320OAN, ENCFF643CGH 1129781542 ENCODE Processing Pipeline 90130158c0c618fc3222ee514e05b6c1 https://www.encodeproject.org/files/ENCFF628ZEN/@@download/ENCFF628ZEN.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF100QHA bam unfiltered alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 36 ENCFF752EVM, ENCFF807MUK 1980540597 ENCODE Processing Pipeline dcb2179a893cc403bfcd45b90b4c1b90 https://www.encodeproject.org/files/ENCFF100QHA/@@download/ENCFF100QHA.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF206ISZ bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 36 ENCFF002AUR, ENCFF263HKF, ENCFF320OAN, ENCFF807MUK 1130259670 ENCODE Processing Pipeline 5fa5b348caca47c295577615a10ebfc3 https://www.encodeproject.org/files/ENCFF206ISZ/@@download/ENCFF206ISZ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF958HIG bam unfiltered alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 36 ENCFF002AUR, ENCFF263HKF, ENCFF320OAN, ENCFF643CGH 1891014940 ENCODE Processing Pipeline d4e263a5d33263568b22ef7aff663ed4 https://www.encodeproject.org/files/ENCFF958HIG/@@download/ENCFF958HIG.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF211KWP bam unfiltered alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 36 ENCFF643CGH, ENCFF752EVM 1992443420 ENCODE Processing Pipeline 2346e8345983d2a647f3bd436fdd7312 https://www.encodeproject.org/files/ENCFF211KWP/@@download/ENCFF211KWP.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF563BNU bam unfiltered alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 36 ENCFF002AUR, ENCFF263HKF, ENCFF320OAN, ENCFF807MUK 1879902308 ENCODE Processing Pipeline 575d3135cccb2b2f2c15018b9fb6fa30 https://www.encodeproject.org/files/ENCFF563BNU/@@download/ENCFF563BNU.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF852USD bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 36 ENCFF752EVM, ENCFF807MUK 944553528 ENCODE Processing Pipeline 0b1adf27cd74b72a6743426c6565c225 https://www.encodeproject.org/files/ENCFF852USD/@@download/ENCFF852USD.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF510CDU bigWig signal p-value ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF012EJM, ENCFF474SYV, ENCFF628ZEN 782281118 ENCODE Processing Pipeline 1cbd063eef798f207d0746e48003bde2 https://www.encodeproject.org/files/ENCFF510CDU/@@download/ENCFF510CDU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF856QTU bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF012EJM, ENCFF474SYV, ENCFF628ZEN 6428791 ENCODE Processing Pipeline 60969251bea3d2152af21e093e757adc https://www.encodeproject.org/files/ENCFF856QTU/@@download/ENCFF856QTU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF585YBD bigWig signal p-value ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF012EJM, ENCFF319DWE, ENCFF474SYV 803088299 ENCODE Processing Pipeline 16a7a02eb737fdac0c3713b0bbb85303 https://www.encodeproject.org/files/ENCFF585YBD/@@download/ENCFF585YBD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF677UYW bigWig signal p-value ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF012EJM, ENCFF319DWE, ENCFF474SYV, ENCFF628ZEN 1122790152 ENCODE Processing Pipeline 3efe69c9e26b02d60d9b8b665524c75d https://www.encodeproject.org/files/ENCFF677UYW/@@download/ENCFF677UYW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF261SZT bigWig fold change over control ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF012EJM, ENCFF474SYV, ENCFF628ZEN 761057740 ENCODE Processing Pipeline 7335d9f9eb82feb21c4f1053634d350c https://www.encodeproject.org/files/ENCFF261SZT/@@download/ENCFF261SZT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF512AWY bigWig fold change over control ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF012EJM, ENCFF319DWE, ENCFF474SYV 735546912 ENCODE Processing Pipeline a6a4f5bee68111aa31cda5d257b7be9c https://www.encodeproject.org/files/ENCFF512AWY/@@download/ENCFF512AWY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF910GAU bigWig fold change over control ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF012EJM, ENCFF319DWE, ENCFF474SYV, ENCFF628ZEN 1110362071 ENCODE Processing Pipeline 2c49f5157319143d8bbbd7f640c334d3 https://www.encodeproject.org/files/ENCFF910GAU/@@download/ENCFF910GAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF550HFI bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF012EJM, ENCFF319DWE, ENCFF474SYV 5571073 ENCODE Processing Pipeline de2066668998825a138380fc51ba3985 https://www.encodeproject.org/files/ENCFF550HFI/@@download/ENCFF550HFI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF347GUP bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF012EJM, ENCFF319DWE, ENCFF474SYV, ENCFF628ZEN 6649608 ENCODE Processing Pipeline 8b97e2fc3456e99e6a153abeca8c4774 https://www.encodeproject.org/files/ENCFF347GUP/@@download/ENCFF347GUP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF840WTR bigBed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF856QTU 13691464 ENCODE Processing Pipeline 25a2db9afc3ec0e93cacdc9950d7d8f7 https://www.encodeproject.org/files/ENCFF840WTR/@@download/ENCFF840WTR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF914OUJ bigBed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF550HFI 11318728 ENCODE Processing Pipeline 890f4d2b7afc3d5fa65262890fb808dd https://www.encodeproject.org/files/ENCFF914OUJ/@@download/ENCFF914OUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF988VWY bigBed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF347GUP 13869341 ENCODE Processing Pipeline a274d1e2ce03ae4f6b2e7eb6d8839f2b https://www.encodeproject.org/files/ENCFF988VWY/@@download/ENCFF988VWY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF898YBS bed narrowPeak conservative idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF347GUP, ENCFF419RSJ, ENCFF550HFI, ENCFF856QTU 717025 ENCODE Processing Pipeline 7e9bb9bcaab823ec5e95db02774ed057 https://www.encodeproject.org/files/ENCFF898YBS/@@download/ENCFF898YBS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF488WQQ bigBed narrowPeak conservative idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF898YBS 1236148 ENCODE Processing Pipeline 3a0c053acc56a0f9560751f44db365cf https://www.encodeproject.org/files/ENCFF488WQQ/@@download/ENCFF488WQQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF713PIC bed narrowPeak optimal idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF347GUP, ENCFF419RSJ, ENCFF550HFI, ENCFF856QTU 900934 ENCODE Processing Pipeline 01ef091e678e9994d641dee20782a449 https://www.encodeproject.org/files/ENCFF713PIC/@@download/ENCFF713PIC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF886YQX bigBed narrowPeak optimal idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF713PIC 1467729 ENCODE Processing Pipeline a2bdbe277e2f3ab9a3b2777a33d2ee28 https://www.encodeproject.org/files/ENCFF886YQX/@@download/ENCFF886YQX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF682NLC bigWig fold change over control ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 1128415508 ENCODE Processing Pipeline 96a8630d1cfa97b0d2b342cb34ee86db https://www.encodeproject.org/files/ENCFF682NLC/@@download/ENCFF682NLC.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF648QAB bigBed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF210LCR 11416198 ENCODE Processing Pipeline 64e3eb479c1114a805af91b4fb64c13e https://www.encodeproject.org/files/ENCFF648QAB/@@download/ENCFF648QAB.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF677WBA bigBed narrowPeak optimal idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF247GZH 1462994 ENCODE Processing Pipeline 03f942f5e1213a3d7227c48a52432436 https://www.encodeproject.org/files/ENCFF677WBA/@@download/ENCFF677WBA.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF166ETV bigWig fold change over control ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 733267850 ENCODE Processing Pipeline 26b32721f2ef5523c492b053099561b2 https://www.encodeproject.org/files/ENCFF166ETV/@@download/ENCFF166ETV.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF827ONU bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI 6330332 ENCODE Processing Pipeline 0addb58adbc441e8f0f1cb4d50308db0 https://www.encodeproject.org/files/ENCFF827ONU/@@download/ENCFF827ONU.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF731GBO bed narrowPeak conservative idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF210LCR, ENCFF827ONU, ENCFF990HKP 715971 ENCODE Processing Pipeline 9c6a7f58c9be7d38844ca88a5987e88c https://www.encodeproject.org/files/ENCFF731GBO/@@download/ENCFF731GBO.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF638DBQ bigWig signal p-value ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI 917151567 ENCODE Processing Pipeline b4ec27348206bf08bdc4c38ce27aee40 https://www.encodeproject.org/files/ENCFF638DBQ/@@download/ENCFF638DBQ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF569RUO bigWig signal p-value ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 877513149 ENCODE Processing Pipeline 603a23e37e2943cca06e1214b124ddcf https://www.encodeproject.org/files/ENCFF569RUO/@@download/ENCFF569RUO.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF006SWE bigWig signal p-value ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 1065739154 ENCODE Processing Pipeline 08a88f211a7637972c58ce86e93801b4 https://www.encodeproject.org/files/ENCFF006SWE/@@download/ENCFF006SWE.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF990HKP bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 6656071 ENCODE Processing Pipeline ba44cb5c46c669050c4b6b33d3af3c40 https://www.encodeproject.org/files/ENCFF990HKP/@@download/ENCFF990HKP.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF324XIP bigBed narrowPeak conservative idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF731GBO 1233834 ENCODE Processing Pipeline 7d8253af3f82290eb226973c528253c5 https://www.encodeproject.org/files/ENCFF324XIP/@@download/ENCFF324XIP.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF137FRH bigWig fold change over control ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI 759141363 ENCODE Processing Pipeline b11afb173e2a8e42d435328261064fa1 https://www.encodeproject.org/files/ENCFF137FRH/@@download/ENCFF137FRH.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF210LCR bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 5654839 ENCODE Processing Pipeline cece85227138bed4d2e487c576138f6d https://www.encodeproject.org/files/ENCFF210LCR/@@download/ENCFF210LCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF813QTG bigBed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF827ONU 13562771 ENCODE Processing Pipeline e2f853c38f5bb3c384c41a4cf20db8e0 https://www.encodeproject.org/files/ENCFF813QTG/@@download/ENCFF813QTG.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF383KTS bigBed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF990HKP 13876311 ENCODE Processing Pipeline d544ff2f628f05dca4abfe534e40ea12 https://www.encodeproject.org/files/ENCFF383KTS/@@download/ENCFF383KTS.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF247GZH bed narrowPeak optimal idr thresholded peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF210LCR, ENCFF827ONU, ENCFF990HKP 897307 ENCODE Processing Pipeline 9500ee7049128a297fadb6618bc4d112 https://www.encodeproject.org/files/ENCFF247GZH/@@download/ENCFF247GZH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF838DSG bam unfiltered alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEL, ENCFF807MUK 606149297 ENCODE Processing Pipeline ccff34c150457dc7f4914abe2ea99d85 https://www.encodeproject.org/files/ENCFF838DSG/@@download/ENCFF838DSG.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF946HUY bam unfiltered alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEP, ENCFF807MUK 1078512316 ENCODE Processing Pipeline a3cc11893497ce06a5cafe8ed54c4586 https://www.encodeproject.org/files/ENCFF946HUY/@@download/ENCFF946HUY.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF636TMC bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 804202146 ENCODE Processing Pipeline bff0807e5d07472793642f1cb2f307d1 https://www.encodeproject.org/files/ENCFF636TMC/@@download/ENCFF636TMC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF111BSU bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 724984810 ENCODE Processing Pipeline 27540503bd190b5002f45d38d7a0cf6e https://www.encodeproject.org/files/ENCFF111BSU/@@download/ENCFF111BSU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF716GBZ bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 4513228 ENCODE Processing Pipeline 38f599db4f85e1edafe6c586428f50b8 https://www.encodeproject.org/files/ENCFF716GBZ/@@download/ENCFF716GBZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF554XAI bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 4855004 ENCODE Processing Pipeline 98de65987c0e66bbad86c88c52ff043c https://www.encodeproject.org/files/ENCFF554XAI/@@download/ENCFF554XAI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF826WTJ bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 6109573 ENCODE Processing Pipeline 852cdd025106af4eb8bcf0df3f208109 https://www.encodeproject.org/files/ENCFF826WTJ/@@download/ENCFF826WTJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF388ECN bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF716GBZ 10550587 ENCODE Processing Pipeline 9434f3b86785ac71bb1e26e3e4689355 https://www.encodeproject.org/files/ENCFF388ECN/@@download/ENCFF388ECN.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF127SAG bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF826WTJ 13325398 ENCODE Processing Pipeline 66c0035032560dca2c53c119264eaf9f https://www.encodeproject.org/files/ENCFF127SAG/@@download/ENCFF127SAG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF824CHM bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF554XAI 10846395 ENCODE Processing Pipeline dbfcd7b322f9fa857a6455b0b18f049c https://www.encodeproject.org/files/ENCFF824CHM/@@download/ENCFF824CHM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF594XPS bigBed narrowPeak conservative idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF318KNL 123518 ENCODE Processing Pipeline b665c3796233eb7d70204dc5ad1dc5e3 https://www.encodeproject.org/files/ENCFF594XPS/@@download/ENCFF594XPS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF694QKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF985TSH 162824 ENCODE Processing Pipeline 6babe8f723ed9cccb16cea2d47b50091 https://www.encodeproject.org/files/ENCFF694QKJ/@@download/ENCFF694QKJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF318KNL bed narrowPeak conservative idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF554XAI, ENCFF716GBZ, ENCFF826WTJ 43370 ENCODE Processing Pipeline 157b035e43c352e9bbe632cf1cac3cb2 https://www.encodeproject.org/files/ENCFF318KNL/@@download/ENCFF318KNL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF985TSH bed narrowPeak optimal idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF554XAI, ENCFF716GBZ, ENCFF826WTJ 53139 ENCODE Processing Pipeline 5d034408cc2d73bb6d706caeaaeeb6ae https://www.encodeproject.org/files/ENCFF985TSH/@@download/ENCFF985TSH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF002EEL fastq reads ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 417216273 Michael Snyder, Stanford d25f08abe0f760e9c8f1c9ec47d3d91e SRA:SRR5112118 https://www.encodeproject.org/files/ENCFF002EEL/@@download/ENCFF002EEL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF002EEP fastq reads ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 752441394 Michael Snyder, Stanford 240c117c3159807b60fa46f8e9a312cc SRA:SRR5112117 https://www.encodeproject.org/files/ENCFF002EEP/@@download/ENCFF002EEP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF295KFF bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEP, ENCFF807MUK 719002595 ENCODE Processing Pipeline cee112f369e8035b3c5b052084a40008 https://www.encodeproject.org/files/ENCFF295KFF/@@download/ENCFF295KFF.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF592VTW bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEL, ENCFF807MUK 408815981 ENCODE Processing Pipeline a5054411d3fb3ae2ffb8ff6563cd00ae https://www.encodeproject.org/files/ENCFF592VTW/@@download/ENCFF592VTW.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF361WUX bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 504795331 ENCODE Processing Pipeline 27e7d869041c64ab5f705f95c2781d5c https://www.encodeproject.org/files/ENCFF361WUX/@@download/ENCFF361WUX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF189YRZ bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 631959959 ENCODE Processing Pipeline d099cf024f31c1d4a051a943e4e2d1c6 https://www.encodeproject.org/files/ENCFF189YRZ/@@download/ENCFF189YRZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF380TXL bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 802949091 ENCODE Processing Pipeline e482c13745ae42ac385c5564066b158c https://www.encodeproject.org/files/ENCFF380TXL/@@download/ENCFF380TXL.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF032IYS bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 249838136 ENCODE Processing Pipeline 9619beccb4c6edd2f34f3fbcd5b7d764 https://www.encodeproject.org/files/ENCFF032IYS/@@download/ENCFF032IYS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF991VXV bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 387590850 ENCODE Processing Pipeline b26eec8da8a3713263c697f85399d2b9 https://www.encodeproject.org/files/ENCFF991VXV/@@download/ENCFF991VXV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF063EPQ bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 730658862 ENCODE Processing Pipeline 4784cee554c28bafa165391e31e5c20f https://www.encodeproject.org/files/ENCFF063EPQ/@@download/ENCFF063EPQ.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF916KLD bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 5050350 ENCODE Processing Pipeline d8a3931ec7358fc3503f9890169714fb https://www.encodeproject.org/files/ENCFF916KLD/@@download/ENCFF916KLD.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF103SAB bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF405AOP 10750924 ENCODE Processing Pipeline d8ce81940b09486dcdbfd9751c4c5a54 https://www.encodeproject.org/files/ENCFF103SAB/@@download/ENCFF103SAB.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF405AOP bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 4718152 ENCODE Processing Pipeline 66a344d1223b1829dba0c2f3c5e1cc85 https://www.encodeproject.org/files/ENCFF405AOP/@@download/ENCFF405AOP.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF085MZN bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 6265867 ENCODE Processing Pipeline 04b57985a2d895f62d03391011084640 https://www.encodeproject.org/files/ENCFF085MZN/@@download/ENCFF085MZN.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF364OIT bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF916KLD 10977867 ENCODE Processing Pipeline 316ff9b10a27ee26d69747328b303264 https://www.encodeproject.org/files/ENCFF364OIT/@@download/ENCFF364OIT.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF657SYH bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF085MZN 13337226 ENCODE Processing Pipeline 6ebdc30e17bd4eb6e96d619633746022 https://www.encodeproject.org/files/ENCFF657SYH/@@download/ENCFF657SYH.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF252IYG bam unfiltered alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEL, ENCFF643CGH 608646302 ENCODE Processing Pipeline 92a3e50747bec3aa0e8583047637a6fc https://www.encodeproject.org/files/ENCFF252IYG/@@download/ENCFF252IYG.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF623PVZ bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEL, ENCFF643CGH 408369030 ENCODE Processing Pipeline 90f97d5387748745914c1474a79e5a79 https://www.encodeproject.org/files/ENCFF623PVZ/@@download/ENCFF623PVZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF012STR bam unfiltered alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEP, ENCFF643CGH 1083412119 ENCODE Processing Pipeline 2270dde6e4959855dd1d131bf1fe863f https://www.encodeproject.org/files/ENCFF012STR/@@download/ENCFF012STR.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF405EME bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEP, ENCFF643CGH 718441242 ENCODE Processing Pipeline d02ed64f85f40829fcedc97b5e649267 https://www.encodeproject.org/files/ENCFF405EME/@@download/ENCFF405EME.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF483SCA bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF623PVZ 454665556 ENCODE Processing Pipeline 585a40edf3c777e46b145c8e1c93a504 https://www.encodeproject.org/files/ENCFF483SCA/@@download/ENCFF483SCA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF423RTI bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF405EME, ENCFF577FNG 604171529 ENCODE Processing Pipeline b6e87bf1e57ce6ecc97da6df15354609 https://www.encodeproject.org/files/ENCFF423RTI/@@download/ENCFF423RTI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF214AFM bigWig signal p-value ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF405EME, ENCFF577FNG, ENCFF623PVZ 939914390 ENCODE Processing Pipeline 4214494ddf36cda5e2e9593bc7fad856 https://www.encodeproject.org/files/ENCFF214AFM/@@download/ENCFF214AFM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF913QHU bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF405EME, ENCFF577FNG 391279555 ENCODE Processing Pipeline 4971429041e1b652ef08199e22094c5d https://www.encodeproject.org/files/ENCFF913QHU/@@download/ENCFF913QHU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF610PVG bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF623PVZ 248371049 ENCODE Processing Pipeline 5e3f15cf627c03b1b9a6207857e9b7d7 https://www.encodeproject.org/files/ENCFF610PVG/@@download/ENCFF610PVG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF235NNS bigWig fold change over control ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF405EME, ENCFF577FNG, ENCFF623PVZ 755533458 ENCODE Processing Pipeline 0a537e2058feabb8f87a746d49c8f464 https://www.encodeproject.org/files/ENCFF235NNS/@@download/ENCFF235NNS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF068RSQ bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF640KEE 10799717 ENCODE Processing Pipeline 579619728caff8962e9ecccca819d3f4 https://www.encodeproject.org/files/ENCFF068RSQ/@@download/ENCFF068RSQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF410CCI bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048AYA 13343185 ENCODE Processing Pipeline 3fd5fb77cada8548bbdcbeaf55b4aa25 https://www.encodeproject.org/files/ENCFF410CCI/@@download/ENCFF410CCI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF263ZGK bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF623PVZ 3925957 ENCODE Processing Pipeline dc36f3209359a1374c927d8e3a759431 https://www.encodeproject.org/files/ENCFF263ZGK/@@download/ENCFF263ZGK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF640KEE bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF405EME, ENCFF577FNG 4805387 ENCODE Processing Pipeline 47e0dffe82e992e006d488a2a361640e https://www.encodeproject.org/files/ENCFF640KEE/@@download/ENCFF640KEE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF048AYA bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF405EME, ENCFF577FNG, ENCFF623PVZ 5992781 ENCODE Processing Pipeline 4b4dea4e62cefbb636697aa4cbefad4c https://www.encodeproject.org/files/ENCFF048AYA/@@download/ENCFF048AYA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF855CCX bigBed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF263ZGK 9770095 ENCODE Processing Pipeline 879893397331642b93df78deabd09357 https://www.encodeproject.org/files/ENCFF855CCX/@@download/ENCFF855CCX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF777MYW bed narrowPeak optimal idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048AYA, ENCFF263ZGK, ENCFF419RSJ, ENCFF640KEE 53894 ENCODE Processing Pipeline 003e9a52b0eec20cf37812002d52be38 https://www.encodeproject.org/files/ENCFF777MYW/@@download/ENCFF777MYW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF970OAN bigBed narrowPeak conservative idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF869JTA 124741 ENCODE Processing Pipeline 6cf997f96308ae3c7ba85b32938153e1 https://www.encodeproject.org/files/ENCFF970OAN/@@download/ENCFF970OAN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF869JTA bed narrowPeak conservative idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF048AYA, ENCFF263ZGK, ENCFF419RSJ, ENCFF640KEE 43284 ENCODE Processing Pipeline 81e2776d6b285184b32b8897dab11d2b https://www.encodeproject.org/files/ENCFF869JTA/@@download/ENCFF869JTA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF031GIL bigBed narrowPeak optimal idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF777MYW 140589 ENCODE Processing Pipeline dbfd42ef8f27fb7c8bcaf512c4d1d0a2 https://www.encodeproject.org/files/ENCFF031GIL/@@download/ENCFF031GIL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF708WDH bed narrowPeak conservative idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF085MZN, ENCFF405AOP, ENCFF916KLD 36945 ENCODE Processing Pipeline 8a05d236c3a99789165ed12aa6b2c599 https://www.encodeproject.org/files/ENCFF708WDH/@@download/ENCFF708WDH.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF653VOQ bigBed narrowPeak conservative idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF708WDH 114847 ENCODE Processing Pipeline 048d557dd673150051bcf124d6f2c5c3 https://www.encodeproject.org/files/ENCFF653VOQ/@@download/ENCFF653VOQ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF890YEO bed narrowPeak optimal idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF085MZN, ENCFF405AOP, ENCFF916KLD 46140 ENCODE Processing Pipeline c0e06ca08ca05f128423079002568224 https://www.encodeproject.org/files/ENCFF890YEO/@@download/ENCFF890YEO.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF133QAV bigBed narrowPeak optimal idr thresholded peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF890YEO 128074 ENCODE Processing Pipeline b4160109a98a6cbf3d93e7b1baa12cfe https://www.encodeproject.org/files/ENCFF133QAV/@@download/ENCFF133QAV.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF450IGI bam unfiltered alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 36 ENCFF002EWU, ENCFF807MUK 1381717984 ENCODE Processing Pipeline d541581af992828d02641863691ca12f https://www.encodeproject.org/files/ENCFF450IGI/@@download/ENCFF450IGI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF593UQX bam unfiltered alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 36 ENCFF002EWK, ENCFF807MUK 1145497486 ENCODE Processing Pipeline 7d3ac2a9efa568a9abc63c3d921a2b23 https://www.encodeproject.org/files/ENCFF593UQX/@@download/ENCFF593UQX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EWK fastq reads ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 1 36 single-ended 849445816 Michael Snyder, Stanford ff4af7a3b8eb65603546dcd7cfb1b6c4 SRA:SRR5112216 https://www.encodeproject.org/files/ENCFF002EWK/@@download/ENCFF002EWK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002EWU fastq reads ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 1 36 single-ended 1074387966 Michael Snyder, Stanford 8177a8ff55fba1c36b1ce2133fb4d25f SRA:SRR5112215 https://www.encodeproject.org/files/ENCFF002EWU/@@download/ENCFF002EWU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF833DBR bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 36 ENCFF002EWU, ENCFF807MUK 663405732 ENCODE Processing Pipeline 89b4f9ecac3017fb913b29765e8370ef https://www.encodeproject.org/files/ENCFF833DBR/@@download/ENCFF833DBR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF508MJP bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 36 ENCFF002EWK, ENCFF807MUK 659820289 ENCODE Processing Pipeline db2ca2eeb841c2ec5565a743ec168037 https://www.encodeproject.org/files/ENCFF508MJP/@@download/ENCFF508MJP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF201BSI bigWig signal p-value ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF508MJP, ENCFF879OQC 478461304 ENCODE Processing Pipeline 41a8ac263b179ed5379b63915bba773b https://www.encodeproject.org/files/ENCFF201BSI/@@download/ENCFF201BSI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF557EAW bigWig fold change over control ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF335IPE, ENCFF833DBR 377324711 ENCODE Processing Pipeline 4de0c74a35a10942cb77ba7011b70894 https://www.encodeproject.org/files/ENCFF557EAW/@@download/ENCFF557EAW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF654ZBD bigBed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF975NRI 11378032 ENCODE Processing Pipeline dd1eeec7de7234e4d35caf8d7f2b4b7b https://www.encodeproject.org/files/ENCFF654ZBD/@@download/ENCFF654ZBD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF017KAL bigWig fold change over control ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF508MJP, ENCFF879OQC 391568550 ENCODE Processing Pipeline 841581c0da965dd3d03e2411766221a9 https://www.encodeproject.org/files/ENCFF017KAL/@@download/ENCFF017KAL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF060XZX bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF335IPE, ENCFF833DBR 4381264 ENCODE Processing Pipeline 383e6889efb44997cec370ab5d17c325 https://www.encodeproject.org/files/ENCFF060XZX/@@download/ENCFF060XZX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF822PNV bigBed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF274DVQ 10820118 ENCODE Processing Pipeline c1900607041e0fe601846222aa8dc45f https://www.encodeproject.org/files/ENCFF822PNV/@@download/ENCFF822PNV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF945XNU bigWig signal p-value ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF335IPE, ENCFF833DBR 545967874 ENCODE Processing Pipeline 945495b7b7a0cb80475b721d6d3ca0f7 https://www.encodeproject.org/files/ENCFF945XNU/@@download/ENCFF945XNU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF899DYD bigWig fold change over control ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF335IPE, ENCFF508MJP, ENCFF833DBR, ENCFF879OQC 876928090 ENCODE Processing Pipeline d3e335680389f41842fff8487301a1ec https://www.encodeproject.org/files/ENCFF899DYD/@@download/ENCFF899DYD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF030ITT bigWig signal p-value ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF335IPE, ENCFF508MJP, ENCFF833DBR, ENCFF879OQC 979975194 ENCODE Processing Pipeline a940dfe10860f6b28d9761495dfd4d68 https://www.encodeproject.org/files/ENCFF030ITT/@@download/ENCFF030ITT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF274DVQ bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF508MJP, ENCFF879OQC 4527559 ENCODE Processing Pipeline 989e63de6058c49c3266aaa1f69937d1 https://www.encodeproject.org/files/ENCFF274DVQ/@@download/ENCFF274DVQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF975NRI bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF335IPE, ENCFF508MJP, ENCFF833DBR, ENCFF879OQC 6063898 ENCODE Processing Pipeline c2192e723f27a63840455d5300ad9609 https://www.encodeproject.org/files/ENCFF975NRI/@@download/ENCFF975NRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF538CGA bigBed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF060XZX 10913572 ENCODE Processing Pipeline e1b85e0218528e92b97edc9499a74c67 https://www.encodeproject.org/files/ENCFF538CGA/@@download/ENCFF538CGA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF127SRR bam unfiltered alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 36 ENCFF002EWK, ENCFF643CGH 1149584453 ENCODE Processing Pipeline cabbb4c9ad5e33251589bcd6801e0344 https://www.encodeproject.org/files/ENCFF127SRR/@@download/ENCFF127SRR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF362LTA bam unfiltered alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 36 ENCFF002EWU, ENCFF643CGH 1388102453 ENCODE Processing Pipeline cfc209ab79e6a9667b635558bd0e49ee https://www.encodeproject.org/files/ENCFF362LTA/@@download/ENCFF362LTA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF600TNR bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 36 ENCFF002EWK, ENCFF643CGH 659318280 ENCODE Processing Pipeline c126ef10ab0984c843064efc6ba924db https://www.encodeproject.org/files/ENCFF600TNR/@@download/ENCFF600TNR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF425MJK bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 36 ENCFF002EWU, ENCFF643CGH 662948297 ENCODE Processing Pipeline deccb465d3f76ffa97c134d1644f08c4 https://www.encodeproject.org/files/ENCFF425MJK/@@download/ENCFF425MJK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF869XTK bigWig signal p-value ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF156FED, ENCFF425MJK 446184303 ENCODE Processing Pipeline 456dcfab3eece8c0eaa592c26469f287 https://www.encodeproject.org/files/ENCFF869XTK/@@download/ENCFF869XTK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF922QUH bigWig signal p-value ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF577FNG, ENCFF600TNR 554373773 ENCODE Processing Pipeline 391fb71dd5f889f357311a210db213cb https://www.encodeproject.org/files/ENCFF922QUH/@@download/ENCFF922QUH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF560CZE bigWig signal p-value ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF156FED, ENCFF425MJK, ENCFF577FNG, ENCFF600TNR 911759717 ENCODE Processing Pipeline 4185da4f50ada55f71f68faca5299c56 https://www.encodeproject.org/files/ENCFF560CZE/@@download/ENCFF560CZE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF007APW bigWig fold change over control ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF156FED, ENCFF425MJK 379208307 ENCODE Processing Pipeline b8402557fd94edeb339787a98e0d21c6 https://www.encodeproject.org/files/ENCFF007APW/@@download/ENCFF007APW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF538PPP bigWig fold change over control ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF577FNG, ENCFF600TNR 391428704 ENCODE Processing Pipeline a12ccfc0b37beca656c3a97994404024 https://www.encodeproject.org/files/ENCFF538PPP/@@download/ENCFF538PPP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF491WEL bigWig fold change over control ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF156FED, ENCFF425MJK, ENCFF577FNG, ENCFF600TNR 877287701 ENCODE Processing Pipeline ea140b1ce48b3003256ab6a2130578c3 https://www.encodeproject.org/files/ENCFF491WEL/@@download/ENCFF491WEL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF635SZW bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF156FED, ENCFF425MJK 4074036 ENCODE Processing Pipeline d1fb531001e427b471b156cf928c46ae https://www.encodeproject.org/files/ENCFF635SZW/@@download/ENCFF635SZW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF364FBS bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF577FNG, ENCFF600TNR 4356080 ENCODE Processing Pipeline 8a81b1d7b8e2a5f57cbf403bdfb99da4 https://www.encodeproject.org/files/ENCFF364FBS/@@download/ENCFF364FBS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF567TSK bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF156FED, ENCFF425MJK, ENCFF577FNG, ENCFF600TNR 5779468 ENCODE Processing Pipeline 472a63529bff009c252c9bbf582eddff https://www.encodeproject.org/files/ENCFF567TSK/@@download/ENCFF567TSK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF121UAT bigBed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF635SZW 10524562 ENCODE Processing Pipeline d7514e4737d7dd06647dd94e67c2d854 https://www.encodeproject.org/files/ENCFF121UAT/@@download/ENCFF121UAT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF231ZKB bigBed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF567TSK 11359635 ENCODE Processing Pipeline 4405ef587db4b2a931ce3bdf328673d4 https://www.encodeproject.org/files/ENCFF231ZKB/@@download/ENCFF231ZKB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF693NZV bigBed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF364FBS 10610113 ENCODE Processing Pipeline fecd66f6dc0d685587d7c9c30315fb3a https://www.encodeproject.org/files/ENCFF693NZV/@@download/ENCFF693NZV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749WKK bed narrowPeak conservative idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF364FBS, ENCFF419RSJ, ENCFF567TSK, ENCFF635SZW 32491 ENCODE Processing Pipeline 375dc0adbb26d52151bd1e9eba3e2061 https://www.encodeproject.org/files/ENCFF749WKK/@@download/ENCFF749WKK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF955MUG bigBed narrowPeak optimal idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF556FYF 126402 ENCODE Processing Pipeline 85e5c72e69e3ce42faed7c56fc36a437 https://www.encodeproject.org/files/ENCFF955MUG/@@download/ENCFF955MUG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF481SXQ bigBed narrowPeak conservative idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF749WKK 114837 ENCODE Processing Pipeline 5b89ddfbe03ae6b549435e80fc5c806f https://www.encodeproject.org/files/ENCFF481SXQ/@@download/ENCFF481SXQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF556FYF bed narrowPeak optimal idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF364FBS, ENCFF419RSJ, ENCFF567TSK, ENCFF635SZW 39688 ENCODE Processing Pipeline 06fd850832b427a97078af5d005d43e5 https://www.encodeproject.org/files/ENCFF556FYF/@@download/ENCFF556FYF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF205MMX bed narrowPeak conservative idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF060XZX, ENCFF274DVQ, ENCFF975NRI 28797 ENCODE Processing Pipeline b4c3930727f5f86632e6ce7ae12c7156 https://www.encodeproject.org/files/ENCFF205MMX/@@download/ENCFF205MMX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF368WHG bigBed narrowPeak optimal idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF312RFN 97259 ENCODE Processing Pipeline ecdd4f055a207c9c8ff202a8e00b539e https://www.encodeproject.org/files/ENCFF368WHG/@@download/ENCFF368WHG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF394FGG bigBed narrowPeak conservative idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF205MMX 89372 ENCODE Processing Pipeline 17e554c536c3a59ad093d3638fbbe90d https://www.encodeproject.org/files/ENCFF394FGG/@@download/ENCFF394FGG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF312RFN bed narrowPeak optimal idr thresholded peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF060XZX, ENCFF274DVQ, ENCFF975NRI 34454 ENCODE Processing Pipeline 0d2abc09baae3bbab2319c87770d5ba6 https://www.encodeproject.org/files/ENCFF312RFN/@@download/ENCFF312RFN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF590PTX fastq reads ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF398BFN 3816210278 Michael Snyder, Stanford efb2e23694e7705e7872c0d6c663edbc SRA:SRR5111306 https://www.encodeproject.org/files/ENCFF590PTX/@@download/ENCFF590PTX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF398BFN fastq reads ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF590PTX 3759234275 Michael Snyder, Stanford 67933e68e95e9d4c6338881049d1b839 SRA:SRR5111306 https://www.encodeproject.org/files/ENCFF398BFN/@@download/ENCFF398BFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF277XRY fastq reads ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF931OID 3825762828 Michael Snyder, Stanford d53d10e65fc0462cefa7f3a9888f4f18 SRA:SRR5111305 https://www.encodeproject.org/files/ENCFF277XRY/@@download/ENCFF277XRY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF931OID fastq reads ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF277XRY 3874291300 Michael Snyder, Stanford a9d6dbfa8cb978cb5aab6f5e4d3a827f SRA:SRR5111305 https://www.encodeproject.org/files/ENCFF931OID/@@download/ENCFF931OID.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF917ZRS bam unfiltered alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 100 ENCFF398BFN, ENCFF590PTX, ENCFF807MUK 7555161466 ENCODE Processing Pipeline f1e404a42e1a6f9ceff47d9259962b39 https://www.encodeproject.org/files/ENCFF917ZRS/@@download/ENCFF917ZRS.bam hg19 released borderline replicate concordance ENCFF502EOF bam unfiltered alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 100 ENCFF277XRY, ENCFF807MUK, ENCFF931OID 7715472453 ENCODE Processing Pipeline 44dbd7e3e6abc8c94a4039a8e08ce3e3 https://www.encodeproject.org/files/ENCFF502EOF/@@download/ENCFF502EOF.bam hg19 released borderline replicate concordance ENCFF204XOT bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 100 ENCFF277XRY, ENCFF807MUK, ENCFF931OID 6134521386 ENCODE Processing Pipeline 0fb8e7f4697dae2b1ba826cc2a82f1e1 https://www.encodeproject.org/files/ENCFF204XOT/@@download/ENCFF204XOT.bam hg19 released borderline replicate concordance ENCFF477KIN bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 100 ENCFF398BFN, ENCFF590PTX, ENCFF807MUK 5879060198 ENCODE Processing Pipeline 1b007f9a796e3624e28fcea8ab230ffd https://www.encodeproject.org/files/ENCFF477KIN/@@download/ENCFF477KIN.bam hg19 released borderline replicate concordance ENCFF295SNS bam unfiltered alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 100 ENCFF277XRY, ENCFF643CGH, ENCFF931OID 7730577755 ENCODE Processing Pipeline ca4aac5c21748cb399ba21359f359124 https://www.encodeproject.org/files/ENCFF295SNS/@@download/ENCFF295SNS.bam GRCh38 released borderline replicate concordance ENCFF460EJC bam unfiltered alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 100 ENCFF398BFN, ENCFF590PTX, ENCFF643CGH 7568945520 ENCODE Processing Pipeline f5f254bee3cda441c87cbb49802b4772 https://www.encodeproject.org/files/ENCFF460EJC/@@download/ENCFF460EJC.bam GRCh38 released borderline replicate concordance ENCFF176VRR bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 100 ENCFF398BFN, ENCFF590PTX, ENCFF643CGH 5887075918 ENCODE Processing Pipeline c35af73b9f262db5ae292f1ddbe9f669 https://www.encodeproject.org/files/ENCFF176VRR/@@download/ENCFF176VRR.bam GRCh38 released borderline replicate concordance ENCFF413GYE bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 100 ENCFF277XRY, ENCFF643CGH, ENCFF931OID 6143656430 ENCODE Processing Pipeline cb78f7bc722f9a1afa8f26173f74ca04 https://www.encodeproject.org/files/ENCFF413GYE/@@download/ENCFF413GYE.bam GRCh38 released borderline replicate concordance ENCFF815CWS bigWig signal p-value ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF176VRR, ENCFF291AFY 1301888129 ENCODE Processing Pipeline bf541948d691e7dcfaca7a3d85c1607f https://www.encodeproject.org/files/ENCFF815CWS/@@download/ENCFF815CWS.bigWig GRCh38 released borderline replicate concordance ENCFF239CTM bigWig fold change over control ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF291AFY, ENCFF413GYE, ENCFF426RDP 1643875724 ENCODE Processing Pipeline 14e51167db6023048623d053de0e2b12 https://www.encodeproject.org/files/ENCFF239CTM/@@download/ENCFF239CTM.bigWig GRCh38 released borderline replicate concordance ENCFF576KGA bigWig signal p-value ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF291AFY, ENCFF413GYE, ENCFF426RDP 1511082065 ENCODE Processing Pipeline aa5418e5ba7b3ac5b8a72baaf5b36592 https://www.encodeproject.org/files/ENCFF576KGA/@@download/ENCFF576KGA.bigWig GRCh38 released borderline replicate concordance ENCFF803ZAO bigWig signal p-value ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF176VRR, ENCFF291AFY, ENCFF413GYE, ENCFF426RDP 2036284999 ENCODE Processing Pipeline 327d71fbecba40d99df006843959ae88 https://www.encodeproject.org/files/ENCFF803ZAO/@@download/ENCFF803ZAO.bigWig GRCh38 released borderline replicate concordance ENCFF649AXX bigWig fold change over control ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF176VRR, ENCFF291AFY 1275640108 ENCODE Processing Pipeline 2be14fa7f0d866bbc9ed780284138790 https://www.encodeproject.org/files/ENCFF649AXX/@@download/ENCFF649AXX.bigWig GRCh38 released borderline replicate concordance ENCFF468GVQ bigWig fold change over control ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF176VRR, ENCFF291AFY, ENCFF413GYE, ENCFF426RDP 2234522691 ENCODE Processing Pipeline ca0888de1d48318a55c59ab2b66f163d https://www.encodeproject.org/files/ENCFF468GVQ/@@download/ENCFF468GVQ.bigWig GRCh38 released borderline replicate concordance ENCFF622JPT bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF291AFY, ENCFF413GYE, ENCFF426RDP 6429597 ENCODE Processing Pipeline 3b85e8cae6047c962552c22fc5862b1b https://www.encodeproject.org/files/ENCFF622JPT/@@download/ENCFF622JPT.bed.gz GRCh38 released borderline replicate concordance ENCFF670GZD bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF176VRR, ENCFF291AFY 5994244 ENCODE Processing Pipeline 673151ff2beffd894d4e3eba41a1eb13 https://www.encodeproject.org/files/ENCFF670GZD/@@download/ENCFF670GZD.bed.gz GRCh38 released borderline replicate concordance ENCFF608WWQ bigBed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF622JPT 11275877 ENCODE Processing Pipeline 2bf0914c97c19a0ca9c4d07487fc120c https://www.encodeproject.org/files/ENCFF608WWQ/@@download/ENCFF608WWQ.bigBed GRCh38 released borderline replicate concordance ENCFF413UCZ bigBed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF670GZD 11175220 ENCODE Processing Pipeline 46f346c4218411f9f17c90e770f3467c https://www.encodeproject.org/files/ENCFF413UCZ/@@download/ENCFF413UCZ.bigBed GRCh38 released borderline replicate concordance ENCFF968ZUU bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF176VRR, ENCFF291AFY, ENCFF413GYE, ENCFF426RDP 7025492 ENCODE Processing Pipeline 93097628a0d261da19583fd837d69c04 https://www.encodeproject.org/files/ENCFF968ZUU/@@download/ENCFF968ZUU.bed.gz GRCh38 released borderline replicate concordance ENCFF531LRF bed narrowPeak conservative idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF622JPT, ENCFF670GZD, ENCFF968ZUU 14080 ENCODE Processing Pipeline 8121a4933ac986c198d5a63ec394c8f1 https://www.encodeproject.org/files/ENCFF531LRF/@@download/ENCFF531LRF.bed.gz GRCh38 released borderline replicate concordance ENCFF363PUC bigBed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF968ZUU 11050318 ENCODE Processing Pipeline 61b8f147d5662301f8724073cb2951a2 https://www.encodeproject.org/files/ENCFF363PUC/@@download/ENCFF363PUC.bigBed GRCh38 released borderline replicate concordance ENCFF624SNN bigBed narrowPeak conservative idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF531LRF 94149 ENCODE Processing Pipeline 00cabac4be13cebdb206ef9f8c900b50 https://www.encodeproject.org/files/ENCFF624SNN/@@download/ENCFF624SNN.bigBed GRCh38 released borderline replicate concordance ENCFF618NVV bed narrowPeak optimal idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF622JPT, ENCFF670GZD, ENCFF968ZUU 33140 ENCODE Processing Pipeline 6dce05a70b3ef0508d16453234646159 https://www.encodeproject.org/files/ENCFF618NVV/@@download/ENCFF618NVV.bed.gz GRCh38 released borderline replicate concordance ENCFF003QSQ bigBed narrowPeak optimal idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF618NVV 134110 ENCODE Processing Pipeline cd0bbe158fc5bda51a098c41cb3007e0 https://www.encodeproject.org/files/ENCFF003QSQ/@@download/ENCFF003QSQ.bigBed GRCh38 released borderline replicate concordance ENCFF894TMI bigWig signal p-value ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF049MPQ, ENCFF204XOT, ENCFF583FAG 1509790802 ENCODE Processing Pipeline cdc21c4348fcdf26af8b09dc972edd9d https://www.encodeproject.org/files/ENCFF894TMI/@@download/ENCFF894TMI.bigWig hg19 released borderline replicate concordance ENCFF213RWT bigWig signal p-value ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF477KIN 1108801242 ENCODE Processing Pipeline d6a7f9cdbf04b980c4151eddd7cd7b8c https://www.encodeproject.org/files/ENCFF213RWT/@@download/ENCFF213RWT.bigWig hg19 released borderline replicate concordance ENCFF092MYH bigWig signal p-value ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF204XOT, ENCFF477KIN, ENCFF583FAG 2083774270 ENCODE Processing Pipeline 3cfdfd70858f0332b3ed97b458f8d9a8 https://www.encodeproject.org/files/ENCFF092MYH/@@download/ENCFF092MYH.bigWig hg19 released borderline replicate concordance ENCFF487RPF bigWig fold change over control ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF049MPQ, ENCFF204XOT, ENCFF583FAG 1642074567 ENCODE Processing Pipeline fa034377141341112090a47963bb8c62 https://www.encodeproject.org/files/ENCFF487RPF/@@download/ENCFF487RPF.bigWig hg19 released borderline replicate concordance ENCFF547HTW bigWig fold change over control ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF477KIN 1290737267 ENCODE Processing Pipeline f91e37762edcb6cf060354cff613a9fc https://www.encodeproject.org/files/ENCFF547HTW/@@download/ENCFF547HTW.bigWig hg19 released borderline replicate concordance ENCFF749YOZ bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF477KIN 5989415 ENCODE Processing Pipeline facb26d15d256bd2d8e262ea0ea238e3 https://www.encodeproject.org/files/ENCFF749YOZ/@@download/ENCFF749YOZ.bed.gz hg19 released borderline replicate concordance ENCFF566GXM bigBed narrowPeak conservative idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF414TRJ 87454 ENCODE Processing Pipeline b96ea3b91532afb694fdf8d347c26d64 https://www.encodeproject.org/files/ENCFF566GXM/@@download/ENCFF566GXM.bigBed hg19 released borderline replicate concordance ENCFF724IHC bigWig fold change over control ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF204XOT, ENCFF477KIN, ENCFF583FAG 2194863509 ENCODE Processing Pipeline 32048b9b155d561ad2d1a216c268ddf5 https://www.encodeproject.org/files/ENCFF724IHC/@@download/ENCFF724IHC.bigWig hg19 released borderline replicate concordance ENCFF500TQK bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF204XOT, ENCFF477KIN, ENCFF583FAG 7015066 ENCODE Processing Pipeline b2e7fb0a8cad47221d21bee2aaf717c1 https://www.encodeproject.org/files/ENCFF500TQK/@@download/ENCFF500TQK.bed.gz hg19 released borderline replicate concordance ENCFF341YYK bigBed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF041CMD 11249359 ENCODE Processing Pipeline 0db49c7fb4d58092ce94692eddeeeb5c https://www.encodeproject.org/files/ENCFF341YYK/@@download/ENCFF341YYK.bigBed hg19 released borderline replicate concordance ENCFF221KKS bigBed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF500TQK 11030343 ENCODE Processing Pipeline df33329013512f76451081f9b0ca94e6 https://www.encodeproject.org/files/ENCFF221KKS/@@download/ENCFF221KKS.bigBed hg19 released borderline replicate concordance ENCFF041CMD bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF049MPQ, ENCFF204XOT, ENCFF583FAG 6417161 ENCODE Processing Pipeline 2388e8251181efb72ad8fb0612e20314 https://www.encodeproject.org/files/ENCFF041CMD/@@download/ENCFF041CMD.bed.gz hg19 released borderline replicate concordance ENCFF414TRJ bed narrowPeak conservative idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF041CMD, ENCFF500TQK, ENCFF749YOZ 11759 ENCODE Processing Pipeline 3e3a4953556c3a76f612759419b82094 https://www.encodeproject.org/files/ENCFF414TRJ/@@download/ENCFF414TRJ.bed.gz hg19 released borderline replicate concordance ENCFF227UFE bigBed narrowPeak optimal idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF884RAO 108098 ENCODE Processing Pipeline b4fa65d5a77e83a09d76492fbfecb02f https://www.encodeproject.org/files/ENCFF227UFE/@@download/ENCFF227UFE.bigBed hg19 released borderline replicate concordance ENCFF805JXD bigBed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF749YOZ 11156736 ENCODE Processing Pipeline b7f0efddc0deb1bab05c79b5adc1f345 https://www.encodeproject.org/files/ENCFF805JXD/@@download/ENCFF805JXD.bigBed hg19 released borderline replicate concordance ENCFF884RAO bed narrowPeak optimal idr thresholded peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF041CMD, ENCFF500TQK, ENCFF749YOZ 28997 ENCODE Processing Pipeline e9107d75716f1b238516c9e39715ad08 https://www.encodeproject.org/files/ENCFF884RAO/@@download/ENCFF884RAO.bed.gz hg19 released borderline replicate concordance ENCFF070SVK fastq reads ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF917ZPE 2745424885 Michael Snyder, Stanford e2bdb821f228f3471c7af70ce3665769 SRA:SRR5112051 https://www.encodeproject.org/files/ENCFF070SVK/@@download/ENCFF070SVK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF416FTW fastq reads ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF608PZD 1756711806 Michael Snyder, Stanford 22e45ee09aadbefec99aa4b9ba11071d SRA:SRR5112052 https://www.encodeproject.org/files/ENCFF416FTW/@@download/ENCFF416FTW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF608PZD fastq reads ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF416FTW 1752570677 Michael Snyder, Stanford d15e3b14826f99d0e57a589dcfb81695 SRA:SRR5112052 https://www.encodeproject.org/files/ENCFF608PZD/@@download/ENCFF608PZD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF917ZPE fastq reads ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF070SVK 2747332363 Michael Snyder, Stanford 620ad17b59fc16b134a0e59f34897433 SRA:SRR5112051 https://www.encodeproject.org/files/ENCFF917ZPE/@@download/ENCFF917ZPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF355SND bam unfiltered alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF416FTW, ENCFF608PZD, ENCFF643CGH 3989566100 ENCODE Processing Pipeline e6c60f8bb55b2a2957ed35b96411ea67 https://www.encodeproject.org/files/ENCFF355SND/@@download/ENCFF355SND.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF941BWG bam unfiltered alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF416FTW, ENCFF608PZD, ENCFF807MUK 3984001365 ENCODE Processing Pipeline 878a3241f16d8ccb553db0ede6e454a5 https://www.encodeproject.org/files/ENCFF941BWG/@@download/ENCFF941BWG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF204BAV bam unfiltered alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF070SVK, ENCFF643CGH, ENCFF917ZPE 6096332252 ENCODE Processing Pipeline f57b50796673a5ac01ac3f35c74eb368 https://www.encodeproject.org/files/ENCFF204BAV/@@download/ENCFF204BAV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF361NOB bam unfiltered alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF070SVK, ENCFF807MUK, ENCFF917ZPE 6088283524 ENCODE Processing Pipeline 5f07ecef95871c8bcedfcab17deb2fd3 https://www.encodeproject.org/files/ENCFF361NOB/@@download/ENCFF361NOB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF316LIP bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF416FTW, ENCFF608PZD, ENCFF643CGH 3519694094 ENCODE Processing Pipeline f7cd2038d34054bd35e6627a021bec98 https://www.encodeproject.org/files/ENCFF316LIP/@@download/ENCFF316LIP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF938VGO bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF416FTW, ENCFF608PZD, ENCFF807MUK 3517400022 ENCODE Processing Pipeline 24a0b3c07458850c7c0502e943985eaf https://www.encodeproject.org/files/ENCFF938VGO/@@download/ENCFF938VGO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF658DQE bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF070SVK, ENCFF643CGH, ENCFF917ZPE 5302915706 ENCODE Processing Pipeline b68a158509be936429435ba84078fe81 https://www.encodeproject.org/files/ENCFF658DQE/@@download/ENCFF658DQE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF607AVR bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF070SVK, ENCFF807MUK, ENCFF917ZPE 5301865862 ENCODE Processing Pipeline 9b20f64ffd7127ec76cee044d52c8625 https://www.encodeproject.org/files/ENCFF607AVR/@@download/ENCFF607AVR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF304RBB bigWig signal p-value ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF607AVR 1299558391 ENCODE Processing Pipeline 1afeed7782bf5a6ce71f22daca9955f2 https://www.encodeproject.org/files/ENCFF304RBB/@@download/ENCFF304RBB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF459YOF bigWig signal p-value ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF938VGO 1331737609 ENCODE Processing Pipeline f60255bf112f825db0d9f7c0b1b844e0 https://www.encodeproject.org/files/ENCFF459YOF/@@download/ENCFF459YOF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF364FCB bigWig signal p-value ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF607AVR, ENCFF938VGO 1897274519 ENCODE Processing Pipeline c1e732dc0982d816becb7c4bd58b7a07 https://www.encodeproject.org/files/ENCFF364FCB/@@download/ENCFF364FCB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF879VNW bigWig fold change over control ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF607AVR 1449163109 ENCODE Processing Pipeline c25f866774f5799e4edfed03d4622bec https://www.encodeproject.org/files/ENCFF879VNW/@@download/ENCFF879VNW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF087HOX bigWig fold change over control ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF938VGO 1272592272 ENCODE Processing Pipeline 72d89d355aaa256c1d7f22b44f69a976 https://www.encodeproject.org/files/ENCFF087HOX/@@download/ENCFF087HOX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF166EHL bigWig fold change over control ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF607AVR, ENCFF938VGO 1938410686 ENCODE Processing Pipeline 04d612a0dcfd0d224798b1da8e538f75 https://www.encodeproject.org/files/ENCFF166EHL/@@download/ENCFF166EHL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF105EGQ bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF607AVR 6653409 ENCODE Processing Pipeline 7f362707efe584afdda8759289944eaf https://www.encodeproject.org/files/ENCFF105EGQ/@@download/ENCFF105EGQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF012MDL bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF938VGO 6477226 ENCODE Processing Pipeline 222604a22520fa35b4c92da08510cae7 https://www.encodeproject.org/files/ENCFF012MDL/@@download/ENCFF012MDL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF790WRT bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF607AVR, ENCFF938VGO 7164820 ENCODE Processing Pipeline 13f9a46d8d6d6d7cc63cb946025e2e10 https://www.encodeproject.org/files/ENCFF790WRT/@@download/ENCFF790WRT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF803MDM bigBed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF105EGQ 11328868 ENCODE Processing Pipeline 0f29eaffa489d842774735a65ffeab8f https://www.encodeproject.org/files/ENCFF803MDM/@@download/ENCFF803MDM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF790CTG bigBed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF012MDL 11393696 ENCODE Processing Pipeline df5facb0d4d6bced0bd5c7097ea5fc73 https://www.encodeproject.org/files/ENCFF790CTG/@@download/ENCFF790CTG.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF848ACL bigBed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF790WRT 11196360 ENCODE Processing Pipeline 29f082799dae6cac50cd0347197955cc https://www.encodeproject.org/files/ENCFF848ACL/@@download/ENCFF848ACL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF620ZAV bed narrowPeak conservative idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF012MDL, ENCFF105EGQ, ENCFF790WRT 117634 ENCODE Processing Pipeline b3d2c51b2b2fb2506b64ab08c02de294 https://www.encodeproject.org/files/ENCFF620ZAV/@@download/ENCFF620ZAV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF867RHN bigBed narrowPeak conservative idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF620ZAV 274653 ENCODE Processing Pipeline 9c5917e8a1483316aa1be3ff55cc73c1 https://www.encodeproject.org/files/ENCFF867RHN/@@download/ENCFF867RHN.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF171TPH bed narrowPeak optimal idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF012MDL, ENCFF105EGQ, ENCFF790WRT 183775 ENCODE Processing Pipeline d7d457fb6d56ebdbbfec19292992083d https://www.encodeproject.org/files/ENCFF171TPH/@@download/ENCFF171TPH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF489HFE bigBed narrowPeak optimal idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF171TPH 376161 ENCODE Processing Pipeline 19744cbf357d1522f499f89b6ba16b96 https://www.encodeproject.org/files/ENCFF489HFE/@@download/ENCFF489HFE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF614YPK bigWig signal p-value ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF658DQE 1453278707 ENCODE Processing Pipeline 1b30522d8ffe00b3a74f2644bcd4ecc1 https://www.encodeproject.org/files/ENCFF614YPK/@@download/ENCFF614YPK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF767VLA bigWig signal p-value ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF316LIP 1113610136 ENCODE Processing Pipeline d696ffbf68bf9e47048bc3daa8d6d2e6 https://www.encodeproject.org/files/ENCFF767VLA/@@download/ENCFF767VLA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF816FUL bigWig signal p-value ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF316LIP, ENCFF658DQE 1731888460 ENCODE Processing Pipeline a9fa399dd5dcbe0682296a1c43d6ba7f https://www.encodeproject.org/files/ENCFF816FUL/@@download/ENCFF816FUL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF753OAI bigWig fold change over control ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF658DQE 1439045906 ENCODE Processing Pipeline 67a9b0e68f4b0a7bf4b9d5de1f454f2a https://www.encodeproject.org/files/ENCFF753OAI/@@download/ENCFF753OAI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF884REX bigWig fold change over control ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF316LIP 1277176629 ENCODE Processing Pipeline fefbf314409d3bf85e7c53780ae7ae80 https://www.encodeproject.org/files/ENCFF884REX/@@download/ENCFF884REX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF285VPD bigWig fold change over control ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF316LIP, ENCFF658DQE 1943858380 ENCODE Processing Pipeline 468dd49d08ac37c65064b6f09c5c5a11 https://www.encodeproject.org/files/ENCFF285VPD/@@download/ENCFF285VPD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF008JUY bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF316LIP 6334497 ENCODE Processing Pipeline e1c23125a0be4faf08f89d34fe1257ef https://www.encodeproject.org/files/ENCFF008JUY/@@download/ENCFF008JUY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF201LOR bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF658DQE 6505674 ENCODE Processing Pipeline 25855c4e28c1f7c9e776028378d11553 https://www.encodeproject.org/files/ENCFF201LOR/@@download/ENCFF201LOR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF021SKX bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF316LIP, ENCFF658DQE 7108775 ENCODE Processing Pipeline 042a2182d8839cee363edf569ab3a0b2 https://www.encodeproject.org/files/ENCFF021SKX/@@download/ENCFF021SKX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF608ZCQ bigBed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF201LOR 11346989 ENCODE Processing Pipeline d1c693d5a630ee0275b32df3fa3b02f3 https://www.encodeproject.org/files/ENCFF608ZCQ/@@download/ENCFF608ZCQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF878ZAB bigBed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF008JUY 11397538 ENCODE Processing Pipeline 7529e29794e2821aecab2bb3be09ba1b https://www.encodeproject.org/files/ENCFF878ZAB/@@download/ENCFF878ZAB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF086YBR bigBed narrowPeak conservative idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF813QKQ 275555 ENCODE Processing Pipeline 7cf3b3873dd14754ec66b8ae31e1ef31 https://www.encodeproject.org/files/ENCFF086YBR/@@download/ENCFF086YBR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF751AGD bigBed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF021SKX 11213089 ENCODE Processing Pipeline dc8041eae7c3bf9ae6ff863e08bc5ce6 https://www.encodeproject.org/files/ENCFF751AGD/@@download/ENCFF751AGD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF813QKQ bed narrowPeak conservative idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF008JUY, ENCFF021SKX, ENCFF201LOR, ENCFF419RSJ 118372 ENCODE Processing Pipeline 3603fa0465ef923110a64f1c6b3cca4f https://www.encodeproject.org/files/ENCFF813QKQ/@@download/ENCFF813QKQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF303YOI bigBed narrowPeak optimal idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF293RRZ 370657 ENCODE Processing Pipeline 38e062aa893756ad484ddb7a9b52d070 https://www.encodeproject.org/files/ENCFF303YOI/@@download/ENCFF303YOI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF293RRZ bed narrowPeak optimal idr thresholded peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF008JUY, ENCFF021SKX, ENCFF201LOR, ENCFF419RSJ 179593 ENCODE Processing Pipeline 3d372e648cf211b70348f5f3d56cfba1 https://www.encodeproject.org/files/ENCFF293RRZ/@@download/ENCFF293RRZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF021NRK fastq reads ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 1 36 paired-ended 1 ENCFF509VNL 785532394 Bradley Bernstein, Broad 8441d288d8cc9a42e574382ec9fbdd2d https://www.encodeproject.org/files/ENCFF021NRK/@@download/ENCFF021NRK.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released low read length, borderline replicate concordance, inconsistent control read length, antibody characterized with exemption, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF509VNL fastq reads ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 1 25 paired-ended 2 ENCFF021NRK 618680653 Bradley Bernstein, Broad ed9fc77354e81f520f5204b4d94ce518 https://www.encodeproject.org/files/ENCFF509VNL/@@download/ENCFF509VNL.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF026SYW fastq reads ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 1 36 paired-ended 1 ENCFF172VTT 950456790 Bradley Bernstein, Broad 53e5f174480a391632443c20b9dcfba4 https://www.encodeproject.org/files/ENCFF026SYW/@@download/ENCFF026SYW.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, borderline replicate concordance, antibody characterized with exemption, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF172VTT fastq reads ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 1 25 paired-ended 2 ENCFF026SYW 749399526 Bradley Bernstein, Broad 114c29836fc93934873eb9282474f362 https://www.encodeproject.org/files/ENCFF172VTT/@@download/ENCFF172VTT.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF840VXP bam unfiltered alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 36 ENCFF021NRK, ENCFF807MUK 1163356088 ENCODE Processing Pipeline d3218031ab0868b6e541d1beca518441 https://www.encodeproject.org/files/ENCFF840VXP/@@download/ENCFF840VXP.bam hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF651RAT bam unfiltered alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 36 ENCFF021NRK, ENCFF643CGH 1171859951 ENCODE Processing Pipeline bbcae256e5d33750eab8c14b5f1be0a4 https://www.encodeproject.org/files/ENCFF651RAT/@@download/ENCFF651RAT.bam GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF907MBX bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 36 ENCFF021NRK, ENCFF807MUK 811402230 ENCODE Processing Pipeline 96ab669dba0c48be5f9373d1474048aa https://www.encodeproject.org/files/ENCFF907MBX/@@download/ENCFF907MBX.bam hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF732KIL bam unfiltered alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 36 ENCFF026SYW, ENCFF643CGH 1424908360 ENCODE Processing Pipeline 02233d3ac2534becb6c85b7669a21631 https://www.encodeproject.org/files/ENCFF732KIL/@@download/ENCFF732KIL.bam GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF227HCM bam unfiltered alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 36 ENCFF026SYW, ENCFF807MUK 1413974015 ENCODE Processing Pipeline 48ab9391f68a7a5f69500f28d228c2c7 https://www.encodeproject.org/files/ENCFF227HCM/@@download/ENCFF227HCM.bam hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF431XOH bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 36 ENCFF026SYW, ENCFF807MUK 987877967 ENCODE Processing Pipeline 78194c9fdae492d664a7dd69975d4970 https://www.encodeproject.org/files/ENCFF431XOH/@@download/ENCFF431XOH.bam hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF871JNI bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 36 ENCFF021NRK, ENCFF643CGH 811004341 ENCODE Processing Pipeline e23797ec4a40ab83501499716f648755 https://www.encodeproject.org/files/ENCFF871JNI/@@download/ENCFF871JNI.bam GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF142EDR bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 36 ENCFF026SYW, ENCFF643CGH 987479793 ENCODE Processing Pipeline c7476cf0de19553da0a910a6e6224299 https://www.encodeproject.org/files/ENCFF142EDR/@@download/ENCFF142EDR.bam GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF055UST bigWig fold change over control ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF907MBX 1017879453 ENCODE Processing Pipeline 547449291b39d661ad37cd9c72324bbb https://www.encodeproject.org/files/ENCFF055UST/@@download/ENCFF055UST.bigWig hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF327PCB bed narrowPeak conservative idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF001TDO, ENCFF134YYB, ENCFF291RVB, ENCFF723MLM 85475 ENCODE Processing Pipeline 84fce93c6ac129a70e69dba28a911fc6 https://www.encodeproject.org/files/ENCFF327PCB/@@download/ENCFF327PCB.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF842SLL bigWig signal p-value ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL 1171640546 ENCODE Processing Pipeline 5ed3a3c7662536447933ff5d4dd0127c https://www.encodeproject.org/files/ENCFF842SLL/@@download/ENCFF842SLL.bigWig hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF741RKC bigWig fold change over control ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL 1193803041 ENCODE Processing Pipeline d632a48f7674de75691d4e8bdfc6924f https://www.encodeproject.org/files/ENCFF741RKC/@@download/ENCFF741RKC.bigWig hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF012VYR bigWig fold change over control ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL, ENCFF907MBX 1537526870 ENCODE Processing Pipeline 5db8dcd230181f167713dc0c0e6612b2 https://www.encodeproject.org/files/ENCFF012VYR/@@download/ENCFF012VYR.bigWig hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF291RVB bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF907MBX 6300866 ENCODE Processing Pipeline 3479240e6facbe7576f5e8b0e80ca315 https://www.encodeproject.org/files/ENCFF291RVB/@@download/ENCFF291RVB.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF060MLS bed narrowPeak optimal idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF001TDO, ENCFF134YYB, ENCFF291RVB, ENCFF723MLM 109181 ENCODE Processing Pipeline 52abfc24697bfc447f22344fa5dba7dd https://www.encodeproject.org/files/ENCFF060MLS/@@download/ENCFF060MLS.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF661RKT bigBed narrowPeak optimal idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF060MLS 293616 ENCODE Processing Pipeline 2bef14651fe717bee899c1a6452e0746 https://www.encodeproject.org/files/ENCFF661RKT/@@download/ENCFF661RKT.bigBed hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF920IOX bigWig signal p-value ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF907MBX 1152884221 ENCODE Processing Pipeline 83f2026051a6d026556819a5534f9ef9 https://www.encodeproject.org/files/ENCFF920IOX/@@download/ENCFF920IOX.bigWig hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF724AHG bigWig signal p-value ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL, ENCFF907MBX 1492162722 ENCODE Processing Pipeline 11899fd6d10418905337cc0c1238c9c1 https://www.encodeproject.org/files/ENCFF724AHG/@@download/ENCFF724AHG.bigWig hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF723MLM bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL, ENCFF907MBX 7119783 ENCODE Processing Pipeline d4ace508ec67fd4eaa4c49d0e644b4a1 https://www.encodeproject.org/files/ENCFF723MLM/@@download/ENCFF723MLM.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF050SJD bigBed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF134YYB 13340101 ENCODE Processing Pipeline 1919771e9d2dc89134b0ca48f28bf361 https://www.encodeproject.org/files/ENCFF050SJD/@@download/ENCFF050SJD.bigBed hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF796PPS bigBed narrowPeak conservative idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF327PCB 211464 ENCODE Processing Pipeline 9f7106bba7a363ab7e765bc5369b9dca https://www.encodeproject.org/files/ENCFF796PPS/@@download/ENCFF796PPS.bigBed hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF134YYB bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL 6755676 ENCODE Processing Pipeline c2af53b3337564bd3de5d32dc5379e4a https://www.encodeproject.org/files/ENCFF134YYB/@@download/ENCFF134YYB.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF448ASP bigBed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF291RVB 13499963 ENCODE Processing Pipeline b9abc9d9449610f9293854d1f6cac5a1 https://www.encodeproject.org/files/ENCFF448ASP/@@download/ENCFF448ASP.bigBed hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF043CUM bigBed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF723MLM 13322799 ENCODE Processing Pipeline 7a805013f102b0632ff15c3bb2fb62d4 https://www.encodeproject.org/files/ENCFF043CUM/@@download/ENCFF043CUM.bigBed hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF521FWE bigWig fold change over control ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF645CCA, ENCFF871JNI, ENCFF943MYJ 1027427691 ENCODE Processing Pipeline c3463b9fd26bd03c19b27f6aa6606bbb https://www.encodeproject.org/files/ENCFF521FWE/@@download/ENCFF521FWE.bigWig GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF312MMF bigWig signal p-value ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF142EDR, ENCFF645CCA, ENCFF871JNI, ENCFF943MYJ 1372763922 ENCODE Processing Pipeline 0452d0e3d3991da637969fd0ca441d5f https://www.encodeproject.org/files/ENCFF312MMF/@@download/ENCFF312MMF.bigWig GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF158FXN bigWig signal p-value ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF645CCA, ENCFF871JNI, ENCFF943MYJ 1247994301 ENCODE Processing Pipeline 0f9ddf8f1e25fa67e62c767c82257c16 https://www.encodeproject.org/files/ENCFF158FXN/@@download/ENCFF158FXN.bigWig GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF462WWR bigWig signal p-value ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF142EDR, ENCFF645CCA, ENCFF943MYJ 1157439805 ENCODE Processing Pipeline 69930054f9e454902ca9b21576a64858 https://www.encodeproject.org/files/ENCFF462WWR/@@download/ENCFF462WWR.bigWig GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF288UDW bigWig fold change over control ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF142EDR, ENCFF645CCA, ENCFF943MYJ 1192778207 ENCODE Processing Pipeline f71d98872a7523c11a16cc966116335c https://www.encodeproject.org/files/ENCFF288UDW/@@download/ENCFF288UDW.bigWig GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF962KZP bigWig fold change over control ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF142EDR, ENCFF645CCA, ENCFF871JNI, ENCFF943MYJ 1521305666 ENCODE Processing Pipeline a088c78b48f9e1ade98f94e234703dc0 https://www.encodeproject.org/files/ENCFF962KZP/@@download/ENCFF962KZP.bigWig GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF915IBR bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF142EDR, ENCFF645CCA, ENCFF943MYJ 6755338 ENCODE Processing Pipeline 49c7bf4e7c29f832c9d5b4d0d354decb https://www.encodeproject.org/files/ENCFF915IBR/@@download/ENCFF915IBR.bed.gz GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF755UQK bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF645CCA, ENCFF871JNI, ENCFF943MYJ 6192382 ENCODE Processing Pipeline 604d434e9cc6c82636c2e3061c8ad02a https://www.encodeproject.org/files/ENCFF755UQK/@@download/ENCFF755UQK.bed.gz GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF244MBI bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF142EDR, ENCFF645CCA, ENCFF871JNI, ENCFF943MYJ 7113966 ENCODE Processing Pipeline 15237542c8eace5a9ff7ed122bc582da https://www.encodeproject.org/files/ENCFF244MBI/@@download/ENCFF244MBI.bed.gz GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF591SVZ bigBed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF755UQK 13538573 ENCODE Processing Pipeline 0837dbe599dd1bbd7374751529852fb8 https://www.encodeproject.org/files/ENCFF591SVZ/@@download/ENCFF591SVZ.bigBed GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF460DLI bigBed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF244MBI 13323873 ENCODE Processing Pipeline 5d6491aea8e130f2be4ff5a42f3d6610 https://www.encodeproject.org/files/ENCFF460DLI/@@download/ENCFF460DLI.bigBed GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF642ZKE bigBed narrowPeak conservative idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF289ECQ 215103 ENCODE Processing Pipeline 38687dbccc202643eae466eea59bacaa https://www.encodeproject.org/files/ENCFF642ZKE/@@download/ENCFF642ZKE.bigBed GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF079RPA bigBed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF915IBR 13345844 ENCODE Processing Pipeline 92b6974d823415545fbb006231bb67a2 https://www.encodeproject.org/files/ENCFF079RPA/@@download/ENCFF079RPA.bigBed GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF289ECQ bed narrowPeak conservative idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF244MBI, ENCFF419RSJ, ENCFF755UQK, ENCFF915IBR 86973 ENCODE Processing Pipeline 1136f8ef11c081c534ad16aa6ad00132 https://www.encodeproject.org/files/ENCFF289ECQ/@@download/ENCFF289ECQ.bed.gz GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF202WIO bed narrowPeak optimal idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF244MBI, ENCFF419RSJ, ENCFF755UQK, ENCFF915IBR 104547 ENCODE Processing Pipeline b8d193bf91de0c05224ebafb42716909 https://www.encodeproject.org/files/ENCFF202WIO/@@download/ENCFF202WIO.bed.gz GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF203WSB bigBed narrowPeak optimal idr thresholded peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1, 2 ENCFF202WIO 240993 ENCODE Processing Pipeline 4ec65cd36dd15638afe94edfb949084c https://www.encodeproject.org/files/ENCFF203WSB/@@download/ENCFF203WSB.bigBed GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF945TKB bam unfiltered alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF364UFN, ENCFF601NHF, ENCFF807MUK 6091552601 ENCODE Processing Pipeline 53ab08f302a0d90c8325b0ff19a7a031 https://www.encodeproject.org/files/ENCFF945TKB/@@download/ENCFF945TKB.bam hg19 released low read depth ENCFF039GKA bam unfiltered alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF541INS, ENCFF806WBE, ENCFF807MUK 3701795875 ENCODE Processing Pipeline ba8100fe1f5ffb800198cab32be568aa https://www.encodeproject.org/files/ENCFF039GKA/@@download/ENCFF039GKA.bam hg19 released low read depth ENCFF364UFN fastq reads ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF601NHF 2818805489 Michael Snyder, Stanford 0ee32c00a4ba3181a88f8f47cf080026 SRA:SRR5112080 https://www.encodeproject.org/files/ENCFF364UFN/@@download/ENCFF364UFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released low read depth ENCFF601NHF fastq reads ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF364UFN 2880238588 Michael Snyder, Stanford 6949fe7f26a66095a9bcd8e775c5f25f SRA:SRR5112080 https://www.encodeproject.org/files/ENCFF601NHF/@@download/ENCFF601NHF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released low read depth ENCFF806WBE fastq reads ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF541INS 1640531709 Michael Snyder, Stanford f5e54ce7d8e7c80a464488a3ab92c964 SRA:SRR5112081 https://www.encodeproject.org/files/ENCFF806WBE/@@download/ENCFF806WBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released low read depth ENCFF541INS fastq reads ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF806WBE 1682880331 Michael Snyder, Stanford 7cb6f0667e2e20a1db0738d4788b6d1d SRA:SRR5112081 https://www.encodeproject.org/files/ENCFF541INS/@@download/ENCFF541INS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released low read depth ENCFF293RDA bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF364UFN, ENCFF601NHF, ENCFF807MUK 3535584200 ENCODE Processing Pipeline 4c8a2f3d2af236e07fc9b3de5ab100ad https://www.encodeproject.org/files/ENCFF293RDA/@@download/ENCFF293RDA.bam hg19 released low read depth ENCFF451IIX bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF541INS, ENCFF806WBE, ENCFF807MUK 3190805931 ENCODE Processing Pipeline 62cb1df561a6d7b6d8041cd85f32f5af https://www.encodeproject.org/files/ENCFF451IIX/@@download/ENCFF451IIX.bam hg19 released low read depth ENCFF163QCO bigWig signal p-value ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF293RDA, ENCFF583FAG 980260617 ENCODE Processing Pipeline add3722a7bbf8e2bdfa5d1485317604c https://www.encodeproject.org/files/ENCFF163QCO/@@download/ENCFF163QCO.bigWig hg19 released low read depth ENCFF444OIY bigWig signal p-value ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF451IIX 939041429 ENCODE Processing Pipeline 1ef316a25d0d7a9bf8054adb12004cac https://www.encodeproject.org/files/ENCFF444OIY/@@download/ENCFF444OIY.bigWig hg19 released low read depth ENCFF314JRB bigWig signal p-value ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF293RDA, ENCFF451IIX, ENCFF583FAG 1537818331 ENCODE Processing Pipeline 174edb2d0d09bece9b2901c16afc1aca https://www.encodeproject.org/files/ENCFF314JRB/@@download/ENCFF314JRB.bigWig hg19 released low read depth ENCFF623FBA bigWig fold change over control ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF293RDA, ENCFF583FAG 984086770 ENCODE Processing Pipeline d36563b166ed6c3246bb0957a6caeb52 https://www.encodeproject.org/files/ENCFF623FBA/@@download/ENCFF623FBA.bigWig hg19 released low read depth ENCFF003FRZ bigWig fold change over control ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF293RDA, ENCFF451IIX, ENCFF583FAG 1830528812 ENCODE Processing Pipeline 7669738ac02e6f4d4be4c0ae16685e0f https://www.encodeproject.org/files/ENCFF003FRZ/@@download/ENCFF003FRZ.bigWig hg19 released low read depth ENCFF982QBO bigWig fold change over control ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF451IIX 950504160 ENCODE Processing Pipeline 9140ddbcded1999a88881447ab1aaf4e https://www.encodeproject.org/files/ENCFF982QBO/@@download/ENCFF982QBO.bigWig hg19 released low read depth ENCFF736XAR bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF049MPQ, ENCFF293RDA, ENCFF451IIX, ENCFF583FAG 7087011 ENCODE Processing Pipeline 9a3a5298cc0533b3ea9c278e4862e943 https://www.encodeproject.org/files/ENCFF736XAR/@@download/ENCFF736XAR.bed.gz hg19 released low read depth ENCFF270NHR bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF451IIX 6304161 ENCODE Processing Pipeline d90dd03b4ef3171f96100588a66cee89 https://www.encodeproject.org/files/ENCFF270NHR/@@download/ENCFF270NHR.bed.gz hg19 released low read depth ENCFF859FNH bigBed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF633FJC 13435887 ENCODE Processing Pipeline 6bff51fdf953e682000da1dfb904f5f7 https://www.encodeproject.org/files/ENCFF859FNH/@@download/ENCFF859FNH.bigBed hg19 released low read depth ENCFF633FJC bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF293RDA, ENCFF583FAG 6343924 ENCODE Processing Pipeline b1116d315978a49710766d803a54c583 https://www.encodeproject.org/files/ENCFF633FJC/@@download/ENCFF633FJC.bed.gz hg19 released low read depth ENCFF296TMW bigBed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF736XAR 13427503 ENCODE Processing Pipeline 559f93dc269dfd25f53ae87dcb150b81 https://www.encodeproject.org/files/ENCFF296TMW/@@download/ENCFF296TMW.bigBed hg19 released low read depth ENCFF570LPB bigBed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF270NHR 11273298 ENCODE Processing Pipeline 64da23caca106eb9a8be5ef6c1c817ec https://www.encodeproject.org/files/ENCFF570LPB/@@download/ENCFF570LPB.bigBed hg19 released low read depth ENCFF430ZSU bam unfiltered alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF541INS, ENCFF643CGH, ENCFF806WBE 3708007088 ENCODE Processing Pipeline c48889299cd10f06406bf801e3d893af https://www.encodeproject.org/files/ENCFF430ZSU/@@download/ENCFF430ZSU.bam GRCh38 released low read depth ENCFF807YXR bam unfiltered alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF364UFN, ENCFF601NHF, ENCFF643CGH 6097215999 ENCODE Processing Pipeline 41ad7e4a6e5cfe163050981fac0ad1d6 https://www.encodeproject.org/files/ENCFF807YXR/@@download/ENCFF807YXR.bam GRCh38 released low read depth ENCFF717YUB bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF541INS, ENCFF643CGH, ENCFF806WBE 3195661093 ENCODE Processing Pipeline ecd8b5f73b91a52166f6dd5a9842c416 https://www.encodeproject.org/files/ENCFF717YUB/@@download/ENCFF717YUB.bam GRCh38 released low read depth ENCFF804LEF bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF364UFN, ENCFF601NHF, ENCFF643CGH 3541160551 ENCODE Processing Pipeline d937956cf0c0dac1df6302308de3fbbb https://www.encodeproject.org/files/ENCFF804LEF/@@download/ENCFF804LEF.bam GRCh38 released low read depth ENCFF098SQD bigWig signal p-value ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF426RDP, ENCFF804LEF 880752010 ENCODE Processing Pipeline 909eca3a051a7ea554659ee075ba93c3 https://www.encodeproject.org/files/ENCFF098SQD/@@download/ENCFF098SQD.bigWig GRCh38 released low read depth ENCFF182QEV bigWig signal p-value ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF717YUB 967647146 ENCODE Processing Pipeline 008da5c44837df44b3d3e2c19b0edefd https://www.encodeproject.org/files/ENCFF182QEV/@@download/ENCFF182QEV.bigWig GRCh38 released low read depth ENCFF082SLY bigWig signal p-value ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF717YUB, ENCFF804LEF 1465816864 ENCODE Processing Pipeline ed9dac71d48bd6b4069d9588685fe470 https://www.encodeproject.org/files/ENCFF082SLY/@@download/ENCFF082SLY.bigWig GRCh38 released low read depth ENCFF325DVK bigWig fold change over control ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF426RDP, ENCFF804LEF 981794735 ENCODE Processing Pipeline 75beea645220fa739fc059bcbd822100 https://www.encodeproject.org/files/ENCFF325DVK/@@download/ENCFF325DVK.bigWig GRCh38 released low read depth ENCFF202YNA bigWig fold change over control ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF717YUB 953145561 ENCODE Processing Pipeline 04e7ef473e436c2d89aecae4084300b6 https://www.encodeproject.org/files/ENCFF202YNA/@@download/ENCFF202YNA.bigWig GRCh38 released low read depth ENCFF948OZS bigWig fold change over control ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF717YUB, ENCFF804LEF 1833242303 ENCODE Processing Pipeline f5866bff1e7501249b6c06a6a77508e6 https://www.encodeproject.org/files/ENCFF948OZS/@@download/ENCFF948OZS.bigWig GRCh38 released low read depth ENCFF489EIP bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF291AFY, ENCFF717YUB 6140763 ENCODE Processing Pipeline 462550779ae28763134c7d1b05301d76 https://www.encodeproject.org/files/ENCFF489EIP/@@download/ENCFF489EIP.bed.gz GRCh38 released low read depth ENCFF713FHY bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF426RDP, ENCFF804LEF 6197188 ENCODE Processing Pipeline 7d0e00c9e2c19e0a7a0f31739af6025f https://www.encodeproject.org/files/ENCFF713FHY/@@download/ENCFF713FHY.bed.gz GRCh38 released low read depth ENCFF642HNJ bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF717YUB, ENCFF804LEF 7035991 ENCODE Processing Pipeline d4bb039b883d1256dc7b7ccf168ece13 https://www.encodeproject.org/files/ENCFF642HNJ/@@download/ENCFF642HNJ.bed.gz GRCh38 released low read depth ENCFF266YDU bigBed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF713FHY 13439090 ENCODE Processing Pipeline cc86f93daef0ccca620b16325b6f6e76 https://www.encodeproject.org/files/ENCFF266YDU/@@download/ENCFF266YDU.bigBed GRCh38 released low read depth ENCFF094CAZ bigBed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF489EIP 11271330 ENCODE Processing Pipeline 657992d0ce34c6edb1b11352f15fa885 https://www.encodeproject.org/files/ENCFF094CAZ/@@download/ENCFF094CAZ.bigBed GRCh38 released low read depth ENCFF773DAS bigBed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF642HNJ 13445473 ENCODE Processing Pipeline 6034c08f46fa7be540cd93bc28fe13e2 https://www.encodeproject.org/files/ENCFF773DAS/@@download/ENCFF773DAS.bigBed GRCh38 released low read depth ENCFF305KJP bigBed narrowPeak conservative idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF506SNO 560575 ENCODE Processing Pipeline 2d4559a2a77d9c847524ad6d088cf050 https://www.encodeproject.org/files/ENCFF305KJP/@@download/ENCFF305KJP.bigBed GRCh38 released low read depth ENCFF506SNO bed narrowPeak conservative idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF419RSJ, ENCFF489EIP, ENCFF642HNJ, ENCFF713FHY 257268 ENCODE Processing Pipeline e3a94e8d1ae1883df91b56a4affd022d https://www.encodeproject.org/files/ENCFF506SNO/@@download/ENCFF506SNO.bed.gz GRCh38 released low read depth ENCFF983NQE bigBed narrowPeak optimal idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF928YTD 592947 ENCODE Processing Pipeline 5095eb97d308621aa0cb12e61d9efa53 https://www.encodeproject.org/files/ENCFF983NQE/@@download/ENCFF983NQE.bigBed GRCh38 released low read depth ENCFF928YTD bed narrowPeak optimal idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF419RSJ, ENCFF489EIP, ENCFF642HNJ, ENCFF713FHY 278344 ENCODE Processing Pipeline 848d7e8e48cb2b090115f78eaffbdbb3 https://www.encodeproject.org/files/ENCFF928YTD/@@download/ENCFF928YTD.bed.gz GRCh38 released low read depth ENCFF132HXT bigBed narrowPeak conservative idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF053NAM 400302 ENCODE Processing Pipeline f63ea2e23b045e1a2ad34a173fb726dd https://www.encodeproject.org/files/ENCFF132HXT/@@download/ENCFF132HXT.bigBed hg19 released low read depth ENCFF015PGM bed narrowPeak optimal idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF270NHR, ENCFF633FJC, ENCFF736XAR 253341 ENCODE Processing Pipeline 1ab6521ee737225dbeff8ca8348955fb https://www.encodeproject.org/files/ENCFF015PGM/@@download/ENCFF015PGM.bed.gz hg19 released low read depth ENCFF053NAM bed narrowPeak conservative idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF270NHR, ENCFF633FJC, ENCFF736XAR 230987 ENCODE Processing Pipeline aab85b7ebb69fbfa45b459f39214f6b0 https://www.encodeproject.org/files/ENCFF053NAM/@@download/ENCFF053NAM.bed.gz hg19 released low read depth ENCFF821DDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 2 ENCFF015PGM 427135 ENCODE Processing Pipeline 601e8172aa56c480e26a761db0f0fd6d https://www.encodeproject.org/files/ENCFF821DDZ/@@download/ENCFF821DDZ.bigBed hg19 released low read depth ENCFF117CBN fastq reads ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF881GTO 873155881 Michael Snyder, Stanford 4dde0f725b7af98f227bd9c6267dead9 SRA:SRR5111194 https://www.encodeproject.org/files/ENCFF117CBN/@@download/ENCFF117CBN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF321KTO fastq reads ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF668FXA 889482108 Michael Snyder, Stanford baf50d18031b90faa8f30b02461cf26a SRA:SRR5111193 https://www.encodeproject.org/files/ENCFF321KTO/@@download/ENCFF321KTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF881GTO fastq reads ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF117CBN 878685964 Michael Snyder, Stanford 156a838e4187b66a9030642abdbd546a SRA:SRR5111194 https://www.encodeproject.org/files/ENCFF881GTO/@@download/ENCFF881GTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF668FXA fastq reads ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF321KTO 890816502 Michael Snyder, Stanford d4c3531e3f98be18893613064aa41eae SRA:SRR5111193 https://www.encodeproject.org/files/ENCFF668FXA/@@download/ENCFF668FXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF800JLF bam unfiltered alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF321KTO, ENCFF643CGH, ENCFF668FXA 2123267268 ENCODE Processing Pipeline 61eecf6d2a5d7665a0632781519c83a4 https://www.encodeproject.org/files/ENCFF800JLF/@@download/ENCFF800JLF.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF817TPT bam unfiltered alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF321KTO, ENCFF668FXA, ENCFF807MUK 2120182269 ENCODE Processing Pipeline 2d21d3f7ca0caf5f606411a30ef7f761 https://www.encodeproject.org/files/ENCFF817TPT/@@download/ENCFF817TPT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF367DCI bam unfiltered alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF117CBN, ENCFF643CGH, ENCFF881GTO 2096139164 ENCODE Processing Pipeline a740e700a85fc5c79daa987a2f770852 https://www.encodeproject.org/files/ENCFF367DCI/@@download/ENCFF367DCI.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF189XFT bam unfiltered alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF117CBN, ENCFF807MUK, ENCFF881GTO 2093143791 ENCODE Processing Pipeline e5bd61567df6f188d39f26c603f7557b https://www.encodeproject.org/files/ENCFF189XFT/@@download/ENCFF189XFT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF140LQJ bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF117CBN, ENCFF807MUK, ENCFF881GTO 1861509883 ENCODE Processing Pipeline 75fc991b0867705b81c53a4d335cef23 https://www.encodeproject.org/files/ENCFF140LQJ/@@download/ENCFF140LQJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF017YQM bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF321KTO, ENCFF643CGH, ENCFF668FXA 1879899733 ENCODE Processing Pipeline c67c59c9d2c7fd98af2eee2cf0f13e99 https://www.encodeproject.org/files/ENCFF017YQM/@@download/ENCFF017YQM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF646WFM bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF117CBN, ENCFF643CGH, ENCFF881GTO 1862584288 ENCODE Processing Pipeline a65d55a3f17ecabaf6c916d08f7e441f https://www.encodeproject.org/files/ENCFF646WFM/@@download/ENCFF646WFM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF591HDZ bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF321KTO, ENCFF668FXA, ENCFF807MUK 1878627508 ENCODE Processing Pipeline aed1266cab03e89f392b62bd193f667b https://www.encodeproject.org/files/ENCFF591HDZ/@@download/ENCFF591HDZ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF345TYD bigWig signal p-value ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF140LQJ 974934698 ENCODE Processing Pipeline d1c4e7798b7fed958148344f87b33a2b https://www.encodeproject.org/files/ENCFF345TYD/@@download/ENCFF345TYD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF574ZGH bigWig signal p-value ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF591HDZ 972403487 ENCODE Processing Pipeline c6fdd64147c65170b43572cef995bc1b https://www.encodeproject.org/files/ENCFF574ZGH/@@download/ENCFF574ZGH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF434IFZ bigWig signal p-value ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF140LQJ, ENCFF591HDZ 1366512525 ENCODE Processing Pipeline 5c4dda7aa012aaa5c409aa7b862056b4 https://www.encodeproject.org/files/ENCFF434IFZ/@@download/ENCFF434IFZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF274PBX bigWig fold change over control ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF140LQJ 870340631 ENCODE Processing Pipeline 2b55a11dcbe21062b6bc6718a118f75d https://www.encodeproject.org/files/ENCFF274PBX/@@download/ENCFF274PBX.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF605QMV bigWig fold change over control ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF591HDZ 842048675 ENCODE Processing Pipeline b86965058c5e76904633b86a2894438d https://www.encodeproject.org/files/ENCFF605QMV/@@download/ENCFF605QMV.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF212LGF bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF140LQJ 5885653 ENCODE Processing Pipeline 0fc8748144db8d5ab0cabda3415ea7a1 https://www.encodeproject.org/files/ENCFF212LGF/@@download/ENCFF212LGF.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF428ISV bigBed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF212LGF 11262653 ENCODE Processing Pipeline 09b684c90c39252cd32b138d1997282c https://www.encodeproject.org/files/ENCFF428ISV/@@download/ENCFF428ISV.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF614GNZ bigWig fold change over control ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF140LQJ, ENCFF591HDZ 1315265160 ENCODE Processing Pipeline e88b0197625d0d4177cbc155edb629bd https://www.encodeproject.org/files/ENCFF614GNZ/@@download/ENCFF614GNZ.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF446PBM bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF591HDZ 5559349 ENCODE Processing Pipeline c76ac68d2be83fbcefd8f5efe66330cc https://www.encodeproject.org/files/ENCFF446PBM/@@download/ENCFF446PBM.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF939WOL bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF140LQJ, ENCFF591HDZ 6632008 ENCODE Processing Pipeline 00b6bf6e2a21b46d2ece187b06d9bea9 https://www.encodeproject.org/files/ENCFF939WOL/@@download/ENCFF939WOL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF097TJQ bigBed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF446PBM 11286211 ENCODE Processing Pipeline d95941f28cad85062319435bb7e1fc4f https://www.encodeproject.org/files/ENCFF097TJQ/@@download/ENCFF097TJQ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF865IPA bigBed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF939WOL 11353019 ENCODE Processing Pipeline f423411caf02a58a413ca3e3df5fcb85 https://www.encodeproject.org/files/ENCFF865IPA/@@download/ENCFF865IPA.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF098YPS bigBed narrowPeak conservative idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF586MBE 157514 ENCODE Processing Pipeline eac361ceab66c8e53fb3fa2bf82657ca https://www.encodeproject.org/files/ENCFF098YPS/@@download/ENCFF098YPS.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF586MBE bed narrowPeak conservative idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF212LGF, ENCFF446PBM, ENCFF939WOL 63415 ENCODE Processing Pipeline 96aaf4da809758c79e018a687db438c5 https://www.encodeproject.org/files/ENCFF586MBE/@@download/ENCFF586MBE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF955KTW bed narrowPeak optimal idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF212LGF, ENCFF446PBM, ENCFF939WOL 89312 ENCODE Processing Pipeline 069fc2636317e8f1ee2f55a11e270093 https://www.encodeproject.org/files/ENCFF955KTW/@@download/ENCFF955KTW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF019WIE bigBed narrowPeak optimal idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF955KTW 194412 ENCODE Processing Pipeline 92d1ea9e438a78017eb18c68e1970ed4 https://www.encodeproject.org/files/ENCFF019WIE/@@download/ENCFF019WIE.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF970ALP bigWig signal p-value ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF646WFM 1115142917 ENCODE Processing Pipeline bc4f2854312d04e1af3612cc50f5a288 https://www.encodeproject.org/files/ENCFF970ALP/@@download/ENCFF970ALP.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF463ZRO bigWig signal p-value ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF017YQM 983681867 ENCODE Processing Pipeline 0c61d533dcdd27477b17fa777cac78b9 https://www.encodeproject.org/files/ENCFF463ZRO/@@download/ENCFF463ZRO.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF544PQX bigWig fold change over control ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF017YQM 840632923 ENCODE Processing Pipeline 620e466ded9c7de155503acc134dcb12 https://www.encodeproject.org/files/ENCFF544PQX/@@download/ENCFF544PQX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF917CYR bigWig signal p-value ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF017YQM, ENCFF646WFM 1311199392 ENCODE Processing Pipeline 97e5abfc9bd874466beab0b0a423ba4c https://www.encodeproject.org/files/ENCFF917CYR/@@download/ENCFF917CYR.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF443YAI bigWig fold change over control ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF646WFM 867138683 ENCODE Processing Pipeline 7be901fa716ae7a7b7a5d3a31292422e https://www.encodeproject.org/files/ENCFF443YAI/@@download/ENCFF443YAI.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF416FPU bigWig fold change over control ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF017YQM, ENCFF646WFM 1326583440 ENCODE Processing Pipeline d960e86b6a9fa6ed74149c3853b70ead https://www.encodeproject.org/files/ENCFF416FPU/@@download/ENCFF416FPU.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF582BLS bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF646WFM 5773339 ENCODE Processing Pipeline 940028d1606a4adf4061b241a6f22208 https://www.encodeproject.org/files/ENCFF582BLS/@@download/ENCFF582BLS.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF543NXL bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF017YQM 5406736 ENCODE Processing Pipeline 58a285d3d4848c9fce6a373c63dfde8a https://www.encodeproject.org/files/ENCFF543NXL/@@download/ENCFF543NXL.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF962UKA bigBed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF582BLS 11261203 ENCODE Processing Pipeline aec75865b63c3addd9d7ac46effda3e1 https://www.encodeproject.org/files/ENCFF962UKA/@@download/ENCFF962UKA.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF975RTD bigBed narrowPeak optimal idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF348HKK 194700 ENCODE Processing Pipeline b4c6a233b201c756bb5bb0aa676f2f62 https://www.encodeproject.org/files/ENCFF975RTD/@@download/ENCFF975RTD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF780TQG bigBed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF543NXL 11271551 ENCODE Processing Pipeline e1f2cab45315ad21da20e63b716c4d71 https://www.encodeproject.org/files/ENCFF780TQG/@@download/ENCFF780TQG.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF489XOD bigBed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF818WFG 11363080 ENCODE Processing Pipeline 34a67281ab6802e93998c7989b70ea33 https://www.encodeproject.org/files/ENCFF489XOD/@@download/ENCFF489XOD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF348HKK bed narrowPeak optimal idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF543NXL, ENCFF582BLS, ENCFF818WFG 88777 ENCODE Processing Pipeline 910f2c529f38d080b733f817a79d48e0 https://www.encodeproject.org/files/ENCFF348HKK/@@download/ENCFF348HKK.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF699OXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF615OFW 157771 ENCODE Processing Pipeline e09141529898c6d8630c98455f89cf76 https://www.encodeproject.org/files/ENCFF699OXZ/@@download/ENCFF699OXZ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF818WFG bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF017YQM, ENCFF646WFM 6524833 ENCODE Processing Pipeline 993228a2e825a97fdde779ece38b4530 https://www.encodeproject.org/files/ENCFF818WFG/@@download/ENCFF818WFG.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF615OFW bed narrowPeak conservative idr thresholded peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF543NXL, ENCFF582BLS, ENCFF818WFG 63062 ENCODE Processing Pipeline 6aa066323b4afe948119992b27384347 https://www.encodeproject.org/files/ENCFF615OFW/@@download/ENCFF615OFW.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF840RGL fastq reads ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 1 40 single-ended 1024170188 Xiang-Dong Fu, UCSD b6f11618f8480215461f3567190667bb SRA:SRR6213494 https://www.encodeproject.org/files/ENCFF840RGL/@@download/ENCFF840RGL.fastq.gz Illumina HiSeq 2000 /files/ENCFF299MMO/ released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF924MON fastq reads ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 1 40 single-ended 912078723 Xiang-Dong Fu, UCSD 72c6565a99df968dae07627fc6428141 SRA:SRR6213495 https://www.encodeproject.org/files/ENCFF924MON/@@download/ENCFF924MON.fastq.gz Illumina HiSeq 2000 /files/ENCFF299MMO/ released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF587OZE fastq reads ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 1 40 single-ended 1169984704 Xiang-Dong Fu, UCSD deb20668ac0239a509fcbae2018799dd SRA:SRR6213496 https://www.encodeproject.org/files/ENCFF587OZE/@@download/ENCFF587OZE.fastq.gz Illumina HiSeq 2000 /files/ENCFF299MMO/ released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF985NRQ fastq reads ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 1 40 single-ended 1295533487 Xiang-Dong Fu, UCSD 85a3f23721d93407a27045658c0adcc4 SRA:SRR6213493 https://www.encodeproject.org/files/ENCFF985NRQ/@@download/ENCFF985NRQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF592CBA/ released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF120ASJ bam unfiltered alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF643CGH, ENCFF985NRQ 1830516144 ENCODE Processing Pipeline 3d8874b211ea86c2fcebe9d54bdc41ae https://www.encodeproject.org/files/ENCFF120ASJ/@@download/ENCFF120ASJ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF696YYU bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF643CGH, ENCFF985NRQ 1117534031 ENCODE Processing Pipeline 934b9266f79e58fa19c7b447450a2b70 https://www.encodeproject.org/files/ENCFF696YYU/@@download/ENCFF696YYU.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF341FNZ bam unfiltered alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF807MUK, ENCFF985NRQ 1825015307 ENCODE Processing Pipeline 75f0e2ea810eac18676b34ff3381b62c https://www.encodeproject.org/files/ENCFF341FNZ/@@download/ENCFF341FNZ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF366BIR bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF807MUK, ENCFF985NRQ 1118005485 ENCODE Processing Pipeline 5380a250c74f1b65399025407b889d25 https://www.encodeproject.org/files/ENCFF366BIR/@@download/ENCFF366BIR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF501UXP bam unfiltered alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF587OZE, ENCFF807MUK, ENCFF840RGL, ENCFF924MON 3448415851 ENCODE Processing Pipeline ab3f8f2dda4b2c840e80276b16aba462 https://www.encodeproject.org/files/ENCFF501UXP/@@download/ENCFF501UXP.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF431QLB bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF587OZE, ENCFF807MUK, ENCFF840RGL, ENCFF924MON 1797912386 ENCODE Processing Pipeline d7b35373ff9bf96041df45825408e907 https://www.encodeproject.org/files/ENCFF431QLB/@@download/ENCFF431QLB.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF833PEG bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF587OZE, ENCFF643CGH, ENCFF840RGL, ENCFF924MON 1797370000 ENCODE Processing Pipeline b65476850660892f2d742c211eef5e2a https://www.encodeproject.org/files/ENCFF833PEG/@@download/ENCFF833PEG.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF469KKQ bam unfiltered alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF587OZE, ENCFF643CGH, ENCFF840RGL, ENCFF924MON 3460597164 ENCODE Processing Pipeline 95b69e70efbc328faa3ee595c56b2347 https://www.encodeproject.org/files/ENCFF469KKQ/@@download/ENCFF469KKQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF880UMI bigWig signal p-value ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF833PEG, ENCFF890CQW 1068704593 ENCODE Processing Pipeline 54c16d73f5595d3f94bec3db7731bd14 https://www.encodeproject.org/files/ENCFF880UMI/@@download/ENCFF880UMI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF083QOX bigWig fold change over control ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF833PEG, ENCFF890CQW 931019920 ENCODE Processing Pipeline 7d47391e9073228deea350ae37c4ff12 https://www.encodeproject.org/files/ENCFF083QOX/@@download/ENCFF083QOX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF982TMD bigWig signal p-value ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF026GVE, ENCFF696YYU 996506290 ENCODE Processing Pipeline a826418d57f60fbce28c11ebe5455fc6 https://www.encodeproject.org/files/ENCFF982TMD/@@download/ENCFF982TMD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF097HAD bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF026GVE, ENCFF696YYU 7095629 ENCODE Processing Pipeline 06ee714555a3c7d257b5e19c936b38e0 https://www.encodeproject.org/files/ENCFF097HAD/@@download/ENCFF097HAD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF895GNL bigBed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF097HAD 11825319 ENCODE Processing Pipeline d16ae3ddf1346000ea22823c04de9481 https://www.encodeproject.org/files/ENCFF895GNL/@@download/ENCFF895GNL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF305WYD bed narrowPeak optimal idr thresholded peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF070XJJ, ENCFF097HAD, ENCFF419RSJ, ENCFF756XIX 627241 ENCODE Processing Pipeline 80ebfa3cbdb496632988fd756a7b8b25 https://www.encodeproject.org/files/ENCFF305WYD/@@download/ENCFF305WYD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF066ITM bigWig signal p-value ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF026GVE, ENCFF696YYU, ENCFF833PEG, ENCFF890CQW 1648072404 ENCODE Processing Pipeline e6562e57c9b1dcdd3f78d30f00e180d6 https://www.encodeproject.org/files/ENCFF066ITM/@@download/ENCFF066ITM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF958IZK bigWig fold change over control ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF026GVE, ENCFF696YYU 635753504 ENCODE Processing Pipeline d6cd9c753913a6392508f014ed0174f5 https://www.encodeproject.org/files/ENCFF958IZK/@@download/ENCFF958IZK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF655TBA bigWig fold change over control ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF026GVE, ENCFF696YYU, ENCFF833PEG, ENCFF890CQW 1402995986 ENCODE Processing Pipeline 6e4d2b7203e6db3fbb59338083b32965 https://www.encodeproject.org/files/ENCFF655TBA/@@download/ENCFF655TBA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF070XJJ bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF833PEG, ENCFF890CQW 6964034 ENCODE Processing Pipeline cfc168380642e8215eee03e8b921782c https://www.encodeproject.org/files/ENCFF070XJJ/@@download/ENCFF070XJJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF921LOP bigBed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF070XJJ 11544544 ENCODE Processing Pipeline 64aa1f8a5c2058a20d9b69cc831519d2 https://www.encodeproject.org/files/ENCFF921LOP/@@download/ENCFF921LOP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF899UXI bigBed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF756XIX 11728682 ENCODE Processing Pipeline 151f9005a7ea3a98786af954027052d3 https://www.encodeproject.org/files/ENCFF899UXI/@@download/ENCFF899UXI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF292RVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF305WYD 1103283 ENCODE Processing Pipeline 71a78966bd45edfb821243ae2462d824 https://www.encodeproject.org/files/ENCFF292RVQ/@@download/ENCFF292RVQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF756XIX bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF026GVE, ENCFF696YYU, ENCFF833PEG, ENCFF890CQW 7085890 ENCODE Processing Pipeline 0e2356e89577e349194c8da48f49e202 https://www.encodeproject.org/files/ENCFF756XIX/@@download/ENCFF756XIX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF806MMQ bigWig signal p-value ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF373TTH, ENCFF431QLB 1064848492 ENCODE Processing Pipeline 3a93cdede40335793e6efc741f4e400a https://www.encodeproject.org/files/ENCFF806MMQ/@@download/ENCFF806MMQ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF777JMV bigWig fold change over control ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF373TTH, ENCFF431QLB 910969146 ENCODE Processing Pipeline ee1e403eb50d58144529d0f74b9e510c https://www.encodeproject.org/files/ENCFF777JMV/@@download/ENCFF777JMV.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF601TYR bigWig signal p-value ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF343LLI, ENCFF366BIR 970138309 ENCODE Processing Pipeline 122d55a4499dd024a3e5330c7bf9b46d https://www.encodeproject.org/files/ENCFF601TYR/@@download/ENCFF601TYR.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF772WXT bigWig signal p-value ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF343LLI, ENCFF366BIR, ENCFF373TTH, ENCFF431QLB 1759737183 ENCODE Processing Pipeline 638c4235434e824e1872604643b0235c https://www.encodeproject.org/files/ENCFF772WXT/@@download/ENCFF772WXT.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF545PRX bigWig fold change over control ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF343LLI, ENCFF366BIR 624920308 ENCODE Processing Pipeline d30aa97ed23017d0d2ac458255a94151 https://www.encodeproject.org/files/ENCFF545PRX/@@download/ENCFF545PRX.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF938EGN bigWig fold change over control ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF343LLI, ENCFF366BIR, ENCFF373TTH, ENCFF431QLB 1380277838 ENCODE Processing Pipeline 1b586043c281c2c84f36e3405ca04d6e https://www.encodeproject.org/files/ENCFF938EGN/@@download/ENCFF938EGN.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF835IHR bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF373TTH, ENCFF431QLB 7064915 ENCODE Processing Pipeline 8dddd5e9548971eb9c7943dc7e39afbc https://www.encodeproject.org/files/ENCFF835IHR/@@download/ENCFF835IHR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF231NZX bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF343LLI, ENCFF366BIR 7059985 ENCODE Processing Pipeline 8dc42d3bec717438edc8e74e56c392bf https://www.encodeproject.org/files/ENCFF231NZX/@@download/ENCFF231NZX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF540AOE bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF343LLI, ENCFF366BIR, ENCFF373TTH, ENCFF431QLB 7172273 ENCODE Processing Pipeline edc93d497c43279eee09c1f39cccc2ee https://www.encodeproject.org/files/ENCFF540AOE/@@download/ENCFF540AOE.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF105SNX bigBed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF835IHR 11662570 ENCODE Processing Pipeline 3f819f29560373e4b8cdf48e44b7a0de https://www.encodeproject.org/files/ENCFF105SNX/@@download/ENCFF105SNX.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF645OJP bigBed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF231NZX 11785629 ENCODE Processing Pipeline 4ede670297442c00e383800ce8a5b734 https://www.encodeproject.org/files/ENCFF645OJP/@@download/ENCFF645OJP.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF688VHI bed narrowPeak optimal idr thresholded peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF001TDO, ENCFF231NZX, ENCFF540AOE, ENCFF835IHR 640728 ENCODE Processing Pipeline fc924e265574d49d0e9bb5225bd229c0 https://www.encodeproject.org/files/ENCFF688VHI/@@download/ENCFF688VHI.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF536MOJ bigBed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF540AOE 11833913 ENCODE Processing Pipeline 35812e4bf276c86f2edc247026877256 https://www.encodeproject.org/files/ENCFF536MOJ/@@download/ENCFF536MOJ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF296QZG bigBed narrowPeak optimal idr thresholded peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF688VHI 1129073 ENCODE Processing Pipeline bcd025bc8935d06457edd7c73de95489 https://www.encodeproject.org/files/ENCFF296QZG/@@download/ENCFF296QZG.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF707MCD fastq reads ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF132YCG 2268465996 Michael Snyder, Stanford 9efc11b7d32fbc12b3b68bec3514a345 SRA:SRR5112283 https://www.encodeproject.org/files/ENCFF707MCD/@@download/ENCFF707MCD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF022TFF fastq reads ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF960UFT 2154678093 Michael Snyder, Stanford 7b9e172545b393c67dff3a466f856196 SRA:SRR5112284 https://www.encodeproject.org/files/ENCFF022TFF/@@download/ENCFF022TFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF960UFT fastq reads ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF022TFF 2182431909 Michael Snyder, Stanford de8945cbd3d1713079b5d7d6c325a197 SRA:SRR5112284 https://www.encodeproject.org/files/ENCFF960UFT/@@download/ENCFF960UFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF132YCG fastq reads ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF707MCD 2297092902 Michael Snyder, Stanford 63794c89d29f541d8a461e6d862c28d2 SRA:SRR5112283 https://www.encodeproject.org/files/ENCFF132YCG/@@download/ENCFF132YCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF850XRA bam unfiltered alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF132YCG, ENCFF707MCD, ENCFF807MUK 5078890726 ENCODE Processing Pipeline 4dcb8afdf1161561a66b49b30b9845d0 https://www.encodeproject.org/files/ENCFF850XRA/@@download/ENCFF850XRA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF882ZLY bam unfiltered alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF132YCG, ENCFF643CGH, ENCFF707MCD 5083000071 ENCODE Processing Pipeline 2323eeec8cf3b4ee3bc2357d3ba2d1db https://www.encodeproject.org/files/ENCFF882ZLY/@@download/ENCFF882ZLY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF286GBE bam unfiltered alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022TFF, ENCFF643CGH, ENCFF960UFT 4859517695 ENCODE Processing Pipeline 791e651a200025abdb3b9052b54ca676 https://www.encodeproject.org/files/ENCFF286GBE/@@download/ENCFF286GBE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF507CBB bam unfiltered alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022TFF, ENCFF807MUK, ENCFF960UFT 4855106559 ENCODE Processing Pipeline 7b33980b264d9479acc1fc1e692fcbf5 https://www.encodeproject.org/files/ENCFF507CBB/@@download/ENCFF507CBB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF363YEP bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022TFF, ENCFF643CGH, ENCFF960UFT 4068748596 ENCODE Processing Pipeline 088a3d6b022ea85237b253d5881b54d2 https://www.encodeproject.org/files/ENCFF363YEP/@@download/ENCFF363YEP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF744DHU bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF132YCG, ENCFF643CGH, ENCFF707MCD 4270601006 ENCODE Processing Pipeline 9aea46ba890a26eb76ad959ab684fa64 https://www.encodeproject.org/files/ENCFF744DHU/@@download/ENCFF744DHU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF998OHX bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF132YCG, ENCFF707MCD, ENCFF807MUK 4267937400 ENCODE Processing Pipeline c35496455863d49a4c94b2b30fed589b https://www.encodeproject.org/files/ENCFF998OHX/@@download/ENCFF998OHX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF391ZJP bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022TFF, ENCFF807MUK, ENCFF960UFT 4065504625 ENCODE Processing Pipeline 514316c90921ecc162883bab5544e306 https://www.encodeproject.org/files/ENCFF391ZJP/@@download/ENCFF391ZJP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF383TJQ bigWig signal p-value ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF391ZJP 1257893500 ENCODE Processing Pipeline dc4183682e6b775a88b9bb77b9707a93 https://www.encodeproject.org/files/ENCFF383TJQ/@@download/ENCFF383TJQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF459OSK bigWig signal p-value ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF998OHX 1435309039 ENCODE Processing Pipeline a89be024ccf598a744dacc7b08fc69ad https://www.encodeproject.org/files/ENCFF459OSK/@@download/ENCFF459OSK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF872DYE bigWig signal p-value ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF391ZJP, ENCFF998OHX 1786801660 ENCODE Processing Pipeline e78a7e9ed4b33b15f83f46cb3af95754 https://www.encodeproject.org/files/ENCFF872DYE/@@download/ENCFF872DYE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF357MOA bigWig fold change over control ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF391ZJP 1277324808 ENCODE Processing Pipeline 3befa6521b0db8e5d2cb885e0a2956bc https://www.encodeproject.org/files/ENCFF357MOA/@@download/ENCFF357MOA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF577LHO bigWig fold change over control ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF998OHX 1304186020 ENCODE Processing Pipeline 163ebfe08d8c82b5accf17ca5c4336ce https://www.encodeproject.org/files/ENCFF577LHO/@@download/ENCFF577LHO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF248LFR bigWig fold change over control ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF391ZJP, ENCFF998OHX 1869208214 ENCODE Processing Pipeline c3197cbf057e89d6126f38facc6d13f8 https://www.encodeproject.org/files/ENCFF248LFR/@@download/ENCFF248LFR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF703KWO bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF391ZJP 6366861 ENCODE Processing Pipeline 83a4819247059579c054f2e5c44ba9dd https://www.encodeproject.org/files/ENCFF703KWO/@@download/ENCFF703KWO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF443VIO bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF998OHX 6388236 ENCODE Processing Pipeline 57ac12aa8c4c3edda1bb6e446ff2c975 https://www.encodeproject.org/files/ENCFF443VIO/@@download/ENCFF443VIO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF061GEN bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF391ZJP, ENCFF998OHX 7049238 ENCODE Processing Pipeline a13a84ecb48b1b7d4e2b6ac5c59db7cc https://www.encodeproject.org/files/ENCFF061GEN/@@download/ENCFF061GEN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF876JOK bigBed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF703KWO 11445751 ENCODE Processing Pipeline 926c21463a9393e9025bdd92c7bbb38d https://www.encodeproject.org/files/ENCFF876JOK/@@download/ENCFF876JOK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF542FWI bigBed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF443VIO 11435854 ENCODE Processing Pipeline a325e508e75368b8f96c1d570e926365 https://www.encodeproject.org/files/ENCFF542FWI/@@download/ENCFF542FWI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF119DZF bigBed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF061GEN 11276768 ENCODE Processing Pipeline 9eb17e860aadd52fd9d3c285501f62eb https://www.encodeproject.org/files/ENCFF119DZF/@@download/ENCFF119DZF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF986AMZ bed narrowPeak conservative idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF061GEN, ENCFF443VIO, ENCFF703KWO 78299 ENCODE Processing Pipeline edf3e224386b969abe530243ceec055f https://www.encodeproject.org/files/ENCFF986AMZ/@@download/ENCFF986AMZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF747BFY bigBed narrowPeak conservative idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF986AMZ 206358 ENCODE Processing Pipeline e2de97334daa5e615228d4365f916f56 https://www.encodeproject.org/files/ENCFF747BFY/@@download/ENCFF747BFY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF589WFG bed narrowPeak optimal idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF061GEN, ENCFF443VIO, ENCFF703KWO 111473 ENCODE Processing Pipeline 7fd85371cabe5e28bd179a02d76f11de https://www.encodeproject.org/files/ENCFF589WFG/@@download/ENCFF589WFG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF271XOI bigBed narrowPeak optimal idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF589WFG 260288 ENCODE Processing Pipeline a5ebf257b1bad082bac8c205c651cd2d https://www.encodeproject.org/files/ENCFF271XOI/@@download/ENCFF271XOI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF912RIN bigWig signal p-value ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF744DHU 1217974589 ENCODE Processing Pipeline e8394f372377af5b88004346c760f04c https://www.encodeproject.org/files/ENCFF912RIN/@@download/ENCFF912RIN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF919QCF bigWig signal p-value ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF363YEP 1315086024 ENCODE Processing Pipeline 44a8ba358223d5dd4184f7ea01bb0352 https://www.encodeproject.org/files/ENCFF919QCF/@@download/ENCFF919QCF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF520VMZ bigWig signal p-value ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF363YEP, ENCFF744DHU 1418302798 ENCODE Processing Pipeline e2a6d98d3f07a55892a7ddc1ae05b8ab https://www.encodeproject.org/files/ENCFF520VMZ/@@download/ENCFF520VMZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF955OBC bigWig fold change over control ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF363YEP 1285602675 ENCODE Processing Pipeline a9544b9ee015c4145e314cb83c7504e2 https://www.encodeproject.org/files/ENCFF955OBC/@@download/ENCFF955OBC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF706DRG bigWig fold change over control ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF744DHU 1330976177 ENCODE Processing Pipeline 876cc42245f4250362787ab33e5bbfa5 https://www.encodeproject.org/files/ENCFF706DRG/@@download/ENCFF706DRG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF528IMH bigWig fold change over control ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF363YEP, ENCFF744DHU 1860135442 ENCODE Processing Pipeline b106bb70b65cfa17d36ab006a356aa91 https://www.encodeproject.org/files/ENCFF528IMH/@@download/ENCFF528IMH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF536VWF bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF363YEP 6229006 ENCODE Processing Pipeline 9ff8fdfe4461bb39710a958976f26c62 https://www.encodeproject.org/files/ENCFF536VWF/@@download/ENCFF536VWF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF718XGQ bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF744DHU 6249431 ENCODE Processing Pipeline da865652f4e6797c1cc3cd6d3601f731 https://www.encodeproject.org/files/ENCFF718XGQ/@@download/ENCFF718XGQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF942ULX bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF363YEP, ENCFF744DHU 6965149 ENCODE Processing Pipeline 6a34cce711ec4c22d78f5a8c8c8e16f7 https://www.encodeproject.org/files/ENCFF942ULX/@@download/ENCFF942ULX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF463VJF bigBed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF718XGQ 11443232 ENCODE Processing Pipeline b3172dc5940359c625df4d9123430454 https://www.encodeproject.org/files/ENCFF463VJF/@@download/ENCFF463VJF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF060ZCU bigBed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF536VWF 11448004 ENCODE Processing Pipeline 33ec09fb147be202aa742689f77bb284 https://www.encodeproject.org/files/ENCFF060ZCU/@@download/ENCFF060ZCU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF569TRQ bigBed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF942ULX 11289379 ENCODE Processing Pipeline ee0d314c2be2d98653e76c54a63dd128 https://www.encodeproject.org/files/ENCFF569TRQ/@@download/ENCFF569TRQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF196DXT bed narrowPeak conservative idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF536VWF, ENCFF718XGQ, ENCFF942ULX 80493 ENCODE Processing Pipeline 043b2ecebd3ed92a9003e18c9044d802 https://www.encodeproject.org/files/ENCFF196DXT/@@download/ENCFF196DXT.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF049QBU bigBed narrowPeak conservative idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF196DXT 211515 ENCODE Processing Pipeline d70137d0f18df2de93ff0bfa9715b870 https://www.encodeproject.org/files/ENCFF049QBU/@@download/ENCFF049QBU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF056ZHR bigBed narrowPeak optimal idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF765JWP 266290 ENCODE Processing Pipeline 9bf6d09796341794c9708b6bcbdeebb0 https://www.encodeproject.org/files/ENCFF056ZHR/@@download/ENCFF056ZHR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF765JWP bed narrowPeak optimal idr thresholded peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF536VWF, ENCFF718XGQ, ENCFF942ULX 114545 ENCODE Processing Pipeline 06caaf392d3a011a4db6e45bfd52b0df https://www.encodeproject.org/files/ENCFF765JWP/@@download/ENCFF765JWP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF871PJG fastq reads ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF490PRK 5139921746 Michael Snyder, Stanford d9dbe680af732c2777c83123e493fd41 SRA:SRR5112206 https://www.encodeproject.org/files/ENCFF871PJG/@@download/ENCFF871PJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released ENCFF490PRK fastq reads ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF871PJG 5208249485 Michael Snyder, Stanford 7ec1b4b1971345ab4e9c2a565448d3c8 SRA:SRR5112206 https://www.encodeproject.org/files/ENCFF490PRK/@@download/ENCFF490PRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released ENCFF571ZGV fastq reads ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF237IMG 4752928074 Michael Snyder, Stanford 26e4b2fb5c5f601b965592843c265264 SRA:SRR5112207 https://www.encodeproject.org/files/ENCFF571ZGV/@@download/ENCFF571ZGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released ENCFF237IMG fastq reads ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF571ZGV 4696913115 Michael Snyder, Stanford 97dfff902fa8e90a39f44b790fe47b44 SRA:SRR5112207 https://www.encodeproject.org/files/ENCFF237IMG/@@download/ENCFF237IMG.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released ENCFF632QJM bam unfiltered alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 100 ENCFF237IMG, ENCFF571ZGV, ENCFF807MUK 9509458265 ENCODE Processing Pipeline bb9e5229915d7132e7868c0137dcac65 https://www.encodeproject.org/files/ENCFF632QJM/@@download/ENCFF632QJM.bam hg19 released ENCFF002XDH bam unfiltered alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 100 ENCFF490PRK, ENCFF807MUK, ENCFF871PJG 10349646863 ENCODE Processing Pipeline 42b6d1a57c315ea5006d225d2264bca6 https://www.encodeproject.org/files/ENCFF002XDH/@@download/ENCFF002XDH.bam hg19 released ENCFF532KUU bam unfiltered alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 100 ENCFF237IMG, ENCFF571ZGV, ENCFF643CGH 9520733380 ENCODE Processing Pipeline 91c27b6eae493a0edbaa7c7ee7095f04 https://www.encodeproject.org/files/ENCFF532KUU/@@download/ENCFF532KUU.bam GRCh38 released ENCFF560YXG bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 100 ENCFF237IMG, ENCFF571ZGV, ENCFF807MUK 7631797913 ENCODE Processing Pipeline 558dc7d851dcbd938462032e426f059f https://www.encodeproject.org/files/ENCFF560YXG/@@download/ENCFF560YXG.bam hg19 released ENCFF181AMB bam unfiltered alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 100 ENCFF490PRK, ENCFF643CGH, ENCFF871PJG 10364061258 ENCODE Processing Pipeline 0463536804fcdc96dfd2a6f2fd45e531 https://www.encodeproject.org/files/ENCFF181AMB/@@download/ENCFF181AMB.bam GRCh38 released ENCFF404RJD bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 100 ENCFF490PRK, ENCFF807MUK, ENCFF871PJG 8107432188 ENCODE Processing Pipeline 0423447a257d94ab0c5c5f49db10f60a https://www.encodeproject.org/files/ENCFF404RJD/@@download/ENCFF404RJD.bam hg19 released ENCFF826JBZ bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 100 ENCFF237IMG, ENCFF571ZGV, ENCFF643CGH 7638320386 ENCODE Processing Pipeline e25691148391c3a724758bc34fc192b5 https://www.encodeproject.org/files/ENCFF826JBZ/@@download/ENCFF826JBZ.bam GRCh38 released ENCFF412ASO bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 100 ENCFF490PRK, ENCFF643CGH, ENCFF871PJG 8116145352 ENCODE Processing Pipeline 583b69c108fdc9660fba8e68ddc03d89 https://www.encodeproject.org/files/ENCFF412ASO/@@download/ENCFF412ASO.bam GRCh38 released ENCFF324MOD bigWig fold change over control ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF826JBZ 1877826967 ENCODE Processing Pipeline df8249cc72df3ead25b6c0843a15fd4a https://www.encodeproject.org/files/ENCFF324MOD/@@download/ENCFF324MOD.bigWig GRCh38 released ENCFF032JET bigWig signal p-value ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF412ASO 1428267794 ENCODE Processing Pipeline a7178c8a05eed18cd3a1993da6eff579 https://www.encodeproject.org/files/ENCFF032JET/@@download/ENCFF032JET.bigWig GRCh38 released ENCFF382JTN bigWig signal p-value ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF412ASO, ENCFF488RJA, ENCFF826JBZ 2320944640 ENCODE Processing Pipeline 3275aed41949bc3f7026f46f410a1c17 https://www.encodeproject.org/files/ENCFF382JTN/@@download/ENCFF382JTN.bigWig GRCh38 released ENCFF741KLI bigWig signal p-value ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF826JBZ 1485047488 ENCODE Processing Pipeline 91a345ab1969ab66db1d66a5dc7c2253 https://www.encodeproject.org/files/ENCFF741KLI/@@download/ENCFF741KLI.bigWig GRCh38 released ENCFF146JJX bigWig fold change over control ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF412ASO 1563426648 ENCODE Processing Pipeline 371e2a9930f07044411abdc172fa9bef https://www.encodeproject.org/files/ENCFF146JJX/@@download/ENCFF146JJX.bigWig GRCh38 released ENCFF618UQG bigWig fold change over control ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF412ASO, ENCFF488RJA, ENCFF826JBZ 2567254853 ENCODE Processing Pipeline 7bd117fde0b8b5fdaed170974d26ab5d https://www.encodeproject.org/files/ENCFF618UQG/@@download/ENCFF618UQG.bigWig GRCh38 released ENCFF327YRJ bigBed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF963ZID 13423324 ENCODE Processing Pipeline 08c0ab1c96f26f43ca195007ed0f0008 https://www.encodeproject.org/files/ENCFF327YRJ/@@download/ENCFF327YRJ.bigBed GRCh38 released ENCFF963ZID bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF412ASO, ENCFF488RJA, ENCFF826JBZ 7261147 ENCODE Processing Pipeline 477df664631265be94f46ec80712b4ac https://www.encodeproject.org/files/ENCFF963ZID/@@download/ENCFF963ZID.bed.gz GRCh38 released ENCFF945ZLZ bigBed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF108SAS 11348162 ENCODE Processing Pipeline d630e5738d71030dece09d100afb056d https://www.encodeproject.org/files/ENCFF945ZLZ/@@download/ENCFF945ZLZ.bigBed GRCh38 released ENCFF687YGC bigBed narrowPeak conservative idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF523SBI 518797 ENCODE Processing Pipeline 772ba3e6dd1db095626172f697d64f94 https://www.encodeproject.org/files/ENCFF687YGC/@@download/ENCFF687YGC.bigBed GRCh38 released ENCFF108SAS bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF412ASO 6906921 ENCODE Processing Pipeline c4b199c5c7b2ccb830ec037b7b753e6b https://www.encodeproject.org/files/ENCFF108SAS/@@download/ENCFF108SAS.bed.gz GRCh38 released ENCFF214VHU bigBed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF488EME 11314965 ENCODE Processing Pipeline 1fbb557b909525c24543e5f047f40d45 https://www.encodeproject.org/files/ENCFF214VHU/@@download/ENCFF214VHU.bigBed GRCh38 released ENCFF488EME bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF826JBZ 6969596 ENCODE Processing Pipeline 413cf994d5e79e4917e2a9386a030457 https://www.encodeproject.org/files/ENCFF488EME/@@download/ENCFF488EME.bed.gz GRCh38 released ENCFF523SBI bed narrowPeak conservative idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF108SAS, ENCFF419RSJ, ENCFF488EME, ENCFF963ZID 263052 ENCODE Processing Pipeline 8afdb1aa5605af203a86bfe9c7f6ed20 https://www.encodeproject.org/files/ENCFF523SBI/@@download/ENCFF523SBI.bed.gz GRCh38 released ENCFF897JLM bigBed narrowPeak optimal idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF817UEX 608005 ENCODE Processing Pipeline a19a7dc25b72b14d55f30eeb5c1fa20d https://www.encodeproject.org/files/ENCFF897JLM/@@download/ENCFF897JLM.bigBed GRCh38 released ENCFF817UEX bed narrowPeak optimal idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF108SAS, ENCFF419RSJ, ENCFF488EME, ENCFF963ZID 326460 ENCODE Processing Pipeline 34b25656d3796676428d196e9a0e140d https://www.encodeproject.org/files/ENCFF817UEX/@@download/ENCFF817UEX.bed.gz GRCh38 released ENCFF512QFT bigWig signal p-value ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF560YXG, ENCFF760DHW 1789135602 ENCODE Processing Pipeline e04abb2efc9e9d405f3a5a0090502e7c https://www.encodeproject.org/files/ENCFF512QFT/@@download/ENCFF512QFT.bigWig hg19 released ENCFF060WSE bigWig signal p-value ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF404RJD, ENCFF760DHW 1400960660 ENCODE Processing Pipeline 973a0bb5b4ac883bed6495c41bac966b https://www.encodeproject.org/files/ENCFF060WSE/@@download/ENCFF060WSE.bigWig hg19 released ENCFF989VQY bigWig signal p-value ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF404RJD, ENCFF560YXG, ENCFF760DHW 2317170141 ENCODE Processing Pipeline dea04688e7a97d467b705f4c6457f913 https://www.encodeproject.org/files/ENCFF989VQY/@@download/ENCFF989VQY.bigWig hg19 released ENCFF349WSG bigWig fold change over control ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF560YXG, ENCFF760DHW 1914545872 ENCODE Processing Pipeline 3efbd90dcded97b9c525ab250ce784d3 https://www.encodeproject.org/files/ENCFF349WSG/@@download/ENCFF349WSG.bigWig hg19 released ENCFF091AHF bigWig fold change over control ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF404RJD, ENCFF760DHW 1526981473 ENCODE Processing Pipeline 927c336b2b639d74a6a74a1f9ca58c26 https://www.encodeproject.org/files/ENCFF091AHF/@@download/ENCFF091AHF.bigWig hg19 released ENCFF718LNR bigBed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF407DGA 11331793 ENCODE Processing Pipeline f01ccd247f9c9e7af93115c2415850b2 https://www.encodeproject.org/files/ENCFF718LNR/@@download/ENCFF718LNR.bigBed hg19 released ENCFF128ERM bigWig fold change over control ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF404RJD, ENCFF560YXG, ENCFF760DHW 2564373426 ENCODE Processing Pipeline 21405a54b7886cbe1db4601179b6fb7e https://www.encodeproject.org/files/ENCFF128ERM/@@download/ENCFF128ERM.bigWig hg19 released ENCFF497PBS bigBed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF930CXT 13418901 ENCODE Processing Pipeline 6ad9dfa12e6b7b593be2b1d248da728e https://www.encodeproject.org/files/ENCFF497PBS/@@download/ENCFF497PBS.bigBed hg19 released ENCFF407DGA bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF404RJD, ENCFF760DHW 6900090 ENCODE Processing Pipeline 9fa798e8e6d31e9ad67651403b3e07ef https://www.encodeproject.org/files/ENCFF407DGA/@@download/ENCFF407DGA.bed.gz hg19 released ENCFF318QLK bed narrowPeak optimal idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF407DGA, ENCFF930CXT, ENCFF943FOK 324419 ENCODE Processing Pipeline a9c5e13520aed738df7f24f3f65c52fe https://www.encodeproject.org/files/ENCFF318QLK/@@download/ENCFF318QLK.bed.gz hg19 released ENCFF943FOK bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF560YXG, ENCFF760DHW 6965873 ENCODE Processing Pipeline 32c9e395a5199e54f2f4e7264ba0cd46 https://www.encodeproject.org/files/ENCFF943FOK/@@download/ENCFF943FOK.bed.gz hg19 released ENCFF930CXT bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF404RJD, ENCFF560YXG, ENCFF760DHW 7254969 ENCODE Processing Pipeline 94d676dda8f82975e09cb36a029578cb https://www.encodeproject.org/files/ENCFF930CXT/@@download/ENCFF930CXT.bed.gz hg19 released ENCFF227YMW bigBed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF943FOK 11302171 ENCODE Processing Pipeline 570bde7b7c639741f6cfa6cdd20547eb https://www.encodeproject.org/files/ENCFF227YMW/@@download/ENCFF227YMW.bigBed hg19 released ENCFF339GCD bigBed narrowPeak conservative idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF019ASX 515495 ENCODE Processing Pipeline 71fca1f34b730ed65afff04393a62c33 https://www.encodeproject.org/files/ENCFF339GCD/@@download/ENCFF339GCD.bigBed hg19 released ENCFF192VEQ bigBed narrowPeak optimal idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF318QLK 603334 ENCODE Processing Pipeline ab15952dcce267df8a416d2bb0c7181c https://www.encodeproject.org/files/ENCFF192VEQ/@@download/ENCFF192VEQ.bigBed hg19 released ENCFF019ASX bed narrowPeak conservative idr thresholded peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF407DGA, ENCFF930CXT, ENCFF943FOK 261464 ENCODE Processing Pipeline 681cb59ca76929ea88fe081d70a0fdde https://www.encodeproject.org/files/ENCFF019ASX/@@download/ENCFF019ASX.bed.gz hg19 released ENCFF163PCX fastq reads ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF083CVO 2394220820 Michael Snyder, Stanford 1c85ba08c275f26744a11be0e68760a1 SRA:SRR6213639 https://www.encodeproject.org/files/ENCFF163PCX/@@download/ENCFF163PCX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF143DZT fastq reads ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF103HSX 1879342793 Michael Snyder, Stanford 91156a6cd5ef1406af2a0efc50dd0f72 SRA:SRR6213640 https://www.encodeproject.org/files/ENCFF143DZT/@@download/ENCFF143DZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF083CVO fastq reads ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF163PCX 2291753141 Michael Snyder, Stanford 9cc074b8b26ca07815d3cc6ee87dfd75 SRA:SRR6213639 https://www.encodeproject.org/files/ENCFF083CVO/@@download/ENCFF083CVO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF103HSX fastq reads ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF143DZT 1790309106 Michael Snyder, Stanford a4dd9ab61092de684a812de5377c0733 SRA:SRR6213640 https://www.encodeproject.org/files/ENCFF103HSX/@@download/ENCFF103HSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF630DOW bam unfiltered alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103HSX, ENCFF143DZT, ENCFF807MUK 3740207906 ENCODE Processing Pipeline 4ccd4aaca90bcbbbbdefa0d80c27198d https://www.encodeproject.org/files/ENCFF630DOW/@@download/ENCFF630DOW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF636PLY bam unfiltered alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103HSX, ENCFF143DZT, ENCFF643CGH 3742336153 ENCODE Processing Pipeline cf3678871b2914cb957ae50451d2c529 https://www.encodeproject.org/files/ENCFF636PLY/@@download/ENCFF636PLY.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF432CZZ bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103HSX, ENCFF143DZT, ENCFF643CGH 2841467915 ENCODE Processing Pipeline 3861335f1e497873ec33b16aeca53fc3 https://www.encodeproject.org/files/ENCFF432CZZ/@@download/ENCFF432CZZ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF602LPS bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103HSX, ENCFF143DZT, ENCFF807MUK 2839500040 ENCODE Processing Pipeline a3f0a3ed60ae3763d0c36bc05094df9c https://www.encodeproject.org/files/ENCFF602LPS/@@download/ENCFF602LPS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF714FNS bam unfiltered alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF083CVO, ENCFF163PCX, ENCFF643CGH 4728515025 ENCODE Processing Pipeline 3945e38b9b26c7481658744835f93bc2 https://www.encodeproject.org/files/ENCFF714FNS/@@download/ENCFF714FNS.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF381GNT bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF083CVO, ENCFF163PCX, ENCFF643CGH 3664494467 ENCODE Processing Pipeline 26181231e4de0093819b26a5d55b9a8c https://www.encodeproject.org/files/ENCFF381GNT/@@download/ENCFF381GNT.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF548EUS bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF083CVO, ENCFF163PCX, ENCFF807MUK 3661761079 ENCODE Processing Pipeline 9d6c7a76e7e09c75c00f9ca4fcd9a853 https://www.encodeproject.org/files/ENCFF548EUS/@@download/ENCFF548EUS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF738VHM bam unfiltered alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF083CVO, ENCFF163PCX, ENCFF807MUK 4725612155 ENCODE Processing Pipeline 5f8c61d86b934cd74baef9730ecd90ef https://www.encodeproject.org/files/ENCFF738VHM/@@download/ENCFF738VHM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF022YJH bigWig signal p-value ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF602LPS 1266496513 ENCODE Processing Pipeline 777cfbfe66ee15e6355e44a699627af4 https://www.encodeproject.org/files/ENCFF022YJH/@@download/ENCFF022YJH.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF544NNW bigWig signal p-value ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF548EUS, ENCFF602LPS 1579649929 ENCODE Processing Pipeline 336a020b8a723bece43b82bbad762cd7 https://www.encodeproject.org/files/ENCFF544NNW/@@download/ENCFF544NNW.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF412FDD bigWig signal p-value ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF548EUS 1245571146 ENCODE Processing Pipeline 0b93dc78dbe3743bc718479744888221 https://www.encodeproject.org/files/ENCFF412FDD/@@download/ENCFF412FDD.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF478VCC bigWig fold change over control ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF548EUS 1224623513 ENCODE Processing Pipeline f19aa4b95deb9b4da4306b293ef531a8 https://www.encodeproject.org/files/ENCFF478VCC/@@download/ENCFF478VCC.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF352WWL bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF548EUS, ENCFF602LPS 6805767 ENCODE Processing Pipeline 6b5374e4cea340faaf4b478de0e56870 https://www.encodeproject.org/files/ENCFF352WWL/@@download/ENCFF352WWL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF142WDI bigBed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF730BUV 11368176 ENCODE Processing Pipeline 7572fd705a8a22d06cf1399a64a8171b https://www.encodeproject.org/files/ENCFF142WDI/@@download/ENCFF142WDI.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF368PUY bigWig fold change over control ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF548EUS, ENCFF602LPS 1698481301 ENCODE Processing Pipeline 36a6f2c526a86f5f6c1b2a68c5810fc5 https://www.encodeproject.org/files/ENCFF368PUY/@@download/ENCFF368PUY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF730BUV bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF548EUS 6162234 ENCODE Processing Pipeline 4d5856ec3827854d423cfda22539cd1e https://www.encodeproject.org/files/ENCFF730BUV/@@download/ENCFF730BUV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF248BEZ bigWig signal p-value ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF381GNT 1307236422 ENCODE Processing Pipeline 0fc3f5a74235804e82db43ac079a6d4a https://www.encodeproject.org/files/ENCFF248BEZ/@@download/ENCFF248BEZ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF558IHL bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF602LPS 5969653 ENCODE Processing Pipeline 0ddc6b72c715c94e47da2e2a409c383f https://www.encodeproject.org/files/ENCFF558IHL/@@download/ENCFF558IHL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF352GPU bigBed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF558IHL 11369190 ENCODE Processing Pipeline 3575c294199ee06f168a6a80fd8eda25 https://www.encodeproject.org/files/ENCFF352GPU/@@download/ENCFF352GPU.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF897YSR bigBed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF352WWL 11208743 ENCODE Processing Pipeline 37c10a8edc565bcfaaaccad06a019b0f https://www.encodeproject.org/files/ENCFF897YSR/@@download/ENCFF897YSR.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF190ZFQ bigWig fold change over control ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF381GNT 1222245167 ENCODE Processing Pipeline a805f4bec787ddd7ab00f1c66daedd95 https://www.encodeproject.org/files/ENCFF190ZFQ/@@download/ENCFF190ZFQ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF137DYC bigWig fold change over control ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF602LPS 1057153589 ENCODE Processing Pipeline d0202d2432b7ea98ed3ca525c292969b https://www.encodeproject.org/files/ENCFF137DYC/@@download/ENCFF137DYC.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF121AUE bigWig signal p-value ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF432CZZ 1184792775 ENCODE Processing Pipeline c2e05cfa08285979635a2722d07f827a https://www.encodeproject.org/files/ENCFF121AUE/@@download/ENCFF121AUE.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF843VYE bigBed narrowPeak optimal idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF044IYC 210156 ENCODE Processing Pipeline d587b7c42cfaeb1ddfcc26ed64cc72d2 https://www.encodeproject.org/files/ENCFF843VYE/@@download/ENCFF843VYE.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF298KVV bed narrowPeak conservative idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF352WWL, ENCFF558IHL, ENCFF730BUV 75017 ENCODE Processing Pipeline 8c52e51f13fc7065c5e787e825cc0956 https://www.encodeproject.org/files/ENCFF298KVV/@@download/ENCFF298KVV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF402AKI bigBed narrowPeak conservative idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF298KVV 177072 ENCODE Processing Pipeline 86f08872f6335430d0452626234135f4 https://www.encodeproject.org/files/ENCFF402AKI/@@download/ENCFF402AKI.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF347AMJ bigWig signal p-value ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF381GNT, ENCFF432CZZ 1352645570 ENCODE Processing Pipeline 2e56c04722bae0d5d02180b70df406cc https://www.encodeproject.org/files/ENCFF347AMJ/@@download/ENCFF347AMJ.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF044IYC bed narrowPeak optimal idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF352WWL, ENCFF558IHL, ENCFF730BUV 98535 ENCODE Processing Pipeline 00877a97c603db3f117a999a4ba2cadc https://www.encodeproject.org/files/ENCFF044IYC/@@download/ENCFF044IYC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF999DUA bigWig fold change over control ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF381GNT, ENCFF432CZZ 1699890537 ENCODE Processing Pipeline 93b16e3fae542a8495090766e76b9568 https://www.encodeproject.org/files/ENCFF999DUA/@@download/ENCFF999DUA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF042ALM bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF381GNT 6162477 ENCODE Processing Pipeline 5a6c3e1e696a522a86b9613551a9e64f https://www.encodeproject.org/files/ENCFF042ALM/@@download/ENCFF042ALM.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF582SDX bigWig fold change over control ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF432CZZ 1052033145 ENCODE Processing Pipeline 9d69fc1991f496b999df422cfc036b69 https://www.encodeproject.org/files/ENCFF582SDX/@@download/ENCFF582SDX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF975IMS bigBed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF694SDT 11383498 ENCODE Processing Pipeline d19f35a2379e04a945a41f36b8346015 https://www.encodeproject.org/files/ENCFF975IMS/@@download/ENCFF975IMS.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF760LFD bigBed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF918WSS 11222789 ENCODE Processing Pipeline b52dc6c936304b74942c5d78c6679ca2 https://www.encodeproject.org/files/ENCFF760LFD/@@download/ENCFF760LFD.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF694SDT bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF432CZZ 5975236 ENCODE Processing Pipeline 28bc6fd4056e6fc1e6f8ceb07539dd9e https://www.encodeproject.org/files/ENCFF694SDT/@@download/ENCFF694SDT.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF918WSS bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF381GNT, ENCFF432CZZ 6808042 ENCODE Processing Pipeline 458dd32085cada5ef0f71da28fba1be8 https://www.encodeproject.org/files/ENCFF918WSS/@@download/ENCFF918WSS.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF012BGJ bigBed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF042ALM 11384992 ENCODE Processing Pipeline ffa259f8ad3fc866614af065c35ca672 https://www.encodeproject.org/files/ENCFF012BGJ/@@download/ENCFF012BGJ.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF969IRU bed narrowPeak conservative idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF042ALM, ENCFF419RSJ, ENCFF694SDT, ENCFF918WSS 76087 ENCODE Processing Pipeline 71ae391f16fcc74691a24ea16bf70984 https://www.encodeproject.org/files/ENCFF969IRU/@@download/ENCFF969IRU.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF781FPX bigBed narrowPeak conservative idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF969IRU 179493 ENCODE Processing Pipeline 781aa3e5651cecb336043aa02bbe15f1 https://www.encodeproject.org/files/ENCFF781FPX/@@download/ENCFF781FPX.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF914BZU bigBed narrowPeak optimal idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF053AVA 212214 ENCODE Processing Pipeline 88168acf30782cb7ffe954886098cbf9 https://www.encodeproject.org/files/ENCFF914BZU/@@download/ENCFF914BZU.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF053AVA bed narrowPeak optimal idr thresholded peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF042ALM, ENCFF419RSJ, ENCFF694SDT, ENCFF918WSS 99145 ENCODE Processing Pipeline f401f499bff6b71aa7d62664996d22a5 https://www.encodeproject.org/files/ENCFF053AVA/@@download/ENCFF053AVA.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF146VSJ fastq reads ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF115RSO 2225137872 Michael Snyder, Stanford c96070480abaca3572273fda85a69faa SRA:SRR5111176 https://www.encodeproject.org/files/ENCFF146VSJ/@@download/ENCFF146VSJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF253QUP fastq reads ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF743IFE 2520920592 Michael Snyder, Stanford eef61dfb53db2e1cc1e2c95164d06ccd SRA:SRR5111177 https://www.encodeproject.org/files/ENCFF253QUP/@@download/ENCFF253QUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF115RSO fastq reads ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF146VSJ 2320881474 Michael Snyder, Stanford 7723e34dc92b2ff2ad7ee216a41b60d3 SRA:SRR5111176 https://www.encodeproject.org/files/ENCFF115RSO/@@download/ENCFF115RSO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF743IFE fastq reads ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF253QUP 2627653885 Michael Snyder, Stanford eb485662e03c48d282503a7cd913222d SRA:SRR5111177 https://www.encodeproject.org/files/ENCFF743IFE/@@download/ENCFF743IFE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF558LPR bam unfiltered alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF253QUP, ENCFF743IFE, ENCFF807MUK 5643296082 ENCODE Processing Pipeline 90593d0fe7f8cba480e1f88c6bc978b8 https://www.encodeproject.org/files/ENCFF558LPR/@@download/ENCFF558LPR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF343RSJ bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF253QUP, ENCFF743IFE, ENCFF807MUK 4603837806 ENCODE Processing Pipeline b376faa5149e0a9b4eb952ebdf819881 https://www.encodeproject.org/files/ENCFF343RSJ/@@download/ENCFF343RSJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF626OVJ bam unfiltered alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF115RSO, ENCFF146VSJ, ENCFF807MUK 5013120770 ENCODE Processing Pipeline 99041dddb9ffa6eccbea269b7eef0516 https://www.encodeproject.org/files/ENCFF626OVJ/@@download/ENCFF626OVJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF923TZZ bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF115RSO, ENCFF146VSJ, ENCFF807MUK 4200618100 ENCODE Processing Pipeline cd9ff0b0308591c86d9c1ecd55150e05 https://www.encodeproject.org/files/ENCFF923TZZ/@@download/ENCFF923TZZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF511BJO bam unfiltered alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF115RSO, ENCFF146VSJ, ENCFF643CGH 5016502382 ENCODE Processing Pipeline 4dfc4d9df49905ed7620d81b8de558d0 https://www.encodeproject.org/files/ENCFF511BJO/@@download/ENCFF511BJO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF651QJM bam unfiltered alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF253QUP, ENCFF643CGH, ENCFF743IFE 5647229656 ENCODE Processing Pipeline 21311d0d8e81600679e0507e855ecc9d https://www.encodeproject.org/files/ENCFF651QJM/@@download/ENCFF651QJM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF009XYU bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF253QUP, ENCFF643CGH, ENCFF743IFE 4605428207 ENCODE Processing Pipeline a40f576e082cca9d9ae660e34bf8540d https://www.encodeproject.org/files/ENCFF009XYU/@@download/ENCFF009XYU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF987ZJY bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF115RSO, ENCFF146VSJ, ENCFF643CGH 4201987098 ENCODE Processing Pipeline e8bc7b23a27b61b1bc94f3767e0f1c92 https://www.encodeproject.org/files/ENCFF987ZJY/@@download/ENCFF987ZJY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF072IVB bigWig signal p-value ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF923TZZ 1160872382 ENCODE Processing Pipeline b9548a722891fc3c387e008bd63a7dcb https://www.encodeproject.org/files/ENCFF072IVB/@@download/ENCFF072IVB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF203QKP bigWig signal p-value ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF343RSJ 1400340716 ENCODE Processing Pipeline b3d64050b9e479b69dd1a52121220ffb https://www.encodeproject.org/files/ENCFF203QKP/@@download/ENCFF203QKP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF567FDK bigWig signal p-value ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF343RSJ, ENCFF923TZZ 1377503071 ENCODE Processing Pipeline 96b0869472495b4fe0c1bacd87949ce0 https://www.encodeproject.org/files/ENCFF567FDK/@@download/ENCFF567FDK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF283UBH bigWig fold change over control ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF923TZZ 1271240557 ENCODE Processing Pipeline 29b37fc7050615950d30fa36aa8c2acf https://www.encodeproject.org/files/ENCFF283UBH/@@download/ENCFF283UBH.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF160UOY bigWig fold change over control ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF343RSJ 1386482086 ENCODE Processing Pipeline 4912231660d60975b2bce6126b6c493d https://www.encodeproject.org/files/ENCFF160UOY/@@download/ENCFF160UOY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF286PNI bigWig fold change over control ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF343RSJ, ENCFF923TZZ 1862988778 ENCODE Processing Pipeline 76bce9d6edb310357df6250137a1e951 https://www.encodeproject.org/files/ENCFF286PNI/@@download/ENCFF286PNI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF678AGF bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF923TZZ 7043805 ENCODE Processing Pipeline e5e28a3c36de2bedfc33769b7541eab9 https://www.encodeproject.org/files/ENCFF678AGF/@@download/ENCFF678AGF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF476ONF bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF343RSJ 7045249 ENCODE Processing Pipeline beabafaf330c948155b347c6c3ac2e50 https://www.encodeproject.org/files/ENCFF476ONF/@@download/ENCFF476ONF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF480EFN bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF343RSJ, ENCFF923TZZ 7234331 ENCODE Processing Pipeline 9bb5e738e636ae4cd2f2a7776675c7cb https://www.encodeproject.org/files/ENCFF480EFN/@@download/ENCFF480EFN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF219PKJ bigBed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF678AGF 13363189 ENCODE Processing Pipeline 1935e2ab3ad56048f8221393a7a89824 https://www.encodeproject.org/files/ENCFF219PKJ/@@download/ENCFF219PKJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF194TTY bigBed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF476ONF 13394574 ENCODE Processing Pipeline 5032f76dc55dd16016eb7f905747bbfd https://www.encodeproject.org/files/ENCFF194TTY/@@download/ENCFF194TTY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF951EFK bed narrowPeak conservative idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF476ONF, ENCFF480EFN, ENCFF678AGF 525960 ENCODE Processing Pipeline 97d0ee9af3e6c1f33c17461849554fa8 https://www.encodeproject.org/files/ENCFF951EFK/@@download/ENCFF951EFK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF717OGC bigBed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF480EFN 13175964 ENCODE Processing Pipeline 78e0b155d7985492fdd3f8adc3f75bfe https://www.encodeproject.org/files/ENCFF717OGC/@@download/ENCFF717OGC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF565KPE bigBed narrowPeak conservative idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF951EFK 1237154 ENCODE Processing Pipeline 1b34e5cf00288c767cd4d2fa0669a653 https://www.encodeproject.org/files/ENCFF565KPE/@@download/ENCFF565KPE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF732SYV bed narrowPeak optimal idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF476ONF, ENCFF480EFN, ENCFF678AGF 547710 ENCODE Processing Pipeline 7a908a7a2e4a13b0fef8a764c1c70d45 https://www.encodeproject.org/files/ENCFF732SYV/@@download/ENCFF732SYV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF304EVW bigBed narrowPeak optimal idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF732SYV 1282127 ENCODE Processing Pipeline fd4a699ccf6d094198cf6ae2db618b64 https://www.encodeproject.org/files/ENCFF304EVW/@@download/ENCFF304EVW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF937ZFI bigWig signal p-value ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF987ZJY 1180977082 ENCODE Processing Pipeline 28c6f5cf87db443f1d786ae72725f322 https://www.encodeproject.org/files/ENCFF937ZFI/@@download/ENCFF937ZFI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF506UBW bigWig signal p-value ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF009XYU 1384599914 ENCODE Processing Pipeline 089719adc41e2ef43560c98732d78f7c https://www.encodeproject.org/files/ENCFF506UBW/@@download/ENCFF506UBW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF330BTW bigWig signal p-value ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF009XYU, ENCFF987ZJY 1384142368 ENCODE Processing Pipeline 09f58fcc957b5fca00c92fee7f3edf4c https://www.encodeproject.org/files/ENCFF330BTW/@@download/ENCFF330BTW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF242YGP bigWig fold change over control ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF987ZJY 1280845570 ENCODE Processing Pipeline eaa720fa31de9a1dc6a505bf637914ee https://www.encodeproject.org/files/ENCFF242YGP/@@download/ENCFF242YGP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF395AUV bigWig fold change over control ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF009XYU 1337560392 ENCODE Processing Pipeline 2f7e4b3682e670d36bde83c75ef04653 https://www.encodeproject.org/files/ENCFF395AUV/@@download/ENCFF395AUV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF771CRO bigWig fold change over control ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF009XYU, ENCFF987ZJY 1876055971 ENCODE Processing Pipeline 29ced6276b719f8f28eec89ef54282c8 https://www.encodeproject.org/files/ENCFF771CRO/@@download/ENCFF771CRO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF232LVP bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF987ZJY 6963673 ENCODE Processing Pipeline 9f2ebb0d53eb01d7892fc977f841f0bb https://www.encodeproject.org/files/ENCFF232LVP/@@download/ENCFF232LVP.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF285JKO bigBed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF232LVP 13375004 ENCODE Processing Pipeline fde647cca3a302c4b9139a4ab798fde5 https://www.encodeproject.org/files/ENCFF285JKO/@@download/ENCFF285JKO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF322QWW bigBed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF332MLK 13382125 ENCODE Processing Pipeline 385d20e883ed4a24ff9705db21c45a2f https://www.encodeproject.org/files/ENCFF322QWW/@@download/ENCFF322QWW.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF332MLK bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF009XYU 6932394 ENCODE Processing Pipeline 3dc13ebddeac043ffa9b6e2984bbc7a2 https://www.encodeproject.org/files/ENCFF332MLK/@@download/ENCFF332MLK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF316AKN bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF009XYU, ENCFF987ZJY 7207366 ENCODE Processing Pipeline 040681e493beeb08d6872ee1e2244e39 https://www.encodeproject.org/files/ENCFF316AKN/@@download/ENCFF316AKN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF087CCO bed narrowPeak conservative idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF232LVP, ENCFF316AKN, ENCFF332MLK, ENCFF419RSJ 520554 ENCODE Processing Pipeline eacc736f4b6bdb5545a35fb9d9aeeace https://www.encodeproject.org/files/ENCFF087CCO/@@download/ENCFF087CCO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF183NXY bigBed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF316AKN 13181384 ENCODE Processing Pipeline 90d90fad7675711aead4747cb3299174 https://www.encodeproject.org/files/ENCFF183NXY/@@download/ENCFF183NXY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF867ORA bigBed narrowPeak conservative idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF087CCO 1231845 ENCODE Processing Pipeline 9a84fc9b5c38cdb78688b87fc4b24c38 https://www.encodeproject.org/files/ENCFF867ORA/@@download/ENCFF867ORA.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF608JPL bed narrowPeak optimal idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF232LVP, ENCFF316AKN, ENCFF332MLK, ENCFF419RSJ 546422 ENCODE Processing Pipeline 78adfa7e5dfc85d4db6e9fbff228c3b6 https://www.encodeproject.org/files/ENCFF608JPL/@@download/ENCFF608JPL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF175XRD bigBed narrowPeak optimal idr thresholded peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF608JPL 1286537 ENCODE Processing Pipeline f83c9cc54ee1a4443632c4a71bd9e60c https://www.encodeproject.org/files/ENCFF175XRD/@@download/ENCFF175XRD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF696BLE fastq reads ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 1 101 paired-ended 1 ENCFF185TWT 2484374749 Michael Snyder, Stanford 42892c1de2adc3b799d24f39a9c2e01d SRA:SRR6212688 https://www.encodeproject.org/files/ENCFF696BLE/@@download/ENCFF696BLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF185TWT fastq reads ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 1 101 paired-ended 2 ENCFF696BLE 2514977342 Michael Snyder, Stanford 0b110b09c0cb684162d4522190e15398 SRA:SRR6212688 https://www.encodeproject.org/files/ENCFF185TWT/@@download/ENCFF185TWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF453SOG fastq reads ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 1 101 paired-ended 1 ENCFF330LTF 2780362736 Michael Snyder, Stanford 102e7eba3523571b8714e1aa89033599 SRA:SRR6212687 https://www.encodeproject.org/files/ENCFF453SOG/@@download/ENCFF453SOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF330LTF fastq reads ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 1 101 paired-ended 2 ENCFF453SOG 2810646523 Michael Snyder, Stanford bcdcac60dedb176400d293ddf1695844 SRA:SRR6212687 https://www.encodeproject.org/files/ENCFF330LTF/@@download/ENCFF330LTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF209CHH bam unfiltered alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF185TWT, ENCFF643CGH, ENCFF696BLE 5560194279 ENCODE Processing Pipeline b39c2bb0b4626e2b33b83734aede0149 https://www.encodeproject.org/files/ENCFF209CHH/@@download/ENCFF209CHH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF990UII bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF185TWT, ENCFF643CGH, ENCFF696BLE 4617345368 ENCODE Processing Pipeline d40fa05f982fdde5242bd7519e368773 https://www.encodeproject.org/files/ENCFF990UII/@@download/ENCFF990UII.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF122PNY bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF330LTF, ENCFF453SOG, ENCFF643CGH 4946567249 ENCODE Processing Pipeline 8b9f1379c35f552f5a0a6e19664c7181 https://www.encodeproject.org/files/ENCFF122PNY/@@download/ENCFF122PNY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF509GKV bam unfiltered alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF330LTF, ENCFF453SOG, ENCFF807MUK 5644983401 ENCODE Processing Pipeline 7186dbd91699698ffcf818bdc790ec27 https://www.encodeproject.org/files/ENCFF509GKV/@@download/ENCFF509GKV.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF334LDR bam unfiltered alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF330LTF, ENCFF453SOG, ENCFF643CGH 5653030098 ENCODE Processing Pipeline 2a8b1a6d8e49a9b9ed5468add66fb973 https://www.encodeproject.org/files/ENCFF334LDR/@@download/ENCFF334LDR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF053WUE bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF330LTF, ENCFF453SOG, ENCFF807MUK 4942991053 ENCODE Processing Pipeline 4f8953b61388ceb95201691ad199b34b https://www.encodeproject.org/files/ENCFF053WUE/@@download/ENCFF053WUE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF695EZA bam unfiltered alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF185TWT, ENCFF696BLE, ENCFF807MUK 5556162417 ENCODE Processing Pipeline 9db9299c3ed5d7c48f267f24f13c1379 https://www.encodeproject.org/files/ENCFF695EZA/@@download/ENCFF695EZA.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF151XJE bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF185TWT, ENCFF696BLE, ENCFF807MUK 4613629853 ENCODE Processing Pipeline bc4d317191306b7e9ce2f46f928a44ef https://www.encodeproject.org/files/ENCFF151XJE/@@download/ENCFF151XJE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF242GOQ bigWig fold change over control ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF990UII 1392204243 ENCODE Processing Pipeline 30f72f1c81b5b2f27ab487007890c465 https://www.encodeproject.org/files/ENCFF242GOQ/@@download/ENCFF242GOQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF073UTZ bigBed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF088JIX 11240589 ENCODE Processing Pipeline 06ac3c3e1bcdb1ce23d3c5bd9dbd1fc6 https://www.encodeproject.org/files/ENCFF073UTZ/@@download/ENCFF073UTZ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF946FJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF876EPR 81852 ENCODE Processing Pipeline 58e9ef249fc056e919aea23aa0c2df76 https://www.encodeproject.org/files/ENCFF946FJZ/@@download/ENCFF946FJZ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF525GNA bigBed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF689KIF 11146595 ENCODE Processing Pipeline 0a2fcf34c7a2d6da01e6a98c0c465c4d https://www.encodeproject.org/files/ENCFF525GNA/@@download/ENCFF525GNA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF932ANQ bed narrowPeak optimal idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF001TDO, ENCFF231QHZ, ENCFF547ASW, ENCFF689KIF 37062 ENCODE Processing Pipeline f0834a4f2c674fca19bafa3de3faedf9 https://www.encodeproject.org/files/ENCFF932ANQ/@@download/ENCFF932ANQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF285NEB bigWig signal p-value ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF053WUE 1478328389 ENCODE Processing Pipeline df65adaa8a01252283544d01907b77c0 https://www.encodeproject.org/files/ENCFF285NEB/@@download/ENCFF285NEB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF434CMU bigWig signal p-value ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF122PNY 1212584859 ENCODE Processing Pipeline 699bd57e801372e9fcc0b1d7514f3d01 https://www.encodeproject.org/files/ENCFF434CMU/@@download/ENCFF434CMU.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF394FBT bigWig fold change over control ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF122PNY 1432727236 ENCODE Processing Pipeline 80dcb6dd839e766eee12c6de53ef1294 https://www.encodeproject.org/files/ENCFF394FBT/@@download/ENCFF394FBT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF980CIK bigBed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF858EJM 11369789 ENCODE Processing Pipeline 3a95d97ea039e44d929f4504b32c77b5 https://www.encodeproject.org/files/ENCFF980CIK/@@download/ENCFF980CIK.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF184CMC bigBed narrowPeak conservative idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF071RWT 79397 ENCODE Processing Pipeline 1fab250408dc4bf7b0ac3a6abd118b9b https://www.encodeproject.org/files/ENCFF184CMC/@@download/ENCFF184CMC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF405RFZ bigWig fold change over control ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF053WUE 1425827044 ENCODE Processing Pipeline d50be80fb9550530524ba4cc70366c1a https://www.encodeproject.org/files/ENCFF405RFZ/@@download/ENCFF405RFZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF455OZX bigWig fold change over control ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF053WUE, ENCFF151XJE 1986032014 ENCODE Processing Pipeline f5fc4dd94b22c6cb7794f577fdc37db2 https://www.encodeproject.org/files/ENCFF455OZX/@@download/ENCFF455OZX.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF689KIF bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF053WUE, ENCFF151XJE 7153495 ENCODE Processing Pipeline 5715333df469cf4032da9f518680fc2a https://www.encodeproject.org/files/ENCFF689KIF/@@download/ENCFF689KIF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF077IQW bigBed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF547ASW 11225716 ENCODE Processing Pipeline 49e16032888fcee0b2afd735e6a01c94 https://www.encodeproject.org/files/ENCFF077IQW/@@download/ENCFF077IQW.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF071RWT bed narrowPeak conservative idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF001TDO, ENCFF231QHZ, ENCFF547ASW, ENCFF689KIF 16154 ENCODE Processing Pipeline 41f0ac0b6b9b0f64c1a15d4da23e992c https://www.encodeproject.org/files/ENCFF071RWT/@@download/ENCFF071RWT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF238XZH bigWig signal p-value ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF151XJE 1331884957 ENCODE Processing Pipeline be1583b9c3a5e793aedf1455ba2ef1c4 https://www.encodeproject.org/files/ENCFF238XZH/@@download/ENCFF238XZH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF708TIY bigWig signal p-value ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF053WUE, ENCFF151XJE 1981319959 ENCODE Processing Pipeline d3d32a1610c51f38c61c8666bd139c70 https://www.encodeproject.org/files/ENCFF708TIY/@@download/ENCFF708TIY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF148DUC bigWig fold change over control ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF151XJE 1379640789 ENCODE Processing Pipeline 051677f1e8cc93b48ad45c12d799977f https://www.encodeproject.org/files/ENCFF148DUC/@@download/ENCFF148DUC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF078LSM bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF122PNY, ENCFF990UII 7156981 ENCODE Processing Pipeline 3a33413bd4cfd5ad17808e0af68db1e5 https://www.encodeproject.org/files/ENCFF078LSM/@@download/ENCFF078LSM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF547ASW bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF053WUE 6494730 ENCODE Processing Pipeline 02260bfb1ba8c4fd1ed7952451f3328d https://www.encodeproject.org/files/ENCFF547ASW/@@download/ENCFF547ASW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF976FUL bigBed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF078LSM 11134268 ENCODE Processing Pipeline 532fed778eea7ad618dbfad7cedbb95a https://www.encodeproject.org/files/ENCFF976FUL/@@download/ENCFF976FUL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF197HPW bigWig signal p-value ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF990UII 1291964299 ENCODE Processing Pipeline 8fa6882e99cd771969bcae44eb6091fe https://www.encodeproject.org/files/ENCFF197HPW/@@download/ENCFF197HPW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF386GRF bigWig signal p-value ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF122PNY, ENCFF990UII 1982573371 ENCODE Processing Pipeline 11c29b2837aba645dd84fd056113c583 https://www.encodeproject.org/files/ENCFF386GRF/@@download/ENCFF386GRF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF894TNN bigWig fold change over control ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF122PNY, ENCFF990UII 1992002254 ENCODE Processing Pipeline a08a2b55d2e904ecd3504a9cd33344a3 https://www.encodeproject.org/files/ENCFF894TNN/@@download/ENCFF894TNN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF858EJM bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF990UII 6300940 ENCODE Processing Pipeline 8bce77b2f5bdc8955a3f03f09a3d5534 https://www.encodeproject.org/files/ENCFF858EJM/@@download/ENCFF858EJM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF088JIX bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF122PNY 6495685 ENCODE Processing Pipeline ea6b2867818e1b11e0bdf19a9b1d4d44 https://www.encodeproject.org/files/ENCFF088JIX/@@download/ENCFF088JIX.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF231QHZ bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF151XJE 6304133 ENCODE Processing Pipeline 1b0ec212cbc234682f01ffb8fce8bb3b https://www.encodeproject.org/files/ENCFF231QHZ/@@download/ENCFF231QHZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF514RIE bed narrowPeak optimal idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF078LSM, ENCFF088JIX, ENCFF419RSJ, ENCFF858EJM 37395 ENCODE Processing Pipeline 93b23eb2523bdcc96f841e0e007e1d64 https://www.encodeproject.org/files/ENCFF514RIE/@@download/ENCFF514RIE.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF932PFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF932ANQ 112143 ENCODE Processing Pipeline babfd21f1e05595296611b52bf061e92 https://www.encodeproject.org/files/ENCFF932PFQ/@@download/ENCFF932PFQ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF536LVI bigBed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF231QHZ 11362302 ENCODE Processing Pipeline ee0e3d4c89727db61862255ff6c7355d https://www.encodeproject.org/files/ENCFF536LVI/@@download/ENCFF536LVI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF876EPR bed narrowPeak conservative idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF078LSM, ENCFF088JIX, ENCFF419RSJ, ENCFF858EJM 17129 ENCODE Processing Pipeline 0765cba87165c3d50a5d9d540d95c3a8 https://www.encodeproject.org/files/ENCFF876EPR/@@download/ENCFF876EPR.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF188APX bigBed narrowPeak optimal idr thresholded peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1, 2 ENCFF514RIE 113786 ENCODE Processing Pipeline 22b4233a02b5cf6117c53d3c58384d24 https://www.encodeproject.org/files/ENCFF188APX/@@download/ENCFF188APX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF418JIM fastq reads ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 1 ENCFF088PAW 3048711842 Michael Snyder, Stanford ea7930d50ebe1f9c07b10531f9e3f86d SRA:SRR6212844 https://www.encodeproject.org/files/ENCFF418JIM/@@download/ENCFF418JIM.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF801JGP fastq reads ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF671RFK 2589363074 Michael Snyder, Stanford fa7f9cc9bdc952dd670a174ef7f441ab SRA:SRR6212843 https://www.encodeproject.org/files/ENCFF801JGP/@@download/ENCFF801JGP.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF088PAW fastq reads ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 1 100 paired-ended 2 ENCFF418JIM 3392640468 Michael Snyder, Stanford 2803f0df4790bd06c3f606a3f96256f4 SRA:SRR6212844 https://www.encodeproject.org/files/ENCFF088PAW/@@download/ENCFF088PAW.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF671RFK fastq reads ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF801JGP 2651443471 Michael Snyder, Stanford 4c36e0f6c3cef8985798bf1a806676bb SRA:SRR6212843 https://www.encodeproject.org/files/ENCFF671RFK/@@download/ENCFF671RFK.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF515MJS bam unfiltered alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF671RFK, ENCFF801JGP 5058267888 ENCODE Processing Pipeline 344a8e29f66e731ad6905cf522ac35c9 https://www.encodeproject.org/files/ENCFF515MJS/@@download/ENCFF515MJS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF186TEA bam unfiltered alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF088PAW, ENCFF418JIM, ENCFF643CGH 6352859274 ENCODE Processing Pipeline d82fca299b8873380fccb69c0732d7c4 https://www.encodeproject.org/files/ENCFF186TEA/@@download/ENCFF186TEA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF063IDU bam unfiltered alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF088PAW, ENCFF418JIM, ENCFF807MUK 6342775157 ENCODE Processing Pipeline 365b0ad250eada97c111f1c711ca4627 https://www.encodeproject.org/files/ENCFF063IDU/@@download/ENCFF063IDU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF980NFR bam unfiltered alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF671RFK, ENCFF801JGP, ENCFF807MUK 5054696362 ENCODE Processing Pipeline 1a5e1342fef40604477d3bdd628fe513 https://www.encodeproject.org/files/ENCFF980NFR/@@download/ENCFF980NFR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF322EWP bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF671RFK, ENCFF801JGP 2273892480 ENCODE Processing Pipeline 9244e963d6c78ebe02eb72e254081412 https://www.encodeproject.org/files/ENCFF322EWP/@@download/ENCFF322EWP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF222WFW bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF671RFK, ENCFF801JGP, ENCFF807MUK 2273379195 ENCODE Processing Pipeline a164556d66313afe9558557256312f12 https://www.encodeproject.org/files/ENCFF222WFW/@@download/ENCFF222WFW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF929KZG bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF088PAW, ENCFF418JIM, ENCFF807MUK 4252088580 ENCODE Processing Pipeline 4a6d5bf7e6da6b12540cac2188786430 https://www.encodeproject.org/files/ENCFF929KZG/@@download/ENCFF929KZG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF942GSX bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF088PAW, ENCFF418JIM, ENCFF643CGH 4256769454 ENCODE Processing Pipeline ac42b90471dbe223d58c8ff6e62e4557 https://www.encodeproject.org/files/ENCFF942GSX/@@download/ENCFF942GSX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF209STH bigWig signal p-value ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF929KZG 1533213696 ENCODE Processing Pipeline 28f86658c303bd22f67406aea40775e6 https://www.encodeproject.org/files/ENCFF209STH/@@download/ENCFF209STH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF846MEK bigWig signal p-value ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF222WFW, ENCFF447KVS, ENCFF823USR 1204698679 ENCODE Processing Pipeline 097f154e1427fae2ed4db2e05b971abb https://www.encodeproject.org/files/ENCFF846MEK/@@download/ENCFF846MEK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF141BKY bigWig signal p-value ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF222WFW, ENCFF447KVS, ENCFF823USR, ENCFF929KZG 1868838299 ENCODE Processing Pipeline e73a6c284be0c91466c65ebba71b7215 https://www.encodeproject.org/files/ENCFF141BKY/@@download/ENCFF141BKY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF659QDG bigWig fold change over control ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF222WFW, ENCFF447KVS, ENCFF823USR 1113481945 ENCODE Processing Pipeline 381231bb819bb1b91684d673338c834c https://www.encodeproject.org/files/ENCFF659QDG/@@download/ENCFF659QDG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF961POM bigWig fold change over control ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF929KZG 1653577131 ENCODE Processing Pipeline 8c8033cf5f766af24bd2eef2d9ac8bb9 https://www.encodeproject.org/files/ENCFF961POM/@@download/ENCFF961POM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF772JEF bigWig fold change over control ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF222WFW, ENCFF447KVS, ENCFF823USR, ENCFF929KZG 1934700325 ENCODE Processing Pipeline 3157c60bd8818d63b0b2db12b46fb3d8 https://www.encodeproject.org/files/ENCFF772JEF/@@download/ENCFF772JEF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF012TME bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF222WFW, ENCFF447KVS, ENCFF823USR 6153180 ENCODE Processing Pipeline 13d20948c87dcdc52b12601b72938cc3 https://www.encodeproject.org/files/ENCFF012TME/@@download/ENCFF012TME.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF689XKH bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF929KZG 6741876 ENCODE Processing Pipeline 1503f8030056b359c7018fdb7ec6f49c https://www.encodeproject.org/files/ENCFF689XKH/@@download/ENCFF689XKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF060PFM bigBed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF012TME 11264894 ENCODE Processing Pipeline d379dfc51742aebad74984d6b82bfee5 https://www.encodeproject.org/files/ENCFF060PFM/@@download/ENCFF060PFM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF749UEV bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF222WFW, ENCFF447KVS, ENCFF823USR, ENCFF929KZG 7028287 ENCODE Processing Pipeline 062413bb2d145194ee2a84890172e930 https://www.encodeproject.org/files/ENCFF749UEV/@@download/ENCFF749UEV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF200ZRG bigBed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF689XKH 11235824 ENCODE Processing Pipeline 90cdad5bd8053a4b50fb3791a5ba1780 https://www.encodeproject.org/files/ENCFF200ZRG/@@download/ENCFF200ZRG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF720QDA bed narrowPeak conservative idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF012TME, ENCFF689XKH, ENCFF749UEV 42857 ENCODE Processing Pipeline 45edef57366977405c11f920ef6eeda7 https://www.encodeproject.org/files/ENCFF720QDA/@@download/ENCFF720QDA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF998ETP bigBed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF749UEV 11142455 ENCODE Processing Pipeline 328d3c9a71a3dabee7eb5eec7a0fade5 https://www.encodeproject.org/files/ENCFF998ETP/@@download/ENCFF998ETP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF575BSL bigBed narrowPeak conservative idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF720QDA 143892 ENCODE Processing Pipeline 616fbd4520b9d127573c68f1db4197d8 https://www.encodeproject.org/files/ENCFF575BSL/@@download/ENCFF575BSL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF287ORE bed narrowPeak optimal idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF001TDO, ENCFF012TME, ENCFF689XKH, ENCFF749UEV 68038 ENCODE Processing Pipeline 82dd3d27f3266ae674d6b855a13c6937 https://www.encodeproject.org/files/ENCFF287ORE/@@download/ENCFF287ORE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF498HZB bigBed narrowPeak optimal idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF287ORE 185371 ENCODE Processing Pipeline 57d65d7350e7d9e05653321f2f366d41 https://www.encodeproject.org/files/ENCFF498HZB/@@download/ENCFF498HZB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF560AZV bigWig signal p-value ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF191XYH, ENCFF322EWP, ENCFF746SKT 1271903697 ENCODE Processing Pipeline 2f876f67aec7df9e413c12af57ed095f https://www.encodeproject.org/files/ENCFF560AZV/@@download/ENCFF560AZV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF955SBE bigWig signal p-value ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF942GSX 1636839057 ENCODE Processing Pipeline 161aa6a4ce7471ff609192746010545e https://www.encodeproject.org/files/ENCFF955SBE/@@download/ENCFF955SBE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF145QRR bigWig signal p-value ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF191XYH, ENCFF322EWP, ENCFF746SKT, ENCFF942GSX 1903550754 ENCODE Processing Pipeline 23538c55f452b7ee449abf45ffd7dc6f https://www.encodeproject.org/files/ENCFF145QRR/@@download/ENCFF145QRR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF508OHA bigWig fold change over control ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF191XYH, ENCFF322EWP, ENCFF746SKT 1098699565 ENCODE Processing Pipeline aa85e59dfca975da56aa0951d735bf68 https://www.encodeproject.org/files/ENCFF508OHA/@@download/ENCFF508OHA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF061XVH bigWig fold change over control ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF942GSX 1652773123 ENCODE Processing Pipeline a7a08a30b0d8f8350e85c5938cd1e190 https://www.encodeproject.org/files/ENCFF061XVH/@@download/ENCFF061XVH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF784OCR bigWig fold change over control ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF191XYH, ENCFF322EWP, ENCFF746SKT, ENCFF942GSX 1948290563 ENCODE Processing Pipeline c84fb7e9fa8eb3a13bccec5d9e6f9e72 https://www.encodeproject.org/files/ENCFF784OCR/@@download/ENCFF784OCR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF524NSE bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF191XYH, ENCFF322EWP, ENCFF746SKT 6069701 ENCODE Processing Pipeline a37b0ea9f4b301791da0cf0971252134 https://www.encodeproject.org/files/ENCFF524NSE/@@download/ENCFF524NSE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF499GQF bigBed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF524NSE 11269373 ENCODE Processing Pipeline 4c803a47dc5e7d217a3a059192e5bb9d https://www.encodeproject.org/files/ENCFF499GQF/@@download/ENCFF499GQF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF325BRV bigBed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF094NLY 11250803 ENCODE Processing Pipeline e442585e8a951c91a8746f087f24bf74 https://www.encodeproject.org/files/ENCFF325BRV/@@download/ENCFF325BRV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF122CTK bigBed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF746GUD 11158878 ENCODE Processing Pipeline 1f8ee6bbb65b20e2fed4a83ce9b6d28f https://www.encodeproject.org/files/ENCFF122CTK/@@download/ENCFF122CTK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF094NLY bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF942GSX 6622921 ENCODE Processing Pipeline 5b879007547eaefea2cdf31f15b37f6a https://www.encodeproject.org/files/ENCFF094NLY/@@download/ENCFF094NLY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF746GUD bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF191XYH, ENCFF322EWP, ENCFF746SKT, ENCFF942GSX 6963102 ENCODE Processing Pipeline ff4284a8aca54c39234f9a669be994ca https://www.encodeproject.org/files/ENCFF746GUD/@@download/ENCFF746GUD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF151TEZ bigBed narrowPeak conservative idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF129XCG 145511 ENCODE Processing Pipeline 6091eae0750b837ac714597e7fdc980c https://www.encodeproject.org/files/ENCFF151TEZ/@@download/ENCFF151TEZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF129XCG bed narrowPeak conservative idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF094NLY, ENCFF419RSJ, ENCFF524NSE, ENCFF746GUD 43497 ENCODE Processing Pipeline a2627451de66f3d37c50ac2407614b35 https://www.encodeproject.org/files/ENCFF129XCG/@@download/ENCFF129XCG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF455HWV bed narrowPeak optimal idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF094NLY, ENCFF419RSJ, ENCFF524NSE, ENCFF746GUD 65705 ENCODE Processing Pipeline bcaf95433b1078d2140bac71d0fe96cb https://www.encodeproject.org/files/ENCFF455HWV/@@download/ENCFF455HWV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF189OSS bigBed narrowPeak optimal idr thresholded peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1, 2 ENCFF455HWV 182325 ENCODE Processing Pipeline 70febad34b11bf153a082dc1375def06 https://www.encodeproject.org/files/ENCFF189OSS/@@download/ENCFF189OSS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF708AQI fastq reads ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF569ROF 3202349302 Michael Snyder, Stanford e719d09ec6fa54ac9a9b4350fe13f5c5 SRA:SRR5111991 https://www.encodeproject.org/files/ENCFF708AQI/@@download/ENCFF708AQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF940QRR fastq reads ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF413RLX 2586748792 Michael Snyder, Stanford a837b4bdee28ec166bbdcd25f692fb0e SRA:SRR5111990 https://www.encodeproject.org/files/ENCFF940QRR/@@download/ENCFF940QRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF413RLX fastq reads ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF940QRR 2657295148 Michael Snyder, Stanford 46e77603560e480d9cf31dcac23aacaf SRA:SRR5111990 https://www.encodeproject.org/files/ENCFF413RLX/@@download/ENCFF413RLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF569ROF fastq reads ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF708AQI 3285733047 Michael Snyder, Stanford adbcbcf7bf0ca219ba0aa9548a876c50 SRA:SRR5111991 https://www.encodeproject.org/files/ENCFF569ROF/@@download/ENCFF569ROF.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF080KBG bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF413RLX, ENCFF807MUK, ENCFF940QRR 5043477594 ENCODE Processing Pipeline d32e02095b1da8ef943e128e74dc09b0 https://www.encodeproject.org/files/ENCFF080KBG/@@download/ENCFF080KBG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF331BYH bam unfiltered alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF413RLX, ENCFF807MUK, ENCFF940QRR 5793979189 ENCODE Processing Pipeline 992ffaf614d99e7f0391faad57e47e9a https://www.encodeproject.org/files/ENCFF331BYH/@@download/ENCFF331BYH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF371LFH bam unfiltered alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF569ROF, ENCFF708AQI, ENCFF807MUK 7041339821 ENCODE Processing Pipeline a0a881dac2e4fa4d6f132d6592125213 https://www.encodeproject.org/files/ENCFF371LFH/@@download/ENCFF371LFH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF370LNK bam unfiltered alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF413RLX, ENCFF643CGH, ENCFF940QRR 5802633516 ENCODE Processing Pipeline c3cb70a4ba5dfca7d9c03bc83f5a2135 https://www.encodeproject.org/files/ENCFF370LNK/@@download/ENCFF370LNK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF075AWO bam unfiltered alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF569ROF, ENCFF643CGH, ENCFF708AQI 7050043635 ENCODE Processing Pipeline 84f07ace04474296a46183b7794ca3ee https://www.encodeproject.org/files/ENCFF075AWO/@@download/ENCFF075AWO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF033YTZ bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF413RLX, ENCFF643CGH, ENCFF940QRR 5045706945 ENCODE Processing Pipeline 0b57d8a865626acfb3e7245af015f712 https://www.encodeproject.org/files/ENCFF033YTZ/@@download/ENCFF033YTZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF331WMN bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF569ROF, ENCFF643CGH, ENCFF708AQI 6074799754 ENCODE Processing Pipeline bf3b3f49c2c4403726be2021b9761c69 https://www.encodeproject.org/files/ENCFF331WMN/@@download/ENCFF331WMN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF180OJS bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF569ROF, ENCFF708AQI, ENCFF807MUK 6071482032 ENCODE Processing Pipeline 23878e425e357c862031567fa698dba6 https://www.encodeproject.org/files/ENCFF180OJS/@@download/ENCFF180OJS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF851MXQ bigWig signal p-value ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF080KBG 1436502593 ENCODE Processing Pipeline 238503bfe1904afdb6fb9743db110370 https://www.encodeproject.org/files/ENCFF851MXQ/@@download/ENCFF851MXQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF661IAP bigWig signal p-value ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF180OJS 1661162393 ENCODE Processing Pipeline f95f99021e16604226a31495834a1937 https://www.encodeproject.org/files/ENCFF661IAP/@@download/ENCFF661IAP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF830YQJ bigWig signal p-value ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF080KBG, ENCFF180OJS 1957105370 ENCODE Processing Pipeline f7b2d54f2ce47a7dfff4cb5bffd04a62 https://www.encodeproject.org/files/ENCFF830YQJ/@@download/ENCFF830YQJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF913NDK bigWig fold change over control ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF080KBG 1473202359 ENCODE Processing Pipeline b3f9d523465780898547eac9b978b830 https://www.encodeproject.org/files/ENCFF913NDK/@@download/ENCFF913NDK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF042EPY bigWig fold change over control ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF180OJS 1641074962 ENCODE Processing Pipeline 1edf1a91886b451526ef53cdfd1c8783 https://www.encodeproject.org/files/ENCFF042EPY/@@download/ENCFF042EPY.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF768QIR bigWig fold change over control ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF080KBG, ENCFF180OJS 2132609697 ENCODE Processing Pipeline 230749175ebde07ad606a9f01d2237ea https://www.encodeproject.org/files/ENCFF768QIR/@@download/ENCFF768QIR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF298TZR bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF080KBG 6482467 ENCODE Processing Pipeline ba1b3edc6f337ec78a9d72cf4816d344 https://www.encodeproject.org/files/ENCFF298TZR/@@download/ENCFF298TZR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF558KUD bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF180OJS 6722636 ENCODE Processing Pipeline 6944651a6d59336cd5f21fa8f5f559bd https://www.encodeproject.org/files/ENCFF558KUD/@@download/ENCFF558KUD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF589HSY bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF080KBG, ENCFF180OJS 7255163 ENCODE Processing Pipeline 582de2c30c8db58667a70492526fbbe6 https://www.encodeproject.org/files/ENCFF589HSY/@@download/ENCFF589HSY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF979OZH bigBed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF298TZR 11199813 ENCODE Processing Pipeline 3576863fde31877c40478b22aea0e6f7 https://www.encodeproject.org/files/ENCFF979OZH/@@download/ENCFF979OZH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF149JYS bigBed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF558KUD 11254878 ENCODE Processing Pipeline dff0c622f717321bc1f7bf71ad5e1ad5 https://www.encodeproject.org/files/ENCFF149JYS/@@download/ENCFF149JYS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF641UDC bigBed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF589HSY 11273142 ENCODE Processing Pipeline 8e9d04d36d41e814ca80ab0f92e1c203 https://www.encodeproject.org/files/ENCFF641UDC/@@download/ENCFF641UDC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF710QPE bed narrowPeak conservative idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF298TZR, ENCFF558KUD, ENCFF589HSY 27740 ENCODE Processing Pipeline 142f87b2c795320391ecbdbf98736945 https://www.encodeproject.org/files/ENCFF710QPE/@@download/ENCFF710QPE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF714VJU bed narrowPeak optimal idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF298TZR, ENCFF558KUD, ENCFF589HSY 47055 ENCODE Processing Pipeline 9b90f20605ad9b94682bfff1a44442fa https://www.encodeproject.org/files/ENCFF714VJU/@@download/ENCFF714VJU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF960YUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF710QPE 97530 ENCODE Processing Pipeline 6b835df80845ca0cfe63640ae4948ebb https://www.encodeproject.org/files/ENCFF960YUZ/@@download/ENCFF960YUZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF477CUY bigBed narrowPeak optimal idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF714VJU 125912 ENCODE Processing Pipeline 686fa3cf893dbc91bb441cb5a255a432 https://www.encodeproject.org/files/ENCFF477CUY/@@download/ENCFF477CUY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF810GCB bigWig signal p-value ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF033YTZ 1487714449 ENCODE Processing Pipeline 40fcff40d6948c84348bfce1bd4e5661 https://www.encodeproject.org/files/ENCFF810GCB/@@download/ENCFF810GCB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF469FLR bigWig signal p-value ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF331WMN 1658210154 ENCODE Processing Pipeline 09003717e445439268d241ed4d0655c3 https://www.encodeproject.org/files/ENCFF469FLR/@@download/ENCFF469FLR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF286PES bigWig signal p-value ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF033YTZ, ENCFF331WMN 1994713162 ENCODE Processing Pipeline a92a98088d76d9d3fbc05650146abc77 https://www.encodeproject.org/files/ENCFF286PES/@@download/ENCFF286PES.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF603MIW bigWig fold change over control ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF033YTZ 1489016119 ENCODE Processing Pipeline d17c7a2b842f199c477df0077a87d302 https://www.encodeproject.org/files/ENCFF603MIW/@@download/ENCFF603MIW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF161OLA bigWig fold change over control ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF331WMN 1642775460 ENCODE Processing Pipeline c7b8f8d7ba0b5175d50def3e54298565 https://www.encodeproject.org/files/ENCFF161OLA/@@download/ENCFF161OLA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF859VKK bigWig fold change over control ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF033YTZ, ENCFF331WMN 2171621186 ENCODE Processing Pipeline e4458c05ef1fb31bab0e5e26621240df https://www.encodeproject.org/files/ENCFF859VKK/@@download/ENCFF859VKK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF323BRI bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF033YTZ 6305462 ENCODE Processing Pipeline 514c78de5ede1fa6c6b4f895adc1ce5e https://www.encodeproject.org/files/ENCFF323BRI/@@download/ENCFF323BRI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF048EHA bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF331WMN 6608091 ENCODE Processing Pipeline 3a7f46527ec990e0f78ef30cce528d3d https://www.encodeproject.org/files/ENCFF048EHA/@@download/ENCFF048EHA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF852QSW bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF033YTZ, ENCFF331WMN 7216053 ENCODE Processing Pipeline 205959f951d544fe44dbb07bd9fa3d75 https://www.encodeproject.org/files/ENCFF852QSW/@@download/ENCFF852QSW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF128BQV bigBed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF323BRI 11207254 ENCODE Processing Pipeline dc30cc42026d306c5b78d8773e509df1 https://www.encodeproject.org/files/ENCFF128BQV/@@download/ENCFF128BQV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF472DHC bigBed narrowPeak conservative idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF127MVR 114554 ENCODE Processing Pipeline 7ad48199744c0ffe11bef625331d73b5 https://www.encodeproject.org/files/ENCFF472DHC/@@download/ENCFF472DHC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF306DCZ bigBed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF852QSW 11282166 ENCODE Processing Pipeline cce2424afafc075488bb0975cd1d457c https://www.encodeproject.org/files/ENCFF306DCZ/@@download/ENCFF306DCZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF315PFU bigBed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF048EHA 11257907 ENCODE Processing Pipeline 6feeb9f6ccd715ed37a59ebc993a761b https://www.encodeproject.org/files/ENCFF315PFU/@@download/ENCFF315PFU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF045YGV bed narrowPeak optimal idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF048EHA, ENCFF323BRI, ENCFF419RSJ, ENCFF852QSW 47716 ENCODE Processing Pipeline 204f96adc46ce3491d20efd8a7250c2d https://www.encodeproject.org/files/ENCFF045YGV/@@download/ENCFF045YGV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF127MVR bed narrowPeak conservative idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF048EHA, ENCFF323BRI, ENCFF419RSJ, ENCFF852QSW 28155 ENCODE Processing Pipeline e3b87b19896c80af71037e3dc0f76d80 https://www.encodeproject.org/files/ENCFF127MVR/@@download/ENCFF127MVR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF830ZRO bigBed narrowPeak optimal idr thresholded peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF045YGV 150529 ENCODE Processing Pipeline 5690d8aa98c2d64507d46442f7e78548 https://www.encodeproject.org/files/ENCFF830ZRO/@@download/ENCFF830ZRO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF874VUK bam unfiltered alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 100 ENCFF212GZO, ENCFF480SOQ, ENCFF807MUK 5539591116 ENCODE Processing Pipeline 12852f04002d529d31fa4018d2267f78 https://www.encodeproject.org/files/ENCFF874VUK/@@download/ENCFF874VUK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF480SOQ fastq reads ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 1 100 paired-ended 1 ENCFF212GZO 2503175736 Michael Snyder, Stanford 5d7206515d78f24df17e653a913b0070 https://www.encodeproject.org/files/ENCFF480SOQ/@@download/ENCFF480SOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF212GZO fastq reads ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 1 100 paired-ended 2 ENCFF480SOQ 2510143915 Michael Snyder, Stanford fc16d249be3554d3188ee0f5f138cf8a https://www.encodeproject.org/files/ENCFF212GZO/@@download/ENCFF212GZO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF838ZQW bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 100 ENCFF212GZO, ENCFF480SOQ, ENCFF807MUK 4712027242 ENCODE Processing Pipeline 383f7624a8ac2145bfaa68e4c50d365f https://www.encodeproject.org/files/ENCFF838ZQW/@@download/ENCFF838ZQW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF342DMV bigWig signal p-value ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF049MPQ, ENCFF838ZQW 1119674401 ENCODE Processing Pipeline 037a4d278ede55085dd455c49d1f656c https://www.encodeproject.org/files/ENCFF342DMV/@@download/ENCFF342DMV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF369XGE bigWig fold change over control ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF049MPQ, ENCFF838ZQW 1151270330 ENCODE Processing Pipeline 66b6f5e8e52409381330ae5806ae9c47 https://www.encodeproject.org/files/ENCFF369XGE/@@download/ENCFF369XGE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF713VLK fastq reads ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 2 ENCFF473SFU 3710377539 Michael Snyder, Stanford 2adab507b21f8eee9b403f2ffe5283df https://www.encodeproject.org/files/ENCFF713VLK/@@download/ENCFF713VLK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF473SFU fastq reads ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 1 ENCFF713VLK 3695267517 Michael Snyder, Stanford 8043abcc38b374a74d35fda1fcc9ed56 https://www.encodeproject.org/files/ENCFF473SFU/@@download/ENCFF473SFU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF787HOD bam unfiltered alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 100 ENCFF212GZO, ENCFF480SOQ, ENCFF643CGH 5550310322 ENCODE Processing Pipeline ce70361321006827bd5f45060ef958bd https://www.encodeproject.org/files/ENCFF787HOD/@@download/ENCFF787HOD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF980DDZ bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 100 ENCFF212GZO, ENCFF480SOQ, ENCFF643CGH 4719321143 ENCODE Processing Pipeline ee85285199d385a593e0f82a244d85cf https://www.encodeproject.org/files/ENCFF980DDZ/@@download/ENCFF980DDZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF739MCI bam unfiltered alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 101 ENCFF473SFU, ENCFF643CGH, ENCFF713VLK 7098273884 ENCODE Processing Pipeline a76de71922fa2627db812b918a3d48bf https://www.encodeproject.org/files/ENCFF739MCI/@@download/ENCFF739MCI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF292HXN bam unfiltered alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 101 ENCFF473SFU, ENCFF713VLK, ENCFF807MUK 7087646901 ENCODE Processing Pipeline bf8c3570e4a78020ad55bc9e743504c0 https://www.encodeproject.org/files/ENCFF292HXN/@@download/ENCFF292HXN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF639RIW bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 101 ENCFF473SFU, ENCFF713VLK, ENCFF807MUK 5639361993 ENCODE Processing Pipeline a4d6dea9056b29b877205f44f74f4ce7 https://www.encodeproject.org/files/ENCFF639RIW/@@download/ENCFF639RIW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF003FWA bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 101 ENCFF473SFU, ENCFF643CGH, ENCFF713VLK 5643514336 ENCODE Processing Pipeline 84075435b021b055426099a2d23681ce https://www.encodeproject.org/files/ENCFF003FWA/@@download/ENCFF003FWA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF684RTS bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF003FWA, ENCFF291AFY, ENCFF426RDP 6554818 ENCODE Processing Pipeline b244436e554a1f3f0e369e488fa747e5 https://www.encodeproject.org/files/ENCFF684RTS/@@download/ENCFF684RTS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF626LDS bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF003FWA, ENCFF291AFY, ENCFF426RDP, ENCFF980DDZ 7059399 ENCODE Processing Pipeline 6372255d5dcfa7249ed601282ce46497 https://www.encodeproject.org/files/ENCFF626LDS/@@download/ENCFF626LDS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF334PCZ bed narrowPeak conservative idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF246WTH, ENCFF419RSJ, ENCFF626LDS, ENCFF684RTS 33005 ENCODE Processing Pipeline 2ba253a2cc5ccefa980d28267a09065a https://www.encodeproject.org/files/ENCFF334PCZ/@@download/ENCFF334PCZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF104DOO bigWig signal p-value ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF291AFY, ENCFF980DDZ 1134955298 ENCODE Processing Pipeline 754da42fba8b92479d0990a9b42a8001 https://www.encodeproject.org/files/ENCFF104DOO/@@download/ENCFF104DOO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF620RPM bed narrowPeak optimal idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF246WTH, ENCFF419RSJ, ENCFF626LDS, ENCFF684RTS 61417 ENCODE Processing Pipeline 6561d901c83ed16eecf3a3cb4e804cbd https://www.encodeproject.org/files/ENCFF620RPM/@@download/ENCFF620RPM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF128DJW bigBed narrowPeak optimal idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF620RPM 172645 ENCODE Processing Pipeline 233abc6fcde7537b14a45937010da9b4 https://www.encodeproject.org/files/ENCFF128DJW/@@download/ENCFF128DJW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF497NAI bigWig fold change over control ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF291AFY, ENCFF980DDZ 1151793273 ENCODE Processing Pipeline 2ab4c1490a4ef80bbd46bd884397fbdb https://www.encodeproject.org/files/ENCFF497NAI/@@download/ENCFF497NAI.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF080KDV bigWig signal p-value ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF003FWA, ENCFF291AFY, ENCFF426RDP 1652041792 ENCODE Processing Pipeline 5b6a5da7b01271d3fdd64a9657e04f23 https://www.encodeproject.org/files/ENCFF080KDV/@@download/ENCFF080KDV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF931FJL bigWig fold change over control ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF003FWA, ENCFF291AFY, ENCFF426RDP, ENCFF980DDZ 2149090938 ENCODE Processing Pipeline c7c03e3bb87fa6f69ddef9c56e37498a https://www.encodeproject.org/files/ENCFF931FJL/@@download/ENCFF931FJL.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF571OWI bigBed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF626LDS 11000204 ENCODE Processing Pipeline 1148068522a42e5bdf564e6c3282e309 https://www.encodeproject.org/files/ENCFF571OWI/@@download/ENCFF571OWI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF691VST bigBed narrowPeak conservative idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF334PCZ 107079 ENCODE Processing Pipeline 1e5ad204b8c14073614ae37b563af311 https://www.encodeproject.org/files/ENCFF691VST/@@download/ENCFF691VST.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF178YOX bigWig signal p-value ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF049MPQ, ENCFF583FAG, ENCFF639RIW, ENCFF838ZQW 1814300764 ENCODE Processing Pipeline f32b3ed3cf56a8e5e918dd735b04502c https://www.encodeproject.org/files/ENCFF178YOX/@@download/ENCFF178YOX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF988SMP bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF049MPQ, ENCFF583FAG, ENCFF639RIW 6553975 ENCODE Processing Pipeline 708e04a9beb3d71932f847b80bf8276a https://www.encodeproject.org/files/ENCFF988SMP/@@download/ENCFF988SMP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF820VZT bigBed narrowPeak optimal idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF178LCE 168047 ENCODE Processing Pipeline 1c63494a3c1bfee3f23d0057fe543ab9 https://www.encodeproject.org/files/ENCFF820VZT/@@download/ENCFF820VZT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF717ZYK bigWig signal p-value ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF003FWA, ENCFF291AFY, ENCFF426RDP, ENCFF980DDZ 1934702305 ENCODE Processing Pipeline 3fd39962b01920e81c8476a953d9d955 https://www.encodeproject.org/files/ENCFF717ZYK/@@download/ENCFF717ZYK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF145RNG bigWig fold change over control ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF003FWA, ENCFF291AFY, ENCFF426RDP 1657548478 ENCODE Processing Pipeline db1e129c0f05001d2d6885eff96a4766 https://www.encodeproject.org/files/ENCFF145RNG/@@download/ENCFF145RNG.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF093JIQ bigWig signal p-value ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF049MPQ, ENCFF583FAG, ENCFF639RIW 1723544500 ENCODE Processing Pipeline 835d30890a37df087373067f48f68fef https://www.encodeproject.org/files/ENCFF093JIQ/@@download/ENCFF093JIQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF176ZIJ bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF049MPQ, ENCFF583FAG, ENCFF639RIW, ENCFF838ZQW 7049908 ENCODE Processing Pipeline 40ce8504ee2c1555235f29e35270ca5f https://www.encodeproject.org/files/ENCFF176ZIJ/@@download/ENCFF176ZIJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF017SJV bigBed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF740DFA 11069585 ENCODE Processing Pipeline 740fd8b132863d671b7ef3cd39a73143 https://www.encodeproject.org/files/ENCFF017SJV/@@download/ENCFF017SJV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF071MEN bigBed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF246WTH 11087911 ENCODE Processing Pipeline 3e376a346ab1f530538a1f5dfec10fa0 https://www.encodeproject.org/files/ENCFF071MEN/@@download/ENCFF071MEN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF167EWU bed narrowPeak conservative idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF001TDO, ENCFF176ZIJ, ENCFF740DFA, ENCFF988SMP 31605 ENCODE Processing Pipeline dc65c226eb3f7eee842f50d4c00691ea https://www.encodeproject.org/files/ENCFF167EWU/@@download/ENCFF167EWU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF246WTH bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF291AFY, ENCFF980DDZ 6226937 ENCODE Processing Pipeline 7c4b333a560c56dbd1ad1b22aa25b658 https://www.encodeproject.org/files/ENCFF246WTH/@@download/ENCFF246WTH.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF433GDP bigBed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF684RTS 11227635 ENCODE Processing Pipeline 0e2f1f70bcb4eaaf0c1a1590b8570e84 https://www.encodeproject.org/files/ENCFF433GDP/@@download/ENCFF433GDP.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF586OEO bigWig fold change over control ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF049MPQ, ENCFF583FAG, ENCFF639RIW, ENCFF838ZQW 2178622997 ENCODE Processing Pipeline af612db2b49c6e00f9bc23eceff55a31 https://www.encodeproject.org/files/ENCFF586OEO/@@download/ENCFF586OEO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF740DFA bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF049MPQ, ENCFF838ZQW 6221097 ENCODE Processing Pipeline a670810c359adfc69ab1acb6b56dbe77 https://www.encodeproject.org/files/ENCFF740DFA/@@download/ENCFF740DFA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF276BCJ bigBed narrowPeak conservative idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF167EWU 103673 ENCODE Processing Pipeline 75063f3bff6fe6ecb647ab490f055fdc https://www.encodeproject.org/files/ENCFF276BCJ/@@download/ENCFF276BCJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF178LCE bed narrowPeak optimal idr thresholded peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF001TDO, ENCFF176ZIJ, ENCFF740DFA, ENCFF988SMP 59384 ENCODE Processing Pipeline 615eeee00b09b2d3f598326eb3bee61d https://www.encodeproject.org/files/ENCFF178LCE/@@download/ENCFF178LCE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF689LBO bigWig fold change over control ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF049MPQ, ENCFF583FAG, ENCFF639RIW 1652131622 ENCODE Processing Pipeline 1e0f6a2ff800361327df8ed0ee713103 https://www.encodeproject.org/files/ENCFF689LBO/@@download/ENCFF689LBO.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF241VYP bigBed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 ENCFF988SMP 11206865 ENCODE Processing Pipeline cc64253dbc8d60b2938205723ae8d1f1 https://www.encodeproject.org/files/ENCFF241VYP/@@download/ENCFF241VYP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF898QDF bigBed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2, 3 ENCFF176ZIJ 10983220 ENCODE Processing Pipeline 82ddcf0b30387492fa4c706560815e09 https://www.encodeproject.org/files/ENCFF898QDF/@@download/ENCFF898QDF.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF769OUG bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF708BOT, ENCFF807MUK 5486994260 ENCODE Processing Pipeline d35a2f7e9270e9d6f76f037dca39f655 https://www.encodeproject.org/files/ENCFF769OUG/@@download/ENCFF769OUG.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF644ETK bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF807MUK 5153285916 ENCODE Processing Pipeline e52de33e3725c7e91eddf2472f77257d https://www.encodeproject.org/files/ENCFF644ETK/@@download/ENCFF644ETK.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF708BOT fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF025TUY 2433068845 Michael Snyder, Stanford e6875ce3bd7f8fced540d3f4e24ce65f SRA:SRR5111256 https://www.encodeproject.org/files/ENCFF708BOT/@@download/ENCFF708BOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF025TUY fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF708BOT 2509245871 Michael Snyder, Stanford f1c8d42d5635d456c6247c4ab5f91535 SRA:SRR5111256 https://www.encodeproject.org/files/ENCFF025TUY/@@download/ENCFF025TUY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF379KSR fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF441WIT 2277843351 Michael Snyder, Stanford 1ea598d3096e981402402be64300095d SRA:SRR5111255 https://www.encodeproject.org/files/ENCFF379KSR/@@download/ENCFF379KSR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF441WIT fastq reads ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF379KSR 2350310808 Michael Snyder, Stanford e7a9d936eb5a38ba07c13754e1f02e1a SRA:SRR5111255 https://www.encodeproject.org/files/ENCFF441WIT/@@download/ENCFF441WIT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF959KSA bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF025TUY, ENCFF708BOT, ENCFF807MUK 4651934731 ENCODE Processing Pipeline 80dbf56e81bfa8a07b70efa1345bd6a6 https://www.encodeproject.org/files/ENCFF959KSA/@@download/ENCFF959KSA.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF404VIO bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF379KSR, ENCFF441WIT, ENCFF807MUK 4330864677 ENCODE Processing Pipeline f055d79c105759e0b19f6ead66343556 https://www.encodeproject.org/files/ENCFF404VIO/@@download/ENCFF404VIO.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF512UCA bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 1228361433 ENCODE Processing Pipeline 70db4514d3782c256d0fb32b5a5bb613 https://www.encodeproject.org/files/ENCFF512UCA/@@download/ENCFF512UCA.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF271DMN bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 1202888655 ENCODE Processing Pipeline c69a9c958913d4bf421439e6b2cf1fc9 https://www.encodeproject.org/files/ENCFF271DMN/@@download/ENCFF271DMN.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF186IHF bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 992907008 ENCODE Processing Pipeline fd37b7051f40b321f981a48c7b5533ae https://www.encodeproject.org/files/ENCFF186IHF/@@download/ENCFF186IHF.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF635KGM bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF404VIO, ENCFF941TZZ, ENCFF959KSA 2039473455 ENCODE Processing Pipeline 536a241bdd9f68f6ba8fd0916f890721 https://www.encodeproject.org/files/ENCFF635KGM/@@download/ENCFF635KGM.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF019TVN bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 6167163 ENCODE Processing Pipeline 3ea79eef8b09498fa98e859900b7a667 https://www.encodeproject.org/files/ENCFF019TVN/@@download/ENCFF019TVN.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF955KPL bigBed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF608IGE 127139 ENCODE Processing Pipeline f0f5bdac3082e35a81e7c382e2d4b33b https://www.encodeproject.org/files/ENCFF955KPL/@@download/ENCFF955KPL.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched status, mismatched file status ENCFF026GPY bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF404VIO, ENCFF941TZZ, ENCFF959KSA 2153451629 ENCODE Processing Pipeline a0c5bc9619bfec328f69a8c5aad97808 https://www.encodeproject.org/files/ENCFF026GPY/@@download/ENCFF026GPY.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF015RED bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 6222237 ENCODE Processing Pipeline 7ccc53751ec7dd1c471fe8c24e31311a https://www.encodeproject.org/files/ENCFF015RED/@@download/ENCFF015RED.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF009QEI bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF404VIO, ENCFF941TZZ, ENCFF959KSA 7148025 ENCODE Processing Pipeline 0350614108e084a913ba2103902554b5 https://www.encodeproject.org/files/ENCFF009QEI/@@download/ENCFF009QEI.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF377OUN bigBed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF345OJQ 86174 ENCODE Processing Pipeline 5421d9d142e96d78741c3d7abbc26307 https://www.encodeproject.org/files/ENCFF377OUN/@@download/ENCFF377OUN.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched status, mismatched file status ENCFF582VHS bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 1141620802 ENCODE Processing Pipeline 00a9ed7e9f362dc4e96c84c71f91a84f https://www.encodeproject.org/files/ENCFF582VHS/@@download/ENCFF582VHS.bigWig hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF714BZH bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF015RED 11340006 ENCODE Processing Pipeline dc7171df8e4e601cf0bcfefb7c82dd9c https://www.encodeproject.org/files/ENCFF714BZH/@@download/ENCFF714BZH.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF344OJI bed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF009QEI, ENCFF015RED, ENCFF019TVN 44947 ENCODE Processing Pipeline 8f76cd4eaefe9893f5ed8affc6e9a2ad https://www.encodeproject.org/files/ENCFF344OJI/@@download/ENCFF344OJI.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF240QHO bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF019TVN 11414396 ENCODE Processing Pipeline 86da601eaf959f299d29522ea4a97cd6 https://www.encodeproject.org/files/ENCFF240QHO/@@download/ENCFF240QHO.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF693TRI bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF009QEI 11291235 ENCODE Processing Pipeline f665c383add636ca73a0d7f720ce6a4e https://www.encodeproject.org/files/ENCFF693TRI/@@download/ENCFF693TRI.bigBed hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF506ECO bed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF009QEI, ENCFF015RED, ENCFF019TVN 18616 ENCODE Processing Pipeline 13364c0c17adef54726c027f852ab309 https://www.encodeproject.org/files/ENCFF506ECO/@@download/ENCFF506ECO.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF675OUX bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF643CGH 5157169086 ENCODE Processing Pipeline bc5bd732aec252ca59ee646bcbf7055a https://www.encodeproject.org/files/ENCFF675OUX/@@download/ENCFF675OUX.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF922RKY bam unfiltered alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF643CGH, ENCFF708BOT 5490803640 ENCODE Processing Pipeline 3927d5d4ededde96eadc0135cd0b7ea0 https://www.encodeproject.org/files/ENCFF922RKY/@@download/ENCFF922RKY.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF053VFZ bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF643CGH 4337112041 ENCODE Processing Pipeline b7c07f813eb938cf9efd6cdec8fbbe15 https://www.encodeproject.org/files/ENCFF053VFZ/@@download/ENCFF053VFZ.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF629WCK bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF643CGH, ENCFF708BOT 4657991981 ENCODE Processing Pipeline 5f5381c2b38e3e71832de0b71b74562e https://www.encodeproject.org/files/ENCFF629WCK/@@download/ENCFF629WCK.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF754CDS bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF053VFZ, ENCFF879YMO 974822007 ENCODE Processing Pipeline 27568feaa32beab3f4d3dccc832c0d2b https://www.encodeproject.org/files/ENCFF754CDS/@@download/ENCFF754CDS.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF739GBD bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF629WCK 942136244 ENCODE Processing Pipeline ae42ab46c3308a321e058a39a7dab021 https://www.encodeproject.org/files/ENCFF739GBD/@@download/ENCFF739GBD.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF901ZYU bigWig signal p-value ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF053VFZ, ENCFF574BGV, ENCFF629WCK, ENCFF879YMO 2156869788 ENCODE Processing Pipeline 10797341a557b602944a7184caa65871 https://www.encodeproject.org/files/ENCFF901ZYU/@@download/ENCFF901ZYU.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF603UBS bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF053VFZ, ENCFF879YMO 1146906358 ENCODE Processing Pipeline 3969609e7ed52e09a9aa75ad4af0d9db https://www.encodeproject.org/files/ENCFF603UBS/@@download/ENCFF603UBS.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF322QQG bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF629WCK 1155729359 ENCODE Processing Pipeline ca8ad70151e63f1a70eddad48ecdb030 https://www.encodeproject.org/files/ENCFF322QQG/@@download/ENCFF322QQG.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF764KSL bigWig fold change over control ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF053VFZ, ENCFF574BGV, ENCFF629WCK, ENCFF879YMO 2147528018 ENCODE Processing Pipeline fc8959794f6c7eb3fd2fdaa03e3b3a35 https://www.encodeproject.org/files/ENCFF764KSL/@@download/ENCFF764KSL.bigWig GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF825KZX bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF487HYJ 11299213 ENCODE Processing Pipeline f19c957843ea15ecf594f970953835af https://www.encodeproject.org/files/ENCFF825KZX/@@download/ENCFF825KZX.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF259DUR bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF699SFJ 11338038 ENCODE Processing Pipeline 4b219e9f684e786eddda3bb3b8a84eae https://www.encodeproject.org/files/ENCFF259DUR/@@download/ENCFF259DUR.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF699SFJ bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF629WCK 6054821 ENCODE Processing Pipeline 7a57fdeea94de916903b28d762a73966 https://www.encodeproject.org/files/ENCFF699SFJ/@@download/ENCFF699SFJ.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF088PZZ bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF053VFZ, ENCFF879YMO 5956408 ENCODE Processing Pipeline 8b6668903e59d57581d746761078cb65 https://www.encodeproject.org/files/ENCFF088PZZ/@@download/ENCFF088PZZ.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF487HYJ bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF053VFZ, ENCFF574BGV, ENCFF629WCK, ENCFF879YMO 7094057 ENCODE Processing Pipeline f9c961856e44c0f7bc42b40549287798 https://www.encodeproject.org/files/ENCFF487HYJ/@@download/ENCFF487HYJ.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF821YKR bigBed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF699GCM 86957 ENCODE Processing Pipeline ed34afa4de7f2c32ff737991fb0790a2 https://www.encodeproject.org/files/ENCFF821YKR/@@download/ENCFF821YKR.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF906FWW bigBed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF088PZZ 11405150 ENCODE Processing Pipeline 45d6d21aeab60058e515d0c95bbcb565 https://www.encodeproject.org/files/ENCFF906FWW/@@download/ENCFF906FWW.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF699GCM bed narrowPeak conservative idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF088PZZ, ENCFF419RSJ, ENCFF487HYJ, ENCFF699SFJ 18700 ENCODE Processing Pipeline dafe80ab8dfd946b3c16a5e13d98d317 https://www.encodeproject.org/files/ENCFF699GCM/@@download/ENCFF699GCM.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF500RBO bed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF088PZZ, ENCFF419RSJ, ENCFF487HYJ, ENCFF699SFJ 44183 ENCODE Processing Pipeline 9fe3473912e0bddc4a036473555613ba https://www.encodeproject.org/files/ENCFF500RBO/@@download/ENCFF500RBO.bed.gz GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF551ECC bigBed narrowPeak optimal idr thresholded peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF500RBO 127430 ENCODE Processing Pipeline 6fdd5386850f8a8a8d423ecc6932d85c https://www.encodeproject.org/files/ENCFF551ECC/@@download/ENCFF551ECC.bigBed GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF047KRZ bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF690LCG, ENCFF807MUK 6791242841 ENCODE Processing Pipeline e1dfe61a983e5f403669fb4d37e3bd74 https://www.encodeproject.org/files/ENCFF047KRZ/@@download/ENCFF047KRZ.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF506RUD bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF807MUK, ENCFF918XGV 7037337659 ENCODE Processing Pipeline a09dfa38e71c313c382d44e4026302b3 https://www.encodeproject.org/files/ENCFF506RUD/@@download/ENCFF506RUD.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF088UFA fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 1 ENCFF918XGV 3229829366 Michael Snyder, Stanford 40109ebbd9954f9ce930b4db0860e61e SRA:SRR5111189 https://www.encodeproject.org/files/ENCFF088UFA/@@download/ENCFF088UFA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released file validation error, antibody characterized with exemption mismatched file status ENCFF690LCG fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 1 ENCFF019KRR 3085773474 Michael Snyder, Stanford d74b0c57041f91d4d2301d9e3cfcfc09 SRA:SRR5111190 https://www.encodeproject.org/files/ENCFF690LCG/@@download/ENCFF690LCG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released file validation error, antibody characterized with exemption mismatched file status ENCFF019KRR fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 1 100 paired-ended 2 ENCFF690LCG 3191244303 Michael Snyder, Stanford d985f86ce016e794354843c6c885d1bc SRA:SRR5111190 https://www.encodeproject.org/files/ENCFF019KRR/@@download/ENCFF019KRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released file validation error, antibody characterized with exemption mismatched file status ENCFF918XGV fastq reads ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 1 100 paired-ended 2 ENCFF088UFA 3331736328 Michael Snyder, Stanford f457d4dcbdbc31d2914d1c0a46e8df7c SRA:SRR5111189 https://www.encodeproject.org/files/ENCFF918XGV/@@download/ENCFF918XGV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released file validation error, antibody characterized with exemption mismatched file status ENCFF746YDX bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF019KRR, ENCFF690LCG, ENCFF807MUK 6009581100 ENCODE Processing Pipeline 67554948fa0de34f25c2208e28a9be24 https://www.encodeproject.org/files/ENCFF746YDX/@@download/ENCFF746YDX.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF330CTW bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF088UFA, ENCFF807MUK, ENCFF918XGV 6243354059 ENCODE Processing Pipeline dd6ebafcaf524cc257a5f90f95b6c985 https://www.encodeproject.org/files/ENCFF330CTW/@@download/ENCFF330CTW.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF754LWC bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 1452813532 ENCODE Processing Pipeline 5fa0da9aafab9783c442c8c70aa5a6a2 https://www.encodeproject.org/files/ENCFF754LWC/@@download/ENCFF754LWC.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF498EIR bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF330CTW, ENCFF746YDX, ENCFF941TZZ 2448083247 ENCODE Processing Pipeline b33c9602977375344662680755df4d29 https://www.encodeproject.org/files/ENCFF498EIR/@@download/ENCFF498EIR.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF926DDP bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 1850026534 ENCODE Processing Pipeline 356ca910d4bbeb00de28e733a2802357 https://www.encodeproject.org/files/ENCFF926DDP/@@download/ENCFF926DDP.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF817ZDW bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 1424492096 ENCODE Processing Pipeline 55869d378b1dc175b6f0511cd3464297 https://www.encodeproject.org/files/ENCFF817ZDW/@@download/ENCFF817ZDW.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF816GZA bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 7055337 ENCODE Processing Pipeline 24bd8f967eba6f9dec0cbc4183746bcc https://www.encodeproject.org/files/ENCFF816GZA/@@download/ENCFF816GZA.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF991QKE bed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF432SFP, ENCFF637CIX, ENCFF816GZA 315561 ENCODE Processing Pipeline 0f90970b02d5a7404fcdb69263f4e5d7 https://www.encodeproject.org/files/ENCFF991QKE/@@download/ENCFF991QKE.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF303UTJ bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF330CTW, ENCFF746YDX, ENCFF941TZZ 2524002041 ENCODE Processing Pipeline 85043bf296759b50ef3dd56e143011a1 https://www.encodeproject.org/files/ENCFF303UTJ/@@download/ENCFF303UTJ.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF318KKI bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF816GZA 12440524 ENCODE Processing Pipeline fdb66b9cb05834a07791a0270f576f42 https://www.encodeproject.org/files/ENCFF318KKI/@@download/ENCFF318KKI.bigBed hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF355TXO bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 1905167700 ENCODE Processing Pipeline dad5a1f8c7c279e3cc48a945c003f2f1 https://www.encodeproject.org/files/ENCFF355TXO/@@download/ENCFF355TXO.bigWig hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF432SFP bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF287SKW, ENCFF330CTW, ENCFF746YDX, ENCFF941TZZ 7177504 ENCODE Processing Pipeline 65f6c3aba9694573c9d8cafb32d95669 https://www.encodeproject.org/files/ENCFF432SFP/@@download/ENCFF432SFP.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF610UFA bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF637CIX 12853343 ENCODE Processing Pipeline dc7dc1cffb2addf2b6ca8bffd7b845c2 https://www.encodeproject.org/files/ENCFF610UFA/@@download/ENCFF610UFA.bigBed hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF935HIG bed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF001TDO, ENCFF432SFP, ENCFF637CIX, ENCFF816GZA 401608 ENCODE Processing Pipeline 10e3149096e5eb728da6251a011656f6 https://www.encodeproject.org/files/ENCFF935HIG/@@download/ENCFF935HIG.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF383LBC bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF432SFP 12496691 ENCODE Processing Pipeline ad7f658a66638a301ae19e4e0ec0441b https://www.encodeproject.org/files/ENCFF383LBC/@@download/ENCFF383LBC.bigBed hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF247RBA bigBed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF887GJW 640107 ENCODE Processing Pipeline a65261bc66dadfb3529ca87a59e386de https://www.encodeproject.org/files/ENCFF247RBA/@@download/ENCFF247RBA.bigBed hg19 released file validation error, antibody characterized with exemption mismatched status, mismatched file status ENCFF637CIX bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 7177132 ENCODE Processing Pipeline b0429ae29455c952bff9b5a57d7585e6 https://www.encodeproject.org/files/ENCFF637CIX/@@download/ENCFF637CIX.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF732NVF bigBed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF417REY 771819 ENCODE Processing Pipeline bf1d9a65f25797e66680cd9a89719605 https://www.encodeproject.org/files/ENCFF732NVF/@@download/ENCFF732NVF.bigBed hg19 released file validation error, antibody characterized with exemption mismatched status, mismatched file status ENCFF189AGH bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF643CGH, ENCFF690LCG 6794233278 ENCODE Processing Pipeline 153d2fa72d8ac81e1c80a05f60658c2c https://www.encodeproject.org/files/ENCFF189AGH/@@download/ENCFF189AGH.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF186XNP bam unfiltered alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF643CGH, ENCFF918XGV 7041390023 ENCODE Processing Pipeline 6322f4d66c363ccc9d7d2978b778e7ec https://www.encodeproject.org/files/ENCFF186XNP/@@download/ENCFF186XNP.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF773BVT bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF643CGH, ENCFF690LCG 6025797328 ENCODE Processing Pipeline 6689330653f67ca3041501603fa19494 https://www.encodeproject.org/files/ENCFF773BVT/@@download/ENCFF773BVT.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF121WPI bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF643CGH, ENCFF918XGV 6253790320 ENCODE Processing Pipeline eb4e8fb55ca4c5c2136eb38f0b06902c https://www.encodeproject.org/files/ENCFF121WPI/@@download/ENCFF121WPI.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF807IZE bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF121WPI, ENCFF574BGV, ENCFF879YMO 1752893437 ENCODE Processing Pipeline 16c9df9ff5b1098e3c414d5445ce213e https://www.encodeproject.org/files/ENCFF807IZE/@@download/ENCFF807IZE.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF383OXH bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF773BVT 1419253384 ENCODE Processing Pipeline e83e9a2b5b8ef0b8339d80c89e5abd7f https://www.encodeproject.org/files/ENCFF383OXH/@@download/ENCFF383OXH.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF702FLW bigWig signal p-value ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121WPI, ENCFF574BGV, ENCFF773BVT, ENCFF879YMO 2442276350 ENCODE Processing Pipeline d77a0e846df06320f3341e44b747cbdb https://www.encodeproject.org/files/ENCFF702FLW/@@download/ENCFF702FLW.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF716RRR bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF121WPI, ENCFF574BGV, ENCFF879YMO 1899034742 ENCODE Processing Pipeline f405269ad3dc45890647eab7bfb81622 https://www.encodeproject.org/files/ENCFF716RRR/@@download/ENCFF716RRR.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF499CNJ bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF773BVT 1384439724 ENCODE Processing Pipeline 6f483748958fe92183a99f878caf8e07 https://www.encodeproject.org/files/ENCFF499CNJ/@@download/ENCFF499CNJ.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF928WEU bigWig fold change over control ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121WPI, ENCFF574BGV, ENCFF773BVT, ENCFF879YMO 2520307104 ENCODE Processing Pipeline 6ec76aa14d9f0bed12cec84571b9a0d0 https://www.encodeproject.org/files/ENCFF928WEU/@@download/ENCFF928WEU.bigWig GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF451PUV bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF121WPI, ENCFF574BGV, ENCFF879YMO 7072204 ENCODE Processing Pipeline ebe14b71e6ccc1700be43fadbf8e65b3 https://www.encodeproject.org/files/ENCFF451PUV/@@download/ENCFF451PUV.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF974RFL bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF574BGV, ENCFF773BVT 7077178 ENCODE Processing Pipeline 33f5fe0ea6a4f2cf60aeb022261d85f9 https://www.encodeproject.org/files/ENCFF974RFL/@@download/ENCFF974RFL.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF981RMT bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF121WPI, ENCFF574BGV, ENCFF773BVT, ENCFF879YMO 7187143 ENCODE Processing Pipeline fef0091e9e4b01d5c630ea63193f7047 https://www.encodeproject.org/files/ENCFF981RMT/@@download/ENCFF981RMT.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF148EMM bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF451PUV 12493764 ENCODE Processing Pipeline 95e027990e39f1253d36e1b8ed0679c1 https://www.encodeproject.org/files/ENCFF148EMM/@@download/ENCFF148EMM.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF860VYR bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF974RFL 12801368 ENCODE Processing Pipeline 40f699b01d68822e73776ce285a9f1cb https://www.encodeproject.org/files/ENCFF860VYR/@@download/ENCFF860VYR.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF311SDK bigBed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF981RMT 12520280 ENCODE Processing Pipeline a7391a24895cdd2878c29515295cdfeb https://www.encodeproject.org/files/ENCFF311SDK/@@download/ENCFF311SDK.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF143KGD bed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF451PUV, ENCFF974RFL, ENCFF981RMT 317766 ENCODE Processing Pipeline d8d92a68fc2493a0a1524d4b12d51af0 https://www.encodeproject.org/files/ENCFF143KGD/@@download/ENCFF143KGD.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF272HGN bigBed narrowPeak conservative idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF143KGD 645075 ENCODE Processing Pipeline 52aa05800753eda9c9d24b362ac5caa4 https://www.encodeproject.org/files/ENCFF272HGN/@@download/ENCFF272HGN.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF442WRJ bed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF419RSJ, ENCFF451PUV, ENCFF974RFL, ENCFF981RMT 411361 ENCODE Processing Pipeline 4935ad50f0fd9980285f57471ae6fca5 https://www.encodeproject.org/files/ENCFF442WRJ/@@download/ENCFF442WRJ.bed.gz GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF392KBC bigBed narrowPeak optimal idr thresholded peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1, 2 ENCFF442WRJ 787214 ENCODE Processing Pipeline 00d10a8f5b1493e8df61e26d1d004d43 https://www.encodeproject.org/files/ENCFF392KBC/@@download/ENCFF392KBC.bigBed GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF619CUO fastq reads ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF204KUD 2240041984 Michael Snyder, Stanford 61e581ec785acfd1f5e9f7ef8c985c3c SRA:SRR5111317 https://www.encodeproject.org/files/ENCFF619CUO/@@download/ENCFF619CUO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF104INT fastq reads ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF832UNH 1505195651 Michael Snyder, Stanford 251a9a2cd165fafd0eb6c3d44b2909f5 SRA:SRR5111316 https://www.encodeproject.org/files/ENCFF104INT/@@download/ENCFF104INT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF204KUD fastq reads ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF619CUO 2290647762 Michael Snyder, Stanford a25206d626070f6c4598215122533eba SRA:SRR5111317 https://www.encodeproject.org/files/ENCFF204KUD/@@download/ENCFF204KUD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF832UNH fastq reads ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF104INT 1551123158 Michael Snyder, Stanford 09debf60e0945987f79f04efe837cb74 SRA:SRR5111316 https://www.encodeproject.org/files/ENCFF832UNH/@@download/ENCFF832UNH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF335XVH bam unfiltered alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF104INT, ENCFF807MUK, ENCFF832UNH 3485318482 ENCODE Processing Pipeline a662a29a86a07c2c8e9727a98508b687 https://www.encodeproject.org/files/ENCFF335XVH/@@download/ENCFF335XVH.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF914NNT bam unfiltered alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF104INT, ENCFF643CGH, ENCFF832UNH 3489742729 ENCODE Processing Pipeline f35b86488aa68696208456fe38778083 https://www.encodeproject.org/files/ENCFF914NNT/@@download/ENCFF914NNT.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF368MMZ bam unfiltered alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204KUD, ENCFF619CUO, ENCFF807MUK 5045172603 ENCODE Processing Pipeline dbef80e9d77ec596585741fe7164d3ae https://www.encodeproject.org/files/ENCFF368MMZ/@@download/ENCFF368MMZ.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF563SXZ bam unfiltered alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204KUD, ENCFF619CUO, ENCFF643CGH 5052419980 ENCODE Processing Pipeline 3241600a961b29503e7316c0c13f9f4d https://www.encodeproject.org/files/ENCFF563SXZ/@@download/ENCFF563SXZ.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF828PXU bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF104INT, ENCFF807MUK, ENCFF832UNH 2812596587 ENCODE Processing Pipeline c2445defae6d3f0a4e08eba2bf456b31 https://www.encodeproject.org/files/ENCFF828PXU/@@download/ENCFF828PXU.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF332IHG bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF104INT, ENCFF643CGH, ENCFF832UNH 2814608018 ENCODE Processing Pipeline f3e0e5f7cd7568c62f2f42c9582c7c05 https://www.encodeproject.org/files/ENCFF332IHG/@@download/ENCFF332IHG.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF329FLI bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204KUD, ENCFF619CUO, ENCFF807MUK 4184929012 ENCODE Processing Pipeline 138f38e738412197dbe460dcd4aefa33 https://www.encodeproject.org/files/ENCFF329FLI/@@download/ENCFF329FLI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF210NGO bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204KUD, ENCFF619CUO, ENCFF643CGH 4187753195 ENCODE Processing Pipeline 7472bd8d27a41bc3342750da3bc9f212 https://www.encodeproject.org/files/ENCFF210NGO/@@download/ENCFF210NGO.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF018JLV bigWig signal p-value ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF828PXU 1075438522 ENCODE Processing Pipeline 5836179fc3a2981cc96b6e1a53c01f0e https://www.encodeproject.org/files/ENCFF018JLV/@@download/ENCFF018JLV.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF895GXB bigWig signal p-value ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF329FLI 1367117270 ENCODE Processing Pipeline 92751d659d652a9d4d456ed55c45c64b https://www.encodeproject.org/files/ENCFF895GXB/@@download/ENCFF895GXB.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF353DEA bigWig signal p-value ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF329FLI, ENCFF828PXU 1352089142 ENCODE Processing Pipeline 9307b2fef7a43686364c21584ece10d8 https://www.encodeproject.org/files/ENCFF353DEA/@@download/ENCFF353DEA.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF913OQJ bigWig fold change over control ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF828PXU 1039496579 ENCODE Processing Pipeline bdc248ce2b42e0f2229749d70c1db805 https://www.encodeproject.org/files/ENCFF913OQJ/@@download/ENCFF913OQJ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF926QLD bigWig fold change over control ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF329FLI 1320855161 ENCODE Processing Pipeline 349ffebf40e116377c59f8f89b0a578a https://www.encodeproject.org/files/ENCFF926QLD/@@download/ENCFF926QLD.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF026UAU bigWig fold change over control ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF329FLI, ENCFF828PXU 1709678051 ENCODE Processing Pipeline 6fae35865af224996e8cd62fa3369d5f https://www.encodeproject.org/files/ENCFF026UAU/@@download/ENCFF026UAU.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF453AYJ bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF329FLI 6315860 ENCODE Processing Pipeline e99e0c7ca8422a3b0a735556eac55707 https://www.encodeproject.org/files/ENCFF453AYJ/@@download/ENCFF453AYJ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF823KCQ bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF828PXU 5963295 ENCODE Processing Pipeline 27331c2e2c00868ceb23a273c3bf3954 https://www.encodeproject.org/files/ENCFF823KCQ/@@download/ENCFF823KCQ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF820PMN bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF329FLI, ENCFF828PXU 6800586 ENCODE Processing Pipeline a32f898f33708092bb5ff2312ca4fd36 https://www.encodeproject.org/files/ENCFF820PMN/@@download/ENCFF820PMN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF452ZAU bigBed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF823KCQ 11350466 ENCODE Processing Pipeline fb081f2bcc73a29efe6527c59aa26d97 https://www.encodeproject.org/files/ENCFF452ZAU/@@download/ENCFF452ZAU.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF130DTW bigBed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF453AYJ 11346837 ENCODE Processing Pipeline 57521ff723272e005fa5e05e86e3e2db https://www.encodeproject.org/files/ENCFF130DTW/@@download/ENCFF130DTW.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF562PHN bigBed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF820PMN 11050722 ENCODE Processing Pipeline 9a08f8b3d1371a578930204a3b42c45e https://www.encodeproject.org/files/ENCFF562PHN/@@download/ENCFF562PHN.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF526BBH bed narrowPeak conservative idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF453AYJ, ENCFF820PMN, ENCFF823KCQ 24171 ENCODE Processing Pipeline 5c5d8e129bd812682a006afe2cee37f8 https://www.encodeproject.org/files/ENCFF526BBH/@@download/ENCFF526BBH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF565PHP bigBed narrowPeak conservative idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF526BBH 95074 ENCODE Processing Pipeline 95bf935a9a3758403a03394a2f3e15a6 https://www.encodeproject.org/files/ENCFF565PHP/@@download/ENCFF565PHP.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF559OMC bed narrowPeak optimal idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF453AYJ, ENCFF820PMN, ENCFF823KCQ 34938 ENCODE Processing Pipeline a5f8a4448413a15795d3d783fe3e7840 https://www.encodeproject.org/files/ENCFF559OMC/@@download/ENCFF559OMC.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF667FUC bigBed narrowPeak optimal idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF559OMC 112639 ENCODE Processing Pipeline d51fa9d04211e499712a54d00e08fed1 https://www.encodeproject.org/files/ENCFF667FUC/@@download/ENCFF667FUC.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF853URA bigWig signal p-value ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF210NGO 1402659273 ENCODE Processing Pipeline e38144709baf4c190062914f34887182 https://www.encodeproject.org/files/ENCFF853URA/@@download/ENCFF853URA.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF312LNF bigWig signal p-value ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF210NGO, ENCFF332IHG 1395774404 ENCODE Processing Pipeline 5f51f2ab357675b4976f9d0e27b5688e https://www.encodeproject.org/files/ENCFF312LNF/@@download/ENCFF312LNF.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF919FLT bigWig signal p-value ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF332IHG 1103134338 ENCODE Processing Pipeline 2e58c8477a4d1fb956384ba87aa1d83c https://www.encodeproject.org/files/ENCFF919FLT/@@download/ENCFF919FLT.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF556QOU bigWig fold change over control ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF332IHG 1063813194 ENCODE Processing Pipeline 7505caab9eb5c9200e3ef67c16f15ab7 https://www.encodeproject.org/files/ENCFF556QOU/@@download/ENCFF556QOU.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF042ZDE bigWig fold change over control ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF210NGO 1308864652 ENCODE Processing Pipeline 8cf4a305c5b9e6987f51f0e516208c90 https://www.encodeproject.org/files/ENCFF042ZDE/@@download/ENCFF042ZDE.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF979ADD bigWig fold change over control ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF210NGO, ENCFF332IHG 1721431450 ENCODE Processing Pipeline a051ca6083a1858868ccc2fb3ee79409 https://www.encodeproject.org/files/ENCFF979ADD/@@download/ENCFF979ADD.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF329BDE bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF210NGO, ENCFF332IHG 6689429 ENCODE Processing Pipeline 96b21a9c4f16f32f2b4160edd1106724 https://www.encodeproject.org/files/ENCFF329BDE/@@download/ENCFF329BDE.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF170SBN bigBed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF716YOI 11350294 ENCODE Processing Pipeline cbb6a344b3c022b0d8987dd76e478064 https://www.encodeproject.org/files/ENCFF170SBN/@@download/ENCFF170SBN.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF944YIM bigBed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF702CJP 11359305 ENCODE Processing Pipeline cb663d2c800e584f17e6ac56d70875c9 https://www.encodeproject.org/files/ENCFF944YIM/@@download/ENCFF944YIM.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF828CGK bigBed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF329BDE 11059813 ENCODE Processing Pipeline c8604c3d2a4c2bfcd1eb9838f968d9cf https://www.encodeproject.org/files/ENCFF828CGK/@@download/ENCFF828CGK.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF716YOI bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF332IHG 5828415 ENCODE Processing Pipeline eec58a82e94e090c31961b07f0c40be7 https://www.encodeproject.org/files/ENCFF716YOI/@@download/ENCFF716YOI.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF702CJP bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF210NGO 5974628 ENCODE Processing Pipeline 05f0921718ac73deeaba1db541ba8bf8 https://www.encodeproject.org/files/ENCFF702CJP/@@download/ENCFF702CJP.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF083BWU bigBed narrowPeak conservative idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF229LRU 97736 ENCODE Processing Pipeline 65a70054232d4ce5eae9a97a756c4969 https://www.encodeproject.org/files/ENCFF083BWU/@@download/ENCFF083BWU.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF229LRU bed narrowPeak conservative idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF329BDE, ENCFF419RSJ, ENCFF702CJP, ENCFF716YOI 24859 ENCODE Processing Pipeline 7700e86c50b24fb93ff807f33dcbb8e6 https://www.encodeproject.org/files/ENCFF229LRU/@@download/ENCFF229LRU.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF970WTM bigBed narrowPeak optimal idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF639RPS 118510 ENCODE Processing Pipeline 9a7f7c7a60d78e8e6ebc401c168bc870 https://www.encodeproject.org/files/ENCFF970WTM/@@download/ENCFF970WTM.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF639RPS bed narrowPeak optimal idr thresholded peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF329BDE, ENCFF419RSJ, ENCFF702CJP, ENCFF716YOI 37708 ENCODE Processing Pipeline 7f8e372ebf675cb431c7c6a57d475ff7 https://www.encodeproject.org/files/ENCFF639RPS/@@download/ENCFF639RPS.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF413PLS fastq reads ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF972SBT 2645581138 Michael Snyder, Stanford 48382a031e2c9b55a6a711188f8ca9dc SRA:SRR5112341 https://www.encodeproject.org/files/ENCFF413PLS/@@download/ENCFF413PLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF809WZP fastq reads ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF231IQH 2571986211 Michael Snyder, Stanford 31875ea50ee9bfd01c2b5e00a84e8fc8 SRA:SRR5112340 https://www.encodeproject.org/files/ENCFF809WZP/@@download/ENCFF809WZP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF231IQH fastq reads ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF809WZP 2596951812 Michael Snyder, Stanford 38ac4a291546161bb56a798dcd69f607 SRA:SRR5112340 https://www.encodeproject.org/files/ENCFF231IQH/@@download/ENCFF231IQH.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF972SBT fastq reads ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF413PLS 2670158993 Michael Snyder, Stanford 20fdaa815929652cf5c400d03a51be8d SRA:SRR5112341 https://www.encodeproject.org/files/ENCFF972SBT/@@download/ENCFF972SBT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF736FEU bam unfiltered alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF413PLS, ENCFF807MUK, ENCFF972SBT 5789736526 ENCODE Processing Pipeline 34de77546c99ae8d06bc88fb19de933c https://www.encodeproject.org/files/ENCFF736FEU/@@download/ENCFF736FEU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF818PEY bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF413PLS, ENCFF807MUK, ENCFF972SBT 4947858633 ENCODE Processing Pipeline 2d38fba2b3dde73fa861d59a617e70d5 https://www.encodeproject.org/files/ENCFF818PEY/@@download/ENCFF818PEY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF504QOK bam unfiltered alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF231IQH, ENCFF807MUK, ENCFF809WZP 5662608802 ENCODE Processing Pipeline 29ec32422d8d8489ec94a1c2164c5224 https://www.encodeproject.org/files/ENCFF504QOK/@@download/ENCFF504QOK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF827RUT bam unfiltered alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF413PLS, ENCFF643CGH, ENCFF972SBT 5794717627 ENCODE Processing Pipeline f68fdd620bc4e054425cfb79051e1d5e https://www.encodeproject.org/files/ENCFF827RUT/@@download/ENCFF827RUT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF120ZJP bam unfiltered alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF231IQH, ENCFF643CGH, ENCFF809WZP 5667879474 ENCODE Processing Pipeline 9c4883a3b138f9f33ea13540ed06f505 https://www.encodeproject.org/files/ENCFF120ZJP/@@download/ENCFF120ZJP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF847GYW bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF231IQH, ENCFF807MUK, ENCFF809WZP 4858410657 ENCODE Processing Pipeline 17eb018ebb4d2cd3a9d9826ae1b1daf2 https://www.encodeproject.org/files/ENCFF847GYW/@@download/ENCFF847GYW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF151ECV bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF413PLS, ENCFF643CGH, ENCFF972SBT 4948725912 ENCODE Processing Pipeline ce9040dc1c61bb2fa511e4721a9aea96 https://www.encodeproject.org/files/ENCFF151ECV/@@download/ENCFF151ECV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF259ZGN bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF231IQH, ENCFF643CGH, ENCFF809WZP 4859696885 ENCODE Processing Pipeline 279d52bfdc82695d03b065456e7afb0f https://www.encodeproject.org/files/ENCFF259ZGN/@@download/ENCFF259ZGN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF277HBR bigWig signal p-value ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF847GYW 1424416552 ENCODE Processing Pipeline 7e1678b21b99bccb4098409c7ad664fb https://www.encodeproject.org/files/ENCFF277HBR/@@download/ENCFF277HBR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF849OCE bigWig signal p-value ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF818PEY 1424009518 ENCODE Processing Pipeline a33a6370b7bb219af9f48133c7277f99 https://www.encodeproject.org/files/ENCFF849OCE/@@download/ENCFF849OCE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF559ISX bigWig signal p-value ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF818PEY, ENCFF847GYW 1962383640 ENCODE Processing Pipeline 3f4bddca7c7280452f519e3bc5d1fe3b https://www.encodeproject.org/files/ENCFF559ISX/@@download/ENCFF559ISX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF409YNS bigWig fold change over control ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF847GYW 1401115784 ENCODE Processing Pipeline f4af91731535ad759ae1525f180a2527 https://www.encodeproject.org/files/ENCFF409YNS/@@download/ENCFF409YNS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF422VVR bigWig fold change over control ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF818PEY 1387990109 ENCODE Processing Pipeline f7297d5f66c106eab6ced516537ba5d2 https://www.encodeproject.org/files/ENCFF422VVR/@@download/ENCFF422VVR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF095FYI bigWig fold change over control ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF818PEY, ENCFF847GYW 1971364847 ENCODE Processing Pipeline e6301324d96478c414446abe6fc32235 https://www.encodeproject.org/files/ENCFF095FYI/@@download/ENCFF095FYI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF946RUB bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF847GYW 7014242 ENCODE Processing Pipeline 4ffc08cd494a32e0f971ade4c7c6c08f https://www.encodeproject.org/files/ENCFF946RUB/@@download/ENCFF946RUB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF480YPV bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF818PEY 7038241 ENCODE Processing Pipeline de706cd1cdfa0a33ed26bb5236a6c92e https://www.encodeproject.org/files/ENCFF480YPV/@@download/ENCFF480YPV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF504DVB bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF818PEY, ENCFF847GYW 7181483 ENCODE Processing Pipeline dc78989018ecf65a017942f538242f65 https://www.encodeproject.org/files/ENCFF504DVB/@@download/ENCFF504DVB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF735OKL bigBed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF946RUB 13099398 ENCODE Processing Pipeline 1f7f586d2e8bb7a530e07d076b1b95b1 https://www.encodeproject.org/files/ENCFF735OKL/@@download/ENCFF735OKL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF575XCU bigBed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF480YPV 13003762 ENCODE Processing Pipeline b5ef8329a06e59f812a2d1b346f6e01e https://www.encodeproject.org/files/ENCFF575XCU/@@download/ENCFF575XCU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF973MRE bed narrowPeak conservative idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF480YPV, ENCFF504DVB, ENCFF946RUB 711203 ENCODE Processing Pipeline 252ac9478ce8819229adec5c38b3b274 https://www.encodeproject.org/files/ENCFF973MRE/@@download/ENCFF973MRE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF553XZU bigBed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF504DVB 12862842 ENCODE Processing Pipeline e02e8206bb1cf4af067c59cd5f0ed18e https://www.encodeproject.org/files/ENCFF553XZU/@@download/ENCFF553XZU.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF338QWU bed narrowPeak optimal idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF480YPV, ENCFF504DVB, ENCFF946RUB 735746 ENCODE Processing Pipeline 72d478c8b0e61a5f2f121643a21a699f https://www.encodeproject.org/files/ENCFF338QWU/@@download/ENCFF338QWU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF431DOD bigBed narrowPeak conservative idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF973MRE 1567429 ENCODE Processing Pipeline f756757b00cc47f0d2b3d5c581aef2db https://www.encodeproject.org/files/ENCFF431DOD/@@download/ENCFF431DOD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF029KBI bigBed narrowPeak optimal idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF338QWU 1614783 ENCODE Processing Pipeline bc38b49cda4e0cac481cb05bd50022ae https://www.encodeproject.org/files/ENCFF029KBI/@@download/ENCFF029KBI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF841EDS bigWig signal p-value ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF259ZGN 1262579957 ENCODE Processing Pipeline a8ec506119c9d6a4d6e051f57cc277c4 https://www.encodeproject.org/files/ENCFF841EDS/@@download/ENCFF841EDS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF158SKH bigWig signal p-value ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF151ECV 1275552243 ENCODE Processing Pipeline 03c04425b4036cd166d10914ffaa6aaf https://www.encodeproject.org/files/ENCFF158SKH/@@download/ENCFF158SKH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF676CRX bigWig signal p-value ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF151ECV, ENCFF259ZGN 1963457852 ENCODE Processing Pipeline 394e09ddc0edafdde8c4ec532ad67f87 https://www.encodeproject.org/files/ENCFF676CRX/@@download/ENCFF676CRX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF645VXL bigWig fold change over control ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF259ZGN 1422924485 ENCODE Processing Pipeline bd233423696b1f98293eec6498c59d1a https://www.encodeproject.org/files/ENCFF645VXL/@@download/ENCFF645VXL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF615ZAU bigWig fold change over control ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF151ECV 1410740061 ENCODE Processing Pipeline 1992fbafd373a5a466054da103396efb https://www.encodeproject.org/files/ENCFF615ZAU/@@download/ENCFF615ZAU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF368RZP bigWig fold change over control ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF151ECV, ENCFF259ZGN 1981064662 ENCODE Processing Pipeline af9503b9032baf1c88481b755ef7edcc https://www.encodeproject.org/files/ENCFF368RZP/@@download/ENCFF368RZP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF137ZRA bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF259ZGN 6972261 ENCODE Processing Pipeline a22093e742bf6fe58c1ff6fb710e4115 https://www.encodeproject.org/files/ENCFF137ZRA/@@download/ENCFF137ZRA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF033BDD bed narrowPeak conservative idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF049ZSZ, ENCFF137ZRA, ENCFF250IMK, ENCFF419RSJ 720841 ENCODE Processing Pipeline fa11ce1b775b2aa3ec7a086646b9bf2b https://www.encodeproject.org/files/ENCFF033BDD/@@download/ENCFF033BDD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF250IMK bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF151ECV 7065791 ENCODE Processing Pipeline 800876f8ba07163b59c18e1d87ea4c5d https://www.encodeproject.org/files/ENCFF250IMK/@@download/ENCFF250IMK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF301ZKI bigBed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF049ZSZ 12932701 ENCODE Processing Pipeline 1d8196ed8b85493819ceadb9b381aacd https://www.encodeproject.org/files/ENCFF301ZKI/@@download/ENCFF301ZKI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF577CWS bigBed narrowPeak optimal idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF768TFU 1646764 ENCODE Processing Pipeline 64072bed77b7c0ebdde88fe36d1ad12d https://www.encodeproject.org/files/ENCFF577CWS/@@download/ENCFF577CWS.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF049ZSZ bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF151ECV, ENCFF259ZGN 7224141 ENCODE Processing Pipeline 631f1c13ab69d66407038c3abce29dc2 https://www.encodeproject.org/files/ENCFF049ZSZ/@@download/ENCFF049ZSZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF201QSR bigBed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF137ZRA 13134115 ENCODE Processing Pipeline 8b9f43ba584ce50201dd19d8d8b41d35 https://www.encodeproject.org/files/ENCFF201QSR/@@download/ENCFF201QSR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF768TFU bed narrowPeak optimal idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF049ZSZ, ENCFF137ZRA, ENCFF250IMK, ENCFF419RSJ 755153 ENCODE Processing Pipeline bd16c1265812f6619f6c2a9c4c7b3727 https://www.encodeproject.org/files/ENCFF768TFU/@@download/ENCFF768TFU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF199ULE bigBed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF250IMK 13102589 ENCODE Processing Pipeline 5191f674daea613ce042b4530cdc665d https://www.encodeproject.org/files/ENCFF199ULE/@@download/ENCFF199ULE.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF594SIL bigBed narrowPeak conservative idr thresholded peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF033BDD 1584387 ENCODE Processing Pipeline afe256594ceaffaf7945088f979da236 https://www.encodeproject.org/files/ENCFF594SIL/@@download/ENCFF594SIL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF271YPD fastq reads ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF456PAU 3571917417 Michael Snyder, Stanford 68c620f288d57588e91da9e0f5f60cb6 https://www.encodeproject.org/files/ENCFF271YPD/@@download/ENCFF271YPD.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF456PAU fastq reads ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF271YPD 3718247071 Michael Snyder, Stanford 71b221e867b5822db832d7ba7a8fd503 https://www.encodeproject.org/files/ENCFF456PAU/@@download/ENCFF456PAU.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF107GHX bam unfiltered alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF271YPD, ENCFF456PAU, ENCFF807MUK 6739158178 ENCODE Processing Pipeline 0277afa9c395f02ad0d76bdf01a08190 https://www.encodeproject.org/files/ENCFF107GHX/@@download/ENCFF107GHX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF027GIB bam unfiltered alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF271YPD, ENCFF456PAU, ENCFF643CGH 6745996768 ENCODE Processing Pipeline 3e4899be9f571ee28fb417ca223243c7 https://www.encodeproject.org/files/ENCFF027GIB/@@download/ENCFF027GIB.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF431LTO bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF271YPD, ENCFF456PAU, ENCFF643CGH 5174099343 ENCODE Processing Pipeline c5da8f36fcc4444ec381d5149040e90d https://www.encodeproject.org/files/ENCFF431LTO/@@download/ENCFF431LTO.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF014SGL bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF271YPD, ENCFF456PAU, ENCFF807MUK 5171581198 ENCODE Processing Pipeline 0f84bd10c4a3cc82ba46fbd641f46ade https://www.encodeproject.org/files/ENCFF014SGL/@@download/ENCFF014SGL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF419YNF bigWig signal p-value ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF431LTO, ENCFF810LLR 1710402244 ENCODE Processing Pipeline 0bc986b2db90c3602cb9826dd0d888d1 https://www.encodeproject.org/files/ENCFF419YNF/@@download/ENCFF419YNF.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF358KJF bigBed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF269RYL 13075865 ENCODE Processing Pipeline 6a14c3b4a7cf86fe42ea2997e5cc714b https://www.encodeproject.org/files/ENCFF358KJF/@@download/ENCFF358KJF.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF201MWD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF419RSJ, ENCFF646KAN 652851 ENCODE Processing Pipeline 4d496fe76ec2a66a91e0ef5975dda88f https://www.encodeproject.org/files/ENCFF201MWD/@@download/ENCFF201MWD.bed.gz GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF626DNK bigWig fold change over control ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF014SGL, ENCFF182WHU 1828023313 ENCODE Processing Pipeline c7cda89308162c4a701264877626b571 https://www.encodeproject.org/files/ENCFF626DNK/@@download/ENCFF626DNK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF414FRL bigWig signal p-value ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF014SGL, ENCFF182WHU 1641931334 ENCODE Processing Pipeline f12afc2d1a31fe2c4cf6e2ac0239e602 https://www.encodeproject.org/files/ENCFF414FRL/@@download/ENCFF414FRL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF752LHF bigWig fold change over control ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF431LTO, ENCFF810LLR 1839178351 ENCODE Processing Pipeline 4cdb045fd01caad0c03c227e55e42583 https://www.encodeproject.org/files/ENCFF752LHF/@@download/ENCFF752LHF.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF646KAN bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF431LTO, ENCFF810LLR 7211043 ENCODE Processing Pipeline 649f753c7878fc7227504b1b4f4513f6 https://www.encodeproject.org/files/ENCFF646KAN/@@download/ENCFF646KAN.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF790GNI bigBed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF646KAN 13038247 ENCODE Processing Pipeline e4cd67bee3f7119fad6136ee633e4020 https://www.encodeproject.org/files/ENCFF790GNI/@@download/ENCFF790GNI.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF593RQD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF201MWD 1237676 ENCODE Processing Pipeline 71684444b1a644fb70706e7fea030364 https://www.encodeproject.org/files/ENCFF593RQD/@@download/ENCFF593RQD.bigBed GRCh38 archived mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF723NCL fastq reads ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF031VYK 3337831258 Michael Snyder, Stanford de747648a00b75ba9bcc3b2d92a6429b https://www.encodeproject.org/files/ENCFF723NCL/@@download/ENCFF723NCL.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF031VYK fastq reads ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF723NCL 3018903011 Michael Snyder, Stanford ed85c91c78c710d0859f6c851c2a3d68 https://www.encodeproject.org/files/ENCFF031VYK/@@download/ENCFF031VYK.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF504NVE bam unfiltered alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF031VYK, ENCFF723NCL, ENCFF807MUK 5904774103 ENCODE Processing Pipeline 84b740737ef96d35a74693a91bfa11a6 https://www.encodeproject.org/files/ENCFF504NVE/@@download/ENCFF504NVE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF332OVN bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF031VYK, ENCFF723NCL, ENCFF807MUK 4700745123 ENCODE Processing Pipeline e8542c35dc806823185369a1e8a8d710 https://www.encodeproject.org/files/ENCFF332OVN/@@download/ENCFF332OVN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF876FOW bam unfiltered alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF031VYK, ENCFF643CGH, ENCFF723NCL 5914167199 ENCODE Processing Pipeline 3eb9e8cb9a88d073a35cf20f06f00328 https://www.encodeproject.org/files/ENCFF876FOW/@@download/ENCFF876FOW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF634VOX bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF031VYK, ENCFF643CGH, ENCFF723NCL 4700789757 ENCODE Processing Pipeline 579f54b7c66d8af6b93f60e16f34b2fe https://www.encodeproject.org/files/ENCFF634VOX/@@download/ENCFF634VOX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF269RYL bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF014SGL, ENCFF182WHU 7251371 ENCODE Processing Pipeline ebc9d60199db8c009eb5b490bac21b09 https://www.encodeproject.org/files/ENCFF269RYL/@@download/ENCFF269RYL.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF413EHT bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF014SGL, ENCFF182WHU, ENCFF332OVN 7325551 ENCODE Processing Pipeline 1f7bc4ee6eff6069d77868393a896a02 https://www.encodeproject.org/files/ENCFF413EHT/@@download/ENCFF413EHT.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF127GCV bigWig fold change over control ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF431LTO, ENCFF634VOX, ENCFF810LLR 2415172363 ENCODE Processing Pipeline 1dc8492bc2730d7b1e3bcdefe9598e57 https://www.encodeproject.org/files/ENCFF127GCV/@@download/ENCFF127GCV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF887IHR bigWig signal p-value ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF634VOX, ENCFF810LLR 1665047480 ENCODE Processing Pipeline 5de4c2d208d3251354d0acf20d2357f8 https://www.encodeproject.org/files/ENCFF887IHR/@@download/ENCFF887IHR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF159RSM bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF634VOX, ENCFF810LLR 7005883 ENCODE Processing Pipeline df298d239e82b16b3f65eabaf9a3d95e https://www.encodeproject.org/files/ENCFF159RSM/@@download/ENCFF159RSM.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF304OQI bigWig fold change over control ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF182WHU, ENCFF332OVN 1689568852 ENCODE Processing Pipeline 63df25c8fce24248889b7e0f23f37ded https://www.encodeproject.org/files/ENCFF304OQI/@@download/ENCFF304OQI.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF075WGX bigWig fold change over control ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF634VOX, ENCFF810LLR 1689246633 ENCODE Processing Pipeline 50fce2cb8f00c97e3f761a5143219223 https://www.encodeproject.org/files/ENCFF075WGX/@@download/ENCFF075WGX.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF699WXF bed narrowPeak optimal idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF269RYL, ENCFF413EHT, ENCFF947TJN 722459 ENCODE Processing Pipeline 2f6121f1ed8a7ad4d2b643597ec02f37 https://www.encodeproject.org/files/ENCFF699WXF/@@download/ENCFF699WXF.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF756PBC bigBed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF159RSM 13409044 ENCODE Processing Pipeline 436d80e0c8e005b3347ccdb391d1bd1a https://www.encodeproject.org/files/ENCFF756PBC/@@download/ENCFF756PBC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF643ALW bigWig fold change over control ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF014SGL, ENCFF182WHU, ENCFF332OVN 2414374710 ENCODE Processing Pipeline 9947868b85751a1b81b382483574c06c https://www.encodeproject.org/files/ENCFF643ALW/@@download/ENCFF643ALW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF753OYI bigBed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF413EHT 13173926 ENCODE Processing Pipeline 0f05b53f05c5020b9c75c9f05a8aa8f7 https://www.encodeproject.org/files/ENCFF753OYI/@@download/ENCFF753OYI.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF579SRN bed narrowPeak conservative idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF269RYL, ENCFF413EHT, ENCFF947TJN 551998 ENCODE Processing Pipeline 9607aaf7af5e582e2ddc37e01a449102 https://www.encodeproject.org/files/ENCFF579SRN/@@download/ENCFF579SRN.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF044QVM bigBed narrowPeak optimal idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF699WXF 1333769 ENCODE Processing Pipeline e8cbc0507646020010e84075ba737f0f https://www.encodeproject.org/files/ENCFF044QVM/@@download/ENCFF044QVM.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF382WGQ bigWig signal p-value ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF182WHU, ENCFF332OVN 1498850245 ENCODE Processing Pipeline 676887a53da5f5658ccf891ce3e3d16f https://www.encodeproject.org/files/ENCFF382WGQ/@@download/ENCFF382WGQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF681MQQ bigWig signal p-value ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF014SGL, ENCFF182WHU, ENCFF332OVN 1942386368 ENCODE Processing Pipeline e04a7288efe6d9576e528aa40f8c3e93 https://www.encodeproject.org/files/ENCFF681MQQ/@@download/ENCFF681MQQ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF939ITT bigWig signal p-value ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF431LTO, ENCFF634VOX, ENCFF810LLR 1944402799 ENCODE Processing Pipeline 4094c8067847429468c491b688fb7ca2 https://www.encodeproject.org/files/ENCFF939ITT/@@download/ENCFF939ITT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF947TJN bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF182WHU, ENCFF332OVN 7005891 ENCODE Processing Pipeline 9c7ba6a7b72a87f37d11a6f3e597d365 https://www.encodeproject.org/files/ENCFF947TJN/@@download/ENCFF947TJN.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF372YXK bigBed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF947TJN 13402106 ENCODE Processing Pipeline 557f752a63ee193d9233972afd4c38d7 https://www.encodeproject.org/files/ENCFF372YXK/@@download/ENCFF372YXK.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF563JWG bigBed narrowPeak conservative idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF579SRN 1076586 ENCODE Processing Pipeline a9ee9c5110e45c9c3d0517f4f896b84e https://www.encodeproject.org/files/ENCFF563JWG/@@download/ENCFF563JWG.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF613WKG bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF431LTO, ENCFF634VOX, ENCFF810LLR 7340148 ENCODE Processing Pipeline 049ff8462215837405e58ee458b00707 https://www.encodeproject.org/files/ENCFF613WKG/@@download/ENCFF613WKG.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF440BSA bigBed narrowPeak optimal idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF824YMX 1349888 ENCODE Processing Pipeline 7b6508f7051a9f9bccce5ae306cdcdf5 https://www.encodeproject.org/files/ENCFF440BSA/@@download/ENCFF440BSA.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF164ASR bigBed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF613WKG 13196767 ENCODE Processing Pipeline edb4b2008ed1c2b7b74dcf517893af2c https://www.encodeproject.org/files/ENCFF164ASR/@@download/ENCFF164ASR.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF919CRG bed narrowPeak conservative idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF159RSM, ENCFF419RSJ, ENCFF613WKG, ENCFF646KAN 559881 ENCODE Processing Pipeline 3c3c804b17f026e58e7beb8e00602478 https://www.encodeproject.org/files/ENCFF919CRG/@@download/ENCFF919CRG.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF824YMX bed narrowPeak optimal idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF159RSM, ENCFF419RSJ, ENCFF613WKG, ENCFF646KAN 734290 ENCODE Processing Pipeline 03bfee7ee344daa8663e80822480b3ad https://www.encodeproject.org/files/ENCFF824YMX/@@download/ENCFF824YMX.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF731GZP bigBed narrowPeak conservative idr thresholded peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF919CRG 1087913 ENCODE Processing Pipeline 267587643028520e24d59d9fe5e54f0c https://www.encodeproject.org/files/ENCFF731GZP/@@download/ENCFF731GZP.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF640PHT fastq reads ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF359NBE 2909629705 Michael Snyder, Stanford a2397c136020c2444ea942876a6d4006 SRA:SRR5111630 https://www.encodeproject.org/files/ENCFF640PHT/@@download/ENCFF640PHT.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF716DCY fastq reads ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF436WIC 3585459965 Michael Snyder, Stanford 32511ad253a5dab6191d7fcc8c9d419e SRA:SRR5111629 https://www.encodeproject.org/files/ENCFF716DCY/@@download/ENCFF716DCY.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF436WIC fastq reads ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF716DCY 3720243388 Michael Snyder, Stanford ee581379e373e137de5f17bac845bdca SRA:SRR5111629 https://www.encodeproject.org/files/ENCFF436WIC/@@download/ENCFF436WIC.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF359NBE fastq reads ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF640PHT 3047932374 Michael Snyder, Stanford 1117b4ca9dee488c662f5aade5077edd SRA:SRR5111630 https://www.encodeproject.org/files/ENCFF359NBE/@@download/ENCFF359NBE.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF010SNI bam unfiltered alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF359NBE, ENCFF640PHT, ENCFF807MUK 5844921129 ENCODE Processing Pipeline 22f908fde5ea9c14c6564e9d9b50bdab https://www.encodeproject.org/files/ENCFF010SNI/@@download/ENCFF010SNI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF183SPQ bam unfiltered alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF436WIC, ENCFF716DCY, ENCFF807MUK 7002618912 ENCODE Processing Pipeline 5cbdb8c4e1778334029881c155d5bd25 https://www.encodeproject.org/files/ENCFF183SPQ/@@download/ENCFF183SPQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF834DTI bam unfiltered alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF436WIC, ENCFF643CGH, ENCFF716DCY 7013617697 ENCODE Processing Pipeline d45678f0ccc23a50ffdd21110b540c4d https://www.encodeproject.org/files/ENCFF834DTI/@@download/ENCFF834DTI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF349VXB bam unfiltered alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF359NBE, ENCFF640PHT, ENCFF643CGH 5853842339 ENCODE Processing Pipeline ef46c01af86b35dc3a118e5fb940d1ed https://www.encodeproject.org/files/ENCFF349VXB/@@download/ENCFF349VXB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF479EPN bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF359NBE, ENCFF640PHT, ENCFF643CGH 4899233644 ENCODE Processing Pipeline 6ed5a077c72e8ef6bd4fa1775ff742a5 https://www.encodeproject.org/files/ENCFF479EPN/@@download/ENCFF479EPN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF231LLP bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF359NBE, ENCFF640PHT, ENCFF807MUK 4895548961 ENCODE Processing Pipeline 625c56d1760854a6955e20774b061dd4 https://www.encodeproject.org/files/ENCFF231LLP/@@download/ENCFF231LLP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF875UDE bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF436WIC, ENCFF643CGH, ENCFF716DCY 5878915430 ENCODE Processing Pipeline b8becb3e4e310ca053581a01c4c47e88 https://www.encodeproject.org/files/ENCFF875UDE/@@download/ENCFF875UDE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF914AEL bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF436WIC, ENCFF716DCY, ENCFF807MUK 5873393383 ENCODE Processing Pipeline 09edc17721d5016f77facd4e67e55cbf https://www.encodeproject.org/files/ENCFF914AEL/@@download/ENCFF914AEL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF870LCX bigWig signal p-value ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF231LLP 1578043946 ENCODE Processing Pipeline 3ec6044a8943d43c691285427ddfd78c https://www.encodeproject.org/files/ENCFF870LCX/@@download/ENCFF870LCX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF068CKT bigWig fold change over control ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF914AEL 1903666179 ENCODE Processing Pipeline f8954d00231bcd88f9db1a2d8a6441dd https://www.encodeproject.org/files/ENCFF068CKT/@@download/ENCFF068CKT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF547QCB bigWig signal p-value ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF914AEL 1868097736 ENCODE Processing Pipeline 982c2d50982f95e8cfc5ef06681a5a68 https://www.encodeproject.org/files/ENCFF547QCB/@@download/ENCFF547QCB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF186PKK bigWig fold change over control ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF231LLP 1737989291 ENCODE Processing Pipeline ab9c0b22cd4d4f75200f91290c5a5eae https://www.encodeproject.org/files/ENCFF186PKK/@@download/ENCFF186PKK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF232HUX bigWig signal p-value ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF231LLP, ENCFF914AEL 1902259728 ENCODE Processing Pipeline 3b256f881a6803e9dc56c56f4c172ac5 https://www.encodeproject.org/files/ENCFF232HUX/@@download/ENCFF232HUX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF816PEQ bigWig fold change over control ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF231LLP, ENCFF914AEL 2465532513 ENCODE Processing Pipeline ff4881c56a88d61790a54c1caab83105 https://www.encodeproject.org/files/ENCFF816PEQ/@@download/ENCFF816PEQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF953MKM bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF231LLP 7182235 ENCODE Processing Pipeline 2679a0c52eccc9100ccbe40aed6f8450 https://www.encodeproject.org/files/ENCFF953MKM/@@download/ENCFF953MKM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF943IGS bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF914AEL 7184230 ENCODE Processing Pipeline 9625c90bc58fbefa77cb06fe574eb025 https://www.encodeproject.org/files/ENCFF943IGS/@@download/ENCFF943IGS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF709SPL bigBed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF953MKM 13216718 ENCODE Processing Pipeline aeb6632e88b31db355510576aacab7b5 https://www.encodeproject.org/files/ENCFF709SPL/@@download/ENCFF709SPL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF327JZJ bigBed narrowPeak conservative idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF185ABB 832476 ENCODE Processing Pipeline 9e49cbb23ca0599ed82e94e953d20d66 https://www.encodeproject.org/files/ENCFF327JZJ/@@download/ENCFF327JZJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF292ASM bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF182WHU, ENCFF231LLP, ENCFF914AEL 7353618 ENCODE Processing Pipeline 32ccca108af7ee10a7462e789add777c https://www.encodeproject.org/files/ENCFF292ASM/@@download/ENCFF292ASM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF185ABB bed narrowPeak conservative idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF292ASM, ENCFF943IGS, ENCFF953MKM 362307 ENCODE Processing Pipeline 4a35fd4e7734cf13cdcafa02a5820749 https://www.encodeproject.org/files/ENCFF185ABB/@@download/ENCFF185ABB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF672WWM bigBed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF943IGS 13229752 ENCODE Processing Pipeline 5e921b5119ecf4fb875c662cb4985126 https://www.encodeproject.org/files/ENCFF672WWM/@@download/ENCFF672WWM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF892JCO bigBed narrowPeak optimal idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF545SII 959016 ENCODE Processing Pipeline 6a7da9876a0359b6a95e9c1d133ed335 https://www.encodeproject.org/files/ENCFF892JCO/@@download/ENCFF892JCO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF293EMD bigBed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF292ASM 13200746 ENCODE Processing Pipeline 238d6a4e8912cded43fa59a4e8e7bc8b https://www.encodeproject.org/files/ENCFF293EMD/@@download/ENCFF293EMD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF545SII bed narrowPeak optimal idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF292ASM, ENCFF943IGS, ENCFF953MKM 425914 ENCODE Processing Pipeline 5ba920c75ba258c883b55b0590ceedef https://www.encodeproject.org/files/ENCFF545SII/@@download/ENCFF545SII.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF988PJJ bigWig signal p-value ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF479EPN, ENCFF810LLR 1369335856 ENCODE Processing Pipeline 68c94c86f1859a1a96125a7dae3b05d0 https://www.encodeproject.org/files/ENCFF988PJJ/@@download/ENCFF988PJJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF107EAR bigWig signal p-value ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF810LLR, ENCFF875UDE 1634178427 ENCODE Processing Pipeline 50c6963a72f546cf765e602038bf62e5 https://www.encodeproject.org/files/ENCFF107EAR/@@download/ENCFF107EAR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF921NAC bigWig signal p-value ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF479EPN, ENCFF810LLR, ENCFF875UDE 1923314237 ENCODE Processing Pipeline dfcec1e291dea9000fd03c30829ede03 https://www.encodeproject.org/files/ENCFF921NAC/@@download/ENCFF921NAC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF688VIC bigWig fold change over control ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF479EPN, ENCFF810LLR 1726000515 ENCODE Processing Pipeline e637cd63cfb76bd9f704f2e27b646fc9 https://www.encodeproject.org/files/ENCFF688VIC/@@download/ENCFF688VIC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF970BBT bigWig fold change over control ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF810LLR, ENCFF875UDE 1927599051 ENCODE Processing Pipeline 2835b64e24c2c5d057d7cb143be8d8dc https://www.encodeproject.org/files/ENCFF970BBT/@@download/ENCFF970BBT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF862HTP bigWig fold change over control ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF479EPN, ENCFF810LLR, ENCFF875UDE 2494009841 ENCODE Processing Pipeline 05eb8c49d9656c88d7e7ffbaa090bf67 https://www.encodeproject.org/files/ENCFF862HTP/@@download/ENCFF862HTP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF090VNO bed narrowPeak optimal idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF419RSJ, ENCFF853ZFN, ENCFF876YBE, ENCFF928SGA 420100 ENCODE Processing Pipeline 88f3e8ac115863949956f8f3713e293f https://www.encodeproject.org/files/ENCFF090VNO/@@download/ENCFF090VNO.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF727XRU bigBed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF876YBE 13241701 ENCODE Processing Pipeline 47ac35602e77bf54771f12ee60284413 https://www.encodeproject.org/files/ENCFF727XRU/@@download/ENCFF727XRU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF876YBE bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF810LLR, ENCFF875UDE 7149144 ENCODE Processing Pipeline 98710654063a27e9e1ff113408d8d17f https://www.encodeproject.org/files/ENCFF876YBE/@@download/ENCFF876YBE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF088LOG bigBed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF853ZFN 13209784 ENCODE Processing Pipeline 75bc5110af239c008284d865a3d4c4ec https://www.encodeproject.org/files/ENCFF088LOG/@@download/ENCFF088LOG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF853ZFN bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF479EPN, ENCFF810LLR, ENCFF875UDE 7350755 ENCODE Processing Pipeline d2e3a0f9772eda01664a52c2e860bfc8 https://www.encodeproject.org/files/ENCFF853ZFN/@@download/ENCFF853ZFN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF287FQX bigBed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF928SGA 13226349 ENCODE Processing Pipeline b3a7615c804a016e8f1644b25cc1f52f https://www.encodeproject.org/files/ENCFF287FQX/@@download/ENCFF287FQX.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF928SGA bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF479EPN, ENCFF810LLR 7138345 ENCODE Processing Pipeline 08855bde4c555c94b443a279d365dc78 https://www.encodeproject.org/files/ENCFF928SGA/@@download/ENCFF928SGA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF381QID bed narrowPeak conservative idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF419RSJ, ENCFF853ZFN, ENCFF876YBE, ENCFF928SGA 363801 ENCODE Processing Pipeline d8065c19c213e10d9b314faf6dc4b221 https://www.encodeproject.org/files/ENCFF381QID/@@download/ENCFF381QID.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF483XLR bigBed narrowPeak conservative idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF381QID 838318 ENCODE Processing Pipeline 51828bb100f1d07f92cc24a0a494f70a https://www.encodeproject.org/files/ENCFF483XLR/@@download/ENCFF483XLR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF553EBN bigBed narrowPeak optimal idr thresholded peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF090VNO 952105 ENCODE Processing Pipeline f676e9c3c4f438d894fa7718c8d65f81 https://www.encodeproject.org/files/ENCFF553EBN/@@download/ENCFF553EBN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF002EVM fastq reads ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 1 36 single-ended 709049123 Michael Snyder, Stanford 3da1cca87933fbc59997b1282dac514e SRA:SRR6212691 https://www.encodeproject.org/files/ENCFF002EVM/@@download/ENCFF002EVM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF584LXI/ released low read length, low read depth duplicate lane review ENCFF002EVP fastq reads ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 1 36 single-ended 773730856 Michael Snyder, Stanford a29e62925a407a2ece0b7233f1c3a17f SRA:SRR6212692 https://www.encodeproject.org/files/ENCFF002EVP/@@download/ENCFF002EVP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF492DKQ/ released low read length, low read depth duplicate lane review ENCFF258LUK bam unfiltered alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 36 ENCFF002EVP, ENCFF643CGH 954189102 ENCODE Processing Pipeline 10b69efd3dbfc4d99dd8fecf8f20f035 https://www.encodeproject.org/files/ENCFF258LUK/@@download/ENCFF258LUK.bam GRCh38 released low read length, low read depth duplicate lane review ENCFF635KHI bam unfiltered alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 36 ENCFF002EVM, ENCFF643CGH 872448476 ENCODE Processing Pipeline 7020d6bf19f4225ee2a9e35dc2b46442 https://www.encodeproject.org/files/ENCFF635KHI/@@download/ENCFF635KHI.bam GRCh38 released low read length, low read depth duplicate lane review ENCFF039IQB bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 36 ENCFF002EVP, ENCFF643CGH 662813857 ENCODE Processing Pipeline 9d5072c810205c7756db7598fdca8b92 https://www.encodeproject.org/files/ENCFF039IQB/@@download/ENCFF039IQB.bam GRCh38 released low read length, low read depth duplicate lane review ENCFF026TRP bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 36 ENCFF002EVM, ENCFF643CGH 604512668 ENCODE Processing Pipeline 6958524e5bc835c55d6cc2c0645e51ef https://www.encodeproject.org/files/ENCFF026TRP/@@download/ENCFF026TRP.bam GRCh38 released low read length, low read depth duplicate lane review ENCFF331GON bam unfiltered alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 36 ENCFF002EVP, ENCFF807MUK 949705106 ENCODE Processing Pipeline ece0a5a1fed064b9fdb07ad1f108bd32 https://www.encodeproject.org/files/ENCFF331GON/@@download/ENCFF331GON.bam hg19 released low read length, low read depth duplicate lane review ENCFF766IEV bam unfiltered alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 36 ENCFF002EVM, ENCFF807MUK 868648670 ENCODE Processing Pipeline c8d88db9a4b0657784e40223c53a12b7 https://www.encodeproject.org/files/ENCFF766IEV/@@download/ENCFF766IEV.bam hg19 released low read length, low read depth duplicate lane review ENCFF111WZN bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 36 ENCFF002EVM, ENCFF807MUK 604891610 ENCODE Processing Pipeline d7c1ac163f3ce5287d365b0d2803338e https://www.encodeproject.org/files/ENCFF111WZN/@@download/ENCFF111WZN.bam hg19 released low read length, low read depth duplicate lane review ENCFF677SXP bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 36 ENCFF002EVP, ENCFF807MUK 663192682 ENCODE Processing Pipeline 526888016a16955b6edc57a37566e3c2 https://www.encodeproject.org/files/ENCFF677SXP/@@download/ENCFF677SXP.bam hg19 released low read length, low read depth duplicate lane review ENCFF307CCE bigWig signal p-value ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF111WZN, ENCFF880YHS 474498770 ENCODE Processing Pipeline ae5241e64e73ead372b604874b49850c https://www.encodeproject.org/files/ENCFF307CCE/@@download/ENCFF307CCE.bigWig hg19 released low read length, low read depth duplicate lane review ENCFF263SQI bigWig signal p-value ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF485QJI, ENCFF677SXP 538257523 ENCODE Processing Pipeline 49b5fde6d24152c2311088ad90a889a0 https://www.encodeproject.org/files/ENCFF263SQI/@@download/ENCFF263SQI.bigWig hg19 released low read length, low read depth duplicate lane review ENCFF207OPQ bigWig fold change over control ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF111WZN, ENCFF880YHS 395735644 ENCODE Processing Pipeline 35ebb504feca18f429d39591379d60f5 https://www.encodeproject.org/files/ENCFF207OPQ/@@download/ENCFF207OPQ.bigWig hg19 released low read length, low read depth duplicate lane review ENCFF919IHT bigWig fold change over control ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF111WZN, ENCFF485QJI, ENCFF677SXP, ENCFF880YHS 923744592 ENCODE Processing Pipeline 1edf51b95cff2e710eaf4c335dcd9663 https://www.encodeproject.org/files/ENCFF919IHT/@@download/ENCFF919IHT.bigWig hg19 released low read length, low read depth duplicate lane review ENCFF683ISW bigBed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF332EWZ 11464955 ENCODE Processing Pipeline 03b746458e4c1eb65a925cef1d163279 https://www.encodeproject.org/files/ENCFF683ISW/@@download/ENCFF683ISW.bigBed hg19 released low read length, low read depth duplicate lane review ENCFF912VUT bigBed narrowPeak conservative idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF132RJM 881499 ENCODE Processing Pipeline 6178472644e16586a34584feb64fa8bc https://www.encodeproject.org/files/ENCFF912VUT/@@download/ENCFF912VUT.bigBed hg19 released low read length, low read depth duplicate lane review ENCFF574BDD bigWig signal p-value ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF111WZN, ENCFF485QJI, ENCFF677SXP, ENCFF880YHS 1092543547 ENCODE Processing Pipeline 52a9a31ec721f683dc1cc70b1f773294 https://www.encodeproject.org/files/ENCFF574BDD/@@download/ENCFF574BDD.bigWig hg19 released low read length, low read depth duplicate lane review ENCFF714YWI bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF111WZN, ENCFF880YHS 5092773 ENCODE Processing Pipeline 940cbab842c01fec6fd2bb43df582e2d https://www.encodeproject.org/files/ENCFF714YWI/@@download/ENCFF714YWI.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF011IIF bigBed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF714YWI 11067331 ENCODE Processing Pipeline 83d697ca83ee071f0463679e987c4c48 https://www.encodeproject.org/files/ENCFF011IIF/@@download/ENCFF011IIF.bigBed hg19 released low read length, low read depth duplicate lane review ENCFF132RJM bed narrowPeak conservative idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF332EWZ, ENCFF522TKF, ENCFF714YWI 506053 ENCODE Processing Pipeline b370c667aac9f7cc08dd005683aefa58 https://www.encodeproject.org/files/ENCFF132RJM/@@download/ENCFF132RJM.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF359IPV bed narrowPeak optimal idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF332EWZ, ENCFF522TKF, ENCFF714YWI 579404 ENCODE Processing Pipeline 8fe42a8e0c96a42da9a055e03e58aed6 https://www.encodeproject.org/files/ENCFF359IPV/@@download/ENCFF359IPV.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF522TKF bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF485QJI, ENCFF677SXP 4919084 ENCODE Processing Pipeline 97ff9851e73b8907f9b194f29be041da https://www.encodeproject.org/files/ENCFF522TKF/@@download/ENCFF522TKF.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF448YFT bigWig fold change over control ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF485QJI, ENCFF677SXP 424181162 ENCODE Processing Pipeline 0daa466b4714ea5643a98903e1670b25 https://www.encodeproject.org/files/ENCFF448YFT/@@download/ENCFF448YFT.bigWig hg19 released low read length, low read depth duplicate lane review ENCFF332EWZ bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF111WZN, ENCFF485QJI, ENCFF677SXP, ENCFF880YHS 6078860 ENCODE Processing Pipeline 3f5e8df76074fe07a23eb3e85c9c4fa7 https://www.encodeproject.org/files/ENCFF332EWZ/@@download/ENCFF332EWZ.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF671GCT bigBed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF522TKF 11094614 ENCODE Processing Pipeline 3560111de10b0d3cbb7f32deb580e7b2 https://www.encodeproject.org/files/ENCFF671GCT/@@download/ENCFF671GCT.bigBed hg19 released low read length, low read depth duplicate lane review ENCFF885IFK bigBed narrowPeak optimal idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF359IPV 975644 ENCODE Processing Pipeline 17e06bb761d4a5d19ae55dd1ad3fcad8 https://www.encodeproject.org/files/ENCFF885IFK/@@download/ENCFF885IFK.bigBed hg19 released low read length, low read depth duplicate lane review ENCFF663HOV bigWig signal p-value ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF026TRP, ENCFF195PNZ 574006638 ENCODE Processing Pipeline f9fca45a2ed08b503567f108e0fc027e https://www.encodeproject.org/files/ENCFF663HOV/@@download/ENCFF663HOV.bigWig GRCh38 released low read length, low read depth duplicate lane review ENCFF934TMM bigWig signal p-value ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF039IQB, ENCFF928IDQ 538305930 ENCODE Processing Pipeline 506bc006568e193dd685a0f4b76684c4 https://www.encodeproject.org/files/ENCFF934TMM/@@download/ENCFF934TMM.bigWig GRCh38 released low read length, low read depth duplicate lane review ENCFF993MXO bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF039IQB, ENCFF928IDQ 4881892 ENCODE Processing Pipeline b7af548bbb683f3369a9b013602fc741 https://www.encodeproject.org/files/ENCFF993MXO/@@download/ENCFF993MXO.bed.gz GRCh38 released low read length, low read depth duplicate lane review ENCFF287VQK bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF026TRP, ENCFF039IQB, ENCFF195PNZ, ENCFF928IDQ 6106842 ENCODE Processing Pipeline 72ed2565b449f7057a7b337c12a70b20 https://www.encodeproject.org/files/ENCFF287VQK/@@download/ENCFF287VQK.bed.gz GRCh38 released low read length, low read depth duplicate lane review ENCFF329QBS bigWig fold change over control ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF039IQB, ENCFF928IDQ 426411272 ENCODE Processing Pipeline 3e5c0046560c7b6ec659cd8cd54bcd63 https://www.encodeproject.org/files/ENCFF329QBS/@@download/ENCFF329QBS.bigWig GRCh38 released low read length, low read depth duplicate lane review ENCFF341PAX bigBed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF064CVD 10989626 ENCODE Processing Pipeline 79e5bdb12bd61318b5874bcbf89d85de https://www.encodeproject.org/files/ENCFF341PAX/@@download/ENCFF341PAX.bigBed GRCh38 released low read length, low read depth duplicate lane review ENCFF906BPJ bigWig signal p-value ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF026TRP, ENCFF039IQB, ENCFF195PNZ, ENCFF928IDQ 1057848001 ENCODE Processing Pipeline ebe14b8664e9881ea62a6c98c3d4bde8 https://www.encodeproject.org/files/ENCFF906BPJ/@@download/ENCFF906BPJ.bigWig GRCh38 released low read length, low read depth duplicate lane review ENCFF738YIR bigWig fold change over control ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF026TRP, ENCFF195PNZ 395614731 ENCODE Processing Pipeline ee37190bab11e353ef50c6b610c48c23 https://www.encodeproject.org/files/ENCFF738YIR/@@download/ENCFF738YIR.bigWig GRCh38 released low read length, low read depth duplicate lane review ENCFF298JKD bigBed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF287VQK 11672869 ENCODE Processing Pipeline c49968274904a5d1513c77d3723a4854 https://www.encodeproject.org/files/ENCFF298JKD/@@download/ENCFF298JKD.bigBed GRCh38 released low read length, low read depth duplicate lane review ENCFF217ZMF bed narrowPeak optimal idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF064CVD, ENCFF287VQK, ENCFF419RSJ, ENCFF993MXO 638765 ENCODE Processing Pipeline 2157169fd29e3856d2c384fa96587970 https://www.encodeproject.org/files/ENCFF217ZMF/@@download/ENCFF217ZMF.bed.gz GRCh38 released low read length, low read depth duplicate lane review ENCFF228HNI bigWig fold change over control ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF026TRP, ENCFF039IQB, ENCFF195PNZ, ENCFF928IDQ 901409366 ENCODE Processing Pipeline 710f2b2fc639adf2a21455f0c1d552e4 https://www.encodeproject.org/files/ENCFF228HNI/@@download/ENCFF228HNI.bigWig GRCh38 released low read length, low read depth duplicate lane review ENCFF064CVD bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF026TRP, ENCFF195PNZ 4942844 ENCODE Processing Pipeline 4af882c2171f7ff022e9e45f2e453833 https://www.encodeproject.org/files/ENCFF064CVD/@@download/ENCFF064CVD.bed.gz GRCh38 released low read length, low read depth duplicate lane review ENCFF847XXR bed narrowPeak conservative idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF064CVD, ENCFF287VQK, ENCFF419RSJ, ENCFF993MXO 555041 ENCODE Processing Pipeline b4b0ff1a832410cdf73fcb722fd3ccaf https://www.encodeproject.org/files/ENCFF847XXR/@@download/ENCFF847XXR.bed.gz GRCh38 released low read length, low read depth duplicate lane review ENCFF286UCV bigBed narrowPeak conservative idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF847XXR 961231 ENCODE Processing Pipeline 6d317765968be3eaa645c25b8f9d9d25 https://www.encodeproject.org/files/ENCFF286UCV/@@download/ENCFF286UCV.bigBed GRCh38 released low read length, low read depth duplicate lane review ENCFF526VHO bigBed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF993MXO 11080808 ENCODE Processing Pipeline 19a8b9dfa1862bbe122f44bb111071da https://www.encodeproject.org/files/ENCFF526VHO/@@download/ENCFF526VHO.bigBed GRCh38 released low read length, low read depth duplicate lane review ENCFF579QRT bigBed narrowPeak optimal idr thresholded peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1, 2 ENCFF217ZMF 1071700 ENCODE Processing Pipeline 58093b59dc469e65e09f47430f039c93 https://www.encodeproject.org/files/ENCFF579QRT/@@download/ENCFF579QRT.bigBed GRCh38 released low read length, low read depth duplicate lane review ENCFF812OGD bam unfiltered alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF455ZRR, ENCFF807MUK, ENCFF899JCN 5560719362 ENCODE Processing Pipeline 3ae77734571e1c2ed560384123603897 https://www.encodeproject.org/files/ENCFF812OGD/@@download/ENCFF812OGD.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF667ZPE bam unfiltered alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF222CTH, ENCFF807MUK, ENCFF908NRM 6951049260 ENCODE Processing Pipeline 0deb6b73e06950ada19595b487f30b50 https://www.encodeproject.org/files/ENCFF667ZPE/@@download/ENCFF667ZPE.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF455ZRR fastq reads ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF899JCN 2577108797 Michael Snyder, Stanford 03bc959f4c337c979bb68553f619a5eb https://www.encodeproject.org/files/ENCFF455ZRR/@@download/ENCFF455ZRR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF908NRM fastq reads ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF222CTH 3301924049 Michael Snyder, Stanford c0b6bd45d294c60c03dd27089c8c0d0b https://www.encodeproject.org/files/ENCFF908NRM/@@download/ENCFF908NRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF222CTH fastq reads ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF908NRM 3308293778 Michael Snyder, Stanford 418739b825539609904ecd5f6e6b77c9 https://www.encodeproject.org/files/ENCFF222CTH/@@download/ENCFF222CTH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF899JCN fastq reads ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF455ZRR 2579848696 Michael Snyder, Stanford 16ae7844c6146fa72aebe789539847d2 https://www.encodeproject.org/files/ENCFF899JCN/@@download/ENCFF899JCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF416JQZ bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF455ZRR, ENCFF807MUK, ENCFF899JCN 4393457590 ENCODE Processing Pipeline 79a869dd95a68c2ca52364c4ae9e7211 https://www.encodeproject.org/files/ENCFF416JQZ/@@download/ENCFF416JQZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF860EBI bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF222CTH, ENCFF807MUK, ENCFF908NRM 5234048696 ENCODE Processing Pipeline be1cdf6a81db41ad91317e183e278148 https://www.encodeproject.org/files/ENCFF860EBI/@@download/ENCFF860EBI.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF294YIV bigWig signal p-value ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF860EBI 1104900611 ENCODE Processing Pipeline d9bdf10e7742857898bcf0b70077687f https://www.encodeproject.org/files/ENCFF294YIV/@@download/ENCFF294YIV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF933ZOI bigWig signal p-value ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF416JQZ 1161574388 ENCODE Processing Pipeline dccfe1669706051a4d5ce1bdf04396c6 https://www.encodeproject.org/files/ENCFF933ZOI/@@download/ENCFF933ZOI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF739KRI bigWig signal p-value ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF416JQZ, ENCFF581ZJL, ENCFF860EBI 2189823278 ENCODE Processing Pipeline 090306c510ead1b1798581fc9d028f8d https://www.encodeproject.org/files/ENCFF739KRI/@@download/ENCFF739KRI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF040FYC bigWig fold change over control ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF860EBI 1414102103 ENCODE Processing Pipeline c7c483476d7df7e9d495c8477ec9a619 https://www.encodeproject.org/files/ENCFF040FYC/@@download/ENCFF040FYC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF812XYN bigWig fold change over control ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF416JQZ 1208019991 ENCODE Processing Pipeline 5a2bceba735e2db75ba6240ce4df0d23 https://www.encodeproject.org/files/ENCFF812XYN/@@download/ENCFF812XYN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF290UIT bigWig fold change over control ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF416JQZ, ENCFF581ZJL, ENCFF860EBI 2235012328 ENCODE Processing Pipeline 2c55cc85bb4f326eef371c03d5ef2656 https://www.encodeproject.org/files/ENCFF290UIT/@@download/ENCFF290UIT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF085YVB bam unfiltered alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF455ZRR, ENCFF643CGH, ENCFF899JCN 5566505449 ENCODE Processing Pipeline 40a8555c23c27f60eb43142d6ef0190d https://www.encodeproject.org/files/ENCFF085YVB/@@download/ENCFF085YVB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF139YNO bam unfiltered alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF222CTH, ENCFF643CGH, ENCFF908NRM 6957914426 ENCODE Processing Pipeline 2d7db18591b104188dc5f8c8d8dbd551 https://www.encodeproject.org/files/ENCFF139YNO/@@download/ENCFF139YNO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF553FEG bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF455ZRR, ENCFF643CGH, ENCFF899JCN 4395899483 ENCODE Processing Pipeline 9144b23a4c212e7484f31e3f3ca909e7 https://www.encodeproject.org/files/ENCFF553FEG/@@download/ENCFF553FEG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF584VYO bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF222CTH, ENCFF643CGH, ENCFF908NRM 5237411875 ENCODE Processing Pipeline 96ed1a8f0864ce57cc4059bd049434e8 https://www.encodeproject.org/files/ENCFF584VYO/@@download/ENCFF584VYO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF526KTR bigWig signal p-value ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF584VYO, ENCFF910IKB 1101016587 ENCODE Processing Pipeline d245ce78b81a35f9270c7110fcb8ea27 https://www.encodeproject.org/files/ENCFF526KTR/@@download/ENCFF526KTR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF088JLD bigWig signal p-value ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF553FEG 1152407038 ENCODE Processing Pipeline 9c9b41419195beda5fda5ec0d2b0bd5d https://www.encodeproject.org/files/ENCFF088JLD/@@download/ENCFF088JLD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF685VJY bigWig signal p-value ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF553FEG, ENCFF584VYO, ENCFF910IKB 2172846768 ENCODE Processing Pipeline b464a1af8e6736ee68fdbb20136b5487 https://www.encodeproject.org/files/ENCFF685VJY/@@download/ENCFF685VJY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF428DLG bigWig fold change over control ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF584VYO, ENCFF910IKB 1387280176 ENCODE Processing Pipeline 5bf8bf49da9dc75c50c1ad638c23bf02 https://www.encodeproject.org/files/ENCFF428DLG/@@download/ENCFF428DLG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF695WUM bigWig fold change over control ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF553FEG 1208391730 ENCODE Processing Pipeline 538f37d0793bab5e469bb917a0638ada https://www.encodeproject.org/files/ENCFF695WUM/@@download/ENCFF695WUM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF916WAT bigWig fold change over control ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF553FEG, ENCFF584VYO, ENCFF910IKB 2238136668 ENCODE Processing Pipeline 9fe75324199aace5a8a6c95c46171d96 https://www.encodeproject.org/files/ENCFF916WAT/@@download/ENCFF916WAT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF586LFC bigBed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF419WWB 13244685 ENCODE Processing Pipeline 69001f77d5619910b93adc6481fcddc1 https://www.encodeproject.org/files/ENCFF586LFC/@@download/ENCFF586LFC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF657MZX bigBed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF530MXL 13139183 ENCODE Processing Pipeline e4ef49d805e727161e430ae245eb86dc https://www.encodeproject.org/files/ENCFF657MZX/@@download/ENCFF657MZX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF682EHA bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF553FEG 6802229 ENCODE Processing Pipeline 7709eda1d04a4d416df164b871a3d09a https://www.encodeproject.org/files/ENCFF682EHA/@@download/ENCFF682EHA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF530MXL bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF553FEG, ENCFF584VYO, ENCFF910IKB 7266300 ENCODE Processing Pipeline a54c01bd414a3195cf04f04f3691fd2f https://www.encodeproject.org/files/ENCFF530MXL/@@download/ENCFF530MXL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF419WWB bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF584VYO, ENCFF910IKB 6861907 ENCODE Processing Pipeline 4ec29d2c8f4d69f2e3da2c5162bfa443 https://www.encodeproject.org/files/ENCFF419WWB/@@download/ENCFF419WWB.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF622HKL bigBed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF682EHA 13255322 ENCODE Processing Pipeline 956e7be8ea5a353b8bf22c73acba3bd5 https://www.encodeproject.org/files/ENCFF622HKL/@@download/ENCFF622HKL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF330GYP bigBed narrowPeak optimal idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF596JDS 538506 ENCODE Processing Pipeline 25bb06d3b0c27fba4a46597c94fa866f https://www.encodeproject.org/files/ENCFF330GYP/@@download/ENCFF330GYP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF337XJU bed narrowPeak conservative idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF419WWB, ENCFF530MXL, ENCFF682EHA 164198 ENCODE Processing Pipeline b507ea7b356e505c62edf936a25a3391 https://www.encodeproject.org/files/ENCFF337XJU/@@download/ENCFF337XJU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF904ZWB bigBed narrowPeak conservative idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF337XJU 395116 ENCODE Processing Pipeline e3a3f0b7cb36da457ffda1696ffd5d49 https://www.encodeproject.org/files/ENCFF904ZWB/@@download/ENCFF904ZWB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF596JDS bed narrowPeak optimal idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF419WWB, ENCFF530MXL, ENCFF682EHA 248166 ENCODE Processing Pipeline 8669fe48aed2c71529f96de233393304 https://www.encodeproject.org/files/ENCFF596JDS/@@download/ENCFF596JDS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF603AEE bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF416JQZ, ENCFF581ZJL, ENCFF860EBI 7263264 ENCODE Processing Pipeline 96046dca93f9cb913eb857ff55dcb341 https://www.encodeproject.org/files/ENCFF603AEE/@@download/ENCFF603AEE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF397VXH bigBed narrowPeak conservative idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF188ZMQ 392724 ENCODE Processing Pipeline fb23c40954b518152fd2d217fc3c912e https://www.encodeproject.org/files/ENCFF397VXH/@@download/ENCFF397VXH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF581ZZT bed narrowPeak optimal idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF313WJM, ENCFF603AEE, ENCFF802MWF 244445 ENCODE Processing Pipeline 1ee0c43847b45d2db7e83b4bc1c076d2 https://www.encodeproject.org/files/ENCFF581ZZT/@@download/ENCFF581ZZT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF941RHA bigBed narrowPeak optimal idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF581ZZT 529319 ENCODE Processing Pipeline 5e32bb902a7fa5db11fb522f4a6623cf https://www.encodeproject.org/files/ENCFF941RHA/@@download/ENCFF941RHA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF802MWF bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF416JQZ 6807370 ENCODE Processing Pipeline b4209d28352bb320a3f5260cf60d74b3 https://www.encodeproject.org/files/ENCFF802MWF/@@download/ENCFF802MWF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF481RMP bigBed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF313WJM 13225093 ENCODE Processing Pipeline 75b9a87ad20b9c4a4c1c69ab62007863 https://www.encodeproject.org/files/ENCFF481RMP/@@download/ENCFF481RMP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF313WJM bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF860EBI 6856971 ENCODE Processing Pipeline a0f9ce9c8a662389415db892470f3db3 https://www.encodeproject.org/files/ENCFF313WJM/@@download/ENCFF313WJM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF160UEJ bigBed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF603AEE 13123195 ENCODE Processing Pipeline 1ddee352be5ef0c2a141010f61683549 https://www.encodeproject.org/files/ENCFF160UEJ/@@download/ENCFF160UEJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF188ZMQ bed narrowPeak conservative idr thresholded peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF313WJM, ENCFF603AEE, ENCFF802MWF 163896 ENCODE Processing Pipeline 0148adf3177f71c956b265d5311b7e9d https://www.encodeproject.org/files/ENCFF188ZMQ/@@download/ENCFF188ZMQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF097YFC bigBed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF802MWF 13246313 ENCODE Processing Pipeline 10c3a964a330f2547b0be1f005b9c78c https://www.encodeproject.org/files/ENCFF097YFC/@@download/ENCFF097YFC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF898GAP fastq reads ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF279YEI 3016733329 Michael Snyder, Stanford aa26f48ee66b8e7ce9b2327a3e7b59b4 SRA:SRR6214204 https://www.encodeproject.org/files/ENCFF898GAP/@@download/ENCFF898GAP.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking ENCFF279YEI fastq reads ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF898GAP 3670232878 Michael Snyder, Stanford 25f3cde3a5cf22411fe7c3e99584b59c SRA:SRR6214204 https://www.encodeproject.org/files/ENCFF279YEI/@@download/ENCFF279YEI.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking ENCFF119WDG fastq reads ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF109JFR 2367969783 Michael Snyder, Stanford fb5f0f6aea3a3f3e3b61fb11c78df60d SRA:SRR6214203 https://www.encodeproject.org/files/ENCFF119WDG/@@download/ENCFF119WDG.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking ENCFF109JFR fastq reads ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF119WDG 2642489162 Michael Snyder, Stanford ae3c30e1ee97e53aa2380f1d0bc528b1 SRA:SRR6214203 https://www.encodeproject.org/files/ENCFF109JFR/@@download/ENCFF109JFR.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking ENCFF041FKZ bam unfiltered alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 100 ENCFF109JFR, ENCFF119WDG, ENCFF807MUK 5000317820 ENCODE Processing Pipeline 4f78aef58aa75829a637a13bb419d66a https://www.encodeproject.org/files/ENCFF041FKZ/@@download/ENCFF041FKZ.bam hg19 released mild to moderate bottlenecking ENCFF184TWS bam unfiltered alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 100 ENCFF109JFR, ENCFF119WDG, ENCFF643CGH 5008104102 ENCODE Processing Pipeline 52e99b4a65c99a07404c3bf373d74d03 https://www.encodeproject.org/files/ENCFF184TWS/@@download/ENCFF184TWS.bam GRCh38 released mild to moderate bottlenecking ENCFF775PDT bam unfiltered alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 100 ENCFF279YEI, ENCFF643CGH, ENCFF898GAP 6447544545 ENCODE Processing Pipeline 12dd54a6ce90716d8b1fbfd39543978b https://www.encodeproject.org/files/ENCFF775PDT/@@download/ENCFF775PDT.bam GRCh38 released mild to moderate bottlenecking ENCFF133MFH bam unfiltered alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 100 ENCFF279YEI, ENCFF807MUK, ENCFF898GAP 6438738832 ENCODE Processing Pipeline d735c9c189f6a0a2585cffa43ac8fbf8 https://www.encodeproject.org/files/ENCFF133MFH/@@download/ENCFF133MFH.bam hg19 released mild to moderate bottlenecking ENCFF136IZY bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 100 ENCFF279YEI, ENCFF643CGH, ENCFF898GAP 5074868655 ENCODE Processing Pipeline 3a0dc3e91d03aac7b73d75454638ff2b https://www.encodeproject.org/files/ENCFF136IZY/@@download/ENCFF136IZY.bam GRCh38 released mild to moderate bottlenecking ENCFF406CYG bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 100 ENCFF109JFR, ENCFF119WDG, ENCFF643CGH 4098592530 ENCODE Processing Pipeline 788f639e395ec596772ddb979a8acfd3 https://www.encodeproject.org/files/ENCFF406CYG/@@download/ENCFF406CYG.bam GRCh38 released mild to moderate bottlenecking ENCFF668PAZ bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 100 ENCFF109JFR, ENCFF119WDG, ENCFF807MUK 4096265737 ENCODE Processing Pipeline 7d793e0d66148674c3ca3e2a3f33d7e4 https://www.encodeproject.org/files/ENCFF668PAZ/@@download/ENCFF668PAZ.bam hg19 released mild to moderate bottlenecking ENCFF339RIH bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 100 ENCFF279YEI, ENCFF807MUK, ENCFF898GAP 5071968434 ENCODE Processing Pipeline 332061cc191298b71e01cb6825ce7a47 https://www.encodeproject.org/files/ENCFF339RIH/@@download/ENCFF339RIH.bam hg19 released mild to moderate bottlenecking ENCFF253ZDD bigWig signal p-value ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 1571303841 ENCODE Processing Pipeline fe506ab68cd32459b1e38d12acbc2f42 https://www.encodeproject.org/files/ENCFF253ZDD/@@download/ENCFF253ZDD.bigWig hg19 released mild to moderate bottlenecking ENCFF655VWK bigWig signal p-value ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF339RIH, ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 2330886874 ENCODE Processing Pipeline 6a0c2f0957307610d9ee341ab403cfd0 https://www.encodeproject.org/files/ENCFF655VWK/@@download/ENCFF655VWK.bigWig hg19 released mild to moderate bottlenecking ENCFF402PCN bigWig fold change over control ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF339RIH, ENCFF529BVI, ENCFF772FBN 1860177515 ENCODE Processing Pipeline 224d5a0d20c628cecd400a61a9a19fda https://www.encodeproject.org/files/ENCFF402PCN/@@download/ENCFF402PCN.bigWig hg19 released mild to moderate bottlenecking ENCFF609YUH bigBed narrowPeak optimal idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF550UEU 213266 ENCODE Processing Pipeline 1495b13291a3eddfdadf1e9d650be6f4 https://www.encodeproject.org/files/ENCFF609YUH/@@download/ENCFF609YUH.bigBed hg19 released mild to moderate bottlenecking ENCFF341SDM bigWig signal p-value ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF339RIH, ENCFF529BVI, ENCFF772FBN 1907349032 ENCODE Processing Pipeline 462e9346d295d5c857a5101bae252d22 https://www.encodeproject.org/files/ENCFF341SDM/@@download/ENCFF341SDM.bigWig hg19 released mild to moderate bottlenecking ENCFF139FWO bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF339RIH, ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 7188379 ENCODE Processing Pipeline 9416aea648d51bb3023169be36997048 https://www.encodeproject.org/files/ENCFF139FWO/@@download/ENCFF139FWO.bed.gz hg19 released mild to moderate bottlenecking ENCFF489LFX bigBed narrowPeak conservative idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF205KVS 187141 ENCODE Processing Pipeline c9fac3a89abd4d43eb069bf062888bd7 https://www.encodeproject.org/files/ENCFF489LFX/@@download/ENCFF489LFX.bigBed hg19 released mild to moderate bottlenecking ENCFF550UEU bed narrowPeak optimal idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF121FBN, ENCFF139FWO, ENCFF715GDR 98682 ENCODE Processing Pipeline 813259a064946656fcfdc88f1bede48e https://www.encodeproject.org/files/ENCFF550UEU/@@download/ENCFF550UEU.bed.gz hg19 released mild to moderate bottlenecking ENCFF715GDR bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF339RIH, ENCFF529BVI, ENCFF772FBN 6422534 ENCODE Processing Pipeline 87c2f5b6dbe5f2b3879757ffb220fbf7 https://www.encodeproject.org/files/ENCFF715GDR/@@download/ENCFF715GDR.bed.gz hg19 released mild to moderate bottlenecking ENCFF205KVS bed narrowPeak conservative idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF121FBN, ENCFF139FWO, ENCFF715GDR 79360 ENCODE Processing Pipeline 1607eee1cbae3f29f95565aedb54fc07 https://www.encodeproject.org/files/ENCFF205KVS/@@download/ENCFF205KVS.bed.gz hg19 released mild to moderate bottlenecking ENCFF912CGZ bigWig fold change over control ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 1660508986 ENCODE Processing Pipeline 4ec14004446296de595fd2b8f2045391 https://www.encodeproject.org/files/ENCFF912CGZ/@@download/ENCFF912CGZ.bigWig hg19 released mild to moderate bottlenecking ENCFF012NSN bigWig fold change over control ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF339RIH, ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 2430231092 ENCODE Processing Pipeline 0afa514f09769d93332dfffeffa9aff5 https://www.encodeproject.org/files/ENCFF012NSN/@@download/ENCFF012NSN.bigWig hg19 released mild to moderate bottlenecking ENCFF121FBN bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 6297910 ENCODE Processing Pipeline 3ee91ea72d401a22aed1803105b3b309 https://www.encodeproject.org/files/ENCFF121FBN/@@download/ENCFF121FBN.bed.gz hg19 released mild to moderate bottlenecking ENCFF870XRE bigBed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF121FBN 11512544 ENCODE Processing Pipeline f9fa0cbcfc2b3dcfb7cd1e71a0e46795 https://www.encodeproject.org/files/ENCFF870XRE/@@download/ENCFF870XRE.bigBed hg19 released mild to moderate bottlenecking ENCFF875PVO bigBed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF715GDR 11412203 ENCODE Processing Pipeline fde0cac6bf4c17df43aff0d855da3d83 https://www.encodeproject.org/files/ENCFF875PVO/@@download/ENCFF875PVO.bigBed hg19 released mild to moderate bottlenecking ENCFF647GRI bigBed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF139FWO 11582312 ENCODE Processing Pipeline 0c8da0aca9ca9d1a86f1c63b2836b694 https://www.encodeproject.org/files/ENCFF647GRI/@@download/ENCFF647GRI.bigBed hg19 released mild to moderate bottlenecking ENCFF865DFQ bigWig fold change over control ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF406CYG, ENCFF705ARK, ENCFF802NAW 1684469767 ENCODE Processing Pipeline ee5aa46629fb4f45266fb8cf0579a749 https://www.encodeproject.org/files/ENCFF865DFQ/@@download/ENCFF865DFQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF407NMU bigWig signal p-value ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF136IZY, ENCFF705ARK, ENCFF802NAW 1702135047 ENCODE Processing Pipeline a58527bc8d757777359013aa8cf5c3e0 https://www.encodeproject.org/files/ENCFF407NMU/@@download/ENCFF407NMU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF969HTU bigWig signal p-value ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF406CYG, ENCFF705ARK, ENCFF802NAW 1638774198 ENCODE Processing Pipeline 4ff1c59c6bfc6aa13b5811ffcbae5f1e https://www.encodeproject.org/files/ENCFF969HTU/@@download/ENCFF969HTU.bigWig GRCh38 released mild to moderate bottlenecking ENCFF811NQU bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF406CYG, ENCFF705ARK, ENCFF802NAW 6299667 ENCODE Processing Pipeline 35b3f639e837c2c3e87bae17b0c7eefe https://www.encodeproject.org/files/ENCFF811NQU/@@download/ENCFF811NQU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF291RHQ bigBed narrowPeak optimal idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF694XWV 218593 ENCODE Processing Pipeline 354b7708b6c36f7c3e6c9208effd0a63 https://www.encodeproject.org/files/ENCFF291RHQ/@@download/ENCFF291RHQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF843GNH bigWig fold change over control ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF136IZY, ENCFF406CYG, ENCFF705ARK, ENCFF802NAW 2402943310 ENCODE Processing Pipeline abd11b18de97bef667cca2ba8190dd90 https://www.encodeproject.org/files/ENCFF843GNH/@@download/ENCFF843GNH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF515AIP bigBed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF820MQU 11422991 ENCODE Processing Pipeline bf2ab50dce0c9ceb1356cb5b11f4d843 https://www.encodeproject.org/files/ENCFF515AIP/@@download/ENCFF515AIP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF694XWV bed narrowPeak optimal idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF266CSZ, ENCFF419RSJ, ENCFF811NQU, ENCFF820MQU 100289 ENCODE Processing Pipeline c19b23cd9936d79daf090d1f8ddd452c https://www.encodeproject.org/files/ENCFF694XWV/@@download/ENCFF694XWV.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF711JTN bigWig signal p-value ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF136IZY, ENCFF406CYG, ENCFF705ARK, ENCFF802NAW 2312110434 ENCODE Processing Pipeline 46e2d91e752ff089def9009fdc151bd0 https://www.encodeproject.org/files/ENCFF711JTN/@@download/ENCFF711JTN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF266CSZ bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF136IZY, ENCFF406CYG, ENCFF705ARK, ENCFF802NAW 7201453 ENCODE Processing Pipeline a4a4987bc0fe5dd77a3c6234480bc3f7 https://www.encodeproject.org/files/ENCFF266CSZ/@@download/ENCFF266CSZ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF629STS bigBed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF266CSZ 11632532 ENCODE Processing Pipeline cf01d5e3db07003493a5600d05b9812d https://www.encodeproject.org/files/ENCFF629STS/@@download/ENCFF629STS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF484AVP bed narrowPeak conservative idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF266CSZ, ENCFF419RSJ, ENCFF811NQU, ENCFF820MQU 81193 ENCODE Processing Pipeline 000224dabaa007c52f75c8f885de3e60 https://www.encodeproject.org/files/ENCFF484AVP/@@download/ENCFF484AVP.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF673UEJ bigBed narrowPeak conservative idr thresholded peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF484AVP 191638 ENCODE Processing Pipeline 16a2254e8d407987b0ec68e5f3184c29 https://www.encodeproject.org/files/ENCFF673UEJ/@@download/ENCFF673UEJ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF890SLH bigWig fold change over control ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF136IZY, ENCFF705ARK, ENCFF802NAW 1907764973 ENCODE Processing Pipeline e4c833454aa4544b6b49f9f34ab64292 https://www.encodeproject.org/files/ENCFF890SLH/@@download/ENCFF890SLH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF820MQU bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF136IZY, ENCFF705ARK, ENCFF802NAW 6424269 ENCODE Processing Pipeline 0bc668cc988e434645301bab8045ff9b https://www.encodeproject.org/files/ENCFF820MQU/@@download/ENCFF820MQU.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF574CWP bigBed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF811NQU 11532300 ENCODE Processing Pipeline 0bc345e09b50364caa971477e9eba157 https://www.encodeproject.org/files/ENCFF574CWP/@@download/ENCFF574CWP.bigBed GRCh38 released mild to moderate bottlenecking ENCFF358EYL fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 1 36 single-ended 917928893 Bradley Bernstein, Broad f7108c9051fb03c907218a850e3c4a41 https://www.encodeproject.org/files/ENCFF358EYL/@@download/ENCFF358EYL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF358QXO fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 1 76 paired-ended 1 ENCFF023XRN 2385326731 Bradley Bernstein, Broad 06645ca2ba3b57f5300059720a75bb03 https://www.encodeproject.org/files/ENCFF358QXO/@@download/ENCFF358QXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002AYG/, /files/ENCFF002BCA/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF023XRN fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 1 76 paired-ended 2 ENCFF358QXO 2373702598 Bradley Bernstein, Broad 212c21ce2d6b4bb1c908c2e447dab1d9 https://www.encodeproject.org/files/ENCFF023XRN/@@download/ENCFF023XRN.fastq.gz Illumina HiSeq 2000 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO missing controlled_by ENCFF369UQZ fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 1 36 single-ended 79803952 Bradley Bernstein, Broad 95d50a1b8dfaf320bb723718d8013036 https://www.encodeproject.org/files/ENCFF369UQZ/@@download/ENCFF369UQZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF678IIJ fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 1 36 single-ended 83997484 Bradley Bernstein, Broad 8874111c36737d445fc7d96b3e2c0492 https://www.encodeproject.org/files/ENCFF678IIJ/@@download/ENCFF678IIJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF417PYP fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 1 76 single-ended 2085217875 Bradley Bernstein, Broad 1191fb70f3aaed30fcac2fca2114c0cf https://www.encodeproject.org/files/ENCFF417PYP/@@download/ENCFF417PYP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYG/, /files/ENCFF002BCA/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF497EIW fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 1 76 single-ended 717790294 Bradley Bernstein, Broad 60e70cffac9cc8c3a1a80b2ee720ac16 https://www.encodeproject.org/files/ENCFF497EIW/@@download/ENCFF497EIW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF541LFI fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 1 76 single-ended 666442149 Bradley Bernstein, Broad 05233e0c49b315008d30aa535ea67010 https://www.encodeproject.org/files/ENCFF541LFI/@@download/ENCFF541LFI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF605CPI fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 2 76 single-ended 741489128 Bradley Bernstein, Broad 4f807913f8330139eab6c46976ef590d https://www.encodeproject.org/files/ENCFF605CPI/@@download/ENCFF605CPI.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF315NSQ fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 1 76 single-ended 2115469509 Bradley Bernstein, Broad 0c95028d363439a8cab46c054e6fc649 https://www.encodeproject.org/files/ENCFF315NSQ/@@download/ENCFF315NSQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYG/, /files/ENCFF002BCA/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF820GFT fastq reads ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 2 76 single-ended 681599547 Bradley Bernstein, Broad ad6defaed4791e1c5cb1874fb1d53bbf https://www.encodeproject.org/files/ENCFF820GFT/@@download/ENCFF820GFT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF009RID bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 36 ENCFF497EIW, ENCFF541LFI, ENCFF605CPI, ENCFF807MUK, ENCFF820GFT 880733806 ENCODE Processing Pipeline ee5c956e7de1560b21530dcc10bde8d6 https://www.encodeproject.org/files/ENCFF009RID/@@download/ENCFF009RID.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF523UVF bam unfiltered alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 36 ENCFF497EIW, ENCFF541LFI, ENCFF605CPI, ENCFF643CGH, ENCFF820GFT 1655341799 ENCODE Processing Pipeline 59d8bce0c1009b356d27f02eec0097d4 https://www.encodeproject.org/files/ENCFF523UVF/@@download/ENCFF523UVF.bam GRCh38 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF808AUY bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 36 ENCFF497EIW, ENCFF541LFI, ENCFF605CPI, ENCFF643CGH, ENCFF820GFT 880258573 ENCODE Processing Pipeline 00b0ca219cf9f7cb5ab43789b80596e7 https://www.encodeproject.org/files/ENCFF808AUY/@@download/ENCFF808AUY.bam GRCh38 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF290ZRU bam unfiltered alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF358EYL, ENCFF369UQZ, ENCFF643CGH, ENCFF678IIJ 1349099356 ENCODE Processing Pipeline 3dfbbfbaaed9e68719af61902a257d18 https://www.encodeproject.org/files/ENCFF290ZRU/@@download/ENCFF290ZRU.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF629HGO bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF358EYL, ENCFF369UQZ, ENCFF643CGH, ENCFF678IIJ 651557502 ENCODE Processing Pipeline af6c2c49b6124a6764179a1dd35e5bf7 https://www.encodeproject.org/files/ENCFF629HGO/@@download/ENCFF629HGO.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF139RNS bam unfiltered alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 3 36 ENCFF497EIW, ENCFF541LFI, ENCFF605CPI, ENCFF807MUK, ENCFF820GFT 1647459821 ENCODE Processing Pipeline ff7a98b71b220bd81e184bcc0f87201c https://www.encodeproject.org/files/ENCFF139RNS/@@download/ENCFF139RNS.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF828FLX bam unfiltered alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF358EYL, ENCFF369UQZ, ENCFF678IIJ, ENCFF807MUK 1343292415 ENCODE Processing Pipeline 5e680068951ef73449e36ba2e52d5efe https://www.encodeproject.org/files/ENCFF828FLX/@@download/ENCFF828FLX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF983AFA bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF358EYL, ENCFF369UQZ, ENCFF678IIJ, ENCFF807MUK 651950218 ENCODE Processing Pipeline 3e733419fb07baab7195f9c8774b431b https://www.encodeproject.org/files/ENCFF983AFA/@@download/ENCFF983AFA.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF881AVT bam unfiltered alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF315NSQ, ENCFF358QXO, ENCFF417PYP, ENCFF807MUK 4323628614 ENCODE Processing Pipeline bbc0c3f7ba67393b2b0ea251fce8bfcc https://www.encodeproject.org/files/ENCFF881AVT/@@download/ENCFF881AVT.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF123TRE bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF315NSQ, ENCFF358QXO, ENCFF417PYP, ENCFF643CGH 2466480317 ENCODE Processing Pipeline bf147cef618909a9946581bc83697b86 https://www.encodeproject.org/files/ENCFF123TRE/@@download/ENCFF123TRE.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF396EHK bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF315NSQ, ENCFF358QXO, ENCFF417PYP, ENCFF807MUK 2467110254 ENCODE Processing Pipeline ff5d40f3ff8466a36407fdc6b8be640f https://www.encodeproject.org/files/ENCFF396EHK/@@download/ENCFF396EHK.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF827KVU bam unfiltered alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF315NSQ, ENCFF358QXO, ENCFF417PYP, ENCFF643CGH 4347953090 ENCODE Processing Pipeline 003fef799acf3c4c8d62bed90bd4e356 https://www.encodeproject.org/files/ENCFF827KVU/@@download/ENCFF827KVU.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF251VKL bigWig signal p-value ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP, ENCFF983AFA 1755421362 ENCODE Processing Pipeline 7c51ab1210baaa21965bb1e5d8526268 https://www.encodeproject.org/files/ENCFF251VKL/@@download/ENCFF251VKL.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF750MDG bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP, ENCFF983AFA 7131765 ENCODE Processing Pipeline 613e892f6f5e2cb5f6b894907af541bc https://www.encodeproject.org/files/ENCFF750MDG/@@download/ENCFF750MDG.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF436QPA bigBed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF502WVO 13380753 ENCODE Processing Pipeline a20951a07fdbb9d2702347a953db659a https://www.encodeproject.org/files/ENCFF436QPA/@@download/ENCFF436QPA.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF925BZG bed narrowPeak conservative idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF283OGT, ENCFF502WVO, ENCFF750MDG 18498 ENCODE Processing Pipeline fc563a44fdc34fd63942db56871b71d5 https://www.encodeproject.org/files/ENCFF925BZG/@@download/ENCFF925BZG.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF437UEH bigWig signal p-value ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP 1586004800 ENCODE Processing Pipeline 2f0ca4d2715da16a95549bcfe28f257c https://www.encodeproject.org/files/ENCFF437UEH/@@download/ENCFF437UEH.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF645LFV bigWig fold change over control ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP 1693035065 ENCODE Processing Pipeline e8cf5802aee69e377ba4616060dc0591 https://www.encodeproject.org/files/ENCFF645LFV/@@download/ENCFF645LFV.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF716KZB bigWig fold change over control ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF983AFA 822584618 ENCODE Processing Pipeline 2021e9241571478c8a52cfa08cdde438 https://www.encodeproject.org/files/ENCFF716KZB/@@download/ENCFF716KZB.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF283OGT bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP 6912537 ENCODE Processing Pipeline 4247ed24024f4c1a5c5128388126f2a1 https://www.encodeproject.org/files/ENCFF283OGT/@@download/ENCFF283OGT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF341WSB bigBed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF750MDG 13292756 ENCODE Processing Pipeline b5b442c31160c3b71484cdc67bda950a https://www.encodeproject.org/files/ENCFF341WSB/@@download/ENCFF341WSB.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF468ICP bigWig signal p-value ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF983AFA 1139978116 ENCODE Processing Pipeline 2aa46ed6091376cc0e3395a3cb3f00ea https://www.encodeproject.org/files/ENCFF468ICP/@@download/ENCFF468ICP.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF691XVY bigWig fold change over control ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP, ENCFF983AFA 1852229128 ENCODE Processing Pipeline 630e53f515aa5d074af9cd6c15c83148 https://www.encodeproject.org/files/ENCFF691XVY/@@download/ENCFF691XVY.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF502WVO bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF983AFA 5704662 ENCODE Processing Pipeline 58578ac259133d6006f8943a34a9f144 https://www.encodeproject.org/files/ENCFF502WVO/@@download/ENCFF502WVO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF806HPC bigBed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF283OGT 13446768 ENCODE Processing Pipeline d8cfa1139ee533cad3048979c43dc0b0 https://www.encodeproject.org/files/ENCFF806HPC/@@download/ENCFF806HPC.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF364XPB bigBed narrowPeak conservative idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF925BZG 131684 ENCODE Processing Pipeline de2109801c0523fdaaf8f853be247aa9 https://www.encodeproject.org/files/ENCFF364XPB/@@download/ENCFF364XPB.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF444QJT bed narrowPeak optimal idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF001TDO, ENCFF283OGT, ENCFF502WVO, ENCFF750MDG 24131 ENCODE Processing Pipeline e9c7996dbbdf5f9133abc392aadbdfe7 https://www.encodeproject.org/files/ENCFF444QJT/@@download/ENCFF444QJT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF267YPH bigBed narrowPeak optimal idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF444QJT 132138 ENCODE Processing Pipeline 9cb7ceeb85758af2c7c18e76b98d4189 https://www.encodeproject.org/files/ENCFF267YPH/@@download/ENCFF267YPH.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF017BYP bigWig signal p-value ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF629HGO 1162194673 ENCODE Processing Pipeline 6f9c4d129768ac2699331f2b50e5dbd1 https://www.encodeproject.org/files/ENCFF017BYP/@@download/ENCFF017BYP.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF818ASX bigWig signal p-value ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF046QZN, ENCFF123TRE, ENCFF537BWA 1514838037 ENCODE Processing Pipeline dfed57750d51f5d9c1127aba863690c8 https://www.encodeproject.org/files/ENCFF818ASX/@@download/ENCFF818ASX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF309VNF bigWig fold change over control ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF046QZN, ENCFF123TRE, ENCFF537BWA, ENCFF629HGO 1890847414 ENCODE Processing Pipeline fef1572f95b4e3850f812dd25dc666b4 https://www.encodeproject.org/files/ENCFF309VNF/@@download/ENCFF309VNF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF367TDO bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF629HGO 5834043 ENCODE Processing Pipeline ed3ade648c923829861b17d365ef7614 https://www.encodeproject.org/files/ENCFF367TDO/@@download/ENCFF367TDO.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF369ADL bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF046QZN, ENCFF123TRE, ENCFF537BWA 6911585 ENCODE Processing Pipeline ba1ba914a78f9fa48ceb3e2734ef5cb1 https://www.encodeproject.org/files/ENCFF369ADL/@@download/ENCFF369ADL.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF172NVW bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF046QZN, ENCFF123TRE, ENCFF537BWA, ENCFF629HGO 7109363 ENCODE Processing Pipeline 41be23f25d6a8c2b96c687d612d88415 https://www.encodeproject.org/files/ENCFF172NVW/@@download/ENCFF172NVW.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF231NVG bigBed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF369ADL 13449995 ENCODE Processing Pipeline 83a6d401c33f4e993a9f633a1453363d https://www.encodeproject.org/files/ENCFF231NVG/@@download/ENCFF231NVG.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF236MWG bed narrowPeak optimal idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF172NVW, ENCFF367TDO, ENCFF369ADL, ENCFF419RSJ 24689 ENCODE Processing Pipeline 15b97f63559eb13bc4273313f1cc6187 https://www.encodeproject.org/files/ENCFF236MWG/@@download/ENCFF236MWG.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF032QHX bigWig signal p-value ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF046QZN, ENCFF123TRE, ENCFF537BWA, ENCFF629HGO 1637256954 ENCODE Processing Pipeline c26efc2649ce7897af6b317e3c11568d https://www.encodeproject.org/files/ENCFF032QHX/@@download/ENCFF032QHX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF628HPJ bigWig fold change over control ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF046QZN, ENCFF123TRE, ENCFF537BWA 1692834707 ENCODE Processing Pipeline 104cf142e6718379f89f67f9bee8c234 https://www.encodeproject.org/files/ENCFF628HPJ/@@download/ENCFF628HPJ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF232OMT bigBed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF367TDO 13427975 ENCODE Processing Pipeline 92c2c6c75b1bb9dd1834e90db74b1471 https://www.encodeproject.org/files/ENCFF232OMT/@@download/ENCFF232OMT.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF904LCU bigBed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF172NVW 13326385 ENCODE Processing Pipeline d38a48ab02e5073fda5fb70b96d4e234 https://www.encodeproject.org/files/ENCFF904LCU/@@download/ENCFF904LCU.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF343FCF bigWig fold change over control ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF629HGO 817839708 ENCODE Processing Pipeline 3fe544bbbd5f96c9a3c1a1e783b90648 https://www.encodeproject.org/files/ENCFF343FCF/@@download/ENCFF343FCF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF851XLZ bigBed narrowPeak conservative idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF249MYB 132548 ENCODE Processing Pipeline 9bb5dfd18e6ff974adff9b671da6a988 https://www.encodeproject.org/files/ENCFF851XLZ/@@download/ENCFF851XLZ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF249MYB bed narrowPeak conservative idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF172NVW, ENCFF367TDO, ENCFF369ADL, ENCFF419RSJ 18485 ENCODE Processing Pipeline 88ab3da61aded7f33cdd9e96c841b1cd https://www.encodeproject.org/files/ENCFF249MYB/@@download/ENCFF249MYB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF395KPU bigBed narrowPeak optimal idr thresholded peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1, 2 ENCFF236MWG 134054 ENCODE Processing Pipeline d479f2b58f68b874d6bf2e1eceb55fa6 https://www.encodeproject.org/files/ENCFF395KPU/@@download/ENCFF395KPU.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF950MHM fastq reads ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF858GIB 2957792879 Michael Snyder, Stanford 1e729067d1065850283c8cc12eaa7bd0 SRA:SRR6213006 https://www.encodeproject.org/files/ENCFF950MHM/@@download/ENCFF950MHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF273KUS/ released mild to moderate bottlenecking, moderate library complexity ENCFF858GIB fastq reads ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF950MHM 2987345649 Michael Snyder, Stanford 8511ee5d01e78ab4994656514381e787 SRA:SRR6213006 https://www.encodeproject.org/files/ENCFF858GIB/@@download/ENCFF858GIB.fastq.gz Illumina HiSeq 2000 /files/ENCFF466WDC/ released mild to moderate bottlenecking, moderate library complexity ENCFF741YSW bam unfiltered alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF807MUK, ENCFF858GIB, ENCFF950MHM 6153100915 ENCODE Processing Pipeline 3746f64187212d54b9d67c1ab2cfdc29 https://www.encodeproject.org/files/ENCFF741YSW/@@download/ENCFF741YSW.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF528MPG bam unfiltered alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF643CGH, ENCFF858GIB, ENCFF950MHM 6160180692 ENCODE Processing Pipeline 0394645b970ce70a9591fad78d70015c https://www.encodeproject.org/files/ENCFF528MPG/@@download/ENCFF528MPG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF495OAG bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF643CGH, ENCFF858GIB, ENCFF950MHM 4467101054 ENCODE Processing Pipeline 30e68c671f86b8f064cbb082a24c0449 https://www.encodeproject.org/files/ENCFF495OAG/@@download/ENCFF495OAG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF091BWQ bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF807MUK, ENCFF858GIB, ENCFF950MHM 4462607880 ENCODE Processing Pipeline 03e4223b5b96e667fb9dca25e8777372 https://www.encodeproject.org/files/ENCFF091BWQ/@@download/ENCFF091BWQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF199YWX fastq reads ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF857ZPD 4598754686 Michael Snyder, Stanford b991d478872e77e14ab206eae633421d SRA:SRR6213007 https://www.encodeproject.org/files/ENCFF199YWX/@@download/ENCFF199YWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF872HTM/ released mild to moderate bottlenecking, moderate library complexity ENCFF857ZPD fastq reads ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF199YWX 4643384425 Michael Snyder, Stanford 245fd03c91161ca305eb7fff4a6ece38 SRA:SRR6213007 https://www.encodeproject.org/files/ENCFF857ZPD/@@download/ENCFF857ZPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF996TKV/ released mild to moderate bottlenecking, moderate library complexity ENCFF582JDA bam unfiltered alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF199YWX, ENCFF807MUK, ENCFF857ZPD 9056807552 ENCODE Processing Pipeline efe50906a5602b6aa8415148f27f2102 https://www.encodeproject.org/files/ENCFF582JDA/@@download/ENCFF582JDA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF136WLN bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF199YWX, ENCFF807MUK, ENCFF857ZPD 7442027124 ENCODE Processing Pipeline 75e7194e2fab591c51a8c71d0430048c https://www.encodeproject.org/files/ENCFF136WLN/@@download/ENCFF136WLN.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF395ZXI bam unfiltered alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF199YWX, ENCFF643CGH, ENCFF857ZPD 9076938667 ENCODE Processing Pipeline 1dbf3df24af29be5eef22404633fd448 https://www.encodeproject.org/files/ENCFF395ZXI/@@download/ENCFF395ZXI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF447CUQ bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF199YWX, ENCFF643CGH, ENCFF857ZPD 7452990700 ENCODE Processing Pipeline e25648cc64cb0a39558a81c67031617b https://www.encodeproject.org/files/ENCFF447CUQ/@@download/ENCFF447CUQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF477WNO bigWig fold change over control ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF006HDB, ENCFF091BWQ, ENCFF357UZL 1613347285 ENCODE Processing Pipeline 80ed4daff3c24b89cb94dd88e7f824dd https://www.encodeproject.org/files/ENCFF477WNO/@@download/ENCFF477WNO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF966FSW bigWig fold change over control ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF006HDB, ENCFF136WLN, ENCFF357UZL 1893112074 ENCODE Processing Pipeline cd4ea2fd0a9cdeb96a4dbe98d5d1c2b5 https://www.encodeproject.org/files/ENCFF966FSW/@@download/ENCFF966FSW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF941GCT bigWig fold change over control ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF006HDB, ENCFF091BWQ, ENCFF136WLN, ENCFF357UZL 2272592056 ENCODE Processing Pipeline 6b5285827ce96f394628850a9b432c70 https://www.encodeproject.org/files/ENCFF941GCT/@@download/ENCFF941GCT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF536CTG bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF006HDB, ENCFF091BWQ, ENCFF357UZL 6924968 ENCODE Processing Pipeline c316c423c4fe09a672d22c1bbe4350ed https://www.encodeproject.org/files/ENCFF536CTG/@@download/ENCFF536CTG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF785JEO bigWig signal p-value ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF006HDB, ENCFF091BWQ, ENCFF357UZL 1405080066 ENCODE Processing Pipeline a9ef5f7fe389f0d5d2eb86db2711df8d https://www.encodeproject.org/files/ENCFF785JEO/@@download/ENCFF785JEO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF514JGP bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF006HDB, ENCFF091BWQ, ENCFF136WLN, ENCFF357UZL 7109650 ENCODE Processing Pipeline 2cc6a1b77627724a718a9018be8032a5 https://www.encodeproject.org/files/ENCFF514JGP/@@download/ENCFF514JGP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF304IDM bed narrowPeak optimal idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF247RAX, ENCFF514JGP, ENCFF536CTG 1543624 ENCODE Processing Pipeline 56d93fec54a90ac5c5269b5284cc2f20 https://www.encodeproject.org/files/ENCFF304IDM/@@download/ENCFF304IDM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF687GKW bigWig signal p-value ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF006HDB, ENCFF136WLN, ENCFF357UZL 1876474375 ENCODE Processing Pipeline c77d7379dfd7c37951f21c1b00d2c801 https://www.encodeproject.org/files/ENCFF687GKW/@@download/ENCFF687GKW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF045ZVK bigWig signal p-value ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF006HDB, ENCFF091BWQ, ENCFF136WLN, ENCFF357UZL 1825957410 ENCODE Processing Pipeline 5be713dedbdd0e769fa8dce305d4cf8d https://www.encodeproject.org/files/ENCFF045ZVK/@@download/ENCFF045ZVK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF644MXR bigBed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF247RAX 13302076 ENCODE Processing Pipeline 7128c76ff5b3b77735877046f7504940 https://www.encodeproject.org/files/ENCFF644MXR/@@download/ENCFF644MXR.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF475IZO bed narrowPeak conservative idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF247RAX, ENCFF514JGP, ENCFF536CTG 1513147 ENCODE Processing Pipeline 0499890f7ca37fc0bf89faed2642b8bb https://www.encodeproject.org/files/ENCFF475IZO/@@download/ENCFF475IZO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF905OTB bigBed narrowPeak optimal idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF304IDM 3065726 ENCODE Processing Pipeline 119f4c84c54990950361097a7d07df83 https://www.encodeproject.org/files/ENCFF905OTB/@@download/ENCFF905OTB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF640ZZB bigBed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF536CTG 13273040 ENCODE Processing Pipeline 9e4775e7e20d38e77255f7d0d8dcaf80 https://www.encodeproject.org/files/ENCFF640ZZB/@@download/ENCFF640ZZB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF335JJO bigBed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF514JGP 13285039 ENCODE Processing Pipeline 3b4e57e8306bcb5b7ee4e74c4fa8b0c5 https://www.encodeproject.org/files/ENCFF335JJO/@@download/ENCFF335JJO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF927MCW bigBed narrowPeak conservative idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF475IZO 2970488 ENCODE Processing Pipeline 202876b85841758402b22b90c60f36ec https://www.encodeproject.org/files/ENCFF927MCW/@@download/ENCFF927MCW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF247RAX bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF006HDB, ENCFF136WLN, ENCFF357UZL 7019787 ENCODE Processing Pipeline c551f013dad997bd272a6f5374d96e56 https://www.encodeproject.org/files/ENCFF247RAX/@@download/ENCFF247RAX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF277EOW bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF367CAA, ENCFF495OAG, ENCFF567SBX 6931774 ENCODE Processing Pipeline db96c49e905952d07516f746148ef9e5 https://www.encodeproject.org/files/ENCFF277EOW/@@download/ENCFF277EOW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF551HQP bigBed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF190JWE 13318533 ENCODE Processing Pipeline 108b0ba90cec7d601266dd172fe67bf3 https://www.encodeproject.org/files/ENCFF551HQP/@@download/ENCFF551HQP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF543QNU bigWig signal p-value ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF367CAA, ENCFF447CUQ, ENCFF495OAG, ENCFF567SBX 2158746572 ENCODE Processing Pipeline 73681c553872317292f9aef5ff6b0e35 https://www.encodeproject.org/files/ENCFF543QNU/@@download/ENCFF543QNU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF433QKI bigWig fold change over control ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF367CAA, ENCFF447CUQ, ENCFF567SBX 1923037541 ENCODE Processing Pipeline cadb2109abbc168e52e3cb28e8727bfb https://www.encodeproject.org/files/ENCFF433QKI/@@download/ENCFF433QKI.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF533STR bigWig signal p-value ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF367CAA, ENCFF495OAG, ENCFF567SBX 1514432862 ENCODE Processing Pipeline a5d1083b87afc12035f1cb2917e0c4dc https://www.encodeproject.org/files/ENCFF533STR/@@download/ENCFF533STR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF916ZAJ bigWig fold change over control ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF367CAA, ENCFF495OAG, ENCFF567SBX 1613993246 ENCODE Processing Pipeline 6d03e27f8f56c93c9f5ce10a57a2bf7b https://www.encodeproject.org/files/ENCFF916ZAJ/@@download/ENCFF916ZAJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF968YPW bigWig signal p-value ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF367CAA, ENCFF447CUQ, ENCFF567SBX 1546793323 ENCODE Processing Pipeline 2f09321bc29e45c1e9df638a7cf4435d https://www.encodeproject.org/files/ENCFF968YPW/@@download/ENCFF968YPW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF807GXU bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF367CAA, ENCFF447CUQ, ENCFF495OAG, ENCFF567SBX 7118129 ENCODE Processing Pipeline 74bce089b9d34618fcfc84f04011fb49 https://www.encodeproject.org/files/ENCFF807GXU/@@download/ENCFF807GXU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF516XAH bigBed narrowPeak optimal idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF078XBU 3099714 ENCODE Processing Pipeline 7823e8ea296328d44eddf2b0f6447c7a https://www.encodeproject.org/files/ENCFF516XAH/@@download/ENCFF516XAH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF031ROV bigWig fold change over control ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF367CAA, ENCFF447CUQ, ENCFF495OAG, ENCFF567SBX 2279644901 ENCODE Processing Pipeline 107572769839c4db41a2d572e1805dcd https://www.encodeproject.org/files/ENCFF031ROV/@@download/ENCFF031ROV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF190JWE bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF367CAA, ENCFF447CUQ, ENCFF567SBX 7033045 ENCODE Processing Pipeline afd3d0e400168b6aedd13e553a2e81fa https://www.encodeproject.org/files/ENCFF190JWE/@@download/ENCFF190JWE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF898XSP bigBed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF277EOW 13292171 ENCODE Processing Pipeline 305ba04fda69b9d501c87d4b8115d25f https://www.encodeproject.org/files/ENCFF898XSP/@@download/ENCFF898XSP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF078XBU bed narrowPeak optimal idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF190JWE, ENCFF277EOW, ENCFF419RSJ, ENCFF807GXU 1559659 ENCODE Processing Pipeline c37895bebaccb2acfe18548f8e8d8c75 https://www.encodeproject.org/files/ENCFF078XBU/@@download/ENCFF078XBU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF963ZEF bigBed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF807GXU 13311710 ENCODE Processing Pipeline 0ee9cb9fc74fb6111c18dd8515f60251 https://www.encodeproject.org/files/ENCFF963ZEF/@@download/ENCFF963ZEF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF766AVW bed narrowPeak conservative idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF190JWE, ENCFF277EOW, ENCFF419RSJ, ENCFF807GXU 1517670 ENCODE Processing Pipeline 3264084a9db8b2661d728d125cf95855 https://www.encodeproject.org/files/ENCFF766AVW/@@download/ENCFF766AVW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF106XYS bigBed narrowPeak conservative idr thresholded peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF766AVW 2984078 ENCODE Processing Pipeline 3ae283f5c511236b989b1534a01cc147 https://www.encodeproject.org/files/ENCFF106XYS/@@download/ENCFF106XYS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF441XRJ fastq reads ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF382JJC 2778807558 Michael Snyder, Stanford 9599651956a9e70efc77b2621cd6eeea SRA:SRR5111963 https://www.encodeproject.org/files/ENCFF441XRJ/@@download/ENCFF441XRJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF209LAN fastq reads ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF027IUI 2619165252 Michael Snyder, Stanford 27b07474882e6aaadfb7af79804f293c SRA:SRR5111962 https://www.encodeproject.org/files/ENCFF209LAN/@@download/ENCFF209LAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF382JJC fastq reads ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF441XRJ 2860294708 Michael Snyder, Stanford b0f4b5d43ea32a93806239479ab681c1 SRA:SRR5111963 https://www.encodeproject.org/files/ENCFF382JJC/@@download/ENCFF382JJC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF027IUI fastq reads ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF209LAN 2611525283 Michael Snyder, Stanford 47795f39b033edad7fef9b0007c5a28c SRA:SRR5111962 https://www.encodeproject.org/files/ENCFF027IUI/@@download/ENCFF027IUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF898DVS bam unfiltered alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF027IUI, ENCFF209LAN, ENCFF807MUK 5767931602 ENCODE Processing Pipeline fb53b57a42948ef2a229d0ffd2234d6c https://www.encodeproject.org/files/ENCFF898DVS/@@download/ENCFF898DVS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF912YSO bam unfiltered alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF382JJC, ENCFF441XRJ, ENCFF807MUK 6166714518 ENCODE Processing Pipeline cabdc7fc3128ced4b33d023bd00d7106 https://www.encodeproject.org/files/ENCFF912YSO/@@download/ENCFF912YSO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF830UTZ bam unfiltered alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF027IUI, ENCFF209LAN, ENCFF643CGH 5774156433 ENCODE Processing Pipeline 939855c5d39ddc80b43841b5b3cb4b61 https://www.encodeproject.org/files/ENCFF830UTZ/@@download/ENCFF830UTZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF652WXQ bam unfiltered alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF382JJC, ENCFF441XRJ, ENCFF643CGH 6171360967 ENCODE Processing Pipeline 72f0a0a730fb65ae20f206a066993265 https://www.encodeproject.org/files/ENCFF652WXQ/@@download/ENCFF652WXQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF753SVR bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF027IUI, ENCFF209LAN, ENCFF807MUK 4924751558 ENCODE Processing Pipeline 661cfd7fa488adb0b1761200cb375291 https://www.encodeproject.org/files/ENCFF753SVR/@@download/ENCFF753SVR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF680DKU bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF382JJC, ENCFF441XRJ, ENCFF807MUK 5016173362 ENCODE Processing Pipeline addbe4f3c2fe38ece29918865f43c355 https://www.encodeproject.org/files/ENCFF680DKU/@@download/ENCFF680DKU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF223SSU bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF382JJC, ENCFF441XRJ, ENCFF643CGH 5018690995 ENCODE Processing Pipeline b6d5656d17e264666828bb26b2776748 https://www.encodeproject.org/files/ENCFF223SSU/@@download/ENCFF223SSU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF267HWD bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF027IUI, ENCFF209LAN, ENCFF643CGH 4927482246 ENCODE Processing Pipeline af69b75e60c70bfe03601ce19486b8b4 https://www.encodeproject.org/files/ENCFF267HWD/@@download/ENCFF267HWD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF929WJX bigWig signal p-value ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF680DKU 1427937888 ENCODE Processing Pipeline 7bdbe764e82719d917fcc271720900ef https://www.encodeproject.org/files/ENCFF929WJX/@@download/ENCFF929WJX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF015LZS bigWig signal p-value ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF753SVR 1366837921 ENCODE Processing Pipeline 595d37972ba9261d2ab087286cde8e4f https://www.encodeproject.org/files/ENCFF015LZS/@@download/ENCFF015LZS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF402EBW bigWig signal p-value ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF680DKU, ENCFF753SVR 1994659166 ENCODE Processing Pipeline b49e4af25fd28ac4037e8874a0c6cca4 https://www.encodeproject.org/files/ENCFF402EBW/@@download/ENCFF402EBW.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF524QET bigWig fold change over control ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF680DKU 1428618357 ENCODE Processing Pipeline 71774ddf1ef55bad8fd13f095e02364d https://www.encodeproject.org/files/ENCFF524QET/@@download/ENCFF524QET.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF677TLA bigWig fold change over control ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF753SVR 1430757478 ENCODE Processing Pipeline 440a290e8abc1d4f227ad3b94dbc1336 https://www.encodeproject.org/files/ENCFF677TLA/@@download/ENCFF677TLA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF448SWT bigWig fold change over control ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF680DKU, ENCFF753SVR 2025042984 ENCODE Processing Pipeline 49530a09b832bbcaaf33179977499594 https://www.encodeproject.org/files/ENCFF448SWT/@@download/ENCFF448SWT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF830EGQ bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF680DKU 6892794 ENCODE Processing Pipeline acd4c2bfbfa4e26e52ec9dc218939e3b https://www.encodeproject.org/files/ENCFF830EGQ/@@download/ENCFF830EGQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF971RUU bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF753SVR 6964237 ENCODE Processing Pipeline 843c3c9ee2b7352046c96ff409115ff1 https://www.encodeproject.org/files/ENCFF971RUU/@@download/ENCFF971RUU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF708UJT bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF680DKU, ENCFF753SVR 7242429 ENCODE Processing Pipeline a0d46e60bcfc5544fe5aaab9e64e7429 https://www.encodeproject.org/files/ENCFF708UJT/@@download/ENCFF708UJT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF166XDO bigBed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF830EGQ 11477564 ENCODE Processing Pipeline 92137c0948587990f486c39302951cd0 https://www.encodeproject.org/files/ENCFF166XDO/@@download/ENCFF166XDO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF238UNC bigBed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF971RUU 11432282 ENCODE Processing Pipeline e39c5d29e11302817e0da76a94daa93e https://www.encodeproject.org/files/ENCFF238UNC/@@download/ENCFF238UNC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF523UNI bigBed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF708UJT 13561744 ENCODE Processing Pipeline 259c79566ec57715e43cd0d05282c7c7 https://www.encodeproject.org/files/ENCFF523UNI/@@download/ENCFF523UNI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF380RAW bed narrowPeak conservative idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF708UJT, ENCFF830EGQ, ENCFF971RUU 556059 ENCODE Processing Pipeline 23c6868503a3ad3f14a29fa782ba17f3 https://www.encodeproject.org/files/ENCFF380RAW/@@download/ENCFF380RAW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF438BQV bigBed narrowPeak conservative idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF380RAW 966106 ENCODE Processing Pipeline b87cf8a120e4e8f10c5979c8a9bcda88 https://www.encodeproject.org/files/ENCFF438BQV/@@download/ENCFF438BQV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF290YYY bed narrowPeak optimal idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF708UJT, ENCFF830EGQ, ENCFF971RUU 652380 ENCODE Processing Pipeline 066f05eafb0304225406a602a469089b https://www.encodeproject.org/files/ENCFF290YYY/@@download/ENCFF290YYY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF683DCX bigBed narrowPeak optimal idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF290YYY 1093818 ENCODE Processing Pipeline 5aef9ded949cc807d639f66a905a66b8 https://www.encodeproject.org/files/ENCFF683DCX/@@download/ENCFF683DCX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF393KIP bigWig signal p-value ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF223SSU 1392248732 ENCODE Processing Pipeline 80b9f58ad2607bf1d1769c7499a8863b https://www.encodeproject.org/files/ENCFF393KIP/@@download/ENCFF393KIP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF041IMQ bigWig signal p-value ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF267HWD 1416533199 ENCODE Processing Pipeline 82185f23b6a0b69deeac4e755e7db578 https://www.encodeproject.org/files/ENCFF041IMQ/@@download/ENCFF041IMQ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF298JUI bigWig signal p-value ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF223SSU, ENCFF267HWD 1996284357 ENCODE Processing Pipeline df3032571cf22cc5c4b7c562609cf897 https://www.encodeproject.org/files/ENCFF298JUI/@@download/ENCFF298JUI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF649OWA bigWig fold change over control ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF223SSU 1426002607 ENCODE Processing Pipeline 549fb1e1fcaa0bd0eb8eadfc14044779 https://www.encodeproject.org/files/ENCFF649OWA/@@download/ENCFF649OWA.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF759TYL bigWig fold change over control ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF267HWD 1431865659 ENCODE Processing Pipeline 9bc7c1bd78d01bd07497eabb102f77dd https://www.encodeproject.org/files/ENCFF759TYL/@@download/ENCFF759TYL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF887JZO bigWig fold change over control ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF223SSU, ENCFF267HWD 2025848889 ENCODE Processing Pipeline 1bad6edb24c4b667f5fef4a8e23f39db https://www.encodeproject.org/files/ENCFF887JZO/@@download/ENCFF887JZO.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF268BIQ bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF267HWD 6886168 ENCODE Processing Pipeline 7bebf63a9ab70a9db521923b59c15d65 https://www.encodeproject.org/files/ENCFF268BIQ/@@download/ENCFF268BIQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF640WZZ bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF223SSU, ENCFF267HWD 7234213 ENCODE Processing Pipeline 310ca3a03a2e5cfa7da4cf2afbe2abb2 https://www.encodeproject.org/files/ENCFF640WZZ/@@download/ENCFF640WZZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF714VZJ bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF223SSU 6801181 ENCODE Processing Pipeline ea60356d30effc54ab2ee4c28e3406f7 https://www.encodeproject.org/files/ENCFF714VZJ/@@download/ENCFF714VZJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF175YNR bigBed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF714VZJ 11493364 ENCODE Processing Pipeline bd4013591076555836305ee5c9defb77 https://www.encodeproject.org/files/ENCFF175YNR/@@download/ENCFF175YNR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF879RAN bigBed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF268BIQ 11450179 ENCODE Processing Pipeline b9945c11fdf10cfec15ee70e2b522a91 https://www.encodeproject.org/files/ENCFF879RAN/@@download/ENCFF879RAN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF331IXQ bigBed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF640WZZ 13581202 ENCODE Processing Pipeline 69d5aefbe9cba896b20f570b30fc0b61 https://www.encodeproject.org/files/ENCFF331IXQ/@@download/ENCFF331IXQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF335ZHH bigBed narrowPeak conservative idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF032HQY 973812 ENCODE Processing Pipeline 4c02f8a1acf8c66a169a4640c2a4c720 https://www.encodeproject.org/files/ENCFF335ZHH/@@download/ENCFF335ZHH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF032HQY bed narrowPeak conservative idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF268BIQ, ENCFF419RSJ, ENCFF640WZZ, ENCFF714VZJ 560690 ENCODE Processing Pipeline f2ce8ba857ed128c5cb5ce10d3b74f5f https://www.encodeproject.org/files/ENCFF032HQY/@@download/ENCFF032HQY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF825PWD bed narrowPeak optimal idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF268BIQ, ENCFF419RSJ, ENCFF640WZZ, ENCFF714VZJ 648079 ENCODE Processing Pipeline 1c4e72148c2d4ca702bbbcec9db87a0d https://www.encodeproject.org/files/ENCFF825PWD/@@download/ENCFF825PWD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF862NOI bigBed narrowPeak optimal idr thresholded peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF825PWD 1090000 ENCODE Processing Pipeline 3032adcf134bd743c8e9bd6527054bc2 https://www.encodeproject.org/files/ENCFF862NOI/@@download/ENCFF862NOI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF360UUK bam unfiltered alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 100 ENCFF112IGA, ENCFF302OWI, ENCFF807MUK 5753257054 ENCODE Processing Pipeline 4ada1f0fd2a3f5f41b9cc2addc3cf801 https://www.encodeproject.org/files/ENCFF360UUK/@@download/ENCFF360UUK.bam hg19 released low read depth, antibody characterized with exemption ENCFF923GCZ bam unfiltered alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 100 ENCFF256BLE, ENCFF513AFY, ENCFF807MUK 3349528489 ENCODE Processing Pipeline 129a84d6554f4ebdd1997df076a1acf6 https://www.encodeproject.org/files/ENCFF923GCZ/@@download/ENCFF923GCZ.bam hg19 released low read depth, antibody characterized with exemption ENCFF513AFY fastq reads ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 1 100 paired-ended 1 ENCFF256BLE 1458303186 Michael Snyder, Stanford 94818cffe6c93f4180b19c8d67dd5fe1 SRA:SRR5111224 https://www.encodeproject.org/files/ENCFF513AFY/@@download/ENCFF513AFY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth, antibody characterized with exemption ENCFF302OWI fastq reads ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 1 100 paired-ended 2 ENCFF112IGA 2674444982 Michael Snyder, Stanford ae246d33423afc810e7e73d964979f81 SRA:SRR5111223 https://www.encodeproject.org/files/ENCFF302OWI/@@download/ENCFF302OWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth, antibody characterized with exemption ENCFF256BLE fastq reads ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 1 100 paired-ended 2 ENCFF513AFY 1532539854 Michael Snyder, Stanford df40de2b47e04c2a0766328c3fa45429 SRA:SRR5111224 https://www.encodeproject.org/files/ENCFF256BLE/@@download/ENCFF256BLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth, antibody characterized with exemption ENCFF112IGA fastq reads ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 1 100 paired-ended 1 ENCFF302OWI 2571466858 Michael Snyder, Stanford 7e4063348d974033489ed29e4b70516d SRA:SRR5111223 https://www.encodeproject.org/files/ENCFF112IGA/@@download/ENCFF112IGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth, antibody characterized with exemption ENCFF737QLL bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 100 ENCFF256BLE, ENCFF513AFY, ENCFF807MUK 3013115466 ENCODE Processing Pipeline 177612309f4c13c4f497fd2a078e8bce https://www.encodeproject.org/files/ENCFF737QLL/@@download/ENCFF737QLL.bam hg19 released low read depth, antibody characterized with exemption ENCFF606HVQ bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 100 ENCFF112IGA, ENCFF302OWI, ENCFF807MUK 4598364230 ENCODE Processing Pipeline bb1726a42f98048a56f582105d8eee32 https://www.encodeproject.org/files/ENCFF606HVQ/@@download/ENCFF606HVQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF296XDP bigWig signal p-value ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF581ZJL, ENCFF737QLL 974270306 ENCODE Processing Pipeline ca08ff03c2d6ab06d00df37981d86ba2 https://www.encodeproject.org/files/ENCFF296XDP/@@download/ENCFF296XDP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF876KLJ bigWig signal p-value ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF051LWI, ENCFF606HVQ 1074895325 ENCODE Processing Pipeline e98466171e6699b54290d971122fbd4a https://www.encodeproject.org/files/ENCFF876KLJ/@@download/ENCFF876KLJ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF524ERC bigWig signal p-value ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF606HVQ, ENCFF737QLL 2033181168 ENCODE Processing Pipeline 5bc5001d819ea64f2198e551d2b40140 https://www.encodeproject.org/files/ENCFF524ERC/@@download/ENCFF524ERC.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF663JGI bigWig fold change over control ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF581ZJL, ENCFF737QLL 1027291478 ENCODE Processing Pipeline b19c1024c41c59a6741899e6963701d6 https://www.encodeproject.org/files/ENCFF663JGI/@@download/ENCFF663JGI.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF123YOS bigWig fold change over control ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF051LWI, ENCFF606HVQ 1203073383 ENCODE Processing Pipeline ef52b1cc53330ff56b3ec43a664b8f8d https://www.encodeproject.org/files/ENCFF123YOS/@@download/ENCFF123YOS.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF648GCQ bigWig fold change over control ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF606HVQ, ENCFF737QLL 2024050708 ENCODE Processing Pipeline 730b5468a2778075746266f7868cf1b4 https://www.encodeproject.org/files/ENCFF648GCQ/@@download/ENCFF648GCQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF385LTD bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF051LWI, ENCFF606HVQ 7102147 ENCODE Processing Pipeline fd18be84207ef924b9342b60af421079 https://www.encodeproject.org/files/ENCFF385LTD/@@download/ENCFF385LTD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF409HKO bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF581ZJL, ENCFF737QLL 7041480 ENCODE Processing Pipeline 03f4452079d0de2dd45f193dde177e9a https://www.encodeproject.org/files/ENCFF409HKO/@@download/ENCFF409HKO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF767WBP bigBed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF409HKO 12314344 ENCODE Processing Pipeline be5fc8dc12e350450f8f138dfa2d8f96 https://www.encodeproject.org/files/ENCFF767WBP/@@download/ENCFF767WBP.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF264KUV bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF606HVQ, ENCFF737QLL 7112874 ENCODE Processing Pipeline f02236fa69e0de342ead26e968d2998a https://www.encodeproject.org/files/ENCFF264KUV/@@download/ENCFF264KUV.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF460NRN bigBed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF385LTD 12302498 ENCODE Processing Pipeline cbe64108ef5876a25d80e3b03ee2bdad https://www.encodeproject.org/files/ENCFF460NRN/@@download/ENCFF460NRN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF881IOM bigBed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF264KUV 12111706 ENCODE Processing Pipeline 6d5e3320495651e87ba07e59d25315d9 https://www.encodeproject.org/files/ENCFF881IOM/@@download/ENCFF881IOM.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF761ABS bam unfiltered alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 100 ENCFF256BLE, ENCFF513AFY, ENCFF643CGH 3351841399 ENCODE Processing Pipeline 5d49dc980c3402fa560a35c255ffd33a https://www.encodeproject.org/files/ENCFF761ABS/@@download/ENCFF761ABS.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF847GWD bam unfiltered alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 100 ENCFF112IGA, ENCFF302OWI, ENCFF643CGH 5757453772 ENCODE Processing Pipeline 0199ed89746200026fead9975147b214 https://www.encodeproject.org/files/ENCFF847GWD/@@download/ENCFF847GWD.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF702WHX bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 100 ENCFF256BLE, ENCFF513AFY, ENCFF643CGH 3014585643 ENCODE Processing Pipeline a30014b6c0bfdbf98db757d796412f93 https://www.encodeproject.org/files/ENCFF702WHX/@@download/ENCFF702WHX.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF795OAZ bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 100 ENCFF112IGA, ENCFF302OWI, ENCFF643CGH 4600461119 ENCODE Processing Pipeline 4bc2d9772a809a74c5d729cf060ed5ad https://www.encodeproject.org/files/ENCFF795OAZ/@@download/ENCFF795OAZ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF738ORJ bigWig signal p-value ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF702WHX, ENCFF910IKB 1092272011 ENCODE Processing Pipeline 8b1bfeb40e5bdcccebf582e4ddaa670c https://www.encodeproject.org/files/ENCFF738ORJ/@@download/ENCFF738ORJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF709NLW bigWig signal p-value ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF227IZS, ENCFF795OAZ 1245493588 ENCODE Processing Pipeline d5664898b6afe2ba4da3caf5a10560c2 https://www.encodeproject.org/files/ENCFF709NLW/@@download/ENCFF709NLW.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF319CGE bigWig signal p-value ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF227IZS, ENCFF702WHX, ENCFF795OAZ, ENCFF910IKB 1860921677 ENCODE Processing Pipeline 36632812c1780b9345efcd9de64f1343 https://www.encodeproject.org/files/ENCFF319CGE/@@download/ENCFF319CGE.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF880ERG bigWig fold change over control ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF702WHX, ENCFF910IKB 1016763281 ENCODE Processing Pipeline 741c2a0117612909eac6dce4f30db588 https://www.encodeproject.org/files/ENCFF880ERG/@@download/ENCFF880ERG.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF066HHH bigWig fold change over control ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF227IZS, ENCFF795OAZ 1169583995 ENCODE Processing Pipeline 0b825ed4e4c2f5bd19f429c24b2aadc7 https://www.encodeproject.org/files/ENCFF066HHH/@@download/ENCFF066HHH.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF127ZFX bigWig fold change over control ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF227IZS, ENCFF702WHX, ENCFF795OAZ, ENCFF910IKB 2016159949 ENCODE Processing Pipeline 9afcb68d0c73150a4c0ed22068a2b2e8 https://www.encodeproject.org/files/ENCFF127ZFX/@@download/ENCFF127ZFX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF581OFS bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF702WHX, ENCFF910IKB 7003997 ENCODE Processing Pipeline 99bde86aa26b691a9b9937cde6c0f5cc https://www.encodeproject.org/files/ENCFF581OFS/@@download/ENCFF581OFS.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF983GOR bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF227IZS, ENCFF795OAZ 7078399 ENCODE Processing Pipeline 698ace53e4b4c68d26a6e00d7c312d88 https://www.encodeproject.org/files/ENCFF983GOR/@@download/ENCFF983GOR.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF871MFK bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF227IZS, ENCFF702WHX, ENCFF795OAZ, ENCFF910IKB 7148530 ENCODE Processing Pipeline 8ab8234fcc58fd060b56ae8fb59226fc https://www.encodeproject.org/files/ENCFF871MFK/@@download/ENCFF871MFK.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF153LDL bigBed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF581OFS 12327290 ENCODE Processing Pipeline 8af0b40fe3c6468897b3070ee5e69b6e https://www.encodeproject.org/files/ENCFF153LDL/@@download/ENCFF153LDL.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF482VJO bigBed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF983GOR 12315424 ENCODE Processing Pipeline f20d4510a19785b01a2415b0a5f9acd5 https://www.encodeproject.org/files/ENCFF482VJO/@@download/ENCFF482VJO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF832MJR bigBed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF871MFK 12163691 ENCODE Processing Pipeline b9f353b97e15d97ad9b50a6e97fe6e7c https://www.encodeproject.org/files/ENCFF832MJR/@@download/ENCFF832MJR.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF086TFH bed narrowPeak conservative idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF581OFS, ENCFF871MFK, ENCFF983GOR 156026 ENCODE Processing Pipeline 3e2a35f05b37d2d39e8f35b71d5bfb9f https://www.encodeproject.org/files/ENCFF086TFH/@@download/ENCFF086TFH.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF778OGG bigBed narrowPeak conservative idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF086TFH 359485 ENCODE Processing Pipeline 7e141a7965ddf54b80794174863b3d3e https://www.encodeproject.org/files/ENCFF778OGG/@@download/ENCFF778OGG.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF575WFB bed narrowPeak optimal idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF419RSJ, ENCFF581OFS, ENCFF871MFK, ENCFF983GOR 188401 ENCODE Processing Pipeline e902bd67ee5b2c86f079498a170f908d https://www.encodeproject.org/files/ENCFF575WFB/@@download/ENCFF575WFB.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF861WVI bigBed narrowPeak optimal idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF575WFB 413639 ENCODE Processing Pipeline b0603d5b498c50d46bbf2b8109152e61 https://www.encodeproject.org/files/ENCFF861WVI/@@download/ENCFF861WVI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF565WKY bed narrowPeak conservative idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF001TDO, ENCFF264KUV, ENCFF385LTD, ENCFF409HKO 137716 ENCODE Processing Pipeline 118789a9549ea886b6a5fad66d9cbb97 https://www.encodeproject.org/files/ENCFF565WKY/@@download/ENCFF565WKY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF329YYQ bigBed narrowPeak conservative idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF565WKY 277247 ENCODE Processing Pipeline 2f3437855326e63abaae81999f5ea653 https://www.encodeproject.org/files/ENCFF329YYQ/@@download/ENCFF329YYQ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF561WNI bed narrowPeak optimal idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF001TDO, ENCFF264KUV, ENCFF385LTD, ENCFF409HKO 176911 ENCODE Processing Pipeline 938fcbd1e3573ad84cdb46925b19eb89 https://www.encodeproject.org/files/ENCFF561WNI/@@download/ENCFF561WNI.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF478GXH bigBed narrowPeak optimal idr thresholded peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1, 2 ENCFF561WNI 398551 ENCODE Processing Pipeline f8ba0000530ba26eed77d01549d395ef https://www.encodeproject.org/files/ENCFF478GXH/@@download/ENCFF478GXH.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF189SGX fastq reads ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 1 ENCFF355BXZ 3228016442 Michael Snyder, Stanford 8735b364f20226fa90f5b23215732621 SRA:SRR6213586 https://www.encodeproject.org/files/ENCFF189SGX/@@download/ENCFF189SGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF060CCV fastq reads ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 1 ENCFF352ZKQ 2742967880 Michael Snyder, Stanford 9a791dc7f03c2ecd33b13a9e72c76ccb SRA:SRR6213585 https://www.encodeproject.org/files/ENCFF060CCV/@@download/ENCFF060CCV.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF355BXZ fastq reads ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 1 101 paired-ended 2 ENCFF189SGX 3287527090 Michael Snyder, Stanford 029c095faa9ae72501056953cc0d042d SRA:SRR6213586 https://www.encodeproject.org/files/ENCFF355BXZ/@@download/ENCFF355BXZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF352ZKQ fastq reads ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 1 101 paired-ended 2 ENCFF060CCV 2791538740 Michael Snyder, Stanford 37866bc7d7a49fe37fe7e3f48fca85c6 SRA:SRR6213585 https://www.encodeproject.org/files/ENCFF352ZKQ/@@download/ENCFF352ZKQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF283QQZ bam unfiltered alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF189SGX, ENCFF355BXZ, ENCFF807MUK 7177346975 ENCODE Processing Pipeline 6c7ea32d33dd78814f647b49db579089 https://www.encodeproject.org/files/ENCFF283QQZ/@@download/ENCFF283QQZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF698XKF bam unfiltered alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF060CCV, ENCFF352ZKQ, ENCFF643CGH 6173036889 ENCODE Processing Pipeline 04eaa6eae8904e017a24f9508eca7499 https://www.encodeproject.org/files/ENCFF698XKF/@@download/ENCFF698XKF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF890XLR bam unfiltered alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF060CCV, ENCFF352ZKQ, ENCFF807MUK 6162222892 ENCODE Processing Pipeline 92bc81461816fc459e6073f754b81abf https://www.encodeproject.org/files/ENCFF890XLR/@@download/ENCFF890XLR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF084RAR bam unfiltered alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF189SGX, ENCFF355BXZ, ENCFF643CGH 7189438759 ENCODE Processing Pipeline fa35864c5fcacf9972d815d22bb5a835 https://www.encodeproject.org/files/ENCFF084RAR/@@download/ENCFF084RAR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF727SXP bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF060CCV, ENCFF352ZKQ, ENCFF643CGH 5062018711 ENCODE Processing Pipeline 90d5f12dbaff3ad4896c050d6aae5e3f https://www.encodeproject.org/files/ENCFF727SXP/@@download/ENCFF727SXP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF487QNN bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF060CCV, ENCFF352ZKQ, ENCFF807MUK 5055981662 ENCODE Processing Pipeline 2644de22bcae5bab1889181e60ac2c51 https://www.encodeproject.org/files/ENCFF487QNN/@@download/ENCFF487QNN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF416AHQ bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF189SGX, ENCFF355BXZ, ENCFF807MUK 5888577747 ENCODE Processing Pipeline c4060d04f0aadf1d8db5cb709a662a70 https://www.encodeproject.org/files/ENCFF416AHQ/@@download/ENCFF416AHQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF624RUU bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF189SGX, ENCFF355BXZ, ENCFF643CGH 5895638962 ENCODE Processing Pipeline bc0a082b4613a7794fed4a4bc88e0c7d https://www.encodeproject.org/files/ENCFF624RUU/@@download/ENCFF624RUU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF935EMT bigWig signal p-value ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF416AHQ 1386326665 ENCODE Processing Pipeline e41a9f41a8a048fc3bd702fbe385288a https://www.encodeproject.org/files/ENCFF935EMT/@@download/ENCFF935EMT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF079CMG bigWig signal p-value ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF487QNN 1269234526 ENCODE Processing Pipeline 6c6b22be9b00f7c517860ed2a045696a https://www.encodeproject.org/files/ENCFF079CMG/@@download/ENCFF079CMG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF928PYV bigWig signal p-value ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF416AHQ, ENCFF487QNN 1999368651 ENCODE Processing Pipeline 2ae5812d73dc58fdae93e228ca273586 https://www.encodeproject.org/files/ENCFF928PYV/@@download/ENCFF928PYV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF375TUX bigWig fold change over control ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF416AHQ 1506352382 ENCODE Processing Pipeline 60c7af1147f4538c01afcc384b184616 https://www.encodeproject.org/files/ENCFF375TUX/@@download/ENCFF375TUX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF474LLS bigWig fold change over control ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF487QNN 1380345907 ENCODE Processing Pipeline ff43ff50c319383e03221e737bd85a02 https://www.encodeproject.org/files/ENCFF474LLS/@@download/ENCFF474LLS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF292GSO bigWig fold change over control ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF416AHQ, ENCFF487QNN 2024304252 ENCODE Processing Pipeline a89b2711600e97f68125b38247f04a16 https://www.encodeproject.org/files/ENCFF292GSO/@@download/ENCFF292GSO.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF661WDY bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF416AHQ 6331254 ENCODE Processing Pipeline 7dcaf709a3c0f60fc97b7f22ea5ec88b https://www.encodeproject.org/files/ENCFF661WDY/@@download/ENCFF661WDY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF348SEZ bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF487QNN 6246497 ENCODE Processing Pipeline dc69abc4cb1c24d8da0514f69cfbf8ee https://www.encodeproject.org/files/ENCFF348SEZ/@@download/ENCFF348SEZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF865ZED bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF416AHQ, ENCFF487QNN 7161780 ENCODE Processing Pipeline 78f48d8c3868446de7f34bfd9c3422d4 https://www.encodeproject.org/files/ENCFF865ZED/@@download/ENCFF865ZED.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF198XQX bigBed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF661WDY 11309026 ENCODE Processing Pipeline ad79381116677320f7d035bea7af3aab https://www.encodeproject.org/files/ENCFF198XQX/@@download/ENCFF198XQX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF872BHW bigBed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF348SEZ 11401380 ENCODE Processing Pipeline 6653113eb1e220f47137f65f7dd9cb0e https://www.encodeproject.org/files/ENCFF872BHW/@@download/ENCFF872BHW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF544WQV bed narrowPeak conservative idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF348SEZ, ENCFF661WDY, ENCFF865ZED 6241 ENCODE Processing Pipeline 44bb0de85cb3109e46af8764ee56e33b https://www.encodeproject.org/files/ENCFF544WQV/@@download/ENCFF544WQV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF121KTI bigBed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF865ZED 11426723 ENCODE Processing Pipeline ac142518a7a158b11748011aefc7afe2 https://www.encodeproject.org/files/ENCFF121KTI/@@download/ENCFF121KTI.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF222BOO bigBed narrowPeak conservative idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF544WQV 68673 ENCODE Processing Pipeline 034b4c8fff2984b059f120969d31d433 https://www.encodeproject.org/files/ENCFF222BOO/@@download/ENCFF222BOO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF519CSQ bed narrowPeak optimal idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF348SEZ, ENCFF661WDY, ENCFF865ZED 12075 ENCODE Processing Pipeline f4f9f84a3b03e3cd8df109413a03acad https://www.encodeproject.org/files/ENCFF519CSQ/@@download/ENCFF519CSQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF753FAY bigBed narrowPeak optimal idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF519CSQ 70463 ENCODE Processing Pipeline fa388e17078503cf4bdd1709074edc85 https://www.encodeproject.org/files/ENCFF753FAY/@@download/ENCFF753FAY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF102HDB bigWig signal p-value ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF624RUU 1545304653 ENCODE Processing Pipeline 54d9573f8bbc7310fc9e0b7e9e87364d https://www.encodeproject.org/files/ENCFF102HDB/@@download/ENCFF102HDB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF248UKI bigWig signal p-value ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF624RUU, ENCFF727SXP 2011365527 ENCODE Processing Pipeline 8961845839bf9021ed44b8acdf0f0d0a https://www.encodeproject.org/files/ENCFF248UKI/@@download/ENCFF248UKI.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF206DOS bigWig fold change over control ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF624RUU 1507167634 ENCODE Processing Pipeline ecb090177728a0edf3df54d4e362d236 https://www.encodeproject.org/files/ENCFF206DOS/@@download/ENCFF206DOS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF651OPE bigWig signal p-value ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF727SXP 1382650589 ENCODE Processing Pipeline e1db165ecc5c9d8dae604a3278e249ae https://www.encodeproject.org/files/ENCFF651OPE/@@download/ENCFF651OPE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF059RUJ bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF624RUU 6168923 ENCODE Processing Pipeline 0b1fa75e936de1774e66465ddae047c5 https://www.encodeproject.org/files/ENCFF059RUJ/@@download/ENCFF059RUJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF682KWL bigWig fold change over control ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF727SXP 1393943258 ENCODE Processing Pipeline df41bea783707c4e914ea7f06c990c1c https://www.encodeproject.org/files/ENCFF682KWL/@@download/ENCFF682KWL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF874UPM bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF727SXP 6063940 ENCODE Processing Pipeline 394b795f6d43ea19122c614dfe652220 https://www.encodeproject.org/files/ENCFF874UPM/@@download/ENCFF874UPM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF466UFN bigBed narrowPeak conservative idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF847SDE 84336 ENCODE Processing Pipeline 10942090d742490a7ebea47f168782ae https://www.encodeproject.org/files/ENCFF466UFN/@@download/ENCFF466UFN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF477PDI bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF624RUU, ENCFF727SXP 7123002 ENCODE Processing Pipeline d840363789669a1c7134349b9b6e0811 https://www.encodeproject.org/files/ENCFF477PDI/@@download/ENCFF477PDI.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF262FFI bigBed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF059RUJ 11325078 ENCODE Processing Pipeline d1996d0637550a125b8e7dda51c0030d https://www.encodeproject.org/files/ENCFF262FFI/@@download/ENCFF262FFI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF331VOZ bigBed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF477PDI 11441633 ENCODE Processing Pipeline 02931ede79db1703f01cf8bc59601b14 https://www.encodeproject.org/files/ENCFF331VOZ/@@download/ENCFF331VOZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF265LNU bed narrowPeak optimal idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF059RUJ, ENCFF419RSJ, ENCFF477PDI, ENCFF874UPM 15318 ENCODE Processing Pipeline 5a4c3a8d05fee7df1e942ba94ae217fc https://www.encodeproject.org/files/ENCFF265LNU/@@download/ENCFF265LNU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF598ORF bigWig fold change over control ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF624RUU, ENCFF727SXP 2033953140 ENCODE Processing Pipeline dbc2637d3ad67a3f88a088a63ebcdfe7 https://www.encodeproject.org/files/ENCFF598ORF/@@download/ENCFF598ORF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF395QWO bigBed narrowPeak optimal idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF265LNU 90278 ENCODE Processing Pipeline f07e8d37fd44af165a78b52ebeedfed9 https://www.encodeproject.org/files/ENCFF395QWO/@@download/ENCFF395QWO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF761SPH bigBed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF874UPM 11401447 ENCODE Processing Pipeline 06baf4853edb0cad98561f160b0eb051 https://www.encodeproject.org/files/ENCFF761SPH/@@download/ENCFF761SPH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF847SDE bed narrowPeak conservative idr thresholded peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1, 2 ENCFF059RUJ, ENCFF419RSJ, ENCFF477PDI, ENCFF874UPM 8181 ENCODE Processing Pipeline fd4dafe1f6042dcb2c60cd52444db86f https://www.encodeproject.org/files/ENCFF847SDE/@@download/ENCFF847SDE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF425VPI bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF807MUK 4573220964 ENCODE Processing Pipeline f6c3ab57ccf764e41f7f3912940ec989 https://www.encodeproject.org/files/ENCFF425VPI/@@download/ENCFF425VPI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF218VQM bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF807MUK 4292875551 ENCODE Processing Pipeline 89d3b755b8a69fb3ffd338976c1a502d https://www.encodeproject.org/files/ENCFF218VQM/@@download/ENCFF218VQM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF654ZNL bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1592456332 ENCODE Processing Pipeline f1b7b794f207e4cf5d2905825d609324 https://www.encodeproject.org/files/ENCFF654ZNL/@@download/ENCFF654ZNL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EJZ fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EKA 2245813254 Michael Snyder, Stanford 5f79e3eb85359fcdc814870275211eb1 SRA:SRR5111859 https://www.encodeproject.org/files/ENCFF002EJZ/@@download/ENCFF002EJZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFU/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EKA fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EJZ 2238446186 Michael Snyder, Stanford 1c169d29917a14cc7018cc36629623fd SRA:SRR5111859 https://www.encodeproject.org/files/ENCFF002EKA/@@download/ENCFF002EKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFS/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EKB fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EKC 2099836661 Michael Snyder, Stanford 5d2e6f0b8f1713391fb62f644625058d SRA:SRR5111860 https://www.encodeproject.org/files/ENCFF002EKB/@@download/ENCFF002EKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFT/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EKC fastq reads ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EKB 2098946509 Michael Snyder, Stanford ce5468ac8c61efc4d2ab4cf5ec6efb2b SRA:SRR5111860 https://www.encodeproject.org/files/ENCFF002EKC/@@download/ENCFF002EKC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFQ/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF959JZX bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5603245 ENCODE Processing Pipeline 19e02c2d6f1085dfc408eb2710934272 https://www.encodeproject.org/files/ENCFF959JZX/@@download/ENCFF959JZX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF831JVY bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 6728841 ENCODE Processing Pipeline eee11253ed75ddc4964bd591c3a4e98a https://www.encodeproject.org/files/ENCFF831JVY/@@download/ENCFF831JVY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF422WMJ bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1838524283 ENCODE Processing Pipeline 69852cdb09b498ec87f4cbd998424d1d https://www.encodeproject.org/files/ENCFF422WMJ/@@download/ENCFF422WMJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF862QRJ bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 5524368 ENCODE Processing Pipeline 7782263881bcd6ed3afcd8274cfde3ef https://www.encodeproject.org/files/ENCFF862QRJ/@@download/ENCFF862QRJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF616LHO bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF862QRJ 11232916 ENCODE Processing Pipeline 0b03421aad909c80cc8bfc0b7b5d7f4e https://www.encodeproject.org/files/ENCFF616LHO/@@download/ENCFF616LHO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF917DPO bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF959JZX 11200613 ENCODE Processing Pipeline 71151f8471b9d71b49caaf6df53be04a https://www.encodeproject.org/files/ENCFF917DPO/@@download/ENCFF917DPO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF160UHF bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF831JVY 11140788 ENCODE Processing Pipeline d631ab949c01e9f1715069f3cd4961ac https://www.encodeproject.org/files/ENCFF160UHF/@@download/ENCFF160UHF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF356UKE bed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF831JVY, ENCFF862QRJ, ENCFF959JZX 51429 ENCODE Processing Pipeline 59d500e6b074299d2b6f2028733b9279 https://www.encodeproject.org/files/ENCFF356UKE/@@download/ENCFF356UKE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF516AJC bed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF831JVY, ENCFF862QRJ, ENCFF959JZX 74606 ENCODE Processing Pipeline 316374d55e9babf8e309648be088e6f9 https://www.encodeproject.org/files/ENCFF516AJC/@@download/ENCFF516AJC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF403EMJ bigBed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF356UKE 152706 ENCODE Processing Pipeline 1cddd9277aefa0ee60e2f6227e3bd5af https://www.encodeproject.org/files/ENCFF403EMJ/@@download/ENCFF403EMJ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF381TID bigBed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF516AJC 194711 ENCODE Processing Pipeline 9f58931faacf3653629d276266cc10a9 https://www.encodeproject.org/files/ENCFF381TID/@@download/ENCFF381TID.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF481EUA bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF807MUK 2903232470 ENCODE Processing Pipeline bcbde95328c05d71ce914c8ca4dbbbf0 https://www.encodeproject.org/files/ENCFF481EUA/@@download/ENCFF481EUA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF102NUJ bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF807MUK 2685016742 ENCODE Processing Pipeline 2c8a8bff35f4f446ac686ed1cd6edd83 https://www.encodeproject.org/files/ENCFF102NUJ/@@download/ENCFF102NUJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF927YIG bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 1050979264 ENCODE Processing Pipeline 5d86956107fa856538fd936dc2d9c015 https://www.encodeproject.org/files/ENCFF927YIG/@@download/ENCFF927YIG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF602HXV bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 922420283 ENCODE Processing Pipeline df43c2725a5dc0e129deb07ba38fe8b1 https://www.encodeproject.org/files/ENCFF602HXV/@@download/ENCFF602HXV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF336ZDO bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1604499321 ENCODE Processing Pipeline 6166d3f4ca05bb58cc5de869067332e5 https://www.encodeproject.org/files/ENCFF336ZDO/@@download/ENCFF336ZDO.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF134JDG bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 943518012 ENCODE Processing Pipeline a76d85fc4aa967f41972843272aad431 https://www.encodeproject.org/files/ENCFF134JDG/@@download/ENCFF134JDG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF223SSQ bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 5745543 ENCODE Processing Pipeline 5f02c18d1026eea8f39907bf8d697ec9 https://www.encodeproject.org/files/ENCFF223SSQ/@@download/ENCFF223SSQ.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF619OWB bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5786788 ENCODE Processing Pipeline aa8a31c877313a6f0bdb97e87a00a5f8 https://www.encodeproject.org/files/ENCFF619OWB/@@download/ENCFF619OWB.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF239BVP bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 933879866 ENCODE Processing Pipeline 2a05a4f65e68d671952de2402c0d6753 https://www.encodeproject.org/files/ENCFF239BVP/@@download/ENCFF239BVP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF780DCP bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF619OWB 11244729 ENCODE Processing Pipeline 79f4433647f9907b061e4f54323de095 https://www.encodeproject.org/files/ENCFF780DCP/@@download/ENCFF780DCP.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF081JNI bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF229JRX 11143036 ENCODE Processing Pipeline 57cb4b5401a04833572ecb9a960d0be6 https://www.encodeproject.org/files/ENCFF081JNI/@@download/ENCFF081JNI.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF377GCQ bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 1852683009 ENCODE Processing Pipeline 1c7fbdf06c39ed00adeca546be80f63f https://www.encodeproject.org/files/ENCFF377GCQ/@@download/ENCFF377GCQ.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF781OEM bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF223SSQ 11264859 ENCODE Processing Pipeline 331e394e42baa6fbb21cbdf05d03acf8 https://www.encodeproject.org/files/ENCFF781OEM/@@download/ENCFF781OEM.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF229JRX bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF102NUJ, ENCFF287SKW, ENCFF481EUA, ENCFF941TZZ 6854647 ENCODE Processing Pipeline 3d692715716b4b656c51b22e0c5c4a88 https://www.encodeproject.org/files/ENCFF229JRX/@@download/ENCFF229JRX.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF865MRA bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF643CGH 4294624242 ENCODE Processing Pipeline ac1493c552e53e3ac392db61a05ab095 https://www.encodeproject.org/files/ENCFF865MRA/@@download/ENCFF865MRA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF642CBH bam unfiltered alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF643CGH 4575556310 ENCODE Processing Pipeline 9a0c57e8d30a60cfb0be9ca3fda85b5a https://www.encodeproject.org/files/ENCFF642CBH/@@download/ENCFF642CBH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF235FDS bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF643CGH 2689562996 ENCODE Processing Pipeline 6209e97f13ec8e6e1ed96567890030b4 https://www.encodeproject.org/files/ENCFF235FDS/@@download/ENCFF235FDS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF714EVJ bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF643CGH 2906408455 ENCODE Processing Pipeline 50e031970fd49dfbb9c302f3b7414343 https://www.encodeproject.org/files/ENCFF714EVJ/@@download/ENCFF714EVJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF427FJT bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF235FDS, ENCFF879YMO 935399658 ENCODE Processing Pipeline 04b2ecf46f03718c9e793ce213e305d2 https://www.encodeproject.org/files/ENCFF427FJT/@@download/ENCFF427FJT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF196WZJ bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF574BGV, ENCFF714EVJ 971200451 ENCODE Processing Pipeline 952042a7e4d79132e48e3e18a99111f4 https://www.encodeproject.org/files/ENCFF196WZJ/@@download/ENCFF196WZJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF058VWP bigWig signal p-value ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF235FDS, ENCFF574BGV, ENCFF714EVJ, ENCFF879YMO 1730983861 ENCODE Processing Pipeline 97f79e6c29e62df33cbe60312d73290c https://www.encodeproject.org/files/ENCFF058VWP/@@download/ENCFF058VWP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF746UHI bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF235FDS, ENCFF879YMO 945188847 ENCODE Processing Pipeline b3b63b44088c5bcdac8511aad66057aa https://www.encodeproject.org/files/ENCFF746UHI/@@download/ENCFF746UHI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF662QXE bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF574BGV, ENCFF714EVJ 897706514 ENCODE Processing Pipeline 64224813cbde8912cdb42c2a8efeac53 https://www.encodeproject.org/files/ENCFF662QXE/@@download/ENCFF662QXE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF328AZH bigWig fold change over control ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF235FDS, ENCFF574BGV, ENCFF714EVJ, ENCFF879YMO 1848762651 ENCODE Processing Pipeline 0f9069a5a3227740784f3b8fcff7ef8b https://www.encodeproject.org/files/ENCFF328AZH/@@download/ENCFF328AZH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF488UQC bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF235FDS, ENCFF879YMO 5523749 ENCODE Processing Pipeline 35253498e11627c527670fcc05329fae https://www.encodeproject.org/files/ENCFF488UQC/@@download/ENCFF488UQC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF717JID bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF235FDS, ENCFF574BGV, ENCFF714EVJ, ENCFF879YMO 6733059 ENCODE Processing Pipeline 452899571e36c399ef80baff1abc18e9 https://www.encodeproject.org/files/ENCFF717JID/@@download/ENCFF717JID.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF275VNI bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF574BGV, ENCFF714EVJ 5590651 ENCODE Processing Pipeline 08dd7cb7ab067202325e3a3c9266691e https://www.encodeproject.org/files/ENCFF275VNI/@@download/ENCFF275VNI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF207IAM bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF488UQC 11254112 ENCODE Processing Pipeline 411c911fe6ce83e28a24c4598e7af99d https://www.encodeproject.org/files/ENCFF207IAM/@@download/ENCFF207IAM.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF570EKG bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF275VNI 11229234 ENCODE Processing Pipeline f744e566fdddb30141259d95512375cc https://www.encodeproject.org/files/ENCFF570EKG/@@download/ENCFF570EKG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF897TSJ bigBed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF717JID 11165783 ENCODE Processing Pipeline b3f9869af6e4bf486894740e6a616df1 https://www.encodeproject.org/files/ENCFF897TSJ/@@download/ENCFF897TSJ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF979BQI bed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF275VNI, ENCFF419RSJ, ENCFF488UQC, ENCFF717JID 54842 ENCODE Processing Pipeline 06a86a732bcf3992073f8e38d0446792 https://www.encodeproject.org/files/ENCFF979BQI/@@download/ENCFF979BQI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF110IKS bigBed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF979BQI 157966 ENCODE Processing Pipeline 8a08b4ce4721c4b52da97734b4e0b3d5 https://www.encodeproject.org/files/ENCFF110IKS/@@download/ENCFF110IKS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF116AMK bed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF275VNI, ENCFF419RSJ, ENCFF488UQC, ENCFF717JID 70930 ENCODE Processing Pipeline d2f7dc485fe7bf6d71fb2e92411b47d5 https://www.encodeproject.org/files/ENCFF116AMK/@@download/ENCFF116AMK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF170DHA bigBed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF116AMK 185570 ENCODE Processing Pipeline 9bcf9685c50d89a9306023aafd784cb5 https://www.encodeproject.org/files/ENCFF170DHA/@@download/ENCFF170DHA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF578GCS bed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF223SSQ, ENCFF229JRX, ENCFF619OWB 42050 ENCODE Processing Pipeline 6dd2e644e71b971775d48a2d75715525 https://www.encodeproject.org/files/ENCFF578GCS/@@download/ENCFF578GCS.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF294XAI bigBed narrowPeak conservative idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF578GCS 140042 ENCODE Processing Pipeline e343fb5936a304eed0ad0d9cf587dd6d https://www.encodeproject.org/files/ENCFF294XAI/@@download/ENCFF294XAI.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF811XME bigBed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF304WER 173579 ENCODE Processing Pipeline cb43537282a8dc0a32e00fd1a3cb3dd2 https://www.encodeproject.org/files/ENCFF811XME/@@download/ENCFF811XME.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF304WER bed narrowPeak optimal idr thresholded peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF223SSQ, ENCFF229JRX, ENCFF619OWB 60721 ENCODE Processing Pipeline 03d66d5223fdbf6557b9ae28d5174c0f https://www.encodeproject.org/files/ENCFF304WER/@@download/ENCFF304WER.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF885MZT fastq reads ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 1 36 single-ended 1975074567 Bradley Bernstein, Broad 936e6d5e70ce5bc017921cc1a641fc26 https://www.encodeproject.org/files/ENCFF885MZT/@@download/ENCFF885MZT.fastq.gz Illumina HiSeq 2000 /files/ENCFF407DUW/ released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF558XWA bam redacted unfiltered alignments ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 36 ENCFF643CGH, ENCFF885MZT 834982734 ENCODE Processing Pipeline 40c97d8a0b47790662d11065c453f945 https://www.encodeproject.org/files/ENCFF558XWA/@@download/ENCFF558XWA.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF147OUB bam redacted alignments ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 36 ENCFF643CGH, ENCFF885MZT 596820774 ENCODE Processing Pipeline d14a6332800d470b6a5d907b504ace8e https://www.encodeproject.org/files/ENCFF147OUB/@@download/ENCFF147OUB.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF351IPQ bam redacted unfiltered alignments ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 36 ENCFF807MUK, ENCFF885MZT 828186425 ENCODE Processing Pipeline 7068af919b933588e81818ff385160d5 https://www.encodeproject.org/files/ENCFF351IPQ/@@download/ENCFF351IPQ.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF453BFT bam redacted alignments ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 36 ENCFF807MUK, ENCFF885MZT 596988417 ENCODE Processing Pipeline c85ba1c9bfcd0282b0efafdff542bc7b https://www.encodeproject.org/files/ENCFF453BFT/@@download/ENCFF453BFT.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF154MCX bigWig signal p-value ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF147OUB, ENCFF242IEI 839692250 ENCODE Processing Pipeline fc1a442f610e9e6c248ec400ca949455 https://www.encodeproject.org/files/ENCFF154MCX/@@download/ENCFF154MCX.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF658WYM bed narrowPeak peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF147OUB, ENCFF242IEI 5066066 ENCODE Processing Pipeline ef3a77d622b10a39bd2ea5856d59f765 https://www.encodeproject.org/files/ENCFF658WYM/@@download/ENCFF658WYM.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF692OHJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF177UJN 617876 ENCODE Processing Pipeline 8d5e617c86f587717461dd2e73c185ad https://www.encodeproject.org/files/ENCFF692OHJ/@@download/ENCFF692OHJ.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF611BDX bigWig signal p-value ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF349CTQ, ENCFF453BFT 840159011 ENCODE Processing Pipeline 139b44cdc0083d6db8bde283678a1c07 https://www.encodeproject.org/files/ENCFF611BDX/@@download/ENCFF611BDX.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF355LBT bed narrowPeak peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF349CTQ, ENCFF453BFT 5107706 ENCODE Processing Pipeline 5965f62be4f7afc2c177bccaa6812360 https://www.encodeproject.org/files/ENCFF355LBT/@@download/ENCFF355LBT.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF810RPL bigBed narrowPeak peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF355LBT 11462539 ENCODE Processing Pipeline e953b95baf31d054d0b982b5964ac4fb https://www.encodeproject.org/files/ENCFF810RPL/@@download/ENCFF810RPL.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF837MFV bigWig fold change over control ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF147OUB, ENCFF242IEI 830613710 ENCODE Processing Pipeline 938b1f8b8362355a932a2c0868c229bf https://www.encodeproject.org/files/ENCFF837MFV/@@download/ENCFF837MFV.bigWig GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF147HYW bigBed narrowPeak peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF658WYM 11415695 ENCODE Processing Pipeline e8a1ebcbcba345c2f8efc9c620e92ea1 https://www.encodeproject.org/files/ENCFF147HYW/@@download/ENCFF147HYW.bigBed GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF177UJN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF419RSJ, ENCFF658WYM 329865 ENCODE Processing Pipeline 566dbab6c4b5a15e4861aa255432e482 https://www.encodeproject.org/files/ENCFF177UJN/@@download/ENCFF177UJN.bed.gz GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF980GQH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF001TDO, ENCFF355LBT 342766 ENCODE Processing Pipeline ab32992c1ecadf0c50bb442c84413be4 https://www.encodeproject.org/files/ENCFF980GQH/@@download/ENCFF980GQH.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF591MSO bigWig fold change over control ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF349CTQ, ENCFF453BFT 832348672 ENCODE Processing Pipeline 75cfe49f4e1b22a3f37c30c020ac2d7e https://www.encodeproject.org/files/ENCFF591MSO/@@download/ENCFF591MSO.bigWig hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF685EKB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF980GQH 638005 ENCODE Processing Pipeline 088d3b00cd80ffd485fcb80103b8cd6d https://www.encodeproject.org/files/ENCFF685EKB/@@download/ENCFF685EKB.bigBed hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF482RVV bam unfiltered alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPO, ENCFF002EGK, ENCFF807MUK 5818202361 ENCODE Processing Pipeline fa82a9154746fc069f10f5d8342884d0 https://www.encodeproject.org/files/ENCFF482RVV/@@download/ENCFF482RVV.bam hg19 released ENCFF371LIR bam unfiltered alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPS, ENCFF002EGS, ENCFF807MUK 7891077162 ENCODE Processing Pipeline 0ce37686d3a6b59f4e06707515f42236 https://www.encodeproject.org/files/ENCFF371LIR/@@download/ENCFF371LIR.bam hg19 released ENCFF127VME bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 909114260 ENCODE Processing Pipeline 046ef2ac630ae6ab598f62b712f68482 https://www.encodeproject.org/files/ENCFF127VME/@@download/ENCFF127VME.bigWig hg19 released ENCFF831NGU bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 1083420549 ENCODE Processing Pipeline 4552d8f9a6aae88a41945f7b1e85312c https://www.encodeproject.org/files/ENCFF831NGU/@@download/ENCFF831NGU.bigWig hg19 released ENCFF002DPO fastq reads ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EGK 2501472433 Michael Snyder, Stanford fc07f49033ccfd22df8e64a1d7fb7ae2 SRA:SRR5111770 https://www.encodeproject.org/files/ENCFF002DPO/@@download/ENCFF002DPO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF002DPS fastq reads ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EGS 3644017488 Michael Snyder, Stanford 22dccb1026bbbf921ac071b8a6d8285d SRA:SRR5111771 https://www.encodeproject.org/files/ENCFF002DPS/@@download/ENCFF002DPS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF002EGK fastq reads ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002DPO 2539012779 Michael Snyder, Stanford e235171e7f0ea16b728a1552a5902162 SRA:SRR5111770 https://www.encodeproject.org/files/ENCFF002EGK/@@download/ENCFF002EGK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF002EGS fastq reads ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002DPS 3662817998 Michael Snyder, Stanford 67093a8daf990a5bacd9837444e2ca63 SRA:SRR5111771 https://www.encodeproject.org/files/ENCFF002EGS/@@download/ENCFF002EGS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF331EWI bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 6061709 ENCODE Processing Pipeline 6b5c1a30276be20896438a43bbae02db https://www.encodeproject.org/files/ENCFF331EWI/@@download/ENCFF331EWI.bed.gz hg19 released ENCFF376IUM bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 6928265 ENCODE Processing Pipeline e5d4a150f21727fc54d1e0fc0c0ac2e9 https://www.encodeproject.org/files/ENCFF376IUM/@@download/ENCFF376IUM.bed.gz hg19 released ENCFF788MAN bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF376IUM 13311768 ENCODE Processing Pipeline 41e86b4973b32bcf7042ed608bf50a16 https://www.encodeproject.org/files/ENCFF788MAN/@@download/ENCFF788MAN.bigBed hg19 released ENCFF601FJF bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF059RII, ENCFF114GGP, ENCFF583FAG 7195193 ENCODE Processing Pipeline fcfa85d50339d38998e86b9e6dcb1d48 https://www.encodeproject.org/files/ENCFF601FJF/@@download/ENCFF601FJF.bed.gz hg19 released ENCFF490RSM bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF331EWI 11198293 ENCODE Processing Pipeline 2a95030f8d59e78a328e651652f51ca1 https://www.encodeproject.org/files/ENCFF490RSM/@@download/ENCFF490RSM.bigBed hg19 released ENCFF710BLW bigBed narrowPeak conservative idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF726DUK 345060 ENCODE Processing Pipeline cb1e0019150ccf89a1d81e88df3925ee https://www.encodeproject.org/files/ENCFF710BLW/@@download/ENCFF710BLW.bigBed hg19 released ENCFF451WXQ bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF601FJF 13227396 ENCODE Processing Pipeline a17d7ed0b0356ee15a2770132a2f903c https://www.encodeproject.org/files/ENCFF451WXQ/@@download/ENCFF451WXQ.bigBed hg19 released ENCFF726DUK bed narrowPeak conservative idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF331EWI, ENCFF376IUM, ENCFF601FJF 166567 ENCODE Processing Pipeline 8724886e94cf0e2302e5abe7c462f083 https://www.encodeproject.org/files/ENCFF726DUK/@@download/ENCFF726DUK.bed.gz hg19 released ENCFF451RKK bed narrowPeak optimal idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF331EWI, ENCFF376IUM, ENCFF601FJF 214449 ENCODE Processing Pipeline 2f9f6a2c05c6da3570536da4a30e062d https://www.encodeproject.org/files/ENCFF451RKK/@@download/ENCFF451RKK.bed.gz hg19 released ENCFF808WUA bigBed narrowPeak optimal idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF451RKK 415679 ENCODE Processing Pipeline a5b7358f435ed2f408b0b243244b8235 https://www.encodeproject.org/files/ENCFF808WUA/@@download/ENCFF808WUA.bigBed hg19 released ENCFF114GGP bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPS, ENCFF002EGS, ENCFF807MUK 6942020510 ENCODE Processing Pipeline 07a34adbcaeb2873fdd5ec44f615f278 https://www.encodeproject.org/files/ENCFF114GGP/@@download/ENCFF114GGP.bam hg19 released ENCFF059RII bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPO, ENCFF002EGK, ENCFF807MUK 4832650658 ENCODE Processing Pipeline 633358a5f8d67fb8b096041efcc78e3b https://www.encodeproject.org/files/ENCFF059RII/@@download/ENCFF059RII.bam hg19 released ENCFF567TVX bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 937145266 ENCODE Processing Pipeline 6384568711856d6f4da181d39555bef7 https://www.encodeproject.org/files/ENCFF567TVX/@@download/ENCFF567TVX.bigWig hg19 archived ENCFF224QHR bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 1425601483 ENCODE Processing Pipeline aac7328d187fd58a65a376906f64b645 https://www.encodeproject.org/files/ENCFF224QHR/@@download/ENCFF224QHR.bigWig hg19 released ENCFF251SJR bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF059RII, ENCFF114GGP, ENCFF583FAG 2047941354 ENCODE Processing Pipeline 2b83d3e7f3725987b544d617e66bb7ad https://www.encodeproject.org/files/ENCFF251SJR/@@download/ENCFF251SJR.bigWig hg19 released ENCFF604AVK bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 1095367934 ENCODE Processing Pipeline 19887949d246dcb5c337f9eacd4ebd2a https://www.encodeproject.org/files/ENCFF604AVK/@@download/ENCFF604AVK.bigWig hg19 archived ENCFF805FFO bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 1822703801 ENCODE Processing Pipeline 3f72717279e0b27c9140eee7a5407fcd https://www.encodeproject.org/files/ENCFF805FFO/@@download/ENCFF805FFO.bigWig hg19 released ENCFF235WHO bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF059RII, ENCFF114GGP, ENCFF583FAG 2226706738 ENCODE Processing Pipeline b85efa44402b65b4fbb53196b327594e https://www.encodeproject.org/files/ENCFF235WHO/@@download/ENCFF235WHO.bigWig hg19 released ENCFF380LCN bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 6221920 ENCODE Processing Pipeline 2e346273fc2abe47ed39399cd1e525b1 https://www.encodeproject.org/files/ENCFF380LCN/@@download/ENCFF380LCN.bed.gz hg19 archived ENCFF603JPR bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF049MPQ, ENCFF059RII, ENCFF114GGP, ENCFF583FAG 7219748 ENCODE Processing Pipeline 541e9f7d138999a0a8e99bd93a993c3c https://www.encodeproject.org/files/ENCFF603JPR/@@download/ENCFF603JPR.bed.gz hg19 archived ENCFF136ABL bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF603JPR 13228991 ENCODE Processing Pipeline 6cc3e84e3949abb2f1b89e774947e9ce https://www.encodeproject.org/files/ENCFF136ABL/@@download/ENCFF136ABL.bigBed hg19 archived ENCFF361MVW bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 7008093 ENCODE Processing Pipeline 99d5dedef33c69294237b20506127214 https://www.encodeproject.org/files/ENCFF361MVW/@@download/ENCFF361MVW.bed.gz hg19 archived ENCFF019DJV bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF380LCN 11217565 ENCODE Processing Pipeline 29f84b87cfa05c79977d9ef909547726 https://www.encodeproject.org/files/ENCFF019DJV/@@download/ENCFF019DJV.bigBed hg19 archived ENCFF260RHI bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF361MVW 13313519 ENCODE Processing Pipeline 958b3bc68a7ce5a67586167193893ce8 https://www.encodeproject.org/files/ENCFF260RHI/@@download/ENCFF260RHI.bigBed hg19 archived ENCFF643FMV bam unfiltered alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPO, ENCFF002EGK, ENCFF643CGH 5835971781 ENCODE Processing Pipeline 33232ca6d89e8003e5e9f03e6f467418 https://www.encodeproject.org/files/ENCFF643FMV/@@download/ENCFF643FMV.bam GRCh38 released ENCFF790CWC bam unfiltered alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPS, ENCFF002EGS, ENCFF643CGH 7905599673 ENCODE Processing Pipeline e442e01aa418d75a5331336cbe8ebb51 https://www.encodeproject.org/files/ENCFF790CWC/@@download/ENCFF790CWC.bam GRCh38 released ENCFF662RWY bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPO, ENCFF002EGK, ENCFF643CGH 4836207801 ENCODE Processing Pipeline 52e6fe53136109bd40efa398da391d68 https://www.encodeproject.org/files/ENCFF662RWY/@@download/ENCFF662RWY.bam GRCh38 released ENCFF069WYM bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPS, ENCFF002EGS, ENCFF643CGH 6946154476 ENCODE Processing Pipeline fc7be24e5be0168ad7993bb9ce1b3785 https://www.encodeproject.org/files/ENCFF069WYM/@@download/ENCFF069WYM.bam GRCh38 released ENCFF114ZPW bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF662RWY 945453516 ENCODE Processing Pipeline db9759899c2b220ec1f098cd67b7ae4c https://www.encodeproject.org/files/ENCFF114ZPW/@@download/ENCFF114ZPW.bigWig GRCh38 released ENCFF273HNF bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF069WYM, ENCFF291AFY, ENCFF426RDP 1459594270 ENCODE Processing Pipeline 69e53700a80b2b2a4231728b72d0a4e6 https://www.encodeproject.org/files/ENCFF273HNF/@@download/ENCFF273HNF.bigWig GRCh38 released ENCFF995QUQ bigWig signal p-value ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF069WYM, ENCFF291AFY, ENCFF426RDP, ENCFF662RWY 2025294758 ENCODE Processing Pipeline b6f83edae8777eabf8ba0dc8602e6757 https://www.encodeproject.org/files/ENCFF995QUQ/@@download/ENCFF995QUQ.bigWig GRCh38 released ENCFF915YVB bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF662RWY 1097504496 ENCODE Processing Pipeline c3208a76489425ef06831bee3fb7cb54 https://www.encodeproject.org/files/ENCFF915YVB/@@download/ENCFF915YVB.bigWig GRCh38 released ENCFF788FHX bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF069WYM, ENCFF291AFY, ENCFF426RDP 1825944826 ENCODE Processing Pipeline e3f6c5f46bc9b1866b09dea145e6d2f2 https://www.encodeproject.org/files/ENCFF788FHX/@@download/ENCFF788FHX.bigWig GRCh38 released ENCFF273OEJ bigWig fold change over control ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF069WYM, ENCFF291AFY, ENCFF426RDP, ENCFF662RWY 2224601955 ENCODE Processing Pipeline 49e8219502b29ee3597c0d31f10e3373 https://www.encodeproject.org/files/ENCFF273OEJ/@@download/ENCFF273OEJ.bigWig GRCh38 released ENCFF130BQV bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF426RDP, ENCFF662RWY 6076655 ENCODE Processing Pipeline 094b425f77fc0db167ed5930e3fcfa87 https://www.encodeproject.org/files/ENCFF130BQV/@@download/ENCFF130BQV.bed.gz GRCh38 released ENCFF634LBE bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF069WYM, ENCFF291AFY, ENCFF426RDP 6938579 ENCODE Processing Pipeline dc47039e2e4f81022d8be61eaed7f6ab https://www.encodeproject.org/files/ENCFF634LBE/@@download/ENCFF634LBE.bed.gz GRCh38 released ENCFF599TOC bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF069WYM, ENCFF291AFY, ENCFF426RDP, ENCFF662RWY 7209426 ENCODE Processing Pipeline 541be09a49c82123be01aa5fce5e5ac1 https://www.encodeproject.org/files/ENCFF599TOC/@@download/ENCFF599TOC.bed.gz GRCh38 released ENCFF893KGM bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF130BQV 11218839 ENCODE Processing Pipeline fc2f5567acb6d86f6e265d6f6f284b52 https://www.encodeproject.org/files/ENCFF893KGM/@@download/ENCFF893KGM.bigBed GRCh38 released ENCFF396NYQ bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF634LBE 13332567 ENCODE Processing Pipeline ef00daf7791607afeee8bf25ae5e3455 https://www.encodeproject.org/files/ENCFF396NYQ/@@download/ENCFF396NYQ.bigBed GRCh38 released ENCFF379HUY bigBed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF599TOC 13252668 ENCODE Processing Pipeline 26b9a66bd505abdf04ca19179ff795d1 https://www.encodeproject.org/files/ENCFF379HUY/@@download/ENCFF379HUY.bigBed GRCh38 released ENCFF101HMW bed narrowPeak conservative idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF130BQV, ENCFF419RSJ, ENCFF599TOC, ENCFF634LBE 168924 ENCODE Processing Pipeline 009279756e7495aee84f451ffc8843cc https://www.encodeproject.org/files/ENCFF101HMW/@@download/ENCFF101HMW.bed.gz GRCh38 released ENCFF805WGB bigBed narrowPeak conservative idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF101HMW 349260 ENCODE Processing Pipeline f0c6529e552982ba0e656d0bba257de1 https://www.encodeproject.org/files/ENCFF805WGB/@@download/ENCFF805WGB.bigBed GRCh38 released ENCFF343QQE bed narrowPeak optimal idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF130BQV, ENCFF419RSJ, ENCFF599TOC, ENCFF634LBE 211474 ENCODE Processing Pipeline caa2d99f2cf6b8a0eded188d19c71d41 https://www.encodeproject.org/files/ENCFF343QQE/@@download/ENCFF343QQE.bed.gz GRCh38 released ENCFF588AIM bigBed narrowPeak optimal idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF343QQE 494066 ENCODE Processing Pipeline 204f60ec956038f23c0c0f9005d652c9 https://www.encodeproject.org/files/ENCFF588AIM/@@download/ENCFF588AIM.bigBed GRCh38 released ENCFF979VNI bed narrowPeak conservative idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF361MVW, ENCFF380LCN, ENCFF603JPR 137230 ENCODE Processing Pipeline c558e4cab3426894a03cac870b411ff8 https://www.encodeproject.org/files/ENCFF979VNI/@@download/ENCFF979VNI.bed.gz hg19 archived ENCFF456LHH bed narrowPeak optimal idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF361MVW, ENCFF380LCN, ENCFF603JPR 177487 ENCODE Processing Pipeline 282ae8a3ddad3adf5de6b086f9682c33 https://www.encodeproject.org/files/ENCFF456LHH/@@download/ENCFF456LHH.bed.gz hg19 archived ENCFF137HAK bigBed narrowPeak optimal idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF456LHH 363552 ENCODE Processing Pipeline 560fdf4ae3aced7b7e36b742293a8486 https://www.encodeproject.org/files/ENCFF137HAK/@@download/ENCFF137HAK.bigBed hg19 archived ENCFF068IXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF979VNI 304884 ENCODE Processing Pipeline 537628ed13e411d113054d254264cb14 https://www.encodeproject.org/files/ENCFF068IXZ/@@download/ENCFF068IXZ.bigBed hg19 archived ENCFF152OPW bam unfiltered alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDW, ENCFF807MUK 1289501996 ENCODE Processing Pipeline decc83c35b03eb1d7f763855fe349d55 https://www.encodeproject.org/files/ENCFF152OPW/@@download/ENCFF152OPW.bam hg19 released low read length ENCFF190IZD bam unfiltered alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDY, ENCFF807MUK 1523756644 ENCODE Processing Pipeline c5bef7cded77e4e41f9c1331121281c1 https://www.encodeproject.org/files/ENCFF190IZD/@@download/ENCFF190IZD.bam hg19 released low read length ENCFF619YSS bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 539990716 ENCODE Processing Pipeline 13adc93e9d64c099668b461ed7b9bda5 https://www.encodeproject.org/files/ENCFF619YSS/@@download/ENCFF619YSS.bigWig hg19 released low read length ENCFF771QIO bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 487865201 ENCODE Processing Pipeline 9ce4609f1714d907a642dc2ed8f14ecf https://www.encodeproject.org/files/ENCFF771QIO/@@download/ENCFF771QIO.bigWig hg19 released low read length ENCFF681LED bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 570998080 ENCODE Processing Pipeline a8881f4e490be13eb24b09d26e87d943 https://www.encodeproject.org/files/ENCFF681LED/@@download/ENCFF681LED.bigWig hg19 released low read length ENCFF421SSN bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 527905241 ENCODE Processing Pipeline 498314d09b6d1519d0b4c9c836d3672b https://www.encodeproject.org/files/ENCFF421SSN/@@download/ENCFF421SSN.bigWig hg19 released low read length ENCFF066XXM bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 5264643 ENCODE Processing Pipeline 2db813549d06712da009a2f5d76b306e https://www.encodeproject.org/files/ENCFF066XXM/@@download/ENCFF066XXM.bed.gz hg19 released low read length ENCFF223NIO bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 5044012 ENCODE Processing Pipeline b85716ca28d3b4fae85361b75e46ee25 https://www.encodeproject.org/files/ENCFF223NIO/@@download/ENCFF223NIO.bed.gz hg19 released low read length ENCFF739VAD bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF181DZU, ENCFF785DZS, ENCFF817NEK, ENCFF863VMN 6583609 ENCODE Processing Pipeline ed51f46cbb47686c6fe9999b842bb3a8 https://www.encodeproject.org/files/ENCFF739VAD/@@download/ENCFF739VAD.bed.gz hg19 released low read length ENCFF086USC bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF066XXM 11178328 ENCODE Processing Pipeline f26b39971bfe54f8964bb341212ccbba https://www.encodeproject.org/files/ENCFF086USC/@@download/ENCFF086USC.bigBed hg19 released low read length ENCFF106WIY bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF223NIO 11176837 ENCODE Processing Pipeline 930a8fd75502a9ed738cb4b70593157f https://www.encodeproject.org/files/ENCFF106WIY/@@download/ENCFF106WIY.bigBed hg19 released low read length ENCFF663OMZ bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF739VAD 13569562 ENCODE Processing Pipeline 81bf3a9f6210a73d21e81f68efa05a07 https://www.encodeproject.org/files/ENCFF663OMZ/@@download/ENCFF663OMZ.bigBed hg19 released low read length ENCFF415IKT bigBed narrowPeak conservative idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF229MLS 223763 ENCODE Processing Pipeline 126bc9fb5682e707a85e16233cf00c6c https://www.encodeproject.org/files/ENCFF415IKT/@@download/ENCFF415IKT.bigBed hg19 released low read length ENCFF229MLS bed narrowPeak conservative idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF066XXM, ENCFF223NIO, ENCFF739VAD 80412 ENCODE Processing Pipeline ca8ab9888132185a5b20ff7f5d70a0db https://www.encodeproject.org/files/ENCFF229MLS/@@download/ENCFF229MLS.bed.gz hg19 released low read length ENCFF812UZP bed narrowPeak optimal idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF066XXM, ENCFF223NIO, ENCFF739VAD 106548 ENCODE Processing Pipeline a3fbb250e7e665f3d0ad0df37e9a2557 https://www.encodeproject.org/files/ENCFF812UZP/@@download/ENCFF812UZP.bed.gz hg19 released low read length ENCFF723TIV bigBed narrowPeak optimal idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF812UZP 265687 ENCODE Processing Pipeline 267d99f5830ea352c0bb6a8f9c20770b https://www.encodeproject.org/files/ENCFF723TIV/@@download/ENCFF723TIV.bigBed hg19 released low read length ENCFF002EDW fastq reads ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 898988150 Michael Snyder, Stanford b8636d030a7a05480309dce3e949ead5 SRA:SRR5111594 https://www.encodeproject.org/files/ENCFF002EDW/@@download/ENCFF002EDW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECU/ released low read length ENCFF002EDY fastq reads ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 1066304962 Michael Snyder, Stanford bfb1ed341d6dc51146b5f9735b7b55fc SRA:SRR5111595 https://www.encodeproject.org/files/ENCFF002EDY/@@download/ENCFF002EDY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECQ/ released low read length ENCFF181DZU bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDY, ENCFF807MUK 1072622952 ENCODE Processing Pipeline f9012d0a422567df7f75a4bfae176852 https://www.encodeproject.org/files/ENCFF181DZU/@@download/ENCFF181DZU.bam hg19 released low read length ENCFF785DZS bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDW, ENCFF807MUK 931191157 ENCODE Processing Pipeline 8f0cd65687b3be591944bff93b3b448c https://www.encodeproject.org/files/ENCFF785DZS/@@download/ENCFF785DZS.bam hg19 released low read length ENCFF140YTA bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 555878863 ENCODE Processing Pipeline 1cee8400859d14e23f1686bed34b0c72 https://www.encodeproject.org/files/ENCFF140YTA/@@download/ENCFF140YTA.bigWig hg19 archived low read length ENCFF699EIK bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 560885185 ENCODE Processing Pipeline e5fccc10e19660a233174ae0969d7dc8 https://www.encodeproject.org/files/ENCFF699EIK/@@download/ENCFF699EIK.bigWig hg19 archived low read length ENCFF052DXJ bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF181DZU, ENCFF785DZS, ENCFF817NEK, ENCFF863VMN 1169433782 ENCODE Processing Pipeline 9ac1ed19a65b1cddf97c3af859f091bd https://www.encodeproject.org/files/ENCFF052DXJ/@@download/ENCFF052DXJ.bigWig hg19 released low read length ENCFF815GYH bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 492601976 ENCODE Processing Pipeline 244f8db3e01bf7a6b99a0523697447fb https://www.encodeproject.org/files/ENCFF815GYH/@@download/ENCFF815GYH.bigWig hg19 archived low read length ENCFF727XKN bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 515192422 ENCODE Processing Pipeline e4854c4d8878b4cad11773ac599d8de9 https://www.encodeproject.org/files/ENCFF727XKN/@@download/ENCFF727XKN.bigWig hg19 archived low read length ENCFF875SAX bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF181DZU, ENCFF785DZS, ENCFF817NEK, ENCFF863VMN 1095008616 ENCODE Processing Pipeline 3371744a715b7aac407a902ace364a7a https://www.encodeproject.org/files/ENCFF875SAX/@@download/ENCFF875SAX.bigWig hg19 released low read length ENCFF960PIA bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 5334062 ENCODE Processing Pipeline 6c6c40d767dcc141a82a0286cf147280 https://www.encodeproject.org/files/ENCFF960PIA/@@download/ENCFF960PIA.bed.gz hg19 archived low read length ENCFF781QFB bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 5404972 ENCODE Processing Pipeline cb00f9a2d73ea18c89d160bb300a8514 https://www.encodeproject.org/files/ENCFF781QFB/@@download/ENCFF781QFB.bed.gz hg19 archived low read length ENCFF813QEI bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF181DZU, ENCFF785DZS, ENCFF817NEK, ENCFF863VMN 6718355 ENCODE Processing Pipeline 04cf3222a1f4936baf2f0d317f60f65b https://www.encodeproject.org/files/ENCFF813QEI/@@download/ENCFF813QEI.bed.gz hg19 archived low read length ENCFF816ZTP bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF960PIA 11289135 ENCODE Processing Pipeline 01bc17158209b6d8e133b3c10c72bd04 https://www.encodeproject.org/files/ENCFF816ZTP/@@download/ENCFF816ZTP.bigBed hg19 archived low read length ENCFF870IGQ bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF781QFB 11227266 ENCODE Processing Pipeline bfa8f715d6679529d798c8b3bd9a2d3d https://www.encodeproject.org/files/ENCFF870IGQ/@@download/ENCFF870IGQ.bigBed hg19 archived low read length ENCFF030NGS bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF813QEI 13574312 ENCODE Processing Pipeline 23d97bec045b9b7f0ee2eb17d0dee617 https://www.encodeproject.org/files/ENCFF030NGS/@@download/ENCFF030NGS.bigBed hg19 archived low read length ENCFF004EMX bam unfiltered alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDY, ENCFF643CGH 1531270142 ENCODE Processing Pipeline ea7bb22912e1f753f74c12ebd9ece229 https://www.encodeproject.org/files/ENCFF004EMX/@@download/ENCFF004EMX.bam GRCh38 released low read length ENCFF779HZW bam unfiltered alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDW, ENCFF643CGH 1295836993 ENCODE Processing Pipeline 302e196b8e63b6f4c9681fec56a0e897 https://www.encodeproject.org/files/ENCFF779HZW/@@download/ENCFF779HZW.bam GRCh38 released low read length ENCFF125NKO bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDY, ENCFF643CGH 1072167387 ENCODE Processing Pipeline b1bdf4a5a0603909309f12116b221f32 https://www.encodeproject.org/files/ENCFF125NKO/@@download/ENCFF125NKO.bam GRCh38 released low read length ENCFF459UCK bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDW, ENCFF643CGH 930763912 ENCODE Processing Pipeline f0f0ef4df6cff1cb6c9e45f78ff61a82 https://www.encodeproject.org/files/ENCFF459UCK/@@download/ENCFF459UCK.bam GRCh38 released low read length ENCFF516GSL bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF459UCK, ENCFF511RLN 560659792 ENCODE Processing Pipeline 68210b8fd13e599f89c949c11d3ddf73 https://www.encodeproject.org/files/ENCFF516GSL/@@download/ENCFF516GSL.bigWig GRCh38 released low read length ENCFF499PMV bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF125NKO, ENCFF536CTV 684721075 ENCODE Processing Pipeline c3b42c0fa0e1489a35fa0e85d0665eda https://www.encodeproject.org/files/ENCFF499PMV/@@download/ENCFF499PMV.bigWig GRCh38 released low read length ENCFF410HOB bigWig signal p-value ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF125NKO, ENCFF459UCK, ENCFF511RLN, ENCFF536CTV 1280249478 ENCODE Processing Pipeline f97de0f917e0f760ebfff247ad899123 https://www.encodeproject.org/files/ENCFF410HOB/@@download/ENCFF410HOB.bigWig GRCh38 released low read length ENCFF563HBV bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF459UCK, ENCFF511RLN 506626434 ENCODE Processing Pipeline f34b96e4e71c8c45f32456756797329d https://www.encodeproject.org/files/ENCFF563HBV/@@download/ENCFF563HBV.bigWig GRCh38 released low read length ENCFF808MBM bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF125NKO, ENCFF536CTV 507685764 ENCODE Processing Pipeline c614d1ea667ffa558aa73e3551242266 https://www.encodeproject.org/files/ENCFF808MBM/@@download/ENCFF808MBM.bigWig GRCh38 released low read length ENCFF688OAQ bigWig fold change over control ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF125NKO, ENCFF459UCK, ENCFF511RLN, ENCFF536CTV 1144623215 ENCODE Processing Pipeline 7063bf8802fa326f534b91b57ca650cd https://www.encodeproject.org/files/ENCFF688OAQ/@@download/ENCFF688OAQ.bigWig GRCh38 released low read length ENCFF388LBQ bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF459UCK, ENCFF511RLN 5044702 ENCODE Processing Pipeline 87ab479a2ebdbb8d0f8ca56c43ea2702 https://www.encodeproject.org/files/ENCFF388LBQ/@@download/ENCFF388LBQ.bed.gz GRCh38 released low read length ENCFF512LRJ bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF125NKO, ENCFF536CTV 5259503 ENCODE Processing Pipeline 3faabbeb37af696c012cf9694b736156 https://www.encodeproject.org/files/ENCFF512LRJ/@@download/ENCFF512LRJ.bed.gz GRCh38 released low read length ENCFF512FBH bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF388LBQ 11184284 ENCODE Processing Pipeline aeb13a2da329658b636e31a37b1e5899 https://www.encodeproject.org/files/ENCFF512FBH/@@download/ENCFF512FBH.bigBed GRCh38 released low read length ENCFF120CVU bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF125NKO, ENCFF459UCK, ENCFF511RLN, ENCFF536CTV 6581688 ENCODE Processing Pipeline c51d5da7bed228147d86e28f31c41eff https://www.encodeproject.org/files/ENCFF120CVU/@@download/ENCFF120CVU.bed.gz GRCh38 released low read length ENCFF832OIV bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF512LRJ 11179944 ENCODE Processing Pipeline 9b51f1f05baaed09105eea8ddea08a73 https://www.encodeproject.org/files/ENCFF832OIV/@@download/ENCFF832OIV.bigBed GRCh38 released low read length ENCFF640ZQZ bigBed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF120CVU 13574190 ENCODE Processing Pipeline f60c941692fd88279c517269b082407a https://www.encodeproject.org/files/ENCFF640ZQZ/@@download/ENCFF640ZQZ.bigBed GRCh38 released low read length ENCFF347MTY bed narrowPeak conservative idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF120CVU, ENCFF388LBQ, ENCFF419RSJ, ENCFF512LRJ 80553 ENCODE Processing Pipeline 5b2eec713c30f1bb3c1a718efb60423b https://www.encodeproject.org/files/ENCFF347MTY/@@download/ENCFF347MTY.bed.gz GRCh38 released low read length ENCFF010HTK bigBed narrowPeak conservative idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF347MTY 223692 ENCODE Processing Pipeline 929aa967b514c8b33d3c6e539c371e0c https://www.encodeproject.org/files/ENCFF010HTK/@@download/ENCFF010HTK.bigBed GRCh38 released low read length ENCFF204PTM bigBed narrowPeak optimal idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF193DQZ 263427 ENCODE Processing Pipeline a2f2a489317710529a6bff6ec1e6a14e https://www.encodeproject.org/files/ENCFF204PTM/@@download/ENCFF204PTM.bigBed GRCh38 released low read length ENCFF193DQZ bed narrowPeak optimal idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF120CVU, ENCFF388LBQ, ENCFF419RSJ, ENCFF512LRJ 104472 ENCODE Processing Pipeline 3b01c7e4c8ab97f2830d02b5e305eeae https://www.encodeproject.org/files/ENCFF193DQZ/@@download/ENCFF193DQZ.bed.gz GRCh38 released low read length ENCFF361WYB bed narrowPeak conservative idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF781QFB, ENCFF813QEI, ENCFF960PIA 71820 ENCODE Processing Pipeline 30c3ff1f21d0beb17ab4e885978c874e https://www.encodeproject.org/files/ENCFF361WYB/@@download/ENCFF361WYB.bed.gz hg19 archived low read length ENCFF951GBU bigBed narrowPeak optimal idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF423RVT 197574 ENCODE Processing Pipeline 1ca6ff0115a8ba7a6ca9a91e5f4f3c25 https://www.encodeproject.org/files/ENCFF951GBU/@@download/ENCFF951GBU.bigBed hg19 archived low read length ENCFF665APF bigBed narrowPeak conservative idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF361WYB 172366 ENCODE Processing Pipeline 2ee276a83f7b4ca5a0da02d1f2a9a37f https://www.encodeproject.org/files/ENCFF665APF/@@download/ENCFF665APF.bigBed hg19 archived low read length ENCFF423RVT bed narrowPeak optimal idr thresholded peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF781QFB, ENCFF813QEI, ENCFF960PIA 90832 ENCODE Processing Pipeline 3f4887fde95048df756c56997b111299 https://www.encodeproject.org/files/ENCFF423RVT/@@download/ENCFF423RVT.bed.gz hg19 archived low read length ENCFF002DZZ fastq reads ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 552742435 Michael Snyder, Stanford 4201c3569c975ee25d434bbd1c381362 SRA:SRR5111868 https://www.encodeproject.org/files/ENCFF002DZZ/@@download/ENCFF002DZZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF002EAB fastq reads ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 783066297 Michael Snyder, Stanford 5573e609dcf0a453401b52c3838c061e SRA:SRR5111867 https://www.encodeproject.org/files/ENCFF002EAB/@@download/ENCFF002EAB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF035OKO bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAB, ENCFF807MUK 728740191 ENCODE Processing Pipeline c0eedd991d6737dc326b1e67258de368 https://www.encodeproject.org/files/ENCFF035OKO/@@download/ENCFF035OKO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF378MVM bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZZ, ENCFF807MUK 532887530 ENCODE Processing Pipeline d9ad097e8f6d4c8b0d81a8d43ab48013 https://www.encodeproject.org/files/ENCFF378MVM/@@download/ENCFF378MVM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF355CFQ bigWig signal p-value ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF378MVM, ENCFF425JYG 461031769 ENCODE Processing Pipeline 2acafdb36cc8272ccadc89cff81d733b https://www.encodeproject.org/files/ENCFF355CFQ/@@download/ENCFF355CFQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF213QLD bigWig signal p-value ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF035OKO, ENCFF378MVM, ENCFF425JYG, ENCFF863STQ 968688885 ENCODE Processing Pipeline 14c40292c265d2e27b762d1884e4c34a https://www.encodeproject.org/files/ENCFF213QLD/@@download/ENCFF213QLD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF922MVA bigWig signal p-value ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF035OKO, ENCFF863STQ 523693994 ENCODE Processing Pipeline cd5a6974d5a024cee2df59a75acd954e https://www.encodeproject.org/files/ENCFF922MVA/@@download/ENCFF922MVA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF277YQR bigWig fold change over control ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF035OKO, ENCFF863STQ 432876075 ENCODE Processing Pipeline 80c8caf18dba35da4cd641b48b10f637 https://www.encodeproject.org/files/ENCFF277YQR/@@download/ENCFF277YQR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF587UYT bigWig fold change over control ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF378MVM, ENCFF425JYG 331712889 ENCODE Processing Pipeline 52c29685d9404a974296d917dc2e217d https://www.encodeproject.org/files/ENCFF587UYT/@@download/ENCFF587UYT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF150OES bigWig fold change over control ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF035OKO, ENCFF378MVM, ENCFF425JYG, ENCFF863STQ 889732146 ENCODE Processing Pipeline 51992c5c73ab9776cbac8e1cf86aedbf https://www.encodeproject.org/files/ENCFF150OES/@@download/ENCFF150OES.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF522IVZ bam unfiltered alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZZ, ENCFF643CGH 809978369 ENCODE Processing Pipeline ee69f963d4887854adac1bdc39a254f8 https://www.encodeproject.org/files/ENCFF522IVZ/@@download/ENCFF522IVZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF586LSC bam unfiltered alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAB, ENCFF643CGH 1123148987 ENCODE Processing Pipeline 3e2f1391d43b48a82f66aa670841b4cd https://www.encodeproject.org/files/ENCFF586LSC/@@download/ENCFF586LSC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF757GXN bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZZ, ENCFF643CGH 532705308 ENCODE Processing Pipeline 12b77821e48c829b663128beed965e5f https://www.encodeproject.org/files/ENCFF757GXN/@@download/ENCFF757GXN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF826GGN bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAB, ENCFF643CGH 728549072 ENCODE Processing Pipeline 9699a4e5bc489e34049166345cbfec9d https://www.encodeproject.org/files/ENCFF826GGN/@@download/ENCFF826GGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF683NDW bigWig signal p-value ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF826GGN, ENCFF918AJW 598180772 ENCODE Processing Pipeline f1dc0bfcf9036a71014558fe22397744 https://www.encodeproject.org/files/ENCFF683NDW/@@download/ENCFF683NDW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF253WHD bigWig signal p-value ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF757GXN, ENCFF949XNJ 491509272 ENCODE Processing Pipeline 16ff460f4441e1d5309e11eefdb41368 https://www.encodeproject.org/files/ENCFF253WHD/@@download/ENCFF253WHD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF041BZN bigWig signal p-value ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF757GXN, ENCFF826GGN, ENCFF918AJW, ENCFF949XNJ 909861494 ENCODE Processing Pipeline 85c7ce08fe6da2a8aecdde99fef49c33 https://www.encodeproject.org/files/ENCFF041BZN/@@download/ENCFF041BZN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF547KVE bigWig fold change over control ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF826GGN, ENCFF918AJW 432112029 ENCODE Processing Pipeline cb40660d3733dd147943c79ce1007660 https://www.encodeproject.org/files/ENCFF547KVE/@@download/ENCFF547KVE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF721WCM bigWig fold change over control ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF757GXN, ENCFF949XNJ 332526546 ENCODE Processing Pipeline 47bc2d22203e3bde4499f60acb902c4a https://www.encodeproject.org/files/ENCFF721WCM/@@download/ENCFF721WCM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF060SYK bigWig fold change over control ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF757GXN, ENCFF826GGN, ENCFF918AJW, ENCFF949XNJ 905815863 ENCODE Processing Pipeline ec983285484e20e346e01634fa0a462f https://www.encodeproject.org/files/ENCFF060SYK/@@download/ENCFF060SYK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF649GJB bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF757GXN, ENCFF949XNJ 4027464 ENCODE Processing Pipeline b40fb962795014244b65e690efe520ce https://www.encodeproject.org/files/ENCFF649GJB/@@download/ENCFF649GJB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF809LIA bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF826GGN, ENCFF918AJW 3804196 ENCODE Processing Pipeline d60d4c87f007cb8d6831a74a1f51e9ca https://www.encodeproject.org/files/ENCFF809LIA/@@download/ENCFF809LIA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF554SLQ bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF757GXN, ENCFF826GGN, ENCFF918AJW, ENCFF949XNJ 5023811 ENCODE Processing Pipeline a4547a447781f53f27bec98a447f7fb2 https://www.encodeproject.org/files/ENCFF554SLQ/@@download/ENCFF554SLQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF660ZXF bigBed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF809LIA 8678806 ENCODE Processing Pipeline 4446453be1bee09c448a51043434663a https://www.encodeproject.org/files/ENCFF660ZXF/@@download/ENCFF660ZXF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF053ECZ bigBed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF649GJB 10528566 ENCODE Processing Pipeline f086082f98b80686ddef1ad1bf0f5dbc https://www.encodeproject.org/files/ENCFF053ECZ/@@download/ENCFF053ECZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF983PRJ bigBed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF554SLQ 11562902 ENCODE Processing Pipeline af33ce1ebd24410bfa36a5293c886c88 https://www.encodeproject.org/files/ENCFF983PRJ/@@download/ENCFF983PRJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF307MMO bed narrowPeak conservative idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF419RSJ, ENCFF554SLQ, ENCFF649GJB, ENCFF809LIA 6950 ENCODE Processing Pipeline a1e7d1edae83513702256a015f0f6d07 https://www.encodeproject.org/files/ENCFF307MMO/@@download/ENCFF307MMO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF590FYG bigBed narrowPeak conservative idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF307MMO 53746 ENCODE Processing Pipeline 517a3b1ea25d00964413a4ebbb75f761 https://www.encodeproject.org/files/ENCFF590FYG/@@download/ENCFF590FYG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF605JXG bed narrowPeak optimal idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF419RSJ, ENCFF554SLQ, ENCFF649GJB, ENCFF809LIA 8573 ENCODE Processing Pipeline d73bab6cd707199cbc48da0ad5e6f7e3 https://www.encodeproject.org/files/ENCFF605JXG/@@download/ENCFF605JXG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF659QEY bigBed narrowPeak optimal idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF605JXG 65577 ENCODE Processing Pipeline 3b3011033f2f6042d5483e8106ce2836 https://www.encodeproject.org/files/ENCFF659QEY/@@download/ENCFF659QEY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF939BBC bam unfiltered alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAB, ENCFF807MUK 1117319301 ENCODE Processing Pipeline da95849d9093ff78a576eccada94f8f9 https://www.encodeproject.org/files/ENCFF939BBC/@@download/ENCFF939BBC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF331FVP bam unfiltered alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZZ, ENCFF807MUK 805676130 ENCODE Processing Pipeline 39f166d366b30c6106ec7e592220365d https://www.encodeproject.org/files/ENCFF331FVP/@@download/ENCFF331FVP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF044AVI bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF035OKO, ENCFF863STQ 3769598 ENCODE Processing Pipeline d0e7813cc5fb470265ea607df89a1c7c https://www.encodeproject.org/files/ENCFF044AVI/@@download/ENCFF044AVI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF056BGC bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF378MVM, ENCFF425JYG 4040774 ENCODE Processing Pipeline d3380de861e2d9a7490db21bfe96b36c https://www.encodeproject.org/files/ENCFF056BGC/@@download/ENCFF056BGC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF447FCQ bigBed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF294MMU 11550464 ENCODE Processing Pipeline 2e0777fd4bc63536af2b6a574d63e8fb https://www.encodeproject.org/files/ENCFF447FCQ/@@download/ENCFF447FCQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF601OOK bigBed narrowPeak conservative idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF085VAA 56494 ENCODE Processing Pipeline cad4cc59595415dd3cb79d320057356c https://www.encodeproject.org/files/ENCFF601OOK/@@download/ENCFF601OOK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF747BWM bigBed narrowPeak optimal idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF282AEY 59024 ENCODE Processing Pipeline 57521710248497e808b1b35046ce60cb https://www.encodeproject.org/files/ENCFF747BWM/@@download/ENCFF747BWM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF805ICR bigBed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 ENCFF056BGC 10528010 ENCODE Processing Pipeline 8f4d6a0b2359e2d26e248465e389d808 https://www.encodeproject.org/files/ENCFF805ICR/@@download/ENCFF805ICR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF085VAA bed narrowPeak conservative idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF044AVI, ENCFF056BGC, ENCFF294MMU 7691 ENCODE Processing Pipeline b4fdf2ced49160836d71daa1d06730fc https://www.encodeproject.org/files/ENCFF085VAA/@@download/ENCFF085VAA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF294MMU bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF035OKO, ENCFF378MVM, ENCFF425JYG, ENCFF863STQ 5086787 ENCODE Processing Pipeline 433a233b06473e6a2e9a4f9a62614ef4 https://www.encodeproject.org/files/ENCFF294MMU/@@download/ENCFF294MMU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF006CLX bigBed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF044AVI 8528392 ENCODE Processing Pipeline 3a56fdc6c13c9bfad791a5b76092b229 https://www.encodeproject.org/files/ENCFF006CLX/@@download/ENCFF006CLX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF282AEY bed narrowPeak optimal idr thresholded peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF044AVI, ENCFF056BGC, ENCFF294MMU 9345 ENCODE Processing Pipeline 406629fca7d1601a984475d602c7c8cb https://www.encodeproject.org/files/ENCFF282AEY/@@download/ENCFF282AEY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF847NGV bam unfiltered alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 100 ENCFF489LNL, ENCFF807MUK, ENCFF974DWD 6255730186 ENCODE Processing Pipeline 7089e56874ff54807b781ea056f30cff https://www.encodeproject.org/files/ENCFF847NGV/@@download/ENCFF847NGV.bam hg19 released ENCFF385DFA bam unfiltered alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 100 ENCFF807MUK, ENCFF862EVT, ENCFF917SHU 5570317399 ENCODE Processing Pipeline 3ea78c8d4bd4ea6e3ee21e754de454a7 https://www.encodeproject.org/files/ENCFF385DFA/@@download/ENCFF385DFA.bam hg19 released ENCFF974DWD fastq reads ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 1 100 paired-ended 2 ENCFF489LNL 2859889151 Michael Snyder, Stanford e9b200475718c455fafc6d3cb0cc1ceb SRA:SRR5111462 https://www.encodeproject.org/files/ENCFF974DWD/@@download/ENCFF974DWD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released ENCFF862EVT fastq reads ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 1 100 paired-ended 2 ENCFF917SHU 2524702911 Michael Snyder, Stanford 76a1b73a9d9c2aacd79fac3a7b0b9316 SRA:SRR5111463 https://www.encodeproject.org/files/ENCFF862EVT/@@download/ENCFF862EVT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released ENCFF489LNL fastq reads ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 1 100 paired-ended 1 ENCFF974DWD 2805559253 Michael Snyder, Stanford 77de8824e17ea1646720cc95593060f5 SRA:SRR5111462 https://www.encodeproject.org/files/ENCFF489LNL/@@download/ENCFF489LNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released ENCFF917SHU fastq reads ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 1 100 paired-ended 1 ENCFF862EVT 2479971298 Michael Snyder, Stanford 691b06a56527b00a4cf7814cef121ba8 SRA:SRR5111463 https://www.encodeproject.org/files/ENCFF917SHU/@@download/ENCFF917SHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released ENCFF135DLX bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 100 ENCFF807MUK, ENCFF862EVT, ENCFF917SHU 4651421090 ENCODE Processing Pipeline a772c931ec31ea9dce161dd765c10848 https://www.encodeproject.org/files/ENCFF135DLX/@@download/ENCFF135DLX.bam hg19 released ENCFF094VXQ bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 100 ENCFF489LNL, ENCFF807MUK, ENCFF974DWD 5237817881 ENCODE Processing Pipeline 8694fce17383d09fbb5d2f7996a0dabc https://www.encodeproject.org/files/ENCFF094VXQ/@@download/ENCFF094VXQ.bam hg19 released ENCFF346BXZ bigWig signal p-value ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF094VXQ, ENCFF449NNE 1137638643 ENCODE Processing Pipeline e18fa168fd2c13dbe793368722029f0e https://www.encodeproject.org/files/ENCFF346BXZ/@@download/ENCFF346BXZ.bigWig hg19 released ENCFF652YZS bigWig signal p-value ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF135DLX, ENCFF999EQI 948709264 ENCODE Processing Pipeline 20e68869a747fc659908bc26e0309230 https://www.encodeproject.org/files/ENCFF652YZS/@@download/ENCFF652YZS.bigWig hg19 released ENCFF591BOI bigWig signal p-value ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF094VXQ, ENCFF135DLX, ENCFF449NNE, ENCFF999EQI 1641258230 ENCODE Processing Pipeline 7a5b6ef5835f0b49becdbf8ecdb966e6 https://www.encodeproject.org/files/ENCFF591BOI/@@download/ENCFF591BOI.bigWig hg19 released ENCFF937SHJ bigWig fold change over control ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF094VXQ, ENCFF449NNE 1313764870 ENCODE Processing Pipeline 8947eeb450670968f469de5752ede2a3 https://www.encodeproject.org/files/ENCFF937SHJ/@@download/ENCFF937SHJ.bigWig hg19 released ENCFF279MFT bigWig fold change over control ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF135DLX, ENCFF999EQI 1109185525 ENCODE Processing Pipeline 454b340ae0a72b7a2c434e5988c16e8f https://www.encodeproject.org/files/ENCFF279MFT/@@download/ENCFF279MFT.bigWig hg19 released ENCFF520QJN bigWig fold change over control ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF094VXQ, ENCFF135DLX, ENCFF449NNE, ENCFF999EQI 2151541738 ENCODE Processing Pipeline bfb02724ca5053b88f38db90d647039b https://www.encodeproject.org/files/ENCFF520QJN/@@download/ENCFF520QJN.bigWig hg19 released ENCFF973BDU bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF094VXQ, ENCFF449NNE 6388312 ENCODE Processing Pipeline c9f95953fcd2b1daed4779f4ac49debe https://www.encodeproject.org/files/ENCFF973BDU/@@download/ENCFF973BDU.bed.gz hg19 released ENCFF514KXZ bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF094VXQ, ENCFF135DLX, ENCFF449NNE, ENCFF999EQI 7130195 ENCODE Processing Pipeline 3f441acd783f9bf5c6fa436108bd2dc6 https://www.encodeproject.org/files/ENCFF514KXZ/@@download/ENCFF514KXZ.bed.gz hg19 released ENCFF686QQS bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF135DLX, ENCFF999EQI 6223707 ENCODE Processing Pipeline 8f075c19e6cb6fdfc26ea1a2932726d1 https://www.encodeproject.org/files/ENCFF686QQS/@@download/ENCFF686QQS.bed.gz hg19 released ENCFF926OEP bigBed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF686QQS 11313403 ENCODE Processing Pipeline 61a2b6a5fee98da89d4808cd17ed3a61 https://www.encodeproject.org/files/ENCFF926OEP/@@download/ENCFF926OEP.bigBed hg19 released ENCFF044EUF bigBed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF973BDU 11349170 ENCODE Processing Pipeline 7885df9fd12e65caa092ba539b35cb13 https://www.encodeproject.org/files/ENCFF044EUF/@@download/ENCFF044EUF.bigBed hg19 released ENCFF313DQG bigBed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF514KXZ 11287567 ENCODE Processing Pipeline 6abbc044785edffca6fa1d6d1312288b https://www.encodeproject.org/files/ENCFF313DQG/@@download/ENCFF313DQG.bigBed hg19 released ENCFF993SHD bigBed narrowPeak conservative idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF768SFH 176662 ENCODE Processing Pipeline baa67625ffcd68de2febdf5f8bbcd9f8 https://www.encodeproject.org/files/ENCFF993SHD/@@download/ENCFF993SHD.bigBed hg19 released ENCFF768SFH bed narrowPeak conservative idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF514KXZ, ENCFF686QQS, ENCFF973BDU 63228 ENCODE Processing Pipeline bbce85a072efdd926a8da2b7c58d3c54 https://www.encodeproject.org/files/ENCFF768SFH/@@download/ENCFF768SFH.bed.gz hg19 released ENCFF503AZK bed narrowPeak optimal idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF001TDO, ENCFF514KXZ, ENCFF686QQS, ENCFF973BDU 122502 ENCODE Processing Pipeline 524e5189e3cc154582971252084975a0 https://www.encodeproject.org/files/ENCFF503AZK/@@download/ENCFF503AZK.bed.gz hg19 released ENCFF611IKP bigBed narrowPeak optimal idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF503AZK 271755 ENCODE Processing Pipeline a1e84e895d60abfd143fb32356472012 https://www.encodeproject.org/files/ENCFF611IKP/@@download/ENCFF611IKP.bigBed hg19 released ENCFF633RNP bam unfiltered alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 100 ENCFF643CGH, ENCFF862EVT, ENCFF917SHU 5581949191 ENCODE Processing Pipeline f40ce926fa795caaac8ac039b70e35f8 https://www.encodeproject.org/files/ENCFF633RNP/@@download/ENCFF633RNP.bam GRCh38 released ENCFF279VWS bam unfiltered alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 100 ENCFF489LNL, ENCFF643CGH, ENCFF974DWD 6268387215 ENCODE Processing Pipeline 12f6db90faf41d1a002f1cbcba2ad12c https://www.encodeproject.org/files/ENCFF279VWS/@@download/ENCFF279VWS.bam GRCh38 released ENCFF570MLW bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 100 ENCFF643CGH, ENCFF862EVT, ENCFF917SHU 4665229534 ENCODE Processing Pipeline 99b25e66471fc6509004321c0d2517ac https://www.encodeproject.org/files/ENCFF570MLW/@@download/ENCFF570MLW.bam GRCh38 released ENCFF524WHV bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 100 ENCFF489LNL, ENCFF643CGH, ENCFF974DWD 5251949049 ENCODE Processing Pipeline c4b9898d7e403d490b19d7a6038b989a https://www.encodeproject.org/files/ENCFF524WHV/@@download/ENCFF524WHV.bam GRCh38 released ENCFF277BMR bigWig signal p-value ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF190EPQ, ENCFF524WHV 1310816145 ENCODE Processing Pipeline e7f6ddd4542a9c1e9aa6a761645edb07 https://www.encodeproject.org/files/ENCFF277BMR/@@download/ENCFF277BMR.bigWig GRCh38 released ENCFF823EAA bigWig signal p-value ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF570MLW, ENCFF950AXC 1152698752 ENCODE Processing Pipeline ee810fac14537d6f7c4abf29c72c2555 https://www.encodeproject.org/files/ENCFF823EAA/@@download/ENCFF823EAA.bigWig GRCh38 released ENCFF789BVK bigWig signal p-value ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF190EPQ, ENCFF524WHV, ENCFF570MLW, ENCFF950AXC 2134781636 ENCODE Processing Pipeline 37631e1fa588dc3549e69d3e397d0a85 https://www.encodeproject.org/files/ENCFF789BVK/@@download/ENCFF789BVK.bigWig GRCh38 released ENCFF699KIG bigWig fold change over control ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF190EPQ, ENCFF524WHV 1314064277 ENCODE Processing Pipeline 9ebd6fecf2982c7a98545012e6361e5a https://www.encodeproject.org/files/ENCFF699KIG/@@download/ENCFF699KIG.bigWig GRCh38 released ENCFF998XEH bigWig fold change over control ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF570MLW, ENCFF950AXC 1101120996 ENCODE Processing Pipeline 27c5555537562887d021e525318ab04d https://www.encodeproject.org/files/ENCFF998XEH/@@download/ENCFF998XEH.bigWig GRCh38 released ENCFF576URK bigWig fold change over control ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF190EPQ, ENCFF524WHV, ENCFF570MLW, ENCFF950AXC 2137712816 ENCODE Processing Pipeline 7713a95a13ab46e0e5cdde3862035093 https://www.encodeproject.org/files/ENCFF576URK/@@download/ENCFF576URK.bigWig GRCh38 released ENCFF670XXW bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF570MLW, ENCFF950AXC 6043993 ENCODE Processing Pipeline 7f30e2cdd0eb13d89223ed6fe52c015c https://www.encodeproject.org/files/ENCFF670XXW/@@download/ENCFF670XXW.bed.gz GRCh38 released ENCFF282BNQ bigBed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF670XXW 11311143 ENCODE Processing Pipeline dd3a6df5630abd988fa093d562b6410d https://www.encodeproject.org/files/ENCFF282BNQ/@@download/ENCFF282BNQ.bigBed GRCh38 released ENCFF980OKW bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF190EPQ, ENCFF524WHV 6181670 ENCODE Processing Pipeline d4fe06c105da4bff72525a55c84879d8 https://www.encodeproject.org/files/ENCFF980OKW/@@download/ENCFF980OKW.bed.gz GRCh38 released ENCFF472QOS bigBed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF980OKW 11354963 ENCODE Processing Pipeline 5f68b41e29fab4c933a59c7adb5870b3 https://www.encodeproject.org/files/ENCFF472QOS/@@download/ENCFF472QOS.bigBed GRCh38 released ENCFF531TPG bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF190EPQ, ENCFF524WHV, ENCFF570MLW, ENCFF950AXC 7087843 ENCODE Processing Pipeline 49212fd0d43e47738385e21bd758e08c https://www.encodeproject.org/files/ENCFF531TPG/@@download/ENCFF531TPG.bed.gz GRCh38 released ENCFF263LCQ bigBed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF531TPG 11307498 ENCODE Processing Pipeline 7de80e5a6a7aa5e0777900d3c040d677 https://www.encodeproject.org/files/ENCFF263LCQ/@@download/ENCFF263LCQ.bigBed GRCh38 released ENCFF182XZZ bed narrowPeak optimal idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF531TPG, ENCFF670XXW, ENCFF980OKW 127522 ENCODE Processing Pipeline c429ffa19c9b84283d2a2ce399d149ec https://www.encodeproject.org/files/ENCFF182XZZ/@@download/ENCFF182XZZ.bed.gz GRCh38 released ENCFF492LBG bigBed narrowPeak conservative idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF499RWL 186180 ENCODE Processing Pipeline d45ce4bb0e42ce0864bc1aa8dd52440f https://www.encodeproject.org/files/ENCFF492LBG/@@download/ENCFF492LBG.bigBed GRCh38 released ENCFF499RWL bed narrowPeak conservative idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF531TPG, ENCFF670XXW, ENCFF980OKW 67397 ENCODE Processing Pipeline 1bb679c0c69980b1fae6f714c4ea104c https://www.encodeproject.org/files/ENCFF499RWL/@@download/ENCFF499RWL.bed.gz GRCh38 released ENCFF734CEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1, 2 ENCFF182XZZ 283135 ENCODE Processing Pipeline 8a14359db5cc57decfc83b82adc595ad https://www.encodeproject.org/files/ENCFF734CEJ/@@download/ENCFF734CEJ.bigBed GRCh38 released ENCFF701UNE fastq reads ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 2 ENCFF191HHO 2670311712 Michael Snyder, Stanford ca7b90b4deabab38401089ad075139a8 SRA:SRR6213729 https://www.encodeproject.org/files/ENCFF701UNE/@@download/ENCFF701UNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF790RTP fastq reads ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 1 ENCFF525HHM 2899515769 Michael Snyder, Stanford 788bb9c79f5246c097a36b046649dd41 SRA:SRR6213728 https://www.encodeproject.org/files/ENCFF790RTP/@@download/ENCFF790RTP.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF525HHM fastq reads ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 1 101 paired-ended 2 ENCFF790RTP 3012055147 Michael Snyder, Stanford cde418cb9b76df68e012fef2980c83e9 SRA:SRR6213728 https://www.encodeproject.org/files/ENCFF525HHM/@@download/ENCFF525HHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF191HHO fastq reads ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 1 101 paired-ended 1 ENCFF701UNE 2644309520 Michael Snyder, Stanford 564487d9d5b8b2a78648784a2433a802 SRA:SRR6213729 https://www.encodeproject.org/files/ENCFF191HHO/@@download/ENCFF191HHO.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF623FRA bam unfiltered alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF525HHM, ENCFF790RTP, ENCFF807MUK 5883354552 ENCODE Processing Pipeline 930d33cedab6c6a2bb406b728f8f3c11 https://www.encodeproject.org/files/ENCFF623FRA/@@download/ENCFF623FRA.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF629LJM bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF525HHM, ENCFF790RTP, ENCFF807MUK 4471484902 ENCODE Processing Pipeline f5d485c870cd6f464df02decbc745296 https://www.encodeproject.org/files/ENCFF629LJM/@@download/ENCFF629LJM.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF200SDD bam unfiltered alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF525HHM, ENCFF643CGH, ENCFF790RTP 5886827798 ENCODE Processing Pipeline b5f4e5bb2ac83efd645b6a982b5178fc https://www.encodeproject.org/files/ENCFF200SDD/@@download/ENCFF200SDD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF082MFY bam unfiltered alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF191HHO, ENCFF701UNE, ENCFF807MUK 5353753391 ENCODE Processing Pipeline 883943a2ec2b9faedc8f2eea7ded5c8c https://www.encodeproject.org/files/ENCFF082MFY/@@download/ENCFF082MFY.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF357BNI bam unfiltered alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF191HHO, ENCFF643CGH, ENCFF701UNE 5361434726 ENCODE Processing Pipeline 4ef7c2e0d8e19d508639b5994370ea90 https://www.encodeproject.org/files/ENCFF357BNI/@@download/ENCFF357BNI.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF265DSL bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF191HHO, ENCFF701UNE, ENCFF807MUK 4578801950 ENCODE Processing Pipeline cc0dd2d505beef4cf9b8fe9d43655aa3 https://www.encodeproject.org/files/ENCFF265DSL/@@download/ENCFF265DSL.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF886NRG bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF525HHM, ENCFF643CGH, ENCFF790RTP 4474269761 ENCODE Processing Pipeline 65b778621dc6b0fe302ef0d962fd6a54 https://www.encodeproject.org/files/ENCFF886NRG/@@download/ENCFF886NRG.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF344TIM bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF191HHO, ENCFF643CGH, ENCFF701UNE 4581009061 ENCODE Processing Pipeline a9c5daf3e547a69c8c10b5a91bb75e75 https://www.encodeproject.org/files/ENCFF344TIM/@@download/ENCFF344TIM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF418JNC bigWig signal p-value ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF265DSL 1517976416 ENCODE Processing Pipeline b717dc2454f39083e22af6e7a874279e https://www.encodeproject.org/files/ENCFF418JNC/@@download/ENCFF418JNC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF149DHY bigWig signal p-value ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF344TIM 1482710176 ENCODE Processing Pipeline 06e138f9fab60aec6e7479e3490c1daa https://www.encodeproject.org/files/ENCFF149DHY/@@download/ENCFF149DHY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF779OEU bigWig signal p-value ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF886NRG 1180313422 ENCODE Processing Pipeline 1742479666cb5d7f28d3c848f95aaa96 https://www.encodeproject.org/files/ENCFF779OEU/@@download/ENCFF779OEU.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF912VDQ bigWig signal p-value ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF344TIM, ENCFF886NRG 1825106215 ENCODE Processing Pipeline 855440ead984419f444115783758103b https://www.encodeproject.org/files/ENCFF912VDQ/@@download/ENCFF912VDQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF348YYR bigWig signal p-value ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF629LJM 1335282036 ENCODE Processing Pipeline 00129d81fef28fcfd317c8bf5b8e283f https://www.encodeproject.org/files/ENCFF348YYR/@@download/ENCFF348YYR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF672OSA bigWig signal p-value ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF265DSL, ENCFF629LJM 1855943482 ENCODE Processing Pipeline 4d92471d15b29e53bc7d03bbd0aa3c4b https://www.encodeproject.org/files/ENCFF672OSA/@@download/ENCFF672OSA.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF592LZQ bigWig fold change over control ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF886NRG 1383977582 ENCODE Processing Pipeline 33d8a1f2dd75aa1bcb6d5b44187102b2 https://www.encodeproject.org/files/ENCFF592LZQ/@@download/ENCFF592LZQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF726RNX bigWig fold change over control ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF344TIM 1428253915 ENCODE Processing Pipeline 67bb5796b8bca7916e0daa6fd9d622a8 https://www.encodeproject.org/files/ENCFF726RNX/@@download/ENCFF726RNX.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF495DXQ bigWig fold change over control ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF265DSL 1416052454 ENCODE Processing Pipeline fd05b6b310261100d2986ecde465dff5 https://www.encodeproject.org/files/ENCFF495DXQ/@@download/ENCFF495DXQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF070CED bigWig fold change over control ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF629LJM 1382439101 ENCODE Processing Pipeline bd202ff0c2bc7364abcaefc0ea6c551b https://www.encodeproject.org/files/ENCFF070CED/@@download/ENCFF070CED.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF822QVL bigWig fold change over control ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF344TIM, ENCFF886NRG 1977521856 ENCODE Processing Pipeline ad9be2ba5d7417cbcef1514197886403 https://www.encodeproject.org/files/ENCFF822QVL/@@download/ENCFF822QVL.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF143WDE bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF886NRG 6520024 ENCODE Processing Pipeline 734a6f57276197cb11a72ca1fa063e11 https://www.encodeproject.org/files/ENCFF143WDE/@@download/ENCFF143WDE.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF941WPT bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF344TIM, ENCFF886NRG 7093515 ENCODE Processing Pipeline 2aa192584c6eff34f930558f617ca803 https://www.encodeproject.org/files/ENCFF941WPT/@@download/ENCFF941WPT.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF643OHC bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF344TIM 6316569 ENCODE Processing Pipeline 1cfe38467f0b9ef8b50d6cf53e9f8444 https://www.encodeproject.org/files/ENCFF643OHC/@@download/ENCFF643OHC.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF378YYG bigBed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF143WDE 11231139 ENCODE Processing Pipeline 627ce4141cf5fac8e0508d0bfd9c0561 https://www.encodeproject.org/files/ENCFF378YYG/@@download/ENCFF378YYG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF110BYN bigBed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF643OHC 11210221 ENCODE Processing Pipeline d42687d99d23fa53fb6c17e5d878aac9 https://www.encodeproject.org/files/ENCFF110BYN/@@download/ENCFF110BYN.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF075ZZL bigBed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF941WPT 11048162 ENCODE Processing Pipeline 2dd7986c2f4bc03a9c42d8887d384794 https://www.encodeproject.org/files/ENCFF075ZZL/@@download/ENCFF075ZZL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF089ECI bed narrowPeak conservative idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF143WDE, ENCFF419RSJ, ENCFF643OHC, ENCFF941WPT 9155 ENCODE Processing Pipeline 48e79df51fa561d4a807ed998a03c60a https://www.encodeproject.org/files/ENCFF089ECI/@@download/ENCFF089ECI.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF453VZG bigBed narrowPeak conservative idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF089ECI 67114 ENCODE Processing Pipeline cd45bab6455ca2e96965f93e36e7cb52 https://www.encodeproject.org/files/ENCFF453VZG/@@download/ENCFF453VZG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF919WBR bigBed narrowPeak optimal idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF434GYH 108456 ENCODE Processing Pipeline c7f1386bec8347702dd1c00a40f42408 https://www.encodeproject.org/files/ENCFF919WBR/@@download/ENCFF919WBR.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF434GYH bed narrowPeak optimal idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF143WDE, ENCFF419RSJ, ENCFF643OHC, ENCFF941WPT 34337 ENCODE Processing Pipeline 22c9ac585fccf768409bfd631a868055 https://www.encodeproject.org/files/ENCFF434GYH/@@download/ENCFF434GYH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF948XLP bigWig fold change over control ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF265DSL, ENCFF629LJM 1953210304 ENCODE Processing Pipeline 3a490385688289ce09e4d70d0fd10a7f https://www.encodeproject.org/files/ENCFF948XLP/@@download/ENCFF948XLP.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF103UAV bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF629LJM 6518933 ENCODE Processing Pipeline 790138c12dd949b7a47ed3735edc7852 https://www.encodeproject.org/files/ENCFF103UAV/@@download/ENCFF103UAV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF517OFH bigBed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF126FCR 11195685 ENCODE Processing Pipeline a8bdc70549e80c74278c1002182e7d36 https://www.encodeproject.org/files/ENCFF517OFH/@@download/ENCFF517OFH.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF369VZF bigBed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF103UAV 11214939 ENCODE Processing Pipeline 8adae5fd73234a0529548f7439bb8464 https://www.encodeproject.org/files/ENCFF369VZF/@@download/ENCFF369VZF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF126FCR bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF265DSL 6315928 ENCODE Processing Pipeline c9c9b9388c5b82ed02319ae48409aa7f https://www.encodeproject.org/files/ENCFF126FCR/@@download/ENCFF126FCR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF959HCA bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF265DSL, ENCFF629LJM 7080201 ENCODE Processing Pipeline ba5a0ebd8b79d9293f9a966d17885fdd https://www.encodeproject.org/files/ENCFF959HCA/@@download/ENCFF959HCA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF776SWL bed narrowPeak conservative idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF103UAV, ENCFF126FCR, ENCFF959HCA 9283 ENCODE Processing Pipeline e2596c88e66c4317cc38000fb3f82b0a https://www.encodeproject.org/files/ENCFF776SWL/@@download/ENCFF776SWL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF083PFI bigBed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF959HCA 11030725 ENCODE Processing Pipeline 870bd4a000de38843a9d636a453ded74 https://www.encodeproject.org/files/ENCFF083PFI/@@download/ENCFF083PFI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF981AWT bed narrowPeak optimal idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF001TDO, ENCFF103UAV, ENCFF126FCR, ENCFF959HCA 34835 ENCODE Processing Pipeline f3062171677e2505ee6a6742d0ad2f90 https://www.encodeproject.org/files/ENCFF981AWT/@@download/ENCFF981AWT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF722OFS bigBed narrowPeak conservative idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF776SWL 66717 ENCODE Processing Pipeline dff075ec93cad105dce5da3d2bb37399 https://www.encodeproject.org/files/ENCFF722OFS/@@download/ENCFF722OFS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF704NOJ bigBed narrowPeak optimal idr thresholded peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1, 2 ENCFF981AWT 107773 ENCODE Processing Pipeline 11d2441400ab28acc7c101d90c893f42 https://www.encodeproject.org/files/ENCFF704NOJ/@@download/ENCFF704NOJ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF805NNL bam unfiltered alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 36 ENCFF458VHP, ENCFF643CGH 1066519661 ENCODE Processing Pipeline 05554c081d06830af80c3c3f1f5be1b1 https://www.encodeproject.org/files/ENCFF805NNL/@@download/ENCFF805NNL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF772TIS bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 36 ENCFF643CGH, ENCFF917UJR 798571846 ENCODE Processing Pipeline 68a052ceee75d699134e18bf5c2834e9 https://www.encodeproject.org/files/ENCFF772TIS/@@download/ENCFF772TIS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF301XEB bam unfiltered alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 36 ENCFF643CGH, ENCFF917UJR 1237054921 ENCODE Processing Pipeline ed6ec890f3824ea21b9af137072add77 https://www.encodeproject.org/files/ENCFF301XEB/@@download/ENCFF301XEB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF796NNU bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 36 ENCFF458VHP, ENCFF643CGH 702789134 ENCODE Processing Pipeline 7b3de3f2f16c2233ba3f486f1aa27e7f https://www.encodeproject.org/files/ENCFF796NNU/@@download/ENCFF796NNU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF653HGQ bigWig signal p-value ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF645CCA, ENCFF772TIS, ENCFF943MYJ 1121290661 ENCODE Processing Pipeline 6e94935dee7840db5b60823403648663 https://www.encodeproject.org/files/ENCFF653HGQ/@@download/ENCFF653HGQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF603UBX bigWig fold change over control ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF645CCA, ENCFF772TIS, ENCFF943MYJ 1031722069 ENCODE Processing Pipeline fb1bc46bbe7f22c38bccc6041c06382d https://www.encodeproject.org/files/ENCFF603UBX/@@download/ENCFF603UBX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF272ACM bigWig signal p-value ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF645CCA, ENCFF796NNU, ENCFF943MYJ 1049469317 ENCODE Processing Pipeline d3e8b6f4f7bebbc56475a7c4a439b63a https://www.encodeproject.org/files/ENCFF272ACM/@@download/ENCFF272ACM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF601PYD bigWig signal p-value ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF645CCA, ENCFF772TIS, ENCFF796NNU, ENCFF943MYJ 1312440588 ENCODE Processing Pipeline e4d3f9bc252631c316ff1371633f5e4d https://www.encodeproject.org/files/ENCFF601PYD/@@download/ENCFF601PYD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF276VVU bigWig fold change over control ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF645CCA, ENCFF796NNU, ENCFF943MYJ 960450290 ENCODE Processing Pipeline 951d4ef06fae4ce27b811a1306634ccf https://www.encodeproject.org/files/ENCFF276VVU/@@download/ENCFF276VVU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF214PES bigWig fold change over control ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF645CCA, ENCFF772TIS, ENCFF796NNU, ENCFF943MYJ 1408852106 ENCODE Processing Pipeline 3818cd80e1d6e8fe8bffb04e66db3cd9 https://www.encodeproject.org/files/ENCFF214PES/@@download/ENCFF214PES.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF741PZY bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF645CCA, ENCFF772TIS, ENCFF943MYJ 6696140 ENCODE Processing Pipeline 85c906127ca2b2a24a677f733ab42ed7 https://www.encodeproject.org/files/ENCFF741PZY/@@download/ENCFF741PZY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF808BOS bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF645CCA, ENCFF796NNU, ENCFF943MYJ 6486258 ENCODE Processing Pipeline 3bdbc692ad14e7d83ab2399f9cacdf32 https://www.encodeproject.org/files/ENCFF808BOS/@@download/ENCFF808BOS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF594UAB bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF645CCA, ENCFF772TIS, ENCFF796NNU, ENCFF943MYJ 7034005 ENCODE Processing Pipeline 00defca9e0cfb47f71bec70424fc1c6b https://www.encodeproject.org/files/ENCFF594UAB/@@download/ENCFF594UAB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF218MHP bigBed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF741PZY 13298187 ENCODE Processing Pipeline 5ac1772da786f4883ce50d4ae196c001 https://www.encodeproject.org/files/ENCFF218MHP/@@download/ENCFF218MHP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF178COJ bigBed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF808BOS 13457956 ENCODE Processing Pipeline 2de1acf993b86d867b3a6beeaf76f87c https://www.encodeproject.org/files/ENCFF178COJ/@@download/ENCFF178COJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF761NUG bigBed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF594UAB 13243900 ENCODE Processing Pipeline 35d78583474fc34efb75bb9eb1e517e2 https://www.encodeproject.org/files/ENCFF761NUG/@@download/ENCFF761NUG.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF746PIJ bed narrowPeak conservative idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF594UAB, ENCFF741PZY, ENCFF808BOS 265217 ENCODE Processing Pipeline b318f695f0cbd08aebb28390cc077df7 https://www.encodeproject.org/files/ENCFF746PIJ/@@download/ENCFF746PIJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF879BJZ bigBed narrowPeak conservative idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF746PIJ 586530 ENCODE Processing Pipeline 765ffe0c6f35ed2fe995ec63936f6af7 https://www.encodeproject.org/files/ENCFF879BJZ/@@download/ENCFF879BJZ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF616RSZ bed narrowPeak optimal idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF594UAB, ENCFF741PZY, ENCFF808BOS 419521 ENCODE Processing Pipeline 2fa5152b49700d3331050d974eb2103b https://www.encodeproject.org/files/ENCFF616RSZ/@@download/ENCFF616RSZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF336BKP bigBed narrowPeak optimal idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF616RSZ 822718 ENCODE Processing Pipeline c0132e3c1c4fb03fb01b395a0ee5b7b0 https://www.encodeproject.org/files/ENCFF336BKP/@@download/ENCFF336BKP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF583GKV fastq reads ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 1 25 paired-ended 2 ENCFF917UJR 709697908 Bradley Bernstein, Broad 381f7c8e14527db32b20cc0c1c91e600 https://www.encodeproject.org/files/ENCFF583GKV/@@download/ENCFF583GKV.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF917UJR fastq reads ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 1 36 paired-ended 1 ENCFF583GKV 901502426 Bradley Bernstein, Broad fa05927c9c30d1c229323483b030e25e https://www.encodeproject.org/files/ENCFF917UJR/@@download/ENCFF917UJR.fastq.gz Illumina HiSeq 2500 /files/ENCFF066LYG/, /files/ENCFF162ADN/, /files/ENCFF474ZPM/, /files/ENCFF642ZJC/ released borderline replicate concordance, low read length, inconsistent control run_type, low read depth, inconsistent control read length, antibody characterized with exemption mismatched status, experiment not submitted to GEO ENCFF458VHP fastq reads ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 1 36 paired-ended 1 ENCFF895JLD 745915936 Bradley Bernstein, Broad 91834b6907f45ffa32f6c04fdd64d8ea https://www.encodeproject.org/files/ENCFF458VHP/@@download/ENCFF458VHP.fastq.gz Illumina HiSeq 2500 /files/ENCFF356QYZ/, /files/ENCFF369RYY/, /files/ENCFF608CWZ/, /files/ENCFF653JWL/, /files/ENCFF854ELY/, /files/ENCFF881CNC/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption, inconsistent control run_type mismatched status, experiment not submitted to GEO ENCFF895JLD fastq reads ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 1 25 paired-ended 2 ENCFF458VHP 587060687 Bradley Bernstein, Broad 97be02b3acd1372e5ccade11d3ac71ce https://www.encodeproject.org/files/ENCFF895JLD/@@download/ENCFF895JLD.fastq.gz Illumina HiSeq 2500 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO missing controlled_by ENCFF577QMV bam unfiltered alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 36 ENCFF458VHP, ENCFF807MUK 1060036180 ENCODE Processing Pipeline fe2adbe474cd0a95a2c36814af722bae https://www.encodeproject.org/files/ENCFF577QMV/@@download/ENCFF577QMV.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF809XFC bam unfiltered alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 36 ENCFF807MUK, ENCFF917UJR 1229996550 ENCODE Processing Pipeline 7777f8cb49dee814798fb58189fac9d7 https://www.encodeproject.org/files/ENCFF809XFC/@@download/ENCFF809XFC.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF707EHW bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 36 ENCFF458VHP, ENCFF807MUK 703147728 ENCODE Processing Pipeline 9596037bb7e04ef32cc31b12d3a60c89 https://www.encodeproject.org/files/ENCFF707EHW/@@download/ENCFF707EHW.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF832OJP bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 36 ENCFF807MUK, ENCFF917UJR 798988230 ENCODE Processing Pipeline 3a303a892c712511796c31d62be10c41 https://www.encodeproject.org/files/ENCFF832OJP/@@download/ENCFF832OJP.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF730GEK bigWig signal p-value ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF832OJP 1170183699 ENCODE Processing Pipeline 226fe2b60215c9250dc30246286980f0 https://www.encodeproject.org/files/ENCFF730GEK/@@download/ENCFF730GEK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF843WMU bigWig fold change over control ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF832OJP 1028295975 ENCODE Processing Pipeline 42a1c5faa2d5b76c8d0a9c5d4d6a3cf0 https://www.encodeproject.org/files/ENCFF843WMU/@@download/ENCFF843WMU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF835BHM bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF832OJP 6687654 ENCODE Processing Pipeline 3b3a04909c254073b8162ce6dd71f334 https://www.encodeproject.org/files/ENCFF835BHM/@@download/ENCFF835BHM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF060TMU bigWig signal p-value ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW, ENCFF832OJP 1389861159 ENCODE Processing Pipeline 7e2635c4bdb13a70797dc48e774d470b https://www.encodeproject.org/files/ENCFF060TMU/@@download/ENCFF060TMU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF157NII bigWig fold change over control ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW, ENCFF832OJP 1408438655 ENCODE Processing Pipeline 2eeb6d3461fe8e78fbbab864407d7728 https://www.encodeproject.org/files/ENCFF157NII/@@download/ENCFF157NII.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF418EHB bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW 6464491 ENCODE Processing Pipeline b7e9f49e4efa0123691e1b5547bc0468 https://www.encodeproject.org/files/ENCFF418EHB/@@download/ENCFF418EHB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF865EDO bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW, ENCFF832OJP 7033255 ENCODE Processing Pipeline b0ab455e098be0d4bc9ec43fe30568eb https://www.encodeproject.org/files/ENCFF865EDO/@@download/ENCFF865EDO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF481HWU bigBed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF865EDO 13239157 ENCODE Processing Pipeline cae1accfb93224d1ddc5ac9b95913288 https://www.encodeproject.org/files/ENCFF481HWU/@@download/ENCFF481HWU.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF246TVT bigWig fold change over control ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW 958347190 ENCODE Processing Pipeline 532f5d4ff8ef080733f33990dec9cd04 https://www.encodeproject.org/files/ENCFF246TVT/@@download/ENCFF246TVT.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF874TMI bigBed narrowPeak conservative idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF193YSE 585328 ENCODE Processing Pipeline 72ce53858edc7e2676ad8d699a3ef3af https://www.encodeproject.org/files/ENCFF874TMI/@@download/ENCFF874TMI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF033BDT bed narrowPeak optimal idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF001TDO, ENCFF418EHB, ENCFF835BHM, ENCFF865EDO 425988 ENCODE Processing Pipeline adb45f94576c907fd380d8a5a4defd4a https://www.encodeproject.org/files/ENCFF033BDT/@@download/ENCFF033BDT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF189FCS bigBed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF835BHM 13281950 ENCODE Processing Pipeline 9dc7a0407f5d96ca93179f36d04b8a7a https://www.encodeproject.org/files/ENCFF189FCS/@@download/ENCFF189FCS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF440BYZ bigBed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF418EHB 13430068 ENCODE Processing Pipeline a33e5dcadd229a8760e986ce21014dcc https://www.encodeproject.org/files/ENCFF440BYZ/@@download/ENCFF440BYZ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF845MLV bigWig signal p-value ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW 1131566712 ENCODE Processing Pipeline 3c9c328cde4f9f52967b1039d9fe0b5b https://www.encodeproject.org/files/ENCFF845MLV/@@download/ENCFF845MLV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF193YSE bed narrowPeak conservative idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF001TDO, ENCFF418EHB, ENCFF835BHM, ENCFF865EDO 264832 ENCODE Processing Pipeline 34950b380dc6e2bbfdc82aa45be5bcc0 https://www.encodeproject.org/files/ENCFF193YSE/@@download/ENCFF193YSE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF754GAA bigBed narrowPeak optimal idr thresholded peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1, 2 ENCFF033BDT 831961 ENCODE Processing Pipeline 71d4d018ba44c5c4967b30b496545387 https://www.encodeproject.org/files/ENCFF754GAA/@@download/ENCFF754GAA.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF909UDE fastq reads ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF447WRG 2525499813 Michael Snyder, Stanford c8cee3f1f1ae9c24c1e1b39ee3329ca0 SRA:SRR5112071 https://www.encodeproject.org/files/ENCFF909UDE/@@download/ENCFF909UDE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF936RHD fastq reads ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF407FUY 2402150905 Michael Snyder, Stanford 92dd20857adc4798a886dd5ae203f6fb SRA:SRR5112070 https://www.encodeproject.org/files/ENCFF936RHD/@@download/ENCFF936RHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF447WRG fastq reads ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF909UDE 2579978322 Michael Snyder, Stanford a565d391e31e86f5f2693b45639b480e SRA:SRR5112071 https://www.encodeproject.org/files/ENCFF447WRG/@@download/ENCFF447WRG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF407FUY fastq reads ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF936RHD 2450959322 Michael Snyder, Stanford 4b1df5c74fc506d667972905f8700a5d SRA:SRR5112070 https://www.encodeproject.org/files/ENCFF407FUY/@@download/ENCFF407FUY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF331MXB bam unfiltered alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF407FUY, ENCFF807MUK, ENCFF936RHD 5344847189 ENCODE Processing Pipeline 212f9f03e06213b58d77f2139bf37e0b https://www.encodeproject.org/files/ENCFF331MXB/@@download/ENCFF331MXB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF685JCR bam unfiltered alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF407FUY, ENCFF643CGH, ENCFF936RHD 5349236543 ENCODE Processing Pipeline 25f6bc09fa05c43ca26c4dd86361d4a7 https://www.encodeproject.org/files/ENCFF685JCR/@@download/ENCFF685JCR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF987VVH bam unfiltered alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF447WRG, ENCFF643CGH, ENCFF909UDE 5613549020 ENCODE Processing Pipeline 736692cfaae534d61f690a347f7f946f https://www.encodeproject.org/files/ENCFF987VVH/@@download/ENCFF987VVH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF366UVQ bam unfiltered alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF447WRG, ENCFF807MUK, ENCFF909UDE 5608796643 ENCODE Processing Pipeline 8bf56c7498cc25c87b9b44a0762e7c0e https://www.encodeproject.org/files/ENCFF366UVQ/@@download/ENCFF366UVQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF519ODA bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF407FUY, ENCFF807MUK, ENCFF936RHD 4584887323 ENCODE Processing Pipeline 881aa6c005ba2eb15ab8a02c2de6064b https://www.encodeproject.org/files/ENCFF519ODA/@@download/ENCFF519ODA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF342NOF bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF407FUY, ENCFF643CGH, ENCFF936RHD 4586094941 ENCODE Processing Pipeline 3f46eb594f954e4a89a234499bbc9862 https://www.encodeproject.org/files/ENCFF342NOF/@@download/ENCFF342NOF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF521XIN bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF447WRG, ENCFF643CGH, ENCFF909UDE 4780204390 ENCODE Processing Pipeline eebafe71d0bce5e7003462851f4a459c https://www.encodeproject.org/files/ENCFF521XIN/@@download/ENCFF521XIN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF916SIK bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF447WRG, ENCFF807MUK, ENCFF909UDE 4778758234 ENCODE Processing Pipeline 65c6e7938349812d8bc8a8cb6f469cc5 https://www.encodeproject.org/files/ENCFF916SIK/@@download/ENCFF916SIK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF346IRL bigWig signal p-value ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF916SIK 1487968188 ENCODE Processing Pipeline 427dd11e1f49fa8fb1a8204de9712c67 https://www.encodeproject.org/files/ENCFF346IRL/@@download/ENCFF346IRL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF595MTT bigWig signal p-value ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF519ODA 1240712527 ENCODE Processing Pipeline 978f30f4f8fc8ef5126ddaf0f470da90 https://www.encodeproject.org/files/ENCFF595MTT/@@download/ENCFF595MTT.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF125OFB bigWig signal p-value ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519ODA, ENCFF916SIK 1428611535 ENCODE Processing Pipeline 79a413cc79be9ef012a8f25f870aa117 https://www.encodeproject.org/files/ENCFF125OFB/@@download/ENCFF125OFB.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF096MFZ bigWig fold change over control ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF916SIK 1434545760 ENCODE Processing Pipeline b4745a8dfcc12ed94abb7b60816baa7f https://www.encodeproject.org/files/ENCFF096MFZ/@@download/ENCFF096MFZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF520BXF bigWig fold change over control ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF519ODA 1376312791 ENCODE Processing Pipeline 876c99cb024bb5df590b7208fab680bf https://www.encodeproject.org/files/ENCFF520BXF/@@download/ENCFF520BXF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF457KBP bigWig fold change over control ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519ODA, ENCFF916SIK 1945908967 ENCODE Processing Pipeline b33a6d6c2d50975aa50833c00fdad108 https://www.encodeproject.org/files/ENCFF457KBP/@@download/ENCFF457KBP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF609TCH bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF916SIK 6933902 ENCODE Processing Pipeline 83e7ce3af1886a00f09636fa2d9c59af https://www.encodeproject.org/files/ENCFF609TCH/@@download/ENCFF609TCH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF731DSK bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF519ODA 6883135 ENCODE Processing Pipeline 2335b9aac0f3e7b94978f59c14e80b60 https://www.encodeproject.org/files/ENCFF731DSK/@@download/ENCFF731DSK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF408KGT bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF519ODA, ENCFF916SIK 7237002 ENCODE Processing Pipeline 5d78dcf8bfd638022701b1901eafe43b https://www.encodeproject.org/files/ENCFF408KGT/@@download/ENCFF408KGT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF624JYA bigBed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF609TCH 13366689 ENCODE Processing Pipeline 184b7727c6e14d3f2bcbebb81cd9968d https://www.encodeproject.org/files/ENCFF624JYA/@@download/ENCFF624JYA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF524RSA bigBed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF731DSK 13385396 ENCODE Processing Pipeline 7ce69aac68486130ad2760577d6755b2 https://www.encodeproject.org/files/ENCFF524RSA/@@download/ENCFF524RSA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF539RHQ bigBed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF408KGT 13197813 ENCODE Processing Pipeline a7918fc48934cce04181a2d4543e69b0 https://www.encodeproject.org/files/ENCFF539RHQ/@@download/ENCFF539RHQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF335HUL bed narrowPeak conservative idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF408KGT, ENCFF609TCH, ENCFF731DSK 259576 ENCODE Processing Pipeline 3b15b2a80fa529eddd1dffae3c8f5046 https://www.encodeproject.org/files/ENCFF335HUL/@@download/ENCFF335HUL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF817CNL bigBed narrowPeak conservative idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF335HUL 562885 ENCODE Processing Pipeline ea9921e73f73671f7ebaf92cd93037bd https://www.encodeproject.org/files/ENCFF817CNL/@@download/ENCFF817CNL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF834YMY bed narrowPeak optimal idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF408KGT, ENCFF609TCH, ENCFF731DSK 312120 ENCODE Processing Pipeline ba9e037cc3c923f73acb0b7e1c7646ed https://www.encodeproject.org/files/ENCFF834YMY/@@download/ENCFF834YMY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF207DJW bigBed narrowPeak optimal idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF834YMY 651585 ENCODE Processing Pipeline af03f49d6c143d8330afec94905d67f5 https://www.encodeproject.org/files/ENCFF207DJW/@@download/ENCFF207DJW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF182FOS bigWig signal p-value ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF521XIN 1372480544 ENCODE Processing Pipeline 9777d12c2dd464a47058376f305772db https://www.encodeproject.org/files/ENCFF182FOS/@@download/ENCFF182FOS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF015JDX bigWig signal p-value ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF342NOF 1449934753 ENCODE Processing Pipeline 303326f3b1bea843744578f8ce1c0058 https://www.encodeproject.org/files/ENCFF015JDX/@@download/ENCFF015JDX.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF819OJP bigWig signal p-value ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF342NOF, ENCFF521XIN 1642137004 ENCODE Processing Pipeline 0e024dc654361397c33a39613117d1ab https://www.encodeproject.org/files/ENCFF819OJP/@@download/ENCFF819OJP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF428XRU bigWig fold change over control ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF521XIN 1432813700 ENCODE Processing Pipeline da811aacb23dd4b62211b9dbbb78feb0 https://www.encodeproject.org/files/ENCFF428XRU/@@download/ENCFF428XRU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF506HEM bigWig fold change over control ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF342NOF 1400754656 ENCODE Processing Pipeline 6759b0933c94903cdc72560364bb216f https://www.encodeproject.org/files/ENCFF506HEM/@@download/ENCFF506HEM.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF124EMM bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF342NOF, ENCFF521XIN 7199963 ENCODE Processing Pipeline 42968c1a3faab2d89ab0bd567eaf40bb https://www.encodeproject.org/files/ENCFF124EMM/@@download/ENCFF124EMM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF615IIR bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF342NOF 6785323 ENCODE Processing Pipeline fea5ed543925fb4bc465247930cd9d64 https://www.encodeproject.org/files/ENCFF615IIR/@@download/ENCFF615IIR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF554CJS bigWig fold change over control ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF342NOF, ENCFF521XIN 1998885111 ENCODE Processing Pipeline 2ff1f783e7443b69991a207a9a27cb56 https://www.encodeproject.org/files/ENCFF554CJS/@@download/ENCFF554CJS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF026RCR bigBed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF124EMM 13193661 ENCODE Processing Pipeline 9df7dab3060af0110fb99fa30d5e95f7 https://www.encodeproject.org/files/ENCFF026RCR/@@download/ENCFF026RCR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF441CIC bigBed narrowPeak conservative idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF910ZEV 553632 ENCODE Processing Pipeline 1de55c3677f81edd9fddc342810213f4 https://www.encodeproject.org/files/ENCFF441CIC/@@download/ENCFF441CIC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF471IQM bigBed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF615IIR 13386414 ENCODE Processing Pipeline 29e4c9e67748633e7ddc6ba5456fa842 https://www.encodeproject.org/files/ENCFF471IQM/@@download/ENCFF471IQM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF910ZEV bed narrowPeak conservative idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF124EMM, ENCFF147ESS, ENCFF419RSJ, ENCFF615IIR 252617 ENCODE Processing Pipeline d7cd4efb0e5f259a21c50ed2ed560945 https://www.encodeproject.org/files/ENCFF910ZEV/@@download/ENCFF910ZEV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF478TZD bigBed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF147ESS 13381123 ENCODE Processing Pipeline ed4f26bee4a9ac7c76b7e8b7a1d51399 https://www.encodeproject.org/files/ENCFF478TZD/@@download/ENCFF478TZD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF147ESS bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF521XIN 6857583 ENCODE Processing Pipeline 5839a3308b45ee501a20de814460bf8a https://www.encodeproject.org/files/ENCFF147ESS/@@download/ENCFF147ESS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF902ZKV bed narrowPeak optimal idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF124EMM, ENCFF147ESS, ENCFF419RSJ, ENCFF615IIR 299639 ENCODE Processing Pipeline fb74ee7d4d1b65fd9cbd78e9ad7161e7 https://www.encodeproject.org/files/ENCFF902ZKV/@@download/ENCFF902ZKV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF163UAH bigBed narrowPeak optimal idr thresholded peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF902ZKV 634192 ENCODE Processing Pipeline 104d3b377ec77265650d5907941e6c52 https://www.encodeproject.org/files/ENCFF163UAH/@@download/ENCFF163UAH.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF777MWD bam unfiltered alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF712JVW, ENCFF807MUK 1702060268 ENCODE Processing Pipeline b9211a99ad0b00da815f19eb4f966256 https://www.encodeproject.org/files/ENCFF777MWD/@@download/ENCFF777MWD.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF768IBR bam unfiltered alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF807MUK 1893933894 ENCODE Processing Pipeline 524b59c662a3d512cc4ffc7a1c8ed84e https://www.encodeproject.org/files/ENCFF768IBR/@@download/ENCFF768IBR.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF641GTE bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF712JVW, ENCFF807MUK 1256730872 ENCODE Processing Pipeline a4635287a94d67c055ac920292ab7522 https://www.encodeproject.org/files/ENCFF641GTE/@@download/ENCFF641GTE.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF361MQC bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF807MUK 1417944994 ENCODE Processing Pipeline dc16a25569d233535d3cd2826a7eee90 https://www.encodeproject.org/files/ENCFF361MQC/@@download/ENCFF361MQC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF758EEK bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 982891721 ENCODE Processing Pipeline 6611b9f9734b6ec1d4fa4d9b38b4ba32 https://www.encodeproject.org/files/ENCFF758EEK/@@download/ENCFF758EEK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF534TTR bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 940998375 ENCODE Processing Pipeline 9664e31e93bb2333bcd87378dcd9eea0 https://www.encodeproject.org/files/ENCFF534TTR/@@download/ENCFF534TTR.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF153SZA bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF361MQC, ENCFF654EHF, ENCFF991UTU 1074872468 ENCODE Processing Pipeline e4e3eef33a911d354cc589e2bae86264 https://www.encodeproject.org/files/ENCFF153SZA/@@download/ENCFF153SZA.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF490GWN bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF361MQC, ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 1309414532 ENCODE Processing Pipeline 1f3e5811e6863920dfecd9a44feb95fa https://www.encodeproject.org/files/ENCFF490GWN/@@download/ENCFF490GWN.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF059NHJ bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF361MQC, ENCFF654EHF, ENCFF991UTU 1036506241 ENCODE Processing Pipeline 3e580511c81bd37aac139fada53aab9c https://www.encodeproject.org/files/ENCFF059NHJ/@@download/ENCFF059NHJ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF922DRV bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF361MQC, ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 1480983607 ENCODE Processing Pipeline 96bf812a90aa9d377ffa25b3fe0adbf9 https://www.encodeproject.org/files/ENCFF922DRV/@@download/ENCFF922DRV.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF671LMY bed narrowPeak conservative idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF001TDO, ENCFF411FEE, ENCFF491JFL, ENCFF615HHV 658456 ENCODE Processing Pipeline 2e9bad3cda126c331b658d20fdf3340f https://www.encodeproject.org/files/ENCFF671LMY/@@download/ENCFF671LMY.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF411FEE bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 6604714 ENCODE Processing Pipeline 9f5421a40002adb4b322146e9a7d749e https://www.encodeproject.org/files/ENCFF411FEE/@@download/ENCFF411FEE.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF131DLW bigBed narrowPeak optimal idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF168INE 1305061 ENCODE Processing Pipeline 5ec47754a273300bc72a32d36565da47 https://www.encodeproject.org/files/ENCFF131DLW/@@download/ENCFF131DLW.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF491JFL bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF361MQC, ENCFF654EHF, ENCFF991UTU 6653476 ENCODE Processing Pipeline 8cae86c49ce3f5f045310de13afc7dee https://www.encodeproject.org/files/ENCFF491JFL/@@download/ENCFF491JFL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF615HHV bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF361MQC, ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 6996961 ENCODE Processing Pipeline b9f11a3c73187c8119ee7d67e32bb3f3 https://www.encodeproject.org/files/ENCFF615HHV/@@download/ENCFF615HHV.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF093KLK bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF411FEE 13397511 ENCODE Processing Pipeline b72230e21d1f77f0d114b9c717eeef55 https://www.encodeproject.org/files/ENCFF093KLK/@@download/ENCFF093KLK.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF013GGP bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF615HHV 13387822 ENCODE Processing Pipeline ae2b2c3662fe5ca156c1f3ec553defa3 https://www.encodeproject.org/files/ENCFF013GGP/@@download/ENCFF013GGP.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF591YEA bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF491JFL 13451201 ENCODE Processing Pipeline e3e57fe996554df7b815fdfc144a6e43 https://www.encodeproject.org/files/ENCFF591YEA/@@download/ENCFF591YEA.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF168INE bed narrowPeak optimal idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF001TDO, ENCFF411FEE, ENCFF491JFL, ENCFF615HHV 690741 ENCODE Processing Pipeline 75a88e99090b799ce8034d216030b7e7 https://www.encodeproject.org/files/ENCFF168INE/@@download/ENCFF168INE.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF640SAR bigBed narrowPeak conservative idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF671LMY 1255081 ENCODE Processing Pipeline 8daedfea1d0003df5f383b11cb4d1b88 https://www.encodeproject.org/files/ENCFF640SAR/@@download/ENCFF640SAR.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF712JVW fastq reads ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 1 50 single-ended 1528439528 Richard Myers, HAIB 9a3dcfbae96633d9175475232070e6ec SRA:SRR5331363 https://www.encodeproject.org/files/ENCFF712JVW/@@download/ENCFF712JVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released antibody characterized with exemption biological replicates with identical biosample ENCFF407SOA fastq reads ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 1 50 single-ended 1719236462 Richard Myers, HAIB 64d4133ef12e67d4a3fd6d71bf2ec849 SRA:SRR5331362 https://www.encodeproject.org/files/ENCFF407SOA/@@download/ENCFF407SOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released antibody characterized with exemption biological replicates with identical biosample ENCFF554EXS bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF807MUK 1417944965 ENCODE Processing Pipeline 140bfe3b46541ca3528c47addfb26869 https://www.encodeproject.org/files/ENCFF554EXS/@@download/ENCFF554EXS.bam hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF988MKR bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF712JVW, ENCFF807MUK 1256730844 ENCODE Processing Pipeline e48a2bd831e6bb4b0834f112590f805b https://www.encodeproject.org/files/ENCFF988MKR/@@download/ENCFF988MKR.bam hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF373GQR bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 991371951 ENCODE Processing Pipeline 42dc74f81526944477efe5dbc0619ecc https://www.encodeproject.org/files/ENCFF373GQR/@@download/ENCFF373GQR.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF803IWJ bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF554EXS, ENCFF654EHF, ENCFF991UTU 1090698509 ENCODE Processing Pipeline 1544129cce68fe8fabe16b83bf1e29fa https://www.encodeproject.org/files/ENCFF803IWJ/@@download/ENCFF803IWJ.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF532ZXY bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF554EXS, ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 1295925423 ENCODE Processing Pipeline e3c3e627e6c363949d30c2e590d79c9e https://www.encodeproject.org/files/ENCFF532ZXY/@@download/ENCFF532ZXY.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF589FSL bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 956037212 ENCODE Processing Pipeline 4f086a865186fc96c80bf9377bc19202 https://www.encodeproject.org/files/ENCFF589FSL/@@download/ENCFF589FSL.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF713KQJ bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF554EXS, ENCFF654EHF, ENCFF991UTU 1057145872 ENCODE Processing Pipeline d447c02f894ca69cce95264dced9ceb1 https://www.encodeproject.org/files/ENCFF713KQJ/@@download/ENCFF713KQJ.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF290SKO bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF554EXS, ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 1447870627 ENCODE Processing Pipeline b09ff62d5d3a645ab1d6fcf744addea9 https://www.encodeproject.org/files/ENCFF290SKO/@@download/ENCFF290SKO.bigWig hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF703VGN bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF554EXS, ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 7061543 ENCODE Processing Pipeline 324fb15d8aa687b77cf1688b01662497 https://www.encodeproject.org/files/ENCFF703VGN/@@download/ENCFF703VGN.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF775EEP bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF414TMK 13402188 ENCODE Processing Pipeline 0c1d37bb78ab96d07ce098b69b8dc7a7 https://www.encodeproject.org/files/ENCFF775EEP/@@download/ENCFF775EEP.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF414TMK bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 6738216 ENCODE Processing Pipeline f0927c488d28f7e28dfe87553ea3db22 https://www.encodeproject.org/files/ENCFF414TMK/@@download/ENCFF414TMK.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF517GNM bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF554EXS, ENCFF654EHF, ENCFF991UTU 6782982 ENCODE Processing Pipeline 19b75432199988920527c7bf357bc5aa https://www.encodeproject.org/files/ENCFF517GNM/@@download/ENCFF517GNM.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF258ZBJ bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF703VGN 13388944 ENCODE Processing Pipeline 94aeaa7a828608920e159992642b9691 https://www.encodeproject.org/files/ENCFF258ZBJ/@@download/ENCFF258ZBJ.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF035UQQ bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF517GNM 13454978 ENCODE Processing Pipeline 9f96203e041d9f18d86ffaf0929b6752 https://www.encodeproject.org/files/ENCFF035UQQ/@@download/ENCFF035UQQ.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF160AUQ bam unfiltered alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF643CGH, ENCFF712JVW 1710441937 ENCODE Processing Pipeline eb9cb78e8bd94ed2e3d04e05d12bdeb6 https://www.encodeproject.org/files/ENCFF160AUQ/@@download/ENCFF160AUQ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF756TFV bam unfiltered alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF643CGH 1903659231 ENCODE Processing Pipeline 0a53befc3c5b07a62771cca0d6974aab https://www.encodeproject.org/files/ENCFF756TFV/@@download/ENCFF756TFV.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF866YKI bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF643CGH, ENCFF712JVW 1256771969 ENCODE Processing Pipeline c10c75287d44ab6928acb73a02e54df0 https://www.encodeproject.org/files/ENCFF866YKI/@@download/ENCFF866YKI.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF263YXM bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF643CGH 1418118129 ENCODE Processing Pipeline 55b3b2e528149af0922c86aed0d3a8ba https://www.encodeproject.org/files/ENCFF263YXM/@@download/ENCFF263YXM.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF232ZMW bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF370PSF, ENCFF866YKI, ENCFF995OIG 1116014468 ENCODE Processing Pipeline 17199b78bd76ed0cf84c81cd4d201106 https://www.encodeproject.org/files/ENCFF232ZMW/@@download/ENCFF232ZMW.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF506ZDB bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF263YXM, ENCFF370PSF, ENCFF995OIG 1114561548 ENCODE Processing Pipeline f32d626c6658b80d430900863d2ceca1 https://www.encodeproject.org/files/ENCFF506ZDB/@@download/ENCFF506ZDB.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF506OKQ bigWig signal p-value ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF263YXM, ENCFF370PSF, ENCFF866YKI, ENCFF995OIG 1469928574 ENCODE Processing Pipeline 32f543b67634a0686e3e564c188b6669 https://www.encodeproject.org/files/ENCFF506OKQ/@@download/ENCFF506OKQ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF727KCL bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF370PSF, ENCFF866YKI, ENCFF995OIG 951242905 ENCODE Processing Pipeline ebeae0b5a933cd4f70f7f95603f4028a https://www.encodeproject.org/files/ENCFF727KCL/@@download/ENCFF727KCL.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF169NMJ bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF263YXM, ENCFF370PSF, ENCFF995OIG 1060463022 ENCODE Processing Pipeline f7f41585b1a5dcbbd7da16efec6421e3 https://www.encodeproject.org/files/ENCFF169NMJ/@@download/ENCFF169NMJ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF869EBO bigWig fold change over control ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF263YXM, ENCFF370PSF, ENCFF866YKI, ENCFF995OIG 1466268821 ENCODE Processing Pipeline 0d37063acbfac61f60e6a66a7b98c508 https://www.encodeproject.org/files/ENCFF869EBO/@@download/ENCFF869EBO.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF537AKU bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF154XEH 13451088 ENCODE Processing Pipeline 23b07b6fa45f79a661a0915280b299a3 https://www.encodeproject.org/files/ENCFF537AKU/@@download/ENCFF537AKU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF562CAY bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF172QSW 13343459 ENCODE Processing Pipeline e12af6f06e61b2972d175e652f17610c https://www.encodeproject.org/files/ENCFF562CAY/@@download/ENCFF562CAY.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF154XEH bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF263YXM, ENCFF370PSF, ENCFF866YKI, ENCFF995OIG 7044187 ENCODE Processing Pipeline 427425b5777e3d43ba05165f1a1f778a https://www.encodeproject.org/files/ENCFF154XEH/@@download/ENCFF154XEH.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF085YHB bigBed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF461OKL 13459392 ENCODE Processing Pipeline 3e84bb99c228c305ec572d5f2a55973e https://www.encodeproject.org/files/ENCFF085YHB/@@download/ENCFF085YHB.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF584ZYB bigBed narrowPeak conservative idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF643EJZ 1280785 ENCODE Processing Pipeline dd8eec5bd607f267cee327b4af76d944 https://www.encodeproject.org/files/ENCFF584ZYB/@@download/ENCFF584ZYB.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF172QSW bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF370PSF, ENCFF866YKI, ENCFF995OIG 6551975 ENCODE Processing Pipeline d96e4db4d9c2a2ae38e6088c450ed375 https://www.encodeproject.org/files/ENCFF172QSW/@@download/ENCFF172QSW.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF461OKL bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF263YXM, ENCFF370PSF, ENCFF995OIG 6651654 ENCODE Processing Pipeline 77258aafb182476b999ba541c03da403 https://www.encodeproject.org/files/ENCFF461OKL/@@download/ENCFF461OKL.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF819WNB bed narrowPeak optimal idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF154XEH, ENCFF172QSW, ENCFF419RSJ, ENCFF461OKL 694091 ENCODE Processing Pipeline f507ceca296b28982d5c3bfe37a4b1b8 https://www.encodeproject.org/files/ENCFF819WNB/@@download/ENCFF819WNB.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF643EJZ bed narrowPeak conservative idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF154XEH, ENCFF172QSW, ENCFF419RSJ, ENCFF461OKL 675047 ENCODE Processing Pipeline b5f0461600f98ef0c3c7be89b271a71b https://www.encodeproject.org/files/ENCFF643EJZ/@@download/ENCFF643EJZ.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF925XCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF819WNB 1311940 ENCODE Processing Pipeline 49b295a86d368c9ccf31414e5cab3656 https://www.encodeproject.org/files/ENCFF925XCZ/@@download/ENCFF925XCZ.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF422THA bigBed narrowPeak conservative idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF486IPS 1158867 ENCODE Processing Pipeline debd399d8648c00ed7baad297627ec6a https://www.encodeproject.org/files/ENCFF422THA/@@download/ENCFF422THA.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF043HEN bed narrowPeak optimal idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF001TDO, ENCFF414TMK, ENCFF517GNM, ENCFF703VGN 611435 ENCODE Processing Pipeline 0fd15e7d5d5cb7811e831ffc2fd6b812 https://www.encodeproject.org/files/ENCFF043HEN/@@download/ENCFF043HEN.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF486IPS bed narrowPeak conservative idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF001TDO, ENCFF414TMK, ENCFF517GNM, ENCFF703VGN 594335 ENCODE Processing Pipeline 495518567a4b9717cd7456d3f4b7f16c https://www.encodeproject.org/files/ENCFF486IPS/@@download/ENCFF486IPS.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF931HRK bigBed narrowPeak optimal idr thresholded peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1, 2 ENCFF043HEN 1184296 ENCODE Processing Pipeline ec3f82d16858c3fa0619afbbd926bb65 https://www.encodeproject.org/files/ENCFF931HRK/@@download/ENCFF931HRK.bigBed hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF281EIK fastq reads ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1830816994 Richard Myers, HAIB a0bba3596cb1f01c19a60f39b810ecff SRA:SRR5331221 https://www.encodeproject.org/files/ENCFF281EIK/@@download/ENCFF281EIK.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, antibody characterized with exemption ENCFF183QKB fastq reads ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1266098192 Richard Myers, HAIB 328fef045a5fb348b2404f71b276443f SRA:SRR5331220 https://www.encodeproject.org/files/ENCFF183QKB/@@download/ENCFF183QKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released low read depth, antibody characterized with exemption ENCFF146TUI bam unfiltered alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF281EIK, ENCFF807MUK 1901604022 ENCODE Processing Pipeline abced924799343ff1164a7bad5c0b64a https://www.encodeproject.org/files/ENCFF146TUI/@@download/ENCFF146TUI.bam hg19 released low read depth, antibody characterized with exemption ENCFF147ZCC bam unfiltered alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF183QKB, ENCFF807MUK 1329356935 ENCODE Processing Pipeline 29ec9c62f41f16085fc56bfd7ac039a2 https://www.encodeproject.org/files/ENCFF147ZCC/@@download/ENCFF147ZCC.bam hg19 released low read depth, antibody characterized with exemption ENCFF578BYK bam unfiltered alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF281EIK, ENCFF643CGH 1904971605 ENCODE Processing Pipeline e45c1df92ad7e1f3d903ded9de7f0e4f https://www.encodeproject.org/files/ENCFF578BYK/@@download/ENCFF578BYK.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF358BPA bam unfiltered alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF183QKB, ENCFF643CGH 1331506326 ENCODE Processing Pipeline c7c11a07ff46a605bfcc42f62e99f6eb https://www.encodeproject.org/files/ENCFF358BPA/@@download/ENCFF358BPA.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF115VTJ bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF183QKB, ENCFF807MUK 970730340 ENCODE Processing Pipeline f1128a5d9508a94affb8eee8d33bc7ac https://www.encodeproject.org/files/ENCFF115VTJ/@@download/ENCFF115VTJ.bam hg19 released low read depth, antibody characterized with exemption ENCFF363YKW bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF183QKB, ENCFF643CGH 970248899 ENCODE Processing Pipeline c14853318a55d2b3eb71326faad9076f https://www.encodeproject.org/files/ENCFF363YKW/@@download/ENCFF363YKW.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF131HAH bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF281EIK, ENCFF807MUK 1376328635 ENCODE Processing Pipeline 7be3e1f3ec3d7673c1b8a5a150cf21d8 https://www.encodeproject.org/files/ENCFF131HAH/@@download/ENCFF131HAH.bam hg19 released low read depth, antibody characterized with exemption ENCFF473NMO bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF281EIK, ENCFF643CGH 1375839326 ENCODE Processing Pipeline 89582cb16309704f069e342171333ee9 https://www.encodeproject.org/files/ENCFF473NMO/@@download/ENCFF473NMO.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF247NLO bigWig signal p-value ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF332SVJ, ENCFF473NMO, ENCFF709XAA 984751689 ENCODE Processing Pipeline b57b18489ba985edee6ef679521455b5 https://www.encodeproject.org/files/ENCFF247NLO/@@download/ENCFF247NLO.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF265CJN bigWig signal p-value ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF363YKW, ENCFF709XAA 979793261 ENCODE Processing Pipeline 912ec8e1614fa74f99689337f3c0f588 https://www.encodeproject.org/files/ENCFF265CJN/@@download/ENCFF265CJN.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF626OOO bigWig signal p-value ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF332SVJ, ENCFF363YKW, ENCFF473NMO, ENCFF709XAA 1345516850 ENCODE Processing Pipeline 791388dbb07f0836d8a3e7f50793c9d0 https://www.encodeproject.org/files/ENCFF626OOO/@@download/ENCFF626OOO.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF650VEE bigWig fold change over control ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF332SVJ, ENCFF473NMO, ENCFF709XAA 802579304 ENCODE Processing Pipeline 208c2b63f23741794eb60314298f9af5 https://www.encodeproject.org/files/ENCFF650VEE/@@download/ENCFF650VEE.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF623AMR bigWig fold change over control ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF363YKW, ENCFF709XAA 642703123 ENCODE Processing Pipeline 507c672fc34ce8b99f040c6c8fbe0498 https://www.encodeproject.org/files/ENCFF623AMR/@@download/ENCFF623AMR.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF900REU bigWig fold change over control ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF332SVJ, ENCFF363YKW, ENCFF473NMO, ENCFF709XAA 1098954451 ENCODE Processing Pipeline 93e5728248a3954d5df862e40c26ab93 https://www.encodeproject.org/files/ENCFF900REU/@@download/ENCFF900REU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF294TKX bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF332SVJ, ENCFF473NMO, ENCFF709XAA 6352302 ENCODE Processing Pipeline 851854e5e9bb7bc05487becd854a6b2c https://www.encodeproject.org/files/ENCFF294TKX/@@download/ENCFF294TKX.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF602FXU bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF332SVJ, ENCFF363YKW, ENCFF473NMO, ENCFF709XAA 6784191 ENCODE Processing Pipeline d65fbbf671a3926934d8d08cf7107f5a https://www.encodeproject.org/files/ENCFF602FXU/@@download/ENCFF602FXU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF770PCN bigBed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF675MHT 13207837 ENCODE Processing Pipeline 598e1de8f198050fdad052bd0bf5877a https://www.encodeproject.org/files/ENCFF770PCN/@@download/ENCFF770PCN.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF675MHT bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF332SVJ, ENCFF363YKW, ENCFF709XAA 5863045 ENCODE Processing Pipeline 3f4ef3f530fc925a034c676165edf98c https://www.encodeproject.org/files/ENCFF675MHT/@@download/ENCFF675MHT.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF159OAX bed narrowPeak conservative idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF294TKX, ENCFF419RSJ, ENCFF602FXU, ENCFF675MHT 634458 ENCODE Processing Pipeline 5704bd78e270ce39640de3e4936a4be4 https://www.encodeproject.org/files/ENCFF159OAX/@@download/ENCFF159OAX.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF669JCI bigBed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF294TKX 13536862 ENCODE Processing Pipeline 78db40a2f3561436c7d2ca0777501578 https://www.encodeproject.org/files/ENCFF669JCI/@@download/ENCFF669JCI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF574NOK bigBed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF602FXU 13511408 ENCODE Processing Pipeline 16ea735698646eb2c5ae6a3741c1d712 https://www.encodeproject.org/files/ENCFF574NOK/@@download/ENCFF574NOK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF015DBZ bigBed narrowPeak conservative idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF159OAX 1312121 ENCODE Processing Pipeline 3420e411478ca38436165f2a926e7e2c https://www.encodeproject.org/files/ENCFF015DBZ/@@download/ENCFF015DBZ.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF021XJN bed narrowPeak optimal idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF294TKX, ENCFF419RSJ, ENCFF602FXU, ENCFF675MHT 663445 ENCODE Processing Pipeline 2cc7dab80c84f9a442997a58288842c1 https://www.encodeproject.org/files/ENCFF021XJN/@@download/ENCFF021XJN.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF866FMO bigBed narrowPeak optimal idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF021XJN 1357233 ENCODE Processing Pipeline 91736d7452b7010e1af551b6d80687da https://www.encodeproject.org/files/ENCFF866FMO/@@download/ENCFF866FMO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF186BPW bigWig signal p-value ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF131HAH 1221320833 ENCODE Processing Pipeline f7bb505ae02936ce77c0be886a563f4f https://www.encodeproject.org/files/ENCFF186BPW/@@download/ENCFF186BPW.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF938RHP bigWig signal p-value ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ 980576099 ENCODE Processing Pipeline 3b1375d518a0062082fc527b5e2410e1 https://www.encodeproject.org/files/ENCFF938RHP/@@download/ENCFF938RHP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF208SUL bigWig fold change over control ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ 643260670 ENCODE Processing Pipeline ed0764fa50e4c698fb59aec94bb55545 https://www.encodeproject.org/files/ENCFF208SUL/@@download/ENCFF208SUL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF968CBF bigWig signal p-value ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ, ENCFF131HAH 1304623932 ENCODE Processing Pipeline e8f085e2f09212a4eaa8746a026f1790 https://www.encodeproject.org/files/ENCFF968CBF/@@download/ENCFF968CBF.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF944LXO bigWig fold change over control ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF131HAH 817915990 ENCODE Processing Pipeline 60e00b18e3e0b855a52643559ba716ba https://www.encodeproject.org/files/ENCFF944LXO/@@download/ENCFF944LXO.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF026KYB bigWig fold change over control ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ, ENCFF131HAH 1103679483 ENCODE Processing Pipeline 895764d5734f33a240e61f45c625c358 https://www.encodeproject.org/files/ENCFF026KYB/@@download/ENCFF026KYB.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF045SMN bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF131HAH 6212068 ENCODE Processing Pipeline 4d303f0bcffe18274deecf13520dfd59 https://www.encodeproject.org/files/ENCFF045SMN/@@download/ENCFF045SMN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF535IGN bigBed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF045SMN 13362640 ENCODE Processing Pipeline 7f9da50d68843e0a736cb6c6dd7c8ab8 https://www.encodeproject.org/files/ENCFF535IGN/@@download/ENCFF535IGN.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF917CTE bigBed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF477IXW 13379195 ENCODE Processing Pipeline 436f5f45c4aff8b9959d0fb5da748bce https://www.encodeproject.org/files/ENCFF917CTE/@@download/ENCFF917CTE.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF357OAA bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ 5760292 ENCODE Processing Pipeline 57cd23fbb6807ef1926017cdddb8efac https://www.encodeproject.org/files/ENCFF357OAA/@@download/ENCFF357OAA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF477IXW bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ, ENCFF131HAH 6680945 ENCODE Processing Pipeline f5b14472ec98f963c35d668b3636b252 https://www.encodeproject.org/files/ENCFF477IXW/@@download/ENCFF477IXW.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF744NXL bed narrowPeak conservative idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF045SMN, ENCFF357OAA, ENCFF477IXW 604775 ENCODE Processing Pipeline ca800c0284be134f57aaacdd0316c355 https://www.encodeproject.org/files/ENCFF744NXL/@@download/ENCFF744NXL.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF948TXN bed narrowPeak optimal idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF045SMN, ENCFF357OAA, ENCFF477IXW 627991 ENCODE Processing Pipeline faf8f9d6ef509ef17dd410cd21d30238 https://www.encodeproject.org/files/ENCFF948TXN/@@download/ENCFF948TXN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF081BXU bigBed narrowPeak optimal idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF948TXN 1030546 ENCODE Processing Pipeline fb4d029fc0dc065266e578a0104d8b5a https://www.encodeproject.org/files/ENCFF081BXU/@@download/ENCFF081BXU.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF155WMI bigBed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF357OAA 10911974 ENCODE Processing Pipeline 25eba44272ae8d14274a0cb5981a34c2 https://www.encodeproject.org/files/ENCFF155WMI/@@download/ENCFF155WMI.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF490TSP bigBed narrowPeak conservative idr thresholded peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF744NXL 999634 ENCODE Processing Pipeline 4e7b83661300dc056c91cf7f37f35640 https://www.encodeproject.org/files/ENCFF490TSP/@@download/ENCFF490TSP.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF190HSK bam unfiltered alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEQ, ENCFF807MUK 1096859858 ENCODE Processing Pipeline e6e0456c81be86bd4d90013e656fa82b https://www.encodeproject.org/files/ENCFF190HSK/@@download/ENCFF190HSK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF455CEC bam unfiltered alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEN, ENCFF807MUK 854566251 ENCODE Processing Pipeline 430fa20c8c9568709495ad73a4e27089 https://www.encodeproject.org/files/ENCFF455CEC/@@download/ENCFF455CEC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002EEN fastq reads ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 602183578 Michael Snyder, Stanford ac9c8d993b7031fe8fc2a3265637f029 https://www.encodeproject.org/files/ENCFF002EEN/@@download/ENCFF002EEN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECS/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF002EEQ fastq reads ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 765378566 Michael Snyder, Stanford 7f2792f1c0f0d915111a6a3978f40220 https://www.encodeproject.org/files/ENCFF002EEQ/@@download/ENCFF002EEQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF252WJR bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEN, ENCFF807MUK 528229056 ENCODE Processing Pipeline 6730353cb78bc9568ed4cb4156f3b64e https://www.encodeproject.org/files/ENCFF252WJR/@@download/ENCFF252WJR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF032JWA bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEQ, ENCFF807MUK 732122949 ENCODE Processing Pipeline b8f8aee503fd73ad8ec77495365b083d https://www.encodeproject.org/files/ENCFF032JWA/@@download/ENCFF032JWA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF370JBU bigWig signal p-value ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF252WJR, ENCFF879OQC 480038742 ENCODE Processing Pipeline d0631d27434b7ea5634901710dcb8eae https://www.encodeproject.org/files/ENCFF370JBU/@@download/ENCFF370JBU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF953XUJ bigWig fold change over control ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF252WJR, ENCFF879OQC 322765175 ENCODE Processing Pipeline 9709e150e02fb2fa1bf6fbf5fe012562 https://www.encodeproject.org/files/ENCFF953XUJ/@@download/ENCFF953XUJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF412BMV bam unfiltered alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEQ, ENCFF643CGH 1101668734 ENCODE Processing Pipeline b4d7cb51b0c66d17dcf1f300928f0818 https://www.encodeproject.org/files/ENCFF412BMV/@@download/ENCFF412BMV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF613SVQ bam unfiltered alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEN, ENCFF643CGH 858519702 ENCODE Processing Pipeline 25c6aa4947f533b70318051018ffdb80 https://www.encodeproject.org/files/ENCFF613SVQ/@@download/ENCFF613SVQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF645RWA bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEN, ENCFF643CGH 527847825 ENCODE Processing Pipeline 820f487652c693befbce97a1a5849fb4 https://www.encodeproject.org/files/ENCFF645RWA/@@download/ENCFF645RWA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF178ZLZ bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEQ, ENCFF643CGH 731573956 ENCODE Processing Pipeline 3c61b4fa870f6363f153cf5d690ad778 https://www.encodeproject.org/files/ENCFF178ZLZ/@@download/ENCFF178ZLZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF412NWE bigWig signal p-value ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF178ZLZ 598692340 ENCODE Processing Pipeline e1a649e6a64b8648c37165f2ff85bf58 https://www.encodeproject.org/files/ENCFF412NWE/@@download/ENCFF412NWE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF169IYA bigWig signal p-value ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF178ZLZ, ENCFF577FNG, ENCFF645RWA 833948437 ENCODE Processing Pipeline 8adb50f90e56a6b4f15d349ef5cca91e https://www.encodeproject.org/files/ENCFF169IYA/@@download/ENCFF169IYA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF662PBS bigWig signal p-value ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF645RWA 472342464 ENCODE Processing Pipeline b71584553908cb118066664eb6188dea https://www.encodeproject.org/files/ENCFF662PBS/@@download/ENCFF662PBS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF497TNF bigWig fold change over control ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF178ZLZ 424805949 ENCODE Processing Pipeline d03559551e517b2258acb459700e2a8c https://www.encodeproject.org/files/ENCFF497TNF/@@download/ENCFF497TNF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF444IFN bigWig fold change over control ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF645RWA 322206722 ENCODE Processing Pipeline 68c564636914bca9065eb3e5f9ba87c7 https://www.encodeproject.org/files/ENCFF444IFN/@@download/ENCFF444IFN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF906LPL bigWig fold change over control ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF178ZLZ, ENCFF577FNG, ENCFF645RWA 856039973 ENCODE Processing Pipeline 9f16c9a02df3378d23bf8b3a8aef01f8 https://www.encodeproject.org/files/ENCFF906LPL/@@download/ENCFF906LPL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF830NUK bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF156FED, ENCFF178ZLZ 4550083 ENCODE Processing Pipeline 1d22768e399fa68a91f676ed08d04f79 https://www.encodeproject.org/files/ENCFF830NUK/@@download/ENCFF830NUK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF439PCX bigBed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF830NUK 10815540 ENCODE Processing Pipeline da861fc8d9921f06514b615dcd9e38a2 https://www.encodeproject.org/files/ENCFF439PCX/@@download/ENCFF439PCX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF419TZM bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF577FNG, ENCFF645RWA 3959022 ENCODE Processing Pipeline b8629234572b6f5ba4ce93b129746849 https://www.encodeproject.org/files/ENCFF419TZM/@@download/ENCFF419TZM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF786LNG bigBed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF867EKJ 11319006 ENCODE Processing Pipeline aa43b5ccd2d97647571484cfe36231c8 https://www.encodeproject.org/files/ENCFF786LNG/@@download/ENCFF786LNG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF692JCC bed narrowPeak conservative idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF419TZM, ENCFF830NUK, ENCFF867EKJ 25940 ENCODE Processing Pipeline d6222009d7edc5f5abcacac82fdec624 https://www.encodeproject.org/files/ENCFF692JCC/@@download/ENCFF692JCC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF867EKJ bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF156FED, ENCFF178ZLZ, ENCFF577FNG, ENCFF645RWA 5623888 ENCODE Processing Pipeline f97f44977f283087288d69206cbdaf33 https://www.encodeproject.org/files/ENCFF867EKJ/@@download/ENCFF867EKJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF290NTC bigBed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF419TZM 10346379 ENCODE Processing Pipeline 91ef1a9b38615e55b6b4f6ca9583fcd8 https://www.encodeproject.org/files/ENCFF290NTC/@@download/ENCFF290NTC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF208QKB bigBed narrowPeak conservative idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF692JCC 84239 ENCODE Processing Pipeline 9310ee5396fd8256aad0d3c0fbb478a9 https://www.encodeproject.org/files/ENCFF208QKB/@@download/ENCFF208QKB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF814QPF bed narrowPeak optimal idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF419TZM, ENCFF830NUK, ENCFF867EKJ 38828 ENCODE Processing Pipeline 6efe277e840603535c2d355e3e357386 https://www.encodeproject.org/files/ENCFF814QPF/@@download/ENCFF814QPF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF037CCA bigBed narrowPeak optimal idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF814QPF 120938 ENCODE Processing Pipeline d84f7e8cfe7fbcc73b941ce8b014423c https://www.encodeproject.org/files/ENCFF037CCA/@@download/ENCFF037CCA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF738HFH bigWig signal p-value ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF032JWA, ENCFF335IPE 517790491 ENCODE Processing Pipeline 94bbb130390e912b8fedff237b6e9eaa https://www.encodeproject.org/files/ENCFF738HFH/@@download/ENCFF738HFH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF479BLX bigWig signal p-value ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF032JWA, ENCFF252WJR, ENCFF335IPE, ENCFF879OQC 955443108 ENCODE Processing Pipeline 47a5be6e1ae4ffe64e7001290d328508 https://www.encodeproject.org/files/ENCFF479BLX/@@download/ENCFF479BLX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF098LLO bigWig fold change over control ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF032JWA, ENCFF335IPE 420926377 ENCODE Processing Pipeline 0b7383f64928687ed7f49ca8071bc426 https://www.encodeproject.org/files/ENCFF098LLO/@@download/ENCFF098LLO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF579RNC bigWig fold change over control ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF032JWA, ENCFF252WJR, ENCFF335IPE, ENCFF879OQC 836546443 ENCODE Processing Pipeline 61a2cb1db60eb0889a44fc1604ea6262 https://www.encodeproject.org/files/ENCFF579RNC/@@download/ENCFF579RNC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF768INF bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF032JWA, ENCFF335IPE 4634504 ENCODE Processing Pipeline 60e806c1ceb638a3a0c87f1778337a5c https://www.encodeproject.org/files/ENCFF768INF/@@download/ENCFF768INF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF705MDG bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF252WJR, ENCFF879OQC 3785736 ENCODE Processing Pipeline 6905e36337bfbfc3113c08a7dce94ecd https://www.encodeproject.org/files/ENCFF705MDG/@@download/ENCFF705MDG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF982FBX bigBed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF768INF 10817727 ENCODE Processing Pipeline b9e5a0ceb403240d5a8137808d47d714 https://www.encodeproject.org/files/ENCFF982FBX/@@download/ENCFF982FBX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF272EQO bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF032JWA, ENCFF252WJR, ENCFF335IPE, ENCFF879OQC 5706825 ENCODE Processing Pipeline 1958202674fdc72b78f63b1d6f780df9 https://www.encodeproject.org/files/ENCFF272EQO/@@download/ENCFF272EQO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF316DIO bigBed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF705MDG 8204274 ENCODE Processing Pipeline 55052cc7085408bc68a4e96c92fda771 https://www.encodeproject.org/files/ENCFF316DIO/@@download/ENCFF316DIO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF963JFK bigBed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF272EQO 11296143 ENCODE Processing Pipeline 51f31eb6a279833c463f3e650b36bdbe https://www.encodeproject.org/files/ENCFF963JFK/@@download/ENCFF963JFK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF577BMW bed narrowPeak conservative idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF272EQO, ENCFF705MDG, ENCFF768INF 27117 ENCODE Processing Pipeline 340b209e0ccc411a758b45101af0a2f7 https://www.encodeproject.org/files/ENCFF577BMW/@@download/ENCFF577BMW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF059TVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF577BMW 100934 ENCODE Processing Pipeline 7ceba259003d35dd4a392bc1f17f002b https://www.encodeproject.org/files/ENCFF059TVQ/@@download/ENCFF059TVQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF387HQP bigBed narrowPeak optimal idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF990CFV 123303 ENCODE Processing Pipeline a31ce5c3d9f0a4bba6de835f6a4f0c01 https://www.encodeproject.org/files/ENCFF387HQP/@@download/ENCFF387HQP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF990CFV bed narrowPeak optimal idr thresholded peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF272EQO, ENCFF705MDG, ENCFF768INF 41921 ENCODE Processing Pipeline 8be2419d12baba94256451bb4acfde78 https://www.encodeproject.org/files/ENCFF990CFV/@@download/ENCFF990CFV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF373PXQ fastq reads ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 1 ENCFF121UFD 2034386928 Michael Snyder, Stanford e44e154aaac0faa465127d02fba99563 https://www.encodeproject.org/files/ENCFF373PXQ/@@download/ENCFF373PXQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF121UFD fastq reads ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 2 ENCFF373PXQ 2093594714 Michael Snyder, Stanford 02e9ee13237cf62770840f5d09dad96c https://www.encodeproject.org/files/ENCFF121UFD/@@download/ENCFF121UFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF150FTW bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF121UFD, ENCFF373PXQ, ENCFF643CGH 4060870584 ENCODE Processing Pipeline b3ea052db5cb911d0d2ae7a479a4235a https://www.encodeproject.org/files/ENCFF150FTW/@@download/ENCFF150FTW.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF179DVI bam unfiltered alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF121UFD, ENCFF373PXQ, ENCFF807MUK 4660584621 ENCODE Processing Pipeline 4f1087dc3e8698e998e3c9fa546ff77c https://www.encodeproject.org/files/ENCFF179DVI/@@download/ENCFF179DVI.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF375TCZ bam unfiltered alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF121UFD, ENCFF373PXQ, ENCFF643CGH 4666578322 ENCODE Processing Pipeline b35c09d31977a08244686359cb85efe0 https://www.encodeproject.org/files/ENCFF375TCZ/@@download/ENCFF375TCZ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF024GDR bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF121UFD, ENCFF373PXQ, ENCFF807MUK 4058049109 ENCODE Processing Pipeline ccf584caa8f44b4242771586adbe16d6 https://www.encodeproject.org/files/ENCFF024GDR/@@download/ENCFF024GDR.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF294XZF bigWig fold change over control ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF150FTW 1328923695 ENCODE Processing Pipeline cc76a99e7d57830d16d6fe3d01ffe9bc https://www.encodeproject.org/files/ENCFF294XZF/@@download/ENCFF294XZF.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF900BEY bigBed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF696DHO 13409218 ENCODE Processing Pipeline d0d7202ad86f60e2edab0314d694e31d https://www.encodeproject.org/files/ENCFF900BEY/@@download/ENCFF900BEY.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF067VMX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF001TDO, ENCFF426PHX 167945 ENCODE Processing Pipeline 3dfb001794652e86860ec0ede59c7360 https://www.encodeproject.org/files/ENCFF067VMX/@@download/ENCFF067VMX.bed.gz hg19 archived missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF426PHX bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF024GDR 6678425 ENCODE Processing Pipeline 612138cae068f0c8f00e20355034589a https://www.encodeproject.org/files/ENCFF426PHX/@@download/ENCFF426PHX.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF696DHO bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF150FTW 6677796 ENCODE Processing Pipeline 22fe979ad16f9cebe932ea7948e69964 https://www.encodeproject.org/files/ENCFF696DHO/@@download/ENCFF696DHO.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF681ZOM bigBed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF426PHX 13399665 ENCODE Processing Pipeline b7338ffc325df0ada61ecd9502438e1f https://www.encodeproject.org/files/ENCFF681ZOM/@@download/ENCFF681ZOM.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF368YRN bigWig signal p-value ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF024GDR 1194169388 ENCODE Processing Pipeline 041cd837a70d5500e8a561f05c7cdbf4 https://www.encodeproject.org/files/ENCFF368YRN/@@download/ENCFF368YRN.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF902DEN bigWig signal p-value ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF150FTW 1332722224 ENCODE Processing Pipeline 383c459d3a13edb8f4c6e4b1df69673c https://www.encodeproject.org/files/ENCFF902DEN/@@download/ENCFF902DEN.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF468AEX bigWig fold change over control ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF024GDR 1300372396 ENCODE Processing Pipeline f4fe36072a79bb618b45641999a058d3 https://www.encodeproject.org/files/ENCFF468AEX/@@download/ENCFF468AEX.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF179KVX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF067VMX 338286 ENCODE Processing Pipeline 88906da9bc2830d2f66a7a423db624ce https://www.encodeproject.org/files/ENCFF179KVX/@@download/ENCFF179KVX.bigBed hg19 archived missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF276YLX fastq reads ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 1 ENCFF556HOO 5039592319 Michael Snyder, Stanford 848eb12b144c31f1de4a57d01ba8ebd6 https://www.encodeproject.org/files/ENCFF276YLX/@@download/ENCFF276YLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF556HOO fastq reads ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 2 ENCFF276YLX 5131636291 Michael Snyder, Stanford d01d28e0f9bf9afd66c3521424de86ca https://www.encodeproject.org/files/ENCFF556HOO/@@download/ENCFF556HOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF940UQQ bam unfiltered alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF276YLX, ENCFF556HOO, ENCFF643CGH 9752839513 ENCODE Processing Pipeline f372866b21a5caa891399a1bbd9041c4 https://www.encodeproject.org/files/ENCFF940UQQ/@@download/ENCFF940UQQ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF481PFA bam unfiltered alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF276YLX, ENCFF556HOO, ENCFF807MUK 9740569182 ENCODE Processing Pipeline 42cf3994caeec7b6d384a51403218899 https://www.encodeproject.org/files/ENCFF481PFA/@@download/ENCFF481PFA.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF769IMV bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF276YLX, ENCFF556HOO, ENCFF643CGH 8384333821 ENCODE Processing Pipeline e8c885736e16133381d8ab1ac3d542a7 https://www.encodeproject.org/files/ENCFF769IMV/@@download/ENCFF769IMV.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF224RMN bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF276YLX, ENCFF556HOO, ENCFF807MUK 8383904294 ENCODE Processing Pipeline 2ed9e21ca7482d5eb57fc11657819e80 https://www.encodeproject.org/files/ENCFF224RMN/@@download/ENCFF224RMN.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF702ZRT bigWig signal p-value ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF224RMN 1485003114 ENCODE Processing Pipeline c8f2cc6fd1f40631c5d163f9dc3eb22d https://www.encodeproject.org/files/ENCFF702ZRT/@@download/ENCFF702ZRT.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF074IPX bigWig fold change over control ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF224RMN 1882604564 ENCODE Processing Pipeline 4444566eafc887996e8dc549942d11d1 https://www.encodeproject.org/files/ENCFF074IPX/@@download/ENCFF074IPX.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF894YQX bigWig signal p-value ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF024GDR, ENCFF224RMN 1939571930 ENCODE Processing Pipeline a8508ee49afce65e05e4f048de0b0ded https://www.encodeproject.org/files/ENCFF894YQX/@@download/ENCFF894YQX.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF906MFU bigWig signal p-value ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF150FTW, ENCFF769IMV 1965819613 ENCODE Processing Pipeline 2942f4b14dc56ec8e91e9b57c056cb57 https://www.encodeproject.org/files/ENCFF906MFU/@@download/ENCFF906MFU.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF913LED bigWig signal p-value ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF769IMV 1880016660 ENCODE Processing Pipeline 25c99d1024ce6a2582ef20c00cc4eaef https://www.encodeproject.org/files/ENCFF913LED/@@download/ENCFF913LED.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF605XTE bigWig fold change over control ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF769IMV 1881070894 ENCODE Processing Pipeline 9b694090d77540f6bb85b202eaad2ac6 https://www.encodeproject.org/files/ENCFF605XTE/@@download/ENCFF605XTE.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF801SGP bigWig fold change over control ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF024GDR, ENCFF224RMN 2221445710 ENCODE Processing Pipeline 86dcca639fdec0346c704a5ba3e6eb2d https://www.encodeproject.org/files/ENCFF801SGP/@@download/ENCFF801SGP.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF357FQB bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF024GDR, ENCFF224RMN 7291509 ENCODE Processing Pipeline 44ece52383103296431354f9b3502c17 https://www.encodeproject.org/files/ENCFF357FQB/@@download/ENCFF357FQB.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF733NTE bigBed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF748IWA 11451649 ENCODE Processing Pipeline 5fb7a21691767745977cac4a30054076 https://www.encodeproject.org/files/ENCFF733NTE/@@download/ENCFF733NTE.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF748IWA bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF224RMN 7008120 ENCODE Processing Pipeline c61eca35286c2a4ce66bb1cd12a50102 https://www.encodeproject.org/files/ENCFF748IWA/@@download/ENCFF748IWA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF683BFM bigBed narrowPeak conservative idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF453DVU 311780 ENCODE Processing Pipeline 8251c2f6a3bfcb8a866795b8e4991021 https://www.encodeproject.org/files/ENCFF683BFM/@@download/ENCFF683BFM.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF447KQW bigWig fold change over control ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF150FTW, ENCFF769IMV 2256666161 ENCODE Processing Pipeline 7af81b888ec1b1b23552d323834ed1b8 https://www.encodeproject.org/files/ENCFF447KQW/@@download/ENCFF447KQW.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF713PBW bigBed narrowPeak optimal idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF647NDG 555827 ENCODE Processing Pipeline 533bfaa7d0787d01843c82424557e1f3 https://www.encodeproject.org/files/ENCFF713PBW/@@download/ENCFF713PBW.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF226CSE bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF769IMV 7003809 ENCODE Processing Pipeline 2eea52b16a8e253a44ef0a8a92cf2b78 https://www.encodeproject.org/files/ENCFF226CSE/@@download/ENCFF226CSE.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF158FHJ bigBed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF357FQB 13353209 ENCODE Processing Pipeline 9ad28e3dda2b46c10ad0ac202642e2ce https://www.encodeproject.org/files/ENCFF158FHJ/@@download/ENCFF158FHJ.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF453DVU bed narrowPeak conservative idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF357FQB, ENCFF426PHX, ENCFF748IWA 152690 ENCODE Processing Pipeline cef1775dafd75c35ce1a4d2da766cd2c https://www.encodeproject.org/files/ENCFF453DVU/@@download/ENCFF453DVU.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF647NDG bed narrowPeak optimal idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF357FQB, ENCFF426PHX, ENCFF748IWA 255529 ENCODE Processing Pipeline f01ebd451ce58a04df2ecacadd6c51d6 https://www.encodeproject.org/files/ENCFF647NDG/@@download/ENCFF647NDG.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF519PCW bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF150FTW, ENCFF769IMV 7288305 ENCODE Processing Pipeline c89e401152d7c69bd043b4ebc5a27cf9 https://www.encodeproject.org/files/ENCFF519PCW/@@download/ENCFF519PCW.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF668KDJ bigBed narrowPeak conservative idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF050UON 308621 ENCODE Processing Pipeline d2b171636b1678e42e99db24641758b0 https://www.encodeproject.org/files/ENCFF668KDJ/@@download/ENCFF668KDJ.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF553IDX bigBed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF519PCW 13385187 ENCODE Processing Pipeline c9b5a17671d10ad92de61a7d37e40c6d https://www.encodeproject.org/files/ENCFF553IDX/@@download/ENCFF553IDX.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF050UON bed narrowPeak conservative idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF226CSE, ENCFF419RSJ, ENCFF519PCW, ENCFF696DHO 149171 ENCODE Processing Pipeline 06122fa62111dbb1155de89290af5ae0 https://www.encodeproject.org/files/ENCFF050UON/@@download/ENCFF050UON.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF572IGF bigBed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF226CSE 11460909 ENCODE Processing Pipeline 0d84c4f9964c5535ca1d384c56dfc503 https://www.encodeproject.org/files/ENCFF572IGF/@@download/ENCFF572IGF.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF514FCB bed narrowPeak optimal idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF226CSE, ENCFF419RSJ, ENCFF519PCW, ENCFF696DHO 259557 ENCODE Processing Pipeline 95ed8212143b4b2118e93f1acdeaf147 https://www.encodeproject.org/files/ENCFF514FCB/@@download/ENCFF514FCB.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF694XTF bigBed narrowPeak optimal idr thresholded peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF514FCB 564054 ENCODE Processing Pipeline 3a9ffa807f4872e28dd9056837a527ce https://www.encodeproject.org/files/ENCFF694XTF/@@download/ENCFF694XTF.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF223ZOA fastq reads ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 1 ENCFF936JQM 2959165190 Michael Snyder, Stanford e78397e5049fc4e1f76158bff3c6dbaa https://www.encodeproject.org/files/ENCFF223ZOA/@@download/ENCFF223ZOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF936JQM fastq reads ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 2 ENCFF223ZOA 3018360486 Michael Snyder, Stanford 8f6af0108deea60985f920ce79a6af30 https://www.encodeproject.org/files/ENCFF936JQM/@@download/ENCFF936JQM.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF751LCL bam unfiltered alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF223ZOA, ENCFF643CGH, ENCFF936JQM 6573222414 ENCODE Processing Pipeline 75999976bb4f823bac324a97fd09f651 https://www.encodeproject.org/files/ENCFF751LCL/@@download/ENCFF751LCL.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF758FKR bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF223ZOA, ENCFF807MUK, ENCFF936JQM 5635160827 ENCODE Processing Pipeline a3bc20bada5b60fc0efed70cf8f71f66 https://www.encodeproject.org/files/ENCFF758FKR/@@download/ENCFF758FKR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF023IPI bam unfiltered alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF223ZOA, ENCFF807MUK, ENCFF936JQM 6567333362 ENCODE Processing Pipeline af70779a81c41e27ff3a35519d5b648f https://www.encodeproject.org/files/ENCFF023IPI/@@download/ENCFF023IPI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF409DHW bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF223ZOA, ENCFF643CGH, ENCFF936JQM 5637347650 ENCODE Processing Pipeline 687bdd7e1e1118983bc6097347c93633 https://www.encodeproject.org/files/ENCFF409DHW/@@download/ENCFF409DHW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF149YMO bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF758FKR 6783639 ENCODE Processing Pipeline d1e8dc94adc8543703addfe0ebb31a68 https://www.encodeproject.org/files/ENCFF149YMO/@@download/ENCFF149YMO.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF830IEK bigWig fold change over control ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF758FKR 1551553781 ENCODE Processing Pipeline 5271995a40553d89e6a33c3cfc76eb86 https://www.encodeproject.org/files/ENCFF830IEK/@@download/ENCFF830IEK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF850JVW bigBed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF149YMO 11256033 ENCODE Processing Pipeline 02b2a0b48f2b9d8baf19f4c6d05b11c6 https://www.encodeproject.org/files/ENCFF850JVW/@@download/ENCFF850JVW.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF551NMW bigWig signal p-value ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF409DHW 1294032494 ENCODE Processing Pipeline 63eb42e4e0d0e04d3c40f4303cce4ea7 https://www.encodeproject.org/files/ENCFF551NMW/@@download/ENCFF551NMW.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF895HAV bigWig fold change over control ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF409DHW 1554161030 ENCODE Processing Pipeline 9f564ca385892d8be41e448f5d9112bf https://www.encodeproject.org/files/ENCFF895HAV/@@download/ENCFF895HAV.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF513DUL bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF409DHW 6781415 ENCODE Processing Pipeline 73254225f2672bb2c0586cc26331a6ab https://www.encodeproject.org/files/ENCFF513DUL/@@download/ENCFF513DUL.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF043YQJ bigWig signal p-value ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF758FKR 1403537514 ENCODE Processing Pipeline c0f6255513de93b5269f43bff3ede2cc https://www.encodeproject.org/files/ENCFF043YQJ/@@download/ENCFF043YQJ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF697DGL bigBed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF513DUL 11266093 ENCODE Processing Pipeline 49bc7ceb7cd0403d1fad3fa518b451c9 https://www.encodeproject.org/files/ENCFF697DGL/@@download/ENCFF697DGL.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF689RWF fastq reads ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 1 ENCFF430LVJ 6402468543 Michael Snyder, Stanford bd8ef962a78c656de52feef1e033cca4 https://www.encodeproject.org/files/ENCFF689RWF/@@download/ENCFF689RWF.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF430LVJ fastq reads ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 2 ENCFF689RWF 6491213959 Michael Snyder, Stanford 654adb7fd6e2882dc53c690d66dc5094 https://www.encodeproject.org/files/ENCFF430LVJ/@@download/ENCFF430LVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF538RED bam unfiltered alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF430LVJ, ENCFF643CGH, ENCFF689RWF 12008543121 ENCODE Processing Pipeline 3f2f54d76effe976d6a55fc32d2db3c4 https://www.encodeproject.org/files/ENCFF538RED/@@download/ENCFF538RED.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF181QKX bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF430LVJ, ENCFF643CGH, ENCFF689RWF 10054522230 ENCODE Processing Pipeline 5c36c30221e1f1484bb5655c33e1e36a https://www.encodeproject.org/files/ENCFF181QKX/@@download/ENCFF181QKX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF732ZHT bam unfiltered alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF430LVJ, ENCFF689RWF, ENCFF807MUK 11994033023 ENCODE Processing Pipeline acf922acd38de3d0536a52200b85ab83 https://www.encodeproject.org/files/ENCFF732ZHT/@@download/ENCFF732ZHT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF799DEL bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF430LVJ, ENCFF689RWF, ENCFF807MUK 10055773344 ENCODE Processing Pipeline 9a14296c1e7c1285b84f585665b99863 https://www.encodeproject.org/files/ENCFF799DEL/@@download/ENCFF799DEL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF914EJE bigWig signal p-value ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF799DEL 1990687114 ENCODE Processing Pipeline 67ab837231bc2dda0ce3020ac881804a https://www.encodeproject.org/files/ENCFF914EJE/@@download/ENCFF914EJE.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF870TXN bigWig signal p-value ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF181QKX 1974339242 ENCODE Processing Pipeline 831338a9ba414ae6eb2bfc7400d77ee6 https://www.encodeproject.org/files/ENCFF870TXN/@@download/ENCFF870TXN.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF583VCP bigWig signal p-value ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF181QKX, ENCFF409DHW 1936906742 ENCODE Processing Pipeline 5383b91793fcdeaaeaeb75cd81d819f7 https://www.encodeproject.org/files/ENCFF583VCP/@@download/ENCFF583VCP.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF821DKL bigWig signal p-value ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF758FKR, ENCFF799DEL 1907978996 ENCODE Processing Pipeline 18c281b9ddc33d519449969f7b4c2f7b https://www.encodeproject.org/files/ENCFF821DKL/@@download/ENCFF821DKL.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF640AZW bigWig fold change over control ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF799DEL 2069800750 ENCODE Processing Pipeline 914146b39c5c294b90718bc101933c92 https://www.encodeproject.org/files/ENCFF640AZW/@@download/ENCFF640AZW.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF482LOD bigWig fold change over control ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF181QKX 2054429902 ENCODE Processing Pipeline 878e76ce157baa285489754ed18eb917 https://www.encodeproject.org/files/ENCFF482LOD/@@download/ENCFF482LOD.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF103ZKD bigWig fold change over control ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF758FKR, ENCFF799DEL 2485554487 ENCODE Processing Pipeline 5501aebb6223c94d29ee0f19353af91f https://www.encodeproject.org/files/ENCFF103ZKD/@@download/ENCFF103ZKD.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF902JQV bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF799DEL 6883464 ENCODE Processing Pipeline 33d39689d6ffdc189ce8cd64e48bb0a7 https://www.encodeproject.org/files/ENCFF902JQV/@@download/ENCFF902JQV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF978QZR bigWig fold change over control ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF181QKX, ENCFF409DHW 2519046938 ENCODE Processing Pipeline 27191cfbf0b87bfb3248f6585d2237b0 https://www.encodeproject.org/files/ENCFF978QZR/@@download/ENCFF978QZR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF764KMY bigBed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF812ITJ 11151064 ENCODE Processing Pipeline 6f54949a3bfa494ca667f29deeec9b61 https://www.encodeproject.org/files/ENCFF764KMY/@@download/ENCFF764KMY.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF812ITJ bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF758FKR, ENCFF799DEL 7190620 ENCODE Processing Pipeline c239418709109e652d0ee87aaacd32e3 https://www.encodeproject.org/files/ENCFF812ITJ/@@download/ENCFF812ITJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF449KAJ bigBed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF902JQV 11356262 ENCODE Processing Pipeline 617713779cad3badd2e95fe9a7358660 https://www.encodeproject.org/files/ENCFF449KAJ/@@download/ENCFF449KAJ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF520OWT bigBed narrowPeak conservative idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF308PJP 202991 ENCODE Processing Pipeline c92994a620f30897ef6bd109a7407335 https://www.encodeproject.org/files/ENCFF520OWT/@@download/ENCFF520OWT.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF093TRT bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF181QKX, ENCFF409DHW 7186253 ENCODE Processing Pipeline 3a95b34eeddd4347833220442c93d432 https://www.encodeproject.org/files/ENCFF093TRT/@@download/ENCFF093TRT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF308PJP bed narrowPeak conservative idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF149YMO, ENCFF812ITJ, ENCFF902JQV 79820 ENCODE Processing Pipeline 998423fbe1754a7fbf1a8f31d3680055 https://www.encodeproject.org/files/ENCFF308PJP/@@download/ENCFF308PJP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF645PAP bigBed narrowPeak optimal idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF819CJP 301896 ENCODE Processing Pipeline 9e97e1ef25fb30d77907181721285ea1 https://www.encodeproject.org/files/ENCFF645PAP/@@download/ENCFF645PAP.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF819CJP bed narrowPeak optimal idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF149YMO, ENCFF812ITJ, ENCFF902JQV 144016 ENCODE Processing Pipeline 2156fdda2e2fc6c76ba2aefcabee04b0 https://www.encodeproject.org/files/ENCFF819CJP/@@download/ENCFF819CJP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF042MWM bigBed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF093TRT 11169410 ENCODE Processing Pipeline 55068ec9dc9b8ddd9f80544d8dcbb907 https://www.encodeproject.org/files/ENCFF042MWM/@@download/ENCFF042MWM.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF713BAD bed narrowPeak optimal idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF093TRT, ENCFF414NBA, ENCFF419RSJ, ENCFF513DUL 143365 ENCODE Processing Pipeline f4219627b1a9d47ec3fd2c6dce00021f https://www.encodeproject.org/files/ENCFF713BAD/@@download/ENCFF713BAD.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF154UPM bigBed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF414NBA 11375164 ENCODE Processing Pipeline 0e523b3172c524e55b49018bd2615098 https://www.encodeproject.org/files/ENCFF154UPM/@@download/ENCFF154UPM.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF582LFC bigBed narrowPeak conservative idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF821EAG 204724 ENCODE Processing Pipeline fbdeb0d1e3ef6cb14164d97f9892b655 https://www.encodeproject.org/files/ENCFF582LFC/@@download/ENCFF582LFC.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF821EAG bed narrowPeak conservative idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF093TRT, ENCFF414NBA, ENCFF419RSJ, ENCFF513DUL 80534 ENCODE Processing Pipeline 348ca6ff4351c52147ebb5d05105b6ca https://www.encodeproject.org/files/ENCFF821EAG/@@download/ENCFF821EAG.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF414NBA bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF181QKX 6882722 ENCODE Processing Pipeline 9424fcf1b5ce0d431480421253b8f942 https://www.encodeproject.org/files/ENCFF414NBA/@@download/ENCFF414NBA.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF487FUY bigBed narrowPeak optimal idr thresholded peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF713BAD 302683 ENCODE Processing Pipeline c6ad9a9afae7b369eb3acc8e1dca63be https://www.encodeproject.org/files/ENCFF487FUY/@@download/ENCFF487FUY.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF948IGU fastq reads ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 1 50 single-ended 1630735498 Richard Myers, HAIB 64a0666b8761a1c683a4e01755d457f2 https://www.encodeproject.org/files/ENCFF948IGU/@@download/ENCFF948IGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF101KOG fastq reads ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 1 50 single-ended 1484272433 Richard Myers, HAIB 4b0b7a762357371b1173c11ed6574be1 https://www.encodeproject.org/files/ENCFF101KOG/@@download/ENCFF101KOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF958NMQ/ released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF072HUA bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 50 ENCFF101KOG, ENCFF807MUK 1243926251 ENCODE Processing Pipeline 84cebc34c1184189a9b1cb9c45cd7844 https://www.encodeproject.org/files/ENCFF072HUA/@@download/ENCFF072HUA.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF996GBL bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 50 ENCFF807MUK, ENCFF948IGU 1303889288 ENCODE Processing Pipeline 209f60ceaf566dd626b38d1e0ab7981c https://www.encodeproject.org/files/ENCFF996GBL/@@download/ENCFF996GBL.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF409ZCP bigWig signal p-value ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 972780566 ENCODE Processing Pipeline 00532d2f898ec51ca1ceb794f8fda5ed https://www.encodeproject.org/files/ENCFF409ZCP/@@download/ENCFF409ZCP.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF208KVO bigWig signal p-value ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 1099207673 ENCODE Processing Pipeline 4f44c5264ea5cb2685495214568371be https://www.encodeproject.org/files/ENCFF208KVO/@@download/ENCFF208KVO.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF930VIY bigWig fold change over control ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 985469102 ENCODE Processing Pipeline 30da1d21f840915e26ff9bd55be8c3af https://www.encodeproject.org/files/ENCFF930VIY/@@download/ENCFF930VIY.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF633JGF bigWig fold change over control ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 1390634770 ENCODE Processing Pipeline 4c64278f83aa9a18eee79649829fd34b https://www.encodeproject.org/files/ENCFF633JGF/@@download/ENCFF633JGF.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF431MMB bam unfiltered alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 50 ENCFF643CGH, ENCFF948IGU 1742105468 ENCODE Processing Pipeline ef2b8e893acf7544cf0fe4e359c07424 https://www.encodeproject.org/files/ENCFF431MMB/@@download/ENCFF431MMB.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF146XFQ bam unfiltered alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 50 ENCFF101KOG, ENCFF643CGH 1651822694 ENCODE Processing Pipeline 568a18c1799fa379e5763335a03f1540 https://www.encodeproject.org/files/ENCFF146XFQ/@@download/ENCFF146XFQ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF872NJT bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 50 ENCFF643CGH, ENCFF948IGU 1303725632 ENCODE Processing Pipeline 836fea98dd9ad4461b9e2a7c5032f6a7 https://www.encodeproject.org/files/ENCFF872NJT/@@download/ENCFF872NJT.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF158EVG bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 50 ENCFF101KOG, ENCFF643CGH 1243907432 ENCODE Processing Pipeline 267ba9d41c57ad72643183f89582a6e4 https://www.encodeproject.org/files/ENCFF158EVG/@@download/ENCFF158EVG.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF688RSF bigWig signal p-value ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF370PSF, ENCFF872NJT, ENCFF995OIG 1104279949 ENCODE Processing Pipeline 2dc06f0b1af0cfe8e14711c224f539a8 https://www.encodeproject.org/files/ENCFF688RSF/@@download/ENCFF688RSF.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF993MXC bigWig signal p-value ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF158EVG, ENCFF370PSF, ENCFF995OIG 980665319 ENCODE Processing Pipeline 7ec827e5f240ed26e8bf322f4247cbd4 https://www.encodeproject.org/files/ENCFF993MXC/@@download/ENCFF993MXC.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF758TQJ bigWig signal p-value ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF158EVG, ENCFF370PSF, ENCFF872NJT, ENCFF995OIG 1189825139 ENCODE Processing Pipeline 2baf00ecc82d491f8c2c831d1eab840f https://www.encodeproject.org/files/ENCFF758TQJ/@@download/ENCFF758TQJ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF926HIG bigWig fold change over control ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF370PSF, ENCFF872NJT, ENCFF995OIG 964739904 ENCODE Processing Pipeline 330dc7de0a2a4b170bac32754f5663d0 https://www.encodeproject.org/files/ENCFF926HIG/@@download/ENCFF926HIG.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF308OQK bigWig fold change over control ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF158EVG, ENCFF370PSF, ENCFF995OIG 872879278 ENCODE Processing Pipeline 5d2a30fac52c38caa0a1a4bf5026f0c4 https://www.encodeproject.org/files/ENCFF308OQK/@@download/ENCFF308OQK.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF491SLY bigWig fold change over control ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF158EVG, ENCFF370PSF, ENCFF872NJT, ENCFF995OIG 1401413733 ENCODE Processing Pipeline 4b2e9b4d6a385a0bd4dd0b18dce9c142 https://www.encodeproject.org/files/ENCFF491SLY/@@download/ENCFF491SLY.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF371RAL bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF370PSF, ENCFF872NJT, ENCFF995OIG 6634143 ENCODE Processing Pipeline 0903203cf8454119203f359ff788dfe5 https://www.encodeproject.org/files/ENCFF371RAL/@@download/ENCFF371RAL.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF815CRR bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF158EVG, ENCFF370PSF, ENCFF872NJT, ENCFF995OIG 6910473 ENCODE Processing Pipeline 3d077e4d0dee42f9b4a8c3d0b3148d69 https://www.encodeproject.org/files/ENCFF815CRR/@@download/ENCFF815CRR.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF575LSG bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF158EVG, ENCFF370PSF, ENCFF995OIG 6377569 ENCODE Processing Pipeline 491c030b8efa3bed2b7edc3eaebb2ca0 https://www.encodeproject.org/files/ENCFF575LSG/@@download/ENCFF575LSG.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF073ICG bigBed narrowPeak optimal idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF572MCI 1745751 ENCODE Processing Pipeline 1aa31a4ec121eb2d04be85a644a30375 https://www.encodeproject.org/files/ENCFF073ICG/@@download/ENCFF073ICG.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF228DHO bigBed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF371RAL 13257241 ENCODE Processing Pipeline 221a4f2293a17b1691b600361cc4fdc3 https://www.encodeproject.org/files/ENCFF228DHO/@@download/ENCFF228DHO.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF161KKK bigBed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF575LSG 13457446 ENCODE Processing Pipeline bde398a8e10d41b72eb9865c98ad7e0c https://www.encodeproject.org/files/ENCFF161KKK/@@download/ENCFF161KKK.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF420GLO bed narrowPeak conservative idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF371RAL, ENCFF419RSJ, ENCFF575LSG, ENCFF815CRR 826591 ENCODE Processing Pipeline 471480362d10ba6300977846259b63a8 https://www.encodeproject.org/files/ENCFF420GLO/@@download/ENCFF420GLO.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF572MCI bed narrowPeak optimal idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF371RAL, ENCFF419RSJ, ENCFF575LSG, ENCFF815CRR 964237 ENCODE Processing Pipeline fbce958427fe15d56e57ed56493c8cd8 https://www.encodeproject.org/files/ENCFF572MCI/@@download/ENCFF572MCI.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF788APD bigBed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF815CRR 13368986 ENCODE Processing Pipeline 36b5c0daa90b1e64188833a0c98b6748 https://www.encodeproject.org/files/ENCFF788APD/@@download/ENCFF788APD.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF569CRH bigBed narrowPeak conservative idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF420GLO 1546041 ENCODE Processing Pipeline 9cfe10c0869c8fb22133d098582de1cd https://www.encodeproject.org/files/ENCFF569CRH/@@download/ENCFF569CRH.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF224MUB bam unfiltered alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 50 ENCFF101KOG, ENCFF807MUK 1644845499 ENCODE Processing Pipeline 02a72068d104e593718198f7efee742b https://www.encodeproject.org/files/ENCFF224MUB/@@download/ENCFF224MUB.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF950UTE bam unfiltered alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 50 ENCFF807MUK, ENCFF948IGU 1735210453 ENCODE Processing Pipeline d1d28d107490cb0079e53d5826a65814 https://www.encodeproject.org/files/ENCFF950UTE/@@download/ENCFF950UTE.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF981AXT bigBed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF020HWP 13249186 ENCODE Processing Pipeline 8a1eea2b927ad6874981a987acef745f https://www.encodeproject.org/files/ENCFF981AXT/@@download/ENCFF981AXT.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF608HOD bigBed narrowPeak optimal idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF651LIG 1726527 ENCODE Processing Pipeline 15f4127c7f31195e456001e29033d6bf https://www.encodeproject.org/files/ENCFF608HOD/@@download/ENCFF608HOD.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF020HWP bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 6634671 ENCODE Processing Pipeline 0d09ae1e0cb8d35555e34cc86cf8e059 https://www.encodeproject.org/files/ENCFF020HWP/@@download/ENCFF020HWP.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF328XQD bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 6918847 ENCODE Processing Pipeline ac045cd892158be3a3f217cea3ed07ae https://www.encodeproject.org/files/ENCFF328XQD/@@download/ENCFF328XQD.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF212XAD bigBed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF458DFL 13450152 ENCODE Processing Pipeline 8468eb18259cc81dea7771abf1b483c4 https://www.encodeproject.org/files/ENCFF212XAD/@@download/ENCFF212XAD.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF021MYB bigWig signal p-value ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU 1023541411 ENCODE Processing Pipeline bea552a868749ee5cf1a33110155e6c6 https://www.encodeproject.org/files/ENCFF021MYB/@@download/ENCFF021MYB.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF399JCJ bigWig fold change over control ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU 891330510 ENCODE Processing Pipeline e82ebc0bdb7fb64400c377c36d2200cc https://www.encodeproject.org/files/ENCFF399JCJ/@@download/ENCFF399JCJ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF006NSS bigBed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF328XQD 13375632 ENCODE Processing Pipeline 9bf328812eabe6950f7d4ccea3ac9b2f https://www.encodeproject.org/files/ENCFF006NSS/@@download/ENCFF006NSS.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF002OGO bed narrowPeak conservative idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF020HWP, ENCFF328XQD, ENCFF458DFL 827169 ENCODE Processing Pipeline 8b043c31741059c7e5c30c366f7c7c3a https://www.encodeproject.org/files/ENCFF002OGO/@@download/ENCFF002OGO.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF458DFL bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU 6376793 ENCODE Processing Pipeline f94c47f74adfa13548a2c652b02b6dab https://www.encodeproject.org/files/ENCFF458DFL/@@download/ENCFF458DFL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF725UGL bigBed narrowPeak conservative idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF002OGO 1547877 ENCODE Processing Pipeline 0be197bbba2c97383a3e423cf07fb948 https://www.encodeproject.org/files/ENCFF725UGL/@@download/ENCFF725UGL.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF651LIG bed narrowPeak optimal idr thresholded peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF020HWP, ENCFF328XQD, ENCFF458DFL 950321 ENCODE Processing Pipeline c598205029cccfb7ff103ac57aaddb1e https://www.encodeproject.org/files/ENCFF651LIG/@@download/ENCFF651LIG.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF524NND fastq reads ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF665GYY 2954554551 Michael Snyder, Stanford 5db6207623ac79cfa1bcf7ac6e4b64ee SRA:SRR5111779 https://www.encodeproject.org/files/ENCFF524NND/@@download/ENCFF524NND.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF155JSY fastq reads ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF795PET 3115384766 Michael Snyder, Stanford 7886091dc51730a60afb3efabd00fe41 SRA:SRR5111778 https://www.encodeproject.org/files/ENCFF155JSY/@@download/ENCFF155JSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF795PET fastq reads ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF155JSY 3126239785 Michael Snyder, Stanford 755a9ca01c9f8baf4b58288d779aa9e9 SRA:SRR5111778 https://www.encodeproject.org/files/ENCFF795PET/@@download/ENCFF795PET.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF665GYY fastq reads ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF524NND 2963198868 Michael Snyder, Stanford 56d2f38ea7d5bbc95668a9c574f5ac83 SRA:SRR5111779 https://www.encodeproject.org/files/ENCFF665GYY/@@download/ENCFF665GYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF355OYP bam unfiltered alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF524NND, ENCFF643CGH, ENCFF665GYY 6437112335 ENCODE Processing Pipeline 2d820ad43cfadd9039dbf9cc6236e9cd https://www.encodeproject.org/files/ENCFF355OYP/@@download/ENCFF355OYP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF038MAB bam unfiltered alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF155JSY, ENCFF643CGH, ENCFF795PET 6774172927 ENCODE Processing Pipeline efd40bdab1821499da3ed511c71c4a9e https://www.encodeproject.org/files/ENCFF038MAB/@@download/ENCFF038MAB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF229DWS bam unfiltered alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF524NND, ENCFF665GYY, ENCFF807MUK 6431307039 ENCODE Processing Pipeline de263ef2bc704bc743f5ba5a450a172a https://www.encodeproject.org/files/ENCFF229DWS/@@download/ENCFF229DWS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF908WHM bam unfiltered alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF155JSY, ENCFF795PET, ENCFF807MUK 6767930173 ENCODE Processing Pipeline 2fdaf77d95f589b3ef5b21bd9e729bf8 https://www.encodeproject.org/files/ENCFF908WHM/@@download/ENCFF908WHM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF318TPO bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF524NND, ENCFF643CGH, ENCFF665GYY 5442478333 ENCODE Processing Pipeline 4417ce45111097d7a2dff2642f08da6f https://www.encodeproject.org/files/ENCFF318TPO/@@download/ENCFF318TPO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF100KZW bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF155JSY, ENCFF643CGH, ENCFF795PET 5691810636 ENCODE Processing Pipeline 119b5747f34156e335fa2f1b59c5a398 https://www.encodeproject.org/files/ENCFF100KZW/@@download/ENCFF100KZW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF440TNK bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF155JSY, ENCFF795PET, ENCFF807MUK 5689514574 ENCODE Processing Pipeline d0cd9c0eedc84a883f55ef3091812310 https://www.encodeproject.org/files/ENCFF440TNK/@@download/ENCFF440TNK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF109PJP bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF524NND, ENCFF665GYY, ENCFF807MUK 5440645946 ENCODE Processing Pipeline 19be7a4aea3a880a127d73ee41bde480 https://www.encodeproject.org/files/ENCFF109PJP/@@download/ENCFF109PJP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF386SMA bigWig signal p-value ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440TNK 1416750047 ENCODE Processing Pipeline 13af0880ba217b6a239dce4d85a01890 https://www.encodeproject.org/files/ENCFF386SMA/@@download/ENCFF386SMA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF690BDX bigWig signal p-value ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF109PJP 1513427724 ENCODE Processing Pipeline 871eff93e0ba650397ab51a346484f94 https://www.encodeproject.org/files/ENCFF690BDX/@@download/ENCFF690BDX.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF477BNE bigWig signal p-value ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF109PJP, ENCFF440TNK 1962994672 ENCODE Processing Pipeline ee6d3d113ed45b0299cc0731add468a9 https://www.encodeproject.org/files/ENCFF477BNE/@@download/ENCFF477BNE.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF462CAZ bigWig fold change over control ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440TNK 1523455929 ENCODE Processing Pipeline 6561fe653a89e544782bbdba6a9fa825 https://www.encodeproject.org/files/ENCFF462CAZ/@@download/ENCFF462CAZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF578PUV bigWig fold change over control ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF109PJP 1482305217 ENCODE Processing Pipeline b745ee6eeaa7d2af77a288c82c8268af https://www.encodeproject.org/files/ENCFF578PUV/@@download/ENCFF578PUV.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF342SQC bigWig fold change over control ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF109PJP, ENCFF440TNK 2098804275 ENCODE Processing Pipeline b7035cc5810f6d48385be66c13da3453 https://www.encodeproject.org/files/ENCFF342SQC/@@download/ENCFF342SQC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF183ZGX bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440TNK 7128965 ENCODE Processing Pipeline cf824e36526ea91a4ceadd076c1a679a https://www.encodeproject.org/files/ENCFF183ZGX/@@download/ENCFF183ZGX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF003IXO bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF109PJP 7076238 ENCODE Processing Pipeline c32e816799131e5106bfd66405078f0e https://www.encodeproject.org/files/ENCFF003IXO/@@download/ENCFF003IXO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF322OJB bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF109PJP, ENCFF440TNK 7276630 ENCODE Processing Pipeline 21d538254214b776bc70e0f2d0a3659c https://www.encodeproject.org/files/ENCFF322OJB/@@download/ENCFF322OJB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF021KIC bigBed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF183ZGX 13279939 ENCODE Processing Pipeline 5d592fb6931891960aef2ae5ce8c2d81 https://www.encodeproject.org/files/ENCFF021KIC/@@download/ENCFF021KIC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF243UNY bigBed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF003IXO 13228224 ENCODE Processing Pipeline ee8d001a81d423feebb7c24a510777e9 https://www.encodeproject.org/files/ENCFF243UNY/@@download/ENCFF243UNY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF816VTT bigBed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF322OJB 13132418 ENCODE Processing Pipeline 4528b5d5d191bc4c1888ad3e64089852 https://www.encodeproject.org/files/ENCFF816VTT/@@download/ENCFF816VTT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF065ULP bed narrowPeak conservative idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF003IXO, ENCFF183ZGX, ENCFF322OJB 648207 ENCODE Processing Pipeline 2116845ba7430455da7b3ed33111c1b4 https://www.encodeproject.org/files/ENCFF065ULP/@@download/ENCFF065ULP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF918OPB bigBed narrowPeak conservative idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF065ULP 1475397 ENCODE Processing Pipeline b200cc97d5c372254f536f1af732994c https://www.encodeproject.org/files/ENCFF918OPB/@@download/ENCFF918OPB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF030UCM bed narrowPeak optimal idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF003IXO, ENCFF183ZGX, ENCFF322OJB 678456 ENCODE Processing Pipeline aff53e270d5d2fec994de04a47f1108c https://www.encodeproject.org/files/ENCFF030UCM/@@download/ENCFF030UCM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF221FPC bigBed narrowPeak optimal idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF030UCM 1539285 ENCODE Processing Pipeline 48b724f51a07ba4274f4b51c90b0bf5d https://www.encodeproject.org/files/ENCFF221FPC/@@download/ENCFF221FPC.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF255RZN bigWig signal p-value ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF100KZW 1433527849 ENCODE Processing Pipeline ba1bc36b89f649ff017619495292b15c https://www.encodeproject.org/files/ENCFF255RZN/@@download/ENCFF255RZN.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF228TAY bigWig signal p-value ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF318TPO 1460098729 ENCODE Processing Pipeline eeb53d807ace9b344f70be11baf419ff https://www.encodeproject.org/files/ENCFF228TAY/@@download/ENCFF228TAY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF326BKB bigWig signal p-value ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF100KZW, ENCFF318TPO 1971295977 ENCODE Processing Pipeline 2348a3c6f3c57c309f42733ab9bce9c1 https://www.encodeproject.org/files/ENCFF326BKB/@@download/ENCFF326BKB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF002YRE bigWig fold change over control ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF100KZW 1544078525 ENCODE Processing Pipeline 5eb298049fd858dbb4ab853ad77c5f3f https://www.encodeproject.org/files/ENCFF002YRE/@@download/ENCFF002YRE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF591SMP bigWig fold change over control ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF318TPO 1482686794 ENCODE Processing Pipeline 7f06620cedb39fffdb77afdf7faf754b https://www.encodeproject.org/files/ENCFF591SMP/@@download/ENCFF591SMP.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF856FNH bigWig fold change over control ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF100KZW, ENCFF318TPO 2112454430 ENCODE Processing Pipeline bf31e1ce9dcfc4a61a0f24f8c10ed4a2 https://www.encodeproject.org/files/ENCFF856FNH/@@download/ENCFF856FNH.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF644DZY bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF100KZW 7056858 ENCODE Processing Pipeline 1eacdfffb372311c68c1f1f00c4ea0e8 https://www.encodeproject.org/files/ENCFF644DZY/@@download/ENCFF644DZY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF579YTL bigBed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF421FOJ 13280630 ENCODE Processing Pipeline 93050f1762416b8a15b356e90375a222 https://www.encodeproject.org/files/ENCFF579YTL/@@download/ENCFF579YTL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF421FOJ bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF318TPO 7069140 ENCODE Processing Pipeline bdc6339cc810fd29b9555f28e28a44bc https://www.encodeproject.org/files/ENCFF421FOJ/@@download/ENCFF421FOJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF610YLG bigBed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF644DZY 13277843 ENCODE Processing Pipeline 9c8872fcca1359c98308a4bb8815875b https://www.encodeproject.org/files/ENCFF610YLG/@@download/ENCFF610YLG.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF903OJL bed narrowPeak optimal idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF312JXQ, ENCFF419RSJ, ENCFF421FOJ, ENCFF644DZY 672063 ENCODE Processing Pipeline 053e6d0022236af02bbcd20436f0026b https://www.encodeproject.org/files/ENCFF903OJL/@@download/ENCFF903OJL.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF957QMY bigBed narrowPeak optimal idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF903OJL 1523404 ENCODE Processing Pipeline 3b4d08b9ce1a9385902ee0aee007532d https://www.encodeproject.org/files/ENCFF957QMY/@@download/ENCFF957QMY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF312JXQ bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF100KZW, ENCFF318TPO 7290878 ENCODE Processing Pipeline 1f903dfb6a5c8ec27f83682b2a0686ce https://www.encodeproject.org/files/ENCFF312JXQ/@@download/ENCFF312JXQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF682AFZ bed narrowPeak conservative idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF312JXQ, ENCFF419RSJ, ENCFF421FOJ, ENCFF644DZY 656709 ENCODE Processing Pipeline 376ed122992a404a4d4b06a676e35b6c https://www.encodeproject.org/files/ENCFF682AFZ/@@download/ENCFF682AFZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF048RDY bigBed narrowPeak conservative idr thresholded peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF682AFZ 1485846 ENCODE Processing Pipeline f3252859259d6804de23bac6c0b546a8 https://www.encodeproject.org/files/ENCFF048RDY/@@download/ENCFF048RDY.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF507QLR bigBed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF312JXQ 13159541 ENCODE Processing Pipeline 437ade2c3ebbbb083625804b70413f17 https://www.encodeproject.org/files/ENCFF507QLR/@@download/ENCFF507QLR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF528KYA bam unfiltered alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 100 ENCFF516QHN, ENCFF807MUK, ENCFF943CAF 4425708223 ENCODE Processing Pipeline 132e1f844828099489517de1d3eba0dd https://www.encodeproject.org/files/ENCFF528KYA/@@download/ENCFF528KYA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF516QHN fastq reads ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 1 ENCFF943CAF 1997043108 Michael Snyder, Stanford 3e07e9192f119c1caef9b336448c1b56 https://www.encodeproject.org/files/ENCFF516QHN/@@download/ENCFF516QHN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF943CAF fastq reads ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 1 100 paired-ended 2 ENCFF516QHN 2055353844 Michael Snyder, Stanford 2b7be7fff697666811fbf952e310c393 https://www.encodeproject.org/files/ENCFF943CAF/@@download/ENCFF943CAF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF613ITI bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 100 ENCFF516QHN, ENCFF807MUK, ENCFF943CAF 3569550645 ENCODE Processing Pipeline 7d59da154e7bb99f3ca44464904ab67b https://www.encodeproject.org/files/ENCFF613ITI/@@download/ENCFF613ITI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF806HUN bigWig signal p-value ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF581ZJL, ENCFF613ITI 1038703920 ENCODE Processing Pipeline 44c5c484e87456cd2746b0a0777831ae https://www.encodeproject.org/files/ENCFF806HUN/@@download/ENCFF806HUN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF647PWF bigWig fold change over control ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF581ZJL, ENCFF613ITI 1102112612 ENCODE Processing Pipeline 282acfcc5defc526bdd7909a0a8a9ca6 https://www.encodeproject.org/files/ENCFF647PWF/@@download/ENCFF647PWF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF822VOO fastq reads ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 1 ENCFF439UCU 1971862518 Michael Snyder, Stanford 68f772e2a1c89d1133ba962f64a31843 https://www.encodeproject.org/files/ENCFF822VOO/@@download/ENCFF822VOO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF439UCU fastq reads ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 1 101 paired-ended 2 ENCFF822VOO 2007254235 Michael Snyder, Stanford 0cad77681d293b7959ca8b6da96ee06c https://www.encodeproject.org/files/ENCFF439UCU/@@download/ENCFF439UCU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF028IYI bam unfiltered alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 101 ENCFF439UCU, ENCFF643CGH, ENCFF822VOO 4023089003 ENCODE Processing Pipeline d79d8d1070c5904d632497da225a6845 https://www.encodeproject.org/files/ENCFF028IYI/@@download/ENCFF028IYI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF356BYE bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 101 ENCFF439UCU, ENCFF643CGH, ENCFF822VOO 3508195908 ENCODE Processing Pipeline b7a4c443b7de336acd607460f97ef983 https://www.encodeproject.org/files/ENCFF356BYE/@@download/ENCFF356BYE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF404QQV bam unfiltered alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 101 ENCFF439UCU, ENCFF807MUK, ENCFF822VOO 4018262401 ENCODE Processing Pipeline 03e29014b870b1e7eadc490ca257dba6 https://www.encodeproject.org/files/ENCFF404QQV/@@download/ENCFF404QQV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF881KLW bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 101 ENCFF439UCU, ENCFF807MUK, ENCFF822VOO 3507161365 ENCODE Processing Pipeline b6c67d7e88e2b5dbf6e450033f33e30d https://www.encodeproject.org/files/ENCFF881KLW/@@download/ENCFF881KLW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF170GHC bam unfiltered alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 100 ENCFF516QHN, ENCFF643CGH, ENCFF943CAF 4430646233 ENCODE Processing Pipeline 33b794799d89785b02eb132007f12048 https://www.encodeproject.org/files/ENCFF170GHC/@@download/ENCFF170GHC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF021VLL bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 100 ENCFF516QHN, ENCFF643CGH, ENCFF943CAF 3571652453 ENCODE Processing Pipeline f34c7303c29a5a5f7a6236d5b160b80a https://www.encodeproject.org/files/ENCFF021VLL/@@download/ENCFF021VLL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF996RNA bigWig signal p-value ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF227IZS, ENCFF356BYE 1094614505 ENCODE Processing Pipeline e1c7e0f76ab28d71f03ffb7d55ad2c51 https://www.encodeproject.org/files/ENCFF996RNA/@@download/ENCFF996RNA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF472TXN bigWig signal p-value ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF021VLL, ENCFF910IKB 1076686374 ENCODE Processing Pipeline 22fc38bd55109a6c5cd018206e1b4fe3 https://www.encodeproject.org/files/ENCFF472TXN/@@download/ENCFF472TXN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF429VEY bigWig signal p-value ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF021VLL, ENCFF227IZS, ENCFF356BYE, ENCFF910IKB 1574449704 ENCODE Processing Pipeline feeb2c70eb0df12d2aaf51cd3c951887 https://www.encodeproject.org/files/ENCFF429VEY/@@download/ENCFF429VEY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF308NHY bigWig fold change over control ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF021VLL, ENCFF227IZS, ENCFF356BYE, ENCFF910IKB 1977073518 ENCODE Processing Pipeline 9bb7c6cf3670f76a5135993cc2d4bbd0 https://www.encodeproject.org/files/ENCFF308NHY/@@download/ENCFF308NHY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF124AFH bigBed narrowPeak conservative idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF130MXC 21212 ENCODE Processing Pipeline 7a0501841b93860ebc43c29125a5ef04 https://www.encodeproject.org/files/ENCFF124AFH/@@download/ENCFF124AFH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF130MXC bed narrowPeak conservative idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF008ITM, ENCFF419RSJ, ENCFF642DPR, ENCFF939LTQ 3442 ENCODE Processing Pipeline b02b92c4a0f64c8e745cafb5fff9301c https://www.encodeproject.org/files/ENCFF130MXC/@@download/ENCFF130MXC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF043HHG bed narrowPeak optimal idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF008ITM, ENCFF419RSJ, ENCFF642DPR, ENCFF939LTQ 8520 ENCODE Processing Pipeline 8ff0c4e146cfe8601a640e74403858e6 https://www.encodeproject.org/files/ENCFF043HHG/@@download/ENCFF043HHG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF765TLM bigWig fold change over control ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF021VLL, ENCFF910IKB 1089805290 ENCODE Processing Pipeline 38522a81f979891205f0ab9dd34729ea https://www.encodeproject.org/files/ENCFF765TLM/@@download/ENCFF765TLM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF008ITM bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF021VLL, ENCFF910IKB 6078039 ENCODE Processing Pipeline fd60b350b788d292449f744ae4fabcd0 https://www.encodeproject.org/files/ENCFF008ITM/@@download/ENCFF008ITM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF939LTQ bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF227IZS, ENCFF356BYE 5654521 ENCODE Processing Pipeline f58e8d9d26f87058a3acdc25238daedd https://www.encodeproject.org/files/ENCFF939LTQ/@@download/ENCFF939LTQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF642DPR bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF021VLL, ENCFF227IZS, ENCFF356BYE, ENCFF910IKB 6929722 ENCODE Processing Pipeline d90bbee0c3d7e591d22d19b1514ea4d0 https://www.encodeproject.org/files/ENCFF642DPR/@@download/ENCFF642DPR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF152NIC bigBed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF008ITM 11167714 ENCODE Processing Pipeline f0fc3154de6ee92147c83479bfe051da https://www.encodeproject.org/files/ENCFF152NIC/@@download/ENCFF152NIC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF518JUA bigBed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF642DPR 11068585 ENCODE Processing Pipeline a899382008911758d3f90fa484f382a2 https://www.encodeproject.org/files/ENCFF518JUA/@@download/ENCFF518JUA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF796PYM bigWig fold change over control ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF227IZS, ENCFF356BYE 1019707318 ENCODE Processing Pipeline c622b1c4ea8432422c220dd8fe6202ec https://www.encodeproject.org/files/ENCFF796PYM/@@download/ENCFF796PYM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF159DOK bigBed narrowPeak optimal idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF043HHG 76212 ENCODE Processing Pipeline 89da075d7828065d04443ff6a3321b34 https://www.encodeproject.org/files/ENCFF159DOK/@@download/ENCFF159DOK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF337TRG bigBed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF939LTQ 11152257 ENCODE Processing Pipeline c4471212676408894717348bafaa20f8 https://www.encodeproject.org/files/ENCFF337TRG/@@download/ENCFF337TRG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF479HNZ bigWig signal p-value ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF051LWI, ENCFF881KLW 1008630438 ENCODE Processing Pipeline 39444d63893d8506e368cebaa545988a https://www.encodeproject.org/files/ENCFF479HNZ/@@download/ENCFF479HNZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF748BNI bigBed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF741JEM 11149068 ENCODE Processing Pipeline 5024232fb867d8ed7ca858449a670b0d https://www.encodeproject.org/files/ENCFF748BNI/@@download/ENCFF748BNI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF392XDZ bigBed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF618BMZ 11047113 ENCODE Processing Pipeline 84c583bd5785488962f4216ebd1f3b92 https://www.encodeproject.org/files/ENCFF392XDZ/@@download/ENCFF392XDZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF741JEM bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF581ZJL, ENCFF613ITI 6082606 ENCODE Processing Pipeline e9cf509e0928ce9255a8ef9dbf14ea80 https://www.encodeproject.org/files/ENCFF741JEM/@@download/ENCFF741JEM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF157WMV bigBed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF640CQW 11136148 ENCODE Processing Pipeline ed506e51885138e9e47905786fd8dafc https://www.encodeproject.org/files/ENCFF157WMV/@@download/ENCFF157WMV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF067LIW bed narrowPeak optimal idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF001TDO, ENCFF618BMZ, ENCFF640CQW, ENCFF741JEM 8712 ENCODE Processing Pipeline 3eb34480957ee92672d0d8d3fcf633bc https://www.encodeproject.org/files/ENCFF067LIW/@@download/ENCFF067LIW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF252XAX bigWig fold change over control ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF051LWI, ENCFF881KLW 1022040463 ENCODE Processing Pipeline 2a210805c239cb11a39510aba1b728e2 https://www.encodeproject.org/files/ENCFF252XAX/@@download/ENCFF252XAX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF907SAR bigWig fold change over control ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF613ITI, ENCFF881KLW 1977172155 ENCODE Processing Pipeline f0837db0f52c621c49bec92108094ccd https://www.encodeproject.org/files/ENCFF907SAR/@@download/ENCFF907SAR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF964ANH bigBed narrowPeak optimal idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF067LIW 75655 ENCODE Processing Pipeline 0a6751afb56d2d3ae8d491aed72c665d https://www.encodeproject.org/files/ENCFF964ANH/@@download/ENCFF964ANH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF296WUC bigWig signal p-value ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF613ITI, ENCFF881KLW 1676517254 ENCODE Processing Pipeline e321ba8d91298970faa08b6b0793e03d https://www.encodeproject.org/files/ENCFF296WUC/@@download/ENCFF296WUC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF639GZB bigBed narrowPeak conservative idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF845VHM 80297 ENCODE Processing Pipeline 5e9275a7f12729c58352f9d29794b153 https://www.encodeproject.org/files/ENCFF639GZB/@@download/ENCFF639GZB.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF640CQW bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 ENCFF051LWI, ENCFF881KLW 5656188 ENCODE Processing Pipeline e3fc2d90c98c5c1431fc9b5fd6830d4d https://www.encodeproject.org/files/ENCFF640CQW/@@download/ENCFF640CQW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF618BMZ bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF613ITI, ENCFF881KLW 6933331 ENCODE Processing Pipeline 63dc876bc2caaf2e6eebb33a359d49c7 https://www.encodeproject.org/files/ENCFF618BMZ/@@download/ENCFF618BMZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF845VHM bed narrowPeak conservative idr thresholded peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1, 3 ENCFF001TDO, ENCFF618BMZ, ENCFF640CQW, ENCFF741JEM 3759 ENCODE Processing Pipeline 0af8892b50f5c7b3c77bd102498fc0b2 https://www.encodeproject.org/files/ENCFF845VHM/@@download/ENCFF845VHM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF653KYN fastq reads ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF220OFM 2980904377 Michael Snyder, Stanford 615c0350c3399a41816d023b5e121941 SRA:SRR6214414 https://www.encodeproject.org/files/ENCFF653KYN/@@download/ENCFF653KYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF220OFM fastq reads ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF653KYN 2919066536 Michael Snyder, Stanford 918c46622b03bfe627a386e01ab91ae7 SRA:SRR6214414 https://www.encodeproject.org/files/ENCFF220OFM/@@download/ENCFF220OFM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF874XYT bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF804SDU, ENCFF807MUK, ENCFF841EZY 4545847603 ENCODE Processing Pipeline 3f480e988222f63c4bedc1a98aeb7831 https://www.encodeproject.org/files/ENCFF874XYT/@@download/ENCFF874XYT.bam hg19 released ENCFF006NUZ bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF220OFM, ENCFF653KYN, ENCFF807MUK 5075042659 ENCODE Processing Pipeline 4fe13e909b6a390a26c756dbc2b7ef78 https://www.encodeproject.org/files/ENCFF006NUZ/@@download/ENCFF006NUZ.bam hg19 released ENCFF841EZY fastq reads ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF804SDU 2540703786 Michael Snyder, Stanford 9a0e30e267def590f0921a427fa61db5 SRA:SRR6214413 https://www.encodeproject.org/files/ENCFF841EZY/@@download/ENCFF841EZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF804SDU fastq reads ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF841EZY 2614396391 Michael Snyder, Stanford 620d5fa4ac35274759e6f9da1247d571 SRA:SRR6214413 https://www.encodeproject.org/files/ENCFF804SDU/@@download/ENCFF804SDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF184EQF bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF643CGH, ENCFF804SDU, ENCFF841EZY 4558041911 ENCODE Processing Pipeline 3b7a77028176251c14244005c077fae9 https://www.encodeproject.org/files/ENCFF184EQF/@@download/ENCFF184EQF.bam GRCh38 released ENCFF206CHM bam unfiltered alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF643CGH, ENCFF804SDU, ENCFF841EZY 5470708827 ENCODE Processing Pipeline 917fa24592f8b9e091da17b2a28db2da https://www.encodeproject.org/files/ENCFF206CHM/@@download/ENCFF206CHM.bam GRCh38 released ENCFF306ADO bam unfiltered alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF220OFM, ENCFF643CGH, ENCFF653KYN 6195528511 ENCODE Processing Pipeline 0892cfdeab9c4c2bd1887e45e504ad30 https://www.encodeproject.org/files/ENCFF306ADO/@@download/ENCFF306ADO.bam GRCh38 released ENCFF520GWV bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF220OFM, ENCFF643CGH, ENCFF653KYN 5096913202 ENCODE Processing Pipeline 16c3b4c5f9b2231f0ed15945f0af258d https://www.encodeproject.org/files/ENCFF520GWV/@@download/ENCFF520GWV.bam GRCh38 released ENCFF584ZUP bigWig signal p-value ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF291AFY, ENCFF520GWV 957481212 ENCODE Processing Pipeline 0beab11242a2729d0cb3720bd5af458d https://www.encodeproject.org/files/ENCFF584ZUP/@@download/ENCFF584ZUP.bigWig GRCh38 released ENCFF046JKT bigWig signal p-value ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF184EQF, ENCFF291AFY, ENCFF426RDP, ENCFF520GWV 2054007260 ENCODE Processing Pipeline f737485e1b41295eca433d5a8163c12e https://www.encodeproject.org/files/ENCFF046JKT/@@download/ENCFF046JKT.bigWig GRCh38 released ENCFF583VSJ bigWig signal p-value ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF184EQF, ENCFF426RDP 952268225 ENCODE Processing Pipeline cf01838a11e60152a1029e864ff1b0ff https://www.encodeproject.org/files/ENCFF583VSJ/@@download/ENCFF583VSJ.bigWig GRCh38 released ENCFF138RWU bigWig fold change over control ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF184EQF, ENCFF426RDP 1119777553 ENCODE Processing Pipeline 396282f42e2275ef961796b3dc0955e4 https://www.encodeproject.org/files/ENCFF138RWU/@@download/ENCFF138RWU.bigWig GRCh38 released ENCFF819EIQ bigWig fold change over control ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF291AFY, ENCFF520GWV 1176178465 ENCODE Processing Pipeline 382e14611575b3891c52664389df11b0 https://www.encodeproject.org/files/ENCFF819EIQ/@@download/ENCFF819EIQ.bigWig GRCh38 released ENCFF848PUB bigWig fold change over control ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF184EQF, ENCFF291AFY, ENCFF426RDP, ENCFF520GWV 2130566001 ENCODE Processing Pipeline 0385e61c1234f98a8338bf8ffd6ea320 https://www.encodeproject.org/files/ENCFF848PUB/@@download/ENCFF848PUB.bigWig GRCh38 released ENCFF587YGQ bigBed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF949ZLO 13579316 ENCODE Processing Pipeline 0b22c9b40c5121e15d54662932467b9a https://www.encodeproject.org/files/ENCFF587YGQ/@@download/ENCFF587YGQ.bigBed GRCh38 released ENCFF476SRE bigBed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF901ZBM 13700835 ENCODE Processing Pipeline 2fc9635887319fe2d66d0df182ac5f3c https://www.encodeproject.org/files/ENCFF476SRE/@@download/ENCFF476SRE.bigBed GRCh38 released ENCFF356LKG bed narrowPeak conservative idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF466AJA, ENCFF901ZBM, ENCFF949ZLO 636141 ENCODE Processing Pipeline 5266944f774b53d9a2729cfd16523057 https://www.encodeproject.org/files/ENCFF356LKG/@@download/ENCFF356LKG.bed.gz GRCh38 released ENCFF901ZBM bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF291AFY, ENCFF520GWV 6856458 ENCODE Processing Pipeline 826002b16e02513a7343ca9cbb9a9c9c https://www.encodeproject.org/files/ENCFF901ZBM/@@download/ENCFF901ZBM.bed.gz GRCh38 released ENCFF949ZLO bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF184EQF, ENCFF426RDP 6721899 ENCODE Processing Pipeline cbfe8f8b9a41fea7a44733f0ca795e86 https://www.encodeproject.org/files/ENCFF949ZLO/@@download/ENCFF949ZLO.bed.gz GRCh38 released ENCFF495PCJ bed narrowPeak optimal idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF419RSJ, ENCFF466AJA, ENCFF901ZBM, ENCFF949ZLO 889650 ENCODE Processing Pipeline 1cdebe7e84a9190618e3b49d01d01c42 https://www.encodeproject.org/files/ENCFF495PCJ/@@download/ENCFF495PCJ.bed.gz GRCh38 released ENCFF842TNI bigBed narrowPeak optimal idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF495PCJ 1832033 ENCODE Processing Pipeline 89dfabb000bf7f2a64e243917c2eb8c1 https://www.encodeproject.org/files/ENCFF842TNI/@@download/ENCFF842TNI.bigBed GRCh38 released ENCFF466AJA bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF184EQF, ENCFF291AFY, ENCFF426RDP, ENCFF520GWV 7253414 ENCODE Processing Pipeline 3c5a2c2184bca8bf7911edc3bbe915c0 https://www.encodeproject.org/files/ENCFF466AJA/@@download/ENCFF466AJA.bed.gz GRCh38 released ENCFF381AWB bigBed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF466AJA 13874889 ENCODE Processing Pipeline f140c52f3343cdfc2a1029c8bca38bc7 https://www.encodeproject.org/files/ENCFF381AWB/@@download/ENCFF381AWB.bigBed GRCh38 released ENCFF935QGM bigBed narrowPeak conservative idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF356LKG 1117005 ENCODE Processing Pipeline 3ff63fd4de0805837dda16e670969047 https://www.encodeproject.org/files/ENCFF935QGM/@@download/ENCFF935QGM.bigBed GRCh38 released ENCFF266QHE bam unfiltered alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF220OFM, ENCFF653KYN, ENCFF807MUK 6192465834 ENCODE Processing Pipeline 0383e473318fd9d44c3f617249abdbbb https://www.encodeproject.org/files/ENCFF266QHE/@@download/ENCFF266QHE.bam hg19 released ENCFF045EWS bam unfiltered alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF804SDU, ENCFF807MUK, ENCFF841EZY 5465493827 ENCODE Processing Pipeline c3dad6f8536fd6fee30ba81a5200c74a https://www.encodeproject.org/files/ENCFF045EWS/@@download/ENCFF045EWS.bam hg19 released ENCFF634HLA bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF006NUZ, ENCFF049MPQ, ENCFF583FAG, ENCFF874XYT 7243077 ENCODE Processing Pipeline dfa06fad560bf9175c99fd5326d8f520 https://www.encodeproject.org/files/ENCFF634HLA/@@download/ENCFF634HLA.bed.gz hg19 released ENCFF521INM bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF006NUZ, ENCFF049MPQ 6861644 ENCODE Processing Pipeline 69eef2d9139100c43c30084d19211fe5 https://www.encodeproject.org/files/ENCFF521INM/@@download/ENCFF521INM.bed.gz hg19 released ENCFF585ASH bigWig signal p-value ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF006NUZ, ENCFF049MPQ 1075065308 ENCODE Processing Pipeline 9f918a6f4d146a6e7c8970c345fd0e39 https://www.encodeproject.org/files/ENCFF585ASH/@@download/ENCFF585ASH.bigWig hg19 released ENCFF041PVA bigWig signal p-value ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF583FAG, ENCFF874XYT 1170892395 ENCODE Processing Pipeline af29d94be88af1366d813f6202bc84d8 https://www.encodeproject.org/files/ENCFF041PVA/@@download/ENCFF041PVA.bigWig hg19 released ENCFF501XYA bigWig signal p-value ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF006NUZ, ENCFF049MPQ, ENCFF583FAG, ENCFF874XYT 2055527786 ENCODE Processing Pipeline 6c199490ac5ace777b1561e976dfe80a https://www.encodeproject.org/files/ENCFF501XYA/@@download/ENCFF501XYA.bigWig hg19 released ENCFF008VYM bigWig fold change over control ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF006NUZ, ENCFF049MPQ 1178919837 ENCODE Processing Pipeline d8da1f3e1318df686f5a787ff9a4da49 https://www.encodeproject.org/files/ENCFF008VYM/@@download/ENCFF008VYM.bigWig hg19 released ENCFF387WAL bigWig fold change over control ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF583FAG, ENCFF874XYT 1114191754 ENCODE Processing Pipeline a91fa1e2703c6fcee440f8155fd2375c https://www.encodeproject.org/files/ENCFF387WAL/@@download/ENCFF387WAL.bigWig hg19 released ENCFF890XEY bigWig fold change over control ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF006NUZ, ENCFF049MPQ, ENCFF583FAG, ENCFF874XYT 2124295930 ENCODE Processing Pipeline 7dfdb40c9cf9ba05adac1952a2bbf6aa https://www.encodeproject.org/files/ENCFF890XEY/@@download/ENCFF890XEY.bigWig hg19 released ENCFF351PGN bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF583FAG, ENCFF874XYT 6677591 ENCODE Processing Pipeline 544d520441bbeb7d2df6d5c9a665e174 https://www.encodeproject.org/files/ENCFF351PGN/@@download/ENCFF351PGN.bed.gz hg19 released ENCFF127RVQ bed narrowPeak optimal idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF351PGN, ENCFF521INM, ENCFF634HLA 881747 ENCODE Processing Pipeline 2f0a214c3caca2c724991bc88dc1434a https://www.encodeproject.org/files/ENCFF127RVQ/@@download/ENCFF127RVQ.bed.gz hg19 released ENCFF635JML bigBed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF521INM 13707322 ENCODE Processing Pipeline 817a73c651b0753629b7b251583c4c57 https://www.encodeproject.org/files/ENCFF635JML/@@download/ENCFF635JML.bigBed hg19 released ENCFF911KEB bigBed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF351PGN 13550618 ENCODE Processing Pipeline 54f2fc6acc4399dc64982a848c4cb9e1 https://www.encodeproject.org/files/ENCFF911KEB/@@download/ENCFF911KEB.bigBed hg19 released ENCFF344AFF bigBed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF634HLA 13851986 ENCODE Processing Pipeline f34771ca4cff147f88f31ef73d05f87a https://www.encodeproject.org/files/ENCFF344AFF/@@download/ENCFF344AFF.bigBed hg19 released ENCFF104HUI bigBed narrowPeak optimal idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF127RVQ 1811807 ENCODE Processing Pipeline 4e2449ea1226904bd3c52120c19ac65e https://www.encodeproject.org/files/ENCFF104HUI/@@download/ENCFF104HUI.bigBed hg19 released ENCFF553DRN bed narrowPeak conservative idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF351PGN, ENCFF521INM, ENCFF634HLA 628519 ENCODE Processing Pipeline c60c81722b6a3407985794d0069d0905 https://www.encodeproject.org/files/ENCFF553DRN/@@download/ENCFF553DRN.bed.gz hg19 released ENCFF870NEJ bigBed narrowPeak conservative idr thresholded peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF553DRN 1098666 ENCODE Processing Pipeline b5c02ac56f67357d4df934803362094a https://www.encodeproject.org/files/ENCFF870NEJ/@@download/ENCFF870NEJ.bigBed hg19 released ENCFF004IXE fastq reads ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF488GZC 3140405199 Michael Snyder, Stanford ffa797d2b87a17020e5400eb152076c7 SRA:SRR5111053 https://www.encodeproject.org/files/ENCFF004IXE/@@download/ENCFF004IXE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF238CVL fastq reads ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF964ENU 3616217596 Michael Snyder, Stanford e14e4efa545915c97be67ff193e380ee SRA:SRR5111054 https://www.encodeproject.org/files/ENCFF238CVL/@@download/ENCFF238CVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF488GZC fastq reads ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF004IXE 3148575802 Michael Snyder, Stanford da0b58403044d1bc1b18fcab9dac3f97 SRA:SRR5111053 https://www.encodeproject.org/files/ENCFF488GZC/@@download/ENCFF488GZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF964ENU fastq reads ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF238CVL 3608102992 Michael Snyder, Stanford ac63cc7eeff426918518f2b94fb29a4a SRA:SRR5111054 https://www.encodeproject.org/files/ENCFF964ENU/@@download/ENCFF964ENU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF797YKF bam unfiltered alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF004IXE, ENCFF488GZC, ENCFF807MUK 6720207322 ENCODE Processing Pipeline ceb6a4f8154ad57480daff741a3b5e16 https://www.encodeproject.org/files/ENCFF797YKF/@@download/ENCFF797YKF.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF221TDT bam unfiltered alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF238CVL, ENCFF643CGH, ENCFF964ENU 7639833053 ENCODE Processing Pipeline 32be710ad699946e363e1740267f8c31 https://www.encodeproject.org/files/ENCFF221TDT/@@download/ENCFF221TDT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF868LYK bam unfiltered alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF238CVL, ENCFF807MUK, ENCFF964ENU 7633648971 ENCODE Processing Pipeline daca0d7ff21ff0987e5e7dbb261ba9a9 https://www.encodeproject.org/files/ENCFF868LYK/@@download/ENCFF868LYK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF707ROC bam unfiltered alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF004IXE, ENCFF488GZC, ENCFF643CGH 6726693637 ENCODE Processing Pipeline 52df5caf37c8b5d23b298b520fd687cf https://www.encodeproject.org/files/ENCFF707ROC/@@download/ENCFF707ROC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF936RIU bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF004IXE, ENCFF488GZC, ENCFF807MUK 5855315735 ENCODE Processing Pipeline fbf07e099d54d9fb88c28f4b5c06e262 https://www.encodeproject.org/files/ENCFF936RIU/@@download/ENCFF936RIU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF687TGC bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF004IXE, ENCFF488GZC, ENCFF643CGH 5857433687 ENCODE Processing Pipeline 7ad906af1f88fe0b664488d0f0f3c641 https://www.encodeproject.org/files/ENCFF687TGC/@@download/ENCFF687TGC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF573QVR bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF238CVL, ENCFF807MUK, ENCFF964ENU 6602304366 ENCODE Processing Pipeline 6a0bb3450d22277c119cc1e7f6248f43 https://www.encodeproject.org/files/ENCFF573QVR/@@download/ENCFF573QVR.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF205IQB bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF238CVL, ENCFF643CGH, ENCFF964ENU 6604808076 ENCODE Processing Pipeline de35fb5813dca95c1dde49e45b750618 https://www.encodeproject.org/files/ENCFF205IQB/@@download/ENCFF205IQB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF824ATB bigWig signal p-value ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF936RIU 1282812344 ENCODE Processing Pipeline 7aab2e91df07f2176000db7e6dae8605 https://www.encodeproject.org/files/ENCFF824ATB/@@download/ENCFF824ATB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF029ANH bigWig signal p-value ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF573QVR 1405751663 ENCODE Processing Pipeline 0e5e292ad3ce7637312262cb2c190697 https://www.encodeproject.org/files/ENCFF029ANH/@@download/ENCFF029ANH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF196JZC bigWig signal p-value ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF573QVR, ENCFF936RIU 1916866664 ENCODE Processing Pipeline b3e0888872b29c47d639664663eee6b7 https://www.encodeproject.org/files/ENCFF196JZC/@@download/ENCFF196JZC.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF514YNW bigWig fold change over control ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF936RIU 1534639240 ENCODE Processing Pipeline a9982e6a8b97a0629360d3ec1898589e https://www.encodeproject.org/files/ENCFF514YNW/@@download/ENCFF514YNW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF266DWU bigWig fold change over control ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF573QVR 1664812493 ENCODE Processing Pipeline fb6376e99540f260b81bcc21f9c197f2 https://www.encodeproject.org/files/ENCFF266DWU/@@download/ENCFF266DWU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF556MBS bigWig fold change over control ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF573QVR, ENCFF936RIU 2181958856 ENCODE Processing Pipeline 375e8033c09530a3319c5451f4aeae05 https://www.encodeproject.org/files/ENCFF556MBS/@@download/ENCFF556MBS.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF541BRL bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF936RIU 7125164 ENCODE Processing Pipeline 91db03fbe4ae49f16c8960b71530eb58 https://www.encodeproject.org/files/ENCFF541BRL/@@download/ENCFF541BRL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF598AUH bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF573QVR 7129641 ENCODE Processing Pipeline 325ec239d352f4d4e132a813effc169e https://www.encodeproject.org/files/ENCFF598AUH/@@download/ENCFF598AUH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF377KPG bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF573QVR, ENCFF936RIU 7169352 ENCODE Processing Pipeline 2379f6a982695e0c9d059675df358021 https://www.encodeproject.org/files/ENCFF377KPG/@@download/ENCFF377KPG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF126NUI bigBed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF541BRL 12471388 ENCODE Processing Pipeline efd31042cd30e1dc772c0ae7536daf44 https://www.encodeproject.org/files/ENCFF126NUI/@@download/ENCFF126NUI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF892COA bigBed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF598AUH 12529732 ENCODE Processing Pipeline 1a3ab6a5cc790922dcd59d1c01b24c47 https://www.encodeproject.org/files/ENCFF892COA/@@download/ENCFF892COA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF492EIF bigBed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF377KPG 12554480 ENCODE Processing Pipeline 6fd81b4c3e78527072505eddb5213b37 https://www.encodeproject.org/files/ENCFF492EIF/@@download/ENCFF492EIF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF215KBX bed narrowPeak conservative idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF377KPG, ENCFF541BRL, ENCFF598AUH 905007 ENCODE Processing Pipeline b8031db5bf9b6b1d53c93bc3c3d9173c https://www.encodeproject.org/files/ENCFF215KBX/@@download/ENCFF215KBX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF546ECR bigBed narrowPeak conservative idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF215KBX 1936433 ENCODE Processing Pipeline a7acdbaf96835df7fa21260206cf3f1f https://www.encodeproject.org/files/ENCFF546ECR/@@download/ENCFF546ECR.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF775EAL bed narrowPeak optimal idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF377KPG, ENCFF541BRL, ENCFF598AUH 912187 ENCODE Processing Pipeline a75bd4616bd12df4785d4ebf9370b90f https://www.encodeproject.org/files/ENCFF775EAL/@@download/ENCFF775EAL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF989OQV bigBed narrowPeak optimal idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF775EAL 1955608 ENCODE Processing Pipeline 9bf1a87d31312c0e46f4c06ce7563f8e https://www.encodeproject.org/files/ENCFF989OQV/@@download/ENCFF989OQV.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF667AAJ bigWig signal p-value ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF687TGC 1377131126 ENCODE Processing Pipeline a1af7b0e627a14c85e14b1fd400f5b2d https://www.encodeproject.org/files/ENCFF667AAJ/@@download/ENCFF667AAJ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF794GSM bigWig signal p-value ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF205IQB 1271702792 ENCODE Processing Pipeline 582f6bf257c48d6781da01e61b377d0e https://www.encodeproject.org/files/ENCFF794GSM/@@download/ENCFF794GSM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF373DPA bigWig signal p-value ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF205IQB, ENCFF687TGC 1925924649 ENCODE Processing Pipeline 25d9dd4ecadae1e1f90ebd4daa408cd0 https://www.encodeproject.org/files/ENCFF373DPA/@@download/ENCFF373DPA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF593WBF bigWig fold change over control ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF687TGC 1535453377 ENCODE Processing Pipeline 4ec86bd7a9deeb89872668173fb5a1b8 https://www.encodeproject.org/files/ENCFF593WBF/@@download/ENCFF593WBF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF072MYQ bigWig fold change over control ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF205IQB 1602149549 ENCODE Processing Pipeline 6e65f294df0b860ab87df665c06b2158 https://www.encodeproject.org/files/ENCFF072MYQ/@@download/ENCFF072MYQ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF820KSO bigWig fold change over control ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF205IQB, ENCFF687TGC 2193743746 ENCODE Processing Pipeline 1403bf08e0937f5edfd2b8d6df43ae57 https://www.encodeproject.org/files/ENCFF820KSO/@@download/ENCFF820KSO.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF965HNP bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF205IQB 7181164 ENCODE Processing Pipeline 6b06ea95af8f749b740cbfde55e93ced https://www.encodeproject.org/files/ENCFF965HNP/@@download/ENCFF965HNP.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF951SVZ bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF205IQB, ENCFF687TGC 7188801 ENCODE Processing Pipeline 89b04fce119858231f739d3b3ab44125 https://www.encodeproject.org/files/ENCFF951SVZ/@@download/ENCFF951SVZ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF598FVO bigBed narrowPeak conservative idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF920GRL 1950386 ENCODE Processing Pipeline bd7dbb7073407aeadaf00d7981cee5d8 https://www.encodeproject.org/files/ENCFF598FVO/@@download/ENCFF598FVO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF226XZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF332LIJ 1954303 ENCODE Processing Pipeline 8a795340c8f112ac5ca37954d0dea38d https://www.encodeproject.org/files/ENCFF226XZZ/@@download/ENCFF226XZZ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF096ZNV bigBed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF834GUN 12465027 ENCODE Processing Pipeline 87c1265164e0e350453924dcb80fa505 https://www.encodeproject.org/files/ENCFF096ZNV/@@download/ENCFF096ZNV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF644MMS bigBed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF951SVZ 12577343 ENCODE Processing Pipeline 1767632f6ba8c38e5d1d7855c6041fb4 https://www.encodeproject.org/files/ENCFF644MMS/@@download/ENCFF644MMS.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF834GUN bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF687TGC 7113702 ENCODE Processing Pipeline 0def6735bd3d5bdd616a8295684d6b5f https://www.encodeproject.org/files/ENCFF834GUN/@@download/ENCFF834GUN.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF514GUL bigBed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF965HNP 12595744 ENCODE Processing Pipeline fe79d57d7f37edbded73585ec7c9df41 https://www.encodeproject.org/files/ENCFF514GUL/@@download/ENCFF514GUL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF332LIJ bed narrowPeak optimal idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF834GUN, ENCFF951SVZ, ENCFF965HNP 911079 ENCODE Processing Pipeline 7110092664ed9d048bb59490ae1a2355 https://www.encodeproject.org/files/ENCFF332LIJ/@@download/ENCFF332LIJ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF920GRL bed narrowPeak conservative idr thresholded peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF834GUN, ENCFF951SVZ, ENCFF965HNP 914915 ENCODE Processing Pipeline 650211746803dd300a98d67d5e24d6ca https://www.encodeproject.org/files/ENCFF920GRL/@@download/ENCFF920GRL.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF132PBK bam unfiltered alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF019YFW, ENCFF807MUK, ENCFF904VSC 4537654061 ENCODE Processing Pipeline 0a3e5fe5279bf3a45b2cdd3457d2b9c6 https://www.encodeproject.org/files/ENCFF132PBK/@@download/ENCFF132PBK.bam hg19 released ENCFF722JXP bam unfiltered alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF133BYL, ENCFF173ENM, ENCFF807MUK 5694179316 ENCODE Processing Pipeline 63a6a1fcf16b735e85b799d3e2cca93d https://www.encodeproject.org/files/ENCFF722JXP/@@download/ENCFF722JXP.bam hg19 released ENCFF173ENM fastq reads ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 1 100 paired-ended 2 ENCFF133BYL 2633340240 Michael Snyder, Stanford fdf16339a9b54690066691d68490d04c SRA:SRR5111588 https://www.encodeproject.org/files/ENCFF173ENM/@@download/ENCFF173ENM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF019YFW fastq reads ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 1 ENCFF904VSC 1995505814 Michael Snyder, Stanford 7b78db3917b4aca4622203f88170fd56 SRA:SRR5111589 https://www.encodeproject.org/files/ENCFF019YFW/@@download/ENCFF019YFW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF133BYL fastq reads ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 1 100 paired-ended 1 ENCFF173ENM 2570763618 Michael Snyder, Stanford 780e0c1615f0556c35724707c25d7a67 SRA:SRR5111588 https://www.encodeproject.org/files/ENCFF133BYL/@@download/ENCFF133BYL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF904VSC fastq reads ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 2 ENCFF019YFW 2058120910 Michael Snyder, Stanford fd4298ab769130e23756c8f663f7528e SRA:SRR5111589 https://www.encodeproject.org/files/ENCFF904VSC/@@download/ENCFF904VSC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF404GUE bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF019YFW, ENCFF807MUK, ENCFF904VSC 3854703399 ENCODE Processing Pipeline 20666916718642ce30e407f9777cae8f https://www.encodeproject.org/files/ENCFF404GUE/@@download/ENCFF404GUE.bam hg19 released ENCFF736VZV bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF133BYL, ENCFF173ENM, ENCFF807MUK 4855861662 ENCODE Processing Pipeline 638a3702433e03511b1b3bcaaf4b07e2 https://www.encodeproject.org/files/ENCFF736VZV/@@download/ENCFF736VZV.bam hg19 released ENCFF571UYJ bam unfiltered alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF019YFW, ENCFF643CGH, ENCFF904VSC 4546631522 ENCODE Processing Pipeline b735ed92082b6cac0574ef9f0bfcb1cc https://www.encodeproject.org/files/ENCFF571UYJ/@@download/ENCFF571UYJ.bam GRCh38 released ENCFF346ZCU bam unfiltered alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF133BYL, ENCFF173ENM, ENCFF643CGH 5704777044 ENCODE Processing Pipeline 2f1f92b87ad1dbff37e31c25e86334b8 https://www.encodeproject.org/files/ENCFF346ZCU/@@download/ENCFF346ZCU.bam GRCh38 released ENCFF442WFR bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF019YFW, ENCFF643CGH, ENCFF904VSC 3860159616 ENCODE Processing Pipeline 66d2e2035dd01a99fa75f7b0c3fcbfd0 https://www.encodeproject.org/files/ENCFF442WFR/@@download/ENCFF442WFR.bam GRCh38 released ENCFF023VUT bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF133BYL, ENCFF173ENM, ENCFF643CGH 4863125242 ENCODE Processing Pipeline 7b8c7ddc9c807e8ec52500c863f8f0c7 https://www.encodeproject.org/files/ENCFF023VUT/@@download/ENCFF023VUT.bam GRCh38 released ENCFF765CRV bigWig signal p-value ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF291AFY, ENCFF442WFR 990864610 ENCODE Processing Pipeline 2a28212b2f220f17e7334cdbbc399841 https://www.encodeproject.org/files/ENCFF765CRV/@@download/ENCFF765CRV.bigWig GRCh38 released ENCFF457CVD bigWig signal p-value ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF023VUT, ENCFF426RDP 889645514 ENCODE Processing Pipeline d01adaa7d9552242a2b125a9c4c8b627 https://www.encodeproject.org/files/ENCFF457CVD/@@download/ENCFF457CVD.bigWig GRCh38 released ENCFF249NRB bigWig signal p-value ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF023VUT, ENCFF291AFY, ENCFF426RDP, ENCFF442WFR 1524592502 ENCODE Processing Pipeline ada5f9a0aafac603d821557d42271ab8 https://www.encodeproject.org/files/ENCFF249NRB/@@download/ENCFF249NRB.bigWig GRCh38 released ENCFF662VFA bigWig fold change over control ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF291AFY, ENCFF442WFR 1058685342 ENCODE Processing Pipeline 86ba7bc63abbf84b8e01d880a5d2250a https://www.encodeproject.org/files/ENCFF662VFA/@@download/ENCFF662VFA.bigWig GRCh38 released ENCFF422RVA bigWig fold change over control ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF023VUT, ENCFF426RDP 1134367617 ENCODE Processing Pipeline 770111d6bbaa6b8d875f54922dd49329 https://www.encodeproject.org/files/ENCFF422RVA/@@download/ENCFF422RVA.bigWig GRCh38 released ENCFF131IDT bigWig fold change over control ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF023VUT, ENCFF291AFY, ENCFF426RDP, ENCFF442WFR 2030849042 ENCODE Processing Pipeline 27ce1705a9df8cf1fa667c039102486b https://www.encodeproject.org/files/ENCFF131IDT/@@download/ENCFF131IDT.bigWig GRCh38 released ENCFF274GXU bed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF291AFY, ENCFF442WFR 6084568 ENCODE Processing Pipeline 48d85601e6e08ff0cbb42d9b636ba8eb https://www.encodeproject.org/files/ENCFF274GXU/@@download/ENCFF274GXU.bed.gz GRCh38 released ENCFF888YMQ bigBed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF274GXU 11183618 ENCODE Processing Pipeline b71285d2d91544f86c2129d885d42783 https://www.encodeproject.org/files/ENCFF888YMQ/@@download/ENCFF888YMQ.bigBed GRCh38 released ENCFF687REM bed narrowPeak optimal idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF274GXU, ENCFF419RSJ, ENCFF632EGM, ENCFF999AGC 123403 ENCODE Processing Pipeline 6144eb4e5c413d5305b5471124723826 https://www.encodeproject.org/files/ENCFF687REM/@@download/ENCFF687REM.bed.gz GRCh38 released ENCFF632EGM bed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF023VUT, ENCFF426RDP 6138069 ENCODE Processing Pipeline 34028a99ed95abafffcbf3b9e495684a https://www.encodeproject.org/files/ENCFF632EGM/@@download/ENCFF632EGM.bed.gz GRCh38 released ENCFF692BTN bigBed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF999AGC 13270196 ENCODE Processing Pipeline b772ceee3f925d8ba091daa2796ce4db https://www.encodeproject.org/files/ENCFF692BTN/@@download/ENCFF692BTN.bigBed GRCh38 released ENCFF999AGC bed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF023VUT, ENCFF291AFY, ENCFF426RDP, ENCFF442WFR 7128490 ENCODE Processing Pipeline 58f457d312d6e9542352d15ab1b1a514 https://www.encodeproject.org/files/ENCFF999AGC/@@download/ENCFF999AGC.bed.gz GRCh38 released ENCFF784TPH bigBed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF632EGM 11167859 ENCODE Processing Pipeline 5f66044d93004edf32e99addae060644 https://www.encodeproject.org/files/ENCFF784TPH/@@download/ENCFF784TPH.bigBed GRCh38 released ENCFF293PUF bed narrowPeak conservative idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF274GXU, ENCFF419RSJ, ENCFF632EGM, ENCFF999AGC 66551 ENCODE Processing Pipeline 5b162f478ab1db5426d8281b7dd3c36e https://www.encodeproject.org/files/ENCFF293PUF/@@download/ENCFF293PUF.bed.gz GRCh38 released ENCFF396YWX bigBed narrowPeak conservative idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF293PUF 181277 ENCODE Processing Pipeline c9841f28636819c59cc020040a289e05 https://www.encodeproject.org/files/ENCFF396YWX/@@download/ENCFF396YWX.bigBed GRCh38 released ENCFF325SBK bigBed narrowPeak optimal idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF687REM 318583 ENCODE Processing Pipeline 4441cce7021dd1c3285c757539f4c960 https://www.encodeproject.org/files/ENCFF325SBK/@@download/ENCFF325SBK.bigBed GRCh38 released ENCFF271ILN bigWig fold change over control ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF049MPQ, ENCFF404GUE 1068599145 ENCODE Processing Pipeline ce2622ce229d7d64be33b693fd543dc6 https://www.encodeproject.org/files/ENCFF271ILN/@@download/ENCFF271ILN.bigWig hg19 released ENCFF090BGM bigWig signal p-value ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF049MPQ, ENCFF404GUE, ENCFF583FAG, ENCFF736VZV 1693293919 ENCODE Processing Pipeline fd33f5ac2949135bdd066a9499dc32da https://www.encodeproject.org/files/ENCFF090BGM/@@download/ENCFF090BGM.bigWig hg19 released ENCFF810EYC bigWig signal p-value ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF049MPQ, ENCFF404GUE 890032803 ENCODE Processing Pipeline 374f54e8e5678d435a801231aa7858b2 https://www.encodeproject.org/files/ENCFF810EYC/@@download/ENCFF810EYC.bigWig hg19 released ENCFF057OFG bigWig fold change over control ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF583FAG, ENCFF736VZV 1120252407 ENCODE Processing Pipeline e907ca1f04594ffd02450ae7636d9045 https://www.encodeproject.org/files/ENCFF057OFG/@@download/ENCFF057OFG.bigWig hg19 released ENCFF888WGK bed narrowPeak conservative idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF001TDO, ENCFF013VWS, ENCFF216ONL, ENCFF387UKV 62299 ENCODE Processing Pipeline d9d913262a1a510e5a2e11ddd06cdf4f https://www.encodeproject.org/files/ENCFF888WGK/@@download/ENCFF888WGK.bed.gz hg19 released ENCFF741EZG bigBed narrowPeak conservative idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF888WGK 172090 ENCODE Processing Pipeline d403219d8364a95b4a2d8e317e517f5f https://www.encodeproject.org/files/ENCFF741EZG/@@download/ENCFF741EZG.bigBed hg19 released ENCFF203UQW bigWig signal p-value ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF583FAG, ENCFF736VZV 1225205230 ENCODE Processing Pipeline 0b1edddb125f0e0bad14787a16d2c4f1 https://www.encodeproject.org/files/ENCFF203UQW/@@download/ENCFF203UQW.bigWig hg19 released ENCFF773XHL bigWig fold change over control ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF049MPQ, ENCFF404GUE, ENCFF583FAG, ENCFF736VZV 2017680529 ENCODE Processing Pipeline 025ea8a602b69fe60221a887511b29a8 https://www.encodeproject.org/files/ENCFF773XHL/@@download/ENCFF773XHL.bigWig hg19 released ENCFF216ONL bed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF049MPQ, ENCFF404GUE 6129981 ENCODE Processing Pipeline 0b21eed1a1050e474d67c415693d7f10 https://www.encodeproject.org/files/ENCFF216ONL/@@download/ENCFF216ONL.bed.gz hg19 released ENCFF013VWS bed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF583FAG, ENCFF736VZV 6132240 ENCODE Processing Pipeline 850c3997d6e221b91c52abe3f47a1f8a https://www.encodeproject.org/files/ENCFF013VWS/@@download/ENCFF013VWS.bed.gz hg19 released ENCFF353QLW bed narrowPeak optimal idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF001TDO, ENCFF013VWS, ENCFF216ONL, ENCFF387UKV 117342 ENCODE Processing Pipeline fa969ad37ed6d708c5126ca4cbe28e79 https://www.encodeproject.org/files/ENCFF353QLW/@@download/ENCFF353QLW.bed.gz hg19 released ENCFF387UKV bed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF049MPQ, ENCFF404GUE, ENCFF583FAG, ENCFF736VZV 7115307 ENCODE Processing Pipeline 9bcb51c844553f740a453ec67cfa547a https://www.encodeproject.org/files/ENCFF387UKV/@@download/ENCFF387UKV.bed.gz hg19 released ENCFF782DXW bigBed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 ENCFF216ONL 11157827 ENCODE Processing Pipeline bf79278a8ac76dbba3ac0a7039ec2b85 https://www.encodeproject.org/files/ENCFF782DXW/@@download/ENCFF782DXW.bigBed hg19 released ENCFF042UIV bigBed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 ENCFF013VWS 11148266 ENCODE Processing Pipeline 78413e68bd2c8b60625a4abadb20312c https://www.encodeproject.org/files/ENCFF042UIV/@@download/ENCFF042UIV.bigBed hg19 released ENCFF127XZT bigBed narrowPeak peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF387UKV 13254467 ENCODE Processing Pipeline b984421e6769993639e5345b95ef960c https://www.encodeproject.org/files/ENCFF127XZT/@@download/ENCFF127XZT.bigBed hg19 released ENCFF240MJB bigBed narrowPeak optimal idr thresholded peaks ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF353QLW 257722 ENCODE Processing Pipeline 634c9841a02834f98fb5c61d19d7bee3 https://www.encodeproject.org/files/ENCFF240MJB/@@download/ENCFF240MJB.bigBed hg19 released ENCFF636YGN bam unfiltered alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 100 ENCFF149QCK, ENCFF191MNL, ENCFF807MUK 9256280094 ENCODE Processing Pipeline 42c83006c21d350727c1a63549a563c3 https://www.encodeproject.org/files/ENCFF636YGN/@@download/ENCFF636YGN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF248QZS bam unfiltered alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF082BKZ, ENCFF126QCL, ENCFF807MUK 4515575237 ENCODE Processing Pipeline b443de878edcb30085f17c27b79ed5a1 https://www.encodeproject.org/files/ENCFF248QZS/@@download/ENCFF248QZS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF082BKZ fastq reads ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF126QCL 2069280454 Michael Snyder, Stanford 3fcbc5d07d95b00f01cb4d631daf6434 SRA:SRR5111484 https://www.encodeproject.org/files/ENCFF082BKZ/@@download/ENCFF082BKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF191MNL fastq reads ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 1 100 paired-ended 2 ENCFF149QCK 4476664020 Michael Snyder, Stanford 866e5a3a8506c57b8e4b2b200ca00600 SRA:SRR5111483 https://www.encodeproject.org/files/ENCFF191MNL/@@download/ENCFF191MNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF149QCK fastq reads ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 1 100 paired-ended 1 ENCFF191MNL 4488167173 Michael Snyder, Stanford 2cb873d9b230daed295417e4afcfcb43 SRA:SRR5111483 https://www.encodeproject.org/files/ENCFF149QCK/@@download/ENCFF149QCK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF126QCL fastq reads ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF082BKZ 2018335243 Michael Snyder, Stanford 26e5fd25d7f27c505bf7c0d71cdf2b35 SRA:SRR5111484 https://www.encodeproject.org/files/ENCFF126QCL/@@download/ENCFF126QCL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF837GFI bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF082BKZ, ENCFF126QCL, ENCFF807MUK 3884718671 ENCODE Processing Pipeline 65f9356524b57e956927d531eb3f09bf https://www.encodeproject.org/files/ENCFF837GFI/@@download/ENCFF837GFI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF239MAH bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 100 ENCFF149QCK, ENCFF191MNL, ENCFF807MUK 7365242455 ENCODE Processing Pipeline 45a382044b26c1005e702a99713d77fb https://www.encodeproject.org/files/ENCFF239MAH/@@download/ENCFF239MAH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF759BFQ bigWig signal p-value ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF049MPQ, ENCFF239MAH, ENCFF583FAG 1895296007 ENCODE Processing Pipeline 201e6048149914ec3b7aa17a410b8d3e https://www.encodeproject.org/files/ENCFF759BFQ/@@download/ENCFF759BFQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF235DUI bigWig fold change over control ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF049MPQ, ENCFF239MAH, ENCFF583FAG 1862465559 ENCODE Processing Pipeline b8396577b5015e582e7cb2e9b466af1e https://www.encodeproject.org/files/ENCFF235DUI/@@download/ENCFF235DUI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF220AIH bam unfiltered alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF082BKZ, ENCFF126QCL, ENCFF643CGH 4523950457 ENCODE Processing Pipeline 2a1f7b13322cdb4fe6c73bd1cb804459 https://www.encodeproject.org/files/ENCFF220AIH/@@download/ENCFF220AIH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF365DEP bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF082BKZ, ENCFF126QCL, ENCFF643CGH 3888210921 ENCODE Processing Pipeline f7c8f4fc82f5f2d04983da3d1247730e https://www.encodeproject.org/files/ENCFF365DEP/@@download/ENCFF365DEP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF282NSV bam unfiltered alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 100 ENCFF149QCK, ENCFF191MNL, ENCFF643CGH 9265555608 ENCODE Processing Pipeline d10d83157ae59ee64c493d20fc196c11 https://www.encodeproject.org/files/ENCFF282NSV/@@download/ENCFF282NSV.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF281AZD bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 100 ENCFF149QCK, ENCFF191MNL, ENCFF643CGH 7366352344 ENCODE Processing Pipeline a27cb4f3a9f397438a504942fb900b9b https://www.encodeproject.org/files/ENCFF281AZD/@@download/ENCFF281AZD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF564GUW bigWig signal p-value ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF365DEP, ENCFF426RDP 1111332131 ENCODE Processing Pipeline da2812a42252beaf322a66297d248b0b https://www.encodeproject.org/files/ENCFF564GUW/@@download/ENCFF564GUW.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF067UOC bigWig signal p-value ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF281AZD, ENCFF291AFY, ENCFF426RDP 1947067310 ENCODE Processing Pipeline d041e5cd94e5fc1097b7f33f85dc442a https://www.encodeproject.org/files/ENCFF067UOC/@@download/ENCFF067UOC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF688KNO bigWig signal p-value ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF281AZD, ENCFF291AFY, ENCFF365DEP, ENCFF426RDP 2241160632 ENCODE Processing Pipeline 285718b1ff0c3247a9a72689ce38f6f6 https://www.encodeproject.org/files/ENCFF688KNO/@@download/ENCFF688KNO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF897TSC bigWig fold change over control ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF365DEP, ENCFF426RDP 1082995444 ENCODE Processing Pipeline 06b67e4b364bb8410d181b8be8d21fc7 https://www.encodeproject.org/files/ENCFF897TSC/@@download/ENCFF897TSC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF530NNP bigWig fold change over control ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF281AZD, ENCFF291AFY, ENCFF426RDP 1865037271 ENCODE Processing Pipeline dd198d70020cd7b37084a03a1d7fafbd https://www.encodeproject.org/files/ENCFF530NNP/@@download/ENCFF530NNP.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF204LFY bigWig fold change over control ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF281AZD, ENCFF291AFY, ENCFF365DEP, ENCFF426RDP 2278305334 ENCODE Processing Pipeline 47bc9fcde582c22699721c61b25a7a82 https://www.encodeproject.org/files/ENCFF204LFY/@@download/ENCFF204LFY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF418VOB bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF281AZD, ENCFF291AFY, ENCFF426RDP 6797073 ENCODE Processing Pipeline 866432cee9defcf2a58834c73e50db0f https://www.encodeproject.org/files/ENCFF418VOB/@@download/ENCFF418VOB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF217HCU bigBed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF418VOB 13373153 ENCODE Processing Pipeline f4e576fccc9c6f9f7a63ce9cb9e6ba8f https://www.encodeproject.org/files/ENCFF217HCU/@@download/ENCFF217HCU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF953ENJ bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF365DEP, ENCFF426RDP 6020466 ENCODE Processing Pipeline 2f45d5ba5ccaa198bacc0319ccd5e804 https://www.encodeproject.org/files/ENCFF953ENJ/@@download/ENCFF953ENJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF010SNL bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF281AZD, ENCFF291AFY, ENCFF365DEP, ENCFF426RDP 7220900 ENCODE Processing Pipeline 454b2eec5419aa6738e5ac7e5f6af8b9 https://www.encodeproject.org/files/ENCFF010SNL/@@download/ENCFF010SNL.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF531CTU bed narrowPeak conservative idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF010SNL, ENCFF418VOB, ENCFF419RSJ, ENCFF953ENJ 162007 ENCODE Processing Pipeline 8465d7c95d5d3026dac86057e4ce3d36 https://www.encodeproject.org/files/ENCFF531CTU/@@download/ENCFF531CTU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF288FDA bigBed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF953ENJ 11243959 ENCODE Processing Pipeline 41ca601579e94e1a278f26eb74529848 https://www.encodeproject.org/files/ENCFF288FDA/@@download/ENCFF288FDA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF652NWJ bigBed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF010SNL 13211950 ENCODE Processing Pipeline 53ca3df344c7c266d27c837a7b18a4ad https://www.encodeproject.org/files/ENCFF652NWJ/@@download/ENCFF652NWJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF730UAD bed narrowPeak optimal idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF010SNL, ENCFF418VOB, ENCFF419RSJ, ENCFF953ENJ 218900 ENCODE Processing Pipeline 6a89be8e431255b02116514ee055156a https://www.encodeproject.org/files/ENCFF730UAD/@@download/ENCFF730UAD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF058XQC bigBed narrowPeak optimal idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF730UAD 572684 ENCODE Processing Pipeline 62bc34ea14ddaba47d0a4c854b7c444c https://www.encodeproject.org/files/ENCFF058XQC/@@download/ENCFF058XQC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF416HJL bigBed narrowPeak conservative idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF531CTU 450812 ENCODE Processing Pipeline 96caaaca86ef7caf2b535573a252f304 https://www.encodeproject.org/files/ENCFF416HJL/@@download/ENCFF416HJL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF980BXM bigWig fold change over control ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF837GFI 1086639664 ENCODE Processing Pipeline 5bc94466818dfa115980ada9b551093c https://www.encodeproject.org/files/ENCFF980BXM/@@download/ENCFF980BXM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF766NVA bigWig signal p-value ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF049MPQ, ENCFF239MAH, ENCFF583FAG, ENCFF837GFI 2219547518 ENCODE Processing Pipeline 77b0a97e7575f37b03edcf24470a4e54 https://www.encodeproject.org/files/ENCFF766NVA/@@download/ENCFF766NVA.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF148LGD bigWig signal p-value ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF837GFI 1068431385 ENCODE Processing Pipeline fd0b77f9ea0a6932f99f97f63c73460e https://www.encodeproject.org/files/ENCFF148LGD/@@download/ENCFF148LGD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF715GRP bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF837GFI 6019778 ENCODE Processing Pipeline 4caedbe93addd28abae558017b0da657 https://www.encodeproject.org/files/ENCFF715GRP/@@download/ENCFF715GRP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF902LLC bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF049MPQ, ENCFF239MAH, ENCFF583FAG, ENCFF837GFI 7199840 ENCODE Processing Pipeline 32d4d507261d519007c4ed8cc927c3c8 https://www.encodeproject.org/files/ENCFF902LLC/@@download/ENCFF902LLC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF682NQT bigBed narrowPeak conservative idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF912AKH 445119 ENCODE Processing Pipeline 3ec691707991d20457e87d03d65ac0cc https://www.encodeproject.org/files/ENCFF682NQT/@@download/ENCFF682NQT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF171XBN bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF049MPQ, ENCFF239MAH, ENCFF583FAG 6786556 ENCODE Processing Pipeline 5ecd047f7da83da05b8fc605e29e7212 https://www.encodeproject.org/files/ENCFF171XBN/@@download/ENCFF171XBN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF502YMI bigBed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF715GRP 11229204 ENCODE Processing Pipeline 37f94fa11d27c3175bb0e725c1ad1972 https://www.encodeproject.org/files/ENCFF502YMI/@@download/ENCFF502YMI.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF912AKH bed narrowPeak conservative idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF001TDO, ENCFF171XBN, ENCFF715GRP, ENCFF902LLC 159631 ENCODE Processing Pipeline b5d694e0345d1e9ddaef0f34bda780d3 https://www.encodeproject.org/files/ENCFF912AKH/@@download/ENCFF912AKH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF042YID bigWig fold change over control ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF049MPQ, ENCFF239MAH, ENCFF583FAG, ENCFF837GFI 2255163128 ENCODE Processing Pipeline 4c30e040fafe0a85f18b843d54ec50c6 https://www.encodeproject.org/files/ENCFF042YID/@@download/ENCFF042YID.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF241NID bigBed narrowPeak optimal idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF362XAG 572371 ENCODE Processing Pipeline 1a9b434e710069cf3f023f6c3d795fd5 https://www.encodeproject.org/files/ENCFF241NID/@@download/ENCFF241NID.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF251MFU bigBed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 ENCFF171XBN 13349897 ENCODE Processing Pipeline 618fd39fd41674b414ff3a2e6e9c17f9 https://www.encodeproject.org/files/ENCFF251MFU/@@download/ENCFF251MFU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF980TNK bigBed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF902LLC 13198309 ENCODE Processing Pipeline 275b99721be3d3d8d8ec60078d0604c9 https://www.encodeproject.org/files/ENCFF980TNK/@@download/ENCFF980TNK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF362XAG bed narrowPeak optimal idr thresholded peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1, 3 ENCFF001TDO, ENCFF171XBN, ENCFF715GRP, ENCFF902LLC 219139 ENCODE Processing Pipeline e075079762d0dffe01cc1edb2a6c3d5e https://www.encodeproject.org/files/ENCFF362XAG/@@download/ENCFF362XAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF817WMW bam unfiltered alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 100 ENCFF213VGJ, ENCFF424RZZ, ENCFF807MUK 6062017019 ENCODE Processing Pipeline b9c7db1143201a73206654f291a6b42c https://www.encodeproject.org/files/ENCFF817WMW/@@download/ENCFF817WMW.bam hg19 released mild to moderate bottlenecking ENCFF647JST bam unfiltered alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF352BSY, ENCFF354AKN, ENCFF807MUK 7838771446 ENCODE Processing Pipeline 68f1c345997fca4df9e7411ca056b8ad https://www.encodeproject.org/files/ENCFF647JST/@@download/ENCFF647JST.bam hg19 released mild to moderate bottlenecking ENCFF352BSY fastq reads ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 2 ENCFF354AKN 3773557142 Michael Snyder, Stanford f31fe3b1639933e03785d65ad7a66799 SRA:SRR5111045 https://www.encodeproject.org/files/ENCFF352BSY/@@download/ENCFF352BSY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released mild to moderate bottlenecking ENCFF354AKN fastq reads ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 1 100 paired-ended 1 ENCFF352BSY 3717344512 Michael Snyder, Stanford 904feaec92a120c8b201ec4fef3c9edb SRA:SRR5111045 https://www.encodeproject.org/files/ENCFF354AKN/@@download/ENCFF354AKN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released mild to moderate bottlenecking ENCFF424RZZ fastq reads ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 1 100 paired-ended 1 ENCFF213VGJ 2838002046 Michael Snyder, Stanford 52cdbc1e1d0c839754deb39b2fc19e3e SRA:SRR5111046 https://www.encodeproject.org/files/ENCFF424RZZ/@@download/ENCFF424RZZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released mild to moderate bottlenecking ENCFF213VGJ fastq reads ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 1 100 paired-ended 2 ENCFF424RZZ 2858780910 Michael Snyder, Stanford 004f9a4344880d79d49094dda5bc1e3f SRA:SRR5111046 https://www.encodeproject.org/files/ENCFF213VGJ/@@download/ENCFF213VGJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released mild to moderate bottlenecking ENCFF902IUI bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF352BSY, ENCFF354AKN, ENCFF807MUK 6516760709 ENCODE Processing Pipeline c2f78a2f2b6e4eb7c01feb62ffb65a48 https://www.encodeproject.org/files/ENCFF902IUI/@@download/ENCFF902IUI.bam hg19 released mild to moderate bottlenecking ENCFF041GWT bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 100 ENCFF213VGJ, ENCFF424RZZ, ENCFF807MUK 5275540644 ENCODE Processing Pipeline 1b147679199ca78f944b62f6356d696e https://www.encodeproject.org/files/ENCFF041GWT/@@download/ENCFF041GWT.bam hg19 released mild to moderate bottlenecking ENCFF864CDR bigWig signal p-value ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF041GWT, ENCFF049MPQ 960767444 ENCODE Processing Pipeline 13fc126b007fce9b6699e5aab27c1b83 https://www.encodeproject.org/files/ENCFF864CDR/@@download/ENCFF864CDR.bigWig hg19 released mild to moderate bottlenecking ENCFF066MXQ bigWig signal p-value ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 1353021386 ENCODE Processing Pipeline de5c3e86f5c4c8acd65a5b93e531fed1 https://www.encodeproject.org/files/ENCFF066MXQ/@@download/ENCFF066MXQ.bigWig hg19 released mild to moderate bottlenecking ENCFF824ZWU bigWig signal p-value ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF041GWT, ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 2175398902 ENCODE Processing Pipeline 6a3c722e9ef6c39bdd2cd7b8783645ba https://www.encodeproject.org/files/ENCFF824ZWU/@@download/ENCFF824ZWU.bigWig hg19 released mild to moderate bottlenecking ENCFF027XWM bigWig fold change over control ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 1766776589 ENCODE Processing Pipeline d536882615efc035bfa92a317b0ada4e https://www.encodeproject.org/files/ENCFF027XWM/@@download/ENCFF027XWM.bigWig hg19 released mild to moderate bottlenecking ENCFF984NIY bigWig fold change over control ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF041GWT, ENCFF049MPQ 1244797441 ENCODE Processing Pipeline 12b57761bc61df50871f219c069fa7ec https://www.encodeproject.org/files/ENCFF984NIY/@@download/ENCFF984NIY.bigWig hg19 released mild to moderate bottlenecking ENCFF697OGK bigWig fold change over control ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF041GWT, ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 2246538569 ENCODE Processing Pipeline 434f4cf33a30ec37bca03641fb47bbcd https://www.encodeproject.org/files/ENCFF697OGK/@@download/ENCFF697OGK.bigWig hg19 released mild to moderate bottlenecking ENCFF640CQY bam unfiltered alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 100 ENCFF213VGJ, ENCFF424RZZ, ENCFF643CGH 6071895914 ENCODE Processing Pipeline b10fc6026f26c57227b91b8d11a5622d https://www.encodeproject.org/files/ENCFF640CQY/@@download/ENCFF640CQY.bam GRCh38 released mild to moderate bottlenecking ENCFF947CLR bam unfiltered alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF352BSY, ENCFF354AKN, ENCFF643CGH 7848045231 ENCODE Processing Pipeline 2164df0525c8913c7fff7eba2ddbee76 https://www.encodeproject.org/files/ENCFF947CLR/@@download/ENCFF947CLR.bam GRCh38 released mild to moderate bottlenecking ENCFF803ZFE bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 100 ENCFF213VGJ, ENCFF424RZZ, ENCFF643CGH 5278565887 ENCODE Processing Pipeline 398c3331574d5c37ab2f195dd63b8d53 https://www.encodeproject.org/files/ENCFF803ZFE/@@download/ENCFF803ZFE.bam GRCh38 released mild to moderate bottlenecking ENCFF299JYS bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF352BSY, ENCFF354AKN, ENCFF643CGH 6521678934 ENCODE Processing Pipeline 62c4b0b5b84403b3472bc4d954202599 https://www.encodeproject.org/files/ENCFF299JYS/@@download/ENCFF299JYS.bam GRCh38 released mild to moderate bottlenecking ENCFF626DJN bigWig signal p-value ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF291AFY, ENCFF299JYS, ENCFF426RDP 1544071082 ENCODE Processing Pipeline d87604b8ec4b85ca43405e8337fe61f3 https://www.encodeproject.org/files/ENCFF626DJN/@@download/ENCFF626DJN.bigWig GRCh38 released mild to moderate bottlenecking ENCFF820QUQ bigWig signal p-value ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF291AFY, ENCFF803ZFE 1121140544 ENCODE Processing Pipeline b7fec2c7c2fbf116c412751a1009725d https://www.encodeproject.org/files/ENCFF820QUQ/@@download/ENCFF820QUQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF838WCD bigWig signal p-value ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF291AFY, ENCFF299JYS, ENCFF426RDP, ENCFF803ZFE 2158351182 ENCODE Processing Pipeline 256e8f7bb4120ab15a6d1f74f5433b93 https://www.encodeproject.org/files/ENCFF838WCD/@@download/ENCFF838WCD.bigWig GRCh38 released mild to moderate bottlenecking ENCFF449YHQ bigWig fold change over control ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF291AFY, ENCFF299JYS, ENCFF426RDP 1773463019 ENCODE Processing Pipeline 5e50c77cd1fbabda28b5444c5dfa764c https://www.encodeproject.org/files/ENCFF449YHQ/@@download/ENCFF449YHQ.bigWig GRCh38 released mild to moderate bottlenecking ENCFF141PCT bigWig fold change over control ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF291AFY, ENCFF803ZFE 1249345440 ENCODE Processing Pipeline 3b9dc9475cc0c9d1365b9dcbac7726dd https://www.encodeproject.org/files/ENCFF141PCT/@@download/ENCFF141PCT.bigWig GRCh38 released mild to moderate bottlenecking ENCFF534CCF bigWig fold change over control ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF291AFY, ENCFF299JYS, ENCFF426RDP, ENCFF803ZFE 2230524597 ENCODE Processing Pipeline e9e8cdbd4b31e9b8bcf94b4ce90de6f4 https://www.encodeproject.org/files/ENCFF534CCF/@@download/ENCFF534CCF.bigWig GRCh38 released mild to moderate bottlenecking ENCFF273JPK bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF291AFY, ENCFF299JYS, ENCFF426RDP 7023019 ENCODE Processing Pipeline dce44fc484c0fcb60da323ffc4c29164 https://www.encodeproject.org/files/ENCFF273JPK/@@download/ENCFF273JPK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF729BKQ bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF291AFY, ENCFF803ZFE 6630370 ENCODE Processing Pipeline 186c5b9ca1a20d9a92f27691a8dc6426 https://www.encodeproject.org/files/ENCFF729BKQ/@@download/ENCFF729BKQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF633PLL bigBed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF273JPK 13542075 ENCODE Processing Pipeline 477c5a89dbf34fe5572346cbcb02ca4f https://www.encodeproject.org/files/ENCFF633PLL/@@download/ENCFF633PLL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF914AAM bigBed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF729BKQ 13366696 ENCODE Processing Pipeline 92ca843471218d8fc46c727114d7408f https://www.encodeproject.org/files/ENCFF914AAM/@@download/ENCFF914AAM.bigBed GRCh38 released mild to moderate bottlenecking ENCFF510UZK bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF291AFY, ENCFF299JYS, ENCFF426RDP, ENCFF803ZFE 7197438 ENCODE Processing Pipeline 71ce3bd9cb9f2026d1708c8463307252 https://www.encodeproject.org/files/ENCFF510UZK/@@download/ENCFF510UZK.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF656QZI bigBed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF510UZK 13472000 ENCODE Processing Pipeline 2f86f342957e54522bfbcf51b9a868e2 https://www.encodeproject.org/files/ENCFF656QZI/@@download/ENCFF656QZI.bigBed GRCh38 released mild to moderate bottlenecking ENCFF150PTQ bed narrowPeak optimal idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF273JPK, ENCFF419RSJ, ENCFF510UZK, ENCFF729BKQ 465695 ENCODE Processing Pipeline 6b60727f9ac6a266a57902511192d707 https://www.encodeproject.org/files/ENCFF150PTQ/@@download/ENCFF150PTQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF981UFU bigBed narrowPeak optimal idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF150PTQ 840442 ENCODE Processing Pipeline 5b239970e78ff771cbdb8494cbdf8e2a https://www.encodeproject.org/files/ENCFF981UFU/@@download/ENCFF981UFU.bigBed GRCh38 released mild to moderate bottlenecking ENCFF741KWD bigBed narrowPeak conservative idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF618FOL 767151 ENCODE Processing Pipeline c809cff1e4fddc7130143cf395d2c242 https://www.encodeproject.org/files/ENCFF741KWD/@@download/ENCFF741KWD.bigBed GRCh38 released mild to moderate bottlenecking ENCFF618FOL bed narrowPeak conservative idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF273JPK, ENCFF419RSJ, ENCFF510UZK, ENCFF729BKQ 422678 ENCODE Processing Pipeline 524cb2048a59496d7a37256ba80d460c https://www.encodeproject.org/files/ENCFF618FOL/@@download/ENCFF618FOL.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF128GZH bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF041GWT, ENCFF049MPQ 6633512 ENCODE Processing Pipeline 962140678b29ddca6c90bd8453630bc6 https://www.encodeproject.org/files/ENCFF128GZH/@@download/ENCFF128GZH.bed.gz hg19 released mild to moderate bottlenecking ENCFF588ODL bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF041GWT, ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 7241063 ENCODE Processing Pipeline 138eaa63dc16f6968f28f6e891a18b6d https://www.encodeproject.org/files/ENCFF588ODL/@@download/ENCFF588ODL.bed.gz hg19 released mild to moderate bottlenecking ENCFF536VZE bigBed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF367XOV 13514302 ENCODE Processing Pipeline 89ef4002622026531dd7dc0cf5c7e69f https://www.encodeproject.org/files/ENCFF536VZE/@@download/ENCFF536VZE.bigBed hg19 released mild to moderate bottlenecking ENCFF396QVR bed narrowPeak conservative idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF001TDO, ENCFF128GZH, ENCFF367XOV, ENCFF588ODL 437732 ENCODE Processing Pipeline c35743539253f3df613af75c746dd512 https://www.encodeproject.org/files/ENCFF396QVR/@@download/ENCFF396QVR.bed.gz hg19 released mild to moderate bottlenecking ENCFF086XNX bigBed narrowPeak optimal idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF150TBK 864499 ENCODE Processing Pipeline 860ee25aa8e5ae70b510ee46f673d238 https://www.encodeproject.org/files/ENCFF086XNX/@@download/ENCFF086XNX.bigBed hg19 released mild to moderate bottlenecking ENCFF367XOV bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 7008420 ENCODE Processing Pipeline e2ce9fc675b4c8b24e51ac51d5066ae0 https://www.encodeproject.org/files/ENCFF367XOV/@@download/ENCFF367XOV.bed.gz hg19 released mild to moderate bottlenecking ENCFF727YVK bigBed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 ENCFF128GZH 13356294 ENCODE Processing Pipeline e103b20327524f0292a59fddff0047cc https://www.encodeproject.org/files/ENCFF727YVK/@@download/ENCFF727YVK.bigBed hg19 released mild to moderate bottlenecking ENCFF848GZF bigBed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF588ODL 13525668 ENCODE Processing Pipeline 99b5311114dad6791855679c250c8044 https://www.encodeproject.org/files/ENCFF848GZF/@@download/ENCFF848GZF.bigBed hg19 released mild to moderate bottlenecking ENCFF862KLF bigBed narrowPeak conservative idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF396QVR 997899 ENCODE Processing Pipeline 87a727bf6522717268374bcf49c346bf https://www.encodeproject.org/files/ENCFF862KLF/@@download/ENCFF862KLF.bigBed hg19 released mild to moderate bottlenecking ENCFF150TBK bed narrowPeak optimal idr thresholded peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1, 3 ENCFF001TDO, ENCFF128GZH, ENCFF367XOV, ENCFF588ODL 483003 ENCODE Processing Pipeline 3b7244abb3c710105e4641632bb37970 https://www.encodeproject.org/files/ENCFF150TBK/@@download/ENCFF150TBK.bed.gz hg19 released mild to moderate bottlenecking ENCFF039DVL fastq reads ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 1 ENCFF103YIS 4004996890 Michael Snyder, Stanford 9c840d6763875a357ccb27068c2d920e SRA:SRR6212667 https://www.encodeproject.org/files/ENCFF039DVL/@@download/ENCFF039DVL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF064WNX fastq reads ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 1 ENCFF753IGR 3956828063 Michael Snyder, Stanford ecfae072270ed11b0731e2598b73dae0 SRA:SRR6212666 https://www.encodeproject.org/files/ENCFF064WNX/@@download/ENCFF064WNX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF103YIS fastq reads ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 1 100 paired-ended 2 ENCFF039DVL 4067711589 Michael Snyder, Stanford 3b9cfe22f07b6f4c780d3818226e4b60 SRA:SRR6212667 https://www.encodeproject.org/files/ENCFF103YIS/@@download/ENCFF103YIS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF753IGR fastq reads ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 1 100 paired-ended 2 ENCFF064WNX 4005921285 Michael Snyder, Stanford e62b0ab1cf944e889b83cacef99b76eb SRA:SRR6212666 https://www.encodeproject.org/files/ENCFF753IGR/@@download/ENCFF753IGR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF346YNN bam unfiltered alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF039DVL, ENCFF103YIS, ENCFF807MUK 7949457711 ENCODE Processing Pipeline 7f66d8ffb86d87f85d97503dd50a87e8 https://www.encodeproject.org/files/ENCFF346YNN/@@download/ENCFF346YNN.bam hg19 released ENCFF989MGN bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF039DVL, ENCFF103YIS, ENCFF643CGH 6595650339 ENCODE Processing Pipeline 8ecbfcb82febc2c8d0c553c5e8a1ab78 https://www.encodeproject.org/files/ENCFF989MGN/@@download/ENCFF989MGN.bam GRCh38 released ENCFF563MKX bam unfiltered alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF064WNX, ENCFF753IGR, ENCFF807MUK 7869446740 ENCODE Processing Pipeline 533fbb5dc5c3a639382088738598072d https://www.encodeproject.org/files/ENCFF563MKX/@@download/ENCFF563MKX.bam hg19 released ENCFF967SQJ bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF064WNX, ENCFF643CGH, ENCFF753IGR 6611625912 ENCODE Processing Pipeline 2940efba1c87409fda7d5478d3632558 https://www.encodeproject.org/files/ENCFF967SQJ/@@download/ENCFF967SQJ.bam GRCh38 released ENCFF029BWR bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF064WNX, ENCFF753IGR, ENCFF807MUK 6599334442 ENCODE Processing Pipeline f8d6ec8621d6a0486ae81fba0c702cfd https://www.encodeproject.org/files/ENCFF029BWR/@@download/ENCFF029BWR.bam hg19 released ENCFF372IXY bam unfiltered alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF039DVL, ENCFF103YIS, ENCFF643CGH 7965151136 ENCODE Processing Pipeline a0253d5e3677c7394406178b607af8d6 https://www.encodeproject.org/files/ENCFF372IXY/@@download/ENCFF372IXY.bam GRCh38 released ENCFF806ZMX bam unfiltered alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF064WNX, ENCFF643CGH, ENCFF753IGR 7885374146 ENCODE Processing Pipeline ff5cd681f9109e34168432cb561788a1 https://www.encodeproject.org/files/ENCFF806ZMX/@@download/ENCFF806ZMX.bam GRCh38 released ENCFF244LMD bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF039DVL, ENCFF103YIS, ENCFF807MUK 6583553272 ENCODE Processing Pipeline e0b66aed38350c33b0f21da5fe0713d6 https://www.encodeproject.org/files/ENCFF244LMD/@@download/ENCFF244LMD.bam hg19 released ENCFF895EPY bigWig signal p-value ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 1432147623 ENCODE Processing Pipeline 76f1af9bd5125884c3d909d78c40869a https://www.encodeproject.org/files/ENCFF895EPY/@@download/ENCFF895EPY.bigWig hg19 released ENCFF793BSR bigWig fold change over control ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 1823630683 ENCODE Processing Pipeline 89a33c1bfd6a50648984bed3d7e15e19 https://www.encodeproject.org/files/ENCFF793BSR/@@download/ENCFF793BSR.bigWig hg19 released ENCFF853JHC bigWig signal p-value ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF029BWR, ENCFF049MPQ 1440644036 ENCODE Processing Pipeline 37f0ca79a4fbf00a6383822fc2d9a1c2 https://www.encodeproject.org/files/ENCFF853JHC/@@download/ENCFF853JHC.bigWig hg19 released ENCFF057GLV bigBed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF779NYR 11140031 ENCODE Processing Pipeline 45033073d42e33d52434da8b1f113de1 https://www.encodeproject.org/files/ENCFF057GLV/@@download/ENCFF057GLV.bigBed hg19 released ENCFF500FEF bigBed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF609EET 11055838 ENCODE Processing Pipeline 125803d5dabab4d1594a92c4a8afcc2c https://www.encodeproject.org/files/ENCFF500FEF/@@download/ENCFF500FEF.bigBed hg19 released ENCFF055NED bigWig signal p-value ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF029BWR, ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 2258260738 ENCODE Processing Pipeline 83105f4c90f3433b1cc48d4bbdc48ff6 https://www.encodeproject.org/files/ENCFF055NED/@@download/ENCFF055NED.bigWig hg19 released ENCFF609EET bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF029BWR, ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 7162065 ENCODE Processing Pipeline 304e413f960db6b42e3d498413ee32bf https://www.encodeproject.org/files/ENCFF609EET/@@download/ENCFF609EET.bed.gz hg19 released ENCFF195FLW bigWig fold change over control ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF029BWR, ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 2409464037 ENCODE Processing Pipeline f7b385e0f2d1e8fa00147449bf761699 https://www.encodeproject.org/files/ENCFF195FLW/@@download/ENCFF195FLW.bigWig hg19 released ENCFF794UGE bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF029BWR, ENCFF049MPQ 6302812 ENCODE Processing Pipeline 2eecbac37afa9869718ab7bf8dec9b34 https://www.encodeproject.org/files/ENCFF794UGE/@@download/ENCFF794UGE.bed.gz hg19 released ENCFF833JTZ bed narrowPeak conservative idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF609EET, ENCFF779NYR, ENCFF794UGE 56953 ENCODE Processing Pipeline cd89d94cbfc062e7bac17748c5961ad3 https://www.encodeproject.org/files/ENCFF833JTZ/@@download/ENCFF833JTZ.bed.gz hg19 released ENCFF891KAF bigWig fold change over control ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF029BWR, ENCFF049MPQ 1441289846 ENCODE Processing Pipeline 71bc7fd017df889bd71b2041009b8b9c https://www.encodeproject.org/files/ENCFF891KAF/@@download/ENCFF891KAF.bigWig hg19 released ENCFF293MOM bigBed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF794UGE 11151459 ENCODE Processing Pipeline 455b9d4986a26ab31a22fe9dec1b3e55 https://www.encodeproject.org/files/ENCFF293MOM/@@download/ENCFF293MOM.bigBed hg19 released ENCFF839QOL bigBed narrowPeak conservative idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF833JTZ 161246 ENCODE Processing Pipeline 962f2209d15511346dc2a770da2e7965 https://www.encodeproject.org/files/ENCFF839QOL/@@download/ENCFF839QOL.bigBed hg19 released ENCFF779NYR bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 6714629 ENCODE Processing Pipeline 25112968c261bdd39f067c631145dab9 https://www.encodeproject.org/files/ENCFF779NYR/@@download/ENCFF779NYR.bed.gz hg19 released ENCFF902IMW bed narrowPeak optimal idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF001TDO, ENCFF609EET, ENCFF779NYR, ENCFF794UGE 92144 ENCODE Processing Pipeline 45232ad38904dc1dbab3a90de46e8176 https://www.encodeproject.org/files/ENCFF902IMW/@@download/ENCFF902IMW.bed.gz hg19 released ENCFF148QJD bigBed narrowPeak optimal idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF902IMW 216916 ENCODE Processing Pipeline 9715be1b633f6fb83fc01bff1210453a https://www.encodeproject.org/files/ENCFF148QJD/@@download/ENCFF148QJD.bigBed hg19 released ENCFF954GGK bigWig fold change over control ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF989MGN 1827674135 ENCODE Processing Pipeline 01ad9c122d9dae251fb6f73b61b2419d https://www.encodeproject.org/files/ENCFF954GGK/@@download/ENCFF954GGK.bigWig GRCh38 released ENCFF031HSG bigWig fold change over control ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF967SQJ, ENCFF989MGN 2414717796 ENCODE Processing Pipeline 31f0bf9c8a7e366309e03f7d7c59a1d4 https://www.encodeproject.org/files/ENCFF031HSG/@@download/ENCFF031HSG.bigWig GRCh38 released ENCFF694VAC bigBed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF604RTF 11171036 ENCODE Processing Pipeline 05864a0b700a9118f523c454b1f1e8ba https://www.encodeproject.org/files/ENCFF694VAC/@@download/ENCFF694VAC.bigBed GRCh38 released ENCFF346TDL bigWig signal p-value ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF291AFY, ENCFF967SQJ 1438588369 ENCODE Processing Pipeline dc2385368c1fa07371a6200e92fb6ace https://www.encodeproject.org/files/ENCFF346TDL/@@download/ENCFF346TDL.bigWig GRCh38 released ENCFF168SNJ bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF989MGN 6722616 ENCODE Processing Pipeline 85d18eb9ca6304d4ab611a7279745f91 https://www.encodeproject.org/files/ENCFF168SNJ/@@download/ENCFF168SNJ.bed.gz GRCh38 released ENCFF421CDQ bigBed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF168SNJ 11149837 ENCODE Processing Pipeline 1bea72b591555d0ef6872c4dca2779f8 https://www.encodeproject.org/files/ENCFF421CDQ/@@download/ENCFF421CDQ.bigBed GRCh38 released ENCFF038ORQ bigWig signal p-value ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF291AFY, ENCFF426RDP, ENCFF989MGN 1619763846 ENCODE Processing Pipeline 7e308e264a6fae9e72d75279f42c74e6 https://www.encodeproject.org/files/ENCFF038ORQ/@@download/ENCFF038ORQ.bigWig GRCh38 released ENCFF412SER bigWig signal p-value ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF967SQJ, ENCFF989MGN 2257006163 ENCODE Processing Pipeline 41c4db90f5f594086cda572b7bae383d https://www.encodeproject.org/files/ENCFF412SER/@@download/ENCFF412SER.bigWig GRCh38 released ENCFF341WCB bigWig fold change over control ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF291AFY, ENCFF967SQJ 1439221488 ENCODE Processing Pipeline 8f3517fc4b5181797ba3b87e2fb33419 https://www.encodeproject.org/files/ENCFF341WCB/@@download/ENCFF341WCB.bigWig GRCh38 released ENCFF376CPR bigBed narrowPeak conservative idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF184JNY 169996 ENCODE Processing Pipeline 1a6b62992f4b8b08d12b4accc15d8d24 https://www.encodeproject.org/files/ENCFF376CPR/@@download/ENCFF376CPR.bigBed GRCh38 released ENCFF399BNG bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF967SQJ, ENCFF989MGN 7173095 ENCODE Processing Pipeline c44462807b70bf255570ca6171a55d19 https://www.encodeproject.org/files/ENCFF399BNG/@@download/ENCFF399BNG.bed.gz GRCh38 released ENCFF144OPN bed narrowPeak optimal idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF168SNJ, ENCFF399BNG, ENCFF419RSJ, ENCFF604RTF 93758 ENCODE Processing Pipeline da335a6af9243f65010670743c0927d1 https://www.encodeproject.org/files/ENCFF144OPN/@@download/ENCFF144OPN.bed.gz GRCh38 released ENCFF282QPX bigBed narrowPeak optimal idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF144OPN 222898 ENCODE Processing Pipeline 8a4256d628fe0706ea37063f08cfa826 https://www.encodeproject.org/files/ENCFF282QPX/@@download/ENCFF282QPX.bigBed GRCh38 released ENCFF604RTF bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF291AFY, ENCFF967SQJ 6309220 ENCODE Processing Pipeline 91daa466b5d2a2fea7d0d6574ce402a5 https://www.encodeproject.org/files/ENCFF604RTF/@@download/ENCFF604RTF.bed.gz GRCh38 released ENCFF590YWP bigBed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF399BNG 11075009 ENCODE Processing Pipeline 26dbc2026943270eb0dfdbed8eb288f2 https://www.encodeproject.org/files/ENCFF590YWP/@@download/ENCFF590YWP.bigBed GRCh38 released ENCFF184JNY bed narrowPeak conservative idr thresholded peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1, 2 ENCFF168SNJ, ENCFF399BNG, ENCFF419RSJ, ENCFF604RTF 60738 ENCODE Processing Pipeline c9486153968bf46ccab3fdea13d932c0 https://www.encodeproject.org/files/ENCFF184JNY/@@download/ENCFF184JNY.bed.gz GRCh38 released ENCFF796VDT fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 1 101 paired-ended 1 ENCFF054CAA 533235342 Michael Snyder, Stanford b2f1e53899dd1f155cb6019154a96da5 https://www.encodeproject.org/files/ENCFF796VDT/@@download/ENCFF796VDT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF421RRK fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 1 101 paired-ended 1 ENCFF804WQJ 669314042 Michael Snyder, Stanford 0b7b2e4874116243e9db90322ebb4d29 https://www.encodeproject.org/files/ENCFF421RRK/@@download/ENCFF421RRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF804WQJ fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 1 101 paired-ended 2 ENCFF421RRK 680847153 Michael Snyder, Stanford 91bb3092a138ed7542604f44763c79cb https://www.encodeproject.org/files/ENCFF804WQJ/@@download/ENCFF804WQJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF054CAA fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 1 101 paired-ended 2 ENCFF796VDT 545549164 Michael Snyder, Stanford d32948da3f4c88aa75376a9f52416aa4 https://www.encodeproject.org/files/ENCFF054CAA/@@download/ENCFF054CAA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ archived mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF070RBE fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 1 101 paired-ended 1 ENCFF322UTY 2529367410 Michael Snyder, Stanford 4fbc62713d77bead9bf76b7a2f5718a7 SRA:SRR6214018 https://www.encodeproject.org/files/ENCFF070RBE/@@download/ENCFF070RBE.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF322UTY fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 1 101 paired-ended 2 ENCFF070RBE 3114220139 Michael Snyder, Stanford c93e341b3613d7484c516f514e2520f5 SRA:SRR6214018 https://www.encodeproject.org/files/ENCFF322UTY/@@download/ENCFF322UTY.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF327HOL fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 1 101 paired-ended 1 ENCFF489SBU 2167923420 Michael Snyder, Stanford e679af9f3af1597fbe68b5a40f4e03f7 SRA:SRR6214019 https://www.encodeproject.org/files/ENCFF327HOL/@@download/ENCFF327HOL.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF489SBU fastq reads ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 1 101 paired-ended 2 ENCFF327HOL 2666406643 Michael Snyder, Stanford 6e4230a5d48b11b0439bdd77b4d920a7 SRA:SRR6214019 https://www.encodeproject.org/files/ENCFF489SBU/@@download/ENCFF489SBU.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF056XZP bam unfiltered alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 101 ENCFF327HOL, ENCFF489SBU, ENCFF807MUK 4717651762 ENCODE Processing Pipeline 2b9e3dc4642b977e98392b08a8f03e05 https://www.encodeproject.org/files/ENCFF056XZP/@@download/ENCFF056XZP.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF805BMI bam unfiltered alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 101 ENCFF327HOL, ENCFF489SBU, ENCFF643CGH 4721727347 ENCODE Processing Pipeline dd2f48520c72a4fc108a23f1cda56cc8 https://www.encodeproject.org/files/ENCFF805BMI/@@download/ENCFF805BMI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF485IJH bam unfiltered alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF070RBE, ENCFF322UTY, ENCFF643CGH 5540597160 ENCODE Processing Pipeline ac5600b4ebf543a3bf436a3318442fc8 https://www.encodeproject.org/files/ENCFF485IJH/@@download/ENCFF485IJH.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF652ORT bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 101 ENCFF327HOL, ENCFF489SBU, ENCFF807MUK 3153565048 ENCODE Processing Pipeline f748caad54c5351d0a13c0454091ef50 https://www.encodeproject.org/files/ENCFF652ORT/@@download/ENCFF652ORT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF171TVX bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF070RBE, ENCFF322UTY, ENCFF807MUK 3934933415 ENCODE Processing Pipeline bfe0a136e48bb7bb35c3dd20fac73ea6 https://www.encodeproject.org/files/ENCFF171TVX/@@download/ENCFF171TVX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF149UBZ bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 101 ENCFF327HOL, ENCFF489SBU, ENCFF643CGH 3155474389 ENCODE Processing Pipeline 75ce2c6d774648de9b0ebf2e329cb83e https://www.encodeproject.org/files/ENCFF149UBZ/@@download/ENCFF149UBZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF386HRK bam unfiltered alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF070RBE, ENCFF322UTY, ENCFF807MUK 5534307528 ENCODE Processing Pipeline 61eefba44f66de470eac1998508e6792 https://www.encodeproject.org/files/ENCFF386HRK/@@download/ENCFF386HRK.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF844RRZ bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF070RBE, ENCFF322UTY, ENCFF643CGH 3937274789 ENCODE Processing Pipeline 90f99f769b4ae0e1d0f57921e7ecd513 https://www.encodeproject.org/files/ENCFF844RRZ/@@download/ENCFF844RRZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF199ZQB bigWig signal p-value ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF171TVX, ENCFF182WHU 1499800178 ENCODE Processing Pipeline dcc7ddacf99e632ec9141cfc99e8017e https://www.encodeproject.org/files/ENCFF199ZQB/@@download/ENCFF199ZQB.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF131RLF bigWig fold change over control ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF171TVX, ENCFF182WHU 1473291500 ENCODE Processing Pipeline d741da883b780da5f023ad024f751578 https://www.encodeproject.org/files/ENCFF131RLF/@@download/ENCFF131RLF.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF483USE bigWig signal p-value ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF149UBZ, ENCFF810LLR, ENCFF844RRZ 1425692087 ENCODE Processing Pipeline f4c424106ec74af05ea5b002f6b5bf28 https://www.encodeproject.org/files/ENCFF483USE/@@download/ENCFF483USE.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF928LTH bigWig signal p-value ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF810LLR, ENCFF844RRZ 1279554372 ENCODE Processing Pipeline 6e08121bba16a8050b53999dc7dbe380 https://www.encodeproject.org/files/ENCFF928LTH/@@download/ENCFF928LTH.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF764VLX bigWig fold change over control ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF810LLR, ENCFF844RRZ 1480122342 ENCODE Processing Pipeline f8a8537327797b7c6ee334d5369cbf00 https://www.encodeproject.org/files/ENCFF764VLX/@@download/ENCFF764VLX.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF589VKO bigWig signal p-value ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF149UBZ, ENCFF810LLR 1171808477 ENCODE Processing Pipeline b1584dd7d745c4057c69d0d74600ab3a https://www.encodeproject.org/files/ENCFF589VKO/@@download/ENCFF589VKO.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF415CPU bigWig signal p-value ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF182WHU, ENCFF652ORT 1342439404 ENCODE Processing Pipeline 296286b66a137b006601441e7b04b66f https://www.encodeproject.org/files/ENCFF415CPU/@@download/ENCFF415CPU.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF437WGZ bigWig fold change over control ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF182WHU, ENCFF652ORT 1287862181 ENCODE Processing Pipeline ff799efb1737ca8e8c61575843184e0c https://www.encodeproject.org/files/ENCFF437WGZ/@@download/ENCFF437WGZ.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF345XAK bigWig signal p-value ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF171TVX, ENCFF182WHU, ENCFF652ORT 1623625274 ENCODE Processing Pipeline 13e17fdc9210d77fe450564d038926ec https://www.encodeproject.org/files/ENCFF345XAK/@@download/ENCFF345XAK.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF572LAI bigWig fold change over control ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF149UBZ, ENCFF810LLR 1294134624 ENCODE Processing Pipeline 897c9150723c2b9065d353265cdbb620 https://www.encodeproject.org/files/ENCFF572LAI/@@download/ENCFF572LAI.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF776NRS bigWig fold change over control ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF149UBZ, ENCFF810LLR, ENCFF844RRZ 1942534774 ENCODE Processing Pipeline a04c6fcb5d640c710583ea9015d3db93 https://www.encodeproject.org/files/ENCFF776NRS/@@download/ENCFF776NRS.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF742MPM bigWig fold change over control ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF171TVX, ENCFF182WHU, ENCFF652ORT 1933823298 ENCODE Processing Pipeline e49d77b00cd2159fbdc4e63a5a7eb660 https://www.encodeproject.org/files/ENCFF742MPM/@@download/ENCFF742MPM.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF143OUI bigBed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF999OAP 13518802 ENCODE Processing Pipeline 3930fd598c59182370c7638ebd5602fc https://www.encodeproject.org/files/ENCFF143OUI/@@download/ENCFF143OUI.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF999OAP bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF810LLR, ENCFF844RRZ 6733580 ENCODE Processing Pipeline f5d4c06687d465543e8842241d6e3f6c https://www.encodeproject.org/files/ENCFF999OAP/@@download/ENCFF999OAP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF169BQL bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF149UBZ, ENCFF810LLR, ENCFF844RRZ 7128160 ENCODE Processing Pipeline 3618bff697c87e7c8fbe0e0a28c58d5c https://www.encodeproject.org/files/ENCFF169BQL/@@download/ENCFF169BQL.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF669MVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF428WDS 342478 ENCODE Processing Pipeline 44a24884f623909985e7b16db96a57c8 https://www.encodeproject.org/files/ENCFF669MVQ/@@download/ENCFF669MVQ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF528WYW bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF149UBZ, ENCFF810LLR 6482884 ENCODE Processing Pipeline 8923bb6b38972c177d6cd844f29aa204 https://www.encodeproject.org/files/ENCFF528WYW/@@download/ENCFF528WYW.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF647BJJ bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF171TVX, ENCFF182WHU 6743142 ENCODE Processing Pipeline cad6810dbfb5cab6d05d7e8e1ebc5ce2 https://www.encodeproject.org/files/ENCFF647BJJ/@@download/ENCFF647BJJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF863TYK bigBed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF868JZD 13347243 ENCODE Processing Pipeline d4f0eb9c0a9044025c49d2da36d8ff8e https://www.encodeproject.org/files/ENCFF863TYK/@@download/ENCFF863TYK.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF123BYP bed narrowPeak optimal idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF169BQL, ENCFF419RSJ, ENCFF528WYW, ENCFF999OAP 181686 ENCODE Processing Pipeline 4145accc238f84aba3f0bafe24e87fbd https://www.encodeproject.org/files/ENCFF123BYP/@@download/ENCFF123BYP.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF827BDM bed narrowPeak optimal idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF001TDO, ENCFF620FTP, ENCFF647BJJ, ENCFF868JZD 179319 ENCODE Processing Pipeline 78db4a8aaa237056c96f17d07110cb75 https://www.encodeproject.org/files/ENCFF827BDM/@@download/ENCFF827BDM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF620FTP bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF182WHU, ENCFF652ORT 6482861 ENCODE Processing Pipeline 2cbc937be56cc8aabee3d13b6932cdb1 https://www.encodeproject.org/files/ENCFF620FTP/@@download/ENCFF620FTP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF402DBQ bigBed narrowPeak conservative idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF838GFD 342783 ENCODE Processing Pipeline 584ea587e2e57db30926a8a47b2cb09d https://www.encodeproject.org/files/ENCFF402DBQ/@@download/ENCFF402DBQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF826RDQ bigBed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF528WYW 11349910 ENCODE Processing Pipeline bfc6560075d1beb1ad5c8a0b7748d892 https://www.encodeproject.org/files/ENCFF826RDQ/@@download/ENCFF826RDQ.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF868JZD bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF171TVX, ENCFF182WHU, ENCFF652ORT 7132878 ENCODE Processing Pipeline d3ec9d49b5c612902f9faf826435b9b0 https://www.encodeproject.org/files/ENCFF868JZD/@@download/ENCFF868JZD.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF815OWK bigBed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF169BQL 13348064 ENCODE Processing Pipeline 899b82710425c2c7cf44eba60e3ef1a3 https://www.encodeproject.org/files/ENCFF815OWK/@@download/ENCFF815OWK.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF149VBQ bigBed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF647BJJ 13516707 ENCODE Processing Pipeline bd31bc634d4972989002d20b7b6a1260 https://www.encodeproject.org/files/ENCFF149VBQ/@@download/ENCFF149VBQ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF288WCH bigBed narrowPeak optimal idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF123BYP 350967 ENCODE Processing Pipeline a4106a8e336002eb95db0bf202f64c33 https://www.encodeproject.org/files/ENCFF288WCH/@@download/ENCFF288WCH.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF493QFV bigBed narrowPeak optimal idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF827BDM 346763 ENCODE Processing Pipeline 60eb4d26545cb286dda12a0925b1a918 https://www.encodeproject.org/files/ENCFF493QFV/@@download/ENCFF493QFV.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF838GFD bed narrowPeak conservative idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF169BQL, ENCFF419RSJ, ENCFF528WYW, ENCFF999OAP 174960 ENCODE Processing Pipeline 7e3253c3f0d0e7588732a8f69ee699af https://www.encodeproject.org/files/ENCFF838GFD/@@download/ENCFF838GFD.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF995ZFH bigBed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF620FTP 11340463 ENCODE Processing Pipeline e710b248a91244a8dc6a9d226efb8c0c https://www.encodeproject.org/files/ENCFF995ZFH/@@download/ENCFF995ZFH.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF428WDS bed narrowPeak conservative idr thresholded peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF001TDO, ENCFF620FTP, ENCFF647BJJ, ENCFF868JZD 175279 ENCODE Processing Pipeline 18dd710a673a0118d5de73fe9a2cf2d5 https://www.encodeproject.org/files/ENCFF428WDS/@@download/ENCFF428WDS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF355VVD fastq reads ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 835219484 Xiang-Dong Fu, UCSD dbe054ef93d7640a21d0a1dd5aa45e59 https://www.encodeproject.org/files/ENCFF355VVD/@@download/ENCFF355VVD.fastq.gz Illumina HiSeq 2500 /files/ENCFF510UAH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF356RYY fastq reads ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 768696915 Xiang-Dong Fu, UCSD e8bed452201b08fcdcb150b991b605eb https://www.encodeproject.org/files/ENCFF356RYY/@@download/ENCFF356RYY.fastq.gz Illumina HiSeq 2500 /files/ENCFF092DDZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF720NRD bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF355VVD, ENCFF807MUK 406036861 ENCODE Processing Pipeline 8cbf7a399af737664ead695b2dfda74a https://www.encodeproject.org/files/ENCFF720NRD/@@download/ENCFF720NRD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF589PPB bam unfiltered alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF356RYY, ENCFF643CGH 824383183 ENCODE Processing Pipeline 2be8f5140deaabdce2d11f850563b4f1 https://www.encodeproject.org/files/ENCFF589PPB/@@download/ENCFF589PPB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF635IJT bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF356RYY, ENCFF643CGH 373074765 ENCODE Processing Pipeline f14e66b64817219c6d3943de662030c7 https://www.encodeproject.org/files/ENCFF635IJT/@@download/ENCFF635IJT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF633IKF bam unfiltered alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF355VVD, ENCFF807MUK 888910794 ENCODE Processing Pipeline 4d78dc5549b61a41fce7e82d268e1073 https://www.encodeproject.org/files/ENCFF633IKF/@@download/ENCFF633IKF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF248FID bam unfiltered alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF356RYY, ENCFF807MUK 824106980 ENCODE Processing Pipeline c157e8339327b946ae0157e0dd4bdbe5 https://www.encodeproject.org/files/ENCFF248FID/@@download/ENCFF248FID.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF958KLM bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF356RYY, ENCFF807MUK 373777524 ENCODE Processing Pipeline fdb33ce0c1a240c009150516caf595c8 https://www.encodeproject.org/files/ENCFF958KLM/@@download/ENCFF958KLM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF334OXO bam unfiltered alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF355VVD, ENCFF643CGH 889103562 ENCODE Processing Pipeline cb0e0b4f9d9ff948ddd09d2b800b5976 https://www.encodeproject.org/files/ENCFF334OXO/@@download/ENCFF334OXO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF121RZC bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF355VVD, ENCFF643CGH 405226122 ENCODE Processing Pipeline 75a23455307c858ff3dbcbec82b13efe https://www.encodeproject.org/files/ENCFF121RZC/@@download/ENCFF121RZC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF363HBF bigWig signal p-value ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF572OMD, ENCFF958KLM 423795378 ENCODE Processing Pipeline f2177bea68de3d77e5915d2c12243df8 https://www.encodeproject.org/files/ENCFF363HBF/@@download/ENCFF363HBF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF085WDR bigWig signal p-value ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF720NRD, ENCFF958KLM 749620273 ENCODE Processing Pipeline 4c903ecb962bf5bdd1e2f6c40f6f03bd https://www.encodeproject.org/files/ENCFF085WDR/@@download/ENCFF085WDR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF273EYJ bed narrowPeak optimal idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF102MCA, ENCFF663NYD, ENCFF791LFD 1024718 ENCODE Processing Pipeline facef1e10b493fe42f62e65a2683f47b https://www.encodeproject.org/files/ENCFF273EYJ/@@download/ENCFF273EYJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF540CYY bigWig fold change over control ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF720NRD, ENCFF958KLM 435101891 ENCODE Processing Pipeline dc3c5eeef04acdacd0cc9846b3397ccf https://www.encodeproject.org/files/ENCFF540CYY/@@download/ENCFF540CYY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF693PVI bigBed narrowPeak conservative idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF852IKH 2029196 ENCODE Processing Pipeline 15c65e054030e669805fa622ce143cb3 https://www.encodeproject.org/files/ENCFF693PVI/@@download/ENCFF693PVI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF665FQH bigWig fold change over control ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF572OMD, ENCFF958KLM 195784257 ENCODE Processing Pipeline 36e8e7aedef7b881e4dc004fc22a40c2 https://www.encodeproject.org/files/ENCFF665FQH/@@download/ENCFF665FQH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF791LFD bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF572OMD, ENCFF958KLM 6185676 ENCODE Processing Pipeline fb1c60fc8fddc0244414dfb53e2e77ef https://www.encodeproject.org/files/ENCFF791LFD/@@download/ENCFF791LFD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF663NYD bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF720NRD, ENCFF958KLM 6769768 ENCODE Processing Pipeline e536533c39ff3d873d8e3ded031f057d https://www.encodeproject.org/files/ENCFF663NYD/@@download/ENCFF663NYD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF236RMG bigBed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF663NYD 11036905 ENCODE Processing Pipeline 353337a93386d2e373e4d9faa2cde6b8 https://www.encodeproject.org/files/ENCFF236RMG/@@download/ENCFF236RMG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF782XCM bigWig signal p-value ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF508DBG, ENCFF720NRD 533530645 ENCODE Processing Pipeline 69aff1991393ce7a88222efc916ecd28 https://www.encodeproject.org/files/ENCFF782XCM/@@download/ENCFF782XCM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF102MCA bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF508DBG, ENCFF720NRD 6204011 ENCODE Processing Pipeline c40bd1cdd9037b825572839798363719 https://www.encodeproject.org/files/ENCFF102MCA/@@download/ENCFF102MCA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF433VMF bigBed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF791LFD 11067862 ENCODE Processing Pipeline 022d51fc7562a3344011efff526490bb https://www.encodeproject.org/files/ENCFF433VMF/@@download/ENCFF433VMF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF574LQA bigBed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF102MCA 11015289 ENCODE Processing Pipeline 43f747ac4cded02b9a30433624311c1c https://www.encodeproject.org/files/ENCFF574LQA/@@download/ENCFF574LQA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF082TXS bigBed narrowPeak optimal idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF273EYJ 2084939 ENCODE Processing Pipeline 138be99e595289027c7c127e12356648 https://www.encodeproject.org/files/ENCFF082TXS/@@download/ENCFF082TXS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF015NSS bigWig fold change over control ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF508DBG, ENCFF720NRD 220275167 ENCODE Processing Pipeline fee9822a0024fc6306faabb9cdbc0db6 https://www.encodeproject.org/files/ENCFF015NSS/@@download/ENCFF015NSS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF852IKH bed narrowPeak conservative idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF102MCA, ENCFF663NYD, ENCFF791LFD 989712 ENCODE Processing Pipeline ec1d293bfbe9f11dc57ca31a66af95ef https://www.encodeproject.org/files/ENCFF852IKH/@@download/ENCFF852IKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF151PMX bigWig fold change over control ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100PTE, ENCFF121RZC, ENCFF635IJT, ENCFF721LZU 431946230 ENCODE Processing Pipeline 80841cf2b1d96ef979e5cf95620ac17d https://www.encodeproject.org/files/ENCFF151PMX/@@download/ENCFF151PMX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF856WKJ bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF121RZC, ENCFF721LZU 6377037 ENCODE Processing Pipeline 160001ff110ec52d9aa0cb0df891d4d2 https://www.encodeproject.org/files/ENCFF856WKJ/@@download/ENCFF856WKJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF106SGM bigWig signal p-value ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF121RZC, ENCFF721LZU 466280137 ENCODE Processing Pipeline 97ce4726971400c48557357bdb970b8e https://www.encodeproject.org/files/ENCFF106SGM/@@download/ENCFF106SGM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF301BHU bigWig signal p-value ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100PTE, ENCFF121RZC, ENCFF635IJT, ENCFF721LZU 743643177 ENCODE Processing Pipeline fd7dcdfe8f5820bc57d52ebce075dabf https://www.encodeproject.org/files/ENCFF301BHU/@@download/ENCFF301BHU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF314SZG bigWig fold change over control ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF121RZC, ENCFF721LZU 220440472 ENCODE Processing Pipeline cd2325d8d72164cd7c5df4e78d1de850 https://www.encodeproject.org/files/ENCFF314SZG/@@download/ENCFF314SZG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF659OHO bigWig signal p-value ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100PTE, ENCFF635IJT 478128647 ENCODE Processing Pipeline 1b944b4186fc90419f1e326221681eb8 https://www.encodeproject.org/files/ENCFF659OHO/@@download/ENCFF659OHO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF226OGI bigWig fold change over control ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100PTE, ENCFF635IJT 194253271 ENCODE Processing Pipeline edf47ee433be078c4da6eb0e70e294a5 https://www.encodeproject.org/files/ENCFF226OGI/@@download/ENCFF226OGI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF429REA bigBed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF260USW 10865981 ENCODE Processing Pipeline 3c15ead4d2aedac5ace12b66c578bc6e https://www.encodeproject.org/files/ENCFF429REA/@@download/ENCFF429REA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF603VZJ bigBed narrowPeak conservative idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF791JTK 2034916 ENCODE Processing Pipeline 9dc10194ebf1afc350c8195c288203a3 https://www.encodeproject.org/files/ENCFF603VZJ/@@download/ENCFF603VZJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF260USW bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100PTE, ENCFF635IJT 6024118 ENCODE Processing Pipeline faf769b4011f5ca2fe2b1ce37326d102 https://www.encodeproject.org/files/ENCFF260USW/@@download/ENCFF260USW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF791JTK bed narrowPeak conservative idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF260USW, ENCFF274KYK, ENCFF419RSJ, ENCFF856WKJ 989110 ENCODE Processing Pipeline 27b3908134693ec5c5d3d4caca21c9fb https://www.encodeproject.org/files/ENCFF791JTK/@@download/ENCFF791JTK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF283CUY bed narrowPeak optimal idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF260USW, ENCFF274KYK, ENCFF419RSJ, ENCFF856WKJ 1022858 ENCODE Processing Pipeline 3df5a2aa20db7842e933d3420f523221 https://www.encodeproject.org/files/ENCFF283CUY/@@download/ENCFF283CUY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF274KYK bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100PTE, ENCFF121RZC, ENCFF635IJT, ENCFF721LZU 6824802 ENCODE Processing Pipeline 28cef2f5109c338dcd487daa298d0724 https://www.encodeproject.org/files/ENCFF274KYK/@@download/ENCFF274KYK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF779KUH bigBed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF274KYK 11131756 ENCODE Processing Pipeline 1bb491a3b2ae5b06cbb7452c423a042b https://www.encodeproject.org/files/ENCFF779KUH/@@download/ENCFF779KUH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF846OXY bigBed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF856WKJ 11261420 ENCODE Processing Pipeline 601bfd20de7f1250d1fc28780adad83f https://www.encodeproject.org/files/ENCFF846OXY/@@download/ENCFF846OXY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF648YPL bigBed narrowPeak optimal idr thresholded peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF283CUY 2087757 ENCODE Processing Pipeline 3721812892bc3537fd5d5a895758e8c0 https://www.encodeproject.org/files/ENCFF648YPL/@@download/ENCFF648YPL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF561ORG fastq reads ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 1 ENCFF855LGC 3690804943 Michael Snyder, Stanford cb69f93cfdd2fdd0ca750b21beec9929 https://www.encodeproject.org/files/ENCFF561ORG/@@download/ENCFF561ORG.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF855LGC fastq reads ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 1 101 paired-ended 2 ENCFF561ORG 3732817654 Michael Snyder, Stanford f4f2977f62fbb5fda2f6881f8a1def98 https://www.encodeproject.org/files/ENCFF855LGC/@@download/ENCFF855LGC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF260RRI bam unfiltered alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF561ORG, ENCFF807MUK, ENCFF855LGC 8062228957 ENCODE Processing Pipeline 617d2c7c1412ea46a8f2c5b92b188330 https://www.encodeproject.org/files/ENCFF260RRI/@@download/ENCFF260RRI.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF713PPW bam unfiltered alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF561ORG, ENCFF643CGH, ENCFF855LGC 8070686313 ENCODE Processing Pipeline 527a219b645e207b5a5c6508a6040ce0 https://www.encodeproject.org/files/ENCFF713PPW/@@download/ENCFF713PPW.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF089CUH bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF561ORG, ENCFF807MUK, ENCFF855LGC 6770351274 ENCODE Processing Pipeline 657a5e45fde6b708edbf36af23299a08 https://www.encodeproject.org/files/ENCFF089CUH/@@download/ENCFF089CUH.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF818IAY bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF561ORG, ENCFF643CGH, ENCFF855LGC 6772740203 ENCODE Processing Pipeline 8e2f1d2f3b4e7ea2640a01a0ce41020d https://www.encodeproject.org/files/ENCFF818IAY/@@download/ENCFF818IAY.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF713AED bigWig fold change over control ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF089CUH 1702966956 ENCODE Processing Pipeline c90636308eb4659d7a8b4dc4a462a6dd https://www.encodeproject.org/files/ENCFF713AED/@@download/ENCFF713AED.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF034SGL bigWig signal p-value ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF089CUH 1570752054 ENCODE Processing Pipeline aa174b936653d115754bda090d652a5b https://www.encodeproject.org/files/ENCFF034SGL/@@download/ENCFF034SGL.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF076AUM bigWig signal p-value ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF818IAY 1412887135 ENCODE Processing Pipeline e68c5ecdd166f89b9f7c6652922b2693 https://www.encodeproject.org/files/ENCFF076AUM/@@download/ENCFF076AUM.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF641QZU bigWig fold change over control ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF818IAY 1669799051 ENCODE Processing Pipeline 0f4c06c115b899feb817508d91668b5c https://www.encodeproject.org/files/ENCFF641QZU/@@download/ENCFF641QZU.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF160YCO bigBed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF136KIH 13360820 ENCODE Processing Pipeline b75ba57305fd5f3bae8cd4351ae37ba1 https://www.encodeproject.org/files/ENCFF160YCO/@@download/ENCFF160YCO.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF210FOA bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF089CUH 6984508 ENCODE Processing Pipeline 0067d4f1095dd5774a5da7a0d4ad4979 https://www.encodeproject.org/files/ENCFF210FOA/@@download/ENCFF210FOA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF510XQT bigBed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF210FOA 13353560 ENCODE Processing Pipeline ade834877a493a61d2f36be6c20c056a https://www.encodeproject.org/files/ENCFF510XQT/@@download/ENCFF510XQT.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF136KIH bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF818IAY 6979854 ENCODE Processing Pipeline 1858dedbd0cee4e1d2da27eee7cd37b2 https://www.encodeproject.org/files/ENCFF136KIH/@@download/ENCFF136KIH.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF158KLD fastq reads ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 1 ENCFF933FSS 4949844620 Michael Snyder, Stanford 35c7330325c6a5951dfe3ba7df5bbe9c https://www.encodeproject.org/files/ENCFF158KLD/@@download/ENCFF158KLD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF933FSS fastq reads ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 1 101 paired-ended 2 ENCFF158KLD 5052353028 Michael Snyder, Stanford 4f6c0b410ed6179c044b1042fe8f1380 https://www.encodeproject.org/files/ENCFF933FSS/@@download/ENCFF933FSS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF775IFZ bam unfiltered alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF158KLD, ENCFF643CGH, ENCFF933FSS 9615705142 ENCODE Processing Pipeline fb8bf28e2c0d92a4b056a13e44f2d12e https://www.encodeproject.org/files/ENCFF775IFZ/@@download/ENCFF775IFZ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF050ZWL bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF158KLD, ENCFF643CGH, ENCFF933FSS 8321947431 ENCODE Processing Pipeline 47488c38b672ad7395144f4fa572ae8a https://www.encodeproject.org/files/ENCFF050ZWL/@@download/ENCFF050ZWL.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF741AZB bam unfiltered alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF158KLD, ENCFF807MUK, ENCFF933FSS 9602284928 ENCODE Processing Pipeline 172ec42149d6f5a9542f1e6ea2459ce5 https://www.encodeproject.org/files/ENCFF741AZB/@@download/ENCFF741AZB.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF335RUN bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF158KLD, ENCFF807MUK, ENCFF933FSS 8322744723 ENCODE Processing Pipeline e72dc6fc15c5df68506ab621670d56ec https://www.encodeproject.org/files/ENCFF335RUN/@@download/ENCFF335RUN.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF981ETW bigWig signal p-value ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF335RUN 1824251189 ENCODE Processing Pipeline c2203821e2d9163290e5b7347209a1af https://www.encodeproject.org/files/ENCFF981ETW/@@download/ENCFF981ETW.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF364LSG bigWig signal p-value ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF089CUH, ENCFF335RUN 1958319384 ENCODE Processing Pipeline a2674bfaa1de0704bd3b79beefe1918e https://www.encodeproject.org/files/ENCFF364LSG/@@download/ENCFF364LSG.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF013ALD bigWig signal p-value ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF050ZWL, ENCFF818IAY 1945213674 ENCODE Processing Pipeline 03ddd7005981b8377d958f3f53286e4a https://www.encodeproject.org/files/ENCFF013ALD/@@download/ENCFF013ALD.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF886BZW bigWig signal p-value ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF050ZWL 1641087463 ENCODE Processing Pipeline 8f7fe5422f77cd3c848c516b5adaae51 https://www.encodeproject.org/files/ENCFF886BZW/@@download/ENCFF886BZW.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF440UMC bigWig fold change over control ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF050ZWL 1907881481 ENCODE Processing Pipeline 610e9e3e114a9f16159c95fc6259e450 https://www.encodeproject.org/files/ENCFF440UMC/@@download/ENCFF440UMC.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF193PVJ bigWig fold change over control ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF335RUN 1890145992 ENCODE Processing Pipeline ca42b0b689d662cfedeb7f17da328fa8 https://www.encodeproject.org/files/ENCFF193PVJ/@@download/ENCFF193PVJ.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF669WTA bigWig fold change over control ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF089CUH, ENCFF335RUN 2447375759 ENCODE Processing Pipeline 192be99c79237f0be4e80293d4717afb https://www.encodeproject.org/files/ENCFF669WTA/@@download/ENCFF669WTA.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF362IEJ bigWig fold change over control ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF050ZWL, ENCFF818IAY 2435347441 ENCODE Processing Pipeline c5a15af6ea1f9b1ead75e325c49314b3 https://www.encodeproject.org/files/ENCFF362IEJ/@@download/ENCFF362IEJ.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF599QYZ bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF335RUN 6997011 ENCODE Processing Pipeline 12aa683628ee71a645b0e6cedab340fb https://www.encodeproject.org/files/ENCFF599QYZ/@@download/ENCFF599QYZ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF791INS bigBed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF599QYZ 11370480 ENCODE Processing Pipeline 17546e4e6d91924c341b99321b60afde https://www.encodeproject.org/files/ENCFF791INS/@@download/ENCFF791INS.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF443TBN bed narrowPeak optimal idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF210FOA, ENCFF365RUW, ENCFF599QYZ 236976 ENCODE Processing Pipeline d07eeb5116ce214001f5aaa3cc7274c9 https://www.encodeproject.org/files/ENCFF443TBN/@@download/ENCFF443TBN.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF953AJY bigBed narrowPeak conservative idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF062BXP 384979 ENCODE Processing Pipeline 14f4c7cedf9a86ee16fd5e685250e4fa https://www.encodeproject.org/files/ENCFF953AJY/@@download/ENCFF953AJY.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF365RUW bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF089CUH, ENCFF335RUN 7214072 ENCODE Processing Pipeline bd26870fbe23d03bb8b645443e044c52 https://www.encodeproject.org/files/ENCFF365RUW/@@download/ENCFF365RUW.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF062BXP bed narrowPeak conservative idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF001TDO, ENCFF210FOA, ENCFF365RUW, ENCFF599QYZ 185168 ENCODE Processing Pipeline 146c38de7918e3d41dde3b2c89a69d5c https://www.encodeproject.org/files/ENCFF062BXP/@@download/ENCFF062BXP.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF116LUS bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF050ZWL 6985548 ENCODE Processing Pipeline 5ea4cfcce3b94d3305c499e8bce00c52 https://www.encodeproject.org/files/ENCFF116LUS/@@download/ENCFF116LUS.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF584FVJ bigBed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF365RUW 11126522 ENCODE Processing Pipeline 5d27641fe01344c4567034f5786817d7 https://www.encodeproject.org/files/ENCFF584FVJ/@@download/ENCFF584FVJ.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF768JQC bigBed narrowPeak optimal idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF443TBN 460820 ENCODE Processing Pipeline 5a17c6e1284a19d809122a9b8fe4d5f5 https://www.encodeproject.org/files/ENCFF768JQC/@@download/ENCFF768JQC.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF184LAQ bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF050ZWL, ENCFF818IAY 7222616 ENCODE Processing Pipeline d273d464f798b4af8e213038f5a1417e https://www.encodeproject.org/files/ENCFF184LAQ/@@download/ENCFF184LAQ.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF012ZZA bigBed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF116LUS 11383184 ENCODE Processing Pipeline 776b6b9f1efd735ab2938fbe656d414c https://www.encodeproject.org/files/ENCFF012ZZA/@@download/ENCFF012ZZA.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF437JVZ bed narrowPeak optimal idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF116LUS, ENCFF136KIH, ENCFF184LAQ, ENCFF419RSJ 234900 ENCODE Processing Pipeline f2238dde28f04dc7b87e96c5f44809c0 https://www.encodeproject.org/files/ENCFF437JVZ/@@download/ENCFF437JVZ.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF905OCB bigBed narrowPeak optimal idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF437JVZ 458240 ENCODE Processing Pipeline 293de5e9dc493405df670cc4b3ecc2d9 https://www.encodeproject.org/files/ENCFF905OCB/@@download/ENCFF905OCB.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF378RHA bigBed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF184LAQ 11135492 ENCODE Processing Pipeline a3c44ede4b60bcf0d6af70f686e924f7 https://www.encodeproject.org/files/ENCFF378RHA/@@download/ENCFF378RHA.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF307WUO bigBed narrowPeak conservative idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF563QVC 389958 ENCODE Processing Pipeline 15b77e2258744b2af94dedec0b37ec89 https://www.encodeproject.org/files/ENCFF307WUO/@@download/ENCFF307WUO.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF563QVC bed narrowPeak conservative idr thresholded peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1, 2 ENCFF116LUS, ENCFF136KIH, ENCFF184LAQ, ENCFF419RSJ 188805 ENCODE Processing Pipeline a769f4b3c64075f7a71968e7a5dccaab https://www.encodeproject.org/files/ENCFF563QVC/@@download/ENCFF563QVC.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF590EUS fastq reads ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF463FLS 3035991923 Michael Snyder, Stanford 172a2b5f2ddf9fdff6427923628d0120 SRA:SRR5111372 https://www.encodeproject.org/files/ENCFF590EUS/@@download/ENCFF590EUS.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF469HPU fastq reads ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF944NFT 1249256917 Michael Snyder, Stanford ab63561fcfa382e0e8a3e48bcf1f7a27 SRA:SRR5111371 https://www.encodeproject.org/files/ENCFF469HPU/@@download/ENCFF469HPU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF944NFT fastq reads ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF469HPU 1233086310 Michael Snyder, Stanford 7330bf422f1202a9ff842fe57c97cb38 SRA:SRR5111371 https://www.encodeproject.org/files/ENCFF944NFT/@@download/ENCFF944NFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF463FLS fastq reads ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF590EUS 3151348998 Michael Snyder, Stanford f2dde3bde7f903c43a88e1693985a497 SRA:SRR5111372 https://www.encodeproject.org/files/ENCFF463FLS/@@download/ENCFF463FLS.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF921QFC bam unfiltered alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF469HPU, ENCFF643CGH, ENCFF944NFT 2834836504 ENCODE Processing Pipeline 9607e6b713faf32c9bc274dadf9125f3 https://www.encodeproject.org/files/ENCFF921QFC/@@download/ENCFF921QFC.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF533XHW bam unfiltered alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF469HPU, ENCFF807MUK, ENCFF944NFT 2831360464 ENCODE Processing Pipeline 822bff84f9b778efbd4d2d38a807d659 https://www.encodeproject.org/files/ENCFF533XHW/@@download/ENCFF533XHW.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF291XFS bam unfiltered alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF463FLS, ENCFF590EUS, ENCFF807MUK 6723906504 ENCODE Processing Pipeline 2508140c0ac633c59b576486ed57088b https://www.encodeproject.org/files/ENCFF291XFS/@@download/ENCFF291XFS.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF607CWP bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF469HPU, ENCFF807MUK, ENCFF944NFT 2464377778 ENCODE Processing Pipeline c8c3395589f8805bad955a151358ad0c https://www.encodeproject.org/files/ENCFF607CWP/@@download/ENCFF607CWP.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF902ILU bam unfiltered alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF463FLS, ENCFF590EUS, ENCFF643CGH 6730450836 ENCODE Processing Pipeline a50ee6a8757e271f15f2acda5536e6a1 https://www.encodeproject.org/files/ENCFF902ILU/@@download/ENCFF902ILU.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF663TTK bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF469HPU, ENCFF643CGH, ENCFF944NFT 2465642890 ENCODE Processing Pipeline 96864a8eca478122f15bfa328e71ed68 https://www.encodeproject.org/files/ENCFF663TTK/@@download/ENCFF663TTK.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF545NUA bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF463FLS, ENCFF590EUS, ENCFF807MUK 5748090708 ENCODE Processing Pipeline f5fce8b18caf0ef1c58c8749e7c4c930 https://www.encodeproject.org/files/ENCFF545NUA/@@download/ENCFF545NUA.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF603XMK bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF463FLS, ENCFF590EUS, ENCFF643CGH 5749734821 ENCODE Processing Pipeline fc56355e44dd01ce7bd91837a58c5300 https://www.encodeproject.org/files/ENCFF603XMK/@@download/ENCFF603XMK.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF842HWK bigWig signal p-value ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF545NUA 1268153203 ENCODE Processing Pipeline ae19b477bfa4c8f96ba889f8daa447f9 https://www.encodeproject.org/files/ENCFF842HWK/@@download/ENCFF842HWK.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF238TZN bigWig signal p-value ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF607CWP 1117151118 ENCODE Processing Pipeline 25edda00cc19418e25bf4b63e6050653 https://www.encodeproject.org/files/ENCFF238TZN/@@download/ENCFF238TZN.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF164QVZ bigWig signal p-value ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF545NUA, ENCFF607CWP 1537178528 ENCODE Processing Pipeline a89cbbd4d311588c1c3950326d078d89 https://www.encodeproject.org/files/ENCFF164QVZ/@@download/ENCFF164QVZ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF090XGM bigWig fold change over control ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF545NUA 1515855782 ENCODE Processing Pipeline 4487606dfc311f864fa7bd094934740d https://www.encodeproject.org/files/ENCFF090XGM/@@download/ENCFF090XGM.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF428MMV bigWig fold change over control ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF607CWP 1004926776 ENCODE Processing Pipeline 5f535933d36f6a100dc40e7d05953cb6 https://www.encodeproject.org/files/ENCFF428MMV/@@download/ENCFF428MMV.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF502CNN bigWig fold change over control ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF545NUA, ENCFF607CWP 1856966833 ENCODE Processing Pipeline a3e0d51b3805375026c8a83d4fd9ebc0 https://www.encodeproject.org/files/ENCFF502CNN/@@download/ENCFF502CNN.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF750XWP bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF545NUA 7195544 ENCODE Processing Pipeline 3cb03aa711ebfff95d43d72c18132406 https://www.encodeproject.org/files/ENCFF750XWP/@@download/ENCFF750XWP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF165LZH bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF607CWP 6500242 ENCODE Processing Pipeline 58509d36a506bd02d8ba2ffb88c98216 https://www.encodeproject.org/files/ENCFF165LZH/@@download/ENCFF165LZH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF927IQD bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF545NUA, ENCFF607CWP 7222629 ENCODE Processing Pipeline dba1b76f5f54e87b4b9533a0794fa77d https://www.encodeproject.org/files/ENCFF927IQD/@@download/ENCFF927IQD.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF665BWD bigBed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750XWP 13202736 ENCODE Processing Pipeline 6603f44c82c63c5cec7c8d700ac05a84 https://www.encodeproject.org/files/ENCFF665BWD/@@download/ENCFF665BWD.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF868WVC bigBed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF165LZH 13293849 ENCODE Processing Pipeline 9e7fb84588dbe87f0b756fe41b6c9ae2 https://www.encodeproject.org/files/ENCFF868WVC/@@download/ENCFF868WVC.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF669VHE bigBed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF927IQD 13085089 ENCODE Processing Pipeline f8d5496496559ce89d0d17474bfcd8cb https://www.encodeproject.org/files/ENCFF669VHE/@@download/ENCFF669VHE.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF827PJO bed narrowPeak conservative idr thresholded peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF165LZH, ENCFF750XWP, ENCFF927IQD 709811 ENCODE Processing Pipeline 6cf22a0b4e38aaf573bed69455003c93 https://www.encodeproject.org/files/ENCFF827PJO/@@download/ENCFF827PJO.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF460SNU bigBed narrowPeak conservative idr thresholded peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF827PJO 1552380 ENCODE Processing Pipeline b31dea1736e0cb8e5eef01d6fbd835ea https://www.encodeproject.org/files/ENCFF460SNU/@@download/ENCFF460SNU.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF834ZRT bed narrowPeak optimal idr thresholded peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF165LZH, ENCFF750XWP, ENCFF927IQD 778063 ENCODE Processing Pipeline 4e8f99f86dfa403b7253444d80ff5788 https://www.encodeproject.org/files/ENCFF834ZRT/@@download/ENCFF834ZRT.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF277QQI bigBed narrowPeak optimal idr thresholded peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF834ZRT 1685673 ENCODE Processing Pipeline aa507ce708e81155770c9d8883c7a917 https://www.encodeproject.org/files/ENCFF277QQI/@@download/ENCFF277QQI.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF007NEG bigWig signal p-value ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF603XMK 1306496533 ENCODE Processing Pipeline dd6c3b76f3dcc4d8bd8bae64b79cfb4e https://www.encodeproject.org/files/ENCFF007NEG/@@download/ENCFF007NEG.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF869VPW bigWig signal p-value ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF663TTK 1152721914 ENCODE Processing Pipeline 0dbd755669e7f0ed90a621cecbcf35b2 https://www.encodeproject.org/files/ENCFF869VPW/@@download/ENCFF869VPW.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF623PEI bigWig signal p-value ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF603XMK, ENCFF663TTK 1481832266 ENCODE Processing Pipeline 7020faee6e99d0e4de8c1194ba5f374c https://www.encodeproject.org/files/ENCFF623PEI/@@download/ENCFF623PEI.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF402SHD bigWig fold change over control ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF603XMK 1515806476 ENCODE Processing Pipeline ff86c923a2542cb42bb6e26db7a49e22 https://www.encodeproject.org/files/ENCFF402SHD/@@download/ENCFF402SHD.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF176EXA bigWig fold change over control ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF663TTK 1023099608 ENCODE Processing Pipeline 977ab94134c520cca11cd0abb6e2691b https://www.encodeproject.org/files/ENCFF176EXA/@@download/ENCFF176EXA.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF652YQI bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF663TTK 6418379 ENCODE Processing Pipeline caa58af654d4cebec9b047f15f957ea3 https://www.encodeproject.org/files/ENCFF652YQI/@@download/ENCFF652YQI.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF085TTG bigWig fold change over control ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF603XMK, ENCFF663TTK 1825414649 ENCODE Processing Pipeline 4b32a82c5ff0a82b305ce327eb3e1fd5 https://www.encodeproject.org/files/ENCFF085TTG/@@download/ENCFF085TTG.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF442YRD bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF603XMK 7165821 ENCODE Processing Pipeline 587eaf99c3eb6fa9d646a8c7c3d54a5c https://www.encodeproject.org/files/ENCFF442YRD/@@download/ENCFF442YRD.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF726FZA bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF603XMK, ENCFF663TTK 7217323 ENCODE Processing Pipeline 0843517979fe279e0edad42375c6ebad https://www.encodeproject.org/files/ENCFF726FZA/@@download/ENCFF726FZA.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF970FGT bigBed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF652YQI 13337676 ENCODE Processing Pipeline 1377ebc1177371c43169e9657890aad7 https://www.encodeproject.org/files/ENCFF970FGT/@@download/ENCFF970FGT.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF504CYS bigBed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF726FZA 13099527 ENCODE Processing Pipeline 8643711376f1f3cf486751c9acfb748c https://www.encodeproject.org/files/ENCFF504CYS/@@download/ENCFF504CYS.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF339JEX bigBed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF442YRD 13211982 ENCODE Processing Pipeline b27ed6e54e626e782de9c55decea9261 https://www.encodeproject.org/files/ENCFF339JEX/@@download/ENCFF339JEX.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF373VEK bed narrowPeak optimal idr thresholded peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF442YRD, ENCFF652YQI, ENCFF726FZA 703430 ENCODE Processing Pipeline 36f73bf4513ac631229e5e33f26982a2 https://www.encodeproject.org/files/ENCFF373VEK/@@download/ENCFF373VEK.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF040YND bigBed narrowPeak optimal idr thresholded peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF373VEK 1542524 ENCODE Processing Pipeline d700dca3130ad105ee4bf2bb69e16a35 https://www.encodeproject.org/files/ENCFF040YND/@@download/ENCFF040YND.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF819GKB bam unfiltered alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIQ, ENCFF002EIT, ENCFF807MUK 4458763964 ENCODE Processing Pipeline 5f3f65a554edb32548d13b20b87629a9 https://www.encodeproject.org/files/ENCFF819GKB/@@download/ENCFF819GKB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF355XUF bam unfiltered alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIN, ENCFF002EIS, ENCFF807MUK 4356972767 ENCODE Processing Pipeline e1515a7b475f10645725c2c78d2b4fb4 https://www.encodeproject.org/files/ENCFF355XUF/@@download/ENCFF355XUF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF218NQX bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 1797800442 ENCODE Processing Pipeline a785fe3a54558ce47d8dc2f78dd61f97 https://www.encodeproject.org/files/ENCFF218NQX/@@download/ENCFF218NQX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EIN fastq reads ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EIS 2046351913 Michael Snyder, Stanford a8dcf129ab2894b6700c2caef459b695 SRA:SRR5111129 https://www.encodeproject.org/files/ENCFF002EIN/@@download/ENCFF002EIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EIQ fastq reads ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EIT 2097309009 Michael Snyder, Stanford ce0fe7a0dfd556d276028d177ca3e297 SRA:SRR5111130 https://www.encodeproject.org/files/ENCFF002EIQ/@@download/ENCFF002EIQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EIS fastq reads ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EIN 2036096511 Michael Snyder, Stanford 00f452d141011fb991fc54b83af4d748 SRA:SRR5111129 https://www.encodeproject.org/files/ENCFF002EIS/@@download/ENCFF002EIS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF002EIT fastq reads ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EIQ 2100370627 Michael Snyder, Stanford 1305ac3312d80b91487f65532d47194a SRA:SRR5111130 https://www.encodeproject.org/files/ENCFF002EIT/@@download/ENCFF002EIT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF274RCD bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 1934055432 ENCODE Processing Pipeline 5c40470fa9d62b374273ef8dc07c29ee https://www.encodeproject.org/files/ENCFF274RCD/@@download/ENCFF274RCD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF695WCL bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 6583780 ENCODE Processing Pipeline e6983af2a0a7532c4c8b4d4d3a1a9080 https://www.encodeproject.org/files/ENCFF695WCL/@@download/ENCFF695WCL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF914GVW bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 6921612 ENCODE Processing Pipeline 8cfeba5ecb646957e24b36fb21b73f6b https://www.encodeproject.org/files/ENCFF914GVW/@@download/ENCFF914GVW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF896HIP bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 7234229 ENCODE Processing Pipeline f08984dadeadf0ca7ec433bf21aa190a https://www.encodeproject.org/files/ENCFF896HIP/@@download/ENCFF896HIP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF226XKC bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF695WCL 13303411 ENCODE Processing Pipeline ec7c285dfbc064e929a86ed071073d7d https://www.encodeproject.org/files/ENCFF226XKC/@@download/ENCFF226XKC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF354BXG bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF914GVW 13150218 ENCODE Processing Pipeline f9f4c15ea99834fd42eb951c6f5e6b72 https://www.encodeproject.org/files/ENCFF354BXG/@@download/ENCFF354BXG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF719NIX bed narrowPeak conservative idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF695WCL, ENCFF896HIP, ENCFF914GVW 255419 ENCODE Processing Pipeline 4208074ac43189b578f0813cf40c8270 https://www.encodeproject.org/files/ENCFF719NIX/@@download/ENCFF719NIX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF003DOC bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF896HIP 13020255 ENCODE Processing Pipeline 502090ec5823ab3b326740ea6b85a2fd https://www.encodeproject.org/files/ENCFF003DOC/@@download/ENCFF003DOC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF364YBU bigBed narrowPeak conservative idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF719NIX 555776 ENCODE Processing Pipeline e8a8ec0a63be53ed6aa0db840deee632 https://www.encodeproject.org/files/ENCFF364YBU/@@download/ENCFF364YBU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF582YPB bed narrowPeak optimal idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF695WCL, ENCFF896HIP, ENCFF914GVW 407528 ENCODE Processing Pipeline ce5c6d573337c277ed2ac7ed78cb3eed https://www.encodeproject.org/files/ENCFF582YPB/@@download/ENCFF582YPB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF123PMO bigBed narrowPeak optimal idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF582YPB 950079 ENCODE Processing Pipeline 17b451b7a9a10d6a6602b5f2558783b6 https://www.encodeproject.org/files/ENCFF123PMO/@@download/ENCFF123PMO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF950GGY bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIN, ENCFF002EIS, ENCFF807MUK 3133213178 ENCODE Processing Pipeline 5789ae9c77f65bc6dd1e3510d0abc3cc https://www.encodeproject.org/files/ENCFF950GGY/@@download/ENCFF950GGY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF274ZBZ bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIQ, ENCFF002EIT, ENCFF807MUK 3285979011 ENCODE Processing Pipeline 03f485c4b71346a05e59663038e1b86b https://www.encodeproject.org/files/ENCFF274ZBZ/@@download/ENCFF274ZBZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF404YGN bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 1087271404 ENCODE Processing Pipeline 20d3d07480106b2fe4a4f959e38b05e4 https://www.encodeproject.org/files/ENCFF404YGN/@@download/ENCFF404YGN.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF783JLW bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 1042318362 ENCODE Processing Pipeline baa32bdf310cc188669f3b1e2a5d6121 https://www.encodeproject.org/files/ENCFF783JLW/@@download/ENCFF783JLW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF885SSN bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 1803859005 ENCODE Processing Pipeline 21f6600407cfd626187aa0e07151554f https://www.encodeproject.org/files/ENCFF885SSN/@@download/ENCFF885SSN.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF931UPV bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 1060468885 ENCODE Processing Pipeline f9250dfdad240517d4c0aedbb7f36f2e https://www.encodeproject.org/files/ENCFF931UPV/@@download/ENCFF931UPV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF816AZE bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 1036167150 ENCODE Processing Pipeline 2b905c0c90424b43d637a957da32b78d https://www.encodeproject.org/files/ENCFF816AZE/@@download/ENCFF816AZE.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF719MEC bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 7249645 ENCODE Processing Pipeline 68858fd2b2be45acbdab1c2ea2759df5 https://www.encodeproject.org/files/ENCFF719MEC/@@download/ENCFF719MEC.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF010MNE bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 1941498487 ENCODE Processing Pipeline 0ea8faefcfa89dac7ba6c6297ece4eac https://www.encodeproject.org/files/ENCFF010MNE/@@download/ENCFF010MNE.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF596CWP bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 6695065 ENCODE Processing Pipeline ef13e3b8be36e873b31da94086526824 https://www.encodeproject.org/files/ENCFF596CWP/@@download/ENCFF596CWP.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF103LHL bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF893FDT 13151179 ENCODE Processing Pipeline eb347bd731c02e2b3ca0e8bb3532afe4 https://www.encodeproject.org/files/ENCFF103LHL/@@download/ENCFF103LHL.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF893FDT bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 6996985 ENCODE Processing Pipeline 923708270fe325cf05efb068175c9b1f https://www.encodeproject.org/files/ENCFF893FDT/@@download/ENCFF893FDT.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF255XIP bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF719MEC 13018742 ENCODE Processing Pipeline 1f8dca8b8477639c2afc8e2a887d9131 https://www.encodeproject.org/files/ENCFF255XIP/@@download/ENCFF255XIP.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF379RAN bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF596CWP 13308452 ENCODE Processing Pipeline f98dcd94f9cd57c43ea1df29fe60e0bd https://www.encodeproject.org/files/ENCFF379RAN/@@download/ENCFF379RAN.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF926PJS bam unfiltered alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIQ, ENCFF002EIT, ENCFF643CGH 4462110060 ENCODE Processing Pipeline 028e53be96544483181701dd4e44d9a7 https://www.encodeproject.org/files/ENCFF926PJS/@@download/ENCFF926PJS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF358SSM bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIQ, ENCFF002EIT, ENCFF643CGH 3287600249 ENCODE Processing Pipeline 0470c97946bea35dbbbfd42b68f36c14 https://www.encodeproject.org/files/ENCFF358SSM/@@download/ENCFF358SSM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF465XCK bam unfiltered alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIN, ENCFF002EIS, ENCFF643CGH 4360466890 ENCODE Processing Pipeline ec2c25b7385894d74f8253acc9489eca https://www.encodeproject.org/files/ENCFF465XCK/@@download/ENCFF465XCK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF405YCF bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIN, ENCFF002EIS, ENCFF643CGH 3135017651 ENCODE Processing Pipeline 52da047f4e217c9718fcec9a4439a2a3 https://www.encodeproject.org/files/ENCFF405YCF/@@download/ENCFF405YCF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF929PXN bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF405YCF, ENCFF910IKB 998115846 ENCODE Processing Pipeline 901dfa81bfc5e0ac44227144cb3151b8 https://www.encodeproject.org/files/ENCFF929PXN/@@download/ENCFF929PXN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF539HIH bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF358SSM 1028403712 ENCODE Processing Pipeline 3c1bfd83ddce9010eeecc2f7878548db https://www.encodeproject.org/files/ENCFF539HIH/@@download/ENCFF539HIH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF425YFW bigWig signal p-value ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF358SSM, ENCFF405YCF, ENCFF910IKB 1672832762 ENCODE Processing Pipeline a58ded6a0c79091f9e620c53babf5a30 https://www.encodeproject.org/files/ENCFF425YFW/@@download/ENCFF425YFW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF736NLT bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF405YCF, ENCFF910IKB 1061633812 ENCODE Processing Pipeline 615c02c448eaf003abfc18b56d194938 https://www.encodeproject.org/files/ENCFF736NLT/@@download/ENCFF736NLT.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF465AKJ bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF358SSM 1037643626 ENCODE Processing Pipeline d15bf4c9aee3e049ee19a015dd6bf547 https://www.encodeproject.org/files/ENCFF465AKJ/@@download/ENCFF465AKJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF562ERQ bed narrowPeak conservative idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF493XGB, ENCFF853PDJ, ENCFF874WMJ 257860 ENCODE Processing Pipeline 1819aaf3bf659ffcfa220d60672385e9 https://www.encodeproject.org/files/ENCFF562ERQ/@@download/ENCFF562ERQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF289ORB bigBed narrowPeak optimal idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF566HGU 958228 ENCODE Processing Pipeline 6307b3af0677664ab6465234d5a6db7f https://www.encodeproject.org/files/ENCFF289ORB/@@download/ENCFF289ORB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF674MNP bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF853PDJ 13323977 ENCODE Processing Pipeline 88ea3762ff83c5c04e6721cdb65fe796 https://www.encodeproject.org/files/ENCFF674MNP/@@download/ENCFF674MNP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF853PDJ bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF405YCF, ENCFF910IKB 6590433 ENCODE Processing Pipeline 1068151e1afa24764c290fdb7f791b11 https://www.encodeproject.org/files/ENCFF853PDJ/@@download/ENCFF853PDJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF874WMJ bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF227IZS, ENCFF358SSM 6867148 ENCODE Processing Pipeline 98372b3bd268a11c54fd4aeefaf312e7 https://www.encodeproject.org/files/ENCFF874WMJ/@@download/ENCFF874WMJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF493XGB bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF358SSM, ENCFF405YCF, ENCFF910IKB 7243087 ENCODE Processing Pipeline e0d0b90c894cc3e8094717102e077822 https://www.encodeproject.org/files/ENCFF493XGB/@@download/ENCFF493XGB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF347RWX bigWig fold change over control ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF227IZS, ENCFF358SSM, ENCFF405YCF, ENCFF910IKB 1933884851 ENCODE Processing Pipeline 51a0eba2751d854f9fd640f222399f65 https://www.encodeproject.org/files/ENCFF347RWX/@@download/ENCFF347RWX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF558YCI bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF874WMJ 13104773 ENCODE Processing Pipeline 2ad3cd84d5c7901ebf09c33d06730682 https://www.encodeproject.org/files/ENCFF558YCI/@@download/ENCFF558YCI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF566HGU bed narrowPeak optimal idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF493XGB, ENCFF853PDJ, ENCFF874WMJ 409522 ENCODE Processing Pipeline 8ac2d34f8435e5c7c7cb81889c5f2479 https://www.encodeproject.org/files/ENCFF566HGU/@@download/ENCFF566HGU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF844YAH bigBed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF493XGB 13038101 ENCODE Processing Pipeline 5939132d2640701f931fbaf16d58d71c https://www.encodeproject.org/files/ENCFF844YAH/@@download/ENCFF844YAH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF708QJH bigBed narrowPeak conservative idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF562ERQ 562613 ENCODE Processing Pipeline 0bdc10b487839b308028359e70526306 https://www.encodeproject.org/files/ENCFF708QJH/@@download/ENCFF708QJH.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF540XNJ bigBed narrowPeak conservative idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF313FMB 403067 ENCODE Processing Pipeline 2c8f2161178274ba0a208b371aef9937 https://www.encodeproject.org/files/ENCFF540XNJ/@@download/ENCFF540XNJ.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF708GFU bed narrowPeak optimal idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF596CWP, ENCFF719MEC, ENCFF893FDT 344465 ENCODE Processing Pipeline a0e276147e2f327c48369ebaaa3944d4 https://www.encodeproject.org/files/ENCFF708GFU/@@download/ENCFF708GFU.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF683UMP bigBed narrowPeak optimal idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF708GFU 701087 ENCODE Processing Pipeline 4dccb2b2a9c3b83184db0d86a65be8a9 https://www.encodeproject.org/files/ENCFF683UMP/@@download/ENCFF683UMP.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF313FMB bed narrowPeak conservative idr thresholded peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF596CWP, ENCFF719MEC, ENCFF893FDT 213384 ENCODE Processing Pipeline 61759af3e1d69abfdeac2cfa492f2e80 https://www.encodeproject.org/files/ENCFF313FMB/@@download/ENCFF313FMB.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF831GLK bam unfiltered alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF164ZCN, ENCFF807MUK 2312904302 ENCODE Processing Pipeline 1535ac49ee3467a030c6930071ad3104 https://www.encodeproject.org/files/ENCFF831GLK/@@download/ENCFF831GLK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF249MNV bam unfiltered alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF671BGZ, ENCFF807MUK 2450253861 ENCODE Processing Pipeline aa660232241eb69003c1a0e544093023 https://www.encodeproject.org/files/ENCFF249MNV/@@download/ENCFF249MNV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF164ZCN fastq reads ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 1 50 single-ended 2350469488 Richard Myers, HAIB 6d9c13e0c8526c275d0281d75b3038d2 SRA:SRR5331454 https://www.encodeproject.org/files/ENCFF164ZCN/@@download/ENCFF164ZCN.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JYK/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF671BGZ fastq reads ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 1 50 single-ended 2535728589 Richard Myers, HAIB 87befb7d0597a866b769b88f6562d334 SRA:SRR5331455 https://www.encodeproject.org/files/ENCFF671BGZ/@@download/ENCFF671BGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF158AFC/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF270HZT bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF671BGZ, ENCFF807MUK 1747599538 ENCODE Processing Pipeline 816f9a1b387b2952975006ca0f90432e https://www.encodeproject.org/files/ENCFF270HZT/@@download/ENCFF270HZT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF821FIW bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF164ZCN, ENCFF807MUK 1641032399 ENCODE Processing Pipeline 07f769a64523a51a2c435aa8e035c9e6 https://www.encodeproject.org/files/ENCFF821FIW/@@download/ENCFF821FIW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF190PTX bigWig signal p-value ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 1122566023 ENCODE Processing Pipeline 9abe724c97bcc1c11096c3fa5db4a4b2 https://www.encodeproject.org/files/ENCFF190PTX/@@download/ENCFF190PTX.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF976JHF bigWig signal p-value ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF270HZT, ENCFF359TIO 691088379 ENCODE Processing Pipeline 9793f2ac913b28e0fddd04b69cc60485 https://www.encodeproject.org/files/ENCFF976JHF/@@download/ENCFF976JHF.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF227CPQ bigWig signal p-value ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF270HZT, ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 1397141955 ENCODE Processing Pipeline e49b96598d23ba22d7ed7afe2743ca02 https://www.encodeproject.org/files/ENCFF227CPQ/@@download/ENCFF227CPQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF825RFZ bigWig fold change over control ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 1057291705 ENCODE Processing Pipeline 996d483df4b767d29a2eeab7c5ff5cbb https://www.encodeproject.org/files/ENCFF825RFZ/@@download/ENCFF825RFZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF702CLK bigWig fold change over control ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF270HZT, ENCFF359TIO 837435760 ENCODE Processing Pipeline 0d396dfd207b316abf3de0baec43eb52 https://www.encodeproject.org/files/ENCFF702CLK/@@download/ENCFF702CLK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF110WCE bigWig fold change over control ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF270HZT, ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 1636096643 ENCODE Processing Pipeline 1d6000c683d449db6691396d27cbc773 https://www.encodeproject.org/files/ENCFF110WCE/@@download/ENCFF110WCE.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF054NTL bigBed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF624XKD 13609636 ENCODE Processing Pipeline 0d729e6cd33ba9028cf6825b4231c7cd https://www.encodeproject.org/files/ENCFF054NTL/@@download/ENCFF054NTL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF624XKD bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF270HZT, ENCFF359TIO 6725905 ENCODE Processing Pipeline 3517b46ca96b254234976888869e2bfa https://www.encodeproject.org/files/ENCFF624XKD/@@download/ENCFF624XKD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF764GOO bigBed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF950LOX 13914415 ENCODE Processing Pipeline 07bbbb45d423786ae009c33e65a53bd5 https://www.encodeproject.org/files/ENCFF764GOO/@@download/ENCFF764GOO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF484NEU bigBed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF974XKH 13859177 ENCODE Processing Pipeline 83bb4de5fe1f00c4410c56e61c7b0a8b https://www.encodeproject.org/files/ENCFF484NEU/@@download/ENCFF484NEU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF950LOX bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 6769628 ENCODE Processing Pipeline 21664ea95b8533ac6d45884f5355a655 https://www.encodeproject.org/files/ENCFF950LOX/@@download/ENCFF950LOX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF974XKH bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF270HZT, ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 7031021 ENCODE Processing Pipeline def045c685301d24181ace0d3c24bcaf https://www.encodeproject.org/files/ENCFF974XKH/@@download/ENCFF974XKH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF051AWW bam unfiltered alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF643CGH, ENCFF671BGZ 2458233246 ENCODE Processing Pipeline 46016ddbe448ae767320d498237e3df3 https://www.encodeproject.org/files/ENCFF051AWW/@@download/ENCFF051AWW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF049UHF bam unfiltered alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF164ZCN, ENCFF643CGH 2321371815 ENCODE Processing Pipeline 0a619b46dc36531429981cd636d6faa0 https://www.encodeproject.org/files/ENCFF049UHF/@@download/ENCFF049UHF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF285HJN bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF643CGH, ENCFF671BGZ 1747536992 ENCODE Processing Pipeline 2f4e2f24d84aadf6b29e9edd46d03aec https://www.encodeproject.org/files/ENCFF285HJN/@@download/ENCFF285HJN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF232KLY bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF164ZCN, ENCFF643CGH 1641139028 ENCODE Processing Pipeline b400c4668e55cad178d5b47eb61c5aff https://www.encodeproject.org/files/ENCFF232KLY/@@download/ENCFF232KLY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF045SSF bigWig signal p-value ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF232KLY, ENCFF406XEH, ENCFF985NSN 1147870809 ENCODE Processing Pipeline d275302e0edb3e33294f8a984c026c8c https://www.encodeproject.org/files/ENCFF045SSF/@@download/ENCFF045SSF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF898ZZX bigWig signal p-value ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF285HJN, ENCFF985NSN 691773453 ENCODE Processing Pipeline ec236de64adade90cca6e963619c611a https://www.encodeproject.org/files/ENCFF898ZZX/@@download/ENCFF898ZZX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF228PIN bigWig fold change over control ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF232KLY, ENCFF406XEH, ENCFF985NSN 1064413248 ENCODE Processing Pipeline c0bcbe1128d2884cb3a02eb9511ec9a3 https://www.encodeproject.org/files/ENCFF228PIN/@@download/ENCFF228PIN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF181VIB bigWig signal p-value ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF232KLY, ENCFF285HJN, ENCFF406XEH, ENCFF985NSN 1397158876 ENCODE Processing Pipeline 204a9658eec4b01c2e620cadc4180e9b https://www.encodeproject.org/files/ENCFF181VIB/@@download/ENCFF181VIB.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF647UGS bigWig fold change over control ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF285HJN, ENCFF985NSN 838184219 ENCODE Processing Pipeline cd03837fb25c799d3a3325130035f6cc https://www.encodeproject.org/files/ENCFF647UGS/@@download/ENCFF647UGS.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF299FAH bigWig fold change over control ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF232KLY, ENCFF285HJN, ENCFF406XEH, ENCFF985NSN 1637123436 ENCODE Processing Pipeline 36994fb0390bc07e7ec5da41d1f9134b https://www.encodeproject.org/files/ENCFF299FAH/@@download/ENCFF299FAH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF443IDR bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF285HJN, ENCFF985NSN 6672648 ENCODE Processing Pipeline fe13414f179477a815c1947e97056d91 https://www.encodeproject.org/files/ENCFF443IDR/@@download/ENCFF443IDR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF650YEI bigBed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF063UKS 13866185 ENCODE Processing Pipeline d938dff13953036f15c6b3e0aabfae7b https://www.encodeproject.org/files/ENCFF650YEI/@@download/ENCFF650YEI.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF236MJY bigBed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF443IDR 13647254 ENCODE Processing Pipeline e81280a68c269c28d14b6e9437b3f62a https://www.encodeproject.org/files/ENCFF236MJY/@@download/ENCFF236MJY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF645KBN bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF232KLY, ENCFF406XEH, ENCFF985NSN 6664069 ENCODE Processing Pipeline 2c2692aae326fb63907f4e88fe4192e8 https://www.encodeproject.org/files/ENCFF645KBN/@@download/ENCFF645KBN.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF063UKS bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF232KLY, ENCFF285HJN, ENCFF406XEH, ENCFF985NSN 7006170 ENCODE Processing Pipeline c355acfb2ad3833e93f0a8d2a6ccb170 https://www.encodeproject.org/files/ENCFF063UKS/@@download/ENCFF063UKS.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF060AKT bigBed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF645KBN 13887716 ENCODE Processing Pipeline e8d9866ff27120ef2b724c99273216ee https://www.encodeproject.org/files/ENCFF060AKT/@@download/ENCFF060AKT.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF556AEV bed narrowPeak conservative idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF063UKS, ENCFF419RSJ, ENCFF443IDR, ENCFF645KBN 1343745 ENCODE Processing Pipeline aeaaf3f4e37b3a66c6d71e39b1873a98 https://www.encodeproject.org/files/ENCFF556AEV/@@download/ENCFF556AEV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF197VVF bigBed narrowPeak conservative idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF556AEV 2570981 ENCODE Processing Pipeline 5b0253335a4a68e973bc20095b65e169 https://www.encodeproject.org/files/ENCFF197VVF/@@download/ENCFF197VVF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF295GOD bed narrowPeak optimal idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF063UKS, ENCFF419RSJ, ENCFF443IDR, ENCFF645KBN 1457715 ENCODE Processing Pipeline e50fba920f9d445b01aa16efa5c27456 https://www.encodeproject.org/files/ENCFF295GOD/@@download/ENCFF295GOD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF244GNC bigBed narrowPeak optimal idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF295GOD 2732955 ENCODE Processing Pipeline 9b9ec93edc528b3639e8db3ecba25b50 https://www.encodeproject.org/files/ENCFF244GNC/@@download/ENCFF244GNC.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF427XJF bed narrowPeak conservative idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF624XKD, ENCFF950LOX, ENCFF974XKH 1236524 ENCODE Processing Pipeline cd97d1218ea41666662d2c659846cca5 https://www.encodeproject.org/files/ENCFF427XJF/@@download/ENCFF427XJF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF718RZO bigBed narrowPeak conservative idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF427XJF 2405940 ENCODE Processing Pipeline 16e07e2c594458ca35f8385cdce8a3a9 https://www.encodeproject.org/files/ENCFF718RZO/@@download/ENCFF718RZO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF708GMO bed narrowPeak optimal idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF001TDO, ENCFF624XKD, ENCFF950LOX, ENCFF974XKH 1336347 ENCODE Processing Pipeline 7e9fff1df0984cd791bec85be62f671a https://www.encodeproject.org/files/ENCFF708GMO/@@download/ENCFF708GMO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF920XVN bigBed narrowPeak optimal idr thresholded peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1, 2 ENCFF708GMO 2537026 ENCODE Processing Pipeline e2f713ada7983d310b5ba9467d8f5e81 https://www.encodeproject.org/files/ENCFF920XVN/@@download/ENCFF920XVN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF000NKU bigBed broadPeak peaks ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TUN 173932 Richard Myers, HAIB 9c8e88a62f97656c051237cddcfe8b86 https://www.encodeproject.org/files/ENCFF000NKU/@@download/ENCFF000NKU.bigBed hg19 released biological replicates with identical biosample ENCFF000NKV bigBed broadPeak peaks ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TUO 190289 Richard Myers, HAIB 2073e6ecdd44c7d3faff3f09ad622c27 https://www.encodeproject.org/files/ENCFF000NKV/@@download/ENCFF000NKV.bigBed hg19 released biological replicates with identical biosample ENCFF000NKW bam alignments ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NLO 1644510091 Richard Myers, HAIB e1a544cdb8de8f399e05cab0157e97d2 https://www.encodeproject.org/files/ENCFF000NKW/@@download/ENCFF000NKW.bam hg19 released biological replicates with identical biosample ENCFF000NKX bam alignments ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NLH 1461669146 Richard Myers, HAIB 2a2722274d0408e5db0e4e4d7bfd189e https://www.encodeproject.org/files/ENCFF000NKX/@@download/ENCFF000NKX.bam hg19 released biological replicates with identical biosample ENCFF000NKY bigWig raw signal ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 226004528 Richard Myers, HAIB 3b88f62e392bfd5b8b8f10085cc00435 https://www.encodeproject.org/files/ENCFF000NKY/@@download/ENCFF000NKY.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NLA bigWig raw signal ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 140472590 Richard Myers, HAIB e96a7cc95a4171958a121b217285ad16 https://www.encodeproject.org/files/ENCFF000NLA/@@download/ENCFF000NLA.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NLH fastq reads ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1505871585 Richard Myers, HAIB 02dce3a0143c777ae32291cf888def4d https://www.encodeproject.org/files/ENCFF000NLH/@@download/ENCFF000NLH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NLO fastq reads ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1683928317 Richard Myers, HAIB 7d878e8e941349f65e9e525f5132a279 https://www.encodeproject.org/files/ENCFF000NLO/@@download/ENCFF000NLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TUN bed broadPeak peaks ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 82644 Richard Myers, HAIB 45e3c23a7b78c6afbcab24238c6dd5d2 https://www.encodeproject.org/files/ENCFF001TUN/@@download/ENCFF001TUN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TUO bed broadPeak peaks ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 91819 Richard Myers, HAIB c91a26c233acf4f13c8c9e53176541d9 https://www.encodeproject.org/files/ENCFF001TUO/@@download/ENCFF001TUO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NRC bam alignments ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRK 1093244046 Richard Myers, HAIB 5dd79f7d56e7f6d1002e892c508b5558 https://www.encodeproject.org/files/ENCFF000NRC/@@download/ENCFF000NRC.bam hg19 released biological replicates with identical biosample ENCFF000NRD bigBed broadPeak peaks ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVX 385619 Richard Myers, HAIB a3274d8a78d3768f1d7bfe19c703f8cb https://www.encodeproject.org/files/ENCFF000NRD/@@download/ENCFF000NRD.bigBed hg19 released biological replicates with identical biosample ENCFF000NRE bam alignments ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRQ 1462535158 Richard Myers, HAIB 3e26b244d51856fb8a626f80e3dcfec1 https://www.encodeproject.org/files/ENCFF000NRE/@@download/ENCFF000NRE.bam hg19 released biological replicates with identical biosample ENCFF000NRF bigBed broadPeak peaks ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVY 438882 Richard Myers, HAIB 54ad38ddf2ac8374db65b45d2d09924a https://www.encodeproject.org/files/ENCFF000NRF/@@download/ENCFF000NRF.bigBed hg19 released biological replicates with identical biosample ENCFF000NRG bigWig raw signal ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 156056155 Richard Myers, HAIB 0f2d2f9a0cf0fd22c5304f6af6afc116 https://www.encodeproject.org/files/ENCFF000NRG/@@download/ENCFF000NRG.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NRI bigWig raw signal ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 116149360 Richard Myers, HAIB b23e88f3e2b70dc44fd3f653a6bbddac https://www.encodeproject.org/files/ENCFF000NRI/@@download/ENCFF000NRI.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NRK fastq reads ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1119302858 Richard Myers, HAIB a7014d1ab48e3c77f07cd1ae0b75d6b9 https://www.encodeproject.org/files/ENCFF000NRK/@@download/ENCFF000NRK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NRQ fastq reads ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1497882733 Richard Myers, HAIB d84c67e0ac920da3f797590c5291be6f https://www.encodeproject.org/files/ENCFF000NRQ/@@download/ENCFF000NRQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVX bed broadPeak peaks ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 197536 Richard Myers, HAIB 6789df2390fee063ae219e48724d1485 https://www.encodeproject.org/files/ENCFF001TVX/@@download/ENCFF001TVX.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVY bed broadPeak peaks ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 237511 Richard Myers, HAIB 55eb54ef7e973d49c799a81414934f8b https://www.encodeproject.org/files/ENCFF001TVY/@@download/ENCFF001TVY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OHP bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OIB 479060918 Richard Myers, HAIB aeafdeca34afeffba7970d1746437b81 https://www.encodeproject.org/files/ENCFF000OHP/@@download/ENCFF000OHP.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OHQ bigBed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZS 164881 Richard Myers, HAIB addc255cb05c9587d8f63723001a1543 https://www.encodeproject.org/files/ENCFF000OHQ/@@download/ENCFF000OHQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OHR bigBed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZT 475943 Richard Myers, HAIB 00d50fcdff20f233f40e478a1772ee7e https://www.encodeproject.org/files/ENCFF000OHR/@@download/ENCFF000OHR.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OHS bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OIE 741625516 Richard Myers, HAIB 41936268d35e86c7edb054d88542c8ba https://www.encodeproject.org/files/ENCFF000OHS/@@download/ENCFF000OHS.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OHT bigWig raw signal ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 6672649 Richard Myers, HAIB 4ee644a2426b5ae4c37767e81a3c825c https://www.encodeproject.org/files/ENCFF000OHT/@@download/ENCFF000OHT.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OHU bigWig raw signal ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 20000956 Richard Myers, HAIB 1e5f5ade2f0529d8f72298f5d628f582 https://www.encodeproject.org/files/ENCFF000OHU/@@download/ENCFF000OHU.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OIB fastq reads ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 571352763 Richard Myers, HAIB 5dc738136b4ecc6ce3db30c63a8f987b https://www.encodeproject.org/files/ENCFF000OIB/@@download/ENCFF000OIB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000OIE fastq reads ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 782209934 Richard Myers, HAIB 1bba39d4458baccdb45aa7ecf7bea311 https://www.encodeproject.org/files/ENCFF000OIE/@@download/ENCFF000OIE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF001TZS bed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 1 64292 Richard Myers, HAIB bde546f3725cdeb643ced0ea1d1c4fb5 https://www.encodeproject.org/files/ENCFF001TZS/@@download/ENCFF001TZS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF001TZT bed broadPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 1 269459 Richard Myers, HAIB b6c9a338395cfb186dda4f6c240ab5fd https://www.encodeproject.org/files/ENCFF001TZT/@@download/ENCFF001TZT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF002CIE bed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 96309 ENCODE Consortium Analysis Working Group 8f01b8a623b959caa7f7e25876808635 https://www.encodeproject.org/files/ENCFF002CIE/@@download/ENCFF002CIE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF961WXK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIE 247605 ENCODE Consortium f3ea68cd797ea2633b5bd889341e494d https://www.encodeproject.org/files/ENCFF961WXK/@@download/ENCFF961WXK.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF039NYP bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF643CGH 677582740 ENCODE Processing Pipeline d3d9af71c2c46f2f96a4673184c9837b https://www.encodeproject.org/files/ENCFF039NYP/@@download/ENCFF039NYP.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF272BAG bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF643CGH 931234395 ENCODE Processing Pipeline 1e851ced9b5f21f5ea211fc0e4a09689 https://www.encodeproject.org/files/ENCFF272BAG/@@download/ENCFF272BAG.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF425FSK bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF643CGH 210995610 ENCODE Processing Pipeline 31e609780d8b4c2d7a456e1d5818a461 https://www.encodeproject.org/files/ENCFF425FSK/@@download/ENCFF425FSK.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF582LPW bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF643CGH 295221415 ENCODE Processing Pipeline 8d408f44ec95c35ee6e7edf8df7fa6a3 https://www.encodeproject.org/files/ENCFF582LPW/@@download/ENCFF582LPW.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF390ZIU bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF807MUK 676248749 ENCODE Processing Pipeline a3495417896b5896afc3219580c61066 https://www.encodeproject.org/files/ENCFF390ZIU/@@download/ENCFF390ZIU.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF287GUR bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF807MUK 209093780 ENCODE Processing Pipeline d6fb4df0de636dfbac8058a69765e455 https://www.encodeproject.org/files/ENCFF287GUR/@@download/ENCFF287GUR.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF843JHA bam unfiltered alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF807MUK 931165044 ENCODE Processing Pipeline 3fb714c8977bfda02658acc43f80b84b https://www.encodeproject.org/files/ENCFF843JHA/@@download/ENCFF843JHA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF013JXB bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF807MUK 292034579 ENCODE Processing Pipeline 537f61b5912a744a8afca0b6239fdd0e https://www.encodeproject.org/files/ENCFF013JXB/@@download/ENCFF013JXB.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF727SXD bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF582LPW 386676570 ENCODE Processing Pipeline d82bea85edcea33ef3abd4bd9f84b820 https://www.encodeproject.org/files/ENCFF727SXD/@@download/ENCFF727SXD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF589JAE bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425FSK, ENCFF562HPN 131823374 ENCODE Processing Pipeline b42c16a4c1ac1bb8d132682cfbd49d13 https://www.encodeproject.org/files/ENCFF589JAE/@@download/ENCFF589JAE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF382FYC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF204LCG 297434 ENCODE Processing Pipeline a37874c46f7df9c7789ed731a5a413a4 https://www.encodeproject.org/files/ENCFF382FYC/@@download/ENCFF382FYC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF315YFI bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425FSK, ENCFF562HPN 385923963 ENCODE Processing Pipeline 42c7444a25a295230a72758db81ddf6f https://www.encodeproject.org/files/ENCFF315YFI/@@download/ENCFF315YFI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF292CDL bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425FSK, ENCFF562HPN, ENCFF582LPW 277128284 ENCODE Processing Pipeline 37b1e1dfab51e57ca643534393c3873a https://www.encodeproject.org/files/ENCFF292CDL/@@download/ENCFF292CDL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF264KYF bed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MSV, ENCFF575AYZ, ENCFF756DWW 73920 ENCODE Processing Pipeline 20d3c705e3876667241b8fcf18ed4d4c https://www.encodeproject.org/files/ENCFF264KYF/@@download/ENCFF264KYF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF558ZRB bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425FSK, ENCFF562HPN, ENCFF582LPW 413206044 ENCODE Processing Pipeline 0844e5dd5a44fbacac842e9b48250962 https://www.encodeproject.org/files/ENCFF558ZRB/@@download/ENCFF558ZRB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF290ZCR bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF582LPW 177228118 ENCODE Processing Pipeline 23a3890bb7adac1ab73ab6fbaf97cb96 https://www.encodeproject.org/files/ENCFF290ZCR/@@download/ENCFF290ZCR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF500MSV bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562HPN, ENCFF582LPW 4300254 ENCODE Processing Pipeline d3c92dda4b9d0ceb000f221d96147c96 https://www.encodeproject.org/files/ENCFF500MSV/@@download/ENCFF500MSV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF950JGB bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF756DWW 10585475 ENCODE Processing Pipeline 12d6a6a54994eef88ec6bfdbdb5f26c0 https://www.encodeproject.org/files/ENCFF950JGB/@@download/ENCFF950JGB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF204LCG bed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MSV, ENCFF575AYZ, ENCFF756DWW 128551 ENCODE Processing Pipeline 2d4f6f01796a7391c0c2b82e725c8f45 https://www.encodeproject.org/files/ENCFF204LCG/@@download/ENCFF204LCG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF575AYZ bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425FSK, ENCFF562HPN 1637706 ENCODE Processing Pipeline 5325688cdef02e397e3f0892bc20cf0e https://www.encodeproject.org/files/ENCFF575AYZ/@@download/ENCFF575AYZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF785XKO bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF575AYZ 3654565 ENCODE Processing Pipeline ca277861d1cc4ade5c66d5748d92c147 https://www.encodeproject.org/files/ENCFF785XKO/@@download/ENCFF785XKO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF212GWZ bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF500MSV 9822845 ENCODE Processing Pipeline 60f68146a59844d03aae018ec4c357bb https://www.encodeproject.org/files/ENCFF212GWZ/@@download/ENCFF212GWZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF401FYN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF264KYF 174982 ENCODE Processing Pipeline e63c294a0e1a169b4a96bcd5828468ec https://www.encodeproject.org/files/ENCFF401FYN/@@download/ENCFF401FYN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF756DWW bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425FSK, ENCFF562HPN, ENCFF582LPW 4812746 ENCODE Processing Pipeline ee6327cf5e29f4cd7d4cd779e3d781fc https://www.encodeproject.org/files/ENCFF756DWW/@@download/ENCFF756DWW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF413OIV bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 131468412 ENCODE Processing Pipeline 0a74c9773954550d9a4a955145c68ca1 https://www.encodeproject.org/files/ENCFF413OIV/@@download/ENCFF413OIV.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF167NPM bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF013JXB, ENCFF287GUR, ENCFF958RTR 276468858 ENCODE Processing Pipeline a752c5979a0bca0d44eac5fbd1b24b4e https://www.encodeproject.org/files/ENCFF167NPM/@@download/ENCFF167NPM.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF704LJZ bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 373717927 ENCODE Processing Pipeline 3dfbed70b031cc864e60e661ad675e2c https://www.encodeproject.org/files/ENCFF704LJZ/@@download/ENCFF704LJZ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF630HNB bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF013JXB, ENCFF287GUR, ENCFF958RTR 478581984 ENCODE Processing Pipeline 90f291ae97fc286157aae7d3dd02c4c3 https://www.encodeproject.org/files/ENCFF630HNB/@@download/ENCFF630HNB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF854TVA bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 1545002 ENCODE Processing Pipeline 05c2785006b632a687acc835696a4ad6 https://www.encodeproject.org/files/ENCFF854TVA/@@download/ENCFF854TVA.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF267NGA bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF723OVS 10627848 ENCODE Processing Pipeline 15f3bb8d21f96467af162d9dd05a04ac https://www.encodeproject.org/files/ENCFF267NGA/@@download/ENCFF267NGA.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF479ORW bigWig fold change over control ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 175798796 ENCODE Processing Pipeline 97f178ad2c393d67f96725db6da281d0 https://www.encodeproject.org/files/ENCFF479ORW/@@download/ENCFF479ORW.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF732PLA bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF066EAT 9965765 ENCODE Processing Pipeline 11f2f526d26a9af510499ad59fb9ef46 https://www.encodeproject.org/files/ENCFF732PLA/@@download/ENCFF732PLA.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF621OAS bed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF066EAT, ENCFF723OVS, ENCFF854TVA 68859 ENCODE Processing Pipeline 32b885f01b0590cf385232aa1872e37e https://www.encodeproject.org/files/ENCFF621OAS/@@download/ENCFF621OAS.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF997NGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF066EAT, ENCFF723OVS, ENCFF854TVA 126477 ENCODE Processing Pipeline 30a9b5ffb47654a81a0933837011f2b4 https://www.encodeproject.org/files/ENCFF997NGJ/@@download/ENCFF997NGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF024PWA bigWig signal p-value ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 351885792 ENCODE Processing Pipeline 6d9aff922c034976876db14d7c4e687b https://www.encodeproject.org/files/ENCFF024PWA/@@download/ENCFF024PWA.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF807LKR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF621OAS 168771 ENCODE Processing Pipeline b926ce9f2fc108b8410760c3bbfc9f25 https://www.encodeproject.org/files/ENCFF807LKR/@@download/ENCFF807LKR.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF066EAT bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 4364605 ENCODE Processing Pipeline f57fb1ee83f2c3375f280090ea2961a2 https://www.encodeproject.org/files/ENCFF066EAT/@@download/ENCFF066EAT.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF723OVS bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF013JXB, ENCFF287GUR, ENCFF958RTR 4873933 ENCODE Processing Pipeline 4d1dfff14be89ebee2669a999ae0889d https://www.encodeproject.org/files/ENCFF723OVS/@@download/ENCFF723OVS.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF731LCP bigBed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF854TVA 2752019 ENCODE Processing Pipeline dcf981f7ee4a9e8ba6dd24b2fea76925 https://www.encodeproject.org/files/ENCFF731LCP/@@download/ENCFF731LCP.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF492JSO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF997NGJ 295349 ENCODE Processing Pipeline ddf74a8c6194a92340c2f3e2bbfb5740 https://www.encodeproject.org/files/ENCFF492JSO/@@download/ENCFF492JSO.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF684UVH fastq reads ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF466DJP 2389082508 Michael Snyder, Stanford 8a9a72e6ac11a7cfa03171963e1d1753 https://www.encodeproject.org/files/ENCFF684UVH/@@download/ENCFF684UVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF466DJP fastq reads ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF684UVH 2403324263 Michael Snyder, Stanford a465311f7fbc8b575977cbd32c7f83e2 https://www.encodeproject.org/files/ENCFF466DJP/@@download/ENCFF466DJP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF685BPQ bam unfiltered alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF466DJP, ENCFF643CGH, ENCFF684UVH 5296617407 ENCODE Processing Pipeline 06ef5ce2ca34d96a6f7e21410c287e49 https://www.encodeproject.org/files/ENCFF685BPQ/@@download/ENCFF685BPQ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF607OXC bam unfiltered alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF466DJP, ENCFF684UVH, ENCFF807MUK 5292838432 ENCODE Processing Pipeline 0b8a5ea3dbcc87812f69fa29d9eee7f6 https://www.encodeproject.org/files/ENCFF607OXC/@@download/ENCFF607OXC.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF426PHO bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF466DJP, ENCFF684UVH, ENCFF807MUK 4394601980 ENCODE Processing Pipeline 3ca01d3c4067b97e6d675ae6b836555b https://www.encodeproject.org/files/ENCFF426PHO/@@download/ENCFF426PHO.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF592CBW bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF466DJP, ENCFF643CGH, ENCFF684UVH 4397087284 ENCODE Processing Pipeline d794289cca7d48b3ac46003c64dba2d2 https://www.encodeproject.org/files/ENCFF592CBW/@@download/ENCFF592CBW.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF975UAH bigWig signal p-value ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF426PHO 1390677768 ENCODE Processing Pipeline d0e4ac0e500ebf1f887ae32ad3e3028a https://www.encodeproject.org/files/ENCFF975UAH/@@download/ENCFF975UAH.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF955MGU bigWig fold change over control ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF592CBW 1367557739 ENCODE Processing Pipeline c9b549d3801f13ef209c180922abce11 https://www.encodeproject.org/files/ENCFF955MGU/@@download/ENCFF955MGU.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF498ETB bigWig fold change over control ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF426PHO 1385554494 ENCODE Processing Pipeline 17ec526967b132c1fec48785fa7663ee https://www.encodeproject.org/files/ENCFF498ETB/@@download/ENCFF498ETB.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF438SAQ bigWig signal p-value ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF592CBW 1217913708 ENCODE Processing Pipeline bfc82e58d82cadd1486210ff3e92bfb3 https://www.encodeproject.org/files/ENCFF438SAQ/@@download/ENCFF438SAQ.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF195IMF bigBed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF938APS 11389067 ENCODE Processing Pipeline d92d354dfd478192deb8a28013623d52 https://www.encodeproject.org/files/ENCFF195IMF/@@download/ENCFF195IMF.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF799KEV bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF426PHO 6404269 ENCODE Processing Pipeline ec054a982908f6f64d45286319ea3d6d https://www.encodeproject.org/files/ENCFF799KEV/@@download/ENCFF799KEV.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF240WLP bigBed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF799KEV 11380351 ENCODE Processing Pipeline 37aaead5efba7598ae57b99db7c31419 https://www.encodeproject.org/files/ENCFF240WLP/@@download/ENCFF240WLP.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF091LWB bam unfiltered alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF140JKY, ENCFF691JKH, ENCFF807MUK 6589761922 ENCODE Processing Pipeline bbf8c67c8ebbbac49907494f9466c0cc https://www.encodeproject.org/files/ENCFF091LWB/@@download/ENCFF091LWB.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF256BSJ bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF140JKY, ENCFF691JKH, ENCFF807MUK 5653693338 ENCODE Processing Pipeline 0f6363e57e6b0bc68d925a4228b8840b https://www.encodeproject.org/files/ENCFF256BSJ/@@download/ENCFF256BSJ.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF945HYL bam unfiltered alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF140JKY, ENCFF643CGH, ENCFF691JKH 6598860026 ENCODE Processing Pipeline d07dfea01faec516000311bb2effe021 https://www.encodeproject.org/files/ENCFF945HYL/@@download/ENCFF945HYL.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF691JKH fastq reads ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF140JKY 3043495884 Michael Snyder, Stanford 1696be088919917a20aef5297f829104 https://www.encodeproject.org/files/ENCFF691JKH/@@download/ENCFF691JKH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF140JKY fastq reads ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF691JKH 3464860977 Michael Snyder, Stanford 73ba6aa9dead00105a51725973cd411f https://www.encodeproject.org/files/ENCFF140JKY/@@download/ENCFF140JKY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF688KOP bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF140JKY, ENCFF643CGH, ENCFF691JKH 5652570111 ENCODE Processing Pipeline 0866e74813a29ccfe661ff791fb5529f https://www.encodeproject.org/files/ENCFF688KOP/@@download/ENCFF688KOP.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF212OTJ bigWig signal p-value ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF688KOP 1293940667 ENCODE Processing Pipeline 61a89b3d6aeec4c24520f314b2de2f14 https://www.encodeproject.org/files/ENCFF212OTJ/@@download/ENCFF212OTJ.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF218PCQ bigWig signal p-value ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF256BSJ 1495186168 ENCODE Processing Pipeline 84828460711f95dbcc0fc8d8b2124792 https://www.encodeproject.org/files/ENCFF218PCQ/@@download/ENCFF218PCQ.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF991WBW bigWig signal p-value ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF592CBW, ENCFF688KOP 2014633450 ENCODE Processing Pipeline 36b7c7a5562664b3dc34785fa9fcede1 https://www.encodeproject.org/files/ENCFF991WBW/@@download/ENCFF991WBW.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF098UEM bigWig signal p-value ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF256BSJ, ENCFF426PHO 1988262797 ENCODE Processing Pipeline f2dee86c85c67fcd418d52e903187de9 https://www.encodeproject.org/files/ENCFF098UEM/@@download/ENCFF098UEM.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF042JCH bigWig fold change over control ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF688KOP 1463223871 ENCODE Processing Pipeline 0961957dc8226a646e224f873bef39be https://www.encodeproject.org/files/ENCFF042JCH/@@download/ENCFF042JCH.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF633GOE bigWig fold change over control ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF256BSJ 1461096520 ENCODE Processing Pipeline e997675f7f88b7e315027367854a6265 https://www.encodeproject.org/files/ENCFF633GOE/@@download/ENCFF633GOE.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF409XWM bigBed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF439ZDA 11406546 ENCODE Processing Pipeline cd3461d7a524a1c1ca689e55f17f74cf https://www.encodeproject.org/files/ENCFF409XWM/@@download/ENCFF409XWM.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF034GAS bigBed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF288NOF 11291844 ENCODE Processing Pipeline d5436cf93d30717b5cdfa98f6f9ed9b7 https://www.encodeproject.org/files/ENCFF034GAS/@@download/ENCFF034GAS.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF288NOF bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF592CBW, ENCFF688KOP 7192286 ENCODE Processing Pipeline 2320b5ad7204d9fa88b253183a0e9eb5 https://www.encodeproject.org/files/ENCFF288NOF/@@download/ENCFF288NOF.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF904ANO bed narrowPeak optimal idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF288NOF, ENCFF419RSJ, ENCFF439ZDA, ENCFF938APS 199678 ENCODE Processing Pipeline fb7c2e593808193470892135eb935b38 https://www.encodeproject.org/files/ENCFF904ANO/@@download/ENCFF904ANO.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF439ZDA bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF688KOP 6320499 ENCODE Processing Pipeline 62ffa61209022ca29425fd03295b20ed https://www.encodeproject.org/files/ENCFF439ZDA/@@download/ENCFF439ZDA.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF427LVI bigWig fold change over control ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF256BSJ, ENCFF426PHO 1997358459 ENCODE Processing Pipeline a2b02fd68eb2399875d1bbdc8e1e1bd2 https://www.encodeproject.org/files/ENCFF427LVI/@@download/ENCFF427LVI.bigWig hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF146BUS bigWig fold change over control ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF592CBW, ENCFF688KOP 2024328393 ENCODE Processing Pipeline 05586779f4586d4e15c71aeaec18f63a https://www.encodeproject.org/files/ENCFF146BUS/@@download/ENCFF146BUS.bigWig GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF490RMX bed narrowPeak conservative idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF288NOF, ENCFF419RSJ, ENCFF439ZDA, ENCFF938APS 130323 ENCODE Processing Pipeline d607d4e139f807d5ba6f2fd24a7441f7 https://www.encodeproject.org/files/ENCFF490RMX/@@download/ENCFF490RMX.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF558UGO bigBed narrowPeak optimal idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF904ANO 413910 ENCODE Processing Pipeline 1cc4c4e5ddd42226554ddc31425504ce https://www.encodeproject.org/files/ENCFF558UGO/@@download/ENCFF558UGO.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF586DLG bigBed narrowPeak optimal idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF732OWQ 415648 ENCODE Processing Pipeline 87b04a188a35a3440f4b910f95b9f900 https://www.encodeproject.org/files/ENCFF586DLG/@@download/ENCFF586DLG.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF938APS bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF592CBW 6399788 ENCODE Processing Pipeline c4d8b18e0855106e36c1a7640adc6325 https://www.encodeproject.org/files/ENCFF938APS/@@download/ENCFF938APS.bed.gz GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF789DNP bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF256BSJ, ENCFF426PHO 7179202 ENCODE Processing Pipeline 06acab9747e5ca0235c0df203b8620d4 https://www.encodeproject.org/files/ENCFF789DNP/@@download/ENCFF789DNP.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF349MNI bigBed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF141TPZ 11400812 ENCODE Processing Pipeline 3dbddc9dd31c057065c2dbc620d5fd11 https://www.encodeproject.org/files/ENCFF349MNI/@@download/ENCFF349MNI.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF732OWQ bed narrowPeak optimal idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF141TPZ, ENCFF789DNP, ENCFF799KEV 201062 ENCODE Processing Pipeline 561f31317a694c35a659240423129976 https://www.encodeproject.org/files/ENCFF732OWQ/@@download/ENCFF732OWQ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF141TPZ bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF256BSJ 6328713 ENCODE Processing Pipeline 9be441f96818ed2d248c5cda0c55840c https://www.encodeproject.org/files/ENCFF141TPZ/@@download/ENCFF141TPZ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF694BDX bigBed narrowPeak conservative idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF490RMX 309869 ENCODE Processing Pipeline 3c29696d31de5b2d1e6db8b570aeab24 https://www.encodeproject.org/files/ENCFF694BDX/@@download/ENCFF694BDX.bigBed GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF308ALM bigBed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF789DNP 11288410 ENCODE Processing Pipeline fc5308c8ea9568aa31401a60fb629d48 https://www.encodeproject.org/files/ENCFF308ALM/@@download/ENCFF308ALM.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF432HRO bed narrowPeak conservative idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF141TPZ, ENCFF789DNP, ENCFF799KEV 129356 ENCODE Processing Pipeline c08247b27c38115e0aff8173b35aee66 https://www.encodeproject.org/files/ENCFF432HRO/@@download/ENCFF432HRO.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF458QCG bigBed narrowPeak conservative idr thresholded peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF432HRO 308132 ENCODE Processing Pipeline 781f5b2545bcb8854a234ec5e829fd95 https://www.encodeproject.org/files/ENCFF458QCG/@@download/ENCFF458QCG.bigBed hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF002ECK fastq reads ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 1 36 single-ended 908741774 Michael Snyder, Stanford 3ed2154584d99a36c4ebe820ca56223a SRA:SRR6212888 https://www.encodeproject.org/files/ENCFF002ECK/@@download/ENCFF002ECK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released low read length, antibody characterized with exemption ENCFF002ECI fastq reads ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 1 36 single-ended 1076221303 Michael Snyder, Stanford cb6d615a2cbd7ad665d2791b87d0c27b SRA:SRR6212887 https://www.encodeproject.org/files/ENCFF002ECI/@@download/ENCFF002ECI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released low read length, antibody characterized with exemption ENCFF782XEN bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECI, ENCFF643CGH 926648813 ENCODE Processing Pipeline 12c5b111013b5dc0039999aeafcb76be https://www.encodeproject.org/files/ENCFF782XEN/@@download/ENCFF782XEN.bam GRCh38 released low read length, antibody characterized with exemption ENCFF864QZM bam unfiltered alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECI, ENCFF643CGH 1311020111 ENCODE Processing Pipeline f028e6c868e5e772a3ab406db537137c https://www.encodeproject.org/files/ENCFF864QZM/@@download/ENCFF864QZM.bam GRCh38 released low read length, antibody characterized with exemption ENCFF969BOZ bam unfiltered alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECK, ENCFF807MUK 1287084457 ENCODE Processing Pipeline 6bdc206a4ec84929cce324317b240c5c https://www.encodeproject.org/files/ENCFF969BOZ/@@download/ENCFF969BOZ.bam hg19 released low read length, antibody characterized with exemption ENCFF731WRW bam unfiltered alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECK, ENCFF643CGH 1291338785 ENCODE Processing Pipeline 1179025f5ff8903c8d0b6c36cb1eb51b https://www.encodeproject.org/files/ENCFF731WRW/@@download/ENCFF731WRW.bam GRCh38 released low read length, antibody characterized with exemption ENCFF341ZOE bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECK, ENCFF643CGH 931325843 ENCODE Processing Pipeline 8166bce87f67d3f468aa62f1ac53d0d2 https://www.encodeproject.org/files/ENCFF341ZOE/@@download/ENCFF341ZOE.bam GRCh38 released low read length, antibody characterized with exemption ENCFF340PFJ bam unfiltered alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECI, ENCFF807MUK 1306121569 ENCODE Processing Pipeline 6354852cd7874f86b103a6cf1eaa123e https://www.encodeproject.org/files/ENCFF340PFJ/@@download/ENCFF340PFJ.bam hg19 released low read length, antibody characterized with exemption ENCFF764WTL bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECI, ENCFF807MUK 926912629 ENCODE Processing Pipeline 3fe9e1dbca03e580538346cb0e6f26e4 https://www.encodeproject.org/files/ENCFF764WTL/@@download/ENCFF764WTL.bam hg19 released low read length, antibody characterized with exemption ENCFF366XGP bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECK, ENCFF807MUK 931529385 ENCODE Processing Pipeline d08a438563d9cc648f521f4ae8d572f1 https://www.encodeproject.org/files/ENCFF366XGP/@@download/ENCFF366XGP.bam hg19 released low read length, antibody characterized with exemption ENCFF332HRJ bigWig signal p-value ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF366XGP, ENCFF650GFB 515098237 ENCODE Processing Pipeline ede6763b0304e7e5775cb15491e80c9c https://www.encodeproject.org/files/ENCFF332HRJ/@@download/ENCFF332HRJ.bigWig hg19 released low read length, antibody characterized with exemption ENCFF101KZR bigBed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF479KRR 13421488 ENCODE Processing Pipeline 722a377dbc3bf26075275f09aa7475bc https://www.encodeproject.org/files/ENCFF101KZR/@@download/ENCFF101KZR.bigBed hg19 released low read length, antibody characterized with exemption ENCFF512BUY bigBed narrowPeak optimal idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF814REB 1097035 ENCODE Processing Pipeline 79b660cf87acb5682aa6d236db5948fc https://www.encodeproject.org/files/ENCFF512BUY/@@download/ENCFF512BUY.bigBed hg19 released low read length, antibody characterized with exemption ENCFF221KRX bigWig fold change over control ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF650GFB, ENCFF764WTL 453677907 ENCODE Processing Pipeline 6789cef76c14fb902acceea06553c69d https://www.encodeproject.org/files/ENCFF221KRX/@@download/ENCFF221KRX.bigWig hg19 released low read length, antibody characterized with exemption ENCFF303WUY bigBed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF310CYQ 13266399 ENCODE Processing Pipeline 3c243820eb2a806e424e4eafa921679e https://www.encodeproject.org/files/ENCFF303WUY/@@download/ENCFF303WUY.bigBed hg19 released low read length, antibody characterized with exemption ENCFF115KTG bigWig signal p-value ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF650GFB, ENCFF764WTL 510161088 ENCODE Processing Pipeline 2e0bdd9919d11bad31c895de4820a08b https://www.encodeproject.org/files/ENCFF115KTG/@@download/ENCFF115KTG.bigWig hg19 released low read length, antibody characterized with exemption ENCFF213HSQ bigBed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF031DVG 13330315 ENCODE Processing Pipeline c9a69972bd9be62d0aa0bd6836b9656b https://www.encodeproject.org/files/ENCFF213HSQ/@@download/ENCFF213HSQ.bigBed hg19 released low read length, antibody characterized with exemption ENCFF462XJY bigWig signal p-value ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF366XGP, ENCFF650GFB, ENCFF764WTL 600290554 ENCODE Processing Pipeline 6de9477a8738aafd58083c4f299dac5c https://www.encodeproject.org/files/ENCFF462XJY/@@download/ENCFF462XJY.bigWig hg19 released low read length, antibody characterized with exemption ENCFF851MSB bigWig fold change over control ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF366XGP, ENCFF650GFB 453984954 ENCODE Processing Pipeline 691c2b6101bffb82d99ae0fdc5cbaca2 https://www.encodeproject.org/files/ENCFF851MSB/@@download/ENCFF851MSB.bigWig hg19 released low read length, antibody characterized with exemption ENCFF112BUP bigWig fold change over control ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF366XGP, ENCFF650GFB, ENCFF764WTL 780013013 ENCODE Processing Pipeline 5e0a958de32e9d5e15ffca2fba2fdc38 https://www.encodeproject.org/files/ENCFF112BUP/@@download/ENCFF112BUP.bigWig hg19 released low read length, antibody characterized with exemption ENCFF310CYQ bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF650GFB, ENCFF764WTL 5739985 ENCODE Processing Pipeline f0e8d29440d7babf6587f2fa8f009564 https://www.encodeproject.org/files/ENCFF310CYQ/@@download/ENCFF310CYQ.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF479KRR bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF366XGP, ENCFF650GFB 6012983 ENCODE Processing Pipeline cbcd47fed40f04880ccb0d8d69aff45b https://www.encodeproject.org/files/ENCFF479KRR/@@download/ENCFF479KRR.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF031DVG bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF366XGP, ENCFF650GFB, ENCFF764WTL 6504151 ENCODE Processing Pipeline 827cae15b891d8dcfe3540acca6c4a5f https://www.encodeproject.org/files/ENCFF031DVG/@@download/ENCFF031DVG.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF240IRK bed narrowPeak conservative idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF031DVG, ENCFF310CYQ, ENCFF479KRR 475939 ENCODE Processing Pipeline 652ea35fce1f87d3d5bb4c76cedbb4aa https://www.encodeproject.org/files/ENCFF240IRK/@@download/ENCFF240IRK.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF828CRX bigBed narrowPeak conservative idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF240IRK 1009724 ENCODE Processing Pipeline 363c0fc55cf7db27cc31ad3ae26c0258 https://www.encodeproject.org/files/ENCFF828CRX/@@download/ENCFF828CRX.bigBed hg19 released low read length, antibody characterized with exemption ENCFF814REB bed narrowPeak optimal idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF031DVG, ENCFF310CYQ, ENCFF479KRR 527913 ENCODE Processing Pipeline 02e8d555302bf4688d6bf86a850b6e8d https://www.encodeproject.org/files/ENCFF814REB/@@download/ENCFF814REB.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF248JMR bigWig signal p-value ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF449CRS, ENCFF782XEN 535811089 ENCODE Processing Pipeline 23fe6c7a49d6f54c7ad57f1466cd1e2f https://www.encodeproject.org/files/ENCFF248JMR/@@download/ENCFF248JMR.bigWig GRCh38 released low read length, antibody characterized with exemption ENCFF620JWG bigWig signal p-value ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF341ZOE, ENCFF449CRS 537893776 ENCODE Processing Pipeline 905544bd4468c9d891876b2d4a900876 https://www.encodeproject.org/files/ENCFF620JWG/@@download/ENCFF620JWG.bigWig GRCh38 released low read length, antibody characterized with exemption ENCFF618PTP bigWig fold change over control ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF449CRS, ENCFF782XEN 462007782 ENCODE Processing Pipeline cb758b8ed26484a9bf0bd77596ecc699 https://www.encodeproject.org/files/ENCFF618PTP/@@download/ENCFF618PTP.bigWig GRCh38 released low read length, antibody characterized with exemption ENCFF186HXY bigWig fold change over control ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF341ZOE, ENCFF449CRS 453219076 ENCODE Processing Pipeline 4750de1231d92e9f21a9b591a2e7f25b https://www.encodeproject.org/files/ENCFF186HXY/@@download/ENCFF186HXY.bigWig GRCh38 released low read length, antibody characterized with exemption ENCFF191WUI bigWig signal p-value ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF341ZOE, ENCFF449CRS, ENCFF782XEN 611516176 ENCODE Processing Pipeline b361f66bd7668047bf72154d9a9335d9 https://www.encodeproject.org/files/ENCFF191WUI/@@download/ENCFF191WUI.bigWig GRCh38 released low read length, antibody characterized with exemption ENCFF505ACR bigWig fold change over control ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF341ZOE, ENCFF449CRS, ENCFF782XEN 778030916 ENCODE Processing Pipeline ab22ca8ff598aa810a35adcb466870da https://www.encodeproject.org/files/ENCFF505ACR/@@download/ENCFF505ACR.bigWig GRCh38 released low read length, antibody characterized with exemption ENCFF973EXE bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF341ZOE, ENCFF449CRS 5781779 ENCODE Processing Pipeline 233a2e226bad0be1989bb0c300f7de75 https://www.encodeproject.org/files/ENCFF973EXE/@@download/ENCFF973EXE.bed.gz GRCh38 released low read length, antibody characterized with exemption ENCFF649YDF bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF449CRS, ENCFF782XEN 5563315 ENCODE Processing Pipeline 712e4b8ade99acce20e56e17054f8213 https://www.encodeproject.org/files/ENCFF649YDF/@@download/ENCFF649YDF.bed.gz GRCh38 released low read length, antibody characterized with exemption ENCFF930CNM bigBed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF649YDF 13213484 ENCODE Processing Pipeline 193d622df88a9aded837475a711109fe https://www.encodeproject.org/files/ENCFF930CNM/@@download/ENCFF930CNM.bigBed GRCh38 released low read length, antibody characterized with exemption ENCFF468VKV bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF341ZOE, ENCFF449CRS, ENCFF782XEN 6384019 ENCODE Processing Pipeline 6262598b125d52e82fe0511eafd43d7c https://www.encodeproject.org/files/ENCFF468VKV/@@download/ENCFF468VKV.bed.gz GRCh38 released low read length, antibody characterized with exemption ENCFF363DNQ bigBed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF973EXE 13362346 ENCODE Processing Pipeline 3f05d0d8efb605b007161eff4b581168 https://www.encodeproject.org/files/ENCFF363DNQ/@@download/ENCFF363DNQ.bigBed GRCh38 released low read length, antibody characterized with exemption ENCFF722SQR bigBed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF468VKV 13320067 ENCODE Processing Pipeline bcb6e42e3aa8664f595c1d965a7a1358 https://www.encodeproject.org/files/ENCFF722SQR/@@download/ENCFF722SQR.bigBed GRCh38 released low read length, antibody characterized with exemption ENCFF595VLA bed narrowPeak conservative idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF419RSJ, ENCFF468VKV, ENCFF649YDF, ENCFF973EXE 474825 ENCODE Processing Pipeline 124a5eceb18bcde8125a07e0ae111a25 https://www.encodeproject.org/files/ENCFF595VLA/@@download/ENCFF595VLA.bed.gz GRCh38 released low read length, antibody characterized with exemption ENCFF164EAR bigBed narrowPeak conservative idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF595VLA 1008800 ENCODE Processing Pipeline 8ce56dc81f9bdd41e5fdc00a9d53b5f4 https://www.encodeproject.org/files/ENCFF164EAR/@@download/ENCFF164EAR.bigBed GRCh38 released low read length, antibody characterized with exemption ENCFF073ADA bed narrowPeak optimal idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF419RSJ, ENCFF468VKV, ENCFF649YDF, ENCFF973EXE 533764 ENCODE Processing Pipeline fa149e85d69ca065e547339481e1e4f5 https://www.encodeproject.org/files/ENCFF073ADA/@@download/ENCFF073ADA.bed.gz GRCh38 released low read length, antibody characterized with exemption ENCFF696LHL bigBed narrowPeak optimal idr thresholded peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF073ADA 1106048 ENCODE Processing Pipeline c921642137171840ac6d6e85260b3e2a https://www.encodeproject.org/files/ENCFF696LHL/@@download/ENCFF696LHL.bigBed GRCh38 released low read length, antibody characterized with exemption ENCFF139RTA fastq reads ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 1 ENCFF538ENA 2180561069 Michael Snyder, Stanford c7ca09e9c1236f4141d80c2e8e35b0d4 https://www.encodeproject.org/files/ENCFF139RTA/@@download/ENCFF139RTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF538ENA fastq reads ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 1 101 paired-ended 2 ENCFF139RTA 2256073767 Michael Snyder, Stanford 0bc240d140da8a0598617500dc855745 https://www.encodeproject.org/files/ENCFF538ENA/@@download/ENCFF538ENA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF292BOV bam unfiltered alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF139RTA, ENCFF538ENA, ENCFF643CGH 4924204415 ENCODE Processing Pipeline 357b468c79ffc771fdf02436aaf3710d https://www.encodeproject.org/files/ENCFF292BOV/@@download/ENCFF292BOV.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF691KNW bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF139RTA, ENCFF538ENA, ENCFF643CGH 3845232246 ENCODE Processing Pipeline 6a9d4b79d8fc8ae8df9a295254dc95a8 https://www.encodeproject.org/files/ENCFF691KNW/@@download/ENCFF691KNW.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF212KZO bam unfiltered alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF139RTA, ENCFF538ENA, ENCFF807MUK 4921505271 ENCODE Processing Pipeline 7b7779898be81a7f2dc5436e42ee125f https://www.encodeproject.org/files/ENCFF212KZO/@@download/ENCFF212KZO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF994WEA bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF139RTA, ENCFF538ENA, ENCFF807MUK 3843778300 ENCODE Processing Pipeline 50f09be68deba3790c51614607c58a7a https://www.encodeproject.org/files/ENCFF994WEA/@@download/ENCFF994WEA.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF642FSZ bigWig signal p-value ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF994WEA 1340962687 ENCODE Processing Pipeline 4b2e4778a98811bf5526aed60bf4d3c2 https://www.encodeproject.org/files/ENCFF642FSZ/@@download/ENCFF642FSZ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF038NOC bigWig fold change over control ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF994WEA 1289871448 ENCODE Processing Pipeline b7d9d9c4f0e59cb7f45b368950cb7ffb https://www.encodeproject.org/files/ENCFF038NOC/@@download/ENCFF038NOC.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF663OPQ bigBed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF573ODA 11363766 ENCODE Processing Pipeline 850d84ca1ef1b9a5293bcbfdca8606e0 https://www.encodeproject.org/files/ENCFF663OPQ/@@download/ENCFF663OPQ.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF573ODA bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF994WEA 6178666 ENCODE Processing Pipeline d666cb4fc9d25a46db2cd949d4971301 https://www.encodeproject.org/files/ENCFF573ODA/@@download/ENCFF573ODA.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF822DCN bigWig signal p-value ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF691KNW 1374504179 ENCODE Processing Pipeline 0c245f26219f5c3cbd807afc9b3499da https://www.encodeproject.org/files/ENCFF822DCN/@@download/ENCFF822DCN.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF239YQT bigWig fold change over control ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF691KNW 1289706200 ENCODE Processing Pipeline e27b76b01022fba83b6e5dcaa7f5f08c https://www.encodeproject.org/files/ENCFF239YQT/@@download/ENCFF239YQT.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF538SUJ bigBed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF871ULY 11372770 ENCODE Processing Pipeline c9c6ca9bd3562b83a4fe02c4a85de383 https://www.encodeproject.org/files/ENCFF538SUJ/@@download/ENCFF538SUJ.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF899EWV bam unfiltered alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF491BNX, ENCFF643CGH, ENCFF815AHV 6012828732 ENCODE Processing Pipeline 7408c97f5f31142aa3628c57eb523595 https://www.encodeproject.org/files/ENCFF899EWV/@@download/ENCFF899EWV.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF867NYN bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF491BNX, ENCFF643CGH, ENCFF815AHV 5261326314 ENCODE Processing Pipeline 0110d76a19ff972837aa0f86103dbe84 https://www.encodeproject.org/files/ENCFF867NYN/@@download/ENCFF867NYN.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF491BNX fastq reads ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 1 ENCFF815AHV 3081199530 Michael Snyder, Stanford cebd41070a7a782626e105511473cba8 https://www.encodeproject.org/files/ENCFF491BNX/@@download/ENCFF491BNX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF815AHV fastq reads ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 1 101 paired-ended 2 ENCFF491BNX 3071063467 Michael Snyder, Stanford 7d13c37ea558ae0c5338602908fe4762 https://www.encodeproject.org/files/ENCFF815AHV/@@download/ENCFF815AHV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF449TVZ bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF491BNX, ENCFF807MUK, ENCFF815AHV 5262302090 ENCODE Processing Pipeline d66b0b8d6275a0a79018cb8485bb3935 https://www.encodeproject.org/files/ENCFF449TVZ/@@download/ENCFF449TVZ.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF814DWI bam unfiltered alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF491BNX, ENCFF807MUK, ENCFF815AHV 6003819094 ENCODE Processing Pipeline 01b87b2abfdda611b3493ea04d584273 https://www.encodeproject.org/files/ENCFF814DWI/@@download/ENCFF814DWI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF040BCQ bigWig signal p-value ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF449TVZ 1254660271 ENCODE Processing Pipeline 7f621059b3b0d6d32d327aa45192d252 https://www.encodeproject.org/files/ENCFF040BCQ/@@download/ENCFF040BCQ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF121ECW bigWig signal p-value ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF867NYN 1561816013 ENCODE Processing Pipeline add51624c5c74660841c69a2240159fb https://www.encodeproject.org/files/ENCFF121ECW/@@download/ENCFF121ECW.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF017PFB bigWig signal p-value ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF691KNW, ENCFF867NYN 1955446136 ENCODE Processing Pipeline 6519d3a74872bf31d74a0e3893886b79 https://www.encodeproject.org/files/ENCFF017PFB/@@download/ENCFF017PFB.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF359DWY bigWig signal p-value ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF449TVZ, ENCFF994WEA 1954554503 ENCODE Processing Pipeline 781ee523174c5c3b8e49b65828da4292 https://www.encodeproject.org/files/ENCFF359DWY/@@download/ENCFF359DWY.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF278HXX bigWig fold change over control ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF867NYN 1534566944 ENCODE Processing Pipeline 8b432759bbf06d10d8fe679a79775597 https://www.encodeproject.org/files/ENCFF278HXX/@@download/ENCFF278HXX.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF459YEU bigWig fold change over control ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF449TVZ 1550908325 ENCODE Processing Pipeline 266c68e1a5676d9c320e6b284fa49fa9 https://www.encodeproject.org/files/ENCFF459YEU/@@download/ENCFF459YEU.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF722KNP bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF449TVZ 6600641 ENCODE Processing Pipeline 76499fa82b95097ddb0c937eb92d1d83 https://www.encodeproject.org/files/ENCFF722KNP/@@download/ENCFF722KNP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF994UYB bigWig fold change over control ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF449TVZ, ENCFF994WEA 1970864800 ENCODE Processing Pipeline ced5a0649924680af20cd9e15d076cb3 https://www.encodeproject.org/files/ENCFF994UYB/@@download/ENCFF994UYB.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF419JCY bigWig fold change over control ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF691KNW, ENCFF867NYN 1972967350 ENCODE Processing Pipeline 994d35ba136e1bf916d09dc0215d64b8 https://www.encodeproject.org/files/ENCFF419JCY/@@download/ENCFF419JCY.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF144NJP bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF449TVZ, ENCFF994WEA 7178918 ENCODE Processing Pipeline 1f5f16e7c6723cd7352d3ae31cf66b45 https://www.encodeproject.org/files/ENCFF144NJP/@@download/ENCFF144NJP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF936BDS bigBed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF722KNP 11144520 ENCODE Processing Pipeline c173b4778b58a9aeb454ca963eebda7f https://www.encodeproject.org/files/ENCFF936BDS/@@download/ENCFF936BDS.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF593PYG bigBed narrowPeak conservative idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF484ULT 90000 ENCODE Processing Pipeline 72e85fe45c78190606dcba8f7980a5a5 https://www.encodeproject.org/files/ENCFF593PYG/@@download/ENCFF593PYG.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF041VJQ bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF691KNW, ENCFF867NYN 7182371 ENCODE Processing Pipeline df3bb6de77fffead0ab98c0b4291c8fe https://www.encodeproject.org/files/ENCFF041VJQ/@@download/ENCFF041VJQ.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF497AHX bigBed narrowPeak optimal idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF496DFA 194170 ENCODE Processing Pipeline 92793a0e41dad93a9529c65410ad429d https://www.encodeproject.org/files/ENCFF497AHX/@@download/ENCFF497AHX.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF089VIP bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF867NYN 6596534 ENCODE Processing Pipeline 7085484270e75b137a5b591522adad5e https://www.encodeproject.org/files/ENCFF089VIP/@@download/ENCFF089VIP.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF484ULT bed narrowPeak conservative idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF144NJP, ENCFF573ODA, ENCFF722KNP 28378 ENCODE Processing Pipeline 9c68c71e0af4e12a7f6988081d97ac52 https://www.encodeproject.org/files/ENCFF484ULT/@@download/ENCFF484ULT.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF871ULY bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF691KNW 6178923 ENCODE Processing Pipeline bd61cb47b25f7dcc5cd35e5524ec496e https://www.encodeproject.org/files/ENCFF871ULY/@@download/ENCFF871ULY.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF802MFG bigBed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF144NJP 11241029 ENCODE Processing Pipeline bc943baa5dd0fc4a188f7cdecb101346 https://www.encodeproject.org/files/ENCFF802MFG/@@download/ENCFF802MFG.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF496DFA bed narrowPeak optimal idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF001TDO, ENCFF144NJP, ENCFF573ODA, ENCFF722KNP 86340 ENCODE Processing Pipeline 0eab6ab7bd9f44ff39eb6e40a09a0373 https://www.encodeproject.org/files/ENCFF496DFA/@@download/ENCFF496DFA.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF504OLT bigBed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF089VIP 11149082 ENCODE Processing Pipeline c3939a8f514224bdd058dae6aceb9f87 https://www.encodeproject.org/files/ENCFF504OLT/@@download/ENCFF504OLT.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF806WJB bed narrowPeak optimal idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF041VJQ, ENCFF089VIP, ENCFF419RSJ, ENCFF871ULY 86631 ENCODE Processing Pipeline 19dbf1c68d9229ab08015f040ed62dca https://www.encodeproject.org/files/ENCFF806WJB/@@download/ENCFF806WJB.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF962XIF bed narrowPeak conservative idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF041VJQ, ENCFF089VIP, ENCFF419RSJ, ENCFF871ULY 28866 ENCODE Processing Pipeline 5d2b081b3282f34437d6b08b15603ac0 https://www.encodeproject.org/files/ENCFF962XIF/@@download/ENCFF962XIF.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF942SCT bigBed narrowPeak conservative idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF962XIF 91168 ENCODE Processing Pipeline 73bed77947d02e00db10becd36aa04ad https://www.encodeproject.org/files/ENCFF942SCT/@@download/ENCFF942SCT.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF017KIV bigBed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF041VJQ 11277125 ENCODE Processing Pipeline d549ab11b56aa4a9e7136d5344dc45e5 https://www.encodeproject.org/files/ENCFF017KIV/@@download/ENCFF017KIV.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF369DAY bigBed narrowPeak optimal idr thresholded peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1, 2 ENCFF806WJB 195216 ENCODE Processing Pipeline 705693e3dec40e59c30293e68f1d0ba8 https://www.encodeproject.org/files/ENCFF369DAY/@@download/ENCFF369DAY.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF548XKA fastq reads ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF420BRV 2123058627 Michael Snyder, Stanford 9fc59765da0a88a9cd93516a0a7d16c8 SRA:SRR5111647 https://www.encodeproject.org/files/ENCFF548XKA/@@download/ENCFF548XKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF307HHE fastq reads ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF946JCU 1874366834 Michael Snyder, Stanford f2d7f91597d8a35d8574032e2ede4cda SRA:SRR5111648 https://www.encodeproject.org/files/ENCFF307HHE/@@download/ENCFF307HHE.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF420BRV fastq reads ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF548XKA 2190981931 Michael Snyder, Stanford 4be921ad51682e1440d2d4f4622ad1fb SRA:SRR5111647 https://www.encodeproject.org/files/ENCFF420BRV/@@download/ENCFF420BRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF946JCU fastq reads ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF307HHE 1862470237 Michael Snyder, Stanford 5961d54e7ed7362de241e1b6ee50efd7 SRA:SRR5111648 https://www.encodeproject.org/files/ENCFF946JCU/@@download/ENCFF946JCU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF213SQH bam unfiltered alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF307HHE, ENCFF807MUK, ENCFF946JCU 4106997072 ENCODE Processing Pipeline e2d3e91ec1bb8b37991f3d32e80dd712 https://www.encodeproject.org/files/ENCFF213SQH/@@download/ENCFF213SQH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF613LJZ bam unfiltered alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF420BRV, ENCFF548XKA, ENCFF807MUK 4623969069 ENCODE Processing Pipeline 2ce5f4684a2391017db553f142e87d44 https://www.encodeproject.org/files/ENCFF613LJZ/@@download/ENCFF613LJZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF481TIW bam unfiltered alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF307HHE, ENCFF643CGH, ENCFF946JCU 4111111799 ENCODE Processing Pipeline 768d1a2d3662af9b4121ca4ec369159d https://www.encodeproject.org/files/ENCFF481TIW/@@download/ENCFF481TIW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF884QPU bam unfiltered alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF420BRV, ENCFF548XKA, ENCFF643CGH 4627877170 ENCODE Processing Pipeline e22ea2c413be00c2a23bbaccaa191c8d https://www.encodeproject.org/files/ENCFF884QPU/@@download/ENCFF884QPU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF604MCO bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF307HHE, ENCFF807MUK, ENCFF946JCU 3614728616 ENCODE Processing Pipeline 08d376f750ec8fd4b5c13e84eca3f56e https://www.encodeproject.org/files/ENCFF604MCO/@@download/ENCFF604MCO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF105YMD bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF420BRV, ENCFF548XKA, ENCFF807MUK 4082519061 ENCODE Processing Pipeline d14d2d9bdc671ea55662fd4a8a7250a1 https://www.encodeproject.org/files/ENCFF105YMD/@@download/ENCFF105YMD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF127DUL bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF420BRV, ENCFF548XKA, ENCFF643CGH 4084005060 ENCODE Processing Pipeline 91716453291d0d38fe33f7040d054838 https://www.encodeproject.org/files/ENCFF127DUL/@@download/ENCFF127DUL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF759RDL bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF307HHE, ENCFF643CGH, ENCFF946JCU 3618041259 ENCODE Processing Pipeline d1eff2eed57e78d07426ff12741ef7ba https://www.encodeproject.org/files/ENCFF759RDL/@@download/ENCFF759RDL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF128YUN bigWig signal p-value ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF105YMD 1180457652 ENCODE Processing Pipeline e6c8bdb198ff3e6f27db88d54c3d878b https://www.encodeproject.org/files/ENCFF128YUN/@@download/ENCFF128YUN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF862GEI bigWig signal p-value ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF604MCO 1097379241 ENCODE Processing Pipeline 92190579910a4654b853d2035f5c65b9 https://www.encodeproject.org/files/ENCFF862GEI/@@download/ENCFF862GEI.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF331NAM bigWig signal p-value ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF105YMD, ENCFF604MCO 1742821885 ENCODE Processing Pipeline cf8f292968cd3674bb4da2f938f99d79 https://www.encodeproject.org/files/ENCFF331NAM/@@download/ENCFF331NAM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF492DVF bigWig fold change over control ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF105YMD 1232976087 ENCODE Processing Pipeline 48dfe144bad100271f0a3c5ad432b2a2 https://www.encodeproject.org/files/ENCFF492DVF/@@download/ENCFF492DVF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF178MEZ bigWig fold change over control ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF604MCO 1224644689 ENCODE Processing Pipeline 623960c15cf7cf8e4ed2ac493b9a63a6 https://www.encodeproject.org/files/ENCFF178MEZ/@@download/ENCFF178MEZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF609PTQ bigWig fold change over control ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF105YMD, ENCFF604MCO 1787978005 ENCODE Processing Pipeline 4f0b9f2ef4458d1975dc30a216fefb21 https://www.encodeproject.org/files/ENCFF609PTQ/@@download/ENCFF609PTQ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF018ZAD bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF105YMD 6926023 ENCODE Processing Pipeline d5f969895a97b73c158e72cd162fb123 https://www.encodeproject.org/files/ENCFF018ZAD/@@download/ENCFF018ZAD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF492QYQ bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF604MCO 6858936 ENCODE Processing Pipeline 67a67e3cf2fb24398218ef6a74afe443 https://www.encodeproject.org/files/ENCFF492QYQ/@@download/ENCFF492QYQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF206GKW bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF105YMD, ENCFF604MCO 7134784 ENCODE Processing Pipeline 97e54da534a9b6225544fda492412b98 https://www.encodeproject.org/files/ENCFF206GKW/@@download/ENCFF206GKW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF129JFY bigBed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF018ZAD 13280401 ENCODE Processing Pipeline d5eb3e38ecb1c8b4381f97de75cb94ca https://www.encodeproject.org/files/ENCFF129JFY/@@download/ENCFF129JFY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF779QYT bigBed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF492QYQ 13401098 ENCODE Processing Pipeline 215b1815faa0eea4f64b166cd2d2654e https://www.encodeproject.org/files/ENCFF779QYT/@@download/ENCFF779QYT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF398FYD bigBed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF206GKW 13326900 ENCODE Processing Pipeline 422c050472283be4a2f2c104fd38510e https://www.encodeproject.org/files/ENCFF398FYD/@@download/ENCFF398FYD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF016RPR bed narrowPeak conservative idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF018ZAD, ENCFF206GKW, ENCFF492QYQ 1016362 ENCODE Processing Pipeline b94b4bf7b63ee63560bad74c86b49309 https://www.encodeproject.org/files/ENCFF016RPR/@@download/ENCFF016RPR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF297TNS bigBed narrowPeak conservative idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF016RPR 1825634 ENCODE Processing Pipeline b37ca37d995b54d960502053e4cb5d8e https://www.encodeproject.org/files/ENCFF297TNS/@@download/ENCFF297TNS.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF611XTK bed narrowPeak optimal idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF018ZAD, ENCFF206GKW, ENCFF492QYQ 1121710 ENCODE Processing Pipeline 3f0adab62e7bb4a09b668cfb4f0e5a17 https://www.encodeproject.org/files/ENCFF611XTK/@@download/ENCFF611XTK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF911AFM bigBed narrowPeak optimal idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF611XTK 1978186 ENCODE Processing Pipeline dbac78f2e4f6f7ccddfd28f88a9434e1 https://www.encodeproject.org/files/ENCFF911AFM/@@download/ENCFF911AFM.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF264IZL bigWig signal p-value ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF127DUL, ENCFF759RDL 1550684156 ENCODE Processing Pipeline 91ad29746938e957d713aa7f87006f30 https://www.encodeproject.org/files/ENCFF264IZL/@@download/ENCFF264IZL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF439CFZ bigWig signal p-value ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF759RDL 1202367512 ENCODE Processing Pipeline 7fd2ddd203991c498d33127a0b4c5d18 https://www.encodeproject.org/files/ENCFF439CFZ/@@download/ENCFF439CFZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF285KXV bigWig signal p-value ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF127DUL 1169904838 ENCODE Processing Pipeline d8f958ee362c023f46c6a8fe9b6ce0ca https://www.encodeproject.org/files/ENCFF285KXV/@@download/ENCFF285KXV.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF575WYD bigWig fold change over control ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF127DUL 1227127486 ENCODE Processing Pipeline 3d4ad981656c1bf1f81e5b3479535652 https://www.encodeproject.org/files/ENCFF575WYD/@@download/ENCFF575WYD.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF602ARU bigWig fold change over control ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF759RDL 1214749835 ENCODE Processing Pipeline e32e8c8acab0c8972c207262ca6f4477 https://www.encodeproject.org/files/ENCFF602ARU/@@download/ENCFF602ARU.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF667SCC bigWig fold change over control ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF127DUL, ENCFF759RDL 1803108202 ENCODE Processing Pipeline 172b8c355a6e9ebc86557b5eef6c1961 https://www.encodeproject.org/files/ENCFF667SCC/@@download/ENCFF667SCC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF286IJM bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF127DUL 6889644 ENCODE Processing Pipeline 279d8024e8b8beac7854d1320731aebe https://www.encodeproject.org/files/ENCFF286IJM/@@download/ENCFF286IJM.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF477IDY bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF759RDL 6800921 ENCODE Processing Pipeline 3c3addc71c1e2bf43640300ce09913e5 https://www.encodeproject.org/files/ENCFF477IDY/@@download/ENCFF477IDY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF442AVI bigBed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF286IJM 13306200 ENCODE Processing Pipeline c26738f20dbe9612e0c05eda641c9e15 https://www.encodeproject.org/files/ENCFF442AVI/@@download/ENCFF442AVI.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF549QMH bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF127DUL, ENCFF759RDL 7202910 ENCODE Processing Pipeline 1ac85bf8f50f9f0dacba6e929868f3ae https://www.encodeproject.org/files/ENCFF549QMH/@@download/ENCFF549QMH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF206FVL bigBed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF477IDY 13409959 ENCODE Processing Pipeline d6340539fada5b2b56a1bfff809ac8b9 https://www.encodeproject.org/files/ENCFF206FVL/@@download/ENCFF206FVL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF861MFY bed narrowPeak conservative idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286IJM, ENCFF419RSJ, ENCFF477IDY, ENCFF549QMH 1036450 ENCODE Processing Pipeline f0f641974ee52a74c4000420917c85d9 https://www.encodeproject.org/files/ENCFF861MFY/@@download/ENCFF861MFY.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF868BCR bigBed narrowPeak conservative idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF861MFY 2341151 ENCODE Processing Pipeline ccd012995322b70de56e4de058125a8b https://www.encodeproject.org/files/ENCFF868BCR/@@download/ENCFF868BCR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF452YBB bed narrowPeak optimal idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF286IJM, ENCFF419RSJ, ENCFF477IDY, ENCFF549QMH 1152542 ENCODE Processing Pipeline a206beaec297e62ec51c202f50ec3f4f https://www.encodeproject.org/files/ENCFF452YBB/@@download/ENCFF452YBB.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF359GZC bigBed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF549QMH 13440657 ENCODE Processing Pipeline 237a207fe7ee62654d87e6eb9c85f578 https://www.encodeproject.org/files/ENCFF359GZC/@@download/ENCFF359GZC.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF891QNF bigBed narrowPeak optimal idr thresholded peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF452YBB 2548776 ENCODE Processing Pipeline e626fb71d8c46d1f1b34d6007fe6a547 https://www.encodeproject.org/files/ENCFF891QNF/@@download/ENCFF891QNF.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF756RLE bam unfiltered alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMA, ENCFF002EMB, ENCFF807MUK 8157567706 ENCODE Processing Pipeline 5e9028f6aa3fa52753e809318dbb1d59 https://www.encodeproject.org/files/ENCFF756RLE/@@download/ENCFF756RLE.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF979SXB bam unfiltered alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELY, ENCFF002ELZ, ENCFF807MUK 6207880289 ENCODE Processing Pipeline de6481000d62f56c8aba60c18e8d141d https://www.encodeproject.org/files/ENCFF979SXB/@@download/ENCFF979SXB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF002ELY fastq reads ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002ELZ 2856195879 Michael Snyder, Stanford 61be3c63764830c661015646daa21ea0 https://www.encodeproject.org/files/ENCFF002ELY/@@download/ENCFF002ELY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIK/ released experiment not submitted to GEO partially characterized antibody ENCFF002ELZ fastq reads ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002ELY 2872410089 Michael Snyder, Stanford cdd0ace61ebffb85c24cc65187fa1087 https://www.encodeproject.org/files/ENCFF002ELZ/@@download/ENCFF002ELZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIM/ released experiment not submitted to GEO partially characterized antibody ENCFF002EMA fastq reads ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 1 ENCFF002EMB 3809064397 Michael Snyder, Stanford 1a6b78a7430c9c7dc2e06e0391b44daf https://www.encodeproject.org/files/ENCFF002EMA/@@download/ENCFF002EMA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIL/ released experiment not submitted to GEO partially characterized antibody ENCFF002EMB fastq reads ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 1 100 paired-ended 2 ENCFF002EMA 3825825151 Michael Snyder, Stanford 22fa5aa8010d5dd28172a0c1cff9e8ef https://www.encodeproject.org/files/ENCFF002EMB/@@download/ENCFF002EMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EIP/ released experiment not submitted to GEO partially characterized antibody ENCFF247XNT bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMA, ENCFF002EMB, ENCFF807MUK 7240266264 ENCODE Processing Pipeline 9526461c06454f3d21c3d9c44645c942 https://www.encodeproject.org/files/ENCFF247XNT/@@download/ENCFF247XNT.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF803KOJ bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELY, ENCFF002ELZ, ENCFF807MUK 5414633028 ENCODE Processing Pipeline bb9b6cbadeee98a0b9d226aa2377ec60 https://www.encodeproject.org/files/ENCFF803KOJ/@@download/ENCFF803KOJ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF384SRN bam unfiltered alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELY, ENCFF002ELZ, ENCFF643CGH 6220022572 ENCODE Processing Pipeline aee236c8022a1a9cfd24fa43c4b0c988 https://www.encodeproject.org/files/ENCFF384SRN/@@download/ENCFF384SRN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF516AEF bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELY, ENCFF002ELZ, ENCFF643CGH 5421081030 ENCODE Processing Pipeline 2b1074d573ea71dbacfae99d6bde8517 https://www.encodeproject.org/files/ENCFF516AEF/@@download/ENCFF516AEF.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF697CCI bam unfiltered alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMA, ENCFF002EMB, ENCFF643CGH 8174150209 ENCODE Processing Pipeline b0e01f31b038af1c49fb0ff9fb8d1980 https://www.encodeproject.org/files/ENCFF697CCI/@@download/ENCFF697CCI.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF420RDM bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMA, ENCFF002EMB, ENCFF643CGH 7250367106 ENCODE Processing Pipeline bed6881d176e2f00c91d8b40d33505d7 https://www.encodeproject.org/files/ENCFF420RDM/@@download/ENCFF420RDM.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF455WUT bigWig signal p-value ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF516AEF 1384464797 ENCODE Processing Pipeline 53f266bdeffb47937fe5a4a1d93e4d0c https://www.encodeproject.org/files/ENCFF455WUT/@@download/ENCFF455WUT.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF236OMJ bigWig signal p-value ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF420RDM 1170712063 ENCODE Processing Pipeline f1c53d5ad70aa4b9bef9f56188d231cf https://www.encodeproject.org/files/ENCFF236OMJ/@@download/ENCFF236OMJ.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF414CSM bigWig signal p-value ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF419UIG, ENCFF420RDM, ENCFF516AEF 2118194437 ENCODE Processing Pipeline 9a6a5a667b818da16812a20afac9e99a https://www.encodeproject.org/files/ENCFF414CSM/@@download/ENCFF414CSM.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF276PUM bigWig fold change over control ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF516AEF 1558208576 ENCODE Processing Pipeline 5d6940ad094acb86c692a39d6eeb1408 https://www.encodeproject.org/files/ENCFF276PUM/@@download/ENCFF276PUM.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF520TWL bigWig fold change over control ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF420RDM 1468456321 ENCODE Processing Pipeline c080a2319bc0f5a8b0450191258a62bd https://www.encodeproject.org/files/ENCFF520TWL/@@download/ENCFF520TWL.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF658EZL bigWig fold change over control ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF419UIG, ENCFF420RDM, ENCFF516AEF 2349439989 ENCODE Processing Pipeline 976012e2554f1f5bc6b64612639bd3ac https://www.encodeproject.org/files/ENCFF658EZL/@@download/ENCFF658EZL.bigWig GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF249MVF bigBed narrowPeak optimal idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF813WJW 1885996 ENCODE Processing Pipeline f9be02e2ea28003dd18f547d684457bf https://www.encodeproject.org/files/ENCFF249MVF/@@download/ENCFF249MVF.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF966JUD bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF189KJV, ENCFF419UIG, ENCFF516AEF 6869892 ENCODE Processing Pipeline bcc037e17ce526e943551f34bd0345ac https://www.encodeproject.org/files/ENCFF966JUD/@@download/ENCFF966JUD.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF631VUG bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF419UIG, ENCFF420RDM 6926507 ENCODE Processing Pipeline b353a1758fd6716026bc9eaaca2a7c5b https://www.encodeproject.org/files/ENCFF631VUG/@@download/ENCFF631VUG.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF353WKX bigBed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF631VUG 11692297 ENCODE Processing Pipeline b4ac718ac5d8e5a63e8a45bbf7a43aa8 https://www.encodeproject.org/files/ENCFF353WKX/@@download/ENCFF353WKX.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF355CDU bigBed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF986FPB 11780867 ENCODE Processing Pipeline cd9e2e04790f2206402967559b56378d https://www.encodeproject.org/files/ENCFF355CDU/@@download/ENCFF355CDU.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF986FPB bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF189KJV, ENCFF419UIG, ENCFF420RDM, ENCFF516AEF 7186011 ENCODE Processing Pipeline 8b1699df5229331cc5e8b939ec257ba0 https://www.encodeproject.org/files/ENCFF986FPB/@@download/ENCFF986FPB.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF186IGF bigBed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF966JUD 11619052 ENCODE Processing Pipeline f77637331bf36ffbc4065d10b6c16af1 https://www.encodeproject.org/files/ENCFF186IGF/@@download/ENCFF186IGF.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF813WJW bed narrowPeak optimal idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF631VUG, ENCFF966JUD, ENCFF986FPB 1194071 ENCODE Processing Pipeline 3bb5bec9f3ea3472589b429a9cbc6f5b https://www.encodeproject.org/files/ENCFF813WJW/@@download/ENCFF813WJW.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF470INQ bed narrowPeak conservative idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF419RSJ, ENCFF631VUG, ENCFF966JUD, ENCFF986FPB 963471 ENCODE Processing Pipeline 6fa20ea102f76a4587d1ff3b9278ba8c https://www.encodeproject.org/files/ENCFF470INQ/@@download/ENCFF470INQ.bed.gz GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF750CJG bigBed narrowPeak conservative idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF470INQ 1593919 ENCODE Processing Pipeline 64a1b12b9c4f2cd54067664a39aa6272 https://www.encodeproject.org/files/ENCFF750CJG/@@download/ENCFF750CJG.bigBed GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF079NZM bigWig signal p-value ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 1526963289 ENCODE Processing Pipeline ceeb7f6efd60d2f03287797486da0798 https://www.encodeproject.org/files/ENCFF079NZM/@@download/ENCFF079NZM.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF571NAI bigWig fold change over control ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 1546473467 ENCODE Processing Pipeline 8b6a35586468f91509f3fa3d2e5966a3 https://www.encodeproject.org/files/ENCFF571NAI/@@download/ENCFF571NAI.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF180UMG bigWig signal p-value ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF247XNT, ENCFF806YIH 1169550516 ENCODE Processing Pipeline 6e1f6902a97a4d92e6f26cdf1e7b6514 https://www.encodeproject.org/files/ENCFF180UMG/@@download/ENCFF180UMG.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF973PJK bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 6900096 ENCODE Processing Pipeline 5985a37d51c949670a0adea792b890bf https://www.encodeproject.org/files/ENCFF973PJK/@@download/ENCFF973PJK.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF171KTF bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF247XNT, ENCFF806YIH 6840995 ENCODE Processing Pipeline ae1d9adc601d04d440503872cd1f5ae4 https://www.encodeproject.org/files/ENCFF171KTF/@@download/ENCFF171KTF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF587ZDU bigWig signal p-value ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF247XNT, ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 2112522057 ENCODE Processing Pipeline 0a927acadeab3aefbeaca255cf6b9cc7 https://www.encodeproject.org/files/ENCFF587ZDU/@@download/ENCFF587ZDU.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF433MKF bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF247XNT, ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 7279443 ENCODE Processing Pipeline 6b655e4b7fb9cd5abef002bc055b9968 https://www.encodeproject.org/files/ENCFF433MKF/@@download/ENCFF433MKF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF425RWH bigBed narrowPeak conservative idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF331AZY 1631199 ENCODE Processing Pipeline ce36d6176fb96d3a20e4f597663de581 https://www.encodeproject.org/files/ENCFF425RWH/@@download/ENCFF425RWH.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF367JBJ bigWig fold change over control ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF247XNT, ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 2346676023 ENCODE Processing Pipeline 0f300c82d8b28627a31ea153b1a554d4 https://www.encodeproject.org/files/ENCFF367JBJ/@@download/ENCFF367JBJ.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF182TDM bigBed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF433MKF 11881104 ENCODE Processing Pipeline 85eac5f03a1c3c8109f68fea5e3f3f17 https://www.encodeproject.org/files/ENCFF182TDM/@@download/ENCFF182TDM.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF530ZTE bed narrowPeak optimal idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF171KTF, ENCFF433MKF, ENCFF973PJK 1217890 ENCODE Processing Pipeline 2cb07e62a7925de227e413eedd005c61 https://www.encodeproject.org/files/ENCFF530ZTE/@@download/ENCFF530ZTE.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF036CKK bigBed narrowPeak optimal idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF530ZTE 2432587 ENCODE Processing Pipeline b143a11caf2cd3eea2ea302526f901ae https://www.encodeproject.org/files/ENCFF036CKK/@@download/ENCFF036CKK.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF946HIA bigWig fold change over control ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF247XNT, ENCFF806YIH 1467728057 ENCODE Processing Pipeline 3834ad7735414a51c06f2f5f1816e049 https://www.encodeproject.org/files/ENCFF946HIA/@@download/ENCFF946HIA.bigWig hg19 released experiment not submitted to GEO partially characterized antibody ENCFF914BHD bigBed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 ENCFF171KTF 11579530 ENCODE Processing Pipeline 499da9e46a85f69eb9372e47213738e1 https://www.encodeproject.org/files/ENCFF914BHD/@@download/ENCFF914BHD.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF141EHU bigBed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF973PJK 11650235 ENCODE Processing Pipeline 27ad3d045ea81cd5f7d0e7f3c47300cf https://www.encodeproject.org/files/ENCFF141EHU/@@download/ENCFF141EHU.bigBed hg19 released experiment not submitted to GEO partially characterized antibody ENCFF331AZY bed narrowPeak conservative idr thresholded peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2, 3 ENCFF001TDO, ENCFF171KTF, ENCFF433MKF, ENCFF973PJK 992604 ENCODE Processing Pipeline dfcf7392381720bd7f47caa3cb34c6e4 https://www.encodeproject.org/files/ENCFF331AZY/@@download/ENCFF331AZY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF768RZW fastq reads ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF779JEY 2069425765 Michael Snyder, Stanford 0fca7e0123c7c954561a251be1c9ed39 SRA:SRR5112209 https://www.encodeproject.org/files/ENCFF768RZW/@@download/ENCFF768RZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF952XTB fastq reads ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF354KYI 2412602635 Michael Snyder, Stanford be3a4f82144e687c22d5959075ce4884 SRA:SRR5112208 https://www.encodeproject.org/files/ENCFF952XTB/@@download/ENCFF952XTB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released low read depth, missing genetic modification characterization missing control alignments ENCFF779JEY fastq reads ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF768RZW 2158747562 Michael Snyder, Stanford afd8d647b1248ccd9310e36ce876f3a9 SRA:SRR5112209 https://www.encodeproject.org/files/ENCFF779JEY/@@download/ENCFF779JEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF354KYI fastq reads ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF952XTB 2495338925 Michael Snyder, Stanford 6d5ae2b13a0c32456b7b4bb3a22a2758 SRA:SRR5112208 https://www.encodeproject.org/files/ENCFF354KYI/@@download/ENCFF354KYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released low read depth, missing genetic modification characterization missing control alignments ENCFF918YFV bam unfiltered alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF354KYI, ENCFF643CGH, ENCFF952XTB 5359794963 ENCODE Processing Pipeline 86dcfe300ab7043297ca98026ece8807 https://www.encodeproject.org/files/ENCFF918YFV/@@download/ENCFF918YFV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF339GPN bam unfiltered alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF768RZW, ENCFF779JEY 4600616364 ENCODE Processing Pipeline 10070e6da808b77f2e4a30f6f0e29384 https://www.encodeproject.org/files/ENCFF339GPN/@@download/ENCFF339GPN.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF109PKP bam unfiltered alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF768RZW, ENCFF779JEY, ENCFF807MUK 4598598892 ENCODE Processing Pipeline 5fe5699cf931fc48a98757dc2b32e3e4 https://www.encodeproject.org/files/ENCFF109PKP/@@download/ENCFF109PKP.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF031AAB bam unfiltered alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF354KYI, ENCFF807MUK, ENCFF952XTB 5355041693 ENCODE Processing Pipeline 5c335184fecd24b061f0d64fd52791e3 https://www.encodeproject.org/files/ENCFF031AAB/@@download/ENCFF031AAB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF023LTK bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF768RZW, ENCFF779JEY 3503752979 ENCODE Processing Pipeline 954069b1efd8d057366236ab60dc950b https://www.encodeproject.org/files/ENCFF023LTK/@@download/ENCFF023LTK.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF583PRY bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF768RZW, ENCFF779JEY, ENCFF807MUK 3501485997 ENCODE Processing Pipeline 52d57a31242beaf30928548e45c58606 https://www.encodeproject.org/files/ENCFF583PRY/@@download/ENCFF583PRY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF649JMD bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF354KYI, ENCFF643CGH, ENCFF952XTB 4524321768 ENCODE Processing Pipeline e833f2e5a52e1648ca28c16a3a2c2d0f https://www.encodeproject.org/files/ENCFF649JMD/@@download/ENCFF649JMD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF492TFL bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF354KYI, ENCFF807MUK, ENCFF952XTB 4520673993 ENCODE Processing Pipeline ad654af43d6eae9c19ef6cfd57432054 https://www.encodeproject.org/files/ENCFF492TFL/@@download/ENCFF492TFL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF059RHE bigWig signal p-value ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF583PRY 1156732000 ENCODE Processing Pipeline 820c04d69a4522b34a86a45bc2f3eb80 https://www.encodeproject.org/files/ENCFF059RHE/@@download/ENCFF059RHE.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF525YHU bigWig signal p-value ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF492TFL 1426388430 ENCODE Processing Pipeline 2f0ae8cccd561398c2b8c87718176df1 https://www.encodeproject.org/files/ENCFF525YHU/@@download/ENCFF525YHU.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF675DCR bigWig signal p-value ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF492TFL, ENCFF583PRY 1397443267 ENCODE Processing Pipeline 543f21fae128d5d9c831dcc96dcd3392 https://www.encodeproject.org/files/ENCFF675DCR/@@download/ENCFF675DCR.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF390FWP bigWig fold change over control ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF583PRY 1177465920 ENCODE Processing Pipeline 2c4c705c28da87a946875b7734767184 https://www.encodeproject.org/files/ENCFF390FWP/@@download/ENCFF390FWP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF195NPY bigWig fold change over control ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF492TFL 1385921450 ENCODE Processing Pipeline 030e5998ee4c556c386202ceec7f7dbc https://www.encodeproject.org/files/ENCFF195NPY/@@download/ENCFF195NPY.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF142GDP bigWig fold change over control ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF492TFL, ENCFF583PRY 1878531677 ENCODE Processing Pipeline 18206c1f7f6cc0b58db73c06db6deb88 https://www.encodeproject.org/files/ENCFF142GDP/@@download/ENCFF142GDP.bigWig hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF469FSE bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF583PRY 6657105 ENCODE Processing Pipeline 75ffa7c0093f0cc483f5d0866c69b568 https://www.encodeproject.org/files/ENCFF469FSE/@@download/ENCFF469FSE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF125NRW bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF492TFL 6990992 ENCODE Processing Pipeline 371e0ca64207e44d71940416a8b89106 https://www.encodeproject.org/files/ENCFF125NRW/@@download/ENCFF125NRW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF541CCM bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF492TFL, ENCFF583PRY 7161705 ENCODE Processing Pipeline d56530b536e2d46c4efbafc94ebe342c https://www.encodeproject.org/files/ENCFF541CCM/@@download/ENCFF541CCM.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF796NRG bigBed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF469FSE 13576447 ENCODE Processing Pipeline 7ed1222842beb72be32820bb508db73b https://www.encodeproject.org/files/ENCFF796NRG/@@download/ENCFF796NRG.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF728FSB bigBed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF125NRW 13465286 ENCODE Processing Pipeline dc1b5c8f52ad25e092066f12737560ae https://www.encodeproject.org/files/ENCFF728FSB/@@download/ENCFF728FSB.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF482NDZ bigBed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF541CCM 13384417 ENCODE Processing Pipeline 27c31114da07e8dbff9ca1f0f32fa2a8 https://www.encodeproject.org/files/ENCFF482NDZ/@@download/ENCFF482NDZ.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF168HHB bed narrowPeak optimal idr thresholded peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF125NRW, ENCFF469FSE, ENCFF541CCM 431630 ENCODE Processing Pipeline fabd7ac2458cd379262c7fb71586ee75 https://www.encodeproject.org/files/ENCFF168HHB/@@download/ENCFF168HHB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF476CRG bigBed narrowPeak optimal idr thresholded peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF168HHB 956057 ENCODE Processing Pipeline 6123fa3036008b076e094c254c4d49cc https://www.encodeproject.org/files/ENCFF476CRG/@@download/ENCFF476CRG.bigBed hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF546VUK bigWig signal p-value ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF023LTK 1278724431 ENCODE Processing Pipeline 7ac19b4ca35f6a040531744a5487674a https://www.encodeproject.org/files/ENCFF546VUK/@@download/ENCFF546VUK.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF184NBA bigWig signal p-value ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF649JMD 1372322896 ENCODE Processing Pipeline 6d72eae5ad42f2846cc2e21ebfe60f15 https://www.encodeproject.org/files/ENCFF184NBA/@@download/ENCFF184NBA.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF303VLC bigWig fold change over control ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF023LTK 1171926901 ENCODE Processing Pipeline 0ad49b78649858f8c2fb04001933077d https://www.encodeproject.org/files/ENCFF303VLC/@@download/ENCFF303VLC.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF219WWM bigWig signal p-value ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF023LTK, ENCFF649JMD 1732424014 ENCODE Processing Pipeline 7c63d19748dfaf46c347890cc0e946c8 https://www.encodeproject.org/files/ENCFF219WWM/@@download/ENCFF219WWM.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF973MXX bigWig fold change over control ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF649JMD 1386837905 ENCODE Processing Pipeline 12e653888beac92083bdd08bc33e7ec6 https://www.encodeproject.org/files/ENCFF973MXX/@@download/ENCFF973MXX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF550CVX bigWig fold change over control ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF023LTK, ENCFF649JMD 1852196948 ENCODE Processing Pipeline c345b107f384c0aef40dac5fa5dbf84d https://www.encodeproject.org/files/ENCFF550CVX/@@download/ENCFF550CVX.bigWig GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF547EGZ bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF023LTK 6521074 ENCODE Processing Pipeline ba397b6a3342891a8ca5dacdecb6a2bb https://www.encodeproject.org/files/ENCFF547EGZ/@@download/ENCFF547EGZ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF821FXF bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF649JMD 6903944 ENCODE Processing Pipeline 0a4ed97ba94fdde5ee7716768dc4de85 https://www.encodeproject.org/files/ENCFF821FXF/@@download/ENCFF821FXF.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF342QVX bigBed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF547EGZ 13568435 ENCODE Processing Pipeline 42a73b27bd3c038b631904de4a271e8c https://www.encodeproject.org/files/ENCFF342QVX/@@download/ENCFF342QVX.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF363GMJ bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF023LTK, ENCFF649JMD 7115476 ENCODE Processing Pipeline aeaf2e12f7d756a0b125f6070e12f0ff https://www.encodeproject.org/files/ENCFF363GMJ/@@download/ENCFF363GMJ.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF947JYV bigBed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF821FXF 13484086 ENCODE Processing Pipeline 6953b0c3e725b9f11eb3597a1fa7be68 https://www.encodeproject.org/files/ENCFF947JYV/@@download/ENCFF947JYV.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF947VMV bigBed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF363GMJ 13377963 ENCODE Processing Pipeline b71518a1cf01e3030d782e76662feb58 https://www.encodeproject.org/files/ENCFF947VMV/@@download/ENCFF947VMV.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF988PII bed narrowPeak optimal idr thresholded peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF363GMJ, ENCFF419RSJ, ENCFF547EGZ, ENCFF821FXF 426938 ENCODE Processing Pipeline e844378ef48ff9cc2c2f374514a2ab54 https://www.encodeproject.org/files/ENCFF988PII/@@download/ENCFF988PII.bed.gz GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF901EKI bigBed narrowPeak optimal idr thresholded peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF988PII 950749 ENCODE Processing Pipeline ee144b0a4dc8ca03a5d501e852b7faa6 https://www.encodeproject.org/files/ENCFF901EKI/@@download/ENCFF901EKI.bigBed GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF528TQX fastq reads ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF110HEA 2880445980 Michael Snyder, Stanford 68d62751155554ea911ce124276d547a SRA:SRR5111753 https://www.encodeproject.org/files/ENCFF528TQX/@@download/ENCFF528TQX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF858BWH fastq reads ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF080EPR 2404932988 Michael Snyder, Stanford be0e6e08dfb7e926c06e6b65843b3ce8 SRA:SRR5111752 https://www.encodeproject.org/files/ENCFF858BWH/@@download/ENCFF858BWH.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF110HEA fastq reads ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF528TQX 2942308637 Michael Snyder, Stanford 38564190912d787507b9e96902551ea6 SRA:SRR5111753 https://www.encodeproject.org/files/ENCFF110HEA/@@download/ENCFF110HEA.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF080EPR fastq reads ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF858BWH 2460504197 Michael Snyder, Stanford 4d54fd942a3cbcf61ed14ce5c3f35648 SRA:SRR5111752 https://www.encodeproject.org/files/ENCFF080EPR/@@download/ENCFF080EPR.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF548TCT bam unfiltered alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF080EPR, ENCFF643CGH, ENCFF858BWH 5392553858 ENCODE Processing Pipeline 8f87dc5d617a96d2cdebc330476ba134 https://www.encodeproject.org/files/ENCFF548TCT/@@download/ENCFF548TCT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF933KKJ bam unfiltered alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF110HEA, ENCFF528TQX, ENCFF807MUK 6347986924 ENCODE Processing Pipeline ac0623aac11462869ec64f83736c92dd https://www.encodeproject.org/files/ENCFF933KKJ/@@download/ENCFF933KKJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF196ZJU bam unfiltered alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF080EPR, ENCFF807MUK, ENCFF858BWH 5387481683 ENCODE Processing Pipeline f8c0cca7d810233bffd5dedd40f6129c https://www.encodeproject.org/files/ENCFF196ZJU/@@download/ENCFF196ZJU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF290BZK bam unfiltered alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF110HEA, ENCFF528TQX, ENCFF643CGH 6354006160 ENCODE Processing Pipeline 9db86d004b1372c050e45c274cf701c9 https://www.encodeproject.org/files/ENCFF290BZK/@@download/ENCFF290BZK.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF454HMH bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF080EPR, ENCFF643CGH, ENCFF858BWH 4517920138 ENCODE Processing Pipeline bda3b50907ccb3bd28705929d12940c0 https://www.encodeproject.org/files/ENCFF454HMH/@@download/ENCFF454HMH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF133FDE bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF080EPR, ENCFF807MUK, ENCFF858BWH 4515784754 ENCODE Processing Pipeline d72f6ab9abe5fc3749eea5c7ff8de757 https://www.encodeproject.org/files/ENCFF133FDE/@@download/ENCFF133FDE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF698JDD bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF110HEA, ENCFF528TQX, ENCFF807MUK 5273117009 ENCODE Processing Pipeline 52d2c14b9baca898d29fdc6b4ff67d4e https://www.encodeproject.org/files/ENCFF698JDD/@@download/ENCFF698JDD.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF990BCT bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF110HEA, ENCFF528TQX, ENCFF643CGH 5275811469 ENCODE Processing Pipeline a09f69e77cb86fbe0fd51bc8aed1e5cf https://www.encodeproject.org/files/ENCFF990BCT/@@download/ENCFF990BCT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF859DFI bigWig signal p-value ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF698JDD 1521095737 ENCODE Processing Pipeline 4e2be9381fac1a07503b1393693b268c https://www.encodeproject.org/files/ENCFF859DFI/@@download/ENCFF859DFI.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF325NWZ bigWig signal p-value ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF133FDE 1189635735 ENCODE Processing Pipeline ded69edf4b8f78f6c0ded230015baa08 https://www.encodeproject.org/files/ENCFF325NWZ/@@download/ENCFF325NWZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF861KFG bigWig signal p-value ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF133FDE, ENCFF698JDD 1978811342 ENCODE Processing Pipeline 9e647391c6722cee4d51e0dbf6df8b19 https://www.encodeproject.org/files/ENCFF861KFG/@@download/ENCFF861KFG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF799IJK bigWig fold change over control ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF698JDD 1522898756 ENCODE Processing Pipeline c5a781678954a2686aea9bfd567e4915 https://www.encodeproject.org/files/ENCFF799IJK/@@download/ENCFF799IJK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF915FVW bigWig fold change over control ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF133FDE 1420095489 ENCODE Processing Pipeline 2d0fd464a34e31bd8425f52af1f90060 https://www.encodeproject.org/files/ENCFF915FVW/@@download/ENCFF915FVW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF428RHZ bigWig fold change over control ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF133FDE, ENCFF698JDD 2015834994 ENCODE Processing Pipeline 505da26486389f9aa6a93d02a04ebe5f https://www.encodeproject.org/files/ENCFF428RHZ/@@download/ENCFF428RHZ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF884FCN bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF698JDD 6586509 ENCODE Processing Pipeline 8d89b24a8c4d10ffe4897c90ecfd8a5e https://www.encodeproject.org/files/ENCFF884FCN/@@download/ENCFF884FCN.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF787YKD bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF133FDE 6503020 ENCODE Processing Pipeline e1082f258e5a0d4b44c9203ef3a07759 https://www.encodeproject.org/files/ENCFF787YKD/@@download/ENCFF787YKD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF354GLO bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF133FDE, ENCFF698JDD 7280983 ENCODE Processing Pipeline 712670deb4266b8cca437d7ce4a17fb5 https://www.encodeproject.org/files/ENCFF354GLO/@@download/ENCFF354GLO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF334PFK bigBed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF884FCN 11154132 ENCODE Processing Pipeline 66625fc6d17dea6bcbc140226dbeaffe https://www.encodeproject.org/files/ENCFF334PFK/@@download/ENCFF334PFK.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF433PKI bigBed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF787YKD 11210728 ENCODE Processing Pipeline 2939ebd713c024c44cdebf75fc037b9c https://www.encodeproject.org/files/ENCFF433PKI/@@download/ENCFF433PKI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF251NUI bigBed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF354GLO 11241873 ENCODE Processing Pipeline 20557af93215e507c5d79783e98a3abd https://www.encodeproject.org/files/ENCFF251NUI/@@download/ENCFF251NUI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF847UBR bed narrowPeak conservative idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF354GLO, ENCFF787YKD, ENCFF884FCN 18800 ENCODE Processing Pipeline b7ee5c874d1f328298f6e32d588ffb5b https://www.encodeproject.org/files/ENCFF847UBR/@@download/ENCFF847UBR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF443BHV bigBed narrowPeak conservative idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF847UBR 83964 ENCODE Processing Pipeline 0a392cbf2775f9e2adae32dea5a23016 https://www.encodeproject.org/files/ENCFF443BHV/@@download/ENCFF443BHV.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF254EAY bed narrowPeak optimal idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF354GLO, ENCFF787YKD, ENCFF884FCN 33268 ENCODE Processing Pipeline 0aea64856208c291e80952f0942f27eb https://www.encodeproject.org/files/ENCFF254EAY/@@download/ENCFF254EAY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF777WOX bigBed narrowPeak optimal idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF254EAY 106909 ENCODE Processing Pipeline d44bc1b637e0b0032c970512159a432e https://www.encodeproject.org/files/ENCFF777WOX/@@download/ENCFF777WOX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF776FRH bigWig signal p-value ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF990BCT 1557612550 ENCODE Processing Pipeline c92f5b22e7a1b9d2315f32d1971377ee https://www.encodeproject.org/files/ENCFF776FRH/@@download/ENCFF776FRH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF732BIY bigWig signal p-value ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF454HMH 1165625883 ENCODE Processing Pipeline 5dc997e1e150842f3fe8c0914ff7bcad https://www.encodeproject.org/files/ENCFF732BIY/@@download/ENCFF732BIY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF914ZHC bigWig signal p-value ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF454HMH, ENCFF990BCT 2003624865 ENCODE Processing Pipeline 757bb8b0e61dfc4e0d336e026ca74f0e https://www.encodeproject.org/files/ENCFF914ZHC/@@download/ENCFF914ZHC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF397MDR bigWig fold change over control ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF990BCT 1536092915 ENCODE Processing Pipeline 6c186d7fa4b9f45f7a57ce7ae59d6e7a https://www.encodeproject.org/files/ENCFF397MDR/@@download/ENCFF397MDR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF228ONY bigWig fold change over control ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF454HMH 1392835626 ENCODE Processing Pipeline 5f1c35540bff0dc3aae0ba3792981646 https://www.encodeproject.org/files/ENCFF228ONY/@@download/ENCFF228ONY.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF572NTZ bigWig fold change over control ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF454HMH, ENCFF990BCT 2032634297 ENCODE Processing Pipeline 2e1d2fce8ee66e82df8729cdef068ccd https://www.encodeproject.org/files/ENCFF572NTZ/@@download/ENCFF572NTZ.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF543UVW bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF990BCT 6447759 ENCODE Processing Pipeline 7d47ef49c7298fc06e88ba013899fe5d https://www.encodeproject.org/files/ENCFF543UVW/@@download/ENCFF543UVW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF316CDM bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF454HMH 6025334 ENCODE Processing Pipeline 31b6a30b8aa089e031ecce9efbd7603c https://www.encodeproject.org/files/ENCFF316CDM/@@download/ENCFF316CDM.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF232MVB bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF454HMH, ENCFF990BCT 7241547 ENCODE Processing Pipeline 51f89969c7cc6db635bc949cd1664824 https://www.encodeproject.org/files/ENCFF232MVB/@@download/ENCFF232MVB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF872YLA bigBed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF543UVW 11144281 ENCODE Processing Pipeline 4c0a44569f13bfdbd968f6ee2325e1a5 https://www.encodeproject.org/files/ENCFF872YLA/@@download/ENCFF872YLA.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF571YWP bigBed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF316CDM 10915616 ENCODE Processing Pipeline fdb2fde157a6074ad0a257da517c2fab https://www.encodeproject.org/files/ENCFF571YWP/@@download/ENCFF571YWP.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF129MGH bed narrowPeak conservative idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF232MVB, ENCFF316CDM, ENCFF419RSJ, ENCFF543UVW 19355 ENCODE Processing Pipeline f42de8c70a4d41597dc2e0f8fb26361b https://www.encodeproject.org/files/ENCFF129MGH/@@download/ENCFF129MGH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF334TBU bed narrowPeak optimal idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF232MVB, ENCFF316CDM, ENCFF419RSJ, ENCFF543UVW 32459 ENCODE Processing Pipeline 24ecb59378cbf3b00b0405267984ca64 https://www.encodeproject.org/files/ENCFF334TBU/@@download/ENCFF334TBU.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF491FLJ bigBed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF232MVB 11258089 ENCODE Processing Pipeline 44e1fb3a75466c71f930b56c74aff5de https://www.encodeproject.org/files/ENCFF491FLJ/@@download/ENCFF491FLJ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF862NUI bigBed narrowPeak conservative idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF129MGH 85978 ENCODE Processing Pipeline 8ddafe106e152f76b4b44e59816d25f1 https://www.encodeproject.org/files/ENCFF862NUI/@@download/ENCFF862NUI.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF296IHF bigBed narrowPeak optimal idr thresholded peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF334TBU 107646 ENCODE Processing Pipeline d0e7acb77c88e88cd060eba28141fac1 https://www.encodeproject.org/files/ENCFF296IHF/@@download/ENCFF296IHF.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF706OYX fastq reads ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 1 ENCFF754UWT 2658335919 Michael Snyder, Stanford 357e08111a0943c6e187b93843e0ea49 SRA:SRR5111403 https://www.encodeproject.org/files/ENCFF706OYX/@@download/ENCFF706OYX.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF292AJW fastq reads ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 1 ENCFF513JDU 2366606018 Michael Snyder, Stanford 742c58eadc620eaee13a77af2bbd136e SRA:SRR5111402 https://www.encodeproject.org/files/ENCFF292AJW/@@download/ENCFF292AJW.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF754UWT fastq reads ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 1 101 paired-ended 2 ENCFF706OYX 2743564137 Michael Snyder, Stanford 27b4e4c7eb4bc1f34e226ecd984ab75b SRA:SRR5111403 https://www.encodeproject.org/files/ENCFF754UWT/@@download/ENCFF754UWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF513JDU fastq reads ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 1 101 paired-ended 2 ENCFF292AJW 2438288493 Michael Snyder, Stanford b41c095c7f18e41c2319d2c65ffce569 SRA:SRR5111402 https://www.encodeproject.org/files/ENCFF513JDU/@@download/ENCFF513JDU.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF344IVC bam unfiltered alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF706OYX, ENCFF754UWT, ENCFF807MUK 5978769788 ENCODE Processing Pipeline ff55cf0b7efae3e60c4f1d2c00a34bb3 https://www.encodeproject.org/files/ENCFF344IVC/@@download/ENCFF344IVC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF531MJW bam unfiltered alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF706OYX, ENCFF754UWT 5985457968 ENCODE Processing Pipeline b0fc67fc644fdfc2c6fdd42da10f18f5 https://www.encodeproject.org/files/ENCFF531MJW/@@download/ENCFF531MJW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF248PTH bam unfiltered alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF292AJW, ENCFF513JDU, ENCFF643CGH 5367517204 ENCODE Processing Pipeline 92e745124910ff2f2e21afbe77cca3f7 https://www.encodeproject.org/files/ENCFF248PTH/@@download/ENCFF248PTH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF048RGD bam unfiltered alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF292AJW, ENCFF513JDU, ENCFF807MUK 5360675689 ENCODE Processing Pipeline 9a9ee8182cfaa72be35bff2869901394 https://www.encodeproject.org/files/ENCFF048RGD/@@download/ENCFF048RGD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF353RVO bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF706OYX, ENCFF754UWT 5028084865 ENCODE Processing Pipeline 1b28733a7cd5f8111283387b5cc39783 https://www.encodeproject.org/files/ENCFF353RVO/@@download/ENCFF353RVO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF342AFE bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF292AJW, ENCFF513JDU, ENCFF643CGH 4582401070 ENCODE Processing Pipeline 89fd057b921d72e314dd1475474a7ec7 https://www.encodeproject.org/files/ENCFF342AFE/@@download/ENCFF342AFE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF499NJO bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF292AJW, ENCFF513JDU, ENCFF807MUK 4580827608 ENCODE Processing Pipeline 5e14459149e15074d8df4e8c1c6b53af https://www.encodeproject.org/files/ENCFF499NJO/@@download/ENCFF499NJO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF985SIU bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF706OYX, ENCFF754UWT, ENCFF807MUK 5026257737 ENCODE Processing Pipeline 1d5302be447ade72dc34d829568d004d https://www.encodeproject.org/files/ENCFF985SIU/@@download/ENCFF985SIU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF549WSJ bigWig signal p-value ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF985SIU 1222242818 ENCODE Processing Pipeline b2bc78bef6a8282ba3f27f9dfd2b7f0c https://www.encodeproject.org/files/ENCFF549WSJ/@@download/ENCFF549WSJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF647PJA bigWig signal p-value ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF499NJO 1444825240 ENCODE Processing Pipeline f36672b3363992c20d38b222a5755160 https://www.encodeproject.org/files/ENCFF647PJA/@@download/ENCFF647PJA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF405GWA bigWig signal p-value ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF499NJO, ENCFF985SIU 2016287613 ENCODE Processing Pipeline b523a5286a10ee75b000fd861c42a20e https://www.encodeproject.org/files/ENCFF405GWA/@@download/ENCFF405GWA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF451FNF bigWig fold change over control ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF985SIU 1507190785 ENCODE Processing Pipeline 8c69da26251fe6bc9fa632ae266747a6 https://www.encodeproject.org/files/ENCFF451FNF/@@download/ENCFF451FNF.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF798JBP bigWig fold change over control ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF499NJO 1426793790 ENCODE Processing Pipeline dd52e0769ac6313af6cd2eb5e79fd84f https://www.encodeproject.org/files/ENCFF798JBP/@@download/ENCFF798JBP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF827YNM bigWig fold change over control ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF499NJO, ENCFF985SIU 2040809704 ENCODE Processing Pipeline 8a3a307ea127b04a4ffefa45ea5c0f25 https://www.encodeproject.org/files/ENCFF827YNM/@@download/ENCFF827YNM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF953KSE bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF985SIU 6721546 ENCODE Processing Pipeline fb32f4f4f97814d6901ed98aa003a0f8 https://www.encodeproject.org/files/ENCFF953KSE/@@download/ENCFF953KSE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF299KLM bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF499NJO 6748654 ENCODE Processing Pipeline 86f36e7d43743d333492e185ae4e7a2a https://www.encodeproject.org/files/ENCFF299KLM/@@download/ENCFF299KLM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF880CYE bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF499NJO, ENCFF985SIU 7259127 ENCODE Processing Pipeline ceadab5f35896dd72a32524c60324d35 https://www.encodeproject.org/files/ENCFF880CYE/@@download/ENCFF880CYE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF626ZIE bigBed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF953KSE 11325819 ENCODE Processing Pipeline 30b3ed9bd0a69a96e939dc0141a85600 https://www.encodeproject.org/files/ENCFF626ZIE/@@download/ENCFF626ZIE.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF521INV bigBed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF299KLM 11364386 ENCODE Processing Pipeline a03a789858dbf15a7b3b6373f9c0deea https://www.encodeproject.org/files/ENCFF521INV/@@download/ENCFF521INV.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF791VVA bigBed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF880CYE 11226003 ENCODE Processing Pipeline 991d6382be7736f57cc8a790161a5577 https://www.encodeproject.org/files/ENCFF791VVA/@@download/ENCFF791VVA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF218FJC bed narrowPeak conservative idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF299KLM, ENCFF880CYE, ENCFF953KSE 172020 ENCODE Processing Pipeline 508e3dd022d5dd88c533a792f8dca6f2 https://www.encodeproject.org/files/ENCFF218FJC/@@download/ENCFF218FJC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF191GZB bigBed narrowPeak conservative idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF218FJC 322605 ENCODE Processing Pipeline d7e1abec41c0abe03cb7f20d865c30ee https://www.encodeproject.org/files/ENCFF191GZB/@@download/ENCFF191GZB.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF426HZX bigBed narrowPeak optimal idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF535VSU 447506 ENCODE Processing Pipeline ad2fef1fc038ff79e2d4b9191bc457c8 https://www.encodeproject.org/files/ENCFF426HZX/@@download/ENCFF426HZX.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF535VSU bed narrowPeak optimal idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF001TDO, ENCFF299KLM, ENCFF880CYE, ENCFF953KSE 202093 ENCODE Processing Pipeline e22ee408edbf431b05a86b1024439156 https://www.encodeproject.org/files/ENCFF535VSU/@@download/ENCFF535VSU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF216BEL bigWig signal p-value ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF353RVO 1548535669 ENCODE Processing Pipeline 6822cd36df9e264108db033c580e725c https://www.encodeproject.org/files/ENCFF216BEL/@@download/ENCFF216BEL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF186VTT bigWig signal p-value ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF342AFE 1200728974 ENCODE Processing Pipeline c8b7f5f977ea168f4badb7d7854fe776 https://www.encodeproject.org/files/ENCFF186VTT/@@download/ENCFF186VTT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF486ZDK bigWig signal p-value ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF342AFE, ENCFF353RVO 2027363086 ENCODE Processing Pipeline 222287db546bd2bfac5c88e657539ce2 https://www.encodeproject.org/files/ENCFF486ZDK/@@download/ENCFF486ZDK.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF627VIB bigWig fold change over control ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF353RVO 1502913278 ENCODE Processing Pipeline 88021e62ab62534c20422ea3bb6d8f8e https://www.encodeproject.org/files/ENCFF627VIB/@@download/ENCFF627VIB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF162UQE bigWig fold change over control ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF342AFE 1430710160 ENCODE Processing Pipeline 66a5fefad13527d89544842c50726089 https://www.encodeproject.org/files/ENCFF162UQE/@@download/ENCFF162UQE.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF681KAZ bigWig fold change over control ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF342AFE, ENCFF353RVO 2052826838 ENCODE Processing Pipeline 427451b1e8c909fafe7a3245b78f76d2 https://www.encodeproject.org/files/ENCFF681KAZ/@@download/ENCFF681KAZ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF932FXE bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF342AFE, ENCFF353RVO 7239218 ENCODE Processing Pipeline 1cca850f51e174cc3c600044171d91f4 https://www.encodeproject.org/files/ENCFF932FXE/@@download/ENCFF932FXE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF687HZJ bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF353RVO 6579799 ENCODE Processing Pipeline 7e4c730e61c3aac1f5670caa1c2f11a5 https://www.encodeproject.org/files/ENCFF687HZJ/@@download/ENCFF687HZJ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF751UDM bigBed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF687HZJ 11335348 ENCODE Processing Pipeline 4166090c0c7ae04e8a1572347ca24d06 https://www.encodeproject.org/files/ENCFF751UDM/@@download/ENCFF751UDM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF554AUN bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF342AFE 6625021 ENCODE Processing Pipeline ee6f9151aaf7196d6a0157ae4c5bc9c2 https://www.encodeproject.org/files/ENCFF554AUN/@@download/ENCFF554AUN.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF974PFD bigBed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF932FXE 11249190 ENCODE Processing Pipeline 2e236eb40e6bc8a22577c0f9c7a3466d https://www.encodeproject.org/files/ENCFF974PFD/@@download/ENCFF974PFD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF503DHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF481IOH 322567 ENCODE Processing Pipeline 74a03dd1d096c348c75a0eff15477a49 https://www.encodeproject.org/files/ENCFF503DHJ/@@download/ENCFF503DHJ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF708BKN bigBed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF554AUN 11377567 ENCODE Processing Pipeline 4c449ed2b6dca870fe6a93eed3b8e333 https://www.encodeproject.org/files/ENCFF708BKN/@@download/ENCFF708BKN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF481IOH bed narrowPeak conservative idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF554AUN, ENCFF687HZJ, ENCFF932FXE 170740 ENCODE Processing Pipeline a165ef6fcc041c8aad9e7735bef2fc0e https://www.encodeproject.org/files/ENCFF481IOH/@@download/ENCFF481IOH.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF359XJQ bed narrowPeak optimal idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF554AUN, ENCFF687HZJ, ENCFF932FXE 198360 ENCODE Processing Pipeline 5f31ee20c2414fff1bf646082b581012 https://www.encodeproject.org/files/ENCFF359XJQ/@@download/ENCFF359XJQ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF543OWB bigBed narrowPeak optimal idr thresholded peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1, 2 ENCFF359XJQ 358002 ENCODE Processing Pipeline 5310c26c768c0ceac77e9a66b0ccac68 https://www.encodeproject.org/files/ENCFF543OWB/@@download/ENCFF543OWB.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF505LMS fastq reads ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 1 ENCFF495EOX 3766230480 Michael Snyder, Stanford 306a6b77a3e2978e65cfc11217e90100 SRA:SRR5111298 https://www.encodeproject.org/files/ENCFF505LMS/@@download/ENCFF505LMS.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF986WDC fastq reads ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 1 ENCFF410UBV 2881900971 Michael Snyder, Stanford 67fbfdc7e7c8b41087ed1f7d26dfc1df SRA:SRR5111297 https://www.encodeproject.org/files/ENCFF986WDC/@@download/ENCFF986WDC.fastq.gz Illumina HiSeq 4000 /files/ENCFF085HHB/, /files/ENCFF154SYW/, /files/ENCFF196VCR/, /files/ENCFF557HNG/, /files/ENCFF736BPA/, /files/ENCFF952FAG/ released missing genetic modification characterization missing control alignments ENCFF410UBV fastq reads ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 1 101 paired-ended 2 ENCFF986WDC 3009529403 Michael Snyder, Stanford efe5dd7853ee899799fdba11e9e4866f SRA:SRR5111297 https://www.encodeproject.org/files/ENCFF410UBV/@@download/ENCFF410UBV.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF495EOX fastq reads ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 1 101 paired-ended 2 ENCFF505LMS 3918643328 Michael Snyder, Stanford 940f04bf8d0d9ae38f656cd1e77b2266 SRA:SRR5111298 https://www.encodeproject.org/files/ENCFF495EOX/@@download/ENCFF495EOX.fastq.gz Illumina HiSeq 4000 /files/ENCFF172JDP/, /files/ENCFF173EDE/, /files/ENCFF453HUS/, /files/ENCFF467VIQ/, /files/ENCFF595HTZ/, /files/ENCFF956RLS/ released missing genetic modification characterization missing control alignments ENCFF688NZK bam unfiltered alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF410UBV, ENCFF643CGH, ENCFF986WDC 5883106916 ENCODE Processing Pipeline 0edfa05bc5dfd0d248220c75a0393542 https://www.encodeproject.org/files/ENCFF688NZK/@@download/ENCFF688NZK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF031CIP bam unfiltered alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF495EOX, ENCFF505LMS, ENCFF643CGH 7466690322 ENCODE Processing Pipeline 199d595679542ec07bae4666f429bce1 https://www.encodeproject.org/files/ENCFF031CIP/@@download/ENCFF031CIP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF008CZM bam unfiltered alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF410UBV, ENCFF807MUK, ENCFF986WDC 5874610852 ENCODE Processing Pipeline 34dc58877b9ea62fd71f9b67f17b7727 https://www.encodeproject.org/files/ENCFF008CZM/@@download/ENCFF008CZM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF670DZJ bam unfiltered alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF495EOX, ENCFF505LMS, ENCFF807MUK 7455424108 ENCODE Processing Pipeline d5e8841e503dbd90d06056e87ef963b9 https://www.encodeproject.org/files/ENCFF670DZJ/@@download/ENCFF670DZJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF076IGY bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF410UBV, ENCFF643CGH, ENCFF986WDC 4884300367 ENCODE Processing Pipeline e2e651858e7183151203735c8a806c71 https://www.encodeproject.org/files/ENCFF076IGY/@@download/ENCFF076IGY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF060YYI bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF410UBV, ENCFF807MUK, ENCFF986WDC 4881520945 ENCODE Processing Pipeline 0acd3653f11cee2399bd9efc20126916 https://www.encodeproject.org/files/ENCFF060YYI/@@download/ENCFF060YYI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF131UWG bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF495EOX, ENCFF505LMS, ENCFF643CGH 6292929572 ENCODE Processing Pipeline 4c5a20e545ccf7ca89405198c314a66f https://www.encodeproject.org/files/ENCFF131UWG/@@download/ENCFF131UWG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF605IDQ bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF495EOX, ENCFF505LMS, ENCFF807MUK 6288718521 ENCODE Processing Pipeline e16ee393cdc6ab36ddc6a7db4fd55af1 https://www.encodeproject.org/files/ENCFF605IDQ/@@download/ENCFF605IDQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF950DGA bigWig signal p-value ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF060YYI, ENCFF182WHU 1598193921 ENCODE Processing Pipeline 0e8d3984de46829aa1ba595bd730232b https://www.encodeproject.org/files/ENCFF950DGA/@@download/ENCFF950DGA.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF581WIN bigWig signal p-value ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF605IDQ 1683545035 ENCODE Processing Pipeline 10fdb14efd4519c2354d0a633bf1ab05 https://www.encodeproject.org/files/ENCFF581WIN/@@download/ENCFF581WIN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF610BYP bigWig signal p-value ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF060YYI, ENCFF182WHU, ENCFF605IDQ 1946638420 ENCODE Processing Pipeline f64c0a9e73af3eac7cef57c8b32515d0 https://www.encodeproject.org/files/ENCFF610BYP/@@download/ENCFF610BYP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF652CRL bigWig fold change over control ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF605IDQ 1961388937 ENCODE Processing Pipeline 0310edfe17763c597faeba29ed64a8a7 https://www.encodeproject.org/files/ENCFF652CRL/@@download/ENCFF652CRL.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF783HMG bigWig fold change over control ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF060YYI, ENCFF182WHU, ENCFF605IDQ 2540446150 ENCODE Processing Pipeline f18ca7ed87c9b1e00d450c7b7c73ff96 https://www.encodeproject.org/files/ENCFF783HMG/@@download/ENCFF783HMG.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF072YAR bigWig fold change over control ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF060YYI, ENCFF182WHU 1735417165 ENCODE Processing Pipeline 1933275cede1316cda2ac1871ed1e8ef https://www.encodeproject.org/files/ENCFF072YAR/@@download/ENCFF072YAR.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF347MRT bigBed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF281WOI 13265756 ENCODE Processing Pipeline 9dbfe7e213b143f17bf030526ff58524 https://www.encodeproject.org/files/ENCFF347MRT/@@download/ENCFF347MRT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF281WOI bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF060YYI, ENCFF182WHU 7201615 ENCODE Processing Pipeline 9d6de6f788a22a14a3482fff1d2afe43 https://www.encodeproject.org/files/ENCFF281WOI/@@download/ENCFF281WOI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF875JQT bed narrowPeak optimal idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF120WDD, ENCFF281WOI, ENCFF494VDO 697059 ENCODE Processing Pipeline 14f94ab146635cd38c20b4c4673c1514 https://www.encodeproject.org/files/ENCFF875JQT/@@download/ENCFF875JQT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF467AMU bed narrowPeak conservative idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF001TDO, ENCFF120WDD, ENCFF281WOI, ENCFF494VDO 554115 ENCODE Processing Pipeline 73a069e576af0d92b7605adc93f2a3b6 https://www.encodeproject.org/files/ENCFF467AMU/@@download/ENCFF467AMU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF120WDD bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF060YYI, ENCFF182WHU, ENCFF605IDQ 7356224 ENCODE Processing Pipeline e6b58aa0f581e10b54bdb93fc9dfb8e1 https://www.encodeproject.org/files/ENCFF120WDD/@@download/ENCFF120WDD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF649BUJ bigBed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF120WDD 13291299 ENCODE Processing Pipeline a571df53e74875b79b9a5cc5837820f1 https://www.encodeproject.org/files/ENCFF649BUJ/@@download/ENCFF649BUJ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF494VDO bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF605IDQ 7245620 ENCODE Processing Pipeline 312b276e8903eb3cb4d9a16cf726515d https://www.encodeproject.org/files/ENCFF494VDO/@@download/ENCFF494VDO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF464WJH bigBed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF494VDO 13305041 ENCODE Processing Pipeline 2f6cb6e3ee34d521a236f9449f8b9f30 https://www.encodeproject.org/files/ENCFF464WJH/@@download/ENCFF464WJH.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF140PYQ bigBed narrowPeak conservative idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF467AMU 986553 ENCODE Processing Pipeline 9b20e000e6953aa087d212dee50c9e1a https://www.encodeproject.org/files/ENCFF140PYQ/@@download/ENCFF140PYQ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF461YWY bigBed narrowPeak optimal idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF875JQT 1195369 ENCODE Processing Pipeline 9d4db74b3aa680f23efece0316f97579 https://www.encodeproject.org/files/ENCFF461YWY/@@download/ENCFF461YWY.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF006BIR bigWig signal p-value ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF131UWG, ENCFF810LLR 1746149323 ENCODE Processing Pipeline 812c83d795b7adddf905ca950754ab93 https://www.encodeproject.org/files/ENCFF006BIR/@@download/ENCFF006BIR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF319YLC bigWig signal p-value ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF076IGY, ENCFF810LLR 1650425825 ENCODE Processing Pipeline 78f6ee78f8ff292ab43aef4e9a1de159 https://www.encodeproject.org/files/ENCFF319YLC/@@download/ENCFF319YLC.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF932EQB bigWig fold change over control ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF131UWG, ENCFF810LLR 1996761370 ENCODE Processing Pipeline 89466ae74811808c9c0b43c5cf6454f3 https://www.encodeproject.org/files/ENCFF932EQB/@@download/ENCFF932EQB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF723JJT bigWig fold change over control ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF076IGY, ENCFF810LLR 1714268208 ENCODE Processing Pipeline fa545e4d1a9a1b231faf84a1cd68782f https://www.encodeproject.org/files/ENCFF723JJT/@@download/ENCFF723JJT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF859JMS bigWig signal p-value ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF076IGY, ENCFF131UWG, ENCFF810LLR 1925777325 ENCODE Processing Pipeline 08d5b84b16620eb798b8a8ac13efbbc2 https://www.encodeproject.org/files/ENCFF859JMS/@@download/ENCFF859JMS.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF600OCW bigWig fold change over control ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF076IGY, ENCFF131UWG, ENCFF810LLR 2518382619 ENCODE Processing Pipeline 1daa119f510ddf68015122e7f1ec95dc https://www.encodeproject.org/files/ENCFF600OCW/@@download/ENCFF600OCW.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF195TOD bigBed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF326XVX 13310800 ENCODE Processing Pipeline bb8ee215e7a6b0dafe436e59b5388532 https://www.encodeproject.org/files/ENCFF195TOD/@@download/ENCFF195TOD.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF007LIV bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF076IGY, ENCFF131UWG, ENCFF810LLR 7351642 ENCODE Processing Pipeline 1ccf26acf0dcc50ce2da96ae8acf400d https://www.encodeproject.org/files/ENCFF007LIV/@@download/ENCFF007LIV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF326XVX bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF131UWG, ENCFF810LLR 7223496 ENCODE Processing Pipeline 632d483c6afb1bfe38ebd05f8c8f2708 https://www.encodeproject.org/files/ENCFF326XVX/@@download/ENCFF326XVX.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF587QGZ bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF076IGY, ENCFF810LLR 7170435 ENCODE Processing Pipeline eaafd20f98cccadaeb26be64e352e16c https://www.encodeproject.org/files/ENCFF587QGZ/@@download/ENCFF587QGZ.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF553RWU bed narrowPeak conservative idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF007LIV, ENCFF326XVX, ENCFF419RSJ, ENCFF587QGZ 554118 ENCODE Processing Pipeline dc02977bdc3d0310dd47b816d7932a85 https://www.encodeproject.org/files/ENCFF553RWU/@@download/ENCFF553RWU.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF672TYZ bigBed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF587QGZ 13274854 ENCODE Processing Pipeline 32568ce61a1f588674b5c5e85b1fd5bd https://www.encodeproject.org/files/ENCFF672TYZ/@@download/ENCFF672TYZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF884TRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF496WZS 1196788 ENCODE Processing Pipeline 3dc33eb4303e261bd50743b5c376b2b8 https://www.encodeproject.org/files/ENCFF884TRZ/@@download/ENCFF884TRZ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF580IRT bigBed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF007LIV 13294802 ENCODE Processing Pipeline 235e1a3287d1f7487b71d08d42559c04 https://www.encodeproject.org/files/ENCFF580IRT/@@download/ENCFF580IRT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF496WZS bed narrowPeak optimal idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF007LIV, ENCFF326XVX, ENCFF419RSJ, ENCFF587QGZ 696637 ENCODE Processing Pipeline aa782a8a05b2353440b0e58362330779 https://www.encodeproject.org/files/ENCFF496WZS/@@download/ENCFF496WZS.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF161AZQ bigBed narrowPeak conservative idr thresholded peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1, 2 ENCFF553RWU 988380 ENCODE Processing Pipeline e2279eca77f09a8c19f7e198c48376b1 https://www.encodeproject.org/files/ENCFF161AZQ/@@download/ENCFF161AZQ.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF773GSC bam unfiltered alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 76 ENCFF601GHH, ENCFF733LFK, ENCFF807MUK 4153476634 ENCODE Processing Pipeline 12d000a4c4964e3dd3b6fa5de1aa2967 https://www.encodeproject.org/files/ENCFF773GSC/@@download/ENCFF773GSC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF173BNV bam unfiltered alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 76 ENCFF807MUK, ENCFF855LSJ, ENCFF983UPK 5467594373 ENCODE Processing Pipeline 1361f1a60c0e6c6eb8e85685b99ad43f https://www.encodeproject.org/files/ENCFF173BNV/@@download/ENCFF173BNV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF855LSJ fastq reads ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 1 76 paired-ended 1 ENCFF983UPK 2298846749 Bradley Bernstein, Broad 7f06516b704a14680177fbf9501ba6de https://www.encodeproject.org/files/ENCFF855LSJ/@@download/ENCFF855LSJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF356KJM/, /files/ENCFF557IJC/, /files/ENCFF765UYP/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF983UPK fastq reads ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 1 76 paired-ended 2 ENCFF855LSJ 2268262597 Bradley Bernstein, Broad 245c88e74770df5e4f615eba9eb73549 https://www.encodeproject.org/files/ENCFF983UPK/@@download/ENCFF983UPK.fastq.gz Illumina HiSeq 2500 /files/ENCFF698BKU/, /files/ENCFF758JBV/, /files/ENCFF808PAO/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF733LFK fastq reads ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 1 76 paired-ended 1 ENCFF601GHH 1690332791 Bradley Bernstein, Broad 35b31a47f5f1eb1b79338848c48a5378 https://www.encodeproject.org/files/ENCFF733LFK/@@download/ENCFF733LFK.fastq.gz Illumina HiSeq 2500 /files/ENCFF279GKI/, /files/ENCFF837SVG/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF601GHH fastq reads ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 1 76 paired-ended 2 ENCFF733LFK 1759344038 Bradley Bernstein, Broad 8693cc9e295a553e63db2c1fb11b79a7 https://www.encodeproject.org/files/ENCFF601GHH/@@download/ENCFF601GHH.fastq.gz Illumina HiSeq 2500 /files/ENCFF327EQZ/, /files/ENCFF413GTS/ released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF934QBD bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF601GHH, ENCFF733LFK, ENCFF807MUK 1374455592 ENCODE Processing Pipeline a5b8750687dc7ea3c49ba137de26b70a https://www.encodeproject.org/files/ENCFF934QBD/@@download/ENCFF934QBD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF228HDI bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF807MUK, ENCFF855LSJ, ENCFF983UPK 4302666504 ENCODE Processing Pipeline 6b00f888614673382e6b3ca29bdafe0a https://www.encodeproject.org/files/ENCFF228HDI/@@download/ENCFF228HDI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF803MUP bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 76 ENCFF643CGH, ENCFF855LSJ, ENCFF983UPK 4302449535 ENCODE Processing Pipeline b0ae470af5e71b1a0b04ed9ff7fc7fc3 https://www.encodeproject.org/files/ENCFF803MUP/@@download/ENCFF803MUP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF774GFW bam unfiltered alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 76 ENCFF601GHH, ENCFF643CGH, ENCFF733LFK 4161433348 ENCODE Processing Pipeline d67860443d04b45930ccfbd48efd5b41 https://www.encodeproject.org/files/ENCFF774GFW/@@download/ENCFF774GFW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF956ESG bam unfiltered alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 76 ENCFF643CGH, ENCFF855LSJ, ENCFF983UPK 5486818558 ENCODE Processing Pipeline b10dff6240b3e7d20d32443348437d79 https://www.encodeproject.org/files/ENCFF956ESG/@@download/ENCFF956ESG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF053VXH bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 76 ENCFF601GHH, ENCFF643CGH, ENCFF733LFK 1374200489 ENCODE Processing Pipeline d28410cc4f350053139e1969d281aeae https://www.encodeproject.org/files/ENCFF053VXH/@@download/ENCFF053VXH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF688IID bigWig signal p-value ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF050WDN, ENCFF238MHO, ENCFF934QBD 1673419426 ENCODE Processing Pipeline 90c96c99f07eddf82ead460f845fc1f9 https://www.encodeproject.org/files/ENCFF688IID/@@download/ENCFF688IID.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF750EJJ bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO, ENCFF934QBD 7021769 ENCODE Processing Pipeline e5a2a8b327fc4d816bce9e872f4f48f6 https://www.encodeproject.org/files/ENCFF750EJJ/@@download/ENCFF750EJJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF202CBK bigBed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF750EJJ 13512744 ENCODE Processing Pipeline 73a38ad946c7a4e99ba228a2233b934b https://www.encodeproject.org/files/ENCFF202CBK/@@download/ENCFF202CBK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF924XFS bed narrowPeak optimal idr thresholded peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF001TDO, ENCFF086DEW, ENCFF750EJJ, ENCFF848FMM 1016167 ENCODE Processing Pipeline 18e6e79e3172d18987ed0ed4bcf0426a https://www.encodeproject.org/files/ENCFF924XFS/@@download/ENCFF924XFS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF004TQX bigWig signal p-value ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF053VXH, ENCFF446RUP, ENCFF803MUP, ENCFF960WRQ 2291280454 ENCODE Processing Pipeline 4c72d25a100fa0d89d818d8f09a6e5df https://www.encodeproject.org/files/ENCFF004TQX/@@download/ENCFF004TQX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF053KYN bigWig fold change over control ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF050WDN, ENCFF238MHO, ENCFF934QBD 1046231358 ENCODE Processing Pipeline aa62db53432075b2bf65dc2b25ae92c9 https://www.encodeproject.org/files/ENCFF053KYN/@@download/ENCFF053KYN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF271AKN bigWig signal p-value ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF053VXH, ENCFF446RUP, ENCFF960WRQ 1700204517 ENCODE Processing Pipeline b7e3c23597bcabc5146cd91f4ff0bfce https://www.encodeproject.org/files/ENCFF271AKN/@@download/ENCFF271AKN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF258IMY bigWig fold change over control ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO, ENCFF934QBD 2279916578 ENCODE Processing Pipeline 6b8c52a30b18301840c94bdd3443d044 https://www.encodeproject.org/files/ENCFF258IMY/@@download/ENCFF258IMY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF221OLN bigBed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF086DEW 11402287 ENCODE Processing Pipeline 4ea5d9436a60a3bffde391781a1e25e6 https://www.encodeproject.org/files/ENCFF221OLN/@@download/ENCFF221OLN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF873LOY bigWig signal p-value ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO 2060493872 ENCODE Processing Pipeline 02ee64b370cbaa8159770130c482ab62 https://www.encodeproject.org/files/ENCFF873LOY/@@download/ENCFF873LOY.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF222BNS bigWig fold change over control ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO 2077488095 ENCODE Processing Pipeline a165c65aeb4d3094794a4c61590e7da4 https://www.encodeproject.org/files/ENCFF222BNS/@@download/ENCFF222BNS.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF086DEW bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF050WDN, ENCFF238MHO, ENCFF934QBD 6179336 ENCODE Processing Pipeline 97c599d1072e34bae8d4ead3ccbf6c97 https://www.encodeproject.org/files/ENCFF086DEW/@@download/ENCFF086DEW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF848FMM bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO 6997649 ENCODE Processing Pipeline 98c3da9f35a16790aaebe52c53b2c120 https://www.encodeproject.org/files/ENCFF848FMM/@@download/ENCFF848FMM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF160SZM bigBed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF848FMM 13579598 ENCODE Processing Pipeline 16ccb83aae921784a795517fa312f5ae https://www.encodeproject.org/files/ENCFF160SZM/@@download/ENCFF160SZM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF542ZZL bigBed narrowPeak optimal idr thresholded peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF924XFS 1860975 ENCODE Processing Pipeline 4d96db12a5a00a2d0847879c1e075e51 https://www.encodeproject.org/files/ENCFF542ZZL/@@download/ENCFF542ZZL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF682TWJ bigWig fold change over control ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF446RUP, ENCFF803MUP, ENCFF960WRQ 2079714959 ENCODE Processing Pipeline 1525b75962884b9f4104b5a530a7cf57 https://www.encodeproject.org/files/ENCFF682TWJ/@@download/ENCFF682TWJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF647PUR bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF053VXH, ENCFF446RUP, ENCFF960WRQ 6227692 ENCODE Processing Pipeline 1b3e4d688ac7f2b6b351d4779038a708 https://www.encodeproject.org/files/ENCFF647PUR/@@download/ENCFF647PUR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF166CHU bigBed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF033ION 13585835 ENCODE Processing Pipeline 7e5373beb04b26a040a88ce66fd2d2a6 https://www.encodeproject.org/files/ENCFF166CHU/@@download/ENCFF166CHU.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF424FCN bigWig signal p-value ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO, ENCFF934QBD 2129092860 ENCODE Processing Pipeline 0daa847f42cb2ddfb00afbeceee15752 https://www.encodeproject.org/files/ENCFF424FCN/@@download/ENCFF424FCN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF846CIQ bigWig fold change over control ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF053VXH, ENCFF446RUP, ENCFF960WRQ 1044830600 ENCODE Processing Pipeline 63be0ee9eadcfcdc749e063feac47a17 https://www.encodeproject.org/files/ENCFF846CIQ/@@download/ENCFF846CIQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF033ION bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF446RUP, ENCFF803MUP, ENCFF960WRQ 6997581 ENCODE Processing Pipeline eae3123bcd941b3e437d82e848216235 https://www.encodeproject.org/files/ENCFF033ION/@@download/ENCFF033ION.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF470PQM bigWig signal p-value ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF446RUP, ENCFF803MUP, ENCFF960WRQ 2087804029 ENCODE Processing Pipeline 680275b4c1144a4b078b4f49e8a3a954 https://www.encodeproject.org/files/ENCFF470PQM/@@download/ENCFF470PQM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF860LFC bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF053VXH, ENCFF446RUP, ENCFF803MUP, ENCFF960WRQ 7181695 ENCODE Processing Pipeline a873cdd231584e856c313f2da43829fa https://www.encodeproject.org/files/ENCFF860LFC/@@download/ENCFF860LFC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF213DTH bigBed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF647PUR 11499280 ENCODE Processing Pipeline 7b3d754d3103543230d1981bb905a451 https://www.encodeproject.org/files/ENCFF213DTH/@@download/ENCFF213DTH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF359IOV bigBed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF860LFC 13721233 ENCODE Processing Pipeline f08a4399274aee38aef0cd33a7c93503 https://www.encodeproject.org/files/ENCFF359IOV/@@download/ENCFF359IOV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF259KAD bed narrowPeak optimal idr thresholded peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF033ION, ENCFF419RSJ, ENCFF647PUR, ENCFF860LFC 1060181 ENCODE Processing Pipeline 75867bacbaea7a8eb07d443bb98dde24 https://www.encodeproject.org/files/ENCFF259KAD/@@download/ENCFF259KAD.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF980KDY bigBed narrowPeak optimal idr thresholded peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF259KAD 2440529 ENCODE Processing Pipeline 0b36e9fc49c04c28354a476153b2faa5 https://www.encodeproject.org/files/ENCFF980KDY/@@download/ENCFF980KDY.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF175OKQ bigWig fold change over control ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1, 2 ENCFF053VXH, ENCFF446RUP, ENCFF803MUP, ENCFF960WRQ 2278823366 ENCODE Processing Pipeline edeb51f7253b954a4e04eeeda325f332 https://www.encodeproject.org/files/ENCFF175OKQ/@@download/ENCFF175OKQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF000YZD bam alignments ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YZT 888150945 Kevin Struhl, HMS f89edea95e1d8af854421e90b6842d7a https://www.encodeproject.org/files/ENCFF000YZD/@@download/ENCFF000YZD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YZE bam alignments ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YZS 850930514 Kevin Struhl, HMS 19b5db27dc65d827df791f5268d62140 https://www.encodeproject.org/files/ENCFF000YZE/@@download/ENCFF000YZE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YZF bigBed narrowPeak peaks ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOR 96120 Kevin Struhl, HMS e3e0c46fc49cd0574659d6fee4122818 https://www.encodeproject.org/files/ENCFF000YZF/@@download/ENCFF000YZF.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YZG bigWig signal ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 380324231 Kevin Struhl, HMS 36761ef5b27aa91da8a5c475699f8b7f https://www.encodeproject.org/files/ENCFF000YZG/@@download/ENCFF000YZG.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YZS fastq reads ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 696677860 Kevin Struhl, HMS 61d830fa023f177819458534ad23fb26 https://www.encodeproject.org/files/ENCFF000YZS/@@download/ENCFF000YZS.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF000YZT fastq reads ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 732547020 Kevin Struhl, HMS bba6e95a018d2007131ad94b955d38d0 https://www.encodeproject.org/files/ENCFF000YZT/@@download/ENCFF000YZT.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF001VOR bed narrowPeak peaks ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 11275 Kevin Struhl, HMS 4b8fa5ee502da30b76a77d4a727c3bc9 https://www.encodeproject.org/files/ENCFF001VOR/@@download/ENCFF001VOR.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CXZ bed narrowPeak optimal idr thresholded peaks ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 59038 ENCODE Consortium Analysis Working Group a4825e3644d78fd762ac3b567f9c698a https://www.encodeproject.org/files/ENCFF002CXZ/@@download/ENCFF002CXZ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF144SVY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXZ 190797 ENCODE Consortium 39a45a8a6ae45ac7bf6cb9c653b73c2e https://www.encodeproject.org/files/ENCFF144SVY/@@download/ENCFF144SVY.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF331WGA bam unfiltered alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 76 ENCFF264DQN, ENCFF775QDK, ENCFF807MUK 5418707023 ENCODE Processing Pipeline d275a53836859af44a1f5e4d9887176c https://www.encodeproject.org/files/ENCFF331WGA/@@download/ENCFF331WGA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF357GWL bam unfiltered alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF357EHL, ENCFF603IPW, ENCFF807MUK 5510294344 ENCODE Processing Pipeline df26fc987f23abc7f1512b9e9c936292 https://www.encodeproject.org/files/ENCFF357GWL/@@download/ENCFF357GWL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF357EHL fastq reads ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 paired-ended 1 ENCFF603IPW 2313563735 Bradley Bernstein, Broad bf0bb61b161ab8acb694d6ed1f86795b https://www.encodeproject.org/files/ENCFF357EHL/@@download/ENCFF357EHL.fastq.gz Illumina HiSeq 2500 /files/ENCFF072EIX/, /files/ENCFF443LZC/, /files/ENCFF458ASE/, /files/ENCFF615LEB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF603IPW fastq reads ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 paired-ended 2 ENCFF357EHL 2277926267 Bradley Bernstein, Broad c8d1197dd54fcf58cb09628f60e61f41 https://www.encodeproject.org/files/ENCFF603IPW/@@download/ENCFF603IPW.fastq.gz Illumina HiSeq 2500 /files/ENCFF072EIX/, /files/ENCFF443LZC/, /files/ENCFF458ASE/, /files/ENCFF615LEB/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF775QDK fastq reads ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 1 76 paired-ended 1 ENCFF264DQN 2208719914 Bradley Bernstein, Broad 8cb96ed42606902307d6f82989091812 https://www.encodeproject.org/files/ENCFF775QDK/@@download/ENCFF775QDK.fastq.gz Illumina HiSeq 2000 /files/ENCFF269SMY/, /files/ENCFF591CAT/, /files/ENCFF625FBR/, /files/ENCFF878ZLP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF264DQN fastq reads ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 1 76 paired-ended 2 ENCFF775QDK 2203748508 Bradley Bernstein, Broad d46ba953b04eeb42b48b05f60d41e6af https://www.encodeproject.org/files/ENCFF264DQN/@@download/ENCFF264DQN.fastq.gz Illumina HiSeq 2000 /files/ENCFF269SMY/, /files/ENCFF591CAT/, /files/ENCFF625FBR/, /files/ENCFF878ZLP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF995SUS bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF357EHL, ENCFF603IPW, ENCFF807MUK 3902590516 ENCODE Processing Pipeline d7266e88e779cd6c1f900865517b9a91 https://www.encodeproject.org/files/ENCFF995SUS/@@download/ENCFF995SUS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF604AUO bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF264DQN, ENCFF775QDK, ENCFF807MUK 3659185500 ENCODE Processing Pipeline d13b503978a124f06fe8dc56e2946f15 https://www.encodeproject.org/files/ENCFF604AUO/@@download/ENCFF604AUO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF729SHE bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF357EHL, ENCFF603IPW, ENCFF643CGH 3903325338 ENCODE Processing Pipeline 6c2f0ecaa15c642486c05bfb9d208a04 https://www.encodeproject.org/files/ENCFF729SHE/@@download/ENCFF729SHE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF075MLJ bam unfiltered alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF357EHL, ENCFF603IPW, ENCFF643CGH 5524360457 ENCODE Processing Pipeline 98ef65c8e3b85d20425293982b4c0fe2 https://www.encodeproject.org/files/ENCFF075MLJ/@@download/ENCFF075MLJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF974VPG bam unfiltered alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 76 ENCFF264DQN, ENCFF643CGH, ENCFF775QDK 5433905142 ENCODE Processing Pipeline cad154a3efa8cd7fa92eeceb7570fcc5 https://www.encodeproject.org/files/ENCFF974VPG/@@download/ENCFF974VPG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF044YLT bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 76 ENCFF264DQN, ENCFF643CGH, ENCFF775QDK 3659017765 ENCODE Processing Pipeline 53ab2dbc1f83cf92931286898548131e https://www.encodeproject.org/files/ENCFF044YLT/@@download/ENCFF044YLT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF031JNH bigWig fold change over control ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF044YLT, ENCFF497JDI, ENCFF729SHE, ENCFF959FMO 2341788906 ENCODE Processing Pipeline 3c7df5fdbe0ab8df2c14be02f49a566a https://www.encodeproject.org/files/ENCFF031JNH/@@download/ENCFF031JNH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF558GYL bigWig signal p-value ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF497JDI, ENCFF729SHE, ENCFF959FMO 1879895656 ENCODE Processing Pipeline b96964af34b19f58f3cf389275a9a5e3 https://www.encodeproject.org/files/ENCFF558GYL/@@download/ENCFF558GYL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF120NJK bigWig fold change over control ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF044YLT, ENCFF497JDI, ENCFF959FMO 1716521415 ENCODE Processing Pipeline c6bf819a1628353a46e356e9b28fd8f1 https://www.encodeproject.org/files/ENCFF120NJK/@@download/ENCFF120NJK.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF309HSE bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF044YLT, ENCFF497JDI, ENCFF729SHE, ENCFF959FMO 7039979 ENCODE Processing Pipeline 386b5443a9404405ce4c51d3c913516d https://www.encodeproject.org/files/ENCFF309HSE/@@download/ENCFF309HSE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF460KQV bigBed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF386SKY 13873086 ENCODE Processing Pipeline ef1c3c967773c60a5708cf6d8e56c9ab https://www.encodeproject.org/files/ENCFF460KQV/@@download/ENCFF460KQV.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF152LHZ bigBed narrowPeak conservative idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF110KJR 1988440 ENCODE Processing Pipeline 63c840d8b0047140d73450bd72e2d496 https://www.encodeproject.org/files/ENCFF152LHZ/@@download/ENCFF152LHZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF216OJD bigWig fold change over control ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF497JDI, ENCFF729SHE, ENCFF959FMO 1855290264 ENCODE Processing Pipeline 22388b9ea0c500827c0af56afbe947e4 https://www.encodeproject.org/files/ENCFF216OJD/@@download/ENCFF216OJD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF339DPL bigWig signal p-value ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF044YLT, ENCFF497JDI, ENCFF959FMO 1951475622 ENCODE Processing Pipeline b20c1f8a7feef08a1396c5a5add81ad5 https://www.encodeproject.org/files/ENCFF339DPL/@@download/ENCFF339DPL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF389TVG bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF497JDI, ENCFF729SHE, ENCFF959FMO 6699747 ENCODE Processing Pipeline 5d5f05c224e1396790ce7fd608ddd013 https://www.encodeproject.org/files/ENCFF389TVG/@@download/ENCFF389TVG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF024JJT bigWig fold change over control ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD, ENCFF995SUS 2329249833 ENCODE Processing Pipeline 188423c8b5cdcadf1ff14b2e1dbd0393 https://www.encodeproject.org/files/ENCFF024JJT/@@download/ENCFF024JJT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF386SKY bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF044YLT, ENCFF497JDI, ENCFF959FMO 6728677 ENCODE Processing Pipeline f5db7fa88285667a4f49efc50570a0e9 https://www.encodeproject.org/files/ENCFF386SKY/@@download/ENCFF386SKY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF740VJL bigBed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF309HSE 14003054 ENCODE Processing Pipeline 95c1c74b8fa93a02f10c3fbadf8c43c6 https://www.encodeproject.org/files/ENCFF740VJL/@@download/ENCFF740VJL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF110KJR bed narrowPeak conservative idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF309HSE, ENCFF386SKY, ENCFF389TVG, ENCFF419RSJ 1012623 ENCODE Processing Pipeline e4af7e1bf968ff69acf82a693b7f8bef https://www.encodeproject.org/files/ENCFF110KJR/@@download/ENCFF110KJR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF685KTA bed narrowPeak optimal idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF309HSE, ENCFF386SKY, ENCFF389TVG, ENCFF419RSJ 1038409 ENCODE Processing Pipeline 4c8818285f416a3943e64bef2a8b4dfc https://www.encodeproject.org/files/ENCFF685KTA/@@download/ENCFF685KTA.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF733AOC bigWig signal p-value ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF044YLT, ENCFF497JDI, ENCFF729SHE, ENCFF959FMO 1965234794 ENCODE Processing Pipeline 216c10a0d11abd1722bade50b0143037 https://www.encodeproject.org/files/ENCFF733AOC/@@download/ENCFF733AOC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF017WKL bigBed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF389TVG 11673072 ENCODE Processing Pipeline eff472ddc6cb2b87fb16e795310a2d10 https://www.encodeproject.org/files/ENCFF017WKL/@@download/ENCFF017WKL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF986TRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF685KTA 2036298 ENCODE Processing Pipeline b100e79d74c3473bcc4584219b3fa658 https://www.encodeproject.org/files/ENCFF986TRQ/@@download/ENCFF986TRQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF399EZO bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD, ENCFF995SUS 7111021 ENCODE Processing Pipeline bcc015959a99d7ddfe063520ff3d334a https://www.encodeproject.org/files/ENCFF399EZO/@@download/ENCFF399EZO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF925UYP bigBed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF399EZO 14076549 ENCODE Processing Pipeline a95e5faad2d54e02b54616a0485ee7a6 https://www.encodeproject.org/files/ENCFF925UYP/@@download/ENCFF925UYP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF207UYN bigBed narrowPeak conservative idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF766YOT 2006934 ENCODE Processing Pipeline 3b9e1d6ac247c9762c2a0ccc154b68a1 https://www.encodeproject.org/files/ENCFF207UYN/@@download/ENCFF207UYN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF488KDC bigBed narrowPeak optimal idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF403SBB 2055517 ENCODE Processing Pipeline 497aceb85f386ed16b5d2511cae7a5db https://www.encodeproject.org/files/ENCFF488KDC/@@download/ENCFF488KDC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF328OVL bigWig fold change over control ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF110XXU, ENCFF989ZJD, ENCFF995SUS 1853339394 ENCODE Processing Pipeline 2ca051420a46ace37ed8f8337a194469 https://www.encodeproject.org/files/ENCFF328OVL/@@download/ENCFF328OVL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF519MIS bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF110XXU, ENCFF989ZJD, ENCFF995SUS 6828886 ENCODE Processing Pipeline 0d6b3d4ec9153dedd86eccc6fe80f475 https://www.encodeproject.org/files/ENCFF519MIS/@@download/ENCFF519MIS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF877EOT bigBed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF519MIS 11815690 ENCODE Processing Pipeline bd0531749e726119a4c330636997904a https://www.encodeproject.org/files/ENCFF877EOT/@@download/ENCFF877EOT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF167FXE bigBed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF040XUI 13879428 ENCODE Processing Pipeline 4aeddbba362915d103955a9b3cf27373 https://www.encodeproject.org/files/ENCFF167FXE/@@download/ENCFF167FXE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF403SBB bed narrowPeak optimal idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF040XUI, ENCFF399EZO, ENCFF519MIS 1050603 ENCODE Processing Pipeline 0e395f73816b021cc996d73f8b1fa49c https://www.encodeproject.org/files/ENCFF403SBB/@@download/ENCFF403SBB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF588HLS bigWig fold change over control ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD 1710118356 ENCODE Processing Pipeline 1f6d4a96f22ae7b1ea3843b116f015d5 https://www.encodeproject.org/files/ENCFF588HLS/@@download/ENCFF588HLS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF516ZJC bigWig signal p-value ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF110XXU, ENCFF989ZJD, ENCFF995SUS 1987619423 ENCODE Processing Pipeline f866abc70f4b4e30a8f450284e3c1e5b https://www.encodeproject.org/files/ENCFF516ZJC/@@download/ENCFF516ZJC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF631ARF bigWig signal p-value ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD 1962152631 ENCODE Processing Pipeline 91a5535fe65dacc3bcd69040b2b9a8dd https://www.encodeproject.org/files/ENCFF631ARF/@@download/ENCFF631ARF.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF150WNY bigWig signal p-value ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD, ENCFF995SUS 2134747820 ENCODE Processing Pipeline 73d0d9a9d2664c48448febc38aa61eab https://www.encodeproject.org/files/ENCFF150WNY/@@download/ENCFF150WNY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF040XUI bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD 6747781 ENCODE Processing Pipeline 7f0f219157010c15dacec296cb2c94b3 https://www.encodeproject.org/files/ENCFF040XUI/@@download/ENCFF040XUI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF766YOT bed narrowPeak conservative idr thresholded peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1, 2 ENCFF001TDO, ENCFF040XUI, ENCFF399EZO, ENCFF519MIS 1024896 ENCODE Processing Pipeline 2590b710fa49879ea284be3ace7c0dcc https://www.encodeproject.org/files/ENCFF766YOT/@@download/ENCFF766YOT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF136VQP fastq reads ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 491056839 Xiang-Dong Fu, UCSD c3e267afb9c37e2fcc5efe879b02e5cc https://www.encodeproject.org/files/ENCFF136VQP/@@download/ENCFF136VQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF911KYO/ released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF183BQH fastq reads ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 437525322 Xiang-Dong Fu, UCSD c89ab6b450715a54b23e8430a2d9563f https://www.encodeproject.org/files/ENCFF183BQH/@@download/ENCFF183BQH.fastq.gz Illumina HiSeq 2000 /files/ENCFF113ZAT/ released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF541GVQ bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF183BQH, ENCFF807MUK 449089321 ENCODE Processing Pipeline b4b9a5f3f489abc3a5e1f44ccf138a43 https://www.encodeproject.org/files/ENCFF541GVQ/@@download/ENCFF541GVQ.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF703DOA bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF136VQP, ENCFF807MUK 512025706 ENCODE Processing Pipeline 69519343284f633ceac9ff3ba2077c6c https://www.encodeproject.org/files/ENCFF703DOA/@@download/ENCFF703DOA.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF115LZU bigWig signal p-value ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF703DOA, ENCFF851QFR 538469283 ENCODE Processing Pipeline 933bc1949556bd8f5402a0e9557a637c https://www.encodeproject.org/files/ENCFF115LZU/@@download/ENCFF115LZU.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF385JKY bigWig signal p-value ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF541GVQ, ENCFF703DOA, ENCFF851QFR, ENCFF922JGL 956527340 ENCODE Processing Pipeline 70ff16f9cf4c6a3392893af70887bcbf https://www.encodeproject.org/files/ENCFF385JKY/@@download/ENCFF385JKY.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF616MIL bigWig fold change over control ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF703DOA, ENCFF851QFR 356284965 ENCODE Processing Pipeline 7ce41afdcd2daede059315a5f232cffe https://www.encodeproject.org/files/ENCFF616MIL/@@download/ENCFF616MIL.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF749ZPC bigWig signal p-value ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF541GVQ, ENCFF922JGL 535868622 ENCODE Processing Pipeline 725f918d38e458b1c036a8f30bcfcadf https://www.encodeproject.org/files/ENCFF749ZPC/@@download/ENCFF749ZPC.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF474MKH bigWig fold change over control ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF541GVQ, ENCFF922JGL 308000380 ENCODE Processing Pipeline 5ff158b77ae78996c6e65007a976fca3 https://www.encodeproject.org/files/ENCFF474MKH/@@download/ENCFF474MKH.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF547QRA bigBed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF222MCF 11057926 ENCODE Processing Pipeline 1a1eaf81e4ad0c7dfc40bbb8f3240d83 https://www.encodeproject.org/files/ENCFF547QRA/@@download/ENCFF547QRA.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF169ZKI bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF541GVQ, ENCFF922JGL 5154718 ENCODE Processing Pipeline 6a4f993445e20144e700970ada0ca6d1 https://www.encodeproject.org/files/ENCFF169ZKI/@@download/ENCFF169ZKI.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF598FYN bigBed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF169ZKI 11016826 ENCODE Processing Pipeline 45403d5cd14b5dc36044291d7947d0a9 https://www.encodeproject.org/files/ENCFF598FYN/@@download/ENCFF598FYN.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF607NKZ bigBed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF690XME 13430971 ENCODE Processing Pipeline 618ea83a76ba0b2439ff606146b39ad8 https://www.encodeproject.org/files/ENCFF607NKZ/@@download/ENCFF607NKZ.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF878SUX bigWig fold change over control ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF541GVQ, ENCFF703DOA, ENCFF851QFR, ENCFF922JGL 782698127 ENCODE Processing Pipeline 645e8c75904aeba6cb79f1a1c81e23d7 https://www.encodeproject.org/files/ENCFF878SUX/@@download/ENCFF878SUX.bigWig hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF690XME bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF541GVQ, ENCFF703DOA, ENCFF851QFR, ENCFF922JGL 6477087 ENCODE Processing Pipeline c4aa812bf5b1fb63a3dda7f8bca556b4 https://www.encodeproject.org/files/ENCFF690XME/@@download/ENCFF690XME.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF222MCF bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF703DOA, ENCFF851QFR 5113942 ENCODE Processing Pipeline daa67ed21404762d9b3243f9edb73e63 https://www.encodeproject.org/files/ENCFF222MCF/@@download/ENCFF222MCF.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF616LSA bam unfiltered alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF183BQH, ENCFF643CGH 632192747 ENCODE Processing Pipeline 4c391849ae5878690ab9f800e44e9db5 https://www.encodeproject.org/files/ENCFF616LSA/@@download/ENCFF616LSA.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF375PAX bam unfiltered alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF136VQP, ENCFF643CGH 711901715 ENCODE Processing Pipeline 0eacca0f0d0ff98b99717f697dad5fe0 https://www.encodeproject.org/files/ENCFF375PAX/@@download/ENCFF375PAX.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF787ONF bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF183BQH, ENCFF643CGH 448713954 ENCODE Processing Pipeline 05fc97a60e52d05a3f5b706bd2b4474e https://www.encodeproject.org/files/ENCFF787ONF/@@download/ENCFF787ONF.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF228GPF bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF136VQP, ENCFF643CGH 511628537 ENCODE Processing Pipeline 03bab60039a1bb85a101987960cf8a95 https://www.encodeproject.org/files/ENCFF228GPF/@@download/ENCFF228GPF.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF843QJU bigWig signal p-value ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF787ONF 477347944 ENCODE Processing Pipeline c32e0981c7c970e796e1b097f0f628b6 https://www.encodeproject.org/files/ENCFF843QJU/@@download/ENCFF843QJU.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF330HXG bigWig signal p-value ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF228GPF, ENCFF787ONF 920750229 ENCODE Processing Pipeline 946af342a56596efe50db93a147a7983 https://www.encodeproject.org/files/ENCFF330HXG/@@download/ENCFF330HXG.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF668URC bigWig signal p-value ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF228GPF 470377393 ENCODE Processing Pipeline 91773bfdd4b004437598531b2585e57f https://www.encodeproject.org/files/ENCFF668URC/@@download/ENCFF668URC.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF491MXT bigWig fold change over control ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF787ONF 309162477 ENCODE Processing Pipeline 3a5ddcf7d0601c4a3f99f8ad89fd5b45 https://www.encodeproject.org/files/ENCFF491MXT/@@download/ENCFF491MXT.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF188YSK bigWig fold change over control ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF228GPF 343802659 ENCODE Processing Pipeline 03fd7e06ca1fc529fbba1b6863a20459 https://www.encodeproject.org/files/ENCFF188YSK/@@download/ENCFF188YSK.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF622FMX bigWig fold change over control ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF228GPF, ENCFF787ONF 767981784 ENCODE Processing Pipeline 3f3c60a6e6419bc33f5bab4c0e5c12ac https://www.encodeproject.org/files/ENCFF622FMX/@@download/ENCFF622FMX.bigWig GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF726NAA bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF787ONF 4584933 ENCODE Processing Pipeline 8bef1eaf746cda3b9342333873eace5d https://www.encodeproject.org/files/ENCFF726NAA/@@download/ENCFF726NAA.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF728TXA bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF228GPF, ENCFF787ONF 6116005 ENCODE Processing Pipeline b5079295d12dbf384cea987e322f9bb7 https://www.encodeproject.org/files/ENCFF728TXA/@@download/ENCFF728TXA.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF156ISN bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF228GPF 4799438 ENCODE Processing Pipeline e5ea60285d02f5c64dfd0a94a77763a0 https://www.encodeproject.org/files/ENCFF156ISN/@@download/ENCFF156ISN.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF538KLG bigBed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF156ISN 10982832 ENCODE Processing Pipeline a225095a12074bbdf373fd22c23b5083 https://www.encodeproject.org/files/ENCFF538KLG/@@download/ENCFF538KLG.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF214VKN bigBed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF726NAA 10840846 ENCODE Processing Pipeline 01479cbf6dbdddd7c8e771c5cb28d36c https://www.encodeproject.org/files/ENCFF214VKN/@@download/ENCFF214VKN.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF701IGN bigBed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF728TXA 11295360 ENCODE Processing Pipeline b2faa79d2bc88eb516d0f5af798761cb https://www.encodeproject.org/files/ENCFF701IGN/@@download/ENCFF701IGN.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF783LYO bigBed narrowPeak optimal idr thresholded peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF217HAW 34970 ENCODE Processing Pipeline a9bd3c08d5d1a86e6b9b3fd04be37079 https://www.encodeproject.org/files/ENCFF783LYO/@@download/ENCFF783LYO.bigBed GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF217HAW bed narrowPeak optimal idr thresholded peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF156ISN, ENCFF419RSJ, ENCFF726NAA, ENCFF728TXA 647 ENCODE Processing Pipeline ab86c3dadb50c09aed10410be667f6e8 https://www.encodeproject.org/files/ENCFF217HAW/@@download/ENCFF217HAW.bed.gz GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF265WRU bigBed narrowPeak conservative idr thresholded peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF500ZGP 15121 ENCODE Processing Pipeline aac04ab47606f4ab11f66b8da5e0e194 https://www.encodeproject.org/files/ENCFF265WRU/@@download/ENCFF265WRU.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF138MXI bigBed narrowPeak optimal idr thresholded peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF137IBM 15113 ENCODE Processing Pipeline 2570a908b2e3892ff558aec8d32d391a https://www.encodeproject.org/files/ENCFF138MXI/@@download/ENCFF138MXI.bigBed hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF500ZGP bed narrowPeak conservative idr thresholded peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF169ZKI, ENCFF222MCF, ENCFF690XME 532 ENCODE Processing Pipeline 381dcf2222849ee7affb9198706a007c https://www.encodeproject.org/files/ENCFF500ZGP/@@download/ENCFF500ZGP.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF137IBM bed narrowPeak optimal idr thresholded peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF169ZKI, ENCFF222MCF, ENCFF690XME 533 ENCODE Processing Pipeline 3da69747c2c7e765084cfddb90f40a51 https://www.encodeproject.org/files/ENCFF137IBM/@@download/ENCFF137IBM.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF551CHL bam unfiltered alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF136VQP, ENCFF807MUK 708450985 ENCODE Processing Pipeline e67a370dfb6b1708a4e13fd38d0f1ec7 https://www.encodeproject.org/files/ENCFF551CHL/@@download/ENCFF551CHL.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF533TTC bam unfiltered alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF183BQH, ENCFF807MUK 629270532 ENCODE Processing Pipeline af923b09cd3aff66b7c0b45ca43655ed https://www.encodeproject.org/files/ENCFF533TTC/@@download/ENCFF533TTC.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF958ONK fastq reads ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1305231981 Richard Myers, HAIB 36660716aea776e687ee414aa8d4f870 SRA:SRR5339371 https://www.encodeproject.org/files/ENCFF958ONK/@@download/ENCFF958ONK.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF895HBS fastq reads ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1268176591 Richard Myers, HAIB 7a48952aeeb58fc9a7443e762d7b8899 SRA:SRR5339370 https://www.encodeproject.org/files/ENCFF895HBS/@@download/ENCFF895HBS.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF368GUS bam unfiltered alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF958ONK 1562935747 ENCODE Processing Pipeline aa3161e9a160ecdefb313f920380382d https://www.encodeproject.org/files/ENCFF368GUS/@@download/ENCFF368GUS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF581GYI bam unfiltered alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF895HBS 1503683129 ENCODE Processing Pipeline b896adacb907bf839b44bf4459c075dc https://www.encodeproject.org/files/ENCFF581GYI/@@download/ENCFF581GYI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF569GDP bam unfiltered alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF958ONK 1566308234 ENCODE Processing Pipeline d0a9f847726582af568bbf058c5afea1 https://www.encodeproject.org/files/ENCFF569GDP/@@download/ENCFF569GDP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF166IIU bam unfiltered alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF895HBS 1500655975 ENCODE Processing Pipeline ffa8e724a7c584fb988827b421247f9d https://www.encodeproject.org/files/ENCFF166IIU/@@download/ENCFF166IIU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF709KRI bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF895HBS 1126521415 ENCODE Processing Pipeline 7f46888b0ebdf63bdff3765cb6bb5de7 https://www.encodeproject.org/files/ENCFF709KRI/@@download/ENCFF709KRI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617NGF bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF958ONK 1169491373 ENCODE Processing Pipeline 8f494c97b8868853d546698c54be8988 https://www.encodeproject.org/files/ENCFF617NGF/@@download/ENCFF617NGF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF538ZFY bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF895HBS 1126004109 ENCODE Processing Pipeline de74a2225ee5ea7ea8c508547b51bfb0 https://www.encodeproject.org/files/ENCFF538ZFY/@@download/ENCFF538ZFY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124AKH bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF958ONK 1168946231 ENCODE Processing Pipeline b355b063655ec498c3c72c84108aee79 https://www.encodeproject.org/files/ENCFF124AKH/@@download/ENCFF124AKH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF475VZM bigWig signal p-value ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF709KRI 490670980 ENCODE Processing Pipeline 0c636ef824d53713347035d29dfe48d2 https://www.encodeproject.org/files/ENCFF475VZM/@@download/ENCFF475VZM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF130UFC bigWig signal p-value ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF617NGF 441953731 ENCODE Processing Pipeline 22781791589a436e47f3ba48113cf96e https://www.encodeproject.org/files/ENCFF130UFC/@@download/ENCFF130UFC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF417WTO bigWig fold change over control ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF709KRI 441986446 ENCODE Processing Pipeline 4b2e19f3238c528b73dcafe6175e4f49 https://www.encodeproject.org/files/ENCFF417WTO/@@download/ENCFF417WTO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF938QCL bigWig signal p-value ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF617NGF, ENCFF709KRI 645053462 ENCODE Processing Pipeline 9ff3398839bb86e95273a829fc62808c https://www.encodeproject.org/files/ENCFF938QCL/@@download/ENCFF938QCL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF120JDI bigWig fold change over control ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF617NGF 420484396 ENCODE Processing Pipeline 58c4624655e06bc6d8e0b83ef0b230fd https://www.encodeproject.org/files/ENCFF120JDI/@@download/ENCFF120JDI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF033YFQ bigWig fold change over control ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF617NGF, ENCFF709KRI 718862709 ENCODE Processing Pipeline d165e68eb628c5b1082ff52ee2b36b83 https://www.encodeproject.org/files/ENCFF033YFQ/@@download/ENCFF033YFQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF055IDY bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF709KRI 6092504 ENCODE Processing Pipeline f81ba9f5fc316f3ca0a2e2c6d4d87e68 https://www.encodeproject.org/files/ENCFF055IDY/@@download/ENCFF055IDY.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF219NYJ bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF617NGF, ENCFF709KRI 6663345 ENCODE Processing Pipeline 2016e6b248c280645b4c856d45df620e https://www.encodeproject.org/files/ENCFF219NYJ/@@download/ENCFF219NYJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF050THU bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF617NGF 5612112 ENCODE Processing Pipeline 960d4bad737a6ef711727656800d5117 https://www.encodeproject.org/files/ENCFF050THU/@@download/ENCFF050THU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF513LBB bigBed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF055IDY 13021156 ENCODE Processing Pipeline b97232e7f8ace4e86bf504d9beea620d https://www.encodeproject.org/files/ENCFF513LBB/@@download/ENCFF513LBB.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF161ZHG bigBed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF050THU 13172868 ENCODE Processing Pipeline 89def0be7b582763f172811cd545af55 https://www.encodeproject.org/files/ENCFF161ZHG/@@download/ENCFF161ZHG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261QVO bigBed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF219NYJ 13078822 ENCODE Processing Pipeline d31553fb4f27ff16a798b66d92f2b0b7 https://www.encodeproject.org/files/ENCFF261QVO/@@download/ENCFF261QVO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF291BVN bed narrowPeak conservative idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF050THU, ENCFF055IDY, ENCFF219NYJ, ENCFF419RSJ 147689 ENCODE Processing Pipeline c6ed80acf524de1d6df8cd7a3a018f86 https://www.encodeproject.org/files/ENCFF291BVN/@@download/ENCFF291BVN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF704ZHJ bigBed narrowPeak conservative idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF291BVN 361217 ENCODE Processing Pipeline dbc8b33f9aeb6876f48f3740380186d7 https://www.encodeproject.org/files/ENCFF704ZHJ/@@download/ENCFF704ZHJ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF019LNU bigBed narrowPeak optimal idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF125UKX 373800 ENCODE Processing Pipeline 9780d0fdc68f7eb10a700de1819a72c4 https://www.encodeproject.org/files/ENCFF019LNU/@@download/ENCFF019LNU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF125UKX bed narrowPeak optimal idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF050THU, ENCFF055IDY, ENCFF219NYJ, ENCFF419RSJ 155361 ENCODE Processing Pipeline abd5a5861885054af766f7855daa85a7 https://www.encodeproject.org/files/ENCFF125UKX/@@download/ENCFF125UKX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF174RZG bigWig signal p-value ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF538ZFY 1139574984 ENCODE Processing Pipeline 484a205d63c06d4b8c9f6c8da2641b58 https://www.encodeproject.org/files/ENCFF174RZG/@@download/ENCFF174RZG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF179RWI bigWig signal p-value ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF124AKH, ENCFF203ABR 1116746779 ENCODE Processing Pipeline c778dc64004947b5df5e16f3ee1a6b2d https://www.encodeproject.org/files/ENCFF179RWI/@@download/ENCFF179RWI.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262MAQ bigWig signal p-value ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124AKH, ENCFF203ABR, ENCFF538ZFY 1414991901 ENCODE Processing Pipeline c3083415b54b57840e0b680a67a13ac1 https://www.encodeproject.org/files/ENCFF262MAQ/@@download/ENCFF262MAQ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF039QRC bigWig fold change over control ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF538ZFY 846883454 ENCODE Processing Pipeline 1949c6c58b1cc9aa4427cc5285ba35f4 https://www.encodeproject.org/files/ENCFF039QRC/@@download/ENCFF039QRC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF277UYF bigWig fold change over control ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF124AKH, ENCFF203ABR 802744323 ENCODE Processing Pipeline fbbd28672674572124757dcc0ccc289c https://www.encodeproject.org/files/ENCFF277UYF/@@download/ENCFF277UYF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF817JXD bigWig fold change over control ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124AKH, ENCFF203ABR, ENCFF538ZFY 1319849484 ENCODE Processing Pipeline e6f2d07884cbb50573e893f21b5a3f14 https://www.encodeproject.org/files/ENCFF817JXD/@@download/ENCFF817JXD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875AMX bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF538ZFY 6820955 ENCODE Processing Pipeline 904a33bcfe940d634185e76021b4f8d6 https://www.encodeproject.org/files/ENCFF875AMX/@@download/ENCFF875AMX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF663THQ bigBed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF875AMX 13046670 ENCODE Processing Pipeline d6636de407f197753334a9c2aed31828 https://www.encodeproject.org/files/ENCFF663THQ/@@download/ENCFF663THQ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF997CJC bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124AKH, ENCFF203ABR, ENCFF538ZFY 7086536 ENCODE Processing Pipeline 64f1027829d1592c9ffcf5cea94a1be9 https://www.encodeproject.org/files/ENCFF997CJC/@@download/ENCFF997CJC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304SPP bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF124AKH, ENCFF203ABR 6428572 ENCODE Processing Pipeline 1168510cdabab6a56ab45f3b1982502f https://www.encodeproject.org/files/ENCFF304SPP/@@download/ENCFF304SPP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF878SRV bigBed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF304SPP 13260452 ENCODE Processing Pipeline c69faea2e9fd0aa3dfea7388afab1937 https://www.encodeproject.org/files/ENCFF878SRV/@@download/ENCFF878SRV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF506UBO bed narrowPeak conservative idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF304SPP, ENCFF875AMX, ENCFF997CJC 127537 ENCODE Processing Pipeline bb6980eeeffde86425a464bbeb4e245f https://www.encodeproject.org/files/ENCFF506UBO/@@download/ENCFF506UBO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF943FWI bigBed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF997CJC 13008286 ENCODE Processing Pipeline 3a72d18718eb831b45a5f24e27de560a https://www.encodeproject.org/files/ENCFF943FWI/@@download/ENCFF943FWI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF073CIJ bigBed narrowPeak optimal idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF910GER 280542 ENCODE Processing Pipeline abf007a8e9ef446e076d7432c734f2d3 https://www.encodeproject.org/files/ENCFF073CIJ/@@download/ENCFF073CIJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF910GER bed narrowPeak optimal idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF304SPP, ENCFF875AMX, ENCFF997CJC 130841 ENCODE Processing Pipeline 9022ac929144e3b4ede8397e3c3495ba https://www.encodeproject.org/files/ENCFF910GER/@@download/ENCFF910GER.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF765WBW bigBed narrowPeak conservative idr thresholded peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF506UBO 275757 ENCODE Processing Pipeline 0284e8c1e042c1adfdd5fa6758c2ad39 https://www.encodeproject.org/files/ENCFF765WBW/@@download/ENCFF765WBW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF536WLP fastq reads ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2569661832 Richard Myers, HAIB 6e5d7653f05a53ee9a64d1f6ef690b63 SRA:SRR5338973 https://www.encodeproject.org/files/ENCFF536WLP/@@download/ENCFF536WLP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF117DNV fastq reads ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2912864344 Richard Myers, HAIB f74bfe3428cc1f6e56d13db9525b7bd8 SRA:SRR5338972 https://www.encodeproject.org/files/ENCFF117DNV/@@download/ENCFF117DNV.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF226HDF bam unfiltered alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 76 ENCFF117DNV, ENCFF643CGH 2998997741 ENCODE Processing Pipeline c5381738ead41c93f1e43a72e31193c1 https://www.encodeproject.org/files/ENCFF226HDF/@@download/ENCFF226HDF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF050LPC bam unfiltered alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 76 ENCFF536WLP, ENCFF643CGH 2688544447 ENCODE Processing Pipeline 6062ff3d08e3ecd6328025a54df8c52b https://www.encodeproject.org/files/ENCFF050LPC/@@download/ENCFF050LPC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF590IDN bam unfiltered alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 76 ENCFF536WLP, ENCFF807MUK 2681897933 ENCODE Processing Pipeline d312758ff5c604fe313d13b1b561a603 https://www.encodeproject.org/files/ENCFF590IDN/@@download/ENCFF590IDN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF494XMP bam unfiltered alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 76 ENCFF117DNV, ENCFF807MUK 2992425970 ENCODE Processing Pipeline eeef72eeb999f89e72829efe46b93f7d https://www.encodeproject.org/files/ENCFF494XMP/@@download/ENCFF494XMP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF379WXQ bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 76 ENCFF536WLP, ENCFF643CGH 1964365443 ENCODE Processing Pipeline 897379ece4377cc5c7f5ad5e41cde6d9 https://www.encodeproject.org/files/ENCFF379WXQ/@@download/ENCFF379WXQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961FJC bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 76 ENCFF536WLP, ENCFF807MUK 1962691199 ENCODE Processing Pipeline 0c73b8bf90361d4a8b5972afe5f138ab https://www.encodeproject.org/files/ENCFF961FJC/@@download/ENCFF961FJC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF049VHY bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 76 ENCFF117DNV, ENCFF643CGH 2238105928 ENCODE Processing Pipeline f302e429e508eb8d4fc8570f1801555c https://www.encodeproject.org/files/ENCFF049VHY/@@download/ENCFF049VHY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681XFM bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 76 ENCFF117DNV, ENCFF807MUK 2236473683 ENCODE Processing Pipeline 338bd6ec80b5f6c661fffa9f01d1660b https://www.encodeproject.org/files/ENCFF681XFM/@@download/ENCFF681XFM.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF314MAP bigWig signal p-value ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF379WXQ 672853483 ENCODE Processing Pipeline 7899e333225026831008d07b46c73d67 https://www.encodeproject.org/files/ENCFF314MAP/@@download/ENCFF314MAP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF497PSF bigWig signal p-value ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF049VHY 668365808 ENCODE Processing Pipeline a7cea387f4324aa505e375e6a45dad55 https://www.encodeproject.org/files/ENCFF497PSF/@@download/ENCFF497PSF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF255SFE bigWig fold change over control ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF049VHY 755679139 ENCODE Processing Pipeline a9a42e8dd88a95d92768af64fe98104f https://www.encodeproject.org/files/ENCFF255SFE/@@download/ENCFF255SFE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF716YUL bigWig signal p-value ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF049VHY, ENCFF379WXQ 661503061 ENCODE Processing Pipeline e3f90e827093baf447a0f962f45b50cd https://www.encodeproject.org/files/ENCFF716YUL/@@download/ENCFF716YUL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF939AIY bigWig fold change over control ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF379WXQ 678995492 ENCODE Processing Pipeline c065a7eb62699c3c27048f883da41968 https://www.encodeproject.org/files/ENCFF939AIY/@@download/ENCFF939AIY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF210DOS bigWig fold change over control ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF049VHY, ENCFF379WXQ 1178762587 ENCODE Processing Pipeline cdb6384a547652a2e025dec6b92e475c https://www.encodeproject.org/files/ENCFF210DOS/@@download/ENCFF210DOS.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF146NZZ bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF379WXQ 5698706 ENCODE Processing Pipeline 7d991746c7a1c3263b741876a1bf8b23 https://www.encodeproject.org/files/ENCFF146NZZ/@@download/ENCFF146NZZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF345ECO bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF049VHY 6340785 ENCODE Processing Pipeline 35b11ad160a117eca15ac3b6be9332e0 https://www.encodeproject.org/files/ENCFF345ECO/@@download/ENCFF345ECO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF663HMG bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF049VHY, ENCFF379WXQ 6837926 ENCODE Processing Pipeline b44c7b9111e41e5a2b95844aefff75f9 https://www.encodeproject.org/files/ENCFF663HMG/@@download/ENCFF663HMG.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531GMT bigBed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF146NZZ 13369254 ENCODE Processing Pipeline 5060d3e40d6ad4ffa36fc9b12d36f582 https://www.encodeproject.org/files/ENCFF531GMT/@@download/ENCFF531GMT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF993UJT bigBed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF345ECO 13283297 ENCODE Processing Pipeline 37b961bd1f6fa44f578f17d2ac60b71c https://www.encodeproject.org/files/ENCFF993UJT/@@download/ENCFF993UJT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF129VMF bigBed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF663HMG 13275892 ENCODE Processing Pipeline 7fabbbf8824c8d637d7ab3ca76bc64f2 https://www.encodeproject.org/files/ENCFF129VMF/@@download/ENCFF129VMF.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF872LJE bed narrowPeak conservative idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF146NZZ, ENCFF345ECO, ENCFF419RSJ, ENCFF663HMG 257698 ENCODE Processing Pipeline 2a173d2f36ec09d76676c7623a165841 https://www.encodeproject.org/files/ENCFF872LJE/@@download/ENCFF872LJE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124ITH bed narrowPeak optimal idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF146NZZ, ENCFF345ECO, ENCFF419RSJ, ENCFF663HMG 289049 ENCODE Processing Pipeline 0090e4ff24b7905586762c2cb8d38d73 https://www.encodeproject.org/files/ENCFF124ITH/@@download/ENCFF124ITH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF385KMZ bigBed narrowPeak conservative idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF872LJE 505328 ENCODE Processing Pipeline 405456e3d2feca1117ef0f92d6883d73 https://www.encodeproject.org/files/ENCFF385KMZ/@@download/ENCFF385KMZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF173CCH bigBed narrowPeak optimal idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF124ITH 548246 ENCODE Processing Pipeline 7cb418f56902d37a43439a67f30c6c50 https://www.encodeproject.org/files/ENCFF173CCH/@@download/ENCFF173CCH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF632UOK bigWig signal p-value ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF961FJC 1323840286 ENCODE Processing Pipeline 8886ac959fe316a69b5fa44862553f28 https://www.encodeproject.org/files/ENCFF632UOK/@@download/ENCFF632UOK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF301THV bigWig signal p-value ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF681XFM 1363684685 ENCODE Processing Pipeline b85f71394684bc9cce32de369cbac1b0 https://www.encodeproject.org/files/ENCFF301THV/@@download/ENCFF301THV.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF917QLX bigWig signal p-value ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF681XFM, ENCFF961FJC 1645229188 ENCODE Processing Pipeline b5d9e6a7e7132706735655609f824770 https://www.encodeproject.org/files/ENCFF917QLX/@@download/ENCFF917QLX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF540DSZ bigWig fold change over control ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF961FJC 1242462415 ENCODE Processing Pipeline 0c15400b64a2b560016a450cfc1d98ab https://www.encodeproject.org/files/ENCFF540DSZ/@@download/ENCFF540DSZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF906MHE bigWig fold change over control ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF681XFM 1316643599 ENCODE Processing Pipeline 5ab450ba7105791f0b7d8d5008c8bb3d https://www.encodeproject.org/files/ENCFF906MHE/@@download/ENCFF906MHE.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF471DGZ bigWig fold change over control ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF681XFM, ENCFF961FJC 1798973170 ENCODE Processing Pipeline c6087069a82f5eb8e065707065c9f4d5 https://www.encodeproject.org/files/ENCFF471DGZ/@@download/ENCFF471DGZ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF733RUB bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF681XFM 6837084 ENCODE Processing Pipeline 51693c057eaba4cd5fb3ec36ce764c31 https://www.encodeproject.org/files/ENCFF733RUB/@@download/ENCFF733RUB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF105ZTR bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF961FJC 6567691 ENCODE Processing Pipeline b3fb12b853cd7aa8bad6d9792f31818a https://www.encodeproject.org/files/ENCFF105ZTR/@@download/ENCFF105ZTR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF702ZNH bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF681XFM, ENCFF961FJC 7131497 ENCODE Processing Pipeline 13d4adfbcb58c92572f6953b86a4aef2 https://www.encodeproject.org/files/ENCFF702ZNH/@@download/ENCFF702ZNH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF190NHM bigBed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF733RUB 13303797 ENCODE Processing Pipeline e23747c5ee280cf1308b861485009689 https://www.encodeproject.org/files/ENCFF190NHM/@@download/ENCFF190NHM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF751BPR bigBed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF105ZTR 13508102 ENCODE Processing Pipeline ca261280107b20f89d2e71267d5c1580 https://www.encodeproject.org/files/ENCFF751BPR/@@download/ENCFF751BPR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469XFP bigBed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF702ZNH 13307012 ENCODE Processing Pipeline d717a8cd87bb845ad0a8fc9330815498 https://www.encodeproject.org/files/ENCFF469XFP/@@download/ENCFF469XFP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF599DLQ bed narrowPeak conservative idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF105ZTR, ENCFF702ZNH, ENCFF733RUB 246730 ENCODE Processing Pipeline 472c316de789c15970f2f9bf703eb20d https://www.encodeproject.org/files/ENCFF599DLQ/@@download/ENCFF599DLQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF229NZL bigBed narrowPeak conservative idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF599DLQ 492392 ENCODE Processing Pipeline 2203c568192e64aeb035a5ed67b2d61e https://www.encodeproject.org/files/ENCFF229NZL/@@download/ENCFF229NZL.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF030VPE bed narrowPeak optimal idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF105ZTR, ENCFF702ZNH, ENCFF733RUB 272057 ENCODE Processing Pipeline 0227a611f6b295a0e5b16e7fc03ad8ac https://www.encodeproject.org/files/ENCFF030VPE/@@download/ENCFF030VPE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF444MNK bigBed narrowPeak optimal idr thresholded peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF030VPE 526909 ENCODE Processing Pipeline cbd059bd25114c4f464f10416b50e917 https://www.encodeproject.org/files/ENCFF444MNK/@@download/ENCFF444MNK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF002EWN fastq reads ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 1 36 single-ended 769621150 Michael Snyder, Stanford 68de1a60c56d5680fd18c8758fedac04 SRA:SRR5111611 https://www.encodeproject.org/files/ENCFF002EWN/@@download/ENCFF002EWN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF002EWT fastq reads ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 1 36 single-ended 883737289 Michael Snyder, Stanford e46bd920512b46a726976a835a92d9a6 SRA:SRR5111610 https://www.encodeproject.org/files/ENCFF002EWT/@@download/ENCFF002EWT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF621LCK bam unfiltered alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 36 ENCFF002EWN, ENCFF643CGH 1102688774 ENCODE Processing Pipeline 92dbc41f912e2be344dafb08ddfbde2b https://www.encodeproject.org/files/ENCFF621LCK/@@download/ENCFF621LCK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF052THM bam unfiltered alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 36 ENCFF002EWT, ENCFF643CGH 1066703817 ENCODE Processing Pipeline 3455ef559d35a6261f5984b0071f617d https://www.encodeproject.org/files/ENCFF052THM/@@download/ENCFF052THM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF808EIJ bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 36 ENCFF002EWN, ENCFF643CGH 732508195 ENCODE Processing Pipeline dc27eb0f24db584a24896f6b46d1d41b https://www.encodeproject.org/files/ENCFF808EIJ/@@download/ENCFF808EIJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF040MDB bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 36 ENCFF002EWT, ENCFF643CGH 649598840 ENCODE Processing Pipeline d8f5d5dc5c04abc6ba65f1812e647159 https://www.encodeproject.org/files/ENCFF040MDB/@@download/ENCFF040MDB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF471YBA bam unfiltered alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 36 ENCFF002EWT, ENCFF807MUK 1060428412 ENCODE Processing Pipeline a8dd21d9f1430804781827dc87d47d23 https://www.encodeproject.org/files/ENCFF471YBA/@@download/ENCFF471YBA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF247DGL bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 36 ENCFF002EWN, ENCFF807MUK 732759358 ENCODE Processing Pipeline 9e2384986e29eeea839d4d9e1ab8e65d https://www.encodeproject.org/files/ENCFF247DGL/@@download/ENCFF247DGL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF288PDL bam unfiltered alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 36 ENCFF002EWN, ENCFF807MUK 1097712535 ENCODE Processing Pipeline 06503ba7910928ba7e7c75718be91e50 https://www.encodeproject.org/files/ENCFF288PDL/@@download/ENCFF288PDL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF588CRQ bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 36 ENCFF002EWT, ENCFF807MUK 649847687 ENCODE Processing Pipeline 78981bf98cd3ab319341ee8c2987f289 https://www.encodeproject.org/files/ENCFF588CRQ/@@download/ENCFF588CRQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF226UOS bigWig signal p-value ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF588CRQ, ENCFF650GFB 550190142 ENCODE Processing Pipeline ef7425f33dcb79ab458be3d61097f9df https://www.encodeproject.org/files/ENCFF226UOS/@@download/ENCFF226UOS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF910MED bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF247DGL, ENCFF588CRQ, ENCFF650GFB 4627351 ENCODE Processing Pipeline a3412ffc08cd4429cba1a3c2e849f75c https://www.encodeproject.org/files/ENCFF910MED/@@download/ENCFF910MED.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF558TYV bigWig signal p-value ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF247DGL, ENCFF650GFB 485239395 ENCODE Processing Pipeline feeb63f103285447a9a729bb5094927b https://www.encodeproject.org/files/ENCFF558TYV/@@download/ENCFF558TYV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF513XTP bigWig fold change over control ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF588CRQ, ENCFF650GFB 361614355 ENCODE Processing Pipeline 43294a758a2e65882310089d066b4a91 https://www.encodeproject.org/files/ENCFF513XTP/@@download/ENCFF513XTP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF914FSW bigWig fold change over control ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF247DGL, ENCFF588CRQ, ENCFF650GFB 629140459 ENCODE Processing Pipeline 4d869c34401edba48001231106697402 https://www.encodeproject.org/files/ENCFF914FSW/@@download/ENCFF914FSW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF230XXO bigWig signal p-value ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF247DGL, ENCFF588CRQ, ENCFF650GFB 623882517 ENCODE Processing Pipeline af6192c812466faced0d0ae37747c2f3 https://www.encodeproject.org/files/ENCFF230XXO/@@download/ENCFF230XXO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF503SZB bed narrowPeak optimal idr thresholded peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF001TDO, ENCFF253SCW, ENCFF360UWJ, ENCFF910MED 18928 ENCODE Processing Pipeline 2aea4dec6d18664385af8d5c9fd590ef https://www.encodeproject.org/files/ENCFF503SZB/@@download/ENCFF503SZB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF131OTU bigWig fold change over control ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF247DGL, ENCFF650GFB 378462165 ENCODE Processing Pipeline 4cf7c5aba3a2485a39f0e3c0a743b636 https://www.encodeproject.org/files/ENCFF131OTU/@@download/ENCFF131OTU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF253SCW bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF588CRQ, ENCFF650GFB 44847 ENCODE Processing Pipeline 843ee65dfa4f255e2a5ff48b9607f3b8 https://www.encodeproject.org/files/ENCFF253SCW/@@download/ENCFF253SCW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF360UWJ bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF247DGL, ENCFF650GFB 4047731 ENCODE Processing Pipeline 96eacb20dbef5e4fd760a03b46f5856e https://www.encodeproject.org/files/ENCFF360UWJ/@@download/ENCFF360UWJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF763CTA bigBed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF253SCW 153492 ENCODE Processing Pipeline 38b221d2a59e37c3820bd53b7facdb13 https://www.encodeproject.org/files/ENCFF763CTA/@@download/ENCFF763CTA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF156GXX bigBed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF360UWJ 10478443 ENCODE Processing Pipeline b97c39f71cfceff93957f565935114fe https://www.encodeproject.org/files/ENCFF156GXX/@@download/ENCFF156GXX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF556IWJ bigBed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF910MED 11125020 ENCODE Processing Pipeline e5e22cb828617e52ead16c1fc2df49c4 https://www.encodeproject.org/files/ENCFF556IWJ/@@download/ENCFF556IWJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF036ILD bigBed narrowPeak optimal idr thresholded peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF503SZB 75378 ENCODE Processing Pipeline 8eec2adb0f67bf48bca2538c8465234f https://www.encodeproject.org/files/ENCFF036ILD/@@download/ENCFF036ILD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF376GBW bigWig signal p-value ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF449CRS, ENCFF808EIJ 469265188 ENCODE Processing Pipeline 48530b7ed1e49ad0a1f67453f81d7b48 https://www.encodeproject.org/files/ENCFF376GBW/@@download/ENCFF376GBW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF915YAR bigWig signal p-value ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF040MDB, ENCFF449CRS, ENCFF808EIJ 625691014 ENCODE Processing Pipeline 7cc3f3a2fcb0619e991ad4f7a79a8e20 https://www.encodeproject.org/files/ENCFF915YAR/@@download/ENCFF915YAR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF457WWL bigWig signal p-value ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF040MDB, ENCFF449CRS 436684980 ENCODE Processing Pipeline 98c0b2fb05723b1d8cdad60a3630957e https://www.encodeproject.org/files/ENCFF457WWL/@@download/ENCFF457WWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF409SBV bigWig fold change over control ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF040MDB, ENCFF449CRS 353455748 ENCODE Processing Pipeline d365f0d8b4f8ef442f4f82cd9d1b1a90 https://www.encodeproject.org/files/ENCFF409SBV/@@download/ENCFF409SBV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF181PUO bigWig fold change over control ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF449CRS, ENCFF808EIJ 378054332 ENCODE Processing Pipeline 9dcb9719c36477b1da9448c4616bfc14 https://www.encodeproject.org/files/ENCFF181PUO/@@download/ENCFF181PUO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF994ZRQ bigWig fold change over control ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF040MDB, ENCFF449CRS, ENCFF808EIJ 630199471 ENCODE Processing Pipeline a18a99ee49dfd0b38d5f78342abbcfce https://www.encodeproject.org/files/ENCFF994ZRQ/@@download/ENCFF994ZRQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF655VON bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF449CRS, ENCFF808EIJ 3768956 ENCODE Processing Pipeline ce922cde8fdcf0fdce137a6649bfb015 https://www.encodeproject.org/files/ENCFF655VON/@@download/ENCFF655VON.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF788GYL bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF040MDB, ENCFF449CRS 3804681 ENCODE Processing Pipeline 3719469192a99f3e48fe33cff343a0f1 https://www.encodeproject.org/files/ENCFF788GYL/@@download/ENCFF788GYL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF886DXP bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF040MDB, ENCFF449CRS, ENCFF808EIJ 4388091 ENCODE Processing Pipeline e64c2c692b47faa2f3fa099df64a4bb5 https://www.encodeproject.org/files/ENCFF886DXP/@@download/ENCFF886DXP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF917TPE bed narrowPeak optimal idr thresholded peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF419RSJ, ENCFF655VON, ENCFF788GYL, ENCFF886DXP 41445 ENCODE Processing Pipeline 5b9df62dddbb899a48bf4e016eca561d https://www.encodeproject.org/files/ENCFF917TPE/@@download/ENCFF917TPE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF927FTB bigBed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF886DXP 10920034 ENCODE Processing Pipeline 3efc90b552a0bd1f3594c2247e6f8992 https://www.encodeproject.org/files/ENCFF927FTB/@@download/ENCFF927FTB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF911SSA bigBed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF788GYL 10129035 ENCODE Processing Pipeline 9bdd7f079b87ee64171629affd5b8d1f https://www.encodeproject.org/files/ENCFF911SSA/@@download/ENCFF911SSA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF755VDF bigBed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 ENCFF655VON 9898659 ENCODE Processing Pipeline 3481b0179959ee52b803a70dc0e6ae87 https://www.encodeproject.org/files/ENCFF755VDF/@@download/ENCFF755VDF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF391PIN bigBed narrowPeak optimal idr thresholded peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2, 3 ENCFF917TPE 127662 ENCODE Processing Pipeline 6ba6d23db1d903c6530476628b01d258 https://www.encodeproject.org/files/ENCFF391PIN/@@download/ENCFF391PIN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF237FXB fastq reads ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 1 50 single-ended 1297121094 Richard Myers, HAIB 488fd5bc635793847b18f91d57396a07 SRA:SRR5338626 https://www.encodeproject.org/files/ENCFF237FXB/@@download/ENCFF237FXB.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF214CAS fastq reads ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 1 50 single-ended 2122806489 Richard Myers, HAIB 97c872f5a5f5872bfe06155cd0920c91 SRA:SRR5338625 https://www.encodeproject.org/files/ENCFF214CAS/@@download/ENCFF214CAS.fastq.gz Illumina HiSeq 2000 /files/ENCFF929JYK/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF078KAC bigWig signal p-value ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF336QNE, ENCFF991UTU 708941408 ENCODE Processing Pipeline dd8bee3c00e8eb2a064c18c0bf3e2196 https://www.encodeproject.org/files/ENCFF078KAC/@@download/ENCFF078KAC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF727HJU bigWig signal p-value ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF645WBK, ENCFF807CUF 670194973 ENCODE Processing Pipeline 285b237db06aae4e5a98c90b60787241 https://www.encodeproject.org/files/ENCFF727HJU/@@download/ENCFF727HJU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF892IBT bigWig fold change over control ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF336QNE, ENCFF991UTU 588601058 ENCODE Processing Pipeline 08cc30e273f1615b487c99aed1e8c727 https://www.encodeproject.org/files/ENCFF892IBT/@@download/ENCFF892IBT.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF841NBW bigWig fold change over control ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF645WBK, ENCFF807CUF 596713123 ENCODE Processing Pipeline 2778d8ded0a90b9aa965588d0db8b9d9 https://www.encodeproject.org/files/ENCFF841NBW/@@download/ENCFF841NBW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF479MXG bam unfiltered alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 50 ENCFF214CAS, ENCFF643CGH 2144577178 ENCODE Processing Pipeline 2216ef5d0dea8db86f5b66f0aa2149bb https://www.encodeproject.org/files/ENCFF479MXG/@@download/ENCFF479MXG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF794KUE bam unfiltered alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 50 ENCFF237FXB, ENCFF643CGH 1427404509 ENCODE Processing Pipeline 0f2036749af37b9110d252ec95580ad4 https://www.encodeproject.org/files/ENCFF794KUE/@@download/ENCFF794KUE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF872UEY bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 50 ENCFF214CAS, ENCFF643CGH 1240977271 ENCODE Processing Pipeline c71bdb9fb79bf8a7bc097d77a7839d84 https://www.encodeproject.org/files/ENCFF872UEY/@@download/ENCFF872UEY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF965BTP bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 50 ENCFF237FXB, ENCFF643CGH 1018502603 ENCODE Processing Pipeline fda6cdc351a62472b555a992fd602428 https://www.encodeproject.org/files/ENCFF965BTP/@@download/ENCFF965BTP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF985NAR bigWig signal p-value ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF370PSF, ENCFF965BTP 587819222 ENCODE Processing Pipeline 8c2e1b7f000ee7ca4e6b3b617bf72911 https://www.encodeproject.org/files/ENCFF985NAR/@@download/ENCFF985NAR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF471WWP bigWig signal p-value ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF406XEH, ENCFF872UEY 663833762 ENCODE Processing Pipeline 2a723b6e2e05a3141d3defe335cf52d8 https://www.encodeproject.org/files/ENCFF471WWP/@@download/ENCFF471WWP.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF264JJF bigWig signal p-value ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF370PSF, ENCFF406XEH, ENCFF872UEY, ENCFF965BTP 1229159066 ENCODE Processing Pipeline 2a992fedba7ac4bcc91f618dbffd47b1 https://www.encodeproject.org/files/ENCFF264JJF/@@download/ENCFF264JJF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF621RVJ bigWig fold change over control ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF370PSF, ENCFF965BTP 596450289 ENCODE Processing Pipeline 0334529a667d08e9899769c897e9fbe1 https://www.encodeproject.org/files/ENCFF621RVJ/@@download/ENCFF621RVJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF076UYR bigWig fold change over control ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF406XEH, ENCFF872UEY 589460100 ENCODE Processing Pipeline 5fbd31af64986773b4c700cd20d724aa https://www.encodeproject.org/files/ENCFF076UYR/@@download/ENCFF076UYR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF882NIX bigWig fold change over control ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF370PSF, ENCFF406XEH, ENCFF872UEY, ENCFF965BTP 1285805377 ENCODE Processing Pipeline 5344bbabb0e46177f7d98274a0758b69 https://www.encodeproject.org/files/ENCFF882NIX/@@download/ENCFF882NIX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF845XIS bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF406XEH, ENCFF872UEY 5203121 ENCODE Processing Pipeline 0987865403b1f44e5987d22c3b7e3f71 https://www.encodeproject.org/files/ENCFF845XIS/@@download/ENCFF845XIS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF678OZN bigBed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF845XIS 11027982 ENCODE Processing Pipeline 0c7ade70aad6a2d9baf0940ce317fb05 https://www.encodeproject.org/files/ENCFF678OZN/@@download/ENCFF678OZN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF366SCN bigBed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF820IFR 13451664 ENCODE Processing Pipeline 9c9a26b6a5b6926b825e5cd2bd46629f https://www.encodeproject.org/files/ENCFF366SCN/@@download/ENCFF366SCN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF820IFR bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF370PSF, ENCFF965BTP 5628341 ENCODE Processing Pipeline 7c983cd9ad4c6bde47f856efaae0d300 https://www.encodeproject.org/files/ENCFF820IFR/@@download/ENCFF820IFR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF344XWK bed narrowPeak optimal idr thresholded peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF419RSJ, ENCFF661JYP, ENCFF820IFR, ENCFF845XIS 107086 ENCODE Processing Pipeline 7d1384bd7b353bb9d09a0a86ccff9453 https://www.encodeproject.org/files/ENCFF344XWK/@@download/ENCFF344XWK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF661JYP bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF370PSF, ENCFF406XEH, ENCFF872UEY, ENCFF965BTP 6792262 ENCODE Processing Pipeline f55f2f5a14ce8508d88583c6394bc1eb https://www.encodeproject.org/files/ENCFF661JYP/@@download/ENCFF661JYP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF615ADK bigBed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF661JYP 13291242 ENCODE Processing Pipeline cd94db8dca07eb6393ea91b72ed09f07 https://www.encodeproject.org/files/ENCFF615ADK/@@download/ENCFF615ADK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF668PRX bigBed narrowPeak optimal idr thresholded peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF344XWK 273384 ENCODE Processing Pipeline 0594f897d4a1d16c11197b1c4ddd5a13 https://www.encodeproject.org/files/ENCFF668PRX/@@download/ENCFF668PRX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF466WMY bam unfiltered alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 50 ENCFF237FXB, ENCFF807MUK 1419654230 ENCODE Processing Pipeline 9642619790e06bebff7bc5dcfba37000 https://www.encodeproject.org/files/ENCFF466WMY/@@download/ENCFF466WMY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF336QNE bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 50 ENCFF237FXB, ENCFF807MUK 1018402347 ENCODE Processing Pipeline e7e0381615b82c04b00ffb62726ca653 https://www.encodeproject.org/files/ENCFF336QNE/@@download/ENCFF336QNE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF645WBK bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 50 ENCFF214CAS, ENCFF807MUK 1240891913 ENCODE Processing Pipeline 68663c68d73eb09c4872e51c4bd89ae8 https://www.encodeproject.org/files/ENCFF645WBK/@@download/ENCFF645WBK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF953PGS bam unfiltered alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 50 ENCFF214CAS, ENCFF807MUK 2134411693 ENCODE Processing Pipeline 0fcaa22da773fa6d5ade5048c1162fcc https://www.encodeproject.org/files/ENCFF953PGS/@@download/ENCFF953PGS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF989EBM bigWig fold change over control ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF336QNE, ENCFF645WBK, ENCFF807CUF, ENCFF991UTU 1270632266 ENCODE Processing Pipeline 02c4b743e5ca55664cff95f75d839996 https://www.encodeproject.org/files/ENCFF989EBM/@@download/ENCFF989EBM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF030PHB bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF336QNE, ENCFF991UTU 5635996 ENCODE Processing Pipeline 1eb2c8b251cda7f036a4aa014221b88a https://www.encodeproject.org/files/ENCFF030PHB/@@download/ENCFF030PHB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF840WSA bigWig signal p-value ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF336QNE, ENCFF645WBK, ENCFF807CUF, ENCFF991UTU 1299959289 ENCODE Processing Pipeline 0407a5adb434d73a37b18f1663f9ef02 https://www.encodeproject.org/files/ENCFF840WSA/@@download/ENCFF840WSA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF314VOK bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF645WBK, ENCFF807CUF 5215902 ENCODE Processing Pipeline ee39665b68439cbcca6045dff206b554 https://www.encodeproject.org/files/ENCFF314VOK/@@download/ENCFF314VOK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF236XBR bed narrowPeak optimal idr thresholded peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF001TDO, ENCFF030PHB, ENCFF314VOK, ENCFF808RKL 106579 ENCODE Processing Pipeline 738397904efa4a1ce7b50f6bca1fb8ef https://www.encodeproject.org/files/ENCFF236XBR/@@download/ENCFF236XBR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF714YQU bigBed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF030PHB 13449131 ENCODE Processing Pipeline faa6887bc97721b99d7123e72a97c715 https://www.encodeproject.org/files/ENCFF714YQU/@@download/ENCFF714YQU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF698DMD bigBed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF808RKL 13285026 ENCODE Processing Pipeline c2f8b17262c49c3b89b1681e6a83d317 https://www.encodeproject.org/files/ENCFF698DMD/@@download/ENCFF698DMD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF950ZVM bigBed narrowPeak optimal idr thresholded peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF236XBR 270762 ENCODE Processing Pipeline f201099c8888750d1aedb023778a67de https://www.encodeproject.org/files/ENCFF950ZVM/@@download/ENCFF950ZVM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF664GCG bigBed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF314VOK 11020497 ENCODE Processing Pipeline 5a97dfcd0394a14b10afa348275c7849 https://www.encodeproject.org/files/ENCFF664GCG/@@download/ENCFF664GCG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF808RKL bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1, 2 ENCFF336QNE, ENCFF645WBK, ENCFF807CUF, ENCFF991UTU 6794365 ENCODE Processing Pipeline 8ffce67edd788d2eb1bae09de5e0f5ac https://www.encodeproject.org/files/ENCFF808RKL/@@download/ENCFF808RKL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF000QOZ bam alignments ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QPK 1126416927 Richard Myers, HAIB 417e70dd0963608a0b7cae2aca89c211 https://www.encodeproject.org/files/ENCFF000QOZ/@@download/ENCFF000QOZ.bam hg19 released biological replicates with identical biosample ENCFF000QPA bam alignments ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPP 1703545319 Richard Myers, HAIB 272a84888069c2dd2859c3a58e29a64c https://www.encodeproject.org/files/ENCFF000QPA/@@download/ENCFF000QPA.bam hg19 released biological replicates with identical biosample ENCFF000QPB bigBed broadPeak peaks ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNJ 163252 Richard Myers, HAIB 9d632721bd48f5b79d478966a886fd34 https://www.encodeproject.org/files/ENCFF000QPB/@@download/ENCFF000QPB.bigBed hg19 released biological replicates with identical biosample ENCFF000QPC bigBed broadPeak peaks ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNK 283370 Richard Myers, HAIB a17773cd59001d747a79e1f9bec49c0f https://www.encodeproject.org/files/ENCFF000QPC/@@download/ENCFF000QPC.bigBed hg19 released biological replicates with identical biosample ENCFF000QPD bigWig raw signal ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 229241193 Richard Myers, HAIB 21e2143db298f146c22d13fcee1fae04 https://www.encodeproject.org/files/ENCFF000QPD/@@download/ENCFF000QPD.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QPF bigWig raw signal ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 118890916 Richard Myers, HAIB 8b7f57ee3fb19e220c9c9d1772447ccd https://www.encodeproject.org/files/ENCFF000QPF/@@download/ENCFF000QPF.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QPK fastq reads ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1149953668 Richard Myers, HAIB ce1062eab6a0d745c667dbb45e3ac262 https://www.encodeproject.org/files/ENCFF000QPK/@@download/ENCFF000QPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF000QPP fastq reads ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1758760017 Richard Myers, HAIB 39678ac551e7e291352bb729a4159e45 https://www.encodeproject.org/files/ENCFF000QPP/@@download/ENCFF000QPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UNJ bed broadPeak peaks ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 76229 Richard Myers, HAIB 9a26eff42a6d437ad92e2620e2931443 https://www.encodeproject.org/files/ENCFF001UNJ/@@download/ENCFF001UNJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UNK bed broadPeak peaks ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 124192 Richard Myers, HAIB 8228fb1da826e43e87b932f0a3891beb https://www.encodeproject.org/files/ENCFF001UNK/@@download/ENCFF001UNK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000XYT bam alignments ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYV 532758487 Peggy Farnham, USC 175c2e7a5216d2d1fb98be81513a7fba https://www.encodeproject.org/files/ENCFF000XYT/@@download/ENCFF000XYT.bam hg19 released low read length biological replicates with identical biosample ENCFF000XYU bigBed narrowPeak peaks ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLD 682433 Peggy Farnham, USC 3e0c826d185179ab0abd2075252536a2 https://www.encodeproject.org/files/ENCFF000XYU/@@download/ENCFF000XYU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XYV fastq reads ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1038190517 Peggy Farnham, USC a28ddd763fd231d777729d4e1a0c569d https://www.encodeproject.org/files/ENCFF000XYV/@@download/ENCFF000XYV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000XTE/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XYX fastq reads ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 910111125 Peggy Farnham, USC b74a1c9b5d673f856fcd556cc48c90ef https://www.encodeproject.org/files/ENCFF000XYX/@@download/ENCFF000XYX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000XTE/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XYZ bigWig signal ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 346085143 Peggy Farnham, USC 25f83b14d8f3e06a3822edebd754a88b https://www.encodeproject.org/files/ENCFF000XYZ/@@download/ENCFF000XYZ.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000XZA bam alignments ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYX 424218296 Peggy Farnham, USC 5d52c20579c7604aff3c1758bd6dfd2c https://www.encodeproject.org/files/ENCFF000XZA/@@download/ENCFF000XZA.bam hg19 released low read length biological replicates with identical biosample ENCFF001VLD bed narrowPeak peaks ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 256423 Peggy Farnham, USC a8820427b58edb00f5616bb88b43db4f https://www.encodeproject.org/files/ENCFF001VLD/@@download/ENCFF001VLD.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CUX bed narrowPeak optimal idr thresholded peaks ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 66265 ENCODE Consortium Analysis Working Group 48217ad1de947d3aa04bab64adba7682 https://www.encodeproject.org/files/ENCFF002CUX/@@download/ENCFF002CUX.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF614AHH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUX 261681 ENCODE Consortium 924c60be0a6bc9c3892156315f96a90a https://www.encodeproject.org/files/ENCFF614AHH/@@download/ENCFF614AHH.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000PFU bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PGG 677613913 Richard Myers, HAIB 492bfe381752db645bacffb9206791dd https://www.encodeproject.org/files/ENCFF000PFU/@@download/ENCFF000PFU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000PFV bigBed broadPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UFI 303442 Richard Myers, HAIB 7b66255d6d004c43e5d74d16d92731ee https://www.encodeproject.org/files/ENCFF000PFV/@@download/ENCFF000PFV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000PFW bigBed broadPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UFJ 560963 Richard Myers, HAIB 0c993d4cdc5c8b9f265d8da7cad9d683 https://www.encodeproject.org/files/ENCFF000PFW/@@download/ENCFF000PFW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000PFX bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PGI 891616654 Richard Myers, HAIB 290a4aa688bf8d10e159bf9ed4a8e187 https://www.encodeproject.org/files/ENCFF000PFX/@@download/ENCFF000PFX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000PFZ bigWig raw signal ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 1 6098714 Richard Myers, HAIB 40c4310f88792ce5df383defb71ff216 https://www.encodeproject.org/files/ENCFF000PFZ/@@download/ENCFF000PFZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF000PGA bigWig raw signal ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 1 22073590 Richard Myers, HAIB 99bff1e6a6d3d8fd340a44ef6ca7d4db https://www.encodeproject.org/files/ENCFF000PGA/@@download/ENCFF000PGA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF000PGG fastq reads ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 631728218 Richard Myers, HAIB 2f9e7f8988345792a93889c0dd97b87f https://www.encodeproject.org/files/ENCFF000PGG/@@download/ENCFF000PGG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000PGI fastq reads ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 997118673 Richard Myers, HAIB 80ebd982793ad5d02852b9ab680a4dc6 https://www.encodeproject.org/files/ENCFF000PGI/@@download/ENCFF000PGI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001UFI bed broadPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 1 180311 Richard Myers, HAIB 0ff1176513b0976710aafd7e425cad70 https://www.encodeproject.org/files/ENCFF001UFI/@@download/ENCFF001UFI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF001UFJ bed broadPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 1 367742 Richard Myers, HAIB d2a9aa75a8bde42d2347c1fb06143473 https://www.encodeproject.org/files/ENCFF001UFJ/@@download/ENCFF001UFJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF002CKD bed narrowPeak optimal idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 351541 ENCODE Consortium Analysis Working Group e5c7bb9a3ee8ae83426bb3a49cfd9370 https://www.encodeproject.org/files/ENCFF002CKD/@@download/ENCFF002CKD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF974PGS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CKD 697076 ENCODE Consortium 9710272e7010e81dea4fa411a4a29f95 https://www.encodeproject.org/files/ENCFF974PGS/@@download/ENCFF974PGS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF090KCF bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PGG, ENCFF643CGH 485444606 ENCODE Processing Pipeline 14ceb896698acb080ae68657fb9ccf7d https://www.encodeproject.org/files/ENCFF090KCF/@@download/ENCFF090KCF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF906TKS bam unfiltered alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PGG, ENCFF643CGH 803084288 ENCODE Processing Pipeline 512cdc6b9a06fc7668c9858bb290009b https://www.encodeproject.org/files/ENCFF906TKS/@@download/ENCFF906TKS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF499BWX bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PGI, ENCFF643CGH 370360688 ENCODE Processing Pipeline 4ab2f03fdc22038436427caf2d233175 https://www.encodeproject.org/files/ENCFF499BWX/@@download/ENCFF499BWX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF404WAE bam unfiltered alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PGI, ENCFF643CGH 1104267234 ENCODE Processing Pipeline 9c98b26946f74e304e3685bbdfe337e5 https://www.encodeproject.org/files/ENCFF404WAE/@@download/ENCFF404WAE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF876HLQ bam unfiltered alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PGI, ENCFF807MUK 1101856384 ENCODE Processing Pipeline f8d0ab60e3782a29c119f48a6ca57bd3 https://www.encodeproject.org/files/ENCFF876HLQ/@@download/ENCFF876HLQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF659YOC bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PGI, ENCFF807MUK 370569309 ENCODE Processing Pipeline 3b27311eeefb188f5d11ff47973f0140 https://www.encodeproject.org/files/ENCFF659YOC/@@download/ENCFF659YOC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF275GCD bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PGG, ENCFF807MUK 485691004 ENCODE Processing Pipeline dabfb694f12ae1a1f7a7e232041ccca4 https://www.encodeproject.org/files/ENCFF275GCD/@@download/ENCFF275GCD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF549UFG bam unfiltered alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PGG, ENCFF807MUK 800699255 ENCODE Processing Pipeline a50874f827457597eb51a4dcafa6da44 https://www.encodeproject.org/files/ENCFF549UFG/@@download/ENCFF549UFG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF750GHL bigWig fold change over control ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF499BWX 201255714 ENCODE Processing Pipeline e1dfa50c59c019fcab3946d7005452a5 https://www.encodeproject.org/files/ENCFF750GHL/@@download/ENCFF750GHL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF679MVX bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF090KCF, ENCFF175NMQ, ENCFF499BWX 4806269 ENCODE Processing Pipeline 94fa61f1a48fec295492dda866c8bbde https://www.encodeproject.org/files/ENCFF679MVX/@@download/ENCFF679MVX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF362ZFR bigBed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF461ZHK 8131025 ENCODE Processing Pipeline 4af01217a366ed09d65e78c679a70e46 https://www.encodeproject.org/files/ENCFF362ZFR/@@download/ENCFF362ZFR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF821SPQ bigWig signal p-value ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF499BWX 418885197 ENCODE Processing Pipeline f1bc4e0125db93ee41670df865b1237b https://www.encodeproject.org/files/ENCFF821SPQ/@@download/ENCFF821SPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF461ZHK bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF499BWX 3920797 ENCODE Processing Pipeline 2c96fbb11de056d69474a0d70497af7d https://www.encodeproject.org/files/ENCFF461ZHK/@@download/ENCFF461ZHK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF170QIU bigWig signal p-value ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF090KCF, ENCFF175NMQ 389424394 ENCODE Processing Pipeline 0ff6acb3a13058a92f7036e52764e60f https://www.encodeproject.org/files/ENCFF170QIU/@@download/ENCFF170QIU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF557BWM bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF090KCF, ENCFF175NMQ 4239907 ENCODE Processing Pipeline 80c49495017eecab9e3ff612762267b4 https://www.encodeproject.org/files/ENCFF557BWM/@@download/ENCFF557BWM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF413QTU bigBed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF679MVX 10920861 ENCODE Processing Pipeline 95ccd01c96b2faaea3a9cd204972b0b8 https://www.encodeproject.org/files/ENCFF413QTU/@@download/ENCFF413QTU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF709SLI bigWig signal p-value ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF090KCF, ENCFF175NMQ, ENCFF499BWX 485318883 ENCODE Processing Pipeline 6a2b7a6e1a92ebd7792179516be3f982 https://www.encodeproject.org/files/ENCFF709SLI/@@download/ENCFF709SLI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF890ELX bigWig fold change over control ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF090KCF, ENCFF175NMQ 285678721 ENCODE Processing Pipeline 7ede8209dbc2c82771672b478bd71fd6 https://www.encodeproject.org/files/ENCFF890ELX/@@download/ENCFF890ELX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF003HJB bigWig fold change over control ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF090KCF, ENCFF175NMQ, ENCFF499BWX 427387543 ENCODE Processing Pipeline 722ea89fd945a1c539305779eda303b2 https://www.encodeproject.org/files/ENCFF003HJB/@@download/ENCFF003HJB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF711SIO bigBed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF557BWM 10263352 ENCODE Processing Pipeline e831b7dd52a8caf30f21d58beeb76a10 https://www.encodeproject.org/files/ENCFF711SIO/@@download/ENCFF711SIO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF017OFK bed narrowPeak conservative idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF461ZHK, ENCFF557BWM, ENCFF679MVX 265678 ENCODE Processing Pipeline a54712da8fb0d4f27a9146ad0ee7879c https://www.encodeproject.org/files/ENCFF017OFK/@@download/ENCFF017OFK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF598GAE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF017OFK 449340 ENCODE Processing Pipeline c125053878e83300f8daac0a40ad63a6 https://www.encodeproject.org/files/ENCFF598GAE/@@download/ENCFF598GAE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF862DXR bed narrowPeak optimal idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF461ZHK, ENCFF557BWM, ENCFF679MVX 315294 ENCODE Processing Pipeline 507d02f39142e0696c56fbf3ac367c9d https://www.encodeproject.org/files/ENCFF862DXR/@@download/ENCFF862DXR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF639LWO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF862DXR 511076 ENCODE Processing Pipeline 34c9355b2152f6ba50645f5cce0c6827 https://www.encodeproject.org/files/ENCFF639LWO/@@download/ENCFF639LWO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF597BQB bigWig signal p-value ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF275GCD, ENCFF382BNF 403827336 ENCODE Processing Pipeline 72efd31507c08d2b18f959317f0f6b2c https://www.encodeproject.org/files/ENCFF597BQB/@@download/ENCFF597BQB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF321NDM bigWig fold change over control ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF275GCD, ENCFF382BNF 283354390 ENCODE Processing Pipeline 10e0cb9838c309434eef80344d55a79a https://www.encodeproject.org/files/ENCFF321NDM/@@download/ENCFF321NDM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF070ALX bigWig signal p-value ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF659YOC 483172976 ENCODE Processing Pipeline ba97cb6fdf04ce753046b01e9c92d953 https://www.encodeproject.org/files/ENCFF070ALX/@@download/ENCFF070ALX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF264HJM bigWig signal p-value ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF275GCD, ENCFF382BNF, ENCFF659YOC 501039474 ENCODE Processing Pipeline 35eb3836fa436d8e36492e5a2e7bef15 https://www.encodeproject.org/files/ENCFF264HJM/@@download/ENCFF264HJM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF822MIO bigWig fold change over control ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF659YOC 202012658 ENCODE Processing Pipeline 48e89caf3dfc672a11ca411cff4b2e51 https://www.encodeproject.org/files/ENCFF822MIO/@@download/ENCFF822MIO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF793ZQV bigWig fold change over control ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF275GCD, ENCFF382BNF, ENCFF659YOC 424131103 ENCODE Processing Pipeline dfe92317052058316d80c8b209881a54 https://www.encodeproject.org/files/ENCFF793ZQV/@@download/ENCFF793ZQV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF721KHE bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF275GCD, ENCFF382BNF 4408936 ENCODE Processing Pipeline c2ba84a109452733974208070d5e112d https://www.encodeproject.org/files/ENCFF721KHE/@@download/ENCFF721KHE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF073ACH bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF659YOC 3922214 ENCODE Processing Pipeline 2b9a98a9a0cbf2ae45dce3d7570c0950 https://www.encodeproject.org/files/ENCFF073ACH/@@download/ENCFF073ACH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF774DWR bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF275GCD, ENCFF382BNF, ENCFF659YOC 4807459 ENCODE Processing Pipeline e69a3432253c597451125b66b80e3b77 https://www.encodeproject.org/files/ENCFF774DWR/@@download/ENCFF774DWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF271FDL bigBed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF774DWR 10924476 ENCODE Processing Pipeline 877c88bb13299ba2b0bf26167b7203ef https://www.encodeproject.org/files/ENCFF271FDL/@@download/ENCFF271FDL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF259ZMC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF855DWX 446170 ENCODE Processing Pipeline 21d61c856550e7756d2060236f0f6262 https://www.encodeproject.org/files/ENCFF259ZMC/@@download/ENCFF259ZMC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF464XRK bigBed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF721KHE 10487774 ENCODE Processing Pipeline d1837e8e53fdf1da3cdacc6944420f88 https://www.encodeproject.org/files/ENCFF464XRK/@@download/ENCFF464XRK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF247ZVI bigBed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF073ACH 8126263 ENCODE Processing Pipeline a3dc9e64042a0b8695ab06186d351fe6 https://www.encodeproject.org/files/ENCFF247ZVI/@@download/ENCFF247ZVI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF855DWX bed narrowPeak conservative idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF073ACH, ENCFF721KHE, ENCFF774DWR 263138 ENCODE Processing Pipeline ada5327e89a45a93f51fa5200eecc5ed https://www.encodeproject.org/files/ENCFF855DWX/@@download/ENCFF855DWX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF471HCD bed narrowPeak optimal idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF073ACH, ENCFF721KHE, ENCFF774DWR 315269 ENCODE Processing Pipeline 9811f9d239aa6af3db6a129dcb21b892 https://www.encodeproject.org/files/ENCFF471HCD/@@download/ENCFF471HCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF236ZUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF471HCD 510035 ENCODE Processing Pipeline 72d9f5a9258b63d87cbb477e7905a647 https://www.encodeproject.org/files/ENCFF236ZUZ/@@download/ENCFF236ZUZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000XZN bam alignments ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XZX 177017072 Peggy Farnham, USC dc0c8348f23be838f028c1f0bf4564a6 https://www.encodeproject.org/files/ENCFF000XZN/@@download/ENCFF000XZN.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZO bigBed narrowPeak peaks ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLG 100687 Peggy Farnham, USC 34e3408b75ae6aaab04fa295356dd021 https://www.encodeproject.org/files/ENCFF000XZO/@@download/ENCFF000XZO.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZP bam alignments ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XZW 473852311 Peggy Farnham, USC c15dd02fc153d832c4397caf7e4a70e3 https://www.encodeproject.org/files/ENCFF000XZP/@@download/ENCFF000XZP.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZQ bigWig signal ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 384293024 Peggy Farnham, USC 2e1037374c3148971451cc7e2378a020 https://www.encodeproject.org/files/ENCFF000XZQ/@@download/ENCFF000XZQ.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XZW fastq reads ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 752522973 Peggy Farnham, USC a634712b5de39bba2faa969612384063 https://www.encodeproject.org/files/ENCFF000XZW/@@download/ENCFF000XZW.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZX fastq reads ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 630033394 Peggy Farnham, USC 4fa1a0b80eb90bd9ad40370417a9ce26 https://www.encodeproject.org/files/ENCFF000XZX/@@download/ENCFF000XZX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VLG bed narrowPeak peaks ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 11407 Peggy Farnham, USC b4448df9d770ca085e592709c679bab0 https://www.encodeproject.org/files/ENCFF001VLG/@@download/ENCFF001VLG.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CVA bed narrowPeak optimal idr thresholded peaks ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 6190 ENCODE Consortium Analysis Working Group 6d6e5c16bf06e488b8933b0b01da6aee https://www.encodeproject.org/files/ENCFF002CVA/@@download/ENCFF002CVA.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF828NME bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVA 90567 ENCODE Consortium bd9ac700501ea2481bc87f02016b7f60 https://www.encodeproject.org/files/ENCFF828NME/@@download/ENCFF828NME.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000OHG bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OHX 857253736 Richard Myers, HAIB 9d06a8a18678d00b989c46c85d9adf4c https://www.encodeproject.org/files/ENCFF000OHG/@@download/ENCFF000OHG.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHI bigBed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZQ 360911 Richard Myers, HAIB 88aa8d04ba61ab96167a25000af1cf83 https://www.encodeproject.org/files/ENCFF000OHI/@@download/ENCFF000OHI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHJ bigBed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZR 328906 Richard Myers, HAIB 0c5fc5db7b507d905faee8c055704b75 https://www.encodeproject.org/files/ENCFF000OHJ/@@download/ENCFF000OHJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHK bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OHV 722791068 Richard Myers, HAIB 3f0ca6483a9925d4c13359ecdb505ad4 https://www.encodeproject.org/files/ENCFF000OHK/@@download/ENCFF000OHK.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OHL bigWig raw signal ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 12368001 Richard Myers, HAIB c6a69939a090bc7367080078bcad3bc8 https://www.encodeproject.org/files/ENCFF000OHL/@@download/ENCFF000OHL.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OHM bigWig raw signal ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 10422337 Richard Myers, HAIB 5940434134376e375279ef900e57a20f https://www.encodeproject.org/files/ENCFF000OHM/@@download/ENCFF000OHM.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OHV fastq reads ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 704105796 Richard Myers, HAIB 6b1b4cda0ca7cdc0aa0dd97ea68fbff9 https://www.encodeproject.org/files/ENCFF000OHV/@@download/ENCFF000OHV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF000OHX fastq reads ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 950797356 Richard Myers, HAIB 058d428bcac9e7124d94b50baa6bea08 https://www.encodeproject.org/files/ENCFF000OHX/@@download/ENCFF000OHX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF001TZQ bed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 1 170495 Richard Myers, HAIB caf28f513f044baf77fb13ce7985654f https://www.encodeproject.org/files/ENCFF001TZQ/@@download/ENCFF001TZQ.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TZR bed broadPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 1 148037 Richard Myers, HAIB 192ea16a9b3ac2b137f57e97666809c2 https://www.encodeproject.org/files/ENCFF001TZR/@@download/ENCFF001TZR.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CID bed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 45250 ENCODE Consortium Analysis Working Group aba4f859bb9144077368e422a7f84b12 https://www.encodeproject.org/files/ENCFF002CID/@@download/ENCFF002CID.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF923EPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CID 137556 ENCODE Consortium 1fb322ff76ff08a786fa228e42abe6ba https://www.encodeproject.org/files/ENCFF923EPQ/@@download/ENCFF923EPQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF166QSR bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF643CGH 929974444 ENCODE Processing Pipeline f88a37454bbf9c0331b6612a75624700 https://www.encodeproject.org/files/ENCFF166QSR/@@download/ENCFF166QSR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF432KDE bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF643CGH 587624345 ENCODE Processing Pipeline 83353cb14ef5ed7590bb03fdf694855d https://www.encodeproject.org/files/ENCFF432KDE/@@download/ENCFF432KDE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF772LSQ bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF643CGH 1211716453 ENCODE Processing Pipeline c19c4d1681c45069a19022ae1ecb48e6 https://www.encodeproject.org/files/ENCFF772LSQ/@@download/ENCFF772LSQ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF004PAV bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF643CGH 665357834 ENCODE Processing Pipeline 5bba72717136ba0787037aebd79baf51 https://www.encodeproject.org/files/ENCFF004PAV/@@download/ENCFF004PAV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF776FZQ bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF807MUK 1207851335 ENCODE Processing Pipeline 94a9e54cd2acb8bb272b318c42311e7e https://www.encodeproject.org/files/ENCFF776FZQ/@@download/ENCFF776FZQ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF963NKM bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF807MUK 661608896 ENCODE Processing Pipeline facc4d813825f77f913b714408132973 https://www.encodeproject.org/files/ENCFF963NKM/@@download/ENCFF963NKM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF643YAD bam unfiltered alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF807MUK 927286303 ENCODE Processing Pipeline caad1d5e4194a699b8a95d34150ddef6 https://www.encodeproject.org/files/ENCFF643YAD/@@download/ENCFF643YAD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF918QFL bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF807MUK 582838291 ENCODE Processing Pipeline 67bf4eb9e268e82fad1efb8a7faf1306 https://www.encodeproject.org/files/ENCFF918QFL/@@download/ENCFF918QFL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF998BZC bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF004PAV, ENCFF562HPN 419685046 ENCODE Processing Pipeline 4a8eb47b0b9fbb619af36ae9d0f80214 https://www.encodeproject.org/files/ENCFF998BZC/@@download/ENCFF998BZC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF723QNL bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF432KDE, ENCFF438FFV 462918110 ENCODE Processing Pipeline a6110a5b91d5584ed51ba8a52bc59142 https://www.encodeproject.org/files/ENCFF723QNL/@@download/ENCFF723QNL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF947VFN bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004PAV, ENCFF432KDE, ENCFF438FFV, ENCFF562HPN 829450172 ENCODE Processing Pipeline bd02f885d10bdf41c833603f0c9921ae https://www.encodeproject.org/files/ENCFF947VFN/@@download/ENCFF947VFN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF974VXQ bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF004PAV, ENCFF562HPN 301892186 ENCODE Processing Pipeline d0433ae3cb57a6eb32294597de73fb7f https://www.encodeproject.org/files/ENCFF974VXQ/@@download/ENCFF974VXQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF578SJM bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF004PAV, ENCFF562HPN 4263863 ENCODE Processing Pipeline bf911a62287e93421e8cc38e32f989dc https://www.encodeproject.org/files/ENCFF578SJM/@@download/ENCFF578SJM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF881WWO bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF432KDE, ENCFF438FFV 273343054 ENCODE Processing Pipeline 43b525b8b0724f996abbb0840a13cdf7 https://www.encodeproject.org/files/ENCFF881WWO/@@download/ENCFF881WWO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF806TFL bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004PAV, ENCFF432KDE, ENCFF438FFV, ENCFF562HPN 660584397 ENCODE Processing Pipeline 37654ffe4880b4a2d3cfed6317ff9b5c https://www.encodeproject.org/files/ENCFF806TFL/@@download/ENCFF806TFL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF226JMI bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004PAV, ENCFF432KDE, ENCFF438FFV, ENCFF562HPN 5412960 ENCODE Processing Pipeline 804833b3b0caacc2119a2724ca636ad1 https://www.encodeproject.org/files/ENCFF226JMI/@@download/ENCFF226JMI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF447FTH bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF467OPY 10427038 ENCODE Processing Pipeline 7571c725d9b137ea14adf58b48c987d0 https://www.encodeproject.org/files/ENCFF447FTH/@@download/ENCFF447FTH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF773OQL bed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226JMI, ENCFF419RSJ, ENCFF467OPY, ENCFF578SJM 49529 ENCODE Processing Pipeline 4d7c3c256c2860a663dfe7f237fd63f8 https://www.encodeproject.org/files/ENCFF773OQL/@@download/ENCFF773OQL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF205WFG bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226JMI 11444570 ENCODE Processing Pipeline bb8e699fca3e8f6e24e7dff6a15673e7 https://www.encodeproject.org/files/ENCFF205WFG/@@download/ENCFF205WFG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF526PMD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF362VQO 137892 ENCODE Processing Pipeline d57479660d9af335d6bc18d9949c3401 https://www.encodeproject.org/files/ENCFF526PMD/@@download/ENCFF526PMD.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF467OPY bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF432KDE, ENCFF438FFV 4165986 ENCODE Processing Pipeline 02c5dcb0d2aceafc8ccfeaa643243ea0 https://www.encodeproject.org/files/ENCFF467OPY/@@download/ENCFF467OPY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF259MRH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF773OQL 144722 ENCODE Processing Pipeline 4ddddd7cd060122e59ac0b0cfdd5dd8a https://www.encodeproject.org/files/ENCFF259MRH/@@download/ENCFF259MRH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF323YMP bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF578SJM 10677637 ENCODE Processing Pipeline 03a28ed7f742b4d689331b11192c7600 https://www.encodeproject.org/files/ENCFF323YMP/@@download/ENCFF323YMP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF362VQO bed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF226JMI, ENCFF419RSJ, ENCFF467OPY, ENCFF578SJM 45318 ENCODE Processing Pipeline b4fddbeb12701b92d2c3b7cc11a047ee https://www.encodeproject.org/files/ENCFF362VQO/@@download/ENCFF362VQO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF583RJI bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 400385668 ENCODE Processing Pipeline f3a07b3a92793f4f776fe100324e4def https://www.encodeproject.org/files/ENCFF583RJI/@@download/ENCFF583RJI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF897KAB bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 381048446 ENCODE Processing Pipeline c0f4cf45e262be7a4ab5b672e2973541 https://www.encodeproject.org/files/ENCFF897KAB/@@download/ENCFF897KAB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF952NQI bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 300660016 ENCODE Processing Pipeline 9aa45bf545de214ebcfe1e4a44aa8194 https://www.encodeproject.org/files/ENCFF952NQI/@@download/ENCFF952NQI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF266PKW bigWig signal p-value ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF837IOW, ENCFF918QFL, ENCFF958RTR, ENCFF963NKM 752669237 ENCODE Processing Pipeline de847224690a6ac9d89103e94dbbbe7f https://www.encodeproject.org/files/ENCFF266PKW/@@download/ENCFF266PKW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF004KXC bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 271725967 ENCODE Processing Pipeline f2875d877a676567c4db83f4492326f5 https://www.encodeproject.org/files/ENCFF004KXC/@@download/ENCFF004KXC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF759UFB bigWig fold change over control ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF837IOW, ENCFF918QFL, ENCFF958RTR, ENCFF963NKM 657563977 ENCODE Processing Pipeline 8b1b73c5aeea843f655d2b9691f40f99 https://www.encodeproject.org/files/ENCFF759UFB/@@download/ENCFF759UFB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF957BXT bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF141WKX 11453613 ENCODE Processing Pipeline a84e66319fedbc40f28ef55033835cac https://www.encodeproject.org/files/ENCFF957BXT/@@download/ENCFF957BXT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF394CWJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF141WKX, ENCFF372FLW, ENCFF891ZCM 44775 ENCODE Processing Pipeline 1e1ef221679ba28140cc4103b3ab4bb6 https://www.encodeproject.org/files/ENCFF394CWJ/@@download/ENCFF394CWJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF891ZCM bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 4235005 ENCODE Processing Pipeline f22938eb636e024178ae8d1a523c9bab https://www.encodeproject.org/files/ENCFF891ZCM/@@download/ENCFF891ZCM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF910DKV bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF891ZCM 10638220 ENCODE Processing Pipeline aeb280da298bbb1937b2b275719934fb https://www.encodeproject.org/files/ENCFF910DKV/@@download/ENCFF910DKV.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF452YIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF394CWJ 112782 ENCODE Processing Pipeline ad74dcf195eaaef8263f8e30a81fe597 https://www.encodeproject.org/files/ENCFF452YIQ/@@download/ENCFF452YIQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF681RVL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF648COV 107547 ENCODE Processing Pipeline c8cef345a266f231f20ecff676bb400a https://www.encodeproject.org/files/ENCFF681RVL/@@download/ENCFF681RVL.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF141WKX bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF837IOW, ENCFF918QFL, ENCFF958RTR, ENCFF963NKM 5377613 ENCODE Processing Pipeline deeaa07c0681b2f00069168f3d91fe27 https://www.encodeproject.org/files/ENCFF141WKX/@@download/ENCFF141WKX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF648COV bed narrowPeak conservative idr thresholded peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF141WKX, ENCFF372FLW, ENCFF891ZCM 40655 ENCODE Processing Pipeline 75b0cf33b49ff1b3fbc32d729881412b https://www.encodeproject.org/files/ENCFF648COV/@@download/ENCFF648COV.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF372FLW bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 4179024 ENCODE Processing Pipeline 4e94740b37fb8b99b7d324eb3fb75d00 https://www.encodeproject.org/files/ENCFF372FLW/@@download/ENCFF372FLW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF565YJZ bigBed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372FLW 10506117 ENCODE Processing Pipeline 712b798e92731196bdd2d630b3db1c8b https://www.encodeproject.org/files/ENCFF565YJZ/@@download/ENCFF565YJZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NNR bam alignments ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NOD 1949847924 Richard Myers, HAIB 31267373c06e3daf653014c1d8a85011 https://www.encodeproject.org/files/ENCFF000NNR/@@download/ENCFF000NNR.bam hg19 released biological replicates with identical biosample ENCFF000NNS bigBed broadPeak peaks ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVD 530125 Richard Myers, HAIB c9b58cba40ea5a9ce8ba553b97c79aaf https://www.encodeproject.org/files/ENCFF000NNS/@@download/ENCFF000NNS.bigBed hg19 released biological replicates with identical biosample ENCFF000NNT bigBed broadPeak peaks ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVE 1173933 Richard Myers, HAIB 32c80196c5ac16b1b8e3eddfa11120ea https://www.encodeproject.org/files/ENCFF000NNT/@@download/ENCFF000NNT.bigBed hg19 released biological replicates with identical biosample ENCFF000NNU bam alignments ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NOH 2209195528 Richard Myers, HAIB 39d0ed25e83ee02e90badcf5a148426f https://www.encodeproject.org/files/ENCFF000NNU/@@download/ENCFF000NNU.bam hg19 released biological replicates with identical biosample ENCFF000NNV bigWig raw signal ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 242752021 Richard Myers, HAIB 1c2327588eef8320236a9f041245d68f https://www.encodeproject.org/files/ENCFF000NNV/@@download/ENCFF000NNV.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NNW bigWig raw signal ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 267892383 Richard Myers, HAIB f067442174607582f6ab287e6b563dd9 https://www.encodeproject.org/files/ENCFF000NNW/@@download/ENCFF000NNW.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NOD fastq reads ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1960724441 Richard Myers, HAIB 69e17c77938dd4db08dfc2a77bb2a835 https://www.encodeproject.org/files/ENCFF000NOD/@@download/ENCFF000NOD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NOH fastq reads ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2289804504 Richard Myers, HAIB 77513a66e6b02812b35541ba68f1940e https://www.encodeproject.org/files/ENCFF000NOH/@@download/ENCFF000NOH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TVD bed broadPeak peaks ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 334193 Richard Myers, HAIB c29bd4f1f81482b2b189a84e00c7c5d4 https://www.encodeproject.org/files/ENCFF001TVD/@@download/ENCFF001TVD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TVE bed broadPeak peaks ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 1011425 Richard Myers, HAIB 59e12dc76ee9a1672c19e1e77756a1cf https://www.encodeproject.org/files/ENCFF001TVE/@@download/ENCFF001TVE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF482UZA fastq reads ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1440147606 Bradley Bernstein, Broad 4e0aa12f69606f272eda1abbb63ef308 SRA:SRR5832903 https://www.encodeproject.org/files/ENCFF482UZA/@@download/ENCFF482UZA.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released ENCFF587OYH fastq reads ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 4778136146 Bradley Bernstein, Broad 7d96f5f270f72474a10f67589ad73459 SRA:SRR5832902 https://www.encodeproject.org/files/ENCFF587OYH/@@download/ENCFF587OYH.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released ENCFF922GAV bam unfiltered alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF482UZA, ENCFF643CGH 1716161088 ENCODE Processing Pipeline bd4ae5663f8fad203b696deeb7fac9e2 https://www.encodeproject.org/files/ENCFF922GAV/@@download/ENCFF922GAV.bam GRCh38 released ENCFF777WTW bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF482UZA, ENCFF643CGH 1418310341 ENCODE Processing Pipeline f9753fef863e3af6907d637f1fe22d60 https://www.encodeproject.org/files/ENCFF777WTW/@@download/ENCFF777WTW.bam GRCh38 released ENCFF268TFG bam unfiltered alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF587OYH, ENCFF643CGH 5221227203 ENCODE Processing Pipeline a61d1c49a689d88b0bfb61299d51d423 https://www.encodeproject.org/files/ENCFF268TFG/@@download/ENCFF268TFG.bam GRCh38 released ENCFF878AOT bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF587OYH, ENCFF643CGH 4157302810 ENCODE Processing Pipeline 2ffb2b523290454fe6e8a1b3b4b945f4 https://www.encodeproject.org/files/ENCFF878AOT/@@download/ENCFF878AOT.bam GRCh38 released ENCFF745PQZ bam unfiltered alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF482UZA, ENCFF807MUK 1711337431 ENCODE Processing Pipeline 7740292ecf2518f5ff34ac612e444a10 https://www.encodeproject.org/files/ENCFF745PQZ/@@download/ENCFF745PQZ.bam hg19 released ENCFF277VQT bam unfiltered alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF587OYH, ENCFF807MUK 5208195541 ENCODE Processing Pipeline 5902f3eafddfd555efd22b177dcaf2be https://www.encodeproject.org/files/ENCFF277VQT/@@download/ENCFF277VQT.bam hg19 released ENCFF789JGE bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF482UZA, ENCFF807MUK 1417263718 ENCODE Processing Pipeline 5cf8e9879518d5f04d3a3961221fde34 https://www.encodeproject.org/files/ENCFF789JGE/@@download/ENCFF789JGE.bam hg19 released ENCFF273LFI bigWig signal p-value ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF878AOT 1591554204 ENCODE Processing Pipeline 08cf13a28bcbd98e89890967719c5ad8 https://www.encodeproject.org/files/ENCFF273LFI/@@download/ENCFF273LFI.bigWig GRCh38 released ENCFF277VBS bigWig signal p-value ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF714AMB, ENCFF777WTW, ENCFF878AOT 1948617898 ENCODE Processing Pipeline 969abb40c05b09aa0016e7eee3561893 https://www.encodeproject.org/files/ENCFF277VBS/@@download/ENCFF277VBS.bigWig GRCh38 released ENCFF541NSS bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF587OYH, ENCFF807MUK 4148255494 ENCODE Processing Pipeline 712e47b72b59aaba16a78c2f024db578 https://www.encodeproject.org/files/ENCFF541NSS/@@download/ENCFF541NSS.bam hg19 released ENCFF931GRG bigWig fold change over control ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF714AMB, ENCFF777WTW 1067603418 ENCODE Processing Pipeline 9e4d8c64193ce5347902b126b9e2ade6 https://www.encodeproject.org/files/ENCFF931GRG/@@download/ENCFF931GRG.bigWig GRCh38 released ENCFF849SKO bigWig signal p-value ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF714AMB, ENCFF777WTW 1227833486 ENCODE Processing Pipeline f236eca58c1a01534e14fbd50cb7da17 https://www.encodeproject.org/files/ENCFF849SKO/@@download/ENCFF849SKO.bigWig GRCh38 released ENCFF255YXH bigWig fold change over control ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF878AOT 1875059767 ENCODE Processing Pipeline c5feb3f7ec199e4c5c5b2342cef096bb https://www.encodeproject.org/files/ENCFF255YXH/@@download/ENCFF255YXH.bigWig GRCh38 released ENCFF290AKW bigWig fold change over control ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF714AMB, ENCFF777WTW, ENCFF878AOT 2063805220 ENCODE Processing Pipeline 7e60e5a7f6faa14f5bf1ee9311ee6c01 https://www.encodeproject.org/files/ENCFF290AKW/@@download/ENCFF290AKW.bigWig GRCh38 released ENCFF212XMH bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF714AMB, ENCFF777WTW 6508776 ENCODE Processing Pipeline a420a18db4262e10afe38893217b13c4 https://www.encodeproject.org/files/ENCFF212XMH/@@download/ENCFF212XMH.bed.gz GRCh38 released ENCFF107CAG bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF878AOT 7043824 ENCODE Processing Pipeline 01650e05a375da8e30a6eee79c2df97b https://www.encodeproject.org/files/ENCFF107CAG/@@download/ENCFF107CAG.bed.gz GRCh38 released ENCFF715ATR bigBed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF212XMH 13315908 ENCODE Processing Pipeline 45a83ed90a9ff43d69ae37108350226d https://www.encodeproject.org/files/ENCFF715ATR/@@download/ENCFF715ATR.bigBed GRCh38 released ENCFF695TQG bigBed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF107CAG 13223605 ENCODE Processing Pipeline 7e5a0bdf10154709619f4be1877e92f5 https://www.encodeproject.org/files/ENCFF695TQG/@@download/ENCFF695TQG.bigBed GRCh38 released ENCFF288DNT bed narrowPeak conservative idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF107CAG, ENCFF212XMH, ENCFF419RSJ, ENCFF688BBT 36811 ENCODE Processing Pipeline 33f9bbb0bace109b041f585bac8c1432 https://www.encodeproject.org/files/ENCFF288DNT/@@download/ENCFF288DNT.bed.gz GRCh38 released ENCFF330OCU bed narrowPeak optimal idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF107CAG, ENCFF212XMH, ENCFF419RSJ, ENCFF688BBT 54946 ENCODE Processing Pipeline 3aa0b53d3d8085d35d3cb05fd1e1b31c https://www.encodeproject.org/files/ENCFF330OCU/@@download/ENCFF330OCU.bed.gz GRCh38 released ENCFF688BBT bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF714AMB, ENCFF777WTW, ENCFF878AOT 7200484 ENCODE Processing Pipeline 116ba087a0968b7de09b90e773742abe https://www.encodeproject.org/files/ENCFF688BBT/@@download/ENCFF688BBT.bed.gz GRCh38 released ENCFF837TLM bigBed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF688BBT 13157943 ENCODE Processing Pipeline dc938130201e3ed119ed819b0d91fc1b https://www.encodeproject.org/files/ENCFF837TLM/@@download/ENCFF837TLM.bigBed GRCh38 released ENCFF167RLS bigBed narrowPeak conservative idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF288DNT 169920 ENCODE Processing Pipeline 3363cff60ba9618134389e8a3fbe9d42 https://www.encodeproject.org/files/ENCFF167RLS/@@download/ENCFF167RLS.bigBed GRCh38 released ENCFF774CNX bigBed narrowPeak optimal idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF330OCU 209300 ENCODE Processing Pipeline 0c4feea34b14f35ca6415504891db0ba https://www.encodeproject.org/files/ENCFF774CNX/@@download/ENCFF774CNX.bigBed GRCh38 released ENCFF570OSB bigWig signal p-value ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 1167141904 ENCODE Processing Pipeline 611885b5e437d3a0414847ba7f7d6b5f https://www.encodeproject.org/files/ENCFF570OSB/@@download/ENCFF570OSB.bigWig hg19 released ENCFF764VXZ bigWig fold change over control ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 1071947496 ENCODE Processing Pipeline 5d5fc45cee30fb7af9f1af615c11552a https://www.encodeproject.org/files/ENCFF764VXZ/@@download/ENCFF764VXZ.bigWig hg19 released ENCFF055VTK bigWig fold change over control ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF541NSS, ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 2090369963 ENCODE Processing Pipeline cbb5566e20dd8edfe47d3e2b75eedccc https://www.encodeproject.org/files/ENCFF055VTK/@@download/ENCFF055VTK.bigWig hg19 released ENCFF272YRR bigWig fold change over control ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF541NSS, ENCFF801GGG, ENCFF881DVS 1846266941 ENCODE Processing Pipeline e8546741516aff85bb7bc08ce8af6952 https://www.encodeproject.org/files/ENCFF272YRR/@@download/ENCFF272YRR.bigWig hg19 released ENCFF311XGK bigWig signal p-value ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF541NSS, ENCFF801GGG, ENCFF881DVS 1591945965 ENCODE Processing Pipeline 31d47918096ace944f48e86f0fd96615 https://www.encodeproject.org/files/ENCFF311XGK/@@download/ENCFF311XGK.bigWig hg19 released ENCFF978THO bigWig signal p-value ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF541NSS, ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 1980562711 ENCODE Processing Pipeline 4ff696fed6e66279d72069e5d0231769 https://www.encodeproject.org/files/ENCFF978THO/@@download/ENCFF978THO.bigWig hg19 released ENCFF220YKK bigBed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF676SDF 13282958 ENCODE Processing Pipeline c23a8598cac5b1033e90683900462205 https://www.encodeproject.org/files/ENCFF220YKK/@@download/ENCFF220YKK.bigBed hg19 released ENCFF015FOV bigBed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF818TBG 13207520 ENCODE Processing Pipeline 28464be7873b309c06ef372643bc5a8c https://www.encodeproject.org/files/ENCFF015FOV/@@download/ENCFF015FOV.bigBed hg19 released ENCFF676SDF bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 6460065 ENCODE Processing Pipeline 2c05468f58323fcf2b3cdd26a82d2850 https://www.encodeproject.org/files/ENCFF676SDF/@@download/ENCFF676SDF.bed.gz hg19 released ENCFF818TBG bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF541NSS, ENCFF801GGG, ENCFF881DVS 7042299 ENCODE Processing Pipeline 196699a54fa97e51711ef70a40b63464 https://www.encodeproject.org/files/ENCFF818TBG/@@download/ENCFF818TBG.bed.gz hg19 released ENCFF208WDH bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF541NSS, ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 7190308 ENCODE Processing Pipeline 75170a3d98adcbc9a7577e11017ea814 https://www.encodeproject.org/files/ENCFF208WDH/@@download/ENCFF208WDH.bed.gz hg19 released ENCFF968CEX bigBed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF208WDH 13142352 ENCODE Processing Pipeline a9390e8fbc2dbeb9134ae232ed6857d5 https://www.encodeproject.org/files/ENCFF968CEX/@@download/ENCFF968CEX.bigBed hg19 released ENCFF744DTQ bed narrowPeak optimal idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF208WDH, ENCFF676SDF, ENCFF818TBG 49458 ENCODE Processing Pipeline a496b8376f477648b4a6bac642491ab0 https://www.encodeproject.org/files/ENCFF744DTQ/@@download/ENCFF744DTQ.bed.gz hg19 released ENCFF464PDF bigBed narrowPeak conservative idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF616YRQ 147806 ENCODE Processing Pipeline 1122181c0fc8c9c9fe0ec272df97987c https://www.encodeproject.org/files/ENCFF464PDF/@@download/ENCFF464PDF.bigBed hg19 released ENCFF616YRQ bed narrowPeak conservative idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF208WDH, ENCFF676SDF, ENCFF818TBG 35592 ENCODE Processing Pipeline be629921f11e5f003cae3022d8c5447a https://www.encodeproject.org/files/ENCFF616YRQ/@@download/ENCFF616YRQ.bed.gz hg19 released ENCFF171KKR bigBed narrowPeak optimal idr thresholded peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF744DTQ 175507 ENCODE Processing Pipeline ef0c900e87d6554a4156cebb46f06a22 https://www.encodeproject.org/files/ENCFF171KKR/@@download/ENCFF171KKR.bigBed hg19 released ENCFF000QRO bam alignments ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QSI 1894076359 Richard Myers, HAIB 296bd1904da5ed960a0f156cdd3832aa https://www.encodeproject.org/files/ENCFF000QRO/@@download/ENCFF000QRO.bam hg19 released biological replicates with identical biosample ENCFF000QRP bam alignments ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QSB 1070199199 Richard Myers, HAIB a5a6d40a74d428016dc55ac7d610fe04 https://www.encodeproject.org/files/ENCFF000QRP/@@download/ENCFF000QRP.bam hg19 released biological replicates with identical biosample ENCFF000QRQ bigBed broadPeak peaks ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNX 142970 Richard Myers, HAIB 33252807f653cd08791cd4f0b874f009 https://www.encodeproject.org/files/ENCFF000QRQ/@@download/ENCFF000QRQ.bigBed hg19 released biological replicates with identical biosample ENCFF000QRR bigBed broadPeak peaks ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNY 154844 Richard Myers, HAIB f339659d623c96295c0ae6ea72a7366b https://www.encodeproject.org/files/ENCFF000QRR/@@download/ENCFF000QRR.bigBed hg19 released biological replicates with identical biosample ENCFF000QRT bigWig raw signal ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 242278631 Richard Myers, HAIB a73fb906f86837900c93548ccd419a3d https://www.encodeproject.org/files/ENCFF000QRT/@@download/ENCFF000QRT.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QRW bigWig raw signal ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 115032243 Richard Myers, HAIB bb050fccb09a3b3fabafaa59e6fe5378 https://www.encodeproject.org/files/ENCFF000QRW/@@download/ENCFF000QRW.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QSB fastq reads ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1089997734 Richard Myers, HAIB 389753476c03ba92178330ce866e0d1a https://www.encodeproject.org/files/ENCFF000QSB/@@download/ENCFF000QSB.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF000QSI fastq reads ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1933692203 Richard Myers, HAIB 4578adee97b9cdad9d1f0763c205f8f3 https://www.encodeproject.org/files/ENCFF000QSI/@@download/ENCFF000QSI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQG/ released biological replicates with identical biosample ENCFF001UNX bed broadPeak peaks ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 49923 Richard Myers, HAIB c0c46a166aaa6fe38727ccf8d2258822 https://www.encodeproject.org/files/ENCFF001UNX/@@download/ENCFF001UNX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNY bed broadPeak peaks ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 62604 Richard Myers, HAIB 957b86bf53d2bd2b3ff102a22f5b5ebb https://www.encodeproject.org/files/ENCFF001UNY/@@download/ENCFF001UNY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QQL bigBed broadPeak peaks ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNP 827720 Richard Myers, HAIB ba5650efaee4419bb6480084598e6489 https://www.encodeproject.org/files/ENCFF000QQL/@@download/ENCFF000QQL.bigBed hg19 released biological replicates with identical biosample ENCFF000QQM bigBed broadPeak peaks ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNQ 297444 Richard Myers, HAIB 562b92cca1af1d67c270f503a07badfb https://www.encodeproject.org/files/ENCFF000QQM/@@download/ENCFF000QQM.bigBed hg19 released biological replicates with identical biosample ENCFF000QQN bam alignments ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QQU 1356180605 Richard Myers, HAIB f96478a75a4ddb548eda2834718039bd https://www.encodeproject.org/files/ENCFF000QQN/@@download/ENCFF000QQN.bam hg19 released biological replicates with identical biosample ENCFF000QQO bam alignments ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QQX 2307264302 Richard Myers, HAIB b8d9a4a6e0f3f173d325a549faab9f20 https://www.encodeproject.org/files/ENCFF000QQO/@@download/ENCFF000QQO.bam hg19 released biological replicates with identical biosample ENCFF000QQP bigWig raw signal ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 244687466 Richard Myers, HAIB fadfbe032cac38fcdbf43cfbeb6cec47 https://www.encodeproject.org/files/ENCFF000QQP/@@download/ENCFF000QQP.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QQQ bigWig raw signal ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 156251433 Richard Myers, HAIB 0acdd97a7933a3199faf9f48b12f54bc https://www.encodeproject.org/files/ENCFF000QQQ/@@download/ENCFF000QQQ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QQU fastq reads ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1381308710 Richard Myers, HAIB 26568e9a8b09a9bbc4f41840e360d5db https://www.encodeproject.org/files/ENCFF000QQU/@@download/ENCFF000QQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF000QQX fastq reads ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2432262339 Richard Myers, HAIB 10e03f9b70d8bd6e46d4ce5028a262ba https://www.encodeproject.org/files/ENCFF000QQX/@@download/ENCFF000QQX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UNP bed broadPeak peaks ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 1 438966 Richard Myers, HAIB f3c63ff58b5b99eb6fd27bc3d81cd7b9 https://www.encodeproject.org/files/ENCFF001UNP/@@download/ENCFF001UNP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNQ bed broadPeak peaks ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 1 149250 Richard Myers, HAIB a4d15361a36c634c015f466b77b58414 https://www.encodeproject.org/files/ENCFF001UNQ/@@download/ENCFF001UNQ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QPG bam alignments ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPV 1983141893 Richard Myers, HAIB 8af832e5b3ce6783770f0c987660a2ca https://www.encodeproject.org/files/ENCFF000QPG/@@download/ENCFF000QPG.bam hg19 released biological replicates with identical biosample ENCFF000QPI bigBed broadPeak peaks ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNL 156790 Richard Myers, HAIB ddf57047f282276b90564bb902631e1d https://www.encodeproject.org/files/ENCFF000QPI/@@download/ENCFF000QPI.bigBed hg19 released biological replicates with identical biosample ENCFF000QPJ bigBed broadPeak peaks ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNM 426054 Richard Myers, HAIB 3a03d11ecef8f9f649ae280699993273 https://www.encodeproject.org/files/ENCFF000QPJ/@@download/ENCFF000QPJ.bigBed hg19 released biological replicates with identical biosample ENCFF000QPL bam alignments ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QPW 1668834195 Richard Myers, HAIB 6bc75b5a9251cc66b8e213ff09a89c21 https://www.encodeproject.org/files/ENCFF000QPL/@@download/ENCFF000QPL.bam hg19 released biological replicates with identical biosample ENCFF000QPM bigWig raw signal ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 1 1 231635885 Richard Myers, HAIB ede70c87d83e5d7b351c07ca0e5cec0e https://www.encodeproject.org/files/ENCFF000QPM/@@download/ENCFF000QPM.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QPN bigWig raw signal ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 2 1 155090052 Richard Myers, HAIB 8cb157ddc692dc00989df553e48aafa3 https://www.encodeproject.org/files/ENCFF000QPN/@@download/ENCFF000QPN.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QPV fastq reads ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2013510526 Richard Myers, HAIB 89bf5f34d6e5f02fc23f043a0032f548 https://www.encodeproject.org/files/ENCFF000QPV/@@download/ENCFF000QPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQG/ released biological replicates with identical biosample ENCFF000QPW fastq reads ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1731377331 Richard Myers, HAIB 0f2ff0f4ad4b632a0d0a61256b6915f2 https://www.encodeproject.org/files/ENCFF000QPW/@@download/ENCFF000QPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF001UNL bed broadPeak peaks ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 1 1 77438 Richard Myers, HAIB bdc34646b274d726ecffe9a92edc9354 https://www.encodeproject.org/files/ENCFF001UNL/@@download/ENCFF001UNL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UNM bed broadPeak peaks ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 2 1 259229 Richard Myers, HAIB 9df025d039429e5d356069782c56b4d6 https://www.encodeproject.org/files/ENCFF001UNM/@@download/ENCFF001UNM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF892BYO fastq reads ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 2242902964 Bradley Bernstein, Broad 481bfe31bbfb5f5fdccceebaf01bbdce SRA:SRR5833181 https://www.encodeproject.org/files/ENCFF892BYO/@@download/ENCFF892BYO.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF121HEJ fastq reads ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1046960179 Bradley Bernstein, Broad 8742b5df7f22a837ba11032fab581fa9 SRA:SRR5833180 https://www.encodeproject.org/files/ENCFF121HEJ/@@download/ENCFF121HEJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF792GBH bam unfiltered alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF643CGH, ENCFF892BYO 2611777754 ENCODE Processing Pipeline f7e406a8ef2af0201b10d8a4d387f461 https://www.encodeproject.org/files/ENCFF792GBH/@@download/ENCFF792GBH.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF535ZUV bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF121HEJ, ENCFF643CGH 879204161 ENCODE Processing Pipeline dd61232ec39775266446a284366c5069 https://www.encodeproject.org/files/ENCFF535ZUV/@@download/ENCFF535ZUV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF325MBD bam unfiltered alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF121HEJ, ENCFF643CGH 1201316536 ENCODE Processing Pipeline 08c8f06f0f7b98bdb6702bc8b877c34a https://www.encodeproject.org/files/ENCFF325MBD/@@download/ENCFF325MBD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF967QJQ bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF892BYO 2102948248 ENCODE Processing Pipeline db2c96b930e1e7a25625087be9c789a7 https://www.encodeproject.org/files/ENCFF967QJQ/@@download/ENCFF967QJQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF566OBP bam unfiltered alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF121HEJ, ENCFF807MUK 1198355950 ENCODE Processing Pipeline 16eee8cb825b32df3d614253a839c36e https://www.encodeproject.org/files/ENCFF566OBP/@@download/ENCFF566OBP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF151ISK bam unfiltered alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF807MUK, ENCFF892BYO 2604440064 ENCODE Processing Pipeline 9e7a74bba04500cf5b97fd5d43534924 https://www.encodeproject.org/files/ENCFF151ISK/@@download/ENCFF151ISK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF730KGN bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF121HEJ, ENCFF807MUK 878468497 ENCODE Processing Pipeline f182aafd81d12d5c2b66546fc8e764d6 https://www.encodeproject.org/files/ENCFF730KGN/@@download/ENCFF730KGN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF806BMO bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF807MUK, ENCFF892BYO 2100244523 ENCODE Processing Pipeline 3379626ce940354a7d44ef9a4bf6b1ea https://www.encodeproject.org/files/ENCFF806BMO/@@download/ENCFF806BMO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF184CPG bigWig signal p-value ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF535ZUV, ENCFF572IKT, ENCFF714AMB, ENCFF967QJQ 1531320868 ENCODE Processing Pipeline 94e6e65d43963a98d5a70e1a474a1508 https://www.encodeproject.org/files/ENCFF184CPG/@@download/ENCFF184CPG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF674JHM bigWig signal p-value ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF535ZUV, ENCFF572IKT, ENCFF714AMB 1086572334 ENCODE Processing Pipeline 33c765575b7d8c46085986c80b1566a4 https://www.encodeproject.org/files/ENCFF674JHM/@@download/ENCFF674JHM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF546JYM bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF535ZUV, ENCFF572IKT, ENCFF714AMB 5176326 ENCODE Processing Pipeline c318fe5109811c73eabb7020fda03f61 https://www.encodeproject.org/files/ENCFF546JYM/@@download/ENCFF546JYM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF008YUZ bigWig fold change over control ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF535ZUV, ENCFF572IKT, ENCFF714AMB 782395140 ENCODE Processing Pipeline 6c07c0476ab556fbc8bf2ae28a3757dc https://www.encodeproject.org/files/ENCFF008YUZ/@@download/ENCFF008YUZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF512WHK bigWig signal p-value ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF967QJQ 1284184127 ENCODE Processing Pipeline aae38cdb1622c6264e99301d3d954659 https://www.encodeproject.org/files/ENCFF512WHK/@@download/ENCFF512WHK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF205FNW bigWig fold change over control ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF967QJQ 1270362787 ENCODE Processing Pipeline ccd450041968858746eed6093620a28c https://www.encodeproject.org/files/ENCFF205FNW/@@download/ENCFF205FNW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF387NIL bigWig fold change over control ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF535ZUV, ENCFF572IKT, ENCFF714AMB, ENCFF967QJQ 1509913274 ENCODE Processing Pipeline 5f4cff800c04d25098960393c3cc4d24 https://www.encodeproject.org/files/ENCFF387NIL/@@download/ENCFF387NIL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF083QVK bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF535ZUV, ENCFF572IKT, ENCFF714AMB, ENCFF967QJQ 6796507 ENCODE Processing Pipeline 2ae4b4193ba3a3c666908c3c9aee6dad https://www.encodeproject.org/files/ENCFF083QVK/@@download/ENCFF083QVK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF133BFC bigBed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF173CDQ 13548879 ENCODE Processing Pipeline b365d453af573b877d90ddbcfc8d77db https://www.encodeproject.org/files/ENCFF133BFC/@@download/ENCFF133BFC.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF173CDQ bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF967QJQ 6492541 ENCODE Processing Pipeline fbae0991512195169ebf41cd5f862a01 https://www.encodeproject.org/files/ENCFF173CDQ/@@download/ENCFF173CDQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF936MTN bigBed narrowPeak optimal idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF199OOU 124224 ENCODE Processing Pipeline 03088e1108777cf6d98bfe0001d9dfa4 https://www.encodeproject.org/files/ENCFF936MTN/@@download/ENCFF936MTN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF646RIK bigBed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF546JYM 11344104 ENCODE Processing Pipeline f103a4240dbad05ed49fef6fbe9fc229 https://www.encodeproject.org/files/ENCFF646RIK/@@download/ENCFF646RIK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF335GCR bigBed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF083QVK 13542920 ENCODE Processing Pipeline f4fac0b1d5587d1f566d3d7ba6dd207d https://www.encodeproject.org/files/ENCFF335GCR/@@download/ENCFF335GCR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF901LLL bed narrowPeak conservative idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF083QVK, ENCFF173CDQ, ENCFF419RSJ, ENCFF546JYM 38335 ENCODE Processing Pipeline 5fee5b085996b36ba4f07258d6707de2 https://www.encodeproject.org/files/ENCFF901LLL/@@download/ENCFF901LLL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF199OOU bed narrowPeak optimal idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF083QVK, ENCFF173CDQ, ENCFF419RSJ, ENCFF546JYM 42358 ENCODE Processing Pipeline a6ffe2789e60ee0d0622a4396ff602b1 https://www.encodeproject.org/files/ENCFF199OOU/@@download/ENCFF199OOU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF004DJD bigBed narrowPeak conservative idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF901LLL 117469 ENCODE Processing Pipeline d90d5d5f55ca4de7cc29595c90428347 https://www.encodeproject.org/files/ENCFF004DJD/@@download/ENCFF004DJD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF690NRG bigWig signal p-value ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF730KGN, ENCFF801GGG, ENCFF881DVS 1063946929 ENCODE Processing Pipeline e15ff5df86fef7d2886b132a7abc120a https://www.encodeproject.org/files/ENCFF690NRG/@@download/ENCFF690NRG.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF345CKX bigWig fold change over control ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 1278905511 ENCODE Processing Pipeline a6113c4d8078ebc3f445ddb95e366616 https://www.encodeproject.org/files/ENCFF345CKX/@@download/ENCFF345CKX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF441BLC bigBed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF534VFU 13462239 ENCODE Processing Pipeline 0fae51d183c00028171173f67b0ecb4c https://www.encodeproject.org/files/ENCFF441BLC/@@download/ENCFF441BLC.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF301YHJ bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF730KGN, ENCFF801GGG, ENCFF881DVS 5301933 ENCODE Processing Pipeline f3022c2761c611152dc15335a5f428f7 https://www.encodeproject.org/files/ENCFF301YHJ/@@download/ENCFF301YHJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF054VAP bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 6617953 ENCODE Processing Pipeline 774498edce15d98f7fb120962d6f3ba1 https://www.encodeproject.org/files/ENCFF054VAP/@@download/ENCFF054VAP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF897NIN bed narrowPeak conservative idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF054VAP, ENCFF301YHJ, ENCFF534VFU 38622 ENCODE Processing Pipeline a6a38f19a321176b497cd81e06c52720 https://www.encodeproject.org/files/ENCFF897NIN/@@download/ENCFF897NIN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF144BWH bigWig fold change over control ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF730KGN, ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 1516278735 ENCODE Processing Pipeline 2b0e9f8cb64dae4d23a7849349972c5d https://www.encodeproject.org/files/ENCFF144BWH/@@download/ENCFF144BWH.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF523IQZ bigBed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF301YHJ 11313538 ENCODE Processing Pipeline d48c9ecadf63306aa2f6848a0ae64ab9 https://www.encodeproject.org/files/ENCFF523IQZ/@@download/ENCFF523IQZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF508UMW bigWig signal p-value ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF730KGN, ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 1320978950 ENCODE Processing Pipeline 893183d9dcd754512ad6283e84d76d22 https://www.encodeproject.org/files/ENCFF508UMW/@@download/ENCFF508UMW.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF563CJR bigBed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF054VAP 13500900 ENCODE Processing Pipeline 84d8d7379833a422b92a573b6e9995c1 https://www.encodeproject.org/files/ENCFF563CJR/@@download/ENCFF563CJR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF334UBJ bigWig signal p-value ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 1230960092 ENCODE Processing Pipeline dc7802ba9de1cf3e8c0bb3d179930de6 https://www.encodeproject.org/files/ENCFF334UBJ/@@download/ENCFF334UBJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF563ILU bigWig fold change over control ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF730KGN, ENCFF801GGG, ENCFF881DVS 786307727 ENCODE Processing Pipeline 56e94b95cd7ea950cc6757b0a3ae3eea https://www.encodeproject.org/files/ENCFF563ILU/@@download/ENCFF563ILU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF534VFU bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF730KGN, ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 6890340 ENCODE Processing Pipeline 0d8af5c4d0cddfabe8169a9f7e314f73 https://www.encodeproject.org/files/ENCFF534VFU/@@download/ENCFF534VFU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF039TQT bigBed narrowPeak conservative idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF897NIN 116291 ENCODE Processing Pipeline 5dde7917942ece8acacf2bdec3790d37 https://www.encodeproject.org/files/ENCFF039TQT/@@download/ENCFF039TQT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF071ZMT bed narrowPeak optimal idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF054VAP, ENCFF301YHJ, ENCFF534VFU 41060 ENCODE Processing Pipeline 4662c25eec38bb366dd86cc34ae8d2ee https://www.encodeproject.org/files/ENCFF071ZMT/@@download/ENCFF071ZMT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF822YRV bigBed narrowPeak optimal idr thresholded peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF071ZMT 120483 ENCODE Processing Pipeline 03cb0227143765b499b1c022dd28583b https://www.encodeproject.org/files/ENCFF822YRV/@@download/ENCFF822YRV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF564QJZ fastq reads ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 2030930914 Bradley Bernstein, Broad d73a5d73e49b25fd2fc7fb960585ce4a SRA:SRR5833161 https://www.encodeproject.org/files/ENCFF564QJZ/@@download/ENCFF564QJZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF883YYR fastq reads ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1386766313 Bradley Bernstein, Broad 6f41f73a592772192d11842375312580 SRA:SRR5833160 https://www.encodeproject.org/files/ENCFF883YYR/@@download/ENCFF883YYR.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF931PQA bam unfiltered alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF643CGH, ENCFF883YYR 1621742768 ENCODE Processing Pipeline 3d176b5e32455e43e16b1a74b98f0c76 https://www.encodeproject.org/files/ENCFF931PQA/@@download/ENCFF931PQA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF889YXR bam unfiltered alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF564QJZ, ENCFF643CGH 2396921925 ENCODE Processing Pipeline bcd876561dbbf60cec22f04077f3a109 https://www.encodeproject.org/files/ENCFF889YXR/@@download/ENCFF889YXR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF659WLX bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF883YYR 1268081125 ENCODE Processing Pipeline d72a276819e3572c505191621d0f498e https://www.encodeproject.org/files/ENCFF659WLX/@@download/ENCFF659WLX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF497DEZ bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF564QJZ, ENCFF643CGH 1995268656 ENCODE Processing Pipeline 269831ad8106e0dc0fc2e3bee1385fb6 https://www.encodeproject.org/files/ENCFF497DEZ/@@download/ENCFF497DEZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF593OBP bam unfiltered alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF807MUK, ENCFF883YYR 1617563226 ENCODE Processing Pipeline bd44865ccbb777d26e0dd076282339dd https://www.encodeproject.org/files/ENCFF593OBP/@@download/ENCFF593OBP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF362XTF bam unfiltered alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF564QJZ, ENCFF807MUK 2388817784 ENCODE Processing Pipeline fa24368b00db8eccc1c6e54f4f2e32ee https://www.encodeproject.org/files/ENCFF362XTF/@@download/ENCFF362XTF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF515NFA bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF807MUK, ENCFF883YYR 1266783533 ENCODE Processing Pipeline 250c47e42295b821aa8b174caac2bb4c https://www.encodeproject.org/files/ENCFF515NFA/@@download/ENCFF515NFA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF355VOF bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF564QJZ, ENCFF807MUK 1992650714 ENCODE Processing Pipeline 2c2f9cad174803e3d8099ebf4370bdc6 https://www.encodeproject.org/files/ENCFF355VOF/@@download/ENCFF355VOF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF528ZQH bigWig signal p-value ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF659WLX, ENCFF714AMB 1113061941 ENCODE Processing Pipeline 9bb57316f657967c9a8ccf016e9be047 https://www.encodeproject.org/files/ENCFF528ZQH/@@download/ENCFF528ZQH.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF674QOX bigWig fold change over control ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF497DEZ, ENCFF572IKT, ENCFF659WLX, ENCFF714AMB 1601212619 ENCODE Processing Pipeline fcc4180b66699825f52bd3399fb7f224 https://www.encodeproject.org/files/ENCFF674QOX/@@download/ENCFF674QOX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF172GSY bigWig fold change over control ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF659WLX, ENCFF714AMB 961525892 ENCODE Processing Pipeline a63c98d83620f1cd987ccf1faf03fe43 https://www.encodeproject.org/files/ENCFF172GSY/@@download/ENCFF172GSY.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF055GHO bigWig signal p-value ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF497DEZ, ENCFF572IKT, ENCFF714AMB 1263011014 ENCODE Processing Pipeline 94228a299e1d54eab791e9dbc998ff98 https://www.encodeproject.org/files/ENCFF055GHO/@@download/ENCFF055GHO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF447MMQ bigWig signal p-value ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF497DEZ, ENCFF572IKT, ENCFF659WLX, ENCFF714AMB 1248581060 ENCODE Processing Pipeline 1df393e421faab6f7739435075ef4758 https://www.encodeproject.org/files/ENCFF447MMQ/@@download/ENCFF447MMQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF469NHQ bigWig fold change over control ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF497DEZ, ENCFF572IKT, ENCFF714AMB 1341336894 ENCODE Processing Pipeline 0ba6f04038103d7ebfa47434dcc8c83e https://www.encodeproject.org/files/ENCFF469NHQ/@@download/ENCFF469NHQ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF138GYJ bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF659WLX, ENCFF714AMB 6206466 ENCODE Processing Pipeline 9cb1346ca9483f18efd8ae341c5fa01f https://www.encodeproject.org/files/ENCFF138GYJ/@@download/ENCFF138GYJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF194PWY bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF497DEZ, ENCFF572IKT, ENCFF714AMB 6672161 ENCODE Processing Pipeline 183e8fdb17294d8fa45b7700a5881d50 https://www.encodeproject.org/files/ENCFF194PWY/@@download/ENCFF194PWY.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF008SHH bigBed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF194PWY 13441937 ENCODE Processing Pipeline 4ffb41206bf95a7484828952dd19f4a1 https://www.encodeproject.org/files/ENCFF008SHH/@@download/ENCFF008SHH.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF175GML bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF497DEZ, ENCFF572IKT, ENCFF659WLX, ENCFF714AMB 7043158 ENCODE Processing Pipeline 7166ce828c46788ed35f1792142aaafd https://www.encodeproject.org/files/ENCFF175GML/@@download/ENCFF175GML.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF564KLF bigBed narrowPeak optimal idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF149INM 235468 ENCODE Processing Pipeline 45c82dda560936aa1db072b8aa54aaee https://www.encodeproject.org/files/ENCFF564KLF/@@download/ENCFF564KLF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF417POJ bigBed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF138GYJ 13555036 ENCODE Processing Pipeline 65bd18929c94fdc305d1b2231436d81f https://www.encodeproject.org/files/ENCFF417POJ/@@download/ENCFF417POJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF726XEJ bigBed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF175GML 13410285 ENCODE Processing Pipeline 6a8fe81e55a5a7a9addcbb73bf2ce160 https://www.encodeproject.org/files/ENCFF726XEJ/@@download/ENCFF726XEJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF825GFC bed narrowPeak conservative idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF138GYJ, ENCFF175GML, ENCFF194PWY, ENCFF419RSJ 85310 ENCODE Processing Pipeline e3d606e5a0c8a87456d6c49471fc1947 https://www.encodeproject.org/files/ENCFF825GFC/@@download/ENCFF825GFC.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF149INM bed narrowPeak optimal idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF138GYJ, ENCFF175GML, ENCFF194PWY, ENCFF419RSJ 91935 ENCODE Processing Pipeline a1f9e05893e36b8d2a6a8460b00988cd https://www.encodeproject.org/files/ENCFF149INM/@@download/ENCFF149INM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF005POO bigBed narrowPeak conservative idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF825GFC 222409 ENCODE Processing Pipeline b24938617fc4e67b7a3a1ffd289fd1a3 https://www.encodeproject.org/files/ENCFF005POO/@@download/ENCFF005POO.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF016XFN bigWig fold change over control ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF355VOF, ENCFF801GGG, ENCFF881DVS 1301367766 ENCODE Processing Pipeline 898ac6a4e0129cb8b1940f41a013593a https://www.encodeproject.org/files/ENCFF016XFN/@@download/ENCFF016XFN.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF473CLB bigWig signal p-value ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF355VOF, ENCFF801GGG, ENCFF881DVS 1119044089 ENCODE Processing Pipeline 591185a9de40285778c762493d2659b4 https://www.encodeproject.org/files/ENCFF473CLB/@@download/ENCFF473CLB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF808MLC bigWig signal p-value ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 1053409020 ENCODE Processing Pipeline 152cdefe1a0d5345bbfc74f155b187e9 https://www.encodeproject.org/files/ENCFF808MLC/@@download/ENCFF808MLC.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF679YYM bigWig signal p-value ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF355VOF, ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 1388023548 ENCODE Processing Pipeline 44dd4f9d635dd02915790299ea4f5464 https://www.encodeproject.org/files/ENCFF679YYM/@@download/ENCFF679YYM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF009EDG bigWig fold change over control ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 976731763 ENCODE Processing Pipeline 6bf2b213029005f2e128effce62ca837 https://www.encodeproject.org/files/ENCFF009EDG/@@download/ENCFF009EDG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF129CAN bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 6285149 ENCODE Processing Pipeline b05ff45241daab9061819ddfb0dc5a4f https://www.encodeproject.org/files/ENCFF129CAN/@@download/ENCFF129CAN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF881TQQ bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF355VOF, ENCFF801GGG, ENCFF881DVS 6709457 ENCODE Processing Pipeline 1d6cb2ba0770e5c7450addc03d449204 https://www.encodeproject.org/files/ENCFF881TQQ/@@download/ENCFF881TQQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF090BEP bigWig fold change over control ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF355VOF, ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 1614910314 ENCODE Processing Pipeline ecd022c8a4fede238de5c83c9838e36b https://www.encodeproject.org/files/ENCFF090BEP/@@download/ENCFF090BEP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF153JBF bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF355VOF, ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 7059143 ENCODE Processing Pipeline 2db6313d2cbbd8d7f5e35f2feecc50fc https://www.encodeproject.org/files/ENCFF153JBF/@@download/ENCFF153JBF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF158IPX bigBed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF881TQQ 13424326 ENCODE Processing Pipeline 0b74a7073864ff3bcad970f57081cd3e https://www.encodeproject.org/files/ENCFF158IPX/@@download/ENCFF158IPX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF832NZO bigBed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF129CAN 13547494 ENCODE Processing Pipeline 9ba74b826022578ba4b3f42c45ef7a4b https://www.encodeproject.org/files/ENCFF832NZO/@@download/ENCFF832NZO.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF177IRJ bed narrowPeak conservative idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF129CAN, ENCFF153JBF, ENCFF881TQQ 87020 ENCODE Processing Pipeline 00bbbea4f29ffe258ff8a6ee352a19f7 https://www.encodeproject.org/files/ENCFF177IRJ/@@download/ENCFF177IRJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF876RQU bigBed narrowPeak conservative idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF177IRJ 223427 ENCODE Processing Pipeline f71897209e8ce8d6ac21f25452857395 https://www.encodeproject.org/files/ENCFF876RQU/@@download/ENCFF876RQU.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF750DRV bigBed narrowPeak optimal idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF397TFF 237156 ENCODE Processing Pipeline 80813278b0ce950356e64837c825dd25 https://www.encodeproject.org/files/ENCFF750DRV/@@download/ENCFF750DRV.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF964WUZ bigBed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF153JBF 13379746 ENCODE Processing Pipeline 7499c4650edffc2ef99da1cbe37f1814 https://www.encodeproject.org/files/ENCFF964WUZ/@@download/ENCFF964WUZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF397TFF bed narrowPeak optimal idr thresholded peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF129CAN, ENCFF153JBF, ENCFF881TQQ 95040 ENCODE Processing Pipeline 2ea687c85dcf6ffef5fc2c0d8fb16c7d https://www.encodeproject.org/files/ENCFF397TFF/@@download/ENCFF397TFF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000NOY bigBed broadPeak peaks ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVL 1034916 Richard Myers, HAIB 953b454c97a1360c492ad6005f67c9ce https://www.encodeproject.org/files/ENCFF000NOY/@@download/ENCFF000NOY.bigBed hg19 released biological replicates with identical biosample ENCFF000NOZ bigBed broadPeak peaks ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVM 742057 Richard Myers, HAIB 24f2a0eff9942c853cc2dfc247fe7ab3 https://www.encodeproject.org/files/ENCFF000NOZ/@@download/ENCFF000NOZ.bigBed hg19 released biological replicates with identical biosample ENCFF000NPA bam alignments ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NPL 1771053127 Richard Myers, HAIB c45848e1a9708a67cc35c16c04ac3dea https://www.encodeproject.org/files/ENCFF000NPA/@@download/ENCFF000NPA.bam hg19 released biological replicates with identical biosample ENCFF000NPC bam alignments ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NPJ 1187802135 Richard Myers, HAIB 8663d923fbec45b87b0c76364af4d8e3 https://www.encodeproject.org/files/ENCFF000NPC/@@download/ENCFF000NPC.bam hg19 released biological replicates with identical biosample ENCFF000NPD bigWig raw signal ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 221158630 Richard Myers, HAIB 815ffa873f7e12f6e20035053fe4cae7 https://www.encodeproject.org/files/ENCFF000NPD/@@download/ENCFF000NPD.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NPE bigWig raw signal ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 133834764 Richard Myers, HAIB a64d35ca82e3fe6104b417bb4ef5a392 https://www.encodeproject.org/files/ENCFF000NPE/@@download/ENCFF000NPE.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NPJ fastq reads ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1201353749 Richard Myers, HAIB ec0e36ce73a3a0ce26963b6bc812b041 https://www.encodeproject.org/files/ENCFF000NPJ/@@download/ENCFF000NPJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF000NPL fastq reads ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1909199371 Richard Myers, HAIB c736e18b1ae7582b616ba096ee52ea0e https://www.encodeproject.org/files/ENCFF000NPL/@@download/ENCFF000NPL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVL bed broadPeak peaks ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 688158 Richard Myers, HAIB 2d0d2c1ce99834f32507a5dea5ff9482 https://www.encodeproject.org/files/ENCFF001TVL/@@download/ENCFF001TVL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVM bed broadPeak peaks ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 411487 Richard Myers, HAIB eea726bd93a54e61010c14b6fe8650eb https://www.encodeproject.org/files/ENCFF001TVM/@@download/ENCFF001TVM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF750SGF bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF807MUK 1759779077 ENCODE Processing Pipeline e3c844318b016df5a94cc5be6b7d0704 https://www.encodeproject.org/files/ENCFF750SGF/@@download/ENCFF750SGF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF312NBZ bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF807MUK 1473241713 ENCODE Processing Pipeline 487cd4c6e73be9aaed0fe2abcb62cf5b https://www.encodeproject.org/files/ENCFF312NBZ/@@download/ENCFF312NBZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF379ZPU fastq reads ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1690922156 Richard Myers, HAIB 3bd1e62df98375562adbcdf50ecce66c SRA:SRR5339519 https://www.encodeproject.org/files/ENCFF379ZPU/@@download/ENCFF379ZPU.fastq.gz Illumina HiSeq 2000 /files/ENCFF598SBH/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF002XBK fastq reads ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1379169647 Richard Myers, HAIB 79bd79cb4459b489a5a912701e282073 SRA:SRR5339520 https://www.encodeproject.org/files/ENCFF002XBK/@@download/ENCFF002XBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF180PND/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF415ELX bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF002XBK, ENCFF807MUK 1044519136 ENCODE Processing Pipeline 13e6683d64d2588547b5a1eb39ee29d3 https://www.encodeproject.org/files/ENCFF415ELX/@@download/ENCFF415ELX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF273TMW bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF379ZPU, ENCFF807MUK 1148336341 ENCODE Processing Pipeline e5f429085ec94ae3ee92992d61f14d79 https://www.encodeproject.org/files/ENCFF273TMW/@@download/ENCFF273TMW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF572EMD bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 686901085 ENCODE Processing Pipeline e076e3b0bf0b0ff5b4b99684bf7dba88 https://www.encodeproject.org/files/ENCFF572EMD/@@download/ENCFF572EMD.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF807BAZ bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 716568593 ENCODE Processing Pipeline f49ecb872d3a8d6b9da0e64e68e54274 https://www.encodeproject.org/files/ENCFF807BAZ/@@download/ENCFF807BAZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF435WMH bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF273TMW, ENCFF313NWV, ENCFF415ELX, ENCFF935ZWS 1291186435 ENCODE Processing Pipeline a83f49eb5de13ada4aba41624f060346 https://www.encodeproject.org/files/ENCFF435WMH/@@download/ENCFF435WMH.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF661UGV bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 598412374 ENCODE Processing Pipeline 533aaa9e343547610c3430bfa6ee2992 https://www.encodeproject.org/files/ENCFF661UGV/@@download/ENCFF661UGV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF903YLG bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 588780231 ENCODE Processing Pipeline 2850243a46a8b593eced3400add1b6ed https://www.encodeproject.org/files/ENCFF903YLG/@@download/ENCFF903YLG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF967YUJ bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF332JOV 13480172 ENCODE Processing Pipeline 79c1eae63b6903f735f5d6d8d63df578 https://www.encodeproject.org/files/ENCFF967YUJ/@@download/ENCFF967YUJ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF671XIQ bigBed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF784PEF 1175008 ENCODE Processing Pipeline 4474ba8b4203dd859f42e1f9b8db0680 https://www.encodeproject.org/files/ENCFF671XIQ/@@download/ENCFF671XIQ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF294GPL bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF273TMW, ENCFF313NWV, ENCFF415ELX, ENCFF935ZWS 7002346 ENCODE Processing Pipeline 57c3414a49c09072108ead425ced593a https://www.encodeproject.org/files/ENCFF294GPL/@@download/ENCFF294GPL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF332JOV bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 5852019 ENCODE Processing Pipeline 808c26e98d7e74b9fb8bd0df63eea746 https://www.encodeproject.org/files/ENCFF332JOV/@@download/ENCFF332JOV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF329YKA bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF236WSQ 13545874 ENCODE Processing Pipeline ea69c3ab961b672893a39aa6a0cf98e4 https://www.encodeproject.org/files/ENCFF329YKA/@@download/ENCFF329YKA.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF784PEF bed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF236WSQ, ENCFF294GPL, ENCFF332JOV 553142 ENCODE Processing Pipeline 3fede0783916eef96e713883690d0993 https://www.encodeproject.org/files/ENCFF784PEF/@@download/ENCFF784PEF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF313QLM bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF294GPL 13704133 ENCODE Processing Pipeline 00c5b76ff0fb8559ab1c1a07cf17f051 https://www.encodeproject.org/files/ENCFF313QLM/@@download/ENCFF313QLM.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF939TZS bed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF236WSQ, ENCFF294GPL, ENCFF332JOV 594939 ENCODE Processing Pipeline 9d4f96a2a04e052aa45a02e3702c33d5 https://www.encodeproject.org/files/ENCFF939TZS/@@download/ENCFF939TZS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF516MDP bigBed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF939TZS 1241908 ENCODE Processing Pipeline c5cbd883b9a734e9d33c646a37524702 https://www.encodeproject.org/files/ENCFF516MDP/@@download/ENCFF516MDP.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF278JRW bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF273TMW, ENCFF313NWV, ENCFF415ELX, ENCFF935ZWS 1315338945 ENCODE Processing Pipeline 98f381465547f867df11f8f74213aa71 https://www.encodeproject.org/files/ENCFF278JRW/@@download/ENCFF278JRW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF236WSQ bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 6119134 ENCODE Processing Pipeline e972082cf7848136ad3c323f39055b78 https://www.encodeproject.org/files/ENCFF236WSQ/@@download/ENCFF236WSQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF572AQI bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF643CGH 1765664463 ENCODE Processing Pipeline 744db70b2321e2a6161b6f3defd8ea1c https://www.encodeproject.org/files/ENCFF572AQI/@@download/ENCFF572AQI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF183GKO bam unfiltered alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF643CGH 1476671553 ENCODE Processing Pipeline c7a7ab776d57cd142326961979d73731 https://www.encodeproject.org/files/ENCFF183GKO/@@download/ENCFF183GKO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF465ZPQ bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF643CGH 1151670716 ENCODE Processing Pipeline b1ed6d3b88ae5bd9fc09e70c56fc1a6f https://www.encodeproject.org/files/ENCFF465ZPQ/@@download/ENCFF465ZPQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF009WRQ bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF643CGH 1050161016 ENCODE Processing Pipeline 98efca49ee786c5f38b4b45f4f9716aa https://www.encodeproject.org/files/ENCFF009WRQ/@@download/ENCFF009WRQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF956GRK bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF409OXD, ENCFF465ZPQ 748069996 ENCODE Processing Pipeline 1dd39bfdedba61fba4359f8513d3fa6f https://www.encodeproject.org/files/ENCFF956GRK/@@download/ENCFF956GRK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF875BIJ bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF009WRQ, ENCFF940GKZ 715737259 ENCODE Processing Pipeline 1c2b69e61f53dfdcf9d508ee8481d9b2 https://www.encodeproject.org/files/ENCFF875BIJ/@@download/ENCFF875BIJ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF843GAN bigWig signal p-value ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009WRQ, ENCFF409OXD, ENCFF465ZPQ, ENCFF940GKZ 1193664818 ENCODE Processing Pipeline e3a5f006f533b3f7d29362e8eed2199f https://www.encodeproject.org/files/ENCFF843GAN/@@download/ENCFF843GAN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF667CYC bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF409OXD, ENCFF465ZPQ 609421846 ENCODE Processing Pipeline a1581a46624eab27496fdb69c0bf5c7a https://www.encodeproject.org/files/ENCFF667CYC/@@download/ENCFF667CYC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF698JDC bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF009WRQ, ENCFF940GKZ 587572536 ENCODE Processing Pipeline a6ef54172f1e49843bf9969c73b1ee5c https://www.encodeproject.org/files/ENCFF698JDC/@@download/ENCFF698JDC.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF103OHX bigWig fold change over control ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009WRQ, ENCFF409OXD, ENCFF465ZPQ, ENCFF940GKZ 1346129858 ENCODE Processing Pipeline e518b760ece2dc56781c97948fd9d14f https://www.encodeproject.org/files/ENCFF103OHX/@@download/ENCFF103OHX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF115HCB bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF409OXD, ENCFF465ZPQ 5814715 ENCODE Processing Pipeline 7b7a0e2a554d7a6a0a2261d08595b38a https://www.encodeproject.org/files/ENCFF115HCB/@@download/ENCFF115HCB.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF585LFG bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF009WRQ, ENCFF940GKZ 5939451 ENCODE Processing Pipeline 1ec1151ca0bf5d10fc35d8ebcbab1c66 https://www.encodeproject.org/files/ENCFF585LFG/@@download/ENCFF585LFG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF646YJW bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF009WRQ, ENCFF409OXD, ENCFF465ZPQ, ENCFF940GKZ 6919654 ENCODE Processing Pipeline 5add5e3a7b2e26dff90242ad7e5fcb42 https://www.encodeproject.org/files/ENCFF646YJW/@@download/ENCFF646YJW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF850EJW bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF115HCB 13599075 ENCODE Processing Pipeline 0f1f6dd901fdfcddbbe926f5c0995412 https://www.encodeproject.org/files/ENCFF850EJW/@@download/ENCFF850EJW.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF113UYL bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF585LFG 13523381 ENCODE Processing Pipeline cbc09ffba8204ebde58def3bdc7dfe3e https://www.encodeproject.org/files/ENCFF113UYL/@@download/ENCFF113UYL.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF563ZIK bigBed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF935SBO 1190633 ENCODE Processing Pipeline 14a9676ceb8d816b0fcc262068ace45d https://www.encodeproject.org/files/ENCFF563ZIK/@@download/ENCFF563ZIK.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF008RIO bigBed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF646YJW 13724077 ENCODE Processing Pipeline 086f259266b0987ec2175cc3caffc149 https://www.encodeproject.org/files/ENCFF008RIO/@@download/ENCFF008RIO.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF935SBO bed narrowPeak conservative idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115HCB, ENCFF419RSJ, ENCFF585LFG, ENCFF646YJW 563905 ENCODE Processing Pipeline 9df854f466cd9ea7800dc670ef4bd312 https://www.encodeproject.org/files/ENCFF935SBO/@@download/ENCFF935SBO.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF478XNA bed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115HCB, ENCFF419RSJ, ENCFF585LFG, ENCFF646YJW 613896 ENCODE Processing Pipeline 37798933b9716f7e18da22a18a547aea https://www.encodeproject.org/files/ENCFF478XNA/@@download/ENCFF478XNA.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF141XLD bigBed narrowPeak optimal idr thresholded peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF478XNA 1269379 ENCODE Processing Pipeline 5800fe22a92b70e77416c652da408210 https://www.encodeproject.org/files/ENCFF141XLD/@@download/ENCFF141XLD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF428WLR bam unfiltered alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 50 ENCFF780YNX, ENCFF807MUK 1600688141 ENCODE Processing Pipeline c0b4b0aaf4299d3300b8e501f1bc45ff https://www.encodeproject.org/files/ENCFF428WLR/@@download/ENCFF428WLR.bam hg19 released antibody characterized with exemption ENCFF974JON bam unfiltered alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 50 ENCFF108ORY, ENCFF807MUK 1521286825 ENCODE Processing Pipeline 0aaa7f950c48de44a1786ee45b64ea49 https://www.encodeproject.org/files/ENCFF974JON/@@download/ENCFF974JON.bam hg19 released antibody characterized with exemption ENCFF780YNX fastq reads ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1450232534 Richard Myers, HAIB 4d7157cc6936e34ad742f06fffd434ce SRA:SRR5338891 https://www.encodeproject.org/files/ENCFF780YNX/@@download/ENCFF780YNX.fastq.gz Illumina HiSeq 2000 /files/ENCFF737ELZ/ released antibody characterized with exemption ENCFF108ORY fastq reads ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1415122449 Richard Myers, HAIB 0e58c561bbe82b1660a19d0303ffc27e SRA:SRR5338890 https://www.encodeproject.org/files/ENCFF108ORY/@@download/ENCFF108ORY.fastq.gz Illumina HiSeq 2000 /files/ENCFF272WBE/ released antibody characterized with exemption ENCFF552ZAM bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF780YNX, ENCFF807MUK 1204041905 ENCODE Processing Pipeline f4187135a13359593d445c4a8a434b1d https://www.encodeproject.org/files/ENCFF552ZAM/@@download/ENCFF552ZAM.bam hg19 released antibody characterized with exemption ENCFF574HZP bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF108ORY, ENCFF807MUK 1090911474 ENCODE Processing Pipeline 08f8be8a02132ba39d41dde577cc914a https://www.encodeproject.org/files/ENCFF574HZP/@@download/ENCFF574HZP.bam hg19 released antibody characterized with exemption ENCFF826RXZ bigWig signal p-value ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF574HZP, ENCFF969DYI 899907376 ENCODE Processing Pipeline b98796625c54350619f35c2ad8f8eb9d https://www.encodeproject.org/files/ENCFF826RXZ/@@download/ENCFF826RXZ.bigWig hg19 released antibody characterized with exemption ENCFF546QAZ bigWig signal p-value ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF552ZAM, ENCFF969DYI 757867657 ENCODE Processing Pipeline 9570f0039ed037e11995eece4bbf0c45 https://www.encodeproject.org/files/ENCFF546QAZ/@@download/ENCFF546QAZ.bigWig hg19 released antibody characterized with exemption ENCFF560CBM bigWig fold change over control ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF552ZAM, ENCFF969DYI 796141662 ENCODE Processing Pipeline d1305415f2cd3877e9c8f3c878eb1dd5 https://www.encodeproject.org/files/ENCFF560CBM/@@download/ENCFF560CBM.bigWig hg19 released antibody characterized with exemption ENCFF485BRF bigWig signal p-value ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF108FPL, ENCFF552ZAM, ENCFF574HZP, ENCFF969DYI 1065483337 ENCODE Processing Pipeline 0a6b890de1200c1d567e62e2bdbedf45 https://www.encodeproject.org/files/ENCFF485BRF/@@download/ENCFF485BRF.bigWig hg19 released antibody characterized with exemption ENCFF195NTH bigWig fold change over control ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF574HZP, ENCFF969DYI 682620825 ENCODE Processing Pipeline 951329a24f86b17b071a8425bd8b845a https://www.encodeproject.org/files/ENCFF195NTH/@@download/ENCFF195NTH.bigWig hg19 released antibody characterized with exemption ENCFF649MCA bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF552ZAM, ENCFF969DYI 6570142 ENCODE Processing Pipeline f9e2d5a849ef987451e1e89cff10606c https://www.encodeproject.org/files/ENCFF649MCA/@@download/ENCFF649MCA.bed.gz hg19 released antibody characterized with exemption ENCFF112KXB bigBed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF649MCA 13441857 ENCODE Processing Pipeline f6097d3ee22282ab92fc00407f7716ff https://www.encodeproject.org/files/ENCFF112KXB/@@download/ENCFF112KXB.bigBed hg19 released antibody characterized with exemption ENCFF487OSZ bed narrowPeak conservative idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF289JSG, ENCFF524UVY, ENCFF649MCA 503280 ENCODE Processing Pipeline b29d2f9d7f90bde09a8f380104f5fbf1 https://www.encodeproject.org/files/ENCFF487OSZ/@@download/ENCFF487OSZ.bed.gz hg19 released antibody characterized with exemption ENCFF311DTN bigBed narrowPeak conservative idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF487OSZ 1019151 ENCODE Processing Pipeline 8927cf39b2d9413b25b33bac7957905a https://www.encodeproject.org/files/ENCFF311DTN/@@download/ENCFF311DTN.bigBed hg19 released antibody characterized with exemption ENCFF347BWE bigBed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF289JSG 13456980 ENCODE Processing Pipeline dc84b8689868f727be7861b1e21cb8f0 https://www.encodeproject.org/files/ENCFF347BWE/@@download/ENCFF347BWE.bigBed hg19 released antibody characterized with exemption ENCFF531KWT bigBed narrowPeak optimal idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF311LEU 1066129 ENCODE Processing Pipeline 1331b0f0167063d44ef23d43fba755cd https://www.encodeproject.org/files/ENCFF531KWT/@@download/ENCFF531KWT.bigBed hg19 released antibody characterized with exemption ENCFF524UVY bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF574HZP, ENCFF969DYI 6249046 ENCODE Processing Pipeline be7e45a3892531cd835e47c75e9bd147 https://www.encodeproject.org/files/ENCFF524UVY/@@download/ENCFF524UVY.bed.gz hg19 released antibody characterized with exemption ENCFF311LEU bed narrowPeak optimal idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF289JSG, ENCFF524UVY, ENCFF649MCA 533877 ENCODE Processing Pipeline ecc965b347f5de0a0f97d0a66178b5ab https://www.encodeproject.org/files/ENCFF311LEU/@@download/ENCFF311LEU.bed.gz hg19 released antibody characterized with exemption ENCFF351HQV bigWig fold change over control ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF108FPL, ENCFF552ZAM, ENCFF574HZP, ENCFF969DYI 1121078735 ENCODE Processing Pipeline 5fbb618249bb32602fb15dcbbe0b0408 https://www.encodeproject.org/files/ENCFF351HQV/@@download/ENCFF351HQV.bigWig hg19 released antibody characterized with exemption ENCFF993VMY bigBed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF524UVY 13489970 ENCODE Processing Pipeline 7b2fe8863632966629d16c15d83da4b3 https://www.encodeproject.org/files/ENCFF993VMY/@@download/ENCFF993VMY.bigBed hg19 released antibody characterized with exemption ENCFF289JSG bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF108FPL, ENCFF552ZAM, ENCFF574HZP, ENCFF969DYI 6940022 ENCODE Processing Pipeline 456d3964254c6cf747de31cd376823af https://www.encodeproject.org/files/ENCFF289JSG/@@download/ENCFF289JSG.bed.gz hg19 released antibody characterized with exemption ENCFF696BZK bam unfiltered alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 50 ENCFF108ORY, ENCFF643CGH 1527697930 ENCODE Processing Pipeline 1af224f1c02278413db2fa03449a6f36 https://www.encodeproject.org/files/ENCFF696BZK/@@download/ENCFF696BZK.bam GRCh38 released antibody characterized with exemption ENCFF379PVS bam unfiltered alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF780YNX 1607987963 ENCODE Processing Pipeline 67ce41e88e59acb50389c1d8e6223fb3 https://www.encodeproject.org/files/ENCFF379PVS/@@download/ENCFF379PVS.bam GRCh38 released antibody characterized with exemption ENCFF273SBT bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 50 ENCFF108ORY, ENCFF643CGH 1090637105 ENCODE Processing Pipeline 1c8b6d10ef1a9e49eb50ce678c2da845 https://www.encodeproject.org/files/ENCFF273SBT/@@download/ENCFF273SBT.bam GRCh38 released antibody characterized with exemption ENCFF140CDB bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF780YNX 1203809176 ENCODE Processing Pipeline 386fa2f8e0c65c5a1e08c894f9a017dc https://www.encodeproject.org/files/ENCFF140CDB/@@download/ENCFF140CDB.bam GRCh38 released antibody characterized with exemption ENCFF244BGM bigWig signal p-value ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF273SBT, ENCFF372RRO, ENCFF626VZO 954760660 ENCODE Processing Pipeline 41787d0f3737df365bed9bd2605de09b https://www.encodeproject.org/files/ENCFF244BGM/@@download/ENCFF244BGM.bigWig GRCh38 released antibody characterized with exemption ENCFF225IZW bigWig signal p-value ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF140CDB, ENCFF372RRO, ENCFF626VZO 851965769 ENCODE Processing Pipeline 569cc70cc514de90fce7ad1d9946b04d https://www.encodeproject.org/files/ENCFF225IZW/@@download/ENCFF225IZW.bigWig GRCh38 released antibody characterized with exemption ENCFF583EQS bigWig signal p-value ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF140CDB, ENCFF273SBT, ENCFF372RRO, ENCFF626VZO 989531239 ENCODE Processing Pipeline c564e21a48093d18cb6d720673c29e81 https://www.encodeproject.org/files/ENCFF583EQS/@@download/ENCFF583EQS.bigWig GRCh38 released antibody characterized with exemption ENCFF424DBR bigWig fold change over control ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF273SBT, ENCFF372RRO, ENCFF626VZO 705438079 ENCODE Processing Pipeline ce1db3185eb46887a608a8fb674e4ec0 https://www.encodeproject.org/files/ENCFF424DBR/@@download/ENCFF424DBR.bigWig GRCh38 released antibody characterized with exemption ENCFF666IWB bigWig fold change over control ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF140CDB, ENCFF372RRO, ENCFF626VZO 794334800 ENCODE Processing Pipeline 4945eb5e874de08bf764d159a64fab6a https://www.encodeproject.org/files/ENCFF666IWB/@@download/ENCFF666IWB.bigWig GRCh38 released antibody characterized with exemption ENCFF441AMP bigWig fold change over control ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF140CDB, ENCFF273SBT, ENCFF372RRO, ENCFF626VZO 1113418993 ENCODE Processing Pipeline 0bf3ee0151780aed1754f1d57af8ba90 https://www.encodeproject.org/files/ENCFF441AMP/@@download/ENCFF441AMP.bigWig GRCh38 released antibody characterized with exemption ENCFF945VBM bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF140CDB, ENCFF372RRO, ENCFF626VZO 6350989 ENCODE Processing Pipeline be02082d60481e3d5e77d47518e3afc6 https://www.encodeproject.org/files/ENCFF945VBM/@@download/ENCFF945VBM.bed.gz GRCh38 released antibody characterized with exemption ENCFF724NLJ bigBed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF945VBM 13387272 ENCODE Processing Pipeline e2872897859ec441fcce9fe1b7620f4a https://www.encodeproject.org/files/ENCFF724NLJ/@@download/ENCFF724NLJ.bigBed GRCh38 released antibody characterized with exemption ENCFF360YCA bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF273SBT, ENCFF372RRO, ENCFF626VZO 6070815 ENCODE Processing Pipeline 46bca4c0db17faa89878bddbd18a8c9b https://www.encodeproject.org/files/ENCFF360YCA/@@download/ENCFF360YCA.bed.gz GRCh38 released antibody characterized with exemption ENCFF809IIX bigBed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF360YCA 13492817 ENCODE Processing Pipeline 260b3eaf66f3e54fc314478e4e2ffbb9 https://www.encodeproject.org/files/ENCFF809IIX/@@download/ENCFF809IIX.bigBed GRCh38 released antibody characterized with exemption ENCFF486CGH bigBed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF520HDU 13502272 ENCODE Processing Pipeline 3d1418bd8c13652956760b650c36a1e4 https://www.encodeproject.org/files/ENCFF486CGH/@@download/ENCFF486CGH.bigBed GRCh38 released antibody characterized with exemption ENCFF520HDU bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF140CDB, ENCFF273SBT, ENCFF372RRO, ENCFF626VZO 6862751 ENCODE Processing Pipeline 5c15a489a47d4f79075633d8aac3a6ea https://www.encodeproject.org/files/ENCFF520HDU/@@download/ENCFF520HDU.bed.gz GRCh38 released antibody characterized with exemption ENCFF441LKT bed narrowPeak conservative idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF360YCA, ENCFF419RSJ, ENCFF520HDU, ENCFF945VBM 514220 ENCODE Processing Pipeline 904b586b4eed9cac31383da5a7c4cf59 https://www.encodeproject.org/files/ENCFF441LKT/@@download/ENCFF441LKT.bed.gz GRCh38 released antibody characterized with exemption ENCFF969EOM bigBed narrowPeak conservative idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF441LKT 1035677 ENCODE Processing Pipeline 18a973ac458842d233c1a556466a5789 https://www.encodeproject.org/files/ENCFF969EOM/@@download/ENCFF969EOM.bigBed GRCh38 released antibody characterized with exemption ENCFF350CKI bed narrowPeak optimal idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF360YCA, ENCFF419RSJ, ENCFF520HDU, ENCFF945VBM 553706 ENCODE Processing Pipeline b313a15edc85a9fbd3b6b6ae11e4db1f https://www.encodeproject.org/files/ENCFF350CKI/@@download/ENCFF350CKI.bed.gz GRCh38 released antibody characterized with exemption ENCFF356OQP bigBed narrowPeak optimal idr thresholded peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF350CKI 1097527 ENCODE Processing Pipeline 08b727b2642da5969ca9c447694b6398 https://www.encodeproject.org/files/ENCFF356OQP/@@download/ENCFF356OQP.bigBed GRCh38 released antibody characterized with exemption ENCFF204LGU fastq reads ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF895OQI 3413608025 Michael Snyder, Stanford e9675ac6922a01b0d925b79a3b74b4d7 SRA:SRR5112383 https://www.encodeproject.org/files/ENCFF204LGU/@@download/ENCFF204LGU.fastq.gz Illumina HiSeq 4000 /files/ENCFF642BHL/ released mild to moderate bottlenecking, moderate library complexity ENCFF390ZPT fastq reads ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF260XVE 3481464465 Michael Snyder, Stanford 18191d3cae21a531219ec090f7e01835 SRA:SRR5112384 https://www.encodeproject.org/files/ENCFF390ZPT/@@download/ENCFF390ZPT.fastq.gz Illumina HiSeq 4000 /files/ENCFF044RFM/ released mild to moderate bottlenecking, moderate library complexity ENCFF260XVE fastq reads ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF390ZPT 3734488649 Michael Snyder, Stanford db93aebf774fab37321d725bb3502f06 SRA:SRR5112384 https://www.encodeproject.org/files/ENCFF260XVE/@@download/ENCFF260XVE.fastq.gz Illumina HiSeq 4000 /files/ENCFF833AEQ/ released mild to moderate bottlenecking, moderate library complexity ENCFF895OQI fastq reads ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF204LGU 3206267583 Michael Snyder, Stanford d56d6ffb76d35c04e61ef71976236c1b SRA:SRR5112383 https://www.encodeproject.org/files/ENCFF895OQI/@@download/ENCFF895OQI.fastq.gz Illumina HiSeq 4000 /files/ENCFF321ZMO/ released mild to moderate bottlenecking, moderate library complexity ENCFF175EMG bam unfiltered alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 100 ENCFF204LGU, ENCFF643CGH, ENCFF895OQI 6187174245 ENCODE Processing Pipeline ae1e23d5122cc79e9924e6d4c450398f https://www.encodeproject.org/files/ENCFF175EMG/@@download/ENCFF175EMG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF703HQU bam unfiltered alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 100 ENCFF260XVE, ENCFF390ZPT, ENCFF643CGH 6733299166 ENCODE Processing Pipeline 6ff21f43e423593ae154779faabbfe32 https://www.encodeproject.org/files/ENCFF703HQU/@@download/ENCFF703HQU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF063XBF bam unfiltered alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 100 ENCFF204LGU, ENCFF807MUK, ENCFF895OQI 6180559889 ENCODE Processing Pipeline ea4f374c72ac0df44b0edaceeb272999 https://www.encodeproject.org/files/ENCFF063XBF/@@download/ENCFF063XBF.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF036ZST bam unfiltered alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 100 ENCFF260XVE, ENCFF390ZPT, ENCFF807MUK 6725746733 ENCODE Processing Pipeline 1ac03fb8a6721be976d29f794cadf93a https://www.encodeproject.org/files/ENCFF036ZST/@@download/ENCFF036ZST.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF271AMR bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 100 ENCFF204LGU, ENCFF643CGH, ENCFF895OQI 4235669788 ENCODE Processing Pipeline cd8a7680f94de5ff0592d1677376682b https://www.encodeproject.org/files/ENCFF271AMR/@@download/ENCFF271AMR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF284OXU bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 100 ENCFF260XVE, ENCFF390ZPT, ENCFF643CGH 4697535281 ENCODE Processing Pipeline 429c070e3cb6992c047c27a7644d0aee https://www.encodeproject.org/files/ENCFF284OXU/@@download/ENCFF284OXU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF467TEV bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 100 ENCFF260XVE, ENCFF390ZPT, ENCFF807MUK 4691945473 ENCODE Processing Pipeline b1f41cbad0d99709da786f52ab3dd7f1 https://www.encodeproject.org/files/ENCFF467TEV/@@download/ENCFF467TEV.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF258YYG bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 100 ENCFF204LGU, ENCFF807MUK, ENCFF895OQI 4231183045 ENCODE Processing Pipeline a1bc9d5896dfad782184a1c27dbefa10 https://www.encodeproject.org/files/ENCFF258YYG/@@download/ENCFF258YYG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF474BLZ bigWig signal p-value ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF284OXU, ENCFF705ARK, ENCFF802NAW 1736318231 ENCODE Processing Pipeline 4bfa83b9ce77f2731b767be4a9722788 https://www.encodeproject.org/files/ENCFF474BLZ/@@download/ENCFF474BLZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF194OBU bigWig fold change over control ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF271AMR, ENCFF284OXU, ENCFF705ARK, ENCFF802NAW 2448328789 ENCODE Processing Pipeline 13c6c7312b5433c55d7290d9620f553a https://www.encodeproject.org/files/ENCFF194OBU/@@download/ENCFF194OBU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF275OPF bigWig signal p-value ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF271AMR, ENCFF705ARK, ENCFF802NAW 1671533485 ENCODE Processing Pipeline b11019634744cc9088bbcb2656e30117 https://www.encodeproject.org/files/ENCFF275OPF/@@download/ENCFF275OPF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF898YJB bigWig signal p-value ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF271AMR, ENCFF284OXU, ENCFF705ARK, ENCFF802NAW 2395599542 ENCODE Processing Pipeline faa4986223abc82c695df905254c5c83 https://www.encodeproject.org/files/ENCFF898YJB/@@download/ENCFF898YJB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF389NTA bigWig fold change over control ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF271AMR, ENCFF705ARK, ENCFF802NAW 1856544698 ENCODE Processing Pipeline 2b0edc373d6105652f65e258236c3e76 https://www.encodeproject.org/files/ENCFF389NTA/@@download/ENCFF389NTA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF536MOQ bigWig fold change over control ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF284OXU, ENCFF705ARK, ENCFF802NAW 1904223616 ENCODE Processing Pipeline 3535d5750171b441d2c60bc009961d27 https://www.encodeproject.org/files/ENCFF536MOQ/@@download/ENCFF536MOQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF818JIV bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF271AMR, ENCFF705ARK, ENCFF802NAW 6729025 ENCODE Processing Pipeline a9471d0aadbf80e5f9aad3e4142143ae https://www.encodeproject.org/files/ENCFF818JIV/@@download/ENCFF818JIV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF837JWQ bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF271AMR, ENCFF284OXU, ENCFF705ARK, ENCFF802NAW 7207526 ENCODE Processing Pipeline e9ac3fb82cd08c65a1b147ca9753d404 https://www.encodeproject.org/files/ENCFF837JWQ/@@download/ENCFF837JWQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF173IYO bigBed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF165ZQR 11148616 ENCODE Processing Pipeline 8d7e527eccddf3865019e66fa5eefcd9 https://www.encodeproject.org/files/ENCFF173IYO/@@download/ENCFF173IYO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF165ZQR bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF284OXU, ENCFF705ARK, ENCFF802NAW 6832985 ENCODE Processing Pipeline be81e4187887ca1808c53194878663f2 https://www.encodeproject.org/files/ENCFF165ZQR/@@download/ENCFF165ZQR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF421INQ bed narrowPeak optimal idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF165ZQR, ENCFF419RSJ, ENCFF818JIV, ENCFF837JWQ 43821 ENCODE Processing Pipeline d9c8b4fdba039d26f7782c6dd7ea7257 https://www.encodeproject.org/files/ENCFF421INQ/@@download/ENCFF421INQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF727PCG bigBed narrowPeak optimal idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF421INQ 149505 ENCODE Processing Pipeline af1b50428c86c299e436593af899e454 https://www.encodeproject.org/files/ENCFF727PCG/@@download/ENCFF727PCG.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF508XOP bigBed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF818JIV 11178220 ENCODE Processing Pipeline da33030047f19e9980d58d414b2a1717 https://www.encodeproject.org/files/ENCFF508XOP/@@download/ENCFF508XOP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF908ZHS bigBed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF837JWQ 11126114 ENCODE Processing Pipeline e449a310b699dee740c7b3ad413bcf3e https://www.encodeproject.org/files/ENCFF908ZHS/@@download/ENCFF908ZHS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF716KZE bed narrowPeak conservative idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF165ZQR, ENCFF419RSJ, ENCFF818JIV, ENCFF837JWQ 38025 ENCODE Processing Pipeline f7d6352471da37aff4267e9f7a0a5942 https://www.encodeproject.org/files/ENCFF716KZE/@@download/ENCFF716KZE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF301WGN bigBed narrowPeak conservative idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF716KZE 119035 ENCODE Processing Pipeline 8bc59d93101de088af1be0a5ddd02a01 https://www.encodeproject.org/files/ENCFF301WGN/@@download/ENCFF301WGN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF211JDE bigWig signal p-value ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF258YYG, ENCFF529BVI, ENCFF772FBN 1624582927 ENCODE Processing Pipeline a482397160463de95bb4c6b88d7a0b60 https://www.encodeproject.org/files/ENCFF211JDE/@@download/ENCFF211JDE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF056PCK bigWig signal p-value ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 1479312640 ENCODE Processing Pipeline fc5093b217ecc79228a61d716228ce9b https://www.encodeproject.org/files/ENCFF056PCK/@@download/ENCFF056PCK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF239TMY bigWig signal p-value ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF258YYG, ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 2368763572 ENCODE Processing Pipeline d856269f1196eb5b9e99ab75472f5a64 https://www.encodeproject.org/files/ENCFF239TMY/@@download/ENCFF239TMY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF080VLK bigWig fold change over control ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF258YYG, ENCFF529BVI, ENCFF772FBN 1840841745 ENCODE Processing Pipeline f64cd1f4c9423a9e5af05226c6bb8dbc https://www.encodeproject.org/files/ENCFF080VLK/@@download/ENCFF080VLK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF505NZS bigWig fold change over control ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 1888027700 ENCODE Processing Pipeline 396c8c6624cd960c9a7c6562140fb7d2 https://www.encodeproject.org/files/ENCFF505NZS/@@download/ENCFF505NZS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF549OSN bigWig fold change over control ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF258YYG, ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 2419221680 ENCODE Processing Pipeline c29fbb09030ac19455bcb6ed3b2b25e9 https://www.encodeproject.org/files/ENCFF549OSN/@@download/ENCFF549OSN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF079EBS bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 6826910 ENCODE Processing Pipeline c897f38b7bcc14db5ddfddd58e96799d https://www.encodeproject.org/files/ENCFF079EBS/@@download/ENCFF079EBS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF327WVX bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF258YYG, ENCFF529BVI, ENCFF772FBN 6722915 ENCODE Processing Pipeline 6511f93ad87cabb1b0bea39e8dde0ea3 https://www.encodeproject.org/files/ENCFF327WVX/@@download/ENCFF327WVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF026UVT bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF258YYG, ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 7195270 ENCODE Processing Pipeline 061b6ac21fae004fc35c805ac87fa864 https://www.encodeproject.org/files/ENCFF026UVT/@@download/ENCFF026UVT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF772BZB bigBed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF079EBS 11129178 ENCODE Processing Pipeline b41ae0f23687c83d1161ff72f5ed4e17 https://www.encodeproject.org/files/ENCFF772BZB/@@download/ENCFF772BZB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF638RFH bigBed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF026UVT 11101721 ENCODE Processing Pipeline 08fc6c9a2aabe8636b308afeaa511d6a https://www.encodeproject.org/files/ENCFF638RFH/@@download/ENCFF638RFH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF546GDM bigBed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF327WVX 11157649 ENCODE Processing Pipeline 45941f3bb43883240c8a70a199a5f549 https://www.encodeproject.org/files/ENCFF546GDM/@@download/ENCFF546GDM.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF970EKQ bed narrowPeak conservative idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF026UVT, ENCFF079EBS, ENCFF327WVX 37188 ENCODE Processing Pipeline 5cd32ef347910c6b715de4826848d317 https://www.encodeproject.org/files/ENCFF970EKQ/@@download/ENCFF970EKQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF630BFN bigBed narrowPeak conservative idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF970EKQ 115787 ENCODE Processing Pipeline 096d4bbe4ac5e2a0cd8b7ad190422628 https://www.encodeproject.org/files/ENCFF630BFN/@@download/ENCFF630BFN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF223YXP bed narrowPeak optimal idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF026UVT, ENCFF079EBS, ENCFF327WVX 45043 ENCODE Processing Pipeline 7759e7359a29237473e4bdd33e0ea03e https://www.encodeproject.org/files/ENCFF223YXP/@@download/ENCFF223YXP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF932WPG bigBed narrowPeak optimal idr thresholded peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF223YXP 149210 ENCODE Processing Pipeline 5a3c56a6ae61b7f110d2dfd2beb10545 https://www.encodeproject.org/files/ENCFF932WPG/@@download/ENCFF932WPG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF001HKJ bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HKU 594242299 John Stamatoyannopoulos, UW b4713d69c0470797b7a78a878e4dcac3 https://www.encodeproject.org/files/ENCFF001HKJ/@@download/ENCFF001HKJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKK bigBed broadPeak hotspots ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XQB 2703232 John Stamatoyannopoulos, UW 1d002de69833e504da4e88aec4a909ee https://www.encodeproject.org/files/ENCFF001HKK/@@download/ENCFF001HKK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKL bigBed broadPeak hotspots ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XQC 4148114 John Stamatoyannopoulos, UW c3110e87cf41809ea1674d0f8ce71530 https://www.encodeproject.org/files/ENCFF001HKL/@@download/ENCFF001HKL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKM bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XQD 890484 John Stamatoyannopoulos, UW 63970679492671797d4e8b0d1f2fc78c https://www.encodeproject.org/files/ENCFF001HKM/@@download/ENCFF001HKM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKN bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XQE 1133048 John Stamatoyannopoulos, UW 1de7269fd89410bf4c7b1df9dcc89adf https://www.encodeproject.org/files/ENCFF001HKN/@@download/ENCFF001HKN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKP bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKV 684869203 John Stamatoyannopoulos, UW 8c479be476c357050312343ac1ad468e https://www.encodeproject.org/files/ENCFF001HKP/@@download/ENCFF001HKP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKQ bigWig raw signal ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HKJ 116233417 John Stamatoyannopoulos, UW 53b6e491a902c2786419f87eb58a4437 https://www.encodeproject.org/files/ENCFF001HKQ/@@download/ENCFF001HKQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKR bigWig raw signal ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKP 121445555 John Stamatoyannopoulos, UW cff457c1639945599a80528a61bbdcd1 https://www.encodeproject.org/files/ENCFF001HKR/@@download/ENCFF001HKR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HKU fastq reads ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 678301714 John Stamatoyannopoulos, UW 37882a14041fd35eadeec85c36f8fe4e https://www.encodeproject.org/files/ENCFF001HKU/@@download/ENCFF001HKU.fastq.gz Illumina Genome Analyzer /files/ENCFF001HLJ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001HKV fastq reads ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 909309847 John Stamatoyannopoulos, UW eb7e1d190c4806d7373d87a8e35f12cc https://www.encodeproject.org/files/ENCFF001HKV/@@download/ENCFF001HKV.fastq.gz Illumina Genome Analyzer /files/ENCFF001HLJ/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001XQB bed broadPeak hotspots ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HKJ 1835738 John Stamatoyannopoulos, UW d2c5afc70298c7b91c9ea4ae669d87c6 https://www.encodeproject.org/files/ENCFF001XQB/@@download/ENCFF001XQB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XQC bed broadPeak hotspots ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKP 2231741 John Stamatoyannopoulos, UW 1ac1010ed351c03328c5a67be0a94eb8 https://www.encodeproject.org/files/ENCFF001XQC/@@download/ENCFF001XQC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XQD bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HKJ 597913 John Stamatoyannopoulos, UW 30fb1e326e7a3565ea5b075187d289a5 https://www.encodeproject.org/files/ENCFF001XQD/@@download/ENCFF001XQD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XQE bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKP 800970 John Stamatoyannopoulos, UW d3a793e194cd93b043a032662f5878b1 https://www.encodeproject.org/files/ENCFF001XQE/@@download/ENCFF001XQE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF002DCR bed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HKJ, ENCFF001HKP 1008976 ENCODE Consortium Analysis Working Group a940b25f9df0e1d4537b3d03d4b2859f https://www.encodeproject.org/files/ENCFF002DCR/@@download/ENCFF002DCR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF492HLY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DCR 2072193 ENCODE Consortium 3d564a4883f58a2092e4d379530fabf4 https://www.encodeproject.org/files/ENCFF492HLY/@@download/ENCFF492HLY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF141FKQ bam unfiltered alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HKU, ENCFF643CGH 768557235 ENCODE Processing Pipeline cea604816fe68d9d5d61254b482495b8 https://www.encodeproject.org/files/ENCFF141FKQ/@@download/ENCFF141FKQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF535MRQ bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HKU, ENCFF643CGH 495850682 ENCODE Processing Pipeline ef7eb0a73ab049d454a98943e887b8c6 https://www.encodeproject.org/files/ENCFF535MRQ/@@download/ENCFF535MRQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF279EZQ bam unfiltered alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HKV, ENCFF643CGH 974034335 ENCODE Processing Pipeline 2c3eebc4284cceff0496c79e12c37ef1 https://www.encodeproject.org/files/ENCFF279EZQ/@@download/ENCFF279EZQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF396STC bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HKV, ENCFF643CGH 588813898 ENCODE Processing Pipeline 263dc36d2363aaa5699fa49ae0bdb064 https://www.encodeproject.org/files/ENCFF396STC/@@download/ENCFF396STC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF983KRP bam unfiltered alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HKV, ENCFF807MUK 972027385 ENCODE Processing Pipeline 3e73dbbd7c854fa5edd19aa4b673d061 https://www.encodeproject.org/files/ENCFF983KRP/@@download/ENCFF983KRP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF599WUT bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HKU, ENCFF807MUK 496083916 ENCODE Processing Pipeline f5395db0ff67d0d83155d708848c16fc https://www.encodeproject.org/files/ENCFF599WUT/@@download/ENCFF599WUT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF650OIZ bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HKV, ENCFF807MUK 589040946 ENCODE Processing Pipeline b64f3b7a991d321e9d60cb209b95aaec https://www.encodeproject.org/files/ENCFF650OIZ/@@download/ENCFF650OIZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF466VFW bam unfiltered alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HKU, ENCFF807MUK 765844396 ENCODE Processing Pipeline 425cc4f1f9d829cddaac1a830927616b https://www.encodeproject.org/files/ENCFF466VFW/@@download/ENCFF466VFW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF622UKA bigWig signal p-value ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF535MRQ, ENCFF757OWU 427141976 ENCODE Processing Pipeline 862f6797f161ac70276c988154810178 https://www.encodeproject.org/files/ENCFF622UKA/@@download/ENCFF622UKA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF659HUV bigWig signal p-value ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF396STC, ENCFF757OWU 378906799 ENCODE Processing Pipeline ee8f214d26ad455b2664683fd7386139 https://www.encodeproject.org/files/ENCFF659HUV/@@download/ENCFF659HUV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF133AVF bigWig signal p-value ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF396STC, ENCFF535MRQ, ENCFF757OWU 492768120 ENCODE Processing Pipeline d7af0442a6aeea3b2c8d31fe93c7d528 https://www.encodeproject.org/files/ENCFF133AVF/@@download/ENCFF133AVF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF410TYS bigWig fold change over control ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF535MRQ, ENCFF757OWU 263007702 ENCODE Processing Pipeline 6adb761de69efa2c6976dfcc5b3185ca https://www.encodeproject.org/files/ENCFF410TYS/@@download/ENCFF410TYS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF356GCX bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF396STC, ENCFF757OWU 4547474 ENCODE Processing Pipeline 987d9a3385926d29c19ed14f9a724b98 https://www.encodeproject.org/files/ENCFF356GCX/@@download/ENCFF356GCX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF463LKP bigWig fold change over control ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF396STC, ENCFF757OWU 283549643 ENCODE Processing Pipeline c3dfa57ccedf3d7207a94cce2f0c27ad https://www.encodeproject.org/files/ENCFF463LKP/@@download/ENCFF463LKP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF467BZS bigWig fold change over control ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF396STC, ENCFF535MRQ, ENCFF757OWU 473461001 ENCODE Processing Pipeline f49d2e76e9085e1d9516ec2e57e4574a https://www.encodeproject.org/files/ENCFF467BZS/@@download/ENCFF467BZS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF530JSJ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF535MRQ, ENCFF757OWU 4511337 ENCODE Processing Pipeline 9056ea6a0cf1702eb6edfc797773c65a https://www.encodeproject.org/files/ENCFF530JSJ/@@download/ENCFF530JSJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF750BRK bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF530JSJ 10839661 ENCODE Processing Pipeline f123da412b8b5893cf9c89f670d84c97 https://www.encodeproject.org/files/ENCFF750BRK/@@download/ENCFF750BRK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF306OJZ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF396STC, ENCFF535MRQ, ENCFF757OWU 5004794 ENCODE Processing Pipeline a74d97679a3503a1677fd6fac0c95fbc https://www.encodeproject.org/files/ENCFF306OJZ/@@download/ENCFF306OJZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF700UZN bed narrowPeak conservative idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF306OJZ, ENCFF356GCX, ENCFF419RSJ, ENCFF530JSJ 759875 ENCODE Processing Pipeline cc9a364f6e494456490626c7dcfd267e https://www.encodeproject.org/files/ENCFF700UZN/@@download/ENCFF700UZN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF085HRV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF700UZN 1311496 ENCODE Processing Pipeline 7823b093dee4d0984f45f6e7442dba46 https://www.encodeproject.org/files/ENCFF085HRV/@@download/ENCFF085HRV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF363KZC bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF356GCX 10869577 ENCODE Processing Pipeline d3ae2d9b6e389ae1dd7bf8ee341833f5 https://www.encodeproject.org/files/ENCFF363KZC/@@download/ENCFF363KZC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF069WZH bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF306OJZ 11471264 ENCODE Processing Pipeline a880483cb4c0150b407fde4161389c52 https://www.encodeproject.org/files/ENCFF069WZH/@@download/ENCFF069WZH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF301YXM bed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF306OJZ, ENCFF356GCX, ENCFF419RSJ, ENCFF530JSJ 798011 ENCODE Processing Pipeline 1ec9842f1d3e9d37792d153852e427d5 https://www.encodeproject.org/files/ENCFF301YXM/@@download/ENCFF301YXM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF535KVT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF301YXM 1359310 ENCODE Processing Pipeline 9fbdc3e2bf2cb5bfea88e0d9cb2234f2 https://www.encodeproject.org/files/ENCFF535KVT/@@download/ENCFF535KVT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF704BVP bigWig fold change over control ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF234EAH, ENCFF599WUT 262893639 ENCODE Processing Pipeline f80261bc5424367b4545ce78f3a41009 https://www.encodeproject.org/files/ENCFF704BVP/@@download/ENCFF704BVP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF745PIA bigWig signal p-value ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF234EAH, ENCFF650OIZ 431894799 ENCODE Processing Pipeline 012c6c470a5b15a1c0de637324d1701e https://www.encodeproject.org/files/ENCFF745PIA/@@download/ENCFF745PIA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF518DAD bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF883SBZ 10758524 ENCODE Processing Pipeline 5507e55d008170cd2f4cd14ff4c8a2f4 https://www.encodeproject.org/files/ENCFF518DAD/@@download/ENCFF518DAD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF488TZL bigWig fold change over control ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF234EAH, ENCFF650OIZ 279757431 ENCODE Processing Pipeline e67b0e68c558ee2d3bb5bd26250f5d66 https://www.encodeproject.org/files/ENCFF488TZL/@@download/ENCFF488TZL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF356LKT bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF574BPV 10836028 ENCODE Processing Pipeline f2e42d4883eac7f186b58c1e1fa6f901 https://www.encodeproject.org/files/ENCFF356LKT/@@download/ENCFF356LKT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF726SFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF386NQE 1268109 ENCODE Processing Pipeline be335720f088b5cd838f343b5ea41634 https://www.encodeproject.org/files/ENCFF726SFW/@@download/ENCFF726SFW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF811RUL bigWig signal p-value ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF234EAH, ENCFF599WUT 358717062 ENCODE Processing Pipeline e9c809f3a989ec2a408a31d35e8ecc38 https://www.encodeproject.org/files/ENCFF811RUL/@@download/ENCFF811RUL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF499ILC bigBed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF504WUQ 11352326 ENCODE Processing Pipeline 2d9b53b05a46e86b56dcbd74dd8e72cb https://www.encodeproject.org/files/ENCFF499ILC/@@download/ENCFF499ILC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF298LEX bigWig signal p-value ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF234EAH, ENCFF599WUT, ENCFF650OIZ 490845218 ENCODE Processing Pipeline ef96cc70d01becbe4803bd347cfe9137 https://www.encodeproject.org/files/ENCFF298LEX/@@download/ENCFF298LEX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF574BPV bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF234EAH, ENCFF599WUT 4513051 ENCODE Processing Pipeline b1ba56e9d74ea6d4137505e05b3e4f0f https://www.encodeproject.org/files/ENCFF574BPV/@@download/ENCFF574BPV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF504WUQ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF234EAH, ENCFF599WUT, ENCFF650OIZ 4912104 ENCODE Processing Pipeline 72fb39c2da7b62e6290a3e70f6729266 https://www.encodeproject.org/files/ENCFF504WUQ/@@download/ENCFF504WUQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF386NQE bed narrowPeak conservative idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF504WUQ, ENCFF574BPV, ENCFF883SBZ 735367 ENCODE Processing Pipeline 68f766ae983769f6b9e449faeb86d343 https://www.encodeproject.org/files/ENCFF386NQE/@@download/ENCFF386NQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF266GGD bed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF504WUQ, ENCFF574BPV, ENCFF883SBZ 763849 ENCODE Processing Pipeline 0676fa28175caf0322d3a91f2a8ff9f1 https://www.encodeproject.org/files/ENCFF266GGD/@@download/ENCFF266GGD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF323NDO bigWig fold change over control ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF234EAH, ENCFF599WUT, ENCFF650OIZ 469475955 ENCODE Processing Pipeline 0474fce8d989e48a708b197a24176d7e https://www.encodeproject.org/files/ENCFF323NDO/@@download/ENCFF323NDO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF883SBZ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF234EAH, ENCFF650OIZ 4460441 ENCODE Processing Pipeline dc4d73cbe139008389921ec6d1eb8947 https://www.encodeproject.org/files/ENCFF883SBZ/@@download/ENCFF883SBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF745WNV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF266GGD 1304006 ENCODE Processing Pipeline a3f11d22872a3d3021020ad05f18a977 https://www.encodeproject.org/files/ENCFF745WNV/@@download/ENCFF745WNV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF371NAN fastq reads ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1806136009 Richard Myers, HAIB 8bcdd1ae6c6a88cf8183f16c6e64e440 SRA:SRR5338925 https://www.encodeproject.org/files/ENCFF371NAN/@@download/ENCFF371NAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF345EHR fastq reads ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 2062722923 Richard Myers, HAIB 80827ff7037a2d4c822f7fb8d3965e28 SRA:SRR5338926 https://www.encodeproject.org/files/ENCFF345EHR/@@download/ENCFF345EHR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF465UWH bam unfiltered alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF345EHR, ENCFF643CGH 2234868680 ENCODE Processing Pipeline c1d7be2a9a87a6cd0bd7da1796a737ca https://www.encodeproject.org/files/ENCFF465UWH/@@download/ENCFF465UWH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF142XSK bam unfiltered alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF345EHR, ENCFF807MUK 2236779407 ENCODE Processing Pipeline 05060fd78982ec5460c77a879c2b1390 https://www.encodeproject.org/files/ENCFF142XSK/@@download/ENCFF142XSK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF026KAS bam unfiltered alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF371NAN, ENCFF643CGH 1943869139 ENCODE Processing Pipeline 89d76152915aaacd82eef88560e8286b https://www.encodeproject.org/files/ENCFF026KAS/@@download/ENCFF026KAS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF243MLA bam unfiltered alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF371NAN, ENCFF807MUK 1944849722 ENCODE Processing Pipeline eaeaaf6b72f538df689d80f0c41004ab https://www.encodeproject.org/files/ENCFF243MLA/@@download/ENCFF243MLA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF774TIB bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF371NAN, ENCFF807MUK 1269894450 ENCODE Processing Pipeline 7a23ee176f78414cd117b84d1c135b82 https://www.encodeproject.org/files/ENCFF774TIB/@@download/ENCFF774TIB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF523VQN bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF371NAN, ENCFF643CGH 1270246654 ENCODE Processing Pipeline 06408f1dbf90cdf9d12c63377621124d https://www.encodeproject.org/files/ENCFF523VQN/@@download/ENCFF523VQN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF404YMM bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF345EHR, ENCFF643CGH 1464823134 ENCODE Processing Pipeline 927b077f4503207ea493e150497ed1bb https://www.encodeproject.org/files/ENCFF404YMM/@@download/ENCFF404YMM.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463MDN bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF345EHR, ENCFF807MUK 1464181818 ENCODE Processing Pipeline 1cc146778f6363c8d960c7abf6c7489a https://www.encodeproject.org/files/ENCFF463MDN/@@download/ENCFF463MDN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF752UCV bigWig signal p-value ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF404YMM 494002287 ENCODE Processing Pipeline 499cc2d8c4053465ae1563ab3d30390c https://www.encodeproject.org/files/ENCFF752UCV/@@download/ENCFF752UCV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF933IGL bigWig signal p-value ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF523VQN 639867407 ENCODE Processing Pipeline a2864aea0debd96f908c1abedf59d836 https://www.encodeproject.org/files/ENCFF933IGL/@@download/ENCFF933IGL.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935NVE bigWig signal p-value ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF404YMM, ENCFF523VQN 658118338 ENCODE Processing Pipeline 78cc19a428031330ec0d24ab7aa23ffd https://www.encodeproject.org/files/ENCFF935NVE/@@download/ENCFF935NVE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF154PWP bigWig fold change over control ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF523VQN 487536284 ENCODE Processing Pipeline 3b10e43af5d787f49aba63724ff89a76 https://www.encodeproject.org/files/ENCFF154PWP/@@download/ENCFF154PWP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF042VJD bigWig fold change over control ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF404YMM 539951050 ENCODE Processing Pipeline 36e922d1eab72df4e219411228422ca2 https://www.encodeproject.org/files/ENCFF042VJD/@@download/ENCFF042VJD.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF206SFE bigWig fold change over control ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF404YMM, ENCFF523VQN 855648550 ENCODE Processing Pipeline cb24e3809665647233101e30720ddb8b https://www.encodeproject.org/files/ENCFF206SFE/@@download/ENCFF206SFE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF116GNA bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF523VQN 6499975 ENCODE Processing Pipeline be6349cafd07fece759ad0e700a1bb0c https://www.encodeproject.org/files/ENCFF116GNA/@@download/ENCFF116GNA.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF059YKU bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF404YMM 6468310 ENCODE Processing Pipeline 93d6d768cdc14152975b80e097410162 https://www.encodeproject.org/files/ENCFF059YKU/@@download/ENCFF059YKU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF058MPA bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF404YMM, ENCFF523VQN 6913793 ENCODE Processing Pipeline 6ab806edc92358d4aa1de6fd85031783 https://www.encodeproject.org/files/ENCFF058MPA/@@download/ENCFF058MPA.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF158UYU bigBed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF116GNA 12740585 ENCODE Processing Pipeline 26417ff3624e93f105b9738fe4d97bed https://www.encodeproject.org/files/ENCFF158UYU/@@download/ENCFF158UYU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF910RIN bigBed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF059YKU 12941403 ENCODE Processing Pipeline 67e1dd357ff251335a9559867093b41a https://www.encodeproject.org/files/ENCFF910RIN/@@download/ENCFF910RIN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF102KJV bigBed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF058MPA 12766676 ENCODE Processing Pipeline 3c67b54bfd870d6c2b0c730cc15a7e9f https://www.encodeproject.org/files/ENCFF102KJV/@@download/ENCFF102KJV.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF655VHR bigBed narrowPeak conservative idr thresholded peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF846OVB 1166391 ENCODE Processing Pipeline 835bf6d43ef242ae901f253ab1a86d3e https://www.encodeproject.org/files/ENCFF655VHR/@@download/ENCFF655VHR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF846OVB bed narrowPeak conservative idr thresholded peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF058MPA, ENCFF059YKU, ENCFF116GNA, ENCFF419RSJ 629935 ENCODE Processing Pipeline 7a202780d6387059bd74d8952d68fa23 https://www.encodeproject.org/files/ENCFF846OVB/@@download/ENCFF846OVB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF587YUU bigBed narrowPeak optimal idr thresholded peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF054TEP 1174469 ENCODE Processing Pipeline 270c8210a5f5174bc78807e088867173 https://www.encodeproject.org/files/ENCFF587YUU/@@download/ENCFF587YUU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF054TEP bed narrowPeak optimal idr thresholded peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF058MPA, ENCFF059YKU, ENCFF116GNA, ENCFF419RSJ 635606 ENCODE Processing Pipeline d0d0cdc9bd6d402585dcef6dad2d74c5 https://www.encodeproject.org/files/ENCFF054TEP/@@download/ENCFF054TEP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF588KOY bigWig signal p-value ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF774TIB 1326409800 ENCODE Processing Pipeline 205f02ff231f19a98e088fb2861832c4 https://www.encodeproject.org/files/ENCFF588KOY/@@download/ENCFF588KOY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF692ZFX bigWig signal p-value ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF463MDN 1350287337 ENCODE Processing Pipeline 16d2fe01fbfd996cccf54373f772c10b https://www.encodeproject.org/files/ENCFF692ZFX/@@download/ENCFF692ZFX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF204JJP bigWig fold change over control ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF463MDN 997780014 ENCODE Processing Pipeline 50d55120cab2580f33d573241078bf90 https://www.encodeproject.org/files/ENCFF204JJP/@@download/ENCFF204JJP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF766EZW bigWig signal p-value ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF463MDN, ENCFF774TIB 1585819779 ENCODE Processing Pipeline e6489cd202dc5d2d54e320a83342ca70 https://www.encodeproject.org/files/ENCFF766EZW/@@download/ENCFF766EZW.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF139JFM bigWig fold change over control ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF774TIB 960642416 ENCODE Processing Pipeline 06565f4a757c47ff20bf668028c599bc https://www.encodeproject.org/files/ENCFF139JFM/@@download/ENCFF139JFM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF363YQT bigWig fold change over control ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF463MDN, ENCFF774TIB 1445174405 ENCODE Processing Pipeline 227663b7ea6f91b82f0e3fed228ca4a5 https://www.encodeproject.org/files/ENCFF363YQT/@@download/ENCFF363YQT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF942SPR bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF774TIB 6817291 ENCODE Processing Pipeline 2907ce317efaa297bc43c8ca0eb9cb74 https://www.encodeproject.org/files/ENCFF942SPR/@@download/ENCFF942SPR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF916LOP bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF463MDN, ENCFF774TIB 7164499 ENCODE Processing Pipeline 2f09d70f378e148e7af9414d38c54c59 https://www.encodeproject.org/files/ENCFF916LOP/@@download/ENCFF916LOP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF435TGK bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF463MDN 6966635 ENCODE Processing Pipeline 0bf8d3fdd297d53839ce0fbe5316367a https://www.encodeproject.org/files/ENCFF435TGK/@@download/ENCFF435TGK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF094GPG bigBed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF942SPR 12628791 ENCODE Processing Pipeline c353e211ec8a7d55a92002a59ec06d8c https://www.encodeproject.org/files/ENCFF094GPG/@@download/ENCFF094GPG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF171YYY bigBed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF435TGK 13009795 ENCODE Processing Pipeline f439607b15bbd3162e1afd58784b667f https://www.encodeproject.org/files/ENCFF171YYY/@@download/ENCFF171YYY.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF764VEP bigBed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF916LOP 12840393 ENCODE Processing Pipeline 6300455a45301f6125535c24127be2b7 https://www.encodeproject.org/files/ENCFF764VEP/@@download/ENCFF764VEP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF106DGJ bed narrowPeak optimal idr thresholded peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF435TGK, ENCFF916LOP, ENCFF942SPR 662044 ENCODE Processing Pipeline 97d6977994544427b738f60719368b09 https://www.encodeproject.org/files/ENCFF106DGJ/@@download/ENCFF106DGJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF794QNM bigBed narrowPeak optimal idr thresholded peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF106DGJ 1229368 ENCODE Processing Pipeline ca9d5ad37bcd4b053abbfb98885339e9 https://www.encodeproject.org/files/ENCFF794QNM/@@download/ENCFF794QNM.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000ZJC bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZJP 259903024 Kevin Struhl, HMS 7bba043f13fd97915380b965d114f14e https://www.encodeproject.org/files/ENCFF000ZJC/@@download/ENCFF000ZJC.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZJD bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQA 7130932 Kevin Struhl, HMS 52d0c8115ae349dfd0d111f6af7c8741 https://www.encodeproject.org/files/ENCFF000ZJD/@@download/ENCFF000ZJD.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZJE bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZJQ 457800588 Kevin Struhl, HMS 0f48ceecf8b9eace6dbc23287e18bc80 https://www.encodeproject.org/files/ENCFF000ZJE/@@download/ENCFF000ZJE.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZJF bigWig signal ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 200826071 Kevin Struhl, HMS 85a4502cffb5794823ec4cca2381b946 https://www.encodeproject.org/files/ENCFF000ZJF/@@download/ENCFF000ZJF.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF000ZJP fastq reads ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 642510402 Kevin Struhl, HMS 79baf8ed0156bde50f3f4a657de8403f https://www.encodeproject.org/files/ENCFF000ZJP/@@download/ENCFF000ZJP.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000ZJQ fastq reads ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1138862589 Kevin Struhl, HMS 3e0ec45ac08c5eb561bf12775f6cc237 https://www.encodeproject.org/files/ENCFF000ZJQ/@@download/ENCFF000ZJQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001VQA bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 3716786 Kevin Struhl, HMS 529dc960a934a8553a5389f95903901a https://www.encodeproject.org/files/ENCFF001VQA/@@download/ENCFF001VQA.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF002CZE bed narrowPeak optimal idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 280558 ENCODE Consortium Analysis Working Group 1ddd6ed315bed89eeefb5a854d2662f6 https://www.encodeproject.org/files/ENCFF002CZE/@@download/ENCFF002CZE.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF007LGD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZE 654584 ENCODE Consortium e9510c088e1e87f53b7abee56d66f34a https://www.encodeproject.org/files/ENCFF007LGD/@@download/ENCFF007LGD.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF794DIL bam unfiltered alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJP, ENCFF643CGH 699259736 ENCODE Processing Pipeline eaebd0f4711840391825eb0a593edf08 https://www.encodeproject.org/files/ENCFF794DIL/@@download/ENCFF794DIL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF886GDS bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJP, ENCFF643CGH 272007123 ENCODE Processing Pipeline ecce6a4f4f267379ca9acd7e84cd5816 https://www.encodeproject.org/files/ENCFF886GDS/@@download/ENCFF886GDS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF724XQV bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJQ, ENCFF643CGH 467106189 ENCODE Processing Pipeline 4ef5b5f887933b2928f5210a33e0f82b https://www.encodeproject.org/files/ENCFF724XQV/@@download/ENCFF724XQV.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF255VQY bam unfiltered alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJQ, ENCFF643CGH 1219950537 ENCODE Processing Pipeline 1f8dca68c7cdf4821b4015fc7198b955 https://www.encodeproject.org/files/ENCFF255VQY/@@download/ENCFF255VQY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF549WWZ bam unfiltered alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJP, ENCFF807MUK 695698437 ENCODE Processing Pipeline cfd9032b083d93a67299bc5646847771 https://www.encodeproject.org/files/ENCFF549WWZ/@@download/ENCFF549WWZ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF153RSF bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJP, ENCFF807MUK 272164452 ENCODE Processing Pipeline d976a07ec19edb56e96f7e0366112db1 https://www.encodeproject.org/files/ENCFF153RSF/@@download/ENCFF153RSF.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF927KJM bam unfiltered alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJQ, ENCFF807MUK 1213972297 ENCODE Processing Pipeline 82a2d533aede84d1a2c24fefe5e4a6f5 https://www.encodeproject.org/files/ENCFF927KJM/@@download/ENCFF927KJM.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF037EJX bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJQ, ENCFF807MUK 467349798 ENCODE Processing Pipeline 2a7abbe7157faa227c6082e26b556b12 https://www.encodeproject.org/files/ENCFF037EJX/@@download/ENCFF037EJX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF836PCU bigWig signal p-value ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF886GDS 568674528 ENCODE Processing Pipeline e64bfd70ce4c69e20efeb10e050e47a9 https://www.encodeproject.org/files/ENCFF836PCU/@@download/ENCFF836PCU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF660PME bigWig signal p-value ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF724XQV 655231757 ENCODE Processing Pipeline beec9bd7579b9c67603347640efd353f https://www.encodeproject.org/files/ENCFF660PME/@@download/ENCFF660PME.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF502LRO bigWig fold change over control ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF886GDS 226958254 ENCODE Processing Pipeline 3da575f92e3e17007aa550951235fef3 https://www.encodeproject.org/files/ENCFF502LRO/@@download/ENCFF502LRO.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF727HIH bigWig signal p-value ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF724XQV, ENCFF886GDS 762958581 ENCODE Processing Pipeline 230fba6128cd33b00fe6f1dd3fdd181f https://www.encodeproject.org/files/ENCFF727HIH/@@download/ENCFF727HIH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF619KLA bigWig fold change over control ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF724XQV 389118174 ENCODE Processing Pipeline 70b60522fd38cb3077e5bab719959226 https://www.encodeproject.org/files/ENCFF619KLA/@@download/ENCFF619KLA.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF224YUA bigWig fold change over control ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF724XQV, ENCFF886GDS 552681651 ENCODE Processing Pipeline a038831410cdfb74a6f7ae547a311976 https://www.encodeproject.org/files/ENCFF224YUA/@@download/ENCFF224YUA.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF261YXK bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF724XQV 4454935 ENCODE Processing Pipeline 300f9588311ba1595f6de3f4dd92ca28 https://www.encodeproject.org/files/ENCFF261YXK/@@download/ENCFF261YXK.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF686ZHD bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF724XQV, ENCFF886GDS 4761247 ENCODE Processing Pipeline 5940d278bc89f12a951b520acd9d8d94 https://www.encodeproject.org/files/ENCFF686ZHD/@@download/ENCFF686ZHD.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF359IXR bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF886GDS 2980864 ENCODE Processing Pipeline dffa075b9a9d51732ea7e2befb7776ac https://www.encodeproject.org/files/ENCFF359IXR/@@download/ENCFF359IXR.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF550CGL bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF686ZHD 11213819 ENCODE Processing Pipeline 24d1e2491283f25ef7aa6d59a146075a https://www.encodeproject.org/files/ENCFF550CGL/@@download/ENCFF550CGL.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF357MSL bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF261YXK 10797531 ENCODE Processing Pipeline 7e6dc724b7390ebc8dc025086a529390 https://www.encodeproject.org/files/ENCFF357MSL/@@download/ENCFF357MSL.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF016RFS bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF359IXR 6436366 ENCODE Processing Pipeline 0576bfb94fb66e4459f5f44cb81cbddb https://www.encodeproject.org/files/ENCFF016RFS/@@download/ENCFF016RFS.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF854FKK bed narrowPeak conservative idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF261YXK, ENCFF359IXR, ENCFF419RSJ, ENCFF686ZHD 157705 ENCODE Processing Pipeline b5471023d8ce25815e1d67f4f38ee1c8 https://www.encodeproject.org/files/ENCFF854FKK/@@download/ENCFF854FKK.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF595NUS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF854FKK 310266 ENCODE Processing Pipeline 7512842da459a72893cb45917b106d7a https://www.encodeproject.org/files/ENCFF595NUS/@@download/ENCFF595NUS.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF014OJI bed narrowPeak optimal idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF261YXK, ENCFF359IXR, ENCFF419RSJ, ENCFF686ZHD 245013 ENCODE Processing Pipeline 8144cca5868dcf43de08e5fbeaa88a14 https://www.encodeproject.org/files/ENCFF014OJI/@@download/ENCFF014OJI.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF253SJB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014OJI 421369 ENCODE Processing Pipeline 16d5bdd1646ab9ee0cbe0537d1ae7298 https://www.encodeproject.org/files/ENCFF253SJB/@@download/ENCFF253SJB.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF671ULS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF619MAY 321966 ENCODE Processing Pipeline a219b556abac9a7c203b3777cc9fe6b6 https://www.encodeproject.org/files/ENCFF671ULS/@@download/ENCFF671ULS.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF978WVF bigWig fold change over control ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF037EJX, ENCFF153RSF, ENCFF502MJK 551003269 ENCODE Processing Pipeline 76325570e1f4d607d5df88a2863ed03a https://www.encodeproject.org/files/ENCFF978WVF/@@download/ENCFF978WVF.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF787VIR bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF715ZPN 11253630 ENCODE Processing Pipeline de64a5d9b268dfb9431592017853fd51 https://www.encodeproject.org/files/ENCFF787VIR/@@download/ENCFF787VIR.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF749NEO bigWig fold change over control ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF037EJX, ENCFF502MJK 390427153 ENCODE Processing Pipeline e9e3966e154f16cc5c1d01f5c072abbe https://www.encodeproject.org/files/ENCFF749NEO/@@download/ENCFF749NEO.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF029URA bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF487XXM 10877546 ENCODE Processing Pipeline 784208ed677b2c57d028c9d97e261e79 https://www.encodeproject.org/files/ENCFF029URA/@@download/ENCFF029URA.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF807JAC bed narrowPeak optimal idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF113OOA, ENCFF487XXM, ENCFF715ZPN 254705 ENCODE Processing Pipeline a129bf26832d975432ee1772843b584d https://www.encodeproject.org/files/ENCFF807JAC/@@download/ENCFF807JAC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF715ZPN bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF037EJX, ENCFF153RSF, ENCFF502MJK 4797450 ENCODE Processing Pipeline 107508375f2a99caec18793cefb4a9ca https://www.encodeproject.org/files/ENCFF715ZPN/@@download/ENCFF715ZPN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF260OJD bigBed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF113OOA 6436267 ENCODE Processing Pipeline a397b26deeac80daeed8dbf6ee8442a5 https://www.encodeproject.org/files/ENCFF260OJD/@@download/ENCFF260OJD.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF354GFW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF807JAC 536450 ENCODE Processing Pipeline 2982034bcb56ff7a33ab69023ce577ee https://www.encodeproject.org/files/ENCFF354GFW/@@download/ENCFF354GFW.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF727IRQ bigWig signal p-value ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF153RSF, ENCFF502MJK 540254506 ENCODE Processing Pipeline 44458b76e8f541bbc5ba8a52c47da292 https://www.encodeproject.org/files/ENCFF727IRQ/@@download/ENCFF727IRQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF585XYD bigWig fold change over control ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF153RSF, ENCFF502MJK 226243002 ENCODE Processing Pipeline 428f3c3b40d2e9b8eca5ff0c5e5adeb9 https://www.encodeproject.org/files/ENCFF585XYD/@@download/ENCFF585XYD.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF117XYG bigWig signal p-value ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF037EJX, ENCFF153RSF, ENCFF502MJK 680541567 ENCODE Processing Pipeline 6a513d974710e36fa5a1853b6510d389 https://www.encodeproject.org/files/ENCFF117XYG/@@download/ENCFF117XYG.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF175CAQ bigWig signal p-value ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF037EJX, ENCFF502MJK 621659555 ENCODE Processing Pipeline c5713c65db7a5f22ab1b425068503bae https://www.encodeproject.org/files/ENCFF175CAQ/@@download/ENCFF175CAQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF113OOA bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF153RSF, ENCFF502MJK 2989027 ENCODE Processing Pipeline 9d1607946b585c506f24c1218c08d025 https://www.encodeproject.org/files/ENCFF113OOA/@@download/ENCFF113OOA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF487XXM bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF037EJX, ENCFF502MJK 4523226 ENCODE Processing Pipeline 38acfad5c6be9b3c04af5cdaa4d262e7 https://www.encodeproject.org/files/ENCFF487XXM/@@download/ENCFF487XXM.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF619MAY bed narrowPeak conservative idr thresholded peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF113OOA, ENCFF487XXM, ENCFF715ZPN 164910 ENCODE Processing Pipeline c9235a0bbe9c91814000188d08db6688 https://www.encodeproject.org/files/ENCFF619MAY/@@download/ENCFF619MAY.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF109ZTA fastq reads ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 1 76 single-ended 1165260451 Richard Myers, HAIB 62366674f423c9cc03083d52d39fe795 https://www.encodeproject.org/files/ENCFF109ZTA/@@download/ENCFF109ZTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF655FFZ bam unfiltered alignments ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 76 ENCFF109ZTA, ENCFF643CGH 1387056267 ENCODE Processing Pipeline 299f6e8ed6fa66271460f5e07fe5a021 https://www.encodeproject.org/files/ENCFF655FFZ/@@download/ENCFF655FFZ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF843KIR bam alignments ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 76 ENCFF109ZTA, ENCFF643CGH 1051670560 ENCODE Processing Pipeline 9191d9bd5f7a4e51fcf6234b53e6cd0d https://www.encodeproject.org/files/ENCFF843KIR/@@download/ENCFF843KIR.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF873UUY bam unfiltered alignments ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 76 ENCFF109ZTA, ENCFF807MUK 1384673717 ENCODE Processing Pipeline 49dca777ebb382e882ff05e213d86d14 https://www.encodeproject.org/files/ENCFF873UUY/@@download/ENCFF873UUY.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF753SCW bam alignments ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 76 ENCFF109ZTA, ENCFF807MUK 1051336298 ENCODE Processing Pipeline 53aa0fe93da0af07e4a1a6f2f9bb5245 https://www.encodeproject.org/files/ENCFF753SCW/@@download/ENCFF753SCW.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF299OMB bigWig fold change over control ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF203ABR, ENCFF753SCW 1018661854 ENCODE Processing Pipeline 45bb8631af4b4bdebb035b8ec5f71c96 https://www.encodeproject.org/files/ENCFF299OMB/@@download/ENCFF299OMB.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF788XKR bed narrowPeak peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF203ABR, ENCFF753SCW 7073347 ENCODE Processing Pipeline 99aea6c9383d279944fe83762e4440a8 https://www.encodeproject.org/files/ENCFF788XKR/@@download/ENCFF788XKR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF272RQO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF503IRA 376851 ENCODE Processing Pipeline 400b730dfcf328c82ff0fff1bf27cba8 https://www.encodeproject.org/files/ENCFF272RQO/@@download/ENCFF272RQO.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF599UDQ bigWig signal p-value ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF203ABR, ENCFF753SCW 1117980667 ENCODE Processing Pipeline 4048cf448f320dce03d06ccd4a887751 https://www.encodeproject.org/files/ENCFF599UDQ/@@download/ENCFF599UDQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF503IRA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF001TDO, ENCFF788XKR 161747 ENCODE Processing Pipeline d9cce8faf4ec3d8cf99e50ceed847b26 https://www.encodeproject.org/files/ENCFF503IRA/@@download/ENCFF503IRA.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF248JQD bigBed narrowPeak peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF788XKR 12529454 ENCODE Processing Pipeline 62ae10995a50ed6238d01f4801bb7c6b https://www.encodeproject.org/files/ENCFF248JQD/@@download/ENCFF248JQD.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF791UXQ bed narrowPeak peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF843KIR, ENCFF892OVV 6672394 ENCODE Processing Pipeline 5ab210cba62985c2ca7ebbebed4b5104 https://www.encodeproject.org/files/ENCFF791UXQ/@@download/ENCFF791UXQ.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF701BWF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF419RSJ, ENCFF791UXQ 189335 ENCODE Processing Pipeline 95134b353477ae26cf92052f4fcdc6d4 https://www.encodeproject.org/files/ENCFF701BWF/@@download/ENCFF701BWF.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF676TJU bigWig signal p-value ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF843KIR, ENCFF892OVV 1142423694 ENCODE Processing Pipeline 23cd14c4a6385361ba0a7ac29fa7e738 https://www.encodeproject.org/files/ENCFF676TJU/@@download/ENCFF676TJU.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF992IBB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF701BWF 355343 ENCODE Processing Pipeline b31f52140fd57f4964f08be3e75ba320 https://www.encodeproject.org/files/ENCFF992IBB/@@download/ENCFF992IBB.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF661KMI bigWig fold change over control ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF843KIR, ENCFF892OVV 771216106 ENCODE Processing Pipeline dc5fad1561eb0780f55f572f7ac18e0a https://www.encodeproject.org/files/ENCFF661KMI/@@download/ENCFF661KMI.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF274HUG bigBed narrowPeak peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF791UXQ 12676914 ENCODE Processing Pipeline dc6bbea7f7f624ff4fac8e0c82b9f8ca https://www.encodeproject.org/files/ENCFF274HUG/@@download/ENCFF274HUG.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF257STC fastq reads ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 1101517984 Bradley Bernstein, Broad 39881a4ce30c4526bd940f7826147c6e SRA:SRR5833008 https://www.encodeproject.org/files/ENCFF257STC/@@download/ENCFF257STC.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF777KUN fastq reads ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 1712463553 Bradley Bernstein, Broad cc16e8f30fafe473973934bdec8442f7 SRA:SRR5833009 https://www.encodeproject.org/files/ENCFF777KUN/@@download/ENCFF777KUN.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF824ZHA bam unfiltered alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF643CGH, ENCFF777KUN 1737402096 ENCODE Processing Pipeline 53a363cd0638a0ff8b16d364aabcf799 https://www.encodeproject.org/files/ENCFF824ZHA/@@download/ENCFF824ZHA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF106ATR bam unfiltered alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF257STC, ENCFF643CGH 1321841164 ENCODE Processing Pipeline ee3231564202a6ce33914ac344713c8e https://www.encodeproject.org/files/ENCFF106ATR/@@download/ENCFF106ATR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF580OKG bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF257STC, ENCFF643CGH 1054928606 ENCODE Processing Pipeline 14eede3f54e49837739c22e21578a05c https://www.encodeproject.org/files/ENCFF580OKG/@@download/ENCFF580OKG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF804DKC bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF777KUN 992851318 ENCODE Processing Pipeline fea45a0da633dc0f7c213ee93efcad78 https://www.encodeproject.org/files/ENCFF804DKC/@@download/ENCFF804DKC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF540IGJ bam unfiltered alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF257STC, ENCFF807MUK 1318108496 ENCODE Processing Pipeline 632bd0ff6542d3553c617f9f3f2fb904 https://www.encodeproject.org/files/ENCFF540IGJ/@@download/ENCFF540IGJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF863LQC bam unfiltered alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF777KUN, ENCFF807MUK 1734590254 ENCODE Processing Pipeline 39937ed8886afdaec1203c67a5ca5cb1 https://www.encodeproject.org/files/ENCFF863LQC/@@download/ENCFF863LQC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF508WWL bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF777KUN, ENCFF807MUK 992388802 ENCODE Processing Pipeline 56c9e95c3d83f87eece9a0097cc7e041 https://www.encodeproject.org/files/ENCFF508WWL/@@download/ENCFF508WWL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF389WAT bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF257STC, ENCFF807MUK 1053727661 ENCODE Processing Pipeline e6e055de137a9a229ec02f99f309c2b7 https://www.encodeproject.org/files/ENCFF389WAT/@@download/ENCFF389WAT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF691PTO bigWig signal p-value ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF580OKG, ENCFF714AMB 1031388281 ENCODE Processing Pipeline 504271a1d08d7c50cd0490b91a4d7bc9 https://www.encodeproject.org/files/ENCFF691PTO/@@download/ENCFF691PTO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF752ZNW bigWig fold change over control ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF580OKG, ENCFF714AMB, ENCFF804DKC 1283002163 ENCODE Processing Pipeline a671574305b158d7d8b01d98dcbea027 https://www.encodeproject.org/files/ENCFF752ZNW/@@download/ENCFF752ZNW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF284MGL bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF804DKC 6052948 ENCODE Processing Pipeline ee18e8ad3a75a981cd8b7744c2bf3caa https://www.encodeproject.org/files/ENCFF284MGL/@@download/ENCFF284MGL.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF261TDK bigBed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF587PEP 11403507 ENCODE Processing Pipeline aaa1bbcf9e07f3cf14a1c1323422b3dc https://www.encodeproject.org/files/ENCFF261TDK/@@download/ENCFF261TDK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF606ITS bigWig signal p-value ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF804DKC 1036514501 ENCODE Processing Pipeline 0abe7e67d78f9bf057d370744203e161 https://www.encodeproject.org/files/ENCFF606ITS/@@download/ENCFF606ITS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF587PEP bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF580OKG, ENCFF714AMB 5640035 ENCODE Processing Pipeline 5d562905741f6ddd2ee49ebd4b06fbfd https://www.encodeproject.org/files/ENCFF587PEP/@@download/ENCFF587PEP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF475ABR bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF580OKG, ENCFF714AMB, ENCFF804DKC 6728414 ENCODE Processing Pipeline 1b7e5c72a71f9c3c6172d03d31da661e https://www.encodeproject.org/files/ENCFF475ABR/@@download/ENCFF475ABR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF817FRV bigBed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF284MGL 13307125 ENCODE Processing Pipeline 669ef1ee3501ae52e50456f911c9c54b https://www.encodeproject.org/files/ENCFF817FRV/@@download/ENCFF817FRV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF447GQD bigBed narrowPeak conservative idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF857EDP 163233 ENCODE Processing Pipeline bb2403fd18505c7642d249c47d821210 https://www.encodeproject.org/files/ENCFF447GQD/@@download/ENCFF447GQD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF485XHG bigWig signal p-value ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF580OKG, ENCFF714AMB, ENCFF804DKC 1355737216 ENCODE Processing Pipeline 4dff78a75d02178dfd9df663f939b349 https://www.encodeproject.org/files/ENCFF485XHG/@@download/ENCFF485XHG.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF699GLU bigWig fold change over control ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF580OKG, ENCFF714AMB 903131517 ENCODE Processing Pipeline faacf526f82c9c69842095897cf55278 https://www.encodeproject.org/files/ENCFF699GLU/@@download/ENCFF699GLU.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF512ZYH bigWig fold change over control ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF714AMB, ENCFF804DKC 843940745 ENCODE Processing Pipeline b194230c0c8af5915ea512d27499d2dd https://www.encodeproject.org/files/ENCFF512ZYH/@@download/ENCFF512ZYH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF857EDP bed narrowPeak conservative idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF284MGL, ENCFF419RSJ, ENCFF475ABR, ENCFF587PEP 52345 ENCODE Processing Pipeline d6855d262eb88dad864d6d4803eb2c7b https://www.encodeproject.org/files/ENCFF857EDP/@@download/ENCFF857EDP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF221ORU bigBed narrowPeak optimal idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF110EOX 215151 ENCODE Processing Pipeline f2f7602619f7bd588fdd93c97b8c231e https://www.encodeproject.org/files/ENCFF221ORU/@@download/ENCFF221ORU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF997EZG bigBed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF475ABR 13407040 ENCODE Processing Pipeline 8e3bb12dc9c88c9d1fe4809fa29ece17 https://www.encodeproject.org/files/ENCFF997EZG/@@download/ENCFF997EZG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF110EOX bed narrowPeak optimal idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF284MGL, ENCFF419RSJ, ENCFF475ABR, ENCFF587PEP 83578 ENCODE Processing Pipeline 65a116b809c580a1d85979eb67a73edf https://www.encodeproject.org/files/ENCFF110EOX/@@download/ENCFF110EOX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF258EKR bigWig signal p-value ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF389WAT, ENCFF801GGG, ENCFF881DVS 1009145022 ENCODE Processing Pipeline 589831d149cfcae42189e02a83366770 https://www.encodeproject.org/files/ENCFF258EKR/@@download/ENCFF258EKR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF471VFA bigWig signal p-value ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 988217015 ENCODE Processing Pipeline b90a009b069ba636bfd72577710bbb96 https://www.encodeproject.org/files/ENCFF471VFA/@@download/ENCFF471VFA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF680YMS bigWig signal p-value ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF389WAT, ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 1138255759 ENCODE Processing Pipeline 12d8fe018d2125569a4f21b5a09a89f5 https://www.encodeproject.org/files/ENCFF680YMS/@@download/ENCFF680YMS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF071DZU bigWig fold change over control ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF389WAT, ENCFF801GGG, ENCFF881DVS 902834140 ENCODE Processing Pipeline b29ac5c066b0854712da116b02b0dd9d https://www.encodeproject.org/files/ENCFF071DZU/@@download/ENCFF071DZU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF683WEG bigWig fold change over control ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 844217417 ENCODE Processing Pipeline c1d1ec39156bc4c334699689a195bb07 https://www.encodeproject.org/files/ENCFF683WEG/@@download/ENCFF683WEG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF971DRD bigWig fold change over control ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF389WAT, ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 1289382240 ENCODE Processing Pipeline 907bb19f65fa9c61902095780e582157 https://www.encodeproject.org/files/ENCFF971DRD/@@download/ENCFF971DRD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF997LLV bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF389WAT, ENCFF801GGG, ENCFF881DVS 5746566 ENCODE Processing Pipeline efb97110df368dba7ab6b54018e4d1a8 https://www.encodeproject.org/files/ENCFF997LLV/@@download/ENCFF997LLV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF702IHF bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 6086486 ENCODE Processing Pipeline 90d84b4ead3316d2ce196e7b3305d6f4 https://www.encodeproject.org/files/ENCFF702IHF/@@download/ENCFF702IHF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF353OKS bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF389WAT, ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 6807871 ENCODE Processing Pipeline e9471ef104993c0ec4fde7a035fccae6 https://www.encodeproject.org/files/ENCFF353OKS/@@download/ENCFF353OKS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF524IRN bigBed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF997LLV 13535600 ENCODE Processing Pipeline 0467ba78951bd630f568c0d2ade04bd0 https://www.encodeproject.org/files/ENCFF524IRN/@@download/ENCFF524IRN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF568ECE bigBed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF702IHF 13301262 ENCODE Processing Pipeline 97f526bd8c0f5faf1cc322f904d87d2f https://www.encodeproject.org/files/ENCFF568ECE/@@download/ENCFF568ECE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF289QGK bigBed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF353OKS 13335208 ENCODE Processing Pipeline d9618131a1e01be9de5874098be26606 https://www.encodeproject.org/files/ENCFF289QGK/@@download/ENCFF289QGK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF896PRX bed narrowPeak conservative idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF353OKS, ENCFF702IHF, ENCFF997LLV 50779 ENCODE Processing Pipeline 7b017f59435ec587795d6b1e0c688517 https://www.encodeproject.org/files/ENCFF896PRX/@@download/ENCFF896PRX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF448BAR bigBed narrowPeak optimal idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF626AQW 210246 ENCODE Processing Pipeline bcdbc54f21a9731d0361a1936d6d9762 https://www.encodeproject.org/files/ENCFF448BAR/@@download/ENCFF448BAR.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF612AXM bigBed narrowPeak conservative idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF896PRX 158946 ENCODE Processing Pipeline 53e6b8c697689fe7f544b865bdef3301 https://www.encodeproject.org/files/ENCFF612AXM/@@download/ENCFF612AXM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF626AQW bed narrowPeak optimal idr thresholded peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF353OKS, ENCFF702IHF, ENCFF997LLV 81595 ENCODE Processing Pipeline e66e64a421129739c72abfc146e5d48b https://www.encodeproject.org/files/ENCFF626AQW/@@download/ENCFF626AQW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF375AEC bam unfiltered alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF215BOJ, ENCFF416JNG, ENCFF807MUK 7522756630 ENCODE Processing Pipeline 782b6471a62719fca45f4fa45ad6ed46 https://www.encodeproject.org/files/ENCFF375AEC/@@download/ENCFF375AEC.bam hg19 released borderline replicate concordance ENCFF976YZH bam unfiltered alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF604CSF, ENCFF807MUK, ENCFF863ZBO 5135841006 ENCODE Processing Pipeline 8f33d6fa7e439c67c91159d86a27ac83 https://www.encodeproject.org/files/ENCFF976YZH/@@download/ENCFF976YZH.bam hg19 released borderline replicate concordance ENCFF863ZBO fastq reads ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF604CSF 2318853346 Michael Snyder, Stanford 8241a7565d491342074979d4d8a01f03 SRA:SRR5111773 https://www.encodeproject.org/files/ENCFF863ZBO/@@download/ENCFF863ZBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released borderline replicate concordance ENCFF416JNG fastq reads ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF215BOJ 3552169265 Michael Snyder, Stanford 027aedcf7c887e691048bad9984cfd60 SRA:SRR5111774 https://www.encodeproject.org/files/ENCFF416JNG/@@download/ENCFF416JNG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released borderline replicate concordance ENCFF604CSF fastq reads ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF863ZBO 2360421368 Michael Snyder, Stanford ee826b75ddd7d58c4887d5b349b9c698 SRA:SRR5111773 https://www.encodeproject.org/files/ENCFF604CSF/@@download/ENCFF604CSF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released borderline replicate concordance ENCFF215BOJ fastq reads ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF416JNG 3482680894 Michael Snyder, Stanford 094cf34d802b4e700b68eff9d22a18f1 SRA:SRR5111774 https://www.encodeproject.org/files/ENCFF215BOJ/@@download/ENCFF215BOJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released borderline replicate concordance ENCFF043VGV bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF215BOJ, ENCFF416JNG, ENCFF807MUK 6495987313 ENCODE Processing Pipeline f0bef2ec6e65ca90b3bac4c5f2c2133d https://www.encodeproject.org/files/ENCFF043VGV/@@download/ENCFF043VGV.bam hg19 released borderline replicate concordance ENCFF828SPJ bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF604CSF, ENCFF807MUK, ENCFF863ZBO 4275802176 ENCODE Processing Pipeline 39ddc67bd26a9a8fd73a17dda3a2f39a https://www.encodeproject.org/files/ENCFF828SPJ/@@download/ENCFF828SPJ.bam hg19 released borderline replicate concordance ENCFF768EYH bigWig signal p-value ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG, ENCFF828SPJ 1738132616 ENCODE Processing Pipeline 88471242081737fab49f4c9d9648755c https://www.encodeproject.org/files/ENCFF768EYH/@@download/ENCFF768EYH.bigWig hg19 released borderline replicate concordance ENCFF903VPI bigWig signal p-value ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF828SPJ 898347899 ENCODE Processing Pipeline 553cff38d677a4ab1fba23ade5491aa0 https://www.encodeproject.org/files/ENCFF903VPI/@@download/ENCFF903VPI.bigWig hg19 released borderline replicate concordance ENCFF953KAZ bigWig signal p-value ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG 1453034361 ENCODE Processing Pipeline eaebe6424ba1716fdbfcc96712b27560 https://www.encodeproject.org/files/ENCFF953KAZ/@@download/ENCFF953KAZ.bigWig hg19 released borderline replicate concordance ENCFF115AJN bigWig fold change over control ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF828SPJ 1052598092 ENCODE Processing Pipeline e9f37e39fa83329e81a2beaa6026d901 https://www.encodeproject.org/files/ENCFF115AJN/@@download/ENCFF115AJN.bigWig hg19 released borderline replicate concordance ENCFF345XWQ bigWig fold change over control ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG 1790264222 ENCODE Processing Pipeline dde0e0478d2a01ceb9586c088cd94fe3 https://www.encodeproject.org/files/ENCFF345XWQ/@@download/ENCFF345XWQ.bigWig hg19 released borderline replicate concordance ENCFF199VTL bigWig fold change over control ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG, ENCFF828SPJ 2183560084 ENCODE Processing Pipeline 9002abfbf25b7b27bbff26e08a4f3df0 https://www.encodeproject.org/files/ENCFF199VTL/@@download/ENCFF199VTL.bigWig hg19 released borderline replicate concordance ENCFF512TAK bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF828SPJ 5439904 ENCODE Processing Pipeline ec642a5190a85614893a1b2ebc9bbeec https://www.encodeproject.org/files/ENCFF512TAK/@@download/ENCFF512TAK.bed.gz hg19 released borderline replicate concordance ENCFF665QYO bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG, ENCFF828SPJ 7062388 ENCODE Processing Pipeline e71f9ff65489c52310a46d453ac4fc1a https://www.encodeproject.org/files/ENCFF665QYO/@@download/ENCFF665QYO.bed.gz hg19 released borderline replicate concordance ENCFF698HHG bigBed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF827YDE 11207782 ENCODE Processing Pipeline 84feaf877abdb51ccb623f6c861d4dfa https://www.encodeproject.org/files/ENCFF698HHG/@@download/ENCFF698HHG.bigBed hg19 released borderline replicate concordance ENCFF997RPK bed narrowPeak optimal idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF512TAK, ENCFF665QYO, ENCFF827YDE 21178 ENCODE Processing Pipeline 5327f9e036270e1e5ae60827f370090e https://www.encodeproject.org/files/ENCFF997RPK/@@download/ENCFF997RPK.bed.gz hg19 released borderline replicate concordance ENCFF699LZE bigBed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF665QYO 11119538 ENCODE Processing Pipeline dd00b152915b6a879e6e8b16249ff6b0 https://www.encodeproject.org/files/ENCFF699LZE/@@download/ENCFF699LZE.bigBed hg19 released borderline replicate concordance ENCFF673TND bed narrowPeak conservative idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF512TAK, ENCFF665QYO, ENCFF827YDE 8126 ENCODE Processing Pipeline f464e6c9a792ffcbf3fb9fd9b42794db https://www.encodeproject.org/files/ENCFF673TND/@@download/ENCFF673TND.bed.gz hg19 released borderline replicate concordance ENCFF279CWC bigBed narrowPeak conservative idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF673TND 70452 ENCODE Processing Pipeline 31e1fc517fbc0cf9ee655eacf547782c https://www.encodeproject.org/files/ENCFF279CWC/@@download/ENCFF279CWC.bigBed hg19 released borderline replicate concordance ENCFF827YDE bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG 6689916 ENCODE Processing Pipeline 9fe76792210b133665f8baba5162d01a https://www.encodeproject.org/files/ENCFF827YDE/@@download/ENCFF827YDE.bed.gz hg19 released borderline replicate concordance ENCFF528VZJ bigBed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF512TAK 11211236 ENCODE Processing Pipeline b37c34948ba76bd64aa657d97c5ba88b https://www.encodeproject.org/files/ENCFF528VZJ/@@download/ENCFF528VZJ.bigBed hg19 released borderline replicate concordance ENCFF940BMZ bigBed narrowPeak optimal idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF997RPK 93290 ENCODE Processing Pipeline e0b6405e0e2ec06731e5e7616afd7917 https://www.encodeproject.org/files/ENCFF940BMZ/@@download/ENCFF940BMZ.bigBed hg19 released borderline replicate concordance ENCFF658IOY bam unfiltered alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF604CSF, ENCFF643CGH, ENCFF863ZBO 5145492253 ENCODE Processing Pipeline cad251e4b07c5bed8c2c7767c6310877 https://www.encodeproject.org/files/ENCFF658IOY/@@download/ENCFF658IOY.bam GRCh38 released borderline replicate concordance ENCFF186DXS bam unfiltered alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF215BOJ, ENCFF416JNG, ENCFF643CGH 7536854644 ENCODE Processing Pipeline 14ae8a1b7befdea95b9ee167301ac6cb https://www.encodeproject.org/files/ENCFF186DXS/@@download/ENCFF186DXS.bam GRCh38 released borderline replicate concordance ENCFF525RIY bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF604CSF, ENCFF643CGH, ENCFF863ZBO 4282305199 ENCODE Processing Pipeline da8c9747fef8865b44391338f4cbccb7 https://www.encodeproject.org/files/ENCFF525RIY/@@download/ENCFF525RIY.bam GRCh38 released borderline replicate concordance ENCFF167ASQ bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF215BOJ, ENCFF416JNG, ENCFF643CGH 6505906079 ENCODE Processing Pipeline 15d9075c416c3a9bc3d214181b05e5da https://www.encodeproject.org/files/ENCFF167ASQ/@@download/ENCFF167ASQ.bam GRCh38 released borderline replicate concordance ENCFF237QHY bigWig signal p-value ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF525RIY 856476971 ENCODE Processing Pipeline 542115ef5d07d67c524bcfba72b3aae5 https://www.encodeproject.org/files/ENCFF237QHY/@@download/ENCFF237QHY.bigWig GRCh38 released borderline replicate concordance ENCFF589YHA bigWig signal p-value ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF167ASQ, ENCFF291AFY, ENCFF426RDP 1653231820 ENCODE Processing Pipeline f385531976b96215324e6082339817ab https://www.encodeproject.org/files/ENCFF589YHA/@@download/ENCFF589YHA.bigWig GRCh38 released borderline replicate concordance ENCFF017SSO bigWig signal p-value ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF167ASQ, ENCFF291AFY, ENCFF426RDP, ENCFF525RIY 2024840597 ENCODE Processing Pipeline 326d6755359839344a7270eec79cc594 https://www.encodeproject.org/files/ENCFF017SSO/@@download/ENCFF017SSO.bigWig GRCh38 released borderline replicate concordance ENCFF686BEL bigWig fold change over control ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF525RIY 1054329514 ENCODE Processing Pipeline f98bfe955c32f866fa77f6ca34ad06c4 https://www.encodeproject.org/files/ENCFF686BEL/@@download/ENCFF686BEL.bigWig GRCh38 released borderline replicate concordance ENCFF461LOQ bigWig fold change over control ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF167ASQ, ENCFF291AFY, ENCFF426RDP 1792795729 ENCODE Processing Pipeline 2a1befd3fc4e09cc6a3854ff98f0d100 https://www.encodeproject.org/files/ENCFF461LOQ/@@download/ENCFF461LOQ.bigWig GRCh38 released borderline replicate concordance ENCFF681CSL bigWig fold change over control ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF167ASQ, ENCFF291AFY, ENCFF426RDP, ENCFF525RIY 2200714696 ENCODE Processing Pipeline f395769a5ce40fcd1e417c8df8691bf2 https://www.encodeproject.org/files/ENCFF681CSL/@@download/ENCFF681CSL.bigWig GRCh38 released borderline replicate concordance ENCFF023REC bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF426RDP, ENCFF525RIY 5241587 ENCODE Processing Pipeline f6a3da8d3d2e91a820ebdec5c12b860d https://www.encodeproject.org/files/ENCFF023REC/@@download/ENCFF023REC.bed.gz GRCh38 released borderline replicate concordance ENCFF380MFV bigBed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF023REC 11174397 ENCODE Processing Pipeline 98961c353c83d28cebd08073ec0305ca https://www.encodeproject.org/files/ENCFF380MFV/@@download/ENCFF380MFV.bigBed GRCh38 released borderline replicate concordance ENCFF838FFZ bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF167ASQ, ENCFF291AFY, ENCFF426RDP 6576106 ENCODE Processing Pipeline 1df57a42c420196906daf80b9967858e https://www.encodeproject.org/files/ENCFF838FFZ/@@download/ENCFF838FFZ.bed.gz GRCh38 released borderline replicate concordance ENCFF929BVS bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF167ASQ, ENCFF291AFY, ENCFF426RDP, ENCFF525RIY 7023517 ENCODE Processing Pipeline 95b98ca3ae8ab2df7ade1dc1a6e71cdb https://www.encodeproject.org/files/ENCFF929BVS/@@download/ENCFF929BVS.bed.gz GRCh38 released borderline replicate concordance ENCFF420KJB bed narrowPeak conservative idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023REC, ENCFF419RSJ, ENCFF838FFZ, ENCFF929BVS 10568 ENCODE Processing Pipeline 529e2e8ec832868a49545601eb29de59 https://www.encodeproject.org/files/ENCFF420KJB/@@download/ENCFF420KJB.bed.gz GRCh38 released borderline replicate concordance ENCFF180XXZ bed narrowPeak optimal idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF023REC, ENCFF419RSJ, ENCFF838FFZ, ENCFF929BVS 26336 ENCODE Processing Pipeline 2672112ed32cfe72c2c24cc9341febe6 https://www.encodeproject.org/files/ENCFF180XXZ/@@download/ENCFF180XXZ.bed.gz GRCh38 released borderline replicate concordance ENCFF954DUX bigBed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF838FFZ 11223526 ENCODE Processing Pipeline fa4ba0792b519019fa08e02034f15578 https://www.encodeproject.org/files/ENCFF954DUX/@@download/ENCFF954DUX.bigBed GRCh38 released borderline replicate concordance ENCFF511BVT bigBed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF929BVS 11142260 ENCODE Processing Pipeline 84dc186087f43dfd28444e8e1996e114 https://www.encodeproject.org/files/ENCFF511BVT/@@download/ENCFF511BVT.bigBed GRCh38 released borderline replicate concordance ENCFF188YFC bigBed narrowPeak conservative idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF420KJB 87312 ENCODE Processing Pipeline ca3b0d4f7cc27f5594a05559e14e4fb2 https://www.encodeproject.org/files/ENCFF188YFC/@@download/ENCFF188YFC.bigBed GRCh38 released borderline replicate concordance ENCFF593ZKP bigBed narrowPeak optimal idr thresholded peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF180XXZ 120055 ENCODE Processing Pipeline ac25f8c9ea8ded8da5f0690099635e80 https://www.encodeproject.org/files/ENCFF593ZKP/@@download/ENCFF593ZKP.bigBed GRCh38 released borderline replicate concordance ENCFF533BEJ bam unfiltered alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF162GLI, ENCFF807MUK 1506675731 ENCODE Processing Pipeline ba76dd67cfc457961bbcf9bc21f51c24 https://www.encodeproject.org/files/ENCFF533BEJ/@@download/ENCFF533BEJ.bam hg19 released low read depth, antibody characterized with exemption ENCFF054CJX bam unfiltered alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF658DDY, ENCFF807MUK 1348959989 ENCODE Processing Pipeline e04de0e20d955de51fc381fc86af8d53 https://www.encodeproject.org/files/ENCFF054CJX/@@download/ENCFF054CJX.bam hg19 released low read depth, antibody characterized with exemption ENCFF658DDY fastq reads ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1267697832 Richard Myers, HAIB a6e4fc9ca18eebbfc392a708b69c380d SRA:SRR5339187 https://www.encodeproject.org/files/ENCFF658DDY/@@download/ENCFF658DDY.fastq.gz Illumina HiSeq 2000 /files/ENCFF876NBT/ released low read depth, antibody characterized with exemption ENCFF162GLI fastq reads ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1375458539 Richard Myers, HAIB 75cd7c14984124d1c4e95dc286414569 SRA:SRR5339188 https://www.encodeproject.org/files/ENCFF162GLI/@@download/ENCFF162GLI.fastq.gz Illumina HiSeq 2000 /files/ENCFF737ELZ/ released low read depth, antibody characterized with exemption ENCFF262QTI bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF162GLI, ENCFF807MUK 1101901833 ENCODE Processing Pipeline 4aa5e53470067523250ffdeb35bd6318 https://www.encodeproject.org/files/ENCFF262QTI/@@download/ENCFF262QTI.bam hg19 released low read depth, antibody characterized with exemption ENCFF396PIB bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF658DDY, ENCFF807MUK 937152709 ENCODE Processing Pipeline 83e2f8d1849bff512a2af490aa1b7468 https://www.encodeproject.org/files/ENCFF396PIB/@@download/ENCFF396PIB.bam hg19 released low read depth, antibody characterized with exemption ENCFF140SDM bigWig signal p-value ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 818558768 ENCODE Processing Pipeline a566263e8a9881da7aa8879d9491c1ee https://www.encodeproject.org/files/ENCFF140SDM/@@download/ENCFF140SDM.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF452NOL bigWig signal p-value ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF262QTI, ENCFF969DYI, ENCFF994YBV 912120555 ENCODE Processing Pipeline eff7b6cccc9ac8d5bb44efb4a0889063 https://www.encodeproject.org/files/ENCFF452NOL/@@download/ENCFF452NOL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF135UGH bigWig signal p-value ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF262QTI, ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 952388845 ENCODE Processing Pipeline c512f821f347b30376698ac74a418cf3 https://www.encodeproject.org/files/ENCFF135UGH/@@download/ENCFF135UGH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF937TIJ bigWig fold change over control ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF262QTI, ENCFF969DYI, ENCFF994YBV 783606676 ENCODE Processing Pipeline e1d1795ca9a6144ac6cce1eeae08b6fc https://www.encodeproject.org/files/ENCFF937TIJ/@@download/ENCFF937TIJ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF126ZPO bigWig fold change over control ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 586584794 ENCODE Processing Pipeline 5312ad7f4f07fd8fa274db1ae876d36e https://www.encodeproject.org/files/ENCFF126ZPO/@@download/ENCFF126ZPO.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF574GHX bigWig fold change over control ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF262QTI, ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 1043838235 ENCODE Processing Pipeline bd4a82334508c889442c25818854cfbd https://www.encodeproject.org/files/ENCFF574GHX/@@download/ENCFF574GHX.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF199LZX bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF262QTI, ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 6736859 ENCODE Processing Pipeline 0c17ccb8df844061baa4623755040e52 https://www.encodeproject.org/files/ENCFF199LZX/@@download/ENCFF199LZX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF903URX bigBed narrowPeak optimal idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF076NCP 789314 ENCODE Processing Pipeline 85a19607570b96c15f049465c5cd8053 https://www.encodeproject.org/files/ENCFF903URX/@@download/ENCFF903URX.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF291ZSM bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 6122907 ENCODE Processing Pipeline 4b3f68225b59ddacfb95ce76fb8e4636 https://www.encodeproject.org/files/ENCFF291ZSM/@@download/ENCFF291ZSM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF705ZZH bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF262QTI, ENCFF969DYI, ENCFF994YBV 6223511 ENCODE Processing Pipeline fc123f5bffe8fbbc2c9c80ad0bb2496f https://www.encodeproject.org/files/ENCFF705ZZH/@@download/ENCFF705ZZH.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF568JZL bigBed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF291ZSM 13221629 ENCODE Processing Pipeline 6eb6a2bf16e3b3d73ee2cc5a782d0958 https://www.encodeproject.org/files/ENCFF568JZL/@@download/ENCFF568JZL.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF980KNF bigBed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF199LZX 13419851 ENCODE Processing Pipeline 4d89657090144e2090b8e53cd4d767fd https://www.encodeproject.org/files/ENCFF980KNF/@@download/ENCFF980KNF.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF816PYF bed narrowPeak conservative idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF199LZX, ENCFF291ZSM, ENCFF705ZZH 321208 ENCODE Processing Pipeline 16d62f6dabefd61fbdba64822e95f093 https://www.encodeproject.org/files/ENCFF816PYF/@@download/ENCFF816PYF.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF980ROA bigBed narrowPeak conservative idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF816PYF 712062 ENCODE Processing Pipeline 2cd402c8ebc24b62b07d200f663e0b24 https://www.encodeproject.org/files/ENCFF980ROA/@@download/ENCFF980ROA.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF076NCP bed narrowPeak optimal idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF199LZX, ENCFF291ZSM, ENCFF705ZZH 369919 ENCODE Processing Pipeline 8261a6ff14619464c051031f34bd7e49 https://www.encodeproject.org/files/ENCFF076NCP/@@download/ENCFF076NCP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF547KNT bigBed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF705ZZH 13451145 ENCODE Processing Pipeline 341bf0cd5feb3fa806ba5d0a39627f2f https://www.encodeproject.org/files/ENCFF547KNT/@@download/ENCFF547KNT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF889NFY bam unfiltered alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF162GLI, ENCFF643CGH 1513039546 ENCODE Processing Pipeline aa98dbc02b4afee0956effc150429c86 https://www.encodeproject.org/files/ENCFF889NFY/@@download/ENCFF889NFY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF914XSR bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF162GLI, ENCFF643CGH 1101700934 ENCODE Processing Pipeline 0c53905205ecf3be47bc41f40f0c8c4d https://www.encodeproject.org/files/ENCFF914XSR/@@download/ENCFF914XSR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF549NZM bam unfiltered alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF658DDY 1352856829 ENCODE Processing Pipeline f383a348cb1158a85644ea5383400d7d https://www.encodeproject.org/files/ENCFF549NZM/@@download/ENCFF549NZM.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF970XFN bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF658DDY 936723023 ENCODE Processing Pipeline 7da6c0a793cee1ab387f89d1e0fa491e https://www.encodeproject.org/files/ENCFF970XFN/@@download/ENCFF970XFN.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF347FWQ bigWig signal p-value ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF372RRO, ENCFF894EOG, ENCFF970XFN 924666690 ENCODE Processing Pipeline 44000f529bb1a7d299022daeefeb32b0 https://www.encodeproject.org/files/ENCFF347FWQ/@@download/ENCFF347FWQ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF051GYW bigWig signal p-value ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF372RRO, ENCFF894EOG, ENCFF914XSR 981124544 ENCODE Processing Pipeline c10dc98131d10c1e965708d834f13f81 https://www.encodeproject.org/files/ENCFF051GYW/@@download/ENCFF051GYW.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF880ODS bigWig signal p-value ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF372RRO, ENCFF894EOG, ENCFF914XSR, ENCFF970XFN 1044762069 ENCODE Processing Pipeline bb717b5afdae659c8096c308b575783a https://www.encodeproject.org/files/ENCFF880ODS/@@download/ENCFF880ODS.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF171DAD bigWig fold change over control ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF372RRO, ENCFF894EOG, ENCFF970XFN 584888854 ENCODE Processing Pipeline 9f6c65a26db8d979644938f4d6860228 https://www.encodeproject.org/files/ENCFF171DAD/@@download/ENCFF171DAD.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF040IVU bigWig fold change over control ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF372RRO, ENCFF894EOG, ENCFF914XSR 784574949 ENCODE Processing Pipeline 12f022468e63f61720d98932aef61ba9 https://www.encodeproject.org/files/ENCFF040IVU/@@download/ENCFF040IVU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF744PPC bigWig fold change over control ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF372RRO, ENCFF894EOG, ENCFF914XSR, ENCFF970XFN 1041641505 ENCODE Processing Pipeline af283e50df1907a4bbc9ec0c0b07a9ab https://www.encodeproject.org/files/ENCFF744PPC/@@download/ENCFF744PPC.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF126MEE bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF372RRO, ENCFF894EOG, ENCFF914XSR 6200531 ENCODE Processing Pipeline c7f6cfc45fa2c6121ed252706ffd7b05 https://www.encodeproject.org/files/ENCFF126MEE/@@download/ENCFF126MEE.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF988PXY bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF372RRO, ENCFF894EOG, ENCFF970XFN 5956915 ENCODE Processing Pipeline bfaf01393b8414943946644b9a03ec83 https://www.encodeproject.org/files/ENCFF988PXY/@@download/ENCFF988PXY.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF151PGJ bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF372RRO, ENCFF894EOG, ENCFF914XSR, ENCFF970XFN 6585496 ENCODE Processing Pipeline 09b769d22e0937039de4abc6f4702f04 https://www.encodeproject.org/files/ENCFF151PGJ/@@download/ENCFF151PGJ.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF641PYI bigBed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF988PXY 13200466 ENCODE Processing Pipeline 205a4005bbb83a941de7d8c8ec2410fd https://www.encodeproject.org/files/ENCFF641PYI/@@download/ENCFF641PYI.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF012HGG bigBed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF126MEE 13459643 ENCODE Processing Pipeline f8cc6cb92c25026daa18aa18a40df3e4 https://www.encodeproject.org/files/ENCFF012HGG/@@download/ENCFF012HGG.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF380IQS bed narrowPeak conservative idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF126MEE, ENCFF151PGJ, ENCFF419RSJ, ENCFF988PXY 319076 ENCODE Processing Pipeline 2a7e55e5e6dda2cb0988f8d368313366 https://www.encodeproject.org/files/ENCFF380IQS/@@download/ENCFF380IQS.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF373KMF bigBed narrowPeak conservative idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF380IQS 708781 ENCODE Processing Pipeline bc2de1315422e510470577f26c31402a https://www.encodeproject.org/files/ENCFF373KMF/@@download/ENCFF373KMF.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF443EBO bigBed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF151PGJ 13406671 ENCODE Processing Pipeline 979c900ce299a80108a5ac6676f38205 https://www.encodeproject.org/files/ENCFF443EBO/@@download/ENCFF443EBO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF710CRT bed narrowPeak optimal idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF126MEE, ENCFF151PGJ, ENCFF419RSJ, ENCFF988PXY 364208 ENCODE Processing Pipeline 4a19df60a477c71ed93a0f834ba1db20 https://www.encodeproject.org/files/ENCFF710CRT/@@download/ENCFF710CRT.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF833NQF bigBed narrowPeak optimal idr thresholded peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF710CRT 783253 ENCODE Processing Pipeline 1fdb3c8848eecc8d50871553d1ca25ca https://www.encodeproject.org/files/ENCFF833NQF/@@download/ENCFF833NQF.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF000PJV bigBed broadPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UGI 615083 Richard Myers, HAIB b8bfbcd1240a0df22f5cf5e641e78dc0 https://www.encodeproject.org/files/ENCFF000PJV/@@download/ENCFF000PJV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PJW bigBed broadPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UGJ 209964 Richard Myers, HAIB 805cd6292b0bdb0d78b0932eca338920 https://www.encodeproject.org/files/ENCFF000PJW/@@download/ENCFF000PJW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PJY bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PKJ 1029638068 Richard Myers, HAIB 66f924650054e4c2e0e12dc6bc234975 https://www.encodeproject.org/files/ENCFF000PJY/@@download/ENCFF000PJY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PJZ bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PKH 1226801692 Richard Myers, HAIB 347da546121a1fb8f66b01704e6e7cbd https://www.encodeproject.org/files/ENCFF000PJZ/@@download/ENCFF000PJZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PKA bigWig raw signal ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 1 26425229 Richard Myers, HAIB 1d370c95ef8237ff731eb63a42b8cfea https://www.encodeproject.org/files/ENCFF000PKA/@@download/ENCFF000PKA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PKB bigWig raw signal ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 1 13225521 Richard Myers, HAIB b653fc6346b7bb7b34a9b1e89b85c14f https://www.encodeproject.org/files/ENCFF000PKB/@@download/ENCFF000PKB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PKH fastq reads ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1063709029 Richard Myers, HAIB 6d7019646524af2cf8e09dbaa1bfd4f2 https://www.encodeproject.org/files/ENCFF000PKH/@@download/ENCFF000PKH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PKJ fastq reads ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 929680960 Richard Myers, HAIB 36f3e7ed03201363163a4dfe6c5cb266 https://www.encodeproject.org/files/ENCFF000PKJ/@@download/ENCFF000PKJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF001UGI bed broadPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 1 362571 Richard Myers, HAIB f82d71ed0f403eb67c4cd195d4914b5c https://www.encodeproject.org/files/ENCFF001UGI/@@download/ENCFF001UGI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001UGJ bed broadPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 1 109420 Richard Myers, HAIB d61620e8d441ab2b5e237930c9af24f5 https://www.encodeproject.org/files/ENCFF001UGJ/@@download/ENCFF001UGJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CKO bed narrowPeak optimal idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 453401 ENCODE Consortium Analysis Working Group 0161422718c3df687e5093500f560cca https://www.encodeproject.org/files/ENCFF002CKO/@@download/ENCFF002CKO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF167BHG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKO 951762 ENCODE Consortium a9df41b77783fa9dc202e9d9419bfe8a https://www.encodeproject.org/files/ENCFF167BHG/@@download/ENCFF167BHG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF830YVW bam unfiltered alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKJ, ENCFF643CGH 1225477049 ENCODE Processing Pipeline c1da923c1d153b3b60b5c1d9837e964b https://www.encodeproject.org/files/ENCFF830YVW/@@download/ENCFF830YVW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF444CNM bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKJ, ENCFF643CGH 656567955 ENCODE Processing Pipeline e00bc8a55047ddc2f5b0487bf63b9c3e https://www.encodeproject.org/files/ENCFF444CNM/@@download/ENCFF444CNM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF003EYJ bam unfiltered alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKH, ENCFF643CGH 1441507174 ENCODE Processing Pipeline 134fe308356414eda6c86bd143d720d1 https://www.encodeproject.org/files/ENCFF003EYJ/@@download/ENCFF003EYJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF960YUK bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKH, ENCFF643CGH 956507218 ENCODE Processing Pipeline aa7999402d824e6de82c0161d9442299 https://www.encodeproject.org/files/ENCFF960YUK/@@download/ENCFF960YUK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF227RSP bam unfiltered alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKH, ENCFF807MUK 1437416376 ENCODE Processing Pipeline ee19040f87b484674317c233598de55a https://www.encodeproject.org/files/ENCFF227RSP/@@download/ENCFF227RSP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF548BKE bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKJ, ENCFF807MUK 656860782 ENCODE Processing Pipeline 9bce647b573f52055112bf4638dd530e https://www.encodeproject.org/files/ENCFF548BKE/@@download/ENCFF548BKE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF433SCF bam unfiltered alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKJ, ENCFF807MUK 1220220848 ENCODE Processing Pipeline 6be8f8f5aba05e56bca6ce11d0749762 https://www.encodeproject.org/files/ENCFF433SCF/@@download/ENCFF433SCF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF674MDC bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKH, ENCFF807MUK 956914143 ENCODE Processing Pipeline e26f3b49412f2d81544acb1eeeae4299 https://www.encodeproject.org/files/ENCFF674MDC/@@download/ENCFF674MDC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF931LQS bigWig signal p-value ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF960YUK 593742794 ENCODE Processing Pipeline f40b62ec89fe95514e7f6614ae8231ca https://www.encodeproject.org/files/ENCFF931LQS/@@download/ENCFF931LQS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF668NTT bigWig signal p-value ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF444CNM 407929708 ENCODE Processing Pipeline 24cf8a4f4c22f447d30e82a8a31f82ad https://www.encodeproject.org/files/ENCFF668NTT/@@download/ENCFF668NTT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF157CUR bigWig signal p-value ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF444CNM, ENCFF960YUK 571685199 ENCODE Processing Pipeline 8a92cc2ebe5e95ad1d658eaa2fce62f1 https://www.encodeproject.org/files/ENCFF157CUR/@@download/ENCFF157CUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF295UCA bigWig fold change over control ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF960YUK 464786505 ENCODE Processing Pipeline 952be45bed88522998ecb0dbf4eba861 https://www.encodeproject.org/files/ENCFF295UCA/@@download/ENCFF295UCA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF603TXA bigWig fold change over control ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF444CNM 395292550 ENCODE Processing Pipeline c4c2fadafccd68989efd4b6672f09ec6 https://www.encodeproject.org/files/ENCFF603TXA/@@download/ENCFF603TXA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF870IIO bigWig fold change over control ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF444CNM, ENCFF960YUK 703819082 ENCODE Processing Pipeline c81ff3e8a594a96c644a499f57655b0e https://www.encodeproject.org/files/ENCFF870IIO/@@download/ENCFF870IIO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF022SNV bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF444CNM 4437016 ENCODE Processing Pipeline 0f897f0cb4987c1b0e06ff4bdf84b086 https://www.encodeproject.org/files/ENCFF022SNV/@@download/ENCFF022SNV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF913VUR bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF444CNM, ENCFF960YUK 5699876 ENCODE Processing Pipeline de901b0e1c37d35d14152dd68778919d https://www.encodeproject.org/files/ENCFF913VUR/@@download/ENCFF913VUR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF497JGR bigBed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF269KTQ 10994373 ENCODE Processing Pipeline 0e20800172ba827d7dfaabebe08b4e14 https://www.encodeproject.org/files/ENCFF497JGR/@@download/ENCFF497JGR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF269KTQ bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF960YUK 5129578 ENCODE Processing Pipeline 13ba946dcba0093998d955caeaf78f5d https://www.encodeproject.org/files/ENCFF269KTQ/@@download/ENCFF269KTQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF481DHV bigBed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF913VUR 11420820 ENCODE Processing Pipeline 845933f3bbec9b420f6b6ac7b261a578 https://www.encodeproject.org/files/ENCFF481DHV/@@download/ENCFF481DHV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF086CTA bed narrowPeak optimal idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF022SNV, ENCFF269KTQ, ENCFF419RSJ, ENCFF913VUR 414118 ENCODE Processing Pipeline 5f48a9a4de9ebe6d618d9749a3d0bb3f https://www.encodeproject.org/files/ENCFF086CTA/@@download/ENCFF086CTA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF122JIP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF086CTA 723184 ENCODE Processing Pipeline f1133228c77f29b6076ce8654a999f8a https://www.encodeproject.org/files/ENCFF122JIP/@@download/ENCFF122JIP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF042UND bigBed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF022SNV 10701925 ENCODE Processing Pipeline d3807a6b5c31e315808a8464e79df6e5 https://www.encodeproject.org/files/ENCFF042UND/@@download/ENCFF042UND.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF765IVS bed narrowPeak conservative idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF022SNV, ENCFF269KTQ, ENCFF419RSJ, ENCFF913VUR 320984 ENCODE Processing Pipeline b44ff409cb2d3ab6a6119e7bb338d038 https://www.encodeproject.org/files/ENCFF765IVS/@@download/ENCFF765IVS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF776MGC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF765IVS 597851 ENCODE Processing Pipeline 58ffcedfcc12763b392c4d41b1410e02 https://www.encodeproject.org/files/ENCFF776MGC/@@download/ENCFF776MGC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF919AMG bigWig signal p-value ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF548BKE, ENCFF674MDC 565972859 ENCODE Processing Pipeline f6134b4ba91e2fb2afd54a6530d66dc7 https://www.encodeproject.org/files/ENCFF919AMG/@@download/ENCFF919AMG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF600JKB bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF674MDC 5131602 ENCODE Processing Pipeline 5d104bf3b5eaf30497d4e19ebd2ade92 https://www.encodeproject.org/files/ENCFF600JKB/@@download/ENCFF600JKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF323XXE bigBed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF600JKB 10992720 ENCODE Processing Pipeline 59fee4cdf9a24d9efd6817b099603ba3 https://www.encodeproject.org/files/ENCFF323XXE/@@download/ENCFF323XXE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF699KPE bigWig signal p-value ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF548BKE 448349612 ENCODE Processing Pipeline dd21675f8bef3a4757ece9a823d101d8 https://www.encodeproject.org/files/ENCFF699KPE/@@download/ENCFF699KPE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF957SFI bigWig signal p-value ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF674MDC 508581730 ENCODE Processing Pipeline 9e07acab9ec053a0606e1be70c11b295 https://www.encodeproject.org/files/ENCFF957SFI/@@download/ENCFF957SFI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF043UTR bigWig fold change over control ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF674MDC 468017553 ENCODE Processing Pipeline 89a7c4f9b7e9c255471a68a504479999 https://www.encodeproject.org/files/ENCFF043UTR/@@download/ENCFF043UTR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF559GBD bigWig fold change over control ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF548BKE 396633757 ENCODE Processing Pipeline 7f77f5bcbf98bd6d75427b195b0fc4cf https://www.encodeproject.org/files/ENCFF559GBD/@@download/ENCFF559GBD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF915FPS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF267YOX 593460 ENCODE Processing Pipeline 052c7ec43389c0fbe2b5fd49ec4348a3 https://www.encodeproject.org/files/ENCFF915FPS/@@download/ENCFF915FPS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF655UCC bigWig fold change over control ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF548BKE, ENCFF674MDC 693013070 ENCODE Processing Pipeline 0d5c4585247461454972ad1f6285f959 https://www.encodeproject.org/files/ENCFF655UCC/@@download/ENCFF655UCC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF608NEP bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF548BKE 4452905 ENCODE Processing Pipeline 8bd9d8817d8c4732aaaecb92aa78176b https://www.encodeproject.org/files/ENCFF608NEP/@@download/ENCFF608NEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF540FQF bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF548BKE, ENCFF674MDC 5545654 ENCODE Processing Pipeline 29f88c5f530ac780e7819972562ae0ba https://www.encodeproject.org/files/ENCFF540FQF/@@download/ENCFF540FQF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF249BLO bigBed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF608NEP 10725763 ENCODE Processing Pipeline c48bef02e57a36b8346b549abd3436c7 https://www.encodeproject.org/files/ENCFF249BLO/@@download/ENCFF249BLO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF416QBU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140ARE 726144 ENCODE Processing Pipeline be70d366e53359f03197d4121cfb20bf https://www.encodeproject.org/files/ENCFF416QBU/@@download/ENCFF416QBU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF947OQK bigBed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF540FQF 11370395 ENCODE Processing Pipeline 530bbe405d3149416b0363eaa59d9f6d https://www.encodeproject.org/files/ENCFF947OQK/@@download/ENCFF947OQK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF267YOX bed narrowPeak conservative idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF540FQF, ENCFF600JKB, ENCFF608NEP 319136 ENCODE Processing Pipeline f405a8ca93bae079705d3fe2d71cf5c7 https://www.encodeproject.org/files/ENCFF267YOX/@@download/ENCFF267YOX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF140ARE bed narrowPeak optimal idr thresholded peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF540FQF, ENCFF600JKB, ENCFF608NEP 417895 ENCODE Processing Pipeline 361cfa119c4ac6576c821f2a7dfb483f https://www.encodeproject.org/files/ENCFF140ARE/@@download/ENCFF140ARE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000SCK bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000SCQ 520952015 Vishwanath Iyer, UTA bd3fa70c82f88d94c75de76ceeddd591 https://www.encodeproject.org/files/ENCFF000SCK/@@download/ENCFF000SCK.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000SCL bigWig base overlap signal ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 129759195 Vishwanath Iyer, UTA 34df3542a3a540eefc53a062d3c25e08 https://www.encodeproject.org/files/ENCFF000SCL/@@download/ENCFF000SCL.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000SCM bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000SCV 539705374 Vishwanath Iyer, UTA 1c5ae1e8842a492830a129065f4f6643 https://www.encodeproject.org/files/ENCFF000SCM/@@download/ENCFF000SCM.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000SCN bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTX 1998442 Vishwanath Iyer, UTA 39e5c1fbdb82f9d0b6fee4f437a40baa https://www.encodeproject.org/files/ENCFF000SCN/@@download/ENCFF000SCN.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000SCO bigWig signal ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2811237154 Vishwanath Iyer, UTA 84ed7d10bea8e3b18ebb03a9f3c87c2b https://www.encodeproject.org/files/ENCFF000SCO/@@download/ENCFF000SCO.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000SCQ fastq reads ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 608988504 Vishwanath Iyer, UTA 594b3053658ae156d87456abaee6cf6f https://www.encodeproject.org/files/ENCFF000SCQ/@@download/ENCFF000SCQ.fastq.gz Illumina Genome Analyzer /files/ENCFF631TYY/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000SCV fastq reads ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 574743924 Vishwanath Iyer, UTA 74d0f1b86a363f808b9f1b2ce4025a90 https://www.encodeproject.org/files/ENCFF000SCV/@@download/ENCFF000SCV.fastq.gz Illumina Genome Analyzer /files/ENCFF849QBH/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UTX bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1283195 Vishwanath Iyer, UTA 5def847dbb8a583b91d6da68b345c434 https://www.encodeproject.org/files/ENCFF001UTX/@@download/ENCFF001UTX.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002DBR bed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1288633 ENCODE Consortium Analysis Working Group b19f9819dee4cce3c29d258c816d897c https://www.encodeproject.org/files/ENCFF002DBR/@@download/ENCFF002DBR.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF497TLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBR 3107152 ENCODE Consortium 46856e36c95fab1170e967d3d1013f76 https://www.encodeproject.org/files/ENCFF497TLF/@@download/ENCFF497TLF.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF093JKS bam unfiltered alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SCQ, ENCFF643CGH 718359052 ENCODE Processing Pipeline 929e748fbd8474afbd68b765f59250f8 https://www.encodeproject.org/files/ENCFF093JKS/@@download/ENCFF093JKS.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF291HCN bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SCQ, ENCFF643CGH 336124221 ENCODE Processing Pipeline da613b772e26ecca16e74dc8f0c60bfe https://www.encodeproject.org/files/ENCFF291HCN/@@download/ENCFF291HCN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF118APQ bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SCV, ENCFF643CGH 384416668 ENCODE Processing Pipeline 610c80e508d915144b200065061f85d4 https://www.encodeproject.org/files/ENCFF118APQ/@@download/ENCFF118APQ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF767YEK bam unfiltered alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SCV, ENCFF643CGH 711231689 ENCODE Processing Pipeline ec2b4afe73250f1eaa3cf846c6bb4a97 https://www.encodeproject.org/files/ENCFF767YEK/@@download/ENCFF767YEK.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF448PML bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SCV, ENCFF807MUK 384620522 ENCODE Processing Pipeline 3f9d91ceaf53ec05e52ac63ee734ec57 https://www.encodeproject.org/files/ENCFF448PML/@@download/ENCFF448PML.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF847KDB bam unfiltered alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SCQ, ENCFF807MUK 717607254 ENCODE Processing Pipeline 41428b5ef6909e8ed9d2c2adc7105a5a https://www.encodeproject.org/files/ENCFF847KDB/@@download/ENCFF847KDB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF455HQY bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SCQ, ENCFF807MUK 336307595 ENCODE Processing Pipeline 8d652cc202825c46bdcb7efa16540393 https://www.encodeproject.org/files/ENCFF455HQY/@@download/ENCFF455HQY.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF653UQH bam unfiltered alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SCV, ENCFF807MUK 710289577 ENCODE Processing Pipeline f3f6c1c394ab23c6b663739eeb6586e1 https://www.encodeproject.org/files/ENCFF653UQH/@@download/ENCFF653UQH.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF856TVT bigWig signal p-value ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF235OMO, ENCFF455HQY, ENCFF568IYC 291611851 ENCODE Processing Pipeline 0b27a6c0da4aca45f157950c37e08144 https://www.encodeproject.org/files/ENCFF856TVT/@@download/ENCFF856TVT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF407ATY bigWig fold change over control ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF235OMO, ENCFF448PML, ENCFF568IYC 163052885 ENCODE Processing Pipeline fb563073418077dd5b563ad48961dd67 https://www.encodeproject.org/files/ENCFF407ATY/@@download/ENCFF407ATY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF610AGJ bigWig fold change over control ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF235OMO, ENCFF448PML, ENCFF455HQY, ENCFF568IYC 236731603 ENCODE Processing Pipeline 9fcc8689da2bced8fa668ebd78d8f3e8 https://www.encodeproject.org/files/ENCFF610AGJ/@@download/ENCFF610AGJ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF902GLB bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF974JVU 10914089 ENCODE Processing Pipeline 8a8a2046b7194a1391dd6752c23ac26f https://www.encodeproject.org/files/ENCFF902GLB/@@download/ENCFF902GLB.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF226MQR bed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF680MAX, ENCFF705JDO, ENCFF974JVU 777450 ENCODE Processing Pipeline 88ccad5203a63876e6a75b360b38c092 https://www.encodeproject.org/files/ENCFF226MQR/@@download/ENCFF226MQR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF599QCR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF226MQR 1461785 ENCODE Processing Pipeline e4620a983c5a1fd915e2bb98f49139fd https://www.encodeproject.org/files/ENCFF599QCR/@@download/ENCFF599QCR.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF636MGS bigWig signal p-value ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF235OMO, ENCFF448PML, ENCFF455HQY, ENCFF568IYC 397189457 ENCODE Processing Pipeline 4c5f985001b670e29ccbf0ab04400d09 https://www.encodeproject.org/files/ENCFF636MGS/@@download/ENCFF636MGS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF705JDO bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF235OMO, ENCFF448PML, ENCFF568IYC 3000827 ENCODE Processing Pipeline 7b3b2e82e8ac84f8073e7731a6a0bf29 https://www.encodeproject.org/files/ENCFF705JDO/@@download/ENCFF705JDO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF737FGT bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF705JDO 6963197 ENCODE Processing Pipeline 6ee6ef0537228e0d50d1b319b8883599 https://www.encodeproject.org/files/ENCFF737FGT/@@download/ENCFF737FGT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF855MBU bigWig fold change over control ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF235OMO, ENCFF455HQY, ENCFF568IYC 130627707 ENCODE Processing Pipeline 1d13a1feaa8fd0403b54b570a5dc8db1 https://www.encodeproject.org/files/ENCFF855MBU/@@download/ENCFF855MBU.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF680MAX bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF235OMO, ENCFF455HQY, ENCFF568IYC 2565747 ENCODE Processing Pipeline 5809b16b5873fc653245eecdc613075a https://www.encodeproject.org/files/ENCFF680MAX/@@download/ENCFF680MAX.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF423YSW bigWig signal p-value ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF235OMO, ENCFF448PML, ENCFF568IYC 297846451 ENCODE Processing Pipeline c56236b4dfdc65607b8f3b6f611977b1 https://www.encodeproject.org/files/ENCFF423YSW/@@download/ENCFF423YSW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF974JVU bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF235OMO, ENCFF448PML, ENCFF455HQY, ENCFF568IYC 4939618 ENCODE Processing Pipeline 71f478c74543b4cd2bf942e45d6b1bd8 https://www.encodeproject.org/files/ENCFF974JVU/@@download/ENCFF974JVU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF485UAA bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF680MAX 6230618 ENCODE Processing Pipeline b286c73e03968394dc866acd1ff56cb2 https://www.encodeproject.org/files/ENCFF485UAA/@@download/ENCFF485UAA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF013BLA bigWig signal p-value ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF286XEY, ENCFF291HCN, ENCFF595DFF 293237479 ENCODE Processing Pipeline 3291990f853cddd38f41002df6c2c916 https://www.encodeproject.org/files/ENCFF013BLA/@@download/ENCFF013BLA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF623KYU bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF118APQ, ENCFF286XEY, ENCFF595DFF 3001846 ENCODE Processing Pipeline aec321abab1f6da6cf01f2e729814e9d https://www.encodeproject.org/files/ENCFF623KYU/@@download/ENCFF623KYU.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF720RRA bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF301UPP 6111123 ENCODE Processing Pipeline 0feb987f8a249fd9c1e23b0e7903ca65 https://www.encodeproject.org/files/ENCFF720RRA/@@download/ENCFF720RRA.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF586ZQE bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF623KYU 6965032 ENCODE Processing Pipeline fb8cba221c2fed89e3fdc1b06a72f00f https://www.encodeproject.org/files/ENCFF586ZQE/@@download/ENCFF586ZQE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF457DJU bigWig signal p-value ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF118APQ, ENCFF286XEY, ENCFF595DFF 338840732 ENCODE Processing Pipeline c499241575d0beeb8bfc63ff775f1fc9 https://www.encodeproject.org/files/ENCFF457DJU/@@download/ENCFF457DJU.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF318UHZ bigWig fold change over control ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF118APQ, ENCFF286XEY, ENCFF595DFF 162535567 ENCODE Processing Pipeline cfe66e537d15fffe0afc6b5e7b507734 https://www.encodeproject.org/files/ENCFF318UHZ/@@download/ENCFF318UHZ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF465MVV bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF118APQ, ENCFF286XEY, ENCFF291HCN, ENCFF595DFF 4938877 ENCODE Processing Pipeline 31f83800ce9a62e58652152b96e1e3f0 https://www.encodeproject.org/files/ENCFF465MVV/@@download/ENCFF465MVV.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF027LQV bigBed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF465MVV 10943049 ENCODE Processing Pipeline b51f0a72e33e82692a3f144ccebc1d39 https://www.encodeproject.org/files/ENCFF027LQV/@@download/ENCFF027LQV.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF028IIR bed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF301UPP, ENCFF419RSJ, ENCFF465MVV, ENCFF623KYU 772124 ENCODE Processing Pipeline 58794ce11db40e7673cad653a7c2a11f https://www.encodeproject.org/files/ENCFF028IIR/@@download/ENCFF028IIR.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF301UPP bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF286XEY, ENCFF291HCN, ENCFF595DFF 2499007 ENCODE Processing Pipeline 94a169f70206443d609c3b91e5fb6fe9 https://www.encodeproject.org/files/ENCFF301UPP/@@download/ENCFF301UPP.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF771DBH bigWig fold change over control ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF286XEY, ENCFF291HCN, ENCFF595DFF 130069977 ENCODE Processing Pipeline e7769e19147850243d3325eb699d0afb https://www.encodeproject.org/files/ENCFF771DBH/@@download/ENCFF771DBH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF315WFA bigWig signal p-value ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF118APQ, ENCFF286XEY, ENCFF291HCN, ENCFF595DFF 318353672 ENCODE Processing Pipeline c8a010c38d8cd76d049521a56f30f840 https://www.encodeproject.org/files/ENCFF315WFA/@@download/ENCFF315WFA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF261CVM bigWig fold change over control ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF118APQ, ENCFF286XEY, ENCFF291HCN, ENCFF595DFF 238026090 ENCODE Processing Pipeline 6363a59aa9199e5700044a5283c57a67 https://www.encodeproject.org/files/ENCFF261CVM/@@download/ENCFF261CVM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF291YDC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF028IIR 1450590 ENCODE Processing Pipeline 16c0c212aedf4db21d211cdff57db027 https://www.encodeproject.org/files/ENCFF291YDC/@@download/ENCFF291YDC.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF082IYB fastq reads ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF331BQR 1716875798 Michael Snyder, Stanford e1aca34e0f5a57b4d993a17393d4702e https://www.encodeproject.org/files/ENCFF082IYB/@@download/ENCFF082IYB.fastq.gz Illumina HiSeq 2000 /files/ENCFF390IKC/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF331BQR fastq reads ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF082IYB 1686507190 Michael Snyder, Stanford 5f20efaa9a8cbee756fa6d3e1fbbbe52 https://www.encodeproject.org/files/ENCFF331BQR/@@download/ENCFF331BQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF885SDD/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF590WLZ bam alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF082IYB, ENCFF331BQR, ENCFF807MUK 2337842199 ENCODE Processing Pipeline 6a460b4ebc2cdd557b0109867d789e26 https://www.encodeproject.org/files/ENCFF590WLZ/@@download/ENCFF590WLZ.bam hg19 archived mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF545SYX fastq reads ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF972WGI 4340706754 Michael Snyder, Stanford c235564c8f008cde24e5f3f6e09ea6ad https://www.encodeproject.org/files/ENCFF545SYX/@@download/ENCFF545SYX.fastq.gz Illumina HiSeq 2000 /files/ENCFF885SDD/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF972WGI fastq reads ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF545SYX 4397596171 Michael Snyder, Stanford 0ebfdf0e76895eb7ee289f910191a930 https://www.encodeproject.org/files/ENCFF972WGI/@@download/ENCFF972WGI.fastq.gz Illumina HiSeq 2000 /files/ENCFF390IKC/ released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF517UHG bam unfiltered alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF082IYB, ENCFF331BQR, ENCFF545SYX, ENCFF643CGH, ENCFF972WGI 10352133079 ENCODE Processing Pipeline 85eafc7206b95497e7e390df0fcdc123 https://www.encodeproject.org/files/ENCFF517UHG/@@download/ENCFF517UHG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF411THF bam unfiltered alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF082IYB, ENCFF331BQR, ENCFF545SYX, ENCFF807MUK, ENCFF972WGI 10363358266 ENCODE Processing Pipeline cca2e9ee620ab3e01b19a6a317dd8b08 https://www.encodeproject.org/files/ENCFF411THF/@@download/ENCFF411THF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF448TOS bam alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF082IYB, ENCFF331BQR, ENCFF545SYX, ENCFF807MUK, ENCFF972WGI 4314173526 ENCODE Processing Pipeline dffdd65a70554a2af9a258358b7bfa50 https://www.encodeproject.org/files/ENCFF448TOS/@@download/ENCFF448TOS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF036WJL bam alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF082IYB, ENCFF331BQR, ENCFF545SYX, ENCFF643CGH, ENCFF972WGI 4318880241 ENCODE Processing Pipeline 0deb28e3e87c05e904a45e8fcb2951a2 https://www.encodeproject.org/files/ENCFF036WJL/@@download/ENCFF036WJL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF873EXA fastq reads ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 2 ENCFF007HDS 2910093144 Michael Snyder, Stanford 230256efb9103d343104eadac88430ac SRA:SRR6212942 https://www.encodeproject.org/files/ENCFF873EXA/@@download/ENCFF873EXA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released antibody characterized with exemption ENCFF007HDS fastq reads ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 1 100 paired-ended 1 ENCFF873EXA 2848491547 Michael Snyder, Stanford 3f6fe9685d0e95fb05cf5ebdba48b681 SRA:SRR6212942 https://www.encodeproject.org/files/ENCFF007HDS/@@download/ENCFF007HDS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released antibody characterized with exemption ENCFF043MCW fastq reads ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 1 ENCFF520WVU 2357011286 Michael Snyder, Stanford b766d5693bd99650bede659a49e0a928 SRA:SRR6212943 https://www.encodeproject.org/files/ENCFF043MCW/@@download/ENCFF043MCW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released antibody characterized with exemption ENCFF520WVU fastq reads ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 1 100 paired-ended 2 ENCFF043MCW 2416462649 Michael Snyder, Stanford c63c73967f97415755fd89d34e137395 SRA:SRR6212943 https://www.encodeproject.org/files/ENCFF520WVU/@@download/ENCFF520WVU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released antibody characterized with exemption ENCFF702MHE bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 100 ENCFF043MCW, ENCFF520WVU, ENCFF807MUK 4231217857 ENCODE Processing Pipeline 9d4b2abefc11c63a92eefa59b4c65ceb https://www.encodeproject.org/files/ENCFF702MHE/@@download/ENCFF702MHE.bam hg19 released antibody characterized with exemption ENCFF652SID bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 100 ENCFF007HDS, ENCFF807MUK, ENCFF873EXA 4867175121 ENCODE Processing Pipeline a77229da3814d471aef0810cd3a9213e https://www.encodeproject.org/files/ENCFF652SID/@@download/ENCFF652SID.bam hg19 released antibody characterized with exemption ENCFF362IGC bam unfiltered alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 100 ENCFF043MCW, ENCFF520WVU, ENCFF643CGH 5219303894 ENCODE Processing Pipeline 950d50743de1874cf840036232681000 https://www.encodeproject.org/files/ENCFF362IGC/@@download/ENCFF362IGC.bam GRCh38 released antibody characterized with exemption ENCFF283SLJ bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 100 ENCFF043MCW, ENCFF520WVU, ENCFF643CGH 4237264705 ENCODE Processing Pipeline 1c8c1f77c1637fef241c47349b381fb9 https://www.encodeproject.org/files/ENCFF283SLJ/@@download/ENCFF283SLJ.bam GRCh38 released antibody characterized with exemption ENCFF532BVM bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 100 ENCFF007HDS, ENCFF643CGH, ENCFF873EXA 4877994385 ENCODE Processing Pipeline efb8f102591f29526010a5e03796abfd https://www.encodeproject.org/files/ENCFF532BVM/@@download/ENCFF532BVM.bam GRCh38 released antibody characterized with exemption ENCFF413MNX bam unfiltered alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 100 ENCFF007HDS, ENCFF643CGH, ENCFF873EXA 6198099662 ENCODE Processing Pipeline 0400f85245c38394a8eb2775f7dda9c1 https://www.encodeproject.org/files/ENCFF413MNX/@@download/ENCFF413MNX.bam GRCh38 released antibody characterized with exemption ENCFF521UMF bigWig signal p-value ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF227IZS, ENCFF532BVM 971738504 ENCODE Processing Pipeline c3012f466aa698e5f6b8dc741f7afc66 https://www.encodeproject.org/files/ENCFF521UMF/@@download/ENCFF521UMF.bigWig GRCh38 released antibody characterized with exemption ENCFF131PYL bigWig signal p-value ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF283SLJ, ENCFF910IKB 1045783018 ENCODE Processing Pipeline cec5bd3d490e46fe97ecd371573ed7b3 https://www.encodeproject.org/files/ENCFF131PYL/@@download/ENCFF131PYL.bigWig GRCh38 released antibody characterized with exemption ENCFF911EPM bigWig signal p-value ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF227IZS, ENCFF283SLJ, ENCFF532BVM, ENCFF910IKB 1981916536 ENCODE Processing Pipeline bbb3817c0ab4a6692f65e093e10ad805 https://www.encodeproject.org/files/ENCFF911EPM/@@download/ENCFF911EPM.bigWig GRCh38 released antibody characterized with exemption ENCFF679PYB bigWig fold change over control ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF283SLJ, ENCFF910IKB 1211374085 ENCODE Processing Pipeline 2ad08c815c1183fc681262032b6c8100 https://www.encodeproject.org/files/ENCFF679PYB/@@download/ENCFF679PYB.bigWig GRCh38 released antibody characterized with exemption ENCFF686DQR bigWig fold change over control ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF227IZS, ENCFF532BVM 1227456144 ENCODE Processing Pipeline 09a1cc036bec587c83ec0d4db7eafbb8 https://www.encodeproject.org/files/ENCFF686DQR/@@download/ENCFF686DQR.bigWig GRCh38 released antibody characterized with exemption ENCFF007RUV bigWig fold change over control ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF227IZS, ENCFF283SLJ, ENCFF532BVM, ENCFF910IKB 2175659181 ENCODE Processing Pipeline f742585c8523d66477290ae4225ac6e7 https://www.encodeproject.org/files/ENCFF007RUV/@@download/ENCFF007RUV.bigWig GRCh38 released antibody characterized with exemption ENCFF044BDY bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF227IZS, ENCFF532BVM 6471115 ENCODE Processing Pipeline 3caabdf7296c8f602cc28ed8af78873f https://www.encodeproject.org/files/ENCFF044BDY/@@download/ENCFF044BDY.bed.gz GRCh38 released antibody characterized with exemption ENCFF304BDR bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF283SLJ, ENCFF910IKB 6607409 ENCODE Processing Pipeline 29a97c01d23a2cfd53c3cb12a42e343e https://www.encodeproject.org/files/ENCFF304BDR/@@download/ENCFF304BDR.bed.gz GRCh38 released antibody characterized with exemption ENCFF647ZZA bigBed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF304BDR 13391367 ENCODE Processing Pipeline 8c131cd7f0fe95d2baab426a44dbf86f https://www.encodeproject.org/files/ENCFF647ZZA/@@download/ENCFF647ZZA.bigBed GRCh38 released antibody characterized with exemption ENCFF011BON bigBed narrowPeak conservative idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF883AYB 430003 ENCODE Processing Pipeline 36ec053a90aa8affabdf2773d99851b6 https://www.encodeproject.org/files/ENCFF011BON/@@download/ENCFF011BON.bigBed GRCh38 released antibody characterized with exemption ENCFF952JIK bed narrowPeak optimal idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF044BDY, ENCFF223ZVT, ENCFF304BDR, ENCFF419RSJ 294522 ENCODE Processing Pipeline 52ed0332d740140a177782f40e0872bc https://www.encodeproject.org/files/ENCFF952JIK/@@download/ENCFF952JIK.bed.gz GRCh38 released antibody characterized with exemption ENCFF223ZVT bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF227IZS, ENCFF283SLJ, ENCFF532BVM, ENCFF910IKB 7193691 ENCODE Processing Pipeline 0f12f6f00f46c3eaa03f0faacb533b8f https://www.encodeproject.org/files/ENCFF223ZVT/@@download/ENCFF223ZVT.bed.gz GRCh38 released antibody characterized with exemption ENCFF892NQP bigBed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF223ZVT 13382200 ENCODE Processing Pipeline 238d6e0c8cf7459cf1d81341e74cd365 https://www.encodeproject.org/files/ENCFF892NQP/@@download/ENCFF892NQP.bigBed GRCh38 released antibody characterized with exemption ENCFF883AYB bed narrowPeak conservative idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF044BDY, ENCFF223ZVT, ENCFF304BDR, ENCFF419RSJ 196231 ENCODE Processing Pipeline 2566c03c3201c8842a55f9491c3171de https://www.encodeproject.org/files/ENCFF883AYB/@@download/ENCFF883AYB.bed.gz GRCh38 released antibody characterized with exemption ENCFF504YLB bigBed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF044BDY 11279491 ENCODE Processing Pipeline 435bceca3a760aeffe98cb9914f1adc8 https://www.encodeproject.org/files/ENCFF504YLB/@@download/ENCFF504YLB.bigBed GRCh38 released antibody characterized with exemption ENCFF464YDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF952JIK 571991 ENCODE Processing Pipeline 8d564bb085db946b87f42c336fc163f0 https://www.encodeproject.org/files/ENCFF464YDZ/@@download/ENCFF464YDZ.bigBed GRCh38 released antibody characterized with exemption ENCFF337KXR bam unfiltered alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 100 ENCFF043MCW, ENCFF520WVU, ENCFF807MUK 5213491715 ENCODE Processing Pipeline fac28a64b4019707c015b70c91073e4a https://www.encodeproject.org/files/ENCFF337KXR/@@download/ENCFF337KXR.bam hg19 released antibody characterized with exemption ENCFF073LVN bam unfiltered alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 100 ENCFF007HDS, ENCFF807MUK, ENCFF873EXA 6191036573 ENCODE Processing Pipeline d99782c24fae52f6aa5ca0d371ae81b1 https://www.encodeproject.org/files/ENCFF073LVN/@@download/ENCFF073LVN.bam hg19 released antibody characterized with exemption ENCFF802RYP bigWig signal p-value ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF652SID, ENCFF702MHE 1854628757 ENCODE Processing Pipeline 89c0f294d4be0d5905faa83cae898169 https://www.encodeproject.org/files/ENCFF802RYP/@@download/ENCFF802RYP.bigWig hg19 released antibody characterized with exemption ENCFF173GQY bigWig signal p-value ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF702MHE 1219778707 ENCODE Processing Pipeline 2b0fa36401d82fa6e14480f64c8c54dd https://www.encodeproject.org/files/ENCFF173GQY/@@download/ENCFF173GQY.bigWig hg19 released antibody characterized with exemption ENCFF258GEA bigWig fold change over control ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF702MHE 1209097245 ENCODE Processing Pipeline 74f3f9b949a88ae0816e4e4aaccb2604 https://www.encodeproject.org/files/ENCFF258GEA/@@download/ENCFF258GEA.bigWig hg19 released antibody characterized with exemption ENCFF627NVL bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF652SID 6612322 ENCODE Processing Pipeline c94f36c4657842187a9a2e757738c0f2 https://www.encodeproject.org/files/ENCFF627NVL/@@download/ENCFF627NVL.bed.gz hg19 released antibody characterized with exemption ENCFF031PSQ bigBed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF436EEZ 13392280 ENCODE Processing Pipeline b9be4e78b902fadaefbf76abb47d9130 https://www.encodeproject.org/files/ENCFF031PSQ/@@download/ENCFF031PSQ.bigBed hg19 released antibody characterized with exemption ENCFF242IWJ bed narrowPeak optimal idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF436EEZ, ENCFF627NVL, ENCFF777QKF 294099 ENCODE Processing Pipeline a3a1e5f8f633db2836973205f624314e https://www.encodeproject.org/files/ENCFF242IWJ/@@download/ENCFF242IWJ.bed.gz hg19 released antibody characterized with exemption ENCFF436EEZ bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF702MHE 6757441 ENCODE Processing Pipeline 43e8a65d9d33f9e5bf8e0dfaccc72e29 https://www.encodeproject.org/files/ENCFF436EEZ/@@download/ENCFF436EEZ.bed.gz hg19 released antibody characterized with exemption ENCFF351LLM bigWig fold change over control ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF652SID 1221639317 ENCODE Processing Pipeline 3bef9eeaf0a712ea5332b58ccc79505b https://www.encodeproject.org/files/ENCFF351LLM/@@download/ENCFF351LLM.bigWig hg19 released antibody characterized with exemption ENCFF518HBT bigWig fold change over control ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF652SID, ENCFF702MHE 2138107240 ENCODE Processing Pipeline be4eb8c7fafe587d82bea9717ba0efcf https://www.encodeproject.org/files/ENCFF518HBT/@@download/ENCFF518HBT.bigWig hg19 released antibody characterized with exemption ENCFF777QKF bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF652SID, ENCFF702MHE 7214303 ENCODE Processing Pipeline 38df1b0cb28d70f686b34b3b8802e292 https://www.encodeproject.org/files/ENCFF777QKF/@@download/ENCFF777QKF.bed.gz hg19 released antibody characterized with exemption ENCFF346MQD bigBed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF627NVL 11269933 ENCODE Processing Pipeline dc3b32c815d878f7f7a1491bd0e00117 https://www.encodeproject.org/files/ENCFF346MQD/@@download/ENCFF346MQD.bigBed hg19 released antibody characterized with exemption ENCFF096WIO bigBed narrowPeak conservative idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF766PSK 429833 ENCODE Processing Pipeline 55d5e305509939510cd6bc999463c953 https://www.encodeproject.org/files/ENCFF096WIO/@@download/ENCFF096WIO.bigBed hg19 released antibody characterized with exemption ENCFF912KFC bigWig signal p-value ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF652SID 1244350354 ENCODE Processing Pipeline ca37db6af8e14271ce492b0350abb928 https://www.encodeproject.org/files/ENCFF912KFC/@@download/ENCFF912KFC.bigWig hg19 released antibody characterized with exemption ENCFF438ZLU bigBed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF777QKF 13378389 ENCODE Processing Pipeline 6dbc5a487a5ae7f384594053d4ba5bca https://www.encodeproject.org/files/ENCFF438ZLU/@@download/ENCFF438ZLU.bigBed hg19 released antibody characterized with exemption ENCFF766PSK bed narrowPeak conservative idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF001TDO, ENCFF436EEZ, ENCFF627NVL, ENCFF777QKF 198181 ENCODE Processing Pipeline 40eeca92928cbaa227f538cca2e80ea9 https://www.encodeproject.org/files/ENCFF766PSK/@@download/ENCFF766PSK.bed.gz hg19 released antibody characterized with exemption ENCFF502KMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1, 2 ENCFF242IWJ 567810 ENCODE Processing Pipeline 5831d615cabc338ea89ac8a456f374db https://www.encodeproject.org/files/ENCFF502KMQ/@@download/ENCFF502KMQ.bigBed hg19 released antibody characterized with exemption ENCFF323HCC bam unfiltered alignments ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF763EWZ, ENCFF807MUK, ENCFF828DEK 3338916229 ENCODE Processing Pipeline 494f1763cf74a8489b4678596b50d709 https://www.encodeproject.org/files/ENCFF323HCC/@@download/ENCFF323HCC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF763EWZ fastq reads ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF828DEK 1661808334 Michael Snyder, Stanford 46b38f9272e552d04e7b0dbe10f48ad0 SRA:SRR6213510 https://www.encodeproject.org/files/ENCFF763EWZ/@@download/ENCFF763EWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF432BFB/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF828DEK fastq reads ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF763EWZ 1685537224 Michael Snyder, Stanford 95e34b4052aa20c3f69712c40463dd89 SRA:SRR6213510 https://www.encodeproject.org/files/ENCFF828DEK/@@download/ENCFF828DEK.fastq.gz Illumina HiSeq 2000 /files/ENCFF231JUU/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF187ZIE bam alignments ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF763EWZ, ENCFF807MUK, ENCFF828DEK 2005657106 ENCODE Processing Pipeline 008a658604e7fdf31adfc80edf139994 https://www.encodeproject.org/files/ENCFF187ZIE/@@download/ENCFF187ZIE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF740ULF bam alignments ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF643CGH, ENCFF763EWZ, ENCFF828DEK 2007246811 ENCODE Processing Pipeline f6023e9a4776494f95faa165206eb3e2 https://www.encodeproject.org/files/ENCFF740ULF/@@download/ENCFF740ULF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF814GOC bam unfiltered alignments ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF643CGH, ENCFF763EWZ, ENCFF828DEK 3338256607 ENCODE Processing Pipeline fe516957af9443104881fbeb1d5e83b6 https://www.encodeproject.org/files/ENCFF814GOC/@@download/ENCFF814GOC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF532PJX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF977ZBK 352804 ENCODE Processing Pipeline 263f8d7127dfe766569b580b1eca4cae https://www.encodeproject.org/files/ENCFF532PJX/@@download/ENCFF532PJX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF830TUK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF532PJX 740740 ENCODE Processing Pipeline a3c078393ce51e857ae8ef9b740feb67 https://www.encodeproject.org/files/ENCFF830TUK/@@download/ENCFF830TUK.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF977ZBK bed narrowPeak peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF187ZIE, ENCFF238ZIF 5415756 ENCODE Processing Pipeline 1f2e2e6ff176fedfed0ff0cba1bed2e3 https://www.encodeproject.org/files/ENCFF977ZBK/@@download/ENCFF977ZBK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF125ALD bigBed narrowPeak peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF977ZBK 13433688 ENCODE Processing Pipeline aad3938d210c915ea87097533ba6d26d https://www.encodeproject.org/files/ENCFF125ALD/@@download/ENCFF125ALD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF691GCR bigWig signal p-value ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF187ZIE, ENCFF238ZIF 742695536 ENCODE Processing Pipeline 37787677eadcbf3dfb4495dfe5cb387e https://www.encodeproject.org/files/ENCFF691GCR/@@download/ENCFF691GCR.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF851WEB bigWig fold change over control ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF187ZIE, ENCFF238ZIF 604177674 ENCODE Processing Pipeline 934c7dac3cb3f1c8263e9ace865f10a6 https://www.encodeproject.org/files/ENCFF851WEB/@@download/ENCFF851WEB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF388DPI bigWig fold change over control ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF502XEU, ENCFF740ULF 608878105 ENCODE Processing Pipeline e6dd713a7c2835301203d03690d7bec9 https://www.encodeproject.org/files/ENCFF388DPI/@@download/ENCFF388DPI.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF015AQY bed narrowPeak peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF502XEU, ENCFF740ULF 5398517 ENCODE Processing Pipeline b8723f5614c61d2414ef01c7b9469ecc https://www.encodeproject.org/files/ENCFF015AQY/@@download/ENCFF015AQY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF835VAP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF015AQY, ENCFF419RSJ 343366 ENCODE Processing Pipeline f89a5481c56ae978d8e36e5dfda079ff https://www.encodeproject.org/files/ENCFF835VAP/@@download/ENCFF835VAP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF720HKA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF835VAP 731107 ENCODE Processing Pipeline 242aed2a70f34efbf0d06dac48ea32b8 https://www.encodeproject.org/files/ENCFF720HKA/@@download/ENCFF720HKA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF239SGR bigBed narrowPeak peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF015AQY 11264371 ENCODE Processing Pipeline b9626446f3f22b11f985d6051de629a0 https://www.encodeproject.org/files/ENCFF239SGR/@@download/ENCFF239SGR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF954MIX bigWig signal p-value ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF502XEU, ENCFF740ULF 692992758 ENCODE Processing Pipeline 9b48bcd444aa1e88fdc81da6d2521787 https://www.encodeproject.org/files/ENCFF954MIX/@@download/ENCFF954MIX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF251XXO fastq reads ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 915980591 Xiang-Dong Fu, UCSD 2b0a56f195cba133179cdd50f8820758 https://www.encodeproject.org/files/ENCFF251XXO/@@download/ENCFF251XXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF061XKR/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF724GZW fastq reads ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 827287030 Xiang-Dong Fu, UCSD 79933370b5a327dfd48e6ce55f5c92cb https://www.encodeproject.org/files/ENCFF724GZW/@@download/ENCFF724GZW.fastq.gz Illumina HiSeq 2000 /files/ENCFF605JOL/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF209ZGU bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF724GZW, ENCFF807MUK 529683442 ENCODE Processing Pipeline 76c14e99fd81bf4d47a29fe91895ed79 https://www.encodeproject.org/files/ENCFF209ZGU/@@download/ENCFF209ZGU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF512OQM bam unfiltered alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF251XXO, ENCFF807MUK 1111767254 ENCODE Processing Pipeline 30e6d7499f6971b3a4fb842e1ab9c747 https://www.encodeproject.org/files/ENCFF512OQM/@@download/ENCFF512OQM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF794BAU bam unfiltered alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF724GZW, ENCFF807MUK 1017024846 ENCODE Processing Pipeline 0eff4b1ff5afecc3505039b00faa5e19 https://www.encodeproject.org/files/ENCFF794BAU/@@download/ENCFF794BAU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF637GAD bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF724GZW 528757694 ENCODE Processing Pipeline d5c7822819bafe93278a550c7f2d03d8 https://www.encodeproject.org/files/ENCFF637GAD/@@download/ENCFF637GAD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF907AZS bam unfiltered alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF724GZW 1018627430 ENCODE Processing Pipeline b7946a5cf7c8b59d4de4a5133ef8ac53 https://www.encodeproject.org/files/ENCFF907AZS/@@download/ENCFF907AZS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF426UGN bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF251XXO, ENCFF807MUK 554783135 ENCODE Processing Pipeline db49b93e4ca2fd74ff47707c3df229e3 https://www.encodeproject.org/files/ENCFF426UGN/@@download/ENCFF426UGN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF741WVA bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF251XXO, ENCFF643CGH 553854464 ENCODE Processing Pipeline 140fdcc3ba66ecde6aee8090949d1bda https://www.encodeproject.org/files/ENCFF741WVA/@@download/ENCFF741WVA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF035KVZ bam unfiltered alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF251XXO, ENCFF643CGH 1113600753 ENCODE Processing Pipeline 9034f1047fbcd88c98bcb6cf16f54c02 https://www.encodeproject.org/files/ENCFF035KVZ/@@download/ENCFF035KVZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF103EYP bigWig signal p-value ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF209ZGU, ENCFF462KWM 491507834 ENCODE Processing Pipeline 253797f77011fe88dd0de072dec1deb9 https://www.encodeproject.org/files/ENCFF103EYP/@@download/ENCFF103EYP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF313NNG bigWig signal p-value ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF209ZGU, ENCFF426UGN, ENCFF462KWM 880628330 ENCODE Processing Pipeline 8e8878ed82af48c30af39f3ac2091ea6 https://www.encodeproject.org/files/ENCFF313NNG/@@download/ENCFF313NNG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF245KXX bigWig fold change over control ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF426UGN 380096732 ENCODE Processing Pipeline 2648981cee9c67330c2dd08f5e0f1893 https://www.encodeproject.org/files/ENCFF245KXX/@@download/ENCFF245KXX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF385YDL bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF209ZGU, ENCFF462KWM 6777882 ENCODE Processing Pipeline 648fb5db74aa102fefcccf4370bf6e41 https://www.encodeproject.org/files/ENCFF385YDL/@@download/ENCFF385YDL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF141NVO bigBed narrowPeak optimal idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF622VSV 1701652 ENCODE Processing Pipeline 1cc12ea668ecc46435a9831013d9d7fb https://www.encodeproject.org/files/ENCFF141NVO/@@download/ENCFF141NVO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF101OYM bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF426UGN 6659386 ENCODE Processing Pipeline 33a6e7410d7102f4213559892d77db7d https://www.encodeproject.org/files/ENCFF101OYM/@@download/ENCFF101OYM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF295ZNT bigBed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF385YDL 11869500 ENCODE Processing Pipeline db2109f5173ab61d332d1457dbd27069 https://www.encodeproject.org/files/ENCFF295ZNT/@@download/ENCFF295ZNT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF401ZDI bigBed narrowPeak conservative idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF848FVO 1671467 ENCODE Processing Pipeline 8bfa9abb93d4ff3d07109fa87472200f https://www.encodeproject.org/files/ENCFF401ZDI/@@download/ENCFF401ZDI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF651CWU bigWig signal p-value ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF426UGN 531843822 ENCODE Processing Pipeline 2b172c72628f0380be6bf9f603eb938c https://www.encodeproject.org/files/ENCFF651CWU/@@download/ENCFF651CWU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF848FVO bed narrowPeak conservative idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF101OYM, ENCFF385YDL, ENCFF762PXH 793254 ENCODE Processing Pipeline d0ad0b18e939eac5ec99848183b82717 https://www.encodeproject.org/files/ENCFF848FVO/@@download/ENCFF848FVO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF622VSV bed narrowPeak optimal idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF101OYM, ENCFF385YDL, ENCFF762PXH 811866 ENCODE Processing Pipeline 626d88fc07d901e090d226bfed42f811 https://www.encodeproject.org/files/ENCFF622VSV/@@download/ENCFF622VSV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF290KWI bigBed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF762PXH 11584461 ENCODE Processing Pipeline 540fbe32c394f72399081da36f5c9ab8 https://www.encodeproject.org/files/ENCFF290KWI/@@download/ENCFF290KWI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF504UCS bigWig fold change over control ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF209ZGU, ENCFF462KWM 366778162 ENCODE Processing Pipeline b430edae8771e54374857b47f339745c https://www.encodeproject.org/files/ENCFF504UCS/@@download/ENCFF504UCS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF010SVM bigWig fold change over control ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF209ZGU, ENCFF426UGN, ENCFF462KWM 858650135 ENCODE Processing Pipeline 56ceaeee8acc9511f6d4b7d664a6baff https://www.encodeproject.org/files/ENCFF010SVM/@@download/ENCFF010SVM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF762PXH bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF209ZGU, ENCFF426UGN, ENCFF462KWM 7051658 ENCODE Processing Pipeline 3b0f2e679f6ea2c92d62ad0cf0077611 https://www.encodeproject.org/files/ENCFF762PXH/@@download/ENCFF762PXH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF231FLV bigBed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF101OYM 11734594 ENCODE Processing Pipeline dab20eb67037f5c634fa290abcb61e06 https://www.encodeproject.org/files/ENCFF231FLV/@@download/ENCFF231FLV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF443ZCQ bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF741WVA, ENCFF874GUL 6657825 ENCODE Processing Pipeline 937c1f37ee0f53ca24004586635bbb01 https://www.encodeproject.org/files/ENCFF443ZCQ/@@download/ENCFF443ZCQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF780SHQ bigBed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF201NAO 11837358 ENCODE Processing Pipeline 37bccab8e6271a78bbac407cb0e66967 https://www.encodeproject.org/files/ENCFF780SHQ/@@download/ENCFF780SHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF333DOX bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF637GAD, ENCFF719EDQ, ENCFF741WVA, ENCFF874GUL 7053159 ENCODE Processing Pipeline 6cea0887192bf3ff255568303a1374d6 https://www.encodeproject.org/files/ENCFF333DOX/@@download/ENCFF333DOX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF420CJD bigBed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF443ZCQ 11743341 ENCODE Processing Pipeline ed7b993f222559ba4060c6e04a167dd8 https://www.encodeproject.org/files/ENCFF420CJD/@@download/ENCFF420CJD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF465FII bed narrowPeak optimal idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF201NAO, ENCFF333DOX, ENCFF419RSJ, ENCFF443ZCQ 809788 ENCODE Processing Pipeline c060f841fc7218634ad2a71558a8c861 https://www.encodeproject.org/files/ENCFF465FII/@@download/ENCFF465FII.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF309WTZ bigWig signal p-value ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF637GAD, ENCFF719EDQ, ENCFF741WVA, ENCFF874GUL 921219978 ENCODE Processing Pipeline 8f019ff46fedce0520a61c88e116d447 https://www.encodeproject.org/files/ENCFF309WTZ/@@download/ENCFF309WTZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF083TUJ bigBed narrowPeak conservative idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF382ZIG 1672873 ENCODE Processing Pipeline 9e4b7b6ce05b476234726092f11f838f https://www.encodeproject.org/files/ENCFF083TUJ/@@download/ENCFF083TUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF773YDL bigBed narrowPeak optimal idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF465FII 1700064 ENCODE Processing Pipeline 441b7d4e87f2486bb4f5482cca6957f0 https://www.encodeproject.org/files/ENCFF773YDL/@@download/ENCFF773YDL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF215SIW bigWig fold change over control ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF637GAD, ENCFF719EDQ 366381498 ENCODE Processing Pipeline 119dbce8f54576ce4626ec118ad22fc9 https://www.encodeproject.org/files/ENCFF215SIW/@@download/ENCFF215SIW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF768GGW bigWig fold change over control ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF741WVA, ENCFF874GUL 380820697 ENCODE Processing Pipeline 9105c2e68f1877cca049191f3c26d301 https://www.encodeproject.org/files/ENCFF768GGW/@@download/ENCFF768GGW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF665ADO bigBed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF333DOX 11590973 ENCODE Processing Pipeline 07f3fca87e62152d4ea0ce695535083f https://www.encodeproject.org/files/ENCFF665ADO/@@download/ENCFF665ADO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF535XIF bigWig signal p-value ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF637GAD, ENCFF719EDQ 510977564 ENCODE Processing Pipeline 2f623fe956b2ad48806fc879715f8a58 https://www.encodeproject.org/files/ENCFF535XIF/@@download/ENCFF535XIF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF450MDW bigWig signal p-value ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF741WVA, ENCFF874GUL 513283064 ENCODE Processing Pipeline 797c015201b9192fed956f1098f478d8 https://www.encodeproject.org/files/ENCFF450MDW/@@download/ENCFF450MDW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF808CTN bigWig fold change over control ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF637GAD, ENCFF719EDQ, ENCFF741WVA, ENCFF874GUL 844888643 ENCODE Processing Pipeline 790adc65b1b41be39d2fe63a8ac21c43 https://www.encodeproject.org/files/ENCFF808CTN/@@download/ENCFF808CTN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF201NAO bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF637GAD, ENCFF719EDQ 6745248 ENCODE Processing Pipeline ce3f2402590622f8ec20857c917a1482 https://www.encodeproject.org/files/ENCFF201NAO/@@download/ENCFF201NAO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF382ZIG bed narrowPeak conservative idr thresholded peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF201NAO, ENCFF333DOX, ENCFF419RSJ, ENCFF443ZCQ 794400 ENCODE Processing Pipeline 891efe8a77964ff01a55d52a44cc7fdc https://www.encodeproject.org/files/ENCFF382ZIG/@@download/ENCFF382ZIG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF000NYS bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NZH 852373336 Richard Myers, HAIB 07e7eb98afe186496a387c34b4699b9a https://www.encodeproject.org/files/ENCFF000NYS/@@download/ENCFF000NYS.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NYT bigBed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXW 480299 Richard Myers, HAIB cc9f378c2c3af70f19f99378f8bccb50 https://www.encodeproject.org/files/ENCFF000NYT/@@download/ENCFF000NYT.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NYU bigBed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXX 305845 Richard Myers, HAIB 84599874511916d9ca9e86da43e1c060 https://www.encodeproject.org/files/ENCFF000NYU/@@download/ENCFF000NYU.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NYV bigWig raw signal ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 25608562 Richard Myers, HAIB 10c4ca4024c96d05a7e4d81f0b886008 https://www.encodeproject.org/files/ENCFF000NYV/@@download/ENCFF000NYV.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF000NYW bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZG 1341600814 Richard Myers, HAIB 6a14de4571be25a5eb6dffbb8469b43d https://www.encodeproject.org/files/ENCFF000NYW/@@download/ENCFF000NYW.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NYX bigWig raw signal ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 9992559 Richard Myers, HAIB a05c1182b3269efa5353f54d7238e810 https://www.encodeproject.org/files/ENCFF000NYX/@@download/ENCFF000NYX.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF000NZG fastq reads ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 754739900 Richard Myers, HAIB a18d83a560f04bb18b4ab5ea2caecc60 https://www.encodeproject.org/files/ENCFF000NZG/@@download/ENCFF000NZG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NZH fastq reads ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 558811486 Richard Myers, HAIB aa9f424a3feae1d620194ec0cb465151 https://www.encodeproject.org/files/ENCFF000NZH/@@download/ENCFF000NZH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001TXW bed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 240803 Richard Myers, HAIB f24789c55ae60cf5179f98e5964a4fd1 https://www.encodeproject.org/files/ENCFF001TXW/@@download/ENCFF001TXW.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001TXX bed broadPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 126216 Richard Myers, HAIB 0786f37aa6f0692d2aaef5817f7e4054 https://www.encodeproject.org/files/ENCFF001TXX/@@download/ENCFF001TXX.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF002CHI bed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 115128 ENCODE Consortium Analysis Working Group 0258dfcc5a886fb896f9f4e633e299dd https://www.encodeproject.org/files/ENCFF002CHI/@@download/ENCFF002CHI.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF845LPS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHI 319108 ENCODE Consortium c3b3da65ad51e994e40795209e4612c0 https://www.encodeproject.org/files/ENCFF845LPS/@@download/ENCFF845LPS.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF699DCV bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF643CGH 685221658 ENCODE Processing Pipeline 53d4d30f6b1baa581cb2d730952d29f6 https://www.encodeproject.org/files/ENCFF699DCV/@@download/ENCFF699DCV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF238NNG bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF643CGH 310275520 ENCODE Processing Pipeline 7599dcd4abaf09cb6ffedc43703a36c7 https://www.encodeproject.org/files/ENCFF238NNG/@@download/ENCFF238NNG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF465HGT bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF643CGH 994115228 ENCODE Processing Pipeline a3e89d80ab8ae55bec4762011d9d61bf https://www.encodeproject.org/files/ENCFF465HGT/@@download/ENCFF465HGT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF725DLZ bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF643CGH 599962686 ENCODE Processing Pipeline 5f82c1cb2947b17272ec39b3c5bbaead https://www.encodeproject.org/files/ENCFF725DLZ/@@download/ENCFF725DLZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF369KBK bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF807MUK 682953244 ENCODE Processing Pipeline 4322108bb08030026dd22b8c28aee2aa https://www.encodeproject.org/files/ENCFF369KBK/@@download/ENCFF369KBK.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF187YDX bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF807MUK 309178351 ENCODE Processing Pipeline 0c58dd0be7608af3d9c84b4dd1f1ba83 https://www.encodeproject.org/files/ENCFF187YDX/@@download/ENCFF187YDX.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF234DXO bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF807MUK 597556285 ENCODE Processing Pipeline 0d0d50c13ac18ccee1fbf4878e8be6b7 https://www.encodeproject.org/files/ENCFF234DXO/@@download/ENCFF234DXO.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF431HRP bam unfiltered alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF807MUK 990901497 ENCODE Processing Pipeline 9f7b5e1bb883c4fac30a6a6ddf7424ab https://www.encodeproject.org/files/ENCFF431HRP/@@download/ENCFF431HRP.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF174NFH bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF725DLZ 406639379 ENCODE Processing Pipeline bf6ddeae2978cfe43bbb307e574a477e https://www.encodeproject.org/files/ENCFF174NFH/@@download/ENCFF174NFH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF619YLP bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF238NNG, ENCFF438FFV 360626772 ENCODE Processing Pipeline 62fd7cafe0bc99068264162e1397bebb https://www.encodeproject.org/files/ENCFF619YLP/@@download/ENCFF619YLP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF826BKR bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238NNG, ENCFF438FFV, ENCFF562HPN, ENCFF725DLZ 734765993 ENCODE Processing Pipeline 45a7696aa832d3bf5a6d2752c8fdc346 https://www.encodeproject.org/files/ENCFF826BKR/@@download/ENCFF826BKR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF296HRK bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF725DLZ 279053604 ENCODE Processing Pipeline 1aa2900e8a4e7c79af452f130319519e https://www.encodeproject.org/files/ENCFF296HRK/@@download/ENCFF296HRK.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF399SZY bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238NNG, ENCFF438FFV, ENCFF562HPN, ENCFF725DLZ 500378476 ENCODE Processing Pipeline cd33d6d28a772dd9f73ad3a6581fc840 https://www.encodeproject.org/files/ENCFF399SZY/@@download/ENCFF399SZY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF464GYA bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF238NNG, ENCFF438FFV 128337601 ENCODE Processing Pipeline 582e14c948126fd07fb446d6f865bf84 https://www.encodeproject.org/files/ENCFF464GYA/@@download/ENCFF464GYA.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF899RAJ bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF725DLZ 4360194 ENCODE Processing Pipeline 7219bebfbd849aed818cd746acdedf15 https://www.encodeproject.org/files/ENCFF899RAJ/@@download/ENCFF899RAJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF404QHU bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF238NNG, ENCFF438FFV 1149531 ENCODE Processing Pipeline 3124f38680d3e4bbe13b65f769b59656 https://www.encodeproject.org/files/ENCFF404QHU/@@download/ENCFF404QHU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF270CFW bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404QHU 2129781 ENCODE Processing Pipeline 1580bc3fe1c243f50b7c708cc2328303 https://www.encodeproject.org/files/ENCFF270CFW/@@download/ENCFF270CFW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF486GIV bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238NNG, ENCFF438FFV, ENCFF562HPN, ENCFF725DLZ 5175861 ENCODE Processing Pipeline 76ccc9fd1954871ffa96f188d6c91246 https://www.encodeproject.org/files/ENCFF486GIV/@@download/ENCFF486GIV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF204BQF bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF899RAJ 10686924 ENCODE Processing Pipeline 6b8c7b7e572f12ef62ed82b072f63048 https://www.encodeproject.org/files/ENCFF204BQF/@@download/ENCFF204BQF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF723KBR bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF486GIV 11309209 ENCODE Processing Pipeline d8243b96aa2324c4072438a1f7da30af https://www.encodeproject.org/files/ENCFF723KBR/@@download/ENCFF723KBR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF510FUM bed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QHU, ENCFF419RSJ, ENCFF486GIV, ENCFF899RAJ 87078 ENCODE Processing Pipeline e5671af475cef3c62bdaba84b37c57e1 https://www.encodeproject.org/files/ENCFF510FUM/@@download/ENCFF510FUM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF803HGS bed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF404QHU, ENCFF419RSJ, ENCFF486GIV, ENCFF899RAJ 39648 ENCODE Processing Pipeline f65e486ab2cb208ecf0b8478980f1e3b https://www.encodeproject.org/files/ENCFF803HGS/@@download/ENCFF803HGS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF155DSW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF510FUM 228448 ENCODE Processing Pipeline 2da29a38a1d9d0afebf60481cf264297 https://www.encodeproject.org/files/ENCFF155DSW/@@download/ENCFF155DSW.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF208HOU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF803HGS 125694 ENCODE Processing Pipeline 63caac3fdacbe8828580996dc6de6b0c https://www.encodeproject.org/files/ENCFF208HOU/@@download/ENCFF208HOU.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF272WSV bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 416245056 ENCODE Processing Pipeline 21e4247a228a246d46e69953d0d0dc04 https://www.encodeproject.org/files/ENCFF272WSV/@@download/ENCFF272WSV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF043YVW bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 273094729 ENCODE Processing Pipeline 1b205bfc3a830a237b012527b025a841 https://www.encodeproject.org/files/ENCFF043YVW/@@download/ENCFF043YVW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF915ENV bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 128303600 ENCODE Processing Pipeline 0ffb5cd075b33e77178d8ef88aac3467 https://www.encodeproject.org/files/ENCFF915ENV/@@download/ENCFF915ENV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF221GCA bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187YDX, ENCFF234DXO, ENCFF837IOW, ENCFF958RTR 738647040 ENCODE Processing Pipeline 76e87607d90d4b61c513a00acf930159 https://www.encodeproject.org/files/ENCFF221GCA/@@download/ENCFF221GCA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF508TEV bigWig fold change over control ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187YDX, ENCFF234DXO, ENCFF837IOW, ENCFF958RTR 500455280 ENCODE Processing Pipeline ce5b3356bee93b0bc6d36164c0911f29 https://www.encodeproject.org/files/ENCFF508TEV/@@download/ENCFF508TEV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF833QJP bigWig signal p-value ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 419811524 ENCODE Processing Pipeline cdd14e2d2488e6a538e27d1b2661bbba https://www.encodeproject.org/files/ENCFF833QJP/@@download/ENCFF833QJP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF043OJL bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187YDX, ENCFF234DXO, ENCFF837IOW, ENCFF958RTR 5125639 ENCODE Processing Pipeline 7621f6dca5edd01ed58a7a5286efedc2 https://www.encodeproject.org/files/ENCFF043OJL/@@download/ENCFF043OJL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF901YUN bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 4351005 ENCODE Processing Pipeline b23728d0a6808390a3eddef6eaf3e13b https://www.encodeproject.org/files/ENCFF901YUN/@@download/ENCFF901YUN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF482HUC bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF804LKJ 2215091 ENCODE Processing Pipeline 32cd761c5693f0d48f8260b181e69bab https://www.encodeproject.org/files/ENCFF482HUC/@@download/ENCFF482HUC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF578CRG bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF043OJL 11270136 ENCODE Processing Pipeline c4fa580eba4304705e0a508b11c9c256 https://www.encodeproject.org/files/ENCFF578CRG/@@download/ENCFF578CRG.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF216WND bed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF043OJL, ENCFF804LKJ, ENCFF901YUN 34254 ENCODE Processing Pipeline 8c2d2bb0c6ff2617ed0cdf02a7b591d9 https://www.encodeproject.org/files/ENCFF216WND/@@download/ENCFF216WND.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF804LKJ bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 1207971 ENCODE Processing Pipeline ba9d4821757dea35896c8804bb35174c https://www.encodeproject.org/files/ENCFF804LKJ/@@download/ENCFF804LKJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF364FXC bigBed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF901YUN 10692430 ENCODE Processing Pipeline 4929ffb52f0f2558b6d9c2d394047476 https://www.encodeproject.org/files/ENCFF364FXC/@@download/ENCFF364FXC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF624LJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF302XID 175113 ENCODE Processing Pipeline eabf439bf11372c9feb74bd58525ecb7 https://www.encodeproject.org/files/ENCFF624LJQ/@@download/ENCFF624LJQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF425DVR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF216WND 97674 ENCODE Processing Pipeline dc7639db52453b49eed01d698b2ef43b https://www.encodeproject.org/files/ENCFF425DVR/@@download/ENCFF425DVR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF302XID bed narrowPeak optimal idr thresholded peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF043OJL, ENCFF804LKJ, ENCFF901YUN 74253 ENCODE Processing Pipeline 86772eabea3fb88597077cba207fc9b3 https://www.encodeproject.org/files/ENCFF302XID/@@download/ENCFF302XID.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF062BQQ fastq reads ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 1 76 single-ended 720289977 Bradley Bernstein, Broad 6a8aa6f19dffce3efb1bb5cd9cd4fec7 SRA:SRR5832853 https://www.encodeproject.org/files/ENCFF062BQQ/@@download/ENCFF062BQQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF920WNX/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF319DTT fastq reads ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 1 76 single-ended 6236008958 Bradley Bernstein, Broad 2637a3a792d5c98cb9c98628f0feadba SRA:SRR5832854 https://www.encodeproject.org/files/ENCFF319DTT/@@download/ENCFF319DTT.fastq.gz Illumina HiSeq 2500 /files/ENCFF214KMN/, /files/ENCFF343EVP/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF842USN bam unfiltered alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF062BQQ, ENCFF643CGH 897994240 ENCODE Processing Pipeline 9dc538c81814999d6e73fb5475ed2519 https://www.encodeproject.org/files/ENCFF842USN/@@download/ENCFF842USN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF685SJB bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF062BQQ, ENCFF643CGH 759159862 ENCODE Processing Pipeline 5bad32810afaaf8d00bcd7c6e6d7f716 https://www.encodeproject.org/files/ENCFF685SJB/@@download/ENCFF685SJB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF761DRI bam unfiltered alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF319DTT, ENCFF643CGH 6497718691 ENCODE Processing Pipeline 9ccc16244825f31c182e71773fdc8146 https://www.encodeproject.org/files/ENCFF761DRI/@@download/ENCFF761DRI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF961XMG bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF319DTT, ENCFF643CGH 4265049255 ENCODE Processing Pipeline e27a9e3cddddd20de857f448d9c85c7a https://www.encodeproject.org/files/ENCFF961XMG/@@download/ENCFF961XMG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF070MLE bam unfiltered alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF062BQQ, ENCFF807MUK 895180334 ENCODE Processing Pipeline 542a51ad4c72daa966f20f48b79289ba https://www.encodeproject.org/files/ENCFF070MLE/@@download/ENCFF070MLE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF262VNS bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF062BQQ, ENCFF807MUK 758457044 ENCODE Processing Pipeline 6f1f783fddd6e9691777a40a6afa9461 https://www.encodeproject.org/files/ENCFF262VNS/@@download/ENCFF262VNS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF958IUX bam unfiltered alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF319DTT, ENCFF807MUK 6487686722 ENCODE Processing Pipeline 32731addea16d01b44fcf6a57603d7ed https://www.encodeproject.org/files/ENCFF958IUX/@@download/ENCFF958IUX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF156ZIB bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF319DTT, ENCFF807MUK 4259203035 ENCODE Processing Pipeline aaf7ccd508c7af829a1d10241c5810ff https://www.encodeproject.org/files/ENCFF156ZIB/@@download/ENCFF156ZIB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF292XBN bigWig signal p-value ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF685SJB, ENCFF714AMB, ENCFF961XMG 1600621659 ENCODE Processing Pipeline 9bad948ac615523d0fb61ff891b81f3c https://www.encodeproject.org/files/ENCFF292XBN/@@download/ENCFF292XBN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF430HAA bigWig signal p-value ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF714AMB, ENCFF961XMG 1671907386 ENCODE Processing Pipeline 8a957200bc190e13e76f72aab2d79e83 https://www.encodeproject.org/files/ENCFF430HAA/@@download/ENCFF430HAA.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF372GCJ bigWig signal p-value ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF685SJB, ENCFF714AMB 990514717 ENCODE Processing Pipeline 6af9c6b06dc581c9b4c39d437f9abe37 https://www.encodeproject.org/files/ENCFF372GCJ/@@download/ENCFF372GCJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF041LRW bigWig fold change over control ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF714AMB, ENCFF961XMG 1650879210 ENCODE Processing Pipeline f90a1b10ffcc4b2f19d2d2c0215a96dd https://www.encodeproject.org/files/ENCFF041LRW/@@download/ENCFF041LRW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF244ZKX bigWig fold change over control ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF685SJB, ENCFF714AMB 769693628 ENCODE Processing Pipeline bd2bf05425962f81053d5448850a4235 https://www.encodeproject.org/files/ENCFF244ZKX/@@download/ENCFF244ZKX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF454PBC bigWig fold change over control ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF685SJB, ENCFF714AMB, ENCFF961XMG 1834675369 ENCODE Processing Pipeline aa45107f6ac88f48545b37424bc0b4b2 https://www.encodeproject.org/files/ENCFF454PBC/@@download/ENCFF454PBC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF156AOR bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF572IKT, ENCFF685SJB, ENCFF714AMB 5978438 ENCODE Processing Pipeline 6f5b9ca662a35ca3e674db7ddea3050d https://www.encodeproject.org/files/ENCFF156AOR/@@download/ENCFF156AOR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF283OIG bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF572IKT, ENCFF714AMB, ENCFF961XMG 6840761 ENCODE Processing Pipeline 2fdd90bb951ac3f694ae1f42b32f2ee4 https://www.encodeproject.org/files/ENCFF283OIG/@@download/ENCFF283OIG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF415APO bigBed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF156AOR 13375565 ENCODE Processing Pipeline 57861d00e7edffd818f68c8a86f2d74b https://www.encodeproject.org/files/ENCFF415APO/@@download/ENCFF415APO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF109UAD bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF572IKT, ENCFF685SJB, ENCFF714AMB, ENCFF961XMG 7070105 ENCODE Processing Pipeline 7b8937fd91190de3d1925a5cd43f2abd https://www.encodeproject.org/files/ENCFF109UAD/@@download/ENCFF109UAD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF790IHR bigBed narrowPeak conservative idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF714DUV 714372 ENCODE Processing Pipeline 451aed3cb0588382988a84a7df0898c0 https://www.encodeproject.org/files/ENCFF790IHR/@@download/ENCFF790IHR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF851TVF bigBed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF283OIG 13497157 ENCODE Processing Pipeline 842f786fa1b153cfa206e8abcabe0544 https://www.encodeproject.org/files/ENCFF851TVF/@@download/ENCFF851TVF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF421HSY bigBed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF109UAD 13442035 ENCODE Processing Pipeline b00e200157b0885b4019cb1486f70e8c https://www.encodeproject.org/files/ENCFF421HSY/@@download/ENCFF421HSY.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF714DUV bed narrowPeak conservative idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF109UAD, ENCFF156AOR, ENCFF283OIG, ENCFF419RSJ 265391 ENCODE Processing Pipeline 2e55d1223a1ded18627d40cc1d8ba15e https://www.encodeproject.org/files/ENCFF714DUV/@@download/ENCFF714DUV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF907WHF bed narrowPeak optimal idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF109UAD, ENCFF156AOR, ENCFF283OIG, ENCFF419RSJ 292596 ENCODE Processing Pipeline 1b28294b75af69206ef8b18c4eb5eb35 https://www.encodeproject.org/files/ENCFF907WHF/@@download/ENCFF907WHF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF588YUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF907WHF 774957 ENCODE Processing Pipeline 6a9b0d060984b0caa5b3c12ccc3dc377 https://www.encodeproject.org/files/ENCFF588YUQ/@@download/ENCFF588YUQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF027LYJ bigWig signal p-value ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF156ZIB, ENCFF801GGG, ENCFF881DVS 1502871390 ENCODE Processing Pipeline aad6964de07138342573a39caa7ea878 https://www.encodeproject.org/files/ENCFF027LYJ/@@download/ENCFF027LYJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF311ZNK bigWig signal p-value ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF156ZIB, ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 1882362766 ENCODE Processing Pipeline 3dce37e883ca113ff9f181318444eb3c https://www.encodeproject.org/files/ENCFF311ZNK/@@download/ENCFF311ZNK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF385YVX bigWig fold change over control ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF156ZIB, ENCFF801GGG, ENCFF881DVS 1679749064 ENCODE Processing Pipeline 7c91af860f369f5ab6df873d68b9524d https://www.encodeproject.org/files/ENCFF385YVX/@@download/ENCFF385YVX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF023VCD bigWig fold change over control ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF156ZIB, ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 1845601985 ENCODE Processing Pipeline 79204f2dbf9397f3a9da2350f0fb7730 https://www.encodeproject.org/files/ENCFF023VCD/@@download/ENCFF023VCD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF074PBC bigWig signal p-value ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 948126322 ENCODE Processing Pipeline 409fc4a4ee55eec4131eab7d0281ca45 https://www.encodeproject.org/files/ENCFF074PBC/@@download/ENCFF074PBC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF177DTZ bigWig fold change over control ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 772901455 ENCODE Processing Pipeline afd4b818f84312295ee5a8411b355fe0 https://www.encodeproject.org/files/ENCFF177DTZ/@@download/ENCFF177DTZ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF558UKL bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF156ZIB, ENCFF801GGG, ENCFF881DVS 6839013 ENCODE Processing Pipeline 22906d7aa13866205bb3c18f274eeaf9 https://www.encodeproject.org/files/ENCFF558UKL/@@download/ENCFF558UKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF218NQT bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF156ZIB, ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 7117228 ENCODE Processing Pipeline f6c9ab28fbb8cfa4d255159f743c8be9 https://www.encodeproject.org/files/ENCFF218NQT/@@download/ENCFF218NQT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF598TIP bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 6168949 ENCODE Processing Pipeline 886c705156324b9a638f98a93be8f70c https://www.encodeproject.org/files/ENCFF598TIP/@@download/ENCFF598TIP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF132KNA bed narrowPeak conservative idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF218NQT, ENCFF558UKL, ENCFF598TIP 268667 ENCODE Processing Pipeline b91a7077ae0c02a42a6146df0e716ad0 https://www.encodeproject.org/files/ENCFF132KNA/@@download/ENCFF132KNA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF890IRR bed narrowPeak optimal idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF001TDO, ENCFF218NQT, ENCFF558UKL, ENCFF598TIP 299101 ENCODE Processing Pipeline 1e9c6f523c529cd301d3dc301ea7924e https://www.encodeproject.org/files/ENCFF890IRR/@@download/ENCFF890IRR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF569EWS bigBed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF558UKL 13485616 ENCODE Processing Pipeline 0b542797ce3f6df4fe66ad9a2038a8a5 https://www.encodeproject.org/files/ENCFF569EWS/@@download/ENCFF569EWS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF563CNJ bigBed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF598TIP 13260123 ENCODE Processing Pipeline cc577452fb207143c9c58554cb77ef4c https://www.encodeproject.org/files/ENCFF563CNJ/@@download/ENCFF563CNJ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF589XHM bigBed narrowPeak conservative idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF132KNA 830735 ENCODE Processing Pipeline 4ca35215f9c652dd6ccd265d1e4afcb7 https://www.encodeproject.org/files/ENCFF589XHM/@@download/ENCFF589XHM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF479MMQ bigBed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF218NQT 13430760 ENCODE Processing Pipeline 97148703cb94b7a5640592afc225b199 https://www.encodeproject.org/files/ENCFF479MMQ/@@download/ENCFF479MMQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF953DXF bigBed narrowPeak optimal idr thresholded peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1, 2 ENCFF890IRR 780760 ENCODE Processing Pipeline e9e2cd8f8621ccea791dcfb8120c79c3 https://www.encodeproject.org/files/ENCFF953DXF/@@download/ENCFF953DXF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF416OBK bam unfiltered alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF163AGA, ENCFF352NWK, ENCFF807MUK 4735088043 ENCODE Processing Pipeline 826ce8079b26f24aba642b5a2058091a https://www.encodeproject.org/files/ENCFF416OBK/@@download/ENCFF416OBK.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF670NTA bam unfiltered alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF007RQD, ENCFF106LFT, ENCFF807MUK 4766948184 ENCODE Processing Pipeline 77ac135a235f2f16cae9e59664650cbd https://www.encodeproject.org/files/ENCFF670NTA/@@download/ENCFF670NTA.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF007RQD fastq reads ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF106LFT 2131716056 Michael Snyder, Stanford f7b3750f273fe677d2aff7e3db553d24 https://www.encodeproject.org/files/ENCFF007RQD/@@download/ENCFF007RQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF106LFT fastq reads ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF007RQD 2214329539 Michael Snyder, Stanford ebb93f2992b5b6638afce0ddc7e5cdc0 https://www.encodeproject.org/files/ENCFF106LFT/@@download/ENCFF106LFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF163AGA fastq reads ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF352NWK 2117849552 Michael Snyder, Stanford 13c686b946f93611d38d0033fe4749ec https://www.encodeproject.org/files/ENCFF163AGA/@@download/ENCFF163AGA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF352NWK fastq reads ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF163AGA 2146540108 Michael Snyder, Stanford db09a2963f1c5527bf9887e2014c8e93 https://www.encodeproject.org/files/ENCFF352NWK/@@download/ENCFF352NWK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF208FMF bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF163AGA, ENCFF352NWK, ENCFF807MUK 3943203361 ENCODE Processing Pipeline 2a0ab4f554555910ce80e1819ade9553 https://www.encodeproject.org/files/ENCFF208FMF/@@download/ENCFF208FMF.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF421LSY bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF007RQD, ENCFF106LFT, ENCFF807MUK 3778326135 ENCODE Processing Pipeline e2e5c0566cd420f6cc4c78e615b3826a https://www.encodeproject.org/files/ENCFF421LSY/@@download/ENCFF421LSY.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF281WOS bigWig signal p-value ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF208FMF, ENCFF581ZJL 1102553027 ENCODE Processing Pipeline 1311440497e155118a847965c2200fa4 https://www.encodeproject.org/files/ENCFF281WOS/@@download/ENCFF281WOS.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF258LLV bigWig signal p-value ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF208FMF, ENCFF421LSY, ENCFF581ZJL 1782723512 ENCODE Processing Pipeline 32fe1d25251124548fbd26dd21edf5d1 https://www.encodeproject.org/files/ENCFF258LLV/@@download/ENCFF258LLV.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF214CMH bigWig fold change over control ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF208FMF, ENCFF581ZJL 1117850225 ENCODE Processing Pipeline 40a9ce38ca1936bc562d3fe6e6b508b7 https://www.encodeproject.org/files/ENCFF214CMH/@@download/ENCFF214CMH.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF368HBP bigWig fold change over control ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF208FMF, ENCFF421LSY, ENCFF581ZJL 2041525437 ENCODE Processing Pipeline 4a4dfcb9075727fc0b54d0f4f9270527 https://www.encodeproject.org/files/ENCFF368HBP/@@download/ENCFF368HBP.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF918GZF bam unfiltered alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF163AGA, ENCFF352NWK, ENCFF643CGH 4739112566 ENCODE Processing Pipeline 8ac666f21646820e46e6318b82efd5b1 https://www.encodeproject.org/files/ENCFF918GZF/@@download/ENCFF918GZF.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF758AFU bam unfiltered alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF007RQD, ENCFF106LFT, ENCFF643CGH 4770748406 ENCODE Processing Pipeline 991b5b584eafed148cf0fab6ced02004 https://www.encodeproject.org/files/ENCFF758AFU/@@download/ENCFF758AFU.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF059NNP bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF007RQD, ENCFF106LFT, ENCFF643CGH 3781275125 ENCODE Processing Pipeline 0864d365af2b053081e646a5d3013290 https://www.encodeproject.org/files/ENCFF059NNP/@@download/ENCFF059NNP.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF221GWS bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF163AGA, ENCFF352NWK, ENCFF643CGH 3946453394 ENCODE Processing Pipeline 9f4ad88565dc7f0df264e0c0dcbae598 https://www.encodeproject.org/files/ENCFF221GWS/@@download/ENCFF221GWS.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF630UMR bigWig signal p-value ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF221GWS, ENCFF910IKB 982861224 ENCODE Processing Pipeline b40afd388332197472c16fe4b905621b https://www.encodeproject.org/files/ENCFF630UMR/@@download/ENCFF630UMR.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF804DBD bigWig signal p-value ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF059NNP, ENCFF227IZS 1085344703 ENCODE Processing Pipeline 977dd385b4890ad9b8f43729f7ed1095 https://www.encodeproject.org/files/ENCFF804DBD/@@download/ENCFF804DBD.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF662QET bigWig signal p-value ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF059NNP, ENCFF221GWS, ENCFF227IZS, ENCFF910IKB 1911268356 ENCODE Processing Pipeline 985db95cb2157e445f7fc2f3c2e79696 https://www.encodeproject.org/files/ENCFF662QET/@@download/ENCFF662QET.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF451IKP bigWig fold change over control ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF221GWS, ENCFF910IKB 1132202844 ENCODE Processing Pipeline c706a1d7a587832dfc62f4514201feb9 https://www.encodeproject.org/files/ENCFF451IKP/@@download/ENCFF451IKP.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF606TWO bigWig fold change over control ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF059NNP, ENCFF227IZS 1101555551 ENCODE Processing Pipeline 7d0e1becc3b8b43d58a4200fa3dedfd6 https://www.encodeproject.org/files/ENCFF606TWO/@@download/ENCFF606TWO.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF322YEU bigWig fold change over control ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF059NNP, ENCFF221GWS, ENCFF227IZS, ENCFF910IKB 2029772090 ENCODE Processing Pipeline ab5d16aaadff1f3f2990bdea6dce4904 https://www.encodeproject.org/files/ENCFF322YEU/@@download/ENCFF322YEU.bigWig GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF273STT bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF221GWS, ENCFF910IKB 6882638 ENCODE Processing Pipeline 95d9e23b835d223b8002319dfa025a19 https://www.encodeproject.org/files/ENCFF273STT/@@download/ENCFF273STT.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF262CQY bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF059NNP, ENCFF227IZS 6668760 ENCODE Processing Pipeline 75b9b66924524bbad3181392d72f648e https://www.encodeproject.org/files/ENCFF262CQY/@@download/ENCFF262CQY.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF131JCR bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF059NNP, ENCFF221GWS, ENCFF227IZS, ENCFF910IKB 7214841 ENCODE Processing Pipeline 91ff8fe529d08af471500557a663f4cf https://www.encodeproject.org/files/ENCFF131JCR/@@download/ENCFF131JCR.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF088IIA bigBed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF273STT 13029014 ENCODE Processing Pipeline 096478aeda094d662f70830582c58d09 https://www.encodeproject.org/files/ENCFF088IIA/@@download/ENCFF088IIA.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF052HZL bigBed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF262CQY 13220859 ENCODE Processing Pipeline ee7808caaedc458b114bf5521311d06f https://www.encodeproject.org/files/ENCFF052HZL/@@download/ENCFF052HZL.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF361MNY bigBed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF131JCR 12903500 ENCODE Processing Pipeline fe26be0af468d714e8740235425a037c https://www.encodeproject.org/files/ENCFF361MNY/@@download/ENCFF361MNY.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF129NQC bed narrowPeak conservative idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF131JCR, ENCFF262CQY, ENCFF273STT, ENCFF419RSJ 183440 ENCODE Processing Pipeline 513309565c8fdd58deeb247622f98cf0 https://www.encodeproject.org/files/ENCFF129NQC/@@download/ENCFF129NQC.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF240OKU bigBed narrowPeak conservative idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF129NQC 377499 ENCODE Processing Pipeline 2756c4700dfb496741fff3d4e153b453 https://www.encodeproject.org/files/ENCFF240OKU/@@download/ENCFF240OKU.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF430JFH bed narrowPeak optimal idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF131JCR, ENCFF262CQY, ENCFF273STT, ENCFF419RSJ 244558 ENCODE Processing Pipeline 8ae11d1153b850cad6bdd12c86ca6134 https://www.encodeproject.org/files/ENCFF430JFH/@@download/ENCFF430JFH.bed.gz GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF280XTA bigBed narrowPeak optimal idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF430JFH 562270 ENCODE Processing Pipeline da58928a8909be995e616375c9ab0365 https://www.encodeproject.org/files/ENCFF280XTA/@@download/ENCFF280XTA.bigBed GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF174QPI bigWig signal p-value ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF421LSY 955623516 ENCODE Processing Pipeline 915157618bf21537ae637769131cda8c https://www.encodeproject.org/files/ENCFF174QPI/@@download/ENCFF174QPI.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF192APL bigWig fold change over control ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF421LSY 1097621077 ENCODE Processing Pipeline b2b26bbc0f56af1c6b9412950cf3e524 https://www.encodeproject.org/files/ENCFF192APL/@@download/ENCFF192APL.bigWig hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF631AZA bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF208FMF, ENCFF421LSY, ENCFF581ZJL 7218198 ENCODE Processing Pipeline 62e7b00cb9cfd781b29facac5ff13921 https://www.encodeproject.org/files/ENCFF631AZA/@@download/ENCFF631AZA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF358IAH bed narrowPeak conservative idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF596YYO, ENCFF607MDM, ENCFF631AZA 182711 ENCODE Processing Pipeline cf93b6843600dbba5a4b9bc2c5f63ad2 https://www.encodeproject.org/files/ENCFF358IAH/@@download/ENCFF358IAH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF596YYO bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF421LSY 6691760 ENCODE Processing Pipeline 21e99697f4e8c0277093c77dc32879dc https://www.encodeproject.org/files/ENCFF596YYO/@@download/ENCFF596YYO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF607MDM bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF208FMF, ENCFF581ZJL 6879508 ENCODE Processing Pipeline 745e46fe25c71f7f3cc3aeec874591ee https://www.encodeproject.org/files/ENCFF607MDM/@@download/ENCFF607MDM.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF091XDO bigBed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF607MDM 13026851 ENCODE Processing Pipeline b0fe85a72b89b3a06ac3c2eb966aecb8 https://www.encodeproject.org/files/ENCFF091XDO/@@download/ENCFF091XDO.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF293BPQ bigBed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF596YYO 13227744 ENCODE Processing Pipeline c9059b21c6802c215f8e6652cb635114 https://www.encodeproject.org/files/ENCFF293BPQ/@@download/ENCFF293BPQ.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF601AZZ bigBed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF631AZA 12900825 ENCODE Processing Pipeline 096c6afddf2afd9d32fc258d1a036897 https://www.encodeproject.org/files/ENCFF601AZZ/@@download/ENCFF601AZZ.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF723RSX bed narrowPeak optimal idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF596YYO, ENCFF607MDM, ENCFF631AZA 249584 ENCODE Processing Pipeline d4f82f8346e6cfaeeea5dffc52df893e https://www.encodeproject.org/files/ENCFF723RSX/@@download/ENCFF723RSX.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF194PKX bigBed narrowPeak optimal idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF723RSX 567001 ENCODE Processing Pipeline 41ddcf9e901b2b2f9b5264b3365131d9 https://www.encodeproject.org/files/ENCFF194PKX/@@download/ENCFF194PKX.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF894LUM bigBed narrowPeak conservative idr thresholded peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF358IAH 453235 ENCODE Processing Pipeline a3c4a7982f9fd97eddc77410019ecd93 https://www.encodeproject.org/files/ENCFF894LUM/@@download/ENCFF894LUM.bigBed hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF503FIY bam unfiltered alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 50 ENCFF088CRF, ENCFF807MUK 1224670823 ENCODE Processing Pipeline f1aca23a41505b55226fe035178eb414 https://www.encodeproject.org/files/ENCFF503FIY/@@download/ENCFF503FIY.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF080SFN bam unfiltered alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 50 ENCFF052ZGR, ENCFF807MUK 1805036682 ENCODE Processing Pipeline bd0094cbc380630eb5ac8f24f31703a7 https://www.encodeproject.org/files/ENCFF080SFN/@@download/ENCFF080SFN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF088CRF fastq reads ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 1 50 single-ended 1225224553 Richard Myers, HAIB 3cfdb3f38b9485d1795c454b459f0967 SRA:SRR5338579 https://www.encodeproject.org/files/ENCFF088CRF/@@download/ENCFF088CRF.fastq.gz Illumina HiSeq 2000 /files/ENCFF774EJH/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF052ZGR fastq reads ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 1 50 single-ended 1735622346 Richard Myers, HAIB d14581d4931c72a884e69a61d4c31682 SRA:SRR5338578 https://www.encodeproject.org/files/ENCFF052ZGR/@@download/ENCFF052ZGR.fastq.gz Illumina HiSeq 2000 /files/ENCFF400XMH/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF953SAQ bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 50 ENCFF088CRF, ENCFF807MUK 780951289 ENCODE Processing Pipeline ee706d0402732860923e0e4c17ca8622 https://www.encodeproject.org/files/ENCFF953SAQ/@@download/ENCFF953SAQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF144CPG bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 50 ENCFF052ZGR, ENCFF807MUK 1259652794 ENCODE Processing Pipeline 1772459f11ec738d641217228bd94ae5 https://www.encodeproject.org/files/ENCFF144CPG/@@download/ENCFF144CPG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF130NRI bigWig fold change over control ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD 782751309 ENCODE Processing Pipeline 667e4bbb4c31b93bf3a54fa5936f94ba https://www.encodeproject.org/files/ENCFF130NRI/@@download/ENCFF130NRI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF864WXX bigWig signal p-value ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 837113966 ENCODE Processing Pipeline ecd383b9fe72626d96b32e9c2e653445 https://www.encodeproject.org/files/ENCFF864WXX/@@download/ENCFF864WXX.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF372AWS bigWig signal p-value ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD 912715326 ENCODE Processing Pipeline 21ffa6f16d0ff2ea3e2faa009b83e1fb https://www.encodeproject.org/files/ENCFF372AWS/@@download/ENCFF372AWS.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF661YGP bigWig signal p-value ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 1002410894 ENCODE Processing Pipeline f8c5b6224a84a36a50d8b36dc13ffba1 https://www.encodeproject.org/files/ENCFF661YGP/@@download/ENCFF661YGP.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF494DUB bigWig fold change over control ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 566758252 ENCODE Processing Pipeline e7e889ee478a90db6056205033969a3a https://www.encodeproject.org/files/ENCFF494DUB/@@download/ENCFF494DUB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF693GNL bigWig fold change over control ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 1064968594 ENCODE Processing Pipeline 1a124f3d5506c807506cfec0b1386366 https://www.encodeproject.org/files/ENCFF693GNL/@@download/ENCFF693GNL.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF416FBH bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD 6354589 ENCODE Processing Pipeline 9838d379404171f2fb9406628afb8ef6 https://www.encodeproject.org/files/ENCFF416FBH/@@download/ENCFF416FBH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF929FJI bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 5900193 ENCODE Processing Pipeline cfbcf03baa291b99beb93586aa3f37cd https://www.encodeproject.org/files/ENCFF929FJI/@@download/ENCFF929FJI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF429ZJG bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 6721454 ENCODE Processing Pipeline f11c47d20371228932e49a1b4b9c3ef5 https://www.encodeproject.org/files/ENCFF429ZJG/@@download/ENCFF429ZJG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF884WZN bigBed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF416FBH 13481760 ENCODE Processing Pipeline 5f81cb337c028880aeb21227991211d3 https://www.encodeproject.org/files/ENCFF884WZN/@@download/ENCFF884WZN.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF570OCZ bigBed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF929FJI 13449373 ENCODE Processing Pipeline b54ae98bfa5bfbd4e1b4e55cffdc9c78 https://www.encodeproject.org/files/ENCFF570OCZ/@@download/ENCFF570OCZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF142ROP bigBed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF429ZJG 13424525 ENCODE Processing Pipeline 568838d52e010f3c5ec37bdadd8457e0 https://www.encodeproject.org/files/ENCFF142ROP/@@download/ENCFF142ROP.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF719KST bed narrowPeak conservative idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF001TDO, ENCFF416FBH, ENCFF429ZJG, ENCFF929FJI 111600 ENCODE Processing Pipeline 95a7f52d4d77b88ebefe468566d3a599 https://www.encodeproject.org/files/ENCFF719KST/@@download/ENCFF719KST.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF944TTQ bigBed narrowPeak conservative idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF719KST 284858 ENCODE Processing Pipeline aa7a99bc759319292ae1f3b15361374b https://www.encodeproject.org/files/ENCFF944TTQ/@@download/ENCFF944TTQ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF434QZL bed narrowPeak optimal idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF001TDO, ENCFF416FBH, ENCFF429ZJG, ENCFF929FJI 128593 ENCODE Processing Pipeline 4f90e8cc9263cacf63e92bbbf564133f https://www.encodeproject.org/files/ENCFF434QZL/@@download/ENCFF434QZL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF594PIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF434QZL 310929 ENCODE Processing Pipeline 43b39396a59a85b393d663e234e6293d https://www.encodeproject.org/files/ENCFF594PIQ/@@download/ENCFF594PIQ.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF465CQV bam unfiltered alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 50 ENCFF088CRF, ENCFF643CGH 1227881778 ENCODE Processing Pipeline e2bf4218c3645c929986c8aad935cb1e https://www.encodeproject.org/files/ENCFF465CQV/@@download/ENCFF465CQV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF818RKE bam unfiltered alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 50 ENCFF052ZGR, ENCFF643CGH 1809479121 ENCODE Processing Pipeline ecb3900b172e779d5c5526126635fde8 https://www.encodeproject.org/files/ENCFF818RKE/@@download/ENCFF818RKE.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF290MEZ bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 50 ENCFF088CRF, ENCFF643CGH 780462628 ENCODE Processing Pipeline 03c6e84f5dde18a33ac814c70c0f8494 https://www.encodeproject.org/files/ENCFF290MEZ/@@download/ENCFF290MEZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF544ZPF bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 50 ENCFF052ZGR, ENCFF643CGH 1258971772 ENCODE Processing Pipeline add3eee9dea099401f10347bdb3be49a https://www.encodeproject.org/files/ENCFF544ZPF/@@download/ENCFF544ZPF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF573KIX bigWig signal p-value ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF063BAN, ENCFF213VVQ, ENCFF544ZPF 872193364 ENCODE Processing Pipeline 4b0d6760dc86e1a5a080eab6d31d19ef https://www.encodeproject.org/files/ENCFF573KIX/@@download/ENCFF573KIX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF683QDN bigWig signal p-value ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF063BAN, ENCFF213VVQ, ENCFF290MEZ 805130479 ENCODE Processing Pipeline 13be03f01b95fbb6cca4f967a7389cce https://www.encodeproject.org/files/ENCFF683QDN/@@download/ENCFF683QDN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF196XYY bigWig fold change over control ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF063BAN, ENCFF213VVQ, ENCFF544ZPF 782642129 ENCODE Processing Pipeline bb759b45af0348019dfba5f1aa0b0f1a https://www.encodeproject.org/files/ENCFF196XYY/@@download/ENCFF196XYY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF337BHU bigWig signal p-value ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF063BAN, ENCFF213VVQ, ENCFF290MEZ, ENCFF544ZPF 1107179136 ENCODE Processing Pipeline 39fdb76eea3ba4fe4b6148b0cb3c8b36 https://www.encodeproject.org/files/ENCFF337BHU/@@download/ENCFF337BHU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF911OFZ bigWig fold change over control ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF063BAN, ENCFF213VVQ, ENCFF290MEZ 574732836 ENCODE Processing Pipeline baa019407ce1d734995a865f44938997 https://www.encodeproject.org/files/ENCFF911OFZ/@@download/ENCFF911OFZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF777KJU bigWig fold change over control ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF063BAN, ENCFF213VVQ, ENCFF290MEZ, ENCFF544ZPF 1050274137 ENCODE Processing Pipeline d42a4ef1b036896e2842a588a79a9bdf https://www.encodeproject.org/files/ENCFF777KJU/@@download/ENCFF777KJU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF486YBJ bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF063BAN, ENCFF213VVQ, ENCFF290MEZ 5728178 ENCODE Processing Pipeline 0e7310b6996bb7f29f30cb9eddcaccf0 https://www.encodeproject.org/files/ENCFF486YBJ/@@download/ENCFF486YBJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF737CGV bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF063BAN, ENCFF213VVQ, ENCFF290MEZ, ENCFF544ZPF 6557854 ENCODE Processing Pipeline 43cd66592b1c67a3296893c809fe7113 https://www.encodeproject.org/files/ENCFF737CGV/@@download/ENCFF737CGV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF540MKX bigBed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF486YBJ 13427229 ENCODE Processing Pipeline e5c1df5b6265a4294258748b15f649e9 https://www.encodeproject.org/files/ENCFF540MKX/@@download/ENCFF540MKX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF012GDK bigBed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF737CGV 13426524 ENCODE Processing Pipeline 31ea60bc94521a27e90ab732f197c409 https://www.encodeproject.org/files/ENCFF012GDK/@@download/ENCFF012GDK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF983RQW bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF063BAN, ENCFF213VVQ, ENCFF544ZPF 6138545 ENCODE Processing Pipeline 201862c3d0457ae2cb4193b5c8341565 https://www.encodeproject.org/files/ENCFF983RQW/@@download/ENCFF983RQW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF710VXX bigBed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF983RQW 13467520 ENCODE Processing Pipeline dda13f464a141de4798f0d4975e5438d https://www.encodeproject.org/files/ENCFF710VXX/@@download/ENCFF710VXX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF352LFK bigBed narrowPeak conservative idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF059AZP 286889 ENCODE Processing Pipeline e8f2bbbfd4ac7d52dc228f15cc25c7b4 https://www.encodeproject.org/files/ENCFF352LFK/@@download/ENCFF352LFK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF013PKN bigBed narrowPeak optimal idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF913HCQ 317835 ENCODE Processing Pipeline 57f4068b469877cd352a95c1121d7454 https://www.encodeproject.org/files/ENCFF013PKN/@@download/ENCFF013PKN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF059AZP bed narrowPeak conservative idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF486YBJ, ENCFF737CGV, ENCFF983RQW 112313 ENCODE Processing Pipeline 5b315df459532cd4d767e2dc11387fb2 https://www.encodeproject.org/files/ENCFF059AZP/@@download/ENCFF059AZP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF913HCQ bed narrowPeak optimal idr thresholded peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF486YBJ, ENCFF737CGV, ENCFF983RQW 132646 ENCODE Processing Pipeline b70784948dfa6357fa0dc16a2d1d4dc2 https://www.encodeproject.org/files/ENCFF913HCQ/@@download/ENCFF913HCQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF148WIN bam unfiltered alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF527JAY, ENCFF662WYC, ENCFF807MUK 5663295004 ENCODE Processing Pipeline 81fed9161bb3e9f8f83c2a7bc3d39de9 https://www.encodeproject.org/files/ENCFF148WIN/@@download/ENCFF148WIN.bam hg19 released ENCFF643KNT bam unfiltered alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF605PXJ, ENCFF807MUK, ENCFF815CWB 5450616721 ENCODE Processing Pipeline 970c5a85281d54f031f61292eb8f84e3 https://www.encodeproject.org/files/ENCFF643KNT/@@download/ENCFF643KNT.bam hg19 released ENCFF662WYC fastq reads ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 1 ENCFF527JAY 2571714601 Michael Snyder, Stanford 2db09fe51a45bf6efa676fc125ac1d00 SRA:SRR6213022 https://www.encodeproject.org/files/ENCFF662WYC/@@download/ENCFF662WYC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released ENCFF605PXJ fastq reads ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF815CWB 2451927778 Michael Snyder, Stanford 5d29b7182d757b17b21114b0c58a1a65 SRA:SRR6213023 https://www.encodeproject.org/files/ENCFF605PXJ/@@download/ENCFF605PXJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released ENCFF815CWB fastq reads ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF605PXJ 2465679794 Michael Snyder, Stanford 230da52f1e1f0850609bb86a74346d58 SRA:SRR6213023 https://www.encodeproject.org/files/ENCFF815CWB/@@download/ENCFF815CWB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released ENCFF527JAY fastq reads ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 1 100 paired-ended 2 ENCFF662WYC 2579564538 Michael Snyder, Stanford f0a4b0feba9e9e298df2599de3133dd4 SRA:SRR6213022 https://www.encodeproject.org/files/ENCFF527JAY/@@download/ENCFF527JAY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released ENCFF055EFE bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF605PXJ, ENCFF807MUK, ENCFF815CWB 4687423666 ENCODE Processing Pipeline 40e90ef0726e0f0258ec85784e2faa1f https://www.encodeproject.org/files/ENCFF055EFE/@@download/ENCFF055EFE.bam hg19 released ENCFF240UFD bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF527JAY, ENCFF662WYC, ENCFF807MUK 4799216350 ENCODE Processing Pipeline 32973e74e10cf20a95b865ba0603f919 https://www.encodeproject.org/files/ENCFF240UFD/@@download/ENCFF240UFD.bam hg19 released ENCFF934IMS bam unfiltered alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF605PXJ, ENCFF643CGH, ENCFF815CWB 5460916422 ENCODE Processing Pipeline 3f3f00c6b801cf072bba0eb7447f62a4 https://www.encodeproject.org/files/ENCFF934IMS/@@download/ENCFF934IMS.bam GRCh38 released ENCFF896ZIV bam unfiltered alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF527JAY, ENCFF643CGH, ENCFF662WYC 5673661715 ENCODE Processing Pipeline 3a925d899dd124a04b4a539bb49b333c https://www.encodeproject.org/files/ENCFF896ZIV/@@download/ENCFF896ZIV.bam GRCh38 released ENCFF962EFL bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF527JAY, ENCFF643CGH, ENCFF662WYC 4807030027 ENCODE Processing Pipeline 115c7dd84ad21b55ee4969d4e9ee1cb1 https://www.encodeproject.org/files/ENCFF962EFL/@@download/ENCFF962EFL.bam GRCh38 released ENCFF338ZSU bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF605PXJ, ENCFF643CGH, ENCFF815CWB 4693758444 ENCODE Processing Pipeline 44969661ab10e6dd8e992fc712c23c0f https://www.encodeproject.org/files/ENCFF338ZSU/@@download/ENCFF338ZSU.bam GRCh38 released ENCFF502FPP bigWig signal p-value ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF338ZSU, ENCFF426RDP 891904708 ENCODE Processing Pipeline 5f61d18797580c15853ccb54234f5f4b https://www.encodeproject.org/files/ENCFF502FPP/@@download/ENCFF502FPP.bigWig GRCh38 released ENCFF526IBM bigWig signal p-value ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF962EFL 1151264071 ENCODE Processing Pipeline 5ecdbde48de948313b086d1567a0389b https://www.encodeproject.org/files/ENCFF526IBM/@@download/ENCFF526IBM.bigWig GRCh38 released ENCFF502NRS bigWig signal p-value ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF338ZSU, ENCFF426RDP, ENCFF962EFL 1652083737 ENCODE Processing Pipeline 6437aeacc77ab1f3590956947f7dd7f2 https://www.encodeproject.org/files/ENCFF502NRS/@@download/ENCFF502NRS.bigWig GRCh38 released ENCFF748QAH bigWig fold change over control ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF338ZSU, ENCFF426RDP 1107282307 ENCODE Processing Pipeline 5830516fbb034704618b88eb3bc3a83d https://www.encodeproject.org/files/ENCFF748QAH/@@download/ENCFF748QAH.bigWig GRCh38 released ENCFF476LVI bigWig fold change over control ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF962EFL 1162232911 ENCODE Processing Pipeline 88b90dadef27d33325633c8e1b1ef040 https://www.encodeproject.org/files/ENCFF476LVI/@@download/ENCFF476LVI.bigWig GRCh38 released ENCFF005GDA bigWig fold change over control ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF338ZSU, ENCFF426RDP, ENCFF962EFL 2076263639 ENCODE Processing Pipeline 04d97b9bd9f9fdcd73089e9088549576 https://www.encodeproject.org/files/ENCFF005GDA/@@download/ENCFF005GDA.bigWig GRCh38 released ENCFF907QUX bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF338ZSU, ENCFF426RDP 6428953 ENCODE Processing Pipeline 2a91fe9ac62f6c9a759df5aa4e7bb68e https://www.encodeproject.org/files/ENCFF907QUX/@@download/ENCFF907QUX.bed.gz GRCh38 released ENCFF631LWN bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF291AFY, ENCFF962EFL 6346883 ENCODE Processing Pipeline 6a8cb56954a76ca5e39df4540533a480 https://www.encodeproject.org/files/ENCFF631LWN/@@download/ENCFF631LWN.bed.gz GRCh38 released ENCFF150HGP bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF291AFY, ENCFF338ZSU, ENCFF426RDP, ENCFF962EFL 7180189 ENCODE Processing Pipeline 674384ffb84e7293a5a79b283e252198 https://www.encodeproject.org/files/ENCFF150HGP/@@download/ENCFF150HGP.bed.gz GRCh38 released ENCFF917FXD bigBed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF907QUX 13241689 ENCODE Processing Pipeline d77e2a0462b44c8e26601e1fea9a8911 https://www.encodeproject.org/files/ENCFF917FXD/@@download/ENCFF917FXD.bigBed GRCh38 released ENCFF304LZS bigBed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF631LWN 13286624 ENCODE Processing Pipeline 8498cb4e442c52eaff968306bcc81b2a https://www.encodeproject.org/files/ENCFF304LZS/@@download/ENCFF304LZS.bigBed GRCh38 released ENCFF961UPF bigBed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF150HGP 13194895 ENCODE Processing Pipeline 5663f0a3cb141498c8d83b0807028932 https://www.encodeproject.org/files/ENCFF961UPF/@@download/ENCFF961UPF.bigBed GRCh38 released ENCFF160SNW bed narrowPeak conservative idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF150HGP, ENCFF419RSJ, ENCFF631LWN, ENCFF907QUX 109506 ENCODE Processing Pipeline b81b739c947805499bc411682e557d2a https://www.encodeproject.org/files/ENCFF160SNW/@@download/ENCFF160SNW.bed.gz GRCh38 released ENCFF609QRW bigBed narrowPeak conservative idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF160SNW 260307 ENCODE Processing Pipeline f45999753327b80155bd0409a2530fa7 https://www.encodeproject.org/files/ENCFF609QRW/@@download/ENCFF609QRW.bigBed GRCh38 released ENCFF794UEM bed narrowPeak optimal idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF150HGP, ENCFF419RSJ, ENCFF631LWN, ENCFF907QUX 191614 ENCODE Processing Pipeline e1ceffd6dc1525a7252900822469b345 https://www.encodeproject.org/files/ENCFF794UEM/@@download/ENCFF794UEM.bed.gz GRCh38 released ENCFF260OER bigBed narrowPeak optimal idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF794UEM 386424 ENCODE Processing Pipeline e4ce18a621719d7b998e5c0a913394ba https://www.encodeproject.org/files/ENCFF260OER/@@download/ENCFF260OER.bigBed GRCh38 released ENCFF788MLC bigWig signal p-value ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF055EFE, ENCFF583FAG 959977060 ENCODE Processing Pipeline a402b30c520b4f09e60183f653ac809e https://www.encodeproject.org/files/ENCFF788MLC/@@download/ENCFF788MLC.bigWig hg19 released ENCFF722UTN bigWig fold change over control ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF055EFE, ENCFF583FAG 1101777375 ENCODE Processing Pipeline bd3249a0f0a5c7940886c97c9a2a1275 https://www.encodeproject.org/files/ENCFF722UTN/@@download/ENCFF722UTN.bigWig hg19 released ENCFF378KAZ bigWig signal p-value ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF240UFD 1216061638 ENCODE Processing Pipeline 32f6795d122326525b8db8594b0812e3 https://www.encodeproject.org/files/ENCFF378KAZ/@@download/ENCFF378KAZ.bigWig hg19 released ENCFF706XKY bigWig signal p-value ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF055EFE, ENCFF240UFD, ENCFF583FAG 1623849289 ENCODE Processing Pipeline 3ccbf72457389b28270519b351491893 https://www.encodeproject.org/files/ENCFF706XKY/@@download/ENCFF706XKY.bigWig hg19 released ENCFF772IPG bigWig fold change over control ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF240UFD 1150031254 ENCODE Processing Pipeline fe33e15efe6cd9be0a4a0aa68ca3fd46 https://www.encodeproject.org/files/ENCFF772IPG/@@download/ENCFF772IPG.bigWig hg19 released ENCFF862EBX bigWig fold change over control ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF055EFE, ENCFF240UFD, ENCFF583FAG 2069647701 ENCODE Processing Pipeline 12089d220af282f4d3ab35a6242071fe https://www.encodeproject.org/files/ENCFF862EBX/@@download/ENCFF862EBX.bigWig hg19 released ENCFF193XWN bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF049MPQ, ENCFF055EFE, ENCFF240UFD, ENCFF583FAG 7165536 ENCODE Processing Pipeline 26fda6961a80287a316247d76face906 https://www.encodeproject.org/files/ENCFF193XWN/@@download/ENCFF193XWN.bed.gz hg19 released ENCFF855RIG bigBed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF833ZCJ 13262488 ENCODE Processing Pipeline ce8e5c8472611da6dd63578f44a4fda5 https://www.encodeproject.org/files/ENCFF855RIG/@@download/ENCFF855RIG.bigBed hg19 released ENCFF493AQA bigBed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF193XWN 13175146 ENCODE Processing Pipeline d2caeb17a1c55b299cbebb79cd287dfc https://www.encodeproject.org/files/ENCFF493AQA/@@download/ENCFF493AQA.bigBed hg19 released ENCFF985FOK bed narrowPeak conservative idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF193XWN, ENCFF608QLM, ENCFF833ZCJ 103131 ENCODE Processing Pipeline 7745723d5dbe2025d78307f749344a6a https://www.encodeproject.org/files/ENCFF985FOK/@@download/ENCFF985FOK.bed.gz hg19 released ENCFF608QLM bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF055EFE, ENCFF583FAG 6424461 ENCODE Processing Pipeline 37608a9ff71aa0a8835790283f76c2d8 https://www.encodeproject.org/files/ENCFF608QLM/@@download/ENCFF608QLM.bed.gz hg19 released ENCFF275ZKE bigBed narrowPeak conservative idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF985FOK 250547 ENCODE Processing Pipeline de7e19570229563df8fc9bc3a95a1523 https://www.encodeproject.org/files/ENCFF275ZKE/@@download/ENCFF275ZKE.bigBed hg19 released ENCFF833ZCJ bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF240UFD 6333248 ENCODE Processing Pipeline 4a72c6407220843cae6b75d867fcef59 https://www.encodeproject.org/files/ENCFF833ZCJ/@@download/ENCFF833ZCJ.bed.gz hg19 released ENCFF975TUD bigBed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF608QLM 13224860 ENCODE Processing Pipeline 06b1e429c653c5a13e2180df4898f159 https://www.encodeproject.org/files/ENCFF975TUD/@@download/ENCFF975TUD.bigBed hg19 released ENCFF070WUF bed narrowPeak optimal idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF001TDO, ENCFF193XWN, ENCFF608QLM, ENCFF833ZCJ 181313 ENCODE Processing Pipeline 47ce73959ffcfc87815a378c3caf15a5 https://www.encodeproject.org/files/ENCFF070WUF/@@download/ENCFF070WUF.bed.gz hg19 released ENCFF621ZJB bigBed narrowPeak optimal idr thresholded peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1, 2 ENCFF070WUF 370589 ENCODE Processing Pipeline d5a403d5e80c5cf4ac73b683ba0cf56c https://www.encodeproject.org/files/ENCFF621ZJB/@@download/ENCFF621ZJB.bigBed hg19 released ENCFF714AAZ bam unfiltered alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF045KIH, ENCFF432IRL, ENCFF807MUK 3266000341 ENCODE Processing Pipeline df5f7c286fad3b7339bfe40c24056b68 https://www.encodeproject.org/files/ENCFF714AAZ/@@download/ENCFF714AAZ.bam hg19 released low read depth ENCFF414KLE bam unfiltered alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF693IXS, ENCFF720JCW, ENCFF807MUK 6233854466 ENCODE Processing Pipeline c626e91b12d4d37b659ca1bf305c6bca https://www.encodeproject.org/files/ENCFF414KLE/@@download/ENCFF414KLE.bam hg19 released low read depth ENCFF720JCW fastq reads ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 2 ENCFF693IXS 2860575529 Michael Snyder, Stanford 3b64517ce4d8276a57118626cfb130d5 SRA:SRR5111529 https://www.encodeproject.org/files/ENCFF720JCW/@@download/ENCFF720JCW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released low read depth ENCFF693IXS fastq reads ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 1 100 paired-ended 1 ENCFF720JCW 2859572952 Michael Snyder, Stanford 67dc4922a317310a27050b149968fe01 SRA:SRR5111529 https://www.encodeproject.org/files/ENCFF693IXS/@@download/ENCFF693IXS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released low read depth ENCFF432IRL fastq reads ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 1 100 paired-ended 2 ENCFF045KIH 1472507674 Michael Snyder, Stanford 7ed2ea7219958a160e3aabde87c19f52 SRA:SRR5111530 https://www.encodeproject.org/files/ENCFF432IRL/@@download/ENCFF432IRL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released low read depth ENCFF045KIH fastq reads ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 1 100 paired-ended 1 ENCFF432IRL 1427664325 Michael Snyder, Stanford 1d8cdbddb126633f8b733e87cc89466b SRA:SRR5111530 https://www.encodeproject.org/files/ENCFF045KIH/@@download/ENCFF045KIH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released low read depth ENCFF646VJD bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF045KIH, ENCFF432IRL, ENCFF807MUK 2740059921 ENCODE Processing Pipeline 0c2570eeabe864dbf8b07d2d1bdb5eca https://www.encodeproject.org/files/ENCFF646VJD/@@download/ENCFF646VJD.bam hg19 released low read depth ENCFF648VRU bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF693IXS, ENCFF720JCW, ENCFF807MUK 5095133938 ENCODE Processing Pipeline 67beac12962aa33c0f026772a3a99b72 https://www.encodeproject.org/files/ENCFF648VRU/@@download/ENCFF648VRU.bam hg19 released low read depth ENCFF583CGI bigWig signal p-value ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF583FAG, ENCFF648VRU 1021906577 ENCODE Processing Pipeline 21f29c0e5d81dc21ea2cefac7c737625 https://www.encodeproject.org/files/ENCFF583CGI/@@download/ENCFF583CGI.bigWig hg19 released low read depth ENCFF745LYI bigWig signal p-value ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF049MPQ, ENCFF646VJD 961928908 ENCODE Processing Pipeline 2f04249ca348a0930c7397ea99f113f1 https://www.encodeproject.org/files/ENCFF745LYI/@@download/ENCFF745LYI.bigWig hg19 released low read depth ENCFF047ERB bigWig fold change over control ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF583FAG, ENCFF648VRU 1136291375 ENCODE Processing Pipeline be6c81dd9ec49f186dda6cbc2031f0e6 https://www.encodeproject.org/files/ENCFF047ERB/@@download/ENCFF047ERB.bigWig hg19 released low read depth ENCFF367DCQ bigWig signal p-value ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF049MPQ, ENCFF583FAG, ENCFF646VJD, ENCFF648VRU 1838204132 ENCODE Processing Pipeline 853644bc2a70abe72eefd823b1169f91 https://www.encodeproject.org/files/ENCFF367DCQ/@@download/ENCFF367DCQ.bigWig hg19 released low read depth ENCFF314YBX bigWig fold change over control ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF049MPQ, ENCFF646VJD 863943668 ENCODE Processing Pipeline 4e40e3848cd48a50708518fad74cc534 https://www.encodeproject.org/files/ENCFF314YBX/@@download/ENCFF314YBX.bigWig hg19 released low read depth ENCFF733OPZ bigWig fold change over control ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF049MPQ, ENCFF583FAG, ENCFF646VJD, ENCFF648VRU 1906666723 ENCODE Processing Pipeline 7526d532f80085b661210252249a4caa https://www.encodeproject.org/files/ENCFF733OPZ/@@download/ENCFF733OPZ.bigWig hg19 released low read depth ENCFF833DXW bed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF583FAG, ENCFF648VRU 6282710 ENCODE Processing Pipeline 30aa64c15f012685084a298a0cc36800 https://www.encodeproject.org/files/ENCFF833DXW/@@download/ENCFF833DXW.bed.gz hg19 released low read depth ENCFF020HHV bigBed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF833DXW 11241343 ENCODE Processing Pipeline a15d3657ebe983c3955b01d5a491c303 https://www.encodeproject.org/files/ENCFF020HHV/@@download/ENCFF020HHV.bigBed hg19 released low read depth ENCFF978NGW bigBed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF804UPE 13328643 ENCODE Processing Pipeline e37c84eff5cf0fd078c58ef07cfe45a9 https://www.encodeproject.org/files/ENCFF978NGW/@@download/ENCFF978NGW.bigBed hg19 released low read depth ENCFF836PMF bed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF049MPQ, ENCFF646VJD 5970521 ENCODE Processing Pipeline 8cc088a0262063a3b00568fd2231916b https://www.encodeproject.org/files/ENCFF836PMF/@@download/ENCFF836PMF.bed.gz hg19 released low read depth ENCFF804UPE bed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF049MPQ, ENCFF583FAG, ENCFF646VJD, ENCFF648VRU 7079269 ENCODE Processing Pipeline 8b4f0cefd077b3b10dbd693777a2fc02 https://www.encodeproject.org/files/ENCFF804UPE/@@download/ENCFF804UPE.bed.gz hg19 released low read depth ENCFF355QNI bigBed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF836PMF 11236006 ENCODE Processing Pipeline badfeebd14a87b1b2c025a6fbbd0a0dc https://www.encodeproject.org/files/ENCFF355QNI/@@download/ENCFF355QNI.bigBed hg19 released low read depth ENCFF684LQZ bam unfiltered alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF045KIH, ENCFF432IRL, ENCFF643CGH 3271699922 ENCODE Processing Pipeline 9d52b5f5eeeffd6574da2b9381936432 https://www.encodeproject.org/files/ENCFF684LQZ/@@download/ENCFF684LQZ.bam GRCh38 released low read depth ENCFF981IGD bam unfiltered alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF643CGH, ENCFF693IXS, ENCFF720JCW 6244429630 ENCODE Processing Pipeline ad0fbc22f48790ffb4ddaf1c59ea3946 https://www.encodeproject.org/files/ENCFF981IGD/@@download/ENCFF981IGD.bam GRCh38 released low read depth ENCFF097RWA bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF045KIH, ENCFF432IRL, ENCFF643CGH 2742967428 ENCODE Processing Pipeline 9e535d4956272409985d81f234bdd140 https://www.encodeproject.org/files/ENCFF097RWA/@@download/ENCFF097RWA.bam GRCh38 released low read depth ENCFF324WPH bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF643CGH, ENCFF693IXS, ENCFF720JCW 5102031974 ENCODE Processing Pipeline 5ac57fc0b19106e2efe5a2a5c3856435 https://www.encodeproject.org/files/ENCFF324WPH/@@download/ENCFF324WPH.bam GRCh38 released low read depth ENCFF603GZZ bigWig signal p-value ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF324WPH, ENCFF426RDP 1063657900 ENCODE Processing Pipeline d74e264934ef900672a7c84ee902ecf2 https://www.encodeproject.org/files/ENCFF603GZZ/@@download/ENCFF603GZZ.bigWig GRCh38 released low read depth ENCFF878XIZ bigWig signal p-value ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF097RWA, ENCFF291AFY 917592710 ENCODE Processing Pipeline 34a553f8612d7f1a5e38d3739b66a895 https://www.encodeproject.org/files/ENCFF878XIZ/@@download/ENCFF878XIZ.bigWig GRCh38 released low read depth ENCFF532NAT bigWig signal p-value ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF097RWA, ENCFF291AFY, ENCFF324WPH, ENCFF426RDP 1829613858 ENCODE Processing Pipeline c8812d1f2b80f63a5ec64fd78b8b5252 https://www.encodeproject.org/files/ENCFF532NAT/@@download/ENCFF532NAT.bigWig GRCh38 released low read depth ENCFF448PJH bigWig fold change over control ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF324WPH, ENCFF426RDP 1148836322 ENCODE Processing Pipeline fcf072871f09b2dfe195c54d2bb069e4 https://www.encodeproject.org/files/ENCFF448PJH/@@download/ENCFF448PJH.bigWig GRCh38 released low read depth ENCFF535OCA bigWig fold change over control ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF097RWA, ENCFF291AFY 868847401 ENCODE Processing Pipeline 2119526675d3a1e2689e2ea73d0ffa41 https://www.encodeproject.org/files/ENCFF535OCA/@@download/ENCFF535OCA.bigWig GRCh38 released low read depth ENCFF259MJI bigWig fold change over control ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF097RWA, ENCFF291AFY, ENCFF324WPH, ENCFF426RDP 1908544038 ENCODE Processing Pipeline 6987f9470644044043ecb30852b30cf6 https://www.encodeproject.org/files/ENCFF259MJI/@@download/ENCFF259MJI.bigWig GRCh38 released low read depth ENCFF078KPJ bed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF097RWA, ENCFF291AFY 5810595 ENCODE Processing Pipeline 6a26ad5a901044bce950713dc4815397 https://www.encodeproject.org/files/ENCFF078KPJ/@@download/ENCFF078KPJ.bed.gz GRCh38 released low read depth ENCFF246DXG bigBed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 ENCFF078KPJ 11226889 ENCODE Processing Pipeline 19bba7b228902dd01c3779208d629e62 https://www.encodeproject.org/files/ENCFF246DXG/@@download/ENCFF246DXG.bigBed GRCh38 released low read depth ENCFF629FCQ bed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF097RWA, ENCFF291AFY, ENCFF324WPH, ENCFF426RDP 7031350 ENCODE Processing Pipeline e085a755bb698d72cb9b4e4dabb307bf https://www.encodeproject.org/files/ENCFF629FCQ/@@download/ENCFF629FCQ.bed.gz GRCh38 released low read depth ENCFF540XRJ bed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF324WPH, ENCFF426RDP 6121237 ENCODE Processing Pipeline 8af68bc91c78e4e9aef1038051cde345 https://www.encodeproject.org/files/ENCFF540XRJ/@@download/ENCFF540XRJ.bed.gz GRCh38 released low read depth ENCFF967JBL bigBed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 ENCFF540XRJ 11245643 ENCODE Processing Pipeline f43dd693e82631310301fff45d101266 https://www.encodeproject.org/files/ENCFF967JBL/@@download/ENCFF967JBL.bigBed GRCh38 released low read depth ENCFF913TES bigBed narrowPeak peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF629FCQ 13352439 ENCODE Processing Pipeline d8fa461d87f734d3178816246c8e5fe5 https://www.encodeproject.org/files/ENCFF913TES/@@download/ENCFF913TES.bigBed GRCh38 released low read depth ENCFF391VMB bigBed narrowPeak conservative idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF391WQH 292427 ENCODE Processing Pipeline ca3fc2290462f70a49c0fb4c641b9329 https://www.encodeproject.org/files/ENCFF391VMB/@@download/ENCFF391VMB.bigBed GRCh38 released low read depth ENCFF391WQH bed narrowPeak conservative idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF078KPJ, ENCFF419RSJ, ENCFF540XRJ, ENCFF629FCQ 129458 ENCODE Processing Pipeline 1aa68ecb5f51fbf682248ce9a0d0e5b4 https://www.encodeproject.org/files/ENCFF391WQH/@@download/ENCFF391WQH.bed.gz GRCh38 released low read depth ENCFF838LXI bed narrowPeak optimal idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF078KPJ, ENCFF419RSJ, ENCFF540XRJ, ENCFF629FCQ 206696 ENCODE Processing Pipeline 817c0398e94da9ec99c283794684320e https://www.encodeproject.org/files/ENCFF838LXI/@@download/ENCFF838LXI.bed.gz GRCh38 released low read depth ENCFF945HFZ bigBed narrowPeak optimal idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF838LXI 407404 ENCODE Processing Pipeline dd51da371246ba9f4f856d530a563254 https://www.encodeproject.org/files/ENCFF945HFZ/@@download/ENCFF945HFZ.bigBed GRCh38 released low read depth ENCFF191OQO bigBed narrowPeak conservative idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF535AMF 212008 ENCODE Processing Pipeline 66e1ae9aa848f851d5ad87607d65d518 https://www.encodeproject.org/files/ENCFF191OQO/@@download/ENCFF191OQO.bigBed hg19 released low read depth ENCFF065UFF bed narrowPeak optimal idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF001TDO, ENCFF804UPE, ENCFF833DXW, ENCFF836PMF 168014 ENCODE Processing Pipeline d14e3ffe1f613e32c10a0348cc8affca https://www.encodeproject.org/files/ENCFF065UFF/@@download/ENCFF065UFF.bed.gz hg19 released low read depth ENCFF535AMF bed narrowPeak conservative idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF001TDO, ENCFF804UPE, ENCFF833DXW, ENCFF836PMF 106527 ENCODE Processing Pipeline 861fceb0cf2ca1f8a688a75674bec606 https://www.encodeproject.org/files/ENCFF535AMF/@@download/ENCFF535AMF.bed.gz hg19 released low read depth ENCFF300EWL bigBed narrowPeak optimal idr thresholded peaks ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3, 4 ENCFF065UFF 350656 ENCODE Processing Pipeline fd7f526731b98a9d6ac1e60edca0b704 https://www.encodeproject.org/files/ENCFF300EWL/@@download/ENCFF300EWL.bigBed hg19 released low read depth ENCFF000YTZ bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YUJ 419308103 Michael Snyder, Stanford b034e58837f9eb8663aae2cd22c25383 https://www.encodeproject.org/files/ENCFF000YTZ/@@download/ENCFF000YTZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUA bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YUK 448131451 Michael Snyder, Stanford 3a70092886cc1fe9694837399e33c540 https://www.encodeproject.org/files/ENCFF000YUA/@@download/ENCFF000YUA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUB bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNV 1525994 Michael Snyder, Stanford 0b171cee7dd5fb087391f0dbf39c776e https://www.encodeproject.org/files/ENCFF000YUB/@@download/ENCFF000YUB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUD bigWig signal ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 309914304 Michael Snyder, Stanford f2cad733a0e1eb42ffb87ed0194f76f9 https://www.encodeproject.org/files/ENCFF000YUD/@@download/ENCFF000YUD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YUJ fastq reads ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 891715835 Michael Snyder, Stanford 832fd5a4cc0780cd76db0b3c1ba0e99a https://www.encodeproject.org/files/ENCFF000YUJ/@@download/ENCFF000YUJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUK fastq reads ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 911134596 Michael Snyder, Stanford 7562507902e9ffb3eb773c9726c64412 https://www.encodeproject.org/files/ENCFF000YUK/@@download/ENCFF000YUK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VNV bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 551098 Michael Snyder, Stanford 47edb8c708aa3e49b94b4b5aae4db4e7 https://www.encodeproject.org/files/ENCFF001VNV/@@download/ENCFF001VNV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CXF bed narrowPeak optimal idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 167844 ENCODE Consortium Analysis Working Group ad39164396d52a0f2553d28532d80f58 https://www.encodeproject.org/files/ENCFF002CXF/@@download/ENCFF002CXF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF649DXH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXF 446050 ENCODE Consortium 782b18e233935fe17f99ee6fc1b6fe94 https://www.encodeproject.org/files/ENCFF649DXH/@@download/ENCFF649DXH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF260VIR bam unfiltered alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUJ, ENCFF643CGH 1064490774 ENCODE Processing Pipeline 5cff3f215744e350ac073ea6fdcbb0f2 https://www.encodeproject.org/files/ENCFF260VIR/@@download/ENCFF260VIR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF726UVN bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUJ, ENCFF643CGH 638436900 ENCODE Processing Pipeline f51fd5cc0da310594840dc873e12145e https://www.encodeproject.org/files/ENCFF726UVN/@@download/ENCFF726UVN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF322OYY bam unfiltered alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUK, ENCFF643CGH 1118580690 ENCODE Processing Pipeline 53ce5bd760493e6fae0728ac1fd8a59a https://www.encodeproject.org/files/ENCFF322OYY/@@download/ENCFF322OYY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388QNA bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUK, ENCFF643CGH 719748956 ENCODE Processing Pipeline 69af2d10c943203020cf5e5c401fc963 https://www.encodeproject.org/files/ENCFF388QNA/@@download/ENCFF388QNA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF009RJG bam unfiltered alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUK, ENCFF807MUK 1112869309 ENCODE Processing Pipeline 6ba67422cd7117d97a5b45f85476369b https://www.encodeproject.org/files/ENCFF009RJG/@@download/ENCFF009RJG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946QFA bam unfiltered alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUJ, ENCFF807MUK 1059625134 ENCODE Processing Pipeline 7eaa49ca96df4d25b0c60cc542b52e5d https://www.encodeproject.org/files/ENCFF946QFA/@@download/ENCFF946QFA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF094XLP bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUJ, ENCFF807MUK 638865506 ENCODE Processing Pipeline 8ca71bfb977d134f7f990af016b99212 https://www.encodeproject.org/files/ENCFF094XLP/@@download/ENCFF094XLP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976PFK bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUK, ENCFF807MUK 720157305 ENCODE Processing Pipeline 888bffe649a940164ffdd258f037d7c4 https://www.encodeproject.org/files/ENCFF976PFK/@@download/ENCFF976PFK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF066HKT bigWig signal p-value ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF388QNA 524800621 ENCODE Processing Pipeline 02065f4135c4001b6a3c8e55746b0607 https://www.encodeproject.org/files/ENCFF066HKT/@@download/ENCFF066HKT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF408JMA bigWig signal p-value ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF726UVN 404850893 ENCODE Processing Pipeline da74dcb38d9000a92fa5c3de1cfd4c49 https://www.encodeproject.org/files/ENCFF408JMA/@@download/ENCFF408JMA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF520AFF bigWig signal p-value ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF388QNA, ENCFF726UVN 543671906 ENCODE Processing Pipeline 9886e7df7a3028049b1a86d873ebd042 https://www.encodeproject.org/files/ENCFF520AFF/@@download/ENCFF520AFF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF377NUR bigWig fold change over control ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF726UVN 356903309 ENCODE Processing Pipeline a2c9161ff93efb967e2a5c4ee2c178ac https://www.encodeproject.org/files/ENCFF377NUR/@@download/ENCFF377NUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF507OLB bigWig fold change over control ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF388QNA 380918773 ENCODE Processing Pipeline b1457da4919bc3e106fd4576ac6fc7b1 https://www.encodeproject.org/files/ENCFF507OLB/@@download/ENCFF507OLB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF084EQL bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332OJQ 10820479 ENCODE Processing Pipeline 2b8b99c3bfdfb7eabd0b52cd44d5f4c8 https://www.encodeproject.org/files/ENCFF084EQL/@@download/ENCFF084EQL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF918DNW bigWig fold change over control ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF388QNA, ENCFF726UVN 618936748 ENCODE Processing Pipeline ac504b0b848478490ea02890b5b5f309 https://www.encodeproject.org/files/ENCFF918DNW/@@download/ENCFF918DNW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF332OJQ bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF388QNA 4540403 ENCODE Processing Pipeline 5ed7d4caa3ebe1bd929c3fe6188b94d7 https://www.encodeproject.org/files/ENCFF332OJQ/@@download/ENCFF332OJQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF995LKI bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF726UVN 4372633 ENCODE Processing Pipeline 278c0604af419ebf0e405ac98cbcb14a https://www.encodeproject.org/files/ENCFF995LKI/@@download/ENCFF995LKI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF335WQW bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF677CNS 11244631 ENCODE Processing Pipeline 48c421b0c837ff52381253fbb633b7a4 https://www.encodeproject.org/files/ENCFF335WQW/@@download/ENCFF335WQW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF677CNS bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF388QNA, ENCFF726UVN 5350178 ENCODE Processing Pipeline 1cb8ce590f11480818c7e1bb1647442a https://www.encodeproject.org/files/ENCFF677CNS/@@download/ENCFF677CNS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF118HMK bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF995LKI 10637774 ENCODE Processing Pipeline d0ce92d097e37d4fa6755d70aa10bd72 https://www.encodeproject.org/files/ENCFF118HMK/@@download/ENCFF118HMK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF457COE bed narrowPeak conservative idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332OJQ, ENCFF419RSJ, ENCFF677CNS, ENCFF995LKI 155026 ENCODE Processing Pipeline 2248e533b5649bdaec1288dd8d001e48 https://www.encodeproject.org/files/ENCFF457COE/@@download/ENCFF457COE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527CRX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF457COE 329623 ENCODE Processing Pipeline 1d6b2e246db2c6283c5922e87458d00c https://www.encodeproject.org/files/ENCFF527CRX/@@download/ENCFF527CRX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF243QTL bed narrowPeak optimal idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332OJQ, ENCFF419RSJ, ENCFF677CNS, ENCFF995LKI 161340 ENCODE Processing Pipeline ef2162b321cb4db6098cbf3f2a634995 https://www.encodeproject.org/files/ENCFF243QTL/@@download/ENCFF243QTL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF669HFZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF243QTL 338731 ENCODE Processing Pipeline c75e934b435ca07f5803d7bb3972724b https://www.encodeproject.org/files/ENCFF669HFZ/@@download/ENCFF669HFZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF393MQL bigWig signal p-value ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094XLP, ENCFF710NTS, ENCFF976PFK 582394456 ENCODE Processing Pipeline d1e62158ab0744ee0e9d514f00ec8149 https://www.encodeproject.org/files/ENCFF393MQL/@@download/ENCFF393MQL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF069DOD bigWig fold change over control ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF094XLP, ENCFF710NTS 357901509 ENCODE Processing Pipeline 16357194e4be5bb4c3f6068b11b4df6e https://www.encodeproject.org/files/ENCFF069DOD/@@download/ENCFF069DOD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF120GUN bigWig fold change over control ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094XLP, ENCFF710NTS, ENCFF976PFK 623583850 ENCODE Processing Pipeline 1fb37caa15532e8d07714e52cb2bee46 https://www.encodeproject.org/files/ENCFF120GUN/@@download/ENCFF120GUN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF794QMW bigWig signal p-value ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF094XLP, ENCFF710NTS 415048204 ENCODE Processing Pipeline b98828809911f479f84bbf285d8325ea https://www.encodeproject.org/files/ENCFF794QMW/@@download/ENCFF794QMW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF492QMD bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF976PFK 4545903 ENCODE Processing Pipeline 0a0487aed9dc6fe659d246aa985ef4f2 https://www.encodeproject.org/files/ENCFF492QMD/@@download/ENCFF492QMD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459GCR bigWig signal p-value ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF976PFK 473634881 ENCODE Processing Pipeline 94f72579e5c4271e8b05c64a38cd2e30 https://www.encodeproject.org/files/ENCFF459GCR/@@download/ENCFF459GCR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF408TRC bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF094XLP, ENCFF710NTS 4419284 ENCODE Processing Pipeline 5feca8703d12480c372660f58565d18a https://www.encodeproject.org/files/ENCFF408TRC/@@download/ENCFF408TRC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF628ZYM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF413YYC 329461 ENCODE Processing Pipeline 706aed3b00d5bf909ab251a502808ba6 https://www.encodeproject.org/files/ENCFF628ZYM/@@download/ENCFF628ZYM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379LKU bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF400DMX 11243548 ENCODE Processing Pipeline 72c830912d16ffd01d1621bd0ab5e878 https://www.encodeproject.org/files/ENCFF379LKU/@@download/ENCFF379LKU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF413YYC bed narrowPeak conservative idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF400DMX, ENCFF408TRC, ENCFF492QMD 155800 ENCODE Processing Pipeline ed1b020541477c5e0885a38e35074cbd https://www.encodeproject.org/files/ENCFF413YYC/@@download/ENCFF413YYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF041UPE bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF492QMD 10816968 ENCODE Processing Pipeline 3c4be7e7a11071c0609f6e9c72723901 https://www.encodeproject.org/files/ENCFF041UPE/@@download/ENCFF041UPE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF969KDM bigBed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408TRC 10662555 ENCODE Processing Pipeline 834da580efee76268f51a2a989ce2a01 https://www.encodeproject.org/files/ENCFF969KDM/@@download/ENCFF969KDM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF829QNU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF970LCB 339357 ENCODE Processing Pipeline e7d156c78418f7154ce258827cd17477 https://www.encodeproject.org/files/ENCFF829QNU/@@download/ENCFF829QNU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF557DJU bigWig fold change over control ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF976PFK 381754635 ENCODE Processing Pipeline f87114f12af307199c4269a0f8ef858c https://www.encodeproject.org/files/ENCFF557DJU/@@download/ENCFF557DJU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF970LCB bed narrowPeak optimal idr thresholded peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF400DMX, ENCFF408TRC, ENCFF492QMD 161913 ENCODE Processing Pipeline 5fde622a545fc7d9f4edabddd920274c https://www.encodeproject.org/files/ENCFF970LCB/@@download/ENCFF970LCB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF400DMX bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094XLP, ENCFF710NTS, ENCFF976PFK 5355130 ENCODE Processing Pipeline 067c093be2af67e05fa64addf5f7ee7b https://www.encodeproject.org/files/ENCFF400DMX/@@download/ENCFF400DMX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WGJ bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WGX 474113513 Michael Snyder, Stanford f53ce82d7d265d978692b9f33021b99b https://www.encodeproject.org/files/ENCFF000WGJ/@@download/ENCFF000WGJ.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WGK bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFU 3827306 Michael Snyder, Stanford c1df79cf805f377102458a3fa7aaf135 https://www.encodeproject.org/files/ENCFF000WGK/@@download/ENCFF000WGK.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WGL bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WGW 395884406 Michael Snyder, Stanford 0b2173463b42dd711e5d50002fb9cfc0 https://www.encodeproject.org/files/ENCFF000WGL/@@download/ENCFF000WGL.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WGM bigWig signal ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 344372268 Michael Snyder, Stanford 8554e0b6704a57b3fcbb93947efae435 https://www.encodeproject.org/files/ENCFF000WGM/@@download/ENCFF000WGM.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WGW fastq reads ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 806330313 Michael Snyder, Stanford db88a7fc8d4e7ac3f22fd4dc0afddde3 https://www.encodeproject.org/files/ENCFF000WGW/@@download/ENCFF000WGW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WGX fastq reads ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 989164401 Michael Snyder, Stanford 39cf9528405df7b52844458020c3101b https://www.encodeproject.org/files/ENCFF000WGX/@@download/ENCFF000WGX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF001VFU bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1458801 Michael Snyder, Stanford ce36bc4458f8ca1d03d8f68f8a8bc630 https://www.encodeproject.org/files/ENCFF001VFU/@@download/ENCFF001VFU.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF002CPW bed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 478466 ENCODE Consortium Analysis Working Group 01f2af5399bd0b982e3d3b88e66168bc https://www.encodeproject.org/files/ENCFF002CPW/@@download/ENCFF002CPW.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF908ULD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPW 985755 ENCODE Consortium ee3820a8af648015a92ea0b732c0a10d https://www.encodeproject.org/files/ENCFF908ULD/@@download/ENCFF908ULD.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF418QOL bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF643CGH 838599281 ENCODE Processing Pipeline 740a3217ca246dbff48d2ead5dd8bfb4 https://www.encodeproject.org/files/ENCFF418QOL/@@download/ENCFF418QOL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF803OPC bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF643CGH 480760362 ENCODE Processing Pipeline 5cc256bc0c4076fe55898fb6520882ae https://www.encodeproject.org/files/ENCFF803OPC/@@download/ENCFF803OPC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF557VJE bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF643CGH 1023419292 ENCODE Processing Pipeline 67f1976790c3bb7b0e88d05db7d018bf https://www.encodeproject.org/files/ENCFF557VJE/@@download/ENCFF557VJE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF515QUC bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF643CGH 612143328 ENCODE Processing Pipeline 9c2d6e3684543b10a9e284e1062b6f6a https://www.encodeproject.org/files/ENCFF515QUC/@@download/ENCFF515QUC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF790BKQ bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF807MUK 835820493 ENCODE Processing Pipeline 7e8db67ddbffaf53d2b86d04ec503ce5 https://www.encodeproject.org/files/ENCFF790BKQ/@@download/ENCFF790BKQ.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF530MSA bam unfiltered alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF807MUK 1020315679 ENCODE Processing Pipeline dee5caa808b9e2b2ff13f147cf7c33bd https://www.encodeproject.org/files/ENCFF530MSA/@@download/ENCFF530MSA.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF780HMW bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF807MUK 612165360 ENCODE Processing Pipeline 8094fa9f81ae140cd792a6dfc09a7b26 https://www.encodeproject.org/files/ENCFF780HMW/@@download/ENCFF780HMW.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF737NXE bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF807MUK 478522616 ENCODE Processing Pipeline a99090c574b45c8b431e53b57f05ed85 https://www.encodeproject.org/files/ENCFF737NXE/@@download/ENCFF737NXE.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF420LVZ bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 1202287 ENCODE Processing Pipeline 9a03c7827ce76a74f9da2efe2a493131 https://www.encodeproject.org/files/ENCFF420LVZ/@@download/ENCFF420LVZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF494ONL bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF737NXE, ENCFF780HMW 193436625 ENCODE Processing Pipeline ac5e915eae8d3ee380b1f319b6da05a0 https://www.encodeproject.org/files/ENCFF494ONL/@@download/ENCFF494ONL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF833HQN bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 187690618 ENCODE Processing Pipeline 77aeafbdb8305f9d3d6f29dd8021c93a https://www.encodeproject.org/files/ENCFF833HQN/@@download/ENCFF833HQN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF221NBF bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 259206459 ENCODE Processing Pipeline 985a02aae5d2a526db64b519bc9c8378 https://www.encodeproject.org/files/ENCFF221NBF/@@download/ENCFF221NBF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF954TMQ bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 214224556 ENCODE Processing Pipeline de42257e7b7a2170ca0feeda80dfe95b https://www.encodeproject.org/files/ENCFF954TMQ/@@download/ENCFF954TMQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF649XXN bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF704WHY 10770415 ENCODE Processing Pipeline bfef2f014922bd0b7cd2819119776a98 https://www.encodeproject.org/files/ENCFF649XXN/@@download/ENCFF649XXN.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF046WGV bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 4561903 ENCODE Processing Pipeline ef41780b200cca0f8494cd0f0966947e https://www.encodeproject.org/files/ENCFF046WGV/@@download/ENCFF046WGV.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF704WHY bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF737NXE, ENCFF780HMW 4810779 ENCODE Processing Pipeline 79773cf4285bde62b184b4ee6170d762 https://www.encodeproject.org/files/ENCFF704WHY/@@download/ENCFF704WHY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF332VHB bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF046WGV 10368475 ENCODE Processing Pipeline ca67f4cb5c9a864840d23f4806d02b21 https://www.encodeproject.org/files/ENCFF332VHB/@@download/ENCFF332VHB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF631JFD bed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF046WGV, ENCFF420LVZ, ENCFF704WHY 194862 ENCODE Processing Pipeline 22cc3e3c719e82b0ed27ea44620cf424 https://www.encodeproject.org/files/ENCFF631JFD/@@download/ENCFF631JFD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF265YWY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF141SAU 1094529 ENCODE Processing Pipeline b2b687f6830f786f2512165aa4a9f004 https://www.encodeproject.org/files/ENCFF265YWY/@@download/ENCFF265YWY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF671NJF bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 230951206 ENCODE Processing Pipeline ab92e4a6a6c78f2167b2f7c9adf1a991 https://www.encodeproject.org/files/ENCFF671NJF/@@download/ENCFF671NJF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF639ZAX bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF737NXE, ENCFF780HMW 432316195 ENCODE Processing Pipeline cf4606dc2c6b1568a6384150dcc2572d https://www.encodeproject.org/files/ENCFF639ZAX/@@download/ENCFF639ZAX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF619TNA bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420LVZ 2551217 ENCODE Processing Pipeline b13c2dde1187c782f1750081da8d6568 https://www.encodeproject.org/files/ENCFF619TNA/@@download/ENCFF619TNA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF564ZYC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF631JFD 343484 ENCODE Processing Pipeline be9c81a57da421f4f476704fd8bae698 https://www.encodeproject.org/files/ENCFF564ZYC/@@download/ENCFF564ZYC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF141SAU bed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF046WGV, ENCFF420LVZ, ENCFF704WHY 660604 ENCODE Processing Pipeline 8b9eb2c39e56a1197433faf476328b10 https://www.encodeproject.org/files/ENCFF141SAU/@@download/ENCFF141SAU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF129YCR bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF515QUC 257662368 ENCODE Processing Pipeline 0d26eac27c389d921c22915ae2744302 https://www.encodeproject.org/files/ENCFF129YCR/@@download/ENCFF129YCR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF914GNY bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF515QUC, ENCFF803OPC 193621715 ENCODE Processing Pipeline ab535b0139ce852f529e67416ae7a62a https://www.encodeproject.org/files/ENCFF914GNY/@@download/ENCFF914GNY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF932ZQY bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF803OPC 231355979 ENCODE Processing Pipeline 9368fc2e1a2f6b68ab465e847903288f https://www.encodeproject.org/files/ENCFF932ZQY/@@download/ENCFF932ZQY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF295LDK bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF515QUC 1286153 ENCODE Processing Pipeline 20a532c43c31db2ce278eeae1ff4049f https://www.encodeproject.org/files/ENCFF295LDK/@@download/ENCFF295LDK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF787MDS bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070IOT 10400931 ENCODE Processing Pipeline 2d89c3790ee620f7dc810611040422ff https://www.encodeproject.org/files/ENCFF787MDS/@@download/ENCFF787MDS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF114TBN bed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070IOT, ENCFF295LDK, ENCFF419RSJ, ENCFF664ASN 208931 ENCODE Processing Pipeline 6484d6efcdf031e6d1c15fdadb6abbe1 https://www.encodeproject.org/files/ENCFF114TBN/@@download/ENCFF114TBN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF032DJE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114TBN 362014 ENCODE Processing Pipeline 1eba8789ac107ba1e7bf9db5c808fe0d https://www.encodeproject.org/files/ENCFF032DJE/@@download/ENCFF032DJE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF421BOL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF193POQ 1101619 ENCODE Processing Pipeline 2a9ac9e2f6e00f9b40f285b876444315 https://www.encodeproject.org/files/ENCFF421BOL/@@download/ENCFF421BOL.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF267GHZ bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF515QUC 187718109 ENCODE Processing Pipeline 92650ad9646982b31dd41e693f62c70d https://www.encodeproject.org/files/ENCFF267GHZ/@@download/ENCFF267GHZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF070IOT bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF803OPC 4554896 ENCODE Processing Pipeline 02add92a304067216b398cfd5624c617 https://www.encodeproject.org/files/ENCFF070IOT/@@download/ENCFF070IOT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF928QSB bigWig signal p-value ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF803OPC 215444284 ENCODE Processing Pipeline 74666e3d3685f37fce6ba629c8bd0300 https://www.encodeproject.org/files/ENCFF928QSB/@@download/ENCFF928QSB.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF972SJN bigWig fold change over control ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF515QUC, ENCFF803OPC 432879133 ENCODE Processing Pipeline b3463fce1e2fea771adf7c336135a297 https://www.encodeproject.org/files/ENCFF972SJN/@@download/ENCFF972SJN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF664ASN bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF515QUC, ENCFF803OPC 4808025 ENCODE Processing Pipeline 6a0087191598867661ad5f2774a88ff8 https://www.encodeproject.org/files/ENCFF664ASN/@@download/ENCFF664ASN.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF311LJL bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295LDK 2748889 ENCODE Processing Pipeline 9bcd2ed02a494fa199002a0715c5bbaa https://www.encodeproject.org/files/ENCFF311LJL/@@download/ENCFF311LJL.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF348WDF bigBed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF664ASN 10773119 ENCODE Processing Pipeline d94d4a587bea4e126590c3cf2921a375 https://www.encodeproject.org/files/ENCFF348WDF/@@download/ENCFF348WDF.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF193POQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF070IOT, ENCFF295LDK, ENCFF419RSJ, ENCFF664ASN 664411 ENCODE Processing Pipeline 0adc6bc4ed7a8d55d148205247cf28d9 https://www.encodeproject.org/files/ENCFF193POQ/@@download/ENCFF193POQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000VZF bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000VZN 302546889 Michael Snyder, Stanford f4f6cd23620e64e1d11ef30807a97f65 https://www.encodeproject.org/files/ENCFF000VZF/@@download/ENCFF000VZF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZG bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000VZW 531699913 Michael Snyder, Stanford 6cef37b54577399d804794bd49f4f946 https://www.encodeproject.org/files/ENCFF000VZG/@@download/ENCFF000VZG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZH bigBed narrowPeak peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VET 381124 Michael Snyder, Stanford c2c3f6eef9212ebb5b6812f46ddbc627 https://www.encodeproject.org/files/ENCFF000VZH/@@download/ENCFF000VZH.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZI bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 3 ENCFF000WAK 776778422 Michael Snyder, Stanford 6bbdb30bedc30b87a0fea555bbca64bf https://www.encodeproject.org/files/ENCFF000VZI/@@download/ENCFF000VZI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZJ bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 4 ENCFF000WBF 818431727 Michael Snyder, Stanford 6da37769c2ef666c4e8150817e89ab36 https://www.encodeproject.org/files/ENCFF000VZJ/@@download/ENCFF000VZJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZM bigWig signal ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 457788624 Michael Snyder, Stanford 949fe058283b7e197f02b4627ed63cf9 https://www.encodeproject.org/files/ENCFF000VZM/@@download/ENCFF000VZM.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000VZN fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 1 1 28 single-ended 237958534 Michael Snyder, Stanford 35029320fbecc6b33fde639a063b2440 https://www.encodeproject.org/files/ENCFF000VZN/@@download/ENCFF000VZN.fastq.gz Illumina Genome Analyzer /files/ENCFF000VXH/ released biological replicates with identical biosample insufficient read length ENCFF000VZW fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 2 1 28 single-ended 414446290 Michael Snyder, Stanford b0d934eec790fe6414f07e1a1e9903ff https://www.encodeproject.org/files/ENCFF000VZW/@@download/ENCFF000VZW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VXG/ released biological replicates with identical biosample insufficient read length ENCFF000WAK fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 3 1 28 single-ended 593919805 Michael Snyder, Stanford 447b804ba647faea4f99e1243c8bcbf8 https://www.encodeproject.org/files/ENCFF000WAK/@@download/ENCFF000WAK.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WBF fastq reads ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 4 1 28 single-ended 646360175 Michael Snyder, Stanford 7abf9f9908e538f1438594dd0d89ad37 https://www.encodeproject.org/files/ENCFF000WBF/@@download/ENCFF000WBF.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VET bed narrowPeak peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 153709 Michael Snyder, Stanford 4bf824cdf291406a4dc5d783a5b63a5c https://www.encodeproject.org/files/ENCFF001VET/@@download/ENCFF001VET.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CPA bed narrowPeak optimal idr thresholded peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 414083 ENCODE Consortium Analysis Working Group 536e19e1527ff5f05e1cbf59582972ff https://www.encodeproject.org/files/ENCFF002CPA/@@download/ENCFF002CPA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF956GSR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CPA 933360 ENCODE Consortium fb8841fde7ea717da21ac78b9e42182b https://www.encodeproject.org/files/ENCFF956GSR/@@download/ENCFF956GSR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000QAX bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QBF 461040459 Richard Myers, HAIB d53c42e03c723ac540e56a5f1193a944 https://www.encodeproject.org/files/ENCFF000QAX/@@download/ENCFF000QAX.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF000QAY bigBed broadPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKD 541725 Richard Myers, HAIB ed0817ec90e1f65d8144954e4f881773 https://www.encodeproject.org/files/ENCFF000QAY/@@download/ENCFF000QAY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF000QAZ bigBed broadPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKE 232106 Richard Myers, HAIB 0d8d77ecebc607dc77ed6a93d70ff9bf https://www.encodeproject.org/files/ENCFF000QAZ/@@download/ENCFF000QAZ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF000QBA bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QBN 1362499051 Richard Myers, HAIB f8b51958aa98d32ffda8d3011a314c8e https://www.encodeproject.org/files/ENCFF000QBA/@@download/ENCFF000QBA.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF000QBB bigWig raw signal ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 13966513 Richard Myers, HAIB 2ed5d2ae3b7739cb1df738f2e836b81f https://www.encodeproject.org/files/ENCFF000QBB/@@download/ENCFF000QBB.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF000QBE bigWig raw signal ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 16553009 Richard Myers, HAIB 07c6c923980f4df1d69bd1aafaabe99e https://www.encodeproject.org/files/ENCFF000QBE/@@download/ENCFF000QBE.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF000QBF fastq reads ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 447759713 Richard Myers, HAIB b3ace8601ce551650564ee7d1108fb6e https://www.encodeproject.org/files/ENCFF000QBF/@@download/ENCFF000QBF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF000QBN fastq reads ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1352172692 Richard Myers, HAIB c9a0a87687ad5a1b3bd8f963bfd76aaf https://www.encodeproject.org/files/ENCFF000QBN/@@download/ENCFF000QBN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF001UKD bed broadPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 312252 Richard Myers, HAIB 482b6e50d699de0d87427a0233cf77c5 https://www.encodeproject.org/files/ENCFF001UKD/@@download/ENCFF001UKD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF001UKE bed broadPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 91965 Richard Myers, HAIB ac13d7762a01bf2f68690548a8da33ac https://www.encodeproject.org/files/ENCFF001UKE/@@download/ENCFF001UKE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF002CMB bed narrowPeak optimal idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 128678 ENCODE Consortium Analysis Working Group fe645c91ac33d4e3222a007677d53650 https://www.encodeproject.org/files/ENCFF002CMB/@@download/ENCFF002CMB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF231XBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMB 300381 ENCODE Consortium 496ca2695cb7664b36b2857e39da240e https://www.encodeproject.org/files/ENCFF231XBJ/@@download/ENCFF231XBJ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF051OWD bam unfiltered alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBF, ENCFF643CGH 548159008 ENCODE Processing Pipeline 897598389cc9b3aba7a9e2288116e403 https://www.encodeproject.org/files/ENCFF051OWD/@@download/ENCFF051OWD.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF089JIC bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBF, ENCFF643CGH 186470025 ENCODE Processing Pipeline 7c10ea44ed47bb0c47334d1c8bd75412 https://www.encodeproject.org/files/ENCFF089JIC/@@download/ENCFF089JIC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF329KMX bam unfiltered alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QBN, ENCFF643CGH 1747565830 ENCODE Processing Pipeline 022970806714d2c5304f8278a7bcce66 https://www.encodeproject.org/files/ENCFF329KMX/@@download/ENCFF329KMX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF445ONF bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QBN, ENCFF643CGH 929183097 ENCODE Processing Pipeline aea0061108efa217a4245095fc978e5e https://www.encodeproject.org/files/ENCFF445ONF/@@download/ENCFF445ONF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF522EVL bam unfiltered alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBF, ENCFF807MUK 546854667 ENCODE Processing Pipeline 1733ab6225a74082f202b1a70e8d969f https://www.encodeproject.org/files/ENCFF522EVL/@@download/ENCFF522EVL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF223OSD bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBF, ENCFF807MUK 186675455 ENCODE Processing Pipeline 716cc41f3ddaa5e4b271843ab07be7d0 https://www.encodeproject.org/files/ENCFF223OSD/@@download/ENCFF223OSD.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF045IHR bam unfiltered alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QBN, ENCFF807MUK 1741404837 ENCODE Processing Pipeline dcc2359a3136cb6eab09a2f32915f005 https://www.encodeproject.org/files/ENCFF045IHR/@@download/ENCFF045IHR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF379XXZ bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QBN, ENCFF807MUK 929699971 ENCODE Processing Pipeline 964a9d9f9ffdb00a58498f0dbcd5be60 https://www.encodeproject.org/files/ENCFF379XXZ/@@download/ENCFF379XXZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF271TQY bigWig signal p-value ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF089JIC, ENCFF913HVS 342995693 ENCODE Processing Pipeline f687b28509cbac5da346ed64eb3cbbc2 https://www.encodeproject.org/files/ENCFF271TQY/@@download/ENCFF271TQY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF585CHH bigWig signal p-value ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF445ONF, ENCFF913HVS 468601388 ENCODE Processing Pipeline a5f8f250227b47facd8cd9cfc973c785 https://www.encodeproject.org/files/ENCFF585CHH/@@download/ENCFF585CHH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF610LSY bigWig signal p-value ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089JIC, ENCFF445ONF, ENCFF913HVS 478026052 ENCODE Processing Pipeline 6d23cb97eb61a74d7616c07778678bc2 https://www.encodeproject.org/files/ENCFF610LSY/@@download/ENCFF610LSY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF888SDP bigWig fold change over control ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF089JIC, ENCFF913HVS 104124734 ENCODE Processing Pipeline 491770c5d52448c9786fe9568e3c7704 https://www.encodeproject.org/files/ENCFF888SDP/@@download/ENCFF888SDP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF486GYP bigWig fold change over control ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF445ONF, ENCFF913HVS 402274321 ENCODE Processing Pipeline 2541ca2081557f02836c6e787156dc79 https://www.encodeproject.org/files/ENCFF486GYP/@@download/ENCFF486GYP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF661GQI bigBed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF855WTK 10919322 ENCODE Processing Pipeline 2bb02ae73bd10c33a8cab61b807c56f2 https://www.encodeproject.org/files/ENCFF661GQI/@@download/ENCFF661GQI.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF190SJX bed narrowPeak conservative idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF549VQK, ENCFF843QGK, ENCFF855WTK 95504 ENCODE Processing Pipeline aee56f6071193cdb13457954e3c5612d https://www.encodeproject.org/files/ENCFF190SJX/@@download/ENCFF190SJX.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF855WTK bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089JIC, ENCFF445ONF, ENCFF913HVS 5089601 ENCODE Processing Pipeline 6b47f982246effb83d4ad78fc9fc45d3 https://www.encodeproject.org/files/ENCFF855WTK/@@download/ENCFF855WTK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF797HUI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF190SJX 205738 ENCODE Processing Pipeline 53685880700ed765d8873d43d4a16d9f https://www.encodeproject.org/files/ENCFF797HUI/@@download/ENCFF797HUI.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF741IMY bed narrowPeak optimal idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF549VQK, ENCFF843QGK, ENCFF855WTK 165026 ENCODE Processing Pipeline 15bb764a113181237eaeb47dc5b28201 https://www.encodeproject.org/files/ENCFF741IMY/@@download/ENCFF741IMY.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF549VQK bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF089JIC, ENCFF913HVS 2721328 ENCODE Processing Pipeline a02132237098f2203b653a5f2fc3d39d https://www.encodeproject.org/files/ENCFF549VQK/@@download/ENCFF549VQK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF574XDI bigBed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF549VQK 6177009 ENCODE Processing Pipeline 78efa49b57336f5d5dcbc1dd2ed2e8a7 https://www.encodeproject.org/files/ENCFF574XDI/@@download/ENCFF574XDI.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF843QGK bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF445ONF, ENCFF913HVS 4381672 ENCODE Processing Pipeline c77f0375d783c86183330629b0893b20 https://www.encodeproject.org/files/ENCFF843QGK/@@download/ENCFF843QGK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF333RXK bigBed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF843QGK 10692581 ENCODE Processing Pipeline 2161b9602d88eb1ef6ffd5423f3406e5 https://www.encodeproject.org/files/ENCFF333RXK/@@download/ENCFF333RXK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF797QCQ bigWig fold change over control ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089JIC, ENCFF445ONF, ENCFF913HVS 467470049 ENCODE Processing Pipeline 04fdcd38eccea40f496387dfab2c9bc6 https://www.encodeproject.org/files/ENCFF797QCQ/@@download/ENCFF797QCQ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF682PLY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF741IMY 350323 ENCODE Processing Pipeline 9cbfa8f95faa970909fc2b00099d365a https://www.encodeproject.org/files/ENCFF682PLY/@@download/ENCFF682PLY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF381RFT bigWig signal p-value ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF223OSD, ENCFF701KUD 304981874 ENCODE Processing Pipeline 665d541fe382854b0981a48dfd2acc79 https://www.encodeproject.org/files/ENCFF381RFT/@@download/ENCFF381RFT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF690AHJ bigWig fold change over control ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF223OSD, ENCFF701KUD 104097676 ENCODE Processing Pipeline d5eb5ae7dc2eb63a94348ea3896aa227 https://www.encodeproject.org/files/ENCFF690AHJ/@@download/ENCFF690AHJ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF665LTH bigWig signal p-value ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379XXZ, ENCFF701KUD 468896595 ENCODE Processing Pipeline 1f0e22e836011539d517d502c39924b5 https://www.encodeproject.org/files/ENCFF665LTH/@@download/ENCFF665LTH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF584FVS bigWig signal p-value ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223OSD, ENCFF379XXZ, ENCFF701KUD 476887754 ENCODE Processing Pipeline f013f133580827516599a1b357aaa205 https://www.encodeproject.org/files/ENCFF584FVS/@@download/ENCFF584FVS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF699LAX bigWig fold change over control ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379XXZ, ENCFF701KUD 402236508 ENCODE Processing Pipeline a0f4b4dcfbc54ec79bebb35da4e64c1d https://www.encodeproject.org/files/ENCFF699LAX/@@download/ENCFF699LAX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF002SNM bigWig fold change over control ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223OSD, ENCFF379XXZ, ENCFF701KUD 462900642 ENCODE Processing Pipeline e33fde0d834b5b6f336af6ad8ca0506a https://www.encodeproject.org/files/ENCFF002SNM/@@download/ENCFF002SNM.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF735NAF bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF223OSD, ENCFF701KUD 2621077 ENCODE Processing Pipeline 2a64b523b1acf836ce4e073673ed2e2c https://www.encodeproject.org/files/ENCFF735NAF/@@download/ENCFF735NAF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF336UZW bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379XXZ, ENCFF701KUD 4384689 ENCODE Processing Pipeline f9bf48178659d146a8e8aa48aae8e4c9 https://www.encodeproject.org/files/ENCFF336UZW/@@download/ENCFF336UZW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF246ENE bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223OSD, ENCFF379XXZ, ENCFF701KUD 5090337 ENCODE Processing Pipeline 75f9045a738cef7943860b97401736a8 https://www.encodeproject.org/files/ENCFF246ENE/@@download/ENCFF246ENE.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF062DAE bigBed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF735NAF 5953970 ENCODE Processing Pipeline ab39c0e3e264c2e043609aa135eb595a https://www.encodeproject.org/files/ENCFF062DAE/@@download/ENCFF062DAE.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF897MUT bigBed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336UZW 10709958 ENCODE Processing Pipeline 84f45fbefa2d511cab22eec31a2fd821 https://www.encodeproject.org/files/ENCFF897MUT/@@download/ENCFF897MUT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF189ZAI bigBed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF246ENE 10913615 ENCODE Processing Pipeline 59566f2d1ab21c686356562c2766d938 https://www.encodeproject.org/files/ENCFF189ZAI/@@download/ENCFF189ZAI.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF809VBW bed narrowPeak conservative idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF246ENE, ENCFF336UZW, ENCFF735NAF 95577 ENCODE Processing Pipeline 5f2885e39e622a512f5b91b19171ba4d https://www.encodeproject.org/files/ENCFF809VBW/@@download/ENCFF809VBW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF074FEW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809VBW 205249 ENCODE Processing Pipeline 4a13b7350a70da7be3515ea1991e42cf https://www.encodeproject.org/files/ENCFF074FEW/@@download/ENCFF074FEW.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF667HLC bed narrowPeak optimal idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF246ENE, ENCFF336UZW, ENCFF735NAF 160465 ENCODE Processing Pipeline ee3222ea4ba9e0e28d04252bf3caeb15 https://www.encodeproject.org/files/ENCFF667HLC/@@download/ENCFF667HLC.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF913WUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF667HLC 343595 ENCODE Processing Pipeline 7e1b320bde50986ab7d3721c722450e0 https://www.encodeproject.org/files/ENCFF913WUJ/@@download/ENCFF913WUJ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF000NHJ bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NHV 443386970 Richard Myers, HAIB 82621bc9a0f6f5aff203a938fcfb8cb5 https://www.encodeproject.org/files/ENCFF000NHJ/@@download/ENCFF000NHJ.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000NHK bigBed broadPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TTR 346267 Richard Myers, HAIB e4d27d82343a85ef83950792d91819d4 https://www.encodeproject.org/files/ENCFF000NHK/@@download/ENCFF000NHK.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000NHL bigBed broadPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TTS 100657 Richard Myers, HAIB 9922d274854bc8e494abbb76d04dbec2 https://www.encodeproject.org/files/ENCFF000NHL/@@download/ENCFF000NHL.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000NHN bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NHY 1823535677 Richard Myers, HAIB 35636a63a087f3a74d72575fcb5bb4b1 https://www.encodeproject.org/files/ENCFF000NHN/@@download/ENCFF000NHN.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000NHO bigWig raw signal ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 26996531 Richard Myers, HAIB 4397442ab89425398b27cc788597b3a1 https://www.encodeproject.org/files/ENCFF000NHO/@@download/ENCFF000NHO.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000NHQ bigWig raw signal ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 9856577 Richard Myers, HAIB 36310fae2015033960d46cc2f6357183 https://www.encodeproject.org/files/ENCFF000NHQ/@@download/ENCFF000NHQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000NHV fastq reads ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1271663267 Richard Myers, HAIB 7cd71bc1f29f8a7a850a4772729f9f9b https://www.encodeproject.org/files/ENCFF000NHV/@@download/ENCFF000NHV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000NHY fastq reads ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1818683208 Richard Myers, HAIB 89d632bdc39c37a41ecb6ffac8ed4530 https://www.encodeproject.org/files/ENCFF000NHY/@@download/ENCFF000NHY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF001TTR bed broadPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 182425 Richard Myers, HAIB ea6e3ccbac867e4a0b2b77c6c7020d6c https://www.encodeproject.org/files/ENCFF001TTR/@@download/ENCFF001TTR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001TTS bed broadPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 25666 Richard Myers, HAIB bc5c13fa241de7419e42673cf5a06724 https://www.encodeproject.org/files/ENCFF001TTS/@@download/ENCFF001TTS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CGA bed narrowPeak optimal idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 214826 ENCODE Consortium Analysis Working Group e55575f1e1335ada6952246bd80535a1 https://www.encodeproject.org/files/ENCFF002CGA/@@download/ENCFF002CGA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF163TTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGA 564584 ENCODE Consortium 4e4b7a0737682ecc93b5f62062f76c3f https://www.encodeproject.org/files/ENCFF163TTA/@@download/ENCFF163TTA.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF573ZKI bam unfiltered alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHV, ENCFF643CGH 1551558981 ENCODE Processing Pipeline c8bd5a57974396e195962e9713538235 https://www.encodeproject.org/files/ENCFF573ZKI/@@download/ENCFF573ZKI.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF887OBL bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHV, ENCFF643CGH 887469491 ENCODE Processing Pipeline a40936bbf06fd5147cee95edab2f33e5 https://www.encodeproject.org/files/ENCFF887OBL/@@download/ENCFF887OBL.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF313TEK bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHY, ENCFF643CGH 976394281 ENCODE Processing Pipeline aeb1d0a2a0b03c75ccf363930b5d15a3 https://www.encodeproject.org/files/ENCFF313TEK/@@download/ENCFF313TEK.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF934YHX bam unfiltered alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHY, ENCFF643CGH 1986537461 ENCODE Processing Pipeline e87117985ec4970c2ac81605f8f1f576 https://www.encodeproject.org/files/ENCFF934YHX/@@download/ENCFF934YHX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF641TAY bam unfiltered alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHY, ENCFF807MUK 1978116310 ENCODE Processing Pipeline 053f14f386117fc23961cf30a4fe4e95 https://www.encodeproject.org/files/ENCFF641TAY/@@download/ENCFF641TAY.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF063CUX bam unfiltered alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHV, ENCFF807MUK 1545984171 ENCODE Processing Pipeline 1ad92435fa3aea21ced4d3889d0829c5 https://www.encodeproject.org/files/ENCFF063CUX/@@download/ENCFF063CUX.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF225AWF bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHV, ENCFF807MUK 887667431 ENCODE Processing Pipeline 883b4fa1b59093541292b91a0376a36c https://www.encodeproject.org/files/ENCFF225AWF/@@download/ENCFF225AWF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF535SPI bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHY, ENCFF807MUK 976440852 ENCODE Processing Pipeline b467bab79361638347c1afaaf2d6cd62 https://www.encodeproject.org/files/ENCFF535SPI/@@download/ENCFF535SPI.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF580WSM bigWig signal p-value ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF887OBL 669986450 ENCODE Processing Pipeline 2f48ae89648efe62cb29d4ef2d0fbc2b https://www.encodeproject.org/files/ENCFF580WSM/@@download/ENCFF580WSM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF712FKS bigWig signal p-value ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF313TEK, ENCFF656HEF 512278780 ENCODE Processing Pipeline 21eca28d351c64f3f31e4bdadbccb30f https://www.encodeproject.org/files/ENCFF712FKS/@@download/ENCFF712FKS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF053MVA bigWig signal p-value ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313TEK, ENCFF656HEF, ENCFF887OBL 861918825 ENCODE Processing Pipeline 1297822f95863ee05eabcc57fca541ff https://www.encodeproject.org/files/ENCFF053MVA/@@download/ENCFF053MVA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF925DJC bigWig fold change over control ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF887OBL 550119323 ENCODE Processing Pipeline 50a6c017ac29d4730b86a65f82042ee3 https://www.encodeproject.org/files/ENCFF925DJC/@@download/ENCFF925DJC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF941BCJ bigWig fold change over control ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF313TEK, ENCFF656HEF 453100132 ENCODE Processing Pipeline 85ebfec716c75f79efc8da97af2233b9 https://www.encodeproject.org/files/ENCFF941BCJ/@@download/ENCFF941BCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF743OPE bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF313TEK, ENCFF656HEF 4739304 ENCODE Processing Pipeline d8d962dfb9f0d401e22ef426a7801a29 https://www.encodeproject.org/files/ENCFF743OPE/@@download/ENCFF743OPE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF649XJK bigBed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF306TFR 13031473 ENCODE Processing Pipeline 39db1ff8c7d326113b81b884bc6c3615 https://www.encodeproject.org/files/ENCFF649XJK/@@download/ENCFF649XJK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF618STH bigWig fold change over control ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313TEK, ENCFF656HEF, ENCFF887OBL 872408881 ENCODE Processing Pipeline d83ee5d775c3a42dbfd720d2578c65b9 https://www.encodeproject.org/files/ENCFF618STH/@@download/ENCFF618STH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF306TFR bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF887OBL 6310615 ENCODE Processing Pipeline a5963044a8402479f02fd59321a02694 https://www.encodeproject.org/files/ENCFF306TFR/@@download/ENCFF306TFR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF479NTI bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313TEK, ENCFF656HEF, ENCFF887OBL 6767311 ENCODE Processing Pipeline f367e1bd5d9d81de9d2c78645ed2bd1c https://www.encodeproject.org/files/ENCFF479NTI/@@download/ENCFF479NTI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF886KDK bed narrowPeak optimal idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF306TFR, ENCFF419RSJ, ENCFF479NTI, ENCFF743OPE 303699 ENCODE Processing Pipeline a709217d99f3705d7b0ccc08c73499e1 https://www.encodeproject.org/files/ENCFF886KDK/@@download/ENCFF886KDK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF132BYW bigBed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF479NTI 13247942 ENCODE Processing Pipeline 08daceaa68e4163be81cd8925c7cac51 https://www.encodeproject.org/files/ENCFF132BYW/@@download/ENCFF132BYW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF205ZPE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF886KDK 766357 ENCODE Processing Pipeline 709771b0a33bddf39856dd93b56211c1 https://www.encodeproject.org/files/ENCFF205ZPE/@@download/ENCFF205ZPE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF044AQT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF353WKC 556463 ENCODE Processing Pipeline 8ff18b9d9fb653824f1883c185724170 https://www.encodeproject.org/files/ENCFF044AQT/@@download/ENCFF044AQT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF750SDQ bigBed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF743OPE 11094785 ENCODE Processing Pipeline ea8b572940578dd73734c0c23f52feb3 https://www.encodeproject.org/files/ENCFF750SDQ/@@download/ENCFF750SDQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF353WKC bed narrowPeak conservative idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF306TFR, ENCFF419RSJ, ENCFF479NTI, ENCFF743OPE 197108 ENCODE Processing Pipeline 2bda3bc942b5ba57a68099aa68f1b6f0 https://www.encodeproject.org/files/ENCFF353WKC/@@download/ENCFF353WKC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF243ZJL bigWig fold change over control ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225AWF, ENCFF864UEQ 548428020 ENCODE Processing Pipeline 9a84a4a4b85f2a5a879687a9058b0886 https://www.encodeproject.org/files/ENCFF243ZJL/@@download/ENCFF243ZJL.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF460UFX bigWig signal p-value ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF535SPI, ENCFF864UEQ 546229320 ENCODE Processing Pipeline 4e0752755192755cc8dd12453c95df98 https://www.encodeproject.org/files/ENCFF460UFX/@@download/ENCFF460UFX.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF066VMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF359EYT 553879 ENCODE Processing Pipeline afd0c22cbd3ab5c521af1be861b59868 https://www.encodeproject.org/files/ENCFF066VMM/@@download/ENCFF066VMM.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF285XTV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF747LKL 770494 ENCODE Processing Pipeline 02f6e68635aa803b259624e6ffcb93fb https://www.encodeproject.org/files/ENCFF285XTV/@@download/ENCFF285XTV.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF471WSJ bigWig signal p-value ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225AWF, ENCFF864UEQ 598911189 ENCODE Processing Pipeline f95eb3880fe3784401f920328774ebca https://www.encodeproject.org/files/ENCFF471WSJ/@@download/ENCFF471WSJ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF371XXQ bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF535SPI, ENCFF864UEQ 4741604 ENCODE Processing Pipeline a8482b3e486619615fa68bf6cf9504ed https://www.encodeproject.org/files/ENCFF371XXQ/@@download/ENCFF371XXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF368WVJ bigWig fold change over control ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF535SPI, ENCFF864UEQ 453502123 ENCODE Processing Pipeline 969793e8a739222f515df8e573e7331d https://www.encodeproject.org/files/ENCFF368WVJ/@@download/ENCFF368WVJ.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF747LKL bed narrowPeak optimal idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF371XXQ, ENCFF515ZED, ENCFF606JSI 306040 ENCODE Processing Pipeline be3c3a4fe3dfd0512da67a296562eff7 https://www.encodeproject.org/files/ENCFF747LKL/@@download/ENCFF747LKL.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF711ZDT bigWig signal p-value ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF225AWF, ENCFF535SPI, ENCFF864UEQ 859300918 ENCODE Processing Pipeline eb3b6bafafc344309a7f038596dc5d80 https://www.encodeproject.org/files/ENCFF711ZDT/@@download/ENCFF711ZDT.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF515ZED bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225AWF, ENCFF864UEQ 6303636 ENCODE Processing Pipeline 9604b508b4449dfdef87a11d37edcb16 https://www.encodeproject.org/files/ENCFF515ZED/@@download/ENCFF515ZED.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF606JSI bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF225AWF, ENCFF535SPI, ENCFF864UEQ 6770915 ENCODE Processing Pipeline 230b1525e0e58d45d622d0978ac85975 https://www.encodeproject.org/files/ENCFF606JSI/@@download/ENCFF606JSI.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF179BCW bigBed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF515ZED 13044007 ENCODE Processing Pipeline dc30ef4d8747fc229ff7551de00dbf65 https://www.encodeproject.org/files/ENCFF179BCW/@@download/ENCFF179BCW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF794LJC bigBed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF371XXQ 11089529 ENCODE Processing Pipeline e62d348561bf012b6fd13a8c20335dcd https://www.encodeproject.org/files/ENCFF794LJC/@@download/ENCFF794LJC.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF085GPD bigBed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF606JSI 13243332 ENCODE Processing Pipeline c4c6734f39254c682ef26f5818c9b381 https://www.encodeproject.org/files/ENCFF085GPD/@@download/ENCFF085GPD.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF359EYT bed narrowPeak conservative idr thresholded peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF371XXQ, ENCFF515ZED, ENCFF606JSI 196253 ENCODE Processing Pipeline e195d3b46d3988ae268a1376fabcd5c3 https://www.encodeproject.org/files/ENCFF359EYT/@@download/ENCFF359EYT.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF378WAG bigWig fold change over control ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF225AWF, ENCFF535SPI, ENCFF864UEQ 869348628 ENCODE Processing Pipeline be157cdb298e0c5b38b3ef2ee746644b https://www.encodeproject.org/files/ENCFF378WAG/@@download/ENCFF378WAG.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF000NJN bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NKG 1756087630 Richard Myers, HAIB 60c98e132c7ca02402917622b6721fe3 https://www.encodeproject.org/files/ENCFF000NJN/@@download/ENCFF000NJN.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NJO bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NKB 1725538252 Richard Myers, HAIB f50db72090bfff5fd585de86fbafec14 https://www.encodeproject.org/files/ENCFF000NJO/@@download/ENCFF000NJO.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NJP bigBed broadPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TUF 295001 Richard Myers, HAIB 4439a403eba486a13210855e438f5db7 https://www.encodeproject.org/files/ENCFF000NJP/@@download/ENCFF000NJP.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NJQ bigBed broadPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TUG 227285 Richard Myers, HAIB 09cb6171ea439cba8e0a4f16ebd49af2 https://www.encodeproject.org/files/ENCFF000NJQ/@@download/ENCFF000NJQ.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NJR bigWig raw signal ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 1 8521124 Richard Myers, HAIB 3fe8a2c70865bc61c1bb16a891eebcda https://www.encodeproject.org/files/ENCFF000NJR/@@download/ENCFF000NJR.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000NJT bigWig raw signal ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 1 9316410 Richard Myers, HAIB 67f16863776d4a1c51531181268793a0 https://www.encodeproject.org/files/ENCFF000NJT/@@download/ENCFF000NJT.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000NKB fastq reads ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1652316950 Richard Myers, HAIB 5508e17a73e7765fce6261cfcc20b5dd https://www.encodeproject.org/files/ENCFF000NKB/@@download/ENCFF000NKB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF000NKG fastq reads ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1726523121 Richard Myers, HAIB bcbed91534768ecff21971c6719d05ec https://www.encodeproject.org/files/ENCFF000NKG/@@download/ENCFF000NKG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF001TUF bed broadPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 1 127739 Richard Myers, HAIB 0a4ea8ae6db74d987f9563e431ed7455 https://www.encodeproject.org/files/ENCFF001TUF/@@download/ENCFF001TUF.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF001TUG bed broadPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 1 89431 Richard Myers, HAIB ba8d968000674e0dff1adfbbd559c116 https://www.encodeproject.org/files/ENCFF001TUG/@@download/ENCFF001TUG.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF002CGG bed narrowPeak optimal idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 182974 ENCODE Consortium Analysis Working Group 35e7864c26166b091a0d73cec1ae8595 https://www.encodeproject.org/files/ENCFF002CGG/@@download/ENCFF002CGG.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF129KBY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGG 552956 ENCODE Consortium ccdbe8c27553e4810b5f75a1f0c80c70 https://www.encodeproject.org/files/ENCFF129KBY/@@download/ENCFF129KBY.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF617FVJ bam unfiltered alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKG, ENCFF643CGH 1927060570 ENCODE Processing Pipeline cbebff040f2416ae275cce902ae4ebeb https://www.encodeproject.org/files/ENCFF617FVJ/@@download/ENCFF617FVJ.bam GRCh38 released low read length biological replicates with identical biosample ENCFF090UNH bam unfiltered alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKB, ENCFF643CGH 1879835959 ENCODE Processing Pipeline 2315494b0a9eaff2ae28b454aba7840d https://www.encodeproject.org/files/ENCFF090UNH/@@download/ENCFF090UNH.bam GRCh38 released low read length biological replicates with identical biosample ENCFF774ZQG bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKB, ENCFF643CGH 1095549613 ENCODE Processing Pipeline 86d2ca6a2a586ab99cb3726a9fcabfa7 https://www.encodeproject.org/files/ENCFF774ZQG/@@download/ENCFF774ZQG.bam GRCh38 released low read length biological replicates with identical biosample ENCFF637ZXE bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKG, ENCFF643CGH 1168817433 ENCODE Processing Pipeline 783d70c576a8f1e349abe69371f6c75b https://www.encodeproject.org/files/ENCFF637ZXE/@@download/ENCFF637ZXE.bam GRCh38 released low read length biological replicates with identical biosample ENCFF217FGA bam unfiltered alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKG, ENCFF807MUK 1917623254 ENCODE Processing Pipeline f5f202a249f9adc2a93147fa3fa150c5 https://www.encodeproject.org/files/ENCFF217FGA/@@download/ENCFF217FGA.bam hg19 released low read length biological replicates with identical biosample ENCFF226UHN bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKG, ENCFF807MUK 1169023823 ENCODE Processing Pipeline 75063bf2175de890b9953b28c408b2cb https://www.encodeproject.org/files/ENCFF226UHN/@@download/ENCFF226UHN.bam hg19 released low read length biological replicates with identical biosample ENCFF687PCL bam unfiltered alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKB, ENCFF807MUK 1872801904 ENCODE Processing Pipeline 71fcce0211d7fb67f4f4f786d1da589a https://www.encodeproject.org/files/ENCFF687PCL/@@download/ENCFF687PCL.bam hg19 released low read length biological replicates with identical biosample ENCFF613UOL bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKB, ENCFF807MUK 1095754081 ENCODE Processing Pipeline f4cc302dfb6a37af54800f984c6a83da https://www.encodeproject.org/files/ENCFF613UOL/@@download/ENCFF613UOL.bam hg19 released low read length biological replicates with identical biosample ENCFF688IJB bigWig signal p-value ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF637ZXE, ENCFF656HEF 700733540 ENCODE Processing Pipeline 3e9039b83739a20dad2ac6314b763671 https://www.encodeproject.org/files/ENCFF688IJB/@@download/ENCFF688IJB.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF468OYP bigWig signal p-value ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF774ZQG 619180823 ENCODE Processing Pipeline 83ef2213d23dd33c405c8040e4f11582 https://www.encodeproject.org/files/ENCFF468OYP/@@download/ENCFF468OYP.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF010LTG bigWig signal p-value ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF637ZXE, ENCFF656HEF, ENCFF774ZQG 824650295 ENCODE Processing Pipeline 2dcb525068d416603f40b9318bc755f2 https://www.encodeproject.org/files/ENCFF010LTG/@@download/ENCFF010LTG.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF372OSA bigWig fold change over control ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF637ZXE, ENCFF656HEF 557000296 ENCODE Processing Pipeline 6c1fbcd9a2a44fb4bc1d5d4a2d6a2d82 https://www.encodeproject.org/files/ENCFF372OSA/@@download/ENCFF372OSA.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF157GKA bigWig fold change over control ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF774ZQG 580449229 ENCODE Processing Pipeline c100ed82bb48fc70e3b2b607392f6d2f https://www.encodeproject.org/files/ENCFF157GKA/@@download/ENCFF157GKA.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF295LJY bigWig fold change over control ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF637ZXE, ENCFF656HEF, ENCFF774ZQG 919630515 ENCODE Processing Pipeline 27b0597dbfc8bb671920e969ca09f07b https://www.encodeproject.org/files/ENCFF295LJY/@@download/ENCFF295LJY.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF576OOX bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF637ZXE, ENCFF656HEF 5621393 ENCODE Processing Pipeline 2ced19f44576f730784669137afdc792 https://www.encodeproject.org/files/ENCFF576OOX/@@download/ENCFF576OOX.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF865UNN bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF637ZXE, ENCFF656HEF, ENCFF774ZQG 6793331 ENCODE Processing Pipeline b31e7139f1035e8b1d5493a0e501e267 https://www.encodeproject.org/files/ENCFF865UNN/@@download/ENCFF865UNN.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF117CBR bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF774ZQG 6184704 ENCODE Processing Pipeline 4f3232d0f8d93e2ec6de9e5e20c1a304 https://www.encodeproject.org/files/ENCFF117CBR/@@download/ENCFF117CBR.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF660DEL bigBed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF117CBR 13191553 ENCODE Processing Pipeline a0eb94239da48d4e44ef562ce090cb0d https://www.encodeproject.org/files/ENCFF660DEL/@@download/ENCFF660DEL.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF853OHB bigBed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF865UNN 13392783 ENCODE Processing Pipeline fe13a73074c8fd6b18ffbfec0cf61104 https://www.encodeproject.org/files/ENCFF853OHB/@@download/ENCFF853OHB.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF192LJQ bed narrowPeak conservative idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF117CBR, ENCFF419RSJ, ENCFF576OOX, ENCFF865UNN 170502 ENCODE Processing Pipeline 3beaeeba9aa397fb2e97e78d4186652b https://www.encodeproject.org/files/ENCFF192LJQ/@@download/ENCFF192LJQ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF809OVX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF593ZJA 475994 ENCODE Processing Pipeline d2b80b57ad20ea7b7d23ba1f27cc2167 https://www.encodeproject.org/files/ENCFF809OVX/@@download/ENCFF809OVX.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF559PPT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF192LJQ 417670 ENCODE Processing Pipeline 3615a8f4a64ade82664a291ac1bf6684 https://www.encodeproject.org/files/ENCFF559PPT/@@download/ENCFF559PPT.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF529IGW bigBed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF576OOX 13391267 ENCODE Processing Pipeline 9118bfd66009fa684a973ecb2233b6b1 https://www.encodeproject.org/files/ENCFF529IGW/@@download/ENCFF529IGW.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF593ZJA bed narrowPeak optimal idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF117CBR, ENCFF419RSJ, ENCFF576OOX, ENCFF865UNN 203825 ENCODE Processing Pipeline 10f21f77a3432a96779ca2f0bf1b4123 https://www.encodeproject.org/files/ENCFF593ZJA/@@download/ENCFF593ZJA.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF381MAK bigWig signal p-value ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF613UOL, ENCFF864UEQ 685417365 ENCODE Processing Pipeline 8f07f0aff6c5f572c27b03860d0ac767 https://www.encodeproject.org/files/ENCFF381MAK/@@download/ENCFF381MAK.bigWig hg19 released low read length biological replicates with identical biosample ENCFF720MMP bigWig signal p-value ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF226UHN, ENCFF864UEQ 636762898 ENCODE Processing Pipeline ccc753f61ad9e7f96bfa8cedd4b36a0d https://www.encodeproject.org/files/ENCFF720MMP/@@download/ENCFF720MMP.bigWig hg19 released low read length biological replicates with identical biosample ENCFF903RWE bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF226UHN, ENCFF613UOL, ENCFF864UEQ 6816179 ENCODE Processing Pipeline 701d2215d7f54f1137fc5892d96775e5 https://www.encodeproject.org/files/ENCFF903RWE/@@download/ENCFF903RWE.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF850PYM bigBed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF327NKC 13408290 ENCODE Processing Pipeline b938fd7030d2f74d78bf2a169225d6d4 https://www.encodeproject.org/files/ENCFF850PYM/@@download/ENCFF850PYM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF199ZVL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF503HUG 417910 ENCODE Processing Pipeline 02b46ddc7dd7cccfeb6c6426a77900e9 https://www.encodeproject.org/files/ENCFF199ZVL/@@download/ENCFF199ZVL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF002SHK bigBed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF903RWE 13386248 ENCODE Processing Pipeline 202a707c5226dd12b435b5577433a823 https://www.encodeproject.org/files/ENCFF002SHK/@@download/ENCFF002SHK.bigBed hg19 released low read length biological replicates with identical biosample ENCFF348LEI bigWig fold change over control ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF613UOL, ENCFF864UEQ 578873311 ENCODE Processing Pipeline 76697ecea0b7dd486c9f9f51e8de3b6a https://www.encodeproject.org/files/ENCFF348LEI/@@download/ENCFF348LEI.bigWig hg19 released low read length biological replicates with identical biosample ENCFF071BUW bigWig fold change over control ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF226UHN, ENCFF864UEQ 553581663 ENCODE Processing Pipeline f1d8ab12179e1363d0fd6b68afce522a https://www.encodeproject.org/files/ENCFF071BUW/@@download/ENCFF071BUW.bigWig hg19 released low read length biological replicates with identical biosample ENCFF787ODT bigWig signal p-value ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF226UHN, ENCFF613UOL, ENCFF864UEQ 824747738 ENCODE Processing Pipeline dd88be1a7c808913d75c9c6b5dea026b https://www.encodeproject.org/files/ENCFF787ODT/@@download/ENCFF787ODT.bigWig hg19 released low read length biological replicates with identical biosample ENCFF395PIB bigWig fold change over control ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF226UHN, ENCFF613UOL, ENCFF864UEQ 919015401 ENCODE Processing Pipeline 27007a87d81165dac4af8a196453e0cc https://www.encodeproject.org/files/ENCFF395PIB/@@download/ENCFF395PIB.bigWig hg19 released low read length biological replicates with identical biosample ENCFF388SYQ bigBed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF213KTM 13181586 ENCODE Processing Pipeline c2a18e0549a7b6f86c658dfbf8291d1d https://www.encodeproject.org/files/ENCFF388SYQ/@@download/ENCFF388SYQ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF337THP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF639NGJ 470835 ENCODE Processing Pipeline 3b339cbd839c7a82c34b8a3f39172dcb https://www.encodeproject.org/files/ENCFF337THP/@@download/ENCFF337THP.bigBed hg19 released low read length biological replicates with identical biosample ENCFF327NKC bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF226UHN, ENCFF864UEQ 5712784 ENCODE Processing Pipeline 891baaf476e37bdbaa60e7d39af1a6f4 https://www.encodeproject.org/files/ENCFF327NKC/@@download/ENCFF327NKC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF213KTM bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF613UOL, ENCFF864UEQ 6181362 ENCODE Processing Pipeline 4e38e53568c072d11b308794448f527e https://www.encodeproject.org/files/ENCFF213KTM/@@download/ENCFF213KTM.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF503HUG bed narrowPeak conservative idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF213KTM, ENCFF327NKC, ENCFF903RWE 170891 ENCODE Processing Pipeline d9e80f2a97ec3f880fce033d69130d05 https://www.encodeproject.org/files/ENCFF503HUG/@@download/ENCFF503HUG.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF639NGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF213KTM, ENCFF327NKC, ENCFF903RWE 201332 ENCODE Processing Pipeline fa24c935ecf2f82e6f2a303a812a5730 https://www.encodeproject.org/files/ENCFF639NGJ/@@download/ENCFF639NGJ.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF001HRN bigBed broadPeak hotspots ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XSF 3776286 John Stamatoyannopoulos, UW aaf80c22b9a30e57d68e6d76755b88aa https://www.encodeproject.org/files/ENCFF001HRN/@@download/ENCFF001HRN.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRO bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HSF 1076766482 John Stamatoyannopoulos, UW 554ef0e8731de7d0f0504f827cd68c48 https://www.encodeproject.org/files/ENCFF001HRO/@@download/ENCFF001HRO.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRP bigBed broadPeak hotspots ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSG 3158390 John Stamatoyannopoulos, UW af2e9596320171a648e5d7c44954c0bb https://www.encodeproject.org/files/ENCFF001HRP/@@download/ENCFF001HRP.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRQ bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XSH 1220244 John Stamatoyannopoulos, UW 079cf6c1791eff3489ff8ebef3313350 https://www.encodeproject.org/files/ENCFF001HRQ/@@download/ENCFF001HRQ.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRR bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSI 1061861 John Stamatoyannopoulos, UW 98575cb7b16d9ce94496d15349b35c80 https://www.encodeproject.org/files/ENCFF001HRR/@@download/ENCFF001HRR.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRS bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRY 620970420 John Stamatoyannopoulos, UW f4ba1113407d6ecc2a9743fa315633c9 https://www.encodeproject.org/files/ENCFF001HRS/@@download/ENCFF001HRS.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRT bigWig raw signal ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRO 192654505 John Stamatoyannopoulos, UW 9ceb0ee7e7eb012493a3754e7799a9f3 https://www.encodeproject.org/files/ENCFF001HRT/@@download/ENCFF001HRT.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRV bigWig raw signal ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRS 123874664 John Stamatoyannopoulos, UW 76187365d2ee4b57b9bc3a053b86acbe https://www.encodeproject.org/files/ENCFF001HRV/@@download/ENCFF001HRV.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRY fastq reads ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 718498902 John Stamatoyannopoulos, UW 33d4e12b59ed4a6b461a9f82cc9bd398 https://www.encodeproject.org/files/ENCFF001HRY/@@download/ENCFF001HRY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HSI/ released control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HSF fastq reads ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1182075590 John Stamatoyannopoulos, UW 40bf9165a5cd8bd506f0ffbe4186df1f https://www.encodeproject.org/files/ENCFF001HSF/@@download/ENCFF001HSF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HSI/ released control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XSF bed broadPeak hotspots ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRO 2665700 John Stamatoyannopoulos, UW 78ddfbc44a210b4744cab973e601a917 https://www.encodeproject.org/files/ENCFF001XSF/@@download/ENCFF001XSF.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XSG bed broadPeak hotspots ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRS 2168712 John Stamatoyannopoulos, UW e444730384fdf6793b338c85d61ddd56 https://www.encodeproject.org/files/ENCFF001XSG/@@download/ENCFF001XSG.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XSH bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRO 880093 John Stamatoyannopoulos, UW 93514248ac0350e0a0c0d14b2c3bad78 https://www.encodeproject.org/files/ENCFF001XSH/@@download/ENCFF001XSH.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XSI bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRS 739159 John Stamatoyannopoulos, UW 8e787dcbcdc51b6995672783275ae189 https://www.encodeproject.org/files/ENCFF001XSI/@@download/ENCFF001XSI.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF002DDG bed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HRO, ENCFF001HRS 1184350 ENCODE Consortium Analysis Working Group 129a0f5bb7fcab4c455672663f493192 https://www.encodeproject.org/files/ENCFF002DDG/@@download/ENCFF002DDG.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF873DFA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDG 2403887 ENCODE Consortium 8a5c06153fc8d889c3ba842744d6133b https://www.encodeproject.org/files/ENCFF873DFA/@@download/ENCFF873DFA.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF653TBS bam unfiltered alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRY, ENCFF643CGH 817203798 ENCODE Processing Pipeline 39c983458c0b4129e6a88d6e5d553639 https://www.encodeproject.org/files/ENCFF653TBS/@@download/ENCFF653TBS.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF720GUI bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRY, ENCFF643CGH 542036942 ENCODE Processing Pipeline f599df455cbaac28ee866ec76efcc91c https://www.encodeproject.org/files/ENCFF720GUI/@@download/ENCFF720GUI.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF985XLO bam unfiltered alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HSF, ENCFF643CGH 1348136427 ENCODE Processing Pipeline d47146afb938ca9683b597ff7a05fb7e https://www.encodeproject.org/files/ENCFF985XLO/@@download/ENCFF985XLO.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF477ASU bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HSF, ENCFF643CGH 915799145 ENCODE Processing Pipeline b29ba958dd09e74c20c8fc8e665cdc46 https://www.encodeproject.org/files/ENCFF477ASU/@@download/ENCFF477ASU.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF919KWN bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRY, ENCFF807MUK 542363441 ENCODE Processing Pipeline fbb3761397410432c37312f01bf44e47 https://www.encodeproject.org/files/ENCFF919KWN/@@download/ENCFF919KWN.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF764BPB bam unfiltered alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRY, ENCFF807MUK 814709252 ENCODE Processing Pipeline 76b203658e519854d4e6c3f763ccc04a https://www.encodeproject.org/files/ENCFF764BPB/@@download/ENCFF764BPB.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF178SLS bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HSF, ENCFF807MUK 916128146 ENCODE Processing Pipeline 2d148ddd7b95e2e81c987a02ca5ab640 https://www.encodeproject.org/files/ENCFF178SLS/@@download/ENCFF178SLS.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF026ICL bam unfiltered alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HSF, ENCFF807MUK 1342410780 ENCODE Processing Pipeline 82233eb5031d5f67fd241a15f9519405 https://www.encodeproject.org/files/ENCFF026ICL/@@download/ENCFF026ICL.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF500FOV bigWig signal p-value ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF419THA, ENCFF720GUI 323747994 ENCODE Processing Pipeline b08a497dfb57a9634193899229224178 https://www.encodeproject.org/files/ENCFF500FOV/@@download/ENCFF500FOV.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF252HOJ bigWig signal p-value ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419THA, ENCFF477ASU, ENCFF720GUI 373292028 ENCODE Processing Pipeline 628052122294b926335d151c0e0bd36f https://www.encodeproject.org/files/ENCFF252HOJ/@@download/ENCFF252HOJ.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF455WAF bigWig fold change over control ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419THA, ENCFF477ASU 358363355 ENCODE Processing Pipeline 6ae781d4742a52e3cb00d75a38f57fd2 https://www.encodeproject.org/files/ENCFF455WAF/@@download/ENCFF455WAF.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF184NDC bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419THA, ENCFF477ASU 4383617 ENCODE Processing Pipeline 147fc6f3724af90fb223bff53f3a74f2 https://www.encodeproject.org/files/ENCFF184NDC/@@download/ENCFF184NDC.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF522RRZ bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF184NDC 11000468 ENCODE Processing Pipeline dc87f5e12a80068be53c6a80b1509f92 https://www.encodeproject.org/files/ENCFF522RRZ/@@download/ENCFF522RRZ.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF975BQZ bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF419THA, ENCFF720GUI 4058391 ENCODE Processing Pipeline c005efe980283111585915634e334c40 https://www.encodeproject.org/files/ENCFF975BQZ/@@download/ENCFF975BQZ.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF409DTL bed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF184NDC, ENCFF237DEX, ENCFF419RSJ, ENCFF975BQZ 913924 ENCODE Processing Pipeline b7329f28a94df4a1a583033b8acde743 https://www.encodeproject.org/files/ENCFF409DTL/@@download/ENCFF409DTL.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF803ZXO bigWig signal p-value ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419THA, ENCFF477ASU 397901950 ENCODE Processing Pipeline c6604c6d1ecf58b2173ff8c81ea4051b https://www.encodeproject.org/files/ENCFF803ZXO/@@download/ENCFF803ZXO.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF479ZNF bigWig fold change over control ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF419THA, ENCFF720GUI 235794855 ENCODE Processing Pipeline 388426e6e37126e744b91b8029d9be00 https://www.encodeproject.org/files/ENCFF479ZNF/@@download/ENCFF479ZNF.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF732MRP bigWig fold change over control ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419THA, ENCFF477ASU, ENCFF720GUI 526264942 ENCODE Processing Pipeline bafb148b24a0d2e6d98c3ae082fd19a1 https://www.encodeproject.org/files/ENCFF732MRP/@@download/ENCFF732MRP.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF237DEX bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419THA, ENCFF477ASU, ENCFF720GUI 4675023 ENCODE Processing Pipeline 27290c38f226f65fe136e2f1078234e2 https://www.encodeproject.org/files/ENCFF237DEX/@@download/ENCFF237DEX.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF200QPU bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF975BQZ 8307844 ENCODE Processing Pipeline 41dabc77e69054f5759f51bb34dc8837 https://www.encodeproject.org/files/ENCFF200QPU/@@download/ENCFF200QPU.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF061CEV bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF237DEX 11355015 ENCODE Processing Pipeline 664a93928f045c3c6f539a702b373a21 https://www.encodeproject.org/files/ENCFF061CEV/@@download/ENCFF061CEV.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF715WYH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF409DTL 1607156 ENCODE Processing Pipeline 6cfcb2c597dfc18fb97c03216b05f1ef https://www.encodeproject.org/files/ENCFF715WYH/@@download/ENCFF715WYH.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF314PAJ bigWig signal p-value ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF831AXW, ENCFF919KWN 349519767 ENCODE Processing Pipeline eb8a96bff9fbde90a8e5dc7038886514 https://www.encodeproject.org/files/ENCFF314PAJ/@@download/ENCFF314PAJ.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF946WNT bigWig signal p-value ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF178SLS, ENCFF831AXW, ENCFF919KWN 373536523 ENCODE Processing Pipeline 7a77f9d7498f96cd7a0ea44b9e4fb128 https://www.encodeproject.org/files/ENCFF946WNT/@@download/ENCFF946WNT.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF378WYL bigWig fold change over control ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF178SLS, ENCFF831AXW, ENCFF919KWN 522179282 ENCODE Processing Pipeline 55b30a88a52f55e66e61e3eb66934f10 https://www.encodeproject.org/files/ENCFF378WYL/@@download/ENCFF378WYL.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF647XYZ bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF178SLS, ENCFF831AXW, ENCFF919KWN 4668579 ENCODE Processing Pipeline af8aa51de44a60e2a7f1c29720a9219f https://www.encodeproject.org/files/ENCFF647XYZ/@@download/ENCFF647XYZ.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF188IMN bigWig fold change over control ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF178SLS, ENCFF831AXW 359257171 ENCODE Processing Pipeline e70a37ef8ec6b4b1c41886e6890b31a3 https://www.encodeproject.org/files/ENCFF188IMN/@@download/ENCFF188IMN.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF578WZB bigWig fold change over control ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF831AXW, ENCFF919KWN 235940657 ENCODE Processing Pipeline e9262e6e9270acd2b2a25758f1f7a6ae https://www.encodeproject.org/files/ENCFF578WZB/@@download/ENCFF578WZB.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF181EKB bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412BGE 10993876 ENCODE Processing Pipeline 4f522950dba1089c37824f6847bd8a21 https://www.encodeproject.org/files/ENCFF181EKB/@@download/ENCFF181EKB.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF197JEB bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF695UND 8311286 ENCODE Processing Pipeline 0b690d58a2c5eecdf1e3325515556d2b https://www.encodeproject.org/files/ENCFF197JEB/@@download/ENCFF197JEB.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF402LFQ bigBed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF647XYZ 11342467 ENCODE Processing Pipeline ced1c15ae299212109fdefa9afc35afc https://www.encodeproject.org/files/ENCFF402LFQ/@@download/ENCFF402LFQ.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF139DOR bed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF412BGE, ENCFF647XYZ, ENCFF695UND 908206 ENCODE Processing Pipeline 0a252ead988d04608f92e283a28c1b6c https://www.encodeproject.org/files/ENCFF139DOR/@@download/ENCFF139DOR.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF373ZYM bigWig signal p-value ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF178SLS, ENCFF831AXW 397990029 ENCODE Processing Pipeline 7431ca6a86807c2aa9f9b3944020e39c https://www.encodeproject.org/files/ENCFF373ZYM/@@download/ENCFF373ZYM.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF412BGE bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF178SLS, ENCFF831AXW 4375823 ENCODE Processing Pipeline 6757cdb64666a5a94b6ff783a457ba11 https://www.encodeproject.org/files/ENCFF412BGE/@@download/ENCFF412BGE.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF695UND bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF831AXW, ENCFF919KWN 4061971 ENCODE Processing Pipeline ffd4adf0bdeb412ece0eb94210206d9e https://www.encodeproject.org/files/ENCFF695UND/@@download/ENCFF695UND.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF255WCC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF139DOR 1597453 ENCODE Processing Pipeline e6c66683ba1f89b3fd829dd8f827ffef https://www.encodeproject.org/files/ENCFF255WCC/@@download/ENCFF255WCC.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF000NNJ bam alignments ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NNX 1789773248 Richard Myers, HAIB 1b5d6655fe108eee61ba5aebe6d3a0e3 https://www.encodeproject.org/files/ENCFF000NNJ/@@download/ENCFF000NNJ.bam hg19 released biological replicates with identical biosample ENCFF000NNK bigBed broadPeak peaks ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVB 765845 Richard Myers, HAIB 9497fa45314fc4a2efdc530681676a4d https://www.encodeproject.org/files/ENCFF000NNK/@@download/ENCFF000NNK.bigBed hg19 released biological replicates with identical biosample ENCFF000NNL bigBed broadPeak peaks ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVC 901934 Richard Myers, HAIB 5edfa7f3dcf040cf417f325ad89c4426 https://www.encodeproject.org/files/ENCFF000NNL/@@download/ENCFF000NNL.bigBed hg19 released biological replicates with identical biosample ENCFF000NNO bigWig raw signal ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 228411608 Richard Myers, HAIB 1b3ca21e984cbb65860d63aabfa89e26 https://www.encodeproject.org/files/ENCFF000NNO/@@download/ENCFF000NNO.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NNP bigWig raw signal ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 240240339 Richard Myers, HAIB d76764b752aa788f31a0bfdc56f4a9cc https://www.encodeproject.org/files/ENCFF000NNP/@@download/ENCFF000NNP.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NNQ bam alignments ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NNZ 1913031341 Richard Myers, HAIB 9cf7ae05d7e932b8f76847445455a6d2 https://www.encodeproject.org/files/ENCFF000NNQ/@@download/ENCFF000NNQ.bam hg19 released biological replicates with identical biosample ENCFF000NNX fastq reads ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1794713896 Richard Myers, HAIB b84bf406f030e3ff67571f71a609596a https://www.encodeproject.org/files/ENCFF000NNX/@@download/ENCFF000NNX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NNZ fastq reads ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1972137460 Richard Myers, HAIB d2439ff07380c26c0bbacccba630a743 https://www.encodeproject.org/files/ENCFF000NNZ/@@download/ENCFF000NNZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TVB bed broadPeak peaks ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 388668 Richard Myers, HAIB c905116c6b540f2400fa2a8e7b024103 https://www.encodeproject.org/files/ENCFF001TVB/@@download/ENCFF001TVB.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVC bed broadPeak peaks ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 486079 Richard Myers, HAIB 4a0bbb1e6bc5b3a16bce2f811211e9ad https://www.encodeproject.org/files/ENCFF001TVC/@@download/ENCFF001TVC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000YFB bigBed narrowPeak peaks ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VLX 1861649 Kevin Struhl, HMS d479013c183624d8964988df2f244926 https://www.encodeproject.org/files/ENCFF000YFB/@@download/ENCFF000YFB.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000YFC fastq reads ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1197728872 Kevin Struhl, HMS 951a4ba4b33763070cc8d227292b5900 https://www.encodeproject.org/files/ENCFF000YFC/@@download/ENCFF000YFC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000YFE fastq reads ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1417838165 Kevin Struhl, HMS fff138976284100ca6c0d7460005adfc https://www.encodeproject.org/files/ENCFF000YFE/@@download/ENCFF000YFE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000YFF bam alignments ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000YFC 620600383 Kevin Struhl, HMS 39b0e9a06a04b0271929092b25490f4c https://www.encodeproject.org/files/ENCFF000YFF/@@download/ENCFF000YFF.bam hg19 released low read length biological replicates with identical biosample ENCFF000YFH bigWig signal ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 430421426 Kevin Struhl, HMS 29cfd49de2206195dc3c4410ed1f7ab8 https://www.encodeproject.org/files/ENCFF000YFH/@@download/ENCFF000YFH.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000YFI bam alignments ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000YFE 687640730 Kevin Struhl, HMS 9e5ea5e2246e678839920cb827ae472e https://www.encodeproject.org/files/ENCFF000YFI/@@download/ENCFF000YFI.bam hg19 released low read length biological replicates with identical biosample ENCFF001VLX bed narrowPeak peaks ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 834029 Kevin Struhl, HMS 95c2925ddbe06732dab3375c07d57fd0 https://www.encodeproject.org/files/ENCFF001VLX/@@download/ENCFF001VLX.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CVM bed narrowPeak optimal idr thresholded peaks ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 373491 ENCODE Consortium Analysis Working Group 225df5bb216e466ac39f799e1eaa6e61 https://www.encodeproject.org/files/ENCFF002CVM/@@download/ENCFF002CVM.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF254UOG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVM 890164 ENCODE Consortium 6c8f32b74d0dcb6cdca50b5174beaa37 https://www.encodeproject.org/files/ENCFF254UOG/@@download/ENCFF254UOG.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000WSB bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 1 475727228 Michael Snyder, Stanford 1f749c207bf712769f793124a7be5b19 https://www.encodeproject.org/files/ENCFF000WSB/@@download/ENCFF000WSB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WSC bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VGT 1255479 Michael Snyder, Stanford e16b69d4819f253c772523d4816d477d https://www.encodeproject.org/files/ENCFF000WSC/@@download/ENCFF000WSC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSD fastq reads ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1075026514 Michael Snyder, Stanford 494349c6036612a32836f5f2908b949c https://www.encodeproject.org/files/ENCFF000WSD/@@download/ENCFF000WSD.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSF fastq reads ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1201013975 Michael Snyder, Stanford 2d805d542b5c855456f8cfe9753f4c70 https://www.encodeproject.org/files/ENCFF000WSF/@@download/ENCFF000WSF.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSH bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 1 640639596 Michael Snyder, Stanford 63601d01d8436baef183e628dbeef701 https://www.encodeproject.org/files/ENCFF000WSH/@@download/ENCFF000WSH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WSI bigWig signal ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 400643372 Michael Snyder, Stanford cf51b7ed44e4d39aefade4c0ad5f0869 https://www.encodeproject.org/files/ENCFF000WSI/@@download/ENCFF000WSI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VGT bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 646007 Michael Snyder, Stanford 0edf98fcc1d7f037824293a197b64edf https://www.encodeproject.org/files/ENCFF001VGT/@@download/ENCFF001VGT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CQV bed narrowPeak optimal idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 119712 ENCODE Consortium Analysis Working Group 6571f69723eb01caa7da53909fe4b27b https://www.encodeproject.org/files/ENCFF002CQV/@@download/ENCFF002CQV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF107HDG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CQV 350310 ENCODE Consortium 68c5205b2583ee9b201dc19b7884bc16 https://www.encodeproject.org/files/ENCFF107HDG/@@download/ENCFF107HDG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF704ENS bam unfiltered alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSD, ENCFF643CGH 1195331084 ENCODE Processing Pipeline 0d3cacdfd7eacad2c0f9f371f39ba375 https://www.encodeproject.org/files/ENCFF704ENS/@@download/ENCFF704ENS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF503VEU bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSD, ENCFF643CGH 703537687 ENCODE Processing Pipeline 2cd71a51dd65dda1975ea442f9677ccc https://www.encodeproject.org/files/ENCFF503VEU/@@download/ENCFF503VEU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF522IHE bam unfiltered alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSF, ENCFF643CGH 1344370691 ENCODE Processing Pipeline 15feeb689e557df0417c3cf390cb8ac1 https://www.encodeproject.org/files/ENCFF522IHE/@@download/ENCFF522IHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF705LAV bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSF, ENCFF643CGH 874003462 ENCODE Processing Pipeline 25b69ee762216788c6f726ab9d6a86e7 https://www.encodeproject.org/files/ENCFF705LAV/@@download/ENCFF705LAV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF275SJP bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSD, ENCFF807MUK 703903213 ENCODE Processing Pipeline fe36f6f3e9b60c683a39f2685d62c3b7 https://www.encodeproject.org/files/ENCFF275SJP/@@download/ENCFF275SJP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF934ZAX bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSF, ENCFF807MUK 874471660 ENCODE Processing Pipeline c271e39f80602e4f7aa3584441dda643 https://www.encodeproject.org/files/ENCFF934ZAX/@@download/ENCFF934ZAX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF886XFA bam unfiltered alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSF, ENCFF807MUK 1338953442 ENCODE Processing Pipeline dc157b574a2ff48a1e5fb37bfc775bb4 https://www.encodeproject.org/files/ENCFF886XFA/@@download/ENCFF886XFA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF889SXI bam unfiltered alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSD, ENCFF807MUK 1189777194 ENCODE Processing Pipeline 13681609c530c7578043e9515f96806e https://www.encodeproject.org/files/ENCFF889SXI/@@download/ENCFF889SXI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF462NJD bigWig signal p-value ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF503VEU, ENCFF513EWK, ENCFF705LAV 771429653 ENCODE Processing Pipeline 7f73aac54918befa065ce62f9ee3f1f6 https://www.encodeproject.org/files/ENCFF462NJD/@@download/ENCFF462NJD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF907NVJ bigWig signal p-value ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF503VEU, ENCFF513EWK 528846178 ENCODE Processing Pipeline 83f7486932718eb85b0a1d911066da19 https://www.encodeproject.org/files/ENCFF907NVJ/@@download/ENCFF907NVJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780QUH bigWig signal p-value ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF705LAV 572542522 ENCODE Processing Pipeline c73beeb95327cfb13423574537c38573 https://www.encodeproject.org/files/ENCFF780QUH/@@download/ENCFF780QUH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF865USR bigWig fold change over control ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF705LAV 496287751 ENCODE Processing Pipeline 76905205ac35b96c832fe75054dce63b https://www.encodeproject.org/files/ENCFF865USR/@@download/ENCFF865USR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF491NAO bigWig fold change over control ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF503VEU, ENCFF513EWK 409089853 ENCODE Processing Pipeline 6f3cf3392327f3bbe3f1c00ebd9a5e3f https://www.encodeproject.org/files/ENCFF491NAO/@@download/ENCFF491NAO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF117YTK bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF705LAV 4495599 ENCODE Processing Pipeline 88690f268a4dcdf8f31d8c8b1298470c https://www.encodeproject.org/files/ENCFF117YTK/@@download/ENCFF117YTK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF878ZLF bigWig fold change over control ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF503VEU, ENCFF513EWK, ENCFF705LAV 772223785 ENCODE Processing Pipeline 3398a40d8e9bc3ae8285d668cf9a6744 https://www.encodeproject.org/files/ENCFF878ZLF/@@download/ENCFF878ZLF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952TOD bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF946SZM 10721830 ENCODE Processing Pipeline 6239ef5eac784752e1025c47701c9ac3 https://www.encodeproject.org/files/ENCFF952TOD/@@download/ENCFF952TOD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946SZM bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF503VEU, ENCFF513EWK 4071201 ENCODE Processing Pipeline e3550da571f1a8a2af306a8db597d2cb https://www.encodeproject.org/files/ENCFF946SZM/@@download/ENCFF946SZM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF705AMR bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF503VEU, ENCFF513EWK, ENCFF705LAV 5097095 ENCODE Processing Pipeline d98414d055f4e33df7f686ffa75e193f https://www.encodeproject.org/files/ENCFF705AMR/@@download/ENCFF705AMR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF372RQZ bed narrowPeak conservative idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF117YTK, ENCFF419RSJ, ENCFF705AMR, ENCFF946SZM 99547 ENCODE Processing Pipeline e536d8556bccd9fa1ae89cb422c96417 https://www.encodeproject.org/files/ENCFF372RQZ/@@download/ENCFF372RQZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF861KIX bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF705AMR 11588351 ENCODE Processing Pipeline 4506bf16ac7d6668c6581e289864e902 https://www.encodeproject.org/files/ENCFF861KIX/@@download/ENCFF861KIX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182LIP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF392JJN 237559 ENCODE Processing Pipeline bcbaac01b2bda48e117ff6d082bbc18e https://www.encodeproject.org/files/ENCFF182LIP/@@download/ENCFF182LIP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF092TWZ bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF117YTK 11153982 ENCODE Processing Pipeline 13bff18461c06e77b71ad24e3292abc4 https://www.encodeproject.org/files/ENCFF092TWZ/@@download/ENCFF092TWZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392JJN bed narrowPeak optimal idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF117YTK, ENCFF419RSJ, ENCFF705AMR, ENCFF946SZM 121090 ENCODE Processing Pipeline 2eb2174f94c3d036591290de643646ff https://www.encodeproject.org/files/ENCFF392JJN/@@download/ENCFF392JJN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF961BCQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF372RQZ 207401 ENCODE Processing Pipeline 01ef2ff6b934c7451482b13823d4bb5b https://www.encodeproject.org/files/ENCFF961BCQ/@@download/ENCFF961BCQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF382BNY bigWig signal p-value ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF275SJP, ENCFF599MVB, ENCFF934ZAX 771955897 ENCODE Processing Pipeline 74edefeae959eb4e74a674725ca8865c https://www.encodeproject.org/files/ENCFF382BNY/@@download/ENCFF382BNY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF136KED bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF164IAN 10725364 ENCODE Processing Pipeline 7cd4d75a42e6a61735dacb127bd22cc9 https://www.encodeproject.org/files/ENCFF136KED/@@download/ENCFF136KED.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF283NTA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF505GDH 205730 ENCODE Processing Pipeline d733b10a99cd748db5a9b3efa7a416bc https://www.encodeproject.org/files/ENCFF283NTA/@@download/ENCFF283NTA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732MAH bigWig signal p-value ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF599MVB, ENCFF934ZAX 632964271 ENCODE Processing Pipeline d49fcfee2d9886c9d2852b958edad13e https://www.encodeproject.org/files/ENCFF732MAH/@@download/ENCFF732MAH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF648ATO bigWig fold change over control ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF599MVB, ENCFF934ZAX 496382771 ENCODE Processing Pipeline 4abf0715ecdfb89f9f3b2a754a47621b https://www.encodeproject.org/files/ENCFF648ATO/@@download/ENCFF648ATO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF164IAN bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF275SJP, ENCFF599MVB 4078586 ENCODE Processing Pipeline 5bef68690b866c5d75668ac8ea9c4461 https://www.encodeproject.org/files/ENCFF164IAN/@@download/ENCFF164IAN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF453CKK bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF241JSX 11079764 ENCODE Processing Pipeline 7b39869798a358af06f15ee6adec389c https://www.encodeproject.org/files/ENCFF453CKK/@@download/ENCFF453CKK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF314FKT bigWig signal p-value ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF275SJP, ENCFF599MVB 601801491 ENCODE Processing Pipeline 082101fcb4a809b3f7099949b41b846a https://www.encodeproject.org/files/ENCFF314FKT/@@download/ENCFF314FKT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF229ORX bigWig fold change over control ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF275SJP, ENCFF599MVB 412300124 ENCODE Processing Pipeline c9fc3102f6723cd013d123b64ded2a70 https://www.encodeproject.org/files/ENCFF229ORX/@@download/ENCFF229ORX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF505GDH bed narrowPeak conservative idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF164IAN, ENCFF241JSX, ENCFF808TOG 99003 ENCODE Processing Pipeline 0d4b2d8146fecb38fa79022bc36e7ba8 https://www.encodeproject.org/files/ENCFF505GDH/@@download/ENCFF505GDH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF399YFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF569IGP 233595 ENCODE Processing Pipeline 8cd159427f8e049e22aa5fe466e55e19 https://www.encodeproject.org/files/ENCFF399YFC/@@download/ENCFF399YFC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF808TOG bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF275SJP, ENCFF599MVB, ENCFF934ZAX 5145135 ENCODE Processing Pipeline 0861f1624f3c5472293da2940e0fc8c4 https://www.encodeproject.org/files/ENCFF808TOG/@@download/ENCFF808TOG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF569IGP bed narrowPeak optimal idr thresholded peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF164IAN, ENCFF241JSX, ENCFF808TOG 118663 ENCODE Processing Pipeline c21c11458242075faf796af2b64d9804 https://www.encodeproject.org/files/ENCFF569IGP/@@download/ENCFF569IGP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384KEP bigWig fold change over control ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF275SJP, ENCFF599MVB, ENCFF934ZAX 772624835 ENCODE Processing Pipeline 19d0d260ce43fe400ce68587369b070b https://www.encodeproject.org/files/ENCFF384KEP/@@download/ENCFF384KEP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF241JSX bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF599MVB, ENCFF934ZAX 4457180 ENCODE Processing Pipeline 30394c45d8ebe0da11c915fa8516c3cd https://www.encodeproject.org/files/ENCFF241JSX/@@download/ENCFF241JSX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF729LOM bigBed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF808TOG 11588674 ENCODE Processing Pipeline 1acde1103103879631a06413993840d7 https://www.encodeproject.org/files/ENCFF729LOM/@@download/ENCFF729LOM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HOF bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOQ 632776321 John Stamatoyannopoulos, UW 5ab34c980265016640459770a70e2252 https://www.encodeproject.org/files/ENCFF001HOF/@@download/ENCFF001HOF.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOG bigBed broadPeak hotspots ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XRF 5165376 John Stamatoyannopoulos, UW d390f52eacbda525c060bc7dcc6a33b8 https://www.encodeproject.org/files/ENCFF001HOG/@@download/ENCFF001HOG.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOH bigBed broadPeak hotspots ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XRG 3427319 John Stamatoyannopoulos, UW 40900845d78c083deceb9b63d284ef51 https://www.encodeproject.org/files/ENCFF001HOH/@@download/ENCFF001HOH.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOI bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XRH 981290 John Stamatoyannopoulos, UW ceb19fad7c91351c515a32326f2f6b2e https://www.encodeproject.org/files/ENCFF001HOI/@@download/ENCFF001HOI.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOJ bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XRI 925157 John Stamatoyannopoulos, UW 937adf2cacf6c29ba1ec12ff53899ec7 https://www.encodeproject.org/files/ENCFF001HOJ/@@download/ENCFF001HOJ.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOK bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HOR 840808135 John Stamatoyannopoulos, UW 4f3310a68f7b1a67c7917b70b2d67a05 https://www.encodeproject.org/files/ENCFF001HOK/@@download/ENCFF001HOK.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOL bigWig raw signal ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOF 123829597 John Stamatoyannopoulos, UW a6a8fca9fe6b22ce90581fc053e065a5 https://www.encodeproject.org/files/ENCFF001HOL/@@download/ENCFF001HOL.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOM bigWig raw signal ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HOK 160664121 John Stamatoyannopoulos, UW 4e3713e91c302a962262fa734c87671a https://www.encodeproject.org/files/ENCFF001HOM/@@download/ENCFF001HOM.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOQ fastq reads ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 762928562 John Stamatoyannopoulos, UW 33d2dc0c89ae3d6831886d4a3c3c29d9 https://www.encodeproject.org/files/ENCFF001HOQ/@@download/ENCFF001HOQ.fastq.gz Illumina Genome Analyzer /files/ENCFF001HOY/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001HOR fastq reads ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 957898997 John Stamatoyannopoulos, UW 1a4635253b7455b136e99a57819fbf3f https://www.encodeproject.org/files/ENCFF001HOR/@@download/ENCFF001HOR.fastq.gz Illumina Genome Analyzer /files/ENCFF001HOY/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001XRF bed broadPeak hotspots ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOF 2821257 John Stamatoyannopoulos, UW c64d998c81e4214565d0d87c8f4df8cc https://www.encodeproject.org/files/ENCFF001XRF/@@download/ENCFF001XRF.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001XRG bed broadPeak hotspots ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HOK 2333386 John Stamatoyannopoulos, UW bd7c22507275d1cf585b6aef97693db6 https://www.encodeproject.org/files/ENCFF001XRG/@@download/ENCFF001XRG.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001XRH bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOF 680973 John Stamatoyannopoulos, UW a385ae340290877f3ab426ab963fb6b5 https://www.encodeproject.org/files/ENCFF001XRH/@@download/ENCFF001XRH.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF001XRI bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HOK 628952 John Stamatoyannopoulos, UW fc8449d17a3d6ee29ddeae78fd707736 https://www.encodeproject.org/files/ENCFF001XRI/@@download/ENCFF001XRI.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF002DCZ bed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HOF, ENCFF001HOK 907794 ENCODE Consortium Analysis Working Group b733a057cca5f0d58d39b49e4d4999ef https://www.encodeproject.org/files/ENCFF002DCZ/@@download/ENCFF002DCZ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF985SAE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DCZ 1833049 ENCODE Consortium b361c12a1efa90d0e7cab2166bbac156 https://www.encodeproject.org/files/ENCFF985SAE/@@download/ENCFF985SAE.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF093NDW bam unfiltered alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOQ, ENCFF643CGH 866883982 ENCODE Processing Pipeline ea046fd95148d504c0d903a834dc09f0 https://www.encodeproject.org/files/ENCFF093NDW/@@download/ENCFF093NDW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF115QJZ bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOQ, ENCFF643CGH 537599378 ENCODE Processing Pipeline c04fe97b252da2db51b6c088ed56a343 https://www.encodeproject.org/files/ENCFF115QJZ/@@download/ENCFF115QJZ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF988PPV bam unfiltered alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOR, ENCFF643CGH 1103876711 ENCODE Processing Pipeline abf6a0234615d936c2f3bbdb5b0a7916 https://www.encodeproject.org/files/ENCFF988PPV/@@download/ENCFF988PPV.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF208QQC bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOR, ENCFF643CGH 715525529 ENCODE Processing Pipeline aafc554388b6c01715591fdcc650249e https://www.encodeproject.org/files/ENCFF208QQC/@@download/ENCFF208QQC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF638AUK bam unfiltered alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOQ, ENCFF807MUK 864133261 ENCODE Processing Pipeline 7cfb3cfc131ac34989ee13676e54db9c https://www.encodeproject.org/files/ENCFF638AUK/@@download/ENCFF638AUK.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF060JAA bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOQ, ENCFF807MUK 537836576 ENCODE Processing Pipeline 74847caac8fc3fbbda202b9396071e2b https://www.encodeproject.org/files/ENCFF060JAA/@@download/ENCFF060JAA.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF580BHF bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOR, ENCFF807MUK 715748358 ENCODE Processing Pipeline afa0f0627846cef3df5427b93d0b1dff https://www.encodeproject.org/files/ENCFF580BHF/@@download/ENCFF580BHF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF168MOC bam unfiltered alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOR, ENCFF807MUK 1099162947 ENCODE Processing Pipeline cb4a26cf5f42af0967dcc0935e86ba60 https://www.encodeproject.org/files/ENCFF168MOC/@@download/ENCFF168MOC.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF832MTR bigWig signal p-value ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF060JAA, ENCFF198DHL, ENCFF580BHF 438132441 ENCODE Processing Pipeline ffbfe1b08d209f96440cd2dbde285759 https://www.encodeproject.org/files/ENCFF832MTR/@@download/ENCFF832MTR.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF138WXR bigWig signal p-value ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF208QQC 370662069 ENCODE Processing Pipeline 734ecd878077d5234829e46bbce4f6db https://www.encodeproject.org/files/ENCFF138WXR/@@download/ENCFF138WXR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF515EHW bigWig fold change over control ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF060JAA, ENCFF198DHL 255055015 ENCODE Processing Pipeline 35e54fdc869d923227d51ab81a1c0a3b https://www.encodeproject.org/files/ENCFF515EHW/@@download/ENCFF515EHW.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF245QXT bigWig signal p-value ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF198DHL, ENCFF580BHF 385534530 ENCODE Processing Pipeline 7e5ce4f962b89ce99a843c2be55bd254 https://www.encodeproject.org/files/ENCFF245QXT/@@download/ENCFF245QXT.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF242KKL bigWig signal p-value ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF060JAA, ENCFF198DHL 311693748 ENCODE Processing Pipeline c8e2ba2c3d06038e1c34399b80cf47d7 https://www.encodeproject.org/files/ENCFF242KKL/@@download/ENCFF242KKL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF161FRE bigWig signal p-value ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF115QJZ 349828531 ENCODE Processing Pipeline 4cb9a0cee21a068840f0ed249391164c https://www.encodeproject.org/files/ENCFF161FRE/@@download/ENCFF161FRE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF376XYY bigWig signal p-value ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF115QJZ, ENCFF208QQC 432892762 ENCODE Processing Pipeline f89b94d11f068d48d0ef811a3fe689fa https://www.encodeproject.org/files/ENCFF376XYY/@@download/ENCFF376XYY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF777FSS bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF198DHL, ENCFF580BHF 4461725 ENCODE Processing Pipeline b783794844073f2d6fd7f91e69bd81a2 https://www.encodeproject.org/files/ENCFF777FSS/@@download/ENCFF777FSS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF559ZHX bigWig fold change over control ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF115QJZ 257053703 ENCODE Processing Pipeline ca86f6789e8e98830287a69c12f9a318 https://www.encodeproject.org/files/ENCFF559ZHX/@@download/ENCFF559ZHX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF680IJV bigWig fold change over control ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF198DHL, ENCFF580BHF 341440966 ENCODE Processing Pipeline 3ad30498d1c956ec820126c82e39e49d https://www.encodeproject.org/files/ENCFF680IJV/@@download/ENCFF680IJV.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF683OHM bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF060JAA, ENCFF198DHL, ENCFF580BHF 4596851 ENCODE Processing Pipeline e94b976d955ff66be7f9bd883644f91b https://www.encodeproject.org/files/ENCFF683OHM/@@download/ENCFF683OHM.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF876PSQ bigWig fold change over control ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF060JAA, ENCFF198DHL, ENCFF580BHF 520163350 ENCODE Processing Pipeline 874238b545d4f24a4f9e657c7ba73b02 https://www.encodeproject.org/files/ENCFF876PSQ/@@download/ENCFF876PSQ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF211MMB bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF060JAA, ENCFF198DHL 4437499 ENCODE Processing Pipeline 7cfbed440f61158aeef30feba19472d0 https://www.encodeproject.org/files/ENCFF211MMB/@@download/ENCFF211MMB.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF699EPP bigWig fold change over control ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF208QQC 343408061 ENCODE Processing Pipeline 3ba41b521516bc05cbd58a399fdadf9c https://www.encodeproject.org/files/ENCFF699EPP/@@download/ENCFF699EPP.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF839WGK bigWig fold change over control ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF115QJZ, ENCFF208QQC 517245185 ENCODE Processing Pipeline 16e04b0a116dbcb5ba271a5ab61c915d https://www.encodeproject.org/files/ENCFF839WGK/@@download/ENCFF839WGK.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF147OBI bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF211MMB 10680773 ENCODE Processing Pipeline 308f03cc75b24a777774e65bfe87b947 https://www.encodeproject.org/files/ENCFF147OBI/@@download/ENCFF147OBI.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF547RPO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF430EIY 1132805 ENCODE Processing Pipeline 268722062980c71c41f56881228e585b https://www.encodeproject.org/files/ENCFF547RPO/@@download/ENCFF547RPO.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF557WBC bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF208QQC 4453892 ENCODE Processing Pipeline 926c944a4d317e2935d48c3895b63e25 https://www.encodeproject.org/files/ENCFF557WBC/@@download/ENCFF557WBC.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF342BUK bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF777FSS 10875818 ENCODE Processing Pipeline 9190f968cbd076801285df850bd770c7 https://www.encodeproject.org/files/ENCFF342BUK/@@download/ENCFF342BUK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF430EIY bed narrowPeak conservative idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF211MMB, ENCFF683OHM, ENCFF777FSS 651964 ENCODE Processing Pipeline 6eeb0435eee8ddc73dfa8c071d9b9546 https://www.encodeproject.org/files/ENCFF430EIY/@@download/ENCFF430EIY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF642GMA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF282QFS 1141235 ENCODE Processing Pipeline 7dd64f8b7f4e533c28ecee24a3c8a268 https://www.encodeproject.org/files/ENCFF642GMA/@@download/ENCFF642GMA.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF613KOH bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF523OCI 10718581 ENCODE Processing Pipeline f56481f51a1f9aca3a5498d56bf9fc75 https://www.encodeproject.org/files/ENCFF613KOH/@@download/ENCFF613KOH.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF775KYJ bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF683OHM 10612229 ENCODE Processing Pipeline 77e53658dce0377066c9d7ac7c10a304 https://www.encodeproject.org/files/ENCFF775KYJ/@@download/ENCFF775KYJ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF523OCI bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF115QJZ 4453213 ENCODE Processing Pipeline fca3129b0cb5b0f9cffa98ef51035af9 https://www.encodeproject.org/files/ENCFF523OCI/@@download/ENCFF523OCI.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF282QFS bed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF211MMB, ENCFF683OHM, ENCFF777FSS 658629 ENCODE Processing Pipeline 5cb966acd351fac7cc8466d60a973372 https://www.encodeproject.org/files/ENCFF282QFS/@@download/ENCFF282QFS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF420JAA bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF115QJZ, ENCFF208QQC 4578988 ENCODE Processing Pipeline 61e90b4c6a18f48b85f616bc669ceec5 https://www.encodeproject.org/files/ENCFF420JAA/@@download/ENCFF420JAA.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF044CHS bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF420JAA 10588108 ENCODE Processing Pipeline 2167eeed7b9a8b7bbb566ce11e82b12c https://www.encodeproject.org/files/ENCFF044CHS/@@download/ENCFF044CHS.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF061BWD bigBed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF557WBC 10874450 ENCODE Processing Pipeline 2c98fe2fa9acc0eecd03212c7c3ccdb0 https://www.encodeproject.org/files/ENCFF061BWD/@@download/ENCFF061BWD.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF401MQL bed narrowPeak conservative idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF420JAA, ENCFF523OCI, ENCFF557WBC 649474 ENCODE Processing Pipeline 9dabac96e36309ed65dc1cb289c51079 https://www.encodeproject.org/files/ENCFF401MQL/@@download/ENCFF401MQL.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF750KVF bed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF420JAA, ENCFF523OCI, ENCFF557WBC 651805 ENCODE Processing Pipeline 1d2b07e126b8f68833a01e56d447c465 https://www.encodeproject.org/files/ENCFF750KVF/@@download/ENCFF750KVF.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF061AZP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF401MQL 1129191 ENCODE Processing Pipeline edbd47525f1baf2226e477baaf990164 https://www.encodeproject.org/files/ENCFF061AZP/@@download/ENCFF061AZP.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF086RPK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF750KVF 1131805 ENCODE Processing Pipeline 9e3292280ebd7722ba6a2aeaeeb38b25 https://www.encodeproject.org/files/ENCFF086RPK/@@download/ENCFF086RPK.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF000RAG bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000RAT 860268773 Richard Myers, HAIB 74e68a650822e88a0f98ba2075c77e47 https://www.encodeproject.org/files/ENCFF000RAG/@@download/ENCFF000RAG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RAH bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000RAW 1303017375 Richard Myers, HAIB 72651a3100e95c30973a349e48f4e658 https://www.encodeproject.org/files/ENCFF000RAH/@@download/ENCFF000RAH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RAI bigBed broadPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UPT 675700 Richard Myers, HAIB b6bca9745587d7bb37aad664d830732d https://www.encodeproject.org/files/ENCFF000RAI/@@download/ENCFF000RAI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RAJ bigBed broadPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UPU 327899 Richard Myers, HAIB d8505ca40ead79915855b2d7429154bd https://www.encodeproject.org/files/ENCFF000RAJ/@@download/ENCFF000RAJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RAM bigWig raw signal ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 24111286 Richard Myers, HAIB 8487ed20bac1a25e7a0f12258f582074 https://www.encodeproject.org/files/ENCFF000RAM/@@download/ENCFF000RAM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RAN bigWig raw signal ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 15544156 Richard Myers, HAIB 8106458065690879232ed5fe16da5312 https://www.encodeproject.org/files/ENCFF000RAN/@@download/ENCFF000RAN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RAT fastq reads ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 821196319 Richard Myers, HAIB 980432fe5e9cb3b7cf776b708627005b https://www.encodeproject.org/files/ENCFF000RAT/@@download/ENCFF000RAT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RAW fastq reads ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1315913702 Richard Myers, HAIB 8e3e0f849840113c562016b492abf600 https://www.encodeproject.org/files/ENCFF000RAW/@@download/ENCFF000RAW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UPT bed broadPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 381032 Richard Myers, HAIB 78357e2915ccbc95ee08327020326d34 https://www.encodeproject.org/files/ENCFF001UPT/@@download/ENCFF001UPT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UPU bed broadPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 195903 Richard Myers, HAIB 88846273b402afee37808dac50767649 https://www.encodeproject.org/files/ENCFF001UPU/@@download/ENCFF001UPU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CNK bed narrowPeak optimal idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 250627 ENCODE Consortium Analysis Working Group fd4b8b1a0e1a4b5dad3863cfb09546b7 https://www.encodeproject.org/files/ENCFF002CNK/@@download/ENCFF002CNK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF818TQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNK 530204 ENCODE Consortium d9e3f67d72c9f4384e59f4e334ebc12b https://www.encodeproject.org/files/ENCFF818TQV/@@download/ENCFF818TQV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF959UTG bam unfiltered alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RAT, ENCFF643CGH 964475763 ENCODE Processing Pipeline 5f93fc5408e041159c9465a9fc588e5a https://www.encodeproject.org/files/ENCFF959UTG/@@download/ENCFF959UTG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF247ZIP bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RAT, ENCFF643CGH 484647113 ENCODE Processing Pipeline 4872d18fcbbce241e2f0184b659fead7 https://www.encodeproject.org/files/ENCFF247ZIP/@@download/ENCFF247ZIP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF968TGT bam unfiltered alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RAW, ENCFF643CGH 1414897400 ENCODE Processing Pipeline 4bbcdad3d022205740722a8175e1213b https://www.encodeproject.org/files/ENCFF968TGT/@@download/ENCFF968TGT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF705JKT bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RAW, ENCFF643CGH 723512027 ENCODE Processing Pipeline de0bdba2a70055ce27567726ac1f5144 https://www.encodeproject.org/files/ENCFF705JKT/@@download/ENCFF705JKT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF463UJR bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RAT, ENCFF807MUK 484930120 ENCODE Processing Pipeline 1854e1fd83708304d7fb17ae170b2d48 https://www.encodeproject.org/files/ENCFF463UJR/@@download/ENCFF463UJR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF810TRR bam unfiltered alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RAT, ENCFF807MUK 962594846 ENCODE Processing Pipeline 5aac42263cf3dd62d2c871ac7e3d92e3 https://www.encodeproject.org/files/ENCFF810TRR/@@download/ENCFF810TRR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF843JEA bam unfiltered alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RAW, ENCFF807MUK 1410608208 ENCODE Processing Pipeline adac1a1285e0397ab7875dceb43de8b4 https://www.encodeproject.org/files/ENCFF843JEA/@@download/ENCFF843JEA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF541WKG bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RAW, ENCFF807MUK 723765570 ENCODE Processing Pipeline 634ac0e06bf8884c16ee83e6caa410b0 https://www.encodeproject.org/files/ENCFF541WKG/@@download/ENCFF541WKG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF168OUK bigWig signal p-value ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF118ENS, ENCFF247ZIP 385990231 ENCODE Processing Pipeline e2001d82e8e5a3d179a53fe130c930bb https://www.encodeproject.org/files/ENCFF168OUK/@@download/ENCFF168OUK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF859QNW bigWig signal p-value ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF705JKT 467993852 ENCODE Processing Pipeline 3e5e77abdcebca01fa69074b964b022f https://www.encodeproject.org/files/ENCFF859QNW/@@download/ENCFF859QNW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF038MYV bigWig fold change over control ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF118ENS, ENCFF247ZIP 255349109 ENCODE Processing Pipeline 812818fc0ec5ccdd59d52f7dd4de46a4 https://www.encodeproject.org/files/ENCFF038MYV/@@download/ENCFF038MYV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF892HXM bigWig signal p-value ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118ENS, ENCFF247ZIP, ENCFF705JKT 596091202 ENCODE Processing Pipeline 17f4450374fd8a083b36d0582c835b4a https://www.encodeproject.org/files/ENCFF892HXM/@@download/ENCFF892HXM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF615HGB bigWig fold change over control ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF705JKT 351304338 ENCODE Processing Pipeline 4573d0d73c2dfba674e56357a489aada https://www.encodeproject.org/files/ENCFF615HGB/@@download/ENCFF615HGB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF689BDC bigWig fold change over control ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118ENS, ENCFF247ZIP, ENCFF705JKT 547391149 ENCODE Processing Pipeline 9ae2f162da716a8225a5de5106136905 https://www.encodeproject.org/files/ENCFF689BDC/@@download/ENCFF689BDC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF056ITA bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118ENS, ENCFF247ZIP, ENCFF705JKT 5539909 ENCODE Processing Pipeline 4c47069b4cb5c80a3cf32d1233e5f945 https://www.encodeproject.org/files/ENCFF056ITA/@@download/ENCFF056ITA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF709QNF bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF118ENS, ENCFF247ZIP 4912173 ENCODE Processing Pipeline 0f181963f76dc555f761cf7729fce993 https://www.encodeproject.org/files/ENCFF709QNF/@@download/ENCFF709QNF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF743ETN bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF705JKT 4534635 ENCODE Processing Pipeline 8a7e06364bed3658ea3956e0d96158f8 https://www.encodeproject.org/files/ENCFF743ETN/@@download/ENCFF743ETN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF492ZIJ bigBed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF056ITA 11213715 ENCODE Processing Pipeline fca8437234bedf3a5b22e49f6568cd30 https://www.encodeproject.org/files/ENCFF492ZIJ/@@download/ENCFF492ZIJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF111BVK bigBed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF743ETN 10789291 ENCODE Processing Pipeline fb4d7dcb4f5727140855626fcde36ef8 https://www.encodeproject.org/files/ENCFF111BVK/@@download/ENCFF111BVK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF642XNV bigBed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF709QNF 10687368 ENCODE Processing Pipeline c2648ccecddc84b031e44c76ff18f93e https://www.encodeproject.org/files/ENCFF642XNV/@@download/ENCFF642XNV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF256ECY bed narrowPeak conservative idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF056ITA, ENCFF419RSJ, ENCFF709QNF, ENCFF743ETN 247085 ENCODE Processing Pipeline 1c62fa6ec60a54468b00fa2699aabe49 https://www.encodeproject.org/files/ENCFF256ECY/@@download/ENCFF256ECY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF540FXB bed narrowPeak optimal idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF056ITA, ENCFF419RSJ, ENCFF709QNF, ENCFF743ETN 296524 ENCODE Processing Pipeline bab85df715787bd56fdc6fa68444c8d1 https://www.encodeproject.org/files/ENCFF540FXB/@@download/ENCFF540FXB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF281WIN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF256ECY 520734 ENCODE Processing Pipeline eb379a8136c8add134ee09dab12540e3 https://www.encodeproject.org/files/ENCFF281WIN/@@download/ENCFF281WIN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF542DTM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF540FXB 594730 ENCODE Processing Pipeline fb49144b30dbf3920e35c65ef4307955 https://www.encodeproject.org/files/ENCFF542DTM/@@download/ENCFF542DTM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF587KLV bigWig fold change over control ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF463UJR 257087669 ENCODE Processing Pipeline 03070050f5f022b90f6d192e99724243 https://www.encodeproject.org/files/ENCFF587KLV/@@download/ENCFF587KLV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF728AHV bigWig fold change over control ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF080EVD, ENCFF463UJR, ENCFF541WKG 546406020 ENCODE Processing Pipeline 79481fce548009c435afbabcee91643e https://www.encodeproject.org/files/ENCFF728AHV/@@download/ENCFF728AHV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF376SMA bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF541WKG 4536576 ENCODE Processing Pipeline 33699052c085da46547cf24d1246a236 https://www.encodeproject.org/files/ENCFF376SMA/@@download/ENCFF376SMA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF267NJQ bigWig signal p-value ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF541WKG 551357893 ENCODE Processing Pipeline 873a454fb5dcd74c392a0be09e00c207 https://www.encodeproject.org/files/ENCFF267NJQ/@@download/ENCFF267NJQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF950YSP bigWig signal p-value ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF080EVD, ENCFF463UJR, ENCFF541WKG 596344146 ENCODE Processing Pipeline ea240fbeca8c28a98538532a9f8d9ec1 https://www.encodeproject.org/files/ENCFF950YSP/@@download/ENCFF950YSP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF713IUK bigWig fold change over control ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF541WKG 351176985 ENCODE Processing Pipeline ffcb51c3d314456f7078c84de56285d2 https://www.encodeproject.org/files/ENCFF713IUK/@@download/ENCFF713IUK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF443TYH bigWig signal p-value ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF463UJR 381650324 ENCODE Processing Pipeline a13b79da1cf0db13186a16512d848359 https://www.encodeproject.org/files/ENCFF443TYH/@@download/ENCFF443TYH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF546CXR bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF463UJR 4984384 ENCODE Processing Pipeline 169155a13bffa2c6c60910b7437a4829 https://www.encodeproject.org/files/ENCFF546CXR/@@download/ENCFF546CXR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF375CGH bigBed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF546CXR 10765983 ENCODE Processing Pipeline 7268a3c6d9b6cd7c281677810e19ed46 https://www.encodeproject.org/files/ENCFF375CGH/@@download/ENCFF375CGH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF356RWD bed narrowPeak conservative idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF046BKR, ENCFF376SMA, ENCFF546CXR 246767 ENCODE Processing Pipeline 26fe10030847b1b3b50b1707fc43d6b2 https://www.encodeproject.org/files/ENCFF356RWD/@@download/ENCFF356RWD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF793TAP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF356RWD 519052 ENCODE Processing Pipeline 1e7c44f9cfe8886d4f002c7e01ac655f https://www.encodeproject.org/files/ENCFF793TAP/@@download/ENCFF793TAP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF048PVW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF781PAL 591542 ENCODE Processing Pipeline bfbba4e0582d5887f93237bb1386912b https://www.encodeproject.org/files/ENCFF048PVW/@@download/ENCFF048PVW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF046BKR bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF080EVD, ENCFF463UJR, ENCFF541WKG 5541105 ENCODE Processing Pipeline fa387a28297f12b46a8b7cc43937be0f https://www.encodeproject.org/files/ENCFF046BKR/@@download/ENCFF046BKR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF264JNR bigBed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF376SMA 10787314 ENCODE Processing Pipeline 874f4e07673809a140996cfb1fe255ec https://www.encodeproject.org/files/ENCFF264JNR/@@download/ENCFF264JNR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF517KJX bigBed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF046BKR 11208771 ENCODE Processing Pipeline 1eab27c7fc7e806b6392bf15b3d8ce5e https://www.encodeproject.org/files/ENCFF517KJX/@@download/ENCFF517KJX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF781PAL bed narrowPeak optimal idr thresholded peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF046BKR, ENCFF376SMA, ENCFF546CXR 296216 ENCODE Processing Pipeline 49f87a41db2a31840fd1bfc3d95f27f6 https://www.encodeproject.org/files/ENCFF781PAL/@@download/ENCFF781PAL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNN bigBed broadPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHG 1403417 Richard Myers, HAIB ed89468dcd93d42944d4026dea0ac096 https://www.encodeproject.org/files/ENCFF000PNN/@@download/ENCFF000PNN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNO bigBed broadPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHH 1157642 Richard Myers, HAIB 386efa18ebd25006049e027175f07b98 https://www.encodeproject.org/files/ENCFF000PNO/@@download/ENCFF000PNO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNP bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PNW 1031489285 Richard Myers, HAIB b1b7e8b2e580cfeac7846fef16df0984 https://www.encodeproject.org/files/ENCFF000PNP/@@download/ENCFF000PNP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNQ bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PNY 1121831716 Richard Myers, HAIB b8ae7b37dcc0958d5203f9a999b50c16 https://www.encodeproject.org/files/ENCFF000PNQ/@@download/ENCFF000PNQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNR bigWig raw signal ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 58671030 Richard Myers, HAIB 2c82ea025b86ecdcb47b7d77f16bf57b https://www.encodeproject.org/files/ENCFF000PNR/@@download/ENCFF000PNR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PNS bigWig raw signal ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 47233859 Richard Myers, HAIB 1c141698d074844d9815198b66abcc06 https://www.encodeproject.org/files/ENCFF000PNS/@@download/ENCFF000PNS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PNW fastq reads ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1020915050 Richard Myers, HAIB 244eec41da012ebf76013155af5f1c05 https://www.encodeproject.org/files/ENCFF000PNW/@@download/ENCFF000PNW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PNY fastq reads ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1020962697 Richard Myers, HAIB 5365466439935974b41b78173bedfaf6 https://www.encodeproject.org/files/ENCFF000PNY/@@download/ENCFF000PNY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UHG bed broadPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 925908 Richard Myers, HAIB c9da89f019c87b017506c2ff857c3ae6 https://www.encodeproject.org/files/ENCFF001UHG/@@download/ENCFF001UHG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UHH bed broadPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 775540 Richard Myers, HAIB e8c47f26d214c45bcedd51737d8bf1a0 https://www.encodeproject.org/files/ENCFF001UHH/@@download/ENCFF001UHH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CKY bed narrowPeak optimal idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1262235 ENCODE Consortium Analysis Working Group 78cc5c13e7d3c26e1d83abdcaea59804 https://www.encodeproject.org/files/ENCFF002CKY/@@download/ENCFF002CKY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF873WDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKY 2615667 ENCODE Consortium 19f03a7fe1f18b9e895195ca476e58dd https://www.encodeproject.org/files/ENCFF873WDR/@@download/ENCFF873WDR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF713OAW bam unfiltered alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNW, ENCFF643CGH 1254597350 ENCODE Processing Pipeline 989bede75355ec594e2eaccb0b4f7e2d https://www.encodeproject.org/files/ENCFF713OAW/@@download/ENCFF713OAW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF185SAW bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNW, ENCFF643CGH 655572924 ENCODE Processing Pipeline f363e85f6efd27fc979241ad64bf54e1 https://www.encodeproject.org/files/ENCFF185SAW/@@download/ENCFF185SAW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF918IEO bam unfiltered alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNY, ENCFF643CGH 1314423622 ENCODE Processing Pipeline ae30541baa65794b5659f54f14baa549 https://www.encodeproject.org/files/ENCFF918IEO/@@download/ENCFF918IEO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF140VTG bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNY, ENCFF643CGH 756551127 ENCODE Processing Pipeline 884ab40b7a624235a7024c7c89b6caae https://www.encodeproject.org/files/ENCFF140VTG/@@download/ENCFF140VTG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF218VYQ bam unfiltered alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNY, ENCFF807MUK 1310602259 ENCODE Processing Pipeline 6aefbbc57de102d8b48653942f8e029e https://www.encodeproject.org/files/ENCFF218VYQ/@@download/ENCFF218VYQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF514GQU bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNY, ENCFF807MUK 756814153 ENCODE Processing Pipeline 7c1055129961c02cac0e4167ccaa7abd https://www.encodeproject.org/files/ENCFF514GQU/@@download/ENCFF514GQU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF875DVJ bam unfiltered alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNW, ENCFF807MUK 1251311420 ENCODE Processing Pipeline ef5c4454767dcda0ebf242080fb026df https://www.encodeproject.org/files/ENCFF875DVJ/@@download/ENCFF875DVJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF977AXY bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNW, ENCFF807MUK 655914006 ENCODE Processing Pipeline 6c53651177f60ce4793e3d344fc46617 https://www.encodeproject.org/files/ENCFF977AXY/@@download/ENCFF977AXY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF113AZK bigWig signal p-value ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140VTG, ENCFF185SAW, ENCFF285LVE 557338446 ENCODE Processing Pipeline 91cd56e8387fae3f83d13e2d7bcbbdd0 https://www.encodeproject.org/files/ENCFF113AZK/@@download/ENCFF113AZK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF378QKC bigWig signal p-value ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185SAW, ENCFF285LVE 437579199 ENCODE Processing Pipeline f67d0037e88e433d519b3e13c42aff31 https://www.encodeproject.org/files/ENCFF378QKC/@@download/ENCFF378QKC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF470VYV bigWig signal p-value ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140VTG, ENCFF285LVE 422523700 ENCODE Processing Pipeline 6aadee0d545076f9431661037312523a https://www.encodeproject.org/files/ENCFF470VYV/@@download/ENCFF470VYV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF363QAT bigWig fold change over control ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140VTG, ENCFF285LVE 397386982 ENCODE Processing Pipeline c01589b188f5329bd351114bee0bb8f6 https://www.encodeproject.org/files/ENCFF363QAT/@@download/ENCFF363QAT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF308AJB bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185SAW, ENCFF285LVE 5059618 ENCODE Processing Pipeline 323f77678f37fc6534eee42a3efd0fcb https://www.encodeproject.org/files/ENCFF308AJB/@@download/ENCFF308AJB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF871PVZ bigWig fold change over control ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140VTG, ENCFF185SAW, ENCFF285LVE 603041778 ENCODE Processing Pipeline 61e158a4c6e2f4aea606676e54d7fe45 https://www.encodeproject.org/files/ENCFF871PVZ/@@download/ENCFF871PVZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF802GHT bigWig fold change over control ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185SAW, ENCFF285LVE 321134967 ENCODE Processing Pipeline 503a81b7a39a47ee00db0436cb013ea1 https://www.encodeproject.org/files/ENCFF802GHT/@@download/ENCFF802GHT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF120TCG bigBed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF308AJB 11229311 ENCODE Processing Pipeline 0dd85d268ab3419a790f122737337b34 https://www.encodeproject.org/files/ENCFF120TCG/@@download/ENCFF120TCG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF056ARK bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140VTG, ENCFF285LVE 5016910 ENCODE Processing Pipeline 9b3573603795e6175b22a6cc1be68979 https://www.encodeproject.org/files/ENCFF056ARK/@@download/ENCFF056ARK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF288ELU bigBed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF056ARK 11196713 ENCODE Processing Pipeline fbe19468ff686e106b042db635b2ebf5 https://www.encodeproject.org/files/ENCFF288ELU/@@download/ENCFF288ELU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF874VFZ bed narrowPeak optimal idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF056ARK, ENCFF308AJB, ENCFF419RSJ, ENCFF516YLJ 951570 ENCODE Processing Pipeline 97e393a907713ba35600e4362e84aac4 https://www.encodeproject.org/files/ENCFF874VFZ/@@download/ENCFF874VFZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF516YLJ bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140VTG, ENCFF185SAW, ENCFF285LVE 5499834 ENCODE Processing Pipeline 05e11f9c8473b33f0708f6414f4828d9 https://www.encodeproject.org/files/ENCFF516YLJ/@@download/ENCFF516YLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF231IVZ bigBed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF516YLJ 11498950 ENCODE Processing Pipeline 2b19dc661adaa3f7586a7c550826598b https://www.encodeproject.org/files/ENCFF231IVZ/@@download/ENCFF231IVZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF256RAN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF874VFZ 1658479 ENCODE Processing Pipeline e71983a06d67a2978e50bc8defa138ae https://www.encodeproject.org/files/ENCFF256RAN/@@download/ENCFF256RAN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF671FGG bed narrowPeak conservative idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF056ARK, ENCFF308AJB, ENCFF419RSJ, ENCFF516YLJ 863848 ENCODE Processing Pipeline 11a51986405d07790bb18e1f9fd23fb2 https://www.encodeproject.org/files/ENCFF671FGG/@@download/ENCFF671FGG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF670MDR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF671FGG 1542767 ENCODE Processing Pipeline e2d577c9a2df23f2f974a070334c392e https://www.encodeproject.org/files/ENCFF670MDR/@@download/ENCFF670MDR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF781OSE bigWig signal p-value ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF977AXY 485272309 ENCODE Processing Pipeline d5d0d8a01d9f1cfbeb3d4bd9780d8929 https://www.encodeproject.org/files/ENCFF781OSE/@@download/ENCFF781OSE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF790TVT bigWig signal p-value ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF514GQU 475068456 ENCODE Processing Pipeline 5650a6f6847602d814f74b1efd249670 https://www.encodeproject.org/files/ENCFF790TVT/@@download/ENCFF790TVT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF241POP bigWig fold change over control ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF977AXY 331976556 ENCODE Processing Pipeline 3ef7d6d115235eca97e31188423a901f https://www.encodeproject.org/files/ENCFF241POP/@@download/ENCFF241POP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF689CPO bigWig signal p-value ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF514GQU, ENCFF977AXY 557715446 ENCODE Processing Pipeline ee011f603fe8821aa77f0180944b91d6 https://www.encodeproject.org/files/ENCFF689CPO/@@download/ENCFF689CPO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF176LYO bigWig fold change over control ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF514GQU 398165154 ENCODE Processing Pipeline a57e12d7195dbb6ed369da765b54acfa https://www.encodeproject.org/files/ENCFF176LYO/@@download/ENCFF176LYO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF941EXK bigWig fold change over control ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF514GQU, ENCFF977AXY 599812402 ENCODE Processing Pipeline 47a9b01d423063a92964c4d6be4dae2f https://www.encodeproject.org/files/ENCFF941EXK/@@download/ENCFF941EXK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF020QWB bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF346RZT, ENCFF514GQU, ENCFF977AXY 5501961 ENCODE Processing Pipeline 95de8ba52c1f65732867c45f65a2d8c2 https://www.encodeproject.org/files/ENCFF020QWB/@@download/ENCFF020QWB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF222JLX bigBed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF020QWB 11494885 ENCODE Processing Pipeline c5d8d6b67336d0e5868a601b315c0eb5 https://www.encodeproject.org/files/ENCFF222JLX/@@download/ENCFF222JLX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF374LID bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF514GQU 5018599 ENCODE Processing Pipeline 16f6924aa2674726dc14313b2a69856d https://www.encodeproject.org/files/ENCFF374LID/@@download/ENCFF374LID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF415ZQD bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF977AXY 5058184 ENCODE Processing Pipeline bf0d5046b7b4d57f1e3654576af1f494 https://www.encodeproject.org/files/ENCFF415ZQD/@@download/ENCFF415ZQD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF874XKY bigBed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF415ZQD 11222172 ENCODE Processing Pipeline aa7fba46498f3199233d6378a97c8962 https://www.encodeproject.org/files/ENCFF874XKY/@@download/ENCFF874XKY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF061QPF bed narrowPeak conservative idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF020QWB, ENCFF374LID, ENCFF415ZQD 863543 ENCODE Processing Pipeline d4172fd074a16c13d2de7e6432cead88 https://www.encodeproject.org/files/ENCFF061QPF/@@download/ENCFF061QPF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF017KNC bigBed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374LID 11192373 ENCODE Processing Pipeline 787aba05c4a4ff6998265fcfe707b6fc https://www.encodeproject.org/files/ENCFF017KNC/@@download/ENCFF017KNC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF069FXT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF061QPF 1541146 ENCODE Processing Pipeline 30b307b6e1e1d90ccc27d7a754bc50a8 https://www.encodeproject.org/files/ENCFF069FXT/@@download/ENCFF069FXT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF072UEX bed narrowPeak optimal idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF020QWB, ENCFF374LID, ENCFF415ZQD 944041 ENCODE Processing Pipeline 1ff2fbb867b1a9a4b26928036292ae06 https://www.encodeproject.org/files/ENCFF072UEX/@@download/ENCFF072UEX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF279QUD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF072UEX 1647196 ENCODE Processing Pipeline 6a938c164c58075e0f33a141f97b6d83 https://www.encodeproject.org/files/ENCFF279QUD/@@download/ENCFF279QUD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QCT bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QDH 1160484172 Richard Myers, HAIB b1b4dcb51da6fb67a786ddd60fd651af https://www.encodeproject.org/files/ENCFF000QCT/@@download/ENCFF000QCT.bam hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCU bigBed broadPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UKP 348395 Richard Myers, HAIB 2b59fc2ff6d1be97356557186c186d81 https://www.encodeproject.org/files/ENCFF000QCU/@@download/ENCFF000QCU.bigBed hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCV bigBed broadPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UKQ 520351 Richard Myers, HAIB 1665d624b7e1d5177e6310cfb9feb5f0 https://www.encodeproject.org/files/ENCFF000QCV/@@download/ENCFF000QCV.bigBed hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCY bigWig raw signal ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 1 15292931 Richard Myers, HAIB 330d4387d621d861e56923176e27ef72 https://www.encodeproject.org/files/ENCFF000QCY/@@download/ENCFF000QCY.bigWig hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000QCZ bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QDJ 1510774310 Richard Myers, HAIB eda2ab07e66552a27d1b05ffe90fafd5 https://www.encodeproject.org/files/ENCFF000QCZ/@@download/ENCFF000QCZ.bam hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QDA bigWig raw signal ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 1 21203744 Richard Myers, HAIB 58d94ccc35edefaa79eb08d3df13e6ef https://www.encodeproject.org/files/ENCFF000QDA/@@download/ENCFF000QDA.bigWig hg19 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000QDH fastq reads ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1119231529 Richard Myers, HAIB 5d09c14c17a2415631baae8e382669b0 https://www.encodeproject.org/files/ENCFF000QDH/@@download/ENCFF000QDH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QDJ fastq reads ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1476342849 Richard Myers, HAIB 05418c532444c1a97167b1c9c4fcea3e https://www.encodeproject.org/files/ENCFF000QDJ/@@download/ENCFF000QDJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001UKP bed broadPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 1 187649 Richard Myers, HAIB 75044ed4b50141c9407944a29fc6f154 https://www.encodeproject.org/files/ENCFF001UKP/@@download/ENCFF001UKP.bed.gz hg19 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001UKQ bed broadPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 1 329971 Richard Myers, HAIB 99c5e56d15b4d804a40eb6f17617ab57 https://www.encodeproject.org/files/ENCFF001UKQ/@@download/ENCFF001UKQ.bed.gz hg19 archived low read length, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CMG bed narrowPeak optimal idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 315726 ENCODE Consortium Analysis Working Group 1d1567ffccbd267df03c88c0b848fb7a https://www.encodeproject.org/files/ENCFF002CMG/@@download/ENCFF002CMG.bed.gz hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF217NGN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CMG 690667 ENCODE Consortium a7d8aedb7fd36829c76975c71e41cc80 https://www.encodeproject.org/files/ENCFF217NGN/@@download/ENCFF217NGN.bigBed hg19 archived low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF271YAJ bam unfiltered alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QDH, ENCFF643CGH 1266209804 ENCODE Processing Pipeline 4a7787c521913708a048d282026911f9 https://www.encodeproject.org/files/ENCFF271YAJ/@@download/ENCFF271YAJ.bam GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF491DUD bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QDH, ENCFF643CGH 838143169 ENCODE Processing Pipeline 68835c98d12bf80ca87aceae4ea715d6 https://www.encodeproject.org/files/ENCFF491DUD/@@download/ENCFF491DUD.bam GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF079DUY bam unfiltered alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QDJ, ENCFF643CGH 1596593688 ENCODE Processing Pipeline 4bf78d37efc002f6f8b5cd7e41551fbb https://www.encodeproject.org/files/ENCFF079DUY/@@download/ENCFF079DUY.bam GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF112WHF bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QDJ, ENCFF643CGH 834158636 ENCODE Processing Pipeline 737a77a7329a778a1db4508694816d23 https://www.encodeproject.org/files/ENCFF112WHF/@@download/ENCFF112WHF.bam GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF922XZM bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QDH, ENCFF807MUK 838568154 ENCODE Processing Pipeline 83f43f6128f5f6870423375e7c88aa36 https://www.encodeproject.org/files/ENCFF922XZM/@@download/ENCFF922XZM.bam hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF667QID bam unfiltered alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QDH, ENCFF807MUK 1263717040 ENCODE Processing Pipeline 2f5af03dcef1244a000784a2e77d0bbe https://www.encodeproject.org/files/ENCFF667QID/@@download/ENCFF667QID.bam hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF468QVC bam unfiltered alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QDJ, ENCFF807MUK 1593465870 ENCODE Processing Pipeline 761ca028a3ebb1362423ca09c82bce94 https://www.encodeproject.org/files/ENCFF468QVC/@@download/ENCFF468QVC.bam hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF183MYT bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QDJ, ENCFF807MUK 834574217 ENCODE Processing Pipeline 96ce150872f7d4e1af336fa348ef2772 https://www.encodeproject.org/files/ENCFF183MYT/@@download/ENCFF183MYT.bam hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF780FJX bigWig signal p-value ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF491DUD, ENCFF836OEO 654761975 ENCODE Processing Pipeline 060cca211f4d1820a427ce8678c946fc https://www.encodeproject.org/files/ENCFF780FJX/@@download/ENCFF780FJX.bigWig GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF526JYS bigWig signal p-value ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF112WHF, ENCFF836OEO 613960516 ENCODE Processing Pipeline fa1477a07ff07818fcb9e01f69f973b6 https://www.encodeproject.org/files/ENCFF526JYS/@@download/ENCFF526JYS.bigWig GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF813JIT bigWig signal p-value ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF112WHF, ENCFF491DUD, ENCFF836OEO 827809912 ENCODE Processing Pipeline 72312e1c14c95522901683af83d57b7e https://www.encodeproject.org/files/ENCFF813JIT/@@download/ENCFF813JIT.bigWig GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF717BCO bigWig fold change over control ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF491DUD, ENCFF836OEO 519842501 ENCODE Processing Pipeline 33007d49ba914e0222553e95b23a6d20 https://www.encodeproject.org/files/ENCFF717BCO/@@download/ENCFF717BCO.bigWig GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF239VGO bigWig fold change over control ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF112WHF, ENCFF836OEO 513198206 ENCODE Processing Pipeline 177f5052766cd0c83df6c027c8684029 https://www.encodeproject.org/files/ENCFF239VGO/@@download/ENCFF239VGO.bigWig GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF706GUM bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF491DUD, ENCFF836OEO 6268388 ENCODE Processing Pipeline 539ce4eb7c3b405d0b061c71a74b8bcb https://www.encodeproject.org/files/ENCFF706GUM/@@download/ENCFF706GUM.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF282KQX bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF112WHF, ENCFF836OEO 6526092 ENCODE Processing Pipeline 718f440292da58cd51b99a8121b7bf3d https://www.encodeproject.org/files/ENCFF282KQX/@@download/ENCFF282KQX.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF668SKC bigWig fold change over control ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF112WHF, ENCFF491DUD, ENCFF836OEO 807417593 ENCODE Processing Pipeline 8b1e576e846e06f35350cf299c426b0d https://www.encodeproject.org/files/ENCFF668SKC/@@download/ENCFF668SKC.bigWig GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF762ZDW bigBed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF970LID 12789980 ENCODE Processing Pipeline cb289db8df912544b9805fcf8af5c2e1 https://www.encodeproject.org/files/ENCFF762ZDW/@@download/ENCFF762ZDW.bigBed GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF825CZN bigBed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF706GUM 12996980 ENCODE Processing Pipeline 9511957bdcb8dffa10c2ce9fb5d5abf5 https://www.encodeproject.org/files/ENCFF825CZN/@@download/ENCFF825CZN.bigBed GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF613YPH bed narrowPeak conservative idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF282KQX, ENCFF419RSJ, ENCFF706GUM, ENCFF970LID 301783 ENCODE Processing Pipeline c3ee9d8cb0d6c85dbde80b35e9a28ead https://www.encodeproject.org/files/ENCFF613YPH/@@download/ENCFF613YPH.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF706UMH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF613YPH 670552 ENCODE Processing Pipeline 05277c09a50dd2d9b2ff30ffe5773525 https://www.encodeproject.org/files/ENCFF706UMH/@@download/ENCFF706UMH.bigBed GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF800QDU bed narrowPeak optimal idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF282KQX, ENCFF419RSJ, ENCFF706GUM, ENCFF970LID 365755 ENCODE Processing Pipeline 6eec23a48cdde52ad1922299a27a72ad https://www.encodeproject.org/files/ENCFF800QDU/@@download/ENCFF800QDU.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF079KZJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF800QDU 765834 ENCODE Processing Pipeline bcca0bec94a80d1a02f66c4160da7787 https://www.encodeproject.org/files/ENCFF079KZJ/@@download/ENCFF079KZJ.bigBed GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF970LID bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF112WHF, ENCFF491DUD, ENCFF836OEO 6973318 ENCODE Processing Pipeline 5699a10f512ad737a3557ab65c6d76d4 https://www.encodeproject.org/files/ENCFF970LID/@@download/ENCFF970LID.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF379OZC bigBed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF282KQX 12792240 ENCODE Processing Pipeline beeeacf12cc13a54a548b7ef4bd418d6 https://www.encodeproject.org/files/ENCFF379OZC/@@download/ENCFF379OZC.bigBed GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF412XML bigWig fold change over control ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF183MYT, ENCFF522HDC 498563391 ENCODE Processing Pipeline 8c2d70a2279067e18d55c1f88eb827d2 https://www.encodeproject.org/files/ENCFF412XML/@@download/ENCFF412XML.bigWig hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF953HED bigBed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF475WRI 12774765 ENCODE Processing Pipeline e94528f0f5e323f089ccb5c2dc78f02f https://www.encodeproject.org/files/ENCFF953HED/@@download/ENCFF953HED.bigBed hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF123EYE bigBed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF647VTS 12774493 ENCODE Processing Pipeline 64898d8b404a67230f01dc72a8ba160a https://www.encodeproject.org/files/ENCFF123EYE/@@download/ENCFF123EYE.bigBed hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF108AJN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF881QBT 762809 ENCODE Processing Pipeline ba63a57aaf00b99ed6ccaf425fa0bab2 https://www.encodeproject.org/files/ENCFF108AJN/@@download/ENCFF108AJN.bigBed hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF868YJU bigWig signal p-value ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF922XZM 550474105 ENCODE Processing Pipeline 7b9ff8971886129436f135b3640c5d68 https://www.encodeproject.org/files/ENCFF868YJU/@@download/ENCFF868YJU.bigWig hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF475WRI bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF183MYT, ENCFF522HDC 6517388 ENCODE Processing Pipeline c4e7999b743103ac6a463192629ddcf9 https://www.encodeproject.org/files/ENCFF475WRI/@@download/ENCFF475WRI.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF123RCO bigWig signal p-value ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF183MYT, ENCFF522HDC 564222684 ENCODE Processing Pipeline d63f9dc8b5232fe1e416b525da1855df https://www.encodeproject.org/files/ENCFF123RCO/@@download/ENCFF123RCO.bigWig hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF226GBL bigWig signal p-value ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF183MYT, ENCFF522HDC, ENCFF922XZM 861767526 ENCODE Processing Pipeline d5aff30f217ecfeeedc54d7767aeb41b https://www.encodeproject.org/files/ENCFF226GBL/@@download/ENCFF226GBL.bigWig hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF070CZW bed narrowPeak conservative idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF357MIU, ENCFF475WRI, ENCFF647VTS 302845 ENCODE Processing Pipeline effd533a97c7beb2db00b6405deeded7 https://www.encodeproject.org/files/ENCFF070CZW/@@download/ENCFF070CZW.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF232ALQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF070CZW 669856 ENCODE Processing Pipeline 6a62f8c7d71bdad2fef831f8707eb784 https://www.encodeproject.org/files/ENCFF232ALQ/@@download/ENCFF232ALQ.bigBed hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF157IUB bigWig fold change over control ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF922XZM 520115567 ENCODE Processing Pipeline d71185311ecf9c8d6b10e51a9b3410e4 https://www.encodeproject.org/files/ENCFF157IUB/@@download/ENCFF157IUB.bigWig hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF746UXC bigWig fold change over control ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF183MYT, ENCFF522HDC, ENCFF922XZM 830890607 ENCODE Processing Pipeline 92b37369ce99c840655e8f8976e1799d https://www.encodeproject.org/files/ENCFF746UXC/@@download/ENCFF746UXC.bigWig hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF647VTS bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF183MYT, ENCFF522HDC, ENCFF922XZM 6965069 ENCODE Processing Pipeline dd858bedaafc16979abfd393ada9814b https://www.encodeproject.org/files/ENCFF647VTS/@@download/ENCFF647VTS.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF881QBT bed narrowPeak optimal idr thresholded peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF357MIU, ENCFF475WRI, ENCFF647VTS 363996 ENCODE Processing Pipeline 8a230e2d708194877fa300a482c1d92a https://www.encodeproject.org/files/ENCFF881QBT/@@download/ENCFF881QBT.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF357MIU bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF922XZM 6322452 ENCODE Processing Pipeline 6bd5eb15d02d727dec9f873ffc478a67 https://www.encodeproject.org/files/ENCFF357MIU/@@download/ENCFF357MIU.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF023RQV bigBed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF357MIU 12987320 ENCODE Processing Pipeline f54fbbda281a65b0858bf0b9376b48e9 https://www.encodeproject.org/files/ENCFF023RQV/@@download/ENCFF023RQV.bigBed hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NMN bam alignments ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NNH 1617747605 Richard Myers, HAIB 540283b4285598a5d9c8323209ffd83d https://www.encodeproject.org/files/ENCFF000NMN/@@download/ENCFF000NMN.bam hg19 released biological replicates with identical biosample ENCFF000NMO bam alignments ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NNC 1138592048 Richard Myers, HAIB 17056588af2cf3cae2499eb9169c291a https://www.encodeproject.org/files/ENCFF000NMO/@@download/ENCFF000NMO.bam hg19 released biological replicates with identical biosample ENCFF000NMP bigBed broadPeak peaks ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TUY 223279 Richard Myers, HAIB ca3f9bfb5bfb1710b1eb42b6121d2ee4 https://www.encodeproject.org/files/ENCFF000NMP/@@download/ENCFF000NMP.bigBed hg19 released biological replicates with identical biosample ENCFF000NMQ bigBed broadPeak peaks ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TUX 229640 Richard Myers, HAIB f7908da651d6701843b6f8b94c39a086 https://www.encodeproject.org/files/ENCFF000NMQ/@@download/ENCFF000NMQ.bigBed hg19 released biological replicates with identical biosample ENCFF000NMS bigWig raw signal ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 159247795 Richard Myers, HAIB 35f9eb5da728438349826c9d11fc36e8 https://www.encodeproject.org/files/ENCFF000NMS/@@download/ENCFF000NMS.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NMU bigWig raw signal ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 131030254 Richard Myers, HAIB c38b2fe44093675a6d74637c591279dd https://www.encodeproject.org/files/ENCFF000NMU/@@download/ENCFF000NMU.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NNC fastq reads ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1152482957 Richard Myers, HAIB 0da4888c5799883164b78e88bd471845 https://www.encodeproject.org/files/ENCFF000NNC/@@download/ENCFF000NNC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF000NNH fastq reads ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1608296563 Richard Myers, HAIB 97c458e7801fb7b1c2306919d5f0d462 https://www.encodeproject.org/files/ENCFF000NNH/@@download/ENCFF000NNH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TUX bed broadPeak peaks ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 111572 Richard Myers, HAIB 4da87f06aab0042e790c6520528bb17a https://www.encodeproject.org/files/ENCFF001TUX/@@download/ENCFF001TUX.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TUY bed broadPeak peaks ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 100383 Richard Myers, HAIB 304f36296aa50f8ca1c6250f66fbb204 https://www.encodeproject.org/files/ENCFF001TUY/@@download/ENCFF001TUY.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001RUJ fastq reads ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 1 50 single-ended 1345596780 Richard Myers, HAIB e694beea040d38d80927ddcade0b2921 SRA:SRR5331592 https://www.encodeproject.org/files/ENCFF001RUJ/@@download/ENCFF001RUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVO/ released low read depth, antibody characterized with exemption ENCFF001RUN fastq reads ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 1 50 single-ended 1805177072 Richard Myers, HAIB 6697eb0cf1ef6f7cb088e730b72bff7d SRA:SRR5331593 https://www.encodeproject.org/files/ENCFF001RUN/@@download/ENCFF001RUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF001RVP/ released low read depth, antibody characterized with exemption ENCFF395SCA bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF001RUN, ENCFF807MUK 1443391646 ENCODE Processing Pipeline 5f6584251153262f49201dc8121e3b05 https://www.encodeproject.org/files/ENCFF395SCA/@@download/ENCFF395SCA.bam hg19 released low read depth, antibody characterized with exemption ENCFF545MBO bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF001RUJ, ENCFF807MUK 1066478481 ENCODE Processing Pipeline 686787c7d09a8992f3636a6cde1915b7 https://www.encodeproject.org/files/ENCFF545MBO/@@download/ENCFF545MBO.bam hg19 released low read depth, antibody characterized with exemption ENCFF633MKO bigWig signal p-value ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF727QOD 708234187 ENCODE Processing Pipeline 9295d1a2afbf679f8bd82315a06cbfc1 https://www.encodeproject.org/files/ENCFF633MKO/@@download/ENCFF633MKO.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF243WKQ bigWig signal p-value ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF103CZU, ENCFF578ISP 792970952 ENCODE Processing Pipeline 0719bd09b378b24180ed8dc0b23634ac https://www.encodeproject.org/files/ENCFF243WKQ/@@download/ENCFF243WKQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF399JNI bigWig signal p-value ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF103CZU, ENCFF578ISP, ENCFF727QOD 1317915506 ENCODE Processing Pipeline adcc20d6513c79088fd8f99711e4d396 https://www.encodeproject.org/files/ENCFF399JNI/@@download/ENCFF399JNI.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF139HBD bigWig fold change over control ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF103CZU, ENCFF578ISP 685829961 ENCODE Processing Pipeline 61d486b18c429bee7a68c9afcb2d53ad https://www.encodeproject.org/files/ENCFF139HBD/@@download/ENCFF139HBD.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF463HBH bigWig fold change over control ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF727QOD 528043841 ENCODE Processing Pipeline 487169747281e9238754f3380d38b7f6 https://www.encodeproject.org/files/ENCFF463HBH/@@download/ENCFF463HBH.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF557POT bigWig fold change over control ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF103CZU, ENCFF578ISP, ENCFF727QOD 1341401762 ENCODE Processing Pipeline 55bb7b18e471d1e4efa7e5c5fec1c196 https://www.encodeproject.org/files/ENCFF557POT/@@download/ENCFF557POT.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF545NPE bam unfiltered alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUN, ENCFF643CGH 1917593587 ENCODE Processing Pipeline b2a400317e53b99d69d2e38e726d1cfe https://www.encodeproject.org/files/ENCFF545NPE/@@download/ENCFF545NPE.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF570ZZQ bam unfiltered alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUJ, ENCFF643CGH 1425472229 ENCODE Processing Pipeline 2377c56c8e4bff0af870f15daf953a34 https://www.encodeproject.org/files/ENCFF570ZZQ/@@download/ENCFF570ZZQ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF198RTF bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUJ, ENCFF643CGH 1065977334 ENCODE Processing Pipeline 5e98e891be510094f52f76644ba9dd2d https://www.encodeproject.org/files/ENCFF198RTF/@@download/ENCFF198RTF.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF187ZET bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUN, ENCFF643CGH 1442824719 ENCODE Processing Pipeline d56c9d197ccfb5bcb1bd72ded2c2a63b https://www.encodeproject.org/files/ENCFF187ZET/@@download/ENCFF187ZET.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF503MKK bigWig signal p-value ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF121DUE, ENCFF187ZET 749423840 ENCODE Processing Pipeline 50781091932cb3aa5c8f29c8017e32d1 https://www.encodeproject.org/files/ENCFF503MKK/@@download/ENCFF503MKK.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF334NQI bigWig signal p-value ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF198RTF, ENCFF332SVJ 723957946 ENCODE Processing Pipeline 1e845449120d282e93d3ef1cf64fdd0b https://www.encodeproject.org/files/ENCFF334NQI/@@download/ENCFF334NQI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF819ZDX bigWig signal p-value ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF121DUE, ENCFF187ZET, ENCFF198RTF, ENCFF332SVJ 1317457246 ENCODE Processing Pipeline b852dd5bdff8afbaf871030be3b98c2a https://www.encodeproject.org/files/ENCFF819ZDX/@@download/ENCFF819ZDX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF365EHJ bigWig fold change over control ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF121DUE, ENCFF187ZET 668800142 ENCODE Processing Pipeline 9d79b746073f385f8c5b6f25333e75be https://www.encodeproject.org/files/ENCFF365EHJ/@@download/ENCFF365EHJ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF607GBG bigWig fold change over control ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF198RTF, ENCFF332SVJ 532674576 ENCODE Processing Pipeline 374c898175afafe4a7274055125f9c07 https://www.encodeproject.org/files/ENCFF607GBG/@@download/ENCFF607GBG.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF115ALQ bigWig fold change over control ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF121DUE, ENCFF187ZET, ENCFF198RTF, ENCFF332SVJ 1340619794 ENCODE Processing Pipeline a96337a6ef7ebac161d129f837dab035 https://www.encodeproject.org/files/ENCFF115ALQ/@@download/ENCFF115ALQ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF710SZC bigBed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF882SPG 11378532 ENCODE Processing Pipeline e6ae83a74193e3e45b96da1c26ad433c https://www.encodeproject.org/files/ENCFF710SZC/@@download/ENCFF710SZC.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF882SPG bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF121DUE, ENCFF187ZET 5572049 ENCODE Processing Pipeline 8ed5f312510237898a4738a68929e967 https://www.encodeproject.org/files/ENCFF882SPG/@@download/ENCFF882SPG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF710ZCP bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF198RTF, ENCFF332SVJ 5432172 ENCODE Processing Pipeline 9e5955d134101cef2ce371de4277f59c https://www.encodeproject.org/files/ENCFF710ZCP/@@download/ENCFF710ZCP.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF136HBK bigBed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF710ZCP 11210590 ENCODE Processing Pipeline 79bdd23ac5c06a489495e0a1fa39449a https://www.encodeproject.org/files/ENCFF136HBK/@@download/ENCFF136HBK.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF798UGB bigBed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF789EHD 11590772 ENCODE Processing Pipeline 5a83db92a091c25359e3be228c7ebbae https://www.encodeproject.org/files/ENCFF798UGB/@@download/ENCFF798UGB.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF789EHD bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF121DUE, ENCFF187ZET, ENCFF198RTF, ENCFF332SVJ 6486284 ENCODE Processing Pipeline df9a0a4c79bf348e5f98e0e651103fa7 https://www.encodeproject.org/files/ENCFF789EHD/@@download/ENCFF789EHD.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF370EVX bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF312XHI 912088 ENCODE Processing Pipeline 5de7fd6ee5fe01ad253d7f2f1cb43dba https://www.encodeproject.org/files/ENCFF370EVX/@@download/ENCFF370EVX.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF145JGI bed narrowPeak conservative idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF710ZCP, ENCFF789EHD, ENCFF882SPG 443904 ENCODE Processing Pipeline 410cab9475562ecb0983a3868f1dbe82 https://www.encodeproject.org/files/ENCFF145JGI/@@download/ENCFF145JGI.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF804SVP bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF145JGI 847483 ENCODE Processing Pipeline 3a8da997a24413d67093ad5893d0e3d8 https://www.encodeproject.org/files/ENCFF804SVP/@@download/ENCFF804SVP.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF312XHI bed narrowPeak optimal idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF710ZCP, ENCFF789EHD, ENCFF882SPG 496400 ENCODE Processing Pipeline e9f3b1cbd2dddf9944661d8825db571a https://www.encodeproject.org/files/ENCFF312XHI/@@download/ENCFF312XHI.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF665SBO bam unfiltered alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUJ, ENCFF807MUK 1422918713 ENCODE Processing Pipeline dbdba334bdecee65575eaa7319c5b622 https://www.encodeproject.org/files/ENCFF665SBO/@@download/ENCFF665SBO.bam hg19 released low read depth, antibody characterized with exemption ENCFF623HFK bam unfiltered alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUN, ENCFF807MUK 1913456268 ENCODE Processing Pipeline 565e56d079158a06a9a01335eb2df338 https://www.encodeproject.org/files/ENCFF623HFK/@@download/ENCFF623HFK.bam hg19 released low read depth, antibody characterized with exemption ENCFF727QOD bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUJ, ENCFF807MUK 1066478509 ENCODE Processing Pipeline 8861d827b4a30e606583ca8c7b9c05ed https://www.encodeproject.org/files/ENCFF727QOD/@@download/ENCFF727QOD.bam hg19 released low read depth, antibody characterized with exemption ENCFF103CZU bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUN, ENCFF807MUK 1443391674 ENCODE Processing Pipeline c74c7ca7e3c86fce1221bad9bf2922f4 https://www.encodeproject.org/files/ENCFF103CZU/@@download/ENCFF103CZU.bam hg19 released low read depth, antibody characterized with exemption ENCFF813HVG bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF103CZU, ENCFF578ISP, ENCFF727QOD 6490731 ENCODE Processing Pipeline 45b800c16bc87fd82dee37aacac4f078 https://www.encodeproject.org/files/ENCFF813HVG/@@download/ENCFF813HVG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF590LFF bigBed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF803FZY 11382659 ENCODE Processing Pipeline 910174e2600d8985b716d6b4f3caf6a0 https://www.encodeproject.org/files/ENCFF590LFF/@@download/ENCFF590LFF.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF446XRT bigBed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF813HVG 11582910 ENCODE Processing Pipeline ecc8d08b7fc04d22edcdf5a532696396 https://www.encodeproject.org/files/ENCFF446XRT/@@download/ENCFF446XRT.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF600LLW bigBed narrowPeak conservative idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF496KKT 845515 ENCODE Processing Pipeline c94bc4133f883886eaf3c3a120aebcf7 https://www.encodeproject.org/files/ENCFF600LLW/@@download/ENCFF600LLW.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF772OYF bigBed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF552ZAY 11205338 ENCODE Processing Pipeline 9a0033761843cbdc1e8f6fe34115f2c6 https://www.encodeproject.org/files/ENCFF772OYF/@@download/ENCFF772OYF.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF496KKT bed narrowPeak conservative idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF552ZAY, ENCFF803FZY, ENCFF813HVG 442923 ENCODE Processing Pipeline 0dec633c4a828f77ca7f75e4fbef4747 https://www.encodeproject.org/files/ENCFF496KKT/@@download/ENCFF496KKT.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF803FZY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF103CZU, ENCFF578ISP 5583357 ENCODE Processing Pipeline b465b7c2b84f5f8fb8b676d502b35b66 https://www.encodeproject.org/files/ENCFF803FZY/@@download/ENCFF803FZY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF552ZAY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF727QOD 5439753 ENCODE Processing Pipeline cd17067a85d52f2050be5d06ce0f6a33 https://www.encodeproject.org/files/ENCFF552ZAY/@@download/ENCFF552ZAY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF495MHZ bed narrowPeak optimal idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF552ZAY, ENCFF803FZY, ENCFF813HVG 486318 ENCODE Processing Pipeline 7a79922b588af54d6245ba1711aac16f https://www.encodeproject.org/files/ENCFF495MHZ/@@download/ENCFF495MHZ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF013MKU bigBed narrowPeak optimal idr thresholded peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF495MHZ 903726 ENCODE Processing Pipeline 6a224d4da4b9339ae202c0da4da7d9c0 https://www.encodeproject.org/files/ENCFF013MKU/@@download/ENCFF013MKU.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF773PJF bam unfiltered alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 50 ENCFF251YFI, ENCFF807MUK 1055112741 ENCODE Processing Pipeline 16c1e26b5401dc1f6a16dec0edacb072 https://www.encodeproject.org/files/ENCFF773PJF/@@download/ENCFF773PJF.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF310JOS bam unfiltered alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 50 ENCFF471BMT, ENCFF718QVM, ENCFF807MUK 1965412569 ENCODE Processing Pipeline 2f6e5a4fd9cdd84b044dee5a4e7bc94e https://www.encodeproject.org/files/ENCFF310JOS/@@download/ENCFF310JOS.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF251YFI fastq reads ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 987341980 Kevin White, UChicago 37538a4231db9d11f67601e1a32933b6 SRA:SRR6212989 https://www.encodeproject.org/files/ENCFF251YFI/@@download/ENCFF251YFI.fastq.gz Illumina HiSeq 2500 /files/ENCFF278ATS/ released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF718QVM fastq reads ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 778985459 Kevin White, UChicago 601086199611096b6fb057fbc9c20a05 SRA:SRR6212987 https://www.encodeproject.org/files/ENCFF718QVM/@@download/ENCFF718QVM.fastq.gz Illumina HiSeq 2500 /files/ENCFF278ATS/ released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF471BMT fastq reads ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1069901221 Kevin White, UChicago 7dc0ffce8a56bbb62d1e84b5b50b55b9 SRA:SRR6212988 https://www.encodeproject.org/files/ENCFF471BMT/@@download/ENCFF471BMT.fastq.gz Illumina HiSeq 2500 /files/ENCFF278ATS/ released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF306XER bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 50 ENCFF251YFI, ENCFF807MUK 806395489 ENCODE Processing Pipeline 9e82ebf237d5944758c27905cc96f527 https://www.encodeproject.org/files/ENCFF306XER/@@download/ENCFF306XER.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF054RVU bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 50 ENCFF471BMT, ENCFF718QVM, ENCFF807MUK 1433880391 ENCODE Processing Pipeline bb85e933ff96e6f2f6ad7ac1fcfbc13f https://www.encodeproject.org/files/ENCFF054RVU/@@download/ENCFF054RVU.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF888YDZ bigWig signal p-value ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF054RVU, ENCFF285NOA 633269880 ENCODE Processing Pipeline 194d286d5abed72ec4929efd2ae4452d https://www.encodeproject.org/files/ENCFF888YDZ/@@download/ENCFF888YDZ.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF506OVR bigWig signal p-value ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF285NOA, ENCFF306XER 556562132 ENCODE Processing Pipeline 5cd305b74e77fd1f8bdf085c28dcccc6 https://www.encodeproject.org/files/ENCFF506OVR/@@download/ENCFF506OVR.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF680LIE bigWig signal p-value ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF054RVU, ENCFF285NOA, ENCFF306XER 618233614 ENCODE Processing Pipeline 21a13d65e7c6d57fca8f79ea8d36a34e https://www.encodeproject.org/files/ENCFF680LIE/@@download/ENCFF680LIE.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF930RJR bigWig fold change over control ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF285NOA, ENCFF306XER 434107325 ENCODE Processing Pipeline 0210ac90e22c91f75345badcd2ae7a72 https://www.encodeproject.org/files/ENCFF930RJR/@@download/ENCFF930RJR.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF436QYG bigWig fold change over control ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF054RVU, ENCFF285NOA 639281218 ENCODE Processing Pipeline 762495151065e60bb888cdf3d46f2962 https://www.encodeproject.org/files/ENCFF436QYG/@@download/ENCFF436QYG.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF433QCW bigWig fold change over control ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF054RVU, ENCFF285NOA, ENCFF306XER 862566721 ENCODE Processing Pipeline 7f69763535a33ca3200ea6063624dfe7 https://www.encodeproject.org/files/ENCFF433QCW/@@download/ENCFF433QCW.bigWig hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF392CTG bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF054RVU, ENCFF285NOA 6823970 ENCODE Processing Pipeline 75c3cf7db837a69224afe8ae47622624 https://www.encodeproject.org/files/ENCFF392CTG/@@download/ENCFF392CTG.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF254TMJ bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF285NOA, ENCFF306XER 6085191 ENCODE Processing Pipeline 2094ae886ce87c6e14bc9cd5117889d4 https://www.encodeproject.org/files/ENCFF254TMJ/@@download/ENCFF254TMJ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF609KYL bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF054RVU, ENCFF285NOA, ENCFF306XER 7111238 ENCODE Processing Pipeline 6b367b80b7e5ad6ca9d8bab9b15f37a9 https://www.encodeproject.org/files/ENCFF609KYL/@@download/ENCFF609KYL.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF239VNX bigBed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF609KYL 12969755 ENCODE Processing Pipeline 6fa08f4bf5e986b89d6258ac772428d6 https://www.encodeproject.org/files/ENCFF239VNX/@@download/ENCFF239VNX.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF024MZT bigBed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF254TMJ 13027743 ENCODE Processing Pipeline 47163244ca54ef2feb6ef449bdf81cae https://www.encodeproject.org/files/ENCFF024MZT/@@download/ENCFF024MZT.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF470ZQS bigBed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF392CTG 12905818 ENCODE Processing Pipeline ee6607e5cfc0fc15629190b25bf59a32 https://www.encodeproject.org/files/ENCFF470ZQS/@@download/ENCFF470ZQS.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF223GIE bam unfiltered alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 50 ENCFF251YFI, ENCFF643CGH 1059093189 ENCODE Processing Pipeline b53ee11456e23ac9c2de4d5bf07685be https://www.encodeproject.org/files/ENCFF223GIE/@@download/ENCFF223GIE.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF768ZIJ bam unfiltered alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 50 ENCFF471BMT, ENCFF643CGH, ENCFF718QVM 1972421674 ENCODE Processing Pipeline c17bda7a9ebf64081ed431f7bd28fcc6 https://www.encodeproject.org/files/ENCFF768ZIJ/@@download/ENCFF768ZIJ.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF690YWW bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 50 ENCFF251YFI, ENCFF643CGH 805892387 ENCODE Processing Pipeline 470483e22f92c6455252fb4238cf48c6 https://www.encodeproject.org/files/ENCFF690YWW/@@download/ENCFF690YWW.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF180ZQP bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 50 ENCFF471BMT, ENCFF643CGH, ENCFF718QVM 1433047478 ENCODE Processing Pipeline e073eb1b6460a8cb31b1d3e8b779cda8 https://www.encodeproject.org/files/ENCFF180ZQP/@@download/ENCFF180ZQP.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF862DOC bigWig signal p-value ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF180ZQP, ENCFF568OMP 638385534 ENCODE Processing Pipeline 55f41c24cfec71140dcd2d03e118cd08 https://www.encodeproject.org/files/ENCFF862DOC/@@download/ENCFF862DOC.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF168MKV bigWig signal p-value ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF568OMP, ENCFF690YWW 427985982 ENCODE Processing Pipeline 1f1697376d498dd2c0fc47f49adb4f02 https://www.encodeproject.org/files/ENCFF168MKV/@@download/ENCFF168MKV.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF361MFE bigWig fold change over control ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF180ZQP, ENCFF568OMP 645328038 ENCODE Processing Pipeline 8419f31d16b7d34dab521bd9742da9c0 https://www.encodeproject.org/files/ENCFF361MFE/@@download/ENCFF361MFE.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF704QLJ bigWig signal p-value ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF180ZQP, ENCFF568OMP, ENCFF690YWW 621080231 ENCODE Processing Pipeline 22cd2cfc568833fa2d60456e57797320 https://www.encodeproject.org/files/ENCFF704QLJ/@@download/ENCFF704QLJ.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF699LOC bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF568OMP, ENCFF690YWW 5933518 ENCODE Processing Pipeline af2385cfd878b9af258ba8da04225c2f https://www.encodeproject.org/files/ENCFF699LOC/@@download/ENCFF699LOC.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF517BHV bigBed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF582YXT 12915637 ENCODE Processing Pipeline 553b18e0846463f414044e1186c1e767 https://www.encodeproject.org/files/ENCFF517BHV/@@download/ENCFF517BHV.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF178LET bigWig fold change over control ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF568OMP, ENCFF690YWW 442829683 ENCODE Processing Pipeline 6d03dee32b2b12a3a0feed49448d95e8 https://www.encodeproject.org/files/ENCFF178LET/@@download/ENCFF178LET.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF735BNC bigWig fold change over control ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF180ZQP, ENCFF568OMP, ENCFF690YWW 861831367 ENCODE Processing Pipeline d2acf596b3b53545e41c5a4fdf1ea6df https://www.encodeproject.org/files/ENCFF735BNC/@@download/ENCFF735BNC.bigWig GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF344KDO bigBed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF699LOC 13020215 ENCODE Processing Pipeline 41e0f0600c7121f3da2f7720cd7e813b https://www.encodeproject.org/files/ENCFF344KDO/@@download/ENCFF344KDO.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF795RXR bigBed narrowPeak optimal idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF791JWI 556142 ENCODE Processing Pipeline efe67bd04f255c09cfa13a1abce17b5e https://www.encodeproject.org/files/ENCFF795RXR/@@download/ENCFF795RXR.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF992JUC bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF180ZQP, ENCFF568OMP, ENCFF690YWW 6990183 ENCODE Processing Pipeline 920787dc67c53e37815dd3e165a66a80 https://www.encodeproject.org/files/ENCFF992JUC/@@download/ENCFF992JUC.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF582YXT bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF180ZQP, ENCFF568OMP 6669571 ENCODE Processing Pipeline fa2e93ec3cf8dcc80f5494adf35d174c https://www.encodeproject.org/files/ENCFF582YXT/@@download/ENCFF582YXT.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF389MXB bigBed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF992JUC 12974620 ENCODE Processing Pipeline 9b4251ce591387b2891256e8e44320ca https://www.encodeproject.org/files/ENCFF389MXB/@@download/ENCFF389MXB.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF675TCT bed narrowPeak conservative idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF582YXT, ENCFF699LOC, ENCFF992JUC 190968 ENCODE Processing Pipeline 59d9c3727b85b95b6df2df0b0aa865e2 https://www.encodeproject.org/files/ENCFF675TCT/@@download/ENCFF675TCT.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF015KFR bigBed narrowPeak conservative idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF675TCT 494373 ENCODE Processing Pipeline bc9828173fe759b0f44e6db5cc2f3e76 https://www.encodeproject.org/files/ENCFF015KFR/@@download/ENCFF015KFR.bigBed GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF791JWI bed narrowPeak optimal idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF582YXT, ENCFF699LOC, ENCFF992JUC 223942 ENCODE Processing Pipeline b561c235f2f24be86a30be2d0cd4b3eb https://www.encodeproject.org/files/ENCFF791JWI/@@download/ENCFF791JWI.bed.gz GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF143SUE bigBed narrowPeak conservative idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF755MMS 299635 ENCODE Processing Pipeline 65b174a363279287a897e10a2bc3e7f1 https://www.encodeproject.org/files/ENCFF143SUE/@@download/ENCFF143SUE.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF755MMS bed narrowPeak conservative idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF254TMJ, ENCFF392CTG, ENCFF609KYL 151974 ENCODE Processing Pipeline 1b104cb0e83786c9e20c34ab5fa36631 https://www.encodeproject.org/files/ENCFF755MMS/@@download/ENCFF755MMS.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF654BMD bed narrowPeak optimal idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF254TMJ, ENCFF392CTG, ENCFF609KYL 174216 ENCODE Processing Pipeline 23427149d84edb0eff7ef3d6750b8089 https://www.encodeproject.org/files/ENCFF654BMD/@@download/ENCFF654BMD.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF180MZG bigBed narrowPeak optimal idr thresholded peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF654BMD 401222 ENCODE Processing Pipeline 39a19c020f42f2cc5e7d6f1b62f19410 https://www.encodeproject.org/files/ENCFF180MZG/@@download/ENCFF180MZG.bigBed hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF000OWF bigBed broadPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UDC 829287 Richard Myers, HAIB d7c1f62030d05ea26428034c1fc90342 https://www.encodeproject.org/files/ENCFF000OWF/@@download/ENCFF000OWF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OWG bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OWS 1020143301 Richard Myers, HAIB b4ca287396605cfaac01f9e5b5df4166 https://www.encodeproject.org/files/ENCFF000OWG/@@download/ENCFF000OWG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OWH bigBed broadPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UDD 635413 Richard Myers, HAIB 729cd361e9710221bfdb4ec0bf4aa2b2 https://www.encodeproject.org/files/ENCFF000OWH/@@download/ENCFF000OWH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OWI bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OWO 501628262 Richard Myers, HAIB d3adec98052379741dff3e89b2803599 https://www.encodeproject.org/files/ENCFF000OWI/@@download/ENCFF000OWI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OWJ bigWig raw signal ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 25980156 Richard Myers, HAIB d958a8dc62dd1e13ad9a849effe1c45a https://www.encodeproject.org/files/ENCFF000OWJ/@@download/ENCFF000OWJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OWK bigWig raw signal ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 12245361 Richard Myers, HAIB 7247664faccd8ed7895bc234716272e3 https://www.encodeproject.org/files/ENCFF000OWK/@@download/ENCFF000OWK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OWO fastq reads ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 398762603 Richard Myers, HAIB 282939210c0bdd3d05dafdec94c10c52 https://www.encodeproject.org/files/ENCFF000OWO/@@download/ENCFF000OWO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OWS fastq reads ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 931834586 Richard Myers, HAIB a7ac06b1faa3a866b6e2b2aa529a3f8b https://www.encodeproject.org/files/ENCFF000OWS/@@download/ENCFF000OWS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001UDC bed broadPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 483555 Richard Myers, HAIB 6cdb7ce2745808a83f385e8f6cc840c7 https://www.encodeproject.org/files/ENCFF001UDC/@@download/ENCFF001UDC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UDD bed broadPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 372628 Richard Myers, HAIB dfe0018cf644093a2d912b0d3bf93b23 https://www.encodeproject.org/files/ENCFF001UDD/@@download/ENCFF001UDD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJT bed narrowPeak optimal idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 360295 ENCODE Consortium Analysis Working Group 4b11a8fb4cb32982db9903bb88c63fd5 https://www.encodeproject.org/files/ENCFF002CJT/@@download/ENCFF002CJT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF942HWY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJT 704764 ENCODE Consortium 7c3ace74466528ef4ea591c64812dc55 https://www.encodeproject.org/files/ENCFF942HWY/@@download/ENCFF942HWY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF972SQO bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWO, ENCFF643CGH 350529840 ENCODE Processing Pipeline f85f3cdc35482e6e53d5d25d074cc1ad https://www.encodeproject.org/files/ENCFF972SQO/@@download/ENCFF972SQO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF770GTP bam unfiltered alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWO, ENCFF643CGH 582693437 ENCODE Processing Pipeline 66727e09d5a928ed84ae0b6f93716d47 https://www.encodeproject.org/files/ENCFF770GTP/@@download/ENCFF770GTP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF184GCE bam unfiltered alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWS, ENCFF643CGH 1282914486 ENCODE Processing Pipeline aed37ad508deb29088415251ef06a1d0 https://www.encodeproject.org/files/ENCFF184GCE/@@download/ENCFF184GCE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF489EBO bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWS, ENCFF643CGH 770713385 ENCODE Processing Pipeline e6587ac13aa2670108dccd41c1bf49d9 https://www.encodeproject.org/files/ENCFF489EBO/@@download/ENCFF489EBO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF426NNP bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWO, ENCFF807MUK 350839452 ENCODE Processing Pipeline bc797ddb2afbf4c25b14701f0559339e https://www.encodeproject.org/files/ENCFF426NNP/@@download/ENCFF426NNP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF255KGJ bam unfiltered alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWO, ENCFF807MUK 581104585 ENCODE Processing Pipeline 1e3e335dddd0d8c321d5cf55dc0ab7fe https://www.encodeproject.org/files/ENCFF255KGJ/@@download/ENCFF255KGJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF248KXX bam unfiltered alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWS, ENCFF807MUK 1278832416 ENCODE Processing Pipeline 343e20451b2ad84f7467e1c3bcdd612c https://www.encodeproject.org/files/ENCFF248KXX/@@download/ENCFF248KXX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF454STL bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWS, ENCFF807MUK 771152448 ENCODE Processing Pipeline 29c2e61b664d9712c9711789e7aca064 https://www.encodeproject.org/files/ENCFF454STL/@@download/ENCFF454STL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF371JOS bigWig signal p-value ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF489EBO, ENCFF948LKH, ENCFF972SQO 553631265 ENCODE Processing Pipeline a19c2da8b3d8ad41f43c5ce5cbaa7a01 https://www.encodeproject.org/files/ENCFF371JOS/@@download/ENCFF371JOS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF609AFO bigWig signal p-value ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF489EBO, ENCFF948LKH 596581585 ENCODE Processing Pipeline ec3087cc3385ff21d93c74fc8fdc1972 https://www.encodeproject.org/files/ENCFF609AFO/@@download/ENCFF609AFO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF043CXM bigWig signal p-value ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF948LKH, ENCFF972SQO 380540801 ENCODE Processing Pipeline 2a8385af6fc82fe45ea15b6c2ee832d2 https://www.encodeproject.org/files/ENCFF043CXM/@@download/ENCFF043CXM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF515UYM bigWig fold change over control ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF489EBO, ENCFF948LKH 423163579 ENCODE Processing Pipeline 5cb8b62679ca37f0f9f5a7650f15a443 https://www.encodeproject.org/files/ENCFF515UYM/@@download/ENCFF515UYM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF170XRZ bigWig fold change over control ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF948LKH, ENCFF972SQO 241567235 ENCODE Processing Pipeline ff043ca720711644e15cb0fbc805af51 https://www.encodeproject.org/files/ENCFF170XRZ/@@download/ENCFF170XRZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF851XYO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF183HLJ 672544 ENCODE Processing Pipeline 44e53c5d97ff039e367d52c3d063251b https://www.encodeproject.org/files/ENCFF851XYO/@@download/ENCFF851XYO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF509GYP bed narrowPeak optimal idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF150MFX, ENCFF419RSJ, ENCFF551XHS, ENCFF683FDT 425257 ENCODE Processing Pipeline 60a16f0e4b44bad618dd6a05511bde2d https://www.encodeproject.org/files/ENCFF509GYP/@@download/ENCFF509GYP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF683FDT bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF948LKH, ENCFF972SQO 5167712 ENCODE Processing Pipeline afc598864ba5ffca0f5076adb4a7b0dc https://www.encodeproject.org/files/ENCFF683FDT/@@download/ENCFF683FDT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF722XPG bigBed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF551XHS 13571948 ENCODE Processing Pipeline 3ff5ad1d7d8311f937b123eba54ed040 https://www.encodeproject.org/files/ENCFF722XPG/@@download/ENCFF722XPG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF183HLJ bed narrowPeak conservative idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF150MFX, ENCFF419RSJ, ENCFF551XHS, ENCFF683FDT 350613 ENCODE Processing Pipeline 12d520114e5adaff8c6181509d7c0e0c https://www.encodeproject.org/files/ENCFF183HLJ/@@download/ENCFF183HLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF406PYH bigWig fold change over control ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF489EBO, ENCFF948LKH, ENCFF972SQO 577205328 ENCODE Processing Pipeline efaa1b6af3efd5c97ee6ec687621772b https://www.encodeproject.org/files/ENCFF406PYH/@@download/ENCFF406PYH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF150MFX bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF489EBO, ENCFF948LKH 5395128 ENCODE Processing Pipeline 96dc6bbd3466f8c3b6108bd82fffc829 https://www.encodeproject.org/files/ENCFF150MFX/@@download/ENCFF150MFX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF551XHS bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF489EBO, ENCFF948LKH, ENCFF972SQO 6128528 ENCODE Processing Pipeline 2ce08eeda1d191be27f7fa192e2f18c5 https://www.encodeproject.org/files/ENCFF551XHS/@@download/ENCFF551XHS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF773JAW bigBed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF683FDT 10763975 ENCODE Processing Pipeline 09669d80b4e3be3857d6d390447dde8d https://www.encodeproject.org/files/ENCFF773JAW/@@download/ENCFF773JAW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF692LLO bigBed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF150MFX 11335578 ENCODE Processing Pipeline ad489377a2c153f0ed7fb4dcf5a16dd3 https://www.encodeproject.org/files/ENCFF692LLO/@@download/ENCFF692LLO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF397GOK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF509GYP 776347 ENCODE Processing Pipeline 6a9348e0bab66e830878cf9dbc9f3a89 https://www.encodeproject.org/files/ENCFF397GOK/@@download/ENCFF397GOK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF170RCN bigWig signal p-value ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF454STL 590999062 ENCODE Processing Pipeline 7ada25d0e443bf994b0bc6f03990a91d https://www.encodeproject.org/files/ENCFF170RCN/@@download/ENCFF170RCN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF319BAS bigWig signal p-value ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF426NNP 426735137 ENCODE Processing Pipeline 0b96cd0924f88038cfb8e07796fabfec https://www.encodeproject.org/files/ENCFF319BAS/@@download/ENCFF319BAS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF921YQK bigWig fold change over control ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF454STL 423828339 ENCODE Processing Pipeline f126cc954d12b00e4e087b2b8f4048cb https://www.encodeproject.org/files/ENCFF921YQK/@@download/ENCFF921YQK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF602VCI bigWig signal p-value ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF426NNP, ENCFF454STL 553853635 ENCODE Processing Pipeline a0e764289ef177dad299fcbb8715ab75 https://www.encodeproject.org/files/ENCFF602VCI/@@download/ENCFF602VCI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF122RUW bigWig fold change over control ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF426NNP 241289942 ENCODE Processing Pipeline 8d0d12b569eb1f32df546fa02aa3b024 https://www.encodeproject.org/files/ENCFF122RUW/@@download/ENCFF122RUW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF535RGW bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF454STL 5341872 ENCODE Processing Pipeline bf292408039660e5ac574d732e4902ee https://www.encodeproject.org/files/ENCFF535RGW/@@download/ENCFF535RGW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF053TTQ bigBed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF535RGW 11265383 ENCODE Processing Pipeline 3f3d8c9b9fd4aaa651f65c59b1b4918f https://www.encodeproject.org/files/ENCFF053TTQ/@@download/ENCFF053TTQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF484OSG bigWig fold change over control ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF426NNP, ENCFF454STL 579879541 ENCODE Processing Pipeline 9b64dfe3447fdec02d73dd6ec94ecb36 https://www.encodeproject.org/files/ENCFF484OSG/@@download/ENCFF484OSG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF654AYS bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF426NNP 5190525 ENCODE Processing Pipeline 22b797f93b9ba6e5c6e378848d333642 https://www.encodeproject.org/files/ENCFF654AYS/@@download/ENCFF654AYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF052MDZ bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF426NNP, ENCFF454STL 6093207 ENCODE Processing Pipeline 71b3fe5c5da2f07c683bbc662dc74334 https://www.encodeproject.org/files/ENCFF052MDZ/@@download/ENCFF052MDZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF686VJY bed narrowPeak optimal idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF052MDZ, ENCFF535RGW, ENCFF654AYS 425021 ENCODE Processing Pipeline 528631c3a11fa1a1f12c9340d582e94c https://www.encodeproject.org/files/ENCFF686VJY/@@download/ENCFF686VJY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF976TDK bigBed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF052MDZ 13541054 ENCODE Processing Pipeline c7b1c8c4eb8e57b7be25e57954efd690 https://www.encodeproject.org/files/ENCFF976TDK/@@download/ENCFF976TDK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF369MLU bigBed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF654AYS 10788047 ENCODE Processing Pipeline d52bdc11533d66e09f5cefe8264d61ea https://www.encodeproject.org/files/ENCFF369MLU/@@download/ENCFF369MLU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF724MKH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF686VJY 774346 ENCODE Processing Pipeline 547011da72018f4bd27147ff7b6cfe57 https://www.encodeproject.org/files/ENCFF724MKH/@@download/ENCFF724MKH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF979BJT bed narrowPeak conservative idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF052MDZ, ENCFF535RGW, ENCFF654AYS 347636 ENCODE Processing Pipeline e21eb9a186e55cc449abd636869a33a9 https://www.encodeproject.org/files/ENCFF979BJT/@@download/ENCFF979BJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF788MMJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF979BJT 665896 ENCODE Processing Pipeline dc68a8b4a18c0cafe5d633421d5dd1b4 https://www.encodeproject.org/files/ENCFF788MMJ/@@download/ENCFF788MMJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000WUH fastq reads ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 226454530 Peggy Farnham, USC 2da759d4171fe362c8425942060eadd3 https://www.encodeproject.org/files/ENCFF000WUH/@@download/ENCFF000WUH.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000WTX bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGY 1889846 Peggy Farnham, USC 1b3c847d459247962bc2e642a5ff2833 https://www.encodeproject.org/files/ENCFF000WTX/@@download/ENCFF000WTX.bigBed hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000WTY bigWig signal ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 305560989 Peggy Farnham, USC 2ca34a5a187c897130f8f36f76d08a60 https://www.encodeproject.org/files/ENCFF000WTY/@@download/ENCFF000WTY.bigWig hg19 released borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000WUJ fastq reads ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 262253678 Peggy Farnham, USC e08a11619eb18d60db53ba5e2d7876a7 https://www.encodeproject.org/files/ENCFF000WUJ/@@download/ENCFF000WUJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read length extremely low read depth ENCFF001VGY bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 824480 Peggy Farnham, USC a155b26a7e96d40df241677fe149bf22 https://www.encodeproject.org/files/ENCFF001VGY/@@download/ENCFF001VGY.bed.gz hg19 archived borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF002CRA bed narrowPeak optimal idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 233658 ENCODE Consortium Analysis Working Group 4202c09bf17472b546e9289570a6f946 https://www.encodeproject.org/files/ENCFF002CRA/@@download/ENCFF002CRA.bed.gz hg19 archived borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF806MKD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRA 477556 ENCODE Consortium 5f792d5add23c9d061be793e0cc93a99 https://www.encodeproject.org/files/ENCFF806MKD/@@download/ENCFF806MKD.bigBed hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000WTU bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WUJ 211648316 Michael Snyder, Stanford d714ace008dfe50421a247f0efadc308 https://www.encodeproject.org/files/ENCFF000WTU/@@download/ENCFF000WTU.bam hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000WTW bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WUH 187773911 Michael Snyder, Stanford 800df19d72bf139892d120666c86e472 https://www.encodeproject.org/files/ENCFF000WTW/@@download/ENCFF000WTW.bam hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF855ERJ bam unfiltered alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 34 ENCFF000WUJ, ENCFF643CGH 323628408 ENCODE Processing Pipeline 63617c13f60d7daaa6434295a17cbb51 https://www.encodeproject.org/files/ENCFF855ERJ/@@download/ENCFF855ERJ.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF764OCO bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 34 ENCFF000WUJ, ENCFF807MUK 215045748 ENCODE Processing Pipeline f0fad1a6fcea821dedc832876dafe1c4 https://www.encodeproject.org/files/ENCFF764OCO/@@download/ENCFF764OCO.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF676ZPL bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 34 ENCFF000WUH, ENCFF643CGH 185921131 ENCODE Processing Pipeline c8a09c4350d34f253dd4fec119fa47d0 https://www.encodeproject.org/files/ENCFF676ZPL/@@download/ENCFF676ZPL.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF481XFG bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 34 ENCFF000WUH, ENCFF807MUK 186060623 ENCODE Processing Pipeline 9e41a856c83022188560555f8f40d309 https://www.encodeproject.org/files/ENCFF481XFG/@@download/ENCFF481XFG.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF853IGP bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 34 ENCFF000WUJ, ENCFF643CGH 214856369 ENCODE Processing Pipeline 4c555a242281f30fc61309746f0d7f44 https://www.encodeproject.org/files/ENCFF853IGP/@@download/ENCFF853IGP.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF610ALI bam unfiltered alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 34 ENCFF000WUJ, ENCFF807MUK 322761949 ENCODE Processing Pipeline 05931ff83b1c40d1d5ab9433fc08062b https://www.encodeproject.org/files/ENCFF610ALI/@@download/ENCFF610ALI.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF481CGM bam unfiltered alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 34 ENCFF000WUH, ENCFF643CGH 281728006 ENCODE Processing Pipeline 59e679ee64d08c2e8aadefdc913a3a0b https://www.encodeproject.org/files/ENCFF481CGM/@@download/ENCFF481CGM.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF557DJG bam unfiltered alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 34 ENCFF000WUH, ENCFF807MUK 280854494 ENCODE Processing Pipeline 7f8519cd7d7468f487f7361883811d64 https://www.encodeproject.org/files/ENCFF557DJG/@@download/ENCFF557DJG.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF379FDF bigWig signal p-value ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF481XFG, ENCFF509ANO 340582279 ENCODE Processing Pipeline 791d485bda93aa185721ce8198844b0f https://www.encodeproject.org/files/ENCFF379FDF/@@download/ENCFF379FDF.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF217POT bigWig signal p-value ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF676ZPL 340070639 ENCODE Processing Pipeline 962ca41a7cef2a294e3c582d0b968b96 https://www.encodeproject.org/files/ENCFF217POT/@@download/ENCFF217POT.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF757VYL bigWig fold change over control ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF676ZPL 106473467 ENCODE Processing Pipeline 8b160590d3ed3be5edffa688b7e08d38 https://www.encodeproject.org/files/ENCFF757VYL/@@download/ENCFF757VYL.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF161CIF bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF676ZPL 1394652 ENCODE Processing Pipeline b378d36260f910ae7bdb7f7b3dea615f https://www.encodeproject.org/files/ENCFF161CIF/@@download/ENCFF161CIF.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF255KBW bigWig fold change over control ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF481XFG, ENCFF509ANO, ENCFF764OCO 203933568 ENCODE Processing Pipeline 8ba6e20eadc557f255b710f453b882e2 https://www.encodeproject.org/files/ENCFF255KBW/@@download/ENCFF255KBW.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF812UDQ bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF566JIH 9263492 ENCODE Processing Pipeline 3892057fd6368b34f4f0b899d7d5ea81 https://www.encodeproject.org/files/ENCFF812UDQ/@@download/ENCFF812UDQ.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF668VNS bed narrowPeak optimal idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF056RFC, ENCFF566JIH, ENCFF667ZFL 94566 ENCODE Processing Pipeline d5e88944c656337613f322a78d3b9172 https://www.encodeproject.org/files/ENCFF668VNS/@@download/ENCFF668VNS.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF597PYD bigWig fold change over control ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF509ANO, ENCFF764OCO 124968516 ENCODE Processing Pipeline f3dd305df82225015d36fdd476d171e6 https://www.encodeproject.org/files/ENCFF597PYD/@@download/ENCFF597PYD.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF948DAR bigWig signal p-value ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF559ZZZ, ENCFF853IGP 394364949 ENCODE Processing Pipeline 89cb78799e8449e54da384c7a31fe572 https://www.encodeproject.org/files/ENCFF948DAR/@@download/ENCFF948DAR.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF187CML bigWig signal p-value ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF559ZZZ, ENCFF676ZPL, ENCFF853IGP 382900091 ENCODE Processing Pipeline 7e84f1d667eba159eaddaf3fd2ef20d9 https://www.encodeproject.org/files/ENCFF187CML/@@download/ENCFF187CML.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF428TKY bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF161CIF 2989118 ENCODE Processing Pipeline c9a28b00d3ce120a1d3f85a6b1b229d5 https://www.encodeproject.org/files/ENCFF428TKY/@@download/ENCFF428TKY.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF947JUF bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF690RWG 9129653 ENCODE Processing Pipeline c0b1815f6998f127051cc7ed8a2f9afe https://www.encodeproject.org/files/ENCFF947JUF/@@download/ENCFF947JUF.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF731HPF bed narrowPeak conservative idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF161CIF, ENCFF197AYE, ENCFF419RSJ, ENCFF690RWG 81180 ENCODE Processing Pipeline 3cdb5febbf038c6f049be7cff934b5e5 https://www.encodeproject.org/files/ENCFF731HPF/@@download/ENCFF731HPF.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF762LKG bed narrowPeak optimal idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF161CIF, ENCFF197AYE, ENCFF419RSJ, ENCFF690RWG 94385 ENCODE Processing Pipeline f43f8ec35061a85fbc5fd880e790ead4 https://www.encodeproject.org/files/ENCFF762LKG/@@download/ENCFF762LKG.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF667ZFL bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF481XFG, ENCFF509ANO 1433441 ENCODE Processing Pipeline bcba2ec36ba11c4c1df173dd311fdc03 https://www.encodeproject.org/files/ENCFF667ZFL/@@download/ENCFF667ZFL.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF980YUQ bigWig signal p-value ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF509ANO, ENCFF764OCO 343027540 ENCODE Processing Pipeline 002b6583470f40922054826aa17aa4c0 https://www.encodeproject.org/files/ENCFF980YUQ/@@download/ENCFF980YUQ.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF564MLQ bigWig signal p-value ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF481XFG, ENCFF509ANO, ENCFF764OCO 367724798 ENCODE Processing Pipeline c055502ed6b9843c07d8dc4d53529926 https://www.encodeproject.org/files/ENCFF564MLQ/@@download/ENCFF564MLQ.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF353LIQ bigWig fold change over control ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF481XFG, ENCFF509ANO 106722027 ENCODE Processing Pipeline aaea884aff0ac7f41c78ff0d4819ce1f https://www.encodeproject.org/files/ENCFF353LIQ/@@download/ENCFF353LIQ.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF348HTN bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF056RFC 3728453 ENCODE Processing Pipeline 9f022540974b4d8b0931109985b30f61 https://www.encodeproject.org/files/ENCFF348HTN/@@download/ENCFF348HTN.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF548MEP bed narrowPeak conservative idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF056RFC, ENCFF566JIH, ENCFF667ZFL 81856 ENCODE Processing Pipeline 5846ecd0ea35834c2543737c8e81a3c5 https://www.encodeproject.org/files/ENCFF548MEP/@@download/ENCFF548MEP.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF268FDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF668VNS 210275 ENCODE Processing Pipeline aade37a7fdcc8a0e70e90ee77ababff6 https://www.encodeproject.org/files/ENCFF268FDZ/@@download/ENCFF268FDZ.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF857DHC bigWig fold change over control ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF559ZZZ, ENCFF853IGP 124497023 ENCODE Processing Pipeline 37344520598fa2803fcd5206f611d2b2 https://www.encodeproject.org/files/ENCFF857DHC/@@download/ENCFF857DHC.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF056RFC bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF509ANO, ENCFF764OCO 1850944 ENCODE Processing Pipeline 52d0d1e1ab5acb6750034d8802f87d99 https://www.encodeproject.org/files/ENCFF056RFC/@@download/ENCFF056RFC.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF566JIH bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF481XFG, ENCFF509ANO, ENCFF764OCO 4089591 ENCODE Processing Pipeline 86e43401447eb10d8020df06bce4100d https://www.encodeproject.org/files/ENCFF566JIH/@@download/ENCFF566JIH.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF710DAN bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF667ZFL 3045477 ENCODE Processing Pipeline 81750bb16bc8d5ffbe48e589cc039901 https://www.encodeproject.org/files/ENCFF710DAN/@@download/ENCFF710DAN.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF657ICR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548MEP 193464 ENCODE Processing Pipeline e662b220fea4303c2ee73b66864c7f90 https://www.encodeproject.org/files/ENCFF657ICR/@@download/ENCFF657ICR.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF690RWG bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF559ZZZ, ENCFF676ZPL, ENCFF853IGP 3976654 ENCODE Processing Pipeline 6c643783fa8d204d4ee00b7dbbf525d7 https://www.encodeproject.org/files/ENCFF690RWG/@@download/ENCFF690RWG.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF444FFZ bigWig fold change over control ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF559ZZZ, ENCFF676ZPL, ENCFF853IGP 209938111 ENCODE Processing Pipeline 0fe314c0b7921833cd88df0192618c4b https://www.encodeproject.org/files/ENCFF444FFZ/@@download/ENCFF444FFZ.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF237UHM bigBed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF197AYE 3691024 ENCODE Processing Pipeline 39321f58a21f41368f78a8234f66f2aa https://www.encodeproject.org/files/ENCFF237UHM/@@download/ENCFF237UHM.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF197AYE bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF559ZZZ, ENCFF853IGP 1823894 ENCODE Processing Pipeline da77273c18c367a43e8dcb3a0ffc9f1b https://www.encodeproject.org/files/ENCFF197AYE/@@download/ENCFF197AYE.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF888NTB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF762LKG 209802 ENCODE Processing Pipeline 4fd8c1e8781c71631e5db8064c6f8b66 https://www.encodeproject.org/files/ENCFF888NTB/@@download/ENCFF888NTB.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF351SJB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF731HPF 192071 ENCODE Processing Pipeline 8fb379fbcd8bf915aace60c4e1204d57 https://www.encodeproject.org/files/ENCFF351SJB/@@download/ENCFF351SJB.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF357QBO bam unfiltered alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF007LTF, ENCFF167VUS, ENCFF807MUK 3572831476 ENCODE Processing Pipeline aa2b7dcb48ec201c2d70e3399d938813 https://www.encodeproject.org/files/ENCFF357QBO/@@download/ENCFF357QBO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF720QXY bam unfiltered alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF749GVI, ENCFF807MUK, ENCFF888ZYM 5256260071 ENCODE Processing Pipeline df48145a37c7809e3d6e2581dbcc521d https://www.encodeproject.org/files/ENCFF720QXY/@@download/ENCFF720QXY.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF167VUS fastq reads ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF007LTF 1679824935 Michael Snyder, Stanford ef9fb2388cc56b76fd31c5d147d234a5 SRA:SRR6213232 https://www.encodeproject.org/files/ENCFF167VUS/@@download/ENCFF167VUS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF007LTF fastq reads ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF167VUS 1702967832 Michael Snyder, Stanford 2a345796ea504f230457a8cf1fe4b080 SRA:SRR6213232 https://www.encodeproject.org/files/ENCFF007LTF/@@download/ENCFF007LTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749GVI fastq reads ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF888ZYM 2586265020 Michael Snyder, Stanford d0b0f4b1bf2f3400a2de361a84bf7897 SRA:SRR6213233 https://www.encodeproject.org/files/ENCFF749GVI/@@download/ENCFF749GVI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF888ZYM fastq reads ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF749GVI 2501909292 Michael Snyder, Stanford 2517665f4c256cbb70cdf9f312fe4f09 SRA:SRR6213233 https://www.encodeproject.org/files/ENCFF888ZYM/@@download/ENCFF888ZYM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF866PHS bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF007LTF, ENCFF167VUS, ENCFF807MUK 2595980328 ENCODE Processing Pipeline 799a859df2feaff6aaa6d0683bdcf68a https://www.encodeproject.org/files/ENCFF866PHS/@@download/ENCFF866PHS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF350LLA bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF749GVI, ENCFF807MUK, ENCFF888ZYM 3335272985 ENCODE Processing Pipeline c7fc5797a90b189078834f96f7da93a4 https://www.encodeproject.org/files/ENCFF350LLA/@@download/ENCFF350LLA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF443CLI bigWig signal p-value ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF581ZJL, ENCFF866PHS 872947503 ENCODE Processing Pipeline dde90e9890a7747f5b1674461ed2bb4c https://www.encodeproject.org/files/ENCFF443CLI/@@download/ENCFF443CLI.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF068SKD bigWig signal p-value ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF350LLA 1034794886 ENCODE Processing Pipeline 1e91340274daabdcf33c9bb9b4ea2dc4 https://www.encodeproject.org/files/ENCFF068SKD/@@download/ENCFF068SKD.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF070JCK bigWig signal p-value ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF350LLA, ENCFF581ZJL, ENCFF866PHS 1824899724 ENCODE Processing Pipeline 981c55fa6a91248acf41c288e7a58d98 https://www.encodeproject.org/files/ENCFF070JCK/@@download/ENCFF070JCK.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF154LRU bigWig fold change over control ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF581ZJL, ENCFF866PHS 902416433 ENCODE Processing Pipeline 3f8a05a898f7a741809be71f42029088 https://www.encodeproject.org/files/ENCFF154LRU/@@download/ENCFF154LRU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF868KZY bigWig fold change over control ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF350LLA 958997019 ENCODE Processing Pipeline c79f4886375491a64e71251d5d32c08d https://www.encodeproject.org/files/ENCFF868KZY/@@download/ENCFF868KZY.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF581TEU bigWig fold change over control ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF350LLA, ENCFF581ZJL, ENCFF866PHS 1831149260 ENCODE Processing Pipeline 96a16be6a3cc061be0b3b39d65d187f9 https://www.encodeproject.org/files/ENCFF581TEU/@@download/ENCFF581TEU.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF804EPQ bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF350LLA, ENCFF581ZJL, ENCFF866PHS 7186272 ENCODE Processing Pipeline cd57a51b80df2d7d183804360fba3f62 https://www.encodeproject.org/files/ENCFF804EPQ/@@download/ENCFF804EPQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF805KEB bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF350LLA 6635169 ENCODE Processing Pipeline 45e1425a9acf2feddb601a4f89b81aae https://www.encodeproject.org/files/ENCFF805KEB/@@download/ENCFF805KEB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF847FHY bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF581ZJL, ENCFF866PHS 6320438 ENCODE Processing Pipeline 2aa8318060a352cb9fc918b08c5f97b7 https://www.encodeproject.org/files/ENCFF847FHY/@@download/ENCFF847FHY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF084QFT bigBed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF805KEB 13320086 ENCODE Processing Pipeline 0d05d7b1692fc722d94f9bafe4093b4e https://www.encodeproject.org/files/ENCFF084QFT/@@download/ENCFF084QFT.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF162IAF bigBed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF804EPQ 13172467 ENCODE Processing Pipeline e4a132f10c88273804976bb879274471 https://www.encodeproject.org/files/ENCFF162IAF/@@download/ENCFF162IAF.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF894FQV bigBed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF847FHY 13264203 ENCODE Processing Pipeline d0d39d41c18d571f52f266b9b17f28fe https://www.encodeproject.org/files/ENCFF894FQV/@@download/ENCFF894FQV.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF066BXQ bam unfiltered alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF749GVI, ENCFF888ZYM 5258298681 ENCODE Processing Pipeline b31e8aacb805e7f589c9e82887915373 https://www.encodeproject.org/files/ENCFF066BXQ/@@download/ENCFF066BXQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF463IID bam unfiltered alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF007LTF, ENCFF167VUS, ENCFF643CGH 3574592162 ENCODE Processing Pipeline 80740624396a8c9f48a82f19e318b97b https://www.encodeproject.org/files/ENCFF463IID/@@download/ENCFF463IID.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF182YDN bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF007LTF, ENCFF167VUS, ENCFF643CGH 2596971810 ENCODE Processing Pipeline 9e3bd36662d9581688b4594fa27080e8 https://www.encodeproject.org/files/ENCFF182YDN/@@download/ENCFF182YDN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF855NIZ bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF749GVI, ENCFF888ZYM 3336748137 ENCODE Processing Pipeline 54497eff2b2f3f2561a7eaa4001371ac https://www.encodeproject.org/files/ENCFF855NIZ/@@download/ENCFF855NIZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF298MJQ bigWig signal p-value ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF182YDN, ENCFF910IKB 943287050 ENCODE Processing Pipeline 158cc8461477bfe08e3ace5217834167 https://www.encodeproject.org/files/ENCFF298MJQ/@@download/ENCFF298MJQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF758HSC bigWig signal p-value ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF855NIZ 1080190040 ENCODE Processing Pipeline 17fbb6649a0eb9fabafa66e00016c6d0 https://www.encodeproject.org/files/ENCFF758HSC/@@download/ENCFF758HSC.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF055CSS bigWig signal p-value ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF182YDN, ENCFF227IZS, ENCFF855NIZ, ENCFF910IKB 1820462835 ENCODE Processing Pipeline 64270c8254ae266fe976ec2abfa1d255 https://www.encodeproject.org/files/ENCFF055CSS/@@download/ENCFF055CSS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF205BDH bigWig fold change over control ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF182YDN, ENCFF910IKB 908406515 ENCODE Processing Pipeline 1e6db7fd75a37c3c943d8d7c42d63202 https://www.encodeproject.org/files/ENCFF205BDH/@@download/ENCFF205BDH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF608AMY bigWig fold change over control ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF855NIZ 965608527 ENCODE Processing Pipeline 8993aa0610ed302e5d470b376fbbf4a7 https://www.encodeproject.org/files/ENCFF608AMY/@@download/ENCFF608AMY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF742LMU bigWig fold change over control ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF182YDN, ENCFF227IZS, ENCFF855NIZ, ENCFF910IKB 1831443391 ENCODE Processing Pipeline 9ac76bbcdc697317c2acbd4e36234f26 https://www.encodeproject.org/files/ENCFF742LMU/@@download/ENCFF742LMU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF778XYS bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF182YDN, ENCFF910IKB 6218179 ENCODE Processing Pipeline 3da93f5c53738804b6f3c19fd34f13f9 https://www.encodeproject.org/files/ENCFF778XYS/@@download/ENCFF778XYS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF163BVD bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF855NIZ 6514222 ENCODE Processing Pipeline 326fb2e02f8f48898d67623e69d5cf6f https://www.encodeproject.org/files/ENCFF163BVD/@@download/ENCFF163BVD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF153UAP bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF182YDN, ENCFF227IZS, ENCFF855NIZ, ENCFF910IKB 7099573 ENCODE Processing Pipeline c3516d69e6a0ace27b9170975ccf5a4b https://www.encodeproject.org/files/ENCFF153UAP/@@download/ENCFF153UAP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF234TDX bigBed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF778XYS 13255032 ENCODE Processing Pipeline 595d8384e7e5eae78183ff4d2748ad15 https://www.encodeproject.org/files/ENCFF234TDX/@@download/ENCFF234TDX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF054XXF bigBed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF163BVD 13319065 ENCODE Processing Pipeline d11e4fa79f953e569efe69b4e0b0cacc https://www.encodeproject.org/files/ENCFF054XXF/@@download/ENCFF054XXF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF458SFA bigBed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF153UAP 13121136 ENCODE Processing Pipeline 9c42c81bb2b96ae5e749584d845dab25 https://www.encodeproject.org/files/ENCFF458SFA/@@download/ENCFF458SFA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF805OCR bed narrowPeak conservative idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF153UAP, ENCFF163BVD, ENCFF419RSJ, ENCFF778XYS 234353 ENCODE Processing Pipeline 74c977c79ee030ee6a832247710f63a5 https://www.encodeproject.org/files/ENCFF805OCR/@@download/ENCFF805OCR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF577NTN bigBed narrowPeak conservative idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF805OCR 473144 ENCODE Processing Pipeline 67fc23152ec81ae739ef1455ca4c1f19 https://www.encodeproject.org/files/ENCFF577NTN/@@download/ENCFF577NTN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF778PWE bed narrowPeak optimal idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF153UAP, ENCFF163BVD, ENCFF419RSJ, ENCFF778XYS 314329 ENCODE Processing Pipeline 4226c87a701f4ad111bfd234293ec22e https://www.encodeproject.org/files/ENCFF778PWE/@@download/ENCFF778PWE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF286NQL bigBed narrowPeak optimal idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF778PWE 582032 ENCODE Processing Pipeline 0e77282e5878b9b8e24f72e54e59f025 https://www.encodeproject.org/files/ENCFF286NQL/@@download/ENCFF286NQL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF868YHU bigBed narrowPeak optimal idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF699ZII 540068 ENCODE Processing Pipeline d9038c8ed8ce1322c467b5db18530f46 https://www.encodeproject.org/files/ENCFF868YHU/@@download/ENCFF868YHU.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF869BQV bed narrowPeak conservative idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF804EPQ, ENCFF805KEB, ENCFF847FHY 211228 ENCODE Processing Pipeline a5794914da85bfbe1ea16625734ec816 https://www.encodeproject.org/files/ENCFF869BQV/@@download/ENCFF869BQV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF681FCM bigBed narrowPeak conservative idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF869BQV 441085 ENCODE Processing Pipeline 9b91be97e44c5243fead768a6d386d9d https://www.encodeproject.org/files/ENCFF681FCM/@@download/ENCFF681FCM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF699ZII bed narrowPeak optimal idr thresholded peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF804EPQ, ENCFF805KEB, ENCFF847FHY 287070 ENCODE Processing Pipeline 4775f57db3e59a973c0c857c17c0de9b https://www.encodeproject.org/files/ENCFF699ZII/@@download/ENCFF699ZII.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF353IIG fastq reads ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF843LGK 3396165805 Michael Snyder, Stanford 8529341be2867a8a67675fc15fe0480e SRA:SRR6213645 https://www.encodeproject.org/files/ENCFF353IIG/@@download/ENCFF353IIG.fastq.gz Illumina HiSeq 4000 /files/ENCFF592JZV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF843LGK fastq reads ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF353IIG 3080148486 Michael Snyder, Stanford 275a9148a8aea7c4b2e9356e08b94842 SRA:SRR6213645 https://www.encodeproject.org/files/ENCFF843LGK/@@download/ENCFF843LGK.fastq.gz Illumina HiSeq 4000 /files/ENCFF848NLY/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF448EPT bam unfiltered alignments ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF353IIG, ENCFF643CGH, ENCFF843LGK 6162475764 ENCODE Processing Pipeline 40555e3ac96b70db9124435a5780080b https://www.encodeproject.org/files/ENCFF448EPT/@@download/ENCFF448EPT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF497XTZ bam unfiltered alignments ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF353IIG, ENCFF807MUK, ENCFF843LGK 6154566059 ENCODE Processing Pipeline 46768b816ab4ad4fa0123c6912261ba9 https://www.encodeproject.org/files/ENCFF497XTZ/@@download/ENCFF497XTZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF081LPR bam alignments ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF353IIG, ENCFF643CGH, ENCFF843LGK 4131443483 ENCODE Processing Pipeline 955f1f8b26de209c9c8305c180020230 https://www.encodeproject.org/files/ENCFF081LPR/@@download/ENCFF081LPR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF362ALG bam alignments ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF353IIG, ENCFF807MUK, ENCFF843LGK 4123282272 ENCODE Processing Pipeline 0cd2aa3fa337ec09f3056196c30d59a8 https://www.encodeproject.org/files/ENCFF362ALG/@@download/ENCFF362ALG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF307VSP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF334VVP 246295 ENCODE Processing Pipeline b816eac0fcda27af0bf5ccfb4584fe9b https://www.encodeproject.org/files/ENCFF307VSP/@@download/ENCFF307VSP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF953USH bigWig fold change over control ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF362ALG, ENCFF882RAK 1501867898 ENCODE Processing Pipeline 19837356e2d28982bf763cfb58fbd0fb https://www.encodeproject.org/files/ENCFF953USH/@@download/ENCFF953USH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF334VVP bed narrowPeak peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF362ALG, ENCFF882RAK 6421678 ENCODE Processing Pipeline 761c54ff736be3eab357a6cb3e2ab2f3 https://www.encodeproject.org/files/ENCFF334VVP/@@download/ENCFF334VVP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF571UQJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF307VSP 582243 ENCODE Processing Pipeline cab88b743b023b26033ba73958399551 https://www.encodeproject.org/files/ENCFF571UQJ/@@download/ENCFF571UQJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF532JXR bigWig signal p-value ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF362ALG, ENCFF882RAK 1274015960 ENCODE Processing Pipeline 5bd0f5ba8a38fe065d19b46013c05834 https://www.encodeproject.org/files/ENCFF532JXR/@@download/ENCFF532JXR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF527YQJ bigBed narrowPeak peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF334VVP 11456079 ENCODE Processing Pipeline 7db582697a44cf51892c36fd6fab6df4 https://www.encodeproject.org/files/ENCFF527YQJ/@@download/ENCFF527YQJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF972TRW bigWig fold change over control ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF081LPR, ENCFF600VZB 1503575135 ENCODE Processing Pipeline 78e37fc0d0348f9c7e4f3a7e2c6456b3 https://www.encodeproject.org/files/ENCFF972TRW/@@download/ENCFF972TRW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF891SUX bed narrowPeak peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF081LPR, ENCFF600VZB 6409842 ENCODE Processing Pipeline 4193ca06d92514751b7c958647cd2717 https://www.encodeproject.org/files/ENCFF891SUX/@@download/ENCFF891SUX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF137GKK bigBed narrowPeak peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF891SUX 11458869 ENCODE Processing Pipeline 70602607a62b15a420b3370d08275478 https://www.encodeproject.org/files/ENCFF137GKK/@@download/ENCFF137GKK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF477DXO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF680JEG 473727 ENCODE Processing Pipeline a4dafd759e0ca624a5757f1d167946e4 https://www.encodeproject.org/files/ENCFF477DXO/@@download/ENCFF477DXO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF968KYR bigWig signal p-value ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF081LPR, ENCFF600VZB 1530571312 ENCODE Processing Pipeline 51ce090dcdd285de7f47f19f9d22bff0 https://www.encodeproject.org/files/ENCFF968KYR/@@download/ENCFF968KYR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF680JEG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF419RSJ, ENCFF891SUX 239292 ENCODE Processing Pipeline 4def7c540c098f483a78e55506abd267 https://www.encodeproject.org/files/ENCFF680JEG/@@download/ENCFF680JEG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF946CNO bam unfiltered alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 100 ENCFF354UBV, ENCFF600KXI, ENCFF807MUK 4484974784 ENCODE Processing Pipeline 0c4e6aadda8c185bea8b116c9ee3f839 https://www.encodeproject.org/files/ENCFF946CNO/@@download/ENCFF946CNO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF829HRO bam unfiltered alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 100 ENCFF273REO, ENCFF807MUK, ENCFF809ISJ 4348701884 ENCODE Processing Pipeline 5c3a130b973c4c1d5cbce61dcd12f0ec https://www.encodeproject.org/files/ENCFF829HRO/@@download/ENCFF829HRO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF600KXI fastq reads ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF354UBV 2153107128 Michael Snyder, Stanford f9074bbb228cc05a6d394ae31b930469 SRA:SRR5111735 https://www.encodeproject.org/files/ENCFF600KXI/@@download/ENCFF600KXI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF809ISJ fastq reads ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF273REO 2065653655 Michael Snyder, Stanford 721c77dbe1d53ebdc7acf2bfe6d4a37b SRA:SRR5111736 https://www.encodeproject.org/files/ENCFF809ISJ/@@download/ENCFF809ISJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF354UBV fastq reads ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF600KXI 2097124875 Michael Snyder, Stanford 290f57b3ad27712b59e7bafb681420ae SRA:SRR5111735 https://www.encodeproject.org/files/ENCFF354UBV/@@download/ENCFF354UBV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF273REO fastq reads ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF809ISJ 2038500675 Michael Snyder, Stanford 184ee3a95a419999fba32c73f77326ed SRA:SRR5111736 https://www.encodeproject.org/files/ENCFF273REO/@@download/ENCFF273REO.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF254KBN bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 100 ENCFF354UBV, ENCFF600KXI, ENCFF807MUK 3533250682 ENCODE Processing Pipeline 6c89022e08fee3bec3e38172c72ec927 https://www.encodeproject.org/files/ENCFF254KBN/@@download/ENCFF254KBN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF650WIA bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 100 ENCFF273REO, ENCFF807MUK, ENCFF809ISJ 3278333178 ENCODE Processing Pipeline 3b8d5597c7dd0b6de73dedc3b2f9aa75 https://www.encodeproject.org/files/ENCFF650WIA/@@download/ENCFF650WIA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF523FLJ bigWig signal p-value ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF650WIA 1146707680 ENCODE Processing Pipeline 0d501e429513fc7d42922928f459cce4 https://www.encodeproject.org/files/ENCFF523FLJ/@@download/ENCFF523FLJ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF696UUH bigWig signal p-value ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF254KBN 1128882824 ENCODE Processing Pipeline 0eb337cc89a9768ee6fe7ed6decf5a53 https://www.encodeproject.org/files/ENCFF696UUH/@@download/ENCFF696UUH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF178AAH bigWig signal p-value ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF254KBN, ENCFF581ZJL, ENCFF650WIA 1883087999 ENCODE Processing Pipeline 150224c24dde2a566652c5833cd516dd https://www.encodeproject.org/files/ENCFF178AAH/@@download/ENCFF178AAH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF376RXA bigWig fold change over control ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF650WIA 1031099548 ENCODE Processing Pipeline 7ba7624efabe0ad97c652c9ca9917aca https://www.encodeproject.org/files/ENCFF376RXA/@@download/ENCFF376RXA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF696ZVK bigWig fold change over control ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF254KBN 1071767240 ENCODE Processing Pipeline b801efe66ea57b32a42675de2529fb06 https://www.encodeproject.org/files/ENCFF696ZVK/@@download/ENCFF696ZVK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF532QDR bigWig fold change over control ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF254KBN, ENCFF581ZJL, ENCFF650WIA 1953711276 ENCODE Processing Pipeline e19eae00d74877415523939e1c4744d4 https://www.encodeproject.org/files/ENCFF532QDR/@@download/ENCFF532QDR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF124ZGQ bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF650WIA 6505261 ENCODE Processing Pipeline a84f6e7f61469eeb3bde492893558f04 https://www.encodeproject.org/files/ENCFF124ZGQ/@@download/ENCFF124ZGQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF457XPX bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF254KBN 6769825 ENCODE Processing Pipeline 4637ee3d180c920116d1cf40c67d71cf https://www.encodeproject.org/files/ENCFF457XPX/@@download/ENCFF457XPX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF922HJN bigBed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF124ZGQ 13364478 ENCODE Processing Pipeline 298ff81f277443bbfe9ebe86b84d1b48 https://www.encodeproject.org/files/ENCFF922HJN/@@download/ENCFF922HJN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF101GPN bigBed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF457XPX 13324190 ENCODE Processing Pipeline 5b279152520b2a0409567f40590c0376 https://www.encodeproject.org/files/ENCFF101GPN/@@download/ENCFF101GPN.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF103VVN bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF254KBN, ENCFF581ZJL, ENCFF650WIA 7210514 ENCODE Processing Pipeline 3dc7e986e4f8a8b49de1471db3ef0890 https://www.encodeproject.org/files/ENCFF103VVN/@@download/ENCFF103VVN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF309SXP bigBed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF103VVN 13227729 ENCODE Processing Pipeline f8644d5e9ffb8e93d5ffa64ac9bb094d https://www.encodeproject.org/files/ENCFF309SXP/@@download/ENCFF309SXP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF932WIS bam unfiltered alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 100 ENCFF273REO, ENCFF643CGH, ENCFF809ISJ 4351703499 ENCODE Processing Pipeline ac0d6475ab09e113237ff77c8eeaff30 https://www.encodeproject.org/files/ENCFF932WIS/@@download/ENCFF932WIS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF132PRX bam unfiltered alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 100 ENCFF354UBV, ENCFF600KXI, ENCFF643CGH 4487729888 ENCODE Processing Pipeline 726c6b9f1b250f5f0604d7e245f3e8e2 https://www.encodeproject.org/files/ENCFF132PRX/@@download/ENCFF132PRX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF168TBA bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 100 ENCFF273REO, ENCFF643CGH, ENCFF809ISJ 3279239092 ENCODE Processing Pipeline d8a518c944e9b4c56bf622212025506e https://www.encodeproject.org/files/ENCFF168TBA/@@download/ENCFF168TBA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF024NZQ bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 100 ENCFF354UBV, ENCFF600KXI, ENCFF643CGH 3534393611 ENCODE Processing Pipeline f467791454257e40643a1ecdd0ba3cf1 https://www.encodeproject.org/files/ENCFF024NZQ/@@download/ENCFF024NZQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF895BZW bigWig signal p-value ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF168TBA, ENCFF910IKB 960217421 ENCODE Processing Pipeline 62d97c8e2c400beede16e25d697f0a67 https://www.encodeproject.org/files/ENCFF895BZW/@@download/ENCFF895BZW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF611BEF bigWig signal p-value ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF024NZQ, ENCFF227IZS 1002733888 ENCODE Processing Pipeline 5b77e1c7045858874e4ecd67dfb9c3fe https://www.encodeproject.org/files/ENCFF611BEF/@@download/ENCFF611BEF.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF876CEN bigWig signal p-value ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF024NZQ, ENCFF168TBA, ENCFF227IZS, ENCFF910IKB 1901870889 ENCODE Processing Pipeline fa87730ce2b6a3c849bebc15d5d334dc https://www.encodeproject.org/files/ENCFF876CEN/@@download/ENCFF876CEN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF659FNN bigWig fold change over control ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF168TBA, ENCFF910IKB 1030683408 ENCODE Processing Pipeline 89ab8d47e1267b62c0669419f06d453d https://www.encodeproject.org/files/ENCFF659FNN/@@download/ENCFF659FNN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF094SFM bigWig fold change over control ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF024NZQ, ENCFF227IZS 1078814420 ENCODE Processing Pipeline ca9362557e70199af1d11515750e0f1b https://www.encodeproject.org/files/ENCFF094SFM/@@download/ENCFF094SFM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF715NFE bigWig fold change over control ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF024NZQ, ENCFF168TBA, ENCFF227IZS, ENCFF910IKB 1953245621 ENCODE Processing Pipeline a724b2f1f7a1c128fd5e9743e5ff1f04 https://www.encodeproject.org/files/ENCFF715NFE/@@download/ENCFF715NFE.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF030QKC bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF168TBA, ENCFF910IKB 6293246 ENCODE Processing Pipeline 997d7f8b8a4ac0ac0f0ac4457caa2a48 https://www.encodeproject.org/files/ENCFF030QKC/@@download/ENCFF030QKC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF311WKM bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF024NZQ, ENCFF168TBA, ENCFF227IZS, ENCFF910IKB 7151332 ENCODE Processing Pipeline 0b353760a0bc06f90647bebb984bf6a3 https://www.encodeproject.org/files/ENCFF311WKM/@@download/ENCFF311WKM.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF083LFT bigBed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF030QKC 13373288 ENCODE Processing Pipeline 46d8226e4f2393d9f364790f8ed1abab https://www.encodeproject.org/files/ENCFF083LFT/@@download/ENCFF083LFT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF817XZG bigBed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF311WKM 13195106 ENCODE Processing Pipeline 46dcf8c5a1ff57b486a9261c5235ab64 https://www.encodeproject.org/files/ENCFF817XZG/@@download/ENCFF817XZG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF472VUW bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF024NZQ, ENCFF227IZS 6645313 ENCODE Processing Pipeline 8f69cc1736cecc40ef276565fdb0ef60 https://www.encodeproject.org/files/ENCFF472VUW/@@download/ENCFF472VUW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF691HAG bed narrowPeak conservative idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF030QKC, ENCFF311WKM, ENCFF419RSJ, ENCFF472VUW 203612 ENCODE Processing Pipeline 2d1f61f4db20de2a96edb002c3942e18 https://www.encodeproject.org/files/ENCFF691HAG/@@download/ENCFF691HAG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF353SUL bigBed narrowPeak optimal idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF740OPF 607912 ENCODE Processing Pipeline 0e4a76938e18f87ddb581e9da1853f37 https://www.encodeproject.org/files/ENCFF353SUL/@@download/ENCFF353SUL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF740OPF bed narrowPeak optimal idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF030QKC, ENCFF311WKM, ENCFF419RSJ, ENCFF472VUW 316367 ENCODE Processing Pipeline 24167873343f8c9474b61ebc7b91c167 https://www.encodeproject.org/files/ENCFF740OPF/@@download/ENCFF740OPF.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF295WAK bigBed narrowPeak conservative idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF691HAG 447575 ENCODE Processing Pipeline c352c63e2045ff8b4b1154ed9651b7d8 https://www.encodeproject.org/files/ENCFF295WAK/@@download/ENCFF295WAK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF805RRV bigBed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF472VUW 13298721 ENCODE Processing Pipeline 3fe37060ff1ea97b3f2450b9c61bd78a https://www.encodeproject.org/files/ENCFF805RRV/@@download/ENCFF805RRV.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF924XJK bed narrowPeak conservative idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF103VVN, ENCFF124ZGQ, ENCFF457XPX 187397 ENCODE Processing Pipeline 933c6a190f9167d9a591e3cdecf88352 https://www.encodeproject.org/files/ENCFF924XJK/@@download/ENCFF924XJK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF311KUF bigBed narrowPeak conservative idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF924XJK 424667 ENCODE Processing Pipeline 97390bfd61c5a8a311104cda71ffc3a0 https://www.encodeproject.org/files/ENCFF311KUF/@@download/ENCFF311KUF.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF096XMD bed narrowPeak optimal idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF103VVN, ENCFF124ZGQ, ENCFF457XPX 282692 ENCODE Processing Pipeline 59332e8ca90fc4507468b673efd55907 https://www.encodeproject.org/files/ENCFF096XMD/@@download/ENCFF096XMD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF973SKX bigBed narrowPeak optimal idr thresholded peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF096XMD 555499 ENCODE Processing Pipeline 3c9323c3a292a6297bd31fc03f335f36 https://www.encodeproject.org/files/ENCFF973SKX/@@download/ENCFF973SKX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF000NOG bam alignments ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NOT 1440534138 Richard Myers, HAIB 7ab2451816b63d40c2355f1c63640ed8 https://www.encodeproject.org/files/ENCFF000NOG/@@download/ENCFF000NOG.bam hg19 released biological replicates with identical biosample ENCFF000NOI bigBed broadPeak peaks ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVH 652681 Richard Myers, HAIB 35d149202697d1ab30fe9cbdb2690629 https://www.encodeproject.org/files/ENCFF000NOI/@@download/ENCFF000NOI.bigBed hg19 released biological replicates with identical biosample ENCFF000NOJ bigBed broadPeak peaks ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVI 274298 Richard Myers, HAIB 4f9d805d1788997ba591bc2e42da6e4b https://www.encodeproject.org/files/ENCFF000NOJ/@@download/ENCFF000NOJ.bigBed hg19 released biological replicates with identical biosample ENCFF000NOK bam alignments ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NOX 1404326119 Richard Myers, HAIB 80d4bc68bcddd61b11523d0adef20ae8 https://www.encodeproject.org/files/ENCFF000NOK/@@download/ENCFF000NOK.bam hg19 released biological replicates with identical biosample ENCFF000NOL bigWig raw signal ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 149398114 Richard Myers, HAIB 1e8c0f9db9c756c06f2f2a01a543de08 https://www.encodeproject.org/files/ENCFF000NOL/@@download/ENCFF000NOL.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NON bigWig raw signal ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 142785856 Richard Myers, HAIB 8505f95f2f372eabf047f00fa112bcb6 https://www.encodeproject.org/files/ENCFF000NON/@@download/ENCFF000NON.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NOT fastq reads ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1506309534 Richard Myers, HAIB e14e9eca6ae67918501938908d4f2b30 https://www.encodeproject.org/files/ENCFF000NOT/@@download/ENCFF000NOT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NOX fastq reads ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1424166301 Richard Myers, HAIB a0c7ac3a1dde82e94b7d806f148f81bd https://www.encodeproject.org/files/ENCFF000NOX/@@download/ENCFF000NOX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TVH bed broadPeak peaks ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 328690 Richard Myers, HAIB 19c8962b992c146e1d5d7c32eeacb70b https://www.encodeproject.org/files/ENCFF001TVH/@@download/ENCFF001TVH.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVI bed broadPeak peaks ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 129410 Richard Myers, HAIB 82e352735064efb7b4f0f0b1535e3ee5 https://www.encodeproject.org/files/ENCFF001TVI/@@download/ENCFF001TVI.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF229DMT fastq reads ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 2 ENCFF262KPJ 3597476587 Michael Snyder, Stanford 1eb661813307c6ab1be6be2048c7f0c2 SRA:SRR6214092 https://www.encodeproject.org/files/ENCFF229DMT/@@download/ENCFF229DMT.fastq.gz Illumina HiSeq 4000 /files/ENCFF646GDJ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF262KPJ fastq reads ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 1 100 paired-ended 1 ENCFF229DMT 3434633155 Michael Snyder, Stanford 9c151169f691a452e6954c495346bad7 SRA:SRR6214092 https://www.encodeproject.org/files/ENCFF262KPJ/@@download/ENCFF262KPJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF313OIF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF821IKR bam unfiltered alignments ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF229DMT, ENCFF262KPJ, ENCFF807MUK 5892698136 ENCODE Processing Pipeline 64084e5b7f3869a57ad2290101bf21e4 https://www.encodeproject.org/files/ENCFF821IKR/@@download/ENCFF821IKR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF109GFQ bam unfiltered alignments ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF229DMT, ENCFF262KPJ, ENCFF643CGH 5887611092 ENCODE Processing Pipeline a91de8bc1fcdac4c63b2b14937f896ee https://www.encodeproject.org/files/ENCFF109GFQ/@@download/ENCFF109GFQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF048YPV bam alignments ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF229DMT, ENCFF262KPJ, ENCFF643CGH 2538607746 ENCODE Processing Pipeline 94043d4486dc397eb79c83eb681105b9 https://www.encodeproject.org/files/ENCFF048YPV/@@download/ENCFF048YPV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF347PVY bam alignments ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF229DMT, ENCFF262KPJ, ENCFF807MUK 2535686027 ENCODE Processing Pipeline 1d8e0ded069ae659f7407766f35f665d https://www.encodeproject.org/files/ENCFF347PVY/@@download/ENCFF347PVY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF073NOY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF316LSD 1128640 ENCODE Processing Pipeline a32e2a0a8836c0810117cb75819f4faf https://www.encodeproject.org/files/ENCFF073NOY/@@download/ENCFF073NOY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565BRK bigBed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF999RRH 13614223 ENCODE Processing Pipeline d9e35cf700d4e729ef699d6591b5c69c https://www.encodeproject.org/files/ENCFF565BRK/@@download/ENCFF565BRK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF316LSD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF001TDO, ENCFF999RRH 676194 ENCODE Processing Pipeline f2be4eb4ae95f46848a4e2084891e1bf https://www.encodeproject.org/files/ENCFF316LSD/@@download/ENCFF316LSD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF500NWW bigWig signal p-value ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF347PVY, ENCFF791LLR 1119392107 ENCODE Processing Pipeline 546badbb4bad29b9007dc33078bbf5ea https://www.encodeproject.org/files/ENCFF500NWW/@@download/ENCFF500NWW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF773FNZ bigWig fold change over control ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF347PVY, ENCFF791LLR 1151241248 ENCODE Processing Pipeline 309f07a44ca63be6cacc46661e5d8533 https://www.encodeproject.org/files/ENCFF773FNZ/@@download/ENCFF773FNZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF999RRH bed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF347PVY, ENCFF791LLR 6620179 ENCODE Processing Pipeline 038ec91b4e74e9a4e0334923115eabbb https://www.encodeproject.org/files/ENCFF999RRH/@@download/ENCFF999RRH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF880BEB bigWig signal p-value ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF048YPV, ENCFF512QNP 1219536649 ENCODE Processing Pipeline b065f076f7396cdb69b5be93cdd97c0c https://www.encodeproject.org/files/ENCFF880BEB/@@download/ENCFF880BEB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF354LVF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF907KEJ 1129541 ENCODE Processing Pipeline 88673628b6dec162baa532385ae1415c https://www.encodeproject.org/files/ENCFF354LVF/@@download/ENCFF354LVF.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF007DYR bigWig fold change over control ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF048YPV, ENCFF512QNP 1116473606 ENCODE Processing Pipeline a79ff10fc068b8b5b98473baef2a0e1e https://www.encodeproject.org/files/ENCFF007DYR/@@download/ENCFF007DYR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF569LWP bigBed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF306LCT 13652192 ENCODE Processing Pipeline 9b386242d0950139e53106d35ead4988 https://www.encodeproject.org/files/ENCFF569LWP/@@download/ENCFF569LWP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF306LCT bed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF048YPV, ENCFF512QNP 6639477 ENCODE Processing Pipeline d2b5151160070b56cb176ba5376af557 https://www.encodeproject.org/files/ENCFF306LCT/@@download/ENCFF306LCT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF907KEJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF306LCT, ENCFF419RSJ 674345 ENCODE Processing Pipeline e6b5bdd7d25b283393e4bb927cbcdac3 https://www.encodeproject.org/files/ENCFF907KEJ/@@download/ENCFF907KEJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF891KUP fastq reads ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF964ODQ 3508189795 Michael Snyder, Stanford 52d878dc702db844fcff558128d6b1b1 SRA:SRR6213045 https://www.encodeproject.org/files/ENCFF891KUP/@@download/ENCFF891KUP.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF890MKU fastq reads ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF201EHD 4104939828 Michael Snyder, Stanford 39d675a443c80d3c73b64fcafde82459 SRA:SRR6213046 https://www.encodeproject.org/files/ENCFF890MKU/@@download/ENCFF890MKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF964ODQ fastq reads ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF891KUP 3491816550 Michael Snyder, Stanford 124de8ace13e1edc933e8af2fa3df2cb SRA:SRR6213045 https://www.encodeproject.org/files/ENCFF964ODQ/@@download/ENCFF964ODQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF201EHD fastq reads ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF890MKU 4128918959 Michael Snyder, Stanford 486961e84fd7586df079013aae5fe355 SRA:SRR6213046 https://www.encodeproject.org/files/ENCFF201EHD/@@download/ENCFF201EHD.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF799WRI bam unfiltered alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF807MUK, ENCFF891KUP, ENCFF964ODQ 7071399616 ENCODE Processing Pipeline fc931ffa9e39100e4456b44104a82d8a https://www.encodeproject.org/files/ENCFF799WRI/@@download/ENCFF799WRI.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF115OLW bam unfiltered alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF201EHD, ENCFF807MUK, ENCFF890MKU 8194177466 ENCODE Processing Pipeline 1da49b9e612aaa5d2181663b01615b97 https://www.encodeproject.org/files/ENCFF115OLW/@@download/ENCFF115OLW.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF548HKD bam unfiltered alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF201EHD, ENCFF643CGH, ENCFF890MKU 8207423349 ENCODE Processing Pipeline 2328117bfe2bb65b75d61edbd9d5bcc3 https://www.encodeproject.org/files/ENCFF548HKD/@@download/ENCFF548HKD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF560XXB bam unfiltered alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF891KUP, ENCFF964ODQ 7083596644 ENCODE Processing Pipeline cadf2fd4d0a321842ebab3e2123f30d8 https://www.encodeproject.org/files/ENCFF560XXB/@@download/ENCFF560XXB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF272RAF bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF807MUK, ENCFF891KUP, ENCFF964ODQ 6161595250 ENCODE Processing Pipeline 4060449e9dbeb8eadfd350856268410e https://www.encodeproject.org/files/ENCFF272RAF/@@download/ENCFF272RAF.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF375RFW bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF891KUP, ENCFF964ODQ 6167043970 ENCODE Processing Pipeline 9a2ef1390fa88dab082ce5336aa5bcd4 https://www.encodeproject.org/files/ENCFF375RFW/@@download/ENCFF375RFW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF706RWY bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF201EHD, ENCFF643CGH, ENCFF890MKU 7139336063 ENCODE Processing Pipeline 88810d374387a6228d330700a55f9e03 https://www.encodeproject.org/files/ENCFF706RWY/@@download/ENCFF706RWY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF031AVI bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF201EHD, ENCFF807MUK, ENCFF890MKU 7133038059 ENCODE Processing Pipeline c5ce65d6bc4fc127800cab2e37fb727b https://www.encodeproject.org/files/ENCFF031AVI/@@download/ENCFF031AVI.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF652BWE bigWig signal p-value ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF031AVI, ENCFF272RAF 1964738240 ENCODE Processing Pipeline 89751faab8a66b4724e7678d5de3a591 https://www.encodeproject.org/files/ENCFF652BWE/@@download/ENCFF652BWE.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF906FVA bigWig signal p-value ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF375RFW 1383732006 ENCODE Processing Pipeline 8585c26735accf2ecd168cb2f77f401b https://www.encodeproject.org/files/ENCFF906FVA/@@download/ENCFF906FVA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF379SVD bigWig signal p-value ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF706RWY 1369669507 ENCODE Processing Pipeline 7a067138b32a0b295c55200dc445ddb3 https://www.encodeproject.org/files/ENCFF379SVD/@@download/ENCFF379SVD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF317RRB bigWig signal p-value ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF272RAF 1385064594 ENCODE Processing Pipeline b10b92f3934ee4f4b54be30462abfc44 https://www.encodeproject.org/files/ENCFF317RRB/@@download/ENCFF317RRB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF760OVV bigWig fold change over control ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF375RFW 1652012452 ENCODE Processing Pipeline 7fa1fd24fac1edb0c0a2555671a089dc https://www.encodeproject.org/files/ENCFF760OVV/@@download/ENCFF760OVV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF461IPF bigWig fold change over control ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF272RAF 1641220127 ENCODE Processing Pipeline 17c6ba7cc05606eade8ddba639fb86de https://www.encodeproject.org/files/ENCFF461IPF/@@download/ENCFF461IPF.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF407BRT bigWig signal p-value ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031AVI 1747131534 ENCODE Processing Pipeline 5f023975d453b89757504394f3e4d456 https://www.encodeproject.org/files/ENCFF407BRT/@@download/ENCFF407BRT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF874JRH bigWig signal p-value ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF375RFW, ENCFF706RWY 1966302200 ENCODE Processing Pipeline d652b88fbda2896a22fe74b035a2b822 https://www.encodeproject.org/files/ENCFF874JRH/@@download/ENCFF874JRH.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF830KIB bigWig fold change over control ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031AVI 1778411967 ENCODE Processing Pipeline 40088b5074ad610b8f1904272fe5c4fe https://www.encodeproject.org/files/ENCFF830KIB/@@download/ENCFF830KIB.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF478AGL bigWig fold change over control ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF031AVI, ENCFF272RAF 2291440837 ENCODE Processing Pipeline 295408b582cedd8947387784ff9115a2 https://www.encodeproject.org/files/ENCFF478AGL/@@download/ENCFF478AGL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF498QTD bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF031AVI, ENCFF272RAF 7301311 ENCODE Processing Pipeline 7f5f50d604dcfbbe99ae858586df5354 https://www.encodeproject.org/files/ENCFF498QTD/@@download/ENCFF498QTD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF596HIN bigWig fold change over control ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF706RWY 1771556727 ENCODE Processing Pipeline 2113fe7a14768b1942eae29f12ea6ff6 https://www.encodeproject.org/files/ENCFF596HIN/@@download/ENCFF596HIN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF150AVW bigWig fold change over control ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF375RFW, ENCFF706RWY 2301750386 ENCODE Processing Pipeline ba66dd3329300c6f26ceea2ca312d66b https://www.encodeproject.org/files/ENCFF150AVW/@@download/ENCFF150AVW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF530SLI bigBed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF498QTD 11097165 ENCODE Processing Pipeline 271c375ee2a48c48c3e719f0004fc5bb https://www.encodeproject.org/files/ENCFF530SLI/@@download/ENCFF530SLI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF112OBU bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF272RAF 6692403 ENCODE Processing Pipeline b42158922bfe1653c81ff769b66c984f https://www.encodeproject.org/files/ENCFF112OBU/@@download/ENCFF112OBU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF586QMR bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031AVI 6863395 ENCODE Processing Pipeline badf1b8ee9da9331466c9ff635727465 https://www.encodeproject.org/files/ENCFF586QMR/@@download/ENCFF586QMR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF669YNX bigBed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF586QMR 11132811 ENCODE Processing Pipeline a382e994cd023678b7b0097008febeff https://www.encodeproject.org/files/ENCFF669YNX/@@download/ENCFF669YNX.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF464FKJ bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF375RFW, ENCFF706RWY 7312527 ENCODE Processing Pipeline 3bf0bcf41381fd293e193e361310413b https://www.encodeproject.org/files/ENCFF464FKJ/@@download/ENCFF464FKJ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF913MVO bigBed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF655CFS 11150669 ENCODE Processing Pipeline 9d681fb9734a0cadf45e7d1ba547516b https://www.encodeproject.org/files/ENCFF913MVO/@@download/ENCFF913MVO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF148PGH bigBed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF112OBU 11126299 ENCODE Processing Pipeline 3475385be34f01d4dc9f5f743b176181 https://www.encodeproject.org/files/ENCFF148PGH/@@download/ENCFF148PGH.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF373PMF bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF375RFW 6636928 ENCODE Processing Pipeline ea04fb3ef40da9ac9c255d5cbe50fa2a https://www.encodeproject.org/files/ENCFF373PMF/@@download/ENCFF373PMF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF655CFS bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF706RWY 6866802 ENCODE Processing Pipeline 6f125fe205603f0319eb53e7681f70bd https://www.encodeproject.org/files/ENCFF655CFS/@@download/ENCFF655CFS.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF185JFL bigBed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF373PMF 11133758 ENCODE Processing Pipeline 4aec903190ef8e399782a72f0eba7d6a https://www.encodeproject.org/files/ENCFF185JFL/@@download/ENCFF185JFL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF497OLY bed narrowPeak conservative idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF112OBU, ENCFF498QTD, ENCFF586QMR 87446 ENCODE Processing Pipeline deb42ec92d70a0d9151bca81702c675f https://www.encodeproject.org/files/ENCFF497OLY/@@download/ENCFF497OLY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF131INS bigBed narrowPeak conservative idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF497OLY 218714 ENCODE Processing Pipeline 168f0b3f5fda6473526a4e5524248248 https://www.encodeproject.org/files/ENCFF131INS/@@download/ENCFF131INS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF051IFG bigBed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF464FKJ 11113201 ENCODE Processing Pipeline fac4fab9fbd4041c5a923488fb6bc154 https://www.encodeproject.org/files/ENCFF051IFG/@@download/ENCFF051IFG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF163VTM bigBed narrowPeak conservative idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF221OEX 223015 ENCODE Processing Pipeline 0b8f1d476677b0687921d5c02722e652 https://www.encodeproject.org/files/ENCFF163VTM/@@download/ENCFF163VTM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF058JCF bed narrowPeak optimal idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF112OBU, ENCFF498QTD, ENCFF586QMR 142237 ENCODE Processing Pipeline 7591e7c68cd75d13e1d322c6f604138c https://www.encodeproject.org/files/ENCFF058JCF/@@download/ENCFF058JCF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF074PQA bigBed narrowPeak optimal idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF058JCF 305564 ENCODE Processing Pipeline 34dce4e87a9f85c13a1c1149615b70c0 https://www.encodeproject.org/files/ENCFF074PQA/@@download/ENCFF074PQA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF221OEX bed narrowPeak conservative idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF373PMF, ENCFF419RSJ, ENCFF464FKJ, ENCFF655CFS 88893 ENCODE Processing Pipeline c0c1cc2b5e8ba75baed0194a872a69fc https://www.encodeproject.org/files/ENCFF221OEX/@@download/ENCFF221OEX.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF804ZLF bed narrowPeak optimal idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF373PMF, ENCFF419RSJ, ENCFF464FKJ, ENCFF655CFS 146227 ENCODE Processing Pipeline 8eeababfab257e430c4b9aa1f511e66a https://www.encodeproject.org/files/ENCFF804ZLF/@@download/ENCFF804ZLF.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF720WAE bigBed narrowPeak optimal idr thresholded peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF804ZLF 314266 ENCODE Processing Pipeline 65873614dc754b975ea97e7e585858fc https://www.encodeproject.org/files/ENCFF720WAE/@@download/ENCFF720WAE.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF118DJV bam unfiltered alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002DZU, ENCFF807MUK 1083854669 ENCODE Processing Pipeline 1cb1d264c4717ef39e35972ecf430453 https://www.encodeproject.org/files/ENCFF118DJV/@@download/ENCFF118DJV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF987GAL bam unfiltered alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZV, ENCFF807MUK 1245329417 ENCODE Processing Pipeline 416dab2ecc23ad559fe4de43e77f6fa0 https://www.encodeproject.org/files/ENCFF987GAL/@@download/ENCFF987GAL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF002DZU fastq reads ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 873177374 Michael Snyder, Stanford 5bc1097b9cfa80658f05ff86eafb1442 SRA:SRR5112372 https://www.encodeproject.org/files/ENCFF002DZU/@@download/ENCFF002DZU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF002DZV fastq reads ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1022576889 Michael Snyder, Stanford 7fa22ed68cf714da9cdd6d5a2edf8ab4 SRA:SRR5112371 https://www.encodeproject.org/files/ENCFF002DZV/@@download/ENCFF002DZV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF488TLJ bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF002DZU, ENCFF807MUK 747026823 ENCODE Processing Pipeline 93c44ebd20e703cfd33d8f9a329ca222 https://www.encodeproject.org/files/ENCFF488TLJ/@@download/ENCFF488TLJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF416AFC bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF002DZV, ENCFF807MUK 812112185 ENCODE Processing Pipeline 3ac89abd5915983a9e1167c4564f5601 https://www.encodeproject.org/files/ENCFF416AFC/@@download/ENCFF416AFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF322UPW bigWig signal p-value ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF488TLJ 499121167 ENCODE Processing Pipeline b1ac7d90ac063641955448d11c247663 https://www.encodeproject.org/files/ENCFF322UPW/@@download/ENCFF322UPW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF449LBP bigWig fold change over control ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF416AFC, ENCFF863STQ 464259177 ENCODE Processing Pipeline 3a159812ad8bb86c1e12144909930574 https://www.encodeproject.org/files/ENCFF449LBP/@@download/ENCFF449LBP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF400DFW bigWig signal p-value ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF416AFC, ENCFF863STQ 560681454 ENCODE Processing Pipeline bd2acecd583685b31057735a42d53c98 https://www.encodeproject.org/files/ENCFF400DFW/@@download/ENCFF400DFW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF333DJC bigWig signal p-value ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF416AFC, ENCFF425JYG, ENCFF488TLJ, ENCFF863STQ 1005196724 ENCODE Processing Pipeline d81d55651ed2e316082d4ec24cad9a26 https://www.encodeproject.org/files/ENCFF333DJC/@@download/ENCFF333DJC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF665NJI bigWig fold change over control ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF416AFC, ENCFF425JYG, ENCFF488TLJ, ENCFF863STQ 972034805 ENCODE Processing Pipeline 249b319e3132a2303bdeb06ac466e01a https://www.encodeproject.org/files/ENCFF665NJI/@@download/ENCFF665NJI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF995JWD bigBed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF716DUT 10750223 ENCODE Processing Pipeline cf93d9be117ca848f6989e8d77345db0 https://www.encodeproject.org/files/ENCFF995JWD/@@download/ENCFF995JWD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF775ODT bed narrowPeak conservative idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF155WKH, ENCFF716DUT, ENCFF967FLQ 26893 ENCODE Processing Pipeline 0ead86695483d4868a6c77d6f38eeeb8 https://www.encodeproject.org/files/ENCFF775ODT/@@download/ENCFF775ODT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF716DUT bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF488TLJ 4179753 ENCODE Processing Pipeline fca7441aee74fefffdd6b17704e8539d https://www.encodeproject.org/files/ENCFF716DUT/@@download/ENCFF716DUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF967FLQ bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF416AFC, ENCFF425JYG, ENCFF488TLJ, ENCFF863STQ 5922207 ENCODE Processing Pipeline bf1a01c9022f2c93db5867c0586025ca https://www.encodeproject.org/files/ENCFF967FLQ/@@download/ENCFF967FLQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF130MHC bigBed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF155WKH 11016369 ENCODE Processing Pipeline fb139f53962acdfd430eabfac7ce20fd https://www.encodeproject.org/files/ENCFF130MHC/@@download/ENCFF130MHC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF867OUV bigWig fold change over control ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF488TLJ 401108694 ENCODE Processing Pipeline 870602cc605f414cba336e9483fac964 https://www.encodeproject.org/files/ENCFF867OUV/@@download/ENCFF867OUV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF155WKH bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF416AFC, ENCFF863STQ 4436264 ENCODE Processing Pipeline fde6209238af978fbcf2595e0e0d151f https://www.encodeproject.org/files/ENCFF155WKH/@@download/ENCFF155WKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF918TOL bigBed narrowPeak conservative idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF775ODT 85181 ENCODE Processing Pipeline a9487da1dbdf5d687247d33fe06286c1 https://www.encodeproject.org/files/ENCFF918TOL/@@download/ENCFF918TOL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF208NRD bigBed narrowPeak optimal idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF708LCH 91546 ENCODE Processing Pipeline f8f5d0c5f5050f8503ad031f988eb0b9 https://www.encodeproject.org/files/ENCFF208NRD/@@download/ENCFF208NRD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF926CND bigBed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF967FLQ 11430641 ENCODE Processing Pipeline a0d3407f623e02742ea091e6c824c98c https://www.encodeproject.org/files/ENCFF926CND/@@download/ENCFF926CND.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF708LCH bed narrowPeak optimal idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF155WKH, ENCFF716DUT, ENCFF967FLQ 31888 ENCODE Processing Pipeline 707010bb7e38adb0fb4b076267d2cc41 https://www.encodeproject.org/files/ENCFF708LCH/@@download/ENCFF708LCH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF959LON bam unfiltered alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002DZU, ENCFF643CGH 1088843105 ENCODE Processing Pipeline 580b4e6d9ce50307696e49d239880719 https://www.encodeproject.org/files/ENCFF959LON/@@download/ENCFF959LON.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF830WDM bam unfiltered alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZV, ENCFF643CGH 1251093807 ENCODE Processing Pipeline 32c5b5bdcd7d464df221f052d64f0fb2 https://www.encodeproject.org/files/ENCFF830WDM/@@download/ENCFF830WDM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF755QDV bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZV, ENCFF643CGH 812020974 ENCODE Processing Pipeline af7927210b39c407dd93f971b561803f https://www.encodeproject.org/files/ENCFF755QDV/@@download/ENCFF755QDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF853NYR bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002DZU, ENCFF643CGH 746916317 ENCODE Processing Pipeline 546e9cd1784b17fcc116ecf9fe96952b https://www.encodeproject.org/files/ENCFF853NYR/@@download/ENCFF853NYR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF447BDR bigWig signal p-value ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF755QDV, ENCFF918AJW 536098877 ENCODE Processing Pipeline c8ab6c21396b37ce20746c950afb4c8c https://www.encodeproject.org/files/ENCFF447BDR/@@download/ENCFF447BDR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF692JGD bigWig signal p-value ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF755QDV, ENCFF853NYR, ENCFF918AJW, ENCFF949XNJ 1181986682 ENCODE Processing Pipeline 088e2879c98c09c628ebc131eefa626b https://www.encodeproject.org/files/ENCFF692JGD/@@download/ENCFF692JGD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF742NFB bigWig signal p-value ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF853NYR, ENCFF949XNJ 603337513 ENCODE Processing Pipeline 430ed9ee55e3932c82b113d3ff0f491d https://www.encodeproject.org/files/ENCFF742NFB/@@download/ENCFF742NFB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF897SFR bigWig fold change over control ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF755QDV, ENCFF918AJW 479065671 ENCODE Processing Pipeline 780ec7e95f6f730b49bc8e8d1d157226 https://www.encodeproject.org/files/ENCFF897SFR/@@download/ENCFF897SFR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF204CKA bigWig fold change over control ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF853NYR, ENCFF949XNJ 400598296 ENCODE Processing Pipeline 8d77ce6554389a3d8a40dbfe9c88b081 https://www.encodeproject.org/files/ENCFF204CKA/@@download/ENCFF204CKA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF589XFT bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF755QDV, ENCFF918AJW 4224594 ENCODE Processing Pipeline a6fe160467d0a287b410dc2d524af3aa https://www.encodeproject.org/files/ENCFF589XFT/@@download/ENCFF589XFT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF114IVM bigWig fold change over control ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF755QDV, ENCFF853NYR, ENCFF918AJW, ENCFF949XNJ 992982953 ENCODE Processing Pipeline 4f3cf6a0b67773f941b265dee44777fa https://www.encodeproject.org/files/ENCFF114IVM/@@download/ENCFF114IVM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF775ZQY bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF853NYR, ENCFF949XNJ 4130789 ENCODE Processing Pipeline a88e51af5f4ed50a1f50ab225b5061cd https://www.encodeproject.org/files/ENCFF775ZQY/@@download/ENCFF775ZQY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF914MDV bigBed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF775ZQY 10724187 ENCODE Processing Pipeline 6afc6010d9003bf01faaee0a1eed29eb https://www.encodeproject.org/files/ENCFF914MDV/@@download/ENCFF914MDV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF930ARL bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF755QDV, ENCFF853NYR, ENCFF918AJW, ENCFF949XNJ 5659569 ENCODE Processing Pipeline 76e5732f803aa2f36233a78d2391484f https://www.encodeproject.org/files/ENCFF930ARL/@@download/ENCFF930ARL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF432SAH bigBed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF589XFT 10784846 ENCODE Processing Pipeline 7dc816792c86459c025e416b321be543 https://www.encodeproject.org/files/ENCFF432SAH/@@download/ENCFF432SAH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF099XTV bigBed narrowPeak conservative idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF155CWQ 85410 ENCODE Processing Pipeline aab0bd5a763e6c1f9fd72f699364a5a0 https://www.encodeproject.org/files/ENCFF099XTV/@@download/ENCFF099XTV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF155CWQ bed narrowPeak conservative idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF589XFT, ENCFF775ZQY, ENCFF930ARL 26950 ENCODE Processing Pipeline 9c4752dd264d5397b9911e818dc4d313 https://www.encodeproject.org/files/ENCFF155CWQ/@@download/ENCFF155CWQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF127HJG bed narrowPeak optimal idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF589XFT, ENCFF775ZQY, ENCFF930ARL 32449 ENCODE Processing Pipeline 42f39c07f864523915ddea3e24635a9d https://www.encodeproject.org/files/ENCFF127HJG/@@download/ENCFF127HJG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF126HQI bigBed narrowPeak optimal idr thresholded peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF127HJG 92522 ENCODE Processing Pipeline 28275b6b34e477df313cbfc66e84ca5f https://www.encodeproject.org/files/ENCFF126HQI/@@download/ENCFF126HQI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF174QMI bigBed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF930ARL 11424123 ENCODE Processing Pipeline 2a5c3a1133c23bd9f87f1f99db87ab9d https://www.encodeproject.org/files/ENCFF174QMI/@@download/ENCFF174QMI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF000YOS fastq reads ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 339545256 Sherman Weissman, Yale 9cb4b5011f82615ffca787c7508736a7 https://www.encodeproject.org/files/ENCFF000YOS/@@download/ENCFF000YOS.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YOU fastq reads ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 503492336 Sherman Weissman, Yale f3d7c25a7330574e834c11da9bdb469c https://www.encodeproject.org/files/ENCFF000YOU/@@download/ENCFF000YOU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YVY bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOS 434660637 Sherman Weissman, Yale 1164f5368ebccbba4169fc99f977cbe7 https://www.encodeproject.org/files/ENCFF000YVY/@@download/ENCFF000YVY.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YVZ bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOU 637240446 Sherman Weissman, Yale 5e7a59eb1f2cb4d284e8d0058000d68e https://www.encodeproject.org/files/ENCFF000YVZ/@@download/ENCFF000YVZ.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWA bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOD 495556 Sherman Weissman, Yale 5b02c7db351b20f5cda5b0e4bd07bb23 https://www.encodeproject.org/files/ENCFF000YWA/@@download/ENCFF000YWA.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWB bigWig signal ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 287073989 Sherman Weissman, Yale 887fd3a5d52d62b974e3be3544cbfbeb https://www.encodeproject.org/files/ENCFF000YWB/@@download/ENCFF000YWB.bigWig hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOD bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 184328 Sherman Weissman, Yale d0fcc2fae7c18772508d2e9676a411ea https://www.encodeproject.org/files/ENCFF001VOD/@@download/ENCFF001VOD.bed.gz hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CXM bed narrowPeak optimal idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 277358 ENCODE Consortium Analysis Working Group cb46bdb294329aff6896b6c0f804bbc7 https://www.encodeproject.org/files/ENCFF002CXM/@@download/ENCFF002CXM.bed.gz hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF242XXW bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXM 753061 ENCODE Consortium b39281a8170223c693d0bf41d44ab1fc https://www.encodeproject.org/files/ENCFF242XXW/@@download/ENCFF242XXW.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF599THE bam unfiltered alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOS, ENCFF807MUK 435178305 ENCODE Processing Pipeline b69b254d4fee6201c789c196d6437153 https://www.encodeproject.org/files/ENCFF599THE/@@download/ENCFF599THE.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF454MRU bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOS, ENCFF807MUK 288508382 ENCODE Processing Pipeline f65bde2aeaeca820f1ef260f590fe269 https://www.encodeproject.org/files/ENCFF454MRU/@@download/ENCFF454MRU.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF976EMR bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOS, ENCFF643CGH 288154540 ENCODE Processing Pipeline ea410e5c8524596d8ac34259ab1a7bf5 https://www.encodeproject.org/files/ENCFF976EMR/@@download/ENCFF976EMR.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF556FRG bam unfiltered alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOS, ENCFF643CGH 435720994 ENCODE Processing Pipeline af9f202cae808b8de6236c9fdbf96475 https://www.encodeproject.org/files/ENCFF556FRG/@@download/ENCFF556FRG.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF600WEJ bam unfiltered alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOU, ENCFF807MUK 575486471 ENCODE Processing Pipeline ca0963a581ee6349b1db5feb2eee8133 https://www.encodeproject.org/files/ENCFF600WEJ/@@download/ENCFF600WEJ.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF466HUV bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOU, ENCFF807MUK 294656434 ENCODE Processing Pipeline f93925a7b402301128eee01b9fc5f91b https://www.encodeproject.org/files/ENCFF466HUV/@@download/ENCFF466HUV.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF544QGF bam unfiltered alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOU, ENCFF643CGH 577059679 ENCODE Processing Pipeline 2e9b8a438e4c9f5201c19eb6abaa2c40 https://www.encodeproject.org/files/ENCFF544QGF/@@download/ENCFF544QGF.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF323MTY bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOU, ENCFF643CGH 294153029 ENCODE Processing Pipeline a09dff64d09b96bb734781c57e0b8346 https://www.encodeproject.org/files/ENCFF323MTY/@@download/ENCFF323MTY.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF258VMQ bigWig signal p-value ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF767FSP, ENCFF976EMR 251755247 ENCODE Processing Pipeline 0c69c676f4c384c6cdf18ff97d12918b https://www.encodeproject.org/files/ENCFF258VMQ/@@download/ENCFF258VMQ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF533NLU bigWig fold change over control ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF454MRU, ENCFF650MOB 142882301 ENCODE Processing Pipeline 0c0e061120628e840d3acabc52846e70 https://www.encodeproject.org/files/ENCFF533NLU/@@download/ENCFF533NLU.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF794ADR bigWig signal p-value ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF454MRU, ENCFF650MOB 247545131 ENCODE Processing Pipeline 401d3dcf3b81d46a10fda4e002866af4 https://www.encodeproject.org/files/ENCFF794ADR/@@download/ENCFF794ADR.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF063LKT bigWig signal p-value ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF454MRU, ENCFF466HUV, ENCFF650MOB 305059388 ENCODE Processing Pipeline eff600e1f182c073221e06648ce67462 https://www.encodeproject.org/files/ENCFF063LKT/@@download/ENCFF063LKT.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF531ZGM bigWig signal p-value ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF323MTY, ENCFF767FSP 239512246 ENCODE Processing Pipeline 238f0d7b469e816686030d2c1f80e4d4 https://www.encodeproject.org/files/ENCFF531ZGM/@@download/ENCFF531ZGM.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF093ING bigWig signal p-value ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF466HUV, ENCFF650MOB 269378826 ENCODE Processing Pipeline 8c5ef5e377dadd3ce396a745b68c9d0c https://www.encodeproject.org/files/ENCFF093ING/@@download/ENCFF093ING.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF355JDJ bigWig signal p-value ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF323MTY, ENCFF767FSP, ENCFF976EMR 308457395 ENCODE Processing Pipeline aef24aa64a6b680c81a8e220d9525974 https://www.encodeproject.org/files/ENCFF355JDJ/@@download/ENCFF355JDJ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF831RAZ bigWig fold change over control ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF767FSP, ENCFF976EMR 142578563 ENCODE Processing Pipeline 5121a736bf13607dd74edbe4c3137e88 https://www.encodeproject.org/files/ENCFF831RAZ/@@download/ENCFF831RAZ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF441MSA bigWig fold change over control ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF323MTY, ENCFF767FSP 140741943 ENCODE Processing Pipeline 4c47818c0ff6afda52aea5897297ba70 https://www.encodeproject.org/files/ENCFF441MSA/@@download/ENCFF441MSA.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF573ZMO bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF466HUV, ENCFF650MOB 3850971 ENCODE Processing Pipeline 74c008bd757c6d578f4dcedfc1637ff4 https://www.encodeproject.org/files/ENCFF573ZMO/@@download/ENCFF573ZMO.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002ZYX bigWig fold change over control ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF323MTY, ENCFF767FSP, ENCFF976EMR 246350102 ENCODE Processing Pipeline 0ae11ae6655d3221741e72af7463d113 https://www.encodeproject.org/files/ENCFF002ZYX/@@download/ENCFF002ZYX.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF311MKC bigWig fold change over control ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF454MRU, ENCFF466HUV, ENCFF650MOB 245878815 ENCODE Processing Pipeline dbeb6ae414aed03978ade8507766f225 https://www.encodeproject.org/files/ENCFF311MKC/@@download/ENCFF311MKC.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF791BYM bigWig fold change over control ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF466HUV, ENCFF650MOB 135920121 ENCODE Processing Pipeline 6b23bf2a2ab6c52466df5f4cc84db11b https://www.encodeproject.org/files/ENCFF791BYM/@@download/ENCFF791BYM.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF301QYN bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF573ZMO 9733893 ENCODE Processing Pipeline e3aa459ae47a5574029002f3b7724511 https://www.encodeproject.org/files/ENCFF301QYN/@@download/ENCFF301QYN.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF368DTT bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF454MRU, ENCFF650MOB 5165500 ENCODE Processing Pipeline b2516f78e2380fda0832e66adb41f82f https://www.encodeproject.org/files/ENCFF368DTT/@@download/ENCFF368DTT.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF502ZBE bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF454MRU, ENCFF466HUV, ENCFF650MOB 5928682 ENCODE Processing Pipeline f5efc8a924b03586579828582a373ff3 https://www.encodeproject.org/files/ENCFF502ZBE/@@download/ENCFF502ZBE.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF957KTN bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF323MTY, ENCFF767FSP 3593607 ENCODE Processing Pipeline 5084d6b0a1bfb45803a0a4d4829ea7cd https://www.encodeproject.org/files/ENCFF957KTN/@@download/ENCFF957KTN.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF649AEV bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF767FSP, ENCFF976EMR 5249812 ENCODE Processing Pipeline 4efad11cc85307d87ca817b956ebfbe0 https://www.encodeproject.org/files/ENCFF649AEV/@@download/ENCFF649AEV.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF095QTJ bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF502ZBE 12403722 ENCODE Processing Pipeline 2d3dc4b5a057a3e4bd05cbd7079079fb https://www.encodeproject.org/files/ENCFF095QTJ/@@download/ENCFF095QTJ.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF842HZT bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF323MTY, ENCFF767FSP, ENCFF976EMR 5926687 ENCODE Processing Pipeline 3996d5273c51c5a1700409a65e21dccf https://www.encodeproject.org/files/ENCFF842HZT/@@download/ENCFF842HZT.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF419CNI bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF368DTT 11022723 ENCODE Processing Pipeline 1e55aa17f64f7425eb5116a85ba2f54f https://www.encodeproject.org/files/ENCFF419CNI/@@download/ENCFF419CNI.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF407SGY bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF649AEV 11109950 ENCODE Processing Pipeline bebac3094794d6902397397d09401462 https://www.encodeproject.org/files/ENCFF407SGY/@@download/ENCFF407SGY.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF772UWM bed narrowPeak conservative idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF368DTT, ENCFF502ZBE, ENCFF573ZMO 306209 ENCODE Processing Pipeline f3d4a2bbb85e48cf99a78773a346516e https://www.encodeproject.org/files/ENCFF772UWM/@@download/ENCFF772UWM.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF662YQK bed narrowPeak optimal idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF368DTT, ENCFF502ZBE, ENCFF573ZMO 329502 ENCODE Processing Pipeline f8f090e562e1e4b21badd0f06731c1e1 https://www.encodeproject.org/files/ENCFF662YQK/@@download/ENCFF662YQK.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF976PQJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF772UWM 666795 ENCODE Processing Pipeline f5a82c48162169e93abb67bb035b2871 https://www.encodeproject.org/files/ENCFF976PQJ/@@download/ENCFF976PQJ.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF571WCN bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF957KTN 7775906 ENCODE Processing Pipeline 9bff620aa2ec69ee1424e045bfb25660 https://www.encodeproject.org/files/ENCFF571WCN/@@download/ENCFF571WCN.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF953IAN bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF662YQK 698939 ENCODE Processing Pipeline cc1cefa664430e757524c4c02f25b664 https://www.encodeproject.org/files/ENCFF953IAN/@@download/ENCFF953IAN.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF793VEV bigBed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF842HZT 12407694 ENCODE Processing Pipeline 4dc53a5358eb3298c8bb642d5ff52c85 https://www.encodeproject.org/files/ENCFF793VEV/@@download/ENCFF793VEV.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF432VIV bed narrowPeak conservative idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF649AEV, ENCFF842HZT, ENCFF957KTN 306724 ENCODE Processing Pipeline 901f746eee80e464cd6b31b9e41ce2f7 https://www.encodeproject.org/files/ENCFF432VIV/@@download/ENCFF432VIV.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF413CLT bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF432VIV 668871 ENCODE Processing Pipeline 42b1be7f019910b27ccaa22d7d7414b8 https://www.encodeproject.org/files/ENCFF413CLT/@@download/ENCFF413CLT.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF776EUB bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF668VIK 697288 ENCODE Processing Pipeline 3758060a731bbc1513fcdd0a08397d60 https://www.encodeproject.org/files/ENCFF776EUB/@@download/ENCFF776EUB.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF668VIK bed narrowPeak optimal idr thresholded peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF649AEV, ENCFF842HZT, ENCFF957KTN 327240 ENCODE Processing Pipeline 9da46723e82c01d8cac75af9b1c42054 https://www.encodeproject.org/files/ENCFF668VIK/@@download/ENCFF668VIK.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF448ELH bam unfiltered alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432GOG, ENCFF580CTA, ENCFF807MUK 3344615066 ENCODE Processing Pipeline a3d37852aee6fa2250ea3e53f3d2b872 https://www.encodeproject.org/files/ENCFF448ELH/@@download/ENCFF448ELH.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF731MRC bam unfiltered alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF248HYP, ENCFF807MUK, ENCFF824XIN 3250998548 ENCODE Processing Pipeline 9a5382532f3dffb32915a8a90456dfb8 https://www.encodeproject.org/files/ENCFF731MRC/@@download/ENCFF731MRC.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF580CTA fastq reads ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF432GOG 1460457598 Michael Snyder, Stanford 164de139c902ee0ea87536879833e204 https://www.encodeproject.org/files/ENCFF580CTA/@@download/ENCFF580CTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF432GOG fastq reads ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF580CTA 1543159989 Michael Snyder, Stanford fb303f9005b05defbf22f9e7ab6d773b https://www.encodeproject.org/files/ENCFF432GOG/@@download/ENCFF432GOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF824XIN fastq reads ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF248HYP 1426594752 Michael Snyder, Stanford 30e026a49f7e3125cddbb66b9f4aa503 https://www.encodeproject.org/files/ENCFF824XIN/@@download/ENCFF824XIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF248HYP fastq reads ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF824XIN 1510484392 Michael Snyder, Stanford b84c0f8ba4c40275ea652f8083807067 https://www.encodeproject.org/files/ENCFF248HYP/@@download/ENCFF248HYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF078WRQ bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF248HYP, ENCFF807MUK, ENCFF824XIN 2455063764 ENCODE Processing Pipeline 706d81dde39328f151d7f6cdad70c021 https://www.encodeproject.org/files/ENCFF078WRQ/@@download/ENCFF078WRQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF669HLL bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432GOG, ENCFF580CTA, ENCFF807MUK 2520532581 ENCODE Processing Pipeline 7b1aea01dcfed52a4f32f6c7df8693de https://www.encodeproject.org/files/ENCFF669HLL/@@download/ENCFF669HLL.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF488BMW bigWig signal p-value ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF078WRQ, ENCFF581ZJL 871152404 ENCODE Processing Pipeline 5fdd33686d96d7ca0cb132e19568d34b https://www.encodeproject.org/files/ENCFF488BMW/@@download/ENCFF488BMW.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF710EKA bigWig signal p-value ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF669HLL 842684754 ENCODE Processing Pipeline d60911da10627ea31f17b850f7a150b1 https://www.encodeproject.org/files/ENCFF710EKA/@@download/ENCFF710EKA.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF672PUU bigWig signal p-value ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF078WRQ, ENCFF581ZJL, ENCFF669HLL 1789616680 ENCODE Processing Pipeline 70a8ae23ffa83f492206efa0826ca7f2 https://www.encodeproject.org/files/ENCFF672PUU/@@download/ENCFF672PUU.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF835NDN bigWig fold change over control ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF078WRQ, ENCFF581ZJL 900211732 ENCODE Processing Pipeline 7b31498f74d0401555eda5e41d623a61 https://www.encodeproject.org/files/ENCFF835NDN/@@download/ENCFF835NDN.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF927BKD bigWig fold change over control ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF669HLL 882998147 ENCODE Processing Pipeline c7644f617f99d9182ad5a431f89ed64b https://www.encodeproject.org/files/ENCFF927BKD/@@download/ENCFF927BKD.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF951RIW bigWig fold change over control ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF078WRQ, ENCFF581ZJL, ENCFF669HLL 1774497491 ENCODE Processing Pipeline 63b2c04ac5f4dc8ffeae0e28499cbc8b https://www.encodeproject.org/files/ENCFF951RIW/@@download/ENCFF951RIW.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF586VID bigBed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF434UXV 11149048 ENCODE Processing Pipeline f9483e8eeccbf4325a61951e23e70e37 https://www.encodeproject.org/files/ENCFF586VID/@@download/ENCFF586VID.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF310DOZ bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF669HLL 5924348 ENCODE Processing Pipeline 14b3f3d8ab5a0509cdc620d42c6ac978 https://www.encodeproject.org/files/ENCFF310DOZ/@@download/ENCFF310DOZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF434UXV bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF078WRQ, ENCFF581ZJL 6121491 ENCODE Processing Pipeline 9e7a73b61fd9f2cad156317b4ebb9bea https://www.encodeproject.org/files/ENCFF434UXV/@@download/ENCFF434UXV.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF082MXA bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF078WRQ, ENCFF581ZJL, ENCFF669HLL 6998910 ENCODE Processing Pipeline 3a238ed715655731324f9400fe59a7e0 https://www.encodeproject.org/files/ENCFF082MXA/@@download/ENCFF082MXA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF917SDW bigBed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF310DOZ 11108218 ENCODE Processing Pipeline 6206091c5d10894d716bc612891e0de9 https://www.encodeproject.org/files/ENCFF917SDW/@@download/ENCFF917SDW.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF331PSM bigBed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF082MXA 11072040 ENCODE Processing Pipeline d01e068cebae665eaafe5580e4eb41a0 https://www.encodeproject.org/files/ENCFF331PSM/@@download/ENCFF331PSM.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF144YOM bam unfiltered alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF248HYP, ENCFF643CGH, ENCFF824XIN 3251742867 ENCODE Processing Pipeline dd9c0aeb667cc94b2a3d9a38d4fa1da8 https://www.encodeproject.org/files/ENCFF144YOM/@@download/ENCFF144YOM.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF473TNA bam unfiltered alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432GOG, ENCFF580CTA, ENCFF643CGH 3345810940 ENCODE Processing Pipeline e79210df51c3ed6ad0eedf5caf99973d https://www.encodeproject.org/files/ENCFF473TNA/@@download/ENCFF473TNA.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF513UKV bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF248HYP, ENCFF643CGH, ENCFF824XIN 2456554174 ENCODE Processing Pipeline 7ab7426fb9bc30485ca7189470720f53 https://www.encodeproject.org/files/ENCFF513UKV/@@download/ENCFF513UKV.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF054NSG bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432GOG, ENCFF580CTA, ENCFF643CGH 2522154208 ENCODE Processing Pipeline e07e0e417c9d72d6cd7c2003393757d9 https://www.encodeproject.org/files/ENCFF054NSG/@@download/ENCFF054NSG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF435PBF bigWig signal p-value ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF513UKV, ENCFF910IKB 1001529397 ENCODE Processing Pipeline bd6f17869779b3a7ed72821abcdbff90 https://www.encodeproject.org/files/ENCFF435PBF/@@download/ENCFF435PBF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF419DUN bigWig signal p-value ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF054NSG, ENCFF227IZS 990711513 ENCODE Processing Pipeline 5d67f0d18d7b414d1c3ec4c4fd2eca35 https://www.encodeproject.org/files/ENCFF419DUN/@@download/ENCFF419DUN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF397EMU bigWig signal p-value ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF054NSG, ENCFF227IZS, ENCFF513UKV, ENCFF910IKB 1642955914 ENCODE Processing Pipeline 92b0692030852230a091d30d1e4344f8 https://www.encodeproject.org/files/ENCFF397EMU/@@download/ENCFF397EMU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF595WDT bigWig fold change over control ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF513UKV, ENCFF910IKB 898405005 ENCODE Processing Pipeline 074cbcea7d989fad5e31b42b713b94b1 https://www.encodeproject.org/files/ENCFF595WDT/@@download/ENCFF595WDT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF429RPN bigWig fold change over control ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF054NSG, ENCFF227IZS 891725202 ENCODE Processing Pipeline ae5701332d07f27e2b561b585c486670 https://www.encodeproject.org/files/ENCFF429RPN/@@download/ENCFF429RPN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF616UEL bigWig fold change over control ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF054NSG, ENCFF227IZS, ENCFF513UKV, ENCFF910IKB 1796603981 ENCODE Processing Pipeline e0e3c6ac43ea1233d1cd2d7c54a28ccc https://www.encodeproject.org/files/ENCFF616UEL/@@download/ENCFF616UEL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF826NFB bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF513UKV, ENCFF910IKB 5993620 ENCODE Processing Pipeline 2e3b0fde9f7559a8c83c68db909f136b https://www.encodeproject.org/files/ENCFF826NFB/@@download/ENCFF826NFB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF557EJD bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF054NSG, ENCFF227IZS 5738244 ENCODE Processing Pipeline 1a2224fc10dbc53ebe2d3641d8109c35 https://www.encodeproject.org/files/ENCFF557EJD/@@download/ENCFF557EJD.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF400VAN bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF054NSG, ENCFF227IZS, ENCFF513UKV, ENCFF910IKB 6931376 ENCODE Processing Pipeline b451788d4262acf9c98be54d7922570f https://www.encodeproject.org/files/ENCFF400VAN/@@download/ENCFF400VAN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF086GND bigBed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF826NFB 11150017 ENCODE Processing Pipeline 71ec21037becf0fe1d6e7180a0545d8f https://www.encodeproject.org/files/ENCFF086GND/@@download/ENCFF086GND.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF139YRD bigBed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF557EJD 11101728 ENCODE Processing Pipeline a64d0f810eae1c7d503aae970d78e0a4 https://www.encodeproject.org/files/ENCFF139YRD/@@download/ENCFF139YRD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF655SRT bigBed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF400VAN 11084593 ENCODE Processing Pipeline 2df7ac7481c6e0a6f20fe47116af8018 https://www.encodeproject.org/files/ENCFF655SRT/@@download/ENCFF655SRT.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF705FAV bed narrowPeak conservative idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF400VAN, ENCFF419RSJ, ENCFF557EJD, ENCFF826NFB 86901 ENCODE Processing Pipeline 75333e314f040465d6c14ac3dee225d9 https://www.encodeproject.org/files/ENCFF705FAV/@@download/ENCFF705FAV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF527UOO bigBed narrowPeak conservative idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF705FAV 228764 ENCODE Processing Pipeline d1c2224a99317950808efdeb8e06b0d4 https://www.encodeproject.org/files/ENCFF527UOO/@@download/ENCFF527UOO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF074WRG bed narrowPeak optimal idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF400VAN, ENCFF419RSJ, ENCFF557EJD, ENCFF826NFB 121805 ENCODE Processing Pipeline 2a6c5d6008862ed4d106f8cfca59e679 https://www.encodeproject.org/files/ENCFF074WRG/@@download/ENCFF074WRG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF857IEQ bigBed narrowPeak optimal idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF074WRG 285319 ENCODE Processing Pipeline 5de04f744c339568def16a4b78e8e75a https://www.encodeproject.org/files/ENCFF857IEQ/@@download/ENCFF857IEQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF346SGM bed narrowPeak conservative idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF082MXA, ENCFF310DOZ, ENCFF434UXV 70996 ENCODE Processing Pipeline 814045f72b9d5e69e9d92d368709fd9f https://www.encodeproject.org/files/ENCFF346SGM/@@download/ENCFF346SGM.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF386WKY bed narrowPeak optimal idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF082MXA, ENCFF310DOZ, ENCFF434UXV 99822 ENCODE Processing Pipeline 0bd29eef25235deb45fd77ec5aaa0ce4 https://www.encodeproject.org/files/ENCFF386WKY/@@download/ENCFF386WKY.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF086KJS bigBed narrowPeak optimal idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF386WKY 205397 ENCODE Processing Pipeline c4f4cf9f888efab782601739707ed6b6 https://www.encodeproject.org/files/ENCFF086KJS/@@download/ENCFF086KJS.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF050ODE bigBed narrowPeak conservative idr thresholded peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF346SGM 168231 ENCODE Processing Pipeline 402b27bc53269855ad696e489c0823f0 https://www.encodeproject.org/files/ENCFF050ODE/@@download/ENCFF050ODE.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF000NSY bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NTN 1232438998 Richard Myers, HAIB 0fd1b112d0169fc1c4033ded5277c6c8 https://www.encodeproject.org/files/ENCFF000NSY/@@download/ENCFF000NSY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NSZ bigBed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWJ 596956 Richard Myers, HAIB 5672e81e76202f615d56c1f126e7378e https://www.encodeproject.org/files/ENCFF000NSZ/@@download/ENCFF000NSZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NTA bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NTL 802177400 Richard Myers, HAIB 7711544e4be8a3eae17fa20e9b9ea37f https://www.encodeproject.org/files/ENCFF000NTA/@@download/ENCFF000NTA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NTB bigBed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWK 221782 Richard Myers, HAIB 0058e56162ef151a6116feba65e60998 https://www.encodeproject.org/files/ENCFF000NTB/@@download/ENCFF000NTB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NTC bigWig raw signal ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 38539521 Richard Myers, HAIB 75078b9d68ce211465647211a50584e9 https://www.encodeproject.org/files/ENCFF000NTC/@@download/ENCFF000NTC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NTE bigWig raw signal ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 16910964 Richard Myers, HAIB 3ed63f9d4f0a1b3ef64c8488566725f8 https://www.encodeproject.org/files/ENCFF000NTE/@@download/ENCFF000NTE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NTL fastq reads ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 914397894 Richard Myers, HAIB 93bcf708bdd4a287e1b23bedf97bc2a9 https://www.encodeproject.org/files/ENCFF000NTL/@@download/ENCFF000NTL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NTN fastq reads ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1175212931 Richard Myers, HAIB 496c34442931c5cb22f6c94fb3ade59a https://www.encodeproject.org/files/ENCFF000NTN/@@download/ENCFF000NTN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF001TWJ bed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 1 356710 Richard Myers, HAIB d44e7109ff806385dcf5fe652f154f88 https://www.encodeproject.org/files/ENCFF001TWJ/@@download/ENCFF001TWJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF001TWK bed broadPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 1 116920 Richard Myers, HAIB ce8c00771b95f138b4c803e6f15914ef https://www.encodeproject.org/files/ENCFF001TWK/@@download/ENCFF001TWK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CGS bed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 300102 ENCODE Consortium Analysis Working Group 1fa40f4212396dbecc511b3a3a361c40 https://www.encodeproject.org/files/ENCFF002CGS/@@download/ENCFF002CGS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF651IOE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGS 680572 ENCODE Consortium 6fcc6143017983f97b794d637c5f2cab https://www.encodeproject.org/files/ENCFF651IOE/@@download/ENCFF651IOE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF563KYU bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF643CGH 988569892 ENCODE Processing Pipeline f13a3dbe74afb41561bfbbeb48b4b05f https://www.encodeproject.org/files/ENCFF563KYU/@@download/ENCFF563KYU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF488UTP bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF643CGH 294183826 ENCODE Processing Pipeline 956fbb715ae034e32517219907b21b33 https://www.encodeproject.org/files/ENCFF488UTP/@@download/ENCFF488UTP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF227WBP bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF643CGH 568731531 ENCODE Processing Pipeline e20f34788a79aa28efaa021ee8846b26 https://www.encodeproject.org/files/ENCFF227WBP/@@download/ENCFF227WBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF408CVD bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF643CGH 1440943972 ENCODE Processing Pipeline 9d3461f5b70c2ecb60802cc2ced90025 https://www.encodeproject.org/files/ENCFF408CVD/@@download/ENCFF408CVD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF511GDC bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF807MUK 1010475457 ENCODE Processing Pipeline 3a6c2c332aa4658fb731fdda23d168af https://www.encodeproject.org/files/ENCFF511GDC/@@download/ENCFF511GDC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF288XGA bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF807MUK 288418113 ENCODE Processing Pipeline de5cff384c79044d71cf40d3569e9cac https://www.encodeproject.org/files/ENCFF288XGA/@@download/ENCFF288XGA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF462BJG bam unfiltered alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF807MUK 1444156283 ENCODE Processing Pipeline ffa182711f76e3449557e6846c442436 https://www.encodeproject.org/files/ENCFF462BJG/@@download/ENCFF462BJG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF032GHF bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF807MUK 562707311 ENCODE Processing Pipeline 7eab4857a7a7dfa7117daed7623e4339 https://www.encodeproject.org/files/ENCFF032GHF/@@download/ENCFF032GHF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF016DLE bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488UTP, ENCFF488YYE 392189845 ENCODE Processing Pipeline de4f1bd06a3d366717f6035812aafa2c https://www.encodeproject.org/files/ENCFF016DLE/@@download/ENCFF016DLE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF503JPY bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF227WBP, ENCFF488YYE 359365390 ENCODE Processing Pipeline 10fbef5811b1811a9b59e291d5b1658c https://www.encodeproject.org/files/ENCFF503JPY/@@download/ENCFF503JPY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF935GIB bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF227WBP, ENCFF488UTP, ENCFF488YYE 473249907 ENCODE Processing Pipeline 5f202e70cd1c157c688525cf0cde80a6 https://www.encodeproject.org/files/ENCFF935GIB/@@download/ENCFF935GIB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF244BKM bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488UTP, ENCFF488YYE 170212421 ENCODE Processing Pipeline d6366840196097d5e24544d29cb7e7ca https://www.encodeproject.org/files/ENCFF244BKM/@@download/ENCFF244BKM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF098GAJ bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF227WBP, ENCFF488YYE 297207866 ENCODE Processing Pipeline be0ed51957af99409454c1e85ea73fc7 https://www.encodeproject.org/files/ENCFF098GAJ/@@download/ENCFF098GAJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF641QFU bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF227WBP, ENCFF488UTP, ENCFF488YYE 411510434 ENCODE Processing Pipeline cd0066ef6a8ebd232e239d26bcad7e2d https://www.encodeproject.org/files/ENCFF641QFU/@@download/ENCFF641QFU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF972GFU bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488UTP, ENCFF488YYE 2951079 ENCODE Processing Pipeline f1561b6c77dfada4d32e5ff63bd8fd47 https://www.encodeproject.org/files/ENCFF972GFU/@@download/ENCFF972GFU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF496OFD bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF227WBP, ENCFF488YYE 5198625 ENCODE Processing Pipeline 358c2de132d16c4751cdffefe7d1d3ff https://www.encodeproject.org/files/ENCFF496OFD/@@download/ENCFF496OFD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF414UGE bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF496OFD 10804944 ENCODE Processing Pipeline cc7b919196e246d3559cf6e537bcb8d2 https://www.encodeproject.org/files/ENCFF414UGE/@@download/ENCFF414UGE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF500PRU bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF972GFU 6916046 ENCODE Processing Pipeline e1609176e372f9492331713edafb491d https://www.encodeproject.org/files/ENCFF500PRU/@@download/ENCFF500PRU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF202MSE bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF829IXH 13207639 ENCODE Processing Pipeline 6d0796c4638d22ef24e9f3777704fd02 https://www.encodeproject.org/files/ENCFF202MSE/@@download/ENCFF202MSE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF829IXH bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF227WBP, ENCFF488UTP, ENCFF488YYE 5649000 ENCODE Processing Pipeline 0f8e51cd2a040ec8a7bb888c8035f7ec https://www.encodeproject.org/files/ENCFF829IXH/@@download/ENCFF829IXH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF516SWI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF372AVL 423790 ENCODE Processing Pipeline 899b1187bb009d1425fad9bc3d5ce877 https://www.encodeproject.org/files/ENCFF516SWI/@@download/ENCFF516SWI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF247MHT bed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF496OFD, ENCFF829IXH, ENCFF972GFU 354886 ENCODE Processing Pipeline f9d7460a309b718a585ea184b29a774d https://www.encodeproject.org/files/ENCFF247MHT/@@download/ENCFF247MHT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF372AVL bed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF496OFD, ENCFF829IXH, ENCFF972GFU 213774 ENCODE Processing Pipeline b14947d6d493821cb64ab777a73478ae https://www.encodeproject.org/files/ENCFF372AVL/@@download/ENCFF372AVL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF845RCE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF247MHT 750433 ENCODE Processing Pipeline ba36f1e9b093b02dcbe46249db2a522f https://www.encodeproject.org/files/ENCFF845RCE/@@download/ENCFF845RCE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF841KSW bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 382603089 ENCODE Processing Pipeline 2f86f65279e8d143eeba91df9581436f https://www.encodeproject.org/files/ENCFF841KSW/@@download/ENCFF841KSW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF401QAO bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 297635972 ENCODE Processing Pipeline a47b13a47916b8c2f93fa79f64ad8629 https://www.encodeproject.org/files/ENCFF401QAO/@@download/ENCFF401QAO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF100MDQ bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 412010375 ENCODE Processing Pipeline fc417feecd7d36ab470f0780649d590f https://www.encodeproject.org/files/ENCFF100MDQ/@@download/ENCFF100MDQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF735HRJ bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 171086757 ENCODE Processing Pipeline d8e2e4cd515d50f3ea77e007bf50179c https://www.encodeproject.org/files/ENCFF735HRJ/@@download/ENCFF735HRJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF051AFL bigWig signal p-value ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032GHF, ENCFF288XGA, ENCFF963CVB 473738610 ENCODE Processing Pipeline 073713cbc9ec56a4b30d8c6c5d085d3e https://www.encodeproject.org/files/ENCFF051AFL/@@download/ENCFF051AFL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF366FDQ bigWig fold change over control ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032GHF, ENCFF288XGA, ENCFF963CVB 410658922 ENCODE Processing Pipeline ce052fa503bd0cfc5320a75d790eef9d https://www.encodeproject.org/files/ENCFF366FDQ/@@download/ENCFF366FDQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF306BBY bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 2985778 ENCODE Processing Pipeline c46c23e747f2bc9a1837549baa2c03be https://www.encodeproject.org/files/ENCFF306BBY/@@download/ENCFF306BBY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF255RCD bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032GHF, ENCFF288XGA, ENCFF963CVB 5665089 ENCODE Processing Pipeline fbaab1c7d059db1d98d6a8790ac757e4 https://www.encodeproject.org/files/ENCFF255RCD/@@download/ENCFF255RCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF017OSU bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 5216391 ENCODE Processing Pipeline 5746764b38acb3c4e39b1660aad372a7 https://www.encodeproject.org/files/ENCFF017OSU/@@download/ENCFF017OSU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF228QBI bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255RCD 13214772 ENCODE Processing Pipeline 37102a12d6c1c9235f1a2a92fe72beff https://www.encodeproject.org/files/ENCFF228QBI/@@download/ENCFF228QBI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF082EYY bed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF017OSU, ENCFF255RCD, ENCFF306BBY 204750 ENCODE Processing Pipeline 761995c3b71e1ad89946880b68ee5762 https://www.encodeproject.org/files/ENCFF082EYY/@@download/ENCFF082EYY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF617HIT bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF017OSU 10826355 ENCODE Processing Pipeline 13002eba792a952a5632c0d4881e3436 https://www.encodeproject.org/files/ENCFF617HIT/@@download/ENCFF617HIT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF542OHT bigBed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF306BBY 6993825 ENCODE Processing Pipeline 9f3ebe753891f0674a1f2c6e9385087c https://www.encodeproject.org/files/ENCFF542OHT/@@download/ENCFF542OHT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF625SHY bed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF017OSU, ENCFF255RCD, ENCFF306BBY 357177 ENCODE Processing Pipeline 27296c76fc5b23b80e229644883fa76d https://www.encodeproject.org/files/ENCFF625SHY/@@download/ENCFF625SHY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF963QXH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF082EYY 411796 ENCODE Processing Pipeline b055b40fba5bc806bd762c6e1669cf47 https://www.encodeproject.org/files/ENCFF963QXH/@@download/ENCFF963QXH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF557EXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF625SHY 754126 ENCODE Processing Pipeline a835b6a2e439c574cfed581736526536 https://www.encodeproject.org/files/ENCFF557EXZ/@@download/ENCFF557EXZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF538ISP bam unfiltered alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF243UPQ, ENCFF301GHT, ENCFF807MUK 5166180384 ENCODE Processing Pipeline 350e35fbc3994e71f6357abfd11bb277 https://www.encodeproject.org/files/ENCFF538ISP/@@download/ENCFF538ISP.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF620VYW bam unfiltered alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF603CIN, ENCFF772FZX, ENCFF807MUK 3790091073 ENCODE Processing Pipeline 3900980329caf909c8daf256faeb7342 https://www.encodeproject.org/files/ENCFF620VYW/@@download/ENCFF620VYW.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF301GHT fastq reads ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF243UPQ 2419593962 Michael Snyder, Stanford a265b1343cf0d0c3754abaea42cc1d6b https://www.encodeproject.org/files/ENCFF301GHT/@@download/ENCFF301GHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF603CIN fastq reads ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF772FZX 1760242873 Michael Snyder, Stanford 140f752a344659532c332ddf49d3f186 https://www.encodeproject.org/files/ENCFF603CIN/@@download/ENCFF603CIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF243UPQ fastq reads ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF301GHT 2513376218 Michael Snyder, Stanford 736978b2fcf9e0185960beaceb4fd6b1 https://www.encodeproject.org/files/ENCFF243UPQ/@@download/ENCFF243UPQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF772FZX fastq reads ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF603CIN 1725000343 Michael Snyder, Stanford 1b83a83ab8400ac2abc33c7400677100 https://www.encodeproject.org/files/ENCFF772FZX/@@download/ENCFF772FZX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF085VSJ bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF243UPQ, ENCFF301GHT, ENCFF807MUK 3713415003 ENCODE Processing Pipeline f6ee85d38c5d20cb3b0b8d0d4fbfc43d https://www.encodeproject.org/files/ENCFF085VSJ/@@download/ENCFF085VSJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF924KFO bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF603CIN, ENCFF772FZX, ENCFF807MUK 2953462026 ENCODE Processing Pipeline ccfe849e43262a008a8b93e007922262 https://www.encodeproject.org/files/ENCFF924KFO/@@download/ENCFF924KFO.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF573MZM bigWig signal p-value ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF924KFO 897247748 ENCODE Processing Pipeline 33bbb36c8493079d544dec7e8943b86e https://www.encodeproject.org/files/ENCFF573MZM/@@download/ENCFF573MZM.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF162DVV bigWig signal p-value ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF085VSJ 960127349 ENCODE Processing Pipeline 0a010949ed66372366b2b12327c20923 https://www.encodeproject.org/files/ENCFF162DVV/@@download/ENCFF162DVV.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF937ULX bigWig signal p-value ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF085VSJ, ENCFF581ZJL, ENCFF924KFO 1670226685 ENCODE Processing Pipeline ecfe1b24a973c6a860714849a4a7f0ef https://www.encodeproject.org/files/ENCFF937ULX/@@download/ENCFF937ULX.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF045OKJ bigWig fold change over control ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF924KFO 927835555 ENCODE Processing Pipeline 6ecd5cdcdd7a838acdb1cff34f416093 https://www.encodeproject.org/files/ENCFF045OKJ/@@download/ENCFF045OKJ.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF983VCT bigWig fold change over control ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF085VSJ 1068199736 ENCODE Processing Pipeline 266c85ce7b07dc8c4b72cde58c30a7f4 https://www.encodeproject.org/files/ENCFF983VCT/@@download/ENCFF983VCT.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF093MRW bigWig fold change over control ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF085VSJ, ENCFF581ZJL, ENCFF924KFO 1895908915 ENCODE Processing Pipeline e5d3ea5790e3b9b5392910bf3d69ef68 https://www.encodeproject.org/files/ENCFF093MRW/@@download/ENCFF093MRW.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF713DFK bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF924KFO 6995781 ENCODE Processing Pipeline 7ac0da1320eb4d89fc2a472ee1b731e8 https://www.encodeproject.org/files/ENCFF713DFK/@@download/ENCFF713DFK.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF249GYD bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF085VSJ 6794677 ENCODE Processing Pipeline 399ad20964e01340f9aea8e025cbfd10 https://www.encodeproject.org/files/ENCFF249GYD/@@download/ENCFF249GYD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF971RYI bigBed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF249GYD 13087070 ENCODE Processing Pipeline 9e72ba6f35f604b4f96c2266aa7c5bf0 https://www.encodeproject.org/files/ENCFF971RYI/@@download/ENCFF971RYI.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF952KDF bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF085VSJ, ENCFF581ZJL, ENCFF924KFO 7143137 ENCODE Processing Pipeline c36b19d1edcddcc25701ff1cb7c9c709 https://www.encodeproject.org/files/ENCFF952KDF/@@download/ENCFF952KDF.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF858NBR bigBed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF952KDF 12680088 ENCODE Processing Pipeline da85c7c4fc26a149fee69a819d70da8a https://www.encodeproject.org/files/ENCFF858NBR/@@download/ENCFF858NBR.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF012ARZ bigBed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF713DFK 12782276 ENCODE Processing Pipeline 44f2008b0c3ba656b25e7faf38c66b80 https://www.encodeproject.org/files/ENCFF012ARZ/@@download/ENCFF012ARZ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF609YEW bam unfiltered alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF603CIN, ENCFF643CGH, ENCFF772FZX 3792015147 ENCODE Processing Pipeline 93f75b86e3c45ca639dce515caa3a04c https://www.encodeproject.org/files/ENCFF609YEW/@@download/ENCFF609YEW.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF814RLQ bam unfiltered alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF243UPQ, ENCFF301GHT, ENCFF643CGH 5169138879 ENCODE Processing Pipeline 9a4c802443971c8979d1620fd782b891 https://www.encodeproject.org/files/ENCFF814RLQ/@@download/ENCFF814RLQ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF978NVP bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF603CIN, ENCFF643CGH, ENCFF772FZX 2956929565 ENCODE Processing Pipeline 6fb467814d689848536386e13bdd4c89 https://www.encodeproject.org/files/ENCFF978NVP/@@download/ENCFF978NVP.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF606IOS bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF243UPQ, ENCFF301GHT, ENCFF643CGH 3716858972 ENCODE Processing Pipeline a83de8b84accdca907a0e96e12719965 https://www.encodeproject.org/files/ENCFF606IOS/@@download/ENCFF606IOS.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF773EKF bigWig signal p-value ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF910IKB, ENCFF978NVP 974122752 ENCODE Processing Pipeline 2b3961559f73c019c6ea60aa39d47251 https://www.encodeproject.org/files/ENCFF773EKF/@@download/ENCFF773EKF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF836FAZ bigWig signal p-value ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF606IOS 1098288154 ENCODE Processing Pipeline 50386b48b9fedc7d4da533d89a0bffd6 https://www.encodeproject.org/files/ENCFF836FAZ/@@download/ENCFF836FAZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF607YAQ bigWig signal p-value ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF606IOS, ENCFF910IKB, ENCFF978NVP 1594857046 ENCODE Processing Pipeline 43d97a94a87d10d70b575e98d212eef8 https://www.encodeproject.org/files/ENCFF607YAQ/@@download/ENCFF607YAQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF784ASP bigWig fold change over control ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF910IKB, ENCFF978NVP 954786762 ENCODE Processing Pipeline c4e9d76a4edbea6d67c877cbc3c17513 https://www.encodeproject.org/files/ENCFF784ASP/@@download/ENCFF784ASP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF548YTZ bigWig fold change over control ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF606IOS 1073611652 ENCODE Processing Pipeline a399bacb426fa8d375343761df6eb437 https://www.encodeproject.org/files/ENCFF548YTZ/@@download/ENCFF548YTZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF113PXT bigWig fold change over control ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF606IOS, ENCFF910IKB, ENCFF978NVP 1883832948 ENCODE Processing Pipeline d0a1f005012675968adce9e5dd09b331 https://www.encodeproject.org/files/ENCFF113PXT/@@download/ENCFF113PXT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF506JUK bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF606IOS 6738279 ENCODE Processing Pipeline 25fef98854418601d3caea60929b46fd https://www.encodeproject.org/files/ENCFF506JUK/@@download/ENCFF506JUK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF284HJU bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF910IKB, ENCFF978NVP 6837990 ENCODE Processing Pipeline d390b2c14befc527a5dd53184016cd41 https://www.encodeproject.org/files/ENCFF284HJU/@@download/ENCFF284HJU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF631LDS bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF606IOS, ENCFF910IKB, ENCFF978NVP 7143064 ENCODE Processing Pipeline 8096a9f983d2b12fd5a980bd4e381c18 https://www.encodeproject.org/files/ENCFF631LDS/@@download/ENCFF631LDS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF451ESW bigBed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF284HJU 12668233 ENCODE Processing Pipeline 2e378b6450c1898b2e91e24d5d5865f8 https://www.encodeproject.org/files/ENCFF451ESW/@@download/ENCFF451ESW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF158DBE bigBed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF506JUK 13120238 ENCODE Processing Pipeline b8fad568eaba64effc5f4fd07999fff4 https://www.encodeproject.org/files/ENCFF158DBE/@@download/ENCFF158DBE.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF362ESR bigBed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF631LDS 12694324 ENCODE Processing Pipeline 8477771ede0b672c787738dc64902981 https://www.encodeproject.org/files/ENCFF362ESR/@@download/ENCFF362ESR.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF233MGP bed narrowPeak conservative idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF284HJU, ENCFF419RSJ, ENCFF506JUK, ENCFF631LDS 458989 ENCODE Processing Pipeline 49ffc29035e20db821e4e5b240c87134 https://www.encodeproject.org/files/ENCFF233MGP/@@download/ENCFF233MGP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF930PVO bigBed narrowPeak conservative idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF233MGP 905817 ENCODE Processing Pipeline 19f6e3405516eb087b8a0fc848117606 https://www.encodeproject.org/files/ENCFF930PVO/@@download/ENCFF930PVO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF752KNU bed narrowPeak optimal idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF284HJU, ENCFF419RSJ, ENCFF506JUK, ENCFF631LDS 512900 ENCODE Processing Pipeline c83d74e0214a815c337cb5a61b85bcd1 https://www.encodeproject.org/files/ENCFF752KNU/@@download/ENCFF752KNU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF157NHH bigBed narrowPeak optimal idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF752KNU 984582 ENCODE Processing Pipeline edf40e7e37fbce6c6ccc6152b0d27b62 https://www.encodeproject.org/files/ENCFF157NHH/@@download/ENCFF157NHH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF640CID bigBed narrowPeak conservative idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF211YKN 837206 ENCODE Processing Pipeline 46f65c6418951f0d0f12e741bd9d7d61 https://www.encodeproject.org/files/ENCFF640CID/@@download/ENCFF640CID.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF211YKN bed narrowPeak conservative idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF249GYD, ENCFF713DFK, ENCFF952KDF 407079 ENCODE Processing Pipeline b65839c1922ebaf71ca69b22aa855b63 https://www.encodeproject.org/files/ENCFF211YKN/@@download/ENCFF211YKN.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF083YCQ bed narrowPeak optimal idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF249GYD, ENCFF713DFK, ENCFF952KDF 454049 ENCODE Processing Pipeline 6f611b81e2e1ca4ecaa174c4c3617412 https://www.encodeproject.org/files/ENCFF083YCQ/@@download/ENCFF083YCQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF749TCC bigBed narrowPeak optimal idr thresholded peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF083YCQ 906604 ENCODE Processing Pipeline 0c4d09d07d5d56deb68fd880ed1aad75 https://www.encodeproject.org/files/ENCFF749TCC/@@download/ENCFF749TCC.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF447FBL fastq reads ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF953JKI 2124395730 Michael Snyder, Stanford 873f87c166f6e0971402a33a8da41b30 https://www.encodeproject.org/files/ENCFF447FBL/@@download/ENCFF447FBL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF953JKI fastq reads ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF447FBL 2297559189 Michael Snyder, Stanford 0bcaddea1498546f97b391f93eb81180 https://www.encodeproject.org/files/ENCFF953JKI/@@download/ENCFF953JKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF000NND bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NNM 634886012 Richard Myers, HAIB 3536a8d380cb292b78604e7a0cc81f6b https://www.encodeproject.org/files/ENCFF000NND/@@download/ENCFF000NND.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NNE bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NNN 767928855 Richard Myers, HAIB 1ca1d8a11bf0f8189e4e93b69c57603f https://www.encodeproject.org/files/ENCFF000NNE/@@download/ENCFF000NNE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NNG bigWig raw signal ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 1794847 Richard Myers, HAIB 09918c5994c271ac4b4cf3333ae36cfa https://www.encodeproject.org/files/ENCFF000NNG/@@download/ENCFF000NNG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NNI bigWig raw signal ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 11380084 Richard Myers, HAIB 46e2e1a9e7d63f589b93d9c986cb2a54 https://www.encodeproject.org/files/ENCFF000NNI/@@download/ENCFF000NNI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NNM fastq reads ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 824578556 Richard Myers, HAIB 087fd5d087a576d271e0c56a6a489675 https://www.encodeproject.org/files/ENCFF000NNM/@@download/ENCFF000NNM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NNN fastq reads ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1149407100 Richard Myers, HAIB 2f2d8f9b6b3a9c0455c7bee060da448f https://www.encodeproject.org/files/ENCFF000NNN/@@download/ENCFF000NNN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF321ZKP bam unfiltered alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNM, ENCFF807MUK 1058503508 ENCODE Processing Pipeline e755dace22f77989ca915a6c86f66500 https://www.encodeproject.org/files/ENCFF321ZKP/@@download/ENCFF321ZKP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF102JFM bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNM, ENCFF807MUK 591773368 ENCODE Processing Pipeline 082d838537191d4d1e387750c4315e1d https://www.encodeproject.org/files/ENCFF102JFM/@@download/ENCFF102JFM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF335PLH bam unfiltered alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNN, ENCFF807MUK 1392035901 ENCODE Processing Pipeline 7c4e0591cf901931b88a6f3009bbeacc https://www.encodeproject.org/files/ENCFF335PLH/@@download/ENCFF335PLH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF174UCM bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNN, ENCFF807MUK 556291517 ENCODE Processing Pipeline 51f67e120b1fc56ddb937a76a2b8ca78 https://www.encodeproject.org/files/ENCFF174UCM/@@download/ENCFF174UCM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF566HYM bam unfiltered alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNM, ENCFF643CGH 1062303677 ENCODE Processing Pipeline a4ff330dc81f51436af344d1ce5048da https://www.encodeproject.org/files/ENCFF566HYM/@@download/ENCFF566HYM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF298AEN bam unfiltered alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNN, ENCFF643CGH 1395731526 ENCODE Processing Pipeline 57f5f5ceb66ad20dbc30e2ede43d6cab https://www.encodeproject.org/files/ENCFF298AEN/@@download/ENCFF298AEN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF942JER bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNM, ENCFF643CGH 591404416 ENCODE Processing Pipeline a9c685372416fddf26c354053db3d295 https://www.encodeproject.org/files/ENCFF942JER/@@download/ENCFF942JER.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF428QRM bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNN, ENCFF643CGH 555873426 ENCODE Processing Pipeline a57dfb67c40acc7b2990e1f6952ebc40 https://www.encodeproject.org/files/ENCFF428QRM/@@download/ENCFF428QRM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF074YTR bigWig signal p-value ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF279XQE 397522041 ENCODE Processing Pipeline 3c8e61aa2035292dba0f22418b282e82 https://www.encodeproject.org/files/ENCFF074YTR/@@download/ENCFF074YTR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF896KEY bigWig fold change over control ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF174UCM, ENCFF279XQE 283553677 ENCODE Processing Pipeline e6fc352047ff699e53e452ed986316d7 https://www.encodeproject.org/files/ENCFF896KEY/@@download/ENCFF896KEY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF889YTC bigWig signal p-value ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF174UCM, ENCFF279XQE 458434134 ENCODE Processing Pipeline 8ac7afe610836572f34b72bae9b0717d https://www.encodeproject.org/files/ENCFF889YTC/@@download/ENCFF889YTC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF669JMJ bigWig signal p-value ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF102JFM, ENCFF174UCM, ENCFF279XQE 522293610 ENCODE Processing Pipeline 9c948c359fb6047469e349c0309b89c1 https://www.encodeproject.org/files/ENCFF669JMJ/@@download/ENCFF669JMJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF931GKJ bigWig fold change over control ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF279XQE 287381830 ENCODE Processing Pipeline 2d8c4d436c3bbd24dcf4668aed692283 https://www.encodeproject.org/files/ENCFF931GKJ/@@download/ENCFF931GKJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF775CUL bigWig fold change over control ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF102JFM, ENCFF174UCM, ENCFF279XQE 492943419 ENCODE Processing Pipeline c16499397b6cafc5f776d17f4f4aad01 https://www.encodeproject.org/files/ENCFF775CUL/@@download/ENCFF775CUL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF471HFA bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF279XQE 3936542 ENCODE Processing Pipeline 48ba54da133e20845e8b851440f51c27 https://www.encodeproject.org/files/ENCFF471HFA/@@download/ENCFF471HFA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF010JFS bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF174UCM, ENCFF279XQE 3817595 ENCODE Processing Pipeline d047b2eb22a8539fbf3fde04c865fb9b https://www.encodeproject.org/files/ENCFF010JFS/@@download/ENCFF010JFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF093PHA bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF102JFM, ENCFF174UCM, ENCFF279XQE 4497244 ENCODE Processing Pipeline d83ebb2f3d2da080bd5a1555371b2242 https://www.encodeproject.org/files/ENCFF093PHA/@@download/ENCFF093PHA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF533YAW bigBed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF471HFA 8548755 ENCODE Processing Pipeline 9ae76be12b0473d6ac11e0ac56b77b14 https://www.encodeproject.org/files/ENCFF533YAW/@@download/ENCFF533YAW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF821VRU bigBed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF010JFS 8266707 ENCODE Processing Pipeline d20c653f9bbd93a8447cf0e6ea29989d https://www.encodeproject.org/files/ENCFF821VRU/@@download/ENCFF821VRU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF071FRX bigBed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF093PHA 10992416 ENCODE Processing Pipeline f302422cf9e225d92af8d550461aedda https://www.encodeproject.org/files/ENCFF071FRX/@@download/ENCFF071FRX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF092AEQ bed narrowPeak conservative idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF010JFS, ENCFF093PHA, ENCFF471HFA 44953 ENCODE Processing Pipeline 499cf0de28c2d212d7beffacd66ec69b https://www.encodeproject.org/files/ENCFF092AEQ/@@download/ENCFF092AEQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF197OYO bigWig signal p-value ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF016HFH, ENCFF428QRM, ENCFF942JER 522976962 ENCODE Processing Pipeline 9dbab89e2de6c9e0bdf45bc96cfa2a23 https://www.encodeproject.org/files/ENCFF197OYO/@@download/ENCFF197OYO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF686MSC bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF016HFH, ENCFF428QRM, ENCFF942JER 4421486 ENCODE Processing Pipeline 2d3632990f00c484216d295f359908c5 https://www.encodeproject.org/files/ENCFF686MSC/@@download/ENCFF686MSC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF519BOO bed narrowPeak optimal idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF128IZX, ENCFF419RSJ, ENCFF510QJQ, ENCFF686MSC 53706 ENCODE Processing Pipeline 2fb7112b8e996a10273ec8d4c495d22f https://www.encodeproject.org/files/ENCFF519BOO/@@download/ENCFF519BOO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF932TIR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF092AEQ 136420 ENCODE Processing Pipeline 37c273bc756f727ef4da34c9c9541194 https://www.encodeproject.org/files/ENCFF932TIR/@@download/ENCFF932TIR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF678XAK bigWig fold change over control ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF016HFH, ENCFF428QRM 283537939 ENCODE Processing Pipeline 39e3cafdc25b8e5b9b124e94e8fafc70 https://www.encodeproject.org/files/ENCFF678XAK/@@download/ENCFF678XAK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF577EAZ bigWig fold change over control ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF016HFH, ENCFF428QRM, ENCFF942JER 491712764 ENCODE Processing Pipeline 365f65ecc7bc7916aeaee30bbecebf93 https://www.encodeproject.org/files/ENCFF577EAZ/@@download/ENCFF577EAZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF510QJQ bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF016HFH, ENCFF428QRM 3758228 ENCODE Processing Pipeline 854ef0074f1ba24a7520b6f76b4a33ee https://www.encodeproject.org/files/ENCFF510QJQ/@@download/ENCFF510QJQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF200LMD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF097XOQ 134689 ENCODE Processing Pipeline 955c3a5f94a4a8e8edff037baee86b87 https://www.encodeproject.org/files/ENCFF200LMD/@@download/ENCFF200LMD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF750JOB bed narrowPeak optimal idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF010JFS, ENCFF093PHA, ENCFF471HFA 59329 ENCODE Processing Pipeline be4b0fd390fa5e9646dcb71a49dd1488 https://www.encodeproject.org/files/ENCFF750JOB/@@download/ENCFF750JOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF667MOB bigWig fold change over control ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF016HFH, ENCFF942JER 284477265 ENCODE Processing Pipeline c004e7b061e7b02192f0c3b9358116f6 https://www.encodeproject.org/files/ENCFF667MOB/@@download/ENCFF667MOB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF128IZX bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF016HFH, ENCFF942JER 3829615 ENCODE Processing Pipeline 7cf93063d26e97afc3f1bd47e426d6ef https://www.encodeproject.org/files/ENCFF128IZX/@@download/ENCFF128IZX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF398TNU bigBed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF686MSC 10972096 ENCODE Processing Pipeline cee9529ae8fe74cf822653f3d8741db5 https://www.encodeproject.org/files/ENCFF398TNU/@@download/ENCFF398TNU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF140HEE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF519BOO 150077 ENCODE Processing Pipeline 35b2a77fb5066783a0a6ca302ab4a554 https://www.encodeproject.org/files/ENCFF140HEE/@@download/ENCFF140HEE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF323ITU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF750JOB 157626 ENCODE Processing Pipeline e3eaf7652086c31b05144d4630e9f25e https://www.encodeproject.org/files/ENCFF323ITU/@@download/ENCFF323ITU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF542ELY bigWig signal p-value ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF016HFH, ENCFF942JER 482278404 ENCODE Processing Pipeline 0366b7750a34783e6f09c45cf22a9c79 https://www.encodeproject.org/files/ENCFF542ELY/@@download/ENCFF542ELY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF931DOM bigWig signal p-value ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF016HFH, ENCFF428QRM 529810671 ENCODE Processing Pipeline 0426a5a5301dd022cc80ec729212888f https://www.encodeproject.org/files/ENCFF931DOM/@@download/ENCFF931DOM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF067REJ bigBed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF128IZX 8327733 ENCODE Processing Pipeline 801f2064e47c8ab5db75e900ccf5c2aa https://www.encodeproject.org/files/ENCFF067REJ/@@download/ENCFF067REJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF097XOQ bed narrowPeak conservative idr thresholded peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF128IZX, ENCFF419RSJ, ENCFF510QJQ, ENCFF686MSC 43198 ENCODE Processing Pipeline ef7645500210f5f6d37e0f2f225e7a04 https://www.encodeproject.org/files/ENCFF097XOQ/@@download/ENCFF097XOQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF307RGE bigBed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF510QJQ 8194074 ENCODE Processing Pipeline 56af181ac1c54d805adee3f19bddc007 https://www.encodeproject.org/files/ENCFF307RGE/@@download/ENCFF307RGE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF103QZC bam unfiltered alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF305ZJL, ENCFF807MUK 1053209265 ENCODE Processing Pipeline b6cf7e5974b5fd72373129b6b9af6c22 https://www.encodeproject.org/files/ENCFF103QZC/@@download/ENCFF103QZC.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF485VKV bam unfiltered alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF089FKI, ENCFF283JZA, ENCFF807MUK 2114935120 ENCODE Processing Pipeline 4e323633dc5279c4c708d5c83b14aff2 https://www.encodeproject.org/files/ENCFF485VKV/@@download/ENCFF485VKV.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF283JZA fastq reads ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 852326000 Kevin White, UChicago 1c226d995eb7fbc2685f4bc5ad013cbb SRA:SRR6212664 https://www.encodeproject.org/files/ENCFF283JZA/@@download/ENCFF283JZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF610IKU/ released control low read depth, low read depth, missing genetic modification characterization ENCFF305ZJL fastq reads ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 962819480 Kevin White, UChicago 2c9e8da5e67a9aa8705e758cda3699dd SRA:SRR6212663 https://www.encodeproject.org/files/ENCFF305ZJL/@@download/ENCFF305ZJL.fastq.gz Illumina HiSeq 2000 /files/ENCFF610IKU/ released control low read depth, low read depth, missing genetic modification characterization ENCFF089FKI fastq reads ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1119413676 Kevin White, UChicago 1e55ad8f327716076a1a7456591f2d0e SRA:SRR6212665 https://www.encodeproject.org/files/ENCFF089FKI/@@download/ENCFF089FKI.fastq.gz Illumina HiSeq 2500 /files/ENCFF610IKU/ released control low read depth, low read depth, missing genetic modification characterization ENCFF862PGC bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF305ZJL, ENCFF807MUK 797758164 ENCODE Processing Pipeline 730e57e0dd12b37196b89632e0b4ab8b https://www.encodeproject.org/files/ENCFF862PGC/@@download/ENCFF862PGC.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF768AST bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF089FKI, ENCFF283JZA, ENCFF807MUK 1572917829 ENCODE Processing Pipeline 76b87b1a132892bcd037de51e8cc3cc6 https://www.encodeproject.org/files/ENCFF768AST/@@download/ENCFF768AST.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF493WHZ bigWig signal p-value ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF513LAW, ENCFF862PGC 360209672 ENCODE Processing Pipeline c1b77d856dc2a0e7c2fcf7e46c65cc9d https://www.encodeproject.org/files/ENCFF493WHZ/@@download/ENCFF493WHZ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF090UUF bigWig fold change over control ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF513LAW, ENCFF768AST 632757138 ENCODE Processing Pipeline ee66d3296097d98571f6eef6b4e5703b https://www.encodeproject.org/files/ENCFF090UUF/@@download/ENCFF090UUF.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF660TFQ bigWig signal p-value ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF513LAW, ENCFF768AST 439972603 ENCODE Processing Pipeline 9bd7eccde7a5f0d1eb199c3bf552e927 https://www.encodeproject.org/files/ENCFF660TFQ/@@download/ENCFF660TFQ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF230XRJ bigWig signal p-value ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF513LAW, ENCFF768AST, ENCFF862PGC 426104119 ENCODE Processing Pipeline 238fb42fc2577e50ee0ae067a363185e https://www.encodeproject.org/files/ENCFF230XRJ/@@download/ENCFF230XRJ.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF641HMX bigWig fold change over control ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF513LAW, ENCFF862PGC 373742949 ENCODE Processing Pipeline aa31d5853088ce6dd2f744b867d58167 https://www.encodeproject.org/files/ENCFF641HMX/@@download/ENCFF641HMX.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF943DQA bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF513LAW, ENCFF862PGC 5600429 ENCODE Processing Pipeline a65d91c6b7d634fbc7c41b44caf5c752 https://www.encodeproject.org/files/ENCFF943DQA/@@download/ENCFF943DQA.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF976XOX bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF513LAW, ENCFF768AST 5924813 ENCODE Processing Pipeline f22dcb61a0016c56b736f22c2f872fa0 https://www.encodeproject.org/files/ENCFF976XOX/@@download/ENCFF976XOX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF414XXU bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF513LAW, ENCFF768AST, ENCFF862PGC 6353379 ENCODE Processing Pipeline 50077d0a2c3df468f79771b09cc283a0 https://www.encodeproject.org/files/ENCFF414XXU/@@download/ENCFF414XXU.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF951LTU bigWig fold change over control ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF513LAW, ENCFF768AST, ENCFF862PGC 828912736 ENCODE Processing Pipeline a93331155d88a42206556090744884af https://www.encodeproject.org/files/ENCFF951LTU/@@download/ENCFF951LTU.bigWig hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF940JMU bigBed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF943DQA 13201322 ENCODE Processing Pipeline 2432a920ce368522bb793614b2d7b93e https://www.encodeproject.org/files/ENCFF940JMU/@@download/ENCFF940JMU.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF920EAU bigBed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF976XOX 13092776 ENCODE Processing Pipeline ce99e835f996911c1c8a538cdbb316bb https://www.encodeproject.org/files/ENCFF920EAU/@@download/ENCFF920EAU.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF913CGD bigBed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF414XXU 13031564 ENCODE Processing Pipeline ef392572b1ff7385ece242fbbc6c98e8 https://www.encodeproject.org/files/ENCFF913CGD/@@download/ENCFF913CGD.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF021KDR bam unfiltered alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF305ZJL, ENCFF643CGH 1058051613 ENCODE Processing Pipeline 54b070a58f095b3d9a3157661d169093 https://www.encodeproject.org/files/ENCFF021KDR/@@download/ENCFF021KDR.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF499ZDK bam unfiltered alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF089FKI, ENCFF283JZA, ENCFF643CGH 2125513015 ENCODE Processing Pipeline d467ac4e3f78a0181c83ce66399e45af https://www.encodeproject.org/files/ENCFF499ZDK/@@download/ENCFF499ZDK.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF191KBY bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF305ZJL, ENCFF643CGH 797442901 ENCODE Processing Pipeline e83739cf741f7c44f5cdfc7964f078b0 https://www.encodeproject.org/files/ENCFF191KBY/@@download/ENCFF191KBY.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF519GHQ bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF089FKI, ENCFF283JZA, ENCFF643CGH 1572684629 ENCODE Processing Pipeline 5c87a0d9ab2bf70430b3ca5ad39ed9e1 https://www.encodeproject.org/files/ENCFF519GHQ/@@download/ENCFF519GHQ.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF195TGB bigBed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF983GGM 13047843 ENCODE Processing Pipeline a93cd2124258fb4fc6a88bcd879f9d52 https://www.encodeproject.org/files/ENCFF195TGB/@@download/ENCFF195TGB.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF465LIR bigWig signal p-value ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF191KBY, ENCFF604HFX 356134624 ENCODE Processing Pipeline 0dace4d71ca9e3258b9a0338a4e42f56 https://www.encodeproject.org/files/ENCFF465LIR/@@download/ENCFF465LIR.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF033HJF bigWig signal p-value ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF519GHQ, ENCFF604HFX 433688641 ENCODE Processing Pipeline 897953da6e87c0467051e7dbb9ae00f6 https://www.encodeproject.org/files/ENCFF033HJF/@@download/ENCFF033HJF.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF777NRD bigWig signal p-value ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF191KBY, ENCFF519GHQ, ENCFF604HFX 426719186 ENCODE Processing Pipeline f3ca3fae7dd1a8b13be56966d6f1d364 https://www.encodeproject.org/files/ENCFF777NRD/@@download/ENCFF777NRD.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF367UUW bigWig fold change over control ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF191KBY, ENCFF519GHQ, ENCFF604HFX 829715914 ENCODE Processing Pipeline 52b2f07547469c60935bee45e3d7ac19 https://www.encodeproject.org/files/ENCFF367UUW/@@download/ENCFF367UUW.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF578ZLA bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF519GHQ, ENCFF604HFX 5586620 ENCODE Processing Pipeline bf8baf6509c8eaccf9e0d608c7a781f3 https://www.encodeproject.org/files/ENCFF578ZLA/@@download/ENCFF578ZLA.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF012UEV bigBed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF578ZLA 13097767 ENCODE Processing Pipeline 23720a613fba489ae8260edab21f9f4f https://www.encodeproject.org/files/ENCFF012UEV/@@download/ENCFF012UEV.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF004WMI bigWig fold change over control ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF191KBY, ENCFF604HFX 394971958 ENCODE Processing Pipeline 05f209c57f27303a121b2b5649717956 https://www.encodeproject.org/files/ENCFF004WMI/@@download/ENCFF004WMI.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF978MKT bigWig fold change over control ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF519GHQ, ENCFF604HFX 615803413 ENCODE Processing Pipeline 93550e55d6ae4aa2d9a1a418eee74f37 https://www.encodeproject.org/files/ENCFF978MKT/@@download/ENCFF978MKT.bigWig GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF983GGM bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF191KBY, ENCFF519GHQ, ENCFF604HFX 6054108 ENCODE Processing Pipeline 6a9f7ac30f4bdf229e28c13c5141aa8f https://www.encodeproject.org/files/ENCFF983GGM/@@download/ENCFF983GGM.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF122BRO bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF191KBY, ENCFF604HFX 5226988 ENCODE Processing Pipeline b4cfa9a339c052ccca8874f3a2b7ec08 https://www.encodeproject.org/files/ENCFF122BRO/@@download/ENCFF122BRO.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF797EAS bigBed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF122BRO 13164445 ENCODE Processing Pipeline 702c6d141d3c48e9ff53dc787957a3a7 https://www.encodeproject.org/files/ENCFF797EAS/@@download/ENCFF797EAS.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF749HDT bigBed narrowPeak conservative idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF211CXT 214104 ENCODE Processing Pipeline a1db161b9d1c3d5c3b57e8527e28ff8e https://www.encodeproject.org/files/ENCFF749HDT/@@download/ENCFF749HDT.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF211CXT bed narrowPeak conservative idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF122BRO, ENCFF419RSJ, ENCFF578ZLA, ENCFF983GGM 69138 ENCODE Processing Pipeline 96f70bb8fac83085db3390f4f64e0230 https://www.encodeproject.org/files/ENCFF211CXT/@@download/ENCFF211CXT.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF620TOF bed narrowPeak optimal idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF122BRO, ENCFF419RSJ, ENCFF578ZLA, ENCFF983GGM 74650 ENCODE Processing Pipeline 8474c19e5de804d9ba4b9933260b6881 https://www.encodeproject.org/files/ENCFF620TOF/@@download/ENCFF620TOF.bed.gz GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF850CVV bigBed narrowPeak optimal idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF620TOF 224522 ENCODE Processing Pipeline 0cf954a51dabbaa407741c3da32da6c3 https://www.encodeproject.org/files/ENCFF850CVV/@@download/ENCFF850CVV.bigBed GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF139UKG bigBed narrowPeak conservative idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF992DKG 163706 ENCODE Processing Pipeline a820eb0321a80285b5f93e7df226677c https://www.encodeproject.org/files/ENCFF139UKG/@@download/ENCFF139UKG.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF575FVP bed narrowPeak optimal idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF414XXU, ENCFF943DQA, ENCFF976XOX 61728 ENCODE Processing Pipeline 1794332ea2b9cca10525aae42a792c68 https://www.encodeproject.org/files/ENCFF575FVP/@@download/ENCFF575FVP.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF992DKG bed narrowPeak conservative idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF414XXU, ENCFF943DQA, ENCFF976XOX 57290 ENCODE Processing Pipeline d9846b09721b9ddd605f349ff2d8181e https://www.encodeproject.org/files/ENCFF992DKG/@@download/ENCFF992DKG.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF756WKB bigBed narrowPeak optimal idr thresholded peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF575FVP 170694 ENCODE Processing Pipeline 28565e1ca038b5b7a3214a9a9475615e https://www.encodeproject.org/files/ENCFF756WKB/@@download/ENCFF756WKB.bigBed hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF816PUL bam unfiltered alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF829DHH, ENCFF937AKL 2003618788 ENCODE Processing Pipeline 0551a0b19c1f0ce8726135a2dfce8545 https://www.encodeproject.org/files/ENCFF816PUL/@@download/ENCFF816PUL.bam hg19 released missing genetic modification characterization ENCFF430RPU bam unfiltered alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF189KOF, ENCFF705GVK, ENCFF807MUK 1479397461 ENCODE Processing Pipeline d63acf5d5feea220d416d606be992a8e https://www.encodeproject.org/files/ENCFF430RPU/@@download/ENCFF430RPU.bam hg19 released missing genetic modification characterization ENCFF189KOF fastq reads ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 652923081 Kevin White, UChicago 9d9852901cd4e3593ae662d57d7a9e11 SRA:SRR6213648 https://www.encodeproject.org/files/ENCFF189KOF/@@download/ENCFF189KOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF437ZGA/, /files/ENCFF444LSU/ released missing genetic modification characterization ENCFF829DHH fastq reads ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 806140451 Kevin White, UChicago 539b6df6c242967a38de6903943116db SRA:SRR6213646 https://www.encodeproject.org/files/ENCFF829DHH/@@download/ENCFF829DHH.fastq.gz Illumina HiSeq 2000 /files/ENCFF437ZGA/, /files/ENCFF444LSU/ released missing genetic modification characterization ENCFF937AKL fastq reads ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 1017140520 Kevin White, UChicago 0eff07c589c355873d1f349967d0b7c9 SRA:SRR6213647 https://www.encodeproject.org/files/ENCFF937AKL/@@download/ENCFF937AKL.fastq.gz Illumina HiSeq 2500 /files/ENCFF437ZGA/, /files/ENCFF444LSU/ released missing genetic modification characterization ENCFF705GVK fastq reads ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 683346534 Kevin White, UChicago ad88d3d4d4b24b63f5d8b93cb0bff238 SRA:SRR6213649 https://www.encodeproject.org/files/ENCFF705GVK/@@download/ENCFF705GVK.fastq.gz Illumina HiSeq 2500 /files/ENCFF437ZGA/, /files/ENCFF444LSU/ released missing genetic modification characterization ENCFF708IMW bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF189KOF, ENCFF705GVK, ENCFF807MUK 1104510332 ENCODE Processing Pipeline 333e9bec291567977cc179022a3e4dd3 https://www.encodeproject.org/files/ENCFF708IMW/@@download/ENCFF708IMW.bam hg19 released missing genetic modification characterization ENCFF509LLL bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF829DHH, ENCFF937AKL 1511111931 ENCODE Processing Pipeline 47e27cafbda53762777d0604f6980cb5 https://www.encodeproject.org/files/ENCFF509LLL/@@download/ENCFF509LLL.bam hg19 released missing genetic modification characterization ENCFF558IFW bigWig signal p-value ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF275QSN, ENCFF509LLL 970418687 ENCODE Processing Pipeline 8144ad80beb55a25c3cf892589956b01 https://www.encodeproject.org/files/ENCFF558IFW/@@download/ENCFF558IFW.bigWig hg19 released missing genetic modification characterization ENCFF677EFH bigWig fold change over control ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF275QSN, ENCFF509LLL 882652650 ENCODE Processing Pipeline 19e8083969e1209b5cff5465bbed9f7e https://www.encodeproject.org/files/ENCFF677EFH/@@download/ENCFF677EFH.bigWig hg19 released missing genetic modification characterization ENCFF143VRD bigWig fold change over control ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF275QSN, ENCFF509LLL, ENCFF708IMW 1192823179 ENCODE Processing Pipeline d59e370a1a43600593ffe438a01b08c5 https://www.encodeproject.org/files/ENCFF143VRD/@@download/ENCFF143VRD.bigWig hg19 released missing genetic modification characterization ENCFF119EQJ bigBed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF270GEP 13317360 ENCODE Processing Pipeline 6a0f483b12c70d5f995f19166a62ccf7 https://www.encodeproject.org/files/ENCFF119EQJ/@@download/ENCFF119EQJ.bigBed hg19 released missing genetic modification characterization ENCFF149PNK bigWig signal p-value ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF275QSN, ENCFF708IMW 738979742 ENCODE Processing Pipeline 1876438d290c54caff1381d07db3dfe3 https://www.encodeproject.org/files/ENCFF149PNK/@@download/ENCFF149PNK.bigWig hg19 released missing genetic modification characterization ENCFF270GEP bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF275QSN, ENCFF509LLL 6502238 ENCODE Processing Pipeline 1b0d77e557090a061c18c37c34f975a4 https://www.encodeproject.org/files/ENCFF270GEP/@@download/ENCFF270GEP.bed.gz hg19 released missing genetic modification characterization ENCFF269IWY bigBed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF274KQN 13257474 ENCODE Processing Pipeline f0756d4415fc07d4738b298b2c221495 https://www.encodeproject.org/files/ENCFF269IWY/@@download/ENCFF269IWY.bigBed hg19 released missing genetic modification characterization ENCFF712NQY bigWig signal p-value ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF275QSN, ENCFF509LLL, ENCFF708IMW 1193755884 ENCODE Processing Pipeline 94fad4aeeb0e008cc58d2e6cc48683c6 https://www.encodeproject.org/files/ENCFF712NQY/@@download/ENCFF712NQY.bigWig hg19 released missing genetic modification characterization ENCFF920AEL bigWig fold change over control ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF275QSN, ENCFF708IMW 592746562 ENCODE Processing Pipeline 1076360670516bea3f729a9d9e21706c https://www.encodeproject.org/files/ENCFF920AEL/@@download/ENCFF920AEL.bigWig hg19 released missing genetic modification characterization ENCFF274KQN bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF275QSN, ENCFF708IMW 6425003 ENCODE Processing Pipeline 134bd6befc0c6c86a15c1fa9a116b1ca https://www.encodeproject.org/files/ENCFF274KQN/@@download/ENCFF274KQN.bed.gz hg19 released missing genetic modification characterization ENCFF370CWB bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF275QSN, ENCFF509LLL, ENCFF708IMW 7155951 ENCODE Processing Pipeline dac99fe766c738b037eff8ac48c3e632 https://www.encodeproject.org/files/ENCFF370CWB/@@download/ENCFF370CWB.bed.gz hg19 released missing genetic modification characterization ENCFF418HPP bigBed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF370CWB 13341416 ENCODE Processing Pipeline bc34155766af8566cdf2a2ddfa5860f3 https://www.encodeproject.org/files/ENCFF418HPP/@@download/ENCFF418HPP.bigBed hg19 released missing genetic modification characterization ENCFF536TIM bam unfiltered alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF829DHH, ENCFF937AKL 2013888098 ENCODE Processing Pipeline 7ebb44b978e727b9b4e51c9fb5e0a71a https://www.encodeproject.org/files/ENCFF536TIM/@@download/ENCFF536TIM.bam GRCh38 released missing genetic modification characterization ENCFF602NEB bam unfiltered alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF189KOF, ENCFF643CGH, ENCFF705GVK 1486635115 ENCODE Processing Pipeline f58125a549b510a424c1e034d7dd082c https://www.encodeproject.org/files/ENCFF602NEB/@@download/ENCFF602NEB.bam GRCh38 released missing genetic modification characterization ENCFF229CPP bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF829DHH, ENCFF937AKL 1510757725 ENCODE Processing Pipeline 34e391fd4b5510a57df1811e99f768bb https://www.encodeproject.org/files/ENCFF229CPP/@@download/ENCFF229CPP.bam GRCh38 released missing genetic modification characterization ENCFF857SEI bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF189KOF, ENCFF643CGH, ENCFF705GVK 1104102087 ENCODE Processing Pipeline bc121b385b8db6f691c71d1e94d16a45 https://www.encodeproject.org/files/ENCFF857SEI/@@download/ENCFF857SEI.bam GRCh38 released missing genetic modification characterization ENCFF711OML bigWig signal p-value ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF163QIC, ENCFF857SEI 794438622 ENCODE Processing Pipeline bd0b885179dd49c235590e8483c5107e https://www.encodeproject.org/files/ENCFF711OML/@@download/ENCFF711OML.bigWig GRCh38 released missing genetic modification characterization ENCFF359IIH bigWig signal p-value ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF163QIC, ENCFF229CPP, ENCFF857SEI 1199520708 ENCODE Processing Pipeline 823ab62ef80ee0c0bee322d1b93e2522 https://www.encodeproject.org/files/ENCFF359IIH/@@download/ENCFF359IIH.bigWig GRCh38 released missing genetic modification characterization ENCFF758SGU bigWig signal p-value ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF163QIC, ENCFF229CPP 893706732 ENCODE Processing Pipeline cfef8bbcdfcc19750bde91b96f6c78af https://www.encodeproject.org/files/ENCFF758SGU/@@download/ENCFF758SGU.bigWig GRCh38 released missing genetic modification characterization ENCFF481XQM bigWig fold change over control ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF163QIC, ENCFF229CPP 882502171 ENCODE Processing Pipeline d3e2e4c121d6280fc7acdce9493baa6b https://www.encodeproject.org/files/ENCFF481XQM/@@download/ENCFF481XQM.bigWig GRCh38 released missing genetic modification characterization ENCFF336WKN bigWig fold change over control ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF163QIC, ENCFF857SEI 730665735 ENCODE Processing Pipeline 2d75c763e81c6fec46e8fdfcb0dfd38a https://www.encodeproject.org/files/ENCFF336WKN/@@download/ENCFF336WKN.bigWig GRCh38 released missing genetic modification characterization ENCFF457RHX bigWig fold change over control ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF163QIC, ENCFF229CPP, ENCFF857SEI 1190533797 ENCODE Processing Pipeline a201c3af28a1b96fc8350e19b68e0e7d https://www.encodeproject.org/files/ENCFF457RHX/@@download/ENCFF457RHX.bigWig GRCh38 released missing genetic modification characterization ENCFF216JBG bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF163QIC, ENCFF857SEI 6134188 ENCODE Processing Pipeline bcade735d0b19ae8558d25bda5c6e762 https://www.encodeproject.org/files/ENCFF216JBG/@@download/ENCFF216JBG.bed.gz GRCh38 released missing genetic modification characterization ENCFF325RBD bigBed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF216JBG 13284705 ENCODE Processing Pipeline 395104857d68942cab892c84412a4006 https://www.encodeproject.org/files/ENCFF325RBD/@@download/ENCFF325RBD.bigBed GRCh38 released missing genetic modification characterization ENCFF291HNY bigBed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF050LSW 13317971 ENCODE Processing Pipeline 67e7995297afb19a5a8b98b37229a456 https://www.encodeproject.org/files/ENCFF291HNY/@@download/ENCFF291HNY.bigBed GRCh38 released missing genetic modification characterization ENCFF815SWZ bigBed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF031NWJ 13378853 ENCODE Processing Pipeline a291682a8905c8d639a5f6962259e4cb https://www.encodeproject.org/files/ENCFF815SWZ/@@download/ENCFF815SWZ.bigBed GRCh38 released missing genetic modification characterization ENCFF824JOH bed narrowPeak optimal idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF031NWJ, ENCFF050LSW, ENCFF216JBG, ENCFF419RSJ 79407 ENCODE Processing Pipeline 3dd1a698a13c2d4bed27374daf71f1d4 https://www.encodeproject.org/files/ENCFF824JOH/@@download/ENCFF824JOH.bed.gz GRCh38 released missing genetic modification characterization ENCFF031NWJ bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF163QIC, ENCFF229CPP, ENCFF857SEI 7007517 ENCODE Processing Pipeline 200e44208ea072de3079cc594b15ad8e https://www.encodeproject.org/files/ENCFF031NWJ/@@download/ENCFF031NWJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF050LSW bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF163QIC, ENCFF229CPP 6287396 ENCODE Processing Pipeline 067732b7f67ef5e4a0792e5ba8bae964 https://www.encodeproject.org/files/ENCFF050LSW/@@download/ENCFF050LSW.bed.gz GRCh38 released missing genetic modification characterization ENCFF950ISD bed narrowPeak conservative idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF031NWJ, ENCFF050LSW, ENCFF216JBG, ENCFF419RSJ 76620 ENCODE Processing Pipeline 80163606075fc278a9da89dcdffbb290 https://www.encodeproject.org/files/ENCFF950ISD/@@download/ENCFF950ISD.bed.gz GRCh38 released missing genetic modification characterization ENCFF409HYM bigBed narrowPeak optimal idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF824JOH 201126 ENCODE Processing Pipeline 03c5208ce91f5ba31d59a62498980aff https://www.encodeproject.org/files/ENCFF409HYM/@@download/ENCFF409HYM.bigBed GRCh38 released missing genetic modification characterization ENCFF562STM bigBed narrowPeak conservative idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF950ISD 196203 ENCODE Processing Pipeline 6bcff75fbe71ae7ec4b18e251c26197b https://www.encodeproject.org/files/ENCFF562STM/@@download/ENCFF562STM.bigBed GRCh38 released missing genetic modification characterization ENCFF047JIU bed narrowPeak conservative idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF270GEP, ENCFF274KQN, ENCFF370CWB 64047 ENCODE Processing Pipeline 2954f3809f712523182cae4643215bca https://www.encodeproject.org/files/ENCFF047JIU/@@download/ENCFF047JIU.bed.gz hg19 released missing genetic modification characterization ENCFF581SBI bigBed narrowPeak optimal idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF057EIS 148204 ENCODE Processing Pipeline 1e4b4e57520d56f816488012675cecab https://www.encodeproject.org/files/ENCFF581SBI/@@download/ENCFF581SBI.bigBed hg19 released missing genetic modification characterization ENCFF312SEB bigBed narrowPeak conservative idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF047JIU 147049 ENCODE Processing Pipeline 7b99e97f5926bcdfd765be6dc5662baf https://www.encodeproject.org/files/ENCFF312SEB/@@download/ENCFF312SEB.bigBed hg19 released missing genetic modification characterization ENCFF057EIS bed narrowPeak optimal idr thresholded peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF270GEP, ENCFF274KQN, ENCFF370CWB 64787 ENCODE Processing Pipeline e08e1fcedfca858311582a55a685cbc9 https://www.encodeproject.org/files/ENCFF057EIS/@@download/ENCFF057EIS.bed.gz hg19 released missing genetic modification characterization ENCFF315AUP bam unfiltered alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF730DID, ENCFF807MUK, ENCFF907WUT 5172771042 ENCODE Processing Pipeline 491c510bfba5c44fc8232be59d1c5720 https://www.encodeproject.org/files/ENCFF315AUP/@@download/ENCFF315AUP.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF196PEZ bam unfiltered alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF399SYU, ENCFF560UZF, ENCFF807MUK 4970206156 ENCODE Processing Pipeline 1a9375c7b2121ff93855d6f15c073b6c https://www.encodeproject.org/files/ENCFF196PEZ/@@download/ENCFF196PEZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF399SYU fastq reads ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF560UZF 2414414005 Michael Snyder, Stanford 71e67dee6c4cced8dc847377a8cf8e9f https://www.encodeproject.org/files/ENCFF399SYU/@@download/ENCFF399SYU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF560UZF fastq reads ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF399SYU 2328512787 Michael Snyder, Stanford 874b91955b5d29379da5562177754774 https://www.encodeproject.org/files/ENCFF560UZF/@@download/ENCFF560UZF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF907WUT fastq reads ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF730DID 2403440501 Michael Snyder, Stanford be1aeea0395a97831a822b3cf9c5922f https://www.encodeproject.org/files/ENCFF907WUT/@@download/ENCFF907WUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF730DID fastq reads ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF907WUT 2513644974 Michael Snyder, Stanford f1060768a511c7b9bf05dd19b7ab16d6 https://www.encodeproject.org/files/ENCFF730DID/@@download/ENCFF730DID.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF875UQI bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF730DID, ENCFF807MUK, ENCFF907WUT 3522040864 ENCODE Processing Pipeline 1312fdcb151c4c02d72b8ed14d2303cb https://www.encodeproject.org/files/ENCFF875UQI/@@download/ENCFF875UQI.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF901AKT bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF399SYU, ENCFF560UZF, ENCFF807MUK 3394920920 ENCODE Processing Pipeline 549c06c2712bbb06b9b23c388bf82305 https://www.encodeproject.org/files/ENCFF901AKT/@@download/ENCFF901AKT.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF619OWC bigWig signal p-value ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF901AKT 956136611 ENCODE Processing Pipeline 24f9a44a76a12b07eeeea411a95105fe https://www.encodeproject.org/files/ENCFF619OWC/@@download/ENCFF619OWC.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF253KSO bigWig signal p-value ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF875UQI 1059193381 ENCODE Processing Pipeline 64710733e797a4f6e63f071dd8d6b8ae https://www.encodeproject.org/files/ENCFF253KSO/@@download/ENCFF253KSO.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF550NRP bigWig signal p-value ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF875UQI, ENCFF901AKT 1926659358 ENCODE Processing Pipeline 15c56627eb70772b16ab293958588fab https://www.encodeproject.org/files/ENCFF550NRP/@@download/ENCFF550NRP.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF010QOB bigWig fold change over control ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF901AKT 1054843279 ENCODE Processing Pipeline a75ba17ec937b99ed231ddb20b7d844a https://www.encodeproject.org/files/ENCFF010QOB/@@download/ENCFF010QOB.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF680JFI bigWig fold change over control ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF875UQI 1040900075 ENCODE Processing Pipeline dd2299aad1ecdb1dde9f39a30f16c207 https://www.encodeproject.org/files/ENCFF680JFI/@@download/ENCFF680JFI.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF876JSE bigWig fold change over control ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF875UQI, ENCFF901AKT 1973676776 ENCODE Processing Pipeline 430be263bc37526544471f80f9bd1c82 https://www.encodeproject.org/files/ENCFF876JSE/@@download/ENCFF876JSE.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF900BSR bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF901AKT 6741528 ENCODE Processing Pipeline 58128ad5ec746ec21a387510fb287e67 https://www.encodeproject.org/files/ENCFF900BSR/@@download/ENCFF900BSR.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF904VPX bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF875UQI, ENCFF901AKT 7227830 ENCODE Processing Pipeline 44322f9f6d4443ab81f6a7cf06b7443b https://www.encodeproject.org/files/ENCFF904VPX/@@download/ENCFF904VPX.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF017TYA bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF875UQI 6781599 ENCODE Processing Pipeline 407ee578b0bb09c7021d00bb1deb39b3 https://www.encodeproject.org/files/ENCFF017TYA/@@download/ENCFF017TYA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF921TZS bigBed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF904VPX 13026634 ENCODE Processing Pipeline ebe2cb65843edb0e803bfb0fac59eeb0 https://www.encodeproject.org/files/ENCFF921TZS/@@download/ENCFF921TZS.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF633BIT bigBed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF900BSR 13278952 ENCODE Processing Pipeline 2104c6e874fc551646b528e477f37878 https://www.encodeproject.org/files/ENCFF633BIT/@@download/ENCFF633BIT.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF349NJS bigBed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF017TYA 13160895 ENCODE Processing Pipeline 30eb164708700a03bf3991cd0ff923ab https://www.encodeproject.org/files/ENCFF349NJS/@@download/ENCFF349NJS.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF558JEK bam unfiltered alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF730DID, ENCFF907WUT 5172698893 ENCODE Processing Pipeline 5fe0b62de72b54626324e12b36fe92ec https://www.encodeproject.org/files/ENCFF558JEK/@@download/ENCFF558JEK.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF905LTM bam unfiltered alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF399SYU, ENCFF560UZF, ENCFF643CGH 4970272109 ENCODE Processing Pipeline c42185b82fdd23b31f08003136866812 https://www.encodeproject.org/files/ENCFF905LTM/@@download/ENCFF905LTM.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF681JLI bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF730DID, ENCFF907WUT 3524857162 ENCODE Processing Pipeline 5f9eea0b7f045370b7a0d5a6e4afb60b https://www.encodeproject.org/files/ENCFF681JLI/@@download/ENCFF681JLI.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF897GZC bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF399SYU, ENCFF560UZF, ENCFF643CGH 3396784223 ENCODE Processing Pipeline 5ebbc02ac8317ee2d1ced8e7a92f3cfb https://www.encodeproject.org/files/ENCFF897GZC/@@download/ENCFF897GZC.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF401CKU bigWig signal p-value ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF897GZC, ENCFF910IKB 1014617979 ENCODE Processing Pipeline 9dd3a3c899c057ccb4ea703b0734749b https://www.encodeproject.org/files/ENCFF401CKU/@@download/ENCFF401CKU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF743EIJ bigWig signal p-value ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF681JLI 1066019238 ENCODE Processing Pipeline 57c9417dc9dbf9780907dab9360ea469 https://www.encodeproject.org/files/ENCFF743EIJ/@@download/ENCFF743EIJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF504DZL bigWig signal p-value ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF681JLI, ENCFF897GZC, ENCFF910IKB 1589196903 ENCODE Processing Pipeline 70c1d2e7b33a09aeea8bd0e03519990d https://www.encodeproject.org/files/ENCFF504DZL/@@download/ENCFF504DZL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF843GVQ bigWig fold change over control ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF897GZC, ENCFF910IKB 1064081317 ENCODE Processing Pipeline c86eae51373874e418b08916d4fe84a7 https://www.encodeproject.org/files/ENCFF843GVQ/@@download/ENCFF843GVQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF303TME bigWig fold change over control ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF681JLI 1039441344 ENCODE Processing Pipeline 99a62a9b53b9706099793f79725fea94 https://www.encodeproject.org/files/ENCFF303TME/@@download/ENCFF303TME.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF468WLM bigWig fold change over control ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF681JLI, ENCFF897GZC, ENCFF910IKB 1960757959 ENCODE Processing Pipeline e3c1ebf894fd642c03cf2469aa0487b4 https://www.encodeproject.org/files/ENCFF468WLM/@@download/ENCFF468WLM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF721MEV bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF897GZC, ENCFF910IKB 6579077 ENCODE Processing Pipeline bdf2afebe4d760d8dd477b07efa746c4 https://www.encodeproject.org/files/ENCFF721MEV/@@download/ENCFF721MEV.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF345WGJ bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF681JLI 6624056 ENCODE Processing Pipeline 66b0f8373c0478b999d3c9bf0f3ad02d https://www.encodeproject.org/files/ENCFF345WGJ/@@download/ENCFF345WGJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF743HZW bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF681JLI, ENCFF897GZC, ENCFF910IKB 7185552 ENCODE Processing Pipeline 6b73a9c2e87c9ffe712b5db9e8f0f181 https://www.encodeproject.org/files/ENCFF743HZW/@@download/ENCFF743HZW.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF795FFU bigBed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF345WGJ 13124847 ENCODE Processing Pipeline ad17aca022c4cff86b8929b12ee48bc7 https://www.encodeproject.org/files/ENCFF795FFU/@@download/ENCFF795FFU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF270UNZ bigBed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF721MEV 13239447 ENCODE Processing Pipeline cc2247ec10be92b34d721973454619c1 https://www.encodeproject.org/files/ENCFF270UNZ/@@download/ENCFF270UNZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF724SSF bigBed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF743HZW 12988606 ENCODE Processing Pipeline b1d1157e9c29ef4154e32729123e5fa2 https://www.encodeproject.org/files/ENCFF724SSF/@@download/ENCFF724SSF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF852MFA bed narrowPeak conservative idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF345WGJ, ENCFF419RSJ, ENCFF721MEV, ENCFF743HZW 290117 ENCODE Processing Pipeline d3aa65070ed1dc10cad932dae28c931c https://www.encodeproject.org/files/ENCFF852MFA/@@download/ENCFF852MFA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF474QDS bed narrowPeak optimal idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF345WGJ, ENCFF419RSJ, ENCFF721MEV, ENCFF743HZW 412523 ENCODE Processing Pipeline 8a46781063384c72279f3b61d09cf95d https://www.encodeproject.org/files/ENCFF474QDS/@@download/ENCFF474QDS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF542HTF bigBed narrowPeak conservative idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF852MFA 636611 ENCODE Processing Pipeline 88199cddac229181a6e7b50027601e1c https://www.encodeproject.org/files/ENCFF542HTF/@@download/ENCFF542HTF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF358PCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF474QDS 833043 ENCODE Processing Pipeline 4fd17387b03686383d3711205f3eb10a https://www.encodeproject.org/files/ENCFF358PCQ/@@download/ENCFF358PCQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF774BFB bigBed narrowPeak conservative idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF271LVS 466008 ENCODE Processing Pipeline 1d6b669b9bfea1b13ec5a62f33b8e1a8 https://www.encodeproject.org/files/ENCFF774BFB/@@download/ENCFF774BFB.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF271LVS bed narrowPeak conservative idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF017TYA, ENCFF900BSR, ENCFF904VPX 249210 ENCODE Processing Pipeline 35dd92df5e311abb582f2df352e544cc https://www.encodeproject.org/files/ENCFF271LVS/@@download/ENCFF271LVS.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF073LXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF297JZQ 613805 ENCODE Processing Pipeline 0be9e53817abdb74482155faf4823160 https://www.encodeproject.org/files/ENCFF073LXQ/@@download/ENCFF073LXQ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF297JZQ bed narrowPeak optimal idr thresholded peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF017TYA, ENCFF900BSR, ENCFF904VPX 366322 ENCODE Processing Pipeline d78ea51f6aa867de601e3cf900656fb7 https://www.encodeproject.org/files/ENCFF297JZQ/@@download/ENCFF297JZQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF000WFF bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WFP 340487535 Michael Snyder, Stanford 56b23e8d99bb713a4cbb6ac350d24b05 https://www.encodeproject.org/files/ENCFF000WFF/@@download/ENCFF000WFF.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFG bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WFQ 379234249 Michael Snyder, Stanford a0f078b0a9c12b111f20bf033489508d https://www.encodeproject.org/files/ENCFF000WFG/@@download/ENCFF000WFG.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFH bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFO 1577946 Michael Snyder, Stanford f309dbd54c17cc5ec9ca16785c3a7daf https://www.encodeproject.org/files/ENCFF000WFH/@@download/ENCFF000WFH.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFI bigWig signal ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 415513501 Michael Snyder, Stanford ba04f4be1ed41f7b194fd2ddc67f3148 https://www.encodeproject.org/files/ENCFF000WFI/@@download/ENCFF000WFI.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WFP fastq reads ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1086585492 Michael Snyder, Stanford 8d3906f4589d38589972cb33d7ed0abc https://www.encodeproject.org/files/ENCFF000WFP/@@download/ENCFF000WFP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFQ fastq reads ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 971472556 Michael Snyder, Stanford 95503899da3b159099d0de8566e3d027 https://www.encodeproject.org/files/ENCFF000WFQ/@@download/ENCFF000WFQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VFO bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 611449 Michael Snyder, Stanford 923cf1f45e7cae25ebfc6c93147e9718 https://www.encodeproject.org/files/ENCFF001VFO/@@download/ENCFF001VFO.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CPR bed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 380865 ENCODE Consortium Analysis Working Group 76fd4d8cc7d5952f67c615f60a14afda https://www.encodeproject.org/files/ENCFF002CPR/@@download/ENCFF002CPR.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF695KXC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPR 951553 ENCODE Consortium 79faf1be309bfef1fa7373d5e6ff605a https://www.encodeproject.org/files/ENCFF695KXC/@@download/ENCFF695KXC.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620DDS bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF643CGH 1032641340 ENCODE Processing Pipeline 9f1080dd5ae72b5f2406114eb63204a3 https://www.encodeproject.org/files/ENCFF620DDS/@@download/ENCFF620DDS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF336RFB bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF643CGH 1122686220 ENCODE Processing Pipeline 39b5bcfa3e462fecd090b6eeb12971c0 https://www.encodeproject.org/files/ENCFF336RFB/@@download/ENCFF336RFB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF987AWV bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF643CGH 598478181 ENCODE Processing Pipeline 80ef58f0340a09b52d379e67844dba27 https://www.encodeproject.org/files/ENCFF987AWV/@@download/ENCFF987AWV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF910NHM bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF643CGH 613920078 ENCODE Processing Pipeline 7b9f20635061509c606876f023a38641 https://www.encodeproject.org/files/ENCFF910NHM/@@download/ENCFF910NHM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF641CUP bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF807MUK 1118316133 ENCODE Processing Pipeline 47f13886d2bd5c3b43efd695a502dbb7 https://www.encodeproject.org/files/ENCFF641CUP/@@download/ENCFF641CUP.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF096FSP bam unfiltered alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF807MUK 1028428889 ENCODE Processing Pipeline 8526d6a4f5243db38ba1c0c8f44973da https://www.encodeproject.org/files/ENCFF096FSP/@@download/ENCFF096FSP.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF532CDZ bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF807MUK 613824617 ENCODE Processing Pipeline 70db697e3f270019cf5551d36f8aee85 https://www.encodeproject.org/files/ENCFF532CDZ/@@download/ENCFF532CDZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498BXQ bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF807MUK 598054346 ENCODE Processing Pipeline bb56840a7baa1cd0fa790a0db697fc35 https://www.encodeproject.org/files/ENCFF498BXQ/@@download/ENCFF498BXQ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF776GMP bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 243846040 ENCODE Processing Pipeline 6ecb51d23a5ea62ccb12b0606cb776c8 https://www.encodeproject.org/files/ENCFF776GMP/@@download/ENCFF776GMP.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228HAQ bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 77341993 ENCODE Processing Pipeline 247c57d253885c0bdfa33b112e27fe8e https://www.encodeproject.org/files/ENCFF228HAQ/@@download/ENCFF228HAQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595HYD bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF498BXQ, ENCFF532CDZ, ENCFF545DZO 429901485 ENCODE Processing Pipeline e8f80ebd0dd5f734073828cfa271a048 https://www.encodeproject.org/files/ENCFF595HYD/@@download/ENCFF595HYD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF054TZW bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 4520409 ENCODE Processing Pipeline def22d49fd1bea246ad3a6729ac518c9 https://www.encodeproject.org/files/ENCFF054TZW/@@download/ENCFF054TZW.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF052EPC bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF498BXQ, ENCFF532CDZ, ENCFF545DZO 5023109 ENCODE Processing Pipeline b9c2c60b5102aa2ea49ebbe298371e70 https://www.encodeproject.org/files/ENCFF052EPC/@@download/ENCFF052EPC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF875GEQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF327NLV 594144 ENCODE Processing Pipeline 758c29930cbc8310ebab56e033aefb8d https://www.encodeproject.org/files/ENCFF875GEQ/@@download/ENCFF875GEQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF490VYC bed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF052EPC, ENCFF054TZW, ENCFF113YPN 360409 ENCODE Processing Pipeline 83b95b0b1fe7e2d9274f754390afa39e https://www.encodeproject.org/files/ENCFF490VYC/@@download/ENCFF490VYC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF457FYU bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF498BXQ, ENCFF532CDZ, ENCFF545DZO 165378623 ENCODE Processing Pipeline 6696324367fc075d797351d94805d5de https://www.encodeproject.org/files/ENCFF457FYU/@@download/ENCFF457FYU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF113YPN bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 4140241 ENCODE Processing Pipeline 0a19fc910c0bb468dd11d35c927acbc9 https://www.encodeproject.org/files/ENCFF113YPN/@@download/ENCFF113YPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF743BZR bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF052EPC 13068265 ENCODE Processing Pipeline e68aa414cd39054955a31acfcfb55852 https://www.encodeproject.org/files/ENCFF743BZR/@@download/ENCFF743BZR.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF374HNZ bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 171824047 ENCODE Processing Pipeline 24406d9b24275874fd1906adc715d026 https://www.encodeproject.org/files/ENCFF374HNZ/@@download/ENCFF374HNZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF273WAS bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 204139054 ENCODE Processing Pipeline f384e06e436aceae5fe336d7970c82ad https://www.encodeproject.org/files/ENCFF273WAS/@@download/ENCFF273WAS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282ODT bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF054TZW 10284783 ENCODE Processing Pipeline 36fa022622c6de7ff12ddfbfeab239b8 https://www.encodeproject.org/files/ENCFF282ODT/@@download/ENCFF282ODT.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF157IRI bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113YPN 10010252 ENCODE Processing Pipeline e04d1fa923bfa64163657e661dba1f92 https://www.encodeproject.org/files/ENCFF157IRI/@@download/ENCFF157IRI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF327NLV bed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF052EPC, ENCFF054TZW, ENCFF113YPN 280153 ENCODE Processing Pipeline 4359d75c821f817cf46ca0072a0c669a https://www.encodeproject.org/files/ENCFF327NLV/@@download/ENCFF327NLV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF114FIS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF490VYC 722781 ENCODE Processing Pipeline 512880ed832e4673f7e261d5bcb72bf6 https://www.encodeproject.org/files/ENCFF114FIS/@@download/ENCFF114FIS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF554YCY bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF910NHM, ENCFF987AWV 430374803 ENCODE Processing Pipeline a79d2d46dd07dcfb890a02d2cd3b4d14 https://www.encodeproject.org/files/ENCFF554YCY/@@download/ENCFF554YCY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF343WTN bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF987AWV 244155033 ENCODE Processing Pipeline 820fe8b03a6b84c8ea28dd55180379b6 https://www.encodeproject.org/files/ENCFF343WTN/@@download/ENCFF343WTN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF407UYH bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF910NHM, ENCFF987AWV 5046651 ENCODE Processing Pipeline 8e845f41188619066c4ecb9d7cab8c95 https://www.encodeproject.org/files/ENCFF407UYH/@@download/ENCFF407UYH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611SGJ bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF407UYH 13095995 ENCODE Processing Pipeline abfd6028545f949eb99d69d9ff82799d https://www.encodeproject.org/files/ENCFF611SGJ/@@download/ENCFF611SGJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF571FGG bed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF285WOP, ENCFF348ICN, ENCFF407UYH, ENCFF419RSJ 287621 ENCODE Processing Pipeline d64276ed1d39af2107a9d0dd22cadda1 https://www.encodeproject.org/files/ENCFF571FGG/@@download/ENCFF571FGG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF971BRF bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF285WOP 10297645 ENCODE Processing Pipeline b3a41ec3d09347417621b5319ed012d2 https://www.encodeproject.org/files/ENCFF971BRF/@@download/ENCFF971BRF.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF896UZB bed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF285WOP, ENCFF348ICN, ENCFF407UYH, ENCFF419RSJ 370287 ENCODE Processing Pipeline 912cd305de68c2dc64c0e0e29b097a0d https://www.encodeproject.org/files/ENCFF896UZB/@@download/ENCFF896UZB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF571NAX bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF987AWV 171880092 ENCODE Processing Pipeline 83f70e77a2d2431ac233ddee7fdcb144 https://www.encodeproject.org/files/ENCFF571NAX/@@download/ENCFF571NAX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285WOP bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF987AWV 4534744 ENCODE Processing Pipeline 127396f8704d0435a0c4487efb66f2c9 https://www.encodeproject.org/files/ENCFF285WOP/@@download/ENCFF285WOP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF518OLR bigBed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF348ICN 10014911 ENCODE Processing Pipeline 88f19f35a5d53e7a8e3bd53a3ba8d467 https://www.encodeproject.org/files/ENCFF518OLR/@@download/ENCFF518OLR.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF268NXQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF571FGG 602943 ENCODE Processing Pipeline f3ead951962cfcd2e0de199d6f96c384 https://www.encodeproject.org/files/ENCFF268NXQ/@@download/ENCFF268NXQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF423AUD bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF910NHM 77347234 ENCODE Processing Pipeline fe2a53eb617ac36b4f28fefdb39a166a https://www.encodeproject.org/files/ENCFF423AUD/@@download/ENCFF423AUD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF383GJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF896UZB 869959 ENCODE Processing Pipeline d983ba1547fdf206b20e453969f1d709 https://www.encodeproject.org/files/ENCFF383GJE/@@download/ENCFF383GJE.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF130LTQ bigWig signal p-value ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF910NHM, ENCFF987AWV 166121336 ENCODE Processing Pipeline d9abd02ccd9019454434b987ab6e7f45 https://www.encodeproject.org/files/ENCFF130LTQ/@@download/ENCFF130LTQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF508VCB bigWig fold change over control ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF910NHM 202548971 ENCODE Processing Pipeline fba7998265ec514261a26c184cff2248 https://www.encodeproject.org/files/ENCFF508VCB/@@download/ENCFF508VCB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF348ICN bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF910NHM 4142798 ENCODE Processing Pipeline 07056d629130f0f52ce4790b0fa19fae https://www.encodeproject.org/files/ENCFF348ICN/@@download/ENCFF348ICN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF624PVA fastq reads ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF827MSA 1847317374 Michael Snyder, Stanford c002c6bdfddf573ac284367b31a3b64a SRA:SRR6213831 https://www.encodeproject.org/files/ENCFF624PVA/@@download/ENCFF624PVA.fastq.gz Illumina HiSeq 4000 /files/ENCFF400DBC/ released antibody characterized with exemption ENCFF827MSA fastq reads ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF624PVA 2059387476 Michael Snyder, Stanford 2f9cf389ce365de793faeb488495e9f0 SRA:SRR6213831 https://www.encodeproject.org/files/ENCFF827MSA/@@download/ENCFF827MSA.fastq.gz Illumina HiSeq 4000 /files/ENCFF764QLI/ released antibody characterized with exemption ENCFF625END bam unfiltered alignments ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF624PVA, ENCFF807MUK, ENCFF827MSA 3649480339 ENCODE Processing Pipeline 816f5f2b74042ec80fafe4026301de8a https://www.encodeproject.org/files/ENCFF625END/@@download/ENCFF625END.bam hg19 released antibody characterized with exemption ENCFF877TJY bam alignments ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF624PVA, ENCFF807MUK, ENCFF827MSA 2932990302 ENCODE Processing Pipeline cabec61a75b0ea82cd15238459cc29aa https://www.encodeproject.org/files/ENCFF877TJY/@@download/ENCFF877TJY.bam hg19 released antibody characterized with exemption ENCFF053RTX bam unfiltered alignments ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF624PVA, ENCFF643CGH, ENCFF827MSA 3653568446 ENCODE Processing Pipeline b861b72079311f4e4a891104eb550d55 https://www.encodeproject.org/files/ENCFF053RTX/@@download/ENCFF053RTX.bam GRCh38 released antibody characterized with exemption ENCFF221DPL bam alignments ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF624PVA, ENCFF643CGH, ENCFF827MSA 2934061274 ENCODE Processing Pipeline bce53914fc31275242e15ff84760932e https://www.encodeproject.org/files/ENCFF221DPL/@@download/ENCFF221DPL.bam GRCh38 released antibody characterized with exemption ENCFF591WDD bigWig signal p-value ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF106EBG, ENCFF877TJY 975331932 ENCODE Processing Pipeline 72d69796cd5f0a32a85da35c081b3867 https://www.encodeproject.org/files/ENCFF591WDD/@@download/ENCFF591WDD.bigWig hg19 released antibody characterized with exemption ENCFF040FDV bigWig fold change over control ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF106EBG, ENCFF877TJY 882743115 ENCODE Processing Pipeline e1a82ee801c07e2c1b254232f593d650 https://www.encodeproject.org/files/ENCFF040FDV/@@download/ENCFF040FDV.bigWig hg19 released antibody characterized with exemption ENCFF566UPM bed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF106EBG, ENCFF877TJY 5615141 ENCODE Processing Pipeline e03992ef808a39698d072763307d482a https://www.encodeproject.org/files/ENCFF566UPM/@@download/ENCFF566UPM.bed.gz hg19 released antibody characterized with exemption ENCFF156VNT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF566UPM 509551 ENCODE Processing Pipeline ef61263190c664f2b82fc7a77f2dd8da https://www.encodeproject.org/files/ENCFF156VNT/@@download/ENCFF156VNT.bed.gz hg19 released antibody characterized with exemption ENCFF181JYP bigBed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF566UPM 11926861 ENCODE Processing Pipeline d3224fa9aeb685b6fd8bd1a497d23ad7 https://www.encodeproject.org/files/ENCFF181JYP/@@download/ENCFF181JYP.bigBed hg19 released antibody characterized with exemption ENCFF804WSY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF156VNT 1024039 ENCODE Processing Pipeline 329f56daddb4ab97519e8f26e4e09e14 https://www.encodeproject.org/files/ENCFF804WSY/@@download/ENCFF804WSY.bigBed hg19 released antibody characterized with exemption ENCFF900GKE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF401WKA, ENCFF419RSJ 511120 ENCODE Processing Pipeline 504df33facb5d8453e5ba1e76c18d8c5 https://www.encodeproject.org/files/ENCFF900GKE/@@download/ENCFF900GKE.bed.gz GRCh38 released antibody characterized with exemption ENCFF972VIG bigWig signal p-value ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF221DPL, ENCFF533JZM 1097144535 ENCODE Processing Pipeline 07810e9587be9687f81250c95570a186 https://www.encodeproject.org/files/ENCFF972VIG/@@download/ENCFF972VIG.bigWig GRCh38 released antibody characterized with exemption ENCFF401WKA bed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF221DPL, ENCFF533JZM 5618542 ENCODE Processing Pipeline 14698e67f0795fb707ceb7d410b9c65c https://www.encodeproject.org/files/ENCFF401WKA/@@download/ENCFF401WKA.bed.gz GRCh38 released antibody characterized with exemption ENCFF115FSX bigWig fold change over control ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF221DPL, ENCFF533JZM 879132865 ENCODE Processing Pipeline dca0e2f0dc1c63ac9b458c9a1d8740b4 https://www.encodeproject.org/files/ENCFF115FSX/@@download/ENCFF115FSX.bigWig GRCh38 released antibody characterized with exemption ENCFF878ZHW bigBed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF401WKA 11944599 ENCODE Processing Pipeline 16da1b83615f94e6a572f50486d04bbe https://www.encodeproject.org/files/ENCFF878ZHW/@@download/ENCFF878ZHW.bigBed GRCh38 released antibody characterized with exemption ENCFF340MAF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF900GKE 1029443 ENCODE Processing Pipeline ca379fa1af9350d8d4537eac53c5f9a2 https://www.encodeproject.org/files/ENCFF340MAF/@@download/ENCFF340MAF.bigBed GRCh38 released antibody characterized with exemption ENCFF543YKB fastq reads ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF534EOG 2542603092 Michael Snyder, Stanford 6c2ed632ee26de81008abc59e79f04ad SRA:SRR6214415 https://www.encodeproject.org/files/ENCFF543YKB/@@download/ENCFF543YKB.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF723BUN fastq reads ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF298JQC 2487814426 Michael Snyder, Stanford 3fc4fe4ec9b0dd19f3d9edd904057029 SRA:SRR6214416 https://www.encodeproject.org/files/ENCFF723BUN/@@download/ENCFF723BUN.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF298JQC fastq reads ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF723BUN 2498850991 Michael Snyder, Stanford 845588214a2d290f749097db0a08e3e9 SRA:SRR6214416 https://www.encodeproject.org/files/ENCFF298JQC/@@download/ENCFF298JQC.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF534EOG fastq reads ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF543YKB 2558500855 Michael Snyder, Stanford 103055d892e8e91934ca60e494e8e6ed SRA:SRR6214415 https://www.encodeproject.org/files/ENCFF534EOG/@@download/ENCFF534EOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF234VDC bam unfiltered alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF534EOG, ENCFF543YKB, ENCFF807MUK 5224242697 ENCODE Processing Pipeline bc4a7812f8e175adc01819fb1fc30fd0 https://www.encodeproject.org/files/ENCFF234VDC/@@download/ENCFF234VDC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF209GYQ bam unfiltered alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF298JQC, ENCFF723BUN, ENCFF807MUK 5123776479 ENCODE Processing Pipeline b11f8fb49d4a10a98b20abd0825a53bd https://www.encodeproject.org/files/ENCFF209GYQ/@@download/ENCFF209GYQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF853FMZ bam unfiltered alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF534EOG, ENCFF543YKB, ENCFF643CGH 5231408450 ENCODE Processing Pipeline f64d30c45614977155e63ef11bd59f8d https://www.encodeproject.org/files/ENCFF853FMZ/@@download/ENCFF853FMZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF882DNM bam unfiltered alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF298JQC, ENCFF643CGH, ENCFF723BUN 5130787468 ENCODE Processing Pipeline 9ba154bdc6d5771ed39baa7315dae308 https://www.encodeproject.org/files/ENCFF882DNM/@@download/ENCFF882DNM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF381YPW bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF534EOG, ENCFF543YKB, ENCFF643CGH 4442095368 ENCODE Processing Pipeline 2f6c801e89561030f4cc3584125d84f3 https://www.encodeproject.org/files/ENCFF381YPW/@@download/ENCFF381YPW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF929VDB bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF298JQC, ENCFF643CGH, ENCFF723BUN 4395082919 ENCODE Processing Pipeline f796cede153d136a593c4ab006cb4ada https://www.encodeproject.org/files/ENCFF929VDB/@@download/ENCFF929VDB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF396RJB bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF534EOG, ENCFF543YKB, ENCFF807MUK 4440516158 ENCODE Processing Pipeline 54a2bed36b5c831e359ebebc321a12c0 https://www.encodeproject.org/files/ENCFF396RJB/@@download/ENCFF396RJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF999XUY bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF298JQC, ENCFF723BUN, ENCFF807MUK 4393325235 ENCODE Processing Pipeline fa39f3a750ad3c77f856eefd8fc9f693 https://www.encodeproject.org/files/ENCFF999XUY/@@download/ENCFF999XUY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF865RFN bigWig fold change over control ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF999XUY 1337717296 ENCODE Processing Pipeline 13143d204edcbf46147b8989e7930d08 https://www.encodeproject.org/files/ENCFF865RFN/@@download/ENCFF865RFN.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF318BOM bigWig signal p-value ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF396RJB, ENCFF999XUY 1627779777 ENCODE Processing Pipeline debf4f8c5bf474418996f286bf6624fa https://www.encodeproject.org/files/ENCFF318BOM/@@download/ENCFF318BOM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF292RHK bigWig fold change over control ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF396RJB, ENCFF999XUY 1901436340 ENCODE Processing Pipeline 76fed11214660467ba1b9566560e5f0b https://www.encodeproject.org/files/ENCFF292RHK/@@download/ENCFF292RHK.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF775EJM bigWig signal p-value ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF396RJB 1297152845 ENCODE Processing Pipeline f09f1712751c19b5f4e4c34bed06b928 https://www.encodeproject.org/files/ENCFF775EJM/@@download/ENCFF775EJM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF875KSM bigWig signal p-value ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF999XUY 1292986895 ENCODE Processing Pipeline 60f34943e175837471852fa213257157 https://www.encodeproject.org/files/ENCFF875KSM/@@download/ENCFF875KSM.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF603PBL bigWig fold change over control ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF929VDB 1365935705 ENCODE Processing Pipeline 247534dd039940ff956e43fb3e915e64 https://www.encodeproject.org/files/ENCFF603PBL/@@download/ENCFF603PBL.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF614AFY bigWig signal p-value ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF381YPW 1195632947 ENCODE Processing Pipeline 80ced58ebc55be33f644710e4ef71f18 https://www.encodeproject.org/files/ENCFF614AFY/@@download/ENCFF614AFY.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF596TET bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF396RJB 6295954 ENCODE Processing Pipeline 17a9a506e9347c08ecc8fe3b3577430f https://www.encodeproject.org/files/ENCFF596TET/@@download/ENCFF596TET.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF479IDF bigWig signal p-value ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF929VDB 1396506818 ENCODE Processing Pipeline 701bc6d0c8324a342ee950efc95e56d9 https://www.encodeproject.org/files/ENCFF479IDF/@@download/ENCFF479IDF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF894FGT bigWig signal p-value ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF381YPW, ENCFF929VDB 1706589546 ENCODE Processing Pipeline 5132693f1f8221da824c81a86d6f1952 https://www.encodeproject.org/files/ENCFF894FGT/@@download/ENCFF894FGT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF525EVD bigWig fold change over control ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF396RJB 1315005712 ENCODE Processing Pipeline aa4cfd5d030d5328ccdf69a1c72977f6 https://www.encodeproject.org/files/ENCFF525EVD/@@download/ENCFF525EVD.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF530BWF bigWig fold change over control ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF381YPW 1375659697 ENCODE Processing Pipeline 119aec6166e6cf7b2ed04c96234243db https://www.encodeproject.org/files/ENCFF530BWF/@@download/ENCFF530BWF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF774DID bigWig fold change over control ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF381YPW, ENCFF929VDB 1912905963 ENCODE Processing Pipeline 55118a5b50a3475f857d23526b29f5c5 https://www.encodeproject.org/files/ENCFF774DID/@@download/ENCFF774DID.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF912TOK bigBed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF596TET 11219087 ENCODE Processing Pipeline bb433054b98f52f29d435347faa8bb15 https://www.encodeproject.org/files/ENCFF912TOK/@@download/ENCFF912TOK.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF180UFR bigBed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF602ZDR 11219720 ENCODE Processing Pipeline 19cda7820b5a1361b0526d50de8fe18c https://www.encodeproject.org/files/ENCFF180UFR/@@download/ENCFF180UFR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF549NHO bigBed narrowPeak conservative idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF310RGM 60033 ENCODE Processing Pipeline 3b7171476b3dcde58619f9141bdd6734 https://www.encodeproject.org/files/ENCFF549NHO/@@download/ENCFF549NHO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF517RFG bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF381YPW, ENCFF929VDB 7003051 ENCODE Processing Pipeline 1730a4b2259b6be4a408b646994f76a9 https://www.encodeproject.org/files/ENCFF517RFG/@@download/ENCFF517RFG.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF155EHV bigBed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF887IUA 11235577 ENCODE Processing Pipeline ff4fe0ac79995a34803c84fdc4708e38 https://www.encodeproject.org/files/ENCFF155EHV/@@download/ENCFF155EHV.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF071VIC bed narrowPeak conservative idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF517RFG, ENCFF602ZDR, ENCFF887IUA 10514 ENCODE Processing Pipeline 6cd12435767ffc0111e8a6cce13365ba https://www.encodeproject.org/files/ENCFF071VIC/@@download/ENCFF071VIC.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF684UEV bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF999XUY 6202037 ENCODE Processing Pipeline 5b91ad55f5e0ef1fa5501e74e917a780 https://www.encodeproject.org/files/ENCFF684UEV/@@download/ENCFF684UEV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF565EFZ bigBed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF684UEV 11232743 ENCODE Processing Pipeline 7f4c2c29665ed9a0484d68ee70e72717 https://www.encodeproject.org/files/ENCFF565EFZ/@@download/ENCFF565EFZ.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF488BEL bigBed narrowPeak optimal idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF156HJU 68513 ENCODE Processing Pipeline c98036c49d48c11f54d266a72dab4fc0 https://www.encodeproject.org/files/ENCFF488BEL/@@download/ENCFF488BEL.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF420LEC bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF396RJB, ENCFF999XUY 7005566 ENCODE Processing Pipeline 7a2f7f89e65fb1fb3161693924bf3f23 https://www.encodeproject.org/files/ENCFF420LEC/@@download/ENCFF420LEC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF602ZDR bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF381YPW 6293140 ENCODE Processing Pipeline b6c779665c438557eaa5ea459e1fb08f https://www.encodeproject.org/files/ENCFF602ZDR/@@download/ENCFF602ZDR.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF310RGM bed narrowPeak conservative idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF420LEC, ENCFF596TET, ENCFF684UEV 10312 ENCODE Processing Pipeline df551a62c5094d9157ae63620841b94d https://www.encodeproject.org/files/ENCFF310RGM/@@download/ENCFF310RGM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF969JWR bigBed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF517RFG 11242454 ENCODE Processing Pipeline 27acbd54c380ab769acb1e56843619d5 https://www.encodeproject.org/files/ENCFF969JWR/@@download/ENCFF969JWR.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF641AVV bed narrowPeak optimal idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF517RFG, ENCFF602ZDR, ENCFF887IUA 16573 ENCODE Processing Pipeline f6aff34efc18cb41e4f43309e17746ec https://www.encodeproject.org/files/ENCFF641AVV/@@download/ENCFF641AVV.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF887IUA bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF929VDB 6205990 ENCODE Processing Pipeline 625faece24dbd5723565554d45f57b82 https://www.encodeproject.org/files/ENCFF887IUA/@@download/ENCFF887IUA.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF291BCM bigBed narrowPeak conservative idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF071VIC 61021 ENCODE Processing Pipeline 04a92b69cfd2874e56d2f18a707c275a https://www.encodeproject.org/files/ENCFF291BCM/@@download/ENCFF291BCM.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF894BPA bigBed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF420LEC 11221277 ENCODE Processing Pipeline e98c9122af66a2a8ff443c62bb042dc6 https://www.encodeproject.org/files/ENCFF894BPA/@@download/ENCFF894BPA.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF156HJU bed narrowPeak optimal idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF420LEC, ENCFF596TET, ENCFF684UEV 16339 ENCODE Processing Pipeline 96c0953c0267ec21bdf7cee64c0362ba https://www.encodeproject.org/files/ENCFF156HJU/@@download/ENCFF156HJU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF434VKN bigBed narrowPeak optimal idr thresholded peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF641AVV 69768 ENCODE Processing Pipeline cb914247188f54fc46467d2042e98b81 https://www.encodeproject.org/files/ENCFF434VKN/@@download/ENCFF434VKN.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF000OAO bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OBB 1291463709 Richard Myers, HAIB dbdc8e6f75c73c64ccac21113c418b9a https://www.encodeproject.org/files/ENCFF000OAO/@@download/ENCFF000OAO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAP bigBed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYI 1616649 Richard Myers, HAIB 92aa549f0ea1f3533d3b8e61918390f2 https://www.encodeproject.org/files/ENCFF000OAP/@@download/ENCFF000OAP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAQ bigBed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYJ 1714943 Richard Myers, HAIB e2b9a81ac74b96d42e887d63b984fba1 https://www.encodeproject.org/files/ENCFF000OAQ/@@download/ENCFF000OAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAR bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OBE 1304539164 Richard Myers, HAIB 4349753a4fcaa55782ece69642933bcd https://www.encodeproject.org/files/ENCFF000OAR/@@download/ENCFF000OAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAT bigWig raw signal ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 119320345 Richard Myers, HAIB 0259bbc36bcc0424779084adccd69da5 https://www.encodeproject.org/files/ENCFF000OAT/@@download/ENCFF000OAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OAV bigWig raw signal ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 129039927 Richard Myers, HAIB c82dfa76a8d96a4534d4487857286c3f https://www.encodeproject.org/files/ENCFF000OAV/@@download/ENCFF000OAV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OBB fastq reads ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1888750897 Richard Myers, HAIB 5b77b7903fd3b50615629e1eca254e25 https://www.encodeproject.org/files/ENCFF000OBB/@@download/ENCFF000OBB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000OBE fastq reads ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2174113476 Richard Myers, HAIB 8ebc26278136df2f2d43683e5849e626 https://www.encodeproject.org/files/ENCFF000OBE/@@download/ENCFF000OBE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF001TYI bed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 847298 Richard Myers, HAIB feb44a14128795975f3153b197ec79af https://www.encodeproject.org/files/ENCFF001TYI/@@download/ENCFF001TYI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TYJ bed broadPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 886866 Richard Myers, HAIB 43e06571a01b40fe48958f157bee3915 https://www.encodeproject.org/files/ENCFF001TYJ/@@download/ENCFF001TYJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CHO bed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 590379 ENCODE Consortium Analysis Working Group 88dffe9237451b6aecab755ae94462fd https://www.encodeproject.org/files/ENCFF002CHO/@@download/ENCFF002CHO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF558QBE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHO 1443272 ENCODE Consortium d298e09f01cd36f16ec8e0de2c997e29 https://www.encodeproject.org/files/ENCFF558QBE/@@download/ENCFF558QBE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF020RXG bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF807MUK 2159896569 ENCODE Processing Pipeline 9a0c9d6a16eedea7fc94ebf5bf72a3b4 https://www.encodeproject.org/files/ENCFF020RXG/@@download/ENCFF020RXG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF668XIT bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF643CGH 1917176049 ENCODE Processing Pipeline 791acec050a3a163a47941b1671e3584 https://www.encodeproject.org/files/ENCFF668XIT/@@download/ENCFF668XIT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF726CVN bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF807MUK 1913984884 ENCODE Processing Pipeline c7ce074b972201ec6a2292031d643d62 https://www.encodeproject.org/files/ENCFF726CVN/@@download/ENCFF726CVN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF865BUP bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF807MUK 730991573 ENCODE Processing Pipeline ea451bf9500b1027f5336de0adf709f7 https://www.encodeproject.org/files/ENCFF865BUP/@@download/ENCFF865BUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF418NDO bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF643CGH 734328978 ENCODE Processing Pipeline 24ff006ae8b04a65da3529f958c75f12 https://www.encodeproject.org/files/ENCFF418NDO/@@download/ENCFF418NDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591BQK bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF807MUK 752226113 ENCODE Processing Pipeline e5ae3519b6a9f8488912e3e192b6c7f6 https://www.encodeproject.org/files/ENCFF591BQK/@@download/ENCFF591BQK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF795DHE bam unfiltered alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF643CGH 2163490981 ENCODE Processing Pipeline f209dc588a699f33b81325f92743143c https://www.encodeproject.org/files/ENCFF795DHE/@@download/ENCFF795DHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF036AWP bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF643CGH 755210701 ENCODE Processing Pipeline cbb8035725332d14c6dfd204116a12e3 https://www.encodeproject.org/files/ENCFF036AWP/@@download/ENCFF036AWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF917WUN bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 588015247 ENCODE Processing Pipeline 1258829cfe1298a7f1f288deb982f388 https://www.encodeproject.org/files/ENCFF917WUN/@@download/ENCFF917WUN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF297FPN bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 622151934 ENCODE Processing Pipeline d9de2394514dcdc495ec1c6dda995897 https://www.encodeproject.org/files/ENCFF297FPN/@@download/ENCFF297FPN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF949LAB bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY, ENCFF865BUP 709321749 ENCODE Processing Pipeline 440daf455231100de08d07de24f69db9 https://www.encodeproject.org/files/ENCFF949LAB/@@download/ENCFF949LAB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF644WID bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 345471803 ENCODE Processing Pipeline 30ce04dcb0a255d2c467c67eef495624 https://www.encodeproject.org/files/ENCFF644WID/@@download/ENCFF644WID.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF593AJA bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 360733904 ENCODE Processing Pipeline d05aa19c748edea25324f31f6deea27e https://www.encodeproject.org/files/ENCFF593AJA/@@download/ENCFF593AJA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF368HBX bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY, ENCFF865BUP 557809721 ENCODE Processing Pipeline 77e7108e74b5bee5b0b73a226ea87a96 https://www.encodeproject.org/files/ENCFF368HBX/@@download/ENCFF368HBX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF879SHG bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 6758714 ENCODE Processing Pipeline 5e93c7295b5b593f91a509b6fe23f11b https://www.encodeproject.org/files/ENCFF879SHG/@@download/ENCFF879SHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591LRS bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 6659552 ENCODE Processing Pipeline 8c8c2d8412f808ae8d170201a02edb5d https://www.encodeproject.org/files/ENCFF591LRS/@@download/ENCFF591LRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF630QJJ bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY, ENCFF865BUP 6990535 ENCODE Processing Pipeline b1bdc3fff65041bb6cc7077f95f3d74c https://www.encodeproject.org/files/ENCFF630QJJ/@@download/ENCFF630QJJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF939BPS bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF879SHG 11650298 ENCODE Processing Pipeline a0fb0686d578a33303706d72a67eaff2 https://www.encodeproject.org/files/ENCFF939BPS/@@download/ENCFF939BPS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF639GMF bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF591LRS 11743673 ENCODE Processing Pipeline 34f401ccc2567c2181c664065564ae80 https://www.encodeproject.org/files/ENCFF639GMF/@@download/ENCFF639GMF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF773BJM bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF630QJJ 11683828 ENCODE Processing Pipeline 0b4184ba92ab5df218d3771d265a067e https://www.encodeproject.org/files/ENCFF773BJM/@@download/ENCFF773BJM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF587YZD bed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF591LRS, ENCFF630QJJ, ENCFF879SHG 770947 ENCODE Processing Pipeline 2a62f1a3226d5ff0a91a3469fb6ab8e6 https://www.encodeproject.org/files/ENCFF587YZD/@@download/ENCFF587YZD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF719TKY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587YZD 1791763 ENCODE Processing Pipeline d88c6dc938191b1fb60ba91aaa945565 https://www.encodeproject.org/files/ENCFF719TKY/@@download/ENCFF719TKY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF120VUT bed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF591LRS, ENCFF630QJJ, ENCFF879SHG 820085 ENCODE Processing Pipeline bca31e848a128f562b9082c678c3ad04 https://www.encodeproject.org/files/ENCFF120VUT/@@download/ENCFF120VUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF937DJK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF120VUT 1885804 ENCODE Processing Pipeline 9656dabb1ba82ef1e8b5e8999682a64e https://www.encodeproject.org/files/ENCFF937DJK/@@download/ENCFF937DJK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF133ISK bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 530896721 ENCODE Processing Pipeline 5900df25e364650747ab6c68c25c215d https://www.encodeproject.org/files/ENCFF133ISK/@@download/ENCFF133ISK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF770SHV bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF036AWP, ENCFF289ONG, ENCFF862QZT 553017377 ENCODE Processing Pipeline b9ac3f60b8d2097215969def817a0f53 https://www.encodeproject.org/files/ENCFF770SHV/@@download/ENCFF770SHV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF776ZUU bigWig signal p-value ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036AWP, ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 701914670 ENCODE Processing Pipeline 7fa36fbdaa720c065afc759ed4bb5612 https://www.encodeproject.org/files/ENCFF776ZUU/@@download/ENCFF776ZUU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF355BAY bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 353686926 ENCODE Processing Pipeline f9faf2710b5ef9fdc8ecfd7e5eb176eb https://www.encodeproject.org/files/ENCFF355BAY/@@download/ENCFF355BAY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF340BYJ bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF036AWP, ENCFF289ONG, ENCFF862QZT 362699813 ENCODE Processing Pipeline 7bacebcbe4c99cc34b743b83e162a866 https://www.encodeproject.org/files/ENCFF340BYJ/@@download/ENCFF340BYJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF600UCV bigWig fold change over control ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036AWP, ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 558154629 ENCODE Processing Pipeline d8ce1cf028ad690150d7391ba192a432 https://www.encodeproject.org/files/ENCFF600UCV/@@download/ENCFF600UCV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF409RXS bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 7062241 ENCODE Processing Pipeline 3de8be550eeaa27cf8e56e84f5a746e6 https://www.encodeproject.org/files/ENCFF409RXS/@@download/ENCFF409RXS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF786LVK bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF036AWP, ENCFF289ONG, ENCFF862QZT 7054015 ENCODE Processing Pipeline 6f366cd52ed9a55f10dbd823edd03cd8 https://www.encodeproject.org/files/ENCFF786LVK/@@download/ENCFF786LVK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF987SUJ bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036AWP, ENCFF289ONG, ENCFF418NDO, ENCFF862QZT 7316535 ENCODE Processing Pipeline c94b26f936b215913251a9368624d896 https://www.encodeproject.org/files/ENCFF987SUJ/@@download/ENCFF987SUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF030ITY bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF409RXS 11995700 ENCODE Processing Pipeline 22d0cb1e0c34aa3ae2fd8556e8d252cf https://www.encodeproject.org/files/ENCFF030ITY/@@download/ENCFF030ITY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF755HUJ bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF786LVK 12191978 ENCODE Processing Pipeline 622b48b875b880b2fac3b31ad46a6d10 https://www.encodeproject.org/files/ENCFF755HUJ/@@download/ENCFF755HUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF986OZR bigBed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF987SUJ 12058517 ENCODE Processing Pipeline aeffc40459564716ac8ae931cc3d858c https://www.encodeproject.org/files/ENCFF986OZR/@@download/ENCFF986OZR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF794VYB bed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF409RXS, ENCFF419RSJ, ENCFF786LVK, ENCFF987SUJ 835693 ENCODE Processing Pipeline 5333557c51cf9ead1a16cde22274d734 https://www.encodeproject.org/files/ENCFF794VYB/@@download/ENCFF794VYB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF211AJX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF794VYB 1902071 ENCODE Processing Pipeline c2f28507b5fad6bd5a0efc5795cc0357 https://www.encodeproject.org/files/ENCFF211AJX/@@download/ENCFF211AJX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF455ZLJ bed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF409RXS, ENCFF419RSJ, ENCFF786LVK, ENCFF987SUJ 889824 ENCODE Processing Pipeline 09d7e00ece3d0d68c1485b38d2c7fe64 https://www.encodeproject.org/files/ENCFF455ZLJ/@@download/ENCFF455ZLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF977WLL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF455ZLJ 2004850 ENCODE Processing Pipeline c31f069b0643f5e7b6f628f50cb5495b https://www.encodeproject.org/files/ENCFF977WLL/@@download/ENCFF977WLL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PED bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PEQ 1367210412 Richard Myers, HAIB 30f7fe368df380a6fb04c1b5d0f702c4 https://www.encodeproject.org/files/ENCFF000PED/@@download/ENCFF000PED.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEE bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PEM 724935183 Richard Myers, HAIB 7ee73f4267e65e34fd9fe98ebaaebee4 https://www.encodeproject.org/files/ENCFF000PEE/@@download/ENCFF000PEE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEF bigBed broadPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UEY 304242 Richard Myers, HAIB 9d0ff3e57896f98345659ca3195770c5 https://www.encodeproject.org/files/ENCFF000PEF/@@download/ENCFF000PEF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEG bigBed broadPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UEZ 342065 Richard Myers, HAIB 74f868d135e3ef5eaaa11f77ea3eb656 https://www.encodeproject.org/files/ENCFF000PEG/@@download/ENCFF000PEG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEI bigWig raw signal ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 10146085 Richard Myers, HAIB c8682256478f9786bce0922004f2d7bb https://www.encodeproject.org/files/ENCFF000PEI/@@download/ENCFF000PEI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PEJ bigWig raw signal ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 10746156 Richard Myers, HAIB 42cfbd9517bea0288fcd42ad99eb2173 https://www.encodeproject.org/files/ENCFF000PEJ/@@download/ENCFF000PEJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PEM fastq reads ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 697822000 Richard Myers, HAIB b94471233d3c7af5ff9a8b67a188a718 https://www.encodeproject.org/files/ENCFF000PEM/@@download/ENCFF000PEM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEQ fastq reads ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1250853408 Richard Myers, HAIB c0b47c0a80929440a070a6eb4563c281 https://www.encodeproject.org/files/ENCFF000PEQ/@@download/ENCFF000PEQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF001UEY bed broadPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 156365 Richard Myers, HAIB 86423063f47291e026bb7f82c45da6db https://www.encodeproject.org/files/ENCFF001UEY/@@download/ENCFF001UEY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UEZ bed broadPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 194910 Richard Myers, HAIB 8663a8240ca9951563dca20a68794cae https://www.encodeproject.org/files/ENCFF001UEZ/@@download/ENCFF001UEZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CJY bed narrowPeak optimal idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 207254 ENCODE Consortium Analysis Working Group 14614b562eba5f555233926b8a0d4db7 https://www.encodeproject.org/files/ENCFF002CJY/@@download/ENCFF002CJY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF361PFF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJY 398062 ENCODE Consortium 2edb248c1bae31814920444aa4fe4f5e https://www.encodeproject.org/files/ENCFF361PFF/@@download/ENCFF361PFF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF754IAO bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEM, ENCFF643CGH 521927877 ENCODE Processing Pipeline 56811148b6a3928fc3a97f7b12132cc2 https://www.encodeproject.org/files/ENCFF754IAO/@@download/ENCFF754IAO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF776JIL bam unfiltered alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEM, ENCFF643CGH 899608462 ENCODE Processing Pipeline 4649c24bfaae2eef0311ddca7d643216 https://www.encodeproject.org/files/ENCFF776JIL/@@download/ENCFF776JIL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF513DVS bam unfiltered alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEQ, ENCFF643CGH 1454991395 ENCODE Processing Pipeline d4ca722fca8c023f659741d123b51ac0 https://www.encodeproject.org/files/ENCFF513DVS/@@download/ENCFF513DVS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF355WAL bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEQ, ENCFF643CGH 460086995 ENCODE Processing Pipeline cf5aade4337ccd52d4fb38fc3311a281 https://www.encodeproject.org/files/ENCFF355WAL/@@download/ENCFF355WAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF490CSD bam unfiltered alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEM, ENCFF807MUK 896438649 ENCODE Processing Pipeline 70cbd5337d3c51839215f49bf57bf1f3 https://www.encodeproject.org/files/ENCFF490CSD/@@download/ENCFF490CSD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF742LFF bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEM, ENCFF807MUK 521460178 ENCODE Processing Pipeline 1c172268dbb400b25a706fe1e09141dc https://www.encodeproject.org/files/ENCFF742LFF/@@download/ENCFF742LFF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF771VTL bam unfiltered alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEQ, ENCFF807MUK 1451538292 ENCODE Processing Pipeline c2f3031aca02c4272c3a312fdd383aa3 https://www.encodeproject.org/files/ENCFF771VTL/@@download/ENCFF771VTL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF647PGL bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEQ, ENCFF807MUK 460341992 ENCODE Processing Pipeline aa54304f99bdfb2e662585a16cfa9c9e https://www.encodeproject.org/files/ENCFF647PGL/@@download/ENCFF647PGL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF302PZA bigWig signal p-value ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF355WAL 398728494 ENCODE Processing Pipeline bce743b49e5f8c5f200f2b7952293463 https://www.encodeproject.org/files/ENCFF302PZA/@@download/ENCFF302PZA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF810PGS bigWig signal p-value ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF202PGY, ENCFF754IAO 341565141 ENCODE Processing Pipeline b4b2866c9b75d451034ec90ad913f715 https://www.encodeproject.org/files/ENCFF810PGS/@@download/ENCFF810PGS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF352JFB bigWig signal p-value ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202PGY, ENCFF355WAL, ENCFF754IAO 428017361 ENCODE Processing Pipeline 04f2c63e63d0d57ba4639c2feae807fc https://www.encodeproject.org/files/ENCFF352JFB/@@download/ENCFF352JFB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF023MRQ bigWig fold change over control ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF355WAL 199360449 ENCODE Processing Pipeline 8377f392f4f734375030d7a102956051 https://www.encodeproject.org/files/ENCFF023MRQ/@@download/ENCFF023MRQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF435NBI bigWig fold change over control ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF202PGY, ENCFF754IAO 274126814 ENCODE Processing Pipeline a619c29a36211cd0414ab2df98075005 https://www.encodeproject.org/files/ENCFF435NBI/@@download/ENCFF435NBI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF089QUB bigWig fold change over control ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202PGY, ENCFF355WAL, ENCFF754IAO 425014541 ENCODE Processing Pipeline 5851d75f5d6f23b37318a925399e8bc2 https://www.encodeproject.org/files/ENCFF089QUB/@@download/ENCFF089QUB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF262UVQ bigBed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF553EXE 7173892 ENCODE Processing Pipeline 6d48cf73fcba18313c88c83780b262f6 https://www.encodeproject.org/files/ENCFF262UVQ/@@download/ENCFF262UVQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF228MRQ bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF202PGY, ENCFF754IAO 4255853 ENCODE Processing Pipeline 082e5fc4ba9ea2d1c718ceafa3d3fbcc https://www.encodeproject.org/files/ENCFF228MRQ/@@download/ENCFF228MRQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF835GKN bigBed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF228MRQ 10543443 ENCODE Processing Pipeline f106f95a685b80187017a8180b0a3b35 https://www.encodeproject.org/files/ENCFF835GKN/@@download/ENCFF835GKN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF553EXE bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF355WAL 3352201 ENCODE Processing Pipeline 75174471e8b15d252811f5083aa79bb1 https://www.encodeproject.org/files/ENCFF553EXE/@@download/ENCFF553EXE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF086TZQ bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202PGY, ENCFF355WAL, ENCFF754IAO 4692643 ENCODE Processing Pipeline 8f7227c5efb835e7ef5eafe4810e2719 https://www.encodeproject.org/files/ENCFF086TZQ/@@download/ENCFF086TZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF619KDE bed narrowPeak conservative idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF086TZQ, ENCFF228MRQ, ENCFF419RSJ, ENCFF553EXE 126918 ENCODE Processing Pipeline 0e6f9e89560b13fe651ae71cf0eebe18 https://www.encodeproject.org/files/ENCFF619KDE/@@download/ENCFF619KDE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF208NUB bed narrowPeak optimal idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF086TZQ, ENCFF228MRQ, ENCFF419RSJ, ENCFF553EXE 198282 ENCODE Processing Pipeline 3a0823a118dde65ca89700b16c8ff92a https://www.encodeproject.org/files/ENCFF208NUB/@@download/ENCFF208NUB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF922NZF bigBed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF086TZQ 11045142 ENCODE Processing Pipeline 5ff8f28bb8d5cb0ecda896464b521259 https://www.encodeproject.org/files/ENCFF922NZF/@@download/ENCFF922NZF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF789FRX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208NUB 383984 ENCODE Processing Pipeline d998134e467af269dbcc641262503d36 https://www.encodeproject.org/files/ENCFF789FRX/@@download/ENCFF789FRX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF386TYK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF619KDE 286970 ENCODE Processing Pipeline 07dcd6e2e20bbd01b22396ac5fcc04d6 https://www.encodeproject.org/files/ENCFF386TYK/@@download/ENCFF386TYK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF716XRC bigWig signal p-value ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF742LFF 383609283 ENCODE Processing Pipeline 4c87d4c56bf84829960696ae939ac9db https://www.encodeproject.org/files/ENCFF716XRC/@@download/ENCFF716XRC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF764LLA bigWig signal p-value ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF647PGL, ENCFF742LFF 485633712 ENCODE Processing Pipeline 3ab80c9c3d9b902556a77cd58ae2bf0a https://www.encodeproject.org/files/ENCFF764LLA/@@download/ENCFF764LLA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF710PXV bigWig fold change over control ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF647PGL, ENCFF742LFF 420311824 ENCODE Processing Pipeline f35afe4670c80bad8e8b0dad82e7396c https://www.encodeproject.org/files/ENCFF710PXV/@@download/ENCFF710PXV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF838AOV bigBed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF129OMT 11032672 ENCODE Processing Pipeline c678f37f99e93de7dcdb8ed5082494a6 https://www.encodeproject.org/files/ENCFF838AOV/@@download/ENCFF838AOV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF162XDH bigWig signal p-value ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF647PGL 342142434 ENCODE Processing Pipeline cd6e3f8fedebf0d5531c98ac8713c247 https://www.encodeproject.org/files/ENCFF162XDH/@@download/ENCFF162XDH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF836CFJ bigBed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF988BKX 8877198 ENCODE Processing Pipeline 931bb0d5200eb1a8ecc2ddf39652fb04 https://www.encodeproject.org/files/ENCFF836CFJ/@@download/ENCFF836CFJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF936KOZ bigWig fold change over control ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF647PGL 199098945 ENCODE Processing Pipeline 1c56a7771a8d6cc53e82e4f613b7e049 https://www.encodeproject.org/files/ENCFF936KOZ/@@download/ENCFF936KOZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF624UEQ bigBed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF623RZZ 10550108 ENCODE Processing Pipeline 33948692ef8338db73901dbe8b5f4be9 https://www.encodeproject.org/files/ENCFF624UEQ/@@download/ENCFF624UEQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF988BKX bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF647PGL 3447852 ENCODE Processing Pipeline e23cbea553f3d4f38788cfd9a7e5777b https://www.encodeproject.org/files/ENCFF988BKX/@@download/ENCFF988BKX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF846UZP bed narrowPeak conservative idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF129OMT, ENCFF623RZZ, ENCFF988BKX 126237 ENCODE Processing Pipeline 0b90260b7970a8398ca1edaa7ad904fb https://www.encodeproject.org/files/ENCFF846UZP/@@download/ENCFF846UZP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF932CSV bed narrowPeak optimal idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF129OMT, ENCFF623RZZ, ENCFF988BKX 196122 ENCODE Processing Pipeline 6f3de2bcbff211cb74b9c8d2fa8fcbb4 https://www.encodeproject.org/files/ENCFF932CSV/@@download/ENCFF932CSV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF790LFX bigWig fold change over control ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF742LFF 274228203 ENCODE Processing Pipeline a24ddbfe5396458252f98d16bcfab2df https://www.encodeproject.org/files/ENCFF790LFX/@@download/ENCFF790LFX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF623RZZ bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF742LFF 4254752 ENCODE Processing Pipeline 092ea79f244ee5ddb6ced344bbeed5d4 https://www.encodeproject.org/files/ENCFF623RZZ/@@download/ENCFF623RZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF129OMT bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF647PGL, ENCFF742LFF 4683461 ENCODE Processing Pipeline a09f38a1c59da26361859650d0bc677e https://www.encodeproject.org/files/ENCFF129OMT/@@download/ENCFF129OMT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF456PAV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF846UZP 285531 ENCODE Processing Pipeline fda44ec6a424e5ec690a3ac3f42c8cbf https://www.encodeproject.org/files/ENCFF456PAV/@@download/ENCFF456PAV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF434JWK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF932CSV 380927 ENCODE Processing Pipeline fc7351e58aa10c2376b718bd11ef25ec https://www.encodeproject.org/files/ENCFF434JWK/@@download/ENCFF434JWK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000XWP bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XXC 415719859 Michael Snyder, Stanford d0de7df05b0689c1d820549049965652 https://www.encodeproject.org/files/ENCFF000XWP/@@download/ENCFF000XWP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XWQ bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XXB 509665675 Michael Snyder, Stanford f811440681d2070bd97357a36b8d10af https://www.encodeproject.org/files/ENCFF000XWQ/@@download/ENCFF000XWQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XWS bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKV 2951317 Michael Snyder, Stanford f6876699a53fc9f90d9f7c4be827912c https://www.encodeproject.org/files/ENCFF000XWS/@@download/ENCFF000XWS.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XWU bigWig signal ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 364260172 Michael Snyder, Stanford 5c70e352cc6f7762d103bc2f1113acc2 https://www.encodeproject.org/files/ENCFF000XWU/@@download/ENCFF000XWU.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XXB fastq reads ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1006558864 Michael Snyder, Stanford 4f1fb5746cf68a6f5e4aaccb582b5223 https://www.encodeproject.org/files/ENCFF000XXB/@@download/ENCFF000XXB.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XXC fastq reads ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 792245915 Michael Snyder, Stanford a6506b87611477bc62723d7b13ad4d5f https://www.encodeproject.org/files/ENCFF000XXC/@@download/ENCFF000XXC.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKV bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1236640 Michael Snyder, Stanford 376a369f55dd5124d1c50c8b5dd08b76 https://www.encodeproject.org/files/ENCFF001VKV/@@download/ENCFF001VKV.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CUR bed narrowPeak optimal idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 108398 ENCODE Consortium Analysis Working Group 00daed6635310be8c015344dbdd4477c https://www.encodeproject.org/files/ENCFF002CUR/@@download/ENCFF002CUR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF808YIW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUR 332124 ENCODE Consortium 31685738ecc152a2e02db84d187c01fe https://www.encodeproject.org/files/ENCFF808YIW/@@download/ENCFF808YIW.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF767ZNK bam unfiltered alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXB, ENCFF807MUK 1211026987 ENCODE Processing Pipeline a3c7be6a3884c76e9dbed248e89deeb3 https://www.encodeproject.org/files/ENCFF767ZNK/@@download/ENCFF767ZNK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF131TEK bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXC, ENCFF807MUK 691733608 ENCODE Processing Pipeline b55b61fdc7825c0672dcbae2e1ab7fde https://www.encodeproject.org/files/ENCFF131TEK/@@download/ENCFF131TEK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF902KSW bam unfiltered alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXC, ENCFF807MUK 983331915 ENCODE Processing Pipeline a81097288685f453f8a554a255483143 https://www.encodeproject.org/files/ENCFF902KSW/@@download/ENCFF902KSW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF846YRS bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXB, ENCFF807MUK 840853005 ENCODE Processing Pipeline 86b49d9b22952f931d86f6f90bf420a4 https://www.encodeproject.org/files/ENCFF846YRS/@@download/ENCFF846YRS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF244SHN bam unfiltered alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXC, ENCFF643CGH 987356603 ENCODE Processing Pipeline e6f43e6ff7ae49d5ace67ce6e73a2649 https://www.encodeproject.org/files/ENCFF244SHN/@@download/ENCFF244SHN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF411YGP bam unfiltered alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXB, ENCFF643CGH 1214869089 ENCODE Processing Pipeline 2a14db7d1d3108a29b0cd86156c87b6e https://www.encodeproject.org/files/ENCFF411YGP/@@download/ENCFF411YGP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF451VMR bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXC, ENCFF643CGH 691394215 ENCODE Processing Pipeline 04423f9255f4ee04ec17dc81a638772c https://www.encodeproject.org/files/ENCFF451VMR/@@download/ENCFF451VMR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF628GCY bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXB, ENCFF643CGH 840296577 ENCODE Processing Pipeline 0c45327919d1f716c077262b1a8944d1 https://www.encodeproject.org/files/ENCFF628GCY/@@download/ENCFF628GCY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF237QGI bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF131TEK 6208729 ENCODE Processing Pipeline a09059c938a3b07611df181b27eaa3f8 https://www.encodeproject.org/files/ENCFF237QGI/@@download/ENCFF237QGI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF316CBZ bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF846YRS 6638863 ENCODE Processing Pipeline 4fda371d435d62c0cdf47ff9e8d52c73 https://www.encodeproject.org/files/ENCFF316CBZ/@@download/ENCFF316CBZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF783DEP bed narrowPeak conservative idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF237QGI, ENCFF273UTG, ENCFF316CBZ 122827 ENCODE Processing Pipeline 9da36a5683979cb17caa36e8099784e4 https://www.encodeproject.org/files/ENCFF783DEP/@@download/ENCFF783DEP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF719HQT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF783DEP 328385 ENCODE Processing Pipeline 1ba5139f0194e6fd7b0542483c0c10c0 https://www.encodeproject.org/files/ENCFF719HQT/@@download/ENCFF719HQT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF648ZES bed narrowPeak optimal idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF237QGI, ENCFF273UTG, ENCFF316CBZ 129144 ENCODE Processing Pipeline de0a71d3bfb6018d2bfed3d7aebcac85 https://www.encodeproject.org/files/ENCFF648ZES/@@download/ENCFF648ZES.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF632YXE bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF237QGI 12682741 ENCODE Processing Pipeline 2f91a34792909bf8718353c4b7ecf9c3 https://www.encodeproject.org/files/ENCFF632YXE/@@download/ENCFF632YXE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF385NVH bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF316CBZ 12427195 ENCODE Processing Pipeline 37ecd94bb53d0a8e12894cb43086a442 https://www.encodeproject.org/files/ENCFF385NVH/@@download/ENCFF385NVH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF137PPA bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF273UTG 12393958 ENCODE Processing Pipeline b91a11d28028b59992edaf379b119381 https://www.encodeproject.org/files/ENCFF137PPA/@@download/ENCFF137PPA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF491BOG bigWig signal p-value ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF131TEK, ENCFF846YRS 712987190 ENCODE Processing Pipeline 3e454052743a3386ce568d47f8db0393 https://www.encodeproject.org/files/ENCFF491BOG/@@download/ENCFF491BOG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF117LOH bigWig fold change over control ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF131TEK, ENCFF846YRS 699468333 ENCODE Processing Pipeline f3e747f385c4077ccf8e43fa213d2b1c https://www.encodeproject.org/files/ENCFF117LOH/@@download/ENCFF117LOH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620HCW bigWig signal p-value ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF131TEK 504579014 ENCODE Processing Pipeline e8d140e5289544c776e8d1fe7e175aae https://www.encodeproject.org/files/ENCFF620HCW/@@download/ENCFF620HCW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF013FJO bigWig signal p-value ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF846YRS 595539601 ENCODE Processing Pipeline c41007563e036f1456b82086807ab13e https://www.encodeproject.org/files/ENCFF013FJO/@@download/ENCFF013FJO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF673FVQ bigWig fold change over control ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF131TEK 392563491 ENCODE Processing Pipeline a521e60546d43afaabcfee60851313bb https://www.encodeproject.org/files/ENCFF673FVQ/@@download/ENCFF673FVQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF863TEE bigWig fold change over control ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF846YRS 432831399 ENCODE Processing Pipeline 7a95e657f742fcf6591aca43e1376f44 https://www.encodeproject.org/files/ENCFF863TEE/@@download/ENCFF863TEE.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF273UTG bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF131TEK, ENCFF846YRS 6964628 ENCODE Processing Pipeline 8d67b5a6118a3fb855d1b2b945949aff https://www.encodeproject.org/files/ENCFF273UTG/@@download/ENCFF273UTG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF153TXI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF648ZES 340431 ENCODE Processing Pipeline 207f5162d3f72113674a3a729675c645 https://www.encodeproject.org/files/ENCFF153TXI/@@download/ENCFF153TXI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF955DMY bigWig fold change over control ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF451VMR 385936305 ENCODE Processing Pipeline 37356a47b2f5470cd937d6b312fbb095 https://www.encodeproject.org/files/ENCFF955DMY/@@download/ENCFF955DMY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375YTE bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF628GCY 6638798 ENCODE Processing Pipeline b36c1cf154d28b0bfdab9f93f401197f https://www.encodeproject.org/files/ENCFF375YTE/@@download/ENCFF375YTE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF337KCN bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF375YTE 12430048 ENCODE Processing Pipeline bfcabdf79b9e41afd7f1b834f1d1f8d1 https://www.encodeproject.org/files/ENCFF337KCN/@@download/ENCFF337KCN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF652YVO bed narrowPeak optimal idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF375YTE, ENCFF419RSJ, ENCFF799UUV, ENCFF856ZUP 132640 ENCODE Processing Pipeline 62fef576acc6cbdbee77bc57a4ef2448 https://www.encodeproject.org/files/ENCFF652YVO/@@download/ENCFF652YVO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF799UUV bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF451VMR, ENCFF628GCY 6939584 ENCODE Processing Pipeline 3710489c06133ef0d99bf5fea1926e11 https://www.encodeproject.org/files/ENCFF799UUV/@@download/ENCFF799UUV.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF475MTE bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF856ZUP 12700580 ENCODE Processing Pipeline 3f2e5dcd86c22d4543becd2f948ac729 https://www.encodeproject.org/files/ENCFF475MTE/@@download/ENCFF475MTE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF434XHU bigBed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF799UUV 12412286 ENCODE Processing Pipeline 332c8d87a590f4d2b55161078d9827d0 https://www.encodeproject.org/files/ENCFF434XHU/@@download/ENCFF434XHU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF990YRE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF652YVO 348260 ENCODE Processing Pipeline 0f487b89af79b53bb89d478c7ba62026 https://www.encodeproject.org/files/ENCFF990YRE/@@download/ENCFF990YRE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF646WOC bed narrowPeak conservative idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF375YTE, ENCFF419RSJ, ENCFF799UUV, ENCFF856ZUP 123496 ENCODE Processing Pipeline 977c4fd3fd77d501ae8f8c29ecc8f147 https://www.encodeproject.org/files/ENCFF646WOC/@@download/ENCFF646WOC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF750XRQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF646WOC 331116 ENCODE Processing Pipeline 07f123e54525cf661a1d44d6bcd8afd6 https://www.encodeproject.org/files/ENCFF750XRQ/@@download/ENCFF750XRQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF044XBJ bigWig signal p-value ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF451VMR 508727176 ENCODE Processing Pipeline 494b8cc3f14301f5b656bc08201ddc8b https://www.encodeproject.org/files/ENCFF044XBJ/@@download/ENCFF044XBJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF037LMD bigWig fold change over control ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF451VMR, ENCFF628GCY 685139777 ENCODE Processing Pipeline b8c597b58761b92987cba72d7bb39c14 https://www.encodeproject.org/files/ENCFF037LMD/@@download/ENCFF037LMD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF856ZUP bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF451VMR 6197512 ENCODE Processing Pipeline 89de0470c4aa3f4d3d8a44dc6fa6fe10 https://www.encodeproject.org/files/ENCFF856ZUP/@@download/ENCFF856ZUP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF664XSZ bigWig signal p-value ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF628GCY 604956712 ENCODE Processing Pipeline 9a91f4b6412cff6c1ebab459602caffa https://www.encodeproject.org/files/ENCFF664XSZ/@@download/ENCFF664XSZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459OJE bigWig signal p-value ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF451VMR, ENCFF628GCY 702864376 ENCODE Processing Pipeline 5661d999d183b7c5e7c96e0a54751de1 https://www.encodeproject.org/files/ENCFF459OJE/@@download/ENCFF459OJE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF782PPN bigWig fold change over control ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF628GCY 426749641 ENCODE Processing Pipeline 3db0489e1c4d12bb4ff7743add6dcc26 https://www.encodeproject.org/files/ENCFF782PPN/@@download/ENCFF782PPN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HIY bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HJI 562295147 John Stamatoyannopoulos, UW e45ee4e6b5605d75f8a92eb0ccaed96f https://www.encodeproject.org/files/ENCFF001HIY/@@download/ENCFF001HIY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HIZ bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HJH 580830322 John Stamatoyannopoulos, UW 0b89d681b3cc201a013cb2a239fc4630 https://www.encodeproject.org/files/ENCFF001HIZ/@@download/ENCFF001HIZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJA bigBed broadPeak hotspots ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XPR 3239021 John Stamatoyannopoulos, UW 25405f3b365cbb7998f287639047719f https://www.encodeproject.org/files/ENCFF001HJA/@@download/ENCFF001HJA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJB bigBed broadPeak hotspots ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XPS 2863749 John Stamatoyannopoulos, UW d6074a20580b13c362eeffbb46fe0101 https://www.encodeproject.org/files/ENCFF001HJB/@@download/ENCFF001HJB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJC bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XPT 1067372 John Stamatoyannopoulos, UW 9695a15a57fabc0417a3c0f937f269e7 https://www.encodeproject.org/files/ENCFF001HJC/@@download/ENCFF001HJC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJD bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XPU 889535 John Stamatoyannopoulos, UW feb1c8e55c294a5655f62162b86c177e https://www.encodeproject.org/files/ENCFF001HJD/@@download/ENCFF001HJD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJF bigWig raw signal ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIY 130406845 John Stamatoyannopoulos, UW 6cf832547e5e28de40e327617028c188 https://www.encodeproject.org/files/ENCFF001HJF/@@download/ENCFF001HJF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJG bigWig raw signal ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIZ 126276874 John Stamatoyannopoulos, UW 5a7de0284d081f8ec76211593bc2dc3e https://www.encodeproject.org/files/ENCFF001HJG/@@download/ENCFF001HJG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJH fastq reads ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 777144796 John Stamatoyannopoulos, UW 034ea46ebbe4e323b131f62a2e06695a https://www.encodeproject.org/files/ENCFF001HJH/@@download/ENCFF001HJH.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HJV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HJI fastq reads ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 632066508 John Stamatoyannopoulos, UW d4426eb36cff23a98eb4a2bd41580cea https://www.encodeproject.org/files/ENCFF001HJI/@@download/ENCFF001HJI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HJV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001XPR bed broadPeak hotspots ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIY 2194626 John Stamatoyannopoulos, UW 7d803be5d511ea2f3b43229b8fac77ee https://www.encodeproject.org/files/ENCFF001XPR/@@download/ENCFF001XPR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001XPS bed broadPeak hotspots ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIZ 1835353 John Stamatoyannopoulos, UW 5339299aa3ad42267fc947e4a0e8bb63 https://www.encodeproject.org/files/ENCFF001XPS/@@download/ENCFF001XPS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001XPT bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIY 751126 John Stamatoyannopoulos, UW d32edfa447bcab78bd7f12633f2917a3 https://www.encodeproject.org/files/ENCFF001XPT/@@download/ENCFF001XPT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001XPU bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIZ 597292 John Stamatoyannopoulos, UW 154cd03f8564b69afd2fab7b0e276f47 https://www.encodeproject.org/files/ENCFF001XPU/@@download/ENCFF001XPU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF002DCO bed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HIY, ENCFF001HIZ 986802 ENCODE Consortium Analysis Working Group 799bc6c3af731285c238b6574d7adfe2 https://www.encodeproject.org/files/ENCFF002DCO/@@download/ENCFF002DCO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF202KHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DCO 2077904 ENCODE Consortium 641ef9935b5c893b506d58ce78944008 https://www.encodeproject.org/files/ENCFF202KHC/@@download/ENCFF202KHC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF426LGK bam unfiltered alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJH, ENCFF643CGH 867179510 ENCODE Processing Pipeline a394facd52b6f257827d48c575d8eba6 https://www.encodeproject.org/files/ENCFF426LGK/@@download/ENCFF426LGK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF076NSO bam unfiltered alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HJI, ENCFF643CGH 725452398 ENCODE Processing Pipeline e9263a5e539e0342b3425d6738ae8b45 https://www.encodeproject.org/files/ENCFF076NSO/@@download/ENCFF076NSO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF282WQV bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJH, ENCFF643CGH 526502388 ENCODE Processing Pipeline 808f3dac635e97508f2d8c6e7c4395a9 https://www.encodeproject.org/files/ENCFF282WQV/@@download/ENCFF282WQV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF836ZOB bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HJI, ENCFF643CGH 478243744 ENCODE Processing Pipeline ecab631c0ef46e50c34961541cc1817f https://www.encodeproject.org/files/ENCFF836ZOB/@@download/ENCFF836ZOB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF644FRD bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HJI, ENCFF807MUK 478483874 ENCODE Processing Pipeline 85b19156ca6efaa26bd8381dc1328d5e https://www.encodeproject.org/files/ENCFF644FRD/@@download/ENCFF644FRD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF964TIJ bam unfiltered alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HJI, ENCFF807MUK 722971760 ENCODE Processing Pipeline fcd3d13888478dacc1643e135aec62f6 https://www.encodeproject.org/files/ENCFF964TIJ/@@download/ENCFF964TIJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF600BAG bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJH, ENCFF807MUK 526772337 ENCODE Processing Pipeline 184beb8013ad8ac5ee7ccb3096296527 https://www.encodeproject.org/files/ENCFF600BAG/@@download/ENCFF600BAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF712ONF bam unfiltered alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJH, ENCFF807MUK 865036476 ENCODE Processing Pipeline d236a6fb6831e7445837a3d7975e6211 https://www.encodeproject.org/files/ENCFF712ONF/@@download/ENCFF712ONF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF564NCZ bigWig signal p-value ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF336OEL, ENCFF836ZOB 485762526 ENCODE Processing Pipeline c39951ac70d44ae95b25d70ddc43fcf1 https://www.encodeproject.org/files/ENCFF564NCZ/@@download/ENCFF564NCZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF774BDE bigWig fold change over control ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF336OEL, ENCFF836ZOB 238770053 ENCODE Processing Pipeline 8cb8fde20d3f89b03027f33257f39900 https://www.encodeproject.org/files/ENCFF774BDE/@@download/ENCFF774BDE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF082THE bigWig fold change over control ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF282WQV, ENCFF336OEL 276314253 ENCODE Processing Pipeline 6f652ec6b4b44946b433fb259aba5f05 https://www.encodeproject.org/files/ENCFF082THE/@@download/ENCFF082THE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF546YTG bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF684QJY 11198152 ENCODE Processing Pipeline bc43c0a8f28890ef925cef009636070a https://www.encodeproject.org/files/ENCFF546YTG/@@download/ENCFF546YTG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF901WIK bigWig signal p-value ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF282WQV, ENCFF336OEL, ENCFF836ZOB 535850594 ENCODE Processing Pipeline ed4a1f76f6b7cab964fd7a167cef9446 https://www.encodeproject.org/files/ENCFF901WIK/@@download/ENCFF901WIK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF424JNY bigWig fold change over control ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF282WQV, ENCFF336OEL, ENCFF836ZOB 461778987 ENCODE Processing Pipeline b19b1cdf0d0d26e3e7a03e4f5abc62e0 https://www.encodeproject.org/files/ENCFF424JNY/@@download/ENCFF424JNY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF600CYD bed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF684QJY, ENCFF777LEG, ENCFF934HQC 774082 ENCODE Processing Pipeline fd2626ac100b0ba6310845b7279141f3 https://www.encodeproject.org/files/ENCFF600CYD/@@download/ENCFF600CYD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF441YZH bigWig signal p-value ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF282WQV, ENCFF336OEL 386133925 ENCODE Processing Pipeline 29bae889f0b5912ecff26922d9eb24e0 https://www.encodeproject.org/files/ENCFF441YZH/@@download/ENCFF441YZH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF777LEG bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF336OEL, ENCFF836ZOB 4170228 ENCODE Processing Pipeline 8edfc53b4aa11fcc23db79904e9f36ac https://www.encodeproject.org/files/ENCFF777LEG/@@download/ENCFF777LEG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF127IBX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF183YLB 1367335 ENCODE Processing Pipeline 96738c8e7141d09dd2ea02550b23ffcd https://www.encodeproject.org/files/ENCFF127IBX/@@download/ENCFF127IBX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF934HQC bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF282WQV, ENCFF336OEL 4123469 ENCODE Processing Pipeline 64904a140fa902d972e18307cde4cf57 https://www.encodeproject.org/files/ENCFF934HQC/@@download/ENCFF934HQC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF684QJY bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF282WQV, ENCFF336OEL, ENCFF836ZOB 4475215 ENCODE Processing Pipeline 2a794e215865e15e799ce6cdf497d713 https://www.encodeproject.org/files/ENCFF684QJY/@@download/ENCFF684QJY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF712ZFJ bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF777LEG 10500784 ENCODE Processing Pipeline 8fe549aea3cd53be3b49adb0328d99f0 https://www.encodeproject.org/files/ENCFF712ZFJ/@@download/ENCFF712ZFJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF900IIC bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF934HQC 10518206 ENCODE Processing Pipeline eb8216b10ab9f22d3ae83f25f747596d https://www.encodeproject.org/files/ENCFF900IIC/@@download/ENCFF900IIC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF183YLB bed narrowPeak conservative idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF684QJY, ENCFF777LEG, ENCFF934HQC 754900 ENCODE Processing Pipeline 243693669ba30f78534988f800b19fa5 https://www.encodeproject.org/files/ENCFF183YLB/@@download/ENCFF183YLB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF818SEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF600CYD 1392712 ENCODE Processing Pipeline 619f6e922cee17eca298293c87cee0a0 https://www.encodeproject.org/files/ENCFF818SEB/@@download/ENCFF818SEB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF535LDO bigWig signal p-value ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF600BAG, ENCFF644FRD, ENCFF686TPQ 536297105 ENCODE Processing Pipeline 152072cbb40c114c5baffcc01fac6cb5 https://www.encodeproject.org/files/ENCFF535LDO/@@download/ENCFF535LDO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF941RRH bigWig fold change over control ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF600BAG, ENCFF686TPQ 276471606 ENCODE Processing Pipeline 4a509503a148519702e5fd165822e00b https://www.encodeproject.org/files/ENCFF941RRH/@@download/ENCFF941RRH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF200FAM bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF892VYV 10516644 ENCODE Processing Pipeline 2972b81f6c93d8903406b987ff5ece29 https://www.encodeproject.org/files/ENCFF200FAM/@@download/ENCFF200FAM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF044YTP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF312HCK 1378668 ENCODE Processing Pipeline adfc7ead58b33d80355ca7a39c5b3cec https://www.encodeproject.org/files/ENCFF044YTP/@@download/ENCFF044YTP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF480FOQ bigWig fold change over control ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF644FRD, ENCFF686TPQ 237303045 ENCODE Processing Pipeline 2fe5a79e4e21dbb9cda7567005e1ac39 https://www.encodeproject.org/files/ENCFF480FOQ/@@download/ENCFF480FOQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF312HCK bed narrowPeak optimal idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF729AWY, ENCFF892VYV, ENCFF994JFX 765148 ENCODE Processing Pipeline 9dd0d6cf8e5d23c421e1eeffab57d9d4 https://www.encodeproject.org/files/ENCFF312HCK/@@download/ENCFF312HCK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF501ICU bigWig signal p-value ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF644FRD, ENCFF686TPQ 406407346 ENCODE Processing Pipeline 5f872d206ba509fca3aa8d9007e2aa9e https://www.encodeproject.org/files/ENCFF501ICU/@@download/ENCFF501ICU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF933ELB bigWig signal p-value ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF600BAG, ENCFF686TPQ 370236926 ENCODE Processing Pipeline 9dc510cf37430560f9f1619b3bfe0d69 https://www.encodeproject.org/files/ENCFF933ELB/@@download/ENCFF933ELB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF650VXS bigWig fold change over control ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF600BAG, ENCFF644FRD, ENCFF686TPQ 463178632 ENCODE Processing Pipeline 910e32e31b5c4c3dd7a9bc5c632001e3 https://www.encodeproject.org/files/ENCFF650VXS/@@download/ENCFF650VXS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF729AWY bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF644FRD, ENCFF686TPQ 4174778 ENCODE Processing Pipeline ace2ec52cf2dfa4692feb164ebf7958a https://www.encodeproject.org/files/ENCFF729AWY/@@download/ENCFF729AWY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF994JFX bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF600BAG, ENCFF644FRD, ENCFF686TPQ 4476308 ENCODE Processing Pipeline 75b0297b5c49cec15ede77be88ed6d07 https://www.encodeproject.org/files/ENCFF994JFX/@@download/ENCFF994JFX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF281YUR bigBed narrowPeak conservative idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF787GLH 1364991 ENCODE Processing Pipeline 53d343d48354575bb2b82555566532f6 https://www.encodeproject.org/files/ENCFF281YUR/@@download/ENCFF281YUR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF892VYV bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF600BAG, ENCFF686TPQ 4129203 ENCODE Processing Pipeline 02dc4390a46ee6a4603e44c91ca1a5b8 https://www.encodeproject.org/files/ENCFF892VYV/@@download/ENCFF892VYV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF787GLH bed narrowPeak conservative idr thresholded peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF729AWY, ENCFF892VYV, ENCFF994JFX 753709 ENCODE Processing Pipeline beae2e60b294f0835e5ec9ef8d50968f https://www.encodeproject.org/files/ENCFF787GLH/@@download/ENCFF787GLH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF258EJF bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF729AWY 10504578 ENCODE Processing Pipeline a389192e2c333b27fea2c6d788d4e976 https://www.encodeproject.org/files/ENCFF258EJF/@@download/ENCFF258EJF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF517VPW bigBed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF994JFX 11190515 ENCODE Processing Pipeline 5fc6b057c227833e1af6c1cabad5717f https://www.encodeproject.org/files/ENCFF517VPW/@@download/ENCFF517VPW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000YZI bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YZX 229362211 Michael Snyder, Stanford 6d60a3ee75f878f24d4b94e59706822a https://www.encodeproject.org/files/ENCFF000YZI/@@download/ENCFF000YZI.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YZK bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOT 1822902 Michael Snyder, Stanford f55127e00a6c09e183b7d9d516df6de0 https://www.encodeproject.org/files/ENCFF000YZK/@@download/ENCFF000YZK.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YZL bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YZY 278599432 Michael Snyder, Stanford 8bca40db86927fffdbf149c369d83065 https://www.encodeproject.org/files/ENCFF000YZL/@@download/ENCFF000YZL.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YZM bigWig signal ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 244396992 Michael Snyder, Stanford b6086105790c29856f74513d46a48d27 https://www.encodeproject.org/files/ENCFF000YZM/@@download/ENCFF000YZM.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YZX fastq reads ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 440276086 Michael Snyder, Stanford c1a48c3caf3541508e214dc552e38d64 https://www.encodeproject.org/files/ENCFF000YZX/@@download/ENCFF000YZX.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YZY fastq reads ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 522032383 Michael Snyder, Stanford ef0d2b86c106ca8dd654b3e8a92a43ec https://www.encodeproject.org/files/ENCFF000YZY/@@download/ENCFF000YZY.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001VOT bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 771829 Michael Snyder, Stanford a72c84f021798c44d11750ea7679ffbf https://www.encodeproject.org/files/ENCFF001VOT/@@download/ENCFF001VOT.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CYA bed narrowPeak optimal idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 539320 ENCODE Consortium Analysis Working Group 95bc0f5d20a06647d0aaa79420ee0dc4 https://www.encodeproject.org/files/ENCFF002CYA/@@download/ENCFF002CYA.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF695EAS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYA 1101589 ENCODE Consortium ab97ade646be1b90d6056ae8852d3318 https://www.encodeproject.org/files/ENCFF695EAS/@@download/ENCFF695EAS.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF355PQK bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YZX, ENCFF643CGH 358269351 ENCODE Processing Pipeline c701136f2a96b9dbc346fd11939c841e https://www.encodeproject.org/files/ENCFF355PQK/@@download/ENCFF355PQK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF353WBI bam unfiltered alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YZX, ENCFF643CGH 556396325 ENCODE Processing Pipeline 9993b9dfd4ea579fc858529882e64d6f https://www.encodeproject.org/files/ENCFF353WBI/@@download/ENCFF353WBI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF365BCR bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YZY, ENCFF643CGH 443640502 ENCODE Processing Pipeline a48aa486a33c1344117443ac715c76ab https://www.encodeproject.org/files/ENCFF365BCR/@@download/ENCFF365BCR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF271XMG bam unfiltered alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YZY, ENCFF643CGH 651133461 ENCODE Processing Pipeline dba042a85740fc4d55680ae15ac6760b https://www.encodeproject.org/files/ENCFF271XMG/@@download/ENCFF271XMG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF762TSN bam unfiltered alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YZY, ENCFF807MUK 648346500 ENCODE Processing Pipeline cce613507eb57d425c2f9c3edef63ad2 https://www.encodeproject.org/files/ENCFF762TSN/@@download/ENCFF762TSN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF359UWD bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YZX, ENCFF807MUK 358598104 ENCODE Processing Pipeline 8b698d83db0f9f6187e6aaeb3e097c77 https://www.encodeproject.org/files/ENCFF359UWD/@@download/ENCFF359UWD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF013ESF bam unfiltered alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YZX, ENCFF807MUK 554125195 ENCODE Processing Pipeline 40723c878cbd1da52e3f69567f52d8cb https://www.encodeproject.org/files/ENCFF013ESF/@@download/ENCFF013ESF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF845WVY bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YZY, ENCFF807MUK 443970675 ENCODE Processing Pipeline 1476bc4c93496a9f50f06dd5c9f1f44f https://www.encodeproject.org/files/ENCFF845WVY/@@download/ENCFF845WVY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF199YLO bigWig signal p-value ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF355PQK 347039296 ENCODE Processing Pipeline 017452f7a6523d6093047cb7ad87d01f https://www.encodeproject.org/files/ENCFF199YLO/@@download/ENCFF199YLO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF067OLL bigWig signal p-value ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF355PQK, ENCFF365BCR 448957496 ENCODE Processing Pipeline 1c7680472e49ae76e7a0de6fecbfff62 https://www.encodeproject.org/files/ENCFF067OLL/@@download/ENCFF067OLL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF790SCG bigWig signal p-value ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF365BCR 428731657 ENCODE Processing Pipeline 09a03cbcd52e81b05a2329bfacad0d5c https://www.encodeproject.org/files/ENCFF790SCG/@@download/ENCFF790SCG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF635FNY bigWig fold change over control ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF355PQK 208280833 ENCODE Processing Pipeline ab86f7bbcc4055eca02378142b04b373 https://www.encodeproject.org/files/ENCFF635FNY/@@download/ENCFF635FNY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF387DUZ bigWig fold change over control ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF355PQK, ENCFF365BCR 407896907 ENCODE Processing Pipeline 90720d417954bb81e16d6b76f566f86a https://www.encodeproject.org/files/ENCFF387DUZ/@@download/ENCFF387DUZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF797HNK bigWig fold change over control ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF365BCR 251219624 ENCODE Processing Pipeline 5fa455bd301744ff096c4e6381cc2443 https://www.encodeproject.org/files/ENCFF797HNK/@@download/ENCFF797HNK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF565ATC bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF995RPX 8882759 ENCODE Processing Pipeline aace5bc1078b37199d72f3fefdde4ed6 https://www.encodeproject.org/files/ENCFF565ATC/@@download/ENCFF565ATC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF721SRJ bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF365BCR 4299042 ENCODE Processing Pipeline 8d4bbeb45a99af567455f4da994b04e5 https://www.encodeproject.org/files/ENCFF721SRJ/@@download/ENCFF721SRJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF995RPX bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF355PQK 3696739 ENCODE Processing Pipeline 7e8ff814648709abaf90c0c0b7e234ac https://www.encodeproject.org/files/ENCFF995RPX/@@download/ENCFF995RPX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF151QJM bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF355PQK, ENCFF365BCR 4804647 ENCODE Processing Pipeline 111db4e634d317fba0756ac2325159ab https://www.encodeproject.org/files/ENCFF151QJM/@@download/ENCFF151QJM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF662LUH bed narrowPeak conservative idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF151QJM, ENCFF419RSJ, ENCFF721SRJ, ENCFF995RPX 442869 ENCODE Processing Pipeline fc88b324e2fe8080ad2b30b605fb8e8b https://www.encodeproject.org/files/ENCFF662LUH/@@download/ENCFF662LUH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF278VOA bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF721SRJ 10288188 ENCODE Processing Pipeline 082d837d8a38e865d59702e3511d6f51 https://www.encodeproject.org/files/ENCFF278VOA/@@download/ENCFF278VOA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF046YJD bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF151QJM 10969900 ENCODE Processing Pipeline 85b8afec82bcdf08eb4aa2a1af7c205b https://www.encodeproject.org/files/ENCFF046YJD/@@download/ENCFF046YJD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF339LVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF175UEE 828848 ENCODE Processing Pipeline 8546205857adb8f8701e4677f0befc83 https://www.encodeproject.org/files/ENCFF339LVM/@@download/ENCFF339LVM.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF175UEE bed narrowPeak optimal idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF151QJM, ENCFF419RSJ, ENCFF721SRJ, ENCFF995RPX 451497 ENCODE Processing Pipeline 4dd98262b2cba021b22620f40fbb0ad5 https://www.encodeproject.org/files/ENCFF175UEE/@@download/ENCFF175UEE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF045XJJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF662LUH 817462 ENCODE Processing Pipeline 8382d2974992b380f89f1a3dfc3064e3 https://www.encodeproject.org/files/ENCFF045XJJ/@@download/ENCFF045XJJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF653RFT bigWig signal p-value ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF359UWD, ENCFF710NTS 455157613 ENCODE Processing Pipeline 65fc1ac49aa94e93ec9e56a81fc7acb5 https://www.encodeproject.org/files/ENCFF653RFT/@@download/ENCFF653RFT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF253VJL bigWig fold change over control ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF359UWD, ENCFF710NTS 213302448 ENCODE Processing Pipeline c458f616ef1f020e74f9dba67a8b5352 https://www.encodeproject.org/files/ENCFF253VJL/@@download/ENCFF253VJL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF981HFS bigWig signal p-value ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF845WVY 362343155 ENCODE Processing Pipeline d79a3a15074bbd8a3b01d3958cd3c2f1 https://www.encodeproject.org/files/ENCFF981HFS/@@download/ENCFF981HFS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF647UOK bigWig signal p-value ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359UWD, ENCFF710NTS, ENCFF845WVY 485849460 ENCODE Processing Pipeline 995c083ce38fb5a5d4c003f022a71f30 https://www.encodeproject.org/files/ENCFF647UOK/@@download/ENCFF647UOK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF003UFU bigWig fold change over control ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF845WVY 251378690 ENCODE Processing Pipeline d1b1d2eeb4ed0b35d52a1111fd87d29c https://www.encodeproject.org/files/ENCFF003UFU/@@download/ENCFF003UFU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF041YJV bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF845WVY 4305604 ENCODE Processing Pipeline 2371b94b7137fd7a56b567acc2631c85 https://www.encodeproject.org/files/ENCFF041YJV/@@download/ENCFF041YJV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF197FVX bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF041YJV 10289374 ENCODE Processing Pipeline b34aaf64b2c3c75541393ca09095a58e https://www.encodeproject.org/files/ENCFF197FVX/@@download/ENCFF197FVX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF483CZB bed narrowPeak conservative idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF041YJV, ENCFF714FTS, ENCFF892UIH 442270 ENCODE Processing Pipeline 734af70c087e70baf325717f3195035e https://www.encodeproject.org/files/ENCFF483CZB/@@download/ENCFF483CZB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF011ZYD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF483CZB 815386 ENCODE Processing Pipeline 2a10422a60e4e22b5dabd6bcf93bc595 https://www.encodeproject.org/files/ENCFF011ZYD/@@download/ENCFF011ZYD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF513GCD bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF892UIH 10959221 ENCODE Processing Pipeline 228130b9ac1057e7ee2c1ac831a15838 https://www.encodeproject.org/files/ENCFF513GCD/@@download/ENCFF513GCD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF041YQC bed narrowPeak optimal idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF041YJV, ENCFF714FTS, ENCFF892UIH 454792 ENCODE Processing Pipeline 2933d00ffe16c0f6bdc6e17cf2aa672e https://www.encodeproject.org/files/ENCFF041YQC/@@download/ENCFF041YQC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF479BWQ bigWig fold change over control ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359UWD, ENCFF710NTS, ENCFF845WVY 416013078 ENCODE Processing Pipeline 7083596aa04bb3bd461d2ba7e324ca6c https://www.encodeproject.org/files/ENCFF479BWQ/@@download/ENCFF479BWQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF714FTS bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF359UWD, ENCFF710NTS 3707352 ENCODE Processing Pipeline 0a5fdaca0482075d611610ccfc931034 https://www.encodeproject.org/files/ENCFF714FTS/@@download/ENCFF714FTS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF892UIH bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359UWD, ENCFF710NTS, ENCFF845WVY 4807747 ENCODE Processing Pipeline afdb46ca0c625d0fd83de406cc138592 https://www.encodeproject.org/files/ENCFF892UIH/@@download/ENCFF892UIH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF656AKL bigBed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF714FTS 8886512 ENCODE Processing Pipeline 2be3996a1925875a7202c0a18ddd9f2b https://www.encodeproject.org/files/ENCFF656AKL/@@download/ENCFF656AKL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF441IDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF041YQC 833281 ENCODE Processing Pipeline 245f9c4225d4d9d7886c048b81f85cb7 https://www.encodeproject.org/files/ENCFF441IDR/@@download/ENCFF441IDR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF672NIZ fastq reads ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 1 ENCFF513NXC 2314860984 Michael Snyder, Stanford 57c80bcb76281fed346d72676e10ccfa SRA:SRR6214001 https://www.encodeproject.org/files/ENCFF672NIZ/@@download/ENCFF672NIZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released low read depth ENCFF513NXC fastq reads ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 1 100 paired-ended 2 ENCFF672NIZ 2399791595 Michael Snyder, Stanford d25ef761c88bb5a423e94cdb30eef956 SRA:SRR6214001 https://www.encodeproject.org/files/ENCFF513NXC/@@download/ENCFF513NXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released low read depth ENCFF499ADG fastq reads ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 1 ENCFF005PFF 2743712592 Michael Snyder, Stanford aedda9fcc8dc605181e4c107f23156bc SRA:SRR6214002 https://www.encodeproject.org/files/ENCFF499ADG/@@download/ENCFF499ADG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released low read depth ENCFF005PFF fastq reads ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 1 100 paired-ended 2 ENCFF499ADG 2812837110 Michael Snyder, Stanford 52a0ad66cd97f4e18ab13c566521b417 SRA:SRR6214002 https://www.encodeproject.org/files/ENCFF005PFF/@@download/ENCFF005PFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released low read depth ENCFF591WCM bam unfiltered alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF513NXC, ENCFF672NIZ, ENCFF807MUK 5119161561 ENCODE Processing Pipeline aeae5c5c08a89b640d2ddc1b9bc4d862 https://www.encodeproject.org/files/ENCFF591WCM/@@download/ENCFF591WCM.bam hg19 released low read depth ENCFF383RGH bam unfiltered alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF513NXC, ENCFF643CGH, ENCFF672NIZ 5120638639 ENCODE Processing Pipeline defcd79acd1be6091f844f1897dc31f1 https://www.encodeproject.org/files/ENCFF383RGH/@@download/ENCFF383RGH.bam GRCh38 released low read depth ENCFF828ZBV bam unfiltered alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF005PFF, ENCFF499ADG, ENCFF643CGH 6064308130 ENCODE Processing Pipeline 7fa5cc9e9d71ef835992c1411ec4f1e4 https://www.encodeproject.org/files/ENCFF828ZBV/@@download/ENCFF828ZBV.bam GRCh38 released low read depth ENCFF640KEQ bam unfiltered alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF005PFF, ENCFF499ADG, ENCFF807MUK 6060451398 ENCODE Processing Pipeline 473307604dbf7c50330d73ad2d904031 https://www.encodeproject.org/files/ENCFF640KEQ/@@download/ENCFF640KEQ.bam hg19 released low read depth ENCFF229VMU bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF005PFF, ENCFF499ADG, ENCFF643CGH 4744141691 ENCODE Processing Pipeline 9acc50e697b2451285f72e63758232c7 https://www.encodeproject.org/files/ENCFF229VMU/@@download/ENCFF229VMU.bam GRCh38 released low read depth ENCFF134HTY bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF513NXC, ENCFF672NIZ, ENCFF807MUK 3706560681 ENCODE Processing Pipeline 5f051d201019b9932c94b120dbba4d75 https://www.encodeproject.org/files/ENCFF134HTY/@@download/ENCFF134HTY.bam hg19 released low read depth ENCFF802CIM bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF513NXC, ENCFF643CGH, ENCFF672NIZ 3709998175 ENCODE Processing Pipeline a2b95e968a163c517143752817db5f75 https://www.encodeproject.org/files/ENCFF802CIM/@@download/ENCFF802CIM.bam GRCh38 released low read depth ENCFF518TII bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF005PFF, ENCFF499ADG, ENCFF807MUK 4740574128 ENCODE Processing Pipeline f882fef081b87eb3baf64940ce105b95 https://www.encodeproject.org/files/ENCFF518TII/@@download/ENCFF518TII.bam hg19 released low read depth ENCFF804DGH bigWig signal p-value ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF518TII, ENCFF581ZJL 1216200582 ENCODE Processing Pipeline 3f764014f507af05f408e554fa679c61 https://www.encodeproject.org/files/ENCFF804DGH/@@download/ENCFF804DGH.bigWig hg19 released low read depth ENCFF339BHB bigWig signal p-value ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF134HTY 1098052161 ENCODE Processing Pipeline 140041942090fec42bc0a2372804688d https://www.encodeproject.org/files/ENCFF339BHB/@@download/ENCFF339BHB.bigWig hg19 released low read depth ENCFF774DDH bigWig signal p-value ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF134HTY, ENCFF518TII, ENCFF581ZJL 1963013717 ENCODE Processing Pipeline 4e46109b71e6aea499b51ad7cd515470 https://www.encodeproject.org/files/ENCFF774DDH/@@download/ENCFF774DDH.bigWig hg19 released low read depth ENCFF989IJR bigWig fold change over control ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF518TII, ENCFF581ZJL 1228064271 ENCODE Processing Pipeline a93c0557bbe7c15578805faea73d27d3 https://www.encodeproject.org/files/ENCFF989IJR/@@download/ENCFF989IJR.bigWig hg19 released low read depth ENCFF265BZV bigWig fold change over control ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF134HTY 991188031 ENCODE Processing Pipeline 1e834ba61ced4b3469ba5ade76fe80a9 https://www.encodeproject.org/files/ENCFF265BZV/@@download/ENCFF265BZV.bigWig hg19 released low read depth ENCFF508MDN bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF518TII, ENCFF581ZJL 6690900 ENCODE Processing Pipeline 04bd69cb516b2ca5310ee105263c240d https://www.encodeproject.org/files/ENCFF508MDN/@@download/ENCFF508MDN.bed.gz hg19 released low read depth ENCFF044DKD bigBed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF508MDN 13229236 ENCODE Processing Pipeline 02df47f0a73237d150e8a5f1c2590d7d https://www.encodeproject.org/files/ENCFF044DKD/@@download/ENCFF044DKD.bigBed hg19 released low read depth ENCFF505XYY bed narrowPeak conservative idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF231LOJ, ENCFF370RBU, ENCFF508MDN 90306 ENCODE Processing Pipeline ba8c797d9cd4eb7d4d8f76fe9d65c0ae https://www.encodeproject.org/files/ENCFF505XYY/@@download/ENCFF505XYY.bed.gz hg19 released low read depth ENCFF231LOJ bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF134HTY, ENCFF518TII, ENCFF581ZJL 7221782 ENCODE Processing Pipeline 7ae8cbc53fa189cbfe53de27f75f9909 https://www.encodeproject.org/files/ENCFF231LOJ/@@download/ENCFF231LOJ.bed.gz hg19 released low read depth ENCFF277SXW bigBed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF231LOJ 13114422 ENCODE Processing Pipeline 98b083af30931cc4794b0f1f650e47cc https://www.encodeproject.org/files/ENCFF277SXW/@@download/ENCFF277SXW.bigBed hg19 released low read depth ENCFF462FRU bed narrowPeak optimal idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF001TDO, ENCFF231LOJ, ENCFF370RBU, ENCFF508MDN 140167 ENCODE Processing Pipeline 1426f48c300e84e812d6c2bc81cb4162 https://www.encodeproject.org/files/ENCFF462FRU/@@download/ENCFF462FRU.bed.gz hg19 released low read depth ENCFF149FPK bigBed narrowPeak optimal idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF462FRU 309946 ENCODE Processing Pipeline d224c44356394f2c12b52643de2ee2fd https://www.encodeproject.org/files/ENCFF149FPK/@@download/ENCFF149FPK.bigBed hg19 released low read depth ENCFF776ZKG bigWig fold change over control ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF134HTY, ENCFF518TII, ENCFF581ZJL 2060028257 ENCODE Processing Pipeline a4efc591e066ec320ff57486f612459a https://www.encodeproject.org/files/ENCFF776ZKG/@@download/ENCFF776ZKG.bigWig hg19 released low read depth ENCFF370RBU bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF134HTY 6668633 ENCODE Processing Pipeline 508447dc5f2ece5fee0b0816bac0d5c7 https://www.encodeproject.org/files/ENCFF370RBU/@@download/ENCFF370RBU.bed.gz hg19 released low read depth ENCFF418ORJ bigBed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF370RBU 13239043 ENCODE Processing Pipeline f145f1e867b2211b93a32712e45bd52d https://www.encodeproject.org/files/ENCFF418ORJ/@@download/ENCFF418ORJ.bigBed hg19 released low read depth ENCFF470LCU bigBed narrowPeak conservative idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF505XYY 234987 ENCODE Processing Pipeline 457f2be02ed4e454fb54bf8d116fc1f2 https://www.encodeproject.org/files/ENCFF470LCU/@@download/ENCFF470LCU.bigBed hg19 released low read depth ENCFF565PXY bigWig signal p-value ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF229VMU, ENCFF910IKB 1285420980 ENCODE Processing Pipeline d9c7abfe55c09d26104078a5727150b0 https://www.encodeproject.org/files/ENCFF565PXY/@@download/ENCFF565PXY.bigWig GRCh38 released low read depth ENCFF423QHE bigWig signal p-value ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF802CIM 1023511874 ENCODE Processing Pipeline 66fbfdaeea8ee37bbc88752fd3da3386 https://www.encodeproject.org/files/ENCFF423QHE/@@download/ENCFF423QHE.bigWig GRCh38 released low read depth ENCFF271NTC bigWig signal p-value ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF227IZS, ENCFF229VMU, ENCFF802CIM, ENCFF910IKB 1835987945 ENCODE Processing Pipeline 1632181c6cae889faf62282631e1bc66 https://www.encodeproject.org/files/ENCFF271NTC/@@download/ENCFF271NTC.bigWig GRCh38 released low read depth ENCFF827RID bigWig fold change over control ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF229VMU, ENCFF910IKB 1249100710 ENCODE Processing Pipeline 741865b4bce09f7125a094017c114dfa https://www.encodeproject.org/files/ENCFF827RID/@@download/ENCFF827RID.bigWig GRCh38 released low read depth ENCFF465MBL bigWig fold change over control ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF802CIM 1016906673 ENCODE Processing Pipeline f5c01ee0b26ece024afd12e0d8438b22 https://www.encodeproject.org/files/ENCFF465MBL/@@download/ENCFF465MBL.bigWig GRCh38 released low read depth ENCFF539UUP bigWig fold change over control ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF227IZS, ENCFF229VMU, ENCFF802CIM, ENCFF910IKB 2060400364 ENCODE Processing Pipeline 5895110ffd6c38e812b4a4a0d7254fda https://www.encodeproject.org/files/ENCFF539UUP/@@download/ENCFF539UUP.bigWig GRCh38 released low read depth ENCFF460KXU bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF229VMU, ENCFF910IKB 6559854 ENCODE Processing Pipeline d5c43ac0583934baf38c2668a9ac59ab https://www.encodeproject.org/files/ENCFF460KXU/@@download/ENCFF460KXU.bed.gz GRCh38 released low read depth ENCFF004DDR bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF227IZS, ENCFF802CIM 6486265 ENCODE Processing Pipeline 950043a6f5ce35dfb7dabf5ef9a8112d https://www.encodeproject.org/files/ENCFF004DDR/@@download/ENCFF004DDR.bed.gz GRCh38 released low read depth ENCFF417RJF bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF227IZS, ENCFF229VMU, ENCFF802CIM, ENCFF910IKB 7197461 ENCODE Processing Pipeline 1185fef69c066d37829c4115ce75ec24 https://www.encodeproject.org/files/ENCFF417RJF/@@download/ENCFF417RJF.bed.gz GRCh38 released low read depth ENCFF052UGB bigBed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF460KXU 13237075 ENCODE Processing Pipeline 561fce5ccc7290de4f83246a05c30378 https://www.encodeproject.org/files/ENCFF052UGB/@@download/ENCFF052UGB.bigBed GRCh38 released low read depth ENCFF682ELN bigBed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF004DDR 13249317 ENCODE Processing Pipeline 7ebc1dc9bde08ed43f1dcde30adf4c52 https://www.encodeproject.org/files/ENCFF682ELN/@@download/ENCFF682ELN.bigBed GRCh38 released low read depth ENCFF400UZP bigBed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF417RJF 13120843 ENCODE Processing Pipeline 102c895f93eb32f06dd937badb967761 https://www.encodeproject.org/files/ENCFF400UZP/@@download/ENCFF400UZP.bigBed GRCh38 released low read depth ENCFF028CLF bigBed narrowPeak conservative idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF111EXG 235116 ENCODE Processing Pipeline 7d53579d4cf7e1ccde6f06bb2af26dd0 https://www.encodeproject.org/files/ENCFF028CLF/@@download/ENCFF028CLF.bigBed GRCh38 released low read depth ENCFF988OXX bed narrowPeak optimal idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF004DDR, ENCFF417RJF, ENCFF419RSJ, ENCFF460KXU 134417 ENCODE Processing Pipeline 5c57af4ee5d1b18dd20c07695adbcf98 https://www.encodeproject.org/files/ENCFF988OXX/@@download/ENCFF988OXX.bed.gz GRCh38 released low read depth ENCFF111EXG bed narrowPeak conservative idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF004DDR, ENCFF417RJF, ENCFF419RSJ, ENCFF460KXU 89302 ENCODE Processing Pipeline 322741a82aca469029f5129e9f70f9f0 https://www.encodeproject.org/files/ENCFF111EXG/@@download/ENCFF111EXG.bed.gz GRCh38 released low read depth ENCFF776XQD bigBed narrowPeak optimal idr thresholded peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1, 2 ENCFF988OXX 303725 ENCODE Processing Pipeline f812c5944bf86baaa9429facc9962442 https://www.encodeproject.org/files/ENCFF776XQD/@@download/ENCFF776XQD.bigBed GRCh38 released low read depth ENCFF886RND bam unfiltered alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 100 ENCFF310JLM, ENCFF670FTR, ENCFF807MUK 5480734683 ENCODE Processing Pipeline 7cbd3ebf8922f3a71acf421350970dda https://www.encodeproject.org/files/ENCFF886RND/@@download/ENCFF886RND.bam hg19 released ENCFF594IAQ bam unfiltered alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 100 ENCFF444MWP, ENCFF793GYQ, ENCFF807MUK 4327124767 ENCODE Processing Pipeline 0b8bb628d4c3f0007bce1984ce547751 https://www.encodeproject.org/files/ENCFF594IAQ/@@download/ENCFF594IAQ.bam hg19 released ENCFF444MWP fastq reads ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF793GYQ 2056308832 Michael Snyder, Stanford 3460af208d9ea7dc2e20d83be6568c55 SRA:SRR5111824 https://www.encodeproject.org/files/ENCFF444MWP/@@download/ENCFF444MWP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF793GYQ fastq reads ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF444MWP 2012078674 Michael Snyder, Stanford ce1d9665a2961c95b391bbf2c56c4d44 SRA:SRR5111824 https://www.encodeproject.org/files/ENCFF793GYQ/@@download/ENCFF793GYQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF310JLM fastq reads ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF670FTR 2525503627 Michael Snyder, Stanford 06d1e913b59c7dc6c5409a271227c205 SRA:SRR5111823 https://www.encodeproject.org/files/ENCFF310JLM/@@download/ENCFF310JLM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF670FTR fastq reads ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF310JLM 2567340075 Michael Snyder, Stanford 81d71e817186094654e54d668eeb1a2d SRA:SRR5111823 https://www.encodeproject.org/files/ENCFF670FTR/@@download/ENCFF670FTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF620XKU bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 100 ENCFF310JLM, ENCFF670FTR, ENCFF807MUK 4677992197 ENCODE Processing Pipeline 8f9a227ce782a30192d7d2f3b95b4618 https://www.encodeproject.org/files/ENCFF620XKU/@@download/ENCFF620XKU.bam hg19 released ENCFF676EUR bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 100 ENCFF444MWP, ENCFF793GYQ, ENCFF807MUK 3573168723 ENCODE Processing Pipeline 2bf8ad7ca019beb129d1f774f03044ef https://www.encodeproject.org/files/ENCFF676EUR/@@download/ENCFF676EUR.bam hg19 released ENCFF220ZHN bigWig signal p-value ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF620XKU, ENCFF676EUR 1656341898 ENCODE Processing Pipeline da2a222f480106321604b70ae7b3397a https://www.encodeproject.org/files/ENCFF220ZHN/@@download/ENCFF220ZHN.bigWig hg19 released ENCFF748JPG bigWig fold change over control ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF620XKU, ENCFF676EUR 2059217437 ENCODE Processing Pipeline 8887112c5ea009678a91dd0f25afa80b https://www.encodeproject.org/files/ENCFF748JPG/@@download/ENCFF748JPG.bigWig hg19 released ENCFF286YAW bam unfiltered alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 100 ENCFF444MWP, ENCFF643CGH, ENCFF793GYQ 4330051606 ENCODE Processing Pipeline 3d8638ffbee928fa31b900078d610deb https://www.encodeproject.org/files/ENCFF286YAW/@@download/ENCFF286YAW.bam GRCh38 released ENCFF936WLL bam unfiltered alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 100 ENCFF310JLM, ENCFF643CGH, ENCFF670FTR 5485134888 ENCODE Processing Pipeline 45f4f32f0575c465bb34c505e6673044 https://www.encodeproject.org/files/ENCFF936WLL/@@download/ENCFF936WLL.bam GRCh38 released ENCFF350FCE bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 100 ENCFF444MWP, ENCFF643CGH, ENCFF793GYQ 3574860575 ENCODE Processing Pipeline 121823fa155c51433f0af9d15ca3db89 https://www.encodeproject.org/files/ENCFF350FCE/@@download/ENCFF350FCE.bam GRCh38 released ENCFF744TCZ bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 100 ENCFF310JLM, ENCFF643CGH, ENCFF670FTR 4680689869 ENCODE Processing Pipeline f85e9ee671c58d74bf83425fd2668a08 https://www.encodeproject.org/files/ENCFF744TCZ/@@download/ENCFF744TCZ.bam GRCh38 released ENCFF739DYQ bigWig signal p-value ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF350FCE, ENCFF910IKB 1139830681 ENCODE Processing Pipeline 719506dbf6fa35183090fda3518b9d3c https://www.encodeproject.org/files/ENCFF739DYQ/@@download/ENCFF739DYQ.bigWig GRCh38 released ENCFF533AHV bigWig signal p-value ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF744TCZ 1066980471 ENCODE Processing Pipeline 19e72be5aabd4926d70b2d9b06a402b2 https://www.encodeproject.org/files/ENCFF533AHV/@@download/ENCFF533AHV.bigWig GRCh38 released ENCFF260JRT bigWig signal p-value ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF350FCE, ENCFF744TCZ, ENCFF910IKB 1691960416 ENCODE Processing Pipeline 475e22db0803082f49c3b8822331e087 https://www.encodeproject.org/files/ENCFF260JRT/@@download/ENCFF260JRT.bigWig GRCh38 released ENCFF621PSE bigWig fold change over control ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF350FCE, ENCFF910IKB 1060262234 ENCODE Processing Pipeline 873446524ea14ea70c858a1999a15cf1 https://www.encodeproject.org/files/ENCFF621PSE/@@download/ENCFF621PSE.bigWig GRCh38 released ENCFF112ERN bigWig fold change over control ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF744TCZ 1166971631 ENCODE Processing Pipeline 566639dd69955bbcfef882b9c3d7fd8b https://www.encodeproject.org/files/ENCFF112ERN/@@download/ENCFF112ERN.bigWig GRCh38 released ENCFF118DJE bigWig fold change over control ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF350FCE, ENCFF744TCZ, ENCFF910IKB 2059829337 ENCODE Processing Pipeline 3fc2d88c415a19313427d760c5973c33 https://www.encodeproject.org/files/ENCFF118DJE/@@download/ENCFF118DJE.bigWig GRCh38 released ENCFF908VVI bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF350FCE, ENCFF910IKB 7006298 ENCODE Processing Pipeline d314d08440081fb1b73adc5a24b84d80 https://www.encodeproject.org/files/ENCFF908VVI/@@download/ENCFF908VVI.bed.gz GRCh38 released ENCFF045ANV bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF744TCZ 7062210 ENCODE Processing Pipeline d347a190a73f6fb5b2224a64bb9720d3 https://www.encodeproject.org/files/ENCFF045ANV/@@download/ENCFF045ANV.bed.gz GRCh38 released ENCFF680GSE bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF350FCE, ENCFF744TCZ, ENCFF910IKB 7172777 ENCODE Processing Pipeline 1b367799eb3963396e96b274e06ebf21 https://www.encodeproject.org/files/ENCFF680GSE/@@download/ENCFF680GSE.bed.gz GRCh38 released ENCFF873BHG bigBed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF908VVI 12814340 ENCODE Processing Pipeline 6310d4c79d713c55e6fea35bddfdd254 https://www.encodeproject.org/files/ENCFF873BHG/@@download/ENCFF873BHG.bigBed GRCh38 released ENCFF764PGG bigBed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF045ANV 12979767 ENCODE Processing Pipeline d1258c814f46c7ec39117dcae5103d25 https://www.encodeproject.org/files/ENCFF764PGG/@@download/ENCFF764PGG.bigBed GRCh38 released ENCFF739TBM bigBed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF680GSE 12773182 ENCODE Processing Pipeline 5e7fe17cda664e78b362381baf80c8ac https://www.encodeproject.org/files/ENCFF739TBM/@@download/ENCFF739TBM.bigBed GRCh38 released ENCFF333IXA bed narrowPeak conservative idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF045ANV, ENCFF419RSJ, ENCFF680GSE, ENCFF908VVI 542406 ENCODE Processing Pipeline 3a3930a6bff606bc1bac5b4bfdbcc13b https://www.encodeproject.org/files/ENCFF333IXA/@@download/ENCFF333IXA.bed.gz GRCh38 released ENCFF683SUK bigBed narrowPeak conservative idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF333IXA 1075087 ENCODE Processing Pipeline dea01bfa1fa28a5fdb7e0d2410c78c53 https://www.encodeproject.org/files/ENCFF683SUK/@@download/ENCFF683SUK.bigBed GRCh38 released ENCFF868UOJ bed narrowPeak optimal idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF045ANV, ENCFF419RSJ, ENCFF680GSE, ENCFF908VVI 721619 ENCODE Processing Pipeline 63d768a026e5098724274b19f13558e2 https://www.encodeproject.org/files/ENCFF868UOJ/@@download/ENCFF868UOJ.bed.gz GRCh38 released ENCFF971PID bigBed narrowPeak optimal idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF868UOJ 1339734 ENCODE Processing Pipeline 9588ab7775ca04017b0f0c1eced5b746 https://www.encodeproject.org/files/ENCFF971PID/@@download/ENCFF971PID.bigBed GRCh38 released ENCFF840RLL bigWig fold change over control ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF676EUR 1029700001 ENCODE Processing Pipeline c35f2959062473f121eb898e69e187dd https://www.encodeproject.org/files/ENCFF840RLL/@@download/ENCFF840RLL.bigWig hg19 released ENCFF399WUT bigWig signal p-value ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF620XKU 1009338209 ENCODE Processing Pipeline 78d3a3bddb1179c9208b114cabab6d39 https://www.encodeproject.org/files/ENCFF399WUT/@@download/ENCFF399WUT.bigWig hg19 released ENCFF883TOD bed narrowPeak optimal idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF513IHI, ENCFF541RTC, ENCFF891UIQ 747434 ENCODE Processing Pipeline cec784262d95b72f7a8d5f021ea99398 https://www.encodeproject.org/files/ENCFF883TOD/@@download/ENCFF883TOD.bed.gz hg19 released ENCFF485CTB bigWig signal p-value ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF676EUR 990418018 ENCODE Processing Pipeline 1a45ba8bf8142026e845dc59ecb99d7a https://www.encodeproject.org/files/ENCFF485CTB/@@download/ENCFF485CTB.bigWig hg19 released ENCFF541RTC bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF620XKU 7097716 ENCODE Processing Pipeline e6c25db4b623fa7b1eff41e9a7ac6536 https://www.encodeproject.org/files/ENCFF541RTC/@@download/ENCFF541RTC.bed.gz hg19 released ENCFF494DHW bigBed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF541RTC 13011328 ENCODE Processing Pipeline e05d1dde37d9412f5c8e229395d2dd7c https://www.encodeproject.org/files/ENCFF494DHW/@@download/ENCFF494DHW.bigBed hg19 released ENCFF998ZQU bigBed narrowPeak optimal idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF883TOD 1708315 ENCODE Processing Pipeline 81a8e5743040c6564a9868ff6b7303a5 https://www.encodeproject.org/files/ENCFF998ZQU/@@download/ENCFF998ZQU.bigBed hg19 released ENCFF908VAG bigWig fold change over control ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF620XKU 1165198740 ENCODE Processing Pipeline 8f53809bfe0cf9c5f03fb0eebd0835ef https://www.encodeproject.org/files/ENCFF908VAG/@@download/ENCFF908VAG.bigWig hg19 released ENCFF513IHI bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF620XKU, ENCFF676EUR 7276138 ENCODE Processing Pipeline 832048d93b84753e18b2f10067363414 https://www.encodeproject.org/files/ENCFF513IHI/@@download/ENCFF513IHI.bed.gz hg19 released ENCFF611XRP bigBed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF891UIQ 12905971 ENCODE Processing Pipeline f18aed1b8aeb65cf20f0fad50b84c28d https://www.encodeproject.org/files/ENCFF611XRP/@@download/ENCFF611XRP.bigBed hg19 released ENCFF339AII bigBed narrowPeak conservative idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF670PUR 1117752 ENCODE Processing Pipeline 2f37fb79218441125d08d4a585036444 https://www.encodeproject.org/files/ENCFF339AII/@@download/ENCFF339AII.bigBed hg19 released ENCFF891UIQ bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF676EUR 7092260 ENCODE Processing Pipeline a67287c32c3af5831e07a97dd0c47456 https://www.encodeproject.org/files/ENCFF891UIQ/@@download/ENCFF891UIQ.bed.gz hg19 released ENCFF100HYW bigBed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF513IHI 12877578 ENCODE Processing Pipeline 0a9636ac2e79b5f730708cc8c23265b4 https://www.encodeproject.org/files/ENCFF100HYW/@@download/ENCFF100HYW.bigBed hg19 released ENCFF670PUR bed narrowPeak conservative idr thresholded peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF513IHI, ENCFF541RTC, ENCFF891UIQ 573419 ENCODE Processing Pipeline 3ce2a16d13243c553c7ed86b72868a8f https://www.encodeproject.org/files/ENCFF670PUR/@@download/ENCFF670PUR.bed.gz hg19 released ENCFF000RMV bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RNB 1525698342 Vishwanath Iyer, UTA cb9ad3b39b54948ca0e0b13de3f9155b https://www.encodeproject.org/files/ENCFF000RMV/@@download/ENCFF000RMV.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RMW bigWig base overlap signal ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 486092763 Vishwanath Iyer, UTA a08838e65d616457cd30fadae6f7a3e1 https://www.encodeproject.org/files/ENCFF000RMW/@@download/ENCFF000RMW.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RMX bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USC 1887868 Vishwanath Iyer, UTA cc6537f27608d0cd0799545ccd230528 https://www.encodeproject.org/files/ENCFF000RMX/@@download/ENCFF000RMX.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RMY bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RND 1393082054 Vishwanath Iyer, UTA 17cceba0c599059404c86a9b538331f5 https://www.encodeproject.org/files/ENCFF000RMY/@@download/ENCFF000RMY.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RMZ bigWig signal ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 4895321720 Vishwanath Iyer, UTA 7dfd806cf4dbbfa9980babf5711ab159 https://www.encodeproject.org/files/ENCFF000RMZ/@@download/ENCFF000RMZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RNB fastq reads ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1513444423 Vishwanath Iyer, UTA 849b9f6f615b1d7c8aa3622a9687274e https://www.encodeproject.org/files/ENCFF000RNB/@@download/ENCFF000RNB.fastq.gz Illumina Genome Analyzer /files/ENCFF000RNI/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RND fastq reads ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1394466248 Vishwanath Iyer, UTA ed32408f66371c6e766d1035a501d070 https://www.encodeproject.org/files/ENCFF000RND/@@download/ENCFF000RND.fastq.gz Illumina Genome Analyzer /files/ENCFF000RNI/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001USC bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1182432 Vishwanath Iyer, UTA e27c1acde99518f5f34f251f54c957a2 https://www.encodeproject.org/files/ENCFF001USC/@@download/ENCFF001USC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002DAG bed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1314888 ENCODE Consortium Analysis Working Group f34ed5e00d411207c10dfb09de833671 https://www.encodeproject.org/files/ENCFF002DAG/@@download/ENCFF002DAG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF210JDD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAG 2706525 ENCODE Consortium 874e730637c7246562b8fefe3e37ad8f https://www.encodeproject.org/files/ENCFF210JDD/@@download/ENCFF210JDD.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF533OAE bam unfiltered alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RND, ENCFF643CGH 1793698704 ENCODE Processing Pipeline b066f3a68f80c2c5e81da86c44715d9b https://www.encodeproject.org/files/ENCFF533OAE/@@download/ENCFF533OAE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF472PUP bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RND, ENCFF643CGH 879838417 ENCODE Processing Pipeline 629952675ff346be0404ea2567878de5 https://www.encodeproject.org/files/ENCFF472PUP/@@download/ENCFF472PUP.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF717OLZ bam unfiltered alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNB, ENCFF643CGH 1933107531 ENCODE Processing Pipeline e7616adf48d61fe7410efd557710f5cd https://www.encodeproject.org/files/ENCFF717OLZ/@@download/ENCFF717OLZ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF526MVX bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNB, ENCFF643CGH 928524859 ENCODE Processing Pipeline e452267040fae26297878173e7136660 https://www.encodeproject.org/files/ENCFF526MVX/@@download/ENCFF526MVX.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF276LJP bam unfiltered alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RND, ENCFF807MUK 1784799060 ENCODE Processing Pipeline 2f78629de1e2bfbd34d27ca9728ec751 https://www.encodeproject.org/files/ENCFF276LJP/@@download/ENCFF276LJP.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF074APO bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RND, ENCFF807MUK 880376856 ENCODE Processing Pipeline b98c60d20b677cbbfed2b6de41d926bb https://www.encodeproject.org/files/ENCFF074APO/@@download/ENCFF074APO.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF440WDV bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNB, ENCFF807MUK 929118082 ENCODE Processing Pipeline 5dff134fdabec0333e6fafb7013014e6 https://www.encodeproject.org/files/ENCFF440WDV/@@download/ENCFF440WDV.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF844YDX bam unfiltered alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNB, ENCFF807MUK 1924613701 ENCODE Processing Pipeline f5a33c80781d6cd0ac1731986b7b2c3a https://www.encodeproject.org/files/ENCFF844YDX/@@download/ENCFF844YDX.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF486TZR bigWig signal p-value ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF472PUP, ENCFF509KAJ 635207128 ENCODE Processing Pipeline 0b2feda6eabee117955fc1d0f0ec1eb8 https://www.encodeproject.org/files/ENCFF486TZR/@@download/ENCFF486TZR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF452SPA bigWig signal p-value ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF472PUP, ENCFF509KAJ, ENCFF526MVX 798962848 ENCODE Processing Pipeline 1bfb8ebefaae2277e62fd3748c581432 https://www.encodeproject.org/files/ENCFF452SPA/@@download/ENCFF452SPA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF789QNW bigWig signal p-value ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF509KAJ, ENCFF526MVX 691125975 ENCODE Processing Pipeline 3940651e15004463a1e3d131b67fb853 https://www.encodeproject.org/files/ENCFF789QNW/@@download/ENCFF789QNW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF283WDB bigWig fold change over control ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF509KAJ, ENCFF526MVX 565481154 ENCODE Processing Pipeline 49f34034c58236a4b1471788bc507115 https://www.encodeproject.org/files/ENCFF283WDB/@@download/ENCFF283WDB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF508GOX bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF472PUP, ENCFF509KAJ, ENCFF526MVX 6129162 ENCODE Processing Pipeline 3f74c29094e9ce37fdfc191c3a8bacac https://www.encodeproject.org/files/ENCFF508GOX/@@download/ENCFF508GOX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF105OZZ bigWig fold change over control ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF472PUP, ENCFF509KAJ, ENCFF526MVX 896712386 ENCODE Processing Pipeline b9baa3352f7d01c920288449d2c29897 https://www.encodeproject.org/files/ENCFF105OZZ/@@download/ENCFF105OZZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF963KDF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF252FHU 1347298 ENCODE Processing Pipeline 4c99b41d24e2dacf4b6bdd01810961c0 https://www.encodeproject.org/files/ENCFF963KDF/@@download/ENCFF963KDF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF361BLN bigWig fold change over control ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF472PUP, ENCFF509KAJ 562411929 ENCODE Processing Pipeline 1e03c551fcac5fb608ef0446746a44ec https://www.encodeproject.org/files/ENCFF361BLN/@@download/ENCFF361BLN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF934FNQ bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF509KAJ, ENCFF526MVX 5457918 ENCODE Processing Pipeline 8ba543a68c361830421cd67c677fe9f7 https://www.encodeproject.org/files/ENCFF934FNQ/@@download/ENCFF934FNQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF392ZGT bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF472PUP, ENCFF509KAJ 5310577 ENCODE Processing Pipeline 82417e1fabbede5f002e5243335f8c7b https://www.encodeproject.org/files/ENCFF392ZGT/@@download/ENCFF392ZGT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF291NRV bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF392ZGT 11739457 ENCODE Processing Pipeline b644e8aa30f86f0dc4b0e9b899b58907 https://www.encodeproject.org/files/ENCFF291NRV/@@download/ENCFF291NRV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF298WBK bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF508GOX 12024745 ENCODE Processing Pipeline 98a3be52173f720327ae18c40eb1b66e https://www.encodeproject.org/files/ENCFF298WBK/@@download/ENCFF298WBK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF252FHU bed narrowPeak conservative idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF392ZGT, ENCFF419RSJ, ENCFF508GOX, ENCFF934FNQ 705319 ENCODE Processing Pipeline b618e3be1e44cda4bdbb20d8adbfee87 https://www.encodeproject.org/files/ENCFF252FHU/@@download/ENCFF252FHU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF753PMN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF723LVE 1531843 ENCODE Processing Pipeline bb756021120638617943b7ceff0dfc27 https://www.encodeproject.org/files/ENCFF753PMN/@@download/ENCFF753PMN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF850NLE bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF934FNQ 11812664 ENCODE Processing Pipeline 72ff38526b8425e3ff6bc67bb239cf7f https://www.encodeproject.org/files/ENCFF850NLE/@@download/ENCFF850NLE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF723LVE bed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF392ZGT, ENCFF419RSJ, ENCFF508GOX, ENCFF934FNQ 836420 ENCODE Processing Pipeline 5ba0c58915ab24a504ada79825eaeb85 https://www.encodeproject.org/files/ENCFF723LVE/@@download/ENCFF723LVE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF877NMC bigWig signal p-value ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF424BXF, ENCFF440WDV 650867951 ENCODE Processing Pipeline 5c899e2fdc336040e2499cac8d5bb424 https://www.encodeproject.org/files/ENCFF877NMC/@@download/ENCFF877NMC.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF244XYE bigWig signal p-value ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF074APO, ENCFF424BXF 680789515 ENCODE Processing Pipeline 36447cd17cba85a36cf4134d7e20e1bf https://www.encodeproject.org/files/ENCFF244XYE/@@download/ENCFF244XYE.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF219PZM bigWig signal p-value ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF074APO, ENCFF424BXF, ENCFF440WDV 798136831 ENCODE Processing Pipeline 9d04e3d5538d41be05495a211fd27123 https://www.encodeproject.org/files/ENCFF219PZM/@@download/ENCFF219PZM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF630GHU bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF835YPT 11737762 ENCODE Processing Pipeline bbff93177d992b2ac25e335c175e187c https://www.encodeproject.org/files/ENCFF630GHU/@@download/ENCFF630GHU.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF946SUL bigWig fold change over control ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF424BXF, ENCFF440WDV 568455642 ENCODE Processing Pipeline f31e4f3d08a59cd9500ae9bc563aa0c8 https://www.encodeproject.org/files/ENCFF946SUL/@@download/ENCFF946SUL.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF438LOQ bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF074APO, ENCFF424BXF, ENCFF440WDV 6129944 ENCODE Processing Pipeline b6479f0badd285a00daacb0e58941c96 https://www.encodeproject.org/files/ENCFF438LOQ/@@download/ENCFF438LOQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF875MZN bigWig fold change over control ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF074APO, ENCFF424BXF 562986616 ENCODE Processing Pipeline 571953412b0d13d2beb9d80b98440afe https://www.encodeproject.org/files/ENCFF875MZN/@@download/ENCFF875MZN.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF292UFS bigWig fold change over control ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF074APO, ENCFF424BXF, ENCFF440WDV 894774167 ENCODE Processing Pipeline 61a3f739eb2686a74046e13a79b090f3 https://www.encodeproject.org/files/ENCFF292UFS/@@download/ENCFF292UFS.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF064ZRW bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF438LOQ 12019650 ENCODE Processing Pipeline b99d99f1cf3a7fe1f52d06806d16b393 https://www.encodeproject.org/files/ENCFF064ZRW/@@download/ENCFF064ZRW.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF958WDO bed narrowPeak conservative idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF438LOQ, ENCFF618WVP, ENCFF835YPT 704634 ENCODE Processing Pipeline 195d6879eef6c5064ad0b7361df41f20 https://www.encodeproject.org/files/ENCFF958WDO/@@download/ENCFF958WDO.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF700CJJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF958WDO 1345299 ENCODE Processing Pipeline 38e5617987c49b8b7cf6d0916776c882 https://www.encodeproject.org/files/ENCFF700CJJ/@@download/ENCFF700CJJ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF618WVP bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF424BXF, ENCFF440WDV 5442002 ENCODE Processing Pipeline df187c63a8ffb1ad9e723b1aa0a518ad https://www.encodeproject.org/files/ENCFF618WVP/@@download/ENCFF618WVP.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF835YPT bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF074APO, ENCFF424BXF 5309313 ENCODE Processing Pipeline 414de378a66450e2030c2242e0d93478 https://www.encodeproject.org/files/ENCFF835YPT/@@download/ENCFF835YPT.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF177QPJ bigBed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF618WVP 11788960 ENCODE Processing Pipeline 24dcaae006dab76196d98af2b98a8621 https://www.encodeproject.org/files/ENCFF177QPJ/@@download/ENCFF177QPJ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF879HHE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF909JAZ 1540828 ENCODE Processing Pipeline 7fc345c289282b48934e04030df643dc https://www.encodeproject.org/files/ENCFF879HHE/@@download/ENCFF879HHE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF909JAZ bed narrowPeak optimal idr thresholded peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF438LOQ, ENCFF618WVP, ENCFF835YPT 843442 ENCODE Processing Pipeline 8fa9219e1759affd4c0fc9fe6cdece07 https://www.encodeproject.org/files/ENCFF909JAZ/@@download/ENCFF909JAZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF644NPE fastq reads ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF794FMB 2066989584 Michael Snyder, Stanford 11ee8fbc685c9d6c724aa0d8da692308 SRA:SRR6213254 https://www.encodeproject.org/files/ENCFF644NPE/@@download/ENCFF644NPE.fastq.gz Illumina HiSeq 4000 /files/ENCFF404TLY/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF794FMB fastq reads ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF644NPE 2338516473 Michael Snyder, Stanford 15fab42bd74126e9ea6ff19bcbc0e7c2 SRA:SRR6213254 https://www.encodeproject.org/files/ENCFF794FMB/@@download/ENCFF794FMB.fastq.gz Illumina HiSeq 4000 /files/ENCFF631KZD/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF322MNB bam unfiltered alignments ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF644NPE, ENCFF794FMB, ENCFF807MUK 4205689542 ENCODE Processing Pipeline c324f1f394c0871f0d760fc36aa10663 https://www.encodeproject.org/files/ENCFF322MNB/@@download/ENCFF322MNB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF773QXS bam alignments ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF644NPE, ENCFF794FMB, ENCFF807MUK 2911933885 ENCODE Processing Pipeline b11149252c40b45d4bf400b745093b98 https://www.encodeproject.org/files/ENCFF773QXS/@@download/ENCFF773QXS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF409WGR bam unfiltered alignments ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF644NPE, ENCFF794FMB 4210242031 ENCODE Processing Pipeline d7043bfe2fd33b75f4c056b8153ad0a0 https://www.encodeproject.org/files/ENCFF409WGR/@@download/ENCFF409WGR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF056EFI bam alignments ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF644NPE, ENCFF794FMB 2915783236 ENCODE Processing Pipeline 42e91758087fcc38e1ebcf5524641847 https://www.encodeproject.org/files/ENCFF056EFI/@@download/ENCFF056EFI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF321QWL bigWig signal p-value ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF553WEE, ENCFF773QXS 887603492 ENCODE Processing Pipeline f8a086d2e4923c53154eadd9633322e6 https://www.encodeproject.org/files/ENCFF321QWL/@@download/ENCFF321QWL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF903GXH bigWig fold change over control ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF553WEE, ENCFF773QXS 946739799 ENCODE Processing Pipeline 26f3b3bdca847a7f1181bf965ec76a7f https://www.encodeproject.org/files/ENCFF903GXH/@@download/ENCFF903GXH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF687TDE bigBed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF383NCL 11580429 ENCODE Processing Pipeline d0863ba6dcee4f3d702b54a2c9c22f45 https://www.encodeproject.org/files/ENCFF687TDE/@@download/ENCFF687TDE.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF383NCL bed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF553WEE, ENCFF773QXS 4852087 ENCODE Processing Pipeline 88ab6ea26eedfdb4b74aabdcc2816b3e https://www.encodeproject.org/files/ENCFF383NCL/@@download/ENCFF383NCL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF054PUP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF383NCL 21696 ENCODE Processing Pipeline a18810fe60b1b0de416238125c99cf76 https://www.encodeproject.org/files/ENCFF054PUP/@@download/ENCFF054PUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF976SGQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF054PUP 77696 ENCODE Processing Pipeline 0f483974ab6d27084aa6efccf7c27ca2 https://www.encodeproject.org/files/ENCFF976SGQ/@@download/ENCFF976SGQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF745JEM bigWig signal p-value ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF056EFI 835540202 ENCODE Processing Pipeline d5a4ba41310f4a49cf8bef288f115291 https://www.encodeproject.org/files/ENCFF745JEM/@@download/ENCFF745JEM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF645EDR bigWig fold change over control ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF056EFI 950758989 ENCODE Processing Pipeline 9e8d9a7ee3af49dff9954c183f778aa5 https://www.encodeproject.org/files/ENCFF645EDR/@@download/ENCFF645EDR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF031IUJ bed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037IQW, ENCFF056EFI 4857427 ENCODE Processing Pipeline 100fdf8666c7c0724c1fc3a5523e3255 https://www.encodeproject.org/files/ENCFF031IUJ/@@download/ENCFF031IUJ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF756FEO bigBed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF031IUJ 11603227 ENCODE Processing Pipeline eca7b5c30070d166f26edd61eb8eeeae https://www.encodeproject.org/files/ENCFF756FEO/@@download/ENCFF756FEO.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF992DNN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF031IUJ, ENCFF419RSJ 23286 ENCODE Processing Pipeline b75dcc6e0a7db973bcfac7d33e966a73 https://www.encodeproject.org/files/ENCFF992DNN/@@download/ENCFF992DNN.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF827EAB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF992DNN 81251 ENCODE Processing Pipeline ea318c0914682ea2260e0eca9d56080c https://www.encodeproject.org/files/ENCFF827EAB/@@download/ENCFF827EAB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000OEW bigBed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZA 147213 Richard Myers, HAIB bcf3aa422c5814c731b9b557509e5560 https://www.encodeproject.org/files/ENCFF000OEW/@@download/ENCFF000OEW.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OEX bigBed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZB 142887 Richard Myers, HAIB 53fcfe92ca87c781d38b550a8965508a https://www.encodeproject.org/files/ENCFF000OEX/@@download/ENCFF000OEX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OEY bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OFK 1037265261 Richard Myers, HAIB 2f9e9cf357db38a89a9b9792d1d42c10 https://www.encodeproject.org/files/ENCFF000OEY/@@download/ENCFF000OEY.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OEZ bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OFM 1110983058 Richard Myers, HAIB cfa9f1725478c7b5d11c7dd6c83730f5 https://www.encodeproject.org/files/ENCFF000OEZ/@@download/ENCFF000OEZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OFA bigWig raw signal ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 37539587 Richard Myers, HAIB c67310cd43e0b50fbc3c011c5c598a59 https://www.encodeproject.org/files/ENCFF000OFA/@@download/ENCFF000OFA.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OFB bigWig raw signal ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 38985726 Richard Myers, HAIB b78a1a3a2e838c58c3edc6e24a465944 https://www.encodeproject.org/files/ENCFF000OFB/@@download/ENCFF000OFB.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OFK fastq reads ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1737543499 Richard Myers, HAIB f4201e5af47210bd109495e6b9bc6320 https://www.encodeproject.org/files/ENCFF000OFK/@@download/ENCFF000OFK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000OFM fastq reads ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 2380957280 Richard Myers, HAIB 604cb1d648c1be31128954f60cb467e8 https://www.encodeproject.org/files/ENCFF000OFM/@@download/ENCFF000OFM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF001TZA bed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 58183 Richard Myers, HAIB abddb0f0d7cd46adb9fbc08b4d31f8d1 https://www.encodeproject.org/files/ENCFF001TZA/@@download/ENCFF001TZA.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TZB bed broadPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 65764 Richard Myers, HAIB 1e842c2f75c0452b3c5193e857ad04b1 https://www.encodeproject.org/files/ENCFF001TZB/@@download/ENCFF001TZB.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CHW bed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 184095 ENCODE Consortium Analysis Working Group 51328a96dd2d0fa59860316ae77b9b4b https://www.encodeproject.org/files/ENCFF002CHW/@@download/ENCFF002CHW.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF591FNK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHW 426769 ENCODE Consortium 1d105f13e89076333f94baa5a949657d https://www.encodeproject.org/files/ENCFF591FNK/@@download/ENCFF591FNK.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF497WHG bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF807MUK 1943676930 ENCODE Processing Pipeline 66b2f1179b70c8e1948899db29476c66 https://www.encodeproject.org/files/ENCFF497WHG/@@download/ENCFF497WHG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF210YHD bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF807MUK 626297927 ENCODE Processing Pipeline b32491c135796fb886d2bafb7b375020 https://www.encodeproject.org/files/ENCFF210YHD/@@download/ENCFF210YHD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF263NOT bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF643CGH 630867459 ENCODE Processing Pipeline d11c04ad0ebf411ae606a5f1dff97188 https://www.encodeproject.org/files/ENCFF263NOT/@@download/ENCFF263NOT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF323SHI bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF643CGH 1950206485 ENCODE Processing Pipeline be3087a894738abea84e8c4cf439d706 https://www.encodeproject.org/files/ENCFF323SHI/@@download/ENCFF323SHI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF731ZNW bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF643CGH 693781453 ENCODE Processing Pipeline 8af589ba02fdb061cd605c19ae3330d5 https://www.encodeproject.org/files/ENCFF731ZNW/@@download/ENCFF731ZNW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF187ZGJ bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF807MUK 690261890 ENCODE Processing Pipeline 176e0fbfda4e10e02d4d148ab203fcfe https://www.encodeproject.org/files/ENCFF187ZGJ/@@download/ENCFF187ZGJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF387WBW bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF643CGH 2516275564 ENCODE Processing Pipeline 22b7315335add7500a5af22cea098be4 https://www.encodeproject.org/files/ENCFF387WBW/@@download/ENCFF387WBW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF351NJK bam unfiltered alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF807MUK 2509265522 ENCODE Processing Pipeline f9b40db10c34ab533b2cd469db728728 https://www.encodeproject.org/files/ENCFF351NJK/@@download/ENCFF351NJK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF552IHW bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 583853353 ENCODE Processing Pipeline efcff000b83e33480fdc5aaeb6fb21c1 https://www.encodeproject.org/files/ENCFF552IHW/@@download/ENCFF552IHW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF919XDC bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF263NOT, ENCFF289ONG, ENCFF862QZT 539652592 ENCODE Processing Pipeline c54a57d4097dcf5e0d770635a442b133 https://www.encodeproject.org/files/ENCFF919XDC/@@download/ENCFF919XDC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF142EZZ bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 516542078 ENCODE Processing Pipeline 7c9c8207d4708fe0b7d5de1fc38806b2 https://www.encodeproject.org/files/ENCFF142EZZ/@@download/ENCFF142EZZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF889FHJ bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 527520958 ENCODE Processing Pipeline 8a6fe266bb4de9f4504a64dc4bfb147b https://www.encodeproject.org/files/ENCFF889FHJ/@@download/ENCFF889FHJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF901YGR bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF263NOT, ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 825163141 ENCODE Processing Pipeline b7ecf10ae9a26c2807314abdf3e9d099 https://www.encodeproject.org/files/ENCFF901YGR/@@download/ENCFF901YGR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF547MAP bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 395649923 ENCODE Processing Pipeline ec73e9c5b6d596508b3f3118e558772e https://www.encodeproject.org/files/ENCFF547MAP/@@download/ENCFF547MAP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF108IRL bigWig signal p-value ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187ZGJ, ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 662079610 ENCODE Processing Pipeline ec531e76ca6989c43e479f3a4955cb1d https://www.encodeproject.org/files/ENCFF108IRL/@@download/ENCFF108IRL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF519SOT bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF263NOT, ENCFF289ONG, ENCFF862QZT 390070106 ENCODE Processing Pipeline 7647d58f1b164ad1e3220703f6d3df10 https://www.encodeproject.org/files/ENCFF519SOT/@@download/ENCFF519SOT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF685JIC bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 396454967 ENCODE Processing Pipeline f259cd4fc6dbaa17be707d0a284567ed https://www.encodeproject.org/files/ENCFF685JIC/@@download/ENCFF685JIC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF839SCO bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF263NOT, ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 654593904 ENCODE Processing Pipeline e7287fe847a679093313802aa8c8f440 https://www.encodeproject.org/files/ENCFF839SCO/@@download/ENCFF839SCO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF670YYF bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 392175983 ENCODE Processing Pipeline a451e424cc2a9c6d48bf6ec80618070c https://www.encodeproject.org/files/ENCFF670YYF/@@download/ENCFF670YYF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF128VPM bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF143LWQ 11200313 ENCODE Processing Pipeline 6240b5214d1ecc95f1f6c5be1851aed6 https://www.encodeproject.org/files/ENCFF128VPM/@@download/ENCFF128VPM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF325QYD bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 4958331 ENCODE Processing Pipeline 8c709c81bb435b3d2c1544b35aef59c2 https://www.encodeproject.org/files/ENCFF325QYD/@@download/ENCFF325QYD.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF143LWQ bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF263NOT, ENCFF289ONG, ENCFF862QZT 5314045 ENCODE Processing Pipeline a86ea2313a080cd0f567db48386cf1b4 https://www.encodeproject.org/files/ENCFF143LWQ/@@download/ENCFF143LWQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF801IPK bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF263NOT, ENCFF289ONG, ENCFF731ZNW, ENCFF862QZT 6091662 ENCODE Processing Pipeline 56634b7b1e07519b5a28a84100c88877 https://www.encodeproject.org/files/ENCFF801IPK/@@download/ENCFF801IPK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF077HTK bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF325QYD 11030487 ENCODE Processing Pipeline 76f06b791cf5dd45ab20e71976c95041 https://www.encodeproject.org/files/ENCFF077HTK/@@download/ENCFF077HTK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF662ICX bigWig fold change over control ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187ZGJ, ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 641493499 ENCODE Processing Pipeline 5b1bcc603b0ced254bdd45f366bf0c5a https://www.encodeproject.org/files/ENCFF662ICX/@@download/ENCFF662ICX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF709SWY bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF801IPK 11324935 ENCODE Processing Pipeline 433473ad8300ff43704f3f5ad473fe02 https://www.encodeproject.org/files/ENCFF709SWY/@@download/ENCFF709SWY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF012LEV bed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF143LWQ, ENCFF325QYD, ENCFF419RSJ, ENCFF801IPK 51326 ENCODE Processing Pipeline 5aa2f8e7b0a545c0772cc4596ae323f1 https://www.encodeproject.org/files/ENCFF012LEV/@@download/ENCFF012LEV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF883EFM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012LEV 148608 ENCODE Processing Pipeline 7e7f027d73ede4ac6b03e685bd1662ed https://www.encodeproject.org/files/ENCFF883EFM/@@download/ENCFF883EFM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF339GTZ bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF187ZGJ, ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 6100916 ENCODE Processing Pipeline 3cab67dfcb47113a788fc3bbbf2b37ac https://www.encodeproject.org/files/ENCFF339GTZ/@@download/ENCFF339GTZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF182IFE bed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF143LWQ, ENCFF325QYD, ENCFF419RSJ, ENCFF801IPK 55500 ENCODE Processing Pipeline ff130149520ea9b718f987e52d3e4370 https://www.encodeproject.org/files/ENCFF182IFE/@@download/ENCFF182IFE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF227UBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF182IFE 155358 ENCODE Processing Pipeline 3e7aa81bbf6162d90057877a136ec3c9 https://www.encodeproject.org/files/ENCFF227UBQ/@@download/ENCFF227UBQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF972PDN bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 4984004 ENCODE Processing Pipeline 96eceb07f8556ee2b0b3adf000ed21c5 https://www.encodeproject.org/files/ENCFF972PDN/@@download/ENCFF972PDN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF613VCR bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 5316251 ENCODE Processing Pipeline 633f1f5876b47332344eb8962527dba3 https://www.encodeproject.org/files/ENCFF613VCR/@@download/ENCFF613VCR.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF194GQP bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF613VCR 11200410 ENCODE Processing Pipeline 40de2ff0f0af3b89391da49e23ee081a https://www.encodeproject.org/files/ENCFF194GQP/@@download/ENCFF194GQP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF320OXU bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339GTZ 11299403 ENCODE Processing Pipeline 82c6485850e5eb88fbf020d7abfedff5 https://www.encodeproject.org/files/ENCFF320OXU/@@download/ENCFF320OXU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF721BKY bigBed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF972PDN 11031195 ENCODE Processing Pipeline e3d20c5c47483044437177d42c6fa11b https://www.encodeproject.org/files/ENCFF721BKY/@@download/ENCFF721BKY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF593FGJ bed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF339GTZ, ENCFF613VCR, ENCFF972PDN 51032 ENCODE Processing Pipeline e9899aee5e2765c75a27bd2c8db8cdce https://www.encodeproject.org/files/ENCFF593FGJ/@@download/ENCFF593FGJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF320KBS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593FGJ 148301 ENCODE Processing Pipeline bd72b03b25d8706e97a1d89305e4f0d4 https://www.encodeproject.org/files/ENCFF320KBS/@@download/ENCFF320KBS.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF199WGD bed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF339GTZ, ENCFF613VCR, ENCFF972PDN 55949 ENCODE Processing Pipeline edc30706d0e012b4c150f744cbd30f3f https://www.encodeproject.org/files/ENCFF199WGD/@@download/ENCFF199WGD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF572HLP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199WGD 155407 ENCODE Processing Pipeline 735bc1bc4a46256f6fbddf05f742990c https://www.encodeproject.org/files/ENCFF572HLP/@@download/ENCFF572HLP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF243UPJ bam unfiltered alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF531SYI, ENCFF615EVJ, ENCFF807MUK 4872863259 ENCODE Processing Pipeline e710c145a46d4a460433789146b64ce8 https://www.encodeproject.org/files/ENCFF243UPJ/@@download/ENCFF243UPJ.bam hg19 released mild to moderate bottlenecking ENCFF339MMC bam unfiltered alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF034ESF, ENCFF668WFT, ENCFF807MUK 5155122463 ENCODE Processing Pipeline 9beaba14a91a608d09da2f0588bac574 https://www.encodeproject.org/files/ENCFF339MMC/@@download/ENCFF339MMC.bam hg19 released mild to moderate bottlenecking ENCFF034ESF fastq reads ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF668WFT 2412170659 Michael Snyder, Stanford a0d12a165a3927c1c26fe94230d61567 SRA:SRR5111192 https://www.encodeproject.org/files/ENCFF034ESF/@@download/ENCFF034ESF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking ENCFF668WFT fastq reads ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF034ESF 2497130301 Michael Snyder, Stanford b8565af8cf5bc7a28f5cc43f5d6a08d4 SRA:SRR5111192 https://www.encodeproject.org/files/ENCFF668WFT/@@download/ENCFF668WFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking ENCFF531SYI fastq reads ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF615EVJ 2303841701 Michael Snyder, Stanford 67d6eb51266c1cad313fbfe2ec6c0096 SRA:SRR5111191 https://www.encodeproject.org/files/ENCFF531SYI/@@download/ENCFF531SYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking ENCFF615EVJ fastq reads ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF531SYI 2237816414 Michael Snyder, Stanford f650510769000a6cec4eaf5f47002509 SRA:SRR5111191 https://www.encodeproject.org/files/ENCFF615EVJ/@@download/ENCFF615EVJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking ENCFF115WLQ bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF531SYI, ENCFF615EVJ, ENCFF807MUK 3844067971 ENCODE Processing Pipeline e0b7f26ffdcb5bc0aea3e2b7da04be9f https://www.encodeproject.org/files/ENCFF115WLQ/@@download/ENCFF115WLQ.bam hg19 released mild to moderate bottlenecking ENCFF868URB bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF034ESF, ENCFF668WFT, ENCFF807MUK 3819756270 ENCODE Processing Pipeline f9bc088cd6904defad61fd60e82d9ddc https://www.encodeproject.org/files/ENCFF868URB/@@download/ENCFF868URB.bam hg19 released mild to moderate bottlenecking ENCFF107JFM bigWig signal p-value ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF115WLQ 1099763285 ENCODE Processing Pipeline a498080644aa03c7808a6a5392c2157f https://www.encodeproject.org/files/ENCFF107JFM/@@download/ENCFF107JFM.bigWig hg19 released mild to moderate bottlenecking ENCFF125YCK bigWig fold change over control ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF115WLQ 1093985226 ENCODE Processing Pipeline 62b7e0000e04d268c87185c222663220 https://www.encodeproject.org/files/ENCFF125YCK/@@download/ENCFF125YCK.bigWig hg19 released mild to moderate bottlenecking ENCFF816RJG bam unfiltered alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF531SYI, ENCFF615EVJ, ENCFF643CGH 4874350280 ENCODE Processing Pipeline bbad078280800583d78c7bb1f2c51779 https://www.encodeproject.org/files/ENCFF816RJG/@@download/ENCFF816RJG.bam GRCh38 released mild to moderate bottlenecking ENCFF269YDC bam unfiltered alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF034ESF, ENCFF643CGH, ENCFF668WFT 5155631449 ENCODE Processing Pipeline 2ea1e21325f5727adbd82cdc04847166 https://www.encodeproject.org/files/ENCFF269YDC/@@download/ENCFF269YDC.bam GRCh38 released mild to moderate bottlenecking ENCFF294UTM bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF531SYI, ENCFF615EVJ, ENCFF643CGH 3846528508 ENCODE Processing Pipeline 5a7301cf90baee3667d053624e9987e7 https://www.encodeproject.org/files/ENCFF294UTM/@@download/ENCFF294UTM.bam GRCh38 released mild to moderate bottlenecking ENCFF387BDW bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF034ESF, ENCFF643CGH, ENCFF668WFT 3822377080 ENCODE Processing Pipeline 78d515ea9cc89fc2ae3a9de068f4cb5c https://www.encodeproject.org/files/ENCFF387BDW/@@download/ENCFF387BDW.bam GRCh38 released mild to moderate bottlenecking ENCFF299MZX bigWig signal p-value ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF387BDW, ENCFF910IKB 1146509705 ENCODE Processing Pipeline 4507c3910423f8e5732a122439a6f6ab https://www.encodeproject.org/files/ENCFF299MZX/@@download/ENCFF299MZX.bigWig GRCh38 released mild to moderate bottlenecking ENCFF641SPH bigWig signal p-value ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF294UTM 936788768 ENCODE Processing Pipeline 3f93860291752d5ddc6c45ecf4398e04 https://www.encodeproject.org/files/ENCFF641SPH/@@download/ENCFF641SPH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF700OGW bigWig signal p-value ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF294UTM, ENCFF387BDW, ENCFF910IKB 1963141551 ENCODE Processing Pipeline 96a3b417e7dca7fa1fbd245581aff341 https://www.encodeproject.org/files/ENCFF700OGW/@@download/ENCFF700OGW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF714ASE bigWig fold change over control ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF387BDW, ENCFF910IKB 1100568844 ENCODE Processing Pipeline d723bbfc0cb239cb12ecc9f43a4e91ec https://www.encodeproject.org/files/ENCFF714ASE/@@download/ENCFF714ASE.bigWig GRCh38 released mild to moderate bottlenecking ENCFF280JMW bigWig fold change over control ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF294UTM 1094511364 ENCODE Processing Pipeline 62de3f5e7c21b6772ecf79592815b3ac https://www.encodeproject.org/files/ENCFF280JMW/@@download/ENCFF280JMW.bigWig GRCh38 released mild to moderate bottlenecking ENCFF939SCH bigWig fold change over control ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF294UTM, ENCFF387BDW, ENCFF910IKB 2028167822 ENCODE Processing Pipeline 72271319d12267bf6484d58fbb4864a0 https://www.encodeproject.org/files/ENCFF939SCH/@@download/ENCFF939SCH.bigWig GRCh38 released mild to moderate bottlenecking ENCFF714QFT bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF387BDW, ENCFF910IKB 7036368 ENCODE Processing Pipeline 83a131a0e537cbc0f623d4adfc8b9ec2 https://www.encodeproject.org/files/ENCFF714QFT/@@download/ENCFF714QFT.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF361OHW bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF227IZS, ENCFF294UTM 6964158 ENCODE Processing Pipeline ee9b3d8b92752a01cb4f31f7aea4bdd7 https://www.encodeproject.org/files/ENCFF361OHW/@@download/ENCFF361OHW.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF993DRQ bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF227IZS, ENCFF294UTM, ENCFF387BDW, ENCFF910IKB 7106346 ENCODE Processing Pipeline 924a15247057c31eb932639946fd80a9 https://www.encodeproject.org/files/ENCFF993DRQ/@@download/ENCFF993DRQ.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF694AIS bigBed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF714QFT 12824724 ENCODE Processing Pipeline c3821e1e4e257d91d236b90c86ac5d4c https://www.encodeproject.org/files/ENCFF694AIS/@@download/ENCFF694AIS.bigBed GRCh38 released mild to moderate bottlenecking ENCFF934MWQ bigBed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF361OHW 12987654 ENCODE Processing Pipeline 063db3a832c050d0f18242a7732bfc02 https://www.encodeproject.org/files/ENCFF934MWQ/@@download/ENCFF934MWQ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF751YOC bigBed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF993DRQ 12617901 ENCODE Processing Pipeline 3fcea7f0840530396c6c0d4e38615501 https://www.encodeproject.org/files/ENCFF751YOC/@@download/ENCFF751YOC.bigBed GRCh38 released mild to moderate bottlenecking ENCFF355IGX bed narrowPeak conservative idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF361OHW, ENCFF419RSJ, ENCFF714QFT, ENCFF993DRQ 414697 ENCODE Processing Pipeline cd9b36fedd530fc6d8ce1f485971b921 https://www.encodeproject.org/files/ENCFF355IGX/@@download/ENCFF355IGX.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF086ULZ bigBed narrowPeak conservative idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF355IGX 852318 ENCODE Processing Pipeline 28da30631ea4ddba708bc6b627967e62 https://www.encodeproject.org/files/ENCFF086ULZ/@@download/ENCFF086ULZ.bigBed GRCh38 released mild to moderate bottlenecking ENCFF435SZS bed narrowPeak optimal idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF361OHW, ENCFF419RSJ, ENCFF714QFT, ENCFF993DRQ 628471 ENCODE Processing Pipeline 8bfd54d7b34ff6b8b5afaebb7957e9f7 https://www.encodeproject.org/files/ENCFF435SZS/@@download/ENCFF435SZS.bed.gz GRCh38 released mild to moderate bottlenecking ENCFF871WOL bigBed narrowPeak optimal idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF435SZS 1168038 ENCODE Processing Pipeline ec2513589de29df6755f5fcfe02a8001 https://www.encodeproject.org/files/ENCFF871WOL/@@download/ENCFF871WOL.bigBed GRCh38 released mild to moderate bottlenecking ENCFF156YWV bigWig signal p-value ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF868URB 1121370854 ENCODE Processing Pipeline f89957ffb58c0e71b3f75a5ea6387a5a https://www.encodeproject.org/files/ENCFF156YWV/@@download/ENCFF156YWV.bigWig hg19 released mild to moderate bottlenecking ENCFF149IXH bigBed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF216OFC 12825711 ENCODE Processing Pipeline 5937b201014a37f73916a99fc0b9c636 https://www.encodeproject.org/files/ENCFF149IXH/@@download/ENCFF149IXH.bigBed hg19 released mild to moderate bottlenecking ENCFF217ZRA bigWig fold change over control ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF868URB 1103190349 ENCODE Processing Pipeline 877196273e2db3fa7caf578ec6986613 https://www.encodeproject.org/files/ENCFF217ZRA/@@download/ENCFF217ZRA.bigWig hg19 released mild to moderate bottlenecking ENCFF216OFC bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF868URB 7046613 ENCODE Processing Pipeline 46d98ee5e5f4ed73ee11ee9bf5aa5bd7 https://www.encodeproject.org/files/ENCFF216OFC/@@download/ENCFF216OFC.bed.gz hg19 released mild to moderate bottlenecking ENCFF704QCS bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF115WLQ, ENCFF581ZJL, ENCFF868URB 7123376 ENCODE Processing Pipeline 803bc987900fd64dee1c82633eb30979 https://www.encodeproject.org/files/ENCFF704QCS/@@download/ENCFF704QCS.bed.gz hg19 released mild to moderate bottlenecking ENCFF896SOU bigWig signal p-value ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF115WLQ, ENCFF581ZJL, ENCFF868URB 1824693928 ENCODE Processing Pipeline f57ced610b76dc73cf01bc2a77ab8bc7 https://www.encodeproject.org/files/ENCFF896SOU/@@download/ENCFF896SOU.bigWig hg19 released mild to moderate bottlenecking ENCFF348YUO bigWig fold change over control ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF115WLQ, ENCFF581ZJL, ENCFF868URB 2017661496 ENCODE Processing Pipeline 899e40ea7e51bca340da6f3a340cc469 https://www.encodeproject.org/files/ENCFF348YUO/@@download/ENCFF348YUO.bigWig hg19 released mild to moderate bottlenecking ENCFF118OEM bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF115WLQ 6930776 ENCODE Processing Pipeline 7ebe12154b71d7b0c29387f0c8cd6fa8 https://www.encodeproject.org/files/ENCFF118OEM/@@download/ENCFF118OEM.bed.gz hg19 released mild to moderate bottlenecking ENCFF811SJN bed narrowPeak conservative idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF118OEM, ENCFF216OFC, ENCFF704QCS 415363 ENCODE Processing Pipeline 9d94ddf8c251fb24c62858a99c618dc8 https://www.encodeproject.org/files/ENCFF811SJN/@@download/ENCFF811SJN.bed.gz hg19 released mild to moderate bottlenecking ENCFF622RBW bed narrowPeak optimal idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF118OEM, ENCFF216OFC, ENCFF704QCS 630202 ENCODE Processing Pipeline 5f057957225cf1e6e0f6ab38a3f8c7fd https://www.encodeproject.org/files/ENCFF622RBW/@@download/ENCFF622RBW.bed.gz hg19 released mild to moderate bottlenecking ENCFF956MXA bigBed narrowPeak optimal idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF622RBW 1170201 ENCODE Processing Pipeline 561e44448f519e22f3ec186c8fa8ab88 https://www.encodeproject.org/files/ENCFF956MXA/@@download/ENCFF956MXA.bigBed hg19 released mild to moderate bottlenecking ENCFF005HYP bigBed narrowPeak conservative idr thresholded peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF811SJN 851819 ENCODE Processing Pipeline 405fd551982fa8b674917b8e49da3660 https://www.encodeproject.org/files/ENCFF005HYP/@@download/ENCFF005HYP.bigBed hg19 released mild to moderate bottlenecking ENCFF737OVH bigBed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF118OEM 12941751 ENCODE Processing Pipeline 7867ad43b8dc6912f38ce2ac15c56e80 https://www.encodeproject.org/files/ENCFF737OVH/@@download/ENCFF737OVH.bigBed hg19 released mild to moderate bottlenecking ENCFF517KZY bigBed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1, 2 ENCFF704QCS 12632029 ENCODE Processing Pipeline 0f01a240659c3b24d5cfcaa01c3dd1f4 https://www.encodeproject.org/files/ENCFF517KZY/@@download/ENCFF517KZY.bigBed hg19 released mild to moderate bottlenecking ENCFF000NQL bam alignments ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRB 1739768130 Richard Myers, HAIB 3c5f13557bf07e5d73b942928d768a39 https://www.encodeproject.org/files/ENCFF000NQL/@@download/ENCFF000NQL.bam hg19 released biological replicates with identical biosample ENCFF000NQM bam alignments ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRA 1654569366 Richard Myers, HAIB c4098a65eefb0fd5a08c6f39f71c03dc https://www.encodeproject.org/files/ENCFF000NQM/@@download/ENCFF000NQM.bam hg19 released biological replicates with identical biosample ENCFF000NQN bigBed broadPeak peaks ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVT 557407 Richard Myers, HAIB 4f10ecc98110a7f7753483145ec2fb40 https://www.encodeproject.org/files/ENCFF000NQN/@@download/ENCFF000NQN.bigBed hg19 released biological replicates with identical biosample ENCFF000NQO bigBed broadPeak peaks ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVU 533717 Richard Myers, HAIB b8da67d932228d125fe39e93bcc54eb9 https://www.encodeproject.org/files/ENCFF000NQO/@@download/ENCFF000NQO.bigBed hg19 released biological replicates with identical biosample ENCFF000NQQ bigWig raw signal ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 241692960 Richard Myers, HAIB 5c456cbdb360a66bb2462a1b4c3e8cf7 https://www.encodeproject.org/files/ENCFF000NQQ/@@download/ENCFF000NQQ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NQS bigWig raw signal ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 218228399 Richard Myers, HAIB fc666162be633c435a1b9589d6eaab26 https://www.encodeproject.org/files/ENCFF000NQS/@@download/ENCFF000NQS.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NRA fastq reads ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1694616510 Richard Myers, HAIB 97af3fb11a62bf847cd63533c4e1b05f https://www.encodeproject.org/files/ENCFF000NRA/@@download/ENCFF000NRA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NRB fastq reads ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1790631304 Richard Myers, HAIB 69185791f799fe944a713447ff027a21 https://www.encodeproject.org/files/ENCFF000NRB/@@download/ENCFF000NRB.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVT bed broadPeak peaks ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 343715 Richard Myers, HAIB a934756296089493f6b23bc2344a31df https://www.encodeproject.org/files/ENCFF001TVT/@@download/ENCFF001TVT.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVU bed broadPeak peaks ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 309822 Richard Myers, HAIB 7d8b87ec52d8d82ff88107cf1c0d65f8 https://www.encodeproject.org/files/ENCFF001TVU/@@download/ENCFF001TVU.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF918QWX fastq reads ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 1 ENCFF471FTR 2175416884 Richard Myers, HAIB 5c1924a7d66b31c2f8f504639e140e60 SRA:SRR6213971 https://www.encodeproject.org/files/ENCFF918QWX/@@download/ENCFF918QWX.fastq.gz Illumina HiSeq 2000 /files/ENCFF502QEU/ released antibody characterized with exemption ENCFF471FTR fastq reads ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 1 76 paired-ended 2 ENCFF918QWX 2272776798 Richard Myers, HAIB ea1622f57c8e90f5286885fa82677cf2 SRA:SRR6213971 https://www.encodeproject.org/files/ENCFF471FTR/@@download/ENCFF471FTR.fastq.gz Illumina HiSeq 2000 /files/ENCFF495BLX/ released antibody characterized with exemption ENCFF526TYR bam unfiltered alignments ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF471FTR, ENCFF643CGH, ENCFF918QWX 5302401228 ENCODE Processing Pipeline 1dfdd9254e29c7a881b9420c39331ea6 https://www.encodeproject.org/files/ENCFF526TYR/@@download/ENCFF526TYR.bam GRCh38 released antibody characterized with exemption ENCFF359AXT bam unfiltered alignments ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF471FTR, ENCFF807MUK, ENCFF918QWX 5279618935 ENCODE Processing Pipeline a56294427c216264cbdb450f72691408 https://www.encodeproject.org/files/ENCFF359AXT/@@download/ENCFF359AXT.bam hg19 released antibody characterized with exemption ENCFF765ZZI bam alignments ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF471FTR, ENCFF643CGH, ENCFF918QWX 3463742759 ENCODE Processing Pipeline 33a031f9e4fc24960f20622adbd23a14 https://www.encodeproject.org/files/ENCFF765ZZI/@@download/ENCFF765ZZI.bam GRCh38 released antibody characterized with exemption ENCFF698NVU bam alignments ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF471FTR, ENCFF807MUK, ENCFF918QWX 3461342070 ENCODE Processing Pipeline 4c3cd832d6ed2fc6d26c0adf2a2dfd45 https://www.encodeproject.org/files/ENCFF698NVU/@@download/ENCFF698NVU.bam hg19 released antibody characterized with exemption ENCFF021CMC bigWig signal p-value ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF194FBM, ENCFF765ZZI 1367708550 ENCODE Processing Pipeline b0bd05c9864284ac7f089a5abd2dd692 https://www.encodeproject.org/files/ENCFF021CMC/@@download/ENCFF021CMC.bigWig GRCh38 released antibody characterized with exemption ENCFF249ABO bigWig fold change over control ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF194FBM, ENCFF765ZZI 1181036526 ENCODE Processing Pipeline c84a6723d1d7498e346527189f261a31 https://www.encodeproject.org/files/ENCFF249ABO/@@download/ENCFF249ABO.bigWig GRCh38 released antibody characterized with exemption ENCFF629UPV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF419RSJ, ENCFF809RZH 537062 ENCODE Processing Pipeline c6af5bea9055cb38d8fdcec2bf82e4e3 https://www.encodeproject.org/files/ENCFF629UPV/@@download/ENCFF629UPV.bed.gz GRCh38 released antibody characterized with exemption ENCFF147KAV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF629UPV 1116019 ENCODE Processing Pipeline f86f1390a53091ee32a50e956a63db6e https://www.encodeproject.org/files/ENCFF147KAV/@@download/ENCFF147KAV.bigBed GRCh38 released antibody characterized with exemption ENCFF809RZH bed narrowPeak peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF194FBM, ENCFF765ZZI 6159023 ENCODE Processing Pipeline 7eeebef2e06bfbbdf351b0d567088613 https://www.encodeproject.org/files/ENCFF809RZH/@@download/ENCFF809RZH.bed.gz GRCh38 released antibody characterized with exemption ENCFF644GIR bigBed narrowPeak peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF809RZH 11999198 ENCODE Processing Pipeline 1341805ad9cc120c9bd4f68896496426 https://www.encodeproject.org/files/ENCFF644GIR/@@download/ENCFF644GIR.bigBed GRCh38 released antibody characterized with exemption ENCFF397KNS bigWig signal p-value ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF401GWQ, ENCFF698NVU 1353708854 ENCODE Processing Pipeline a87a79d21edb96ba24a231ee257fc94a https://www.encodeproject.org/files/ENCFF397KNS/@@download/ENCFF397KNS.bigWig hg19 released antibody characterized with exemption ENCFF868DFG bed narrowPeak peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF401GWQ, ENCFF698NVU 6107575 ENCODE Processing Pipeline e9fda8f51dade07b143e938bdc7092b6 https://www.encodeproject.org/files/ENCFF868DFG/@@download/ENCFF868DFG.bed.gz hg19 released antibody characterized with exemption ENCFF475AUK bigBed narrowPeak peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF868DFG 11938718 ENCODE Processing Pipeline 2e848e63ac5b16ee71a98e1f73b227c4 https://www.encodeproject.org/files/ENCFF475AUK/@@download/ENCFF475AUK.bigBed hg19 released antibody characterized with exemption ENCFF560XSC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF001TDO, ENCFF868DFG 518557 ENCODE Processing Pipeline a12494447d35a24ac6962408dcf368aa https://www.encodeproject.org/files/ENCFF560XSC/@@download/ENCFF560XSC.bed.gz hg19 released antibody characterized with exemption ENCFF460SOG bigWig fold change over control ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF401GWQ, ENCFF698NVU 1189207514 ENCODE Processing Pipeline 925c6f2d9471d6cc3408f823a97cffd1 https://www.encodeproject.org/files/ENCFF460SOG/@@download/ENCFF460SOG.bigWig hg19 released antibody characterized with exemption ENCFF396XYX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF560XSC 899700 ENCODE Processing Pipeline d9ef458a1b73c20e541bb9054df0d8f6 https://www.encodeproject.org/files/ENCFF396XYX/@@download/ENCFF396XYX.bigBed hg19 released antibody characterized with exemption ENCFF000XPF bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XPL 348569384 Michael Snyder, Stanford 575daf5cdfeb7b0879be03cfaccfee6a https://www.encodeproject.org/files/ENCFF000XPF/@@download/ENCFF000XPF.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPG bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJW 863068 Michael Snyder, Stanford 9eb9999b9b3e6a085cfb4569f78f73c6 https://www.encodeproject.org/files/ENCFF000XPG/@@download/ENCFF000XPG.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPH bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XPS 489403536 Michael Snyder, Stanford 0a15c231c84bfad9786707e2e6208e85 https://www.encodeproject.org/files/ENCFF000XPH/@@download/ENCFF000XPH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPI bigWig signal ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 341107121 Michael Snyder, Stanford 2d1deb303e39c1a2c0376e23a8f16cb1 https://www.encodeproject.org/files/ENCFF000XPI/@@download/ENCFF000XPI.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XPL fastq reads ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 610733180 Michael Snyder, Stanford 12cdf8977e83db4a8c3eadd8309360f8 https://www.encodeproject.org/files/ENCFF000XPL/@@download/ENCFF000XPL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPS fastq reads ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1137580819 Michael Snyder, Stanford f7d8f37b7bd3ae01505e76807fe68a40 https://www.encodeproject.org/files/ENCFF000XPS/@@download/ENCFF000XPS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VJW bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 327189 Michael Snyder, Stanford 9af5f467ee5ede712ec8922a2dbdb5e7 https://www.encodeproject.org/files/ENCFF001VJW/@@download/ENCFF001VJW.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CTU bed narrowPeak optimal idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 41157 ENCODE Consortium Analysis Working Group 4e3339d5fd7fc75a651eaf7949e2f4af https://www.encodeproject.org/files/ENCFF002CTU/@@download/ENCFF002CTU.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF028KDH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTU 200516 ENCODE Consortium e69d4846a05f65eaf063ad82fd53a3f1 https://www.encodeproject.org/files/ENCFF028KDH/@@download/ENCFF028KDH.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF230XGL bam unfiltered alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPL, ENCFF643CGH 784704410 ENCODE Processing Pipeline c8649cb73cb28d77a5a64e8f3f66c9f1 https://www.encodeproject.org/files/ENCFF230XGL/@@download/ENCFF230XGL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF134KPW bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPL, ENCFF643CGH 527112547 ENCODE Processing Pipeline a74a3ca3e3749050dc5e042686bb3e9c https://www.encodeproject.org/files/ENCFF134KPW/@@download/ENCFF134KPW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381UHY bam unfiltered alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPS, ENCFF643CGH 1384798494 ENCODE Processing Pipeline 0a349e92771251e880cb335a604a52b6 https://www.encodeproject.org/files/ENCFF381UHY/@@download/ENCFF381UHY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699JHR bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPS, ENCFF643CGH 913589274 ENCODE Processing Pipeline 245047ba5fa5fc9393fe202d297299f1 https://www.encodeproject.org/files/ENCFF699JHR/@@download/ENCFF699JHR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF100HQM bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPL, ENCFF807MUK 527381795 ENCODE Processing Pipeline 151e54dd73f349e4b8ab5e7c33f8b001 https://www.encodeproject.org/files/ENCFF100HQM/@@download/ENCFF100HQM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF643YLP bam unfiltered alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPL, ENCFF807MUK 780728148 ENCODE Processing Pipeline 4f7e089f7d1872bd2dacf6a026630260 https://www.encodeproject.org/files/ENCFF643YLP/@@download/ENCFF643YLP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF244KNV bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPS, ENCFF807MUK 914041967 ENCODE Processing Pipeline 4c35fd9fa66522cd4ef581551aa50e5d https://www.encodeproject.org/files/ENCFF244KNV/@@download/ENCFF244KNV.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF890OWK bam unfiltered alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPS, ENCFF807MUK 1378781296 ENCODE Processing Pipeline b4a95a10928261102330b92e930f56f8 https://www.encodeproject.org/files/ENCFF890OWK/@@download/ENCFF890OWK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF037UNJ bigWig signal p-value ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF134KPW, ENCFF165KZY 537645553 ENCODE Processing Pipeline c4034c82840c7e4f2d9abefa9e870519 https://www.encodeproject.org/files/ENCFF037UNJ/@@download/ENCFF037UNJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF098BMP bigWig signal p-value ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF699JHR 534365835 ENCODE Processing Pipeline 5c29ae1d9826a50581cb1039e8be4b4a https://www.encodeproject.org/files/ENCFF098BMP/@@download/ENCFF098BMP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF399IIS bigWig fold change over control ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF134KPW, ENCFF165KZY 335797855 ENCODE Processing Pipeline 773d34fcfff15213a52b038c835c795d https://www.encodeproject.org/files/ENCFF399IIS/@@download/ENCFF399IIS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF335DHK bigWig signal p-value ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF134KPW, ENCFF165KZY, ENCFF699JHR 691385916 ENCODE Processing Pipeline b9e5bc1534d013ee088b9bf4230d3bdc https://www.encodeproject.org/files/ENCFF335DHK/@@download/ENCFF335DHK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF191NNV bigWig fold change over control ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF134KPW, ENCFF165KZY, ENCFF699JHR 662149742 ENCODE Processing Pipeline 5bbf5d4a6ded9888a4ab1e06ebabdca0 https://www.encodeproject.org/files/ENCFF191NNV/@@download/ENCFF191NNV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379LRX bigWig fold change over control ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF699JHR 473753206 ENCODE Processing Pipeline a423842c90fa08970d674661c8133e9e https://www.encodeproject.org/files/ENCFF379LRX/@@download/ENCFF379LRX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760ZIN bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF025YGD 10678663 ENCODE Processing Pipeline 8fea1931441db38e77ce2c15a8fd2d1b https://www.encodeproject.org/files/ENCFF760ZIN/@@download/ENCFF760ZIN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803PHU bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF383UGF 11015838 ENCODE Processing Pipeline 11231193d305baee5e2d23f3c9a6c90b https://www.encodeproject.org/files/ENCFF803PHU/@@download/ENCFF803PHU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF025YGD bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF134KPW, ENCFF165KZY 4430729 ENCODE Processing Pipeline 186826fe010297ccd02ec5ce9927a7fe https://www.encodeproject.org/files/ENCFF025YGD/@@download/ENCFF025YGD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF967DGT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF684AZX 118193 ENCODE Processing Pipeline fae5e86c257478921c44417038bac6a0 https://www.encodeproject.org/files/ENCFF967DGT/@@download/ENCFF967DGT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF383UGF bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF699JHR 4779359 ENCODE Processing Pipeline 7f28335c3a4e8ac3753ac41e5ed0521e https://www.encodeproject.org/files/ENCFF383UGF/@@download/ENCFF383UGF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF720ZDL bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF134KPW, ENCFF165KZY, ENCFF699JHR 5520672 ENCODE Processing Pipeline c4a1d1e4e92865a3b1b05ea9042cdf06 https://www.encodeproject.org/files/ENCFF720ZDL/@@download/ENCFF720ZDL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF661FLL bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF720ZDL 11408113 ENCODE Processing Pipeline 00c2cb428866d31d3c5952f14e51218e https://www.encodeproject.org/files/ENCFF661FLL/@@download/ENCFF661FLL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF684AZX bed narrowPeak conservative idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF025YGD, ENCFF383UGF, ENCFF419RSJ, ENCFF720ZDL 36143 ENCODE Processing Pipeline a382e367d45f825147b920651a2f6d2e https://www.encodeproject.org/files/ENCFF684AZX/@@download/ENCFF684AZX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF897ETK bed narrowPeak optimal idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF025YGD, ENCFF383UGF, ENCFF419RSJ, ENCFF720ZDL 39806 ENCODE Processing Pipeline 02cdb90cd7cb3f055dbad5f6821593da https://www.encodeproject.org/files/ENCFF897ETK/@@download/ENCFF897ETK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF682OPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF897ETK 123469 ENCODE Processing Pipeline 8bf40874d09fd72763d291780e015afe https://www.encodeproject.org/files/ENCFF682OPL/@@download/ENCFF682OPL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF387KIC bigWig signal p-value ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF244KNV 600628757 ENCODE Processing Pipeline aed36ef9a03317734c15ab6b7a6e1a98 https://www.encodeproject.org/files/ENCFF387KIC/@@download/ENCFF387KIC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF890UER bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF100HQM, ENCFF107SKX 4498189 ENCODE Processing Pipeline 0c7c651eacc8d99e9bf02c9351327825 https://www.encodeproject.org/files/ENCFF890UER/@@download/ENCFF890UER.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF822CYF bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF890UER 10759478 ENCODE Processing Pipeline 7e61acb2582f5c8bebf5a287bb4ecec4 https://www.encodeproject.org/files/ENCFF822CYF/@@download/ENCFF822CYF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF350JQW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF619ZLP 118020 ENCODE Processing Pipeline 1e53a2d14d39e9d6fd848ed4ec963dc7 https://www.encodeproject.org/files/ENCFF350JQW/@@download/ENCFF350JQW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF899VZU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF775PPJ 122402 ENCODE Processing Pipeline c90658692d8c8ee2bb44f45cd480ef55 https://www.encodeproject.org/files/ENCFF899VZU/@@download/ENCFF899VZU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF452VXS bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF698OHI 11007813 ENCODE Processing Pipeline 8248256a22be2f5d1e4f377f679fde0f https://www.encodeproject.org/files/ENCFF452VXS/@@download/ENCFF452VXS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427SJV bigWig fold change over control ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF244KNV 451510400 ENCODE Processing Pipeline 4840ac33786186521dd4cfed5147e755 https://www.encodeproject.org/files/ENCFF427SJV/@@download/ENCFF427SJV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF768NFK bigWig signal p-value ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF100HQM, ENCFF107SKX 569931974 ENCODE Processing Pipeline cbc2377518de088192188f0afe49e7e9 https://www.encodeproject.org/files/ENCFF768NFK/@@download/ENCFF768NFK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF759IZG bigWig fold change over control ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100HQM, ENCFF107SKX, ENCFF244KNV 695936594 ENCODE Processing Pipeline 29e70d8d008a7f4afba274e120c4eac2 https://www.encodeproject.org/files/ENCFF759IZG/@@download/ENCFF759IZG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884QMQ bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100HQM, ENCFF107SKX, ENCFF244KNV 5237717 ENCODE Processing Pipeline 2d928d3b8eabfa635b1610d123c04b80 https://www.encodeproject.org/files/ENCFF884QMQ/@@download/ENCFF884QMQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748IGG bigBed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF884QMQ 11299874 ENCODE Processing Pipeline 4a812bac0809920b5754cc5b5c917766 https://www.encodeproject.org/files/ENCFF748IGG/@@download/ENCFF748IGG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF775PPJ bed narrowPeak optimal idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF698OHI, ENCFF884QMQ, ENCFF890UER 39567 ENCODE Processing Pipeline 275c0cb5c6eb3e6d2abcb295077fbb51 https://www.encodeproject.org/files/ENCFF775PPJ/@@download/ENCFF775PPJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF144FXY bigWig fold change over control ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF100HQM, ENCFF107SKX 343373560 ENCODE Processing Pipeline 7ace2f4e4cc938a90340bd20081a5d8e https://www.encodeproject.org/files/ENCFF144FXY/@@download/ENCFF144FXY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803ORL bigWig signal p-value ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF100HQM, ENCFF107SKX, ENCFF244KNV 714095755 ENCODE Processing Pipeline d4a12d822caa3b8f3dab94d4492039f7 https://www.encodeproject.org/files/ENCFF803ORL/@@download/ENCFF803ORL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF698OHI bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF244KNV 4780880 ENCODE Processing Pipeline 1c474626f3dbae0db69c999f058e939f https://www.encodeproject.org/files/ENCFF698OHI/@@download/ENCFF698OHI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF619ZLP bed narrowPeak conservative idr thresholded peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF698OHI, ENCFF884QMQ, ENCFF890UER 36392 ENCODE Processing Pipeline 4d1ab46db5d4e40511a177c376d45e43 https://www.encodeproject.org/files/ENCFF619ZLP/@@download/ENCFF619ZLP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PHQ bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PHY 430939954 Richard Myers, HAIB a7f3344984b3a6e5376092b31e65644d https://www.encodeproject.org/files/ENCFF000PHQ/@@download/ENCFF000PHQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000PHR bigBed broadPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFU 999905 Richard Myers, HAIB e32f2070fbe9e7eaa47efd8242885ac7 https://www.encodeproject.org/files/ENCFF000PHR/@@download/ENCFF000PHR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000PHS bigBed broadPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFV 1006287 Richard Myers, HAIB bfecbdbfee10b314ef1421f2f930fc72 https://www.encodeproject.org/files/ENCFF000PHS/@@download/ENCFF000PHS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000PHT bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PIB 949591768 Richard Myers, HAIB 4e3dda1ce2cbb49afedbd125db92b5cb https://www.encodeproject.org/files/ENCFF000PHT/@@download/ENCFF000PHT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000PHV bigWig raw signal ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 40525881 Richard Myers, HAIB f6bc595d246e620698177e90e81ef535 https://www.encodeproject.org/files/ENCFF000PHV/@@download/ENCFF000PHV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000PHW bigWig raw signal ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 22583769 Richard Myers, HAIB e89ca53658e665961ec2db1672bdfdfe https://www.encodeproject.org/files/ENCFF000PHW/@@download/ENCFF000PHW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000PHY fastq reads ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 367132933 Richard Myers, HAIB 1c80fcc916728f51f089c44d2c3b53cc https://www.encodeproject.org/files/ENCFF000PHY/@@download/ENCFF000PHY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000PIB fastq reads ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 613157825 Richard Myers, HAIB ce8f4f19bcafbe863bf47877f0eec291 https://www.encodeproject.org/files/ENCFF000PIB/@@download/ENCFF000PIB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UFU bed broadPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 686038 Richard Myers, HAIB d5aed681fb4cbb6ff0cddc57bfa46c21 https://www.encodeproject.org/files/ENCFF001UFU/@@download/ENCFF001UFU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF001UFV bed broadPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 698260 Richard Myers, HAIB 9d2077a42fa7b4b48b52c13985b4cbe6 https://www.encodeproject.org/files/ENCFF001UFV/@@download/ENCFF001UFV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF002CKI bed narrowPeak optimal idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1006721 ENCODE Consortium Analysis Working Group 435af70b9e131037c1925fb19659d220 https://www.encodeproject.org/files/ENCFF002CKI/@@download/ENCFF002CKI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF044DIF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKI 2358724 ENCODE Consortium 79a2d6d88fb37e601059f13e117d3bb8 https://www.encodeproject.org/files/ENCFF044DIF/@@download/ENCFF044DIF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF782PBE bam unfiltered alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHY, ENCFF643CGH 502341382 ENCODE Processing Pipeline 8dc19253e5dca35d234a2113870e8288 https://www.encodeproject.org/files/ENCFF782PBE/@@download/ENCFF782PBE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF332SRJ bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHY, ENCFF643CGH 323539184 ENCODE Processing Pipeline 1cae7a37ca9ff7a26c0c5835c1bda9c6 https://www.encodeproject.org/files/ENCFF332SRJ/@@download/ENCFF332SRJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF401YVR bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIB, ENCFF643CGH 528614038 ENCODE Processing Pipeline 5d0b8377cad4fc8793ff3e9e4627e437 https://www.encodeproject.org/files/ENCFF401YVR/@@download/ENCFF401YVR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF247XZI bam unfiltered alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIB, ENCFF643CGH 851096792 ENCODE Processing Pipeline 79691c0a24cd8bb9e6f64e7ef8c2c53b https://www.encodeproject.org/files/ENCFF247XZI/@@download/ENCFF247XZI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF566DDF bam unfiltered alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHY, ENCFF807MUK 501433418 ENCODE Processing Pipeline d550698e3c2a4e7e98a7ac3ad0a4b804 https://www.encodeproject.org/files/ENCFF566DDF/@@download/ENCFF566DDF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF793JQM bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHY, ENCFF807MUK 323760310 ENCODE Processing Pipeline 6de5fe187e6b49fff81f4d43b94fc6f4 https://www.encodeproject.org/files/ENCFF793JQM/@@download/ENCFF793JQM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF144CKE bam unfiltered alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIB, ENCFF807MUK 848757471 ENCODE Processing Pipeline 9cb79a5825a4392a7106aa68fb535d0d https://www.encodeproject.org/files/ENCFF144CKE/@@download/ENCFF144CKE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF587IJL bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIB, ENCFF807MUK 528808734 ENCODE Processing Pipeline d7f3da992071c0e9027568acc7abaf94 https://www.encodeproject.org/files/ENCFF587IJL/@@download/ENCFF587IJL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF818SCE bigWig signal p-value ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401YVR 562177193 ENCODE Processing Pipeline 1299dac91f90457a64d0c356366cc4ea https://www.encodeproject.org/files/ENCFF818SCE/@@download/ENCFF818SCE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF260LDC bigWig signal p-value ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF332SRJ 529449951 ENCODE Processing Pipeline a3568416c9ba64b52e04a5b0960212ee https://www.encodeproject.org/files/ENCFF260LDC/@@download/ENCFF260LDC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF169QGE bigWig signal p-value ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF332SRJ, ENCFF401YVR 680116390 ENCODE Processing Pipeline 39eca1270b2deaccb3ded916eb26f8ab https://www.encodeproject.org/files/ENCFF169QGE/@@download/ENCFF169QGE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF912HGV bigWig fold change over control ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401YVR 425291893 ENCODE Processing Pipeline c101c87f3c85d16811d06ee53f91ba50 https://www.encodeproject.org/files/ENCFF912HGV/@@download/ENCFF912HGV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF968SFY bigBed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249LIC 10929964 ENCODE Processing Pipeline 064058b8d2b840eddffe99a839d170b3 https://www.encodeproject.org/files/ENCFF968SFY/@@download/ENCFF968SFY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF623UTX bigBed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF465GHM 9550864 ENCODE Processing Pipeline 67ad73d4f8bfdc656220027cc7fdaed0 https://www.encodeproject.org/files/ENCFF623UTX/@@download/ENCFF623UTX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF465GHM bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF332SRJ 4541294 ENCODE Processing Pipeline b06791650b9bf53e27717c4e15138494 https://www.encodeproject.org/files/ENCFF465GHM/@@download/ENCFF465GHM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF648VIL bed narrowPeak conservative idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249LIC, ENCFF286HDS, ENCFF419RSJ, ENCFF465GHM 696650 ENCODE Processing Pipeline aee9e0c4a7d0575402c949f4b5cfb7d7 https://www.encodeproject.org/files/ENCFF648VIL/@@download/ENCFF648VIL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF152BOT bed narrowPeak optimal idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249LIC, ENCFF286HDS, ENCFF419RSJ, ENCFF465GHM 844355 ENCODE Processing Pipeline 1faa3c11f60f906af93089660d86ec97 https://www.encodeproject.org/files/ENCFF152BOT/@@download/ENCFF152BOT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF701JGZ bigWig fold change over control ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF332SRJ 271357260 ENCODE Processing Pipeline 67bf83ae550a4366fb0019688d9bebd5 https://www.encodeproject.org/files/ENCFF701JGZ/@@download/ENCFF701JGZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF286HDS bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF332SRJ, ENCFF401YVR 6068627 ENCODE Processing Pipeline 8f4780d813b3bbd42c41b212b54313a9 https://www.encodeproject.org/files/ENCFF286HDS/@@download/ENCFF286HDS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF163CFH bigWig fold change over control ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF332SRJ, ENCFF401YVR 582103939 ENCODE Processing Pipeline 68d48ac66cdcacba3ff5c3dce252fe54 https://www.encodeproject.org/files/ENCFF163CFH/@@download/ENCFF163CFH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF249LIC bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401YVR 5027153 ENCODE Processing Pipeline 3a0912775249b83b032e5de9e4ef4884 https://www.encodeproject.org/files/ENCFF249LIC/@@download/ENCFF249LIC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF682LEK bigBed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF286HDS 11639120 ENCODE Processing Pipeline 558bb9eff900cc58d34c812d6bb4a1c3 https://www.encodeproject.org/files/ENCFF682LEK/@@download/ENCFF682LEK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF752MBL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF648VIL 1191019 ENCODE Processing Pipeline 3d3dfaaeea31dedff25af7c0b786f847 https://www.encodeproject.org/files/ENCFF752MBL/@@download/ENCFF752MBL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF156AXP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF152BOT 1723916 ENCODE Processing Pipeline 06f8edf40501b82f0e0721effaae9096 https://www.encodeproject.org/files/ENCFF156AXP/@@download/ENCFF156AXP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF198ORM bigWig signal p-value ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL 579053001 ENCODE Processing Pipeline db2a50eb1f189a7e3bf483bc0787cbb9 https://www.encodeproject.org/files/ENCFF198ORM/@@download/ENCFF198ORM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF472OBT bigWig fold change over control ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL 422737206 ENCODE Processing Pipeline 899dfce8b92d38069a36c914cd66f266 https://www.encodeproject.org/files/ENCFF472OBT/@@download/ENCFF472OBT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF496RWW bigWig signal p-value ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF793JQM 572638538 ENCODE Processing Pipeline 1c28b8b09a40d571f3cc6d95d9754025 https://www.encodeproject.org/files/ENCFF496RWW/@@download/ENCFF496RWW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF658RGX bigWig signal p-value ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL, ENCFF793JQM 675364869 ENCODE Processing Pipeline 198fae3935dc2667b1042f1f3366ba8c https://www.encodeproject.org/files/ENCFF658RGX/@@download/ENCFF658RGX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF665ZDL bigWig fold change over control ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF793JQM 268619791 ENCODE Processing Pipeline e96e9ba172096b4f03448aea182900ab https://www.encodeproject.org/files/ENCFF665ZDL/@@download/ENCFF665ZDL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF251GTF bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF793JQM 4431043 ENCODE Processing Pipeline e3de3a2947ccf509e7c2778d2a69d2b3 https://www.encodeproject.org/files/ENCFF251GTF/@@download/ENCFF251GTF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF871KVO bigWig fold change over control ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL, ENCFF793JQM 582662326 ENCODE Processing Pipeline a09d977f123f2f456221e8116f1079b4 https://www.encodeproject.org/files/ENCFF871KVO/@@download/ENCFF871KVO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF997MQT bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL 5132126 ENCODE Processing Pipeline 5ca2e6d07e1b6f5a6600f2c6724c35d7 https://www.encodeproject.org/files/ENCFF997MQT/@@download/ENCFF997MQT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF596END bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL, ENCFF793JQM 6074566 ENCODE Processing Pipeline 2d09d658b540a3920b30da668126dcad https://www.encodeproject.org/files/ENCFF596END/@@download/ENCFF596END.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF160OSA bigBed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF997MQT 11061605 ENCODE Processing Pipeline 69c42eef65daea0ca583d72dbedcc517 https://www.encodeproject.org/files/ENCFF160OSA/@@download/ENCFF160OSA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF966HBD bigBed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF251GTF 9379843 ENCODE Processing Pipeline 478aa501412780e72524bd9867ee75ab https://www.encodeproject.org/files/ENCFF966HBD/@@download/ENCFF966HBD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF958SRR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF236SQL 1500402 ENCODE Processing Pipeline 45d91b542f865ad93b2af9c5aff84071 https://www.encodeproject.org/files/ENCFF958SRR/@@download/ENCFF958SRR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF841ZHE bigBed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF596END 11646061 ENCODE Processing Pipeline f034ac5f1aef57b93446b4b706ccc4d8 https://www.encodeproject.org/files/ENCFF841ZHE/@@download/ENCFF841ZHE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF236SQL bed narrowPeak conservative idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF251GTF, ENCFF596END, ENCFF997MQT 698820 ENCODE Processing Pipeline d19f3e569ecd6ac593f910cc6ddce3d5 https://www.encodeproject.org/files/ENCFF236SQL/@@download/ENCFF236SQL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF978IWS bed narrowPeak optimal idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF251GTF, ENCFF596END, ENCFF997MQT 846246 ENCODE Processing Pipeline 7762c6c6fa31a9c99ee27eedaac3b89f https://www.encodeproject.org/files/ENCFF978IWS/@@download/ENCFF978IWS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF719GSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF978IWS 1731884 ENCODE Processing Pipeline 3838558d6e47ceba60ed7b723a362bcf https://www.encodeproject.org/files/ENCFF719GSZ/@@download/ENCFF719GSZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000WFL bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WFR 995044593 Peggy Farnham, USC b91dcf11ea16d71c0a80ee76010bd4ce https://www.encodeproject.org/files/ENCFF000WFL/@@download/ENCFF000WFL.bam hg19 archived borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF000WFM bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WFZ 1254160660 Peggy Farnham, USC 3236ffaaff5e5c719444d8c107ca5c77 https://www.encodeproject.org/files/ENCFF000WFM/@@download/ENCFF000WFM.bam hg19 archived borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF000WFN bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFP 135795 Peggy Farnham, USC 05812990cc22b5a685709c6b5e2425f2 https://www.encodeproject.org/files/ENCFF000WFN/@@download/ENCFF000WFN.bigBed hg19 archived borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF000WFO bigWig signal ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 447946890 Peggy Farnham, USC 842bfaa487e655a831ce32dacd0a00e1 https://www.encodeproject.org/files/ENCFF000WFO/@@download/ENCFF000WFO.bigWig hg19 archived borderline replicate concordance, low read depth missing derived_from control insufficient read depth, insufficient read length ENCFF000WFR fastq reads ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 754952111 Peggy Farnham, USC ef29b0894efe82f72d8707b5580c5ace https://www.encodeproject.org/files/ENCFF000WFR/@@download/ENCFF000WFR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released borderline replicate concordance, low read depth, inconsistent control read length control insufficient read depth, insufficient read length ENCFF000WFZ fastq reads ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 953215497 Peggy Farnham, USC d98f6eeee0f015b32273fc58128fef65 https://www.encodeproject.org/files/ENCFF000WFZ/@@download/ENCFF000WFZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released borderline replicate concordance, low read depth, inconsistent control read length control insufficient read depth, insufficient read length ENCFF001VFP bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 37677 Peggy Farnham, USC ce54a52e0a56b4f3a28f5745e69f9142 https://www.encodeproject.org/files/ENCFF001VFP/@@download/ENCFF001VFP.bed.gz hg19 archived borderline replicate concordance, low read depth missing derived_from control insufficient read depth, insufficient read length ENCFF002CPS bed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 34405 ENCODE Consortium Analysis Working Group be45adf93388769e6fecf0357e511b77 https://www.encodeproject.org/files/ENCFF002CPS/@@download/ENCFF002CPS.bed.gz hg19 archived borderline replicate concordance, low read depth missing derived_from control insufficient read depth, insufficient read length ENCFF362AXW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPS 174981 ENCODE Consortium bcf995f4b77a253890d133f6817c2723 https://www.encodeproject.org/files/ENCFF362AXW/@@download/ENCFF362AXW.bigBed hg19 archived borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF199XSZ bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF643CGH 483143173 ENCODE Processing Pipeline 54a74f7d8a47a7edf8b7f78c64ecd1e1 https://www.encodeproject.org/files/ENCFF199XSZ/@@download/ENCFF199XSZ.bam GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF485BYB bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF643CGH 616534131 ENCODE Processing Pipeline ba6995285912c14b840233c95a6b2024 https://www.encodeproject.org/files/ENCFF485BYB/@@download/ENCFF485BYB.bam GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF971AIC bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF643CGH 937274124 ENCODE Processing Pipeline 2c925f5537d31e6d846c4558c56b1ca0 https://www.encodeproject.org/files/ENCFF971AIC/@@download/ENCFF971AIC.bam GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF987VYJ bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF643CGH 1179069074 ENCODE Processing Pipeline 02b2c969e452d178a16af5cdd1b1d8bd https://www.encodeproject.org/files/ENCFF987VYJ/@@download/ENCFF987VYJ.bam GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF123VIR bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF807MUK 934908288 ENCODE Processing Pipeline a9af0e267087ec9980cddf99ac39eac2 https://www.encodeproject.org/files/ENCFF123VIR/@@download/ENCFF123VIR.bam hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF817KGL bam unfiltered alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF807MUK 1175412328 ENCODE Processing Pipeline 78297941dd1b05df2327530213f412e8 https://www.encodeproject.org/files/ENCFF817KGL/@@download/ENCFF817KGL.bam hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF289RZG bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF807MUK 483140887 ENCODE Processing Pipeline ff4513f2424297334965ebc18e248462 https://www.encodeproject.org/files/ENCFF289RZG/@@download/ENCFF289RZG.bam hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF236GMW bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF807MUK 616683061 ENCODE Processing Pipeline d5c79d04eace36d8c32c2673de0a8bbd https://www.encodeproject.org/files/ENCFF236GMW/@@download/ENCFF236GMW.bam hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF208TMB bed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF258YSG, ENCFF423FMQ, ENCFF973NBX 14288 ENCODE Processing Pipeline 449b514fad2d440af822c75c9f1db518 https://www.encodeproject.org/files/ENCFF208TMB/@@download/ENCFF208TMB.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF588OWL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF208TMB 66906 ENCODE Processing Pipeline 28339a6fb37ed3032345c94e44364607 https://www.encodeproject.org/files/ENCFF588OWL/@@download/ENCFF588OWL.bigBed hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF033SNP bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 218222749 ENCODE Processing Pipeline 5a0c15380b2e5bcaa961ee8d97203de0 https://www.encodeproject.org/files/ENCFF033SNP/@@download/ENCFF033SNP.bigWig hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF861LRM bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236GMW, ENCFF289RZG, ENCFF420MOQ 397709039 ENCODE Processing Pipeline 55a761e334ea45688de8c729bf86f800 https://www.encodeproject.org/files/ENCFF861LRM/@@download/ENCFF861LRM.bigWig hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF423FMQ bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 4062549 ENCODE Processing Pipeline 0db29d195cd81743099c7368d530b510 https://www.encodeproject.org/files/ENCFF423FMQ/@@download/ENCFF423FMQ.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF721FTG bed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF258YSG, ENCFF423FMQ, ENCFF973NBX 20872 ENCODE Processing Pipeline abe930e6ea87a09befc3de1e721f6948 https://www.encodeproject.org/files/ENCFF721FTG/@@download/ENCFF721FTG.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF127HCW bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 216583705 ENCODE Processing Pipeline b34497934d89b3bf5bac96be178afc40 https://www.encodeproject.org/files/ENCFF127HCW/@@download/ENCFF127HCW.bigWig hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF857ALS bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 230884839 ENCODE Processing Pipeline b102e08a4da912c9128ed3195ed67ce3 https://www.encodeproject.org/files/ENCFF857ALS/@@download/ENCFF857ALS.bigWig hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF368CFQ bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF423FMQ 10276977 ENCODE Processing Pipeline fe1814499405455e00a2e42faac5ff8a https://www.encodeproject.org/files/ENCFF368CFQ/@@download/ENCFF368CFQ.bigBed hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF105EIG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF721FTG 76283 ENCODE Processing Pipeline c00b00f7578c91524083b67aeb2fa528 https://www.encodeproject.org/files/ENCFF105EIG/@@download/ENCFF105EIG.bigBed hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF932FUV bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236GMW, ENCFF289RZG, ENCFF420MOQ 201107945 ENCODE Processing Pipeline 65f01854b5b901bb38d68e91979c6ae1 https://www.encodeproject.org/files/ENCFF932FUV/@@download/ENCFF932FUV.bigWig hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF560NWR bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF199XSZ 213361775 ENCODE Processing Pipeline 5ae7d19d8fd9501bc063c56bd84ba2f0 https://www.encodeproject.org/files/ENCFF560NWR/@@download/ENCFF560NWR.bigWig GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF150BGK bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF485BYB 3997730 ENCODE Processing Pipeline fcbe4c6b4feaea25a15ea9f810748372 https://www.encodeproject.org/files/ENCFF150BGK/@@download/ENCFF150BGK.bed.gz GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF548GRF bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF199XSZ, ENCFF485BYB 4713705 ENCODE Processing Pipeline d56741da5522859cc6164abff9436fc1 https://www.encodeproject.org/files/ENCFF548GRF/@@download/ENCFF548GRF.bed.gz GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF141SUI bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 221300361 ENCODE Processing Pipeline c5193e147be2194662b4c428a6ae3789 https://www.encodeproject.org/files/ENCFF141SUI/@@download/ENCFF141SUI.bigWig hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF973NBX bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 3997830 ENCODE Processing Pipeline 03cc4cb6dd5e79225c390245c59eeb18 https://www.encodeproject.org/files/ENCFF973NBX/@@download/ENCFF973NBX.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF258YSG bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236GMW, ENCFF289RZG, ENCFF420MOQ 4706612 ENCODE Processing Pipeline 1c34d9a2fd97f51b3d9f5a3763be979d https://www.encodeproject.org/files/ENCFF258YSG/@@download/ENCFF258YSG.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF821QXQ bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF973NBX 10377237 ENCODE Processing Pipeline 2a6aea8c92b43f7493696fdd5572b327 https://www.encodeproject.org/files/ENCFF821QXQ/@@download/ENCFF821QXQ.bigBed hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF363NXG bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF258YSG 11009198 ENCODE Processing Pipeline 07574c4dc5343d512a4130d41c0784e6 https://www.encodeproject.org/files/ENCFF363NXG/@@download/ENCFF363NXG.bigBed hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF098SQG bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF199XSZ 221069756 ENCODE Processing Pipeline bf5e8da17f6fb68c7d8e24971001aaaa https://www.encodeproject.org/files/ENCFF098SQG/@@download/ENCFF098SQG.bigWig GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF605NTP bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF485BYB 217653160 ENCODE Processing Pipeline 5b6848fd9777869a9b0d5e124d3d6819 https://www.encodeproject.org/files/ENCFF605NTP/@@download/ENCFF605NTP.bigWig GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF865NON bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF150BGK 10426342 ENCODE Processing Pipeline 76c44f56ee1064d4d9c84092e1de0c16 https://www.encodeproject.org/files/ENCFF865NON/@@download/ENCFF865NON.bigBed GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF546LNP bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548GRF 11013461 ENCODE Processing Pipeline da717795fa7e69b3621be0645d48a2ac https://www.encodeproject.org/files/ENCFF546LNP/@@download/ENCFF546LNP.bigBed GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF434HVY bed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF150BGK, ENCFF419RSJ, ENCFF548GRF, ENCFF589LYY 20256 ENCODE Processing Pipeline b777a21430fdf491cb5da540cc6afe62 https://www.encodeproject.org/files/ENCFF434HVY/@@download/ENCFF434HVY.bed.gz GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF816IBZ bigWig signal p-value ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF199XSZ, ENCFF485BYB 225427756 ENCODE Processing Pipeline 736904b946b42d143849ceb4ea14d990 https://www.encodeproject.org/files/ENCFF816IBZ/@@download/ENCFF816IBZ.bigWig GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF015IGW bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF485BYB 230062905 ENCODE Processing Pipeline ea41741b45ad62c2f22774b62347f9b0 https://www.encodeproject.org/files/ENCFF015IGW/@@download/ENCFF015IGW.bigWig GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF725QBH bigWig fold change over control ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF199XSZ, ENCFF485BYB 397777347 ENCODE Processing Pipeline c3ddf1562482b42f071ed7270509e499 https://www.encodeproject.org/files/ENCFF725QBH/@@download/ENCFF725QBH.bigWig GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF170FYU bigBed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF589LYY 10213516 ENCODE Processing Pipeline 7bd92178011ee1115935e01267e14205 https://www.encodeproject.org/files/ENCFF170FYU/@@download/ENCFF170FYU.bigBed GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF589LYY bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF199XSZ 4002131 ENCODE Processing Pipeline 712b6055b8c1388a54dc6ebbc08064e2 https://www.encodeproject.org/files/ENCFF589LYY/@@download/ENCFF589LYY.bed.gz GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF261WWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF434HVY 75992 ENCODE Processing Pipeline 63fd616ad16548c0437b2ddc31053bfd https://www.encodeproject.org/files/ENCFF261WWV/@@download/ENCFF261WWV.bigBed GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF892GAT bed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF150BGK, ENCFF419RSJ, ENCFF548GRF, ENCFF589LYY 14325 ENCODE Processing Pipeline bbc69d68325325f82e3ccbac810d00bc https://www.encodeproject.org/files/ENCFF892GAT/@@download/ENCFF892GAT.bed.gz GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF992PRK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF892GAT 67856 ENCODE Processing Pipeline 91c167f3d0338c91dbb3d2b2e615e630 https://www.encodeproject.org/files/ENCFF992PRK/@@download/ENCFF992PRK.bigBed GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF001HUI bam alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUW 828820329 John Stamatoyannopoulos, UW 5b980e11c9ccca7e3dc959cbddb71ec0 https://www.encodeproject.org/files/ENCFF001HUI/@@download/ENCFF001HUI.bam hg19 archived low read length, low read depth ENCFF001HUJ bigBed broadPeak hotspots ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XTA 5832186 John Stamatoyannopoulos, UW 6573495da6550691c772f21251e34451 https://www.encodeproject.org/files/ENCFF001HUJ/@@download/ENCFF001HUJ.bigBed hg19 archived low read length, low read depth ENCFF001HUK bigBed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XSZ 1047704 John Stamatoyannopoulos, UW 4129cbdad8b3e1faa1ea9cc6cccb8fec https://www.encodeproject.org/files/ENCFF001HUK/@@download/ENCFF001HUK.bigBed hg19 archived low read length, low read depth ENCFF001HUL bigWig raw signal ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 153761743 John Stamatoyannopoulos, UW 83c01ad3412fc03b0554a69f0e9ee65a https://www.encodeproject.org/files/ENCFF001HUL/@@download/ENCFF001HUL.bigWig hg19 archived low read length, low read depth ENCFF001HUW fastq reads ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 1003438599 John Stamatoyannopoulos, UW f46b3e06e813e26593f35b58c92e8c33 https://www.encodeproject.org/files/ENCFF001HUW/@@download/ENCFF001HUW.fastq.gz Illumina Genome Analyzer /files/ENCFF001HVB/ released low read length, low read depth ENCFF001XSZ bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 735831 John Stamatoyannopoulos, UW 3fa9131f818463a639f99a3a80fc74a0 https://www.encodeproject.org/files/ENCFF001XSZ/@@download/ENCFF001XSZ.bed.gz hg19 archived low read length, low read depth ENCFF001XTA bed broadPeak hotspots ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 3331000 John Stamatoyannopoulos, UW d10a5d5c99a5c26823cf4906b06ac796 https://www.encodeproject.org/files/ENCFF001XTA/@@download/ENCFF001XTA.bed.gz hg19 archived low read length, low read depth ENCFF002DDL bed narrowPeak optimal idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 726401 ENCODE Consortium Analysis Working Group 8424eaf10728844d829f289c279d647d https://www.encodeproject.org/files/ENCFF002DDL/@@download/ENCFF002DDL.bed.gz hg19 archived low read length, low read depth ENCFF976KRA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF002DDL 1278988 ENCODE Consortium 492ec01d263fd68fe52200a98fdf461a https://www.encodeproject.org/files/ENCFF976KRA/@@download/ENCFF976KRA.bigBed hg19 archived low read length, low read depth ENCFF821DUU bam unfiltered alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUW, ENCFF807MUK 1132981333 ENCODE Processing Pipeline 1e5c3fae8241c18f071ff1f8a077203b https://www.encodeproject.org/files/ENCFF821DUU/@@download/ENCFF821DUU.bam hg19 released low read length, low read depth ENCFF522BQD bam alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUW, ENCFF807MUK 729798514 ENCODE Processing Pipeline e4d46ddac407128098ee5b2c05850a27 https://www.encodeproject.org/files/ENCFF522BQD/@@download/ENCFF522BQD.bam hg19 released low read length, low read depth ENCFF407MVV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001TDO, ENCFF049FHU 614549 ENCODE Processing Pipeline 09d559f3552d29d0d40df6440e85c305 https://www.encodeproject.org/files/ENCFF407MVV/@@download/ENCFF407MVV.bed.gz hg19 released low read length, low read depth ENCFF355STH bigWig signal p-value ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF010VRA, ENCFF522BQD 447053810 ENCODE Processing Pipeline 9539af441131e19ae208c05aeb01af14 https://www.encodeproject.org/files/ENCFF355STH/@@download/ENCFF355STH.bigWig hg19 released low read length, low read depth ENCFF026SLI bigBed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF049FHU 10663173 ENCODE Processing Pipeline 7f8a7d042cae96585ab209491f9a67af https://www.encodeproject.org/files/ENCFF026SLI/@@download/ENCFF026SLI.bigBed hg19 released low read length, low read depth ENCFF936YIU bigWig fold change over control ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF010VRA, ENCFF522BQD 334473259 ENCODE Processing Pipeline 619ada93f05b44d82b1655d21fe720ff https://www.encodeproject.org/files/ENCFF936YIU/@@download/ENCFF936YIU.bigWig hg19 released low read length, low read depth ENCFF199LDJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF407MVV 1138635 ENCODE Processing Pipeline b4348938a079a8226a194308844faad9 https://www.encodeproject.org/files/ENCFF199LDJ/@@download/ENCFF199LDJ.bigBed hg19 released low read length, low read depth ENCFF186DVQ bam unfiltered alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUW, ENCFF643CGH 1137428669 ENCODE Processing Pipeline 6600f53db26552c45c4906c0925925e2 https://www.encodeproject.org/files/ENCFF186DVQ/@@download/ENCFF186DVQ.bam GRCh38 released low read length, low read depth ENCFF116ICU bam alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUW, ENCFF643CGH 729448148 ENCODE Processing Pipeline 622f8ad99e0d5feb75064dccd13d5174 https://www.encodeproject.org/files/ENCFF116ICU/@@download/ENCFF116ICU.bam GRCh38 released low read length, low read depth ENCFF983YOQ bigWig signal p-value ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF116ICU, ENCFF312FHK 433460702 ENCODE Processing Pipeline a6f4b445c5e69c22cea571f34e61c29d https://www.encodeproject.org/files/ENCFF983YOQ/@@download/ENCFF983YOQ.bigWig GRCh38 released low read length, low read depth ENCFF838CQI bigBed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF565MGR 10746165 ENCODE Processing Pipeline c7ed2fa12248fca30962fce39695c4fe https://www.encodeproject.org/files/ENCFF838CQI/@@download/ENCFF838CQI.bigBed GRCh38 released low read length, low read depth ENCFF977ZXO bigWig fold change over control ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF116ICU, ENCFF312FHK 337784366 ENCODE Processing Pipeline 92eb3c7240d7db6a22b193c717a693c9 https://www.encodeproject.org/files/ENCFF977ZXO/@@download/ENCFF977ZXO.bigWig GRCh38 released low read length, low read depth ENCFF456PDQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF419RSJ, ENCFF565MGR 637141 ENCODE Processing Pipeline 13030b135fad7ad9d9391e55f741cdcc https://www.encodeproject.org/files/ENCFF456PDQ/@@download/ENCFF456PDQ.bed.gz GRCh38 released low read length, low read depth ENCFF220MHX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF456PDQ 1182102 ENCODE Processing Pipeline e6583d4187952afd6cdc821d1ddf5097 https://www.encodeproject.org/files/ENCFF220MHX/@@download/ENCFF220MHX.bigBed GRCh38 released low read length, low read depth ENCFF565MGR bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF116ICU, ENCFF312FHK 4356348 ENCODE Processing Pipeline 07393734d801b63a26f8d9627ecd4935 https://www.encodeproject.org/files/ENCFF565MGR/@@download/ENCFF565MGR.bed.gz GRCh38 released low read length, low read depth ENCFF049FHU bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF010VRA, ENCFF522BQD 4293374 ENCODE Processing Pipeline edcc1b894b2997953c0901cfac670f49 https://www.encodeproject.org/files/ENCFF049FHU/@@download/ENCFF049FHU.bed.gz hg19 released low read length, low read depth ENCFF000NWO bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NXA 446351594 Richard Myers, HAIB 445b6a8ad57ecd0f738a45dd315d2a71 https://www.encodeproject.org/files/ENCFF000NWO/@@download/ENCFF000NWO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NWP bigBed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXI 501789 Richard Myers, HAIB e04095acd09e023c6dabc4eb709356f2 https://www.encodeproject.org/files/ENCFF000NWP/@@download/ENCFF000NWP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NWQ bigBed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXJ 351826 Richard Myers, HAIB 196739b782dfbe669a059ad94e1d1589 https://www.encodeproject.org/files/ENCFF000NWQ/@@download/ENCFF000NWQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NWR bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NXC 782651201 Richard Myers, HAIB e2756e0740c6f7524dd7e494512f995f https://www.encodeproject.org/files/ENCFF000NWR/@@download/ENCFF000NWR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NWS bigWig raw signal ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 11234028 Richard Myers, HAIB c7a49123e55104b113589646d8736f4a https://www.encodeproject.org/files/ENCFF000NWS/@@download/ENCFF000NWS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000NWU bigWig raw signal ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 17121973 Richard Myers, HAIB 686f63e1eec2e91fff8ae2948eb63fe2 https://www.encodeproject.org/files/ENCFF000NWU/@@download/ENCFF000NWU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NXA fastq reads ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 395056731 Richard Myers, HAIB 1ca98854b5773e20d8d1ecf4559b1f4b https://www.encodeproject.org/files/ENCFF000NXA/@@download/ENCFF000NXA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NXC fastq reads ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 741553023 Richard Myers, HAIB 59927ab7d09d1f0c8adc231c0f76123c https://www.encodeproject.org/files/ENCFF000NXC/@@download/ENCFF000NXC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001TXI bed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 287783 Richard Myers, HAIB 87aafa7d49a5ba352c1c578c89643d1f https://www.encodeproject.org/files/ENCFF001TXI/@@download/ENCFF001TXI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001TXJ bed broadPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 165195 Richard Myers, HAIB 6279041a2ad3b6324f65adb1e89a026f https://www.encodeproject.org/files/ENCFF001TXJ/@@download/ENCFF001TXJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CHC bed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 341744 ENCODE Consortium Analysis Working Group 54631587162d50440ad8b95c7c7e85c5 https://www.encodeproject.org/files/ENCFF002CHC/@@download/ENCFF002CHC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF217YUT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHC 782365 ENCODE Consortium b742ab5eaf6250388d9dff122375fdff https://www.encodeproject.org/files/ENCFF217YUT/@@download/ENCFF217YUT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF105SCN bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF643CGH 516739571 ENCODE Processing Pipeline bd30c26e0f36fe58b150366a6eee4bf3 https://www.encodeproject.org/files/ENCFF105SCN/@@download/ENCFF105SCN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF510YAI bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF643CGH 287797489 ENCODE Processing Pipeline 002600767b501270177d2fd821d863db https://www.encodeproject.org/files/ENCFF510YAI/@@download/ENCFF510YAI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF405ENX bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF643CGH 937125696 ENCODE Processing Pipeline c23c6492a2b55e5bd573212c45500309 https://www.encodeproject.org/files/ENCFF405ENX/@@download/ENCFF405ENX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF476CBG bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF643CGH 412043094 ENCODE Processing Pipeline d048bf26f111ee7328da127541ae1f38 https://www.encodeproject.org/files/ENCFF476CBG/@@download/ENCFF476CBG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF012YAB bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF807MUK 516623832 ENCODE Processing Pipeline 3e9f3955536837049220ae4a582dc106 https://www.encodeproject.org/files/ENCFF012YAB/@@download/ENCFF012YAB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF359HKJ bam unfiltered alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF807MUK 936089123 ENCODE Processing Pipeline 000ea03e8831b467297741b1579343fc https://www.encodeproject.org/files/ENCFF359HKJ/@@download/ENCFF359HKJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF651UZJ bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF807MUK 284898385 ENCODE Processing Pipeline 2dcece7fa644c33b3c9ec91a7faf6918 https://www.encodeproject.org/files/ENCFF651UZJ/@@download/ENCFF651UZJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF659SUJ bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF807MUK 408553237 ENCODE Processing Pipeline 0b9a0c159415516cfd2c386b184fc260 https://www.encodeproject.org/files/ENCFF659SUJ/@@download/ENCFF659SUJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF972LZR bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF510YAI 183493900 ENCODE Processing Pipeline b87b5a74db12ad5563bece17cbf8a22f https://www.encodeproject.org/files/ENCFF972LZR/@@download/ENCFF972LZR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF306VZV bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF510YAI 309767740 ENCODE Processing Pipeline b0baaba7aa53414114762eb526a65b6c https://www.encodeproject.org/files/ENCFF306VZV/@@download/ENCFF306VZV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF099YNL bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF476CBG, ENCFF488YYE 244480755 ENCODE Processing Pipeline b146d7854dfdd6e982ff6b120d519ed8 https://www.encodeproject.org/files/ENCFF099YNL/@@download/ENCFF099YNL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF128TCK bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF476CBG, ENCFF488YYE 319444926 ENCODE Processing Pipeline 69f27c133ac66e2afb8b1926a8272c0f https://www.encodeproject.org/files/ENCFF128TCK/@@download/ENCFF128TCK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF923AZM bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF476CBG, ENCFF488YYE, ENCFF510YAI 452512456 ENCODE Processing Pipeline 272ef5b82356db22bec167d19ef48d19 https://www.encodeproject.org/files/ENCFF923AZM/@@download/ENCFF923AZM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF373KCT bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF476CBG, ENCFF488YYE, ENCFF510YAI 372488881 ENCODE Processing Pipeline b28e55cd97405791849e7edf5698cd14 https://www.encodeproject.org/files/ENCFF373KCT/@@download/ENCFF373KCT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF792NPH bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF510YAI 3971799 ENCODE Processing Pipeline df1194e5e9d9fba66ffcb9b10889d96b https://www.encodeproject.org/files/ENCFF792NPH/@@download/ENCFF792NPH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF687SGU bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF476CBG, ENCFF488YYE, ENCFF510YAI 4917102 ENCODE Processing Pipeline 6d27c319f535e3e0f0b25cd69aa097f0 https://www.encodeproject.org/files/ENCFF687SGU/@@download/ENCFF687SGU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF747WVH bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF792NPH 8794841 ENCODE Processing Pipeline 1e61b85f4b8db26b8ece738a850fe4c1 https://www.encodeproject.org/files/ENCFF747WVH/@@download/ENCFF747WVH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF385QJP bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF476CBG, ENCFF488YYE 4235606 ENCODE Processing Pipeline 706dd0c594eeb290fa808a7739b0c7e1 https://www.encodeproject.org/files/ENCFF385QJP/@@download/ENCFF385QJP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF214EGO bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF385QJP 10081503 ENCODE Processing Pipeline 90655e5e75fb2cdf83f2abad32edbd01 https://www.encodeproject.org/files/ENCFF214EGO/@@download/ENCFF214EGO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF921HDK bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF687SGU 10724607 ENCODE Processing Pipeline 5c7ed3e6859a49ce772de6b07472dc94 https://www.encodeproject.org/files/ENCFF921HDK/@@download/ENCFF921HDK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF151PNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF958GXF 660225 ENCODE Processing Pipeline 7732aaadcd7532128a9c804372b7c374 https://www.encodeproject.org/files/ENCFF151PNI/@@download/ENCFF151PNI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF131JIX bed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF385QJP, ENCFF419RSJ, ENCFF687SGU, ENCFF792NPH 302801 ENCODE Processing Pipeline 33c168bab17da8e2d591665919dd7c09 https://www.encodeproject.org/files/ENCFF131JIX/@@download/ENCFF131JIX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF254YDX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF131JIX 569008 ENCODE Processing Pipeline c8648a17dcbed263df674d58c2399371 https://www.encodeproject.org/files/ENCFF254YDX/@@download/ENCFF254YDX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF958GXF bed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF385QJP, ENCFF419RSJ, ENCFF687SGU, ENCFF792NPH 368392 ENCODE Processing Pipeline 1435a07403e10acf4e6191d5d35e43d5 https://www.encodeproject.org/files/ENCFF958GXF/@@download/ENCFF958GXF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF437KRD bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651UZJ, ENCFF659SUJ, ENCFF963CVB 456402743 ENCODE Processing Pipeline 115fbff273448432eb4bf54cacf66954 https://www.encodeproject.org/files/ENCFF437KRD/@@download/ENCFF437KRD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF158YLU bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 241475091 ENCODE Processing Pipeline 981811cba73402a0deaef18344a2bf23 https://www.encodeproject.org/files/ENCFF158YLU/@@download/ENCFF158YLU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF951TLZ bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 3978804 ENCODE Processing Pipeline 331ed73930e4199b54d6e1ee1cfaac72 https://www.encodeproject.org/files/ENCFF951TLZ/@@download/ENCFF951TLZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF653YGB bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 336800889 ENCODE Processing Pipeline 47ae39cd1962054362222355fc0609d4 https://www.encodeproject.org/files/ENCFF653YGB/@@download/ENCFF653YGB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF975FYL bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651UZJ, ENCFF659SUJ, ENCFF963CVB 373260938 ENCODE Processing Pipeline 1c7777fd8a12d8690f218030097a3b1e https://www.encodeproject.org/files/ENCFF975FYL/@@download/ENCFF975FYL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF328YWR bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF980AUY 10123857 ENCODE Processing Pipeline 0c7548a5013a83aaa3b4256eb0cdeea7 https://www.encodeproject.org/files/ENCFF328YWR/@@download/ENCFF328YWR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF396NJG bigWig signal p-value ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 329324652 ENCODE Processing Pipeline 380811e82c9c082d37681b097421eaee https://www.encodeproject.org/files/ENCFF396NJG/@@download/ENCFF396NJG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF598MLP bigWig fold change over control ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 187536656 ENCODE Processing Pipeline 27143670340cb59afa2c9a1d2f498c98 https://www.encodeproject.org/files/ENCFF598MLP/@@download/ENCFF598MLP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF980AUY bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 4272041 ENCODE Processing Pipeline b08b9732fcd3e20e5a40be4fd0ac8b01 https://www.encodeproject.org/files/ENCFF980AUY/@@download/ENCFF980AUY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF402EQI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF811FYS 563172 ENCODE Processing Pipeline 98952b874cd796b3345e494862d7e98c https://www.encodeproject.org/files/ENCFF402EQI/@@download/ENCFF402EQI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF328QLX bed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099ZTD, ENCFF951TLZ, ENCFF980AUY 367975 ENCODE Processing Pipeline cff7dbd079130eb4d37ffab592deaa84 https://www.encodeproject.org/files/ENCFF328QLX/@@download/ENCFF328QLX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF099ZTD bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF651UZJ, ENCFF659SUJ, ENCFF963CVB 4920960 ENCODE Processing Pipeline a5652b7819332660bd0351cca77e9781 https://www.encodeproject.org/files/ENCFF099ZTD/@@download/ENCFF099ZTD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF303ARN bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF951TLZ 8807842 ENCODE Processing Pipeline 63085a52e94ce95018bfa0215c0d68f5 https://www.encodeproject.org/files/ENCFF303ARN/@@download/ENCFF303ARN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF073OTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF328QLX 661644 ENCODE Processing Pipeline 99777cb92fd506212b541ffc795eae06 https://www.encodeproject.org/files/ENCFF073OTI/@@download/ENCFF073OTI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF088IZI bigBed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF099ZTD 10732602 ENCODE Processing Pipeline 3f3ffc59fa87a5250b255bae31769a49 https://www.encodeproject.org/files/ENCFF088IZI/@@download/ENCFF088IZI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF811FYS bed narrowPeak conservative idr thresholded peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099ZTD, ENCFF951TLZ, ENCFF980AUY 297618 ENCODE Processing Pipeline 0b59fe5860fe163187f5ac959f6d0a5e https://www.encodeproject.org/files/ENCFF811FYS/@@download/ENCFF811FYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NEB bam alignments ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NEY 2042702154 Richard Myers, HAIB 5a8a9840535d1e51f69e76fabe51a50e https://www.encodeproject.org/files/ENCFF000NEB/@@download/ENCFF000NEB.bam hg19 released biological replicates with identical biosample ENCFF000NEC bigBed broadPeak peaks ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TTD 208241 Richard Myers, HAIB ba190ca087bd5acac919ddfbe890ed96 https://www.encodeproject.org/files/ENCFF000NEC/@@download/ENCFF000NEC.bigBed hg19 released biological replicates with identical biosample ENCFF000NED bam alignments ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NEP 1835334200 Richard Myers, HAIB 6dc15fa03cf2702d656e350440f26c30 https://www.encodeproject.org/files/ENCFF000NED/@@download/ENCFF000NED.bam hg19 released biological replicates with identical biosample ENCFF000NEE bigBed broadPeak peaks ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TTE 236208 Richard Myers, HAIB bf7c4ec6231d4efaee152c03f7cccc82 https://www.encodeproject.org/files/ENCFF000NEE/@@download/ENCFF000NEE.bigBed hg19 released biological replicates with identical biosample ENCFF000NEF bigWig raw signal ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 247239110 Richard Myers, HAIB e366d4c56b4ceeaf353f0f1de0be7ebb https://www.encodeproject.org/files/ENCFF000NEF/@@download/ENCFF000NEF.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NEH bigWig raw signal ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 225613071 Richard Myers, HAIB 4925c90e9b1dbdb50b1ec29d25cf07b5 https://www.encodeproject.org/files/ENCFF000NEH/@@download/ENCFF000NEH.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NEP fastq reads ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1893315906 Richard Myers, HAIB 06d5f8c2620fd23b8167be8b6ad7272c https://www.encodeproject.org/files/ENCFF000NEP/@@download/ENCFF000NEP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF000NEY fastq reads ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2083396888 Richard Myers, HAIB 2fa4ac615439cc2f850c540a897bd0aa https://www.encodeproject.org/files/ENCFF000NEY/@@download/ENCFF000NEY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF001TTD bed broadPeak peaks ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 92767 Richard Myers, HAIB ee9568ebee1a0d634528d2abb00bc1f1 https://www.encodeproject.org/files/ENCFF001TTD/@@download/ENCFF001TTD.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TTE bed broadPeak peaks ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 99291 Richard Myers, HAIB bb091b855f10a5af4f70281903ac3ac4 https://www.encodeproject.org/files/ENCFF001TTE/@@download/ENCFF001TTE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000XMY bam alignments ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XNI 1051694615 Peggy Farnham, USC aa38dedde915852fe43ccfb5b900d5d8 https://www.encodeproject.org/files/ENCFF000XMY/@@download/ENCFF000XMY.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XMZ bam alignments ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XNF 978734134 Peggy Farnham, USC 7e14564056405e5d0f31919a7be9cdbe https://www.encodeproject.org/files/ENCFF000XMZ/@@download/ENCFF000XMZ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XNA bigBed narrowPeak peaks ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJO 126553 Peggy Farnham, USC dc65e2ed36e3a753d92ff6666ee097ab https://www.encodeproject.org/files/ENCFF000XNA/@@download/ENCFF000XNA.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XNB bigWig signal ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 398296590 Peggy Farnham, USC 262aa07fc12997260609a53d96318bb9 https://www.encodeproject.org/files/ENCFF000XNB/@@download/ENCFF000XNB.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XNF fastq reads ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 786344577 Peggy Farnham, USC 53796e5760085bf7bcf5e2851f76fb26 https://www.encodeproject.org/files/ENCFF000XNF/@@download/ENCFF000XNF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XNI fastq reads ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 804490687 Peggy Farnham, USC bc78ae473a0acadb8e3be742f183e3a1 https://www.encodeproject.org/files/ENCFF000XNI/@@download/ENCFF000XNI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VJO bed narrowPeak peaks ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 31693 Peggy Farnham, USC 018ec46ccc5869ea1b2a5552d1d13d93 https://www.encodeproject.org/files/ENCFF001VJO/@@download/ENCFF001VJO.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CTM bed narrowPeak optimal idr thresholded peaks ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 54026 ENCODE Consortium Analysis Working Group 52ff4a1ff05aae193e3ef1b3b89c71a9 https://www.encodeproject.org/files/ENCFF002CTM/@@download/ENCFF002CTM.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF079EHE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTM 197430 ENCODE Consortium ee638e7785e41b8b7a0fea2d310feb45 https://www.encodeproject.org/files/ENCFF079EHE/@@download/ENCFF079EHE.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000WNK bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WNR 186269262 Michael Snyder, Stanford 0ab5ab8e2a7765699fa824de77b00c9e https://www.encodeproject.org/files/ENCFF000WNK/@@download/ENCFF000WNK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNL bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WOA 982408577 Michael Snyder, Stanford 0d39ef7706e26073452908d25b5e9f65 https://www.encodeproject.org/files/ENCFF000WNL/@@download/ENCFF000WNL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNM bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WNZ 380109862 Michael Snyder, Stanford f18b040f0c9d61b553a1a20d684d4b81 https://www.encodeproject.org/files/ENCFF000WNM/@@download/ENCFF000WNM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNN bigBed narrowPeak peaks ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGH 729724 Michael Snyder, Stanford 70665ff64aeead80c188795c4237a3ff https://www.encodeproject.org/files/ENCFF000WNN/@@download/ENCFF000WNN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNO bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WOD 722997710 Michael Snyder, Stanford 6846f416f2d16b56b9ca96909d81b409 https://www.encodeproject.org/files/ENCFF000WNO/@@download/ENCFF000WNO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNR fastq reads ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 142257252 Michael Snyder, Stanford e95c8c67adb9360168e1c6641f4588fb https://www.encodeproject.org/files/ENCFF000WNR/@@download/ENCFF000WNR.fastq.gz Illumina Genome Analyzer /files/ENCFF000WNS/ released biological replicates with identical biosample insufficient read length ENCFF000WNT bigWig signal ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 510965116 Michael Snyder, Stanford 26b0ab6d893a040d9fe4aae08db42cf4 https://www.encodeproject.org/files/ENCFF000WNT/@@download/ENCFF000WNT.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WNZ fastq reads ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 297719487 Michael Snyder, Stanford 9095467851bf05174053e83a56cd55c7 https://www.encodeproject.org/files/ENCFF000WNZ/@@download/ENCFF000WNZ.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WOA fastq reads ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 748454276 Michael Snyder, Stanford 66ac00b2901f33e2ae1aaef7b82c3170 https://www.encodeproject.org/files/ENCFF000WOA/@@download/ENCFF000WOA.fastq.gz Illumina Genome Analyzer /files/ENCFF000WNQ/ released biological replicates with identical biosample insufficient read length ENCFF000WOD fastq reads ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 4 1 28 single-ended 553421607 Michael Snyder, Stanford 04d8f4c8ea33f92a0e704baf8163c1c7 https://www.encodeproject.org/files/ENCFF000WOD/@@download/ENCFF000WOD.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VGH bed narrowPeak peaks ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 277737 Michael Snyder, Stanford 2039e0202a25d5aa07c6053f3647f416 https://www.encodeproject.org/files/ENCFF001VGH/@@download/ENCFF001VGH.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CQJ bed narrowPeak optimal idr thresholded peaks ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 334901 ENCODE Consortium Analysis Working Group 4de97ae097a0b7753657d415a0886a00 https://www.encodeproject.org/files/ENCFF002CQJ/@@download/ENCFF002CQJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF234RTC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQJ 762073 ENCODE Consortium 5fd49059b4a28db83c1d2599deae8caa https://www.encodeproject.org/files/ENCFF234RTC/@@download/ENCFF234RTC.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000PQX bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PRJ 467234698 Richard Myers, HAIB 1e820df8f2c772ee106f40bc00310d8e https://www.encodeproject.org/files/ENCFF000PQX/@@download/ENCFF000PQX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000PQY bigBed broadPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHU 358070 Richard Myers, HAIB 185b31f1ac121ef85cfc391d8b8fae79 https://www.encodeproject.org/files/ENCFF000PQY/@@download/ENCFF000PQY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000PQZ bigBed broadPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHV 86733 Richard Myers, HAIB 63b0bd6b0a71f50c56556c484af156a7 https://www.encodeproject.org/files/ENCFF000PQZ/@@download/ENCFF000PQZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000PRA bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PRL 1139296083 Richard Myers, HAIB b602808eeb55cc677c5b1f2ce42fee4c https://www.encodeproject.org/files/ENCFF000PRA/@@download/ENCFF000PRA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000PRC bigWig raw signal ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 22985707 Richard Myers, HAIB 8dde100dfe5e221b3c149f92df04d666 https://www.encodeproject.org/files/ENCFF000PRC/@@download/ENCFF000PRC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF000PRE bigWig raw signal ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 11191726 Richard Myers, HAIB 31ec7bea63894895ed2d13beb321127f https://www.encodeproject.org/files/ENCFF000PRE/@@download/ENCFF000PRE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF000PRJ fastq reads ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1025829912 Richard Myers, HAIB 8d5bd2915d916e127e9ce1e0f79cbfd2 https://www.encodeproject.org/files/ENCFF000PRJ/@@download/ENCFF000PRJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000PRL fastq reads ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1310304518 Richard Myers, HAIB dd94888936254731d407b0a52530b86c https://www.encodeproject.org/files/ENCFF000PRL/@@download/ENCFF000PRL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF001UHU bed broadPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 186875 Richard Myers, HAIB 3a9740fdeed604fe690de8e24e113015 https://www.encodeproject.org/files/ENCFF001UHU/@@download/ENCFF001UHU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF001UHV bed broadPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 18397 Richard Myers, HAIB 5f189d0574b39501046e73fefc81c658 https://www.encodeproject.org/files/ENCFF001UHV/@@download/ENCFF001UHV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF002CLF bed narrowPeak optimal idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 52120 ENCODE Consortium Analysis Working Group cf726c8c2b2cdf3ccdfcb4232d5f3431 https://www.encodeproject.org/files/ENCFF002CLF/@@download/ENCFF002CLF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF126UPS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLF 177409 ENCODE Consortium 9ad71c527f1dd3984471dfec2f03c581 https://www.encodeproject.org/files/ENCFF126UPS/@@download/ENCFF126UPS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF167ZAW bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRJ, ENCFF643CGH 507564616 ENCODE Processing Pipeline c06f8ab3d520166b50e0fb60905dfecc https://www.encodeproject.org/files/ENCFF167ZAW/@@download/ENCFF167ZAW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF424JUA bam unfiltered alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRJ, ENCFF643CGH 1269520060 ENCODE Processing Pipeline e5ce7bfed3884601e7598dc2eda2beeb https://www.encodeproject.org/files/ENCFF424JUA/@@download/ENCFF424JUA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF382ZGT bam unfiltered alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRL, ENCFF643CGH 1776076359 ENCODE Processing Pipeline 72e83ba6ca003daaad891edebc376a61 https://www.encodeproject.org/files/ENCFF382ZGT/@@download/ENCFF382ZGT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF948DOF bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRL, ENCFF643CGH 1076708084 ENCODE Processing Pipeline 2162c858f2bdbe6d452ff3368bb5eae2 https://www.encodeproject.org/files/ENCFF948DOF/@@download/ENCFF948DOF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF200BEZ bam unfiltered alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRJ, ENCFF807MUK 1265995713 ENCODE Processing Pipeline 6876cfd1a08e678194d1a38fdc84e954 https://www.encodeproject.org/files/ENCFF200BEZ/@@download/ENCFF200BEZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF455VKD bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRJ, ENCFF807MUK 507868592 ENCODE Processing Pipeline e2223999b5e531a4be148630f2b74e6c https://www.encodeproject.org/files/ENCFF455VKD/@@download/ENCFF455VKD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF110OVH bam unfiltered alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRL, ENCFF807MUK 1770876161 ENCODE Processing Pipeline dcd88975103e8936fe869d6533ed9e0e https://www.encodeproject.org/files/ENCFF110OVH/@@download/ENCFF110OVH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF353IXR bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRL, ENCFF807MUK 1076633212 ENCODE Processing Pipeline d2a72b4d0b1594b88fc5a24875d7f6ee https://www.encodeproject.org/files/ENCFF353IXR/@@download/ENCFF353IXR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF924TXL bigWig signal p-value ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF167ZAW, ENCFF193YIO, ENCFF943DZB 576985800 ENCODE Processing Pipeline e4cafb8db0e1676f7d4f0307f9269621 https://www.encodeproject.org/files/ENCFF924TXL/@@download/ENCFF924TXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF044UZR bigWig signal p-value ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF943DZB, ENCFF948DOF 626305786 ENCODE Processing Pipeline fbb5d02305aa28f63e83cd5a9a3c371c https://www.encodeproject.org/files/ENCFF044UZR/@@download/ENCFF044UZR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF268MXY bigWig signal p-value ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF167ZAW, ENCFF193YIO, ENCFF943DZB, ENCFF948DOF 785736198 ENCODE Processing Pipeline 44fe927e0cb6f624ad50745c75972b03 https://www.encodeproject.org/files/ENCFF268MXY/@@download/ENCFF268MXY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF628KKM bigWig fold change over control ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF167ZAW, ENCFF193YIO, ENCFF943DZB 301474702 ENCODE Processing Pipeline 3c4cc0049d1b519df752e68f0d10fee9 https://www.encodeproject.org/files/ENCFF628KKM/@@download/ENCFF628KKM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF406LCO bigWig fold change over control ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF943DZB, ENCFF948DOF 546447311 ENCODE Processing Pipeline cd927bf32d619e3dd99adf7e9cd35213 https://www.encodeproject.org/files/ENCFF406LCO/@@download/ENCFF406LCO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF883ERP bigWig fold change over control ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF167ZAW, ENCFF193YIO, ENCFF943DZB, ENCFF948DOF 719529840 ENCODE Processing Pipeline c3cec4f73638b6fde5edaa28d20828c3 https://www.encodeproject.org/files/ENCFF883ERP/@@download/ENCFF883ERP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF378FHV bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF943DZB, ENCFF948DOF 5488133 ENCODE Processing Pipeline 2072cffd0db8cc0d4df040b46e7df610 https://www.encodeproject.org/files/ENCFF378FHV/@@download/ENCFF378FHV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF645JFE bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF167ZAW, ENCFF193YIO, ENCFF943DZB, ENCFF948DOF 5992159 ENCODE Processing Pipeline 7d9dfd35c0916f8333d6c20993087671 https://www.encodeproject.org/files/ENCFF645JFE/@@download/ENCFF645JFE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF730DJF bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF167ZAW, ENCFF193YIO, ENCFF943DZB 4311896 ENCODE Processing Pipeline a98e14f8d36aa6926fd093b4897db6f5 https://www.encodeproject.org/files/ENCFF730DJF/@@download/ENCFF730DJF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF405EWG bigBed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF645JFE 11409470 ENCODE Processing Pipeline 4ae2b50debf071c086f820417a2cee95 https://www.encodeproject.org/files/ENCFF405EWG/@@download/ENCFF405EWG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF802XJS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF666HKG 56489 ENCODE Processing Pipeline 3d4cca6e33113154bae53ff7e4a15b73 https://www.encodeproject.org/files/ENCFF802XJS/@@download/ENCFF802XJS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF247RLG bigBed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF730DJF 10507141 ENCODE Processing Pipeline b154b48a27bbf6c6a51c26a2dc9d1c7e https://www.encodeproject.org/files/ENCFF247RLG/@@download/ENCFF247RLG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF299JYV bed narrowPeak optimal idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF378FHV, ENCFF419RSJ, ENCFF645JFE, ENCFF730DJF 82741 ENCODE Processing Pipeline b7bb2469a60f4b8cdd671d788fa78216 https://www.encodeproject.org/files/ENCFF299JYV/@@download/ENCFF299JYV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF133HHH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299JYV 181454 ENCODE Processing Pipeline 64b21aab34efd88e8b5194f4d2e1be76 https://www.encodeproject.org/files/ENCFF133HHH/@@download/ENCFF133HHH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF734AVB bigBed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF378FHV 11313252 ENCODE Processing Pipeline 189d707cb0e4ec16b0864607353ff909 https://www.encodeproject.org/files/ENCFF734AVB/@@download/ENCFF734AVB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF666HKG bed narrowPeak conservative idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF378FHV, ENCFF419RSJ, ENCFF645JFE, ENCFF730DJF 7723 ENCODE Processing Pipeline 7b0b1dc65dd38f8a58a58701a8254972 https://www.encodeproject.org/files/ENCFF666HKG/@@download/ENCFF666HKG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF523PNO bigWig fold change over control ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF455VKD, ENCFF472OOV 303005621 ENCODE Processing Pipeline 5cd18044f7e5e47fe2a9182e07002108 https://www.encodeproject.org/files/ENCFF523PNO/@@download/ENCFF523PNO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF729DXN bigWig signal p-value ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF455VKD, ENCFF472OOV 532001630 ENCODE Processing Pipeline ca60f6e12320ad0001dfd044b29720cf https://www.encodeproject.org/files/ENCFF729DXN/@@download/ENCFF729DXN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF145QHV bigWig signal p-value ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF353IXR, ENCFF472OOV 618802731 ENCODE Processing Pipeline ad953096fc420406a566e7d22f839d42 https://www.encodeproject.org/files/ENCFF145QHV/@@download/ENCFF145QHV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF002JUH bigWig signal p-value ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF353IXR, ENCFF455VKD, ENCFF472OOV 731831978 ENCODE Processing Pipeline 7ffb6aab115d8658351ddffcfe28378d https://www.encodeproject.org/files/ENCFF002JUH/@@download/ENCFF002JUH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF549YBI bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF455VKD, ENCFF472OOV 4308309 ENCODE Processing Pipeline 20a9468b3b2846e2aad3ced78d6492ce https://www.encodeproject.org/files/ENCFF549YBI/@@download/ENCFF549YBI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF640IGS bigBed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF549YBI 10495477 ENCODE Processing Pipeline 4de6078a8ff1880c37db4e7bd2a9817a https://www.encodeproject.org/files/ENCFF640IGS/@@download/ENCFF640IGS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF812VPO bigWig fold change over control ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF353IXR, ENCFF472OOV 546793306 ENCODE Processing Pipeline 20ac06bb4ec1f797dd6710f76a39af15 https://www.encodeproject.org/files/ENCFF812VPO/@@download/ENCFF812VPO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF682QML bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF353IXR, ENCFF472OOV 5488677 ENCODE Processing Pipeline 717ad779934529bd287c92f81fe4c406 https://www.encodeproject.org/files/ENCFF682QML/@@download/ENCFF682QML.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF080AEE bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF353IXR, ENCFF455VKD, ENCFF472OOV 5990613 ENCODE Processing Pipeline caf6736153e955e69294dbb1081e2492 https://www.encodeproject.org/files/ENCFF080AEE/@@download/ENCFF080AEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF028QPY bigBed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080AEE 11403625 ENCODE Processing Pipeline f1bd192991e385f6f8bc35c4a369c9f3 https://www.encodeproject.org/files/ENCFF028QPY/@@download/ENCFF028QPY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF997NWM bed narrowPeak conservative idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF080AEE, ENCFF549YBI, ENCFF682QML 7725 ENCODE Processing Pipeline efbefc829ff375aba971abd347467b8c https://www.encodeproject.org/files/ENCFF997NWM/@@download/ENCFF997NWM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF473MZX bigWig fold change over control ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF353IXR, ENCFF455VKD, ENCFF472OOV 723290620 ENCODE Processing Pipeline 84c0f2a1fadcc38edaf088c84685c105 https://www.encodeproject.org/files/ENCFF473MZX/@@download/ENCFF473MZX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF940BIM bed narrowPeak optimal idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF080AEE, ENCFF549YBI, ENCFF682QML 82467 ENCODE Processing Pipeline ef10ea189b4f938947aaadfa6b6f4e84 https://www.encodeproject.org/files/ENCFF940BIM/@@download/ENCFF940BIM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF357RQO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF940BIM 180468 ENCODE Processing Pipeline 1eb8a7c93622df99ca84be8ef66ba38c https://www.encodeproject.org/files/ENCFF357RQO/@@download/ENCFF357RQO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF566YPN bigBed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF682QML 11306375 ENCODE Processing Pipeline edc07f97df4355dc794db43149bbc215 https://www.encodeproject.org/files/ENCFF566YPN/@@download/ENCFF566YPN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF904IDJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF997NWM 56585 ENCODE Processing Pipeline 4f78d6b89fdc8905d56d0ce162a40be0 https://www.encodeproject.org/files/ENCFF904IDJ/@@download/ENCFF904IDJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF095DPD fastq reads ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1174770776 Richard Myers, HAIB b86ff114ffba2af94130fed4be2001b2 SRA:SRR5338831 https://www.encodeproject.org/files/ENCFF095DPD/@@download/ENCFF095DPD.fastq.gz Illumina HiSeq 2000 /files/ENCFF913JVQ/ released low read depth, antibody characterized with exemption ENCFF985HSY bigWig fold change over control ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF444TNY, ENCFF847YDJ, ENCFF875XTU 671051065 ENCODE Processing Pipeline 5f3c6843ad3f9525db02dbc1543e570c https://www.encodeproject.org/files/ENCFF985HSY/@@download/ENCFF985HSY.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF032FAC bigWig signal p-value ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF444TNY, ENCFF847YDJ, ENCFF875XTU 923187077 ENCODE Processing Pipeline 88dee013c43934bee4ed7e0580189c06 https://www.encodeproject.org/files/ENCFF032FAC/@@download/ENCFF032FAC.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF087LWV fastq reads ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1389436775 Richard Myers, HAIB 5e77e780e28000cab748682eb0e91ac7 SRA:SRR5338832 https://www.encodeproject.org/files/ENCFF087LWV/@@download/ENCFF087LWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF993VKM/ released low read depth, antibody characterized with exemption ENCFF301SVO bam unfiltered alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF095DPD, ENCFF807MUK 1274064679 ENCODE Processing Pipeline cffd6322eb1e1ecb2a2983c2548910c1 https://www.encodeproject.org/files/ENCFF301SVO/@@download/ENCFF301SVO.bam hg19 released low read depth, antibody characterized with exemption ENCFF552FVW bam unfiltered alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF087LWV, ENCFF807MUK 1566184110 ENCODE Processing Pipeline 7decc94c712689a5ec8c7d9327deedbb https://www.encodeproject.org/files/ENCFF552FVW/@@download/ENCFF552FVW.bam hg19 released low read depth, antibody characterized with exemption ENCFF989NDR bam unfiltered alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF095DPD, ENCFF643CGH 1278346389 ENCODE Processing Pipeline 9040035b91ace8aced628f2d0aba644d https://www.encodeproject.org/files/ENCFF989NDR/@@download/ENCFF989NDR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF320BMV bam unfiltered alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF087LWV, ENCFF643CGH 1572724611 ENCODE Processing Pipeline 3b4f1c0c19bc2dcd1c22bd0855b6d925 https://www.encodeproject.org/files/ENCFF320BMV/@@download/ENCFF320BMV.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF875XTU bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF095DPD, ENCFF807MUK 944850440 ENCODE Processing Pipeline 63cf815bf509ea91b361efb619ca8d07 https://www.encodeproject.org/files/ENCFF875XTU/@@download/ENCFF875XTU.bam hg19 released low read depth, antibody characterized with exemption ENCFF584YAE bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF087LWV, ENCFF807MUK 1198640942 ENCODE Processing Pipeline 6fb515641c762da6db4a4031f8135307 https://www.encodeproject.org/files/ENCFF584YAE/@@download/ENCFF584YAE.bam hg19 released low read depth, antibody characterized with exemption ENCFF056XVW bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF095DPD, ENCFF643CGH 944413952 ENCODE Processing Pipeline e8e474b3e5144239c8a2669d2b083269 https://www.encodeproject.org/files/ENCFF056XVW/@@download/ENCFF056XVW.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF540SXT bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF087LWV, ENCFF643CGH 1198353720 ENCODE Processing Pipeline aa3a1b13fc69355779aaf4d83bc1d5f6 https://www.encodeproject.org/files/ENCFF540SXT/@@download/ENCFF540SXT.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF678YIU bigWig signal p-value ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF056XVW, ENCFF092PMQ, ENCFF162ZOO 922455886 ENCODE Processing Pipeline 9e3284a35783023d66947ab42568c801 https://www.encodeproject.org/files/ENCFF678YIU/@@download/ENCFF678YIU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF324TWT bigWig signal p-value ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF540SXT 941162646 ENCODE Processing Pipeline 4da43bf408382c8d6b9e7a7da3cb3f6c https://www.encodeproject.org/files/ENCFF324TWT/@@download/ENCFF324TWT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF526TGH bigWig signal p-value ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF056XVW, ENCFF092PMQ, ENCFF162ZOO, ENCFF540SXT 1083035089 ENCODE Processing Pipeline 365316e0c56fb9f2019a091041d6b4cf https://www.encodeproject.org/files/ENCFF526TGH/@@download/ENCFF526TGH.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF523UOR bigWig fold change over control ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF056XVW, ENCFF092PMQ, ENCFF162ZOO 669548724 ENCODE Processing Pipeline 4e041c0473cd5a577fcdf092f685d341 https://www.encodeproject.org/files/ENCFF523UOR/@@download/ENCFF523UOR.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF385HPQ bigWig fold change over control ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF540SXT 816696554 ENCODE Processing Pipeline 649a57edc78040c1baf8c1caeb83f811 https://www.encodeproject.org/files/ENCFF385HPQ/@@download/ENCFF385HPQ.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF766RAU bigWig fold change over control ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF056XVW, ENCFF092PMQ, ENCFF162ZOO, ENCFF540SXT 1115202243 ENCODE Processing Pipeline d4a0a10d497b4275c7b9728b8e1242fc https://www.encodeproject.org/files/ENCFF766RAU/@@download/ENCFF766RAU.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF290BUP bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF056XVW, ENCFF092PMQ, ENCFF162ZOO 5862231 ENCODE Processing Pipeline a1851aec8d208649a3b9f1729ac5be39 https://www.encodeproject.org/files/ENCFF290BUP/@@download/ENCFF290BUP.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF359CNE bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF092PMQ, ENCFF162ZOO, ENCFF540SXT 6153223 ENCODE Processing Pipeline d64d8d256acff1ce3d67ffd20f4997e8 https://www.encodeproject.org/files/ENCFF359CNE/@@download/ENCFF359CNE.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF491MFV bigBed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF359CNE 13434710 ENCODE Processing Pipeline d49ec20a498bd12e6bb43eeb033168e6 https://www.encodeproject.org/files/ENCFF491MFV/@@download/ENCFF491MFV.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF057EGU bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF056XVW, ENCFF092PMQ, ENCFF162ZOO, ENCFF540SXT 6545134 ENCODE Processing Pipeline 13d8b796d014fd1a1aafa5b03e5c2569 https://www.encodeproject.org/files/ENCFF057EGU/@@download/ENCFF057EGU.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF066WUL bigBed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF290BUP 13360617 ENCODE Processing Pipeline 072b1575e54c5e30ab4887702d239121 https://www.encodeproject.org/files/ENCFF066WUL/@@download/ENCFF066WUL.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF616NNR bigBed narrowPeak conservative idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF389KBV 184985 ENCODE Processing Pipeline 352d83f9de8d0d563e90b05c9b7eafed https://www.encodeproject.org/files/ENCFF616NNR/@@download/ENCFF616NNR.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF158AZQ bigBed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF057EGU 13278708 ENCODE Processing Pipeline da08f638085b4a4a42039de3a0b6031e https://www.encodeproject.org/files/ENCFF158AZQ/@@download/ENCFF158AZQ.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF389KBV bed narrowPeak conservative idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF057EGU, ENCFF290BUP, ENCFF359CNE, ENCFF419RSJ 61908 ENCODE Processing Pipeline 6053ff17ee44221ef85259f47a011a74 https://www.encodeproject.org/files/ENCFF389KBV/@@download/ENCFF389KBV.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF532HCE bed narrowPeak optimal idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF057EGU, ENCFF290BUP, ENCFF359CNE, ENCFF419RSJ 65861 ENCODE Processing Pipeline 024805d8bbc803eb8d4a9e158fa30823 https://www.encodeproject.org/files/ENCFF532HCE/@@download/ENCFF532HCE.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF669AVV bigBed narrowPeak optimal idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF532HCE 190856 ENCODE Processing Pipeline de882740250df3432f7df96c78875501 https://www.encodeproject.org/files/ENCFF669AVV/@@download/ENCFF669AVV.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF445UPX bigWig fold change over control ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ 818083728 ENCODE Processing Pipeline 853a12834971be03d4e1be8968dc9e3e https://www.encodeproject.org/files/ENCFF445UPX/@@download/ENCFF445UPX.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF875YIA bigWig signal p-value ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ 965880962 ENCODE Processing Pipeline 985e2b8f618ee6ca4f4d4ba1fead752e https://www.encodeproject.org/files/ENCFF875YIA/@@download/ENCFF875YIA.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF278NVP bigWig signal p-value ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ, ENCFF875XTU 1206251560 ENCODE Processing Pipeline e95e3ab96070ce10421e30d4ed7b5ed8 https://www.encodeproject.org/files/ENCFF278NVP/@@download/ENCFF278NVP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF187GTP bigWig fold change over control ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ, ENCFF875XTU 1113200102 ENCODE Processing Pipeline 4a5f154e7ba674d952b17d67fd5758ae https://www.encodeproject.org/files/ENCFF187GTP/@@download/ENCFF187GTP.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF774DGH bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF444TNY, ENCFF847YDJ, ENCFF875XTU 5923453 ENCODE Processing Pipeline 1c68465e3c10cf7ca801edb567c6a1c8 https://www.encodeproject.org/files/ENCFF774DGH/@@download/ENCFF774DGH.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF659XXQ bigBed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF433RNR 13413949 ENCODE Processing Pipeline 85e6d67edcc72fc98ffd641e0795d193 https://www.encodeproject.org/files/ENCFF659XXQ/@@download/ENCFF659XXQ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF433RNR bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ 6188871 ENCODE Processing Pipeline 4f349162fa27939dac8a7fc617b685f9 https://www.encodeproject.org/files/ENCFF433RNR/@@download/ENCFF433RNR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF671XXI bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ, ENCFF875XTU 6588901 ENCODE Processing Pipeline 0b32b352d9146441b84ad9468d59806b https://www.encodeproject.org/files/ENCFF671XXI/@@download/ENCFF671XXI.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF633OQQ bed narrowPeak conservative idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF433RNR, ENCFF671XXI, ENCFF774DGH 60284 ENCODE Processing Pipeline 04088c209c696a78154ec3e0025ffc50 https://www.encodeproject.org/files/ENCFF633OQQ/@@download/ENCFF633OQQ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF862ZWG bigBed narrowPeak conservative idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF633OQQ 180625 ENCODE Processing Pipeline 9e883d2550b9596219c8eed4129d278a https://www.encodeproject.org/files/ENCFF862ZWG/@@download/ENCFF862ZWG.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF786WZD bed narrowPeak optimal idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF433RNR, ENCFF671XXI, ENCFF774DGH 64933 ENCODE Processing Pipeline 35a9ccfb765df1b979ffba0e21e27919 https://www.encodeproject.org/files/ENCFF786WZD/@@download/ENCFF786WZD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF721WXC bigBed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF774DGH 13340249 ENCODE Processing Pipeline 484b17aae25a943f56c3014296892366 https://www.encodeproject.org/files/ENCFF721WXC/@@download/ENCFF721WXC.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF591JAC bigBed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF671XXI 13250668 ENCODE Processing Pipeline 901c5e47522d4b08b508b9572bf194f7 https://www.encodeproject.org/files/ENCFF591JAC/@@download/ENCFF591JAC.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF247KGV bigBed narrowPeak optimal idr thresholded peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF786WZD 188381 ENCODE Processing Pipeline c29196eb8f01fb0844c69bb876531356 https://www.encodeproject.org/files/ENCFF247KGV/@@download/ENCFF247KGV.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF000YOX fastq reads ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 292423397 Sherman Weissman, Yale 2852f2a7c5fb787291aaf4e3f1fc4e63 https://www.encodeproject.org/files/ENCFF000YOX/@@download/ENCFF000YOX.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YOZ fastq reads ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 515281314 Sherman Weissman, Yale 3c8deec46ced851837cc7e29762a2122 https://www.encodeproject.org/files/ENCFF000YOZ/@@download/ENCFF000YOZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAI bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOX 382077060 Sherman Weissman, Yale 8d639a12a92c3bb17f5c10b5b29f2d46 https://www.encodeproject.org/files/ENCFF000ZAI/@@download/ENCFF000ZAI.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAJ bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOZ 707081771 Sherman Weissman, Yale e26eb575f95e737004d1f6f408212fb9 https://www.encodeproject.org/files/ENCFF000ZAJ/@@download/ENCFF000ZAJ.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAK bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOX 95895 Sherman Weissman, Yale 61c9c1664d1a6b718a96cffb46a86456 https://www.encodeproject.org/files/ENCFF000ZAK/@@download/ENCFF000ZAK.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAL bigWig signal ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 350088040 Sherman Weissman, Yale fc85e0b19cf26940028ebcef53790428 https://www.encodeproject.org/files/ENCFF000ZAL/@@download/ENCFF000ZAL.bigWig hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF001VOX bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 11234 Sherman Weissman, Yale 0e0b41674a2ac38f2a4ddab39d1a3845 https://www.encodeproject.org/files/ENCFF001VOX/@@download/ENCFF001VOX.bed.gz hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CYF bed narrowPeak optimal idr thresholded peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 77558 ENCODE Consortium Analysis Working Group f93fb9e05c31ec08feb48472ef6fddc6 https://www.encodeproject.org/files/ENCFF002CYF/@@download/ENCFF002CYF.bed.gz hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF153AEC bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYF 227372 ENCODE Consortium f4651670b76d5e753a09e40e4b977ccf https://www.encodeproject.org/files/ENCFF153AEC/@@download/ENCFF153AEC.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF615CWW bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOX, ENCFF643CGH 227693827 ENCODE Processing Pipeline fe3edd370506bb8060935638d2472ab7 https://www.encodeproject.org/files/ENCFF615CWW/@@download/ENCFF615CWW.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF469PLV bam unfiltered alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOX, ENCFF643CGH 383586980 ENCODE Processing Pipeline 3c10359deda073f7716b211e35d6c842 https://www.encodeproject.org/files/ENCFF469PLV/@@download/ENCFF469PLV.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF259ISF bam unfiltered alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOX, ENCFF807MUK 382634296 ENCODE Processing Pipeline 1206a140b7e9d0b51c68da4ead3a9f41 https://www.encodeproject.org/files/ENCFF259ISF/@@download/ENCFF259ISF.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF936IVO bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOX, ENCFF807MUK 227983430 ENCODE Processing Pipeline e99a9b1672584bbc0b01ff63244853ed https://www.encodeproject.org/files/ENCFF936IVO/@@download/ENCFF936IVO.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF752LNO bam unfiltered alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOZ, ENCFF807MUK 707972775 ENCODE Processing Pipeline 81d39e16a50fe7c908a8c532971bd91a https://www.encodeproject.org/files/ENCFF752LNO/@@download/ENCFF752LNO.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF811LRS bam unfiltered alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOZ, ENCFF643CGH 709980726 ENCODE Processing Pipeline 634323f040179d438da25b4c8832d226 https://www.encodeproject.org/files/ENCFF811LRS/@@download/ENCFF811LRS.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF972AYH bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOZ, ENCFF807MUK 340325442 ENCODE Processing Pipeline 2f727d7f01af337ea49666821fec34ad https://www.encodeproject.org/files/ENCFF972AYH/@@download/ENCFF972AYH.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF940QAP bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOZ, ENCFF643CGH 339891114 ENCODE Processing Pipeline dce2c9e1d9d7dfbc2889cdfdefd0bfd1 https://www.encodeproject.org/files/ENCFF940QAP/@@download/ENCFF940QAP.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF016IMY bigWig signal p-value ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF767FSP, ENCFF940QAP 236701408 ENCODE Processing Pipeline c05710bad6f53d4feb11eafa85f95958 https://www.encodeproject.org/files/ENCFF016IMY/@@download/ENCFF016IMY.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF142KKU bigWig signal p-value ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF936IVO, ENCFF972AYH 293554447 ENCODE Processing Pipeline 4abdd051ca74d99d9f9f05f92d0d6ef5 https://www.encodeproject.org/files/ENCFF142KKU/@@download/ENCFF142KKU.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF429ZYF bigWig signal p-value ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF936IVO 271730933 ENCODE Processing Pipeline 5652eaf40d8f4c0fb7bcceded720872e https://www.encodeproject.org/files/ENCFF429ZYF/@@download/ENCFF429ZYF.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF343UTK bigWig signal p-value ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF615CWW, ENCFF767FSP 228640201 ENCODE Processing Pipeline 30c61e12348a78ab04d26a536ed4377d https://www.encodeproject.org/files/ENCFF343UTK/@@download/ENCFF343UTK.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF454WCR bigWig signal p-value ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF972AYH 236920982 ENCODE Processing Pipeline 057c49b416bd9d95a0080489ddec976e https://www.encodeproject.org/files/ENCFF454WCR/@@download/ENCFF454WCR.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF237CKP bigWig signal p-value ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF615CWW, ENCFF767FSP, ENCFF940QAP 309335084 ENCODE Processing Pipeline 9de0f2a96587a1479d84da51c6c5ba14 https://www.encodeproject.org/files/ENCFF237CKP/@@download/ENCFF237CKP.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF770ESE bigWig fold change over control ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF615CWW, ENCFF767FSP 112940675 ENCODE Processing Pipeline c7283deff0dc2ae3b920fa96fce3ca51 https://www.encodeproject.org/files/ENCFF770ESE/@@download/ENCFF770ESE.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF432QFF bigWig fold change over control ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF767FSP, ENCFF940QAP 159907162 ENCODE Processing Pipeline e8088ee49308091247ce6108f0826f3d https://www.encodeproject.org/files/ENCFF432QFF/@@download/ENCFF432QFF.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF998JTX bigWig fold change over control ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF615CWW, ENCFF767FSP, ENCFF940QAP 251806966 ENCODE Processing Pipeline b87fd241c48359cb84d3c6df821692ea https://www.encodeproject.org/files/ENCFF998JTX/@@download/ENCFF998JTX.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF602GFA bigWig fold change over control ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF972AYH 160213017 ENCODE Processing Pipeline aa833b50b6401128fe3e24b730ac0d25 https://www.encodeproject.org/files/ENCFF602GFA/@@download/ENCFF602GFA.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF133YDB bigWig fold change over control ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF936IVO, ENCFF972AYH 251288011 ENCODE Processing Pipeline 4f89e526884c47590c7c12e3b9f29cd5 https://www.encodeproject.org/files/ENCFF133YDB/@@download/ENCFF133YDB.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF395EZO bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF936IVO 2031796 ENCODE Processing Pipeline 044c3443fb18e648aac8a508ae8bf281 https://www.encodeproject.org/files/ENCFF395EZO/@@download/ENCFF395EZO.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF017VWM bigWig fold change over control ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF936IVO 115604525 ENCODE Processing Pipeline f15eac1e7d13d7f3bbb753f813534d36 https://www.encodeproject.org/files/ENCFF017VWM/@@download/ENCFF017VWM.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF109BMB bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF615CWW, ENCFF767FSP 2026243 ENCODE Processing Pipeline 354aa2a24bf2870ab9e72ce8652019f2 https://www.encodeproject.org/files/ENCFF109BMB/@@download/ENCFF109BMB.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF685JSX bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF615CWW, ENCFF767FSP, ENCFF940QAP 4460626 ENCODE Processing Pipeline f844a058057a200a29efd1ff7e223242 https://www.encodeproject.org/files/ENCFF685JSX/@@download/ENCFF685JSX.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF419VTB bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF109BMB 4077536 ENCODE Processing Pipeline 4fe98f9b57b857664a35e0b611eb2508 https://www.encodeproject.org/files/ENCFF419VTB/@@download/ENCFF419VTB.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF255TXX bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF608HRC 7553449 ENCODE Processing Pipeline b38d02bf98ecef7256a85a0b0be96b8d https://www.encodeproject.org/files/ENCFF255TXX/@@download/ENCFF255TXX.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF608HRC bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF767FSP, ENCFF940QAP 2972550 ENCODE Processing Pipeline d9bb3f32a30df8c6c0c1094477d3345e https://www.encodeproject.org/files/ENCFF608HRC/@@download/ENCFF608HRC.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF926XFR bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF972AYH 2979768 ENCODE Processing Pipeline fa285962e1b274aac8605f7db6eeabb4 https://www.encodeproject.org/files/ENCFF926XFR/@@download/ENCFF926XFR.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF054VTQ bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF936IVO, ENCFF972AYH 4433602 ENCODE Processing Pipeline 04b7f3a31a6f8ac0178fa69a9d71f62c https://www.encodeproject.org/files/ENCFF054VTQ/@@download/ENCFF054VTQ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF117KTY bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF395EZO 4081414 ENCODE Processing Pipeline 35ee9fd8a81a4cbfc8e6adbecf06cde9 https://www.encodeproject.org/files/ENCFF117KTY/@@download/ENCFF117KTY.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF335HBC bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF054VTQ 10396687 ENCODE Processing Pipeline 36d3559f16db19f35bcb80372733138b https://www.encodeproject.org/files/ENCFF335HBC/@@download/ENCFF335HBC.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF113RPF bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF685JSX 10441425 ENCODE Processing Pipeline 5f0fd047de70f12190421897c1a55604 https://www.encodeproject.org/files/ENCFF113RPF/@@download/ENCFF113RPF.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF411TAZ bigBed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF926XFR 7565933 ENCODE Processing Pipeline 53533715232556ee93bbab7cfa37803a https://www.encodeproject.org/files/ENCFF411TAZ/@@download/ENCFF411TAZ.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF459GKA bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF204VQS 158487 ENCODE Processing Pipeline 8ee133c2c48419f3a90785fedf328f69 https://www.encodeproject.org/files/ENCFF459GKA/@@download/ENCFF459GKA.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF315IKT bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF714VIT 159041 ENCODE Processing Pipeline 88f5a738856ea3a3dcdc97aa77221a8f https://www.encodeproject.org/files/ENCFF315IKT/@@download/ENCFF315IKT.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF204VQS bed narrowPeak optimal idr thresholded peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF109BMB, ENCFF419RSJ, ENCFF608HRC, ENCFF685JSX 66160 ENCODE Processing Pipeline 5496fa50897dda446d76e8e279d6aa60 https://www.encodeproject.org/files/ENCFF204VQS/@@download/ENCFF204VQS.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF714VIT bed narrowPeak optimal idr thresholded peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF054VTQ, ENCFF395EZO, ENCFF926XFR 66698 ENCODE Processing Pipeline 6941bc52652563547e46896535a4debe https://www.encodeproject.org/files/ENCFF714VIT/@@download/ENCFF714VIT.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF005XAH bam unfiltered alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 100 ENCFF264CHQ, ENCFF807MUK, ENCFF880UNP 7114336514 ENCODE Processing Pipeline f1ef76d65deb5480c030efcfcdb88b3a https://www.encodeproject.org/files/ENCFF005XAH/@@download/ENCFF005XAH.bam hg19 released ENCFF137RKF bam unfiltered alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 100 ENCFF082KHS, ENCFF118URY, ENCFF807MUK 6499825882 ENCODE Processing Pipeline fe5b2aa7995b74f51bf731f665a341a2 https://www.encodeproject.org/files/ENCFF137RKF/@@download/ENCFF137RKF.bam hg19 released ENCFF264CHQ fastq reads ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 1 100 paired-ended 2 ENCFF880UNP 3324062043 Michael Snyder, Stanford 1edb47c5c5d27ab6274c4d6e1b820281 SRA:SRR6213651 https://www.encodeproject.org/files/ENCFF264CHQ/@@download/ENCFF264CHQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF118URY fastq reads ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 1 100 paired-ended 1 ENCFF082KHS 2974667236 Michael Snyder, Stanford a896740629f70c16a3f61f3132c78a0f SRA:SRR6213652 https://www.encodeproject.org/files/ENCFF118URY/@@download/ENCFF118URY.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF082KHS fastq reads ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 1 100 paired-ended 2 ENCFF118URY 3036554916 Michael Snyder, Stanford 03d859a15078976ef843d499d8e9b874 SRA:SRR6213652 https://www.encodeproject.org/files/ENCFF082KHS/@@download/ENCFF082KHS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF880UNP fastq reads ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 1 100 paired-ended 1 ENCFF264CHQ 3258595373 Michael Snyder, Stanford d73336e473cddc87d7485cffb4ab3005 SRA:SRR6213651 https://www.encodeproject.org/files/ENCFF880UNP/@@download/ENCFF880UNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF430WVD bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 100 ENCFF264CHQ, ENCFF807MUK, ENCFF880UNP 5425510416 ENCODE Processing Pipeline 4502420105934849598fa3ff22fd1cac https://www.encodeproject.org/files/ENCFF430WVD/@@download/ENCFF430WVD.bam hg19 released ENCFF544MAP bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 100 ENCFF082KHS, ENCFF118URY, ENCFF807MUK 4889208053 ENCODE Processing Pipeline 01a244d31b828f3d10188e2018ec397e https://www.encodeproject.org/files/ENCFF544MAP/@@download/ENCFF544MAP.bam hg19 released ENCFF029UDB bigWig signal p-value ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF430WVD, ENCFF581ZJL 1334012419 ENCODE Processing Pipeline 5180a28449940312761cd72632883151 https://www.encodeproject.org/files/ENCFF029UDB/@@download/ENCFF029UDB.bigWig hg19 released ENCFF197SIU bigWig signal p-value ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF544MAP 1120568755 ENCODE Processing Pipeline 21bec94a209aafd291d306a63fca2c8f https://www.encodeproject.org/files/ENCFF197SIU/@@download/ENCFF197SIU.bigWig hg19 released ENCFF963ROF bigWig signal p-value ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF430WVD, ENCFF544MAP, ENCFF581ZJL 2069574960 ENCODE Processing Pipeline e530ef6b913f6714f109990b9013ab37 https://www.encodeproject.org/files/ENCFF963ROF/@@download/ENCFF963ROF.bigWig hg19 released ENCFF023RUI bigWig fold change over control ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF430WVD, ENCFF581ZJL 1301405254 ENCODE Processing Pipeline be2a41854d85fb984fc26cb6ff60d9b0 https://www.encodeproject.org/files/ENCFF023RUI/@@download/ENCFF023RUI.bigWig hg19 released ENCFF527TZQ bigWig fold change over control ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF544MAP 1208100338 ENCODE Processing Pipeline 9264a065ed3fd794dfb873dfdef35c12 https://www.encodeproject.org/files/ENCFF527TZQ/@@download/ENCFF527TZQ.bigWig hg19 released ENCFF452SVJ bigWig fold change over control ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF430WVD, ENCFF544MAP, ENCFF581ZJL 2200209081 ENCODE Processing Pipeline ba8ba845829967d3669a0dfa82dc9bc0 https://www.encodeproject.org/files/ENCFF452SVJ/@@download/ENCFF452SVJ.bigWig hg19 released ENCFF121MTK bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF430WVD, ENCFF581ZJL 6704094 ENCODE Processing Pipeline 20566f46bdabc2b040fa2bb4ccdc8a32 https://www.encodeproject.org/files/ENCFF121MTK/@@download/ENCFF121MTK.bed.gz hg19 released ENCFF580OVF bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF544MAP 6894292 ENCODE Processing Pipeline 552f2bab6068ab3d0513b6720c1669de https://www.encodeproject.org/files/ENCFF580OVF/@@download/ENCFF580OVF.bed.gz hg19 released ENCFF722GTZ bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF430WVD, ENCFF544MAP, ENCFF581ZJL 7262910 ENCODE Processing Pipeline 80de46980f3e670effa4b260d025e0e8 https://www.encodeproject.org/files/ENCFF722GTZ/@@download/ENCFF722GTZ.bed.gz hg19 released ENCFF769ISQ bigBed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF121MTK 11183264 ENCODE Processing Pipeline e94da769c066729e1a788b0bc873e17f https://www.encodeproject.org/files/ENCFF769ISQ/@@download/ENCFF769ISQ.bigBed hg19 released ENCFF296TKA bigBed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF580OVF 13258126 ENCODE Processing Pipeline 70e7b0cb4d475fa73e686c754a5fe204 https://www.encodeproject.org/files/ENCFF296TKA/@@download/ENCFF296TKA.bigBed hg19 released ENCFF181MLR bigBed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF722GTZ 13207770 ENCODE Processing Pipeline 3ffe68c7961e9575559f935f34c6f4b3 https://www.encodeproject.org/files/ENCFF181MLR/@@download/ENCFF181MLR.bigBed hg19 released ENCFF556YCY bed narrowPeak optimal idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF121MTK, ENCFF580OVF, ENCFF722GTZ 197431 ENCODE Processing Pipeline 3f96e4acd4c424097caf1ee9eceedf8a https://www.encodeproject.org/files/ENCFF556YCY/@@download/ENCFF556YCY.bed.gz hg19 released ENCFF951UWN bed narrowPeak conservative idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF001TDO, ENCFF121MTK, ENCFF580OVF, ENCFF722GTZ 106219 ENCODE Processing Pipeline 3ece9b16f614b0481a9b8e178780ce71 https://www.encodeproject.org/files/ENCFF951UWN/@@download/ENCFF951UWN.bed.gz hg19 released ENCFF506SJF bigBed narrowPeak conservative idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF951UWN 263925 ENCODE Processing Pipeline 5669c5556ce32014ac83ee7b131a2fde https://www.encodeproject.org/files/ENCFF506SJF/@@download/ENCFF506SJF.bigBed hg19 released ENCFF691DCT bigBed narrowPeak optimal idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF556YCY 397486 ENCODE Processing Pipeline a2e751d131c086e4fdb50d4e351d28bf https://www.encodeproject.org/files/ENCFF691DCT/@@download/ENCFF691DCT.bigBed hg19 released ENCFF078FTA bam unfiltered alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 100 ENCFF082KHS, ENCFF118URY, ENCFF643CGH 6502733564 ENCODE Processing Pipeline 87720b65ee9d4f27ef02dd20054fc340 https://www.encodeproject.org/files/ENCFF078FTA/@@download/ENCFF078FTA.bam GRCh38 released ENCFF354TFR bam unfiltered alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 100 ENCFF264CHQ, ENCFF643CGH, ENCFF880UNP 7118058157 ENCODE Processing Pipeline 9f1997ea3ecf556c28177e856b51e7cb https://www.encodeproject.org/files/ENCFF354TFR/@@download/ENCFF354TFR.bam GRCh38 released ENCFF648LXV bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 100 ENCFF082KHS, ENCFF118URY, ENCFF643CGH 4893622585 ENCODE Processing Pipeline eacb73bcd2aa6070362be2ead4f81c2d https://www.encodeproject.org/files/ENCFF648LXV/@@download/ENCFF648LXV.bam GRCh38 released ENCFF068UWU bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 100 ENCFF264CHQ, ENCFF643CGH, ENCFF880UNP 5430129177 ENCODE Processing Pipeline 9da1be1452ac42835fb940ee31ab576c https://www.encodeproject.org/files/ENCFF068UWU/@@download/ENCFF068UWU.bam GRCh38 released ENCFF720VHO bigWig signal p-value ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF068UWU, ENCFF910IKB 1237750438 ENCODE Processing Pipeline 7e1593dccee820821ab97befde9a6cdf https://www.encodeproject.org/files/ENCFF720VHO/@@download/ENCFF720VHO.bigWig GRCh38 released ENCFF355UYJ bigWig signal p-value ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF227IZS, ENCFF648LXV 1018793909 ENCODE Processing Pipeline 2815b0943609517d49f2d6bc618559de https://www.encodeproject.org/files/ENCFF355UYJ/@@download/ENCFF355UYJ.bigWig GRCh38 released ENCFF664LTQ bigWig signal p-value ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF068UWU, ENCFF227IZS, ENCFF648LXV, ENCFF910IKB 1825286243 ENCODE Processing Pipeline 399bceb87a2097f2c3839fec704bce25 https://www.encodeproject.org/files/ENCFF664LTQ/@@download/ENCFF664LTQ.bigWig GRCh38 released ENCFF109UPN bigWig fold change over control ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF068UWU, ENCFF910IKB 1307225462 ENCODE Processing Pipeline 7192727928a538436c7a3b662c2a110f https://www.encodeproject.org/files/ENCFF109UPN/@@download/ENCFF109UPN.bigWig GRCh38 released ENCFF362BCJ bigWig fold change over control ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF227IZS, ENCFF648LXV 1207565805 ENCODE Processing Pipeline 044ff95956f05e7b78f9a10e5729e446 https://www.encodeproject.org/files/ENCFF362BCJ/@@download/ENCFF362BCJ.bigWig GRCh38 released ENCFF689NUE bigWig fold change over control ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF068UWU, ENCFF227IZS, ENCFF648LXV, ENCFF910IKB 2167674803 ENCODE Processing Pipeline 8c90721822d1e5086adfb018edcc1f0b https://www.encodeproject.org/files/ENCFF689NUE/@@download/ENCFF689NUE.bigWig GRCh38 released ENCFF961VPB bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF068UWU, ENCFF910IKB 6582921 ENCODE Processing Pipeline c24d287652dc27308f2dd7ee5b300dfb https://www.encodeproject.org/files/ENCFF961VPB/@@download/ENCFF961VPB.bed.gz GRCh38 released ENCFF495UHL bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF227IZS, ENCFF648LXV 6783819 ENCODE Processing Pipeline d90f4fb65732804a5cacef94bf2ef10c https://www.encodeproject.org/files/ENCFF495UHL/@@download/ENCFF495UHL.bed.gz GRCh38 released ENCFF584NKE bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF068UWU, ENCFF227IZS, ENCFF648LXV, ENCFF910IKB 7251454 ENCODE Processing Pipeline 6fc7de8de828f189c7d40069722173d2 https://www.encodeproject.org/files/ENCFF584NKE/@@download/ENCFF584NKE.bed.gz GRCh38 released ENCFF577XCY bigBed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF961VPB 11193296 ENCODE Processing Pipeline d2998e62701b8883c0be0e7a8aea2983 https://www.encodeproject.org/files/ENCFF577XCY/@@download/ENCFF577XCY.bigBed GRCh38 released ENCFF935MFB bigBed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF495UHL 13267430 ENCODE Processing Pipeline 70d973ca0f7cf3031690a09c3ea5596d https://www.encodeproject.org/files/ENCFF935MFB/@@download/ENCFF935MFB.bigBed GRCh38 released ENCFF125LRO bigBed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF584NKE 13220067 ENCODE Processing Pipeline 7c1d587e4509e379c8afd8214949b128 https://www.encodeproject.org/files/ENCFF125LRO/@@download/ENCFF125LRO.bigBed GRCh38 released ENCFF352VEC bed narrowPeak conservative idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF495UHL, ENCFF584NKE, ENCFF961VPB 104193 ENCODE Processing Pipeline 31f979a8db200a320b260ab7f6be5f2d https://www.encodeproject.org/files/ENCFF352VEC/@@download/ENCFF352VEC.bed.gz GRCh38 released ENCFF352CBW bigBed narrowPeak conservative idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF352VEC 262451 ENCODE Processing Pipeline c92a9137fd8af83d684953f6ba85f495 https://www.encodeproject.org/files/ENCFF352CBW/@@download/ENCFF352CBW.bigBed GRCh38 released ENCFF855CUN bed narrowPeak optimal idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF419RSJ, ENCFF495UHL, ENCFF584NKE, ENCFF961VPB 196617 ENCODE Processing Pipeline 5cef6db3c700f8b6ba43ef2088639dae https://www.encodeproject.org/files/ENCFF855CUN/@@download/ENCFF855CUN.bed.gz GRCh38 released ENCFF732ESV bigBed narrowPeak optimal idr thresholded peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1, 2 ENCFF855CUN 399091 ENCODE Processing Pipeline 3e7a17c441fc02bb19c87d5ce9cebf95 https://www.encodeproject.org/files/ENCFF732ESV/@@download/ENCFF732ESV.bigBed GRCh38 released ENCFF000RZZ bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SAK 1143999308 Vishwanath Iyer, UTA 7a84ddafe3fae9cac8ac13a7b1989b2e https://www.encodeproject.org/files/ENCFF000RZZ/@@download/ENCFF000RZZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF000SAA bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SAL 1079688052 Vishwanath Iyer, UTA 2fa9acc27ccb58ee35fc3cc48a1d73e9 https://www.encodeproject.org/files/ENCFF000SAA/@@download/ENCFF000SAA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF000SAC bigWig base overlap signal ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1106158051 Vishwanath Iyer, UTA df2f4b241ef7cf2325d57b959a72f99b https://www.encodeproject.org/files/ENCFF000SAC/@@download/ENCFF000SAC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity ENCFF000SAE bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTQ 2178976 Vishwanath Iyer, UTA 9b3d82f192291bb2e3309b09b72398bb https://www.encodeproject.org/files/ENCFF000SAE/@@download/ENCFF000SAE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF000SAF bigWig signal ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2914434378 Vishwanath Iyer, UTA 4c7328d2aea2fc0299f076d188206194 https://www.encodeproject.org/files/ENCFF000SAF/@@download/ENCFF000SAF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity ENCFF000SAK fastq reads ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1210327505 Vishwanath Iyer, UTA 0b4e84205e655e04e3273b17fffd8ed2 https://www.encodeproject.org/files/ENCFF000SAK/@@download/ENCFF000SAK.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF000SAL fastq reads ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1213375944 Vishwanath Iyer, UTA 54facbc63c88f749c570ae272d380100 https://www.encodeproject.org/files/ENCFF000SAL/@@download/ENCFF000SAL.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF001UTQ bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1397830 Vishwanath Iyer, UTA 95394af7bd63442938449bc55a19bea7 https://www.encodeproject.org/files/ENCFF001UTQ/@@download/ENCFF001UTQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity ENCFF002DBK bed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1204700 ENCODE Consortium Analysis Working Group 0cbea058963fdb97803bd31b4d28039b https://www.encodeproject.org/files/ENCFF002DBK/@@download/ENCFF002DBK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample poor library complexity ENCFF800FPH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBK 2456938 ENCODE Consortium dfbe8be92a8464c526573398200d37ae https://www.encodeproject.org/files/ENCFF800FPH/@@download/ENCFF800FPH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF282LVO bam unfiltered alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAK, ENCFF643CGH 1460798179 ENCODE Processing Pipeline 12414a1f044aad43288dde85666d118d https://www.encodeproject.org/files/ENCFF282LVO/@@download/ENCFF282LVO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF181EQP bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAK, ENCFF643CGH 685944872 ENCODE Processing Pipeline 684647ed6d6467c1f45fa1b4be03946a https://www.encodeproject.org/files/ENCFF181EQP/@@download/ENCFF181EQP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF897MGD bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAL, ENCFF643CGH 478987030 ENCODE Processing Pipeline d42995da3fe3f481c74c160c332c8285 https://www.encodeproject.org/files/ENCFF897MGD/@@download/ENCFF897MGD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF007SEC bam unfiltered alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAL, ENCFF643CGH 1381228817 ENCODE Processing Pipeline 1972aa46cdb6204d85fdffec0b09447f https://www.encodeproject.org/files/ENCFF007SEC/@@download/ENCFF007SEC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF125TZW bam unfiltered alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAK, ENCFF807MUK 1459478314 ENCODE Processing Pipeline 03033ce9e203064a2d1988987e51dce0 https://www.encodeproject.org/files/ENCFF125TZW/@@download/ENCFF125TZW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF468DTD bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAK, ENCFF807MUK 686222853 ENCODE Processing Pipeline 20411cd7c4b7b0c71330e62d79b9db23 https://www.encodeproject.org/files/ENCFF468DTD/@@download/ENCFF468DTD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF276UOC bam unfiltered alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAL, ENCFF807MUK 1380040386 ENCODE Processing Pipeline c99e3934b76d53b9d9b29d9518ab6199 https://www.encodeproject.org/files/ENCFF276UOC/@@download/ENCFF276UOC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF856ODM bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAL, ENCFF807MUK 479225484 ENCODE Processing Pipeline aa0efa41e4f5ce70d965efbfe00fe0bd https://www.encodeproject.org/files/ENCFF856ODM/@@download/ENCFF856ODM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF607TNP bigWig signal p-value ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF897MGD, ENCFF946WAV 404957694 ENCODE Processing Pipeline 3f0abe9e2084f29add0670212e7880e5 https://www.encodeproject.org/files/ENCFF607TNP/@@download/ENCFF607TNP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF805DUY bigWig signal p-value ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF181EQP, ENCFF946WAV 490037661 ENCODE Processing Pipeline c00252b9529b0ba922e87176fcda8337 https://www.encodeproject.org/files/ENCFF805DUY/@@download/ENCFF805DUY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF686IJZ bigWig signal p-value ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF181EQP, ENCFF897MGD, ENCFF946WAV 490470306 ENCODE Processing Pipeline b398596067d2b93088fe0db8632fde50 https://www.encodeproject.org/files/ENCFF686IJZ/@@download/ENCFF686IJZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF697ZLF bigWig fold change over control ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF181EQP, ENCFF897MGD, ENCFF946WAV 412547247 ENCODE Processing Pipeline 6a76cf585398c1bfd06135de037d5e62 https://www.encodeproject.org/files/ENCFF697ZLF/@@download/ENCFF697ZLF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF987PKF bigWig fold change over control ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF181EQP, ENCFF946WAV 283297341 ENCODE Processing Pipeline d82e283982e56c59ed8e0bd090c97221 https://www.encodeproject.org/files/ENCFF987PKF/@@download/ENCFF987PKF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF330WSX bigWig fold change over control ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF897MGD, ENCFF946WAV 214826084 ENCODE Processing Pipeline cc8233b168dd6212dfb535fbaeb4c5c9 https://www.encodeproject.org/files/ENCFF330WSX/@@download/ENCFF330WSX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF962IZR bed narrowPeak conservative idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF008HMA, ENCFF395NDN, ENCFF419RSJ, ENCFF766MRE 974606 ENCODE Processing Pipeline 82e3ae4884978a82889b6b3d06742985 https://www.encodeproject.org/files/ENCFF962IZR/@@download/ENCFF962IZR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF395NDN bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF181EQP, ENCFF946WAV 5505393 ENCODE Processing Pipeline 09cfcf2f1606e5bf8829e8fb3263897c https://www.encodeproject.org/files/ENCFF395NDN/@@download/ENCFF395NDN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF766MRE bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF897MGD, ENCFF946WAV 4931928 ENCODE Processing Pipeline a6fc0fbfade40bc8d2706abbfc0c6a47 https://www.encodeproject.org/files/ENCFF766MRE/@@download/ENCFF766MRE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF901QIF bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF395NDN 11203116 ENCODE Processing Pipeline 9f730ad868ecdaa9a094950f266e50a3 https://www.encodeproject.org/files/ENCFF901QIF/@@download/ENCFF901QIF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF025HLK bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF962IZR 1680658 ENCODE Processing Pipeline 13d6e0f95cec6f25d6ad3c638a281eff https://www.encodeproject.org/files/ENCFF025HLK/@@download/ENCFF025HLK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF628EUU bed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF008HMA, ENCFF395NDN, ENCFF419RSJ, ENCFF766MRE 1034421 ENCODE Processing Pipeline 77cc2f57925da39730c96e7300bd60fb https://www.encodeproject.org/files/ENCFF628EUU/@@download/ENCFF628EUU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF148RWA bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF766MRE 10914161 ENCODE Processing Pipeline 5fbb82e281122654181277bbb3c369c2 https://www.encodeproject.org/files/ENCFF148RWA/@@download/ENCFF148RWA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF008HMA bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF181EQP, ENCFF897MGD, ENCFF946WAV 6151872 ENCODE Processing Pipeline 9487468101c1360d056d4dee52603778 https://www.encodeproject.org/files/ENCFF008HMA/@@download/ENCFF008HMA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF282TSL bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF008HMA 11424611 ENCODE Processing Pipeline b2369686fcd607c7d81ba7c51e39932a https://www.encodeproject.org/files/ENCFF282TSL/@@download/ENCFF282TSL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF424NQR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF628EUU 1762995 ENCODE Processing Pipeline b422eb5808fd1a99bf6f528a06c64702 https://www.encodeproject.org/files/ENCFF424NQR/@@download/ENCFF424NQR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF932TET bigWig signal p-value ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF468DTD, ENCFF602XLT 413012797 ENCODE Processing Pipeline 1cb93ec6e3d4d767bf3d36e0fbc35f10 https://www.encodeproject.org/files/ENCFF932TET/@@download/ENCFF932TET.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF731UAI bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF856ODM 4929718 ENCODE Processing Pipeline c139685c51c08d40e6c3ea5c3a76aa7a https://www.encodeproject.org/files/ENCFF731UAI/@@download/ENCFF731UAI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF657PRI bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF468DTD, ENCFF602XLT 5506321 ENCODE Processing Pipeline 8f5896746d6ba3fface5a84081aac73d https://www.encodeproject.org/files/ENCFF657PRI/@@download/ENCFF657PRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF082YAC bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF657PRI 11200405 ENCODE Processing Pipeline 390a663aa4a318e43cfda47c94854234 https://www.encodeproject.org/files/ENCFF082YAC/@@download/ENCFF082YAC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF054SFP bed narrowPeak conservative idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF569FYX, ENCFF657PRI, ENCFF731UAI 974227 ENCODE Processing Pipeline 12f887e53a1e4090133c800419e31ee1 https://www.encodeproject.org/files/ENCFF054SFP/@@download/ENCFF054SFP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF003ZIY bigWig fold change over control ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF856ODM 214273105 ENCODE Processing Pipeline d71abc47f9934c2fab2cb92dd3c49acc https://www.encodeproject.org/files/ENCFF003ZIY/@@download/ENCFF003ZIY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF386TLD bigWig fold change over control ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF468DTD, ENCFF602XLT, ENCFF856ODM 407270193 ENCODE Processing Pipeline bd2ef84a9fccf2cc2aaf6ce16aabd387 https://www.encodeproject.org/files/ENCFF386TLD/@@download/ENCFF386TLD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF569FYX bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF468DTD, ENCFF602XLT, ENCFF856ODM 6150598 ENCODE Processing Pipeline 6e4c324738088ad24c59be48889243d3 https://www.encodeproject.org/files/ENCFF569FYX/@@download/ENCFF569FYX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF482UCC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF054SFP 1678762 ENCODE Processing Pipeline 90e4dea5a81af3c51543a499f537bb33 https://www.encodeproject.org/files/ENCFF482UCC/@@download/ENCFF482UCC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF203NHT bigWig fold change over control ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF468DTD, ENCFF602XLT 284515443 ENCODE Processing Pipeline 234b52039e73463f0be7823859a7e9a4 https://www.encodeproject.org/files/ENCFF203NHT/@@download/ENCFF203NHT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF631QKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF372SHI 1762578 ENCODE Processing Pipeline de6d5fe76072d52c1bd86c8b88f41e15 https://www.encodeproject.org/files/ENCFF631QKJ/@@download/ENCFF631QKJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF402VFC bigWig signal p-value ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF856ODM 399174465 ENCODE Processing Pipeline 5c5fe624ec7e376ceb32183131e2da49 https://www.encodeproject.org/files/ENCFF402VFC/@@download/ENCFF402VFC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF730TNA bigWig signal p-value ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF468DTD, ENCFF602XLT, ENCFF856ODM 495547877 ENCODE Processing Pipeline b549ad2d389cdb9139cf5721b5fb66f3 https://www.encodeproject.org/files/ENCFF730TNA/@@download/ENCFF730TNA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF346GXC bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF731UAI 10912555 ENCODE Processing Pipeline 6c072150e075eb1dbcc2e4841c0bf5a2 https://www.encodeproject.org/files/ENCFF346GXC/@@download/ENCFF346GXC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF614UKQ bigBed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF569FYX 11420126 ENCODE Processing Pipeline 45f5745c0e5a4680c39103c395caf6c7 https://www.encodeproject.org/files/ENCFF614UKQ/@@download/ENCFF614UKQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF372SHI bed narrowPeak optimal idr thresholded peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF569FYX, ENCFF657PRI, ENCFF731UAI 1035407 ENCODE Processing Pipeline 68a0e176e9543319f5c7a612b4098c88 https://www.encodeproject.org/files/ENCFF372SHI/@@download/ENCFF372SHI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF824RXN fastq reads ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1595678944 Richard Myers, HAIB 2d021bc73ccf642b1333286c81810a97 SRA:SRR5339386 https://www.encodeproject.org/files/ENCFF824RXN/@@download/ENCFF824RXN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF006ALN fastq reads ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1372054277 Richard Myers, HAIB 0af2f65ec7c7c081b98a5cda985adeb5 SRA:SRR5339387 https://www.encodeproject.org/files/ENCFF006ALN/@@download/ENCFF006ALN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF971QHE bam unfiltered alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF006ALN, ENCFF643CGH 1655401974 ENCODE Processing Pipeline d6f7dcfb07853add47f242e233f4f234 https://www.encodeproject.org/files/ENCFF971QHE/@@download/ENCFF971QHE.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF931HDB bam unfiltered alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF824RXN 1869136257 ENCODE Processing Pipeline e05f2f0ba95401c585b4b7c0e7483959 https://www.encodeproject.org/files/ENCFF931HDB/@@download/ENCFF931HDB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF305HRL bam unfiltered alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF006ALN, ENCFF807MUK 1650442211 ENCODE Processing Pipeline 2e13e2f758f091e0803be8b715ebb5e1 https://www.encodeproject.org/files/ENCFF305HRL/@@download/ENCFF305HRL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF141LEW bam unfiltered alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF824RXN 1866118908 ENCODE Processing Pipeline cd40d6d54d7f8a5ced596bf6ba71336e https://www.encodeproject.org/files/ENCFF141LEW/@@download/ENCFF141LEW.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126WTF bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF824RXN 1455876485 ENCODE Processing Pipeline d6f7e3208cd2d39b598b0583eee0b4fa https://www.encodeproject.org/files/ENCFF126WTF/@@download/ENCFF126WTF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF135ZFA bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF006ALN, ENCFF807MUK 1288712963 ENCODE Processing Pipeline 14aeec745be9da6d89ab94c50b51b57d https://www.encodeproject.org/files/ENCFF135ZFA/@@download/ENCFF135ZFA.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF466RAE bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF824RXN 1455453441 ENCODE Processing Pipeline d0283caa39f550888936683fe0da7558 https://www.encodeproject.org/files/ENCFF466RAE/@@download/ENCFF466RAE.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF250XOF bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF006ALN, ENCFF643CGH 1289695907 ENCODE Processing Pipeline 56ad54681e2306a1d9114b3ae40d0dc7 https://www.encodeproject.org/files/ENCFF250XOF/@@download/ENCFF250XOF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF008QMD bigWig signal p-value ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF126WTF 525988381 ENCODE Processing Pipeline cfe9bcca80565dbdd8978207fb6e0772 https://www.encodeproject.org/files/ENCFF008QMD/@@download/ENCFF008QMD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF139BWC bigWig signal p-value ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF250XOF 554180008 ENCODE Processing Pipeline 01f9fd1d710d41182791c307d8ed2d70 https://www.encodeproject.org/files/ENCFF139BWC/@@download/ENCFF139BWC.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF570ODF bigWig signal p-value ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126WTF, ENCFF250XOF 658371496 ENCODE Processing Pipeline 75b0486e02ee8efd0cde7d8c891b8126 https://www.encodeproject.org/files/ENCFF570ODF/@@download/ENCFF570ODF.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF586RIR bigWig fold change over control ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF126WTF 519962929 ENCODE Processing Pipeline 0d1e6ed68142d55390be2b2c4938ebe9 https://www.encodeproject.org/files/ENCFF586RIR/@@download/ENCFF586RIR.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF949GCG bigWig fold change over control ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF250XOF 586845833 ENCODE Processing Pipeline a60b01649b733074e5d9b7599c9dc39d https://www.encodeproject.org/files/ENCFF949GCG/@@download/ENCFF949GCG.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF118FXA bigWig fold change over control ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126WTF, ENCFF250XOF 841070994 ENCODE Processing Pipeline c1457cd253b5291c6667e4b7b953a4ae https://www.encodeproject.org/files/ENCFF118FXA/@@download/ENCFF118FXA.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF705OZK bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF126WTF 6607353 ENCODE Processing Pipeline 83112b404af0164fdc1867853d91dbd1 https://www.encodeproject.org/files/ENCFF705OZK/@@download/ENCFF705OZK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF303KFS bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF250XOF 6229036 ENCODE Processing Pipeline f9ed2cd0ffae8e74d5e242b05e5fe48d https://www.encodeproject.org/files/ENCFF303KFS/@@download/ENCFF303KFS.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF908ZBQ bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF126WTF, ENCFF250XOF 6837349 ENCODE Processing Pipeline 22c2842da2e74cae636576580ff1b7a3 https://www.encodeproject.org/files/ENCFF908ZBQ/@@download/ENCFF908ZBQ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF957DML bigBed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF303KFS 13102307 ENCODE Processing Pipeline f8a0ddb58b5d1c5f2b06f763f60ddddc https://www.encodeproject.org/files/ENCFF957DML/@@download/ENCFF957DML.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF544EXT bigBed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF705OZK 12847783 ENCODE Processing Pipeline 563b067b860eff9072a71c0dfc14ad83 https://www.encodeproject.org/files/ENCFF544EXT/@@download/ENCFF544EXT.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF893CJR bigBed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF908ZBQ 12945185 ENCODE Processing Pipeline 15917f18a59cd8610cfabd67a4d54838 https://www.encodeproject.org/files/ENCFF893CJR/@@download/ENCFF893CJR.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF369EVV bigBed narrowPeak conservative idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF589EKK 453943 ENCODE Processing Pipeline 8e45d0a2a8a3d94b9a7f460fe87e78f3 https://www.encodeproject.org/files/ENCFF369EVV/@@download/ENCFF369EVV.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF589EKK bed narrowPeak conservative idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF303KFS, ENCFF419RSJ, ENCFF705OZK, ENCFF908ZBQ 200591 ENCODE Processing Pipeline ee7be155a85f0f57a254eb4fbff307a2 https://www.encodeproject.org/files/ENCFF589EKK/@@download/ENCFF589EKK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF024QKK bed narrowPeak optimal idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF303KFS, ENCFF419RSJ, ENCFF705OZK, ENCFF908ZBQ 331437 ENCODE Processing Pipeline cd3fc5f2be8b5af5112c49835563d005 https://www.encodeproject.org/files/ENCFF024QKK/@@download/ENCFF024QKK.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF252MTX bigBed narrowPeak optimal idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF024QKK 662999 ENCODE Processing Pipeline a5297c5462dcdb938b0a143f3438b7ae https://www.encodeproject.org/files/ENCFF252MTX/@@download/ENCFF252MTX.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF608CVI bigWig signal p-value ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF466RAE 1199400206 ENCODE Processing Pipeline ae07658ed4b72674c466e6f079e46ccb https://www.encodeproject.org/files/ENCFF608CVI/@@download/ENCFF608CVI.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF640WFE bigWig signal p-value ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF135ZFA, ENCFF203ABR, ENCFF466RAE 1480921213 ENCODE Processing Pipeline b66db62d9b4fc7bc5753a2660526cc14 https://www.encodeproject.org/files/ENCFF640WFE/@@download/ENCFF640WFE.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF344EHK bigWig signal p-value ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF135ZFA, ENCFF203ABR 1209205047 ENCODE Processing Pipeline b823dcaf6c15180a6f83e7a39dbdc929 https://www.encodeproject.org/files/ENCFF344EHK/@@download/ENCFF344EHK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF040HWJ bigWig fold change over control ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF466RAE 1008332706 ENCODE Processing Pipeline a715da3ddac6270bf26056697b0682b9 https://www.encodeproject.org/files/ENCFF040HWJ/@@download/ENCFF040HWJ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF691ZIL bigWig fold change over control ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF135ZFA, ENCFF203ABR 849298195 ENCODE Processing Pipeline e646ae7dd31ca5701f804bacbc7cee26 https://www.encodeproject.org/files/ENCFF691ZIL/@@download/ENCFF691ZIL.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684MOO bigWig fold change over control ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF135ZFA, ENCFF203ABR, ENCFF466RAE 1458200903 ENCODE Processing Pipeline ae8681d918b1d4c6b85c7e0b93254bb7 https://www.encodeproject.org/files/ENCFF684MOO/@@download/ENCFF684MOO.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF222SMQ bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF466RAE 6933950 ENCODE Processing Pipeline 61b2379816819fb8c6d3c36a8de0431a https://www.encodeproject.org/files/ENCFF222SMQ/@@download/ENCFF222SMQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF361GVH bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF135ZFA, ENCFF203ABR 6238421 ENCODE Processing Pipeline 916ea4a04b1324c43a07b931cde791ef https://www.encodeproject.org/files/ENCFF361GVH/@@download/ENCFF361GVH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF224KDP bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF135ZFA, ENCFF203ABR, ENCFF466RAE 7064808 ENCODE Processing Pipeline 53eaeded7f6c6ed352ea08e28b64a37a https://www.encodeproject.org/files/ENCFF224KDP/@@download/ENCFF224KDP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF095SYT bigBed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF222SMQ 12679341 ENCODE Processing Pipeline 3921476abe6a52a58ddbf748f5c7a944 https://www.encodeproject.org/files/ENCFF095SYT/@@download/ENCFF095SYT.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF671CAC bigBed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF361GVH 13418897 ENCODE Processing Pipeline 5a6a782330dfffedb266f6e32dc3d677 https://www.encodeproject.org/files/ENCFF671CAC/@@download/ENCFF671CAC.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF625OLM bigBed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF224KDP 12856391 ENCODE Processing Pipeline e30f06d9b6c15d144d1f3a2132967173 https://www.encodeproject.org/files/ENCFF625OLM/@@download/ENCFF625OLM.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF332TBE bigBed narrowPeak conservative idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF242JAR 418037 ENCODE Processing Pipeline 8953fe397faf5f65835b5583f9ee084e https://www.encodeproject.org/files/ENCFF332TBE/@@download/ENCFF332TBE.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF242JAR bed narrowPeak conservative idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF222SMQ, ENCFF224KDP, ENCFF361GVH 223913 ENCODE Processing Pipeline 7420d4a8ff141a00cae9430d2e26d0be https://www.encodeproject.org/files/ENCFF242JAR/@@download/ENCFF242JAR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF142TZG bed narrowPeak optimal idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF222SMQ, ENCFF224KDP, ENCFF361GVH 297054 ENCODE Processing Pipeline fe10afd1e58d66ccf4a66a3ebdb7ed17 https://www.encodeproject.org/files/ENCFF142TZG/@@download/ENCFF142TZG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF965PKS bigBed narrowPeak optimal idr thresholded peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF142TZG 629937 ENCODE Processing Pipeline 0b6e62510643b808229c474cc6fec8f7 https://www.encodeproject.org/files/ENCFF965PKS/@@download/ENCFF965PKS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000NXM bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NYB 1793789274 Richard Myers, HAIB 150f127a253c3ae3ae2c79bcb22f97cf https://www.encodeproject.org/files/ENCFF000NXM/@@download/ENCFF000NXM.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXN bigBed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXO 672787 Richard Myers, HAIB acd316aee41780fc3490e501beb67d6d https://www.encodeproject.org/files/ENCFF000NXN/@@download/ENCFF000NXN.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXO bigBed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXP 690892 Richard Myers, HAIB b0f7827d80fdc9f02edf4cea0c80ec86 https://www.encodeproject.org/files/ENCFF000NXO/@@download/ENCFF000NXO.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXP bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NXW 1541117968 Richard Myers, HAIB cd2273241d494c7d85eed3d3bb1ed3f0 https://www.encodeproject.org/files/ENCFF000NXP/@@download/ENCFF000NXP.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NXQ bigWig raw signal ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 22069294 Richard Myers, HAIB 588d0af7e5a011d462c60643cc716f57 https://www.encodeproject.org/files/ENCFF000NXQ/@@download/ENCFF000NXQ.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NXR bigWig raw signal ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 20743323 Richard Myers, HAIB e7789cf4a9b3b8a5a892ccb99d51b430 https://www.encodeproject.org/files/ENCFF000NXR/@@download/ENCFF000NXR.bigWig hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000NXW fastq reads ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1537635698 Richard Myers, HAIB c5c0b75d1b400ac5ecf1f31a4a528844 https://www.encodeproject.org/files/ENCFF000NXW/@@download/ENCFF000NXW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NYB fastq reads ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1799863527 Richard Myers, HAIB 12757dc74251a44922d836a50f5ea382 https://www.encodeproject.org/files/ENCFF000NYB/@@download/ENCFF000NYB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TXO bed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 1 329953 Richard Myers, HAIB 647e9072151aec4f235e617c86835b73 https://www.encodeproject.org/files/ENCFF001TXO/@@download/ENCFF001TXO.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TXP bed broadPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 1 359974 Richard Myers, HAIB 28e17e60df32b13264ab6d21de9e8b10 https://www.encodeproject.org/files/ENCFF001TXP/@@download/ENCFF001TXP.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHF bed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 234700 ENCODE Consortium Analysis Working Group e86ad868e90ad5be56aa38b8f5cd3ab1 https://www.encodeproject.org/files/ENCFF002CHF/@@download/ENCFF002CHF.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF873PNY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHF 533481 ENCODE Consortium ec8f10f55c255466af71f1c29998bdf8 https://www.encodeproject.org/files/ENCFF873PNY/@@download/ENCFF873PNY.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF922QNO bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF643CGH 1670764871 ENCODE Processing Pipeline 444d9209cad2323cc854c2f7648b6141 https://www.encodeproject.org/files/ENCFF922QNO/@@download/ENCFF922QNO.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF983YCI bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF643CGH 1016241355 ENCODE Processing Pipeline 2430c20788da57425b0d39fe6b214da6 https://www.encodeproject.org/files/ENCFF983YCI/@@download/ENCFF983YCI.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF207QTV bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF643CGH 1171354888 ENCODE Processing Pipeline 972d699532b32b05425ab4c48a1393ab https://www.encodeproject.org/files/ENCFF207QTV/@@download/ENCFF207QTV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF414CDS bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF643CGH 1935414200 ENCODE Processing Pipeline 797114f45d8b95db32b87309578ec7dd https://www.encodeproject.org/files/ENCFF414CDS/@@download/ENCFF414CDS.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF224MHM bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF807MUK 1670191507 ENCODE Processing Pipeline 3fda2c8563235a278cb5b9ce9f636311 https://www.encodeproject.org/files/ENCFF224MHM/@@download/ENCFF224MHM.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF214RUL bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF807MUK 1009716777 ENCODE Processing Pipeline 17cc91e4ed261e46815cf9cd818e46b9 https://www.encodeproject.org/files/ENCFF214RUL/@@download/ENCFF214RUL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF991DJH bam unfiltered alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF807MUK 1934516312 ENCODE Processing Pipeline f67020b6d8941941893528626e8b9d54 https://www.encodeproject.org/files/ENCFF991DJH/@@download/ENCFF991DJH.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF867LOD bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF807MUK 1164055608 ENCODE Processing Pipeline 300ab185e0711db6216286eece31479d https://www.encodeproject.org/files/ENCFF867LOD/@@download/ENCFF867LOD.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF513WJY bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF207QTV, ENCFF537DAJ, ENCFF983YCI 840000071 ENCODE Processing Pipeline f023e211a21c22574b8301e59d7c0d9a https://www.encodeproject.org/files/ENCFF513WJY/@@download/ENCFF513WJY.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599BQZ bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF983YCI 649705642 ENCODE Processing Pipeline 3907bd4253beafbd3c1a47186ee84a75 https://www.encodeproject.org/files/ENCFF599BQZ/@@download/ENCFF599BQZ.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF255XOJ bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF983YCI 546590319 ENCODE Processing Pipeline 879afe4a423e4ccb75a73f70509d30b8 https://www.encodeproject.org/files/ENCFF255XOJ/@@download/ENCFF255XOJ.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF526YEF bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF207QTV, ENCFF537DAJ 598205910 ENCODE Processing Pipeline 90a7430493e037f34e93cd846d13e0e3 https://www.encodeproject.org/files/ENCFF526YEF/@@download/ENCFF526YEF.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF564YOV bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF207QTV, ENCFF537DAJ, ENCFF983YCI 930211762 ENCODE Processing Pipeline a897b53920cd4c6a97ee35eaa7304fa4 https://www.encodeproject.org/files/ENCFF564YOV/@@download/ENCFF564YOV.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF478YBA bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF207QTV, ENCFF537DAJ 6792504 ENCODE Processing Pipeline 63f519c2c22d0909a9d08c187b776da3 https://www.encodeproject.org/files/ENCFF478YBA/@@download/ENCFF478YBA.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF370SOF bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF207QTV, ENCFF537DAJ, ENCFF983YCI 7127201 ENCODE Processing Pipeline aa9585c6eb71c02edb3287e5ab6abd30 https://www.encodeproject.org/files/ENCFF370SOF/@@download/ENCFF370SOF.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF450EDU bed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF370SOF, ENCFF419RSJ, ENCFF478YBA, ENCFF755GLO 238769 ENCODE Processing Pipeline d06509918f86269cddec7c4b00468033 https://www.encodeproject.org/files/ENCFF450EDU/@@download/ENCFF450EDU.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF108NRH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF138ZBJ 556891 ENCODE Processing Pipeline 7ac64a34d2b55c11668d5e406af6fff3 https://www.encodeproject.org/files/ENCFF108NRH/@@download/ENCFF108NRH.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF025EHI bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF207QTV, ENCFF537DAJ 592070421 ENCODE Processing Pipeline 838191504c574c0b86a679d5f85cb520 https://www.encodeproject.org/files/ENCFF025EHI/@@download/ENCFF025EHI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599QSP bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF478YBA 12740099 ENCODE Processing Pipeline 9ef9d61e4b8f206dd9791c5eeacf11b0 https://www.encodeproject.org/files/ENCFF599QSP/@@download/ENCFF599QSP.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF755GLO bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF983YCI 6873880 ENCODE Processing Pipeline 6aaf1b2667300cde29a940eec5779d2f https://www.encodeproject.org/files/ENCFF755GLO/@@download/ENCFF755GLO.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF703GDL bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF755GLO 12396640 ENCODE Processing Pipeline 84f432bf012df13146cfd2998fc96f51 https://www.encodeproject.org/files/ENCFF703GDL/@@download/ENCFF703GDL.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF126PVU bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF370SOF 12444332 ENCODE Processing Pipeline 4568637ecc5577d68407cf073bd98698 https://www.encodeproject.org/files/ENCFF126PVU/@@download/ENCFF126PVU.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF362CDO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF450EDU 503070 ENCODE Processing Pipeline 4018fa8cd5aec1506f1da320229eb864 https://www.encodeproject.org/files/ENCFF362CDO/@@download/ENCFF362CDO.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF138ZBJ bed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF370SOF, ENCFF419RSJ, ENCFF478YBA, ENCFF755GLO 273181 ENCODE Processing Pipeline 6f202f1275baafd31b76d9db26cebdf0 https://www.encodeproject.org/files/ENCFF138ZBJ/@@download/ENCFF138ZBJ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF958GPJ bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 659222024 ENCODE Processing Pipeline 3cd8f20fc67762855a62b0bb0aa5e3c3 https://www.encodeproject.org/files/ENCFF958GPJ/@@download/ENCFF958GPJ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF161UXI bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 608882653 ENCODE Processing Pipeline 528bd6acdf5a6a4fc59bffe6212abdb1 https://www.encodeproject.org/files/ENCFF161UXI/@@download/ENCFF161UXI.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF838ATU bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 6851894 ENCODE Processing Pipeline 5c5595269451619d2c31fc7ccea14596 https://www.encodeproject.org/files/ENCFF838ATU/@@download/ENCFF838ATU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF912NOF bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 591922419 ENCODE Processing Pipeline d1f295c7716ab7923fa6170dd654acaa https://www.encodeproject.org/files/ENCFF912NOF/@@download/ENCFF912NOF.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF186XBP bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 6878540 ENCODE Processing Pipeline b0f0c9c1d715adb6e51447102a105876 https://www.encodeproject.org/files/ENCFF186XBP/@@download/ENCFF186XBP.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF020JYN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF409QJU 569374 ENCODE Processing Pipeline 00a3bf3407835e79d650aae9152e1463 https://www.encodeproject.org/files/ENCFF020JYN/@@download/ENCFF020JYN.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF700CTW bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 539804378 ENCODE Processing Pipeline a1bbc06685e4e0576e488bccd6a8273a https://www.encodeproject.org/files/ENCFF700CTW/@@download/ENCFF700CTW.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF963CDS bigWig fold change over control ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214RUL, ENCFF508HCX, ENCFF867LOD 919766356 ENCODE Processing Pipeline beaa42f0b87b930a7ea9ed48a27f8319 https://www.encodeproject.org/files/ENCFF963CDS/@@download/ENCFF963CDS.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF065IKP bigWig signal p-value ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214RUL, ENCFF508HCX, ENCFF867LOD 834842270 ENCODE Processing Pipeline 348ca79985af98d82a4d7fb56ecbd2fe https://www.encodeproject.org/files/ENCFF065IKP/@@download/ENCFF065IKP.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF948UJN bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214RUL, ENCFF508HCX, ENCFF867LOD 7132463 ENCODE Processing Pipeline e057f3189951372692545957c14413ee https://www.encodeproject.org/files/ENCFF948UJN/@@download/ENCFF948UJN.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF567DZT bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF838ATU 12814998 ENCODE Processing Pipeline e892e9c5d04d41c1b60a50ef6f599576 https://www.encodeproject.org/files/ENCFF567DZT/@@download/ENCFF567DZT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF714DUT bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF186XBP 12425122 ENCODE Processing Pipeline db18177cd4c8e1c182138e2ca6f23938 https://www.encodeproject.org/files/ENCFF714DUT/@@download/ENCFF714DUT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF742OFT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF359EFT 525913 ENCODE Processing Pipeline 6d11e127d4196de128f01deb5b21d9d5 https://www.encodeproject.org/files/ENCFF742OFT/@@download/ENCFF742OFT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF622HSC bigBed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF948UJN 12492263 ENCODE Processing Pipeline 83e9cb953516d6bbb63dfb196d367d61 https://www.encodeproject.org/files/ENCFF622HSC/@@download/ENCFF622HSC.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF359EFT bed narrowPeak conservative idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF186XBP, ENCFF838ATU, ENCFF948UJN 234706 ENCODE Processing Pipeline 73d24d9b9ce1a201a165ea6e36994ebf https://www.encodeproject.org/files/ENCFF359EFT/@@download/ENCFF359EFT.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF409QJU bed narrowPeak optimal idr thresholded peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF186XBP, ENCFF838ATU, ENCFF948UJN 261869 ENCODE Processing Pipeline 06580d3142d49ee39bae07fed781c8f3 https://www.encodeproject.org/files/ENCFF409QJU/@@download/ENCFF409QJU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF813ECD bam unfiltered alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 100 ENCFF054XVE, ENCFF556DXX, ENCFF807MUK 6274220315 ENCODE Processing Pipeline f5e75935f812d2a84d78e50624cd504a https://www.encodeproject.org/files/ENCFF813ECD/@@download/ENCFF813ECD.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF135CAY bam unfiltered alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 100 ENCFF447QOS, ENCFF807MUK, ENCFF979JXL 4648382049 ENCODE Processing Pipeline 6c3da7786e199fdc19bda59a9b0e8249 https://www.encodeproject.org/files/ENCFF135CAY/@@download/ENCFF135CAY.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF447QOS fastq reads ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF979JXL 2200883687 Michael Snyder, Stanford 753e0ff2c5079973d87690e11157f590 https://www.encodeproject.org/files/ENCFF447QOS/@@download/ENCFF447QOS.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTS/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF979JXL fastq reads ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF447QOS 2080348379 Michael Snyder, Stanford d0f900b925307537ed64aecb6ca6bc5c https://www.encodeproject.org/files/ENCFF979JXL/@@download/ENCFF979JXL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFG/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF556DXX fastq reads ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF054XVE 2845429868 Michael Snyder, Stanford 2c2f3b6e0ee0b00e7674c8aa3cb36ad3 https://www.encodeproject.org/files/ENCFF556DXX/@@download/ENCFF556DXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF054XVE fastq reads ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF556DXX 2964075970 Michael Snyder, Stanford 95acac58031ae66eeb5ba5f3efc7e7b6 https://www.encodeproject.org/files/ENCFF054XVE/@@download/ENCFF054XVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ released low read depth experiment not submitted to GEO partially characterized antibody ENCFF176QWX bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 100 ENCFF447QOS, ENCFF807MUK, ENCFF979JXL 3323065121 ENCODE Processing Pipeline 930479be585aa9115ae9bc1d280ccf14 https://www.encodeproject.org/files/ENCFF176QWX/@@download/ENCFF176QWX.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF880BYE bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 100 ENCFF054XVE, ENCFF556DXX, ENCFF807MUK 4968086902 ENCODE Processing Pipeline 231c0c602e0a2b4dbde9b973997c4a4c https://www.encodeproject.org/files/ENCFF880BYE/@@download/ENCFF880BYE.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF986BKK bigWig signal p-value ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF880BYE 982944796 ENCODE Processing Pipeline a95192c5995a2b43816bec7b61ab1c2d https://www.encodeproject.org/files/ENCFF986BKK/@@download/ENCFF986BKK.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF149IRE bigWig signal p-value ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF176QWX 815514944 ENCODE Processing Pipeline 0c1ec059f4c364bb3f1966b9680746aa https://www.encodeproject.org/files/ENCFF149IRE/@@download/ENCFF149IRE.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF522EPX bigWig signal p-value ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF176QWX, ENCFF583FAG, ENCFF880BYE 1862473301 ENCODE Processing Pipeline c8f360db1465b05977b7e46d6d1802c1 https://www.encodeproject.org/files/ENCFF522EPX/@@download/ENCFF522EPX.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF837UFE bigWig fold change over control ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF880BYE 1153190518 ENCODE Processing Pipeline 82665c4fa8e8a3af7d9328cba8042348 https://www.encodeproject.org/files/ENCFF837UFE/@@download/ENCFF837UFE.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF904GRI bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF176QWX, ENCFF583FAG, ENCFF880BYE 7229107 ENCODE Processing Pipeline a5de7dd3729907cf15a08990d981b5b0 https://www.encodeproject.org/files/ENCFF904GRI/@@download/ENCFF904GRI.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF150XAX bigBed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF994VHQ 13229743 ENCODE Processing Pipeline 4449f7000b0bb60de6ac5bc70600340b https://www.encodeproject.org/files/ENCFF150XAX/@@download/ENCFF150XAX.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF598EBW bigBed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF456TVJ 13301316 ENCODE Processing Pipeline d469905397cb145314411f87fd5563ff https://www.encodeproject.org/files/ENCFF598EBW/@@download/ENCFF598EBW.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF983ODU bed narrowPeak conservative idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF456TVJ, ENCFF904GRI, ENCFF994VHQ 326672 ENCODE Processing Pipeline ea74cefd94792170e1cefb867b772f3c https://www.encodeproject.org/files/ENCFF983ODU/@@download/ENCFF983ODU.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF479KZT bigWig fold change over control ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF176QWX 963004436 ENCODE Processing Pipeline 7967209a71e6867363795a2bdf03283b https://www.encodeproject.org/files/ENCFF479KZT/@@download/ENCFF479KZT.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF456TVJ bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF176QWX 6474005 ENCODE Processing Pipeline 1f7564f1c77b5179d1ac9819aa4c5224 https://www.encodeproject.org/files/ENCFF456TVJ/@@download/ENCFF456TVJ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF563AEQ bed narrowPeak optimal idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF456TVJ, ENCFF904GRI, ENCFF994VHQ 505686 ENCODE Processing Pipeline 6af821ae27914006130f70fc0c4f2ea3 https://www.encodeproject.org/files/ENCFF563AEQ/@@download/ENCFF563AEQ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF955GAW bigWig fold change over control ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF049MPQ, ENCFF176QWX, ENCFF583FAG, ENCFF880BYE 2009307239 ENCODE Processing Pipeline ec9d8968f8877e88cb523775fc754352 https://www.encodeproject.org/files/ENCFF955GAW/@@download/ENCFF955GAW.bigWig hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF994VHQ bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF880BYE 6865216 ENCODE Processing Pipeline f513f1e4f4fc06faa70412fb4d6a9253 https://www.encodeproject.org/files/ENCFF994VHQ/@@download/ENCFF994VHQ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF361HDS bigBed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF904GRI 13220938 ENCODE Processing Pipeline 64dd0109d7e31d6cd72165dc9022fa33 https://www.encodeproject.org/files/ENCFF361HDS/@@download/ENCFF361HDS.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF385GUA bigBed narrowPeak conservative idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF983ODU 716117 ENCODE Processing Pipeline d3fc3f9b954f29f3ce30f506867f074f https://www.encodeproject.org/files/ENCFF385GUA/@@download/ENCFF385GUA.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF332PNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF563AEQ 1007212 ENCODE Processing Pipeline 46623f034d890c9e83894711621eccac https://www.encodeproject.org/files/ENCFF332PNQ/@@download/ENCFF332PNQ.bigBed hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF791CYK bam unfiltered alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 100 ENCFF447QOS, ENCFF643CGH, ENCFF979JXL 4648903572 ENCODE Processing Pipeline 509912e77b6cda350fe6a3eb7e6e9fda https://www.encodeproject.org/files/ENCFF791CYK/@@download/ENCFF791CYK.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF812AFJ bam unfiltered alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 100 ENCFF054XVE, ENCFF556DXX, ENCFF643CGH 6277481309 ENCODE Processing Pipeline dd702412f197e2f535c504ba68396b30 https://www.encodeproject.org/files/ENCFF812AFJ/@@download/ENCFF812AFJ.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF577HXX bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 100 ENCFF447QOS, ENCFF643CGH, ENCFF979JXL 3327766359 ENCODE Processing Pipeline cfa348318de99cf206601f476ea1f5fe https://www.encodeproject.org/files/ENCFF577HXX/@@download/ENCFF577HXX.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF474GOR bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 100 ENCFF054XVE, ENCFF556DXX, ENCFF643CGH 4975631098 ENCODE Processing Pipeline a4c5f8c30708e019d361300e491b23c6 https://www.encodeproject.org/files/ENCFF474GOR/@@download/ENCFF474GOR.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF465WFV bigWig signal p-value ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF474GOR 943318277 ENCODE Processing Pipeline 6124fee2151138409c65adbd359fcd83 https://www.encodeproject.org/files/ENCFF465WFV/@@download/ENCFF465WFV.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF783VNT bigWig signal p-value ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF577HXX 1096704376 ENCODE Processing Pipeline 7ba5d45ea0d4f3f818e143318c1a4cfc https://www.encodeproject.org/files/ENCFF783VNT/@@download/ENCFF783VNT.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF965LFL bigWig signal p-value ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF474GOR, ENCFF577HXX 1896290871 ENCODE Processing Pipeline 84f4db0a8d0aafe4b3eeb39eb57618aa https://www.encodeproject.org/files/ENCFF965LFL/@@download/ENCFF965LFL.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF334HFP bigWig fold change over control ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF474GOR 1209232355 ENCODE Processing Pipeline e41754199756d5c454973af3b679ef1a https://www.encodeproject.org/files/ENCFF334HFP/@@download/ENCFF334HFP.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF097UZP bigWig fold change over control ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF577HXX 976790992 ENCODE Processing Pipeline 864c7b7cd01aa1ac9577987d210e87d4 https://www.encodeproject.org/files/ENCFF097UZP/@@download/ENCFF097UZP.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF357JHD bigWig fold change over control ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF474GOR, ENCFF577HXX 2013430311 ENCODE Processing Pipeline 06315ef70bc743cd8fb6d68098751549 https://www.encodeproject.org/files/ENCFF357JHD/@@download/ENCFF357JHD.bigWig GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF264RDR bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF291AFY, ENCFF426RDP, ENCFF474GOR, ENCFF577HXX 7224920 ENCODE Processing Pipeline db86c11979880c3994fa1e4eb7e472af https://www.encodeproject.org/files/ENCFF264RDR/@@download/ENCFF264RDR.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF864ORB bigBed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF506BLN 13238347 ENCODE Processing Pipeline 047d74d0af913b0658fe15092f3ce560 https://www.encodeproject.org/files/ENCFF864ORB/@@download/ENCFF864ORB.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF090HYR bigBed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF264RDR 13240869 ENCODE Processing Pipeline 97862f751ba0c4b7bac960fabe2e65ac https://www.encodeproject.org/files/ENCFF090HYR/@@download/ENCFF090HYR.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF506BLN bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF426RDP, ENCFF474GOR 6769442 ENCODE Processing Pipeline d237afe063017344bcd3f69ff4e18fd8 https://www.encodeproject.org/files/ENCFF506BLN/@@download/ENCFF506BLN.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF425SEX bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF291AFY, ENCFF577HXX 6401597 ENCODE Processing Pipeline 0f0dcfb08da3944969d37059f8025d8a https://www.encodeproject.org/files/ENCFF425SEX/@@download/ENCFF425SEX.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF539RGW bigBed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF425SEX 13356771 ENCODE Processing Pipeline 961bfcdbcd0edf7aa2038496f15ff560 https://www.encodeproject.org/files/ENCFF539RGW/@@download/ENCFF539RGW.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF174SKR bed narrowPeak conservative idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF264RDR, ENCFF419RSJ, ENCFF425SEX, ENCFF506BLN 331853 ENCODE Processing Pipeline bb9e421bf5d1566f4ea9cab5f4b6c481 https://www.encodeproject.org/files/ENCFF174SKR/@@download/ENCFF174SKR.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF063STU bigBed narrowPeak conservative idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF174SKR 724915 ENCODE Processing Pipeline 6e2c07e698869f29f176dd502a583435 https://www.encodeproject.org/files/ENCFF063STU/@@download/ENCFF063STU.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF004DUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF786XJV 1027537 ENCODE Processing Pipeline 8890ce33f171c5a241e4e28a3d4f381f https://www.encodeproject.org/files/ENCFF004DUZ/@@download/ENCFF004DUZ.bigBed GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF786XJV bed narrowPeak optimal idr thresholded peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF264RDR, ENCFF419RSJ, ENCFF425SEX, ENCFF506BLN 519189 ENCODE Processing Pipeline 6454d2bdc018b81ef842bbd0dd041d6b https://www.encodeproject.org/files/ENCFF786XJV/@@download/ENCFF786XJV.bed.gz GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF000WKO bam alignments ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WKY 193360681 Michael Snyder, Stanford 8b1299e1dd79ed8b023bd80d4b22d112 https://www.encodeproject.org/files/ENCFF000WKO/@@download/ENCFF000WKO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WKP bam alignments ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WLB 206408201 Michael Snyder, Stanford 4f8627064e48e5e6aa23aacb4259903c https://www.encodeproject.org/files/ENCFF000WKP/@@download/ENCFF000WKP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WKQ bam alignments ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WKT 157126439 Michael Snyder, Stanford e70b7515b864ff31cc66615ed51fc169 https://www.encodeproject.org/files/ENCFF000WKQ/@@download/ENCFF000WKQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WKR bigBed narrowPeak peaks ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGC 767313 Michael Snyder, Stanford a4c0870333019c369e24b5205a73be7f https://www.encodeproject.org/files/ENCFF000WKR/@@download/ENCFF000WKR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WKS bigWig signal ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 192340253 Michael Snyder, Stanford 6b9869c6f9b499ca603bf57405083e06 https://www.encodeproject.org/files/ENCFF000WKS/@@download/ENCFF000WKS.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WKT fastq reads ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 127491911 Michael Snyder, Stanford 2cc3f44c30b70b57cae2e120b00e835d https://www.encodeproject.org/files/ENCFF000WKT/@@download/ENCFF000WKT.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WKY fastq reads ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 162996365 Michael Snyder, Stanford db76628c826427937ecf3a15c211f75a https://www.encodeproject.org/files/ENCFF000WKY/@@download/ENCFF000WKY.fastq.gz Illumina Genome Analyzer /files/ENCFF000WKI/ released biological replicates with identical biosample insufficient read length ENCFF000WLB fastq reads ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 176687330 Michael Snyder, Stanford d4aa580f76fb7e41410709729ebd5a63 https://www.encodeproject.org/files/ENCFF000WLB/@@download/ENCFF000WLB.fastq.gz Illumina Genome Analyzer /files/ENCFF000WJW/ released biological replicates with identical biosample insufficient read length ENCFF001VGC bed narrowPeak peaks ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 319988 Michael Snyder, Stanford 2454a58c3ca4573d62fdd07f36fce4f8 https://www.encodeproject.org/files/ENCFF001VGC/@@download/ENCFF001VGC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CQE bed narrowPeak optimal idr thresholded peaks ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 390371 ENCODE Consortium Analysis Working Group 7dcd217eec787bc084b5d1b5b6af9089 https://www.encodeproject.org/files/ENCFF002CQE/@@download/ENCFF002CQE.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF727NJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQE 1196157 ENCODE Consortium 931b1b463b23805fd1f3e89e75fe9838 https://www.encodeproject.org/files/ENCFF727NJQ/@@download/ENCFF727NJQ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YCX bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001VLQ 3272539 Michael Snyder, Stanford 34f953508a9172a5829ce188879d3226 https://www.encodeproject.org/files/ENCFF000YCX/@@download/ENCFF000YCX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YCY fastq reads ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1014929060 Michael Snyder, Stanford 8e085c1f3013b594dd16d658a41c1bd7 https://www.encodeproject.org/files/ENCFF000YCY/@@download/ENCFF000YCY.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCQ/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YDA fastq reads ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 945388372 Michael Snyder, Stanford 958e1dcf74cd17fd0bbe13cdfb3fa320 https://www.encodeproject.org/files/ENCFF000YDA/@@download/ENCFF000YDA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCS/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YDC bigWig signal ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000YDD, ENCFF000YDE 403862534 Michael Snyder, Stanford b28e27b355b0697f22097251349f7a3b https://www.encodeproject.org/files/ENCFF000YDC/@@download/ENCFF000YDC.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YDD bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 1 ENCFF000YCY 571610002 Michael Snyder, Stanford da1907569faa2676f34fe94b933acfa4 https://www.encodeproject.org/files/ENCFF000YDD/@@download/ENCFF000YDD.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YDE bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 1 ENCFF000YDA 533359754 Michael Snyder, Stanford f37caa301ca6f20f3e10b5bd41b8c497 https://www.encodeproject.org/files/ENCFF000YDE/@@download/ENCFF000YDE.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VLQ bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000YDD, ENCFF000YDE 1468108 Michael Snyder, Stanford a8149f9c8566eea3cb6e4bea34df9ed0 https://www.encodeproject.org/files/ENCFF001VLQ/@@download/ENCFF001VLQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF002CVI bed narrowPeak optimal idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000YDD, ENCFF000YDE 927902 ENCODE Consortium Analysis Working Group 657bd8cabd9ba234ac3cd467071a665a https://www.encodeproject.org/files/ENCFF002CVI/@@download/ENCFF002CVI.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF326ARC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002CVI 1934843 ENCODE Consortium c7c146ea75d96153495d989a25d8e88d https://www.encodeproject.org/files/ENCFF326ARC/@@download/ENCFF326ARC.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF150DNM bam unfiltered alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCY, ENCFF807MUK 1136134475 ENCODE Processing Pipeline be6a307cca6d4687a22d7a685548978d https://www.encodeproject.org/files/ENCFF150DNM/@@download/ENCFF150DNM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF868RZC bam unfiltered alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YDA, ENCFF807MUK 1049481815 ENCODE Processing Pipeline 8930b2c0296eebdf2b0d84dd0b01f4ed https://www.encodeproject.org/files/ENCFF868RZC/@@download/ENCFF868RZC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039HBE bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCY, ENCFF807MUK 810519020 ENCODE Processing Pipeline 80dc16cd0ee9ec8ded03c81b8c2bd7a1 https://www.encodeproject.org/files/ENCFF039HBE/@@download/ENCFF039HBE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198ZBU bigWig signal p-value ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038LCM, ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 991190569 ENCODE Processing Pipeline c831d3bb02dd664112b72e477d4eeec6 https://www.encodeproject.org/files/ENCFF198ZBU/@@download/ENCFF198ZBU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF917BUD bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF886HLJ 11803445 ENCODE Processing Pipeline 194b20d6b85a33eca3226a1a1ed60739 https://www.encodeproject.org/files/ENCFF917BUD/@@download/ENCFF917BUD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF038LCM bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YDA, ENCFF807MUK 728648445 ENCODE Processing Pipeline 41b3df03be1366cd189283b9d134de1a https://www.encodeproject.org/files/ENCFF038LCM/@@download/ENCFF038LCM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF706WHD bigWig signal p-value ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 715930816 ENCODE Processing Pipeline 7c0ea4f9b01314e9c3e209fbb6dbeeba https://www.encodeproject.org/files/ENCFF706WHD/@@download/ENCFF706WHD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF110CDW bigWig signal p-value ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF038LCM, ENCFF191DFR, ENCFF601AUG 611364847 ENCODE Processing Pipeline bfa299c0cc139e4cdfa6011f241b7599 https://www.encodeproject.org/files/ENCFF110CDW/@@download/ENCFF110CDW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189FQK bigWig fold change over control ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 519970993 ENCODE Processing Pipeline d82874ccb4d09b8e9ac2b1186d9bd426 https://www.encodeproject.org/files/ENCFF189FQK/@@download/ENCFF189FQK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF273HES bigWig fold change over control ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF038LCM, ENCFF191DFR, ENCFF601AUG 497010718 ENCODE Processing Pipeline 8fe6bb6ad164e59f38a422b1f8635906 https://www.encodeproject.org/files/ENCFF273HES/@@download/ENCFF273HES.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF886HLJ bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 5774824 ENCODE Processing Pipeline 4225baa13e5ecc5237a91792904b6ead https://www.encodeproject.org/files/ENCFF886HLJ/@@download/ENCFF886HLJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF497YWO bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF038LCM, ENCFF191DFR, ENCFF601AUG 5439096 ENCODE Processing Pipeline a6f6f6bccba3d8c632d1487bb6dfd303 https://www.encodeproject.org/files/ENCFF497YWO/@@download/ENCFF497YWO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185BIA bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF497YWO 11727102 ENCODE Processing Pipeline c2e8329cdb4b1e7b1d3dd125dee003b4 https://www.encodeproject.org/files/ENCFF185BIA/@@download/ENCFF185BIA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF808HZT bed narrowPeak conservative idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF399JDJ, ENCFF497YWO, ENCFF886HLJ 774310 ENCODE Processing Pipeline ab1c648a15dcd9ee6967ddb60591a623 https://www.encodeproject.org/files/ENCFF808HZT/@@download/ENCFF808HZT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF147HBO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF808HZT 1383551 ENCODE Processing Pipeline de6fc20c89d2559d4c559ed542f638f1 https://www.encodeproject.org/files/ENCFF147HBO/@@download/ENCFF147HBO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF035LMY bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF399JDJ 12071354 ENCODE Processing Pipeline 00c5965fd75181e12ca628a88005b860 https://www.encodeproject.org/files/ENCFF035LMY/@@download/ENCFF035LMY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF244VPO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF593MEB 1444044 ENCODE Processing Pipeline 084a7199d1bbb7b644d7ed1d7b3c9daa https://www.encodeproject.org/files/ENCFF244VPO/@@download/ENCFF244VPO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF399JDJ bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038LCM, ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 6484298 ENCODE Processing Pipeline 0f52c8cd3e71b433db23c3f7725054b2 https://www.encodeproject.org/files/ENCFF399JDJ/@@download/ENCFF399JDJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430NXF bigWig fold change over control ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038LCM, ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 848843413 ENCODE Processing Pipeline 8673dbb1f48e8f06ada5bcc1fdd0940b https://www.encodeproject.org/files/ENCFF430NXF/@@download/ENCFF430NXF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF593MEB bed narrowPeak optimal idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF399JDJ, ENCFF497YWO, ENCFF886HLJ 821055 ENCODE Processing Pipeline 038696f5c8018caee2117388898f53fd https://www.encodeproject.org/files/ENCFF593MEB/@@download/ENCFF593MEB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF044ZFD bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YDA, ENCFF643CGH 728262178 ENCODE Processing Pipeline 276abd274341e7bd4d672c17cf8ffaba https://www.encodeproject.org/files/ENCFF044ZFD/@@download/ENCFF044ZFD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF180NNK bam unfiltered alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YDA, ENCFF643CGH 1054413083 ENCODE Processing Pipeline cfc35afefee255e6b645b4e688d271f7 https://www.encodeproject.org/files/ENCFF180NNK/@@download/ENCFF180NNK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299POX bam unfiltered alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCY, ENCFF643CGH 1141485441 ENCODE Processing Pipeline 7abf639198583c295fca44618da5f59b https://www.encodeproject.org/files/ENCFF299POX/@@download/ENCFF299POX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748XLG bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCY, ENCFF643CGH 810061375 ENCODE Processing Pipeline 1375ba0eaea33bea429d4ced8663e8a4 https://www.encodeproject.org/files/ENCFF748XLG/@@download/ENCFF748XLG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF401SPK bigWig signal p-value ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF748XLG, ENCFF823WOO 676104406 ENCODE Processing Pipeline eb79c59bac22c6e58a11558a417fb175 https://www.encodeproject.org/files/ENCFF401SPK/@@download/ENCFF401SPK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF264ASK bigWig signal p-value ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF044ZFD, ENCFF494UKO, ENCFF823WOO 601743054 ENCODE Processing Pipeline e5dbade233b77314717c0b6c44585a8d https://www.encodeproject.org/files/ENCFF264ASK/@@download/ENCFF264ASK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF372IBM bigWig signal p-value ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF044ZFD, ENCFF494UKO, ENCFF748XLG, ENCFF823WOO 740693159 ENCODE Processing Pipeline 372f64c6eb484b5683c931ce4aee631d https://www.encodeproject.org/files/ENCFF372IBM/@@download/ENCFF372IBM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF671MKU bigWig fold change over control ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF748XLG, ENCFF823WOO 521408615 ENCODE Processing Pipeline 3f28bdaa215630205e4774e36092a10d https://www.encodeproject.org/files/ENCFF671MKU/@@download/ENCFF671MKU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF665VJL bigWig fold change over control ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF044ZFD, ENCFF494UKO, ENCFF823WOO 498166750 ENCODE Processing Pipeline ade97ce51ed0c3cc03784a87a2836bc9 https://www.encodeproject.org/files/ENCFF665VJL/@@download/ENCFF665VJL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF329BBV bigWig fold change over control ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF044ZFD, ENCFF494UKO, ENCFF748XLG, ENCFF823WOO 858350755 ENCODE Processing Pipeline 723df72c728af3648d94f3662612624f https://www.encodeproject.org/files/ENCFF329BBV/@@download/ENCFF329BBV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF507CJR bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF748XLG, ENCFF823WOO 5576157 ENCODE Processing Pipeline 13078e4f95c9bdf350fb4bfcf249237a https://www.encodeproject.org/files/ENCFF507CJR/@@download/ENCFF507CJR.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF828EON bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF507CJR 11741712 ENCODE Processing Pipeline 773aeed796396a359488052735fa4d42 https://www.encodeproject.org/files/ENCFF828EON/@@download/ENCFF828EON.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF551SAU bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF044ZFD, ENCFF494UKO, ENCFF748XLG, ENCFF823WOO 6323868 ENCODE Processing Pipeline 3f74e3cb1e1d152460ae66babd5c8e36 https://www.encodeproject.org/files/ENCFF551SAU/@@download/ENCFF551SAU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF319CYD bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF551SAU 12062482 ENCODE Processing Pipeline d7cfe1147bb48c453519b49851761a4c https://www.encodeproject.org/files/ENCFF319CYD/@@download/ENCFF319CYD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF676RBI bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF044ZFD, ENCFF494UKO, ENCFF823WOO 5295883 ENCODE Processing Pipeline 4e5ed7eab4f325d85b9ffd5ed8b57314 https://www.encodeproject.org/files/ENCFF676RBI/@@download/ENCFF676RBI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF905PGT bigBed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF676RBI 11649134 ENCODE Processing Pipeline 7d64d8d82fcd7fbd5d9e1e9bf8c902a3 https://www.encodeproject.org/files/ENCFF905PGT/@@download/ENCFF905PGT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF664TXD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF351VGZ 1450900 ENCODE Processing Pipeline 5bd5bbcfe3cfccbc47af7b82953e320b https://www.encodeproject.org/files/ENCFF664TXD/@@download/ENCFF664TXD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF351VGZ bed narrowPeak optimal idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF507CJR, ENCFF551SAU, ENCFF676RBI 823877 ENCODE Processing Pipeline 4a29c6bb5b30494dff406b22892411bc https://www.encodeproject.org/files/ENCFF351VGZ/@@download/ENCFF351VGZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF046FNS bed narrowPeak conservative idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF507CJR, ENCFF551SAU, ENCFF676RBI 775323 ENCODE Processing Pipeline de4f25fb3472eaf9653675b6c8259d3d https://www.encodeproject.org/files/ENCFF046FNS/@@download/ENCFF046FNS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF056KRS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF046FNS 1387386 ENCODE Processing Pipeline 5bdcaf18bd8fcfa9a366e7055ecd8a6e https://www.encodeproject.org/files/ENCFF056KRS/@@download/ENCFF056KRS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HGN bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGY 449451470 John Stamatoyannopoulos, UW dd97a103cc6ba5e3ed3b9fbe33c88517 https://www.encodeproject.org/files/ENCFF001HGN/@@download/ENCFF001HGN.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGO bigBed broadPeak hotspots ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPB 3457839 John Stamatoyannopoulos, UW 70fdb3d709daa3c81afb4d84dc52b9de https://www.encodeproject.org/files/ENCFF001HGO/@@download/ENCFF001HGO.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGP bigBed broadPeak hotspots ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPC 4237560 John Stamatoyannopoulos, UW a74175519599839c0b67ccac739e40f6 https://www.encodeproject.org/files/ENCFF001HGP/@@download/ENCFF001HGP.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGQ bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPD 980783 John Stamatoyannopoulos, UW 2293ab4cdee85ba57f7da34c814cfd8c https://www.encodeproject.org/files/ENCFF001HGQ/@@download/ENCFF001HGQ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGR bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPE 1061232 John Stamatoyannopoulos, UW 05f08b354225cc29e723a927ef988b34 https://www.encodeproject.org/files/ENCFF001HGR/@@download/ENCFF001HGR.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGS bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHG 510694004 John Stamatoyannopoulos, UW 163c004e009b3d957c136d60cc5bf20a https://www.encodeproject.org/files/ENCFF001HGS/@@download/ENCFF001HGS.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGT bigWig raw signal ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGN 69832455 John Stamatoyannopoulos, UW 72fac14da0b51ff1595d75810485cef7 https://www.encodeproject.org/files/ENCFF001HGT/@@download/ENCFF001HGT.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGU bigWig raw signal ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HGS 104115897 John Stamatoyannopoulos, UW 0fa325c6aa8a0516fe987ac820fecbef https://www.encodeproject.org/files/ENCFF001HGU/@@download/ENCFF001HGU.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGY fastq reads ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 578123735 John Stamatoyannopoulos, UW fda6754c81889c50103a6ae7abec4701 https://www.encodeproject.org/files/ENCFF001HGY/@@download/ENCFF001HGY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HHJ/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HHG fastq reads ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 604804963 John Stamatoyannopoulos, UW 13bfdaa24162078355cec4dee4c30212 https://www.encodeproject.org/files/ENCFF001HHG/@@download/ENCFF001HHG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HHJ/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001XPB bed broadPeak hotspots ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGN 2456179 John Stamatoyannopoulos, UW 2d18efc6db09f7f42236c7bf83db7997 https://www.encodeproject.org/files/ENCFF001XPB/@@download/ENCFF001XPB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001XPC bed broadPeak hotspots ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HGS 2246959 John Stamatoyannopoulos, UW 011058d93c50609264128891f0a234f2 https://www.encodeproject.org/files/ENCFF001XPC/@@download/ENCFF001XPC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001XPD bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGN 685062 John Stamatoyannopoulos, UW ff0f6bb5b4c9747546ac480a8d194136 https://www.encodeproject.org/files/ENCFF001XPD/@@download/ENCFF001XPD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001XPE bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HGS 748948 John Stamatoyannopoulos, UW f1a2ff887e4b39e4ce138baf528eb617 https://www.encodeproject.org/files/ENCFF001XPE/@@download/ENCFF001XPE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF002DCK bed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HGN, ENCFF001HGS 728006 ENCODE Consortium Analysis Working Group daec8fe2e58bc51274a177715c9898b6 https://www.encodeproject.org/files/ENCFF002DCK/@@download/ENCFF002DCK.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF418VRX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCK 1304555 ENCODE Consortium 13e0ef40a4b33e879c8b0ed0975b0c69 https://www.encodeproject.org/files/ENCFF418VRX/@@download/ENCFF418VRX.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF662NUJ bam unfiltered alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HGY, ENCFF643CGH 618665218 ENCODE Processing Pipeline cd7816690a22eeb6fb290b00766eff97 https://www.encodeproject.org/files/ENCFF662NUJ/@@download/ENCFF662NUJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF664MCF bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HGY, ENCFF643CGH 254590300 ENCODE Processing Pipeline 4ea418ff2e331ecb470097c52f9e82ef https://www.encodeproject.org/files/ENCFF664MCF/@@download/ENCFF664MCF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF567AIN bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHG, ENCFF643CGH 453482025 ENCODE Processing Pipeline f8c1f06adebff3811d750a78778403d9 https://www.encodeproject.org/files/ENCFF567AIN/@@download/ENCFF567AIN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF052TOP bam unfiltered alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHG, ENCFF643CGH 692926635 ENCODE Processing Pipeline 737c1aead9b26598a4a46428c4a49d86 https://www.encodeproject.org/files/ENCFF052TOP/@@download/ENCFF052TOP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF044UKM bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HGY, ENCFF807MUK 254403739 ENCODE Processing Pipeline 5dc16db53ae69247c25d085e54313b4b https://www.encodeproject.org/files/ENCFF044UKM/@@download/ENCFF044UKM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF362GQT bam unfiltered alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HGY, ENCFF807MUK 616894491 ENCODE Processing Pipeline b68525776eb49b8f5dca28f0d5efce7f https://www.encodeproject.org/files/ENCFF362GQT/@@download/ENCFF362GQT.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF035XEM bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHG, ENCFF807MUK 453164893 ENCODE Processing Pipeline d95c2d9b01428b4c1b963f6cec172139 https://www.encodeproject.org/files/ENCFF035XEM/@@download/ENCFF035XEM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF404FEQ bam unfiltered alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHG, ENCFF807MUK 691168047 ENCODE Processing Pipeline c0089e42118e3b4fdddfa4a30b04a8a7 https://www.encodeproject.org/files/ENCFF404FEQ/@@download/ENCFF404FEQ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF740YHM bigWig signal p-value ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412FKY, ENCFF664MCF 273425415 ENCODE Processing Pipeline a1b28eaae3a28bfa271c6f5da105afab https://www.encodeproject.org/files/ENCFF740YHM/@@download/ENCFF740YHM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF860QJO bigWig signal p-value ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412FKY, ENCFF567AIN, ENCFF664MCF 299214266 ENCODE Processing Pipeline 91cb8e03db4c260f0339f3ad6242f2aa https://www.encodeproject.org/files/ENCFF860QJO/@@download/ENCFF860QJO.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF450GZV bigWig signal p-value ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412FKY, ENCFF567AIN 288512986 ENCODE Processing Pipeline 4eef1ede997286a6ffb1ba4300829047 https://www.encodeproject.org/files/ENCFF450GZV/@@download/ENCFF450GZV.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF091VYB bigWig fold change over control ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412FKY, ENCFF664MCF 99628305 ENCODE Processing Pipeline 316c1d4ea0497bdab326baa0608297a9 https://www.encodeproject.org/files/ENCFF091VYB/@@download/ENCFF091VYB.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF354TSL bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412FKY, ENCFF567AIN 3019375 ENCODE Processing Pipeline 6c09779f81837944317faf035842d49e https://www.encodeproject.org/files/ENCFF354TSL/@@download/ENCFF354TSL.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF086QBD bigWig fold change over control ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412FKY, ENCFF567AIN, ENCFF664MCF 243562536 ENCODE Processing Pipeline 498c89b57b31973d1cbf5a482ff40f8a https://www.encodeproject.org/files/ENCFF086QBD/@@download/ENCFF086QBD.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF765UCT bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF412FKY, ENCFF664MCF 2224988 ENCODE Processing Pipeline ca5f87a3a58c9cc39d624a13cea262dd https://www.encodeproject.org/files/ENCFF765UCT/@@download/ENCFF765UCT.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF002ZPW bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF412FKY, ENCFF567AIN, ENCFF664MCF 4324079 ENCODE Processing Pipeline 7f0b391f75b6408e2c1d76879ec29a2f https://www.encodeproject.org/files/ENCFF002ZPW/@@download/ENCFF002ZPW.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF081TNC bigWig fold change over control ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412FKY, ENCFF567AIN 167509974 ENCODE Processing Pipeline a0b6973e6e9477bcce6169de5da7ac84 https://www.encodeproject.org/files/ENCFF081TNC/@@download/ENCFF081TNC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF130QWC bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF765UCT 4634721 ENCODE Processing Pipeline 10ad31f97e161d9544444501d8cbf7ad https://www.encodeproject.org/files/ENCFF130QWC/@@download/ENCFF130QWC.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF592YAO bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002ZPW 10356277 ENCODE Processing Pipeline bc03ccfdcd81a224b1acb750d930b651 https://www.encodeproject.org/files/ENCFF592YAO/@@download/ENCFF592YAO.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF834WWA bed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002ZPW, ENCFF354TSL, ENCFF419RSJ, ENCFF765UCT 647525 ENCODE Processing Pipeline 246e2f7db34a9c4dab572d230d1af2bd https://www.encodeproject.org/files/ENCFF834WWA/@@download/ENCFF834WWA.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF340QJY bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF354TSL 6213136 ENCODE Processing Pipeline 0347c171b90821d7de7ff9e5c9fc6e5a https://www.encodeproject.org/files/ENCFF340QJY/@@download/ENCFF340QJY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF522MKO bed narrowPeak conservative idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002ZPW, ENCFF354TSL, ENCFF419RSJ, ENCFF765UCT 626481 ENCODE Processing Pipeline f534310f699e6e98412e28c5ed542c20 https://www.encodeproject.org/files/ENCFF522MKO/@@download/ENCFF522MKO.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF784DSE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF834WWA 1197096 ENCODE Processing Pipeline d023d66722b6883da19e3a06dcd63f4b https://www.encodeproject.org/files/ENCFF784DSE/@@download/ENCFF784DSE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF866QLJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF522MKO 1164964 ENCODE Processing Pipeline 5cbb5dd4793a8f062fce97ef6c4c98d1 https://www.encodeproject.org/files/ENCFF866QLJ/@@download/ENCFF866QLJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF822LOX bigWig fold change over control ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035XEM, ENCFF331ASK 165838977 ENCODE Processing Pipeline a0fb00c727b858dda0da61542b7ff40d https://www.encodeproject.org/files/ENCFF822LOX/@@download/ENCFF822LOX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF029SEY bigWig signal p-value ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035XEM, ENCFF331ASK 320251250 ENCODE Processing Pipeline ed942f8acc0aaf5d615e70d6ec5302df https://www.encodeproject.org/files/ENCFF029SEY/@@download/ENCFF029SEY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF825SHM bigWig fold change over control ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF035XEM, ENCFF044UKM, ENCFF331ASK 243388276 ENCODE Processing Pipeline 2a5aa4d057cfa9d0c336dab18df39c14 https://www.encodeproject.org/files/ENCFF825SHM/@@download/ENCFF825SHM.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF074NUI bigWig signal p-value ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF035XEM, ENCFF044UKM, ENCFF331ASK 299078891 ENCODE Processing Pipeline 5fb9c54849f22ebd27f91873300556a1 https://www.encodeproject.org/files/ENCFF074NUI/@@download/ENCFF074NUI.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF990GJT bigWig signal p-value ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF044UKM, ENCFF331ASK 228666130 ENCODE Processing Pipeline f661acade43ab7c30fc4067d30eb5ac1 https://www.encodeproject.org/files/ENCFF990GJT/@@download/ENCFF990GJT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF833FVG bigWig fold change over control ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF044UKM, ENCFF331ASK 98064991 ENCODE Processing Pipeline 7e57ada07923ebf42d2ed8f5e3460c63 https://www.encodeproject.org/files/ENCFF833FVG/@@download/ENCFF833FVG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF653LVL bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF035XEM, ENCFF044UKM, ENCFF331ASK 4319099 ENCODE Processing Pipeline e1b0119d11cc73776f554199a9414e9d https://www.encodeproject.org/files/ENCFF653LVL/@@download/ENCFF653LVL.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF130EGP bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF961AGO 6272644 ENCODE Processing Pipeline 4b0039a461bceb6c36871e3885869dd2 https://www.encodeproject.org/files/ENCFF130EGP/@@download/ENCFF130EGP.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF727BCM bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF653LVL 10347713 ENCODE Processing Pipeline 87ce8924f00128b28260cd05fe06e178 https://www.encodeproject.org/files/ENCFF727BCM/@@download/ENCFF727BCM.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF974DIF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF446MKT 1190226 ENCODE Processing Pipeline 1a97b4918db3119914cf871e4b4b8cd4 https://www.encodeproject.org/files/ENCFF974DIF/@@download/ENCFF974DIF.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF445XBY bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF044UKM, ENCFF331ASK 2213661 ENCODE Processing Pipeline 1adacb413dab633ea043a244efc1c721 https://www.encodeproject.org/files/ENCFF445XBY/@@download/ENCFF445XBY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF961AGO bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035XEM, ENCFF331ASK 3061731 ENCODE Processing Pipeline 1286158fe09ccb9c0f1f96eb46c1328a https://www.encodeproject.org/files/ENCFF961AGO/@@download/ENCFF961AGO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF220ZPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF605AIV 1161055 ENCODE Processing Pipeline 5b1f1095a9f894a885d90906b754f1e2 https://www.encodeproject.org/files/ENCFF220ZPV/@@download/ENCFF220ZPV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF605AIV bed narrowPeak conservative idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF445XBY, ENCFF653LVL, ENCFF961AGO 625728 ENCODE Processing Pipeline 2f7e8f4ac08f01482a55d026d758f6bc https://www.encodeproject.org/files/ENCFF605AIV/@@download/ENCFF605AIV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF718ARM bigBed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF445XBY 4611898 ENCODE Processing Pipeline 57847057e048036efb4e0c20c84dd161 https://www.encodeproject.org/files/ENCFF718ARM/@@download/ENCFF718ARM.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF446MKT bed narrowPeak optimal idr thresholded peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF445XBY, ENCFF653LVL, ENCFF961AGO 645559 ENCODE Processing Pipeline 6e25d6e01e8d314d42456184df9c22c7 https://www.encodeproject.org/files/ENCFF446MKT/@@download/ENCFF446MKT.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF000OED bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OEQ 892226157 Richard Myers, HAIB aeada3abce8cc57c075fb31069080ca0 https://www.encodeproject.org/files/ENCFF000OED/@@download/ENCFF000OED.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000OEE bigBed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYW 171687 Richard Myers, HAIB 456fd498a4b20e093d89b62441e2947d https://www.encodeproject.org/files/ENCFF000OEE/@@download/ENCFF000OEE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000OEF bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEP 819155193 Richard Myers, HAIB 119f2cf5aec82dbe306c1b609b6d77a2 https://www.encodeproject.org/files/ENCFF000OEF/@@download/ENCFF000OEF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000OEG bigBed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYX 281118 Richard Myers, HAIB bd3c29a2485e1ec120eeb68e320e53b7 https://www.encodeproject.org/files/ENCFF000OEG/@@download/ENCFF000OEG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000OEI bigWig raw signal ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 22559761 Richard Myers, HAIB a28ec90d8829c39f3b9103b44922db7f https://www.encodeproject.org/files/ENCFF000OEI/@@download/ENCFF000OEI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF000OEK bigWig raw signal ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 22696639 Richard Myers, HAIB 17b526ddaf54334e80c0871d59ae8936 https://www.encodeproject.org/files/ENCFF000OEK/@@download/ENCFF000OEK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF000OEP fastq reads ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1123721883 Richard Myers, HAIB aa75c9e8271ce2b71c2943ead853c9b9 https://www.encodeproject.org/files/ENCFF000OEP/@@download/ENCFF000OEP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000OEQ fastq reads ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1470421057 Richard Myers, HAIB 949de3ab0f232844e8bd56876ee612fb https://www.encodeproject.org/files/ENCFF000OEQ/@@download/ENCFF000OEQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF001TYW bed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 72035 Richard Myers, HAIB af0609261bb0e9fb86044137c1eb6b74 https://www.encodeproject.org/files/ENCFF001TYW/@@download/ENCFF001TYW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF001TYX bed broadPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 113392 Richard Myers, HAIB 35f89ef2f247fddc9d82ba3728a3da0c https://www.encodeproject.org/files/ENCFF001TYX/@@download/ENCFF001TYX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF002CHU bed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 99895 ENCODE Consortium Analysis Working Group c85b1e6990282d9fb581b19de053c875 https://www.encodeproject.org/files/ENCFF002CHU/@@download/ENCFF002CHU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF254RCY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHU 280402 ENCODE Consortium 8c55a7078cf699ec072484fbbb9c1cdf https://www.encodeproject.org/files/ENCFF254RCY/@@download/ENCFF254RCY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF915GLM bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF643CGH 1312498846 ENCODE Processing Pipeline 8af36b5b7eee492b431ce960f37a85e1 https://www.encodeproject.org/files/ENCFF915GLM/@@download/ENCFF915GLM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF707RRY bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF643CGH 437501433 ENCODE Processing Pipeline df57856fa6dc8dfbea8eb865eb2b5a21 https://www.encodeproject.org/files/ENCFF707RRY/@@download/ENCFF707RRY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF561EJD bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF643CGH 1719361830 ENCODE Processing Pipeline 9d8785b29a06e79d38e44cfe064a69b2 https://www.encodeproject.org/files/ENCFF561EJD/@@download/ENCFF561EJD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF971KJA bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF643CGH 499355998 ENCODE Processing Pipeline 468a98865066dc01460b7b47aa4acaa3 https://www.encodeproject.org/files/ENCFF971KJA/@@download/ENCFF971KJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF549IYK bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF807MUK 1320019291 ENCODE Processing Pipeline db21038167e30341f11a987972172ec1 https://www.encodeproject.org/files/ENCFF549IYK/@@download/ENCFF549IYK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF797IAR bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF807MUK 431191759 ENCODE Processing Pipeline 24203cd7cd0e3c4610b17fba128869fd https://www.encodeproject.org/files/ENCFF797IAR/@@download/ENCFF797IAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF579QFZ bam unfiltered alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF807MUK 1717382506 ENCODE Processing Pipeline 73005236c9d3fb4357f0cf20a4b63aba https://www.encodeproject.org/files/ENCFF579QFZ/@@download/ENCFF579QFZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF060XMV bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF807MUK 492749729 ENCODE Processing Pipeline 88eba33a2c5c1b551d5388e818528b52 https://www.encodeproject.org/files/ENCFF060XMV/@@download/ENCFF060XMV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF511YCS bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF707RRY, ENCFF971KJA 724685886 ENCODE Processing Pipeline ae72d2a66dbcde4b4ccb87f3398f25c9 https://www.encodeproject.org/files/ENCFF511YCS/@@download/ENCFF511YCS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF464JUI bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF707RRY 242483206 ENCODE Processing Pipeline 0a036e550e70470c9019fa8d3a162e34 https://www.encodeproject.org/files/ENCFF464JUI/@@download/ENCFF464JUI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF516YJI bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF707RRY 393998565 ENCODE Processing Pipeline 77e4c1d42fc7a9d6d4274e01a7c9c291 https://www.encodeproject.org/files/ENCFF516YJI/@@download/ENCFF516YJI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF256QZB bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF971KJA 429456870 ENCODE Processing Pipeline 365578239fdd730acfaaf994ffeaff5a https://www.encodeproject.org/files/ENCFF256QZB/@@download/ENCFF256QZB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF916XGL bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF707RRY, ENCFF971KJA 566890076 ENCODE Processing Pipeline 46ac46ea811b297c859bd5e7b8f57c24 https://www.encodeproject.org/files/ENCFF916XGL/@@download/ENCFF916XGL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF968RDY bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF237JOK 11300610 ENCODE Processing Pipeline 698228ca8e52b33d2f930b50e9859422 https://www.encodeproject.org/files/ENCFF968RDY/@@download/ENCFF968RDY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF233IWJ bed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF205XAJ, ENCFF237JOK, ENCFF419RSJ, ENCFF736XQD 74869 ENCODE Processing Pipeline dd9f0df797ed5c259ae7b275edf8ceec https://www.encodeproject.org/files/ENCFF233IWJ/@@download/ENCFF233IWJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF358GKL bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF971KJA 247104097 ENCODE Processing Pipeline 1b93d9300641bf92ac3bfb9b4918aba9 https://www.encodeproject.org/files/ENCFF358GKL/@@download/ENCFF358GKL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF205XAJ bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF707RRY 3559698 ENCODE Processing Pipeline d382d68d0f2e935d0d8f7f0f311131bd https://www.encodeproject.org/files/ENCFF205XAJ/@@download/ENCFF205XAJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF502LCC bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF205XAJ 7799825 ENCODE Processing Pipeline cb5a5f064e5a728c3e01413e377fddef https://www.encodeproject.org/files/ENCFF502LCC/@@download/ENCFF502LCC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF321JQN bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF736XQD 9965829 ENCODE Processing Pipeline 97d098defc0948a7fb14a3d9b1d3c8fd https://www.encodeproject.org/files/ENCFF321JQN/@@download/ENCFF321JQN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF864TFH bed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF205XAJ, ENCFF237JOK, ENCFF419RSJ, ENCFF736XQD 94660 ENCODE Processing Pipeline a797ab5b6a058667349ed9bea424ca00 https://www.encodeproject.org/files/ENCFF864TFH/@@download/ENCFF864TFH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF863SSI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF864TFH 206014 ENCODE Processing Pipeline 2df4d093e1098a36598fcb76b23f13cf https://www.encodeproject.org/files/ENCFF863SSI/@@download/ENCFF863SSI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF736XQD bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF971KJA 3928333 ENCODE Processing Pipeline d6ac3bc8e0be5ffbff266f42f4b65168 https://www.encodeproject.org/files/ENCFF736XQD/@@download/ENCFF736XQD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF237JOK bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF707RRY, ENCFF971KJA 4925732 ENCODE Processing Pipeline 1a78d22d95caa903506d9a554383fda7 https://www.encodeproject.org/files/ENCFF237JOK/@@download/ENCFF237JOK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF813HTT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF233IWJ 174015 ENCODE Processing Pipeline a7611427f90e5efe754e7a2599267ec5 https://www.encodeproject.org/files/ENCFF813HTT/@@download/ENCFF813HTT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF542TXL bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 478834077 ENCODE Processing Pipeline 3f093369c6bf7943f1650c9e8aaeae83 https://www.encodeproject.org/files/ENCFF542TXL/@@download/ENCFF542TXL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF771CBA bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060XMV, ENCFF797IAR, ENCFF837IOW, ENCFF958RTR 4955482 ENCODE Processing Pipeline 4a4b5d86fdcd0b65a5f92c4f76811887 https://www.encodeproject.org/files/ENCFF771CBA/@@download/ENCFF771CBA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF606WUV bed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF491NVT, ENCFF557TKJ, ENCFF771CBA 91820 ENCODE Processing Pipeline f5cc0ab0fab5aa90cb4d068d46f09c70 https://www.encodeproject.org/files/ENCFF606WUV/@@download/ENCFF606WUV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF309MCP bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 363934188 ENCODE Processing Pipeline e13c3f586997417f4834aab9f803f070 https://www.encodeproject.org/files/ENCFF309MCP/@@download/ENCFF309MCP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF697HLB bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 243222130 ENCODE Processing Pipeline 69ddea4049f3315f621b48c715c2a500 https://www.encodeproject.org/files/ENCFF697HLB/@@download/ENCFF697HLB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF119WHC bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 246698015 ENCODE Processing Pipeline 05e92dc7b400eec86f4f425607889c40 https://www.encodeproject.org/files/ENCFF119WHC/@@download/ENCFF119WHC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF491NVT bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 3572166 ENCODE Processing Pipeline d1a1faae16d72d91b8f0943e4b26cd96 https://www.encodeproject.org/files/ENCFF491NVT/@@download/ENCFF491NVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF808EYW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163EZT 190401 ENCODE Processing Pipeline 34aaa695d20c08fe1f2a59fb5ade366c https://www.encodeproject.org/files/ENCFF808EYW/@@download/ENCFF808EYW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF163EZT bed narrowPeak conservative idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF491NVT, ENCFF557TKJ, ENCFF771CBA 70687 ENCODE Processing Pipeline a2b8141773a111b3ac493d81a27a64ce https://www.encodeproject.org/files/ENCFF163EZT/@@download/ENCFF163EZT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF460HSY bigWig signal p-value ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060XMV, ENCFF797IAR, ENCFF837IOW, ENCFF958RTR 741176979 ENCODE Processing Pipeline 8a7bfc62e259d24f8f14c172bcbf24f9 https://www.encodeproject.org/files/ENCFF460HSY/@@download/ENCFF460HSY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF371AOB bigWig fold change over control ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060XMV, ENCFF797IAR, ENCFF837IOW, ENCFF958RTR 567671050 ENCODE Processing Pipeline 291401d9143f4025148eac67526e609e https://www.encodeproject.org/files/ENCFF371AOB/@@download/ENCFF371AOB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF927AFI bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF557TKJ 9967053 ENCODE Processing Pipeline f7fd83e354cfc41d5b1a18fe251cb00d https://www.encodeproject.org/files/ENCFF927AFI/@@download/ENCFF927AFI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF557TKJ bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 3926265 ENCODE Processing Pipeline 050cc271a271744bf736fd530aad10d0 https://www.encodeproject.org/files/ENCFF557TKJ/@@download/ENCFF557TKJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF961ODB bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF491NVT 7831384 ENCODE Processing Pipeline f45633dac72bc3768fc642b7c092f0ad https://www.encodeproject.org/files/ENCFF961ODB/@@download/ENCFF961ODB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF915FJO bigBed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF771CBA 11450497 ENCODE Processing Pipeline 93f305bd3e3b2a730b5e62c2748a7eec https://www.encodeproject.org/files/ENCFF915FJO/@@download/ENCFF915FJO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF753NNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF606WUV 221412 ENCODE Processing Pipeline b1d602b55fb7f599e544a84a058318ed https://www.encodeproject.org/files/ENCFF753NNI/@@download/ENCFF753NNI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF359DZE fastq reads ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 1 100 paired-ended 2 ENCFF970AND 4543295442 Michael Snyder, Stanford d95f5d4bef85553dad42db8e2deb58e1 SRA:SRR6212625 https://www.encodeproject.org/files/ENCFF359DZE/@@download/ENCFF359DZE.fastq.gz Illumina HiSeq 4000 /files/ENCFF998BWE/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF034JLX fastq reads ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 1 100 paired-ended 2 ENCFF766HPI 1802141788 Michael Snyder, Stanford 88a7947751a9348a5a18432be250a1bc https://www.encodeproject.org/files/ENCFF034JLX/@@download/ENCFF034JLX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFI/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF970AND fastq reads ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 1 100 paired-ended 1 ENCFF359DZE 4301320169 Michael Snyder, Stanford f5b45687650806a790e83c477367d38c SRA:SRR6212625 https://www.encodeproject.org/files/ENCFF970AND/@@download/ENCFF970AND.fastq.gz Illumina HiSeq 4000 /files/ENCFF033KKQ/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF766HPI fastq reads ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 1 100 paired-ended 1 ENCFF034JLX 1756252821 Michael Snyder, Stanford 02d32197202854fc72c700fc12d16b79 https://www.encodeproject.org/files/ENCFF766HPI/@@download/ENCFF766HPI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002DTU/ archived mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF950ZQE fastq reads ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 1 100 paired-ended 1 ENCFF645XNK 2793821812 Michael Snyder, Stanford dbccc714f6073b133e7e67ab1cca22f3 SRA:SRR6212624 https://www.encodeproject.org/files/ENCFF950ZQE/@@download/ENCFF950ZQE.fastq.gz Illumina HiSeq 4000 /files/ENCFF311NEY/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF645XNK fastq reads ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 1 100 paired-ended 2 ENCFF950ZQE 3347043355 Michael Snyder, Stanford d2b1353be1b6332e0b5139f87c57ec21 SRA:SRR6212624 https://www.encodeproject.org/files/ENCFF645XNK/@@download/ENCFF645XNK.fastq.gz Illumina HiSeq 4000 /files/ENCFF708ZMD/ released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF823SDQ bam unfiltered alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 100 ENCFF645XNK, ENCFF807MUK, ENCFF950ZQE 5897087993 ENCODE Processing Pipeline 0788122a9a6bfc873cd7918703f29ec0 https://www.encodeproject.org/files/ENCFF823SDQ/@@download/ENCFF823SDQ.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF244TXA bam unfiltered alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 100 ENCFF359DZE, ENCFF807MUK, ENCFF970AND 8221219098 ENCODE Processing Pipeline 913d0717c9c5be677661e5abf5d5ba73 https://www.encodeproject.org/files/ENCFF244TXA/@@download/ENCFF244TXA.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF322TLP bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 100 ENCFF645XNK, ENCFF807MUK, ENCFF950ZQE 4137927770 ENCODE Processing Pipeline 947f677cf24c7a23f532db76da9ba4d7 https://www.encodeproject.org/files/ENCFF322TLP/@@download/ENCFF322TLP.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF682TFP bam unfiltered alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 100 ENCFF643CGH, ENCFF645XNK, ENCFF950ZQE 5906825198 ENCODE Processing Pipeline c7408d43989e2d019b6e9db8f6427d0a https://www.encodeproject.org/files/ENCFF682TFP/@@download/ENCFF682TFP.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF328GEU bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 100 ENCFF359DZE, ENCFF807MUK, ENCFF970AND 4803859558 ENCODE Processing Pipeline 435b0d32288f0eefce54851580dc3136 https://www.encodeproject.org/files/ENCFF328GEU/@@download/ENCFF328GEU.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF117CDU bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 100 ENCFF643CGH, ENCFF645XNK, ENCFF950ZQE 4142815652 ENCODE Processing Pipeline 677c6463ed4cff6c5344d541037dec38 https://www.encodeproject.org/files/ENCFF117CDU/@@download/ENCFF117CDU.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF373GHL bam unfiltered alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 100 ENCFF359DZE, ENCFF643CGH, ENCFF970AND 8223491994 ENCODE Processing Pipeline 8006034eaf92e485495b734948ac5238 https://www.encodeproject.org/files/ENCFF373GHL/@@download/ENCFF373GHL.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF916MHZ bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 100 ENCFF359DZE, ENCFF643CGH, ENCFF970AND 4810597336 ENCODE Processing Pipeline 859eec6e78c40c25f17280eb12a98b42 https://www.encodeproject.org/files/ENCFF916MHZ/@@download/ENCFF916MHZ.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF965DHU bigWig signal p-value ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF117CDU, ENCFF191XYH, ENCFF746SKT 1398258363 ENCODE Processing Pipeline d6a1e5fadb490bdd2d535372d745148c https://www.encodeproject.org/files/ENCFF965DHU/@@download/ENCFF965DHU.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF956AKX bigWig signal p-value ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF117CDU, ENCFF191XYH, ENCFF746SKT, ENCFF916MHZ 2266391960 ENCODE Processing Pipeline bdb717812575a6e4da813788e48098fe https://www.encodeproject.org/files/ENCFF956AKX/@@download/ENCFF956AKX.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF457VYC bigWig signal p-value ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF322TLP, ENCFF447KVS, ENCFF823USR 1521218369 ENCODE Processing Pipeline 1bef4a70b709be65cb63c841f0d4aad6 https://www.encodeproject.org/files/ENCFF457VYC/@@download/ENCFF457VYC.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF932VIY bigWig signal p-value ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF916MHZ 1386716217 ENCODE Processing Pipeline fc4fd534e535316a88022bb0bedc1c36 https://www.encodeproject.org/files/ENCFF932VIY/@@download/ENCFF932VIY.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF453RZG bigWig signal p-value ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF328GEU, ENCFF447KVS, ENCFF823USR 1516898045 ENCODE Processing Pipeline 199836fd4e6ca8d9b86b45c71a8a66bb https://www.encodeproject.org/files/ENCFF453RZG/@@download/ENCFF453RZG.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF314YBM bigWig fold change over control ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF916MHZ 1821609239 ENCODE Processing Pipeline 4b41eceebfe4adba5062c24f451187b7 https://www.encodeproject.org/files/ENCFF314YBM/@@download/ENCFF314YBM.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF498EZK bigWig fold change over control ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF117CDU, ENCFF191XYH, ENCFF746SKT, ENCFF916MHZ 2297298853 ENCODE Processing Pipeline 5baa28d30585fd892dc7427be01d33c1 https://www.encodeproject.org/files/ENCFF498EZK/@@download/ENCFF498EZK.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF984FHB bigWig signal p-value ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF322TLP, ENCFF328GEU, ENCFF447KVS, ENCFF823USR 2276202401 ENCODE Processing Pipeline 99da3d0d6b61960a2232bde6a789a352 https://www.encodeproject.org/files/ENCFF984FHB/@@download/ENCFF984FHB.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF868WVA bigWig fold change over control ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF117CDU, ENCFF191XYH, ENCFF746SKT 1700657590 ENCODE Processing Pipeline dfe4223dd06e288577b6c01734cd1407 https://www.encodeproject.org/files/ENCFF868WVA/@@download/ENCFF868WVA.bigWig GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF234QSN bigWig fold change over control ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF322TLP, ENCFF447KVS, ENCFF823USR 1677919303 ENCODE Processing Pipeline 4e510bb0b238f7e4887b712800c7036b https://www.encodeproject.org/files/ENCFF234QSN/@@download/ENCFF234QSN.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF783MHZ bigWig fold change over control ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF328GEU, ENCFF447KVS, ENCFF823USR 1832336415 ENCODE Processing Pipeline 8fcc7f1a8b2b9d8013f0b55b4d38adb1 https://www.encodeproject.org/files/ENCFF783MHZ/@@download/ENCFF783MHZ.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF862QCJ bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF191XYH, ENCFF746SKT, ENCFF916MHZ 7035790 ENCODE Processing Pipeline 141f0483d06a25b4f38bd99b6519e95c https://www.encodeproject.org/files/ENCFF862QCJ/@@download/ENCFF862QCJ.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF796ZUB bigBed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF111SNO 13262879 ENCODE Processing Pipeline 61d608bbe87a69c5f44d33d8c51afa0b https://www.encodeproject.org/files/ENCFF796ZUB/@@download/ENCFF796ZUB.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF364HLA bigBed narrowPeak conservative idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF058ADL 442809 ENCODE Processing Pipeline aa40e90f1472513eb2749fa08b69abeb https://www.encodeproject.org/files/ENCFF364HLA/@@download/ENCFF364HLA.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF779BND bigBed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF862QCJ 13321252 ENCODE Processing Pipeline d9e0c44a431f00179b7f9ffd796975e8 https://www.encodeproject.org/files/ENCFF779BND/@@download/ENCFF779BND.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF741QYR bigBed narrowPeak optimal idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF306PBX 614917 ENCODE Processing Pipeline 4ee547a98d8ec47dba84f24a9509d6d4 https://www.encodeproject.org/files/ENCFF741QYR/@@download/ENCFF741QYR.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF505JYM bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF117CDU, ENCFF191XYH, ENCFF746SKT 6935710 ENCODE Processing Pipeline c7e31b8d48f32fd8829763516d3e9fd7 https://www.encodeproject.org/files/ENCFF505JYM/@@download/ENCFF505JYM.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF058ADL bed narrowPeak conservative idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF111SNO, ENCFF419RSJ, ENCFF505JYM, ENCFF862QCJ 187762 ENCODE Processing Pipeline 2c692b1cd35ca6d2581a850235b6b165 https://www.encodeproject.org/files/ENCFF058ADL/@@download/ENCFF058ADL.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF932GYE bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF328GEU, ENCFF447KVS, ENCFF823USR 7047664 ENCODE Processing Pipeline 8c7259e0d52f3cd48e614d6c15fe1ee1 https://www.encodeproject.org/files/ENCFF932GYE/@@download/ENCFF932GYE.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF643JEJ bigWig fold change over control ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF322TLP, ENCFF328GEU, ENCFF447KVS, ENCFF823USR 2305743102 ENCODE Processing Pipeline d09bc0bd804dc6bcfc81c89fb504b3d7 https://www.encodeproject.org/files/ENCFF643JEJ/@@download/ENCFF643JEJ.bigWig hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF768XES bigBed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF125FFS 13354026 ENCODE Processing Pipeline f62f3563fa06cfba17c369fe8ab2026d https://www.encodeproject.org/files/ENCFF768XES/@@download/ENCFF768XES.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF781VGH bigBed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF932GYE 13317490 ENCODE Processing Pipeline 10a0295d7a4051ee403a991ff67f12fa https://www.encodeproject.org/files/ENCFF781VGH/@@download/ENCFF781VGH.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF111SNO bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF117CDU, ENCFF191XYH, ENCFF746SKT, ENCFF916MHZ 7260826 ENCODE Processing Pipeline 6b951bd664def7759d7bbddda7e7b4a3 https://www.encodeproject.org/files/ENCFF111SNO/@@download/ENCFF111SNO.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF674TMN bigBed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF505JYM 13364734 ENCODE Processing Pipeline d9d953f14a97ba80940b4ba652cea7b9 https://www.encodeproject.org/files/ENCFF674TMN/@@download/ENCFF674TMN.bigBed GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF306PBX bed narrowPeak optimal idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF111SNO, ENCFF419RSJ, ENCFF505JYM, ENCFF862QCJ 288690 ENCODE Processing Pipeline 904b79a5f383a9d475532c43782e425f https://www.encodeproject.org/files/ENCFF306PBX/@@download/ENCFF306PBX.bed.gz GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF125FFS bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF322TLP, ENCFF447KVS, ENCFF823USR 6939064 ENCODE Processing Pipeline 47e2a13ecd1961869ed3310fcfc80d3a https://www.encodeproject.org/files/ENCFF125FFS/@@download/ENCFF125FFS.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF052VEU bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF322TLP, ENCFF328GEU, ENCFF447KVS, ENCFF823USR 7261702 ENCODE Processing Pipeline 71cf1eb0aa2ae7a5e0dcb3471774c3b4 https://www.encodeproject.org/files/ENCFF052VEU/@@download/ENCFF052VEU.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF603NAC bigBed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF052VEU 13250631 ENCODE Processing Pipeline c228704638d5ae38f74443787f2483eb https://www.encodeproject.org/files/ENCFF603NAC/@@download/ENCFF603NAC.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF212JMM bed narrowPeak conservative idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF001TDO, ENCFF052VEU, ENCFF125FFS, ENCFF932GYE 188326 ENCODE Processing Pipeline 4cb348693bd09e2b6c4874753f6b153b https://www.encodeproject.org/files/ENCFF212JMM/@@download/ENCFF212JMM.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF854CXA bed narrowPeak optimal idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF001TDO, ENCFF052VEU, ENCFF125FFS, ENCFF932GYE 286701 ENCODE Processing Pipeline 602f9d96c82a8dcb90a1a8f51a83399d https://www.encodeproject.org/files/ENCFF854CXA/@@download/ENCFF854CXA.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF067SEX bigBed narrowPeak optimal idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF854CXA 608095 ENCODE Processing Pipeline 3ef7325ac7236ae49a190c9fec8397f1 https://www.encodeproject.org/files/ENCFF067SEX/@@download/ENCFF067SEX.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF700FGG bigBed narrowPeak conservative idr thresholded peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1, 2 ENCFF212JMM 441704 ENCODE Processing Pipeline afe50c979804b6a3462064922acfcdcf https://www.encodeproject.org/files/ENCFF700FGG/@@download/ENCFF700FGG.bigBed hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF000OWM bam alignments ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OWZ 1359576465 Richard Myers, HAIB 58c5237db477f98ece3ab35285443e9f https://www.encodeproject.org/files/ENCFF000OWM/@@download/ENCFF000OWM.bam hg19 released biological replicates with identical biosample ENCFF000OWN bigBed broadPeak peaks ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDE 555498 Richard Myers, HAIB 0c96d876def0648490f0923e5eb2deb9 https://www.encodeproject.org/files/ENCFF000OWN/@@download/ENCFF000OWN.bigBed hg19 released biological replicates with identical biosample ENCFF000OWP bigBed broadPeak peaks ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDF 427296 Richard Myers, HAIB 4f93e43deac8bc704820a29f130a0d36 https://www.encodeproject.org/files/ENCFF000OWP/@@download/ENCFF000OWP.bigBed hg19 released biological replicates with identical biosample ENCFF000OWQ bam alignments ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OXC 2097212135 Richard Myers, HAIB d5de509c457da3e047933ea13202d6d2 https://www.encodeproject.org/files/ENCFF000OWQ/@@download/ENCFF000OWQ.bam hg19 released biological replicates with identical biosample ENCFF000OWR bigWig raw signal ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 268878406 Richard Myers, HAIB 8a89d11c4f4f6599dcbf9baa77bae824 https://www.encodeproject.org/files/ENCFF000OWR/@@download/ENCFF000OWR.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000OWT bigWig raw signal ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 144810132 Richard Myers, HAIB 225377b091c4a67881006c036624b5a1 https://www.encodeproject.org/files/ENCFF000OWT/@@download/ENCFF000OWT.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000OWZ fastq reads ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1372571399 Richard Myers, HAIB 495d2464408cf6efc691a5162e0e69e0 https://www.encodeproject.org/files/ENCFF000OWZ/@@download/ENCFF000OWZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OXQ/ released biological replicates with identical biosample ENCFF000OXC fastq reads ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2173923965 Richard Myers, HAIB a44d0d73ea8620c918cb1190ce447164 https://www.encodeproject.org/files/ENCFF000OXC/@@download/ENCFF000OXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OXP/ released biological replicates with identical biosample ENCFF001UDE bed broadPeak peaks ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 385571 Richard Myers, HAIB fc9778b347a022720e542090b68f0dcc https://www.encodeproject.org/files/ENCFF001UDE/@@download/ENCFF001UDE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UDF bed broadPeak peaks ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 208850 Richard Myers, HAIB 8b29ef88a7db7a8995ee9d99d711c189 https://www.encodeproject.org/files/ENCFF001UDF/@@download/ENCFF001UDF.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000BHG bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000BHT 1300649718 Bradley Bernstein, Broad 6691e6cd709cd27a18f48a39575e0691 https://www.encodeproject.org/files/ENCFF000BHG/@@download/ENCFF000BHG.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms ENCFF000BHH bigBed broadPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SWT 3063561 Bradley Bernstein, Broad 515fc8bd02e40f821f711bdbb5f6ddd6 https://www.encodeproject.org/files/ENCFF000BHH/@@download/ENCFF000BHH.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms ENCFF000BHJ bigWig signal ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 511354168 Bradley Bernstein, Broad 25ac7ecb02b113ed52fde78afcbf9ceb https://www.encodeproject.org/files/ENCFF000BHJ/@@download/ENCFF000BHJ.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from ENCFF000BHK bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000BHU 1544009991 Bradley Bernstein, Broad ea982cb6c85bd472ba3fc48a7b6a63be https://www.encodeproject.org/files/ENCFF000BHK/@@download/ENCFF000BHK.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms ENCFF000BHT fastq reads ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1267324045 Bradley Bernstein, Broad 293d415846ea44d3a12e12c262f1b388 https://www.encodeproject.org/files/ENCFF000BHT/@@download/ENCFF000BHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BHE/, /files/ENCFF556RIX/, /files/ENCFF749GHL/, /files/ENCFF788YKS/, /files/ENCFF913IHA/ released low read length, borderline replicate concordance, inconsistent platforms ENCFF000BHU fastq reads ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1716833302 Bradley Bernstein, Broad 33d838dd3db0d5e2e3fbe0e3a94f7006 https://www.encodeproject.org/files/ENCFF000BHU/@@download/ENCFF000BHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BHF/, /files/ENCFF152UJF/, /files/ENCFF702WJD/ released low read length, borderline replicate concordance, inconsistent platforms ENCFF001SWT bed broadPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1641923 Bradley Bernstein, Broad 51afdec5872f49f7fa4c568c409e324b https://www.encodeproject.org/files/ENCFF001SWT/@@download/ENCFF001SWT.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from ENCFF002CEC bed narrowPeak optimal idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 114062 ENCODE Consortium Analysis Working Group 9ad516bd083ae2f12703ee84eb62c55d https://www.encodeproject.org/files/ENCFF002CEC/@@download/ENCFF002CEC.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from ENCFF163CZS bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEC 334832 ENCODE Consortium 3f2628c31fd3a9871a7c26384d38b0ea https://www.encodeproject.org/files/ENCFF163CZS/@@download/ENCFF163CZS.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms ENCFF885JZK bam unfiltered alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BHT, ENCFF643CGH 1623358522 ENCODE Processing Pipeline 8a2a1bc96aa2a2a26d821a6c09389181 https://www.encodeproject.org/files/ENCFF885JZK/@@download/ENCFF885JZK.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF438BFX bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BHT, ENCFF643CGH 1095979780 ENCODE Processing Pipeline 5b88d1095c40c40e129e47df5ffe2fdf https://www.encodeproject.org/files/ENCFF438BFX/@@download/ENCFF438BFX.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF152BLN bam unfiltered alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BHU, ENCFF643CGH 2148346739 ENCODE Processing Pipeline 8c63b119d736e9b509581052f3c933c2 https://www.encodeproject.org/files/ENCFF152BLN/@@download/ENCFF152BLN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF838WWO bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BHU, ENCFF643CGH 1291753023 ENCODE Processing Pipeline 7ab9e084160bc6ac7f40063d73b25afa https://www.encodeproject.org/files/ENCFF838WWO/@@download/ENCFF838WWO.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF659WMR bam unfiltered alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BHT, ENCFF807MUK 1610484376 ENCODE Processing Pipeline 21a304b1cc2d09099e0c2ee3514f9410 https://www.encodeproject.org/files/ENCFF659WMR/@@download/ENCFF659WMR.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF355LBA bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BHT, ENCFF807MUK 1096167702 ENCODE Processing Pipeline 9f50e847d8666f5a29943310b3bc4a51 https://www.encodeproject.org/files/ENCFF355LBA/@@download/ENCFF355LBA.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF954WLA bam unfiltered alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BHU, ENCFF807MUK 2132279340 ENCODE Processing Pipeline 6838aaea87260dfc39cacbda7218f8a0 https://www.encodeproject.org/files/ENCFF954WLA/@@download/ENCFF954WLA.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF840LUZ bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BHU, ENCFF807MUK 1292013768 ENCODE Processing Pipeline e3988f6a1dd95c86fde6f066ac47a082 https://www.encodeproject.org/files/ENCFF840LUZ/@@download/ENCFF840LUZ.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF357WXQ bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF062WDT, ENCFF355LBA, ENCFF903ATW 6636227 ENCODE Processing Pipeline 47d1c1776d43491eead30f8b588a0318 https://www.encodeproject.org/files/ENCFF357WXQ/@@download/ENCFF357WXQ.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF219SGN bigWig signal p-value ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF062WDT, ENCFF355LBA, ENCFF903ATW 886018424 ENCODE Processing Pipeline 914ed7e9adbd62b70b3c0aac8413d60a https://www.encodeproject.org/files/ENCFF219SGN/@@download/ENCFF219SGN.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF372ZVJ bigWig fold change over control ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF062WDT, ENCFF355LBA, ENCFF903ATW 743605245 ENCODE Processing Pipeline eda8519fad3a15b6c5b98c1a660d89af https://www.encodeproject.org/files/ENCFF372ZVJ/@@download/ENCFF372ZVJ.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF171XWK bigWig fold change over control ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF062WDT, ENCFF840LUZ, ENCFF903ATW 817957372 ENCODE Processing Pipeline d581d3a3df644bf58440c0d09d7bf184 https://www.encodeproject.org/files/ENCFF171XWK/@@download/ENCFF171XWK.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF726NUY bigBed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF357WXQ 13088323 ENCODE Processing Pipeline c37108256d924b90136f17b98282297a https://www.encodeproject.org/files/ENCFF726NUY/@@download/ENCFF726NUY.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF025JMO bigBed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF385LJM 13201399 ENCODE Processing Pipeline 3e2f2c75a108f5eb6ab37feff36de8af https://www.encodeproject.org/files/ENCFF025JMO/@@download/ENCFF025JMO.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF177LBB bed narrowPeak conservative idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF015WVN, ENCFF357WXQ, ENCFF385LJM 134988 ENCODE Processing Pipeline 25a38a9a655148f37d6c8c43731fba2e https://www.encodeproject.org/files/ENCFF177LBB/@@download/ENCFF177LBB.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF360MGZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF177LBB 413137 ENCODE Processing Pipeline 61be2de777f77831d3f36ad5eee7eff4 https://www.encodeproject.org/files/ENCFF360MGZ/@@download/ENCFF360MGZ.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF174KWT bigWig signal p-value ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF062WDT, ENCFF840LUZ, ENCFF903ATW 904129330 ENCODE Processing Pipeline 2c46f494f0d7327d37768f9e96da5ca2 https://www.encodeproject.org/files/ENCFF174KWT/@@download/ENCFF174KWT.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF481XZA bigWig signal p-value ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF062WDT, ENCFF355LBA, ENCFF840LUZ, ENCFF903ATW 1098760585 ENCODE Processing Pipeline 580492ffe18bfe40bf15cc5ed4243dca https://www.encodeproject.org/files/ENCFF481XZA/@@download/ENCFF481XZA.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF949CAF bigWig fold change over control ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF062WDT, ENCFF355LBA, ENCFF840LUZ, ENCFF903ATW 1169430051 ENCODE Processing Pipeline eea50c77de3293ad4c54a7559ab820df https://www.encodeproject.org/files/ENCFF949CAF/@@download/ENCFF949CAF.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF015WVN bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF062WDT, ENCFF840LUZ, ENCFF903ATW 6433501 ENCODE Processing Pipeline 79fc95fda12d15573ae2289cdf4d9dbf https://www.encodeproject.org/files/ENCFF015WVN/@@download/ENCFF015WVN.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF902FTY bigBed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF015WVN 13437391 ENCODE Processing Pipeline 557626b00158a2e7b6c5a5eb47d7c6e2 https://www.encodeproject.org/files/ENCFF902FTY/@@download/ENCFF902FTY.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF743FCW bed narrowPeak optimal idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF015WVN, ENCFF357WXQ, ENCFF385LJM 144063 ENCODE Processing Pipeline 3dfb5f076fde87b7896b22f33633d866 https://www.encodeproject.org/files/ENCFF743FCW/@@download/ENCFF743FCW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF385LJM bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF062WDT, ENCFF355LBA, ENCFF840LUZ, ENCFF903ATW 7113926 ENCODE Processing Pipeline 49776f9060878e788fc90b6202b2a332 https://www.encodeproject.org/files/ENCFF385LJM/@@download/ENCFF385LJM.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF448YLM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF743FCW 432805 ENCODE Processing Pipeline 1cb533212c9f0bde4d54ef9f37f12600 https://www.encodeproject.org/files/ENCFF448YLM/@@download/ENCFF448YLM.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF524UNK bigWig signal p-value ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF801RTD, ENCFF813ZYQ, ENCFF838WWO 1046691529 ENCODE Processing Pipeline 1d1231168d86a37425257fc4ea2a0ecf https://www.encodeproject.org/files/ENCFF524UNK/@@download/ENCFF524UNK.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF062KTR bigWig fold change over control ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF438BFX, ENCFF801RTD, ENCFF813ZYQ, ENCFF838WWO 1162661122 ENCODE Processing Pipeline 0773a41076f63f2134b7fd4bf0f300bf https://www.encodeproject.org/files/ENCFF062KTR/@@download/ENCFF062KTR.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF324RIT bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF438BFX, ENCFF801RTD, ENCFF813ZYQ 6632397 ENCODE Processing Pipeline 04ee24510f6dec7a07be51f5978d1be9 https://www.encodeproject.org/files/ENCFF324RIT/@@download/ENCFF324RIT.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF718WUR bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF633TFF 405563 ENCODE Processing Pipeline 402d90c6a9c386ba2317bdbe253c6e5c https://www.encodeproject.org/files/ENCFF718WUR/@@download/ENCFF718WUR.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF924RAS bigWig signal p-value ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF438BFX, ENCFF801RTD, ENCFF813ZYQ 867336646 ENCODE Processing Pipeline 970b33583dab5eaf33eb17ec56d2f046 https://www.encodeproject.org/files/ENCFF924RAS/@@download/ENCFF924RAS.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF808LVE bigWig fold change over control ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF438BFX, ENCFF801RTD, ENCFF813ZYQ 745560802 ENCODE Processing Pipeline bdce7c74e6d4dd19430e3914484a344d https://www.encodeproject.org/files/ENCFF808LVE/@@download/ENCFF808LVE.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF633TFF bed narrowPeak conservative idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF324RIT, ENCFF419RSJ, ENCFF710QDO, ENCFF856VSR 130160 ENCODE Processing Pipeline 69fe404e1d03499cb04a90539d815a3d https://www.encodeproject.org/files/ENCFF633TFF/@@download/ENCFF633TFF.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF710QDO bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF801RTD, ENCFF813ZYQ, ENCFF838WWO 6397163 ENCODE Processing Pipeline 7e7bff2ab68070224f00dc9c86f8caef https://www.encodeproject.org/files/ENCFF710QDO/@@download/ENCFF710QDO.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF406TAC bigBed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF324RIT 13090607 ENCODE Processing Pipeline 1416f95561897855f3e8a612be10e6fa https://www.encodeproject.org/files/ENCFF406TAC/@@download/ENCFF406TAC.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF046PCQ bigBed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF856VSR 13196891 ENCODE Processing Pipeline 90347579da7cf35678aa6a9167e12378 https://www.encodeproject.org/files/ENCFF046PCQ/@@download/ENCFF046PCQ.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF924DHK bigWig signal p-value ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF438BFX, ENCFF801RTD, ENCFF813ZYQ, ENCFF838WWO 1060428240 ENCODE Processing Pipeline 2d2296a85eb7f06314de505306fae6c5 https://www.encodeproject.org/files/ENCFF924DHK/@@download/ENCFF924DHK.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF542MVH bigWig fold change over control ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF801RTD, ENCFF813ZYQ, ENCFF838WWO 813436842 ENCODE Processing Pipeline 551db6e0b61b3cab7be91325adef4eeb https://www.encodeproject.org/files/ENCFF542MVH/@@download/ENCFF542MVH.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF856VSR bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF438BFX, ENCFF801RTD, ENCFF813ZYQ, ENCFF838WWO 7100061 ENCODE Processing Pipeline 1cc5d41355a21de16f135b6932dec62c https://www.encodeproject.org/files/ENCFF856VSR/@@download/ENCFF856VSR.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF068TZH bigBed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF710QDO 13404311 ENCODE Processing Pipeline a28b799cb8321cea0b307c91b5673b7a https://www.encodeproject.org/files/ENCFF068TZH/@@download/ENCFF068TZH.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF420KMT bed narrowPeak optimal idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF324RIT, ENCFF419RSJ, ENCFF710QDO, ENCFF856VSR 142189 ENCODE Processing Pipeline aa658d845862364562884e65c078e067 https://www.encodeproject.org/files/ENCFF420KMT/@@download/ENCFF420KMT.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF706CBH bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF420KMT 431703 ENCODE Processing Pipeline 36b6eda7254eda8f9c38f7487689c363 https://www.encodeproject.org/files/ENCFF706CBH/@@download/ENCFF706CBH.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF782RSZ fastq reads ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1440172185 Richard Myers, HAIB c0188dacbb0d2f6012f9a805c463900c SRA:SRR5331304 https://www.encodeproject.org/files/ENCFF782RSZ/@@download/ENCFF782RSZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF460NRJ fastq reads ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2495054724 Richard Myers, HAIB 567edef1e5808ec2c955b681283bdc22 SRA:SRR5331303 https://www.encodeproject.org/files/ENCFF460NRJ/@@download/ENCFF460NRJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF280VGH bam unfiltered alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF782RSZ 1680644825 ENCODE Processing Pipeline 81606c9bbb305380df546c773dc22ff2 https://www.encodeproject.org/files/ENCFF280VGH/@@download/ENCFF280VGH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF032LGX bam unfiltered alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF782RSZ, ENCFF807MUK 1676734199 ENCODE Processing Pipeline 91340f75f198901c24293112d6b260fb https://www.encodeproject.org/files/ENCFF032LGX/@@download/ENCFF032LGX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF380VMK bam unfiltered alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF460NRJ, ENCFF643CGH 2788374791 ENCODE Processing Pipeline ee774a93a0216fe4f8fc7677a257151a https://www.encodeproject.org/files/ENCFF380VMK/@@download/ENCFF380VMK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF246NWJ bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF782RSZ 1240459382 ENCODE Processing Pipeline ba61233c4964bd11d5a2b777c802df62 https://www.encodeproject.org/files/ENCFF246NWJ/@@download/ENCFF246NWJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF305NTO bam unfiltered alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF460NRJ, ENCFF807MUK 2782436968 ENCODE Processing Pipeline 4ca4ea5da827c8133a774561a3e8748f https://www.encodeproject.org/files/ENCFF305NTO/@@download/ENCFF305NTO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF697CIN bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF782RSZ, ENCFF807MUK 1239739508 ENCODE Processing Pipeline 9a89a3c0fbb1e4118ef234ad4f1f9892 https://www.encodeproject.org/files/ENCFF697CIN/@@download/ENCFF697CIN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF999YSD bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF460NRJ, ENCFF643CGH 1978387844 ENCODE Processing Pipeline dfbb339b221bb10bbb6afaaf82338dc8 https://www.encodeproject.org/files/ENCFF999YSD/@@download/ENCFF999YSD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF829CNY bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF460NRJ, ENCFF807MUK 1977215143 ENCODE Processing Pipeline 391d2eead985a48fd7383f370cea93aa https://www.encodeproject.org/files/ENCFF829CNY/@@download/ENCFF829CNY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF147UNI bigWig signal p-value ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF999YSD 661321293 ENCODE Processing Pipeline c71e587522316f912761ee270ff8913a https://www.encodeproject.org/files/ENCFF147UNI/@@download/ENCFF147UNI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894IQI bigWig signal p-value ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF246NWJ 518899670 ENCODE Processing Pipeline 55ca1d49eaf9573f2421409c41ddc386 https://www.encodeproject.org/files/ENCFF894IQI/@@download/ENCFF894IQI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530UGB bigWig signal p-value ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF246NWJ, ENCFF999YSD 631016718 ENCODE Processing Pipeline 689f240328aaa5f5f666364f110596fc https://www.encodeproject.org/files/ENCFF530UGB/@@download/ENCFF530UGB.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF854VYF bigWig fold change over control ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF999YSD 682708965 ENCODE Processing Pipeline 1ee8f9ef3a698d9334996048718ebbb9 https://www.encodeproject.org/files/ENCFF854VYF/@@download/ENCFF854VYF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF672QFZ bigWig fold change over control ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF246NWJ 497149595 ENCODE Processing Pipeline 04f52f48710dff9b506827a2553fce7b https://www.encodeproject.org/files/ENCFF672QFZ/@@download/ENCFF672QFZ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF559CVP bigWig fold change over control ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF246NWJ, ENCFF999YSD 975319828 ENCODE Processing Pipeline f20a2d5ede247d61d241d1dfed4da158 https://www.encodeproject.org/files/ENCFF559CVP/@@download/ENCFF559CVP.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF659DPA bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF999YSD 6233291 ENCODE Processing Pipeline ff10f7e3762f5e557a916667b4dc0812 https://www.encodeproject.org/files/ENCFF659DPA/@@download/ENCFF659DPA.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF093MVU bigBed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF659DPA 13318342 ENCODE Processing Pipeline 367b1193b078de1acab6e4f113846814 https://www.encodeproject.org/files/ENCFF093MVU/@@download/ENCFF093MVU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF120CFE bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF246NWJ 5432027 ENCODE Processing Pipeline 94b4c3dcdfe4a3857b331f00a9c2e00a https://www.encodeproject.org/files/ENCFF120CFE/@@download/ENCFF120CFE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF388FCL bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF246NWJ, ENCFF999YSD 6538637 ENCODE Processing Pipeline 817b3976caa5c2ea3fc1065f261ada90 https://www.encodeproject.org/files/ENCFF388FCL/@@download/ENCFF388FCL.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF629RRK bigBed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF120CFE 11033896 ENCODE Processing Pipeline 305ac6efaa9ccc26a798c5e29175896b https://www.encodeproject.org/files/ENCFF629RRK/@@download/ENCFF629RRK.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF344KII bigBed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF388FCL 13333759 ENCODE Processing Pipeline c3a5234d3cddbec099a0b7a77528ce19 https://www.encodeproject.org/files/ENCFF344KII/@@download/ENCFF344KII.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF045POT bigBed narrowPeak conservative idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF061FMV 1672645 ENCODE Processing Pipeline 26571fe537fce57212295a69fca03d25 https://www.encodeproject.org/files/ENCFF045POT/@@download/ENCFF045POT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF061FMV bed narrowPeak conservative idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF120CFE, ENCFF388FCL, ENCFF419RSJ, ENCFF659DPA 837677 ENCODE Processing Pipeline d4f213a65552c269e80e43cd417be9a0 https://www.encodeproject.org/files/ENCFF061FMV/@@download/ENCFF061FMV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF874PIO bed narrowPeak optimal idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF120CFE, ENCFF388FCL, ENCFF419RSJ, ENCFF659DPA 937769 ENCODE Processing Pipeline e096d2f8aa353c4155dc45af0de569af https://www.encodeproject.org/files/ENCFF874PIO/@@download/ENCFF874PIO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF470YRW bigBed narrowPeak optimal idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF874PIO 1824138 ENCODE Processing Pipeline ccab25d728e2c162b713e8bebffe334b https://www.encodeproject.org/files/ENCFF470YRW/@@download/ENCFF470YRW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF053XWU bigWig signal p-value ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF829CNY 1501552226 ENCODE Processing Pipeline 8a40336075b0dcf0319be6ba22394ecb https://www.encodeproject.org/files/ENCFF053XWU/@@download/ENCFF053XWU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF926HGT bigWig signal p-value ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697CIN 1194030301 ENCODE Processing Pipeline ce723e8fe854f4350a24732750db1f16 https://www.encodeproject.org/files/ENCFF926HGT/@@download/ENCFF926HGT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF872CXX bigWig signal p-value ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF697CIN, ENCFF829CNY 1421047811 ENCODE Processing Pipeline 5ee593864bbd278395235bd5afe6d9ef https://www.encodeproject.org/files/ENCFF872CXX/@@download/ENCFF872CXX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF273YZD bigWig fold change over control ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF829CNY 1222106268 ENCODE Processing Pipeline e66dc16a0e70f7428bcdbe2c5b4fb567 https://www.encodeproject.org/files/ENCFF273YZD/@@download/ENCFF273YZD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530IWU bigWig fold change over control ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697CIN 940574088 ENCODE Processing Pipeline 4b465985a565f8b9c779793d8a56e849 https://www.encodeproject.org/files/ENCFF530IWU/@@download/ENCFF530IWU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF087AEC bigWig fold change over control ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF697CIN, ENCFF829CNY 1613021520 ENCODE Processing Pipeline 3408b902dd42318828c0342dc2a8a264 https://www.encodeproject.org/files/ENCFF087AEC/@@download/ENCFF087AEC.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF611TJW bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF829CNY 6477887 ENCODE Processing Pipeline 226b1cafb0c2332c9b930e60b801ff64 https://www.encodeproject.org/files/ENCFF611TJW/@@download/ENCFF611TJW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF448PNP bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF697CIN, ENCFF829CNY 6818648 ENCODE Processing Pipeline a69c37146be3d80ceb9ab1e73d051f1d https://www.encodeproject.org/files/ENCFF448PNP/@@download/ENCFF448PNP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF381PAX bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697CIN 6106558 ENCODE Processing Pipeline 2cf7ff7e4acbf1baa005d9e485d38bcd https://www.encodeproject.org/files/ENCFF381PAX/@@download/ENCFF381PAX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF432QRU bigBed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF611TJW 13260670 ENCODE Processing Pipeline 63c3c90ce3e70a6d18eaa3ad2a304664 https://www.encodeproject.org/files/ENCFF432QRU/@@download/ENCFF432QRU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF944TTI bigBed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF381PAX 11171075 ENCODE Processing Pipeline 3bac4f46e04707953308fd3c4394fc1e https://www.encodeproject.org/files/ENCFF944TTI/@@download/ENCFF944TTI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF348VTV bigBed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF448PNP 13517606 ENCODE Processing Pipeline 344cb9b8a45c59fc08e87b5ce6566d37 https://www.encodeproject.org/files/ENCFF348VTV/@@download/ENCFF348VTV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF298YHP bigBed narrowPeak conservative idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF791WUN 1385027 ENCODE Processing Pipeline e56388bd740fc1e0c4ea9b48e446154d https://www.encodeproject.org/files/ENCFF298YHP/@@download/ENCFF298YHP.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249CSQ bed narrowPeak optimal idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF381PAX, ENCFF448PNP, ENCFF611TJW 948825 ENCODE Processing Pipeline c7792cdddbdc1d4b7b0a620f2c98b5fa https://www.encodeproject.org/files/ENCFF249CSQ/@@download/ENCFF249CSQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF791WUN bed narrowPeak conservative idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF381PAX, ENCFF448PNP, ENCFF611TJW 858037 ENCODE Processing Pipeline 5a81907dedae9d1b63b350c5e872c7e5 https://www.encodeproject.org/files/ENCFF791WUN/@@download/ENCFF791WUN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF185ICU bigBed narrowPeak optimal idr thresholded peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF249CSQ 1907883 ENCODE Processing Pipeline 1d8ddf8804cccd5252039c535980be7d https://www.encodeproject.org/files/ENCFF185ICU/@@download/ENCFF185ICU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000YHL bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VMG 1882642 Michael Snyder, Stanford a13d0b66597665d654ce20ffe479a966 https://www.encodeproject.org/files/ENCFF000YHL/@@download/ENCFF000YHL.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000YHM fastq reads ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1527172919 Michael Snyder, Stanford 210add1205f5598eefbd36efbb58877d https://www.encodeproject.org/files/ENCFF000YHM/@@download/ENCFF000YHM.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000YHO fastq reads ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1296838499 Michael Snyder, Stanford d67a136a7dda2547eed504f68cfc80a1 https://www.encodeproject.org/files/ENCFF000YHO/@@download/ENCFF000YHO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000YHQ bigWig signal ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 483642273 Michael Snyder, Stanford d30c1b865cf71635045fb6185207924a https://www.encodeproject.org/files/ENCFF000YHQ/@@download/ENCFF000YHQ.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000YHR bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 1 665339499 Michael Snyder, Stanford 2eb88087cb9294a18236b2e0e395b7d9 https://www.encodeproject.org/files/ENCFF000YHR/@@download/ENCFF000YHR.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000YHS bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 1 676034772 Michael Snyder, Stanford 4fb387d99b4bf0e0c39bdc3100c4dfa4 https://www.encodeproject.org/files/ENCFF000YHS/@@download/ENCFF000YHS.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001VMG bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 896817 Michael Snyder, Stanford d20fccbb76459a4b2a02a3814b92bdd7 https://www.encodeproject.org/files/ENCFF001VMG/@@download/ENCFF001VMG.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF578UPA bam unfiltered alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YHM, ENCFF643CGH 1736772173 ENCODE Processing Pipeline 4285ecbd2fcd110c72fb2b4616385703 https://www.encodeproject.org/files/ENCFF578UPA/@@download/ENCFF578UPA.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF482CMU bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YHM, ENCFF643CGH 1209809373 ENCODE Processing Pipeline 9bfbf1d42fbf68593c7a8c7b24a25fe3 https://www.encodeproject.org/files/ENCFF482CMU/@@download/ENCFF482CMU.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF151VAM bam unfiltered alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YHO, ENCFF643CGH 1510389014 ENCODE Processing Pipeline 79ea06119bc3edda667f2355cbbf49a5 https://www.encodeproject.org/files/ENCFF151VAM/@@download/ENCFF151VAM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF662BBY bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YHO, ENCFF643CGH 1026109854 ENCODE Processing Pipeline 265a284d83a61d8edb754e8deba6c35d https://www.encodeproject.org/files/ENCFF662BBY/@@download/ENCFF662BBY.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF072DTZ bam unfiltered alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YHM, ENCFF807MUK 1728561085 ENCODE Processing Pipeline 41a250cb86a235ed221cc7be216fc80f https://www.encodeproject.org/files/ENCFF072DTZ/@@download/ENCFF072DTZ.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF613OTB bam unfiltered alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YHO, ENCFF807MUK 1503215055 ENCODE Processing Pipeline 5b3a1bd221b18522bc8b001404881678 https://www.encodeproject.org/files/ENCFF613OTB/@@download/ENCFF613OTB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF377MEH bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YHO, ENCFF807MUK 1026732870 ENCODE Processing Pipeline 1cfd31e22dde2f2d2c47aac97d302b5a https://www.encodeproject.org/files/ENCFF377MEH/@@download/ENCFF377MEH.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF353HYR bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YHM, ENCFF807MUK 1210457188 ENCODE Processing Pipeline e7e1fd0b4375683b36b5f9d04956a7e4 https://www.encodeproject.org/files/ENCFF353HYR/@@download/ENCFF353HYR.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF320LTI bigWig fold change over control ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF662BBY 483090063 ENCODE Processing Pipeline 9afc317e22b734953f2b2f31809634a8 https://www.encodeproject.org/files/ENCFF320LTI/@@download/ENCFF320LTI.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF688YAV bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF482CMU, ENCFF662BBY 5971527 ENCODE Processing Pipeline 4e8841d5ebff8c4658b72c66bc13cbd2 https://www.encodeproject.org/files/ENCFF688YAV/@@download/ENCFF688YAV.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF334RIS bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF688YAV 13216346 ENCODE Processing Pipeline 48f5d78774e775be8e8f4308ce4cca73 https://www.encodeproject.org/files/ENCFF334RIS/@@download/ENCFF334RIS.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF146BYQ bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF137HNJ 11016812 ENCODE Processing Pipeline 5eec22a721b21900c2ac47c7da3efed6 https://www.encodeproject.org/files/ENCFF146BYQ/@@download/ENCFF146BYQ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF126OJN bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF641LBE 11105200 ENCODE Processing Pipeline 535f62efa9c2a47105216f7c84d7167c https://www.encodeproject.org/files/ENCFF126OJN/@@download/ENCFF126OJN.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF099SET bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF317FDT 260126 ENCODE Processing Pipeline 9d4843c010d2e7d13b12d353430e9ca4 https://www.encodeproject.org/files/ENCFF099SET/@@download/ENCFF099SET.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF556HMX bed narrowPeak optimal idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF137HNJ, ENCFF419RSJ, ENCFF641LBE, ENCFF688YAV 123219 ENCODE Processing Pipeline 153c91356349810df0579535ad132ba6 https://www.encodeproject.org/files/ENCFF556HMX/@@download/ENCFF556HMX.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF142YVY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF556HMX 276378 ENCODE Processing Pipeline 849306954b337f3bc97ae46080224d74 https://www.encodeproject.org/files/ENCFF142YVY/@@download/ENCFF142YVY.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF948MNS bigWig fold change over control ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF482CMU 520545175 ENCODE Processing Pipeline 2151368cabfc12e4963168664c779c34 https://www.encodeproject.org/files/ENCFF948MNS/@@download/ENCFF948MNS.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF952VAW bigWig signal p-value ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF482CMU 550967712 ENCODE Processing Pipeline 672a7ae3932941f8d20b30151406f267 https://www.encodeproject.org/files/ENCFF952VAW/@@download/ENCFF952VAW.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF200ZIM bigWig fold change over control ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF482CMU, ENCFF662BBY 835287723 ENCODE Processing Pipeline ed2e8237be08255c71e29f00d8febd9a https://www.encodeproject.org/files/ENCFF200ZIM/@@download/ENCFF200ZIM.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF165GSP bigWig signal p-value ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF662BBY 511046181 ENCODE Processing Pipeline 96dc014c5e75a9df924ff8505dcc2be5 https://www.encodeproject.org/files/ENCFF165GSP/@@download/ENCFF165GSP.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF721WXT bigWig signal p-value ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF482CMU, ENCFF662BBY 533071999 ENCODE Processing Pipeline 4b9744871f33ff698da5a37b6f336d6b https://www.encodeproject.org/files/ENCFF721WXT/@@download/ENCFF721WXT.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF137HNJ bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF482CMU 4905460 ENCODE Processing Pipeline b70e9d46397434a3f3d1a5ddbb2d533b https://www.encodeproject.org/files/ENCFF137HNJ/@@download/ENCFF137HNJ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF641LBE bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF662BBY 5288083 ENCODE Processing Pipeline 7ac5c8405b5927e5f9b076b6ac89aa1a https://www.encodeproject.org/files/ENCFF641LBE/@@download/ENCFF641LBE.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF317FDT bed narrowPeak conservative idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF137HNJ, ENCFF419RSJ, ENCFF641LBE, ENCFF688YAV 112575 ENCODE Processing Pipeline 22ae477e9685f1d8122ffb421f7be648 https://www.encodeproject.org/files/ENCFF317FDT/@@download/ENCFF317FDT.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF149VXS bigWig fold change over control ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377MEH, ENCFF710NTS 507119863 ENCODE Processing Pipeline 5430e5ab3984a1f10939543178912888 https://www.encodeproject.org/files/ENCFF149VXS/@@download/ENCFF149VXS.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF316VIX bigWig signal p-value ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF353HYR, ENCFF377MEH, ENCFF710NTS 562782508 ENCODE Processing Pipeline bcaad97518593dc95cd90eb402870ea1 https://www.encodeproject.org/files/ENCFF316VIX/@@download/ENCFF316VIX.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF725FYI bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF353HYR, ENCFF377MEH, ENCFF710NTS 5946943 ENCODE Processing Pipeline 61e0c97c0c8aad5b5b0d5661bd427966 https://www.encodeproject.org/files/ENCFF725FYI/@@download/ENCFF725FYI.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF140YUP bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF599SPU 11108020 ENCODE Processing Pipeline bde08a9ca2099951bf9c06f7c5e1bbaf https://www.encodeproject.org/files/ENCFF140YUP/@@download/ENCFF140YUP.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF387RZY bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF725FYI 13211848 ENCODE Processing Pipeline 5d27f1690e24ce20d9ac934d95ec219b https://www.encodeproject.org/files/ENCFF387RZY/@@download/ENCFF387RZY.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF517YCC bed narrowPeak optimal idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF599SPU, ENCFF675GZY, ENCFF725FYI 119496 ENCODE Processing Pipeline 2b856671dd29071ba3eec1e8a4e8f69d https://www.encodeproject.org/files/ENCFF517YCC/@@download/ENCFF517YCC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF908NGW bigWig signal p-value ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF353HYR, ENCFF710NTS 533120106 ENCODE Processing Pipeline 46764257d40011e24bf99443f60ac111 https://www.encodeproject.org/files/ENCFF908NGW/@@download/ENCFF908NGW.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF785UJJ bigWig signal p-value ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377MEH, ENCFF710NTS 527993754 ENCODE Processing Pipeline 4a8cfc302fc8a1f891d8ebced7750898 https://www.encodeproject.org/files/ENCFF785UJJ/@@download/ENCFF785UJJ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF950NCQ bigWig fold change over control ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF353HYR, ENCFF377MEH, ENCFF710NTS 839346846 ENCODE Processing Pipeline f1a16b9459155fc3418683278794b190 https://www.encodeproject.org/files/ENCFF950NCQ/@@download/ENCFF950NCQ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF653HIF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF010SPN 255161 ENCODE Processing Pipeline 264924016f7bc25b5735a348e034bbaa https://www.encodeproject.org/files/ENCFF653HIF/@@download/ENCFF653HIF.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF977UEV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF517YCC 270656 ENCODE Processing Pipeline 428fb836562b50807fe440d5f6cb9e1b https://www.encodeproject.org/files/ENCFF977UEV/@@download/ENCFF977UEV.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF764CFU bigWig fold change over control ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF353HYR, ENCFF710NTS 514054661 ENCODE Processing Pipeline 5c166ee2e8ede21fd120a08b0767d231 https://www.encodeproject.org/files/ENCFF764CFU/@@download/ENCFF764CFU.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF675GZY bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF353HYR, ENCFF710NTS 4975729 ENCODE Processing Pipeline fdd0e953af4503ea9b37a6a43e52ce4c https://www.encodeproject.org/files/ENCFF675GZY/@@download/ENCFF675GZY.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF010SPN bed narrowPeak conservative idr thresholded peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF599SPU, ENCFF675GZY, ENCFF725FYI 109744 ENCODE Processing Pipeline 2c64aff8b684ec8fca65a8cb14800f67 https://www.encodeproject.org/files/ENCFF010SPN/@@download/ENCFF010SPN.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF599SPU bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377MEH, ENCFF710NTS 5291266 ENCODE Processing Pipeline cb06ef30f1d113827a464623c4fefc29 https://www.encodeproject.org/files/ENCFF599SPU/@@download/ENCFF599SPU.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF588MTD bigBed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF675GZY 11036303 ENCODE Processing Pipeline 96ff407d1ea36356c788eb5d2364da68 https://www.encodeproject.org/files/ENCFF588MTD/@@download/ENCFF588MTD.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000NYZ bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZO 1665053881 Richard Myers, HAIB 7aeca89582e6782a0d92691fceae94f6 https://www.encodeproject.org/files/ENCFF000NYZ/@@download/ENCFF000NYZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NZB bigBed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXY 1503585 Richard Myers, HAIB 0d6c669bf4fabb8ed820841ddd191264 https://www.encodeproject.org/files/ENCFF000NZB/@@download/ENCFF000NZB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NZC bigBed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXZ 712919 Richard Myers, HAIB 5d8b51a86f298062ba1cba56737d2000 https://www.encodeproject.org/files/ENCFF000NZC/@@download/ENCFF000NZC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NZD bigWig raw signal ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 63856218 Richard Myers, HAIB 3a680b02003d205f9c535b67b4a808cd https://www.encodeproject.org/files/ENCFF000NZD/@@download/ENCFF000NZD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NZE bigWig raw signal ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 17961651 Richard Myers, HAIB e7aa660d78ead6d251f6608c3fbd9d7e https://www.encodeproject.org/files/ENCFF000NZE/@@download/ENCFF000NZE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NZF bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NZQ 673582149 Richard Myers, HAIB e2ef2288343a6c53b9a038a9d0dc92d8 https://www.encodeproject.org/files/ENCFF000NZF/@@download/ENCFF000NZF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NZO fastq reads ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 732344143 Richard Myers, HAIB 07f90a31b8103bbdbc9ca742bde1990c https://www.encodeproject.org/files/ENCFF000NZO/@@download/ENCFF000NZO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NZQ fastq reads ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1349640631 Richard Myers, HAIB 3531a727a2f8da3414267a10652034be https://www.encodeproject.org/files/ENCFF000NZQ/@@download/ENCFF000NZQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001TXY bed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 827444 Richard Myers, HAIB fb1b898c5a765ee3ff980f7fbca7b1c6 https://www.encodeproject.org/files/ENCFF001TXY/@@download/ENCFF001TXY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001TXZ bed broadPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 445543 Richard Myers, HAIB 9ec3819efc30c9208a512b642c86a69d https://www.encodeproject.org/files/ENCFF001TXZ/@@download/ENCFF001TXZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CHJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 489675 ENCODE Consortium Analysis Working Group 92fda2a5af18eacb65aacdddbd0021ed https://www.encodeproject.org/files/ENCFF002CHJ/@@download/ENCFF002CHJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF627XPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHJ 1073668 ENCODE Consortium 14c314ca61d327251a3f9099fd558f72 https://www.encodeproject.org/files/ENCFF627XPJ/@@download/ENCFF627XPJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF052ZVD bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF643CGH 953697596 ENCODE Processing Pipeline f66725278ee7c33eedf7ccec76053907 https://www.encodeproject.org/files/ENCFF052ZVD/@@download/ENCFF052ZVD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF018FQW bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF643CGH 535815250 ENCODE Processing Pipeline d5d62a4389314d1d84256f89d76bf4b2 https://www.encodeproject.org/files/ENCFF018FQW/@@download/ENCFF018FQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF491WYR bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF643CGH 1446250586 ENCODE Processing Pipeline a4b1861d0092e03e39b81cc2f427f341 https://www.encodeproject.org/files/ENCFF491WYR/@@download/ENCFF491WYR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF275TPO bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF643CGH 511252471 ENCODE Processing Pipeline 91e886048b87d2550a9b0411e59da14f https://www.encodeproject.org/files/ENCFF275TPO/@@download/ENCFF275TPO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF917NZU bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF807MUK 535314901 ENCODE Processing Pipeline 2b1b473378d01e79b18b4728235ab282 https://www.encodeproject.org/files/ENCFF917NZU/@@download/ENCFF917NZU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF364VOW bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF807MUK 950934665 ENCODE Processing Pipeline ee7fb6ef3dda6a42bec1f2806c37689c https://www.encodeproject.org/files/ENCFF364VOW/@@download/ENCFF364VOW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF958KJV bam unfiltered alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF807MUK 1444697401 ENCODE Processing Pipeline 4d45cf243c3d722f7e2295e006525794 https://www.encodeproject.org/files/ENCFF958KJV/@@download/ENCFF958KJV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF512AMK bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF807MUK 506623907 ENCODE Processing Pipeline 5cb23442e8156f5df610311a5bb9bfbb https://www.encodeproject.org/files/ENCFF512AMK/@@download/ENCFF512AMK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF659YOA bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF018FQW, ENCFF100EIH, ENCFF438FFV 484513590 ENCODE Processing Pipeline 1c159657bf0fcf808afdb5e655efa84a https://www.encodeproject.org/files/ENCFF659YOA/@@download/ENCFF659YOA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF067IFI bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 510269386 ENCODE Processing Pipeline bd271db7daeb3fc2e8b5107bb0b3ef9e https://www.encodeproject.org/files/ENCFF067IFI/@@download/ENCFF067IFI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF227DAH bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FQW, ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 596426247 ENCODE Processing Pipeline 4326a1c69d62c6b8f3ca39c3af6a24a1 https://www.encodeproject.org/files/ENCFF227DAH/@@download/ENCFF227DAH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF964BYM bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF018FQW, ENCFF100EIH, ENCFF438FFV 289165238 ENCODE Processing Pipeline 7d18b7761398ce7ff1c3b0ca7623112e https://www.encodeproject.org/files/ENCFF964BYM/@@download/ENCFF964BYM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF628YUS bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 273897875 ENCODE Processing Pipeline 80ecb40e8461ecb6f3b61001b4586f61 https://www.encodeproject.org/files/ENCFF628YUS/@@download/ENCFF628YUS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF702MTT bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FQW, ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 488617594 ENCODE Processing Pipeline 40bdafb0b464a531d618a57db3c39048 https://www.encodeproject.org/files/ENCFF702MTT/@@download/ENCFF702MTT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF595ZLD bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF018FQW, ENCFF100EIH, ENCFF438FFV 4710440 ENCODE Processing Pipeline 9b78dc4690e82bbbf1488a225ebac441 https://www.encodeproject.org/files/ENCFF595ZLD/@@download/ENCFF595ZLD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF877BPJ bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FQW, ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 5407590 ENCODE Processing Pipeline 3783fdfde5af7fd39aba72c64f944dc9 https://www.encodeproject.org/files/ENCFF877BPJ/@@download/ENCFF877BPJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF314GUU bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF595ZLD 10601343 ENCODE Processing Pipeline 14da83f21ff8af004f76c646c15038e0 https://www.encodeproject.org/files/ENCFF314GUU/@@download/ENCFF314GUU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF518BTM bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF275TPO, ENCFF438FFV 4537940 ENCODE Processing Pipeline 07e99b0bea72c11d5224fe4cfbd27e4b https://www.encodeproject.org/files/ENCFF518BTM/@@download/ENCFF518BTM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF129XTQ bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF877BPJ 10998333 ENCODE Processing Pipeline 35f9ff1bb7dc4132d8a4fd8f7eb106c9 https://www.encodeproject.org/files/ENCFF129XTQ/@@download/ENCFF129XTQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF343DNF bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF518BTM 10289065 ENCODE Processing Pipeline dece2a71aba10b7cc507ab014b58eac6 https://www.encodeproject.org/files/ENCFF343DNF/@@download/ENCFF343DNF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF952CNN bed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF518BTM, ENCFF595ZLD, ENCFF877BPJ 367015 ENCODE Processing Pipeline a493185738fd02f435be01ef5597b440 https://www.encodeproject.org/files/ENCFF952CNN/@@download/ENCFF952CNN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF422ZQG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF952CNN 674339 ENCODE Processing Pipeline 66596b6c69de2bedd9cb46783147078a https://www.encodeproject.org/files/ENCFF422ZQG/@@download/ENCFF422ZQG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF196JGP bed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF518BTM, ENCFF595ZLD, ENCFF877BPJ 380037 ENCODE Processing Pipeline 208110c4fa01e0e67c5715c25d3145b4 https://www.encodeproject.org/files/ENCFF196JGP/@@download/ENCFF196JGP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF847INA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF196JGP 690810 ENCODE Processing Pipeline d7acc2495bc80ddfc21ec77ee50226bd https://www.encodeproject.org/files/ENCFF847INA/@@download/ENCFF847INA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF558GNG bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 274599881 ENCODE Processing Pipeline bbdd79cb3692bb8c18ca47f7d1b89a23 https://www.encodeproject.org/files/ENCFF558GNG/@@download/ENCFF558GNG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF469IOH bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 287421995 ENCODE Processing Pipeline d48dc86d7d972840d3595f724f263e74 https://www.encodeproject.org/files/ENCFF469IOH/@@download/ENCFF469IOH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF449NQT bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 592187920 ENCODE Processing Pipeline cf0b6c5e41666ac0e6fc828116da71c1 https://www.encodeproject.org/files/ENCFF449NQT/@@download/ENCFF449NQT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF997KZO bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 489451260 ENCODE Processing Pipeline 01912e8bfea1cd829a902db3f719a86f https://www.encodeproject.org/files/ENCFF997KZO/@@download/ENCFF997KZO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF759XQV bigWig signal p-value ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW, ENCFF917NZU 690107279 ENCODE Processing Pipeline 0df820f4990956087e7654c137a434f7 https://www.encodeproject.org/files/ENCFF759XQV/@@download/ENCFF759XQV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF525KHQ bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF565JQY 10336829 ENCODE Processing Pipeline b15ce1e89db613ae38d6628428c760fd https://www.encodeproject.org/files/ENCFF525KHQ/@@download/ENCFF525KHQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF252RWC bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 4449893 ENCODE Processing Pipeline e6409899363ddd545604df6c4df87440 https://www.encodeproject.org/files/ENCFF252RWC/@@download/ENCFF252RWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF470FRK bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF252RWC 10107060 ENCODE Processing Pipeline 9ec8d1e72abf26888660e414e1f7213d https://www.encodeproject.org/files/ENCFF470FRK/@@download/ENCFF470FRK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF513RHP bigBed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF915CCU 11015810 ENCODE Processing Pipeline 8697f8db8bd67c39faad6fb6e22acbef https://www.encodeproject.org/files/ENCFF513RHP/@@download/ENCFF513RHP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF565JQY bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 4541244 ENCODE Processing Pipeline 2b0974ffd44803847aca1d83fa6607fd https://www.encodeproject.org/files/ENCFF565JQY/@@download/ENCFF565JQY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF945PRR bigWig fold change over control ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW, ENCFF917NZU 476829490 ENCODE Processing Pipeline 31f4790ae46f7028c83a6f28d40d4b9d https://www.encodeproject.org/files/ENCFF945PRR/@@download/ENCFF945PRR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF915CCU bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW, ENCFF917NZU 5419864 ENCODE Processing Pipeline 4023c62bd9c7d0edcea64e79fda56e7d https://www.encodeproject.org/files/ENCFF915CCU/@@download/ENCFF915CCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF226YNH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF969EMZ 671691 ENCODE Processing Pipeline 1e8438943b38588f0b73474edb1430c9 https://www.encodeproject.org/files/ENCFF226YNH/@@download/ENCFF226YNH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF696YCM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339KUO 679410 ENCODE Processing Pipeline 02b6363b325a4c3a7ec8eef8c79d1c99 https://www.encodeproject.org/files/ENCFF696YCM/@@download/ENCFF696YCM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF969EMZ bed narrowPeak conservative idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252RWC, ENCFF565JQY, ENCFF915CCU 365148 ENCODE Processing Pipeline 3d7ef811461c889b0ff18ad7fd6b62dc https://www.encodeproject.org/files/ENCFF969EMZ/@@download/ENCFF969EMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF339KUO bed narrowPeak optimal idr thresholded peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252RWC, ENCFF565JQY, ENCFF915CCU 371645 ENCODE Processing Pipeline 6e212171131e6ee7f7d1bc41c78a0c29 https://www.encodeproject.org/files/ENCFF339KUO/@@download/ENCFF339KUO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000MWI bigBed broadPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TRK 270458 Richard Myers, HAIB cd3f1f1387ca094d8362c2b1bf5e4b8d https://www.encodeproject.org/files/ENCFF000MWI/@@download/ENCFF000MWI.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000MWJ bigBed broadPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TRL 279027 Richard Myers, HAIB a614e2e663c00a952245770cf6855849 https://www.encodeproject.org/files/ENCFF000MWJ/@@download/ENCFF000MWJ.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000MWK bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MWR 1479102561 Richard Myers, HAIB 277c8e162ce8672db52f7c37323456c6 https://www.encodeproject.org/files/ENCFF000MWK/@@download/ENCFF000MWK.bam hg19 archived low read length biological replicates with identical biosample ENCFF000MWL bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000MWV 1951872284 Richard Myers, HAIB 956f565436c79bafe0f2c21edf6aaf99 https://www.encodeproject.org/files/ENCFF000MWL/@@download/ENCFF000MWL.bam hg19 archived low read length biological replicates with identical biosample ENCFF000MWM bigWig raw signal ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 1 8435358 Richard Myers, HAIB 87fe3cf050fdbcd40979c41e263d035f https://www.encodeproject.org/files/ENCFF000MWM/@@download/ENCFF000MWM.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000MWN bigWig raw signal ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 1 13152616 Richard Myers, HAIB b01534f9d4b9ada083539567ea58c1f8 https://www.encodeproject.org/files/ENCFF000MWN/@@download/ENCFF000MWN.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000MWR fastq reads ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1465772209 Richard Myers, HAIB 9d583412509a7f6c8b59c186e7668eeb https://www.encodeproject.org/files/ENCFF000MWR/@@download/ENCFF000MWR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF000MWV fastq reads ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1958922263 Richard Myers, HAIB a7f8fea140cb20c8a2cc649479735b92 https://www.encodeproject.org/files/ENCFF000MWV/@@download/ENCFF000MWV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF001TRK bed broadPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 1 119243 Richard Myers, HAIB 9a033fe031324ce8e9510144c674a79d https://www.encodeproject.org/files/ENCFF001TRK/@@download/ENCFF001TRK.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF001TRL bed broadPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 1 134692 Richard Myers, HAIB e314747374d7d8fbff011d21f63a34e9 https://www.encodeproject.org/files/ENCFF001TRL/@@download/ENCFF001TRL.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF002CFG bed narrowPeak optimal idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 171585 ENCODE Consortium Analysis Working Group 855e1ac06f0ade38ebf68e24b50e1240 https://www.encodeproject.org/files/ENCFF002CFG/@@download/ENCFF002CFG.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF042NFZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFG 506042 ENCODE Consortium f8418e171c3cdacb54631f0e22e8d2a7 https://www.encodeproject.org/files/ENCFF042NFZ/@@download/ENCFF042NFZ.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF697IMJ bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MWR, ENCFF643CGH 935860438 ENCODE Processing Pipeline ab4296a0f502639983c28a38df35e814 https://www.encodeproject.org/files/ENCFF697IMJ/@@download/ENCFF697IMJ.bam GRCh38 released low read length biological replicates with identical biosample ENCFF798VAK bam unfiltered alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MWR, ENCFF643CGH 1607681427 ENCODE Processing Pipeline 74d655ed677b4acd829f13794d12789c https://www.encodeproject.org/files/ENCFF798VAK/@@download/ENCFF798VAK.bam GRCh38 released low read length biological replicates with identical biosample ENCFF675HNB bam unfiltered alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MWV, ENCFF643CGH 2125526413 ENCODE Processing Pipeline a9f533e08dca977843be1765afa0af01 https://www.encodeproject.org/files/ENCFF675HNB/@@download/ENCFF675HNB.bam GRCh38 released low read length biological replicates with identical biosample ENCFF523LJK bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MWV, ENCFF643CGH 1291127895 ENCODE Processing Pipeline 1fccfd21c43d1a3e03a0ea65b65331e8 https://www.encodeproject.org/files/ENCFF523LJK/@@download/ENCFF523LJK.bam GRCh38 released low read length biological replicates with identical biosample ENCFF102RTL bam unfiltered alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MWR, ENCFF807MUK 1601869760 ENCODE Processing Pipeline c6ec14656c8119dc0e81aae5ecdd5fc4 https://www.encodeproject.org/files/ENCFF102RTL/@@download/ENCFF102RTL.bam hg19 released low read length biological replicates with identical biosample ENCFF214OIG bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MWR, ENCFF807MUK 936042068 ENCODE Processing Pipeline 9ecf1c2e567e6168404e607a36f2663f https://www.encodeproject.org/files/ENCFF214OIG/@@download/ENCFF214OIG.bam hg19 released low read length biological replicates with identical biosample ENCFF476QIG bam unfiltered alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MWV, ENCFF807MUK 2119805604 ENCODE Processing Pipeline 11dcd09a77659dee58b014bf7fd3d277 https://www.encodeproject.org/files/ENCFF476QIG/@@download/ENCFF476QIG.bam hg19 released low read length biological replicates with identical biosample ENCFF488IBU bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MWV, ENCFF807MUK 1291191700 ENCODE Processing Pipeline f322b755b94ffb769f18ea0e2c9ab0e4 https://www.encodeproject.org/files/ENCFF488IBU/@@download/ENCFF488IBU.bam hg19 released low read length biological replicates with identical biosample ENCFF622PBL bigWig signal p-value ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF697IMJ 593076675 ENCODE Processing Pipeline 95c619440d4774445bd65f82dfc74579 https://www.encodeproject.org/files/ENCFF622PBL/@@download/ENCFF622PBL.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF463NSR bigWig signal p-value ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF523LJK, ENCFF656HEF 731108367 ENCODE Processing Pipeline 1181530a61f5831f36016f64d96d7146 https://www.encodeproject.org/files/ENCFF463NSR/@@download/ENCFF463NSR.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF494GFB bigWig signal p-value ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF523LJK, ENCFF656HEF, ENCFF697IMJ 818318658 ENCODE Processing Pipeline 4b827144dfb14c1df2a15c99087cbdcf https://www.encodeproject.org/files/ENCFF494GFB/@@download/ENCFF494GFB.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF668RXF bigWig fold change over control ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF697IMJ 558320929 ENCODE Processing Pipeline a148bf127229949f2ee0f703f24bf7ea https://www.encodeproject.org/files/ENCFF668RXF/@@download/ENCFF668RXF.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF406LCV bigWig fold change over control ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF523LJK, ENCFF656HEF 684036430 ENCODE Processing Pipeline f1721300b13b5bd33049f702d103d54d https://www.encodeproject.org/files/ENCFF406LCV/@@download/ENCFF406LCV.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF705EUJ bigWig fold change over control ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF523LJK, ENCFF656HEF, ENCFF697IMJ 968417451 ENCODE Processing Pipeline f4026de6fe56b2a2d7370f27ddd51388 https://www.encodeproject.org/files/ENCFF705EUJ/@@download/ENCFF705EUJ.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF428AQR bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF523LJK, ENCFF656HEF, ENCFF697IMJ 6882638 ENCODE Processing Pipeline a163df53a865631549c263c4cb3e000a https://www.encodeproject.org/files/ENCFF428AQR/@@download/ENCFF428AQR.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF216EYM bed narrowPeak conservative idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF274CGL, ENCFF419RSJ, ENCFF428AQR, ENCFF672LYJ 184104 ENCODE Processing Pipeline 8b0a0e61049b6c12f7f076aa811b9f2d https://www.encodeproject.org/files/ENCFF216EYM/@@download/ENCFF216EYM.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF417XUC bigBed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF672LYJ 13279103 ENCODE Processing Pipeline 0e3c43900734181deb6f94941df766ad https://www.encodeproject.org/files/ENCFF417XUC/@@download/ENCFF417XUC.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF072NOR bigBed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF274CGL 13150135 ENCODE Processing Pipeline 275e57cc84e0f20d73d3d9f98218c336 https://www.encodeproject.org/files/ENCFF072NOR/@@download/ENCFF072NOR.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF818POY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF216EYM 427767 ENCODE Processing Pipeline e1ccaf0298462a868b7da526573e3a39 https://www.encodeproject.org/files/ENCFF818POY/@@download/ENCFF818POY.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF672LYJ bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF697IMJ 6098964 ENCODE Processing Pipeline c320087fcfbe6b88ad18708d56966205 https://www.encodeproject.org/files/ENCFF672LYJ/@@download/ENCFF672LYJ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF274CGL bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF523LJK, ENCFF656HEF 6225873 ENCODE Processing Pipeline 01fa803a18a998f2ceeb0bdf7cc116ce https://www.encodeproject.org/files/ENCFF274CGL/@@download/ENCFF274CGL.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF062CUB bigBed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF428AQR 13170681 ENCODE Processing Pipeline 4bd61b2c8b03aef4bf752458f4154e15 https://www.encodeproject.org/files/ENCFF062CUB/@@download/ENCFF062CUB.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF826YLA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF851UTY 449905 ENCODE Processing Pipeline d80957d2f332221a7c2e4f202ff9d0a7 https://www.encodeproject.org/files/ENCFF826YLA/@@download/ENCFF826YLA.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF851UTY bed narrowPeak optimal idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF274CGL, ENCFF419RSJ, ENCFF428AQR, ENCFF672LYJ 197435 ENCODE Processing Pipeline e06e0d40cee0a6b92de8eb706f0f3b65 https://www.encodeproject.org/files/ENCFF851UTY/@@download/ENCFF851UTY.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF519CWS bigWig fold change over control ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF214OIG, ENCFF864UEQ 573211240 ENCODE Processing Pipeline 74061b4685dce1bf646dd036b84f96c8 https://www.encodeproject.org/files/ENCFF519CWS/@@download/ENCFF519CWS.bigWig hg19 released low read length biological replicates with identical biosample ENCFF769RYR bigWig signal p-value ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF214OIG, ENCFF864UEQ 594459419 ENCODE Processing Pipeline e2b9cb5c69a3681ec289894a0f6c3cb9 https://www.encodeproject.org/files/ENCFF769RYR/@@download/ENCFF769RYR.bigWig hg19 released low read length biological replicates with identical biosample ENCFF818PIJ bigWig signal p-value ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF488IBU, ENCFF864UEQ 655351791 ENCODE Processing Pipeline 33bc19da0c6b3a266cff836df7712ad2 https://www.encodeproject.org/files/ENCFF818PIJ/@@download/ENCFF818PIJ.bigWig hg19 released low read length biological replicates with identical biosample ENCFF380IHT bigWig signal p-value ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214OIG, ENCFF488IBU, ENCFF864UEQ 818448481 ENCODE Processing Pipeline a6e83cc56752545f09d15f19d1d9d681 https://www.encodeproject.org/files/ENCFF380IHT/@@download/ENCFF380IHT.bigWig hg19 released low read length biological replicates with identical biosample ENCFF377INI bigWig fold change over control ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214OIG, ENCFF488IBU, ENCFF864UEQ 966006548 ENCODE Processing Pipeline 0d02bd9f40218ee6534227017b20ecdf https://www.encodeproject.org/files/ENCFF377INI/@@download/ENCFF377INI.bigWig hg19 released low read length biological replicates with identical biosample ENCFF099UQJ bigWig fold change over control ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF488IBU, ENCFF864UEQ 683083162 ENCODE Processing Pipeline 60e409c3dc0d3071c5ab00278b0158f3 https://www.encodeproject.org/files/ENCFF099UQJ/@@download/ENCFF099UQJ.bigWig hg19 released low read length biological replicates with identical biosample ENCFF524QEN bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214OIG, ENCFF488IBU, ENCFF864UEQ 6912582 ENCODE Processing Pipeline 4b0a65047041c1dc37c97e9647ecc4fb https://www.encodeproject.org/files/ENCFF524QEN/@@download/ENCFF524QEN.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF247OWV bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF214OIG, ENCFF864UEQ 6100074 ENCODE Processing Pipeline 5746dd037249b5a268b02ecb52543883 https://www.encodeproject.org/files/ENCFF247OWV/@@download/ENCFF247OWV.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF848TNU bigBed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF556COW 13149590 ENCODE Processing Pipeline 35732f9163e233a2901789ade230140a https://www.encodeproject.org/files/ENCFF848TNU/@@download/ENCFF848TNU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF203JHB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF112IQR 428413 ENCODE Processing Pipeline f858d170f920e6c5ab7c1d2f9a97d7fb https://www.encodeproject.org/files/ENCFF203JHB/@@download/ENCFF203JHB.bigBed hg19 released low read length biological replicates with identical biosample ENCFF913MUA bed narrowPeak optimal idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF247OWV, ENCFF524QEN, ENCFF556COW 193791 ENCODE Processing Pipeline 88ca13499d91733e358e058e7c845c7c https://www.encodeproject.org/files/ENCFF913MUA/@@download/ENCFF913MUA.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF556COW bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF488IBU, ENCFF864UEQ 6206995 ENCODE Processing Pipeline c72a2419addc25c2b95728a215891382 https://www.encodeproject.org/files/ENCFF556COW/@@download/ENCFF556COW.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF380ZRZ bigBed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF524QEN 13166478 ENCODE Processing Pipeline 820a2fe1fe7f6e344d56588bfa8f1c5c https://www.encodeproject.org/files/ENCFF380ZRZ/@@download/ENCFF380ZRZ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF064AQC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF913MUA 443503 ENCODE Processing Pipeline 59083c74f894cc5f62a8d0d6f7ba23b7 https://www.encodeproject.org/files/ENCFF064AQC/@@download/ENCFF064AQC.bigBed hg19 released low read length biological replicates with identical biosample ENCFF362ASM bigBed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF247OWV 13274504 ENCODE Processing Pipeline 934e268ca7723e6b8c5cde5981760469 https://www.encodeproject.org/files/ENCFF362ASM/@@download/ENCFF362ASM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF112IQR bed narrowPeak conservative idr thresholded peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF247OWV, ENCFF524QEN, ENCFF556COW 184676 ENCODE Processing Pipeline 2a018376f5ed61526ed5a14eef5ae506 https://www.encodeproject.org/files/ENCFF112IQR/@@download/ENCFF112IQR.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF928MCL fastq reads ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1393297540 Richard Myers, HAIB 4aee42d225bfaefb599dfc7e5b0d0fb2 SRA:SRR5331379 https://www.encodeproject.org/files/ENCFF928MCL/@@download/ENCFF928MCL.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649ROJ fastq reads ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1692088325 Richard Myers, HAIB 99e01925768e490675cdb6ee0207bd19 SRA:SRR5331378 https://www.encodeproject.org/files/ENCFF649ROJ/@@download/ENCFF649ROJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF721QQA bam unfiltered alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF928MCL 1609591267 ENCODE Processing Pipeline 246ac45a4cd8b81b4c3063f3c1d6124c https://www.encodeproject.org/files/ENCFF721QQA/@@download/ENCFF721QQA.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304OJT bam unfiltered alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF649ROJ 1974046062 ENCODE Processing Pipeline 74dd7ee7d876f87cc1931284f052f8cc https://www.encodeproject.org/files/ENCFF304OJT/@@download/ENCFF304OJT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF744DAV bam unfiltered alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF928MCL 1607128311 ENCODE Processing Pipeline ef949e50c97ea61a9c275200616b81f2 https://www.encodeproject.org/files/ENCFF744DAV/@@download/ENCFF744DAV.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF327HGF bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF928MCL 1253372090 ENCODE Processing Pipeline 3fe7b202743e3e1ca4753218762e6910 https://www.encodeproject.org/files/ENCFF327HGF/@@download/ENCFF327HGF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649DFV bam unfiltered alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 76 ENCFF649ROJ, ENCFF807MUK 1969766549 ENCODE Processing Pipeline 57868429baa76b93298717fd6b204678 https://www.encodeproject.org/files/ENCFF649DFV/@@download/ENCFF649DFV.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF578RKV bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF649ROJ 1561009394 ENCODE Processing Pipeline 395cb10e5f888cf2fefd9cf36d01d901 https://www.encodeproject.org/files/ENCFF578RKV/@@download/ENCFF578RKV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF697DRW bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF928MCL 1252951867 ENCODE Processing Pipeline 50608a61416fc596aa32335488147720 https://www.encodeproject.org/files/ENCFF697DRW/@@download/ENCFF697DRW.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454AYY bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 76 ENCFF649ROJ, ENCFF807MUK 1560031248 ENCODE Processing Pipeline a283f8c646208343c86f49e660439304 https://www.encodeproject.org/files/ENCFF454AYY/@@download/ENCFF454AYY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392CPT bigWig signal p-value ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF578RKV 651527659 ENCODE Processing Pipeline c2d9315ff7c449bc98b9718e6fe2a4b2 https://www.encodeproject.org/files/ENCFF392CPT/@@download/ENCFF392CPT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF232PPT bigWig signal p-value ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF327HGF, ENCFF578RKV 669827773 ENCODE Processing Pipeline ad73e589793457e53aa61754530aadd1 https://www.encodeproject.org/files/ENCFF232PPT/@@download/ENCFF232PPT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF766RSM bigWig signal p-value ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF327HGF 634921096 ENCODE Processing Pipeline c49d9486a5c19398347f33bc654beb2e https://www.encodeproject.org/files/ENCFF766RSM/@@download/ENCFF766RSM.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF282KDI bigWig fold change over control ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF327HGF 500556471 ENCODE Processing Pipeline 5b02e4faaf730400fd53683a21f6445d https://www.encodeproject.org/files/ENCFF282KDI/@@download/ENCFF282KDI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF243FAP bigWig fold change over control ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF578RKV 583625916 ENCODE Processing Pipeline 5259f670582afa3761fe4fa62ae9f2ae https://www.encodeproject.org/files/ENCFF243FAP/@@download/ENCFF243FAP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF939AAT bigWig fold change over control ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF327HGF, ENCFF578RKV 889415579 ENCODE Processing Pipeline 9f7f6d39e30a8249e6c68f6a1aafc65f https://www.encodeproject.org/files/ENCFF939AAT/@@download/ENCFF939AAT.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF256TQH bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF578RKV 6402716 ENCODE Processing Pipeline 8367caaa93b1259ad5062318debde6f8 https://www.encodeproject.org/files/ENCFF256TQH/@@download/ENCFF256TQH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF021VBL bigBed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF256TQH 13043141 ENCODE Processing Pipeline 83c00e495d7b48f25e5e8eb0aff0baad https://www.encodeproject.org/files/ENCFF021VBL/@@download/ENCFF021VBL.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521DTH bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF327HGF, ENCFF578RKV 7009636 ENCODE Processing Pipeline f980a46889593d4e709ebc99f486e0a6 https://www.encodeproject.org/files/ENCFF521DTH/@@download/ENCFF521DTH.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF004JJW bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF327HGF 6613336 ENCODE Processing Pipeline c040d409aa5645061480292e7d257c4b https://www.encodeproject.org/files/ENCFF004JJW/@@download/ENCFF004JJW.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF821AMU bigBed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF004JJW 12564961 ENCODE Processing Pipeline 07cfc0c5cf54c8ee08ca97369d5afcb3 https://www.encodeproject.org/files/ENCFF821AMU/@@download/ENCFF821AMU.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF333ROM bigBed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF521DTH 12735642 ENCODE Processing Pipeline ebd17646c70492e954c2df04e27f1ab9 https://www.encodeproject.org/files/ENCFF333ROM/@@download/ENCFF333ROM.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927IXY bigBed narrowPeak conservative idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF906KLB 434199 ENCODE Processing Pipeline 186b44093e4d7f3c3f89115c14d39ec3 https://www.encodeproject.org/files/ENCFF927IXY/@@download/ENCFF927IXY.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF906KLB bed narrowPeak conservative idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF004JJW, ENCFF256TQH, ENCFF419RSJ, ENCFF521DTH 232491 ENCODE Processing Pipeline bdffb3ad8033fd552856c44852df85e3 https://www.encodeproject.org/files/ENCFF906KLB/@@download/ENCFF906KLB.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF053GKA bed narrowPeak optimal idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF004JJW, ENCFF256TQH, ENCFF419RSJ, ENCFF521DTH 288179 ENCODE Processing Pipeline a1b0b7beffa17637d6e83981e6100edf https://www.encodeproject.org/files/ENCFF053GKA/@@download/ENCFF053GKA.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178LDO bigBed narrowPeak optimal idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF053GKA 619186 ENCODE Processing Pipeline 75dba3854ab78b17ac47433522e46dec https://www.encodeproject.org/files/ENCFF178LDO/@@download/ENCFF178LDO.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF654XJH bigWig signal p-value ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF454AYY 1284747133 ENCODE Processing Pipeline 0dff582cbe5a833da2c782f63cc08a34 https://www.encodeproject.org/files/ENCFF654XJH/@@download/ENCFF654XJH.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF848OVG bigWig signal p-value ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697DRW 1279927596 ENCODE Processing Pipeline ecfded0247a7a5968aee42365ada0759 https://www.encodeproject.org/files/ENCFF848OVG/@@download/ENCFF848OVG.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF059XUT bigWig signal p-value ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF454AYY, ENCFF697DRW 1617535912 ENCODE Processing Pipeline b98d7d4691845ce88bba110aea888e17 https://www.encodeproject.org/files/ENCFF059XUT/@@download/ENCFF059XUT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF938XLK bigWig fold change over control ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF454AYY 995397029 ENCODE Processing Pipeline bb52a1eb751e920a8db2e7311120ae38 https://www.encodeproject.org/files/ENCFF938XLK/@@download/ENCFF938XLK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF646IGY bigWig fold change over control ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF454AYY, ENCFF697DRW 1445343571 ENCODE Processing Pipeline 541fadd1c58f6e41df13c13ada546d76 https://www.encodeproject.org/files/ENCFF646IGY/@@download/ENCFF646IGY.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF331UVQ bigWig fold change over control ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697DRW 903955248 ENCODE Processing Pipeline d81393653961825a4a512ecad759a4d3 https://www.encodeproject.org/files/ENCFF331UVQ/@@download/ENCFF331UVQ.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF365ZGD bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF454AYY 6859543 ENCODE Processing Pipeline f1632e4dc7f3997b93294987f5d079d5 https://www.encodeproject.org/files/ENCFF365ZGD/@@download/ENCFF365ZGD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF561ICJ bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697DRW 6858502 ENCODE Processing Pipeline d3e949555df36dc36966d1ddb939371d https://www.encodeproject.org/files/ENCFF561ICJ/@@download/ENCFF561ICJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF166NFR bed narrowPeak optimal idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF365ZGD, ENCFF561ICJ, ENCFF827NBF 272344 ENCODE Processing Pipeline 067e2e5d44a2f5ff4be900c6a27fe9d6 https://www.encodeproject.org/files/ENCFF166NFR/@@download/ENCFF166NFR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF827NBF bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF454AYY, ENCFF697DRW 7081561 ENCODE Processing Pipeline 7b01bf9e2fad2fadac1c260f9a238b71 https://www.encodeproject.org/files/ENCFF827NBF/@@download/ENCFF827NBF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF340NLF bigBed narrowPeak optimal idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF166NFR 506299 ENCODE Processing Pipeline 4bfab3ec5fac10f559d16c425b4e03c1 https://www.encodeproject.org/files/ENCFF340NLF/@@download/ENCFF340NLF.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF564UGX bed narrowPeak conservative idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF365ZGD, ENCFF561ICJ, ENCFF827NBF 238774 ENCODE Processing Pipeline b3adc2b53cb4d281a9ba3b49dc82b47b https://www.encodeproject.org/files/ENCFF564UGX/@@download/ENCFF564UGX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF205YHD bigBed narrowPeak conservative idr thresholded peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF564UGX 461113 ENCODE Processing Pipeline 84acad594d770ec9ac37aff7e39d9164 https://www.encodeproject.org/files/ENCFF205YHD/@@download/ENCFF205YHD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF707CQY bigBed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF561ICJ 12395994 ENCODE Processing Pipeline 2247bbabade9de6de265429bb91ab1f4 https://www.encodeproject.org/files/ENCFF707CQY/@@download/ENCFF707CQY.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF415JPA bigBed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF827NBF 12631454 ENCODE Processing Pipeline 94c8270c327f73c0e9e92fdbdb6c63e6 https://www.encodeproject.org/files/ENCFF415JPA/@@download/ENCFF415JPA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF164XBZ bigBed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF365ZGD 12943294 ENCODE Processing Pipeline 31f5700c47939248413790646e4df57c https://www.encodeproject.org/files/ENCFF164XBZ/@@download/ENCFF164XBZ.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000QUQ bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QVE 1044101987 Richard Myers, HAIB 3ddb2781e76a1a4b16690130b301075c https://www.encodeproject.org/files/ENCFF000QUQ/@@download/ENCFF000QUQ.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000QUR bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QVC 725289381 Richard Myers, HAIB c59461ce9f357234faac4a4289b6a050 https://www.encodeproject.org/files/ENCFF000QUR/@@download/ENCFF000QUR.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000QUS bigBed broadPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UON 535228 Richard Myers, HAIB a0ce2a40e8997aa0180f074ca9cf3cc9 https://www.encodeproject.org/files/ENCFF000QUS/@@download/ENCFF000QUS.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000QUT bigBed broadPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UOO 480755 Richard Myers, HAIB b1a9cb456adf8e22713489a36906b3bc https://www.encodeproject.org/files/ENCFF000QUT/@@download/ENCFF000QUT.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000QUU bigWig raw signal ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 22779335 Richard Myers, HAIB fb9b4b07b83a3fcfd3e62d4ad9f4f23d https://www.encodeproject.org/files/ENCFF000QUU/@@download/ENCFF000QUU.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000QUW bigWig raw signal ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 15399002 Richard Myers, HAIB 4010db7bae1871b45020cbb66f3550ad https://www.encodeproject.org/files/ENCFF000QUW/@@download/ENCFF000QUW.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000QVC fastq reads ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 713597139 Richard Myers, HAIB 172daf07fd17e2b7044d8da49a3ec019 https://www.encodeproject.org/files/ENCFF000QVC/@@download/ENCFF000QVC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QVY/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000QVE fastq reads ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1056288327 Richard Myers, HAIB 3e6d4c521ae42595268578d57de7a3d9 https://www.encodeproject.org/files/ENCFF000QVE/@@download/ENCFF000QVE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QVY/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF001UON bed broadPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 279688 Richard Myers, HAIB 82db0331cdb947a9559f36edabaec1e3 https://www.encodeproject.org/files/ENCFF001UON/@@download/ENCFF001UON.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UOO bed broadPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 244748 Richard Myers, HAIB c84dae0badfdead1d42eaaa3c5235ceb https://www.encodeproject.org/files/ENCFF001UOO/@@download/ENCFF001UOO.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF022VKY bam unfiltered alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVC, ENCFF643CGH 851322058 ENCODE Processing Pipeline 86da9b50713fadc0476d33b7c73d8305 https://www.encodeproject.org/files/ENCFF022VKY/@@download/ENCFF022VKY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF091GEA bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVC, ENCFF643CGH 471510621 ENCODE Processing Pipeline a7df480b603b49bc350b1f575a0ff1b2 https://www.encodeproject.org/files/ENCFF091GEA/@@download/ENCFF091GEA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF481LPT bam unfiltered alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVE, ENCFF643CGH 1263438990 ENCODE Processing Pipeline 59e44c0da996fd61d3d677912fafd276 https://www.encodeproject.org/files/ENCFF481LPT/@@download/ENCFF481LPT.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF565LZS bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVE, ENCFF643CGH 721783471 ENCODE Processing Pipeline 83a8d0b143eca18da7cd320a4853522c https://www.encodeproject.org/files/ENCFF565LZS/@@download/ENCFF565LZS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF415RJB bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVC, ENCFF807MUK 471786864 ENCODE Processing Pipeline 16d5d8e0856a748bbcae7c90e1d5a3d2 https://www.encodeproject.org/files/ENCFF415RJB/@@download/ENCFF415RJB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF950YYG bam unfiltered alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVC, ENCFF807MUK 849673421 ENCODE Processing Pipeline 535d2d3a700a4293b6e7c1928f6318fb https://www.encodeproject.org/files/ENCFF950YYG/@@download/ENCFF950YYG.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF967XIY bam unfiltered alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVE, ENCFF807MUK 1260910068 ENCODE Processing Pipeline ee93860f5fc2dd63da055ea7f5d56cfc https://www.encodeproject.org/files/ENCFF967XIY/@@download/ENCFF967XIY.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF523END bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVE, ENCFF807MUK 722198110 ENCODE Processing Pipeline 4460613f75839e4a4f8f5565abe2c9e0 https://www.encodeproject.org/files/ENCFF523END/@@download/ENCFF523END.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF035POB bigWig signal p-value ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF565LZS 331686373 ENCODE Processing Pipeline b15ddd9b4dabf331acd332def5bccb5d https://www.encodeproject.org/files/ENCFF035POB/@@download/ENCFF035POB.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF763PXA bigWig signal p-value ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF091GEA 292467166 ENCODE Processing Pipeline 56afd15215536c0c2032da5ab88ed274 https://www.encodeproject.org/files/ENCFF763PXA/@@download/ENCFF763PXA.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF113WNT bigWig signal p-value ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF091GEA, ENCFF565LZS 325567570 ENCODE Processing Pipeline 95ee326c6e62adb9b49877ec25aa553a https://www.encodeproject.org/files/ENCFF113WNT/@@download/ENCFF113WNT.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF695GWY bigWig fold change over control ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF565LZS 302443558 ENCODE Processing Pipeline 1fa67d5ffa72f5cd02eb92d0c3a71d83 https://www.encodeproject.org/files/ENCFF695GWY/@@download/ENCFF695GWY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF708UOF bigWig fold change over control ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF091GEA 226801363 ENCODE Processing Pipeline 9764c108d241ad710c05f67c4ece7f5d https://www.encodeproject.org/files/ENCFF708UOF/@@download/ENCFF708UOF.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF364BPR bigWig fold change over control ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF091GEA, ENCFF565LZS 465661925 ENCODE Processing Pipeline c53960e756e453d69ea23d654b8e8529 https://www.encodeproject.org/files/ENCFF364BPR/@@download/ENCFF364BPR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF471PQR bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF565LZS 4877968 ENCODE Processing Pipeline 589f6efdf6de1713148083d8153cf0ab https://www.encodeproject.org/files/ENCFF471PQR/@@download/ENCFF471PQR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF091BQA bigBed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF509ZSR 10608372 ENCODE Processing Pipeline 528c6bd7f5b63e80a2c61f7d10c1c4c7 https://www.encodeproject.org/files/ENCFF091BQA/@@download/ENCFF091BQA.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF071IVL bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF091GEA, ENCFF565LZS 5705493 ENCODE Processing Pipeline cfce2aa9eac17bd7cce7dd17443770d7 https://www.encodeproject.org/files/ENCFF071IVL/@@download/ENCFF071IVL.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF509ZSR bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF091GEA 4751021 ENCODE Processing Pipeline eb5d992c6ed4df0346191868782fb103 https://www.encodeproject.org/files/ENCFF509ZSR/@@download/ENCFF509ZSR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF085GWF bigBed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF071IVL 13293572 ENCODE Processing Pipeline 52d5925cc84fce7ffa05eeb73dceea1c https://www.encodeproject.org/files/ENCFF085GWF/@@download/ENCFF085GWF.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF640YNG bigBed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF471PQR 10738923 ENCODE Processing Pipeline 6cae1277e45439bb5e9f39793ac005c9 https://www.encodeproject.org/files/ENCFF640YNG/@@download/ENCFF640YNG.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF395TFO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF259FAH 552496 ENCODE Processing Pipeline ed3d1d26bddded72dcaec27e390f6dd1 https://www.encodeproject.org/files/ENCFF395TFO/@@download/ENCFF395TFO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF259FAH bed narrowPeak conservative idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF071IVL, ENCFF419RSJ, ENCFF471PQR, ENCFF509ZSR 270285 ENCODE Processing Pipeline 97176b83c86ffff695b3b447791a151f https://www.encodeproject.org/files/ENCFF259FAH/@@download/ENCFF259FAH.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF896RCP bed narrowPeak optimal idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF071IVL, ENCFF419RSJ, ENCFF471PQR, ENCFF509ZSR 310837 ENCODE Processing Pipeline 59420386bcf1da63796dbc9c6e66e6b2 https://www.encodeproject.org/files/ENCFF896RCP/@@download/ENCFF896RCP.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF315WVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF896RCP 611831 ENCODE Processing Pipeline 1ac9a0d113277472d8d3de085527a676 https://www.encodeproject.org/files/ENCFF315WVJ/@@download/ENCFF315WVJ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF950TTB bigWig fold change over control ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF523END 306641766 ENCODE Processing Pipeline d598e5f019df1fcfae3f40000d73a0ea https://www.encodeproject.org/files/ENCFF950TTB/@@download/ENCFF950TTB.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF967GJW bigWig signal p-value ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF523END 331745961 ENCODE Processing Pipeline 8bf12e667c55df15e17b4a7401d54523 https://www.encodeproject.org/files/ENCFF967GJW/@@download/ENCFF967GJW.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF851EOI bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF523END 4897265 ENCODE Processing Pipeline f8533364cceb83c5cbf853228bd08260 https://www.encodeproject.org/files/ENCFF851EOI/@@download/ENCFF851EOI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF691VKD bigBed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF859NJV 13318450 ENCODE Processing Pipeline bd5cdeae574d844ed4968a8c2bbcb4a9 https://www.encodeproject.org/files/ENCFF691VKD/@@download/ENCFF691VKD.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF149BDF bigWig fold change over control ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041XFO, ENCFF415RJB, ENCFF523END 467191399 ENCODE Processing Pipeline de2566fc9131408def67bd7e9cb624a4 https://www.encodeproject.org/files/ENCFF149BDF/@@download/ENCFF149BDF.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF358CGQ bigBed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF851EOI 10765345 ENCODE Processing Pipeline e1dde5da68ae847bb71c8844433e4677 https://www.encodeproject.org/files/ENCFF358CGQ/@@download/ENCFF358CGQ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF252QDS bigBed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF655RQF 10611342 ENCODE Processing Pipeline c14c0def85ce623cad073c1933c74baf https://www.encodeproject.org/files/ENCFF252QDS/@@download/ENCFF252QDS.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF433UXC bigWig signal p-value ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041XFO, ENCFF415RJB, ENCFF523END 326092978 ENCODE Processing Pipeline 4f3f02688326ece09160902629ae6e4b https://www.encodeproject.org/files/ENCFF433UXC/@@download/ENCFF433UXC.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF351RTM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF184LUN 561703 ENCODE Processing Pipeline f6811fd77eb7c5a88a366c96b90a4812 https://www.encodeproject.org/files/ENCFF351RTM/@@download/ENCFF351RTM.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF474KHR bed narrowPeak optimal idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF655RQF, ENCFF851EOI, ENCFF859NJV 317492 ENCODE Processing Pipeline 54db63fc2e1d8bdcef504e2e0453ac68 https://www.encodeproject.org/files/ENCFF474KHR/@@download/ENCFF474KHR.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF271MQM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF474KHR 622617 ENCODE Processing Pipeline db43f68bd830bca7be1e0c32f20440cf https://www.encodeproject.org/files/ENCFF271MQM/@@download/ENCFF271MQM.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF112JGC bigWig fold change over control ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF415RJB 228884742 ENCODE Processing Pipeline 33c4f956a925585406d1d8585cb485c9 https://www.encodeproject.org/files/ENCFF112JGC/@@download/ENCFF112JGC.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF655RQF bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF415RJB 4751401 ENCODE Processing Pipeline 3998549b09b59c038386bb2da2c79f54 https://www.encodeproject.org/files/ENCFF655RQF/@@download/ENCFF655RQF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF184LUN bed narrowPeak conservative idr thresholded peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF655RQF, ENCFF851EOI, ENCFF859NJV 275687 ENCODE Processing Pipeline da0cc9087fe745064a5e7f17f8ed6c02 https://www.encodeproject.org/files/ENCFF184LUN/@@download/ENCFF184LUN.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF676QJH bigWig signal p-value ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF415RJB 282003371 ENCODE Processing Pipeline de90840580ab63ada93e73c662789fb4 https://www.encodeproject.org/files/ENCFF676QJH/@@download/ENCFF676QJH.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF859NJV bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041XFO, ENCFF415RJB, ENCFF523END 5730378 ENCODE Processing Pipeline ab1eefc16c4c2333698af3dba3ea52c1 https://www.encodeproject.org/files/ENCFF859NJV/@@download/ENCFF859NJV.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF379UBY fastq reads ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 2917825950 Richard Myers, HAIB 3b570c5843ed70c839182442b101319a SRA:SRR5339174 https://www.encodeproject.org/files/ENCFF379UBY/@@download/ENCFF379UBY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF885OGQ fastq reads ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1971996328 Richard Myers, HAIB d600bfeab2de185dbd5b5487fe7e45a8 SRA:SRR5339173 https://www.encodeproject.org/files/ENCFF885OGQ/@@download/ENCFF885OGQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF342MDN bam unfiltered alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF885OGQ 2220012550 ENCODE Processing Pipeline 1e8976a6e3f0f1f81f095c4fc2f2551c https://www.encodeproject.org/files/ENCFF342MDN/@@download/ENCFF342MDN.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF874IZI bam unfiltered alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF885OGQ 2216099529 ENCODE Processing Pipeline 2991a7bfb3626900d87bdcc88f7ab281 https://www.encodeproject.org/files/ENCFF874IZI/@@download/ENCFF874IZI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF230NIW bam unfiltered alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 76 ENCFF379UBY, ENCFF643CGH 3198142280 ENCODE Processing Pipeline e6fca1e6e98d4389ebef037feba3c289 https://www.encodeproject.org/files/ENCFF230NIW/@@download/ENCFF230NIW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF652UUS bam unfiltered alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 76 ENCFF379UBY, ENCFF807MUK 3190492892 ENCODE Processing Pipeline 3535274a82235ca577479ad4d8e53b7e https://www.encodeproject.org/files/ENCFF652UUS/@@download/ENCFF652UUS.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF103BEQ bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF885OGQ 1641550297 ENCODE Processing Pipeline d1c4acf45184797165174cf87261a677 https://www.encodeproject.org/files/ENCFF103BEQ/@@download/ENCFF103BEQ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF855QOS bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF885OGQ 1640884151 ENCODE Processing Pipeline 5bd3a38f947cb62d7447c22f77f6df59 https://www.encodeproject.org/files/ENCFF855QOS/@@download/ENCFF855QOS.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428OAR bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 76 ENCFF379UBY, ENCFF643CGH 2011926108 ENCODE Processing Pipeline 660f70c5d7f7f339d5866a4b39efeb91 https://www.encodeproject.org/files/ENCFF428OAR/@@download/ENCFF428OAR.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF988EJM bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 76 ENCFF379UBY, ENCFF807MUK 2010893336 ENCODE Processing Pipeline 6c0c448d3f1590d08a113f73d03080f0 https://www.encodeproject.org/files/ENCFF988EJM/@@download/ENCFF988EJM.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF785MWI bigWig signal p-value ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF428OAR 704380807 ENCODE Processing Pipeline 5be07dc3747ffd6292b95d6d9c08b12e https://www.encodeproject.org/files/ENCFF785MWI/@@download/ENCFF785MWI.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF117ROR bigWig signal p-value ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF103BEQ 629085570 ENCODE Processing Pipeline 9cf5fa04280a83eadec434f3656784f4 https://www.encodeproject.org/files/ENCFF117ROR/@@download/ENCFF117ROR.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF331YYT bigWig signal p-value ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF103BEQ, ENCFF428OAR 655711288 ENCODE Processing Pipeline 18d53587dc0842932f0cbfe9ada60637 https://www.encodeproject.org/files/ENCFF331YYT/@@download/ENCFF331YYT.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF220MOM bigWig fold change over control ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF428OAR 753068597 ENCODE Processing Pipeline 4e69975d69592b8e6ac30692ac73492f https://www.encodeproject.org/files/ENCFF220MOM/@@download/ENCFF220MOM.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF243MDF bigWig fold change over control ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF103BEQ 610503807 ENCODE Processing Pipeline fa2f9e15f0e12e2ede0cbdfc084db9b8 https://www.encodeproject.org/files/ENCFF243MDF/@@download/ENCFF243MDF.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF018PYH bigWig fold change over control ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF103BEQ, ENCFF428OAR 1089026782 ENCODE Processing Pipeline 42ae5a58c16a2ac3b591f7c3b1a437c3 https://www.encodeproject.org/files/ENCFF018PYH/@@download/ENCFF018PYH.bigWig GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF074AAK bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF428OAR 6949734 ENCODE Processing Pipeline 9a9cc1c1b0f25d0cabc2f25fc95f4606 https://www.encodeproject.org/files/ENCFF074AAK/@@download/ENCFF074AAK.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF508GKC bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF103BEQ 6953007 ENCODE Processing Pipeline 60973e322cd5b5512060ee4fc99ecdf2 https://www.encodeproject.org/files/ENCFF508GKC/@@download/ENCFF508GKC.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF662LNB bigBed narrowPeak conservative idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF848JMT 1415223 ENCODE Processing Pipeline 47b9c9caead6bab6b6b1be66bce69606 https://www.encodeproject.org/files/ENCFF662LNB/@@download/ENCFF662LNB.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF734SES bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF103BEQ, ENCFF428OAR 7166425 ENCODE Processing Pipeline 813e1d81f8aec0d2cd0628e7e8fa2961 https://www.encodeproject.org/files/ENCFF734SES/@@download/ENCFF734SES.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF239UFH bigBed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF074AAK 12403851 ENCODE Processing Pipeline 281a8cff5205fd4b16147b6b1836eb25 https://www.encodeproject.org/files/ENCFF239UFH/@@download/ENCFF239UFH.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF555VNX bigBed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF508GKC 12695244 ENCODE Processing Pipeline 8713bb87294c5beaac794416e0ca54b7 https://www.encodeproject.org/files/ENCFF555VNX/@@download/ENCFF555VNX.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF099NQY bigBed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF734SES 12457085 ENCODE Processing Pipeline 1a831350deaef7296f307b63818de3af https://www.encodeproject.org/files/ENCFF099NQY/@@download/ENCFF099NQY.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF848JMT bed narrowPeak conservative idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF074AAK, ENCFF419RSJ, ENCFF508GKC, ENCFF734SES 677883 ENCODE Processing Pipeline f771948fc981d0665238d7e569ac3ed2 https://www.encodeproject.org/files/ENCFF848JMT/@@download/ENCFF848JMT.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF085KWU bed narrowPeak optimal idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF074AAK, ENCFF419RSJ, ENCFF508GKC, ENCFF734SES 761945 ENCODE Processing Pipeline 7496d8c9446bd806f7770552cc3140e6 https://www.encodeproject.org/files/ENCFF085KWU/@@download/ENCFF085KWU.bed.gz GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF660DRM bigBed narrowPeak optimal idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF085KWU 1554606 ENCODE Processing Pipeline df1168c26f95c34b934e3c96f890248e https://www.encodeproject.org/files/ENCFF660DRM/@@download/ENCFF660DRM.bigBed GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF249DFU bigWig signal p-value ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF988EJM 1189777894 ENCODE Processing Pipeline 0a7e2314c0327cb9798fe791b3ffec8e https://www.encodeproject.org/files/ENCFF249DFU/@@download/ENCFF249DFU.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF786PYC bigWig signal p-value ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF855QOS 1330091554 ENCODE Processing Pipeline 8755df939ef8a4156c177bf290708f11 https://www.encodeproject.org/files/ENCFF786PYC/@@download/ENCFF786PYC.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685WBN bigWig signal p-value ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF855QOS, ENCFF988EJM 1441645827 ENCODE Processing Pipeline af4b64c1a61e35b667a6cf2b493db527 https://www.encodeproject.org/files/ENCFF685WBN/@@download/ENCFF685WBN.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF055YJP bigWig fold change over control ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF988EJM 1330948663 ENCODE Processing Pipeline fc0f8203869c9e898ce04e28926df364 https://www.encodeproject.org/files/ENCFF055YJP/@@download/ENCFF055YJP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF364LDS bigWig fold change over control ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF855QOS 1176930399 ENCODE Processing Pipeline b4260e818f37b6902e8a1faf0b869c74 https://www.encodeproject.org/files/ENCFF364LDS/@@download/ENCFF364LDS.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF423DKP bigWig fold change over control ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF855QOS, ENCFF988EJM 1807354567 ENCODE Processing Pipeline f0aeafe1fcdc4f2d03dacd5018b203a3 https://www.encodeproject.org/files/ENCFF423DKP/@@download/ENCFF423DKP.bigWig hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF495SZK bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF988EJM 7106587 ENCODE Processing Pipeline 90983671da0212dcd841eebfa680e2c7 https://www.encodeproject.org/files/ENCFF495SZK/@@download/ENCFF495SZK.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF977RZR bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF855QOS 7094454 ENCODE Processing Pipeline 68435eded05bd8b19828ee8e842ff060 https://www.encodeproject.org/files/ENCFF977RZR/@@download/ENCFF977RZR.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF834NKY bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF855QOS, ENCFF988EJM 7107657 ENCODE Processing Pipeline f71ebf13b77374616b3a156e5e86d8e4 https://www.encodeproject.org/files/ENCFF834NKY/@@download/ENCFF834NKY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF639ORV bigBed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF495SZK 12384439 ENCODE Processing Pipeline 8009965339e2fec962e3376952ab72d8 https://www.encodeproject.org/files/ENCFF639ORV/@@download/ENCFF639ORV.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF792HVS bigBed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF977RZR 12586465 ENCODE Processing Pipeline b92568fce2c0a442d107e904b279b3ed https://www.encodeproject.org/files/ENCFF792HVS/@@download/ENCFF792HVS.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF912HME bigBed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF834NKY 12341600 ENCODE Processing Pipeline 16c0cf141c81681a44898ca075652920 https://www.encodeproject.org/files/ENCFF912HME/@@download/ENCFF912HME.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF497AJW bed narrowPeak conservative idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF495SZK, ENCFF834NKY, ENCFF977RZR 710995 ENCODE Processing Pipeline 90209742bd3135cfd65fca1f1f9e14af https://www.encodeproject.org/files/ENCFF497AJW/@@download/ENCFF497AJW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF864FWG bigBed narrowPeak conservative idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF497AJW 1540114 ENCODE Processing Pipeline 6504ca037e1f923debcb8475fa4f4848 https://www.encodeproject.org/files/ENCFF864FWG/@@download/ENCFF864FWG.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF540CNJ bed narrowPeak optimal idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF495SZK, ENCFF834NKY, ENCFF977RZR 793976 ENCODE Processing Pipeline d9dc664bcc205c78313cb5ec41b987ac https://www.encodeproject.org/files/ENCFF540CNJ/@@download/ENCFF540CNJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF386FPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF540CNJ 1679142 ENCODE Processing Pipeline 35c98d240b1de50b70b4b401fd8080e4 https://www.encodeproject.org/files/ENCFF386FPJ/@@download/ENCFF386FPJ.bigBed hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000ZBS bam alignments ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZBY 207267628 Kevin Struhl, HMS ae6c3d24e10de7064ec789f4a5bcafa5 https://www.encodeproject.org/files/ENCFF000ZBS/@@download/ENCFF000ZBS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZBT bam alignments ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZCN 169163426 Kevin Struhl, HMS 9f5bae3aee3e27453c9d0c1819d41737 https://www.encodeproject.org/files/ENCFF000ZBT/@@download/ENCFF000ZBT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZBU bam alignments ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000ZCO 231618007 Kevin Struhl, HMS df10f95736f0ae1e9958562aa2aad357 https://www.encodeproject.org/files/ENCFF000ZBU/@@download/ENCFF000ZBU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZBV bigBed narrowPeak peaks ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPD 168022 Kevin Struhl, HMS cc59bfb5f520c29e0b8d01c49290dbc6 https://www.encodeproject.org/files/ENCFF000ZBV/@@download/ENCFF000ZBV.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZBW bigWig signal ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 319042695 Kevin Struhl, HMS 5404e1530a6972064128e6b1f567581f https://www.encodeproject.org/files/ENCFF000ZBW/@@download/ENCFF000ZBW.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ZBY fastq reads ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 183847341 Kevin Struhl, HMS 7ab1b5f694ac75061c15160c50f41c6a https://www.encodeproject.org/files/ENCFF000ZBY/@@download/ENCFF000ZBY.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000ZCN fastq reads ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 155879406 Kevin Struhl, HMS bb65b70ea1af2655d9a47d671c947d72 https://www.encodeproject.org/files/ENCFF000ZCN/@@download/ENCFF000ZCN.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000ZCO fastq reads ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 202449135 Kevin Struhl, HMS 733f4f69824a0c43168d4b241d1923cd https://www.encodeproject.org/files/ENCFF000ZCO/@@download/ENCFF000ZCO.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VPD bed narrowPeak peaks ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 34579 Kevin Struhl, HMS 0255769bf5158424ac1aa0f59759db60 https://www.encodeproject.org/files/ENCFF001VPD/@@download/ENCFF001VPD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CYL bed narrowPeak optimal idr thresholded peaks ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 38890 ENCODE Consortium Analysis Working Group 7838d8b05a9dbfdedb09c34d31bbe8e8 https://www.encodeproject.org/files/ENCFF002CYL/@@download/ENCFF002CYL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF943SAN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYL 138453 ENCODE Consortium ea157760025e9219b1f02c254aa89842 https://www.encodeproject.org/files/ENCFF943SAN/@@download/ENCFF943SAN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XJA bam alignments ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XJQ 1153813415 Michael Snyder, Stanford caa86d49a2faaa0c13f38f20228b520f https://www.encodeproject.org/files/ENCFF000XJA/@@download/ENCFF000XJA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XJB bigBed narrowPeak peaks ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIY 185190 Michael Snyder, Stanford 305a3fa3037bfb51c6d02214708db86d https://www.encodeproject.org/files/ENCFF000XJB/@@download/ENCFF000XJB.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XJC bam alignments ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XJL 494756001 Michael Snyder, Stanford 1edcd2cb33900a5811142a5a53fb048f https://www.encodeproject.org/files/ENCFF000XJC/@@download/ENCFF000XJC.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XJF bigWig signal ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 383225500 Michael Snyder, Stanford 24028cf9640ad8be720c2c58d13cccca https://www.encodeproject.org/files/ENCFF000XJF/@@download/ENCFF000XJF.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XJL fastq reads ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 389865976 Michael Snyder, Stanford f860a42d13b1b3d198573bc1b31effd1 https://www.encodeproject.org/files/ENCFF000XJL/@@download/ENCFF000XJL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIH/ released biological replicates with identical biosample insufficient read length ENCFF000XJQ fastq reads ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 869165628 Michael Snyder, Stanford 44e277cfd1ce7d648105d810dd14322b https://www.encodeproject.org/files/ENCFF000XJQ/@@download/ENCFF000XJQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIG/ released biological replicates with identical biosample insufficient read length ENCFF001VIY bed narrowPeak peaks ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 58839 Michael Snyder, Stanford e500c530d76a2ee2bceda7a6a5338385 https://www.encodeproject.org/files/ENCFF001VIY/@@download/ENCFF001VIY.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CSW bed narrowPeak optimal idr thresholded peaks ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 70752 ENCODE Consortium Analysis Working Group 766b48fd144a543f7d0430424014f1c2 https://www.encodeproject.org/files/ENCFF002CSW/@@download/ENCFF002CSW.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF716FNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSW 199573 ENCODE Consortium 696b822b7f5feba3fdc938f40ff8df2d https://www.encodeproject.org/files/ENCFF716FNJ/@@download/ENCFF716FNJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000MZI bigBed broadPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TSD 614613 Richard Myers, HAIB 28b7a985b46def73e2517599a35d39bd https://www.encodeproject.org/files/ENCFF000MZI/@@download/ENCFF000MZI.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000MZJ bigBed broadPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TSE 1071523 Richard Myers, HAIB 2af0f9ea53038c0418b823ead7007242 https://www.encodeproject.org/files/ENCFF000MZJ/@@download/ENCFF000MZJ.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000MZK bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MZW 1759525244 Richard Myers, HAIB 3f22779fcd52a9e278502499bde2f002 https://www.encodeproject.org/files/ENCFF000MZK/@@download/ENCFF000MZK.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000MZL bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000MZT 1335993892 Richard Myers, HAIB ef794f9d58e707e8fd09f72ca93c3165 https://www.encodeproject.org/files/ENCFF000MZL/@@download/ENCFF000MZL.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000MZM bigWig raw signal ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 1 21993136 Richard Myers, HAIB 699f5b0c5b01d9f78ae7d20ff643df75 https://www.encodeproject.org/files/ENCFF000MZM/@@download/ENCFF000MZM.bigWig hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000MZN bigWig raw signal ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 1 38287861 Richard Myers, HAIB 626df602f4d9e5b3e88c08df6ac6bf08 https://www.encodeproject.org/files/ENCFF000MZN/@@download/ENCFF000MZN.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000MZT fastq reads ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1340075967 Richard Myers, HAIB 9e2be6884fe00e89cee36da8f369a356 https://www.encodeproject.org/files/ENCFF000MZT/@@download/ENCFF000MZT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000MZW fastq reads ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1761892911 Richard Myers, HAIB 9c4935af3f52b1811cc4dfa9545f2378 https://www.encodeproject.org/files/ENCFF000MZW/@@download/ENCFF000MZW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF001TSD bed broadPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 1 349944 Richard Myers, HAIB 11c1e41145f6d6657b0e6974a9875790 https://www.encodeproject.org/files/ENCFF001TSD/@@download/ENCFF001TSD.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001TSE bed broadPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 1 595245 Richard Myers, HAIB 01ca68e188ae6f0aa020fc80d67bf14e https://www.encodeproject.org/files/ENCFF001TSE/@@download/ENCFF001TSE.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CFN bed narrowPeak optimal idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 690173 ENCODE Consortium Analysis Working Group 880d3868aaf5aefbafbb19364ada7b71 https://www.encodeproject.org/files/ENCFF002CFN/@@download/ENCFF002CFN.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from missing control alignments ENCFF340KKH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFN 1611856 ENCODE Consortium 0c347f0b9a09936e0d68995adf324816 https://www.encodeproject.org/files/ENCFF340KKH/@@download/ENCFF340KKH.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF529FWD bam unfiltered alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZT, ENCFF643CGH 1451276669 ENCODE Processing Pipeline be6ccc03821c35a0b12c86b25c2cb7fc https://www.encodeproject.org/files/ENCFF529FWD/@@download/ENCFF529FWD.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF125MJO bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZT, ENCFF643CGH 911844798 ENCODE Processing Pipeline 6aea0da008ef8128b06bcd7dfa2b6d73 https://www.encodeproject.org/files/ENCFF125MJO/@@download/ENCFF125MJO.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF717EFF bam unfiltered alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZW, ENCFF643CGH 1910944281 ENCODE Processing Pipeline 61ed7db46cd0de0dc71bf70757643859 https://www.encodeproject.org/files/ENCFF717EFF/@@download/ENCFF717EFF.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF585INN bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZW, ENCFF643CGH 1136848851 ENCODE Processing Pipeline 8a86dec60845ff95dcbaa017f6e14fb0 https://www.encodeproject.org/files/ENCFF585INN/@@download/ENCFF585INN.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF687FZP bam unfiltered alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZT, ENCFF807MUK 1447640471 ENCODE Processing Pipeline fa08d869b6a1336ac5ab31119314332e https://www.encodeproject.org/files/ENCFF687FZP/@@download/ENCFF687FZP.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF694YNY bam unfiltered alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZW, ENCFF807MUK 1905965595 ENCODE Processing Pipeline 9b4e3dc4647c9b23d1015bb04150a97b https://www.encodeproject.org/files/ENCFF694YNY/@@download/ENCFF694YNY.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF159NGH bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZT, ENCFF807MUK 911961721 ENCODE Processing Pipeline 17ddc3f358276c44db275b9bc044419d https://www.encodeproject.org/files/ENCFF159NGH/@@download/ENCFF159NGH.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF983PHR bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZW, ENCFF807MUK 1136943540 ENCODE Processing Pipeline da7a55ca787d0233ed7ed7e04da0ffd9 https://www.encodeproject.org/files/ENCFF983PHR/@@download/ENCFF983PHR.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF549CCA bigWig signal p-value ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF585INN 623225111 ENCODE Processing Pipeline bb96d098ef3df1b6434dde1982431a83 https://www.encodeproject.org/files/ENCFF549CCA/@@download/ENCFF549CCA.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF760RPU bigWig signal p-value ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF125MJO 583516114 ENCODE Processing Pipeline ea8b9207a9df8d46cae796aa8785ebf8 https://www.encodeproject.org/files/ENCFF760RPU/@@download/ENCFF760RPU.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF172POF bigWig signal p-value ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF125MJO, ENCFF585INN 828078299 ENCODE Processing Pipeline 445b005acab767ce086df210365562e7 https://www.encodeproject.org/files/ENCFF172POF/@@download/ENCFF172POF.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF062RVU bigWig fold change over control ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF585INN 590584809 ENCODE Processing Pipeline a184a3efb4542f7d34a212124c210708 https://www.encodeproject.org/files/ENCFF062RVU/@@download/ENCFF062RVU.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF660SDY bigWig fold change over control ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF125MJO 528687637 ENCODE Processing Pipeline edf88554ca6c8a499678f15cf5ec5617 https://www.encodeproject.org/files/ENCFF660SDY/@@download/ENCFF660SDY.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF815VKQ bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF125MJO 6261853 ENCODE Processing Pipeline 804cabc7571eb11c8ec243ab62488114 https://www.encodeproject.org/files/ENCFF815VKQ/@@download/ENCFF815VKQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF003HMX bigBed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234WBQ 13298187 ENCODE Processing Pipeline 04382ba4bfe62f27d7e35699b43dd196 https://www.encodeproject.org/files/ENCFF003HMX/@@download/ENCFF003HMX.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF340TFY bigWig fold change over control ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF125MJO, ENCFF585INN 913054873 ENCODE Processing Pipeline 255c331c84fd22980d9598097d949b89 https://www.encodeproject.org/files/ENCFF340TFY/@@download/ENCFF340TFY.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF234WBQ bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF585INN 5778032 ENCODE Processing Pipeline e7f4a9f5a60b16b59363d70541ac8e5a https://www.encodeproject.org/files/ENCFF234WBQ/@@download/ENCFF234WBQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF477TDU bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF125MJO, ENCFF585INN 6709269 ENCODE Processing Pipeline 673aa93191e08d11be8f9475850c8cf6 https://www.encodeproject.org/files/ENCFF477TDU/@@download/ENCFF477TDU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF630XDG bigBed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF815VKQ 12906877 ENCODE Processing Pipeline 420cf37b8f3c12c2f5b7759e46339e79 https://www.encodeproject.org/files/ENCFF630XDG/@@download/ENCFF630XDG.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF381KWH bigBed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF477TDU 13091852 ENCODE Processing Pipeline adc58666f8c77524d80bdb531cbdd5aa https://www.encodeproject.org/files/ENCFF381KWH/@@download/ENCFF381KWH.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF065DAM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF808RWZ 1132052 ENCODE Processing Pipeline 62a04c5df7bc64d421073d62c4939461 https://www.encodeproject.org/files/ENCFF065DAM/@@download/ENCFF065DAM.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF534KIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF402BIZ 1077238 ENCODE Processing Pipeline d04468f5bc304f331f729af2495ece8a https://www.encodeproject.org/files/ENCFF534KIM/@@download/ENCFF534KIM.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF808RWZ bed narrowPeak optimal idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF234WBQ, ENCFF419RSJ, ENCFF477TDU, ENCFF815VKQ 542778 ENCODE Processing Pipeline fa13fe264c7e2c62f6e6023d08f3cdd9 https://www.encodeproject.org/files/ENCFF808RWZ/@@download/ENCFF808RWZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF402BIZ bed narrowPeak conservative idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF234WBQ, ENCFF419RSJ, ENCFF477TDU, ENCFF815VKQ 508196 ENCODE Processing Pipeline 29a9c8f74471bee8ff2878b405d92526 https://www.encodeproject.org/files/ENCFF402BIZ/@@download/ENCFF402BIZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF022WAB bigWig signal p-value ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF983PHR 654410971 ENCODE Processing Pipeline 3c1517eee7c5a344bf8e0e94de8f4bf9 https://www.encodeproject.org/files/ENCFF022WAB/@@download/ENCFF022WAB.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF568MCJ bigWig fold change over control ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF983PHR 588633000 ENCODE Processing Pipeline 40f5b63cda3b1fb711efa05a0883b972 https://www.encodeproject.org/files/ENCFF568MCJ/@@download/ENCFF568MCJ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF925WYW bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF983PHR 5774604 ENCODE Processing Pipeline 7b1cb45dd16f7fbfe612b1b25fdab223 https://www.encodeproject.org/files/ENCFF925WYW/@@download/ENCFF925WYW.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF295GEM bigWig signal p-value ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF159NGH, ENCFF864UEQ 590859411 ENCODE Processing Pipeline 49fb2633b63fa76c36e84a6f480e3191 https://www.encodeproject.org/files/ENCFF295GEM/@@download/ENCFF295GEM.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF236LGQ bigWig signal p-value ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF159NGH, ENCFF864UEQ, ENCFF983PHR 814724260 ENCODE Processing Pipeline eb006a51caccbf17b0c6175421bd5f12 https://www.encodeproject.org/files/ENCFF236LGQ/@@download/ENCFF236LGQ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF865LDB bigBed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF912FKQ 12903460 ENCODE Processing Pipeline 11d772a3f81dfe246da91984f897b1a6 https://www.encodeproject.org/files/ENCFF865LDB/@@download/ENCFF865LDB.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF045ASF bigWig fold change over control ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF159NGH, ENCFF864UEQ 529894377 ENCODE Processing Pipeline 8dff13b984e3b4123e0db4f3f452c68b https://www.encodeproject.org/files/ENCFF045ASF/@@download/ENCFF045ASF.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF912FKQ bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF159NGH, ENCFF864UEQ 6262075 ENCODE Processing Pipeline 95169f0673261acf640639a0818357cb https://www.encodeproject.org/files/ENCFF912FKQ/@@download/ENCFF912FKQ.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF431AIS bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF159NGH, ENCFF864UEQ, ENCFF983PHR 6724224 ENCODE Processing Pipeline 4ae6609d5b42256b100936f0869e255a https://www.encodeproject.org/files/ENCFF431AIS/@@download/ENCFF431AIS.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF786MUY bigWig fold change over control ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF159NGH, ENCFF864UEQ, ENCFF983PHR 895261854 ENCODE Processing Pipeline 40f51c15be5bdaf39054922f23615966 https://www.encodeproject.org/files/ENCFF786MUY/@@download/ENCFF786MUY.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF213MLL bigBed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF431AIS 13109473 ENCODE Processing Pipeline ba963e65a4b329dc57a2ae78c060b571 https://www.encodeproject.org/files/ENCFF213MLL/@@download/ENCFF213MLL.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF940PGC bigBed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF925WYW 13291733 ENCODE Processing Pipeline 4357ef2811e9d35630ab88622e48aa49 https://www.encodeproject.org/files/ENCFF940PGC/@@download/ENCFF940PGC.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF374ZCG bed narrowPeak optimal idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF431AIS, ENCFF912FKQ, ENCFF925WYW 548131 ENCODE Processing Pipeline 7fcebc7d804196dc801fd7220e7c96b9 https://www.encodeproject.org/files/ENCFF374ZCG/@@download/ENCFF374ZCG.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF046WMG bed narrowPeak conservative idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF431AIS, ENCFF912FKQ, ENCFF925WYW 508261 ENCODE Processing Pipeline 0659bbc5d0f39fada17088ffaad79d1d https://www.encodeproject.org/files/ENCFF046WMG/@@download/ENCFF046WMG.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF360ICX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF046WMG 1077767 ENCODE Processing Pipeline 59f4275037706a578bbfe0a856235506 https://www.encodeproject.org/files/ENCFF360ICX/@@download/ENCFF360ICX.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF109OHE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF374ZCG 1142540 ENCODE Processing Pipeline 48bae9f92d6fcf866f97f8a2906410e1 https://www.encodeproject.org/files/ENCFF109OHE/@@download/ENCFF109OHE.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF000NDL bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NDY 1792031318 Richard Myers, HAIB aebc22e2ba05c2fafb495bd56c713c35 https://www.encodeproject.org/files/ENCFF000NDL/@@download/ENCFF000NDL.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NDM bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NDV 1386114589 Richard Myers, HAIB 836a95ce3cb276961ac3f03917cd7345 https://www.encodeproject.org/files/ENCFF000NDM/@@download/ENCFF000NDM.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NDN bigBed broadPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TSZ 495978 Richard Myers, HAIB 9e8c74b5adc0123c951103d8156ac480 https://www.encodeproject.org/files/ENCFF000NDN/@@download/ENCFF000NDN.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NDO bigBed broadPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TTA 567143 Richard Myers, HAIB 0f5f520fc231ac7c46cd7016c7fab9d1 https://www.encodeproject.org/files/ENCFF000NDO/@@download/ENCFF000NDO.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NDQ bigWig raw signal ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 19634690 Richard Myers, HAIB 63032dd490ce3329c29862bf74089831 https://www.encodeproject.org/files/ENCFF000NDQ/@@download/ENCFF000NDQ.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF000NDR bigWig raw signal ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 26369750 Richard Myers, HAIB 3447a29dfc4271872e8f466447b5cbf7 https://www.encodeproject.org/files/ENCFF000NDR/@@download/ENCFF000NDR.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF000NDV fastq reads ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1377492162 Richard Myers, HAIB 83165aea9255779bfde44a17cc100e9b https://www.encodeproject.org/files/ENCFF000NDV/@@download/ENCFF000NDV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NDY fastq reads ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1770508114 Richard Myers, HAIB 8a903086a7e9b5045f1b785807c86e5e https://www.encodeproject.org/files/ENCFF000NDY/@@download/ENCFF000NDY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001TSZ bed broadPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 274175 Richard Myers, HAIB d6a3e565cdcee5690851a67182e65e99 https://www.encodeproject.org/files/ENCFF001TSZ/@@download/ENCFF001TSZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF001TTA bed broadPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 371350 Richard Myers, HAIB 71b39f80cbeff8329cec172a56e94b65 https://www.encodeproject.org/files/ENCFF001TTA/@@download/ENCFF001TTA.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF002CFU bed narrowPeak optimal idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 277807 ENCODE Consortium Analysis Working Group 76aa22412831088c081ae5917f94bc40 https://www.encodeproject.org/files/ENCFF002CFU/@@download/ENCFF002CFU.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF819CLC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFU 745479 ENCODE Consortium 8d0f246c1a36fb55de2b02221106f261 https://www.encodeproject.org/files/ENCFF819CLC/@@download/ENCFF819CLC.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF060SLW bam unfiltered alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NDV, ENCFF643CGH 1507800157 ENCODE Processing Pipeline 9c781be5120833603936d173042318b3 https://www.encodeproject.org/files/ENCFF060SLW/@@download/ENCFF060SLW.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF653BQI bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NDV, ENCFF643CGH 933551952 ENCODE Processing Pipeline 5d59234e2814a3c33ecbb66a562f0ee2 https://www.encodeproject.org/files/ENCFF653BQI/@@download/ENCFF653BQI.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF807YWR bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NDY, ENCFF643CGH 1138641488 ENCODE Processing Pipeline f893dd1d087a8a8aab83be6e85c629da https://www.encodeproject.org/files/ENCFF807YWR/@@download/ENCFF807YWR.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF561WPG bam unfiltered alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NDY, ENCFF643CGH 1952268381 ENCODE Processing Pipeline d3c77a0caa0234c88b1251c7df560612 https://www.encodeproject.org/files/ENCFF561WPG/@@download/ENCFF561WPG.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF867TSI bam unfiltered alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NDV, ENCFF807MUK 1503598550 ENCODE Processing Pipeline 513fe3eec7087efc995d270c362bfee5 https://www.encodeproject.org/files/ENCFF867TSI/@@download/ENCFF867TSI.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF507FFE bam unfiltered alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NDY, ENCFF807MUK 1947115166 ENCODE Processing Pipeline d5cd6de8bb5c2b3cc441ad23b21a7a69 https://www.encodeproject.org/files/ENCFF507FFE/@@download/ENCFF507FFE.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF515SHZ bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NDV, ENCFF807MUK 933678255 ENCODE Processing Pipeline 0eca7e4443808e2f73c31ad8b6233229 https://www.encodeproject.org/files/ENCFF515SHZ/@@download/ENCFF515SHZ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF158ZUT bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NDY, ENCFF807MUK 1138681082 ENCODE Processing Pipeline 51caa14cb784fefdea94cc8e2ca503bf https://www.encodeproject.org/files/ENCFF158ZUT/@@download/ENCFF158ZUT.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF834RBT bigWig signal p-value ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF807YWR 611133588 ENCODE Processing Pipeline d3843a007abd33fb1e62811761db5ab9 https://www.encodeproject.org/files/ENCFF834RBT/@@download/ENCFF834RBT.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF057XTI bigWig signal p-value ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF653BQI, ENCFF656HEF 677216246 ENCODE Processing Pipeline 7826611a33524b9f8d96fdcbc9f14ac2 https://www.encodeproject.org/files/ENCFF057XTI/@@download/ENCFF057XTI.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF892ZLP bigWig fold change over control ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF807YWR 544543056 ENCODE Processing Pipeline fe6e4aee50e11f3f592228e36523929f https://www.encodeproject.org/files/ENCFF892ZLP/@@download/ENCFF892ZLP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF961EXG bigWig signal p-value ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF653BQI, ENCFF656HEF, ENCFF807YWR 840694966 ENCODE Processing Pipeline 4faf47d1b33eff191be2bf070536ee54 https://www.encodeproject.org/files/ENCFF961EXG/@@download/ENCFF961EXG.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF838YIE bigWig fold change over control ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF653BQI, ENCFF656HEF 542714469 ENCODE Processing Pipeline 713796a4f95ecb98fa3f1f2ddb5c019c https://www.encodeproject.org/files/ENCFF838YIE/@@download/ENCFF838YIE.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF355REQ bigWig fold change over control ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF653BQI, ENCFF656HEF, ENCFF807YWR 882440251 ENCODE Processing Pipeline 413d399c67c48040f184b38f58e81166 https://www.encodeproject.org/files/ENCFF355REQ/@@download/ENCFF355REQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF890YST bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF807YWR 6295151 ENCODE Processing Pipeline cf99b6c92ffa76cbfb9c1da9a174c1fe https://www.encodeproject.org/files/ENCFF890YST/@@download/ENCFF890YST.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF411JQN bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF653BQI, ENCFF656HEF 6571089 ENCODE Processing Pipeline 5b8ea49fc4b3984173d70736417a2c32 https://www.encodeproject.org/files/ENCFF411JQN/@@download/ENCFF411JQN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF102BMN bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF653BQI, ENCFF656HEF, ENCFF807YWR 7030405 ENCODE Processing Pipeline 7f8482cde84ecbc1acbc64cb8b990848 https://www.encodeproject.org/files/ENCFF102BMN/@@download/ENCFF102BMN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF122WOY bigBed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF411JQN 12725304 ENCODE Processing Pipeline 6780440536fe562b700d4a0970e91412 https://www.encodeproject.org/files/ENCFF122WOY/@@download/ENCFF122WOY.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF107EWI bed narrowPeak optimal idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF102BMN, ENCFF411JQN, ENCFF419RSJ, ENCFF890YST 344851 ENCODE Processing Pipeline bb704226429809f98a724c8b959895be https://www.encodeproject.org/files/ENCFF107EWI/@@download/ENCFF107EWI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF978XAD bigBed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF890YST 12993453 ENCODE Processing Pipeline a6d99d23b9b7dab81839d97e47b26cd3 https://www.encodeproject.org/files/ENCFF978XAD/@@download/ENCFF978XAD.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF929GSB bigBed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF102BMN 12824357 ENCODE Processing Pipeline 0d99787ad711bc476e20616a4f2f55d6 https://www.encodeproject.org/files/ENCFF929GSB/@@download/ENCFF929GSB.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF015OEW bed narrowPeak conservative idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF102BMN, ENCFF411JQN, ENCFF419RSJ, ENCFF890YST 285232 ENCODE Processing Pipeline d76767727b0f4d1613a74d957d579b9b https://www.encodeproject.org/files/ENCFF015OEW/@@download/ENCFF015OEW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF654ZLS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF015OEW 653813 ENCODE Processing Pipeline a3c1090adf57c9d12a210e9399d149be https://www.encodeproject.org/files/ENCFF654ZLS/@@download/ENCFF654ZLS.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF780AQL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF107EWI 751133 ENCODE Processing Pipeline 735869a0bdf5264f55995c2f1667b9b3 https://www.encodeproject.org/files/ENCFF780AQL/@@download/ENCFF780AQL.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF402MSA bigWig signal p-value ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF158ZUT, ENCFF864UEQ 564191776 ENCODE Processing Pipeline 82c48c3e8fbe8b5315f66c6269317c9d https://www.encodeproject.org/files/ENCFF402MSA/@@download/ENCFF402MSA.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF911TRF bigWig fold change over control ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF158ZUT, ENCFF864UEQ 556033273 ENCODE Processing Pipeline 44c748a129b3e98c1c26d5bc0b03e2c8 https://www.encodeproject.org/files/ENCFF911TRF/@@download/ENCFF911TRF.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF885RYR bigWig signal p-value ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF515SHZ, ENCFF864UEQ 623990242 ENCODE Processing Pipeline 3d6b3671e334f42bf32fba089b20deb9 https://www.encodeproject.org/files/ENCFF885RYR/@@download/ENCFF885RYR.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF238RCS bigWig fold change over control ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF158ZUT, ENCFF515SHZ, ENCFF864UEQ 882122034 ENCODE Processing Pipeline d64da24910494f565d95f62c33480c0d https://www.encodeproject.org/files/ENCFF238RCS/@@download/ENCFF238RCS.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF446NQH bigWig signal p-value ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF158ZUT, ENCFF515SHZ, ENCFF864UEQ 840897315 ENCODE Processing Pipeline 99866f1b9eeccf43274652ad57b00178 https://www.encodeproject.org/files/ENCFF446NQH/@@download/ENCFF446NQH.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF229IGD bigWig fold change over control ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF515SHZ, ENCFF864UEQ 546407484 ENCODE Processing Pipeline b5dee42e95b8c1ae1f3697fb6a0c7002 https://www.encodeproject.org/files/ENCFF229IGD/@@download/ENCFF229IGD.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF151JBR bigBed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF792BHA 12972967 ENCODE Processing Pipeline 9ffd6a9548fd0a1b8db912255742b71e https://www.encodeproject.org/files/ENCFF151JBR/@@download/ENCFF151JBR.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF792BHA bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF158ZUT, ENCFF864UEQ 6317626 ENCODE Processing Pipeline 6601f4134aebaa475a1a9a0736510c47 https://www.encodeproject.org/files/ENCFF792BHA/@@download/ENCFF792BHA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF893FUU bigBed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF719IGT 12783969 ENCODE Processing Pipeline e452222babe4dfbe625bdae809f7d49d https://www.encodeproject.org/files/ENCFF893FUU/@@download/ENCFF893FUU.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF621APS bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF515SHZ, ENCFF864UEQ 6607489 ENCODE Processing Pipeline 6f520fce44fd1e0abc7a68dc3026de6c https://www.encodeproject.org/files/ENCFF621APS/@@download/ENCFF621APS.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF719IGT bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF158ZUT, ENCFF515SHZ, ENCFF864UEQ 6998054 ENCODE Processing Pipeline 0f60de7731124f024715e6aaf38fede8 https://www.encodeproject.org/files/ENCFF719IGT/@@download/ENCFF719IGT.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF275ZVD bigBed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF621APS 12764658 ENCODE Processing Pipeline e03594ff200ba4a216024df78d23c6f3 https://www.encodeproject.org/files/ENCFF275ZVD/@@download/ENCFF275ZVD.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF479RVS bed narrowPeak conservative idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF621APS, ENCFF719IGT, ENCFF792BHA 276233 ENCODE Processing Pipeline 1e109a50d839a78e04877580c704b6b1 https://www.encodeproject.org/files/ENCFF479RVS/@@download/ENCFF479RVS.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF197MEL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF479RVS 639197 ENCODE Processing Pipeline 528aef22e969581dee7113c2b5d305ed https://www.encodeproject.org/files/ENCFF197MEL/@@download/ENCFF197MEL.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF136RBA bed narrowPeak optimal idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF621APS, ENCFF719IGT, ENCFF792BHA 334443 ENCODE Processing Pipeline ca1ab14e6137d333433c3bb3c0d8b7bd https://www.encodeproject.org/files/ENCFF136RBA/@@download/ENCFF136RBA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF537TRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF136RBA 735224 ENCODE Processing Pipeline 4dda03dd179477075a2862aeee39e00d https://www.encodeproject.org/files/ENCFF537TRR/@@download/ENCFF537TRR.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NQE bam alignments ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NQP 1495758181 Richard Myers, HAIB 090a5f531ff9f73552240763879735e5 https://www.encodeproject.org/files/ENCFF000NQE/@@download/ENCFF000NQE.bam hg19 released biological replicates with identical biosample ENCFF000NQF bigBed broadPeak peaks ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVR 1352520 Richard Myers, HAIB cf862a9d3f272ae8f1d7d26409edcbd1 https://www.encodeproject.org/files/ENCFF000NQF/@@download/ENCFF000NQF.bigBed hg19 released biological replicates with identical biosample ENCFF000NQG bigBed broadPeak peaks ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVS 789103 Richard Myers, HAIB 91f73abc6546a7c771d7ab61ede62ae6 https://www.encodeproject.org/files/ENCFF000NQG/@@download/ENCFF000NQG.bigBed hg19 released biological replicates with identical biosample ENCFF000NQH bam alignments ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NQT 1379047009 Richard Myers, HAIB c0a2a2b31a788df3017cd651aa473f7d https://www.encodeproject.org/files/ENCFF000NQH/@@download/ENCFF000NQH.bam hg19 released biological replicates with identical biosample ENCFF000NQJ bigWig raw signal ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 135399967 Richard Myers, HAIB f5877d0170d17b13ea41e2edeb33120c https://www.encodeproject.org/files/ENCFF000NQJ/@@download/ENCFF000NQJ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NQK bigWig raw signal ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 133271813 Richard Myers, HAIB 4a0d86374a3f5dfc813274734bd7b922 https://www.encodeproject.org/files/ENCFF000NQK/@@download/ENCFF000NQK.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NQP fastq reads ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1575687672 Richard Myers, HAIB ef7727d844613894c7ff53e68c2c038a https://www.encodeproject.org/files/ENCFF000NQP/@@download/ENCFF000NQP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NQT fastq reads ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1386008387 Richard Myers, HAIB 5d162e8e9b98d8742243b83e1e81c0f1 https://www.encodeproject.org/files/ENCFF000NQT/@@download/ENCFF000NQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NQD/ released biological replicates with identical biosample ENCFF001TVR bed broadPeak peaks ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 726565 Richard Myers, HAIB f64eb082d2b8a1997287091d67425ac7 https://www.encodeproject.org/files/ENCFF001TVR/@@download/ENCFF001TVR.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVS bed broadPeak peaks ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 498942 Richard Myers, HAIB 33a10b55c1f735afde5372a4680bc1fb https://www.encodeproject.org/files/ENCFF001TVS/@@download/ENCFF001TVS.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF787CXJ bam unfiltered alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 100 ENCFF234SUV, ENCFF294HST, ENCFF807MUK 7163520272 ENCODE Processing Pipeline afd4d524e2afa878b6a9ee8fd94831a7 https://www.encodeproject.org/files/ENCFF787CXJ/@@download/ENCFF787CXJ.bam hg19 released antibody characterized with exemption ENCFF822ZYM bam unfiltered alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 100 ENCFF175BVH, ENCFF363OSM, ENCFF807MUK 6915830835 ENCODE Processing Pipeline d28327e0dc4e74d2c94c7fc62abe40ce https://www.encodeproject.org/files/ENCFF822ZYM/@@download/ENCFF822ZYM.bam hg19 released antibody characterized with exemption ENCFF294HST fastq reads ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 1 100 paired-ended 1 ENCFF234SUV 3238091547 Michael Snyder, Stanford 3e68b61496097554193974e94f8e9f77 SRA:SRR6212639 https://www.encodeproject.org/files/ENCFF294HST/@@download/ENCFF294HST.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released antibody characterized with exemption ENCFF234SUV fastq reads ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 1 100 paired-ended 2 ENCFF294HST 3325907072 Michael Snyder, Stanford a707b55dd33f3cb2bfa2993f2507e34a SRA:SRR6212639 https://www.encodeproject.org/files/ENCFF234SUV/@@download/ENCFF234SUV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released antibody characterized with exemption ENCFF363OSM fastq reads ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 1 100 paired-ended 1 ENCFF175BVH 3092246987 Michael Snyder, Stanford 261efa587f25a47de78ba21e23761ac5 SRA:SRR6212640 https://www.encodeproject.org/files/ENCFF363OSM/@@download/ENCFF363OSM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released antibody characterized with exemption ENCFF175BVH fastq reads ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 1 100 paired-ended 2 ENCFF363OSM 3181763502 Michael Snyder, Stanford dd8777fe1d73c5c32b964b896afc0b62 SRA:SRR6212640 https://www.encodeproject.org/files/ENCFF175BVH/@@download/ENCFF175BVH.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released antibody characterized with exemption ENCFF694UQR bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF234SUV, ENCFF294HST, ENCFF807MUK 5910549848 ENCODE Processing Pipeline a9d84818b23ba39ff9bba5a886da5e6a https://www.encodeproject.org/files/ENCFF694UQR/@@download/ENCFF694UQR.bam hg19 released antibody characterized with exemption ENCFF856DSG bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF175BVH, ENCFF363OSM, ENCFF807MUK 5682901118 ENCODE Processing Pipeline de5fd93526ceef23dd020576f946fdac https://www.encodeproject.org/files/ENCFF856DSG/@@download/ENCFF856DSG.bam hg19 released antibody characterized with exemption ENCFF839WYK bigWig signal p-value ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF449NNE, ENCFF856DSG 1263633703 ENCODE Processing Pipeline 55154f6a8cb32c08916e12a5709eca04 https://www.encodeproject.org/files/ENCFF839WYK/@@download/ENCFF839WYK.bigWig hg19 released antibody characterized with exemption ENCFF827BKV bigWig signal p-value ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF449NNE, ENCFF694UQR, ENCFF999EQI 1455443350 ENCODE Processing Pipeline a993775ceece71bc0b30817b6bacca2b https://www.encodeproject.org/files/ENCFF827BKV/@@download/ENCFF827BKV.bigWig hg19 released antibody characterized with exemption ENCFF567QTF bigWig signal p-value ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF449NNE, ENCFF694UQR, ENCFF856DSG, ENCFF999EQI 1937435776 ENCODE Processing Pipeline e3898423aedb5d0e3ddd390cbc7b2022 https://www.encodeproject.org/files/ENCFF567QTF/@@download/ENCFF567QTF.bigWig hg19 released antibody characterized with exemption ENCFF478VII bigWig fold change over control ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF449NNE, ENCFF856DSG 1328305297 ENCODE Processing Pipeline d3b76732f55a01107f660035e30b8dde https://www.encodeproject.org/files/ENCFF478VII/@@download/ENCFF478VII.bigWig hg19 released antibody characterized with exemption ENCFF679JZL bigWig fold change over control ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF449NNE, ENCFF694UQR, ENCFF999EQI 1739007242 ENCODE Processing Pipeline 3a0f3e3bd79567250a462214feb7daa7 https://www.encodeproject.org/files/ENCFF679JZL/@@download/ENCFF679JZL.bigWig hg19 released antibody characterized with exemption ENCFF229UZF bigBed narrowPeak optimal idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF501KPU 372615 ENCODE Processing Pipeline 6ec5dd6061d37aa191265b10a1d53d28 https://www.encodeproject.org/files/ENCFF229UZF/@@download/ENCFF229UZF.bigBed hg19 released antibody characterized with exemption ENCFF923PXY bigBed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF303DTM 11386006 ENCODE Processing Pipeline 44e0c828ed93ff50773f90bfba75f308 https://www.encodeproject.org/files/ENCFF923PXY/@@download/ENCFF923PXY.bigBed hg19 released antibody characterized with exemption ENCFF501KPU bed narrowPeak optimal idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF001TDO, ENCFF303DTM, ENCFF570HWZ, ENCFF592IDM 172257 ENCODE Processing Pipeline 95e02ff01b0c2f30969d7deb12d46698 https://www.encodeproject.org/files/ENCFF501KPU/@@download/ENCFF501KPU.bed.gz hg19 released antibody characterized with exemption ENCFF651HGG bigWig fold change over control ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF449NNE, ENCFF694UQR, ENCFF856DSG, ENCFF999EQI 2272278734 ENCODE Processing Pipeline a86a24c2bebf47bcdfcf3aec475660ee https://www.encodeproject.org/files/ENCFF651HGG/@@download/ENCFF651HGG.bigWig hg19 released antibody characterized with exemption ENCFF614ZJQ bigBed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF592IDM 11435770 ENCODE Processing Pipeline ab1cf6ac0efdde6fe2610ef0bf71e9a4 https://www.encodeproject.org/files/ENCFF614ZJQ/@@download/ENCFF614ZJQ.bigBed hg19 released antibody characterized with exemption ENCFF052PCM bigBed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF570HWZ 11409494 ENCODE Processing Pipeline c326208f11fa3b4eb760d6f9d53d6874 https://www.encodeproject.org/files/ENCFF052PCM/@@download/ENCFF052PCM.bigBed hg19 released antibody characterized with exemption ENCFF268BRA bigBed narrowPeak conservative idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF304CJQ 295874 ENCODE Processing Pipeline 09728a0a38aa8b65297fa9f949e4f3a5 https://www.encodeproject.org/files/ENCFF268BRA/@@download/ENCFF268BRA.bigBed hg19 released antibody characterized with exemption ENCFF303DTM bed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF449NNE, ENCFF856DSG 6459372 ENCODE Processing Pipeline cbd2b64e73aa3ab12c57e224265f0f13 https://www.encodeproject.org/files/ENCFF303DTM/@@download/ENCFF303DTM.bed.gz hg19 released antibody characterized with exemption ENCFF592IDM bed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF449NNE, ENCFF694UQR, ENCFF999EQI 6710482 ENCODE Processing Pipeline df57d44afb44568d6412519cbe7a8938 https://www.encodeproject.org/files/ENCFF592IDM/@@download/ENCFF592IDM.bed.gz hg19 released antibody characterized with exemption ENCFF570HWZ bed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF449NNE, ENCFF694UQR, ENCFF856DSG, ENCFF999EQI 7204802 ENCODE Processing Pipeline fae93b51a8d23616b89da65863190ff6 https://www.encodeproject.org/files/ENCFF570HWZ/@@download/ENCFF570HWZ.bed.gz hg19 released antibody characterized with exemption ENCFF304CJQ bed narrowPeak conservative idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF001TDO, ENCFF303DTM, ENCFF570HWZ, ENCFF592IDM 122869 ENCODE Processing Pipeline 159597b715339937fb8fe5965b5bb23d https://www.encodeproject.org/files/ENCFF304CJQ/@@download/ENCFF304CJQ.bed.gz hg19 released antibody characterized with exemption ENCFF616NXW bam unfiltered alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 100 ENCFF175BVH, ENCFF363OSM, ENCFF643CGH 6929892373 ENCODE Processing Pipeline 434df1194bec03c733242400407918f9 https://www.encodeproject.org/files/ENCFF616NXW/@@download/ENCFF616NXW.bam GRCh38 released antibody characterized with exemption ENCFF014WCS bam unfiltered alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 100 ENCFF234SUV, ENCFF294HST, ENCFF643CGH 7178102782 ENCODE Processing Pipeline 3e0a5df65f83741c8813886a60a1b9f8 https://www.encodeproject.org/files/ENCFF014WCS/@@download/ENCFF014WCS.bam GRCh38 released antibody characterized with exemption ENCFF209IIA bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 100 ENCFF175BVH, ENCFF363OSM, ENCFF643CGH 5699459447 ENCODE Processing Pipeline fe559165654ff4b101727e07b44e081c https://www.encodeproject.org/files/ENCFF209IIA/@@download/ENCFF209IIA.bam GRCh38 released antibody characterized with exemption ENCFF317VSS bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 100 ENCFF234SUV, ENCFF294HST, ENCFF643CGH 5928599666 ENCODE Processing Pipeline bee0207a9ec4ab14234ed29f7f0cb60a https://www.encodeproject.org/files/ENCFF317VSS/@@download/ENCFF317VSS.bam GRCh38 released antibody characterized with exemption ENCFF327GSG bigWig signal p-value ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF190EPQ, ENCFF209IIA 1319854547 ENCODE Processing Pipeline 7688c3630f122af1d1e645a5a3f7291f https://www.encodeproject.org/files/ENCFF327GSG/@@download/ENCFF327GSG.bigWig GRCh38 released antibody characterized with exemption ENCFF966ZFL bigWig signal p-value ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF190EPQ, ENCFF317VSS, ENCFF950AXC 1681514123 ENCODE Processing Pipeline 7ca0a6f940a394b1561d4af2aed945f3 https://www.encodeproject.org/files/ENCFF966ZFL/@@download/ENCFF966ZFL.bigWig GRCh38 released antibody characterized with exemption ENCFF561ZPF bigWig signal p-value ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF190EPQ, ENCFF209IIA, ENCFF317VSS, ENCFF950AXC 1850353013 ENCODE Processing Pipeline da9bafd6e016b0f0a92fe259f727114b https://www.encodeproject.org/files/ENCFF561ZPF/@@download/ENCFF561ZPF.bigWig GRCh38 released antibody characterized with exemption ENCFF207DQS bigWig fold change over control ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF190EPQ, ENCFF209IIA 1333335356 ENCODE Processing Pipeline ff1ab709be93f0b1b867bd5521290177 https://www.encodeproject.org/files/ENCFF207DQS/@@download/ENCFF207DQS.bigWig GRCh38 released antibody characterized with exemption ENCFF141YVC bigWig fold change over control ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF190EPQ, ENCFF317VSS, ENCFF950AXC 1742113478 ENCODE Processing Pipeline e7736e894f45b03272b0f72cd726ced9 https://www.encodeproject.org/files/ENCFF141YVC/@@download/ENCFF141YVC.bigWig GRCh38 released antibody characterized with exemption ENCFF910ZUF bigWig fold change over control ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF190EPQ, ENCFF209IIA, ENCFF317VSS, ENCFF950AXC 2275989358 ENCODE Processing Pipeline 6392a149f425760a5645bf3467c662e1 https://www.encodeproject.org/files/ENCFF910ZUF/@@download/ENCFF910ZUF.bigWig GRCh38 released antibody characterized with exemption ENCFF006GDN bed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF190EPQ, ENCFF317VSS, ENCFF950AXC 6567644 ENCODE Processing Pipeline 5b5d87719ce17ca1c49a3462cae8ce61 https://www.encodeproject.org/files/ENCFF006GDN/@@download/ENCFF006GDN.bed.gz GRCh38 released antibody characterized with exemption ENCFF670OQN bed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF190EPQ, ENCFF209IIA 6344896 ENCODE Processing Pipeline 5a1230cb8468fb7736da2c878a01ac9e https://www.encodeproject.org/files/ENCFF670OQN/@@download/ENCFF670OQN.bed.gz GRCh38 released antibody characterized with exemption ENCFF797QWV bed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF190EPQ, ENCFF209IIA, ENCFF317VSS, ENCFF950AXC 7177279 ENCODE Processing Pipeline 24c59a369ebee02c23d048800a37cc3e https://www.encodeproject.org/files/ENCFF797QWV/@@download/ENCFF797QWV.bed.gz GRCh38 released antibody characterized with exemption ENCFF983TGU bigBed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF670OQN 11384564 ENCODE Processing Pipeline d97812bda1df53c06b5ccc57b95872e1 https://www.encodeproject.org/files/ENCFF983TGU/@@download/ENCFF983TGU.bigBed GRCh38 released antibody characterized with exemption ENCFF051PCK bigBed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF006GDN 11426456 ENCODE Processing Pipeline cdfad104fa3b0a20a3646bd5a02dfdf6 https://www.encodeproject.org/files/ENCFF051PCK/@@download/ENCFF051PCK.bigBed GRCh38 released antibody characterized with exemption ENCFF717JIZ bigBed narrowPeak peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF797QWV 11416576 ENCODE Processing Pipeline c6f3357b79866f9f62718d8655ecef67 https://www.encodeproject.org/files/ENCFF717JIZ/@@download/ENCFF717JIZ.bigBed GRCh38 released antibody characterized with exemption ENCFF579HZW bed narrowPeak conservative idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF006GDN, ENCFF419RSJ, ENCFF670OQN, ENCFF797QWV 126238 ENCODE Processing Pipeline 4e9f0af8b9b327f1026c8283e90350c0 https://www.encodeproject.org/files/ENCFF579HZW/@@download/ENCFF579HZW.bed.gz GRCh38 released antibody characterized with exemption ENCFF029UJC bed narrowPeak optimal idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF006GDN, ENCFF419RSJ, ENCFF670OQN, ENCFF797QWV 175364 ENCODE Processing Pipeline fb4b851272fc7628f524eef7f2fafd13 https://www.encodeproject.org/files/ENCFF029UJC/@@download/ENCFF029UJC.bed.gz GRCh38 released antibody characterized with exemption ENCFF040ZAS bigBed narrowPeak optimal idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF029UJC 382113 ENCODE Processing Pipeline a5fcb28f8c5e98dbe304c1098668b8a9 https://www.encodeproject.org/files/ENCFF040ZAS/@@download/ENCFF040ZAS.bigBed GRCh38 released antibody characterized with exemption ENCFF313UFT bigBed narrowPeak conservative idr thresholded peaks ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3, 4 ENCFF579HZW 307279 ENCODE Processing Pipeline 9c2a80fcd88b8ee3788a6180c9663fa1 https://www.encodeproject.org/files/ENCFF313UFT/@@download/ENCFF313UFT.bigBed GRCh38 released antibody characterized with exemption ENCFF000YQX bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YRO 333305358 Michael Snyder, Stanford d8edc1f150b626f3ad5f2d74c2b45fe5 https://www.encodeproject.org/files/ENCFF000YQX/@@download/ENCFF000YQX.bam hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YQY bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YSL 221706690 Michael Snyder, Stanford 772b800ca5dc1e05e7a1cb6d41f1be15 https://www.encodeproject.org/files/ENCFF000YQY/@@download/ENCFF000YQY.bam hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YQZ bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNK 237033 Michael Snyder, Stanford bb17d475c1565fc9b858d9f80c140f80 https://www.encodeproject.org/files/ENCFF000YQZ/@@download/ENCFF000YQZ.bigBed hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YRD bigWig signal ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 352223461 Michael Snyder, Stanford 7be76d95b3ed0a30512fa8731342e7d6 https://www.encodeproject.org/files/ENCFF000YRD/@@download/ENCFF000YRD.bigWig hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YRO fastq reads ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 981691497 Michael Snyder, Stanford 2e94c2ee92e62e4b5f727cc88c7fe548 https://www.encodeproject.org/files/ENCFF000YRO/@@download/ENCFF000YRO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released borderline replicate concordance, low read length, control low read depth, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YSL fastq reads ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 330375331 Michael Snyder, Stanford 92016110670166f12aa1a86f5afa0a8a https://www.encodeproject.org/files/ENCFF000YSL/@@download/ENCFF000YSL.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VNK bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 62876 Michael Snyder, Stanford 61e18337bdb14560478c340a0c5ff88f https://www.encodeproject.org/files/ENCFF001VNK/@@download/ENCFF001VNK.bed.gz hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CWV bed narrowPeak optimal idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 35503 ENCODE Consortium Analysis Working Group fde2ede3ff6eb70e03a7d29c4f98aa0f https://www.encodeproject.org/files/ENCFF002CWV/@@download/ENCFF002CWV.bed.gz hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF196TNH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWV 180209 ENCODE Consortium 9d2ba56f119b9fd580ebc7e7ed4d3977 https://www.encodeproject.org/files/ENCFF196TNH/@@download/ENCFF196TNH.bigBed hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF114FXV bigWig fold change over control ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF703RUQ 238330953 ENCODE Processing Pipeline 83da6cb6dba6595ca8c3c19bc628ed74 https://www.encodeproject.org/files/ENCFF114FXV/@@download/ENCFF114FXV.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF445PFM bigWig fold change over control ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF987HMV 111988386 ENCODE Processing Pipeline 63d447261bc11ca09606c17263bde3ee https://www.encodeproject.org/files/ENCFF445PFM/@@download/ENCFF445PFM.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF468TKO bigWig fold change over control ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF703RUQ, ENCFF987HMV 319024181 ENCODE Processing Pipeline 58d5fa8b6a63ea7c04b9f688225ffca5 https://www.encodeproject.org/files/ENCFF468TKO/@@download/ENCFF468TKO.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF287QAX bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF219ASD 2505235 ENCODE Processing Pipeline 405bf835935edaf768c84c70aa9d85dd https://www.encodeproject.org/files/ENCFF287QAX/@@download/ENCFF287QAX.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF256GYM bed narrowPeak conservative idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF219ASD, ENCFF467GRI, ENCFF879FJY 17204 ENCODE Processing Pipeline 819dd02b5e1b17baf83f4d5b80316bc8 https://www.encodeproject.org/files/ENCFF256GYM/@@download/ENCFF256GYM.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF701ZUY bigWig signal p-value ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF703RUQ 313989885 ENCODE Processing Pipeline d30c623e9f23e8e8fe8a106dd929ce5d https://www.encodeproject.org/files/ENCFF701ZUY/@@download/ENCFF701ZUY.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF701XOE bigWig signal p-value ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF987HMV 226719141 ENCODE Processing Pipeline 5a8900fdde0fc8a1cf74e736faa7474c https://www.encodeproject.org/files/ENCFF701XOE/@@download/ENCFF701XOE.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF467GRI bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF703RUQ 3615122 ENCODE Processing Pipeline dc0cfa0a67c7c5b32f08bf16d2422fc9 https://www.encodeproject.org/files/ENCFF467GRI/@@download/ENCFF467GRI.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF414XRS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF730RUF 87424 ENCODE Processing Pipeline f1eceb1b4b28ffe726d8c97aeeeaea09 https://www.encodeproject.org/files/ENCFF414XRS/@@download/ENCFF414XRS.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF894CFG bigWig signal p-value ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF703RUQ, ENCFF987HMV 318545964 ENCODE Processing Pipeline decb6e08d23fb196c0454043be9059c3 https://www.encodeproject.org/files/ENCFF894CFG/@@download/ENCFF894CFG.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF752QCM bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF467GRI 7549021 ENCODE Processing Pipeline dcc056c6725c30819aa05a63541f5eb9 https://www.encodeproject.org/files/ENCFF752QCM/@@download/ENCFF752QCM.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF198QMT bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF879FJY 10124335 ENCODE Processing Pipeline e25eb6b04409e1dc4a7265585dde3ef5 https://www.encodeproject.org/files/ENCFF198QMT/@@download/ENCFF198QMT.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF396XRA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF256GYM 72213 ENCODE Processing Pipeline 7c110aab7ac9c5121afd22420a5637f1 https://www.encodeproject.org/files/ENCFF396XRA/@@download/ENCFF396XRA.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF730RUF bed narrowPeak optimal idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF219ASD, ENCFF467GRI, ENCFF879FJY 28306 ENCODE Processing Pipeline a6f5b7194e601a38cffb1e0c847da96c https://www.encodeproject.org/files/ENCFF730RUF/@@download/ENCFF730RUF.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF703RUQ bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YRO, ENCFF807MUK 519909086 ENCODE Processing Pipeline 33d8ce5a4026c8a02e033acf39c660d6 https://www.encodeproject.org/files/ENCFF703RUQ/@@download/ENCFF703RUQ.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF987HMV bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YSL, ENCFF807MUK 245949919 ENCODE Processing Pipeline c5556c8f6ee39156cbc3fc9c9b2b4fd2 https://www.encodeproject.org/files/ENCFF987HMV/@@download/ENCFF987HMV.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF408WDT bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YSL, ENCFF643CGH 245631124 ENCODE Processing Pipeline dc2245297e525a118531f2d639fa7e10 https://www.encodeproject.org/files/ENCFF408WDT/@@download/ENCFF408WDT.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF309IQN bam unfiltered alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YSL, ENCFF643CGH 425258386 ENCODE Processing Pipeline bbd065c1c106527c044bbfe5bf7bb625 https://www.encodeproject.org/files/ENCFF309IQN/@@download/ENCFF309IQN.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF842WRL bam unfiltered alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YSL, ENCFF807MUK 424106027 ENCODE Processing Pipeline e8ec4b9f8914dac59a3555ee06490520 https://www.encodeproject.org/files/ENCFF842WRL/@@download/ENCFF842WRL.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF155HUF bam unfiltered alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YRO, ENCFF807MUK 980395573 ENCODE Processing Pipeline 402344e1f68cd8406e76a52ac526a25b https://www.encodeproject.org/files/ENCFF155HUF/@@download/ENCFF155HUF.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF323VLM bam unfiltered alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YRO, ENCFF643CGH 983884939 ENCODE Processing Pipeline b00a914c0d6774507f3eef3b980237ce https://www.encodeproject.org/files/ENCFF323VLM/@@download/ENCFF323VLM.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF424IRC bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YRO, ENCFF643CGH 519320804 ENCODE Processing Pipeline c36a60dbadc68c68beea314d25144441 https://www.encodeproject.org/files/ENCFF424IRC/@@download/ENCFF424IRC.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF444NDO bigWig signal p-value ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF424IRC, ENCFF767FSP 282518401 ENCODE Processing Pipeline 30f1dfde6b407c918ea62b7eab000cfa https://www.encodeproject.org/files/ENCFF444NDO/@@download/ENCFF444NDO.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF922KIS bigWig signal p-value ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408WDT, ENCFF767FSP 282732441 ENCODE Processing Pipeline 0f9d3093a41e2d7c0141053a1dad34c6 https://www.encodeproject.org/files/ENCFF922KIS/@@download/ENCFF922KIS.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF532JZZ bigWig signal p-value ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408WDT, ENCFF424IRC, ENCFF767FSP 323212589 ENCODE Processing Pipeline f4f8a7359d5e5856252598ff797a7545 https://www.encodeproject.org/files/ENCFF532JZZ/@@download/ENCFF532JZZ.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF585PVX bigWig fold change over control ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF424IRC, ENCFF767FSP 235276034 ENCODE Processing Pipeline b904eaa8eed0e48bcde47118f6c30ed8 https://www.encodeproject.org/files/ENCFF585PVX/@@download/ENCFF585PVX.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF288CBF bigWig fold change over control ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408WDT, ENCFF767FSP 111379969 ENCODE Processing Pipeline 2f4c2bb3a980a7d76be63368884d8140 https://www.encodeproject.org/files/ENCFF288CBF/@@download/ENCFF288CBF.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF918SEG bigWig fold change over control ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408WDT, ENCFF424IRC, ENCFF767FSP 324445388 ENCODE Processing Pipeline cd17e57491bcaf5f786e5e45e76afff7 https://www.encodeproject.org/files/ENCFF918SEG/@@download/ENCFF918SEG.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF219ASD bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF987HMV 1312157 ENCODE Processing Pipeline ba4142a08406d6848b8a81ea3f408093 https://www.encodeproject.org/files/ENCFF219ASD/@@download/ENCFF219ASD.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF879FJY bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF703RUQ, ENCFF987HMV 3968756 ENCODE Processing Pipeline 6b8025ab93e2ea417d308144f5921a3f https://www.encodeproject.org/files/ENCFF879FJY/@@download/ENCFF879FJY.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF031DNM bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF424IRC, ENCFF767FSP 3615253 ENCODE Processing Pipeline a234f6f136cb231e9cd11036e0ec0593 https://www.encodeproject.org/files/ENCFF031DNM/@@download/ENCFF031DNM.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF559DAP bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408WDT, ENCFF767FSP 1309496 ENCODE Processing Pipeline 356bc0f3f02a93ed3434d51d03affa80 https://www.encodeproject.org/files/ENCFF559DAP/@@download/ENCFF559DAP.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF791AFK bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408WDT, ENCFF424IRC, ENCFF767FSP 3969537 ENCODE Processing Pipeline 68ed598dbee5fe56e275afed7b300afe https://www.encodeproject.org/files/ENCFF791AFK/@@download/ENCFF791AFK.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF398EPO bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF031DNM 7556813 ENCODE Processing Pipeline cfc36ff1b75680eb3693ccd1d2e750f6 https://www.encodeproject.org/files/ENCFF398EPO/@@download/ENCFF398EPO.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF006RQP bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559DAP 2497462 ENCODE Processing Pipeline f67480a82614ea01ea25af7a186e54d6 https://www.encodeproject.org/files/ENCFF006RQP/@@download/ENCFF006RQP.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF710XYY bed narrowPeak conservative idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF031DNM, ENCFF419RSJ, ENCFF559DAP, ENCFF791AFK 17475 ENCODE Processing Pipeline ce40ea051561bfde93605e70e4b46a0f https://www.encodeproject.org/files/ENCFF710XYY/@@download/ENCFF710XYY.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF604RIZ bigBed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF791AFK 10127158 ENCODE Processing Pipeline 0e26d4a44a1749bd84c3abd953a700d8 https://www.encodeproject.org/files/ENCFF604RIZ/@@download/ENCFF604RIZ.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF223RDF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710XYY 72674 ENCODE Processing Pipeline 0bd1e6e7126704597d8d7389f2ac834d https://www.encodeproject.org/files/ENCFF223RDF/@@download/ENCFF223RDF.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF938NBD bed narrowPeak optimal idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF031DNM, ENCFF419RSJ, ENCFF559DAP, ENCFF791AFK 28320 ENCODE Processing Pipeline 84e979cfdb944d58bb9a920cf52161ed https://www.encodeproject.org/files/ENCFF938NBD/@@download/ENCFF938NBD.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF836JCP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF938NBD 87814 ENCODE Processing Pipeline 5b7d6418ae7ed9f420a17c310e5e8a04 https://www.encodeproject.org/files/ENCFF836JCP/@@download/ENCFF836JCP.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000QOJ bam alignments ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QOV 841849016 Richard Myers, HAIB e448bb6ef8983b6cb77542ed6052b88b https://www.encodeproject.org/files/ENCFF000QOJ/@@download/ENCFF000QOJ.bam hg19 released biological replicates with identical biosample ENCFF000QOK bigBed broadPeak peaks ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNF 737674 Richard Myers, HAIB 01d122b1df16fac30dfec6d1bfbb09d3 https://www.encodeproject.org/files/ENCFF000QOK/@@download/ENCFF000QOK.bigBed hg19 released biological replicates with identical biosample ENCFF000QOL bigBed broadPeak peaks ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNG 391612 Richard Myers, HAIB 7a60c68f05b1770821d4f7d99f993f83 https://www.encodeproject.org/files/ENCFF000QOL/@@download/ENCFF000QOL.bigBed hg19 released biological replicates with identical biosample ENCFF000QOM bam alignments ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QOY 1680803929 Richard Myers, HAIB 105ed54f58edcdb519171d8f7b1d50e6 https://www.encodeproject.org/files/ENCFF000QOM/@@download/ENCFF000QOM.bam hg19 released biological replicates with identical biosample ENCFF000QOO bigWig raw signal ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 209478007 Richard Myers, HAIB dbfda2aea04baffc7dcbd0242cdae04f https://www.encodeproject.org/files/ENCFF000QOO/@@download/ENCFF000QOO.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QOP bigWig raw signal ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 104457460 Richard Myers, HAIB 802da9a5b606f3bceec3877b3aae4f67 https://www.encodeproject.org/files/ENCFF000QOP/@@download/ENCFF000QOP.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QOV fastq reads ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 853484296 Richard Myers, HAIB 94d60d1be103c0651d083d50219d6c8c https://www.encodeproject.org/files/ENCFF000QOV/@@download/ENCFF000QOV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQK/ released biological replicates with identical biosample ENCFF000QOY fastq reads ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1824216730 Richard Myers, HAIB 633b75547e1e366870d4d0afeef918fc https://www.encodeproject.org/files/ENCFF000QOY/@@download/ENCFF000QOY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UNF bed broadPeak peaks ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 497667 Richard Myers, HAIB ed38658d476c7a47956503c41f3f8070 https://www.encodeproject.org/files/ENCFF001UNF/@@download/ENCFF001UNF.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNG bed broadPeak peaks ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 202710 Richard Myers, HAIB ab0f810e5026d652c64ae6efbe6577fd https://www.encodeproject.org/files/ENCFF001UNG/@@download/ENCFF001UNG.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000YPI fastq reads ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 611296990 Sherman Weissman, Yale 42e1435ddff35f6133dbd8384e37583e https://www.encodeproject.org/files/ENCFF000YPI/@@download/ENCFF000YPI.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPJ fastq reads ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 608955614 Sherman Weissman, Yale d07e36412c97ff92bfaaba96e8c00872 https://www.encodeproject.org/files/ENCFF000YPJ/@@download/ENCFF000YPJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZR bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPI 802371806 Sherman Weissman, Yale a7d9277447dd724bb7a21d510dfa1256 https://www.encodeproject.org/files/ENCFF000YZR/@@download/ENCFF000YZR.bam hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZU bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOU 100701 Sherman Weissman, Yale 20e136fc38961ae106a4cd95e4981852 https://www.encodeproject.org/files/ENCFF000YZU/@@download/ENCFF000YZU.bigBed hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZV bigWig signal ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 343934342 Sherman Weissman, Yale 054fdc4e5f2ed73506875204343aadfa https://www.encodeproject.org/files/ENCFF000YZV/@@download/ENCFF000YZV.bigWig hg19 archived control low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZW bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPJ 763292037 Sherman Weissman, Yale 5b142d0df3fbabcc44dd3f7fdad79127 https://www.encodeproject.org/files/ENCFF000YZW/@@download/ENCFF000YZW.bam hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOU bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 9245 Sherman Weissman, Yale 393ddc6c51b4af7c63d36664c0020a0f https://www.encodeproject.org/files/ENCFF001VOU/@@download/ENCFF001VOU.bed.gz hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CYC bed narrowPeak optimal idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 37650 ENCODE Consortium Analysis Working Group bb6587b53d0ad228531645c844e82661 https://www.encodeproject.org/files/ENCFF002CYC/@@download/ENCFF002CYC.bed.gz hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF548RAO bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYC 152373 ENCODE Consortium cae54e5674f7ec1d42a20f051c933125 https://www.encodeproject.org/files/ENCFF548RAO/@@download/ENCFF548RAO.bigBed hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF719TZE bam unfiltered alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPI, ENCFF643CGH 806370813 ENCODE Processing Pipeline 28838890cb63373d13aefe2cd9c59c77 https://www.encodeproject.org/files/ENCFF719TZE/@@download/ENCFF719TZE.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF089XMI bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPI, ENCFF643CGH 321446364 ENCODE Processing Pipeline 58ed0509c198f7cc1b6b78bac4af5ca8 https://www.encodeproject.org/files/ENCFF089XMI/@@download/ENCFF089XMI.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF049QLA bam unfiltered alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPJ, ENCFF807MUK 763798136 ENCODE Processing Pipeline 424a23db4f1cccf8ea108c3567c7219d https://www.encodeproject.org/files/ENCFF049QLA/@@download/ENCFF049QLA.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF636ISQ bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPJ, ENCFF807MUK 259788558 ENCODE Processing Pipeline 438e61d5e9f744d17eb806ecc405dbf2 https://www.encodeproject.org/files/ENCFF636ISQ/@@download/ENCFF636ISQ.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF637WLB bam unfiltered alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPI, ENCFF807MUK 803370909 ENCODE Processing Pipeline 4092ae3d0e40210ef4f2386c4d26c863 https://www.encodeproject.org/files/ENCFF637WLB/@@download/ENCFF637WLB.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF457SCP bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPI, ENCFF807MUK 321840886 ENCODE Processing Pipeline 4f01a3e97009032300a1c0208eeb69f0 https://www.encodeproject.org/files/ENCFF457SCP/@@download/ENCFF457SCP.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF263PLG bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPJ, ENCFF643CGH 259462570 ENCODE Processing Pipeline 12078df06f1d3d9af7bd0f2529dcff5d https://www.encodeproject.org/files/ENCFF263PLG/@@download/ENCFF263PLG.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF333RBO bam unfiltered alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPJ, ENCFF643CGH 765439411 ENCODE Processing Pipeline c7d4304e2960bcbaacb671a3f6667e07 https://www.encodeproject.org/files/ENCFF333RBO/@@download/ENCFF333RBO.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF207KLI bigWig signal p-value ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF457SCP, ENCFF998GMZ 243575216 ENCODE Processing Pipeline 557a4a60c2bb5e23f9acd43e89ba1d5e https://www.encodeproject.org/files/ENCFF207KLI/@@download/ENCFF207KLI.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF967SKX bigWig signal p-value ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF457SCP, ENCFF636ISQ, ENCFF998GMZ 286727723 ENCODE Processing Pipeline ef284d9a39fb09188d4e294baa156991 https://www.encodeproject.org/files/ENCFF967SKX/@@download/ENCFF967SKX.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF889EDK bigWig signal p-value ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF636ISQ, ENCFF998GMZ 235077167 ENCODE Processing Pipeline 0c18ede2200b7ecd3cdc39fd9f7a8d5c https://www.encodeproject.org/files/ENCFF889EDK/@@download/ENCFF889EDK.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF676CZF bigWig fold change over control ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF457SCP, ENCFF998GMZ 154032093 ENCODE Processing Pipeline 699872aea40f8205a36c20f66f8cdbf8 https://www.encodeproject.org/files/ENCFF676CZF/@@download/ENCFF676CZF.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF346XAR bigWig fold change over control ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF636ISQ, ENCFF998GMZ 125993561 ENCODE Processing Pipeline 5f97bc395a1b2be6c0440f534a47a34b https://www.encodeproject.org/files/ENCFF346XAR/@@download/ENCFF346XAR.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF122VCZ bigWig fold change over control ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF457SCP, ENCFF636ISQ, ENCFF998GMZ 249603240 ENCODE Processing Pipeline 7fdd264c0d965cef941dc02d37f5b734 https://www.encodeproject.org/files/ENCFF122VCZ/@@download/ENCFF122VCZ.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF873CLE bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF457SCP, ENCFF998GMZ 2276128 ENCODE Processing Pipeline 41c577d36fc12da6bd7db479b80ba431 https://www.encodeproject.org/files/ENCFF873CLE/@@download/ENCFF873CLE.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF081YAN bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF636ISQ, ENCFF998GMZ 2161600 ENCODE Processing Pipeline 2ff4a5f8741d7d3809aec33b42266ba6 https://www.encodeproject.org/files/ENCFF081YAN/@@download/ENCFF081YAN.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF881JMT bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF457SCP, ENCFF636ISQ, ENCFF998GMZ 4179661 ENCODE Processing Pipeline 2e7fccb0eaf1844ca652272840672c89 https://www.encodeproject.org/files/ENCFF881JMT/@@download/ENCFF881JMT.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF874TED bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF873CLE 4948310 ENCODE Processing Pipeline f2b27842ee6c5a8a1e180089f0702b42 https://www.encodeproject.org/files/ENCFF874TED/@@download/ENCFF874TED.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF544CBH bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF081YAN 5376773 ENCODE Processing Pipeline e7e6f3f7b8289cfe87a336b260571d42 https://www.encodeproject.org/files/ENCFF544CBH/@@download/ENCFF544CBH.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF677YBJ bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF881JMT 10169019 ENCODE Processing Pipeline 82d09b1413fa43008e949cc3f9567e6d https://www.encodeproject.org/files/ENCFF677YBJ/@@download/ENCFF677YBJ.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF270FXG bed narrowPeak conservative idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF081YAN, ENCFF873CLE, ENCFF881JMT 15591 ENCODE Processing Pipeline a4bd1f2dc53d378b8dde7c5792cc9edf https://www.encodeproject.org/files/ENCFF270FXG/@@download/ENCFF270FXG.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF149CQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF270FXG 70060 ENCODE Processing Pipeline f452a86351c49eff8dfc482f852ad621 https://www.encodeproject.org/files/ENCFF149CQZ/@@download/ENCFF149CQZ.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF254MPF bed narrowPeak optimal idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF081YAN, ENCFF873CLE, ENCFF881JMT 23891 ENCODE Processing Pipeline cc0458db40e7d908cb8702d577c43933 https://www.encodeproject.org/files/ENCFF254MPF/@@download/ENCFF254MPF.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF856SGO bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF254MPF 97409 ENCODE Processing Pipeline da68836258a5fe21478b664fb2534437 https://www.encodeproject.org/files/ENCFF856SGO/@@download/ENCFF856SGO.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF890CGC bigWig signal p-value ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF089XMI, ENCFF332CUX 304291970 ENCODE Processing Pipeline 6dc9cf0eaa4f03f9da9215275ec69543 https://www.encodeproject.org/files/ENCFF890CGC/@@download/ENCFF890CGC.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF703MOP bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF735OGT 4920659 ENCODE Processing Pipeline 7a63072b86aaca210c698fb5e84eb7af https://www.encodeproject.org/files/ENCFF703MOP/@@download/ENCFF703MOP.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF620SGT bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF998GXA 5369251 ENCODE Processing Pipeline 1582de2d83457e5f27bd66b7c3f5c178 https://www.encodeproject.org/files/ENCFF620SGT/@@download/ENCFF620SGT.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF961QKD bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF747ICD 79467 ENCODE Processing Pipeline b3c8a6f493e870c1c477c85def9df4a5 https://www.encodeproject.org/files/ENCFF961QKD/@@download/ENCFF961QKD.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF168ZGI bigWig signal p-value ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF089XMI, ENCFF263PLG, ENCFF332CUX 308180519 ENCODE Processing Pipeline 4d2bbb33058604e7ea4a2e3890cb7be9 https://www.encodeproject.org/files/ENCFF168ZGI/@@download/ENCFF168ZGI.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF735OGT bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF089XMI, ENCFF332CUX 2247031 ENCODE Processing Pipeline c0f9fc15b72888604bf828085945b6ad https://www.encodeproject.org/files/ENCFF735OGT/@@download/ENCFF735OGT.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF304OMG bed narrowPeak conservative idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF735OGT, ENCFF857GVA, ENCFF998GXA 16181 ENCODE Processing Pipeline 2b42217089ac50aa4ad4783f27fee72d https://www.encodeproject.org/files/ENCFF304OMG/@@download/ENCFF304OMG.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF747ICD bed narrowPeak optimal idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF735OGT, ENCFF857GVA, ENCFF998GXA 22148 ENCODE Processing Pipeline 726728ad07d94d62ed145038a4cf6a6e https://www.encodeproject.org/files/ENCFF747ICD/@@download/ENCFF747ICD.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF998GXA bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF263PLG, ENCFF332CUX 2151827 ENCODE Processing Pipeline 88b844ffe29f3f29ab2fc5e1cd51d856 https://www.encodeproject.org/files/ENCFF998GXA/@@download/ENCFF998GXA.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF696EUW bigWig signal p-value ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF263PLG, ENCFF332CUX 236155640 ENCODE Processing Pipeline 5a9734186ec7f0de7e4fc4d77e84d3ab https://www.encodeproject.org/files/ENCFF696EUW/@@download/ENCFF696EUW.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF384LRL bigWig fold change over control ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF263PLG, ENCFF332CUX 126069694 ENCODE Processing Pipeline 6bf73702addc3bcfa324d190db9dab2b https://www.encodeproject.org/files/ENCFF384LRL/@@download/ENCFF384LRL.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF501LIV bigWig fold change over control ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF089XMI, ENCFF263PLG, ENCFF332CUX 252873298 ENCODE Processing Pipeline 98c150f4128893cf9e9a31b7b1587449 https://www.encodeproject.org/files/ENCFF501LIV/@@download/ENCFF501LIV.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF637GWO bigBed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF857GVA 10178401 ENCODE Processing Pipeline d0785e1fbf6f42c198c0284f26ab0c67 https://www.encodeproject.org/files/ENCFF637GWO/@@download/ENCFF637GWO.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF488VMG bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF304OMG 70816 ENCODE Processing Pipeline bae5bd55ce41b6a949ba4c79b654b5c9 https://www.encodeproject.org/files/ENCFF488VMG/@@download/ENCFF488VMG.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF184WZB bigWig fold change over control ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF089XMI, ENCFF332CUX 149621670 ENCODE Processing Pipeline 8836b72b27c95c881fdd15eee83aad7e https://www.encodeproject.org/files/ENCFF184WZB/@@download/ENCFF184WZB.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF857GVA bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF089XMI, ENCFF263PLG, ENCFF332CUX 4176414 ENCODE Processing Pipeline 163c2640b9519deb60425b44c6f5c14a https://www.encodeproject.org/files/ENCFF857GVA/@@download/ENCFF857GVA.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YNP bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YNX 153584597 Kevin Struhl, HMS e511533be270d8ef3b3c1d13f472f159 https://www.encodeproject.org/files/ENCFF000YNP/@@download/ENCFF000YNP.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YNQ bigBed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNF 535159 Kevin Struhl, HMS de18359a921c502297acd1d56dff35c5 https://www.encodeproject.org/files/ENCFF000YNQ/@@download/ENCFF000YNQ.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YNR bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YNW 187964677 Kevin Struhl, HMS 358e41ae85a28f50e9e0566d1e05356a https://www.encodeproject.org/files/ENCFF000YNR/@@download/ENCFF000YNR.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YNS bigWig signal ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 297169573 Kevin Struhl, HMS c4878c1be76226c38d5ded140a60ee4d https://www.encodeproject.org/files/ENCFF000YNS/@@download/ENCFF000YNS.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YNW fastq reads ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 283342699 Kevin Struhl, HMS 0ad5016ba72cc2a804ba495f6c09ad19 https://www.encodeproject.org/files/ENCFF000YNW/@@download/ENCFF000YNW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released inconsistent control read length biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YNX fastq reads ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 355953125 Kevin Struhl, HMS 9e0ae9bd653ad1774243ddc50251000e https://www.encodeproject.org/files/ENCFF000YNX/@@download/ENCFF000YNX.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released inconsistent control read length biological replicates with identical biosample insufficient read length extremely low read depth ENCFF001VNF bed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 194296 Kevin Struhl, HMS 30cdabd6bbf43b482c8459b675f20ebe https://www.encodeproject.org/files/ENCFF001VNF/@@download/ENCFF001VNF.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF002CWR bed narrowPeak optimal idr thresholded peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 72817 ENCODE Consortium Analysis Working Group 75b9839093fea57946dadfdef9ed7efd https://www.encodeproject.org/files/ENCFF002CWR/@@download/ENCFF002CWR.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF827MSM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWR 226175 ENCODE Consortium f437454b030bd5d9aaca1eb7e6f50663 https://www.encodeproject.org/files/ENCFF827MSM/@@download/ENCFF827MSM.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF735TSS bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YNX, ENCFF643CGH 157763907 ENCODE Processing Pipeline c65ad06543c09ea19930592651100585 https://www.encodeproject.org/files/ENCFF735TSS/@@download/ENCFF735TSS.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF491JGC bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YNW, ENCFF643CGH 196426429 ENCODE Processing Pipeline c75c58f4384dc4d5def835ca47a9c186 https://www.encodeproject.org/files/ENCFF491JGC/@@download/ENCFF491JGC.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF213KWS bam unfiltered alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YNW, ENCFF643CGH 311980272 ENCODE Processing Pipeline c6a0897593a003d025d4652e694c931c https://www.encodeproject.org/files/ENCFF213KWS/@@download/ENCFF213KWS.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF484MGT bam unfiltered alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YNX, ENCFF643CGH 342629684 ENCODE Processing Pipeline 0575073628d109fc39c0de3603a12476 https://www.encodeproject.org/files/ENCFF484MGT/@@download/ENCFF484MGT.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF767GEX bed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF735TSS 855381 ENCODE Processing Pipeline 70c2c616802c0f35cdd61263f0fa3cdd https://www.encodeproject.org/files/ENCFF767GEX/@@download/ENCFF767GEX.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF218IGO bed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF332BFE, ENCFF491JGC, ENCFF735TSS 3274601 ENCODE Processing Pipeline d082f109202dcb20ce851e294d6c6948 https://www.encodeproject.org/files/ENCFF218IGO/@@download/ENCFF218IGO.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF806MWQ bigBed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF218IGO 7952606 ENCODE Processing Pipeline ff4747ca37c9a667cd62e3bf861fbbc5 https://www.encodeproject.org/files/ENCFF806MWQ/@@download/ENCFF806MWQ.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF261NLZ bigBed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF767GEX 1995741 ENCODE Processing Pipeline 7a3d7c9de9c4cc63709f79360f177af9 https://www.encodeproject.org/files/ENCFF261NLZ/@@download/ENCFF261NLZ.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF970ULG bed narrowPeak optimal idr thresholded peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF218IGO, ENCFF419RSJ, ENCFF767DHX, ENCFF767GEX 36995 ENCODE Processing Pipeline 4bc6e138727894bdc9d3e9fc571c3222 https://www.encodeproject.org/files/ENCFF970ULG/@@download/ENCFF970ULG.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF211EGL bigWig fold change over control ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF332BFE, ENCFF491JGC, ENCFF735TSS 206607976 ENCODE Processing Pipeline 5122ae27136efffa4b731cee84236fa9 https://www.encodeproject.org/files/ENCFF211EGL/@@download/ENCFF211EGL.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF369WLU bigBed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF767DHX 3268966 ENCODE Processing Pipeline 98ab3f3f5f7a1bd5f4225a5a7188c10a https://www.encodeproject.org/files/ENCFF369WLU/@@download/ENCFF369WLU.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF731KVK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF970ULG 118857 ENCODE Processing Pipeline 0066fef7e30110b98767bb46fb94fa09 https://www.encodeproject.org/files/ENCFF731KVK/@@download/ENCFF731KVK.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF655ZMK bigWig signal p-value ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF332BFE, ENCFF491JGC 317790453 ENCODE Processing Pipeline 556c67540504117b73ea0f5a28889085 https://www.encodeproject.org/files/ENCFF655ZMK/@@download/ENCFF655ZMK.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF175JKD bigWig signal p-value ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF735TSS 350097919 ENCODE Processing Pipeline 419c0529de8268abb47564eddc4b1bd0 https://www.encodeproject.org/files/ENCFF175JKD/@@download/ENCFF175JKD.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF925DTL bigWig fold change over control ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF735TSS 98671712 ENCODE Processing Pipeline c424184f041b75575a9d095e1dc50f8e https://www.encodeproject.org/files/ENCFF925DTL/@@download/ENCFF925DTL.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF288YXL bigWig signal p-value ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF332BFE, ENCFF491JGC, ENCFF735TSS 382063145 ENCODE Processing Pipeline d2752d68122b98e6e86828c7806242d5 https://www.encodeproject.org/files/ENCFF288YXL/@@download/ENCFF288YXL.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF180ZTX bigWig fold change over control ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF332BFE, ENCFF491JGC 135811903 ENCODE Processing Pipeline 9af83abb91e7267cad033e2ba773545a https://www.encodeproject.org/files/ENCFF180ZTX/@@download/ENCFF180ZTX.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF767DHX bed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF332BFE, ENCFF491JGC 1569474 ENCODE Processing Pipeline 8d5abc785e969d797b1efec7b78e35c3 https://www.encodeproject.org/files/ENCFF767DHX/@@download/ENCFF767DHX.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000NLP bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NMB 555474459 Richard Myers, HAIB fe08e84d7f283b79a18c749ac31a4fe7 https://www.encodeproject.org/files/ENCFF000NLP/@@download/ENCFF000NLP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLQ bigBed broadPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TUR 381577 Richard Myers, HAIB 292be96bf4e4cce944f9c8262a3f4485 https://www.encodeproject.org/files/ENCFF000NLQ/@@download/ENCFF000NLQ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLR bigBed broadPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TUS 331274 Richard Myers, HAIB bffde865038e789c60cf8a53abbc4ac4 https://www.encodeproject.org/files/ENCFF000NLR/@@download/ENCFF000NLR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLS bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NMD 453476813 Richard Myers, HAIB 7d6df8fdb102d1862b018623b3ce477d https://www.encodeproject.org/files/ENCFF000NLS/@@download/ENCFF000NLS.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NLV bigWig raw signal ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 11369553 Richard Myers, HAIB ba9217032ed84146770f0e5adf8effe4 https://www.encodeproject.org/files/ENCFF000NLV/@@download/ENCFF000NLV.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000NLW bigWig raw signal ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 9037808 Richard Myers, HAIB e779f4e8cee946bcb313be8dbccdb9e4 https://www.encodeproject.org/files/ENCFF000NLW/@@download/ENCFF000NLW.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000NMB fastq reads ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 640852140 Richard Myers, HAIB 6e7571a8d36c1617ed48ff822fa502a0 https://www.encodeproject.org/files/ENCFF000NMB/@@download/ENCFF000NMB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NLT/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NMD fastq reads ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 653381387 Richard Myers, HAIB 9e4eebce2b5e29b7837efec608c191f2 https://www.encodeproject.org/files/ENCFF000NMD/@@download/ENCFF000NMD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NLU/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001TUR bed broadPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 192081 Richard Myers, HAIB 10b2a80dfeef6ea31f305356182a93aa https://www.encodeproject.org/files/ENCFF001TUR/@@download/ENCFF001TUR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001TUS bed broadPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 158357 Richard Myers, HAIB 6dbd5be7610da73b65355b7eba2cf41b https://www.encodeproject.org/files/ENCFF001TUS/@@download/ENCFF001TUS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 392007 ENCODE Consortium Analysis Working Group 9e0bebb6315e2ad5a66bd06d78e7107e https://www.encodeproject.org/files/ENCFF002CGJ/@@download/ENCFF002CGJ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF490IAP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGJ 923948 ENCODE Consortium 4212acfb8363743e250620985b3a198b https://www.encodeproject.org/files/ENCFF490IAP/@@download/ENCFF490IAP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF309VOE bam unfiltered alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NMD, ENCFF643CGH 827694547 ENCODE Processing Pipeline 37daa858310b27c3be190acbb81fdd1e https://www.encodeproject.org/files/ENCFF309VOE/@@download/ENCFF309VOE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF811NLF bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NMD, ENCFF643CGH 438721804 ENCODE Processing Pipeline 8b85b306c5dcc86fc314b32f4158664d https://www.encodeproject.org/files/ENCFF811NLF/@@download/ENCFF811NLF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF912ZVI bam unfiltered alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NMB, ENCFF643CGH 832419703 ENCODE Processing Pipeline 986f400102eb0137e64542f7e0c80ee0 https://www.encodeproject.org/files/ENCFF912ZVI/@@download/ENCFF912ZVI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF880RHB bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NMB, ENCFF643CGH 517056020 ENCODE Processing Pipeline 4d6c6574cf2405e5cb010e6ebc0ae066 https://www.encodeproject.org/files/ENCFF880RHB/@@download/ENCFF880RHB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF491YFV bam unfiltered alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NMB, ENCFF807MUK 829970116 ENCODE Processing Pipeline cd44746d5c2fdcabaf7e8ba00dbd8eec https://www.encodeproject.org/files/ENCFF491YFV/@@download/ENCFF491YFV.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF312WJL bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NMB, ENCFF807MUK 517323305 ENCODE Processing Pipeline 694a08dc1f1c04c8049da9310190f32d https://www.encodeproject.org/files/ENCFF312WJL/@@download/ENCFF312WJL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF069FGI bam unfiltered alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NMD, ENCFF807MUK 825012978 ENCODE Processing Pipeline c41d6343e135c6c90c12cf6b60587e82 https://www.encodeproject.org/files/ENCFF069FGI/@@download/ENCFF069FGI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF122FZS bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NMD, ENCFF807MUK 438928413 ENCODE Processing Pipeline 9443439be86652e09a02e310144e2364 https://www.encodeproject.org/files/ENCFF122FZS/@@download/ENCFF122FZS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF678SNE bigWig signal p-value ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF703HXP, ENCFF811NLF, ENCFF820TDD 343182969 ENCODE Processing Pipeline bcc138ac8fe836a19d1ed4c98d4a4b7b https://www.encodeproject.org/files/ENCFF678SNE/@@download/ENCFF678SNE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF793LJB bigWig signal p-value ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF703HXP, ENCFF820TDD, ENCFF880RHB 334049965 ENCODE Processing Pipeline 804cd6c3f651b8994fe6e1228ec1bbb5 https://www.encodeproject.org/files/ENCFF793LJB/@@download/ENCFF793LJB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471SOX bigWig fold change over control ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF703HXP, ENCFF820TDD, ENCFF880RHB 233892990 ENCODE Processing Pipeline 094050f0d80fe14629f9a468a4dfb0f8 https://www.encodeproject.org/files/ENCFF471SOX/@@download/ENCFF471SOX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF897AAX bigWig signal p-value ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703HXP, ENCFF811NLF, ENCFF820TDD, ENCFF880RHB 449007988 ENCODE Processing Pipeline 56c2863b5532773d74ba16b1a5c4bd49 https://www.encodeproject.org/files/ENCFF897AAX/@@download/ENCFF897AAX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169OSJ bigWig fold change over control ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703HXP, ENCFF811NLF, ENCFF820TDD, ENCFF880RHB 417474448 ENCODE Processing Pipeline da7bc20d386cb6b2bb86e845894bde99 https://www.encodeproject.org/files/ENCFF169OSJ/@@download/ENCFF169OSJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF293UAL bigWig fold change over control ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF703HXP, ENCFF811NLF, ENCFF820TDD 240739362 ENCODE Processing Pipeline dddf2e032b51818f9e80bf7fcfe31b81 https://www.encodeproject.org/files/ENCFF293UAL/@@download/ENCFF293UAL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF545VMA bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF703HXP, ENCFF820TDD, ENCFF880RHB 4319874 ENCODE Processing Pipeline fd3417732aea53feff665135604ed69f https://www.encodeproject.org/files/ENCFF545VMA/@@download/ENCFF545VMA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF539XCD bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF703HXP, ENCFF811NLF, ENCFF820TDD 4174616 ENCODE Processing Pipeline 282add0cbdb093023d3a276773dfaeec https://www.encodeproject.org/files/ENCFF539XCD/@@download/ENCFF539XCD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780WTZ bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703HXP, ENCFF811NLF, ENCFF820TDD, ENCFF880RHB 4689137 ENCODE Processing Pipeline d7d05eca6822f667a64a0ed6eaeb81e5 https://www.encodeproject.org/files/ENCFF780WTZ/@@download/ENCFF780WTZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF562HSJ bigBed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF539XCD 10306058 ENCODE Processing Pipeline 26310ba5d5622018c0ec341bc4d3c40d https://www.encodeproject.org/files/ENCFF562HSJ/@@download/ENCFF562HSJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF346UMT bigBed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF545VMA 10414544 ENCODE Processing Pipeline d0257a3d309ba2e5796b45edbe6626fc https://www.encodeproject.org/files/ENCFF346UMT/@@download/ENCFF346UMT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF935PCI bed narrowPeak conservative idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF539XCD, ENCFF545VMA, ENCFF780WTZ 291835 ENCODE Processing Pipeline 9374e0365d90b71c22056a59e9d62403 https://www.encodeproject.org/files/ENCFF935PCI/@@download/ENCFF935PCI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF310AKD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF935PCI 555604 ENCODE Processing Pipeline 0780f8f20f41a60dbd8e48128649cbb2 https://www.encodeproject.org/files/ENCFF310AKD/@@download/ENCFF310AKD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF351WHV bigBed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF780WTZ 10955132 ENCODE Processing Pipeline c754207bcb1a34c3765fe180b8155a07 https://www.encodeproject.org/files/ENCFF351WHV/@@download/ENCFF351WHV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF076OFH bed narrowPeak optimal idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF539XCD, ENCFF545VMA, ENCFF780WTZ 298512 ENCODE Processing Pipeline 8cf14f99bc3ac749f6b1035b2303bed7 https://www.encodeproject.org/files/ENCFF076OFH/@@download/ENCFF076OFH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF984OPX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF076OFH 565320 ENCODE Processing Pipeline 2dae0363fbd7583c8cda3e3c5de6c605 https://www.encodeproject.org/files/ENCFF984OPX/@@download/ENCFF984OPX.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF907WGA bigWig fold change over control ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 234641351 ENCODE Processing Pipeline 7baad7aa172a7f64f61cf923d0b5dbf6 https://www.encodeproject.org/files/ENCFF907WGA/@@download/ENCFF907WGA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357XMB bigWig signal p-value ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 330411041 ENCODE Processing Pipeline a2dbacd1b6cfed3965924980d7af663b https://www.encodeproject.org/files/ENCFF357XMB/@@download/ENCFF357XMB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF967MLT bigWig signal p-value ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122FZS, ENCFF277EKP, ENCFF902HRT 368503385 ENCODE Processing Pipeline 3898f044b7f72b69127b7e4d01ea4717 https://www.encodeproject.org/files/ENCFF967MLT/@@download/ENCFF967MLT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF607IFK bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 4314834 ENCODE Processing Pipeline 1c7696a434ceb7f729b43c8829d54da5 https://www.encodeproject.org/files/ENCFF607IFK/@@download/ENCFF607IFK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF624LUI bigBed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF895CZK 10332635 ENCODE Processing Pipeline 252ff8d36c314a731c57b703762d2a84 https://www.encodeproject.org/files/ENCFF624LUI/@@download/ENCFF624LUI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF492DEU bigWig signal p-value ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122FZS, ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 440027751 ENCODE Processing Pipeline a46f44dcb706985a79b470634a2736ad https://www.encodeproject.org/files/ENCFF492DEU/@@download/ENCFF492DEU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF005ZRI bigWig fold change over control ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122FZS, ENCFF277EKP, ENCFF902HRT 241572438 ENCODE Processing Pipeline 2a4c2255d44645c7b2866f8eae460ad1 https://www.encodeproject.org/files/ENCFF005ZRI/@@download/ENCFF005ZRI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF657XCG bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122FZS, ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 4695328 ENCODE Processing Pipeline cbd8c79afd064db4e86b3139fbd3c434 https://www.encodeproject.org/files/ENCFF657XCG/@@download/ENCFF657XCG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF916UYF bigBed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF607IFK 10393962 ENCODE Processing Pipeline 4c208780b5c867dc3dd18bea1b074980 https://www.encodeproject.org/files/ENCFF916UYF/@@download/ENCFF916UYF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF159DIH bigWig fold change over control ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF122FZS, ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 404987185 ENCODE Processing Pipeline caf87a3add6b0b2bf01a974825436384 https://www.encodeproject.org/files/ENCFF159DIH/@@download/ENCFF159DIH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF895CZK bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122FZS, ENCFF277EKP, ENCFF902HRT 4181922 ENCODE Processing Pipeline ad7f0547a5ed89ad349a14a94217883e https://www.encodeproject.org/files/ENCFF895CZK/@@download/ENCFF895CZK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF986VXO bed narrowPeak conservative idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF607IFK, ENCFF657XCG, ENCFF895CZK 290035 ENCODE Processing Pipeline 839b7d87623999823ba6f1c9aa2ffa02 https://www.encodeproject.org/files/ENCFF986VXO/@@download/ENCFF986VXO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF248QIW bed narrowPeak optimal idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF607IFK, ENCFF657XCG, ENCFF895CZK 302156 ENCODE Processing Pipeline a63a02eb5139b8b005ec17f233522dd5 https://www.encodeproject.org/files/ENCFF248QIW/@@download/ENCFF248QIW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF076ZIB bigBed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF657XCG 10964225 ENCODE Processing Pipeline ad45e446f35a67ee7e63233c70b99a80 https://www.encodeproject.org/files/ENCFF076ZIB/@@download/ENCFF076ZIB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF781FKH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF986VXO 552037 ENCODE Processing Pipeline c8026a762ca782cca8d638dba8c79fee https://www.encodeproject.org/files/ENCFF781FKH/@@download/ENCFF781FKH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF455AJW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF248QIW 570020 ENCODE Processing Pipeline d0527232f3110a2dfd8557b23983d020 https://www.encodeproject.org/files/ENCFF455AJW/@@download/ENCFF455AJW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MZY bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NAI 917282545 Richard Myers, HAIB 90c71e94f290de87884fab0f4db43334 https://www.encodeproject.org/files/ENCFF000MZY/@@download/ENCFF000MZY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000MZZ bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NAH 763456755 Richard Myers, HAIB d714d37f2ee457a01f113e32625236ef https://www.encodeproject.org/files/ENCFF000MZZ/@@download/ENCFF000MZZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NAB bigWig raw signal ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 1 23594892 Richard Myers, HAIB f316b2263bf08ce69db007eb75438ebc https://www.encodeproject.org/files/ENCFF000NAB/@@download/ENCFF000NAB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NAC bigWig raw signal ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 1 26101942 Richard Myers, HAIB 241e01154354969f285cda1e043c8d8e https://www.encodeproject.org/files/ENCFF000NAC/@@download/ENCFF000NAC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NAH fastq reads ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 698200509 Richard Myers, HAIB 86ca37809a3311b189c3ee3fefa3a3da https://www.encodeproject.org/files/ENCFF000NAH/@@download/ENCFF000NAH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NAI fastq reads ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 831536401 Richard Myers, HAIB 7c238bfb41efa9336ad924a163107c70 https://www.encodeproject.org/files/ENCFF000NAI/@@download/ENCFF000NAI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGB/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF100NDO bam unfiltered alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAH, ENCFF643CGH 907729341 ENCODE Processing Pipeline 123e2bf6a0a88be87b689c5471766bfb https://www.encodeproject.org/files/ENCFF100NDO/@@download/ENCFF100NDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF142VIE bam unfiltered alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NAI, ENCFF643CGH 1093931004 ENCODE Processing Pipeline ef0908d27ec213a7027b3561edbcb89c https://www.encodeproject.org/files/ENCFF142VIE/@@download/ENCFF142VIE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF325BGM bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAH, ENCFF643CGH 510539331 ENCODE Processing Pipeline 290a57bf4e5135433517e5361002bae5 https://www.encodeproject.org/files/ENCFF325BGM/@@download/ENCFF325BGM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF285GBC bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NAI, ENCFF643CGH 641729351 ENCODE Processing Pipeline 86cdf4db468ca120f2fc1e4a6ed3b33d https://www.encodeproject.org/files/ENCFF285GBC/@@download/ENCFF285GBC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF592ZAW bam unfiltered alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAH, ENCFF807MUK 904702170 ENCODE Processing Pipeline de4a19a1d47403486cb8ab773578f3a8 https://www.encodeproject.org/files/ENCFF592ZAW/@@download/ENCFF592ZAW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF879AJU bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAH, ENCFF807MUK 510780075 ENCODE Processing Pipeline 5bfd82ae48513ab427aa0383f3ed4af7 https://www.encodeproject.org/files/ENCFF879AJU/@@download/ENCFF879AJU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF420WIR bam unfiltered alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NAI, ENCFF807MUK 1088171004 ENCODE Processing Pipeline cfef1fef387f50d755616d9ecf880ab1 https://www.encodeproject.org/files/ENCFF420WIR/@@download/ENCFF420WIR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF336HSE bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NAI, ENCFF807MUK 641934085 ENCODE Processing Pipeline f2115baea14a16ca4fffba42c21b1be3 https://www.encodeproject.org/files/ENCFF336HSE/@@download/ENCFF336HSE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF931XWC bigWig signal p-value ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF285GBC, ENCFF570JEY 385387087 ENCODE Processing Pipeline 3cdc2fe3bed108645eefdf236f72f458 https://www.encodeproject.org/files/ENCFF931XWC/@@download/ENCFF931XWC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF529JIR bigWig fold change over control ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF285GBC, ENCFF325BGM, ENCFF570JEY 526957804 ENCODE Processing Pipeline 15bd0f6e76ec61ff549ca5b48c9e733e https://www.encodeproject.org/files/ENCFF529JIR/@@download/ENCFF529JIR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF934QQH bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF285GBC, ENCFF570JEY 4491216 ENCODE Processing Pipeline b8f0d2d6c14ffbd7c9a9ca64cb50a915 https://www.encodeproject.org/files/ENCFF934QQH/@@download/ENCFF934QQH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF791VHV bed narrowPeak conservative idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF191XRV, ENCFF419RSJ, ENCFF824DRB, ENCFF934QQH 440098 ENCODE Processing Pipeline 671d5a4eed133034f0d49cbe25cfdb68 https://www.encodeproject.org/files/ENCFF791VHV/@@download/ENCFF791VHV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF283CAL bigWig fold change over control ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF325BGM, ENCFF570JEY 270594578 ENCODE Processing Pipeline 21d95b3a01be371e583591d213f05158 https://www.encodeproject.org/files/ENCFF283CAL/@@download/ENCFF283CAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF185VEF bigBed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF191XRV 11241410 ENCODE Processing Pipeline e4b801fb68535dd6c709074bf2049d00 https://www.encodeproject.org/files/ENCFF185VEF/@@download/ENCFF185VEF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF542NWD bigWig signal p-value ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF285GBC, ENCFF325BGM, ENCFF570JEY 475815438 ENCODE Processing Pipeline 7ca46ab7d8644ada863feaa75e44f4d3 https://www.encodeproject.org/files/ENCFF542NWD/@@download/ENCFF542NWD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF333XHR bigBed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF934QQH 10790753 ENCODE Processing Pipeline 9563aa6aa22a51fea031f5e9dfe685af https://www.encodeproject.org/files/ENCFF333XHR/@@download/ENCFF333XHR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF500CAL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF297HAX 935825 ENCODE Processing Pipeline 4991bca2da7ed12ce71b0d63e8dedcff https://www.encodeproject.org/files/ENCFF500CAL/@@download/ENCFF500CAL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF399ECM bigWig signal p-value ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF325BGM, ENCFF570JEY 401223527 ENCODE Processing Pipeline bf08ba0acd4d5c0a25b2aae3d5d3a565 https://www.encodeproject.org/files/ENCFF399ECM/@@download/ENCFF399ECM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF771GWG bigBed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF824DRB 10605989 ENCODE Processing Pipeline 540a8b128e412dfa3fe2266b83193198 https://www.encodeproject.org/files/ENCFF771GWG/@@download/ENCFF771GWG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF134PKS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF791VHV 798333 ENCODE Processing Pipeline 932057c287b28b6699cd197299c95678 https://www.encodeproject.org/files/ENCFF134PKS/@@download/ENCFF134PKS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF297HAX bed narrowPeak optimal idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF191XRV, ENCFF419RSJ, ENCFF824DRB, ENCFF934QQH 542179 ENCODE Processing Pipeline 34ca231016192e42298695c5c65cc372 https://www.encodeproject.org/files/ENCFF297HAX/@@download/ENCFF297HAX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF111IIM bigWig fold change over control ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF285GBC, ENCFF570JEY 338277426 ENCODE Processing Pipeline 8db3953a4530d286510d28ce2caf921f https://www.encodeproject.org/files/ENCFF111IIM/@@download/ENCFF111IIM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF824DRB bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF325BGM, ENCFF570JEY 4607119 ENCODE Processing Pipeline 95318a2d9bacbe1360377eb73a046d6c https://www.encodeproject.org/files/ENCFF824DRB/@@download/ENCFF824DRB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF191XRV bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF285GBC, ENCFF325BGM, ENCFF570JEY 5301684 ENCODE Processing Pipeline 967e15909e6e2465d0556555795295dd https://www.encodeproject.org/files/ENCFF191XRV/@@download/ENCFF191XRV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF014NQI bigWig signal p-value ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF540RWT, ENCFF879AJU 391380509 ENCODE Processing Pipeline d58ba8ad3ceed2463162fa6937428f97 https://www.encodeproject.org/files/ENCFF014NQI/@@download/ENCFF014NQI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF748ERW bigWig fold change over control ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF540RWT, ENCFF879AJU 270505986 ENCODE Processing Pipeline 2ea226a4f44b85399810df74d163c1e4 https://www.encodeproject.org/files/ENCFF748ERW/@@download/ENCFF748ERW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF337VFV bigWig signal p-value ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF336HSE, ENCFF540RWT 399863706 ENCODE Processing Pipeline 5233abaaeec1f71773d06d0e9c4ffb91 https://www.encodeproject.org/files/ENCFF337VFV/@@download/ENCFF337VFV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF169EXC bigWig fold change over control ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF336HSE, ENCFF540RWT 341651780 ENCODE Processing Pipeline 26ef3c44c42a41cfe25aeff506924326 https://www.encodeproject.org/files/ENCFF169EXC/@@download/ENCFF169EXC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF300XQO bigWig fold change over control ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF336HSE, ENCFF540RWT, ENCFF879AJU 525661646 ENCODE Processing Pipeline b5ad10c28a17a866204c79df8272c88a https://www.encodeproject.org/files/ENCFF300XQO/@@download/ENCFF300XQO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF591IMY bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF336HSE, ENCFF540RWT 4548314 ENCODE Processing Pipeline 798f793a84f1e3af58a15813a23217b0 https://www.encodeproject.org/files/ENCFF591IMY/@@download/ENCFF591IMY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF699KBP bigWig signal p-value ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF336HSE, ENCFF540RWT, ENCFF879AJU 475982760 ENCODE Processing Pipeline 8d0c05a690450ae14269cb115978cbf9 https://www.encodeproject.org/files/ENCFF699KBP/@@download/ENCFF699KBP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF175AMB bigBed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420TYJ 11236396 ENCODE Processing Pipeline 0959cccb2897f21cbc61d954b6036af8 https://www.encodeproject.org/files/ENCFF175AMB/@@download/ENCFF175AMB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF116SSE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF755AXA 935249 ENCODE Processing Pipeline eeac7e076ad1ad7edf7fa3f30416d05a https://www.encodeproject.org/files/ENCFF116SSE/@@download/ENCFF116SSE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF840ZOF bed narrowPeak conservative idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF420TYJ, ENCFF591IMY, ENCFF605IMH 439768 ENCODE Processing Pipeline 920d4e9a311a4c11e6de13f8c2194529 https://www.encodeproject.org/files/ENCFF840ZOF/@@download/ENCFF840ZOF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF659ZNL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF840ZOF 796866 ENCODE Processing Pipeline 89b00ab222d07dbb1cd40a5d8782b8fe https://www.encodeproject.org/files/ENCFF659ZNL/@@download/ENCFF659ZNL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF755AXA bed narrowPeak optimal idr thresholded peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF420TYJ, ENCFF591IMY, ENCFF605IMH 541926 ENCODE Processing Pipeline 7833f49f8263628cdb770c7d08714a7d https://www.encodeproject.org/files/ENCFF755AXA/@@download/ENCFF755AXA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF605IMH bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF540RWT, ENCFF879AJU 4607785 ENCODE Processing Pipeline 1344f2b1b6e3a6c9ab3165215b3a5777 https://www.encodeproject.org/files/ENCFF605IMH/@@download/ENCFF605IMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF420TYJ bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF336HSE, ENCFF540RWT, ENCFF879AJU 5302846 ENCODE Processing Pipeline cb55e9bfeb2597b7d7a2204b1293c34d https://www.encodeproject.org/files/ENCFF420TYJ/@@download/ENCFF420TYJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF006IBV bigBed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF591IMY 10855290 ENCODE Processing Pipeline 6f300e99a58c081e79e74caf234386ab https://www.encodeproject.org/files/ENCFF006IBV/@@download/ENCFF006IBV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF703YRC bigBed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF605IMH 10601899 ENCODE Processing Pipeline eb0b8a4ab0cbab0dcee44e4c821e0fdc https://www.encodeproject.org/files/ENCFF703YRC/@@download/ENCFF703YRC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OMT bam alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000ONI 782448650 Richard Myers, HAIB 68683ab573d8607f0ccebbd82936ebbe https://www.encodeproject.org/files/ENCFF000OMT/@@download/ENCFF000OMT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF000OMU bigBed broadPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAW 103474 Richard Myers, HAIB e0bda6c1fb61810cb71aebf710c0568d https://www.encodeproject.org/files/ENCFF000OMU/@@download/ENCFF000OMU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF000OMX bigWig raw signal ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 4032813 Richard Myers, HAIB 0be84f5b8e0aca6dc8305e9af7b9fdc3 https://www.encodeproject.org/files/ENCFF000OMX/@@download/ENCFF000OMX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF000ONI fastq reads ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 903296680 Richard Myers, HAIB 97f98ddad6026fb873e305d5e253319e https://www.encodeproject.org/files/ENCFF000ONI/@@download/ENCFF000ONI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001UAW bed broadPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 35278 Richard Myers, HAIB 0b2c0d15c48eb9a3829f912c0634efd4 https://www.encodeproject.org/files/ENCFF001UAW/@@download/ENCFF001UAW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF002CIT bed narrowPeak optimal idr thresholded peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 52410 ENCODE Consortium Analysis Working Group 2c0c565a76897f3160d301f7ec998e47 https://www.encodeproject.org/files/ENCFF002CIT/@@download/ENCFF002CIT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF655RML bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIT 131499 ENCODE Consortium 3c734ca1a1160d237e4161deba3e5a17 https://www.encodeproject.org/files/ENCFF655RML/@@download/ENCFF655RML.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF457BYM bam unfiltered alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONI, ENCFF807MUK 1135700200 ENCODE Processing Pipeline dc764a351974b0ba5ca8e2c1190d05ba https://www.encodeproject.org/files/ENCFF457BYM/@@download/ENCFF457BYM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF756YAE bam alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONI, ENCFF807MUK 570896640 ENCODE Processing Pipeline bf202ac988a85c6ab616041a1cf8d2a7 https://www.encodeproject.org/files/ENCFF756YAE/@@download/ENCFF756YAE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF854FYP bam unfiltered alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONI, ENCFF643CGH 1139774091 ENCODE Processing Pipeline 48d3060d9414f350a3351b5da8b0f30b https://www.encodeproject.org/files/ENCFF854FYP/@@download/ENCFF854FYP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF916PMP bam alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONI, ENCFF643CGH 570621284 ENCODE Processing Pipeline 784a8b02de0525d9364a135b10fbcc73 https://www.encodeproject.org/files/ENCFF916PMP/@@download/ENCFF916PMP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF734XLT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF533KIC 72615 ENCODE Processing Pipeline ed31d6afdf8bade405c4da7b36b03922 https://www.encodeproject.org/files/ENCFF734XLT/@@download/ENCFF734XLT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF203IVF bigWig fold change over control ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF916PMP, ENCFF948LKH 272292917 ENCODE Processing Pipeline f952c8cb257eea3c32f59419cae8e955 https://www.encodeproject.org/files/ENCFF203IVF/@@download/ENCFF203IVF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF878KED bigWig fold change over control ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF756YAE 271873250 ENCODE Processing Pipeline 360479d2d7f6595cd33f5d7fa9fd1206 https://www.encodeproject.org/files/ENCFF878KED/@@download/ENCFF878KED.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF702WPJ bed narrowPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF756YAE 3568604 ENCODE Processing Pipeline 71929a7a0a5c589ffb5ea443f2a8db03 https://www.encodeproject.org/files/ENCFF702WPJ/@@download/ENCFF702WPJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF555LKT bigBed narrowPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF702WPJ 7968183 ENCODE Processing Pipeline 7bfaf448a0d1157d913f1494ad082099 https://www.encodeproject.org/files/ENCFF555LKT/@@download/ENCFF555LKT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF175OER bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF001TDO, ENCFF702WPJ 20232 ENCODE Processing Pipeline 754ac9672f59f5478f243937366b1ccf https://www.encodeproject.org/files/ENCFF175OER/@@download/ENCFF175OER.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF969DLI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF175OER 72541 ENCODE Processing Pipeline ccef59821875bd85cfef4b381cbc6bfb https://www.encodeproject.org/files/ENCFF969DLI/@@download/ENCFF969DLI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF533KIC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF419RSJ, ENCFF948WCH 20375 ENCODE Processing Pipeline f58afb82becf0cefc3f1fb31e45636e8 https://www.encodeproject.org/files/ENCFF533KIC/@@download/ENCFF533KIC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF776UZH bigWig signal p-value ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF756YAE 487058151 ENCODE Processing Pipeline 4dea7d9bf2a0c3a7e4b5f9ec59c90447 https://www.encodeproject.org/files/ENCFF776UZH/@@download/ENCFF776UZH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF644FWA bigWig signal p-value ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF916PMP, ENCFF948LKH 482796645 ENCODE Processing Pipeline c3658fcbdbcc1b5e2b045c41dc58099c https://www.encodeproject.org/files/ENCFF644FWA/@@download/ENCFF644FWA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF948WCH bed narrowPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF916PMP, ENCFF948LKH 3565086 ENCODE Processing Pipeline 3e6c618a1f9248359c8e02b31370e4b7 https://www.encodeproject.org/files/ENCFF948WCH/@@download/ENCFF948WCH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF029DMU bigBed narrowPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948WCH 7954544 ENCODE Processing Pipeline a85520188ccc077977d346592c92480f https://www.encodeproject.org/files/ENCFF029DMU/@@download/ENCFF029DMU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF791UGB fastq reads ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 1 ENCFF254TVF 2874308028 Michael Snyder, Stanford 2ac75745ce315ba2759dd8d51cccac60 SRA:SRR6213832 https://www.encodeproject.org/files/ENCFF791UGB/@@download/ENCFF791UGB.fastq.gz Illumina HiSeq 4000 /files/ENCFF633HXG/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF254TVF fastq reads ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 1 100 paired-ended 2 ENCFF791UGB 3460387533 Michael Snyder, Stanford ea55fc67305ea4bd5179719cb67b3044 SRA:SRR6213832 https://www.encodeproject.org/files/ENCFF254TVF/@@download/ENCFF254TVF.fastq.gz Illumina HiSeq 4000 /files/ENCFF886BMC/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF269UFJ bam alignments ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF254TVF, ENCFF643CGH, ENCFF791UGB 3867277375 ENCODE Processing Pipeline 98ef63956ffbfc70d85955ffe45d46cb https://www.encodeproject.org/files/ENCFF269UFJ/@@download/ENCFF269UFJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF335VAM bam unfiltered alignments ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF254TVF, ENCFF791UGB, ENCFF807MUK 5973729164 ENCODE Processing Pipeline 324d20a131cfd38fbc64b2f640134e65 https://www.encodeproject.org/files/ENCFF335VAM/@@download/ENCFF335VAM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF043IWY bam unfiltered alignments ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF254TVF, ENCFF643CGH, ENCFF791UGB 5979845402 ENCODE Processing Pipeline bc8a9c08f82fd9171ab64e3c0d1d8e9f https://www.encodeproject.org/files/ENCFF043IWY/@@download/ENCFF043IWY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF643EGO bam alignments ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF254TVF, ENCFF791UGB, ENCFF807MUK 3860867483 ENCODE Processing Pipeline 715a19871c7b968eb1eb09d485a1e9ff https://www.encodeproject.org/files/ENCFF643EGO/@@download/ENCFF643EGO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF046HPB bigWig signal p-value ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF447ZPV, ENCFF643EGO 1129340514 ENCODE Processing Pipeline c5945f4c335ef6c48eeddd2b05b3bb63 https://www.encodeproject.org/files/ENCFF046HPB/@@download/ENCFF046HPB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF596FFJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF001TDO, ENCFF622MMP 75135 ENCODE Processing Pipeline 767ad2e6ecf04843173bb39c4ed8395d https://www.encodeproject.org/files/ENCFF596FFJ/@@download/ENCFF596FFJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF622MMP bed narrowPeak peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF447ZPV, ENCFF643EGO 4887840 ENCODE Processing Pipeline 9849ed51ac76163eb2766f9f421b039f https://www.encodeproject.org/files/ENCFF622MMP/@@download/ENCFF622MMP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF766ZCY bigWig fold change over control ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF447ZPV, ENCFF643EGO 1120520150 ENCODE Processing Pipeline b82146f1a7bec171b65a42a112df56a1 https://www.encodeproject.org/files/ENCFF766ZCY/@@download/ENCFF766ZCY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF833RNH bigBed narrowPeak peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF622MMP 11671607 ENCODE Processing Pipeline f37542dcc1860ab4dd2ef790bf052924 https://www.encodeproject.org/files/ENCFF833RNH/@@download/ENCFF833RNH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF579BWL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF596FFJ 175598 ENCODE Processing Pipeline 5a8595726c6c575329b7872ce299898e https://www.encodeproject.org/files/ENCFF579BWL/@@download/ENCFF579BWL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF630NCN bigWig fold change over control ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF269UFJ, ENCFF405SDZ 1127486917 ENCODE Processing Pipeline 13dd1275a23a1575cd1b305f825a54d0 https://www.encodeproject.org/files/ENCFF630NCN/@@download/ENCFF630NCN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF684ERK bigBed narrowPeak peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF704PUS 11676952 ENCODE Processing Pipeline c4b573918e110c37231f72890a87b833 https://www.encodeproject.org/files/ENCFF684ERK/@@download/ENCFF684ERK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF154TUC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF226GKH 184266 ENCODE Processing Pipeline cd78c172206d110df4116f8a90573fea https://www.encodeproject.org/files/ENCFF154TUC/@@download/ENCFF154TUC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF704PUS bed narrowPeak peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF269UFJ, ENCFF405SDZ 4893357 ENCODE Processing Pipeline 396eb7136613b900a86f79d36c87c733 https://www.encodeproject.org/files/ENCFF704PUS/@@download/ENCFF704PUS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF226GKH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF419RSJ, ENCFF704PUS 78704 ENCODE Processing Pipeline 4bf6bdc79f809decd43d6df8fee1c6ba https://www.encodeproject.org/files/ENCFF226GKH/@@download/ENCFF226GKH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF916SVE bigWig signal p-value ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF269UFJ, ENCFF405SDZ 1131919168 ENCODE Processing Pipeline c32e9d73228b058239534a754d3fe06b https://www.encodeproject.org/files/ENCFF916SVE/@@download/ENCFF916SVE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000PGS bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PHG 1262274855 Richard Myers, HAIB 424e96c2b06b0b714b0c1fc4fe84ccf7 https://www.encodeproject.org/files/ENCFF000PGS/@@download/ENCFF000PGS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PGT bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PHE 1291566387 Richard Myers, HAIB 651af0c6dbd9a79884777d78b870ca88 https://www.encodeproject.org/files/ENCFF000PGT/@@download/ENCFF000PGT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PGU bigBed broadPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFO 1603006 Richard Myers, HAIB 71235abdb940262b79c67b4850d49961 https://www.encodeproject.org/files/ENCFF000PGU/@@download/ENCFF000PGU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PGV bigBed broadPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFP 953834 Richard Myers, HAIB 256c8c7b04961611322115180339a07d https://www.encodeproject.org/files/ENCFF000PGV/@@download/ENCFF000PGV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PGW bigWig raw signal ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 66888577 Richard Myers, HAIB dfc7811af0b42ece5df7126b026d5d4a https://www.encodeproject.org/files/ENCFF000PGW/@@download/ENCFF000PGW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PGY bigWig raw signal ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36090199 Richard Myers, HAIB 3e28bfa0fd04ef9e403a79307144fe47 https://www.encodeproject.org/files/ENCFF000PGY/@@download/ENCFF000PGY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PHE fastq reads ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1230672401 Richard Myers, HAIB 4a9d64fd12204aa5efdee26a29670688 https://www.encodeproject.org/files/ENCFF000PHE/@@download/ENCFF000PHE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000PHG fastq reads ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1331120379 Richard Myers, HAIB 504dbcb3bfcb216dca7b7fbc79e9295f https://www.encodeproject.org/files/ENCFF000PHG/@@download/ENCFF000PHG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF001UFO bed broadPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 1010225 Richard Myers, HAIB b47ce98eda1cac3d9f3b835db067c111 https://www.encodeproject.org/files/ENCFF001UFO/@@download/ENCFF001UFO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001UFP bed broadPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 570465 Richard Myers, HAIB 8d0adcbc204a2fc95640f1428372e544 https://www.encodeproject.org/files/ENCFF001UFP/@@download/ENCFF001UFP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CKF bed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1191204 ENCODE Consortium Analysis Working Group 1377acce5b4f8944e3f6ca12debd45d0 https://www.encodeproject.org/files/ENCFF002CKF/@@download/ENCFF002CKF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF813SUF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKF 2541591 ENCODE Consortium 4a1a45c9fc15627512fd75641b9dc701 https://www.encodeproject.org/files/ENCFF813SUF/@@download/ENCFF813SUF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF341QCS bam unfiltered alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHE, ENCFF643CGH 1580825989 ENCODE Processing Pipeline bce708d38aa8f696a0162312b19d60ba https://www.encodeproject.org/files/ENCFF341QCS/@@download/ENCFF341QCS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF435DKZ bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHE, ENCFF643CGH 863391414 ENCODE Processing Pipeline 875084a679cccdd4339b63abb6d987d6 https://www.encodeproject.org/files/ENCFF435DKZ/@@download/ENCFF435DKZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF481WJC bam unfiltered alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHG, ENCFF643CGH 1577177442 ENCODE Processing Pipeline b6ddb79e65824e75c7c685ff6b609ab8 https://www.encodeproject.org/files/ENCFF481WJC/@@download/ENCFF481WJC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF178SXE bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHG, ENCFF643CGH 743760816 ENCODE Processing Pipeline 01f88275cbb3e9149201364b46c6b75d https://www.encodeproject.org/files/ENCFF178SXE/@@download/ENCFF178SXE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF622NLS bam unfiltered alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHG, ENCFF807MUK 1573801782 ENCODE Processing Pipeline 142023aac218d62306806d0a9d5cab12 https://www.encodeproject.org/files/ENCFF622NLS/@@download/ENCFF622NLS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF249IWE bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHG, ENCFF807MUK 744111148 ENCODE Processing Pipeline d7a12d8bb12ba0c4eece1572ce99a14c https://www.encodeproject.org/files/ENCFF249IWE/@@download/ENCFF249IWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF491CGX bam unfiltered alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHE, ENCFF807MUK 1572927711 ENCODE Processing Pipeline 2bca295d47bf939f007f561dd17f3557 https://www.encodeproject.org/files/ENCFF491CGX/@@download/ENCFF491CGX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF466SFU bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHE, ENCFF807MUK 863691631 ENCODE Processing Pipeline 00d1e925c921582ff0aac755a088a122 https://www.encodeproject.org/files/ENCFF466SFU/@@download/ENCFF466SFU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF446XDZ bigWig signal p-value ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178SXE 477781255 ENCODE Processing Pipeline e3cdc3a5741bc365aca064def696fbfa https://www.encodeproject.org/files/ENCFF446XDZ/@@download/ENCFF446XDZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF497MQF bigWig fold change over control ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178SXE 334571752 ENCODE Processing Pipeline bc68f7588381f0167ed631200f79d3bb https://www.encodeproject.org/files/ENCFF497MQF/@@download/ENCFF497MQF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF671PSW bigWig signal p-value ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF435DKZ 468578616 ENCODE Processing Pipeline 00f794e76cf50a6823ae3d94b0ee2e30 https://www.encodeproject.org/files/ENCFF671PSW/@@download/ENCFF671PSW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF905EUN bigWig signal p-value ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178SXE, ENCFF435DKZ 589455414 ENCODE Processing Pipeline 5027f008fb04fb74e0fb3daaeb1a1b81 https://www.encodeproject.org/files/ENCFF905EUN/@@download/ENCFF905EUN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF957STN bigWig fold change over control ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF435DKZ 425846904 ENCODE Processing Pipeline bd0b0ff44361bb6d160187bd8151859e https://www.encodeproject.org/files/ENCFF957STN/@@download/ENCFF957STN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF601JOJ bigWig fold change over control ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178SXE, ENCFF435DKZ 653052833 ENCODE Processing Pipeline 7eb43bbbcaa8aeb11c31b87a0598a34d https://www.encodeproject.org/files/ENCFF601JOJ/@@download/ENCFF601JOJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF018FYT bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF435DKZ 4517378 ENCODE Processing Pipeline bca791059416d8a8742a0358aee86cc8 https://www.encodeproject.org/files/ENCFF018FYT/@@download/ENCFF018FYT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF168MWY bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178SXE, ENCFF435DKZ 5012326 ENCODE Processing Pipeline b9fae953cce2f57c52d080dca2467f72 https://www.encodeproject.org/files/ENCFF168MWY/@@download/ENCFF168MWY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF467MCE bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178SXE 4557476 ENCODE Processing Pipeline b123cdf1d19324a9f82c8575df55f7e3 https://www.encodeproject.org/files/ENCFF467MCE/@@download/ENCFF467MCE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF992KKV bigBed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF467MCE 10932969 ENCODE Processing Pipeline 0a9939c711fa3d608e53fdc7b1b3de67 https://www.encodeproject.org/files/ENCFF992KKV/@@download/ENCFF992KKV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF592HQK bigBed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF168MWY 11608360 ENCODE Processing Pipeline 500afbc2b53787b31c20d58244e5e7fc https://www.encodeproject.org/files/ENCFF592HQK/@@download/ENCFF592HQK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF954QKM bigBed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF018FYT 10968438 ENCODE Processing Pipeline f69b011036b4d54a5160c174938286e4 https://www.encodeproject.org/files/ENCFF954QKM/@@download/ENCFF954QKM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF252PLM bed narrowPeak conservative idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FYT, ENCFF168MWY, ENCFF419RSJ, ENCFF467MCE 818480 ENCODE Processing Pipeline 85b63599d806a528d71b921c134cc20c https://www.encodeproject.org/files/ENCFF252PLM/@@download/ENCFF252PLM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF543WTP bed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF018FYT, ENCFF168MWY, ENCFF419RSJ, ENCFF467MCE 945660 ENCODE Processing Pipeline 9ea142ef1f326a6f169650abf716af98 https://www.encodeproject.org/files/ENCFF543WTP/@@download/ENCFF543WTP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF493ZQB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF252PLM 1488308 ENCODE Processing Pipeline 38cb078f5af5c43b3cce26868b158e57 https://www.encodeproject.org/files/ENCFF493ZQB/@@download/ENCFF493ZQB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF008COY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF543WTP 1659828 ENCODE Processing Pipeline 455bdc7f9e864cc07ba471f400a1a4c1 https://www.encodeproject.org/files/ENCFF008COY/@@download/ENCFF008COY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF693EOH bigWig signal p-value ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249IWE, ENCFF346RZT 510484673 ENCODE Processing Pipeline 411581c86c566db9677d3ed0e6c684d2 https://www.encodeproject.org/files/ENCFF693EOH/@@download/ENCFF693EOH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF583JMZ bigWig signal p-value ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF466SFU 565310933 ENCODE Processing Pipeline a472297f8ba03142a2b83d9b1e8b35f1 https://www.encodeproject.org/files/ENCFF583JMZ/@@download/ENCFF583JMZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF804LNZ bigWig fold change over control ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249IWE, ENCFF346RZT, ENCFF466SFU 655488472 ENCODE Processing Pipeline e72db7d1e524708211fb9d77cb4e9635 https://www.encodeproject.org/files/ENCFF804LNZ/@@download/ENCFF804LNZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF091UHT bigBed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF327TVJ 10974837 ENCODE Processing Pipeline 286af5b4542667e1107b540e02cda4a7 https://www.encodeproject.org/files/ENCFF091UHT/@@download/ENCFF091UHT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF210CPJ bigWig signal p-value ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249IWE, ENCFF346RZT, ENCFF466SFU 589546806 ENCODE Processing Pipeline 59b6ed2e55792ae6591d026ccff1a49e https://www.encodeproject.org/files/ENCFF210CPJ/@@download/ENCFF210CPJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF487OYC bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249IWE, ENCFF346RZT 4558024 ENCODE Processing Pipeline e6182e7855053208ac2899d09d72a51b https://www.encodeproject.org/files/ENCFF487OYC/@@download/ENCFF487OYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF327TVJ bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF466SFU 4525639 ENCODE Processing Pipeline 74e9a09fbfe54eeeb20ac00a4e971cb3 https://www.encodeproject.org/files/ENCFF327TVJ/@@download/ENCFF327TVJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF429DPZ bigBed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF487OYC 10928668 ENCODE Processing Pipeline 009ce71716e83b11bcf4b1a9b04aa253 https://www.encodeproject.org/files/ENCFF429DPZ/@@download/ENCFF429DPZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF651AZJ bigWig fold change over control ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249IWE, ENCFF346RZT 337863261 ENCODE Processing Pipeline cc2477c04e2cf36e6ecf6a909443c66a https://www.encodeproject.org/files/ENCFF651AZJ/@@download/ENCFF651AZJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF342TKO bigWig fold change over control ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF466SFU 424527940 ENCODE Processing Pipeline b6d136d1d941f84d4074f9bc5ea0917f https://www.encodeproject.org/files/ENCFF342TKO/@@download/ENCFF342TKO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF297IFU bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249IWE, ENCFF346RZT, ENCFF466SFU 5015521 ENCODE Processing Pipeline 3ef5b0174a679daf3f7761d08e724175 https://www.encodeproject.org/files/ENCFF297IFU/@@download/ENCFF297IFU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF808VWK bigBed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF297IFU 11604376 ENCODE Processing Pipeline 9d9113ae15b5bcb8faca93a07b6eabd0 https://www.encodeproject.org/files/ENCFF808VWK/@@download/ENCFF808VWK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF329MOF bed narrowPeak conservative idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF297IFU, ENCFF327TVJ, ENCFF487OYC 816078 ENCODE Processing Pipeline 55e49c887d7a85977cc20da2f00b2607 https://www.encodeproject.org/files/ENCFF329MOF/@@download/ENCFF329MOF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF720IND bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF329MOF 1484255 ENCODE Processing Pipeline 26c6eb1b272a372bf435a0f934728d5d https://www.encodeproject.org/files/ENCFF720IND/@@download/ENCFF720IND.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF237OKO bed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF297IFU, ENCFF327TVJ, ENCFF487OYC 948053 ENCODE Processing Pipeline 13e337503a6a9deb5c4953281268d9fa https://www.encodeproject.org/files/ENCFF237OKO/@@download/ENCFF237OKO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF915BIE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF237OKO 1663186 ENCODE Processing Pipeline ef384a4aa234cd9cf96c4900311e8c61 https://www.encodeproject.org/files/ENCFF915BIE/@@download/ENCFF915BIE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000XXH bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XXY 520479078 Michael Snyder, Stanford a71bae82f8c0ceb2201726303d0e90a7 https://www.encodeproject.org/files/ENCFF000XXH/@@download/ENCFF000XXH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XXI bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYC 449163761 Michael Snyder, Stanford 9a2305b44b1ff02bbfe8fcf63d593b2f https://www.encodeproject.org/files/ENCFF000XXI/@@download/ENCFF000XXI.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XXJ bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKY 2396029 Michael Snyder, Stanford 83d4616cd5ce302ea4133aff63692d33 https://www.encodeproject.org/files/ENCFF000XXJ/@@download/ENCFF000XXJ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XXM bigWig signal ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 382744775 Michael Snyder, Stanford 3ad25f7b7aada80ee58aa6168eb7dae2 https://www.encodeproject.org/files/ENCFF000XXM/@@download/ENCFF000XXM.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XXY fastq reads ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 976019926 Michael Snyder, Stanford 67fd570e63b62ef5e6d5e2f8a6ca82eb https://www.encodeproject.org/files/ENCFF000XXY/@@download/ENCFF000XXY.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XYC fastq reads ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1038710794 Michael Snyder, Stanford 85c277b4461a3ce5f5cb405f2f8d2366 https://www.encodeproject.org/files/ENCFF000XYC/@@download/ENCFF000XYC.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKY bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1056881 Michael Snyder, Stanford ea6c604c71a83a730fa8a32ddeb4adfb https://www.encodeproject.org/files/ENCFF001VKY/@@download/ENCFF001VKY.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CUU bed narrowPeak optimal idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 780473 ENCODE Consortium Analysis Working Group bcc4a60fb4007598f27ba82185075807 https://www.encodeproject.org/files/ENCFF002CUU/@@download/ENCFF002CUU.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF050HHV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUU 1746289 ENCODE Consortium 8f789d373f7382c3014cfa02882951d6 https://www.encodeproject.org/files/ENCFF050HHV/@@download/ENCFF050HHV.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF037GJA bam unfiltered alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XYC, ENCFF643CGH 1254816230 ENCODE Processing Pipeline a548d1e796a3fc48b16f089ede442cc5 https://www.encodeproject.org/files/ENCFF037GJA/@@download/ENCFF037GJA.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF363YBM bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XYC, ENCFF643CGH 844760149 ENCODE Processing Pipeline 855c0241e135a5f0c916b1d64c24d338 https://www.encodeproject.org/files/ENCFF363YBM/@@download/ENCFF363YBM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF191XVW bam unfiltered alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXY, ENCFF643CGH 1203170884 ENCODE Processing Pipeline 86f3642dc38d0e1d2d97d442dc31935d https://www.encodeproject.org/files/ENCFF191XVW/@@download/ENCFF191XVW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF176NKY bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXY, ENCFF643CGH 830398783 ENCODE Processing Pipeline 4d2d4e14868cd55f4a3a7214ba99406f https://www.encodeproject.org/files/ENCFF176NKY/@@download/ENCFF176NKY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF034NHE bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXY, ENCFF807MUK 830756089 ENCODE Processing Pipeline f49b37c7d186b373286d193b3069c4f3 https://www.encodeproject.org/files/ENCFF034NHE/@@download/ENCFF034NHE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748FII bam unfiltered alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXY, ENCFF807MUK 1196975869 ENCODE Processing Pipeline 84d09cac6e3f22230ef15d355c75bb56 https://www.encodeproject.org/files/ENCFF748FII/@@download/ENCFF748FII.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF472IEG bam unfiltered alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XYC, ENCFF807MUK 1249703872 ENCODE Processing Pipeline 60d6c0694aa971203ebb795b333ba82c https://www.encodeproject.org/files/ENCFF472IEG/@@download/ENCFF472IEG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF585DEP bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XYC, ENCFF807MUK 845076804 ENCODE Processing Pipeline c802b908ab68bd757e691c3096d07823 https://www.encodeproject.org/files/ENCFF585DEP/@@download/ENCFF585DEP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF100XEX bigWig signal p-value ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF176NKY 538578002 ENCODE Processing Pipeline 99a0facac578f16a790ad30a28ec5676 https://www.encodeproject.org/files/ENCFF100XEX/@@download/ENCFF100XEX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF893VGF bigWig signal p-value ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF363YBM 544150674 ENCODE Processing Pipeline 8ccb34a3676c494ef17e80fa9ba5d21f https://www.encodeproject.org/files/ENCFF893VGF/@@download/ENCFF893VGF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460LYM bigWig signal p-value ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF176NKY, ENCFF363YBM 728389047 ENCODE Processing Pipeline fd1ae356c7d7b97d1a9269ac6325481f https://www.encodeproject.org/files/ENCFF460LYM/@@download/ENCFF460LYM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF463UEH bigWig fold change over control ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF176NKY 486779832 ENCODE Processing Pipeline f8f09ec2b20c990c5f5f6151e9631e8c https://www.encodeproject.org/files/ENCFF463UEH/@@download/ENCFF463UEH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF675IUQ bigWig fold change over control ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF363YBM 437403481 ENCODE Processing Pipeline 53a30fbad01c6e3f27642dd4f57cece4 https://www.encodeproject.org/files/ENCFF675IUQ/@@download/ENCFF675IUQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF789EFR bigWig fold change over control ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF176NKY, ENCFF363YBM 764852852 ENCODE Processing Pipeline 66b7aab89d3eb3c39341ed684d3ea39a https://www.encodeproject.org/files/ENCFF789EFR/@@download/ENCFF789EFR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF964LDF bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF363YBM 4915288 ENCODE Processing Pipeline c72479a16d651019fa9f19d236428b51 https://www.encodeproject.org/files/ENCFF964LDF/@@download/ENCFF964LDF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471BDU bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF176NKY 4911932 ENCODE Processing Pipeline 3ec44264db7da38c7d8ed3fe9d5cc336 https://www.encodeproject.org/files/ENCFF471BDU/@@download/ENCFF471BDU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF203DLG bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF176NKY, ENCFF363YBM 4445869 ENCODE Processing Pipeline c11531619559746e9b2a3ae2d9aac7c8 https://www.encodeproject.org/files/ENCFF203DLG/@@download/ENCFF203DLG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138TUS bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF471BDU 11180331 ENCODE Processing Pipeline a02682a2d8061daee4e6861dc8d68475 https://www.encodeproject.org/files/ENCFF138TUS/@@download/ENCFF138TUS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF475ZNI bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203DLG 9050471 ENCODE Processing Pipeline 0c7c9f89ad3aa1cf2ebc92ae5898b51e https://www.encodeproject.org/files/ENCFF475ZNI/@@download/ENCFF475ZNI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF187BYG bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF964LDF 11133948 ENCODE Processing Pipeline 83b1aa69ea653a47db56e9e7fc232361 https://www.encodeproject.org/files/ENCFF187BYG/@@download/ENCFF187BYG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF933XNU bed narrowPeak conservative idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203DLG, ENCFF419RSJ, ENCFF471BDU, ENCFF964LDF 468013 ENCODE Processing Pipeline 2264f5e71aa3f9c822f9ffcd7bae862e https://www.encodeproject.org/files/ENCFF933XNU/@@download/ENCFF933XNU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF759OWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF933XNU 880631 ENCODE Processing Pipeline 28f4d9de387f99ba24df0e65af12fe58 https://www.encodeproject.org/files/ENCFF759OWV/@@download/ENCFF759OWV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF035YWE bed narrowPeak optimal idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203DLG, ENCFF419RSJ, ENCFF471BDU, ENCFF964LDF 593003 ENCODE Processing Pipeline b7b8c100dcaa066d6bb1293e5010af09 https://www.encodeproject.org/files/ENCFF035YWE/@@download/ENCFF035YWE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF215JOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF035YWE 1050619 ENCODE Processing Pipeline ba18bb030a12d8faf4738d60ec96b504 https://www.encodeproject.org/files/ENCFF215JOQ/@@download/ENCFF215JOQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF617GZD bigWig signal p-value ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585DEP 593282353 ENCODE Processing Pipeline 17fd453b1826ad111aae5780a7a2e61f https://www.encodeproject.org/files/ENCFF617GZD/@@download/ENCFF617GZD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF869INM bigWig signal p-value ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF034NHE, ENCFF107SKX, ENCFF585DEP 732318343 ENCODE Processing Pipeline a39a9d536ac3b446b00ce358dca55c83 https://www.encodeproject.org/files/ENCFF869INM/@@download/ENCFF869INM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF975UZJ bigWig signal p-value ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF034NHE, ENCFF107SKX 505761475 ENCODE Processing Pipeline a3bf501f53b3fb5b78de80a6c92dc596 https://www.encodeproject.org/files/ENCFF975UZJ/@@download/ENCFF975UZJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF939XOY bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF382SIS 9049691 ENCODE Processing Pipeline cab898c73c83b37804aa8b25374d638e https://www.encodeproject.org/files/ENCFF939XOY/@@download/ENCFF939XOY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF734SHQ bigWig fold change over control ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF034NHE, ENCFF107SKX 487456415 ENCODE Processing Pipeline eea47bb6d8296371f6648ec39ffbe850 https://www.encodeproject.org/files/ENCFF734SHQ/@@download/ENCFF734SHQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF168ICO bigWig fold change over control ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585DEP 433359864 ENCODE Processing Pipeline ab5cef8823210ed50acb7cb38ba77d37 https://www.encodeproject.org/files/ENCFF168ICO/@@download/ENCFF168ICO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF038ZLJ bigWig fold change over control ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF034NHE, ENCFF107SKX, ENCFF585DEP 771732290 ENCODE Processing Pipeline 1b0e6d52a1525ce37217f75f059a1706 https://www.encodeproject.org/files/ENCFF038ZLJ/@@download/ENCFF038ZLJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF382SIS bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF034NHE, ENCFF107SKX, ENCFF585DEP 4449368 ENCODE Processing Pipeline 75705494ecf72f4cdda9caad6c4d3e37 https://www.encodeproject.org/files/ENCFF382SIS/@@download/ENCFF382SIS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF809KZT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF346SQV 875913 ENCODE Processing Pipeline e05749e477de301068b17a726fd023cf https://www.encodeproject.org/files/ENCFF809KZT/@@download/ENCFF809KZT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF525EJQ bed narrowPeak optimal idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF382SIS, ENCFF620MYW, ENCFF672PNA 593833 ENCODE Processing Pipeline 1b4f67a75954ebc5d1390e20bb29420b https://www.encodeproject.org/files/ENCFF525EJQ/@@download/ENCFF525EJQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF346SQV bed narrowPeak conservative idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF382SIS, ENCFF620MYW, ENCFF672PNA 464630 ENCODE Processing Pipeline 2269d40de4de2fec230f52ac21f2c098 https://www.encodeproject.org/files/ENCFF346SQV/@@download/ENCFF346SQV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716PRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF525EJQ 1050515 ENCODE Processing Pipeline 923e6ba7516e73fa29ffa77932d7ef6b https://www.encodeproject.org/files/ENCFF716PRD/@@download/ENCFF716PRD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620MYW bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF034NHE, ENCFF107SKX 4762614 ENCODE Processing Pipeline e6558f5adf0ae6e46c38fc48cd8e2ba7 https://www.encodeproject.org/files/ENCFF620MYW/@@download/ENCFF620MYW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF672PNA bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585DEP 4917223 ENCODE Processing Pipeline 7654776b88aab9314ce3f5aba831b791 https://www.encodeproject.org/files/ENCFF672PNA/@@download/ENCFF672PNA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF386BWM bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF672PNA 11132613 ENCODE Processing Pipeline 9482ae8ee2ae49c408d2ebf70516688d https://www.encodeproject.org/files/ENCFF386BWM/@@download/ENCFF386BWM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614ENK bigBed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF620MYW 11061392 ENCODE Processing Pipeline e3cb582e9464307887826f2c7781498c https://www.encodeproject.org/files/ENCFF614ENK/@@download/ENCFF614ENK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VSB bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 382821027 Michael Snyder, Stanford a79378a70a030cc6cba7440bc080a4a1 https://www.encodeproject.org/files/ENCFF000VSB/@@download/ENCFF000VSB.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000VSC bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDW 2716029 Michael Snyder, Stanford 292f736d2635f75d988874a8ab7c1d80 https://www.encodeproject.org/files/ENCFF000VSC/@@download/ENCFF000VSC.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000VSD fastq reads ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 790098363 Michael Snyder, Stanford f70bab7785e2d39597ae042d8f9aedc5 https://www.encodeproject.org/files/ENCFF000VSD/@@download/ENCFF000VSD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000VSF fastq reads ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1040326383 Michael Snyder, Stanford 382f0abd18ab5450e85a1306479c7090 https://www.encodeproject.org/files/ENCFF000VSF/@@download/ENCFF000VSF.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000VSH bigWig signal ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 351921076 Michael Snyder, Stanford b72f28cefbca0136e10d5aa751f2fca4 https://www.encodeproject.org/files/ENCFF000VSH/@@download/ENCFF000VSH.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000VSI bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 493793960 Michael Snyder, Stanford 27d091541df2d037c36e043cbe7101c0 https://www.encodeproject.org/files/ENCFF000VSI/@@download/ENCFF000VSI.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF001VDW bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1086634 Michael Snyder, Stanford 43496bc940997f5b2495c4789e88d0d1 https://www.encodeproject.org/files/ENCFF001VDW/@@download/ENCFF001VDW.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF002COK bed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 326289 ENCODE Consortium Analysis Working Group 100a70ef09b8815c8809ed9b799cd078 https://www.encodeproject.org/files/ENCFF002COK/@@download/ENCFF002COK.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF415YVO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COK 796639 ENCODE Consortium e74b4e06a8cdfb5dc509abe9f09d3e00 https://www.encodeproject.org/files/ENCFF415YVO/@@download/ENCFF415YVO.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF024QRE bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF643CGH 464846566 ENCODE Processing Pipeline 5f5b0f493193c95d5f90f44029a074b5 https://www.encodeproject.org/files/ENCFF024QRE/@@download/ENCFF024QRE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF387NFS bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF643CGH 1038779995 ENCODE Processing Pipeline b3d294969b8cfa13471fb7dd19d42247 https://www.encodeproject.org/files/ENCFF387NFS/@@download/ENCFF387NFS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF093TKD bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF643CGH 767743519 ENCODE Processing Pipeline 7812e6edb3e7570bc6f1afab36e7c82a https://www.encodeproject.org/files/ENCFF093TKD/@@download/ENCFF093TKD.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF435RCL bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF643CGH 679650658 ENCODE Processing Pipeline 6b11f70710d22af2b39d491dd36d4808 https://www.encodeproject.org/files/ENCFF435RCL/@@download/ENCFF435RCL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF093KIS bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF807MUK 765647012 ENCODE Processing Pipeline 97fed7e00ba262ef7f250511063816db https://www.encodeproject.org/files/ENCFF093KIS/@@download/ENCFF093KIS.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF175DHS bam unfiltered alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF807MUK 1035509450 ENCODE Processing Pipeline 3eb9ed7714840cd5426a9b2e973ff2ea https://www.encodeproject.org/files/ENCFF175DHS/@@download/ENCFF175DHS.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF758YOO bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF807MUK 464403317 ENCODE Processing Pipeline 0a86a5781ebcc92b6f5fec282fc4dc98 https://www.encodeproject.org/files/ENCFF758YOO/@@download/ENCFF758YOO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF899LXA bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF807MUK 677705359 ENCODE Processing Pipeline 6bdbd9a999606efce617dfabb2e03a51 https://www.encodeproject.org/files/ENCFF899LXA/@@download/ENCFF899LXA.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF732OEE bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF909EYB 10191940 ENCODE Processing Pipeline 3205ee554833343783be2527821f2c55 https://www.encodeproject.org/files/ENCFF732OEE/@@download/ENCFF732OEE.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF911XJG bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 75891975 ENCODE Processing Pipeline 97ad1a10e04fd52de25d3670a99db8c4 https://www.encodeproject.org/files/ENCFF911XJG/@@download/ENCFF911XJG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF445PLI bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 232760725 ENCODE Processing Pipeline 0f4745d4b48afa6a4c826dc945c8edd6 https://www.encodeproject.org/files/ENCFF445PLI/@@download/ENCFF445PLI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF853SOB bed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF354WUJ, ENCFF512QTF, ENCFF909EYB 407249 ENCODE Processing Pipeline d964abe4d5ff7ce20874db90631d395f https://www.encodeproject.org/files/ENCFF853SOB/@@download/ENCFF853SOB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF354WUJ bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 4280947 ENCODE Processing Pipeline d8616dc3b56920001156e632fefd5187 https://www.encodeproject.org/files/ENCFF354WUJ/@@download/ENCFF354WUJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF888ANG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF853SOB 844006 ENCODE Processing Pipeline 994eb5d8ebe5f7f2958bdac22918946d https://www.encodeproject.org/files/ENCFF888ANG/@@download/ENCFF888ANG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF100DMN bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 195402083 ENCODE Processing Pipeline 22d2f0db04a8d59ad265a3b82fa9d282 https://www.encodeproject.org/files/ENCFF100DMN/@@download/ENCFF100DMN.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF462ARY bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 208362935 ENCODE Processing Pipeline 362dd4d9e96ef4882bc33c8fafa15249 https://www.encodeproject.org/files/ENCFF462ARY/@@download/ENCFF462ARY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF329MOK bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO, ENCFF899LXA 164795940 ENCODE Processing Pipeline 741eec445d1ecc99279b26863eb0fc15 https://www.encodeproject.org/files/ENCFF329MOK/@@download/ENCFF329MOK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF355HAQ bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO, ENCFF899LXA 427978818 ENCODE Processing Pipeline 88a26c00ac3effaabfeb6f4058d6343a https://www.encodeproject.org/files/ENCFF355HAQ/@@download/ENCFF355HAQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF909EYB bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 4529276 ENCODE Processing Pipeline 6afa95a3f0616f7314b161ca4616b275 https://www.encodeproject.org/files/ENCFF909EYB/@@download/ENCFF909EYB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF512QTF bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO, ENCFF899LXA 5161143 ENCODE Processing Pipeline 9af0cb5bfdff0a15952d6fd81211089f https://www.encodeproject.org/files/ENCFF512QTF/@@download/ENCFF512QTF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF808LXZ bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF354WUJ 10145374 ENCODE Processing Pipeline 8557151739bd2e8ea03d224e663fd2a6 https://www.encodeproject.org/files/ENCFF808LXZ/@@download/ENCFF808LXZ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF002SXK bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF512QTF 10975598 ENCODE Processing Pipeline 2d26f00dc6f674c44151cf4189198209 https://www.encodeproject.org/files/ENCFF002SXK/@@download/ENCFF002SXK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF341JBF bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF024QRE, ENCFF435RCL, ENCFF477ZKJ, ENCFF710SMS 164821693 ENCODE Processing Pipeline 0aad3b97d4dbfb76c68de441f81e0b08 https://www.encodeproject.org/files/ENCFF341JBF/@@download/ENCFF341JBF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF945XXY bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF024QRE, ENCFF435RCL, ENCFF477ZKJ, ENCFF710SMS 432382865 ENCODE Processing Pipeline e4aaf8acffcbe770084c73d238801b6e https://www.encodeproject.org/files/ENCFF945XXY/@@download/ENCFF945XXY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF622HGF bed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF084OAG, ENCFF419RSJ, ENCFF456YSD, ENCFF986ZCP 398658 ENCODE Processing Pipeline cd4d43710a7f1d732ab37cb220ac1e27 https://www.encodeproject.org/files/ENCFF622HGF/@@download/ENCFF622HGF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF320OFS bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF024QRE, ENCFF477ZKJ, ENCFF710SMS 195487466 ENCODE Processing Pipeline 147574aa55dad81a3acb99b3ffe8a4dd https://www.encodeproject.org/files/ENCFF320OFS/@@download/ENCFF320OFS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF121IUM bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF024QRE, ENCFF477ZKJ, ENCFF710SMS 210468661 ENCODE Processing Pipeline 5b5b7697e4975f46202fa2b77d16661a https://www.encodeproject.org/files/ENCFF121IUM/@@download/ENCFF121IUM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF986ZCP bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF024QRE, ENCFF477ZKJ, ENCFF710SMS 4506396 ENCODE Processing Pipeline 66551f691d08feacfec8ef02fffa9afa https://www.encodeproject.org/files/ENCFF986ZCP/@@download/ENCFF986ZCP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF456YSD bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF024QRE, ENCFF435RCL, ENCFF477ZKJ, ENCFF710SMS 5116513 ENCODE Processing Pipeline eff12720bfcac7c2b17952eb7bc8489e https://www.encodeproject.org/files/ENCFF456YSD/@@download/ENCFF456YSD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF079XPX bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF986ZCP 10163067 ENCODE Processing Pipeline 024ac75168ac075fcf90a5d0c47c0e04 https://www.encodeproject.org/files/ENCFF079XPX/@@download/ENCFF079XPX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF094NMD bigWig signal p-value ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF435RCL, ENCFF477ZKJ 75924943 ENCODE Processing Pipeline ed9774bf51f51e35526df36e89e7bf99 https://www.encodeproject.org/files/ENCFF094NMD/@@download/ENCFF094NMD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF937OII bigWig fold change over control ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF435RCL, ENCFF477ZKJ 234952754 ENCODE Processing Pipeline 3fd12aece69abbb3d94334222798eb78 https://www.encodeproject.org/files/ENCFF937OII/@@download/ENCFF937OII.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF538MHK bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF084OAG 10141069 ENCODE Processing Pipeline 5326b9414f019662de882ea27a62a210 https://www.encodeproject.org/files/ENCFF538MHK/@@download/ENCFF538MHK.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF084OAG bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF435RCL, ENCFF477ZKJ 4280098 ENCODE Processing Pipeline 9d49c29b2fa0740c0a717c6fdd185b34 https://www.encodeproject.org/files/ENCFF084OAG/@@download/ENCFF084OAG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF133BAV bigBed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF456YSD 10921291 ENCODE Processing Pipeline 4b7672de673cbc852909da4bdf0841ea https://www.encodeproject.org/files/ENCFF133BAV/@@download/ENCFF133BAV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF533FLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF622HGF 833504 ENCODE Processing Pipeline b28828444544a1c0e7a7a12911e40d6f https://www.encodeproject.org/files/ENCFF533FLF/@@download/ENCFF533FLF.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000PWN bigBed broadPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UJC 1270457 Richard Myers, HAIB 11fa906b2efbb795177d11991d69f831 https://www.encodeproject.org/files/ENCFF000PWN/@@download/ENCFF000PWN.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000PWO bigBed broadPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UJD 473181 Richard Myers, HAIB 422bd845e7363a78c94fedc6422bb312 https://www.encodeproject.org/files/ENCFF000PWO/@@download/ENCFF000PWO.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000PWP bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PXA 1866438744 Richard Myers, HAIB 23d62150202f52babc58f627070f4975 https://www.encodeproject.org/files/ENCFF000PWP/@@download/ENCFF000PWP.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000PWQ bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PXB 1780938257 Richard Myers, HAIB 6b1f143272cccc584fc2a52311a11c6b https://www.encodeproject.org/files/ENCFF000PWQ/@@download/ENCFF000PWQ.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000PWR bigWig raw signal ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 63189771 Richard Myers, HAIB 162db24316758414b637f6401c442dc3 https://www.encodeproject.org/files/ENCFF000PWR/@@download/ENCFF000PWR.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000PWS bigWig raw signal ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 28552306 Richard Myers, HAIB 73efb5e90fec0b896a11f358fd798ee6 https://www.encodeproject.org/files/ENCFF000PWS/@@download/ENCFF000PWS.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PXA fastq reads ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1851618159 Richard Myers, HAIB 173d82c37549c7820c744561cb60f503 https://www.encodeproject.org/files/ENCFF000PXA/@@download/ENCFF000PXA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000PXB fastq reads ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1737766650 Richard Myers, HAIB 53ce87e97d51047f811c8d867c18fedf https://www.encodeproject.org/files/ENCFF000PXB/@@download/ENCFF000PXB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001UJC bed broadPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 755568 Richard Myers, HAIB 0680a3e8b22b1807f9780998637981ee https://www.encodeproject.org/files/ENCFF001UJC/@@download/ENCFF001UJC.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001UJD bed broadPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 244531 Richard Myers, HAIB 34e29cd979c51c24a2281844874a386f https://www.encodeproject.org/files/ENCFF001UJD/@@download/ENCFF001UJD.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CLQ bed narrowPeak optimal idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 466076 ENCODE Consortium Analysis Working Group 3995b6b545fecf8ce9fe78928e2563f5 https://www.encodeproject.org/files/ENCFF002CLQ/@@download/ENCFF002CLQ.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF163PZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CLQ 1052105 ENCODE Consortium 930e8de7f3e7435c5e241c40d5dee8e7 https://www.encodeproject.org/files/ENCFF163PZR/@@download/ENCFF163PZR.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF093QMN bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PXB, ENCFF643CGH 1203989147 ENCODE Processing Pipeline fa7a8809aab0c4542e79d3323b44a1e8 https://www.encodeproject.org/files/ENCFF093QMN/@@download/ENCFF093QMN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF607PEE bam unfiltered alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PXB, ENCFF643CGH 1963005705 ENCODE Processing Pipeline e1e403fabf15efc03871bd8d727fbed6 https://www.encodeproject.org/files/ENCFF607PEE/@@download/ENCFF607PEE.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF971ILL bam unfiltered alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PXA, ENCFF643CGH 2053051037 ENCODE Processing Pipeline fb32eaf1ee85b038bdb1592b417817e1 https://www.encodeproject.org/files/ENCFF971ILL/@@download/ENCFF971ILL.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF289RGM bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PXA, ENCFF643CGH 1316020814 ENCODE Processing Pipeline ad269b05d0a2e31f14b5d768a01ffcd8 https://www.encodeproject.org/files/ENCFF289RGM/@@download/ENCFF289RGM.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF977GVI bam unfiltered alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PXA, ENCFF807MUK 2050213154 ENCODE Processing Pipeline 0323365f583743bbfcc4d93e373b5192 https://www.encodeproject.org/files/ENCFF977GVI/@@download/ENCFF977GVI.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF289YVH bam unfiltered alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PXB, ENCFF807MUK 1956275025 ENCODE Processing Pipeline 826a54bdb7731f3869504cbad91e83df https://www.encodeproject.org/files/ENCFF289YVH/@@download/ENCFF289YVH.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF725HAK bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PXA, ENCFF807MUK 1316308524 ENCODE Processing Pipeline d246a9cf545c29e2afafc93ffaf574f7 https://www.encodeproject.org/files/ENCFF725HAK/@@download/ENCFF725HAK.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF045NWB bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PXB, ENCFF807MUK 1204326321 ENCODE Processing Pipeline b714da8ce6d1dc2f3c9beb9db078b3da https://www.encodeproject.org/files/ENCFF045NWB/@@download/ENCFF045NWB.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF466LDG bigWig signal p-value ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF725HAK 775789555 ENCODE Processing Pipeline 1cdb8b3185f10209ed5e3b97395d3df6 https://www.encodeproject.org/files/ENCFF466LDG/@@download/ENCFF466LDG.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF125FCL bigWig signal p-value ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF289RGM, ENCFF836OEO 656550195 ENCODE Processing Pipeline 1c3c96e242be13e09852b7666296e33c https://www.encodeproject.org/files/ENCFF125FCL/@@download/ENCFF125FCL.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF226YCL bigWig signal p-value ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF045NWB, ENCFF522HDC 777034036 ENCODE Processing Pipeline 8432287fcec0ac14b89bb9f48ff5c6fc https://www.encodeproject.org/files/ENCFF226YCL/@@download/ENCFF226YCL.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF664AQZ bigWig signal p-value ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF045NWB, ENCFF522HDC, ENCFF725HAK 812056828 ENCODE Processing Pipeline 6e53b2f2bc4e855e731a37ea7cc28054 https://www.encodeproject.org/files/ENCFF664AQZ/@@download/ENCFF664AQZ.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF985RCB bigWig signal p-value ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF093QMN, ENCFF836OEO 779052459 ENCODE Processing Pipeline 5410da20c12378b86db89e1092071c6f https://www.encodeproject.org/files/ENCFF985RCB/@@download/ENCFF985RCB.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF036JHJ bigWig fold change over control ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF725HAK 625262504 ENCODE Processing Pipeline 2ebd9b05b47bac0218327d5ff92b8f7f https://www.encodeproject.org/files/ENCFF036JHJ/@@download/ENCFF036JHJ.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF933FTY bigWig signal p-value ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF093QMN, ENCFF289RGM, ENCFF836OEO 831929536 ENCODE Processing Pipeline 8af1123cc808938d2be47d2670ed3d8a https://www.encodeproject.org/files/ENCFF933FTY/@@download/ENCFF933FTY.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF680KQO bigWig fold change over control ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF045NWB, ENCFF522HDC 589041900 ENCODE Processing Pipeline f2adf4b8202755b04379c830eb627943 https://www.encodeproject.org/files/ENCFF680KQO/@@download/ENCFF680KQO.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF630YDI bigWig fold change over control ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF045NWB, ENCFF522HDC, ENCFF725HAK 986725976 ENCODE Processing Pipeline 8558a2830dba52d02856fffdf1069867 https://www.encodeproject.org/files/ENCFF630YDI/@@download/ENCFF630YDI.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF399FJD bigWig fold change over control ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF289RGM, ENCFF836OEO 627839816 ENCODE Processing Pipeline baa35eca099c60403ef00cd4dbf40f8d https://www.encodeproject.org/files/ENCFF399FJD/@@download/ENCFF399FJD.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF831QNI bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF725HAK 6882452 ENCODE Processing Pipeline b636262d4059d2227749aab51878ac9d https://www.encodeproject.org/files/ENCFF831QNI/@@download/ENCFF831QNI.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF653UJT bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF045NWB, ENCFF522HDC 6103983 ENCODE Processing Pipeline 7384bf8990c218b47cac769d4470c370 https://www.encodeproject.org/files/ENCFF653UJT/@@download/ENCFF653UJT.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF255QHM bigWig fold change over control ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF093QMN, ENCFF836OEO 584813937 ENCODE Processing Pipeline ecb89dd80e4fd2e0ea68c2b5a95e3878 https://www.encodeproject.org/files/ENCFF255QHM/@@download/ENCFF255QHM.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF064WFD bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF045NWB, ENCFF522HDC, ENCFF725HAK 7028966 ENCODE Processing Pipeline 2671d55a6b2309c18e827d8b9a49f29b https://www.encodeproject.org/files/ENCFF064WFD/@@download/ENCFF064WFD.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF974LAB bigBed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF064WFD 12944098 ENCODE Processing Pipeline c870a86c577e4bbe51648f21d6d7d3b0 https://www.encodeproject.org/files/ENCFF974LAB/@@download/ENCFF974LAB.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF561SEG bigBed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF831QNI 12780872 ENCODE Processing Pipeline 54f17dc580a15fa855a9294d750e168d https://www.encodeproject.org/files/ENCFF561SEG/@@download/ENCFF561SEG.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF012RKG bigBed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF653UJT 13283047 ENCODE Processing Pipeline 46c6b4166760c10b0cebb7ba4c0b68be https://www.encodeproject.org/files/ENCFF012RKG/@@download/ENCFF012RKG.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF692KUW bed narrowPeak conservative idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF064WFD, ENCFF653UJT, ENCFF831QNI 325281 ENCODE Processing Pipeline acb123ed11f022aff111eecf80eaa575 https://www.encodeproject.org/files/ENCFF692KUW/@@download/ENCFF692KUW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF518DVK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF692KUW 697187 ENCODE Processing Pipeline 9f0cd44eba23f3ec5f4d6824d998d0f8 https://www.encodeproject.org/files/ENCFF518DVK/@@download/ENCFF518DVK.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF455TDM bed narrowPeak optimal idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF064WFD, ENCFF653UJT, ENCFF831QNI 465905 ENCODE Processing Pipeline 5c2ed80d53a4008c80594b13b59766fa https://www.encodeproject.org/files/ENCFF455TDM/@@download/ENCFF455TDM.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF646PFR bigWig fold change over control ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF093QMN, ENCFF289RGM, ENCFF836OEO 1004221305 ENCODE Processing Pipeline a04779a87c467cd4588b0300e094c5b1 https://www.encodeproject.org/files/ENCFF646PFR/@@download/ENCFF646PFR.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF570OIT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF455TDM 910980 ENCODE Processing Pipeline 13077c69e1b05e0c696235348cfbbb35 https://www.encodeproject.org/files/ENCFF570OIT/@@download/ENCFF570OIT.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF469CQE bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF093QMN, ENCFF289RGM, ENCFF836OEO 7033869 ENCODE Processing Pipeline 9459d9e7a6ba5c6e5c9e13420d233016 https://www.encodeproject.org/files/ENCFF469CQE/@@download/ENCFF469CQE.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF388XAJ bigBed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF469CQE 12938462 ENCODE Processing Pipeline 4b67268ae01203f82af2519ccd46f5da https://www.encodeproject.org/files/ENCFF388XAJ/@@download/ENCFF388XAJ.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF848QNF bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF289RGM, ENCFF836OEO 6843039 ENCODE Processing Pipeline c6395b38e2eb101a6a1b18372a817f7f https://www.encodeproject.org/files/ENCFF848QNF/@@download/ENCFF848QNF.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF275XNU bed narrowPeak conservative idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF469CQE, ENCFF725LHJ, ENCFF848QNF 325309 ENCODE Processing Pipeline 11a6b527fa4aa0a41993ef20d1def353 https://www.encodeproject.org/files/ENCFF275XNU/@@download/ENCFF275XNU.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF951BQB bed narrowPeak optimal idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF469CQE, ENCFF725LHJ, ENCFF848QNF 466486 ENCODE Processing Pipeline a7402798ec5e5c167abce02eb04f525f https://www.encodeproject.org/files/ENCFF951BQB/@@download/ENCFF951BQB.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF940AFO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF951BQB 910672 ENCODE Processing Pipeline 8787a45a0b9f13337e3e7ca08626cd1d https://www.encodeproject.org/files/ENCFF940AFO/@@download/ENCFF940AFO.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF725LHJ bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF093QMN, ENCFF836OEO 6076313 ENCODE Processing Pipeline 9330733615eb556207191e4d69257d4f https://www.encodeproject.org/files/ENCFF725LHJ/@@download/ENCFF725LHJ.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF219LDI bigBed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF848QNF 12767291 ENCODE Processing Pipeline 1648f8f5a96cdde2f7cbe1bf00d39d02 https://www.encodeproject.org/files/ENCFF219LDI/@@download/ENCFF219LDI.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF045ELV bigBed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF725LHJ 13297206 ENCODE Processing Pipeline b1e487a3214167506b49cd333613cb51 https://www.encodeproject.org/files/ENCFF045ELV/@@download/ENCFF045ELV.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF188YLF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF275XNU 697966 ENCODE Processing Pipeline 890527a1e35b44fc24e2939ecc8dcf4e https://www.encodeproject.org/files/ENCFF188YLF/@@download/ENCFF188YLF.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000WCD bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WCS 346993327 Michael Snyder, Stanford 2c55b6b92555f0a1e03855e811d5fa4e https://www.encodeproject.org/files/ENCFF000WCD/@@download/ENCFF000WCD.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WCE bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFD 2479988 Michael Snyder, Stanford 39cf911e8eb944a2f68627b373520125 https://www.encodeproject.org/files/ENCFF000WCE/@@download/ENCFF000WCE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WCF bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WCR 339692845 Michael Snyder, Stanford 2323218579d55421356780a7f0511b94 https://www.encodeproject.org/files/ENCFF000WCF/@@download/ENCFF000WCF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WCG bigWig signal ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 283564516 Michael Snyder, Stanford 1236f63e87dd436f4a9177da341fa24b https://www.encodeproject.org/files/ENCFF000WCG/@@download/ENCFF000WCG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WCR fastq reads ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 885643130 Michael Snyder, Stanford ae64ae7abbb3a0e74c71ed1bb7c45abd https://www.encodeproject.org/files/ENCFF000WCR/@@download/ENCFF000WCR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000WCS fastq reads ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 615918418 Michael Snyder, Stanford 4ebdc94f635b6671e4d07c4cc894dfed https://www.encodeproject.org/files/ENCFF000WCS/@@download/ENCFF000WCS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF001VFD bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1296331 Michael Snyder, Stanford 1cb406eb16ab7f5477fbf240ef4313df https://www.encodeproject.org/files/ENCFF001VFD/@@download/ENCFF001VFD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CPI bed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 214705 ENCODE Consortium Analysis Working Group f1588e9f5654438edefe7c3f56208975 https://www.encodeproject.org/files/ENCFF002CPI/@@download/ENCFF002CPI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF703KJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPI 600498 ENCODE Consortium 62a3b723d073f88ee65bc2beacabe230 https://www.encodeproject.org/files/ENCFF703KJS/@@download/ENCFF703KJS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF486RNZ bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF643CGH 689233919 ENCODE Processing Pipeline aa2e8ee3d40b62aede524ce38a0591e2 https://www.encodeproject.org/files/ENCFF486RNZ/@@download/ENCFF486RNZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF634VSH bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF643CGH 435519372 ENCODE Processing Pipeline e018b502f48e83be7f1bf6d77833a14b https://www.encodeproject.org/files/ENCFF634VSH/@@download/ENCFF634VSH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF048NRD bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF643CGH 409018113 ENCODE Processing Pipeline 1a73604df77c86aec83885b3865bc38c https://www.encodeproject.org/files/ENCFF048NRD/@@download/ENCFF048NRD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF546LAR bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF643CGH 896392525 ENCODE Processing Pipeline c46a6da78ee1bab221d5c528da454254 https://www.encodeproject.org/files/ENCFF546LAR/@@download/ENCFF546LAR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF015AEA bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF807MUK 687232526 ENCODE Processing Pipeline 86514ff2988659aadff34a1ad4e0ab5f https://www.encodeproject.org/files/ENCFF015AEA/@@download/ENCFF015AEA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF898ZMA bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF807MUK 434930583 ENCODE Processing Pipeline 63f1ade0ed4be6cd931b18af0051c98e https://www.encodeproject.org/files/ENCFF898ZMA/@@download/ENCFF898ZMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF625MLW bam unfiltered alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF807MUK 894162393 ENCODE Processing Pipeline 20d601dd077eb3fce6eb242c519d4471 https://www.encodeproject.org/files/ENCFF625MLW/@@download/ENCFF625MLW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF785LYN bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF807MUK 406376259 ENCODE Processing Pipeline df043a90bfc841dc79a34cd8a8984edb https://www.encodeproject.org/files/ENCFF785LYN/@@download/ENCFF785LYN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF940CQB bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 143848711 ENCODE Processing Pipeline af1872104ef646ae0ae111800d239edf https://www.encodeproject.org/files/ENCFF940CQB/@@download/ENCFF940CQB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF574RRB bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 5189428 ENCODE Processing Pipeline 6b8c83bba58d4be8d759522b6ad65ed2 https://www.encodeproject.org/files/ENCFF574RRB/@@download/ENCFF574RRB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF707YNJ bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF785LYN, ENCFF898ZMA 6218903 ENCODE Processing Pipeline 6e12d74695c1715c45fe1cc82a7ab515 https://www.encodeproject.org/files/ENCFF707YNJ/@@download/ENCFF707YNJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF641KLQ bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 82816697 ENCODE Processing Pipeline 6082cd05c483eb4b34941633719c72cc https://www.encodeproject.org/files/ENCFF641KLQ/@@download/ENCFF641KLQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF462SJO bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 188612448 ENCODE Processing Pipeline 2f2229b3e29cc26f1a90ee36541c21ec https://www.encodeproject.org/files/ENCFF462SJO/@@download/ENCFF462SJO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF521QIX bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 181672544 ENCODE Processing Pipeline 1728002ff5d59c5b872d7a26e8d452ca https://www.encodeproject.org/files/ENCFF521QIX/@@download/ENCFF521QIX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF156MYB bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF785LYN, ENCFF898ZMA 170928457 ENCODE Processing Pipeline 6588bac926cc96668536112dc68d01db https://www.encodeproject.org/files/ENCFF156MYB/@@download/ENCFF156MYB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF031RUV bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF785LYN, ENCFF898ZMA 322837923 ENCODE Processing Pipeline 733587aac39a04783f67d7b8c1c8f960 https://www.encodeproject.org/files/ENCFF031RUV/@@download/ENCFF031RUV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF998HJZ bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 5176576 ENCODE Processing Pipeline a2d99ba2a87a699516c2a539ff405c66 https://www.encodeproject.org/files/ENCFF998HJZ/@@download/ENCFF998HJZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF630NFM bed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF574RRB, ENCFF707YNJ, ENCFF998HJZ 276969 ENCODE Processing Pipeline 3b995de8b5a72e9d927f21ec57194d6c https://www.encodeproject.org/files/ENCFF630NFM/@@download/ENCFF630NFM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF776YJF bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF574RRB 12321647 ENCODE Processing Pipeline 0a134eff5fdc93f2968e6b1a9ad8831e https://www.encodeproject.org/files/ENCFF776YJF/@@download/ENCFF776YJF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF838MWP bed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF574RRB, ENCFF707YNJ, ENCFF998HJZ 202172 ENCODE Processing Pipeline 1d5e843d35bc289f4e42170828207fa3 https://www.encodeproject.org/files/ENCFF838MWP/@@download/ENCFF838MWP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF739UET bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF630NFM 641167 ENCODE Processing Pipeline eb1b466029a7f0beae1b9d8c9596dda1 https://www.encodeproject.org/files/ENCFF739UET/@@download/ENCFF739UET.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF264HZR bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF707YNJ 12450464 ENCODE Processing Pipeline 7dce1b579a2eeb2f1857578bb225725f https://www.encodeproject.org/files/ENCFF264HZR/@@download/ENCFF264HZR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF654JPU bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF998HJZ 11983601 ENCODE Processing Pipeline 5f5f3855c10d73f86b895dc6bdd5e392 https://www.encodeproject.org/files/ENCFF654JPU/@@download/ENCFF654JPU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF158UFB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF838MWP 510735 ENCODE Processing Pipeline 295200c1336e6bebe11a7775fd1e58b8 https://www.encodeproject.org/files/ENCFF158UFB/@@download/ENCFF158UFB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF156EYN bed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF003ZQP, ENCFF081TEE, ENCFF140RTC, ENCFF419RSJ 202670 ENCODE Processing Pipeline 544f183928e76915724a217390acf2a5 https://www.encodeproject.org/files/ENCFF156EYN/@@download/ENCFF156EYN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF455TPZ bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 185308336 ENCODE Processing Pipeline 9ce3167678f4a08ef43e7c6e61ff6bc4 https://www.encodeproject.org/files/ENCFF455TPZ/@@download/ENCFF455TPZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF740FMN bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF003ZQP 12368818 ENCODE Processing Pipeline 02411235067f34c341820ddf012c1fcf https://www.encodeproject.org/files/ENCFF740FMN/@@download/ENCFF740FMN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF981AVZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF847DXY 644299 ENCODE Processing Pipeline bc379a9c0beaa8dc48b62970c1a25b91 https://www.encodeproject.org/files/ENCFF981AVZ/@@download/ENCFF981AVZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF355WRB bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF048NRD, ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 170867623 ENCODE Processing Pipeline 83e4d0bcecb0891cd90546a03d0950d2 https://www.encodeproject.org/files/ENCFF355WRB/@@download/ENCFF355WRB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF086FEO bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF048NRD, ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 323029476 ENCODE Processing Pipeline e0d66cc7193332ff65ced1b22cf4d2cd https://www.encodeproject.org/files/ENCFF086FEO/@@download/ENCFF086FEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF003ZQP bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 5228691 ENCODE Processing Pipeline 02d0d22bfba5ecf8e953f59f63664560 https://www.encodeproject.org/files/ENCFF003ZQP/@@download/ENCFF003ZQP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF928JKA bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF140RTC 11965837 ENCODE Processing Pipeline 9d1277b3bc3da716330bc21246bf3e32 https://www.encodeproject.org/files/ENCFF928JKA/@@download/ENCFF928JKA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF847DXY bed narrowPeak optimal idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF003ZQP, ENCFF081TEE, ENCFF140RTC, ENCFF419RSJ 278182 ENCODE Processing Pipeline 50a6df14d58a424817063e12f2a4ce55 https://www.encodeproject.org/files/ENCFF847DXY/@@download/ENCFF847DXY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF140RTC bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF048NRD, ENCFF477ZKJ 5171543 ENCODE Processing Pipeline 2896c4b4db0eac7d336277c7bd816c06 https://www.encodeproject.org/files/ENCFF140RTC/@@download/ENCFF140RTC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF901ZUM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156EYN 511743 ENCODE Processing Pipeline bf6ddbfcdc92358110fa783d9e8530fb https://www.encodeproject.org/files/ENCFF901ZUM/@@download/ENCFF901ZUM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF730IJA bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 189656132 ENCODE Processing Pipeline ce20b9483eaa499174f892a5bf296b0d https://www.encodeproject.org/files/ENCFF730IJA/@@download/ENCFF730IJA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF111ISP bigWig signal p-value ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF048NRD, ENCFF477ZKJ 83085346 ENCODE Processing Pipeline c5903cb870c511ea2d20f33afe704114 https://www.encodeproject.org/files/ENCFF111ISP/@@download/ENCFF111ISP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF291KBU bigBed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF081TEE 12440798 ENCODE Processing Pipeline 516e4d54362b0ad612aa2590f1926b71 https://www.encodeproject.org/files/ENCFF291KBU/@@download/ENCFF291KBU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF958FIU bigWig fold change over control ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF048NRD, ENCFF477ZKJ 144972707 ENCODE Processing Pipeline 973975f72eba48c805b2e3838c83def4 https://www.encodeproject.org/files/ENCFF958FIU/@@download/ENCFF958FIU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF081TEE bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF048NRD, ENCFF477ZKJ, ENCFF634VSH, ENCFF710SMS 6213095 ENCODE Processing Pipeline f4f2a452353d67797f57024e4b81ec6d https://www.encodeproject.org/files/ENCFF081TEE/@@download/ENCFF081TEE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YMM bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 1 500450581 Michael Snyder, Stanford c30e1cc4e5b5c3caa0c8cbe9e7d5f573 https://www.encodeproject.org/files/ENCFF000YMM/@@download/ENCFF000YMM.bam hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF000YMN bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VNB 888508 Michael Snyder, Stanford f26bf6d092006179a52ba12ea7453441 https://www.encodeproject.org/files/ENCFF000YMN/@@download/ENCFF000YMN.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YMO fastq reads ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 958252255 Michael Snyder, Stanford 010beea37851a840f64f311453d5b6d2 https://www.encodeproject.org/files/ENCFF000YMO/@@download/ENCFF000YMO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YMP bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 1 369812191 Michael Snyder, Stanford 13273274672d4b23ae32a165b2ac02b7 https://www.encodeproject.org/files/ENCFF000YMP/@@download/ENCFF000YMP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF000YMR fastq reads ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 711416435 Michael Snyder, Stanford 6f3c8c01db73da671d94d2b4f70758cd https://www.encodeproject.org/files/ENCFF000YMR/@@download/ENCFF000YMR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YMT bigWig signal ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 347733118 Michael Snyder, Stanford 55cd71b1fac4c6ced81c159b7c90dd59 https://www.encodeproject.org/files/ENCFF000YMT/@@download/ENCFF000YMT.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF001VNB bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 359741 Michael Snyder, Stanford 13deddbf404a44f36b3ff0779b88f209 https://www.encodeproject.org/files/ENCFF001VNB/@@download/ENCFF001VNB.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF002CWO bed narrowPeak optimal idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 71329 ENCODE Consortium Analysis Working Group 512f15c00d79972570f34a368bb388d7 https://www.encodeproject.org/files/ENCFF002CWO/@@download/ENCFF002CWO.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF697HTL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE ENCFF002CWO 217575 ENCODE Consortium eba299163a21a7c56a70ae42c84d8a55 https://www.encodeproject.org/files/ENCFF697HTL/@@download/ENCFF697HTL.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF865ISL bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YMR, ENCFF643CGH 555115405 ENCODE Processing Pipeline ecf32b2685e2bf95e6f8e12de6c2e56f https://www.encodeproject.org/files/ENCFF865ISL/@@download/ENCFF865ISL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF818OUC bam unfiltered alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YMR, ENCFF643CGH 824711180 ENCODE Processing Pipeline 7b10ab798e3d5c5676a04ec5eb46e41d https://www.encodeproject.org/files/ENCFF818OUC/@@download/ENCFF818OUC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF790WTE bam unfiltered alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YMO, ENCFF643CGH 1096471481 ENCODE Processing Pipeline 4572306a2546cec206d60e74047c7a93 https://www.encodeproject.org/files/ENCFF790WTE/@@download/ENCFF790WTE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF554BLC bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YMO, ENCFF643CGH 743794253 ENCODE Processing Pipeline 75e43cd8754e723de81a5927a3d6229a https://www.encodeproject.org/files/ENCFF554BLC/@@download/ENCFF554BLC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF265GRP bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YMR, ENCFF807MUK 555520343 ENCODE Processing Pipeline 1bfa7bf5cdf048121cf48d691d3d1ce3 https://www.encodeproject.org/files/ENCFF265GRP/@@download/ENCFF265GRP.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF446YAJ bam unfiltered alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YMO, ENCFF807MUK 1091577871 ENCODE Processing Pipeline 07908bba03b8e65f12b94258e618f91c https://www.encodeproject.org/files/ENCFF446YAJ/@@download/ENCFF446YAJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF054EPN bam unfiltered alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YMR, ENCFF807MUK 821163415 ENCODE Processing Pipeline 93b4406a742b037332def00d8eb2a785 https://www.encodeproject.org/files/ENCFF054EPN/@@download/ENCFF054EPN.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF526XKG bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YMO, ENCFF807MUK 744278179 ENCODE Processing Pipeline 4ef380229811029cc5057f1618f10485 https://www.encodeproject.org/files/ENCFF526XKG/@@download/ENCFF526XKG.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF048AAN bigWig signal p-value ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF554BLC 432779207 ENCODE Processing Pipeline 14e241ac3816205ead918cac8853de44 https://www.encodeproject.org/files/ENCFF048AAN/@@download/ENCFF048AAN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF043UTO bigWig signal p-value ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF865ISL 407660953 ENCODE Processing Pipeline 2382da8fdc5eded3cc9e7f4da9a2f2f9 https://www.encodeproject.org/files/ENCFF043UTO/@@download/ENCFF043UTO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF159XBB bigWig signal p-value ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF554BLC, ENCFF865ISL 579955982 ENCODE Processing Pipeline 51a6398277c0828aa5795fefd6977066 https://www.encodeproject.org/files/ENCFF159XBB/@@download/ENCFF159XBB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF399BIF bigWig fold change over control ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF554BLC 423193632 ENCODE Processing Pipeline 2eabc6fab902369754941dbb2e31e596 https://www.encodeproject.org/files/ENCFF399BIF/@@download/ENCFF399BIF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF539COR bigWig fold change over control ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF865ISL 301963669 ENCODE Processing Pipeline 718260c5a4c4f11aca509521cefc08a3 https://www.encodeproject.org/files/ENCFF539COR/@@download/ENCFF539COR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF527ABX bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF865ISL 4509736 ENCODE Processing Pipeline 66eefbd3751f3d1402300be2c6214cbb https://www.encodeproject.org/files/ENCFF527ABX/@@download/ENCFF527ABX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF453ZWL bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF554BLC, ENCFF865ISL 5324611 ENCODE Processing Pipeline 12e35e15b4a5b53ffbf56298ee356030 https://www.encodeproject.org/files/ENCFF453ZWL/@@download/ENCFF453ZWL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF382JSK bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF554BLC 4589062 ENCODE Processing Pipeline f115a49b163b4a1f690e46e00603fe40 https://www.encodeproject.org/files/ENCFF382JSK/@@download/ENCFF382JSK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF792ZTJ bigWig fold change over control ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF554BLC, ENCFF865ISL 618801315 ENCODE Processing Pipeline 5b87cb35c1cc8e4d33afeb311f1ccb17 https://www.encodeproject.org/files/ENCFF792ZTJ/@@download/ENCFF792ZTJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF037FXU bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF453ZWL 11134850 ENCODE Processing Pipeline 7edc6965743cd3d3102e227f497a9faf https://www.encodeproject.org/files/ENCFF037FXU/@@download/ENCFF037FXU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF126VVH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF408WSW 192542 ENCODE Processing Pipeline 11544024b8624ad6b1dfb21e1f682970 https://www.encodeproject.org/files/ENCFF126VVH/@@download/ENCFF126VVH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF059CYV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF119SCQ 199350 ENCODE Processing Pipeline 5430213aeb9f28faec7164271d8bb840 https://www.encodeproject.org/files/ENCFF059CYV/@@download/ENCFF059CYV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF125BWZ bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF382JSK 10926729 ENCODE Processing Pipeline b0d284af1d037ea0bc74087f19e9fcaa https://www.encodeproject.org/files/ENCFF125BWZ/@@download/ENCFF125BWZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF193DTL bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF527ABX 10597056 ENCODE Processing Pipeline a12ccea55a8cf1086add389f9ff91671 https://www.encodeproject.org/files/ENCFF193DTL/@@download/ENCFF193DTL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF119SCQ bed narrowPeak optimal idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF382JSK, ENCFF419RSJ, ENCFF453ZWL, ENCFF527ABX 72970 ENCODE Processing Pipeline d5791bd9656128411f3090b76911951b https://www.encodeproject.org/files/ENCFF119SCQ/@@download/ENCFF119SCQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF408WSW bed narrowPeak conservative idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF382JSK, ENCFF419RSJ, ENCFF453ZWL, ENCFF527ABX 68263 ENCODE Processing Pipeline 2708307466f54122c6613b2fe38486ec https://www.encodeproject.org/files/ENCFF408WSW/@@download/ENCFF408WSW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF269XAX bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF324CAS 10605353 ENCODE Processing Pipeline 0da749e4c4f536372c8624f670049bff https://www.encodeproject.org/files/ENCFF269XAX/@@download/ENCFF269XAX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF019PEL bed narrowPeak optimal idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF324CAS, ENCFF390VNW, ENCFF670YGF 72723 ENCODE Processing Pipeline 6bef1c87b6be232eb240e302cc14670d https://www.encodeproject.org/files/ENCFF019PEL/@@download/ENCFF019PEL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF390VNW bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF265GRP, ENCFF526XKG, ENCFF710NTS 5448041 ENCODE Processing Pipeline bf008e4c9b2739fea71918698f2b93dc https://www.encodeproject.org/files/ENCFF390VNW/@@download/ENCFF390VNW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF125SMN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF019PEL 197779 ENCODE Processing Pipeline 3309c66c917a756c3d6f1a7b0432ac90 https://www.encodeproject.org/files/ENCFF125SMN/@@download/ENCFF125SMN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF996CPV bigWig fold change over control ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF265GRP, ENCFF526XKG, ENCFF710NTS 603648276 ENCODE Processing Pipeline 6f3f0a3072c084e5c938b3333a63addf https://www.encodeproject.org/files/ENCFF996CPV/@@download/ENCFF996CPV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF122KXZ bigWig signal p-value ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF526XKG, ENCFF710NTS 545291309 ENCODE Processing Pipeline 0764bc54f4a37256452bb8991751832e https://www.encodeproject.org/files/ENCFF122KXZ/@@download/ENCFF122KXZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF224TRP bigWig signal p-value ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF265GRP, ENCFF710NTS 504900323 ENCODE Processing Pipeline e90cbd9a336b73426266158e7cdae6b3 https://www.encodeproject.org/files/ENCFF224TRP/@@download/ENCFF224TRP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF519LUE bed narrowPeak conservative idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF324CAS, ENCFF390VNW, ENCFF670YGF 67367 ENCODE Processing Pipeline 2a9925402b69e9bab5c1fa959eb352fb https://www.encodeproject.org/files/ENCFF519LUE/@@download/ENCFF519LUE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF218ZOH bigWig fold change over control ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF526XKG, ENCFF710NTS 414655231 ENCODE Processing Pipeline be6d1c2db598d42fd2935c8d188e9228 https://www.encodeproject.org/files/ENCFF218ZOH/@@download/ENCFF218ZOH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF390PFQ bigWig signal p-value ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF265GRP, ENCFF526XKG, ENCFF710NTS 540733209 ENCODE Processing Pipeline 3820bd078f312ceb64ee8ed44dab76c6 https://www.encodeproject.org/files/ENCFF390PFQ/@@download/ENCFF390PFQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF159SMP bigWig fold change over control ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF265GRP, ENCFF710NTS 299684083 ENCODE Processing Pipeline c5a2266c138f7e438754fc53b2285d9e https://www.encodeproject.org/files/ENCFF159SMP/@@download/ENCFF159SMP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF670YGF bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF526XKG, ENCFF710NTS 4642099 ENCODE Processing Pipeline 24a9177cb658f07a69141642ad4c3cf1 https://www.encodeproject.org/files/ENCFF670YGF/@@download/ENCFF670YGF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF324CAS bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF265GRP, ENCFF710NTS 4508322 ENCODE Processing Pipeline ddf087dc114613cea7315d513568c461 https://www.encodeproject.org/files/ENCFF324CAS/@@download/ENCFF324CAS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF987UZL bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF670YGF 10954408 ENCODE Processing Pipeline ab0cb498658f4fa938fb5ed83e54c5ae https://www.encodeproject.org/files/ENCFF987UZL/@@download/ENCFF987UZL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF612RYQ bigBed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF390VNW 11139773 ENCODE Processing Pipeline 4bedbd9dee1cf2a1cd2b0c549b9a2d75 https://www.encodeproject.org/files/ENCFF612RYQ/@@download/ENCFF612RYQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF096VSI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF519LUE 189189 ENCODE Processing Pipeline c5ba21e1bb4e6166a77a696842439554 https://www.encodeproject.org/files/ENCFF096VSI/@@download/ENCFF096VSI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000ZCY bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZDJ 362265894 Michael Snyder, Stanford f34cd9ef1a612d0f3d688643270ebb39 https://www.encodeproject.org/files/ENCFF000ZCY/@@download/ENCFF000ZCY.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCZ bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPH 432162 Michael Snyder, Stanford dd8cb5efd8c2548c9b1e97812320e874 https://www.encodeproject.org/files/ENCFF000ZCZ/@@download/ENCFF000ZCZ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDA bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZDK 358733775 Michael Snyder, Stanford 6926eb846aaa2ba516c0e0f8f36d07d2 https://www.encodeproject.org/files/ENCFF000ZDA/@@download/ENCFF000ZDA.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDB bigWig signal ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 454873472 Michael Snyder, Stanford 42fb1e508407ae083040191d6a5f8212 https://www.encodeproject.org/files/ENCFF000ZDB/@@download/ENCFF000ZDB.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZDJ fastq reads ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 848818341 Michael Snyder, Stanford 0d6995b44abfbf619522316bd32c3c43 https://www.encodeproject.org/files/ENCFF000ZDJ/@@download/ENCFF000ZDJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDK fastq reads ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 829087480 Michael Snyder, Stanford 1e36b6132e6349032aa303f7f4ecf29f https://www.encodeproject.org/files/ENCFF000ZDK/@@download/ENCFF000ZDK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VPH bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 183098 Michael Snyder, Stanford ffaffe9000db54e46d06658318118df8 https://www.encodeproject.org/files/ENCFF001VPH/@@download/ENCFF001VPH.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CYP bed narrowPeak optimal idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 82850 ENCODE Consortium Analysis Working Group 23baed3c990373140369f62e3ea7b8d4 https://www.encodeproject.org/files/ENCFF002CYP/@@download/ENCFF002CYP.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF127KWI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYP 275266 ENCODE Consortium 305d84709f8b6b6c4edac61c151969bb https://www.encodeproject.org/files/ENCFF127KWI/@@download/ENCFF127KWI.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF424FKD bam unfiltered alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZDK, ENCFF643CGH 1018153503 ENCODE Processing Pipeline 3c269c810bc423ab1ff816d847a90ea3 https://www.encodeproject.org/files/ENCFF424FKD/@@download/ENCFF424FKD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF420ZVF bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZDK, ENCFF643CGH 658300249 ENCODE Processing Pipeline 69a73b2a3c93a1e2ddc20ec3ef9c80c2 https://www.encodeproject.org/files/ENCFF420ZVF/@@download/ENCFF420ZVF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF241NUY bam unfiltered alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZDJ, ENCFF643CGH 1045308628 ENCODE Processing Pipeline e38271b2aa6ed2e4d0f78bd1a2543a28 https://www.encodeproject.org/files/ENCFF241NUY/@@download/ENCFF241NUY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF434RFX bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZDJ, ENCFF643CGH 664430927 ENCODE Processing Pipeline 58e6e7aebce2f9bf943101a3124815e8 https://www.encodeproject.org/files/ENCFF434RFX/@@download/ENCFF434RFX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF775IQU bam unfiltered alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZDK, ENCFF807MUK 1012789401 ENCODE Processing Pipeline b0a88b236aba4317ff3917189cdb7ef5 https://www.encodeproject.org/files/ENCFF775IQU/@@download/ENCFF775IQU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF842LBP bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZDK, ENCFF807MUK 658689988 ENCODE Processing Pipeline bdd2ebb549ed00c308d41395586ef435 https://www.encodeproject.org/files/ENCFF842LBP/@@download/ENCFF842LBP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF483JQH bam unfiltered alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZDJ, ENCFF807MUK 1039973618 ENCODE Processing Pipeline acc3717252f70fbbd19fc8b26383fe0c https://www.encodeproject.org/files/ENCFF483JQH/@@download/ENCFF483JQH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF851ZZA bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZDJ, ENCFF807MUK 664834462 ENCODE Processing Pipeline 04ce13717d085bc10feb84b9581a1f2a https://www.encodeproject.org/files/ENCFF851ZZA/@@download/ENCFF851ZZA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF242BZV bigWig signal p-value ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF434RFX 432251755 ENCODE Processing Pipeline 4849a99c917db296609767a9713b2acc https://www.encodeproject.org/files/ENCFF242BZV/@@download/ENCFF242BZV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299VHD bigWig signal p-value ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF420ZVF 500869138 ENCODE Processing Pipeline 5a7b7e4f4c51dfbf958126b4eaca02ab https://www.encodeproject.org/files/ENCFF299VHD/@@download/ENCFF299VHD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF881FKP bigWig signal p-value ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF420ZVF, ENCFF434RFX 541682886 ENCODE Processing Pipeline 37eeadd5baafd144901f10ffdedd0b20 https://www.encodeproject.org/files/ENCFF881FKP/@@download/ENCFF881FKP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299KLU bigWig fold change over control ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF420ZVF 332707456 ENCODE Processing Pipeline e810fcc597e22d101b1a9066764f05af https://www.encodeproject.org/files/ENCFF299KLU/@@download/ENCFF299KLU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748TMK bigWig fold change over control ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF434RFX 336581316 ENCODE Processing Pipeline b731e8af0491ee405fcff8e9024dc2fd https://www.encodeproject.org/files/ENCFF748TMK/@@download/ENCFF748TMK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF266FDB bigWig fold change over control ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF420ZVF, ENCFF434RFX 549797384 ENCODE Processing Pipeline 3161841958dce7a3208228c6f0e05abd https://www.encodeproject.org/files/ENCFF266FDB/@@download/ENCFF266FDB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF891RTU bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF434RFX 4123952 ENCODE Processing Pipeline 432c5e28192a686478fcc45a5255b68b https://www.encodeproject.org/files/ENCFF891RTU/@@download/ENCFF891RTU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF616QFY bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF998IVE 11133703 ENCODE Processing Pipeline dc31a9c06972dc42c3a0b918f0a32ef8 https://www.encodeproject.org/files/ENCFF616QFY/@@download/ENCFF616QFY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF420KJG bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF420ZVF 4212444 ENCODE Processing Pipeline 14a60ce2f87ff66cc864b4b3520f09d3 https://www.encodeproject.org/files/ENCFF420KJG/@@download/ENCFF420KJG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498WWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF602YIK 160339 ENCODE Processing Pipeline 32b81475e36b39856533869cd9b459f9 https://www.encodeproject.org/files/ENCFF498WWJ/@@download/ENCFF498WWJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998IVE bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF420ZVF, ENCFF434RFX 4798222 ENCODE Processing Pipeline bf859cab39d5c4220caf0f9ce086909a https://www.encodeproject.org/files/ENCFF998IVE/@@download/ENCFF998IVE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185HTG bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF891RTU 10447715 ENCODE Processing Pipeline de78d1bc226801800c823af39e8cbcd3 https://www.encodeproject.org/files/ENCFF185HTG/@@download/ENCFF185HTG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF834STQ bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420KJG 10572925 ENCODE Processing Pipeline 52c802fbe87a0913d6283d665630aaec https://www.encodeproject.org/files/ENCFF834STQ/@@download/ENCFF834STQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF425FVY bed narrowPeak optimal idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF420KJG, ENCFF891RTU, ENCFF998IVE 64564 ENCODE Processing Pipeline a832fa37d29027be36f00c525b726315 https://www.encodeproject.org/files/ENCFF425FVY/@@download/ENCFF425FVY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF602YIK bed narrowPeak conservative idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF420KJG, ENCFF891RTU, ENCFF998IVE 62768 ENCODE Processing Pipeline 5891db2058400134fe8121810abcd9ac https://www.encodeproject.org/files/ENCFF602YIK/@@download/ENCFF602YIK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF736VEI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF425FVY 163162 ENCODE Processing Pipeline 1ae8f2b8565200b1eda73f7d45e09640 https://www.encodeproject.org/files/ENCFF736VEI/@@download/ENCFF736VEI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF341CPU bigWig signal p-value ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF851ZZA 403244825 ENCODE Processing Pipeline 4a37a7f10e7b2ddc81e79701b4d5d04c https://www.encodeproject.org/files/ENCFF341CPU/@@download/ENCFF341CPU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611OHR bigWig fold change over control ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF851ZZA 330227694 ENCODE Processing Pipeline 3b450b0e845d06e4d3a40e43339ed7dc https://www.encodeproject.org/files/ENCFF611OHR/@@download/ENCFF611OHR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF507QKZ bigWig signal p-value ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF842LBP 500805246 ENCODE Processing Pipeline 40ce856c17bb52f2f14709ead76d422e https://www.encodeproject.org/files/ENCFF507QKZ/@@download/ENCFF507QKZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF842IMI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF150VTD 164528 ENCODE Processing Pipeline 4a4bbe123e53bf88fe54308e81feb063 https://www.encodeproject.org/files/ENCFF842IMI/@@download/ENCFF842IMI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF497XRH bigWig signal p-value ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710NTS, ENCFF842LBP, ENCFF851ZZA 542170277 ENCODE Processing Pipeline 68f954f304a6a5f9baee2376d50982d3 https://www.encodeproject.org/files/ENCFF497XRH/@@download/ENCFF497XRH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF915ZPW bigWig fold change over control ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF842LBP 332679640 ENCODE Processing Pipeline 231859b02955ae5db369bc5161122693 https://www.encodeproject.org/files/ENCFF915ZPW/@@download/ENCFF915ZPW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF129CHM bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710NTS, ENCFF842LBP, ENCFF851ZZA 4868544 ENCODE Processing Pipeline 4e09e34754c699b6f4d5d0aa576ca27c https://www.encodeproject.org/files/ENCFF129CHM/@@download/ENCFF129CHM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF174GFS bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF935ZZG 10537535 ENCODE Processing Pipeline 97d83769aaf7e028441dfaa78d10bdbf https://www.encodeproject.org/files/ENCFF174GFS/@@download/ENCFF174GFS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF605DSA bigWig fold change over control ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710NTS, ENCFF842LBP, ENCFF851ZZA 561236085 ENCODE Processing Pipeline ac3e8acd3cf2ed5c6c08fae2eebe9fc0 https://www.encodeproject.org/files/ENCFF605DSA/@@download/ENCFF605DSA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352CCQ bed narrowPeak conservative idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF129CHM, ENCFF505EIB, ENCFF935ZZG 62769 ENCODE Processing Pipeline 9c8ce7fc9f3d07e1980ecdda9d348cfc https://www.encodeproject.org/files/ENCFF352CCQ/@@download/ENCFF352CCQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF935ZZG bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF851ZZA 4131199 ENCODE Processing Pipeline 6fc0d16772ba997c26d354f701fbefce https://www.encodeproject.org/files/ENCFF935ZZG/@@download/ENCFF935ZZG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF505EIB bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF842LBP 4219487 ENCODE Processing Pipeline de5e49bbd51ef4840243072ad43be632 https://www.encodeproject.org/files/ENCFF505EIB/@@download/ENCFF505EIB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF186PHB bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF505EIB 10576105 ENCODE Processing Pipeline ea8239fba5c70a6bfb03ef129497b2e7 https://www.encodeproject.org/files/ENCFF186PHB/@@download/ENCFF186PHB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282LTR bigBed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129CHM 11187451 ENCODE Processing Pipeline 1c8c342569c7d8d0dafcf3ad00bdce85 https://www.encodeproject.org/files/ENCFF282LTR/@@download/ENCFF282LTR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF399ILC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF352CCQ 159737 ENCODE Processing Pipeline f19a65750d2e68f61aaf0f64885952bc https://www.encodeproject.org/files/ENCFF399ILC/@@download/ENCFF399ILC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF150VTD bed narrowPeak optimal idr thresholded peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF129CHM, ENCFF505EIB, ENCFF935ZZG 66396 ENCODE Processing Pipeline 374d6db908c4b58361da86e304486f3d https://www.encodeproject.org/files/ENCFF150VTD/@@download/ENCFF150VTD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HNX bigBed broadPeak hotspots ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001XRD 2665411 John Stamatoyannopoulos, UW e2cf4a58f4595e63aede584cf6002f2c https://www.encodeproject.org/files/ENCFF001HNX/@@download/ENCFF001HNX.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001HNY bigBed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001XRE 1035102 John Stamatoyannopoulos, UW 59c7a44678851bd6eeae09829a014268 https://www.encodeproject.org/files/ENCFF001HNY/@@download/ENCFF001HNY.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001HNZ bam alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HOE 555081028 John Stamatoyannopoulos, UW 71e45b8525be08dc3d47571ebea735dd https://www.encodeproject.org/files/ENCFF001HNZ/@@download/ENCFF001HNZ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001HOA bigWig raw signal ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 100764561 John Stamatoyannopoulos, UW 1df273d42414c3152d60faa8550f0c82 https://www.encodeproject.org/files/ENCFF001HOA/@@download/ENCFF001HOA.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001HOE fastq reads ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 731731816 John Stamatoyannopoulos, UW 16651c9f969938915cbbd0e04febc3dc https://www.encodeproject.org/files/ENCFF001HOE/@@download/ENCFF001HOE.fastq.gz Illumina Genome Analyzer /files/ENCFF001HON/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XRD bed broadPeak hotspots ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 1844250 John Stamatoyannopoulos, UW d56999319bc430e752e212fc1a031d4c https://www.encodeproject.org/files/ENCFF001XRD/@@download/ENCFF001XRD.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001XRE bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 718569 John Stamatoyannopoulos, UW aacb1925e2474e71d34ee1b580cb620c https://www.encodeproject.org/files/ENCFF001XRE/@@download/ENCFF001XRE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF002DCY bed narrowPeak optimal idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 680211 ENCODE Consortium Analysis Working Group e3c022ea9f7be7acf4d1ea7ccf3b03e6 https://www.encodeproject.org/files/ENCFF002DCY/@@download/ENCFF002DCY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF553CSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF002DCY 1217094 ENCODE Consortium cea63eeb9f09a281cacf5a719a14fe81 https://www.encodeproject.org/files/ENCFF553CSF/@@download/ENCFF553CSF.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF863WTF bam alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HOE, ENCFF807MUK 422442956 ENCODE Processing Pipeline ad14029f5c3cd6680a40725217a9b19b https://www.encodeproject.org/files/ENCFF863WTF/@@download/ENCFF863WTF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF858THX bam unfiltered alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HOE, ENCFF807MUK 781117787 ENCODE Processing Pipeline 26865217c34dc596b40e57172e7540c7 https://www.encodeproject.org/files/ENCFF858THX/@@download/ENCFF858THX.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF403CLR bam unfiltered alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HOE, ENCFF643CGH 783232127 ENCODE Processing Pipeline b7bd55b9f628fd9f0efe9cc4b7f6cdc0 https://www.encodeproject.org/files/ENCFF403CLR/@@download/ENCFF403CLR.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF361TNY bam alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HOE, ENCFF643CGH 422277702 ENCODE Processing Pipeline 62e176131bb09128fc87e95af1146aa4 https://www.encodeproject.org/files/ENCFF361TNY/@@download/ENCFF361TNY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF883SWT bigWig signal p-value ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF357OBP, ENCFF863WTF 326743649 ENCODE Processing Pipeline df026c05b24ac1a940a1481b11ef6f0f https://www.encodeproject.org/files/ENCFF883SWT/@@download/ENCFF883SWT.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF294XKH bigWig fold change over control ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF357OBP, ENCFF863WTF 203560364 ENCODE Processing Pipeline ee0a6304fe8f6350a95054e18f03462d https://www.encodeproject.org/files/ENCFF294XKH/@@download/ENCFF294XKH.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF982EYX bigBed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF017PXX 9155380 ENCODE Processing Pipeline f17fb75581f761b078260844d9a16694 https://www.encodeproject.org/files/ENCFF982EYX/@@download/ENCFF982EYX.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF192WUP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF652MLT 1068971 ENCODE Processing Pipeline 02afda9b684a4be1984bfe125ea0d6a6 https://www.encodeproject.org/files/ENCFF192WUP/@@download/ENCFF192WUP.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF017PXX bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF357OBP, ENCFF863WTF 3710075 ENCODE Processing Pipeline 1729cdd7966de8407ccc6a0f14a7c604 https://www.encodeproject.org/files/ENCFF017PXX/@@download/ENCFF017PXX.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF652MLT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001TDO, ENCFF017PXX 580453 ENCODE Processing Pipeline b583f5727cf5e66c4c9cf96d08a871a1 https://www.encodeproject.org/files/ENCFF652MLT/@@download/ENCFF652MLT.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF194XJV bigBed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF412LSU 9275978 ENCODE Processing Pipeline 44047b035ff036b95e634571998360b9 https://www.encodeproject.org/files/ENCFF194XJV/@@download/ENCFF194XJV.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF030WRN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF273NIW 1104265 ENCODE Processing Pipeline 51a064f159479b9721ecc5840bbbde1a https://www.encodeproject.org/files/ENCFF030WRN/@@download/ENCFF030WRN.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF985OIX bigWig signal p-value ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF342YSK, ENCFF361TNY 371149087 ENCODE Processing Pipeline 0d3b11b44ea7d5b47fd7f2305739c15c https://www.encodeproject.org/files/ENCFF985OIX/@@download/ENCFF985OIX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF412LSU bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF342YSK, ENCFF361TNY 3790897 ENCODE Processing Pipeline 452fded24d35eaa43b68cb8a7537cd5f https://www.encodeproject.org/files/ENCFF412LSU/@@download/ENCFF412LSU.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF380PGD bigWig fold change over control ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF342YSK, ENCFF361TNY 200670093 ENCODE Processing Pipeline 70137cbae36322ef665aa810a6ced52f https://www.encodeproject.org/files/ENCFF380PGD/@@download/ENCFF380PGD.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF273NIW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF412LSU, ENCFF419RSJ 597383 ENCODE Processing Pipeline b3e6f38b80fd787639758423b7ca8943 https://www.encodeproject.org/files/ENCFF273NIW/@@download/ENCFF273NIW.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF000XTW bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XUU 531642250 Michael Snyder, Stanford b728f18bfa20d4ac67ab667f7a06b047 https://www.encodeproject.org/files/ENCFF000XTW/@@download/ENCFF000XTW.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTX bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XVK 543098617 Michael Snyder, Stanford 4d96f81bd85a20866030cad2353f919c https://www.encodeproject.org/files/ENCFF000XTX/@@download/ENCFF000XTX.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTY bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001VKL 4652171 Michael Snyder, Stanford 446fd13daba81c865070c5e960b0b14b https://www.encodeproject.org/files/ENCFF000XTY/@@download/ENCFF000XTY.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUB bigWig signal ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000XTW, ENCFF000XTX 418466156 Michael Snyder, Stanford 186913bd2f0a965e7e43a00baadab31b https://www.encodeproject.org/files/ENCFF000XUB/@@download/ENCFF000XUB.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUU fastq reads ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1097519277 Michael Snyder, Stanford a76974536fe1b18f6fcc451d3222f806 https://www.encodeproject.org/files/ENCFF000XUU/@@download/ENCFF000XUU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVK fastq reads ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1060004096 Michael Snyder, Stanford c5c88ec1f1a4cd4575d1f15a577db3b8 https://www.encodeproject.org/files/ENCFF000XVK/@@download/ENCFF000XVK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKL bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000XTW, ENCFF000XTX 2075529 Michael Snyder, Stanford a0f1f24b7c01d13cd3937e0694b10898 https://www.encodeproject.org/files/ENCFF001VKL/@@download/ENCFF001VKL.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF002CUI bed narrowPeak optimal idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000XTW, ENCFF000XTX 941711 ENCODE Consortium Analysis Working Group f5175a370266f5313c26591a5795d246 https://www.encodeproject.org/files/ENCFF002CUI/@@download/ENCFF002CUI.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF034QXU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF002CUI 2105828 ENCODE Consortium e711342f19d62e6f2a65221d62976dbc https://www.encodeproject.org/files/ENCFF034QXU/@@download/ENCFF034QXU.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF799ELF bam unfiltered alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVK, ENCFF807MUK 1295038162 ENCODE Processing Pipeline fd1332aa33abacc31319e80d6ba85f2b https://www.encodeproject.org/files/ENCFF799ELF/@@download/ENCFF799ELF.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF211KFP bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUU, ENCFF807MUK 926109487 ENCODE Processing Pipeline 96b36854c998d052a1c7ff9e3683aa14 https://www.encodeproject.org/files/ENCFF211KFP/@@download/ENCFF211KFP.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF020TAL bam unfiltered alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUU, ENCFF807MUK 1333990197 ENCODE Processing Pipeline e517d32267f409b38e00c74de088d43b https://www.encodeproject.org/files/ENCFF020TAL/@@download/ENCFF020TAL.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF792OIY bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVK, ENCFF807MUK 894138121 ENCODE Processing Pipeline c7f1ef82bc5e4d34204b11bfd3a928f6 https://www.encodeproject.org/files/ENCFF792OIY/@@download/ENCFF792OIY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF226KME bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF700LQD 11597677 ENCODE Processing Pipeline cd8485804b62b802a7b974a7f9c50289 https://www.encodeproject.org/files/ENCFF226KME/@@download/ENCFF226KME.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF827LKV bigWig signal p-value ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF211KFP 520076227 ENCODE Processing Pipeline bb810684669432070fc9f53dc2f4a4b8 https://www.encodeproject.org/files/ENCFF827LKV/@@download/ENCFF827LKV.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF779IAQ bigWig signal p-value ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF792OIY 576445605 ENCODE Processing Pipeline 9b19ad7855348c502321aefbaf678f70 https://www.encodeproject.org/files/ENCFF779IAQ/@@download/ENCFF779IAQ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF019CEQ bigWig signal p-value ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF211KFP, ENCFF792OIY 730021198 ENCODE Processing Pipeline cd8c9a1aceba124b727d03de03c2c069 https://www.encodeproject.org/files/ENCFF019CEQ/@@download/ENCFF019CEQ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF902OMQ bigWig fold change over control ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF211KFP 503132158 ENCODE Processing Pipeline 9be1de7701a8065a7739a9daaf4444a5 https://www.encodeproject.org/files/ENCFF902OMQ/@@download/ENCFF902OMQ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF754KJX bigWig fold change over control ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF792OIY 468719749 ENCODE Processing Pipeline 36a1c15c5dbbde0515a6c9a13a79e357 https://www.encodeproject.org/files/ENCFF754KJX/@@download/ENCFF754KJX.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF455JLQ bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF227YDJ 11617861 ENCODE Processing Pipeline 0e55f05143c0a806178559cdd0b69bb6 https://www.encodeproject.org/files/ENCFF455JLQ/@@download/ENCFF455JLQ.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF603KXE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF800XTT 1369750 ENCODE Processing Pipeline c2dd94311e3b0daf11f35a222486c19a https://www.encodeproject.org/files/ENCFF603KXE/@@download/ENCFF603KXE.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF227YDJ bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF211KFP 5428595 ENCODE Processing Pipeline 2e18da9b55e25b5f4de4c72d10681cc9 https://www.encodeproject.org/files/ENCFF227YDJ/@@download/ENCFF227YDJ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF422YLS bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF211KFP, ENCFF792OIY 6377767 ENCODE Processing Pipeline d53b27f31fea925ed5dbf8365249d301 https://www.encodeproject.org/files/ENCFF422YLS/@@download/ENCFF422YLS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF700LQD bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF792OIY 5200460 ENCODE Processing Pipeline 79c1c36e79ee772a25be1d5be862c523 https://www.encodeproject.org/files/ENCFF700LQD/@@download/ENCFF700LQD.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF274CWO bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF422YLS 11957069 ENCODE Processing Pipeline a13eb9721166bfa0020021e797879033 https://www.encodeproject.org/files/ENCFF274CWO/@@download/ENCFF274CWO.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF569VYO bed narrowPeak conservative idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF227YDJ, ENCFF422YLS, ENCFF700LQD 807085 ENCODE Processing Pipeline 1b7d0f4417bcb9946c1be6141160ccbb https://www.encodeproject.org/files/ENCFF569VYO/@@download/ENCFF569VYO.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF800XTT bed narrowPeak optimal idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF227YDJ, ENCFF422YLS, ENCFF700LQD 806864 ENCODE Processing Pipeline 438973c4146937122e69e33c208d92a0 https://www.encodeproject.org/files/ENCFF800XTT/@@download/ENCFF800XTT.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF816KVE bigWig fold change over control ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF211KFP, ENCFF792OIY 809341664 ENCODE Processing Pipeline 9975939c9b1971ca1f49b6e5253ca70b https://www.encodeproject.org/files/ENCFF816KVE/@@download/ENCFF816KVE.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF173YTT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF569VYO 1370110 ENCODE Processing Pipeline 7433b6019edc30bd7f182883888d2122 https://www.encodeproject.org/files/ENCFF173YTT/@@download/ENCFF173YTT.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF852UNR bam unfiltered alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVK, ENCFF643CGH 1301388675 ENCODE Processing Pipeline eedbb3fe2c474971f3571bcef1c1080a https://www.encodeproject.org/files/ENCFF852UNR/@@download/ENCFF852UNR.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF397RLJ bam unfiltered alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUU, ENCFF643CGH 1340816652 ENCODE Processing Pipeline 6b50387eea6202dac3961a9058ef997a https://www.encodeproject.org/files/ENCFF397RLJ/@@download/ENCFF397RLJ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF755GBM bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVK, ENCFF643CGH 893680963 ENCODE Processing Pipeline 05ff3c9543e7e1637a6b3054b6bf7261 https://www.encodeproject.org/files/ENCFF755GBM/@@download/ENCFF755GBM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF310RSH bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUU, ENCFF643CGH 925704993 ENCODE Processing Pipeline cb402315d202abb784d266a2d5eabf4e https://www.encodeproject.org/files/ENCFF310RSH/@@download/ENCFF310RSH.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF041DQP bigWig signal p-value ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF310RSH 519940667 ENCODE Processing Pipeline 76b3fbd8954f99e8e2436cb5b3604495 https://www.encodeproject.org/files/ENCFF041DQP/@@download/ENCFF041DQP.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF544BIC bigWig signal p-value ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF755GBM 554808878 ENCODE Processing Pipeline ada998e21be3484a47eb0ab9707e26f5 https://www.encodeproject.org/files/ENCFF544BIC/@@download/ENCFF544BIC.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF119GFX bigWig signal p-value ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF310RSH, ENCFF755GBM 734416766 ENCODE Processing Pipeline ec4f30c8b9d8663677a461efe5dc74b8 https://www.encodeproject.org/files/ENCFF119GFX/@@download/ENCFF119GFX.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF470CWN bigWig fold change over control ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF755GBM 464333479 ENCODE Processing Pipeline 3dc772ac761542403a0f2c729f30203a https://www.encodeproject.org/files/ENCFF470CWN/@@download/ENCFF470CWN.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF309DBR bigWig fold change over control ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF310RSH 496913238 ENCODE Processing Pipeline cdba53fb6813569565698ab223650a9e https://www.encodeproject.org/files/ENCFF309DBR/@@download/ENCFF309DBR.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF931OYF bigWig fold change over control ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF310RSH, ENCFF755GBM 814047939 ENCODE Processing Pipeline dd21fb18d78753b8af61e6a53845faef https://www.encodeproject.org/files/ENCFF931OYF/@@download/ENCFF931OYF.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF910OBA bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF310RSH, ENCFF755GBM 6207446 ENCODE Processing Pipeline d39ad32cbfecffc2ee125827f0f5aff7 https://www.encodeproject.org/files/ENCFF910OBA/@@download/ENCFF910OBA.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF629FTW bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF310RSH 5250936 ENCODE Processing Pipeline 39003a6e5efd205876f7b9b6f634b97e https://www.encodeproject.org/files/ENCFF629FTW/@@download/ENCFF629FTW.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF371ZWB bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF629FTW 11527102 ENCODE Processing Pipeline 7fdce367b29cb7697313565545520fb2 https://www.encodeproject.org/files/ENCFF371ZWB/@@download/ENCFF371ZWB.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF425LEL bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF015GTP 11473241 ENCODE Processing Pipeline 55b8f4134f0aecc80d2f17f808e9c63c https://www.encodeproject.org/files/ENCFF425LEL/@@download/ENCFF425LEL.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF015GTP bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF755GBM 5009147 ENCODE Processing Pipeline 0d0d9459d37db5be7839c9ca56e56119 https://www.encodeproject.org/files/ENCFF015GTP/@@download/ENCFF015GTP.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF861FSM bigBed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF910OBA 11934845 ENCODE Processing Pipeline 72c068bc7eec542dfe42aaacc909e8e3 https://www.encodeproject.org/files/ENCFF861FSM/@@download/ENCFF861FSM.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF770TZL bed narrowPeak optimal idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF015GTP, ENCFF419RSJ, ENCFF629FTW, ENCFF910OBA 808391 ENCODE Processing Pipeline 8d699fef291b6647bf88e4b217996d77 https://www.encodeproject.org/files/ENCFF770TZL/@@download/ENCFF770TZL.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF894AFG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF770TZL 1373429 ENCODE Processing Pipeline 8b9567231dc8579664dd81402656d3ba https://www.encodeproject.org/files/ENCFF894AFG/@@download/ENCFF894AFG.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NYL bigBed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXU 164964 Richard Myers, HAIB ff41c1f3027d01111105849243523904 https://www.encodeproject.org/files/ENCFF000NYL/@@download/ENCFF000NYL.bigBed hg19 archived low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NYM bigBed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXV 175528 Richard Myers, HAIB defaa54ae5bcc6d85119525e17d1c9eb https://www.encodeproject.org/files/ENCFF000NYM/@@download/ENCFF000NYM.bigBed hg19 archived low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NYO bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NYY 1411780147 Richard Myers, HAIB c7dfa02ba121c3f878edefa8386bc53d https://www.encodeproject.org/files/ENCFF000NYO/@@download/ENCFF000NYO.bam hg19 archived low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NYP bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZA 2162215343 Richard Myers, HAIB 50c197eb4b88c636ea5166e0c205140d https://www.encodeproject.org/files/ENCFF000NYP/@@download/ENCFF000NYP.bam hg19 archived low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NYQ bigWig raw signal ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 22370233 Richard Myers, HAIB dbd7d8666cd0fcfeb7022890a573eea1 https://www.encodeproject.org/files/ENCFF000NYQ/@@download/ENCFF000NYQ.bigWig hg19 archived low read length, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NYR bigWig raw signal ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 19002486 Richard Myers, HAIB 0a6f9319e71de87aa2d283a78f01610b https://www.encodeproject.org/files/ENCFF000NYR/@@download/ENCFF000NYR.bigWig hg19 archived low read length, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NYY fastq reads ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1317809671 Richard Myers, HAIB 5e518f0c12b14e002454400f630d7767 https://www.encodeproject.org/files/ENCFF000NYY/@@download/ENCFF000NYY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released low read length, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000NZA fastq reads ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 32 single-ended 2062006233 Richard Myers, HAIB 3a840846a41a3aac8f84c130460222bb https://www.encodeproject.org/files/ENCFF000NZA/@@download/ENCFF000NZA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released low read length, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001TXU bed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 88357 Richard Myers, HAIB 9e99d7487a607fc8583e4c8fb20cf7f4 https://www.encodeproject.org/files/ENCFF001TXU/@@download/ENCFF001TXU.bed.gz hg19 archived low read length, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001TXV bed broadPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 84744 Richard Myers, HAIB aaae43fdd8d0700b27b96f903bf2e297 https://www.encodeproject.org/files/ENCFF001TXV/@@download/ENCFF001TXV.bed.gz hg19 archived low read length, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF386AHN bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF807MUK 340390215 ENCODE Processing Pipeline bc0ecd7ea08abaa5640f1e0b1c142ce3 https://www.encodeproject.org/files/ENCFF386AHN/@@download/ENCFF386AHN.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF400ZBQ bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF807MUK 1238840093 ENCODE Processing Pipeline 4d884c450ea2fde3e9be1a74b92345ad https://www.encodeproject.org/files/ENCFF400ZBQ/@@download/ENCFF400ZBQ.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF941DAK bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF643CGH 1241277873 ENCODE Processing Pipeline 4130f8899fc638c62b75a8d3d4fcfb57 https://www.encodeproject.org/files/ENCFF941DAK/@@download/ENCFF941DAK.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF455QSR bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF643CGH 343341036 ENCODE Processing Pipeline 28fb42f6ab0368bc0e092fb54751b457 https://www.encodeproject.org/files/ENCFF455QSR/@@download/ENCFF455QSR.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF876KTI bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF643CGH 471465252 ENCODE Processing Pipeline 6e2a04a4263b59459407a309082cf709 https://www.encodeproject.org/files/ENCFF876KTI/@@download/ENCFF876KTI.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF540RBQ bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF643CGH 1989235633 ENCODE Processing Pipeline 665a453fe922404539c28c44deb2d302 https://www.encodeproject.org/files/ENCFF540RBQ/@@download/ENCFF540RBQ.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF480ZVD bam unfiltered alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF807MUK 1985651197 ENCODE Processing Pipeline 284614cfcb60d6850470cd5e196d2ea0 https://www.encodeproject.org/files/ENCFF480ZVD/@@download/ENCFF480ZVD.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF259SJI bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF807MUK 468458084 ENCODE Processing Pipeline 1c2a8be0cbaf0f980b167a119bc13f2b https://www.encodeproject.org/files/ENCFF259SJI/@@download/ENCFF259SJI.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF898SKK bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT 540437663 ENCODE Processing Pipeline a5c16e039790bb1fe4432cb56ddb9f01 https://www.encodeproject.org/files/ENCFF898SKK/@@download/ENCFF898SKK.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF425AIF bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF862QZT, ENCFF876KTI 585597953 ENCODE Processing Pipeline 2d3bb71b5c07b37010c5dfb721f460a9 https://www.encodeproject.org/files/ENCFF425AIF/@@download/ENCFF425AIF.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF826FEA bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 550743648 ENCODE Processing Pipeline 494414d11e34b1c0b44b6591db54acf5 https://www.encodeproject.org/files/ENCFF826FEA/@@download/ENCFF826FEA.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF126ZEW bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT, ENCFF876KTI 596584394 ENCODE Processing Pipeline 5d20e1f2f25c06c7c2d4c533b9ad3cf0 https://www.encodeproject.org/files/ENCFF126ZEW/@@download/ENCFF126ZEW.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF405LKD bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 540998135 ENCODE Processing Pipeline a551117f9c76c096698080b112adc161 https://www.encodeproject.org/files/ENCFF405LKD/@@download/ENCFF405LKD.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF203FQH bigWig signal p-value ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SJI, ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 667668367 ENCODE Processing Pipeline 2d6f4478f6e8d706ad35c05afc46c2d2 https://www.encodeproject.org/files/ENCFF203FQH/@@download/ENCFF203FQH.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF141SOO bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF862QZT, ENCFF876KTI 305201830 ENCODE Processing Pipeline 1885f9a2d34097fc86eb897f1f8ea04e https://www.encodeproject.org/files/ENCFF141SOO/@@download/ENCFF141SOO.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF559WHJ bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT 254364590 ENCODE Processing Pipeline 5b41a82bf4fa56620c5b88a47fe48e0e https://www.encodeproject.org/files/ENCFF559WHJ/@@download/ENCFF559WHJ.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF853RLK bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 311878324 ENCODE Processing Pipeline 8c17fcd020f5f912d41a4a9943036e2a https://www.encodeproject.org/files/ENCFF853RLK/@@download/ENCFF853RLK.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF557SNT bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT, ENCFF876KTI 465024555 ENCODE Processing Pipeline ea66a1600e02608c120badceb9ff711a https://www.encodeproject.org/files/ENCFF557SNT/@@download/ENCFF557SNT.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF998SQA bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 260735781 ENCODE Processing Pipeline 0e4ea09e5469a8ab9ffdd90ba93d6387 https://www.encodeproject.org/files/ENCFF998SQA/@@download/ENCFF998SQA.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF430KUN bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289ONG, ENCFF862QZT, ENCFF876KTI 4668465 ENCODE Processing Pipeline fa96a0a34959fcff7bd272a07b9cd100 https://www.encodeproject.org/files/ENCFF430KUN/@@download/ENCFF430KUN.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF137ABA bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT, ENCFF876KTI 5289715 ENCODE Processing Pipeline 7e59419095c3195595a811dac9c6a661 https://www.encodeproject.org/files/ENCFF137ABA/@@download/ENCFF137ABA.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF989HAC bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF430KUN 10841292 ENCODE Processing Pipeline 09da4da25df1898eac74e530ceaa339e https://www.encodeproject.org/files/ENCFF989HAC/@@download/ENCFF989HAC.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF080WIZ bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF455QSR, ENCFF862QZT 3424925 ENCODE Processing Pipeline d3bf696962d290d77c7ef0976a4546d6 https://www.encodeproject.org/files/ENCFF080WIZ/@@download/ENCFF080WIZ.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF833UPI bigWig fold change over control ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SJI, ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 485499071 ENCODE Processing Pipeline 979bc4b6b242545f99022e582a143d6d https://www.encodeproject.org/files/ENCFF833UPI/@@download/ENCFF833UPI.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF594LDC bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF137ABA 11278338 ENCODE Processing Pipeline 5af499ab3a93138b3438dca8ca92b22e https://www.encodeproject.org/files/ENCFF594LDC/@@download/ENCFF594LDC.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF562ZXJ bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 4668469 ENCODE Processing Pipeline ebde3d9c6eff4885283b7b709f7f18d5 https://www.encodeproject.org/files/ENCFF562ZXJ/@@download/ENCFF562ZXJ.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF618GTZ bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF080WIZ 8290273 ENCODE Processing Pipeline a4ea728950743c3dcc1f304197f95efa https://www.encodeproject.org/files/ENCFF618GTZ/@@download/ENCFF618GTZ.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF775RYU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF434NOC 234763 ENCODE Processing Pipeline 48e544db6217d2a0ff6adf58d76e6e03 https://www.encodeproject.org/files/ENCFF775RYU/@@download/ENCFF775RYU.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF434NOC bed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080WIZ, ENCFF137ABA, ENCFF419RSJ, ENCFF430KUN 97032 ENCODE Processing Pipeline faa8fa34e33c61a72e19b471739270ec https://www.encodeproject.org/files/ENCFF434NOC/@@download/ENCFF434NOC.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF274BBE bed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080WIZ, ENCFF137ABA, ENCFF419RSJ, ENCFF430KUN 109254 ENCODE Processing Pipeline fa6628790c3f493dcfca9008a5581857 https://www.encodeproject.org/files/ENCFF274BBE/@@download/ENCFF274BBE.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF022KXM bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 3498445 ENCODE Processing Pipeline 4b1b0e06c290e3bfc70d0f2098bcde1d https://www.encodeproject.org/files/ENCFF022KXM/@@download/ENCFF022KXM.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF454QRR bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF022KXM 8388820 ENCODE Processing Pipeline 13003522923ba442c48eefec72d709df https://www.encodeproject.org/files/ENCFF454QRR/@@download/ENCFF454QRR.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF040RJG bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF632AEM 11280436 ENCODE Processing Pipeline b058ea3b311c0d225ca847a0d55c2d50 https://www.encodeproject.org/files/ENCFF040RJG/@@download/ENCFF040RJG.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF321MSM bigBed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562ZXJ 10848433 ENCODE Processing Pipeline 867aa3d068b0e1a8a7ec7d0e1d8070be https://www.encodeproject.org/files/ENCFF321MSM/@@download/ENCFF321MSM.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF632AEM bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SJI, ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 5291423 ENCODE Processing Pipeline ccc5da720b615fdf4f07b4e11fd69c3f https://www.encodeproject.org/files/ENCFF632AEM/@@download/ENCFF632AEM.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF849CSU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274BBE 250976 ENCODE Processing Pipeline 1093d460a6875bbee104340386bb1643 https://www.encodeproject.org/files/ENCFF849CSU/@@download/ENCFF849CSU.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF936XYD bed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF022KXM, ENCFF562ZXJ, ENCFF632AEM 96483 ENCODE Processing Pipeline 90c0de5c0124c532f655193383893f1d https://www.encodeproject.org/files/ENCFF936XYD/@@download/ENCFF936XYD.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF048JKT bed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF022KXM, ENCFF562ZXJ, ENCFF632AEM 104093 ENCODE Processing Pipeline 821185bde94cd93d206c629d07774040 https://www.encodeproject.org/files/ENCFF048JKT/@@download/ENCFF048JKT.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF420APQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF936XYD 234058 ENCODE Processing Pipeline 3ddc06ba27ea3175d7bb6c3cea9cd1ec https://www.encodeproject.org/files/ENCFF420APQ/@@download/ENCFF420APQ.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF629KKG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF048JKT 244602 ENCODE Processing Pipeline ca641269312852ed4413c0935cac954c https://www.encodeproject.org/files/ENCFF629KKG/@@download/ENCFF629KKG.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WCZ bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000WDC 501361292 Michael Snyder, Stanford 0b54e0bcb68446a33b6ed31fecf7c045 https://www.encodeproject.org/files/ENCFF000WCZ/@@download/ENCFF000WCZ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDA bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000WDE 610604228 Michael Snyder, Stanford 37316deaf6d0948b64f1281654bccc1c https://www.encodeproject.org/files/ENCFF000WDA/@@download/ENCFF000WDA.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDB bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VFG 962421 Michael Snyder, Stanford a68da802fda559a719c95ced117010d2 https://www.encodeproject.org/files/ENCFF000WDB/@@download/ENCFF000WDB.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDC fastq reads ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 831852828 Michael Snyder, Stanford c2e852cd62f94d67cb817c95366fcba7 https://www.encodeproject.org/files/ENCFF000WDC/@@download/ENCFF000WDC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDE fastq reads ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1100259290 Michael Snyder, Stanford 72797d79e586d8b86708b5d3738e6c45 https://www.encodeproject.org/files/ENCFF000WDE/@@download/ENCFF000WDE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDG bigWig signal ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 183362824 Michael Snyder, Stanford 774b2dd55a0258e5552d1b6f078b770b https://www.encodeproject.org/files/ENCFF000WDG/@@download/ENCFF000WDG.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VFG bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 349869 Michael Snyder, Stanford f2b0296023a545c898e691fc6a117336 https://www.encodeproject.org/files/ENCFF001VFG/@@download/ENCFF001VFG.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CPM bed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 272860 ENCODE Consortium Analysis Working Group 9a2d2ac67ccbd57c24a484a18ffba9dd https://www.encodeproject.org/files/ENCFF002CPM/@@download/ENCFF002CPM.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF658RBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CPM 702972 ENCODE Consortium bb242488089831c8dac310e1c2ade1f6 https://www.encodeproject.org/files/ENCFF658RBP/@@download/ENCFF658RBP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF260YKP bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF643CGH 873313762 ENCODE Processing Pipeline a3a96edc12fa1f49b1b046f216f6b12e https://www.encodeproject.org/files/ENCFF260YKP/@@download/ENCFF260YKP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760XFV bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF643CGH 1121474807 ENCODE Processing Pipeline 15865333f194ca2c0d015a44ac38a8f3 https://www.encodeproject.org/files/ENCFF760XFV/@@download/ENCFF760XFV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952XKW bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF643CGH 574489125 ENCODE Processing Pipeline 4c2b13e73e74f24a2738a0d0e3931ec9 https://www.encodeproject.org/files/ENCFF952XKW/@@download/ENCFF952XKW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884HCB bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF643CGH 721550730 ENCODE Processing Pipeline ed93c8e4445becfb6b3d0ec679f36b2b https://www.encodeproject.org/files/ENCFF884HCB/@@download/ENCFF884HCB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF980MUI bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF807MUK 869579005 ENCODE Processing Pipeline 7dfaf0f5987813c0a4fcdc710edfd1dd https://www.encodeproject.org/files/ENCFF980MUI/@@download/ENCFF980MUI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF610LIO bam unfiltered alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF807MUK 1117008738 ENCODE Processing Pipeline f5e804e37dfa3fad56120c2c431b9ea2 https://www.encodeproject.org/files/ENCFF610LIO/@@download/ENCFF610LIO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF372ODE bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF807MUK 574433201 ENCODE Processing Pipeline d5160e5929e52bedd074eb726fcd31f9 https://www.encodeproject.org/files/ENCFF372ODE/@@download/ENCFF372ODE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299WJB bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF807MUK 721801861 ENCODE Processing Pipeline 51e3ae0d00482db6a58c53e2114fb717 https://www.encodeproject.org/files/ENCFF299WJB/@@download/ENCFF299WJB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF871CLE bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 74962641 ENCODE Processing Pipeline b540cc7eb5815cd6fa12d5494c9642bd https://www.encodeproject.org/files/ENCFF871CLE/@@download/ENCFF871CLE.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF219RMT bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF299WJB, ENCFF372ODE, ENCFF545DZO 167672109 ENCODE Processing Pipeline 1eba6606e6f87be89c1e64d867a895cc https://www.encodeproject.org/files/ENCFF219RMT/@@download/ENCFF219RMT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF677WUN bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 248780163 ENCODE Processing Pipeline 0f250049e5e77c61bb45591c4b0e6589 https://www.encodeproject.org/files/ENCFF677WUN/@@download/ENCFF677WUN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF747GCR bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF299WJB, ENCFF372ODE, ENCFF545DZO 486619363 ENCODE Processing Pipeline 2e2350c454f2ea6c0c84dc76db08070f https://www.encodeproject.org/files/ENCFF747GCR/@@download/ENCFF747GCR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF787ANE bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 252657908 ENCODE Processing Pipeline d8c5324224733e1cc2c1d6f39ca1422d https://www.encodeproject.org/files/ENCFF787ANE/@@download/ENCFF787ANE.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604JBA bed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF352QMZ, ENCFF441TSO, ENCFF692VTI 253097 ENCODE Processing Pipeline b21234e67aa21c0142e9f753ca0b3c39 https://www.encodeproject.org/files/ENCFF604JBA/@@download/ENCFF604JBA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF305IXP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF778DJD 655908 ENCODE Processing Pipeline c2cfeab7532194040ef0c050a7a02cd0 https://www.encodeproject.org/files/ENCFF305IXP/@@download/ENCFF305IXP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF692VTI bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 4414224 ENCODE Processing Pipeline c25d5385f6861ecaa2f17068e46a38a9 https://www.encodeproject.org/files/ENCFF692VTI/@@download/ENCFF692VTI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF441TSO bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF299WJB, ENCFF372ODE, ENCFF545DZO 5165368 ENCODE Processing Pipeline 4ce9da46df75eb3fe4853243dcff4208 https://www.encodeproject.org/files/ENCFF441TSO/@@download/ENCFF441TSO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF806NVZ bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 167564100 ENCODE Processing Pipeline 539a337353d137d2fbe6b881de9c712b https://www.encodeproject.org/files/ENCFF806NVZ/@@download/ENCFF806NVZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352QMZ bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 4478096 ENCODE Processing Pipeline 74d91e5d18cd136d4493185a7010994f https://www.encodeproject.org/files/ENCFF352QMZ/@@download/ENCFF352QMZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF502CIU bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF352QMZ 10473312 ENCODE Processing Pipeline 13a14c64a306a1ae221cac890cdb6bcb https://www.encodeproject.org/files/ENCFF502CIU/@@download/ENCFF502CIU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF580QAA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF604JBA 613437 ENCODE Processing Pipeline ce16c5daf5c7fedf43d691f5a7db38e6 https://www.encodeproject.org/files/ENCFF580QAA/@@download/ENCFF580QAA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF915BKR bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF692VTI 10293859 ENCODE Processing Pipeline 5b6f5d8d2d6ce363372305d56ea8acf1 https://www.encodeproject.org/files/ENCFF915BKR/@@download/ENCFF915BKR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF679DRS bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF441TSO 13098777 ENCODE Processing Pipeline 93bf2a556cbcab781979a1a7ad6ae90c https://www.encodeproject.org/files/ENCFF679DRS/@@download/ENCFF679DRS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF778DJD bed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF352QMZ, ENCFF441TSO, ENCFF692VTI 273669 ENCODE Processing Pipeline 838d5be06c1c3bcc99da951b01725845 https://www.encodeproject.org/files/ENCFF778DJD/@@download/ENCFF778DJD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430HVQ bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF952XKW 253766811 ENCODE Processing Pipeline b4771d4d77beeca0513820fdae105685 https://www.encodeproject.org/files/ENCFF430HVQ/@@download/ENCFF430HVQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF453JMH bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF952XKW 4418308 ENCODE Processing Pipeline f9321bb46ca8404037f7ac979252dc97 https://www.encodeproject.org/files/ENCFF453JMH/@@download/ENCFF453JMH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF247DGD bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF884HCB 75060246 ENCODE Processing Pipeline 7bb511143454a1c277d5b55d264454a5 https://www.encodeproject.org/files/ENCFF247DGD/@@download/ENCFF247DGD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF336RUV bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF884HCB 254124756 ENCODE Processing Pipeline 2e1dd20ab80e7dd727718fa082d00e29 https://www.encodeproject.org/files/ENCFF336RUV/@@download/ENCFF336RUV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF109XHK bigWig fold change over control ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF884HCB, ENCFF952XKW 487417894 ENCODE Processing Pipeline f1a8c7ed0767031344c87b8ff9ac18b1 https://www.encodeproject.org/files/ENCFF109XHK/@@download/ENCFF109XHK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF049QIW bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF884HCB 4478735 ENCODE Processing Pipeline 8007bd49ef246e7bd1ad4659d6649939 https://www.encodeproject.org/files/ENCFF049QIW/@@download/ENCFF049QIW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF566YYY bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF952XKW 168248523 ENCODE Processing Pipeline e851a7664618b31c7f9faaa81367bf1d https://www.encodeproject.org/files/ENCFF566YYY/@@download/ENCFF566YYY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF920EHP bigWig signal p-value ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF884HCB, ENCFF952XKW 166380204 ENCODE Processing Pipeline baf2e1aefce638e5eb7d06d49632d0f5 https://www.encodeproject.org/files/ENCFF920EHP/@@download/ENCFF920EHP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF184OOD bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF477ZKJ, ENCFF710SMS, ENCFF884HCB, ENCFF952XKW 5158425 ENCODE Processing Pipeline de1257fee06c22932778959fff88476d https://www.encodeproject.org/files/ENCFF184OOD/@@download/ENCFF184OOD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF057SVP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF050CYK 664290 ENCODE Processing Pipeline 2fe60b2f81fa24889f0e06e3ec9acbfb https://www.encodeproject.org/files/ENCFF057SVP/@@download/ENCFF057SVP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF050CYK bed narrowPeak optimal idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049QIW, ENCFF184OOD, ENCFF419RSJ, ENCFF453JMH 278015 ENCODE Processing Pipeline a64a1d9b30a499f0e1bc2617805d229e https://www.encodeproject.org/files/ENCFF050CYK/@@download/ENCFF050CYK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864KHG bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF453JMH 10313780 ENCODE Processing Pipeline 25272ddebaf70660a4dbb132d432ac44 https://www.encodeproject.org/files/ENCFF864KHG/@@download/ENCFF864KHG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF782LFP bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF049QIW 10481427 ENCODE Processing Pipeline ad53f9e620626fe6973f33d0db61b410 https://www.encodeproject.org/files/ENCFF782LFP/@@download/ENCFF782LFP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF691EPA bigBed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184OOD 13107859 ENCODE Processing Pipeline c2fb9bb3c3d7b19a7547eeccffbfd5c8 https://www.encodeproject.org/files/ENCFF691EPA/@@download/ENCFF691EPA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF549HYB bed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF049QIW, ENCFF184OOD, ENCFF419RSJ, ENCFF453JMH 260217 ENCODE Processing Pipeline 77d62dc7fed15f27b85d8bfa0c77727a https://www.encodeproject.org/files/ENCFF549HYB/@@download/ENCFF549HYB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF499RIP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF549HYB 626553 ENCODE Processing Pipeline 700f1c39b79396be48dc6e1194101d97 https://www.encodeproject.org/files/ENCFF499RIP/@@download/ENCFF499RIP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OBV bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OCE 491135724 Richard Myers, HAIB cb4fed94e02be4ca34824de0f51baa42 https://www.encodeproject.org/files/ENCFF000OBV/@@download/ENCFF000OBV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OBX bigBed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYQ 976445 Richard Myers, HAIB 682160161c51dfd5f78d95bcbf87258a https://www.encodeproject.org/files/ENCFF000OBX/@@download/ENCFF000OBX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OBZ bigBed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYR 1134791 Richard Myers, HAIB 75682dd0ab6d2f84a1b2af3c1e0797d6 https://www.encodeproject.org/files/ENCFF000OBZ/@@download/ENCFF000OBZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OCA bigWig raw signal ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 21962074 Richard Myers, HAIB 516e956e299d581a268df29f877fcb39 https://www.encodeproject.org/files/ENCFF000OCA/@@download/ENCFF000OCA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000OCB bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OCH 882962705 Richard Myers, HAIB ef6427f2b417c38f4d6f1013206e758e https://www.encodeproject.org/files/ENCFF000OCB/@@download/ENCFF000OCB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OCC bigWig raw signal ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 43332415 Richard Myers, HAIB a25912db3e4d82aac8350073b91ed74f https://www.encodeproject.org/files/ENCFF000OCC/@@download/ENCFF000OCC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OCE fastq reads ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 478254246 Richard Myers, HAIB f721fbd5213b3a111ee3940e5736dae5 https://www.encodeproject.org/files/ENCFF000OCE/@@download/ENCFF000OCE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OCH fastq reads ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 993852975 Richard Myers, HAIB 7153b0488cbded3d235bf976f5bb9100 https://www.encodeproject.org/files/ENCFF000OCH/@@download/ENCFF000OCH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001TYQ bed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 522149 Richard Myers, HAIB 1b1302d96ffb5c871b8c48b66a939c65 https://www.encodeproject.org/files/ENCFF001TYQ/@@download/ENCFF001TYQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TYR bed broadPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 674566 Richard Myers, HAIB 531034b4d4c60f1341b804418f7b2b3a https://www.encodeproject.org/files/ENCFF001TYR/@@download/ENCFF001TYR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CHR bed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 784543 ENCODE Consortium Analysis Working Group 7ddac173d34f70fa26a89f569581c19f https://www.encodeproject.org/files/ENCFF002CHR/@@download/ENCFF002CHR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF869VMU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHR 1493578 ENCODE Consortium 06cc25098f4286c992b7235b8fa33f95 https://www.encodeproject.org/files/ENCFF869VMU/@@download/ENCFF869VMU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF901DWV bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF643CGH 582410225 ENCODE Processing Pipeline c15b23e1fb76e8f1a93a1ac262617d6e https://www.encodeproject.org/files/ENCFF901DWV/@@download/ENCFF901DWV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF545ETC bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF643CGH 342142700 ENCODE Processing Pipeline 707837ef99d6cd7ef46216bf4cf79a6b https://www.encodeproject.org/files/ENCFF545ETC/@@download/ENCFF545ETC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF175RHE bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF643CGH 1077232191 ENCODE Processing Pipeline 8f2aeec646a58c785352418914dcd0e5 https://www.encodeproject.org/files/ENCFF175RHE/@@download/ENCFF175RHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF310ZIS bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF643CGH 468026801 ENCODE Processing Pipeline 6d646037df94f8378c442cf792bda946 https://www.encodeproject.org/files/ENCFF310ZIS/@@download/ENCFF310ZIS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF401LTK bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF807MUK 581299426 ENCODE Processing Pipeline 38048145e66ce63f7e9eb889e6f835d2 https://www.encodeproject.org/files/ENCFF401LTK/@@download/ENCFF401LTK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF311CJK bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF807MUK 340589424 ENCODE Processing Pipeline 9405e20e9a0ca9e5f313300b0bdcde8d https://www.encodeproject.org/files/ENCFF311CJK/@@download/ENCFF311CJK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF448FSM bam unfiltered alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF807MUK 1076389205 ENCODE Processing Pipeline f468c96fe93f93560bd8de62c2c6ef1e https://www.encodeproject.org/files/ENCFF448FSM/@@download/ENCFF448FSM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF800DLO bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF807MUK 465654843 ENCODE Processing Pipeline 9d77563737166da7a7c9e2ccf22fd823 https://www.encodeproject.org/files/ENCFF800DLO/@@download/ENCFF800DLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF092ZWW bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF545ETC 327016245 ENCODE Processing Pipeline b6d2bfebb0f7dea84bee203678092029 https://www.encodeproject.org/files/ENCFF092ZWW/@@download/ENCFF092ZWW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF916YVI bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310ZIS, ENCFF488YYE, ENCFF545ETC 366642757 ENCODE Processing Pipeline 33e1d20d32fcc70acecef3a0ff3d9e8c https://www.encodeproject.org/files/ENCFF916YVI/@@download/ENCFF916YVI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF821OON bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310ZIS, ENCFF488YYE, ENCFF545ETC 414493589 ENCODE Processing Pipeline 45f54939ec75d1809fc8472d82da40aa https://www.encodeproject.org/files/ENCFF821OON/@@download/ENCFF821OON.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF646BYO bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310ZIS, ENCFF488YYE 447336137 ENCODE Processing Pipeline 9ddc7345e52e73823ae4e3051e5a34cb https://www.encodeproject.org/files/ENCFF646BYO/@@download/ENCFF646BYO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF564SXM bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310ZIS, ENCFF488YYE 226089649 ENCODE Processing Pipeline db6daacc9f706c138062e26e0f498d43 https://www.encodeproject.org/files/ENCFF564SXM/@@download/ENCFF564SXM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF216MIT bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF545ETC 180915789 ENCODE Processing Pipeline 46d2db492203cfc4d4ec295cd8b984bf https://www.encodeproject.org/files/ENCFF216MIT/@@download/ENCFF216MIT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF104UCF bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF545ETC 3264851 ENCODE Processing Pipeline 4a09e046119b52143964c55b73e10caa https://www.encodeproject.org/files/ENCFF104UCF/@@download/ENCFF104UCF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF919VUH bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310ZIS, ENCFF488YYE, ENCFF545ETC 4726848 ENCODE Processing Pipeline eb17606be848d53688b8343fb22be510 https://www.encodeproject.org/files/ENCFF919VUH/@@download/ENCFF919VUH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF861OTX bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF104UCF 6743274 ENCODE Processing Pipeline 04a5283a5452276160668db67c640a4f https://www.encodeproject.org/files/ENCFF861OTX/@@download/ENCFF861OTX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF218RRQ bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF919VUH 11080610 ENCODE Processing Pipeline 870d53302c2199037ed16b8e5c578944 https://www.encodeproject.org/files/ENCFF218RRQ/@@download/ENCFF218RRQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF618UTS bed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF104UCF, ENCFF215WDM, ENCFF419RSJ, ENCFF919VUH 610915 ENCODE Processing Pipeline 965bd5eae31bc762b487e026a562db94 https://www.encodeproject.org/files/ENCFF618UTS/@@download/ENCFF618UTS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF215WDM bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310ZIS, ENCFF488YYE 4399797 ENCODE Processing Pipeline e6a241eb0e61aeebff1f545877b732c8 https://www.encodeproject.org/files/ENCFF215WDM/@@download/ENCFF215WDM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF330PYA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF618UTS 946806 ENCODE Processing Pipeline 4486c5402c973b9f488907f836db76fc https://www.encodeproject.org/files/ENCFF330PYA/@@download/ENCFF330PYA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF624PCO bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF215WDM 10524340 ENCODE Processing Pipeline 93a566903b255f5dd664a0a5b3329640 https://www.encodeproject.org/files/ENCFF624PCO/@@download/ENCFF624PCO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF654EGO bed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF104UCF, ENCFF215WDM, ENCFF419RSJ, ENCFF919VUH 685326 ENCODE Processing Pipeline 8217bae3a169d4081aa3697ad7b5786d https://www.encodeproject.org/files/ENCFF654EGO/@@download/ENCFF654EGO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF867VSB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF654EGO 1319442 ENCODE Processing Pipeline 7aaf570fd287ec2167b8a00457da4a23 https://www.encodeproject.org/files/ENCFF867VSB/@@download/ENCFF867VSB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF550QIX bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 180533142 ENCODE Processing Pipeline a8310cde1fd2cf272ddd9bcce7382eae https://www.encodeproject.org/files/ENCFF550QIX/@@download/ENCFF550QIX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF756HRE bed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF436OWU, ENCFF510UIU, ENCFF601GLM 611088 ENCODE Processing Pipeline 96cfd0fdf4679678cc42c814594c6c39 https://www.encodeproject.org/files/ENCFF756HRE/@@download/ENCFF756HRE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF312ZNA bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 341316341 ENCODE Processing Pipeline 493540e4ea84767aef9cea76a99145dd https://www.encodeproject.org/files/ENCFF312ZNA/@@download/ENCFF312ZNA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF523HMT bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 381037194 ENCODE Processing Pipeline c474655407124541515aa9248d6cbc41 https://www.encodeproject.org/files/ENCFF523HMT/@@download/ENCFF523HMT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF416LQD bigWig signal p-value ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311CJK, ENCFF800DLO, ENCFF963CVB 472488228 ENCODE Processing Pipeline a680137948d9b4c21b57afc8bbd1d04d https://www.encodeproject.org/files/ENCFF416LQD/@@download/ENCFF416LQD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF582DAX bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 227357584 ENCODE Processing Pipeline 1f80d212cca1d6281701fd488b3cd560 https://www.encodeproject.org/files/ENCFF582DAX/@@download/ENCFF582DAX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF567EGK bigWig fold change over control ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311CJK, ENCFF800DLO, ENCFF963CVB 365022624 ENCODE Processing Pipeline 0d42354e6a29a32a1b848ce67c3756b7 https://www.encodeproject.org/files/ENCFF567EGK/@@download/ENCFF567EGK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF510UIU bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 3261181 ENCODE Processing Pipeline cf4faead6c6f80b199f1a699ec3d60c0 https://www.encodeproject.org/files/ENCFF510UIU/@@download/ENCFF510UIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF436OWU bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 4403785 ENCODE Processing Pipeline a895db5e73e2acf0e8b09774027faccb https://www.encodeproject.org/files/ENCFF436OWU/@@download/ENCFF436OWU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF601GLM bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311CJK, ENCFF800DLO, ENCFF963CVB 4726086 ENCODE Processing Pipeline e687493a5491e033ea4e19851cecc5b1 https://www.encodeproject.org/files/ENCFF601GLM/@@download/ENCFF601GLM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF493CET bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF510UIU 6746754 ENCODE Processing Pipeline 1dd793a4aacf93b3e9bef077a7eee7bd https://www.encodeproject.org/files/ENCFF493CET/@@download/ENCFF493CET.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF532QXH bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF436OWU 10531907 ENCODE Processing Pipeline 8f478daaf379f6659a076e2dbcf9fe3f https://www.encodeproject.org/files/ENCFF532QXH/@@download/ENCFF532QXH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF170SVS bigBed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF601GLM 11080106 ENCODE Processing Pipeline cae3a013430f7f4cb4830731dc7442ff https://www.encodeproject.org/files/ENCFF170SVS/@@download/ENCFF170SVS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF891UAP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF756HRE 946618 ENCODE Processing Pipeline 1cf7d82c46c1a0fc5dfa1429f471f347 https://www.encodeproject.org/files/ENCFF891UAP/@@download/ENCFF891UAP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF753RGL bed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF436OWU, ENCFF510UIU, ENCFF601GLM 688110 ENCODE Processing Pipeline c297cd9f39ea9fa917cc79632b77b70d https://www.encodeproject.org/files/ENCFF753RGL/@@download/ENCFF753RGL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF584PFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF753RGL 1322975 ENCODE Processing Pipeline ca0795c98d007ce58a7a9274d93dfa8b https://www.encodeproject.org/files/ENCFF584PFC/@@download/ENCFF584PFC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000XYO bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLC 1285367 Michael Snyder, Stanford 1f308f6a41abdf810847b92ec666e329 https://www.encodeproject.org/files/ENCFF000XYO/@@download/ENCFF000XYO.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XYP bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XZL 354828945 Michael Snyder, Stanford 97ac5f61b4ccd6e13659b5b3f53f96a5 https://www.encodeproject.org/files/ENCFF000XYP/@@download/ENCFF000XYP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XYQ bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XZI 353320737 Michael Snyder, Stanford 2de2538a395921d0c98e564087328aac https://www.encodeproject.org/files/ENCFF000XYQ/@@download/ENCFF000XYQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XYR bigWig signal ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 420191454 Michael Snyder, Stanford d839e18af31914d52a7c608cd7e1dba2 https://www.encodeproject.org/files/ENCFF000XYR/@@download/ENCFF000XYR.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XZI fastq reads ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 866692444 Michael Snyder, Stanford 088ea135bcb4da9ee1d18dd0d43300e8 https://www.encodeproject.org/files/ENCFF000XZI/@@download/ENCFF000XZI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XZL fastq reads ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1031283288 Michael Snyder, Stanford 8674bd62e748c12be18e6c73a90dd763 https://www.encodeproject.org/files/ENCFF000XZL/@@download/ENCFF000XZL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VLC bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 483311 Michael Snyder, Stanford 6da5869b792d8ca0da8b5eff192ab49f https://www.encodeproject.org/files/ENCFF001VLC/@@download/ENCFF001VLC.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CUW bed narrowPeak optimal idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 347532 ENCODE Consortium Analysis Working Group cdaf88adfab80c521ffb5893d3aa8f32 https://www.encodeproject.org/files/ENCFF002CUW/@@download/ENCFF002CUW.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF908UPV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUW 940560 ENCODE Consortium d0576feca909f9351a7d0b2c59474299 https://www.encodeproject.org/files/ENCFF908UPV/@@download/ENCFF908UPV.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF445HFT bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XZI, ENCFF807MUK 651105809 ENCODE Processing Pipeline 8daea42d1ead4e0c6a1d4f46210bd9ae https://www.encodeproject.org/files/ENCFF445HFT/@@download/ENCFF445HFT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF156XKO bam unfiltered alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XZI, ENCFF807MUK 1029090602 ENCODE Processing Pipeline 243c5752c0336dfc96fe13c1da8778ae https://www.encodeproject.org/files/ENCFF156XKO/@@download/ENCFF156XKO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF082FBL bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XZL, ENCFF807MUK 722239309 ENCODE Processing Pipeline 944310ee25cbc47706641cc7039d440a https://www.encodeproject.org/files/ENCFF082FBL/@@download/ENCFF082FBL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF739QBS bam unfiltered alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XZL, ENCFF807MUK 1212507706 ENCODE Processing Pipeline 9c199d213f11bfb9e83fcf1ac87c7721 https://www.encodeproject.org/files/ENCFF739QBS/@@download/ENCFF739QBS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF966RQD bam unfiltered alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XZI, ENCFF643CGH 1033998923 ENCODE Processing Pipeline a1bbbd35f79458a3abc907bd360eeb52 https://www.encodeproject.org/files/ENCFF966RQD/@@download/ENCFF966RQD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF031LWP bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XZI, ENCFF643CGH 650649037 ENCODE Processing Pipeline 4d17febad8aa54ab687673dcf3df7af1 https://www.encodeproject.org/files/ENCFF031LWP/@@download/ENCFF031LWP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF570NNG bam unfiltered alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XZL, ENCFF643CGH 1218809141 ENCODE Processing Pipeline c1c95a6b62fde4ee724733257a323198 https://www.encodeproject.org/files/ENCFF570NNG/@@download/ENCFF570NNG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF956OLR bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XZL, ENCFF643CGH 721813650 ENCODE Processing Pipeline a41f79ec9f32228d274714c7a9655d1a https://www.encodeproject.org/files/ENCFF956OLR/@@download/ENCFF956OLR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF113DEU bigWig signal p-value ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF082FBL, ENCFF107SKX 505074631 ENCODE Processing Pipeline 4ea6b75d56f0579ae2bf804ba1b26d30 https://www.encodeproject.org/files/ENCFF113DEU/@@download/ENCFF113DEU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF483AQM bigWig signal p-value ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF445HFT 523832366 ENCODE Processing Pipeline 881c850c33c8469fc28408de006d8c90 https://www.encodeproject.org/files/ENCFF483AQM/@@download/ENCFF483AQM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF445DOK bigWig signal p-value ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF082FBL, ENCFF107SKX, ENCFF445HFT 612496626 ENCODE Processing Pipeline dd113e42988af8f281ed9f5eb019b1e8 https://www.encodeproject.org/files/ENCFF445DOK/@@download/ENCFF445DOK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF630QWC bigWig fold change over control ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF082FBL, ENCFF107SKX 401729602 ENCODE Processing Pipeline 25e99d3e681ec59ced7004a1963d210d https://www.encodeproject.org/files/ENCFF630QWC/@@download/ENCFF630QWC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF866DNH bigWig fold change over control ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF445HFT 381958223 ENCODE Processing Pipeline 38bc2c3216bb6eb84869d46ad099cbdd https://www.encodeproject.org/files/ENCFF866DNH/@@download/ENCFF866DNH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF422EPR bigWig fold change over control ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF082FBL, ENCFF107SKX, ENCFF445HFT 656803843 ENCODE Processing Pipeline 954023d706a57104c3599da373224084 https://www.encodeproject.org/files/ENCFF422EPR/@@download/ENCFF422EPR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF075LXO bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF791JVM 11030336 ENCODE Processing Pipeline fa20b6a810ea966238b82d09b1aa6802 https://www.encodeproject.org/files/ENCFF075LXO/@@download/ENCFF075LXO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF415JBR bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF967KDT 13547473 ENCODE Processing Pipeline 53f795ed6caf5b95d0928e93ce84925a https://www.encodeproject.org/files/ENCFF415JBR/@@download/ENCFF415JBR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF645UAN bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF469IRK 11111986 ENCODE Processing Pipeline 597c1271f54700227c6dec06c253ddf1 https://www.encodeproject.org/files/ENCFF645UAN/@@download/ENCFF645UAN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF967KDT bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF082FBL, ENCFF107SKX, ENCFF445HFT 5749989 ENCODE Processing Pipeline efb94c9ee90a8a116c130e33c1dcea20 https://www.encodeproject.org/files/ENCFF967KDT/@@download/ENCFF967KDT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF833LHU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF425TFY 674008 ENCODE Processing Pipeline 934f01f94ae53ade24e010145febc2f7 https://www.encodeproject.org/files/ENCFF833LHU/@@download/ENCFF833LHU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF410SPO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF584CNF 707521 ENCODE Processing Pipeline 37b4f5c834a6aebc45970dcacf1cbe6c https://www.encodeproject.org/files/ENCFF410SPO/@@download/ENCFF410SPO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF584CNF bed narrowPeak optimal idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF469IRK, ENCFF791JVM, ENCFF967KDT 324761 ENCODE Processing Pipeline f69505c8d4f6d551de135c08ff65c0d3 https://www.encodeproject.org/files/ENCFF584CNF/@@download/ENCFF584CNF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF469IRK bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF082FBL, ENCFF107SKX 5135482 ENCODE Processing Pipeline a37810152484723f62e1ff25a439db4c https://www.encodeproject.org/files/ENCFF469IRK/@@download/ENCFF469IRK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF791JVM bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF445HFT 5003262 ENCODE Processing Pipeline 9a625b4583baf5c6496dae9bd382d937 https://www.encodeproject.org/files/ENCFF791JVM/@@download/ENCFF791JVM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF425TFY bed narrowPeak conservative idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF469IRK, ENCFF791JVM, ENCFF967KDT 303749 ENCODE Processing Pipeline d0b824b61e9c3d055fda7bcdfdbed8dd https://www.encodeproject.org/files/ENCFF425TFY/@@download/ENCFF425TFY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF931JMB bigWig signal p-value ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF956OLR 510689146 ENCODE Processing Pipeline e38f76dacd90683f97dff0c1b7324290 https://www.encodeproject.org/files/ENCFF931JMB/@@download/ENCFF931JMB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF320AAR bigWig signal p-value ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF031LWP, ENCFF165KZY, ENCFF956OLR 741602207 ENCODE Processing Pipeline ff1b7f2fb83ca48a2d9942f4a0320a38 https://www.encodeproject.org/files/ENCFF320AAR/@@download/ENCFF320AAR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF565SBG bed narrowPeak conservative idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF223MDO, ENCFF419RSJ, ENCFF550WHD, ENCFF627MGO 305962 ENCODE Processing Pipeline 54ff87b63c74e55d5a451d3f296161a0 https://www.encodeproject.org/files/ENCFF565SBG/@@download/ENCFF565SBG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF870BYS bigWig fold change over control ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF956OLR 409038382 ENCODE Processing Pipeline 9ec53833fa3fb1a0d578ccbbc85f7754 https://www.encodeproject.org/files/ENCFF870BYS/@@download/ENCFF870BYS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF147UHT bigWig fold change over control ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF031LWP, ENCFF165KZY, ENCFF956OLR 654631046 ENCODE Processing Pipeline e73045d4a80cc985bd69b05bcc1d73d3 https://www.encodeproject.org/files/ENCFF147UHT/@@download/ENCFF147UHT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF627MGO bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF956OLR 5135467 ENCODE Processing Pipeline dabef4f830139a1e44dbb1a95465d7c5 https://www.encodeproject.org/files/ENCFF627MGO/@@download/ENCFF627MGO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF474AXO bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF223MDO 10980073 ENCODE Processing Pipeline 7db31ae464a4715299c3a80df588d410 https://www.encodeproject.org/files/ENCFF474AXO/@@download/ENCFF474AXO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF174NJI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF565SBG 677692 ENCODE Processing Pipeline 867fbd1c7e6883af79af1a7b594cb22e https://www.encodeproject.org/files/ENCFF174NJI/@@download/ENCFF174NJI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884QLY bigWig signal p-value ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF031LWP, ENCFF165KZY 581333344 ENCODE Processing Pipeline 67cb3805def5f279af9ef8e1e274c3c1 https://www.encodeproject.org/files/ENCFF884QLY/@@download/ENCFF884QLY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF336NAP bigWig fold change over control ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF031LWP, ENCFF165KZY 389079804 ENCODE Processing Pipeline 333c34d190241f076ccc9842e93854f9 https://www.encodeproject.org/files/ENCFF336NAP/@@download/ENCFF336NAP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF223MDO bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF031LWP, ENCFF165KZY 4911149 ENCODE Processing Pipeline 201936a10c641e8082c9a7b178320351 https://www.encodeproject.org/files/ENCFF223MDO/@@download/ENCFF223MDO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550WHD bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF031LWP, ENCFF165KZY, ENCFF956OLR 5745875 ENCODE Processing Pipeline c12dc9557caaf99b52902cf51165206f https://www.encodeproject.org/files/ENCFF550WHD/@@download/ENCFF550WHD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF023MAK bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF627MGO 11124433 ENCODE Processing Pipeline 951038ada7be9aec1ea7109677122260 https://www.encodeproject.org/files/ENCFF023MAK/@@download/ENCFF023MAK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF263KDS bigBed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF550WHD 13553877 ENCODE Processing Pipeline 8bbd74eb7ea07227bb37239fdf0ec20a https://www.encodeproject.org/files/ENCFF263KDS/@@download/ENCFF263KDS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF534GKQ bed narrowPeak optimal idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF223MDO, ENCFF419RSJ, ENCFF550WHD, ENCFF627MGO 329235 ENCODE Processing Pipeline fddc6dab6d2c682f099ed0317146a5e0 https://www.encodeproject.org/files/ENCFF534GKQ/@@download/ENCFF534GKQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF850IXF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF534GKQ 713842 ENCODE Processing Pipeline ea045fd3377ae7a2dfd149a7690ebb9c https://www.encodeproject.org/files/ENCFF850IXF/@@download/ENCFF850IXF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUR bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YVR 136787371 Michael Snyder, Stanford 602860489c943c9d1a0307792b025257 https://www.encodeproject.org/files/ENCFF000YUR/@@download/ENCFF000YUR.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YUS bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YUU, ENCFF000YUV 233837162 Michael Snyder, Stanford 9026ad5a9e831f159b0d5ca57e3545e3 https://www.encodeproject.org/files/ENCFF000YUS/@@download/ENCFF000YUS.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YUT bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNY 482149 Michael Snyder, Stanford 9fad02ed75b8088a032b608633732680 https://www.encodeproject.org/files/ENCFF000YUT/@@download/ENCFF000YUT.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YUU fastq reads ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 133464797 Michael Snyder, Stanford 23df58803cd76374c1d3d59910f96e8b https://www.encodeproject.org/files/ENCFF000YUU/@@download/ENCFF000YUU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YUW bigWig signal ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 120279750 Michael Snyder, Stanford 25d59cf9c08f567235cf89b6c5c72aeb https://www.encodeproject.org/files/ENCFF000YUW/@@download/ENCFF000YUW.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF000YVR fastq reads ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 615469667 Michael Snyder, Stanford 9b85ad06bf782b60cae46802bc3610d8 https://www.encodeproject.org/files/ENCFF000YVR/@@download/ENCFF000YVR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF001VNY bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 167203 Michael Snyder, Stanford 8f67ba8132ba74601046c928a46fac93 https://www.encodeproject.org/files/ENCFF001VNY/@@download/ENCFF001VNY.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF002CXI bed narrowPeak optimal idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 97329 ENCODE Consortium Analysis Working Group 59e4f965b7bd0a75446915be7160aa9b https://www.encodeproject.org/files/ENCFF002CXI/@@download/ENCFF002CXI.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF000YUV fastq reads ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 544193201 Michael Snyder, Stanford 58c1ff3651e7b6b26924f6cd209d2aa0 https://www.encodeproject.org/files/ENCFF000YUV/@@download/ENCFF000YUV.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released mild to moderate bottlenecking, borderline replicate concordance, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF428UEA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXI 254116 ENCODE Consortium 9e4b8467eece2a756e8ddd11a0f7e736 https://www.encodeproject.org/files/ENCFF428UEA/@@download/ENCFF428UEA.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF287DIZ bam unfiltered alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVR, ENCFF807MUK 639471741 ENCODE Processing Pipeline 9615446e92924ebe1bf5e186b36613af https://www.encodeproject.org/files/ENCFF287DIZ/@@download/ENCFF287DIZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF485LHB bam unfiltered alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YUU, ENCFF000YUV, ENCFF643CGH 711884828 ENCODE Processing Pipeline 6cb4a9d68fb5e0b6378c56e97ab41db4 https://www.encodeproject.org/files/ENCFF485LHB/@@download/ENCFF485LHB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF818QIJ bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YUU, ENCFF000YUV, ENCFF643CGH 297526566 ENCODE Processing Pipeline 49ba6cde7166132e31d8fd74073b8be4 https://www.encodeproject.org/files/ENCFF818QIJ/@@download/ENCFF818QIJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF896HUN bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVR, ENCFF807MUK 170623031 ENCODE Processing Pipeline ed354a7be6ff0abc694ae26deac3c549 https://www.encodeproject.org/files/ENCFF896HUN/@@download/ENCFF896HUN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF332TEB bam unfiltered alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVR, ENCFF643CGH 641082278 ENCODE Processing Pipeline 17e49a95a60fd19be9e3b4a5fac4c2ec https://www.encodeproject.org/files/ENCFF332TEB/@@download/ENCFF332TEB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF363BPK bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVR, ENCFF643CGH 170355286 ENCODE Processing Pipeline b6e984c9b9990a101a4f1c27082f273f https://www.encodeproject.org/files/ENCFF363BPK/@@download/ENCFF363BPK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF354VWW bam unfiltered alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YUU, ENCFF000YUV, ENCFF807MUK 710468458 ENCODE Processing Pipeline c3af1d9a07623cfbbfc1dab72879c26a https://www.encodeproject.org/files/ENCFF354VWW/@@download/ENCFF354VWW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF428ISY bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YUU, ENCFF000YUV, ENCFF807MUK 297859183 ENCODE Processing Pipeline 9777eab0f408d1c9d81e9c7277058f05 https://www.encodeproject.org/files/ENCFF428ISY/@@download/ENCFF428ISY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF818IKR bigWig fold change over control ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ 183091244 ENCODE Processing Pipeline d8e8a51fccd0f2dfc0cb956c4c758a98 https://www.encodeproject.org/files/ENCFF818IKR/@@download/ENCFF818IKR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF003WYE bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF896HUN 1121347 ENCODE Processing Pipeline 0075b41ce937ac2948c49cd47fa765f0 https://www.encodeproject.org/files/ENCFF003WYE/@@download/ENCFF003WYE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF690KLI bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ, ENCFF896HUN 4403531 ENCODE Processing Pipeline cf8271a0bae3c1d1059e3d7faa8121bc https://www.encodeproject.org/files/ENCFF690KLI/@@download/ENCFF690KLI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF826SGQ bed narrowPeak conservative idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003WYE, ENCFF690KLI, ENCFF711NWL 64301 ENCODE Processing Pipeline 13bb9ef075b7cb9d92fcfc2e4c580ea9 https://www.encodeproject.org/files/ENCFF826SGQ/@@download/ENCFF826SGQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF310PTO bigWig signal p-value ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF896HUN 407514177 ENCODE Processing Pipeline 075b3b10e9f655d6a719818d8a658c5e https://www.encodeproject.org/files/ENCFF310PTO/@@download/ENCFF310PTO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF282UAG bigWig signal p-value ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ, ENCFF896HUN 409461517 ENCODE Processing Pipeline 749c28c3d30d9fa9a291962fc85ade9d https://www.encodeproject.org/files/ENCFF282UAG/@@download/ENCFF282UAG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF512DUP bigWig fold change over control ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF896HUN 105195076 ENCODE Processing Pipeline c983787a67a10d7e3a343fd9dd3c1d2c https://www.encodeproject.org/files/ENCFF512DUP/@@download/ENCFF512DUP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF802NVY bigWig fold change over control ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ, ENCFF896HUN 263331557 ENCODE Processing Pipeline f926d61cd253479621cfb1934342584e https://www.encodeproject.org/files/ENCFF802NVY/@@download/ENCFF802NVY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF343BYP bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF690KLI 10563156 ENCODE Processing Pipeline 0857af6deee0420bc4eb8e98e2b54d3b https://www.encodeproject.org/files/ENCFF343BYP/@@download/ENCFF343BYP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF676NIW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF012VES 186579 ENCODE Processing Pipeline 9fb123bc901a725b0279df6e79faf626 https://www.encodeproject.org/files/ENCFF676NIW/@@download/ENCFF676NIW.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF931RFL bigWig signal p-value ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ 376482078 ENCODE Processing Pipeline 814ec9359c06544095d52b5656188160 https://www.encodeproject.org/files/ENCFF931RFL/@@download/ENCFF931RFL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF711NWL bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ 2689320 ENCODE Processing Pipeline 4c85eb9984b66a7cc5fcda6d28d945d0 https://www.encodeproject.org/files/ENCFF711NWL/@@download/ENCFF711NWL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF905WNU bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF003WYE 2554775 ENCODE Processing Pipeline ecd754991b0f2ddc2ad17ee561df22f8 https://www.encodeproject.org/files/ENCFF905WNU/@@download/ENCFF905WNU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF157SWC bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF711NWL 6681687 ENCODE Processing Pipeline f806f5832bcd1a8fdcc7991b9769aaa9 https://www.encodeproject.org/files/ENCFF157SWC/@@download/ENCFF157SWC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF746IDJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF826SGQ 166722 ENCODE Processing Pipeline 9a57764b81416c4dc855d507ed2a50c3 https://www.encodeproject.org/files/ENCFF746IDJ/@@download/ENCFF746IDJ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF012VES bed narrowPeak optimal idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003WYE, ENCFF690KLI, ENCFF711NWL 77635 ENCODE Processing Pipeline ead81452d9d50afa34b4539574d408f5 https://www.encodeproject.org/files/ENCFF012VES/@@download/ENCFF012VES.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF557JCP bigWig signal p-value ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF818QIJ 381285928 ENCODE Processing Pipeline 99eec4dd8ab66b405eb1bd6aa80ad16d https://www.encodeproject.org/files/ENCFF557JCP/@@download/ENCFF557JCP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF558PKR bigWig fold change over control ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF818QIJ 181978817 ENCODE Processing Pipeline d66eb94e2e6f76d7d92ed5ccbe0a8348 https://www.encodeproject.org/files/ENCFF558PKR/@@download/ENCFF558PKR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF910MGU bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF332BFE, ENCFF363BPK 1116964 ENCODE Processing Pipeline b497986ca0dc4a4a60b26727e5906dd2 https://www.encodeproject.org/files/ENCFF910MGU/@@download/ENCFF910MGU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF920JAQ bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF332BFE, ENCFF363BPK, ENCFF818QIJ 4401838 ENCODE Processing Pipeline 71d8f27201b54f61b47e1d71c0daeb04 https://www.encodeproject.org/files/ENCFF920JAQ/@@download/ENCFF920JAQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF295THQ bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF818QIJ 2681698 ENCODE Processing Pipeline 87cfe6d88c47ff80feae009453b182b1 https://www.encodeproject.org/files/ENCFF295THQ/@@download/ENCFF295THQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF811PLX bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF910MGU 2549081 ENCODE Processing Pipeline e6c7289fb0dbc9042cd149bc38a643f2 https://www.encodeproject.org/files/ENCFF811PLX/@@download/ENCFF811PLX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF599MNJ bigWig signal p-value ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF332BFE, ENCFF363BPK 396566833 ENCODE Processing Pipeline 8141e5e18b2c104322296053456ba1ca https://www.encodeproject.org/files/ENCFF599MNJ/@@download/ENCFF599MNJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF483EHO bigWig fold change over control ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF332BFE, ENCFF363BPK 102514586 ENCODE Processing Pipeline 28f9a682ed44b98e4bc3e3048d5c57fa https://www.encodeproject.org/files/ENCFF483EHO/@@download/ENCFF483EHO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF242HPZ bigWig fold change over control ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF332BFE, ENCFF363BPK, ENCFF818QIJ 262742731 ENCODE Processing Pipeline 7191746b1a309d8d219e9780c61039b4 https://www.encodeproject.org/files/ENCFF242HPZ/@@download/ENCFF242HPZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF432BPK bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295THQ 6668019 ENCODE Processing Pipeline ec53bc346ee0de6e846887948c18e472 https://www.encodeproject.org/files/ENCFF432BPK/@@download/ENCFF432BPK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF124MXH bed narrowPeak conservative idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295THQ, ENCFF419RSJ, ENCFF910MGU, ENCFF920JAQ 64184 ENCODE Processing Pipeline c324ff9c00e477a5920fae9ee6f4b9f4 https://www.encodeproject.org/files/ENCFF124MXH/@@download/ENCFF124MXH.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF431SXP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF124MXH 166693 ENCODE Processing Pipeline 2849edb52252b822516913b57d926ec6 https://www.encodeproject.org/files/ENCFF431SXP/@@download/ENCFF431SXP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF302CPE bed narrowPeak optimal idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295THQ, ENCFF419RSJ, ENCFF910MGU, ENCFF920JAQ 79562 ENCODE Processing Pipeline 7edd9048d520370449e8277c99d9e666 https://www.encodeproject.org/files/ENCFF302CPE/@@download/ENCFF302CPE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF833QIQ bigBed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF920JAQ 10569418 ENCODE Processing Pipeline 1d54069c541299bcc775f90482842564 https://www.encodeproject.org/files/ENCFF833QIQ/@@download/ENCFF833QIQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF180VKB bigWig signal p-value ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF332BFE, ENCFF363BPK, ENCFF818QIJ 437258793 ENCODE Processing Pipeline 9a03539ecd14099baaaf11c3ba66c619 https://www.encodeproject.org/files/ENCFF180VKB/@@download/ENCFF180VKB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF916AUG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF302CPE 189494 ENCODE Processing Pipeline 7af22ed31d1e495ba6f95267cf21e904 https://www.encodeproject.org/files/ENCFF916AUG/@@download/ENCFF916AUG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZEP bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 1 625116843 Peggy Farnham, USC 2f62f1772d67a0e4940c1160c179b944 https://www.encodeproject.org/files/ENCFF000ZEP/@@download/ENCFF000ZEP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000ZEQ bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 1 435503152 Peggy Farnham, USC 3014134dc01dc23a88bb1133f6fd2181 https://www.encodeproject.org/files/ENCFF000ZEQ/@@download/ENCFF000ZEQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000ZER bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPO 374899 Peggy Farnham, USC 8066e063b29d4e3b756e4656dc26c962 https://www.encodeproject.org/files/ENCFF000ZER/@@download/ENCFF000ZER.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000ZES fastq reads ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1405531985 Peggy Farnham, USC 398f1a4df912aa88bbd8c21900a20da6 https://www.encodeproject.org/files/ENCFF000ZES/@@download/ENCFF000ZES.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000ZEU fastq reads ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1196410292 Peggy Farnham, USC 7cec7062be221791a27ec954a8fbbc5a https://www.encodeproject.org/files/ENCFF000ZEU/@@download/ENCFF000ZEU.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000ZEW bigWig signal ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 354333464 Peggy Farnham, USC 3c6ccf5d5a6504d8c55943abf9abe380 https://www.encodeproject.org/files/ENCFF000ZEW/@@download/ENCFF000ZEW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001VPO bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 130531 Peggy Farnham, USC 72c40b7f43274ade845df679cb3679b3 https://www.encodeproject.org/files/ENCFF001VPO/@@download/ENCFF001VPO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CYU bed narrowPeak optimal idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 47845 ENCODE Consortium Analysis Working Group fc3a851a27dfec1fdf9cd1eab0a216e3 https://www.encodeproject.org/files/ENCFF002CYU/@@download/ENCFF002CYU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF562VDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYU 207218 ENCODE Consortium 02f63348a5124fc3cd03486f64382ece https://www.encodeproject.org/files/ENCFF562VDR/@@download/ENCFF562VDR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF221SWK bam unfiltered alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZES, ENCFF807MUK 1318565252 ENCODE Processing Pipeline 799d20a0b4e1a2fbdea813f99c274c24 https://www.encodeproject.org/files/ENCFF221SWK/@@download/ENCFF221SWK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF826BOX bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZES, ENCFF807MUK 565653699 ENCODE Processing Pipeline 9d2c7e6cb607b7ee443d82e07d1c2a1c https://www.encodeproject.org/files/ENCFF826BOX/@@download/ENCFF826BOX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF655JKW bigWig fold change over control ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF943KAZ 335357626 ENCODE Processing Pipeline a7b5108ed9487059cac79bc8fee670ca https://www.encodeproject.org/files/ENCFF655JKW/@@download/ENCFF655JKW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF479ZWB bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF826BOX 5855561 ENCODE Processing Pipeline edd9eb1c92b6ea69c50d79c78e91dcc7 https://www.encodeproject.org/files/ENCFF479ZWB/@@download/ENCFF479ZWB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF854CCF bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF943KAZ 6238769 ENCODE Processing Pipeline 31834bde4e421dc304e7711837e58986 https://www.encodeproject.org/files/ENCFF854CCF/@@download/ENCFF854CCF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF904PBE bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF826BOX, ENCFF943KAZ 6744439 ENCODE Processing Pipeline ff87019917a4d03f518d2dd9b1b3cf0a https://www.encodeproject.org/files/ENCFF904PBE/@@download/ENCFF904PBE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF720VTB bigWig signal p-value ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF826BOX 438672965 ENCODE Processing Pipeline 2a8f972587b2e14c451536ca1136b471 https://www.encodeproject.org/files/ENCFF720VTB/@@download/ENCFF720VTB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF689FNP bigWig fold change over control ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF826BOX 421378577 ENCODE Processing Pipeline bb793e72b08d0e3923040d3e4e8a0fa1 https://www.encodeproject.org/files/ENCFF689FNP/@@download/ENCFF689FNP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF943KAZ bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZEU, ENCFF807MUK 481195741 ENCODE Processing Pipeline 65a4d40ae36cf536109bb24ac8d4e1d9 https://www.encodeproject.org/files/ENCFF943KAZ/@@download/ENCFF943KAZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF974NNY bigWig signal p-value ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF943KAZ 390809247 ENCODE Processing Pipeline 260f5ac0e000e7e6546b0ec341afe4fc https://www.encodeproject.org/files/ENCFF974NNY/@@download/ENCFF974NNY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF521HBG bed narrowPeak conservative idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF479ZWB, ENCFF854CCF, ENCFF904PBE 27409 ENCODE Processing Pipeline 91f643a9a0af56abc568a0d97bc3f7f8 https://www.encodeproject.org/files/ENCFF521HBG/@@download/ENCFF521HBG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF344QKL bed narrowPeak optimal idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF479ZWB, ENCFF854CCF, ENCFF904PBE 56693 ENCODE Processing Pipeline e1dcb354f98030f0cad5ea10cb6b8428 https://www.encodeproject.org/files/ENCFF344QKL/@@download/ENCFF344QKL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF459GOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF344QKL 184707 ENCODE Processing Pipeline 9c5bc60b55bb85290be87e2983611bf7 https://www.encodeproject.org/files/ENCFF459GOZ/@@download/ENCFF459GOZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF266CFX bam unfiltered alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZEU, ENCFF807MUK 1074533470 ENCODE Processing Pipeline b13cc015ee7c44a89842596c3d5e7ba1 https://www.encodeproject.org/files/ENCFF266CFX/@@download/ENCFF266CFX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF524CDL bigWig signal p-value ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF826BOX, ENCFF943KAZ 630579408 ENCODE Processing Pipeline d32e9fb2032ee2660bfaf5381f560fc7 https://www.encodeproject.org/files/ENCFF524CDL/@@download/ENCFF524CDL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF296ZAW bigWig fold change over control ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF826BOX, ENCFF943KAZ 617969898 ENCODE Processing Pipeline 10fd2cd6ba2dff3b2990dcb75ba95ae9 https://www.encodeproject.org/files/ENCFF296ZAW/@@download/ENCFF296ZAW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF522AOW bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF479ZWB 13066694 ENCODE Processing Pipeline c65f698c7cb5f89e2d20abb2c10211b8 https://www.encodeproject.org/files/ENCFF522AOW/@@download/ENCFF522AOW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF587XIZ bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF854CCF 12858543 ENCODE Processing Pipeline 050cd5182ef55111e5e1654f3be4d72f https://www.encodeproject.org/files/ENCFF587XIZ/@@download/ENCFF587XIZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF429JXG bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF904PBE 12908081 ENCODE Processing Pipeline 671671e2adc5f5abcfdbf57358484866 https://www.encodeproject.org/files/ENCFF429JXG/@@download/ENCFF429JXG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF377DZZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF521HBG 143484 ENCODE Processing Pipeline 2f5af1f3e3c3b7ef53d4f5c1a6a71376 https://www.encodeproject.org/files/ENCFF377DZZ/@@download/ENCFF377DZZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF444ZUH bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZES, ENCFF643CGH 565142937 ENCODE Processing Pipeline baa717f0a126c769bfeb071f462ce0fb https://www.encodeproject.org/files/ENCFF444ZUH/@@download/ENCFF444ZUH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF447NGX bigWig signal p-value ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF474ETY 418742718 ENCODE Processing Pipeline e04c9c7f62d3f55b0cc95d8efeae6add https://www.encodeproject.org/files/ENCFF447NGX/@@download/ENCFF447NGX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF478NGK bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF444ZUH, ENCFF474ETY 6745206 ENCODE Processing Pipeline b37f0a6959ccead08a926edb7f87b76d https://www.encodeproject.org/files/ENCFF478NGK/@@download/ENCFF478NGK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF305IES bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF478NGK 12897892 ENCODE Processing Pipeline 40987de5ea7ff13579009fbd53f898e4 https://www.encodeproject.org/files/ENCFF305IES/@@download/ENCFF305IES.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF390BXU bed narrowPeak conservative idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419HQM, ENCFF419RSJ, ENCFF478NGK, ENCFF873RKZ 27631 ENCODE Processing Pipeline 52d886e3f89aa5c369051c116fa4fb54 https://www.encodeproject.org/files/ENCFF390BXU/@@download/ENCFF390BXU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF094LYR bigWig signal p-value ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF444ZUH 474809569 ENCODE Processing Pipeline 685ab0f2a5923db8fa5adf59b8fe3844 https://www.encodeproject.org/files/ENCFF094LYR/@@download/ENCFF094LYR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF986CZI bigWig fold change over control ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF444ZUH 416287979 ENCODE Processing Pipeline 592865a198706b9f07fde3d29e97554d https://www.encodeproject.org/files/ENCFF986CZI/@@download/ENCFF986CZI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF788ZTU bigWig signal p-value ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF444ZUH, ENCFF474ETY 629890679 ENCODE Processing Pipeline a096fe8e4b8e962bde65b58a29a1843d https://www.encodeproject.org/files/ENCFF788ZTU/@@download/ENCFF788ZTU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF587ARB bam unfiltered alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZEU, ENCFF643CGH 1077521445 ENCODE Processing Pipeline 83c287dc8f7635a5f52f09e15b5bb45e https://www.encodeproject.org/files/ENCFF587ARB/@@download/ENCFF587ARB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF568ZAY bam unfiltered alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZES, ENCFF643CGH 1323400489 ENCODE Processing Pipeline 5baaa1f541cfa54b8a0ef57d3e134ca0 https://www.encodeproject.org/files/ENCFF568ZAY/@@download/ENCFF568ZAY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF474ETY bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZEU, ENCFF643CGH 480629115 ENCODE Processing Pipeline 046ba9a822d5f314b97558b59c274cc3 https://www.encodeproject.org/files/ENCFF474ETY/@@download/ENCFF474ETY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF022AHF bigWig fold change over control ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF474ETY 332469083 ENCODE Processing Pipeline 2d8a5133847f1c825a8a7cebac6b89e5 https://www.encodeproject.org/files/ENCFF022AHF/@@download/ENCFF022AHF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF767MPH bigWig fold change over control ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF444ZUH, ENCFF474ETY 605247789 ENCODE Processing Pipeline 559fc8f933b67c95dde60c4e343e1f1e https://www.encodeproject.org/files/ENCFF767MPH/@@download/ENCFF767MPH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF221SVP bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF419HQM 13071409 ENCODE Processing Pipeline 2b4caeb40d90456e355a7cf92f2b0b53 https://www.encodeproject.org/files/ENCFF221SVP/@@download/ENCFF221SVP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF087MFW bigBed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF873RKZ 12860851 ENCODE Processing Pipeline e33f6610b7a74ee84a1e815facc7bf5a https://www.encodeproject.org/files/ENCFF087MFW/@@download/ENCFF087MFW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF051AVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF498VQZ 185230 ENCODE Processing Pipeline 8efe077ebb004c7103fc0543e4bd67e2 https://www.encodeproject.org/files/ENCFF051AVQ/@@download/ENCFF051AVQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF873RKZ bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF474ETY 6239690 ENCODE Processing Pipeline 41d6268be360c8888da536d9ddf0f0d9 https://www.encodeproject.org/files/ENCFF873RKZ/@@download/ENCFF873RKZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF558APS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF390BXU 144708 ENCODE Processing Pipeline 505dba2aa832afc006cb0bd814cf3f03 https://www.encodeproject.org/files/ENCFF558APS/@@download/ENCFF558APS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF498VQZ bed narrowPeak optimal idr thresholded peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419HQM, ENCFF419RSJ, ENCFF478NGK, ENCFF873RKZ 56127 ENCODE Processing Pipeline eea2b83acf541e36d2707bc9f0075ad0 https://www.encodeproject.org/files/ENCFF498VQZ/@@download/ENCFF498VQZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF419HQM bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF444ZUH 5863112 ENCODE Processing Pipeline 8e9ed1068975902c98442cff532e21fb https://www.encodeproject.org/files/ENCFF419HQM/@@download/ENCFF419HQM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000ZDX bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 1 485620606 Michael Snyder, Stanford 6d76cacc56d108a04980d30d19cf1388 https://www.encodeproject.org/files/ENCFF000ZDX/@@download/ENCFF000ZDX.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZDY bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPL 2748675 Michael Snyder, Stanford b8c3662e51e27e3c20bc59e88eb8cbea https://www.encodeproject.org/files/ENCFF000ZDY/@@download/ENCFF000ZDY.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZDZ bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 1 651130651 Michael Snyder, Stanford 718c81480ffb5e40f1fa81c1d8eed7de https://www.encodeproject.org/files/ENCFF000ZDZ/@@download/ENCFF000ZDZ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZEA fastq reads ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1480951873 Michael Snyder, Stanford db7f875d9c9469b01777565980897b9d https://www.encodeproject.org/files/ENCFF000ZEA/@@download/ENCFF000ZEA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZEC fastq reads ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1032301049 Michael Snyder, Stanford 7edcb2e487ad6524c11ad3c344620ffd https://www.encodeproject.org/files/ENCFF000ZEC/@@download/ENCFF000ZEC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZEE bigWig signal ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 425147325 Michael Snyder, Stanford 2ca049e6d00939692fe80fbf1ff1fa9e https://www.encodeproject.org/files/ENCFF000ZEE/@@download/ENCFF000ZEE.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VPL bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1294981 Michael Snyder, Stanford 259dc65d0d017eadee8cce89dddddf24 https://www.encodeproject.org/files/ENCFF001VPL/@@download/ENCFF001VPL.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CYR bed narrowPeak optimal idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 686281 ENCODE Consortium Analysis Working Group 0a9d8e90c7bf4abb3e7a2e3320eba6b3 https://www.encodeproject.org/files/ENCFF002CYR/@@download/ENCFF002CYR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF432JDP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYR 1531798 ENCODE Consortium e0f65a162a444716edb04d42be3b79b5 https://www.encodeproject.org/files/ENCFF432JDP/@@download/ENCFF432JDP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF682XGC bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZEC, ENCFF643CGH 787162278 ENCODE Processing Pipeline af150cb077cc0dc0bde92850b6358a02 https://www.encodeproject.org/files/ENCFF682XGC/@@download/ENCFF682XGC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF519ADB bam unfiltered alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZEC, ENCFF643CGH 1154143165 ENCODE Processing Pipeline 9eab1350b1160c716f79245bccb64798 https://www.encodeproject.org/files/ENCFF519ADB/@@download/ENCFF519ADB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF107KAO bam unfiltered alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZEA, ENCFF643CGH 1666353739 ENCODE Processing Pipeline 1d5e64c033affbb6dbf72d8976709484 https://www.encodeproject.org/files/ENCFF107KAO/@@download/ENCFF107KAO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF975ZXB bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZEA, ENCFF643CGH 1163632893 ENCODE Processing Pipeline 7b84762e044235d41aea79208dd53b9e https://www.encodeproject.org/files/ENCFF975ZXB/@@download/ENCFF975ZXB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF095BUY bam unfiltered alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZEC, ENCFF807MUK 1149539744 ENCODE Processing Pipeline 09c6098e39e7bb21a27e9df802f84e6e https://www.encodeproject.org/files/ENCFF095BUY/@@download/ENCFF095BUY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF872IPB bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZEC, ENCFF807MUK 787717478 ENCODE Processing Pipeline 99e7ee2437bc916119657c3ae534af46 https://www.encodeproject.org/files/ENCFF872IPB/@@download/ENCFF872IPB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF701HQG bam unfiltered alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZEA, ENCFF807MUK 1660125991 ENCODE Processing Pipeline c7d64089fe6ed77324cc744de3233a2a https://www.encodeproject.org/files/ENCFF701HQG/@@download/ENCFF701HQG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF347FTA bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZEA, ENCFF807MUK 1164317195 ENCODE Processing Pipeline 86c24af8e5400c15bfcd0cdc25472ccb https://www.encodeproject.org/files/ENCFF347FTA/@@download/ENCFF347FTA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF327TQA bigWig signal p-value ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF682XGC 473952830 ENCODE Processing Pipeline ff62bbf29131d63071e15f5e22f09371 https://www.encodeproject.org/files/ENCFF327TQA/@@download/ENCFF327TQA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780KVE bigWig signal p-value ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF682XGC, ENCFF975ZXB 581646892 ENCODE Processing Pipeline 2e246d529916c95188b31ef0c28a3c47 https://www.encodeproject.org/files/ENCFF780KVE/@@download/ENCFF780KVE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF581UCW bigWig signal p-value ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF975ZXB 544637512 ENCODE Processing Pipeline 8584b0a9fe4c7895d5d0eedf068156a6 https://www.encodeproject.org/files/ENCFF581UCW/@@download/ENCFF581UCW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF779NNV bigWig fold change over control ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF975ZXB 501607548 ENCODE Processing Pipeline cf62a052a7786a03c32e1a066052d252 https://www.encodeproject.org/files/ENCFF779NNV/@@download/ENCFF779NNV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF912GXX bigWig fold change over control ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF682XGC 391759827 ENCODE Processing Pipeline 85037558d2671761363b84b6b5ce2e10 https://www.encodeproject.org/files/ENCFF912GXX/@@download/ENCFF912GXX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF811ZGP bigWig fold change over control ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF682XGC, ENCFF975ZXB 742119892 ENCODE Processing Pipeline 85c1f50390d9a4f01b1869798212603f https://www.encodeproject.org/files/ENCFF811ZGP/@@download/ENCFF811ZGP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF912GFX bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF975ZXB 5230461 ENCODE Processing Pipeline 1dff45d0100d976f37a77ff96ab1320a https://www.encodeproject.org/files/ENCFF912GFX/@@download/ENCFF912GFX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF678KIC bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF912GFX 11190066 ENCODE Processing Pipeline b18180db97fb7f6fb3d4ac61c7354c74 https://www.encodeproject.org/files/ENCFF678KIC/@@download/ENCFF678KIC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF493ZHZ bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF682XGC 4770260 ENCODE Processing Pipeline dfd0acc6803913c793fc368c546744d7 https://www.encodeproject.org/files/ENCFF493ZHZ/@@download/ENCFF493ZHZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF086USH bed narrowPeak conservative idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF256RXW, ENCFF419RSJ, ENCFF493ZHZ, ENCFF912GFX 418038 ENCODE Processing Pipeline 5d148ece198c9a75d566251b85914259 https://www.encodeproject.org/files/ENCFF086USH/@@download/ENCFF086USH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF738AMP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086USH 744935 ENCODE Processing Pipeline 89e1ae25a386f1df0b60c3d25380497b https://www.encodeproject.org/files/ENCFF738AMP/@@download/ENCFF738AMP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF256RXW bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF682XGC, ENCFF975ZXB 2860111 ENCODE Processing Pipeline 3b2de140ca940de34b8947c6639fea71 https://www.encodeproject.org/files/ENCFF256RXW/@@download/ENCFF256RXW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF966QHJ bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF493ZHZ 10883565 ENCODE Processing Pipeline 1c8873bd79ff46bc539beb37a1e32379 https://www.encodeproject.org/files/ENCFF966QHJ/@@download/ENCFF966QHJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF761SGQ bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF256RXW 5339494 ENCODE Processing Pipeline d245d2601a06243271af9d05c91e18be https://www.encodeproject.org/files/ENCFF761SGQ/@@download/ENCFF761SGQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700GZI bed narrowPeak optimal idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF256RXW, ENCFF419RSJ, ENCFF493ZHZ, ENCFF912GFX 506955 ENCODE Processing Pipeline 0763f9b615cf96f8212332eb4a11703f https://www.encodeproject.org/files/ENCFF700GZI/@@download/ENCFF700GZI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF845VPO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF700GZI 866480 ENCODE Processing Pipeline 0806b16365b9580a5cdc24e966f33edd https://www.encodeproject.org/files/ENCFF845VPO/@@download/ENCFF845VPO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF093OOU bigWig signal p-value ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347FTA, ENCFF710NTS 512748008 ENCODE Processing Pipeline 2a7209021d95d50d4ec9b402d5460339 https://www.encodeproject.org/files/ENCFF093OOU/@@download/ENCFF093OOU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF284VVH bigWig signal p-value ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF872IPB 455344436 ENCODE Processing Pipeline ab9070645e7758ec1ffc2cd12032d361 https://www.encodeproject.org/files/ENCFF284VVH/@@download/ENCFF284VVH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF524SLR bigWig fold change over control ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF872IPB 394332400 ENCODE Processing Pipeline 0d1ac6624c20317affcc69d1ffb1788f https://www.encodeproject.org/files/ENCFF524SLR/@@download/ENCFF524SLR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF480IMY bed narrowPeak conservative idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF178ANU, ENCFF971SGR, ENCFF984KWO 413759 ENCODE Processing Pipeline 40b5ab31d087df93584ef56c7b5c71bc https://www.encodeproject.org/files/ENCFF480IMY/@@download/ENCFF480IMY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF718MRX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF480IMY 737517 ENCODE Processing Pipeline 662948da53754725b18d6970f7fdc80c https://www.encodeproject.org/files/ENCFF718MRX/@@download/ENCFF718MRX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF433DSB bigWig signal p-value ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347FTA, ENCFF710NTS, ENCFF872IPB 581899881 ENCODE Processing Pipeline 9b5e98a915e3022a96f35cb350636964 https://www.encodeproject.org/files/ENCFF433DSB/@@download/ENCFF433DSB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF114IWY bed narrowPeak optimal idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF178ANU, ENCFF971SGR, ENCFF984KWO 507074 ENCODE Processing Pipeline 2080efa4f0591f3162e78e92da027eb5 https://www.encodeproject.org/files/ENCFF114IWY/@@download/ENCFF114IWY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF149FQR bigWig fold change over control ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347FTA, ENCFF710NTS 485082952 ENCODE Processing Pipeline 909934c7c349489e35f597d11d32f5d4 https://www.encodeproject.org/files/ENCFF149FQR/@@download/ENCFF149FQR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF165ALS bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF984KWO 5312778 ENCODE Processing Pipeline 7a02f999afc1e133dce961b49471d6c3 https://www.encodeproject.org/files/ENCFF165ALS/@@download/ENCFF165ALS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF178ANU bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF872IPB 4771447 ENCODE Processing Pipeline c491087f20ab9c04bfa876874b59502c https://www.encodeproject.org/files/ENCFF178ANU/@@download/ENCFF178ANU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF227SIP bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF971SGR 11137591 ENCODE Processing Pipeline e88840f487e5d74f0c4828ead5c5c465 https://www.encodeproject.org/files/ENCFF227SIP/@@download/ENCFF227SIP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF178RYF bigWig fold change over control ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347FTA, ENCFF710NTS, ENCFF872IPB 757448804 ENCODE Processing Pipeline 0dc8bf06da2bd379b46ed7b0869bc7d1 https://www.encodeproject.org/files/ENCFF178RYF/@@download/ENCFF178RYF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF971SGR bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347FTA, ENCFF710NTS 5103569 ENCODE Processing Pipeline db8c61fb2f09825b33c89d66fc02a24a https://www.encodeproject.org/files/ENCFF971SGR/@@download/ENCFF971SGR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF984KWO bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347FTA, ENCFF710NTS, ENCFF872IPB 2847576 ENCODE Processing Pipeline f52f093100b1ca7d42534ce5b44d7c9c https://www.encodeproject.org/files/ENCFF984KWO/@@download/ENCFF984KWO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF468SUD bigBed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF178ANU 10869730 ENCODE Processing Pipeline e0a85bd6d35f7a5c314c424ecff4a017 https://www.encodeproject.org/files/ENCFF468SUD/@@download/ENCFF468SUD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976GGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114IWY 866225 ENCODE Processing Pipeline 94055f585bf73370ea61598a98c9806b https://www.encodeproject.org/files/ENCFF976GGT/@@download/ENCFF976GGT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VVE bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 1 570761577 Michael Snyder, Stanford 35349527985f25dace4839f66616d291 https://www.encodeproject.org/files/ENCFF000VVE/@@download/ENCFF000VVE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VVF bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VEH 162397 Michael Snyder, Stanford c5b218ebc3a66738b5fdad734c33485f https://www.encodeproject.org/files/ENCFF000VVF/@@download/ENCFF000VVF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VVG fastq reads ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 977347482 Michael Snyder, Stanford 046febef41458320ae41bcabb0ed76d7 https://www.encodeproject.org/files/ENCFF000VVG/@@download/ENCFF000VVG.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWF/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VVI fastq reads ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1039753663 Michael Snyder, Stanford e671f4b2300c1f29c3172b3cfd0bd162 https://www.encodeproject.org/files/ENCFF000VVI/@@download/ENCFF000VVI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWH/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VVK bigWig signal ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 657724635 Michael Snyder, Stanford f24daba4abdd9cbb7c633a21791de4cf https://www.encodeproject.org/files/ENCFF000VVK/@@download/ENCFF000VVK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VVL bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 1 1333800515 Michael Snyder, Stanford 76b83d67741fbfbc7f5123cf14f0d063 https://www.encodeproject.org/files/ENCFF000VVL/@@download/ENCFF000VVL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VEH bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 43117 Michael Snyder, Stanford 846ae6723c2d5f31c74ce7cdb260b991 https://www.encodeproject.org/files/ENCFF001VEH/@@download/ENCFF001VEH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF403OML bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF643CGH 773441176 ENCODE Processing Pipeline fb6911f5f8786bd415490063df667d49 https://www.encodeproject.org/files/ENCFF403OML/@@download/ENCFF403OML.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF180DFG bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF643CGH 1107862636 ENCODE Processing Pipeline b5f46a25c64774daee2d1759613084ef https://www.encodeproject.org/files/ENCFF180DFG/@@download/ENCFF180DFG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF166EOU bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF643CGH 1326491450 ENCODE Processing Pipeline 28cafc62aed4c7c246741a6f9484a0cf https://www.encodeproject.org/files/ENCFF166EOU/@@download/ENCFF166EOU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361YDK bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF643CGH 863122819 ENCODE Processing Pipeline ac3d118bfd55bc69cf371451af5f3fe9 https://www.encodeproject.org/files/ENCFF361YDK/@@download/ENCFF361YDK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF063WPO bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF807MUK 1103765803 ENCODE Processing Pipeline fd2c414913774cef83dc62d0147bcdfb https://www.encodeproject.org/files/ENCFF063WPO/@@download/ENCFF063WPO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384RBC bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF807MUK 773126796 ENCODE Processing Pipeline cd6d87182ddaa5d11d34523d1c12df9c https://www.encodeproject.org/files/ENCFF384RBC/@@download/ENCFF384RBC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF329PQZ bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF807MUK 861764562 ENCODE Processing Pipeline 93e97c58d9f3f25aaaf0cf44e23d68c5 https://www.encodeproject.org/files/ENCFF329PQZ/@@download/ENCFF329PQZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF790QIK bam unfiltered alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF807MUK 1320200555 ENCODE Processing Pipeline e540dc53d88873e6e641dca9204a1e42 https://www.encodeproject.org/files/ENCFF790QIK/@@download/ENCFF790QIK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381RLE bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF403OML, ENCFF450WED, ENCFF579QDW 419219073 ENCODE Processing Pipeline 0d3f08ab30f56b1e617b0e0265f17167 https://www.encodeproject.org/files/ENCFF381RLE/@@download/ENCFF381RLE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF252IHB bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF361YDK, ENCFF450WED, ENCFF579QDW 468787904 ENCODE Processing Pipeline e4704f8c23d1995b0c438b36c73bdcb3 https://www.encodeproject.org/files/ENCFF252IHB/@@download/ENCFF252IHB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF210OLZ bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF361YDK, ENCFF403OML, ENCFF450WED, ENCFF579QDW 501324119 ENCODE Processing Pipeline 529c966efc9d63a1a997a34155eae795 https://www.encodeproject.org/files/ENCFF210OLZ/@@download/ENCFF210OLZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF877FVN bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF403OML, ENCFF450WED, ENCFF579QDW 397813578 ENCODE Processing Pipeline f63ba74f4822ea64fe852538e61cb66c https://www.encodeproject.org/files/ENCFF877FVN/@@download/ENCFF877FVN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884PSQ bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF403OML, ENCFF450WED, ENCFF579QDW 4754835 ENCODE Processing Pipeline 948814f77dce7d4597b16aad1f263a4d https://www.encodeproject.org/files/ENCFF884PSQ/@@download/ENCFF884PSQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF889SRN bed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF039UZO, ENCFF419RSJ, ENCFF884PSQ, ENCFF935YJA 69931 ENCODE Processing Pipeline 8f7bf7487183bb6dae71817d31633f4e https://www.encodeproject.org/files/ENCFF889SRN/@@download/ENCFF889SRN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF960DMZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF889SRN 193176 ENCODE Processing Pipeline e6b24b8fa770a179b5699b8855650c3e https://www.encodeproject.org/files/ENCFF960DMZ/@@download/ENCFF960DMZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF874VBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF722LJP 231671 ENCODE Processing Pipeline 3990f5886066c0385c599bf99472b44a https://www.encodeproject.org/files/ENCFF874VBP/@@download/ENCFF874VBP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF355OHN bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF361YDK, ENCFF450WED, ENCFF579QDW 416143585 ENCODE Processing Pipeline ad9bf1766598dd4a8a6861e41dba3ffd https://www.encodeproject.org/files/ENCFF355OHN/@@download/ENCFF355OHN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF722LJP bed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF039UZO, ENCFF419RSJ, ENCFF884PSQ, ENCFF935YJA 93354 ENCODE Processing Pipeline 1bf7b0d14a0396216a83bea7edfd8bd1 https://www.encodeproject.org/files/ENCFF722LJP/@@download/ENCFF722LJP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039UZO bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF361YDK, ENCFF403OML, ENCFF450WED, ENCFF579QDW 5364189 ENCODE Processing Pipeline 3d4abbf91c62dfab7074b43993fa5f70 https://www.encodeproject.org/files/ENCFF039UZO/@@download/ENCFF039UZO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF120DNO bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF935YJA 10754255 ENCODE Processing Pipeline 95b88933f9c598042712bcf7fe76f737 https://www.encodeproject.org/files/ENCFF120DNO/@@download/ENCFF120DNO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF927RKI bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF039UZO 11287022 ENCODE Processing Pipeline b0b883576496a2cd3e6671c92564e874 https://www.encodeproject.org/files/ENCFF927RKI/@@download/ENCFF927RKI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF440TNS bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF361YDK, ENCFF403OML, ENCFF450WED, ENCFF579QDW 691084977 ENCODE Processing Pipeline 247a2cfe8a316c1a84089b68568c1ed0 https://www.encodeproject.org/files/ENCFF440TNS/@@download/ENCFF440TNS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF935YJA bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF361YDK, ENCFF450WED, ENCFF579QDW 4305830 ENCODE Processing Pipeline 26a7de6c0203a59478193f1150c13769 https://www.encodeproject.org/files/ENCFF935YJA/@@download/ENCFF935YJA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF661EHU bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF884PSQ 11059788 ENCODE Processing Pipeline 75230e01b499b527de1c8161cfd82831 https://www.encodeproject.org/files/ENCFF661EHU/@@download/ENCFF661EHU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF328WHX bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 395797208 ENCODE Processing Pipeline 936de70d72749507e39485f9ad3d4f30 https://www.encodeproject.org/files/ENCFF328WHX/@@download/ENCFF328WHX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF809SWD bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 489863064 ENCODE Processing Pipeline aa4478ef98b693dea49975b1cc54ceb7 https://www.encodeproject.org/files/ENCFF809SWD/@@download/ENCFF809SWD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169WVN bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 468559708 ENCODE Processing Pipeline 69b8bbd5a6cf5b2c3212cc20ee05fd40 https://www.encodeproject.org/files/ENCFF169WVN/@@download/ENCFF169WVN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430QIK bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 4342082 ENCODE Processing Pipeline 0e2141abcbdb75330819f35685b60e9f https://www.encodeproject.org/files/ENCFF430QIK/@@download/ENCFF430QIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF376BVD bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF894NTO 11283310 ENCODE Processing Pipeline ebaa9bcf7d84b29505d5a4043d5759fc https://www.encodeproject.org/files/ENCFF376BVD/@@download/ENCFF376BVD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF984LWJ bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 421402939 ENCODE Processing Pipeline f0c406c947c771c153acf11b7e0151ac https://www.encodeproject.org/files/ENCFF984LWJ/@@download/ENCFF984LWJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF927WFK bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 4742873 ENCODE Processing Pipeline dec30187d31bd754807fc4bf02bebd8d https://www.encodeproject.org/files/ENCFF927WFK/@@download/ENCFF927WFK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF195PBG bed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF430QIK, ENCFF894NTO, ENCFF927WFK 93614 ENCODE Processing Pipeline 3efe3e9ba0dd7bc225ff4fec1d74a0a8 https://www.encodeproject.org/files/ENCFF195PBG/@@download/ENCFF195PBG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF455CRV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF195PBG 231536 ENCODE Processing Pipeline 9c42ce3107f31ce80adb926ea3941700 https://www.encodeproject.org/files/ENCFF455CRV/@@download/ENCFF455CRV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF774MPS bigWig fold change over control ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW, ENCFF384RBC 703460902 ENCODE Processing Pipeline 6cbb20aa86e40a08b72d3c27f6a3cdcb https://www.encodeproject.org/files/ENCFF774MPS/@@download/ENCFF774MPS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF894NTO bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW, ENCFF384RBC 5410801 ENCODE Processing Pipeline 5d593f5f99469bae6cec0a6dd7f0a124 https://www.encodeproject.org/files/ENCFF894NTO/@@download/ENCFF894NTO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF697QWK bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF927WFK 11054060 ENCODE Processing Pipeline 22ba076eb6eaa0cce633192231f38eaf https://www.encodeproject.org/files/ENCFF697QWK/@@download/ENCFF697QWK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF626NOD bigBed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF430QIK 10804188 ENCODE Processing Pipeline 111f8bd14ddffd364ed9a84391ec4d81 https://www.encodeproject.org/files/ENCFF626NOD/@@download/ENCFF626NOD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF264IQF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF077VXQ 198617 ENCODE Processing Pipeline bc6f9b8ee3d20a18b50e827ca35a9a67 https://www.encodeproject.org/files/ENCFF264IQF/@@download/ENCFF264IQF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF316RTM bigWig signal p-value ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW, ENCFF384RBC 527815400 ENCODE Processing Pipeline 9e6f58f359cc0b0979951af6bd10cc3e https://www.encodeproject.org/files/ENCFF316RTM/@@download/ENCFF316RTM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF077VXQ bed narrowPeak conservative idr thresholded peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF430QIK, ENCFF894NTO, ENCFF927WFK 74080 ENCODE Processing Pipeline 9f203d159d3d9d32afa28c108c423036 https://www.encodeproject.org/files/ENCFF077VXQ/@@download/ENCFF077VXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF610JND fastq reads ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 2135670570 Richard Myers, HAIB e95bb391dcd94056fe51e2d1e53cdd45 https://www.encodeproject.org/files/ENCFF610JND/@@download/ENCFF610JND.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF108FBF bam unfiltered alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF610JND, ENCFF643CGH 2459261678 ENCODE Processing Pipeline 04ac1a6b05bae79f3e5fa11e29e81847 https://www.encodeproject.org/files/ENCFF108FBF/@@download/ENCFF108FBF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF724HWA bam unfiltered alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF610JND, ENCFF807MUK 2453810584 ENCODE Processing Pipeline 427ac82fc3cdfc89fb2c93ae0baeb411 https://www.encodeproject.org/files/ENCFF724HWA/@@download/ENCFF724HWA.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF372TQJ bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF610JND, ENCFF643CGH 1965070839 ENCODE Processing Pipeline 0443b28151bf653f90851ebf61d4d533 https://www.encodeproject.org/files/ENCFF372TQJ/@@download/ENCFF372TQJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF764AHB bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF610JND, ENCFF807MUK 1964058670 ENCODE Processing Pipeline 04ca7fb54375c387447b26567cc3369f https://www.encodeproject.org/files/ENCFF764AHB/@@download/ENCFF764AHB.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF570AAN fastq reads ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1620280146 Richard Myers, HAIB 4bf6d50a12124469c0048e22aa3158c1 https://www.encodeproject.org/files/ENCFF570AAN/@@download/ENCFF570AAN.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF645ARX bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF570AAN, ENCFF643CGH 1390528072 ENCODE Processing Pipeline 2f8bf169f370198151c4b3806211f2e3 https://www.encodeproject.org/files/ENCFF645ARX/@@download/ENCFF645ARX.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF331MQR bam unfiltered alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF570AAN, ENCFF643CGH 1876087175 ENCODE Processing Pipeline e4e1ca0d1e6fddc7f6cddc34f23d91b4 https://www.encodeproject.org/files/ENCFF331MQR/@@download/ENCFF331MQR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF474VJF bam unfiltered alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF570AAN, ENCFF807MUK 1872020619 ENCODE Processing Pipeline 9c0db84be40a6867d552a24723176028 https://www.encodeproject.org/files/ENCFF474VJF/@@download/ENCFF474VJF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF430YAL bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF570AAN, ENCFF807MUK 1389790198 ENCODE Processing Pipeline 6819bc2e16b1366e7e6e523a78dbc5b7 https://www.encodeproject.org/files/ENCFF430YAL/@@download/ENCFF430YAL.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF194LZR bigWig signal p-value ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF430YAL 536742785 ENCODE Processing Pipeline 54ebdc5d062587a7373ad778fe5306fe https://www.encodeproject.org/files/ENCFF194LZR/@@download/ENCFF194LZR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF133XOX bigWig signal p-value ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF430YAL, ENCFF764AHB 653689988 ENCODE Processing Pipeline ea6ed9d189e1206fa745cf50f463eb1f https://www.encodeproject.org/files/ENCFF133XOX/@@download/ENCFF133XOX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF960NZJ bigWig signal p-value ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF372TQJ, ENCFF645ARX 667523828 ENCODE Processing Pipeline df303a4d83980c1e1ee034fba3789a2f https://www.encodeproject.org/files/ENCFF960NZJ/@@download/ENCFF960NZJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF263OSJ bigWig signal p-value ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF645ARX 575320531 ENCODE Processing Pipeline cc7cc7b666ca1fbc228a5e47ebeb6c6b https://www.encodeproject.org/files/ENCFF263OSJ/@@download/ENCFF263OSJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF737CRY bigWig signal p-value ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF764AHB 678310897 ENCODE Processing Pipeline 324e3515ee994d031e6b9a2b0f92f436 https://www.encodeproject.org/files/ENCFF737CRY/@@download/ENCFF737CRY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF132PIH bigWig signal p-value ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF372TQJ 672566194 ENCODE Processing Pipeline 9f7d05126b11e0b6771017ad38e25212 https://www.encodeproject.org/files/ENCFF132PIH/@@download/ENCFF132PIH.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF227WEO bigWig fold change over control ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF430YAL 521453945 ENCODE Processing Pipeline fe54361bc79d799abaedcdfe458b116e https://www.encodeproject.org/files/ENCFF227WEO/@@download/ENCFF227WEO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF448ZKT bigWig fold change over control ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF645ARX 521898733 ENCODE Processing Pipeline 9b7ad45e8d42a684b1685895115de4f7 https://www.encodeproject.org/files/ENCFF448ZKT/@@download/ENCFF448ZKT.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF415NBT bigWig fold change over control ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF764AHB 722018508 ENCODE Processing Pipeline 555c0e66743a4823fd38a74daa5aef41 https://www.encodeproject.org/files/ENCFF415NBT/@@download/ENCFF415NBT.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF604CJA bigWig fold change over control ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF372TQJ 710451027 ENCODE Processing Pipeline b985d340c21537f4504ec96940ebe18f https://www.encodeproject.org/files/ENCFF604CJA/@@download/ENCFF604CJA.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF773DLD bigWig fold change over control ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF430YAL, ENCFF764AHB 1030069819 ENCODE Processing Pipeline 26d84e0bcfd5eacd5598d3848a7fdbe6 https://www.encodeproject.org/files/ENCFF773DLD/@@download/ENCFF773DLD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF690AVX bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF430YAL, ENCFF764AHB 7115382 ENCODE Processing Pipeline 842a64222ba9d1de0c5aa49ad27017bb https://www.encodeproject.org/files/ENCFF690AVX/@@download/ENCFF690AVX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF675QKT bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF764AHB 6724590 ENCODE Processing Pipeline a5ac54afb16c8de00867a78f84c6df2b https://www.encodeproject.org/files/ENCFF675QKT/@@download/ENCFF675QKT.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF335YRO bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF430YAL 6779451 ENCODE Processing Pipeline 37e9c4c7aab88c6b372b5d3b4238137c https://www.encodeproject.org/files/ENCFF335YRO/@@download/ENCFF335YRO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF906KUK bigWig fold change over control ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF372TQJ, ENCFF645ARX 1039776963 ENCODE Processing Pipeline b9e535563192d0e06600cbcadc7f9e4b https://www.encodeproject.org/files/ENCFF906KUK/@@download/ENCFF906KUK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF183BJV bigBed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF675QKT 12867738 ENCODE Processing Pipeline 95baf36622917cb6e5e8a797c4e2b96a https://www.encodeproject.org/files/ENCFF183BJV/@@download/ENCFF183BJV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF180BOV bed narrowPeak conservative idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF335YRO, ENCFF675QKT, ENCFF690AVX 288484 ENCODE Processing Pipeline 0863d2b6ceb2ed9c6a9f39dc9f5aba4e https://www.encodeproject.org/files/ENCFF180BOV/@@download/ENCFF180BOV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF105IPJ bed narrowPeak optimal idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF335YRO, ENCFF675QKT, ENCFF690AVX 518864 ENCODE Processing Pipeline 86f3c87d2786151111b6f561b46fe6ac https://www.encodeproject.org/files/ENCFF105IPJ/@@download/ENCFF105IPJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF082ABW bigBed narrowPeak optimal idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF105IPJ 944992 ENCODE Processing Pipeline 94f4787cd9e05c919ee912a598a8fd0d https://www.encodeproject.org/files/ENCFF082ABW/@@download/ENCFF082ABW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF680OHB bigBed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF335YRO 12628254 ENCODE Processing Pipeline 45b422ddf8a45ad0974e7b10504f171b https://www.encodeproject.org/files/ENCFF680OHB/@@download/ENCFF680OHB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF027SOI bigBed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF690AVX 12636373 ENCODE Processing Pipeline 566302715625794a74630caf9e7dd2f2 https://www.encodeproject.org/files/ENCFF027SOI/@@download/ENCFF027SOI.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF372MNN bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF645ARX 6687057 ENCODE Processing Pipeline 810623664c95795f250f2d726f8d88af https://www.encodeproject.org/files/ENCFF372MNN/@@download/ENCFF372MNN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF976LPR bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF372TQJ, ENCFF645ARX 7166406 ENCODE Processing Pipeline c2fcf178c42d3532535983a8f017e73b https://www.encodeproject.org/files/ENCFF976LPR/@@download/ENCFF976LPR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF468DDV bigBed narrowPeak conservative idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF180BOV 599663 ENCODE Processing Pipeline 21a68648c61025d4f4411a99473146b0 https://www.encodeproject.org/files/ENCFF468DDV/@@download/ENCFF468DDV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF817YCW bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF372TQJ 6746317 ENCODE Processing Pipeline f98b42916dbab5e0843c66c3e859626a https://www.encodeproject.org/files/ENCFF817YCW/@@download/ENCFF817YCW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF285NTC bigBed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF372MNN 12567213 ENCODE Processing Pipeline eaab628da7ed0eb66616237e50c38734 https://www.encodeproject.org/files/ENCFF285NTC/@@download/ENCFF285NTC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF912VGT bigBed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF817YCW 12903568 ENCODE Processing Pipeline ede74913a52803fbe1506a1445ef4f9e https://www.encodeproject.org/files/ENCFF912VGT/@@download/ENCFF912VGT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF805JVD bigBed narrowPeak optimal idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF153ODZ 1173543 ENCODE Processing Pipeline fe3eee43891d70d57dcc460071bb2649 https://www.encodeproject.org/files/ENCFF805JVD/@@download/ENCFF805JVD.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF128LNS bigBed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF976LPR 12698875 ENCODE Processing Pipeline 30044fdf2123ef187be89a3dbc60d1e1 https://www.encodeproject.org/files/ENCFF128LNS/@@download/ENCFF128LNS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF084VQB bed narrowPeak conservative idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF372MNN, ENCFF419RSJ, ENCFF817YCW, ENCFF976LPR 310128 ENCODE Processing Pipeline a8cec7bce28726839285958961040262 https://www.encodeproject.org/files/ENCFF084VQB/@@download/ENCFF084VQB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF383MHU bigBed narrowPeak conservative idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF084VQB 630203 ENCODE Processing Pipeline 673682f901d094807d8684ce6008ad11 https://www.encodeproject.org/files/ENCFF383MHU/@@download/ENCFF383MHU.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF153ODZ bed narrowPeak optimal idr thresholded peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF372MNN, ENCFF419RSJ, ENCFF817YCW, ENCFF976LPR 541725 ENCODE Processing Pipeline 5961753d08e008ff5bcb0b731b226a01 https://www.encodeproject.org/files/ENCFF153ODZ/@@download/ENCFF153ODZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF000YWZ bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 1 584506849 Michael Snyder, Stanford eb7dfd9cfce147b2134efb217e8e235d https://www.encodeproject.org/files/ENCFF000YWZ/@@download/ENCFF000YWZ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YXA bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 1 531186813 Michael Snyder, Stanford c6782813723963b7ea1d0f9eb0375b97 https://www.encodeproject.org/files/ENCFF000YXA/@@download/ENCFF000YXA.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YXB bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VOJ 3868117 Michael Snyder, Stanford 9f6c5e293e4355f456ee1107fd156627 https://www.encodeproject.org/files/ENCFF000YXB/@@download/ENCFF000YXB.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YXC fastq reads ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1027202514 Michael Snyder, Stanford 9f499956da15b0a67cd7a1fff0952797 https://www.encodeproject.org/files/ENCFF000YXC/@@download/ENCFF000YXC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YXE fastq reads ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 975573627 Michael Snyder, Stanford 17c79b35798f2af1d284e5727ec6dbd5 https://www.encodeproject.org/files/ENCFF000YXE/@@download/ENCFF000YXE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YXI bigWig signal ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 390666828 Michael Snyder, Stanford e0adc91e50615ec823d2ebd3055b5a06 https://www.encodeproject.org/files/ENCFF000YXI/@@download/ENCFF000YXI.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VOJ bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1785687 Michael Snyder, Stanford 5f7f919615060c200ba047bece218c5e https://www.encodeproject.org/files/ENCFF001VOJ/@@download/ENCFF001VOJ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CXS bed narrowPeak optimal idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 112983 ENCODE Consortium Analysis Working Group 92403e1ae30fd8ab1f735a7344bbfbd3 https://www.encodeproject.org/files/ENCFF002CXS/@@download/ENCFF002CXS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF213IPM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CXS 333436 ENCODE Consortium c40be9a9eb258cdcc48b2dd429700d51 https://www.encodeproject.org/files/ENCFF213IPM/@@download/ENCFF213IPM.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF582VZH bam unfiltered alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YXC, ENCFF807MUK 1143750879 ENCODE Processing Pipeline fd2d3de8fa26a67313a64440cefe4339 https://www.encodeproject.org/files/ENCFF582VZH/@@download/ENCFF582VZH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF202GPN bam unfiltered alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YXE, ENCFF807MUK 1100612809 ENCODE Processing Pipeline 2d77f408ad4bc6f0fa44c0f0f0636fb4 https://www.encodeproject.org/files/ENCFF202GPN/@@download/ENCFF202GPN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF263ZPM bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YXC, ENCFF807MUK 827464358 ENCODE Processing Pipeline f1141e9454d68f0ceb3255b274f1f2c3 https://www.encodeproject.org/files/ENCFF263ZPM/@@download/ENCFF263ZPM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF207UON bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YXE, ENCFF807MUK 803810930 ENCODE Processing Pipeline a85141cd50167b4d8d8a760fb37cb6f9 https://www.encodeproject.org/files/ENCFF207UON/@@download/ENCFF207UON.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF811ZTI bam unfiltered alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YXE, ENCFF643CGH 1102658797 ENCODE Processing Pipeline 9b28feccf3b5614b8a3edbdca60e3c3b https://www.encodeproject.org/files/ENCFF811ZTI/@@download/ENCFF811ZTI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF495NNH bam unfiltered alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YXC, ENCFF643CGH 1146105927 ENCODE Processing Pipeline 07a4e384a3b31accffdf09de4fe5ad8c https://www.encodeproject.org/files/ENCFF495NNH/@@download/ENCFF495NNH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF630JRN bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YXC, ENCFF643CGH 826249394 ENCODE Processing Pipeline e2639e30b1eb362a20f3b066cf044905 https://www.encodeproject.org/files/ENCFF630JRN/@@download/ENCFF630JRN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF594OID bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YXE, ENCFF643CGH 802739068 ENCODE Processing Pipeline 8d58a4c636690568dcdbac14a2601a77 https://www.encodeproject.org/files/ENCFF594OID/@@download/ENCFF594OID.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388ATO bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF263ZPM, ENCFF710NTS 6963167 ENCODE Processing Pipeline 194e237e1eb582828183e76472f0d467 https://www.encodeproject.org/files/ENCFF388ATO/@@download/ENCFF388ATO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354XDX bigWig fold change over control ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF207UON, ENCFF263ZPM, ENCFF710NTS 600239038 ENCODE Processing Pipeline 1212b84c8f7195d7bf7eaa26eb7463df https://www.encodeproject.org/files/ENCFF354XDX/@@download/ENCFF354XDX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF999VYN bigWig signal p-value ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF263ZPM, ENCFF710NTS 589240279 ENCODE Processing Pipeline 89b15ee4238ad4a7893df0815a97f7e9 https://www.encodeproject.org/files/ENCFF999VYN/@@download/ENCFF999VYN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF987CNI bigWig fold change over control ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF263ZPM, ENCFF710NTS 332868877 ENCODE Processing Pipeline cb3165d0a146562ccc04043a276a29f8 https://www.encodeproject.org/files/ENCFF987CNI/@@download/ENCFF987CNI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF070WZH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF712GHT 348103 ENCODE Processing Pipeline 038253f52fd2365b504b58d6ba2630d2 https://www.encodeproject.org/files/ENCFF070WZH/@@download/ENCFF070WZH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF104IBO bigWig signal p-value ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF207UON, ENCFF710NTS 483875216 ENCODE Processing Pipeline 6eba5846db5e2cd1e7dce1d41c9ae333 https://www.encodeproject.org/files/ENCFF104IBO/@@download/ENCFF104IBO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF470KPQ bigWig signal p-value ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF207UON, ENCFF263ZPM, ENCFF710NTS 550285778 ENCODE Processing Pipeline 297f4abe8f8c42be6c96e77b5883d722 https://www.encodeproject.org/files/ENCFF470KPQ/@@download/ENCFF470KPQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF528AUR bigWig fold change over control ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF207UON, ENCFF710NTS 322149183 ENCODE Processing Pipeline f732dc1c28efe2b62d2f4557a7ce26ad https://www.encodeproject.org/files/ENCFF528AUR/@@download/ENCFF528AUR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932UHC bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF207UON, ENCFF710NTS 7095210 ENCODE Processing Pipeline df87abde436c4eb20e311cfa808f3398 https://www.encodeproject.org/files/ENCFF932UHC/@@download/ENCFF932UHC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039RTS bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF207UON, ENCFF263ZPM, ENCFF710NTS 7125640 ENCODE Processing Pipeline 5f5453e828ea7d250f70357dc366c9ea https://www.encodeproject.org/files/ENCFF039RTS/@@download/ENCFF039RTS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF174BGI bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF388ATO 11623565 ENCODE Processing Pipeline b71f9f4ddd3c5366c5fbf8d50dbec850 https://www.encodeproject.org/files/ENCFF174BGI/@@download/ENCFF174BGI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354EJC bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF932UHC 11411943 ENCODE Processing Pipeline 8f7f2f7ec23f445c2c20916202e4e823 https://www.encodeproject.org/files/ENCFF354EJC/@@download/ENCFF354EJC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF559IGQ bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF039RTS 11517407 ENCODE Processing Pipeline 837d50ab2f4d818e490a48f6ae0b6283 https://www.encodeproject.org/files/ENCFF559IGQ/@@download/ENCFF559IGQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296CNQ bed narrowPeak optimal idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF039RTS, ENCFF388ATO, ENCFF932UHC 185689 ENCODE Processing Pipeline 96912e3d9f88029951abcd019f3a5721 https://www.encodeproject.org/files/ENCFF296CNQ/@@download/ENCFF296CNQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF056KRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296CNQ 452297 ENCODE Processing Pipeline 9666bff06001db02757785939d62fcab https://www.encodeproject.org/files/ENCFF056KRR/@@download/ENCFF056KRR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF712GHT bed narrowPeak conservative idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF039RTS, ENCFF388ATO, ENCFF932UHC 132287 ENCODE Processing Pipeline c12b463ec2517a3d4ea9717b040c4e3c https://www.encodeproject.org/files/ENCFF712GHT/@@download/ENCFF712GHT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF554KVR bigWig signal p-value ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF630JRN 499283423 ENCODE Processing Pipeline 29474a1034452ee26fc32f2636de4807 https://www.encodeproject.org/files/ENCFF554KVR/@@download/ENCFF554KVR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF171FGN bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF222KTC 11635066 ENCODE Processing Pipeline e0d8b01edf7f3275dcf1d0ec567743fc https://www.encodeproject.org/files/ENCFF171FGN/@@download/ENCFF171FGN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF706RRL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF266OPF 477195 ENCODE Processing Pipeline c8b4966c30e29ff52ed65517521cea62 https://www.encodeproject.org/files/ENCFF706RRL/@@download/ENCFF706RRL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF881EJC bigWig fold change over control ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF594OID, ENCFF630JRN 556254311 ENCODE Processing Pipeline beae52668fee0eb56e668083f281abb1 https://www.encodeproject.org/files/ENCFF881EJC/@@download/ENCFF881EJC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF568KQU bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF137UHI 11415477 ENCODE Processing Pipeline 4b25593f2f87345e568068183e435fd8 https://www.encodeproject.org/files/ENCFF568KQU/@@download/ENCFF568KQU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF254IOJ bigBed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF446MMZ 11553472 ENCODE Processing Pipeline 7295b0c9a1f986c7cbbc4cf48a171462 https://www.encodeproject.org/files/ENCFF254IOJ/@@download/ENCFF254IOJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF027TJN bed narrowPeak conservative idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF137UHI, ENCFF222KTC, ENCFF419RSJ, ENCFF446MMZ 129023 ENCODE Processing Pipeline b4c9dbc4a4e524a0aac441b41a352c37 https://www.encodeproject.org/files/ENCFF027TJN/@@download/ENCFF027TJN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF826PQU bigWig signal p-value ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF594OID, ENCFF630JRN 537956277 ENCODE Processing Pipeline 82f9f93710aeb2f1485581b529dd3991 https://www.encodeproject.org/files/ENCFF826PQU/@@download/ENCFF826PQU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF973ZSN bigWig fold change over control ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF630JRN 335838109 ENCODE Processing Pipeline db2f530cc185578e177307b3c9bcacd4 https://www.encodeproject.org/files/ENCFF973ZSN/@@download/ENCFF973ZSN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF222KTC bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF630JRN 6957946 ENCODE Processing Pipeline dab330a66dafea71c26fa7a9169b6f25 https://www.encodeproject.org/files/ENCFF222KTC/@@download/ENCFF222KTC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF446MMZ bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF594OID, ENCFF630JRN 7123586 ENCODE Processing Pipeline 99818a4135c8d018548f641d18a19614 https://www.encodeproject.org/files/ENCFF446MMZ/@@download/ENCFF446MMZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF061FOD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF027TJN 344649 ENCODE Processing Pipeline 9ecf339b0b65f7aa875bd8d3815148bc https://www.encodeproject.org/files/ENCFF061FOD/@@download/ENCFF061FOD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF410MHS bigWig fold change over control ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF594OID 327822863 ENCODE Processing Pipeline 6661f0741d7615dfaac30d4bc7d89f4e https://www.encodeproject.org/files/ENCFF410MHS/@@download/ENCFF410MHS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF137UHI bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF594OID 7095140 ENCODE Processing Pipeline 051bb94191798cdef61c59e8c3e09a1c https://www.encodeproject.org/files/ENCFF137UHI/@@download/ENCFF137UHI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF266OPF bed narrowPeak optimal idr thresholded peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF137UHI, ENCFF222KTC, ENCFF419RSJ, ENCFF446MMZ 199055 ENCODE Processing Pipeline a30020977d8528dcc6f60d2d4c5abef4 https://www.encodeproject.org/files/ENCFF266OPF/@@download/ENCFF266OPF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF310GHE bigWig signal p-value ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF594OID 477892415 ENCODE Processing Pipeline c94357b3122692d20cedc6065f01f25d https://www.encodeproject.org/files/ENCFF310GHE/@@download/ENCFF310GHE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZFZ bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPS 7582973 Kevin Struhl, HMS ccedebf1c37172e441e66b64268008ff https://www.encodeproject.org/files/ENCFF000ZFZ/@@download/ENCFF000ZFZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF000ZGA fastq reads ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1160403445 Kevin Struhl, HMS aa040a4b7b670b14241daa73109c1666 https://www.encodeproject.org/files/ENCFF000ZGA/@@download/ENCFF000ZGA.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF000ZGC fastq reads ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1232309413 Kevin Struhl, HMS b0c120124a64ec334a762a93abf385e3 https://www.encodeproject.org/files/ENCFF000ZGC/@@download/ENCFF000ZGC.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF000ZGE bigWig signal ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 430915726 Kevin Struhl, HMS c336e2e3c793eef201a87bc974086ed0 https://www.encodeproject.org/files/ENCFF000ZGE/@@download/ENCFF000ZGE.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review, missing derived_from ENCFF000ZGF bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 1 622022900 Kevin Struhl, HMS 385818e70a0ac212aa6c03f5496287f3 https://www.encodeproject.org/files/ENCFF000ZGF/@@download/ENCFF000ZGF.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review, missing derived_from ENCFF000ZGG bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 1 670976502 Kevin Struhl, HMS 8db7dea07ea57dff52118a4a8af11bda https://www.encodeproject.org/files/ENCFF000ZGG/@@download/ENCFF000ZGG.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from, duplicate lane review ENCFF001VPS bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 3069344 Kevin Struhl, HMS 2fa64ee2de793e51fe58bb3d9c1b0dd5 https://www.encodeproject.org/files/ENCFF001VPS/@@download/ENCFF001VPS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization missing derived_from, biological replicates with identical biosample, duplicate lane review ENCFF002CYW bed narrowPeak optimal idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1772744 ENCODE Consortium Analysis Working Group f97dcb21fe0f2a4472eb1ab11b495967 https://www.encodeproject.org/files/ENCFF002CYW/@@download/ENCFF002CYW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from, duplicate lane review ENCFF463DXC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYW 3425602 ENCODE Consortium 1dfc5f2a4d5ab321fde81fbe1a8cd705 https://www.encodeproject.org/files/ENCFF463DXC/@@download/ENCFF463DXC.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF113LOR bam unfiltered alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGA, ENCFF643CGH 1229226011 ENCODE Processing Pipeline 25c2b973264f5efbcbc2b2cc117a1556 https://www.encodeproject.org/files/ENCFF113LOR/@@download/ENCFF113LOR.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF767TQD bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGA, ENCFF643CGH 836087212 ENCODE Processing Pipeline 3e00fd4f121a483149900cbc2ff9108d https://www.encodeproject.org/files/ENCFF767TQD/@@download/ENCFF767TQD.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF993UTJ bam unfiltered alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGC, ENCFF643CGH 1318387906 ENCODE Processing Pipeline b140bccb7de5fbb2ddd541e0a6ae7708 https://www.encodeproject.org/files/ENCFF993UTJ/@@download/ENCFF993UTJ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF761HTF bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGC, ENCFF643CGH 902648089 ENCODE Processing Pipeline 60d7381874066ee31afb9a29eb4e7072 https://www.encodeproject.org/files/ENCFF761HTF/@@download/ENCFF761HTF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF961YZJ bam unfiltered alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGA, ENCFF807MUK 1226112825 ENCODE Processing Pipeline e4c9138c0493eccb07e601f103e65270 https://www.encodeproject.org/files/ENCFF961YZJ/@@download/ENCFF961YZJ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF988KVD bam unfiltered alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGC, ENCFF807MUK 1314967341 ENCODE Processing Pipeline 06f9c8e19feed071c1ae925d00522b85 https://www.encodeproject.org/files/ENCFF988KVD/@@download/ENCFF988KVD.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF532FFM bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGC, ENCFF807MUK 902934250 ENCODE Processing Pipeline cfd09cc1e9a197d4b9c3536af32a377e https://www.encodeproject.org/files/ENCFF532FFM/@@download/ENCFF532FFM.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF028RMR bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGA, ENCFF807MUK 836342428 ENCODE Processing Pipeline ae393dfcbdfadc60c3191659d00436d8 https://www.encodeproject.org/files/ENCFF028RMR/@@download/ENCFF028RMR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF034ZHB bigWig fold change over control ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF252KTP, ENCFF767TQD 826421819 ENCODE Processing Pipeline 9c7213004c18b18ff65a63da4f5b339e https://www.encodeproject.org/files/ENCFF034ZHB/@@download/ENCFF034ZHB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF883AKI bigWig fold change over control ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF252KTP, ENCFF761HTF 965928285 ENCODE Processing Pipeline 8c4c3a1b483d1345fa4f2bb02343c174 https://www.encodeproject.org/files/ENCFF883AKI/@@download/ENCFF883AKI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF054SFS bigWig signal p-value ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF252KTP, ENCFF761HTF, ENCFF767TQD 1597429729 ENCODE Processing Pipeline 1c47dfa93cafa949a7acbfef609944e3 https://www.encodeproject.org/files/ENCFF054SFS/@@download/ENCFF054SFS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF612VRO bigWig signal p-value ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF252KTP, ENCFF761HTF 1543935016 ENCODE Processing Pipeline f6c10fa83af8b4a88b85e963c9a45ed6 https://www.encodeproject.org/files/ENCFF612VRO/@@download/ENCFF612VRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF287LMT bigWig signal p-value ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF252KTP, ENCFF767TQD 1389523754 ENCODE Processing Pipeline aeea5adfa67c5ce358a7faa518b94619 https://www.encodeproject.org/files/ENCFF287LMT/@@download/ENCFF287LMT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF047ZQF bigWig fold change over control ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF252KTP, ENCFF761HTF, ENCFF767TQD 1425783411 ENCODE Processing Pipeline a6b98192ac93c62da8505e7783c1a0cf https://www.encodeproject.org/files/ENCFF047ZQF/@@download/ENCFF047ZQF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF223QDN bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF252KTP, ENCFF767TQD 5762007 ENCODE Processing Pipeline 6832065906eb31cc6468e5c59b9016f0 https://www.encodeproject.org/files/ENCFF223QDN/@@download/ENCFF223QDN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF252QFY bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184BSU 11513910 ENCODE Processing Pipeline f6effe396999b48474238f16d0b875ec https://www.encodeproject.org/files/ENCFF252QFY/@@download/ENCFF252QFY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF050IYE bed narrowPeak conservative idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184BSU, ENCFF223QDN, ENCFF419RSJ, ENCFF723ECG 1558832 ENCODE Processing Pipeline 5f4ad421bae0d1a87e53fff64a0b70a3 https://www.encodeproject.org/files/ENCFF050IYE/@@download/ENCFF050IYE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF416LEK bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF050IYE 2409045 ENCODE Processing Pipeline 6c63c65befadfc6e90b6af6c98cbf610 https://www.encodeproject.org/files/ENCFF416LEK/@@download/ENCFF416LEK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF723ECG bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF252KTP, ENCFF761HTF 5866818 ENCODE Processing Pipeline 21de604d17e07cd9d121fa53c14ee615 https://www.encodeproject.org/files/ENCFF723ECG/@@download/ENCFF723ECG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF184BSU bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF252KTP, ENCFF761HTF, ENCFF767TQD 6422598 ENCODE Processing Pipeline 929c9ce660fbffd2ea7fdd65591020cf https://www.encodeproject.org/files/ENCFF184BSU/@@download/ENCFF184BSU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF353OBA bed narrowPeak optimal idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184BSU, ENCFF223QDN, ENCFF419RSJ, ENCFF723ECG 1592850 ENCODE Processing Pipeline 211087b27b5d55eec6af33819ec0ca04 https://www.encodeproject.org/files/ENCFF353OBA/@@download/ENCFF353OBA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF019WXQ bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF223QDN 11045012 ENCODE Processing Pipeline 2ceb7e2bc7408ff0a95b0e8137208911 https://www.encodeproject.org/files/ENCFF019WXQ/@@download/ENCFF019WXQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF835DMO bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF723ECG 11132152 ENCODE Processing Pipeline 7bc3bb530953e1f19ffdd760a6bcb781 https://www.encodeproject.org/files/ENCFF835DMO/@@download/ENCFF835DMO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF469ZNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF353OBA 2448363 ENCODE Processing Pipeline 339f871b13d6098356aa536a57a48413 https://www.encodeproject.org/files/ENCFF469ZNJ/@@download/ENCFF469ZNJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF162FTL bigWig signal p-value ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF028RMR, ENCFF425RUE 1340697350 ENCODE Processing Pipeline 206ba719784c5a33a3b4744bbec6e0b4 https://www.encodeproject.org/files/ENCFF162FTL/@@download/ENCFF162FTL.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF747GYF bigWig fold change over control ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF028RMR, ENCFF425RUE 839826057 ENCODE Processing Pipeline 3eaf5bfcef5f119ee177119055122b7f https://www.encodeproject.org/files/ENCFF747GYF/@@download/ENCFF747GYF.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF482RYH bigWig signal p-value ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF532FFM 1447475313 ENCODE Processing Pipeline 8857b146b7d29680f39454d8b9bf4b96 https://www.encodeproject.org/files/ENCFF482RYH/@@download/ENCFF482RYH.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF620ZDD bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF245IKC 11196302 ENCODE Processing Pipeline b2527e8fe756468d5c78e5ca98834a22 https://www.encodeproject.org/files/ENCFF620ZDD/@@download/ENCFF620ZDD.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF149HIX bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF364ZNH 11389232 ENCODE Processing Pipeline 0a7a185c59be0c9131d2fb7b1e0d1df1 https://www.encodeproject.org/files/ENCFF149HIX/@@download/ENCFF149HIX.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF111IPG bed narrowPeak optimal idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF177VFU, ENCFF245IKC, ENCFF364ZNH 1625733 ENCODE Processing Pipeline 46234c121cddbc9360b1cf51d8a0bc48 https://www.encodeproject.org/files/ENCFF111IPG/@@download/ENCFF111IPG.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF701TXK bigWig signal p-value ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF028RMR, ENCFF425RUE, ENCFF532FFM 1618412771 ENCODE Processing Pipeline 968c09040c5eceedabafe1c8ccb3904a https://www.encodeproject.org/files/ENCFF701TXK/@@download/ENCFF701TXK.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF364ZNH bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF532FFM 6055180 ENCODE Processing Pipeline ce2481f4145bcc55f98f59538fd69b39 https://www.encodeproject.org/files/ENCFF364ZNH/@@download/ENCFF364ZNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF428RLZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF876MFP 2466966 ENCODE Processing Pipeline 28a3610caeb3d05939a6fe61c545c334 https://www.encodeproject.org/files/ENCFF428RLZ/@@download/ENCFF428RLZ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF489GIM bigWig fold change over control ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF532FFM 948937879 ENCODE Processing Pipeline 27388fbbe82e6739ae10d317be6cf4f9 https://www.encodeproject.org/files/ENCFF489GIM/@@download/ENCFF489GIM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF245IKC bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF028RMR, ENCFF425RUE 5868487 ENCODE Processing Pipeline 8052012c41491919ea968fdd32b5b5c7 https://www.encodeproject.org/files/ENCFF245IKC/@@download/ENCFF245IKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF141ULR bigBed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF177VFU 11785338 ENCODE Processing Pipeline 25305cf2895b17e578850d20ccf69aa2 https://www.encodeproject.org/files/ENCFF141ULR/@@download/ENCFF141ULR.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF876MFP bed narrowPeak conservative idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF177VFU, ENCFF245IKC, ENCFF364ZNH 1584565 ENCODE Processing Pipeline f1191078a55b6f8782f95cf01ffa0737 https://www.encodeproject.org/files/ENCFF876MFP/@@download/ENCFF876MFP.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF764HIZ bigWig fold change over control ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF028RMR, ENCFF425RUE, ENCFF532FFM 1426510506 ENCODE Processing Pipeline 665ea68dadf940f58e08b3ccc7467200 https://www.encodeproject.org/files/ENCFF764HIZ/@@download/ENCFF764HIZ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF177VFU bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF028RMR, ENCFF425RUE, ENCFF532FFM 6629481 ENCODE Processing Pipeline 8a84594b4499888124f902446f37c80d https://www.encodeproject.org/files/ENCFF177VFU/@@download/ENCFF177VFU.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF048OJE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF111IPG 2518854 ENCODE Processing Pipeline 80543513d5a8b18fd996ce00b4f0c38e https://www.encodeproject.org/files/ENCFF048OJE/@@download/ENCFF048OJE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF000YOQ fastq reads ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 947957409 Kevin Struhl, HMS 24018da97247bbfcb0e9de6653ed86a8 https://www.encodeproject.org/files/ENCFF000YOQ/@@download/ENCFF000YOQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released low read length, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YOJ bam alignments ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOP 150930955 Kevin Struhl, HMS b1892cb5230a491fa6498272e823f9d2 https://www.encodeproject.org/files/ENCFF000YOJ/@@download/ENCFF000YOJ.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YOK bam alignments ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOQ 367422796 Kevin Struhl, HMS 5a3eaeb8574bd6f54e63a5bf1cfc9299 https://www.encodeproject.org/files/ENCFF000YOK/@@download/ENCFF000YOK.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YOL bigBed narrowPeak peaks ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNI 1809908 Kevin Struhl, HMS c928d505bc3d8babde44696e0519020a https://www.encodeproject.org/files/ENCFF000YOL/@@download/ENCFF000YOL.bigBed hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YON bigWig signal ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 337207166 Kevin Struhl, HMS 90f7d451b048a304c0fc140992ef6134 https://www.encodeproject.org/files/ENCFF000YON/@@download/ENCFF000YON.bigWig hg19 released low read length, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YOP fastq reads ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 299376056 Kevin Struhl, HMS 842dcb8e4d8783a2b5aa1352f2aeb971 https://www.encodeproject.org/files/ENCFF000YOP/@@download/ENCFF000YOP.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF001VNI bed narrowPeak peaks ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 709237 Kevin Struhl, HMS fca4dfee5f42fcc3e629200d9523a39c https://www.encodeproject.org/files/ENCFF001VNI/@@download/ENCFF001VNI.bed.gz hg19 released low read length, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CWT bed narrowPeak optimal idr thresholded peaks ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 320736 ENCODE Consortium Analysis Working Group 9784935821cde1c75e773aba4c415e7d https://www.encodeproject.org/files/ENCFF002CWT/@@download/ENCFF002CWT.bed.gz hg19 released low read length, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF510MIH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWT 753606 ENCODE Consortium 316793c477b503f4193e386796557aaa https://www.encodeproject.org/files/ENCFF510MIH/@@download/ENCFF510MIH.bigBed hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000RRL bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RRR 515007396 Vishwanath Iyer, UTA a50fd7fa5ff7c9bd4e94a5cf5651ac98 https://www.encodeproject.org/files/ENCFF000RRL/@@download/ENCFF000RRL.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RRM bigWig base overlap signal ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1016549911 Vishwanath Iyer, UTA 759014cf5f0ca2e70edfd42264677a89 https://www.encodeproject.org/files/ENCFF000RRM/@@download/ENCFF000RRM.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000RRO bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RRS 503075162 Vishwanath Iyer, UTA 5bfcb2932d1e88a1ec0b4fc20448f0c0 https://www.encodeproject.org/files/ENCFF000RRO/@@download/ENCFF000RRO.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RRP bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001USQ 2176048 Vishwanath Iyer, UTA c6c32a0d07562c44d18d23873feab640 https://www.encodeproject.org/files/ENCFF000RRP/@@download/ENCFF000RRP.bigBed hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RRQ bigWig signal ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 4248734295 Vishwanath Iyer, UTA e1aed1565942b2f5eed433656d6a2829 https://www.encodeproject.org/files/ENCFF000RRQ/@@download/ENCFF000RRQ.bigWig hg19 released control low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RRR fastq reads ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 496686677 Vishwanath Iyer, UTA b66ddc281fc8913fec16f228c3721679 https://www.encodeproject.org/files/ENCFF000RRR/@@download/ENCFF000RRR.fastq.gz Illumina Genome Analyzer /files/ENCFF000RTH/ released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RRS fastq reads ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 568290422 Vishwanath Iyer, UTA f665d08a43cacb085c4c34a0dec50d3b https://www.encodeproject.org/files/ENCFF000RRS/@@download/ENCFF000RRS.fastq.gz Illumina Genome Analyzer /files/ENCFF000RTH/ released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001USQ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1237271 Vishwanath Iyer, UTA 77b2e33066eabb4c798a3872b8a72c11 https://www.encodeproject.org/files/ENCFF001USQ/@@download/ENCFF001USQ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF822LAZ bam unfiltered alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RRR, ENCFF643CGH 591431121 ENCODE Processing Pipeline 672fb9d79fe134e33a1cc18a4ee93db0 https://www.encodeproject.org/files/ENCFF822LAZ/@@download/ENCFF822LAZ.bam GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF903YUY bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RRS, ENCFF643CGH 364319073 ENCODE Processing Pipeline d577eb3012f8e591a4df832a7e8f4091 https://www.encodeproject.org/files/ENCFF903YUY/@@download/ENCFF903YUY.bam GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF875VWC bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RRR, ENCFF643CGH 389620607 ENCODE Processing Pipeline df5f17eb78fb9e3d7f5271a494a936bf https://www.encodeproject.org/files/ENCFF875VWC/@@download/ENCFF875VWC.bam GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF281FKY bam unfiltered alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RRS, ENCFF643CGH 660461466 ENCODE Processing Pipeline 43d6efcc0d06cf6c8221fd2341bcf990 https://www.encodeproject.org/files/ENCFF281FKY/@@download/ENCFF281FKY.bam GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF038ZZK bam unfiltered alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RRR, ENCFF807MUK 589381124 ENCODE Processing Pipeline 632444275a4e4a4df4f45be1f14a18c5 https://www.encodeproject.org/files/ENCFF038ZZK/@@download/ENCFF038ZZK.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF583JRS bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RRR, ENCFF807MUK 389605804 ENCODE Processing Pipeline ecc97c46676a4900c3f6b8f15e1bdd41 https://www.encodeproject.org/files/ENCFF583JRS/@@download/ENCFF583JRS.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF761OTL bigWig signal p-value ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF875VWC 256628151 ENCODE Processing Pipeline 90fd0e7553b767bde495d5a73aa2bc31 https://www.encodeproject.org/files/ENCFF761OTL/@@download/ENCFF761OTL.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF207TWP bigWig fold change over control ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF875VWC 108237917 ENCODE Processing Pipeline 3f020cfc1d61b6b0c2497aaa107542a5 https://www.encodeproject.org/files/ENCFF207TWP/@@download/ENCFF207TWP.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF510YPR bigWig signal p-value ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF903YUY 220765987 ENCODE Processing Pipeline 6654c0721edd5d2b8b960ab32372df0a https://www.encodeproject.org/files/ENCFF510YPR/@@download/ENCFF510YPR.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF251SEQ bigWig fold change over control ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF875VWC, ENCFF903YUY 215139283 ENCODE Processing Pipeline f5da0e4b5d703e6380efff90090e8ff8 https://www.encodeproject.org/files/ENCFF251SEQ/@@download/ENCFF251SEQ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF965VPN bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RRS, ENCFF807MUK 364324248 ENCODE Processing Pipeline 7c7b4ea5b24153d071c8519eb4a3cecc https://www.encodeproject.org/files/ENCFF965VPN/@@download/ENCFF965VPN.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF772DET bigWig fold change over control ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF903YUY 121179687 ENCODE Processing Pipeline f35fe267859462cea43b72ded4eca75a https://www.encodeproject.org/files/ENCFF772DET/@@download/ENCFF772DET.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF629UEC bigWig signal p-value ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF875VWC, ENCFF903YUY 278273699 ENCODE Processing Pipeline 6f1750e6e896b5316c658c9a555576ff https://www.encodeproject.org/files/ENCFF629UEC/@@download/ENCFF629UEC.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF849CHW bam unfiltered alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RRS, ENCFF807MUK 658254169 ENCODE Processing Pipeline ab6f5ff5469e3597bae80f9cacb987ea https://www.encodeproject.org/files/ENCFF849CHW/@@download/ENCFF849CHW.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF228DGU bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF093ETZ 7103945 ENCODE Processing Pipeline bd37f668f1593ccc0612353dbb5a65b1 https://www.encodeproject.org/files/ENCFF228DGU/@@download/ENCFF228DGU.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF735LPR bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF493EUG 7338626 ENCODE Processing Pipeline 7af8fdefe8451d6613da1b47a1b86393 https://www.encodeproject.org/files/ENCFF735LPR/@@download/ENCFF735LPR.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF755EMU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF479GJB 630079 ENCODE Processing Pipeline a45e2e7c616c9f3f8cc914c8e8fd9dfc https://www.encodeproject.org/files/ENCFF755EMU/@@download/ENCFF755EMU.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF131ZPD bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF875VWC 3227495 ENCODE Processing Pipeline 1e9fd859c4e31fc5c44e9c4fae29a33d https://www.encodeproject.org/files/ENCFF131ZPD/@@download/ENCFF131ZPD.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF479GJB bed narrowPeak conservative idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF093ETZ, ENCFF131ZPD, ENCFF419RSJ, ENCFF493EUG 388452 ENCODE Processing Pipeline 71b6d34c5fc4269518ab35159c332110 https://www.encodeproject.org/files/ENCFF479GJB/@@download/ENCFF479GJB.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF493EUG bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF903YUY 3525235 ENCODE Processing Pipeline 7816ba9b55bf654e82bee1da79fcbde1 https://www.encodeproject.org/files/ENCFF493EUG/@@download/ENCFF493EUG.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF093ETZ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF875VWC, ENCFF903YUY 3578266 ENCODE Processing Pipeline 43795ae8cdba11fa9566104ce7be46e2 https://www.encodeproject.org/files/ENCFF093ETZ/@@download/ENCFF093ETZ.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF213AJB bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF131ZPD 6905039 ENCODE Processing Pipeline 97bfe9dcfe9c19621127134c2c703c0e https://www.encodeproject.org/files/ENCFF213AJB/@@download/ENCFF213AJB.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF419PTP bed narrowPeak optimal idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF093ETZ, ENCFF131ZPD, ENCFF419RSJ, ENCFF493EUG 451588 ENCODE Processing Pipeline 442c64038f2335181ba2a1b90aae03fc https://www.encodeproject.org/files/ENCFF419PTP/@@download/ENCFF419PTP.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF218HKS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419PTP 722456 ENCODE Processing Pipeline 2808e56693b81fd23feb85e0b675658e https://www.encodeproject.org/files/ENCFF218HKS/@@download/ENCFF218HKS.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF321LBV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF244DQW 698382 ENCODE Processing Pipeline 0d508f5b1b200b86f0a1c6bb8e625e38 https://www.encodeproject.org/files/ENCFF321LBV/@@download/ENCFF321LBV.bigBed hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF909DSB bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF128FLJ 5516061 ENCODE Processing Pipeline fa29f081ad86b5f04ba391d6e6842027 https://www.encodeproject.org/files/ENCFF909DSB/@@download/ENCFF909DSB.bigBed hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF118PQS bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF192ODH 7047730 ENCODE Processing Pipeline 91718ea356d67c777be642f123703489 https://www.encodeproject.org/files/ENCFF118PQS/@@download/ENCFF118PQS.bigBed hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF244DQW bed narrowPeak optimal idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF128FLJ, ENCFF192ODH, ENCFF780CML 438676 ENCODE Processing Pipeline 0c21dfd74bd1ff0c763735b180ac1d59 https://www.encodeproject.org/files/ENCFF244DQW/@@download/ENCFF244DQW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF730HPH bigWig signal p-value ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF314ZWW, ENCFF965VPN 265550307 ENCODE Processing Pipeline 3330081fb9f2402820b25983d5a1a832 https://www.encodeproject.org/files/ENCFF730HPH/@@download/ENCFF730HPH.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF485YYF bigWig fold change over control ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF314ZWW, ENCFF583JRS, ENCFF965VPN 215110107 ENCODE Processing Pipeline f06fc36d64379251abffac5c8c9d427d https://www.encodeproject.org/files/ENCFF485YYF/@@download/ENCFF485YYF.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF939OHN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF469IRQ 605215 ENCODE Processing Pipeline 08c431490b90fbe014b7155bedf3e00c https://www.encodeproject.org/files/ENCFF939OHN/@@download/ENCFF939OHN.bigBed hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF780CML bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF314ZWW, ENCFF965VPN 3514368 ENCODE Processing Pipeline 3cd259133842ffbef6039da97281c1c6 https://www.encodeproject.org/files/ENCFF780CML/@@download/ENCFF780CML.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF679YGG bigWig fold change over control ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF314ZWW, ENCFF583JRS 109434354 ENCODE Processing Pipeline f00f8a5bf0f811af47395045db2c250d https://www.encodeproject.org/files/ENCFF679YGG/@@download/ENCFF679YGG.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF192ODH bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF314ZWW, ENCFF583JRS, ENCFF965VPN 3542837 ENCODE Processing Pipeline 6185c1750a46c9f00a7f1185ae970f5c https://www.encodeproject.org/files/ENCFF192ODH/@@download/ENCFF192ODH.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF469IRQ bed narrowPeak conservative idr thresholded peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF128FLJ, ENCFF192ODH, ENCFF780CML 375569 ENCODE Processing Pipeline 523606adaec751c03dfbde0e633fb8b4 https://www.encodeproject.org/files/ENCFF469IRQ/@@download/ENCFF469IRQ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF318QGQ bigWig signal p-value ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF314ZWW, ENCFF583JRS 222458920 ENCODE Processing Pipeline ba68386c1fb1f1a2543c6b9e8cbfee1e https://www.encodeproject.org/files/ENCFF318QGQ/@@download/ENCFF318QGQ.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF464VTH bigWig signal p-value ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF314ZWW, ENCFF583JRS, ENCFF965VPN 275326701 ENCODE Processing Pipeline 759ce1e7639fc21d194fbe5dc65288fc https://www.encodeproject.org/files/ENCFF464VTH/@@download/ENCFF464VTH.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF139XNM bigWig fold change over control ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF314ZWW, ENCFF965VPN 120956469 ENCODE Processing Pipeline 8d37fa340c69d22a2d4c320a4d69dea3 https://www.encodeproject.org/files/ENCFF139XNM/@@download/ENCFF139XNM.bigWig hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF128FLJ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF314ZWW, ENCFF583JRS 3202670 ENCODE Processing Pipeline 6b23ef5f49d5867875852f50eb8c9c2c https://www.encodeproject.org/files/ENCFF128FLJ/@@download/ENCFF128FLJ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF965NPH bigBed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF780CML 7313184 ENCODE Processing Pipeline 423cb881eefff1b214c5c344c04d30d1 https://www.encodeproject.org/files/ENCFF965NPH/@@download/ENCFF965NPH.bigBed hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000SAG bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SAO 1186430919 Vishwanath Iyer, UTA 6ac34e5ef7a3aa98b3334203cad14d5b https://www.encodeproject.org/files/ENCFF000SAG/@@download/ENCFF000SAG.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000SAH bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SAP 1250025953 Vishwanath Iyer, UTA e2fab780aaf4bee24f03352db1c37307 https://www.encodeproject.org/files/ENCFF000SAH/@@download/ENCFF000SAH.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000SAI bigWig base overlap signal ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1220748375 Vishwanath Iyer, UTA 52dc339b43faa0c9fa9606a2701c9037 https://www.encodeproject.org/files/ENCFF000SAI/@@download/ENCFF000SAI.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000SAJ bigBed narrowPeak peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTR 1913948 Vishwanath Iyer, UTA b15e37889dd2109da16c80e85dbb0512 https://www.encodeproject.org/files/ENCFF000SAJ/@@download/ENCFF000SAJ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000SAM bigWig signal ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3239093046 Vishwanath Iyer, UTA 4666feef48ddda62f8822fc93386d5a6 https://www.encodeproject.org/files/ENCFF000SAM/@@download/ENCFF000SAM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000SAO fastq reads ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1207955053 Vishwanath Iyer, UTA 5857428be9cf64b70d288afd06dcb89c https://www.encodeproject.org/files/ENCFF000SAO/@@download/ENCFF000SAO.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000SAP fastq reads ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1275191385 Vishwanath Iyer, UTA a1b059d72b2b30191ee1028c8d3abbda https://www.encodeproject.org/files/ENCFF000SAP/@@download/ENCFF000SAP.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001UTR bed narrowPeak peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1201586 Vishwanath Iyer, UTA 44b518e1404ae5f3b5ab8c9aeafaca71 https://www.encodeproject.org/files/ENCFF001UTR/@@download/ENCFF001UTR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002DBL bed narrowPeak optimal idr thresholded peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1161292 ENCODE Consortium Analysis Working Group ea48635d4b9f9f1045e967c2f5e54d78 https://www.encodeproject.org/files/ENCFF002DBL/@@download/ENCFF002DBL.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF410WFV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBL 2366487 ENCODE Consortium c612cca4c032cf4ebcb5e04e8b40938d https://www.encodeproject.org/files/ENCFF410WFV/@@download/ENCFF410WFV.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF690JBH bam unfiltered alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAO, ENCFF807MUK 1549147229 ENCODE Processing Pipeline 7b5618b6fa1aea11c3ad65669a5e0cb3 https://www.encodeproject.org/files/ENCFF690JBH/@@download/ENCFF690JBH.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF564EWR bam unfiltered alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAP, ENCFF807MUK 1570193330 ENCODE Processing Pipeline 96207c2ad3b9c26b7b8029dc06cdc03b https://www.encodeproject.org/files/ENCFF564EWR/@@download/ENCFF564EWR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF742YXT bam unfiltered alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAP, ENCFF643CGH 1571487547 ENCODE Processing Pipeline afc9010bd726de277c3d1e3dfdeb2bf6 https://www.encodeproject.org/files/ENCFF742YXT/@@download/ENCFF742YXT.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF351CVI bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAP, ENCFF643CGH 815923509 ENCODE Processing Pipeline 4aa5358694f0369fe31ff908076663c5 https://www.encodeproject.org/files/ENCFF351CVI/@@download/ENCFF351CVI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF313OIM bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAO, ENCFF643CGH 837358493 ENCODE Processing Pipeline b1972e0980c1f365bff8d3ada9d14e05 https://www.encodeproject.org/files/ENCFF313OIM/@@download/ENCFF313OIM.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF204CZS bam unfiltered alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAO, ENCFF643CGH 1550640654 ENCODE Processing Pipeline 2607cabb191d2423eb12f89a2973a40a https://www.encodeproject.org/files/ENCFF204CZS/@@download/ENCFF204CZS.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF484ASN bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAO, ENCFF807MUK 837651103 ENCODE Processing Pipeline 3674473d861823a7d320bea17ec8f05f https://www.encodeproject.org/files/ENCFF484ASN/@@download/ENCFF484ASN.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF520PEP bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAP, ENCFF807MUK 816287844 ENCODE Processing Pipeline b48f1aa234b495376685154acd532276 https://www.encodeproject.org/files/ENCFF520PEP/@@download/ENCFF520PEP.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000YOB bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 1 459043417 Michael Snyder, Stanford 9da7bce746b7a3855fc31010f84ede6c https://www.encodeproject.org/files/ENCFF000YOB/@@download/ENCFF000YOB.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YOC bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 1 542874495 Michael Snyder, Stanford 2a8e8caa17e4deec1f91f97e93257449 https://www.encodeproject.org/files/ENCFF000YOC/@@download/ENCFF000YOC.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YOD bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VNH 2074550 Michael Snyder, Stanford 24556ad14169208e0db0c278750722d5 https://www.encodeproject.org/files/ENCFF000YOD/@@download/ENCFF000YOD.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YOE fastq reads ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1070829024 Michael Snyder, Stanford a55d85f91a18ea2850fc3b5053da5deb https://www.encodeproject.org/files/ENCFF000YOE/@@download/ENCFF000YOE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YOG fastq reads ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 793263569 Michael Snyder, Stanford d25df13fb7021a919f34f7316ee0e95c https://www.encodeproject.org/files/ENCFF000YOG/@@download/ENCFF000YOG.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YOI bigWig signal ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 374693403 Michael Snyder, Stanford 283a65221cdf2deb62b9992dc51c8db9 https://www.encodeproject.org/files/ENCFF000YOI/@@download/ENCFF000YOI.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VNH bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 798205 Michael Snyder, Stanford 0b23a5f7826f7719d4c7b71a54db8c89 https://www.encodeproject.org/files/ENCFF001VNH/@@download/ENCFF001VNH.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF068XVC bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YOG, ENCFF643CGH 623093231 ENCODE Processing Pipeline f09c6530480586f1aae943cc19954db9 https://www.encodeproject.org/files/ENCFF068XVC/@@download/ENCFF068XVC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF220DXN bam unfiltered alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YOG, ENCFF643CGH 903954336 ENCODE Processing Pipeline 1890eea8c9530acaee88d031a50e3323 https://www.encodeproject.org/files/ENCFF220DXN/@@download/ENCFF220DXN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF754SCV bam unfiltered alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YOE, ENCFF643CGH 1210723777 ENCODE Processing Pipeline e4e10e97836e16008bf50a6de0907762 https://www.encodeproject.org/files/ENCFF754SCV/@@download/ENCFF754SCV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976DWY bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YOE, ENCFF643CGH 836421921 ENCODE Processing Pipeline 3568280eedcf434ba1e93c18beed60f0 https://www.encodeproject.org/files/ENCFF976DWY/@@download/ENCFF976DWY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282DFJ bam unfiltered alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YOG, ENCFF807MUK 901054495 ENCODE Processing Pipeline d8dcbff43f8e5e4a9e33902aa6b59e7c https://www.encodeproject.org/files/ENCFF282DFJ/@@download/ENCFF282DFJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF906VXN bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YOG, ENCFF807MUK 623607592 ENCODE Processing Pipeline 44e2e94fe5c903937a9269cfd6cdfe21 https://www.encodeproject.org/files/ENCFF906VXN/@@download/ENCFF906VXN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF807AJD bam unfiltered alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YOE, ENCFF807MUK 1206593043 ENCODE Processing Pipeline 6a15ca5621f22cde2774babd95d07ee3 https://www.encodeproject.org/files/ENCFF807AJD/@@download/ENCFF807AJD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF042SFT bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YOE, ENCFF807MUK 837033830 ENCODE Processing Pipeline 43affdd36f5d53891db2717f9605ae02 https://www.encodeproject.org/files/ENCFF042SFT/@@download/ENCFF042SFT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF692WZC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF474NLG 488009 ENCODE Processing Pipeline fc99f02febba6bf7d286938d4fc6d61e https://www.encodeproject.org/files/ENCFF692WZC/@@download/ENCFF692WZC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF943BDN bigWig signal p-value ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF906VXN 407148822 ENCODE Processing Pipeline 6af395466802e78467b8cdf4e67d5127 https://www.encodeproject.org/files/ENCFF943BDN/@@download/ENCFF943BDN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF782ELS bigWig signal p-value ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF042SFT, ENCFF710NTS, ENCFF906VXN 528887239 ENCODE Processing Pipeline 3bfeb4f6fb6909eeb1fa0ca71ec098be https://www.encodeproject.org/files/ENCFF782ELS/@@download/ENCFF782ELS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF912AHN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF906VXN 4867217 ENCODE Processing Pipeline 9166549a0bef72476e102ad417f38e98 https://www.encodeproject.org/files/ENCFF912AHN/@@download/ENCFF912AHN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228TYH bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF386FIZ 7876669 ENCODE Processing Pipeline e341b4bdd98369f587ee7507f826efa4 https://www.encodeproject.org/files/ENCFF228TYH/@@download/ENCFF228TYH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF317AIN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF042SFT, ENCFF710NTS 4992350 ENCODE Processing Pipeline 9fe7d779b69b121ed7b469075d758d9e https://www.encodeproject.org/files/ENCFF317AIN/@@download/ENCFF317AIN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF386FIZ bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF042SFT, ENCFF710NTS, ENCFF906VXN 3510066 ENCODE Processing Pipeline 13d3449b2c1f2a3d85f276c4dff934a0 https://www.encodeproject.org/files/ENCFF386FIZ/@@download/ENCFF386FIZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF098JZZ bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF912AHN 10790197 ENCODE Processing Pipeline fafc00eb1f98e20c3fae3675a13f350e https://www.encodeproject.org/files/ENCFF098JZZ/@@download/ENCFF098JZZ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780MBM bed narrowPeak conservative idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF317AIN, ENCFF386FIZ, ENCFF912AHN 226888 ENCODE Processing Pipeline dca636cdd0e2849e9463ecb02a718f08 https://www.encodeproject.org/files/ENCFF780MBM/@@download/ENCFF780MBM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF264JMN bigWig fold change over control ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF906VXN 336855166 ENCODE Processing Pipeline c35385d0754239f13bdc609abd58ceaf https://www.encodeproject.org/files/ENCFF264JMN/@@download/ENCFF264JMN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF633TLX bigWig fold change over control ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF042SFT, ENCFF710NTS, ENCFF906VXN 633918672 ENCODE Processing Pipeline 86365d20617a92bef6cbaef004321c68 https://www.encodeproject.org/files/ENCFF633TLX/@@download/ENCFF633TLX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF474NLG bed narrowPeak optimal idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF317AIN, ENCFF386FIZ, ENCFF912AHN 236039 ENCODE Processing Pipeline fe108db88c03657b64f8b0ec52bd7c3e https://www.encodeproject.org/files/ENCFF474NLG/@@download/ENCFF474NLG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF618MGF bigWig signal p-value ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF042SFT, ENCFF710NTS 445521627 ENCODE Processing Pipeline 1e5f9f98d71bdf1a21db66080a3b9c5b https://www.encodeproject.org/files/ENCFF618MGF/@@download/ENCFF618MGF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF434RSV bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF317AIN 10917902 ENCODE Processing Pipeline a7b62eb4fa15d74b8879587928aa9afb https://www.encodeproject.org/files/ENCFF434RSV/@@download/ENCFF434RSV.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF196HTD bigWig fold change over control ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF042SFT, ENCFF710NTS 422635231 ENCODE Processing Pipeline f1a828f6ecc0a077e2dae93ffd470573 https://www.encodeproject.org/files/ENCFF196HTD/@@download/ENCFF196HTD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF402XBZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF780MBM 475799 ENCODE Processing Pipeline 5ec6ca232a3515128fa791163f59022d https://www.encodeproject.org/files/ENCFF402XBZ/@@download/ENCFF402XBZ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169FNX bigWig signal p-value ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF068XVC, ENCFF976DWY 528813799 ENCODE Processing Pipeline 3d4e6a61ce51363c2e8225a0982ff362 https://www.encodeproject.org/files/ENCFF169FNX/@@download/ENCFF169FNX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF879XKY bigWig fold change over control ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF976DWY 427672465 ENCODE Processing Pipeline 8b8423aaed8f04c6b481851a8ca1bdb8 https://www.encodeproject.org/files/ENCFF879XKY/@@download/ENCFF879XKY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF497XBI bigWig fold change over control ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF068XVC 337251886 ENCODE Processing Pipeline c779ea54589214f70d7cd540f2d94f1f https://www.encodeproject.org/files/ENCFF497XBI/@@download/ENCFF497XBI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339TEC bigWig fold change over control ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF068XVC, ENCFF976DWY 630355091 ENCODE Processing Pipeline d67df5a4f5f1f64d6d16a6b5eebeadc0 https://www.encodeproject.org/files/ENCFF339TEC/@@download/ENCFF339TEC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF865AWY bigWig signal p-value ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF976DWY 588831507 ENCODE Processing Pipeline 8eeabd40452ac5ce5c6af09ace256805 https://www.encodeproject.org/files/ENCFF865AWY/@@download/ENCFF865AWY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF597CNC bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF976DWY 5003141 ENCODE Processing Pipeline c3ef2be2351d104b4fee1a07992f1793 https://www.encodeproject.org/files/ENCFF597CNC/@@download/ENCFF597CNC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF531RWP bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF597CNC 10933724 ENCODE Processing Pipeline 3d69330fcba1b8123e7986af46ba8df7 https://www.encodeproject.org/files/ENCFF531RWP/@@download/ENCFF531RWP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF734CJH bed narrowPeak conservative idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF138HLO, ENCFF419RSJ, ENCFF587HWD, ENCFF597CNC 227045 ENCODE Processing Pipeline 3e156bea19565d96dcbe468174d3ce4e https://www.encodeproject.org/files/ENCFF734CJH/@@download/ENCFF734CJH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF167RXK bed narrowPeak optimal idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF138HLO, ENCFF419RSJ, ENCFF587HWD, ENCFF597CNC 231740 ENCODE Processing Pipeline 9fb1d6927269b28a07d2a4418fb2486b https://www.encodeproject.org/files/ENCFF167RXK/@@download/ENCFF167RXK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF444VMI bigWig signal p-value ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF068XVC 375835281 ENCODE Processing Pipeline 6a01cbb8d12c24868aadeb5bdb28c688 https://www.encodeproject.org/files/ENCFF444VMI/@@download/ENCFF444VMI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF587HWD bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF068XVC 4862254 ENCODE Processing Pipeline b60c9ca96400e0311c85b087cf7f6d5d https://www.encodeproject.org/files/ENCFF587HWD/@@download/ENCFF587HWD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138HLO bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF068XVC, ENCFF976DWY 3501333 ENCODE Processing Pipeline 4eab57df1806b70d1e94a62b440a02d2 https://www.encodeproject.org/files/ENCFF138HLO/@@download/ENCFF138HLO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF225QYB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF734CJH 477204 ENCODE Processing Pipeline bc38a2f849cf99b5b7bba221f320f6c8 https://www.encodeproject.org/files/ENCFF225QYB/@@download/ENCFF225QYB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF900MKF bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF587HWD 10788770 ENCODE Processing Pipeline 15437315fe9da296ac91f30ac26dc278 https://www.encodeproject.org/files/ENCFF900MKF/@@download/ENCFF900MKF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388XTZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF167RXK 482827 ENCODE Processing Pipeline 4e68a055243498f8dda1fb22e3bb758f https://www.encodeproject.org/files/ENCFF388XTZ/@@download/ENCFF388XTZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF707SAL bigBed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF138HLO 7859558 ENCODE Processing Pipeline ce30f50e7ccee67dbc4231ee6eac0c43 https://www.encodeproject.org/files/ENCFF707SAL/@@download/ENCFF707SAL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000QJT bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QKF 651616111 Richard Myers, HAIB 39b0054740634de5c0835dc3afa333b6 https://www.encodeproject.org/files/ENCFF000QJT/@@download/ENCFF000QJT.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000QJU bigBed broadPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UMB 156851 Richard Myers, HAIB 11b24f9bf231b4e82e5046d5d1a55fb3 https://www.encodeproject.org/files/ENCFF000QJU/@@download/ENCFF000QJU.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000QJV bigBed broadPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UMC 1457393 Richard Myers, HAIB e1df68bae6f009575b579030dd97e0f3 https://www.encodeproject.org/files/ENCFF000QJV/@@download/ENCFF000QJV.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000QJW bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QKI 1068625433 Richard Myers, HAIB 7aa214fcebd46a0af153437f8fe85a69 https://www.encodeproject.org/files/ENCFF000QJW/@@download/ENCFF000QJW.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000QJZ bigWig raw signal ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 6891263 Richard Myers, HAIB 9becec0cf19780ceb815bbe3f3d59c1b https://www.encodeproject.org/files/ENCFF000QJZ/@@download/ENCFF000QJZ.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF000QKA bigWig raw signal ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 38289861 Richard Myers, HAIB 90a334ff291c31ec565fe3a48e10f4cb https://www.encodeproject.org/files/ENCFF000QKA/@@download/ENCFF000QKA.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF000QKF fastq reads ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 707329662 Richard Myers, HAIB 017471644cf8b8f05a0e7c31b3ad0f8e https://www.encodeproject.org/files/ENCFF000QKF/@@download/ENCFF000QKF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000QKI fastq reads ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1091684327 Richard Myers, HAIB 6501b550811ccb574f5cd02b9bb5fb2f https://www.encodeproject.org/files/ENCFF000QKI/@@download/ENCFF000QKI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEU/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001UMB bed broadPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 73111 Richard Myers, HAIB cd54504c6d0639983b7f883b3aa7fc3e https://www.encodeproject.org/files/ENCFF001UMB/@@download/ENCFF001UMB.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF001UMC bed broadPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 780775 Richard Myers, HAIB 12795568909c4fa8a89df95b3a2f6c09 https://www.encodeproject.org/files/ENCFF001UMC/@@download/ENCFF001UMC.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF002CMX bed narrowPeak optimal idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 477726 ENCODE Consortium Analysis Working Group ad2e68ab363f735a8ae9c4144c611460 https://www.encodeproject.org/files/ENCFF002CMX/@@download/ENCFF002CMX.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF648NKC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMX 1048797 ENCODE Consortium aba1f321aa1c9e3e43db20379766fe1c https://www.encodeproject.org/files/ENCFF648NKC/@@download/ENCFF648NKC.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF033HSE bam unfiltered alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKF, ENCFF643CGH 870334186 ENCODE Processing Pipeline 06d1f5940c8d8976e1878726dc94239c https://www.encodeproject.org/files/ENCFF033HSE/@@download/ENCFF033HSE.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF567GMS bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKF, ENCFF643CGH 314274999 ENCODE Processing Pipeline 3fcb9ae7eac6017d046db9fdae60a240 https://www.encodeproject.org/files/ENCFF567GMS/@@download/ENCFF567GMS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF723CCK bam unfiltered alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKI, ENCFF643CGH 1367082469 ENCODE Processing Pipeline 7a3ca0a15d6b7908a0b324c9b2eceea5 https://www.encodeproject.org/files/ENCFF723CCK/@@download/ENCFF723CCK.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF067TWQ bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKI, ENCFF643CGH 732096181 ENCODE Processing Pipeline 0b4e602e207b942e965e1c7f044929eb https://www.encodeproject.org/files/ENCFF067TWQ/@@download/ENCFF067TWQ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF470KXE bam unfiltered alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKF, ENCFF807MUK 868022856 ENCODE Processing Pipeline 38677f62d3a1a6091f4a133096172988 https://www.encodeproject.org/files/ENCFF470KXE/@@download/ENCFF470KXE.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF189XLI bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKF, ENCFF807MUK 314613447 ENCODE Processing Pipeline 3fead3e9598f0ce64f3686cc9ce43ccd https://www.encodeproject.org/files/ENCFF189XLI/@@download/ENCFF189XLI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF280JRK bam unfiltered alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKI, ENCFF807MUK 1364721177 ENCODE Processing Pipeline 0713d0d16856cbeb940a763d5ad7ceae https://www.encodeproject.org/files/ENCFF280JRK/@@download/ENCFF280JRK.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF872BSD bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKI, ENCFF807MUK 732713870 ENCODE Processing Pipeline c09b4756f74c36bf14527f52df5fe98b https://www.encodeproject.org/files/ENCFF872BSD/@@download/ENCFF872BSD.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF955NDO bigWig signal p-value ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF567GMS, ENCFF913HVS 360771250 ENCODE Processing Pipeline 41e97f2b0e155089f399a5a86c06bfd3 https://www.encodeproject.org/files/ENCFF955NDO/@@download/ENCFF955NDO.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF128ALY bigWig signal p-value ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067TWQ, ENCFF234NVU, ENCFF913HVS 614292126 ENCODE Processing Pipeline f383e6269341ae4700f8f6ce20724ce3 https://www.encodeproject.org/files/ENCFF128ALY/@@download/ENCFF128ALY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF230VJT bigWig signal p-value ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067TWQ, ENCFF234NVU, ENCFF567GMS, ENCFF913HVS 638026892 ENCODE Processing Pipeline a7dab16f98e045aded9e19c5ad1212f8 https://www.encodeproject.org/files/ENCFF230VJT/@@download/ENCFF230VJT.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF404MNG bigWig fold change over control ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067TWQ, ENCFF234NVU, ENCFF913HVS 357318789 ENCODE Processing Pipeline b4c2b3ca0434a13d86472f87e13dc896 https://www.encodeproject.org/files/ENCFF404MNG/@@download/ENCFF404MNG.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF551ZHN bigWig fold change over control ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF567GMS, ENCFF913HVS 148829575 ENCODE Processing Pipeline a4635d341ca63c084cf04bd68ee766f3 https://www.encodeproject.org/files/ENCFF551ZHN/@@download/ENCFF551ZHN.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF023AFF bigWig fold change over control ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067TWQ, ENCFF234NVU, ENCFF567GMS, ENCFF913HVS 488567089 ENCODE Processing Pipeline 4f6b20f3af4952025fc551c6cf3a1e6b https://www.encodeproject.org/files/ENCFF023AFF/@@download/ENCFF023AFF.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF541WVG bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF567GMS, ENCFF913HVS 2421088 ENCODE Processing Pipeline 3bbca13cf836fd9b3061d2d9d000ff37 https://www.encodeproject.org/files/ENCFF541WVG/@@download/ENCFF541WVG.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF908XHK bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067TWQ, ENCFF234NVU, ENCFF913HVS 5930295 ENCODE Processing Pipeline dce3876dc35ff66f9ce31a1e98a96d32 https://www.encodeproject.org/files/ENCFF908XHK/@@download/ENCFF908XHK.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF842DGW bigBed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF541WVG 5341845 ENCODE Processing Pipeline 1703ace719dfe2a144e637aaccc5346e https://www.encodeproject.org/files/ENCFF842DGW/@@download/ENCFF842DGW.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF535FVE bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067TWQ, ENCFF234NVU, ENCFF567GMS, ENCFF913HVS 6003961 ENCODE Processing Pipeline 848e5667d4bfa1ea05c8b4392248d48a https://www.encodeproject.org/files/ENCFF535FVE/@@download/ENCFF535FVE.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF087AIY bigBed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF908XHK 13162484 ENCODE Processing Pipeline 8d5e5f0b77c9604cdb8989366bbe53f3 https://www.encodeproject.org/files/ENCFF087AIY/@@download/ENCFF087AIY.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF922RRJ bigBed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF535FVE 13290388 ENCODE Processing Pipeline 22010be82bd6ca15b4de250bb6eae1bc https://www.encodeproject.org/files/ENCFF922RRJ/@@download/ENCFF922RRJ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF157ELX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF938BND 268933 ENCODE Processing Pipeline 36d8e00121d911d3f97e37a1e82eeb84 https://www.encodeproject.org/files/ENCFF157ELX/@@download/ENCFF157ELX.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF024TJO bed narrowPeak optimal idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF535FVE, ENCFF541WVG, ENCFF908XHK 507864 ENCODE Processing Pipeline 0dd0a3eb71a0ca45616c9c9568ab7bb5 https://www.encodeproject.org/files/ENCFF024TJO/@@download/ENCFF024TJO.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF938BND bed narrowPeak conservative idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF535FVE, ENCFF541WVG, ENCFF908XHK 134424 ENCODE Processing Pipeline 7305cbf694d07d141a50db874c165cce https://www.encodeproject.org/files/ENCFF938BND/@@download/ENCFF938BND.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF052UCG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF024TJO 1084835 ENCODE Processing Pipeline 21bd4d34b63bf1c10be69aaefb642fc1 https://www.encodeproject.org/files/ENCFF052UCG/@@download/ENCFF052UCG.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF983TTF bigWig signal p-value ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189XLI, ENCFF701KUD 296362934 ENCODE Processing Pipeline 0f29757c0369bb61b0517c64ff0de62b https://www.encodeproject.org/files/ENCFF983TTF/@@download/ENCFF983TTF.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF687EPM bigWig fold change over control ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189XLI, ENCFF701KUD 150111637 ENCODE Processing Pipeline c4fa9daaf100179cdd08d4282beaa485 https://www.encodeproject.org/files/ENCFF687EPM/@@download/ENCFF687EPM.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF085GZR bigWig signal p-value ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 514340738 ENCODE Processing Pipeline d8972e1983d6aaabe5cbe319d59e364c https://www.encodeproject.org/files/ENCFF085GZR/@@download/ENCFF085GZR.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF281GRT bigWig signal p-value ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF189XLI, ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 733419119 ENCODE Processing Pipeline aa99777624faec5b7d43e163caac3344 https://www.encodeproject.org/files/ENCFF281GRT/@@download/ENCFF281GRT.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF673NLS bigWig fold change over control ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 359281105 ENCODE Processing Pipeline c03286e75f14713c82f90c054faf02c4 https://www.encodeproject.org/files/ENCFF673NLS/@@download/ENCFF673NLS.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF701OSU bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189XLI, ENCFF701KUD 2427491 ENCODE Processing Pipeline ecadcaf2b4c40e427cd5818e778ecdad https://www.encodeproject.org/files/ENCFF701OSU/@@download/ENCFF701OSU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF720DVS bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 5822760 ENCODE Processing Pipeline a211c953b14fb046093aa85149bb2475 https://www.encodeproject.org/files/ENCFF720DVS/@@download/ENCFF720DVS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF374WFD bigBed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701OSU 5346886 ENCODE Processing Pipeline aff35ca59c0862847cfa965cbb59c48d https://www.encodeproject.org/files/ENCFF374WFD/@@download/ENCFF374WFD.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF384ERU bigWig fold change over control ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF189XLI, ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 491076311 ENCODE Processing Pipeline cc3fb37dbd83faabc1d346de24de8be4 https://www.encodeproject.org/files/ENCFF384ERU/@@download/ENCFF384ERU.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF223XFI bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF189XLI, ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 5964855 ENCODE Processing Pipeline b9006b9b1bff6e1dfd4026729fc7f6c3 https://www.encodeproject.org/files/ENCFF223XFI/@@download/ENCFF223XFI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF195IBH bigBed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223XFI 13228183 ENCODE Processing Pipeline 1f68d446b2cac06ee7a8d42d26611a07 https://www.encodeproject.org/files/ENCFF195IBH/@@download/ENCFF195IBH.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF328XKC bed narrowPeak optimal idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF223XFI, ENCFF701OSU, ENCFF720DVS 497639 ENCODE Processing Pipeline 01d30b98e8410f018839a27847bfd7fc https://www.encodeproject.org/files/ENCFF328XKC/@@download/ENCFF328XKC.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF500DIS bigBed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF720DVS 13041974 ENCODE Processing Pipeline 3d24037ee393b1db55432e52f208678a https://www.encodeproject.org/files/ENCFF500DIS/@@download/ENCFF500DIS.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF294BOQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF049NZU 268124 ENCODE Processing Pipeline 1090e4e54c48104997cf86816d9c2acc https://www.encodeproject.org/files/ENCFF294BOQ/@@download/ENCFF294BOQ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF716IKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF328XKC 1064879 ENCODE Processing Pipeline 2cda74b97b64d7dd6dfdf018c451bbd1 https://www.encodeproject.org/files/ENCFF716IKZ/@@download/ENCFF716IKZ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF049NZU bed narrowPeak conservative idr thresholded peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF223XFI, ENCFF701OSU, ENCFF720DVS 134790 ENCODE Processing Pipeline 17e6eca4ceab61afbec594d552571ad4 https://www.encodeproject.org/files/ENCFF049NZU/@@download/ENCFF049NZU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000XXD bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKX 1643929 Michael Snyder, Stanford df040dd466c8220c895f18901c233edf https://www.encodeproject.org/files/ENCFF000XXD/@@download/ENCFF000XXD.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000XXE bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XXZ 504207091 Michael Snyder, Stanford 1063d1b89cee8d3fa193ab35a76c3ad3 https://www.encodeproject.org/files/ENCFF000XXE/@@download/ENCFF000XXE.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000XXF bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XXX 453120725 Michael Snyder, Stanford 6f6d291099511a47943baebd53bc0c20 https://www.encodeproject.org/files/ENCFF000XXF/@@download/ENCFF000XXF.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000XXG bigWig signal ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 373116248 Michael Snyder, Stanford b1bff03d657be83cfa8157225150717f https://www.encodeproject.org/files/ENCFF000XXG/@@download/ENCFF000XXG.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000XXX fastq reads ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 932201474 Michael Snyder, Stanford f2b409c4fa64d5e3c0f4a0efbe370cb3 https://www.encodeproject.org/files/ENCFF000XXX/@@download/ENCFF000XXX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000XXZ fastq reads ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1054267987 Michael Snyder, Stanford 0620ac97bb1d147f240cbcd9035c67eb https://www.encodeproject.org/files/ENCFF000XXZ/@@download/ENCFF000XXZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF001VKX bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 711459 Michael Snyder, Stanford 9eb388977d144d850072d7f8cecf0b4d https://www.encodeproject.org/files/ENCFF001VKX/@@download/ENCFF001VKX.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002CUT bed narrowPeak optimal idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 157443 ENCODE Consortium Analysis Working Group c10b815febb8b315038eb377878d4075 https://www.encodeproject.org/files/ENCFF002CUT/@@download/ENCFF002CUT.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample missing control alignments ENCFF142YRM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUT 451619 ENCODE Consortium f71897fc80421673337bc85e704d9bdb https://www.encodeproject.org/files/ENCFF142YRM/@@download/ENCFF142YRM.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF380VYQ bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXX, ENCFF643CGH 749250973 ENCODE Processing Pipeline a5e4c63af6f924b4fef7293c00ef2f68 https://www.encodeproject.org/files/ENCFF380VYQ/@@download/ENCFF380VYQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF569JCK bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXZ, ENCFF643CGH 816901672 ENCODE Processing Pipeline 60e04abb4c29938b13093ca8373607c8 https://www.encodeproject.org/files/ENCFF569JCK/@@download/ENCFF569JCK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF743FPG bam unfiltered alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXX, ENCFF643CGH 1156869195 ENCODE Processing Pipeline 272d27f89c5e91336310fadf388d7f08 https://www.encodeproject.org/files/ENCFF743FPG/@@download/ENCFF743FPG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF321PFO bam unfiltered alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXZ, ENCFF643CGH 1274340205 ENCODE Processing Pipeline 12a41043e5ee7dc068b343ddac6ac96f https://www.encodeproject.org/files/ENCFF321PFO/@@download/ENCFF321PFO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF334BCB bam unfiltered alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXZ, ENCFF807MUK 1267990627 ENCODE Processing Pipeline 3690ed9c8c7d2948599dc46a8f047fc0 https://www.encodeproject.org/files/ENCFF334BCB/@@download/ENCFF334BCB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF212ITE bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXZ, ENCFF807MUK 817308680 ENCODE Processing Pipeline 781969b51ec4525fb080d0ffbd0c95b5 https://www.encodeproject.org/files/ENCFF212ITE/@@download/ENCFF212ITE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF939RSC bam unfiltered alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXX, ENCFF807MUK 1151345477 ENCODE Processing Pipeline 8f5c7df761c385b5ebcd1ea2406853aa https://www.encodeproject.org/files/ENCFF939RSC/@@download/ENCFF939RSC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF513YON bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXX, ENCFF807MUK 749628531 ENCODE Processing Pipeline 90d1d3dbdd0aa7a4d45fae7ad60fab21 https://www.encodeproject.org/files/ENCFF513YON/@@download/ENCFF513YON.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF027TJR bigWig signal p-value ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF380VYQ 533953944 ENCODE Processing Pipeline e470248781d2e6d089cb7c9db5f92fd7 https://www.encodeproject.org/files/ENCFF027TJR/@@download/ENCFF027TJR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF773COA bed narrowPeak conservative idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF571GYX, ENCFF871SCU, ENCFF925FLA 125865 ENCODE Processing Pipeline a4629744fd5ae5a045238ca0c27aeed4 https://www.encodeproject.org/files/ENCFF773COA/@@download/ENCFF773COA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF112IYO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF773COA 300737 ENCODE Processing Pipeline 2e9753481bf77078c3e4d33552491f8a https://www.encodeproject.org/files/ENCFF112IYO/@@download/ENCFF112IYO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF682WHD bigWig fold change over control ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF569JCK 466983810 ENCODE Processing Pipeline 0d87771f3f982a78f19c24a8bf6d26ab https://www.encodeproject.org/files/ENCFF682WHD/@@download/ENCFF682WHD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF042DHU bigWig fold change over control ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF380VYQ 433884774 ENCODE Processing Pipeline 347a0fcc5a70e246fa567478c7fa2f00 https://www.encodeproject.org/files/ENCFF042DHU/@@download/ENCFF042DHU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF832NSV bigWig signal p-value ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF569JCK 560284357 ENCODE Processing Pipeline 466dff5e854a2b09819c1235f7c7d578 https://www.encodeproject.org/files/ENCFF832NSV/@@download/ENCFF832NSV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF201GFY bigWig signal p-value ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF380VYQ, ENCFF569JCK 734544192 ENCODE Processing Pipeline b27fba3ee261e4f137b0cac1db68b211 https://www.encodeproject.org/files/ENCFF201GFY/@@download/ENCFF201GFY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF571GYX bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF380VYQ, ENCFF569JCK 4292796 ENCODE Processing Pipeline 06337367acc3ebb2ecc3debd3f434277 https://www.encodeproject.org/files/ENCFF571GYX/@@download/ENCFF571GYX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF746LSL bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF571GYX 9842917 ENCODE Processing Pipeline 6d8c598d42d23a8c3a0d873a2d8279cc https://www.encodeproject.org/files/ENCFF746LSL/@@download/ENCFF746LSL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF227GPX bigWig fold change over control ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF380VYQ, ENCFF569JCK 737701762 ENCODE Processing Pipeline c90182f238e520ed0b1927aaf2a546dc https://www.encodeproject.org/files/ENCFF227GPX/@@download/ENCFF227GPX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF871SCU bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF569JCK 4864635 ENCODE Processing Pipeline 368458ea8532a6356a66a706f764ac55 https://www.encodeproject.org/files/ENCFF871SCU/@@download/ENCFF871SCU.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF925FLA bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF380VYQ 5236445 ENCODE Processing Pipeline 876b726312daf656c672f842d3b85e97 https://www.encodeproject.org/files/ENCFF925FLA/@@download/ENCFF925FLA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF800TLH bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF871SCU 11090536 ENCODE Processing Pipeline 0ff1d6ae5bc685461f62d36aa0ef22ed https://www.encodeproject.org/files/ENCFF800TLH/@@download/ENCFF800TLH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF267XXJ bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF925FLA 13191711 ENCODE Processing Pipeline c832ed0e683f950ec3fcabf66d04587a https://www.encodeproject.org/files/ENCFF267XXJ/@@download/ENCFF267XXJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF059GWW bed narrowPeak optimal idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF571GYX, ENCFF871SCU, ENCFF925FLA 142807 ENCODE Processing Pipeline 30429265177f4280c52941afaf9c14b7 https://www.encodeproject.org/files/ENCFF059GWW/@@download/ENCFF059GWW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF258KMM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059GWW 327443 ENCODE Processing Pipeline ed954b823d9edbd3f486aec2edf914e6 https://www.encodeproject.org/files/ENCFF258KMM/@@download/ENCFF258KMM.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF654DEW bigWig signal p-value ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF212ITE 541935407 ENCODE Processing Pipeline 2a56c641822a8210da7de2c5f9fe1487 https://www.encodeproject.org/files/ENCFF654DEW/@@download/ENCFF654DEW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF748TUP bigWig signal p-value ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF513YON 530531600 ENCODE Processing Pipeline b32e59c3ca4279bc0357a8f7d46d732c https://www.encodeproject.org/files/ENCFF748TUP/@@download/ENCFF748TUP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF682WFZ bigWig fold change over control ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF212ITE, ENCFF513YON 736357173 ENCODE Processing Pipeline e840f69b82a247cb1e24f326e2ea4838 https://www.encodeproject.org/files/ENCFF682WFZ/@@download/ENCFF682WFZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF304RUP bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF212ITE 4869264 ENCODE Processing Pipeline 77f7c98cc30fb528074854e7ee61e981 https://www.encodeproject.org/files/ENCFF304RUP/@@download/ENCFF304RUP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF249JPR bigWig signal p-value ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF212ITE, ENCFF513YON 731389778 ENCODE Processing Pipeline 5b55c3d9b796d620ebba67bd1ddb66db https://www.encodeproject.org/files/ENCFF249JPR/@@download/ENCFF249JPR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF897CLT bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF003GUP 13193085 ENCODE Processing Pipeline 1c67efac769b09ab429e579d39d5b7ba https://www.encodeproject.org/files/ENCFF897CLT/@@download/ENCFF897CLT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF197ETL bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF777PZJ 9849119 ENCODE Processing Pipeline ba8564a247eb8591e8dafa2ffc4070a7 https://www.encodeproject.org/files/ENCFF197ETL/@@download/ENCFF197ETL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF645MNT bed narrowPeak conservative idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003GUP, ENCFF304RUP, ENCFF777PZJ 124151 ENCODE Processing Pipeline cfca14c6e93bfa93c67ab28a46b1a0b7 https://www.encodeproject.org/files/ENCFF645MNT/@@download/ENCFF645MNT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF566DZM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF645MNT 298110 ENCODE Processing Pipeline f6794a0c0a98bc52a4dd38a94b119bba https://www.encodeproject.org/files/ENCFF566DZM/@@download/ENCFF566DZM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF446FPT bigWig fold change over control ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF212ITE 471868967 ENCODE Processing Pipeline 49320fd01c02693bf3e3f74fd863a76f https://www.encodeproject.org/files/ENCFF446FPT/@@download/ENCFF446FPT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF011BEE bigBed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF304RUP 11092687 ENCODE Processing Pipeline a2ce683b44a808c2b962dffd6162a49c https://www.encodeproject.org/files/ENCFF011BEE/@@download/ENCFF011BEE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF933GHY bed narrowPeak optimal idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003GUP, ENCFF304RUP, ENCFF777PZJ 138519 ENCODE Processing Pipeline 27647aa248b0cf30ae4671167b3b5fa0 https://www.encodeproject.org/files/ENCFF933GHY/@@download/ENCFF933GHY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF586XRX bigWig fold change over control ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF513YON 433738375 ENCODE Processing Pipeline a55f1aba9ea4fdfe9cf5aa09f5d44bee https://www.encodeproject.org/files/ENCFF586XRX/@@download/ENCFF586XRX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF003GUP bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF513YON 5236960 ENCODE Processing Pipeline 3479a76d6597c1dd5332a56411676510 https://www.encodeproject.org/files/ENCFF003GUP/@@download/ENCFF003GUP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF777PZJ bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF212ITE, ENCFF513YON 4348113 ENCODE Processing Pipeline ed32917940a71aeb2f800f2adce31378 https://www.encodeproject.org/files/ENCFF777PZJ/@@download/ENCFF777PZJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF249EEG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF933GHY 321344 ENCODE Processing Pipeline da5b22712e341fc9f374ffe89ace07bf https://www.encodeproject.org/files/ENCFF249EEG/@@download/ENCFF249EEG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000RYY bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RZJ 1074164532 Vishwanath Iyer, UTA 66077b5998348c24ad85c0af6b06cdd0 https://www.encodeproject.org/files/ENCFF000RYY/@@download/ENCFF000RYY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RYZ bigWig base overlap signal ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1226941738 Vishwanath Iyer, UTA 59469ff8eb88468961627a5ba658d3b1 https://www.encodeproject.org/files/ENCFF000RYZ/@@download/ENCFF000RYZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RZA bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RZL 1120957289 Vishwanath Iyer, UTA c5156972894d4aaf2647a7d821ac46af https://www.encodeproject.org/files/ENCFF000RZA/@@download/ENCFF000RZA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZB bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTM 945989 Vishwanath Iyer, UTA 09203a64900a0b7c43dfb130596e23c7 https://www.encodeproject.org/files/ENCFF000RZB/@@download/ENCFF000RZB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZD bigWig signal ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 3001760998 Vishwanath Iyer, UTA e3d6a410c3468491d554b7c294e336ca https://www.encodeproject.org/files/ENCFF000RZD/@@download/ENCFF000RZD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RZJ fastq reads ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1131436080 Vishwanath Iyer, UTA 61f6a18cd29019b92c5dd30078135068 https://www.encodeproject.org/files/ENCFF000RZJ/@@download/ENCFF000RZJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZL fastq reads ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1228076846 Vishwanath Iyer, UTA b4a39f2804b85e11aa784113c500927d https://www.encodeproject.org/files/ENCFF000RZL/@@download/ENCFF000RZL.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UTM bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 456240 Vishwanath Iyer, UTA 2264dbd85b777cefec625966d59f9942 https://www.encodeproject.org/files/ENCFF001UTM/@@download/ENCFF001UTM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002DBH bed narrowPeak optimal idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 177271 ENCODE Consortium Analysis Working Group d814e2e5ed7d55614384b4e9cdee9a55 https://www.encodeproject.org/files/ENCFF002DBH/@@download/ENCFF002DBH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF498UIF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBH 438326 ENCODE Consortium d59fd89f513c5905b8569877063b321e https://www.encodeproject.org/files/ENCFF498UIF/@@download/ENCFF498UIF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF414VTM bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZL, ENCFF643CGH 727916481 ENCODE Processing Pipeline a5fcf9b9f92f461896cbd558138fab5e https://www.encodeproject.org/files/ENCFF414VTM/@@download/ENCFF414VTM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF390BGO bam unfiltered alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZL, ENCFF643CGH 1605899282 ENCODE Processing Pipeline 338c4b1eb8bdc9b79841d04c672aeba5 https://www.encodeproject.org/files/ENCFF390BGO/@@download/ENCFF390BGO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF807FZS bam unfiltered alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZJ, ENCFF643CGH 1502396973 ENCODE Processing Pipeline 50150d9272a7e2a522f572c7041e38a2 https://www.encodeproject.org/files/ENCFF807FZS/@@download/ENCFF807FZS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF439LPX bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZJ, ENCFF643CGH 746323465 ENCODE Processing Pipeline d8109d4fbb0ff4cc7c3fd0d1c7dad793 https://www.encodeproject.org/files/ENCFF439LPX/@@download/ENCFF439LPX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF470HDG bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZL, ENCFF807MUK 728121413 ENCODE Processing Pipeline 2d8337c358539f1e1b34903dd1d8debd https://www.encodeproject.org/files/ENCFF470HDG/@@download/ENCFF470HDG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF981GZW bam unfiltered alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZJ, ENCFF807MUK 1500835827 ENCODE Processing Pipeline dd6fa93fb7c1306d0b70defb0e014778 https://www.encodeproject.org/files/ENCFF981GZW/@@download/ENCFF981GZW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF819FIE bam unfiltered alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZL, ENCFF807MUK 1604211727 ENCODE Processing Pipeline e086c0e79fbc036f33b71804e5433d60 https://www.encodeproject.org/files/ENCFF819FIE/@@download/ENCFF819FIE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF525AMA bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZJ, ENCFF807MUK 746478482 ENCODE Processing Pipeline ef3f8b8fed4177fffee3aefb7af60148 https://www.encodeproject.org/files/ENCFF525AMA/@@download/ENCFF525AMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF366NGJ bigWig signal p-value ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF439LPX, ENCFF946WAV 405524282 ENCODE Processing Pipeline 88b89f5e9a62ca9dc1214e595fd809d2 https://www.encodeproject.org/files/ENCFF366NGJ/@@download/ENCFF366NGJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF122XQJ bigWig signal p-value ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF414VTM, ENCFF946WAV 464218685 ENCODE Processing Pipeline 4534044aabc7a656ceb19779dffc9e60 https://www.encodeproject.org/files/ENCFF122XQJ/@@download/ENCFF122XQJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF898PMR bigWig signal p-value ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF414VTM, ENCFF439LPX, ENCFF946WAV 522945944 ENCODE Processing Pipeline 244dc2e9092f3411f3f81c68142a781d https://www.encodeproject.org/files/ENCFF898PMR/@@download/ENCFF898PMR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF002MKY bigWig fold change over control ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF439LPX, ENCFF946WAV 319758298 ENCODE Processing Pipeline fc42935d22b90d886f3c8b62b7489b96 https://www.encodeproject.org/files/ENCFF002MKY/@@download/ENCFF002MKY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF649NOL bigWig fold change over control ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF414VTM, ENCFF946WAV 320224816 ENCODE Processing Pipeline 07e99012d49eeb3ce2446cc89395f484 https://www.encodeproject.org/files/ENCFF649NOL/@@download/ENCFF649NOL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF006FZE bigWig fold change over control ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF414VTM, ENCFF439LPX, ENCFF946WAV 538290919 ENCODE Processing Pipeline e477c159ddb1407a6b643daf51e42cca https://www.encodeproject.org/files/ENCFF006FZE/@@download/ENCFF006FZE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF727HFS bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF439LPX, ENCFF946WAV 5898227 ENCODE Processing Pipeline 69728b04a9eb0180588a780f87e0d720 https://www.encodeproject.org/files/ENCFF727HFS/@@download/ENCFF727HFS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF542QFN bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF727HFS 12939286 ENCODE Processing Pipeline 9645eb1e5762a56b0cb562213f88c426 https://www.encodeproject.org/files/ENCFF542QFN/@@download/ENCFF542QFN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF733NRM bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF167LQI 12939924 ENCODE Processing Pipeline 633a30e60abcab738d040a2c9130eb5a https://www.encodeproject.org/files/ENCFF733NRM/@@download/ENCFF733NRM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF605PXD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF551FXB 400204 ENCODE Processing Pipeline a7c7522a70d85499cc382ae2f52046ad https://www.encodeproject.org/files/ENCFF605PXD/@@download/ENCFF605PXD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF167LQI bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF414VTM, ENCFF946WAV 5780964 ENCODE Processing Pipeline d0d8fd1a5dc3f79222dbdffdfd0d6e3c https://www.encodeproject.org/files/ENCFF167LQI/@@download/ENCFF167LQI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF447SBH bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF436ZDL 12920030 ENCODE Processing Pipeline 971542f6b88efce2c1091c6041a8a752 https://www.encodeproject.org/files/ENCFF447SBH/@@download/ENCFF447SBH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF436ZDL bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF414VTM, ENCFF439LPX, ENCFF946WAV 6752488 ENCODE Processing Pipeline f3c5d88099ef608f7dc71f69ebe1bfab https://www.encodeproject.org/files/ENCFF436ZDL/@@download/ENCFF436ZDL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF551FXB bed narrowPeak conservative idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF167LQI, ENCFF419RSJ, ENCFF436ZDL, ENCFF727HFS 170829 ENCODE Processing Pipeline 0f32db3a4911420d40b42cbc3bfce175 https://www.encodeproject.org/files/ENCFF551FXB/@@download/ENCFF551FXB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF300OKR bed narrowPeak optimal idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF167LQI, ENCFF419RSJ, ENCFF436ZDL, ENCFF727HFS 180329 ENCODE Processing Pipeline bda873ea336fa87f18dcc99f5b4fc027 https://www.encodeproject.org/files/ENCFF300OKR/@@download/ENCFF300OKR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF253VOB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF300OKR 417483 ENCODE Processing Pipeline da13556c8d5d3add9240c4f443b425e4 https://www.encodeproject.org/files/ENCFF253VOB/@@download/ENCFF253VOB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF478IMO bigWig signal p-value ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF525AMA, ENCFF602XLT 472202047 ENCODE Processing Pipeline 026373b4a44bf5a07847d1b7e1b626e0 https://www.encodeproject.org/files/ENCFF478IMO/@@download/ENCFF478IMO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF999ADS bigWig signal p-value ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF470HDG, ENCFF602XLT 450333194 ENCODE Processing Pipeline b9a8ce9a6871dbe372d6eb3f415d7cc3 https://www.encodeproject.org/files/ENCFF999ADS/@@download/ENCFF999ADS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF964KSN bigWig fold change over control ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF470HDG, ENCFF602XLT 320215921 ENCODE Processing Pipeline 7416266b72baa29e6235e245ac4088c7 https://www.encodeproject.org/files/ENCFF964KSN/@@download/ENCFF964KSN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF505PBW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF021KDL 414954 ENCODE Processing Pipeline 40450f021d5f303baa78dc953ef7ccc4 https://www.encodeproject.org/files/ENCFF505PBW/@@download/ENCFF505PBW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF808TOF bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF525AMA, ENCFF602XLT 5897919 ENCODE Processing Pipeline 1bcf0fd9c15dd5d5bf653b17de022d59 https://www.encodeproject.org/files/ENCFF808TOF/@@download/ENCFF808TOF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF373LWH bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF470HDG, ENCFF525AMA, ENCFF602XLT 6753776 ENCODE Processing Pipeline c9c90bec457388c31544e4f0a04f93e5 https://www.encodeproject.org/files/ENCFF373LWH/@@download/ENCFF373LWH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF182ARF bed narrowPeak conservative idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF341DDR, ENCFF373LWH, ENCFF808TOF 171956 ENCODE Processing Pipeline 33b583c5b6634b75ae0da7b1620fb41f https://www.encodeproject.org/files/ENCFF182ARF/@@download/ENCFF182ARF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF999WNG bigWig signal p-value ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF470HDG, ENCFF525AMA, ENCFF602XLT 523068564 ENCODE Processing Pipeline 713cfad1805de411f8208c8d8fdb45ea https://www.encodeproject.org/files/ENCFF999WNG/@@download/ENCFF999WNG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF553VXD bigWig fold change over control ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF470HDG, ENCFF525AMA, ENCFF602XLT 538182200 ENCODE Processing Pipeline 4136c42330f196d363ffa95526de194d https://www.encodeproject.org/files/ENCFF553VXD/@@download/ENCFF553VXD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF650PXR bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF341DDR 12935465 ENCODE Processing Pipeline dd0a0838a8daccde86dae6e7d2cf7e81 https://www.encodeproject.org/files/ENCFF650PXR/@@download/ENCFF650PXR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF414DLH bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF373LWH 12917012 ENCODE Processing Pipeline 66e232071e3cfc72bb3a52a236ce098e https://www.encodeproject.org/files/ENCFF414DLH/@@download/ENCFF414DLH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF021KDL bed narrowPeak optimal idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF341DDR, ENCFF373LWH, ENCFF808TOF 179969 ENCODE Processing Pipeline 806e8f646a0ceaa45c7766f5667a367e https://www.encodeproject.org/files/ENCFF021KDL/@@download/ENCFF021KDL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF164CWW bigWig fold change over control ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF525AMA, ENCFF602XLT 313174822 ENCODE Processing Pipeline e5465326d152dd285928304daba19f48 https://www.encodeproject.org/files/ENCFF164CWW/@@download/ENCFF164CWW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF341DDR bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF470HDG, ENCFF602XLT 5781698 ENCODE Processing Pipeline c7a62f66f629504ab98163e2610b1032 https://www.encodeproject.org/files/ENCFF341DDR/@@download/ENCFF341DDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF975YAQ bigBed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF808TOF 12935230 ENCODE Processing Pipeline af5d1d59682ad223ab99fd2c02a42bc5 https://www.encodeproject.org/files/ENCFF975YAQ/@@download/ENCFF975YAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF242RXL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF182ARF 401221 ENCODE Processing Pipeline c47329982c6ba5a565153a453a206304 https://www.encodeproject.org/files/ENCFF242RXL/@@download/ENCFF242RXL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RHL bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RHW 668262815 Richard Myers, HAIB 511387d10fc63f03e3db967e2c7818d1 https://www.encodeproject.org/files/ENCFF000RHL/@@download/ENCFF000RHL.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000RHN bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RHV 450542994 Richard Myers, HAIB bb2bdd9b3393a515b94ed10c6574e316 https://www.encodeproject.org/files/ENCFF000RHN/@@download/ENCFF000RHN.bam hg19 archived low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000RHP bigWig raw signal ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 9217161 Richard Myers, HAIB d5fd59a626fd0de5776abf09966bf643 https://www.encodeproject.org/files/ENCFF000RHP/@@download/ENCFF000RHP.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF000RHQ bigWig raw signal ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 1341581 Richard Myers, HAIB 063bbf782bd8333e2191ddf940ff7fff https://www.encodeproject.org/files/ENCFF000RHQ/@@download/ENCFF000RHQ.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF000RHV fastq reads ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 463880254 Richard Myers, HAIB 5184ed8cfe911f46c4dd602c3b7cea61 https://www.encodeproject.org/files/ENCFF000RHV/@@download/ENCFF000RHV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF000RHW fastq reads ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 696414432 Richard Myers, HAIB 209050cd9b62328b4a68b693a9df15cb https://www.encodeproject.org/files/ENCFF000RHW/@@download/ENCFF000RHW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF920NFF bam unfiltered alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHW, ENCFF643CGH 906808948 ENCODE Processing Pipeline f33cfff7bfea3f0209bf6ef77e82b681 https://www.encodeproject.org/files/ENCFF920NFF/@@download/ENCFF920NFF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF406KPS bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHW, ENCFF643CGH 521550417 ENCODE Processing Pipeline 138b386531fbf8b699af48fd9d5e88e0 https://www.encodeproject.org/files/ENCFF406KPS/@@download/ENCFF406KPS.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF072PMA bam unfiltered alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHV, ENCFF643CGH 678862397 ENCODE Processing Pipeline e181dcb81ef369cc811b3ada8b385c51 https://www.encodeproject.org/files/ENCFF072PMA/@@download/ENCFF072PMA.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF414YAT bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHV, ENCFF643CGH 400147039 ENCODE Processing Pipeline ec722298268282a803fbe84bdf2edc47 https://www.encodeproject.org/files/ENCFF414YAT/@@download/ENCFF414YAT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF514PYC bam unfiltered alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHW, ENCFF807MUK 902838599 ENCODE Processing Pipeline 74535ed7f5f7d88af7c19d7cbda8bf34 https://www.encodeproject.org/files/ENCFF514PYC/@@download/ENCFF514PYC.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF983NQT bam unfiltered alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHV, ENCFF807MUK 674054731 ENCODE Processing Pipeline cf3c46d471fb2ee64c0aa85aa2c5a660 https://www.encodeproject.org/files/ENCFF983NQT/@@download/ENCFF983NQT.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF002HVX bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHW, ENCFF807MUK 521818077 ENCODE Processing Pipeline 6177641e703611bd8195b2f5e8e830ab https://www.encodeproject.org/files/ENCFF002HVX/@@download/ENCFF002HVX.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF698QEQ bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHV, ENCFF807MUK 400358556 ENCODE Processing Pipeline 33dd9d51c697bfe6c01be02b0c899a33 https://www.encodeproject.org/files/ENCFF698QEQ/@@download/ENCFF698QEQ.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF520JQI bigWig signal p-value ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406KPS, ENCFF503VFG 421089780 ENCODE Processing Pipeline 624eba91a2a7f056a8cba5b9343fff20 https://www.encodeproject.org/files/ENCFF520JQI/@@download/ENCFF520JQI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF677MYP bigWig signal p-value ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414YAT, ENCFF503VFG 504564981 ENCODE Processing Pipeline 03e50e5a7a987e18a4ff67a9aaa8c214 https://www.encodeproject.org/files/ENCFF677MYP/@@download/ENCFF677MYP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF227SMZ bigWig fold change over control ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406KPS, ENCFF503VFG 271044195 ENCODE Processing Pipeline c963f8112481ce68562864d830eddbca https://www.encodeproject.org/files/ENCFF227SMZ/@@download/ENCFF227SMZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF793JZQ bigWig signal p-value ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406KPS, ENCFF414YAT, ENCFF503VFG 605509510 ENCODE Processing Pipeline 07ed21407850cb11513b4b1675890b29 https://www.encodeproject.org/files/ENCFF793JZQ/@@download/ENCFF793JZQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF691RKW bigWig fold change over control ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414YAT, ENCFF503VFG 269926718 ENCODE Processing Pipeline 6cfae0434c76e2da4ea71b201438bd79 https://www.encodeproject.org/files/ENCFF691RKW/@@download/ENCFF691RKW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF023DPZ bigWig fold change over control ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406KPS, ENCFF414YAT, ENCFF503VFG 468617754 ENCODE Processing Pipeline 08ad5299f2eec0f41617401c1e541f7f https://www.encodeproject.org/files/ENCFF023DPZ/@@download/ENCFF023DPZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF435ATR bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414YAT, ENCFF503VFG 3668775 ENCODE Processing Pipeline 89d71c9daae18865de0c05f414959038 https://www.encodeproject.org/files/ENCFF435ATR/@@download/ENCFF435ATR.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF758EWB bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406KPS, ENCFF503VFG 4121226 ENCODE Processing Pipeline 8a7ef0f92c2fa3c1c3ad0c13d5bbe00a https://www.encodeproject.org/files/ENCFF758EWB/@@download/ENCFF758EWB.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF634YAH bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406KPS, ENCFF414YAT, ENCFF503VFG 4453094 ENCODE Processing Pipeline c94efb6cd5b150df606f31f09208e923 https://www.encodeproject.org/files/ENCFF634YAH/@@download/ENCFF634YAH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF030WMT bigBed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF758EWB 10405832 ENCODE Processing Pipeline 7a955a047d13b3c60170d4261f111acd https://www.encodeproject.org/files/ENCFF030WMT/@@download/ENCFF030WMT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF508TUP bigBed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF435ATR 8140294 ENCODE Processing Pipeline 0114ee09ffbbfb714fd757d562eb2c53 https://www.encodeproject.org/files/ENCFF508TUP/@@download/ENCFF508TUP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF433NIE bed narrowPeak optimal idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF435ATR, ENCFF634YAH, ENCFF758EWB 72498 ENCODE Processing Pipeline fdb3e4cdbf57d192f28e621aadf462fb https://www.encodeproject.org/files/ENCFF433NIE/@@download/ENCFF433NIE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF723ESM bed narrowPeak conservative idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF435ATR, ENCFF634YAH, ENCFF758EWB 28005 ENCODE Processing Pipeline 3d668a2b94957c7bd8385becfe9a9033 https://www.encodeproject.org/files/ENCFF723ESM/@@download/ENCFF723ESM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF746ICH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF723ESM 95390 ENCODE Processing Pipeline 16a2ec7155a0f6bbcfeaaf1d6d8b908e https://www.encodeproject.org/files/ENCFF746ICH/@@download/ENCFF746ICH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF656FJO bigBed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF634YAH 10989086 ENCODE Processing Pipeline 561b18ba42ee39c7cec70b6f127bc1ce https://www.encodeproject.org/files/ENCFF656FJO/@@download/ENCFF656FJO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF725NRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF433NIE 181129 ENCODE Processing Pipeline 2da4c81f922c427721b2164af539e81b https://www.encodeproject.org/files/ENCFF725NRZ/@@download/ENCFF725NRZ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF219WVN bigWig fold change over control ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF960JYT 269420878 ENCODE Processing Pipeline 0bdbc8a8928943a138b118b1ad6e6b0b https://www.encodeproject.org/files/ENCFF219WVN/@@download/ENCFF219WVN.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF830USZ bigWig signal p-value ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF960JYT 472227920 ENCODE Processing Pipeline 6a0ba4673fcdecee83672965482dc7ac https://www.encodeproject.org/files/ENCFF830USZ/@@download/ENCFF830USZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF707DIG bigWig signal p-value ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF698QEQ, ENCFF960JYT 414570566 ENCODE Processing Pipeline 97372c8e859a73c74eacc4a5b0f15620 https://www.encodeproject.org/files/ENCFF707DIG/@@download/ENCFF707DIG.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF532GWP bigWig signal p-value ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002HVX, ENCFF698QEQ, ENCFF960JYT 508191089 ENCODE Processing Pipeline a32ee9b24d75f830a838ae0b89b0d622 https://www.encodeproject.org/files/ENCFF532GWP/@@download/ENCFF532GWP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF124RWP bigWig fold change over control ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF698QEQ, ENCFF960JYT 268757425 ENCODE Processing Pipeline f5d780c1871f64aa8bc1432713b4a8f4 https://www.encodeproject.org/files/ENCFF124RWP/@@download/ENCFF124RWP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF898CBF bigWig fold change over control ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002HVX, ENCFF698QEQ, ENCFF960JYT 477344160 ENCODE Processing Pipeline e5abeb04a67e34f9d05627153be0cc09 https://www.encodeproject.org/files/ENCFF898CBF/@@download/ENCFF898CBF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF372ATJ bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF698QEQ, ENCFF960JYT 3668176 ENCODE Processing Pipeline 496295e76a9b26bbb35963b6f863572e https://www.encodeproject.org/files/ENCFF372ATJ/@@download/ENCFF372ATJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF664LLB bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF960JYT 4118885 ENCODE Processing Pipeline 214ffc454a6936c248f2e3f08437b859 https://www.encodeproject.org/files/ENCFF664LLB/@@download/ENCFF664LLB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF593GDN bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002HVX, ENCFF698QEQ, ENCFF960JYT 4464635 ENCODE Processing Pipeline 86568da3f0a0e05930d44dd74fb2409e https://www.encodeproject.org/files/ENCFF593GDN/@@download/ENCFF593GDN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF639YKF bigBed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF664LLB 10397322 ENCODE Processing Pipeline 5bb4e804ec1130fefcca3f11cd458c0d https://www.encodeproject.org/files/ENCFF639YKF/@@download/ENCFF639YKF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF925AWC bigBed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593GDN 10982575 ENCODE Processing Pipeline 1d167947a4154522619cb34ff4608f82 https://www.encodeproject.org/files/ENCFF925AWC/@@download/ENCFF925AWC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF499QUE bed narrowPeak optimal idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF372ATJ, ENCFF593GDN, ENCFF664LLB 67651 ENCODE Processing Pipeline f67dc576679a3b4f475e5598c9bf2068 https://www.encodeproject.org/files/ENCFF499QUE/@@download/ENCFF499QUE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF534BCO bigBed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372ATJ 8144168 ENCODE Processing Pipeline d268c2d7dcc838b54afb067133055a0a https://www.encodeproject.org/files/ENCFF534BCO/@@download/ENCFF534BCO.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF930BTJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077UMS 92221 ENCODE Processing Pipeline abb6c3e6b40a39123cad8ce7efcd016e https://www.encodeproject.org/files/ENCFF930BTJ/@@download/ENCFF930BTJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF368MZI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF499QUE 174742 ENCODE Processing Pipeline 37fc95d53bd297791c288c6a7a318cf9 https://www.encodeproject.org/files/ENCFF368MZI/@@download/ENCFF368MZI.bigBed hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF077UMS bed narrowPeak conservative idr thresholded peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF372ATJ, ENCFF593GDN, ENCFF664LLB 25638 ENCODE Processing Pipeline fce3437de71d37e4f6fc12039f090ae3 https://www.encodeproject.org/files/ENCFF077UMS/@@download/ENCFF077UMS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF676ZCH bam unfiltered alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 100 ENCFF228VAR, ENCFF739VNU, ENCFF807MUK 8253213555 ENCODE Processing Pipeline 384eb498b83f30b43cbe3db460bff85e https://www.encodeproject.org/files/ENCFF676ZCH/@@download/ENCFF676ZCH.bam hg19 released ENCFF143KYV bam unfiltered alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 100 ENCFF107ZQT, ENCFF387RWU, ENCFF807MUK 7757321479 ENCODE Processing Pipeline b16934ed55c26d4d3ff227d848d416c3 https://www.encodeproject.org/files/ENCFF143KYV/@@download/ENCFF143KYV.bam hg19 released ENCFF387RWU fastq reads ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 1 100 paired-ended 1 ENCFF107ZQT 3671651858 Michael Snyder, Stanford 5f5ee8e25261eaeedfb742c429c89222 SRA:SRR5111212 https://www.encodeproject.org/files/ENCFF387RWU/@@download/ENCFF387RWU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF739VNU fastq reads ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 1 100 paired-ended 2 ENCFF228VAR 3977254650 Michael Snyder, Stanford bc6b440968652f36c99716aad14350a2 SRA:SRR5111211 https://www.encodeproject.org/files/ENCFF739VNU/@@download/ENCFF739VNU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF107ZQT fastq reads ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 1 100 paired-ended 2 ENCFF387RWU 3723682364 Michael Snyder, Stanford 9ee989dd92c9999058f51422d55eb4f0 SRA:SRR5111212 https://www.encodeproject.org/files/ENCFF107ZQT/@@download/ENCFF107ZQT.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF228VAR fastq reads ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 1 100 paired-ended 1 ENCFF739VNU 3919404298 Michael Snyder, Stanford 54b8bf503656adb77f558c759dd27df6 SRA:SRR5111211 https://www.encodeproject.org/files/ENCFF228VAR/@@download/ENCFF228VAR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF585HLM bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 100 ENCFF228VAR, ENCFF739VNU, ENCFF807MUK 6658346880 ENCODE Processing Pipeline e133facfb594a320982d5c025409c03b https://www.encodeproject.org/files/ENCFF585HLM/@@download/ENCFF585HLM.bam hg19 released ENCFF261IPD bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 100 ENCFF107ZQT, ENCFF387RWU, ENCFF807MUK 6279949494 ENCODE Processing Pipeline 6319567efd8df69f66d27887647b2498 https://www.encodeproject.org/files/ENCFF261IPD/@@download/ENCFF261IPD.bam hg19 released ENCFF496WPJ bigWig signal p-value ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF261IPD, ENCFF581ZJL 1258307293 ENCODE Processing Pipeline 854076d790aaf223390fda018bc17785 https://www.encodeproject.org/files/ENCFF496WPJ/@@download/ENCFF496WPJ.bigWig hg19 released ENCFF597QLR bigWig signal p-value ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF051LWI, ENCFF585HLM 1364828356 ENCODE Processing Pipeline 1be10d9256cdce2ac639c94abcd41227 https://www.encodeproject.org/files/ENCFF597QLR/@@download/ENCFF597QLR.bigWig hg19 released ENCFF261RZN bigWig signal p-value ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF261IPD, ENCFF581ZJL, ENCFF585HLM 2225534491 ENCODE Processing Pipeline 095364129558be8d00b99e4a2b82078e https://www.encodeproject.org/files/ENCFF261RZN/@@download/ENCFF261RZN.bigWig hg19 released ENCFF773LGC bigWig fold change over control ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF261IPD, ENCFF581ZJL 1431662378 ENCODE Processing Pipeline 2ac8182019c4e3f4ff8f293f3d8ec05c https://www.encodeproject.org/files/ENCFF773LGC/@@download/ENCFF773LGC.bigWig hg19 released ENCFF196ZGI bigWig fold change over control ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF051LWI, ENCFF585HLM 1412071854 ENCODE Processing Pipeline 58dc8693ffd8c6ba5b6aa9ae815a1790 https://www.encodeproject.org/files/ENCFF196ZGI/@@download/ENCFF196ZGI.bigWig hg19 released ENCFF617XZE bigWig fold change over control ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF261IPD, ENCFF581ZJL, ENCFF585HLM 2403761406 ENCODE Processing Pipeline 851ab784bfc669933d7ae463997f85a8 https://www.encodeproject.org/files/ENCFF617XZE/@@download/ENCFF617XZE.bigWig hg19 released ENCFF792BGD bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF261IPD, ENCFF581ZJL 7131811 ENCODE Processing Pipeline 67d81b44082df3acf776e6da2c5fab41 https://www.encodeproject.org/files/ENCFF792BGD/@@download/ENCFF792BGD.bed.gz hg19 released ENCFF247ZEK bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF051LWI, ENCFF585HLM 7215524 ENCODE Processing Pipeline 568aa4401b01bb57d232d82928afe0d4 https://www.encodeproject.org/files/ENCFF247ZEK/@@download/ENCFF247ZEK.bed.gz hg19 released ENCFF657HIZ bigBed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF226IEC 14496030 ENCODE Processing Pipeline fd8c8f549ca377456ccba8eed0d33bd3 https://www.encodeproject.org/files/ENCFF657HIZ/@@download/ENCFF657HIZ.bigBed hg19 released ENCFF663HVK bed narrowPeak conservative idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF001TDO, ENCFF226IEC, ENCFF247ZEK, ENCFF792BGD 1153076 ENCODE Processing Pipeline a5c27b4a3d369bf4c1c5c75e02b57645 https://www.encodeproject.org/files/ENCFF663HVK/@@download/ENCFF663HVK.bed.gz hg19 released ENCFF226IEC bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF261IPD, ENCFF581ZJL, ENCFF585HLM 7331628 ENCODE Processing Pipeline bb7ab94faf3c35c0751195507dbfaf7e https://www.encodeproject.org/files/ENCFF226IEC/@@download/ENCFF226IEC.bed.gz hg19 released ENCFF370DLZ bigBed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF247ZEK 13807133 ENCODE Processing Pipeline b8ae56c5010f0f07e2cbd693cc424d0e https://www.encodeproject.org/files/ENCFF370DLZ/@@download/ENCFF370DLZ.bigBed hg19 released ENCFF357RFK bigBed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF792BGD 11738525 ENCODE Processing Pipeline 81ee7906ad961271babfd5956f45fd57 https://www.encodeproject.org/files/ENCFF357RFK/@@download/ENCFF357RFK.bigBed hg19 released ENCFF524KZK bigBed narrowPeak conservative idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF663HVK 2382122 ENCODE Processing Pipeline 582434a083848124a5ed5df87b71182c https://www.encodeproject.org/files/ENCFF524KZK/@@download/ENCFF524KZK.bigBed hg19 released ENCFF132YVG bigBed narrowPeak optimal idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF788EBS 2963586 ENCODE Processing Pipeline 482ab73e971d57b177fe9724e51a002a https://www.encodeproject.org/files/ENCFF132YVG/@@download/ENCFF132YVG.bigBed hg19 released ENCFF788EBS bed narrowPeak optimal idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF001TDO, ENCFF226IEC, ENCFF247ZEK, ENCFF792BGD 1540943 ENCODE Processing Pipeline 3a0d9fd7b87bc7f13bbf44c634b50a0c https://www.encodeproject.org/files/ENCFF788EBS/@@download/ENCFF788EBS.bed.gz hg19 released ENCFF325LLQ bam unfiltered alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 100 ENCFF107ZQT, ENCFF387RWU, ENCFF643CGH 7760666288 ENCODE Processing Pipeline b9bbe96315c8fa60734bf39bb4ce64a6 https://www.encodeproject.org/files/ENCFF325LLQ/@@download/ENCFF325LLQ.bam GRCh38 released ENCFF750YXZ bam unfiltered alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 100 ENCFF228VAR, ENCFF643CGH, ENCFF739VNU 8256147651 ENCODE Processing Pipeline 1c7cf27a59291ce2bb36087f3bcb4b86 https://www.encodeproject.org/files/ENCFF750YXZ/@@download/ENCFF750YXZ.bam GRCh38 released ENCFF267EEY bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 100 ENCFF107ZQT, ENCFF387RWU, ENCFF643CGH 6284754107 ENCODE Processing Pipeline a1d81d1804b2e04a8d732640fe2f8fc3 https://www.encodeproject.org/files/ENCFF267EEY/@@download/ENCFF267EEY.bam GRCh38 released ENCFF908CYX bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 100 ENCFF228VAR, ENCFF643CGH, ENCFF739VNU 6663598439 ENCODE Processing Pipeline b1ca9d91bb1c1f8e9e9283f47224c9c3 https://www.encodeproject.org/files/ENCFF908CYX/@@download/ENCFF908CYX.bam GRCh38 released ENCFF522CRP bigWig signal p-value ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF267EEY, ENCFF910IKB 1217745692 ENCODE Processing Pipeline 542aaaa4a33c16e4883f2bfed4409ec1 https://www.encodeproject.org/files/ENCFF522CRP/@@download/ENCFF522CRP.bigWig GRCh38 released ENCFF020JZW bigWig signal p-value ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF227IZS, ENCFF908CYX 1076641173 ENCODE Processing Pipeline bb2abdf5ac05acab7ccd53024da9aaa6 https://www.encodeproject.org/files/ENCFF020JZW/@@download/ENCFF020JZW.bigWig GRCh38 released ENCFF961YUC bigWig signal p-value ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF227IZS, ENCFF267EEY, ENCFF908CYX, ENCFF910IKB 1896676355 ENCODE Processing Pipeline 33eae407551e769e20ed7204299b6757 https://www.encodeproject.org/files/ENCFF961YUC/@@download/ENCFF961YUC.bigWig GRCh38 released ENCFF611OPH bigWig fold change over control ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF267EEY, ENCFF910IKB 1406795425 ENCODE Processing Pipeline 3289c27c1032fd4440481dfcc993e608 https://www.encodeproject.org/files/ENCFF611OPH/@@download/ENCFF611OPH.bigWig GRCh38 released ENCFF897JUI bigWig fold change over control ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF227IZS, ENCFF908CYX 1426745808 ENCODE Processing Pipeline 9744871c8067141675b384597e2555a5 https://www.encodeproject.org/files/ENCFF897JUI/@@download/ENCFF897JUI.bigWig GRCh38 released ENCFF911IYO bigWig fold change over control ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF227IZS, ENCFF267EEY, ENCFF908CYX, ENCFF910IKB 2393380952 ENCODE Processing Pipeline 2d740ac593e4ffbe2ef740b71bf973f2 https://www.encodeproject.org/files/ENCFF911IYO/@@download/ENCFF911IYO.bigWig GRCh38 released ENCFF777HYZ bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF267EEY, ENCFF910IKB 7103899 ENCODE Processing Pipeline e5ffbe0a27bfbd5c0be17af87777aa1c https://www.encodeproject.org/files/ENCFF777HYZ/@@download/ENCFF777HYZ.bed.gz GRCh38 released ENCFF953GBT bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF227IZS, ENCFF908CYX 7165573 ENCODE Processing Pipeline df1fb8a13c4ca361d6e42485219b29f3 https://www.encodeproject.org/files/ENCFF953GBT/@@download/ENCFF953GBT.bed.gz GRCh38 released ENCFF885VGV bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF227IZS, ENCFF267EEY, ENCFF908CYX, ENCFF910IKB 7269569 ENCODE Processing Pipeline 476140cf9f2e9a47e8557079ee0016c7 https://www.encodeproject.org/files/ENCFF885VGV/@@download/ENCFF885VGV.bed.gz GRCh38 released ENCFF915YDB bigBed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF777HYZ 11759732 ENCODE Processing Pipeline 7210810e88391a268ee19c014457c10c https://www.encodeproject.org/files/ENCFF915YDB/@@download/ENCFF915YDB.bigBed GRCh38 released ENCFF869MPV bigBed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF953GBT 13788096 ENCODE Processing Pipeline aa6f5d44d4fead0772a2c9946b35c239 https://www.encodeproject.org/files/ENCFF869MPV/@@download/ENCFF869MPV.bigBed GRCh38 released ENCFF739TIS bigBed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF885VGV 14431187 ENCODE Processing Pipeline 16a7629372b844eabdc6b1cd1e02ae8c https://www.encodeproject.org/files/ENCFF739TIS/@@download/ENCFF739TIS.bigBed GRCh38 released ENCFF195JOB bed narrowPeak conservative idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF777HYZ, ENCFF885VGV, ENCFF953GBT 1133273 ENCODE Processing Pipeline d54b5396de6029343654fc861b3da713 https://www.encodeproject.org/files/ENCFF195JOB/@@download/ENCFF195JOB.bed.gz GRCh38 released ENCFF492OAR bigBed narrowPeak conservative idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF195JOB 2353801 ENCODE Processing Pipeline 728250d2085e459162414fab5e1a6abd https://www.encodeproject.org/files/ENCFF492OAR/@@download/ENCFF492OAR.bigBed GRCh38 released ENCFF806GUF bed narrowPeak optimal idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF777HYZ, ENCFF885VGV, ENCFF953GBT 1520737 ENCODE Processing Pipeline 1dba0952313fc92e69d70299249b4b11 https://www.encodeproject.org/files/ENCFF806GUF/@@download/ENCFF806GUF.bed.gz GRCh38 released ENCFF882UCV bigBed narrowPeak optimal idr thresholded peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1, 2 ENCFF806GUF 2935941 ENCODE Processing Pipeline 9d1798b9e7baa1bd4eb6019f970587d9 https://www.encodeproject.org/files/ENCFF882UCV/@@download/ENCFF882UCV.bigBed GRCh38 released ENCFF219FRB bam unfiltered alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 100 ENCFF065DPP, ENCFF645KUF, ENCFF807MUK 5555793747 ENCODE Processing Pipeline 6f97983ac45f3b34b847939e5674d281 https://www.encodeproject.org/files/ENCFF219FRB/@@download/ENCFF219FRB.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF122RDI bam unfiltered alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 100 ENCFF202KVA, ENCFF235SEI, ENCFF807MUK 4652650681 ENCODE Processing Pipeline ff37a625f6ba3495343b528e2eeb77d8 https://www.encodeproject.org/files/ENCFF122RDI/@@download/ENCFF122RDI.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF065DPP fastq reads ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF645KUF 2561056894 Michael Snyder, Stanford 1c2f7b55347f91c165866830b3d3504e https://www.encodeproject.org/files/ENCFF065DPP/@@download/ENCFF065DPP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF235SEI fastq reads ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF202KVA 2159411891 Michael Snyder, Stanford 63f8938612fac356fcbf7a2a35696708 https://www.encodeproject.org/files/ENCFF235SEI/@@download/ENCFF235SEI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF202KVA fastq reads ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF235SEI 2126910940 Michael Snyder, Stanford 1b9ed62c64bb9daad5fa4e875e20bbb0 https://www.encodeproject.org/files/ENCFF202KVA/@@download/ENCFF202KVA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF645KUF fastq reads ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF065DPP 2527869810 Michael Snyder, Stanford 9d017e49c5ab2108a95ab5dcaa42958b https://www.encodeproject.org/files/ENCFF645KUF/@@download/ENCFF645KUF.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF778YDK bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 100 ENCFF202KVA, ENCFF235SEI, ENCFF807MUK 3570282680 ENCODE Processing Pipeline fef9a289fb2df975e9cf017a4842893f https://www.encodeproject.org/files/ENCFF778YDK/@@download/ENCFF778YDK.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF456JRF bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 100 ENCFF065DPP, ENCFF645KUF, ENCFF807MUK 4420752107 ENCODE Processing Pipeline 0c850b1a42473855c28d5be4827f03d9 https://www.encodeproject.org/files/ENCFF456JRF/@@download/ENCFF456JRF.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF914IRY bigWig signal p-value ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF456JRF, ENCFF581ZJL 1157350720 ENCODE Processing Pipeline c59aad23aa8f3158baaba002c4259610 https://www.encodeproject.org/files/ENCFF914IRY/@@download/ENCFF914IRY.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF663ULO bigWig signal p-value ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF778YDK 904876019 ENCODE Processing Pipeline fd804c09439c7c4a6a27f11c401128a0 https://www.encodeproject.org/files/ENCFF663ULO/@@download/ENCFF663ULO.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF236SRK bigWig signal p-value ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF456JRF, ENCFF581ZJL, ENCFF778YDK 1751292934 ENCODE Processing Pipeline 528fdf8b595cc34a478b0ba2ce0bff07 https://www.encodeproject.org/files/ENCFF236SRK/@@download/ENCFF236SRK.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF333BEH bigWig fold change over control ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF456JRF, ENCFF581ZJL 1157697112 ENCODE Processing Pipeline b0066affc94aae3db103cd84c8fca889 https://www.encodeproject.org/files/ENCFF333BEH/@@download/ENCFF333BEH.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF907XKD bigWig fold change over control ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF778YDK 1000767926 ENCODE Processing Pipeline 6d6fdfa48c874aa33d1d613f35bcf0a0 https://www.encodeproject.org/files/ENCFF907XKD/@@download/ENCFF907XKD.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF177OYI bigWig fold change over control ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF456JRF, ENCFF581ZJL, ENCFF778YDK 1983877603 ENCODE Processing Pipeline c77df4862e3b92c62f929c6008728d33 https://www.encodeproject.org/files/ENCFF177OYI/@@download/ENCFF177OYI.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF013YBA bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF456JRF, ENCFF581ZJL, ENCFF778YDK 7163683 ENCODE Processing Pipeline b14cdfadd7542923ecfed201b86fd87f https://www.encodeproject.org/files/ENCFF013YBA/@@download/ENCFF013YBA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF858SYW bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF778YDK 6557419 ENCODE Processing Pipeline 029d2e306bb7105473f65d2e1499a70e https://www.encodeproject.org/files/ENCFF858SYW/@@download/ENCFF858SYW.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF197HUM bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF456JRF, ENCFF581ZJL 6595225 ENCODE Processing Pipeline 314fa2ec3f2fc8d3c666dddc9f99c89b https://www.encodeproject.org/files/ENCFF197HUM/@@download/ENCFF197HUM.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF291SXL bigBed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF197HUM 11074806 ENCODE Processing Pipeline afd8c7044379b30d8892cd3ebc5afb4c https://www.encodeproject.org/files/ENCFF291SXL/@@download/ENCFF291SXL.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF094VRL bigBed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF858SYW 13273344 ENCODE Processing Pipeline 97d3d8f0a6968f0f4f9e8f664583fda5 https://www.encodeproject.org/files/ENCFF094VRL/@@download/ENCFF094VRL.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF878SJP bigBed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF013YBA 13123334 ENCODE Processing Pipeline 2bc0291899d873b9cc65c7fdb26245fb https://www.encodeproject.org/files/ENCFF878SJP/@@download/ENCFF878SJP.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF478DQU bed narrowPeak conservative idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF013YBA, ENCFF197HUM, ENCFF858SYW 56353 ENCODE Processing Pipeline cc77e5917106976df3d3ee5f2638e886 https://www.encodeproject.org/files/ENCFF478DQU/@@download/ENCFF478DQU.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF932UEC bed narrowPeak optimal idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF013YBA, ENCFF197HUM, ENCFF858SYW 69547 ENCODE Processing Pipeline 59e0cbc48512175f74a3919e0576ad96 https://www.encodeproject.org/files/ENCFF932UEC/@@download/ENCFF932UEC.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF853HAR bigBed narrowPeak conservative idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF478DQU 149457 ENCODE Processing Pipeline 6533de397deba3ca1c52024d6365d2d0 https://www.encodeproject.org/files/ENCFF853HAR/@@download/ENCFF853HAR.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF881HWZ bigBed narrowPeak optimal idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF932UEC 203940 ENCODE Processing Pipeline fea4ad456ac26443f2e8f127e14c1f71 https://www.encodeproject.org/files/ENCFF881HWZ/@@download/ENCFF881HWZ.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF413DVA bam unfiltered alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 100 ENCFF202KVA, ENCFF235SEI, ENCFF643CGH 4655002395 ENCODE Processing Pipeline 4d1233f1c628361a9c409d4bdc8df8c5 https://www.encodeproject.org/files/ENCFF413DVA/@@download/ENCFF413DVA.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF655NYQ bam unfiltered alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 100 ENCFF065DPP, ENCFF643CGH, ENCFF645KUF 5560104878 ENCODE Processing Pipeline d99c8c25a6b74e6daadaa3c39b627248 https://www.encodeproject.org/files/ENCFF655NYQ/@@download/ENCFF655NYQ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF951IVR bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 100 ENCFF202KVA, ENCFF235SEI, ENCFF643CGH 3573709764 ENCODE Processing Pipeline df045325f473e7d783afdeae76b83e19 https://www.encodeproject.org/files/ENCFF951IVR/@@download/ENCFF951IVR.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF410WYJ bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 100 ENCFF065DPP, ENCFF643CGH, ENCFF645KUF 4424574638 ENCODE Processing Pipeline 4e88fb8993ff97c2e3b85fea150a9d03 https://www.encodeproject.org/files/ENCFF410WYJ/@@download/ENCFF410WYJ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF711LKW bigWig signal p-value ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF410WYJ, ENCFF910IKB 1079913363 ENCODE Processing Pipeline 455fc350468e95804f5b8a0a14cab609 https://www.encodeproject.org/files/ENCFF711LKW/@@download/ENCFF711LKW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF583FJT bigWig signal p-value ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF951IVR 896630061 ENCODE Processing Pipeline 0126f36a5f797dd91da6a63aa821944b https://www.encodeproject.org/files/ENCFF583FJT/@@download/ENCFF583FJT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF958GOG bigWig signal p-value ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF410WYJ, ENCFF910IKB, ENCFF951IVR 1933711090 ENCODE Processing Pipeline e65b3e11a81d78b4a4267c104f80ce03 https://www.encodeproject.org/files/ENCFF958GOG/@@download/ENCFF958GOG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF373QMV bigWig fold change over control ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF410WYJ, ENCFF910IKB 1200339792 ENCODE Processing Pipeline 48e631181f48c4882d5f75379044e4f0 https://www.encodeproject.org/files/ENCFF373QMV/@@download/ENCFF373QMV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF706WKL bigWig fold change over control ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF951IVR 987042665 ENCODE Processing Pipeline f8f7d3bee904283b3095f4e7d575b9e7 https://www.encodeproject.org/files/ENCFF706WKL/@@download/ENCFF706WKL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF385ZWT bigWig fold change over control ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF410WYJ, ENCFF910IKB, ENCFF951IVR 1983246377 ENCODE Processing Pipeline 9f16ec3bc719d4ec45e89ae19c495487 https://www.encodeproject.org/files/ENCFF385ZWT/@@download/ENCFF385ZWT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF304VNY bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF410WYJ, ENCFF910IKB 6436499 ENCODE Processing Pipeline 5aee68969db10b7a5888bd48c8349a5a https://www.encodeproject.org/files/ENCFF304VNY/@@download/ENCFF304VNY.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF256EXP bigBed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF304VNY 11087279 ENCODE Processing Pipeline 2c5045586884ebbf8a6ff516c36297fb https://www.encodeproject.org/files/ENCFF256EXP/@@download/ENCFF256EXP.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF010MTV bigBed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF566YGJ 13129475 ENCODE Processing Pipeline 7f2b172d98bd7529a56a4ebb34725671 https://www.encodeproject.org/files/ENCFF010MTV/@@download/ENCFF010MTV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF817IGZ bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF227IZS, ENCFF951IVR 6423611 ENCODE Processing Pipeline b4ed51e566d80eea9d1007aff10a6898 https://www.encodeproject.org/files/ENCFF817IGZ/@@download/ENCFF817IGZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF776NRP bed narrowPeak conservative idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF304VNY, ENCFF419RSJ, ENCFF566YGJ, ENCFF817IGZ 55625 ENCODE Processing Pipeline 3fbc2d87d1069a805a6ea1c270db42c9 https://www.encodeproject.org/files/ENCFF776NRP/@@download/ENCFF776NRP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF566YGJ bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF227IZS, ENCFF410WYJ, ENCFF910IKB, ENCFF951IVR 7131176 ENCODE Processing Pipeline 98360556d3aaca66f4956ebfbae4baf2 https://www.encodeproject.org/files/ENCFF566YGJ/@@download/ENCFF566YGJ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF149SNH bigBed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF817IGZ 13280853 ENCODE Processing Pipeline a87c13b2539036b9e767c7a9a82b5f3d https://www.encodeproject.org/files/ENCFF149SNH/@@download/ENCFF149SNH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF269VCU bigBed narrowPeak conservative idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF776NRP 149820 ENCODE Processing Pipeline acf4e4d26cb9b59dbd8b59b0a92a2a1f https://www.encodeproject.org/files/ENCFF269VCU/@@download/ENCFF269VCU.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF644XES bed narrowPeak optimal idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF304VNY, ENCFF419RSJ, ENCFF566YGJ, ENCFF817IGZ 68018 ENCODE Processing Pipeline 56994a1ff485a6855877f0d684aab018 https://www.encodeproject.org/files/ENCFF644XES/@@download/ENCFF644XES.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF100NWJ bigBed narrowPeak optimal idr thresholded peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF644XES 167243 ENCODE Processing Pipeline 670316ca3d622d449b9134245557cefa https://www.encodeproject.org/files/ENCFF100NWJ/@@download/ENCFF100NWJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF000ZEZ bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VPP 3414323 Michael Snyder, Stanford 2d0a793ee08669f3499db06de41ec757 https://www.encodeproject.org/files/ENCFF000ZEZ/@@download/ENCFF000ZEZ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZFA bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 1 495654808 Michael Snyder, Stanford 306d3ebb6655a86514deeffc095f9b9c https://www.encodeproject.org/files/ENCFF000ZFA/@@download/ENCFF000ZFA.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZFB fastq reads ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 878866928 Michael Snyder, Stanford a25816c207106bb2953fcf5363934d7c https://www.encodeproject.org/files/ENCFF000ZFB/@@download/ENCFF000ZFB.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZFD fastq reads ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 814763302 Michael Snyder, Stanford dbb6a5c7576405f925b6a17f252e6edd https://www.encodeproject.org/files/ENCFF000ZFD/@@download/ENCFF000ZFD.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZFF bigWig signal ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 361994707 Michael Snyder, Stanford 69e0a03b7a79540b5e248d6d168c511c https://www.encodeproject.org/files/ENCFF000ZFF/@@download/ENCFF000ZFF.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZFG bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 1 467333331 Michael Snyder, Stanford fe10223f1733ebe2cdabfd18cccf5f80 https://www.encodeproject.org/files/ENCFF000ZFG/@@download/ENCFF000ZFG.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VPP bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1353696 Michael Snyder, Stanford 306c904ab969183a2dbaf7482691ec1d https://www.encodeproject.org/files/ENCFF001VPP/@@download/ENCFF001VPP.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF576HJC bam unfiltered alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZFB, ENCFF643CGH 1011766010 ENCODE Processing Pipeline 27d7a7cb818d48856a0c14cdbbe9aaeb https://www.encodeproject.org/files/ENCFF576HJC/@@download/ENCFF576HJC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF140ZMN bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZFB, ENCFF643CGH 676829144 ENCODE Processing Pipeline a08d579878c6878a2013de22217a6859 https://www.encodeproject.org/files/ENCFF140ZMN/@@download/ENCFF140ZMN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF920KZH bam unfiltered alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZFD, ENCFF643CGH 942400949 ENCODE Processing Pipeline 384b5e600301827a476418f9fc003ef9 https://www.encodeproject.org/files/ENCFF920KZH/@@download/ENCFF920KZH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF171VBC bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZFD, ENCFF643CGH 637309879 ENCODE Processing Pipeline 7b4d15b1a5e86bd618423e13dc890cc4 https://www.encodeproject.org/files/ENCFF171VBC/@@download/ENCFF171VBC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF447POJ bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZFB, ENCFF807MUK 677322179 ENCODE Processing Pipeline 9c9942d11919f44c8be423a2eda9bdda https://www.encodeproject.org/files/ENCFF447POJ/@@download/ENCFF447POJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198ERA bam unfiltered alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZFD, ENCFF807MUK 939515373 ENCODE Processing Pipeline f5ef20949c44adacf6cbcd8507d9811e https://www.encodeproject.org/files/ENCFF198ERA/@@download/ENCFF198ERA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF134QYH bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZFD, ENCFF807MUK 637841517 ENCODE Processing Pipeline fdc028e481babf82746f0289d11d2de6 https://www.encodeproject.org/files/ENCFF134QYH/@@download/ENCFF134QYH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF223EGE bam unfiltered alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZFB, ENCFF807MUK 1008367909 ENCODE Processing Pipeline 002ce3d5e18585c9aee8e6714c60d9ae https://www.encodeproject.org/files/ENCFF223EGE/@@download/ENCFF223EGE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF041XPD bigWig signal p-value ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF140ZMN 475147143 ENCODE Processing Pipeline 7497649037f143084d5a58327da02164 https://www.encodeproject.org/files/ENCFF041XPD/@@download/ENCFF041XPD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF215NEN bigWig signal p-value ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF171VBC 534651764 ENCODE Processing Pipeline f4bf58a40825d6edf5f41305d8175bf4 https://www.encodeproject.org/files/ENCFF215NEN/@@download/ENCFF215NEN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF799SDR bigWig fold change over control ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF140ZMN 349270195 ENCODE Processing Pipeline 2e18106b2152a7912b3125108bffb5e9 https://www.encodeproject.org/files/ENCFF799SDR/@@download/ENCFF799SDR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF201EBM bigWig signal p-value ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF140ZMN, ENCFF171VBC 576623081 ENCODE Processing Pipeline 6be1ac060a0301ae338b4714c420cd4e https://www.encodeproject.org/files/ENCFF201EBM/@@download/ENCFF201EBM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF421EAZ bigWig fold change over control ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF171VBC 335210611 ENCODE Processing Pipeline ba459aae305bbbdc649cc8a5ff3be604 https://www.encodeproject.org/files/ENCFF421EAZ/@@download/ENCFF421EAZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540SQX bigWig fold change over control ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF140ZMN, ENCFF171VBC 613013586 ENCODE Processing Pipeline 62e29a144e9d192540656bd9cabf2562 https://www.encodeproject.org/files/ENCFF540SQX/@@download/ENCFF540SQX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF898RKR bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF023NGN, ENCFF171VBC 4923181 ENCODE Processing Pipeline de6b6be8d061ae1b06c2179df6498352 https://www.encodeproject.org/files/ENCFF898RKR/@@download/ENCFF898RKR.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF920ITB bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF023NGN, ENCFF140ZMN 4907183 ENCODE Processing Pipeline 013431a479101f094aae9650c5b41848 https://www.encodeproject.org/files/ENCFF920ITB/@@download/ENCFF920ITB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF933XAT bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF898RKR 10801900 ENCODE Processing Pipeline c128bbed742c57d5d3ae2eb75a073232 https://www.encodeproject.org/files/ENCFF933XAT/@@download/ENCFF933XAT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595ZFJ bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF023NGN, ENCFF140ZMN, ENCFF171VBC 5540085 ENCODE Processing Pipeline fd8c7ce7aefb330bf2dac01816929c04 https://www.encodeproject.org/files/ENCFF595ZFJ/@@download/ENCFF595ZFJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338NPC bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF920ITB 10834225 ENCODE Processing Pipeline f4db6fb71b6ddc54c985ea3245e3d54b https://www.encodeproject.org/files/ENCFF338NPC/@@download/ENCFF338NPC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF875OOD bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF595ZFJ 12679258 ENCODE Processing Pipeline 32a6b8224af6b31cc7bdca227e737d2c https://www.encodeproject.org/files/ENCFF875OOD/@@download/ENCFF875OOD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF304LQU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF567XKS 635120 ENCODE Processing Pipeline 35d83e24c5bbacb966f964e06266ff8f https://www.encodeproject.org/files/ENCFF304LQU/@@download/ENCFF304LQU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF567XKS bed narrowPeak conservative idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF595ZFJ, ENCFF898RKR, ENCFF920ITB 343008 ENCODE Processing Pipeline a26aa5495638da3dad92f943c4f2124d https://www.encodeproject.org/files/ENCFF567XKS/@@download/ENCFF567XKS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF106YXG bed narrowPeak optimal idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF595ZFJ, ENCFF898RKR, ENCFF920ITB 355876 ENCODE Processing Pipeline 76abd36bb30120ad7ee294693c18f569 https://www.encodeproject.org/files/ENCFF106YXG/@@download/ENCFF106YXG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF028JHS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF106YXG 652482 ENCODE Processing Pipeline 1615efe518c3da79fd8550d3d1d3ed1a https://www.encodeproject.org/files/ENCFF028JHS/@@download/ENCFF028JHS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF649GSX bigWig signal p-value ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF447POJ, ENCFF710NTS 444116439 ENCODE Processing Pipeline b423b44f6f9c7e0f8ded64447082093c https://www.encodeproject.org/files/ENCFF649GSX/@@download/ENCFF649GSX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF593NOC bigWig fold change over control ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF447POJ, ENCFF710NTS 346288269 ENCODE Processing Pipeline f1ae61e020f6da7810c2e42c8c090c2a https://www.encodeproject.org/files/ENCFF593NOC/@@download/ENCFF593NOC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF910DVF bigWig signal p-value ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF134QYH, ENCFF710NTS 469212232 ENCODE Processing Pipeline 45518db7b18a9d27bffdea892b1ce6a3 https://www.encodeproject.org/files/ENCFF910DVF/@@download/ENCFF910DVF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF342OIT bigWig signal p-value ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF134QYH, ENCFF447POJ, ENCFF710NTS 576946346 ENCODE Processing Pipeline aa13eca17ca270851bb88a636147dba4 https://www.encodeproject.org/files/ENCFF342OIT/@@download/ENCFF342OIT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF161NHL bigWig fold change over control ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF134QYH, ENCFF710NTS 336740430 ENCODE Processing Pipeline 22940bbb538b2c8c96931c6f18ae405a https://www.encodeproject.org/files/ENCFF161NHL/@@download/ENCFF161NHL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF657QMO bigWig fold change over control ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF134QYH, ENCFF447POJ, ENCFF710NTS 610817927 ENCODE Processing Pipeline 3b2cff4e944986e602bda81ff69d14b4 https://www.encodeproject.org/files/ENCFF657QMO/@@download/ENCFF657QMO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884GTB bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF319WWO 10822815 ENCODE Processing Pipeline 23d90c3aa5c1a9e861c3d5944c573efa https://www.encodeproject.org/files/ENCFF884GTB/@@download/ENCFF884GTB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF641YZX bed narrowPeak conservative idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF319WWO, ENCFF722BEI, ENCFF913KLO 343079 ENCODE Processing Pipeline 2e1884b2030cacb53500cc2c5b9b11f0 https://www.encodeproject.org/files/ENCFF641YZX/@@download/ENCFF641YZX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF664BGP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF706SJZ 650288 ENCODE Processing Pipeline 86e182900468d2ffbe92f879124c8111 https://www.encodeproject.org/files/ENCFF664BGP/@@download/ENCFF664BGP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF319WWO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF447POJ, ENCFF710NTS 4912704 ENCODE Processing Pipeline 3a6b86cbec7a587932391516e814c285 https://www.encodeproject.org/files/ENCFF319WWO/@@download/ENCFF319WWO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF722BEI bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF134QYH, ENCFF447POJ, ENCFF710NTS 5546849 ENCODE Processing Pipeline 527e75b296d4d1ed2edee4070e99694c https://www.encodeproject.org/files/ENCFF722BEI/@@download/ENCFF722BEI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF913KLO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF134QYH, ENCFF710NTS 4952514 ENCODE Processing Pipeline b06fec22d524fcd17581a927c4a190ca https://www.encodeproject.org/files/ENCFF913KLO/@@download/ENCFF913KLO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF766LSB bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF722BEI 12685782 ENCODE Processing Pipeline 96c25ed9cbe014ab53e7f9e0e89b49d4 https://www.encodeproject.org/files/ENCFF766LSB/@@download/ENCFF766LSB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF587KYY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF641YZX 634085 ENCODE Processing Pipeline 8904162ac7678fa914a75f623ae37cb1 https://www.encodeproject.org/files/ENCFF587KYY/@@download/ENCFF587KYY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF706SJZ bed narrowPeak optimal idr thresholded peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF319WWO, ENCFF722BEI, ENCFF913KLO 354973 ENCODE Processing Pipeline 8b78ea00785bf7a9dc6f64503042fe49 https://www.encodeproject.org/files/ENCFF706SJZ/@@download/ENCFF706SJZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF006EYW bigBed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF913KLO 10814484 ENCODE Processing Pipeline f1b99929ac078a748b1b9cfaced687d6 https://www.encodeproject.org/files/ENCFF006EYW/@@download/ENCFF006EYW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZNA bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZNJ 853942135 Peggy Farnham, USC 8a9b24fdab6ffe87cd323d9608c77067 https://www.encodeproject.org/files/ENCFF000ZNA/@@download/ENCFF000ZNA.bam hg19 /files/ENCFF000VJV/, /files/ENCFF000ZNE/ archived biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZNB bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZNK 731862646 Peggy Farnham, USC 739484855242bfc2fed399d708951f8f https://www.encodeproject.org/files/ENCFF000ZNB/@@download/ENCFF000ZNB.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZNC bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQN 131627 Peggy Farnham, USC 7b38356cbc83c54c18220c9d296de8b3 https://www.encodeproject.org/files/ENCFF000ZNC/@@download/ENCFF000ZNC.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZND bigWig signal ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 347952203 Peggy Farnham, USC 7969a43542633f62a6ece3e342cdce4b https://www.encodeproject.org/files/ENCFF000ZND/@@download/ENCFF000ZND.bigWig hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZNJ fastq reads ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 690221238 Peggy Farnham, USC d3378a201394372c9bc1dededf93e664 https://www.encodeproject.org/files/ENCFF000ZNJ/@@download/ENCFF000ZNJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VJV/ released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZNK fastq reads ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 651480905 Peggy Farnham, USC a400d5768bed5d8afc249187194f0b9e https://www.encodeproject.org/files/ENCFF000ZNK/@@download/ENCFF000ZNK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VJV/ released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF001VQN bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 24615 Peggy Farnham, USC 5ddd43af84db00da35c777070209a449 https://www.encodeproject.org/files/ENCFF001VQN/@@download/ENCFF001VQN.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF002CZR bed narrowPeak optimal idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 70181 ENCODE Consortium Analysis Working Group 2af0fe77853dcb21e8352e43c17f29c0 https://www.encodeproject.org/files/ENCFF002CZR/@@download/ENCFF002CZR.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF962VFR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZR 244882 ENCODE Consortium 255c30a0d20853bf8cbf2a3764ba33fd https://www.encodeproject.org/files/ENCFF962VFR/@@download/ENCFF962VFR.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF248WSS bam unfiltered alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZNK, ENCFF643CGH 733340307 ENCODE Processing Pipeline fecb88e54cd8b73b4a64d7f3a8f8ed81 https://www.encodeproject.org/files/ENCFF248WSS/@@download/ENCFF248WSS.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF721QTD bam unfiltered alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZNJ, ENCFF643CGH 857800860 ENCODE Processing Pipeline 813f18568b7c7ddd3c7b23829a74f9fe https://www.encodeproject.org/files/ENCFF721QTD/@@download/ENCFF721QTD.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF114QPX bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZNK, ENCFF643CGH 204149299 ENCODE Processing Pipeline fe89d3103fceacb222b5535eb4ecc96a https://www.encodeproject.org/files/ENCFF114QPX/@@download/ENCFF114QPX.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF636NTU bam unfiltered alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZNJ, ENCFF807MUK 854444605 ENCODE Processing Pipeline c2edc2e684c05118558a290ab5ae4efb https://www.encodeproject.org/files/ENCFF636NTU/@@download/ENCFF636NTU.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF272YVM bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZNJ, ENCFF643CGH 359917755 ENCODE Processing Pipeline 5460a6564353857129a11f47138e409f https://www.encodeproject.org/files/ENCFF272YVM/@@download/ENCFF272YVM.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF709NTI bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZNK, ENCFF807MUK 204423818 ENCODE Processing Pipeline 52205d9d59856730720f2ed9b6be3bf2 https://www.encodeproject.org/files/ENCFF709NTI/@@download/ENCFF709NTI.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF002ZMT bam unfiltered alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZNK, ENCFF807MUK 732075368 ENCODE Processing Pipeline 121ad3f74a53e9b496455dfcc6d9bbbc https://www.encodeproject.org/files/ENCFF002ZMT/@@download/ENCFF002ZMT.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF928FQV bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZNJ, ENCFF807MUK 360336746 ENCODE Processing Pipeline 5548123d646dd915c57540efecae2b6b https://www.encodeproject.org/files/ENCFF928FQV/@@download/ENCFF928FQV.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF868NZN bigWig signal p-value ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF114QPX, ENCFF293DEQ 534857019 ENCODE Processing Pipeline 942533c456f9a77c4b6df866d593d9cb https://www.encodeproject.org/files/ENCFF868NZN/@@download/ENCFF868NZN.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF806OAZ bigWig signal p-value ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF272YVM, ENCFF293DEQ 608678680 ENCODE Processing Pipeline 0f888fa1d4c561114da554c51d440550 https://www.encodeproject.org/files/ENCFF806OAZ/@@download/ENCFF806OAZ.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF890LFQ bigWig signal p-value ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF928FQV 628006924 ENCODE Processing Pipeline 5c07dfed0819fb23cb9a2ddf88d6d807 https://www.encodeproject.org/files/ENCFF890LFQ/@@download/ENCFF890LFQ.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF396JEG bigWig signal p-value ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114QPX, ENCFF272YVM, ENCFF293DEQ 647996506 ENCODE Processing Pipeline 3b78b4cc1c149b30fec00fe9a5a3e616 https://www.encodeproject.org/files/ENCFF396JEG/@@download/ENCFF396JEG.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF874CML bigWig fold change over control ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF272YVM, ENCFF293DEQ 188121258 ENCODE Processing Pipeline ea53159d4cacaffa24d7c996d28dccc4 https://www.encodeproject.org/files/ENCFF874CML/@@download/ENCFF874CML.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF645UXF bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF272YVM, ENCFF293DEQ 4951380 ENCODE Processing Pipeline 138e34e4cb48f75586328d5f70360edc https://www.encodeproject.org/files/ENCFF645UXF/@@download/ENCFF645UXF.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF233DIA bigWig fold change over control ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114QPX, ENCFF272YVM, ENCFF293DEQ 279650000 ENCODE Processing Pipeline 91d916934f34a3c3110737090a1d9973 https://www.encodeproject.org/files/ENCFF233DIA/@@download/ENCFF233DIA.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF354TKI bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114QPX, ENCFF272YVM, ENCFF293DEQ 6246276 ENCODE Processing Pipeline c9a16b49438434cf2cc14ac7c2a1e4e8 https://www.encodeproject.org/files/ENCFF354TKI/@@download/ENCFF354TKI.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF636SDI bigWig fold change over control ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF114QPX, ENCFF293DEQ 120621608 ENCODE Processing Pipeline 3e050a2adda6b8fc92329d2de3d8855f https://www.encodeproject.org/files/ENCFF636SDI/@@download/ENCFF636SDI.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF240MSW bigWig signal p-value ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF205KMO, ENCFF709NTI 531703589 ENCODE Processing Pipeline 6529af39df0d1751c1e7a48a94d686c0 https://www.encodeproject.org/files/ENCFF240MSW/@@download/ENCFF240MSW.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF062UQM bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF114QPX, ENCFF293DEQ 2763129 ENCODE Processing Pipeline 95d7531c5213b0ba21e4257bfd845276 https://www.encodeproject.org/files/ENCFF062UQM/@@download/ENCFF062UQM.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF901QXJ bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF062UQM 6304538 ENCODE Processing Pipeline eafb09c8f1c49338bc1951c73080dac5 https://www.encodeproject.org/files/ENCFF901QXJ/@@download/ENCFF901QXJ.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF376CLS bed narrowPeak conservative idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF062UQM, ENCFF354TKI, ENCFF419RSJ, ENCFF645UXF 104609 ENCODE Processing Pipeline e56626aa4a1a9eb490656322446058d7 https://www.encodeproject.org/files/ENCFF376CLS/@@download/ENCFF376CLS.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF577FWL bed narrowPeak optimal idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF062UQM, ENCFF354TKI, ENCFF419RSJ, ENCFF645UXF 106464 ENCODE Processing Pipeline 43ff311d2de45b95985ac019a29e5f55 https://www.encodeproject.org/files/ENCFF577FWL/@@download/ENCFF577FWL.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF121MCO bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF645UXF 11628794 ENCODE Processing Pipeline 7f823cd495bbecf8bbf746bf75ddc792 https://www.encodeproject.org/files/ENCFF121MCO/@@download/ENCFF121MCO.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF046KOE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF376CLS 311725 ENCODE Processing Pipeline 3f12cf9209a0c8f16f5e9cb60e6eba69 https://www.encodeproject.org/files/ENCFF046KOE/@@download/ENCFF046KOE.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF521WMB bigWig fold change over control ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF928FQV 187703818 ENCODE Processing Pipeline 041e8fa2e4116b3bb0f43a70934d006e https://www.encodeproject.org/files/ENCFF521WMB/@@download/ENCFF521WMB.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF407HTY bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF354TKI 12880079 ENCODE Processing Pipeline 22ca307218c030461a46584f37a75a64 https://www.encodeproject.org/files/ENCFF407HTY/@@download/ENCFF407HTY.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF641MUM bigWig signal p-value ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF205KMO, ENCFF709NTI, ENCFF928FQV 681984902 ENCODE Processing Pipeline 1e5c2862b645af7b0f6080ae0c997907 https://www.encodeproject.org/files/ENCFF641MUM/@@download/ENCFF641MUM.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF327TNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF577FWL 317266 ENCODE Processing Pipeline e7425af19782764ffb24083fdb0286ae https://www.encodeproject.org/files/ENCFF327TNQ/@@download/ENCFF327TNQ.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF186GYR bigWig fold change over control ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF205KMO, ENCFF709NTI 107957725 ENCODE Processing Pipeline e0b82fb674c33751bd7b59fd4b842693 https://www.encodeproject.org/files/ENCFF186GYR/@@download/ENCFF186GYR.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF685HXK bigWig fold change over control ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF205KMO, ENCFF709NTI, ENCFF928FQV 278188733 ENCODE Processing Pipeline c52862bc8cbcf95ef137fe435c2d693e https://www.encodeproject.org/files/ENCFF685HXK/@@download/ENCFF685HXK.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF259PLY bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF928FQV 4762382 ENCODE Processing Pipeline 3def866451a27f2be8ce01fa5397caa0 https://www.encodeproject.org/files/ENCFF259PLY/@@download/ENCFF259PLY.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF203YKR bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF205KMO, ENCFF709NTI 2689037 ENCODE Processing Pipeline 5fffe610aa44186236fc8d6eecd9581a https://www.encodeproject.org/files/ENCFF203YKR/@@download/ENCFF203YKR.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF354XSO bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF259PLY 11406559 ENCODE Processing Pipeline 2225928fcc7060d0b8b5d56992d096fc https://www.encodeproject.org/files/ENCFF354XSO/@@download/ENCFF354XSO.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF050WYL bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF258BUQ 12867578 ENCODE Processing Pipeline 2bc4d39e81796333102612bc5045ddc2 https://www.encodeproject.org/files/ENCFF050WYL/@@download/ENCFF050WYL.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF258BUQ bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF205KMO, ENCFF709NTI, ENCFF928FQV 6325444 ENCODE Processing Pipeline d4feca8a15000c6907669671502410f5 https://www.encodeproject.org/files/ENCFF258BUQ/@@download/ENCFF258BUQ.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF303AKI bigBed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203YKR 6195634 ENCODE Processing Pipeline 01a699009cf1bf7548fdeaae25703c18 https://www.encodeproject.org/files/ENCFF303AKI/@@download/ENCFF303AKI.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF841RSF bed narrowPeak optimal idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF203YKR, ENCFF258BUQ, ENCFF259PLY 114990 ENCODE Processing Pipeline f775fe62ab6cbe2bfc618f009a319d9b https://www.encodeproject.org/files/ENCFF841RSF/@@download/ENCFF841RSF.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF569TVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF841RSF 328068 ENCODE Processing Pipeline 061a353cbf713fb69247877f6e53d004 https://www.encodeproject.org/files/ENCFF569TVH/@@download/ENCFF569TVH.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000VZO bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 311437096 Kevin Struhl, HMS ffbd704f77cb644d5012301533cd0536 https://www.encodeproject.org/files/ENCFF000VZO/@@download/ENCFF000VZO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VZP bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 1 325623406 Kevin Struhl, HMS c606a5f7c06d6fc5aa8af0496a43336d https://www.encodeproject.org/files/ENCFF000VZP/@@download/ENCFF000VZP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VZQ bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEU 401078 Kevin Struhl, HMS d6511f44d0efc269e602ec627562f96a https://www.encodeproject.org/files/ENCFF000VZQ/@@download/ENCFF000VZQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VZR fastq reads ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 566518137 Kevin Struhl, HMS 5bf596cb8cce31e54b2ae9f76a64d3be https://www.encodeproject.org/files/ENCFF000VZR/@@download/ENCFF000VZR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VZT fastq reads ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 650489676 Kevin Struhl, HMS 62d1807528ace2544dbcef3e53dcd7dd https://www.encodeproject.org/files/ENCFF000VZT/@@download/ENCFF000VZT.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VZV bigWig signal ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 263611090 Kevin Struhl, HMS 795ef630c628b44335eb1bda66fcdd82 https://www.encodeproject.org/files/ENCFF000VZV/@@download/ENCFF000VZV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VEU bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 207036 Kevin Struhl, HMS 4f30e896212a445a0af2f54a09d00bd4 https://www.encodeproject.org/files/ENCFF001VEU/@@download/ENCFF001VEU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPB bed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 48248 ENCODE Consortium Analysis Working Group d951149e467a73e4637f374a626b67bb https://www.encodeproject.org/files/ENCFF002CPB/@@download/ENCFF002CPB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF525IWI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPB 191397 ENCODE Consortium 3d31444575e3871ddcbf2422e5703d0f https://www.encodeproject.org/files/ENCFF525IWI/@@download/ENCFF525IWI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF743AGP bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF643CGH 661485527 ENCODE Processing Pipeline 5c30471390669f9afbc2e71ef7329ad8 https://www.encodeproject.org/files/ENCFF743AGP/@@download/ENCFF743AGP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF280SUM bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF643CGH 370799104 ENCODE Processing Pipeline 6d67d5971bd092e28a788feec29f0b89 https://www.encodeproject.org/files/ENCFF280SUM/@@download/ENCFF280SUM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF693TLQ bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF643CGH 586414652 ENCODE Processing Pipeline be9cc506e3e6da6220e66be5cfa7bef9 https://www.encodeproject.org/files/ENCFF693TLQ/@@download/ENCFF693TLQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595NGV bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF643CGH 391867513 ENCODE Processing Pipeline 2371505050f9222102bd2a8f53ccdeb7 https://www.encodeproject.org/files/ENCFF595NGV/@@download/ENCFF595NGV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF576YMK bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF807MUK 583660100 ENCODE Processing Pipeline 3639415ed79b6abf90e01f51430c34d5 https://www.encodeproject.org/files/ENCFF576YMK/@@download/ENCFF576YMK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282HGE bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF807MUK 371009343 ENCODE Processing Pipeline f33a150ee263cf2e560af55d31d0f140 https://www.encodeproject.org/files/ENCFF282HGE/@@download/ENCFF282HGE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF433HND bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF807MUK 392017313 ENCODE Processing Pipeline b5a089e1a2599747b99ecfac66934ac9 https://www.encodeproject.org/files/ENCFF433HND/@@download/ENCFF433HND.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803BZL bam unfiltered alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF807MUK 657883567 ENCODE Processing Pipeline 0df204a4e23af594ba6567f141ced427 https://www.encodeproject.org/files/ENCFF803BZL/@@download/ENCFF803BZL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF788ZBI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278GJK 91357 ENCODE Processing Pipeline 8206398583006bff362ed106b3091130 https://www.encodeproject.org/files/ENCFF788ZBI/@@download/ENCFF788ZBI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF191QZC bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 175439070 ENCODE Processing Pipeline 508c6daafee8bcf58e9fe80ec8505033 https://www.encodeproject.org/files/ENCFF191QZC/@@download/ENCFF191QZC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169EJC bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF282HGE, ENCFF433HND, ENCFF545DZO 323785654 ENCODE Processing Pipeline abc77796619aa5c8989a05059df26137 https://www.encodeproject.org/files/ENCFF169EJC/@@download/ENCFF169EJC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF333CPM bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 51982 ENCODE Processing Pipeline bc68e65a7b622a6d8503502a6f6859f5 https://www.encodeproject.org/files/ENCFF333CPM/@@download/ENCFF333CPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF423EOR bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 3484431 ENCODE Processing Pipeline 7f0774c94b185ffe04909390f2470dbf https://www.encodeproject.org/files/ENCFF423EOR/@@download/ENCFF423EOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF070MLX bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF333CPM 146297 ENCODE Processing Pipeline c61a396c8e8a3e71ec16255edec69b65 https://www.encodeproject.org/files/ENCFF070MLX/@@download/ENCFF070MLX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF608YCM bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423EOR 7156379 ENCODE Processing Pipeline feff3b16762daea53b9dfeb81f4b13d0 https://www.encodeproject.org/files/ENCFF608YCM/@@download/ENCFF608YCM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF480ZCC bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF063ESL 10190938 ENCODE Processing Pipeline 9405624c4110d03f00c280894ce185cd https://www.encodeproject.org/files/ENCFF480ZCC/@@download/ENCFF480ZCC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF414JLN bed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF063ESL, ENCFF333CPM, ENCFF423EOR 21975 ENCODE Processing Pipeline 151656e4361aa7092b6b3591b2f30ddb https://www.encodeproject.org/files/ENCFF414JLN/@@download/ENCFF414JLN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF988RYW bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF282HGE, ENCFF433HND, ENCFF545DZO 188392469 ENCODE Processing Pipeline 56a641832b2db82d7bdf40a5cf286417 https://www.encodeproject.org/files/ENCFF988RYW/@@download/ENCFF988RYW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF053SPJ bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF280SUM, ENCFF477ZKJ, ENCFF710SMS 175184234 ENCODE Processing Pipeline c09d6e9c4bcce89b9e71dce77a07edb2 https://www.encodeproject.org/files/ENCFF053SPJ/@@download/ENCFF053SPJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381TUR bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF595NGV 148779719 ENCODE Processing Pipeline f59eba24e722ae4edbb8eef7b8d24f03 https://www.encodeproject.org/files/ENCFF381TUR/@@download/ENCFF381TUR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF878TJY bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280SUM, ENCFF477ZKJ, ENCFF595NGV, ENCFF710SMS 323738510 ENCODE Processing Pipeline 0d620e66b060b5a0140b33142f704ea2 https://www.encodeproject.org/files/ENCFF878TJY/@@download/ENCFF878TJY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF961DCG bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF280SUM, ENCFF477ZKJ, ENCFF710SMS 50633 ENCODE Processing Pipeline e7e521317ef08468b4e0f3fd767e0db6 https://www.encodeproject.org/files/ENCFF961DCG/@@download/ENCFF961DCG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF423HZJ bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF961DCG 144469 ENCODE Processing Pipeline e8609432230fa83a827c4c5850e8b162 https://www.encodeproject.org/files/ENCFF423HZJ/@@download/ENCFF423HZJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF470OOI bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF091YJN 7162347 ENCODE Processing Pipeline 648555c507641d62d460906b97f9d929 https://www.encodeproject.org/files/ENCFF470OOI/@@download/ENCFF470OOI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF278GJK bed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF091YJN, ENCFF419RSJ, ENCFF802BPF, ENCFF961DCG 21860 ENCODE Processing Pipeline 6ff434803bec3ea663a04dcdb5e91a2c https://www.encodeproject.org/files/ENCFF278GJK/@@download/ENCFF278GJK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF192AMC bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 188197950 ENCODE Processing Pipeline c34f6c75e3aca65d4d11b4ca2e213543 https://www.encodeproject.org/files/ENCFF192AMC/@@download/ENCFF192AMC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF091YJN bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF595NGV 3486122 ENCODE Processing Pipeline 835d54424a46369a84959f3ce59608e0 https://www.encodeproject.org/files/ENCFF091YJN/@@download/ENCFF091YJN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF099HDY bigBed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF802BPF 10191084 ENCODE Processing Pipeline ba14efaa84afb69252ef2adc3ff72709 https://www.encodeproject.org/files/ENCFF099HDY/@@download/ENCFF099HDY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF261EXW bigWig fold change over control ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 149846340 ENCODE Processing Pipeline 2a56803edc4511b54900100fb030d6b0 https://www.encodeproject.org/files/ENCFF261EXW/@@download/ENCFF261EXW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF063ESL bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF282HGE, ENCFF433HND, ENCFF545DZO 3881522 ENCODE Processing Pipeline 27648d2736c3616b1c025b8685cbb16c https://www.encodeproject.org/files/ENCFF063ESL/@@download/ENCFF063ESL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF213VQG bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 75573348 ENCODE Processing Pipeline 82d238b5649025c3b6e72b72a1d965dd https://www.encodeproject.org/files/ENCFF213VQG/@@download/ENCFF213VQG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF800ZEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF414JLN 91286 ENCODE Processing Pipeline cef43c9b953186c59d08929d53bac5bd https://www.encodeproject.org/files/ENCFF800ZEJ/@@download/ENCFF800ZEJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF005ZID bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF595NGV 86241980 ENCODE Processing Pipeline 0030a0b43651d31b29be2e3c868987ae https://www.encodeproject.org/files/ENCFF005ZID/@@download/ENCFF005ZID.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF501LQT bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280SUM, ENCFF477ZKJ, ENCFF595NGV, ENCFF710SMS 187607931 ENCODE Processing Pipeline ff5769df8347b8f1d83b7b5f3918dacd https://www.encodeproject.org/files/ENCFF501LQT/@@download/ENCFF501LQT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF675HFQ bigWig signal p-value ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF280SUM, ENCFF477ZKJ, ENCFF710SMS 188097483 ENCODE Processing Pipeline 481dc63d4c6cc8bf7014ea243de9353f https://www.encodeproject.org/files/ENCFF675HFQ/@@download/ENCFF675HFQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF802BPF bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280SUM, ENCFF477ZKJ, ENCFF595NGV, ENCFF710SMS 3878173 ENCODE Processing Pipeline e0b49c63c6136e6d28ed805a0fc09003 https://www.encodeproject.org/files/ENCFF802BPF/@@download/ENCFF802BPF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000SCR bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SDG 402388596 Vishwanath Iyer, UTA 5accce939e98c93a055e0fea4ebfa312 https://www.encodeproject.org/files/ENCFF000SCR/@@download/ENCFF000SCR.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF000SCS bigWig base overlap signal ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 930651609 Vishwanath Iyer, UTA 58ab9654d9915d8e9d427d146ef90d9a https://www.encodeproject.org/files/ENCFF000SCS/@@download/ENCFF000SCS.bigWig hg19 released control low read depth, mild to moderate bottlenecking missing derived_from extremely low read depth, missing control alignments ENCFF000SCT bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SDQ 403095305 Vishwanath Iyer, UTA 19d148ee9ed4c31b8ca3a52747f2d2bb https://www.encodeproject.org/files/ENCFF000SCT/@@download/ENCFF000SCT.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF000SCU bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTY 1909845 Vishwanath Iyer, UTA d40e215a07a5882a1305536357b8e805 https://www.encodeproject.org/files/ENCFF000SCU/@@download/ENCFF000SCU.bigBed hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF000SCW bigWig signal ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 3358063992 Vishwanath Iyer, UTA 7163fdc4f482fce1f02ec66aaf01d024 https://www.encodeproject.org/files/ENCFF000SCW/@@download/ENCFF000SCW.bigWig hg19 released control low read depth, mild to moderate bottlenecking missing derived_from extremely low read depth, missing control alignments ENCFF000SDG fastq reads ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 600546049 Vishwanath Iyer, UTA 3946ff549517f15e2d218dabb86cfe82 https://www.encodeproject.org/files/ENCFF000SDG/@@download/ENCFF000SDG.fastq.gz Illumina Genome Analyzer /files/ENCFF000SDU/ released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF000SDQ fastq reads ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 530927444 Vishwanath Iyer, UTA 6cdb620d4fba1203b4edf8d8cbd15558 https://www.encodeproject.org/files/ENCFF000SDQ/@@download/ENCFF000SDQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000SDU/ released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF001UTY bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1163615 Vishwanath Iyer, UTA 3e9e9a4015fdbb07ab56b493fb6a354a https://www.encodeproject.org/files/ENCFF001UTY/@@download/ENCFF001UTY.bed.gz hg19 released control low read depth, mild to moderate bottlenecking missing derived_from extremely low read depth, missing control alignments ENCFF781JQI bam unfiltered alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SDG, ENCFF807MUK 666302857 ENCODE Processing Pipeline 0a253c8c64b7816876db098dec9b9a85 https://www.encodeproject.org/files/ENCFF781JQI/@@download/ENCFF781JQI.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF877UTE bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SDG, ENCFF807MUK 229174550 ENCODE Processing Pipeline 98cb066e7717047fe987bfbcdbb1d62b https://www.encodeproject.org/files/ENCFF877UTE/@@download/ENCFF877UTE.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF018QYS bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SDQ, ENCFF643CGH 223324160 ENCODE Processing Pipeline 8a373b594592388ad36253445e01b028 https://www.encodeproject.org/files/ENCFF018QYS/@@download/ENCFF018QYS.bam GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF911ANI bam unfiltered alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SDQ, ENCFF643CGH 590980190 ENCODE Processing Pipeline 1b71f52e04be376d7235a293731c7675 https://www.encodeproject.org/files/ENCFF911ANI/@@download/ENCFF911ANI.bam GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF305SDG bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SDQ, ENCFF807MUK 223500095 ENCODE Processing Pipeline 0c55c4f69a8607ca8dca502ce1e0daf5 https://www.encodeproject.org/files/ENCFF305SDG/@@download/ENCFF305SDG.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF753GJH bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SDG, ENCFF643CGH 228943158 ENCODE Processing Pipeline 1192407e4535850b65b3a7d3e66939ad https://www.encodeproject.org/files/ENCFF753GJH/@@download/ENCFF753GJH.bam GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF152CJO bam unfiltered alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SDQ, ENCFF807MUK 590275228 ENCODE Processing Pipeline 182b66c6715eabb0a9ff377146d912c4 https://www.encodeproject.org/files/ENCFF152CJO/@@download/ENCFF152CJO.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF379XVD bam unfiltered alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SDG, ENCFF643CGH 667136604 ENCODE Processing Pipeline e0d9c9a7354ce76b170d5d57fd4f0cdf https://www.encodeproject.org/files/ENCFF379XVD/@@download/ENCFF379XVD.bam GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF200JRX bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF427RBA 2930692 ENCODE Processing Pipeline 831ab253b2b78e988765a13e51cef95b https://www.encodeproject.org/files/ENCFF200JRX/@@download/ENCFF200JRX.bigBed hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF867ERM bed narrowPeak optimal idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF329BNL, ENCFF417BGF, ENCFF427RBA 506571 ENCODE Processing Pipeline 5db1c38f26beabf07a70b2a3a8e67817 https://www.encodeproject.org/files/ENCFF867ERM/@@download/ENCFF867ERM.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF388JUC bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF329BNL 2077088 ENCODE Processing Pipeline c0ec550ce5fa6c588f3e0f70d69dcdcc https://www.encodeproject.org/files/ENCFF388JUC/@@download/ENCFF388JUC.bigBed hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF954MWK bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF417BGF 4712920 ENCODE Processing Pipeline e6a273998da1733f63a1f199f6350ee2 https://www.encodeproject.org/files/ENCFF954MWK/@@download/ENCFF954MWK.bigBed hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF741SLO bigWig signal p-value ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF753GJH 203146321 ENCODE Processing Pipeline fd83692294e6edd03443ed842c197d5a https://www.encodeproject.org/files/ENCFF741SLO/@@download/ENCFF741SLO.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF873ERG bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF896NMT 2870772 ENCODE Processing Pipeline 4cc34f86c7767927946442230faa8e23 https://www.encodeproject.org/files/ENCFF873ERG/@@download/ENCFF873ERG.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF060YIT bigWig signal p-value ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF781XST, ENCFF877UTE 222308930 ENCODE Processing Pipeline c894ee3aa449360e8947ba144b6bfc90 https://www.encodeproject.org/files/ENCFF060YIT/@@download/ENCFF060YIT.bigWig hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF150BWH bigWig fold change over control ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF305SDG, ENCFF781XST 63729614 ENCODE Processing Pipeline bcacc1666ebebfc68ceb63bd3717619a https://www.encodeproject.org/files/ENCFF150BWH/@@download/ENCFF150BWH.bigWig hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF989TGR bigBed narrowPeak conservative idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF805RRO 730656 ENCODE Processing Pipeline 4833b1d779a38738b2a313a6285fc916 https://www.encodeproject.org/files/ENCFF989TGR/@@download/ENCFF989TGR.bigBed hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF006JBD bigWig fold change over control ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF305SDG, ENCFF781XST, ENCFF877UTE 114987624 ENCODE Processing Pipeline 7ecf1aa914f10648055fa736a55aa726 https://www.encodeproject.org/files/ENCFF006JBD/@@download/ENCFF006JBD.bigWig hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF329BNL bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF781XST, ENCFF877UTE 1068829 ENCODE Processing Pipeline c2c71e56feccb082ef8ac1070f3896ce https://www.encodeproject.org/files/ENCFF329BNL/@@download/ENCFF329BNL.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF417BGF bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF305SDG, ENCFF781XST, ENCFF877UTE 2205048 ENCODE Processing Pipeline 30f547be203ff464bf995435d399e427 https://www.encodeproject.org/files/ENCFF417BGF/@@download/ENCFF417BGF.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF805RRO bed narrowPeak conservative idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF329BNL, ENCFF417BGF, ENCFF427RBA 441403 ENCODE Processing Pipeline bc336b09ceb08d0aebbf3f595a0a0985 https://www.encodeproject.org/files/ENCFF805RRO/@@download/ENCFF805RRO.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF243BEK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF867ERM 809206 ENCODE Processing Pipeline 857bd7fc4fc9b6c786bc2f38077c48b5 https://www.encodeproject.org/files/ENCFF243BEK/@@download/ENCFF243BEK.bigBed hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF623HQJ bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF753GJH 1074269 ENCODE Processing Pipeline 8007aa0cf4379e333e1c6c8e5b3a8f8e https://www.encodeproject.org/files/ENCFF623HQJ/@@download/ENCFF623HQJ.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF472DGC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF547CLG 732191 ENCODE Processing Pipeline 216a99da3f3627e3debdff85cd9a21da https://www.encodeproject.org/files/ENCFF472DGC/@@download/ENCFF472DGC.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF527YRF bigWig fold change over control ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF781XST, ENCFF877UTE 61317038 ENCODE Processing Pipeline d1b1f0b556230a083b72a8f64e965a19 https://www.encodeproject.org/files/ENCFF527YRF/@@download/ENCFF527YRF.bigWig hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF464GVJ bigWig signal p-value ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF305SDG, ENCFF781XST 198143614 ENCODE Processing Pipeline a5fe32caa7360f45a271c2841e36ec75 https://www.encodeproject.org/files/ENCFF464GVJ/@@download/ENCFF464GVJ.bigWig hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF427RBA bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF305SDG, ENCFF781XST 1343735 ENCODE Processing Pipeline 1bd02cf16715bd189abc6a24d0859a05 https://www.encodeproject.org/files/ENCFF427RBA/@@download/ENCFF427RBA.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF638PDZ bigWig signal p-value ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF305SDG, ENCFF781XST, ENCFF877UTE 215946125 ENCODE Processing Pipeline 0338207bf71db2c5f4721495d5f97a55 https://www.encodeproject.org/files/ENCFF638PDZ/@@download/ENCFF638PDZ.bigWig hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF195LYC bigWig signal p-value ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF018QYS 226969094 ENCODE Processing Pipeline 61c12fd21069141a27f8799358d9ee02 https://www.encodeproject.org/files/ENCFF195LYC/@@download/ENCFF195LYC.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF173NUZ bigWig signal p-value ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF018QYS, ENCFF753GJH 223993179 ENCODE Processing Pipeline a9bd96dd22a6a3ddfacb639392d07a8a https://www.encodeproject.org/files/ENCFF173NUZ/@@download/ENCFF173NUZ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF259EJZ bigWig fold change over control ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF018QYS 62891485 ENCODE Processing Pipeline 6d5555b29f8c4da29fc0ef3c9b5292fb https://www.encodeproject.org/files/ENCFF259EJZ/@@download/ENCFF259EJZ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF587MHE bigWig fold change over control ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF018QYS, ENCFF753GJH 114346346 ENCODE Processing Pipeline 415f240346a00dafd79e9b4288260b71 https://www.encodeproject.org/files/ENCFF587MHE/@@download/ENCFF587MHE.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF070GBH bigWig fold change over control ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF753GJH 60207050 ENCODE Processing Pipeline f4e4c3dfe3051010194f9df928b7cb70 https://www.encodeproject.org/files/ENCFF070GBH/@@download/ENCFF070GBH.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF896NMT bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF018QYS 1323326 ENCODE Processing Pipeline 3b0f4ef01584592435817afb932d62e9 https://www.encodeproject.org/files/ENCFF896NMT/@@download/ENCFF896NMT.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF491YZO bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF018QYS, ENCFF753GJH 2193410 ENCODE Processing Pipeline 92535a1fa18ee6f0a70fda2d172826f8 https://www.encodeproject.org/files/ENCFF491YZO/@@download/ENCFF491YZO.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF547CLG bed narrowPeak conservative idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF491YZO, ENCFF623HQJ, ENCFF896NMT 441876 ENCODE Processing Pipeline 8ed48d09623a31c04856ab2e15822472 https://www.encodeproject.org/files/ENCFF547CLG/@@download/ENCFF547CLG.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF570NKV bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF623HQJ 2092016 ENCODE Processing Pipeline 7cbc1d8d5d6edfe74d7a29167ef4b737 https://www.encodeproject.org/files/ENCFF570NKV/@@download/ENCFF570NKV.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF861NDU bed narrowPeak optimal idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF491YZO, ENCFF623HQJ, ENCFF896NMT 503242 ENCODE Processing Pipeline 250b86d4ed5e1f7de85ef2e062521321 https://www.encodeproject.org/files/ENCFF861NDU/@@download/ENCFF861NDU.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF920ZZK bigBed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF491YZO 4679065 ENCODE Processing Pipeline 5aad2dfccca84532d4e01a4111530166 https://www.encodeproject.org/files/ENCFF920ZZK/@@download/ENCFF920ZZK.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF228QUR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF861NDU 806442 ENCODE Processing Pipeline 5ea43a344617f3efaab2f0e16c6f076f https://www.encodeproject.org/files/ENCFF228QUR/@@download/ENCFF228QUR.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF001HQO bigBed broadPeak hotspots ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRX 3654733 John Stamatoyannopoulos, UW c94f24eb15fcdab51bac270ecb5ceb42 https://www.encodeproject.org/files/ENCFF001HQO/@@download/ENCFF001HQO.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQP bigBed broadPeak hotspots ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XRY 3941882 John Stamatoyannopoulos, UW 97392bc4499a251c0f5af8dca7acf17a https://www.encodeproject.org/files/ENCFF001HQP/@@download/ENCFF001HQP.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQQ bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRZ 1104092 John Stamatoyannopoulos, UW d04f401ab9b3fad04703289f43bff245 https://www.encodeproject.org/files/ENCFF001HQQ/@@download/ENCFF001HQQ.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQR bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSA 1027313 John Stamatoyannopoulos, UW 13bbe2d82d2be8bb8993a57dafd84be2 https://www.encodeproject.org/files/ENCFF001HQR/@@download/ENCFF001HQR.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQS bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRA 908194872 John Stamatoyannopoulos, UW 81d03cbe349b8f6bf59d1004162864c4 https://www.encodeproject.org/files/ENCFF001HQS/@@download/ENCFF001HQS.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQT bigWig raw signal ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQS 172624262 John Stamatoyannopoulos, UW 3ab0e14997d9c655cf9b6088200c29ab https://www.encodeproject.org/files/ENCFF001HQT/@@download/ENCFF001HQT.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQU bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQZ 1078492606 John Stamatoyannopoulos, UW a04c97b1bed5b7b03a016c7ccadca9ca https://www.encodeproject.org/files/ENCFF001HQU/@@download/ENCFF001HQU.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQV bigWig raw signal ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQU 199828096 John Stamatoyannopoulos, UW 17f06c2197d0cc749a31cb1d82b05d96 https://www.encodeproject.org/files/ENCFF001HQV/@@download/ENCFF001HQV.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HQZ fastq reads ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1176633375 John Stamatoyannopoulos, UW 9d8f949095a7a1638c356398b43f782a https://www.encodeproject.org/files/ENCFF001HQZ/@@download/ENCFF001HQZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HRI/ released control low read depth, low read length, low read depth, inconsistent platforms ENCFF001HRA fastq reads ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1000970779 John Stamatoyannopoulos, UW bb9190df196b70a8cc0a8b877cbaf6ac https://www.encodeproject.org/files/ENCFF001HRA/@@download/ENCFF001HRA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HRI/ released control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XRX bed broadPeak hotspots ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQS 2561833 John Stamatoyannopoulos, UW 8d14f4a43856f06e87aa3f47e66931da https://www.encodeproject.org/files/ENCFF001XRX/@@download/ENCFF001XRX.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XRY bed broadPeak hotspots ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQU 2772325 John Stamatoyannopoulos, UW 52322ec413a8a8831fa2ebf2cf06c081 https://www.encodeproject.org/files/ENCFF001XRY/@@download/ENCFF001XRY.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XRZ bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQS 784240 John Stamatoyannopoulos, UW c6e82dd42fd9c9dbdd3d75df1183fbf3 https://www.encodeproject.org/files/ENCFF001XRZ/@@download/ENCFF001XRZ.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XSA bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQU 720827 John Stamatoyannopoulos, UW 4f3ab5ae1b6b2c1fecb823ebb5292428 https://www.encodeproject.org/files/ENCFF001XSA/@@download/ENCFF001XSA.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF002DDE bed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HQS, ENCFF001HQU 1047705 ENCODE Consortium Analysis Working Group 14aa397f7b3c83831889aed668d4fa68 https://www.encodeproject.org/files/ENCFF002DDE/@@download/ENCFF002DDE.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF741NPD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDE 2126384 ENCODE Consortium f03e6472fd9083e10d5dffb72aac2246 https://www.encodeproject.org/files/ENCFF741NPD/@@download/ENCFF741NPD.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF999VRD bam unfiltered alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRA, ENCFF643CGH 1146246733 ENCODE Processing Pipeline 9bfa98ac7f0b0f9cecf8b7994ca3ba1a https://www.encodeproject.org/files/ENCFF999VRD/@@download/ENCFF999VRD.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF327QNZ bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRA, ENCFF643CGH 780347766 ENCODE Processing Pipeline d9e40a8407c03cbb07308e09f3e4cdb7 https://www.encodeproject.org/files/ENCFF327QNZ/@@download/ENCFF327QNZ.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF583TGU bam unfiltered alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQZ, ENCFF643CGH 1368310194 ENCODE Processing Pipeline 7e1ee4a5d11665ce5d5106d77099af44 https://www.encodeproject.org/files/ENCFF583TGU/@@download/ENCFF583TGU.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF696UMD bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQZ, ENCFF643CGH 951481971 ENCODE Processing Pipeline f9996aea7b4c0df3b8fe59638d47188b https://www.encodeproject.org/files/ENCFF696UMD/@@download/ENCFF696UMD.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF496LNY bam unfiltered alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRA, ENCFF807MUK 1141956155 ENCODE Processing Pipeline bcebb9a863bb923896f0ba402ef49866 https://www.encodeproject.org/files/ENCFF496LNY/@@download/ENCFF496LNY.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF501JGN bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRA, ENCFF807MUK 780631540 ENCODE Processing Pipeline 687376ea52b6f12b2fb12c94656916cc https://www.encodeproject.org/files/ENCFF501JGN/@@download/ENCFF501JGN.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF206NCD bam unfiltered alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQZ, ENCFF807MUK 1362277407 ENCODE Processing Pipeline a63b0e8d09de42ea1002eb7a86e83f82 https://www.encodeproject.org/files/ENCFF206NCD/@@download/ENCFF206NCD.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF162OTW bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQZ, ENCFF807MUK 951786844 ENCODE Processing Pipeline d8bb3ca65731d5177ed06dceb28f14e6 https://www.encodeproject.org/files/ENCFF162OTW/@@download/ENCFF162OTW.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF554VCC bigWig signal p-value ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327QNZ, ENCFF741CYK 376521353 ENCODE Processing Pipeline 27c323e0843cdb59623f676793f7df74 https://www.encodeproject.org/files/ENCFF554VCC/@@download/ENCFF554VCC.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF991AHT bigWig signal p-value ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF696UMD, ENCFF741CYK 401722092 ENCODE Processing Pipeline 50000d2c26dadf237bbaeb70e9bb95b0 https://www.encodeproject.org/files/ENCFF991AHT/@@download/ENCFF991AHT.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF663SEO bigWig signal p-value ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF327QNZ, ENCFF696UMD, ENCFF741CYK 393428500 ENCODE Processing Pipeline 18c15222a836ebe61b7e937e290de234 https://www.encodeproject.org/files/ENCFF663SEO/@@download/ENCFF663SEO.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF871ZHI bigWig fold change over control ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327QNZ, ENCFF741CYK 311418386 ENCODE Processing Pipeline da3cfece7242071dcaaf4d4c4de606c2 https://www.encodeproject.org/files/ENCFF871ZHI/@@download/ENCFF871ZHI.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF467IQT bigWig fold change over control ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF696UMD, ENCFF741CYK 366291988 ENCODE Processing Pipeline af40457ea9ff68e3adc33e09e0c267b9 https://www.encodeproject.org/files/ENCFF467IQT/@@download/ENCFF467IQT.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF117BRM bigWig fold change over control ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF327QNZ, ENCFF696UMD, ENCFF741CYK 591157582 ENCODE Processing Pipeline 7ce57d0cffdaf4e72e317d99cdfaa901 https://www.encodeproject.org/files/ENCFF117BRM/@@download/ENCFF117BRM.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF484FSJ bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327QNZ, ENCFF741CYK 4255434 ENCODE Processing Pipeline ee87c3fbff61e02a52a4f6a9cf8093bd https://www.encodeproject.org/files/ENCFF484FSJ/@@download/ENCFF484FSJ.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF523ROB bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF696UMD, ENCFF741CYK 4336533 ENCODE Processing Pipeline 5827fa02b923d7f307a1f043d32c4ec1 https://www.encodeproject.org/files/ENCFF523ROB/@@download/ENCFF523ROB.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF909NRN bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF327QNZ, ENCFF696UMD, ENCFF741CYK 4796649 ENCODE Processing Pipeline f51ec11eb15677585fe50a959f691f20 https://www.encodeproject.org/files/ENCFF909NRN/@@download/ENCFF909NRN.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF405GGX bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF484FSJ 10654923 ENCODE Processing Pipeline 47fa4182789ff17c15e09fa87b565306 https://www.encodeproject.org/files/ENCFF405GGX/@@download/ENCFF405GGX.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF409HAF bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF523ROB 10883136 ENCODE Processing Pipeline 42d6bb8543f5c92d1d30e6685511ca72 https://www.encodeproject.org/files/ENCFF409HAF/@@download/ENCFF409HAF.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF984UOK bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF909NRN 11525225 ENCODE Processing Pipeline 38e33c85d8a988edc52657f4792caa76 https://www.encodeproject.org/files/ENCFF984UOK/@@download/ENCFF984UOK.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF777ODE bed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF484FSJ, ENCFF523ROB, ENCFF909NRN 764061 ENCODE Processing Pipeline 325603dfc60c0749af80c8a6366daad9 https://www.encodeproject.org/files/ENCFF777ODE/@@download/ENCFF777ODE.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF342DRV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF777ODE 1377877 ENCODE Processing Pipeline 3d28fd763a0b2254e663ebacb2b01a99 https://www.encodeproject.org/files/ENCFF342DRV/@@download/ENCFF342DRV.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF134LFE bigWig signal p-value ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF138KCG, ENCFF501JGN 376734621 ENCODE Processing Pipeline a9b89bb97e163b355d03f18b8fc82138 https://www.encodeproject.org/files/ENCFF134LFE/@@download/ENCFF134LFE.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF198AAZ bigWig signal p-value ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF138KCG, ENCFF162OTW 401980406 ENCODE Processing Pipeline 32d330f7bca014309db573f5d5b060f7 https://www.encodeproject.org/files/ENCFF198AAZ/@@download/ENCFF198AAZ.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF133QIG bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF519REF 11520808 ENCODE Processing Pipeline d4559873d6cab35b7d27377427e5dd65 https://www.encodeproject.org/files/ENCFF133QIG/@@download/ENCFF133QIG.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF050BXB bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF129FBO 10888808 ENCODE Processing Pipeline f9a11299ae8408eea28cac7db9b7b45f https://www.encodeproject.org/files/ENCFF050BXB/@@download/ENCFF050BXB.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF213JJM bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF138KCG, ENCFF501JGN 4259970 ENCODE Processing Pipeline b164abad0ce02171120a2a3e0b3e4963 https://www.encodeproject.org/files/ENCFF213JJM/@@download/ENCFF213JJM.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF129FBO bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF138KCG, ENCFF162OTW 4341715 ENCODE Processing Pipeline e0e094e56cd99e7dd5ecfd67f77b2ffd https://www.encodeproject.org/files/ENCFF129FBO/@@download/ENCFF129FBO.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF519REF bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF138KCG, ENCFF162OTW, ENCFF501JGN 4798962 ENCODE Processing Pipeline 8be57cdccfe3469cfda34126dd9ebb02 https://www.encodeproject.org/files/ENCFF519REF/@@download/ENCFF519REF.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF291FVK bigBed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF213JJM 10658272 ENCODE Processing Pipeline 48b48b5e012b0bfbdc6d8fff2fac9a93 https://www.encodeproject.org/files/ENCFF291FVK/@@download/ENCFF291FVK.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF570FLB bed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF129FBO, ENCFF213JJM, ENCFF519REF 763178 ENCODE Processing Pipeline 86c192815799a1a048cd599e0a046fe5 https://www.encodeproject.org/files/ENCFF570FLB/@@download/ENCFF570FLB.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF290SUL bigWig fold change over control ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF138KCG, ENCFF501JGN 311714162 ENCODE Processing Pipeline 97227dabaae51f5369dec638ff42f815 https://www.encodeproject.org/files/ENCFF290SUL/@@download/ENCFF290SUL.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF741PYM bigWig signal p-value ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF138KCG, ENCFF162OTW, ENCFF501JGN 392923340 ENCODE Processing Pipeline b3c44bc7728cd485c302f6ec5290ec6c https://www.encodeproject.org/files/ENCFF741PYM/@@download/ENCFF741PYM.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF681TXG bigWig fold change over control ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF138KCG, ENCFF162OTW 366634351 ENCODE Processing Pipeline 34063dd39b823f519e0e4187bad2f34e https://www.encodeproject.org/files/ENCFF681TXG/@@download/ENCFF681TXG.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF073GBS bigWig fold change over control ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF138KCG, ENCFF162OTW, ENCFF501JGN 591233806 ENCODE Processing Pipeline ada831b6fa17fa5025532a51b471370a https://www.encodeproject.org/files/ENCFF073GBS/@@download/ENCFF073GBS.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF305YLV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF570FLB 1376071 ENCODE Processing Pipeline a9eb12c8e6765f0151568f9245828a1b https://www.encodeproject.org/files/ENCFF305YLV/@@download/ENCFF305YLV.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF000PFE bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PFQ 914630742 Richard Myers, HAIB 85bb27c102086c9fd6a228c77d00a4b5 https://www.encodeproject.org/files/ENCFF000PFE/@@download/ENCFF000PFE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PFF bigBed broadPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFE 112803 Richard Myers, HAIB 2ed6a98060494e6328a20813ba856f12 https://www.encodeproject.org/files/ENCFF000PFF/@@download/ENCFF000PFF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PFG bigBed broadPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFF 70395 Richard Myers, HAIB 46c54fdc6cf1bc4d2cf9552d8829618b https://www.encodeproject.org/files/ENCFF000PFG/@@download/ENCFF000PFG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PFH bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PFR 987000241 Richard Myers, HAIB a437ba955d4fe17e87effb395f232121 https://www.encodeproject.org/files/ENCFF000PFH/@@download/ENCFF000PFH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PFI bigWig raw signal ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 10590185 Richard Myers, HAIB b490cabd07ed064d50731f68f99ae70e https://www.encodeproject.org/files/ENCFF000PFI/@@download/ENCFF000PFI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PFK bigWig raw signal ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 4501816 Richard Myers, HAIB 8475e51562ed8208d3ac4d5f82e028f3 https://www.encodeproject.org/files/ENCFF000PFK/@@download/ENCFF000PFK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000PFQ fastq reads ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 829291500 Richard Myers, HAIB 68f04d34cd7f9e6178652f5ef9faaa12 https://www.encodeproject.org/files/ENCFF000PFQ/@@download/ENCFF000PFQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PFR fastq reads ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 828923243 Richard Myers, HAIB bfeb6431e7a44af4b11da6b52d628f5e https://www.encodeproject.org/files/ENCFF000PFR/@@download/ENCFF000PFR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UFE bed broadPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 47706 Richard Myers, HAIB b5219d8cfc05b6ae86925a4833fac303 https://www.encodeproject.org/files/ENCFF001UFE/@@download/ENCFF001UFE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001UFF bed broadPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 16373 Richard Myers, HAIB 03c9b9fa87f6fb913e2655557193e9d7 https://www.encodeproject.org/files/ENCFF001UFF/@@download/ENCFF001UFF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CKB bed narrowPeak optimal idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 83386 ENCODE Consortium Analysis Working Group 8db7f95c02a98255bad497b3abcab3d2 https://www.encodeproject.org/files/ENCFF002CKB/@@download/ENCFF002CKB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF142PTR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKB 230595 ENCODE Consortium 575d25b157229c029aa8e55559bc3ae0 https://www.encodeproject.org/files/ENCFF142PTR/@@download/ENCFF142PTR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF471RBZ bam unfiltered alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFQ, ENCFF643CGH 1110920075 ENCODE Processing Pipeline 74cd4b3e4823172ee3efe1981b1cd7b5 https://www.encodeproject.org/files/ENCFF471RBZ/@@download/ENCFF471RBZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF911WGI bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFQ, ENCFF643CGH 562771764 ENCODE Processing Pipeline 4b651f52f119b30d33940d9d1224dad7 https://www.encodeproject.org/files/ENCFF911WGI/@@download/ENCFF911WGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF511CYT bam unfiltered alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFR, ENCFF643CGH 1198387451 ENCODE Processing Pipeline 4f355d71fce85cf6c50223ce8347a986 https://www.encodeproject.org/files/ENCFF511CYT/@@download/ENCFF511CYT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF357WAY bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFR, ENCFF643CGH 768642692 ENCODE Processing Pipeline 4a0cf377d30c9b90bdd5c2568929a35e https://www.encodeproject.org/files/ENCFF357WAY/@@download/ENCFF357WAY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF767KYS bam unfiltered alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFQ, ENCFF807MUK 1106034622 ENCODE Processing Pipeline d501ccb0e81a74237f8f1dea639232bb https://www.encodeproject.org/files/ENCFF767KYS/@@download/ENCFF767KYS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF847HLX bam unfiltered alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFR, ENCFF807MUK 1193332226 ENCODE Processing Pipeline 8bb87935d573b7a59f3e65cd3ca1d195 https://www.encodeproject.org/files/ENCFF847HLX/@@download/ENCFF847HLX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF081GVK bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFR, ENCFF807MUK 768923803 ENCODE Processing Pipeline d4f98d7bea55ad5423605f02a12991ee https://www.encodeproject.org/files/ENCFF081GVK/@@download/ENCFF081GVK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF906RQV bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFQ, ENCFF807MUK 563089241 ENCODE Processing Pipeline e5ec87ad5e45fd477bb067b947dee0fa https://www.encodeproject.org/files/ENCFF906RQV/@@download/ENCFF906RQV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF202LXJ bigWig signal p-value ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF911WGI, ENCFF943DZB 605161689 ENCODE Processing Pipeline ad955879b381f4e59750587ac6d91dab https://www.encodeproject.org/files/ENCFF202LXJ/@@download/ENCFF202LXJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF115JHP bigWig signal p-value ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF357WAY, ENCFF943DZB 574752179 ENCODE Processing Pipeline 9bec8151b4781cee762ab487668a4a69 https://www.encodeproject.org/files/ENCFF115JHP/@@download/ENCFF115JHP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF886OFY bigWig signal p-value ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF357WAY, ENCFF911WGI, ENCFF943DZB 956214552 ENCODE Processing Pipeline a795199db3d8cc32bbb7753a3d04c533 https://www.encodeproject.org/files/ENCFF886OFY/@@download/ENCFF886OFY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF691DUF bigWig fold change over control ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF357WAY, ENCFF943DZB 578103208 ENCODE Processing Pipeline d104772ea1476e49114954fa995954e6 https://www.encodeproject.org/files/ENCFF691DUF/@@download/ENCFF691DUF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF047ANU bigWig fold change over control ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF911WGI, ENCFF943DZB 380579070 ENCODE Processing Pipeline 22d95cf34bc2983da8c7537355130651 https://www.encodeproject.org/files/ENCFF047ANU/@@download/ENCFF047ANU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF461IPU bigWig fold change over control ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF357WAY, ENCFF911WGI, ENCFF943DZB 820269807 ENCODE Processing Pipeline 0e1fae8449794b5b176edd1dcdf21aae https://www.encodeproject.org/files/ENCFF461IPU/@@download/ENCFF461IPU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF480GLV bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF357WAY, ENCFF911WGI, ENCFF943DZB 5243756 ENCODE Processing Pipeline c8c7d7171a3b420bcd86ec4b8bbde40c https://www.encodeproject.org/files/ENCFF480GLV/@@download/ENCFF480GLV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF198OWC bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF357WAY, ENCFF943DZB 4377812 ENCODE Processing Pipeline e69f9f02419db26cd607247066d260ab https://www.encodeproject.org/files/ENCFF198OWC/@@download/ENCFF198OWC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF743QEP bigBed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF012VKK 10876043 ENCODE Processing Pipeline b460fa1feed2b9494d5e786fa0ead8c2 https://www.encodeproject.org/files/ENCFF743QEP/@@download/ENCFF743QEP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF279ZSC bigBed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF480GLV 11509354 ENCODE Processing Pipeline b7c3f93247048853eb5520758d028555 https://www.encodeproject.org/files/ENCFF279ZSC/@@download/ENCFF279ZSC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF012VKK bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF911WGI, ENCFF943DZB 4528201 ENCODE Processing Pipeline e74560a2d7adccea28af9ae13ce57407 https://www.encodeproject.org/files/ENCFF012VKK/@@download/ENCFF012VKK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF326VNY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF416CBR 162377 ENCODE Processing Pipeline 9f45846852511d69e773fab02800368d https://www.encodeproject.org/files/ENCFF326VNY/@@download/ENCFF326VNY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF137OEY bed narrowPeak optimal idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012VKK, ENCFF198OWC, ENCFF419RSJ, ENCFF480GLV 72742 ENCODE Processing Pipeline 20f5ad2e9a530a364078ef77d3b742ac https://www.encodeproject.org/files/ENCFF137OEY/@@download/ENCFF137OEY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF753WNT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF137OEY 184629 ENCODE Processing Pipeline 454c736808105bc88113c118fe55f427 https://www.encodeproject.org/files/ENCFF753WNT/@@download/ENCFF753WNT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF416CBR bed narrowPeak conservative idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012VKK, ENCFF198OWC, ENCFF419RSJ, ENCFF480GLV 56959 ENCODE Processing Pipeline af2d6c6094e25c79cff48771630f8d85 https://www.encodeproject.org/files/ENCFF416CBR/@@download/ENCFF416CBR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF764YXF bigBed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF198OWC 10835386 ENCODE Processing Pipeline e9490a016cd7406d55b65d4afb6d01e6 https://www.encodeproject.org/files/ENCFF764YXF/@@download/ENCFF764YXF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF595XJR bigWig signal p-value ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 565209072 ENCODE Processing Pipeline 22ffc2cb2e5bf79e920d6631061d0207 https://www.encodeproject.org/files/ENCFF595XJR/@@download/ENCFF595XJR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF857XWV bigWig signal p-value ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT 681309020 ENCODE Processing Pipeline 13f49724e8697cdaf7ff828a586abd3d https://www.encodeproject.org/files/ENCFF857XWV/@@download/ENCFF857XWV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF712DOG bigWig signal p-value ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 790893506 ENCODE Processing Pipeline daf412c7c4cd10ed2af9a406fa2cd1e8 https://www.encodeproject.org/files/ENCFF712DOG/@@download/ENCFF712DOG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF489XNA bigWig fold change over control ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 380484685 ENCODE Processing Pipeline 84acc9b01932de66fd6b633c0f95506c https://www.encodeproject.org/files/ENCFF489XNA/@@download/ENCFF489XNA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF044VQF bigWig fold change over control ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT 586049217 ENCODE Processing Pipeline 5db86b61fd6aeae951f08778c34d6c4a https://www.encodeproject.org/files/ENCFF044VQF/@@download/ENCFF044VQF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF908DFH bigBed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414JVR 10839960 ENCODE Processing Pipeline e76230c08d24fe04576d833eb85f68a7 https://www.encodeproject.org/files/ENCFF908DFH/@@download/ENCFF908DFH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF454GXL bigBed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF725ZKM 11506603 ENCODE Processing Pipeline 29b7627a97a31f3d6a5f182187ed3a35 https://www.encodeproject.org/files/ENCFF454GXL/@@download/ENCFF454GXL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF861JFK bigWig fold change over control ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 826803782 ENCODE Processing Pipeline d6b2254e6339615887281f05d6e9801b https://www.encodeproject.org/files/ENCFF861JFK/@@download/ENCFF861JFK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF414JVR bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT 4384725 ENCODE Processing Pipeline 18fe1deb7a669f58ae85617cf18aa232 https://www.encodeproject.org/files/ENCFF414JVR/@@download/ENCFF414JVR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF725ZKM bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 5245191 ENCODE Processing Pipeline 82285f3a2337fad3dd2948c938455ce3 https://www.encodeproject.org/files/ENCFF725ZKM/@@download/ENCFF725ZKM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF015XMO bed narrowPeak conservative idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF291WLP, ENCFF414JVR, ENCFF725ZKM 56713 ENCODE Processing Pipeline c2a1468b95c235dd54e4532a8a91d1d7 https://www.encodeproject.org/files/ENCFF015XMO/@@download/ENCFF015XMO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF981CRZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015XMO 161625 ENCODE Processing Pipeline 5af5874d5d046012e3939c6ecdeb881d https://www.encodeproject.org/files/ENCFF981CRZ/@@download/ENCFF981CRZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF857YVK bed narrowPeak optimal idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF291WLP, ENCFF414JVR, ENCFF725ZKM 73270 ENCODE Processing Pipeline 9b4d7d6214441c243d20fe05b2418338 https://www.encodeproject.org/files/ENCFF857YVK/@@download/ENCFF857YVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF736ETX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF857YVK 185013 ENCODE Processing Pipeline 5f62487fd27b8885a5ef3d108569af9c https://www.encodeproject.org/files/ENCFF736ETX/@@download/ENCFF736ETX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF099WJB bigBed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291WLP 10828180 ENCODE Processing Pipeline dc8d96ae2c33780cb54023d1ebf525fd https://www.encodeproject.org/files/ENCFF099WJB/@@download/ENCFF099WJB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF291WLP bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 4513802 ENCODE Processing Pipeline 8617fa61d30c6d6d4cd9fdb8a1ebc790 https://www.encodeproject.org/files/ENCFF291WLP/@@download/ENCFF291WLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QLX bam alignments ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QMJ 1419615679 Richard Myers, HAIB e8ca4323152733cdfd573b310bf2fc8b https://www.encodeproject.org/files/ENCFF000QLX/@@download/ENCFF000QLX.bam hg19 released biological replicates with identical biosample ENCFF000QLY bigBed broadPeak peaks ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMP 390505 Richard Myers, HAIB 70b7d7d04873b3a994e326f7c509635b https://www.encodeproject.org/files/ENCFF000QLY/@@download/ENCFF000QLY.bigBed hg19 released biological replicates with identical biosample ENCFF000QLZ bigBed broadPeak peaks ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMQ 335126 Richard Myers, HAIB 10cf1ceff7ae1489c20beb3c7d4ca237 https://www.encodeproject.org/files/ENCFF000QLZ/@@download/ENCFF000QLZ.bigBed hg19 released biological replicates with identical biosample ENCFF000QMA bam alignments ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMK 902365118 Richard Myers, HAIB aa200d1678fa678e741adb5cf7e61ee8 https://www.encodeproject.org/files/ENCFF000QMA/@@download/ENCFF000QMA.bam hg19 released biological replicates with identical biosample ENCFF000QMB bigWig raw signal ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 184931676 Richard Myers, HAIB baa540154fcc8844594012f9406a5f16 https://www.encodeproject.org/files/ENCFF000QMB/@@download/ENCFF000QMB.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QMD bigWig raw signal ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 111264112 Richard Myers, HAIB 407a4bb564d0d27630156dd38996929f https://www.encodeproject.org/files/ENCFF000QMD/@@download/ENCFF000QMD.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QMJ fastq reads ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1464942332 Richard Myers, HAIB dd6296be6c1ca4c495e661a0db5ff7af https://www.encodeproject.org/files/ENCFF000QMJ/@@download/ENCFF000QMJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF000QMK fastq reads ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 916301108 Richard Myers, HAIB a38e36e8639d71eb3d00bad9c85c0494 https://www.encodeproject.org/files/ENCFF000QMK/@@download/ENCFF000QMK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMP bed broadPeak peaks ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 215207 Richard Myers, HAIB f8a551e72cc1c3fd9ede9e31c22af0aa https://www.encodeproject.org/files/ENCFF001UMP/@@download/ENCFF001UMP.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UMQ bed broadPeak peaks ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 168748 Richard Myers, HAIB 8bc2e2996f725b96984d083a09012196 https://www.encodeproject.org/files/ENCFF001UMQ/@@download/ENCFF001UMQ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XXN bam alignments ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYE 161264137 Michael Snyder, Stanford c38aecf5f76a2f89cbd6ba5a5cab9c3c https://www.encodeproject.org/files/ENCFF000XXN/@@download/ENCFF000XXN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXO bam alignments ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYB 126667521 Michael Snyder, Stanford 3bdabcdcaf46636d74658f625eb05697 https://www.encodeproject.org/files/ENCFF000XXO/@@download/ENCFF000XXO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXP bam alignments ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XYA 124598957 Michael Snyder, Stanford 720e8cdcc59742144972dd5a89c8d5da https://www.encodeproject.org/files/ENCFF000XXP/@@download/ENCFF000XXP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXQ bigBed narrowPeak peaks ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKZ 93750 Michael Snyder, Stanford 0df5372435a5f02a74fec4842a306eba https://www.encodeproject.org/files/ENCFF000XXQ/@@download/ENCFF000XXQ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXR bigWig signal ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 267807650 Michael Snyder, Stanford a04801ef6ab609d407e5f8d9eb4a3916 https://www.encodeproject.org/files/ENCFF000XXR/@@download/ENCFF000XXR.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XYA fastq reads ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 92763760 Michael Snyder, Stanford c0cddb7706454ea3119a50492c47a3a0 https://www.encodeproject.org/files/ENCFF000XYA/@@download/ENCFF000XYA.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XYB fastq reads ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 94720921 Michael Snyder, Stanford f065e6b2f33f4dcc4af16aa8947f6d8b https://www.encodeproject.org/files/ENCFF000XYB/@@download/ENCFF000XYB.fastq.gz Illumina Genome Analyzer /files/ENCFF000XRH/ released biological replicates with identical biosample insufficient read length ENCFF000XYE fastq reads ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 120281886 Michael Snyder, Stanford ae46ee4dc3fdd388825f82525f5c9f19 https://www.encodeproject.org/files/ENCFF000XYE/@@download/ENCFF000XYE.fastq.gz Illumina Genome Analyzer /files/ENCFF000XRI/ released biological replicates with identical biosample insufficient read length ENCFF001VKZ bed narrowPeak peaks ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 16196 Michael Snyder, Stanford fb1ad30ee464cd4af75f31d17407de4a https://www.encodeproject.org/files/ENCFF001VKZ/@@download/ENCFF001VKZ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CUV bed narrowPeak optimal idr thresholded peaks ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 69298 ENCODE Consortium Analysis Working Group 1ce43dcd4aef03944a74077ca1acebe5 https://www.encodeproject.org/files/ENCFF002CUV/@@download/ENCFF002CUV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF898SUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUV 267446 ENCODE Consortium 84a0ad2712093a2ba34df2315407f90a https://www.encodeproject.org/files/ENCFF898SUS/@@download/ENCFF898SUS.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000OPV bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OQA 505133530 Richard Myers, HAIB eb7fe5aea09900c311dd52477868f715 https://www.encodeproject.org/files/ENCFF000OPV/@@download/ENCFF000OPV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OPW bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OQM 1341718019 Richard Myers, HAIB 8349fa251c36cf29352c5f9753ec6e2a https://www.encodeproject.org/files/ENCFF000OPW/@@download/ENCFF000OPW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OPX bigBed broadPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBQ 151119 Richard Myers, HAIB 00f9afa6014693426d82dbe77a79c6da https://www.encodeproject.org/files/ENCFF000OPX/@@download/ENCFF000OPX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OPY bigBed broadPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBR 363003 Richard Myers, HAIB 395ee8576a996d2c6f5a948182d02075 https://www.encodeproject.org/files/ENCFF000OPY/@@download/ENCFF000OPY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OQA fastq reads ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 406987405 Richard Myers, HAIB 12446ce8f52c7c09feaac27df2a62d03 https://www.encodeproject.org/files/ENCFF000OQA/@@download/ENCFF000OQA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OQB bigWig raw signal ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 1 2160379 Richard Myers, HAIB 2c996e802b074c78adb830a3b22cab9e https://www.encodeproject.org/files/ENCFF000OQB/@@download/ENCFF000OQB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OQC bigWig raw signal ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 1 52816958 Richard Myers, HAIB f9ca910af5478f1281a526b5c5754837 https://www.encodeproject.org/files/ENCFF000OQC/@@download/ENCFF000OQC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OQM fastq reads ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1978546398 Richard Myers, HAIB 9c2e400bedccce4ffab347623500b3d4 https://www.encodeproject.org/files/ENCFF000OQM/@@download/ENCFF000OQM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UBQ bed broadPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 1 75298 Richard Myers, HAIB 35d56c1f3266cb11c02f324939f3bdfc https://www.encodeproject.org/files/ENCFF001UBQ/@@download/ENCFF001UBQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UBR bed broadPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 1 212860 Richard Myers, HAIB 17bdba13c874c419de734083000ff7cf https://www.encodeproject.org/files/ENCFF001UBR/@@download/ENCFF001UBR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CJA bed narrowPeak optimal idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 108870 ENCODE Consortium Analysis Working Group 85375df67cc6902a9b09a7f7537c81f4 https://www.encodeproject.org/files/ENCFF002CJA/@@download/ENCFF002CJA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF072TVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJA 244688 ENCODE Consortium 3de0d78155479f4c65c055e7dc0d29ac https://www.encodeproject.org/files/ENCFF072TVJ/@@download/ENCFF072TVJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF691GHU bam unfiltered alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQA, ENCFF643CGH 577401033 ENCODE Processing Pipeline 2c03af06111de723dd1b72c658229f0f https://www.encodeproject.org/files/ENCFF691GHU/@@download/ENCFF691GHU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF805SCJ bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQA, ENCFF643CGH 384671859 ENCODE Processing Pipeline 873c690d546fc5e6c2e3950288bfc164 https://www.encodeproject.org/files/ENCFF805SCJ/@@download/ENCFF805SCJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF915EXK bam unfiltered alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQM, ENCFF643CGH 2141750846 ENCODE Processing Pipeline 422be47c6450a51581ac8d305a072ac6 https://www.encodeproject.org/files/ENCFF915EXK/@@download/ENCFF915EXK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF309DIF bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQM, ENCFF643CGH 342050881 ENCODE Processing Pipeline 87b12168549ed3ccb174cc8588916a73 https://www.encodeproject.org/files/ENCFF309DIF/@@download/ENCFF309DIF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF015LGN bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQA, ENCFF807MUK 384999991 ENCODE Processing Pipeline 8bd0c34d671299bf275482a2fbd2ac24 https://www.encodeproject.org/files/ENCFF015LGN/@@download/ENCFF015LGN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF787ANY bam unfiltered alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQA, ENCFF807MUK 575591395 ENCODE Processing Pipeline 4fafa45575dd549894377304489549b9 https://www.encodeproject.org/files/ENCFF787ANY/@@download/ENCFF787ANY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF184OIJ bam unfiltered alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQM, ENCFF807MUK 2138836649 ENCODE Processing Pipeline ff7ea745a903d3bbcd622e0a67115ff8 https://www.encodeproject.org/files/ENCFF184OIJ/@@download/ENCFF184OIJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF909PBK bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQM, ENCFF807MUK 342472928 ENCODE Processing Pipeline d48d8ecaac7edb582298e4006f04f0cb https://www.encodeproject.org/files/ENCFF909PBK/@@download/ENCFF909PBK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF253DOB bigWig signal p-value ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF309DIF, ENCFF805SCJ, ENCFF948LKH 547178497 ENCODE Processing Pipeline 29b53414b7ed33f07cce9c1399207962 https://www.encodeproject.org/files/ENCFF253DOB/@@download/ENCFF253DOB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF039GQK bigWig signal p-value ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF805SCJ, ENCFF948LKH 459306934 ENCODE Processing Pipeline 1b5e531b9329369e45d8e5a1d79360d2 https://www.encodeproject.org/files/ENCFF039GQK/@@download/ENCFF039GQK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF222JAV bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF805SCJ, ENCFF948LKH 3537354 ENCODE Processing Pipeline f9b033b0137c0c965ac8962b62e6f737 https://www.encodeproject.org/files/ENCFF222JAV/@@download/ENCFF222JAV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF300PIT bigWig signal p-value ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF309DIF, ENCFF948LKH 369396271 ENCODE Processing Pipeline e974c948132b87e351d26502e5289ba3 https://www.encodeproject.org/files/ENCFF300PIT/@@download/ENCFF300PIT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF479ERO bigWig fold change over control ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF805SCJ, ENCFF948LKH 229604772 ENCODE Processing Pipeline 803b284f8ccbfa505b432cf9b0329ae6 https://www.encodeproject.org/files/ENCFF479ERO/@@download/ENCFF479ERO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF164RER bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF309DIF, ENCFF948LKH 4111221 ENCODE Processing Pipeline 17963df70b24c3baf43341ec0e62869d https://www.encodeproject.org/files/ENCFF164RER/@@download/ENCFF164RER.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF100JPR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF722JFZ 181959 ENCODE Processing Pipeline 3609d0751d69b697125b4377e48ddfb2 https://www.encodeproject.org/files/ENCFF100JPR/@@download/ENCFF100JPR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF884GXB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF794GVQ 290043 ENCODE Processing Pipeline a6e9a52c2237d434aeba6e68fc6ca4e5 https://www.encodeproject.org/files/ENCFF884GXB/@@download/ENCFF884GXB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF305LHR bigWig fold change over control ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF309DIF, ENCFF805SCJ, ENCFF948LKH 370513374 ENCODE Processing Pipeline 7f7563f134a8bd8749694dad532a100a https://www.encodeproject.org/files/ENCFF305LHR/@@download/ENCFF305LHR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF083BVI bigBed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF222JAV 7509353 ENCODE Processing Pipeline 64181e366229f9156620b2a52d91fb8d https://www.encodeproject.org/files/ENCFF083BVI/@@download/ENCFF083BVI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF022BJX bigBed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF164RER 10010855 ENCODE Processing Pipeline f99f30c79bd250ebb4eab5a66eda4705 https://www.encodeproject.org/files/ENCFF022BJX/@@download/ENCFF022BJX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF082LGX bigWig fold change over control ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF309DIF, ENCFF948LKH 175845515 ENCODE Processing Pipeline 3b83b90bf4467fef0f3a832373bb17be https://www.encodeproject.org/files/ENCFF082LGX/@@download/ENCFF082LGX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF355IFS bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF309DIF, ENCFF805SCJ, ENCFF948LKH 4798788 ENCODE Processing Pipeline 55adbb8213b899dba930ba4d4ab26316 https://www.encodeproject.org/files/ENCFF355IFS/@@download/ENCFF355IFS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF134VMH bigBed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF355IFS 11019870 ENCODE Processing Pipeline d61082d5868a0ffffec005750f1671ca https://www.encodeproject.org/files/ENCFF134VMH/@@download/ENCFF134VMH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF722JFZ bed narrowPeak conservative idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF164RER, ENCFF222JAV, ENCFF355IFS, ENCFF419RSJ 91365 ENCODE Processing Pipeline 672be7cd2a45d4a677dbe6d1a3822ea9 https://www.encodeproject.org/files/ENCFF722JFZ/@@download/ENCFF722JFZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF794GVQ bed narrowPeak optimal idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF164RER, ENCFF222JAV, ENCFF355IFS, ENCFF419RSJ 139159 ENCODE Processing Pipeline 7d86f995b39984be80c7f701ba3f671e https://www.encodeproject.org/files/ENCFF794GVQ/@@download/ENCFF794GVQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF003PUK bigWig signal p-value ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LGN, ENCFF356DXM 379071357 ENCODE Processing Pipeline cfaf489ab7c3937bca251f030965ddbd https://www.encodeproject.org/files/ENCFF003PUK/@@download/ENCFF003PUK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF434QYU bigWig fold change over control ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LGN, ENCFF356DXM 229628373 ENCODE Processing Pipeline 4921f38112420d62a25959f5677cecf9 https://www.encodeproject.org/files/ENCFF434QYU/@@download/ENCFF434QYU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF094PYS bigWig signal p-value ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF909PBK 352632305 ENCODE Processing Pipeline 22c3e73ad091549d78cf6a874e4a4bbe https://www.encodeproject.org/files/ENCFF094PYS/@@download/ENCFF094PYS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF595TRB bigWig fold change over control ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF909PBK 176739658 ENCODE Processing Pipeline 859332900a4744a06a62927bfa781181 https://www.encodeproject.org/files/ENCFF595TRB/@@download/ENCFF595TRB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF965PMN bigWig signal p-value ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015LGN, ENCFF356DXM, ENCFF909PBK 450373130 ENCODE Processing Pipeline 2b367dba08ef8270f3aa81074ebc6ebf https://www.encodeproject.org/files/ENCFF965PMN/@@download/ENCFF965PMN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF143ULP bigWig fold change over control ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015LGN, ENCFF356DXM, ENCFF909PBK 363874343 ENCODE Processing Pipeline 55ffb0085a4abd756a7cce165c4cca67 https://www.encodeproject.org/files/ENCFF143ULP/@@download/ENCFF143ULP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF254HVT bigBed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF482QCD 8077155 ENCODE Processing Pipeline adaddd95d74124a8a2f2df98562db42a https://www.encodeproject.org/files/ENCFF254HVT/@@download/ENCFF254HVT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF637UCH bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF909PBK 4129954 ENCODE Processing Pipeline 57d7a5c17ad4e34839c687283c055542 https://www.encodeproject.org/files/ENCFF637UCH/@@download/ENCFF637UCH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF373MRZ bigBed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF537QBW 11065487 ENCODE Processing Pipeline f1df6d9287037777f64f19644a5fe370 https://www.encodeproject.org/files/ENCFF373MRZ/@@download/ENCFF373MRZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF537QBW bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF015LGN, ENCFF356DXM, ENCFF909PBK 4867420 ENCODE Processing Pipeline 7d12842eb93b26b678bde2a06e03ca9a https://www.encodeproject.org/files/ENCFF537QBW/@@download/ENCFF537QBW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF482QCD bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LGN, ENCFF356DXM 3821978 ENCODE Processing Pipeline 8d71600478030b25b1fc13ff209c056d https://www.encodeproject.org/files/ENCFF482QCD/@@download/ENCFF482QCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF466IAT bigBed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF637UCH 9906067 ENCODE Processing Pipeline b1f931c306bb11bd7f39a9269cba26b7 https://www.encodeproject.org/files/ENCFF466IAT/@@download/ENCFF466IAT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF148PBJ bed narrowPeak conservative idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF482QCD, ENCFF537QBW, ENCFF637UCH 99222 ENCODE Processing Pipeline 7e31dcdc4fe701346ca15015fe6cad8e https://www.encodeproject.org/files/ENCFF148PBJ/@@download/ENCFF148PBJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF379EPK bed narrowPeak optimal idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF482QCD, ENCFF537QBW, ENCFF637UCH 146369 ENCODE Processing Pipeline 7ca39501c1ae70ddd76818ac016a1ea6 https://www.encodeproject.org/files/ENCFF379EPK/@@download/ENCFF379EPK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF744GVW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF379EPK 293595 ENCODE Processing Pipeline 47b7b6089a5ad51588a4fbb4fbc7481e https://www.encodeproject.org/files/ENCFF744GVW/@@download/ENCFF744GVW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF654NWF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF148PBJ 185687 ENCODE Processing Pipeline a9963c9eaca328d76872460b4228ab86 https://www.encodeproject.org/files/ENCFF654NWF/@@download/ENCFF654NWF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000OOI bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OOU 534059084 Richard Myers, HAIB 7df5c565319f9c85b2a8e4bb51f448e1 https://www.encodeproject.org/files/ENCFF000OOI/@@download/ENCFF000OOI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOJ bigBed broadPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBG 82267 Richard Myers, HAIB bb7a0db3f62dc00371e2b7ff23fce66f https://www.encodeproject.org/files/ENCFF000OOJ/@@download/ENCFF000OOJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOK bigBed broadPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBH 60836 Richard Myers, HAIB ba5132dcfb55e1409872b89d149fc071 https://www.encodeproject.org/files/ENCFF000OOK/@@download/ENCFF000OOK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOM bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OOX 738447607 Richard Myers, HAIB bb2b48294f55e79391332926c25f1a90 https://www.encodeproject.org/files/ENCFF000OOM/@@download/ENCFF000OOM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OON bigWig raw signal ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 4497032 Richard Myers, HAIB 427c73a5398f9a8a8bd9c645b664b57a https://www.encodeproject.org/files/ENCFF000OON/@@download/ENCFF000OON.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OOP bigWig raw signal ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 4343489 Richard Myers, HAIB 8f7b39b5b046c16f076aebb7336fa46f https://www.encodeproject.org/files/ENCFF000OOP/@@download/ENCFF000OOP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OOU fastq reads ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 460171270 Richard Myers, HAIB c5b627b3beafca6ec2cb2caf7e8c8204 https://www.encodeproject.org/files/ENCFF000OOU/@@download/ENCFF000OOU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOX fastq reads ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 688439057 Richard Myers, HAIB c3ea2dd8eef1c5f3159d84ad5df77c19 https://www.encodeproject.org/files/ENCFF000OOX/@@download/ENCFF000OOX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UBG bed broadPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 23668 Richard Myers, HAIB 04f6d3af4c5285bedb1a1de437ed6b48 https://www.encodeproject.org/files/ENCFF001UBG/@@download/ENCFF001UBG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001UBH bed broadPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 9165 Richard Myers, HAIB 68f976689c90084c75cd1317638b704f https://www.encodeproject.org/files/ENCFF001UBH/@@download/ENCFF001UBH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CIW bed narrowPeak optimal idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 23367 ENCODE Consortium Analysis Working Group 87b3080e3d4809021de0b609dfd15d90 https://www.encodeproject.org/files/ENCFF002CIW/@@download/ENCFF002CIW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF765GXY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIW 81774 ENCODE Consortium a89834895fc533880620580bd88996f7 https://www.encodeproject.org/files/ENCFF765GXY/@@download/ENCFF765GXY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF953PTA bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOU, ENCFF643CGH 313575489 ENCODE Processing Pipeline f8b9aa321a79dee58f71480fa5da0035 https://www.encodeproject.org/files/ENCFF953PTA/@@download/ENCFF953PTA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF983LHJ bam unfiltered alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOU, ENCFF643CGH 618412225 ENCODE Processing Pipeline 876b5c140c9083badee56ada042cd9c2 https://www.encodeproject.org/files/ENCFF983LHJ/@@download/ENCFF983LHJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF608UEO bam unfiltered alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOX, ENCFF643CGH 857560501 ENCODE Processing Pipeline 34c7a61f7ea8c59c3ded517916e734c2 https://www.encodeproject.org/files/ENCFF608UEO/@@download/ENCFF608UEO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF113JVG bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOX, ENCFF643CGH 459780381 ENCODE Processing Pipeline a43f6092f2269a073f30b2d0d67a5211 https://www.encodeproject.org/files/ENCFF113JVG/@@download/ENCFF113JVG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF203RDK bam unfiltered alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOX, ENCFF807MUK 855075546 ENCODE Processing Pipeline d4736faa6332c632fa0a537b92575d91 https://www.encodeproject.org/files/ENCFF203RDK/@@download/ENCFF203RDK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF362KQB bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOX, ENCFF807MUK 460085432 ENCODE Processing Pipeline ff65f6901b9d305840e00da53f9974ba https://www.encodeproject.org/files/ENCFF362KQB/@@download/ENCFF362KQB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF086OOD bam unfiltered alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOU, ENCFF807MUK 616578915 ENCODE Processing Pipeline 992e65d8784ce106cdebc9fc874c2af6 https://www.encodeproject.org/files/ENCFF086OOD/@@download/ENCFF086OOD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF325QSH bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOU, ENCFF807MUK 313873500 ENCODE Processing Pipeline 929eac20b814bc3f62a53fbd63779ca1 https://www.encodeproject.org/files/ENCFF325QSH/@@download/ENCFF325QSH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF134AJJ bigWig signal p-value ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF953PTA 401989855 ENCODE Processing Pipeline 4b0ba9ddb2cf3429ebff5e8b5b3df9ab https://www.encodeproject.org/files/ENCFF134AJJ/@@download/ENCFF134AJJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF795NWA bigWig signal p-value ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF113JVG, ENCFF948LKH 344917911 ENCODE Processing Pipeline 5c0d128a93cc8dbede2ce076e5367105 https://www.encodeproject.org/files/ENCFF795NWA/@@download/ENCFF795NWA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF668QTN bigBed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF747HPV 7857731 ENCODE Processing Pipeline adfc21468a3834bfff8990f83cb08125 https://www.encodeproject.org/files/ENCFF668QTN/@@download/ENCFF668QTN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF232EAA bigWig signal p-value ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF113JVG, ENCFF948LKH, ENCFF953PTA 474978149 ENCODE Processing Pipeline 71f704a00e51dad64ad88919acff99f6 https://www.encodeproject.org/files/ENCFF232EAA/@@download/ENCFF232EAA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF616GYO bigWig fold change over control ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF953PTA 200064543 ENCODE Processing Pipeline c9f89b645d95890777edd8e7d9003cd3 https://www.encodeproject.org/files/ENCFF616GYO/@@download/ENCFF616GYO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF475WHI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF799ASV 75016 ENCODE Processing Pipeline 53302a5a61c5ff6bd66d8f2f04cdf44f https://www.encodeproject.org/files/ENCFF475WHI/@@download/ENCFF475WHI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF838WWX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF063OKB 89760 ENCODE Processing Pipeline cde036d1d6c6514b1f13c6298c1d8f3f https://www.encodeproject.org/files/ENCFF838WWX/@@download/ENCFF838WWX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF747HPV bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF113JVG, ENCFF948LKH 3547621 ENCODE Processing Pipeline ab899ca04d8f09b69c7bddc371069dd4 https://www.encodeproject.org/files/ENCFF747HPV/@@download/ENCFF747HPV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF498IQF bigWig fold change over control ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF113JVG, ENCFF948LKH, ENCFF953PTA 421807916 ENCODE Processing Pipeline 8355567483ed000c53b52d81df0fcdaf https://www.encodeproject.org/files/ENCFF498IQF/@@download/ENCFF498IQF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF338ISC bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF953PTA 2819444 ENCODE Processing Pipeline f3c42233d2da0b40eb8bfc649de5a749 https://www.encodeproject.org/files/ENCFF338ISC/@@download/ENCFF338ISC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF044XOD bigBed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF338ISC 6111675 ENCODE Processing Pipeline a9b5f02dcd91e186bebf4a61ccb78fd9 https://www.encodeproject.org/files/ENCFF044XOD/@@download/ENCFF044XOD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF413VTX bigWig fold change over control ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF113JVG, ENCFF948LKH 275338736 ENCODE Processing Pipeline ef7bf44f12af319707a571d0db3fea93 https://www.encodeproject.org/files/ENCFF413VTX/@@download/ENCFF413VTX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF759SBD bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF113JVG, ENCFF948LKH, ENCFF953PTA 4064269 ENCODE Processing Pipeline 088d7b7c5fdc76165db1f60af4b148ce https://www.encodeproject.org/files/ENCFF759SBD/@@download/ENCFF759SBD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF535RPC bigBed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF759SBD 10681399 ENCODE Processing Pipeline a500a14170d91f636fb42bb054397b3d https://www.encodeproject.org/files/ENCFF535RPC/@@download/ENCFF535RPC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF799ASV bed narrowPeak conservative idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF338ISC, ENCFF419RSJ, ENCFF747HPV, ENCFF759SBD 13528 ENCODE Processing Pipeline e0ed5c09867e86d36111b53b937e8b92 https://www.encodeproject.org/files/ENCFF799ASV/@@download/ENCFF799ASV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF063OKB bed narrowPeak optimal idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF338ISC, ENCFF419RSJ, ENCFF747HPV, ENCFF759SBD 23332 ENCODE Processing Pipeline e8bebbdea3d446deb3f5f0230d2fe018 https://www.encodeproject.org/files/ENCFF063OKB/@@download/ENCFF063OKB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF651ASM bigWig signal p-value ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF325QSH, ENCFF356DXM 404145849 ENCODE Processing Pipeline 7356eecc2ba482d3fcd358212bf36eb8 https://www.encodeproject.org/files/ENCFF651ASM/@@download/ENCFF651ASM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF179ONJ bigWig fold change over control ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF325QSH, ENCFF356DXM 200574013 ENCODE Processing Pipeline 4792d4e458d541540ff65aa2b0885b92 https://www.encodeproject.org/files/ENCFF179ONJ/@@download/ENCFF179ONJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF988EGL bigWig signal p-value ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF362KQB 368603858 ENCODE Processing Pipeline aa1418fdeaba1ab7592e2753f861210d https://www.encodeproject.org/files/ENCFF988EGL/@@download/ENCFF988EGL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF336VBZ bigWig signal p-value ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325QSH, ENCFF356DXM, ENCFF362KQB 426125433 ENCODE Processing Pipeline 262165a38d94ade852d7d349441f5619 https://www.encodeproject.org/files/ENCFF336VBZ/@@download/ENCFF336VBZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF809JDK bigWig fold change over control ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF362KQB 271020039 ENCODE Processing Pipeline b6719a058ecdb7f9021a24c4c743f94d https://www.encodeproject.org/files/ENCFF809JDK/@@download/ENCFF809JDK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF754FCZ bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF362KQB 3596762 ENCODE Processing Pipeline 9508e5a11ebc957a6811d300eb0de39f https://www.encodeproject.org/files/ENCFF754FCZ/@@download/ENCFF754FCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF753LPW bigWig fold change over control ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325QSH, ENCFF356DXM, ENCFF362KQB 419269035 ENCODE Processing Pipeline 49f77cd7dd792952190dbac29c1e870b https://www.encodeproject.org/files/ENCFF753LPW/@@download/ENCFF753LPW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF338LQY bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF325QSH, ENCFF356DXM 2942610 ENCODE Processing Pipeline d15ee169871f726922412f6da18c4d90 https://www.encodeproject.org/files/ENCFF338LQY/@@download/ENCFF338LQY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF823FFU bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325QSH, ENCFF356DXM, ENCFF362KQB 4220322 ENCODE Processing Pipeline 44e903f4fe479eb911a2909e20c2a536 https://www.encodeproject.org/files/ENCFF823FFU/@@download/ENCFF823FFU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF991LJN bigBed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF823FFU 10881642 ENCODE Processing Pipeline 48d06ac9e0f89b55e4d2aa99177a001f https://www.encodeproject.org/files/ENCFF991LJN/@@download/ENCFF991LJN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF325HCG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF489OQH 74017 ENCODE Processing Pipeline 37ae4eb55f81c5b628c9c79819e03761 https://www.encodeproject.org/files/ENCFF325HCG/@@download/ENCFF325HCG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF489OQH bed narrowPeak conservative idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF338LQY, ENCFF754FCZ, ENCFF823FFU 13357 ENCODE Processing Pipeline 8bc2c1678f3a69bdfacf8a82bf805039 https://www.encodeproject.org/files/ENCFF489OQH/@@download/ENCFF489OQH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF526GQR bigBed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF754FCZ 7962077 ENCODE Processing Pipeline 731cd8f769e4178738b8782d6c512ee7 https://www.encodeproject.org/files/ENCFF526GQR/@@download/ENCFF526GQR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF418RZE bed narrowPeak optimal idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF338LQY, ENCFF754FCZ, ENCFF823FFU 22674 ENCODE Processing Pipeline 545aadabf867370d3f560aacd02b24a1 https://www.encodeproject.org/files/ENCFF418RZE/@@download/ENCFF418RZE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF727GQJ bigBed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF338LQY 6301686 ENCODE Processing Pipeline fef57a5d2fe5bfb5edda7b846de8a7e4 https://www.encodeproject.org/files/ENCFF727GQJ/@@download/ENCFF727GQJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF050NWW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF418RZE 88002 ENCODE Processing Pipeline 7661d9295c1687c976f24323c9d9d5e6 https://www.encodeproject.org/files/ENCFF050NWW/@@download/ENCFF050NWW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF887BKA fastq reads ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 1 50 single-ended 2281198254 Richard Myers, HAIB 9bd13a544349ee81954aa27252608855 SRA:SRR5338649 https://www.encodeproject.org/files/ENCFF887BKA/@@download/ENCFF887BKA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OEB/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF354VZR fastq reads ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 1 50 single-ended 1747145757 Richard Myers, HAIB 2ad82ac441df32f657ffeeaa693df0de SRA:SRR5338648 https://www.encodeproject.org/files/ENCFF354VZR/@@download/ENCFF354VZR.fastq.gz Illumina HiSeq 2000 /files/ENCFF000ODZ/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF692MUQ bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF643CGH 1678527986 ENCODE Processing Pipeline 8940799a9adf2bc0f16bf4d48df7cc6d https://www.encodeproject.org/files/ENCFF692MUQ/@@download/ENCFF692MUQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF626FVT bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF643CGH, ENCFF887BKA 2107759784 ENCODE Processing Pipeline c43c8d60a403148e62643ab3db8744a4 https://www.encodeproject.org/files/ENCFF626FVT/@@download/ENCFF626FVT.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF389CJX bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF807MUK, ENCFF887BKA 2123956065 ENCODE Processing Pipeline 1022094d760cebdc79906916afcf3927 https://www.encodeproject.org/files/ENCFF389CJX/@@download/ENCFF389CJX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF669GJB bam unfiltered alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF807MUK 1678875995 ENCODE Processing Pipeline 41390f8a96869acfbd6f9e7fef15afca https://www.encodeproject.org/files/ENCFF669GJB/@@download/ENCFF669GJB.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF697EBC bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF807MUK, ENCFF887BKA 847566567 ENCODE Processing Pipeline 99d4d82c09345a62a1973841e6ede201 https://www.encodeproject.org/files/ENCFF697EBC/@@download/ENCFF697EBC.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF772ZLA bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF643CGH 870804648 ENCODE Processing Pipeline 19a03c716ac209069b26a1ccec1e0a8d https://www.encodeproject.org/files/ENCFF772ZLA/@@download/ENCFF772ZLA.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF554RCH bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF643CGH, ENCFF887BKA 855534594 ENCODE Processing Pipeline 7dfb0b136c0d6d0572ba376312932b55 https://www.encodeproject.org/files/ENCFF554RCH/@@download/ENCFF554RCH.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF092VSU bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF807MUK 863714936 ENCODE Processing Pipeline 3f8e471bd628e7c08363f9e8c8174fee https://www.encodeproject.org/files/ENCFF092VSU/@@download/ENCFF092VSU.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF061RWI bigBed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF031TYY 345706 ENCODE Processing Pipeline 34114e27a7e20c9d725f7253e4cd625b https://www.encodeproject.org/files/ENCFF061RWI/@@download/ENCFF061RWI.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF420YHY bed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF454MFQ, ENCFF799MMA, ENCFF836SKU 204510 ENCODE Processing Pipeline f584a6cb5c5943f310fe7bc4badc95af https://www.encodeproject.org/files/ENCFF420YHY/@@download/ENCFF420YHY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF974AWJ bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF092VSU, ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 764383057 ENCODE Processing Pipeline 39911326d3fa4dbe978e21a941895500 https://www.encodeproject.org/files/ENCFF974AWJ/@@download/ENCFF974AWJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF727MOG bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 681391571 ENCODE Processing Pipeline 5cc55e0d9645ca94d18f2c7b409296f8 https://www.encodeproject.org/files/ENCFF727MOG/@@download/ENCFF727MOG.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF740WZP bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 613593186 ENCODE Processing Pipeline d5dd7c173a90fb3d37bee73f24d791c9 https://www.encodeproject.org/files/ENCFF740WZP/@@download/ENCFF740WZP.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF454MFQ bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF092VSU, ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 6400676 ENCODE Processing Pipeline 7d68e4ce346c8a44f63f8878c2a7b3fd https://www.encodeproject.org/files/ENCFF454MFQ/@@download/ENCFF454MFQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF740BDA bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF836SKU 10996696 ENCODE Processing Pipeline 6f40318c9e64b7172e48e002c5bc0653 https://www.encodeproject.org/files/ENCFF740BDA/@@download/ENCFF740BDA.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF316ZBT bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF799MMA 13135183 ENCODE Processing Pipeline 37c24e7473f09e395b0d6fc56e468643 https://www.encodeproject.org/files/ENCFF316ZBT/@@download/ENCFF316ZBT.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF253MUG bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF454MFQ 13243890 ENCODE Processing Pipeline e1a8020ef07f3ca8e0f9e136a721a3fe https://www.encodeproject.org/files/ENCFF253MUG/@@download/ENCFF253MUG.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF442AII bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF092VSU, ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 688403930 ENCODE Processing Pipeline 2149b2df82cfba295257566e444fdc6c https://www.encodeproject.org/files/ENCFF442AII/@@download/ENCFF442AII.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF863EUS bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 446121770 ENCODE Processing Pipeline a70210ad4396abdbec902abc4816c3ae https://www.encodeproject.org/files/ENCFF863EUS/@@download/ENCFF863EUS.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF031TYY bed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF001TDO, ENCFF454MFQ, ENCFF799MMA, ENCFF836SKU 167872 ENCODE Processing Pipeline 6b186fa9eb84e4b964f124526a34df6b https://www.encodeproject.org/files/ENCFF031TYY/@@download/ENCFF031TYY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF122POQ bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 432187408 ENCODE Processing Pipeline 44eed2e292afdee28e7901dcd1f355e6 https://www.encodeproject.org/files/ENCFF122POQ/@@download/ENCFF122POQ.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF836SKU bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 5381323 ENCODE Processing Pipeline d585bead9e1e3f1a9aa5da5bbb2b3c93 https://www.encodeproject.org/files/ENCFF836SKU/@@download/ENCFF836SKU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF799MMA bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 5877259 ENCODE Processing Pipeline dcb1d7b6ba2f33da62248a26ecb5f149 https://www.encodeproject.org/files/ENCFF799MMA/@@download/ENCFF799MMA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF390ORN bigBed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF420YHY 476284 ENCODE Processing Pipeline e83d300cc561f23352f35c239d6f600e https://www.encodeproject.org/files/ENCFF390ORN/@@download/ENCFF390ORN.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF230YKN bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF554RCH, ENCFF754WTG, ENCFF966AVZ 732849606 ENCODE Processing Pipeline 2dfa68b671e1ad90951451b014f8f1ef https://www.encodeproject.org/files/ENCFF230YKN/@@download/ENCFF230YKN.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF935LZP bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 592819923 ENCODE Processing Pipeline 1d4fe8c0c90fcf024ebbb9e512f4bf5b https://www.encodeproject.org/files/ENCFF935LZP/@@download/ENCFF935LZP.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF478FRH bigWig signal p-value ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF554RCH, ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 783129977 ENCODE Processing Pipeline a7f6d20af3660d8c6c25deb0e2a3d195 https://www.encodeproject.org/files/ENCFF478FRH/@@download/ENCFF478FRH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF711VLR bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF554RCH, ENCFF754WTG, ENCFF966AVZ 440877057 ENCODE Processing Pipeline 98d158d3b156dd5191ac1f9e6d5de7c5 https://www.encodeproject.org/files/ENCFF711VLR/@@download/ENCFF711VLR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF945IOL bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 427461668 ENCODE Processing Pipeline aefb1105a4eceb8c94c7b1a05cd280ca https://www.encodeproject.org/files/ENCFF945IOL/@@download/ENCFF945IOL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF674GHR bigWig fold change over control ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF554RCH, ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 713245454 ENCODE Processing Pipeline e916f08142836e5c55f322d9b1806e62 https://www.encodeproject.org/files/ENCFF674GHR/@@download/ENCFF674GHR.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF484UXN bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 5691583 ENCODE Processing Pipeline ef01a24688242ee1e58c2d8681ce106e https://www.encodeproject.org/files/ENCFF484UXN/@@download/ENCFF484UXN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF599RLK bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF181ICO 13236138 ENCODE Processing Pipeline f43541d7cef9eb903d53c51fd6bde4ea https://www.encodeproject.org/files/ENCFF599RLK/@@download/ENCFF599RLK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF650GEE bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF554RCH, ENCFF754WTG, ENCFF966AVZ 5166830 ENCODE Processing Pipeline 94edb79b81d90f09e2bad686137907ec https://www.encodeproject.org/files/ENCFF650GEE/@@download/ENCFF650GEE.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF181ICO bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF554RCH, ENCFF754WTG, ENCFF772ZLA, ENCFF966AVZ 6130068 ENCODE Processing Pipeline d35fb1000ed64794716f066026558b0f https://www.encodeproject.org/files/ENCFF181ICO/@@download/ENCFF181ICO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF801WCK bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF484UXN 13071703 ENCODE Processing Pipeline eef32405c68c4df8a2d78ad9b7b26df0 https://www.encodeproject.org/files/ENCFF801WCK/@@download/ENCFF801WCK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF266DYD bigBed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF533MFQ 354041 ENCODE Processing Pipeline 15127f35da9155dc15c9659745e6d6fe https://www.encodeproject.org/files/ENCFF266DYD/@@download/ENCFF266DYD.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF949QBH bigBed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF650GEE 10905871 ENCODE Processing Pipeline c1f8be7dbcefb7def1e01fed95bbd20a https://www.encodeproject.org/files/ENCFF949QBH/@@download/ENCFF949QBH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF533MFQ bed narrowPeak conservative idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF181ICO, ENCFF419RSJ, ENCFF484UXN, ENCFF650GEE 173518 ENCODE Processing Pipeline a1dd3107317a2b7972727801e58eea61 https://www.encodeproject.org/files/ENCFF533MFQ/@@download/ENCFF533MFQ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF417SVR bed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF181ICO, ENCFF419RSJ, ENCFF484UXN, ENCFF650GEE 205072 ENCODE Processing Pipeline b88d6c975642a609e014bcc85e010b4e https://www.encodeproject.org/files/ENCFF417SVR/@@download/ENCFF417SVR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF520WAX bigBed narrowPeak optimal idr thresholded peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1, 2 ENCFF417SVR 476591 ENCODE Processing Pipeline b241e1995fdf8c1a34b1da9b2cd3b23b https://www.encodeproject.org/files/ENCFF520WAX/@@download/ENCFF520WAX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF168RUF bam unfiltered alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF031RWN, ENCFF031WIT, ENCFF807MUK 5157204413 ENCODE Processing Pipeline 8f28748b0bb800e510def4c38f734e5d https://www.encodeproject.org/files/ENCFF168RUF/@@download/ENCFF168RUF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF258EEK bam unfiltered alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF071PWE, ENCFF602NSL, ENCFF807MUK 4691950552 ENCODE Processing Pipeline 74f4a074cca09c9321eeb1600969875b https://www.encodeproject.org/files/ENCFF258EEK/@@download/ENCFF258EEK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF031RWN fastq reads ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF031WIT 2377990939 Michael Snyder, Stanford 721be130b03936f1a65ce1f46c02a6ce SRA:SRR5112158 https://www.encodeproject.org/files/ENCFF031RWN/@@download/ENCFF031RWN.fastq.gz Illumina HiSeq 2000 /files/ENCFF285JYI/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF031WIT fastq reads ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF031RWN 2381568938 Michael Snyder, Stanford a33e7ae6e44bfec5645cefa9e75d0469 SRA:SRR5112158 https://www.encodeproject.org/files/ENCFF031WIT/@@download/ENCFF031WIT.fastq.gz Illumina HiSeq 2000 /files/ENCFF420KFM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF602NSL fastq reads ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF071PWE 2230031642 Michael Snyder, Stanford 7cf636d0ec7665659129fcc278c8fb4f SRA:SRR5112159 https://www.encodeproject.org/files/ENCFF602NSL/@@download/ENCFF602NSL.fastq.gz Illumina HiSeq 2000 /files/ENCFF285JYI/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF071PWE fastq reads ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF602NSL 2232655074 Michael Snyder, Stanford ce7af8260b3d179bed89bf18f4de75f7 SRA:SRR5112159 https://www.encodeproject.org/files/ENCFF071PWE/@@download/ENCFF071PWE.fastq.gz Illumina HiSeq 2000 /files/ENCFF420KFM/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF602FUW bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF071PWE, ENCFF602NSL, ENCFF807MUK 3229198483 ENCODE Processing Pipeline 292f7bf8147f95924578bee182d7deb0 https://www.encodeproject.org/files/ENCFF602FUW/@@download/ENCFF602FUW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF559EGU bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF031RWN, ENCFF031WIT, ENCFF807MUK 4188110604 ENCODE Processing Pipeline 4104474b5a57c8e3b27a507c41c7b2f0 https://www.encodeproject.org/files/ENCFF559EGU/@@download/ENCFF559EGU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF876NQO bigWig signal p-value ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF181PST, ENCFF559EGU 1163579004 ENCODE Processing Pipeline 8b6fb16ddd9f49b58dcc74f7d31ee0b1 https://www.encodeproject.org/files/ENCFF876NQO/@@download/ENCFF876NQO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF139HRS bigWig signal p-value ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF181PST, ENCFF602FUW 866178607 ENCODE Processing Pipeline de9e6fedf2fc6e72136749d21288b61f https://www.encodeproject.org/files/ENCFF139HRS/@@download/ENCFF139HRS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF732CQW bigWig signal p-value ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF181PST, ENCFF559EGU, ENCFF602FUW 1334410645 ENCODE Processing Pipeline 985462d51a4684a1db97bf1c7c4525b9 https://www.encodeproject.org/files/ENCFF732CQW/@@download/ENCFF732CQW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF722EJM bigWig fold change over control ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF181PST, ENCFF559EGU 1133095059 ENCODE Processing Pipeline 16d305f8c59e63e8951c6c2eb61c12d7 https://www.encodeproject.org/files/ENCFF722EJM/@@download/ENCFF722EJM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF679CAA bigWig fold change over control ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF181PST, ENCFF602FUW 989030839 ENCODE Processing Pipeline 0239077c400b425f48de68bc0166f3a7 https://www.encodeproject.org/files/ENCFF679CAA/@@download/ENCFF679CAA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF992YWK bigWig fold change over control ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF181PST, ENCFF559EGU, ENCFF602FUW 1534982667 ENCODE Processing Pipeline 60453bc390f40ad4f9b0b05625658289 https://www.encodeproject.org/files/ENCFF992YWK/@@download/ENCFF992YWK.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF961ADP bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF181PST, ENCFF559EGU 7002170 ENCODE Processing Pipeline 6ece835dcbdf4828c1f339abadab621f https://www.encodeproject.org/files/ENCFF961ADP/@@download/ENCFF961ADP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF177SSM bigBed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF961ADP 13079336 ENCODE Processing Pipeline 8af35796c38fc16dd4538f0fa62f6874 https://www.encodeproject.org/files/ENCFF177SSM/@@download/ENCFF177SSM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF857RCJ bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF181PST, ENCFF559EGU, ENCFF602FUW 7224900 ENCODE Processing Pipeline 54181619aa6c737d06304a79dfb147f5 https://www.encodeproject.org/files/ENCFF857RCJ/@@download/ENCFF857RCJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF597NAA bigBed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF814SES 13337350 ENCODE Processing Pipeline 9073dd1b19ca1577415d0bb7d6ff42a4 https://www.encodeproject.org/files/ENCFF597NAA/@@download/ENCFF597NAA.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF814SES bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF181PST, ENCFF602FUW 6403721 ENCODE Processing Pipeline adcbd23aff63735c0557f15b852f6b3c https://www.encodeproject.org/files/ENCFF814SES/@@download/ENCFF814SES.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF345OVQ bigBed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF857RCJ 13068081 ENCODE Processing Pipeline fd0c7a53ebe604e69543aef9822b3632 https://www.encodeproject.org/files/ENCFF345OVQ/@@download/ENCFF345OVQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF561XXS bam unfiltered alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF071PWE, ENCFF602NSL, ENCFF643CGH 4697281378 ENCODE Processing Pipeline 2554a40e9b663f2477094b42ccf872c3 https://www.encodeproject.org/files/ENCFF561XXS/@@download/ENCFF561XXS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF162RPJ bam unfiltered alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF031RWN, ENCFF031WIT, ENCFF643CGH 5165721872 ENCODE Processing Pipeline 059551d973804009e2c163ea0fe04b60 https://www.encodeproject.org/files/ENCFF162RPJ/@@download/ENCFF162RPJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF922JWO bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF071PWE, ENCFF602NSL, ENCFF643CGH 3231598909 ENCODE Processing Pipeline 7433bf237c54671efc372cffb2b7d98a https://www.encodeproject.org/files/ENCFF922JWO/@@download/ENCFF922JWO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF701KAF bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF031RWN, ENCFF031WIT, ENCFF643CGH 4190431613 ENCODE Processing Pipeline ca8a5b3559cf494f078701b0d3ece52a https://www.encodeproject.org/files/ENCFF701KAF/@@download/ENCFF701KAF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF814IGR bigWig signal p-value ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF243UPF, ENCFF701KAF 1104258762 ENCODE Processing Pipeline f76225048efc5c588931514b7c25c2ba https://www.encodeproject.org/files/ENCFF814IGR/@@download/ENCFF814IGR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF841DRS bigWig signal p-value ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF243UPF, ENCFF922JWO 874121301 ENCODE Processing Pipeline 8b2e8da937924585c04aaad9363a82cc https://www.encodeproject.org/files/ENCFF841DRS/@@download/ENCFF841DRS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF948ZHL bigWig signal p-value ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF243UPF, ENCFF701KAF, ENCFF922JWO 1335049511 ENCODE Processing Pipeline 67b5794f48030c4d40be1070142b6671 https://www.encodeproject.org/files/ENCFF948ZHL/@@download/ENCFF948ZHL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF956LZN bigWig fold change over control ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF243UPF, ENCFF701KAF 1141040470 ENCODE Processing Pipeline 8044fdb92ce6adf3009dc24ed4559e1e https://www.encodeproject.org/files/ENCFF956LZN/@@download/ENCFF956LZN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF134SNJ bigWig fold change over control ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF243UPF, ENCFF922JWO 989020490 ENCODE Processing Pipeline 6420edc2cdb9b1fa4056f232c98f7889 https://www.encodeproject.org/files/ENCFF134SNJ/@@download/ENCFF134SNJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF630FXX bigWig fold change over control ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF243UPF, ENCFF701KAF, ENCFF922JWO 1536287456 ENCODE Processing Pipeline 6aeb4cf7738a9a5de3774b72fd902d67 https://www.encodeproject.org/files/ENCFF630FXX/@@download/ENCFF630FXX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF473FJI bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF243UPF, ENCFF701KAF 6927190 ENCODE Processing Pipeline 65d00adfe73f5ddf5450c8937d913ec3 https://www.encodeproject.org/files/ENCFF473FJI/@@download/ENCFF473FJI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF497BUE bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF243UPF, ENCFF922JWO 6263965 ENCODE Processing Pipeline bbfd8520e9d478f8c05d7c6a1e2ed665 https://www.encodeproject.org/files/ENCFF497BUE/@@download/ENCFF497BUE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF367SQU bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF243UPF, ENCFF701KAF, ENCFF922JWO 7185007 ENCODE Processing Pipeline 4be035025e8e07a8a87e686bccb7e86d https://www.encodeproject.org/files/ENCFF367SQU/@@download/ENCFF367SQU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF826VDX bigBed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF473FJI 13091080 ENCODE Processing Pipeline 411b5e60e822d3d1e9851f81080c66d1 https://www.encodeproject.org/files/ENCFF826VDX/@@download/ENCFF826VDX.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF117XNB bigBed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF497BUE 13344735 ENCODE Processing Pipeline b2025e4d6bf0d58258a6acd7403a02dc https://www.encodeproject.org/files/ENCFF117XNB/@@download/ENCFF117XNB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF563DFG bigBed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF367SQU 13075622 ENCODE Processing Pipeline 172dea9440136fabb09cc030a751b507 https://www.encodeproject.org/files/ENCFF563DFG/@@download/ENCFF563DFG.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF251ZSJ bed narrowPeak conservative idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF367SQU, ENCFF419RSJ, ENCFF473FJI, ENCFF497BUE 206360 ENCODE Processing Pipeline c919cc6810dc7324655e518b9f096c61 https://www.encodeproject.org/files/ENCFF251ZSJ/@@download/ENCFF251ZSJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF203LRV bed narrowPeak optimal idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF367SQU, ENCFF419RSJ, ENCFF473FJI, ENCFF497BUE 326196 ENCODE Processing Pipeline 12b2738402bccb1e62af49e3ce0ed95d https://www.encodeproject.org/files/ENCFF203LRV/@@download/ENCFF203LRV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF175VAF bigBed narrowPeak conservative idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF251ZSJ 470579 ENCODE Processing Pipeline be2051e47e57bf589017299fda3a1c38 https://www.encodeproject.org/files/ENCFF175VAF/@@download/ENCFF175VAF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF027NQD bigBed narrowPeak optimal idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF203LRV 781937 ENCODE Processing Pipeline 451dfe744796ef4f5082ed8c2f275a30 https://www.encodeproject.org/files/ENCFF027NQD/@@download/ENCFF027NQD.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF470DUK bigBed narrowPeak conservative idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF372XLP 349530 ENCODE Processing Pipeline eb25d5a3251c21e5a5417cd81f65591f https://www.encodeproject.org/files/ENCFF470DUK/@@download/ENCFF470DUK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF372XLP bed narrowPeak conservative idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF814SES, ENCFF857RCJ, ENCFF961ADP 176211 ENCODE Processing Pipeline ca85f4e90a52e224291c6f8884748547 https://www.encodeproject.org/files/ENCFF372XLP/@@download/ENCFF372XLP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF388AJH bed narrowPeak optimal idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF814SES, ENCFF857RCJ, ENCFF961ADP 272085 ENCODE Processing Pipeline 84c15f8be1f7b09a51e64536e6a6dd11 https://www.encodeproject.org/files/ENCFF388AJH/@@download/ENCFF388AJH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF931FBY bigBed narrowPeak optimal idr thresholded peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF388AJH 578404 ENCODE Processing Pipeline 55b1c8ff33351c72f74fd9cd1cc52276 https://www.encodeproject.org/files/ENCFF931FBY/@@download/ENCFF931FBY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF000SDM bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SEC 1197730119 Vishwanath Iyer, UTA ef3bf096285a71524f572642253581f3 https://www.encodeproject.org/files/ENCFF000SDM/@@download/ENCFF000SDM.bam hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF000SDN bigWig base overlap signal ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1248334406 Vishwanath Iyer, UTA 361215dbeff0c3cc6a2ef127a2a18286 https://www.encodeproject.org/files/ENCFF000SDN/@@download/ENCFF000SDN.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from control insufficient read depth, insufficient read depth missing control alignments ENCFF000SDO bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SEB 1010851834 Vishwanath Iyer, UTA e608fa0077ad70bef47d326615bd8eb5 https://www.encodeproject.org/files/ENCFF000SDO/@@download/ENCFF000SDO.bam hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF000SDP bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UUB 1940398 Vishwanath Iyer, UTA de6d5e76b42dfd045838e5bf7ba72a76 https://www.encodeproject.org/files/ENCFF000SDP/@@download/ENCFF000SDP.bigBed hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF000SDR bigWig signal ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 4349963393 Vishwanath Iyer, UTA 3e054cc1ec3f3d6bbb4d1c0cd9501a4a https://www.encodeproject.org/files/ENCFF000SDR/@@download/ENCFF000SDR.bigWig hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from control insufficient read depth, insufficient read depth missing control alignments ENCFF000SEB fastq reads ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 1315668694 Vishwanath Iyer, UTA 6caf3da334d4c1fcbd8100c53dac7019 https://www.encodeproject.org/files/ENCFF000SEB/@@download/ENCFF000SEB.fastq.gz Illumina Genome Analyzer /files/ENCFF000SEH/ released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF000SEC fastq reads ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 1542512924 Vishwanath Iyer, UTA af1e399f16e126b5bf92ec2566a8a676 https://www.encodeproject.org/files/ENCFF000SEC/@@download/ENCFF000SEC.fastq.gz Illumina Genome Analyzer /files/ENCFF000SEH/ released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF001UUB bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1237270 Vishwanath Iyer, UTA 40bca92b83bf3c44b8a04a79f5933a63 https://www.encodeproject.org/files/ENCFF001UUB/@@download/ENCFF001UUB.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from control insufficient read depth, insufficient read depth missing control alignments ENCFF433QNI bam unfiltered alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SEB, ENCFF807MUK 1450727411 ENCODE Processing Pipeline 1dc7c2b80fa0e9f87b799195b8c7c19e https://www.encodeproject.org/files/ENCFF433QNI/@@download/ENCFF433QNI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF513CTU bam unfiltered alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SEC, ENCFF807MUK 1733527000 ENCODE Processing Pipeline d1c898de69a612e57fa58838f24d2d4b https://www.encodeproject.org/files/ENCFF513CTU/@@download/ENCFF513CTU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF337IBI bam unfiltered alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SEB, ENCFF643CGH 1453012536 ENCODE Processing Pipeline 904a9d19cee10467cbc0761663a5bda3 https://www.encodeproject.org/files/ENCFF337IBI/@@download/ENCFF337IBI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF429NUZ bam unfiltered alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SEC, ENCFF643CGH 1736368362 ENCODE Processing Pipeline 889301e28cf4273ef478109f49dd8c76 https://www.encodeproject.org/files/ENCFF429NUZ/@@download/ENCFF429NUZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF061SRP bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SEC, ENCFF643CGH 673879639 ENCODE Processing Pipeline 1fb9f5170006fe0ff0583d33700771cd https://www.encodeproject.org/files/ENCFF061SRP/@@download/ENCFF061SRP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF481VJG bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SEB, ENCFF807MUK 496027567 ENCODE Processing Pipeline e5d323ff7a8cb74547ab7b746909dbd7 https://www.encodeproject.org/files/ENCFF481VJG/@@download/ENCFF481VJG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF059JNI bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SEB, ENCFF643CGH 495722923 ENCODE Processing Pipeline d5b57d7655767709b821e7851fdd127c https://www.encodeproject.org/files/ENCFF059JNI/@@download/ENCFF059JNI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF211IRJ bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SEC, ENCFF807MUK 674176637 ENCODE Processing Pipeline 561731705285fbf358bafae4b7dfdef3 https://www.encodeproject.org/files/ENCFF211IRJ/@@download/ENCFF211IRJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF647BQW bigWig fold change over control ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF059JNI 127919921 ENCODE Processing Pipeline 26e8756a243fa116d4451f879d9376d9 https://www.encodeproject.org/files/ENCFF647BQW/@@download/ENCFF647BQW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF982WZX bigWig signal p-value ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF061SRP 224181735 ENCODE Processing Pipeline bdfafc7e6938a7164e25e52cc30323f2 https://www.encodeproject.org/files/ENCFF982WZX/@@download/ENCFF982WZX.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF820KEK bigWig fold change over control ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF061SRP 165533318 ENCODE Processing Pipeline 15320808814d62daf1e04b7433845d9a https://www.encodeproject.org/files/ENCFF820KEK/@@download/ENCFF820KEK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF116WBA bigWig signal p-value ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF059JNI 208232327 ENCODE Processing Pipeline b6bdc1aa68257a0f19113b56731e0bfa https://www.encodeproject.org/files/ENCFF116WBA/@@download/ENCFF116WBA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF292KXW bigWig fold change over control ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF059JNI, ENCFF061SRP 268145634 ENCODE Processing Pipeline 5a871868832e662a7ff9fb5908fc40ab https://www.encodeproject.org/files/ENCFF292KXW/@@download/ENCFF292KXW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF988TSY bigWig signal p-value ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF059JNI, ENCFF061SRP 211621113 ENCODE Processing Pipeline f71cb11a317246c2f911fb1c7194a4aa https://www.encodeproject.org/files/ENCFF988TSY/@@download/ENCFF988TSY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF404VMK bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF673PVL 7509601 ENCODE Processing Pipeline 4f85e96de1c8661740815e050c22a21a https://www.encodeproject.org/files/ENCFF404VMK/@@download/ENCFF404VMK.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF631DPB bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF655NUL 8225227 ENCODE Processing Pipeline 0c6ad950a9f627dc26ecbc794c04f77a https://www.encodeproject.org/files/ENCFF631DPB/@@download/ENCFF631DPB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF673PVL bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF061SRP 3802979 ENCODE Processing Pipeline e8625a4f7a1596a6f471d30c2887c751 https://www.encodeproject.org/files/ENCFF673PVL/@@download/ENCFF673PVL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF335TNG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF720CRM 1113070 ENCODE Processing Pipeline f742189a12e23263b148caf945e01cba https://www.encodeproject.org/files/ENCFF335TNG/@@download/ENCFF335TNG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF350MHZ bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF059JNI 3120017 ENCODE Processing Pipeline 28099c83f34b8fdac24df5bd4932cb69 https://www.encodeproject.org/files/ENCFF350MHZ/@@download/ENCFF350MHZ.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF655NUL bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF059JNI, ENCFF061SRP 4112664 ENCODE Processing Pipeline df16579c91c155a8bce9c3f956f62087 https://www.encodeproject.org/files/ENCFF655NUL/@@download/ENCFF655NUL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF814EXW bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF350MHZ 6381822 ENCODE Processing Pipeline d0f00c3cf7950440183669168e4377d8 https://www.encodeproject.org/files/ENCFF814EXW/@@download/ENCFF814EXW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF720CRM bed narrowPeak conservative idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF350MHZ, ENCFF419RSJ, ENCFF655NUL, ENCFF673PVL 585843 ENCODE Processing Pipeline 09491c7d77a1015d1fdfd20f44707732 https://www.encodeproject.org/files/ENCFF720CRM/@@download/ENCFF720CRM.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF068YLN bed narrowPeak optimal idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF350MHZ, ENCFF419RSJ, ENCFF655NUL, ENCFF673PVL 617040 ENCODE Processing Pipeline e5782db28a71821e72311bc876197b00 https://www.encodeproject.org/files/ENCFF068YLN/@@download/ENCFF068YLN.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF604DQF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF068YLN 1158825 ENCODE Processing Pipeline 60623f73fa83a21e045078d86af27bcc https://www.encodeproject.org/files/ENCFF604DQF/@@download/ENCFF604DQF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF302SSB bigWig fold change over control ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF211IRJ, ENCFF737EOY 165083940 ENCODE Processing Pipeline 4a1db4d5c3f5eefd7f36255dfc1b43b9 https://www.encodeproject.org/files/ENCFF302SSB/@@download/ENCFF302SSB.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF881NID bigWig signal p-value ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF211IRJ, ENCFF481VJG, ENCFF737EOY 211715819 ENCODE Processing Pipeline 211b6336da45bba6bdc4918fdae224dc https://www.encodeproject.org/files/ENCFF881NID/@@download/ENCFF881NID.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF958BPH bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF250AFB 8239122 ENCODE Processing Pipeline 17cfd2e8db8ccf6fa7c9bfc86148e3ca https://www.encodeproject.org/files/ENCFF958BPH/@@download/ENCFF958BPH.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF138CNN bigWig signal p-value ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF211IRJ, ENCFF737EOY 224277991 ENCODE Processing Pipeline f24b3bb6546d5fe6b32f56cbbbf6f33c https://www.encodeproject.org/files/ENCFF138CNN/@@download/ENCFF138CNN.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF310RCE bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF211IRJ, ENCFF737EOY 3764862 ENCODE Processing Pipeline 14542614543bec9e38353480665df435 https://www.encodeproject.org/files/ENCFF310RCE/@@download/ENCFF310RCE.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF307XCC bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF481VJG, ENCFF737EOY 3128817 ENCODE Processing Pipeline 68dd84671ebfd6108b3d782fffa3f26b https://www.encodeproject.org/files/ENCFF307XCC/@@download/ENCFF307XCC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF881YDR bed narrowPeak optimal idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF250AFB, ENCFF307XCC, ENCFF310RCE 616195 ENCODE Processing Pipeline 57dc061a40055e9cafafda1448190a37 https://www.encodeproject.org/files/ENCFF881YDR/@@download/ENCFF881YDR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF771LBM bigWig fold change over control ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF211IRJ, ENCFF481VJG, ENCFF737EOY 268627749 ENCODE Processing Pipeline 542cc8b7ebd5e356c9feb9e53281786c https://www.encodeproject.org/files/ENCFF771LBM/@@download/ENCFF771LBM.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF550JAQ bed narrowPeak conservative idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF250AFB, ENCFF307XCC, ENCFF310RCE 590010 ENCODE Processing Pipeline 6f9fbcde7bbd88ef344a4864500fd536 https://www.encodeproject.org/files/ENCFF550JAQ/@@download/ENCFF550JAQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF326FAJ bigWig fold change over control ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF481VJG, ENCFF737EOY 127639886 ENCODE Processing Pipeline c5a2ee66bf7abd683addde6211c8295c https://www.encodeproject.org/files/ENCFF326FAJ/@@download/ENCFF326FAJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF678JOS bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF310RCE 7450590 ENCODE Processing Pipeline dc375e68fc51fdf4f5246b08246c97e2 https://www.encodeproject.org/files/ENCFF678JOS/@@download/ENCFF678JOS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF485QSV bigWig signal p-value ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF481VJG, ENCFF737EOY 197970135 ENCODE Processing Pipeline a5bed8ae9ef9cc3e8b780a7d717da07b https://www.encodeproject.org/files/ENCFF485QSV/@@download/ENCFF485QSV.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF250AFB bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF211IRJ, ENCFF481VJG, ENCFF737EOY 4126649 ENCODE Processing Pipeline 9cc1bce2f8c89c62e706aa4aa733c905 https://www.encodeproject.org/files/ENCFF250AFB/@@download/ENCFF250AFB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF912CFN bigBed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF307XCC 6372032 ENCODE Processing Pipeline 881e95c4c6c4b1b80ca7b70910f4e824 https://www.encodeproject.org/files/ENCFF912CFN/@@download/ENCFF912CFN.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF904TWR bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF550JAQ 1119160 ENCODE Processing Pipeline 831e3ee06d8fedd9bee9dbe348a1821e https://www.encodeproject.org/files/ENCFF904TWR/@@download/ENCFF904TWR.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF988TUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF881YDR 1155697 ENCODE Processing Pipeline 033a277ef7e690ee25ab90d29b5ab1af https://www.encodeproject.org/files/ENCFF988TUS/@@download/ENCFF988TUS.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF000WHH bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WHR 1351936733 Kevin Struhl, HMS 0e33b8b92068290ab88689b3702129c2 https://www.encodeproject.org/files/ENCFF000WHH/@@download/ENCFF000WHH.bam hg19 archived low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF000WHI bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFV 130523 Kevin Struhl, HMS 0177300aaaf1a286e8ea784bd622ecb1 https://www.encodeproject.org/files/ENCFF000WHI/@@download/ENCFF000WHI.bigBed hg19 archived low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF000WHJ bigWig signal ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 450466430 Kevin Struhl, HMS 5594b2b337842b4b37638e808f3e1906 https://www.encodeproject.org/files/ENCFF000WHJ/@@download/ENCFF000WHJ.bigWig hg19 archived low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read length ENCFF000WHK bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WHO 1204191262 Kevin Struhl, HMS a2cf93be89430d0b6b5315077529c3c4 https://www.encodeproject.org/files/ENCFF000WHK/@@download/ENCFF000WHK.bam hg19 archived low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF000WHO fastq reads ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 932846131 Kevin Struhl, HMS 4a6a0d6cea1c5117a6202bb59061c882 https://www.encodeproject.org/files/ENCFF000WHO/@@download/ENCFF000WHO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF000WHR fastq reads ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 1071601835 Kevin Struhl, HMS 5ce2f8caa19edbebe64c3cdbdf636c7f https://www.encodeproject.org/files/ENCFF000WHR/@@download/ENCFF000WHR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF001VFV bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 18105 Kevin Struhl, HMS a8e0edae1edc927c22e0b994f237ca9f https://www.encodeproject.org/files/ENCFF001VFV/@@download/ENCFF001VFV.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read length ENCFF002CPY bed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 20659 ENCODE Consortium Analysis Working Group ad7ed1123e1ab6fe0617cc27f0cc7b59 https://www.encodeproject.org/files/ENCFF002CPY/@@download/ENCFF002CPY.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read length ENCFF805KPI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPY 136587 ENCODE Consortium 820fa9b2a5753265ae73716904e72810 https://www.encodeproject.org/files/ENCFF805KPI/@@download/ENCFF805KPI.bigBed hg19 archived low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF272UWD bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF643CGH 572610554 ENCODE Processing Pipeline 3296a45599f30ad495054e3e9708180e https://www.encodeproject.org/files/ENCFF272UWD/@@download/ENCFF272UWD.bam GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF038NOW bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF643CGH 1095254330 ENCODE Processing Pipeline 195d846fe5a8c58f9efff606d8bc5c7c https://www.encodeproject.org/files/ENCFF038NOW/@@download/ENCFF038NOW.bam GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF240HQW bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF643CGH 624669308 ENCODE Processing Pipeline d4cd200bf679a11c0836ffe96120f520 https://www.encodeproject.org/files/ENCFF240HQW/@@download/ENCFF240HQW.bam GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF369TPH bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF643CGH 1234279032 ENCODE Processing Pipeline 15ec1f2f5bf28e10ef8e9d88042d7da8 https://www.encodeproject.org/files/ENCFF369TPH/@@download/ENCFF369TPH.bam GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF380FAI bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF807MUK 1228994646 ENCODE Processing Pipeline 7dd264e3d437ceaacde2720570837624 https://www.encodeproject.org/files/ENCFF380FAI/@@download/ENCFF380FAI.bam hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF540GCE bam unfiltered alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF807MUK 1090615461 ENCODE Processing Pipeline 4a97104a8022e8c4f367b92ac4024d0d https://www.encodeproject.org/files/ENCFF540GCE/@@download/ENCFF540GCE.bam hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF661CVS bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF807MUK 572890189 ENCODE Processing Pipeline d5e3547bebb544ee976b11013a1e95b3 https://www.encodeproject.org/files/ENCFF661CVS/@@download/ENCFF661CVS.bam hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF159LJP bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF807MUK 625030008 ENCODE Processing Pipeline 1610db70f776b8b73786fe6a1cff48a9 https://www.encodeproject.org/files/ENCFF159LJP/@@download/ENCFF159LJP.bam hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF833VKG bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 3538496 ENCODE Processing Pipeline 403f4af056e826f159402b5e36b35478 https://www.encodeproject.org/files/ENCFF833VKG/@@download/ENCFF833VKG.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF908NXJ bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159LJP, ENCFF420MOQ, ENCFF661CVS 3903969 ENCODE Processing Pipeline 40737260b206a8ba4643f967b5725b31 https://www.encodeproject.org/files/ENCFF908NXJ/@@download/ENCFF908NXJ.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF985UPO bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF833VKG 7579107 ENCODE Processing Pipeline 08a34cd195105188b29baf404e242816 https://www.encodeproject.org/files/ENCFF985UPO/@@download/ENCFF985UPO.bigBed hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF318EJD bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF063ECO 7696243 ENCODE Processing Pipeline 932664974473b79754de1c6c263f32cf https://www.encodeproject.org/files/ENCFF318EJD/@@download/ENCFF318EJD.bigBed hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF208KWW bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 212783675 ENCODE Processing Pipeline c4c04366363926d617688fda69e55945 https://www.encodeproject.org/files/ENCFF208KWW/@@download/ENCFF208KWW.bigWig hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF582DLT bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 241102728 ENCODE Processing Pipeline 2f22f3843f9ddc31d1e9f5ee8c76af49 https://www.encodeproject.org/files/ENCFF582DLT/@@download/ENCFF582DLT.bigWig hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF499NNE bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 224573354 ENCODE Processing Pipeline e795b373329689ea0b46df9b8135066d https://www.encodeproject.org/files/ENCFF499NNE/@@download/ENCFF499NNE.bigWig hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF971DNG bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159LJP, ENCFF420MOQ, ENCFF661CVS 423398982 ENCODE Processing Pipeline 2feb4426212d016320915da9aa7fb604 https://www.encodeproject.org/files/ENCFF971DNG/@@download/ENCFF971DNG.bigWig hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF063ECO bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 3547313 ENCODE Processing Pipeline c74221405b0d14a76020741da11f2479 https://www.encodeproject.org/files/ENCFF063ECO/@@download/ENCFF063ECO.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF096KKH bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 207700620 ENCODE Processing Pipeline f29717a5472c5b3b71d57f450fb63259 https://www.encodeproject.org/files/ENCFF096KKH/@@download/ENCFF096KKH.bigWig hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF078ONC bed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF063ECO, ENCFF833VKG, ENCFF908NXJ 10345 ENCODE Processing Pipeline 7221cdfc247691d7e19ff5ad92c93081 https://www.encodeproject.org/files/ENCFF078ONC/@@download/ENCFF078ONC.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF330IDY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF183SZO 61955 ENCODE Processing Pipeline e4af08c5ebb868c908662925644bdc5c https://www.encodeproject.org/files/ENCFF330IDY/@@download/ENCFF330IDY.bigBed GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF941ELU bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159LJP, ENCFF420MOQ, ENCFF661CVS 193093413 ENCODE Processing Pipeline be8b7a0c3e97dc95036ecbe5a580eac3 https://www.encodeproject.org/files/ENCFF941ELU/@@download/ENCFF941ELU.bigWig hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF105CNQ bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF908NXJ 10502863 ENCODE Processing Pipeline 766f77f77d2cd439c21122fe0adc0b36 https://www.encodeproject.org/files/ENCFF105CNQ/@@download/ENCFF105CNQ.bigBed hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF310XJC bed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF063ECO, ENCFF833VKG, ENCFF908NXJ 11888 ENCODE Processing Pipeline c74d3fcbe69e36a64d3a973909d60c6a https://www.encodeproject.org/files/ENCFF310XJC/@@download/ENCFF310XJC.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF021PNT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF310XJC 64261 ENCODE Processing Pipeline 4822a426cb446016312c726fe64fa931 https://www.encodeproject.org/files/ENCFF021PNT/@@download/ENCFF021PNT.bigBed hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF239YGF bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF240HQW, ENCFF272UWD 187145955 ENCODE Processing Pipeline 204526721d6e66d8db296023de094ec4 https://www.encodeproject.org/files/ENCFF239YGF/@@download/ENCFF239YGF.bigWig GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF891ODT bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF272UWD 221579378 ENCODE Processing Pipeline dc0558d7598b2dd1a886a1f318fd959f https://www.encodeproject.org/files/ENCFF891ODT/@@download/ENCFF891ODT.bigWig GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF636KMF bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF240HQW, ENCFF272UWD 413580535 ENCODE Processing Pipeline 27e8defd381ef4ff76338491dfed61ff https://www.encodeproject.org/files/ENCFF636KMF/@@download/ENCFF636KMF.bigWig GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF030QRQ bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF240HQW 3537183 ENCODE Processing Pipeline f54e9cb285fa34504aa85aa2cd5bc471 https://www.encodeproject.org/files/ENCFF030QRQ/@@download/ENCFF030QRQ.bed.gz GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF050KOG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078ONC 61232 ENCODE Processing Pipeline c50af2aa6fd369f9786f631863b1dae8 https://www.encodeproject.org/files/ENCFF050KOG/@@download/ENCFF050KOG.bigBed hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF889XRD bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF240HQW, ENCFF272UWD 3930496 ENCODE Processing Pipeline e978b3837542ed08331d7a3e2e5109f5 https://www.encodeproject.org/files/ENCFF889XRD/@@download/ENCFF889XRD.bed.gz GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF607HZF bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF880REY 7164695 ENCODE Processing Pipeline 63e9775428e37897a761092f071c6a2d https://www.encodeproject.org/files/ENCFF607HZF/@@download/ENCFF607HZF.bigBed GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF708JPB bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF889XRD 10547752 ENCODE Processing Pipeline c35ca661081cd88939762c2f037a436d https://www.encodeproject.org/files/ENCFF708JPB/@@download/ENCFF708JPB.bigBed GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF183SZO bed narrowPeak conservative idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030QRQ, ENCFF419RSJ, ENCFF880REY, ENCFF889XRD 10291 ENCODE Processing Pipeline c6a753841ab3f6f0eda365034756ac4a https://www.encodeproject.org/files/ENCFF183SZO/@@download/ENCFF183SZO.bed.gz GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF411WEH bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF240HQW 214957699 ENCODE Processing Pipeline 3731e11ba224b897260cdfcda7c104f2 https://www.encodeproject.org/files/ENCFF411WEH/@@download/ENCFF411WEH.bigWig GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF410ZQR bigWig fold change over control ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF240HQW 239317718 ENCODE Processing Pipeline de6e6eabb8ef51fbb901f69c872aca43 https://www.encodeproject.org/files/ENCFF410ZQR/@@download/ENCFF410ZQR.bigWig GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF880REY bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF272UWD 3356728 ENCODE Processing Pipeline 06023081fc4b19e3ffcfc24763fa6bba https://www.encodeproject.org/files/ENCFF880REY/@@download/ENCFF880REY.bed.gz GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF260NAX bed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030QRQ, ENCFF419RSJ, ENCFF880REY, ENCFF889XRD 11477 ENCODE Processing Pipeline e432f5a3292c81551792774293d98693 https://www.encodeproject.org/files/ENCFF260NAX/@@download/ENCFF260NAX.bed.gz GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF597ADN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF260NAX 63988 ENCODE Processing Pipeline ed2a4d99d5682745f20e40ed0c118f8d https://www.encodeproject.org/files/ENCFF597ADN/@@download/ENCFF597ADN.bigBed GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF475CHB bigWig signal p-value ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF272UWD 207504000 ENCODE Processing Pipeline 9acebee473baab34ce44d26adfaff8dc https://www.encodeproject.org/files/ENCFF475CHB/@@download/ENCFF475CHB.bigWig GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF358JMR bigBed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF030QRQ 7586139 ENCODE Processing Pipeline c5e10bebe9c339126daa0ff973dae67f https://www.encodeproject.org/files/ENCFF358JMR/@@download/ENCFF358JMR.bigBed GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF000NRS bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NSE 1478712395 Richard Myers, HAIB 40ef1959e8fff00edfd7fae5ff4e464f https://www.encodeproject.org/files/ENCFF000NRS/@@download/ENCFF000NRS.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRT bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NSG 1558188304 Richard Myers, HAIB 28a42898cb247fa44be5a54f01b3600b https://www.encodeproject.org/files/ENCFF000NRT/@@download/ENCFF000NRT.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRU bigBed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TWB 985177 Richard Myers, HAIB 4a7b14554242dfbf3dfc4d9e97bba1f8 https://www.encodeproject.org/files/ENCFF000NRU/@@download/ENCFF000NRU.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRV bigBed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TWC 581798 Richard Myers, HAIB d70b65de5d43da0234713593f0139475 https://www.encodeproject.org/files/ENCFF000NRV/@@download/ENCFF000NRV.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NRW bigWig raw signal ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 27511896 Richard Myers, HAIB 2ebfbdd5858399d28339db6d4e993fe7 https://www.encodeproject.org/files/ENCFF000NRW/@@download/ENCFF000NRW.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NRY bigWig raw signal ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 22525504 Richard Myers, HAIB 00f38df47be48ace7d8f047950dbaa81 https://www.encodeproject.org/files/ENCFF000NRY/@@download/ENCFF000NRY.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000NSE fastq reads ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1489076519 Richard Myers, HAIB 63f4f27aec8f104430b804d34ecf73ac https://www.encodeproject.org/files/ENCFF000NSE/@@download/ENCFF000NSE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000NSG fastq reads ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1540251647 Richard Myers, HAIB 4866c289fa70e483301e527a8cc4c768 https://www.encodeproject.org/files/ENCFF000NSG/@@download/ENCFF000NSG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TWB bed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 1 543464 Richard Myers, HAIB 23c296db0b763b75ed21f16a9a22b78b https://www.encodeproject.org/files/ENCFF001TWB/@@download/ENCFF001TWB.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001TWC bed broadPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 1 367570 Richard Myers, HAIB e46b31c8f63ef32e90ae45d9f5a8c13e https://www.encodeproject.org/files/ENCFF001TWC/@@download/ENCFF001TWC.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CGO bed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 464879 ENCODE Consortium Analysis Working Group 1c594a9c3fd87caf450bd1216464eb34 https://www.encodeproject.org/files/ENCFF002CGO/@@download/ENCFF002CGO.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF944NMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGO 951701 ENCODE Consortium c3af6578e92ab746e599cb41cf183729 https://www.encodeproject.org/files/ENCFF944NMB/@@download/ENCFF944NMB.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF994ZHD bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF643CGH 1074310346 ENCODE Processing Pipeline a8fa51659f44a13ea021bf995201ae86 https://www.encodeproject.org/files/ENCFF994ZHD/@@download/ENCFF994ZHD.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF125CKC bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF643CGH 1686985344 ENCODE Processing Pipeline b476b8cbc235909657c49f59c7474480 https://www.encodeproject.org/files/ENCFF125CKC/@@download/ENCFF125CKC.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF466MRK bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF643CGH 1592510453 ENCODE Processing Pipeline d6dc0a5dd88c7d7b4df2f84519c3afda https://www.encodeproject.org/files/ENCFF466MRK/@@download/ENCFF466MRK.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF396BCM bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF643CGH 962132180 ENCODE Processing Pipeline c179a3c2c9095755766891c7c2c2f840 https://www.encodeproject.org/files/ENCFF396BCM/@@download/ENCFF396BCM.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF870CUX bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF807MUK 1590614502 ENCODE Processing Pipeline 4689fd4a222f017e75b5e3ee8d488196 https://www.encodeproject.org/files/ENCFF870CUX/@@download/ENCFF870CUX.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF221PEC bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF807MUK 954884711 ENCODE Processing Pipeline 46c1bd399708a542e17ee816290147b5 https://www.encodeproject.org/files/ENCFF221PEC/@@download/ENCFF221PEC.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF868WFT bam unfiltered alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF807MUK 1686052430 ENCODE Processing Pipeline c0cb9e25c6b39679fc1b85f9108e5cb4 https://www.encodeproject.org/files/ENCFF868WFT/@@download/ENCFF868WFT.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF957MQC bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF807MUK 1067644656 ENCODE Processing Pipeline 5cdfe5a785f504275beeea240bcdadb2 https://www.encodeproject.org/files/ENCFF957MQC/@@download/ENCFF957MQC.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF027TXI bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396BCM, ENCFF537DAJ 551256867 ENCODE Processing Pipeline 2331377c3a329f7a2db0684ddb20aade https://www.encodeproject.org/files/ENCFF027TXI/@@download/ENCFF027TXI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599RJO bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF994ZHD 598220841 ENCODE Processing Pipeline fcb80b86d9190012a125e3a0baa46818 https://www.encodeproject.org/files/ENCFF599RJO/@@download/ENCFF599RJO.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF977SLV bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF396BCM, ENCFF537DAJ, ENCFF994ZHD 857546693 ENCODE Processing Pipeline dca475b6bb1621413473d1c8b414b9eb https://www.encodeproject.org/files/ENCFF977SLV/@@download/ENCFF977SLV.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF412GSP bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396BCM, ENCFF537DAJ 519607483 ENCODE Processing Pipeline 015cf6ee1aaa861be2030ebc1df9bf30 https://www.encodeproject.org/files/ENCFF412GSP/@@download/ENCFF412GSP.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF076MKO bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF994ZHD 616400105 ENCODE Processing Pipeline f32c0ebcbf42ef970f825d92841b362e https://www.encodeproject.org/files/ENCFF076MKO/@@download/ENCFF076MKO.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF485LWD bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396BCM, ENCFF537DAJ 6230980 ENCODE Processing Pipeline 720905cff0b320a19debc940e0fa7939 https://www.encodeproject.org/files/ENCFF485LWD/@@download/ENCFF485LWD.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF262RFD bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF396BCM, ENCFF537DAJ, ENCFF994ZHD 6860354 ENCODE Processing Pipeline cc30a15a3c0508b51cd31125d21cb18a https://www.encodeproject.org/files/ENCFF262RFD/@@download/ENCFF262RFD.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF405AYX bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF843AOW 12926320 ENCODE Processing Pipeline d4adb3962337c7e8551f80f4b371bd69 https://www.encodeproject.org/files/ENCFF405AYX/@@download/ENCFF405AYX.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF732LDY bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF396BCM, ENCFF537DAJ, ENCFF994ZHD 897902526 ENCODE Processing Pipeline fdc7d50fa3bbda48664280330d7bb383 https://www.encodeproject.org/files/ENCFF732LDY/@@download/ENCFF732LDY.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF843AOW bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF994ZHD 6536779 ENCODE Processing Pipeline 10c6e75121fa75557c741eb58a7d7614 https://www.encodeproject.org/files/ENCFF843AOW/@@download/ENCFF843AOW.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF904NHV bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF262RFD 12828716 ENCODE Processing Pipeline bbe3656d6448928df9e5d3269592e82e https://www.encodeproject.org/files/ENCFF904NHV/@@download/ENCFF904NHV.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF090VQB bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF485LWD 12905973 ENCODE Processing Pipeline 6cf0fb04a3a27ed996fa3b5f8424d20b https://www.encodeproject.org/files/ENCFF090VQB/@@download/ENCFF090VQB.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF579NXQ bed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF262RFD, ENCFF419RSJ, ENCFF485LWD, ENCFF843AOW 485441 ENCODE Processing Pipeline 65e1b7946a998e561a558520c0306938 https://www.encodeproject.org/files/ENCFF579NXQ/@@download/ENCFF579NXQ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF972UWC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF579NXQ 897629 ENCODE Processing Pipeline bba2de8e1b73ba36040937eb7f9ec179 https://www.encodeproject.org/files/ENCFF972UWC/@@download/ENCFF972UWC.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF806KKM bed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF262RFD, ENCFF419RSJ, ENCFF485LWD, ENCFF843AOW 521189 ENCODE Processing Pipeline 89b042a0e66462ee10bdabd5f2fcada2 https://www.encodeproject.org/files/ENCFF806KKM/@@download/ENCFF806KKM.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF799DFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF806KKM 952138 ENCODE Processing Pipeline c01817e2f85615c2ce7e8cca36dad7ed https://www.encodeproject.org/files/ENCFF799DFN/@@download/ENCFF799DFN.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF726TLF bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 656641487 ENCODE Processing Pipeline a4f1d69e50a263ae5dea8fd7b551b2c9 https://www.encodeproject.org/files/ENCFF726TLF/@@download/ENCFF726TLF.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF104KBC bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 598581194 ENCODE Processing Pipeline 50a03dc9629e083cb768371e422e5d59 https://www.encodeproject.org/files/ENCFF104KBC/@@download/ENCFF104KBC.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF214DHW bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF221PEC, ENCFF508HCX, ENCFF957MQC 910286428 ENCODE Processing Pipeline fd223d2d9669fbe5f2dbf2efe8559bc2 https://www.encodeproject.org/files/ENCFF214DHW/@@download/ENCFF214DHW.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF013ZEQ bigWig fold change over control ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 518137432 ENCODE Processing Pipeline 63225bf0b4bfedf8751a7b0af7ebf75e https://www.encodeproject.org/files/ENCFF013ZEQ/@@download/ENCFF013ZEQ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF821FHS bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF221PEC, ENCFF508HCX, ENCFF957MQC 865288498 ENCODE Processing Pipeline 5fcaf345e4d1d3acbb922269552f2ed0 https://www.encodeproject.org/files/ENCFF821FHS/@@download/ENCFF821FHS.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF609KOY bed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF071BNB, ENCFF378GKG, ENCFF599NQC 516541 ENCODE Processing Pipeline 64817c03f12a08a77eb97b9c2fabe83d https://www.encodeproject.org/files/ENCFF609KOY/@@download/ENCFF609KOY.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF599NQC bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 6265334 ENCODE Processing Pipeline 53716309948af71654d84b0b6d0e153d https://www.encodeproject.org/files/ENCFF599NQC/@@download/ENCFF599NQC.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF071BNB bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF221PEC, ENCFF508HCX, ENCFF957MQC 6876513 ENCODE Processing Pipeline 0edd70f9312587973769bef7e96facf5 https://www.encodeproject.org/files/ENCFF071BNB/@@download/ENCFF071BNB.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF926QHY bigWig signal p-value ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 559692774 ENCODE Processing Pipeline a428368f8b7bd0d6c20f86112f85878b https://www.encodeproject.org/files/ENCFF926QHY/@@download/ENCFF926QHY.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF378GKG bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 6546881 ENCODE Processing Pipeline f62beb40d570ace6d8f3c26e2bfaa89a https://www.encodeproject.org/files/ENCFF378GKG/@@download/ENCFF378GKG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF702NQG bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF071BNB 12941692 ENCODE Processing Pipeline cdc126b47d48db9b4a9af7f86350372c https://www.encodeproject.org/files/ENCFF702NQG/@@download/ENCFF702NQG.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF133GHG bed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF071BNB, ENCFF378GKG, ENCFF599NQC 478482 ENCODE Processing Pipeline 697af8c7cb34aa9dab3e3cabf59c6eea https://www.encodeproject.org/files/ENCFF133GHG/@@download/ENCFF133GHG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF813GOH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF609KOY 1006119 ENCODE Processing Pipeline 1c0260905bd54dee0f68cb61683ac8a2 https://www.encodeproject.org/files/ENCFF813GOH/@@download/ENCFF813GOH.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF777HWF bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF599NQC 12954304 ENCODE Processing Pipeline bd5376e3224a69161ba95ac86a232bda https://www.encodeproject.org/files/ENCFF777HWF/@@download/ENCFF777HWF.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF247LGD bigBed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF378GKG 12984733 ENCODE Processing Pipeline 09ce9c0eddb31d8feeae617c88da3763 https://www.encodeproject.org/files/ENCFF247LGD/@@download/ENCFF247LGD.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF018YGJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF133GHG 949392 ENCODE Processing Pipeline 801a10adc5d636526dfa10d68d37ea6b https://www.encodeproject.org/files/ENCFF018YGJ/@@download/ENCFF018YGJ.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000RVZ bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RWH 279084064 Vishwanath Iyer, UTA b6f045181f3c736fe61f1115a8f0769f https://www.encodeproject.org/files/ENCFF000RVZ/@@download/ENCFF000RVZ.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWA bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RWK 258741395 Vishwanath Iyer, UTA ffca69645c43876754c54eadf64fbd4a https://www.encodeproject.org/files/ENCFF000RWA/@@download/ENCFF000RWA.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWB bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3 ENCFF000RWO 565453098 Vishwanath Iyer, UTA d8c249b29be04638c9b23cc197c7dba1 https://www.encodeproject.org/files/ENCFF000RWB/@@download/ENCFF000RWB.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWC bigWig base overlap signal ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 168398929 Vishwanath Iyer, UTA 9dccab6eae0c53c747788ef69a6e8ede https://www.encodeproject.org/files/ENCFF000RWC/@@download/ENCFF000RWC.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWF bigBed narrowPeak peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE ENCFF001UTE 2273755 Vishwanath Iyer, UTA 88a19c1c4f237d4dfc9062502ee76e46 https://www.encodeproject.org/files/ENCFF000RWF/@@download/ENCFF000RWF.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWH fastq reads ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 35 single-ended 270474920 Vishwanath Iyer, UTA e7d01096a547d126f43b37595ab9a73e https://www.encodeproject.org/files/ENCFF000RWH/@@download/ENCFF000RWH.fastq.gz Illumina Genome Analyzer /files/ENCFF000RWS/ released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWI bigWig signal ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3524086472 Vishwanath Iyer, UTA 71923247a2a46e312b55a484700e8f5e https://www.encodeproject.org/files/ENCFF000RWI/@@download/ENCFF000RWI.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWJ tar validation ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 50419749 Vishwanath Iyer, UTA 19a8516b14dad6f7216581b3e52c9e1e https://www.encodeproject.org/files/ENCFF000RWJ/@@download/ENCFF000RWJ.tar.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWK fastq reads ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 35 single-ended 245054804 Vishwanath Iyer, UTA f5483a78de4fddd0f3b92e3edb3beea7 https://www.encodeproject.org/files/ENCFF000RWK/@@download/ENCFF000RWK.fastq.gz Illumina Genome Analyzer /files/ENCFF000RWS/ released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWO fastq reads ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3 1 35 single-ended 538167339 Vishwanath Iyer, UTA 6f38b2c666e66d2ea2cacb4ce5b6f079 https://www.encodeproject.org/files/ENCFF000RWO/@@download/ENCFF000RWO.fastq.gz Illumina Genome Analyzer /files/ENCFF000RWS/ released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF001UTE bed narrowPeak peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1504839 Vishwanath Iyer, UTA 984abaf5e5a6fa22237906bc107644ac https://www.encodeproject.org/files/ENCFF001UTE/@@download/ENCFF001UTE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF002DBD bed narrowPeak optimal idr thresholded peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1077102 ENCODE Consortium Analysis Working Group 691e48b1344e23067ee35e35c640d364 https://www.encodeproject.org/files/ENCFF002DBD/@@download/ENCFF002DBD.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF593WPV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBD 1884028 ENCODE Consortium 066aca7faab55d1f8536f0a1235afa77 https://www.encodeproject.org/files/ENCFF593WPV/@@download/ENCFF593WPV.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF856DBD bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RWK, ENCFF643CGH 205322054 ENCODE Processing Pipeline 533f6ca06b1b23c1367894b4b1daf2ca https://www.encodeproject.org/files/ENCFF856DBD/@@download/ENCFF856DBD.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF783BDQ bam unfiltered alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RWH, ENCFF643CGH 338352668 ENCODE Processing Pipeline ed11be8f9e0082243c94a283e25c1add https://www.encodeproject.org/files/ENCFF783BDQ/@@download/ENCFF783BDQ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF202NWU bam unfiltered alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3 ENCFF000RWO, ENCFF643CGH 673514776 ENCODE Processing Pipeline 61066b3ad6e829bc2f482094f0d426e5 https://www.encodeproject.org/files/ENCFF202NWU/@@download/ENCFF202NWU.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF003OJN bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3 ENCFF000RWO, ENCFF643CGH 447105380 ENCODE Processing Pipeline 61a0d44bdaf025d7aff8ec185aece787 https://www.encodeproject.org/files/ENCFF003OJN/@@download/ENCFF003OJN.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF242MMQ bam unfiltered alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RWK, ENCFF643CGH 311260955 ENCODE Processing Pipeline ce9760ce1a2ff2f528960a5ec81d814e https://www.encodeproject.org/files/ENCFF242MMQ/@@download/ENCFF242MMQ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF258HHO bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RWH, ENCFF643CGH 223822474 ENCODE Processing Pipeline 0648041472b93a3db4258cd39bb24e1e https://www.encodeproject.org/files/ENCFF258HHO/@@download/ENCFF258HHO.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YGT bam alignments ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YHE 735915824 Kevin Struhl, HMS 2e9b80c6510ccecdd14165f1bc6f6f18 https://www.encodeproject.org/files/ENCFF000YGT/@@download/ENCFF000YGT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGU bam alignments ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YHB 589270885 Kevin Struhl, HMS 8b4d8d2ce10540fdd564eea8f59d1665 https://www.encodeproject.org/files/ENCFF000YGU/@@download/ENCFF000YGU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGV bam alignments ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHD 742901263 Kevin Struhl, HMS f4abeba64a2d9886a8bf70d7678d432d https://www.encodeproject.org/files/ENCFF000YGV/@@download/ENCFF000YGV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGW bigBed narrowPeak peaks ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMD 34762 Kevin Struhl, HMS de5f2c83706d934c4c5e695700ed86c1 https://www.encodeproject.org/files/ENCFF000YGW/@@download/ENCFF000YGW.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGX bigWig signal ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 472485311 Kevin Struhl, HMS 68720131f6b20380b56e36eafed86c4f https://www.encodeproject.org/files/ENCFF000YGX/@@download/ENCFF000YGX.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YHB fastq reads ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 433238242 Kevin Struhl, HMS 45cce05875294332e177c31a1a5d0100 https://www.encodeproject.org/files/ENCFF000YHB/@@download/ENCFF000YHB.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YHD fastq reads ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 548488536 Kevin Struhl, HMS 506b83ebc3758b93828deae47a954f09 https://www.encodeproject.org/files/ENCFF000YHD/@@download/ENCFF000YHD.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YHE fastq reads ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 549121888 Kevin Struhl, HMS e73cba10b39583ddf532c96efc11cc88 https://www.encodeproject.org/files/ENCFF000YHE/@@download/ENCFF000YHE.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VMD bed narrowPeak peaks ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 664 Kevin Struhl, HMS 4932aa8b0f3f34a2c5fe3decb67eb76f https://www.encodeproject.org/files/ENCFF001VMD/@@download/ENCFF001VMD.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CVS bed narrowPeak optimal idr thresholded peaks ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 29151 ENCODE Consortium Analysis Working Group f075234fcb2722a9724e3854f969ff0b https://www.encodeproject.org/files/ENCFF002CVS/@@download/ENCFF002CVS.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF228PQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVS 140599 ENCODE Consortium e94220533984514acc104fffced9753f https://www.encodeproject.org/files/ENCFF228PQV/@@download/ENCFF228PQV.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZKC bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZKX 308165793 Kevin Struhl, HMS fe7cd1fa6590dae4d803ca5ac2829608 https://www.encodeproject.org/files/ENCFF000ZKC/@@download/ENCFF000ZKC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000ZKD bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQE 4919888 Kevin Struhl, HMS 9a064f598a5c0966bcdd62e1ac52e6e2 https://www.encodeproject.org/files/ENCFF000ZKD/@@download/ENCFF000ZKD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000ZKE bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZKY 484014559 Kevin Struhl, HMS 629f73fd2b69b6ee8797d8c595386526 https://www.encodeproject.org/files/ENCFF000ZKE/@@download/ENCFF000ZKE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000ZKF bigWig signal ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 245334863 Kevin Struhl, HMS 359ea5eade7efed184d28026535bbb77 https://www.encodeproject.org/files/ENCFF000ZKF/@@download/ENCFF000ZKF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000ZKX fastq reads ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 856820084 Kevin Struhl, HMS 27e5af76223ef3831a1daa5cc66fa79a https://www.encodeproject.org/files/ENCFF000ZKX/@@download/ENCFF000ZKX.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000ZKY fastq reads ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1392887754 Kevin Struhl, HMS 197678085c50e670e0a35a35c75be5b4 https://www.encodeproject.org/files/ENCFF000ZKY/@@download/ENCFF000ZKY.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001VQE bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2454558 Kevin Struhl, HMS 394878c7a9f5b6977d179c1fe65391b3 https://www.encodeproject.org/files/ENCFF001VQE/@@download/ENCFF001VQE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CZI bed narrowPeak optimal idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 888680 ENCODE Consortium Analysis Working Group 93572c874a066b8042857a6ef1951f7a https://www.encodeproject.org/files/ENCFF002CZI/@@download/ENCFF002CZI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF129CUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZI 1813070 ENCODE Consortium 766244e910c4efcf0bd8c645cfe92e52 https://www.encodeproject.org/files/ENCFF129CUZ/@@download/ENCFF129CUZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF151ZPA bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZKX, ENCFF643CGH 404783912 ENCODE Processing Pipeline 80d1890cd26e75ab947beadabd31403e https://www.encodeproject.org/files/ENCFF151ZPA/@@download/ENCFF151ZPA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF723SOI bam unfiltered alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZKX, ENCFF643CGH 905702274 ENCODE Processing Pipeline a470868b4ff7859944f849aa8457975f https://www.encodeproject.org/files/ENCFF723SOI/@@download/ENCFF723SOI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF617KBU bam unfiltered alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZKY, ENCFF643CGH 1543566289 ENCODE Processing Pipeline 6b5ce28d4bffc4ad8b8668ef6c9472e8 https://www.encodeproject.org/files/ENCFF617KBU/@@download/ENCFF617KBU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF943XYH bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZKY, ENCFF643CGH 755100472 ENCODE Processing Pipeline 366d233abdfbdff90842597bfe1a4bd5 https://www.encodeproject.org/files/ENCFF943XYH/@@download/ENCFF943XYH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF853POL bam unfiltered alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZKX, ENCFF807MUK 903095986 ENCODE Processing Pipeline 3f1d19c1d2d3eda9bc7bde258352030f https://www.encodeproject.org/files/ENCFF853POL/@@download/ENCFF853POL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF397CHN bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZKX, ENCFF807MUK 404917814 ENCODE Processing Pipeline 86f37e7fba67c2137c3ae00e9aaec365 https://www.encodeproject.org/files/ENCFF397CHN/@@download/ENCFF397CHN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF924LJB bam unfiltered alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZKY, ENCFF807MUK 1536136390 ENCODE Processing Pipeline 504ca00f3502c801c3845aa7e9ab96a8 https://www.encodeproject.org/files/ENCFF924LJB/@@download/ENCFF924LJB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF479DQX bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZKY, ENCFF807MUK 755401105 ENCODE Processing Pipeline a0d1bd39bb38223fdf0203b16d32c02b https://www.encodeproject.org/files/ENCFF479DQX/@@download/ENCFF479DQX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF198XUV bigWig signal p-value ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF943XYH 616976997 ENCODE Processing Pipeline b2292e2eb27e78906fe4c5002d55f627 https://www.encodeproject.org/files/ENCFF198XUV/@@download/ENCFF198XUV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF618HWZ bigWig fold change over control ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF943XYH 534688438 ENCODE Processing Pipeline 1fe0cc7d634c4ec6e7ea3544729f1161 https://www.encodeproject.org/files/ENCFF618HWZ/@@download/ENCFF618HWZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF243FPD bigWig fold change over control ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF151ZPA 249749644 ENCODE Processing Pipeline 3935c9f183bf16ff580161745639ae5d https://www.encodeproject.org/files/ENCFF243FPD/@@download/ENCFF243FPD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF568XWL bigWig signal p-value ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF151ZPA 624083556 ENCODE Processing Pipeline 7c0e3c9c150226f5f00088fbbedc6153 https://www.encodeproject.org/files/ENCFF568XWL/@@download/ENCFF568XWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF472WZW bigWig signal p-value ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF151ZPA, ENCFF943XYH 685226473 ENCODE Processing Pipeline fe6869a4d7f6e78fbb945fc907c228cb https://www.encodeproject.org/files/ENCFF472WZW/@@download/ENCFF472WZW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF960CHO bigWig fold change over control ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF151ZPA, ENCFF943XYH 655382175 ENCODE Processing Pipeline fca53e4745e429d50c5afcbc7db09253 https://www.encodeproject.org/files/ENCFF960CHO/@@download/ENCFF960CHO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF042VUD bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF151ZPA 4467972 ENCODE Processing Pipeline 33fac2fe1d9c9881eb3905cc49b20367 https://www.encodeproject.org/files/ENCFF042VUD/@@download/ENCFF042VUD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF724OVP bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF943XYH 5248237 ENCODE Processing Pipeline 0f5076b202c0e0dce42b87d0fdd42ff8 https://www.encodeproject.org/files/ENCFF724OVP/@@download/ENCFF724OVP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF914HRR bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF151ZPA, ENCFF943XYH 5790482 ENCODE Processing Pipeline d4b9df6b56b5539badd93c499ad5f808 https://www.encodeproject.org/files/ENCFF914HRR/@@download/ENCFF914HRR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF924FZB bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF724OVP 11331505 ENCODE Processing Pipeline 2a3e3d099dc7b6817051df896785f7bc https://www.encodeproject.org/files/ENCFF924FZB/@@download/ENCFF924FZB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF718EJX bed narrowPeak conservative idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042VUD, ENCFF419RSJ, ENCFF724OVP, ENCFF914HRR 750018 ENCODE Processing Pipeline 3565b71477784721ed8f115de8ec3e06 https://www.encodeproject.org/files/ENCFF718EJX/@@download/ENCFF718EJX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF775CCD bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF042VUD 10007482 ENCODE Processing Pipeline 2e07b9a815fe55a5fbb412e1239b2edb https://www.encodeproject.org/files/ENCFF775CCD/@@download/ENCFF775CCD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF406EMF bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF914HRR 11563319 ENCODE Processing Pipeline e7d6a728aab6f81f6bb14acf820ca686 https://www.encodeproject.org/files/ENCFF406EMF/@@download/ENCFF406EMF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF933QWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF718EJX 1274299 ENCODE Processing Pipeline 8d996bbebf4a13943a6709d409235da3 https://www.encodeproject.org/files/ENCFF933QWV/@@download/ENCFF933QWV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF950MRJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF854RVF 1389200 ENCODE Processing Pipeline 030a8815c4a1964a896fd03e3c35513e https://www.encodeproject.org/files/ENCFF950MRJ/@@download/ENCFF950MRJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF854RVF bed narrowPeak optimal idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042VUD, ENCFF419RSJ, ENCFF724OVP, ENCFF914HRR 837851 ENCODE Processing Pipeline c467e8d39afce45fbbe9c9bf56e8ece4 https://www.encodeproject.org/files/ENCFF854RVF/@@download/ENCFF854RVF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF537XTD bigWig signal p-value ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF397CHN, ENCFF502MJK 626103105 ENCODE Processing Pipeline f10877da9883bb25951858b6a435d78b https://www.encodeproject.org/files/ENCFF537XTD/@@download/ENCFF537XTD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF044NWY bigWig fold change over control ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF397CHN, ENCFF502MJK 251851764 ENCODE Processing Pipeline a34c130b0300a35c4109329a81921679 https://www.encodeproject.org/files/ENCFF044NWY/@@download/ENCFF044NWY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF812XTP bed narrowPeak conservative idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF496UPK, ENCFF691LNH, ENCFF819FYL 762640 ENCODE Processing Pipeline 65abbcb57d5ee624bbf7dcc470122b17 https://www.encodeproject.org/files/ENCFF812XTP/@@download/ENCFF812XTP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF255XVM bed narrowPeak optimal idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF496UPK, ENCFF691LNH, ENCFF819FYL 850994 ENCODE Processing Pipeline 07b01799230f5ce63cae89d51b676ccb https://www.encodeproject.org/files/ENCFF255XVM/@@download/ENCFF255XVM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF260MWH bigWig fold change over control ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF397CHN, ENCFF479DQX, ENCFF502MJK 667525158 ENCODE Processing Pipeline 57d41b2142cc28f1d4af65ae869a3acd https://www.encodeproject.org/files/ENCFF260MWH/@@download/ENCFF260MWH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF819FYL bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF479DQX, ENCFF502MJK 5278296 ENCODE Processing Pipeline e2fd27250b0ef4cbbb716dc934cd3858 https://www.encodeproject.org/files/ENCFF819FYL/@@download/ENCFF819FYL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF003ILD bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF496UPK 11633705 ENCODE Processing Pipeline 4754ebd4bf68a8f320201a65f7ac9e2c https://www.encodeproject.org/files/ENCFF003ILD/@@download/ENCFF003ILD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF597HBE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF255XVM 1412307 ENCODE Processing Pipeline 1b82a4dcf49f0ac5f81477e6128cf458 https://www.encodeproject.org/files/ENCFF597HBE/@@download/ENCFF597HBE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF108QYT bigWig fold change over control ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF479DQX, ENCFF502MJK 533709474 ENCODE Processing Pipeline 8860c1d5a3d51bc1b2933547ef387673 https://www.encodeproject.org/files/ENCFF108QYT/@@download/ENCFF108QYT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF519ZID bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF691LNH 10008969 ENCODE Processing Pipeline b842ceb7affaca00c9e1ec59f9f514a7 https://www.encodeproject.org/files/ENCFF519ZID/@@download/ENCFF519ZID.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF032CCP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF812XTP 1298042 ENCODE Processing Pipeline 7f2ce748d74893d780119a9083e11198 https://www.encodeproject.org/files/ENCFF032CCP/@@download/ENCFF032CCP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF164CTS bigWig signal p-value ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF479DQX, ENCFF502MJK 669483178 ENCODE Processing Pipeline 0586c9b893f8ab7f8326c8c0dfe61286 https://www.encodeproject.org/files/ENCFF164CTS/@@download/ENCFF164CTS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF496UPK bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF397CHN, ENCFF479DQX, ENCFF502MJK 5851699 ENCODE Processing Pipeline e392eab424d5ff00302160126069abcf https://www.encodeproject.org/files/ENCFF496UPK/@@download/ENCFF496UPK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF838ASZ bigBed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF819FYL 11357903 ENCODE Processing Pipeline 4c745e32eb712fdd984c5400d7a7be7d https://www.encodeproject.org/files/ENCFF838ASZ/@@download/ENCFF838ASZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF820NIV bigWig signal p-value ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF397CHN, ENCFF479DQX, ENCFF502MJK 777334777 ENCODE Processing Pipeline 6cf5808ab5db42de75ef47cc04932373 https://www.encodeproject.org/files/ENCFF820NIV/@@download/ENCFF820NIV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF691LNH bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF397CHN, ENCFF502MJK 4470367 ENCODE Processing Pipeline a072a308f03845167dc53186d0bc537a https://www.encodeproject.org/files/ENCFF691LNH/@@download/ENCFF691LNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000XOP bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 495105987 Michael Snyder, Stanford 62480eaea6ab42cc7b9af4431b29b273 https://www.encodeproject.org/files/ENCFF000XOP/@@download/ENCFF000XOP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XOQ bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 510099401 Michael Snyder, Stanford 92bf8b91eb90ba2a1ee4a5749ca7dfac https://www.encodeproject.org/files/ENCFF000XOQ/@@download/ENCFF000XOQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XOR bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VJU 2766140 Michael Snyder, Stanford 2f14554a0701cb7b4721eaf74b70475f https://www.encodeproject.org/files/ENCFF000XOR/@@download/ENCFF000XOR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XOS fastq reads ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 828318916 Michael Snyder, Stanford 952b880f85461c2167b38e726a8ad1e5 https://www.encodeproject.org/files/ENCFF000XOS/@@download/ENCFF000XOS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XOU fastq reads ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 823422889 Michael Snyder, Stanford cbdc06a24167eb59ddee80840f833412 https://www.encodeproject.org/files/ENCFF000XOU/@@download/ENCFF000XOU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XOW bigWig signal ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 374921465 Michael Snyder, Stanford b4bff105d4a7f759619b76c2f014b584 https://www.encodeproject.org/files/ENCFF000XOW/@@download/ENCFF000XOW.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VJU bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1038059 Michael Snyder, Stanford 731d8215e66968b517dbfc5d0900f491 https://www.encodeproject.org/files/ENCFF001VJU/@@download/ENCFF001VJU.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CTS bed narrowPeak optimal idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 450874 ENCODE Consortium Analysis Working Group 96ddd1511875610833d9f48a8d8656ed https://www.encodeproject.org/files/ENCFF002CTS/@@download/ENCFF002CTS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF678NEX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CTS 999681 ENCODE Consortium 7ec485cc40d111af1fa67a13349c1424 https://www.encodeproject.org/files/ENCFF678NEX/@@download/ENCFF678NEX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF535LHT bam unfiltered alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XOU, ENCFF643CGH 961786879 ENCODE Processing Pipeline 65fa0507eb0deb7fd8644c417ed4bad4 https://www.encodeproject.org/files/ENCFF535LHT/@@download/ENCFF535LHT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF192DDJ bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XOS, ENCFF643CGH 705399211 ENCODE Processing Pipeline 72cc9d5535e6bc1347977ee0d40e42ce https://www.encodeproject.org/files/ENCFF192DDJ/@@download/ENCFF192DDJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065BJO bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XOU, ENCFF643CGH 687498269 ENCODE Processing Pipeline 6aab52a3428274bcba032cb5b9c9b9b8 https://www.encodeproject.org/files/ENCFF065BJO/@@download/ENCFF065BJO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF487RHK bam unfiltered alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XOS, ENCFF643CGH 969829317 ENCODE Processing Pipeline ee024ca66f582c2f7bb976847b3ed5ca https://www.encodeproject.org/files/ENCFF487RHK/@@download/ENCFF487RHK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF687PGK bam unfiltered alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XOS, ENCFF807MUK 965691645 ENCODE Processing Pipeline a1a585f6fa3cbc1bfe17b23f53c8dbdd https://www.encodeproject.org/files/ENCFF687PGK/@@download/ENCFF687PGK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF993ZBP bam unfiltered alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XOU, ENCFF807MUK 957696118 ENCODE Processing Pipeline 2c8a4187805ab62df10a4b615e2c47ce https://www.encodeproject.org/files/ENCFF993ZBP/@@download/ENCFF993ZBP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF298ULI bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XOS, ENCFF807MUK 705674581 ENCODE Processing Pipeline e614d33fcd7e1eaea51dc1b148060a74 https://www.encodeproject.org/files/ENCFF298ULI/@@download/ENCFF298ULI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384OAK bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XOU, ENCFF807MUK 687835806 ENCODE Processing Pipeline 124d0578b03f76f9ebfee95a200f1110 https://www.encodeproject.org/files/ENCFF384OAK/@@download/ENCFF384OAK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF997XKC bigWig signal p-value ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF192DDJ 532326017 ENCODE Processing Pipeline 967754cff29172c1605f2687d38c0ebf https://www.encodeproject.org/files/ENCFF997XKC/@@download/ENCFF997XKC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361JRI bigWig signal p-value ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BJO, ENCFF165KZY 611315186 ENCODE Processing Pipeline 00979e757abab0485fb0890a715d255e https://www.encodeproject.org/files/ENCFF361JRI/@@download/ENCFF361JRI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF269JPO bigWig signal p-value ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BJO, ENCFF165KZY, ENCFF192DDJ 723860968 ENCODE Processing Pipeline f8fcae120cfff8d71a6f6d1e00e9600a https://www.encodeproject.org/files/ENCFF269JPO/@@download/ENCFF269JPO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF788KCM bigWig fold change over control ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BJO, ENCFF165KZY 409098424 ENCODE Processing Pipeline 3c399b048168317045c138faf1fc39e5 https://www.encodeproject.org/files/ENCFF788KCM/@@download/ENCFF788KCM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF064EXL bigWig fold change over control ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF192DDJ 429367718 ENCODE Processing Pipeline ccee9be7ab0c2a4d78cbc8964afc24ce https://www.encodeproject.org/files/ENCFF064EXL/@@download/ENCFF064EXL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF116CGF bigWig fold change over control ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BJO, ENCFF165KZY, ENCFF192DDJ 710328404 ENCODE Processing Pipeline 3f59322e43f2c0cf1dec329c41d05068 https://www.encodeproject.org/files/ENCFF116CGF/@@download/ENCFF116CGF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF238HWE bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF065BJO, ENCFF165KZY 5519096 ENCODE Processing Pipeline 5f157a7293c29a9730240008c84ce10c https://www.encodeproject.org/files/ENCFF238HWE/@@download/ENCFF238HWE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF489SBQ bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF165KZY, ENCFF192DDJ 5399724 ENCODE Processing Pipeline 7c3a44e8204b82a403f9524eed514e09 https://www.encodeproject.org/files/ENCFF489SBQ/@@download/ENCFF489SBQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF845KTS bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065BJO, ENCFF165KZY, ENCFF192DDJ 6045611 ENCODE Processing Pipeline 27666e79854c8418f83b8305100be7a5 https://www.encodeproject.org/files/ENCFF845KTS/@@download/ENCFF845KTS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF692UTP bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF489SBQ 13317693 ENCODE Processing Pipeline 298de7e93d77db0ad7612087d21cb079 https://www.encodeproject.org/files/ENCFF692UTP/@@download/ENCFF692UTP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF441YFK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF137NDG 793991 ENCODE Processing Pipeline a45d9b57f367d5d315287926e7e60ea6 https://www.encodeproject.org/files/ENCFF441YFK/@@download/ENCFF441YFK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF914PVO bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF845KTS 13479614 ENCODE Processing Pipeline d9ca386004bb5dcbd600bee4667fbe37 https://www.encodeproject.org/files/ENCFF914PVO/@@download/ENCFF914PVO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF223BEK bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF238HWE 13306769 ENCODE Processing Pipeline af6882c403942762b8bc38f989e94ed0 https://www.encodeproject.org/files/ENCFF223BEK/@@download/ENCFF223BEK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF247GXE bed narrowPeak optimal idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF238HWE, ENCFF419RSJ, ENCFF489SBQ, ENCFF845KTS 407188 ENCODE Processing Pipeline 2a0e79cffd087a329bc1ea704d1da9f4 https://www.encodeproject.org/files/ENCFF247GXE/@@download/ENCFF247GXE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF137NDG bed narrowPeak conservative idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF238HWE, ENCFF419RSJ, ENCFF489SBQ, ENCFF845KTS 374376 ENCODE Processing Pipeline 82bec8127879eb7a5ff1f9d6efd37e78 https://www.encodeproject.org/files/ENCFF137NDG/@@download/ENCFF137NDG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF324GPO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF247GXE 849476 ENCODE Processing Pipeline 373e11ca3b3dc79f87caf6d2c6844955 https://www.encodeproject.org/files/ENCFF324GPO/@@download/ENCFF324GPO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF542DWV bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF298ULI 5401411 ENCODE Processing Pipeline 61b99754c0340358135249fe7d27b24b https://www.encodeproject.org/files/ENCFF542DWV/@@download/ENCFF542DWV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF723URK bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF298ULI, ENCFF384OAK 6048517 ENCODE Processing Pipeline 1eb11d6427f49b742d2f7fd8b60600e7 https://www.encodeproject.org/files/ENCFF723URK/@@download/ENCFF723URK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF108ZVF bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF542DWV 13313668 ENCODE Processing Pipeline 633ca656fe7d83788d26436c9c1baf13 https://www.encodeproject.org/files/ENCFF108ZVF/@@download/ENCFF108ZVF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF148IOR bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287ZJM 13304731 ENCODE Processing Pipeline 6eacecb7bf9e08609599c08d21d6eb00 https://www.encodeproject.org/files/ENCFF148IOR/@@download/ENCFF148IOR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF785LTB bed narrowPeak conservative idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF287ZJM, ENCFF542DWV, ENCFF723URK 373445 ENCODE Processing Pipeline 953a6451a7712914140342846585293f https://www.encodeproject.org/files/ENCFF785LTB/@@download/ENCFF785LTB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339LAP bigWig signal p-value ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF298ULI, ENCFF384OAK 724258692 ENCODE Processing Pipeline 59cca5dcc9873d2660bf7a23d28b3b7d https://www.encodeproject.org/files/ENCFF339LAP/@@download/ENCFF339LAP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF287ZJM bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF384OAK 5518419 ENCODE Processing Pipeline 1b3202e768c3b13ce0e69e55fa167b41 https://www.encodeproject.org/files/ENCFF287ZJM/@@download/ENCFF287ZJM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339LDQ bigBed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF723URK 13476820 ENCODE Processing Pipeline adbeba07dbcc3d67099c30a4c08804f7 https://www.encodeproject.org/files/ENCFF339LDQ/@@download/ENCFF339LDQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514OYL bed narrowPeak optimal idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF287ZJM, ENCFF542DWV, ENCFF723URK 413265 ENCODE Processing Pipeline 1b3c1634fb8c0f173c3d5f60070ce2e3 https://www.encodeproject.org/files/ENCFF514OYL/@@download/ENCFF514OYL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF371TXR bigWig fold change over control ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF384OAK 411595923 ENCODE Processing Pipeline af88403f557392956e81a3cf0cd2be49 https://www.encodeproject.org/files/ENCFF371TXR/@@download/ENCFF371TXR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460WFF bigWig signal p-value ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF298ULI 528087494 ENCODE Processing Pipeline cf94e0cb60135bf556ecb8de8072f5dc https://www.encodeproject.org/files/ENCFF460WFF/@@download/ENCFF460WFF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF156ULZ bigWig fold change over control ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF298ULI 433868341 ENCODE Processing Pipeline 40cff15a689a0b8f28c0a5714bc0d166 https://www.encodeproject.org/files/ENCFF156ULZ/@@download/ENCFF156ULZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459PHJ bigWig signal p-value ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF384OAK 522331890 ENCODE Processing Pipeline 628de669519dfc6b7af6d862b556c816 https://www.encodeproject.org/files/ENCFF459PHJ/@@download/ENCFF459PHJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF086LFN bigWig fold change over control ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF298ULI, ENCFF384OAK 710661750 ENCODE Processing Pipeline e50903b021475f8e048def9ed92a2744 https://www.encodeproject.org/files/ENCFF086LFN/@@download/ENCFF086LFN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF075QRF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF514OYL 857011 ENCODE Processing Pipeline a94096ee98da2ba73e0fbb74dfe4ceb3 https://www.encodeproject.org/files/ENCFF075QRF/@@download/ENCFF075QRF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF711MIL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF785LTB 792263 ENCODE Processing Pipeline f679af97dde9251caa8251e477aa5af7 https://www.encodeproject.org/files/ENCFF711MIL/@@download/ENCFF711MIL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RLV bigWig base overlap signal ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1333588347 Vishwanath Iyer, UTA f89f08bdb4fcda3afad134d9f2c137a8 https://www.encodeproject.org/files/ENCFF000RLV/@@download/ENCFF000RLV.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RLW bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RMB 1391119208 Vishwanath Iyer, UTA 5324e783162610f17d4d7a69d81aa8c0 https://www.encodeproject.org/files/ENCFF000RLW/@@download/ENCFF000RLW.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RLX bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001URZ 1804981 Vishwanath Iyer, UTA bcbb32c1c125662c21d80dc40fd015b3 https://www.encodeproject.org/files/ENCFF000RLX/@@download/ENCFF000RLX.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RLY bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RMC 1366738083 Vishwanath Iyer, UTA 12ef6805ba5b51fa052c88b48396c6a0 https://www.encodeproject.org/files/ENCFF000RLY/@@download/ENCFF000RLY.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RLZ bigWig signal ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3554637651 Vishwanath Iyer, UTA afabd35729567419d985268315dc56ee https://www.encodeproject.org/files/ENCFF000RLZ/@@download/ENCFF000RLZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RMB fastq reads ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1331830006 Vishwanath Iyer, UTA d84f963c22e1377c29a00fbd8637f599 https://www.encodeproject.org/files/ENCFF000RMB/@@download/ENCFF000RMB.fastq.gz Illumina Genome Analyzer /files/ENCFF000RMI/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000RMC fastq reads ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1347290391 Vishwanath Iyer, UTA b1a64febac13a7b47420e15f6a95fef5 https://www.encodeproject.org/files/ENCFF000RMC/@@download/ENCFF000RMC.fastq.gz Illumina Genome Analyzer /files/ENCFF000RMI/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001URZ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1098028 Vishwanath Iyer, UTA d569f0c82f20b4f8dc5d0dd7534be445 https://www.encodeproject.org/files/ENCFF001URZ/@@download/ENCFF001URZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002DAD bed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1165527 ENCODE Consortium Analysis Working Group 3315f9544c1bfca99b7e9de28d0d5313 https://www.encodeproject.org/files/ENCFF002DAD/@@download/ENCFF002DAD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF875NMN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DAD 2383608 ENCODE Consortium 75982da8a88e58eb2f206d9d41c01541 https://www.encodeproject.org/files/ENCFF875NMN/@@download/ENCFF875NMN.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF868ENW bam unfiltered alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMB, ENCFF643CGH 1771501453 ENCODE Processing Pipeline d19e9d8cee55fe9bd85ca887312c7be0 https://www.encodeproject.org/files/ENCFF868ENW/@@download/ENCFF868ENW.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF037DQK bam unfiltered alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMC, ENCFF643CGH 1706085814 ENCODE Processing Pipeline 78ea49abe31ca9602cff5d602eda640c https://www.encodeproject.org/files/ENCFF037DQK/@@download/ENCFF037DQK.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF664APT bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMC, ENCFF643CGH 936074611 ENCODE Processing Pipeline 7a9ea0c42a84fb3116744cec771c4769 https://www.encodeproject.org/files/ENCFF664APT/@@download/ENCFF664APT.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF663XYQ bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMB, ENCFF643CGH 950082673 ENCODE Processing Pipeline 7d782f6b0155990008aa002e97d50843 https://www.encodeproject.org/files/ENCFF663XYQ/@@download/ENCFF663XYQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF970EQP bam unfiltered alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMC, ENCFF807MUK 1703944305 ENCODE Processing Pipeline 38107479ce251b716b6c19fb95dfa067 https://www.encodeproject.org/files/ENCFF970EQP/@@download/ENCFF970EQP.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF905MLU bam unfiltered alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMB, ENCFF807MUK 1768650912 ENCODE Processing Pipeline 2c8b503150c8145a13cd340a6c74f06a https://www.encodeproject.org/files/ENCFF905MLU/@@download/ENCFF905MLU.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF939MPS bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMB, ENCFF807MUK 950291014 ENCODE Processing Pipeline 9af0884e680011890ae8b41653439a02 https://www.encodeproject.org/files/ENCFF939MPS/@@download/ENCFF939MPS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF021FUK bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMC, ENCFF807MUK 936295625 ENCODE Processing Pipeline a173820dfab27c49a8c32623a5bc0eeb https://www.encodeproject.org/files/ENCFF021FUK/@@download/ENCFF021FUK.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF378WWO bigWig signal p-value ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF663XYQ, ENCFF810XBE 625851088 ENCODE Processing Pipeline e6a5c67dfe3ed7fed87b14c074e8d2df https://www.encodeproject.org/files/ENCFF378WWO/@@download/ENCFF378WWO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF050NXL bigWig signal p-value ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF664APT, ENCFF810XBE 572603725 ENCODE Processing Pipeline 3114f765fe676e5042547fa2444b54b8 https://www.encodeproject.org/files/ENCFF050NXL/@@download/ENCFF050NXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF467BYF bigWig signal p-value ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF663XYQ, ENCFF664APT, ENCFF810XBE 621982090 ENCODE Processing Pipeline ca1041db15b4fbb15e3e9df68b1d2455 https://www.encodeproject.org/files/ENCFF467BYF/@@download/ENCFF467BYF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF538HPA bigWig fold change over control ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF663XYQ, ENCFF810XBE 455216483 ENCODE Processing Pipeline eb9ab0f9ddc04a2e22792dfa31766b1b https://www.encodeproject.org/files/ENCFF538HPA/@@download/ENCFF538HPA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF750RAT bigWig fold change over control ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF664APT, ENCFF810XBE 457389279 ENCODE Processing Pipeline c0901cb0f709fff6ae676cc882c1c299 https://www.encodeproject.org/files/ENCFF750RAT/@@download/ENCFF750RAT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF344MYT bigWig fold change over control ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF663XYQ, ENCFF664APT, ENCFF810XBE 716077690 ENCODE Processing Pipeline 56c9a23859579048d827b766b03b3e4c https://www.encodeproject.org/files/ENCFF344MYT/@@download/ENCFF344MYT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF633TEW bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF663XYQ, ENCFF810XBE 5297138 ENCODE Processing Pipeline e78d3948f97ad5dd290c5e1f0b211e7a https://www.encodeproject.org/files/ENCFF633TEW/@@download/ENCFF633TEW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF537OSB bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF664APT, ENCFF810XBE 5502546 ENCODE Processing Pipeline e0b066ceb62927796903cc9483f6e032 https://www.encodeproject.org/files/ENCFF537OSB/@@download/ENCFF537OSB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF935ZMQ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF663XYQ, ENCFF664APT, ENCFF810XBE 6177696 ENCODE Processing Pipeline 91467fd7ef3a9ac653b15c769d5e42ed https://www.encodeproject.org/files/ENCFF935ZMQ/@@download/ENCFF935ZMQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF443SIV bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF633TEW 11581867 ENCODE Processing Pipeline 06c6e9835ce8d5b574ffa0f36f778978 https://www.encodeproject.org/files/ENCFF443SIV/@@download/ENCFF443SIV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF532EFP bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF537OSB 11712786 ENCODE Processing Pipeline f6e5b936fc07b24e7828e4730ead8deb https://www.encodeproject.org/files/ENCFF532EFP/@@download/ENCFF532EFP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF858DUH bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF935ZMQ 11839617 ENCODE Processing Pipeline 0af3326ba55b0c1931f79dc7ffdd1a05 https://www.encodeproject.org/files/ENCFF858DUH/@@download/ENCFF858DUH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF248QLS bed narrowPeak conservative idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF537OSB, ENCFF633TEW, ENCFF935ZMQ 575276 ENCODE Processing Pipeline 5e382901f5d64a405f724190289590a6 https://www.encodeproject.org/files/ENCFF248QLS/@@download/ENCFF248QLS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF563UGO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248QLS 1125383 ENCODE Processing Pipeline d385e888095c0f51bafa80d67690853f https://www.encodeproject.org/files/ENCFF563UGO/@@download/ENCFF563UGO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF535MZG bed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF537OSB, ENCFF633TEW, ENCFF935ZMQ 694141 ENCODE Processing Pipeline 07781d6d01a89705d9608fad5b64c0f6 https://www.encodeproject.org/files/ENCFF535MZG/@@download/ENCFF535MZG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF288RFC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF535MZG 1295135 ENCODE Processing Pipeline 9316f6cb57d488905bc1408c588ecd7b https://www.encodeproject.org/files/ENCFF288RFC/@@download/ENCFF288RFC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF970VZO bigWig signal p-value ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF020BND, ENCFF021FUK 549967555 ENCODE Processing Pipeline 8663e79bb88acb720f1c2b2ae25e91ef https://www.encodeproject.org/files/ENCFF970VZO/@@download/ENCFF970VZO.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF209QCA bigWig signal p-value ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF020BND, ENCFF021FUK, ENCFF939MPS 621975639 ENCODE Processing Pipeline b222dfdf23b31fb952a80db666b66c1c https://www.encodeproject.org/files/ENCFF209QCA/@@download/ENCFF209QCA.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF984XUV bigWig fold change over control ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF020BND, ENCFF021FUK, ENCFF939MPS 719435770 ENCODE Processing Pipeline a887b018807fde0aadea222549a01021 https://www.encodeproject.org/files/ENCFF984XUV/@@download/ENCFF984XUV.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF556LXY bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF537TSK 11572915 ENCODE Processing Pipeline 300e63f12fff7c686d96f432fcb8c339 https://www.encodeproject.org/files/ENCFF556LXY/@@download/ENCFF556LXY.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF212QCX bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF290ZCZ 11711293 ENCODE Processing Pipeline 678a5e79ae851ad8c670876e903fc982 https://www.encodeproject.org/files/ENCFF212QCX/@@download/ENCFF212QCX.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF933NQN bed narrowPeak conservative idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF290ZCZ, ENCFF537TSK, ENCFF865ANK 574430 ENCODE Processing Pipeline 8758497c4ec10a068b275af3045f8bc1 https://www.encodeproject.org/files/ENCFF933NQN/@@download/ENCFF933NQN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF537TSK bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF020BND, ENCFF939MPS 5297898 ENCODE Processing Pipeline 6863296bfc38b4b4b59c9e04a0b38a0d https://www.encodeproject.org/files/ENCFF537TSK/@@download/ENCFF537TSK.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF290ZCZ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF020BND, ENCFF021FUK 5501934 ENCODE Processing Pipeline 718d5d96ee866e35d369284b0441b07e https://www.encodeproject.org/files/ENCFF290ZCZ/@@download/ENCFF290ZCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF359NKY bigBed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF865ANK 11837003 ENCODE Processing Pipeline 953ef6d7845bd4f86083f6196d555565 https://www.encodeproject.org/files/ENCFF359NKY/@@download/ENCFF359NKY.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF317BFO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF933NQN 1125001 ENCODE Processing Pipeline f038773f9c4104bb77073498dd358395 https://www.encodeproject.org/files/ENCFF317BFO/@@download/ENCFF317BFO.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF300IYQ bed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF290ZCZ, ENCFF537TSK, ENCFF865ANK 693513 ENCODE Processing Pipeline 654e0d3526208ce14b7a33232e365a5a https://www.encodeproject.org/files/ENCFF300IYQ/@@download/ENCFF300IYQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF293BQP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF300IYQ 1292156 ENCODE Processing Pipeline 37e47e13017b4cc4ba7ee6072ebd52f0 https://www.encodeproject.org/files/ENCFF293BQP/@@download/ENCFF293BQP.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF348XPK bigWig fold change over control ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF020BND, ENCFF021FUK 459251353 ENCODE Processing Pipeline f407bfd18e0ff8c87c45247a5947ccaa https://www.encodeproject.org/files/ENCFF348XPK/@@download/ENCFF348XPK.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF865ANK bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF020BND, ENCFF021FUK, ENCFF939MPS 6177479 ENCODE Processing Pipeline e88ea5542059a96bab2e856e44e204b3 https://www.encodeproject.org/files/ENCFF865ANK/@@download/ENCFF865ANK.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF574KKK bigWig signal p-value ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF020BND, ENCFF939MPS 596960801 ENCODE Processing Pipeline fa542a5035cd7c89c1b4619681541ef1 https://www.encodeproject.org/files/ENCFF574KKK/@@download/ENCFF574KKK.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF406LYS bigWig fold change over control ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF020BND, ENCFF939MPS 464623548 ENCODE Processing Pipeline 3212545d8fbba9e1893d1598624c4191 https://www.encodeproject.org/files/ENCFF406LYS/@@download/ENCFF406LYS.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000WZL bam alignments ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WZR 677812960 Michael Snyder, Stanford a9c450132aa47e66f949c537afe2d57e https://www.encodeproject.org/files/ENCFF000WZL/@@download/ENCFF000WZL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZM bam alignments ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WZT 646633221 Michael Snyder, Stanford 663e81060e0345715bdfc9468245bf5a https://www.encodeproject.org/files/ENCFF000WZM/@@download/ENCFF000WZM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZN bigBed narrowPeak peaks ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHS 326265 Michael Snyder, Stanford edde54f25becd2b494dae4c3d41c0cc3 https://www.encodeproject.org/files/ENCFF000WZN/@@download/ENCFF000WZN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZO bam alignments ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WZZ 753480212 Michael Snyder, Stanford e65a62f2bb472802742f51be4e99c07a https://www.encodeproject.org/files/ENCFF000WZO/@@download/ENCFF000WZO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZR fastq reads ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 495842330 Michael Snyder, Stanford c7e71b45eafd85a35deb043db35f5051 https://www.encodeproject.org/files/ENCFF000WZR/@@download/ENCFF000WZR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIG/ released biological replicates with identical biosample insufficient read length ENCFF000WZS bigWig signal ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 466196847 Michael Snyder, Stanford ca2a24c55b524e57bb8678d5d10fbd4e https://www.encodeproject.org/files/ENCFF000WZS/@@download/ENCFF000WZS.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WZT fastq reads ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 480704394 Michael Snyder, Stanford d00277862b668817467b215cafbe1653 https://www.encodeproject.org/files/ENCFF000WZT/@@download/ENCFF000WZT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIH/ released biological replicates with identical biosample insufficient read length ENCFF000WZZ fastq reads ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 564079048 Michael Snyder, Stanford 9853a52c4e6ec2a8ce36b8c20859b943 https://www.encodeproject.org/files/ENCFF000WZZ/@@download/ENCFF000WZZ.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VHS bed narrowPeak peaks ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 137066 Michael Snyder, Stanford 9d9abd6a6f0d763c85e6b1982fb70cac https://www.encodeproject.org/files/ENCFF001VHS/@@download/ENCFF001VHS.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CRT bed narrowPeak optimal idr thresholded peaks ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 221854 ENCODE Consortium Analysis Working Group ff8534ffa69559b8992d93fd95368893 https://www.encodeproject.org/files/ENCFF002CRT/@@download/ENCFF002CRT.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF284WKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRT 589534 ENCODE Consortium 06f40f3df6a4da78f38bc07e9c35cc33 https://www.encodeproject.org/files/ENCFF284WKZ/@@download/ENCFF284WKZ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WRX bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WSW 465954351 Michael Snyder, Stanford e0329a24f59a98671957b8a6c748f7f7 https://www.encodeproject.org/files/ENCFF000WRX/@@download/ENCFF000WRX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRY bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WSV 505591471 Michael Snyder, Stanford a53d4481f040defd64a8c8b9a6db85a5 https://www.encodeproject.org/files/ENCFF000WRY/@@download/ENCFF000WRY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRZ bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGS 734092 Michael Snyder, Stanford 5b4daf66fc8ef362bed0e44c3768019c https://www.encodeproject.org/files/ENCFF000WRZ/@@download/ENCFF000WRZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSA bigWig signal ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 369637707 Michael Snyder, Stanford 70d0c96e2bebb16e4dca1537f7e8cf55 https://www.encodeproject.org/files/ENCFF000WSA/@@download/ENCFF000WSA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WSV fastq reads ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1034450451 Michael Snyder, Stanford 6562a381b8a579f96f4c1ed645039156 https://www.encodeproject.org/files/ENCFF000WSV/@@download/ENCFF000WSV.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSW fastq reads ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1028823880 Michael Snyder, Stanford b4830d6b7b422c61356dddb284300381 https://www.encodeproject.org/files/ENCFF000WSW/@@download/ENCFF000WSW.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VGS bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 410159 Michael Snyder, Stanford 342d7657f140fb944b338757c7ce086d https://www.encodeproject.org/files/ENCFF001VGS/@@download/ENCFF001VGS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CQU bed narrowPeak optimal idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 58360 ENCODE Consortium Analysis Working Group eee0c531e65f9eb949a28b0641f87ffa https://www.encodeproject.org/files/ENCFF002CQU/@@download/ENCFF002CQU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF724POI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQU 221113 ENCODE Consortium 70139b835f3ff8c08e23e406e6418911 https://www.encodeproject.org/files/ENCFF724POI/@@download/ENCFF724POI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700FWX bam unfiltered alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WSV, ENCFF643CGH 1229377651 ENCODE Processing Pipeline 14bbef640a0a2c6da058d102a02b3190 https://www.encodeproject.org/files/ENCFF700FWX/@@download/ENCFF700FWX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF050VGU bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WSV, ENCFF643CGH 744060459 ENCODE Processing Pipeline 5d01e89371387136c4c91c923f35d937 https://www.encodeproject.org/files/ENCFF050VGU/@@download/ENCFF050VGU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF233HJU bam unfiltered alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WSW, ENCFF643CGH 1211488851 ENCODE Processing Pipeline 332144d8bbbd31ce1fac9b4d868f75e7 https://www.encodeproject.org/files/ENCFF233HJU/@@download/ENCFF233HJU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864PHP bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WSW, ENCFF643CGH 682521882 ENCODE Processing Pipeline c895563a82e997d87d588e4ffc59f42f https://www.encodeproject.org/files/ENCFF864PHP/@@download/ENCFF864PHP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF705WDA bam unfiltered alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WSW, ENCFF807MUK 1206534580 ENCODE Processing Pipeline 538ee276c764e5deb69fb3c068e0585d https://www.encodeproject.org/files/ENCFF705WDA/@@download/ENCFF705WDA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF964HQE bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WSW, ENCFF807MUK 682893031 ENCODE Processing Pipeline 1f4df7e0b3ea949f59091f4cf7fcbf04 https://www.encodeproject.org/files/ENCFF964HQE/@@download/ENCFF964HQE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884JYB bam unfiltered alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WSV, ENCFF807MUK 1224095232 ENCODE Processing Pipeline f80eaa869a36c61738e722f64d3f65e8 https://www.encodeproject.org/files/ENCFF884JYB/@@download/ENCFF884JYB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF113EJS bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WSV, ENCFF807MUK 744434890 ENCODE Processing Pipeline ee2a30692166c87700ed058923c4045e https://www.encodeproject.org/files/ENCFF113EJS/@@download/ENCFF113EJS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF417OBC bigWig fold change over control ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF864PHP 419201742 ENCODE Processing Pipeline bf4e452e1cc3ccd205ca8377e46e852f https://www.encodeproject.org/files/ENCFF417OBC/@@download/ENCFF417OBC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF004INU bigWig signal p-value ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF050VGU 557828772 ENCODE Processing Pipeline b374bc140f55807a994c924315902390 https://www.encodeproject.org/files/ENCFF004INU/@@download/ENCFF004INU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF922HFX bigWig signal p-value ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF864PHP 496773245 ENCODE Processing Pipeline b234585c7948484ff9fcec6f5bb20822 https://www.encodeproject.org/files/ENCFF922HFX/@@download/ENCFF922HFX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF625MXI bigWig signal p-value ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF050VGU, ENCFF864PHP 744996479 ENCODE Processing Pipeline 43704cc69312f648cb850f93ac8e269b https://www.encodeproject.org/files/ENCFF625MXI/@@download/ENCFF625MXI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459HBP bigWig fold change over control ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF050VGU 450865468 ENCODE Processing Pipeline a6bb287de30336481f6545f9cff2cb00 https://www.encodeproject.org/files/ENCFF459HBP/@@download/ENCFF459HBP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF458TTS bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059JHF 11495644 ENCODE Processing Pipeline ee882864b7f42d4cc0ad3a7f74f478a4 https://www.encodeproject.org/files/ENCFF458TTS/@@download/ENCFF458TTS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF210RRJ bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF864PHP 4169911 ENCODE Processing Pipeline a86e2f119f6a2e30ff312981309bae25 https://www.encodeproject.org/files/ENCFF210RRJ/@@download/ENCFF210RRJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932XXB bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF050VGU 3934569 ENCODE Processing Pipeline 7ab9ccba8529babf7c6c36ae5e005f88 https://www.encodeproject.org/files/ENCFF932XXB/@@download/ENCFF932XXB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF815WEI bigWig fold change over control ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF050VGU, ENCFF864PHP 719890935 ENCODE Processing Pipeline c7aaaacafe9ce76043e8ec7112f29572 https://www.encodeproject.org/files/ENCFF815WEI/@@download/ENCFF815WEI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF059JHF bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF050VGU, ENCFF864PHP 4629589 ENCODE Processing Pipeline b4a73a2b4e7835bbc01c1544de756716 https://www.encodeproject.org/files/ENCFF059JHF/@@download/ENCFF059JHF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF762EYO bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF210RRJ 10880896 ENCODE Processing Pipeline 1bd570dcb97b0593b112d1cc4a214f5b https://www.encodeproject.org/files/ENCFF762EYO/@@download/ENCFF762EYO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF719XRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF312GEN 120021 ENCODE Processing Pipeline 0fbadf5fbb36e1ab56973a3b3ff7b6d7 https://www.encodeproject.org/files/ENCFF719XRQ/@@download/ENCFF719XRQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF678SSA bed narrowPeak conservative idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059JHF, ENCFF210RRJ, ENCFF419RSJ, ENCFF932XXB 47529 ENCODE Processing Pipeline f285ec02e1dbe642f4a6d893d526b345 https://www.encodeproject.org/files/ENCFF678SSA/@@download/ENCFF678SSA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF156UJP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF678SSA 115256 ENCODE Processing Pipeline 4fb291443fe734fcb94471594676feaf https://www.encodeproject.org/files/ENCFF156UJP/@@download/ENCFF156UJP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF663GIR bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF932XXB 10648179 ENCODE Processing Pipeline a9d9f9f5df7c9311e669dd185a432204 https://www.encodeproject.org/files/ENCFF663GIR/@@download/ENCFF663GIR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF312GEN bed narrowPeak optimal idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059JHF, ENCFF210RRJ, ENCFF419RSJ, ENCFF932XXB 51395 ENCODE Processing Pipeline 5554e274614e0bd6f8829b17f0070219 https://www.encodeproject.org/files/ENCFF312GEN/@@download/ENCFF312GEN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF654ERB bigWig fold change over control ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113EJS, ENCFF599MVB, ENCFF964HQE 735435646 ENCODE Processing Pipeline a4b5869544c74cd8bda5f767a79b6cd9 https://www.encodeproject.org/files/ENCFF654ERB/@@download/ENCFF654ERB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF142VIU bigWig signal p-value ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113EJS, ENCFF599MVB, ENCFF964HQE 768408575 ENCODE Processing Pipeline 1c0d01d08f1b3f5d3bd0b680ec03566c https://www.encodeproject.org/files/ENCFF142VIU/@@download/ENCFF142VIU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF644AIL bigWig signal p-value ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF964HQE 629119150 ENCODE Processing Pipeline 67517d33ac74bf4d48ffd543eed5a528 https://www.encodeproject.org/files/ENCFF644AIL/@@download/ENCFF644AIL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF631QLF bed narrowPeak conservative idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF115XCV, ENCFF622NKF, ENCFF961BTT 46935 ENCODE Processing Pipeline 187a675096e82960e8bb93eff3d3ee84 https://www.encodeproject.org/files/ENCFF631QLF/@@download/ENCFF631QLF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF313FAN bigWig signal p-value ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113EJS, ENCFF599MVB 574761397 ENCODE Processing Pipeline a69fc97e6bc8587a205ed7824a754111 https://www.encodeproject.org/files/ENCFF313FAN/@@download/ENCFF313FAN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF356VCM bigWig fold change over control ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113EJS, ENCFF599MVB 451798649 ENCODE Processing Pipeline 1ef95c7474809a825531cca7b600421b https://www.encodeproject.org/files/ENCFF356VCM/@@download/ENCFF356VCM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF715QOB bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF961BTT 10637841 ENCODE Processing Pipeline 31e9b426c9b088595d5a7ecd6ddc62b5 https://www.encodeproject.org/files/ENCFF715QOB/@@download/ENCFF715QOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF876HQX bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF631QLF 114059 ENCODE Processing Pipeline a162f40afe3fa5242349f66c921f6b50 https://www.encodeproject.org/files/ENCFF876HQX/@@download/ENCFF876HQX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF480JEP bigWig fold change over control ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF964HQE 403860315 ENCODE Processing Pipeline 119d64b474f3b633cd14de45ab567f3e https://www.encodeproject.org/files/ENCFF480JEP/@@download/ENCFF480JEP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF129ENY bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF622NKF 10875990 ENCODE Processing Pipeline fe98fcde2def87d2625f07d7aa5cb294 https://www.encodeproject.org/files/ENCFF129ENY/@@download/ENCFF129ENY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF961BTT bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113EJS, ENCFF599MVB 3931940 ENCODE Processing Pipeline 5d522ae4533452d1ed414a2fe30cb6d0 https://www.encodeproject.org/files/ENCFF961BTT/@@download/ENCFF961BTT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514RME bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF402ELS 116204 ENCODE Processing Pipeline ccb6af0c1d22c64a1a694a9a0d575d08 https://www.encodeproject.org/files/ENCFF514RME/@@download/ENCFF514RME.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF622NKF bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF964HQE 4172041 ENCODE Processing Pipeline 42940b150816af7fe5619431c3f037bb https://www.encodeproject.org/files/ENCFF622NKF/@@download/ENCFF622NKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF402ELS bed narrowPeak optimal idr thresholded peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF115XCV, ENCFF622NKF, ENCFF961BTT 48603 ENCODE Processing Pipeline 1840846ef482a55692abf6313aec1279 https://www.encodeproject.org/files/ENCFF402ELS/@@download/ENCFF402ELS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF115XCV bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113EJS, ENCFF599MVB, ENCFF964HQE 4700926 ENCODE Processing Pipeline 3c68387193f9360232fd1676f9f276f1 https://www.encodeproject.org/files/ENCFF115XCV/@@download/ENCFF115XCV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF539JDE bigBed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF115XCV 11509749 ENCODE Processing Pipeline 762e9ee3085e5fa7571f8c8b3b219100 https://www.encodeproject.org/files/ENCFF539JDE/@@download/ENCFF539JDE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVU bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WWJ 553894506 Michael Snyder, Stanford d8ce64c6cf3607dbb5dbc250e05d28b9 https://www.encodeproject.org/files/ENCFF000WVU/@@download/ENCFF000WVU.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVV bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHG 1075030 Michael Snyder, Stanford 4ab811bb00edf4f9359b6c94c4cb74b1 https://www.encodeproject.org/files/ENCFF000WVV/@@download/ENCFF000WVV.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVW bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WWS 663377119 Michael Snyder, Stanford bb9370ccb054a5c0310a9c7a4eab8b81 https://www.encodeproject.org/files/ENCFF000WVW/@@download/ENCFF000WVW.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVY bigWig signal ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 451400660 Michael Snyder, Stanford ec643b61c3b831c8b748fc3dde64ef3b https://www.encodeproject.org/files/ENCFF000WVY/@@download/ENCFF000WVY.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WWJ fastq reads ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1081144013 Michael Snyder, Stanford e36bba064b556c19c1b7c717243131c1 https://www.encodeproject.org/files/ENCFF000WWJ/@@download/ENCFF000WWJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WWS fastq reads ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1409499509 Michael Snyder, Stanford 8e44c0404996538bab75d71c5c29c010 https://www.encodeproject.org/files/ENCFF000WWS/@@download/ENCFF000WWS.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VHG bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 534315 Michael Snyder, Stanford 19ab09860fc37ade9f4232575a6de034 https://www.encodeproject.org/files/ENCFF001VHG/@@download/ENCFF001VHG.bed.gz hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CRI bed narrowPeak optimal idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 179232 ENCODE Consortium Analysis Working Group 94400560a37b1ac2bf50a0a09a410928 https://www.encodeproject.org/files/ENCFF002CRI/@@download/ENCFF002CRI.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF430AAA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRI 450852 ENCODE Consortium 22792b8c7031598b42e8ba44c855e0e2 https://www.encodeproject.org/files/ENCFF430AAA/@@download/ENCFF430AAA.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF992YZZ bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWJ, ENCFF643CGH 900594018 ENCODE Processing Pipeline 8b277850d6f15becee8202bfb8e623f8 https://www.encodeproject.org/files/ENCFF992YZZ/@@download/ENCFF992YZZ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF231PNQ bam unfiltered alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWJ, ENCFF643CGH 1328390613 ENCODE Processing Pipeline 048471719745177df1fbb6c0afd75db3 https://www.encodeproject.org/files/ENCFF231PNQ/@@download/ENCFF231PNQ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF911KLJ bam unfiltered alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWS, ENCFF643CGH 1719528014 ENCODE Processing Pipeline 9286259781ff8e901ae7240c1766d1a0 https://www.encodeproject.org/files/ENCFF911KLJ/@@download/ENCFF911KLJ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF420VTB bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWS, ENCFF643CGH 1120039866 ENCODE Processing Pipeline bcc28a848b39aadddd5b87b6b7495ba8 https://www.encodeproject.org/files/ENCFF420VTB/@@download/ENCFF420VTB.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF984ATR bam unfiltered alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWJ, ENCFF807MUK 1322444269 ENCODE Processing Pipeline 66ce5a93417dfa54fdaab023522530fe https://www.encodeproject.org/files/ENCFF984ATR/@@download/ENCFF984ATR.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF971NYX bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWJ, ENCFF807MUK 900987988 ENCODE Processing Pipeline 86826c8fce21232b58de9b85857cd0f5 https://www.encodeproject.org/files/ENCFF971NYX/@@download/ENCFF971NYX.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF106CTN bam unfiltered alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWS, ENCFF807MUK 1711686192 ENCODE Processing Pipeline c09afe0a964fdcd70531d1ab0315f4bb https://www.encodeproject.org/files/ENCFF106CTN/@@download/ENCFF106CTN.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF613XRK bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWS, ENCFF807MUK 1120425154 ENCODE Processing Pipeline 9244823d0b1749babc63c2eb08e93729 https://www.encodeproject.org/files/ENCFF613XRK/@@download/ENCFF613XRK.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF413HYI bigWig signal p-value ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420VTB, ENCFF513EWK, ENCFF992YZZ 736514327 ENCODE Processing Pipeline 5828b2274e606c7995fc53bea0eb2d5d https://www.encodeproject.org/files/ENCFF413HYI/@@download/ENCFF413HYI.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF372HIM bigWig fold change over control ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF992YZZ 507384393 ENCODE Processing Pipeline c938b2cb347246b58b9e89668738ac7a https://www.encodeproject.org/files/ENCFF372HIM/@@download/ENCFF372HIM.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF559EVE bigWig signal p-value ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF992YZZ 687050574 ENCODE Processing Pipeline 1b2f96594ffda0417f023f0546621e8e https://www.encodeproject.org/files/ENCFF559EVE/@@download/ENCFF559EVE.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF342FID bigWig signal p-value ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420VTB, ENCFF513EWK 657645323 ENCODE Processing Pipeline cc9f73daa3b2e1fe92c51a8b57cec016 https://www.encodeproject.org/files/ENCFF342FID/@@download/ENCFF342FID.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF757FPX bigWig fold change over control ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420VTB, ENCFF513EWK, ENCFF992YZZ 904066402 ENCODE Processing Pipeline 6fe5895b17280287623ae8f72a3f47d6 https://www.encodeproject.org/files/ENCFF757FPX/@@download/ENCFF757FPX.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF279MOU bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF992YZZ 4466588 ENCODE Processing Pipeline 51497c9cdc2597b178325e5ba0b7ed55 https://www.encodeproject.org/files/ENCFF279MOU/@@download/ENCFF279MOU.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF654VMB bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF951LZS 11623582 ENCODE Processing Pipeline 88aa7d5ba012668bf99585c599a5305c https://www.encodeproject.org/files/ENCFF654VMB/@@download/ENCFF654VMB.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF870KXV bigWig fold change over control ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420VTB, ENCFF513EWK 591328220 ENCODE Processing Pipeline 431c9d38a0c6e388c63ba57781f207d3 https://www.encodeproject.org/files/ENCFF870KXV/@@download/ENCFF870KXV.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF454ACQ bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF279MOU 11130216 ENCODE Processing Pipeline 66897c83dab0ce0c86bc009ba4cf6a87 https://www.encodeproject.org/files/ENCFF454ACQ/@@download/ENCFF454ACQ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF710JBU bed narrowPeak optimal idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF279MOU, ENCFF400CNF, ENCFF419RSJ, ENCFF951LZS 150440 ENCODE Processing Pipeline 601512de9a77ef0469c0de93165675d7 https://www.encodeproject.org/files/ENCFF710JBU/@@download/ENCFF710JBU.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF264MBM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710JBU 293558 ENCODE Processing Pipeline 90b6bbf9a03c8b4d02fbc01e2608bd81 https://www.encodeproject.org/files/ENCFF264MBM/@@download/ENCFF264MBM.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF400CNF bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420VTB, ENCFF513EWK 4938565 ENCODE Processing Pipeline 2b82b456a0d2e6e9afae464bb6bf51c9 https://www.encodeproject.org/files/ENCFF400CNF/@@download/ENCFF400CNF.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF614OEO bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF400CNF 11391308 ENCODE Processing Pipeline e402f4cdcb7b7dd921f7e2fb6c368a60 https://www.encodeproject.org/files/ENCFF614OEO/@@download/ENCFF614OEO.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF951LZS bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420VTB, ENCFF513EWK, ENCFF992YZZ 5596652 ENCODE Processing Pipeline b9bb46b5fd2bad04df62d2a44b2d28b3 https://www.encodeproject.org/files/ENCFF951LZS/@@download/ENCFF951LZS.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF883VXZ bed narrowPeak conservative idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF279MOU, ENCFF400CNF, ENCFF419RSJ, ENCFF951LZS 147662 ENCODE Processing Pipeline 09259814b1346f9529981b2dd08aff83 https://www.encodeproject.org/files/ENCFF883VXZ/@@download/ENCFF883VXZ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF532BSF bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF883VXZ 289898 ENCODE Processing Pipeline d532ad8132a6abc4fb1cf57e76b57027 https://www.encodeproject.org/files/ENCFF532BSF/@@download/ENCFF532BSF.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF090YZH bigWig fold change over control ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF971NYX 507692453 ENCODE Processing Pipeline 0c56d1d86ec9f65f560ebb2ef1a12047 https://www.encodeproject.org/files/ENCFF090YZH/@@download/ENCFF090YZH.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF162XZW bigWig signal p-value ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF613XRK 630095804 ENCODE Processing Pipeline 1a52b75973ded2558e86162fa4dca363 https://www.encodeproject.org/files/ENCFF162XZW/@@download/ENCFF162XZW.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF839JQL bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF264NVN 11622185 ENCODE Processing Pipeline 9d91b9d3ef6785a2d65397730fd97452 https://www.encodeproject.org/files/ENCFF839JQL/@@download/ENCFF839JQL.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF824WAK bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF749OBU 296442 ENCODE Processing Pipeline c5437bebacb3b301942d4a7ae6da312a https://www.encodeproject.org/files/ENCFF824WAK/@@download/ENCFF824WAK.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF647SDK bigWig signal p-value ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF971NYX 693426876 ENCODE Processing Pipeline 68eeee6d93c446050cc1ccadf51b007b https://www.encodeproject.org/files/ENCFF647SDK/@@download/ENCFF647SDK.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF523QRS bed narrowPeak conservative idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF019JVF, ENCFF264NVN, ENCFF846OWC 146500 ENCODE Processing Pipeline 9733c264ca27c92feb37b0c303c576a4 https://www.encodeproject.org/files/ENCFF523QRS/@@download/ENCFF523QRS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF264NVN bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF599MVB, ENCFF613XRK, ENCFF971NYX 5600344 ENCODE Processing Pipeline 39ea98ea14cd68e6e5cd9771e67f3906 https://www.encodeproject.org/files/ENCFF264NVN/@@download/ENCFF264NVN.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF696WIC bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF523QRS 287415 ENCODE Processing Pipeline 6e048794a918b0723a73fcaabb69529a https://www.encodeproject.org/files/ENCFF696WIC/@@download/ENCFF696WIC.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF776LMC bigWig signal p-value ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF599MVB, ENCFF613XRK, ENCFF971NYX 737027791 ENCODE Processing Pipeline e00a2072ccd446798ce78600a248637d https://www.encodeproject.org/files/ENCFF776LMC/@@download/ENCFF776LMC.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF352ANT bigWig fold change over control ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF613XRK 603956891 ENCODE Processing Pipeline 8627764bfdf36eef102b261afaa1f119 https://www.encodeproject.org/files/ENCFF352ANT/@@download/ENCFF352ANT.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF019JVF bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF971NYX 4469634 ENCODE Processing Pipeline a5cb3c39a172f56aba04526695360eb3 https://www.encodeproject.org/files/ENCFF019JVF/@@download/ENCFF019JVF.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF749OBU bed narrowPeak optimal idr thresholded peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF019JVF, ENCFF264NVN, ENCFF846OWC 152905 ENCODE Processing Pipeline 4b435ca82f521bf3df4bfd0f305c0d06 https://www.encodeproject.org/files/ENCFF749OBU/@@download/ENCFF749OBU.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF846OWC bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF613XRK 4757605 ENCODE Processing Pipeline ed6a140c69c05c75efb8ca7fcab3a261 https://www.encodeproject.org/files/ENCFF846OWC/@@download/ENCFF846OWC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF770AOL bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF019JVF 11130453 ENCODE Processing Pipeline fc0872adbc4d179b7a261c6049f64997 https://www.encodeproject.org/files/ENCFF770AOL/@@download/ENCFF770AOL.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF461OOH bigWig fold change over control ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF599MVB, ENCFF613XRK, ENCFF971NYX 912156831 ENCODE Processing Pipeline 17879423a1baaac670202a9efcd96aa6 https://www.encodeproject.org/files/ENCFF461OOH/@@download/ENCFF461OOH.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF395KVF bigBed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF846OWC 11326146 ENCODE Processing Pipeline c29ade875059cdb618ffe0e3ddb9513a https://www.encodeproject.org/files/ENCFF395KVF/@@download/ENCFF395KVF.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000QSM bam alignments ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QTA 807451601 Richard Myers, HAIB fe3a4f2f245abdc337e016795b6a8ba9 https://www.encodeproject.org/files/ENCFF000QSM/@@download/ENCFF000QSM.bam hg19 released biological replicates with identical biosample ENCFF000QSO bigBed broadPeak peaks ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UOD 134837 Richard Myers, HAIB 361caef36c1f868a0c68797158ca9669 https://www.encodeproject.org/files/ENCFF000QSO/@@download/ENCFF000QSO.bigBed hg19 released biological replicates with identical biosample ENCFF000QSP bam alignments ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QTD 1110408651 Richard Myers, HAIB 5ea30b7ce394e924eaeb7bdd707b5b7c https://www.encodeproject.org/files/ENCFF000QSP/@@download/ENCFF000QSP.bam hg19 released biological replicates with identical biosample ENCFF000QSQ bigBed broadPeak peaks ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UOE 168138 Richard Myers, HAIB c7991fee9a6fd58cff24c6d218e779de https://www.encodeproject.org/files/ENCFF000QSQ/@@download/ENCFF000QSQ.bigBed hg19 released biological replicates with identical biosample ENCFF000QSS bigWig raw signal ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 95324465 Richard Myers, HAIB 50d60a680b581f69506777670840570b https://www.encodeproject.org/files/ENCFF000QSS/@@download/ENCFF000QSS.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QSU bigWig raw signal ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 115881295 Richard Myers, HAIB 304795f6f9ff6b0238fb1006409ed34c https://www.encodeproject.org/files/ENCFF000QSU/@@download/ENCFF000QSU.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QTA fastq reads ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 827272055 Richard Myers, HAIB c50ccb1637667555179cc15fea9808e4 https://www.encodeproject.org/files/ENCFF000QTA/@@download/ENCFF000QTA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QUI/ released biological replicates with identical biosample ENCFF000QTD fastq reads ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1138489986 Richard Myers, HAIB 946a9c5efdbf81b96461be75f5a6dacb https://www.encodeproject.org/files/ENCFF000QTD/@@download/ENCFF000QTD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QUI/ released biological replicates with identical biosample ENCFF001UOD bed broadPeak peaks ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 49454 Richard Myers, HAIB b636055a15f942a63712583149a26bef https://www.encodeproject.org/files/ENCFF001UOD/@@download/ENCFF001UOD.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UOE bed broadPeak peaks ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 72353 Richard Myers, HAIB 658de2aa677c434cba2c3d2f20b5cb78 https://www.encodeproject.org/files/ENCFF001UOE/@@download/ENCFF001UOE.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001HVR bigBed broadPeak hotspots ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001XTK 5601620 John Stamatoyannopoulos, UW 82b7930cee68fcace389728605aa2fd9 https://www.encodeproject.org/files/ENCFF001HVR/@@download/ENCFF001HVR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF001HVS bigBed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001XTJ 1268479 John Stamatoyannopoulos, UW d02b7d553475f5321a27a6c365c24c82 https://www.encodeproject.org/files/ENCFF001HVS/@@download/ENCFF001HVS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF001HVT bam alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HWA 1023830434 John Stamatoyannopoulos, UW f176d1cffa45fa71953ab30500bd44a1 https://www.encodeproject.org/files/ENCFF001HVT/@@download/ENCFF001HVT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF001HVU bigWig raw signal ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 178902325 John Stamatoyannopoulos, UW 9f7027b5865089b6ce279a1ab709d4df https://www.encodeproject.org/files/ENCFF001HVU/@@download/ENCFF001HVU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF001HWA fastq reads ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1210772717 John Stamatoyannopoulos, UW 648e1a399208e7fe2c78ad1a56b61545 https://www.encodeproject.org/files/ENCFF001HWA/@@download/ENCFF001HWA.fastq.gz Illumina Genome Analyzer /files/ENCFF001HWK/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001XTJ bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 722598 John Stamatoyannopoulos, UW 48a51fbc5d3c55523a17188b1c0125b3 https://www.encodeproject.org/files/ENCFF001XTJ/@@download/ENCFF001XTJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF001XTK bed broadPeak hotspots ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 3083526 John Stamatoyannopoulos, UW 8b8af271382f63035dcf0dc92af4905d https://www.encodeproject.org/files/ENCFF001XTK/@@download/ENCFF001XTK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF002DDO bed narrowPeak optimal idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 711922 ENCODE Consortium Analysis Working Group bc64fef4c49c1c68c531c03381fb685f https://www.encodeproject.org/files/ENCFF002DDO/@@download/ENCFF002DDO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF961PTH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF002DDO 1567443 ENCODE Consortium 0ff0ceca6b7d6bac44c5d9d24bf58044 https://www.encodeproject.org/files/ENCFF961PTH/@@download/ENCFF961PTH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF225KSP bam alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HWA, ENCFF807MUK 858386586 ENCODE Processing Pipeline 8a57101a4657f82470331e5a33c99e14 https://www.encodeproject.org/files/ENCFF225KSP/@@download/ENCFF225KSP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF509JVB bam unfiltered alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HWA, ENCFF807MUK 1372665022 ENCODE Processing Pipeline 2b0d487fa9f549290b6a17db5b484071 https://www.encodeproject.org/files/ENCFF509JVB/@@download/ENCFF509JVB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF181KEB bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225KSP, ENCFF621QAX 4849642 ENCODE Processing Pipeline 46f31a8b0d77d9c6158a8180e8cb041c https://www.encodeproject.org/files/ENCFF181KEB/@@download/ENCFF181KEB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF323PIB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF148VQH 1051109 ENCODE Processing Pipeline 1ea166f902ed10340a78cc703a4f651b https://www.encodeproject.org/files/ENCFF323PIB/@@download/ENCFF323PIB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF148VQH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001TDO, ENCFF181KEB 560605 ENCODE Processing Pipeline a86ff2d29e60757f2f52edeee3d0c068 https://www.encodeproject.org/files/ENCFF148VQH/@@download/ENCFF148VQH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF988MBD bigWig fold change over control ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225KSP, ENCFF621QAX 460463986 ENCODE Processing Pipeline d9c96629f34acfecb54d701f2722d76b https://www.encodeproject.org/files/ENCFF988MBD/@@download/ENCFF988MBD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF126MJY bigWig signal p-value ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225KSP, ENCFF621QAX 630208818 ENCODE Processing Pipeline aa1d544d9eac2808a76a19d4e8500921 https://www.encodeproject.org/files/ENCFF126MJY/@@download/ENCFF126MJY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF673UAW bigBed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF181KEB 11407443 ENCODE Processing Pipeline be8057c88162ab19fc233722eadbbc51 https://www.encodeproject.org/files/ENCFF673UAW/@@download/ENCFF673UAW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF724FGD bam unfiltered alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HWA, ENCFF643CGH 1379393850 ENCODE Processing Pipeline 209b798131f953a94fbf2c47639ee31c https://www.encodeproject.org/files/ENCFF724FGD/@@download/ENCFF724FGD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF758ZNV bam alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HWA, ENCFF643CGH 858049854 ENCODE Processing Pipeline 318fe55563578122dc13a55abe46fe1b https://www.encodeproject.org/files/ENCFF758ZNV/@@download/ENCFF758ZNV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF244LXP bigWig signal p-value ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF662VGC, ENCFF758ZNV 572502675 ENCODE Processing Pipeline 6422b87ea23cc3c486888361b9df6261 https://www.encodeproject.org/files/ENCFF244LXP/@@download/ENCFF244LXP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF339PQD bigWig fold change over control ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF662VGC, ENCFF758ZNV 461101494 ENCODE Processing Pipeline d142bd0f5b7ac2481466a52bed1eba01 https://www.encodeproject.org/files/ENCFF339PQD/@@download/ENCFF339PQD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF510CUI bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF662VGC, ENCFF758ZNV 4815984 ENCODE Processing Pipeline 496dbbf8a8d3dbfa66398b63d149be7c https://www.encodeproject.org/files/ENCFF510CUI/@@download/ENCFF510CUI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF051VWA bigBed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF510CUI 11368118 ENCODE Processing Pipeline 459a25886f9e5082fbe2f7a1ed82f909 https://www.encodeproject.org/files/ENCFF051VWA/@@download/ENCFF051VWA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF822NZG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF218LOB 1044720 ENCODE Processing Pipeline 665ac4523d0c35ce30e59cb45fb9a821 https://www.encodeproject.org/files/ENCFF822NZG/@@download/ENCFF822NZG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF218LOB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF419RSJ, ENCFF510CUI 558787 ENCODE Processing Pipeline a8b458a51ca0b93d765d5144904a6320 https://www.encodeproject.org/files/ENCFF218LOB/@@download/ENCFF218LOB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF000OUQ bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OVB 700987148 Richard Myers, HAIB 5ef728eab84d52432511342cdff63ebd https://www.encodeproject.org/files/ENCFF000OUQ/@@download/ENCFF000OUQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OUR bigBed broadPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCS 586005 Richard Myers, HAIB 985213a54b97dc4e8f8c9c9b4c482645 https://www.encodeproject.org/files/ENCFF000OUR/@@download/ENCFF000OUR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OUS bigBed broadPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCT 555827 Richard Myers, HAIB bde3c51f603a860db6440f0c01db26be https://www.encodeproject.org/files/ENCFF000OUS/@@download/ENCFF000OUS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OUT bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OVC 653168723 Richard Myers, HAIB 635feca05528715587798e647ba03114 https://www.encodeproject.org/files/ENCFF000OUT/@@download/ENCFF000OUT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OUV bigWig raw signal ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 33285760 Richard Myers, HAIB 0ae3dcd0495da2784491fa78ca0fdec9 https://www.encodeproject.org/files/ENCFF000OUV/@@download/ENCFF000OUV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OUW bigWig raw signal ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 22411548 Richard Myers, HAIB 19e8e55ad3d0e72b7d54fc5055bd9b99 https://www.encodeproject.org/files/ENCFF000OUW/@@download/ENCFF000OUW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OVB fastq reads ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 737678431 Richard Myers, HAIB 247297ed50575b0f91b8b7c31ed4b185 https://www.encodeproject.org/files/ENCFF000OVB/@@download/ENCFF000OVB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OVC fastq reads ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 732345719 Richard Myers, HAIB b724177c35de81acf4a7315b86f64b0e https://www.encodeproject.org/files/ENCFF000OVC/@@download/ENCFF000OVC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001UCS bed broadPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 371588 Richard Myers, HAIB 8ae0b4964ac4615972772d49ad6054bb https://www.encodeproject.org/files/ENCFF001UCS/@@download/ENCFF001UCS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UCT bed broadPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 322739 Richard Myers, HAIB 9de6724719e0db507c7985b222e28016 https://www.encodeproject.org/files/ENCFF001UCT/@@download/ENCFF001UCT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CJO bed narrowPeak optimal idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 424230 ENCODE Consortium Analysis Working Group 8c2f6676e4f0bfee35ce23fb53b922e8 https://www.encodeproject.org/files/ENCFF002CJO/@@download/ENCFF002CJO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF025ORE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJO 1116181 ENCODE Consortium 2579302bac4324846abb435149993a01 https://www.encodeproject.org/files/ENCFF025ORE/@@download/ENCFF025ORE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF196FHM bam unfiltered alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVC, ENCFF643CGH 917361785 ENCODE Processing Pipeline 5b321df49f337129f0548343cf2156a1 https://www.encodeproject.org/files/ENCFF196FHM/@@download/ENCFF196FHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF315QGI bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVC, ENCFF643CGH 490066223 ENCODE Processing Pipeline 977c22830c84763c7bc13fe05599664f https://www.encodeproject.org/files/ENCFF315QGI/@@download/ENCFF315QGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF961JDA bam unfiltered alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVB, ENCFF643CGH 926993205 ENCODE Processing Pipeline 144d980a5508afa4a30213140632e865 https://www.encodeproject.org/files/ENCFF961JDA/@@download/ENCFF961JDA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF184PWQ bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVB, ENCFF643CGH 534405570 ENCODE Processing Pipeline 7d2a601a175cd7f2b086a962d7a205d8 https://www.encodeproject.org/files/ENCFF184PWQ/@@download/ENCFF184PWQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF552CKC bam unfiltered alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVB, ENCFF807MUK 924601169 ENCODE Processing Pipeline 7dfe81bb26dea5b6f40a3e1f13069f14 https://www.encodeproject.org/files/ENCFF552CKC/@@download/ENCFF552CKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF456OEK bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVB, ENCFF807MUK 534719094 ENCODE Processing Pipeline b5f6d59f4ca74f403be67cea9c832c4c https://www.encodeproject.org/files/ENCFF456OEK/@@download/ENCFF456OEK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF089LSW bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVC, ENCFF807MUK 490443429 ENCODE Processing Pipeline 19fcd8f17e7404d4a2ee0d72a3058aab https://www.encodeproject.org/files/ENCFF089LSW/@@download/ENCFF089LSW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF209XKV bam unfiltered alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVC, ENCFF807MUK 914691457 ENCODE Processing Pipeline b9071f288e832f5d62a2de2a83fc4a2d https://www.encodeproject.org/files/ENCFF209XKV/@@download/ENCFF209XKV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF635LLL bigWig signal p-value ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF184PWQ, ENCFF948LKH 341305329 ENCODE Processing Pipeline 7a0db8937966ccb19d158e98f2325c6c https://www.encodeproject.org/files/ENCFF635LLL/@@download/ENCFF635LLL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF794QHD bigWig signal p-value ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF315QGI, ENCFF948LKH 416957781 ENCODE Processing Pipeline cc60f83cc14785ea5c244ffef1ba9ceb https://www.encodeproject.org/files/ENCFF794QHD/@@download/ENCFF794QHD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF569TPM bigWig signal p-value ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184PWQ, ENCFF315QGI, ENCFF948LKH 491303596 ENCODE Processing Pipeline 40f9c0b2e5d6537c30f90f15ccfe4e98 https://www.encodeproject.org/files/ENCFF569TPM/@@download/ENCFF569TPM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF894CVE bigWig fold change over control ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF315QGI, ENCFF948LKH 228916877 ENCODE Processing Pipeline f9bad1eeb349fc072a24dce12a7ba44d https://www.encodeproject.org/files/ENCFF894CVE/@@download/ENCFF894CVE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF689QWC bigWig fold change over control ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184PWQ, ENCFF315QGI, ENCFF948LKH 405658769 ENCODE Processing Pipeline 7c21cbea9ab86b3d590885b22447c2cb https://www.encodeproject.org/files/ENCFF689QWC/@@download/ENCFF689QWC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF360PPQ bigWig fold change over control ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF184PWQ, ENCFF948LKH 235229342 ENCODE Processing Pipeline 6fa4bd1650e275079cf230665a1b41ab https://www.encodeproject.org/files/ENCFF360PPQ/@@download/ENCFF360PPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF957ADP bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF184PWQ, ENCFF948LKH 5142962 ENCODE Processing Pipeline c14c27ca56233069a3e3ecbb183b2a02 https://www.encodeproject.org/files/ENCFF957ADP/@@download/ENCFF957ADP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF800CHA bigBed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF966SAM 10692740 ENCODE Processing Pipeline 69deb0e6fa2226271cd406529ed194cb https://www.encodeproject.org/files/ENCFF800CHA/@@download/ENCFF800CHA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF966SAM bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF315QGI, ENCFF948LKH 4792578 ENCODE Processing Pipeline 49aa646a519c8409c5dae7f24f4fbaa7 https://www.encodeproject.org/files/ENCFF966SAM/@@download/ENCFF966SAM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF390BRP bigBed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF957ADP 12944194 ENCODE Processing Pipeline 74fd341919e3d980134476dba7df9f1e https://www.encodeproject.org/files/ENCFF390BRP/@@download/ENCFF390BRP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF893YFW bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184PWQ, ENCFF315QGI, ENCFF948LKH 5649525 ENCODE Processing Pipeline c66da9dc07e99fbf9edcc14de59ff477 https://www.encodeproject.org/files/ENCFF893YFW/@@download/ENCFF893YFW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF741GDG bigBed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF893YFW 13285198 ENCODE Processing Pipeline c39216002a390c63215311cb8091c116 https://www.encodeproject.org/files/ENCFF741GDG/@@download/ENCFF741GDG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF026ZRB bed narrowPeak conservative idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF893YFW, ENCFF957ADP, ENCFF966SAM 476790 ENCODE Processing Pipeline 1d4b173e5856c2bf1c206f9fc6a3af00 https://www.encodeproject.org/files/ENCFF026ZRB/@@download/ENCFF026ZRB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF392WJE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF026ZRB 985131 ENCODE Processing Pipeline 3df856cf494eaa965584a4425f26f1cc https://www.encodeproject.org/files/ENCFF392WJE/@@download/ENCFF392WJE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF870SFJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF893YFW, ENCFF957ADP, ENCFF966SAM 491657 ENCODE Processing Pipeline 37a1e34d55ce2dbc5e698b270c80ac13 https://www.encodeproject.org/files/ENCFF870SFJ/@@download/ENCFF870SFJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF824BVI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF870SFJ 1006428 ENCODE Processing Pipeline 148e49ebaeebede4eac8d1b788980111 https://www.encodeproject.org/files/ENCFF824BVI/@@download/ENCFF824BVI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF182BEB bigWig signal p-value ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF456OEK 343351606 ENCODE Processing Pipeline c86dbdcdfbe00c6a5a8de28508d167b0 https://www.encodeproject.org/files/ENCFF182BEB/@@download/ENCFF182BEB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF084XPA bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089LSW, ENCFF356DXM 4801634 ENCODE Processing Pipeline 4922ff395d00f92548c39d35d3cce488 https://www.encodeproject.org/files/ENCFF084XPA/@@download/ENCFF084XPA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF744EAD bigWig fold change over control ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF456OEK 241665003 ENCODE Processing Pipeline 681d6a9c703a9bf65a3bdaec6d68b06f https://www.encodeproject.org/files/ENCFF744EAD/@@download/ENCFF744EAD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF786UCP bigWig signal p-value ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089LSW, ENCFF356DXM, ENCFF456OEK 432690842 ENCODE Processing Pipeline f9e6a87ec7fdef0ca1ac242f3b3e54af https://www.encodeproject.org/files/ENCFF786UCP/@@download/ENCFF786UCP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF982FRQ bed narrowPeak conservative idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF084XPA, ENCFF361YHU, ENCFF967ZPP 482535 ENCODE Processing Pipeline 8b828fb07fc3ce5dda2d1a5179099d0b https://www.encodeproject.org/files/ENCFF982FRQ/@@download/ENCFF982FRQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF151BKM bigWig fold change over control ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089LSW, ENCFF356DXM, ENCFF456OEK 417430237 ENCODE Processing Pipeline 80d2275b93285875343ccdd6b3ee42fd https://www.encodeproject.org/files/ENCFF151BKM/@@download/ENCFF151BKM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF729QFU bigBed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF967ZPP 12929255 ENCODE Processing Pipeline f9c1e02bd388b5ef0a2924d183ee1acd https://www.encodeproject.org/files/ENCFF729QFU/@@download/ENCFF729QFU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF151BSO bigBed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF084XPA 10708480 ENCODE Processing Pipeline 0fda098e5c79a1754eb8aad2df527864 https://www.encodeproject.org/files/ENCFF151BSO/@@download/ENCFF151BSO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF161XZO bigWig fold change over control ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089LSW, ENCFF356DXM 227587704 ENCODE Processing Pipeline ccf43825b5d5de4ea91db2b47c0897b2 https://www.encodeproject.org/files/ENCFF161XZO/@@download/ENCFF161XZO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF152GDH bigWig signal p-value ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089LSW, ENCFF356DXM 455658531 ENCODE Processing Pipeline 472a7da9e7ca4a35904225e82b5061d2 https://www.encodeproject.org/files/ENCFF152GDH/@@download/ENCFF152GDH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF967ZPP bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF456OEK 5134541 ENCODE Processing Pipeline bb2e02bddc20ea7fbc4c4947d3876f65 https://www.encodeproject.org/files/ENCFF967ZPP/@@download/ENCFF967ZPP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF291NFO bigBed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF361YHU 13292026 ENCODE Processing Pipeline 7885169e829f419a1154c97eea457f3b https://www.encodeproject.org/files/ENCFF291NFO/@@download/ENCFF291NFO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF666HDF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF982FRQ 992074 ENCODE Processing Pipeline 6610b0688024d99987f950927e7845b6 https://www.encodeproject.org/files/ENCFF666HDF/@@download/ENCFF666HDF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF202SNU bed narrowPeak optimal idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF084XPA, ENCFF361YHU, ENCFF967ZPP 484992 ENCODE Processing Pipeline 80c3d936154d88a4a35c94bd1f3b8842 https://www.encodeproject.org/files/ENCFF202SNU/@@download/ENCFF202SNU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF361YHU bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089LSW, ENCFF356DXM, ENCFF456OEK 5646633 ENCODE Processing Pipeline e5c12f13706b7c4018dc6a3c595e2062 https://www.encodeproject.org/files/ENCFF361YHU/@@download/ENCFF361YHU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF086AXZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202SNU 996262 ENCODE Processing Pipeline e38cb43a19aa368cf5de7fa1cc0f0972 https://www.encodeproject.org/files/ENCFF086AXZ/@@download/ENCFF086AXZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001VRG bed narrowPeak peaks ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 962957 Peggy Farnham, USC 4dfb947e5aae74b1a503e23fc26a08c3 https://www.encodeproject.org/files/ENCFF001VRG/@@download/ENCFF001VRG.bed.gz hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF000ZTH bam alignments ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 289089538 Peggy Farnham, USC 642d9e5c763f5681102347c16f554397 https://www.encodeproject.org/files/ENCFF000ZTH/@@download/ENCFF000ZTH.bam hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF002DAC bed narrowPeak optimal idr thresholded peaks ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 460702 ENCODE Consortium Analysis Working Group 5d5d24a11707ba48166091f5d4839bf0 https://www.encodeproject.org/files/ENCFF002DAC/@@download/ENCFF002DAC.bed.gz hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF721KPM bigBed narrowPeak optimal idr thresholded peaks ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE ENCFF002DAC 908888 ENCODE Consortium 560126b6fcd0b026b0303882bd5b7609 https://www.encodeproject.org/files/ENCFF721KPM/@@download/ENCFF721KPM.bigBed hg19 released low read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF000ZTL bigWig signal ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 369028478 Peggy Farnham, USC 79edbfb05d290e71d5f97b7f209f92de https://www.encodeproject.org/files/ENCFF000ZTL/@@download/ENCFF000ZTL.bigWig hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF000ZTR fastq reads ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 1 1 32 single-ended 970122166 Peggy Farnham, USC cb8b58980faa924bd8af98ca77b8da4d https://www.encodeproject.org/files/ENCFF000ZTR/@@download/ENCFF000ZTR.fastq.gz Illumina Genome Analyzer /files/ENCFF000VLG/ released low read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF000ZTQ fastq reads ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 1 2 36 single-ended 896166540 Peggy Farnham, USC e05576bb2f563a45b74c158986e6af83 https://www.encodeproject.org/files/ENCFF000ZTQ/@@download/ENCFF000ZTQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VLG/ released low read length, inconsistent control read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF000ZTG bam alignments ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 412023249 Peggy Farnham, USC 1c061491b46db110cce4c49ae56a1da2 https://www.encodeproject.org/files/ENCFF000ZTG/@@download/ENCFF000ZTG.bam hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF000ZTI bigBed narrowPeak peaks ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE ENCFF001VRG 2060276 Peggy Farnham, USC 671501bc53716d66e16b0e81cf994fd7 https://www.encodeproject.org/files/ENCFF000ZTI/@@download/ENCFF000ZTI.bigBed hg19 released low read length, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF000VXV bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 532941923 Michael Snyder, Stanford 9cf9374fa8c6d93c84b0198f5b634ce0 https://www.encodeproject.org/files/ENCFF000VXV/@@download/ENCFF000VXV.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VXW bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 560370485 Michael Snyder, Stanford 826719966d63c2475c37c7c55535b9f7 https://www.encodeproject.org/files/ENCFF000VXW/@@download/ENCFF000VXW.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VXX bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEO 2004985 Michael Snyder, Stanford 3eb85bf247c97f281eac9f1ab98a5719 https://www.encodeproject.org/files/ENCFF000VXX/@@download/ENCFF000VXX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VXY fastq reads ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 899442048 Michael Snyder, Stanford c0beb4ef75168532471614858922b1e4 https://www.encodeproject.org/files/ENCFF000VXY/@@download/ENCFF000VXY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VYA fastq reads ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 990799110 Michael Snyder, Stanford 3227277b9e54b2779062416e453a5c9f https://www.encodeproject.org/files/ENCFF000VYA/@@download/ENCFF000VYA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VYC bigWig signal ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 397803289 Michael Snyder, Stanford 82ff6b69a53e9167e0118fb5decfd75e https://www.encodeproject.org/files/ENCFF000VYC/@@download/ENCFF000VYC.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VEO bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 803413 Michael Snyder, Stanford 333b325248282e3b6b391937a21bca85 https://www.encodeproject.org/files/ENCFF001VEO/@@download/ENCFF001VEO.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002COW bed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 324987 ENCODE Consortium Analysis Working Group a923b6aa6919e536cb52d9f8be2487b4 https://www.encodeproject.org/files/ENCFF002COW/@@download/ENCFF002COW.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF010EZW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COW 825517 ENCODE Consortium 975280968eadf55a86707b7a0a79b91a https://www.encodeproject.org/files/ENCFF010EZW/@@download/ENCFF010EZW.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF076XQH bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF643CGH 1006071262 ENCODE Processing Pipeline d719d145189d1c88a9eb959e4fffd61e https://www.encodeproject.org/files/ENCFF076XQH/@@download/ENCFF076XQH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF746EMY bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF643CGH 918777742 ENCODE Processing Pipeline 474f6fd647d72dfe9c7c3f5e8f7b3bd6 https://www.encodeproject.org/files/ENCFF746EMY/@@download/ENCFF746EMY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF577KAH bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF643CGH 647409185 ENCODE Processing Pipeline fafa4dcfeb30f270d9736872e0a35120 https://www.encodeproject.org/files/ENCFF577KAH/@@download/ENCFF577KAH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF158TTY bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF643CGH 601003249 ENCODE Processing Pipeline ae0fab79d34b0e4c79a4f7221c23d458 https://www.encodeproject.org/files/ENCFF158TTY/@@download/ENCFF158TTY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF891AOD bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF807MUK 915452305 ENCODE Processing Pipeline 08cb45b32b596d099af6cd41c677ddf4 https://www.encodeproject.org/files/ENCFF891AOD/@@download/ENCFF891AOD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF219JUC bam unfiltered alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF807MUK 1003502016 ENCODE Processing Pipeline b73b6e49909fd47bb9c97c2cfab74aff https://www.encodeproject.org/files/ENCFF219JUC/@@download/ENCFF219JUC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF386FSS bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF807MUK 600228288 ENCODE Processing Pipeline f7bf4764af090adaddd114302fa92536 https://www.encodeproject.org/files/ENCFF386FSS/@@download/ENCFF386FSS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF892REX bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF807MUK 642385480 ENCODE Processing Pipeline 658863e5572f970eabd43e86c20dc6ef https://www.encodeproject.org/files/ENCFF892REX/@@download/ENCFF892REX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF109DBS bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 74152611 ENCODE Processing Pipeline f8f224a7bd34e1cb44ffab40f2a32db5 https://www.encodeproject.org/files/ENCFF109DBS/@@download/ENCFF109DBS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF455RSI bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 231935478 ENCODE Processing Pipeline 619b9e421497b586d4d52a0062dcb074 https://www.encodeproject.org/files/ENCFF455RSI/@@download/ENCFF455RSI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF394OHR bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO, ENCFF892REX 162489005 ENCODE Processing Pipeline 5d7aeb32d75faa788f0785ce59db7988 https://www.encodeproject.org/files/ENCFF394OHR/@@download/ENCFF394OHR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF188TJV bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 264760980 ENCODE Processing Pipeline 3d503b7657d642800197e5456fe2eb86 https://www.encodeproject.org/files/ENCFF188TJV/@@download/ENCFF188TJV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF129MWP bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO, ENCFF892REX 474637700 ENCODE Processing Pipeline d25fafff8c42b8b12afb787ad3e77bd6 https://www.encodeproject.org/files/ENCFF129MWP/@@download/ENCFF129MWP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF173DKW bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 4426090 ENCODE Processing Pipeline 2378c3ce38deeb7f33867522ea39af65 https://www.encodeproject.org/files/ENCFF173DKW/@@download/ENCFF173DKW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF412OKY bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 171884300 ENCODE Processing Pipeline 3dba9fa96b5895aee857d9bc8fa8e52f https://www.encodeproject.org/files/ENCFF412OKY/@@download/ENCFF412OKY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF974XPG bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 4461832 ENCODE Processing Pipeline e97387490d6752ecb997268acf9feaf9 https://www.encodeproject.org/files/ENCFF974XPG/@@download/ENCFF974XPG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF694JRS bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO, ENCFF892REX 5139776 ENCODE Processing Pipeline e62ae5a92f0167124dd7aecc94fdca53 https://www.encodeproject.org/files/ENCFF694JRS/@@download/ENCFF694JRS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF125MIK bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF974XPG 10344465 ENCODE Processing Pipeline 01e3bb005e00dfe0c80388379405df44 https://www.encodeproject.org/files/ENCFF125MIK/@@download/ENCFF125MIK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF110PAC bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF694JRS 13097079 ENCODE Processing Pipeline b1f7c64d14be9ab3d8c2d1e1e312f6c2 https://www.encodeproject.org/files/ENCFF110PAC/@@download/ENCFF110PAC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611CRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF083KVY 674056 ENCODE Processing Pipeline 7e4b94764190fe4871637ff77fdbaa92 https://www.encodeproject.org/files/ENCFF611CRC/@@download/ENCFF611CRC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF773UKX bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF173DKW 10382767 ENCODE Processing Pipeline 7d19f7abe207839cfd6bd64f88c6dedf https://www.encodeproject.org/files/ENCFF773UKX/@@download/ENCFF773UKX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF580WAR bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF407JNK 586564 ENCODE Processing Pipeline 84d417159e08f21762f21118216cbff4 https://www.encodeproject.org/files/ENCFF580WAR/@@download/ENCFF580WAR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF407JNK bed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF173DKW, ENCFF694JRS, ENCFF974XPG 283266 ENCODE Processing Pipeline 6128934d8117e90abe56f5ad2686f43a https://www.encodeproject.org/files/ENCFF407JNK/@@download/ENCFF407JNK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF083KVY bed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF173DKW, ENCFF694JRS, ENCFF974XPG 337281 ENCODE Processing Pipeline 951409976105220a24dc6e8cf17d2090 https://www.encodeproject.org/files/ENCFF083KVY/@@download/ENCFF083KVY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF334VPE bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF158TTY, ENCFF477ZKJ, ENCFF710SMS 263063269 ENCODE Processing Pipeline cec1c00b58e8f4a1e261d4b265470096 https://www.encodeproject.org/files/ENCFF334VPE/@@download/ENCFF334VPE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF109NUR bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF158TTY, ENCFF477ZKJ, ENCFF577KAH, ENCFF710SMS 161829031 ENCODE Processing Pipeline ad1811ab06ab200ceccc37b5dc826931 https://www.encodeproject.org/files/ENCFF109NUR/@@download/ENCFF109NUR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932TVB bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF577KAH 74536011 ENCODE Processing Pipeline 787883ed08b692ed7badfd642d403bb2 https://www.encodeproject.org/files/ENCFF932TVB/@@download/ENCFF932TVB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF652HWZ bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF577KAH 4428513 ENCODE Processing Pipeline db9565bbfb16d235ffc4b99cf4b568ca https://www.encodeproject.org/files/ENCFF652HWZ/@@download/ENCFF652HWZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF360IMJ bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF158TTY, ENCFF477ZKJ, ENCFF710SMS 4465738 ENCODE Processing Pipeline 133c7cddaac1897afa4f2ec60bc50082 https://www.encodeproject.org/files/ENCFF360IMJ/@@download/ENCFF360IMJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF408NKU bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215WSJ 13096107 ENCODE Processing Pipeline c9f74d0095ae22faf78a0715a5dcf4ea https://www.encodeproject.org/files/ENCFF408NKU/@@download/ENCFF408NKU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF280ADG bigWig signal p-value ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF158TTY, ENCFF477ZKJ, ENCFF710SMS 171976425 ENCODE Processing Pipeline 6c9bd2e560fa32bdc9110fe218c8d656 https://www.encodeproject.org/files/ENCFF280ADG/@@download/ENCFF280ADG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF348NRU bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF158TTY, ENCFF477ZKJ, ENCFF577KAH, ENCFF710SMS 470939174 ENCODE Processing Pipeline 4522786af72ac9de1b7ba58e4d24c409 https://www.encodeproject.org/files/ENCFF348NRU/@@download/ENCFF348NRU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF215WSJ bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF158TTY, ENCFF477ZKJ, ENCFF577KAH, ENCFF710SMS 5115892 ENCODE Processing Pipeline f4667220849430dd03f25c9aa2529048 https://www.encodeproject.org/files/ENCFF215WSJ/@@download/ENCFF215WSJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540CNI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF075AKQ 598412 ENCODE Processing Pipeline b922d6012d756d9327a57f439cd885b8 https://www.encodeproject.org/files/ENCFF540CNI/@@download/ENCFF540CNI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF580TPN bigWig fold change over control ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF577KAH 230037427 ENCODE Processing Pipeline 487962fe2687fde751fb69f41922aa74 https://www.encodeproject.org/files/ENCFF580TPN/@@download/ENCFF580TPN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF445XCO bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF652HWZ 10391308 ENCODE Processing Pipeline 06f1a08a06ada2737f01c3131e39b1af https://www.encodeproject.org/files/ENCFF445XCO/@@download/ENCFF445XCO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF075AKQ bed narrowPeak conservative idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215WSJ, ENCFF360IMJ, ENCFF419RSJ, ENCFF652HWZ 291049 ENCODE Processing Pipeline 6c5d27d2daf09350ad81f088fd791fda https://www.encodeproject.org/files/ENCFF075AKQ/@@download/ENCFF075AKQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF734LGZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF270NAL 690833 ENCODE Processing Pipeline f10281ddaf42bfa3af115f020bdc6faa https://www.encodeproject.org/files/ENCFF734LGZ/@@download/ENCFF734LGZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF242NRF bigBed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF360IMJ 10345642 ENCODE Processing Pipeline 9ef86b37aa8b2b0b5cb65114eb9d57dd https://www.encodeproject.org/files/ENCFF242NRF/@@download/ENCFF242NRF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF270NAL bed narrowPeak optimal idr thresholded peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF215WSJ, ENCFF360IMJ, ENCFF419RSJ, ENCFF652HWZ 348024 ENCODE Processing Pipeline 7c7213a90e1e95819536c530e0fa54b8 https://www.encodeproject.org/files/ENCFF270NAL/@@download/ENCFF270NAL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OZM bam alignments ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OZV 1353621360 Richard Myers, HAIB 141088c8f7ec64822744793adf3861ac https://www.encodeproject.org/files/ENCFF000OZM/@@download/ENCFF000OZM.bam hg19 released biological replicates with identical biosample ENCFF000OZN bigBed broadPeak peaks ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDW 352629 Richard Myers, HAIB f365a3524c1edb8c0162ded9c4bd9716 https://www.encodeproject.org/files/ENCFF000OZN/@@download/ENCFF000OZN.bigBed hg19 released biological replicates with identical biosample ENCFF000OZO bigBed broadPeak peaks ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDX 472946 Richard Myers, HAIB 8ba2fb3e795ea84919bb86dd1d7a64f3 https://www.encodeproject.org/files/ENCFF000OZO/@@download/ENCFF000OZO.bigBed hg19 released biological replicates with identical biosample ENCFF000OZP bam alignments ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZZ 1382563273 Richard Myers, HAIB 2acf39a22add16ae105404d66dc215f9 https://www.encodeproject.org/files/ENCFF000OZP/@@download/ENCFF000OZP.bam hg19 released biological replicates with identical biosample ENCFF000OZQ bigWig raw signal ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 1 1 138501338 Richard Myers, HAIB 26626c5f3b956e0431950bcfd237ea96 https://www.encodeproject.org/files/ENCFF000OZQ/@@download/ENCFF000OZQ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000OZR bigWig raw signal ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 2 1 218439417 Richard Myers, HAIB 086262941477740b3d1832de7b620168 https://www.encodeproject.org/files/ENCFF000OZR/@@download/ENCFF000OZR.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000OZV fastq reads ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1454026724 Richard Myers, HAIB 0f8b6f5ee5284cc708536e7200b48532 https://www.encodeproject.org/files/ENCFF000OZV/@@download/ENCFF000OZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000OZZ fastq reads ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1440410607 Richard Myers, HAIB 9f3b510f7a312c0a1f078f19f44e0b98 https://www.encodeproject.org/files/ENCFF000OZZ/@@download/ENCFF000OZZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UDW bed broadPeak peaks ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 1 1 169443 Richard Myers, HAIB c5de02c4d1b4d8207070f89c3463ead4 https://www.encodeproject.org/files/ENCFF001UDW/@@download/ENCFF001UDW.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UDX bed broadPeak peaks ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 2 1 276325 Richard Myers, HAIB 216894b5e74d853dea365eabafc5066f https://www.encodeproject.org/files/ENCFF001UDX/@@download/ENCFF001UDX.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000MYI bam alignments ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000MYX 1609296950 Richard Myers, HAIB a3b3697c38702680560ddc0e6f70af87 https://www.encodeproject.org/files/ENCFF000MYI/@@download/ENCFF000MYI.bam hg19 released biological replicates with identical biosample ENCFF000MYK bigBed broadPeak peaks ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TRX 384137 Richard Myers, HAIB 87e6f1cca311fb3818aa82a00dcbf27f https://www.encodeproject.org/files/ENCFF000MYK/@@download/ENCFF000MYK.bigBed hg19 released biological replicates with identical biosample ENCFF000MYL bigBed broadPeak peaks ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TRY 217296 Richard Myers, HAIB a36a6169e5e794d43af5a7381cc1591f https://www.encodeproject.org/files/ENCFF000MYL/@@download/ENCFF000MYL.bigBed hg19 released biological replicates with identical biosample ENCFF000MYM bam alignments ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000MYY 1363266130 Richard Myers, HAIB 0dbb4f2c014d47de80d362344e139c6c https://www.encodeproject.org/files/ENCFF000MYM/@@download/ENCFF000MYM.bam hg19 released biological replicates with identical biosample ENCFF000MYO bigWig raw signal ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 158113575 Richard Myers, HAIB b4cef075a324cb90f64254b3ad06547a https://www.encodeproject.org/files/ENCFF000MYO/@@download/ENCFF000MYO.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000MYP bigWig raw signal ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 136507280 Richard Myers, HAIB 9815a46322bb9cc7c72c8d5c8ffc0042 https://www.encodeproject.org/files/ENCFF000MYP/@@download/ENCFF000MYP.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000MYX fastq reads ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1618805284 Richard Myers, HAIB 114a4f1d4035e0d57b89c943babfdbc5 https://www.encodeproject.org/files/ENCFF000MYX/@@download/ENCFF000MYX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF000MYY fastq reads ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1390782383 Richard Myers, HAIB f175281db803423740a595be1e477a83 https://www.encodeproject.org/files/ENCFF000MYY/@@download/ENCFF000MYY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF001TRX bed broadPeak peaks ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 219510 Richard Myers, HAIB 0fcefbdf4ab7bfbea8ef2976c0f6ed81 https://www.encodeproject.org/files/ENCFF001TRX/@@download/ENCFF001TRX.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TRY bed broadPeak peaks ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 119346 Richard Myers, HAIB c52749efc481d1cc29a614ef56f57f4b https://www.encodeproject.org/files/ENCFF001TRY/@@download/ENCFF001TRY.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF268REE fastq reads ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1483921770 Richard Myers, HAIB a7b86b36c6ada5de37dc748364d95a26 SRA:SRR5339606 https://www.encodeproject.org/files/ENCFF268REE/@@download/ENCFF268REE.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF482RBF fastq reads ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1235831575 Richard Myers, HAIB f3649783e9f1d1df41ec49dbd3f1e325 SRA:SRR5339605 https://www.encodeproject.org/files/ENCFF482RBF/@@download/ENCFF482RBF.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF177GEH bam unfiltered alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 76 ENCFF268REE, ENCFF643CGH 1454485756 ENCODE Processing Pipeline 0e51bb7817cbed27a76710e2bc7f4f3b https://www.encodeproject.org/files/ENCFF177GEH/@@download/ENCFF177GEH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF939QRF bam unfiltered alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 76 ENCFF482RBF, ENCFF807MUK 1251844970 ENCODE Processing Pipeline 4dbb1aa2d5da7871d213fae85f17e46a https://www.encodeproject.org/files/ENCFF939QRF/@@download/ENCFF939QRF.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF473VCY bam unfiltered alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 76 ENCFF268REE, ENCFF807MUK 1452812203 ENCODE Processing Pipeline e3b5babe68940cd306b85fb222e2fb6c https://www.encodeproject.org/files/ENCFF473VCY/@@download/ENCFF473VCY.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF647QVM bam unfiltered alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 76 ENCFF482RBF, ENCFF643CGH 1253543226 ENCODE Processing Pipeline fd257d78a9ea110e0454a744eb145a5a https://www.encodeproject.org/files/ENCFF647QVM/@@download/ENCFF647QVM.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF340WWW bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 76 ENCFF482RBF, ENCFF643CGH 973760622 ENCODE Processing Pipeline 1f453303a38ce206800610c9415c39f1 https://www.encodeproject.org/files/ENCFF340WWW/@@download/ENCFF340WWW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF244QRT bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 76 ENCFF482RBF, ENCFF807MUK 973556139 ENCODE Processing Pipeline af4d126ddad40bc2b0b26e0c8f8c5cdd https://www.encodeproject.org/files/ENCFF244QRT/@@download/ENCFF244QRT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF706WAT bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 76 ENCFF268REE, ENCFF807MUK 1051364467 ENCODE Processing Pipeline 9023fed389e469cd522209e4cad839cd https://www.encodeproject.org/files/ENCFF706WAT/@@download/ENCFF706WAT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515TAU bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 76 ENCFF268REE, ENCFF643CGH 1051584745 ENCODE Processing Pipeline c234494f1ea81faffab704362a47a150 https://www.encodeproject.org/files/ENCFF515TAU/@@download/ENCFF515TAU.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF612YHM bigWig signal p-value ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF340WWW 586595640 ENCODE Processing Pipeline c024a9de62c22fd8793c65749bd0c36c https://www.encodeproject.org/files/ENCFF612YHM/@@download/ENCFF612YHM.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617ELJ bigWig signal p-value ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF515TAU 520931481 ENCODE Processing Pipeline 1537fc90bd616f2a00d0606c052b93be https://www.encodeproject.org/files/ENCFF617ELJ/@@download/ENCFF617ELJ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF960LYC bigWig fold change over control ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF515TAU 403919981 ENCODE Processing Pipeline 16853b96e462b4b3f7b2ff6901d7edfb https://www.encodeproject.org/files/ENCFF960LYC/@@download/ENCFF960LYC.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392JHQ bigWig signal p-value ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340WWW, ENCFF515TAU 626674339 ENCODE Processing Pipeline 3cf8aaab8f6a0eb18a661d36af54b936 https://www.encodeproject.org/files/ENCFF392JHQ/@@download/ENCFF392JHQ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF534XZR bigWig fold change over control ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF340WWW 393994613 ENCODE Processing Pipeline e079acd8206454627d612e330d289c4c https://www.encodeproject.org/files/ENCFF534XZR/@@download/ENCFF534XZR.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF549MBZ bigWig fold change over control ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340WWW, ENCFF515TAU 666558876 ENCODE Processing Pipeline d5522b7ea692ad08884e082dd2400775 https://www.encodeproject.org/files/ENCFF549MBZ/@@download/ENCFF549MBZ.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670ZZL bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF515TAU 6163801 ENCODE Processing Pipeline 524794d680eb805e3f08cba8fdc326bf https://www.encodeproject.org/files/ENCFF670ZZL/@@download/ENCFF670ZZL.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454INC bigBed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF670ZZL 12645222 ENCODE Processing Pipeline 7748002b42901e9b7fca581a77db725a https://www.encodeproject.org/files/ENCFF454INC/@@download/ENCFF454INC.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF279RBI bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF340WWW 6267493 ENCODE Processing Pipeline 64b4acf935d572bbf81a0482d78d75bc https://www.encodeproject.org/files/ENCFF279RBI/@@download/ENCFF279RBI.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF517IJC bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF340WWW, ENCFF515TAU 6713748 ENCODE Processing Pipeline a4d07aec3065571d0a73b7b6efcf7077 https://www.encodeproject.org/files/ENCFF517IJC/@@download/ENCFF517IJC.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF372IZW bigBed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF279RBI 12582850 ENCODE Processing Pipeline 5baa9b46e5bfe5157001fb175cf20451 https://www.encodeproject.org/files/ENCFF372IZW/@@download/ENCFF372IZW.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF189NTN bed narrowPeak conservative idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF279RBI, ENCFF419RSJ, ENCFF517IJC, ENCFF670ZZL 1124229 ENCODE Processing Pipeline 50eb3a87ba2c4e8f9f5b156abb3e97fa https://www.encodeproject.org/files/ENCFF189NTN/@@download/ENCFF189NTN.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF404MAS bigBed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF517IJC 12697841 ENCODE Processing Pipeline e83ec826f666bf352324726927ad62ce https://www.encodeproject.org/files/ENCFF404MAS/@@download/ENCFF404MAS.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF557UNV bigBed narrowPeak optimal idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF430RKX 2349074 ENCODE Processing Pipeline 0a4f60594bc63cb8ac446d3bcd760653 https://www.encodeproject.org/files/ENCFF557UNV/@@download/ENCFF557UNV.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF430RKX bed narrowPeak optimal idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF279RBI, ENCFF419RSJ, ENCFF517IJC, ENCFF670ZZL 1166851 ENCODE Processing Pipeline 2d58b5893f635c8976fe5fe574bb7fb6 https://www.encodeproject.org/files/ENCFF430RKX/@@download/ENCFF430RKX.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF562QEA bigBed narrowPeak conservative idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF189NTN 2280426 ENCODE Processing Pipeline 18a7dbe3038190dce0a5350afad19b15 https://www.encodeproject.org/files/ENCFF562QEA/@@download/ENCFF562QEA.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF516YGF bigWig signal p-value ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF706WAT 1157071739 ENCODE Processing Pipeline 48bf36b9c03018ed99d16246791120ce https://www.encodeproject.org/files/ENCFF516YGF/@@download/ENCFF516YGF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF261BVB bigWig signal p-value ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF244QRT 1254553560 ENCODE Processing Pipeline 6a9c57741ada7bc9bb25976694ba5424 https://www.encodeproject.org/files/ENCFF261BVB/@@download/ENCFF261BVB.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF309ZRM bigWig signal p-value ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF244QRT, ENCFF706WAT 1459264475 ENCODE Processing Pipeline 77097e0799a31cc638523402026e9dfa https://www.encodeproject.org/files/ENCFF309ZRM/@@download/ENCFF309ZRM.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF259YPS bigWig fold change over control ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF706WAT 743457399 ENCODE Processing Pipeline eb281b6f14f9160dc4f5476b2a8df1f0 https://www.encodeproject.org/files/ENCFF259YPS/@@download/ENCFF259YPS.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF790ETM bigWig fold change over control ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF244QRT 727197397 ENCODE Processing Pipeline a93dcdbbd8f8cad86f22045b45d5654c https://www.encodeproject.org/files/ENCFF790ETM/@@download/ENCFF790ETM.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF846DFV bigWig fold change over control ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF244QRT, ENCFF706WAT 1152983825 ENCODE Processing Pipeline 7f52d4969f04478cd274fc878655c959 https://www.encodeproject.org/files/ENCFF846DFV/@@download/ENCFF846DFV.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF190UUO bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF706WAT 6526727 ENCODE Processing Pipeline 963237eb997213e3cad8566da10d8d4a https://www.encodeproject.org/files/ENCFF190UUO/@@download/ENCFF190UUO.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF848YTC bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF244QRT 6564830 ENCODE Processing Pipeline 9a3e968041c1b1c1d3e083e7e0033939 https://www.encodeproject.org/files/ENCFF848YTC/@@download/ENCFF848YTC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF440NXD bigBed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF190UUO 12636748 ENCODE Processing Pipeline e1910d464ba346ad2d976f68cc2e7820 https://www.encodeproject.org/files/ENCFF440NXD/@@download/ENCFF440NXD.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF121PMC bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF244QRT, ENCFF706WAT 6877229 ENCODE Processing Pipeline 4ed416261a2fdf4da08b85e75e47eb8d https://www.encodeproject.org/files/ENCFF121PMC/@@download/ENCFF121PMC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF761DSU bigBed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF848YTC 12452190 ENCODE Processing Pipeline b237a6a9da739bdd5494095bf8e2a499 https://www.encodeproject.org/files/ENCFF761DSU/@@download/ENCFF761DSU.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF506KOD bigBed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF121PMC 12607957 ENCODE Processing Pipeline 0bf58f3fc3894364b3e6ed05cbb3196c https://www.encodeproject.org/files/ENCFF506KOD/@@download/ENCFF506KOD.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF295TJG bed narrowPeak optimal idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF121PMC, ENCFF190UUO, ENCFF848YTC 1213040 ENCODE Processing Pipeline 7dbde427a24bcdfb4c7254eecd81f278 https://www.encodeproject.org/files/ENCFF295TJG/@@download/ENCFF295TJG.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF729ARL bed narrowPeak conservative idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF121PMC, ENCFF190UUO, ENCFF848YTC 1163314 ENCODE Processing Pipeline 64c6a212df45c4b8324553d8af9b7977 https://www.encodeproject.org/files/ENCFF729ARL/@@download/ENCFF729ARL.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF314KOU bigBed narrowPeak conservative idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF729ARL 2312085 ENCODE Processing Pipeline 5a7a2aeff618e2ad0db234af026fd282 https://www.encodeproject.org/files/ENCFF314KOU/@@download/ENCFF314KOU.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF094DPP bigBed narrowPeak optimal idr thresholded peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF295TJG 2393353 ENCODE Processing Pipeline 4f66c51ae175b020328e4788b18ecf1c https://www.encodeproject.org/files/ENCFF094DPP/@@download/ENCFF094DPP.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000NZP bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OAD 824327593 Richard Myers, HAIB 48a26cfaef9f38fd5058ddf2235c673d https://www.encodeproject.org/files/ENCFF000NZP/@@download/ENCFF000NZP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000NZR bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OAF 890020471 Richard Myers, HAIB 703340fad3b63649b18aaa7ee634a12b https://www.encodeproject.org/files/ENCFF000NZR/@@download/ENCFF000NZR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000NZT bigBed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYC 443294 Richard Myers, HAIB 6a487d38accf6f54f1a9162adbbc198d https://www.encodeproject.org/files/ENCFF000NZT/@@download/ENCFF000NZT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000NZU bigBed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYD 744558 Richard Myers, HAIB 8b718e0a80eaaa094f4da67dbb93cad0 https://www.encodeproject.org/files/ENCFF000NZU/@@download/ENCFF000NZU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000NZV bigWig raw signal ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 18401340 Richard Myers, HAIB 18a4bb4f46338181723315902643638a https://www.encodeproject.org/files/ENCFF000NZV/@@download/ENCFF000NZV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000NZW bigWig raw signal ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 23253234 Richard Myers, HAIB 019aebdbc34b09317dc76c8b823be0c8 https://www.encodeproject.org/files/ENCFF000NZW/@@download/ENCFF000NZW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000OAD fastq reads ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 977701731 Richard Myers, HAIB 3b033aa9f3910e33ba5b5e9cf985c7ae https://www.encodeproject.org/files/ENCFF000OAD/@@download/ENCFF000OAD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF000OAF fastq reads ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1045848220 Richard Myers, HAIB bfeb84734180538588142463cf6536c4 https://www.encodeproject.org/files/ENCFF000OAF/@@download/ENCFF000OAF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF001TYC bed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 1 230920 Richard Myers, HAIB 40736db437a314562c2cb7278c353445 https://www.encodeproject.org/files/ENCFF001TYC/@@download/ENCFF001TYC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF001TYD bed broadPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 1 407474 Richard Myers, HAIB 7af331059b42fcb8a71e94cdde2fdf1b https://www.encodeproject.org/files/ENCFF001TYD/@@download/ENCFF001TYD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF002CHL bed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 256644 ENCODE Consortium Analysis Working Group 74d56b36de93116ca951da4d1b0fc189 https://www.encodeproject.org/files/ENCFF002CHL/@@download/ENCFF002CHL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF182VLG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHL 705763 ENCODE Consortium e8698ddd04c50196d3212af89c67a737 https://www.encodeproject.org/files/ENCFF182VLG/@@download/ENCFF182VLG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF304FLU bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF807MUK 1215889607 ENCODE Processing Pipeline 3a7da11dfa627d9d5a986b0de2e9ab9d https://www.encodeproject.org/files/ENCFF304FLU/@@download/ENCFF304FLU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF975ADV bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF807MUK 560822826 ENCODE Processing Pipeline 4cd1cb59446830b972144f30c1b6a646 https://www.encodeproject.org/files/ENCFF975ADV/@@download/ENCFF975ADV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF995SFW bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF807MUK 1324854751 ENCODE Processing Pipeline 01d2a648ef5b64517b254988479db54e https://www.encodeproject.org/files/ENCFF995SFW/@@download/ENCFF995SFW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF183DZU bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF807MUK 666963521 ENCODE Processing Pipeline 2025825749236bed4a08edd407832e2e https://www.encodeproject.org/files/ENCFF183DZU/@@download/ENCFF183DZU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF558OGS bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF643CGH 1219134745 ENCODE Processing Pipeline 8a00f25dc82199917c8563c6a8b79b99 https://www.encodeproject.org/files/ENCFF558OGS/@@download/ENCFF558OGS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF389MHG bam unfiltered alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF643CGH 1328410851 ENCODE Processing Pipeline f9a543998aa01a5b793702afa38c57c7 https://www.encodeproject.org/files/ENCFF389MHG/@@download/ENCFF389MHG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF791EPM bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF643CGH 565801917 ENCODE Processing Pipeline f51a56a7b622c6d25b4a277b6820da99 https://www.encodeproject.org/files/ENCFF791EPM/@@download/ENCFF791EPM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF845MYC bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF643CGH 668203511 ENCODE Processing Pipeline 141168d9fac65acd3bce40b23283d1de https://www.encodeproject.org/files/ENCFF845MYC/@@download/ENCFF845MYC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF152BKY bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF562HPN, ENCFF845MYC 349198728 ENCODE Processing Pipeline cb9e648393a8e4cc12e2d14504c6d133 https://www.encodeproject.org/files/ENCFF152BKY/@@download/ENCFF152BKY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF889RYR bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM 4204745 ENCODE Processing Pipeline 11d261f703f14bbe7c34db9443958ed6 https://www.encodeproject.org/files/ENCFF889RYR/@@download/ENCFF889RYR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF671AVF bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM 534391643 ENCODE Processing Pipeline 3b54348fda6dea7ca2e4b668ac187fc6 https://www.encodeproject.org/files/ENCFF671AVF/@@download/ENCFF671AVF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF531XMY bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM, ENCFF845MYC 802666691 ENCODE Processing Pipeline 4e1c59501bac627df1fdc426c06d29f2 https://www.encodeproject.org/files/ENCFF531XMY/@@download/ENCFF531XMY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF845ROK bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM 294731890 ENCODE Processing Pipeline 60003a86c6fc812ccc28e2e2dcd5e131 https://www.encodeproject.org/files/ENCFF845ROK/@@download/ENCFF845ROK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF349FQI bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF562HPN, ENCFF845MYC 4769330 ENCODE Processing Pipeline 3eed8d776f318cf7287353397732b077 https://www.encodeproject.org/files/ENCFF349FQI/@@download/ENCFF349FQI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF535BIH bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM, ENCFF845MYC 549618056 ENCODE Processing Pipeline c2a024884b27c0308b2687fc0093941c https://www.encodeproject.org/files/ENCFF535BIH/@@download/ENCFF535BIH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF923PSA bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF562HPN, ENCFF845MYC 539049556 ENCODE Processing Pipeline 64f71af360e740da35f08904dca2d526 https://www.encodeproject.org/files/ENCFF923PSA/@@download/ENCFF923PSA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF067LQX bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF562HPN, ENCFF791EPM, ENCFF845MYC 5159518 ENCODE Processing Pipeline 3b4f3dfff54782a1eaa15e8fbae1670d https://www.encodeproject.org/files/ENCFF067LQX/@@download/ENCFF067LQX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF784OKU bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF889RYR 10549707 ENCODE Processing Pipeline d2247550dcfd9e804b8f91590325b124 https://www.encodeproject.org/files/ENCFF784OKU/@@download/ENCFF784OKU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF926LHG bed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LQX, ENCFF349FQI, ENCFF419RSJ, ENCFF889RYR 212397 ENCODE Processing Pipeline 75ec5e416d30c6b0cc55ca9abd1dd655 https://www.encodeproject.org/files/ENCFF926LHG/@@download/ENCFF926LHG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF887BST bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF926LHG 378657 ENCODE Processing Pipeline e36db0b0be6894e8c96dd57e8514c089 https://www.encodeproject.org/files/ENCFF887BST/@@download/ENCFF887BST.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF636MTC bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF349FQI 10898258 ENCODE Processing Pipeline c1d26f1b6c8543717cafcff0c2bc16f8 https://www.encodeproject.org/files/ENCFF636MTC/@@download/ENCFF636MTC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF905NDT bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LQX 11245939 ENCODE Processing Pipeline 8ef0f5d864c3ed63af22f199bcf004bf https://www.encodeproject.org/files/ENCFF905NDT/@@download/ENCFF905NDT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF003INQ bed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LQX, ENCFF349FQI, ENCFF419RSJ, ENCFF889RYR 56357 ENCODE Processing Pipeline a7c9856d3d0425f174eef23ffd32929b https://www.encodeproject.org/files/ENCFF003INQ/@@download/ENCFF003INQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF440TQU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF003INQ 139631 ENCODE Processing Pipeline 1aad31bae4c2a2df681a2493a205c0d7 https://www.encodeproject.org/files/ENCFF440TQU/@@download/ENCFF440TQU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF505MRA bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 297089789 ENCODE Processing Pipeline 20a5119d186f91bdef60ce112476ff09 https://www.encodeproject.org/files/ENCFF505MRA/@@download/ENCFF505MRA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF312KOJ bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 4771390 ENCODE Processing Pipeline e67d39616e6c69a48e8ff1925f3aca82 https://www.encodeproject.org/files/ENCFF312KOJ/@@download/ENCFF312KOJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF413IFA bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF961XVK 11220569 ENCODE Processing Pipeline 6f6024948fbecc3ec314b2391d3e4c1a https://www.encodeproject.org/files/ENCFF413IFA/@@download/ENCFF413IFA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF022SDG bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR, ENCFF975ADV 566356970 ENCODE Processing Pipeline d612bff0fd912ca6302df098be75714a https://www.encodeproject.org/files/ENCFF022SDG/@@download/ENCFF022SDG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF937OGC bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 584004184 ENCODE Processing Pipeline c469a0bfe79898e26e5f73e1a9629d7a https://www.encodeproject.org/files/ENCFF937OGC/@@download/ENCFF937OGC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF999YFK bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 4223573 ENCODE Processing Pipeline 31c6d64503c75d48ab0ec0985faa8ae3 https://www.encodeproject.org/files/ENCFF999YFK/@@download/ENCFF999YFK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF188MLT bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 607508731 ENCODE Processing Pipeline bdff11c456daca4084bc033a0c5a3c56 https://www.encodeproject.org/files/ENCFF188MLT/@@download/ENCFF188MLT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF098TMS bigWig signal p-value ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR, ENCFF975ADV 790035262 ENCODE Processing Pipeline f0ab20b48eb676280d87f04a80b81fab https://www.encodeproject.org/files/ENCFF098TMS/@@download/ENCFF098TMS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF961XVK bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR, ENCFF975ADV 5140666 ENCODE Processing Pipeline 09331e575474ad7040ef3c2d15622837 https://www.encodeproject.org/files/ENCFF961XVK/@@download/ENCFF961XVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF934AHA bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF312KOJ 10895564 ENCODE Processing Pipeline f8be8d292789a3cce4ba7c2e13449aa6 https://www.encodeproject.org/files/ENCFF934AHA/@@download/ENCFF934AHA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF717IXP bed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF312KOJ, ENCFF961XVK, ENCFF999YFK 202822 ENCODE Processing Pipeline f39e6439756dca581c82f686dd30b485 https://www.encodeproject.org/files/ENCFF717IXP/@@download/ENCFF717IXP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF438DUW bigWig fold change over control ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 349586906 ENCODE Processing Pipeline 3c67783677c2f4b3b2d242c49f4fc852 https://www.encodeproject.org/files/ENCFF438DUW/@@download/ENCFF438DUW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF511YXY bed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF312KOJ, ENCFF961XVK, ENCFF999YFK 55845 ENCODE Processing Pipeline 595f0e4565a0cb650baa79f4fdfe2bf1 https://www.encodeproject.org/files/ENCFF511YXY/@@download/ENCFF511YXY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF154ZCV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF511YXY 138420 ENCODE Processing Pipeline 6f2c5d4d2ee0eb3d28207d1e55fc76b7 https://www.encodeproject.org/files/ENCFF154ZCV/@@download/ENCFF154ZCV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF858NUW bigBed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF999YFK 10572806 ENCODE Processing Pipeline 737a0919065f9573e44a2950edc4fc94 https://www.encodeproject.org/files/ENCFF858NUW/@@download/ENCFF858NUW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF015GRT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF717IXP 365908 ENCODE Processing Pipeline 9bb774fad63186bbd1a37d83730b90cd https://www.encodeproject.org/files/ENCFF015GRT/@@download/ENCFF015GRT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF001GXX bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYP 1095958701 John Stamatoyannopoulos, UW c727e671d1240bcfd55c66a609df3877 https://www.encodeproject.org/files/ENCFF001GXX/@@download/ENCFF001GXX.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GXY bigBed broadPeak hotspots ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMF 3605505 John Stamatoyannopoulos, UW ceb9ca625427f282a09a397db506b6f0 https://www.encodeproject.org/files/ENCFF001GXY/@@download/ENCFF001GXY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYA bigBed broadPeak hotspots ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMH 5414929 John Stamatoyannopoulos, UW 1604508c46c5dc035e49b78c68cea617 https://www.encodeproject.org/files/ENCFF001GYA/@@download/ENCFF001GYA.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYB bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMG 1344113 John Stamatoyannopoulos, UW cd1b455c9602a85a23c14d78658fad27 https://www.encodeproject.org/files/ENCFF001GYB/@@download/ENCFF001GYB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYC bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMI 1442042 John Stamatoyannopoulos, UW e0edc6234877997ca6023635bd466067 https://www.encodeproject.org/files/ENCFF001GYC/@@download/ENCFF001GYC.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYD bigWig raw signal ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXX 203005516 John Stamatoyannopoulos, UW e26fe6f521585c8ecb4bf542fc2cf850 https://www.encodeproject.org/files/ENCFF001GYD/@@download/ENCFF001GYD.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYE bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYQ 1313579004 John Stamatoyannopoulos, UW 40058cc7fee84233902a710cd2bc8749 https://www.encodeproject.org/files/ENCFF001GYE/@@download/ENCFF001GYE.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYF bigWig raw signal ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYE 206449034 John Stamatoyannopoulos, UW 0658734ee0517f110964e4ab51b996a1 https://www.encodeproject.org/files/ENCFF001GYF/@@download/ENCFF001GYF.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYP fastq reads ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1193944670 John Stamatoyannopoulos, UW 2f8f848267352bb4eb567611e15c2bb9 https://www.encodeproject.org/files/ENCFF001GYP/@@download/ENCFF001GYP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GYO/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001GYQ fastq reads ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1422349132 John Stamatoyannopoulos, UW 15cfd086f359dfa8b75f3c618fada330 https://www.encodeproject.org/files/ENCFF001GYQ/@@download/ENCFF001GYQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GYO/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001XMF bed broadPeak hotspots ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXX 2537098 John Stamatoyannopoulos, UW 1e11db2d9cdb9b31f897901d50d3e7cb https://www.encodeproject.org/files/ENCFF001XMF/@@download/ENCFF001XMF.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001XMG bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXX 776832 John Stamatoyannopoulos, UW ef1458cf48d383d368ac8115bfaa0a8b https://www.encodeproject.org/files/ENCFF001XMG/@@download/ENCFF001XMG.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001XMH bed broadPeak hotspots ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYE 2943112 John Stamatoyannopoulos, UW 2a1ef974d76282617f912067b4e0d65e https://www.encodeproject.org/files/ENCFF001XMH/@@download/ENCFF001XMH.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF001XMI bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYE 845639 John Stamatoyannopoulos, UW 9d613fc37537831c5d4a421627d5acea https://www.encodeproject.org/files/ENCFF001XMI/@@download/ENCFF001XMI.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF002DBZ bed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GXX, ENCFF001GYE 993535 ENCODE Consortium Analysis Working Group c3f6929e66ef953454d578c9d2204936 https://www.encodeproject.org/files/ENCFF002DBZ/@@download/ENCFF002DBZ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF878XRS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DBZ 2087331 ENCODE Consortium 67f6c263de730337c32d2833527d91b3 https://www.encodeproject.org/files/ENCFF878XRS/@@download/ENCFF878XRS.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF045ZZK bam unfiltered alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYP, ENCFF643CGH 1373230426 ENCODE Processing Pipeline c7aefe2d935c049729bc936553d8bd0c https://www.encodeproject.org/files/ENCFF045ZZK/@@download/ENCFF045ZZK.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF672YBO bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYP, ENCFF643CGH 921763972 ENCODE Processing Pipeline 5c0cfb6d28d247f2519a35abeaff2621 https://www.encodeproject.org/files/ENCFF672YBO/@@download/ENCFF672YBO.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF189RKM bam unfiltered alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYQ, ENCFF643CGH 1610286142 ENCODE Processing Pipeline 86925625822cbc263c32dfaafa50e3b1 https://www.encodeproject.org/files/ENCFF189RKM/@@download/ENCFF189RKM.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF024CIJ bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYQ, ENCFF643CGH 1092265491 ENCODE Processing Pipeline 4655ca8d5a7dce86648dc854ad582738 https://www.encodeproject.org/files/ENCFF024CIJ/@@download/ENCFF024CIJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF728CCJ bam unfiltered alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYP, ENCFF807MUK 1366842301 ENCODE Processing Pipeline 9f0ebaf0bdb8c3b746ee7d2387e56fa5 https://www.encodeproject.org/files/ENCFF728CCJ/@@download/ENCFF728CCJ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF312YQR bam unfiltered alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYQ, ENCFF807MUK 1603014910 ENCODE Processing Pipeline 1288dbe66f9cd452687ed00712d7cc06 https://www.encodeproject.org/files/ENCFF312YQR/@@download/ENCFF312YQR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF450ZYV bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYP, ENCFF807MUK 922052382 ENCODE Processing Pipeline 389424699fd722dbda72af494c1fd5cc https://www.encodeproject.org/files/ENCFF450ZYV/@@download/ENCFF450ZYV.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF068EQL bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYQ, ENCFF807MUK 1092507543 ENCODE Processing Pipeline 0c0bd724b4de5f7c506f99baab676d3f https://www.encodeproject.org/files/ENCFF068EQL/@@download/ENCFF068EQL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF444DFH bigWig signal p-value ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF085CHA, ENCFF672YBO 414716656 ENCODE Processing Pipeline b1043305b06f1f3b90edcfbbe02507eb https://www.encodeproject.org/files/ENCFF444DFH/@@download/ENCFF444DFH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF026OUR bigWig signal p-value ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF024CIJ, ENCFF085CHA 437290343 ENCODE Processing Pipeline 4abcb6988d5fdaa74e7b3d40d690d21e https://www.encodeproject.org/files/ENCFF026OUR/@@download/ENCFF026OUR.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF539WLP bigWig signal p-value ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF024CIJ, ENCFF085CHA, ENCFF672YBO 410295915 ENCODE Processing Pipeline 457328b9aa028c1d397afeca615c6d66 https://www.encodeproject.org/files/ENCFF539WLP/@@download/ENCFF539WLP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF577ZPJ bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF085CHA, ENCFF672YBO 4287774 ENCODE Processing Pipeline 1a30f5659161e614549de1addc86ca3b https://www.encodeproject.org/files/ENCFF577ZPJ/@@download/ENCFF577ZPJ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF905ZWT bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF024CIJ, ENCFF085CHA 4378711 ENCODE Processing Pipeline 26bbb841a288b3340f806a0da1aa2162 https://www.encodeproject.org/files/ENCFF905ZWT/@@download/ENCFF905ZWT.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF306DUK bigWig fold change over control ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF024CIJ, ENCFF085CHA 407341205 ENCODE Processing Pipeline c23a554e0ce674a9c01ab9d853923ad1 https://www.encodeproject.org/files/ENCFF306DUK/@@download/ENCFF306DUK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF694SQA bigWig fold change over control ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF024CIJ, ENCFF085CHA, ENCFF672YBO 669378145 ENCODE Processing Pipeline 9dff6ce47af652ed91f8206e6beefc9f https://www.encodeproject.org/files/ENCFF694SQA/@@download/ENCFF694SQA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF234EGC bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF024CIJ, ENCFF085CHA, ENCFF672YBO 4888757 ENCODE Processing Pipeline 80e10aec6b7e63d450b35d943a4e2ccb https://www.encodeproject.org/files/ENCFF234EGC/@@download/ENCFF234EGC.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF427VIW bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF577ZPJ 10856082 ENCODE Processing Pipeline 235881fa634683f968f432a312349e4a https://www.encodeproject.org/files/ENCFF427VIW/@@download/ENCFF427VIW.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF333MUS bigWig fold change over control ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF085CHA, ENCFF672YBO 373224858 ENCODE Processing Pipeline e66f6911dbd7ff79c1a334ab28808d4e https://www.encodeproject.org/files/ENCFF333MUS/@@download/ENCFF333MUS.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF761TAO bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF905ZWT 11075067 ENCODE Processing Pipeline b54ea25ed6b0412fe5b9bac58a57fadf https://www.encodeproject.org/files/ENCFF761TAO/@@download/ENCFF761TAO.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF136BPG bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF234EGC 11545507 ENCODE Processing Pipeline 9b343d86396722947e4edf822caca22d https://www.encodeproject.org/files/ENCFF136BPG/@@download/ENCFF136BPG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF100IYW bed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF234EGC, ENCFF419RSJ, ENCFF577ZPJ, ENCFF905ZWT 814713 ENCODE Processing Pipeline 339750deb95f31a3d5c2bb4c06980d2d https://www.encodeproject.org/files/ENCFF100IYW/@@download/ENCFF100IYW.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF474WFE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF100IYW 1448454 ENCODE Processing Pipeline 4f4cd6dbd85c1c43535bf86310f4c046 https://www.encodeproject.org/files/ENCFF474WFE/@@download/ENCFF474WFE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF298KSS bigWig fold change over control ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF060TFC, ENCFF450ZYV 374892857 ENCODE Processing Pipeline 5c96b84186777ad98d9c244ea907168b https://www.encodeproject.org/files/ENCFF298KSS/@@download/ENCFF298KSS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF831JCD bigWig fold change over control ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF060TFC, ENCFF068EQL 408488815 ENCODE Processing Pipeline 951598179be5e296c9c77a34496c3b73 https://www.encodeproject.org/files/ENCFF831JCD/@@download/ENCFF831JCD.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF908HXT bigWig fold change over control ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF060TFC, ENCFF068EQL, ENCFF450ZYV 681786514 ENCODE Processing Pipeline 96b1930644ed0496559eb80deb584a8f https://www.encodeproject.org/files/ENCFF908HXT/@@download/ENCFF908HXT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF229WQW bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF060TFC, ENCFF068EQL, ENCFF450ZYV 4866150 ENCODE Processing Pipeline c3d8b7c287789e9d8881068bff304f9e https://www.encodeproject.org/files/ENCFF229WQW/@@download/ENCFF229WQW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF133VCN bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF025STW 10940930 ENCODE Processing Pipeline ba0a364da291c99a743fb6afa5081242 https://www.encodeproject.org/files/ENCFF133VCN/@@download/ENCFF133VCN.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF473KJZ bigWig signal p-value ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF060TFC, ENCFF450ZYV 415140703 ENCODE Processing Pipeline f9c2bd40c954470512262529d8b5f550 https://www.encodeproject.org/files/ENCFF473KJZ/@@download/ENCFF473KJZ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF784PHR bigWig signal p-value ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF060TFC, ENCFF068EQL 437489445 ENCODE Processing Pipeline 2515647ad4b445a3b647e3cf35f12c89 https://www.encodeproject.org/files/ENCFF784PHR/@@download/ENCFF784PHR.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF587PBT bigWig signal p-value ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF060TFC, ENCFF068EQL, ENCFF450ZYV 422752712 ENCODE Processing Pipeline bb9327d1fa47edac5c98d87f50e20bbd https://www.encodeproject.org/files/ENCFF587PBT/@@download/ENCFF587PBT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF025STW bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF060TFC, ENCFF450ZYV 4354501 ENCODE Processing Pipeline da71cb4928d1a417b225bbeb64269fa9 https://www.encodeproject.org/files/ENCFF025STW/@@download/ENCFF025STW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF934ZVZ bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF060TFC, ENCFF068EQL 4346550 ENCODE Processing Pipeline 04397c841d1f7771cf3c71015a08840e https://www.encodeproject.org/files/ENCFF934ZVZ/@@download/ENCFF934ZVZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF403MMV bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF934ZVZ 11017800 ENCODE Processing Pipeline faef8382e4d688fb4a007d1a8408b4db https://www.encodeproject.org/files/ENCFF403MMV/@@download/ENCFF403MMV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF424ZOS bigBed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF229WQW 11510970 ENCODE Processing Pipeline d700cfa6fbe5dd8af009f4f22c98a39f https://www.encodeproject.org/files/ENCFF424ZOS/@@download/ENCFF424ZOS.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF746CIL bed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF025STW, ENCFF229WQW, ENCFF934ZVZ 805043 ENCODE Processing Pipeline a854e71bdfcc17eb98e8c2ff896d8bbb https://www.encodeproject.org/files/ENCFF746CIL/@@download/ENCFF746CIL.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF871THM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF746CIL 1430505 ENCODE Processing Pipeline c6efe1f3cb2ee84cb836a49be210687c https://www.encodeproject.org/files/ENCFF871THM/@@download/ENCFF871THM.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF000OIF bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OIR 728357068 Richard Myers, HAIB 3fa6a3fcd8dc53595e232355104af29c https://www.encodeproject.org/files/ENCFF000OIF/@@download/ENCFF000OIF.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIG bigBed broadPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZW 1278348 Richard Myers, HAIB 8c31221e920ba020359ce003e04c5ab3 https://www.encodeproject.org/files/ENCFF000OIG/@@download/ENCFF000OIG.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIH bigBed broadPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZX 1159080 Richard Myers, HAIB e1f5c6745d147fd72754e1bb6019423e https://www.encodeproject.org/files/ENCFF000OIH/@@download/ENCFF000OIH.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OII bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OIT 880137668 Richard Myers, HAIB f55c773a00eefdfd3bc15562999da582 https://www.encodeproject.org/files/ENCFF000OII/@@download/ENCFF000OII.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIK bigWig raw signal ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 33562910 Richard Myers, HAIB 64e45e93c5372916d79776cc37760e0a https://www.encodeproject.org/files/ENCFF000OIK/@@download/ENCFF000OIK.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OIL bigWig raw signal ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36751976 Richard Myers, HAIB 38944650b1a637d665e5425e56fe2adf https://www.encodeproject.org/files/ENCFF000OIL/@@download/ENCFF000OIL.bigWig hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OIR fastq reads ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 889516031 Richard Myers, HAIB cca243f091bce9050b9d5d64ba64192e https://www.encodeproject.org/files/ENCFF000OIR/@@download/ENCFF000OIR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OIT fastq reads ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 891766558 Richard Myers, HAIB 0faee68e33abfa19325bc6be0092e94d https://www.encodeproject.org/files/ENCFF000OIT/@@download/ENCFF000OIT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF001TZW bed broadPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 663194 Richard Myers, HAIB b07d8d41df4db864e7022aaa3c6f1335 https://www.encodeproject.org/files/ENCFF001TZW/@@download/ENCFF001TZW.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TZX bed broadPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 592546 Richard Myers, HAIB c39b3bef12ca1619611a15b70be817e6 https://www.encodeproject.org/files/ENCFF001TZX/@@download/ENCFF001TZX.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CIG bed narrowPeak optimal idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 335450 ENCODE Consortium Analysis Working Group 5f2bb1c4cc1250ef7ae35e464dcd390b https://www.encodeproject.org/files/ENCFF002CIG/@@download/ENCFF002CIG.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF788PEL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIG 848361 ENCODE Consortium e3eb81b8ef239b3ae1399c3aac21a2c8 https://www.encodeproject.org/files/ENCFF788PEL/@@download/ENCFF788PEL.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF102LCM bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIR, ENCFF643CGH 559647361 ENCODE Processing Pipeline 79252433b5481bd2313da115f8620ef2 https://www.encodeproject.org/files/ENCFF102LCM/@@download/ENCFF102LCM.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF967NMW bam unfiltered alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIR, ENCFF643CGH 1081137042 ENCODE Processing Pipeline be6a346b05b5856d0f9ff5a2dad32099 https://www.encodeproject.org/files/ENCFF967NMW/@@download/ENCFF967NMW.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF253DGW bam unfiltered alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIT, ENCFF643CGH 1123202029 ENCODE Processing Pipeline a41206059c68977eca25329c2c473935 https://www.encodeproject.org/files/ENCFF253DGW/@@download/ENCFF253DGW.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF810NAZ bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIT, ENCFF643CGH 712300408 ENCODE Processing Pipeline 42943b088451938fb38824be88de2290 https://www.encodeproject.org/files/ENCFF810NAZ/@@download/ENCFF810NAZ.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF629KMZ bam unfiltered alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIR, ENCFF807MUK 1080895147 ENCODE Processing Pipeline 6e3975a6bb47e21e805380be8981984f https://www.encodeproject.org/files/ENCFF629KMZ/@@download/ENCFF629KMZ.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF304KVB bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIR, ENCFF807MUK 553525130 ENCODE Processing Pipeline 49c99e6a7a5dbf539c9b3c9df38f8ea9 https://www.encodeproject.org/files/ENCFF304KVB/@@download/ENCFF304KVB.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF381JIW bam unfiltered alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIT, ENCFF807MUK 1121712225 ENCODE Processing Pipeline fd54526bb728c7c4f9ec747bde21839f https://www.encodeproject.org/files/ENCFF381JIW/@@download/ENCFF381JIW.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF512CKS bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIT, ENCFF807MUK 708371792 ENCODE Processing Pipeline 1c7d496ddb483fd84c392549a89d09ba https://www.encodeproject.org/files/ENCFF512CKS/@@download/ENCFF512CKS.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF263EFS bigBed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF070YDC 11886526 ENCODE Processing Pipeline 4b5e82ea3939b67b06b7d73ee574fd89 https://www.encodeproject.org/files/ENCFF263EFS/@@download/ENCFF263EFS.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF633LKQ bed narrowPeak conservative idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF024AEU, ENCFF070YDC, ENCFF419RSJ, ENCFF775QFU 451513 ENCODE Processing Pipeline 1f641e5ed53c1f6e70a0f354d2eea4bd https://www.encodeproject.org/files/ENCFF633LKQ/@@download/ENCFF633LKQ.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF650DWL bigWig signal p-value ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF810NAZ, ENCFF857FLV 335079989 ENCODE Processing Pipeline 9680408ed6d3e025f216b41ead9cd072 https://www.encodeproject.org/files/ENCFF650DWL/@@download/ENCFF650DWL.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF362TSD bigBed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF024AEU 11988440 ENCODE Processing Pipeline af1b43aa8e302b441db50d779c7945ce https://www.encodeproject.org/files/ENCFF362TSD/@@download/ENCFF362TSD.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF549NCY bigWig signal p-value ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF102LCM, ENCFF810NAZ, ENCFF857FLV 351048542 ENCODE Processing Pipeline 9599ca2e15303d9231e7c45db530852c https://www.encodeproject.org/files/ENCFF549NCY/@@download/ENCFF549NCY.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF461ODG bigWig fold change over control ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102LCM, ENCFF857FLV 192513123 ENCODE Processing Pipeline afc59f127d8a2a27464326b44e087cb1 https://www.encodeproject.org/files/ENCFF461ODG/@@download/ENCFF461ODG.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF775QFU bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102LCM, ENCFF857FLV 6161211 ENCODE Processing Pipeline e134b9b5d71d7353e5aa4fff53d97f0b https://www.encodeproject.org/files/ENCFF775QFU/@@download/ENCFF775QFU.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF205ZZA bed narrowPeak optimal idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF024AEU, ENCFF070YDC, ENCFF419RSJ, ENCFF775QFU 482045 ENCODE Processing Pipeline d5df0ae4e09dc935d99566c73f08b6e3 https://www.encodeproject.org/files/ENCFF205ZZA/@@download/ENCFF205ZZA.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF457EXX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF205ZZA 1052292 ENCODE Processing Pipeline 64cb5358320c415149912b0ccaada9e6 https://www.encodeproject.org/files/ENCFF457EXX/@@download/ENCFF457EXX.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF271QNM bigWig signal p-value ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102LCM, ENCFF857FLV 295439959 ENCODE Processing Pipeline 7446f191a829ac1aa8091d674b83d952 https://www.encodeproject.org/files/ENCFF271QNM/@@download/ENCFF271QNM.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF543NDS bigWig fold change over control ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF810NAZ, ENCFF857FLV 255538882 ENCODE Processing Pipeline 2c109d1f42087c0daa0ea200ba6a596f https://www.encodeproject.org/files/ENCFF543NDS/@@download/ENCFF543NDS.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF998MBP bigWig fold change over control ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF102LCM, ENCFF810NAZ, ENCFF857FLV 390880232 ENCODE Processing Pipeline 842354ffbf6bbdc22e995de7bb3c38ef https://www.encodeproject.org/files/ENCFF998MBP/@@download/ENCFF998MBP.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF070YDC bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF810NAZ, ENCFF857FLV 6295058 ENCODE Processing Pipeline e44c60aebd5b4532b659ee664caabd35 https://www.encodeproject.org/files/ENCFF070YDC/@@download/ENCFF070YDC.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF024AEU bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF102LCM, ENCFF810NAZ, ENCFF857FLV 7053554 ENCODE Processing Pipeline bf1d591d535b8ab505cff96727af456d https://www.encodeproject.org/files/ENCFF024AEU/@@download/ENCFF024AEU.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF383EBR bigBed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF775QFU 11406876 ENCODE Processing Pipeline ba52ed5e25ee1746239c70532f5ae899 https://www.encodeproject.org/files/ENCFF383EBR/@@download/ENCFF383EBR.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF272EBE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF633LKQ 1006333 ENCODE Processing Pipeline 4d23a38a347827366fbd54e06e051dc4 https://www.encodeproject.org/files/ENCFF272EBE/@@download/ENCFF272EBE.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF664IBD bigWig signal p-value ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF304KVB, ENCFF512CKS, ENCFF864ASU 351602804 ENCODE Processing Pipeline 86f504c7925b63edee0a024656589d01 https://www.encodeproject.org/files/ENCFF664IBD/@@download/ENCFF664IBD.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF725HKP bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF304KVB, ENCFF864ASU 6156486 ENCODE Processing Pipeline a6bc49f80eeec86bec0c7bdef7051b36 https://www.encodeproject.org/files/ENCFF725HKP/@@download/ENCFF725HKP.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF524QYS bed narrowPeak conservative idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF333UMD, ENCFF409BYD, ENCFF725HKP 407406 ENCODE Processing Pipeline e93ed30de4aeb7cfb2a88bf3f5e25e79 https://www.encodeproject.org/files/ENCFF524QYS/@@download/ENCFF524QYS.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF771SMT bigWig signal p-value ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF512CKS, ENCFF864ASU 337254440 ENCODE Processing Pipeline 4b321ca61a3c4d624c057d5fb7a7630e https://www.encodeproject.org/files/ENCFF771SMT/@@download/ENCFF771SMT.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF333UMD bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF512CKS, ENCFF864ASU 6362058 ENCODE Processing Pipeline 282a4378128a43c6e1b884bdb02b42e3 https://www.encodeproject.org/files/ENCFF333UMD/@@download/ENCFF333UMD.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF509SBU bigBed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF725HKP 11405931 ENCODE Processing Pipeline fe9ee59cc24140598bf2cca6a73f835a https://www.encodeproject.org/files/ENCFF509SBU/@@download/ENCFF509SBU.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF523YAC bigBed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF333UMD 11963313 ENCODE Processing Pipeline 5f917a0d4a25ab054b0c3aafe7848533 https://www.encodeproject.org/files/ENCFF523YAC/@@download/ENCFF523YAC.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF738VAS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF887VSS 996000 ENCODE Processing Pipeline 7390d87d7eaa3e3d79357061b2ca36ec https://www.encodeproject.org/files/ENCFF738VAS/@@download/ENCFF738VAS.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF989ZKQ bigWig signal p-value ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF304KVB, ENCFF864ASU 332124056 ENCODE Processing Pipeline 5aab2fa1686cca48c11d96e1fceaf629 https://www.encodeproject.org/files/ENCFF989ZKQ/@@download/ENCFF989ZKQ.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF409BYD bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF304KVB, ENCFF512CKS, ENCFF864ASU 6826946 ENCODE Processing Pipeline 1939bdda0ef2e8534d9799c664babe29 https://www.encodeproject.org/files/ENCFF409BYD/@@download/ENCFF409BYD.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF288OCG bigBed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF409BYD 11756996 ENCODE Processing Pipeline 1c3f40a494ba6aa3088efb9181467643 https://www.encodeproject.org/files/ENCFF288OCG/@@download/ENCFF288OCG.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF174ECR bigWig fold change over control ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF304KVB, ENCFF512CKS, ENCFF864ASU 388580587 ENCODE Processing Pipeline 8734afabfadb75b7e527a7000406d168 https://www.encodeproject.org/files/ENCFF174ECR/@@download/ENCFF174ECR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF914IHS bigWig fold change over control ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF304KVB, ENCFF864ASU 192087158 ENCODE Processing Pipeline f2ddff2a7876cf419ed00a1c6185ee7a https://www.encodeproject.org/files/ENCFF914IHS/@@download/ENCFF914IHS.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF105AYM bigWig fold change over control ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF512CKS, ENCFF864ASU 257703881 ENCODE Processing Pipeline 4daee20e0b4a5448fd74161b6b0f7aeb https://www.encodeproject.org/files/ENCFF105AYM/@@download/ENCFF105AYM.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF282ATZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF524QYS 944736 ENCODE Processing Pipeline ae0647339093e008195d53dc690c6546 https://www.encodeproject.org/files/ENCFF282ATZ/@@download/ENCFF282ATZ.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF887VSS bed narrowPeak optimal idr thresholded peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF333UMD, ENCFF409BYD, ENCFF725HKP 439631 ENCODE Processing Pipeline d3b237e3899e70e156920354564054ab https://www.encodeproject.org/files/ENCFF887VSS/@@download/ENCFF887VSS.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000XVG bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKP 189529 Michael Snyder, Stanford 7faefce08a6b010fd186287872d27339 https://www.encodeproject.org/files/ENCFF000XVG/@@download/ENCFF000XVG.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVH bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XVP 371115152 Michael Snyder, Stanford a6f9c491c4ec5ed3cbcc886922b992c3 https://www.encodeproject.org/files/ENCFF000XVH/@@download/ENCFF000XVH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVI bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XVR 373810588 Michael Snyder, Stanford 6a4689a4ad23731203f29f65dec20e1d https://www.encodeproject.org/files/ENCFF000XVI/@@download/ENCFF000XVI.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVJ bigWig signal ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 446476816 Michael Snyder, Stanford 9aa2ff1081a1b9f08206046a588f8ede https://www.encodeproject.org/files/ENCFF000XVJ/@@download/ENCFF000XVJ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XVP fastq reads ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 973091714 Michael Snyder, Stanford e28dbba53b66e60168ef5f7c5ab98ee9 https://www.encodeproject.org/files/ENCFF000XVP/@@download/ENCFF000XVP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVR fastq reads ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1001954684 Michael Snyder, Stanford c4f8822dda9cf612d60aab0a4f55bc39 https://www.encodeproject.org/files/ENCFF000XVR/@@download/ENCFF000XVR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKP bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 69650 Michael Snyder, Stanford 93490f7f74f8c8cb15d2f02f087ed272 https://www.encodeproject.org/files/ENCFF001VKP/@@download/ENCFF001VKP.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CUM bed narrowPeak optimal idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 52778 ENCODE Consortium Analysis Working Group d5d6942ab0b56b0696a204cbee6d7d0a https://www.encodeproject.org/files/ENCFF002CUM/@@download/ENCFF002CUM.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF128ANS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUM 226399 ENCODE Consortium 093402ecef81b6c699232d735d969221 https://www.encodeproject.org/files/ENCFF128ANS/@@download/ENCFF128ANS.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF787RXW bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVP, ENCFF643CGH 708386490 ENCODE Processing Pipeline dccd97a5410a7793c3c491deabff4c0e https://www.encodeproject.org/files/ENCFF787RXW/@@download/ENCFF787RXW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF559RYJ bam unfiltered alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVP, ENCFF643CGH 1159382672 ENCODE Processing Pipeline 3875d8d395b014cc8bab5b8239f50dd7 https://www.encodeproject.org/files/ENCFF559RYJ/@@download/ENCFF559RYJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF101XWQ bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVR, ENCFF643CGH 721054374 ENCODE Processing Pipeline 31363ba69c694d683465846b1f3bc553 https://www.encodeproject.org/files/ENCFF101XWQ/@@download/ENCFF101XWQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF991AEO bam unfiltered alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVR, ENCFF643CGH 1203645877 ENCODE Processing Pipeline dd32f9440cc3f9795c8e2a9e2bd62739 https://www.encodeproject.org/files/ENCFF991AEO/@@download/ENCFF991AEO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF737CQG bam unfiltered alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVP, ENCFF807MUK 1153516919 ENCODE Processing Pipeline 44b353a6f516ad143174b690a0772038 https://www.encodeproject.org/files/ENCFF737CQG/@@download/ENCFF737CQG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF180OPA bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVP, ENCFF807MUK 708697626 ENCODE Processing Pipeline 09ff3abcd9774a363c1e01512fbbc37b https://www.encodeproject.org/files/ENCFF180OPA/@@download/ENCFF180OPA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF585QSQ bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVR, ENCFF807MUK 721303807 ENCODE Processing Pipeline 0d6d61976d66bcddcace8ad1a6364301 https://www.encodeproject.org/files/ENCFF585QSQ/@@download/ENCFF585QSQ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527ZVG bam unfiltered alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVR, ENCFF807MUK 1196883846 ENCODE Processing Pipeline e967d0daf166890a79b8603ef47610f8 https://www.encodeproject.org/files/ENCFF527ZVG/@@download/ENCFF527ZVG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF961NCT bigWig signal p-value ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF787RXW 524584039 ENCODE Processing Pipeline 1da5245daa8c82394b7262f1cd27d98c https://www.encodeproject.org/files/ENCFF961NCT/@@download/ENCFF961NCT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF672STB bigWig signal p-value ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF101XWQ, ENCFF165KZY 459071077 ENCODE Processing Pipeline c2744cc7f8be002b4b0c50c6d7abc961 https://www.encodeproject.org/files/ENCFF672STB/@@download/ENCFF672STB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182ZBU bigWig signal p-value ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF101XWQ, ENCFF165KZY, ENCFF787RXW 653588096 ENCODE Processing Pipeline 36043c94c0a6dc9ce933e92c6153a0a8 https://www.encodeproject.org/files/ENCFF182ZBU/@@download/ENCFF182ZBU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF131MKT bigWig fold change over control ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF101XWQ, ENCFF165KZY 392678827 ENCODE Processing Pipeline bdc8001f37581c1fa3b8c295d0b7113a https://www.encodeproject.org/files/ENCFF131MKT/@@download/ENCFF131MKT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379DOW bigWig fold change over control ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF787RXW 401273241 ENCODE Processing Pipeline 68295d883b4cb8451f0e54575ee83062 https://www.encodeproject.org/files/ENCFF379DOW/@@download/ENCFF379DOW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138MUF bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF101XWQ, ENCFF165KZY 4242209 ENCODE Processing Pipeline ed6fe370f6bbed57e02147bfee03c865 https://www.encodeproject.org/files/ENCFF138MUF/@@download/ENCFF138MUF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF032ECF bigWig fold change over control ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF101XWQ, ENCFF165KZY, ENCFF787RXW 657353284 ENCODE Processing Pipeline 1457f20803935a8c5ee7436c4fda7ec9 https://www.encodeproject.org/files/ENCFF032ECF/@@download/ENCFF032ECF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF124WQS bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF787RXW 4176398 ENCODE Processing Pipeline 60c8299c34f877ae434f69cf6463ec91 https://www.encodeproject.org/files/ENCFF124WQS/@@download/ENCFF124WQS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF359WRW bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF101XWQ, ENCFF165KZY, ENCFF787RXW 4721920 ENCODE Processing Pipeline e299abe1e97f6d2123f293941699919e https://www.encodeproject.org/files/ENCFF359WRW/@@download/ENCFF359WRW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF166IHW bed narrowPeak conservative idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF124WQS, ENCFF138MUF, ENCFF359WRW, ENCFF419RSJ 37674 ENCODE Processing Pipeline 4c9563c87b246e45077fe114190dd154 https://www.encodeproject.org/files/ENCFF166IHW/@@download/ENCFF166IHW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF788SOI bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF124WQS 10742825 ENCODE Processing Pipeline c5d1e89e072df636a823416ec8b42724 https://www.encodeproject.org/files/ENCFF788SOI/@@download/ENCFF788SOI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF131BMI bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF138MUF 10725840 ENCODE Processing Pipeline 461908d15acb05162c60bf282eeaa45e https://www.encodeproject.org/files/ENCFF131BMI/@@download/ENCFF131BMI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF211IWQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF166IHW 101415 ENCODE Processing Pipeline 08b08d4d2de3a4610d0d93b83478f01a https://www.encodeproject.org/files/ENCFF211IWQ/@@download/ENCFF211IWQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF806DIT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF418DKQ 125130 ENCODE Processing Pipeline ef6c75a22cf76986b34ed502dfd70df3 https://www.encodeproject.org/files/ENCFF806DIT/@@download/ENCFF806DIT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF404LGC bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359WRW 11304275 ENCODE Processing Pipeline 6c209eb97f47d5f52a6afc379a2cf2e2 https://www.encodeproject.org/files/ENCFF404LGC/@@download/ENCFF404LGC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF418DKQ bed narrowPeak optimal idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF124WQS, ENCFF138MUF, ENCFF359WRW, ENCFF419RSJ 40422 ENCODE Processing Pipeline 7c72b8a143475dc3e7a1fa34f52a02e8 https://www.encodeproject.org/files/ENCFF418DKQ/@@download/ENCFF418DKQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF152ZIX bigWig signal p-value ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF180OPA 506442289 ENCODE Processing Pipeline d0c73d4c03cbf0719f2c7f02b06183f6 https://www.encodeproject.org/files/ENCFF152ZIX/@@download/ENCFF152ZIX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198FFT bigWig signal p-value ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585QSQ 462591632 ENCODE Processing Pipeline fc5ce31ca2d9df7a77c00208930a67f9 https://www.encodeproject.org/files/ENCFF198FFT/@@download/ENCFF198FFT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF012KHG bigWig signal p-value ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF180OPA, ENCFF585QSQ 680319922 ENCODE Processing Pipeline ff90863a24c3c4a1cf0745b9ec7f4906 https://www.encodeproject.org/files/ENCFF012KHG/@@download/ENCFF012KHG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF203OJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF972NIR 103031 ENCODE Processing Pipeline 860993b3c9c7336d2f558aa836eda5ca https://www.encodeproject.org/files/ENCFF203OJO/@@download/ENCFF203OJO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF785WIA bigWig fold change over control ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF180OPA 399251932 ENCODE Processing Pipeline 2940edd6920b3ececf7d25f929eff55b https://www.encodeproject.org/files/ENCFF785WIA/@@download/ENCFF785WIA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF535MDK bigWig fold change over control ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585QSQ 393049627 ENCODE Processing Pipeline b9f02649bcc5581fbd5eca5e601ab552 https://www.encodeproject.org/files/ENCFF535MDK/@@download/ENCFF535MDK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864QJF bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF180OPA 4206872 ENCODE Processing Pipeline 526e76f6fb517d1064424ac7cbfeb193 https://www.encodeproject.org/files/ENCFF864QJF/@@download/ENCFF864QJF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF839ZVC bigWig fold change over control ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF180OPA, ENCFF585QSQ 650623476 ENCODE Processing Pipeline 6eaa0fa3d27a39d7b7a1e871ed01d8c9 https://www.encodeproject.org/files/ENCFF839ZVC/@@download/ENCFF839ZVC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228KKV bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF180OPA, ENCFF585QSQ 4818330 ENCODE Processing Pipeline 11dc71c662dd6b2d034098805e9cc579 https://www.encodeproject.org/files/ENCFF228KKV/@@download/ENCFF228KKV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF712KTC bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF864QJF 10769404 ENCODE Processing Pipeline 78dea8c5ffd9f3def362710541e3ab03 https://www.encodeproject.org/files/ENCFF712KTC/@@download/ENCFF712KTC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF317FBN bed narrowPeak conservative idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF228KKV, ENCFF864QJF, ENCFF966VOH 37368 ENCODE Processing Pipeline 866375a6d00b68700debed5ee94f8cba https://www.encodeproject.org/files/ENCFF317FBN/@@download/ENCFF317FBN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF966VOH bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585QSQ 4265470 ENCODE Processing Pipeline e94e9ea4c5ead089d95cb4e220ffb26e https://www.encodeproject.org/files/ENCFF966VOH/@@download/ENCFF966VOH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF398CEU bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF228KKV 11352875 ENCODE Processing Pipeline f0ab18556e158be066986d9500776e64 https://www.encodeproject.org/files/ENCFF398CEU/@@download/ENCFF398CEU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF111ISX bigBed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF966VOH 10826875 ENCODE Processing Pipeline e166d1d08f0dd881d0bfe7b1d532c697 https://www.encodeproject.org/files/ENCFF111ISX/@@download/ENCFF111ISX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF857YEM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF317FBN 100709 ENCODE Processing Pipeline 9fa3a126a8e6b76e51e006d49b618c6a https://www.encodeproject.org/files/ENCFF857YEM/@@download/ENCFF857YEM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF972NIR bed narrowPeak optimal idr thresholded peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF228KKV, ENCFF864QJF, ENCFF966VOH 38996 ENCODE Processing Pipeline 9279471da999b426ccbb6fc9df0cb304 https://www.encodeproject.org/files/ENCFF972NIR/@@download/ENCFF972NIR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF425WHZ fastq reads ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1889794788 Richard Myers, HAIB 7a379a0f3dc9fa398e0397e77f646535 https://www.encodeproject.org/files/ENCFF425WHZ/@@download/ENCFF425WHZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF269CSY bam unfiltered alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 76 ENCFF425WHZ, ENCFF643CGH 2121959150 ENCODE Processing Pipeline 6ea25854ad208c83b48775394187bcec https://www.encodeproject.org/files/ENCFF269CSY/@@download/ENCFF269CSY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF818JLN bam unfiltered alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 76 ENCFF425WHZ, ENCFF807MUK 2115453074 ENCODE Processing Pipeline 94bd89a0d92f9360bd864a1499e73749 https://www.encodeproject.org/files/ENCFF818JLN/@@download/ENCFF818JLN.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF668RWQ bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 76 ENCFF425WHZ, ENCFF643CGH 1623664290 ENCODE Processing Pipeline 2bc58d568ef98037dfeaf5202f800f1d https://www.encodeproject.org/files/ENCFF668RWQ/@@download/ENCFF668RWQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF299GON bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 76 ENCFF425WHZ, ENCFF807MUK 1622317513 ENCODE Processing Pipeline a005208e70dbd6c49f3c65fc6802d637 https://www.encodeproject.org/files/ENCFF299GON/@@download/ENCFF299GON.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF930REO fastq reads ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 2012890098 Richard Myers, HAIB 10657786f57febd1db5877109cb0e5d3 https://www.encodeproject.org/files/ENCFF930REO/@@download/ENCFF930REO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF397ZXH bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF930REO 1323298812 ENCODE Processing Pipeline 618274171efd2794a1fb70de3ee4cb8b https://www.encodeproject.org/files/ENCFF397ZXH/@@download/ENCFF397ZXH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF215QSN bam unfiltered alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 76 ENCFF807MUK, ENCFF930REO 2310437941 ENCODE Processing Pipeline d61a6041f85533bb838c6a957af161f5 https://www.encodeproject.org/files/ENCFF215QSN/@@download/ENCFF215QSN.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF507YWQ bam unfiltered alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF930REO 2316410542 ENCODE Processing Pipeline da85ebbb2e25872e07d5eff0f216f1d5 https://www.encodeproject.org/files/ENCFF507YWQ/@@download/ENCFF507YWQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF728PFP bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 76 ENCFF807MUK, ENCFF930REO 1322166885 ENCODE Processing Pipeline cd0fa4ae99c29b8728d7508a07910019 https://www.encodeproject.org/files/ENCFF728PFP/@@download/ENCFF728PFP.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF635VBR bigWig signal p-value ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF728PFP 554653830 ENCODE Processing Pipeline dc2035907a5be4b2e0486dd029429488 https://www.encodeproject.org/files/ENCFF635VBR/@@download/ENCFF635VBR.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF787RUK bigWig signal p-value ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF299GON, ENCFF728PFP 648390553 ENCODE Processing Pipeline dcd9344166cebc909c46cf2a6f62fbdb https://www.encodeproject.org/files/ENCFF787RUK/@@download/ENCFF787RUK.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF342GMV bigWig signal p-value ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF397ZXH, ENCFF668RWQ 654303633 ENCODE Processing Pipeline d9017af2035c6c03f48663d9b31c0f65 https://www.encodeproject.org/files/ENCFF342GMV/@@download/ENCFF342GMV.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF211UES bigWig fold change over control ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF299GON, ENCFF728PFP 899562845 ENCODE Processing Pipeline 5f3e1c7c2c2b1ccd821b5103d115193f https://www.encodeproject.org/files/ENCFF211UES/@@download/ENCFF211UES.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF255YMD bigBed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF330KXU 12863281 ENCODE Processing Pipeline b39c01d0b826872096cfaadbea5c0969 https://www.encodeproject.org/files/ENCFF255YMD/@@download/ENCFF255YMD.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF541YFL bed narrowPeak conservative idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF220XZR, ENCFF330KXU, ENCFF570KPZ 249138 ENCODE Processing Pipeline 0e26a53b25b2dfe73ae02dd29e0c0ccb https://www.encodeproject.org/files/ENCFF541YFL/@@download/ENCFF541YFL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF079IXS bigBed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF220XZR 12532052 ENCODE Processing Pipeline 32d99e1d6a1439a2aa547000194c7a6a https://www.encodeproject.org/files/ENCFF079IXS/@@download/ENCFF079IXS.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF581GZT bigBed narrowPeak conservative idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF541YFL 610529 ENCODE Processing Pipeline d59894cca55e3873026fd5fc88874a19 https://www.encodeproject.org/files/ENCFF581GZT/@@download/ENCFF581GZT.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF655OJN bigWig fold change over control ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF668RWQ 614502865 ENCODE Processing Pipeline f64f0effda0f8fbae45f1de591d3611c https://www.encodeproject.org/files/ENCFF655OJN/@@download/ENCFF655OJN.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF570KPZ bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF728PFP 6830604 ENCODE Processing Pipeline 6d6fe42ebf5a49bb3d74e0ac7002246e https://www.encodeproject.org/files/ENCFF570KPZ/@@download/ENCFF570KPZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF220XZR bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF299GON, ENCFF728PFP 7096447 ENCODE Processing Pipeline 2d17e5638107be9c0654ca4572b1cf52 https://www.encodeproject.org/files/ENCFF220XZR/@@download/ENCFF220XZR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF219IRI bigWig fold change over control ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF397ZXH 511387649 ENCODE Processing Pipeline d37f0564cfba4e627ecf0254cc1db1f6 https://www.encodeproject.org/files/ENCFF219IRI/@@download/ENCFF219IRI.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF702RXU bigWig signal p-value ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF299GON 692586557 ENCODE Processing Pipeline 687b5220ecb0ed9a2e42c5478bff2099 https://www.encodeproject.org/files/ENCFF702RXU/@@download/ENCFF702RXU.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF093KYW bigWig signal p-value ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF668RWQ 625560465 ENCODE Processing Pipeline ea473a2af763a2c2fe39608fa7198420 https://www.encodeproject.org/files/ENCFF093KYW/@@download/ENCFF093KYW.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF481NLD bigWig signal p-value ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF397ZXH 533507753 ENCODE Processing Pipeline 83976858e31b5147cc49553fab6e3cc2 https://www.encodeproject.org/files/ENCFF481NLD/@@download/ENCFF481NLD.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF330KXU bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF299GON 6795712 ENCODE Processing Pipeline ec1c6e519216a3150f0e5591041e020b https://www.encodeproject.org/files/ENCFF330KXU/@@download/ENCFF330KXU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF266XEA bigBed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF570KPZ 12371173 ENCODE Processing Pipeline ee5fe37d7d47dbbd487fb533d646fc36 https://www.encodeproject.org/files/ENCFF266XEA/@@download/ENCFF266XEA.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF199HFT bigWig fold change over control ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF299GON 679915728 ENCODE Processing Pipeline 6a9fb92ff306988c7fc675c233811a73 https://www.encodeproject.org/files/ENCFF199HFT/@@download/ENCFF199HFT.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF335WEW bigWig fold change over control ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF728PFP 514939416 ENCODE Processing Pipeline 8c7c872a6bcc336d14b14dd27c8fecc5 https://www.encodeproject.org/files/ENCFF335WEW/@@download/ENCFF335WEW.bigWig hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF789WBV bed narrowPeak optimal idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF220XZR, ENCFF330KXU, ENCFF570KPZ 329429 ENCODE Processing Pipeline 17ddadd5d0b6c439f1969776b27146a8 https://www.encodeproject.org/files/ENCFF789WBV/@@download/ENCFF789WBV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF842JDI bigBed narrowPeak optimal idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF789WBV 754652 ENCODE Processing Pipeline 32a2a5e382a3e4e7869ec71c5e9db45d https://www.encodeproject.org/files/ENCFF842JDI/@@download/ENCFF842JDI.bigBed hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF592WEY bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF397ZXH 6832903 ENCODE Processing Pipeline b52d15f876dfd2ad0b180fbaf2194b92 https://www.encodeproject.org/files/ENCFF592WEY/@@download/ENCFF592WEY.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF877RQP bigWig fold change over control ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF397ZXH, ENCFF668RWQ 910016123 ENCODE Processing Pipeline 61780c3a2c9a6a9cd7a02441ab00ba4a https://www.encodeproject.org/files/ENCFF877RQP/@@download/ENCFF877RQP.bigWig GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF209KVU bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF668RWQ 6482154 ENCODE Processing Pipeline 9dd1af51b30810ba31d228ee2fc26527 https://www.encodeproject.org/files/ENCFF209KVU/@@download/ENCFF209KVU.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF282NEQ bigBed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF592WEY 12378061 ENCODE Processing Pipeline 33aeb93154713994d80fbfdc4153a6e2 https://www.encodeproject.org/files/ENCFF282NEQ/@@download/ENCFF282NEQ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF815HHD bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF397ZXH, ENCFF668RWQ 7098389 ENCODE Processing Pipeline 9c6e16fd52a92323cfdb7e3c9c3308ac https://www.encodeproject.org/files/ENCFF815HHD/@@download/ENCFF815HHD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF982BXZ bigBed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF815HHD 12538300 ENCODE Processing Pipeline 55d3b124b614c32e28d1b61c221ca060 https://www.encodeproject.org/files/ENCFF982BXZ/@@download/ENCFF982BXZ.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF331HLK bigBed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF209KVU 13085353 ENCODE Processing Pipeline 6192efbdb761ff81fbfde5a00a25512d https://www.encodeproject.org/files/ENCFF331HLK/@@download/ENCFF331HLK.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF416QPD bed narrowPeak conservative idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF209KVU, ENCFF419RSJ, ENCFF592WEY, ENCFF815HHD 252048 ENCODE Processing Pipeline 2565d1112599c8b8ba9eb148c94fcf46 https://www.encodeproject.org/files/ENCFF416QPD/@@download/ENCFF416QPD.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF285UFG bigBed narrowPeak conservative idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF416QPD 615130 ENCODE Processing Pipeline 67891b205438fbf903a6c253edf00ef9 https://www.encodeproject.org/files/ENCFF285UFG/@@download/ENCFF285UFG.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF847BWZ bed narrowPeak optimal idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF209KVU, ENCFF419RSJ, ENCFF592WEY, ENCFF815HHD 359027 ENCODE Processing Pipeline 099937e6e3a07d0be645dfe05173ac1d https://www.encodeproject.org/files/ENCFF847BWZ/@@download/ENCFF847BWZ.bed.gz GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF483LIH bigBed narrowPeak optimal idr thresholded peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF847BWZ 804103 ENCODE Processing Pipeline 9db1ca242d408b440057d0d88c0ff008 https://www.encodeproject.org/files/ENCFF483LIH/@@download/ENCFF483LIH.bigBed GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF000VVS bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 439498438 Peggy Farnham, USC 471cf6b88573c9becd318020fa9cd052 https://www.encodeproject.org/files/ENCFF000VVS/@@download/ENCFF000VVS.bam hg19 archived low read length, low read depth missing derived_from control insufficient read depth ENCFF000VVT bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 693186617 Peggy Farnham, USC c7f43718ec0e2d44cc8067f35ba9baeb https://www.encodeproject.org/files/ENCFF000VVT/@@download/ENCFF000VVT.bam hg19 archived low read length, low read depth missing derived_from control insufficient read depth ENCFF000VVU bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEJ 1347626 Peggy Farnham, USC 24b56bc35de0aa0b28b1576afe0d2f38 https://www.encodeproject.org/files/ENCFF000VVU/@@download/ENCFF000VVU.bigBed hg19 archived low read length, low read depth control insufficient read depth ENCFF000VVV fastq reads ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 895921320 Peggy Farnham, USC 945112f33e7e976a7a7083bc64d9db0b https://www.encodeproject.org/files/ENCFF000VVV/@@download/ENCFF000VVV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length control insufficient read depth ENCFF000VVX fastq reads ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1253344955 Peggy Farnham, USC a3ea1577d93fa493115a0d7c26d66196 https://www.encodeproject.org/files/ENCFF000VVX/@@download/ENCFF000VVX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length control insufficient read depth ENCFF000VVZ bigWig signal ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 408312250 Peggy Farnham, USC 6d7e34e51d59f22fa463188b21197452 https://www.encodeproject.org/files/ENCFF000VVZ/@@download/ENCFF000VVZ.bigWig hg19 archived low read length, low read depth missing derived_from control insufficient read depth ENCFF001VEJ bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 511749 Peggy Farnham, USC c9cad861697c5dbe74451345e2ca78af https://www.encodeproject.org/files/ENCFF001VEJ/@@download/ENCFF001VEJ.bed.gz hg19 archived low read length, low read depth missing derived_from control insufficient read depth ENCFF002COU bed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 242594 ENCODE Consortium Analysis Working Group 4b26f9f15c2b8820c627e516850e9802 https://www.encodeproject.org/files/ENCFF002COU/@@download/ENCFF002COU.bed.gz hg19 archived low read length, low read depth missing derived_from control insufficient read depth ENCFF085PUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COU 621572 ENCODE Consortium f9daede870a2633f97cc7fe440488292 https://www.encodeproject.org/files/ENCFF085PUZ/@@download/ENCFF085PUZ.bigBed hg19 archived low read length, low read depth control insufficient read depth ENCFF392JYM bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF643CGH 1266628924 ENCODE Processing Pipeline c1406248e95782d36224f127fefd2633 https://www.encodeproject.org/files/ENCFF392JYM/@@download/ENCFF392JYM.bam GRCh38 released low read length, low read depth control insufficient read depth ENCFF045YYY bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF643CGH 610822083 ENCODE Processing Pipeline b8104f3e3d4f182bf34856dfd736e997 https://www.encodeproject.org/files/ENCFF045YYY/@@download/ENCFF045YYY.bam GRCh38 released low read length, low read depth control insufficient read depth ENCFF736MXP bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF643CGH 828196574 ENCODE Processing Pipeline 7bc29dbbbe4052edd7936e311c9af471 https://www.encodeproject.org/files/ENCFF736MXP/@@download/ENCFF736MXP.bam GRCh38 released low read length, low read depth control insufficient read depth ENCFF677FLS bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF643CGH 908630163 ENCODE Processing Pipeline f009e546170c76476cd5093c617db088 https://www.encodeproject.org/files/ENCFF677FLS/@@download/ENCFF677FLS.bam GRCh38 released low read length, low read depth control insufficient read depth ENCFF353MVL bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF807MUK 905489164 ENCODE Processing Pipeline 5fd50075fab5383f88c941153a21e1cf https://www.encodeproject.org/files/ENCFF353MVL/@@download/ENCFF353MVL.bam hg19 released low read length, low read depth control insufficient read depth ENCFF076DFZ bam unfiltered alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF807MUK 1261698037 ENCODE Processing Pipeline c256c941ef4b4eede7bb7fa16ce3b31b https://www.encodeproject.org/files/ENCFF076DFZ/@@download/ENCFF076DFZ.bam hg19 released low read length, low read depth control insufficient read depth ENCFF361LSB bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF807MUK 610923120 ENCODE Processing Pipeline 17bdbeced8295ba9bfd1bf229223f9d9 https://www.encodeproject.org/files/ENCFF361LSB/@@download/ENCFF361LSB.bam hg19 released low read length, low read depth control insufficient read depth ENCFF507DXP bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF807MUK 828492143 ENCODE Processing Pipeline 5514d739d1af72a0e15feb46991c61d0 https://www.encodeproject.org/files/ENCFF507DXP/@@download/ENCFF507DXP.bam hg19 released low read length, low read depth control insufficient read depth ENCFF248LVZ bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 253394825 ENCODE Processing Pipeline d97971628cf938c186511b4b7a5b5e9e https://www.encodeproject.org/files/ENCFF248LVZ/@@download/ENCFF248LVZ.bigWig hg19 released low read length, low read depth control insufficient read depth ENCFF561TGT bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 364374630 ENCODE Processing Pipeline 241c646fa5f5954905d6e3b1ce71f9f1 https://www.encodeproject.org/files/ENCFF561TGT/@@download/ENCFF561TGT.bigWig hg19 released low read length, low read depth control insufficient read depth ENCFF872DIW bed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF330XDW, ENCFF723VGS, ENCFF742JAC 228390 ENCODE Processing Pipeline 051337d90d90432bb5da5b3ff2d2a2d3 https://www.encodeproject.org/files/ENCFF872DIW/@@download/ENCFF872DIW.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF029ROP bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 220199939 ENCODE Processing Pipeline b2f6c86d5fc34cc1196f8b4d583830ad https://www.encodeproject.org/files/ENCFF029ROP/@@download/ENCFF029ROP.bigWig hg19 released low read length, low read depth control insufficient read depth ENCFF260XOG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF872DIW 560612 ENCODE Processing Pipeline 33b91b23623572751a1f42a4a5f1d8cc https://www.encodeproject.org/files/ENCFF260XOG/@@download/ENCFF260XOG.bigBed hg19 released low read length, low read depth control insufficient read depth ENCFF073XZC bed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF330XDW, ENCFF723VGS, ENCFF742JAC 239645 ENCODE Processing Pipeline 1e25bdbd10c76538c1fc79f86e4ff09f https://www.encodeproject.org/files/ENCFF073XZC/@@download/ENCFF073XZC.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF664YGF bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF361LSB, ENCFF420MOQ, ENCFF507DXP 205773063 ENCODE Processing Pipeline a82b75817f5824be36b6dadf09951f60 https://www.encodeproject.org/files/ENCFF664YGF/@@download/ENCFF664YGF.bigWig hg19 released low read length, low read depth control insufficient read depth ENCFF314HHD bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF361LSB, ENCFF420MOQ, ENCFF507DXP 535631410 ENCODE Processing Pipeline 5d3358e02d4d9f65a32b9f72c2ba25b8 https://www.encodeproject.org/files/ENCFF314HHD/@@download/ENCFF314HHD.bigWig hg19 released low read length, low read depth control insufficient read depth ENCFF742JAC bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF361LSB, ENCFF420MOQ, ENCFF507DXP 5236641 ENCODE Processing Pipeline 77f98d049ac451bce636f125e2b98150 https://www.encodeproject.org/files/ENCFF742JAC/@@download/ENCFF742JAC.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF723VGS bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 4593904 ENCODE Processing Pipeline 8e1ed270dfa1f118707f73a3211c49e7 https://www.encodeproject.org/files/ENCFF723VGS/@@download/ENCFF723VGS.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF814RRH bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF330XDW 12963170 ENCODE Processing Pipeline 6b895c32816a6c501d72a6683b22b94d https://www.encodeproject.org/files/ENCFF814RRH/@@download/ENCFF814RRH.bigBed hg19 released low read length, low read depth control insufficient read depth ENCFF595NDQ bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF742JAC 13058221 ENCODE Processing Pipeline 76aacc6e6a7d99e1550f1a777d5815a5 https://www.encodeproject.org/files/ENCFF595NDQ/@@download/ENCFF595NDQ.bigBed hg19 released low read length, low read depth control insufficient read depth ENCFF995ZNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF073XZC 582389 ENCODE Processing Pipeline d3cae8b05711affb288c675794902b8e https://www.encodeproject.org/files/ENCFF995ZNQ/@@download/ENCFF995ZNQ.bigBed hg19 released low read length, low read depth control insufficient read depth ENCFF330XDW bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 4789023 ENCODE Processing Pipeline dc036f29a85e560071e4222c704640c3 https://www.encodeproject.org/files/ENCFF330XDW/@@download/ENCFF330XDW.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF504KAH bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF723VGS 12736910 ENCODE Processing Pipeline e39be7058f90f40cd6af7352a371651e https://www.encodeproject.org/files/ENCFF504KAH/@@download/ENCFF504KAH.bigBed hg19 released low read length, low read depth control insufficient read depth ENCFF567ITH bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 209927126 ENCODE Processing Pipeline 3b2fec0466bbf10f9af75093b7eadcac https://www.encodeproject.org/files/ENCFF567ITH/@@download/ENCFF567ITH.bigWig hg19 released low read length, low read depth control insufficient read depth ENCFF089UNS bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF045YYY, ENCFF157YWH 219222263 ENCODE Processing Pipeline 6f3ba7a61f6339407ddae13cf09a5f87 https://www.encodeproject.org/files/ENCFF089UNS/@@download/ENCFF089UNS.bigWig GRCh38 released low read length, low read depth control insufficient read depth ENCFF361NCG bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF045YYY, ENCFF157YWH 248660028 ENCODE Processing Pipeline aea8e05a86f4b2ad071227bd2d6490b4 https://www.encodeproject.org/files/ENCFF361NCG/@@download/ENCFF361NCG.bigWig GRCh38 released low read length, low read depth control insufficient read depth ENCFF221JRL bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF157YWH, ENCFF736MXP 209960687 ENCODE Processing Pipeline f9dc6b505f0c7e3d117e7fa7bd445ddc https://www.encodeproject.org/files/ENCFF221JRL/@@download/ENCFF221JRL.bigWig GRCh38 released low read length, low read depth control insufficient read depth ENCFF131VOT bigWig signal p-value ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045YYY, ENCFF157YWH, ENCFF736MXP 207185522 ENCODE Processing Pipeline d58a3e2ace5aaca6003f1be41fa586fe https://www.encodeproject.org/files/ENCFF131VOT/@@download/ENCFF131VOT.bigWig GRCh38 released low read length, low read depth control insufficient read depth ENCFF111ORU bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF157YWH, ENCFF736MXP 360256899 ENCODE Processing Pipeline 42316f572b848e76a6c8ef648bea1890 https://www.encodeproject.org/files/ENCFF111ORU/@@download/ENCFF111ORU.bigWig GRCh38 released low read length, low read depth control insufficient read depth ENCFF935KTD bigWig fold change over control ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045YYY, ENCFF157YWH, ENCFF736MXP 538603922 ENCODE Processing Pipeline 39cc5006747f80fd77933655fae8cfe5 https://www.encodeproject.org/files/ENCFF935KTD/@@download/ENCFF935KTD.bigWig GRCh38 released low read length, low read depth control insufficient read depth ENCFF835CSR bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF045YYY, ENCFF157YWH 4600644 ENCODE Processing Pipeline 4a747552a0848962566b56ab49ce8bca https://www.encodeproject.org/files/ENCFF835CSR/@@download/ENCFF835CSR.bed.gz GRCh38 released low read length, low read depth control insufficient read depth ENCFF520TMF bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF157YWH, ENCFF736MXP 4817665 ENCODE Processing Pipeline 75b91ff1d9821a9cdce6e1764f412b61 https://www.encodeproject.org/files/ENCFF520TMF/@@download/ENCFF520TMF.bed.gz GRCh38 released low read length, low read depth control insufficient read depth ENCFF298JSC bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045YYY, ENCFF157YWH, ENCFF736MXP 5238280 ENCODE Processing Pipeline f673723e998bc7876bcb2e781dca2a9e https://www.encodeproject.org/files/ENCFF298JSC/@@download/ENCFF298JSC.bed.gz GRCh38 released low read length, low read depth control insufficient read depth ENCFF567CCI bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF835CSR 12788850 ENCODE Processing Pipeline f4b872d7ec593957400c6fc27973f449 https://www.encodeproject.org/files/ENCFF567CCI/@@download/ENCFF567CCI.bigBed GRCh38 released low read length, low read depth control insufficient read depth ENCFF420IVC bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF520TMF 12981951 ENCODE Processing Pipeline 59f28754f51826abeddcb54bb73c9f51 https://www.encodeproject.org/files/ENCFF420IVC/@@download/ENCFF420IVC.bigBed GRCh38 released low read length, low read depth control insufficient read depth ENCFF263QTO bigBed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298JSC 13044423 ENCODE Processing Pipeline 3fa8b119ec28bd0ce7f6adb07dd42fd0 https://www.encodeproject.org/files/ENCFF263QTO/@@download/ENCFF263QTO.bigBed GRCh38 released low read length, low read depth control insufficient read depth ENCFF045OQX bed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298JSC, ENCFF419RSJ, ENCFF520TMF, ENCFF835CSR 234145 ENCODE Processing Pipeline 2226697ad1edc5bec5c9572a24835a6c https://www.encodeproject.org/files/ENCFF045OQX/@@download/ENCFF045OQX.bed.gz GRCh38 released low read length, low read depth control insufficient read depth ENCFF090DZF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF045OQX 572987 ENCODE Processing Pipeline 7f4c406b9472553d09e8a469ea26e35c https://www.encodeproject.org/files/ENCFF090DZF/@@download/ENCFF090DZF.bigBed GRCh38 released low read length, low read depth control insufficient read depth ENCFF197ABX bed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF298JSC, ENCFF419RSJ, ENCFF520TMF, ENCFF835CSR 246335 ENCODE Processing Pipeline f01bf0f3a64cbf106fbd0595e0e83a83 https://www.encodeproject.org/files/ENCFF197ABX/@@download/ENCFF197ABX.bed.gz GRCh38 released low read length, low read depth control insufficient read depth ENCFF189FYY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF197ABX 596077 ENCODE Processing Pipeline 0b666d6c0896d57411ebf37ee8492214 https://www.encodeproject.org/files/ENCFF189FYY/@@download/ENCFF189FYY.bigBed GRCh38 released low read length, low read depth control insufficient read depth ENCFF000ZEL bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZFI 972278544 Peggy Farnham, USC 310b0f930469fdd5d8a8fbddf64ebe73 https://www.encodeproject.org/files/ENCFF000ZEL/@@download/ENCFF000ZEL.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZEM bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZFH 1697740328 Peggy Farnham, USC 3696b30baaf0f782fa7558880ce75378 https://www.encodeproject.org/files/ENCFF000ZEM/@@download/ENCFF000ZEM.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZEN bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPN 90508 Peggy Farnham, USC 3159344ee56a1981e486058c97145421 https://www.encodeproject.org/files/ENCFF000ZEN/@@download/ENCFF000ZEN.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZEO bigWig signal ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 380991206 Peggy Farnham, USC 57d54a89d49fdeb9a1bbd964b000bb3e https://www.encodeproject.org/files/ENCFF000ZEO/@@download/ENCFF000ZEO.bigWig hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZFH fastq reads ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 1501424018 Peggy Farnham, USC fe865fa0e8402fd848f42ac0ded22924 https://www.encodeproject.org/files/ENCFF000ZFH/@@download/ENCFF000ZFH.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZFI fastq reads ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 836311840 Peggy Farnham, USC 91d4d000285c36b4181a18be68e43648 https://www.encodeproject.org/files/ENCFF000ZFI/@@download/ENCFF000ZFI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VPN bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 6987 Peggy Farnham, USC 486d091c324ba33cf3e46740180ccdf7 https://www.encodeproject.org/files/ENCFF001VPN/@@download/ENCFF001VPN.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CYT bed narrowPeak optimal idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 7610 ENCODE Consortium Analysis Working Group b832826c9a2c89cd02efba3c468be676 https://www.encodeproject.org/files/ENCFF002CYT/@@download/ENCFF002CYT.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF707QFO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYT 96559 ENCODE Consortium c8f31bd9b54f2eb5bca1960b882bc95d https://www.encodeproject.org/files/ENCFF707QFO/@@download/ENCFF707QFO.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF917UQJ bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZFH, ENCFF643CGH 453141892 ENCODE Processing Pipeline 391aa1fdaf66705873809b60ee1ff28e https://www.encodeproject.org/files/ENCFF917UQJ/@@download/ENCFF917UQJ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF255DRN bigWig signal p-value ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF419SAY 347268237 ENCODE Processing Pipeline 3c466b2f3167662b5d920c4f91647143 https://www.encodeproject.org/files/ENCFF255DRN/@@download/ENCFF255DRN.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF212PHZ bigWig signal p-value ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF917UQJ 403118368 ENCODE Processing Pipeline d230ff59a893addb2a2d3e29f8726f24 https://www.encodeproject.org/files/ENCFF212PHZ/@@download/ENCFF212PHZ.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF781AEU bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107VAF 8971658 ENCODE Processing Pipeline dd3b83df090ed21b21ec44bf34e19513 https://www.encodeproject.org/files/ENCFF781AEU/@@download/ENCFF781AEU.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF013QRM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF323AWS 100451 ENCODE Processing Pipeline 9e6712cfeda8a6b11c1d95d3553cbbab https://www.encodeproject.org/files/ENCFF013QRM/@@download/ENCFF013QRM.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF419SAY bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZFI, ENCFF643CGH 330875443 ENCODE Processing Pipeline 0f2e50c526556d87c58c395e0c0dbba9 https://www.encodeproject.org/files/ENCFF419SAY/@@download/ENCFF419SAY.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF751BCV bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF641RNP 13201314 ENCODE Processing Pipeline 05948a8499a5c550db82bf3dfd7b1f9f https://www.encodeproject.org/files/ENCFF751BCV/@@download/ENCFF751BCV.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF883FSC bed narrowPeak conservative idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107VAF, ENCFF419RSJ, ENCFF641RNP, ENCFF946QMH 6549 ENCODE Processing Pipeline 741d83b1be98f8b196f1317bef91ba78 https://www.encodeproject.org/files/ENCFF883FSC/@@download/ENCFF883FSC.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF323AWS bed narrowPeak optimal idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107VAF, ENCFF419RSJ, ENCFF641RNP, ENCFF946QMH 7515 ENCODE Processing Pipeline d9d7782ccf01187a959d1c8b960d9165 https://www.encodeproject.org/files/ENCFF323AWS/@@download/ENCFF323AWS.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF147WKQ bam unfiltered alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZFI, ENCFF643CGH 974730005 ENCODE Processing Pipeline 9fce0cbe45e7b60d2be61f34f0463eba https://www.encodeproject.org/files/ENCFF147WKQ/@@download/ENCFF147WKQ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF421FAR bam unfiltered alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZFH, ENCFF643CGH 1705319650 ENCODE Processing Pipeline d5b8afe15996e1dfebad7cafcb2a7e72 https://www.encodeproject.org/files/ENCFF421FAR/@@download/ENCFF421FAR.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF771RPT bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF946QMH 10649409 ENCODE Processing Pipeline ff709a214bc4f760dfd831108590e0fc https://www.encodeproject.org/files/ENCFF771RPT/@@download/ENCFF771RPT.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF641WUE bigWig fold change over control ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF917UQJ 229543023 ENCODE Processing Pipeline 61a8c444eda8c20c4b2a1e4de1e9a3e6 https://www.encodeproject.org/files/ENCFF641WUE/@@download/ENCFF641WUE.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF641RNP bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF419SAY, ENCFF917UQJ 5057158 ENCODE Processing Pipeline 5da2ddeb380094b8f07b7875385f3b69 https://www.encodeproject.org/files/ENCFF641RNP/@@download/ENCFF641RNP.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF484RPD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF883FSC 97462 ENCODE Processing Pipeline e671e26ab23465592ca739f01059fe12 https://www.encodeproject.org/files/ENCFF484RPD/@@download/ENCFF484RPD.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF388VDO bigWig fold change over control ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF419SAY, ENCFF917UQJ 356760008 ENCODE Processing Pipeline fcfe25c09e40a981b447baa4fb49154b https://www.encodeproject.org/files/ENCFF388VDO/@@download/ENCFF388VDO.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF107VAF bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF419SAY 3759397 ENCODE Processing Pipeline 64e11601753af2b69268ee25d8b4e838 https://www.encodeproject.org/files/ENCFF107VAF/@@download/ENCFF107VAF.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF946QMH bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF917UQJ 4469699 ENCODE Processing Pipeline b798da7121cdb7bd1038415f164fd683 https://www.encodeproject.org/files/ENCFF946QMH/@@download/ENCFF946QMH.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF597FQY bigWig signal p-value ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF419SAY, ENCFF917UQJ 510787010 ENCODE Processing Pipeline a5a1ffc9674606c405fd83f84ca498d7 https://www.encodeproject.org/files/ENCFF597FQY/@@download/ENCFF597FQY.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF312RQR bigWig fold change over control ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF419SAY 188698780 ENCODE Processing Pipeline c2675a1293d0d0fb93d52aa4df76773c https://www.encodeproject.org/files/ENCFF312RQR/@@download/ENCFF312RQR.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF077MWD bam unfiltered alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZFH, ENCFF807MUK 1698659020 ENCODE Processing Pipeline 6015ce9b37d1313e3e18b18352885b00 https://www.encodeproject.org/files/ENCFF077MWD/@@download/ENCFF077MWD.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF677CAG bigWig signal p-value ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF232PMQ 414344289 ENCODE Processing Pipeline 828cb4d1f0e5a3ed35ba92c232ccab59 https://www.encodeproject.org/files/ENCFF677CAG/@@download/ENCFF677CAG.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF384MYM bigWig fold change over control ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF232PMQ 189133982 ENCODE Processing Pipeline 17095a764d3af6e57bfacb95aff9689e https://www.encodeproject.org/files/ENCFF384MYM/@@download/ENCFF384MYM.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF231XHO bam unfiltered alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZFI, ENCFF807MUK 972737810 ENCODE Processing Pipeline c86c854ad308eab40bdd7768170198f2 https://www.encodeproject.org/files/ENCFF231XHO/@@download/ENCFF231XHO.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF656PTN bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZFH, ENCFF807MUK 453435524 ENCODE Processing Pipeline 731c46704a14be5203f24ed4de41b416 https://www.encodeproject.org/files/ENCFF656PTN/@@download/ENCFF656PTN.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF680PUP bigWig signal p-value ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF656PTN 403513469 ENCODE Processing Pipeline 9aa3fab6ea0ca505a5a4d097b55051bf https://www.encodeproject.org/files/ENCFF680PUP/@@download/ENCFF680PUP.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF232PMQ bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZFI, ENCFF807MUK 331155840 ENCODE Processing Pipeline fd673b8b39e6e0178acdf106afc46635 https://www.encodeproject.org/files/ENCFF232PMQ/@@download/ENCFF232PMQ.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF555CQE bigWig fold change over control ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF656PTN 227779283 ENCODE Processing Pipeline ae5907d54107b7febf9b4a943c1e6b52 https://www.encodeproject.org/files/ENCFF555CQE/@@download/ENCFF555CQE.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF836LBG bed narrowPeak optimal idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF337RTD, ENCFF556HBG, ENCFF565OZP 7351 ENCODE Processing Pipeline ee40819a3e319921e26d72427860725d https://www.encodeproject.org/files/ENCFF836LBG/@@download/ENCFF836LBG.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF218UAN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF836LBG 89261 ENCODE Processing Pipeline 409934c4ccf50e43dc04753910730350 https://www.encodeproject.org/files/ENCFF218UAN/@@download/ENCFF218UAN.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF556HBG bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF232PMQ 3877075 ENCODE Processing Pipeline 7b1aef55c64986987534c8007ecdb9d7 https://www.encodeproject.org/files/ENCFF556HBG/@@download/ENCFF556HBG.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF447RBZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF250QWW 97909 ENCODE Processing Pipeline f51d288ab4e2afdb7e00fc5789ff0230 https://www.encodeproject.org/files/ENCFF447RBZ/@@download/ENCFF447RBZ.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF242HCM bigWig signal p-value ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF232PMQ, ENCFF656PTN 403176546 ENCODE Processing Pipeline d9f7bbc9bd484ce3725d82cafeb0b3af https://www.encodeproject.org/files/ENCFF242HCM/@@download/ENCFF242HCM.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF337RTD bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF656PTN 4049903 ENCODE Processing Pipeline 34a201468fe2cc830b77ab03cb4dab1e https://www.encodeproject.org/files/ENCFF337RTD/@@download/ENCFF337RTD.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF565OZP bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF232PMQ, ENCFF656PTN 5185896 ENCODE Processing Pipeline fc998cd8fd37762830baf54b29fc2691 https://www.encodeproject.org/files/ENCFF565OZP/@@download/ENCFF565OZP.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF418YIB bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF556HBG 9147555 ENCODE Processing Pipeline 895bf68f6d525c5330ced594d51667c4 https://www.encodeproject.org/files/ENCFF418YIB/@@download/ENCFF418YIB.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF792TFG bigWig fold change over control ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF232PMQ, ENCFF656PTN 359761217 ENCODE Processing Pipeline 94eacbe92c9a8c397305a08c7033967f https://www.encodeproject.org/files/ENCFF792TFG/@@download/ENCFF792TFG.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF782ADN bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF337RTD 10338120 ENCODE Processing Pipeline 84be07d48fdfb690f9138da3621d19b1 https://www.encodeproject.org/files/ENCFF782ADN/@@download/ENCFF782ADN.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF215SDK bigBed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF565OZP 13215479 ENCODE Processing Pipeline 65b154a4d63a3164dc419254f07858fb https://www.encodeproject.org/files/ENCFF215SDK/@@download/ENCFF215SDK.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF250QWW bed narrowPeak conservative idr thresholded peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF337RTD, ENCFF556HBG, ENCFF565OZP 7168 ENCODE Processing Pipeline 273ee6f9d917693d1e67568a730f052d https://www.encodeproject.org/files/ENCFF250QWW/@@download/ENCFF250QWW.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YXP bam alignments ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXT 146164790 Michael Snyder, Stanford afd80adf402822a51208ddcbb0aa8b58 https://www.encodeproject.org/files/ENCFF000YXP/@@download/ENCFF000YXP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXQ bam alignments ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YYA 139904241 Michael Snyder, Stanford 740bf0c412cd173cf72ee5ba4e41e63f https://www.encodeproject.org/files/ENCFF000YXQ/@@download/ENCFF000YXQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXR bigBed narrowPeak peaks ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOL 79638 Michael Snyder, Stanford 586b91a96c24b595e84233291610c391 https://www.encodeproject.org/files/ENCFF000YXR/@@download/ENCFF000YXR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXS bigWig signal ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 291789520 Michael Snyder, Stanford b27a37aba97933f74da7c6f52c8a4535 https://www.encodeproject.org/files/ENCFF000YXS/@@download/ENCFF000YXS.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YXT fastq reads ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 112343434 Michael Snyder, Stanford 965514eb2bdd94b52a53003b5e439bca https://www.encodeproject.org/files/ENCFF000YXT/@@download/ENCFF000YXT.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released biological replicates with identical biosample insufficient read length ENCFF000YYA fastq reads ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 108905251 Michael Snyder, Stanford c49b219aa4a13e0119d5f8b31e0f9906 https://www.encodeproject.org/files/ENCFF000YYA/@@download/ENCFF000YYA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released biological replicates with identical biosample insufficient read length ENCFF001VOL bed narrowPeak peaks ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2127 Michael Snyder, Stanford 9123418a8d342a40a1f9614cbfca0806 https://www.encodeproject.org/files/ENCFF001VOL/@@download/ENCFF001VOL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CXT bed narrowPeak optimal idr thresholded peaks ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 4627 ENCODE Consortium Analysis Working Group bda0160eadd3d7e99ccac755fa0b2e2c https://www.encodeproject.org/files/ENCFF002CXT/@@download/ENCFF002CXT.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF151YVA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXT 86120 ENCODE Consortium bd6f949bcf7f78a5508ec4d30caf41e7 https://www.encodeproject.org/files/ENCFF151YVA/@@download/ENCFF151YVA.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000NTW bam alignments ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NUK 989932051 Richard Myers, HAIB 5b94f937bdcad78638c91cfb72dda6f0 https://www.encodeproject.org/files/ENCFF000NTW/@@download/ENCFF000NTW.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTX bigBed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TWP 403648 Richard Myers, HAIB dae039b41f784c7270184257add0f5e5 https://www.encodeproject.org/files/ENCFF000NTX/@@download/ENCFF000NTX.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTY bigBed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TWQ 271725 Richard Myers, HAIB 6338ddcb0b9acd85e09a69ba4bf3b42c https://www.encodeproject.org/files/ENCFF000NTY/@@download/ENCFF000NTY.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTZ bam alignments ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NUL 1581843009 Richard Myers, HAIB 5bb63ee013eaaee5e1aaecc483f1f629 https://www.encodeproject.org/files/ENCFF000NTZ/@@download/ENCFF000NTZ.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NUA bigWig raw signal ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 95839546 Richard Myers, HAIB 441c30549ae8fde8e294b61d2dce64f6 https://www.encodeproject.org/files/ENCFF000NUA/@@download/ENCFF000NUA.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000NUC bigWig raw signal ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 203102594 Richard Myers, HAIB 83f12e3b4c8a314f4067bbee41b9164a https://www.encodeproject.org/files/ENCFF000NUC/@@download/ENCFF000NUC.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000NUK fastq reads ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1079562478 Richard Myers, HAIB e3b0a6e84c9e0ccf6e52314bc852859d https://www.encodeproject.org/files/ENCFF000NUK/@@download/ENCFF000NUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000ODZ/ released inconsistent platforms biological replicates with identical biosample ENCFF000NUL fastq reads ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1683603412 Richard Myers, HAIB 3aadd26af6ce9319622a511e46436db0 https://www.encodeproject.org/files/ENCFF000NUL/@@download/ENCFF000NUL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OEB/ released inconsistent platforms biological replicates with identical biosample ENCFF001TWP bed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 225840 Richard Myers, HAIB f4f5ac658b449f92150067a7a7729d07 https://www.encodeproject.org/files/ENCFF001TWP/@@download/ENCFF001TWP.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001TWQ bed broadPeak peaks ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 117465 Richard Myers, HAIB be4b7a93fa9c17199e19dcfa2c454d75 https://www.encodeproject.org/files/ENCFF001TWQ/@@download/ENCFF001TWQ.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF254RUK bam unfiltered alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAA, ENCFF807MUK 949044169 ENCODE Processing Pipeline 5e91dadc3f16eca01cf412c854ccb141 https://www.encodeproject.org/files/ENCFF254RUK/@@download/ENCFF254RUK.bam hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF623SZD bam unfiltered alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAC, ENCFF807MUK 1314153897 ENCODE Processing Pipeline 3e7d9f52bb32a9ed0208227e68347f3b https://www.encodeproject.org/files/ENCFF623SZD/@@download/ENCFF623SZD.bam hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF002EAA fastq reads ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 760341403 Michael Snyder, Stanford 6a3a0e1de99f97de7d5830b9a330059e SRA:SRR6213140 https://www.encodeproject.org/files/ENCFF002EAA/@@download/ENCFF002EAA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF002EAC fastq reads ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1066167684 Michael Snyder, Stanford 10fd42b5de639b214f04279f39fc1e09 SRA:SRR6213139 https://www.encodeproject.org/files/ENCFF002EAC/@@download/ENCFF002EAC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF254PCL bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF002EAA, ENCFF807MUK 662297943 ENCODE Processing Pipeline 90bbec3075493d154aa88a071fdb8256 https://www.encodeproject.org/files/ENCFF254PCL/@@download/ENCFF254PCL.bam hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF215VRH bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF002EAC, ENCFF807MUK 889519511 ENCODE Processing Pipeline 51f30dff509608950c33385f6fc7b07e https://www.encodeproject.org/files/ENCFF215VRH/@@download/ENCFF215VRH.bam hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF135NFD bigWig signal p-value ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF215VRH, ENCFF254PCL, ENCFF425JYG, ENCFF863STQ 1024336234 ENCODE Processing Pipeline 7f04b86241cd8e48ede3080ee0044171 https://www.encodeproject.org/files/ENCFF135NFD/@@download/ENCFF135NFD.bigWig hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF025TAU bigWig signal p-value ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF215VRH, ENCFF863STQ 663332256 ENCODE Processing Pipeline 97974561191130f1eb0956ab214d1919 https://www.encodeproject.org/files/ENCFF025TAU/@@download/ENCFF025TAU.bigWig hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF522NYN bigWig fold change over control ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF215VRH, ENCFF863STQ 510714256 ENCODE Processing Pipeline 18953eff87f2aa6156ac35672733737c https://www.encodeproject.org/files/ENCFF522NYN/@@download/ENCFF522NYN.bigWig hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF215PIR bigBed narrowPeak conservative idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF852HHF 71059 ENCODE Processing Pipeline 01fe7436705cc703b5376e4a200cb918 https://www.encodeproject.org/files/ENCFF215PIR/@@download/ENCFF215PIR.bigBed hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF319HLW bed narrowPeak optimal idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF105LXO, ENCFF348XCJ, ENCFF821INE 14457 ENCODE Processing Pipeline 13a3b524ef8f07cfa68348b0e7880fa3 https://www.encodeproject.org/files/ENCFF319HLW/@@download/ENCFF319HLW.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF090QHK bigWig fold change over control ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF254PCL, ENCFF425JYG 367877490 ENCODE Processing Pipeline 11fcebd0f0d12c641e13925b6e16a888 https://www.encodeproject.org/files/ENCFF090QHK/@@download/ENCFF090QHK.bigWig hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF876ZGU bigWig signal p-value ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF254PCL, ENCFF425JYG 479185075 ENCODE Processing Pipeline 041897b530da20ac7d2a41c88c21c344 https://www.encodeproject.org/files/ENCFF876ZGU/@@download/ENCFF876ZGU.bigWig hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF115CXU bigWig fold change over control ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF215VRH, ENCFF254PCL, ENCFF425JYG, ENCFF863STQ 975769322 ENCODE Processing Pipeline be6ea4c9a86f89a0d14900c679d8b9b3 https://www.encodeproject.org/files/ENCFF115CXU/@@download/ENCFF115CXU.bigWig hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF821INE bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF215VRH, ENCFF863STQ 4382596 ENCODE Processing Pipeline 56971f40c755782b168da0a901ae5951 https://www.encodeproject.org/files/ENCFF821INE/@@download/ENCFF821INE.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF552ALG bigBed narrowPeak optimal idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF319HLW 75985 ENCODE Processing Pipeline 632a5dea356e3b50c8186ee480562f25 https://www.encodeproject.org/files/ENCFF552ALG/@@download/ENCFF552ALG.bigBed hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF348XCJ bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF254PCL, ENCFF425JYG 4374404 ENCODE Processing Pipeline 028dfc7d3c179772454c32926f7257ea https://www.encodeproject.org/files/ENCFF348XCJ/@@download/ENCFF348XCJ.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF105LXO bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF215VRH, ENCFF254PCL, ENCFF425JYG, ENCFF863STQ 5908129 ENCODE Processing Pipeline b5b589a306ef9f318c4b367323aca411 https://www.encodeproject.org/files/ENCFF105LXO/@@download/ENCFF105LXO.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF542DUO bigBed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF821INE 11000103 ENCODE Processing Pipeline 227b9f96c563a8c0526b356c438ac924 https://www.encodeproject.org/files/ENCFF542DUO/@@download/ENCFF542DUO.bigBed hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF258MAK bigBed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF348XCJ 10866626 ENCODE Processing Pipeline a00276dc0bdd4ea28664cae36cb954be https://www.encodeproject.org/files/ENCFF258MAK/@@download/ENCFF258MAK.bigBed hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF798OMY bigBed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF105LXO 11398313 ENCODE Processing Pipeline 09bead157e81b441432d5510b8672ae1 https://www.encodeproject.org/files/ENCFF798OMY/@@download/ENCFF798OMY.bigBed hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF852HHF bed narrowPeak conservative idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF105LXO, ENCFF348XCJ, ENCFF821INE 11678 ENCODE Processing Pipeline 6d5e49f26735f00f5ebefec015a792a3 https://www.encodeproject.org/files/ENCFF852HHF/@@download/ENCFF852HHF.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF127UAE bam unfiltered alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAC, ENCFF643CGH 1320060404 ENCODE Processing Pipeline 8bfcb623d7b8734da82618368d77c142 https://www.encodeproject.org/files/ENCFF127UAE/@@download/ENCFF127UAE.bam GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF809JRB bam unfiltered alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAA, ENCFF643CGH 953196004 ENCODE Processing Pipeline 93ec4a9fceda4d8f7d164db3ea5172be https://www.encodeproject.org/files/ENCFF809JRB/@@download/ENCFF809JRB.bam GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF758YDA bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAC, ENCFF643CGH 889422948 ENCODE Processing Pipeline c8ab39f174e5665bdb0d5646c55f5d36 https://www.encodeproject.org/files/ENCFF758YDA/@@download/ENCFF758YDA.bam GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF193KZT bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAA, ENCFF643CGH 662179320 ENCODE Processing Pipeline 630def2976dfd725d82b95c3d8d68afc https://www.encodeproject.org/files/ENCFF193KZT/@@download/ENCFF193KZT.bam GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF539JNB bigWig signal p-value ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF758YDA, ENCFF918AJW 515223539 ENCODE Processing Pipeline 8ffc5632c28ce400a477972d57f0f13f https://www.encodeproject.org/files/ENCFF539JNB/@@download/ENCFF539JNB.bigWig GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF993GBH bigWig signal p-value ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF193KZT, ENCFF758YDA, ENCFF918AJW, ENCFF949XNJ 962044654 ENCODE Processing Pipeline a91d50311e84d70e64d27b38725cdb70 https://www.encodeproject.org/files/ENCFF993GBH/@@download/ENCFF993GBH.bigWig GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF478JIV bigWig signal p-value ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF193KZT, ENCFF949XNJ 479801068 ENCODE Processing Pipeline d3936d2cfc1f871b0d891b66e649c15c https://www.encodeproject.org/files/ENCFF478JIV/@@download/ENCFF478JIV.bigWig GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF798RET bigWig fold change over control ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF758YDA, ENCFF918AJW 519371088 ENCODE Processing Pipeline ba199bb2eb03c902823c9b6dc4624f2d https://www.encodeproject.org/files/ENCFF798RET/@@download/ENCFF798RET.bigWig GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF295ZMB bigWig fold change over control ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF193KZT, ENCFF949XNJ 366451847 ENCODE Processing Pipeline 5bce2c48b57c94479c6f3744113b249a https://www.encodeproject.org/files/ENCFF295ZMB/@@download/ENCFF295ZMB.bigWig GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF374NIY bigWig fold change over control ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF193KZT, ENCFF758YDA, ENCFF918AJW, ENCFF949XNJ 1043864787 ENCODE Processing Pipeline 31ccd8c6d2a0b51210a0f67acf405cbc https://www.encodeproject.org/files/ENCFF374NIY/@@download/ENCFF374NIY.bigWig GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF631LWY bigBed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF707ZBK 11397310 ENCODE Processing Pipeline 16741f819776cbc6443a3870131d21e1 https://www.encodeproject.org/files/ENCFF631LWY/@@download/ENCFF631LWY.bigBed GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF505FJH bed narrowPeak conservative idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF707ZBK, ENCFF762TXQ, ENCFF930GCL 12437 ENCODE Processing Pipeline 4a7de313918547553dcf11b270a8addd https://www.encodeproject.org/files/ENCFF505FJH/@@download/ENCFF505FJH.bed.gz GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF762TXQ bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF758YDA, ENCFF918AJW 4215688 ENCODE Processing Pipeline f46e5492a331f1a4ea60f2869876f9cf https://www.encodeproject.org/files/ENCFF762TXQ/@@download/ENCFF762TXQ.bed.gz GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF707ZBK bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF193KZT, ENCFF758YDA, ENCFF918AJW, ENCFF949XNJ 5652437 ENCODE Processing Pipeline ac613ed5280bcc7e15321a9b9195e807 https://www.encodeproject.org/files/ENCFF707ZBK/@@download/ENCFF707ZBK.bed.gz GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF888BZU bigBed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF930GCL 10647586 ENCODE Processing Pipeline 023f49bbed8a3bf94eec03791b2c4ad3 https://www.encodeproject.org/files/ENCFF888BZU/@@download/ENCFF888BZU.bigBed GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF477JSK bigBed narrowPeak conservative idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF505FJH 72461 ENCODE Processing Pipeline 5119eddefda0ebdbc41acd044aa2bbf1 https://www.encodeproject.org/files/ENCFF477JSK/@@download/ENCFF477JSK.bigBed GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF930GCL bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF193KZT, ENCFF949XNJ 4146827 ENCODE Processing Pipeline bc7ed713ff8a5fbd61a0166c8de97473 https://www.encodeproject.org/files/ENCFF930GCL/@@download/ENCFF930GCL.bed.gz GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF151DUR bigBed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF762TXQ 10759734 ENCODE Processing Pipeline 72c574683bbccbd9e8de743af4e04c2b https://www.encodeproject.org/files/ENCFF151DUR/@@download/ENCFF151DUR.bigBed GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF300SNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF993WZP 79264 ENCODE Processing Pipeline 3a13513b44e6854473a948858c857aea https://www.encodeproject.org/files/ENCFF300SNQ/@@download/ENCFF300SNQ.bigBed GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF993WZP bed narrowPeak optimal idr thresholded peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF707ZBK, ENCFF762TXQ, ENCFF930GCL 16623 ENCODE Processing Pipeline c5e4a25211a587345b8703b7c7664a51 https://www.encodeproject.org/files/ENCFF993WZP/@@download/ENCFF993WZP.bed.gz GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF121GUI bam unfiltered alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 50 ENCFF444RSD, ENCFF807MUK 951182110 ENCODE Processing Pipeline 90238b5423757f26781431dbaa749d9d https://www.encodeproject.org/files/ENCFF121GUI/@@download/ENCFF121GUI.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF140OOC bam unfiltered alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 50 ENCFF240REY, ENCFF807MUK 1565287878 ENCODE Processing Pipeline 3d44c8b3dcfb01828fa0e311d183859b https://www.encodeproject.org/files/ENCFF140OOC/@@download/ENCFF140OOC.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF240REY fastq reads ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 1 50 single-ended 1392864712 Richard Myers, HAIB c94d48b4bad3aa0a64bb3587e52e847a SRA:SRR5339110 https://www.encodeproject.org/files/ENCFF240REY/@@download/ENCFF240REY.fastq.gz Illumina HiSeq 2000 /files/ENCFF147CMT/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF444RSD fastq reads ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 1 50 single-ended 836254233 Richard Myers, HAIB 5537d47325c1e0b6ec89c1b70bf601ce SRA:SRR5339111 https://www.encodeproject.org/files/ENCFF444RSD/@@download/ENCFF444RSD.fastq.gz Illumina HiSeq 2000 /files/ENCFF147CMT/ released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF756TTX bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF444RSD, ENCFF807MUK 741640215 ENCODE Processing Pipeline 4a8878fff1ac7c9d83a70230b2467ec2 https://www.encodeproject.org/files/ENCFF756TTX/@@download/ENCFF756TTX.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF833MPT bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF240REY, ENCFF807MUK 1201925025 ENCODE Processing Pipeline 769d4f76d51e3688bc3cbd3632b67a9c https://www.encodeproject.org/files/ENCFF833MPT/@@download/ENCFF833MPT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF117BJC bigWig signal p-value ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF708TFQ, ENCFF833MPT 473296544 ENCODE Processing Pipeline 2b0d3ffc489ed80b7c59dc3d2df83319 https://www.encodeproject.org/files/ENCFF117BJC/@@download/ENCFF117BJC.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF771ZWY bigWig signal p-value ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF708TFQ, ENCFF756TTX 431156365 ENCODE Processing Pipeline ff45ed9bb4529bb20256368cf82d98da https://www.encodeproject.org/files/ENCFF771ZWY/@@download/ENCFF771ZWY.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF302EJQ bigWig signal p-value ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF708TFQ, ENCFF756TTX, ENCFF833MPT 481125910 ENCODE Processing Pipeline d61a29249859b63755d708f4b2ed201d https://www.encodeproject.org/files/ENCFF302EJQ/@@download/ENCFF302EJQ.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF316NRF bigWig fold change over control ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF708TFQ, ENCFF833MPT 551120396 ENCODE Processing Pipeline e2d99f9a717d00d20a2c5dc22d352009 https://www.encodeproject.org/files/ENCFF316NRF/@@download/ENCFF316NRF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF928MMD bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF708TFQ, ENCFF833MPT 6030812 ENCODE Processing Pipeline 76f9f0a75422f46e2b6b0e4d7bf2f7f8 https://www.encodeproject.org/files/ENCFF928MMD/@@download/ENCFF928MMD.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF661GPF bigWig fold change over control ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF708TFQ, ENCFF756TTX, ENCFF833MPT 794821678 ENCODE Processing Pipeline 7b28a59bbab0af1c37c8b542e37d0e90 https://www.encodeproject.org/files/ENCFF661GPF/@@download/ENCFF661GPF.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF299ENM bed narrowPeak optimal idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF199FFU, ENCFF421NCI, ENCFF928MMD 108732 ENCODE Processing Pipeline 8a728f81094a659b30119c850638b1a0 https://www.encodeproject.org/files/ENCFF299ENM/@@download/ENCFF299ENM.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF281KPR bigWig fold change over control ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF708TFQ, ENCFF756TTX 377396734 ENCODE Processing Pipeline 4657cbbdd5013f5587f74001fb70fc88 https://www.encodeproject.org/files/ENCFF281KPR/@@download/ENCFF281KPR.bigWig hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF182VFL bed narrowPeak conservative idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF199FFU, ENCFF421NCI, ENCFF928MMD 94798 ENCODE Processing Pipeline 6e53c21f55de94be30446ecfc5bb20db https://www.encodeproject.org/files/ENCFF182VFL/@@download/ENCFF182VFL.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF199FFU bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF708TFQ, ENCFF756TTX 5036581 ENCODE Processing Pipeline 9497167b31a81466464cc0458197e940 https://www.encodeproject.org/files/ENCFF199FFU/@@download/ENCFF199FFU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF479RGT bigBed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF928MMD 13181358 ENCODE Processing Pipeline ef03b136dbf6fc4e63d4711820881dc4 https://www.encodeproject.org/files/ENCFF479RGT/@@download/ENCFF479RGT.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF421NCI bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF708TFQ, ENCFF756TTX, ENCFF833MPT 6177113 ENCODE Processing Pipeline ec2715240bae69e4afec737aff9b8847 https://www.encodeproject.org/files/ENCFF421NCI/@@download/ENCFF421NCI.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF554JSB bigBed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF199FFU 11071888 ENCODE Processing Pipeline b5e146f172dad3be71fe7e1eecc74f0f https://www.encodeproject.org/files/ENCFF554JSB/@@download/ENCFF554JSB.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF003AXW bigBed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF421NCI 13183409 ENCODE Processing Pipeline 1c94212d9b4d8a68f6c190a8e71b7967 https://www.encodeproject.org/files/ENCFF003AXW/@@download/ENCFF003AXW.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF642SBL bigBed narrowPeak conservative idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF182VFL 236890 ENCODE Processing Pipeline 69247fe87a53a0542c2939e1f29b19f5 https://www.encodeproject.org/files/ENCFF642SBL/@@download/ENCFF642SBL.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF067YGQ bigBed narrowPeak optimal idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF299ENM 259683 ENCODE Processing Pipeline 0a956013b270919fb2c5fd299b6b2129 https://www.encodeproject.org/files/ENCFF067YGQ/@@download/ENCFF067YGQ.bigBed hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF673UNF bam unfiltered alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 50 ENCFF444RSD, ENCFF643CGH 954761726 ENCODE Processing Pipeline e84987096f9ee3a87d1f4cd8e9e31db9 https://www.encodeproject.org/files/ENCFF673UNF/@@download/ENCFF673UNF.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF370JWF bam unfiltered alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 50 ENCFF240REY, ENCFF643CGH 1571435103 ENCODE Processing Pipeline 3ea48d2ecb11949a64dcf8e014ca50ae https://www.encodeproject.org/files/ENCFF370JWF/@@download/ENCFF370JWF.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF836TAY bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 50 ENCFF444RSD, ENCFF643CGH 741496829 ENCODE Processing Pipeline 09cf077c26302719cc4c0623c0aa843c https://www.encodeproject.org/files/ENCFF836TAY/@@download/ENCFF836TAY.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF897TJD bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 50 ENCFF240REY, ENCFF643CGH 1201800617 ENCODE Processing Pipeline a49cae8c843aba9c6f0ff8bd0e01f614 https://www.encodeproject.org/files/ENCFF897TJD/@@download/ENCFF897TJD.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF072TWX bigWig signal p-value ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF619EAZ, ENCFF897TJD 469648975 ENCODE Processing Pipeline 9481c29a03f8ebb6263c8e4420fcf610 https://www.encodeproject.org/files/ENCFF072TWX/@@download/ENCFF072TWX.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF169QMI bigWig signal p-value ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF619EAZ, ENCFF836TAY, ENCFF897TJD 485958642 ENCODE Processing Pipeline f0ff4cb7b7a59959b3f77a7cc4bf8abd https://www.encodeproject.org/files/ENCFF169QMI/@@download/ENCFF169QMI.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF259AAH bigWig signal p-value ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF619EAZ, ENCFF836TAY 369507178 ENCODE Processing Pipeline a6d82d8b5c1a0a0b023d5dbcefd4a931 https://www.encodeproject.org/files/ENCFF259AAH/@@download/ENCFF259AAH.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF778FTU bigWig fold change over control ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF619EAZ, ENCFF836TAY 362366455 ENCODE Processing Pipeline cbf40d9d78b80c27de2897ba8baf6138 https://www.encodeproject.org/files/ENCFF778FTU/@@download/ENCFF778FTU.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF362RYE bigWig fold change over control ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF619EAZ, ENCFF897TJD 550437185 ENCODE Processing Pipeline 08693924e77a0bde8f4203dd3437784c https://www.encodeproject.org/files/ENCFF362RYE/@@download/ENCFF362RYE.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF864ZRY bigWig fold change over control ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF619EAZ, ENCFF836TAY, ENCFF897TJD 803105719 ENCODE Processing Pipeline 24bc7928f6694071704b406cbf26ef00 https://www.encodeproject.org/files/ENCFF864ZRY/@@download/ENCFF864ZRY.bigWig GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF104DSB bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF619EAZ, ENCFF897TJD 5810975 ENCODE Processing Pipeline 13dd44ec745b028dbe79e5987187ec0e https://www.encodeproject.org/files/ENCFF104DSB/@@download/ENCFF104DSB.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF789HKA bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF619EAZ, ENCFF836TAY 4783991 ENCODE Processing Pipeline 2f5396a1739edf72c8b47e8a1d932872 https://www.encodeproject.org/files/ENCFF789HKA/@@download/ENCFF789HKA.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF966LBP bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF619EAZ, ENCFF836TAY, ENCFF897TJD 5967318 ENCODE Processing Pipeline bb2c877817bfe5ed436c72bc6d208090 https://www.encodeproject.org/files/ENCFF966LBP/@@download/ENCFF966LBP.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF064NUG bigBed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF966LBP 13176950 ENCODE Processing Pipeline aa5fb9b98af287fcbcaa200b16975d32 https://www.encodeproject.org/files/ENCFF064NUG/@@download/ENCFF064NUG.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF946XDG bed narrowPeak conservative idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF104DSB, ENCFF419RSJ, ENCFF789HKA, ENCFF966LBP 94133 ENCODE Processing Pipeline 9264e3bb0498b60267f3789a734e2340 https://www.encodeproject.org/files/ENCFF946XDG/@@download/ENCFF946XDG.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF846UVI bigBed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF104DSB 13144085 ENCODE Processing Pipeline 2f83a05476b116d5c06c8dcd0e6f8e2d https://www.encodeproject.org/files/ENCFF846UVI/@@download/ENCFF846UVI.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF731MLM bigBed narrowPeak conservative idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF946XDG 236094 ENCODE Processing Pipeline bd9cbf71b10822765728d226f5216643 https://www.encodeproject.org/files/ENCFF731MLM/@@download/ENCFF731MLM.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF631UVP bed narrowPeak optimal idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF104DSB, ENCFF419RSJ, ENCFF789HKA, ENCFF966LBP 109797 ENCODE Processing Pipeline f48a69bf1cd387f7c491b6b9dd668ac9 https://www.encodeproject.org/files/ENCFF631UVP/@@download/ENCFF631UVP.bed.gz GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF421OMZ bigBed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF789HKA 10854847 ENCODE Processing Pipeline d4b6dbd600b844764063302f1b018659 https://www.encodeproject.org/files/ENCFF421OMZ/@@download/ENCFF421OMZ.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF919QJN bigBed narrowPeak optimal idr thresholded peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF631UVP 262862 ENCODE Processing Pipeline fc9c767e947fdaf8ccae4063f3a7d5f6 https://www.encodeproject.org/files/ENCFF919QJN/@@download/ENCFF919QJN.bigBed GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF452XLY fastq reads ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 1 76 single-ended 1436021988 Richard Myers, HAIB dbac3db4472f2adb8fcae0730d5752ea https://www.encodeproject.org/files/ENCFF452XLY/@@download/ENCFF452XLY.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF687TUC bam unfiltered alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 76 ENCFF452XLY, ENCFF643CGH 1560498227 ENCODE Processing Pipeline 44f3095f6c25903c598fd2e603c0bd8d https://www.encodeproject.org/files/ENCFF687TUC/@@download/ENCFF687TUC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF015EQF bam unfiltered alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 76 ENCFF452XLY, ENCFF807MUK 1555512480 ENCODE Processing Pipeline 964e48ba7e991098baf4af43b3530bfa https://www.encodeproject.org/files/ENCFF015EQF/@@download/ENCFF015EQF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF554XNF bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 76 ENCFF452XLY, ENCFF643CGH 1190758005 ENCODE Processing Pipeline 1ba6864152989c5dda974d6bcc659c61 https://www.encodeproject.org/files/ENCFF554XNF/@@download/ENCFF554XNF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF675GHT bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 76 ENCFF452XLY, ENCFF807MUK 1189620140 ENCODE Processing Pipeline aab33ccfa5d672dbb91fbcb1d3536e64 https://www.encodeproject.org/files/ENCFF675GHT/@@download/ENCFF675GHT.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF734HBO fastq reads ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 1 76 single-ended 1694064872 Richard Myers, HAIB d842102608f551ca45011b643fc816a5 https://www.encodeproject.org/files/ENCFF734HBO/@@download/ENCFF734HBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF539UGL bam unfiltered alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF734HBO 1995325863 ENCODE Processing Pipeline 9662f506952473ec1a1da4722052b0c4 https://www.encodeproject.org/files/ENCFF539UGL/@@download/ENCFF539UGL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF042KDC bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF734HBO 1471358215 ENCODE Processing Pipeline f5c601c3b1c8c69b86d68b87134844fb https://www.encodeproject.org/files/ENCFF042KDC/@@download/ENCFF042KDC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF672KKI bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 76 ENCFF734HBO, ENCFF807MUK 1469979929 ENCODE Processing Pipeline 83234c1da673928dec8c97ed079cd2d6 https://www.encodeproject.org/files/ENCFF672KKI/@@download/ENCFF672KKI.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF766NBI bam unfiltered alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 76 ENCFF734HBO, ENCFF807MUK 1989531921 ENCODE Processing Pipeline a664433ec8263faa243f1331e659ad55 https://www.encodeproject.org/files/ENCFF766NBI/@@download/ENCFF766NBI.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF698YOJ bigWig signal p-value ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF675GHT 584155073 ENCODE Processing Pipeline 85550200bbaee737a2f80abcf7b33970 https://www.encodeproject.org/files/ENCFF698YOJ/@@download/ENCFF698YOJ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF438KFO bigWig fold change over control ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF675GHT 474260746 ENCODE Processing Pipeline 82d4ae1391d21de2dc626db88ecfe22d https://www.encodeproject.org/files/ENCFF438KFO/@@download/ENCFF438KFO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF921ZLA bigWig signal p-value ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF672KKI 561509779 ENCODE Processing Pipeline 7d9348ca60b5e0104c836cc2bf742274 https://www.encodeproject.org/files/ENCFF921ZLA/@@download/ENCFF921ZLA.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF533EPW bigWig fold change over control ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF042KDC 580881954 ENCODE Processing Pipeline 39cba0450fdb0facc00950cb07bf7979 https://www.encodeproject.org/files/ENCFF533EPW/@@download/ENCFF533EPW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF982UMM bigWig signal p-value ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF042KDC 511060380 ENCODE Processing Pipeline 32f7dadf3db98254805904cf6c0b0699 https://www.encodeproject.org/files/ENCFF982UMM/@@download/ENCFF982UMM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF141KLI bigWig signal p-value ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF042KDC, ENCFF554XNF 657648430 ENCODE Processing Pipeline 02e5ca4404224e5affaf0b68db637229 https://www.encodeproject.org/files/ENCFF141KLI/@@download/ENCFF141KLI.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF875ZBQ bigWig signal p-value ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF554XNF 521584163 ENCODE Processing Pipeline 6271c22deef15a255040bdb45170b7e9 https://www.encodeproject.org/files/ENCFF875ZBQ/@@download/ENCFF875ZBQ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF008TUY bigWig fold change over control ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF554XNF 474441433 ENCODE Processing Pipeline 01f76293b4d060646d3342ec51146279 https://www.encodeproject.org/files/ENCFF008TUY/@@download/ENCFF008TUY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF623KAF bigWig signal p-value ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF672KKI, ENCFF675GHT 659843749 ENCODE Processing Pipeline f34d60f174ca770d2484b856a51df2e7 https://www.encodeproject.org/files/ENCFF623KAF/@@download/ENCFF623KAF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF154KPN bigWig fold change over control ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF672KKI 574775860 ENCODE Processing Pipeline c80d36b268bc90c830300db56e00d46d https://www.encodeproject.org/files/ENCFF154KPN/@@download/ENCFF154KPN.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF553JOV bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF554XNF 4959042 ENCODE Processing Pipeline 00487ec42fbfb2e8c6bb408f5e7e12e9 https://www.encodeproject.org/files/ENCFF553JOV/@@download/ENCFF553JOV.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF092ASH bigBed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF910TCZ 8099534 ENCODE Processing Pipeline 86acc9f7edef96ae0fc6307214590c3d https://www.encodeproject.org/files/ENCFF092ASH/@@download/ENCFF092ASH.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF277LHR bed narrowPeak conservative idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF366BIH, ENCFF419RSJ, ENCFF553JOV, ENCFF910TCZ 412535 ENCODE Processing Pipeline 19ba166b910921d2d0f90c62a2277d94 https://www.encodeproject.org/files/ENCFF277LHR/@@download/ENCFF277LHR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF375LJC bigWig fold change over control ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF042KDC, ENCFF554XNF 877585083 ENCODE Processing Pipeline d220fdbecff974584bc671a2eef64c33 https://www.encodeproject.org/files/ENCFF375LJC/@@download/ENCFF375LJC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF013EXP bigBed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF366BIH 13289408 ENCODE Processing Pipeline e9ddbb627bd493cbe59a48f47673a63d https://www.encodeproject.org/files/ENCFF013EXP/@@download/ENCFF013EXP.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF978MGG bigBed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF553JOV 11054970 ENCODE Processing Pipeline f74a56e41ed8730159ee2430d4936d4a https://www.encodeproject.org/files/ENCFF978MGG/@@download/ENCFF978MGG.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF572GPR bigWig fold change over control ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF672KKI, ENCFF675GHT 880585144 ENCODE Processing Pipeline 17f1434ac99f48e2267d18da5c0c4576 https://www.encodeproject.org/files/ENCFF572GPR/@@download/ENCFF572GPR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF910TCZ bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF042KDC, ENCFF554XNF 3811026 ENCODE Processing Pipeline e294f28ee49966d81fb8d341f09b2e71 https://www.encodeproject.org/files/ENCFF910TCZ/@@download/ENCFF910TCZ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF366BIH bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF042KDC 5655113 ENCODE Processing Pipeline 103dddc6d4fea68510830e7bb3df32ad https://www.encodeproject.org/files/ENCFF366BIH/@@download/ENCFF366BIH.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF660FMW bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF672KKI 5735076 ENCODE Processing Pipeline c897344b93a3457b06e62854ea50d490 https://www.encodeproject.org/files/ENCFF660FMW/@@download/ENCFF660FMW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF421WNZ bigBed narrowPeak conservative idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF277LHR 724519 ENCODE Processing Pipeline b1683789fba43ed6fde8c6d41082a3b2 https://www.encodeproject.org/files/ENCFF421WNZ/@@download/ENCFF421WNZ.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF271GOA bigBed narrowPeak optimal idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF460UOW 994945 ENCODE Processing Pipeline a6d0de105d8e54133a1f48822a9aad70 https://www.encodeproject.org/files/ENCFF271GOA/@@download/ENCFF271GOA.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF008BOV bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF675GHT 4971126 ENCODE Processing Pipeline 2b665958288d9c20d8296589d3c51c47 https://www.encodeproject.org/files/ENCFF008BOV/@@download/ENCFF008BOV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF460UOW bed narrowPeak optimal idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF366BIH, ENCFF419RSJ, ENCFF553JOV, ENCFF910TCZ 477989 ENCODE Processing Pipeline d7f5ff831000f8f4813dd2b561edd338 https://www.encodeproject.org/files/ENCFF460UOW/@@download/ENCFF460UOW.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF159DSQ bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF672KKI, ENCFF675GHT 3819405 ENCODE Processing Pipeline fef00d2702c71b50592e7d211940a564 https://www.encodeproject.org/files/ENCFF159DSQ/@@download/ENCFF159DSQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF756UOU bigBed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF660FMW 13308528 ENCODE Processing Pipeline c431a7e95bd9c71ce9bedc1ebeaa7ae8 https://www.encodeproject.org/files/ENCFF756UOU/@@download/ENCFF756UOU.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF521NWC bigBed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF159DSQ 8112094 ENCODE Processing Pipeline ac360a9e56cd3013301dd6fdd7500d31 https://www.encodeproject.org/files/ENCFF521NWC/@@download/ENCFF521NWC.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF006ZQH bigBed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF008BOV 11058627 ENCODE Processing Pipeline adef68306a6bdd6485cde5adf5f5077c https://www.encodeproject.org/files/ENCFF006ZQH/@@download/ENCFF006ZQH.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF693ZGN bed narrowPeak optimal idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF008BOV, ENCFF159DSQ, ENCFF660FMW 463802 ENCODE Processing Pipeline e0d02beb59896aa64b1a1d4afe6698b0 https://www.encodeproject.org/files/ENCFF693ZGN/@@download/ENCFF693ZGN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF916PGC bigBed narrowPeak conservative idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF888ZAZ 716334 ENCODE Processing Pipeline c4646bf37e6e5fba09b7aad49cf6332f https://www.encodeproject.org/files/ENCFF916PGC/@@download/ENCFF916PGC.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF774UIR bigBed narrowPeak optimal idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF693ZGN 790750 ENCODE Processing Pipeline afd12b15e9708efc0030e3896c7f55ba https://www.encodeproject.org/files/ENCFF774UIR/@@download/ENCFF774UIR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF888ZAZ bed narrowPeak conservative idr thresholded peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF008BOV, ENCFF159DSQ, ENCFF660FMW 408062 ENCODE Processing Pipeline e9c4d43beb84c1739ae44101ab64f040 https://www.encodeproject.org/files/ENCFF888ZAZ/@@download/ENCFF888ZAZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF000PXL bigBed broadPeak peaks ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UJI 261217 Richard Myers, HAIB 7e6c97f766805e8cdd8b66d44a95be09 https://www.encodeproject.org/files/ENCFF000PXL/@@download/ENCFF000PXL.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PXM bigBed broadPeak peaks ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UJJ 222448 Richard Myers, HAIB 0366f311ce5b830cefa7ed0c3b6c53a1 https://www.encodeproject.org/files/ENCFF000PXM/@@download/ENCFF000PXM.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PXN bam alignments ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PXY 1491813857 Richard Myers, HAIB 26009d0c8d224772fd045f6aa974da63 https://www.encodeproject.org/files/ENCFF000PXN/@@download/ENCFF000PXN.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PXO bam alignments ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PYC 2113540264 Richard Myers, HAIB a48153d9353437785570616f55bf6fa6 https://www.encodeproject.org/files/ENCFF000PXO/@@download/ENCFF000PXO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PXP bigWig raw signal ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 242636654 Richard Myers, HAIB ba19a79ec7daccd167d35a2fd6734875 https://www.encodeproject.org/files/ENCFF000PXP/@@download/ENCFF000PXP.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PXQ bigWig raw signal ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 294479058 Richard Myers, HAIB 766008b940066ce2da28b13bf1667f78 https://www.encodeproject.org/files/ENCFF000PXQ/@@download/ENCFF000PXQ.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PXY fastq reads ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1563450354 Richard Myers, HAIB d19d5fb2f04463d674da08e4bfff9e39 https://www.encodeproject.org/files/ENCFF000PXY/@@download/ENCFF000PXY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QFK/ released inconsistent platforms biological replicates with identical biosample ENCFF000PYC fastq reads ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2224625230 Richard Myers, HAIB 9822fa781bc9d890dd6e77b1d05fafb6 https://www.encodeproject.org/files/ENCFF000PYC/@@download/ENCFF000PYC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QFK/ released inconsistent platforms biological replicates with identical biosample ENCFF001UJI bed broadPeak peaks ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 114887 Richard Myers, HAIB e6bdf4296b24f043e3551037f7218c64 https://www.encodeproject.org/files/ENCFF001UJI/@@download/ENCFF001UJI.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001UJJ bed broadPeak peaks ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 91869 Richard Myers, HAIB 53b3fcfde7c54c7df5b41bac49ef48a2 https://www.encodeproject.org/files/ENCFF001UJJ/@@download/ENCFF001UJJ.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF300QMB fastq reads ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1312098322 Richard Myers, HAIB 27f214dfdc4afb5663152aec44cc80b8 SRA:SRR5331229 https://www.encodeproject.org/files/ENCFF300QMB/@@download/ENCFF300QMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF842KVM fastq reads ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1467434478 Richard Myers, HAIB 348a3628aa79bc2525058314d6459f40 SRA:SRR5331228 https://www.encodeproject.org/files/ENCFF842KVM/@@download/ENCFF842KVM.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF134LGG bam unfiltered alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF300QMB, ENCFF807MUK 1428826956 ENCODE Processing Pipeline 26689d61ff2146636d9fd345b5e394f0 https://www.encodeproject.org/files/ENCFF134LGG/@@download/ENCFF134LGG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF265GNF bam unfiltered alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF300QMB, ENCFF643CGH 1432023029 ENCODE Processing Pipeline 76fd90e09c16eac219da00507a6b47e6 https://www.encodeproject.org/files/ENCFF265GNF/@@download/ENCFF265GNF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF909FDN bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF300QMB, ENCFF807MUK 1096876481 ENCODE Processing Pipeline 3a8665bde532d484c8250e189e5b52b8 https://www.encodeproject.org/files/ENCFF909FDN/@@download/ENCFF909FDN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF650PCW bam unfiltered alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF842KVM 1574145589 ENCODE Processing Pipeline 3a5aef1a721092d073e2793dc7b9af11 https://www.encodeproject.org/files/ENCFF650PCW/@@download/ENCFF650PCW.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF930GGN bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF842KVM 1142998416 ENCODE Processing Pipeline 99ce6112c5d25775cb4a6ef5a07867c2 https://www.encodeproject.org/files/ENCFF930GGN/@@download/ENCFF930GGN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF858XHV bam unfiltered alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF842KVM 1578820822 ENCODE Processing Pipeline c8772318586da8c05b082a7c3a54328b https://www.encodeproject.org/files/ENCFF858XHV/@@download/ENCFF858XHV.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF509PAA bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF842KVM 1142053179 ENCODE Processing Pipeline 1912f94452f31ff2f6de03c2d8dd6b43 https://www.encodeproject.org/files/ENCFF509PAA/@@download/ENCFF509PAA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF189RMF bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF300QMB, ENCFF643CGH 1097530402 ENCODE Processing Pipeline 35cda8dcd780f4f1ba25cf2293008757 https://www.encodeproject.org/files/ENCFF189RMF/@@download/ENCFF189RMF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF433FTV bigWig signal p-value ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF930GGN 458684717 ENCODE Processing Pipeline 642f221aa3d28e1cc506a797c3094f2f https://www.encodeproject.org/files/ENCFF433FTV/@@download/ENCFF433FTV.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF755VOE bigWig signal p-value ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF189RMF 513482073 ENCODE Processing Pipeline 87a5956c874360ebbbba3d269814c404 https://www.encodeproject.org/files/ENCFF755VOE/@@download/ENCFF755VOE.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF721KWN bigWig signal p-value ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF189RMF, ENCFF930GGN 647852637 ENCODE Processing Pipeline d172c62ce19fa675ea2a87ad37be9faa https://www.encodeproject.org/files/ENCFF721KWN/@@download/ENCFF721KWN.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF670LBC bigWig fold change over control ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF930GGN 438600527 ENCODE Processing Pipeline 3a71b1d44dac1ee915e4ee8b68e68927 https://www.encodeproject.org/files/ENCFF670LBC/@@download/ENCFF670LBC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF102BHO bigWig fold change over control ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF189RMF 432088351 ENCODE Processing Pipeline d10f31bc2ded5e0ba389973c20391125 https://www.encodeproject.org/files/ENCFF102BHO/@@download/ENCFF102BHO.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF729GLM bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF930GGN 5502475 ENCODE Processing Pipeline 6b592703620b0d8d91789a0942bde525 https://www.encodeproject.org/files/ENCFF729GLM/@@download/ENCFF729GLM.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF753WRC bigWig fold change over control ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF189RMF, ENCFF930GGN 720786065 ENCODE Processing Pipeline 0c945b30bec7b3b46e54bc61bfa4bccb https://www.encodeproject.org/files/ENCFF753WRC/@@download/ENCFF753WRC.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF105ZST bigBed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF729GLM 13115879 ENCODE Processing Pipeline 7cdac14978e226bff95b6af9f6f7b2b8 https://www.encodeproject.org/files/ENCFF105ZST/@@download/ENCFF105ZST.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF079PNN bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF189RMF 5483985 ENCODE Processing Pipeline 1b7a6f4c2e4e14551e2f4e1845004c95 https://www.encodeproject.org/files/ENCFF079PNN/@@download/ENCFF079PNN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF076ZRD bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF189RMF, ENCFF930GGN 6338753 ENCODE Processing Pipeline ae2445044660b56962534e2474f74bda https://www.encodeproject.org/files/ENCFF076ZRD/@@download/ENCFF076ZRD.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961QJN bigBed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF079PNN 13062426 ENCODE Processing Pipeline 48ef19bf1f83c6221fb298d4bc167f61 https://www.encodeproject.org/files/ENCFF961QJN/@@download/ENCFF961QJN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF231MDY bigBed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF076ZRD 13158892 ENCODE Processing Pipeline bfbf6a7a75d9335885f98ae6f4c8be45 https://www.encodeproject.org/files/ENCFF231MDY/@@download/ENCFF231MDY.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF914VTC bed narrowPeak conservative idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF076ZRD, ENCFF079PNN, ENCFF419RSJ, ENCFF729GLM 220689 ENCODE Processing Pipeline 28a07b37432666aa70820e3ce094050a https://www.encodeproject.org/files/ENCFF914VTC/@@download/ENCFF914VTC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF874LAC bed narrowPeak optimal idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF076ZRD, ENCFF079PNN, ENCFF419RSJ, ENCFF729GLM 259414 ENCODE Processing Pipeline d0579cc77370b832456d78d13c490fb7 https://www.encodeproject.org/files/ENCFF874LAC/@@download/ENCFF874LAC.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF252CLR bigBed narrowPeak conservative idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF914VTC 416746 ENCODE Processing Pipeline 68e51640d01a06762677f20550167f09 https://www.encodeproject.org/files/ENCFF252CLR/@@download/ENCFF252CLR.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF699VDS bigBed narrowPeak optimal idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF874LAC 470989 ENCODE Processing Pipeline 8f1ff6a53d7bb6077e7d0fd9876d5df7 https://www.encodeproject.org/files/ENCFF699VDS/@@download/ENCFF699VDS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF871XDO bigWig signal p-value ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF509PAA 1131334084 ENCODE Processing Pipeline 22a1cfc22cab7da0305c1f1f3c14c175 https://www.encodeproject.org/files/ENCFF871XDO/@@download/ENCFF871XDO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF765GFY bigWig signal p-value ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF909FDN 1150703570 ENCODE Processing Pipeline 3480455e18ee5f3b275dc7243ceb4f13 https://www.encodeproject.org/files/ENCFF765GFY/@@download/ENCFF765GFY.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF777ZUQ bigWig signal p-value ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF509PAA, ENCFF909FDN 1459977715 ENCODE Processing Pipeline d10b39a9d62edcddf1ace16adbbfca7f https://www.encodeproject.org/files/ENCFF777ZUQ/@@download/ENCFF777ZUQ.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF166AHU bigWig fold change over control ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF509PAA 819310491 ENCODE Processing Pipeline a0ee3dd637bf736dc132fdf5e4732cf1 https://www.encodeproject.org/files/ENCFF166AHU/@@download/ENCFF166AHU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617NUG bigWig fold change over control ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF509PAA, ENCFF909FDN 1293388334 ENCODE Processing Pipeline 6e571a0cf0364806ffd5ec100e55c339 https://www.encodeproject.org/files/ENCFF617NUG/@@download/ENCFF617NUG.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF260SFP bigWig fold change over control ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF909FDN 807891379 ENCODE Processing Pipeline 2603ac5074bc5ba3924eba81a76c9cf6 https://www.encodeproject.org/files/ENCFF260SFP/@@download/ENCFF260SFP.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF461JRP bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF509PAA, ENCFF909FDN 6833283 ENCODE Processing Pipeline 58152feea8d0ca88e5f0c325558b46ec https://www.encodeproject.org/files/ENCFF461JRP/@@download/ENCFF461JRP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF995YHB bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF509PAA 6202782 ENCODE Processing Pipeline 46ae9bdd6b811685056a8d623cf701c2 https://www.encodeproject.org/files/ENCFF995YHB/@@download/ENCFF995YHB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF622AQP bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF909FDN 6276248 ENCODE Processing Pipeline 23c579e00ef205d77a62570bbee24232 https://www.encodeproject.org/files/ENCFF622AQP/@@download/ENCFF622AQP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF941XJO bigBed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF622AQP 13209524 ENCODE Processing Pipeline 4f24c04529802d65be5de5b82517b9d7 https://www.encodeproject.org/files/ENCFF941XJO/@@download/ENCFF941XJO.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF481MJB bigBed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF461JRP 13122474 ENCODE Processing Pipeline 115d7289316d7e2da1a42b4fe0652df4 https://www.encodeproject.org/files/ENCFF481MJB/@@download/ENCFF481MJB.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF978TNA bigBed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF995YHB 13154114 ENCODE Processing Pipeline f8ac2abbbc57423a5dd693fa1af8f0e7 https://www.encodeproject.org/files/ENCFF978TNA/@@download/ENCFF978TNA.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF885BTK bigBed narrowPeak conservative idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF024JUM 404073 ENCODE Processing Pipeline 63cb30f909b7046a91ff6b5c5f855a60 https://www.encodeproject.org/files/ENCFF885BTK/@@download/ENCFF885BTK.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF024JUM bed narrowPeak conservative idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF461JRP, ENCFF622AQP, ENCFF995YHB 205365 ENCODE Processing Pipeline fef33e9b3082f16e0e49ae1276cbc443 https://www.encodeproject.org/files/ENCFF024JUM/@@download/ENCFF024JUM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF204MXR bigBed narrowPeak optimal idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF209YKP 445963 ENCODE Processing Pipeline b2632d73878409bc3d8205e35ed0d48e https://www.encodeproject.org/files/ENCFF204MXR/@@download/ENCFF204MXR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF209YKP bed narrowPeak optimal idr thresholded peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF461JRP, ENCFF622AQP, ENCFF995YHB 235451 ENCODE Processing Pipeline 66a6a14f2e13f421dfe24e2bd97c4fc2 https://www.encodeproject.org/files/ENCFF209YKP/@@download/ENCFF209YKP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000RFQ bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RGA 1014779972 Richard Myers, HAIB 37bed403b5302dfb37bba937052e34f6 https://www.encodeproject.org/files/ENCFF000RFQ/@@download/ENCFF000RFQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RFR bigBed broadPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UQV 1697234 Richard Myers, HAIB b1e784dd23306e525be23ac3f95eeb02 https://www.encodeproject.org/files/ENCFF000RFR/@@download/ENCFF000RFR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RFS bigBed broadPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UQW 1625361 Richard Myers, HAIB a254b062b8a2e55909b5f82613fa27b8 https://www.encodeproject.org/files/ENCFF000RFS/@@download/ENCFF000RFS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RFT bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RGF 1096586558 Richard Myers, HAIB f623d75c4a392447789e560efc7d1884 https://www.encodeproject.org/files/ENCFF000RFT/@@download/ENCFF000RFT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RFW bigWig raw signal ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 63394041 Richard Myers, HAIB e77d0efcc559696b9777da91f5c38640 https://www.encodeproject.org/files/ENCFF000RFW/@@download/ENCFF000RFW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RFX bigWig raw signal ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 60100889 Richard Myers, HAIB 64feef80b2211dc3dfca5aee02d1a362 https://www.encodeproject.org/files/ENCFF000RFX/@@download/ENCFF000RFX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RGA fastq reads ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1048548763 Richard Myers, HAIB 01e217d898f11f4edacf790495ae55b1 https://www.encodeproject.org/files/ENCFF000RGA/@@download/ENCFF000RGA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RGF fastq reads ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1038359917 Richard Myers, HAIB 6f190e705a0008d8728fb0231590a4d0 https://www.encodeproject.org/files/ENCFF000RGF/@@download/ENCFF000RGF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UQV bed broadPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 1 1247914 Richard Myers, HAIB f2dcbce5dd8fa07b530c721cc8ebc2bc https://www.encodeproject.org/files/ENCFF001UQV/@@download/ENCFF001UQV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001UQW bed broadPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 1 1104875 Richard Myers, HAIB c62330c91bb3d2ee04cbcdab5d6ac44a https://www.encodeproject.org/files/ENCFF001UQW/@@download/ENCFF001UQW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CNQ bed narrowPeak optimal idr thresholded peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1253872 ENCODE Consortium Analysis Working Group 61137ce7d04dfac964b972832c1c0de4 https://www.encodeproject.org/files/ENCFF002CNQ/@@download/ENCFF002CNQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF937UYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNQ 2646887 ENCODE Consortium a52384313fd47ed1ce3b6719eb1ec574 https://www.encodeproject.org/files/ENCFF937UYZ/@@download/ENCFF937UYZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF983URL bam unfiltered alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGA, ENCFF807MUK 1226662988 ENCODE Processing Pipeline 52d4ab9777f529baf97b21620d3156d9 https://www.encodeproject.org/files/ENCFF983URL/@@download/ENCFF983URL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF628QPJ bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGA, ENCFF807MUK 613622703 ENCODE Processing Pipeline 357f0c3acce71cd504bdec3d8bf7aca4 https://www.encodeproject.org/files/ENCFF628QPJ/@@download/ENCFF628QPJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF462LBM bam unfiltered alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGF, ENCFF807MUK 1266192115 ENCODE Processing Pipeline c6699f1aef6fbcee192ecc66bac453bf https://www.encodeproject.org/files/ENCFF462LBM/@@download/ENCFF462LBM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF987ZHK bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGF, ENCFF807MUK 739532545 ENCODE Processing Pipeline 762e6cd9526e2dc9102a246e15f7430f https://www.encodeproject.org/files/ENCFF987ZHK/@@download/ENCFF987ZHK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF988FFU bam unfiltered alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGF, ENCFF643CGH 1269253009 ENCODE Processing Pipeline b8b0c62e14b27dd45f3e6ce151e055ba https://www.encodeproject.org/files/ENCFF988FFU/@@download/ENCFF988FFU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF385TLD bam unfiltered alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGA, ENCFF643CGH 1228549087 ENCODE Processing Pipeline a7ab8fd52b36e0743b95d831a8c24d7d https://www.encodeproject.org/files/ENCFF385TLD/@@download/ENCFF385TLD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF928HIN bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGA, ENCFF643CGH 613397078 ENCODE Processing Pipeline 8225bc8dc096598ec64a9248a2aa3954 https://www.encodeproject.org/files/ENCFF928HIN/@@download/ENCFF928HIN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF903WEP bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGF, ENCFF643CGH 739266033 ENCODE Processing Pipeline d6061d341e2d786d2699ef57a59ad2de https://www.encodeproject.org/files/ENCFF903WEP/@@download/ENCFF903WEP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF405NRA bigWig signal p-value ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF987ZHK 390541006 ENCODE Processing Pipeline 89d74c5dce548e55d12df0fc4f7d18dd https://www.encodeproject.org/files/ENCFF405NRA/@@download/ENCFF405NRA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF416TQK bigWig fold change over control ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF987ZHK 323591170 ENCODE Processing Pipeline 4ff41ec5ec1087e494d0f394dc39b178 https://www.encodeproject.org/files/ENCFF416TQK/@@download/ENCFF416TQK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF114SKT bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF987ZHK 4964017 ENCODE Processing Pipeline 14e30d209048f8c2a2b76dbea75f6a35 https://www.encodeproject.org/files/ENCFF114SKT/@@download/ENCFF114SKT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF098QUT bigBed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF114SKT 11108894 ENCODE Processing Pipeline db40bc63bcaaef28c0ad1f62246b5fe3 https://www.encodeproject.org/files/ENCFF098QUT/@@download/ENCFF098QUT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF119DJG bigWig fold change over control ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF628QPJ 275304911 ENCODE Processing Pipeline da7d435f85f544a541143693d0973811 https://www.encodeproject.org/files/ENCFF119DJG/@@download/ENCFF119DJG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF758GUY bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF628QPJ, ENCFF987ZHK 6052140 ENCODE Processing Pipeline a9bc4154a104d2e2909849dd7cd79fc6 https://www.encodeproject.org/files/ENCFF758GUY/@@download/ENCFF758GUY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF846NCI bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF628QPJ 5162873 ENCODE Processing Pipeline 472a4291cdc2556eac9bb183aedca1eb https://www.encodeproject.org/files/ENCFF846NCI/@@download/ENCFF846NCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF468HIN bigBed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF846NCI 11121813 ENCODE Processing Pipeline eaf765993ed1bb99248d0094458dce43 https://www.encodeproject.org/files/ENCFF468HIN/@@download/ENCFF468HIN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF087AGO bigBed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF758GUY 11857079 ENCODE Processing Pipeline 9e89f736befe12c1c7572cd546f6e90e https://www.encodeproject.org/files/ENCFF087AGO/@@download/ENCFF087AGO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF987PUU bigWig signal p-value ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF628QPJ 439571624 ENCODE Processing Pipeline 7aedd9aeaed7bb88816f5a4d6c80d19c https://www.encodeproject.org/files/ENCFF987PUU/@@download/ENCFF987PUU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF981CMV bigWig signal p-value ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF628QPJ, ENCFF987ZHK 492183575 ENCODE Processing Pipeline 0a2fedd007c6c869b576aa776bfb1be1 https://www.encodeproject.org/files/ENCFF981CMV/@@download/ENCFF981CMV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF273OHO bigWig fold change over control ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF628QPJ, ENCFF987ZHK 510433207 ENCODE Processing Pipeline a00ea52a2b640ff536939cd96a66d767 https://www.encodeproject.org/files/ENCFF273OHO/@@download/ENCFF273OHO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF874PNQ bed narrowPeak optimal idr thresholded peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF114SKT, ENCFF758GUY, ENCFF846NCI 1108510 ENCODE Processing Pipeline 6578f7d35c36ea6f9b39a78cd0131e2d https://www.encodeproject.org/files/ENCFF874PNQ/@@download/ENCFF874PNQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF526ANL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF874PNQ 1911327 ENCODE Processing Pipeline 61c116c96302c7fc5bb4a4fc3b6c02cb https://www.encodeproject.org/files/ENCFF526ANL/@@download/ENCFF526ANL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF438GGB bigWig signal p-value ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF903WEP, ENCFF928HIN 492002592 ENCODE Processing Pipeline c9e15ab3c0891fc48b52753227954076 https://www.encodeproject.org/files/ENCFF438GGB/@@download/ENCFF438GGB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF336HVO bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF903WEP, ENCFF928HIN 6052798 ENCODE Processing Pipeline c2a04aeb1328eaadbd189013ccf44d25 https://www.encodeproject.org/files/ENCFF336HVO/@@download/ENCFF336HVO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF315VKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF557OCR 1915211 ENCODE Processing Pipeline 0f017c77fca275aa8bbd86431c6b4919 https://www.encodeproject.org/files/ENCFF315VKB/@@download/ENCFF315VKB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF766YWH bigWig fold change over control ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF928HIN 274998893 ENCODE Processing Pipeline 4239f377625ac44ba4fe3428ec5da45e https://www.encodeproject.org/files/ENCFF766YWH/@@download/ENCFF766YWH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF136ITI bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF928HIN 5161087 ENCODE Processing Pipeline ba50fb1b881972e60fcde9b6536b1112 https://www.encodeproject.org/files/ENCFF136ITI/@@download/ENCFF136ITI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF649YAE bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF903WEP 5070958 ENCODE Processing Pipeline 044fbe8be334b4f0515bd03b0c8cc8df https://www.encodeproject.org/files/ENCFF649YAE/@@download/ENCFF649YAE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF716RDP bigBed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF649YAE 11253199 ENCODE Processing Pipeline c72c8640e3025768d55764982acd3b5b https://www.encodeproject.org/files/ENCFF716RDP/@@download/ENCFF716RDP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF557OCR bed narrowPeak optimal idr thresholded peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF136ITI, ENCFF336HVO, ENCFF419RSJ, ENCFF649YAE 1109836 ENCODE Processing Pipeline c1180631fc589bda74c31aa189e676cf https://www.encodeproject.org/files/ENCFF557OCR/@@download/ENCFF557OCR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF705TOU bigWig signal p-value ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF928HIN 440466190 ENCODE Processing Pipeline aa3b971b0bddbfb01426c5e15887a297 https://www.encodeproject.org/files/ENCFF705TOU/@@download/ENCFF705TOU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF179OTI bigWig signal p-value ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF903WEP 426368125 ENCODE Processing Pipeline 77a7ec8c836dd084fcec1b38ea24611d https://www.encodeproject.org/files/ENCFF179OTI/@@download/ENCFF179OTI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF819MOD bigWig fold change over control ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF903WEP 323455214 ENCODE Processing Pipeline 854763f5d4c7377f2304422f06ebeeb1 https://www.encodeproject.org/files/ENCFF819MOD/@@download/ENCFF819MOD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF087JUG bigWig fold change over control ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF903WEP, ENCFF928HIN 510949569 ENCODE Processing Pipeline 381ea3f64493c46cf11ceb9c800d0625 https://www.encodeproject.org/files/ENCFF087JUG/@@download/ENCFF087JUG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF804EUE bigBed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF136ITI 11120727 ENCODE Processing Pipeline 5da6e62756bd6f0aadb0c24514ecf06d https://www.encodeproject.org/files/ENCFF804EUE/@@download/ENCFF804EUE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF156WOV bigBed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF336HVO 11858038 ENCODE Processing Pipeline 0e40aa58a6e7a2ccb70daf9aa7ca4c27 https://www.encodeproject.org/files/ENCFF156WOV/@@download/ENCFF156WOV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000XGG bam alignments ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XGO 327518781 Michael Snyder, Stanford e9b00802ce6a91150bbc3d3961e37a9e https://www.encodeproject.org/files/ENCFF000XGG/@@download/ENCFF000XGG.bam hg19 released low read length biological replicates with identical biosample ENCFF000XGH bam alignments ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XGQ 356622796 Michael Snyder, Stanford 89c96f9e474097c9e2dd201c185f452d https://www.encodeproject.org/files/ENCFF000XGH/@@download/ENCFF000XGH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XGI bigBed narrowPeak peaks ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIP 218518 Michael Snyder, Stanford 0a95e100bb1a44f5ffb20d8d6cb76707 https://www.encodeproject.org/files/ENCFF000XGI/@@download/ENCFF000XGI.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XGJ bigWig signal ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 425068439 Michael Snyder, Stanford 08b774ff3069869130a01e614ad028c5 https://www.encodeproject.org/files/ENCFF000XGJ/@@download/ENCFF000XGJ.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XGO fastq reads ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 884656010 Michael Snyder, Stanford decd5f29a524a52d84d280c6ee1f2c2c https://www.encodeproject.org/files/ENCFF000XGO/@@download/ENCFF000XGO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XGQ fastq reads ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 980341391 Michael Snyder, Stanford 2df13a01c30c1ecd625ae8c8b5d635e7 https://www.encodeproject.org/files/ENCFF000XGQ/@@download/ENCFF000XGQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VIP bed narrowPeak peaks ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 60055 Michael Snyder, Stanford 08d4bf4501a2ba904a6b484452767824 https://www.encodeproject.org/files/ENCFF001VIP/@@download/ENCFF001VIP.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CSO bed narrowPeak optimal idr thresholded peaks ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 42861 ENCODE Consortium Analysis Working Group 61be13789db82a32b707fa71aa317854 https://www.encodeproject.org/files/ENCFF002CSO/@@download/ENCFF002CSO.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF450YTL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSO 206550 ENCODE Consortium 4c496318d3b9ce4b52cf720aaeb32d82 https://www.encodeproject.org/files/ENCFF450YTL/@@download/ENCFF450YTL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000WDH bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WEB 536963972 Michael Snyder, Stanford a4cbb7fd953957e502d8619ccace4ad1 https://www.encodeproject.org/files/ENCFF000WDH/@@download/ENCFF000WDH.bam hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDL bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFH 2531020 Michael Snyder, Stanford 4300a6f5f0ac45d76ce406cb8489edce https://www.encodeproject.org/files/ENCFF000WDL/@@download/ENCFF000WDL.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDM bigWig signal ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 448221944 Michael Snyder, Stanford 3ac7a3a4684721e481d116cd5fa3f0e8 https://www.encodeproject.org/files/ENCFF000WDM/@@download/ENCFF000WDM.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WDN bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WEC 662412955 Michael Snyder, Stanford ba46b6d5d79b7f6357190155ff3b3a9d https://www.encodeproject.org/files/ENCFF000WDN/@@download/ENCFF000WDN.bam hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WEB fastq reads ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 999114722 Michael Snyder, Stanford ecc197936a700fabbd9ac8d9a51672d2 https://www.encodeproject.org/files/ENCFF000WEB/@@download/ENCFF000WEB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WEC fastq reads ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1480983413 Michael Snyder, Stanford 2bccef83f6d812e45f24d187d215e23a https://www.encodeproject.org/files/ENCFF000WEC/@@download/ENCFF000WEC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VFH bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1191203 Michael Snyder, Stanford 3674a321ff9005ad680e3d1a4233ce54 https://www.encodeproject.org/files/ENCFF001VFH/@@download/ENCFF001VFH.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPN bed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 746137 ENCODE Consortium Analysis Working Group a2acdd468555c5743295f7d2f82fab6c https://www.encodeproject.org/files/ENCFF002CPN/@@download/ENCFF002CPN.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF798DPZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPN 1645029 ENCODE Consortium a464a0eb8ad85dc1506f527d784c0d55 https://www.encodeproject.org/files/ENCFF798DPZ/@@download/ENCFF798DPZ.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF170WOC bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF643CGH 1612858275 ENCODE Processing Pipeline 4d5dbb97e5c44ebbf27f080482677a23 https://www.encodeproject.org/files/ENCFF170WOC/@@download/ENCFF170WOC.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF375OQR bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF643CGH 702595643 ENCODE Processing Pipeline 2368f0e65593f136dd913b7c4132a89f https://www.encodeproject.org/files/ENCFF375OQR/@@download/ENCFF375OQR.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF253RTD bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF643CGH 992778955 ENCODE Processing Pipeline cca694de6583e95d0ac7189203f96739 https://www.encodeproject.org/files/ENCFF253RTD/@@download/ENCFF253RTD.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF759YVV bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF643CGH 1077774180 ENCODE Processing Pipeline 3d77f884d91757a7282afbcb839ad465 https://www.encodeproject.org/files/ENCFF759YVV/@@download/ENCFF759YVV.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF784URN bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF807MUK 1074248287 ENCODE Processing Pipeline e0a4eb5704b39839103f73c0bcfe5e8e https://www.encodeproject.org/files/ENCFF784URN/@@download/ENCFF784URN.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF415OZI bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF807MUK 701402384 ENCODE Processing Pipeline f6d03568e08ffe7bac80c0968e9abed9 https://www.encodeproject.org/files/ENCFF415OZI/@@download/ENCFF415OZI.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF243VQR bam unfiltered alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF807MUK 1606112610 ENCODE Processing Pipeline fa35b16a6d262d5804b15b762c0bef93 https://www.encodeproject.org/files/ENCFF243VQR/@@download/ENCFF243VQR.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF797XWM bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF807MUK 992869792 ENCODE Processing Pipeline d625ca2d02329028eef7e73d58c9e34a https://www.encodeproject.org/files/ENCFF797XWM/@@download/ENCFF797XWM.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF599KQW bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 180603007 ENCODE Processing Pipeline 8b50d8814e667dd6f841827eb08d239a https://www.encodeproject.org/files/ENCFF599KQW/@@download/ENCFF599KQW.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF235BXX bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO, ENCFF797XWM 606487259 ENCODE Processing Pipeline ca933deb6e01a4600f871eb9a5677acc https://www.encodeproject.org/files/ENCFF235BXX/@@download/ENCFF235BXX.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF667DQO bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF246ZRW 10180276 ENCODE Processing Pipeline fb56ec9846abeaae92f99911dcefa311 https://www.encodeproject.org/files/ENCFF667DQO/@@download/ENCFF667DQO.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF496PLN bed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF027ZKP, ENCFF246ZRW, ENCFF249QCH 346205 ENCODE Processing Pipeline 1d4b668c7e10bf1bfd1e1eb5a081a3cf https://www.encodeproject.org/files/ENCFF496PLN/@@download/ENCFF496PLN.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF737MCQ bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 72457736 ENCODE Processing Pipeline 24dcd59eeccdbcf80b20fa875fc6737f https://www.encodeproject.org/files/ENCFF737MCQ/@@download/ENCFF737MCQ.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF175HVC bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF249QCH 11162205 ENCODE Processing Pipeline a9e187f6bdf81ac5a665add35b07d3bf https://www.encodeproject.org/files/ENCFF175HVC/@@download/ENCFF175HVC.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF667FEX bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 299414368 ENCODE Processing Pipeline 0e72e2e4b74d767cf50e6767f82fefdb https://www.encodeproject.org/files/ENCFF667FEX/@@download/ENCFF667FEX.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF823SMT bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF027ZKP 10302504 ENCODE Processing Pipeline b3691d0c6cf1b86f314ea62180caf3cb https://www.encodeproject.org/files/ENCFF823SMT/@@download/ENCFF823SMT.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF246ZRW bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 4420736 ENCODE Processing Pipeline 7b5ac62f88b531789ba07c59c81d94fb https://www.encodeproject.org/files/ENCFF246ZRW/@@download/ENCFF246ZRW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF027ZKP bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 3990972 ENCODE Processing Pipeline 9fc4e54229d238b968ec7f8905b0b566 https://www.encodeproject.org/files/ENCFF027ZKP/@@download/ENCFF027ZKP.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF249QCH bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO, ENCFF797XWM 4996467 ENCODE Processing Pipeline 082fee7b6754e453daa45d33d18d8903 https://www.encodeproject.org/files/ENCFF249QCH/@@download/ENCFF249QCH.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF872KIR bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 323337734 ENCODE Processing Pipeline e285fa51934e7d3ddfa4b3e18c23ce5f https://www.encodeproject.org/files/ENCFF872KIR/@@download/ENCFF872KIR.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF470DIG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF496PLN 649666 ENCODE Processing Pipeline c6719e72db2b9e9f0e3950754f8a34ab https://www.encodeproject.org/files/ENCFF470DIG/@@download/ENCFF470DIG.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF815ERA bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO, ENCFF797XWM 158202007 ENCODE Processing Pipeline 24ddd07febac0ae66ba93340e4df722f https://www.encodeproject.org/files/ENCFF815ERA/@@download/ENCFF815ERA.bigWig hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF686FLD bed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF027ZKP, ENCFF246ZRW, ENCFF249QCH 573680 ENCODE Processing Pipeline bba9c26b2d0c073aaa60505f9cfdb10b https://www.encodeproject.org/files/ENCFF686FLD/@@download/ENCFF686FLD.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF218GKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF686FLD 975036 ENCODE Processing Pipeline f3ec709aa0b92a86987e7c10a6435a33 https://www.encodeproject.org/files/ENCFF218GKJ/@@download/ENCFF218GKJ.bigBed hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF054NUV bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 301862165 ENCODE Processing Pipeline e864dbee93c721eb58fb758d1bea234a https://www.encodeproject.org/files/ENCFF054NUV/@@download/ENCFF054NUV.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF712WUS bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF253RTD, ENCFF477ZKJ 322975185 ENCODE Processing Pipeline 82e5c92a4d30ea93d917defad4c07184 https://www.encodeproject.org/files/ENCFF712WUS/@@download/ENCFF712WUS.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF599ZQS bed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF468QVP, ENCFF534PUK, ENCFF884JVT 349214 ENCODE Processing Pipeline 109eb8b98f3bfcc980da4455437df086 https://www.encodeproject.org/files/ENCFF599ZQS/@@download/ENCFF599ZQS.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF782WWH bigWig fold change over control ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RTD, ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 605728203 ENCODE Processing Pipeline 9f1de97dc1d18640e16d4b3d8ed6f825 https://www.encodeproject.org/files/ENCFF782WWH/@@download/ENCFF782WWH.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF572RPI bed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF468QVP, ENCFF534PUK, ENCFF884JVT 581020 ENCODE Processing Pipeline f5d8168c6d84925ca4a739a5c960936b https://www.encodeproject.org/files/ENCFF572RPI/@@download/ENCFF572RPI.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF640GZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF572RPI 984917 ENCODE Processing Pipeline 8a33918bcb1b5ac4e4b7e96814fc4cb2 https://www.encodeproject.org/files/ENCFF640GZZ/@@download/ENCFF640GZZ.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF884JVT bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF253RTD, ENCFF477ZKJ 3980346 ENCODE Processing Pipeline 3d8eb4d0cdb033ad48c6c0794d3812a8 https://www.encodeproject.org/files/ENCFF884JVT/@@download/ENCFF884JVT.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF468QVP bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RTD, ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 4999862 ENCODE Processing Pipeline 7f0b2330a3e54a0928e1c17b0abfddce https://www.encodeproject.org/files/ENCFF468QVP/@@download/ENCFF468QVP.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF342OUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF599ZQS 654440 ENCODE Processing Pipeline c1fb4f3d0a8d4612bae636d370a33ddd https://www.encodeproject.org/files/ENCFF342OUF/@@download/ENCFF342OUF.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF179PKD bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 180558957 ENCODE Processing Pipeline a15aae918d164aab4054c707b15c3afd https://www.encodeproject.org/files/ENCFF179PKD/@@download/ENCFF179PKD.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF645TXU bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF253RTD, ENCFF477ZKJ 72463915 ENCODE Processing Pipeline 1657545e153d330f2aee610bd733bc1d https://www.encodeproject.org/files/ENCFF645TXU/@@download/ENCFF645TXU.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF325GGH bigWig signal p-value ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RTD, ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 156850681 ENCODE Processing Pipeline 46bf872c21576b68c53f35810f1680a9 https://www.encodeproject.org/files/ENCFF325GGH/@@download/ENCFF325GGH.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF534PUK bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375OQR, ENCFF477ZKJ, ENCFF710SMS 4419724 ENCODE Processing Pipeline e5515aea173d6988dbc96b10a4f507ad https://www.encodeproject.org/files/ENCFF534PUK/@@download/ENCFF534PUK.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF991TOJ bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF534PUK 10176707 ENCODE Processing Pipeline a50e4629f045de56cf07b52be1bb0868 https://www.encodeproject.org/files/ENCFF991TOJ/@@download/ENCFF991TOJ.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF584TQY bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF884JVT 10315189 ENCODE Processing Pipeline 98cd1635c9e3dd90d1f4af23b7e444cb https://www.encodeproject.org/files/ENCFF584TQY/@@download/ENCFF584TQY.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF494WLU bigBed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF468QVP 11166178 ENCODE Processing Pipeline 22006fc1a4bec7c44a7b4827a7a1dce0 https://www.encodeproject.org/files/ENCFF494WLU/@@download/ENCFF494WLU.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OOQ bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OPC 1001893091 Richard Myers, HAIB 1990c8409bee3c93a1c0f6ca728c2e65 https://www.encodeproject.org/files/ENCFF000OOQ/@@download/ENCFF000OOQ.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOR bigBed broadPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBI 459419 Richard Myers, HAIB 5065b8d18a13c71744b98fed9b3a4d61 https://www.encodeproject.org/files/ENCFF000OOR/@@download/ENCFF000OOR.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOS bigBed broadPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBJ 166727 Richard Myers, HAIB 43fd5ed101d4c2288accf978e12c3c27 https://www.encodeproject.org/files/ENCFF000OOS/@@download/ENCFF000OOS.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOT bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OPF 572894109 Richard Myers, HAIB 5d44df373748a5c3e29178e3168b44c2 https://www.encodeproject.org/files/ENCFF000OOT/@@download/ENCFF000OOT.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OOV bigWig raw signal ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 14239752 Richard Myers, HAIB 0501441389402faee68d2a65e9d328d0 https://www.encodeproject.org/files/ENCFF000OOV/@@download/ENCFF000OOV.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OOW bigWig raw signal ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 4859158 Richard Myers, HAIB 6877c5d28d98709e2a54b57f0d33faed https://www.encodeproject.org/files/ENCFF000OOW/@@download/ENCFF000OOW.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OPC fastq reads ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 863174329 Richard Myers, HAIB 018dbc3e83a2c0355c00ad0e03575dcd https://www.encodeproject.org/files/ENCFF000OPC/@@download/ENCFF000OPC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OPF fastq reads ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 616471970 Richard Myers, HAIB f18511037604ec7c8785072f5686baf9 https://www.encodeproject.org/files/ENCFF000OPF/@@download/ENCFF000OPF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UBI bed broadPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 260473 Richard Myers, HAIB 4b6f9d0096d0e2e6aa65bb73307f0a77 https://www.encodeproject.org/files/ENCFF001UBI/@@download/ENCFF001UBI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001UBJ bed broadPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 78391 Richard Myers, HAIB b778bd60e6b8f5a24975f4af2fd8c007 https://www.encodeproject.org/files/ENCFF001UBJ/@@download/ENCFF001UBJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CIX bed narrowPeak optimal idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 113527 ENCODE Consortium Analysis Working Group 9b30d396b2ae6ddbbc58f47f039335b7 https://www.encodeproject.org/files/ENCFF002CIX/@@download/ENCFF002CIX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF039KDK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIX 277522 ENCODE Consortium 1aff68adef299a852cf20b3e993f6aef https://www.encodeproject.org/files/ENCFF039KDK/@@download/ENCFF039KDK.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF676XEO bam unfiltered alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPF, ENCFF643CGH 777008451 ENCODE Processing Pipeline a6b0e1f7d5f6607c7bcf8df096600a18 https://www.encodeproject.org/files/ENCFF676XEO/@@download/ENCFF676XEO.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF325UFA bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPF, ENCFF643CGH 356890283 ENCODE Processing Pipeline 765895942430724feff22f23849e51cd https://www.encodeproject.org/files/ENCFF325UFA/@@download/ENCFF325UFA.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF517RFE bam unfiltered alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPC, ENCFF643CGH 1236121945 ENCODE Processing Pipeline 351f673934960c887ee5f7e608610116 https://www.encodeproject.org/files/ENCFF517RFE/@@download/ENCFF517RFE.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF932SAB bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPC, ENCFF643CGH 834961698 ENCODE Processing Pipeline 1538b5be1a5b2135a97704cd70302075 https://www.encodeproject.org/files/ENCFF932SAB/@@download/ENCFF932SAB.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF090DDS bam unfiltered alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPF, ENCFF807MUK 775513917 ENCODE Processing Pipeline 46c6cb5c23925c46c9cbb5526c50d741 https://www.encodeproject.org/files/ENCFF090DDS/@@download/ENCFF090DDS.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF141XQF bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPF, ENCFF807MUK 357156878 ENCODE Processing Pipeline 8a3bbf81135b3be43210cabbbe52a2c5 https://www.encodeproject.org/files/ENCFF141XQF/@@download/ENCFF141XQF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF133HNA bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPC, ENCFF807MUK 835317640 ENCODE Processing Pipeline d01fc2b5b1a318d7512f1945015a03b4 https://www.encodeproject.org/files/ENCFF133HNA/@@download/ENCFF133HNA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF468VIP bam unfiltered alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPC, ENCFF807MUK 1231731477 ENCODE Processing Pipeline e6809a8a47da01f2424e363dc7710392 https://www.encodeproject.org/files/ENCFF468VIP/@@download/ENCFF468VIP.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF497XQQ bigWig signal p-value ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF932SAB, ENCFF948LKH 524163006 ENCODE Processing Pipeline e954615fa88bd3a84fc9092844d6c298 https://www.encodeproject.org/files/ENCFF497XQQ/@@download/ENCFF497XQQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF641WZV bigWig signal p-value ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF325UFA, ENCFF948LKH 373314263 ENCODE Processing Pipeline 37d3cef55fb4db0c8ddc6d8f624990d1 https://www.encodeproject.org/files/ENCFF641WZV/@@download/ENCFF641WZV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF202PVG bigWig signal p-value ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325UFA, ENCFF932SAB, ENCFF948LKH 527259129 ENCODE Processing Pipeline fcbbca1531d6391a60c872eb73684461 https://www.encodeproject.org/files/ENCFF202PVG/@@download/ENCFF202PVG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF542BRR bigWig fold change over control ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF932SAB, ENCFF948LKH 462832843 ENCODE Processing Pipeline 9c22414264320b2bf7db2ef0c6e2edcb https://www.encodeproject.org/files/ENCFF542BRR/@@download/ENCFF542BRR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF931OAX bigWig fold change over control ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF325UFA, ENCFF948LKH 232819346 ENCODE Processing Pipeline 70fcb6f8955f000f7cd1e709dc90241a https://www.encodeproject.org/files/ENCFF931OAX/@@download/ENCFF931OAX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF430ARK bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325UFA, ENCFF932SAB, ENCFF948LKH 6060432 ENCODE Processing Pipeline 906206bc26222f0b9918d0163235c81c https://www.encodeproject.org/files/ENCFF430ARK/@@download/ENCFF430ARK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF391OZF bigBed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF615FBI 12728909 ENCODE Processing Pipeline 3fa2c8c7ed80451728f26ac792ee657d https://www.encodeproject.org/files/ENCFF391OZF/@@download/ENCFF391OZF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF401DOJ bigWig fold change over control ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325UFA, ENCFF932SAB, ENCFF948LKH 577752723 ENCODE Processing Pipeline 518a04b8d958b3e4e31bb070d972e5b5 https://www.encodeproject.org/files/ENCFF401DOJ/@@download/ENCFF401DOJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF500YWM bigBed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF430ARK 13246924 ENCODE Processing Pipeline 7ef10736f51681ab907a4b35d4861341 https://www.encodeproject.org/files/ENCFF500YWM/@@download/ENCFF500YWM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF615FBI bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF325UFA, ENCFF948LKH 4900188 ENCODE Processing Pipeline bf4644ec277238715636eba755f578f1 https://www.encodeproject.org/files/ENCFF615FBI/@@download/ENCFF615FBI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF225GFQ bed narrowPeak optimal idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF430ARK, ENCFF615FBI, ENCFF681LZY 162870 ENCODE Processing Pipeline 1b76a66a073593c6aa559fcbadc5560c https://www.encodeproject.org/files/ENCFF225GFQ/@@download/ENCFF225GFQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF681LZY bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF932SAB, ENCFF948LKH 5436660 ENCODE Processing Pipeline 743c98ef4aec51a64d5eab36d300fe4f https://www.encodeproject.org/files/ENCFF681LZY/@@download/ENCFF681LZY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF272LNE bigBed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF681LZY 13121229 ENCODE Processing Pipeline 7e36ba3a591ffbba2f0ea27843e6d9e0 https://www.encodeproject.org/files/ENCFF272LNE/@@download/ENCFF272LNE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF743LHV bed narrowPeak conservative idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF430ARK, ENCFF615FBI, ENCFF681LZY 92313 ENCODE Processing Pipeline 857120ce2a45d566c6c711b461b8a9cf https://www.encodeproject.org/files/ENCFF743LHV/@@download/ENCFF743LHV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF271RSO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF225GFQ 346304 ENCODE Processing Pipeline 7004b2cf53aa5299f001415a98f4b1d1 https://www.encodeproject.org/files/ENCFF271RSO/@@download/ENCFF271RSO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF625NTM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF743LHV 240099 ENCODE Processing Pipeline 51fd27ddbef1b072aad42054ff3e6fbd https://www.encodeproject.org/files/ENCFF625NTM/@@download/ENCFF625NTM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF494HZY bigWig signal p-value ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF133HNA, ENCFF356DXM 521624714 ENCODE Processing Pipeline 79beb108c4f3278e5d37535468d4cbb5 https://www.encodeproject.org/files/ENCFF494HZY/@@download/ENCFF494HZY.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF310LBO bigWig fold change over control ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF133HNA, ENCFF356DXM 461226426 ENCODE Processing Pipeline 57304298b87b97d860b1be776067b592 https://www.encodeproject.org/files/ENCFF310LBO/@@download/ENCFF310LBO.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF409FPP bigWig signal p-value ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141XQF, ENCFF356DXM 415365195 ENCODE Processing Pipeline 86d941035913e6f0d3af5a0e2b780055 https://www.encodeproject.org/files/ENCFF409FPP/@@download/ENCFF409FPP.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF145VGW bigWig signal p-value ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF133HNA, ENCFF141XQF, ENCFF356DXM 527590270 ENCODE Processing Pipeline 046abf14dcff6ac07aea6b1c4eb2dd84 https://www.encodeproject.org/files/ENCFF145VGW/@@download/ENCFF145VGW.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF527DUE bigWig fold change over control ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141XQF, ENCFF356DXM 230611122 ENCODE Processing Pipeline c6823c776b3ee08c8d08f8237cd736ef https://www.encodeproject.org/files/ENCFF527DUE/@@download/ENCFF527DUE.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF357VRF bigWig fold change over control ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF133HNA, ENCFF141XQF, ENCFF356DXM 585975315 ENCODE Processing Pipeline acda5d88d3f13e9a1aa23cbc2392e0de https://www.encodeproject.org/files/ENCFF357VRF/@@download/ENCFF357VRF.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF108EBE bigBed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF027RYJ 13278659 ENCODE Processing Pipeline eea5847683fbd3df27a639782d9084ee https://www.encodeproject.org/files/ENCFF108EBE/@@download/ENCFF108EBE.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF352YTI bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF133HNA, ENCFF356DXM 5466768 ENCODE Processing Pipeline 73685a6b59b4efffd6bf7ca56e436d7d https://www.encodeproject.org/files/ENCFF352YTI/@@download/ENCFF352YTI.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF027RYJ bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF133HNA, ENCFF141XQF, ENCFF356DXM 6092418 ENCODE Processing Pipeline 4da75f23ad5f171fca08827e541c2a75 https://www.encodeproject.org/files/ENCFF027RYJ/@@download/ENCFF027RYJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF720KSI bigBed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF814FEG 12721436 ENCODE Processing Pipeline b919efe0ef81e2bbcfd0ae3a14b7e84d https://www.encodeproject.org/files/ENCFF720KSI/@@download/ENCFF720KSI.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF894MNP bed narrowPeak optimal idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF027RYJ, ENCFF352YTI, ENCFF814FEG 169751 ENCODE Processing Pipeline 35b95ff5dd3e74989c0a226c380141bd https://www.encodeproject.org/files/ENCFF894MNP/@@download/ENCFF894MNP.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF814FEG bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141XQF, ENCFF356DXM 4950981 ENCODE Processing Pipeline 12b39634b32096304bc95edd7e8d61cc https://www.encodeproject.org/files/ENCFF814FEG/@@download/ENCFF814FEG.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF926KPE bigBed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF352YTI 13144158 ENCODE Processing Pipeline 2a153e8b5c44ee34da0991c14851ce64 https://www.encodeproject.org/files/ENCFF926KPE/@@download/ENCFF926KPE.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF493ZGY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF563NET 244625 ENCODE Processing Pipeline 54e9b5e3ab64b366449053b64b41390f https://www.encodeproject.org/files/ENCFF493ZGY/@@download/ENCFF493ZGY.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF145OKW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF894MNP 355016 ENCODE Processing Pipeline 39d7e3894db8a0a8809f5e683e972e28 https://www.encodeproject.org/files/ENCFF145OKW/@@download/ENCFF145OKW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF563NET bed narrowPeak conservative idr thresholded peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF027RYJ, ENCFF352YTI, ENCFF814FEG 95699 ENCODE Processing Pipeline a95fc8e2c2c7601909b727a948ee5d24 https://www.encodeproject.org/files/ENCFF563NET/@@download/ENCFF563NET.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OCD bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000OCO 1721673923 Richard Myers, HAIB cf5e1a3e34070deb95606c8c9819bccf https://www.encodeproject.org/files/ENCFF000OCD/@@download/ENCFF000OCD.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCF bigBed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TYS 2012942 Richard Myers, HAIB b96e7ba9949eba26278f248e5d0b05bc https://www.encodeproject.org/files/ENCFF000OCF/@@download/ENCFF000OCF.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCG bigBed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TYU 1803337 Richard Myers, HAIB 88d5913a8f20627e3679b0ab39423a1a https://www.encodeproject.org/files/ENCFF000OCG/@@download/ENCFF000OCG.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCI bigWig raw signal ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 93108974 Richard Myers, HAIB 8038385b98273771ca254c5b63be221a https://www.encodeproject.org/files/ENCFF000OCI/@@download/ENCFF000OCI.bigWig hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000OCJ bigWig raw signal ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 62928729 Richard Myers, HAIB e32681ab843c80c1d1226ed1b4476ec4 https://www.encodeproject.org/files/ENCFF000OCJ/@@download/ENCFF000OCJ.bigWig hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000OCK bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000OCP 1956068426 Richard Myers, HAIB 7500f4418ad99edb9818b3843782aff4 https://www.encodeproject.org/files/ENCFF000OCK/@@download/ENCFF000OCK.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCO fastq reads ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1775160382 Richard Myers, HAIB e38468b345305b740ce2957d4915b6bd https://www.encodeproject.org/files/ENCFF000OCO/@@download/ENCFF000OCO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OCP fastq reads ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1930366302 Richard Myers, HAIB 9484a8e46d2c7abab24aa55ad1c04bf1 https://www.encodeproject.org/files/ENCFF000OCP/@@download/ENCFF000OCP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TYS bed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 1 1351121 Richard Myers, HAIB 3f97af6157a31ed4e33c6ee4335241d1 https://www.encodeproject.org/files/ENCFF001TYS/@@download/ENCFF001TYS.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001TYU bed broadPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 1 1153047 Richard Myers, HAIB cb8749a7564b1149d051e9ee3e15fed9 https://www.encodeproject.org/files/ENCFF001TYU/@@download/ENCFF001TYU.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CHS bed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1352322 ENCODE Consortium Analysis Working Group 302146bfd3784632e94fe3ef1dde166f https://www.encodeproject.org/files/ENCFF002CHS/@@download/ENCFF002CHS.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF692ISE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHS 3053993 ENCODE Consortium 7df587d6a487b12c59653d34e375bb0e https://www.encodeproject.org/files/ENCFF692ISE/@@download/ENCFF692ISE.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF038MRS bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF643CGH 1871583302 ENCODE Processing Pipeline 3c8b302e303dd579ead4dbf304f7d8d7 https://www.encodeproject.org/files/ENCFF038MRS/@@download/ENCFF038MRS.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF884LEJ bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF643CGH 1310865014 ENCODE Processing Pipeline 2c7328f9c0522b10017e23b87d6c443c https://www.encodeproject.org/files/ENCFF884LEJ/@@download/ENCFF884LEJ.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF405AFR bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF643CGH 2086585384 ENCODE Processing Pipeline 594c8f737520e87c45837644633fc0f9 https://www.encodeproject.org/files/ENCFF405AFR/@@download/ENCFF405AFR.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF579PRC bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF643CGH 1228544425 ENCODE Processing Pipeline 4fde830e948cda520da031390b6c7586 https://www.encodeproject.org/files/ENCFF579PRC/@@download/ENCFF579PRC.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF274RRW bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF807MUK 1871001660 ENCODE Processing Pipeline 10504dd4087f4cc70e3ebaebfb3bb13c https://www.encodeproject.org/files/ENCFF274RRW/@@download/ENCFF274RRW.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF187NWS bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF807MUK 1223093856 ENCODE Processing Pipeline 2b08f5391556de23d2685890c27c597c https://www.encodeproject.org/files/ENCFF187NWS/@@download/ENCFF187NWS.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF102ABY bam unfiltered alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF807MUK 2085249488 ENCODE Processing Pipeline f94f2ea8064ee009416f26e16d82033a https://www.encodeproject.org/files/ENCFF102ABY/@@download/ENCFF102ABY.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF987SJL bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF807MUK 1304072691 ENCODE Processing Pipeline 3d84de396b7843d51a9ee68831ba31fb https://www.encodeproject.org/files/ENCFF987SJL/@@download/ENCFF987SJL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF012VSZ bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF579PRC 561425339 ENCODE Processing Pipeline c321f37255b51135b5cde9f09d312885 https://www.encodeproject.org/files/ENCFF012VSZ/@@download/ENCFF012VSZ.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF162QGZ bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF884LEJ 6272224 ENCODE Processing Pipeline 274e80d557c26e101e561d1f7b6d0b54 https://www.encodeproject.org/files/ENCFF162QGZ/@@download/ENCFF162QGZ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF335BBU bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF537DAJ, ENCFF579PRC, ENCFF884LEJ 914955227 ENCODE Processing Pipeline 8f187dc3fa90a2f2b495c34eeacbec27 https://www.encodeproject.org/files/ENCFF335BBU/@@download/ENCFF335BBU.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF995DLI bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF537DAJ, ENCFF579PRC, ENCFF884LEJ 803540294 ENCODE Processing Pipeline 12f224b4da14ee03364a0184657f137e https://www.encodeproject.org/files/ENCFF995DLI/@@download/ENCFF995DLI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF369GXX bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF369MFU 13409750 ENCODE Processing Pipeline a7f40fd7b11fb737cd4f77b34ae2ad27 https://www.encodeproject.org/files/ENCFF369GXX/@@download/ENCFF369GXX.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF850UWN bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF884LEJ 556746961 ENCODE Processing Pipeline 358067426c048c83cb397c526b2636b0 https://www.encodeproject.org/files/ENCFF850UWN/@@download/ENCFF850UWN.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF369MFU bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF579PRC 6793826 ENCODE Processing Pipeline 655c667f55d86da02c20a1d2e8834dbe https://www.encodeproject.org/files/ENCFF369MFU/@@download/ENCFF369MFU.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF309SPQ bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF537DAJ, ENCFF579PRC, ENCFF884LEJ 6617463 ENCODE Processing Pipeline d40c8272c3c83502c42cceac5214dc4e https://www.encodeproject.org/files/ENCFF309SPQ/@@download/ENCFF309SPQ.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF226HQN bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF309SPQ 12876528 ENCODE Processing Pipeline a12bbacdc307b529f373d64761ed1619 https://www.encodeproject.org/files/ENCFF226HQN/@@download/ENCFF226HQN.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF677QUK bed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF162QGZ, ENCFF309SPQ, ENCFF369MFU, ENCFF419RSJ 1217020 ENCODE Processing Pipeline 7f24bbb13e0a76433ca8fb20b323147e https://www.encodeproject.org/files/ENCFF677QUK/@@download/ENCFF677QUK.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF248LUS bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF162QGZ 12713207 ENCODE Processing Pipeline 01a42451547f53589f3d8fc1605c6413 https://www.encodeproject.org/files/ENCFF248LUS/@@download/ENCFF248LUS.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF657ILV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF017CJU 2002352 ENCODE Processing Pipeline d5aa41f64fa195f1746cfaaa1dd426a2 https://www.encodeproject.org/files/ENCFF657ILV/@@download/ENCFF657ILV.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF224GNF bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF579PRC 749227463 ENCODE Processing Pipeline d79e412ca8a9908d3d7ab3c7788f9331 https://www.encodeproject.org/files/ENCFF224GNF/@@download/ENCFF224GNF.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF248JTC bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF884LEJ 728533073 ENCODE Processing Pipeline 7e1d57c37a9871019d1046345a96639d https://www.encodeproject.org/files/ENCFF248JTC/@@download/ENCFF248JTC.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF017CJU bed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF162QGZ, ENCFF309SPQ, ENCFF369MFU, ENCFF419RSJ 1070026 ENCODE Processing Pipeline 89f429f7bb751ad117407b25bc2415c4 https://www.encodeproject.org/files/ENCFF017CJU/@@download/ENCFF017CJU.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF102DRN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF677QUK 2208462 ENCODE Processing Pipeline 9ace97b5ec472de575574ec36554867c https://www.encodeproject.org/files/ENCFF102DRN/@@download/ENCFF102DRN.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF255ZHC bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 618591245 ENCODE Processing Pipeline 8b891fdae0316aff7f9af0c5cb216067 https://www.encodeproject.org/files/ENCFF255ZHC/@@download/ENCFF255ZHC.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF302PDU bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 562878581 ENCODE Processing Pipeline 07fbdeb043990716b843c0f05e0746c5 https://www.encodeproject.org/files/ENCFF302PDU/@@download/ENCFF302PDU.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF106VZH bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 676423514 ENCODE Processing Pipeline 4eb85791264180f597c6837e8355e3e1 https://www.encodeproject.org/files/ENCFF106VZH/@@download/ENCFF106VZH.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF760PWN bigWig signal p-value ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF187NWS, ENCFF508HCX, ENCFF987SJL 801586221 ENCODE Processing Pipeline 725b752e4c5f1988f8d541a5036027cb https://www.encodeproject.org/files/ENCFF760PWN/@@download/ENCFF760PWN.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF153QVS bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 560449408 ENCODE Processing Pipeline 4088fda573d7e88aae867606f652a569 https://www.encodeproject.org/files/ENCFF153QVS/@@download/ENCFF153QVS.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF308ISM bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF187NWS, ENCFF508HCX, ENCFF987SJL 6708986 ENCODE Processing Pipeline a0b560d9262b1a6d9aa464957703bd79 https://www.encodeproject.org/files/ENCFF308ISM/@@download/ENCFF308ISM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF248QFF bed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF308ISM, ENCFF670DLM, ENCFF689WPU 1213545 ENCODE Processing Pipeline f32fa41421aa72103e62f7a02ec79e44 https://www.encodeproject.org/files/ENCFF248QFF/@@download/ENCFF248QFF.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF238SAO bigWig fold change over control ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF187NWS, ENCFF508HCX, ENCFF987SJL 917947329 ENCODE Processing Pipeline 971075bf1ee14a8ddc3b7fb90465ae2f https://www.encodeproject.org/files/ENCFF238SAO/@@download/ENCFF238SAO.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF055DJP bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF308ISM 13008645 ENCODE Processing Pipeline 5c13603eea68a33d25c51a1ecba3dbb9 https://www.encodeproject.org/files/ENCFF055DJP/@@download/ENCFF055DJP.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF689WPU bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 6167189 ENCODE Processing Pipeline 73e8fd857d18c96a2d5ac75e326a95fb https://www.encodeproject.org/files/ENCFF689WPU/@@download/ENCFF689WPU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF381XGD bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF670DLM 12878507 ENCODE Processing Pipeline c2aece7c8094d4bcd3f71019680b617a https://www.encodeproject.org/files/ENCFF381XGD/@@download/ENCFF381XGD.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF157CYE bigBed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF689WPU 12652895 ENCODE Processing Pipeline bbcf8a31fa0c879ac68927c89f7dedf3 https://www.encodeproject.org/files/ENCFF157CYE/@@download/ENCFF157CYE.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF670DLM bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 6389708 ENCODE Processing Pipeline 72b8ad68ef98cdec0a11f280ae041ddc https://www.encodeproject.org/files/ENCFF670DLM/@@download/ENCFF670DLM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF458CFK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF147DQK 2000804 ENCODE Processing Pipeline bed22a4778da86de969e60fce3457a91 https://www.encodeproject.org/files/ENCFF458CFK/@@download/ENCFF458CFK.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF782WBX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF248QFF 2208232 ENCODE Processing Pipeline 208ab5c5a7a5720f71bb01ddd0171a63 https://www.encodeproject.org/files/ENCFF782WBX/@@download/ENCFF782WBX.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF147DQK bed narrowPeak conservative idr thresholded peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF308ISM, ENCFF670DLM, ENCFF689WPU 1067367 ENCODE Processing Pipeline bed2c322ce905180a0ff3dc14e658782 https://www.encodeproject.org/files/ENCFF147DQK/@@download/ENCFF147DQK.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000WLR bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WMC 667635870 Michael Snyder, Stanford b4a24d8e4ea7a478df188c88b18bc977 https://www.encodeproject.org/files/ENCFF000WLR/@@download/ENCFF000WLR.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLS bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WMB 531429343 Michael Snyder, Stanford 081316109f3674cac1afcefe3c50320f https://www.encodeproject.org/files/ENCFF000WLS/@@download/ENCFF000WLS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLT bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WLY 244183527 Michael Snyder, Stanford 19731bf53a1ac75655641cea26c65172 https://www.encodeproject.org/files/ENCFF000WLT/@@download/ENCFF000WLT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLU bigBed narrowPeak peaks ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGE 739097 Michael Snyder, Stanford 588df534f8f8ba46a75bbb9bd43c7179 https://www.encodeproject.org/files/ENCFF000WLU/@@download/ENCFF000WLU.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLV bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WML 1058509363 Michael Snyder, Stanford f54aa6773ff20c4a93eb9409e50f74f1 https://www.encodeproject.org/files/ENCFF000WLV/@@download/ENCFF000WLV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLY fastq reads ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 199430210 Michael Snyder, Stanford 52f01b797094cc6c5f7ebe9853c310a2 https://www.encodeproject.org/files/ENCFF000WLY/@@download/ENCFF000WLY.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WLZ bigWig signal ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 413067640 Michael Snyder, Stanford 916984b318fcf13a305db592b0a68919 https://www.encodeproject.org/files/ENCFF000WLZ/@@download/ENCFF000WLZ.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WMB fastq reads ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 453254155 Michael Snyder, Stanford b43b41b049753d687d6ad4f0a3556a7e https://www.encodeproject.org/files/ENCFF000WMB/@@download/ENCFF000WMB.fastq.gz Illumina Genome Analyzer /files/ENCFF000WLC/ released biological replicates with identical biosample insufficient read length ENCFF000WMC fastq reads ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 525955668 Michael Snyder, Stanford 36679d52ff6424d0b95cdedee4446cf6 https://www.encodeproject.org/files/ENCFF000WMC/@@download/ENCFF000WMC.fastq.gz Illumina Genome Analyzer /files/ENCFF000WLF/ released biological replicates with identical biosample insufficient read length ENCFF000WML fastq reads ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 1 28 single-ended 852730313 Michael Snyder, Stanford 8c7ff3d7154224392a83693a0ea8e9d2 https://www.encodeproject.org/files/ENCFF000WML/@@download/ENCFF000WML.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VGE bed narrowPeak peaks ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 330705 Michael Snyder, Stanford a1f5cc5f36809497e6b78c08c4972953 https://www.encodeproject.org/files/ENCFF001VGE/@@download/ENCFF001VGE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CQG bed narrowPeak optimal idr thresholded peaks ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 463379 ENCODE Consortium Analysis Working Group 3aa8d8c69bc7d5c0c1479ad2b8f0a4ed https://www.encodeproject.org/files/ENCFF002CQG/@@download/ENCFF002CQG.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF629NZJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQG 1290274 ENCODE Consortium 1ea6aeb8a72120773c079ae4e1c33aa8 https://www.encodeproject.org/files/ENCFF629NZJ/@@download/ENCFF629NZJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF012WDS fastq reads ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF347JRV 2541352487 Michael Snyder, Stanford e24484efd84181f24bfbea9efb9455cb SRA:SRR6213260 https://www.encodeproject.org/files/ENCFF012WDS/@@download/ENCFF012WDS.fastq.gz Illumina HiSeq 4000 /files/ENCFF047UFK/ released antibody characterized with exemption ENCFF347JRV fastq reads ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF012WDS 2891257355 Michael Snyder, Stanford 773951eed5dbadd4ded95297edce00fa SRA:SRR6213260 https://www.encodeproject.org/files/ENCFF347JRV/@@download/ENCFF347JRV.fastq.gz Illumina HiSeq 4000 /files/ENCFF792LBY/ released antibody characterized with exemption ENCFF593ICE bam unfiltered alignments ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF012WDS, ENCFF347JRV, ENCFF807MUK 5347101798 ENCODE Processing Pipeline dfadda05b003180f507db13522b5f4f6 https://www.encodeproject.org/files/ENCFF593ICE/@@download/ENCFF593ICE.bam hg19 released antibody characterized with exemption ENCFF213CVR bam alignments ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF012WDS, ENCFF347JRV, ENCFF807MUK 4327450521 ENCODE Processing Pipeline 89e756f10f2011236b7d83c614188c19 https://www.encodeproject.org/files/ENCFF213CVR/@@download/ENCFF213CVR.bam hg19 released antibody characterized with exemption ENCFF687GIG bam unfiltered alignments ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF012WDS, ENCFF347JRV, ENCFF643CGH 5358439261 ENCODE Processing Pipeline 5c9e9a81970bb684e3814a66bc3cefdb https://www.encodeproject.org/files/ENCFF687GIG/@@download/ENCFF687GIG.bam GRCh38 released antibody characterized with exemption ENCFF502VCR bam alignments ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF012WDS, ENCFF347JRV, ENCFF643CGH 4335296548 ENCODE Processing Pipeline 04d916eb7143ec8317f503a4dc1519b7 https://www.encodeproject.org/files/ENCFF502VCR/@@download/ENCFF502VCR.bam GRCh38 released antibody characterized with exemption ENCFF720KXF bigWig signal p-value ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF213CVR, ENCFF751PAR 1286318386 ENCODE Processing Pipeline 7472985fcfe93e4f776a9b5ceb9f225b https://www.encodeproject.org/files/ENCFF720KXF/@@download/ENCFF720KXF.bigWig hg19 released antibody characterized with exemption ENCFF418MEF bigWig fold change over control ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF213CVR, ENCFF751PAR 1348729106 ENCODE Processing Pipeline dcddcf54a8d6c848a6002b35014af38e https://www.encodeproject.org/files/ENCFF418MEF/@@download/ENCFF418MEF.bigWig hg19 released antibody characterized with exemption ENCFF231EGS bigBed narrowPeak peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF743WCA 11319298 ENCODE Processing Pipeline ef27e147032bde202da5e7882db12c8b https://www.encodeproject.org/files/ENCFF231EGS/@@download/ENCFF231EGS.bigBed hg19 released antibody characterized with exemption ENCFF830LAS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF368ROI 141435 ENCODE Processing Pipeline b30735042b44b9edba2b90237cf20275 https://www.encodeproject.org/files/ENCFF830LAS/@@download/ENCFF830LAS.bigBed hg19 released antibody characterized with exemption ENCFF743WCA bed narrowPeak peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF213CVR, ENCFF751PAR 5979879 ENCODE Processing Pipeline f270b52e7061bd994a5b7c4278f228a5 https://www.encodeproject.org/files/ENCFF743WCA/@@download/ENCFF743WCA.bed.gz hg19 released antibody characterized with exemption ENCFF368ROI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF743WCA 55534 ENCODE Processing Pipeline 8cf19dabcbf4d3dee68222380298cc9c https://www.encodeproject.org/files/ENCFF368ROI/@@download/ENCFF368ROI.bed.gz hg19 released antibody characterized with exemption ENCFF307EBE bigWig signal p-value ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF502VCR, ENCFF519AHQ 1289932539 ENCODE Processing Pipeline bd22f05a554e4ffd83b6d682cc929172 https://www.encodeproject.org/files/ENCFF307EBE/@@download/ENCFF307EBE.bigWig GRCh38 released antibody characterized with exemption ENCFF310WCC bigWig fold change over control ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF502VCR, ENCFF519AHQ 1362808528 ENCODE Processing Pipeline 40173274775290a31b9ebd46df5e0f2a https://www.encodeproject.org/files/ENCFF310WCC/@@download/ENCFF310WCC.bigWig GRCh38 released antibody characterized with exemption ENCFF834DID bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF846ZOS 56788 ENCODE Processing Pipeline 5f9d2e2a073f8f85a5c80dcf870669c4 https://www.encodeproject.org/files/ENCFF834DID/@@download/ENCFF834DID.bed.gz GRCh38 released antibody characterized with exemption ENCFF846ZOS bed narrowPeak peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF502VCR, ENCFF519AHQ 5981709 ENCODE Processing Pipeline b7d1f323666176a4c75b8a6f372b0f46 https://www.encodeproject.org/files/ENCFF846ZOS/@@download/ENCFF846ZOS.bed.gz GRCh38 released antibody characterized with exemption ENCFF231MNB bigBed narrowPeak peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF846ZOS 11336173 ENCODE Processing Pipeline 9ee6dafdb99e032b22941c940c7d612f https://www.encodeproject.org/files/ENCFF231MNB/@@download/ENCFF231MNB.bigBed GRCh38 released antibody characterized with exemption ENCFF138RTB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF834DID 145808 ENCODE Processing Pipeline 6e3efaffb9a714400dd6bf5de31dc4db https://www.encodeproject.org/files/ENCFF138RTB/@@download/ENCFF138RTB.bigBed GRCh38 released antibody characterized with exemption ENCFF000QKZ bam alignments ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QLO 1684306415 Richard Myers, HAIB 7f18e56ff08b1a43caac9c6172e420e9 https://www.encodeproject.org/files/ENCFF000QKZ/@@download/ENCFF000QKZ.bam hg19 released biological replicates with identical biosample ENCFF000QLA bigBed broadPeak peaks ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMJ 857825 Richard Myers, HAIB 4edd399341278e780c38e4b99fb4c0b8 https://www.encodeproject.org/files/ENCFF000QLA/@@download/ENCFF000QLA.bigBed hg19 released biological replicates with identical biosample ENCFF000QLB bigBed broadPeak peaks ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMK 471101 Richard Myers, HAIB db289cb8a490dc168990276259af4141 https://www.encodeproject.org/files/ENCFF000QLB/@@download/ENCFF000QLB.bigBed hg19 released biological replicates with identical biosample ENCFF000QLD bam alignments ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QLL 838549157 Richard Myers, HAIB c33df82aeb8a72962b144091b736a5c3 https://www.encodeproject.org/files/ENCFF000QLD/@@download/ENCFF000QLD.bam hg19 released biological replicates with identical biosample ENCFF000QLE bigWig raw signal ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 211441494 Richard Myers, HAIB 745730abf6376b7416f980c5fabc25d5 https://www.encodeproject.org/files/ENCFF000QLE/@@download/ENCFF000QLE.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QLF bigWig raw signal ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 104036175 Richard Myers, HAIB 884a7f3fb5aaa4367d747745d4fbbcb2 https://www.encodeproject.org/files/ENCFF000QLF/@@download/ENCFF000QLF.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QLL fastq reads ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 854592080 Richard Myers, HAIB 47ddea6a7631bec072b5b1fad8e6639d https://www.encodeproject.org/files/ENCFF000QLL/@@download/ENCFF000QLL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF000QLO fastq reads ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1749583291 Richard Myers, HAIB f1f787b077bd492359d33305a593d3c4 https://www.encodeproject.org/files/ENCFF000QLO/@@download/ENCFF000QLO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMJ bed broadPeak peaks ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 522638 Richard Myers, HAIB 54363076d36097ca407ca958584dc980 https://www.encodeproject.org/files/ENCFF001UMJ/@@download/ENCFF001UMJ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UMK bed broadPeak peaks ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 238928 Richard Myers, HAIB 96732352ef6af705ebf03eee07ffd484 https://www.encodeproject.org/files/ENCFF001UMK/@@download/ENCFF001UMK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF149EMK bam unfiltered alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 100 ENCFF034WFD, ENCFF183THJ, ENCFF807MUK 5240131473 ENCODE Processing Pipeline 05b2cc261aed6e46d629883527764ab7 https://www.encodeproject.org/files/ENCFF149EMK/@@download/ENCFF149EMK.bam hg19 released missing genetic modification characterization ENCFF652ZJJ bam unfiltered alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 100 ENCFF137GVE, ENCFF807MUK, ENCFF991EAW 5221978490 ENCODE Processing Pipeline 7ddc904abd90810caa217aef51cbcddd https://www.encodeproject.org/files/ENCFF652ZJJ/@@download/ENCFF652ZJJ.bam hg19 released missing genetic modification characterization ENCFF034WFD fastq reads ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF183THJ 2365889194 Michael Snyder, Stanford a04d2454bfff9baa75d08cc0e0f79f91 SRA:SRR5112317 https://www.encodeproject.org/files/ENCFF034WFD/@@download/ENCFF034WFD.fastq.gz Illumina HiSeq 2000 /files/ENCFF614IRS/ released missing genetic modification characterization ENCFF183THJ fastq reads ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF034WFD 2427136669 Michael Snyder, Stanford a84edbbbfbbed2d71044da378de3e5d3 SRA:SRR5112317 https://www.encodeproject.org/files/ENCFF183THJ/@@download/ENCFF183THJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF817GNU/ released missing genetic modification characterization ENCFF991EAW fastq reads ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF137GVE 2330103678 Michael Snyder, Stanford dcf59952943d96536175822a0ba71904 SRA:SRR5112318 https://www.encodeproject.org/files/ENCFF991EAW/@@download/ENCFF991EAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF817GNU/ released missing genetic modification characterization ENCFF137GVE fastq reads ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF991EAW 2394023937 Michael Snyder, Stanford 04452eaaff844876057d19cab050aee5 SRA:SRR5112318 https://www.encodeproject.org/files/ENCFF137GVE/@@download/ENCFF137GVE.fastq.gz Illumina HiSeq 2000 /files/ENCFF614IRS/ released missing genetic modification characterization ENCFF090MZL bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 100 ENCFF034WFD, ENCFF183THJ, ENCFF807MUK 4344310165 ENCODE Processing Pipeline ee423e3350dfab55522c84d8e4e86479 https://www.encodeproject.org/files/ENCFF090MZL/@@download/ENCFF090MZL.bam hg19 released missing genetic modification characterization ENCFF572JRO bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 100 ENCFF137GVE, ENCFF807MUK, ENCFF991EAW 4142716252 ENCODE Processing Pipeline 2909a498bee2c1df6acc619092ff8853 https://www.encodeproject.org/files/ENCFF572JRO/@@download/ENCFF572JRO.bam hg19 released missing genetic modification characterization ENCFF745VYG bigWig signal p-value ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF090MZL, ENCFF472AKN 1008473777 ENCODE Processing Pipeline e3e8f1dbd78a2bb2b74decdf8536a5ca https://www.encodeproject.org/files/ENCFF745VYG/@@download/ENCFF745VYG.bigWig hg19 released missing genetic modification characterization ENCFF190RLO bigWig fold change over control ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF090MZL, ENCFF472AKN 975787364 ENCODE Processing Pipeline 0559332e500b5d6c5a7a6b1d3126dbd8 https://www.encodeproject.org/files/ENCFF190RLO/@@download/ENCFF190RLO.bigWig hg19 released missing genetic modification characterization ENCFF368NNC bam unfiltered alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 100 ENCFF034WFD, ENCFF183THJ, ENCFF643CGH 5247376729 ENCODE Processing Pipeline 2f4e277c39b9539eff25d9ba71b11238 https://www.encodeproject.org/files/ENCFF368NNC/@@download/ENCFF368NNC.bam GRCh38 released missing genetic modification characterization ENCFF044WSQ bam unfiltered alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 100 ENCFF137GVE, ENCFF643CGH, ENCFF991EAW 5229871892 ENCODE Processing Pipeline f084bc39401341a10532c8cd1f8c5bb2 https://www.encodeproject.org/files/ENCFF044WSQ/@@download/ENCFF044WSQ.bam GRCh38 released missing genetic modification characterization ENCFF623MQU bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 100 ENCFF137GVE, ENCFF643CGH, ENCFF991EAW 4144294443 ENCODE Processing Pipeline 69cf75918f12f449c661a24ac8ba0892 https://www.encodeproject.org/files/ENCFF623MQU/@@download/ENCFF623MQU.bam GRCh38 released missing genetic modification characterization ENCFF634KQT bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 100 ENCFF034WFD, ENCFF183THJ, ENCFF643CGH 4346253526 ENCODE Processing Pipeline ecf1f51e364720f75070c9b72ee20e3c https://www.encodeproject.org/files/ENCFF634KQT/@@download/ENCFF634KQT.bam GRCh38 released missing genetic modification characterization ENCFF532VMS bigWig signal p-value ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF634KQT, ENCFF647SZO 1010026021 ENCODE Processing Pipeline 43068c0c149e9cebd7641ec110fafc11 https://www.encodeproject.org/files/ENCFF532VMS/@@download/ENCFF532VMS.bigWig GRCh38 released missing genetic modification characterization ENCFF914VEC bigWig signal p-value ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF623MQU, ENCFF647SZO 866302283 ENCODE Processing Pipeline 96c2c053d6bf04ede5224b3bb831fffb https://www.encodeproject.org/files/ENCFF914VEC/@@download/ENCFF914VEC.bigWig GRCh38 released missing genetic modification characterization ENCFF614JXZ bigWig signal p-value ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF623MQU, ENCFF634KQT, ENCFF647SZO 971911611 ENCODE Processing Pipeline 391984d64743249667d7c989ae4a87e4 https://www.encodeproject.org/files/ENCFF614JXZ/@@download/ENCFF614JXZ.bigWig GRCh38 released missing genetic modification characterization ENCFF749SZE bigWig fold change over control ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF634KQT, ENCFF647SZO 981141571 ENCODE Processing Pipeline 9daa9de4baf7a0bd9b3c7dec7e2f5365 https://www.encodeproject.org/files/ENCFF749SZE/@@download/ENCFF749SZE.bigWig GRCh38 released missing genetic modification characterization ENCFF719UDU bigWig fold change over control ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF623MQU, ENCFF647SZO 905157845 ENCODE Processing Pipeline 8ac16a9705e2b8a7dfbc9cbaa387c70f https://www.encodeproject.org/files/ENCFF719UDU/@@download/ENCFF719UDU.bigWig GRCh38 released missing genetic modification characterization ENCFF340JFR bigWig fold change over control ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF623MQU, ENCFF634KQT, ENCFF647SZO 1483666588 ENCODE Processing Pipeline b530fa1e39e570ac8e6358581d9e048a https://www.encodeproject.org/files/ENCFF340JFR/@@download/ENCFF340JFR.bigWig GRCh38 released missing genetic modification characterization ENCFF945CSK bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF634KQT, ENCFF647SZO 6038101 ENCODE Processing Pipeline 69fccc2938f61aece15908d669cb1b01 https://www.encodeproject.org/files/ENCFF945CSK/@@download/ENCFF945CSK.bed.gz GRCh38 released missing genetic modification characterization ENCFF688SPJ bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF623MQU, ENCFF647SZO 5966749 ENCODE Processing Pipeline e7ccab97c6560c425c2d6487a2b9d0c9 https://www.encodeproject.org/files/ENCFF688SPJ/@@download/ENCFF688SPJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF754RLJ bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF623MQU, ENCFF634KQT, ENCFF647SZO 6910152 ENCODE Processing Pipeline 7a8a84499bc4687e33636cc2591dae5a https://www.encodeproject.org/files/ENCFF754RLJ/@@download/ENCFF754RLJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF436BUJ bigBed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF945CSK 11271237 ENCODE Processing Pipeline a951840b2f88334214ee48fa2aff12ca https://www.encodeproject.org/files/ENCFF436BUJ/@@download/ENCFF436BUJ.bigBed GRCh38 released missing genetic modification characterization ENCFF794XQA bigBed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF688SPJ 11178635 ENCODE Processing Pipeline 98825ddb99cc4958a67a55cb14bcbd3a https://www.encodeproject.org/files/ENCFF794XQA/@@download/ENCFF794XQA.bigBed GRCh38 released missing genetic modification characterization ENCFF887VJU bigBed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF754RLJ 11028929 ENCODE Processing Pipeline 3b5569cd8201f234f922f4879d683ba8 https://www.encodeproject.org/files/ENCFF887VJU/@@download/ENCFF887VJU.bigBed GRCh38 released missing genetic modification characterization ENCFF166MJJ bed narrowPeak conservative idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF688SPJ, ENCFF754RLJ, ENCFF945CSK 132744 ENCODE Processing Pipeline 0999afd2ed37c5ba1e7f70ff49716588 https://www.encodeproject.org/files/ENCFF166MJJ/@@download/ENCFF166MJJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF915HLY bigBed narrowPeak conservative idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF166MJJ 302600 ENCODE Processing Pipeline c3566441013270a5350da3f238de9e23 https://www.encodeproject.org/files/ENCFF915HLY/@@download/ENCFF915HLY.bigBed GRCh38 released missing genetic modification characterization ENCFF863WCN bed narrowPeak optimal idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF688SPJ, ENCFF754RLJ, ENCFF945CSK 172340 ENCODE Processing Pipeline a10e035162770658df2a39f20f34dc49 https://www.encodeproject.org/files/ENCFF863WCN/@@download/ENCFF863WCN.bed.gz GRCh38 released missing genetic modification characterization ENCFF333FZO bigBed narrowPeak optimal idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF863WCN 360587 ENCODE Processing Pipeline 29106de72eeb306d4d302afc6b68e32c https://www.encodeproject.org/files/ENCFF333FZO/@@download/ENCFF333FZO.bigBed GRCh38 released missing genetic modification characterization ENCFF253CQK bigBed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF437EBC 11261850 ENCODE Processing Pipeline ed592a3c57b7ffe626f2c2576115bc36 https://www.encodeproject.org/files/ENCFF253CQK/@@download/ENCFF253CQK.bigBed hg19 released missing genetic modification characterization ENCFF396UDO bigBed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF878TRQ 11157019 ENCODE Processing Pipeline 167a4fe6bbcd09648bbc9610bef63f3a https://www.encodeproject.org/files/ENCFF396UDO/@@download/ENCFF396UDO.bigBed hg19 released missing genetic modification characterization ENCFF579TRW bigBed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF672YBV 13157265 ENCODE Processing Pipeline 68388ec20d3fb56bb493dd6a457c8b6d https://www.encodeproject.org/files/ENCFF579TRW/@@download/ENCFF579TRW.bigBed hg19 released missing genetic modification characterization ENCFF437EBC bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF090MZL, ENCFF472AKN 6044717 ENCODE Processing Pipeline 79c1ec872125b7c061e60ab15a3e95fc https://www.encodeproject.org/files/ENCFF437EBC/@@download/ENCFF437EBC.bed.gz hg19 released missing genetic modification characterization ENCFF672YBV bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF090MZL, ENCFF472AKN, ENCFF572JRO 6911844 ENCODE Processing Pipeline e2e7d31e4b98fccede99c91efacc1ffc https://www.encodeproject.org/files/ENCFF672YBV/@@download/ENCFF672YBV.bed.gz hg19 released missing genetic modification characterization ENCFF814QYE bigBed narrowPeak optimal idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF196DHR 365430 ENCODE Processing Pipeline c04d26f13a1ec6f04c1958a5d98d60e4 https://www.encodeproject.org/files/ENCFF814QYE/@@download/ENCFF814QYE.bigBed hg19 released missing genetic modification characterization ENCFF054TAX bigWig fold change over control ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF090MZL, ENCFF472AKN, ENCFF572JRO 1484497341 ENCODE Processing Pipeline c212ec4ed5408b60ba30823493f14b6c https://www.encodeproject.org/files/ENCFF054TAX/@@download/ENCFF054TAX.bigWig hg19 released missing genetic modification characterization ENCFF878TRQ bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF472AKN, ENCFF572JRO 5963655 ENCODE Processing Pipeline 9d8706b5041da11aef4b0eed9722590d https://www.encodeproject.org/files/ENCFF878TRQ/@@download/ENCFF878TRQ.bed.gz hg19 released missing genetic modification characterization ENCFF850QMO bed narrowPeak conservative idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF437EBC, ENCFF672YBV, ENCFF878TRQ 136496 ENCODE Processing Pipeline 7f00bcb2cb9f6253e167186bb42edc00 https://www.encodeproject.org/files/ENCFF850QMO/@@download/ENCFF850QMO.bed.gz hg19 released missing genetic modification characterization ENCFF015XWG bigBed narrowPeak conservative idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF850QMO 303764 ENCODE Processing Pipeline 8e107fba4ea371b00813de3e1990792d https://www.encodeproject.org/files/ENCFF015XWG/@@download/ENCFF015XWG.bigBed hg19 released missing genetic modification characterization ENCFF723YSH bigWig signal p-value ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF472AKN, ENCFF572JRO 875277327 ENCODE Processing Pipeline 001235c4dad85d2af8b9c0e60db8394e https://www.encodeproject.org/files/ENCFF723YSH/@@download/ENCFF723YSH.bigWig hg19 released missing genetic modification characterization ENCFF610XDZ bigWig signal p-value ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF090MZL, ENCFF472AKN, ENCFF572JRO 970563546 ENCODE Processing Pipeline 980d8a29699a465d9f788edf3def71ca https://www.encodeproject.org/files/ENCFF610XDZ/@@download/ENCFF610XDZ.bigWig hg19 released missing genetic modification characterization ENCFF196DHR bed narrowPeak optimal idr thresholded peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF437EBC, ENCFF672YBV, ENCFF878TRQ 178677 ENCODE Processing Pipeline d604bcfbecd8c71778b4f1843c67dfd9 https://www.encodeproject.org/files/ENCFF196DHR/@@download/ENCFF196DHR.bed.gz hg19 released missing genetic modification characterization ENCFF284QAE bigWig fold change over control ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF472AKN, ENCFF572JRO 921347022 ENCODE Processing Pipeline 37f70cbedf856b4e4665a87669cdd7b5 https://www.encodeproject.org/files/ENCFF284QAE/@@download/ENCFF284QAE.bigWig hg19 released missing genetic modification characterization ENCFF000XAZ bam alignments ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBK 326010695 Sherman Weissman, Yale e1b30a621a0bd62f31f6923bc00a69fd https://www.encodeproject.org/files/ENCFF000XAZ/@@download/ENCFF000XAZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XBA bam alignments ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBL 336108432 Sherman Weissman, Yale 5f0c3a0c6c6e2a4888203a02d617c6b2 https://www.encodeproject.org/files/ENCFF000XBA/@@download/ENCFF000XBA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XBB bam alignments ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XBJ 310777655 Sherman Weissman, Yale 95045fa95b982720382139f6214affc3 https://www.encodeproject.org/files/ENCFF000XBB/@@download/ENCFF000XBB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XBC bigBed narrowPeak peaks ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHY 73484 Sherman Weissman, Yale 1b2bc1e27f07874efb3406f916b056d7 https://www.encodeproject.org/files/ENCFF000XBC/@@download/ENCFF000XBC.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XBF bigWig signal ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 383448825 Sherman Weissman, Yale eecb55a330517a5fdd2db77d598f84df https://www.encodeproject.org/files/ENCFF000XBF/@@download/ENCFF000XBF.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XBJ fastq reads ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 237751318 Sherman Weissman, Yale ca0c104a9e437188c7616f6ebf36002f https://www.encodeproject.org/files/ENCFF000XBJ/@@download/ENCFF000XBJ.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XBK fastq reads ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 250521370 Sherman Weissman, Yale fa4dd4c08091e59f92ff302db3451116 https://www.encodeproject.org/files/ENCFF000XBK/@@download/ENCFF000XBK.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XBL fastq reads ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 258193443 Sherman Weissman, Yale d23e1f06db21be8a3a440093ecdfb8a6 https://www.encodeproject.org/files/ENCFF000XBL/@@download/ENCFF000XBL.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VHY bed narrowPeak peaks ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1814 Sherman Weissman, Yale 97547d5e7829b44f301486f069ff2154 https://www.encodeproject.org/files/ENCFF001VHY/@@download/ENCFF001VHY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CRZ bed narrowPeak optimal idr thresholded peaks ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 30108 ENCODE Consortium Analysis Working Group 17b2602908fb2488bd9e2b046d59701e https://www.encodeproject.org/files/ENCFF002CRZ/@@download/ENCFF002CRZ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF026LYM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRZ 129012 ENCODE Consortium 643ba3a61e7174b881fd356992bf82b6 https://www.encodeproject.org/files/ENCFF026LYM/@@download/ENCFF026LYM.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000AVI bam alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 ENCFF000AVS 762645514 Bradley Bernstein, Broad 16fe2d5dbea1b6c98eda3faeeee23827 https://www.encodeproject.org/files/ENCFF000AVI/@@download/ENCFF000AVI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AVJ bigBed broadPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF001SUT 3313764 Bradley Bernstein, Broad d9f8f0f208f71a3aa309a7de0c99f924 https://www.encodeproject.org/files/ENCFF000AVJ/@@download/ENCFF000AVJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AVK bam alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 2 ENCFF000AVU 654421832 Bradley Bernstein, Broad 39b52588e5ec6c83f73ce0cc4c9123c0 https://www.encodeproject.org/files/ENCFF000AVK/@@download/ENCFF000AVK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AVN bigWig signal ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000AVI, ENCFF000AVK 420738921 Bradley Bernstein, Broad 49f05309f912a7a4be5711bfc26104f8 https://www.encodeproject.org/files/ENCFF000AVN/@@download/ENCFF000AVN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AVS fastq reads ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 914153035 Bradley Bernstein, Broad e0d404ca03bc27d0ee5c3f318c03baaf https://www.encodeproject.org/files/ENCFF000AVS/@@download/ENCFF000AVS.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AVU fastq reads ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 2 36 single-ended 649058038 Bradley Bernstein, Broad 0daba3dd0875659f4bbc88bd4f664776 https://www.encodeproject.org/files/ENCFF000AVU/@@download/ENCFF000AVU.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001SUT bed broadPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000AVI, ENCFF000AVK 1692159 Bradley Bernstein, Broad b4d9d714675ab19658a4dd70c293983e https://www.encodeproject.org/files/ENCFF001SUT/@@download/ENCFF001SUT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF002CDS bed narrowPeak optimal idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000AVI, ENCFF000AVK 1381027 ENCODE Consortium Analysis Working Group 5042afb91f822356fa7b9d16c6d94e94 https://www.encodeproject.org/files/ENCFF002CDS/@@download/ENCFF002CDS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF270CTV bigBed narrowPeak optimal idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF002CDS 2751375 ENCODE Consortium 191f565b92a7cf2c134ef4ba088e2b5e https://www.encodeproject.org/files/ENCFF270CTV/@@download/ENCFF270CTV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF740VTK bam alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000AVS, ENCFF000AVU, ENCFF643CGH 978666236 ENCODE Processing Pipeline b3e239f836329cc50e6ee1ab2a612988 https://www.encodeproject.org/files/ENCFF740VTK/@@download/ENCFF740VTK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF226JMR bam unfiltered alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000AVS, ENCFF000AVU, ENCFF807MUK 1943366865 ENCODE Processing Pipeline 5ccd603f770501a782fb3ad133ebe600 https://www.encodeproject.org/files/ENCFF226JMR/@@download/ENCFF226JMR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF391MCN bam alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000AVS, ENCFF000AVU, ENCFF807MUK 978901500 ENCODE Processing Pipeline 4461965524dd50ebbf18e3fcaefb2560 https://www.encodeproject.org/files/ENCFF391MCN/@@download/ENCFF391MCN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF185MIJ bam unfiltered alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000AVS, ENCFF000AVU, ENCFF643CGH 1949968205 ENCODE Processing Pipeline 2a2166d1ac37250e119a197450ccbd45 https://www.encodeproject.org/files/ENCFF185MIJ/@@download/ENCFF185MIJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF344RYC bed narrowPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF391MCN, ENCFF727XHW 4828262 ENCODE Processing Pipeline f462d7d540b5e27927b91e95e5f6803b https://www.encodeproject.org/files/ENCFF344RYC/@@download/ENCFF344RYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF093CSL bigWig fold change over control ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF391MCN, ENCFF727XHW 414623419 ENCODE Processing Pipeline 3edfd0e390c0e67f11457e34b64effe4 https://www.encodeproject.org/files/ENCFF093CSL/@@download/ENCFF093CSL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF225MAO bigWig signal p-value ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF391MCN, ENCFF727XHW 494554771 ENCODE Processing Pipeline 75426d563f20d0ce6b238d3d42bc8cd7 https://www.encodeproject.org/files/ENCFF225MAO/@@download/ENCFF225MAO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF599LWA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF093VEE 1774840 ENCODE Processing Pipeline 3dddd9d1e20e31351992aabffb01f42f https://www.encodeproject.org/files/ENCFF599LWA/@@download/ENCFF599LWA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF520THR bigWig fold change over control ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF064DDT, ENCFF740VTK 414796853 ENCODE Processing Pipeline 77df85fa613bf123093f4cdf08d64916 https://www.encodeproject.org/files/ENCFF520THR/@@download/ENCFF520THR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF654UBN bigWig signal p-value ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF064DDT, ENCFF740VTK 513046451 ENCODE Processing Pipeline 1a77a6f888d778d866392a805c077afa https://www.encodeproject.org/files/ENCFF654UBN/@@download/ENCFF654UBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF931VSM bed narrowPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF064DDT, ENCFF740VTK 4776088 ENCODE Processing Pipeline cec1640451c51393a896a0037614146f https://www.encodeproject.org/files/ENCFF931VSM/@@download/ENCFF931VSM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF022PLD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF368LWM 1758042 ENCODE Processing Pipeline 5e25a86dbb3103fba2af4eb10a30eb1a https://www.encodeproject.org/files/ENCFF022PLD/@@download/ENCFF022PLD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF054WSR bigBed narrowPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF344RYC 11352930 ENCODE Processing Pipeline 70dea7ef569473eeada9a7ce898bbc0a https://www.encodeproject.org/files/ENCFF054WSR/@@download/ENCFF054WSR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF093VEE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF001TDO, ENCFF344RYC 1055004 ENCODE Processing Pipeline 4bf159bd7c7771fc8890a7a55a989001 https://www.encodeproject.org/files/ENCFF093VEE/@@download/ENCFF093VEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF484MVE bigBed narrowPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF931VSM 11274462 ENCODE Processing Pipeline 110a540529a2405f82090a9753afca50 https://www.encodeproject.org/files/ENCFF484MVE/@@download/ENCFF484MVE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF368LWM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF419RSJ, ENCFF931VSM 1048800 ENCODE Processing Pipeline 0743ade317f5d305d60ad910f9ff2ab2 https://www.encodeproject.org/files/ENCFF368LWM/@@download/ENCFF368LWM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000XHA bam alignments ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XHD 533995909 Michael Snyder, Stanford e1124ed94cf7267c042be0fd3d238224 https://www.encodeproject.org/files/ENCFF000XHA/@@download/ENCFF000XHA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XHB bam alignments ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XHF 440209344 Michael Snyder, Stanford 73a664ee203857d22ba873e8cdac3af8 https://www.encodeproject.org/files/ENCFF000XHB/@@download/ENCFF000XHB.bam hg19 released low read length biological replicates with identical biosample ENCFF000XHC bigBed narrowPeak peaks ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VIS 2196243 Michael Snyder, Stanford 10e6fc87ed91a6d8b00b51f4c43655d0 https://www.encodeproject.org/files/ENCFF000XHC/@@download/ENCFF000XHC.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XHD fastq reads ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 983205138 Michael Snyder, Stanford e0baac46143fdc1687ef2cafeb363846 https://www.encodeproject.org/files/ENCFF000XHD/@@download/ENCFF000XHD.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XHF fastq reads ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 779177926 Michael Snyder, Stanford 8b20b6c1472315b86eed5abe9148cd62 https://www.encodeproject.org/files/ENCFF000XHF/@@download/ENCFF000XHF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XHH bigWig signal ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 366252552 Michael Snyder, Stanford cf44a5261ea077acb9a697d4fc7c17ad https://www.encodeproject.org/files/ENCFF000XHH/@@download/ENCFF000XHH.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001VIS bed narrowPeak peaks ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 901480 Michael Snyder, Stanford 3c6c97c47266298f415c6a36ef95132c https://www.encodeproject.org/files/ENCFF001VIS/@@download/ENCFF001VIS.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CSR bed narrowPeak optimal idr thresholded peaks ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 742112 ENCODE Consortium Analysis Working Group 4e2babbda793ba249e6f4ed5048b3462 https://www.encodeproject.org/files/ENCFF002CSR/@@download/ENCFF002CSR.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF443CGL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CSR 1786576 ENCODE Consortium 38b23c3190dcae088bd7ad16c8428e68 https://www.encodeproject.org/files/ENCFF443CGL/@@download/ENCFF443CGL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF123UBX bam unfiltered alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 100 ENCFF224KMR, ENCFF423ZOG, ENCFF807MUK 3939268785 ENCODE Processing Pipeline 754be64aa45f0145de2cf58b42d958ca https://www.encodeproject.org/files/ENCFF123UBX/@@download/ENCFF123UBX.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF062SVK bam unfiltered alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 100 ENCFF541TDH, ENCFF551WWR, ENCFF807MUK 4145125929 ENCODE Processing Pipeline c488d5a4d74f0829770c8ba9dcbc7f82 https://www.encodeproject.org/files/ENCFF062SVK/@@download/ENCFF062SVK.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF423ZOG fastq reads ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF224KMR 1774977922 Michael Snyder, Stanford aa74c9132ac17f94699cd7fb9ff3244e SRA:SRR5111858 https://www.encodeproject.org/files/ENCFF423ZOG/@@download/ENCFF423ZOG.fastq.gz Illumina HiSeq 2000 /files/ENCFF217VQE/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF224KMR fastq reads ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF423ZOG 1796312022 Michael Snyder, Stanford cf1617e8cdc55e7dfe77a9b9196552b6 SRA:SRR5111858 https://www.encodeproject.org/files/ENCFF224KMR/@@download/ENCFF224KMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF241ECN/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF541TDH fastq reads ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF551WWR 1942946609 Michael Snyder, Stanford a0398cde505c2e8c077ac8b441ba797e SRA:SRR5111857 https://www.encodeproject.org/files/ENCFF541TDH/@@download/ENCFF541TDH.fastq.gz Illumina HiSeq 2000 /files/ENCFF241ECN/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF551WWR fastq reads ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF541TDH 1902515789 Michael Snyder, Stanford 6ca2cac6e45396dadc96dbacc2a57078 SRA:SRR5111857 https://www.encodeproject.org/files/ENCFF551WWR/@@download/ENCFF551WWR.fastq.gz Illumina HiSeq 2000 /files/ENCFF217VQE/ released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF290VXO bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 100 ENCFF541TDH, ENCFF551WWR, ENCFF807MUK 3339905451 ENCODE Processing Pipeline f6dec8755f091f40f7c3b7e047fb3b01 https://www.encodeproject.org/files/ENCFF290VXO/@@download/ENCFF290VXO.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF311MHB bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 100 ENCFF224KMR, ENCFF423ZOG, ENCFF807MUK 3412051633 ENCODE Processing Pipeline 81f9543b40553cbcc7758c4ac04ba22d https://www.encodeproject.org/files/ENCFF311MHB/@@download/ENCFF311MHB.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF699VMO bigWig signal p-value ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF180DLN, ENCFF290VXO 642125335 ENCODE Processing Pipeline 2889ad04a1e5f994ae97287bb7b79ea8 https://www.encodeproject.org/files/ENCFF699VMO/@@download/ENCFF699VMO.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF322CTE bigWig signal p-value ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF180DLN, ENCFF311MHB 643025967 ENCODE Processing Pipeline 33e1196bc706996301679123eeee2dba https://www.encodeproject.org/files/ENCFF322CTE/@@download/ENCFF322CTE.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF802EXO bigWig signal p-value ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF180DLN, ENCFF290VXO, ENCFF311MHB 632882227 ENCODE Processing Pipeline 988e90b1ff229e1e0fbed1271de0f66e https://www.encodeproject.org/files/ENCFF802EXO/@@download/ENCFF802EXO.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF871DYS bigWig fold change over control ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF180DLN, ENCFF290VXO 701285417 ENCODE Processing Pipeline 747319f4798651b9ec548c467b95d9f3 https://www.encodeproject.org/files/ENCFF871DYS/@@download/ENCFF871DYS.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF639JPW bigWig fold change over control ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF180DLN, ENCFF311MHB 723486396 ENCODE Processing Pipeline dc18996f6c75545894128145ec6824aa https://www.encodeproject.org/files/ENCFF639JPW/@@download/ENCFF639JPW.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF129FNZ bigWig fold change over control ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF180DLN, ENCFF290VXO, ENCFF311MHB 1195099195 ENCODE Processing Pipeline db0f010af5bd4b293e5b685240a0e19c https://www.encodeproject.org/files/ENCFF129FNZ/@@download/ENCFF129FNZ.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF369YHE bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF180DLN, ENCFF311MHB 5606389 ENCODE Processing Pipeline d8cddbe81473e58340ce677c25e38cc5 https://www.encodeproject.org/files/ENCFF369YHE/@@download/ENCFF369YHE.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF510KRZ bigBed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF369YHE 11168622 ENCODE Processing Pipeline 6f3ae6e2998cbb7524bb6e7116d4d62d https://www.encodeproject.org/files/ENCFF510KRZ/@@download/ENCFF510KRZ.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF089QJI bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF180DLN, ENCFF290VXO 5435601 ENCODE Processing Pipeline 1b3771a11fba80bd23684e282119d03b https://www.encodeproject.org/files/ENCFF089QJI/@@download/ENCFF089QJI.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF922IFQ bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF180DLN, ENCFF290VXO, ENCFF311MHB 6399513 ENCODE Processing Pipeline 05e91842f81f7d1926814e2fdd3f27de https://www.encodeproject.org/files/ENCFF922IFQ/@@download/ENCFF922IFQ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF002HTW bigBed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF089QJI 11115199 ENCODE Processing Pipeline b0ac63f6dc88b2284a57a261aea0d659 https://www.encodeproject.org/files/ENCFF002HTW/@@download/ENCFF002HTW.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF343VHU bigBed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF922IFQ 13088799 ENCODE Processing Pipeline 221d2bbed053dad7ec121ab6b3ba21f9 https://www.encodeproject.org/files/ENCFF343VHU/@@download/ENCFF343VHU.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF065IPK bam unfiltered alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 100 ENCFF224KMR, ENCFF423ZOG, ENCFF643CGH 3944654315 ENCODE Processing Pipeline e5add73b2eff460ce969f25ef482f250 https://www.encodeproject.org/files/ENCFF065IPK/@@download/ENCFF065IPK.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF541OKB bam unfiltered alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 100 ENCFF541TDH, ENCFF551WWR, ENCFF643CGH 4149547801 ENCODE Processing Pipeline d9f06ae91e9a990890b21feca90c9001 https://www.encodeproject.org/files/ENCFF541OKB/@@download/ENCFF541OKB.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF448SJG bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 100 ENCFF541TDH, ENCFF551WWR, ENCFF643CGH 3341270470 ENCODE Processing Pipeline 8886dc01b43879fb148cd220715e61c8 https://www.encodeproject.org/files/ENCFF448SJG/@@download/ENCFF448SJG.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF786KLU bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 100 ENCFF224KMR, ENCFF423ZOG, ENCFF643CGH 3413407961 ENCODE Processing Pipeline a43caf2f3074e728c021861f208ea89f https://www.encodeproject.org/files/ENCFF786KLU/@@download/ENCFF786KLU.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF360WSW bigWig signal p-value ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF448SJG, ENCFF596JNR 643245354 ENCODE Processing Pipeline 7545fba71df36d90bd07a7a10ad393df https://www.encodeproject.org/files/ENCFF360WSW/@@download/ENCFF360WSW.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF019YIB bigWig signal p-value ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF596JNR, ENCFF786KLU 647689733 ENCODE Processing Pipeline 01427e4566fbc7c94a65393396e3eed2 https://www.encodeproject.org/files/ENCFF019YIB/@@download/ENCFF019YIB.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF975SOT bigWig signal p-value ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF448SJG, ENCFF596JNR, ENCFF786KLU 631040218 ENCODE Processing Pipeline cbd43f5bef7b8594e9423133298f90e6 https://www.encodeproject.org/files/ENCFF975SOT/@@download/ENCFF975SOT.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF868SYM bigWig fold change over control ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF448SJG, ENCFF596JNR 701310087 ENCODE Processing Pipeline e72910d21da286563a13bbeda52cb455 https://www.encodeproject.org/files/ENCFF868SYM/@@download/ENCFF868SYM.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF631CKI bigWig fold change over control ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF596JNR, ENCFF786KLU 738208340 ENCODE Processing Pipeline b69badfeb855d1156f363b56acd79f12 https://www.encodeproject.org/files/ENCFF631CKI/@@download/ENCFF631CKI.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF472NPM bigWig fold change over control ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF448SJG, ENCFF596JNR, ENCFF786KLU 1195949114 ENCODE Processing Pipeline bc628452a8e05b487e19523dc2c1b772 https://www.encodeproject.org/files/ENCFF472NPM/@@download/ENCFF472NPM.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF182JFB bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF448SJG, ENCFF596JNR 5252380 ENCODE Processing Pipeline f84be3398bf1e178da40f78b82a94102 https://www.encodeproject.org/files/ENCFF182JFB/@@download/ENCFF182JFB.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF602MFR bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF596JNR, ENCFF786KLU 5422295 ENCODE Processing Pipeline 1d256864c303da65abf4ffda27502b59 https://www.encodeproject.org/files/ENCFF602MFR/@@download/ENCFF602MFR.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF310BUW bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF448SJG, ENCFF596JNR, ENCFF786KLU 6289663 ENCODE Processing Pipeline 2222ab14bd61560b581b7ee4abfabdc4 https://www.encodeproject.org/files/ENCFF310BUW/@@download/ENCFF310BUW.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF264ARH bigBed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF182JFB 11075185 ENCODE Processing Pipeline fc55430b567508c9d75ff3179ab3e54d https://www.encodeproject.org/files/ENCFF264ARH/@@download/ENCFF264ARH.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF878IEG bigBed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF602MFR 11105008 ENCODE Processing Pipeline 9df8aa77331f0351ec1773a499b6a5c0 https://www.encodeproject.org/files/ENCFF878IEG/@@download/ENCFF878IEG.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF330DQY bigBed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF310BUW 13093473 ENCODE Processing Pipeline ed9ace5c117ac4a38d4c0a298a24b7c0 https://www.encodeproject.org/files/ENCFF330DQY/@@download/ENCFF330DQY.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF624ZLP bigBed narrowPeak conservative idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF088EKR 286021 ENCODE Processing Pipeline 565092d396ef625aaf5a0020d92ab9f4 https://www.encodeproject.org/files/ENCFF624ZLP/@@download/ENCFF624ZLP.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF558VAL bed narrowPeak optimal idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF182JFB, ENCFF310BUW, ENCFF419RSJ, ENCFF602MFR 157997 ENCODE Processing Pipeline e16bf2d6312c6ab45aae1c7e5f8ea231 https://www.encodeproject.org/files/ENCFF558VAL/@@download/ENCFF558VAL.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF088EKR bed narrowPeak conservative idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF182JFB, ENCFF310BUW, ENCFF419RSJ, ENCFF602MFR 122590 ENCODE Processing Pipeline ab19c6d32b36f58c887894e72e87ca3b https://www.encodeproject.org/files/ENCFF088EKR/@@download/ENCFF088EKR.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF732CUP bigBed narrowPeak optimal idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF558VAL 336588 ENCODE Processing Pipeline 494c8d418f2bbe39fc08a71464bac671 https://www.encodeproject.org/files/ENCFF732CUP/@@download/ENCFF732CUP.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF873VTX bigBed narrowPeak conservative idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF413OIG 208077 ENCODE Processing Pipeline 02fb35860d65b57aca62ab2d8d69fced https://www.encodeproject.org/files/ENCFF873VTX/@@download/ENCFF873VTX.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF265LKN bed narrowPeak optimal idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF089QJI, ENCFF369YHE, ENCFF922IFQ 128527 ENCODE Processing Pipeline 38e7c9a347317a014c942a4fb187d1c6 https://www.encodeproject.org/files/ENCFF265LKN/@@download/ENCFF265LKN.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF819SGJ bigBed narrowPeak optimal idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF265LKN 240507 ENCODE Processing Pipeline 1a91de5a4f85a1e7c0ae619de63354fe https://www.encodeproject.org/files/ENCFF819SGJ/@@download/ENCFF819SGJ.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF413OIG bed narrowPeak conservative idr thresholded peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF089QJI, ENCFF369YHE, ENCFF922IFQ 101256 ENCODE Processing Pipeline 12e85fe44ebdf827e3c7d618feee2aaf https://www.encodeproject.org/files/ENCFF413OIG/@@download/ENCFF413OIG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF000PLQ bam alignments ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PMF 1602336571 Richard Myers, HAIB 390408e7a868d785477c23fa0927ded1 https://www.encodeproject.org/files/ENCFF000PLQ/@@download/ENCFF000PLQ.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PLR bam alignments ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PMC 1004152303 Richard Myers, HAIB a5f4ba96de327ef2300af0df76de6ce3 https://www.encodeproject.org/files/ENCFF000PLR/@@download/ENCFF000PLR.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PLS bigBed broadPeak peaks ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UGU 145138 Richard Myers, HAIB c2f5bf3d6dd1d29671f798114fb88428 https://www.encodeproject.org/files/ENCFF000PLS/@@download/ENCFF000PLS.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PLT bigBed broadPeak peaks ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UGV 183973 Richard Myers, HAIB 35436b98286fd6d994b7511f16b86f09 https://www.encodeproject.org/files/ENCFF000PLT/@@download/ENCFF000PLT.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PLU bigWig raw signal ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 228660765 Richard Myers, HAIB 2b15eefce6bc36244dff917f9db5e515 https://www.encodeproject.org/files/ENCFF000PLU/@@download/ENCFF000PLU.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000PLV bigWig raw signal ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 100441182 Richard Myers, HAIB 37d275c28e1aa4b04faa716894995779 https://www.encodeproject.org/files/ENCFF000PLV/@@download/ENCFF000PLV.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PMC fastq reads ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1042508951 Richard Myers, HAIB ba3a4e505a2f4afdd5a4265ddcb31960 https://www.encodeproject.org/files/ENCFF000PMC/@@download/ENCFF000PMC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPI/ released inconsistent platforms biological replicates with identical biosample ENCFF000PMF fastq reads ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1672858680 Richard Myers, HAIB 225214e3ea75b2c8cef9e505af096c02 https://www.encodeproject.org/files/ENCFF000PMF/@@download/ENCFF000PMF.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPF/ released inconsistent platforms biological replicates with identical biosample ENCFF001UGU bed broadPeak peaks ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 1 61014 Richard Myers, HAIB 28fdacc79032fb6135b8988beca7cbef https://www.encodeproject.org/files/ENCFF001UGU/@@download/ENCFF001UGU.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UGV bed broadPeak peaks ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 1 88606 Richard Myers, HAIB c601b7970025cd870ec955c22a5ad977 https://www.encodeproject.org/files/ENCFF001UGV/@@download/ENCFF001UGV.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000RGB bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RGQ 774525907 Richard Myers, HAIB 87abd282421e6349aa121ac1fc72ebd4 https://www.encodeproject.org/files/ENCFF000RGB/@@download/ENCFF000RGB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RGC bigBed broadPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UQX 506938 Richard Myers, HAIB a62dcab21d7c63ae50f218e1cc2d83bf https://www.encodeproject.org/files/ENCFF000RGC/@@download/ENCFF000RGC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RGD bigBed broadPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UQY 640156 Richard Myers, HAIB 781145a8ff3a848bbe2f8bf0896eb0b0 https://www.encodeproject.org/files/ENCFF000RGD/@@download/ENCFF000RGD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RGE bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RGM 431056719 Richard Myers, HAIB b27615ac66b40f7a943621ab6d74bd09 https://www.encodeproject.org/files/ENCFF000RGE/@@download/ENCFF000RGE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RGG bigWig raw signal ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 19577669 Richard Myers, HAIB 7bd0343d238cd8aa883a9bf7d7683d6e https://www.encodeproject.org/files/ENCFF000RGG/@@download/ENCFF000RGG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000RGH bigWig raw signal ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 14597311 Richard Myers, HAIB cfc152b195a5e2a32624b1b3e31ae8a2 https://www.encodeproject.org/files/ENCFF000RGH/@@download/ENCFF000RGH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000RGM fastq reads ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 398295016 Richard Myers, HAIB efef124ccf0cd5f0b135a5fd5b83dc4b https://www.encodeproject.org/files/ENCFF000RGM/@@download/ENCFF000RGM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RGQ fastq reads ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 741829493 Richard Myers, HAIB 5bbd044ff53e4eb30b54e812b3143d76 https://www.encodeproject.org/files/ENCFF000RGQ/@@download/ENCFF000RGQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UQX bed broadPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 335538 Richard Myers, HAIB ef389ef002ceb2fb9226799ee14faa7e https://www.encodeproject.org/files/ENCFF001UQX/@@download/ENCFF001UQX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001UQY bed broadPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 326040 Richard Myers, HAIB 6940346b925f638590bd539e13a9221f https://www.encodeproject.org/files/ENCFF001UQY/@@download/ENCFF001UQY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CNR bed narrowPeak optimal idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 381400 ENCODE Consortium Analysis Working Group 2b841aa96ef5710fd1b227e9c8ab262d https://www.encodeproject.org/files/ENCFF002CNR/@@download/ENCFF002CNR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF527ZMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNR 760509 ENCODE Consortium 2ece21fb5267b6f15a158e17a3c3fbc0 https://www.encodeproject.org/files/ENCFF527ZMB/@@download/ENCFF527ZMB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF387RDF bam unfiltered alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGM, ENCFF643CGH 503728984 ENCODE Processing Pipeline aa62a083b853f9111bf250a24659f0a6 https://www.encodeproject.org/files/ENCFF387RDF/@@download/ENCFF387RDF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF434GLS bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGM, ENCFF643CGH 248531688 ENCODE Processing Pipeline a83ad6b8b23101355522b53211799963 https://www.encodeproject.org/files/ENCFF434GLS/@@download/ENCFF434GLS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF383FRS bam unfiltered alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGQ, ENCFF643CGH 899469826 ENCODE Processing Pipeline fd5e8416906129ed1ab103d4af207bb5 https://www.encodeproject.org/files/ENCFF383FRS/@@download/ENCFF383FRS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF982TSB bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGQ, ENCFF643CGH 393972607 ENCODE Processing Pipeline 3617b91929554d061a6e1ba51bb23a3c https://www.encodeproject.org/files/ENCFF982TSB/@@download/ENCFF982TSB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF539RIF bam unfiltered alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGM, ENCFF807MUK 502036847 ENCODE Processing Pipeline 412397c8facce54d4a6ca141266b88fd https://www.encodeproject.org/files/ENCFF539RIF/@@download/ENCFF539RIF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF096MNC bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGM, ENCFF807MUK 248722652 ENCODE Processing Pipeline c5b057e54987a9407938f3bb2c3ca6f5 https://www.encodeproject.org/files/ENCFF096MNC/@@download/ENCFF096MNC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF229IZG bam unfiltered alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGQ, ENCFF807MUK 896149952 ENCODE Processing Pipeline 8787c0b8a3ac7d7a0a9a7f4ac42a3ff6 https://www.encodeproject.org/files/ENCFF229IZG/@@download/ENCFF229IZG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF755XST bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGQ, ENCFF807MUK 394222968 ENCODE Processing Pipeline e648160fc8cf074a78976c06fd4c90b8 https://www.encodeproject.org/files/ENCFF755XST/@@download/ENCFF755XST.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF543WPY bigWig signal p-value ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF982TSB 355597246 ENCODE Processing Pipeline 3f3dbf05ac4636f91031dff0f5ba7be3 https://www.encodeproject.org/files/ENCFF543WPY/@@download/ENCFF543WPY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF536VJP bigWig fold change over control ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF434GLS 145703133 ENCODE Processing Pipeline 7a70dbd3dc5f657fe8ab0808363ec9fd https://www.encodeproject.org/files/ENCFF536VJP/@@download/ENCFF536VJP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF196ASP bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF982TSB 4131555 ENCODE Processing Pipeline 64b7354c7b51619ca6128bf33675c308 https://www.encodeproject.org/files/ENCFF196ASP/@@download/ENCFF196ASP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF632WIC bigWig fold change over control ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF434GLS, ENCFF982TSB 331833384 ENCODE Processing Pipeline 88a6e75a2fd47388c91a312c90084eff https://www.encodeproject.org/files/ENCFF632WIC/@@download/ENCFF632WIC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF550FMO bigBed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF849SJE 10884992 ENCODE Processing Pipeline cc1bf4254ca8ffcf874efe00d8eb4b19 https://www.encodeproject.org/files/ENCFF550FMO/@@download/ENCFF550FMO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF698NYD bed narrowPeak conservative idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077POH, ENCFF196ASP, ENCFF419RSJ, ENCFF849SJE 325464 ENCODE Processing Pipeline b10d33e4131d510bf72deb4e1bd3c53c https://www.encodeproject.org/files/ENCFF698NYD/@@download/ENCFF698NYD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF849SJE bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF434GLS, ENCFF982TSB 4692154 ENCODE Processing Pipeline 08f6d8c231bfaed6f2a814d88a853d08 https://www.encodeproject.org/files/ENCFF849SJE/@@download/ENCFF849SJE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF065GKJ bigBed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF196ASP 10154070 ENCODE Processing Pipeline 5bd22053b6b6bab6ad38f0df1dc11522 https://www.encodeproject.org/files/ENCFF065GKJ/@@download/ENCFF065GKJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF794FMX bigWig signal p-value ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF434GLS, ENCFF982TSB 411630268 ENCODE Processing Pipeline c7ff24f7abebaac7eb8dde555722b4b0 https://www.encodeproject.org/files/ENCFF794FMX/@@download/ENCFF794FMX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF503HZN bigWig signal p-value ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF434GLS 355178827 ENCODE Processing Pipeline 184995c239d31f862eb8e4df2df43652 https://www.encodeproject.org/files/ENCFF503HZN/@@download/ENCFF503HZN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF774TEU bigWig fold change over control ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF982TSB 220364876 ENCODE Processing Pipeline 52cc952d7f6ae99a779ecee438796dd0 https://www.encodeproject.org/files/ENCFF774TEU/@@download/ENCFF774TEU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF026YGL bigBed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077POH 5629566 ENCODE Processing Pipeline 2a586b2cb0bc5a00e66e7a9686456e00 https://www.encodeproject.org/files/ENCFF026YGL/@@download/ENCFF026YGL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF077POH bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF434GLS 2772280 ENCODE Processing Pipeline c4ee818c7433217824580809180caac3 https://www.encodeproject.org/files/ENCFF077POH/@@download/ENCFF077POH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF458SJU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF452RZW 575368 ENCODE Processing Pipeline 1457af92c4e66e2db6f400db20e43867 https://www.encodeproject.org/files/ENCFF458SJU/@@download/ENCFF458SJU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF680WWW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF698NYD 538829 ENCODE Processing Pipeline a17b1e0e073bcc32c31eaf9653074d7c https://www.encodeproject.org/files/ENCFF680WWW/@@download/ENCFF680WWW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF452RZW bed narrowPeak optimal idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077POH, ENCFF196ASP, ENCFF419RSJ, ENCFF849SJE 356838 ENCODE Processing Pipeline c6cb8b582ad34efa1f898a39c97ba8db https://www.encodeproject.org/files/ENCFF452RZW/@@download/ENCFF452RZW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF741WBD bigWig signal p-value ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF755XST 438114343 ENCODE Processing Pipeline 7bc9d0917ea198bb4c32e8a8f28348d8 https://www.encodeproject.org/files/ENCFF741WBD/@@download/ENCFF741WBD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF369KNP bigWig fold change over control ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF755XST 219363877 ENCODE Processing Pipeline 2d167764b96c0aa64e67c2572a698749 https://www.encodeproject.org/files/ENCFF369KNP/@@download/ENCFF369KNP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF394MKY bigWig signal p-value ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF096MNC, ENCFF108EFL 325849655 ENCODE Processing Pipeline 6c861cfdfc42c3caa49833c7039c0afd https://www.encodeproject.org/files/ENCFF394MKY/@@download/ENCFF394MKY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF714HTW bigWig signal p-value ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF096MNC, ENCFF108EFL, ENCFF755XST 429837939 ENCODE Processing Pipeline 4808a964e4c7b77882947efb03027df5 https://www.encodeproject.org/files/ENCFF714HTW/@@download/ENCFF714HTW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF199ENP bigWig fold change over control ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF096MNC, ENCFF108EFL 145509939 ENCODE Processing Pipeline 4d663be8511706c2bfab5b16e9325d45 https://www.encodeproject.org/files/ENCFF199ENP/@@download/ENCFF199ENP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF872MXG bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF096MNC, ENCFF108EFL 2783118 ENCODE Processing Pipeline daf430579c8509a224986a7ce42ca662 https://www.encodeproject.org/files/ENCFF872MXG/@@download/ENCFF872MXG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF947UVV bigWig fold change over control ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF096MNC, ENCFF108EFL, ENCFF755XST 329938541 ENCODE Processing Pipeline b6c2f39916f975324279af13dc3102f3 https://www.encodeproject.org/files/ENCFF947UVV/@@download/ENCFF947UVV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF110YHD bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF096MNC, ENCFF108EFL, ENCFF755XST 4691623 ENCODE Processing Pipeline d17f6e4a0575394c7ad1dda3c444bea2 https://www.encodeproject.org/files/ENCFF110YHD/@@download/ENCFF110YHD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF330VOA bigBed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF481EBP 10162824 ENCODE Processing Pipeline 5f06509ee9d90ba1b855d0a13d6cab47 https://www.encodeproject.org/files/ENCFF330VOA/@@download/ENCFF330VOA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF481EBP bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF755XST 4144183 ENCODE Processing Pipeline 6e0e715127161479dd410fa92e2928ea https://www.encodeproject.org/files/ENCFF481EBP/@@download/ENCFF481EBP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF987AKG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF291WJT 537368 ENCODE Processing Pipeline 960fb408a3de89047c0672c55dc2f500 https://www.encodeproject.org/files/ENCFF987AKG/@@download/ENCFF987AKG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF862TMQ bigBed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF872MXG 5653684 ENCODE Processing Pipeline 25d5a70f5c1c64607534a7d8ab3fee93 https://www.encodeproject.org/files/ENCFF862TMQ/@@download/ENCFF862TMQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF291WJT bed narrowPeak conservative idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF110YHD, ENCFF481EBP, ENCFF872MXG 324784 ENCODE Processing Pipeline 354ff0da2f63ca91d41ee46683ba98ac https://www.encodeproject.org/files/ENCFF291WJT/@@download/ENCFF291WJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF393XLD bigBed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF110YHD 10883375 ENCODE Processing Pipeline 472794af16d5206a33ef04e5095f79eb https://www.encodeproject.org/files/ENCFF393XLD/@@download/ENCFF393XLD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF588NYF bed narrowPeak optimal idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF110YHD, ENCFF481EBP, ENCFF872MXG 359763 ENCODE Processing Pipeline dd7204e1356625205a7ae66985c33cd6 https://www.encodeproject.org/files/ENCFF588NYF/@@download/ENCFF588NYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF521PIU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF588NYF 578354 ENCODE Processing Pipeline 47044171b9e8535904bac71082e68a6f https://www.encodeproject.org/files/ENCFF521PIU/@@download/ENCFF521PIU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QPO bam alignments ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPX 885136816 Richard Myers, HAIB 952a35d245b4a62f8f92fa7f0a4aa92b https://www.encodeproject.org/files/ENCFF000QPO/@@download/ENCFF000QPO.bam hg19 released biological replicates with identical biosample ENCFF000QPQ bigBed broadPeak peaks ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNN 960857 Richard Myers, HAIB cb3a2ace2e9702ce1407ff87663f7f8d https://www.encodeproject.org/files/ENCFF000QPQ/@@download/ENCFF000QPQ.bigBed hg19 released biological replicates with identical biosample ENCFF000QPR bigBed broadPeak peaks ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNO 1008393 Richard Myers, HAIB 1beee499511b04800cf6e192f6746887 https://www.encodeproject.org/files/ENCFF000QPR/@@download/ENCFF000QPR.bigBed hg19 released biological replicates with identical biosample ENCFF000QPS bam alignments ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QQA 1145479223 Richard Myers, HAIB 0a0a63503d100eb3e195dc72c2dc2f4b https://www.encodeproject.org/files/ENCFF000QPS/@@download/ENCFF000QPS.bam hg19 released biological replicates with identical biosample ENCFF000QPT bigWig raw signal ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 92718885 Richard Myers, HAIB fbc51b1984d9397d1298ef831dbe539c https://www.encodeproject.org/files/ENCFF000QPT/@@download/ENCFF000QPT.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QPU bigWig raw signal ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 126027833 Richard Myers, HAIB f0c6d946e893e95d38e7492a996bf616 https://www.encodeproject.org/files/ENCFF000QPU/@@download/ENCFF000QPU.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QPX fastq reads ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 914070422 Richard Myers, HAIB 24d72754196c9b990b088b5e9ae6b218 https://www.encodeproject.org/files/ENCFF000QPX/@@download/ENCFF000QPX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQG/ released biological replicates with identical biosample ENCFF000QQA fastq reads ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1191605706 Richard Myers, HAIB 6c05269a1c0a3c1ad1dad1535e79c35d https://www.encodeproject.org/files/ENCFF000QQA/@@download/ENCFF000QQA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF001UNN bed broadPeak peaks ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 624639 Richard Myers, HAIB 8b6b07eb5644e1feaa8604ed1ef7ec86 https://www.encodeproject.org/files/ENCFF001UNN/@@download/ENCFF001UNN.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNO bed broadPeak peaks ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 638006 Richard Myers, HAIB 494d738330db1f21ade1461787754e26 https://www.encodeproject.org/files/ENCFF001UNO/@@download/ENCFF001UNO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000XKV bam alignments ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XLE 1300160128 Kevin Struhl, HMS e112b22905746e3922a34d4d75b89a1a https://www.encodeproject.org/files/ENCFF000XKV/@@download/ENCFF000XKV.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XKX bigBed narrowPeak peaks ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJF 226646 Kevin Struhl, HMS 92608a85ed31613e13818c3b159a5c15 https://www.encodeproject.org/files/ENCFF000XKX/@@download/ENCFF000XKX.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XKY bigWig signal ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 438509146 Kevin Struhl, HMS 91be6a1511c1d3a3f027a0f6e156eb37 https://www.encodeproject.org/files/ENCFF000XKY/@@download/ENCFF000XKY.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XKZ bam alignments ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XLI 1280145649 Kevin Struhl, HMS 965abbf69a89b7a21a631351c988aba1 https://www.encodeproject.org/files/ENCFF000XKZ/@@download/ENCFF000XKZ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XLE fastq reads ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 1054983124 Kevin Struhl, HMS 1c81230eab18f2e34b367a4cca7e74df https://www.encodeproject.org/files/ENCFF000XLE/@@download/ENCFF000XLE.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XLI fastq reads ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 1029453779 Kevin Struhl, HMS d35212fcc8601f02a77985f5db5ab663 https://www.encodeproject.org/files/ENCFF000XLI/@@download/ENCFF000XLI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VJF bed narrowPeak peaks ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 66682 Kevin Struhl, HMS e1766126512ad2f81db5767124a863c7 https://www.encodeproject.org/files/ENCFF001VJF/@@download/ENCFF001VJF.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CTD bed narrowPeak optimal idr thresholded peaks ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 70522 ENCODE Consortium Analysis Working Group 168146bed937ff725b3e1f9e98b70ed2 https://www.encodeproject.org/files/ENCFF002CTD/@@download/ENCFF002CTD.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF327OQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTD 272347 ENCODE Consortium 73f0067cfb75e387346bbb6ec4e3c34f https://www.encodeproject.org/files/ENCFF327OQJ/@@download/ENCFF327OQJ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000QQR bam alignments ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QRE 1993852894 Richard Myers, HAIB c41444feae09fb421b991db1a02582fb https://www.encodeproject.org/files/ENCFF000QQR/@@download/ENCFF000QQR.bam hg19 released biological replicates with identical biosample ENCFF000QQS bigBed broadPeak peaks ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNR 255328 Richard Myers, HAIB c6776d63ae158bc59d4209d5c510197e https://www.encodeproject.org/files/ENCFF000QQS/@@download/ENCFF000QQS.bigBed hg19 released biological replicates with identical biosample ENCFF000QQT bigBed broadPeak peaks ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNS 154471 Richard Myers, HAIB 2de7783a96262592f330ce5d5a87ef6d https://www.encodeproject.org/files/ENCFF000QQT/@@download/ENCFF000QQT.bigBed hg19 released biological replicates with identical biosample ENCFF000QQV bam alignments ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QRH 2063550511 Richard Myers, HAIB 4fb040726431ffcb47dc8a2cc558dc0b https://www.encodeproject.org/files/ENCFF000QQV/@@download/ENCFF000QQV.bam hg19 released biological replicates with identical biosample ENCFF000QQW bigWig raw signal ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 147001143 Richard Myers, HAIB 5ef26f16b5d0271c4f15192ff4afeb32 https://www.encodeproject.org/files/ENCFF000QQW/@@download/ENCFF000QQW.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QQY bigWig raw signal ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 245671348 Richard Myers, HAIB 8638aca2e38781c25df6fdde340bf1d5 https://www.encodeproject.org/files/ENCFF000QQY/@@download/ENCFF000QQY.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QRE fastq reads ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2124839657 Richard Myers, HAIB a24598a9cdb917790b6e2cd03d2ad402 https://www.encodeproject.org/files/ENCFF000QRE/@@download/ENCFF000QRE.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQG/ released biological replicates with identical biosample ENCFF000QRH fastq reads ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2139598273 Richard Myers, HAIB 0fc8380d9eef802ee8619d0ebae1881d https://www.encodeproject.org/files/ENCFF000QRH/@@download/ENCFF000QRH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF001UNR bed broadPeak peaks ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 165056 Richard Myers, HAIB 3820c60fdccfdc6a241fe489ea187ce4 https://www.encodeproject.org/files/ENCFF001UNR/@@download/ENCFF001UNR.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNS bed broadPeak peaks ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 102303 Richard Myers, HAIB ad2ea0b41d0b512014e41d855732e0b4 https://www.encodeproject.org/files/ENCFF001UNS/@@download/ENCFF001UNS.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RGJ bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RGV 939427019 Richard Myers, HAIB c477cec97dcb67a194e0bcb4cda3970b https://www.encodeproject.org/files/ENCFF000RGJ/@@download/ENCFF000RGJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RGK bigBed broadPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UQZ 538487 Richard Myers, HAIB e267db7b5e7cba2a4cfdee492da9dfa8 https://www.encodeproject.org/files/ENCFF000RGK/@@download/ENCFF000RGK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RGL bigBed broadPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001URA 667567 Richard Myers, HAIB d6e31d8648abfea04c44fe5fd891fdef https://www.encodeproject.org/files/ENCFF000RGL/@@download/ENCFF000RGL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RGN bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RGY 1351377109 Richard Myers, HAIB 543c11af5a13936a50c98d991030dec5 https://www.encodeproject.org/files/ENCFF000RGN/@@download/ENCFF000RGN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RGO bigWig raw signal ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 18804694 Richard Myers, HAIB 6d7b48486f3c29f993cc23356a568699 https://www.encodeproject.org/files/ENCFF000RGO/@@download/ENCFF000RGO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000RGP bigWig raw signal ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 28706328 Richard Myers, HAIB c7827f612dc0924e32af3ee8017debf7 https://www.encodeproject.org/files/ENCFF000RGP/@@download/ENCFF000RGP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000RGV fastq reads ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 822686450 Richard Myers, HAIB 24f1ddbefbd9c9a375504d5b9f663d4f https://www.encodeproject.org/files/ENCFF000RGV/@@download/ENCFF000RGV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RGY fastq reads ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1285697417 Richard Myers, HAIB f5ff5781c7f85099b06856ca365705f2 https://www.encodeproject.org/files/ENCFF000RGY/@@download/ENCFF000RGY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001UQZ bed broadPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 298036 Richard Myers, HAIB 40c184eb9f75b597615b156980d819fa https://www.encodeproject.org/files/ENCFF001UQZ/@@download/ENCFF001UQZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001URA bed broadPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 394302 Richard Myers, HAIB 28b8958ce2ead1c799988dc48717130f https://www.encodeproject.org/files/ENCFF001URA/@@download/ENCFF001URA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CNS bed narrowPeak optimal idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 382176 ENCODE Consortium Analysis Working Group 47f8ab33c05f0a60dc591d3254061600 https://www.encodeproject.org/files/ENCFF002CNS/@@download/ENCFF002CNS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF433EZP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNS 958708 ENCODE Consortium a2c52390bb2ca480e57940465b89483f https://www.encodeproject.org/files/ENCFF433EZP/@@download/ENCFF433EZP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF621QHK bam unfiltered alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGV, ENCFF643CGH 1106576973 ENCODE Processing Pipeline 7ebba7501bf508154a2e3db0af86abd5 https://www.encodeproject.org/files/ENCFF621QHK/@@download/ENCFF621QHK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF660NOK bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGV, ENCFF643CGH 713466645 ENCODE Processing Pipeline eb4b75e7a65dcf614e3e40dabffc4381 https://www.encodeproject.org/files/ENCFF660NOK/@@download/ENCFF660NOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF382TBW bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGY, ENCFF643CGH 1029173377 ENCODE Processing Pipeline 6460694c47a81f369c7dcbc8fecc43bb https://www.encodeproject.org/files/ENCFF382TBW/@@download/ENCFF382TBW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF258QFE bam unfiltered alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGY, ENCFF643CGH 1656769750 ENCODE Processing Pipeline 3960cc8bc68b44199522a01543df5755 https://www.encodeproject.org/files/ENCFF258QFE/@@download/ENCFF258QFE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF795LLU bam unfiltered alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGV, ENCFF807MUK 1102890553 ENCODE Processing Pipeline b32ec66ed80b6104aa6aadeaddf57b4e https://www.encodeproject.org/files/ENCFF795LLU/@@download/ENCFF795LLU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF770MRP bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGV, ENCFF807MUK 713855007 ENCODE Processing Pipeline c2eb752fe5783c66a214f6bd64fbfd25 https://www.encodeproject.org/files/ENCFF770MRP/@@download/ENCFF770MRP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF175LQE bam unfiltered alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGY, ENCFF807MUK 1650888420 ENCODE Processing Pipeline 0e9fbd812b324b626a78107d0986da5a https://www.encodeproject.org/files/ENCFF175LQE/@@download/ENCFF175LQE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF374UFJ bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGY, ENCFF807MUK 1029550955 ENCODE Processing Pipeline 073a44dafbc2800c41da127dc15b1860 https://www.encodeproject.org/files/ENCFF374UFJ/@@download/ENCFF374UFJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF402XAG bigWig signal p-value ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF382TBW 496416258 ENCODE Processing Pipeline 48d1d5aa6a44548a4521d89f6653f060 https://www.encodeproject.org/files/ENCFF402XAG/@@download/ENCFF402XAG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF400TAQ bigWig signal p-value ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF660NOK 421337341 ENCODE Processing Pipeline 0faac804f5b811b1f356acc872d8b4ec https://www.encodeproject.org/files/ENCFF400TAQ/@@download/ENCFF400TAQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF823PZG bigWig signal p-value ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF382TBW, ENCFF660NOK 522812908 ENCODE Processing Pipeline e5be58e0fb15ab36943c8027892013a7 https://www.encodeproject.org/files/ENCFF823PZG/@@download/ENCFF823PZG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF183SML bigWig fold change over control ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF382TBW, ENCFF660NOK 686306468 ENCODE Processing Pipeline 3b5a70f6931f3cad6b908768810db805 https://www.encodeproject.org/files/ENCFF183SML/@@download/ENCFF183SML.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF369COI bigWig fold change over control ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF660NOK 353086745 ENCODE Processing Pipeline 9376fd59267744b87131581bdf5a916f https://www.encodeproject.org/files/ENCFF369COI/@@download/ENCFF369COI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF101WMO bigWig fold change over control ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF382TBW 460353884 ENCODE Processing Pipeline f1d3ded7ee54ab387680a99ff6ac2b50 https://www.encodeproject.org/files/ENCFF101WMO/@@download/ENCFF101WMO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF987WBU bigBed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077SAB 10995687 ENCODE Processing Pipeline 3366c931d045d61da5cc403d5217e362 https://www.encodeproject.org/files/ENCFF987WBU/@@download/ENCFF987WBU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF077SAB bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF077ITP, ENCFF660NOK 5148454 ENCODE Processing Pipeline 5a1c844faa807af1bd9a4f7c0690183b https://www.encodeproject.org/files/ENCFF077SAB/@@download/ENCFF077SAB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF690TOW bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077ITP, ENCFF382TBW, ENCFF660NOK 6223019 ENCODE Processing Pipeline a757d44af0f209e0b1e94fe9e81435d5 https://www.encodeproject.org/files/ENCFF690TOW/@@download/ENCFF690TOW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF525HYS bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077ITP, ENCFF382TBW 5514044 ENCODE Processing Pipeline d3ab8086cd02d2edbd31589fabcf48d1 https://www.encodeproject.org/files/ENCFF525HYS/@@download/ENCFF525HYS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF122RTT bigBed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF525HYS 13310354 ENCODE Processing Pipeline 1d3dda006de8de3a38481b1beaf63403 https://www.encodeproject.org/files/ENCFF122RTT/@@download/ENCFF122RTT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF755GZM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276FAU 703631 ENCODE Processing Pipeline bd8e01897fe7fdf3a5e3a208b006166d https://www.encodeproject.org/files/ENCFF755GZM/@@download/ENCFF755GZM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF128AGL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF363UWP 729711 ENCODE Processing Pipeline 610e15b3c41d0d2a1b6907dda777822e https://www.encodeproject.org/files/ENCFF128AGL/@@download/ENCFF128AGL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF363UWP bed narrowPeak optimal idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077SAB, ENCFF419RSJ, ENCFF525HYS, ENCFF690TOW 403936 ENCODE Processing Pipeline f9cde27ff4b881bbfe880af72eec2f12 https://www.encodeproject.org/files/ENCFF363UWP/@@download/ENCFF363UWP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF511QAN bigBed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF690TOW 13590858 ENCODE Processing Pipeline 2381fd876afa96f13c1350e7af6bbd15 https://www.encodeproject.org/files/ENCFF511QAN/@@download/ENCFF511QAN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF276FAU bed narrowPeak conservative idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077SAB, ENCFF419RSJ, ENCFF525HYS, ENCFF690TOW 386150 ENCODE Processing Pipeline 75c373da02150f33692fc8ffb21782e4 https://www.encodeproject.org/files/ENCFF276FAU/@@download/ENCFF276FAU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF217AIH bigWig fold change over control ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF770MRP 353119375 ENCODE Processing Pipeline 4d4c14a6d44095e429d00dd8973c1649 https://www.encodeproject.org/files/ENCFF217AIH/@@download/ENCFF217AIH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF704JCO bigWig signal p-value ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF374UFJ 502677338 ENCODE Processing Pipeline a42915f80ad84eeea83c1bfe036e11f9 https://www.encodeproject.org/files/ENCFF704JCO/@@download/ENCFF704JCO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF096PKN bigWig signal p-value ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF374UFJ, ENCFF770MRP 530265473 ENCODE Processing Pipeline 43245ad8f4299556fdf1f9fe5698e703 https://www.encodeproject.org/files/ENCFF096PKN/@@download/ENCFF096PKN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF711QGW bigWig fold change over control ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF374UFJ 462997116 ENCODE Processing Pipeline 0340ec033b9d2d44a524f2a815dcff61 https://www.encodeproject.org/files/ENCFF711QGW/@@download/ENCFF711QGW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF008AIJ bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF770MRP 5207050 ENCODE Processing Pipeline 4cda13b5e2648b6a4693dea2848d69f6 https://www.encodeproject.org/files/ENCFF008AIJ/@@download/ENCFF008AIJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF097EOB bigWig signal p-value ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF770MRP 377779539 ENCODE Processing Pipeline bbdfc622aeeb82021cb8a61307b0373b https://www.encodeproject.org/files/ENCFF097EOB/@@download/ENCFF097EOB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF986RLB bigBed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310NCC 13591576 ENCODE Processing Pipeline 43591f5ed1a74125ba1228c01acb05b3 https://www.encodeproject.org/files/ENCFF986RLB/@@download/ENCFF986RLB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF271VUK bed narrowPeak conservative idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF008AIJ, ENCFF310NCC, ENCFF477NKZ 383606 ENCODE Processing Pipeline 723142258b31622ded1b6444cff0ea70 https://www.encodeproject.org/files/ENCFF271VUK/@@download/ENCFF271VUK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF310NCC bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF374UFJ, ENCFF770MRP 6223046 ENCODE Processing Pipeline 087a0fe591266cc1f432ddeea84bcfa1 https://www.encodeproject.org/files/ENCFF310NCC/@@download/ENCFF310NCC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF525FMR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF958LUB 728062 ENCODE Processing Pipeline bac9dfa4c3afe755de29c03ef2fa7818 https://www.encodeproject.org/files/ENCFF525FMR/@@download/ENCFF525FMR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF889PNK bigWig fold change over control ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF374UFJ, ENCFF770MRP 691244847 ENCODE Processing Pipeline d1f3dad0c4544b38553f0eddae5053c2 https://www.encodeproject.org/files/ENCFF889PNK/@@download/ENCFF889PNK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF477NKZ bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF374UFJ 5557576 ENCODE Processing Pipeline bffafc095efd7e2bcf6c9fb193ef26b4 https://www.encodeproject.org/files/ENCFF477NKZ/@@download/ENCFF477NKZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF006BCG bigBed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF008AIJ 11025879 ENCODE Processing Pipeline 6856771ce2ed116d695c822287f1b104 https://www.encodeproject.org/files/ENCFF006BCG/@@download/ENCFF006BCG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF908YFO bigBed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477NKZ 13364591 ENCODE Processing Pipeline e6a54fba285c774256bf702bd3bdf1d2 https://www.encodeproject.org/files/ENCFF908YFO/@@download/ENCFF908YFO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF640XOB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271VUK 701644 ENCODE Processing Pipeline 444070d131139fd23a4415cb628c7798 https://www.encodeproject.org/files/ENCFF640XOB/@@download/ENCFF640XOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF958LUB bed narrowPeak optimal idr thresholded peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF008AIJ, ENCFF310NCC, ENCFF477NKZ 402582 ENCODE Processing Pipeline 3865699116468e4950ef588d5cb2ba3e https://www.encodeproject.org/files/ENCFF958LUB/@@download/ENCFF958LUB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PEW bigBed broadPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFC 377562 Richard Myers, HAIB ed5ddb16bc9a97e1b0ac0cc68b3ff18a https://www.encodeproject.org/files/ENCFF000PEW/@@download/ENCFF000PEW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEX bigBed broadPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFD 557092 Richard Myers, HAIB 21d4677cb16e62d50b4de38405f071d7 https://www.encodeproject.org/files/ENCFF000PEX/@@download/ENCFF000PEX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEY bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PFJ 681160956 Richard Myers, HAIB 983ccd14bdd71094e49f54cde2102ecf https://www.encodeproject.org/files/ENCFF000PEY/@@download/ENCFF000PEY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PEZ bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PFL 1099965740 Richard Myers, HAIB e30d6f6cbd6e0f6a0a9cedf9669ac900 https://www.encodeproject.org/files/ENCFF000PEZ/@@download/ENCFF000PEZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PFA bigWig raw signal ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 20148347 Richard Myers, HAIB 10142c442eb54b4b1f855aa3b1dab381 https://www.encodeproject.org/files/ENCFF000PFA/@@download/ENCFF000PFA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PFB bigWig raw signal ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 15981007 Richard Myers, HAIB f960746352fdc71b0421f1b509b5e8ee https://www.encodeproject.org/files/ENCFF000PFB/@@download/ENCFF000PFB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PFJ fastq reads ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1037539428 Richard Myers, HAIB 3fba5f22598a20d54b50346a6cc9f020 https://www.encodeproject.org/files/ENCFF000PFJ/@@download/ENCFF000PFJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000PFL fastq reads ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1395411259 Richard Myers, HAIB e9b64f9fe3d80bec3496eaf5a00fb204 https://www.encodeproject.org/files/ENCFF000PFL/@@download/ENCFF000PFL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF001UFC bed broadPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 193935 Richard Myers, HAIB f30b0e5ee2eb7202b4f7b932de67a484 https://www.encodeproject.org/files/ENCFF001UFC/@@download/ENCFF001UFC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UFD bed broadPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 333421 Richard Myers, HAIB ca65fa9b20ea44f8108fdf1c82cbaf3e https://www.encodeproject.org/files/ENCFF001UFD/@@download/ENCFF001UFD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CKA bed narrowPeak optimal idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 346694 ENCODE Consortium Analysis Working Group d2923dff41466751318a0e525898a21d https://www.encodeproject.org/files/ENCFF002CKA/@@download/ENCFF002CKA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF504PEN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKA 856676 ENCODE Consortium a497f8f63b393ed5653411ab3bee8527 https://www.encodeproject.org/files/ENCFF504PEN/@@download/ENCFF504PEN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF876YIT bam unfiltered alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFJ, ENCFF643CGH 1224503564 ENCODE Processing Pipeline fd84255d4632271f9b90accc58a97795 https://www.encodeproject.org/files/ENCFF876YIT/@@download/ENCFF876YIT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF367RFV bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFJ, ENCFF643CGH 471915662 ENCODE Processing Pipeline 12c6d0163d2bae0241bfda248bf8fea0 https://www.encodeproject.org/files/ENCFF367RFV/@@download/ENCFF367RFV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF588BOD bam unfiltered alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFL, ENCFF643CGH 1696527917 ENCODE Processing Pipeline 5ab9da3e00417dbe20b4d5aba1ab75fb https://www.encodeproject.org/files/ENCFF588BOD/@@download/ENCFF588BOD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF459LGD bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFL, ENCFF643CGH 711829995 ENCODE Processing Pipeline 89f95d116b4eb79c8c254789f0ebe29e https://www.encodeproject.org/files/ENCFF459LGD/@@download/ENCFF459LGD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF793OVX bam unfiltered alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFJ, ENCFF807MUK 1221331749 ENCODE Processing Pipeline ae8226b0892f5cd420cf6dcb67fd9fe0 https://www.encodeproject.org/files/ENCFF793OVX/@@download/ENCFF793OVX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF352NJI bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFJ, ENCFF807MUK 472079210 ENCODE Processing Pipeline fc5d57bceea5450b2f09ab7f9381b51b https://www.encodeproject.org/files/ENCFF352NJI/@@download/ENCFF352NJI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF050BAB bam unfiltered alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFL, ENCFF807MUK 1689720605 ENCODE Processing Pipeline 03152d1be34a41afbaed58e094756654 https://www.encodeproject.org/files/ENCFF050BAB/@@download/ENCFF050BAB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF654DIS bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFL, ENCFF807MUK 712116205 ENCODE Processing Pipeline f1ecfcf0a544a79d292ed79094b179d2 https://www.encodeproject.org/files/ENCFF654DIS/@@download/ENCFF654DIS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF557LLY bigWig signal p-value ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF352NJI 364959613 ENCODE Processing Pipeline eba5410ca8e2fc2ae7ae92572b507ab1 https://www.encodeproject.org/files/ENCFF557LLY/@@download/ENCFF557LLY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF472QUP bigWig signal p-value ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF654DIS 494405886 ENCODE Processing Pipeline bef3f1a0631b8d755be3a5755a1bf68e https://www.encodeproject.org/files/ENCFF472QUP/@@download/ENCFF472QUP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF299SHS bigWig signal p-value ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF352NJI, ENCFF654DIS 503199284 ENCODE Processing Pipeline 6493533cd217dc18d15f971de6085e8c https://www.encodeproject.org/files/ENCFF299SHS/@@download/ENCFF299SHS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF701YXF bigWig fold change over control ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF654DIS 297265974 ENCODE Processing Pipeline 84c6afbfc88d406ed319e88eff517068 https://www.encodeproject.org/files/ENCFF701YXF/@@download/ENCFF701YXF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF662EBQ bigWig fold change over control ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF352NJI 199031172 ENCODE Processing Pipeline 92972f7c8e2bff2433a9ebb4495b5a76 https://www.encodeproject.org/files/ENCFF662EBQ/@@download/ENCFF662EBQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF891SYJ bigWig fold change over control ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF352NJI, ENCFF654DIS 442630826 ENCODE Processing Pipeline c4a8ac2e7549eb44ddcc327f00e4d67b https://www.encodeproject.org/files/ENCFF891SYJ/@@download/ENCFF891SYJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF558HCQ bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF654DIS 3913119 ENCODE Processing Pipeline 62240f1162f1f1d0eb4f3b039ece7872 https://www.encodeproject.org/files/ENCFF558HCQ/@@download/ENCFF558HCQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF570CST bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF352NJI 3984799 ENCODE Processing Pipeline 69bb711c8f182fb057f23125c2984743 https://www.encodeproject.org/files/ENCFF570CST/@@download/ENCFF570CST.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF533OIU bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF352NJI, ENCFF654DIS 4988837 ENCODE Processing Pipeline cd8ee5cf4759c1221517536f34ff0e38 https://www.encodeproject.org/files/ENCFF533OIU/@@download/ENCFF533OIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF762ZEN bigBed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558HCQ 8333321 ENCODE Processing Pipeline b7d7fe7fec8b6e7a349838ecff942ef2 https://www.encodeproject.org/files/ENCFF762ZEN/@@download/ENCFF762ZEN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF411DEG bigBed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF570CST 9163130 ENCODE Processing Pipeline 093ceb17b978109baf9ae56b63c52b74 https://www.encodeproject.org/files/ENCFF411DEG/@@download/ENCFF411DEG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF616ASX bigBed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF533OIU 11124396 ENCODE Processing Pipeline bb6d5cbbf20f0a14c27f67ffb6724e85 https://www.encodeproject.org/files/ENCFF616ASX/@@download/ENCFF616ASX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF174BWR bed narrowPeak conservative idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF533OIU, ENCFF558HCQ, ENCFF570CST 242225 ENCODE Processing Pipeline 44227bb55d9de5c5fe7844d3deada44e https://www.encodeproject.org/files/ENCFF174BWR/@@download/ENCFF174BWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF222JEP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF174BWR 476453 ENCODE Processing Pipeline ba26f61f0baf99f04d0bc4c749525a99 https://www.encodeproject.org/files/ENCFF222JEP/@@download/ENCFF222JEP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF305QDB bed narrowPeak optimal idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF533OIU, ENCFF558HCQ, ENCFF570CST 312444 ENCODE Processing Pipeline 212dacefd25c5361bc1b2e5400f36d9c https://www.encodeproject.org/files/ENCFF305QDB/@@download/ENCFF305QDB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF725DDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305QDB 693547 ENCODE Processing Pipeline 91acb947ea0d0c19c4479bfd3c121687 https://www.encodeproject.org/files/ENCFF725DDJ/@@download/ENCFF725DDJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF147UKA bigWig fold change over control ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202PGY, ENCFF367RFV, ENCFF459LGD 442461855 ENCODE Processing Pipeline 8dfd939f545a155cf6c7e083be551bde https://www.encodeproject.org/files/ENCFF147UKA/@@download/ENCFF147UKA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF869PER bigWig signal p-value ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF202PGY, ENCFF367RFV 397419362 ENCODE Processing Pipeline 0d7ef7eeb79e99f0edf2bff81859f4e6 https://www.encodeproject.org/files/ENCFF869PER/@@download/ENCFF869PER.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF556YJV bigWig signal p-value ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202PGY, ENCFF367RFV, ENCFF459LGD 502873338 ENCODE Processing Pipeline fbe7f297c2686b69776f88ac10ced298 https://www.encodeproject.org/files/ENCFF556YJV/@@download/ENCFF556YJV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF967CRV bigWig fold change over control ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF459LGD 299843965 ENCODE Processing Pipeline c938161d09b7313b1f987afe81ce6be4 https://www.encodeproject.org/files/ENCFF967CRV/@@download/ENCFF967CRV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF160JWE bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF202PGY, ENCFF367RFV, ENCFF459LGD 5015990 ENCODE Processing Pipeline 99224ccf37c6aef4c94c1e8301162b7f https://www.encodeproject.org/files/ENCFF160JWE/@@download/ENCFF160JWE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF098PZH bigBed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF427ZET 9146486 ENCODE Processing Pipeline 4fc2c66d37959572fdbc5b60a13e6624 https://www.encodeproject.org/files/ENCFF098PZH/@@download/ENCFF098PZH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF958DUA bigWig fold change over control ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF202PGY, ENCFF367RFV 207831143 ENCODE Processing Pipeline d2c4eab886c1f9e93a0c3a7cc562ddc1 https://www.encodeproject.org/files/ENCFF958DUA/@@download/ENCFF958DUA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF427ZET bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF202PGY, ENCFF367RFV 3984004 ENCODE Processing Pipeline 5af85c641221c31eb2ba93ab7bbea18b https://www.encodeproject.org/files/ENCFF427ZET/@@download/ENCFF427ZET.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF857UJJ bigBed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF609JKB 8333727 ENCODE Processing Pipeline ad12e076b36c176bbf5c983d36aa2bb6 https://www.encodeproject.org/files/ENCFF857UJJ/@@download/ENCFF857UJJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF504XLW bigBed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF160JWE 11164263 ENCODE Processing Pipeline 060bc1dd238cfdbaf35621a75a8d1862 https://www.encodeproject.org/files/ENCFF504XLW/@@download/ENCFF504XLW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF838EBD bigWig signal p-value ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF459LGD 408450330 ENCODE Processing Pipeline 4d18daa76c2a5c8394155f9a95ccc161 https://www.encodeproject.org/files/ENCFF838EBD/@@download/ENCFF838EBD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF278XOE bed narrowPeak optimal idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF160JWE, ENCFF419RSJ, ENCFF427ZET, ENCFF609JKB 325860 ENCODE Processing Pipeline 4a65170393f739c541a348f992053dce https://www.encodeproject.org/files/ENCFF278XOE/@@download/ENCFF278XOE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF609JKB bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF459LGD 3909498 ENCODE Processing Pipeline 4a1b99c931c164ba16dc02b673227430 https://www.encodeproject.org/files/ENCFF609JKB/@@download/ENCFF609JKB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF599XJI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF278XOE 713368 ENCODE Processing Pipeline 4ee561da06ac878143a3213591227eda https://www.encodeproject.org/files/ENCFF599XJI/@@download/ENCFF599XJI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF769HVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF557UKG 590693 ENCODE Processing Pipeline 4824f823cc8267db47dfc1b3c9e55735 https://www.encodeproject.org/files/ENCFF769HVQ/@@download/ENCFF769HVQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF557UKG bed narrowPeak conservative idr thresholded peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF160JWE, ENCFF419RSJ, ENCFF427ZET, ENCFF609JKB 250716 ENCODE Processing Pipeline ea319e7d52af70ed2e591ad444d1376a https://www.encodeproject.org/files/ENCFF557UKG/@@download/ENCFF557UKG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000YHT bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YID 408992276 Michael Snyder, Stanford e49c3b4e5bce0b2ebf98f950d7364a30 https://www.encodeproject.org/files/ENCFF000YHT/@@download/ENCFF000YHT.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YHU bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YIC 471162093 Michael Snyder, Stanford 32c11f1c3fd5defea04977bc4043aebd https://www.encodeproject.org/files/ENCFF000YHU/@@download/ENCFF000YHU.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YHV bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMI 3914136 Michael Snyder, Stanford c70508591a026a563d4cfc49eba7d5ee https://www.encodeproject.org/files/ENCFF000YHV/@@download/ENCFF000YHV.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YHW bigWig signal ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 323593049 Michael Snyder, Stanford 4c37c4f415e7513d27e190f9020585be https://www.encodeproject.org/files/ENCFF000YHW/@@download/ENCFF000YHW.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YIC fastq reads ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1037919457 Michael Snyder, Stanford 8ee717ffabf4e447e9a1a60dca388266 https://www.encodeproject.org/files/ENCFF000YIC/@@download/ENCFF000YIC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YID fastq reads ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 804878880 Michael Snyder, Stanford 976859bf6db81607a814acaca902a945 https://www.encodeproject.org/files/ENCFF000YID/@@download/ENCFF000YID.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VMI bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1882743 Michael Snyder, Stanford ebf5ea511ad1df631c5ff99c4f772e1e https://www.encodeproject.org/files/ENCFF001VMI/@@download/ENCFF001VMI.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CVV bed narrowPeak optimal idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 892426 ENCODE Consortium Analysis Working Group 04e3941e0e52a83b13096436c6491a25 https://www.encodeproject.org/files/ENCFF002CVV/@@download/ENCFF002CVV.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF851XOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVV 2015807 ENCODE Consortium bfde32b3a79b960201d3b1634c66b404 https://www.encodeproject.org/files/ENCFF851XOZ/@@download/ENCFF851XOZ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF953ZZL bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YID, ENCFF643CGH 630166655 ENCODE Processing Pipeline ecf3214addf8a76c29bf49c86cb59fdb https://www.encodeproject.org/files/ENCFF953ZZL/@@download/ENCFF953ZZL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF443POA bam unfiltered alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YID, ENCFF643CGH 990153086 ENCODE Processing Pipeline 35e2b16ccf394d65757dce99c2efc1c9 https://www.encodeproject.org/files/ENCFF443POA/@@download/ENCFF443POA.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF763YQX bam unfiltered alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YIC, ENCFF643CGH 1239687566 ENCODE Processing Pipeline b0c8eca0d7670f1adaa07b7fa5583a62 https://www.encodeproject.org/files/ENCFF763YQX/@@download/ENCFF763YQX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF729WGC bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YIC, ENCFF643CGH 773943061 ENCODE Processing Pipeline 19d08f372ee820620943fde08716d257 https://www.encodeproject.org/files/ENCFF729WGC/@@download/ENCFF729WGC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF197ZMK bam unfiltered alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YID, ENCFF807MUK 985976367 ENCODE Processing Pipeline bad93339f674ebd00d84ceccf736bd57 https://www.encodeproject.org/files/ENCFF197ZMK/@@download/ENCFF197ZMK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF523MPI bam unfiltered alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YIC, ENCFF807MUK 1235094193 ENCODE Processing Pipeline 87bb80b3e81bbbd4d7fcf88ba41d3791 https://www.encodeproject.org/files/ENCFF523MPI/@@download/ENCFF523MPI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF353LOM bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YID, ENCFF807MUK 630657167 ENCODE Processing Pipeline 75e46c63419d3254121106b62f82276b https://www.encodeproject.org/files/ENCFF353LOM/@@download/ENCFF353LOM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF059XPJ bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YIC, ENCFF807MUK 774450170 ENCODE Processing Pipeline e075cc65f9ae4e7036f8aa1afa7307a4 https://www.encodeproject.org/files/ENCFF059XPJ/@@download/ENCFF059XPJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF446IYW bigWig signal p-value ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF729WGC 443939847 ENCODE Processing Pipeline 3cf37398515c37ea2f8e69a2915f8afc https://www.encodeproject.org/files/ENCFF446IYW/@@download/ENCFF446IYW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF561NSS bigWig signal p-value ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF953ZZL 408808172 ENCODE Processing Pipeline 9041c7eb9a8f6456dbf42c777f33a9dd https://www.encodeproject.org/files/ENCFF561NSS/@@download/ENCFF561NSS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF999NRK bigWig signal p-value ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF729WGC, ENCFF953ZZL 526689549 ENCODE Processing Pipeline 3b36966e35b4afea3c3cd535a9b86a83 https://www.encodeproject.org/files/ENCFF999NRK/@@download/ENCFF999NRK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF966BXU bigWig fold change over control ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF729WGC 386570850 ENCODE Processing Pipeline 6d2522806670bd4238620481aef35979 https://www.encodeproject.org/files/ENCFF966BXU/@@download/ENCFF966BXU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430NNH bigWig fold change over control ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF729WGC, ENCFF953ZZL 618527139 ENCODE Processing Pipeline 33a35ab99d2a83d0334e4d169b8911aa https://www.encodeproject.org/files/ENCFF430NNH/@@download/ENCFF430NNH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF028EKK bigWig fold change over control ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF953ZZL 350892026 ENCODE Processing Pipeline d829897614f4f5dde5b4d3e6da93bba5 https://www.encodeproject.org/files/ENCFF028EKK/@@download/ENCFF028EKK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF055JYQ bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF729WGC 5039609 ENCODE Processing Pipeline 4d5e2f4ec418809660c03ea8aae3364d https://www.encodeproject.org/files/ENCFF055JYQ/@@download/ENCFF055JYQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF174YEH bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF953ZZL 5026150 ENCODE Processing Pipeline 2fc56ee9649c16389f5b9cf74edc0288 https://www.encodeproject.org/files/ENCFF174YEH/@@download/ENCFF174YEH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF359XDS bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF055JYQ 11210210 ENCODE Processing Pipeline 156c65b28ff18edfbeac37d4e505bcae https://www.encodeproject.org/files/ENCFF359XDS/@@download/ENCFF359XDS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF817MVX bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF729WGC, ENCFF953ZZL 5902996 ENCODE Processing Pipeline 2320eb5e619ab2ec8e58bb429751dbf7 https://www.encodeproject.org/files/ENCFF817MVX/@@download/ENCFF817MVX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF321KQD bed narrowPeak optimal idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055JYQ, ENCFF174YEH, ENCFF419RSJ, ENCFF817MVX 765147 ENCODE Processing Pipeline 7eefd24d34e7e7022be375a336f82ac8 https://www.encodeproject.org/files/ENCFF321KQD/@@download/ENCFF321KQD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF196UZE bed narrowPeak conservative idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF055JYQ, ENCFF174YEH, ENCFF419RSJ, ENCFF817MVX 720168 ENCODE Processing Pipeline 013ff1a9b0eea71e032c73043ad273db https://www.encodeproject.org/files/ENCFF196UZE/@@download/ENCFF196UZE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF158KRK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF196UZE 1209675 ENCODE Processing Pipeline c8403ec13e48b12b87d387194fc27a4a https://www.encodeproject.org/files/ENCFF158KRK/@@download/ENCFF158KRK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185NME bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF817MVX 11512813 ENCODE Processing Pipeline d614e5796c80df5042c8ce875d7720e2 https://www.encodeproject.org/files/ENCFF185NME/@@download/ENCFF185NME.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848UKQ bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF174YEH 11078112 ENCODE Processing Pipeline 0a6b8e06eee32ee44b37bcc2318ecc23 https://www.encodeproject.org/files/ENCFF848UKQ/@@download/ENCFF848UKQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF111OHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF321KQD 1266751 ENCODE Processing Pipeline b1b53d397280a42b4c495fac4d97489f https://www.encodeproject.org/files/ENCFF111OHC/@@download/ENCFF111OHC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF206GZD bigWig signal p-value ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353LOM, ENCFF710NTS 419966993 ENCODE Processing Pipeline bfe9223038c3e40de408232c9d564c59 https://www.encodeproject.org/files/ENCFF206GZD/@@download/ENCFF206GZD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF206BMO bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF059XPJ, ENCFF710NTS 5056575 ENCODE Processing Pipeline b4656163d89caf96eaf4861a3a13b877 https://www.encodeproject.org/files/ENCFF206BMO/@@download/ENCFF206BMO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF766JMB bigWig fold change over control ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF059XPJ, ENCFF710NTS 384269122 ENCODE Processing Pipeline 5d2f7987412539243b58a4ac4ab205f8 https://www.encodeproject.org/files/ENCFF766JMB/@@download/ENCFF766JMB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF096JSS bigWig fold change over control ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353LOM, ENCFF710NTS 350196524 ENCODE Processing Pipeline 38262b8666e01a70e6b50cc4ec9b6ffa https://www.encodeproject.org/files/ENCFF096JSS/@@download/ENCFF096JSS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF755NTM bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353LOM, ENCFF710NTS 4992247 ENCODE Processing Pipeline 50117195db5af85c352e3c74b5c52af5 https://www.encodeproject.org/files/ENCFF755NTM/@@download/ENCFF755NTM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF143EHM bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059XPJ, ENCFF353LOM, ENCFF710NTS 5927380 ENCODE Processing Pipeline 88d7cb6ea70b61b2080caa85ae611e97 https://www.encodeproject.org/files/ENCFF143EHM/@@download/ENCFF143EHM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF819GCB bed narrowPeak conservative idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF143EHM, ENCFF206BMO, ENCFF755NTM 725058 ENCODE Processing Pipeline 7e414ea9b397b8798ce1f8fb535b1845 https://www.encodeproject.org/files/ENCFF819GCB/@@download/ENCFF819GCB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF446NGE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF819GCB 1212438 ENCODE Processing Pipeline c1a5064e9990165bcde061e3248af601 https://www.encodeproject.org/files/ENCFF446NGE/@@download/ENCFF446NGE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF429XKT bed narrowPeak optimal idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF143EHM, ENCFF206BMO, ENCFF755NTM 766395 ENCODE Processing Pipeline 88c12b16ffd687378e1854b5f80644c8 https://www.encodeproject.org/files/ENCFF429XKT/@@download/ENCFF429XKT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF017NCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF429XKT 1265144 ENCODE Processing Pipeline 90fe163ef22a44b717b791975902c770 https://www.encodeproject.org/files/ENCFF017NCS/@@download/ENCFF017NCS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF372CSD bigWig signal p-value ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF059XPJ, ENCFF710NTS 546137441 ENCODE Processing Pipeline 67b9f7d5b2b2d5ca7af99d5ba65162cd https://www.encodeproject.org/files/ENCFF372CSD/@@download/ENCFF372CSD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF048SXS bigWig signal p-value ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059XPJ, ENCFF353LOM, ENCFF710NTS 527159045 ENCODE Processing Pipeline b30ab55b8600abb1c2a74de6b6b2b34b https://www.encodeproject.org/files/ENCFF048SXS/@@download/ENCFF048SXS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF513ZML bigWig fold change over control ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059XPJ, ENCFF353LOM, ENCFF710NTS 618353754 ENCODE Processing Pipeline 3ffdf17a5525eb7479cf1c2028628c4a https://www.encodeproject.org/files/ENCFF513ZML/@@download/ENCFF513ZML.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF891UWD bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF206BMO 11220949 ENCODE Processing Pipeline cabf14c7aad07d13757c305705d4bebe https://www.encodeproject.org/files/ENCFF891UWD/@@download/ENCFF891UWD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF394XAF bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF755NTM 11032435 ENCODE Processing Pipeline cd5bbf137b66e890036959248b826f25 https://www.encodeproject.org/files/ENCFF394XAF/@@download/ENCFF394XAF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF013VFZ bigBed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF143EHM 11506701 ENCODE Processing Pipeline 8482b617c82aad8c3e16b3e41724d97b https://www.encodeproject.org/files/ENCFF013VFZ/@@download/ENCFF013VFZ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YNT bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOM 480996849 Michael Snyder, Stanford a42edb4723be77aec7f7e4b1a6c4d33a https://www.encodeproject.org/files/ENCFF000YNT/@@download/ENCFF000YNT.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YNU bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOO 373122138 Michael Snyder, Stanford dd8a115058cbeced9e3b499e125394e7 https://www.encodeproject.org/files/ENCFF000YNU/@@download/ENCFF000YNU.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YNV bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNG 964568 Michael Snyder, Stanford 3430aca64389e8c45e015777a631ad7f https://www.encodeproject.org/files/ENCFF000YNV/@@download/ENCFF000YNV.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YOA bigWig signal ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 309241361 Michael Snyder, Stanford 39c55409551d7f91f79ee0f3a91761d9 https://www.encodeproject.org/files/ENCFF000YOA/@@download/ENCFF000YOA.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YOM fastq reads ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1019972437 Michael Snyder, Stanford ef4217456730e8ffb95a4eaaa5ef6f3c https://www.encodeproject.org/files/ENCFF000YOM/@@download/ENCFF000YOM.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YOO fastq reads ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 682265445 Michael Snyder, Stanford 62481764ed2ee4797965e67086924105 https://www.encodeproject.org/files/ENCFF000YOO/@@download/ENCFF000YOO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VNG bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 408221 Michael Snyder, Stanford 24c2a5ba894e0cc0c6527157d5a9d17e https://www.encodeproject.org/files/ENCFF001VNG/@@download/ENCFF001VNG.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CWS bed narrowPeak optimal idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 95959 ENCODE Consortium Analysis Working Group 3258cc485e176b5d51866301f5e00016 https://www.encodeproject.org/files/ENCFF002CWS/@@download/ENCFF002CWS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF505YNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWS 324081 ENCODE Consortium f765058d853b61757dbf1378dd741a08 https://www.encodeproject.org/files/ENCFF505YNZ/@@download/ENCFF505YNZ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF073UUX bam unfiltered alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YOO, ENCFF643CGH 858885972 ENCODE Processing Pipeline 2868786ec46560e5749cc4e87b9fe392 https://www.encodeproject.org/files/ENCFF073UUX/@@download/ENCFF073UUX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF215TDO bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YOO, ENCFF643CGH 573011085 ENCODE Processing Pipeline 4ed107a1933fa1398e19d7f2d5e5552f https://www.encodeproject.org/files/ENCFF215TDO/@@download/ENCFF215TDO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF040MZK bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YOM, ENCFF643CGH 810735836 ENCODE Processing Pipeline bdaacde521afefa9db075e602f1d84f9 https://www.encodeproject.org/files/ENCFF040MZK/@@download/ENCFF040MZK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF376DQB bam unfiltered alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YOM, ENCFF643CGH 1281609402 ENCODE Processing Pipeline e4ff5e65f3501ae8cb18c0555fdfdd2c https://www.encodeproject.org/files/ENCFF376DQB/@@download/ENCFF376DQB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500TMA bam unfiltered alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YOO, ENCFF807MUK 854928621 ENCODE Processing Pipeline 694d9dd57c9a5841406096c235255065 https://www.encodeproject.org/files/ENCFF500TMA/@@download/ENCFF500TMA.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF120JUM bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YOO, ENCFF807MUK 573500407 ENCODE Processing Pipeline bd09f0c0798000d350ec5272f95fc614 https://www.encodeproject.org/files/ENCFF120JUM/@@download/ENCFF120JUM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF698GEX bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YOM, ENCFF807MUK 811119361 ENCODE Processing Pipeline 66906a4f30561d0155ca35e9f45a9aae https://www.encodeproject.org/files/ENCFF698GEX/@@download/ENCFF698GEX.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF626NOR bam unfiltered alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YOM, ENCFF807MUK 1274496254 ENCODE Processing Pipeline 48f09b2e474a951bc6e20e17b2eff813 https://www.encodeproject.org/files/ENCFF626NOR/@@download/ENCFF626NOR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF578HCR bigWig signal p-value ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF215TDO 418142032 ENCODE Processing Pipeline daf5db62f0b06acbe01c815d7a32a01e https://www.encodeproject.org/files/ENCFF578HCR/@@download/ENCFF578HCR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF680NRO bigWig signal p-value ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF040MZK 458990074 ENCODE Processing Pipeline 451f158169628f7ab10b648fc1910daa https://www.encodeproject.org/files/ENCFF680NRO/@@download/ENCFF680NRO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF203MMG bigWig signal p-value ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF040MZK, ENCFF215TDO 572717274 ENCODE Processing Pipeline d44bf4ddd63146ad07a774d3c4010456 https://www.encodeproject.org/files/ENCFF203MMG/@@download/ENCFF203MMG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF889HNR bigWig fold change over control ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF040MZK 393545061 ENCODE Processing Pipeline d70d560495a461788fb1b3accc59bd6a https://www.encodeproject.org/files/ENCFF889HNR/@@download/ENCFF889HNR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF349YBX bigWig fold change over control ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF040MZK, ENCFF215TDO 602017180 ENCODE Processing Pipeline 9276ea91f719d08d47550160f9d5e148 https://www.encodeproject.org/files/ENCFF349YBX/@@download/ENCFF349YBX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF943IJB bigWig fold change over control ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF215TDO 310894183 ENCODE Processing Pipeline 02e81bf8df96fdafe0aa1a8332cc80af https://www.encodeproject.org/files/ENCFF943IJB/@@download/ENCFF943IJB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392JBV bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF215TDO 4803335 ENCODE Processing Pipeline e891117a4f0d2ce918017f7d7a9012ea https://www.encodeproject.org/files/ENCFF392JBV/@@download/ENCFF392JBV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF886RXI bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF718UFW 10941624 ENCODE Processing Pipeline e56378314d1a0d16a050b030e676a020 https://www.encodeproject.org/files/ENCFF886RXI/@@download/ENCFF886RXI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF718UFW bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF040MZK 4660940 ENCODE Processing Pipeline 1a9d561713b44a41317872fad7b08e1b https://www.encodeproject.org/files/ENCFF718UFW/@@download/ENCFF718UFW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF008XRW bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF392JBV 10748814 ENCODE Processing Pipeline cb808c67616983d3ce32969445144d30 https://www.encodeproject.org/files/ENCFF008XRW/@@download/ENCFF008XRW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF569HGB bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145AYG 13324431 ENCODE Processing Pipeline 1c2fff3c4c6fcf2ddb8437f7b4dd4e4d https://www.encodeproject.org/files/ENCFF569HGB/@@download/ENCFF569HGB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145AYG bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF040MZK, ENCFF215TDO 5614865 ENCODE Processing Pipeline e04d5a715e6631ebc52fdcfb1cd924df https://www.encodeproject.org/files/ENCFF145AYG/@@download/ENCFF145AYG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF115DVM bed narrowPeak conservative idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145AYG, ENCFF392JBV, ENCFF419RSJ, ENCFF718UFW 92303 ENCODE Processing Pipeline b0d6b3ddfaa8c7712061d7f3ea595c6e https://www.encodeproject.org/files/ENCFF115DVM/@@download/ENCFF115DVM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509EPP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF478HYJ 235804 ENCODE Processing Pipeline 69cf682c49b70823be058bb1dd0b2b3f https://www.encodeproject.org/files/ENCFF509EPP/@@download/ENCFF509EPP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF391AXM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF115DVM 222988 ENCODE Processing Pipeline 1070e170653ab8860fe769103380a3f1 https://www.encodeproject.org/files/ENCFF391AXM/@@download/ENCFF391AXM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF478HYJ bed narrowPeak optimal idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145AYG, ENCFF392JBV, ENCFF419RSJ, ENCFF718UFW 100269 ENCODE Processing Pipeline 853e928757ef6c6998959eb6e2068ef3 https://www.encodeproject.org/files/ENCFF478HYJ/@@download/ENCFF478HYJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF802KBK bigWig signal p-value ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF698GEX, ENCFF710NTS 423985138 ENCODE Processing Pipeline cb137ea6dce89b27102722af1c3b689b https://www.encodeproject.org/files/ENCFF802KBK/@@download/ENCFF802KBK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF087PUW bigWig fold change over control ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF698GEX, ENCFF710NTS 393934685 ENCODE Processing Pipeline fd833ef3d7e17d6ea59f2ace428ae0b2 https://www.encodeproject.org/files/ENCFF087PUW/@@download/ENCFF087PUW.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF224MEV bigWig signal p-value ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120JUM, ENCFF710NTS 523639359 ENCODE Processing Pipeline d6d5b89e38bd53d9707ae16b2c6e7633 https://www.encodeproject.org/files/ENCFF224MEV/@@download/ENCFF224MEV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF701UPA bigWig signal p-value ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120JUM, ENCFF698GEX, ENCFF710NTS 580784730 ENCODE Processing Pipeline 6d05b2acb5c2df695de70401a524112d https://www.encodeproject.org/files/ENCFF701UPA/@@download/ENCFF701UPA.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF592EHF bigWig fold change over control ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120JUM, ENCFF710NTS 323992436 ENCODE Processing Pipeline 04027b931c8ceff781aefe86d9bfe73a https://www.encodeproject.org/files/ENCFF592EHF/@@download/ENCFF592EHF.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF050ZBY bigWig fold change over control ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120JUM, ENCFF698GEX, ENCFF710NTS 618142431 ENCODE Processing Pipeline ea7127af7ad9ceb5b78ef3f55ff09c99 https://www.encodeproject.org/files/ENCFF050ZBY/@@download/ENCFF050ZBY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF220GLK bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF698GEX, ENCFF710NTS 4742038 ENCODE Processing Pipeline eed575974928ae29e2b021dd1f635577 https://www.encodeproject.org/files/ENCFF220GLK/@@download/ENCFF220GLK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614RPL bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120JUM, ENCFF710NTS 4859422 ENCODE Processing Pipeline c2be15b33254bff97f9bbe443bdf3db2 https://www.encodeproject.org/files/ENCFF614RPL/@@download/ENCFF614RPL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF123HUT bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120JUM, ENCFF698GEX, ENCFF710NTS 5619346 ENCODE Processing Pipeline 41407496caad251a815f422fa7b4267d https://www.encodeproject.org/files/ENCFF123HUT/@@download/ENCFF123HUT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF265XSB bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF220GLK 10982338 ENCODE Processing Pipeline 3f111bea65f9269f852b6bcc453ca881 https://www.encodeproject.org/files/ENCFF265XSB/@@download/ENCFF265XSB.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF089CSQ bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF614RPL 10757250 ENCODE Processing Pipeline e5cfe181997281664fb4f54167de9c52 https://www.encodeproject.org/files/ENCFF089CSQ/@@download/ENCFF089CSQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF905DYM bigBed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123HUT 13319785 ENCODE Processing Pipeline 1387dc257d879b412476c5c7db6a8318 https://www.encodeproject.org/files/ENCFF905DYM/@@download/ENCFF905DYM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF334QGA bed narrowPeak conservative idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF123HUT, ENCFF220GLK, ENCFF614RPL 88818 ENCODE Processing Pipeline 07ed23126b136456eb0fd11b0987c036 https://www.encodeproject.org/files/ENCFF334QGA/@@download/ENCFF334QGA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF667NOP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF334QGA 217133 ENCODE Processing Pipeline 603f066ad61b6208cae1802589cc62b2 https://www.encodeproject.org/files/ENCFF667NOP/@@download/ENCFF667NOP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF156WRH bed narrowPeak optimal idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF123HUT, ENCFF220GLK, ENCFF614RPL 94699 ENCODE Processing Pipeline 3412d376260c85c185a7efc28f868928 https://www.encodeproject.org/files/ENCFF156WRH/@@download/ENCFF156WRH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF132EKK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156WRH 226533 ENCODE Processing Pipeline 308bba0625cbdc574a8df6ee6681c3a9 https://www.encodeproject.org/files/ENCFF132EKK/@@download/ENCFF132EKK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YIV bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPD 750500628 Sherman Weissman, Yale 068c9dfdac46a48adfa15914236f4f65 https://www.encodeproject.org/files/ENCFF000YIV/@@download/ENCFF000YIV.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YIW bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPB 753808848 Sherman Weissman, Yale 2d85196f2b8ae99dafa4b5be13d59138 https://www.encodeproject.org/files/ENCFF000YIW/@@download/ENCFF000YIW.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YIX bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VML 147524 Sherman Weissman, Yale 65dde275739f7d85bfcd610cbd6404cc https://www.encodeproject.org/files/ENCFF000YIX/@@download/ENCFF000YIX.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YIY bigWig signal ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 377609530 Sherman Weissman, Yale 4731f41ea882b97c5f11fca541b1b1ba https://www.encodeproject.org/files/ENCFF000YIY/@@download/ENCFF000YIY.bigWig hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPB fastq reads ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 571921191 Sherman Weissman, Yale aa409af331c4d61ef33532f3e1fa015c https://www.encodeproject.org/files/ENCFF000YPB/@@download/ENCFF000YPB.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPD fastq reads ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 560329386 Sherman Weissman, Yale b529754e8aa20ec5c88e44464def032a https://www.encodeproject.org/files/ENCFF000YPD/@@download/ENCFF000YPD.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VML bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 40087 Sherman Weissman, Yale 7e467221e96e897de9d5ee0f78142062 https://www.encodeproject.org/files/ENCFF001VML/@@download/ENCFF001VML.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CVZ bed narrowPeak optimal idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 127221 ENCODE Consortium Analysis Working Group 8086db1d6870a8c9418dacda7340d3a7 https://www.encodeproject.org/files/ENCFF002CVZ/@@download/ENCFF002CVZ.bed.gz hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF223KPX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVZ 324594 ENCODE Consortium dd35f8868c30e8d42475c6134cc51e6c https://www.encodeproject.org/files/ENCFF223KPX/@@download/ENCFF223KPX.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF573AFD bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPB, ENCFF807MUK 316755688 ENCODE Processing Pipeline efdf0a88ac53a41e74580da63d6fd871 https://www.encodeproject.org/files/ENCFF573AFD/@@download/ENCFF573AFD.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF921WKF bam unfiltered alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPB, ENCFF807MUK 754531565 ENCODE Processing Pipeline 074f81ab86b04c3131b868847f5bfa60 https://www.encodeproject.org/files/ENCFF921WKF/@@download/ENCFF921WKF.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF924WXS bam unfiltered alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPD, ENCFF807MUK 751365268 ENCODE Processing Pipeline 177bc7a0e6674e50706e7c8039146668 https://www.encodeproject.org/files/ENCFF924WXS/@@download/ENCFF924WXS.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF780UCC bam unfiltered alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPD, ENCFF643CGH 753840207 ENCODE Processing Pipeline 5973e6ef184a45be17b0314d9f3a7137 https://www.encodeproject.org/files/ENCFF780UCC/@@download/ENCFF780UCC.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF278VAK bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPD, ENCFF807MUK 326296803 ENCODE Processing Pipeline 855ff33490dec4a0bbdeeb84b740385a https://www.encodeproject.org/files/ENCFF278VAK/@@download/ENCFF278VAK.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF206CUX bam unfiltered alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPB, ENCFF643CGH 756890727 ENCODE Processing Pipeline 4f0bdf66d521917450f4b4be3fe59131 https://www.encodeproject.org/files/ENCFF206CUX/@@download/ENCFF206CUX.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF479JUJ bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPD, ENCFF643CGH 325870408 ENCODE Processing Pipeline cdff2f6b917aa19b3b199ba769a42c49 https://www.encodeproject.org/files/ENCFF479JUJ/@@download/ENCFF479JUJ.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF643UCP bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPB, ENCFF643CGH 316335022 ENCODE Processing Pipeline 012e4fcbecbddaf4e5e771617b3ccbd7 https://www.encodeproject.org/files/ENCFF643UCP/@@download/ENCFF643UCP.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF164RSZ bigWig signal p-value ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278VAK, ENCFF998GMZ 248759313 ENCODE Processing Pipeline 0e61f30f68782a87539380fdaac42371 https://www.encodeproject.org/files/ENCFF164RSZ/@@download/ENCFF164RSZ.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF222TAZ bigWig signal p-value ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF643UCP 244170090 ENCODE Processing Pipeline a4a25fdae877351fd6ae6dc6681352e6 https://www.encodeproject.org/files/ENCFF222TAZ/@@download/ENCFF222TAZ.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF521FIU bigWig signal p-value ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF573AFD, ENCFF998GMZ 244147012 ENCODE Processing Pipeline 178bcd7a1494e914f630d6954e4403db https://www.encodeproject.org/files/ENCFF521FIU/@@download/ENCFF521FIU.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF936EYE bigWig signal p-value ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF479JUJ 247685960 ENCODE Processing Pipeline b7ebca8d61ddf915d6afe14616dc7607 https://www.encodeproject.org/files/ENCFF936EYE/@@download/ENCFF936EYE.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF471VRG bigWig signal p-value ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278VAK, ENCFF573AFD, ENCFF998GMZ 312642943 ENCODE Processing Pipeline 0749e7871998124ec45e799904cbce99 https://www.encodeproject.org/files/ENCFF471VRG/@@download/ENCFF471VRG.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF563IXZ bigWig fold change over control ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF573AFD, ENCFF998GMZ 149195415 ENCODE Processing Pipeline 9fc3f2a51c675bcd35b29ae6ef3fc5c0 https://www.encodeproject.org/files/ENCFF563IXZ/@@download/ENCFF563IXZ.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF964PBT bigWig signal p-value ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF479JUJ, ENCFF643UCP 313271598 ENCODE Processing Pipeline 722dd3329eadc807ef92741f7ff67eb9 https://www.encodeproject.org/files/ENCFF964PBT/@@download/ENCFF964PBT.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF890KNX bigWig fold change over control ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF643UCP 150965641 ENCODE Processing Pipeline 103dd88f819972e385d5e30e8469a2bc https://www.encodeproject.org/files/ENCFF890KNX/@@download/ENCFF890KNX.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF086SNW bigWig fold change over control ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278VAK, ENCFF998GMZ 154972260 ENCODE Processing Pipeline 61c52c811c60c395c2537e306d079d1f https://www.encodeproject.org/files/ENCFF086SNW/@@download/ENCFF086SNW.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF876WNI bigWig fold change over control ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF479JUJ 159478504 ENCODE Processing Pipeline c90eead81debb787bc8eb6fab0f20002 https://www.encodeproject.org/files/ENCFF876WNI/@@download/ENCFF876WNI.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF040RHL bigWig fold change over control ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF479JUJ, ENCFF643UCP 275126619 ENCODE Processing Pipeline 757d683e6be41af322366c5c7796ca12 https://www.encodeproject.org/files/ENCFF040RHL/@@download/ENCFF040RHL.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF041POZ bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278VAK, ENCFF998GMZ 2532916 ENCODE Processing Pipeline adf8683858265f42f5494538a255772b https://www.encodeproject.org/files/ENCFF041POZ/@@download/ENCFF041POZ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF930BTW bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF643UCP 2255268 ENCODE Processing Pipeline 99288f81d434c9ce6c578533335c1349 https://www.encodeproject.org/files/ENCFF930BTW/@@download/ENCFF930BTW.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF288LTO bigWig fold change over control ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278VAK, ENCFF573AFD, ENCFF998GMZ 270856519 ENCODE Processing Pipeline afa2e5ac392d44060be1eddded3ac40a https://www.encodeproject.org/files/ENCFF288LTO/@@download/ENCFF288LTO.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF829NXG bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF573AFD, ENCFF998GMZ 2294461 ENCODE Processing Pipeline 3fe26a31a072923e0bb45a0d9b66931c https://www.encodeproject.org/files/ENCFF829NXG/@@download/ENCFF829NXG.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF280ZZP bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF479JUJ 2519763 ENCODE Processing Pipeline fc18a979408a276e8afea3fed57bbbf0 https://www.encodeproject.org/files/ENCFF280ZZP/@@download/ENCFF280ZZP.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF862SHH bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF479JUJ, ENCFF643UCP 4417992 ENCODE Processing Pipeline aae811a8393cd976142ffe82526b9e1e https://www.encodeproject.org/files/ENCFF862SHH/@@download/ENCFF862SHH.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF950PCT bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF930BTW 4883197 ENCODE Processing Pipeline 6e8b22dd4de1810daa78d4dcb4caa3ce https://www.encodeproject.org/files/ENCFF950PCT/@@download/ENCFF950PCT.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF906HKG bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF041POZ 5290460 ENCODE Processing Pipeline 7e851377f21b4625407d00cbaf9ddc14 https://www.encodeproject.org/files/ENCFF906HKG/@@download/ENCFF906HKG.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF699EVP bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF280ZZP 5268837 ENCODE Processing Pipeline c8b7c9d60c4be4d04ece511715da1036 https://www.encodeproject.org/files/ENCFF699EVP/@@download/ENCFF699EVP.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF605EZB bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278VAK, ENCFF573AFD, ENCFF998GMZ 4408438 ENCODE Processing Pipeline b063d9eb04e8363aae6bea84354936ef https://www.encodeproject.org/files/ENCFF605EZB/@@download/ENCFF605EZB.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF053ZIX bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF829NXG 4891841 ENCODE Processing Pipeline c92f93ab82f868d1a76fc2cd51386d8c https://www.encodeproject.org/files/ENCFF053ZIX/@@download/ENCFF053ZIX.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF507HSS bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF862SHH 10629557 ENCODE Processing Pipeline 1292d161d5ce70b98f1001af5520bdba https://www.encodeproject.org/files/ENCFF507HSS/@@download/ENCFF507HSS.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF576HJU bigBed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF605EZB 10622330 ENCODE Processing Pipeline 47fdfc98c43479a3d3d7cc1d1827101c https://www.encodeproject.org/files/ENCFF576HJU/@@download/ENCFF576HJU.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF952NFV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF893WBV 183378 ENCODE Processing Pipeline 2431b0aa75c6f8cd3138bbc3c6238ca1 https://www.encodeproject.org/files/ENCFF952NFV/@@download/ENCFF952NFV.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF893WBV bed narrowPeak conservative idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF041POZ, ENCFF605EZB, ENCFF829NXG 82401 ENCODE Processing Pipeline 2d14742f5c29fbcf0d4581e73d7c260d https://www.encodeproject.org/files/ENCFF893WBV/@@download/ENCFF893WBV.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF385TGU bed narrowPeak conservative idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280ZZP, ENCFF419RSJ, ENCFF862SHH, ENCFF930BTW 87491 ENCODE Processing Pipeline 275a50be81d82024d510faf668ec44f9 https://www.encodeproject.org/files/ENCFF385TGU/@@download/ENCFF385TGU.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF360QAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF385TGU 190581 ENCODE Processing Pipeline cb5bba7d4da505d32902db17cf26a4bc https://www.encodeproject.org/files/ENCFF360QAQ/@@download/ENCFF360QAQ.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF573GQX bed narrowPeak optimal idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF041POZ, ENCFF605EZB, ENCFF829NXG 84349 ENCODE Processing Pipeline abed910a74ad73f3c1db21033f7275f3 https://www.encodeproject.org/files/ENCFF573GQX/@@download/ENCFF573GQX.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF032UMW bed narrowPeak optimal idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF280ZZP, ENCFF419RSJ, ENCFF862SHH, ENCFF930BTW 90781 ENCODE Processing Pipeline fa444e84dbaab69ed24a22454f4b9bc9 https://www.encodeproject.org/files/ENCFF032UMW/@@download/ENCFF032UMW.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF184IIH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF573GQX 186064 ENCODE Processing Pipeline bf8e22219d8eeeb231a76aca16431528 https://www.encodeproject.org/files/ENCFF184IIH/@@download/ENCFF184IIH.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF650TQK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF032UMW 194592 ENCODE Processing Pipeline 44ffee2ecc384ebd6d3082f17e168f99 https://www.encodeproject.org/files/ENCFF650TQK/@@download/ENCFF650TQK.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF760LCQ fastq reads ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF681PIN 4709682270 Michael Snyder, Stanford a5e1a3a387a499e6f03a918fdef39b0c SRA:SRR5111172 https://www.encodeproject.org/files/ENCFF760LCQ/@@download/ENCFF760LCQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF236YCR/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF681PIN fastq reads ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF760LCQ 4808139370 Michael Snyder, Stanford bb7a43f863d4f276a00be5f74eb31714 SRA:SRR5111172 https://www.encodeproject.org/files/ENCFF681PIN/@@download/ENCFF681PIN.fastq.gz Illumina HiSeq 2000 /files/ENCFF113QAJ/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF301GRJ fastq reads ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF671VDI 5093519411 Michael Snyder, Stanford 6d59a9dcd5562c4a7f79f43ed4a93bb9 SRA:SRR5111171 https://www.encodeproject.org/files/ENCFF301GRJ/@@download/ENCFF301GRJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF113QAJ/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF671VDI fastq reads ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF301GRJ 5016866400 Michael Snyder, Stanford 67607cc20060adda9913fbe23bc6a0ee SRA:SRR5111171 https://www.encodeproject.org/files/ENCFF671VDI/@@download/ENCFF671VDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF236YCR/ released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF810QEF bam unfiltered alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF301GRJ, ENCFF643CGH, ENCFF671VDI 9947197970 ENCODE Processing Pipeline 721b9e7ffa7c1de1de1323ac3c40b666 https://www.encodeproject.org/files/ENCFF810QEF/@@download/ENCFF810QEF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF237ZDR bam unfiltered alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF643CGH, ENCFF681PIN, ENCFF760LCQ 9512516676 ENCODE Processing Pipeline 610080e0e7501a9aa62f4fc6da5b16d6 https://www.encodeproject.org/files/ENCFF237ZDR/@@download/ENCFF237ZDR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF908PSF bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF301GRJ, ENCFF643CGH, ENCFF671VDI 4943284835 ENCODE Processing Pipeline 53b2b92154aa27a57f1aeafacbbe49f5 https://www.encodeproject.org/files/ENCFF908PSF/@@download/ENCFF908PSF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF786GEU bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF643CGH, ENCFF681PIN, ENCFF760LCQ 5239368489 ENCODE Processing Pipeline b8e11b22441b5e9426aebdd17c9a0ad5 https://www.encodeproject.org/files/ENCFF786GEU/@@download/ENCFF786GEU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF408CVK bam unfiltered alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF681PIN, ENCFF760LCQ, ENCFF807MUK 9510898074 ENCODE Processing Pipeline f76a337a6da5b419137659f64d9457fe https://www.encodeproject.org/files/ENCFF408CVK/@@download/ENCFF408CVK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF611JAR bam unfiltered alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF301GRJ, ENCFF671VDI, ENCFF807MUK 9949072793 ENCODE Processing Pipeline 8f07b982fe360e95a5f87116e2f95be1 https://www.encodeproject.org/files/ENCFF611JAR/@@download/ENCFF611JAR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF946QHS bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF681PIN, ENCFF760LCQ, ENCFF807MUK 5237217688 ENCODE Processing Pipeline 332940efc9d891bd23175438c4ea6f38 https://www.encodeproject.org/files/ENCFF946QHS/@@download/ENCFF946QHS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF926NTQ bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF301GRJ, ENCFF671VDI, ENCFF807MUK 4941656595 ENCODE Processing Pipeline e29dc92d9c3ed4ab2b3796d531643f0f https://www.encodeproject.org/files/ENCFF926NTQ/@@download/ENCFF926NTQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF017EUL bigWig signal p-value ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF194ZKK, ENCFF946QHS 937159876 ENCODE Processing Pipeline 752a83b0375b9aa1bd254fc94ccf2a3a https://www.encodeproject.org/files/ENCFF017EUL/@@download/ENCFF017EUL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF122VXS bigWig signal p-value ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF194ZKK, ENCFF926NTQ 1031770028 ENCODE Processing Pipeline c5ff7aba17e484d653298e1111bf7fd9 https://www.encodeproject.org/files/ENCFF122VXS/@@download/ENCFF122VXS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF578QDL bigWig signal p-value ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF194ZKK, ENCFF926NTQ, ENCFF946QHS 1307017371 ENCODE Processing Pipeline 26025295df96c3a5a8214d51fb053b06 https://www.encodeproject.org/files/ENCFF578QDL/@@download/ENCFF578QDL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF840IQJ bigWig fold change over control ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF194ZKK, ENCFF946QHS 1219621706 ENCODE Processing Pipeline a76f6ef76f718da29185e9b292925d58 https://www.encodeproject.org/files/ENCFF840IQJ/@@download/ENCFF840IQJ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF616AYR bigWig fold change over control ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF194ZKK, ENCFF926NTQ 1147919758 ENCODE Processing Pipeline 3b8bf49a708945a29755d636d19954f9 https://www.encodeproject.org/files/ENCFF616AYR/@@download/ENCFF616AYR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF040AXK bigWig fold change over control ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF194ZKK, ENCFF926NTQ, ENCFF946QHS 1779273450 ENCODE Processing Pipeline 9808b01f3d300da7b1e0f86d0112db63 https://www.encodeproject.org/files/ENCFF040AXK/@@download/ENCFF040AXK.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF317YJY bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF194ZKK, ENCFF946QHS 6910926 ENCODE Processing Pipeline bc842742eea8b78ce621aa042251e9e5 https://www.encodeproject.org/files/ENCFF317YJY/@@download/ENCFF317YJY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF090MIJ bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF194ZKK, ENCFF926NTQ 6779574 ENCODE Processing Pipeline 76f18f74c6f5c1d498ea8e93cac8bd80 https://www.encodeproject.org/files/ENCFF090MIJ/@@download/ENCFF090MIJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF319MZU bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF194ZKK, ENCFF926NTQ, ENCFF946QHS 7277111 ENCODE Processing Pipeline f2fde630471c906bf9bf9899216f9439 https://www.encodeproject.org/files/ENCFF319MZU/@@download/ENCFF319MZU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF697YNS bigBed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF317YJY 13168984 ENCODE Processing Pipeline 6e8beb4c8895edb93afef1ca2457c537 https://www.encodeproject.org/files/ENCFF697YNS/@@download/ENCFF697YNS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF538LCU bigBed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF090MIJ 13185422 ENCODE Processing Pipeline 5a2a89800bab38f9facfe8c7054a7e42 https://www.encodeproject.org/files/ENCFF538LCU/@@download/ENCFF538LCU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF659NTS bigBed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF319MZU 13075249 ENCODE Processing Pipeline e6c984a40bfaa98149c1200465641738 https://www.encodeproject.org/files/ENCFF659NTS/@@download/ENCFF659NTS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF837QOK bed narrowPeak conservative idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF090MIJ, ENCFF317YJY, ENCFF319MZU 285691 ENCODE Processing Pipeline b30e85edba612b39d8afdc6536d78f53 https://www.encodeproject.org/files/ENCFF837QOK/@@download/ENCFF837QOK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF044MKB bigBed narrowPeak conservative idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF837QOK 688126 ENCODE Processing Pipeline 9e1bf4edfc54301b5f10f2ae0d1486e5 https://www.encodeproject.org/files/ENCFF044MKB/@@download/ENCFF044MKB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF859NPS bed narrowPeak optimal idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF090MIJ, ENCFF317YJY, ENCFF319MZU 384718 ENCODE Processing Pipeline 1fbe7c256ff4719ad463455c1b853fa6 https://www.encodeproject.org/files/ENCFF859NPS/@@download/ENCFF859NPS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF131FTY bigBed narrowPeak optimal idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF859NPS 872155 ENCODE Processing Pipeline 3c7c88bce55643da0fc6d92f704afa7a https://www.encodeproject.org/files/ENCFF131FTY/@@download/ENCFF131FTY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF226SMB bigWig signal p-value ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF276OII, ENCFF786GEU 1149732861 ENCODE Processing Pipeline 17a830df3465e2d0c12b26938069e970 https://www.encodeproject.org/files/ENCFF226SMB/@@download/ENCFF226SMB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF742TSW bigWig signal p-value ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF276OII, ENCFF908PSF 1236552540 ENCODE Processing Pipeline 8ca15ee097dc25c9ffbeee2db10953d7 https://www.encodeproject.org/files/ENCFF742TSW/@@download/ENCFF742TSW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF107JGG bigWig signal p-value ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF276OII, ENCFF786GEU, ENCFF908PSF 1308193025 ENCODE Processing Pipeline b0be2585f326610f3383d00488e085fc https://www.encodeproject.org/files/ENCFF107JGG/@@download/ENCFF107JGG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF091ZKY bigWig fold change over control ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF276OII, ENCFF786GEU 1210900930 ENCODE Processing Pipeline f87d2f0397314e9755271c22206d91a2 https://www.encodeproject.org/files/ENCFF091ZKY/@@download/ENCFF091ZKY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF600XSQ bigWig fold change over control ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF276OII, ENCFF908PSF 1145571038 ENCODE Processing Pipeline 4b2b0e9cfcf2de8f254fabaf37ab32ea https://www.encodeproject.org/files/ENCFF600XSQ/@@download/ENCFF600XSQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF204RHD bigWig fold change over control ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF276OII, ENCFF786GEU, ENCFF908PSF 1780833372 ENCODE Processing Pipeline 55843213744c910b235332ec5afa6278 https://www.encodeproject.org/files/ENCFF204RHD/@@download/ENCFF204RHD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF299KOW bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF276OII, ENCFF908PSF 6688176 ENCODE Processing Pipeline f676b20ce412da6e8b9e340d7f53da69 https://www.encodeproject.org/files/ENCFF299KOW/@@download/ENCFF299KOW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF690WII bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF276OII, ENCFF786GEU 6814944 ENCODE Processing Pipeline 5e99e3c6e54adee64d4b1d570f283d5b https://www.encodeproject.org/files/ENCFF690WII/@@download/ENCFF690WII.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF475VMR bed narrowPeak optimal idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF299KOW, ENCFF419RSJ, ENCFF690WII, ENCFF818TCS 393206 ENCODE Processing Pipeline ea26658f9dc7224f020f0594840f0d6a https://www.encodeproject.org/files/ENCFF475VMR/@@download/ENCFF475VMR.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF818TCS bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF276OII, ENCFF786GEU, ENCFF908PSF 7260754 ENCODE Processing Pipeline 78a49cabbf12a3cdecb106003614425f https://www.encodeproject.org/files/ENCFF818TCS/@@download/ENCFF818TCS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF027OYY bigBed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF299KOW 13220311 ENCODE Processing Pipeline 11bbffd7f0d36c160ef8c70662361ee8 https://www.encodeproject.org/files/ENCFF027OYY/@@download/ENCFF027OYY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF981NYL bigBed narrowPeak conservative idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF783GDC 693845 ENCODE Processing Pipeline edfcedd4eb36aa10ca419b278196a011 https://www.encodeproject.org/files/ENCFF981NYL/@@download/ENCFF981NYL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF783GDC bed narrowPeak conservative idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF299KOW, ENCFF419RSJ, ENCFF690WII, ENCFF818TCS 287867 ENCODE Processing Pipeline 04572d458b9c94a27d85d0324a0280b3 https://www.encodeproject.org/files/ENCFF783GDC/@@download/ENCFF783GDC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF736RGU bigBed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF690WII 13183053 ENCODE Processing Pipeline 32fac392a687813949eb735dbccc70d5 https://www.encodeproject.org/files/ENCFF736RGU/@@download/ENCFF736RGU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF330LTW bigBed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF818TCS 13089262 ENCODE Processing Pipeline 3020adb9bc72463402c761786947d681 https://www.encodeproject.org/files/ENCFF330LTW/@@download/ENCFF330LTW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF113ZXN bigBed narrowPeak optimal idr thresholded peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF475VMR 889514 ENCODE Processing Pipeline 98ff198c00d88171c9939fd2268539a4 https://www.encodeproject.org/files/ENCFF113ZXN/@@download/ENCFF113ZXN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF000XHK bam alignments ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XHZ 319839452 Sherman Weissman, Yale 9847b632d16de4f90b5c04c3c36b018e https://www.encodeproject.org/files/ENCFF000XHK/@@download/ENCFF000XHK.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XHL bam alignments ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XHY 295728292 Sherman Weissman, Yale 749e17b7bc9ae22a22b6261f8c5bda49 https://www.encodeproject.org/files/ENCFF000XHL/@@download/ENCFF000XHL.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XHM bigBed narrowPeak peaks ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIT 581025 Sherman Weissman, Yale 73dcd51fd0fdb3905b662e2b96db4eb8 https://www.encodeproject.org/files/ENCFF000XHM/@@download/ENCFF000XHM.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XHN bigWig signal ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 278719956 Sherman Weissman, Yale 367a79e3a8f1a2852af797a4db07cd30 https://www.encodeproject.org/files/ENCFF000XHN/@@download/ENCFF000XHN.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XHY fastq reads ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 230237162 Sherman Weissman, Yale cbe16d517185466752964fa68952c64a https://www.encodeproject.org/files/ENCFF000XHY/@@download/ENCFF000XHY.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XHZ fastq reads ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 247903821 Sherman Weissman, Yale 3e31d71fd1c172f63129c19c1e76a7ab https://www.encodeproject.org/files/ENCFF000XHZ/@@download/ENCFF000XHZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VIT bed narrowPeak peaks ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 254520 Sherman Weissman, Yale d90c2cae8dba4b9df5bdd2e4b67177ee https://www.encodeproject.org/files/ENCFF001VIT/@@download/ENCFF001VIT.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YSA bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 387697470 Michael Snyder, Stanford 3b03d916e103943359eb4a69904a98a1 https://www.encodeproject.org/files/ENCFF000YSA/@@download/ENCFF000YSA.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YSB bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNP 4228158 Michael Snyder, Stanford 93715cf7b1f56c0007efca4db6914471 https://www.encodeproject.org/files/ENCFF000YSB/@@download/ENCFF000YSB.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSC fastq reads ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 765311647 Michael Snyder, Stanford 358fe8daa1481229469bb3861d84fc63 https://www.encodeproject.org/files/ENCFF000YSC/@@download/ENCFF000YSC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSE fastq reads ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1254925256 Michael Snyder, Stanford 689f632f6e28b3c871882c82c016014a https://www.encodeproject.org/files/ENCFF000YSE/@@download/ENCFF000YSE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSG bigWig signal ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 398179429 Michael Snyder, Stanford c1a576be5d1311db7427473ae4d825e6 https://www.encodeproject.org/files/ENCFF000YSG/@@download/ENCFF000YSG.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YSH bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 678377047 Michael Snyder, Stanford 022146308a81871af81efe1e70bdf212 https://www.encodeproject.org/files/ENCFF000YSH/@@download/ENCFF000YSH.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VNP bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1778034 Michael Snyder, Stanford ab5e64ba56a9a195b2d841a044d1d435 https://www.encodeproject.org/files/ENCFF001VNP/@@download/ENCFF001VNP.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CWZ bed narrowPeak optimal idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 788904 ENCODE Consortium Analysis Working Group fc92c89774100278488f9604f2b41d14 https://www.encodeproject.org/files/ENCFF002CWZ/@@download/ENCFF002CWZ.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF568UCC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWZ 1499983 ENCODE Consortium 06559bea315a85e4b360deba834563e9 https://www.encodeproject.org/files/ENCFF568UCC/@@download/ENCFF568UCC.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF417DVP bam unfiltered alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YSC, ENCFF807MUK 874491669 ENCODE Processing Pipeline 4b18c253215d14541301f02dd2165c94 https://www.encodeproject.org/files/ENCFF417DVP/@@download/ENCFF417DVP.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF904GCT bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YSC, ENCFF807MUK 605438872 ENCODE Processing Pipeline 4a07762085c9b08727f7ef525be97716 https://www.encodeproject.org/files/ENCFF904GCT/@@download/ENCFF904GCT.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF663HKN bam unfiltered alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YSE, ENCFF807MUK 1382969301 ENCODE Processing Pipeline 162e017e784692a86166985900443597 https://www.encodeproject.org/files/ENCFF663HKN/@@download/ENCFF663HKN.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF532IBJ bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YSE, ENCFF807MUK 983873092 ENCODE Processing Pipeline cf48332cf63a44f7cb9ae94683c55485 https://www.encodeproject.org/files/ENCFF532IBJ/@@download/ENCFF532IBJ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF800MCM bam unfiltered alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YSC, ENCFF643CGH 877308906 ENCODE Processing Pipeline d52e73ebdce508f4bee54778bac83044 https://www.encodeproject.org/files/ENCFF800MCM/@@download/ENCFF800MCM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF624HEI bam unfiltered alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YSE, ENCFF643CGH 1387276557 ENCODE Processing Pipeline d307b5087b7451b0d5d2eee150420058 https://www.encodeproject.org/files/ENCFF624HEI/@@download/ENCFF624HEI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF400BSN bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YSC, ENCFF643CGH 604873580 ENCODE Processing Pipeline 26ab887f1bc2d49d0ec1515bd2bb4f19 https://www.encodeproject.org/files/ENCFF400BSN/@@download/ENCFF400BSN.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF321ZQU bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YSE, ENCFF643CGH 983134574 ENCODE Processing Pipeline 99aae290f9a2319d1f37728f91a552b6 https://www.encodeproject.org/files/ENCFF321ZQU/@@download/ENCFF321ZQU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF916YPG bigWig signal p-value ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF532IBJ, ENCFF710NTS, ENCFF904GCT 531304381 ENCODE Processing Pipeline 0428548b292fa8e28e24e3c948f314b2 https://www.encodeproject.org/files/ENCFF916YPG/@@download/ENCFF916YPG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF941ZJD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF774OPQ 1077144 ENCODE Processing Pipeline bf1ed1a1690325675163dfb9dce60eb3 https://www.encodeproject.org/files/ENCFF941ZJD/@@download/ENCFF941ZJD.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296KNV bigWig signal p-value ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532IBJ, ENCFF710NTS 507926239 ENCODE Processing Pipeline 32668e0f93ceab2fe595a3ce508c2c55 https://www.encodeproject.org/files/ENCFF296KNV/@@download/ENCFF296KNV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF709JGL bigWig fold change over control ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF532IBJ, ENCFF710NTS, ENCFF904GCT 660230961 ENCODE Processing Pipeline a91837e9a47f78f61ab2d5361b18ae8b https://www.encodeproject.org/files/ENCFF709JGL/@@download/ENCFF709JGL.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF223USW bigWig signal p-value ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF904GCT 402735467 ENCODE Processing Pipeline 40fe4d3e109c0fdecd7fc21df09ce3fc https://www.encodeproject.org/files/ENCFF223USW/@@download/ENCFF223USW.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF159IRT bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF904GCT 4828402 ENCODE Processing Pipeline 1aadafa6f0c66521cb34dd178f33868b https://www.encodeproject.org/files/ENCFF159IRT/@@download/ENCFF159IRT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF367HPL bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532IBJ, ENCFF710NTS 5543746 ENCODE Processing Pipeline f1705fbca0567dced7c801e7385cff4e https://www.encodeproject.org/files/ENCFF367HPL/@@download/ENCFF367HPL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF599WWQ bigWig fold change over control ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF904GCT 314492071 ENCODE Processing Pipeline f392607b6627c1d0b25b1999faed398a https://www.encodeproject.org/files/ENCFF599WWQ/@@download/ENCFF599WWQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF774OPQ bed narrowPeak conservative idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF159IRT, ENCFF367HPL, ENCFF844LUC 665238 ENCODE Processing Pipeline b3fafbad2fadd92c91718e6f7b0a8afc https://www.encodeproject.org/files/ENCFF774OPQ/@@download/ENCFF774OPQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF223ARA bigWig fold change over control ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532IBJ, ENCFF710NTS 460848116 ENCODE Processing Pipeline d91dc58cc3ab2eae9e9923607540d653 https://www.encodeproject.org/files/ENCFF223ARA/@@download/ENCFF223ARA.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF139PBV bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF367HPL 10982494 ENCODE Processing Pipeline 7fd6789ec08d1f4187b8409363b9f5c5 https://www.encodeproject.org/files/ENCFF139PBV/@@download/ENCFF139PBV.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF337DKJ bed narrowPeak optimal idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF159IRT, ENCFF367HPL, ENCFF844LUC 761693 ENCODE Processing Pipeline 3a2d773ef2c1c39f7ac48b0924f2febe https://www.encodeproject.org/files/ENCFF337DKJ/@@download/ENCFF337DKJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF844LUC bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF532IBJ, ENCFF710NTS, ENCFF904GCT 6005735 ENCODE Processing Pipeline fd8465215b193f6a6e08d11e0279e439 https://www.encodeproject.org/files/ENCFF844LUC/@@download/ENCFF844LUC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF833EDX bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159IRT 10560899 ENCODE Processing Pipeline 2bee13a0b4d864afbdc61c0e0fcfd4bc https://www.encodeproject.org/files/ENCFF833EDX/@@download/ENCFF833EDX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732RSA bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF844LUC 13206001 ENCODE Processing Pipeline 99163accd3105d70a11ccc69ddd9255a https://www.encodeproject.org/files/ENCFF732RSA/@@download/ENCFF732RSA.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF779WXV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF337DKJ 1198679 ENCODE Processing Pipeline 6f377538f701501b62a7edb69fd8edb5 https://www.encodeproject.org/files/ENCFF779WXV/@@download/ENCFF779WXV.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF428CGY bigWig signal p-value ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF321ZQU 540058606 ENCODE Processing Pipeline acf6920a0ed8a6bc747965c44591bad0 https://www.encodeproject.org/files/ENCFF428CGY/@@download/ENCFF428CGY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF067ULI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF213EYD 1570747 ENCODE Processing Pipeline 5648cd6a94c295a1ed6a6fbd42809831 https://www.encodeproject.org/files/ENCFF067ULI/@@download/ENCFF067ULI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF788JLS bigWig signal p-value ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF321ZQU, ENCFF400BSN 565409134 ENCODE Processing Pipeline 3496e50923ad0304bb05c02cfbe955f2 https://www.encodeproject.org/files/ENCFF788JLS/@@download/ENCFF788JLS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF115PVX bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF416NHC 10728774 ENCODE Processing Pipeline 31e6c3b9b136612e5adfed0983d32bdf https://www.encodeproject.org/files/ENCFF115PVX/@@download/ENCFF115PVX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF825PKD bigWig fold change over control ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF321ZQU 468448635 ENCODE Processing Pipeline 3e6906a1e64e734b362e601fc85501c0 https://www.encodeproject.org/files/ENCFF825PKD/@@download/ENCFF825PKD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF024PVQ bigWig fold change over control ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF321ZQU, ENCFF400BSN 677767966 ENCODE Processing Pipeline 3c0a67fcc376cc21d9d78a87a5f328b2 https://www.encodeproject.org/files/ENCFF024PVQ/@@download/ENCFF024PVQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF947ZIF bigWig signal p-value ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF400BSN 431640449 ENCODE Processing Pipeline e99a731252b9fe51bf997730a0add9e0 https://www.encodeproject.org/files/ENCFF947ZIF/@@download/ENCFF947ZIF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF206VHL bigWig fold change over control ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF400BSN 313370274 ENCODE Processing Pipeline 57a736cc557644861333313a85ade4b3 https://www.encodeproject.org/files/ENCFF206VHL/@@download/ENCFF206VHL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416NHC bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF400BSN 4962159 ENCODE Processing Pipeline d83714f13c2bdcd19e88bc46778b12b6 https://www.encodeproject.org/files/ENCFF416NHC/@@download/ENCFF416NHC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF587YQM bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF321ZQU 5592576 ENCODE Processing Pipeline 600e934e76282c503150b0a9653e6d36 https://www.encodeproject.org/files/ENCFF587YQM/@@download/ENCFF587YQM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF571YBD bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF321ZQU, ENCFF400BSN 6153337 ENCODE Processing Pipeline 7d2b966d4712f84fabbda31debaf2757 https://www.encodeproject.org/files/ENCFF571YBD/@@download/ENCFF571YBD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527HNJ bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF587YQM 13209644 ENCODE Processing Pipeline 8ff82dc8fe8f02c80c19c17680861544 https://www.encodeproject.org/files/ENCFF527HNJ/@@download/ENCFF527HNJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF826HDC bed narrowPeak conservative idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF416NHC, ENCFF419RSJ, ENCFF571YBD, ENCFF587YQM 711297 ENCODE Processing Pipeline 3ee82424a1d7aeb2fddde0e757dc775a https://www.encodeproject.org/files/ENCFF826HDC/@@download/ENCFF826HDC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF201ONX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF826HDC 1425173 ENCODE Processing Pipeline bb2bb176f9ec3403d6043aafcf5a2a98 https://www.encodeproject.org/files/ENCFF201ONX/@@download/ENCFF201ONX.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF044BSU bigBed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF571YBD 13393558 ENCODE Processing Pipeline d13d42d84bd58c8ee1d35ffda8c894f3 https://www.encodeproject.org/files/ENCFF044BSU/@@download/ENCFF044BSU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF213EYD bed narrowPeak optimal idr thresholded peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF416NHC, ENCFF419RSJ, ENCFF571YBD, ENCFF587YQM 808369 ENCODE Processing Pipeline 46a248a637663e0555402451943362c9 https://www.encodeproject.org/files/ENCFF213EYD/@@download/ENCFF213EYD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF469MGV fastq reads ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1102514127 Bradley Bernstein, Broad 58a9ce9599077048297ef03c364d8477 https://www.encodeproject.org/files/ENCFF469MGV/@@download/ENCFF469MGV.fastq.gz Illumina HiSeq 2500 /files/ENCFF295VZD/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF943NVH fastq reads ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 1 76 single-ended 1075136581 Bradley Bernstein, Broad 065b4ad21907132172c55423a87a1d16 https://www.encodeproject.org/files/ENCFF943NVH/@@download/ENCFF943NVH.fastq.gz Illumina HiSeq 2500 /files/ENCFF295VZD/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF723SME bam alignments ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF469MGV, ENCFF807MUK, ENCFF943NVH 1738930305 ENCODE Processing Pipeline af21953729a669ab04245053fdedca9d https://www.encodeproject.org/files/ENCFF723SME/@@download/ENCFF723SME.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF905IBK bam unfiltered alignments ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF469MGV, ENCFF807MUK, ENCFF943NVH 2079481706 ENCODE Processing Pipeline 8487c00db9ce4238c06b8027c7fb1ad0 https://www.encodeproject.org/files/ENCFF905IBK/@@download/ENCFF905IBK.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF789ZHS bam unfiltered alignments ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF469MGV, ENCFF643CGH, ENCFF943NVH 2083351978 ENCODE Processing Pipeline 0e321cc221e846f57fd297c98887f3a3 https://www.encodeproject.org/files/ENCFF789ZHS/@@download/ENCFF789ZHS.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF883LXG bam alignments ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF469MGV, ENCFF643CGH, ENCFF943NVH 1740690080 ENCODE Processing Pipeline 816f99313c5a1f603a505e1bd82a4fa3 https://www.encodeproject.org/files/ENCFF883LXG/@@download/ENCFF883LXG.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF359EME bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF025MZL 976445 ENCODE Processing Pipeline f4cd81fcf7bf9ba633cb76effca548b7 https://www.encodeproject.org/files/ENCFF359EME/@@download/ENCFF359EME.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF792VDM bed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF723SME, ENCFF959YHF 5873759 ENCODE Processing Pipeline 66c3988d5eb739b8b18b92b3b1f66dfd https://www.encodeproject.org/files/ENCFF792VDM/@@download/ENCFF792VDM.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF735OVI bigWig fold change over control ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF723SME, ENCFF959YHF 917983707 ENCODE Processing Pipeline fd6054da69d4ee51f7462a640218b6ab https://www.encodeproject.org/files/ENCFF735OVI/@@download/ENCFF735OVI.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF025MZL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF001TDO, ENCFF792VDM 538101 ENCODE Processing Pipeline babdd0c4a95c0c19681c56903a1c835b https://www.encodeproject.org/files/ENCFF025MZL/@@download/ENCFF025MZL.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF858JHC bigWig signal p-value ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF723SME, ENCFF959YHF 872246849 ENCODE Processing Pipeline 617c9135b70fbcff2aa56f1a916ca384 https://www.encodeproject.org/files/ENCFF858JHC/@@download/ENCFF858JHC.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF648DRQ bigBed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF792VDM 13820170 ENCODE Processing Pipeline e42b3278ef53b3554b155155e1c080bd https://www.encodeproject.org/files/ENCFF648DRQ/@@download/ENCFF648DRQ.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF249HWJ bigWig fold change over control ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF644ZVV, ENCFF883LXG 935220015 ENCODE Processing Pipeline 18e7da7c084f493728a622ee29df8ba3 https://www.encodeproject.org/files/ENCFF249HWJ/@@download/ENCFF249HWJ.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF415MRY bigWig signal p-value ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF644ZVV, ENCFF883LXG 1007678797 ENCODE Processing Pipeline 7fe86a28dc44a67c68b0bf8c48aea13e https://www.encodeproject.org/files/ENCFF415MRY/@@download/ENCFF415MRY.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF420POI bigBed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF627LTJ 13780245 ENCODE Processing Pipeline 8f4461cb45ef3831b64bdb4accfd5276 https://www.encodeproject.org/files/ENCFF420POI/@@download/ENCFF420POI.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF772GFY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF693MYU 958689 ENCODE Processing Pipeline ec83b263c44df240d30593eb924af46f https://www.encodeproject.org/files/ENCFF772GFY/@@download/ENCFF772GFY.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF627LTJ bed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF644ZVV, ENCFF883LXG 5829980 ENCODE Processing Pipeline 96cfacc79d5fc4272a0f9c1f0c96b368 https://www.encodeproject.org/files/ENCFF627LTJ/@@download/ENCFF627LTJ.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF693MYU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF419RSJ, ENCFF627LTJ 528106 ENCODE Processing Pipeline 0f9fbcf8f2d881e5cf9c738ab194fba9 https://www.encodeproject.org/files/ENCFF693MYU/@@download/ENCFF693MYU.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF000YFX bam alignments ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YGF 731339968 Kevin Struhl, HMS d49ce28e0bd1bfcd683d946548f6ffa3 https://www.encodeproject.org/files/ENCFF000YFX/@@download/ENCFF000YFX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFY bam alignments ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YGH 805597756 Kevin Struhl, HMS 4a9ff97cf0c0c9af4c9b4944d28948fd https://www.encodeproject.org/files/ENCFF000YFY/@@download/ENCFF000YFY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFZ bigBed narrowPeak peaks ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMA 101458 Kevin Struhl, HMS 04ecf5ed0a63ef1b882f716ef70058c4 https://www.encodeproject.org/files/ENCFF000YFZ/@@download/ENCFF000YFZ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGA bigWig signal ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 493792246 Kevin Struhl, HMS d5eca9316e3a7a79977525c21a2a80ac https://www.encodeproject.org/files/ENCFF000YGA/@@download/ENCFF000YGA.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YGB bam alignments ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YGI 783793273 Kevin Struhl, HMS f181d0b9cbddb4b386f11696bcbc5d0b https://www.encodeproject.org/files/ENCFF000YGB/@@download/ENCFF000YGB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGF fastq reads ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 547362279 Kevin Struhl, HMS 5746bf3784e9071760dade1f9a682202 https://www.encodeproject.org/files/ENCFF000YGF/@@download/ENCFF000YGF.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YGH fastq reads ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 607319145 Kevin Struhl, HMS 63175ee7a95f52a9cc7df9bf8848d18b https://www.encodeproject.org/files/ENCFF000YGH/@@download/ENCFF000YGH.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YGI fastq reads ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 592352509 Kevin Struhl, HMS d7308abd509e221c07a513f52f66cb7c https://www.encodeproject.org/files/ENCFF000YGI/@@download/ENCFF000YGI.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VMA bed narrowPeak peaks ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 8976 Kevin Struhl, HMS 77ddebdfd55e26dbf3ad35aa4d74749f https://www.encodeproject.org/files/ENCFF001VMA/@@download/ENCFF001VMA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CVP bed narrowPeak optimal idr thresholded peaks ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 14731 ENCODE Consortium Analysis Working Group b7736965c422593b231caef94ba62e82 https://www.encodeproject.org/files/ENCFF002CVP/@@download/ENCFF002CVP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF738LIL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVP 112706 ENCODE Consortium b5d34aea3ddd94233ae1bee20fc0bc50 https://www.encodeproject.org/files/ENCFF738LIL/@@download/ENCFF738LIL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF002DHL fastq reads ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 1 50 single-ended 996686942 Richard Myers, HAIB b2827a2f527f45758ba7a62863ff1691 SRA:SRR5338555 https://www.encodeproject.org/files/ENCFF002DHL/@@download/ENCFF002DHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000ODZ/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF002DHM fastq reads ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 1 50 single-ended 1635001607 Richard Myers, HAIB c756440820d77f095bb4d3d2883f0dcd SRA:SRR5338556 https://www.encodeproject.org/files/ENCFF002DHM/@@download/ENCFF002DHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OEB/ released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF430LJF bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF643CGH 1013519629 ENCODE Processing Pipeline fbd79848814cd9dcebc27fec1eed216f https://www.encodeproject.org/files/ENCFF430LJF/@@download/ENCFF430LJF.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF084LVF bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF807MUK 1013326044 ENCODE Processing Pipeline f8dd888b02a5cc4c19964761ea7e6c50 https://www.encodeproject.org/files/ENCFF084LVF/@@download/ENCFF084LVF.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF742KAV bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF807MUK 1719737259 ENCODE Processing Pipeline 084f3ac8421c4021957b56c42bf77a89 https://www.encodeproject.org/files/ENCFF742KAV/@@download/ENCFF742KAV.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF988HVR bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF643CGH 654294690 ENCODE Processing Pipeline 6ca05126bfff39ed58a87f863096f6fd https://www.encodeproject.org/files/ENCFF988HVR/@@download/ENCFF988HVR.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF806SMA bam unfiltered alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF643CGH 1723926167 ENCODE Processing Pipeline 7f5049f4570de9eace339433734522a4 https://www.encodeproject.org/files/ENCFF806SMA/@@download/ENCFF806SMA.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF249FIH bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF807MUK 647656900 ENCODE Processing Pipeline e08861b7b0201ccaea0152ccd609d4fa https://www.encodeproject.org/files/ENCFF249FIH/@@download/ENCFF249FIH.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF178WGW bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF643CGH 1117340209 ENCODE Processing Pipeline bfad364c812c67af39af421d4ca9e17a https://www.encodeproject.org/files/ENCFF178WGW/@@download/ENCFF178WGW.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF019XCK bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF807MUK 1113793425 ENCODE Processing Pipeline 073e9d0bb61f9448824841d3a048f55e https://www.encodeproject.org/files/ENCFF019XCK/@@download/ENCFF019XCK.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF613ANK bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 578637151 ENCODE Processing Pipeline 2b1bcd1bf2e894176582dd6ae64b8fe9 https://www.encodeproject.org/files/ENCFF613ANK/@@download/ENCFF613ANK.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF749IZH bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 359849070 ENCODE Processing Pipeline b444a8de26e9c475166093f8d1f3a0a3 https://www.encodeproject.org/files/ENCFF749IZH/@@download/ENCFF749IZH.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF887YID bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 637667768 ENCODE Processing Pipeline 1f8456b0f12ed634e06916284be6a813 https://www.encodeproject.org/files/ENCFF887YID/@@download/ENCFF887YID.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF185DQG bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 557844114 ENCODE Processing Pipeline bf745c556d018e1059ce2719381b4c58 https://www.encodeproject.org/files/ENCFF185DQG/@@download/ENCFF185DQG.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF043TMW bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF019XCK, ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 766601696 ENCODE Processing Pipeline f7451440f46dff9ee35b189f5efec266 https://www.encodeproject.org/files/ENCFF043TMW/@@download/ENCFF043TMW.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF636JXY bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 4461664 ENCODE Processing Pipeline 0c3f577bd1e330c847c578dcd8a09790 https://www.encodeproject.org/files/ENCFF636JXY/@@download/ENCFF636JXY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF116EXQ bed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF304VXR, ENCFF379IZI, ENCFF636JXY 145088 ENCODE Processing Pipeline 54561d7676f209c4accf47a9d8d8dbda https://www.encodeproject.org/files/ENCFF116EXQ/@@download/ENCFF116EXQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF304VXR bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 5449410 ENCODE Processing Pipeline 7960ea0f8df0aa0ce24f114984592100 https://www.encodeproject.org/files/ENCFF304VXR/@@download/ENCFF304VXR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF747TKJ bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF636JXY 9893491 ENCODE Processing Pipeline 48cfb9c7a1a6cf0797dede1e2d7fd87f https://www.encodeproject.org/files/ENCFF747TKJ/@@download/ENCFF747TKJ.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF340PXK bigBed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF627POZ 305709 ENCODE Processing Pipeline d3b087c771a667222fcd1f520d5019ce https://www.encodeproject.org/files/ENCFF340PXK/@@download/ENCFF340PXK.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF379IZI bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF019XCK, ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 5601405 ENCODE Processing Pipeline 18fad9dd859591145cdd2b05a1860678 https://www.encodeproject.org/files/ENCFF379IZI/@@download/ENCFF379IZI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF079HBN bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF304VXR 13155544 ENCODE Processing Pipeline 3eafb3122e130c41637ae81544808cc4 https://www.encodeproject.org/files/ENCFF079HBN/@@download/ENCFF079HBN.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF529FLT bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF019XCK, ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 748362824 ENCODE Processing Pipeline deca37d31e865daa91c298bd3873eab5 https://www.encodeproject.org/files/ENCFF529FLT/@@download/ENCFF529FLT.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF205MMG bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF379IZI 11174800 ENCODE Processing Pipeline baeb70d0cc5ed198efaaa26459721d33 https://www.encodeproject.org/files/ENCFF205MMG/@@download/ENCFF205MMG.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF627POZ bed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF304VXR, ENCFF379IZI, ENCFF636JXY 120904 ENCODE Processing Pipeline d9d4159d773eb0c2485be4b130402021 https://www.encodeproject.org/files/ENCFF627POZ/@@download/ENCFF627POZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF849NUO bigBed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF116EXQ 346314 ENCODE Processing Pipeline e23920d136591b1243a947ffd355217d https://www.encodeproject.org/files/ENCFF849NUO/@@download/ENCFF849NUO.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF840PEJ bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 574775724 ENCODE Processing Pipeline 8bfd7225685c5a5ebb1fb1fcfe2fa620 https://www.encodeproject.org/files/ENCFF840PEJ/@@download/ENCFF840PEJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF081KQA bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 783688920 ENCODE Processing Pipeline 80dceb7a7c61132147b31cb308d4cf9b https://www.encodeproject.org/files/ENCFF081KQA/@@download/ENCFF081KQA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF114WTO bigWig signal p-value ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ 649056328 ENCODE Processing Pipeline dff955842dc89ba38ce90fab0b343fc2 https://www.encodeproject.org/files/ENCFF114WTO/@@download/ENCFF114WTO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF497OLG bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 358816086 ENCODE Processing Pipeline 520f487d0175484ae3b61459586a2fc4 https://www.encodeproject.org/files/ENCFF497OLG/@@download/ENCFF497OLG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF556NUU bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ 562352955 ENCODE Processing Pipeline 8d20024b20d2d3f70748f07779149562 https://www.encodeproject.org/files/ENCFF556NUU/@@download/ENCFF556NUU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF381QHK bigWig fold change over control ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 737207663 ENCODE Processing Pipeline e8b10e7d90f35f73a882a8f4cecc5525 https://www.encodeproject.org/files/ENCFF381QHK/@@download/ENCFF381QHK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF775LYL bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ 5200828 ENCODE Processing Pipeline 4483d3930e49739e88fec409aed3a231 https://www.encodeproject.org/files/ENCFF775LYL/@@download/ENCFF775LYL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF281UYF bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF775LYL 13100369 ENCODE Processing Pipeline 31e18b72088190407fdd77036e564fd5 https://www.encodeproject.org/files/ENCFF281UYF/@@download/ENCFF281UYF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF555KBT bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF178WGW, ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 5372102 ENCODE Processing Pipeline 07e978f880df712f66bfb7ab8920c3fa https://www.encodeproject.org/files/ENCFF555KBT/@@download/ENCFF555KBT.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF703XUB bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF592GAR 9743013 ENCODE Processing Pipeline 5c2e1b01d0eeb09bd1b0261d5f391a37 https://www.encodeproject.org/files/ENCFF703XUB/@@download/ENCFF703XUB.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF592GAR bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF754WTG, ENCFF966AVZ, ENCFF988HVR 4317789 ENCODE Processing Pipeline e3e147247995b22b47e846c427fd193c https://www.encodeproject.org/files/ENCFF592GAR/@@download/ENCFF592GAR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF145CKY bigBed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF946ACA 359545 ENCODE Processing Pipeline 294e251f3771c433105f2d233dc08575 https://www.encodeproject.org/files/ENCFF145CKY/@@download/ENCFF145CKY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF626CRQ bigBed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF555KBT 11123659 ENCODE Processing Pipeline 0c0e472c6f145e8e60b822f7e3084bf6 https://www.encodeproject.org/files/ENCFF626CRQ/@@download/ENCFF626CRQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF453CIO bed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF555KBT, ENCFF592GAR, ENCFF775LYL 122236 ENCODE Processing Pipeline bdde6d54b6812f0f5abaa9045c8f8f61 https://www.encodeproject.org/files/ENCFF453CIO/@@download/ENCFF453CIO.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF782COJ bigBed narrowPeak conservative idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF453CIO 308442 ENCODE Processing Pipeline aef018deea221c4ba72b74a334df735c https://www.encodeproject.org/files/ENCFF782COJ/@@download/ENCFF782COJ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF946ACA bed narrowPeak optimal idr thresholded peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF555KBT, ENCFF592GAR, ENCFF775LYL 153113 ENCODE Processing Pipeline 3eb48d3f5e84af61257eedd43cb78961 https://www.encodeproject.org/files/ENCFF946ACA/@@download/ENCFF946ACA.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF000WSJ bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WTC 213833933 Peggy Farnham, USC 0df4ed3b73f7cd1644dcc69feeed7423 https://www.encodeproject.org/files/ENCFF000WSJ/@@download/ENCFF000WSJ.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WSK bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGU 773381 Peggy Farnham, USC c65d967cf353ca30dc78bf3d483ab200 https://www.encodeproject.org/files/ENCFF000WSK/@@download/ENCFF000WSK.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WSL bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WSX 172247360 Peggy Farnham, USC 37def9b9dc674e87d12cf58ed66ec335 https://www.encodeproject.org/files/ENCFF000WSL/@@download/ENCFF000WSL.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WSM bigWig signal ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 138652601 Peggy Farnham, USC f0647902389560c740a5cc1020a763a1 https://www.encodeproject.org/files/ENCFF000WSM/@@download/ENCFF000WSM.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WSX fastq reads ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 550165156 Peggy Farnham, USC a8646b58b41f67cf64986d6ee5715747 https://www.encodeproject.org/files/ENCFF000WSX/@@download/ENCFF000WSX.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WTC fastq reads ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 658657020 Peggy Farnham, USC 2da03836a706f0d2c29d767e561ff075 https://www.encodeproject.org/files/ENCFF000WTC/@@download/ENCFF000WTC.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VGU bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 265884 Peggy Farnham, USC 6c7d12e09da7f67e487cf9b3ea9d6079 https://www.encodeproject.org/files/ENCFF001VGU/@@download/ENCFF001VGU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CQW bed narrowPeak optimal idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 135363 ENCODE Consortium Analysis Working Group e1e47f33b91591dd047e4f47a93d81f4 https://www.encodeproject.org/files/ENCFF002CQW/@@download/ENCFF002CQW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF162SDW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQW 334856 ENCODE Consortium 960f31b0cffcb12e7850d06f80ee9f50 https://www.encodeproject.org/files/ENCFF162SDW/@@download/ENCFF162SDW.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF862SGN bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WSX, ENCFF807MUK 267517051 ENCODE Processing Pipeline 8c9cd6ad075b47b97b4c3a8615c3bcaa https://www.encodeproject.org/files/ENCFF862SGN/@@download/ENCFF862SGN.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF739JIG bam unfiltered alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WSX, ENCFF807MUK 570982287 ENCODE Processing Pipeline 953051e6c3629038f49e78b62fad462f https://www.encodeproject.org/files/ENCFF739JIG/@@download/ENCFF739JIG.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF727IMQ bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WSX, ENCFF643CGH 267244796 ENCODE Processing Pipeline fd822fa1ab8bfb3e578d122bddfae94a https://www.encodeproject.org/files/ENCFF727IMQ/@@download/ENCFF727IMQ.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF510AAR bam unfiltered alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WTC, ENCFF643CGH 804097621 ENCODE Processing Pipeline 420d7378967a946a4addec6d81d9812e https://www.encodeproject.org/files/ENCFF510AAR/@@download/ENCFF510AAR.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF623IQL bam unfiltered alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WSX, ENCFF643CGH 572091137 ENCODE Processing Pipeline 5849b675a1712bbca64b8909cefc996a https://www.encodeproject.org/files/ENCFF623IQL/@@download/ENCFF623IQL.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF188FUC bam unfiltered alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WTC, ENCFF807MUK 802890085 ENCODE Processing Pipeline bd2f16e35dabbd6f64387614311c1ef3 https://www.encodeproject.org/files/ENCFF188FUC/@@download/ENCFF188FUC.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF436RQJ bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WTC, ENCFF807MUK 249536211 ENCODE Processing Pipeline cb8ea9065fe8c184d32bfd5ae5b9cb7a https://www.encodeproject.org/files/ENCFF436RQJ/@@download/ENCFF436RQJ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF470LNU bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WTC, ENCFF643CGH 249258358 ENCODE Processing Pipeline d939cc76e4d29e9211a5b5d00300fcf8 https://www.encodeproject.org/files/ENCFF470LNU/@@download/ENCFF470LNU.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF845TLB bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436RQJ, ENCFF509ANO, ENCFF862SGN 6276633 ENCODE Processing Pipeline 76aa17e8113437d49e970ed45baed014 https://www.encodeproject.org/files/ENCFF845TLB/@@download/ENCFF845TLB.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF272XOY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF222TBM 358106 ENCODE Processing Pipeline 55a713e2cc41953e3ec17b1aefb76517 https://www.encodeproject.org/files/ENCFF272XOY/@@download/ENCFF272XOY.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF415PPX bigWig signal p-value ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436RQJ, ENCFF509ANO, ENCFF862SGN 488321040 ENCODE Processing Pipeline 7276a2f2be7783af1769a9309981dc43 https://www.encodeproject.org/files/ENCFF415PPX/@@download/ENCFF415PPX.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF435TXP bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436RQJ, ENCFF509ANO 5689682 ENCODE Processing Pipeline 5fd7cf69480e74f1c0dcfffea07d307b https://www.encodeproject.org/files/ENCFF435TXP/@@download/ENCFF435TXP.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF729DFZ bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF192EEU 9793323 ENCODE Processing Pipeline bd56c1f7ffddd8320c3bb779181fe364 https://www.encodeproject.org/files/ENCFF729DFZ/@@download/ENCFF729DFZ.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF312MVF bed narrowPeak conservative idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF192EEU, ENCFF435TXP, ENCFF845TLB 103728 ENCODE Processing Pipeline faec0f9a8cdc50a20416c7ebc0929cef https://www.encodeproject.org/files/ENCFF312MVF/@@download/ENCFF312MVF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF378WAB bigWig signal p-value ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF862SGN 372198554 ENCODE Processing Pipeline c2235278c1e4b869e355c5befcc09632 https://www.encodeproject.org/files/ENCFF378WAB/@@download/ENCFF378WAB.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF643SPE bigWig fold change over control ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436RQJ, ENCFF509ANO, ENCFF862SGN 371992069 ENCODE Processing Pipeline bd4d80e618404d347cdde391c71de08b https://www.encodeproject.org/files/ENCFF643SPE/@@download/ENCFF643SPE.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF222TBM bed narrowPeak optimal idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF192EEU, ENCFF435TXP, ENCFF845TLB 149159 ENCODE Processing Pipeline 82e163feba058a7f390e9c54fddff002 https://www.encodeproject.org/files/ENCFF222TBM/@@download/ENCFF222TBM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF434QRN bigWig fold change over control ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436RQJ, ENCFF509ANO 245642822 ENCODE Processing Pipeline ad8786d1fa0ed28ca67c5078fd8ec4d7 https://www.encodeproject.org/files/ENCFF434QRN/@@download/ENCFF434QRN.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF804AQL bigWig fold change over control ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF862SGN 190480514 ENCODE Processing Pipeline 6426abc3d777a425beb5c7271a63a04a https://www.encodeproject.org/files/ENCFF804AQL/@@download/ENCFF804AQL.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF192EEU bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF862SGN 4186356 ENCODE Processing Pipeline b1919c076f93736833441511b15a8c55 https://www.encodeproject.org/files/ENCFF192EEU/@@download/ENCFF192EEU.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF824NWW bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF435TXP 12732532 ENCODE Processing Pipeline e03ab3f6794bbc07701d7d5051cf2358 https://www.encodeproject.org/files/ENCFF824NWW/@@download/ENCFF824NWW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF231ZHA bigWig fold change over control ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF727IMQ 187405589 ENCODE Processing Pipeline b9a9c31012ddf6da45d96381b0d225ec https://www.encodeproject.org/files/ENCFF231ZHA/@@download/ENCFF231ZHA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF166YYZ bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF470LNU, ENCFF559ZZZ 5684276 ENCODE Processing Pipeline 496744fe29e7e2f904ee4824d64d616d https://www.encodeproject.org/files/ENCFF166YYZ/@@download/ENCFF166YYZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF516QCS bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF470LNU, ENCFF559ZZZ, ENCFF727IMQ 6273872 ENCODE Processing Pipeline ce3c5b547342bcd19c28058b88687f8d https://www.encodeproject.org/files/ENCFF516QCS/@@download/ENCFF516QCS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF632NBB bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF516QCS 12911131 ENCODE Processing Pipeline 614c71027dcc8689c9ca86749d0bf85f https://www.encodeproject.org/files/ENCFF632NBB/@@download/ENCFF632NBB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF814COF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF687AZW 232696 ENCODE Processing Pipeline ae5101abb4326609ad60fd47ff6e95dd https://www.encodeproject.org/files/ENCFF814COF/@@download/ENCFF814COF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF444WMR bigWig signal p-value ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436RQJ, ENCFF509ANO 420193224 ENCODE Processing Pipeline 7e2484cce446f3f90710785ee9dd6f43 https://www.encodeproject.org/files/ENCFF444WMR/@@download/ENCFF444WMR.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF187HTE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF312MVF 235248 ENCODE Processing Pipeline 1b5b09903cf87a68106138623f066d25 https://www.encodeproject.org/files/ENCFF187HTE/@@download/ENCFF187HTE.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF525BRL bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF845TLB 12907972 ENCODE Processing Pipeline a82b695a73710a14f52d2d9dfddd5dc2 https://www.encodeproject.org/files/ENCFF525BRL/@@download/ENCFF525BRL.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF226ZZK bigWig signal p-value ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF470LNU, ENCFF559ZZZ 377668946 ENCODE Processing Pipeline 63ef6bdd42cc742264cb6ff468365fa8 https://www.encodeproject.org/files/ENCFF226ZZK/@@download/ENCFF226ZZK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF479EQH bigWig fold change over control ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF470LNU, ENCFF559ZZZ 246901457 ENCODE Processing Pipeline 14e33326b59b5ed24140fb11b408162b https://www.encodeproject.org/files/ENCFF479EQH/@@download/ENCFF479EQH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF527OOF bigWig signal p-value ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF727IMQ 400689751 ENCODE Processing Pipeline 653469fa17a999b8e35e7ecef0291460 https://www.encodeproject.org/files/ENCFF527OOF/@@download/ENCFF527OOF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF310KJI bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF727IMQ 4120393 ENCODE Processing Pipeline 7bab9fe922fdbb5f2ea811dd153dafbb https://www.encodeproject.org/files/ENCFF310KJI/@@download/ENCFF310KJI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF687AZW bed narrowPeak conservative idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF166YYZ, ENCFF310KJI, ENCFF419RSJ, ENCFF516QCS 101936 ENCODE Processing Pipeline f7b03136cd2d2538084c6da9dbf6ab97 https://www.encodeproject.org/files/ENCFF687AZW/@@download/ENCFF687AZW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF482FLE bed narrowPeak optimal idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF166YYZ, ENCFF310KJI, ENCFF419RSJ, ENCFF516QCS 154307 ENCODE Processing Pipeline c194e676642456af60b15be219fee3c9 https://www.encodeproject.org/files/ENCFF482FLE/@@download/ENCFF482FLE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF998IEN bigWig signal p-value ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF470LNU, ENCFF559ZZZ, ENCFF727IMQ 420608774 ENCODE Processing Pipeline be5d1416bcdca334b076b77f773196f4 https://www.encodeproject.org/files/ENCFF998IEN/@@download/ENCFF998IEN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF029KIB bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF166YYZ 12731173 ENCODE Processing Pipeline ee6fa03ec522a3582cfa9ad4ab4a0de5 https://www.encodeproject.org/files/ENCFF029KIB/@@download/ENCFF029KIB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF393UDH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF482FLE 367999 ENCODE Processing Pipeline f2e501e543e7d5fc97afc8e8a557b724 https://www.encodeproject.org/files/ENCFF393UDH/@@download/ENCFF393UDH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF562PRB bigWig fold change over control ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF470LNU, ENCFF559ZZZ, ENCFF727IMQ 373144152 ENCODE Processing Pipeline 08b4a10e33281573d965f7e8cfd0b8d5 https://www.encodeproject.org/files/ENCFF562PRB/@@download/ENCFF562PRB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF540DXZ bigBed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF310KJI 9668162 ENCODE Processing Pipeline 2fa75b8fae11884e735b3bb4fcae55ef https://www.encodeproject.org/files/ENCFF540DXZ/@@download/ENCFF540DXZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000OFD bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OFJ 772696043 Richard Myers, HAIB 7a783a67ed7aea4391c5140cec7feafb https://www.encodeproject.org/files/ENCFF000OFD/@@download/ENCFF000OFD.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OFE bigBed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZC 220909 Richard Myers, HAIB c9806203496a12e12860c7536eb37844 https://www.encodeproject.org/files/ENCFF000OFE/@@download/ENCFF000OFE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OFF bigBed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZD 293416 Richard Myers, HAIB c82737450fb21c2dd936abae594674d1 https://www.encodeproject.org/files/ENCFF000OFF/@@download/ENCFF000OFF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OFG bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OFL 1056207172 Richard Myers, HAIB 0cfa41458350658b99695d66e74f9ba3 https://www.encodeproject.org/files/ENCFF000OFG/@@download/ENCFF000OFG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OFH bigWig raw signal ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 16966639 Richard Myers, HAIB 8c4886c59dd74161b3b27a1a7c3f3b2a https://www.encodeproject.org/files/ENCFF000OFH/@@download/ENCFF000OFH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OFI bigWig raw signal ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 19629509 Richard Myers, HAIB 235a464cdc48b70604c1b000c5fbd84f https://www.encodeproject.org/files/ENCFF000OFI/@@download/ENCFF000OFI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OFJ fastq reads ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 751296856 Richard Myers, HAIB e72ca7d9993269eb7f40a3880299f369 https://www.encodeproject.org/files/ENCFF000OFJ/@@download/ENCFF000OFJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OFL fastq reads ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1149210667 Richard Myers, HAIB 6cef27519dd36cce61c68876c5434aa6 https://www.encodeproject.org/files/ENCFF000OFL/@@download/ENCFF000OFL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001TZC bed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 1 99947 Richard Myers, HAIB 9a74ebe941abbbb80e37aa4a109fa516 https://www.encodeproject.org/files/ENCFF001TZC/@@download/ENCFF001TZC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TZD bed broadPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 1 143731 Richard Myers, HAIB a5699bcac0887e67d851580227431e93 https://www.encodeproject.org/files/ENCFF001TZD/@@download/ENCFF001TZD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF987KGX bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF643CGH 928599238 ENCODE Processing Pipeline ce3d6b02d6425a80730823b05685aed6 https://www.encodeproject.org/files/ENCFF987KGX/@@download/ENCFF987KGX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF988NFK bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF643CGH 370145429 ENCODE Processing Pipeline 51fbb4e7057f1a7f2c9e9d133a890ede https://www.encodeproject.org/files/ENCFF988NFK/@@download/ENCFF988NFK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF549ZSD bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF643CGH 1317909816 ENCODE Processing Pipeline 4237232bd51385c1289a610e0dd8ccd9 https://www.encodeproject.org/files/ENCFF549ZSD/@@download/ENCFF549ZSD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF274NWP bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF643CGH 494421293 ENCODE Processing Pipeline cbaddc5924c465b299a5240202eda3fc https://www.encodeproject.org/files/ENCFF274NWP/@@download/ENCFF274NWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF716XWN bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF807MUK 926597563 ENCODE Processing Pipeline 37896d1113b52d3878431b7f39fd0a30 https://www.encodeproject.org/files/ENCFF716XWN/@@download/ENCFF716XWN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF941CFE bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF807MUK 367145102 ENCODE Processing Pipeline 33c6f4dd9a1fba2f0af6b08cd389d665 https://www.encodeproject.org/files/ENCFF941CFE/@@download/ENCFF941CFE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF767IVC bam unfiltered alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF807MUK 1316049960 ENCODE Processing Pipeline f12e6fbe1f3ec368b1a9ba0a925d8213 https://www.encodeproject.org/files/ENCFF767IVC/@@download/ENCFF767IVC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF059RHP bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF807MUK 491787371 ENCODE Processing Pipeline 6b527a9b9959e6ba53107a29076f6443 https://www.encodeproject.org/files/ENCFF059RHP/@@download/ENCFF059RHP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF508BLG bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF988NFK 384071228 ENCODE Processing Pipeline 42f5f69cef70a07cdf59f2e39d738faa https://www.encodeproject.org/files/ENCFF508BLG/@@download/ENCFF508BLG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF016EVZ bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF274NWP, ENCFF488YYE 375840392 ENCODE Processing Pipeline 2c0bdbfa69274ab68476964cd725d7b0 https://www.encodeproject.org/files/ENCFF016EVZ/@@download/ENCFF016EVZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF824ZRN bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF988NFK 207309401 ENCODE Processing Pipeline 3c5ea5825c0fc8e87fa54563e4ff2740 https://www.encodeproject.org/files/ENCFF824ZRN/@@download/ENCFF824ZRN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF102YPZ bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF274NWP, ENCFF488YYE 227959702 ENCODE Processing Pipeline f56a4a6ecbf1b3eb4fbc5e2649b7a858 https://www.encodeproject.org/files/ENCFF102YPZ/@@download/ENCFF102YPZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF943CFP bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NWP, ENCFF488YYE, ENCFF988NFK 465355495 ENCODE Processing Pipeline aa594fa14949f514999c88a1afd4f6ef https://www.encodeproject.org/files/ENCFF943CFP/@@download/ENCFF943CFP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF821PRO bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NWP, ENCFF488YYE, ENCFF988NFK 385137945 ENCODE Processing Pipeline 3f56571162e6ff1c9d190ff1dc0d1518 https://www.encodeproject.org/files/ENCFF821PRO/@@download/ENCFF821PRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF153EEZ bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488YYE, ENCFF988NFK 4120340 ENCODE Processing Pipeline 6b49291e4998d775982002e09d08fc49 https://www.encodeproject.org/files/ENCFF153EEZ/@@download/ENCFF153EEZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF674UHS bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF274NWP, ENCFF488YYE 3943513 ENCODE Processing Pipeline eae49a1a6ce4fc3c2e46ab2630a598d9 https://www.encodeproject.org/files/ENCFF674UHS/@@download/ENCFF674UHS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF499YDX bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NWP, ENCFF488YYE, ENCFF988NFK 4636846 ENCODE Processing Pipeline 5451d6a3eb247952a829d18cfab30ec3 https://www.encodeproject.org/files/ENCFF499YDX/@@download/ENCFF499YDX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF526AWS bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF153EEZ 8279172 ENCODE Processing Pipeline 7973219511fed11702a67570bfdc7b72 https://www.encodeproject.org/files/ENCFF526AWS/@@download/ENCFF526AWS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF060KTS bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF674UHS 8092096 ENCODE Processing Pipeline 2f966bfc61e77250da6d696d485fe169 https://www.encodeproject.org/files/ENCFF060KTS/@@download/ENCFF060KTS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF902XWM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393NBO 337433 ENCODE Processing Pipeline 4350b3de192099efdb702d411e374319 https://www.encodeproject.org/files/ENCFF902XWM/@@download/ENCFF902XWM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF884JTF bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF499YDX 10852341 ENCODE Processing Pipeline db82c9b0ef565bf50642e3c8924a3d45 https://www.encodeproject.org/files/ENCFF884JTF/@@download/ENCFF884JTF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF393NBO bed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF153EEZ, ENCFF419RSJ, ENCFF499YDX, ENCFF674UHS 180402 ENCODE Processing Pipeline d6e3ec253234ff66db787119066f20f8 https://www.encodeproject.org/files/ENCFF393NBO/@@download/ENCFF393NBO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF829SEJ bed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF153EEZ, ENCFF419RSJ, ENCFF499YDX, ENCFF674UHS 218937 ENCODE Processing Pipeline f401739966d623a6f92819b4c260691b https://www.encodeproject.org/files/ENCFF829SEJ/@@download/ENCFF829SEJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF093MDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF829SEJ 466706 ENCODE Processing Pipeline 5da5df3835bc83b4c91ecf0931a370ac https://www.encodeproject.org/files/ENCFF093MDA/@@download/ENCFF093MDA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF256CKN bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 458188591 ENCODE Processing Pipeline fc7ee639d09bff2a0b883759d63e8940 https://www.encodeproject.org/files/ENCFF256CKN/@@download/ENCFF256CKN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF284KVO bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 422410374 ENCODE Processing Pipeline c74b7c08974d570d8678dc447afd7c36 https://www.encodeproject.org/files/ENCFF284KVO/@@download/ENCFF284KVO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF778UUN bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 206074373 ENCODE Processing Pipeline 1528f0cdad48466e9d27233362cac81c https://www.encodeproject.org/files/ENCFF778UUN/@@download/ENCFF778UUN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF266EQW bigWig signal p-value ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059RHP, ENCFF941CFE, ENCFF963CVB 465888352 ENCODE Processing Pipeline 64f4a859011b32b240fe40ca54f75c63 https://www.encodeproject.org/files/ENCFF266EQW/@@download/ENCFF266EQW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF964CXK bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059RHP, ENCFF941CFE, ENCFF963CVB 387561283 ENCODE Processing Pipeline 09a25df97e2abe196e546e54733928e8 https://www.encodeproject.org/files/ENCFF964CXK/@@download/ENCFF964CXK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF432PTE bigWig fold change over control ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 228501600 ENCODE Processing Pipeline e3735ebb13951ccae7d14b301d49b32b https://www.encodeproject.org/files/ENCFF432PTE/@@download/ENCFF432PTE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF252ZSU bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 3940300 ENCODE Processing Pipeline b4629a0f7ba60e27d60aa449fb412dbf https://www.encodeproject.org/files/ENCFF252ZSU/@@download/ENCFF252ZSU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF954YLZ bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF256FUR 8248275 ENCODE Processing Pipeline d1d2169ec4e0f3ac24e8c572fcf6d0fb https://www.encodeproject.org/files/ENCFF954YLZ/@@download/ENCFF954YLZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF256FUR bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 4078871 ENCODE Processing Pipeline 81e563b52b45fdedd7c92dcf39ed7fc2 https://www.encodeproject.org/files/ENCFF256FUR/@@download/ENCFF256FUR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF694IUT bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059RHP, ENCFF941CFE, ENCFF963CVB 4588688 ENCODE Processing Pipeline 43a131fc68eb4925ed29542c234ec0a8 https://www.encodeproject.org/files/ENCFF694IUT/@@download/ENCFF694IUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF318WPF bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF252ZSU 8077989 ENCODE Processing Pipeline 9800f5c363da3721e3adbccd12109513 https://www.encodeproject.org/files/ENCFF318WPF/@@download/ENCFF318WPF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF579KWB bigBed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF694IUT 10799509 ENCODE Processing Pipeline fba575ef91e91741f8cdfa835a6ddde5 https://www.encodeproject.org/files/ENCFF579KWB/@@download/ENCFF579KWB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF030NYG bed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252ZSU, ENCFF256FUR, ENCFF694IUT 198820 ENCODE Processing Pipeline bc1bb5c6d32dc9c8b9ce28c46e4b77e4 https://www.encodeproject.org/files/ENCFF030NYG/@@download/ENCFF030NYG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF927DFX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF030NYG 362819 ENCODE Processing Pipeline f20152027aad92323844ced947a75d60 https://www.encodeproject.org/files/ENCFF927DFX/@@download/ENCFF927DFX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF017JWE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703TFD 316653 ENCODE Processing Pipeline d31f83d4ce0b953f895b7bc1ae46431f https://www.encodeproject.org/files/ENCFF017JWE/@@download/ENCFF017JWE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF703TFD bed narrowPeak conservative idr thresholded peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF252ZSU, ENCFF256FUR, ENCFF694IUT 163460 ENCODE Processing Pipeline 9d9395018df41a7ca1e3141656ff3d8a https://www.encodeproject.org/files/ENCFF703TFD/@@download/ENCFF703TFD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF550QWK fastq reads ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1599562828 Richard Myers, HAIB 6854eaf779be373ddfcd36f695e52453 SRA:SRR5339645 https://www.encodeproject.org/files/ENCFF550QWK/@@download/ENCFF550QWK.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362DJJ fastq reads ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1978190743 Richard Myers, HAIB 7d56d794dd18ef6325eea3acd17d3e09 SRA:SRR5339646 https://www.encodeproject.org/files/ENCFF362DJJ/@@download/ENCFF362DJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF549ISQ bam unfiltered alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF550QWK, ENCFF643CGH 1670767722 ENCODE Processing Pipeline ab6b81c32da64ce5c9cf8d783b3bf65a https://www.encodeproject.org/files/ENCFF549ISQ/@@download/ENCFF549ISQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF657FRU bam unfiltered alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF362DJJ, ENCFF807MUK 2109601827 ENCODE Processing Pipeline b5648509775e6e7662e198538c029e08 https://www.encodeproject.org/files/ENCFF657FRU/@@download/ENCFF657FRU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF342QDZ bam unfiltered alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF362DJJ, ENCFF643CGH 2113210359 ENCODE Processing Pipeline f7d7a0b27676d94c5462309f8158b12c https://www.encodeproject.org/files/ENCFF342QDZ/@@download/ENCFF342QDZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF735WDN bam unfiltered alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF550QWK, ENCFF807MUK 1667753368 ENCODE Processing Pipeline b122e5fc4cea8229337da4445fa91a7c https://www.encodeproject.org/files/ENCFF735WDN/@@download/ENCFF735WDN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF473DTA bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF550QWK, ENCFF807MUK 1252564511 ENCODE Processing Pipeline 7067873cf874024c2962a637e2166219 https://www.encodeproject.org/files/ENCFF473DTA/@@download/ENCFF473DTA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683DUA bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF550QWK, ENCFF643CGH 1253134608 ENCODE Processing Pipeline a41c2d53f3067bc3c9e633f635120097 https://www.encodeproject.org/files/ENCFF683DUA/@@download/ENCFF683DUA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF213AJW bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF362DJJ, ENCFF643CGH 1552328848 ENCODE Processing Pipeline 896644e67b09f3b5256b2a456103d330 https://www.encodeproject.org/files/ENCFF213AJW/@@download/ENCFF213AJW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF630CIO bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF362DJJ, ENCFF807MUK 1551661424 ENCODE Processing Pipeline f70382bd96b8ecf1edec15f27f60d4da https://www.encodeproject.org/files/ENCFF630CIO/@@download/ENCFF630CIO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF571AFJ bigWig signal p-value ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF683DUA 636377590 ENCODE Processing Pipeline 23af123a4d0156414fe1532fec3c0561 https://www.encodeproject.org/files/ENCFF571AFJ/@@download/ENCFF571AFJ.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF694FZX bigWig signal p-value ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF213AJW 616944514 ENCODE Processing Pipeline 5fad17ac8c15cee27a07048474c5aac8 https://www.encodeproject.org/files/ENCFF694FZX/@@download/ENCFF694FZX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF171GOK bigWig signal p-value ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF213AJW, ENCFF683DUA 655300181 ENCODE Processing Pipeline 2b9e234986c0bce77eab0187484fb5e1 https://www.encodeproject.org/files/ENCFF171GOK/@@download/ENCFF171GOK.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454HCW bigWig fold change over control ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF683DUA 484994615 ENCODE Processing Pipeline 6c6e9d3567ac2aa9801fd0895d88729a https://www.encodeproject.org/files/ENCFF454HCW/@@download/ENCFF454HCW.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF971IZU bigWig fold change over control ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF213AJW, ENCFF683DUA 882216208 ENCODE Processing Pipeline db0bbb53cd11545839d077142c022e0b https://www.encodeproject.org/files/ENCFF971IZU/@@download/ENCFF971IZU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392VQU bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF683DUA 6289947 ENCODE Processing Pipeline a165657590edf0d0c43e2b379d51a64f https://www.encodeproject.org/files/ENCFF392VQU/@@download/ENCFF392VQU.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454DCX bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF213AJW, ENCFF683DUA 6916613 ENCODE Processing Pipeline 5bc61563b7859e867d90047ea7256f7d https://www.encodeproject.org/files/ENCFF454DCX/@@download/ENCFF454DCX.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF551LZM bigWig fold change over control ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF213AJW 579997436 ENCODE Processing Pipeline afa575754b3820ea6f0b1c99f1fc11a8 https://www.encodeproject.org/files/ENCFF551LZM/@@download/ENCFF551LZM.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF996SXJ bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF213AJW 6575874 ENCODE Processing Pipeline e07315215dfa7619a021b02715e61e73 https://www.encodeproject.org/files/ENCFF996SXJ/@@download/ENCFF996SXJ.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF532OVE bigBed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF996SXJ 12768430 ENCODE Processing Pipeline 41e5e46015db9704bd11c57685b8854b https://www.encodeproject.org/files/ENCFF532OVE/@@download/ENCFF532OVE.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF690TBO bed narrowPeak conservative idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF392VQU, ENCFF419RSJ, ENCFF454DCX, ENCFF996SXJ 848762 ENCODE Processing Pipeline abcce5b1b0f96d5ee5638e646a9cff48 https://www.encodeproject.org/files/ENCFF690TBO/@@download/ENCFF690TBO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF927MSN bigBed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF392VQU 12802664 ENCODE Processing Pipeline ea2714d44e32519ddd5dd8b7252f8e5c https://www.encodeproject.org/files/ENCFF927MSN/@@download/ENCFF927MSN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF508JNO bigBed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF454DCX 12747098 ENCODE Processing Pipeline 3e2549dec71272d3f294deab2891ef83 https://www.encodeproject.org/files/ENCFF508JNO/@@download/ENCFF508JNO.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF664WBS bigBed narrowPeak conservative idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF690TBO 1793367 ENCODE Processing Pipeline 1e2f2a4144d64be9390758c01a5d465c https://www.encodeproject.org/files/ENCFF664WBS/@@download/ENCFF664WBS.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF694MPE bed narrowPeak optimal idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF392VQU, ENCFF419RSJ, ENCFF454DCX, ENCFF996SXJ 879124 ENCODE Processing Pipeline 2f399499b14b0a5fbea239a6ab83f074 https://www.encodeproject.org/files/ENCFF694MPE/@@download/ENCFF694MPE.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF490ADW bigBed narrowPeak optimal idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF694MPE 1840986 ENCODE Processing Pipeline 9c31a52ce9dc3450b003392542d983ed https://www.encodeproject.org/files/ENCFF490ADW/@@download/ENCFF490ADW.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF484QGF bigWig signal p-value ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF473DTA 1197246514 ENCODE Processing Pipeline 639792ce0245dc34485b77aab492af5f https://www.encodeproject.org/files/ENCFF484QGF/@@download/ENCFF484QGF.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF833WGH bigWig signal p-value ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF630CIO 1325480140 ENCODE Processing Pipeline 8b27ea34d3ebe28b2798f8dfa554ab32 https://www.encodeproject.org/files/ENCFF833WGH/@@download/ENCFF833WGH.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF390ILX bigWig signal p-value ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF473DTA, ENCFF630CIO 1575061606 ENCODE Processing Pipeline 922a92fd16858eb28c0760143728179e https://www.encodeproject.org/files/ENCFF390ILX/@@download/ENCFF390ILX.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF081ZZB bigWig fold change over control ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF473DTA 911946726 ENCODE Processing Pipeline 4e72df92f64334ad3ba785be0ce1d530 https://www.encodeproject.org/files/ENCFF081ZZB/@@download/ENCFF081ZZB.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF456JTU bigWig fold change over control ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF630CIO 1033248694 ENCODE Processing Pipeline c6989502142c93b8d8ad847f20989450 https://www.encodeproject.org/files/ENCFF456JTU/@@download/ENCFF456JTU.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF800ABS bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF473DTA 6777657 ENCODE Processing Pipeline 24d3f3596cf651de03570cc005212e70 https://www.encodeproject.org/files/ENCFF800ABS/@@download/ENCFF800ABS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF154HFK bigWig fold change over control ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF473DTA, ENCFF630CIO 1480661892 ENCODE Processing Pipeline 09dbcd7db07139780d4d15f73e6a4243 https://www.encodeproject.org/files/ENCFF154HFK/@@download/ENCFF154HFK.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF737SVI bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF630CIO 6985024 ENCODE Processing Pipeline 4173e70969c9a3c2cbc0edd37faa1bd3 https://www.encodeproject.org/files/ENCFF737SVI/@@download/ENCFF737SVI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF179SXN bigBed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF800ABS 12779497 ENCODE Processing Pipeline 56b0d2f18a2416d6a9a85197343c4ea7 https://www.encodeproject.org/files/ENCFF179SXN/@@download/ENCFF179SXN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF570CWS bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF473DTA, ENCFF630CIO 7005397 ENCODE Processing Pipeline a09f54fbdf4e70cc962f2dfa15044553 https://www.encodeproject.org/files/ENCFF570CWS/@@download/ENCFF570CWS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF349HXG bigBed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF737SVI 12828311 ENCODE Processing Pipeline 6bec695829c9a0077191b67dbc09fdad https://www.encodeproject.org/files/ENCFF349HXG/@@download/ENCFF349HXG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF013VWT bigBed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF570CWS 12656373 ENCODE Processing Pipeline 38920d1718e900fbf819b7754d1b33a0 https://www.encodeproject.org/files/ENCFF013VWT/@@download/ENCFF013VWT.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF846JHX bigBed narrowPeak conservative idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF642CIM 1840623 ENCODE Processing Pipeline fabf06b7ce61fccef61f0978e0c592d7 https://www.encodeproject.org/files/ENCFF846JHX/@@download/ENCFF846JHX.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF558QCA bed narrowPeak optimal idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF570CWS, ENCFF737SVI, ENCFF800ABS 901087 ENCODE Processing Pipeline cb473e1414569cc6cdff2335c5312986 https://www.encodeproject.org/files/ENCFF558QCA/@@download/ENCFF558QCA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF642CIM bed narrowPeak conservative idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF570CWS, ENCFF737SVI, ENCFF800ABS 864655 ENCODE Processing Pipeline 715f3c8bf1b1a8295110869262101595 https://www.encodeproject.org/files/ENCFF642CIM/@@download/ENCFF642CIM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF535ZKW bigBed narrowPeak optimal idr thresholded peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF558QCA 1900035 ENCODE Processing Pipeline 527b23da4e17abda5e47b684105b5663 https://www.encodeproject.org/files/ENCFF535ZKW/@@download/ENCFF535ZKW.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000ONZ bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OOH 850879774 Richard Myers, HAIB c1ac9a6c1704b0cb36e171b40c7ed686 https://www.encodeproject.org/files/ENCFF000ONZ/@@download/ENCFF000ONZ.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000OOA bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OOO 822752988 Richard Myers, HAIB da00be6a3ac3f4a46c55eb59f43ab1db https://www.encodeproject.org/files/ENCFF000OOA/@@download/ENCFF000OOA.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000OOB bigBed broadPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBE 137141 Richard Myers, HAIB baac0fc0ab2248ff6535c783854e69ea https://www.encodeproject.org/files/ENCFF000OOB/@@download/ENCFF000OOB.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000OOC bigBed broadPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBF 247747 Richard Myers, HAIB 88be0ce9a746685f2f2bc8f142bb866c https://www.encodeproject.org/files/ENCFF000OOC/@@download/ENCFF000OOC.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000OOE bigWig raw signal ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 3668292 Richard Myers, HAIB 9faeef9ddc51d89834867c4c0d89c9b8 https://www.encodeproject.org/files/ENCFF000OOE/@@download/ENCFF000OOE.bigWig hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OOG bigWig raw signal ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 6845744 Richard Myers, HAIB 4162e33a11ba4d50ae4b33e95e3d15e0 https://www.encodeproject.org/files/ENCFF000OOG/@@download/ENCFF000OOG.bigWig hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OOH fastq reads ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 716007363 Richard Myers, HAIB 847e1dbb9998526e3c5d2f2e3fd85e88 https://www.encodeproject.org/files/ENCFF000OOH/@@download/ENCFF000OOH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000OOO fastq reads ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 671606980 Richard Myers, HAIB 41bf0fa63a7048de35a6375d067453cf https://www.encodeproject.org/files/ENCFF000OOO/@@download/ENCFF000OOO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF001UBE bed broadPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 45349 Richard Myers, HAIB edd096386f94c52c37336292ef0e8d5e https://www.encodeproject.org/files/ENCFF001UBE/@@download/ENCFF001UBE.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UBF bed broadPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 137154 Richard Myers, HAIB 63116adcf781c0621122d467745d951e https://www.encodeproject.org/files/ENCFF001UBF/@@download/ENCFF001UBF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CIV bed narrowPeak optimal idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 199154 ENCODE Consortium Analysis Working Group 0f9d09e6548dc05ba820e0b32d65e5bd https://www.encodeproject.org/files/ENCFF002CIV/@@download/ENCFF002CIV.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF041FRT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIV 490420 ENCODE Consortium 32613177ee143315cbea42db5377ffc7 https://www.encodeproject.org/files/ENCFF041FRT/@@download/ENCFF041FRT.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF777MZR bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOO, ENCFF643CGH 633218294 ENCODE Processing Pipeline 291ea6b55ad7d5d6679417ebdb8a3899 https://www.encodeproject.org/files/ENCFF777MZR/@@download/ENCFF777MZR.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF387QYI bam unfiltered alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOO, ENCFF643CGH 975544865 ENCODE Processing Pipeline 569a23db939abb6c714bf59cc46c0591 https://www.encodeproject.org/files/ENCFF387QYI/@@download/ENCFF387QYI.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF054DVF bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOH, ENCFF643CGH 675399316 ENCODE Processing Pipeline ad92fb6bcc297d0384e6bc9a726ad1fa https://www.encodeproject.org/files/ENCFF054DVF/@@download/ENCFF054DVF.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF326PXU bam unfiltered alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOH, ENCFF643CGH 1040776479 ENCODE Processing Pipeline 53a534150d69daa8a7251d30167b8baf https://www.encodeproject.org/files/ENCFF326PXU/@@download/ENCFF326PXU.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF310UUE bam unfiltered alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOH, ENCFF807MUK 1036953955 ENCODE Processing Pipeline a0fa347b84cc524b9149fbd3a5ea0c5b https://www.encodeproject.org/files/ENCFF310UUE/@@download/ENCFF310UUE.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF900GIN bam unfiltered alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOO, ENCFF807MUK 970817662 ENCODE Processing Pipeline d44597c844e0457d31e96e7ca6d1bbae https://www.encodeproject.org/files/ENCFF900GIN/@@download/ENCFF900GIN.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF343RXC bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOO, ENCFF807MUK 633583844 ENCODE Processing Pipeline 73a52bdcd92699ba4118a5e17dc7a82d https://www.encodeproject.org/files/ENCFF343RXC/@@download/ENCFF343RXC.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF998VOK bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOH, ENCFF807MUK 675646426 ENCODE Processing Pipeline f78b99c58fba62452c8188d470674c32 https://www.encodeproject.org/files/ENCFF998VOK/@@download/ENCFF998VOK.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF036DCA bigWig signal p-value ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF777MZR, ENCFF948LKH 518359618 ENCODE Processing Pipeline a8feecefe4fc430e6b60867eed4bede8 https://www.encodeproject.org/files/ENCFF036DCA/@@download/ENCFF036DCA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF961IXB bigWig signal p-value ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF054DVF, ENCFF948LKH 559365264 ENCODE Processing Pipeline 1ed03892cf0189343f2dd2585f8802f4 https://www.encodeproject.org/files/ENCFF961IXB/@@download/ENCFF961IXB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF621LNV bigWig fold change over control ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF777MZR, ENCFF948LKH 372803893 ENCODE Processing Pipeline f2b428eddae6a6115cac757a2eecd28f https://www.encodeproject.org/files/ENCFF621LNV/@@download/ENCFF621LNV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF464FML bigWig fold change over control ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF054DVF, ENCFF948LKH 393523175 ENCODE Processing Pipeline 037afe403d939c73ca546186f7521b1f https://www.encodeproject.org/files/ENCFF464FML/@@download/ENCFF464FML.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF559URO bigWig signal p-value ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054DVF, ENCFF777MZR, ENCFF948LKH 550958397 ENCODE Processing Pipeline e33cf67ada0d43e4a749f8f502a641d4 https://www.encodeproject.org/files/ENCFF559URO/@@download/ENCFF559URO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF341OGJ bigWig fold change over control ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054DVF, ENCFF777MZR, ENCFF948LKH 675521302 ENCODE Processing Pipeline 5788eee8195f8e6be69812fa4e4cf766 https://www.encodeproject.org/files/ENCFF341OGJ/@@download/ENCFF341OGJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF045DFZ bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF777MZR, ENCFF948LKH 4410502 ENCODE Processing Pipeline 8ba8b157f76f8815d7b58c13707f7a10 https://www.encodeproject.org/files/ENCFF045DFZ/@@download/ENCFF045DFZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF607AWB bigBed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF229UAJ 10714082 ENCODE Processing Pipeline b8c001201af4e60e8ff81bce8a55883a https://www.encodeproject.org/files/ENCFF607AWB/@@download/ENCFF607AWB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF229UAJ bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF054DVF, ENCFF948LKH 4053676 ENCODE Processing Pipeline 5ef90a1530e93ca17c324c62979d7cfd https://www.encodeproject.org/files/ENCFF229UAJ/@@download/ENCFF229UAJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF986ASC bigBed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF678RLO 11221293 ENCODE Processing Pipeline 00b504121a93e79ae9ab8cae7704f5cc https://www.encodeproject.org/files/ENCFF986ASC/@@download/ENCFF986ASC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF042WRS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004MNA 298223 ENCODE Processing Pipeline 4d1f012483e96f6793c7149f2c0bb7f7 https://www.encodeproject.org/files/ENCFF042WRS/@@download/ENCFF042WRS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF678RLO bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054DVF, ENCFF777MZR, ENCFF948LKH 4884681 ENCODE Processing Pipeline 3301882b37b432f5af5c4e437c07c7c2 https://www.encodeproject.org/files/ENCFF678RLO/@@download/ENCFF678RLO.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF663ZNI bigBed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF045DFZ 10754105 ENCODE Processing Pipeline 7f3885f18f183d1d86fe58cf28f08806 https://www.encodeproject.org/files/ENCFF663ZNI/@@download/ENCFF663ZNI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF004MNA bed narrowPeak conservative idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF045DFZ, ENCFF229UAJ, ENCFF419RSJ, ENCFF678RLO 161584 ENCODE Processing Pipeline 4e185ab5defde4572463e89b979baeac https://www.encodeproject.org/files/ENCFF004MNA/@@download/ENCFF004MNA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF477ANT bed narrowPeak optimal idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF045DFZ, ENCFF229UAJ, ENCFF419RSJ, ENCFF678RLO 205541 ENCODE Processing Pipeline 29679d804ec39d878f61ec037a69b2b7 https://www.encodeproject.org/files/ENCFF477ANT/@@download/ENCFF477ANT.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF469MQG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF477ANT 430064 ENCODE Processing Pipeline f5c1bb63fe54d89ad070b5a3afd6e9c6 https://www.encodeproject.org/files/ENCFF469MQG/@@download/ENCFF469MQG.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF112FMA bigWig fold change over control ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF343RXC, ENCFF356DXM 377811623 ENCODE Processing Pipeline ed98cb3fa17ed3aee0e693d1c443d27c https://www.encodeproject.org/files/ENCFF112FMA/@@download/ENCFF112FMA.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF707DMA bigWig signal p-value ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF343RXC, ENCFF356DXM 436315258 ENCODE Processing Pipeline 21ad8230b16b985372e07c828170b57b https://www.encodeproject.org/files/ENCFF707DMA/@@download/ENCFF707DMA.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF492OBY bigWig fold change over control ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF998VOK 393019782 ENCODE Processing Pipeline 78ddb023a3b72fcba3a07fde1141dddc https://www.encodeproject.org/files/ENCFF492OBY/@@download/ENCFF492OBY.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF785IOY bigWig signal p-value ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF343RXC, ENCFF356DXM, ENCFF998VOK 553382813 ENCODE Processing Pipeline 382c1ef1eb6621f75be8ee7a3d3ef8ff https://www.encodeproject.org/files/ENCFF785IOY/@@download/ENCFF785IOY.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF947PYO bigWig signal p-value ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF998VOK 560757838 ENCODE Processing Pipeline ac9a569bf665043dae37c6730b102f13 https://www.encodeproject.org/files/ENCFF947PYO/@@download/ENCFF947PYO.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF876WET bigWig fold change over control ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF343RXC, ENCFF356DXM, ENCFF998VOK 672762597 ENCODE Processing Pipeline 797da3735c5fe953bac6a9295e495f65 https://www.encodeproject.org/files/ENCFF876WET/@@download/ENCFF876WET.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF283VJO bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF998VOK 4029175 ENCODE Processing Pipeline 5fc856fc251562390858d357d9cc087c https://www.encodeproject.org/files/ENCFF283VJO/@@download/ENCFF283VJO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF647TLA bigBed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF283VJO 10585134 ENCODE Processing Pipeline 97ad20e517a2d8ac0f8e30d91ab53c5d https://www.encodeproject.org/files/ENCFF647TLA/@@download/ENCFF647TLA.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF235LAV bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF343RXC, ENCFF356DXM 4421970 ENCODE Processing Pipeline cdf743e9c35656e9ef860b647ccac743 https://www.encodeproject.org/files/ENCFF235LAV/@@download/ENCFF235LAV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF404KJM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF420ASF 364123 ENCODE Processing Pipeline fa268fd9146f1ad27568e203fe6f9b4d https://www.encodeproject.org/files/ENCFF404KJM/@@download/ENCFF404KJM.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF375CPS bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF343RXC, ENCFF356DXM, ENCFF998VOK 5013167 ENCODE Processing Pipeline 1ad655b537009e90df07cd778b9c3863 https://www.encodeproject.org/files/ENCFF375CPS/@@download/ENCFF375CPS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF761FOJ bigBed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235LAV 10824517 ENCODE Processing Pipeline 84be7bcfa443fb1360c37d4ca1f51114 https://www.encodeproject.org/files/ENCFF761FOJ/@@download/ENCFF761FOJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF420ASF bed narrowPeak conservative idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF235LAV, ENCFF283VJO, ENCFF375CPS 164076 ENCODE Processing Pipeline f5490e345b531060da680218bec418bb https://www.encodeproject.org/files/ENCFF420ASF/@@download/ENCFF420ASF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF220IXP bed narrowPeak optimal idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF235LAV, ENCFF283VJO, ENCFF375CPS 205136 ENCODE Processing Pipeline 3264aafab10c53352fc8b19ad9cc0ac5 https://www.encodeproject.org/files/ENCFF220IXP/@@download/ENCFF220IXP.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF386IFH bigBed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF375CPS 11266291 ENCODE Processing Pipeline ec912bd7f0ab7146771269ed486fcdaf https://www.encodeproject.org/files/ENCFF386IFH/@@download/ENCFF386IFH.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF095FKI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF220IXP 426918 ENCODE Processing Pipeline 421abef9be20b442f8a4fcda119e460f https://www.encodeproject.org/files/ENCFF095FKI/@@download/ENCFF095FKI.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF002ECG fastq reads ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 1 36 single-ended 748279166 Michael Snyder, Stanford 4c1f79e3f617c8592e43ca239e12b590 SRA:SRR6214045 https://www.encodeproject.org/files/ENCFF002ECG/@@download/ENCFF002ECG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF002ECJ fastq reads ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 1 36 single-ended 874717845 Michael Snyder, Stanford 3a5b0e8cb53bcf5251771cbf09135a7b SRA:SRR6214046 https://www.encodeproject.org/files/ENCFF002ECJ/@@download/ENCFF002ECJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ABM/, /files/ENCFF002ABO/ released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF423JON bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECJ, ENCFF643CGH 744105552 ENCODE Processing Pipeline 07c5868da230928b5ecaf561eaea1965 https://www.encodeproject.org/files/ENCFF423JON/@@download/ENCFF423JON.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF079YWD bam unfiltered alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECJ, ENCFF643CGH 1095197277 ENCODE Processing Pipeline aa0971084a38aad6943bad40ace56a59 https://www.encodeproject.org/files/ENCFF079YWD/@@download/ENCFF079YWD.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF437SBN bam unfiltered alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECG, ENCFF643CGH 931416855 ENCODE Processing Pipeline df43d70851794952e6f2c0df571d957a https://www.encodeproject.org/files/ENCFF437SBN/@@download/ENCFF437SBN.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF014AEH bam unfiltered alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECJ, ENCFF807MUK 1088624446 ENCODE Processing Pipeline 09dc33bf7102592aab68e3a964835528 https://www.encodeproject.org/files/ENCFF014AEH/@@download/ENCFF014AEH.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF041BUF bam unfiltered alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECG, ENCFF807MUK 927399016 ENCODE Processing Pipeline 2e76a1a016dbf618eec1e5f8021ec12d https://www.encodeproject.org/files/ENCFF041BUF/@@download/ENCFF041BUF.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF496YWT bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECG, ENCFF643CGH 639811257 ENCODE Processing Pipeline cf55b81e4f9466a4e7474ee0cda59a5e https://www.encodeproject.org/files/ENCFF496YWT/@@download/ENCFF496YWT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF459ELU bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECG, ENCFF807MUK 640026456 ENCODE Processing Pipeline 9d73dc4b16391b8d35c48a6b7fe74dfe https://www.encodeproject.org/files/ENCFF459ELU/@@download/ENCFF459ELU.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF222SPO bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECJ, ENCFF807MUK 744308273 ENCODE Processing Pipeline 92a4216ff007138e20cc7b662990915b https://www.encodeproject.org/files/ENCFF222SPO/@@download/ENCFF222SPO.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF461JAV bigBed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF982EXB 11203965 ENCODE Processing Pipeline 5e52d170f107647e990b6fc38775c975 https://www.encodeproject.org/files/ENCFF461JAV/@@download/ENCFF461JAV.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF275HVA bigBed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF168LBA 397120 ENCODE Processing Pipeline 5d8be1c15d55449549c3acab874d1a6d https://www.encodeproject.org/files/ENCFF275HVA/@@download/ENCFF275HVA.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF516ERI bigBed narrowPeak conservative idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF342LTT 59982 ENCODE Processing Pipeline a1b8feefd70977a4303c09481f1a9b81 https://www.encodeproject.org/files/ENCFF516ERI/@@download/ENCFF516ERI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF044GLZ bigWig signal p-value ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF459ELU, ENCFF650GFB 465911796 ENCODE Processing Pipeline 9b144f91557295d03f4a517e48d9a7e9 https://www.encodeproject.org/files/ENCFF044GLZ/@@download/ENCFF044GLZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF759ZXO bigWig signal p-value ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF222SPO, ENCFF650GFB 454846224 ENCODE Processing Pipeline 055d999d7d103fc385802b095fa95195 https://www.encodeproject.org/files/ENCFF759ZXO/@@download/ENCFF759ZXO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF901FXZ bigWig fold change over control ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF459ELU, ENCFF650GFB 349253284 ENCODE Processing Pipeline 3b1f3763cb41f1039695d7454cb94c13 https://www.encodeproject.org/files/ENCFF901FXZ/@@download/ENCFF901FXZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF373BMC bigWig fold change over control ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF222SPO, ENCFF459ELU, ENCFF650GFB 622104447 ENCODE Processing Pipeline 080ad2bba9449e6d0d42b9392b4d670a https://www.encodeproject.org/files/ENCFF373BMC/@@download/ENCFF373BMC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF680TFE bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF222SPO, ENCFF650GFB 35461 ENCODE Processing Pipeline 467e98fe012f764f3105973c6d6244b0 https://www.encodeproject.org/files/ENCFF680TFE/@@download/ENCFF680TFE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF645FVG bigWig signal p-value ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF222SPO, ENCFF459ELU, ENCFF650GFB 622031753 ENCODE Processing Pipeline 0a30d081820501303e326f2ceb1d9cb3 https://www.encodeproject.org/files/ENCFF645FVG/@@download/ENCFF645FVG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF614PEH bigWig fold change over control ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF222SPO, ENCFF650GFB 387701599 ENCODE Processing Pipeline 9d5cd13221f29ae31cb45b2d95197e11 https://www.encodeproject.org/files/ENCFF614PEH/@@download/ENCFF614PEH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF168LBA bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF459ELU, ENCFF650GFB 155206 ENCODE Processing Pipeline a1853dc6335971ecb9914bc9c75b3622 https://www.encodeproject.org/files/ENCFF168LBA/@@download/ENCFF168LBA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF982EXB bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF222SPO, ENCFF459ELU, ENCFF650GFB 4823377 ENCODE Processing Pipeline e99c215d960a7959685f03b68cc8c426 https://www.encodeproject.org/files/ENCFF982EXB/@@download/ENCFF982EXB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF636PLD bigBed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF680TFE 113399 ENCODE Processing Pipeline 0bfb2555c104fe082a0345cc2b7affb4 https://www.encodeproject.org/files/ENCFF636PLD/@@download/ENCFF636PLD.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF342LTT bed narrowPeak conservative idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF168LBA, ENCFF680TFE, ENCFF982EXB 10554 ENCODE Processing Pipeline 1c0c04f7150f0e766c13bd325f0afa09 https://www.encodeproject.org/files/ENCFF342LTT/@@download/ENCFF342LTT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF835PFH bigBed narrowPeak optimal idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF617AHB 82016 ENCODE Processing Pipeline cc8d0aaa95b4dda4b4050ac1ea69e12a https://www.encodeproject.org/files/ENCFF835PFH/@@download/ENCFF835PFH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF617AHB bed narrowPeak optimal idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF001TDO, ENCFF168LBA, ENCFF680TFE, ENCFF982EXB 17167 ENCODE Processing Pipeline 2c2a17a597bd629f495146a50ff1ed9b https://www.encodeproject.org/files/ENCFF617AHB/@@download/ENCFF617AHB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF203PPE bigWig signal p-value ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF423JON, ENCFF449CRS 553612155 ENCODE Processing Pipeline b93107c03d5a9da73ab2de4ffbd73f55 https://www.encodeproject.org/files/ENCFF203PPE/@@download/ENCFF203PPE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF639TCI bigWig fold change over control ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF449CRS, ENCFF496YWT 349651985 ENCODE Processing Pipeline f4034bb6d431e95c595bbfa697c82390 https://www.encodeproject.org/files/ENCFF639TCI/@@download/ENCFF639TCI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF872HHX bigWig signal p-value ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF449CRS, ENCFF496YWT 481008982 ENCODE Processing Pipeline 01b8ee4ba1c425ab066562db5de9742c https://www.encodeproject.org/files/ENCFF872HHX/@@download/ENCFF872HHX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF975ICB bigWig signal p-value ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF423JON, ENCFF449CRS, ENCFF496YWT 626878063 ENCODE Processing Pipeline a53de976632aaaac50af0152e45d7184 https://www.encodeproject.org/files/ENCFF975ICB/@@download/ENCFF975ICB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF565PSO bigWig fold change over control ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF423JON, ENCFF449CRS 386703372 ENCODE Processing Pipeline ca9f156494da464e29329fd822a3ce18 https://www.encodeproject.org/files/ENCFF565PSO/@@download/ENCFF565PSO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF397LHN bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF449CRS, ENCFF496YWT 159751 ENCODE Processing Pipeline d485415a1713627fe307eb36c191530f https://www.encodeproject.org/files/ENCFF397LHN/@@download/ENCFF397LHN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF359GGR bigWig fold change over control ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF423JON, ENCFF449CRS, ENCFF496YWT 626874370 ENCODE Processing Pipeline 0462c2c030b8b88ab077a380aafb6a1a https://www.encodeproject.org/files/ENCFF359GGR/@@download/ENCFF359GGR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF300IBH bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF423JON, ENCFF449CRS 35564 ENCODE Processing Pipeline 42f9b49b6fc37e57d646d9627237db7f https://www.encodeproject.org/files/ENCFF300IBH/@@download/ENCFF300IBH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF823CDF bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF423JON, ENCFF449CRS, ENCFF496YWT 4544786 ENCODE Processing Pipeline 6a53621c45a74916a9d6772b57bdca7a https://www.encodeproject.org/files/ENCFF823CDF/@@download/ENCFF823CDF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF256XOI bigBed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF397LHN 412185 ENCODE Processing Pipeline 86fef0b10d54eae6485c7c9b0c5cbc38 https://www.encodeproject.org/files/ENCFF256XOI/@@download/ENCFF256XOI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF055AJJ bigBed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF823CDF 10979601 ENCODE Processing Pipeline fbe1f2ce1cf09c4360b3e7cde7582bc4 https://www.encodeproject.org/files/ENCFF055AJJ/@@download/ENCFF055AJJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF637ASD bigBed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF300IBH 113937 ENCODE Processing Pipeline 95c6ccd44a04e8f5b47750e5f3ce7cbf https://www.encodeproject.org/files/ENCFF637ASD/@@download/ENCFF637ASD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF061GVV bigBed narrowPeak conservative idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF708QCZ 60967 ENCODE Processing Pipeline c7b602316433e7c1b99046f1a10645c9 https://www.encodeproject.org/files/ENCFF061GVV/@@download/ENCFF061GVV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF261PAC bed narrowPeak optimal idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF300IBH, ENCFF397LHN, ENCFF419RSJ, ENCFF823CDF 19398 ENCODE Processing Pipeline af2dc72aff571e1c5f08b04b17140298 https://www.encodeproject.org/files/ENCFF261PAC/@@download/ENCFF261PAC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF708QCZ bed narrowPeak conservative idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF300IBH, ENCFF397LHN, ENCFF419RSJ, ENCFF823CDF 11275 ENCODE Processing Pipeline ac2ce794e37882bd87bfcecfde34e372 https://www.encodeproject.org/files/ENCFF708QCZ/@@download/ENCFF708QCZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF327XBJ bigBed narrowPeak optimal idr thresholded peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1, 2 ENCFF261PAC 85547 ENCODE Processing Pipeline 2491e6420ada88a289327e5a3c5b4045 https://www.encodeproject.org/files/ENCFF327XBJ/@@download/ENCFF327XBJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF411THN fastq reads ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF180UGD 2856871154 Michael Snyder, Stanford 6cea711b34f22e11a10bf7cc86cb9559 SRA:SRR6212645 https://www.encodeproject.org/files/ENCFF411THN/@@download/ENCFF411THN.fastq.gz Illumina HiSeq 4000 /files/ENCFF024EUM/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF180UGD fastq reads ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF411THN 3338924652 Michael Snyder, Stanford 2c38c36db0b70a2e58b048f3bf037c68 SRA:SRR6212645 https://www.encodeproject.org/files/ENCFF180UGD/@@download/ENCFF180UGD.fastq.gz Illumina HiSeq 4000 /files/ENCFF108WLC/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF148FGO bam unfiltered alignments ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF180UGD, ENCFF411THN, ENCFF807MUK 5853967148 ENCODE Processing Pipeline ed565d925f75567584245dd662549f8c https://www.encodeproject.org/files/ENCFF148FGO/@@download/ENCFF148FGO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF099SWT bam alignments ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF180UGD, ENCFF411THN, ENCFF643CGH 4629429489 ENCODE Processing Pipeline 547a47b445b9f7117a91371b5aa40ea6 https://www.encodeproject.org/files/ENCFF099SWT/@@download/ENCFF099SWT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF066IPF bam unfiltered alignments ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF180UGD, ENCFF411THN, ENCFF643CGH 5861838114 ENCODE Processing Pipeline 71169f90cdaecc85f2f7aa025246a5eb https://www.encodeproject.org/files/ENCFF066IPF/@@download/ENCFF066IPF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF889DFX bam alignments ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF180UGD, ENCFF411THN, ENCFF807MUK 4623774217 ENCODE Processing Pipeline db75ec542c3b34eb0dcf305293cf0496 https://www.encodeproject.org/files/ENCFF889DFX/@@download/ENCFF889DFX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF448QON bigBed narrowPeak peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF334LTK 11302092 ENCODE Processing Pipeline c237b8057f8e1a5cd96767127194d141 https://www.encodeproject.org/files/ENCFF448QON/@@download/ENCFF448QON.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF033NVC bigWig signal p-value ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF869LQO, ENCFF889DFX 1339039863 ENCODE Processing Pipeline 68556da43d0c277e631f7a53bf078d0c https://www.encodeproject.org/files/ENCFF033NVC/@@download/ENCFF033NVC.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF033XFJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF334LTK 259136 ENCODE Processing Pipeline c7144421205fb7f50e9da4ce3e261cb4 https://www.encodeproject.org/files/ENCFF033XFJ/@@download/ENCFF033XFJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF334LTK bed narrowPeak peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF869LQO, ENCFF889DFX 6345525 ENCODE Processing Pipeline a0f4f839fbd4b9be1a8d589ba4037700 https://www.encodeproject.org/files/ENCFF334LTK/@@download/ENCFF334LTK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF659PWI bigWig fold change over control ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF869LQO, ENCFF889DFX 1392569934 ENCODE Processing Pipeline 7f4c5df0e8a7f65901be159e021e05d3 https://www.encodeproject.org/files/ENCFF659PWI/@@download/ENCFF659PWI.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF971JQT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF033XFJ 502552 ENCODE Processing Pipeline 5714c770ed85237aca298d52186bcc63 https://www.encodeproject.org/files/ENCFF971JQT/@@download/ENCFF971JQT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF853KRE bigWig signal p-value ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF099SWT, ENCFF527GPC 1328306729 ENCODE Processing Pipeline aafca8219e0cb65b5f212cfef93d54cc https://www.encodeproject.org/files/ENCFF853KRE/@@download/ENCFF853KRE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF363GNR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF089HBQ, ENCFF419RSJ 260269 ENCODE Processing Pipeline 3a8f70edd07ddbc62185cd0f5dd74afc https://www.encodeproject.org/files/ENCFF363GNR/@@download/ENCFF363GNR.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF089HBQ bed narrowPeak peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF099SWT, ENCFF527GPC 6347644 ENCODE Processing Pipeline d25684b2ea9c5749cb2055a5aed02e15 https://www.encodeproject.org/files/ENCFF089HBQ/@@download/ENCFF089HBQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF985ONS bigBed narrowPeak peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF089HBQ 11320114 ENCODE Processing Pipeline 48a2ef965e132c48885e00c95241c96a https://www.encodeproject.org/files/ENCFF985ONS/@@download/ENCFF985ONS.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF490AFN bigWig fold change over control ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF099SWT, ENCFF527GPC 1373934444 ENCODE Processing Pipeline e35cab2df1cfcdea274b964f9e717af6 https://www.encodeproject.org/files/ENCFF490AFN/@@download/ENCFF490AFN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF874NOR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF363GNR 506822 ENCODE Processing Pipeline e4a432f83ce172510d023d9d33c251f2 https://www.encodeproject.org/files/ENCFF874NOR/@@download/ENCFF874NOR.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000YIN bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 1 301737593 Michael Snyder, Stanford 24d0a7c87bec958d9b446e532378c932 https://www.encodeproject.org/files/ENCFF000YIN/@@download/ENCFF000YIN.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YIO bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VMK 1692646 Michael Snyder, Stanford 0ec6e30aab81225c2ede3635ebe0c09d https://www.encodeproject.org/files/ENCFF000YIO/@@download/ENCFF000YIO.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000YIP fastq reads ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 572383385 Michael Snyder, Stanford 82a5df99103a8728d27e7d0d616fcebf https://www.encodeproject.org/files/ENCFF000YIP/@@download/ENCFF000YIP.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000YIR fastq reads ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 806621221 Michael Snyder, Stanford 11658698f549cc3e9a74762091e2bea0 https://www.encodeproject.org/files/ENCFF000YIR/@@download/ENCFF000YIR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000YIT bigWig signal ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 263327994 Michael Snyder, Stanford f29d6558de2a37700d177f658d0d488f https://www.encodeproject.org/files/ENCFF000YIT/@@download/ENCFF000YIT.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YIU bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 1 362753760 Michael Snyder, Stanford 3ba60bb3e1d87454e0900c28cd8852c6 https://www.encodeproject.org/files/ENCFF000YIU/@@download/ENCFF000YIU.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001VMK bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 742055 Michael Snyder, Stanford 1f9d7b9a010e07c19113f25635dc0d41 https://www.encodeproject.org/files/ENCFF001VMK/@@download/ENCFF001VMK.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CVY bed narrowPeak optimal idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 217184 ENCODE Consortium Analysis Working Group c226b910f32186397ea83661cc905568 https://www.encodeproject.org/files/ENCFF002CVY/@@download/ENCFF002CVY.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF394IDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVY 491806 ENCODE Consortium 4d75a90c205b1582df876b2791098304 https://www.encodeproject.org/files/ENCFF394IDA/@@download/ENCFF394IDA.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF931WZH bam unfiltered alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YIP, ENCFF643CGH 550227053 ENCODE Processing Pipeline f16c5059a610154692134428282ced34 https://www.encodeproject.org/files/ENCFF931WZH/@@download/ENCFF931WZH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF703YNU bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YIP, ENCFF643CGH 293142941 ENCODE Processing Pipeline 1e0c886b12ee6448a3414fe421b67360 https://www.encodeproject.org/files/ENCFF703YNU/@@download/ENCFF703YNU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF851ENM bam unfiltered alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YIP, ENCFF807MUK 548646019 ENCODE Processing Pipeline fee6f335b650ef4709f7af60e710d682 https://www.encodeproject.org/files/ENCFF851ENM/@@download/ENCFF851ENM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF943CTI bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YIP, ENCFF807MUK 293552316 ENCODE Processing Pipeline 0c9414756feae2424afe7b0ceb73e7ad https://www.encodeproject.org/files/ENCFF943CTI/@@download/ENCFF943CTI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF876USE bam unfiltered alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YIR, ENCFF807MUK 739254485 ENCODE Processing Pipeline 0fcad2813b5c52e18e4a4e90e0392a66 https://www.encodeproject.org/files/ENCFF876USE/@@download/ENCFF876USE.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF892MVR bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YIR, ENCFF807MUK 322930574 ENCODE Processing Pipeline 10514b60f5329e7a0f1d1c86d9b356b8 https://www.encodeproject.org/files/ENCFF892MVR/@@download/ENCFF892MVR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF790LTB bam unfiltered alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YIR, ENCFF643CGH 741665904 ENCODE Processing Pipeline 1783d2dcfd62f6cb7ec6ee0c74ea41c6 https://www.encodeproject.org/files/ENCFF790LTB/@@download/ENCFF790LTB.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF527CTN bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YIR, ENCFF643CGH 322502619 ENCODE Processing Pipeline 7ee407dc16dadc50dd3711cabab9eafc https://www.encodeproject.org/files/ENCFF527CTN/@@download/ENCFF527CTN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF269SWT bigWig signal p-value ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF650MOB, ENCFF943CTI 317495413 ENCODE Processing Pipeline 91513ad3a09a5d824254ec995c1f9927 https://www.encodeproject.org/files/ENCFF269SWT/@@download/ENCFF269SWT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF022ERH bigWig signal p-value ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703YNU, ENCFF767FSP 282478127 ENCODE Processing Pipeline a67e88a2558b433d9a6a8669f2e2b5f9 https://www.encodeproject.org/files/ENCFF022ERH/@@download/ENCFF022ERH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF322YOE bigWig signal p-value ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF650MOB, ENCFF892MVR 293998758 ENCODE Processing Pipeline 9386d97cd3f741167a848ac0d80fc456 https://www.encodeproject.org/files/ENCFF322YOE/@@download/ENCFF322YOE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF127GAE bigWig signal p-value ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF650MOB, ENCFF892MVR, ENCFF943CTI 331825155 ENCODE Processing Pipeline 8fa226037d983825bde0b1fd8bf4ffe9 https://www.encodeproject.org/files/ENCFF127GAE/@@download/ENCFF127GAE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF411UAB bigWig signal p-value ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF527CTN, ENCFF703YNU, ENCFF767FSP 331472457 ENCODE Processing Pipeline 249c5fdce684f08c3afa0702eb2c5bdf https://www.encodeproject.org/files/ENCFF411UAB/@@download/ENCFF411UAB.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF688CWK bigWig fold change over control ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF650MOB, ENCFF943CTI 180511824 ENCODE Processing Pipeline d25a58261f070ea04a6baf8d87dcae40 https://www.encodeproject.org/files/ENCFF688CWK/@@download/ENCFF688CWK.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF716CBU bigWig signal p-value ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF527CTN, ENCFF767FSP 287492044 ENCODE Processing Pipeline f8f3f0f99862ed1845ae58ad33a376a0 https://www.encodeproject.org/files/ENCFF716CBU/@@download/ENCFF716CBU.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF265YQH bigWig fold change over control ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703YNU, ENCFF767FSP 181398819 ENCODE Processing Pipeline c58f9d84e23e6a2bc11d647ee0d93e5f https://www.encodeproject.org/files/ENCFF265YQH/@@download/ENCFF265YQH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF586WBY bigWig fold change over control ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF650MOB, ENCFF892MVR 198123940 ENCODE Processing Pipeline d3e5623895b49313101ba8882d19d9e1 https://www.encodeproject.org/files/ENCFF586WBY/@@download/ENCFF586WBY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF837KEV bigWig fold change over control ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF527CTN, ENCFF767FSP 197773080 ENCODE Processing Pipeline df86c6f40b3c2c2aa69273b8287e1136 https://www.encodeproject.org/files/ENCFF837KEV/@@download/ENCFF837KEV.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF585OJQ bigWig fold change over control ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF527CTN, ENCFF703YNU, ENCFF767FSP 331863528 ENCODE Processing Pipeline 8c1f8dc46af8669983ccf2d061542c79 https://www.encodeproject.org/files/ENCFF585OJQ/@@download/ENCFF585OJQ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF506EKM bigWig fold change over control ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF650MOB, ENCFF892MVR, ENCFF943CTI 334404610 ENCODE Processing Pipeline a0909c4fe9c2da4d4b38624e87945b59 https://www.encodeproject.org/files/ENCFF506EKM/@@download/ENCFF506EKM.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF257FNC bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF650MOB, ENCFF943CTI 3403440 ENCODE Processing Pipeline c7c78f86b4257bf45fb74f8d62b94c06 https://www.encodeproject.org/files/ENCFF257FNC/@@download/ENCFF257FNC.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF063HEH bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF650MOB, ENCFF892MVR 3839966 ENCODE Processing Pipeline ffad26b8cc4cbfb3dcaa7882c1958b37 https://www.encodeproject.org/files/ENCFF063HEH/@@download/ENCFF063HEH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF041PDN bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703YNU, ENCFF767FSP 3393394 ENCODE Processing Pipeline 5b49952b52e03804593e5623a111521b https://www.encodeproject.org/files/ENCFF041PDN/@@download/ENCFF041PDN.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF023XCT bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF257FNC 6854133 ENCODE Processing Pipeline a2e2a8e2a63623dcfc3bc711c7344f34 https://www.encodeproject.org/files/ENCFF023XCT/@@download/ENCFF023XCT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF726RDS bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF527CTN, ENCFF767FSP 3793663 ENCODE Processing Pipeline d56f6efef7152583267b5258d5173b9b https://www.encodeproject.org/files/ENCFF726RDS/@@download/ENCFF726RDS.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF767GKW bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF650MOB, ENCFF892MVR, ENCFF943CTI 4353278 ENCODE Processing Pipeline ae495c1e29894309630830002f904f26 https://www.encodeproject.org/files/ENCFF767GKW/@@download/ENCFF767GKW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF535SJR bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF767GKW 10371872 ENCODE Processing Pipeline 28b7bf7be6a04e8d6193bb61e61a8e52 https://www.encodeproject.org/files/ENCFF535SJR/@@download/ENCFF535SJR.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF858PRX bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF527CTN, ENCFF703YNU, ENCFF767FSP 4338955 ENCODE Processing Pipeline 1f5d2513c86102779f95d0fa3084b382 https://www.encodeproject.org/files/ENCFF858PRX/@@download/ENCFF858PRX.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF160JKT bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF063HEH 7819906 ENCODE Processing Pipeline a1005e5952787081c19b4db22ad777d8 https://www.encodeproject.org/files/ENCFF160JKT/@@download/ENCFF160JKT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF139JHF bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF858PRX 10346316 ENCODE Processing Pipeline 5e5a2dd47e54e90ae68bed400e87397c https://www.encodeproject.org/files/ENCFF139JHF/@@download/ENCFF139JHF.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF504XNC bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF041PDN 6841621 ENCODE Processing Pipeline 3fa23726856c90e49f6796ece2680a40 https://www.encodeproject.org/files/ENCFF504XNC/@@download/ENCFF504XNC.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF056IOC bed narrowPeak conservative idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF063HEH, ENCFF257FNC, ENCFF767GKW 160895 ENCODE Processing Pipeline 8dbc9f5ea57d5504cb9c5190c5bcbfd5 https://www.encodeproject.org/files/ENCFF056IOC/@@download/ENCFF056IOC.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF538EEX bigBed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF726RDS 7734758 ENCODE Processing Pipeline 365c4b3acfdff24c656d9bec3f67804c https://www.encodeproject.org/files/ENCFF538EEX/@@download/ENCFF538EEX.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF318SAW bed narrowPeak conservative idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF041PDN, ENCFF419RSJ, ENCFF726RDS, ENCFF858PRX 160858 ENCODE Processing Pipeline f3175a61160ed2eb20f0fc3e0b14b115 https://www.encodeproject.org/files/ENCFF318SAW/@@download/ENCFF318SAW.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF077UYM bed narrowPeak optimal idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF063HEH, ENCFF257FNC, ENCFF767GKW 166535 ENCODE Processing Pipeline 1bfdc3d3c368a4f534014f7554f50dcd https://www.encodeproject.org/files/ENCFF077UYM/@@download/ENCFF077UYM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF154XXU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF056IOC 351006 ENCODE Processing Pipeline 723281b5ad7d5faa05dc14f624542206 https://www.encodeproject.org/files/ENCFF154XXU/@@download/ENCFF154XXU.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF970VGI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF672LKE 366965 ENCODE Processing Pipeline 5d6be9b378868aefed2e28dc2e9e9288 https://www.encodeproject.org/files/ENCFF970VGI/@@download/ENCFF970VGI.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF614OGK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF318SAW 298579 ENCODE Processing Pipeline 0dea1453f18ed1c8d2e150abfeff0944 https://www.encodeproject.org/files/ENCFF614OGK/@@download/ENCFF614OGK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF237APC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF077UYM 359671 ENCODE Processing Pipeline c34a06b60e2836587a79940bce143618 https://www.encodeproject.org/files/ENCFF237APC/@@download/ENCFF237APC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF672LKE bed narrowPeak optimal idr thresholded peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF041PDN, ENCFF419RSJ, ENCFF726RDS, ENCFF858PRX 166185 ENCODE Processing Pipeline 9ef1aec820c35f0188e0fcc19d0e91af https://www.encodeproject.org/files/ENCFF672LKE/@@download/ENCFF672LKE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RNV bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000ROC 1430203113 Vishwanath Iyer, UTA 71a497bc1a22eac42bbbd1ff27247a7c https://www.encodeproject.org/files/ENCFF000RNV/@@download/ENCFF000RNV.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000RNW bigWig base overlap signal ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1263219592 Vishwanath Iyer, UTA e2506799701495ce772d4908633548af https://www.encodeproject.org/files/ENCFF000RNW/@@download/ENCFF000RNW.bigWig hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000RNX bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000ROA 801669080 Vishwanath Iyer, UTA 15a25d31d3828d65104b57e138d1b54f https://www.encodeproject.org/files/ENCFF000RNX/@@download/ENCFF000RNX.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000RNY bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001USF 2126750 Vishwanath Iyer, UTA ce29be73fdefbdb74e54f624d1d10c45 https://www.encodeproject.org/files/ENCFF000RNY/@@download/ENCFF000RNY.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000RNZ bigWig signal ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 4530601620 Vishwanath Iyer, UTA 364e2aa5648d2ec0077d6db39cc79921 https://www.encodeproject.org/files/ENCFF000RNZ/@@download/ENCFF000RNZ.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth missing control alignments ENCFF000ROA fastq reads ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 826811179 Vishwanath Iyer, UTA 7e342137b047d7e933d5c3e1293433cc https://www.encodeproject.org/files/ENCFF000ROA/@@download/ENCFF000ROA.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPT/ released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000ROC fastq reads ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 1476306421 Vishwanath Iyer, UTA 2e950e7b7368f8a1ad653389d557335a https://www.encodeproject.org/files/ENCFF000ROC/@@download/ENCFF000ROC.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPT/ released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF001USF bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1318235 Vishwanath Iyer, UTA a3a7daa60e6440de140376f4e7603835 https://www.encodeproject.org/files/ENCFF001USF/@@download/ENCFF001USF.bed.gz hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF686DDV bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000ROA, ENCFF643CGH 582699200 ENCODE Processing Pipeline 0c23c053cb9cf2b785717691bcaffe6b https://www.encodeproject.org/files/ENCFF686DDV/@@download/ENCFF686DDV.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF506MFX bam unfiltered alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000ROA, ENCFF643CGH 963442697 ENCODE Processing Pipeline b3df8327499923070ad51e26c7a97bd3 https://www.encodeproject.org/files/ENCFF506MFX/@@download/ENCFF506MFX.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF861CNC bam unfiltered alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROC, ENCFF643CGH 1670870771 ENCODE Processing Pipeline cd266203d16ffcd2d90f40f921ccfd51 https://www.encodeproject.org/files/ENCFF861CNC/@@download/ENCFF861CNC.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF779BHG bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROC, ENCFF643CGH 1019590180 ENCODE Processing Pipeline 52eccd8fdb898aae4f0da9e4bd21c322 https://www.encodeproject.org/files/ENCFF779BHG/@@download/ENCFF779BHG.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF342NZN bam unfiltered alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000ROA, ENCFF807MUK 960798357 ENCODE Processing Pipeline 7d64239b7a7613c1836fa5a498527943 https://www.encodeproject.org/files/ENCFF342NZN/@@download/ENCFF342NZN.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF259ZVP bam unfiltered alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROC, ENCFF807MUK 1668192388 ENCODE Processing Pipeline 7d12a89ff087405612ba1e03e5493601 https://www.encodeproject.org/files/ENCFF259ZVP/@@download/ENCFF259ZVP.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF892JNF bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000ROA, ENCFF807MUK 579371130 ENCODE Processing Pipeline 6a645826a383f58143e343bc46b29a06 https://www.encodeproject.org/files/ENCFF892JNF/@@download/ENCFF892JNF.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF839ZDZ bigWig signal p-value ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF779BHG 160569277 ENCODE Processing Pipeline 90f0f2e315c8d7fcb216015506fba30e https://www.encodeproject.org/files/ENCFF839ZDZ/@@download/ENCFF839ZDZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF289JJB bigWig signal p-value ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF686DDV, ENCFF779BHG 147429962 ENCODE Processing Pipeline e816b14838a5812abaf7db0aaf3761cb https://www.encodeproject.org/files/ENCFF289JJB/@@download/ENCFF289JJB.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF719PSV bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROC, ENCFF807MUK 1014418658 ENCODE Processing Pipeline 0dfa6c6ebaff8763e8dd8eb400eb8b8c https://www.encodeproject.org/files/ENCFF719PSV/@@download/ENCFF719PSV.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF644WIA bigWig fold change over control ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF779BHG 248923808 ENCODE Processing Pipeline 328f7b8d6025ee40d27733bd933ea7a0 https://www.encodeproject.org/files/ENCFF644WIA/@@download/ENCFF644WIA.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF370ULG bigWig fold change over control ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF686DDV 166938635 ENCODE Processing Pipeline add868cbfe839687784a2663563c395e https://www.encodeproject.org/files/ENCFF370ULG/@@download/ENCFF370ULG.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF178JPQ bigWig signal p-value ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF686DDV 180893515 ENCODE Processing Pipeline f8d6bb5225b51ff38433d03b5d742832 https://www.encodeproject.org/files/ENCFF178JPQ/@@download/ENCFF178JPQ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF238GME bigWig fold change over control ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF686DDV, ENCFF779BHG 383659535 ENCODE Processing Pipeline e4af16c53820cda5663f96413ea354a0 https://www.encodeproject.org/files/ENCFF238GME/@@download/ENCFF238GME.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF269XYR bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF779BHG 3717393 ENCODE Processing Pipeline 49b72c2145e6b890d96b1584cf941a7d https://www.encodeproject.org/files/ENCFF269XYR/@@download/ENCFF269XYR.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF503BUG bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF686DDV 3475879 ENCODE Processing Pipeline 076e087b887cbe8acaa904e1a3e6b2af https://www.encodeproject.org/files/ENCFF503BUG/@@download/ENCFF503BUG.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF846CNP bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF686DDV, ENCFF779BHG 4007616 ENCODE Processing Pipeline 6fa67efd822e9cc7b1a7f77f3fea8d37 https://www.encodeproject.org/files/ENCFF846CNP/@@download/ENCFF846CNP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF035YJF bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF503BUG 6918542 ENCODE Processing Pipeline e779559f805aeecc5c5f7c253a6ec6dc https://www.encodeproject.org/files/ENCFF035YJF/@@download/ENCFF035YJF.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF178PUI bed narrowPeak optimal idr thresholded peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF269XYR, ENCFF419RSJ, ENCFF503BUG, ENCFF846CNP 541617 ENCODE Processing Pipeline 40744f47d1b94b88b85cec54ecf5ce8d https://www.encodeproject.org/files/ENCFF178PUI/@@download/ENCFF178PUI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF466NGA bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF846CNP 8213146 ENCODE Processing Pipeline 4184e89674deb7e158cc881eb3e80dbd https://www.encodeproject.org/files/ENCFF466NGA/@@download/ENCFF466NGA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF892KUY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF178PUI 983949 ENCODE Processing Pipeline 74e1f3e159d84d385e4b1b668ea2b51a https://www.encodeproject.org/files/ENCFF892KUY/@@download/ENCFF892KUY.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF794OCO bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF269XYR 7613420 ENCODE Processing Pipeline cff7e0c783afcafdc624616d404905a6 https://www.encodeproject.org/files/ENCFF794OCO/@@download/ENCFF794OCO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF189YFV bigWig signal p-value ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF297IQJ, ENCFF892JNF 179034763 ENCODE Processing Pipeline 2159985c138781e73b978dac8115fb8e https://www.encodeproject.org/files/ENCFF189YFV/@@download/ENCFF189YFV.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF787CXT bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF297IQJ, ENCFF892JNF 3443460 ENCODE Processing Pipeline 0cf91c4f6235aa79d074109821553f4e https://www.encodeproject.org/files/ENCFF787CXT/@@download/ENCFF787CXT.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF118OEK bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF950YTB 8152739 ENCODE Processing Pipeline 755b9bb3e2717f2505a2c6b3711a1d71 https://www.encodeproject.org/files/ENCFF118OEK/@@download/ENCFF118OEK.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF950YTB bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF297IQJ, ENCFF719PSV, ENCFF892JNF 3965769 ENCODE Processing Pipeline 0aeef18ce8e83db90e4820c6d92b3c54 https://www.encodeproject.org/files/ENCFF950YTB/@@download/ENCFF950YTB.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF198TWR bigWig fold change over control ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF297IQJ, ENCFF719PSV 246986638 ENCODE Processing Pipeline a5e71d393547762ecba1ed37fedfce95 https://www.encodeproject.org/files/ENCFF198TWR/@@download/ENCFF198TWR.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF214APA bigWig fold change over control ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF297IQJ, ENCFF719PSV, ENCFF892JNF 383276100 ENCODE Processing Pipeline f0350d6818ffeae0dc17db91a4ebc451 https://www.encodeproject.org/files/ENCFF214APA/@@download/ENCFF214APA.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF241HKC bigWig signal p-value ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF297IQJ, ENCFF719PSV 160250740 ENCODE Processing Pipeline c82eaa5c9d51cc3f450626b87dbd4026 https://www.encodeproject.org/files/ENCFF241HKC/@@download/ENCFF241HKC.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF327KKL bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF297IQJ, ENCFF719PSV 3660347 ENCODE Processing Pipeline 37d1306101f90abfb34886cf38a6fe60 https://www.encodeproject.org/files/ENCFF327KKL/@@download/ENCFF327KKL.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF400JPH bigWig signal p-value ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF297IQJ, ENCFF719PSV, ENCFF892JNF 147147868 ENCODE Processing Pipeline 437714cd56fb7e4d8db297ac15319cde https://www.encodeproject.org/files/ENCFF400JPH/@@download/ENCFF400JPH.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF570KBD bigWig fold change over control ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF297IQJ, ENCFF892JNF 166215913 ENCODE Processing Pipeline de442115d8876c4d290ded8ca7d6b0f9 https://www.encodeproject.org/files/ENCFF570KBD/@@download/ENCFF570KBD.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF828XBC bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF327KKL 7522886 ENCODE Processing Pipeline bf37d8f1118eaf888dd6096a4d549bd4 https://www.encodeproject.org/files/ENCFF828XBC/@@download/ENCFF828XBC.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF855HSK bed narrowPeak optimal idr thresholded peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF327KKL, ENCFF787CXT, ENCFF950YTB 520860 ENCODE Processing Pipeline 88e4bb9295bf0a07c811034ba0e4ed00 https://www.encodeproject.org/files/ENCFF855HSK/@@download/ENCFF855HSK.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF544CIO bigBed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF787CXT 6858841 ENCODE Processing Pipeline ee52abe0d5e2eb2d0b13b0695ec88a94 https://www.encodeproject.org/files/ENCFF544CIO/@@download/ENCFF544CIO.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF031SJB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF855HSK 950839 ENCODE Processing Pipeline a71534f236fd58b8bf68672d506f7eb3 https://www.encodeproject.org/files/ENCFF031SJB/@@download/ENCFF031SJB.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000ZAS bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOZ 2699985 Michael Snyder, Stanford f16936953dddc4232b72ba62c4cf7e3c https://www.encodeproject.org/files/ENCFF000ZAS/@@download/ENCFF000ZAS.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZAT bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZBX 525888439 Michael Snyder, Stanford a05f53fe0281bfa40539ec69a9b88961 https://www.encodeproject.org/files/ENCFF000ZAT/@@download/ENCFF000ZAT.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZAU bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZBR 355510229 Michael Snyder, Stanford dbaf02e3af18e34769551fd1075e6a0c https://www.encodeproject.org/files/ENCFF000ZAU/@@download/ENCFF000ZAU.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZAV bigWig signal ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 313990708 Michael Snyder, Stanford 38b0ef95d09d66b7a3f4b3b0fa92e2a2 https://www.encodeproject.org/files/ENCFF000ZAV/@@download/ENCFF000ZAV.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZBR fastq reads ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 665243819 Michael Snyder, Stanford 281de6615757edc6b3756dc689e96f5b https://www.encodeproject.org/files/ENCFF000ZBR/@@download/ENCFF000ZBR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBX fastq reads ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1040306992 Michael Snyder, Stanford 40ccf70650a20beb9079b310c432fed5 https://www.encodeproject.org/files/ENCFF000ZBX/@@download/ENCFF000ZBX.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VOZ bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1044594 Michael Snyder, Stanford 7fd1ea6d689f63e143cbf61acbf5539b https://www.encodeproject.org/files/ENCFF001VOZ/@@download/ENCFF001VOZ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CYH bed narrowPeak optimal idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 631761 ENCODE Consortium Analysis Working Group e1679483ad761bef6924874a72a68d6e https://www.encodeproject.org/files/ENCFF002CYH/@@download/ENCFF002CYH.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF733QEC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYH 1513748 ENCODE Consortium 43d1c65b8b2fc4432d1f608f72e155c5 https://www.encodeproject.org/files/ENCFF733QEC/@@download/ENCFF733QEC.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF737NMZ bam unfiltered alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZBX, ENCFF643CGH 1122283309 ENCODE Processing Pipeline 49c9076f2207593a681deed856a2008c https://www.encodeproject.org/files/ENCFF737NMZ/@@download/ENCFF737NMZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF067SPF bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBR, ENCFF643CGH 431645996 ENCODE Processing Pipeline 453a14a6bb407cca4c713f3661af6290 https://www.encodeproject.org/files/ENCFF067SPF/@@download/ENCFF067SPF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF688PJI bam unfiltered alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBR, ENCFF643CGH 714619881 ENCODE Processing Pipeline c114b341f4d801ce2a2d2c5f3da2347d https://www.encodeproject.org/files/ENCFF688PJI/@@download/ENCFF688PJI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF346VYS bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZBX, ENCFF643CGH 686100526 ENCODE Processing Pipeline 2ac9f8bb03280b0f794ab085d67113e5 https://www.encodeproject.org/files/ENCFF346VYS/@@download/ENCFF346VYS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF441RJB bam unfiltered alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZBX, ENCFF807MUK 1117833358 ENCODE Processing Pipeline a59c6712fdd625ddf8d4d24f29a5cb42 https://www.encodeproject.org/files/ENCFF441RJB/@@download/ENCFF441RJB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF093JMK bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBR, ENCFF807MUK 432137378 ENCODE Processing Pipeline 0f1a8b5d89dc70e641a9092b512ca317 https://www.encodeproject.org/files/ENCFF093JMK/@@download/ENCFF093JMK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF613ODZ bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZBX, ENCFF807MUK 686768406 ENCODE Processing Pipeline 79b802532ad294fd5559acb94ff086f1 https://www.encodeproject.org/files/ENCFF613ODZ/@@download/ENCFF613ODZ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604LIF bam unfiltered alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBR, ENCFF807MUK 712572126 ENCODE Processing Pipeline a52118bbdd0d5150911e2b9fe39f111a https://www.encodeproject.org/files/ENCFF604LIF/@@download/ENCFF604LIF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF724UBW bigWig signal p-value ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF156NSV, ENCFF346VYS, ENCFF715JBE 469386507 ENCODE Processing Pipeline 28cdc8568a9e6ecaf34e28d8128d9314 https://www.encodeproject.org/files/ENCFF724UBW/@@download/ENCFF724UBW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF757GHV bigWig fold change over control ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF156NSV, ENCFF346VYS, ENCFF715JBE 409962065 ENCODE Processing Pipeline 4e3ef63d178e9e6ca8823fa0a53e9b54 https://www.encodeproject.org/files/ENCFF757GHV/@@download/ENCFF757GHV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF670PUO bigWig signal p-value ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF067SPF, ENCFF156NSV 271245079 ENCODE Processing Pipeline d393d4932a3346fdf5de68188739cbff https://www.encodeproject.org/files/ENCFF670PUO/@@download/ENCFF670PUO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF407MZH bigWig signal p-value ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF067SPF, ENCFF156NSV, ENCFF346VYS, ENCFF715JBE 551697998 ENCODE Processing Pipeline 53ffb77a66ee6acba3471f5024d5527b https://www.encodeproject.org/files/ENCFF407MZH/@@download/ENCFF407MZH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF897EYI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078OUD 893561 ENCODE Processing Pipeline a72101031b20103e5a2e6c03d6352ef6 https://www.encodeproject.org/files/ENCFF897EYI/@@download/ENCFF897EYI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF443VMC bigWig fold change over control ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF067SPF, ENCFF156NSV 226674307 ENCODE Processing Pipeline b7c3d382329f6ab2db4e3336855251ab https://www.encodeproject.org/files/ENCFF443VMC/@@download/ENCFF443VMC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF883EPG bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF156NSV, ENCFF346VYS, ENCFF715JBE 4895653 ENCODE Processing Pipeline c9d58dcec95b368cbcff4d6f89defc7c https://www.encodeproject.org/files/ENCFF883EPG/@@download/ENCFF883EPG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF804SLJ bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF883EPG 11046492 ENCODE Processing Pipeline ad116f5dea0dd301efe8ba6bf18cc2c8 https://www.encodeproject.org/files/ENCFF804SLJ/@@download/ENCFF804SLJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF398GMI bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF067SPF, ENCFF156NSV, ENCFF346VYS, ENCFF715JBE 5422923 ENCODE Processing Pipeline 10505813b9f4ddd19898421bbe943aae https://www.encodeproject.org/files/ENCFF398GMI/@@download/ENCFF398GMI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF779QFW bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF067SPF, ENCFF156NSV 4379672 ENCODE Processing Pipeline b7eb59793cff8c4267b8aa1c0ecab346 https://www.encodeproject.org/files/ENCFF779QFW/@@download/ENCFF779QFW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF590APJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF563DQA 864795 ENCODE Processing Pipeline b1d3e17c1e07018e40c32cfe049e1e54 https://www.encodeproject.org/files/ENCFF590APJ/@@download/ENCFF590APJ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF868FYM bigWig fold change over control ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF067SPF, ENCFF156NSV, ENCFF346VYS, ENCFF715JBE 592430251 ENCODE Processing Pipeline f08fa30c5fc306f1acf8af02c56c9b70 https://www.encodeproject.org/files/ENCFF868FYM/@@download/ENCFF868FYM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF078OUD bed narrowPeak optimal idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF398GMI, ENCFF419RSJ, ENCFF779QFW, ENCFF883EPG 499377 ENCODE Processing Pipeline 7fd38a26279682973b79079be2bd5c58 https://www.encodeproject.org/files/ENCFF078OUD/@@download/ENCFF078OUD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF015WUF bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF779QFW 10071604 ENCODE Processing Pipeline e195831289a4cfdd7f2d11fa7b9631df https://www.encodeproject.org/files/ENCFF015WUF/@@download/ENCFF015WUF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF628SYB bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF398GMI 11356102 ENCODE Processing Pipeline 3bafa297b4b4c7a925875adfb4386f33 https://www.encodeproject.org/files/ENCFF628SYB/@@download/ENCFF628SYB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF563DQA bed narrowPeak conservative idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF398GMI, ENCFF419RSJ, ENCFF779QFW, ENCFF883EPG 477654 ENCODE Processing Pipeline 30b1631f819749eb315cff8f5fe43fd0 https://www.encodeproject.org/files/ENCFF563DQA/@@download/ENCFF563DQA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509LKA bigWig signal p-value ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 528577780 ENCODE Processing Pipeline 5895dc5a670ddea06347f94588b87910 https://www.encodeproject.org/files/ENCFF509LKA/@@download/ENCFF509LKA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF098GTD bigWig signal p-value ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF093JMK, ENCFF498SAC 272884672 ENCODE Processing Pipeline d94c0ded075b673fec527584382cd035 https://www.encodeproject.org/files/ENCFF098GTD/@@download/ENCFF098GTD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF490PMI bigWig fold change over control ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF093JMK, ENCFF498SAC 227882155 ENCODE Processing Pipeline 6791dcef4a787f7c2c28b7c18b2d3803 https://www.encodeproject.org/files/ENCFF490PMI/@@download/ENCFF490PMI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF565MMA bigWig fold change over control ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 397605676 ENCODE Processing Pipeline 378a1df5fc1dbeca679dc583bd4e51dd https://www.encodeproject.org/files/ENCFF565MMA/@@download/ENCFF565MMA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF368ASJ bigWig signal p-value ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF093JMK, ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 551911079 ENCODE Processing Pipeline 7df2ec999eff786af9a591d5b86ad93a https://www.encodeproject.org/files/ENCFF368ASJ/@@download/ENCFF368ASJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF028EAN bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 4900137 ENCODE Processing Pipeline b26dddd8db39fbaa02cca337b263fc5e https://www.encodeproject.org/files/ENCFF028EAN/@@download/ENCFF028EAN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF056GMV bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF093JMK, ENCFF498SAC 4385525 ENCODE Processing Pipeline 9a624a810a31b4f45f9bb4359ddf1fc8 https://www.encodeproject.org/files/ENCFF056GMV/@@download/ENCFF056GMV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF844LWM bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF028EAN 11040966 ENCODE Processing Pipeline ff9f1daaf1036b6d2d565a6995aff34e https://www.encodeproject.org/files/ENCFF844LWM/@@download/ENCFF844LWM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF822ERD bigWig fold change over control ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF093JMK, ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 594083335 ENCODE Processing Pipeline 4868bc4c0ac8251ded1b56dce6a8b985 https://www.encodeproject.org/files/ENCFF822ERD/@@download/ENCFF822ERD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF567HZK bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF093JMK, ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 5427089 ENCODE Processing Pipeline 7ac3b1da5d1f17759d3653ce3dd1e3f4 https://www.encodeproject.org/files/ENCFF567HZK/@@download/ENCFF567HZK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF796KJX bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF056GMV 10071733 ENCODE Processing Pipeline 955ccce59f9291d256c0bd0e23a58e27 https://www.encodeproject.org/files/ENCFF796KJX/@@download/ENCFF796KJX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF482CEV bed narrowPeak optimal idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF028EAN, ENCFF056GMV, ENCFF567HZK 504630 ENCODE Processing Pipeline 64b1a7c24e3ca92449341ced85c8cbed https://www.encodeproject.org/files/ENCFF482CEV/@@download/ENCFF482CEV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF880YZE bigBed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF567HZK 11353688 ENCODE Processing Pipeline 7fc2d16ebd1d8bb8f7fd679e96539b35 https://www.encodeproject.org/files/ENCFF880YZE/@@download/ENCFF880YZE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF519DOC bed narrowPeak conservative idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF028EAN, ENCFF056GMV, ENCFF567HZK 476428 ENCODE Processing Pipeline b37d0b6316750f3314161b0a1a279f19 https://www.encodeproject.org/files/ENCFF519DOC/@@download/ENCFF519DOC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF885KVK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF519DOC 862303 ENCODE Processing Pipeline f431572e9e10cb33b6a1dbed09ce6aea https://www.encodeproject.org/files/ENCFF885KVK/@@download/ENCFF885KVK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF945UCD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF482CEV 900582 ENCODE Processing Pipeline c0c74292549cfad3f0d149ab005cbba4 https://www.encodeproject.org/files/ENCFF945UCD/@@download/ENCFF945UCD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RCW bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000RDJ 1372040560 Richard Myers, HAIB 03a054288d43e7b6bc0199755875bfdf https://www.encodeproject.org/files/ENCFF000RCW/@@download/ENCFF000RCW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000RCX bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000RDL 1451909160 Richard Myers, HAIB df001e234dd670e2238995386cd476cc https://www.encodeproject.org/files/ENCFF000RCX/@@download/ENCFF000RCX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000RCZ bigBed broadPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UQD 200912 Richard Myers, HAIB 39a95b84cf0703008a810ea98f9c397c https://www.encodeproject.org/files/ENCFF000RCZ/@@download/ENCFF000RCZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000RDB bigBed broadPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UQE 835427 Richard Myers, HAIB 6b71f975318704b84a4256a46789f3e8 https://www.encodeproject.org/files/ENCFF000RDB/@@download/ENCFF000RDB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000RDC bigWig raw signal ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 27782450 Richard Myers, HAIB 0b1a74e884a891e7324969bef77fdc43 https://www.encodeproject.org/files/ENCFF000RDC/@@download/ENCFF000RDC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF000RDD bigWig raw signal ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 31560099 Richard Myers, HAIB ce7af18f9b0c012cd51d9e152ec538f3 https://www.encodeproject.org/files/ENCFF000RDD/@@download/ENCFF000RDD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF000RDJ fastq reads ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1267789671 Richard Myers, HAIB 037437e3194d7531dd495cd85e761315 https://www.encodeproject.org/files/ENCFF000RDJ/@@download/ENCFF000RDJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCF/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000RDL fastq reads ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1466971018 Richard Myers, HAIB ce4b47c3e3fa2ae523b7bfe194766975 https://www.encodeproject.org/files/ENCFF000RDL/@@download/ENCFF000RDL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RCB/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF001UQD bed broadPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 1 92502 Richard Myers, HAIB 29a9ab65cb8637b8d04ea139a911dc77 https://www.encodeproject.org/files/ENCFF001UQD/@@download/ENCFF001UQD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF001UQE bed broadPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 1 416566 Richard Myers, HAIB 211682e47be93fe462abf4b5bb015d2d https://www.encodeproject.org/files/ENCFF001UQE/@@download/ENCFF001UQE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF002CNM bed narrowPeak optimal idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 343551 ENCODE Consortium Analysis Working Group 70056d3abc410288536533fbc11985e0 https://www.encodeproject.org/files/ENCFF002CNM/@@download/ENCFF002CNM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF567DMC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNM 710384 ENCODE Consortium c42f3232ccd69034578f97babd953067 https://www.encodeproject.org/files/ENCFF567DMC/@@download/ENCFF567DMC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF046VFA bam unfiltered alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDL, ENCFF643CGH 1578920928 ENCODE Processing Pipeline c0646c233ae996b783a0ba0d24a82acb https://www.encodeproject.org/files/ENCFF046VFA/@@download/ENCFF046VFA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF253FOO bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDL, ENCFF643CGH 773234380 ENCODE Processing Pipeline 8a173e7cd525dbb7bda97c03f36c3ddd https://www.encodeproject.org/files/ENCFF253FOO/@@download/ENCFF253FOO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF131FSC bam unfiltered alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDJ, ENCFF643CGH 1433630717 ENCODE Processing Pipeline 04ff92c353fadfbf44d0ff6fae6d4f78 https://www.encodeproject.org/files/ENCFF131FSC/@@download/ENCFF131FSC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF538TLU bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDJ, ENCFF643CGH 570378145 ENCODE Processing Pipeline babcf9ad63624295d0c3219ef76cb66c https://www.encodeproject.org/files/ENCFF538TLU/@@download/ENCFF538TLU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF970KJD bam unfiltered alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDL, ENCFF807MUK 1574814681 ENCODE Processing Pipeline 9d5b37d32db3109f31921ed9fc2c75e0 https://www.encodeproject.org/files/ENCFF970KJD/@@download/ENCFF970KJD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF428FLU bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDL, ENCFF807MUK 773609465 ENCODE Processing Pipeline 5931ef27efe32f7ff6c7f6a644fb010f https://www.encodeproject.org/files/ENCFF428FLU/@@download/ENCFF428FLU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF025UDZ bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDJ, ENCFF807MUK 570559668 ENCODE Processing Pipeline 6050896718b9a223558d571659ab527c https://www.encodeproject.org/files/ENCFF025UDZ/@@download/ENCFF025UDZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF115ZTF bam unfiltered alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDJ, ENCFF807MUK 1429210226 ENCODE Processing Pipeline ac73fcf9b5731cc671f487e2fe8de3f0 https://www.encodeproject.org/files/ENCFF115ZTF/@@download/ENCFF115ZTF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF401CXA bigWig signal p-value ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF383VZK, ENCFF538TLU 439710427 ENCODE Processing Pipeline 5f94e4e64de7b8f513493c29d2979c2a https://www.encodeproject.org/files/ENCFF401CXA/@@download/ENCFF401CXA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF176IQW bigWig signal p-value ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF253FOO 466191254 ENCODE Processing Pipeline d6a681176f5cfc6ecab7c82062cc7575 https://www.encodeproject.org/files/ENCFF176IQW/@@download/ENCFF176IQW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF130TPK bigWig signal p-value ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118ENS, ENCFF253FOO, ENCFF383VZK, ENCFF538TLU 832295967 ENCODE Processing Pipeline 978739d8e02561dcd045193cf2d7bf77 https://www.encodeproject.org/files/ENCFF130TPK/@@download/ENCFF130TPK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF422PLX bigWig signal p-value ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF025UDZ, ENCFF470EPV 430701864 ENCODE Processing Pipeline 1d40b2c832ca03a1a2715c4eb4b56ca7 https://www.encodeproject.org/files/ENCFF422PLX/@@download/ENCFF422PLX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF969QNN bigWig signal p-value ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF428FLU 560883983 ENCODE Processing Pipeline b667dcc06c2372f1ee98f5ba85ee7ba8 https://www.encodeproject.org/files/ENCFF969QNN/@@download/ENCFF969QNN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF408BNS bigWig signal p-value ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF025UDZ, ENCFF080EVD, ENCFF428FLU, ENCFF470EPV 960167937 ENCODE Processing Pipeline 0f347a2253fe423e6f0d21b86f0e4599 https://www.encodeproject.org/files/ENCFF408BNS/@@download/ENCFF408BNS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF811MNZ bigWig fold change over control ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF383VZK, ENCFF538TLU 295271548 ENCODE Processing Pipeline 6e2298b3f64c10c1007c86e544791946 https://www.encodeproject.org/files/ENCFF811MNZ/@@download/ENCFF811MNZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF944MRR bigWig fold change over control ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF253FOO 364745961 ENCODE Processing Pipeline 4db55148d5c3024a3a518203c1e5148c https://www.encodeproject.org/files/ENCFF944MRR/@@download/ENCFF944MRR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF116PTD bigWig fold change over control ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF025UDZ, ENCFF470EPV 294890975 ENCODE Processing Pipeline c0fcd5b2ab73b3e9930ac38a2f5be72b https://www.encodeproject.org/files/ENCFF116PTD/@@download/ENCFF116PTD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF857CEX bigWig fold change over control ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF428FLU 368783576 ENCODE Processing Pipeline ccb13309d9b04e3735cce0d715fc8577 https://www.encodeproject.org/files/ENCFF857CEX/@@download/ENCFF857CEX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF476PLO bigWig fold change over control ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118ENS, ENCFF253FOO, ENCFF383VZK, ENCFF538TLU 737698840 ENCODE Processing Pipeline aaa509849732180403029b67d46d472c https://www.encodeproject.org/files/ENCFF476PLO/@@download/ENCFF476PLO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF462TXD bigWig fold change over control ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF025UDZ, ENCFF080EVD, ENCFF428FLU, ENCFF470EPV 731319196 ENCODE Processing Pipeline 31c800a18734b7c171bd4391759289c3 https://www.encodeproject.org/files/ENCFF462TXD/@@download/ENCFF462TXD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF363OIC bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF383VZK, ENCFF538TLU 4080585 ENCODE Processing Pipeline 0475c8ece241493ee58b831f47024c01 https://www.encodeproject.org/files/ENCFF363OIC/@@download/ENCFF363OIC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF650GZO bed narrowPeak optimal idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF216MKT, ENCFF281QDR, ENCFF795KPL 346921 ENCODE Processing Pipeline de965e0f3921297c8f2d5541c4be4f57 https://www.encodeproject.org/files/ENCFF650GZO/@@download/ENCFF650GZO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF845WJG bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF118ENS, ENCFF253FOO 5635215 ENCODE Processing Pipeline 16062f34ba951e7ee5de07a62c2eb7ae https://www.encodeproject.org/files/ENCFF845WJG/@@download/ENCFF845WJG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF047CHD bigBed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF363OIC 10391440 ENCODE Processing Pipeline 1ad5845c9d4647ba9f8517bc8913a139 https://www.encodeproject.org/files/ENCFF047CHD/@@download/ENCFF047CHD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF216MKT bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF025UDZ, ENCFF080EVD, ENCFF428FLU, ENCFF470EPV 6356522 ENCODE Processing Pipeline 8fa0382910a77ce3761f12322528dcf7 https://www.encodeproject.org/files/ENCFF216MKT/@@download/ENCFF216MKT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF045SLE bigBed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF795KPL 10385751 ENCODE Processing Pipeline 78379832b7d052163b4690218cefbac7 https://www.encodeproject.org/files/ENCFF045SLE/@@download/ENCFF045SLE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF337VNM bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118ENS, ENCFF253FOO, ENCFF383VZK, ENCFF538TLU 6289560 ENCODE Processing Pipeline 314adc08226e942176e75801586f1370 https://www.encodeproject.org/files/ENCFF337VNM/@@download/ENCFF337VNM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF281QDR bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF428FLU 5627741 ENCODE Processing Pipeline 6e21c822da38e7b264a767b034f30d3a https://www.encodeproject.org/files/ENCFF281QDR/@@download/ENCFF281QDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF795KPL bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF025UDZ, ENCFF470EPV 4079696 ENCODE Processing Pipeline a90773fd5fe8725ab93d8f966116e4a4 https://www.encodeproject.org/files/ENCFF795KPL/@@download/ENCFF795KPL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF748DPS bigBed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF845WJG 13054251 ENCODE Processing Pipeline f753fafe10a7f4a0cc8301d09205c977 https://www.encodeproject.org/files/ENCFF748DPS/@@download/ENCFF748DPS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF520DSB bigBed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF281QDR 13046237 ENCODE Processing Pipeline bdae11cd691ed1c712731d9d35844cfb https://www.encodeproject.org/files/ENCFF520DSB/@@download/ENCFF520DSB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF010ZAC bigBed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF337VNM 13275358 ENCODE Processing Pipeline 8f4b041740bf09d747445c222e49ac89 https://www.encodeproject.org/files/ENCFF010ZAC/@@download/ENCFF010ZAC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF600VDZ bed narrowPeak conservative idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF337VNM, ENCFF363OIC, ENCFF419RSJ, ENCFF845WJG 215161 ENCODE Processing Pipeline 55043020d3f080edc3ac92ab8e188604 https://www.encodeproject.org/files/ENCFF600VDZ/@@download/ENCFF600VDZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF266MZL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF600VDZ 432842 ENCODE Processing Pipeline c237364f3c9cf247896d531288376920 https://www.encodeproject.org/files/ENCFF266MZL/@@download/ENCFF266MZL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF840IIP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF650GZO 608217 ENCODE Processing Pipeline 3c57a48898a678d61522616109a0a29d https://www.encodeproject.org/files/ENCFF840IIP/@@download/ENCFF840IIP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF663RUS bed narrowPeak optimal idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF337VNM, ENCFF363OIC, ENCFF419RSJ, ENCFF845WJG 339374 ENCODE Processing Pipeline 41b088e897a44a1ba0b7402fe875d6cd https://www.encodeproject.org/files/ENCFF663RUS/@@download/ENCFF663RUS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF142YLC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF663RUS 598167 ENCODE Processing Pipeline b7c5c586babef3bf445dcac68a81c1b7 https://www.encodeproject.org/files/ENCFF142YLC/@@download/ENCFF142YLC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF196JLY bed narrowPeak conservative idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF216MKT, ENCFF281QDR, ENCFF795KPL 214070 ENCODE Processing Pipeline 2bdb5327ff520e77bffffd6b83eabae1 https://www.encodeproject.org/files/ENCFF196JLY/@@download/ENCFF196JLY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF759MRS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF196JLY 430248 ENCODE Processing Pipeline bdcfe4c272359c4b8cdcc503194a884b https://www.encodeproject.org/files/ENCFF759MRS/@@download/ENCFF759MRS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF331QDW bigBed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF216MKT 13294135 ENCODE Processing Pipeline e05b43e9e99baca942b393d5b0f4b66a https://www.encodeproject.org/files/ENCFF331QDW/@@download/ENCFF331QDW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000XDL bam alignments ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XDR 506277557 Michael Snyder, Stanford cb45e291a64a1ae2eb65f8acc4cd5127 https://www.encodeproject.org/files/ENCFF000XDL/@@download/ENCFF000XDL.bam hg19 released low read length biological replicates with identical biosample, duplicate lane review ENCFF000XDM bam alignments ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XDT 639532050 Michael Snyder, Stanford 53ee837f6a22a3998b823f1798820cc2 https://www.encodeproject.org/files/ENCFF000XDM/@@download/ENCFF000XDM.bam hg19 released low read length biological replicates with identical biosample, duplicate lane review ENCFF000XDQ bigBed narrowPeak peaks ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VIJ 1121759 Michael Snyder, Stanford 237123cc515d05052ea43f9ea4011fe3 https://www.encodeproject.org/files/ENCFF000XDQ/@@download/ENCFF000XDQ.bigBed hg19 released low read length biological replicates with identical biosample, duplicate lane review ENCFF000XDR fastq reads ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1007410085 Michael Snyder, Stanford 86dc7ae492bb208c255aba510fb8dd8f https://www.encodeproject.org/files/ENCFF000XDR/@@download/ENCFF000XDR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample, duplicate lane review ENCFF000XDT fastq reads ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1151079323 Michael Snyder, Stanford bbcd90616cb407933de188ca1b77a49c https://www.encodeproject.org/files/ENCFF000XDT/@@download/ENCFF000XDT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample, duplicate lane review ENCFF000XDV bigWig signal ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 418141275 Michael Snyder, Stanford 58837d25ab2d6cdfc6bdac6d72526b48 https://www.encodeproject.org/files/ENCFF000XDV/@@download/ENCFF000XDV.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from, duplicate lane review ENCFF001VIJ bed narrowPeak peaks ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 481918 Michael Snyder, Stanford 7d0f94a2a9b03295b5172f8d91957e3d https://www.encodeproject.org/files/ENCFF001VIJ/@@download/ENCFF001VIJ.bed.gz hg19 released low read length biological replicates with identical biosample, duplicate lane review, missing derived_from ENCFF002CSJ bed narrowPeak optimal idr thresholded peaks ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 128199 ENCODE Consortium Analysis Working Group 68b83db449782d8ce122a93a2d7a85b9 https://www.encodeproject.org/files/ENCFF002CSJ/@@download/ENCFF002CSJ.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from, duplicate lane review ENCFF429VQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CSJ 413412 ENCODE Consortium 5f8c652bfd03f5378f1d3b464ccddef3 https://www.encodeproject.org/files/ENCFF429VQJ/@@download/ENCFF429VQJ.bigBed hg19 released low read length biological replicates with identical biosample, duplicate lane review ENCFF000ZGX bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 1 373166761 Kevin Struhl, HMS c9a0dadadb91b656d8c9c7bb998ea7c3 https://www.encodeproject.org/files/ENCFF000ZGX/@@download/ENCFF000ZGX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from ENCFF000ZGY bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 1 498391153 Kevin Struhl, HMS e2f036448dd640deb95232ff9eb6cc8a https://www.encodeproject.org/files/ENCFF000ZGY/@@download/ENCFF000ZGY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from ENCFF000ZGZ bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPV 5137341 Kevin Struhl, HMS bc50202aead5f410cf41801bb9f0da17 https://www.encodeproject.org/files/ENCFF000ZGZ/@@download/ENCFF000ZGZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZHA fastq reads ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 796541076 Kevin Struhl, HMS 287ee23b913df0cc6ead6df08561c93b https://www.encodeproject.org/files/ENCFF000ZHA/@@download/ENCFF000ZHA.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZHC fastq reads ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 917964958 Kevin Struhl, HMS a7e5fde97d45a18841ff4881cf149259 https://www.encodeproject.org/files/ENCFF000ZHC/@@download/ENCFF000ZHC.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZHE bigWig signal ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 320699455 Kevin Struhl, HMS ad79ae85cf87e688f13328c32d35a282 https://www.encodeproject.org/files/ENCFF000ZHE/@@download/ENCFF000ZHE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from ENCFF001VPV bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2044101 Kevin Struhl, HMS e1aa56a8a87c363be9817c2ed3069a50 https://www.encodeproject.org/files/ENCFF001VPV/@@download/ENCFF001VPV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from ENCFF002CYZ bed narrowPeak optimal idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 673835 ENCODE Consortium Analysis Working Group e507c5bba801a891bb1a2430b629aab3 https://www.encodeproject.org/files/ENCFF002CYZ/@@download/ENCFF002CYZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization missing derived_from, biological replicates with identical biosample ENCFF550WBG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYZ 1399747 ENCODE Consortium 396c873a375fddb3af64f6cd8ef05a6a https://www.encodeproject.org/files/ENCFF550WBG/@@download/ENCFF550WBG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF188YIC bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZHA, ENCFF643CGH 421477106 ENCODE Processing Pipeline 638a08e0aa1a7b10298dad3de2d4b10c https://www.encodeproject.org/files/ENCFF188YIC/@@download/ENCFF188YIC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF880OQN bam unfiltered alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZHA, ENCFF643CGH 823712707 ENCODE Processing Pipeline 92e79b069b381fc3898847074e07dc4b https://www.encodeproject.org/files/ENCFF880OQN/@@download/ENCFF880OQN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF327MCF bam unfiltered alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZHC, ENCFF643CGH 997839949 ENCODE Processing Pipeline 20e128f62b359495e53214c1f9738aff https://www.encodeproject.org/files/ENCFF327MCF/@@download/ENCFF327MCF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF010YAL bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZHC, ENCFF643CGH 629192359 ENCODE Processing Pipeline 41819a6467c0343653b836d0e53488f6 https://www.encodeproject.org/files/ENCFF010YAL/@@download/ENCFF010YAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF209CID bam unfiltered alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZHA, ENCFF807MUK 820725895 ENCODE Processing Pipeline dff850f8551879e9e0802f02db9eeac3 https://www.encodeproject.org/files/ENCFF209CID/@@download/ENCFF209CID.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF339PKZ bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZHA, ENCFF807MUK 421759220 ENCODE Processing Pipeline d2c0ab594ed1a489e15eedebdaf004d8 https://www.encodeproject.org/files/ENCFF339PKZ/@@download/ENCFF339PKZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF060WWY bam unfiltered alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZHC, ENCFF807MUK 993788556 ENCODE Processing Pipeline 29255101febffc4cecdb2bff8725d581 https://www.encodeproject.org/files/ENCFF060WWY/@@download/ENCFF060WWY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF495TVZ bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZHC, ENCFF807MUK 629531284 ENCODE Processing Pipeline 266b8a214c8302c68e1627ec744f25e5 https://www.encodeproject.org/files/ENCFF495TVZ/@@download/ENCFF495TVZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF355QRG bigWig signal p-value ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF188YIC, ENCFF252KTP 1236508950 ENCODE Processing Pipeline 9fb35368484c1a89df5e897858f55e65 https://www.encodeproject.org/files/ENCFF355QRG/@@download/ENCFF355QRG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF207GZZ bigWig signal p-value ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF010YAL, ENCFF252KTP 1320970831 ENCODE Processing Pipeline 522f71ff27883f0566a4b64b0776173a https://www.encodeproject.org/files/ENCFF207GZZ/@@download/ENCFF207GZZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF433UMU bigWig signal p-value ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010YAL, ENCFF188YIC, ENCFF252KTP 1410645015 ENCODE Processing Pipeline cc77722525505a032e06374050367d3a https://www.encodeproject.org/files/ENCFF433UMU/@@download/ENCFF433UMU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF426QFM bigWig fold change over control ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF188YIC, ENCFF252KTP 636899900 ENCODE Processing Pipeline 9941df17b7f4a951c40eae0d7bee2669 https://www.encodeproject.org/files/ENCFF426QFM/@@download/ENCFF426QFM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF093KXR bigWig fold change over control ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF010YAL, ENCFF252KTP 911484128 ENCODE Processing Pipeline 475132db170dfc733d3094843e8971af https://www.encodeproject.org/files/ENCFF093KXR/@@download/ENCFF093KXR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF698LLH bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF010YAL, ENCFF252KTP 5680975 ENCODE Processing Pipeline f1916d81029cd4f55a3547607c92731e https://www.encodeproject.org/files/ENCFF698LLH/@@download/ENCFF698LLH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF532TVO bigWig fold change over control ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010YAL, ENCFF188YIC, ENCFF252KTP 1142535219 ENCODE Processing Pipeline 1a475e7f4d4b8d7fbacd9f1ede314aed https://www.encodeproject.org/files/ENCFF532TVO/@@download/ENCFF532TVO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF421CVD bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010YAL, ENCFF188YIC, ENCFF252KTP 6181766 ENCODE Processing Pipeline efd9fae9fbf0d3f95e8204d693a5b87f https://www.encodeproject.org/files/ENCFF421CVD/@@download/ENCFF421CVD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF964XSZ bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF018FAJ 10854151 ENCODE Processing Pipeline f4e26ff047429f9479162da28345d301 https://www.encodeproject.org/files/ENCFF964XSZ/@@download/ENCFF964XSZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF018FAJ bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF188YIC, ENCFF252KTP 5203215 ENCODE Processing Pipeline d64e33d00e6fe82668a6378238b6742f https://www.encodeproject.org/files/ENCFF018FAJ/@@download/ENCFF018FAJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF542STO bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF421CVD 11408581 ENCODE Processing Pipeline 9fe6d52e3ceeb5de58f1dd2a30ba8ae1 https://www.encodeproject.org/files/ENCFF542STO/@@download/ENCFF542STO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF013XMV bed narrowPeak conservative idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF018FAJ, ENCFF419RSJ, ENCFF421CVD, ENCFF698LLH 628138 ENCODE Processing Pipeline dca70cf01725848786ee09a776cb390a https://www.encodeproject.org/files/ENCFF013XMV/@@download/ENCFF013XMV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF771NDN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF443CEL 1127127 ENCODE Processing Pipeline f1a11bd1f601ec5e2d8a2bc60d376a40 https://www.encodeproject.org/files/ENCFF771NDN/@@download/ENCFF771NDN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF560FVS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF013XMV 1072838 ENCODE Processing Pipeline df195a18c33f288585c2eb320311cb10 https://www.encodeproject.org/files/ENCFF560FVS/@@download/ENCFF560FVS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF443CEL bed narrowPeak optimal idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF018FAJ, ENCFF419RSJ, ENCFF421CVD, ENCFF698LLH 672528 ENCODE Processing Pipeline 41348bd06b666cacea6754085f16da29 https://www.encodeproject.org/files/ENCFF443CEL/@@download/ENCFF443CEL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF393GSN bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF698LLH 11275275 ENCODE Processing Pipeline 10d20a283377f8e13fdd7e5c15c71601 https://www.encodeproject.org/files/ENCFF393GSN/@@download/ENCFF393GSN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF619VOM bigWig signal p-value ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF495TVZ 1379449061 ENCODE Processing Pipeline 9d8db3e44c11ef6c20dec2b2110705fe https://www.encodeproject.org/files/ENCFF619VOM/@@download/ENCFF619VOM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF905TTJ bigWig fold change over control ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF495TVZ 913849287 ENCODE Processing Pipeline 000feedbd480848347f09f3ccd15ca46 https://www.encodeproject.org/files/ENCFF905TTJ/@@download/ENCFF905TTJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF660LCY bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF495TVZ 5776906 ENCODE Processing Pipeline 9613132234e18a13ba2472b1490ad3dc https://www.encodeproject.org/files/ENCFF660LCY/@@download/ENCFF660LCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF832XIR bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF660LCY 11394628 ENCODE Processing Pipeline 1a01327a0e3e82d3989a206b8eb885b9 https://www.encodeproject.org/files/ENCFF832XIR/@@download/ENCFF832XIR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF165UQL bigWig signal p-value ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF339PKZ, ENCFF425RUE 1237677728 ENCODE Processing Pipeline 9453ccb98f7ae18d187c0b7354f9deed https://www.encodeproject.org/files/ENCFF165UQL/@@download/ENCFF165UQL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF853BSQ bigWig fold change over control ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF339PKZ, ENCFF425RUE 639873493 ENCODE Processing Pipeline ec7997984e1c36004d1d652f8d5c0962 https://www.encodeproject.org/files/ENCFF853BSQ/@@download/ENCFF853BSQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF319ZXR bigWig fold change over control ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF339PKZ, ENCFF425RUE, ENCFF495TVZ 1174844987 ENCODE Processing Pipeline a52d292ef597ae6aa4b5c0554ce96004 https://www.encodeproject.org/files/ENCFF319ZXR/@@download/ENCFF319ZXR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF437OUA bed narrowPeak conservative idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF190UWS, ENCFF485KEP, ENCFF660LCY 629488 ENCODE Processing Pipeline ff19423c06d94b19a2d8ee1b59f37549 https://www.encodeproject.org/files/ENCFF437OUA/@@download/ENCFF437OUA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF772PCI bed narrowPeak optimal idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF190UWS, ENCFF485KEP, ENCFF660LCY 667279 ENCODE Processing Pipeline 480e952f21e9a364c2c650596739204d https://www.encodeproject.org/files/ENCFF772PCI/@@download/ENCFF772PCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF596FEZ bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF190UWS 11544773 ENCODE Processing Pipeline be75c8a82e9490f9543e4299fe8953ea https://www.encodeproject.org/files/ENCFF596FEZ/@@download/ENCFF596FEZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF489MRU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF437OUA 1075303 ENCODE Processing Pipeline 059bab601ce979bdc41890eecfdc1f2f https://www.encodeproject.org/files/ENCFF489MRU/@@download/ENCFF489MRU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF392KHD bigWig signal p-value ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF339PKZ, ENCFF425RUE, ENCFF495TVZ 1512771258 ENCODE Processing Pipeline ec088c803838fdea0997c67bc54927f6 https://www.encodeproject.org/files/ENCFF392KHD/@@download/ENCFF392KHD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF485KEP bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF339PKZ, ENCFF425RUE 5268373 ENCODE Processing Pipeline 6a09194a187e1463c470842e3a88a254 https://www.encodeproject.org/files/ENCFF485KEP/@@download/ENCFF485KEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF190UWS bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF339PKZ, ENCFF425RUE, ENCFF495TVZ 6294696 ENCODE Processing Pipeline 26786486133157f3156b1acb9b4a66fe https://www.encodeproject.org/files/ENCFF190UWS/@@download/ENCFF190UWS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF910TIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF772PCI 1124690 ENCODE Processing Pipeline 942e062434f3ff868c613552b50d4794 https://www.encodeproject.org/files/ENCFF910TIQ/@@download/ENCFF910TIQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF136BIN bigBed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF485KEP 10955742 ENCODE Processing Pipeline 6a77c4a91596a6cceb1c629e25f2efa4 https://www.encodeproject.org/files/ENCFF136BIN/@@download/ENCFF136BIN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF389XGF fastq reads ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 2 ENCFF899YPM 2682927762 Michael Snyder, Stanford 2512b991eb6a55550adef3324a481b4a SRA:SRR6213979 https://www.encodeproject.org/files/ENCFF389XGF/@@download/ENCFF389XGF.fastq.gz Illumina HiSeq 4000 /files/ENCFF364SOU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF899YPM fastq reads ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 1 ENCFF389XGF 2309176315 Michael Snyder, Stanford b3811aaf14f513cca8f22cc7c8a24c37 SRA:SRR6213979 https://www.encodeproject.org/files/ENCFF899YPM/@@download/ENCFF899YPM.fastq.gz Illumina HiSeq 4000 /files/ENCFF850NEC/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF521IMW bam unfiltered alignments ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF389XGF, ENCFF643CGH, ENCFF899YPM 4616490434 ENCODE Processing Pipeline aeb0d940b18a570f6f51327251a93dc2 https://www.encodeproject.org/files/ENCFF521IMW/@@download/ENCFF521IMW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF559DZL bam unfiltered alignments ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF389XGF, ENCFF807MUK, ENCFF899YPM 4614219321 ENCODE Processing Pipeline 4994793b4d400d2beb5a03baad455f46 https://www.encodeproject.org/files/ENCFF559DZL/@@download/ENCFF559DZL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF447PIY bam alignments ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF389XGF, ENCFF643CGH, ENCFF899YPM 3455320740 ENCODE Processing Pipeline a6f9c23d09493ca51989db18e71c53ea https://www.encodeproject.org/files/ENCFF447PIY/@@download/ENCFF447PIY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF225TLR bam alignments ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF389XGF, ENCFF807MUK, ENCFF899YPM 3451290923 ENCODE Processing Pipeline ac51959a21472eb66c1e427ec9487323 https://www.encodeproject.org/files/ENCFF225TLR/@@download/ENCFF225TLR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF885OJN bigWig signal p-value ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF225TLR, ENCFF942GWO 1133613025 ENCODE Processing Pipeline 1c331b2f15c87d462c8ee63aa247b45a https://www.encodeproject.org/files/ENCFF885OJN/@@download/ENCFF885OJN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF724LWX bigWig fold change over control ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF225TLR, ENCFF942GWO 1140205865 ENCODE Processing Pipeline 19eba3a7fc3bf310f002d873d471e34c https://www.encodeproject.org/files/ENCFF724LWX/@@download/ENCFF724LWX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF483ENA bed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF225TLR, ENCFF942GWO 6460385 ENCODE Processing Pipeline 49e4b91ad490e293a8051bd802f597fc https://www.encodeproject.org/files/ENCFF483ENA/@@download/ENCFF483ENA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF899MQP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF483ENA 743559 ENCODE Processing Pipeline d1218680f58548369a06ea439632e9ed https://www.encodeproject.org/files/ENCFF899MQP/@@download/ENCFF899MQP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF371DMJ bigBed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF483ENA 13915029 ENCODE Processing Pipeline 7967f0335acc82541e56adfeacde395c https://www.encodeproject.org/files/ENCFF371DMJ/@@download/ENCFF371DMJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF750NOX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF899MQP 1258049 ENCODE Processing Pipeline dd93d93b1b2fea7313498c702cf1c557 https://www.encodeproject.org/files/ENCFF750NOX/@@download/ENCFF750NOX.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF187EOG bigWig signal p-value ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF447PIY, ENCFF662BKD 1234637432 ENCODE Processing Pipeline 18f3a1351997550394f51339b84fc590 https://www.encodeproject.org/files/ENCFF187EOG/@@download/ENCFF187EOG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF341UHT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF072CBX, ENCFF419RSJ 733675 ENCODE Processing Pipeline 90ee7f4bf41e00ab797f4b0b9893c388 https://www.encodeproject.org/files/ENCFF341UHT/@@download/ENCFF341UHT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF836FGQ bigBed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF072CBX 13901853 ENCODE Processing Pipeline 9e64510640c4bda66e028dde7dd59936 https://www.encodeproject.org/files/ENCFF836FGQ/@@download/ENCFF836FGQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF306NUN bigWig fold change over control ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF447PIY, ENCFF662BKD 1137583587 ENCODE Processing Pipeline 568c2bfcf481dd9b05621ab4e8ebe975 https://www.encodeproject.org/files/ENCFF306NUN/@@download/ENCFF306NUN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF495PUY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF341UHT 1244526 ENCODE Processing Pipeline 2ac887d849a12867f39a7a7054f8c62f https://www.encodeproject.org/files/ENCFF495PUY/@@download/ENCFF495PUY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF072CBX bed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF447PIY, ENCFF662BKD 6438521 ENCODE Processing Pipeline 514692fd6c73c27ef7fa4ba291108acc https://www.encodeproject.org/files/ENCFF072CBX/@@download/ENCFF072CBX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000XJO bam alignments ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XJP 310033249 Sherman Weissman, Yale be81e631d0d8237888fea03e8dc1940b https://www.encodeproject.org/files/ENCFF000XJO/@@download/ENCFF000XJO.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJP fastq reads ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 258961197 Sherman Weissman, Yale 760d916257cec121d4dd9b97805a2f23 https://www.encodeproject.org/files/ENCFF000XJP/@@download/ENCFF000XJP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJR bigBed narrowPeak peaks ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJA 656564 Sherman Weissman, Yale 4df634e25b0c6efaa7f4d149c2b1a4a6 https://www.encodeproject.org/files/ENCFF000XJR/@@download/ENCFF000XJR.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJS fastq reads ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 350200966 Sherman Weissman, Yale 5c42e3bff956a89a26afd500ddfd6f75 https://www.encodeproject.org/files/ENCFF000XJS/@@download/ENCFF000XJS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJT bigWig signal ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 301327176 Sherman Weissman, Yale a953ad415c68f6ceae06933dcb010bff https://www.encodeproject.org/files/ENCFF000XJT/@@download/ENCFF000XJT.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XJU bam alignments ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XJS 440543566 Sherman Weissman, Yale 54505d34f9644164e56565c109b16f95 https://www.encodeproject.org/files/ENCFF000XJU/@@download/ENCFF000XJU.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJV bam alignments ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XKD 416825883 Sherman Weissman, Yale 147797901033b8f15ff6e6e19e45b831 https://www.encodeproject.org/files/ENCFF000XJV/@@download/ENCFF000XJV.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XKD fastq reads ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 361687864 Sherman Weissman, Yale bdea28b9f3af6cdf252c55b11955ff5e https://www.encodeproject.org/files/ENCFF000XKD/@@download/ENCFF000XKD.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VJA bed narrowPeak peaks ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 278587 Sherman Weissman, Yale 638d76fe3cbd93e5dd0ea98edfc3ded0 https://www.encodeproject.org/files/ENCFF001VJA/@@download/ENCFF001VJA.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CSY bed narrowPeak optimal idr thresholded peaks ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 453301 ENCODE Consortium Analysis Working Group ebdabfe25f69ac5107fc0aa03d1ecae4 https://www.encodeproject.org/files/ENCFF002CSY/@@download/ENCFF002CSY.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF441RGW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSY 1223703 ENCODE Consortium 50e8190b284ae2b8b0e1eea29131ff70 https://www.encodeproject.org/files/ENCFF441RGW/@@download/ENCFF441RGW.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF813EAV bam unfiltered alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 50 ENCFF369FNW, ENCFF489GQR, ENCFF807MUK 2120229349 ENCODE Processing Pipeline 58f97da00a42f85fc2dafa1c1eab0958 https://www.encodeproject.org/files/ENCFF813EAV/@@download/ENCFF813EAV.bam hg19 released missing genetic modification characterization ENCFF648MOC bam unfiltered alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 50 ENCFF591FKI, ENCFF763BLG, ENCFF807MUK 1749577656 ENCODE Processing Pipeline 12c23984f4e4c6c3da490045bb47cebe https://www.encodeproject.org/files/ENCFF648MOC/@@download/ENCFF648MOC.bam hg19 released missing genetic modification characterization ENCFF489GQR fastq reads ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 650266007 Kevin White, UChicago d691d2490b6fe28e6ae5ce043284ec59 SRA:SRR6213565 https://www.encodeproject.org/files/ENCFF489GQR/@@download/ENCFF489GQR.fastq.gz Illumina HiSeq 2500 /files/ENCFF406IWG/, /files/ENCFF552UHO/ released missing genetic modification characterization ENCFF763BLG fastq reads ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 813222586 Kevin White, UChicago a5afda0f5ca25f3da7910f603cdcc6ce SRA:SRR6213563 https://www.encodeproject.org/files/ENCFF763BLG/@@download/ENCFF763BLG.fastq.gz Illumina HiSeq 2000 /files/ENCFF406IWG/, /files/ENCFF552UHO/ released missing genetic modification characterization ENCFF591FKI fastq reads ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 1 50 single-ended 789905897 Kevin White, UChicago f5675a1117868d60f0680da26838b010 SRA:SRR6213564 https://www.encodeproject.org/files/ENCFF591FKI/@@download/ENCFF591FKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF406IWG/, /files/ENCFF552UHO/ released missing genetic modification characterization ENCFF369FNW fastq reads ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 1 50 single-ended 1308254937 Kevin White, UChicago acf70cdbda9964c06870adcd9abcd8d6 SRA:SRR6213566 https://www.encodeproject.org/files/ENCFF369FNW/@@download/ENCFF369FNW.fastq.gz Illumina HiSeq 2500 /files/ENCFF406IWG/, /files/ENCFF552UHO/ released missing genetic modification characterization ENCFF508ZDE bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 50 ENCFF591FKI, ENCFF763BLG, ENCFF807MUK 1320069612 ENCODE Processing Pipeline d14b8113c8f486873823a046df5cc8b0 https://www.encodeproject.org/files/ENCFF508ZDE/@@download/ENCFF508ZDE.bam hg19 released missing genetic modification characterization ENCFF473TXL bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 50 ENCFF369FNW, ENCFF489GQR, ENCFF807MUK 1600592530 ENCODE Processing Pipeline b6f4dad460cf4cd0bdaae464b62ec521 https://www.encodeproject.org/files/ENCFF473TXL/@@download/ENCFF473TXL.bam hg19 released missing genetic modification characterization ENCFF041LCC bigWig signal p-value ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF266VDG, ENCFF473TXL 809076470 ENCODE Processing Pipeline ab694bc70bd8101ea62d2645c815f721 https://www.encodeproject.org/files/ENCFF041LCC/@@download/ENCFF041LCC.bigWig hg19 released missing genetic modification characterization ENCFF106SAA bigWig signal p-value ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF266VDG, ENCFF508ZDE 624236420 ENCODE Processing Pipeline ceeea2ed7f8c75e7fdb89282caefe6ca https://www.encodeproject.org/files/ENCFF106SAA/@@download/ENCFF106SAA.bigWig hg19 released missing genetic modification characterization ENCFF175SWA bigWig signal p-value ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF266VDG, ENCFF473TXL, ENCFF508ZDE 1004203051 ENCODE Processing Pipeline c5883662c66d3050519916bf306e067b https://www.encodeproject.org/files/ENCFF175SWA/@@download/ENCFF175SWA.bigWig hg19 released missing genetic modification characterization ENCFF641MUP bigWig fold change over control ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF266VDG, ENCFF473TXL 873650154 ENCODE Processing Pipeline 175993f51b906f209403ef2595367f75 https://www.encodeproject.org/files/ENCFF641MUP/@@download/ENCFF641MUP.bigWig hg19 released missing genetic modification characterization ENCFF343TEX bigBed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF839IXS 12927959 ENCODE Processing Pipeline d77db6c73c4fa79f2fe7ea1dc5f5f46f https://www.encodeproject.org/files/ENCFF343TEX/@@download/ENCFF343TEX.bigBed hg19 released missing genetic modification characterization ENCFF839IXS bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF266VDG, ENCFF508ZDE 6931086 ENCODE Processing Pipeline 8fe562fb6aaa19115d0302efb4fe971e https://www.encodeproject.org/files/ENCFF839IXS/@@download/ENCFF839IXS.bed.gz hg19 released missing genetic modification characterization ENCFF115HSX bigWig fold change over control ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF266VDG, ENCFF508ZDE 732382494 ENCODE Processing Pipeline 64bd11d561b2eebfa5c2755805a9ece1 https://www.encodeproject.org/files/ENCFF115HSX/@@download/ENCFF115HSX.bigWig hg19 released missing genetic modification characterization ENCFF029MZM bigWig fold change over control ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF266VDG, ENCFF473TXL, ENCFF508ZDE 1191206201 ENCODE Processing Pipeline 66d05bee3478817e4313d4aa14ffae73 https://www.encodeproject.org/files/ENCFF029MZM/@@download/ENCFF029MZM.bigWig hg19 released missing genetic modification characterization ENCFF189OTW bigBed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF234TBD 12773056 ENCODE Processing Pipeline 92f28e3e54e25bf142e3328e4210dac5 https://www.encodeproject.org/files/ENCFF189OTW/@@download/ENCFF189OTW.bigBed hg19 released missing genetic modification characterization ENCFF980ZNH bigBed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF603LKQ 12712958 ENCODE Processing Pipeline 81fdd74e781cf19f5b0790761c7fe90a https://www.encodeproject.org/files/ENCFF980ZNH/@@download/ENCFF980ZNH.bigBed hg19 released missing genetic modification characterization ENCFF603LKQ bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF266VDG, ENCFF473TXL 7251822 ENCODE Processing Pipeline a4ffb0ad4ba13a89b18dbdf27735fbf2 https://www.encodeproject.org/files/ENCFF603LKQ/@@download/ENCFF603LKQ.bed.gz hg19 released missing genetic modification characterization ENCFF234TBD bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF266VDG, ENCFF473TXL, ENCFF508ZDE 7326429 ENCODE Processing Pipeline fcabb37727935fcfa29107e5fa7be922 https://www.encodeproject.org/files/ENCFF234TBD/@@download/ENCFF234TBD.bed.gz hg19 released missing genetic modification characterization ENCFF298APG bam unfiltered alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 50 ENCFF591FKI, ENCFF643CGH, ENCFF763BLG 1755151482 ENCODE Processing Pipeline 3279465e1ac96b61de1b9435bba4019c https://www.encodeproject.org/files/ENCFF298APG/@@download/ENCFF298APG.bam GRCh38 released missing genetic modification characterization ENCFF867NNE bam unfiltered alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 50 ENCFF369FNW, ENCFF489GQR, ENCFF643CGH 2128271306 ENCODE Processing Pipeline f5785dffc3b5dc308c4f4e6a1b6405eb https://www.encodeproject.org/files/ENCFF867NNE/@@download/ENCFF867NNE.bam GRCh38 released missing genetic modification characterization ENCFF811CBJ bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 50 ENCFF591FKI, ENCFF643CGH, ENCFF763BLG 1319426906 ENCODE Processing Pipeline 3fda5edadf9bb7ad92783101437dd342 https://www.encodeproject.org/files/ENCFF811CBJ/@@download/ENCFF811CBJ.bam GRCh38 released missing genetic modification characterization ENCFF413VAR bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 50 ENCFF369FNW, ENCFF489GQR, ENCFF643CGH 1599928946 ENCODE Processing Pipeline 76ba98a993cafbe4541aae5600d6a2b7 https://www.encodeproject.org/files/ENCFF413VAR/@@download/ENCFF413VAR.bam GRCh38 released missing genetic modification characterization ENCFF396NMI bigWig signal p-value ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF228COG, ENCFF413VAR 907649200 ENCODE Processing Pipeline dea36319e69cfd4c57ed49eaa88b41c8 https://www.encodeproject.org/files/ENCFF396NMI/@@download/ENCFF396NMI.bigWig GRCh38 released missing genetic modification characterization ENCFF103UOG bigWig signal p-value ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF228COG, ENCFF413VAR, ENCFF811CBJ 1015566465 ENCODE Processing Pipeline 33308ae2ddb7e456cce7aedfd0edef21 https://www.encodeproject.org/files/ENCFF103UOG/@@download/ENCFF103UOG.bigWig GRCh38 released missing genetic modification characterization ENCFF145RLX bigWig signal p-value ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF228COG, ENCFF811CBJ 658613971 ENCODE Processing Pipeline 036d5316f2abc4ca784007b256f21807 https://www.encodeproject.org/files/ENCFF145RLX/@@download/ENCFF145RLX.bigWig GRCh38 released missing genetic modification characterization ENCFF783PIT bigWig fold change over control ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF228COG, ENCFF413VAR 854528632 ENCODE Processing Pipeline 02fdbf333aff30155d8f0a246ae70fe1 https://www.encodeproject.org/files/ENCFF783PIT/@@download/ENCFF783PIT.bigWig GRCh38 released missing genetic modification characterization ENCFF928FDU bigWig fold change over control ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF228COG, ENCFF811CBJ 737561078 ENCODE Processing Pipeline 85ffd3a5328d70424f8595f89ed90f25 https://www.encodeproject.org/files/ENCFF928FDU/@@download/ENCFF928FDU.bigWig GRCh38 released missing genetic modification characterization ENCFF447WWY bigWig fold change over control ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF228COG, ENCFF413VAR, ENCFF811CBJ 1204101150 ENCODE Processing Pipeline 38eae1edd7e804748a64a3f5b98665e0 https://www.encodeproject.org/files/ENCFF447WWY/@@download/ENCFF447WWY.bigWig GRCh38 released missing genetic modification characterization ENCFF430VKO bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF228COG, ENCFF811CBJ 6766996 ENCODE Processing Pipeline 8bee2bbf93f7a7cafc6066963ef7d776 https://www.encodeproject.org/files/ENCFF430VKO/@@download/ENCFF430VKO.bed.gz GRCh38 released missing genetic modification characterization ENCFF161HQY bed narrowPeak conservative idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF430VKO, ENCFF570SZP, ENCFF849NZN 166554 ENCODE Processing Pipeline c175dfd706b74d424680b547899b9fd1 https://www.encodeproject.org/files/ENCFF161HQY/@@download/ENCFF161HQY.bed.gz GRCh38 released missing genetic modification characterization ENCFF849NZN bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF228COG, ENCFF413VAR 7165845 ENCODE Processing Pipeline aba382f51e9a7cf5086dd2dafb4d373f https://www.encodeproject.org/files/ENCFF849NZN/@@download/ENCFF849NZN.bed.gz GRCh38 released missing genetic modification characterization ENCFF662IGC bigBed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF849NZN 12723227 ENCODE Processing Pipeline 2502866ff1643fa474ef448e3d9e8264 https://www.encodeproject.org/files/ENCFF662IGC/@@download/ENCFF662IGC.bigBed GRCh38 released missing genetic modification characterization ENCFF178TKV bigBed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF430VKO 12942556 ENCODE Processing Pipeline e706b5e3fe323ae748c2fe47c32623a8 https://www.encodeproject.org/files/ENCFF178TKV/@@download/ENCFF178TKV.bigBed GRCh38 released missing genetic modification characterization ENCFF413VDU bigBed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF570SZP 12771645 ENCODE Processing Pipeline eb897f7135583455b6a27c33e2c6d19b https://www.encodeproject.org/files/ENCFF413VDU/@@download/ENCFF413VDU.bigBed GRCh38 released missing genetic modification characterization ENCFF570SZP bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF228COG, ENCFF413VAR, ENCFF811CBJ 7288416 ENCODE Processing Pipeline eca6968170fa32a7d2dc5df8decce44b https://www.encodeproject.org/files/ENCFF570SZP/@@download/ENCFF570SZP.bed.gz GRCh38 released missing genetic modification characterization ENCFF977QPH bigBed narrowPeak conservative idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF161HQY 436646 ENCODE Processing Pipeline 7f63c849af4b08b37dcaf7ab1ce9263b https://www.encodeproject.org/files/ENCFF977QPH/@@download/ENCFF977QPH.bigBed GRCh38 released missing genetic modification characterization ENCFF881VGY bigBed narrowPeak optimal idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF648HOK 526778 ENCODE Processing Pipeline e59d662ed6f1444724cde96bce51cd5a https://www.encodeproject.org/files/ENCFF881VGY/@@download/ENCFF881VGY.bigBed GRCh38 released missing genetic modification characterization ENCFF648HOK bed narrowPeak optimal idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF419RSJ, ENCFF430VKO, ENCFF570SZP, ENCFF849NZN 213653 ENCODE Processing Pipeline 1aa554ff2ac7994786b4decb81308679 https://www.encodeproject.org/files/ENCFF648HOK/@@download/ENCFF648HOK.bed.gz GRCh38 released missing genetic modification characterization ENCFF532EKD bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 5581717446 Sunduz Keles, UW-M 3d943fe25fafbe60370480fe56ceecc6 https://www.encodeproject.org/files/ENCFF532EKD/@@download/ENCFF532EKD.bam hg19 released missing genetic modification characterization missing derived_from ENCFF522RGI bigBed narrowPeak conservative idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF115ZHW 324851 ENCODE Processing Pipeline 65487b1e056e326705a6fe6e32db2673 https://www.encodeproject.org/files/ENCFF522RGI/@@download/ENCFF522RGI.bigBed hg19 released missing genetic modification characterization ENCFF115ZHW bed narrowPeak conservative idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF234TBD, ENCFF603LKQ, ENCFF839IXS 131928 ENCODE Processing Pipeline 208e7ad0aae49e44f9e58beff4c86991 https://www.encodeproject.org/files/ENCFF115ZHW/@@download/ENCFF115ZHW.bed.gz hg19 released missing genetic modification characterization ENCFF494SQE bigBed narrowPeak optimal idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF529FWJ 394902 ENCODE Processing Pipeline 0a6388961bb4adbfa0c7ad3fa54b2cff https://www.encodeproject.org/files/ENCFF494SQE/@@download/ENCFF494SQE.bigBed hg19 released missing genetic modification characterization ENCFF529FWJ bed narrowPeak optimal idr thresholded peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1, 2 ENCFF001TDO, ENCFF234TBD, ENCFF603LKQ, ENCFF839IXS 176626 ENCODE Processing Pipeline 7207f9b5dcf5b4248227451b79664f04 https://www.encodeproject.org/files/ENCFF529FWJ/@@download/ENCFF529FWJ.bed.gz hg19 released missing genetic modification characterization ENCFF000WVN bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WWI 507496731 Michael Snyder, Stanford 0bb9e144cb32723287eb2706cbca6153 https://www.encodeproject.org/files/ENCFF000WVN/@@download/ENCFF000WVN.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVO bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WWK 420723629 Michael Snyder, Stanford 67f7856485fd48a43fa015a97ff2c5ac https://www.encodeproject.org/files/ENCFF000WVO/@@download/ENCFF000WVO.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVP bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHF 1773449 Michael Snyder, Stanford 4bab6dc2bb210c1f3a5d18298c2b0174 https://www.encodeproject.org/files/ENCFF000WVP/@@download/ENCFF000WVP.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVT bigWig signal ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 360743388 Michael Snyder, Stanford eb42840a364488bc2cb493dfbc4a44c4 https://www.encodeproject.org/files/ENCFF000WVT/@@download/ENCFF000WVT.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WWI fastq reads ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1064064581 Michael Snyder, Stanford 0dca6accb548219e0c7850dcdc1ff2c6 https://www.encodeproject.org/files/ENCFF000WWI/@@download/ENCFF000WWI.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WWK fastq reads ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1068424626 Michael Snyder, Stanford cd8e6957daaef606429e99fb5af307ad https://www.encodeproject.org/files/ENCFF000WWK/@@download/ENCFF000WWK.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VHF bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 664108 Michael Snyder, Stanford ae16de8f1b08001670a91a13e9fe5bb1 https://www.encodeproject.org/files/ENCFF001VHF/@@download/ENCFF001VHF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CRH bed narrowPeak optimal idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 416950 ENCODE Consortium Analysis Working Group 332fae3b1be780d35e98ab5fa0783687 https://www.encodeproject.org/files/ENCFF002CRH/@@download/ENCFF002CRH.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF015HRG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRH 1161178 ENCODE Consortium aa825a15e0e9678c401d4364e0bc4ef4 https://www.encodeproject.org/files/ENCFF015HRG/@@download/ENCFF015HRG.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF906DLE bam unfiltered alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWK, ENCFF643CGH 1250596626 ENCODE Processing Pipeline 849a7e0b5ce0706d07784fbf065221a9 https://www.encodeproject.org/files/ENCFF906DLE/@@download/ENCFF906DLE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF111DMT bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWK, ENCFF643CGH 730150773 ENCODE Processing Pipeline 374dc54c1136e96cb3d9f3f639d0ed5a https://www.encodeproject.org/files/ENCFF111DMT/@@download/ENCFF111DMT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF904SVM bam unfiltered alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWI, ENCFF643CGH 1241023820 ENCODE Processing Pipeline c74bd0a189c95ee6906744673f9721ee https://www.encodeproject.org/files/ENCFF904SVM/@@download/ENCFF904SVM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF814NIM bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWI, ENCFF643CGH 787799375 ENCODE Processing Pipeline 16b864fe365796daa0aaced7d50524e1 https://www.encodeproject.org/files/ENCFF814NIM/@@download/ENCFF814NIM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF287KNG bam unfiltered alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWK, ENCFF807MUK 1246025846 ENCODE Processing Pipeline 1a6d9eb57bac33dd984ed0e9e00733ee https://www.encodeproject.org/files/ENCFF287KNG/@@download/ENCFF287KNG.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF937OBB bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWI, ENCFF807MUK 788220396 ENCODE Processing Pipeline 1cbb397e0054bca414ca80ac00683b6d https://www.encodeproject.org/files/ENCFF937OBB/@@download/ENCFF937OBB.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF524AMP bam unfiltered alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWI, ENCFF807MUK 1237718451 ENCODE Processing Pipeline 84953290d9e44f8c022a139099d32fa7 https://www.encodeproject.org/files/ENCFF524AMP/@@download/ENCFF524AMP.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338MLT bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWK, ENCFF807MUK 730578539 ENCODE Processing Pipeline 92499164ff6c2f11084e4f1d447f0258 https://www.encodeproject.org/files/ENCFF338MLT/@@download/ENCFF338MLT.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF622GHY bigWig signal p-value ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF814NIM 622513021 ENCODE Processing Pipeline db0073a0b20928af30a74c127b292e94 https://www.encodeproject.org/files/ENCFF622GHY/@@download/ENCFF622GHY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF122YMV bigWig signal p-value ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF111DMT, ENCFF513EWK 591377757 ENCODE Processing Pipeline ade34e180bb9152ef784041b90d7d96b https://www.encodeproject.org/files/ENCFF122YMV/@@download/ENCFF122YMV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF515VTD bigWig fold change over control ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF111DMT, ENCFF513EWK 444818668 ENCODE Processing Pipeline 4012d5b965cb3d869dd2a1027b1b07d2 https://www.encodeproject.org/files/ENCFF515VTD/@@download/ENCFF515VTD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF124WHQ bigWig signal p-value ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF111DMT, ENCFF513EWK, ENCFF814NIM 776477040 ENCODE Processing Pipeline 5609489234244a468ba7e101c3ec65b5 https://www.encodeproject.org/files/ENCFF124WHQ/@@download/ENCFF124WHQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF747EIS bigWig fold change over control ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF814NIM 478401046 ENCODE Processing Pipeline 418f8ad702aacaa18fdd63fd13959125 https://www.encodeproject.org/files/ENCFF747EIS/@@download/ENCFF747EIS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF849UQH bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF111DMT, ENCFF513EWK 4918292 ENCODE Processing Pipeline 23a9f532f1513c465216266d3a749259 https://www.encodeproject.org/files/ENCFF849UQH/@@download/ENCFF849UQH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF052TRV bigWig fold change over control ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF111DMT, ENCFF513EWK, ENCFF814NIM 741729578 ENCODE Processing Pipeline 1851455bff1986116dcc4fd3ae31a477 https://www.encodeproject.org/files/ENCFF052TRV/@@download/ENCFF052TRV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF315ALQ bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF369PMA 13657028 ENCODE Processing Pipeline 64716c069cc0f07b5747862e5a9e076d https://www.encodeproject.org/files/ENCFF315ALQ/@@download/ENCFF315ALQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF161TNS bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF814NIM 5312797 ENCODE Processing Pipeline 859e7c69c3c6e0cc5978288e6fa4bc32 https://www.encodeproject.org/files/ENCFF161TNS/@@download/ENCFF161TNS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF132BHN bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF161TNS 13478989 ENCODE Processing Pipeline 036d79b38335ce4b3cf83c8f1350b1f8 https://www.encodeproject.org/files/ENCFF132BHN/@@download/ENCFF132BHN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF369PMA bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF111DMT, ENCFF513EWK, ENCFF814NIM 5601296 ENCODE Processing Pipeline 20c37baa815ed0e40429d244e3e39fea https://www.encodeproject.org/files/ENCFF369PMA/@@download/ENCFF369PMA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748YXF bed narrowPeak optimal idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF161TNS, ENCFF369PMA, ENCFF419RSJ, ENCFF849UQH 400085 ENCODE Processing Pipeline d91c6161ca0615e10045d7408ea25edb https://www.encodeproject.org/files/ENCFF748YXF/@@download/ENCFF748YXF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF061NNT bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF849UQH 11249122 ENCODE Processing Pipeline d1f7e173bb8d1ab383e9d729cf7a5ed6 https://www.encodeproject.org/files/ENCFF061NNT/@@download/ENCFF061NNT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF108YPE bed narrowPeak conservative idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF161TNS, ENCFF369PMA, ENCFF419RSJ, ENCFF849UQH 326718 ENCODE Processing Pipeline 4b01f6d786e7ed24db8a34b588129bd5 https://www.encodeproject.org/files/ENCFF108YPE/@@download/ENCFF108YPE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF531CZP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF108YPE 755359 ENCODE Processing Pipeline 159806af2c379f878fa6c0a5df30b3c3 https://www.encodeproject.org/files/ENCFF531CZP/@@download/ENCFF531CZP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF515XWW bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF748YXF 875593 ENCODE Processing Pipeline 72a7f1e537f176e0aaea722d77ba681b https://www.encodeproject.org/files/ENCFF515XWW/@@download/ENCFF515XWW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF686GYI bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF937OBB 5363076 ENCODE Processing Pipeline 61a0cea731b6e63dd21f5e200465a16f https://www.encodeproject.org/files/ENCFF686GYI/@@download/ENCFF686GYI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF907LGL bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF686GYI 13482513 ENCODE Processing Pipeline e75d6e49bdfeaff5a2bf493a6bf837da https://www.encodeproject.org/files/ENCFF907LGL/@@download/ENCFF907LGL.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF186CMX bigWig signal p-value ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF937OBB 643507982 ENCODE Processing Pipeline a22e92b79f2c79fd6b3250adacf56bb4 https://www.encodeproject.org/files/ENCFF186CMX/@@download/ENCFF186CMX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF646KVA bigWig signal p-value ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF338MLT, ENCFF599MVB 536866059 ENCODE Processing Pipeline 763da61f48ae9c07cf6c3b2b872521e0 https://www.encodeproject.org/files/ENCFF646KVA/@@download/ENCFF646KVA.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF563ALX bigWig fold change over control ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF338MLT, ENCFF599MVB 433840262 ENCODE Processing Pipeline 02c78b1c1de49f8abb12579f8808f31d https://www.encodeproject.org/files/ENCFF563ALX/@@download/ENCFF563ALX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF239SAM bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF182QYQ 751834 ENCODE Processing Pipeline ad30e212dfa7b984b304ec128ae66134 https://www.encodeproject.org/files/ENCFF239SAM/@@download/ENCFF239SAM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF264NWA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF629MBV 869654 ENCODE Processing Pipeline fb057f19120c5b2e7fd0846647a7bf1f https://www.encodeproject.org/files/ENCFF264NWA/@@download/ENCFF264NWA.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF348CSN bigWig fold change over control ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF338MLT, ENCFF599MVB, ENCFF937OBB 767659577 ENCODE Processing Pipeline e759405b5efc01aecae1ab9ef52cd32b https://www.encodeproject.org/files/ENCFF348CSN/@@download/ENCFF348CSN.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF730GTB bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF338MLT, ENCFF599MVB 4919522 ENCODE Processing Pipeline d96c7fbafbba39aed2bcba1c4d7bf41a https://www.encodeproject.org/files/ENCFF730GTB/@@download/ENCFF730GTB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF208DFV bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF338MLT, ENCFF599MVB, ENCFF937OBB 5603869 ENCODE Processing Pipeline 1de460ac9627488cb18023e40526f757 https://www.encodeproject.org/files/ENCFF208DFV/@@download/ENCFF208DFV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF717RJJ bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF208DFV 13653705 ENCODE Processing Pipeline 948dccbe061b3bf6830d920718cb4ec2 https://www.encodeproject.org/files/ENCFF717RJJ/@@download/ENCFF717RJJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF629MBV bed narrowPeak optimal idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF208DFV, ENCFF686GYI, ENCFF730GTB 395270 ENCODE Processing Pipeline 1461e05d9f74c404801d4b756e9f4c7e https://www.encodeproject.org/files/ENCFF629MBV/@@download/ENCFF629MBV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF396QSF bigWig fold change over control ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF937OBB 482432218 ENCODE Processing Pipeline 8c26911bf3df1d0b058dc8a5bdf3d11b https://www.encodeproject.org/files/ENCFF396QSF/@@download/ENCFF396QSF.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF162PZP bigBed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF730GTB 11241193 ENCODE Processing Pipeline ad3fa9f0711a45686876e3ac8c101e75 https://www.encodeproject.org/files/ENCFF162PZP/@@download/ENCFF162PZP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF815HLO bigWig signal p-value ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF338MLT, ENCFF599MVB, ENCFF937OBB 780979709 ENCODE Processing Pipeline 2c54590c871bed65344396a7d0513681 https://www.encodeproject.org/files/ENCFF815HLO/@@download/ENCFF815HLO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182QYQ bed narrowPeak conservative idr thresholded peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF208DFV, ENCFF686GYI, ENCFF730GTB 324397 ENCODE Processing Pipeline cdf5771aa9124344849ed2dae6123c14 https://www.encodeproject.org/files/ENCFF182QYQ/@@download/ENCFF182QYQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YET bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VLW 2247519 Michael Snyder, Stanford 34a6744079ed9151c96120fee4b6e000 https://www.encodeproject.org/files/ENCFF000YET/@@download/ENCFF000YET.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YEU fastq reads ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 994388532 Michael Snyder, Stanford 46eaac5b19fe4e74d5187bc120bf1e53 https://www.encodeproject.org/files/ENCFF000YEU/@@download/ENCFF000YEU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YEW fastq reads ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 514427388 Michael Snyder, Stanford d7ea18188f6f0c3706b343b7d6afba8c https://www.encodeproject.org/files/ENCFF000YEW/@@download/ENCFF000YEW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YEY bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 291617349 Michael Snyder, Stanford 8f4207cd3ef777b56e2320eb84f319fe https://www.encodeproject.org/files/ENCFF000YEY/@@download/ENCFF000YEY.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000YEZ bigWig signal ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 333432144 Michael Snyder, Stanford 4dca09c6e79410bec758fa62e6c3e184 https://www.encodeproject.org/files/ENCFF000YEZ/@@download/ENCFF000YEZ.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000YFA bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 574689898 Michael Snyder, Stanford aa43f59c59dd0b2fd5bfdc9d473c7de3 https://www.encodeproject.org/files/ENCFF000YFA/@@download/ENCFF000YFA.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001VLW bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 849854 Michael Snyder, Stanford cb26007d18a7cf24a0b680ad24cb1d4a https://www.encodeproject.org/files/ENCFF001VLW/@@download/ENCFF001VLW.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CVL bed narrowPeak optimal idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 209743 ENCODE Consortium Analysis Working Group 506383a9730f9b5869c629ba78084b51 https://www.encodeproject.org/files/ENCFF002CVL/@@download/ENCFF002CVL.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF276NII bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVL 460785 ENCODE Consortium 2cef5728b6a3e0e07561455370ae3b34 https://www.encodeproject.org/files/ENCFF276NII/@@download/ENCFF276NII.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF477DKP bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEW, ENCFF643CGH 388635127 ENCODE Processing Pipeline ac9518f66409973a1b72a0de1a98acfa https://www.encodeproject.org/files/ENCFF477DKP/@@download/ENCFF477DKP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF416CQL bam unfiltered alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEW, ENCFF643CGH 588227578 ENCODE Processing Pipeline 61a32e53820a9fea82d94fca2bd0bed0 https://www.encodeproject.org/files/ENCFF416CQL/@@download/ENCFF416CQL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF892CZA bam unfiltered alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEU, ENCFF643CGH 1141025074 ENCODE Processing Pipeline dc9a5c37dcc61974bfea48fed6c0926e https://www.encodeproject.org/files/ENCFF892CZA/@@download/ENCFF892CZA.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF495MEU bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEU, ENCFF643CGH 788890710 ENCODE Processing Pipeline 8615bb7baa4c26f56afe1e7650ece588 https://www.encodeproject.org/files/ENCFF495MEU/@@download/ENCFF495MEU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF102ROD bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEW, ENCFF807MUK 388976164 ENCODE Processing Pipeline 0049531f2ea1d75cab8036b8e3e47ea6 https://www.encodeproject.org/files/ENCFF102ROD/@@download/ENCFF102ROD.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF445GEM bam unfiltered alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEW, ENCFF807MUK 586128476 ENCODE Processing Pipeline 1fbafd13e2c722a1b0e4475f089ba97c https://www.encodeproject.org/files/ENCFF445GEM/@@download/ENCFF445GEM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF992ORW bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEU, ENCFF807MUK 789468149 ENCODE Processing Pipeline 7c69ea5f4bd02208a85eb420054f93a4 https://www.encodeproject.org/files/ENCFF992ORW/@@download/ENCFF992ORW.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF662SSM bam unfiltered alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEU, ENCFF807MUK 1136601662 ENCODE Processing Pipeline d2f39c322b1276d88b5f5200ef204164 https://www.encodeproject.org/files/ENCFF662SSM/@@download/ENCFF662SSM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF308EHN bigWig signal p-value ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF495MEU 458625873 ENCODE Processing Pipeline 21cd6766d37a87c023452d634965bcbc https://www.encodeproject.org/files/ENCFF308EHN/@@download/ENCFF308EHN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF783BTQ bigWig signal p-value ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF477DKP 339538064 ENCODE Processing Pipeline 877bf8bf128b8a771bdb2a7e68ce9adc https://www.encodeproject.org/files/ENCFF783BTQ/@@download/ENCFF783BTQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF243FEK bigWig signal p-value ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF477DKP, ENCFF495MEU 542135448 ENCODE Processing Pipeline 56896162d75327a1f3c4846824fe9671 https://www.encodeproject.org/files/ENCFF243FEK/@@download/ENCFF243FEK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF492UNF bigWig fold change over control ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF477DKP 237296359 ENCODE Processing Pipeline fb77bd7e05a2dffa64ffff42ed79c1c4 https://www.encodeproject.org/files/ENCFF492UNF/@@download/ENCFF492UNF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF741NSD bigWig fold change over control ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF495MEU 412164932 ENCODE Processing Pipeline 1075f04680626c8870edf4c8d9694a4e https://www.encodeproject.org/files/ENCFF741NSD/@@download/ENCFF741NSD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF424NIV bigWig fold change over control ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF477DKP, ENCFF495MEU 548450644 ENCODE Processing Pipeline 7c0cc25e864f5c2f3f7dab12079c79e3 https://www.encodeproject.org/files/ENCFF424NIV/@@download/ENCFF424NIV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF478PFP bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF495MEU 5188721 ENCODE Processing Pipeline c63f7f67ba202142b0eca0d01b5a1b2c https://www.encodeproject.org/files/ENCFF478PFP/@@download/ENCFF478PFP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF952GND bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF477DKP 4436184 ENCODE Processing Pipeline bd6e0623aead2f87c84242c26f8d1639 https://www.encodeproject.org/files/ENCFF952GND/@@download/ENCFF952GND.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF954ZUM bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF477DKP, ENCFF495MEU 5711942 ENCODE Processing Pipeline 96d3da87dc7d1915ec0f0a2e1656b9d1 https://www.encodeproject.org/files/ENCFF954ZUM/@@download/ENCFF954ZUM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF866ZQH bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF478PFP 10956097 ENCODE Processing Pipeline bacc080d1b35e7b5a104a8bb734f41dd https://www.encodeproject.org/files/ENCFF866ZQH/@@download/ENCFF866ZQH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF392UFW bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF952GND 10504149 ENCODE Processing Pipeline 01c4197b99026a33f30245f2161f5073 https://www.encodeproject.org/files/ENCFF392UFW/@@download/ENCFF392UFW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF272CWK bed narrowPeak conservative idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF478PFP, ENCFF952GND, ENCFF954ZUM 187740 ENCODE Processing Pipeline a277c342ec70c32bc1c8e1a6a8e4fe18 https://www.encodeproject.org/files/ENCFF272CWK/@@download/ENCFF272CWK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF757OML bed narrowPeak optimal idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF478PFP, ENCFF952GND, ENCFF954ZUM 202727 ENCODE Processing Pipeline 1470b97c347d6d31e38f0fb7655aa78f https://www.encodeproject.org/files/ENCFF757OML/@@download/ENCFF757OML.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF853UAI bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF954ZUM 13277245 ENCODE Processing Pipeline 084654a0c84580f99bfbc917a98ea6bc https://www.encodeproject.org/files/ENCFF853UAI/@@download/ENCFF853UAI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF672UGP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF272CWK 373568 ENCODE Processing Pipeline db513a4bc83be8051f18d8015c57cae0 https://www.encodeproject.org/files/ENCFF672UGP/@@download/ENCFF672UGP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF958PFY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF757OML 395063 ENCODE Processing Pipeline 05900771244f09e238c904c1f3352035 https://www.encodeproject.org/files/ENCFF958PFY/@@download/ENCFF958PFY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF378JGJ bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF992ORW 5188832 ENCODE Processing Pipeline 98ce87791b953d6bb2d7f3af8c7c40b1 https://www.encodeproject.org/files/ENCFF378JGJ/@@download/ENCFF378JGJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF732QKX bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF102ROD, ENCFF710NTS 4458460 ENCODE Processing Pipeline 7ecea1a5ecb46e2e36d17349a13d2f11 https://www.encodeproject.org/files/ENCFF732QKX/@@download/ENCFF732QKX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF783AFF bigWig fold change over control ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF992ORW 409980494 ENCODE Processing Pipeline bc413df52ba90a4d6519f261633c1334 https://www.encodeproject.org/files/ENCFF783AFF/@@download/ENCFF783AFF.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF506CVP bigWig signal p-value ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF992ORW 431244190 ENCODE Processing Pipeline 2dbca5e5d96284cb41947400f7f6590c https://www.encodeproject.org/files/ENCFF506CVP/@@download/ENCFF506CVP.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF498PBX bigWig signal p-value ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF102ROD, ENCFF710NTS 386742957 ENCODE Processing Pipeline f6b8eef85c69a3e0a6a9aa35b1eec70b https://www.encodeproject.org/files/ENCFF498PBX/@@download/ENCFF498PBX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF326BGM bigWig signal p-value ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF102ROD, ENCFF710NTS, ENCFF992ORW 573580145 ENCODE Processing Pipeline 78aee59b60d5c744eec429850f743eaf https://www.encodeproject.org/files/ENCFF326BGM/@@download/ENCFF326BGM.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF107YJY bigWig fold change over control ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF102ROD, ENCFF710NTS, ENCFF992ORW 566392064 ENCODE Processing Pipeline da4cbf876dca71232ba6eff6831f436b https://www.encodeproject.org/files/ENCFF107YJY/@@download/ENCFF107YJY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF442TTJ bigWig fold change over control ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF102ROD, ENCFF710NTS 237428518 ENCODE Processing Pipeline be9e1a4fbc37c0047662189d77534f31 https://www.encodeproject.org/files/ENCFF442TTJ/@@download/ENCFF442TTJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF411VNI bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF102ROD, ENCFF710NTS, ENCFF992ORW 5709734 ENCODE Processing Pipeline 9e5231e5c5f8289161374e1eeac19545 https://www.encodeproject.org/files/ENCFF411VNI/@@download/ENCFF411VNI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF974QZG bed narrowPeak conservative idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF378JGJ, ENCFF411VNI, ENCFF732QKX 184723 ENCODE Processing Pipeline 0945a2e7e430e667fd9ec3807819b393 https://www.encodeproject.org/files/ENCFF974QZG/@@download/ENCFF974QZG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF186VKS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF835KAT 395486 ENCODE Processing Pipeline f354eb8bde263bce61bc60775400e7b1 https://www.encodeproject.org/files/ENCFF186VKS/@@download/ENCFF186VKS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF910EUX bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF378JGJ 10951793 ENCODE Processing Pipeline eb56c140910d8334c81311e71da5d867 https://www.encodeproject.org/files/ENCFF910EUX/@@download/ENCFF910EUX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF678ZUX bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF732QKX 10504070 ENCODE Processing Pipeline 36be9e9b33d49850c782e2b6cadf5c29 https://www.encodeproject.org/files/ENCFF678ZUX/@@download/ENCFF678ZUX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF342NKD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF974QZG 367963 ENCODE Processing Pipeline 0cf6bc51bda77c95d74b92ae405f3529 https://www.encodeproject.org/files/ENCFF342NKD/@@download/ENCFF342NKD.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF835KAT bed narrowPeak optimal idr thresholded peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF378JGJ, ENCFF411VNI, ENCFF732QKX 203969 ENCODE Processing Pipeline 61a07b9ac21ac0103491a01c337814c1 https://www.encodeproject.org/files/ENCFF835KAT/@@download/ENCFF835KAT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF518OFI bigBed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF411VNI 13269881 ENCODE Processing Pipeline b1b59ce94472cc410c21c5082a2d98b7 https://www.encodeproject.org/files/ENCFF518OFI/@@download/ENCFF518OFI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001HXV bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HYR 411391581 John Stamatoyannopoulos, UW dd54cce4bf9e34be10fe294e482e815b https://www.encodeproject.org/files/ENCFF001HXV/@@download/ENCFF001HXV.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HXW bigBed broadPeak hotspots ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XTX 5722954 John Stamatoyannopoulos, UW fd5df58bc0e0122a18538e8860a4da5a https://www.encodeproject.org/files/ENCFF001HXW/@@download/ENCFF001HXW.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HXX bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HYG 564931078 John Stamatoyannopoulos, UW bb79ef9593ca24444a71632a9e0ac47d https://www.encodeproject.org/files/ENCFF001HXX/@@download/ENCFF001HXX.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HXY bigBed broadPeak hotspots ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XTY 5110367 John Stamatoyannopoulos, UW f62e1a13159b4938625d30a236f5259c https://www.encodeproject.org/files/ENCFF001HXY/@@download/ENCFF001HXY.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HXZ bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XTZ 1764682 John Stamatoyannopoulos, UW ef0f5614fac1ec7ec94b2c7c4d920dcb https://www.encodeproject.org/files/ENCFF001HXZ/@@download/ENCFF001HXZ.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HYA bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XUA 1013095 John Stamatoyannopoulos, UW c5bbbacf6cabb6fe5d5f0a1af878e1f0 https://www.encodeproject.org/files/ENCFF001HYA/@@download/ENCFF001HYA.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HYB bigWig raw signal ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXX 92800218 John Stamatoyannopoulos, UW 4e0dd5aed57d4cbfcf5687e33761a1d3 https://www.encodeproject.org/files/ENCFF001HYB/@@download/ENCFF001HYB.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HYD bigWig raw signal ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXV 85650386 John Stamatoyannopoulos, UW 5cac26b9b518cb1d81fae1fade91f3ba https://www.encodeproject.org/files/ENCFF001HYD/@@download/ENCFF001HYD.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HYG fastq reads ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 885191071 John Stamatoyannopoulos, UW 1fa14fae4f018726d0c03e6d36c7e442 https://www.encodeproject.org/files/ENCFF001HYG/@@download/ENCFF001HYG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HYO/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001HYR fastq reads ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 2651547315 John Stamatoyannopoulos, UW 98e48bb46170090f51a7054987556dd8 https://www.encodeproject.org/files/ENCFF001HYR/@@download/ENCFF001HYR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HYO/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XTX bed broadPeak hotspots ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXX 3383054 John Stamatoyannopoulos, UW 65968d574c3d7e4d9554e03507cc8e05 https://www.encodeproject.org/files/ENCFF001XTX/@@download/ENCFF001XTX.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XTY bed broadPeak hotspots ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXV 2782387 John Stamatoyannopoulos, UW 0f646f61cacfe0f21c78dbfe961b4634 https://www.encodeproject.org/files/ENCFF001XTY/@@download/ENCFF001XTY.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XTZ bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXX 1091092 John Stamatoyannopoulos, UW 8b4e4973819a7b9f556172882199b3d9 https://www.encodeproject.org/files/ENCFF001XTZ/@@download/ENCFF001XTZ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XUA bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXV 713584 John Stamatoyannopoulos, UW d3b4032778c0d2aae425952ac89ed139 https://www.encodeproject.org/files/ENCFF001XUA/@@download/ENCFF001XUA.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF002DDS bed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HXV, ENCFF001HXX 962837 ENCODE Consortium Analysis Working Group 33fb2c5fb01abb7070faf899450686be https://www.encodeproject.org/files/ENCFF002DDS/@@download/ENCFF002DDS.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF146JQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDS 1660447 ENCODE Consortium 5d6f5a9b9e11df30e0553a06bc74b669 https://www.encodeproject.org/files/ENCFF146JQV/@@download/ENCFF146JQV.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF232FBS bam unfiltered alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HYG, ENCFF643CGH 940920014 ENCODE Processing Pipeline 6c579ce461c5b7736221ee557ce3205e https://www.encodeproject.org/files/ENCFF232FBS/@@download/ENCFF232FBS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF484GTY bam unfiltered alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HYR, ENCFF643CGH 2934594183 ENCODE Processing Pipeline 3028f4db919c3a2a0bb3b0e6edfee6c5 https://www.encodeproject.org/files/ENCFF484GTY/@@download/ENCFF484GTY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF409RTN bam unfiltered alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HYG, ENCFF807MUK 939137507 ENCODE Processing Pipeline 0e97ec4bc2d9043f7e57cd9f95e6f929 https://www.encodeproject.org/files/ENCFF409RTN/@@download/ENCFF409RTN.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF633OXE bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HYG, ENCFF643CGH 463125741 ENCODE Processing Pipeline 985ca1c7172126ab0c9d6b307cbaf209 https://www.encodeproject.org/files/ENCFF633OXE/@@download/ENCFF633OXE.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF252PEN bam unfiltered alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HYR, ENCFF807MUK 2928907131 ENCODE Processing Pipeline c268f4a4a4103f7ec221943c6b049d28 https://www.encodeproject.org/files/ENCFF252PEN/@@download/ENCFF252PEN.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF925VPT bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HYR, ENCFF643CGH 564498857 ENCODE Processing Pipeline 39da57c940f8d188bb8ffb4be61460a7 https://www.encodeproject.org/files/ENCFF925VPT/@@download/ENCFF925VPT.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF171VRI bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HYG, ENCFF807MUK 463532158 ENCODE Processing Pipeline b2a4684d57d6f3759a9ec092726b9bf1 https://www.encodeproject.org/files/ENCFF171VRI/@@download/ENCFF171VRI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF025QGP bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HYR, ENCFF807MUK 564977367 ENCODE Processing Pipeline 534fd6ef10a4a8fc6212d2d41d6c429d https://www.encodeproject.org/files/ENCFF025QGP/@@download/ENCFF025QGP.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF559PTU bigWig signal p-value ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF497TEA, ENCFF925VPT 263858569 ENCODE Processing Pipeline 65a529300126d4ddd0df1ea5e9f871ad https://www.encodeproject.org/files/ENCFF559PTU/@@download/ENCFF559PTU.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF974RYP bigWig signal p-value ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF025QGP, ENCFF171VRI, ENCFF627YEZ 329695081 ENCODE Processing Pipeline 24118ae757e25775e1550762e06a26cc https://www.encodeproject.org/files/ENCFF974RYP/@@download/ENCFF974RYP.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF268TDR bigWig signal p-value ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF497TEA, ENCFF633OXE 294345605 ENCODE Processing Pipeline 1bb6a33fd85130d0afb094a143c55b71 https://www.encodeproject.org/files/ENCFF268TDR/@@download/ENCFF268TDR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF086YRD bigWig signal p-value ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF025QGP, ENCFF627YEZ 338344977 ENCODE Processing Pipeline bafc971b94b1608328e3167e4b7ad080 https://www.encodeproject.org/files/ENCFF086YRD/@@download/ENCFF086YRD.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF022HQP bigWig fold change over control ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF497TEA, ENCFF925VPT 186450332 ENCODE Processing Pipeline d1f5b71d32a703b70a33d2f28a0523da https://www.encodeproject.org/files/ENCFF022HQP/@@download/ENCFF022HQP.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF951PFL bigWig signal p-value ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF171VRI, ENCFF627YEZ 303445202 ENCODE Processing Pipeline a1012a5b4320f704132d80ab4ff3d4cd https://www.encodeproject.org/files/ENCFF951PFL/@@download/ENCFF951PFL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF309KOK bigWig fold change over control ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF171VRI, ENCFF627YEZ 161195987 ENCODE Processing Pipeline af60ab3b6a7278444d00d85ba15d708a https://www.encodeproject.org/files/ENCFF309KOK/@@download/ENCFF309KOK.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF508KUT bigWig signal p-value ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF497TEA, ENCFF633OXE, ENCFF925VPT 329276713 ENCODE Processing Pipeline 07903956b1dead277766a0d4fd015ad7 https://www.encodeproject.org/files/ENCFF508KUT/@@download/ENCFF508KUT.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF231IUJ bigWig fold change over control ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF025QGP, ENCFF627YEZ 185300670 ENCODE Processing Pipeline d619eeda344bc14f1e00e27ccae3b5e9 https://www.encodeproject.org/files/ENCFF231IUJ/@@download/ENCFF231IUJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF147GBS bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF497TEA, ENCFF633OXE 3391376 ENCODE Processing Pipeline 50f81005561bc7255c796d2fb6ccd057 https://www.encodeproject.org/files/ENCFF147GBS/@@download/ENCFF147GBS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF305VFR bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF825LYF 9878403 ENCODE Processing Pipeline d6691c6620121870fb3d0948daed6f26 https://www.encodeproject.org/files/ENCFF305VFR/@@download/ENCFF305VFR.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF704AEU bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF837XNW 9874127 ENCODE Processing Pipeline 7a39a25589d546acb4dc06cf1c898f4b https://www.encodeproject.org/files/ENCFF704AEU/@@download/ENCFF704AEU.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF924OMX bed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF437VBU, ENCFF641GOK, ENCFF837XNW 890963 ENCODE Processing Pipeline 85e198d151d13048fd43f592ae2d1063 https://www.encodeproject.org/files/ENCFF924OMX/@@download/ENCFF924OMX.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF737AXD bigWig fold change over control ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF497TEA, ENCFF633OXE 160963619 ENCODE Processing Pipeline ecc5468748da43b3dace2485bd7c81a6 https://www.encodeproject.org/files/ENCFF737AXD/@@download/ENCFF737AXD.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF710HXB bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF147GBS 8256614 ENCODE Processing Pipeline 593df07dc42612ba2eb453f29c2e3eb8 https://www.encodeproject.org/files/ENCFF710HXB/@@download/ENCFF710HXB.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF681LRH bed narrowPeak conservative idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF437VBU, ENCFF641GOK, ENCFF837XNW 804939 ENCODE Processing Pipeline c72dd363c4556e432f57e2363ca32da1 https://www.encodeproject.org/files/ENCFF681LRH/@@download/ENCFF681LRH.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF825LYF bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF497TEA, ENCFF925VPT 4098219 ENCODE Processing Pipeline 68fd96c9aa471af9a8fa085030a42a0f https://www.encodeproject.org/files/ENCFF825LYF/@@download/ENCFF825LYF.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF641GOK bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF171VRI, ENCFF627YEZ 3380690 ENCODE Processing Pipeline 18c82b43513367dfcefb9a9627bf4994 https://www.encodeproject.org/files/ENCFF641GOK/@@download/ENCFF641GOK.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF492UJB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF681LRH 1420251 ENCODE Processing Pipeline b7c05881350935259a4aca947e5c1728 https://www.encodeproject.org/files/ENCFF492UJB/@@download/ENCFF492UJB.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF837XNW bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF025QGP, ENCFF627YEZ 4094993 ENCODE Processing Pipeline 6fd0e2c1d8d4cdeef8c15beacf5af599 https://www.encodeproject.org/files/ENCFF837XNW/@@download/ENCFF837XNW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF983ZLE bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF428ZQS 11007148 ENCODE Processing Pipeline b39a3e3e3130832b073c3ed63888cb56 https://www.encodeproject.org/files/ENCFF983ZLE/@@download/ENCFF983ZLE.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF900NOW bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF437VBU 10945541 ENCODE Processing Pipeline 09301e3b86bf8687eeabb1713fe41e15 https://www.encodeproject.org/files/ENCFF900NOW/@@download/ENCFF900NOW.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF797EGR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF924OMX 1534413 ENCODE Processing Pipeline 1192928fafef75d23e674fa21de9d7c7 https://www.encodeproject.org/files/ENCFF797EGR/@@download/ENCFF797EGR.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF376FYZ bigWig fold change over control ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF025QGP, ENCFF171VRI, ENCFF627YEZ 302697090 ENCODE Processing Pipeline e4ddbb3399587422448e18461c7d4fff https://www.encodeproject.org/files/ENCFF376FYZ/@@download/ENCFF376FYZ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF428ZQS bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF497TEA, ENCFF633OXE, ENCFF925VPT 4813218 ENCODE Processing Pipeline 682f83fc099ac5f7fef929c05f5d5338 https://www.encodeproject.org/files/ENCFF428ZQS/@@download/ENCFF428ZQS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF173BVP bigBed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF641GOK 8236220 ENCODE Processing Pipeline da062579aea87a26b9426c70ff400383 https://www.encodeproject.org/files/ENCFF173BVP/@@download/ENCFF173BVP.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF505BGP bed narrowPeak conservative idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF147GBS, ENCFF419RSJ, ENCFF428ZQS, ENCFF825LYF 814441 ENCODE Processing Pipeline 0a286529c5c9c8e6a62ca76ea7c08750 https://www.encodeproject.org/files/ENCFF505BGP/@@download/ENCFF505BGP.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF218AQX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF505BGP 1439946 ENCODE Processing Pipeline 9869411cea25b371e7f2a293a7c6472e https://www.encodeproject.org/files/ENCFF218AQX/@@download/ENCFF218AQX.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF262ZOT bed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF147GBS, ENCFF419RSJ, ENCFF428ZQS, ENCFF825LYF 901448 ENCODE Processing Pipeline bc7609823702456884e7fa15510e9683 https://www.encodeproject.org/files/ENCFF262ZOT/@@download/ENCFF262ZOT.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF548YUO bigWig fold change over control ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF497TEA, ENCFF633OXE, ENCFF925VPT 301185966 ENCODE Processing Pipeline 626677accc25cf19dde5ff2ca5257fd8 https://www.encodeproject.org/files/ENCFF548YUO/@@download/ENCFF548YUO.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF437VBU bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF025QGP, ENCFF171VRI, ENCFF627YEZ 4767932 ENCODE Processing Pipeline 9c022d553f8c101946af76439987697b https://www.encodeproject.org/files/ENCFF437VBU/@@download/ENCFF437VBU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF257AGC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF262ZOT 1557322 ENCODE Processing Pipeline 9e4ae928cc34bdbe80dc15f621def323 https://www.encodeproject.org/files/ENCFF257AGC/@@download/ENCFF257AGC.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000OVG bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OVN 475403721 Richard Myers, HAIB c70643e61d30978e69e9b1195ba3b656 https://www.encodeproject.org/files/ENCFF000OVG/@@download/ENCFF000OVG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OVH bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OVP 666182759 Richard Myers, HAIB 9b9baadb59e6b0b0962589f9459ca582 https://www.encodeproject.org/files/ENCFF000OVH/@@download/ENCFF000OVH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OVJ bigBed broadPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCW 333495 Richard Myers, HAIB 3f0c31133fd3147e0566a267d56d2429 https://www.encodeproject.org/files/ENCFF000OVJ/@@download/ENCFF000OVJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OVK bigBed broadPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCX 552772 Richard Myers, HAIB 5705ae45381210ac3f905566b1f49a75 https://www.encodeproject.org/files/ENCFF000OVK/@@download/ENCFF000OVK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OVL bigWig raw signal ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 3170082 Richard Myers, HAIB cba88f1ca34b4aba24c30e1bb36e01f1 https://www.encodeproject.org/files/ENCFF000OVL/@@download/ENCFF000OVL.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000OVM bigWig raw signal ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 7582512 Richard Myers, HAIB 1996f0d947cb96da85593c12e19ddf02 https://www.encodeproject.org/files/ENCFF000OVM/@@download/ENCFF000OVM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000OVN fastq reads ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 608296493 Richard Myers, HAIB bcfe8571277c6d9a7b1f9947aaf41ef4 https://www.encodeproject.org/files/ENCFF000OVN/@@download/ENCFF000OVN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OVP fastq reads ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 621658763 Richard Myers, HAIB 02e4d8c06298bdf70690275cc168b8a8 https://www.encodeproject.org/files/ENCFF000OVP/@@download/ENCFF000OVP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UCW bed broadPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 197125 Richard Myers, HAIB 876ca0b9a5bd75fdab44c8f83d45b03f https://www.encodeproject.org/files/ENCFF001UCW/@@download/ENCFF001UCW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UCX bed broadPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 373179 Richard Myers, HAIB 8c9872933110be37080b49f879f1fcba https://www.encodeproject.org/files/ENCFF001UCX/@@download/ENCFF001UCX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF002CJQ bed narrowPeak optimal idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 151751 ENCODE Consortium Analysis Working Group b2ae3c4f14cd0925547fce472ce96e1b https://www.encodeproject.org/files/ENCFF002CJQ/@@download/ENCFF002CJQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF806KWU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJQ 296192 ENCODE Consortium 05e6499e0e4faab2999825a9450ffb89 https://www.encodeproject.org/files/ENCFF806KWU/@@download/ENCFF806KWU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF244WMU bam unfiltered alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVP, ENCFF643CGH 819757804 ENCODE Processing Pipeline 523bc4f7250561887b9edd66cacaa787 https://www.encodeproject.org/files/ENCFF244WMU/@@download/ENCFF244WMU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF269TPC bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVP, ENCFF643CGH 510657644 ENCODE Processing Pipeline a665a2fd8bf83ac05d7fecbb2070bc25 https://www.encodeproject.org/files/ENCFF269TPC/@@download/ENCFF269TPC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF851QUM bam unfiltered alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVN, ENCFF643CGH 785498724 ENCODE Processing Pipeline ca28aceaf617d981467885e0834cea7f https://www.encodeproject.org/files/ENCFF851QUM/@@download/ENCFF851QUM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF421BPV bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVN, ENCFF643CGH 401881181 ENCODE Processing Pipeline de3b1d9ccb79c9d84271772eeb5d3b30 https://www.encodeproject.org/files/ENCFF421BPV/@@download/ENCFF421BPV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF944UGX bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVP, ENCFF807MUK 511011181 ENCODE Processing Pipeline 6c73028c19d1c442089fdc207f3a1b8b https://www.encodeproject.org/files/ENCFF944UGX/@@download/ENCFF944UGX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF283GJG bam unfiltered alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVP, ENCFF807MUK 817426704 ENCODE Processing Pipeline 35e8771b25c1490c740863f0ae158e32 https://www.encodeproject.org/files/ENCFF283GJG/@@download/ENCFF283GJG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF513ODJ bam unfiltered alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVN, ENCFF807MUK 783098398 ENCODE Processing Pipeline e224351b5b6ecf8469a0661bd9101a9a https://www.encodeproject.org/files/ENCFF513ODJ/@@download/ENCFF513ODJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF381JSU bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVN, ENCFF807MUK 402231416 ENCODE Processing Pipeline 0ad71624e619712962e90161d47b7b97 https://www.encodeproject.org/files/ENCFF381JSU/@@download/ENCFF381JSU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF894KCB bigWig signal p-value ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF269TPC 336183387 ENCODE Processing Pipeline 2116a8074a4670032dddf7ad8e25a854 https://www.encodeproject.org/files/ENCFF894KCB/@@download/ENCFF894KCB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF143RCD bigWig fold change over control ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF421BPV 213606208 ENCODE Processing Pipeline a333f71b0f10ad3f53a5abd002a8dea7 https://www.encodeproject.org/files/ENCFF143RCD/@@download/ENCFF143RCD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF716ZUV bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF269TPC, ENCFF421BPV 4958868 ENCODE Processing Pipeline d2a6bee212397c787185eaaca6fdd0d2 https://www.encodeproject.org/files/ENCFF716ZUV/@@download/ENCFF716ZUV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF437BRM bigWig signal p-value ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF421BPV 439744160 ENCODE Processing Pipeline 6cc2a02925debb337ffe7e80e3ca8257 https://www.encodeproject.org/files/ENCFF437BRM/@@download/ENCFF437BRM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF459RRL bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF421BPV 4168437 ENCODE Processing Pipeline a02f1e630c483f34de954c37a17cef33 https://www.encodeproject.org/files/ENCFF459RRL/@@download/ENCFF459RRL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF105JYR bigBed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF700SBL 10327335 ENCODE Processing Pipeline 4974cbbad13b081e38e687a5115a4bdf https://www.encodeproject.org/files/ENCFF105JYR/@@download/ENCFF105JYR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF763DIS bigBed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF459RRL 10199492 ENCODE Processing Pipeline 75401ca027b7353c150666fa30e4c6c0 https://www.encodeproject.org/files/ENCFF763DIS/@@download/ENCFF763DIS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF264OCQ bed narrowPeak conservative idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF459RRL, ENCFF700SBL, ENCFF716ZUV 150113 ENCODE Processing Pipeline 3bf12e1a9b42fbeb9d1e5c7309bf75ac https://www.encodeproject.org/files/ENCFF264OCQ/@@download/ENCFF264OCQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF978PZL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF264OCQ 287432 ENCODE Processing Pipeline 1131db0e57b8540940a210936ccb0308 https://www.encodeproject.org/files/ENCFF978PZL/@@download/ENCFF978PZL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF548GTM bigWig fold change over control ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF269TPC 244044939 ENCODE Processing Pipeline 8b760c3b7ca905724b5ff10ec53652ea https://www.encodeproject.org/files/ENCFF548GTM/@@download/ENCFF548GTM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF715MYQ bigWig fold change over control ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF269TPC, ENCFF421BPV 414981282 ENCODE Processing Pipeline 53adca815fc7bf2804909e1227297afd https://www.encodeproject.org/files/ENCFF715MYQ/@@download/ENCFF715MYQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF700SBL bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF269TPC 4237398 ENCODE Processing Pipeline 22cdda36f4bf8764d01e681cde6fb47e https://www.encodeproject.org/files/ENCFF700SBL/@@download/ENCFF700SBL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF740HPV bed narrowPeak optimal idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF459RRL, ENCFF700SBL, ENCFF716ZUV 201307 ENCODE Processing Pipeline c24e29c6e2b2b45cbf81d057dd2e7e56 https://www.encodeproject.org/files/ENCFF740HPV/@@download/ENCFF740HPV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF277KGF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF740HPV 352427 ENCODE Processing Pipeline 486e1fad84f49b0a1556e1dc47f44e54 https://www.encodeproject.org/files/ENCFF277KGF/@@download/ENCFF277KGF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF594EPA bigWig signal p-value ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF269TPC, ENCFF421BPV 584229153 ENCODE Processing Pipeline ce90ee8fb343fd72a933343d40e6991b https://www.encodeproject.org/files/ENCFF594EPA/@@download/ENCFF594EPA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF656TKK bigBed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF716ZUV 10990548 ENCODE Processing Pipeline fd5129bc5c9512fe83309bb70af6b18d https://www.encodeproject.org/files/ENCFF656TKK/@@download/ENCFF656TKK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF794CBC bigWig signal p-value ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944UGX 390302667 ENCODE Processing Pipeline c4ac0e5f5af410187867b94984cfaca1 https://www.encodeproject.org/files/ENCFF794CBC/@@download/ENCFF794CBC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF720VAO bigWig fold change over control ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944UGX 250486221 ENCODE Processing Pipeline b81b60d1639fd858f5c00f8943a05801 https://www.encodeproject.org/files/ENCFF720VAO/@@download/ENCFF720VAO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF589OXP bigWig signal p-value ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF381JSU 367958239 ENCODE Processing Pipeline 4d0d04a86c33801813e33008a6f201f7 https://www.encodeproject.org/files/ENCFF589OXP/@@download/ENCFF589OXP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF152FJA bigWig signal p-value ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF381JSU, ENCFF944UGX 584365019 ENCODE Processing Pipeline e9b6ba30cb417e180e3f0dab3507c96d https://www.encodeproject.org/files/ENCFF152FJA/@@download/ENCFF152FJA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF817ADZ bigWig fold change over control ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF381JSU 221976457 ENCODE Processing Pipeline a9f6668baffe84a895cff06c7047c5c6 https://www.encodeproject.org/files/ENCFF817ADZ/@@download/ENCFF817ADZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF219PTZ bigWig fold change over control ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF381JSU, ENCFF944UGX 414881266 ENCODE Processing Pipeline c13a174542cde6a3c7f37ff5ab6389e6 https://www.encodeproject.org/files/ENCFF219PTZ/@@download/ENCFF219PTZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF484CNV bigBed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF447CBR 10347681 ENCODE Processing Pipeline 69bd13c854263c9dd3fac2762dd0bdf9 https://www.encodeproject.org/files/ENCFF484CNV/@@download/ENCFF484CNV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF282OST bigBed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF500IOB 10156177 ENCODE Processing Pipeline d07b21ca034f1b5fa524c1f21d5d235e https://www.encodeproject.org/files/ENCFF282OST/@@download/ENCFF282OST.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF447CBR bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944UGX 4256875 ENCODE Processing Pipeline 43a6bd90f2e0ce6d0488f8de3e1fda68 https://www.encodeproject.org/files/ENCFF447CBR/@@download/ENCFF447CBR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF143RTQ bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF381JSU, ENCFF944UGX 5034692 ENCODE Processing Pipeline 26bd11a7bbb57c33916bbc86513f1641 https://www.encodeproject.org/files/ENCFF143RTQ/@@download/ENCFF143RTQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF088IWH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF674PTY 287032 ENCODE Processing Pipeline a93472a74393ba606e8fbf307619c80d https://www.encodeproject.org/files/ENCFF088IWH/@@download/ENCFF088IWH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF274AQE bed narrowPeak optimal idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF143RTQ, ENCFF447CBR, ENCFF500IOB 194337 ENCODE Processing Pipeline faca2edfad31759b309588367cc6d3bb https://www.encodeproject.org/files/ENCFF274AQE/@@download/ENCFF274AQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF619ZEP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274AQE 341375 ENCODE Processing Pipeline c94439133010602063b1776f55f2fed0 https://www.encodeproject.org/files/ENCFF619ZEP/@@download/ENCFF619ZEP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF500IOB bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF381JSU 4137847 ENCODE Processing Pipeline 9fe0a156a59581ab25f0d64e83dd3461 https://www.encodeproject.org/files/ENCFF500IOB/@@download/ENCFF500IOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF035BFG bigBed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF143RTQ 11078716 ENCODE Processing Pipeline cb3efe8fe7519c3ee57537b010cc9605 https://www.encodeproject.org/files/ENCFF035BFG/@@download/ENCFF035BFG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF674PTY bed narrowPeak conservative idr thresholded peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF143RTQ, ENCFF447CBR, ENCFF500IOB 150308 ENCODE Processing Pipeline 603a9d07ff0a198581f2129c4e7ee280 https://www.encodeproject.org/files/ENCFF674PTY/@@download/ENCFF674PTY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF441NRT bam unfiltered alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF349DXW, ENCFF660MJG, ENCFF807MUK 5039918311 ENCODE Processing Pipeline faf7934ca25e596b004857eb5c55852a https://www.encodeproject.org/files/ENCFF441NRT/@@download/ENCFF441NRT.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF320XMR bam unfiltered alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF277CCO, ENCFF529BRM, ENCFF807MUK 4054806967 ENCODE Processing Pipeline 4e5c18b43e15553e69bc79c265f5a837 https://www.encodeproject.org/files/ENCFF320XMR/@@download/ENCFF320XMR.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF349DXW fastq reads ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 1 ENCFF660MJG 2222208371 Michael Snyder, Stanford 3cddd6f9861a03e552067fabc4c15bd4 SRA:SRR5111420 https://www.encodeproject.org/files/ENCFF349DXW/@@download/ENCFF349DXW.fastq.gz Illumina HiSeq 2000 /files/ENCFF760WPA/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF277CCO fastq reads ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 2 ENCFF529BRM 1842084903 Michael Snyder, Stanford e39cc7598bd71c76b9ed2239f2fa5896 SRA:SRR5111421 https://www.encodeproject.org/files/ENCFF277CCO/@@download/ENCFF277CCO.fastq.gz Illumina HiSeq 2000 /files/ENCFF950USL/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF660MJG fastq reads ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 1 100 paired-ended 2 ENCFF349DXW 2381079346 Michael Snyder, Stanford c0e90118477f05b270f36d7a4a483c00 SRA:SRR5111420 https://www.encodeproject.org/files/ENCFF660MJG/@@download/ENCFF660MJG.fastq.gz Illumina HiSeq 2000 /files/ENCFF950USL/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF529BRM fastq reads ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 1 100 paired-ended 1 ENCFF277CCO 1781896662 Michael Snyder, Stanford 3a8ed29e7c367b506271cdb0914417cc SRA:SRR5111421 https://www.encodeproject.org/files/ENCFF529BRM/@@download/ENCFF529BRM.fastq.gz Illumina HiSeq 2000 /files/ENCFF760WPA/ released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF860REV bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF277CCO, ENCFF529BRM, ENCFF807MUK 3235888168 ENCODE Processing Pipeline d59992f3f536c1b6f3fb1ac5a6415cbe https://www.encodeproject.org/files/ENCFF860REV/@@download/ENCFF860REV.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF400FDW bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF349DXW, ENCFF660MJG, ENCFF807MUK 4096252330 ENCODE Processing Pipeline 0f488a08976baae851e5279618817f3b https://www.encodeproject.org/files/ENCFF400FDW/@@download/ENCFF400FDW.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF283GJL bigWig signal p-value ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF124STW, ENCFF860REV 927509629 ENCODE Processing Pipeline 5b7d757f561d87bb7107b421fdd7d8fe https://www.encodeproject.org/files/ENCFF283GJL/@@download/ENCFF283GJL.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF169NAG bigWig signal p-value ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF124STW, ENCFF400FDW 929120170 ENCODE Processing Pipeline 269069d817a3a46e80e4f77101a07840 https://www.encodeproject.org/files/ENCFF169NAG/@@download/ENCFF169NAG.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF897WDU bigWig signal p-value ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF124STW, ENCFF400FDW, ENCFF860REV 1124505543 ENCODE Processing Pipeline 924fca83fa23609c9566414d47990ec5 https://www.encodeproject.org/files/ENCFF897WDU/@@download/ENCFF897WDU.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF785XZC bigWig fold change over control ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF124STW, ENCFF860REV 874720448 ENCODE Processing Pipeline 62c95a575c980f455fa206befb9d6747 https://www.encodeproject.org/files/ENCFF785XZC/@@download/ENCFF785XZC.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF760VSW bigWig fold change over control ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF124STW, ENCFF400FDW 969100650 ENCODE Processing Pipeline 66777b0f17202406358852f56a164f3d https://www.encodeproject.org/files/ENCFF760VSW/@@download/ENCFF760VSW.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF981LHO bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF124STW, ENCFF860REV 5953388 ENCODE Processing Pipeline 20b265d3d51a939bbb83700dca54c959 https://www.encodeproject.org/files/ENCFF981LHO/@@download/ENCFF981LHO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF997ETO bigWig fold change over control ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF124STW, ENCFF400FDW, ENCFF860REV 1414624457 ENCODE Processing Pipeline a66d58438be0084e7987c25fac27c840 https://www.encodeproject.org/files/ENCFF997ETO/@@download/ENCFF997ETO.bigWig hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF351JUL bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF124STW, ENCFF400FDW, ENCFF860REV 6972262 ENCODE Processing Pipeline e0d0cbad321bdcda11cb355184863281 https://www.encodeproject.org/files/ENCFF351JUL/@@download/ENCFF351JUL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF065BIE bigBed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF351JUL 13244308 ENCODE Processing Pipeline b297aab337bd4f0b1e72cb0c0c285b1e https://www.encodeproject.org/files/ENCFF065BIE/@@download/ENCFF065BIE.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF069PPO bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF124STW, ENCFF400FDW 6175393 ENCODE Processing Pipeline 6641e81b3eae2a5e024312e55a53bba0 https://www.encodeproject.org/files/ENCFF069PPO/@@download/ENCFF069PPO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF062ZTH bigBed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF069PPO 11174584 ENCODE Processing Pipeline ce85eb0023fab05532f98b678d23089a https://www.encodeproject.org/files/ENCFF062ZTH/@@download/ENCFF062ZTH.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF637RAZ bigBed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF981LHO 11238617 ENCODE Processing Pipeline b139b4088efbdce744eef1ec9d171106 https://www.encodeproject.org/files/ENCFF637RAZ/@@download/ENCFF637RAZ.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF102GIR bam unfiltered alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF277CCO, ENCFF529BRM, ENCFF643CGH 4062223023 ENCODE Processing Pipeline 3db60e29d3f17664ce80e0f31122ce0a https://www.encodeproject.org/files/ENCFF102GIR/@@download/ENCFF102GIR.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF109QZW bam unfiltered alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF349DXW, ENCFF643CGH, ENCFF660MJG 5047240773 ENCODE Processing Pipeline 6c7db2c12dd80074f843423c3a4d5d58 https://www.encodeproject.org/files/ENCFF109QZW/@@download/ENCFF109QZW.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF586KRI bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF277CCO, ENCFF529BRM, ENCFF643CGH 3237648557 ENCODE Processing Pipeline 2041b4b35a91ac18080a08e8887b9813 https://www.encodeproject.org/files/ENCFF586KRI/@@download/ENCFF586KRI.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF662KUU bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF349DXW, ENCFF643CGH, ENCFF660MJG 4098492067 ENCODE Processing Pipeline f6eb048a098852b21210333aa501f732 https://www.encodeproject.org/files/ENCFF662KUU/@@download/ENCFF662KUU.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF936MJV bigWig signal p-value ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF586KRI, ENCFF898KHD 743932844 ENCODE Processing Pipeline 8202a7a9b8a831a18a1646df9572c99b https://www.encodeproject.org/files/ENCFF936MJV/@@download/ENCFF936MJV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF473HJO bigWig signal p-value ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF662KUU, ENCFF898KHD 919338951 ENCODE Processing Pipeline 625121dc021d51503f8d3cd3617c66b2 https://www.encodeproject.org/files/ENCFF473HJO/@@download/ENCFF473HJO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF989JQZ bigWig signal p-value ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF586KRI, ENCFF662KUU, ENCFF898KHD 1126997553 ENCODE Processing Pipeline 92141a6d3c6832e0ecf1b07136626836 https://www.encodeproject.org/files/ENCFF989JQZ/@@download/ENCFF989JQZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF923BHW bigWig fold change over control ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF586KRI, ENCFF898KHD 883918710 ENCODE Processing Pipeline 42cf8a8f0db267b0beca2fcfd5904872 https://www.encodeproject.org/files/ENCFF923BHW/@@download/ENCFF923BHW.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF563KWV bigWig fold change over control ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF662KUU, ENCFF898KHD 976426066 ENCODE Processing Pipeline da0edbe0db98fcc4fd1faf606c0c13f5 https://www.encodeproject.org/files/ENCFF563KWV/@@download/ENCFF563KWV.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF570CAT bigWig fold change over control ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF586KRI, ENCFF662KUU, ENCFF898KHD 1415072974 ENCODE Processing Pipeline 532d5d965dae82be99472cbf4f64178e https://www.encodeproject.org/files/ENCFF570CAT/@@download/ENCFF570CAT.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF235HIP bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF586KRI, ENCFF662KUU, ENCFF898KHD 6862390 ENCODE Processing Pipeline a58c3dfb906f93014f62c68595b938cc https://www.encodeproject.org/files/ENCFF235HIP/@@download/ENCFF235HIP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF041ATK bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF586KRI, ENCFF898KHD 5806562 ENCODE Processing Pipeline e2b7ca1ee767ebdb89591f59e8053eca https://www.encodeproject.org/files/ENCFF041ATK/@@download/ENCFF041ATK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF841XAB bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF662KUU, ENCFF898KHD 6016291 ENCODE Processing Pipeline 9cd3ff136e0f576a3ef7523933153408 https://www.encodeproject.org/files/ENCFF841XAB/@@download/ENCFF841XAB.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF597SRV bigBed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF041ATK 11234334 ENCODE Processing Pipeline 206c855cee4acb983248d32f1a85aff9 https://www.encodeproject.org/files/ENCFF597SRV/@@download/ENCFF597SRV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF736KJH bigBed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF841XAB 11181506 ENCODE Processing Pipeline 48d485b662610ff14db30d73f70ea36f https://www.encodeproject.org/files/ENCFF736KJH/@@download/ENCFF736KJH.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF395KZN bigBed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF235HIP 13257708 ENCODE Processing Pipeline a4450567073883eecc2007fea4f41a9c https://www.encodeproject.org/files/ENCFF395KZN/@@download/ENCFF395KZN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF803HUH bed narrowPeak conservative idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF041ATK, ENCFF235HIP, ENCFF419RSJ, ENCFF841XAB 79132 ENCODE Processing Pipeline b1d1973297dd68897052bef9c5f1efb3 https://www.encodeproject.org/files/ENCFF803HUH/@@download/ENCFF803HUH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF498POS bigBed narrowPeak conservative idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF803HUH 210798 ENCODE Processing Pipeline 355a1832d6f3121ae2111258c3f47c0c https://www.encodeproject.org/files/ENCFF498POS/@@download/ENCFF498POS.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF587PBU bed narrowPeak optimal idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF041ATK, ENCFF235HIP, ENCFF419RSJ, ENCFF841XAB 87923 ENCODE Processing Pipeline 89af7748e051ca3be492460952e50e39 https://www.encodeproject.org/files/ENCFF587PBU/@@download/ENCFF587PBU.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF438ZXV bigBed narrowPeak optimal idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF587PBU 224366 ENCODE Processing Pipeline 02ad3173d82aee2c351c72f642ee27f1 https://www.encodeproject.org/files/ENCFF438ZXV/@@download/ENCFF438ZXV.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF332DRG bed narrowPeak optimal idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF069PPO, ENCFF351JUL, ENCFF981LHO 86566 ENCODE Processing Pipeline 1e20dd325116baacb561791a59333622 https://www.encodeproject.org/files/ENCFF332DRG/@@download/ENCFF332DRG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF055DBO bigBed narrowPeak conservative idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF320ZVD 158059 ENCODE Processing Pipeline 0875c301e62a4525734dec609b6f395a https://www.encodeproject.org/files/ENCFF055DBO/@@download/ENCFF055DBO.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF320ZVD bed narrowPeak conservative idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF001TDO, ENCFF069PPO, ENCFF351JUL, ENCFF981LHO 65637 ENCODE Processing Pipeline d2a7ec45263ca5b3e3377e81acd82e71 https://www.encodeproject.org/files/ENCFF320ZVD/@@download/ENCFF320ZVD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF139WSC bigBed narrowPeak optimal idr thresholded peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1, 2 ENCFF332DRG 184456 ENCODE Processing Pipeline 3396189ef51e776a40c8a477bd0d5a93 https://www.encodeproject.org/files/ENCFF139WSC/@@download/ENCFF139WSC.bigBed hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF002AVL fastq reads ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 1 36 single-ended 889129689 Bradley Bernstein, Broad 9e909078e7a1d0e8de4f0353687c6537 SRA:SRR5833043 https://www.encodeproject.org/files/ENCFF002AVL/@@download/ENCFF002AVL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF002AVW fastq reads ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 1 37 single-ended 745251810 Bradley Bernstein, Broad b3d430524ce3d9d599503ac02c668e32 SRA:SRR5833040 https://www.encodeproject.org/files/ENCFF002AVW/@@download/ENCFF002AVW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYG/, /files/ENCFF002BCA/ released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF094ZYW fastq reads ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 1 76 single-ended 331521259 Bradley Bernstein, Broad 92a624a35066dbe5c50c645cbe8ee59f SRA:SRR5833044 https://www.encodeproject.org/files/ENCFF094ZYW/@@download/ENCFF094ZYW.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF266OUT fastq reads ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 1 76 single-ended 339551343 Bradley Bernstein, Broad 156fcf19aa02e4f1b1b521383f6bc100 SRA:SRR5833045 https://www.encodeproject.org/files/ENCFF266OUT/@@download/ENCFF266OUT.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AVJ/, /files/ENCFF002BAA/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF562LZL fastq reads ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 1 76 single-ended 516209432 Bradley Bernstein, Broad eb3bcc7c4e8c8ba65c2974f93023ac32 SRA:SRR5833041 https://www.encodeproject.org/files/ENCFF562LZL/@@download/ENCFF562LZL.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYG/, /files/ENCFF002BCA/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF690GSP fastq reads ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 1 76 single-ended 512644473 Bradley Bernstein, Broad 1548041ead9badc1797b74348801fd47 SRA:SRR5833042 https://www.encodeproject.org/files/ENCFF690GSP/@@download/ENCFF690GSP.fastq.gz Illumina HiSeq 2500 /files/ENCFF002AYG/, /files/ENCFF002BCA/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent control read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF027YQQ bam unfiltered alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AVW, ENCFF562LZL, ENCFF643CGH, ENCFF690GSP 1649587150 ENCODE Processing Pipeline 11d5a733b523c25e7a29be4181eb09ae https://www.encodeproject.org/files/ENCFF027YQQ/@@download/ENCFF027YQQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF511GNG bam unfiltered alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AVW, ENCFF562LZL, ENCFF690GSP, ENCFF807MUK 1642731109 ENCODE Processing Pipeline 5385c68a29288b7493ad46341ea04974 https://www.encodeproject.org/files/ENCFF511GNG/@@download/ENCFF511GNG.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF741GDS bam unfiltered alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AVL, ENCFF094ZYW, ENCFF266OUT, ENCFF807MUK 1543719756 ENCODE Processing Pipeline 66e1c2a2c80b443c53fe490ff66cf659 https://www.encodeproject.org/files/ENCFF741GDS/@@download/ENCFF741GDS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF654OKM bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AVL, ENCFF094ZYW, ENCFF266OUT, ENCFF807MUK 936543604 ENCODE Processing Pipeline 48465a36e6ba76f70e5a84945af1cba9 https://www.encodeproject.org/files/ENCFF654OKM/@@download/ENCFF654OKM.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF342MWY bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AVW, ENCFF562LZL, ENCFF690GSP, ENCFF807MUK 1148816369 ENCODE Processing Pipeline 18e2023e55163bb8a590aaf234351c11 https://www.encodeproject.org/files/ENCFF342MWY/@@download/ENCFF342MWY.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF357BBC bam unfiltered alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AVL, ENCFF094ZYW, ENCFF266OUT, ENCFF643CGH 1548688877 ENCODE Processing Pipeline 5995ed9377b17df33bbd1f862a617a01 https://www.encodeproject.org/files/ENCFF357BBC/@@download/ENCFF357BBC.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF931HUP bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AVL, ENCFF094ZYW, ENCFF266OUT, ENCFF643CGH 935975519 ENCODE Processing Pipeline 5e2653498d8a7e3e15cf9071911e8e51 https://www.encodeproject.org/files/ENCFF931HUP/@@download/ENCFF931HUP.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF120JNQ bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AVW, ENCFF562LZL, ENCFF643CGH, ENCFF690GSP 1148309960 ENCODE Processing Pipeline 078665f4cae3be941efac3f4b1339ab8 https://www.encodeproject.org/files/ENCFF120JNQ/@@download/ENCFF120JNQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF461XHI bigWig fold change over control ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF654OKM 1025483439 ENCODE Processing Pipeline 34ce5f686220c66f8c43272583f7b4a1 https://www.encodeproject.org/files/ENCFF461XHI/@@download/ENCFF461XHI.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF466KIK bigWig signal p-value ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP, ENCFF654OKM 1536665000 ENCODE Processing Pipeline 3fc715954abb70e3608fe889966f45d2 https://www.encodeproject.org/files/ENCFF466KIK/@@download/ENCFF466KIK.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF156SZS bigBed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF607FHS 13864395 ENCODE Processing Pipeline 724f169ad31b705ece60aa62f2fcaefa https://www.encodeproject.org/files/ENCFF156SZS/@@download/ENCFF156SZS.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF423DSR bigBed narrowPeak optimal idr thresholded peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF862VFJ 3168319 ENCODE Processing Pipeline 5a8f0b8f8b3db489b4cbcf40dea71006 https://www.encodeproject.org/files/ENCFF423DSR/@@download/ENCFF423DSR.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF133WKO bigBed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF536OEM 12935402 ENCODE Processing Pipeline cf1de6a671ade2fb65a18f34ce6ef33f https://www.encodeproject.org/files/ENCFF133WKO/@@download/ENCFF133WKO.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF948FJE bigBed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF344EMX 13487091 ENCODE Processing Pipeline 136844821a20acf535aa150f816fd203 https://www.encodeproject.org/files/ENCFF948FJE/@@download/ENCFF948FJE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF307CBG bigWig signal p-value ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP 1200809416 ENCODE Processing Pipeline 0447ab4cbca7dc5a60debc2ae536d7cb https://www.encodeproject.org/files/ENCFF307CBG/@@download/ENCFF307CBG.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF356YGH bigWig fold change over control ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP 1113873715 ENCODE Processing Pipeline c80b0b420a0f1c3e1896d52bc7adc7bb https://www.encodeproject.org/files/ENCFF356YGH/@@download/ENCFF356YGH.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF978RSM bigWig signal p-value ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF654OKM 1182889943 ENCODE Processing Pipeline 5738684840adba899754d6aac1f5f827 https://www.encodeproject.org/files/ENCFF978RSM/@@download/ENCFF978RSM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF336XOJ bigWig fold change over control ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP, ENCFF654OKM 1514530433 ENCODE Processing Pipeline 799a5a43f57f5c919490c7c768911df5 https://www.encodeproject.org/files/ENCFF336XOJ/@@download/ENCFF336XOJ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF536OEM bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF654OKM 6456581 ENCODE Processing Pipeline 67ca50ace187082751a8ac217c988297 https://www.encodeproject.org/files/ENCFF536OEM/@@download/ENCFF536OEM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF607FHS bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP 6332816 ENCODE Processing Pipeline eb8dba5e0c5c90d342f6ffcbf32ae0c0 https://www.encodeproject.org/files/ENCFF607FHS/@@download/ENCFF607FHS.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF344EMX bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP, ENCFF654OKM 6877157 ENCODE Processing Pipeline 610201e7eec5da32b9cd391a42b960ee https://www.encodeproject.org/files/ENCFF344EMX/@@download/ENCFF344EMX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF862VFJ bed narrowPeak optimal idr thresholded peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF001TDO, ENCFF344EMX, ENCFF536OEM, ENCFF607FHS 1500244 ENCODE Processing Pipeline 3ea35f80ad188673c48542f634d09d79 https://www.encodeproject.org/files/ENCFF862VFJ/@@download/ENCFF862VFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF744UAL bigWig fold change over control ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF931HUP 1025199458 ENCODE Processing Pipeline c3698e2550dc339edb1eca7d3dea123c https://www.encodeproject.org/files/ENCFF744UAL/@@download/ENCFF744UAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF821IRB bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA, ENCFF931HUP 6804360 ENCODE Processing Pipeline 82dca660a97f47c704bda5eb8bd90db3 https://www.encodeproject.org/files/ENCFF821IRB/@@download/ENCFF821IRB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF580SED bigBed narrowPeak optimal idr thresholded peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF186NOM 3137353 ENCODE Processing Pipeline d97fc92c1f1fa6bfcaeb14056e4d3a01 https://www.encodeproject.org/files/ENCFF580SED/@@download/ENCFF580SED.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF758WNS bigWig signal p-value ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF931HUP 1111556402 ENCODE Processing Pipeline 59f474163e81811ea9f40473d0322042 https://www.encodeproject.org/files/ENCFF758WNS/@@download/ENCFF758WNS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF430LIF bigBed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF418CJB 12941247 ENCODE Processing Pipeline f80d6fe66512305dfd2c9f6b700b42aa https://www.encodeproject.org/files/ENCFF430LIF/@@download/ENCFF430LIF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF019UDG bigWig signal p-value ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA, ENCFF931HUP 1500725973 ENCODE Processing Pipeline 766cdf378457748434d8d0214821f46a https://www.encodeproject.org/files/ENCFF019UDG/@@download/ENCFF019UDG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF455RLT bigWig fold change over control ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA, ENCFF931HUP 1506244323 ENCODE Processing Pipeline bf57e702835ccdb6b2e1df5f77925e8b https://www.encodeproject.org/files/ENCFF455RLT/@@download/ENCFF455RLT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF418CJB bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF046QZN, ENCFF537BWA, ENCFF931HUP 6458509 ENCODE Processing Pipeline 01d284d301fa117c0ccbfb9b3e73a91d https://www.encodeproject.org/files/ENCFF418CJB/@@download/ENCFF418CJB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF676LTK bigBed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF499TID 13736453 ENCODE Processing Pipeline 91d15c5946f0195e483f5e3836c16a0f https://www.encodeproject.org/files/ENCFF676LTK/@@download/ENCFF676LTK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF032MKF bigBed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF821IRB 13391087 ENCODE Processing Pipeline 5a27f9b80b5656d86c9ea225a1db08a2 https://www.encodeproject.org/files/ENCFF032MKF/@@download/ENCFF032MKF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF312KAQ bigWig signal p-value ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA 1340814638 ENCODE Processing Pipeline c8fd5d323fe209d37fc7b312492f5bbb https://www.encodeproject.org/files/ENCFF312KAQ/@@download/ENCFF312KAQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF499TID bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA 6228126 ENCODE Processing Pipeline 7db81b8766af6935d1143bd597fff90b https://www.encodeproject.org/files/ENCFF499TID/@@download/ENCFF499TID.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF611PFA bigWig fold change over control ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF046QZN, ENCFF120JNQ, ENCFF537BWA 1105296521 ENCODE Processing Pipeline 2c3856cbcdcc00f7432c1a2e30305ea2 https://www.encodeproject.org/files/ENCFF611PFA/@@download/ENCFF611PFA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF186NOM bed narrowPeak optimal idr thresholded peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1, 2 ENCFF418CJB, ENCFF419RSJ, ENCFF499TID, ENCFF821IRB 1485614 ENCODE Processing Pipeline 522a8b46a6dbd17244d52faf5f2c27b7 https://www.encodeproject.org/files/ENCFF186NOM/@@download/ENCFF186NOM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF000XBP bigBed narrowPeak peaks ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHZ 502028 Sherman Weissman, Yale e64469350e71adfaa1ce6f6fa4f7fb24 https://www.encodeproject.org/files/ENCFF000XBP/@@download/ENCFF000XBP.bigBed hg19 released inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000XBQ bigWig signal ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 301319990 Sherman Weissman, Yale b803f6acdd0b946c88bdfd1006af4530 https://www.encodeproject.org/files/ENCFF000XBQ/@@download/ENCFF000XBQ.bigWig hg19 released inconsistent platforms duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XBR bam alignments ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XCG 246697620 Sherman Weissman, Yale 7460ca495f4a92d1b0ad7bfd16b19502 https://www.encodeproject.org/files/ENCFF000XBR/@@download/ENCFF000XBR.bam hg19 released inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000XBS bam alignments ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XCF 253326242 Sherman Weissman, Yale d71cb1c0104aeb6524b278b0e0258d51 https://www.encodeproject.org/files/ENCFF000XBS/@@download/ENCFF000XBS.bam hg19 released inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000XCF fastq reads ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 195125126 Sherman Weissman, Yale e8428c0edeb02438269020e97178283e https://www.encodeproject.org/files/ENCFF000XCF/@@download/ENCFF000XCF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000XCG fastq reads ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 184452553 Sherman Weissman, Yale be6274961f346b4339bad80a482f0b54 https://www.encodeproject.org/files/ENCFF000XCG/@@download/ENCFF000XCG.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF001VHZ bed narrowPeak peaks ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 188743 Sherman Weissman, Yale 4a5e172a866981471399158fd59c4876 https://www.encodeproject.org/files/ENCFF001VHZ/@@download/ENCFF001VHZ.bed.gz hg19 released inconsistent platforms duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CSB bed narrowPeak optimal idr thresholded peaks ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 233892 ENCODE Consortium Analysis Working Group d1cdae9ffcf36c5c0bd31a65c7f33126 https://www.encodeproject.org/files/ENCFF002CSB/@@download/ENCFF002CSB.bed.gz hg19 released inconsistent platforms duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF026YLD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSB 539742 ENCODE Consortium a33ff5c5cbed288bf6f53272872c5b0f https://www.encodeproject.org/files/ENCFF026YLD/@@download/ENCFF026YLD.bigBed hg19 released inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000WQQ bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 1 484057944 Michael Snyder, Stanford 580e1020d289919a85da95ea6664b443 https://www.encodeproject.org/files/ENCFF000WQQ/@@download/ENCFF000WQQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WQR bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VGO 551805 Michael Snyder, Stanford 851316cdcafb5083de40a399f6e834d0 https://www.encodeproject.org/files/ENCFF000WQR/@@download/ENCFF000WQR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WQS bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 1 587867295 Michael Snyder, Stanford ca6bc46be7cc3507694bf4b7618fb28f https://www.encodeproject.org/files/ENCFF000WQS/@@download/ENCFF000WQS.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WQT fastq reads ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1327935540 Michael Snyder, Stanford 7e47b9b464a4683d77f681ae8a5be697 https://www.encodeproject.org/files/ENCFF000WQT/@@download/ENCFF000WQT.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WQV fastq reads ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 945807425 Michael Snyder, Stanford 8148ea517829880a92fcc1749922c3e0 https://www.encodeproject.org/files/ENCFF000WQV/@@download/ENCFF000WQV.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WQX bigWig signal ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 406318433 Michael Snyder, Stanford e25fb9a30d6644ed840a848c3a39b726 https://www.encodeproject.org/files/ENCFF000WQX/@@download/ENCFF000WQX.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VGO bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 237238 Michael Snyder, Stanford dd0e5b6256dc61f593df06cf61c112e0 https://www.encodeproject.org/files/ENCFF001VGO/@@download/ENCFF001VGO.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CQQ bed narrowPeak optimal idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 53948 ENCODE Consortium Analysis Working Group 51011e40936b048440f5f97f0de44638 https://www.encodeproject.org/files/ENCFF002CQQ/@@download/ENCFF002CQQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF618CHU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CQQ 217936 ENCODE Consortium 992b4d2456aaea13a7a5c8aadbfc10dd https://www.encodeproject.org/files/ENCFF618CHU/@@download/ENCFF618CHU.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF106HFQ bam unfiltered alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQV, ENCFF643CGH 1087018159 ENCODE Processing Pipeline 24565049a9075d4993a6c3a314b55d58 https://www.encodeproject.org/files/ENCFF106HFQ/@@download/ENCFF106HFQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF398CZS bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQV, ENCFF643CGH 734269406 ENCODE Processing Pipeline 3a86ddac0b3c747960095fedf197f65d https://www.encodeproject.org/files/ENCFF398CZS/@@download/ENCFF398CZS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF850FEF bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQT, ENCFF643CGH 1058730185 ENCODE Processing Pipeline c6592fcfceeb47abd3ccba095d51ee86 https://www.encodeproject.org/files/ENCFF850FEF/@@download/ENCFF850FEF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF882HGZ bam unfiltered alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQT, ENCFF643CGH 1503953703 ENCODE Processing Pipeline 4c35bcd85661ad12e380f31d12124f48 https://www.encodeproject.org/files/ENCFF882HGZ/@@download/ENCFF882HGZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF165TQU bam unfiltered alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQV, ENCFF807MUK 1082029505 ENCODE Processing Pipeline daa823beba7c0a2c0d8f5465d24ba0af https://www.encodeproject.org/files/ENCFF165TQU/@@download/ENCFF165TQU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF340SPV bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQV, ENCFF807MUK 734668982 ENCODE Processing Pipeline 1c516d4d08bbc8181eadc52027e29b27 https://www.encodeproject.org/files/ENCFF340SPV/@@download/ENCFF340SPV.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF979TXI bam unfiltered alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQT, ENCFF807MUK 1497262267 ENCODE Processing Pipeline 971f8e275b8c41662762464bc9663760 https://www.encodeproject.org/files/ENCFF979TXI/@@download/ENCFF979TXI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932MOL bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQT, ENCFF807MUK 1059136161 ENCODE Processing Pipeline 7453a71446568e23c985b9f1ba6d5954 https://www.encodeproject.org/files/ENCFF932MOL/@@download/ENCFF932MOL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF971FXL bigWig fold change over control ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF398CZS, ENCFF513EWK 430873896 ENCODE Processing Pipeline 985e36e14874e3f6cd744975729bbca1 https://www.encodeproject.org/files/ENCFF971FXL/@@download/ENCFF971FXL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF911CCI bigWig signal p-value ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF850FEF 583160486 ENCODE Processing Pipeline d5594b27598c8ee2f71e70fd976df498 https://www.encodeproject.org/files/ENCFF911CCI/@@download/ENCFF911CCI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998LWF bigWig signal p-value ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF398CZS, ENCFF513EWK, ENCFF850FEF 768343382 ENCODE Processing Pipeline 8a9cc77897c6befc0c9f9194a5f262a8 https://www.encodeproject.org/files/ENCFF998LWF/@@download/ENCFF998LWF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620MRE bigWig fold change over control ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF398CZS, ENCFF513EWK, ENCFF850FEF 800312533 ENCODE Processing Pipeline 3ff621ac1c94c9ffb0bb08083ba7d162 https://www.encodeproject.org/files/ENCFF620MRE/@@download/ENCFF620MRE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF526USG bigWig signal p-value ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF398CZS, ENCFF513EWK 637283199 ENCODE Processing Pipeline 20606e12c4307efdd661e3d4e0ae25be https://www.encodeproject.org/files/ENCFF526USG/@@download/ENCFF526USG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF002NDR bigWig fold change over control ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF850FEF 528247386 ENCODE Processing Pipeline 4ee52e9420ffa47693374df18b7b9ccb https://www.encodeproject.org/files/ENCFF002NDR/@@download/ENCFF002NDR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF635UGS bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF338YFB 3185052 ENCODE Processing Pipeline ebd79094cf333d4707e2bc8d8803137a https://www.encodeproject.org/files/ENCFF635UGS/@@download/ENCFF635UGS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF024UWC bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF398CZS, ENCFF513EWK 4309506 ENCODE Processing Pipeline ddeaf2384359904c3c06be60abc1d54d https://www.encodeproject.org/files/ENCFF024UWC/@@download/ENCFF024UWC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF311LIE bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF024UWC 10835518 ENCODE Processing Pipeline cfd9f2a4617a89d1bdb13fa3b438607f https://www.encodeproject.org/files/ENCFF311LIE/@@download/ENCFF311LIE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF076ZNS bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF850FEF 4292513 ENCODE Processing Pipeline c83ada297f297b624b69347747bb9733 https://www.encodeproject.org/files/ENCFF076ZNS/@@download/ENCFF076ZNS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338YFB bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF398CZS, ENCFF513EWK, ENCFF850FEF 1453947 ENCODE Processing Pipeline 77d8711297cb84a39eda0553b83a8107 https://www.encodeproject.org/files/ENCFF338YFB/@@download/ENCFF338YFB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF613IYB bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF076ZNS 11066902 ENCODE Processing Pipeline 0d1e612f7a5f3f5d5ee51b109708eab1 https://www.encodeproject.org/files/ENCFF613IYB/@@download/ENCFF613IYB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962YTC bed narrowPeak optimal idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF024UWC, ENCFF076ZNS, ENCFF338YFB, ENCFF419RSJ 35829 ENCODE Processing Pipeline e0e2665489187f6c34c4bde2b4a4b997 https://www.encodeproject.org/files/ENCFF962YTC/@@download/ENCFF962YTC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF002MRQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF962YTC 100491 ENCODE Processing Pipeline a212eeedacca87e44bd59417a09b5124 https://www.encodeproject.org/files/ENCFF002MRQ/@@download/ENCFF002MRQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF588CGN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF183BLB 91889 ENCODE Processing Pipeline b002b4827a724c82a9f67829b05d74df https://www.encodeproject.org/files/ENCFF588CGN/@@download/ENCFF588CGN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF183BLB bed narrowPeak conservative idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF024UWC, ENCFF076ZNS, ENCFF338YFB, ENCFF419RSJ 29583 ENCODE Processing Pipeline b21fff33badf6b94c60a58ecdf15467f https://www.encodeproject.org/files/ENCFF183BLB/@@download/ENCFF183BLB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF859SFN bigWig signal p-value ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF932MOL 598932440 ENCODE Processing Pipeline cf06554185ece6b4645e017e44f8f4fa https://www.encodeproject.org/files/ENCFF859SFN/@@download/ENCFF859SFN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF349VHG bigWig signal p-value ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF340SPV, ENCFF599MVB, ENCFF932MOL 774279499 ENCODE Processing Pipeline fc738a562fcae5851dd6b1480a76f8bd https://www.encodeproject.org/files/ENCFF349VHG/@@download/ENCFF349VHG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF337EWI bigWig fold change over control ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF932MOL 521569857 ENCODE Processing Pipeline b26f01c2cc24cd1f8d2746f7faca554a https://www.encodeproject.org/files/ENCFF337EWI/@@download/ENCFF337EWI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF049RDV bigWig fold change over control ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF340SPV, ENCFF599MVB 421000139 ENCODE Processing Pipeline 060a77c013f7975d944e42ff765d954c https://www.encodeproject.org/files/ENCFF049RDV/@@download/ENCFF049RDV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF607PGS bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF340SPV, ENCFF599MVB, ENCFF932MOL 1413835 ENCODE Processing Pipeline 65d7fb0f5ed75a21b93ca62e1d30f276 https://www.encodeproject.org/files/ENCFF607PGS/@@download/ENCFF607PGS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296PAW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF338LKA 90498 ENCODE Processing Pipeline 3849e671f30ceef7700262001983b0be https://www.encodeproject.org/files/ENCFF296PAW/@@download/ENCFF296PAW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF284OQF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF658OOS 101033 ENCODE Processing Pipeline 74d84dbe175a1ba6da2a08c523b4a54d https://www.encodeproject.org/files/ENCFF284OQF/@@download/ENCFF284OQF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604TKB bigWig signal p-value ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF340SPV, ENCFF599MVB 605834347 ENCODE Processing Pipeline 56c4125ac3b01811a2454312cae4354c https://www.encodeproject.org/files/ENCFF604TKB/@@download/ENCFF604TKB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF312BLK bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF340SPV, ENCFF599MVB 4312437 ENCODE Processing Pipeline 4d688f33f41e2069d1e3663e4acc70ed https://www.encodeproject.org/files/ENCFF312BLK/@@download/ENCFF312BLK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338LKA bed narrowPeak conservative idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF312BLK, ENCFF354QYP, ENCFF607PGS 28554 ENCODE Processing Pipeline 200bc8fd4e641e6aa3bc401f2ec89473 https://www.encodeproject.org/files/ENCFF338LKA/@@download/ENCFF338LKA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF669OFF bigWig fold change over control ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF340SPV, ENCFF599MVB, ENCFF932MOL 807561192 ENCODE Processing Pipeline 29e0cfa46f574b58bfe1d5718f57c561 https://www.encodeproject.org/files/ENCFF669OFF/@@download/ENCFF669OFF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354QYP bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF932MOL 4293581 ENCODE Processing Pipeline a70946a63d3206418cf9a01c98969c2b https://www.encodeproject.org/files/ENCFF354QYP/@@download/ENCFF354QYP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF066YTY bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF354QYP 11060908 ENCODE Processing Pipeline de1d06db92cfdae20e507290a374441d https://www.encodeproject.org/files/ENCFF066YTY/@@download/ENCFF066YTY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF293KHA bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF607PGS 3081266 ENCODE Processing Pipeline 4b742c42632a7ede546f46cf1eec0e46 https://www.encodeproject.org/files/ENCFF293KHA/@@download/ENCFF293KHA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF433NWK bigBed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF312BLK 10832324 ENCODE Processing Pipeline 327fd221b84ca063f233efaa322f092f https://www.encodeproject.org/files/ENCFF433NWK/@@download/ENCFF433NWK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF658OOS bed narrowPeak optimal idr thresholded peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF312BLK, ENCFF354QYP, ENCFF607PGS 36525 ENCODE Processing Pipeline 84b058d22a0501bc42a348af3a655419 https://www.encodeproject.org/files/ENCFF658OOS/@@download/ENCFF658OOS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF829IFG bam unfiltered alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF807MUK, ENCFF871SUI, ENCFF921VOK 5134062302 ENCODE Processing Pipeline 70d15d06ed2d1b746a478fc8a257ad97 https://www.encodeproject.org/files/ENCFF829IFG/@@download/ENCFF829IFG.bam hg19 released ENCFF334HIN bam unfiltered alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF292YNE, ENCFF755HHM, ENCFF807MUK 5984170760 ENCODE Processing Pipeline c4b4ccd4dd318ccac7bab899bcc9c13e https://www.encodeproject.org/files/ENCFF334HIN/@@download/ENCFF334HIN.bam hg19 released ENCFF755HHM fastq reads ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF292YNE 2883563015 Michael Snyder, Stanford 5c94c97283c36b75d150263500a38a4b SRA:SRR5111140 https://www.encodeproject.org/files/ENCFF755HHM/@@download/ENCFF755HHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF292YNE fastq reads ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF755HHM 2922149424 Michael Snyder, Stanford 0c9c1a65bb2e467d9b76c87fd3aac252 SRA:SRR5111140 https://www.encodeproject.org/files/ENCFF292YNE/@@download/ENCFF292YNE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF871SUI fastq reads ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF921VOK 2553316350 Michael Snyder, Stanford a656484cb7843dff489b1aad9142eb1a SRA:SRR5111139 https://www.encodeproject.org/files/ENCFF871SUI/@@download/ENCFF871SUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF921VOK fastq reads ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF871SUI 2471054018 Michael Snyder, Stanford 3660f89b9863ec81a7e584a7510a43bf SRA:SRR5111139 https://www.encodeproject.org/files/ENCFF921VOK/@@download/ENCFF921VOK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF133FDG bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF807MUK, ENCFF871SUI, ENCFF921VOK 4310439932 ENCODE Processing Pipeline cbbad4454ca2f3ac94e5f8c7b02c9dbd https://www.encodeproject.org/files/ENCFF133FDG/@@download/ENCFF133FDG.bam hg19 released ENCFF394VWK bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF292YNE, ENCFF755HHM, ENCFF807MUK 4932420553 ENCODE Processing Pipeline 1084c4c34861c017d624754d324b4348 https://www.encodeproject.org/files/ENCFF394VWK/@@download/ENCFF394VWK.bam hg19 released ENCFF182LJE bigWig signal p-value ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF133FDG 1098808646 ENCODE Processing Pipeline e437e9b0e3123ea66c537b632da2bfa4 https://www.encodeproject.org/files/ENCFF182LJE/@@download/ENCFF182LJE.bigWig hg19 released ENCFF964WPN bigWig fold change over control ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF133FDG 1119830481 ENCODE Processing Pipeline 688ddae3d7674814a9fc0f7c30017508 https://www.encodeproject.org/files/ENCFF964WPN/@@download/ENCFF964WPN.bigWig hg19 released ENCFF653BMD bam unfiltered alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF871SUI, ENCFF921VOK 5135909987 ENCODE Processing Pipeline b4f41ba7d5b130f13030a7349f0501a6 https://www.encodeproject.org/files/ENCFF653BMD/@@download/ENCFF653BMD.bam GRCh38 released ENCFF672RSD bam unfiltered alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF292YNE, ENCFF643CGH, ENCFF755HHM 5987068071 ENCODE Processing Pipeline 88bcee8d311b3148815210e80c79b3a5 https://www.encodeproject.org/files/ENCFF672RSD/@@download/ENCFF672RSD.bam GRCh38 released ENCFF494OJC bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF871SUI, ENCFF921VOK 4311976089 ENCODE Processing Pipeline 2d65c7556cc5db129801d80506fdd246 https://www.encodeproject.org/files/ENCFF494OJC/@@download/ENCFF494OJC.bam GRCh38 released ENCFF636IGK bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF292YNE, ENCFF643CGH, ENCFF755HHM 4933959486 ENCODE Processing Pipeline 0882c696da4df92e3868e2b859555aea https://www.encodeproject.org/files/ENCFF636IGK/@@download/ENCFF636IGK.bam GRCh38 released ENCFF446PWR bigWig signal p-value ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF636IGK, ENCFF910IKB 1098481069 ENCODE Processing Pipeline 954df50ebe9291f8fef37b38cc6b9584 https://www.encodeproject.org/files/ENCFF446PWR/@@download/ENCFF446PWR.bigWig GRCh38 released ENCFF306BOX bigWig signal p-value ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF494OJC 1178588340 ENCODE Processing Pipeline 3f1b33b13a2519b49ed5c4399785bbfa https://www.encodeproject.org/files/ENCFF306BOX/@@download/ENCFF306BOX.bigWig GRCh38 released ENCFF825XZN bigWig signal p-value ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF494OJC, ENCFF636IGK, ENCFF910IKB 1756130624 ENCODE Processing Pipeline 2d8872635fa18ecc3db5388920d473f5 https://www.encodeproject.org/files/ENCFF825XZN/@@download/ENCFF825XZN.bigWig GRCh38 released ENCFF426SDA bigWig fold change over control ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF636IGK, ENCFF910IKB 1257541512 ENCODE Processing Pipeline 074f0dd001c47fa6dd4b09ec3f88d761 https://www.encodeproject.org/files/ENCFF426SDA/@@download/ENCFF426SDA.bigWig GRCh38 released ENCFF462JTB bigWig fold change over control ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF494OJC 1116613311 ENCODE Processing Pipeline ed3b23e9f5034fdedc94897c42d6ac32 https://www.encodeproject.org/files/ENCFF462JTB/@@download/ENCFF462JTB.bigWig GRCh38 released ENCFF229VFD bigWig fold change over control ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF494OJC, ENCFF636IGK, ENCFF910IKB 2098818318 ENCODE Processing Pipeline a280ba174f04e006e44689607a6959ce https://www.encodeproject.org/files/ENCFF229VFD/@@download/ENCFF229VFD.bigWig GRCh38 released ENCFF869FII bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF494OJC 6941106 ENCODE Processing Pipeline 361afd2fa5e03ad6915e779742d5bfb4 https://www.encodeproject.org/files/ENCFF869FII/@@download/ENCFF869FII.bed.gz GRCh38 released ENCFF726HXU bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF494OJC, ENCFF636IGK, ENCFF910IKB 7031917 ENCODE Processing Pipeline 934fef71495b6b0afc0c97a4ece6b7f5 https://www.encodeproject.org/files/ENCFF726HXU/@@download/ENCFF726HXU.bed.gz GRCh38 released ENCFF700WGW bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF636IGK, ENCFF910IKB 7007895 ENCODE Processing Pipeline 7c0956da2de099e0a3f9eccd1c04f481 https://www.encodeproject.org/files/ENCFF700WGW/@@download/ENCFF700WGW.bed.gz GRCh38 released ENCFF722ZVO bigBed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF700WGW 13288745 ENCODE Processing Pipeline 998be8d0e4970b30ce26deeb335dc079 https://www.encodeproject.org/files/ENCFF722ZVO/@@download/ENCFF722ZVO.bigBed GRCh38 released ENCFF127FIU bigBed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF869FII 13243610 ENCODE Processing Pipeline dff5de0f86b3d9d7728112f7e90536f1 https://www.encodeproject.org/files/ENCFF127FIU/@@download/ENCFF127FIU.bigBed GRCh38 released ENCFF199VOE bigBed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF726HXU 13135378 ENCODE Processing Pipeline 4eecaaf8016a64b5706f8086d86cdeb6 https://www.encodeproject.org/files/ENCFF199VOE/@@download/ENCFF199VOE.bigBed GRCh38 released ENCFF804ARW bed narrowPeak conservative idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF700WGW, ENCFF726HXU, ENCFF869FII 721962 ENCODE Processing Pipeline 2ee5336f432bfb83f545595ff44fd506 https://www.encodeproject.org/files/ENCFF804ARW/@@download/ENCFF804ARW.bed.gz GRCh38 released ENCFF336AXR bigBed narrowPeak conservative idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF804ARW 1441574 ENCODE Processing Pipeline 95b7fb131cf27ceefc6abf2963837fb5 https://www.encodeproject.org/files/ENCFF336AXR/@@download/ENCFF336AXR.bigBed GRCh38 released ENCFF062VBB bed narrowPeak optimal idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF700WGW, ENCFF726HXU, ENCFF869FII 887713 ENCODE Processing Pipeline bf16b0269116a4fa4b389df05237843a https://www.encodeproject.org/files/ENCFF062VBB/@@download/ENCFF062VBB.bed.gz GRCh38 released ENCFF403NDS bigBed narrowPeak optimal idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF062VBB 1687664 ENCODE Processing Pipeline 114bac80a46a137313d2b5bcb833a8db https://www.encodeproject.org/files/ENCFF403NDS/@@download/ENCFF403NDS.bigBed GRCh38 released ENCFF899JZM bigWig signal p-value ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF394VWK, ENCFF581ZJL 1302115688 ENCODE Processing Pipeline d78e3583eb873a240da8fb4e2a81b8f2 https://www.encodeproject.org/files/ENCFF899JZM/@@download/ENCFF899JZM.bigWig hg19 released ENCFF258LRW bigWig fold change over control ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF133FDG, ENCFF394VWK, ENCFF581ZJL 2097135517 ENCODE Processing Pipeline a3a1b125bfb9c0246119c1e60d9f3f7a https://www.encodeproject.org/files/ENCFF258LRW/@@download/ENCFF258LRW.bigWig hg19 released ENCFF572VXK bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF394VWK, ENCFF581ZJL 7033899 ENCODE Processing Pipeline c0d6060bab366f6158b69de0f02afd5e https://www.encodeproject.org/files/ENCFF572VXK/@@download/ENCFF572VXK.bed.gz hg19 released ENCFF990JMV bigBed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF572VXK 13314575 ENCODE Processing Pipeline 17c175b376dd33c716759f6f00c7b1cd https://www.encodeproject.org/files/ENCFF990JMV/@@download/ENCFF990JMV.bigBed hg19 released ENCFF172NFT bigWig fold change over control ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF394VWK, ENCFF581ZJL 1254715253 ENCODE Processing Pipeline 834fad0ecd9758471e39296c88d9ca94 https://www.encodeproject.org/files/ENCFF172NFT/@@download/ENCFF172NFT.bigWig hg19 released ENCFF335XZE bigWig signal p-value ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF133FDG, ENCFF394VWK, ENCFF581ZJL 1850683098 ENCODE Processing Pipeline 280ac3dcccceb538ef677a8f96290741 https://www.encodeproject.org/files/ENCFF335XZE/@@download/ENCFF335XZE.bigWig hg19 released ENCFF964TUO bigBed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF279KYF 13310723 ENCODE Processing Pipeline 4e9a8d5f797e5183ee1f70be25ccf37b https://www.encodeproject.org/files/ENCFF964TUO/@@download/ENCFF964TUO.bigBed hg19 released ENCFF279KYF bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF133FDG 7001273 ENCODE Processing Pipeline cd2c87ab7d899cbebf90812117c66479 https://www.encodeproject.org/files/ENCFF279KYF/@@download/ENCFF279KYF.bed.gz hg19 released ENCFF008HLI bigBed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF967UHQ 13104210 ENCODE Processing Pipeline c16e78fb5cc22f10136644b3fb02ed14 https://www.encodeproject.org/files/ENCFF008HLI/@@download/ENCFF008HLI.bigBed hg19 released ENCFF447PKF bigBed narrowPeak optimal idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF544XKC 1683333 ENCODE Processing Pipeline aa3d7f691518c5bcff56fae66cb60130 https://www.encodeproject.org/files/ENCFF447PKF/@@download/ENCFF447PKF.bigBed hg19 released ENCFF853VOT bed narrowPeak conservative idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF279KYF, ENCFF572VXK, ENCFF967UHQ 716202 ENCODE Processing Pipeline 97d24254d0413d7c4008e40697153a51 https://www.encodeproject.org/files/ENCFF853VOT/@@download/ENCFF853VOT.bed.gz hg19 released ENCFF401RVR bigBed narrowPeak conservative idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF853VOT 1433666 ENCODE Processing Pipeline 2a271a57d5d2a09423347705c499feeb https://www.encodeproject.org/files/ENCFF401RVR/@@download/ENCFF401RVR.bigBed hg19 released ENCFF544XKC bed narrowPeak optimal idr thresholded peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF279KYF, ENCFF572VXK, ENCFF967UHQ 884225 ENCODE Processing Pipeline 1be1447808c5db1b66e6c0b3f3cf0782 https://www.encodeproject.org/files/ENCFF544XKC/@@download/ENCFF544XKC.bed.gz hg19 released ENCFF967UHQ bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF133FDG, ENCFF394VWK, ENCFF581ZJL 6994917 ENCODE Processing Pipeline 303f660256a14fa67dff0a4001f9a0e7 https://www.encodeproject.org/files/ENCFF967UHQ/@@download/ENCFF967UHQ.bed.gz hg19 released ENCFF000SBL bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SBV 1156693328 Vishwanath Iyer, UTA 208a3ff0a4619915aaebf0b998ae8025 https://www.encodeproject.org/files/ENCFF000SBL/@@download/ENCFF000SBL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000SBM bigWig base overlap signal ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1217135358 Vishwanath Iyer, UTA 6547f2f1c1c271507eac6019668f75b2 https://www.encodeproject.org/files/ENCFF000SBM/@@download/ENCFF000SBM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000SBN bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SBY 1160510961 Vishwanath Iyer, UTA 5403f8985ceabd75ddd990ed69a290a7 https://www.encodeproject.org/files/ENCFF000SBN/@@download/ENCFF000SBN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000SBQ bigBed narrowPeak peaks ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTV 2997418 Vishwanath Iyer, UTA 41c1cf16472717738b2cc2ed7302dbb9 https://www.encodeproject.org/files/ENCFF000SBQ/@@download/ENCFF000SBQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000SBR bigWig signal ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2631836553 Vishwanath Iyer, UTA f9c2f559ebf50a142f412bc35d791f02 https://www.encodeproject.org/files/ENCFF000SBR/@@download/ENCFF000SBR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000SBV fastq reads ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1231072755 Vishwanath Iyer, UTA b71f74e123f3ce3dfacdfc60a7be3305 https://www.encodeproject.org/files/ENCFF000SBV/@@download/ENCFF000SBV.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000SBY fastq reads ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1213474631 Vishwanath Iyer, UTA 0641919dfd1f8706aa42b3275b49dfa0 https://www.encodeproject.org/files/ENCFF000SBY/@@download/ENCFF000SBY.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UTV bed narrowPeak peaks ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 1656006 Vishwanath Iyer, UTA 6c970fe6171530858254a42b1d2ffae6 https://www.encodeproject.org/files/ENCFF001UTV/@@download/ENCFF001UTV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002DBP bed narrowPeak optimal idr thresholded peaks ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 455601 ENCODE Consortium Analysis Working Group c8bf0a0ef1a68236fb17c6dcfdcc9578 https://www.encodeproject.org/files/ENCFF002DBP/@@download/ENCFF002DBP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF854QDN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBP 1306110 ENCODE Consortium 12153d87eb0a1e57d4654c1177264c0f https://www.encodeproject.org/files/ENCFF854QDN/@@download/ENCFF854QDN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF340QHF bam unfiltered alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBV, ENCFF807MUK 1581836922 ENCODE Processing Pipeline 3dd03e874b10bd697d6cf16dcafcf1d3 https://www.encodeproject.org/files/ENCFF340QHF/@@download/ENCFF340QHF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF184GAG bam unfiltered alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBV, ENCFF643CGH 1583077027 ENCODE Processing Pipeline f3ac75d426dfb35b1c2ad6b48b5104f5 https://www.encodeproject.org/files/ENCFF184GAG/@@download/ENCFF184GAG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF919LIJ bam unfiltered alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBY, ENCFF807MUK 1581774585 ENCODE Processing Pipeline fdd812b9cfcc754016c5e2c8d375600d https://www.encodeproject.org/files/ENCFF919LIJ/@@download/ENCFF919LIJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF618CFY bam unfiltered alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBY, ENCFF643CGH 1583145572 ENCODE Processing Pipeline 01dc20e48e036352b2b0096f338fe9bc https://www.encodeproject.org/files/ENCFF618CFY/@@download/ENCFF618CFY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF919XJD bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBV, ENCFF807MUK 759281811 ENCODE Processing Pipeline 71d63abb46ecac08b01eae470ac82193 https://www.encodeproject.org/files/ENCFF919XJD/@@download/ENCFF919XJD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF690CUE bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBV, ENCFF643CGH 759023951 ENCODE Processing Pipeline c150abc54e04693399412b726a3d0368 https://www.encodeproject.org/files/ENCFF690CUE/@@download/ENCFF690CUE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF346BSA bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBY, ENCFF807MUK 810626837 ENCODE Processing Pipeline e1071a5c9cdfbf34a6d47e2fe7d7b7fc https://www.encodeproject.org/files/ENCFF346BSA/@@download/ENCFF346BSA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF878XRG bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBY, ENCFF643CGH 810399825 ENCODE Processing Pipeline 31806162420c38f46c2221f417fb7e68 https://www.encodeproject.org/files/ENCFF878XRG/@@download/ENCFF878XRG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001GZK bigBed broadPeak hotspots ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMR 4065982 John Stamatoyannopoulos, UW f91a4435ac50423692754dca4225f046 https://www.encodeproject.org/files/ENCFF001GZK/@@download/ENCFF001GZK.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZL bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZW 757812165 John Stamatoyannopoulos, UW e77483164c6f4e7eb3e5552de0c6db24 https://www.encodeproject.org/files/ENCFF001GZL/@@download/ENCFF001GZL.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZM bigBed broadPeak hotspots ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMS 2840130 John Stamatoyannopoulos, UW e242938962f0e1d568602cb4e041245e https://www.encodeproject.org/files/ENCFF001GZM/@@download/ENCFF001GZM.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZN bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMT 1428313 John Stamatoyannopoulos, UW d4148cffe7924a5cfb4b20b57d67a300 https://www.encodeproject.org/files/ENCFF001GZN/@@download/ENCFF001GZN.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZO bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMU 992854 John Stamatoyannopoulos, UW b046ff940f5093fd3fb991a4b0b9201f https://www.encodeproject.org/files/ENCFF001GZO/@@download/ENCFF001GZO.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZP bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZX 421423000 John Stamatoyannopoulos, UW ed7360ce07812fb67f3d3fc61468d557 https://www.encodeproject.org/files/ENCFF001GZP/@@download/ENCFF001GZP.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZQ bigWig raw signal ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZL 102721252 John Stamatoyannopoulos, UW ec4be61523121854e10c4f2acbcf7e2d https://www.encodeproject.org/files/ENCFF001GZQ/@@download/ENCFF001GZQ.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZR bigWig raw signal ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZP 88012947 John Stamatoyannopoulos, UW 5bc3e86a4c16632ecbb5557ca4eb462c https://www.encodeproject.org/files/ENCFF001GZR/@@download/ENCFF001GZR.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZW fastq reads ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1144622116 John Stamatoyannopoulos, UW 9a194c9aef52767bc35b01c0bffdd1c1 https://www.encodeproject.org/files/ENCFF001GZW/@@download/ENCFF001GZW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HAG/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001GZX fastq reads ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 581458080 John Stamatoyannopoulos, UW e0777bcd4fd00e7181773c3bf7f7e750 https://www.encodeproject.org/files/ENCFF001GZX/@@download/ENCFF001GZX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HAG/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XMR bed broadPeak hotspots ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZL 2242492 John Stamatoyannopoulos, UW d90352b55e007dee8e29ae903060c603 https://www.encodeproject.org/files/ENCFF001XMR/@@download/ENCFF001XMR.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XMS bed broadPeak hotspots ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZP 1997925 John Stamatoyannopoulos, UW 3e1cbe3c80c4357dc627b69e58a5ef59 https://www.encodeproject.org/files/ENCFF001XMS/@@download/ENCFF001XMS.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XMT bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZL 839053 John Stamatoyannopoulos, UW 8f1e2b7c669be0b177311aa1ac6fe8d3 https://www.encodeproject.org/files/ENCFF001XMT/@@download/ENCFF001XMT.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF001XMU bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZP 692623 John Stamatoyannopoulos, UW baaf1db2fcd53395f86ae116ecc0d17b https://www.encodeproject.org/files/ENCFF001XMU/@@download/ENCFF001XMU.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF002DCC bed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GZL, ENCFF001GZP 877867 ENCODE Consortium Analysis Working Group bb97df8c169ee43a57c4f9c008ecac67 https://www.encodeproject.org/files/ENCFF002DCC/@@download/ENCFF002DCC.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF137EBR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCC 1876503 ENCODE Consortium 60eec7143ab8f181e1f2463136d609bf https://www.encodeproject.org/files/ENCFF137EBR/@@download/ENCFF137EBR.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF152LFC bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GZX, ENCFF643CGH 357042466 ENCODE Processing Pipeline 6fb4443c133fde2cae0725ac497199a3 https://www.encodeproject.org/files/ENCFF152LFC/@@download/ENCFF152LFC.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF243LUI bam unfiltered alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GZX, ENCFF643CGH 636804354 ENCODE Processing Pipeline b8eb4e6d40186e3e63758c0a353af782 https://www.encodeproject.org/files/ENCFF243LUI/@@download/ENCFF243LUI.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF889KCB bam unfiltered alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GZW, ENCFF643CGH 1175228960 ENCODE Processing Pipeline a5a4a9bf199f58e508e422df5309d4eb https://www.encodeproject.org/files/ENCFF889KCB/@@download/ENCFF889KCB.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF971SCT bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GZW, ENCFF643CGH 472570860 ENCODE Processing Pipeline 9eaec2d05a81390fbcccbb348bbaaccf https://www.encodeproject.org/files/ENCFF971SCT/@@download/ENCFF971SCT.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF813TVK bam unfiltered alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GZX, ENCFF807MUK 635299335 ENCODE Processing Pipeline 8806c7e123f37f5210f340536307eb77 https://www.encodeproject.org/files/ENCFF813TVK/@@download/ENCFF813TVK.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF767ZGM bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GZX, ENCFF807MUK 357172698 ENCODE Processing Pipeline 4ed11c3f2aaf832ae034e4bbdd6b10c6 https://www.encodeproject.org/files/ENCFF767ZGM/@@download/ENCFF767ZGM.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF828GMT bam unfiltered alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GZW, ENCFF807MUK 1172818694 ENCODE Processing Pipeline 35ed057a8532071ddd4af8d600abc553 https://www.encodeproject.org/files/ENCFF828GMT/@@download/ENCFF828GMT.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF217JMI bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GZW, ENCFF807MUK 472727136 ENCODE Processing Pipeline dbe7f76a5d0690508d13e45c8f2d7521 https://www.encodeproject.org/files/ENCFF217JMI/@@download/ENCFF217JMI.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF024FWN bigWig signal p-value ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF517WZK, ENCFF971SCT 333396618 ENCODE Processing Pipeline cf0758a950701b3f278a71fa9387506f https://www.encodeproject.org/files/ENCFF024FWN/@@download/ENCFF024FWN.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF711ZPD bigWig signal p-value ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF152LFC, ENCFF517WZK 263407831 ENCODE Processing Pipeline 603f73df6fec364ea4b58dc62c6f9373 https://www.encodeproject.org/files/ENCFF711ZPD/@@download/ENCFF711ZPD.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF804AHC bigWig signal p-value ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF152LFC, ENCFF517WZK, ENCFF971SCT 331444030 ENCODE Processing Pipeline 853acbebfb5a44a350fa992596ce70b7 https://www.encodeproject.org/files/ENCFF804AHC/@@download/ENCFF804AHC.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF088IBA bigWig fold change over control ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF517WZK, ENCFF971SCT 177069107 ENCODE Processing Pipeline 510f6081865785fc0a65f298878427d6 https://www.encodeproject.org/files/ENCFF088IBA/@@download/ENCFF088IBA.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF680ZNW bigWig fold change over control ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF152LFC, ENCFF517WZK 147190635 ENCODE Processing Pipeline 9bc3231b9030ad488bed6b0a2fbe057a https://www.encodeproject.org/files/ENCFF680ZNW/@@download/ENCFF680ZNW.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF211RYT bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF152LFC, ENCFF517WZK 2712210 ENCODE Processing Pipeline 09cf0f93381c3b30c5d6efa77dbf244d https://www.encodeproject.org/files/ENCFF211RYT/@@download/ENCFF211RYT.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF354SRQ bigWig fold change over control ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF152LFC, ENCFF517WZK, ENCFF971SCT 285008697 ENCODE Processing Pipeline 55380242093667c19a71093d40126f93 https://www.encodeproject.org/files/ENCFF354SRQ/@@download/ENCFF354SRQ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF330MRW bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF932GTN 9616576 ENCODE Processing Pipeline 301f6cc2bc1d66da12e2df9ab18e6f61 https://www.encodeproject.org/files/ENCFF330MRW/@@download/ENCFF330MRW.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF774IIX bed narrowPeak conservative idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF211RYT, ENCFF341LZM, ENCFF419RSJ, ENCFF932GTN 709871 ENCODE Processing Pipeline f0764fa23bf943caf7fd900046488357 https://www.encodeproject.org/files/ENCFF774IIX/@@download/ENCFF774IIX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF932GTN bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF517WZK, ENCFF971SCT 3946717 ENCODE Processing Pipeline 68f5d84eb9713f0e951b0898aaf5e4cb https://www.encodeproject.org/files/ENCFF932GTN/@@download/ENCFF932GTN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF341LZM bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF152LFC, ENCFF517WZK, ENCFF971SCT 4525710 ENCODE Processing Pipeline c2cdf2d4c1dccbc25bc38d31a16ac408 https://www.encodeproject.org/files/ENCFF341LZM/@@download/ENCFF341LZM.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF640CEU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF774IIX 1255482 ENCODE Processing Pipeline e0ca199cd5fc95579b8a61e409308788 https://www.encodeproject.org/files/ENCFF640CEU/@@download/ENCFF640CEU.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF704JHR bed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF211RYT, ENCFF341LZM, ENCFF419RSJ, ENCFF932GTN 747632 ENCODE Processing Pipeline ebba622031840efe430e67f4b98fd2f2 https://www.encodeproject.org/files/ENCFF704JHR/@@download/ENCFF704JHR.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF937CPM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF704JHR 1305528 ENCODE Processing Pipeline e01d5d4e08f876523048a61da7965c8a https://www.encodeproject.org/files/ENCFF937CPM/@@download/ENCFF937CPM.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF819EPZ bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF211RYT 5564892 ENCODE Processing Pipeline 995d60b7f63920e56009551f9393e343 https://www.encodeproject.org/files/ENCFF819EPZ/@@download/ENCFF819EPZ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF808VWV bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF341LZM 10808690 ENCODE Processing Pipeline 13ec7ab26d7e140a1565a6a3806dc7f2 https://www.encodeproject.org/files/ENCFF808VWV/@@download/ENCFF808VWV.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF829XOU bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF217JMI, ENCFF706WFS, ENCFF767ZGM 4512426 ENCODE Processing Pipeline 430d57d6a7a81a93a96f9ca7a5f5ecf2 https://www.encodeproject.org/files/ENCFF829XOU/@@download/ENCFF829XOU.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF978TLI bigWig signal p-value ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF217JMI, ENCFF706WFS 287772164 ENCODE Processing Pipeline d8550f02832a62b66df111beb4eeb33c https://www.encodeproject.org/files/ENCFF978TLI/@@download/ENCFF978TLI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF785FIH bigWig fold change over control ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF706WFS, ENCFF767ZGM 147616346 ENCODE Processing Pipeline e5d7b86b80f2281a30c98a3682ec2e79 https://www.encodeproject.org/files/ENCFF785FIH/@@download/ENCFF785FIH.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF493VQC bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF217JMI, ENCFF706WFS 3972671 ENCODE Processing Pipeline 334898a666f4ce14ce56d36b98258185 https://www.encodeproject.org/files/ENCFF493VQC/@@download/ENCFF493VQC.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF649IRT bed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF493VQC, ENCFF777VSN, ENCFF829XOU 747549 ENCODE Processing Pipeline cff73f0abc942e1a9b0fc2c314cef00e https://www.encodeproject.org/files/ENCFF649IRT/@@download/ENCFF649IRT.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF332OHI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF793LQM 1249585 ENCODE Processing Pipeline 46014330a4f13d42ab6598026d20ab0f https://www.encodeproject.org/files/ENCFF332OHI/@@download/ENCFF332OHI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF891HET bigWig fold change over control ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF217JMI, ENCFF706WFS 178196630 ENCODE Processing Pipeline 550e2e2d4710ccc8e0d0d961367579e0 https://www.encodeproject.org/files/ENCFF891HET/@@download/ENCFF891HET.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF143NVN bigWig signal p-value ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF706WFS, ENCFF767ZGM 263054126 ENCODE Processing Pipeline 98b02ece4530da44651228064c536cf7 https://www.encodeproject.org/files/ENCFF143NVN/@@download/ENCFF143NVN.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF107RQF bigWig signal p-value ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF217JMI, ENCFF706WFS, ENCFF767ZGM 330411463 ENCODE Processing Pipeline abd1cc447c3573e9c6c478033f88e40b https://www.encodeproject.org/files/ENCFF107RQF/@@download/ENCFF107RQF.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF363OSO bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF493VQC 9650035 ENCODE Processing Pipeline abeec8f611f12a441aa2fb2edf8aba16 https://www.encodeproject.org/files/ENCFF363OSO/@@download/ENCFF363OSO.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF333PXD bigWig fold change over control ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF217JMI, ENCFF706WFS, ENCFF767ZGM 286706976 ENCODE Processing Pipeline cc3e2b839d8c560317367e1fc99f9bbf https://www.encodeproject.org/files/ENCFF333PXD/@@download/ENCFF333PXD.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF777VSN bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF706WFS, ENCFF767ZGM 2672218 ENCODE Processing Pipeline 27fe350d5804c3efdc4c6767efabe4b2 https://www.encodeproject.org/files/ENCFF777VSN/@@download/ENCFF777VSN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF923JPC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF649IRT 1303518 ENCODE Processing Pipeline 281abec060a2b0062ac566177e6dc0dd https://www.encodeproject.org/files/ENCFF923JPC/@@download/ENCFF923JPC.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF566PLK bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF777VSN 5495149 ENCODE Processing Pipeline 7be89296a77eface596ce0847e011ac4 https://www.encodeproject.org/files/ENCFF566PLK/@@download/ENCFF566PLK.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF263WKV bigBed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF829XOU 10782924 ENCODE Processing Pipeline c93aa4c17d99967573c00e8e3fd5dc52 https://www.encodeproject.org/files/ENCFF263WKV/@@download/ENCFF263WKV.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF793LQM bed narrowPeak conservative idr thresholded peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF493VQC, ENCFF777VSN, ENCFF829XOU 707447 ENCODE Processing Pipeline 73605bedfda8d8462bddf7ee36253022 https://www.encodeproject.org/files/ENCFF793LQM/@@download/ENCFF793LQM.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF000RDM bam alignments ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REA 1453012489 Richard Myers, HAIB 491032f3d0f9719f8b91cb7051649b93 https://www.encodeproject.org/files/ENCFF000RDM/@@download/ENCFF000RDM.bam hg19 released biological replicates with identical biosample ENCFF000RDN bigBed broadPeak peaks ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UQH 1296021 Richard Myers, HAIB a52ae0e454c0f729ca0cae45f7b92f7d https://www.encodeproject.org/files/ENCFF000RDN/@@download/ENCFF000RDN.bigBed hg19 released biological replicates with identical biosample ENCFF000RDO bigBed broadPeak peaks ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UQI 926099 Richard Myers, HAIB 1abab81f9ad7995291eaa113c91d9475 https://www.encodeproject.org/files/ENCFF000RDO/@@download/ENCFF000RDO.bigBed hg19 released biological replicates with identical biosample ENCFF000RDP bam alignments ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000REF 2512975078 Richard Myers, HAIB a7ad19d28432424b5bbc2609d244760b https://www.encodeproject.org/files/ENCFF000RDP/@@download/ENCFF000RDP.bam hg19 released biological replicates with identical biosample ENCFF000RDQ bigWig raw signal ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 366803752 Richard Myers, HAIB 9ae62511928ff81ddb39c2daa8e56e01 https://www.encodeproject.org/files/ENCFF000RDQ/@@download/ENCFF000RDQ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RDT bigWig raw signal ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 147278543 Richard Myers, HAIB 1db34f32b2532fdbd2dc3e1f1498fd7a https://www.encodeproject.org/files/ENCFF000RDT/@@download/ENCFF000RDT.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000REA fastq reads ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1466400968 Richard Myers, HAIB 50e6ace6026303c319c0364d700dc8a8 https://www.encodeproject.org/files/ENCFF000REA/@@download/ENCFF000REA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF000REF fastq reads ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2615832988 Richard Myers, HAIB 0088e4f20d81a4304bf3632bc275b7f5 https://www.encodeproject.org/files/ENCFF000REF/@@download/ENCFF000REF.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF001UQH bed broadPeak peaks ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 801259 Richard Myers, HAIB 252a2c5c1a37311c22122683e94e4fdc https://www.encodeproject.org/files/ENCFF001UQH/@@download/ENCFF001UQH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UQI bed broadPeak peaks ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 496923 Richard Myers, HAIB d841441abaa9f256502a8198ac080e39 https://www.encodeproject.org/files/ENCFF001UQI/@@download/ENCFF001UQI.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NTF bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NTS 732148044 Richard Myers, HAIB 6e3a790e78b9858d207af4d0f2481a49 https://www.encodeproject.org/files/ENCFF000NTF/@@download/ENCFF000NTF.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTG bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NTV 1225452186 Richard Myers, HAIB 79106e1fe92f00b8ec9582057afc6137 https://www.encodeproject.org/files/ENCFF000NTG/@@download/ENCFF000NTG.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTI bigBed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWL 853434 Richard Myers, HAIB 8442d10612e5c86f6efd5ff69b965acd https://www.encodeproject.org/files/ENCFF000NTI/@@download/ENCFF000NTI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTJ bigBed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWM 422576 Richard Myers, HAIB c75694ea091e7a308eaf6e6d2497dab9 https://www.encodeproject.org/files/ENCFF000NTJ/@@download/ENCFF000NTJ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NTK bigWig raw signal ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 18078508 Richard Myers, HAIB cb8b59f1f38ac1125a8058dd278e474a https://www.encodeproject.org/files/ENCFF000NTK/@@download/ENCFF000NTK.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NTM bigWig raw signal ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 20505001 Richard Myers, HAIB 1f41f8d0ea69510b55f3f6b4d679b3bc https://www.encodeproject.org/files/ENCFF000NTM/@@download/ENCFF000NTM.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NTS fastq reads ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 772866571 Richard Myers, HAIB 4719bfee507fdaf2aff47483116a5e2b https://www.encodeproject.org/files/ENCFF000NTS/@@download/ENCFF000NTS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF000NTV fastq reads ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1177773055 Richard Myers, HAIB 500816db69d3c7328da04d081ff62f0f https://www.encodeproject.org/files/ENCFF000NTV/@@download/ENCFF000NTV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWL bed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 462380 Richard Myers, HAIB cd090da1dfcbdaf52d7ea6923fda8227 https://www.encodeproject.org/files/ENCFF001TWL/@@download/ENCFF001TWL.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TWM bed broadPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 246997 Richard Myers, HAIB c1faa9b72ce2481246ca13d44818e42f https://www.encodeproject.org/files/ENCFF001TWM/@@download/ENCFF001TWM.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CGT bed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 119918 ENCODE Consortium Analysis Working Group cd8131abfae3d224d17aeabf9e7dd1f9 https://www.encodeproject.org/files/ENCFF002CGT/@@download/ENCFF002CGT.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF476LFV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGT 275922 ENCODE Consortium 74428b817bac7ee136ce666ccff19253 https://www.encodeproject.org/files/ENCFF476LFV/@@download/ENCFF476LFV.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF662GDH bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF807MUK 1091109495 ENCODE Processing Pipeline 88ec92f33ed18d2d22272957edbce8e0 https://www.encodeproject.org/files/ENCFF662GDH/@@download/ENCFF662GDH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF276KQJ bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF807MUK 710120009 ENCODE Processing Pipeline 10c3ccb031661a8ab100e1cf4c895bad https://www.encodeproject.org/files/ENCFF276KQJ/@@download/ENCFF276KQJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF800ZBG bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF807MUK 1550128692 ENCODE Processing Pipeline d0a9fb43c8f7f545feade72b5ed2a084 https://www.encodeproject.org/files/ENCFF800ZBG/@@download/ENCFF800ZBG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF797QYH bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF807MUK 1022192467 ENCODE Processing Pipeline 52e7eef633f862b9d2d4b190b1a81c9b https://www.encodeproject.org/files/ENCFF797QYH/@@download/ENCFF797QYH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF881AUO bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF643CGH 1093888173 ENCODE Processing Pipeline 9261054a67ab29dea38ca7bee77191a6 https://www.encodeproject.org/files/ENCFF881AUO/@@download/ENCFF881AUO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF250QDG bam unfiltered alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF643CGH 1551443400 ENCODE Processing Pipeline 26aaa62ae5c2712a914633da4ce8c892 https://www.encodeproject.org/files/ENCFF250QDG/@@download/ENCFF250QDG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF163XSL bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF643CGH 1028045683 ENCODE Processing Pipeline ca95d4f9dcce0229400b69e1267ba40a https://www.encodeproject.org/files/ENCFF163XSL/@@download/ENCFF163XSL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF809UVF bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF643CGH 712812891 ENCODE Processing Pipeline d5040a8a3f66f50ef633e709509d02ad https://www.encodeproject.org/files/ENCFF809UVF/@@download/ENCFF809UVF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF633VAX bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF809UVF 480272614 ENCODE Processing Pipeline 2658f0f730e4a5bbe1283f80e5897d5d https://www.encodeproject.org/files/ENCFF633VAX/@@download/ENCFF633VAX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF729GAG bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE, ENCFF809UVF 935492323 ENCODE Processing Pipeline 0ce5f35dffc3be831c0aaa692398703e https://www.encodeproject.org/files/ENCFF729GAG/@@download/ENCFF729GAG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF508YPS bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF809UVF 411733752 ENCODE Processing Pipeline 05a1418c757e361a429fc8d6bf501e0e https://www.encodeproject.org/files/ENCFF508YPS/@@download/ENCFF508YPS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF572KPX bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF962SVE 12675209 ENCODE Processing Pipeline 38b0368b943a8edc0ebf4315fa0ea9e2 https://www.encodeproject.org/files/ENCFF572KPX/@@download/ENCFF572KPX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF176LKF bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE 625341695 ENCODE Processing Pipeline 0867ac4796e990d14f1810d6aef5be06 https://www.encodeproject.org/files/ENCFF176LKF/@@download/ENCFF176LKF.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF870HVW bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE, ENCFF809UVF 890355764 ENCODE Processing Pipeline 67122bcc946b69cc441e99f9dbdaa8cd https://www.encodeproject.org/files/ENCFF870HVW/@@download/ENCFF870HVW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF962SVE bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF438FFV, ENCFF809UVF 5847160 ENCODE Processing Pipeline 892871ae3bc2d33caf1780c0d01e7edc https://www.encodeproject.org/files/ENCFF962SVE/@@download/ENCFF962SVE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF046VSY bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE 666594746 ENCODE Processing Pipeline 3b5c894e218d55dd5c543c71a7441d3a https://www.encodeproject.org/files/ENCFF046VSY/@@download/ENCFF046VSY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF376ZGQ bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE, ENCFF809UVF 7080927 ENCODE Processing Pipeline 883715647ae49afac7603e47721b356b https://www.encodeproject.org/files/ENCFF376ZGQ/@@download/ENCFF376ZGQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF180SGO bed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF313OEI, ENCFF376ZGQ, ENCFF419RSJ, ENCFF962SVE 377712 ENCODE Processing Pipeline aa32cdb64c97f0d9a4ab8e0758844149 https://www.encodeproject.org/files/ENCFF180SGO/@@download/ENCFF180SGO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF275LYR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF180SGO 755123 ENCODE Processing Pipeline 8eddc92cd2e9c224c0f72d808547a281 https://www.encodeproject.org/files/ENCFF275LYR/@@download/ENCFF275LYR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF587BJK bed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF313OEI, ENCFF376ZGQ, ENCFF419RSJ, ENCFF962SVE 419234 ENCODE Processing Pipeline 9dd4cdec593b5174cbc4f3ed4e3f91ca https://www.encodeproject.org/files/ENCFF587BJK/@@download/ENCFF587BJK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF313OEI bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163XSL, ENCFF438FFV, ENCFF488YYE 6424156 ENCODE Processing Pipeline c57a02e07873eadca766a115f0fd0f73 https://www.encodeproject.org/files/ENCFF313OEI/@@download/ENCFF313OEI.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF468YBP bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF313OEI 12942220 ENCODE Processing Pipeline a1b4c9e7a9fb6ef18370af1427bd55bc https://www.encodeproject.org/files/ENCFF468YBP/@@download/ENCFF468YBP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF869QTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587BJK 819878 ENCODE Processing Pipeline 5058d69aa396cd57575f8e71df8707f3 https://www.encodeproject.org/files/ENCFF869QTA/@@download/ENCFF869QTA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF801MTQ bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376ZGQ 13000538 ENCODE Processing Pipeline 45861746ec7bb3c61065108564ae524a https://www.encodeproject.org/files/ENCFF801MTQ/@@download/ENCFF801MTQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF815JCA bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 479206803 ENCODE Processing Pipeline 041d9102dfc73c268130a3133ea8c248 https://www.encodeproject.org/files/ENCFF815JCA/@@download/ENCFF815JCA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF090EWP bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 415814229 ENCODE Processing Pipeline baf44cc9024e31b48c15df3423c3380e https://www.encodeproject.org/files/ENCFF090EWP/@@download/ENCFF090EWP.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF290LOY bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 671072876 ENCODE Processing Pipeline e8e936eea2b5ebeac36087bb5ee6c482 https://www.encodeproject.org/files/ENCFF290LOY/@@download/ENCFF290LOY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF663AUC bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF596IAY 12937014 ENCODE Processing Pipeline d47c9d3b72fe6adffdee9b83f0a91d08 https://www.encodeproject.org/files/ENCFF663AUC/@@download/ENCFF663AUC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF596IAY bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 6443781 ENCODE Processing Pipeline 095302b6744b84ea2547f4ca832e1167 https://www.encodeproject.org/files/ENCFF596IAY/@@download/ENCFF596IAY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF590VTP bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276KQJ, ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 6957744 ENCODE Processing Pipeline b5b28df4ebd5beb9606fa8be4f8c3997 https://www.encodeproject.org/files/ENCFF590VTP/@@download/ENCFF590VTP.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF651ZJP bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF590VTP 12875942 ENCODE Processing Pipeline 304015fc67b93f07abd10198648e1d7c https://www.encodeproject.org/files/ENCFF651ZJP/@@download/ENCFF651ZJP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF525CFK bigWig signal p-value ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276KQJ, ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 734023547 ENCODE Processing Pipeline 19f022e5a38731bae2697db8957a2e33 https://www.encodeproject.org/files/ENCFF525CFK/@@download/ENCFF525CFK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF036IRJ bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 609263204 ENCODE Processing Pipeline f89053618d34176b38e8ce1cfd6f7060 https://www.encodeproject.org/files/ENCFF036IRJ/@@download/ENCFF036IRJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF488UUR bigWig fold change over control ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276KQJ, ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 898709893 ENCODE Processing Pipeline b1fe33d024462f6ef904796523cc4719 https://www.encodeproject.org/files/ENCFF488UUR/@@download/ENCFF488UUR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF591DYQ bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 5992434 ENCODE Processing Pipeline 29b8364052c75dd971eea56750045f7b https://www.encodeproject.org/files/ENCFF591DYQ/@@download/ENCFF591DYQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF639QPU bigBed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF591DYQ 12880951 ENCODE Processing Pipeline d05d64e5b0b63bae549b257a51a524f1 https://www.encodeproject.org/files/ENCFF639QPU/@@download/ENCFF639QPU.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF125YZO bed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF590VTP, ENCFF591DYQ, ENCFF596IAY 343187 ENCODE Processing Pipeline 7a0c8568a7e4953b44459e55da64dc13 https://www.encodeproject.org/files/ENCFF125YZO/@@download/ENCFF125YZO.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF633DTG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF125YZO 710361 ENCODE Processing Pipeline e958bc64eb79ffd3250c1e92f23eeb3b https://www.encodeproject.org/files/ENCFF633DTG/@@download/ENCFF633DTG.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF563QBC bed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF590VTP, ENCFF591DYQ, ENCFF596IAY 384864 ENCODE Processing Pipeline dbc8a781e1fbe9d3923a0952f41aab3f https://www.encodeproject.org/files/ENCFF563QBC/@@download/ENCFF563QBC.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF448FCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF563QBC 775280 ENCODE Processing Pipeline dc875a0dbf5da10ea6b46d9f7005f2e3 https://www.encodeproject.org/files/ENCFF448FCZ/@@download/ENCFF448FCZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF137VYP fastq reads ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 1 76 single-ended 1702609693 Bradley Bernstein, Broad 40d694ccb144ba8ef15a722afb545fa0 https://www.encodeproject.org/files/ENCFF137VYP/@@download/ENCFF137VYP.fastq.gz Illumina HiSeq 2500 /files/ENCFF028KGR/, /files/ENCFF656VEQ/, /files/ENCFF920FCI/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF968YZD fastq reads ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 1 76 single-ended 1864103294 Bradley Bernstein, Broad cd0bd7ff1870fe471aeb3bb5bc340877 https://www.encodeproject.org/files/ENCFF968YZD/@@download/ENCFF968YZD.fastq.gz Illumina HiSeq 2500 /files/ENCFF841FEP/ released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF460NNC bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 76 ENCFF643CGH, ENCFF968YZD 1635013440 ENCODE Processing Pipeline ebe8ad95ffe53edc9ff8499c985b47a7 https://www.encodeproject.org/files/ENCFF460NNC/@@download/ENCFF460NNC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF039BDP bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 76 ENCFF137VYP, ENCFF643CGH 516572193 ENCODE Processing Pipeline c5fd2e5e74128a86a7f25f439f55a645 https://www.encodeproject.org/files/ENCFF039BDP/@@download/ENCFF039BDP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF937GII bam unfiltered alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF643CGH, ENCFF968YZD 2089015787 ENCODE Processing Pipeline b7d52adc201cdbc0a807c33dff73b3ed https://www.encodeproject.org/files/ENCFF937GII/@@download/ENCFF937GII.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF897CXO bam unfiltered alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF137VYP, ENCFF643CGH 1558440437 ENCODE Processing Pipeline 86c9cbbaf43c22af54a0f253c3b62242 https://www.encodeproject.org/files/ENCFF897CXO/@@download/ENCFF897CXO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF750TXM bam unfiltered alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 76 ENCFF807MUK, ENCFF968YZD 2086076055 ENCODE Processing Pipeline 6a3cf1f2b799d6e48465ddecb52e2185 https://www.encodeproject.org/files/ENCFF750TXM/@@download/ENCFF750TXM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF989OXT bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 76 ENCFF137VYP, ENCFF807MUK 516265478 ENCODE Processing Pipeline 9f9e91ef1d179748ba1dab513bbcd3c3 https://www.encodeproject.org/files/ENCFF989OXT/@@download/ENCFF989OXT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF506SFP bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 76 ENCFF807MUK, ENCFF968YZD 1634078488 ENCODE Processing Pipeline ace5ba55325a82f3be0dcfbd75e41206 https://www.encodeproject.org/files/ENCFF506SFP/@@download/ENCFF506SFP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF802YYF bam unfiltered alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 76 ENCFF137VYP, ENCFF807MUK 1555701083 ENCODE Processing Pipeline e88b42765e8b361aab0804ec7b1278cb https://www.encodeproject.org/files/ENCFF802YYF/@@download/ENCFF802YYF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF460BDR bigWig signal p-value ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF346LNS, ENCFF696UZI, ENCFF989OXT 1091672419 ENCODE Processing Pipeline 67128457d8a4394a2fbf16ab602a5096 https://www.encodeproject.org/files/ENCFF460BDR/@@download/ENCFF460BDR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF474EPQ bigWig signal p-value ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF039BDP, ENCFF302IIT, ENCFF816XYV 1137407170 ENCODE Processing Pipeline 9a6625dc048383554b36d8173180eb79 https://www.encodeproject.org/files/ENCFF474EPQ/@@download/ENCFF474EPQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF206LVR bigWig signal p-value ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI 1350059048 ENCODE Processing Pipeline 26f7c7a6da3d19d34a5207d37ae4829f https://www.encodeproject.org/files/ENCFF206LVR/@@download/ENCFF206LVR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF264LLC bigWig signal p-value ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF302IIT, ENCFF460NNC, ENCFF816XYV 1397207428 ENCODE Processing Pipeline 79214db6ab5a8e7199946f561272d223 https://www.encodeproject.org/files/ENCFF264LLC/@@download/ENCFF264LLC.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF694ZOL bigWig signal p-value ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI, ENCFF989OXT 1379170338 ENCODE Processing Pipeline a6902eb695cc11f04d15bcc026ce5434 https://www.encodeproject.org/files/ENCFF694ZOL/@@download/ENCFF694ZOL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF682ZMZ bigWig signal p-value ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF039BDP, ENCFF302IIT, ENCFF460NNC, ENCFF816XYV 1405775916 ENCODE Processing Pipeline 8cd90a87a5c36af34da6eac5ab9f5303 https://www.encodeproject.org/files/ENCFF682ZMZ/@@download/ENCFF682ZMZ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF857PVU bigWig fold change over control ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF346LNS, ENCFF696UZI, ENCFF989OXT 554691730 ENCODE Processing Pipeline 455cffeb2ef4964ddfa39f6f967f52bb https://www.encodeproject.org/files/ENCFF857PVU/@@download/ENCFF857PVU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF045ORN bigWig fold change over control ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF039BDP, ENCFF302IIT, ENCFF816XYV 554219501 ENCODE Processing Pipeline 9417a528166bc3bec9d9447f71fccab3 https://www.encodeproject.org/files/ENCFF045ORN/@@download/ENCFF045ORN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF947LTF bigWig fold change over control ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI 1131011016 ENCODE Processing Pipeline 73b2adf78e108a2c2c312b0a87bf4d3b https://www.encodeproject.org/files/ENCFF947LTF/@@download/ENCFF947LTF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF851LAB bigWig fold change over control ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF302IIT, ENCFF460NNC, ENCFF816XYV 1128950041 ENCODE Processing Pipeline 90508891c8aa2c2ce052be6526dae4f5 https://www.encodeproject.org/files/ENCFF851LAB/@@download/ENCFF851LAB.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF824MLF bigWig fold change over control ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI, ENCFF989OXT 1354067994 ENCODE Processing Pipeline 46d62a5dd99d74179d9620d43bd30ba7 https://www.encodeproject.org/files/ENCFF824MLF/@@download/ENCFF824MLF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF343NOG bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF346LNS, ENCFF696UZI, ENCFF989OXT 3990576 ENCODE Processing Pipeline 9b0c6551da559fef334e85b3300d89b5 https://www.encodeproject.org/files/ENCFF343NOG/@@download/ENCFF343NOG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF339XVK bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI 5903649 ENCODE Processing Pipeline bb7c37656966b23123b9790192b394b4 https://www.encodeproject.org/files/ENCFF339XVK/@@download/ENCFF339XVK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF231ZKR bigWig fold change over control ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF039BDP, ENCFF302IIT, ENCFF460NNC, ENCFF816XYV 1355847169 ENCODE Processing Pipeline e92eb476a271f6aa303a9e14b355ddcd https://www.encodeproject.org/files/ENCFF231ZKR/@@download/ENCFF231ZKR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF456RUF bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI, ENCFF989OXT 6055919 ENCODE Processing Pipeline bf1bf64e8be2b3843b04fd028d6bc7a3 https://www.encodeproject.org/files/ENCFF456RUF/@@download/ENCFF456RUF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF392BCE bigBed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF343NOG 9337253 ENCODE Processing Pipeline a57149aa415b309ff53e57f91cd9be44 https://www.encodeproject.org/files/ENCFF392BCE/@@download/ENCFF392BCE.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF309GQK bigBed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF339XVK 11727617 ENCODE Processing Pipeline 60166d42a246d2b7aec5fd0c76cef718 https://www.encodeproject.org/files/ENCFF309GQK/@@download/ENCFF309GQK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF219RVT bigBed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF456RUF 11803786 ENCODE Processing Pipeline 8e8b03a0b0f7d73b5be785cbd7f8efb1 https://www.encodeproject.org/files/ENCFF219RVT/@@download/ENCFF219RVT.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF665EEL bigBed narrowPeak conservative idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF953IJF 953608 ENCODE Processing Pipeline f8c137a3e81691f4a5b43bf3d36c6fd0 https://www.encodeproject.org/files/ENCFF665EEL/@@download/ENCFF665EEL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF141MTA bed narrowPeak optimal idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF280NBE, ENCFF419RSJ, ENCFF745ZEU, ENCFF966VCG 675950 ENCODE Processing Pipeline f316cf0dccc103367863eed066e4e872 https://www.encodeproject.org/files/ENCFF141MTA/@@download/ENCFF141MTA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF953IJF bed narrowPeak conservative idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF001TDO, ENCFF339XVK, ENCFF343NOG, ENCFF456RUF 479250 ENCODE Processing Pipeline 90fd541d6a387b0191e9d03183024854 https://www.encodeproject.org/files/ENCFF953IJF/@@download/ENCFF953IJF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF745ZEU bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF039BDP, ENCFF302IIT, ENCFF816XYV 3904373 ENCODE Processing Pipeline c5cc7ee333adcf9f0415013566492df8 https://www.encodeproject.org/files/ENCFF745ZEU/@@download/ENCFF745ZEU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF586TYX bed narrowPeak optimal idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF001TDO, ENCFF339XVK, ENCFF343NOG, ENCFF456RUF 675274 ENCODE Processing Pipeline 2ac43f62ae79b7d5f01a73fcd51ae244 https://www.encodeproject.org/files/ENCFF586TYX/@@download/ENCFF586TYX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF280NBE bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF039BDP, ENCFF302IIT, ENCFF460NNC, ENCFF816XYV 6047051 ENCODE Processing Pipeline e3f811feebd5d8f9a251b0dca423cdc6 https://www.encodeproject.org/files/ENCFF280NBE/@@download/ENCFF280NBE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF678CWK bigBed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF745ZEU 9249644 ENCODE Processing Pipeline 3e1b1fba36dbfd93f750327a8eb2a44d https://www.encodeproject.org/files/ENCFF678CWK/@@download/ENCFF678CWK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF793GGP bigBed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF966VCG 11722254 ENCODE Processing Pipeline f4514fda9c3256002168df099c054f37 https://www.encodeproject.org/files/ENCFF793GGP/@@download/ENCFF793GGP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF004QIT bigBed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF280NBE 11802810 ENCODE Processing Pipeline 54a0f1b8dbc76c5753e12016512127f2 https://www.encodeproject.org/files/ENCFF004QIT/@@download/ENCFF004QIT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF584IIS bigBed narrowPeak conservative idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF241PJE 953266 ENCODE Processing Pipeline 2b153224ac469e84fb6ea3f9b74c32c1 https://www.encodeproject.org/files/ENCFF584IIS/@@download/ENCFF584IIS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF966VCG bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF302IIT, ENCFF460NNC, ENCFF816XYV 5890578 ENCODE Processing Pipeline a4b8562646181f25b0d977c1c30dc5d0 https://www.encodeproject.org/files/ENCFF966VCG/@@download/ENCFF966VCG.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF853SMC bigBed narrowPeak optimal idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF586TYX 1219275 ENCODE Processing Pipeline d3765cb972b8889032bb97662672e9f6 https://www.encodeproject.org/files/ENCFF853SMC/@@download/ENCFF853SMC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF241PJE bed narrowPeak conservative idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF280NBE, ENCFF419RSJ, ENCFF745ZEU, ENCFF966VCG 478337 ENCODE Processing Pipeline b69d194cecc499db77a1c80a61b877a6 https://www.encodeproject.org/files/ENCFF241PJE/@@download/ENCFF241PJE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF310RDO bigBed narrowPeak optimal idr thresholded peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1, 2 ENCFF141MTA 1221639 ENCODE Processing Pipeline a6df61215a5dd298930a333eec439ca5 https://www.encodeproject.org/files/ENCFF310RDO/@@download/ENCFF310RDO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF000YFN bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 1 367493908 Michael Snyder, Stanford 02b7d30e018db2996c7d0f28bd0c4f96 https://www.encodeproject.org/files/ENCFF000YFN/@@download/ENCFF000YFN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YFO bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VLZ 873554 Michael Snyder, Stanford 5bc3c8dde5d6a2022a4f72bfdc01c4f9 https://www.encodeproject.org/files/ENCFF000YFO/@@download/ENCFF000YFO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YFP fastq reads ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 780005974 Michael Snyder, Stanford 5cb62dd46abd1f3d9d7a031884fe5279 https://www.encodeproject.org/files/ENCFF000YFP/@@download/ENCFF000YFP.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YFR fastq reads ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1275356408 Michael Snyder, Stanford 701ba8b604469d0a5bea851d7cfa0453 https://www.encodeproject.org/files/ENCFF000YFR/@@download/ENCFF000YFR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YFT bigWig signal ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 371135403 Michael Snyder, Stanford 621fdc798641dc27875520888ed3d2ad https://www.encodeproject.org/files/ENCFF000YFT/@@download/ENCFF000YFT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YFU bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 1 599390497 Michael Snyder, Stanford a84781e7f5c1472812796f67f338ef91 https://www.encodeproject.org/files/ENCFF000YFU/@@download/ENCFF000YFU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VLZ bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 429763 Michael Snyder, Stanford 42895329fc8db2bc4549f005a13e4d72 https://www.encodeproject.org/files/ENCFF001VLZ/@@download/ENCFF001VLZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CVO bed narrowPeak optimal idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 101541 ENCODE Consortium Analysis Working Group ffaad9c424d927abf310d20c1269cd5a https://www.encodeproject.org/files/ENCFF002CVO/@@download/ENCFF002CVO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF178QZC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVO 322846 ENCODE Consortium 4f9e7683fb786b87da12ef4c2c1e3d89 https://www.encodeproject.org/files/ENCFF178QZC/@@download/ENCFF178QZC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF730CHT bam unfiltered alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YFP, ENCFF643CGH 906169151 ENCODE Processing Pipeline f89cd027b37a22206b952b4a98cb9399 https://www.encodeproject.org/files/ENCFF730CHT/@@download/ENCFF730CHT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF151GOI bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YFP, ENCFF643CGH 591346572 ENCODE Processing Pipeline 386cd41c15bee84a2fd42a5e926f0295 https://www.encodeproject.org/files/ENCFF151GOI/@@download/ENCFF151GOI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540DXB bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YFR, ENCFF643CGH 947719624 ENCODE Processing Pipeline f138ff61b48f7f4a7819d79925731769 https://www.encodeproject.org/files/ENCFF540DXB/@@download/ENCFF540DXB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF645XJA bam unfiltered alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YFR, ENCFF643CGH 1446138854 ENCODE Processing Pipeline 9c0432437d9f0df0814973ec5d048755 https://www.encodeproject.org/files/ENCFF645XJA/@@download/ENCFF645XJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF691LNQ bam unfiltered alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YFP, ENCFF807MUK 902152467 ENCODE Processing Pipeline 1908a88c1c413514a7edd9a529fa6711 https://www.encodeproject.org/files/ENCFF691LNQ/@@download/ENCFF691LNQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF751ATX bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YFP, ENCFF807MUK 591773013 ENCODE Processing Pipeline 7ec0030e9fa7e9a915ec86da5a4e2764 https://www.encodeproject.org/files/ENCFF751ATX/@@download/ENCFF751ATX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF736IWI bam unfiltered alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YFR, ENCFF807MUK 1439770751 ENCODE Processing Pipeline c8982cfb3f1380b8d40c422f127ca67e https://www.encodeproject.org/files/ENCFF736IWI/@@download/ENCFF736IWI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF866OHV bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YFR, ENCFF807MUK 948039971 ENCODE Processing Pipeline 54478e01f236d3e032539bcb2bf50fe8 https://www.encodeproject.org/files/ENCFF866OHV/@@download/ENCFF866OHV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF610LNB bigWig signal p-value ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF751ATX 381486908 ENCODE Processing Pipeline 1dfd68ad181c24c2848c41d1e7624837 https://www.encodeproject.org/files/ENCFF610LNB/@@download/ENCFF610LNB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF424SPZ bigWig signal p-value ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF710NTS, ENCFF751ATX, ENCFF866OHV 528578978 ENCODE Processing Pipeline 6676287d52c6c4f7083454733ece0910 https://www.encodeproject.org/files/ENCFF424SPZ/@@download/ENCFF424SPZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932JFE bigWig signal p-value ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF866OHV 411771527 ENCODE Processing Pipeline e76b90e2270bc18226cdbef7519ea351 https://www.encodeproject.org/files/ENCFF932JFE/@@download/ENCFF932JFE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848XPQ bigWig fold change over control ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF751ATX 309508355 ENCODE Processing Pipeline 9eb08e1450ee68e68df812899d9c8655 https://www.encodeproject.org/files/ENCFF848XPQ/@@download/ENCFF848XPQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF107CCL bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF751ATX 4278578 ENCODE Processing Pipeline b256805c9fc102b8db586279a1c74419 https://www.encodeproject.org/files/ENCFF107CCL/@@download/ENCFF107CCL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF183XFF bigWig fold change over control ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF710NTS, ENCFF751ATX, ENCFF866OHV 645558518 ENCODE Processing Pipeline e2c2f4e16c3596721ad2078fb70d4ad7 https://www.encodeproject.org/files/ENCFF183XFF/@@download/ENCFF183XFF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF276CQA bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF710NTS, ENCFF751ATX, ENCFF866OHV 5238136 ENCODE Processing Pipeline c3e066aff3729d33b326745168c36d54 https://www.encodeproject.org/files/ENCFF276CQA/@@download/ENCFF276CQA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF192EGX bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF276CQA 11089297 ENCODE Processing Pipeline dc39942ca5c19b10e6e1371953ebc5d6 https://www.encodeproject.org/files/ENCFF192EGX/@@download/ENCFF192EGX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF423EMU bed narrowPeak optimal idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF091TOR, ENCFF107CCL, ENCFF276CQA 88613 ENCODE Processing Pipeline 4a5e60199fc2e91ed05449790c0ead65 https://www.encodeproject.org/files/ENCFF423EMU/@@download/ENCFF423EMU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF846TVV bed narrowPeak conservative idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF091TOR, ENCFF107CCL, ENCFF276CQA 83592 ENCODE Processing Pipeline 6f07554d56f50cb18b66639ffb6a81b1 https://www.encodeproject.org/files/ENCFF846TVV/@@download/ENCFF846TVV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF950QFB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF423EMU 198351 ENCODE Processing Pipeline c50262f782492ef903825fbc96dd75da https://www.encodeproject.org/files/ENCFF950QFB/@@download/ENCFF950QFB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498DHC bigWig fold change over control ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF866OHV 450871568 ENCODE Processing Pipeline 62aaf9aa550162483da409b370bfcd86 https://www.encodeproject.org/files/ENCFF498DHC/@@download/ENCFF498DHC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF091TOR bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF866OHV 4520836 ENCODE Processing Pipeline 5e14d520c61c7a53b23765785084f5de https://www.encodeproject.org/files/ENCFF091TOR/@@download/ENCFF091TOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514WED bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107CCL 10457097 ENCODE Processing Pipeline 94eb176aba63e496ff3486ec0d447ac1 https://www.encodeproject.org/files/ENCFF514WED/@@download/ENCFF514WED.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF324SHA bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF091TOR 10988125 ENCODE Processing Pipeline 3bca88f56bb721f94615e1edea85b2e3 https://www.encodeproject.org/files/ENCFF324SHA/@@download/ENCFF324SHA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF556NSX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF846TVV 191543 ENCODE Processing Pipeline 0e4abda210781fb449ae058ef2dadf9a https://www.encodeproject.org/files/ENCFF556NSX/@@download/ENCFF556NSX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF872IPI bigWig signal p-value ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF151GOI 448176980 ENCODE Processing Pipeline 1efeb3c03886d5a274149316d43b1c6c https://www.encodeproject.org/files/ENCFF872IPI/@@download/ENCFF872IPI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF811NIN bigWig fold change over control ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF540DXB 447425505 ENCODE Processing Pipeline 4d64de2a1ff84244be492efef83618ce https://www.encodeproject.org/files/ENCFF811NIN/@@download/ENCFF811NIN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416UYQ bed narrowPeak conservative idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF063XMG, ENCFF419RSJ, ENCFF755GPS, ENCFF830GYV 82877 ENCODE Processing Pipeline 51c52fafc8050bd1966380f2a1562d17 https://www.encodeproject.org/files/ENCFF416UYQ/@@download/ENCFF416UYQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF323SNA bigWig signal p-value ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF540DXB 480298636 ENCODE Processing Pipeline 2ab3f9b3e142eff3e66624aced76e32d https://www.encodeproject.org/files/ENCFF323SNA/@@download/ENCFF323SNA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF334RMG bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF063XMG 10116991 ENCODE Processing Pipeline efbc0cf42b97bcc3a59d3a613abd3afa https://www.encodeproject.org/files/ENCFF334RMG/@@download/ENCFF334RMG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF581UYO bigWig signal p-value ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF151GOI, ENCFF540DXB 521082919 ENCODE Processing Pipeline 383f2a3ef84c5628e5312438a6fff9d2 https://www.encodeproject.org/files/ENCFF581UYO/@@download/ENCFF581UYO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF830GYV bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF540DXB 4526892 ENCODE Processing Pipeline 58b732d0067976bb8e450feb3f970194 https://www.encodeproject.org/files/ENCFF830GYV/@@download/ENCFF830GYV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF468XGW bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF755GPS 11080925 ENCODE Processing Pipeline 52d1e3b8c2f8d985fba4d751641f62ad https://www.encodeproject.org/files/ENCFF468XGW/@@download/ENCFF468XGW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF836PHI bigWig fold change over control ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF151GOI, ENCFF540DXB 637830508 ENCODE Processing Pipeline 429bf53e1801964eb532d577ce9ef779 https://www.encodeproject.org/files/ENCFF836PHI/@@download/ENCFF836PHI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF837NLG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF543FNN 198924 ENCODE Processing Pipeline 87048c758a83542b38c8633148556edf https://www.encodeproject.org/files/ENCFF837NLG/@@download/ENCFF837NLG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039GCV bigWig fold change over control ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF151GOI 309086968 ENCODE Processing Pipeline a5610ffe18ace56111835103acf092ad https://www.encodeproject.org/files/ENCFF039GCV/@@download/ENCFF039GCV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285RYB bigBed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF830GYV 11001060 ENCODE Processing Pipeline 4bd457875bb18e68b279394dbba06ee5 https://www.encodeproject.org/files/ENCFF285RYB/@@download/ENCFF285RYB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF166ARH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF416UYQ 190442 ENCODE Processing Pipeline 3daebe633b2c220a94639c14a23647e1 https://www.encodeproject.org/files/ENCFF166ARH/@@download/ENCFF166ARH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF063XMG bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF151GOI 3990323 ENCODE Processing Pipeline 61b8477415b3396c6b51d2f2da09eeed https://www.encodeproject.org/files/ENCFF063XMG/@@download/ENCFF063XMG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF755GPS bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF151GOI, ENCFF540DXB 5196760 ENCODE Processing Pipeline fa369f2e298e9a4823720660de359bb6 https://www.encodeproject.org/files/ENCFF755GPS/@@download/ENCFF755GPS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF543FNN bed narrowPeak optimal idr thresholded peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF063XMG, ENCFF419RSJ, ENCFF755GPS, ENCFF830GYV 88418 ENCODE Processing Pipeline 148db2913335434c4f79f4c04b546a2b https://www.encodeproject.org/files/ENCFF543FNN/@@download/ENCFF543FNN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF503DAG fastq reads ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 1 36 single-ended 1039591328 Bradley Bernstein, Broad a8b88f92398e3cedd649b5e0752aa1ee SRA:SRR5832801 https://www.encodeproject.org/files/ENCFF503DAG/@@download/ENCFF503DAG.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF220HNB fastq reads ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 1 36 single-ended 813317474 Bradley Bernstein, Broad 7619b278c1311f7ea87dc0dd5fc02742 SRA:SRR5832799 https://www.encodeproject.org/files/ENCFF220HNB/@@download/ENCFF220HNB.fastq.gz Illumina HiSeq 2500 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF935HUK fastq reads ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 2 36 single-ended 729146829 Bradley Bernstein, Broad e9d7f06d3c9c68d6170625129fdcdbf3 SRA:SRR5832800 https://www.encodeproject.org/files/ENCFF935HUK/@@download/ENCFF935HUK.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF513UKA bam unfiltered alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 36 ENCFF503DAG, ENCFF643CGH, ENCFF935HUK 2284939675 ENCODE Processing Pipeline 4dceb005241a9f7ec658f9c0474c69c1 https://www.encodeproject.org/files/ENCFF513UKA/@@download/ENCFF513UKA.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF103QIK bam unfiltered alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 36 ENCFF503DAG, ENCFF807MUK, ENCFF935HUK 2277152102 ENCODE Processing Pipeline f4dfc312d303bbe882d0ec194462a5be https://www.encodeproject.org/files/ENCFF103QIK/@@download/ENCFF103QIK.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF941KVE bam unfiltered alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 36 ENCFF220HNB, ENCFF807MUK 1179189652 ENCODE Processing Pipeline a023ed8080bcfa53f196eccd1a49002e https://www.encodeproject.org/files/ENCFF941KVE/@@download/ENCFF941KVE.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF098PQX bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 36 ENCFF220HNB, ENCFF643CGH 733295413 ENCODE Processing Pipeline b9447a5891a3b21c3970f045e977048a https://www.encodeproject.org/files/ENCFF098PQX/@@download/ENCFF098PQX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF265MNI bam unfiltered alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 36 ENCFF220HNB, ENCFF643CGH 1183797293 ENCODE Processing Pipeline 6c78a678b75200588d0befa133d4ef55 https://www.encodeproject.org/files/ENCFF265MNI/@@download/ENCFF265MNI.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF285FIN bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 36 ENCFF220HNB, ENCFF807MUK 733622325 ENCODE Processing Pipeline 8caab0ce4962611db36b3600b1ee9430 https://www.encodeproject.org/files/ENCFF285FIN/@@download/ENCFF285FIN.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF086MCV bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 36 ENCFF503DAG, ENCFF807MUK, ENCFF935HUK 1436976772 ENCODE Processing Pipeline d612d8b194ecc226811eff07bd8fef91 https://www.encodeproject.org/files/ENCFF086MCV/@@download/ENCFF086MCV.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF984CRF bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 36 ENCFF503DAG, ENCFF643CGH, ENCFF935HUK 1436672842 ENCODE Processing Pipeline 5f5c684a6a2595bfaca3c238a773b15d https://www.encodeproject.org/files/ENCFF984CRF/@@download/ENCFF984CRF.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF231BLT bigWig signal p-value ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 1766223170 ENCODE Processing Pipeline 386db5ed55134e9220cd73e310af83e8 https://www.encodeproject.org/files/ENCFF231BLT/@@download/ENCFF231BLT.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF340YOV bigWig signal p-value ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF086MCV, ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 2073842392 ENCODE Processing Pipeline a9bd67bf170bf99d4c693388485516e1 https://www.encodeproject.org/files/ENCFF340YOV/@@download/ENCFF340YOV.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF497RUM bigWig signal p-value ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF086MCV, ENCFF243MTV, ENCFF727XHW 1771154021 ENCODE Processing Pipeline c9d60f1a8a2be4827888a6272977c4b7 https://www.encodeproject.org/files/ENCFF497RUM/@@download/ENCFF497RUM.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF619ZAE bigWig fold change over control ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 1480249225 ENCODE Processing Pipeline e91f565c5c100e18df7f4901569ebf47 https://www.encodeproject.org/files/ENCFF619ZAE/@@download/ENCFF619ZAE.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF986VKS bigWig fold change over control ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF086MCV, ENCFF243MTV, ENCFF727XHW 1796126072 ENCODE Processing Pipeline 5616528521a06049c70c4cc95cf75237 https://www.encodeproject.org/files/ENCFF986VKS/@@download/ENCFF986VKS.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF713NBS bigBed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF039BYF 13394123 ENCODE Processing Pipeline 591d6cc190c12e9be83e0de6d1e66c3f https://www.encodeproject.org/files/ENCFF713NBS/@@download/ENCFF713NBS.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF004EVD bigWig fold change over control ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF086MCV, ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 2152688005 ENCODE Processing Pipeline cbde61e0110e17c58e16007f43edbdfb https://www.encodeproject.org/files/ENCFF004EVD/@@download/ENCFF004EVD.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF082PNM bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF086MCV, ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 7005055 ENCODE Processing Pipeline 84bfea1b99598799946741b1cb8da22d https://www.encodeproject.org/files/ENCFF082PNM/@@download/ENCFF082PNM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF768BPC bed narrowPeak optimal idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF039BYF, ENCFF082PNM, ENCFF712NLB 348369 ENCODE Processing Pipeline d359d1a080e0eb9236168fd93e3a2dff https://www.encodeproject.org/files/ENCFF768BPC/@@download/ENCFF768BPC.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF478UXD bigBed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF082PNM 12891810 ENCODE Processing Pipeline 54cfc2262c96090d4d423f85f63f3f6d https://www.encodeproject.org/files/ENCFF478UXD/@@download/ENCFF478UXD.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF165KWB bed narrowPeak conservative idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF039BYF, ENCFF082PNM, ENCFF712NLB 239317 ENCODE Processing Pipeline 2e7ab11c948337f2142551bb7caac445 https://www.encodeproject.org/files/ENCFF165KWB/@@download/ENCFF165KWB.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF039BYF bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 6513069 ENCODE Processing Pipeline 2e78380b77ef70ab29aae53dea3179b3 https://www.encodeproject.org/files/ENCFF039BYF/@@download/ENCFF039BYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF712NLB bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF086MCV, ENCFF243MTV, ENCFF727XHW 6800166 ENCODE Processing Pipeline 70988bbb9db02fb9077af0e48bc10bfe https://www.encodeproject.org/files/ENCFF712NLB/@@download/ENCFF712NLB.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF904JYC bigBed narrowPeak conservative idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF165KWB 453300 ENCODE Processing Pipeline 615cf356eb78609c98d6dab5cb5b3900 https://www.encodeproject.org/files/ENCFF904JYC/@@download/ENCFF904JYC.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF538IIE bigBed narrowPeak optimal idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF768BPC 594199 ENCODE Processing Pipeline 6e72772f63304a5bf5f1a77f95d09935 https://www.encodeproject.org/files/ENCFF538IIE/@@download/ENCFF538IIE.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF509VXG bigBed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF712NLB 12668728 ENCODE Processing Pipeline 85c76276b48e82a10f5eaa577e124abc https://www.encodeproject.org/files/ENCFF509VXG/@@download/ENCFF509VXG.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF404CXS bigWig signal p-value ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF064DDT, ENCFF098PQX, ENCFF504ZFN 1866507543 ENCODE Processing Pipeline 18c78e0306d60e6c920321ce59585868 https://www.encodeproject.org/files/ENCFF404CXS/@@download/ENCFF404CXS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF725OGA bigWig signal p-value ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF984CRF 1868862898 ENCODE Processing Pipeline f70a2dfb0d5a261b88c0c64ee1dc1c84 https://www.encodeproject.org/files/ENCFF725OGA/@@download/ENCFF725OGA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF297JUX bigWig signal p-value ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF064DDT, ENCFF098PQX, ENCFF504ZFN, ENCFF984CRF 1960634882 ENCODE Processing Pipeline aa9d99dc68f0f302c61e5ab30d98862c https://www.encodeproject.org/files/ENCFF297JUX/@@download/ENCFF297JUX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF272TTV bigWig fold change over control ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF064DDT, ENCFF098PQX, ENCFF504ZFN 1472884349 ENCODE Processing Pipeline 09269ffc21a1305e9a15c1e41c7dd220 https://www.encodeproject.org/files/ENCFF272TTV/@@download/ENCFF272TTV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF563SQA bigWig fold change over control ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF984CRF 1818993722 ENCODE Processing Pipeline 8e1f68cdcc324160d95c4b1b79ecd3b8 https://www.encodeproject.org/files/ENCFF563SQA/@@download/ENCFF563SQA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF095LSU bigBed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF267QXC 13400080 ENCODE Processing Pipeline 0d90a69a6c8536a56faf25d1c10f6a13 https://www.encodeproject.org/files/ENCFF095LSU/@@download/ENCFF095LSU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF264FJY bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF984CRF 6669980 ENCODE Processing Pipeline f9585ce4ea0c11aa7b05203c5b554fea https://www.encodeproject.org/files/ENCFF264FJY/@@download/ENCFF264FJY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF439SAK bigBed narrowPeak optimal idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF562OAN 609412 ENCODE Processing Pipeline 011e74cc45c2c8af8c7461048d5d1269 https://www.encodeproject.org/files/ENCFF439SAK/@@download/ENCFF439SAK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF222RPJ bigWig fold change over control ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF064DDT, ENCFF098PQX, ENCFF504ZFN, ENCFF984CRF 2104783946 ENCODE Processing Pipeline e60f26a471c6c235d477869f0293bf54 https://www.encodeproject.org/files/ENCFF222RPJ/@@download/ENCFF222RPJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF267QXC bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF064DDT, ENCFF098PQX, ENCFF504ZFN 6507574 ENCODE Processing Pipeline eec92e8af4b5ba1df114f1772302f238 https://www.encodeproject.org/files/ENCFF267QXC/@@download/ENCFF267QXC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF855ANW bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF064DDT, ENCFF098PQX, ENCFF504ZFN, ENCFF984CRF 6808165 ENCODE Processing Pipeline 1610830eafb588e43637dac1a8b0b6bc https://www.encodeproject.org/files/ENCFF855ANW/@@download/ENCFF855ANW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF412MLF bed narrowPeak conservative idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF264FJY, ENCFF267QXC, ENCFF419RSJ, ENCFF855ANW 237794 ENCODE Processing Pipeline 4f6f25b339738fc3bebeed7c0a7a586a https://www.encodeproject.org/files/ENCFF412MLF/@@download/ENCFF412MLF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF827SYQ bigBed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF264FJY 12505110 ENCODE Processing Pipeline dbbe5c74963db2546eab71b35d48bd73 https://www.encodeproject.org/files/ENCFF827SYQ/@@download/ENCFF827SYQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF562OAN bed narrowPeak optimal idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF264FJY, ENCFF267QXC, ENCFF419RSJ, ENCFF855ANW 360272 ENCODE Processing Pipeline 3a4ecb92e0a2dd51a44be48fae9384af https://www.encodeproject.org/files/ENCFF562OAN/@@download/ENCFF562OAN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF475KAW bigBed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF855ANW 12642480 ENCODE Processing Pipeline 802fc5deab7ce9fd9183310368c273e2 https://www.encodeproject.org/files/ENCFF475KAW/@@download/ENCFF475KAW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF339AAM bigBed narrowPeak conservative idr thresholded peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF412MLF 450389 ENCODE Processing Pipeline 28b314d92b08d6ce9409db694ba0fe28 https://www.encodeproject.org/files/ENCFF339AAM/@@download/ENCFF339AAM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF000WRG bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 1 513179721 Michael Snyder, Stanford 61774e13d1eea0218a760830d724b66b https://www.encodeproject.org/files/ENCFF000WRG/@@download/ENCFF000WRG.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WRH bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 1 632242656 Michael Snyder, Stanford 0c6f62506e4f5f2c15272087efdff78b https://www.encodeproject.org/files/ENCFF000WRH/@@download/ENCFF000WRH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WRI bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VGQ 1079920 Michael Snyder, Stanford 23198fbf9e45974a15fd40bb77077730 https://www.encodeproject.org/files/ENCFF000WRI/@@download/ENCFF000WRI.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRJ fastq reads ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1141351768 Michael Snyder, Stanford 40b0e5b30f10072db9bf53ca8dca4bc1 https://www.encodeproject.org/files/ENCFF000WRJ/@@download/ENCFF000WRJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRL fastq reads ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 908119534 Michael Snyder, Stanford e64b16930d02b0b7cb2b830bb3e4e260 https://www.encodeproject.org/files/ENCFF000WRL/@@download/ENCFF000WRL.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WRN bigWig signal ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 407447129 Michael Snyder, Stanford cb0cf9d4e86827c8e02633eb0176ca83 https://www.encodeproject.org/files/ENCFF000WRN/@@download/ENCFF000WRN.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VGQ bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 368632 Michael Snyder, Stanford 1a7c3d3d37ec307d31ef4baffdda87f3 https://www.encodeproject.org/files/ENCFF001VGQ/@@download/ENCFF001VGQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CQS bed narrowPeak optimal idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 59003 ENCODE Consortium Analysis Working Group ec39af486e81438e1a000f6734ea6ac4 https://www.encodeproject.org/files/ENCFF002CQS/@@download/ENCFF002CQS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF956ROY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CQS 237117 ENCODE Consortium 5ef203a0384082d92dd40d1db8709bc9 https://www.encodeproject.org/files/ENCFF956ROY/@@download/ENCFF956ROY.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228RNE bam unfiltered alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRL, ENCFF643CGH 1059296040 ENCODE Processing Pipeline 0e6e4d3a84a2b53e0ca373eb7296e247 https://www.encodeproject.org/files/ENCFF228RNE/@@download/ENCFF228RNE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF607NRH bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRL, ENCFF643CGH 719804904 ENCODE Processing Pipeline 9ad9592bc4c6f64555642d3936b037b2 https://www.encodeproject.org/files/ENCFF607NRH/@@download/ENCFF607NRH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF051TPA bam unfiltered alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRJ, ENCFF643CGH 1312697455 ENCODE Processing Pipeline b9048388c8aa0fca390e278888de4c7f https://www.encodeproject.org/files/ENCFF051TPA/@@download/ENCFF051TPA.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962DWV bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRJ, ENCFF643CGH 920276125 ENCODE Processing Pipeline 17a3c93dd9e6907fd004848e1b57718d https://www.encodeproject.org/files/ENCFF962DWV/@@download/ENCFF962DWV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF235NOS bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRL, ENCFF807MUK 720194144 ENCODE Processing Pipeline 433a2cd696db256b7fcd0bed1a43a0f0 https://www.encodeproject.org/files/ENCFF235NOS/@@download/ENCFF235NOS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF781UHR bam unfiltered alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRL, ENCFF807MUK 1053366794 ENCODE Processing Pipeline 9a1ab0dc1f355826bfc381b6f2ff04ca https://www.encodeproject.org/files/ENCFF781UHR/@@download/ENCFF781UHR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF100CJD bam unfiltered alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRJ, ENCFF807MUK 1307350469 ENCODE Processing Pipeline f3843b8f4cf8f455bf00d3c1dc1d8e34 https://www.encodeproject.org/files/ENCFF100CJD/@@download/ENCFF100CJD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF439HHQ bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRJ, ENCFF807MUK 920765077 ENCODE Processing Pipeline 53cb9652242ff1a409b18fd953ee7ef1 https://www.encodeproject.org/files/ENCFF439HHQ/@@download/ENCFF439HHQ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF763LGO bigWig signal p-value ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF962DWV 521570994 ENCODE Processing Pipeline 406a632c3e2415a9e299aad2d84edd4b https://www.encodeproject.org/files/ENCFF763LGO/@@download/ENCFF763LGO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF482VEW bigWig signal p-value ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF513EWK, ENCFF607NRH, ENCFF962DWV 758958082 ENCODE Processing Pipeline 2d0a21ebdd7d923f82efd99ba01c174b https://www.encodeproject.org/files/ENCFF482VEW/@@download/ENCFF482VEW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357FBC bigWig signal p-value ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF607NRH 532041408 ENCODE Processing Pipeline a2d3eaad80c12bc4b84311a67d6694f7 https://www.encodeproject.org/files/ENCFF357FBC/@@download/ENCFF357FBC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF708JWR bigWig fold change over control ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF962DWV 500638280 ENCODE Processing Pipeline f14a519939a1d4b22f1876988a9ff90a https://www.encodeproject.org/files/ENCFF708JWR/@@download/ENCFF708JWR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF193UAD bigWig fold change over control ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF607NRH 430371893 ENCODE Processing Pipeline efb54b2f56fb032b781bec0af51116b9 https://www.encodeproject.org/files/ENCFF193UAD/@@download/ENCFF193UAD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF563QHP bigWig fold change over control ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF513EWK, ENCFF607NRH, ENCFF962DWV 782445793 ENCODE Processing Pipeline 9fa15e4df4094247f998639920e59cda https://www.encodeproject.org/files/ENCFF563QHP/@@download/ENCFF563QHP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF402MBA bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF962DWV 4842420 ENCODE Processing Pipeline 081d88f4c0c53c3c93516c2944ce8953 https://www.encodeproject.org/files/ENCFF402MBA/@@download/ENCFF402MBA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF064BCY bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF607NRH 4523670 ENCODE Processing Pipeline ce6c0f1d9b893928c132601c82d82ece https://www.encodeproject.org/files/ENCFF064BCY/@@download/ENCFF064BCY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF632AQX bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF513EWK, ENCFF607NRH, ENCFF962DWV 1635444 ENCODE Processing Pipeline 0966b67d522c9a3db9b4a89a001c4559 https://www.encodeproject.org/files/ENCFF632AQX/@@download/ENCFF632AQX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818POD bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF402MBA 11222962 ENCODE Processing Pipeline 8c1b70e83dbf1becce8dd37113b25883 https://www.encodeproject.org/files/ENCFF818POD/@@download/ENCFF818POD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540JRQ bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF064BCY 11003683 ENCODE Processing Pipeline cd5d92c090a21be4f63e9acf74a33e05 https://www.encodeproject.org/files/ENCFF540JRQ/@@download/ENCFF540JRQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF714LGO bed narrowPeak conservative idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF064BCY, ENCFF402MBA, ENCFF419RSJ, ENCFF632AQX 34053 ENCODE Processing Pipeline a55ab09819e4344cd8b3ccea3278b04f https://www.encodeproject.org/files/ENCFF714LGO/@@download/ENCFF714LGO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF992KOV bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF632AQX 3889154 ENCODE Processing Pipeline 9bbb66682a0c8516e00486a00b076b85 https://www.encodeproject.org/files/ENCFF992KOV/@@download/ENCFF992KOV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF806HXY bed narrowPeak optimal idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF064BCY, ENCFF402MBA, ENCFF419RSJ, ENCFF632AQX 38520 ENCODE Processing Pipeline 5908ebf5322a0e548020dcde56401f9e https://www.encodeproject.org/files/ENCFF806HXY/@@download/ENCFF806HXY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF209MYT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF714LGO 130131 ENCODE Processing Pipeline 68c04b19c2980d04e2eafa3cd66a1103 https://www.encodeproject.org/files/ENCFF209MYT/@@download/ENCFF209MYT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF914HDZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF806HXY 138937 ENCODE Processing Pipeline fa35c96c6ad8fef1363b2d120f210e96 https://www.encodeproject.org/files/ENCFF914HDZ/@@download/ENCFF914HDZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF960IZA bigWig signal p-value ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF235NOS, ENCFF599MVB 562185502 ENCODE Processing Pipeline ccb5bb477417bf1a4d077bc60df07a90 https://www.encodeproject.org/files/ENCFF960IZA/@@download/ENCFF960IZA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF596NPF bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF235NOS, ENCFF439HHQ, ENCFF599MVB 1763617 ENCODE Processing Pipeline 6c81642801bbdbb5fd6016013c8d295d https://www.encodeproject.org/files/ENCFF596NPF/@@download/ENCFF596NPF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF556OXY bed narrowPeak conservative idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF230JPS, ENCFF596NPF, ENCFF653VPD 33407 ENCODE Processing Pipeline aa608715adbc87b3e191ac61290b610e https://www.encodeproject.org/files/ENCFF556OXY/@@download/ENCFF556OXY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF446JNG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF556OXY 127531 ENCODE Processing Pipeline af7ae9c479595e8d1038dd0c0c588031 https://www.encodeproject.org/files/ENCFF446JNG/@@download/ENCFF446JNG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF607EOG bed narrowPeak optimal idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF230JPS, ENCFF596NPF, ENCFF653VPD 39955 ENCODE Processing Pipeline ec82db6be939dc42c78bf6547264fba9 https://www.encodeproject.org/files/ENCFF607EOG/@@download/ENCFF607EOG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF219DOB bigWig signal p-value ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF235NOS, ENCFF439HHQ, ENCFF599MVB 765391213 ENCODE Processing Pipeline 633058529c1cf03e1e5b52465fcd99ff https://www.encodeproject.org/files/ENCFF219DOB/@@download/ENCFF219DOB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF344EQS bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF596NPF 4029704 ENCODE Processing Pipeline 88977e29dcfc06451ccd02b58362a750 https://www.encodeproject.org/files/ENCFF344EQS/@@download/ENCFF344EQS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780TFU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF607EOG 139270 ENCODE Processing Pipeline 61f37b7c707fa41c96e6311a559cd539 https://www.encodeproject.org/files/ENCFF780TFU/@@download/ENCFF780TFU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF317MKC bigWig signal p-value ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF439HHQ, ENCFF599MVB 592291293 ENCODE Processing Pipeline 460662857a47b39f8bde5361b452d231 https://www.encodeproject.org/files/ENCFF317MKC/@@download/ENCFF317MKC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF653VPD bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF439HHQ, ENCFF599MVB 5074864 ENCODE Processing Pipeline f387a8933b01d917ee0777dea79baea4 https://www.encodeproject.org/files/ENCFF653VPD/@@download/ENCFF653VPD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF230JPS bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF235NOS, ENCFF599MVB 4703593 ENCODE Processing Pipeline 11ca3dcdbd9fbedd66e09c3e64bf9a60 https://www.encodeproject.org/files/ENCFF230JPS/@@download/ENCFF230JPS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF822RNS bigWig fold change over control ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF439HHQ, ENCFF599MVB 513898362 ENCODE Processing Pipeline e187d19b9d975fb562731fe80d4e37b5 https://www.encodeproject.org/files/ENCFF822RNS/@@download/ENCFF822RNS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF728OFB bigWig fold change over control ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF235NOS, ENCFF599MVB 435390079 ENCODE Processing Pipeline 96f24c9f274d413644f669012963d38c https://www.encodeproject.org/files/ENCFF728OFB/@@download/ENCFF728OFB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF820QKH bigWig fold change over control ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF235NOS, ENCFF439HHQ, ENCFF599MVB 796311586 ENCODE Processing Pipeline 9ec98b14f73874379e6e9704432f9056 https://www.encodeproject.org/files/ENCFF820QKH/@@download/ENCFF820QKH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732WQC bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF653VPD 11279191 ENCODE Processing Pipeline 0034f02f7ef6e22549212bb4332c3f90 https://www.encodeproject.org/files/ENCFF732WQC/@@download/ENCFF732WQC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF766FZT bigBed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF230JPS 11108328 ENCODE Processing Pipeline 5ae8fae2e2879f66771d609c742dad1b https://www.encodeproject.org/files/ENCFF766FZT/@@download/ENCFF766FZT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF408DMA bam unfiltered alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF776VEC, ENCFF807MUK, ENCFF824ADC 6162790775 ENCODE Processing Pipeline 05f0010a1576438fb7729394275a5781 https://www.encodeproject.org/files/ENCFF408DMA/@@download/ENCFF408DMA.bam hg19 released ENCFF852GJO bam unfiltered alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF349FIQ, ENCFF807MUK, ENCFF845FIV 4596937297 ENCODE Processing Pipeline 7093132128d4d1011f2a75dfd6ce706b https://www.encodeproject.org/files/ENCFF852GJO/@@download/ENCFF852GJO.bam hg19 released ENCFF776VEC fastq reads ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 1 ENCFF824ADC 2900769036 Michael Snyder, Stanford 2609c57a4f5e25beb3051b50f481907c SRA:SRR5111418 https://www.encodeproject.org/files/ENCFF776VEC/@@download/ENCFF776VEC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released ENCFF845FIV fastq reads ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 1 ENCFF349FIQ 2102473935 Michael Snyder, Stanford be3c429c83bb3978c697195630e5819c SRA:SRR5111419 https://www.encodeproject.org/files/ENCFF845FIV/@@download/ENCFF845FIV.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released ENCFF349FIQ fastq reads ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 1 100 paired-ended 2 ENCFF845FIV 2150728626 Michael Snyder, Stanford cb3b0f3ded41b26a720b965e9d01d93d SRA:SRR5111419 https://www.encodeproject.org/files/ENCFF349FIQ/@@download/ENCFF349FIQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released ENCFF824ADC fastq reads ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 1 100 paired-ended 2 ENCFF776VEC 2902414297 Michael Snyder, Stanford 0790532abd2140b647745cbfd06adbf2 SRA:SRR5111418 https://www.encodeproject.org/files/ENCFF824ADC/@@download/ENCFF824ADC.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released ENCFF875HFU bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF349FIQ, ENCFF807MUK, ENCFF845FIV 3821353751 ENCODE Processing Pipeline 2cef74bfbe9c61120273fcee9457e24d https://www.encodeproject.org/files/ENCFF875HFU/@@download/ENCFF875HFU.bam hg19 released ENCFF666BDF bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF776VEC, ENCFF807MUK, ENCFF824ADC 4897300583 ENCODE Processing Pipeline 1946aa897e52402d73ec120ae8cc9b81 https://www.encodeproject.org/files/ENCFF666BDF/@@download/ENCFF666BDF.bam hg19 released ENCFF433NFO bigWig signal p-value ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF666BDF 1127147210 ENCODE Processing Pipeline 760ff8ba22b8b28a2005d1669207dd1e https://www.encodeproject.org/files/ENCFF433NFO/@@download/ENCFF433NFO.bigWig hg19 released ENCFF058RSO bigWig signal p-value ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666BDF, ENCFF875HFU 2108168265 ENCODE Processing Pipeline f0d989680af6cc7fae5efb0bc3e3ad3f https://www.encodeproject.org/files/ENCFF058RSO/@@download/ENCFF058RSO.bigWig hg19 released ENCFF025FKA bigWig fold change over control ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF666BDF 1139919642 ENCODE Processing Pipeline 89028f2a159147a7db3ed5abb526d515 https://www.encodeproject.org/files/ENCFF025FKA/@@download/ENCFF025FKA.bigWig hg19 released ENCFF120VOJ bigWig fold change over control ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666BDF, ENCFF875HFU 2087905037 ENCODE Processing Pipeline 502979c03897eff7d8d6a215a633bf96 https://www.encodeproject.org/files/ENCFF120VOJ/@@download/ENCFF120VOJ.bigWig hg19 released ENCFF682MBJ bam unfiltered alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF349FIQ, ENCFF643CGH, ENCFF845FIV 4600894427 ENCODE Processing Pipeline 9ac2d2fd9ca013c8ef025d5dc84c09b8 https://www.encodeproject.org/files/ENCFF682MBJ/@@download/ENCFF682MBJ.bam GRCh38 released ENCFF924RVG bam unfiltered alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF776VEC, ENCFF824ADC 6167426344 ENCODE Processing Pipeline 9a963eae949b9f56d1e4c875de44ea37 https://www.encodeproject.org/files/ENCFF924RVG/@@download/ENCFF924RVG.bam GRCh38 released ENCFF500YYZ bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF349FIQ, ENCFF643CGH, ENCFF845FIV 3823902143 ENCODE Processing Pipeline 47cc1ad8f932c7a6dada82bb38d05a30 https://www.encodeproject.org/files/ENCFF500YYZ/@@download/ENCFF500YYZ.bam GRCh38 released ENCFF717OYW bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF776VEC, ENCFF824ADC 4899233705 ENCODE Processing Pipeline 010d8d9a8297f4fe2ee8886476426617 https://www.encodeproject.org/files/ENCFF717OYW/@@download/ENCFF717OYW.bam GRCh38 released ENCFF058YNG bigWig signal p-value ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF500YYZ, ENCFF910IKB 1011782830 ENCODE Processing Pipeline f13531fec502ffe9388c3fbfcfaa7276 https://www.encodeproject.org/files/ENCFF058YNG/@@download/ENCFF058YNG.bigWig GRCh38 released ENCFF490NGF bigWig signal p-value ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF717OYW 1032451926 ENCODE Processing Pipeline 6582ecd26b62d82df3b26bee6419a2bd https://www.encodeproject.org/files/ENCFF490NGF/@@download/ENCFF490NGF.bigWig GRCh38 released ENCFF782FQH bigWig signal p-value ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF500YYZ, ENCFF717OYW, ENCFF910IKB 1897482371 ENCODE Processing Pipeline 32aa93beb1d1e8da08299f5b576b2bf8 https://www.encodeproject.org/files/ENCFF782FQH/@@download/ENCFF782FQH.bigWig GRCh38 released ENCFF870HUB bigWig fold change over control ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF500YYZ, ENCFF910IKB 1123758029 ENCODE Processing Pipeline 8fbfdc4ff2847fc9e6aabbf980427c33 https://www.encodeproject.org/files/ENCFF870HUB/@@download/ENCFF870HUB.bigWig GRCh38 released ENCFF445THV bigWig fold change over control ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF717OYW 1140314795 ENCODE Processing Pipeline 5dc1aeb487b8191121582711dd27ae7b https://www.encodeproject.org/files/ENCFF445THV/@@download/ENCFF445THV.bigWig GRCh38 released ENCFF498ZJU bigWig fold change over control ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF500YYZ, ENCFF717OYW, ENCFF910IKB 2122686870 ENCODE Processing Pipeline ede238f10b9336ff50878cca2736aa75 https://www.encodeproject.org/files/ENCFF498ZJU/@@download/ENCFF498ZJU.bigWig GRCh38 released ENCFF722AOG bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF500YYZ, ENCFF910IKB 6762980 ENCODE Processing Pipeline 33d4328fe4ff3a472edff81bf8f5d566 https://www.encodeproject.org/files/ENCFF722AOG/@@download/ENCFF722AOG.bed.gz GRCh38 released ENCFF155HVK bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF227IZS, ENCFF717OYW 6948068 ENCODE Processing Pipeline 02fd518818560c28ed20ed98f4c291bd https://www.encodeproject.org/files/ENCFF155HVK/@@download/ENCFF155HVK.bed.gz GRCh38 released ENCFF316ASR bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF227IZS, ENCFF500YYZ, ENCFF717OYW, ENCFF910IKB 7235161 ENCODE Processing Pipeline 50e19bd44174bb286aa28ae2a15e7b8f https://www.encodeproject.org/files/ENCFF316ASR/@@download/ENCFF316ASR.bed.gz GRCh38 released ENCFF116CHF bigBed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF722AOG 13236999 ENCODE Processing Pipeline 08cf6f0a0a5b037c27758091d27a0aa1 https://www.encodeproject.org/files/ENCFF116CHF/@@download/ENCFF116CHF.bigBed GRCh38 released ENCFF061VHJ bigBed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF155HVK 13147946 ENCODE Processing Pipeline 0338e747db96ff7857f78204b69de8fe https://www.encodeproject.org/files/ENCFF061VHJ/@@download/ENCFF061VHJ.bigBed GRCh38 released ENCFF147ZDD bigBed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF316ASR 12965213 ENCODE Processing Pipeline 03535ac67e2b43e535f760c6d6328934 https://www.encodeproject.org/files/ENCFF147ZDD/@@download/ENCFF147ZDD.bigBed GRCh38 released ENCFF319TPR bed narrowPeak conservative idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF155HVK, ENCFF316ASR, ENCFF419RSJ, ENCFF722AOG 308195 ENCODE Processing Pipeline 9cd65cf4f07b83af35770c4a098fd4c6 https://www.encodeproject.org/files/ENCFF319TPR/@@download/ENCFF319TPR.bed.gz GRCh38 released ENCFF048SFX bigBed narrowPeak conservative idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF319TPR 673733 ENCODE Processing Pipeline ecc3c9aa4c229f06473a3c4e6d37cac0 https://www.encodeproject.org/files/ENCFF048SFX/@@download/ENCFF048SFX.bigBed GRCh38 released ENCFF553KIK bed narrowPeak optimal idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF155HVK, ENCFF316ASR, ENCFF419RSJ, ENCFF722AOG 416663 ENCODE Processing Pipeline a5af5857bfbc3bfc8fea09cb90e67a16 https://www.encodeproject.org/files/ENCFF553KIK/@@download/ENCFF553KIK.bed.gz GRCh38 released ENCFF311HAR bigBed narrowPeak optimal idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF553KIK 843316 ENCODE Processing Pipeline 1154c5d56042354c180f912da61d5e47 https://www.encodeproject.org/files/ENCFF311HAR/@@download/ENCFF311HAR.bigBed GRCh38 released ENCFF909JNU bigWig signal p-value ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF875HFU 1085262255 ENCODE Processing Pipeline 3fce664502e520aefd6cac7dc9f1b6ab https://www.encodeproject.org/files/ENCFF909JNU/@@download/ENCFF909JNU.bigWig hg19 released ENCFF865EQG bigWig fold change over control ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF875HFU 1144406084 ENCODE Processing Pipeline d3a59c5cb47b7eaacc979f3a032d5c3e https://www.encodeproject.org/files/ENCFF865EQG/@@download/ENCFF865EQG.bigWig hg19 released ENCFF129WGK bigBed narrowPeak optimal idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF407AOX 840883 ENCODE Processing Pipeline 0405307fe887b3d6b2a14112e3d741c5 https://www.encodeproject.org/files/ENCFF129WGK/@@download/ENCFF129WGK.bigBed hg19 released ENCFF809AGT bigBed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF295KFV 13122911 ENCODE Processing Pipeline 01372e3c68cc772397ad4410a3ca1379 https://www.encodeproject.org/files/ENCFF809AGT/@@download/ENCFF809AGT.bigBed hg19 released ENCFF837KWS bigBed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF597MUA 13227457 ENCODE Processing Pipeline 67ba52a20096768128916562b0aab729 https://www.encodeproject.org/files/ENCFF837KWS/@@download/ENCFF837KWS.bigBed hg19 released ENCFF846MNB bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666BDF, ENCFF875HFU 7230895 ENCODE Processing Pipeline 7f90af1afbe228c27a92cc79aea4dfc1 https://www.encodeproject.org/files/ENCFF846MNB/@@download/ENCFF846MNB.bed.gz hg19 released ENCFF407AOX bed narrowPeak optimal idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF295KFV, ENCFF597MUA, ENCFF846MNB 415569 ENCODE Processing Pipeline 66b1a2d68c92fbeb25faa3e5e7de339a https://www.encodeproject.org/files/ENCFF407AOX/@@download/ENCFF407AOX.bed.gz hg19 released ENCFF597MUA bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF875HFU 6760876 ENCODE Processing Pipeline 1ae57fda98146bd40cef8c7399d85572 https://www.encodeproject.org/files/ENCFF597MUA/@@download/ENCFF597MUA.bed.gz hg19 released ENCFF295KFV bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF666BDF 6937560 ENCODE Processing Pipeline b92d3204db03532d0f6a6daf12d76ac8 https://www.encodeproject.org/files/ENCFF295KFV/@@download/ENCFF295KFV.bed.gz hg19 released ENCFF791BWM bigBed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF846MNB 12965050 ENCODE Processing Pipeline ea668954c9023310785085631f8bdc9f https://www.encodeproject.org/files/ENCFF791BWM/@@download/ENCFF791BWM.bigBed hg19 released ENCFF552ISB bigBed narrowPeak conservative idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF568FLE 668264 ENCODE Processing Pipeline 1854a414fea2e91a752e3944d672d6f2 https://www.encodeproject.org/files/ENCFF552ISB/@@download/ENCFF552ISB.bigBed hg19 released ENCFF568FLE bed narrowPeak conservative idr thresholded peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1, 2 ENCFF001TDO, ENCFF295KFV, ENCFF597MUA, ENCFF846MNB 305483 ENCODE Processing Pipeline 0673b3135cd30ac0509e0fc4ec01edb6 https://www.encodeproject.org/files/ENCFF568FLE/@@download/ENCFF568FLE.bed.gz hg19 released ENCFF000VPY bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001VDR 1291033 Michael Snyder, Stanford b0b424131aae5f7eac3a095d0d8af884 https://www.encodeproject.org/files/ENCFF000VPY/@@download/ENCFF000VPY.bigBed hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VPZ fastq reads ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1081959861 Michael Snyder, Stanford 5878b54a85b6f3122ef9a0a68b2de9c7 https://www.encodeproject.org/files/ENCFF000VPZ/@@download/ENCFF000VPZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPI/ released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQB fastq reads ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1023179643 Michael Snyder, Stanford 4a3279c4c8d26f03bbfffc4d33070cf1 https://www.encodeproject.org/files/ENCFF000VQB/@@download/ENCFF000VQB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPK/ released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQD bigWig signal ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000VQE, ENCFF000VQF 427400062 Michael Snyder, Stanford d912dafda596576ebe54146c24eaf24d https://www.encodeproject.org/files/ENCFF000VQD/@@download/ENCFF000VQD.bigWig hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQE bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 1 ENCFF000VPZ 623077243 Michael Snyder, Stanford eca9c3873dc788544f1db29e1f39e7c6 https://www.encodeproject.org/files/ENCFF000VQE/@@download/ENCFF000VQE.bam hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VQF bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 1 ENCFF000VQB 587778414 Michael Snyder, Stanford 288fc1656ab0b5424593b5e6dd9b486f https://www.encodeproject.org/files/ENCFF000VQF/@@download/ENCFF000VQF.bam hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VDR bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000VQE, ENCFF000VQF 526878 Michael Snyder, Stanford 73592637ff673ddcca3c450b998997ce https://www.encodeproject.org/files/ENCFF001VDR/@@download/ENCFF001VDR.bed.gz hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF002COF bed narrowPeak optimal idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000VQE, ENCFF000VQF 90261 ENCODE Consortium Analysis Working Group a21ecc3c8c7e1b9d29b741c7c12bb662 https://www.encodeproject.org/files/ENCFF002COF/@@download/ENCFF002COF.bed.gz hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF373YAE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002COF 272154 ENCODE Consortium 84e1536010bf58f8e74e9ebc93c36ae4 https://www.encodeproject.org/files/ENCFF373YAE/@@download/ENCFF373YAE.bigBed hg19 archived low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF277FFH bam unfiltered alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQB, ENCFF643CGH 1170070703 ENCODE Processing Pipeline 5033b9d351d506b0080cfd333883ab71 https://www.encodeproject.org/files/ENCFF277FFH/@@download/ENCFF277FFH.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF534RCN bam unfiltered alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VPZ, ENCFF643CGH 1240246190 ENCODE Processing Pipeline 28bd2c916f08d21a76400ba08006e954 https://www.encodeproject.org/files/ENCFF534RCN/@@download/ENCFF534RCN.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF069MCY bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQB, ENCFF643CGH 818367496 ENCODE Processing Pipeline 408a7afced3ef08ad6bcdd71142131d7 https://www.encodeproject.org/files/ENCFF069MCY/@@download/ENCFF069MCY.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF131TIR bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VPZ, ENCFF643CGH 876519024 ENCODE Processing Pipeline aa5d86cc01e63dfafe6af2ed118e7bb9 https://www.encodeproject.org/files/ENCFF131TIR/@@download/ENCFF131TIR.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF174RPU bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQB, ENCFF807MUK 818920250 ENCODE Processing Pipeline 94e06bac69cb0f2f47e531f6fd1ae275 https://www.encodeproject.org/files/ENCFF174RPU/@@download/ENCFF174RPU.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF376KQO bam unfiltered alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQB, ENCFF807MUK 1165881844 ENCODE Processing Pipeline 09c88e86b2dcea118cbae117bc75506c https://www.encodeproject.org/files/ENCFF376KQO/@@download/ENCFF376KQO.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF098WTB bam unfiltered alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VPZ, ENCFF807MUK 1235763657 ENCODE Processing Pipeline c3eec76a98863a64e709559146fcb2bf https://www.encodeproject.org/files/ENCFF098WTB/@@download/ENCFF098WTB.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF011EEZ bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VPZ, ENCFF807MUK 876979463 ENCODE Processing Pipeline 264671d52ef1bd11f210d97cb5ce98b1 https://www.encodeproject.org/files/ENCFF011EEZ/@@download/ENCFF011EEZ.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF561FIX bigWig signal p-value ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF131TIR, ENCFF777NWU, ENCFF857MFM 681050787 ENCODE Processing Pipeline 6b5e266be2d13de2f80c4a29f660375f https://www.encodeproject.org/files/ENCFF561FIX/@@download/ENCFF561FIX.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF776IJI bigWig fold change over control ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF131TIR, ENCFF777NWU, ENCFF857MFM 486128246 ENCODE Processing Pipeline b718fd5c05793eea2e54c4899e166e73 https://www.encodeproject.org/files/ENCFF776IJI/@@download/ENCFF776IJI.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF211NJF bigWig signal p-value ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF069MCY, ENCFF777NWU, ENCFF857MFM 593108577 ENCODE Processing Pipeline 42468bb2ee623a9c7a674be26bd08ae4 https://www.encodeproject.org/files/ENCFF211NJF/@@download/ENCFF211NJF.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF020GFI bigWig fold change over control ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF069MCY, ENCFF777NWU, ENCFF857MFM 418919208 ENCODE Processing Pipeline 9dfb5c57441653c738f6b85825826d9f https://www.encodeproject.org/files/ENCFF020GFI/@@download/ENCFF020GFI.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF737ZKN bigWig signal p-value ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069MCY, ENCFF131TIR, ENCFF777NWU, ENCFF857MFM 795965470 ENCODE Processing Pipeline 09fbfdb51b2b40375b5ea694d7e11588 https://www.encodeproject.org/files/ENCFF737ZKN/@@download/ENCFF737ZKN.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF356QCU bigWig fold change over control ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069MCY, ENCFF131TIR, ENCFF777NWU, ENCFF857MFM 794672444 ENCODE Processing Pipeline 7c4539690f5718c5ec6f87cc6a3bc584 https://www.encodeproject.org/files/ENCFF356QCU/@@download/ENCFF356QCU.bigWig GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF226CQC bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF131TIR, ENCFF777NWU, ENCFF857MFM 6208066 ENCODE Processing Pipeline 29adf8f5bea86821533422935e15254c https://www.encodeproject.org/files/ENCFF226CQC/@@download/ENCFF226CQC.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF301UKY bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF069MCY, ENCFF131TIR, ENCFF777NWU, ENCFF857MFM 6934816 ENCODE Processing Pipeline 79019c08efad36d774a1d8605c6b4143 https://www.encodeproject.org/files/ENCFF301UKY/@@download/ENCFF301UKY.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF999ULL bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF069MCY, ENCFF777NWU, ENCFF857MFM 6216095 ENCODE Processing Pipeline a1d528f9d67317e0990125f3fb4916c6 https://www.encodeproject.org/files/ENCFF999ULL/@@download/ENCFF999ULL.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF150XGB bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF226CQC 12830654 ENCODE Processing Pipeline db201d17a331dca5fab6bb950e5611d3 https://www.encodeproject.org/files/ENCFF150XGB/@@download/ENCFF150XGB.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF629LBT bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF301UKY 12671270 ENCODE Processing Pipeline d8af96a6af03aab1223081420e6f72f1 https://www.encodeproject.org/files/ENCFF629LBT/@@download/ENCFF629LBT.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF974RUK bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF999ULL 12720571 ENCODE Processing Pipeline eac8b66ca58adf34afef1a49bf2e6680 https://www.encodeproject.org/files/ENCFF974RUK/@@download/ENCFF974RUK.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF156MIR bed narrowPeak optimal idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF226CQC, ENCFF301UKY, ENCFF419RSJ, ENCFF999ULL 122318 ENCODE Processing Pipeline 78d654ebfbce20a6071888bed8c57dde https://www.encodeproject.org/files/ENCFF156MIR/@@download/ENCFF156MIR.bed.gz GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF202FOI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF156MIR 348552 ENCODE Processing Pipeline 2505ecda35acd40f86b8992fe020a306 https://www.encodeproject.org/files/ENCFF202FOI/@@download/ENCFF202FOI.bigBed GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF849HCP bigWig signal p-value ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF011EEZ, ENCFF296BML, ENCFF512WDI 577687201 ENCODE Processing Pipeline 3183892df495707e28f88879712d59ba https://www.encodeproject.org/files/ENCFF849HCP/@@download/ENCFF849HCP.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF695AKF bigWig fold change over control ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF174RPU, ENCFF296BML, ENCFF512WDI 458471175 ENCODE Processing Pipeline 522d875e3c8a42fd4b45d4aacccf9895 https://www.encodeproject.org/files/ENCFF695AKF/@@download/ENCFF695AKF.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF202UGG bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF900EDP 12638900 ENCODE Processing Pipeline 602c7188bd186e69dd0f32ee8e9dd98b https://www.encodeproject.org/files/ENCFF202UGG/@@download/ENCFF202UGG.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF727FFN bigWig signal p-value ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF174RPU, ENCFF296BML, ENCFF512WDI 601114195 ENCODE Processing Pipeline c4e400a1dbb01803e2464aa3f47184f0 https://www.encodeproject.org/files/ENCFF727FFN/@@download/ENCFF727FFN.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF473EGZ bigWig fold change over control ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF011EEZ, ENCFF174RPU, ENCFF296BML, ENCFF512WDI 812116684 ENCODE Processing Pipeline d1e0e88afc0b85247fc8055581df8e59 https://www.encodeproject.org/files/ENCFF473EGZ/@@download/ENCFF473EGZ.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF168YSB bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF011EEZ, ENCFF296BML, ENCFF512WDI 6231196 ENCODE Processing Pipeline fe5f4b7e075b32abf06990fd56214364 https://www.encodeproject.org/files/ENCFF168YSB/@@download/ENCFF168YSB.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF899TLF bed narrowPeak conservative idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF047LZG, ENCFF168YSB, ENCFF900EDP 122702 ENCODE Processing Pipeline 9614c877b229004c9576e754bdb558f2 https://www.encodeproject.org/files/ENCFF899TLF/@@download/ENCFF899TLF.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF512RCP bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF047LZG 12755467 ENCODE Processing Pipeline 0fa407a5f574b45e1fa7172877c46bd9 https://www.encodeproject.org/files/ENCFF512RCP/@@download/ENCFF512RCP.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF874ONS bigWig fold change over control ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF011EEZ, ENCFF296BML, ENCFF512WDI 506660146 ENCODE Processing Pipeline c4a72334cca80fab9d2351b4114ba26c https://www.encodeproject.org/files/ENCFF874ONS/@@download/ENCFF874ONS.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF900EDP bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF011EEZ, ENCFF174RPU, ENCFF296BML, ENCFF512WDI 6959924 ENCODE Processing Pipeline aa5c6b6eb2fad11dc582b42dfd25fc66 https://www.encodeproject.org/files/ENCFF900EDP/@@download/ENCFF900EDP.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF768ZWJ bigBed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF168YSB 12851250 ENCODE Processing Pipeline 64dfca7ceacb3691f85740f7d055e135 https://www.encodeproject.org/files/ENCFF768ZWJ/@@download/ENCFF768ZWJ.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF290ROR bed narrowPeak optimal idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF047LZG, ENCFF168YSB, ENCFF900EDP 124435 ENCODE Processing Pipeline 111bc8dd528f8e8586528f8915e58ec7 https://www.encodeproject.org/files/ENCFF290ROR/@@download/ENCFF290ROR.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF802KNI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF290ROR 350996 ENCODE Processing Pipeline 0dd0b2499012bc01793d0dca0952936d https://www.encodeproject.org/files/ENCFF802KNI/@@download/ENCFF802KNI.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF025DNG bigWig signal p-value ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF011EEZ, ENCFF174RPU, ENCFF296BML, ENCFF512WDI 806423046 ENCODE Processing Pipeline 5169268bb31bb3d3bc6fa53f46a8f7a0 https://www.encodeproject.org/files/ENCFF025DNG/@@download/ENCFF025DNG.bigWig hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF047LZG bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF174RPU, ENCFF296BML, ENCFF512WDI 6243882 ENCODE Processing Pipeline e0c1c56a7d7c53a842ea590b40ebff66 https://www.encodeproject.org/files/ENCFF047LZG/@@download/ENCFF047LZG.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF546QDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF899TLF 346534 ENCODE Processing Pipeline 67449ca731ee2653932ec572b1028d60 https://www.encodeproject.org/files/ENCFF546QDZ/@@download/ENCFF546QDZ.bigBed hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001GYI bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYV 332485775 John Stamatoyannopoulos, UW e113c11d354ecd7e335e3a5c65023652 https://www.encodeproject.org/files/ENCFF001GYI/@@download/ENCFF001GYI.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYJ bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYX 1257821916 John Stamatoyannopoulos, UW d09a69a2229a77c01b1a5e367242f53d https://www.encodeproject.org/files/ENCFF001GYJ/@@download/ENCFF001GYJ.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYK bigBed broadPeak hotspots ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMJ 2925007 John Stamatoyannopoulos, UW cc4be6a4a5bb482ee50fb423ef664f91 https://www.encodeproject.org/files/ENCFF001GYK/@@download/ENCFF001GYK.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYL bigBed broadPeak hotspots ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XML 3862579 John Stamatoyannopoulos, UW d1a12f57d26db64ecb58e9f53688e5a4 https://www.encodeproject.org/files/ENCFF001GYL/@@download/ENCFF001GYL.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYM bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMK 995180 John Stamatoyannopoulos, UW 73923df04cc95ea9bb7d5c65f4f052ba https://www.encodeproject.org/files/ENCFF001GYM/@@download/ENCFF001GYM.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYN bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMM 1090928 John Stamatoyannopoulos, UW acfdd838d398ba34b171711855efdd56 https://www.encodeproject.org/files/ENCFF001GYN/@@download/ENCFF001GYN.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYR bigWig raw signal ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYI 88992110 John Stamatoyannopoulos, UW 90307ca2c7c770a47b7072b21c580914 https://www.encodeproject.org/files/ENCFF001GYR/@@download/ENCFF001GYR.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYS bigWig raw signal ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYJ 218221201 John Stamatoyannopoulos, UW b76360d2abe506372110a89333291b44 https://www.encodeproject.org/files/ENCFF001GYS/@@download/ENCFF001GYS.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYV fastq reads ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 365909463 John Stamatoyannopoulos, UW 243df992d899cf5801f0c254d2588188 https://www.encodeproject.org/files/ENCFF001GYV/@@download/ENCFF001GYV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GZF/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001GYX fastq reads ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1376295193 John Stamatoyannopoulos, UW 1b75344527ce3e452d6d6bfdbfa9a4ff https://www.encodeproject.org/files/ENCFF001GYX/@@download/ENCFF001GYX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GZF/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XMJ bed broadPeak hotspots ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYI 2006688 John Stamatoyannopoulos, UW b77167142488eb7263267d423366dac4 https://www.encodeproject.org/files/ENCFF001XMJ/@@download/ENCFF001XMJ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XMK bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYI 696772 John Stamatoyannopoulos, UW 775189b2ba228c134a86ad7c225b47ae https://www.encodeproject.org/files/ENCFF001XMK/@@download/ENCFF001XMK.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XML bed broadPeak hotspots ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYJ 2719558 John Stamatoyannopoulos, UW a8889d77a3d6ab9a28eddf306654d14f https://www.encodeproject.org/files/ENCFF001XML/@@download/ENCFF001XML.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF001XMM bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYJ 775525 John Stamatoyannopoulos, UW 2b0104a1d500acf85ebd1165d5d33d8d https://www.encodeproject.org/files/ENCFF001XMM/@@download/ENCFF001XMM.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF002DCA bed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GYI, ENCFF001GYJ 922298 ENCODE Consortium Analysis Working Group 8098d23f2c7e0a7254a2d573249f4dbd https://www.encodeproject.org/files/ENCFF002DCA/@@download/ENCFF002DCA.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF799KMW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCA 1974593 ENCODE Consortium 417cb74aa33d245681b01d430b54b4ec https://www.encodeproject.org/files/ENCFF799KMW/@@download/ENCFF799KMW.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF277LMD bam unfiltered alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYV, ENCFF643CGH 424224174 ENCODE Processing Pipeline 72404db620f1072d74ab307270345992 https://www.encodeproject.org/files/ENCFF277LMD/@@download/ENCFF277LMD.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF887VLI bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYV, ENCFF643CGH 292554722 ENCODE Processing Pipeline b16c22ae2e6c80ad799a48fe1a16916f https://www.encodeproject.org/files/ENCFF887VLI/@@download/ENCFF887VLI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF754FZR bam unfiltered alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYX, ENCFF643CGH 1586342398 ENCODE Processing Pipeline fee70f225d2733fc41fcfb13f16aff04 https://www.encodeproject.org/files/ENCFF754FZR/@@download/ENCFF754FZR.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF971QGY bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYX, ENCFF643CGH 1038867562 ENCODE Processing Pipeline 3a4dbe346ccfca984b17fdda6d2e6bda https://www.encodeproject.org/files/ENCFF971QGY/@@download/ENCFF971QGY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF772BCU bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYV, ENCFF807MUK 292749452 ENCODE Processing Pipeline 70bca105a16ff353dec17e9df49409ea https://www.encodeproject.org/files/ENCFF772BCU/@@download/ENCFF772BCU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF174BUL bam unfiltered alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYV, ENCFF807MUK 422978429 ENCODE Processing Pipeline f1fde4b3b56fd44dfb3285fe29c6a980 https://www.encodeproject.org/files/ENCFF174BUL/@@download/ENCFF174BUL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF281JOP bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYX, ENCFF807MUK 1039218700 ENCODE Processing Pipeline 681b71a3993f30578636740a9a19b141 https://www.encodeproject.org/files/ENCFF281JOP/@@download/ENCFF281JOP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF402OYG bam unfiltered alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYX, ENCFF807MUK 1579117661 ENCODE Processing Pipeline 5eb70900a10d66c6210fbc6f192cec27 https://www.encodeproject.org/files/ENCFF402OYG/@@download/ENCFF402OYG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF944LSK bigWig signal p-value ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF436GDS, ENCFF887VLI 329308973 ENCODE Processing Pipeline a95300fe9393b19e8ff9d96d0bb20c01 https://www.encodeproject.org/files/ENCFF944LSK/@@download/ENCFF944LSK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF468JFJ bigWig fold change over control ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF436GDS, ENCFF887VLI 137871234 ENCODE Processing Pipeline 84486f360d8dcc2d1c45faccd2a98d91 https://www.encodeproject.org/files/ENCFF468JFJ/@@download/ENCFF468JFJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF979PHF bigWig signal p-value ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF436GDS, ENCFF971QGY 451893175 ENCODE Processing Pipeline 6bfeba6b84212038888431a977bfb794 https://www.encodeproject.org/files/ENCFF979PHF/@@download/ENCFF979PHF.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF232KZO bigWig signal p-value ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF436GDS, ENCFF887VLI, ENCFF971QGY 460182459 ENCODE Processing Pipeline 71cfddb3097758118b9edb1405257ca9 https://www.encodeproject.org/files/ENCFF232KZO/@@download/ENCFF232KZO.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF869IKP bigWig fold change over control ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF436GDS, ENCFF971QGY 413623992 ENCODE Processing Pipeline 0d1442573d70591c9dbf633fa933999b https://www.encodeproject.org/files/ENCFF869IKP/@@download/ENCFF869IKP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF475VZY bigWig fold change over control ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF436GDS, ENCFF887VLI, ENCFF971QGY 506009074 ENCODE Processing Pipeline 68f5d759064361438fc650bd0193fe20 https://www.encodeproject.org/files/ENCFF475VZY/@@download/ENCFF475VZY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF387TDH bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF436GDS, ENCFF971QGY 4319813 ENCODE Processing Pipeline 903d52e89dd419f67cf73a65691e49b9 https://www.encodeproject.org/files/ENCFF387TDH/@@download/ENCFF387TDH.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF348AGS bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF436GDS, ENCFF887VLI, ENCFF971QGY 2908153 ENCODE Processing Pipeline 6cee9b177400c2f339ddf2626ba86f6c https://www.encodeproject.org/files/ENCFF348AGS/@@download/ENCFF348AGS.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF107LKZ bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF436GDS, ENCFF887VLI 2235869 ENCODE Processing Pipeline 2a15d800eaa4e8ea0ec40409b731e170 https://www.encodeproject.org/files/ENCFF107LKZ/@@download/ENCFF107LKZ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF368TRA bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF387TDH 10978980 ENCODE Processing Pipeline 4ab71d67a28c9408d2e982bcaf6b92ea https://www.encodeproject.org/files/ENCFF368TRA/@@download/ENCFF368TRA.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF432UBB bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF348AGS 7105158 ENCODE Processing Pipeline 5f698926a23a841f362497548be94f72 https://www.encodeproject.org/files/ENCFF432UBB/@@download/ENCFF432UBB.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF322FBH bed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF107LKZ, ENCFF348AGS, ENCFF387TDH, ENCFF419RSJ 782218 ENCODE Processing Pipeline d4def5129c79482333e8df8a68d6acd4 https://www.encodeproject.org/files/ENCFF322FBH/@@download/ENCFF322FBH.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF751NQH bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF107LKZ 4834165 ENCODE Processing Pipeline d2bc93f4da073839289661dea13ae157 https://www.encodeproject.org/files/ENCFF751NQH/@@download/ENCFF751NQH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF351BTU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF715GFM 1316300 ENCODE Processing Pipeline 9d7a285ed68195c22d9c26a96371fd0b https://www.encodeproject.org/files/ENCFF351BTU/@@download/ENCFF351BTU.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF715GFM bed narrowPeak conservative idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF107LKZ, ENCFF348AGS, ENCFF387TDH, ENCFF419RSJ 710142 ENCODE Processing Pipeline 17f451211b4c7162036c1275e0cac1a8 https://www.encodeproject.org/files/ENCFF715GFM/@@download/ENCFF715GFM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF687GSH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF322FBH 1415834 ENCODE Processing Pipeline 0cc16e1c469b8849176b5893245ad0a8 https://www.encodeproject.org/files/ENCFF687GSH/@@download/ENCFF687GSH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF367DII bigWig signal p-value ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF281JOP, ENCFF972ATQ 452235310 ENCODE Processing Pipeline b9cc73bf0fe23ab9792f047b8687541e https://www.encodeproject.org/files/ENCFF367DII/@@download/ENCFF367DII.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF241LIY bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF281JOP, ENCFF972ATQ 4309365 ENCODE Processing Pipeline 2e3c84a3715912d9ca749147da1895bd https://www.encodeproject.org/files/ENCFF241LIY/@@download/ENCFF241LIY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF672NNP bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF567GAL 7110863 ENCODE Processing Pipeline f4967839dc9e0eff7a90bdf27fa878e6 https://www.encodeproject.org/files/ENCFF672NNP/@@download/ENCFF672NNP.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF190KCG bigWig signal p-value ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF281JOP, ENCFF772BCU, ENCFF972ATQ 460374490 ENCODE Processing Pipeline e990430acb3a6297b8f41f66735a67cd https://www.encodeproject.org/files/ENCFF190KCG/@@download/ENCFF190KCG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF992PAM bigWig fold change over control ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF281JOP, ENCFF772BCU, ENCFF972ATQ 501004415 ENCODE Processing Pipeline 62c47de1d69cbd6bd05023fe4ed63111 https://www.encodeproject.org/files/ENCFF992PAM/@@download/ENCFF992PAM.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF677LGL bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF241LIY 10953962 ENCODE Processing Pipeline b111fbe8f6fd3ae4c01ea86ca35d1f99 https://www.encodeproject.org/files/ENCFF677LGL/@@download/ENCFF677LGL.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF179ZJI bigWig signal p-value ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF772BCU, ENCFF972ATQ 331510817 ENCODE Processing Pipeline 1031703d04682a6ac19ee11c529b6056 https://www.encodeproject.org/files/ENCFF179ZJI/@@download/ENCFF179ZJI.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF774ZXE bigWig fold change over control ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF772BCU, ENCFF972ATQ 137202326 ENCODE Processing Pipeline 98b8e471b14d0a68a543d6fca5da9714 https://www.encodeproject.org/files/ENCFF774ZXE/@@download/ENCFF774ZXE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF534IZL bigWig fold change over control ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF281JOP, ENCFF972ATQ 416353603 ENCODE Processing Pipeline e9f71cdca87fcbcbdeaba4581b1a477d https://www.encodeproject.org/files/ENCFF534IZL/@@download/ENCFF534IZL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF663EZM bigBed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF005RNW 4839064 ENCODE Processing Pipeline 3fd2ffab9dcef2ae00e93d42d850ad95 https://www.encodeproject.org/files/ENCFF663EZM/@@download/ENCFF663EZM.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF005RNW bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF772BCU, ENCFF972ATQ 2238862 ENCODE Processing Pipeline 5b3497b5bd24d11f6712be57a28178c5 https://www.encodeproject.org/files/ENCFF005RNW/@@download/ENCFF005RNW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF567GAL bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF281JOP, ENCFF772BCU, ENCFF972ATQ 2913447 ENCODE Processing Pipeline 91b5f5a6af5d2d08a88b08810c7a2280 https://www.encodeproject.org/files/ENCFF567GAL/@@download/ENCFF567GAL.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF337GZT bed narrowPeak conservative idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF005RNW, ENCFF241LIY, ENCFF567GAL 709373 ENCODE Processing Pipeline 597481c7443b77d022cb769eb0a0bb45 https://www.encodeproject.org/files/ENCFF337GZT/@@download/ENCFF337GZT.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF264KRI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF337GZT 1315567 ENCODE Processing Pipeline 4349ac134dde45e611ee133cccc9c865 https://www.encodeproject.org/files/ENCFF264KRI/@@download/ENCFF264KRI.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF859PRV bed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF005RNW, ENCFF241LIY, ENCFF567GAL 779989 ENCODE Processing Pipeline 43616394b9f92fa49f35482cff6b7155 https://www.encodeproject.org/files/ENCFF859PRV/@@download/ENCFF859PRV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF011DJC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF859PRV 1412782 ENCODE Processing Pipeline d865ffe4dad8548df2b97bcc18804529 https://www.encodeproject.org/files/ENCFF011DJC/@@download/ENCFF011DJC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000WJH bam alignments ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WJR 407583718 Michael Snyder, Stanford 825f4fd0307d9645eef6902741460f3e https://www.encodeproject.org/files/ENCFF000WJH/@@download/ENCFF000WJH.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJI bam alignments ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WJY 546694790 Michael Snyder, Stanford a348bdaff509041b48c84880dda55374 https://www.encodeproject.org/files/ENCFF000WJI/@@download/ENCFF000WJI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJJ bam alignments ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WJQ 242380028 Michael Snyder, Stanford 07589049f9e3994361c1a6bf9920aa3d https://www.encodeproject.org/files/ENCFF000WJJ/@@download/ENCFF000WJJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJK bigBed narrowPeak peaks ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGA 684528 Michael Snyder, Stanford d55ff7f1e133461deb66222cee5bafd1 https://www.encodeproject.org/files/ENCFF000WJK/@@download/ENCFF000WJK.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJO bigWig signal ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 315198295 Michael Snyder, Stanford f23b66f5b5c626e8be3b4dc4167d06b3 https://www.encodeproject.org/files/ENCFF000WJO/@@download/ENCFF000WJO.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WJQ fastq reads ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 198205258 Michael Snyder, Stanford a7ca7ccbe8864118ba600124b12a5653 https://www.encodeproject.org/files/ENCFF000WJQ/@@download/ENCFF000WJQ.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WJR fastq reads ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 308901662 Michael Snyder, Stanford 188bf65572172447a0edbe666995330d https://www.encodeproject.org/files/ENCFF000WJR/@@download/ENCFF000WJR.fastq.gz Illumina Genome Analyzer /files/ENCFF000WIQ/ released biological replicates with identical biosample insufficient read length ENCFF000WJY fastq reads ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 428803677 Michael Snyder, Stanford db9872b87ad81bcf36ce42e21edea356 https://www.encodeproject.org/files/ENCFF000WJY/@@download/ENCFF000WJY.fastq.gz Illumina Genome Analyzer /files/ENCFF000WIX/ released biological replicates with identical biosample insufficient read length ENCFF001VGA bed narrowPeak peaks ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 286074 Michael Snyder, Stanford 2e32ebab0453efd443c07b09072829e1 https://www.encodeproject.org/files/ENCFF001VGA/@@download/ENCFF001VGA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CQC bed narrowPeak optimal idr thresholded peaks ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 494599 ENCODE Consortium Analysis Working Group a6e63251020b5a5036e549563125682f https://www.encodeproject.org/files/ENCFF002CQC/@@download/ENCFF002CQC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF034AWN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQC 1378030 ENCODE Consortium e5c672e15a700a4c0d1c3417e34012a7 https://www.encodeproject.org/files/ENCFF034AWN/@@download/ENCFF034AWN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000OMM bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OMV 421032401 Richard Myers, HAIB 9f1ed45350180b894e447b6c330771bf https://www.encodeproject.org/files/ENCFF000OMM/@@download/ENCFF000OMM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000OMN bigBed broadPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAU 108724 Richard Myers, HAIB 234dafe246937401b01de58ab5fb8534 https://www.encodeproject.org/files/ENCFF000OMN/@@download/ENCFF000OMN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000OMO bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OMW 610196924 Richard Myers, HAIB f35299424dc7c3ea562dd19555e43dbc https://www.encodeproject.org/files/ENCFF000OMO/@@download/ENCFF000OMO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000OMP bigBed broadPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAV 146053 Richard Myers, HAIB f868ff65e3cd09572fd2c081ebea5753 https://www.encodeproject.org/files/ENCFF000OMP/@@download/ENCFF000OMP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000OMQ bigWig raw signal ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 2508789 Richard Myers, HAIB cd13ac28c49117cbf64929824369f79a https://www.encodeproject.org/files/ENCFF000OMQ/@@download/ENCFF000OMQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OMS bigWig raw signal ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 1898727 Richard Myers, HAIB 0d07e88b5da432cdaf92244d17eee7e0 https://www.encodeproject.org/files/ENCFF000OMS/@@download/ENCFF000OMS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000OMV fastq reads ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 330639256 Richard Myers, HAIB 07bf8e5e1b2469d10e60ac8d116c5c5c https://www.encodeproject.org/files/ENCFF000OMV/@@download/ENCFF000OMV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000OMW fastq reads ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 510222307 Richard Myers, HAIB 2b5a5c27c0008c8474a1d339ca0b535f https://www.encodeproject.org/files/ENCFF000OMW/@@download/ENCFF000OMW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF001UAU bed broadPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 43192 Richard Myers, HAIB 755b803948cdfee5906b178ea5ee7534 https://www.encodeproject.org/files/ENCFF001UAU/@@download/ENCFF001UAU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UAV bed broadPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 51161 Richard Myers, HAIB 9e21f6b00d719592a4175ecc1b9527f6 https://www.encodeproject.org/files/ENCFF001UAV/@@download/ENCFF001UAV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CIS bed narrowPeak optimal idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 127804 ENCODE Consortium Analysis Working Group ab173430c407cd66ebbf7626586208a7 https://www.encodeproject.org/files/ENCFF002CIS/@@download/ENCFF002CIS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF294BBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIS 345172 ENCODE Consortium be863468b42b7c52ce43be024d4149d5 https://www.encodeproject.org/files/ENCFF294BBQ/@@download/ENCFF294BBQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF108CBZ bam unfiltered alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OMV, ENCFF643CGH 501405220 ENCODE Processing Pipeline 73d42a39c86e03e2d09d2665996b6f45 https://www.encodeproject.org/files/ENCFF108CBZ/@@download/ENCFF108CBZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF712JVJ bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OMV, ENCFF643CGH 301598600 ENCODE Processing Pipeline 75da9772f1ff33b07e9dc04a23fb8200 https://www.encodeproject.org/files/ENCFF712JVJ/@@download/ENCFF712JVJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF641XBG bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMW, ENCFF643CGH 416855692 ENCODE Processing Pipeline 34dc5526bf5cf0d34c4cb9eb792464ed https://www.encodeproject.org/files/ENCFF641XBG/@@download/ENCFF641XBG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF122CVO bam unfiltered alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMW, ENCFF643CGH 712468092 ENCODE Processing Pipeline ca2f9e317b7e1882b2a65b1b6ffa92b3 https://www.encodeproject.org/files/ENCFF122CVO/@@download/ENCFF122CVO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF650JTM bam unfiltered alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OMV, ENCFF807MUK 499849644 ENCODE Processing Pipeline 1f289c7501b6f2d1577c98b106b14d1f https://www.encodeproject.org/files/ENCFF650JTM/@@download/ENCFF650JTM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF117FPW bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OMV, ENCFF807MUK 301779720 ENCODE Processing Pipeline 6a79367406bc2da08e03e61ed9fd707a https://www.encodeproject.org/files/ENCFF117FPW/@@download/ENCFF117FPW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF266SYC bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMW, ENCFF807MUK 417140336 ENCODE Processing Pipeline 84c3f490633ad3f3059cc905139bc43e https://www.encodeproject.org/files/ENCFF266SYC/@@download/ENCFF266SYC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF107BHO bam unfiltered alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMW, ENCFF807MUK 709576976 ENCODE Processing Pipeline 6cbbba6a06fdade6290e9b86e299e9a0 https://www.encodeproject.org/files/ENCFF107BHO/@@download/ENCFF107BHO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF327URG bigWig signal p-value ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712JVJ, ENCFF948LKH 408481321 ENCODE Processing Pipeline 31e3854a7d20dfd4fa0328053fe76f54 https://www.encodeproject.org/files/ENCFF327URG/@@download/ENCFF327URG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF413UNQ bigWig signal p-value ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF641XBG, ENCFF948LKH 429305230 ENCODE Processing Pipeline 9e9f4c65c3ea5cf12a936fd569f72e35 https://www.encodeproject.org/files/ENCFF413UNQ/@@download/ENCFF413UNQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF541CNZ bigWig signal p-value ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF641XBG, ENCFF712JVJ, ENCFF948LKH 548429224 ENCODE Processing Pipeline 7407239305791ef17997bd6ea121415a https://www.encodeproject.org/files/ENCFF541CNZ/@@download/ENCFF541CNZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF767IYZ bigWig fold change over control ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF641XBG, ENCFF948LKH 271892238 ENCODE Processing Pipeline 62ed63fcac95b4512828ee12e7512473 https://www.encodeproject.org/files/ENCFF767IYZ/@@download/ENCFF767IYZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF481EHX bigWig fold change over control ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF641XBG, ENCFF712JVJ, ENCFF948LKH 411081474 ENCODE Processing Pipeline 9e11a2ccde930f2276ffc4d3faff0381 https://www.encodeproject.org/files/ENCFF481EHX/@@download/ENCFF481EHX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF173PEI bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF641XBG, ENCFF948LKH 3720308 ENCODE Processing Pipeline b4071f8709b73fcf68d85ecf086999e1 https://www.encodeproject.org/files/ENCFF173PEI/@@download/ENCFF173PEI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF889EVL bigWig fold change over control ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712JVJ, ENCFF948LKH 217173094 ENCODE Processing Pipeline 81cc1e87244ca1e1693654a4a470169a https://www.encodeproject.org/files/ENCFF889EVL/@@download/ENCFF889EVL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF627PAL bigBed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF791JSM 10986381 ENCODE Processing Pipeline 16d7e5113c783818a76cde777a514f53 https://www.encodeproject.org/files/ENCFF627PAL/@@download/ENCFF627PAL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF784OGS bigBed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF078BQQ 10217023 ENCODE Processing Pipeline 3a53d6fd5392cccc6dca389cab149d78 https://www.encodeproject.org/files/ENCFF784OGS/@@download/ENCFF784OGS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF078BQQ bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712JVJ, ENCFF948LKH 4040577 ENCODE Processing Pipeline 08e2b1edd433e4178ef354cbb8c1f8b6 https://www.encodeproject.org/files/ENCFF078BQQ/@@download/ENCFF078BQQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF791JSM bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF641XBG, ENCFF712JVJ, ENCFF948LKH 4456184 ENCODE Processing Pipeline 47c42822d5658b7a5dfe11fa9893fa02 https://www.encodeproject.org/files/ENCFF791JSM/@@download/ENCFF791JSM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF912WVM bigBed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF173PEI 8014935 ENCODE Processing Pipeline 191a941c88de19691ed20afdb628b3a1 https://www.encodeproject.org/files/ENCFF912WVM/@@download/ENCFF912WVM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF515HFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF613DVF 206080 ENCODE Processing Pipeline 44d5cd8ea61e1224ab6d9bc450103b37 https://www.encodeproject.org/files/ENCFF515HFN/@@download/ENCFF515HFN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF613DVF bed narrowPeak conservative idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF078BQQ, ENCFF173PEI, ENCFF419RSJ, ENCFF791JSM 85522 ENCODE Processing Pipeline 48c5dd1e43b41ce036e9edcab41650c5 https://www.encodeproject.org/files/ENCFF613DVF/@@download/ENCFF613DVF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF487GLV bed narrowPeak optimal idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF078BQQ, ENCFF173PEI, ENCFF419RSJ, ENCFF791JSM 95778 ENCODE Processing Pipeline 12425177b305e4d7671fca9031627a72 https://www.encodeproject.org/files/ENCFF487GLV/@@download/ENCFF487GLV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF207AVV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF487GLV 221182 ENCODE Processing Pipeline 1c3b05dc018da94ec0261cd1b15552fc https://www.encodeproject.org/files/ENCFF207AVV/@@download/ENCFF207AVV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF659ZFB bigWig signal p-value ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266SYC, ENCFF356DXM 372534234 ENCODE Processing Pipeline d7bab36b8450133063db926b3a098854 https://www.encodeproject.org/files/ENCFF659ZFB/@@download/ENCFF659ZFB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF874WRD bigWig fold change over control ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266SYC, ENCFF356DXM 273141706 ENCODE Processing Pipeline c79e985b4c41d231e904e55e3e6ce2b7 https://www.encodeproject.org/files/ENCFF874WRD/@@download/ENCFF874WRD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF247QAA bigWig signal p-value ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117FPW, ENCFF356DXM 374366996 ENCODE Processing Pipeline 995369e3ce20c43eb1ebc23097e332f6 https://www.encodeproject.org/files/ENCFF247QAA/@@download/ENCFF247QAA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF953TSO bigWig fold change over control ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117FPW, ENCFF266SYC, ENCFF356DXM 416542416 ENCODE Processing Pipeline 12c0c2967c5dcba2ba83b3e0b164d84e https://www.encodeproject.org/files/ENCFF953TSO/@@download/ENCFF953TSO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF839EZQ bigWig fold change over control ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117FPW, ENCFF356DXM 219124228 ENCODE Processing Pipeline f817efd28fd5c281e4af4d3248953454 https://www.encodeproject.org/files/ENCFF839EZQ/@@download/ENCFF839EZQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF821DLT bigWig signal p-value ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117FPW, ENCFF266SYC, ENCFF356DXM 440486943 ENCODE Processing Pipeline b1ebe364ab36298e009b42eecb684d97 https://www.encodeproject.org/files/ENCFF821DLT/@@download/ENCFF821DLT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF067KOU bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117FPW, ENCFF266SYC, ENCFF356DXM 4483594 ENCODE Processing Pipeline 21402bae59260d52a24d2e833c7d7b25 https://www.encodeproject.org/files/ENCFF067KOU/@@download/ENCFF067KOU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF941VJS bigBed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF450PVT 10303769 ENCODE Processing Pipeline 5bc41c8862e6cdfab49925b2971e1b21 https://www.encodeproject.org/files/ENCFF941VJS/@@download/ENCFF941VJS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF616DKI bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266SYC, ENCFF356DXM 3722292 ENCODE Processing Pipeline b23cad7158e5e40098e9c7d27a184636 https://www.encodeproject.org/files/ENCFF616DKI/@@download/ENCFF616DKI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF450PVT bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117FPW, ENCFF356DXM 4093263 ENCODE Processing Pipeline 070b4b558160195a7d0f3ab27ce29f9d https://www.encodeproject.org/files/ENCFF450PVT/@@download/ENCFF450PVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF390LFB bed narrowPeak conservative idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF067KOU, ENCFF450PVT, ENCFF616DKI 83299 ENCODE Processing Pipeline edd837abe6f182a089c9ddd32e4bafac https://www.encodeproject.org/files/ENCFF390LFB/@@download/ENCFF390LFB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF305HBV bed narrowPeak optimal idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF067KOU, ENCFF450PVT, ENCFF616DKI 92829 ENCODE Processing Pipeline 742a86a42182a571b8d1fb3cf02d9b7b https://www.encodeproject.org/files/ENCFF305HBV/@@download/ENCFF305HBV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF668VOV bigBed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF616DKI 8017641 ENCODE Processing Pipeline 0507ccf20933653fed280171c53a4df7 https://www.encodeproject.org/files/ENCFF668VOV/@@download/ENCFF668VOV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF947URX bigBed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067KOU 10979752 ENCODE Processing Pipeline 748c89e8914e408f2525eb2b537f0308 https://www.encodeproject.org/files/ENCFF947URX/@@download/ENCFF947URX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF280JSF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF390LFB 201600 ENCODE Processing Pipeline 8d7f6b2a3b23f379e5aef5bb757c1bc4 https://www.encodeproject.org/files/ENCFF280JSF/@@download/ENCFF280JSF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF154NGN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305HBV 216101 ENCODE Processing Pipeline 7fb410abc51cff6a6343ea30bdcf3786 https://www.encodeproject.org/files/ENCFF154NGN/@@download/ENCFF154NGN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000YWP bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXO 662094648 Michael Snyder, Stanford 32f6540534a99567d1e1f39b19563d43 https://www.encodeproject.org/files/ENCFF000YWP/@@download/ENCFF000YWP.bam hg19 archived inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWQ bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOH 339682 Michael Snyder, Stanford 1cf5b48444227aaf09278489915f0ce9 https://www.encodeproject.org/files/ENCFF000YWQ/@@download/ENCFF000YWQ.bigBed hg19 archived inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWR bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YXN 719521652 Michael Snyder, Stanford b5ac38c666ec74ef91c8d1c8f14aff9f https://www.encodeproject.org/files/ENCFF000YWR/@@download/ENCFF000YWR.bam hg19 archived inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWS bigWig signal ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 348117284 Michael Snyder, Stanford 827b59c5dfc3aaf3ad912b89060748e8 https://www.encodeproject.org/files/ENCFF000YWS/@@download/ENCFF000YWS.bigWig hg19 archived inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000YXN fastq reads ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 551576863 Michael Snyder, Stanford dc7255a29ff2a38a6d9bafd6c858d71e https://www.encodeproject.org/files/ENCFF000YXN/@@download/ENCFF000YXN.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YXO fastq reads ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 505279803 Michael Snyder, Stanford cf1119371807c0eb9add16373a637d9f https://www.encodeproject.org/files/ENCFF000YXO/@@download/ENCFF000YXO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOH bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 112755 Michael Snyder, Stanford e878710ad764502ef990eeff2524a04a https://www.encodeproject.org/files/ENCFF001VOH/@@download/ENCFF001VOH.bed.gz hg19 archived inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CXQ bed narrowPeak optimal idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 201419 ENCODE Consortium Analysis Working Group 084ad0406460e0147c0920c7d6ee0855 https://www.encodeproject.org/files/ENCFF002CXQ/@@download/ENCFF002CXQ.bed.gz hg19 archived inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF735GTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXQ 503641 ENCODE Consortium aba365c40e782385ae6568ee5ba1fa22 https://www.encodeproject.org/files/ENCFF735GTI/@@download/ENCFF735GTI.bigBed hg19 archived inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF496HBX bam unfiltered alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YXN, ENCFF643CGH 721397409 ENCODE Processing Pipeline 95763edcb20e46f99b70183f66f30d6b https://www.encodeproject.org/files/ENCFF496HBX/@@download/ENCFF496HBX.bam GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF333ESU bam unfiltered alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YXO, ENCFF643CGH 663863362 ENCODE Processing Pipeline 04d136ae631e076f3a415d0f3ae37030 https://www.encodeproject.org/files/ENCFF333ESU/@@download/ENCFF333ESU.bam GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF185VII bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YXN, ENCFF643CGH 338082963 ENCODE Processing Pipeline 4a8a8381e0914e1eb1fe8db9199b6771 https://www.encodeproject.org/files/ENCFF185VII/@@download/ENCFF185VII.bam GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF658FLY bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YXO, ENCFF643CGH 318926088 ENCODE Processing Pipeline 6fcd38f28253a3831d846959d5c4a055 https://www.encodeproject.org/files/ENCFF658FLY/@@download/ENCFF658FLY.bam GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF699LQL bam unfiltered alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YXN, ENCFF807MUK 720252911 ENCODE Processing Pipeline d4c1dfa7d87ba3b6682576e8a9a70dfb https://www.encodeproject.org/files/ENCFF699LQL/@@download/ENCFF699LQL.bam hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF318TVO bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YXN, ENCFF807MUK 338404825 ENCODE Processing Pipeline 2d669697d9a2cccdcba5cd1b27142660 https://www.encodeproject.org/files/ENCFF318TVO/@@download/ENCFF318TVO.bam hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF740JQR bam unfiltered alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YXO, ENCFF807MUK 662771466 ENCODE Processing Pipeline 14b46ee1254032aa60a4ea64c47291bb https://www.encodeproject.org/files/ENCFF740JQR/@@download/ENCFF740JQR.bam hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF371LNT bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YXO, ENCFF807MUK 319233695 ENCODE Processing Pipeline ae5ae9e30fb3b363871bff74ffada4dc https://www.encodeproject.org/files/ENCFF371LNT/@@download/ENCFF371LNT.bam hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF278KVO bed narrowPeak conservative idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF311JHD, ENCFF538LJI, ENCFF548UHR 219449 ENCODE Processing Pipeline 6bb8d993ac0e9c6b3d69894ae17164ee https://www.encodeproject.org/files/ENCFF278KVO/@@download/ENCFF278KVO.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF574JJT bigWig signal p-value ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF318TVO, ENCFF498SAC 280314086 ENCODE Processing Pipeline edfd5a8b266c02970457def56d2dfe20 https://www.encodeproject.org/files/ENCFF574JJT/@@download/ENCFF574JJT.bigWig hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF311JHD bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF371LNT, ENCFF732TLR 5548569 ENCODE Processing Pipeline d5c14559ee0dae972ab69cce08e29c20 https://www.encodeproject.org/files/ENCFF311JHD/@@download/ENCFF311JHD.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF154DDO bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF311JHD 12221994 ENCODE Processing Pipeline 253476a47c085272cb1c35bdaeb4f384 https://www.encodeproject.org/files/ENCFF154DDO/@@download/ENCFF154DDO.bigBed hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF535LSJ bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF538LJI 12216522 ENCODE Processing Pipeline f9b43aa4b93ec6a0344426b8970a6185 https://www.encodeproject.org/files/ENCFF535LSJ/@@download/ENCFF535LSJ.bigBed hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF284SOH bigWig signal p-value ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF371LNT, ENCFF732TLR 231570918 ENCODE Processing Pipeline 55cfb4d38c4bb301d07ac6df586353ba https://www.encodeproject.org/files/ENCFF284SOH/@@download/ENCFF284SOH.bigWig hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF886MYL bigWig fold change over control ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF318TVO, ENCFF498SAC 153397333 ENCODE Processing Pipeline 814d8a46416e7bdb3ca24fdc54d37727 https://www.encodeproject.org/files/ENCFF886MYL/@@download/ENCFF886MYL.bigWig hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF243VEK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278KVO 452347 ENCODE Processing Pipeline 9ca7287159aac941506e4849c07c6263 https://www.encodeproject.org/files/ENCFF243VEK/@@download/ENCFF243VEK.bigBed hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF052NEG bigWig fold change over control ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF371LNT, ENCFF732TLR 141679405 ENCODE Processing Pipeline b48a8a1e7c7c1fb9552a55941970b1f0 https://www.encodeproject.org/files/ENCFF052NEG/@@download/ENCFF052NEG.bigWig hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF552VTT bigWig fold change over control ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318TVO, ENCFF371LNT, ENCFF498SAC, ENCFF732TLR 331794022 ENCODE Processing Pipeline b5cd3fef20812b5fee606e2579b24409 https://www.encodeproject.org/files/ENCFF552VTT/@@download/ENCFF552VTT.bigWig hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF548UHR bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318TVO, ENCFF371LNT, ENCFF498SAC, ENCFF732TLR 6615743 ENCODE Processing Pipeline 312d75470686acbed2573f95ac1a663b https://www.encodeproject.org/files/ENCFF548UHR/@@download/ENCFF548UHR.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF954FLD bigWig signal p-value ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF185VII 217803722 ENCODE Processing Pipeline c6fc12325858de1c3c609b76b1468b79 https://www.encodeproject.org/files/ENCFF954FLD/@@download/ENCFF954FLD.bigWig GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF603ASW bigWig signal p-value ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318TVO, ENCFF371LNT, ENCFF498SAC, ENCFF732TLR 359399845 ENCODE Processing Pipeline bd587ca3770b9d04acb55f8c694b80b2 https://www.encodeproject.org/files/ENCFF603ASW/@@download/ENCFF603ASW.bigWig hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF538LJI bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF318TVO, ENCFF498SAC 5450249 ENCODE Processing Pipeline 644f9f0d26d1a0e6f7b8a2e09282df2b https://www.encodeproject.org/files/ENCFF538LJI/@@download/ENCFF538LJI.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF662XQF bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548UHR 12358847 ENCODE Processing Pipeline 93bb5998c1e0c54e39b9ab9ca20a3f94 https://www.encodeproject.org/files/ENCFF662XQF/@@download/ENCFF662XQF.bigBed hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF394LOQ bed narrowPeak optimal idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF311JHD, ENCFF538LJI, ENCFF548UHR 233885 ENCODE Processing Pipeline f68323c451656aa98cda4989cef2e027 https://www.encodeproject.org/files/ENCFF394LOQ/@@download/ENCFF394LOQ.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF752QXU bigWig signal p-value ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156NSV, ENCFF185VII, ENCFF658FLY, ENCFF715JBE 466339697 ENCODE Processing Pipeline 2bce6d36e58cb29e07c08a5af1b90bb9 https://www.encodeproject.org/files/ENCFF752QXU/@@download/ENCFF752QXU.bigWig GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF425WGA bigWig signal p-value ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF658FLY, ENCFF715JBE 251820836 ENCODE Processing Pipeline d3082c9ee05d7950126d0ec757ccb9d3 https://www.encodeproject.org/files/ENCFF425WGA/@@download/ENCFF425WGA.bigWig GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF158ULP bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF658FLY, ENCFF715JBE 5548237 ENCODE Processing Pipeline c2dd1f4462c5a42d1474921b073eb128 https://www.encodeproject.org/files/ENCFF158ULP/@@download/ENCFF158ULP.bed.gz GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF736OUD bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF869HCI 12367091 ENCODE Processing Pipeline e5eef12b6d4f9baea9ea48fb286ded6b https://www.encodeproject.org/files/ENCFF736OUD/@@download/ENCFF736OUD.bigBed GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF887PRI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF394LOQ 475900 ENCODE Processing Pipeline 7f3971da24ae30e0051ecb9de263cad6 https://www.encodeproject.org/files/ENCFF887PRI/@@download/ENCFF887PRI.bigBed hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF869HCI bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156NSV, ENCFF185VII, ENCFF658FLY, ENCFF715JBE 6590662 ENCODE Processing Pipeline 567a35e6395de6404ecaec5825dde06a https://www.encodeproject.org/files/ENCFF869HCI/@@download/ENCFF869HCI.bed.gz GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF904ULT bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF484AIQ 12185231 ENCODE Processing Pipeline 30ee6e49a66fe29ec97b9651f48f17d2 https://www.encodeproject.org/files/ENCFF904ULT/@@download/ENCFF904ULT.bigBed GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF883RUO bigWig fold change over control ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF658FLY, ENCFF715JBE 145676227 ENCODE Processing Pipeline df6f9a3aed160568ae72ef5f7253cf48 https://www.encodeproject.org/files/ENCFF883RUO/@@download/ENCFF883RUO.bigWig GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF585CJK bigWig fold change over control ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF185VII 154337356 ENCODE Processing Pipeline 64622df47e98a2b57a312531d71b9c20 https://www.encodeproject.org/files/ENCFF585CJK/@@download/ENCFF585CJK.bigWig GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF484AIQ bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF185VII 5463371 ENCODE Processing Pipeline 3c84a4066ebcfbdc2e76db045c4eaabf https://www.encodeproject.org/files/ENCFF484AIQ/@@download/ENCFF484AIQ.bed.gz GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF597CEP bigWig fold change over control ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156NSV, ENCFF185VII, ENCFF658FLY, ENCFF715JBE 329171823 ENCODE Processing Pipeline c4cb81ec20a9dbcc93be3efe87d73e78 https://www.encodeproject.org/files/ENCFF597CEP/@@download/ENCFF597CEP.bigWig GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF203WMU bigBed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF158ULP 12213973 ENCODE Processing Pipeline c2f8958e6ccca6b0ed0a9e2562cd66ca https://www.encodeproject.org/files/ENCFF203WMU/@@download/ENCFF203WMU.bigBed GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF386RFD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF375FRM 449480 ENCODE Processing Pipeline 0a51b39b62bbd6366a640049faa3312f https://www.encodeproject.org/files/ENCFF386RFD/@@download/ENCFF386RFD.bigBed GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF741JES bed narrowPeak optimal idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF158ULP, ENCFF419RSJ, ENCFF484AIQ, ENCFF869HCI 244175 ENCODE Processing Pipeline b037ddb38486dcbd9735cb77b8861b19 https://www.encodeproject.org/files/ENCFF741JES/@@download/ENCFF741JES.bed.gz GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF179KNP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF741JES 489988 ENCODE Processing Pipeline 9a9cbccfcaa627b65caf20f3c89aac3e https://www.encodeproject.org/files/ENCFF179KNP/@@download/ENCFF179KNP.bigBed GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF375FRM bed narrowPeak conservative idr thresholded peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF158ULP, ENCFF419RSJ, ENCFF484AIQ, ENCFF869HCI 217025 ENCODE Processing Pipeline f7e759933cd01838ed2702a7358ebc4d https://www.encodeproject.org/files/ENCFF375FRM/@@download/ENCFF375FRM.bed.gz GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YDF bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VLR 937280 Michael Snyder, Stanford 028f7b77d717a40ea62d5f7a8c0448ac https://www.encodeproject.org/files/ENCFF000YDF/@@download/ENCFF000YDF.bigBed hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000YDG fastq reads ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1163217545 Michael Snyder, Stanford 468b2af38fa1f84146b07b395b0ea598 https://www.encodeproject.org/files/ENCFF000YDG/@@download/ENCFF000YDG.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCQ/ released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000YDI fastq reads ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1038793949 Michael Snyder, Stanford ab271c910d7309934edddd67194f0cc8 https://www.encodeproject.org/files/ENCFF000YDI/@@download/ENCFF000YDI.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCS/ released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000YDK bigWig signal ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 472257281 Michael Snyder, Stanford 60acd1a04a4b699c1376e2923500f376 https://www.encodeproject.org/files/ENCFF000YDK/@@download/ENCFF000YDK.bigWig hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000YDL bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 1 531379851 Michael Snyder, Stanford 49982b85f7023c7acaa3179d2f77e669 https://www.encodeproject.org/files/ENCFF000YDL/@@download/ENCFF000YDL.bam hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000YDM bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 1 542855076 Michael Snyder, Stanford 6003e63a5c8e7f722868af9fd6c2b098 https://www.encodeproject.org/files/ENCFF000YDM/@@download/ENCFF000YDM.bam hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VLR bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 411637 Michael Snyder, Stanford 2ec86f9f3246cbf6cca656dbdf4717f7 https://www.encodeproject.org/files/ENCFF001VLR/@@download/ENCFF001VLR.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF565LCU bam unfiltered alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YDI, ENCFF643CGH 1154112739 ENCODE Processing Pipeline 6fce8c59b6537a9860b80f5cd91c221c https://www.encodeproject.org/files/ENCFF565LCU/@@download/ENCFF565LCU.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF867KQD bam unfiltered alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YDG, ENCFF643CGH 1211244304 ENCODE Processing Pipeline f8d57d20fe5ac54ec9313db4dfeae7fc https://www.encodeproject.org/files/ENCFF867KQD/@@download/ENCFF867KQD.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF812FMM bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YDG, ENCFF643CGH 608698216 ENCODE Processing Pipeline 1803f83c2e72217b2dff903b4a74277a https://www.encodeproject.org/files/ENCFF812FMM/@@download/ENCFF812FMM.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF035PHI bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YDI, ENCFF643CGH 760575740 ENCODE Processing Pipeline f39013adeb2d4a6629e4599297da43cc https://www.encodeproject.org/files/ENCFF035PHI/@@download/ENCFF035PHI.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF690ZFM bam unfiltered alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YDI, ENCFF807MUK 1149305482 ENCODE Processing Pipeline 33cdce78f0877d153568cc6a54cb1f05 https://www.encodeproject.org/files/ENCFF690ZFM/@@download/ENCFF690ZFM.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF578GNA bam unfiltered alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YDG, ENCFF807MUK 1205453652 ENCODE Processing Pipeline 475405fda129cfb501b9efc835de2b1b https://www.encodeproject.org/files/ENCFF578GNA/@@download/ENCFF578GNA.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF270WBP bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YDI, ENCFF807MUK 761022508 ENCODE Processing Pipeline dbb0060b21c74015552cd48c784dd43a https://www.encodeproject.org/files/ENCFF270WBP/@@download/ENCFF270WBP.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF865LAP bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YDG, ENCFF807MUK 609099747 ENCODE Processing Pipeline ad784c84d325e2dc12374ad7e6a47ca5 https://www.encodeproject.org/files/ENCFF865LAP/@@download/ENCFF865LAP.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF532KWW bigWig signal p-value ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF494UKO, ENCFF812FMM, ENCFF823WOO 611522181 ENCODE Processing Pipeline 0b631fc72f03fe71fddca699f30d971b https://www.encodeproject.org/files/ENCFF532KWW/@@download/ENCFF532KWW.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF797RNH bigWig signal p-value ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF035PHI, ENCFF494UKO, ENCFF823WOO 606822650 ENCODE Processing Pipeline 9713a0f6f9576a3c7644e507cab0a78d https://www.encodeproject.org/files/ENCFF797RNH/@@download/ENCFF797RNH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF149BRD bigWig signal p-value ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF035PHI, ENCFF494UKO, ENCFF812FMM, ENCFF823WOO 817386703 ENCODE Processing Pipeline 712c533df778331014da735400d721dc https://www.encodeproject.org/files/ENCFF149BRD/@@download/ENCFF149BRD.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF145PYD bigWig fold change over control ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF494UKO, ENCFF812FMM, ENCFF823WOO 414137251 ENCODE Processing Pipeline 0484ad38372a1421a44041cfb9b46f1e https://www.encodeproject.org/files/ENCFF145PYD/@@download/ENCFF145PYD.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF140KTY bigWig fold change over control ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF035PHI, ENCFF494UKO, ENCFF823WOO 435742754 ENCODE Processing Pipeline 93945812abfe95d910f26d34db2210fc https://www.encodeproject.org/files/ENCFF140KTY/@@download/ENCFF140KTY.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF089OHX bigWig fold change over control ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF035PHI, ENCFF494UKO, ENCFF812FMM, ENCFF823WOO 734728332 ENCODE Processing Pipeline 515a580d35f928884917b86eecb58961 https://www.encodeproject.org/files/ENCFF089OHX/@@download/ENCFF089OHX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF860MYE bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF035PHI, ENCFF494UKO, ENCFF823WOO 5566219 ENCODE Processing Pipeline 43b7fdbd721b6b87502353d434f1804f https://www.encodeproject.org/files/ENCFF860MYE/@@download/ENCFF860MYE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF619WBE bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF035PHI, ENCFF494UKO, ENCFF812FMM, ENCFF823WOO 6060241 ENCODE Processing Pipeline 746da158a0de0281aaa5e2292a8ca1ec https://www.encodeproject.org/files/ENCFF619WBE/@@download/ENCFF619WBE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF596TWZ bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF494UKO, ENCFF812FMM, ENCFF823WOO 4479223 ENCODE Processing Pipeline f974f367941a217b4232679bba13caf3 https://www.encodeproject.org/files/ENCFF596TWZ/@@download/ENCFF596TWZ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF916AJB bed narrowPeak optimal idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF596TWZ, ENCFF619WBE, ENCFF860MYE 511807 ENCODE Processing Pipeline 70de96c2bc516912cd7123ec1c0c5bea https://www.encodeproject.org/files/ENCFF916AJB/@@download/ENCFF916AJB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF547CEI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF050OTE 749133 ENCODE Processing Pipeline cba33dea24eb03048ee0a4483e823181 https://www.encodeproject.org/files/ENCFF547CEI/@@download/ENCFF547CEI.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF946TER bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF860MYE 13409614 ENCODE Processing Pipeline 28ccc9cfd087681e80a7ec88e1ee9790 https://www.encodeproject.org/files/ENCFF946TER/@@download/ENCFF946TER.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF486UAF bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF619WBE 13639341 ENCODE Processing Pipeline 430677ea63c43a719a83b1a4f5b8e0a9 https://www.encodeproject.org/files/ENCFF486UAF/@@download/ENCFF486UAF.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF082IQD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF916AJB 1038890 ENCODE Processing Pipeline 5be6370a70123ab21271d9c592318845 https://www.encodeproject.org/files/ENCFF082IQD/@@download/ENCFF082IQD.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF383GMJ bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF596TWZ 10862156 ENCODE Processing Pipeline 70bb5bb78df90dd09b133a7a7e031256 https://www.encodeproject.org/files/ENCFF383GMJ/@@download/ENCFF383GMJ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF050OTE bed narrowPeak conservative idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF596TWZ, ENCFF619WBE, ENCFF860MYE 329994 ENCODE Processing Pipeline 5ecbd3768e31f0cfdc67608e8e0b1d86 https://www.encodeproject.org/files/ENCFF050OTE/@@download/ENCFF050OTE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF528ZQD bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF978ATS 13637065 ENCODE Processing Pipeline bcc3b31407a915b739eb484507cb0a4f https://www.encodeproject.org/files/ENCFF528ZQD/@@download/ENCFF528ZQD.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF332NVE bigWig signal p-value ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG, ENCFF865LAP 769414756 ENCODE Processing Pipeline 5410d0d92cbccafa67b5a82c0f7310f2 https://www.encodeproject.org/files/ENCFF332NVE/@@download/ENCFF332NVE.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF574TBH bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG 5604883 ENCODE Processing Pipeline d0787580587d9830e42b85456e5e8210 https://www.encodeproject.org/files/ENCFF574TBH/@@download/ENCFF574TBH.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF761AMW bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF958APN 11018460 ENCODE Processing Pipeline 003e958c3df8e9cd2eadd176c1adc911 https://www.encodeproject.org/files/ENCFF761AMW/@@download/ENCFF761AMW.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF751YOW bed narrowPeak conservative idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF574TBH, ENCFF958APN, ENCFF978ATS 330335 ENCODE Processing Pipeline 97ddb4de79a943633dc91d727bcb61e2 https://www.encodeproject.org/files/ENCFF751YOW/@@download/ENCFF751YOW.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF428CYS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF851XSC 1034996 ENCODE Processing Pipeline b869c40483923ea8bd1f9b78ae6fe84c https://www.encodeproject.org/files/ENCFF428CYS/@@download/ENCFF428CYS.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF098DKY bigWig signal p-value ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF865LAP 637085238 ENCODE Processing Pipeline c0cfba0a56f609afd937c345d22e4e87 https://www.encodeproject.org/files/ENCFF098DKY/@@download/ENCFF098DKY.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF433ARE bigWig signal p-value ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG 631124841 ENCODE Processing Pipeline b1bf89b5bdd4c08ce485354862486cdc https://www.encodeproject.org/files/ENCFF433ARE/@@download/ENCFF433ARE.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF958APN bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF865LAP 4594619 ENCODE Processing Pipeline fb453334f324d7b5fbd73fa3e3285a75 https://www.encodeproject.org/files/ENCFF958APN/@@download/ENCFF958APN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF851XSC bed narrowPeak optimal idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF574TBH, ENCFF958APN, ENCFF978ATS 509179 ENCODE Processing Pipeline c30f2d65f9f1570a7e3ee65baba3006e https://www.encodeproject.org/files/ENCFF851XSC/@@download/ENCFF851XSC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF319AIP bigWig fold change over control ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF865LAP 416728709 ENCODE Processing Pipeline 2eb3de7458e590310636fd862ce44627 https://www.encodeproject.org/files/ENCFF319AIP/@@download/ENCFF319AIP.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF308ZCH bigWig fold change over control ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG, ENCFF865LAP 713136094 ENCODE Processing Pipeline f25b46a091fbcc9c16a75348b1866cb4 https://www.encodeproject.org/files/ENCFF308ZCH/@@download/ENCFF308ZCH.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF494YLI bigBed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF574TBH 13426644 ENCODE Processing Pipeline 15ad89317f53d8a3fd5b9efb57dfc639 https://www.encodeproject.org/files/ENCFF494YLI/@@download/ENCFF494YLI.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF978ATS bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG, ENCFF865LAP 6060414 ENCODE Processing Pipeline e80a311bbf87a387c80f18e34d9c7930 https://www.encodeproject.org/files/ENCFF978ATS/@@download/ENCFF978ATS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF540IKC bigWig fold change over control ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG 429177010 ENCODE Processing Pipeline cc18bcb5cbb9967ab69b59a5e3653aa2 https://www.encodeproject.org/files/ENCFF540IKC/@@download/ENCFF540IKC.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF287GMP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF751YOW 751009 ENCODE Processing Pipeline e444475318c347926c8e1db48d1fd025 https://www.encodeproject.org/files/ENCFF287GMP/@@download/ENCFF287GMP.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000WER bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WFK 376600899 Michael Snyder, Stanford 1ad1afd1bcddc44697172e5f47f1cb3a https://www.encodeproject.org/files/ENCFF000WER/@@download/ENCFF000WER.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WES bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WFJ 373960952 Michael Snyder, Stanford b60b32a66ab8fff7278f07b16a156fab https://www.encodeproject.org/files/ENCFF000WES/@@download/ENCFF000WES.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WET bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFM 1058410 Michael Snyder, Stanford 85c31803504ebbd0215302d8e8a19088 https://www.encodeproject.org/files/ENCFF000WET/@@download/ENCFF000WET.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WEU bigWig signal ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 276536300 Michael Snyder, Stanford 1ab0ebc91392ff5d01b8fa5239b56c81 https://www.encodeproject.org/files/ENCFF000WEU/@@download/ENCFF000WEU.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WFJ fastq reads ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 868439521 Michael Snyder, Stanford c48425e81a0f8c63920f4d5f675b1a5c https://www.encodeproject.org/files/ENCFF000WFJ/@@download/ENCFF000WFJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFK fastq reads ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 998951452 Michael Snyder, Stanford fcbc281996aaa2e1c0c314632966bc3d https://www.encodeproject.org/files/ENCFF000WFK/@@download/ENCFF000WFK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VFM bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 443807 Michael Snyder, Stanford c2c36ab998bd7024678e17582e8852dc https://www.encodeproject.org/files/ENCFF001VFM/@@download/ENCFF001VFM.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPP bed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 171002 ENCODE Consortium Analysis Working Group 06b4dbcce351dd97c60552789fac7e28 https://www.encodeproject.org/files/ENCFF002CPP/@@download/ENCFF002CPP.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF531XKQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPP 496109 ENCODE Consortium fc85921cda09fce9e643aca3c3042e76 https://www.encodeproject.org/files/ENCFF531XKQ/@@download/ENCFF531XKQ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548FQS bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF643CGH 946131936 ENCODE Processing Pipeline 30759a47c71ab553772731c768bcd8d4 https://www.encodeproject.org/files/ENCFF548FQS/@@download/ENCFF548FQS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF575BMM bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF643CGH 1072586624 ENCODE Processing Pipeline 348ddba49ec9c33205529927b60e60a7 https://www.encodeproject.org/files/ENCFF575BMM/@@download/ENCFF575BMM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145QDZ bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF643CGH 568780266 ENCODE Processing Pipeline 3de5d361afbda850464d5602435d5321 https://www.encodeproject.org/files/ENCFF145QDZ/@@download/ENCFF145QDZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF453OOT bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF643CGH 614922183 ENCODE Processing Pipeline c1f52b93231090d956737dbeac379260 https://www.encodeproject.org/files/ENCFF453OOT/@@download/ENCFF453OOT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF679KFQ bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF807MUK 1067627497 ENCODE Processing Pipeline fca21575ebd30a3d5decde268ee31d62 https://www.encodeproject.org/files/ENCFF679KFQ/@@download/ENCFF679KFQ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF423HKM bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF807MUK 566953412 ENCODE Processing Pipeline ae3d88ed9efdaced69ef9f81553b8cf9 https://www.encodeproject.org/files/ENCFF423HKM/@@download/ENCFF423HKM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF981NUX bam unfiltered alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF807MUK 941720744 ENCODE Processing Pipeline a6993ba171c2a1d088aedb15b6113eda https://www.encodeproject.org/files/ENCFF981NUX/@@download/ENCFF981NUX.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416FSY bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF807MUK 613305456 ENCODE Processing Pipeline dd418e75cf6c5ffa472ba58936de1ebb https://www.encodeproject.org/files/ENCFF416FSY/@@download/ENCFF416FSY.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF211SUY bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF416FSY, ENCFF423HKM, ENCFF545DZO 4975111 ENCODE Processing Pipeline 08b54d16f1245077578ad8d442e24ccc https://www.encodeproject.org/files/ENCFF211SUY/@@download/ENCFF211SUY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550SHJ bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF211SUY 10973153 ENCODE Processing Pipeline 8187a5009b3e77e931e1a7db6e618fed https://www.encodeproject.org/files/ENCFF550SHJ/@@download/ENCFF550SHJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF494DOZ bed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF211SUY, ENCFF234PNC, ENCFF318RHH 94983 ENCODE Processing Pipeline af713cd9a66c0c8b0e08bc1d92e129e2 https://www.encodeproject.org/files/ENCFF494DOZ/@@download/ENCFF494DOZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF400YNR bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 171700386 ENCODE Processing Pipeline e3593fc42b8c1956006370a1e9f1bc7c https://www.encodeproject.org/files/ENCFF400YNR/@@download/ENCFF400YNR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF016PPW bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF318RHH 10023142 ENCODE Processing Pipeline a20e1fe1a75978adf1ddd9c3129f6b66 https://www.encodeproject.org/files/ENCFF016PPW/@@download/ENCFF016PPW.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF957ZZK bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 254943703 ENCODE Processing Pipeline 3642a09b676a06eff7e41b0ea7884c63 https://www.encodeproject.org/files/ENCFF957ZZK/@@download/ENCFF957ZZK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF826MXI bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 75431254 ENCODE Processing Pipeline 8219bfc775076c47ac689441419a7eaa https://www.encodeproject.org/files/ENCFF826MXI/@@download/ENCFF826MXI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF598FSR bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 196957766 ENCODE Processing Pipeline 8216076a5563dd66db8144afdf196456 https://www.encodeproject.org/files/ENCFF598FSR/@@download/ENCFF598FSR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF133SDO bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF416FSY, ENCFF423HKM, ENCFF545DZO 435622910 ENCODE Processing Pipeline 19cebd86fb8fabad4f5bf131f4b6f650 https://www.encodeproject.org/files/ENCFF133SDO/@@download/ENCFF133SDO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF318RHH bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 4125263 ENCODE Processing Pipeline 5e9262a0cb34be36eda68e27d952dc6e https://www.encodeproject.org/files/ENCFF318RHH/@@download/ENCFF318RHH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF970MDY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF494DOZ 228392 ENCODE Processing Pipeline ceb331cb651f6f1c15d834eeb8e3d9c3 https://www.encodeproject.org/files/ENCFF970MDY/@@download/ENCFF970MDY.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF977DSU bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF416FSY, ENCFF423HKM, ENCFF545DZO 164893083 ENCODE Processing Pipeline 6408e1810259b813b074cc876cfa5c6f https://www.encodeproject.org/files/ENCFF977DSU/@@download/ENCFF977DSU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF234PNC bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 4079736 ENCODE Processing Pipeline e0b33802feebc9eead970443f79cf85f https://www.encodeproject.org/files/ENCFF234PNC/@@download/ENCFF234PNC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604SXH bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF234PNC 10015543 ENCODE Processing Pipeline 0751ab640d0c5b320e6f2f5110eb48da https://www.encodeproject.org/files/ENCFF604SXH/@@download/ENCFF604SXH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF503DJE bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF145QDZ, ENCFF477ZKJ 75752666 ENCODE Processing Pipeline c1bb9583449ff02af924b81559a29b13 https://www.encodeproject.org/files/ENCFF503DJE/@@download/ENCFF503DJE.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF403FUL bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 171774662 ENCODE Processing Pipeline 9ef05b45eb2c67dbfda3fdc4d1b73e9e https://www.encodeproject.org/files/ENCFF403FUL/@@download/ENCFF403FUL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF950RYY bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145QDZ, ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 432564084 ENCODE Processing Pipeline 1e1e68fc1fd10aab615c8f440ebd9f5f https://www.encodeproject.org/files/ENCFF950RYY/@@download/ENCFF950RYY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF828PQY bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF876ANR 9906825 ENCODE Processing Pipeline 032a45dbeb8afcc92edafae35086505f https://www.encodeproject.org/files/ENCFF828PQY/@@download/ENCFF828PQY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF014RBU bed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF211SUY, ENCFF234PNC, ENCFF318RHH 135992 ENCODE Processing Pipeline 22bf3b30438a5ab0a401f82cf845218f https://www.encodeproject.org/files/ENCFF014RBU/@@download/ENCFF014RBU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF961OQC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014RBU 292349 ENCODE Processing Pipeline d1d9a750d4e3a7685a21d21bc7ca21eb https://www.encodeproject.org/files/ENCFF961OQC/@@download/ENCFF961OQC.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF876ANR bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF145QDZ, ENCFF477ZKJ 4027629 ENCODE Processing Pipeline 00460a10d6b21f0e18119408f314958a https://www.encodeproject.org/files/ENCFF876ANR/@@download/ENCFF876ANR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF191DAH bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF202BET 10035639 ENCODE Processing Pipeline 97b62a368bcdf472fbcceb94ba651cb7 https://www.encodeproject.org/files/ENCFF191DAH/@@download/ENCFF191DAH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065PEA bigWig signal p-value ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145QDZ, ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 164122600 ENCODE Processing Pipeline af516ed8d1714f6be0e3e4193c054c52 https://www.encodeproject.org/files/ENCFF065PEA/@@download/ENCFF065PEA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760UNU bigBed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF271YEG 10976150 ENCODE Processing Pipeline a593db2669f135681859eb4dabfa5c45 https://www.encodeproject.org/files/ENCFF760UNU/@@download/ENCFF760UNU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF916UJD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF039SJV 229326 ENCODE Processing Pipeline b12cc02180acaf0fd9371ed8107581fd https://www.encodeproject.org/files/ENCFF916UJD/@@download/ENCFF916UJD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF063QJC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF923CHO 337647 ENCODE Processing Pipeline 6d6748430798663982f4d51600f92482 https://www.encodeproject.org/files/ENCFF063QJC/@@download/ENCFF063QJC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352EXA bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 255221583 ENCODE Processing Pipeline ccb740cdf922e814fc138d4df04ae099 https://www.encodeproject.org/files/ENCFF352EXA/@@download/ENCFF352EXA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF497BFW bigWig fold change over control ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF145QDZ, ENCFF477ZKJ 198025363 ENCODE Processing Pipeline 228b2d53b8590cf4eaee7603b53f49d1 https://www.encodeproject.org/files/ENCFF497BFW/@@download/ENCFF497BFW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF202BET bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 4124595 ENCODE Processing Pipeline 1e370665ae7e2c65bc6e86efc942fab3 https://www.encodeproject.org/files/ENCFF202BET/@@download/ENCFF202BET.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF923CHO bed narrowPeak optimal idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF202BET, ENCFF271YEG, ENCFF419RSJ, ENCFF876ANR 132521 ENCODE Processing Pipeline f9f7667bb470ffd1e8c1277d1f30472a https://www.encodeproject.org/files/ENCFF923CHO/@@download/ENCFF923CHO.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF271YEG bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF145QDZ, ENCFF453OOT, ENCFF477ZKJ, ENCFF710SMS 4974598 ENCODE Processing Pipeline 86e9f78de015712579aa085e846eea07 https://www.encodeproject.org/files/ENCFF271YEG/@@download/ENCFF271YEG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039SJV bed narrowPeak conservative idr thresholded peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF202BET, ENCFF271YEG, ENCFF419RSJ, ENCFF876ANR 96005 ENCODE Processing Pipeline 1f41e5ba38daf03682d74731d8316267 https://www.encodeproject.org/files/ENCFF039SJV/@@download/ENCFF039SJV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XMU bigBed narrowPeak peaks ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJN 261986 Kevin Struhl, HMS 221cce3c5b31e7f422354a4d19da18d9 https://www.encodeproject.org/files/ENCFF000XMU/@@download/ENCFF000XMU.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XMV bigWig signal ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 464415682 Kevin Struhl, HMS 0f7d29511ac97571890b32d549e69ef3 https://www.encodeproject.org/files/ENCFF000XMV/@@download/ENCFF000XMV.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XMW bam alignments ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XNG 1319205593 Kevin Struhl, HMS b9d2201a99bcb195f209e09b7fb1ad67 https://www.encodeproject.org/files/ENCFF000XMW/@@download/ENCFF000XMW.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XMX bam alignments ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XNH 1356831417 Kevin Struhl, HMS b64d315af0033241dc72d36b01436e76 https://www.encodeproject.org/files/ENCFF000XMX/@@download/ENCFF000XMX.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XNG fastq reads ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 1044825021 Kevin Struhl, HMS f38f103f84644790fd73b755dffe6abd https://www.encodeproject.org/files/ENCFF000XNG/@@download/ENCFF000XNG.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XNH fastq reads ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 1073966864 Kevin Struhl, HMS 100af29a366ef1918dc0116d5c2b172b https://www.encodeproject.org/files/ENCFF000XNH/@@download/ENCFF000XNH.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VJN bed narrowPeak peaks ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 85837 Kevin Struhl, HMS 2672f2f2644009f212527008fb24685c https://www.encodeproject.org/files/ENCFF001VJN/@@download/ENCFF001VJN.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CTL bed narrowPeak optimal idr thresholded peaks ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 71082 ENCODE Consortium Analysis Working Group 8f967bb3703e5256f6d32991a7f16ad4 https://www.encodeproject.org/files/ENCFF002CTL/@@download/ENCFF002CTL.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF390NRL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTL 265959 ENCODE Consortium a9976d139b1a4a1e619426760cb03362 https://www.encodeproject.org/files/ENCFF390NRL/@@download/ENCFF390NRL.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000YFJ bam alignments ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YFV 557957429 Kevin Struhl, HMS dd41a5025c35d54529d541b2b0f2ba4c https://www.encodeproject.org/files/ENCFF000YFJ/@@download/ENCFF000YFJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFK bigBed narrowPeak peaks ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLY 95672 Kevin Struhl, HMS 40914d3434a076ecd373cd454997285f https://www.encodeproject.org/files/ENCFF000YFK/@@download/ENCFF000YFK.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFL bigWig signal ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 371008711 Kevin Struhl, HMS 441597c9714f4366e2c52f709d302949 https://www.encodeproject.org/files/ENCFF000YFL/@@download/ENCFF000YFL.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YFM bam alignments ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YFW 884050408 Kevin Struhl, HMS 41290ca31331cf440a7df44690d6b903 https://www.encodeproject.org/files/ENCFF000YFM/@@download/ENCFF000YFM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFV fastq reads ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 430495780 Kevin Struhl, HMS 439c941c937f3cc9f430f45015447055 https://www.encodeproject.org/files/ENCFF000YFV/@@download/ENCFF000YFV.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF000YFW fastq reads ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 687084388 Kevin Struhl, HMS c611192a803de171681a0bb310ca01be https://www.encodeproject.org/files/ENCFF000YFW/@@download/ENCFF000YFW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF001VLY bed narrowPeak peaks ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 15999 Kevin Struhl, HMS bb4b58423b77a01e4bde05290e5f507b https://www.encodeproject.org/files/ENCFF001VLY/@@download/ENCFF001VLY.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CVN bed narrowPeak optimal idr thresholded peaks ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 30756 ENCODE Consortium Analysis Working Group f96359d316397bebb076f46153d104bf https://www.encodeproject.org/files/ENCFF002CVN/@@download/ENCFF002CVN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF946MDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVN 121750 ENCODE Consortium b7c9773e137ee786a12d109c6d4d87e6 https://www.encodeproject.org/files/ENCFF946MDJ/@@download/ENCFF946MDJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000PMW bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PNI 584941358 Richard Myers, HAIB a39f05c87bd04bea02f72a99dc090f66 https://www.encodeproject.org/files/ENCFF000PMW/@@download/ENCFF000PMW.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PMX bigBed broadPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UHC 1222667 Richard Myers, HAIB aa82a1b89e0d0780ff285bc4a10823dd https://www.encodeproject.org/files/ENCFF000PMX/@@download/ENCFF000PMX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PMY bigBed broadPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UHD 1126793 Richard Myers, HAIB 2031772267f0e6bcec2c0fb57091a6d5 https://www.encodeproject.org/files/ENCFF000PMY/@@download/ENCFF000PMY.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PNB bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PNL 1663740427 Richard Myers, HAIB f78edd667a7d09e1f0a17d704b0baf2f https://www.encodeproject.org/files/ENCFF000PNB/@@download/ENCFF000PNB.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PNC bigWig raw signal ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 33834139 Richard Myers, HAIB 73f6ad96ff726fff6268fc8793e60d07 https://www.encodeproject.org/files/ENCFF000PNC/@@download/ENCFF000PNC.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PND bigWig raw signal ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 67381380 Richard Myers, HAIB 0fbea12c92d39d40d9c71211933287ca https://www.encodeproject.org/files/ENCFF000PND/@@download/ENCFF000PND.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PNI fastq reads ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 965140256 Richard Myers, HAIB 9f8e21100976bbac2e5c40761ffb97ae https://www.encodeproject.org/files/ENCFF000PNI/@@download/ENCFF000PNI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, low read depth biological replicates with identical biosample ENCFF000PNL fastq reads ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1649555183 Richard Myers, HAIB ba1ae09fba7734a29bc5ea2fa8b54c08 https://www.encodeproject.org/files/ENCFF000PNL/@@download/ENCFF000PNL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, low read depth biological replicates with identical biosample ENCFF001UHC bed broadPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 579512 Richard Myers, HAIB 929aa6881c7ee64102be46e90ccb38e8 https://www.encodeproject.org/files/ENCFF001UHC/@@download/ENCFF001UHC.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UHD bed broadPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 565612 Richard Myers, HAIB a5a5a7f3dd50336a798802c8faf941b4 https://www.encodeproject.org/files/ENCFF001UHD/@@download/ENCFF001UHD.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CKW bed narrowPeak optimal idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 409235 ENCODE Consortium Analysis Working Group c6dd4a82ab33a51514512734bb367425 https://www.encodeproject.org/files/ENCFF002CKW/@@download/ENCFF002CKW.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF019HYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CKW 1012661 ENCODE Consortium 9fb95eef1701381835bd632d0fd61026 https://www.encodeproject.org/files/ENCFF019HYQ/@@download/ENCFF019HYQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF591PPT bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PNI, ENCFF643CGH 697360733 ENCODE Processing Pipeline e2ffd63f46e78e0eb6c0bd0a5b568a35 https://www.encodeproject.org/files/ENCFF591PPT/@@download/ENCFF591PPT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF254BKS bam unfiltered alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PNI, ENCFF643CGH 1185277091 ENCODE Processing Pipeline 1621ee640e8222adbbc85b50f8ede2b2 https://www.encodeproject.org/files/ENCFF254BKS/@@download/ENCFF254BKS.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF122YTI bam unfiltered alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PNL, ENCFF643CGH 1822380687 ENCODE Processing Pipeline 382c0786206f53375673685dc99c4cda https://www.encodeproject.org/files/ENCFF122YTI/@@download/ENCFF122YTI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF684WXH bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PNL, ENCFF643CGH 1195087170 ENCODE Processing Pipeline bf5b75d7b73c57e78d757ebc365cf4cd https://www.encodeproject.org/files/ENCFF684WXH/@@download/ENCFF684WXH.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF388ZCI bam unfiltered alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PNI, ENCFF807MUK 1183547475 ENCODE Processing Pipeline 97a39b7f0c23b5ad780b771c0e7eae85 https://www.encodeproject.org/files/ENCFF388ZCI/@@download/ENCFF388ZCI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF362YKT bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PNI, ENCFF807MUK 697739276 ENCODE Processing Pipeline cd21f8ac416b1697a1c41339b6efbcd9 https://www.encodeproject.org/files/ENCFF362YKT/@@download/ENCFF362YKT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF946PIG bam unfiltered alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PNL, ENCFF807MUK 1818184464 ENCODE Processing Pipeline 3d105d5a99ff13eb7d588d3c7a1f451e https://www.encodeproject.org/files/ENCFF946PIG/@@download/ENCFF946PIG.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF090TEI bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PNL, ENCFF807MUK 1195817983 ENCODE Processing Pipeline 3b4939e848e1b44ae7f5b0dfce5689e3 https://www.encodeproject.org/files/ENCFF090TEI/@@download/ENCFF090TEI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF583HVS bigWig signal p-value ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF285LVE, ENCFF591PPT 419803385 ENCODE Processing Pipeline 6d9f4c8f9e22d1962905376ffbe89c26 https://www.encodeproject.org/files/ENCFF583HVS/@@download/ENCFF583HVS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF537WYP bigWig signal p-value ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF285LVE, ENCFF684WXH 545556977 ENCODE Processing Pipeline b8688c5aec4c5a04fcfeca3980a88b98 https://www.encodeproject.org/files/ENCFF537WYP/@@download/ENCFF537WYP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF713PYM bigWig signal p-value ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF285LVE, ENCFF591PPT, ENCFF684WXH 539298266 ENCODE Processing Pipeline 0e340ea04ed571af29184c5d26eca58a https://www.encodeproject.org/files/ENCFF713PYM/@@download/ENCFF713PYM.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF286SQT bigWig fold change over control ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF285LVE, ENCFF591PPT 292488311 ENCODE Processing Pipeline 55cf049befa96bc9c8020b83a78770d0 https://www.encodeproject.org/files/ENCFF286SQT/@@download/ENCFF286SQT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF757ZHO bigWig fold change over control ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF285LVE, ENCFF684WXH 497214929 ENCODE Processing Pipeline adaf70dca5b340c9f25751e8d6bc7c9a https://www.encodeproject.org/files/ENCFF757ZHO/@@download/ENCFF757ZHO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF206RHP bigWig fold change over control ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF285LVE, ENCFF591PPT, ENCFF684WXH 660356793 ENCODE Processing Pipeline 88f5827a2354236a1c4db516f39d5142 https://www.encodeproject.org/files/ENCFF206RHP/@@download/ENCFF206RHP.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF564XKE bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF285LVE, ENCFF684WXH 6925826 ENCODE Processing Pipeline 1d915c2a1de58ceddb0067f3611811ea https://www.encodeproject.org/files/ENCFF564XKE/@@download/ENCFF564XKE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF256WQQ bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF285LVE, ENCFF591PPT 6283965 ENCODE Processing Pipeline 5b7b77abff470add846d0506e082d6fa https://www.encodeproject.org/files/ENCFF256WQQ/@@download/ENCFF256WQQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF143GQW bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF285LVE, ENCFF591PPT, ENCFF684WXH 7016329 ENCODE Processing Pipeline bc40cfe8afdc8b1fe70cbb3287199d07 https://www.encodeproject.org/files/ENCFF143GQW/@@download/ENCFF143GQW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF517QYO bigBed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF564XKE 11994182 ENCODE Processing Pipeline e27ba2244b39218c6ca8ed7c94edfcb7 https://www.encodeproject.org/files/ENCFF517QYO/@@download/ENCFF517QYO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF258KMR bigBed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF256WQQ 12027271 ENCODE Processing Pipeline 2fadbbb152f1c2f7b785b1b1a5a75908 https://www.encodeproject.org/files/ENCFF258KMR/@@download/ENCFF258KMR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF214TVS bed narrowPeak conservative idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF143GQW, ENCFF256WQQ, ENCFF419RSJ, ENCFF564XKE 492263 ENCODE Processing Pipeline 699d5880f2907531b6167ee53e009b5d https://www.encodeproject.org/files/ENCFF214TVS/@@download/ENCFF214TVS.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF560WKN bigBed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF143GQW 11939780 ENCODE Processing Pipeline f1542db201c500477dafaa6177ed28b6 https://www.encodeproject.org/files/ENCFF560WKN/@@download/ENCFF560WKN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF137ZTF bed narrowPeak optimal idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF143GQW, ENCFF256WQQ, ENCFF419RSJ, ENCFF564XKE 506973 ENCODE Processing Pipeline 3fa17c8e5fc33900dab085e36ac7b333 https://www.encodeproject.org/files/ENCFF137ZTF/@@download/ENCFF137ZTF.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF384UWA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF137ZTF 1166223 ENCODE Processing Pipeline f29cfb0142d877e839e571dc5f88b188 https://www.encodeproject.org/files/ENCFF384UWA/@@download/ENCFF384UWA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF162YMO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF214TVS 1139358 ENCODE Processing Pipeline a9125a149ce92bf0193c4a30829d08d8 https://www.encodeproject.org/files/ENCFF162YMO/@@download/ENCFF162YMO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF345ZRA bigWig signal p-value ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF090TEI, ENCFF346RZT, ENCFF362YKT 542562143 ENCODE Processing Pipeline ffe582364610970f58a91b99381e34ab https://www.encodeproject.org/files/ENCFF345ZRA/@@download/ENCFF345ZRA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF846ZDQ bigWig fold change over control ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF346RZT, ENCFF362YKT 294440150 ENCODE Processing Pipeline 98b0c3cb1263bdfd515fac7feadad589 https://www.encodeproject.org/files/ENCFF846ZDQ/@@download/ENCFF846ZDQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF198UGH bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF346RZT, ENCFF362YKT 6197544 ENCODE Processing Pipeline 59087602ebdd393540fcfe52ba68d390 https://www.encodeproject.org/files/ENCFF198UGH/@@download/ENCFF198UGH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF061EOS bed narrowPeak optimal idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF198UGH, ENCFF261HIN, ENCFF764SZC 502534 ENCODE Processing Pipeline 27a1ee77f9d3729b9065eb836173ef26 https://www.encodeproject.org/files/ENCFF061EOS/@@download/ENCFF061EOS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF487TQT bigWig signal p-value ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF090TEI, ENCFF346RZT 545144401 ENCODE Processing Pipeline d596abad05c18ceb421118325b6e682b https://www.encodeproject.org/files/ENCFF487TQT/@@download/ENCFF487TQT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF071KXB bigWig fold change over control ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF090TEI, ENCFF346RZT 504484897 ENCODE Processing Pipeline 60956f37acc8b995583365360abcb801 https://www.encodeproject.org/files/ENCFF071KXB/@@download/ENCFF071KXB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF468JHA bigWig fold change over control ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF090TEI, ENCFF346RZT, ENCFF362YKT 666740794 ENCODE Processing Pipeline d76eed37558cdfe83ba5937ee49ee3e2 https://www.encodeproject.org/files/ENCFF468JHA/@@download/ENCFF468JHA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF956UXY bigBed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261HIN 11973851 ENCODE Processing Pipeline 0f11432cb072f2751a92c877dc98c326 https://www.encodeproject.org/files/ENCFF956UXY/@@download/ENCFF956UXY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF883NGP bigBed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF764SZC 11925884 ENCODE Processing Pipeline 956d2286b9ec903a5e1fbbbd7c902aea https://www.encodeproject.org/files/ENCFF883NGP/@@download/ENCFF883NGP.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF979IOQ bed narrowPeak conservative idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF198UGH, ENCFF261HIN, ENCFF764SZC 491580 ENCODE Processing Pipeline b09fb9055adafaf7d96008d45bb78a37 https://www.encodeproject.org/files/ENCFF979IOQ/@@download/ENCFF979IOQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF659ASH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF979IOQ 1137102 ENCODE Processing Pipeline ef291f27dcac32edcafdc86ebec7610b https://www.encodeproject.org/files/ENCFF659ASH/@@download/ENCFF659ASH.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF777PTX bigWig signal p-value ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF346RZT, ENCFF362YKT 433425648 ENCODE Processing Pipeline 1d48293094f75b0130e43fd76e8389bd https://www.encodeproject.org/files/ENCFF777PTX/@@download/ENCFF777PTX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF764SZC bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF090TEI, ENCFF346RZT, ENCFF362YKT 7007473 ENCODE Processing Pipeline ed042efeb5e71d9e2f310ec612f4cdd1 https://www.encodeproject.org/files/ENCFF764SZC/@@download/ENCFF764SZC.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF785YXA bigBed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF198UGH 11915204 ENCODE Processing Pipeline 629806c5409144898c0a458714201b8e https://www.encodeproject.org/files/ENCFF785YXA/@@download/ENCFF785YXA.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF297MSY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF061EOS 1157055 ENCODE Processing Pipeline 95892026e7ee3336d6ebe081090de28f https://www.encodeproject.org/files/ENCFF297MSY/@@download/ENCFF297MSY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF261HIN bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF090TEI, ENCFF346RZT 6908599 ENCODE Processing Pipeline a8297f85febf96ca4b0c377d90d16167 https://www.encodeproject.org/files/ENCFF261HIN/@@download/ENCFF261HIN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000BQQ bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 491631755 Bradley Bernstein, Broad 6f6eea2a6690bcf21e84f15b75ec72e7 https://www.encodeproject.org/files/ENCFF000BQQ/@@download/ENCFF000BQQ.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from insufficient read depth ENCFF000BQR bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 2 276419447 Bradley Bernstein, Broad 98e4648ff91866f5b8e8373903469617 https://www.encodeproject.org/files/ENCFF000BQR/@@download/ENCFF000BQR.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from insufficient read depth ENCFF000BQT bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 3 56647028 Bradley Bernstein, Broad 167cc1b230786ed74aa509ef6df3c992 https://www.encodeproject.org/files/ENCFF000BQT/@@download/ENCFF000BQT.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from insufficient read depth ENCFF000BQU bigBed broadPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001SYE 1694295 Bradley Bernstein, Broad 979acc5f6ba855c8537772d577efd072 https://www.encodeproject.org/files/ENCFF000BQU/@@download/ENCFF000BQU.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF000BQX bigWig signal ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 301409223 Bradley Bernstein, Broad 491d90d59a61cd35938804c849464b1e https://www.encodeproject.org/files/ENCFF000BQX/@@download/ENCFF000BQX.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from insufficient read depth ENCFF000BQY fastq reads ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 3 36 single-ended 65558286 Bradley Bernstein, Broad d2091660ffa5fbad94fa8643be3e4bcb https://www.encodeproject.org/files/ENCFF000BQY/@@download/ENCFF000BQY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BQV/, /files/ENCFF000BQW/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF000BRD fastq reads ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 2 36 single-ended 448340551 Bradley Bernstein, Broad 6d1b818b3a808b73a288367510936cd3 https://www.encodeproject.org/files/ENCFF000BRD/@@download/ENCFF000BRD.fastq.gz Illumina Genome Analyzer II /files/ENCFF000BQV/, /files/ENCFF000BQW/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF000BRG fastq reads ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 833105110 Bradley Bernstein, Broad 4ffd5b5cd2c65f72d7064d50ab6297ff https://www.encodeproject.org/files/ENCFF000BRG/@@download/ENCFF000BRG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BQV/, /files/ENCFF000BQW/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001SYE bed broadPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1055076 Bradley Bernstein, Broad a2d44a17c7d4a6abba66c667871926ed https://www.encodeproject.org/files/ENCFF001SYE/@@download/ENCFF001SYE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from insufficient read depth ENCFF002CEH bed narrowPeak optimal idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 766613 ENCODE Consortium Analysis Working Group 79618d0c39b6e86ab98478f10c438082 https://www.encodeproject.org/files/ENCFF002CEH/@@download/ENCFF002CEH.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from insufficient read depth ENCFF735YCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CEH 1652556 ENCODE Consortium 2444c8fc93c4c753a212be8188fe5654 https://www.encodeproject.org/files/ENCFF735YCZ/@@download/ENCFF735YCZ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF735DEG bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BQY, ENCFF000BRD, ENCFF000BRG, ENCFF807MUK 451873033 ENCODE Processing Pipeline ea98278e719328b0d7a7e9d653ab976e https://www.encodeproject.org/files/ENCFF735DEG/@@download/ENCFF735DEG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF105MFJ bam unfiltered alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BQY, ENCFF000BRD, ENCFF000BRG, ENCFF807MUK 1585294938 ENCODE Processing Pipeline 52aa405af7ff181a369476f540ef5ed6 https://www.encodeproject.org/files/ENCFF105MFJ/@@download/ENCFF105MFJ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF383IIX bam unfiltered alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BQY, ENCFF000BRD, ENCFF000BRG, ENCFF643CGH 1589273597 ENCODE Processing Pipeline 29c4da847f219359cf818fb195187453 https://www.encodeproject.org/files/ENCFF383IIX/@@download/ENCFF383IIX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF209BDU bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BQY, ENCFF000BRD, ENCFF000BRG, ENCFF643CGH 451689962 ENCODE Processing Pipeline 652b1220e89e8ceb3e19cf3d1d59aeb8 https://www.encodeproject.org/files/ENCFF209BDU/@@download/ENCFF209BDU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF084VMV bed narrowPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF039WIG, ENCFF735DEG 3946334 ENCODE Processing Pipeline e9baaf031d262ea751d5c643caaea098 https://www.encodeproject.org/files/ENCFF084VMV/@@download/ENCFF084VMV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF810DGE bigWig fold change over control ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF039WIG, ENCFF735DEG 196961257 ENCODE Processing Pipeline abe0e50fd8d67d26cf7217333d845e45 https://www.encodeproject.org/files/ENCFF810DGE/@@download/ENCFF810DGE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF626RQP bigWig signal p-value ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF039WIG, ENCFF735DEG 298347240 ENCODE Processing Pipeline 9faca013c7e964c7865c83c2b864a57a https://www.encodeproject.org/files/ENCFF626RQP/@@download/ENCFF626RQP.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF104TJO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF655XWN 945621 ENCODE Processing Pipeline 693e8b52ee967a4da2986c0a2acd26d3 https://www.encodeproject.org/files/ENCFF104TJO/@@download/ENCFF104TJO.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF136CCV bigBed narrowPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF084VMV 9302764 ENCODE Processing Pipeline 19ab3043598b667c733b2abc21fa1a09 https://www.encodeproject.org/files/ENCFF136CCV/@@download/ENCFF136CCV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF655XWN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF001TDO, ENCFF084VMV 506648 ENCODE Processing Pipeline bf25661cc13c9eaff1968fb0d53b2b0c https://www.encodeproject.org/files/ENCFF655XWN/@@download/ENCFF655XWN.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF326BTR bigBed narrowPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF536OTV 9300815 ENCODE Processing Pipeline f4fe83a5c817a8f58af7df96df5a72a1 https://www.encodeproject.org/files/ENCFF326BTR/@@download/ENCFF326BTR.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF522JCV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF419RSJ, ENCFF536OTV 510623 ENCODE Processing Pipeline 5d74b29165b756ad6b75cc4f5e4ee9f3 https://www.encodeproject.org/files/ENCFF522JCV/@@download/ENCFF522JCV.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF262JSJ bigWig signal p-value ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF209BDU, ENCFF780ZFP 260229466 ENCODE Processing Pipeline a6b314f388a2b4b86121e76fcd305057 https://www.encodeproject.org/files/ENCFF262JSJ/@@download/ENCFF262JSJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF307NZZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF522JCV 951730 ENCODE Processing Pipeline 7a9988c851eedc1ddb8265ebd5ef49a5 https://www.encodeproject.org/files/ENCFF307NZZ/@@download/ENCFF307NZZ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF822MVW bigWig fold change over control ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF209BDU, ENCFF780ZFP 196428093 ENCODE Processing Pipeline 31bbd95148b6ee6db72b0b8d5890111b https://www.encodeproject.org/files/ENCFF822MVW/@@download/ENCFF822MVW.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF536OTV bed narrowPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF209BDU, ENCFF780ZFP 3944807 ENCODE Processing Pipeline 729f1f18a35f9df85ceb6bb042a73fd6 https://www.encodeproject.org/files/ENCFF536OTV/@@download/ENCFF536OTV.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001HGZ bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHM 518778328 John Stamatoyannopoulos, UW e67bf67562a8e1141231a0ef40f2f929 https://www.encodeproject.org/files/ENCFF001HGZ/@@download/ENCFF001HGZ.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHA bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHL 380075818 John Stamatoyannopoulos, UW e9fcfa0cc9005e82eeeaaf4c118f01a9 https://www.encodeproject.org/files/ENCFF001HHA/@@download/ENCFF001HHA.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHB bigBed broadPeak hotspots ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPF 3171928 John Stamatoyannopoulos, UW 2694c99f3fdff63d03f8f44d28901e9d https://www.encodeproject.org/files/ENCFF001HHB/@@download/ENCFF001HHB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHC bigBed broadPeak hotspots ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPG 3824080 John Stamatoyannopoulos, UW 1dd9351a9da902b2eba2b4751395f8da https://www.encodeproject.org/files/ENCFF001HHC/@@download/ENCFF001HHC.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHD bigBed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPH 1104434 John Stamatoyannopoulos, UW aadbcbe0933ba19063ebe0a29a00c942 https://www.encodeproject.org/files/ENCFF001HHD/@@download/ENCFF001HHD.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHE bigBed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPI 812715 John Stamatoyannopoulos, UW bf2691ae71cca1f13b8e34ddee1011a1 https://www.encodeproject.org/files/ENCFF001HHE/@@download/ENCFF001HHE.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHF bigWig raw signal ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGZ 105337447 John Stamatoyannopoulos, UW 6889558a00a336186a1244a306ee8bef https://www.encodeproject.org/files/ENCFF001HHF/@@download/ENCFF001HHF.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHH bigWig raw signal ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHA 80927303 John Stamatoyannopoulos, UW cd62d966f024d3a50defb25df9871717 https://www.encodeproject.org/files/ENCFF001HHH/@@download/ENCFF001HHH.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHL fastq reads ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 566451108 John Stamatoyannopoulos, UW 4abe5999cb02f0a638c546f5afd3ddc7 https://www.encodeproject.org/files/ENCFF001HHL/@@download/ENCFF001HHL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HHU/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HHM fastq reads ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 606503249 John Stamatoyannopoulos, UW e957e6cdc5c092a4a964c102501ced43 https://www.encodeproject.org/files/ENCFF001HHM/@@download/ENCFF001HHM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HHU/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XPF bed broadPeak hotspots ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGZ 2247060 John Stamatoyannopoulos, UW fe2e7390eee15da2871608ca180870f9 https://www.encodeproject.org/files/ENCFF001XPF/@@download/ENCFF001XPF.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XPG bed broadPeak hotspots ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHA 2643176 John Stamatoyannopoulos, UW c7047aa5013926382433639c3fd85d70 https://www.encodeproject.org/files/ENCFF001XPG/@@download/ENCFF001XPG.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XPH bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGZ 787042 John Stamatoyannopoulos, UW f11b3a03feb68926d56833f0ccdc185b https://www.encodeproject.org/files/ENCFF001XPH/@@download/ENCFF001XPH.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XPI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHA 544011 John Stamatoyannopoulos, UW 8ff0ac43097610e612420463de007152 https://www.encodeproject.org/files/ENCFF001XPI/@@download/ENCFF001XPI.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF002DCL bed narrowPeak optimal idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HGZ, ENCFF001HHA 842741 ENCODE Consortium Analysis Working Group 07bb4f85501f023a001441bc56e9184d https://www.encodeproject.org/files/ENCFF002DCL/@@download/ENCFF002DCL.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF359MPW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCL 1764115 ENCODE Consortium e597cd4f7c544f163b89246145d0cd14 https://www.encodeproject.org/files/ENCFF359MPW/@@download/ENCFF359MPW.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF510URR bam unfiltered alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHL, ENCFF643CGH 624088768 ENCODE Processing Pipeline 2752588c446dbbe25814f6e655b4a55b https://www.encodeproject.org/files/ENCFF510URR/@@download/ENCFF510URR.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF238QDB bam unfiltered alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHM, ENCFF643CGH 698457902 ENCODE Processing Pipeline b869ee339407c0f57061a9ae8c198cbc https://www.encodeproject.org/files/ENCFF238QDB/@@download/ENCFF238QDB.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF662TCI bam unfiltered alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHL, ENCFF807MUK 622205701 ENCODE Processing Pipeline edba11f42418008d247916e6275c25ed https://www.encodeproject.org/files/ENCFF662TCI/@@download/ENCFF662TCI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF908YKV bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHM, ENCFF643CGH 459543879 ENCODE Processing Pipeline 5301419166407b2067c389d4bd2e8489 https://www.encodeproject.org/files/ENCFF908YKV/@@download/ENCFF908YKV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF217TBI bam unfiltered alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHM, ENCFF807MUK 696547242 ENCODE Processing Pipeline 0e00716977adb1e6a9fb4bf14cf28f7e https://www.encodeproject.org/files/ENCFF217TBI/@@download/ENCFF217TBI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF517CVH bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHL, ENCFF643CGH 273329782 ENCODE Processing Pipeline 077aa2a367463886c4abff2ff669f3f1 https://www.encodeproject.org/files/ENCFF517CVH/@@download/ENCFF517CVH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF360WOG bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHL, ENCFF807MUK 273209071 ENCODE Processing Pipeline 366ace0d13cb46a01acbc26fbf3dbcda https://www.encodeproject.org/files/ENCFF360WOG/@@download/ENCFF360WOG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF913KQZ bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHM, ENCFF807MUK 458821300 ENCODE Processing Pipeline 275d438e1d4b393056993e4a978b5b7a https://www.encodeproject.org/files/ENCFF913KQZ/@@download/ENCFF913KQZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF277LKD bigWig signal p-value ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF182XEA, ENCFF913KQZ 254369539 ENCODE Processing Pipeline c36e43a97a689bc386ef5b2221bbe51a https://www.encodeproject.org/files/ENCFF277LKD/@@download/ENCFF277LKD.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF393PBU bigWig fold change over control ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF182XEA, ENCFF360WOG 104364947 ENCODE Processing Pipeline 5343e03b617e222a372c1d24c1123e5e https://www.encodeproject.org/files/ENCFF393PBU/@@download/ENCFF393PBU.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF516NVT bigWig fold change over control ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF182XEA, ENCFF913KQZ 160514481 ENCODE Processing Pipeline 403ede22d2dc8d3f875feb9ffb2ad733 https://www.encodeproject.org/files/ENCFF516NVT/@@download/ENCFF516NVT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF250QOO bigWig signal p-value ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF182XEA, ENCFF360WOG 218961984 ENCODE Processing Pipeline 993c5855a733a466666353ecaf1354fb https://www.encodeproject.org/files/ENCFF250QOO/@@download/ENCFF250QOO.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF372DMX bigWig signal p-value ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF182XEA, ENCFF360WOG, ENCFF913KQZ 293248851 ENCODE Processing Pipeline 6debb7eea2a8484559edf2c0219e6c3d https://www.encodeproject.org/files/ENCFF372DMX/@@download/ENCFF372DMX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF450VWA bigWig fold change over control ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF182XEA, ENCFF360WOG, ENCFF913KQZ 248303940 ENCODE Processing Pipeline c54db1ad9cbc165a065069b3e6fae2d4 https://www.encodeproject.org/files/ENCFF450VWA/@@download/ENCFF450VWA.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF852LHB bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF182XEA, ENCFF360WOG, ENCFF913KQZ 4203756 ENCODE Processing Pipeline 1b281d589db433f3659beacd7d0130c3 https://www.encodeproject.org/files/ENCFF852LHB/@@download/ENCFF852LHB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF852QGT bigBed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF737TLI 6583879 ENCODE Processing Pipeline f3e4641c492d03ee2f6ac6178d0efb10 https://www.encodeproject.org/files/ENCFF852QGT/@@download/ENCFF852QGT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF512GVA bigBed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF046FAZ 5186570 ENCODE Processing Pipeline abfda1b6e8cafd55cd256915ac744236 https://www.encodeproject.org/files/ENCFF512GVA/@@download/ENCFF512GVA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF481CRQ bed narrowPeak conservative idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF046FAZ, ENCFF737TLI, ENCFF852LHB 544527 ENCODE Processing Pipeline a1315a87312c047089f9d24d78ed25df https://www.encodeproject.org/files/ENCFF481CRQ/@@download/ENCFF481CRQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF737TLI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF182XEA, ENCFF913KQZ 3247552 ENCODE Processing Pipeline e700f729e1a480aacaccfa7ace1dd918 https://www.encodeproject.org/files/ENCFF737TLI/@@download/ENCFF737TLI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF545DIR bigBed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF852LHB 10224854 ENCODE Processing Pipeline 1969910cf9bfdcaee12a17a7449c176e https://www.encodeproject.org/files/ENCFF545DIR/@@download/ENCFF545DIR.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF046FAZ bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF182XEA, ENCFF360WOG 2503847 ENCODE Processing Pipeline fa4e3d0f2e1435f5c31e8e90d090f8c6 https://www.encodeproject.org/files/ENCFF046FAZ/@@download/ENCFF046FAZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF732EYO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF481CRQ 1039816 ENCODE Processing Pipeline c01eedcde5bd5bee0bc1e9dd8aabb47d https://www.encodeproject.org/files/ENCFF732EYO/@@download/ENCFF732EYO.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF733YSO bed narrowPeak optimal idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF046FAZ, ENCFF737TLI, ENCFF852LHB 648391 ENCODE Processing Pipeline d2404a9f8ac0a0b865ac97ec3f6460e4 https://www.encodeproject.org/files/ENCFF733YSO/@@download/ENCFF733YSO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF099CZC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF733YSO 1187427 ENCODE Processing Pipeline d3993793163b614143cc30ff7bc018f1 https://www.encodeproject.org/files/ENCFF099CZC/@@download/ENCFF099CZC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000CAC bigBed broadPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SZU 1453844 Bradley Bernstein, Broad 222c564e7ab4d16eda40f5cb8c020cf6 https://www.encodeproject.org/files/ENCFF000CAC/@@download/ENCFF000CAC.bigBed hg19 archived control low read depth, low read length, inconsistent platforms ENCFF000CAD bigWig signal ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 418843191 Bradley Bernstein, Broad 8223f347eda93c88d387a80de0b98428 https://www.encodeproject.org/files/ENCFF000CAD/@@download/ENCFF000CAD.bigWig hg19 archived control low read depth, low read length, inconsistent platforms missing derived_from ENCFF000CAE bam alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CAK 1334099366 Bradley Bernstein, Broad 71ccda1e38f55acd6ac8fbf41d5a74cd https://www.encodeproject.org/files/ENCFF000CAE/@@download/ENCFF000CAE.bam hg19 archived control low read depth, low read length, inconsistent platforms ENCFF000CAK fastq reads ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1434105663 Bradley Bernstein, Broad 635be2b8a8c0f219fe2e05472498c9dd https://www.encodeproject.org/files/ENCFF000CAK/@@download/ENCFF000CAK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, inconsistent platforms ENCFF001SZU bed broadPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 861263 Bradley Bernstein, Broad da1c6c67989a94b183501eff6601cd54 https://www.encodeproject.org/files/ENCFF001SZU/@@download/ENCFF001SZU.bed.gz hg19 archived control low read depth, low read length, inconsistent platforms missing derived_from ENCFF180HYH bam alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAK, ENCFF807MUK 1118692408 ENCODE Processing Pipeline da68fc5067d52bb5cc85e3d485634a02 https://www.encodeproject.org/files/ENCFF180HYH/@@download/ENCFF180HYH.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF591MPS bam unfiltered alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAK, ENCFF807MUK 1849624209 ENCODE Processing Pipeline dd5b24bcd0c43c5ea98a73c30cfc8950 https://www.encodeproject.org/files/ENCFF591MPS/@@download/ENCFF591MPS.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF176YLT bam unfiltered alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAK, ENCFF643CGH 1856747570 ENCODE Processing Pipeline 5549e603450b4d1485d041fd152cf0ba https://www.encodeproject.org/files/ENCFF176YLT/@@download/ENCFF176YLT.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF942ZJL bam alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAK, ENCFF643CGH 1117921279 ENCODE Processing Pipeline e29041ea7f35a3d5d9ec61d36b50dadd https://www.encodeproject.org/files/ENCFF942ZJL/@@download/ENCFF942ZJL.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF946VXN bigBed narrowPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF714NDI 12812163 ENCODE Processing Pipeline adee301ff63a826cb9cac14e17194569 https://www.encodeproject.org/files/ENCFF946VXN/@@download/ENCFF946VXN.bigBed hg19 released control low read depth, low read length, inconsistent platforms ENCFF386EBW bigWig signal p-value ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF180HYH, ENCFF574XYY 371820813 ENCODE Processing Pipeline 0da555795ef2f32a2566ba0fc4a27bb5 https://www.encodeproject.org/files/ENCFF386EBW/@@download/ENCFF386EBW.bigWig hg19 released control low read depth, low read length, inconsistent platforms ENCFF864WOR bigWig fold change over control ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF180HYH, ENCFF574XYY 427233429 ENCODE Processing Pipeline d8a77b1af34a3bcef4cc1ca03102ea22 https://www.encodeproject.org/files/ENCFF864WOR/@@download/ENCFF864WOR.bigWig hg19 released control low read depth, low read length, inconsistent platforms ENCFF714NDI bed narrowPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF180HYH, ENCFF574XYY 5600436 ENCODE Processing Pipeline e404f9cee25f574cd50e7e6435f4eeea https://www.encodeproject.org/files/ENCFF714NDI/@@download/ENCFF714NDI.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF308YXQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF119SZQ 139644 ENCODE Processing Pipeline aeee29927e8df8f5cc9a9039ac9eb01f https://www.encodeproject.org/files/ENCFF308YXQ/@@download/ENCFF308YXQ.bigBed hg19 released control low read depth, low read length, inconsistent platforms ENCFF119SZQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF714NDI 40335 ENCODE Processing Pipeline 8a553a2c58776995e1c11e9309804ac6 https://www.encodeproject.org/files/ENCFF119SZQ/@@download/ENCFF119SZQ.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF690EIR bed narrowPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF942ZJL 5594123 ENCODE Processing Pipeline 0d5653cd19114ddf53f6f91c1e16cc08 https://www.encodeproject.org/files/ENCFF690EIR/@@download/ENCFF690EIR.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF336FFT bigWig signal p-value ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF942ZJL 371617973 ENCODE Processing Pipeline fb94915b4e9d4cef0fda2df79c660774 https://www.encodeproject.org/files/ENCFF336FFT/@@download/ENCFF336FFT.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF157ZQI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF690EIR 37641 ENCODE Processing Pipeline 1ba35432577e2284a365aab8265aab2a https://www.encodeproject.org/files/ENCFF157ZQI/@@download/ENCFF157ZQI.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF813CWF bigWig fold change over control ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF942ZJL 426510611 ENCODE Processing Pipeline 46bdec5aec9c467b872fb169e69c0ce3 https://www.encodeproject.org/files/ENCFF813CWF/@@download/ENCFF813CWF.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF644EHG bigBed narrowPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF690EIR 12823081 ENCODE Processing Pipeline 2a82cb1116ec126b748131accb33e85a https://www.encodeproject.org/files/ENCFF644EHG/@@download/ENCFF644EHG.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF581TWR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF157ZQI 135389 ENCODE Processing Pipeline 75fba3577cfc9b8b6f926462149c1c86 https://www.encodeproject.org/files/ENCFF581TWR/@@download/ENCFF581TWR.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF000NYC bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NYK 763139690 Richard Myers, HAIB e496d25a3a25b0a3311fe3a52b11646d https://www.encodeproject.org/files/ENCFF000NYC/@@download/ENCFF000NYC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NYD bigBed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXS 200961 Richard Myers, HAIB 222306f35061a6607873f0c2e10d78cf https://www.encodeproject.org/files/ENCFF000NYD/@@download/ENCFF000NYD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NYE bigBed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXT 168287 Richard Myers, HAIB 513a4ce93ec1e04dc661bda834dbae41 https://www.encodeproject.org/files/ENCFF000NYE/@@download/ENCFF000NYE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NYF bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NYN 976393022 Richard Myers, HAIB a0db4c4f98b9b5f42007955b2afaa751 https://www.encodeproject.org/files/ENCFF000NYF/@@download/ENCFF000NYF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NYG bigWig raw signal ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 8687856 Richard Myers, HAIB 326175949a41294491bb704a219a1cdd https://www.encodeproject.org/files/ENCFF000NYG/@@download/ENCFF000NYG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000NYI bigWig raw signal ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 6190287 Richard Myers, HAIB a55185f2b42444c4310e801dbb25a05a https://www.encodeproject.org/files/ENCFF000NYI/@@download/ENCFF000NYI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NYK fastq reads ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 612423185 Richard Myers, HAIB 10a1b8c37dfe6fc057631dc03acee9d3 https://www.encodeproject.org/files/ENCFF000NYK/@@download/ENCFF000NYK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NYN fastq reads ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1021427875 Richard Myers, HAIB 23f72aa666973d48f41a7bc3113e6ee0 https://www.encodeproject.org/files/ENCFF000NYN/@@download/ENCFF000NYN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODO/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF001TXS bed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 98767 Richard Myers, HAIB 5be290b00c270f6f6dec142726dfae9d https://www.encodeproject.org/files/ENCFF001TXS/@@download/ENCFF001TXS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001TXT bed broadPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 89336 Richard Myers, HAIB a20d72c70d2e82be2b7bdf75e03d3c1f https://www.encodeproject.org/files/ENCFF001TXT/@@download/ENCFF001TXT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CHH bed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 143093 ENCODE Consortium Analysis Working Group 044de7bd595573dff64ec47830e92bf3 https://www.encodeproject.org/files/ENCFF002CHH/@@download/ENCFF002CHH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF251ELV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHH 357623 ENCODE Consortium 06d1266c5a02e4d189525d5e2a77da78 https://www.encodeproject.org/files/ENCFF251ELV/@@download/ENCFF251ELV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF471UKN bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF643CGH 800235482 ENCODE Processing Pipeline 07bee68494af308a80fa981ad85ec93f https://www.encodeproject.org/files/ENCFF471UKN/@@download/ENCFF471UKN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF894EID bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF643CGH 473312374 ENCODE Processing Pipeline 54a9b1c6eb2cb3ae493132121dbe776e https://www.encodeproject.org/files/ENCFF894EID/@@download/ENCFF894EID.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF407MEC bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF643CGH 1040754385 ENCODE Processing Pipeline 765f0dfa19820083c259e276b929d703 https://www.encodeproject.org/files/ENCFF407MEC/@@download/ENCFF407MEC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF569QEN bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF643CGH 521791845 ENCODE Processing Pipeline 80b445f0a422ba4c8c19d56dd7bcba4e https://www.encodeproject.org/files/ENCFF569QEN/@@download/ENCFF569QEN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF753DEQ bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF807MUK 797739085 ENCODE Processing Pipeline 8a7b8c91aaf455558a8a7283d94898b1 https://www.encodeproject.org/files/ENCFF753DEQ/@@download/ENCFF753DEQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF929UNL bam unfiltered alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF807MUK 1040220372 ENCODE Processing Pipeline e7489ba9c425374b3c1fef5f5b3dbd1e https://www.encodeproject.org/files/ENCFF929UNL/@@download/ENCFF929UNL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF549FFR bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF807MUK 470964396 ENCODE Processing Pipeline 114d6ca233ae105f66a9e7cfce0432c5 https://www.encodeproject.org/files/ENCFF549FFR/@@download/ENCFF549FFR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF892PZK bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF807MUK 515481333 ENCODE Processing Pipeline 9788117fc415cf1e9e720205efce13c2 https://www.encodeproject.org/files/ENCFF892PZK/@@download/ENCFF892PZK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF346XFA bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF430ZCF, ENCFF562HPN, ENCFF894EID 637095392 ENCODE Processing Pipeline 1dba3fc1be83714a78d31b6cb92e0f20 https://www.encodeproject.org/files/ENCFF346XFA/@@download/ENCFF346XFA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF054ANM bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN 711361632 ENCODE Processing Pipeline 348862782d39dde39cdb350e62a4d6b4 https://www.encodeproject.org/files/ENCFF054ANM/@@download/ENCFF054ANM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF043OML bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN, ENCFF894EID 662282019 ENCODE Processing Pipeline 79b9b7a5fb717595658d457674ccb4bd https://www.encodeproject.org/files/ENCFF043OML/@@download/ENCFF043OML.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF854VYC bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF430ZCF, ENCFF562HPN, ENCFF894EID 323372919 ENCODE Processing Pipeline a975d52eb492007c2e352becc30b24b4 https://www.encodeproject.org/files/ENCFF854VYC/@@download/ENCFF854VYC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF700VHX bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN 346653276 ENCODE Processing Pipeline f81b651c33dc8a72368e3a1b56ffa285 https://www.encodeproject.org/files/ENCFF700VHX/@@download/ENCFF700VHX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF027PQW bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN, ENCFF894EID 572068614 ENCODE Processing Pipeline 1d46765d5cc050d2653a972a3e4cd0f8 https://www.encodeproject.org/files/ENCFF027PQW/@@download/ENCFF027PQW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF758EWS bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN 4232323 ENCODE Processing Pipeline 5d46accfa744a67675230dfae78da98d https://www.encodeproject.org/files/ENCFF758EWS/@@download/ENCFF758EWS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF569CKR bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF260LSE 10890033 ENCODE Processing Pipeline 00dfcddc639c73dc01ffc3e22fa8b890 https://www.encodeproject.org/files/ENCFF569CKR/@@download/ENCFF569CKR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF260LSE bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF430ZCF, ENCFF562HPN, ENCFF894EID 4767248 ENCODE Processing Pipeline 178b73bacfea699e8ae7bd809aad2601 https://www.encodeproject.org/files/ENCFF260LSE/@@download/ENCFF260LSE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF300OPW bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF430ZCF, ENCFF562HPN, ENCFF569QEN, ENCFF894EID 5394954 ENCODE Processing Pipeline 302865d2933fc134d66d8f1f850b2c20 https://www.encodeproject.org/files/ENCFF300OPW/@@download/ENCFF300OPW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF780SWK bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF300OPW 11415507 ENCODE Processing Pipeline 9b5c43a4cfc4faac3afae14b6b758df6 https://www.encodeproject.org/files/ENCFF780SWK/@@download/ENCFF780SWK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF519TUM bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF758EWS 10407062 ENCODE Processing Pipeline f9aa457e6aad978be7c7bbc10720be03 https://www.encodeproject.org/files/ENCFF519TUM/@@download/ENCFF519TUM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF854AIH bed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260LSE, ENCFF300OPW, ENCFF419RSJ, ENCFF758EWS 78145 ENCODE Processing Pipeline f4af8f1be6738544efb126972f42fcbf https://www.encodeproject.org/files/ENCFF854AIH/@@download/ENCFF854AIH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF313CII bed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF260LSE, ENCFF300OPW, ENCFF419RSJ, ENCFF758EWS 120679 ENCODE Processing Pipeline ca4db15a84a95381cc0cb84611326272 https://www.encodeproject.org/files/ENCFF313CII/@@download/ENCFF313CII.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF382TDG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF313CII 258099 ENCODE Processing Pipeline 74064b21f789cfec8d2f539fd8212010 https://www.encodeproject.org/files/ENCFF382TDG/@@download/ENCFF382TDG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF347ZDK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF854AIH 198073 ENCODE Processing Pipeline 13ae190567f8ca008fd8a463bdbb5113 https://www.encodeproject.org/files/ENCFF347ZDK/@@download/ENCFF347ZDK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF196PCN bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 584738206 ENCODE Processing Pipeline 35a1273a5ac4b91906edeb2e2757c786 https://www.encodeproject.org/files/ENCFF196PCN/@@download/ENCFF196PCN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF034OUE bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF549FFR, ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 673955842 ENCODE Processing Pipeline ba6d01a3ea8553e98276c9e8fd202c0a https://www.encodeproject.org/files/ENCFF034OUE/@@download/ENCFF034OUE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF690WBQ bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 322827359 ENCODE Processing Pipeline b9bbe29b7171d090076dcf73438d8f5c https://www.encodeproject.org/files/ENCFF690WBQ/@@download/ENCFF690WBQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF446OLU bigWig signal p-value ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 695995074 ENCODE Processing Pipeline dc20f794d579e2e572ffb7852404d9e5 https://www.encodeproject.org/files/ENCFF446OLU/@@download/ENCFF446OLU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF141AMS bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 340513214 ENCODE Processing Pipeline e720d37332d97509ab1950611151cd6a https://www.encodeproject.org/files/ENCFF141AMS/@@download/ENCFF141AMS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF577BYX bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF974PTU 10876785 ENCODE Processing Pipeline 7b63579379c76c99d81fe25817f4dff6 https://www.encodeproject.org/files/ENCFF577BYX/@@download/ENCFF577BYX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF320YSB bigWig fold change over control ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF549FFR, ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 572423563 ENCODE Processing Pipeline b90c10ab45d8e019e97d94257f8bbd0d https://www.encodeproject.org/files/ENCFF320YSB/@@download/ENCFF320YSB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF974PTU bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 4725395 ENCODE Processing Pipeline 1e04b973d8c86d59b1cbb44967b2f31a https://www.encodeproject.org/files/ENCFF974PTU/@@download/ENCFF974PTU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF970MSE bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF793WOV 10611545 ENCODE Processing Pipeline cba03904bd44990e843da8dd7a50833a https://www.encodeproject.org/files/ENCFF970MSE/@@download/ENCFF970MSE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF841AZX bed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF294FPR, ENCFF793WOV, ENCFF974PTU 65843 ENCODE Processing Pipeline e553a7ff02a1df831bf9577e2e2188d4 https://www.encodeproject.org/files/ENCFF841AZX/@@download/ENCFF841AZX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF106SRL bigBed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF294FPR 11359849 ENCODE Processing Pipeline 31713241cc525477ef9a957ccdcb792a https://www.encodeproject.org/files/ENCFF106SRL/@@download/ENCFF106SRL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF294FPR bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF549FFR, ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 5337479 ENCODE Processing Pipeline 77dd166d27078568d6838f12adc8de99 https://www.encodeproject.org/files/ENCFF294FPR/@@download/ENCFF294FPR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF793WOV bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 4359463 ENCODE Processing Pipeline 59cf874f4e38d5ca45ad163d6c632bda https://www.encodeproject.org/files/ENCFF793WOV/@@download/ENCFF793WOV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF116OSK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF841AZX 143849 ENCODE Processing Pipeline 9690b1c8db0f07a8f07752d83f85e3bc https://www.encodeproject.org/files/ENCFF116OSK/@@download/ENCFF116OSK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF677KJB bed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF294FPR, ENCFF793WOV, ENCFF974PTU 109221 ENCODE Processing Pipeline 0c909169189fe56ee39c28dcf7ff48fa https://www.encodeproject.org/files/ENCFF677KJB/@@download/ENCFF677KJB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF874ATN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF677KJB 242901 ENCODE Processing Pipeline 1f22dfa21e4359d618112610231c9d5e https://www.encodeproject.org/files/ENCFF874ATN/@@download/ENCFF874ATN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000YPV bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YQK 683240789 Michael Snyder, Stanford 11957a8ad639ab8aa4482c13ebc38989 https://www.encodeproject.org/files/ENCFF000YPV/@@download/ENCFF000YPV.bam hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF000YPX bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNJ 87156 Michael Snyder, Stanford 10c3fbb1b68c5836ffe013f2b1577378 https://www.encodeproject.org/files/ENCFF000YPX/@@download/ENCFF000YPX.bigBed hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF000YPY bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YQL 702413070 Michael Snyder, Stanford 71dfb1c517cc8965af2141aa99ab81ab https://www.encodeproject.org/files/ENCFF000YPY/@@download/ENCFF000YPY.bam hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF000YQA bigWig signal ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 442799093 Michael Snyder, Stanford 5ab67c5c954e2623f5f613998224946d https://www.encodeproject.org/files/ENCFF000YQA/@@download/ENCFF000YQA.bigWig hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YQK fastq reads ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 532913313 Michael Snyder, Stanford 7c338ce6000baf4383d808b4708160da https://www.encodeproject.org/files/ENCFF000YQK/@@download/ENCFF000YQK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF000YQL fastq reads ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 544864453 Michael Snyder, Stanford 0f41e9f05107a3bc8c02e5ad9c682863 https://www.encodeproject.org/files/ENCFF000YQL/@@download/ENCFF000YQL.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF001VNJ bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 11198 Michael Snyder, Stanford 566bc3cbb717536c65406705379f91c9 https://www.encodeproject.org/files/ENCFF001VNJ/@@download/ENCFF001VNJ.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CWU bed narrowPeak optimal idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 38158 ENCODE Consortium Analysis Working Group e6499640822783d31c0238b31687b4fa https://www.encodeproject.org/files/ENCFF002CWU/@@download/ENCFF002CWU.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read length ENCFF620CZB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWU 129738 ENCODE Consortium f7b370fd98bb8938b19416fa44782ff9 https://www.encodeproject.org/files/ENCFF620CZB/@@download/ENCFF620CZB.bigBed hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF498WIP bam unfiltered alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YQK, ENCFF643CGH 686419637 ENCODE Processing Pipeline 701ab74485aafe6192f13f1c3628f6d9 https://www.encodeproject.org/files/ENCFF498WIP/@@download/ENCFF498WIP.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF202MXB bam unfiltered alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YQL, ENCFF643CGH 705555583 ENCODE Processing Pipeline 925a201e2724740ad847a71aba17b2f2 https://www.encodeproject.org/files/ENCFF202MXB/@@download/ENCFF202MXB.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF172VKS bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YQL, ENCFF643CGH 463794807 ENCODE Processing Pipeline cd50556102eec8e147561ae550d501e9 https://www.encodeproject.org/files/ENCFF172VKS/@@download/ENCFF172VKS.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF009UJV bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YQK, ENCFF643CGH 433316885 ENCODE Processing Pipeline 402fe62448dc84de66216044274bbc84 https://www.encodeproject.org/files/ENCFF009UJV/@@download/ENCFF009UJV.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF982PDN bam unfiltered alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YQL, ENCFF807MUK 703749565 ENCODE Processing Pipeline cd5c4e33a04f1c3cb0e72bd9aa7d1da5 https://www.encodeproject.org/files/ENCFF982PDN/@@download/ENCFF982PDN.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF885GBQ bam unfiltered alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YQK, ENCFF807MUK 684674978 ENCODE Processing Pipeline bae2adbe04d5a3582666ff99abb60613 https://www.encodeproject.org/files/ENCFF885GBQ/@@download/ENCFF885GBQ.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF541YJQ bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YQK, ENCFF807MUK 433740354 ENCODE Processing Pipeline 440ee47a4f521ddf14298b9bf6766603 https://www.encodeproject.org/files/ENCFF541YJQ/@@download/ENCFF541YJQ.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF752FZP bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YQL, ENCFF807MUK 464229968 ENCODE Processing Pipeline 82f88e8d5e70b50ecb5a0410ddae3360 https://www.encodeproject.org/files/ENCFF752FZP/@@download/ENCFF752FZP.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF490SOP bigWig fold change over control ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF172VKS 223005117 ENCODE Processing Pipeline f5f09f28483f364e59e6918023c83fb9 https://www.encodeproject.org/files/ENCFF490SOP/@@download/ENCFF490SOP.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF984UHX bigWig signal p-value ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF009UJV, ENCFF156NSV, ENCFF715JBE 428773380 ENCODE Processing Pipeline d3692120d90549024afb0d6af1ca368c https://www.encodeproject.org/files/ENCFF984UHX/@@download/ENCFF984UHX.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF050DLK bigWig fold change over control ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF009UJV, ENCFF156NSV, ENCFF715JBE 268542956 ENCODE Processing Pipeline 7a2bd466b63310fb80259a82bbf2ac6f https://www.encodeproject.org/files/ENCFF050DLK/@@download/ENCFF050DLK.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF614UQS bigWig signal p-value ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF172VKS 264315506 ENCODE Processing Pipeline da1e1add98cd2f8d6176467f8d8919ad https://www.encodeproject.org/files/ENCFF614UQS/@@download/ENCFF614UQS.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF398GPT bigWig signal p-value ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF009UJV, ENCFF156NSV, ENCFF172VKS, ENCFF715JBE 521233349 ENCODE Processing Pipeline 95ea2e354dfc52253419ac34005bafd0 https://www.encodeproject.org/files/ENCFF398GPT/@@download/ENCFF398GPT.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF299ZLZ bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF290ZKZ 13198435 ENCODE Processing Pipeline 02462ecc9b0592dd3486a6e82142b807 https://www.encodeproject.org/files/ENCFF299ZLZ/@@download/ENCFF299ZLZ.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF276GCO bigWig fold change over control ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF009UJV, ENCFF156NSV, ENCFF172VKS, ENCFF715JBE 474271862 ENCODE Processing Pipeline 92a0d10da23f530cf3b6bb54f2fb36aa https://www.encodeproject.org/files/ENCFF276GCO/@@download/ENCFF276GCO.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF819SAS bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF009UJV, ENCFF156NSV, ENCFF715JBE 5621410 ENCODE Processing Pipeline dff61b40e4222fbfe8a49a4d3aff3dd8 https://www.encodeproject.org/files/ENCFF819SAS/@@download/ENCFF819SAS.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF765RFM bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF819SAS 12895414 ENCODE Processing Pipeline a7c8968bd51b375f35754f3009ab6cdf https://www.encodeproject.org/files/ENCFF765RFM/@@download/ENCFF765RFM.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF993YKH bed narrowPeak conservative idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF290ZKZ, ENCFF419RSJ, ENCFF503XCY, ENCFF819SAS 40150 ENCODE Processing Pipeline 1d7a21782836001fb52dfcadb8a7c24b https://www.encodeproject.org/files/ENCFF993YKH/@@download/ENCFF993YKH.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF308QHX bed narrowPeak optimal idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF290ZKZ, ENCFF419RSJ, ENCFF503XCY, ENCFF819SAS 56228 ENCODE Processing Pipeline a8ddaff626781bb6d717dc4eb33d7668 https://www.encodeproject.org/files/ENCFF308QHX/@@download/ENCFF308QHX.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF503XCY bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF172VKS 4633615 ENCODE Processing Pipeline f5d1dc0e003eb55ec5d8e93e2377fe2b https://www.encodeproject.org/files/ENCFF503XCY/@@download/ENCFF503XCY.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF290ZKZ bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF009UJV, ENCFF156NSV, ENCFF172VKS, ENCFF715JBE 6155554 ENCODE Processing Pipeline 0cb7dca2e48261da83ee5fa833757d7f https://www.encodeproject.org/files/ENCFF290ZKZ/@@download/ENCFF290ZKZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF371PMS bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF503XCY 10414110 ENCODE Processing Pipeline 254a0424ce6caca870d6609b3bf55f03 https://www.encodeproject.org/files/ENCFF371PMS/@@download/ENCFF371PMS.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF225DKT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF993YKH 133522 ENCODE Processing Pipeline f32bfceca4a2045710480cb60370f049 https://www.encodeproject.org/files/ENCFF225DKT/@@download/ENCFF225DKT.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF679NGW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF308QHX 159392 ENCODE Processing Pipeline a5ecca5ce213514baf54ce4419704f3d https://www.encodeproject.org/files/ENCFF679NGW/@@download/ENCFF679NGW.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF864YVP bigWig signal p-value ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR 427557073 ENCODE Processing Pipeline 2cbe88ea3cffe82b0e2311656dba199e https://www.encodeproject.org/files/ENCFF864YVP/@@download/ENCFF864YVP.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF209NFH bigWig fold change over control ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR 273969793 ENCODE Processing Pipeline b6104703a9264e967ef87c10a4fd2fbd https://www.encodeproject.org/files/ENCFF209NFH/@@download/ENCFF209NFH.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF790RYU bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR 5598548 ENCODE Processing Pipeline b32947328791f45a48f53c1fdbec9f7e https://www.encodeproject.org/files/ENCFF790RYU/@@download/ENCFF790RYU.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF785WEJ bigWig fold change over control ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF752FZP 223493477 ENCODE Processing Pipeline 6583986ecd68f1c28079b740f113a7b3 https://www.encodeproject.org/files/ENCFF785WEJ/@@download/ENCFF785WEJ.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF874PSR bigWig signal p-value ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR, ENCFF752FZP 524872065 ENCODE Processing Pipeline b1d71d8f44cc23294c9067a63771c028 https://www.encodeproject.org/files/ENCFF874PSR/@@download/ENCFF874PSR.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF318HRX bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF752FZP 4637578 ENCODE Processing Pipeline ccc246bc6aff2f88324d1564a514cd48 https://www.encodeproject.org/files/ENCFF318HRX/@@download/ENCFF318HRX.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF084VID bigWig signal p-value ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF752FZP 264543243 ENCODE Processing Pipeline 461aa39d6fa34cb40b08d3550d0d9c40 https://www.encodeproject.org/files/ENCFF084VID/@@download/ENCFF084VID.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF800FII bigWig fold change over control ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR, ENCFF752FZP 481105297 ENCODE Processing Pipeline 9d2c98633094bee520809ba26029de7b https://www.encodeproject.org/files/ENCFF800FII/@@download/ENCFF800FII.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF573QSE bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR, ENCFF752FZP 6194534 ENCODE Processing Pipeline a138d372bad6dfdb6a60da64b6ffd555 https://www.encodeproject.org/files/ENCFF573QSE/@@download/ENCFF573QSE.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF075CME bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF573QSE 13196575 ENCODE Processing Pipeline afee96c45ed64517d3e0dc7bf52cd149 https://www.encodeproject.org/files/ENCFF075CME/@@download/ENCFF075CME.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF252ARH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF056FNQ 134263 ENCODE Processing Pipeline af173a71c8b05e10be9fb138e9dba1d0 https://www.encodeproject.org/files/ENCFF252ARH/@@download/ENCFF252ARH.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF466LVN bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF318HRX 10415039 ENCODE Processing Pipeline 108faba4c3d4b27c061fef71b3b059bd https://www.encodeproject.org/files/ENCFF466LVN/@@download/ENCFF466LVN.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF056FNQ bed narrowPeak conservative idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF318HRX, ENCFF573QSE, ENCFF790RYU 40579 ENCODE Processing Pipeline e8111c73c049aca893b9790e1f339f8e https://www.encodeproject.org/files/ENCFF056FNQ/@@download/ENCFF056FNQ.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF349UJR bigBed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF790RYU 12936255 ENCODE Processing Pipeline 4ed599a2db811318030ace05541ed01d https://www.encodeproject.org/files/ENCFF349UJR/@@download/ENCFF349UJR.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF299OMG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF944GJH 162883 ENCODE Processing Pipeline 616d26330e16aa1b186ae2e0e294360c https://www.encodeproject.org/files/ENCFF299OMG/@@download/ENCFF299OMG.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF944GJH bed narrowPeak optimal idr thresholded peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF318HRX, ENCFF573QSE, ENCFF790RYU 58560 ENCODE Processing Pipeline b3ff6578520e0ba6f5791c57d2409267 https://www.encodeproject.org/files/ENCFF944GJH/@@download/ENCFF944GJH.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF527SCA fastq reads ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF239LFN 2511063505 Michael Snyder, Stanford 25298c51c3b92bcf6dddba903c82992b SRA:SRR6212628 https://www.encodeproject.org/files/ENCFF527SCA/@@download/ENCFF527SCA.fastq.gz Illumina HiSeq 4000 /files/ENCFF610QSY/ released antibody characterized with exemption ENCFF239LFN fastq reads ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF527SCA 2792532854 Michael Snyder, Stanford 82f85121b40fd11c4812fc0586f39e1b SRA:SRR6212628 https://www.encodeproject.org/files/ENCFF239LFN/@@download/ENCFF239LFN.fastq.gz Illumina HiSeq 4000 /files/ENCFF183XHS/ released antibody characterized with exemption ENCFF013KSH bam unfiltered alignments ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF239LFN, ENCFF527SCA, ENCFF807MUK 5058094741 ENCODE Processing Pipeline 7b6d96d8f1e9da58068fb87e7af76bd1 https://www.encodeproject.org/files/ENCFF013KSH/@@download/ENCFF013KSH.bam hg19 released antibody characterized with exemption ENCFF475SVF bam unfiltered alignments ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF239LFN, ENCFF527SCA, ENCFF643CGH 5062099583 ENCODE Processing Pipeline a470d90d8b9559ee77b4f54ad003acee https://www.encodeproject.org/files/ENCFF475SVF/@@download/ENCFF475SVF.bam GRCh38 released antibody characterized with exemption ENCFF894PHG bam alignments ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF239LFN, ENCFF527SCA, ENCFF643CGH 4154017074 ENCODE Processing Pipeline 0772d273acb85c039943f8521d8888d5 https://www.encodeproject.org/files/ENCFF894PHG/@@download/ENCFF894PHG.bam GRCh38 released antibody characterized with exemption ENCFF622IZB bam alignments ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF239LFN, ENCFF527SCA, ENCFF807MUK 4151295077 ENCODE Processing Pipeline f9b10bdc8a5a9638d2b29c857ad74dad https://www.encodeproject.org/files/ENCFF622IZB/@@download/ENCFF622IZB.bam hg19 released antibody characterized with exemption ENCFF810PKF bigWig signal p-value ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF080TZU, ENCFF622IZB 1230958657 ENCODE Processing Pipeline 68c5429bd0deb44fb4b24dbad9c20d6b https://www.encodeproject.org/files/ENCFF810PKF/@@download/ENCFF810PKF.bigWig hg19 released antibody characterized with exemption ENCFF039PUW bed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF080TZU, ENCFF622IZB 6776523 ENCODE Processing Pipeline 7f3d79db32c87814cfd1f8f89aece011 https://www.encodeproject.org/files/ENCFF039PUW/@@download/ENCFF039PUW.bed.gz hg19 released antibody characterized with exemption ENCFF829NEO bigBed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF039PUW 13832529 ENCODE Processing Pipeline 165991eb423f943259ea305ba4096802 https://www.encodeproject.org/files/ENCFF829NEO/@@download/ENCFF829NEO.bigBed hg19 released antibody characterized with exemption ENCFF918RQW bigWig fold change over control ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF080TZU, ENCFF622IZB 1261834829 ENCODE Processing Pipeline 3be0cf5ed9e149336c16d5ec015499a0 https://www.encodeproject.org/files/ENCFF918RQW/@@download/ENCFF918RQW.bigWig hg19 released antibody characterized with exemption ENCFF984EZB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF039PUW 774948 ENCODE Processing Pipeline cba2a3cc5d76cd33e4db70500d735e67 https://www.encodeproject.org/files/ENCFF984EZB/@@download/ENCFF984EZB.bed.gz hg19 released antibody characterized with exemption ENCFF835CUO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF984EZB 1651307 ENCODE Processing Pipeline 2bb71893446676bdf3f784dd7c371b80 https://www.encodeproject.org/files/ENCFF835CUO/@@download/ENCFF835CUO.bigBed hg19 released antibody characterized with exemption ENCFF817NUM bigWig signal p-value ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF562CIX, ENCFF894PHG 1257395579 ENCODE Processing Pipeline 960b5be3b677b741eca05483d062ce41 https://www.encodeproject.org/files/ENCFF817NUM/@@download/ENCFF817NUM.bigWig GRCh38 released antibody characterized with exemption ENCFF976WZF bigWig fold change over control ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF562CIX, ENCFF894PHG 1271315335 ENCODE Processing Pipeline 1e1c9004cfe49c8dead5b823a97b0145 https://www.encodeproject.org/files/ENCFF976WZF/@@download/ENCFF976WZF.bigWig GRCh38 released antibody characterized with exemption ENCFF258PII bigBed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF932CWN 13766560 ENCODE Processing Pipeline 8ba3ae36ba0eefdac70081fdfbf8e491 https://www.encodeproject.org/files/ENCFF258PII/@@download/ENCFF258PII.bigBed GRCh38 released antibody characterized with exemption ENCFF932CWN bed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF562CIX, ENCFF894PHG 6710573 ENCODE Processing Pipeline 539ae5cd376ca4837dc1e7a9f8e34558 https://www.encodeproject.org/files/ENCFF932CWN/@@download/ENCFF932CWN.bed.gz GRCh38 released antibody characterized with exemption ENCFF067XSU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF716XFO 1251820 ENCODE Processing Pipeline f7389d1ec9611a7da0b5a980d0bfe639 https://www.encodeproject.org/files/ENCFF067XSU/@@download/ENCFF067XSU.bigBed GRCh38 released antibody characterized with exemption ENCFF716XFO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF932CWN 755270 ENCODE Processing Pipeline 37396eef07b3a75d56368746b1e59ade https://www.encodeproject.org/files/ENCFF716XFO/@@download/ENCFF716XFO.bed.gz GRCh38 released antibody characterized with exemption ENCFF000WPW bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WQF 182529265 Michael Snyder, Stanford 921e637680fe056cdd3b7416377a11fb https://www.encodeproject.org/files/ENCFF000WPW/@@download/ENCFF000WPW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPX bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WQM 746674848 Michael Snyder, Stanford 55fced8ec54055c170352fe83a56ab06 https://www.encodeproject.org/files/ENCFF000WPX/@@download/ENCFF000WPX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPY bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WQJ 167800708 Michael Snyder, Stanford c864634ad6de520e5f3ffd39de3bedb8 https://www.encodeproject.org/files/ENCFF000WPY/@@download/ENCFF000WPY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPZ bigBed narrowPeak peaks ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGM 763759 Michael Snyder, Stanford 85d0466e5d610ea569f17913ba2c7b26 https://www.encodeproject.org/files/ENCFF000WPZ/@@download/ENCFF000WPZ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WQA bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WRO 623715253 Michael Snyder, Stanford 7177cce2cf52d964c1ce8d11b60483c5 https://www.encodeproject.org/files/ENCFF000WQA/@@download/ENCFF000WQA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WQE bigWig signal ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 316976057 Michael Snyder, Stanford 4e663f3b35e2be5867bcaf204cf555b0 https://www.encodeproject.org/files/ENCFF000WQE/@@download/ENCFF000WQE.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WQF fastq reads ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 148376487 Michael Snyder, Stanford d44e02889f161c26feca1b83003254c9 https://www.encodeproject.org/files/ENCFF000WQF/@@download/ENCFF000WQF.fastq.gz Illumina Genome Analyzer /files/ENCFF000WPQ/ released biological replicates with identical biosample insufficient read length ENCFF000WQJ fastq reads ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 1 28 single-ended 136920967 Michael Snyder, Stanford ffa6335434a97ea107d41ab2ff1219ae https://www.encodeproject.org/files/ENCFF000WQJ/@@download/ENCFF000WQJ.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WQM fastq reads ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 665292104 Michael Snyder, Stanford 8cb52a75367019b16c8437fbbbffa535 https://www.encodeproject.org/files/ENCFF000WQM/@@download/ENCFF000WQM.fastq.gz Illumina Genome Analyzer /files/ENCFF000WPN/ released biological replicates with identical biosample insufficient read length ENCFF000WRO fastq reads ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 508237889 Michael Snyder, Stanford b84ec356aa6154e0f591f7ae11deb512 https://www.encodeproject.org/files/ENCFF000WRO/@@download/ENCFF000WRO.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VGM bed narrowPeak peaks ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 332688 Michael Snyder, Stanford 174d831bdd0d67f967f64f1439ea1848 https://www.encodeproject.org/files/ENCFF001VGM/@@download/ENCFF001VGM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CQO bed narrowPeak optimal idr thresholded peaks ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 442401 ENCODE Consortium Analysis Working Group 87a3e84716a5e7e42409341883808bda https://www.encodeproject.org/files/ENCFF002CQO/@@download/ENCFF002CQO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF171LWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQO 1280501 ENCODE Consortium d326e59e8c48da9a913d5fc94ad9527d https://www.encodeproject.org/files/ENCFF171LWV/@@download/ENCFF171LWV.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF572PHT fastq reads ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 1 100 paired-ended 1 ENCFF379BKC 1502449394 Michael Snyder, Stanford cb468b3336bc5e7ef8f91e565fd20ae6 SRA:SRR6213895 https://www.encodeproject.org/files/ENCFF572PHT/@@download/ENCFF572PHT.fastq.gz Illumina HiSeq 2000 /files/ENCFF586GNU/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF379BKC fastq reads ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 1 100 paired-ended 2 ENCFF572PHT 1547103332 Michael Snyder, Stanford 2975c02f5475399b5ff2bae67a3497d6 SRA:SRR6213895 https://www.encodeproject.org/files/ENCFF379BKC/@@download/ENCFF379BKC.fastq.gz Illumina HiSeq 2000 /files/ENCFF876IGQ/ released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF320GZV bam unfiltered alignments ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 100 ENCFF379BKC, ENCFF572PHT, ENCFF807MUK 3221942024 ENCODE Processing Pipeline abe2f06828554302279e8ac91f47d69b https://www.encodeproject.org/files/ENCFF320GZV/@@download/ENCFF320GZV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF945BJC bam unfiltered alignments ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 100 ENCFF379BKC, ENCFF572PHT, ENCFF643CGH 3222143258 ENCODE Processing Pipeline afd165d2a352415801f48daede085c94 https://www.encodeproject.org/files/ENCFF945BJC/@@download/ENCFF945BJC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF068GBU bam alignments ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 100 ENCFF379BKC, ENCFF572PHT, ENCFF643CGH 2205653343 ENCODE Processing Pipeline d681837b40bc4b847516269d71d8a788 https://www.encodeproject.org/files/ENCFF068GBU/@@download/ENCFF068GBU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF985JPM bam alignments ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 100 ENCFF379BKC, ENCFF572PHT, ENCFF807MUK 2201956119 ENCODE Processing Pipeline 69ca361ed14b76e888106d0894d0fea6 https://www.encodeproject.org/files/ENCFF985JPM/@@download/ENCFF985JPM.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF170ZCC bigWig fold change over control ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF592HGH, ENCFF985JPM 703363047 ENCODE Processing Pipeline ee6c3835132097873b4965b518523a63 https://www.encodeproject.org/files/ENCFF170ZCC/@@download/ENCFF170ZCC.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF541FYJ bigWig signal p-value ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF592HGH, ENCFF985JPM 878487076 ENCODE Processing Pipeline 597f5f68e8e1bff65f1f71dcd72e2e01 https://www.encodeproject.org/files/ENCFF541FYJ/@@download/ENCFF541FYJ.bigWig hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF952EWM bigBed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF873BHU 11184183 ENCODE Processing Pipeline 85e8f5a743db3edbb7bb4700e9486a87 https://www.encodeproject.org/files/ENCFF952EWM/@@download/ENCFF952EWM.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF733VAF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF001TDO, ENCFF873BHU 122407 ENCODE Processing Pipeline d127cae97d80326bd6656e62227353fa https://www.encodeproject.org/files/ENCFF733VAF/@@download/ENCFF733VAF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF682CFD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF733VAF 284090 ENCODE Processing Pipeline 11eb43bb0d433e5f4afe2bb1d90cfc8a https://www.encodeproject.org/files/ENCFF682CFD/@@download/ENCFF682CFD.bigBed hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF873BHU bed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF592HGH, ENCFF985JPM 4832031 ENCODE Processing Pipeline 61a2fd11b3639d9c0df47240e44f5e6c https://www.encodeproject.org/files/ENCFF873BHU/@@download/ENCFF873BHU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF152QJO bigWig signal p-value ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF068GBU, ENCFF868OFG 738491278 ENCODE Processing Pipeline 568c1542679612a7f13a4105b82366de https://www.encodeproject.org/files/ENCFF152QJO/@@download/ENCFF152QJO.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF205ERN bigBed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF843BCC 11192428 ENCODE Processing Pipeline 2e25078872b041a7a5bbd5649ea1badc https://www.encodeproject.org/files/ENCFF205ERN/@@download/ENCFF205ERN.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF836USZ bigWig fold change over control ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF068GBU, ENCFF868OFG 710257818 ENCODE Processing Pipeline c26d222174f4b053d55f315dfaf91129 https://www.encodeproject.org/files/ENCFF836USZ/@@download/ENCFF836USZ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF077AQQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF846VQK 277937 ENCODE Processing Pipeline a0f5f7e148947566b54d1d7f0afcb238 https://www.encodeproject.org/files/ENCFF077AQQ/@@download/ENCFF077AQQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF843BCC bed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF068GBU, ENCFF868OFG 4834371 ENCODE Processing Pipeline 4e9b9b564607e6d233610408d833b864 https://www.encodeproject.org/files/ENCFF843BCC/@@download/ENCFF843BCC.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF846VQK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF419RSJ, ENCFF843BCC 116917 ENCODE Processing Pipeline a3f2a715a5b5a1b24df65587b63db29d https://www.encodeproject.org/files/ENCFF846VQK/@@download/ENCFF846VQK.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF001HTC bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTO 707533446 John Stamatoyannopoulos, UW 47b33c89d7dcc58067550c7c28796794 https://www.encodeproject.org/files/ENCFF001HTC/@@download/ENCFF001HTC.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTD bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTP 502580289 John Stamatoyannopoulos, UW 104368a2b940985778cd70e72a83005a https://www.encodeproject.org/files/ENCFF001HTD/@@download/ENCFF001HTD.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTE bigBed broadPeak hotspots ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XSR 5651862 John Stamatoyannopoulos, UW 2eb564cf9e3309f0311e47b38b98a082 https://www.encodeproject.org/files/ENCFF001HTE/@@download/ENCFF001HTE.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTF bigBed broadPeak hotspots ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSS 3100913 John Stamatoyannopoulos, UW 39cdec2c6cc7939150e5de662c8edac1 https://www.encodeproject.org/files/ENCFF001HTF/@@download/ENCFF001HTF.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTG bigBed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XST 1439192 John Stamatoyannopoulos, UW c4bcead14458eaa870b1449037663667 https://www.encodeproject.org/files/ENCFF001HTG/@@download/ENCFF001HTG.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTH bigBed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSU 879193 John Stamatoyannopoulos, UW 69917f58e3a976b39adb6913133be503 https://www.encodeproject.org/files/ENCFF001HTH/@@download/ENCFF001HTH.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTI bigWig raw signal ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTC 134296008 John Stamatoyannopoulos, UW 0290f47c68f51e4cfb256fb752cf3859 https://www.encodeproject.org/files/ENCFF001HTI/@@download/ENCFF001HTI.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTL bigWig raw signal ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 76946508 John Stamatoyannopoulos, UW 808fadd7b9494f469cd3c780fab77ee4 https://www.encodeproject.org/files/ENCFF001HTL/@@download/ENCFF001HTL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTO fastq reads ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1155905057 John Stamatoyannopoulos, UW b4f01922bbbc3dbfc3687bac5c097752 https://www.encodeproject.org/files/ENCFF001HTO/@@download/ENCFF001HTO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HTT/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTP fastq reads ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 954274346 John Stamatoyannopoulos, UW a3b5eb7e3dd8bd0854b2cda6453a3859 https://www.encodeproject.org/files/ENCFF001HTP/@@download/ENCFF001HTP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HTT/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSR bed broadPeak hotspots ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTC 3331643 John Stamatoyannopoulos, UW 0f3c15c9399e988b5b4e44a1c6d84cae https://www.encodeproject.org/files/ENCFF001XSR/@@download/ENCFF001XSR.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSS bed broadPeak hotspots ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 2204855 John Stamatoyannopoulos, UW cf9e9cf3566b5a1e00c40cd0e5cc2d25 https://www.encodeproject.org/files/ENCFF001XSS/@@download/ENCFF001XSS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XST bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTC 862203 John Stamatoyannopoulos, UW e8332ac71efe7497fe88b557ce628c9c https://www.encodeproject.org/files/ENCFF001XST/@@download/ENCFF001XST.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 601656 John Stamatoyannopoulos, UW ac9eb0f49655b416b767f25be87d0f8b https://www.encodeproject.org/files/ENCFF001XSU/@@download/ENCFF001XSU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF002DDJ bed narrowPeak optimal idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HTC, ENCFF001HTD 869756 ENCODE Consortium Analysis Working Group 8e9f23cdfc27292f8fc0f0b302cd296a https://www.encodeproject.org/files/ENCFF002DDJ/@@download/ENCFF002DDJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF395TEX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDJ 1798726 ENCODE Consortium 77e330390d944ea154ac2aeea69c4ebf https://www.encodeproject.org/files/ENCFF395TEX/@@download/ENCFF395TEX.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF194JHV bam unfiltered alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTP, ENCFF643CGH 949180423 ENCODE Processing Pipeline c841d6c1913cc1ff2b39c64b4d2f8bb1 https://www.encodeproject.org/files/ENCFF194JHV/@@download/ENCFF194JHV.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF081HVQ bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HTO, ENCFF643CGH 597731784 ENCODE Processing Pipeline 07f9ceb669ce1bbfed2f9297f1efd4c1 https://www.encodeproject.org/files/ENCFF081HVQ/@@download/ENCFF081HVQ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF494VZW bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HTP, ENCFF643CGH 249557976 ENCODE Processing Pipeline aed92b2a66e0bf7405ea28c2af55d38d https://www.encodeproject.org/files/ENCFF494VZW/@@download/ENCFF494VZW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF083YOH bam unfiltered alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTO, ENCFF643CGH 1243865556 ENCODE Processing Pipeline 0dcc149063933b0e6b5f204d40350834 https://www.encodeproject.org/files/ENCFF083YOH/@@download/ENCFF083YOH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF133LFA bigWig signal p-value ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF081HVQ, ENCFF873PSH 279714575 ENCODE Processing Pipeline 76fb016c5df1424a2269f1d7b6bd2297 https://www.encodeproject.org/files/ENCFF133LFA/@@download/ENCFF133LFA.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF675GVW bigWig fold change over control ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF081HVQ, ENCFF494VZW, ENCFF873PSH 297953148 ENCODE Processing Pipeline bbba77a6e169b37667624fe6080e1d5b https://www.encodeproject.org/files/ENCFF675GVW/@@download/ENCFF675GVW.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF822RTP bigWig fold change over control ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF081HVQ, ENCFF873PSH 220555415 ENCODE Processing Pipeline 3bf583f8d44bd1c3ae2d18371a2dc9e7 https://www.encodeproject.org/files/ENCFF822RTP/@@download/ENCFF822RTP.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF963FRG bigBed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF016NHU 5559082 ENCODE Processing Pipeline 39d37ef9d2ef99a9c21bebf08e755ef3 https://www.encodeproject.org/files/ENCFF963FRG/@@download/ENCFF963FRG.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF769QYS bigWig signal p-value ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF494VZW, ENCFF873PSH 240427713 ENCODE Processing Pipeline e6b4722f667e2b93996e0bae3f3f1518 https://www.encodeproject.org/files/ENCFF769QYS/@@download/ENCFF769QYS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF221XPQ bigWig signal p-value ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF081HVQ, ENCFF494VZW, ENCFF873PSH 317717550 ENCODE Processing Pipeline b020094591eeeca27477ade4af49b5fa https://www.encodeproject.org/files/ENCFF221XPQ/@@download/ENCFF221XPQ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF248VAH bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF081HVQ, ENCFF873PSH 4106246 ENCODE Processing Pipeline 4836dbceb7f74afa2326b6f2eff23889 https://www.encodeproject.org/files/ENCFF248VAH/@@download/ENCFF248VAH.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF075EWP bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF081HVQ, ENCFF494VZW, ENCFF873PSH 4464865 ENCODE Processing Pipeline b8db5b9fc22c7a7e92462c324c336ed6 https://www.encodeproject.org/files/ENCFF075EWP/@@download/ENCFF075EWP.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF228PMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF843VHC 1228936 ENCODE Processing Pipeline 38fcf88a696eac4655b388f65830c0ca https://www.encodeproject.org/files/ENCFF228PMT/@@download/ENCFF228PMT.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF446KLG bigWig fold change over control ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF494VZW, ENCFF873PSH 109323484 ENCODE Processing Pipeline 090a8ea86a10f65586bb1d1ffbf07ba0 https://www.encodeproject.org/files/ENCFF446KLG/@@download/ENCFF446KLG.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF016NHU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF494VZW, ENCFF873PSH 2729967 ENCODE Processing Pipeline cb4a3bfb3a222713f2274869d9bb937f https://www.encodeproject.org/files/ENCFF016NHU/@@download/ENCFF016NHU.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF636XQY bigBed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF248VAH 10046531 ENCODE Processing Pipeline b5e788f7b5dc44e2f203429965c6d17d https://www.encodeproject.org/files/ENCFF636XQY/@@download/ENCFF636XQY.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF832NML bigBed narrowPeak conservative idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF389ELU 1130535 ENCODE Processing Pipeline f30e84f10ac85b3889541e039aa4bfd6 https://www.encodeproject.org/files/ENCFF832NML/@@download/ENCFF832NML.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF682XBS bigBed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF075EWP 10642680 ENCODE Processing Pipeline 387ed098f97a8f4b7cd264d5acf357dc https://www.encodeproject.org/files/ENCFF682XBS/@@download/ENCFF682XBS.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF389ELU bed narrowPeak conservative idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF016NHU, ENCFF075EWP, ENCFF248VAH, ENCFF419RSJ 625017 ENCODE Processing Pipeline eab4a62407ecb1f4025aeed2f8011c85 https://www.encodeproject.org/files/ENCFF389ELU/@@download/ENCFF389ELU.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF843VHC bed narrowPeak optimal idr thresholded peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF016NHU, ENCFF075EWP, ENCFF248VAH, ENCFF419RSJ 702428 ENCODE Processing Pipeline 58222b6f11836bebf802919942dd9933 https://www.encodeproject.org/files/ENCFF843VHC/@@download/ENCFF843VHC.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF000VUV bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 1 553428325 Michael Snyder, Stanford 66e0264d503b6a370d0e7b6bc8812c88 https://www.encodeproject.org/files/ENCFF000VUV/@@download/ENCFF000VUV.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF000VUX bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEG 1243478 Michael Snyder, Stanford bcd7eda74dc623b5b73a358defe57d7b https://www.encodeproject.org/files/ENCFF000VUX/@@download/ENCFF000VUX.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000VUY fastq reads ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1063801937 Michael Snyder, Stanford 64198a71c421529f6a5877c9d2b10c97 https://www.encodeproject.org/files/ENCFF000VUY/@@download/ENCFF000VUY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000VVA fastq reads ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1091220409 Michael Snyder, Stanford 74541ffd7e5da51feed0a7d7814300f3 https://www.encodeproject.org/files/ENCFF000VVA/@@download/ENCFF000VVA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000VVC bigWig signal ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 415057874 Michael Snyder, Stanford 34b6c917cf553e92c29cbdce45d358ff https://www.encodeproject.org/files/ENCFF000VVC/@@download/ENCFF000VVC.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF000VVD bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 1 581628302 Michael Snyder, Stanford 260dec792f69ad792949d633372be1a3 https://www.encodeproject.org/files/ENCFF000VVD/@@download/ENCFF000VVD.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF001VEG bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 537303 Michael Snyder, Stanford 063c0a3aaaeb7ad1a3f0d5ef6aff0efa https://www.encodeproject.org/files/ENCFF001VEG/@@download/ENCFF001VEG.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF002COT bed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 149104 ENCODE Consortium Analysis Working Group 6aa06ce60d16b95212716e13ef16917d https://www.encodeproject.org/files/ENCFF002COT/@@download/ENCFF002COT.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF150CIG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COT 455463 ENCODE Consortium 26ee6947bf9ef07e8bf5a8041c027d7f https://www.encodeproject.org/files/ENCFF150CIG/@@download/ENCFF150CIG.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF156QYK bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF643CGH 1093234879 ENCODE Processing Pipeline cfe996548661bc53302109ac852f4c57 https://www.encodeproject.org/files/ENCFF156QYK/@@download/ENCFF156QYK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF211VKF bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF643CGH 698249290 ENCODE Processing Pipeline 6626faa93046e45f91b9749e7720e5f4 https://www.encodeproject.org/files/ENCFF211VKF/@@download/ENCFF211VKF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF766YFE bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF643CGH 1078433314 ENCODE Processing Pipeline 0736bc51209c86208fe553042bd22da0 https://www.encodeproject.org/files/ENCFF766YFE/@@download/ENCFF766YFE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF784XUE bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF643CGH 678598622 ENCODE Processing Pipeline 5d5f013d724c685dac6506f9068010b7 https://www.encodeproject.org/files/ENCFF784XUE/@@download/ENCFF784XUE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF199VLV bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF807MUK 1075381256 ENCODE Processing Pipeline f662a36be558ddc5600a3406f395dea1 https://www.encodeproject.org/files/ENCFF199VLV/@@download/ENCFF199VLV.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF556BST bam unfiltered alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF807MUK 1088782792 ENCODE Processing Pipeline b8ce5fd4a9b9bdc21031a1b9b2edf9f9 https://www.encodeproject.org/files/ENCFF556BST/@@download/ENCFF556BST.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF164TSL bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF807MUK 693109877 ENCODE Processing Pipeline 87581e2f77909f8db89dfbac2b2f9b3d https://www.encodeproject.org/files/ENCFF164TSL/@@download/ENCFF164TSL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF551AQK bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF807MUK 678769539 ENCODE Processing Pipeline 0204e0a3d6c9bc4eae742e9db7db2120 https://www.encodeproject.org/files/ENCFF551AQK/@@download/ENCFF551AQK.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF457WBU bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 3582199 ENCODE Processing Pipeline 7192241e9e8b555f465ce209223b0a77 https://www.encodeproject.org/files/ENCFF457WBU/@@download/ENCFF457WBU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF363IMU bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF457WBU 7712940 ENCODE Processing Pipeline 05558b7ea5a376162897db1b6be9db57 https://www.encodeproject.org/files/ENCFF363IMU/@@download/ENCFF363IMU.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF343YGH bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO, ENCFF551AQK 153662802 ENCODE Processing Pipeline 16314abc714f93499ab6953f7e585bb1 https://www.encodeproject.org/files/ENCFF343YGH/@@download/ENCFF343YGH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF290YYN bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF304FFB 10385775 ENCODE Processing Pipeline d09923022192655d064e886fea6e247d https://www.encodeproject.org/files/ENCFF290YYN/@@download/ENCFF290YYN.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF009GUG bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 177767543 ENCODE Processing Pipeline d9fa3b5c171df705c27620c0225df8a8 https://www.encodeproject.org/files/ENCFF009GUG/@@download/ENCFF009GUG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF979FNK bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO, ENCFF551AQK 520648844 ENCODE Processing Pipeline ecbdb8e27ecc687e721b55d4e708c35d https://www.encodeproject.org/files/ENCFF979FNK/@@download/ENCFF979FNK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF434DKI bed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF304FFB, ENCFF457WBU, ENCFF839VSW 112213 ENCODE Processing Pipeline 68ab5d79566bb94990cc8bbccb060ac7 https://www.encodeproject.org/files/ENCFF434DKI/@@download/ENCFF434DKI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF556JBS bed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF304FFB, ENCFF457WBU, ENCFF839VSW 137008 ENCODE Processing Pipeline 8a3f9f934ad6fb0dc377fb2d047121b3 https://www.encodeproject.org/files/ENCFF556JBS/@@download/ENCFF556JBS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF326DLG bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 72500952 ENCODE Processing Pipeline b8304d774b5277dd55754a366f5a5329 https://www.encodeproject.org/files/ENCFF326DLG/@@download/ENCFF326DLG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF487SSS bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 240435669 ENCODE Processing Pipeline cec7fcbb6f63fddaf8da5b2080b4f2da https://www.encodeproject.org/files/ENCFF487SSS/@@download/ENCFF487SSS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF229LMM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF434DKI 260457 ENCODE Processing Pipeline a3a0457dafa6ac0069a5b929710b72fd https://www.encodeproject.org/files/ENCFF229LMM/@@download/ENCFF229LMM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF895DUB bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 300180779 ENCODE Processing Pipeline 14e6c478eaf600db19c4f85f28b33d9c https://www.encodeproject.org/files/ENCFF895DUB/@@download/ENCFF895DUB.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF008WDX bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF839VSW 11056137 ENCODE Processing Pipeline cecaac2f0ba31a854d9d864ffbbb0090 https://www.encodeproject.org/files/ENCFF008WDX/@@download/ENCFF008WDX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF304FFB bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 4310528 ENCODE Processing Pipeline 702bb44e799b0f61b777af58d1f4cf64 https://www.encodeproject.org/files/ENCFF304FFB/@@download/ENCFF304FFB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF839VSW bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO, ENCFF551AQK 4653531 ENCODE Processing Pipeline c85db1da917321d9b2d8bd75255abef6 https://www.encodeproject.org/files/ENCFF839VSW/@@download/ENCFF839VSW.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF632SRN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF556JBS 299102 ENCODE Processing Pipeline 3d7bab4b9f116509889032e2ed535ef3 https://www.encodeproject.org/files/ENCFF632SRN/@@download/ENCFF632SRN.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF308NKV bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS, ENCFF784XUE 518652653 ENCODE Processing Pipeline 51981605cc22fb5ebbb7323a83c67d67 https://www.encodeproject.org/files/ENCFF308NKV/@@download/ENCFF308NKV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF046RZE bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF897QWE 10412267 ENCODE Processing Pipeline 5cfe30b0f7a301b43480475875c13db0 https://www.encodeproject.org/files/ENCFF046RZE/@@download/ENCFF046RZE.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF503NRF bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS 177717486 ENCODE Processing Pipeline 79a1d3be594ec2c6d531e2e3ccd6edce https://www.encodeproject.org/files/ENCFF503NRF/@@download/ENCFF503NRF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF951OBZ bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF784XUE 240311797 ENCODE Processing Pipeline 72e9647c2391acedac3d0cb7dc732a78 https://www.encodeproject.org/files/ENCFF951OBZ/@@download/ENCFF951OBZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF494KAM bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS, ENCFF784XUE 153625432 ENCODE Processing Pipeline fc353d51f00c240dc2117c923f828be4 https://www.encodeproject.org/files/ENCFF494KAM/@@download/ENCFF494KAM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF897QWE bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS 4337491 ENCODE Processing Pipeline 29d45727b2bbac544b81fb5ac7353070 https://www.encodeproject.org/files/ENCFF897QWE/@@download/ENCFF897QWE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF098XFA bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS, ENCFF784XUE 4653213 ENCODE Processing Pipeline 59fc89f6047ba6e0076ce0a710f36546 https://www.encodeproject.org/files/ENCFF098XFA/@@download/ENCFF098XFA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF287DEM bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF098XFA 11060222 ENCODE Processing Pipeline ca0b07f62e8c219f5830cfcd43374d6c https://www.encodeproject.org/files/ENCFF287DEM/@@download/ENCFF287DEM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF350TKU bed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF098XFA, ENCFF317BNJ, ENCFF419RSJ, ENCFF897QWE 112681 ENCODE Processing Pipeline 4288c8eb9e0597e4544c6c37097a6323 https://www.encodeproject.org/files/ENCFF350TKU/@@download/ENCFF350TKU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF871ZOA bigBed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF317BNJ 7629008 ENCODE Processing Pipeline 00dc499f1d51a3e5f852310f3b2a3b08 https://www.encodeproject.org/files/ENCFF871ZOA/@@download/ENCFF871ZOA.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF198QDA bigWig fold change over control ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211VKF, ENCFF477ZKJ, ENCFF710SMS 298311452 ENCODE Processing Pipeline a2c617ccb4763e69cb7ba563060ce34f https://www.encodeproject.org/files/ENCFF198QDA/@@download/ENCFF198QDA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF577VFY bigWig signal p-value ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF784XUE 72464618 ENCODE Processing Pipeline 74e3a639dd6f39d4d482928319f76883 https://www.encodeproject.org/files/ENCFF577VFY/@@download/ENCFF577VFY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF317BNJ bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF784XUE 3585270 ENCODE Processing Pipeline 84f943300e0b1e2e8e55be4a20ab41a6 https://www.encodeproject.org/files/ENCFF317BNJ/@@download/ENCFF317BNJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF432AQP bed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF098XFA, ENCFF317BNJ, ENCFF419RSJ, ENCFF897QWE 146581 ENCODE Processing Pipeline fbb563270ff1dc6948f5e8b396636079 https://www.encodeproject.org/files/ENCFF432AQP/@@download/ENCFF432AQP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF264FWY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF432AQP 312321 ENCODE Processing Pipeline 062b9066d1f55e595494d9a9af702822 https://www.encodeproject.org/files/ENCFF264FWY/@@download/ENCFF264FWY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF173WFH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF350TKU 262068 ENCODE Processing Pipeline 313edb8884de768926c1ea2f7cf587a0 https://www.encodeproject.org/files/ENCFF173WFH/@@download/ENCFF173WFH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000PIG bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PIT 1066164995 Richard Myers, HAIB 33b725e2093086d17ce547f8cec4fd40 https://www.encodeproject.org/files/ENCFF000PIG/@@download/ENCFF000PIG.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PIH bigBed broadPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFY 291359 Richard Myers, HAIB d4fe996d20b901452f110dcf3ad495b8 https://www.encodeproject.org/files/ENCFF000PIH/@@download/ENCFF000PIH.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PII bigBed broadPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFZ 1441383 Richard Myers, HAIB 1afff2651e774c01c534d2c3880ae277 https://www.encodeproject.org/files/ENCFF000PII/@@download/ENCFF000PII.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PIK bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PIX 1452978125 Richard Myers, HAIB 1eb2b3b1cb2c8cdd59449663356082c6 https://www.encodeproject.org/files/ENCFF000PIK/@@download/ENCFF000PIK.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PIL bigWig raw signal ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 1 20900705 Richard Myers, HAIB f2013a0bde8b3f6390d06be1520ccb0c https://www.encodeproject.org/files/ENCFF000PIL/@@download/ENCFF000PIL.bigWig hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PIN bigWig raw signal ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 1 62757232 Richard Myers, HAIB 0fbabca07083d671b316b0dbc383124a https://www.encodeproject.org/files/ENCFF000PIN/@@download/ENCFF000PIN.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PIT fastq reads ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1372327574 Richard Myers, HAIB eea37e5bc31b00f24e3adf835cc59422 https://www.encodeproject.org/files/ENCFF000PIT/@@download/ENCFF000PIT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000PIX fastq reads ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1488538075 Richard Myers, HAIB 88d3520ad57d8498495b293578bbbfed https://www.encodeproject.org/files/ENCFF000PIX/@@download/ENCFF000PIX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF001UFY bed broadPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 1 147760 Richard Myers, HAIB 40e689b797475c7017681e89379425f0 https://www.encodeproject.org/files/ENCFF001UFY/@@download/ENCFF001UFY.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF001UFZ bed broadPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 1 1017974 Richard Myers, HAIB f6952c75da9e1b45d80e491957fb5738 https://www.encodeproject.org/files/ENCFF001UFZ/@@download/ENCFF001UFZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF002CKK bed narrowPeak optimal idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 809761 ENCODE Consortium Analysis Working Group 5840d498651082c22423bec2c0e12365 https://www.encodeproject.org/files/ENCFF002CKK/@@download/ENCFF002CKK.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF601TBX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKK 1685076 ENCODE Consortium 50a4e7d1b7b7740893d567bde10fc065 https://www.encodeproject.org/files/ENCFF601TBX/@@download/ENCFF601TBX.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF753YDG bam unfiltered alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIT, ENCFF643CGH 1511372637 ENCODE Processing Pipeline e49ed92684437e01572704e671243925 https://www.encodeproject.org/files/ENCFF753YDG/@@download/ENCFF753YDG.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF576IPP bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIT, ENCFF643CGH 305648366 ENCODE Processing Pipeline 8edcde826c0022c81729d1c40dede8fd https://www.encodeproject.org/files/ENCFF576IPP/@@download/ENCFF576IPP.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF933ITF bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIX, ENCFF643CGH 1154832818 ENCODE Processing Pipeline 12800ef7bff25b722667920f9a97c1ea https://www.encodeproject.org/files/ENCFF933ITF/@@download/ENCFF933ITF.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF078CHP bam unfiltered alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIX, ENCFF643CGH 1881186199 ENCODE Processing Pipeline c1ed4d8ed10735c42fb845889d6942db https://www.encodeproject.org/files/ENCFF078CHP/@@download/ENCFF078CHP.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF649KHR bam unfiltered alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIT, ENCFF807MUK 1509611295 ENCODE Processing Pipeline 1c8c192d867f819fec341683453cdb26 https://www.encodeproject.org/files/ENCFF649KHR/@@download/ENCFF649KHR.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF771TCH bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIT, ENCFF807MUK 305723292 ENCODE Processing Pipeline 0c037da151b1947d7cad7bfdf361c4b5 https://www.encodeproject.org/files/ENCFF771TCH/@@download/ENCFF771TCH.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF194PQZ bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIX, ENCFF807MUK 1155280736 ENCODE Processing Pipeline f07273c0f0242afcfc7c704551c4a16a https://www.encodeproject.org/files/ENCFF194PQZ/@@download/ENCFF194PQZ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF134QDF bam unfiltered alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIX, ENCFF807MUK 1876010612 ENCODE Processing Pipeline 36a37530edcf8a8bf07eaad00ac74008 https://www.encodeproject.org/files/ENCFF134QDF/@@download/ENCFF134QDF.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF504PVA bigWig signal p-value ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF576IPP 318096523 ENCODE Processing Pipeline 1fc79097f1165fae22dfbfe3bdae136b https://www.encodeproject.org/files/ENCFF504PVA/@@download/ENCFF504PVA.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF129HNH bigWig signal p-value ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF933ITF 576924681 ENCODE Processing Pipeline 897f868a0e54234563dc79f1689712fd https://www.encodeproject.org/files/ENCFF129HNH/@@download/ENCFF129HNH.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF561BPO bigWig signal p-value ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF576IPP, ENCFF933ITF 589008911 ENCODE Processing Pipeline f545c01833058ab1c03e00fd33223962 https://www.encodeproject.org/files/ENCFF561BPO/@@download/ENCFF561BPO.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF511UEV bigWig fold change over control ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF576IPP 211984360 ENCODE Processing Pipeline abe457f3f0bf43468a19236901ff356f https://www.encodeproject.org/files/ENCFF511UEV/@@download/ENCFF511UEV.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF108WYP bigWig fold change over control ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF933ITF 495574115 ENCODE Processing Pipeline e82212692dfe61c3dd3be4f0b3a3d0b6 https://www.encodeproject.org/files/ENCFF108WYP/@@download/ENCFF108WYP.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF888KEW bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF933ITF 5658409 ENCODE Processing Pipeline 3ba4c0d889d12351d98cf0c9a7bc39ad https://www.encodeproject.org/files/ENCFF888KEW/@@download/ENCFF888KEW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF626IVY bigWig fold change over control ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF576IPP, ENCFF933ITF 591041108 ENCODE Processing Pipeline ef6e8d9c80172cdec4f0a8a1ca04dde7 https://www.encodeproject.org/files/ENCFF626IVY/@@download/ENCFF626IVY.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF069BYU bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF576IPP, ENCFF933ITF 5860985 ENCODE Processing Pipeline d687ccb5971f0e1a95b38713982ec839 https://www.encodeproject.org/files/ENCFF069BYU/@@download/ENCFF069BYU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF400VLN bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF576IPP 4366806 ENCODE Processing Pipeline db2248196da1aef2691efbbc0ce66906 https://www.encodeproject.org/files/ENCFF400VLN/@@download/ENCFF400VLN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF437IJR bigBed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF400VLN 10650338 ENCODE Processing Pipeline 4f67b4d49812473889a0dbd43d4d4d69 https://www.encodeproject.org/files/ENCFF437IJR/@@download/ENCFF437IJR.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF190ZUF bigBed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069BYU 11378072 ENCODE Processing Pipeline 4782150735ddbe2077292548603c592f https://www.encodeproject.org/files/ENCFF190ZUF/@@download/ENCFF190ZUF.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF184NAC bed narrowPeak optimal idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069BYU, ENCFF400VLN, ENCFF419RSJ, ENCFF888KEW 814091 ENCODE Processing Pipeline e688e2befa08fc9a26117f772428ff3b https://www.encodeproject.org/files/ENCFF184NAC/@@download/ENCFF184NAC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF246NLC bigBed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF888KEW 11390868 ENCODE Processing Pipeline d5d1bffd9784d6dde84cc8878c0c6413 https://www.encodeproject.org/files/ENCFF246NLC/@@download/ENCFF246NLC.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF010NID bed narrowPeak conservative idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF069BYU, ENCFF400VLN, ENCFF419RSJ, ENCFF888KEW 290074 ENCODE Processing Pipeline 2c61f2560a6a75e98d4291638e172426 https://www.encodeproject.org/files/ENCFF010NID/@@download/ENCFF010NID.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF829SRC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF010NID 622372 ENCODE Processing Pipeline 5edf3c9f2cc7a7d5107f2dba6dcbb559 https://www.encodeproject.org/files/ENCFF829SRC/@@download/ENCFF829SRC.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF362WNO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184NAC 1669402 ENCODE Processing Pipeline c1c5cbfc20e2d5e796279b3ff7e4b0f5 https://www.encodeproject.org/files/ENCFF362WNO/@@download/ENCFF362WNO.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF550ZLT bigWig signal p-value ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF771TCH 383584212 ENCODE Processing Pipeline 89bc87bb35fb9673db2a0e9a973a9ec8 https://www.encodeproject.org/files/ENCFF550ZLT/@@download/ENCFF550ZLT.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF058RHW bigWig fold change over control ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF771TCH 214825207 ENCODE Processing Pipeline 14252efcfc491f442a2b8aaf2750cff1 https://www.encodeproject.org/files/ENCFF058RHW/@@download/ENCFF058RHW.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF850ZXW bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF194PQZ, ENCFF346RZT 5658800 ENCODE Processing Pipeline 2864840f71c2e82e706788efcd3da734 https://www.encodeproject.org/files/ENCFF850ZXW/@@download/ENCFF850ZXW.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF320WZQ bigWig signal p-value ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF194PQZ, ENCFF346RZT 576986949 ENCODE Processing Pipeline 7b61f069353890b02c8c1dbf70568b1e https://www.encodeproject.org/files/ENCFF320WZQ/@@download/ENCFF320WZQ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF638XLJ bigWig signal p-value ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF194PQZ, ENCFF346RZT, ENCFF771TCH 589147847 ENCODE Processing Pipeline bbfc85bb543326479faa7e74eaedb353 https://www.encodeproject.org/files/ENCFF638XLJ/@@download/ENCFF638XLJ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF989CEA bigWig fold change over control ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF194PQZ, ENCFF346RZT 501377785 ENCODE Processing Pipeline f1078b29fb37b16f7b0e7a83c0523cd9 https://www.encodeproject.org/files/ENCFF989CEA/@@download/ENCFF989CEA.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF379JAQ bigWig fold change over control ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF194PQZ, ENCFF346RZT, ENCFF771TCH 596029750 ENCODE Processing Pipeline d4ac64f318811b417662a5a7356f00a6 https://www.encodeproject.org/files/ENCFF379JAQ/@@download/ENCFF379JAQ.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF782XTI bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF194PQZ, ENCFF346RZT, ENCFF771TCH 5860881 ENCODE Processing Pipeline 6a29f78e0fc0fc003ec970f8c3997e73 https://www.encodeproject.org/files/ENCFF782XTI/@@download/ENCFF782XTI.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF332SLC bigBed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF767MET 10676811 ENCODE Processing Pipeline 284b3dfc8480f7cebf4e661197ec427d https://www.encodeproject.org/files/ENCFF332SLC/@@download/ENCFF332SLC.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF367JCR bigBed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF850ZXW 11390802 ENCODE Processing Pipeline 3d10060a552e0d14cdd7916630790e18 https://www.encodeproject.org/files/ENCFF367JCR/@@download/ENCFF367JCR.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF408WIH bigBed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF782XTI 11379656 ENCODE Processing Pipeline 650a0c3ea8e736c6d3c7f68b28268114 https://www.encodeproject.org/files/ENCFF408WIH/@@download/ENCFF408WIH.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF767MET bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF771TCH 4392167 ENCODE Processing Pipeline 395f72d1643b1534682328210707a4da https://www.encodeproject.org/files/ENCFF767MET/@@download/ENCFF767MET.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF024BYK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF931IXE 623779 ENCODE Processing Pipeline f2115dd372f5830457079767d023aa7b https://www.encodeproject.org/files/ENCFF024BYK/@@download/ENCFF024BYK.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF826PLW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002ROJ 1681628 ENCODE Processing Pipeline e3399356cdc5a6034b0f0803d7444c0f https://www.encodeproject.org/files/ENCFF826PLW/@@download/ENCFF826PLW.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF931IXE bed narrowPeak conservative idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF767MET, ENCFF782XTI, ENCFF850ZXW 290989 ENCODE Processing Pipeline 9b402eb0c44262e908e1f37c54298e19 https://www.encodeproject.org/files/ENCFF931IXE/@@download/ENCFF931IXE.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF002ROJ bed narrowPeak optimal idr thresholded peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF767MET, ENCFF782XTI, ENCFF850ZXW 823038 ENCODE Processing Pipeline 5e3ca1038ebee9259751b5b2bc902c3a https://www.encodeproject.org/files/ENCFF002ROJ/@@download/ENCFF002ROJ.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF148MZQ bam unfiltered alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZW, ENCFF807MUK 1246623566 ENCODE Processing Pipeline 92c73c386dce368ecb59bf46d7c72e9d https://www.encodeproject.org/files/ENCFF148MZQ/@@download/ENCFF148MZQ.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF418KUI bam unfiltered alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZX, ENCFF807MUK 1363123340 ENCODE Processing Pipeline e44ae3cf66527764033f2e0c39d7cdd6 https://www.encodeproject.org/files/ENCFF418KUI/@@download/ENCFF418KUI.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF002DZW fastq reads ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 1008521015 Michael Snyder, Stanford 02f1a84c8ec3d2b12353fb719112cf28 https://www.encodeproject.org/files/ENCFF002DZW/@@download/ENCFF002DZW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released low read length experiment not submitted to GEO partially characterized antibody ENCFF002DZX fastq reads ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 1 36 single-ended 967195082 Michael Snyder, Stanford 0eb6f8b4682c147cb58d23ce2af5e620 https://www.encodeproject.org/files/ENCFF002DZX/@@download/ENCFF002DZX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released low read length experiment not submitted to GEO partially characterized antibody ENCFF879ZRP bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZW, ENCFF807MUK 873291636 ENCODE Processing Pipeline 046822623f362c2abea275a7a1f0ac36 https://www.encodeproject.org/files/ENCFF879ZRP/@@download/ENCFF879ZRP.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF930GJB bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZX, ENCFF807MUK 966566002 ENCODE Processing Pipeline da2b0e9c3ee5ae64d1d1af857a69abf6 https://www.encodeproject.org/files/ENCFF930GJB/@@download/ENCFF930GJB.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF205NBG bigWig signal p-value ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF425JYG, ENCFF863STQ, ENCFF879ZRP, ENCFF930GJB 1085239430 ENCODE Processing Pipeline 39c6754767a335384ac23eec8890fd55 https://www.encodeproject.org/files/ENCFF205NBG/@@download/ENCFF205NBG.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF549LHR bigWig signal p-value ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF425JYG, ENCFF930GJB 534280706 ENCODE Processing Pipeline 0e5985074a68586ed3d5da198ec732bb https://www.encodeproject.org/files/ENCFF549LHR/@@download/ENCFF549LHR.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF037KWH bigWig fold change over control ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF425JYG, ENCFF930GJB 514699099 ENCODE Processing Pipeline ffcc752ef8fd5d3e5d5d9f055a89bca9 https://www.encodeproject.org/files/ENCFF037KWH/@@download/ENCFF037KWH.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF528KMO bigWig fold change over control ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF425JYG, ENCFF863STQ, ENCFF879ZRP, ENCFF930GJB 1101045003 ENCODE Processing Pipeline a1bcd977573f2a6bc887376140a2a219 https://www.encodeproject.org/files/ENCFF528KMO/@@download/ENCFF528KMO.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF199FLQ bam unfiltered alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZW, ENCFF643CGH 1252175718 ENCODE Processing Pipeline 9f57d1d60b040f076ef0dab94c3b7030 https://www.encodeproject.org/files/ENCFF199FLQ/@@download/ENCFF199FLQ.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF767WLN bam unfiltered alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZX, ENCFF643CGH 1370210804 ENCODE Processing Pipeline 46c5b5858817ba9601e9c3c9e5124891 https://www.encodeproject.org/files/ENCFF767WLN/@@download/ENCFF767WLN.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF411JMW bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZW, ENCFF643CGH 873204021 ENCODE Processing Pipeline 94fcf4bbec9fa82de5db5ab138e066fa https://www.encodeproject.org/files/ENCFF411JMW/@@download/ENCFF411JMW.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF757MUH bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZX, ENCFF643CGH 966284638 ENCODE Processing Pipeline 8b66aab192c6692c829177c08486aa04 https://www.encodeproject.org/files/ENCFF757MUH/@@download/ENCFF757MUH.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF334YTQ bigWig signal p-value ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF411JMW, ENCFF918AJW 538527007 ENCODE Processing Pipeline 8b556044ac51460ade60d0f766fd5800 https://www.encodeproject.org/files/ENCFF334YTQ/@@download/ENCFF334YTQ.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF727GPJ bigWig signal p-value ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF757MUH, ENCFF949XNJ 565281137 ENCODE Processing Pipeline b650986dd824cb841cc8d7465490167e https://www.encodeproject.org/files/ENCFF727GPJ/@@download/ENCFF727GPJ.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF204ZNY bigWig signal p-value ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF411JMW, ENCFF757MUH, ENCFF918AJW, ENCFF949XNJ 1071166108 ENCODE Processing Pipeline 96e67f505e0e2f8f938fddd0f4f2b025 https://www.encodeproject.org/files/ENCFF204ZNY/@@download/ENCFF204ZNY.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF388IAX bigWig fold change over control ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF757MUH, ENCFF949XNJ 515622079 ENCODE Processing Pipeline 5224a72ac92db41f10b8cf485d9fccca https://www.encodeproject.org/files/ENCFF388IAX/@@download/ENCFF388IAX.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF447XHR bigWig fold change over control ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF411JMW, ENCFF918AJW 522167166 ENCODE Processing Pipeline 4c8bab766cc639d27e6072c11abe9052 https://www.encodeproject.org/files/ENCFF447XHR/@@download/ENCFF447XHR.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF506QXT bigBed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF135NPA 11062515 ENCODE Processing Pipeline af50661b13a33d1ae2a7de869d5fc805 https://www.encodeproject.org/files/ENCFF506QXT/@@download/ENCFF506QXT.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF349KEL bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF411JMW, ENCFF918AJW 4766599 ENCODE Processing Pipeline a390667ea6c46a7d17f5998298fba020 https://www.encodeproject.org/files/ENCFF349KEL/@@download/ENCFF349KEL.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF767UAO bigBed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF349KEL 10988799 ENCODE Processing Pipeline 0e9a83a751bb2346f6bdb0486635618c https://www.encodeproject.org/files/ENCFF767UAO/@@download/ENCFF767UAO.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF135NPA bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF757MUH, ENCFF949XNJ 4550171 ENCODE Processing Pipeline e10a3fcea7027aedc9be7038023f1fd3 https://www.encodeproject.org/files/ENCFF135NPA/@@download/ENCFF135NPA.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF866DHV bigWig fold change over control ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF411JMW, ENCFF757MUH, ENCFF918AJW, ENCFF949XNJ 1100001257 ENCODE Processing Pipeline 2a50c95d5f4ca09f67d6f785a1bf0d49 https://www.encodeproject.org/files/ENCFF866DHV/@@download/ENCFF866DHV.bigWig GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF158KVD bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF411JMW, ENCFF757MUH, ENCFF918AJW, ENCFF949XNJ 5997183 ENCODE Processing Pipeline 7278919bc4f34eec811e61d71ec4f5f6 https://www.encodeproject.org/files/ENCFF158KVD/@@download/ENCFF158KVD.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF202XWJ bigBed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF158KVD 11450416 ENCODE Processing Pipeline 9d420d35eb162f6ffe976be635f85973 https://www.encodeproject.org/files/ENCFF202XWJ/@@download/ENCFF202XWJ.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF310IDS bed narrowPeak optimal idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF135NPA, ENCFF158KVD, ENCFF349KEL, ENCFF419RSJ 61702 ENCODE Processing Pipeline 14503ebc13a04518c315a2dd3b791c29 https://www.encodeproject.org/files/ENCFF310IDS/@@download/ENCFF310IDS.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF820MLC bigBed narrowPeak optimal idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF310IDS 160655 ENCODE Processing Pipeline 3c70a4591668e49f473b9e863a650c86 https://www.encodeproject.org/files/ENCFF820MLC/@@download/ENCFF820MLC.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF103JEQ bed narrowPeak conservative idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF135NPA, ENCFF158KVD, ENCFF349KEL, ENCFF419RSJ 51977 ENCODE Processing Pipeline 164739a832eef088d6ecf4eb795837e1 https://www.encodeproject.org/files/ENCFF103JEQ/@@download/ENCFF103JEQ.bed.gz GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF728NDQ bigBed narrowPeak conservative idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF103JEQ 146185 ENCODE Processing Pipeline 831f53fc9d2acdd66d1f5a437125140b https://www.encodeproject.org/files/ENCFF728NDQ/@@download/ENCFF728NDQ.bigBed GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF115YCR bigWig signal p-value ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF863STQ, ENCFF879ZRP 588349281 ENCODE Processing Pipeline 6685f75784e813b385bc49f634435fd7 https://www.encodeproject.org/files/ENCFF115YCR/@@download/ENCFF115YCR.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF299HPC bigWig fold change over control ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF863STQ, ENCFF879ZRP 525283331 ENCODE Processing Pipeline 1fa432c5f45643f5cbfd35268f4ec8dd https://www.encodeproject.org/files/ENCFF299HPC/@@download/ENCFF299HPC.bigWig hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF645PAM bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF425JYG, ENCFF930GJB 4543847 ENCODE Processing Pipeline 91346d68e6b9e405fd61df6a0215c2df https://www.encodeproject.org/files/ENCFF645PAM/@@download/ENCFF645PAM.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF804YIE bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF425JYG, ENCFF863STQ, ENCFF879ZRP, ENCFF930GJB 5994728 ENCODE Processing Pipeline 00c4d75b43e1c78b90bbe92cf57a6f5b https://www.encodeproject.org/files/ENCFF804YIE/@@download/ENCFF804YIE.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF288VSN bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF863STQ, ENCFF879ZRP 4768963 ENCODE Processing Pipeline 76b9f02694dd2d51f2e31b71251c7476 https://www.encodeproject.org/files/ENCFF288VSN/@@download/ENCFF288VSN.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF506LUQ bigBed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF804YIE 11442995 ENCODE Processing Pipeline f89c3ee3af0ca4c8ac537ca315c56844 https://www.encodeproject.org/files/ENCFF506LUQ/@@download/ENCFF506LUQ.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF858YMR bigBed narrowPeak conservative idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF212CTR 144105 ENCODE Processing Pipeline bcc3c910b4d707366c7512fbe9e66322 https://www.encodeproject.org/files/ENCFF858YMR/@@download/ENCFF858YMR.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF417EOD bigBed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF288VSN 10982832 ENCODE Processing Pipeline 6c61c11ba1f43483ae3c248aa8854f7f https://www.encodeproject.org/files/ENCFF417EOD/@@download/ENCFF417EOD.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF756NKK bigBed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 ENCFF645PAM 11048331 ENCODE Processing Pipeline 78145d51da8f7d589c6177b78ff1da84 https://www.encodeproject.org/files/ENCFF756NKK/@@download/ENCFF756NKK.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF212CTR bed narrowPeak conservative idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF288VSN, ENCFF645PAM, ENCFF804YIE 50791 ENCODE Processing Pipeline d5b82b4047cfb021b547855c3bd956cd https://www.encodeproject.org/files/ENCFF212CTR/@@download/ENCFF212CTR.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF030PNS bed narrowPeak optimal idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF001TDO, ENCFF288VSN, ENCFF645PAM, ENCFF804YIE 60448 ENCODE Processing Pipeline 28f0734f811421bbe2a53db41f8ff034 https://www.encodeproject.org/files/ENCFF030PNS/@@download/ENCFF030PNS.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF494ELO bigBed narrowPeak optimal idr thresholded peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1, 3 ENCFF030PNS 158072 ENCODE Processing Pipeline e4e42de1af16e9f678c1f37a1bae4eb7 https://www.encodeproject.org/files/ENCFF494ELO/@@download/ENCFF494ELO.bigBed hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF000QNL bam alignments ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QOA 1930843307 Richard Myers, HAIB 09dcdf9ab4d7b241ac5b8e4376a871cc https://www.encodeproject.org/files/ENCFF000QNL/@@download/ENCFF000QNL.bam hg19 released biological replicates with identical biosample ENCFF000QNM bigBed broadPeak peaks ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMY 423894 Richard Myers, HAIB 8e7cfc1385039d5f93eaaea1bc918e37 https://www.encodeproject.org/files/ENCFF000QNM/@@download/ENCFF000QNM.bigBed hg19 released biological replicates with identical biosample ENCFF000QNN bigBed broadPeak peaks ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNA 380665 Richard Myers, HAIB df772a7af86544c4e075afa2361bd7d5 https://www.encodeproject.org/files/ENCFF000QNN/@@download/ENCFF000QNN.bigBed hg19 released biological replicates with identical biosample ENCFF000QNO bam alignments ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QNY 1481040808 Richard Myers, HAIB 2bde7bc17811a1fc62ec163c5d3a2660 https://www.encodeproject.org/files/ENCFF000QNO/@@download/ENCFF000QNO.bam hg19 released biological replicates with identical biosample ENCFF000QNQ bigWig raw signal ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 1 1 233499056 Richard Myers, HAIB d822c2c991de224340af2ccc433481e0 https://www.encodeproject.org/files/ENCFF000QNQ/@@download/ENCFF000QNQ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QNR bigWig raw signal ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 2 1 129834695 Richard Myers, HAIB 8761ba30521ccda79d4d3c868454637b https://www.encodeproject.org/files/ENCFF000QNR/@@download/ENCFF000QNR.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QNY fastq reads ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1579909980 Richard Myers, HAIB fd37e768722a6b2a071373f97e0d51eb https://www.encodeproject.org/files/ENCFF000QNY/@@download/ENCFF000QNY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF000QOA fastq reads ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2062897258 Richard Myers, HAIB 66649f9245cc662d7e6ba921cc6573f9 https://www.encodeproject.org/files/ENCFF000QOA/@@download/ENCFF000QOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMY bed broadPeak peaks ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 1 1 235699 Richard Myers, HAIB 8f1c3661e901ebe5bed05b076783ec22 https://www.encodeproject.org/files/ENCFF001UMY/@@download/ENCFF001UMY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNA bed broadPeak peaks ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 2 1 184856 Richard Myers, HAIB 92871cfc4811cfc5ddcfdb3ec521ed48 https://www.encodeproject.org/files/ENCFF001UNA/@@download/ENCFF001UNA.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000VSZ bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VTF 166650477 Sherman Weissman, Yale b93933f5ceee4605905d947a4681879d https://www.encodeproject.org/files/ENCFF000VSZ/@@download/ENCFF000VSZ.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTA bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VTG 199889923 Sherman Weissman, Yale 1d61b5fa31af4d4d667eb764a3e48f9a https://www.encodeproject.org/files/ENCFF000VTA/@@download/ENCFF000VTA.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTB bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000VTH 211824862 Sherman Weissman, Yale 58f0541782636fa253236fbf6d133068 https://www.encodeproject.org/files/ENCFF000VTB/@@download/ENCFF000VTB.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTC bigBed narrowPeak peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDZ 123977 Sherman Weissman, Yale 259bb32da63320c002f47cf535ebba04 https://www.encodeproject.org/files/ENCFF000VTC/@@download/ENCFF000VTC.bigBed hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTD bigWig signal ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 283855084 Sherman Weissman, Yale 5475bb9382be21439a8bf28b97a1cd80 https://www.encodeproject.org/files/ENCFF000VTD/@@download/ENCFF000VTD.bigWig hg19 released missing derived_from, duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTF fastq reads ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 132014501 Sherman Weissman, Yale d59ff2b70d766fc6a82fd0036e294bca https://www.encodeproject.org/files/ENCFF000VTF/@@download/ENCFF000VTF.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTG fastq reads ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 167039576 Sherman Weissman, Yale ad94b4c3d047656b0d9f056a280896ae https://www.encodeproject.org/files/ENCFF000VTG/@@download/ENCFF000VTG.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTH fastq reads ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 172284468 Sherman Weissman, Yale be02092c5fea0a7b938f2790accae31d https://www.encodeproject.org/files/ENCFF000VTH/@@download/ENCFF000VTH.fastq.gz Illumina Genome Analyzer released duplicate lane review, biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VDZ bed narrowPeak peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 29612 Sherman Weissman, Yale 3af9eb3e6946e9db84925ae4f2f31e75 https://www.encodeproject.org/files/ENCFF001VDZ/@@download/ENCFF001VDZ.bed.gz hg19 released duplicate lane review, biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002COM bed narrowPeak optimal idr thresholded peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 55234 ENCODE Consortium Analysis Working Group f1d429a4e067d67537009d22f43162c8 https://www.encodeproject.org/files/ENCFF002COM/@@download/ENCFF002COM.bed.gz hg19 released duplicate lane review, biological replicates with identical biosample, missing derived_from insufficient read length ENCFF083XJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COM 171579 ENCODE Consortium c3c24c22950cd1fab4d06a130d339858 https://www.encodeproject.org/files/ENCFF083XJS/@@download/ENCFF083XJS.bigBed hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000QHP bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QHU 351256754 Richard Myers, HAIB 2e5b9364f53149c1d2a14f514b3b807e https://www.encodeproject.org/files/ENCFF000QHP/@@download/ENCFF000QHP.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHQ bigBed broadPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001ULN 472589 Richard Myers, HAIB b77fac27cf14e478f730e842fbc73405 https://www.encodeproject.org/files/ENCFF000QHQ/@@download/ENCFF000QHQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHR bigBed broadPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULO 406171 Richard Myers, HAIB b3102ec2a97772954bb4a2c29cf0f269 https://www.encodeproject.org/files/ENCFF000QHR/@@download/ENCFF000QHR.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHS bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QHW 437535423 Richard Myers, HAIB 8fc0502eb496585c18fda20b04eddc8d https://www.encodeproject.org/files/ENCFF000QHS/@@download/ENCFF000QHS.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHT bigWig raw signal ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 15350943 Richard Myers, HAIB 423bd5aedf51a41a896458dcc0167b59 https://www.encodeproject.org/files/ENCFF000QHT/@@download/ENCFF000QHT.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHU fastq reads ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 333919947 Richard Myers, HAIB 9981b8587f0579592d6a435071d76788 https://www.encodeproject.org/files/ENCFF000QHU/@@download/ENCFF000QHU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHV bigWig raw signal ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 14363373 Richard Myers, HAIB c7969af258394ad59de418e02b8d967f https://www.encodeproject.org/files/ENCFF000QHV/@@download/ENCFF000QHV.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000QHW fastq reads ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 447452122 Richard Myers, HAIB d69664430fbf8a628230c056b6895cda https://www.encodeproject.org/files/ENCFF000QHW/@@download/ENCFF000QHW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001ULN bed broadPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 276976 Richard Myers, HAIB 63cbe5fe1a6dabd98368a3512aa3f4fb https://www.encodeproject.org/files/ENCFF001ULN/@@download/ENCFF001ULN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001ULO bed broadPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 224103 Richard Myers, HAIB 692f61773cbbb5d48feb06decb5de2af https://www.encodeproject.org/files/ENCFF001ULO/@@download/ENCFF001ULO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF002CMR bed narrowPeak optimal idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 312494 ENCODE Consortium Analysis Working Group c9a0dad556d6b26898d8aea60ac58f32 https://www.encodeproject.org/files/ENCFF002CMR/@@download/ENCFF002CMR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF311MSU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMR 871499 ENCODE Consortium b71fd4b0ed7c8d3a0e8948862befa526 https://www.encodeproject.org/files/ENCFF311MSU/@@download/ENCFF311MSU.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF993RMP bam unfiltered alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QHU, ENCFF643CGH 417629498 ENCODE Processing Pipeline 0a612acaa17645ba373637c5289ab02f https://www.encodeproject.org/files/ENCFF993RMP/@@download/ENCFF993RMP.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF025QKV bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QHU, ENCFF643CGH 169434641 ENCODE Processing Pipeline b23c6ea894f93cd5ba65a7481643724b https://www.encodeproject.org/files/ENCFF025QKV/@@download/ENCFF025QKV.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF075NNL bam unfiltered alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QHW, ENCFF643CGH 538374354 ENCODE Processing Pipeline d447fb6f611b619c601c6396ffb2b8ad https://www.encodeproject.org/files/ENCFF075NNL/@@download/ENCFF075NNL.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF919HAZ bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QHW, ENCFF643CGH 204759997 ENCODE Processing Pipeline 73ac3660da4132b949317eb9a4589d20 https://www.encodeproject.org/files/ENCFF919HAZ/@@download/ENCFF919HAZ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF278YTL bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QHU, ENCFF807MUK 169579468 ENCODE Processing Pipeline e729cbbe8493c22a8e7f8c0917da18c8 https://www.encodeproject.org/files/ENCFF278YTL/@@download/ENCFF278YTL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF926IER bam unfiltered alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QHU, ENCFF807MUK 417051309 ENCODE Processing Pipeline 97e0e41ba9e3b3184d9b4fce349a7169 https://www.encodeproject.org/files/ENCFF926IER/@@download/ENCFF926IER.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF415XRC bam unfiltered alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QHW, ENCFF807MUK 537566079 ENCODE Processing Pipeline d99c4f3efade793ee39b0ca854bf1be0 https://www.encodeproject.org/files/ENCFF415XRC/@@download/ENCFF415XRC.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF077WPD bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QHW, ENCFF807MUK 204909369 ENCODE Processing Pipeline 2c5284c9d80429fa4d8a06063ea865f5 https://www.encodeproject.org/files/ENCFF077WPD/@@download/ENCFF077WPD.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF580IYW bigWig signal p-value ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF025QKV 161255293 ENCODE Processing Pipeline b419ceb50f345408ce5a1a6dc5dd9741 https://www.encodeproject.org/files/ENCFF580IYW/@@download/ENCFF580IYW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF101GBL bigWig signal p-value ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF025QKV, ENCFF919HAZ 204026457 ENCODE Processing Pipeline 942faaaf7844c9f6153e7c1b045e0eb1 https://www.encodeproject.org/files/ENCFF101GBL/@@download/ENCFF101GBL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF844VWA bigWig signal p-value ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF919HAZ 184341105 ENCODE Processing Pipeline fa3d34523f4b2390cbbcbdd0112dcc91 https://www.encodeproject.org/files/ENCFF844VWA/@@download/ENCFF844VWA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF720SBY bigWig fold change over control ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF919HAZ 91159091 ENCODE Processing Pipeline 6389a9be480db714ed08c5891e90a5df https://www.encodeproject.org/files/ENCFF720SBY/@@download/ENCFF720SBY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF078KNC bigWig fold change over control ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF025QKV 76793426 ENCODE Processing Pipeline ddfb915094c75f49cd7e7551e5eb3571 https://www.encodeproject.org/files/ENCFF078KNC/@@download/ENCFF078KNC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF351VWV bigWig fold change over control ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF025QKV, ENCFF919HAZ 153619321 ENCODE Processing Pipeline b4d29d301e76b90acfd4c48f5b44165f https://www.encodeproject.org/files/ENCFF351VWV/@@download/ENCFF351VWV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF760KTM bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF025QKV, ENCFF919HAZ 4565728 ENCODE Processing Pipeline 1a317530dbe1ef4c851ce2ce8fae8212 https://www.encodeproject.org/files/ENCFF760KTM/@@download/ENCFF760KTM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF630IND bigBed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF290PQH 5084958 ENCODE Processing Pipeline 2ac859b6fa95264c8ee011ccb5101e8b https://www.encodeproject.org/files/ENCFF630IND/@@download/ENCFF630IND.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF290PQH bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF025QKV 2258635 ENCODE Processing Pipeline 4100b0aeb8295dfa020b3742d80b3620 https://www.encodeproject.org/files/ENCFF290PQH/@@download/ENCFF290PQH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF637RHV bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF919HAZ 2384040 ENCODE Processing Pipeline e8ed28288299a7392c8159d5619ae412 https://www.encodeproject.org/files/ENCFF637RHV/@@download/ENCFF637RHV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF937JNR bed narrowPeak conservative idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF290PQH, ENCFF419RSJ, ENCFF637RHV, ENCFF760KTM 311356 ENCODE Processing Pipeline 7545ae3ad70aaff5881a8b832b325fea https://www.encodeproject.org/files/ENCFF937JNR/@@download/ENCFF937JNR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF935LXU bigBed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF637RHV 5468578 ENCODE Processing Pipeline 53c3fa85d1b69660ef26aa19d562cc05 https://www.encodeproject.org/files/ENCFF935LXU/@@download/ENCFF935LXU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF980NYL bigBed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF760KTM 9959021 ENCODE Processing Pipeline 2865f03c440f86c5200570cdf2aa5acb https://www.encodeproject.org/files/ENCFF980NYL/@@download/ENCFF980NYL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF286DCL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF937JNR 696181 ENCODE Processing Pipeline 977be24834deb59c453e79ec8239e754 https://www.encodeproject.org/files/ENCFF286DCL/@@download/ENCFF286DCL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF988QGG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF453TIB 709351 ENCODE Processing Pipeline 1e37852b8682d5c8c752cc4cacecfd0c https://www.encodeproject.org/files/ENCFF988QGG/@@download/ENCFF988QGG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF453TIB bed narrowPeak optimal idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF290PQH, ENCFF419RSJ, ENCFF637RHV, ENCFF760KTM 320021 ENCODE Processing Pipeline fb8f377ae4ee66faf20bbc08f92960dc https://www.encodeproject.org/files/ENCFF453TIB/@@download/ENCFF453TIB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF779OEX bigWig signal p-value ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF278YTL, ENCFF750MIM 180928802 ENCODE Processing Pipeline 26b27facb6951e3e4a186868cce003d6 https://www.encodeproject.org/files/ENCFF779OEX/@@download/ENCFF779OEX.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF117OLU bigWig fold change over control ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF278YTL, ENCFF750MIM 76711853 ENCODE Processing Pipeline fb297ba7d7d84fa0dc058bae2288d1da https://www.encodeproject.org/files/ENCFF117OLU/@@download/ENCFF117OLU.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF865KYI bigWig signal p-value ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077WPD, ENCFF750MIM 204482675 ENCODE Processing Pipeline d4c55cbd82de72601b67877cb559755e https://www.encodeproject.org/files/ENCFF865KYI/@@download/ENCFF865KYI.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF392LPM bigWig signal p-value ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077WPD, ENCFF278YTL, ENCFF750MIM 204144324 ENCODE Processing Pipeline 5bd69438139883b50fa10734a5c2c4c0 https://www.encodeproject.org/files/ENCFF392LPM/@@download/ENCFF392LPM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF798EEM bigWig fold change over control ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077WPD, ENCFF750MIM 89952452 ENCODE Processing Pipeline 0d341aa17be24ea1277698b72dc79d7f https://www.encodeproject.org/files/ENCFF798EEM/@@download/ENCFF798EEM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF488POX bigWig fold change over control ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077WPD, ENCFF278YTL, ENCFF750MIM 153211819 ENCODE Processing Pipeline 049b5c31b51a438ef9581f6fb59a2e5e https://www.encodeproject.org/files/ENCFF488POX/@@download/ENCFF488POX.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF713KSL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF278YTL, ENCFF750MIM 2290084 ENCODE Processing Pipeline af1c4a7aa3b4d0dfc348d3685a0b7c8b https://www.encodeproject.org/files/ENCFF713KSL/@@download/ENCFF713KSL.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF847XRL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077WPD, ENCFF750MIM 2486166 ENCODE Processing Pipeline 33a6656245faca919822bdb778bb5af9 https://www.encodeproject.org/files/ENCFF847XRL/@@download/ENCFF847XRL.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF697OMD bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077WPD, ENCFF278YTL, ENCFF750MIM 4578291 ENCODE Processing Pipeline b347556ef4467cbca18d807a75977bea https://www.encodeproject.org/files/ENCFF697OMD/@@download/ENCFF697OMD.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF182SUE bigBed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF713KSL 5134241 ENCODE Processing Pipeline e67bc70a3d0de688703b23e16cac5af7 https://www.encodeproject.org/files/ENCFF182SUE/@@download/ENCFF182SUE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF862OGD bigBed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF847XRL 5591136 ENCODE Processing Pipeline 758387678d9633725f24f530b72c5970 https://www.encodeproject.org/files/ENCFF862OGD/@@download/ENCFF862OGD.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF238SFQ bigBed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF697OMD 9976324 ENCODE Processing Pipeline 4aa1365008169ae75072f3ed14f4695b https://www.encodeproject.org/files/ENCFF238SFQ/@@download/ENCFF238SFQ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF052NLP bed narrowPeak conservative idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF697OMD, ENCFF713KSL, ENCFF847XRL 313846 ENCODE Processing Pipeline e0f3ffe848d8e90231ec8e3bfa0f2da3 https://www.encodeproject.org/files/ENCFF052NLP/@@download/ENCFF052NLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF327XLK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF052NLP 698691 ENCODE Processing Pipeline ca18db0b5ddd20e853dc055e328f83e7 https://www.encodeproject.org/files/ENCFF327XLK/@@download/ENCFF327XLK.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF822FWM bed narrowPeak optimal idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF697OMD, ENCFF713KSL, ENCFF847XRL 317644 ENCODE Processing Pipeline e0213c493c391ae380358cfc2d5a8490 https://www.encodeproject.org/files/ENCFF822FWM/@@download/ENCFF822FWM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF889VHM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF822FWM 705515 ENCODE Processing Pipeline 27c742e177897ab7881bb4705e4b6362 https://www.encodeproject.org/files/ENCFF889VHM/@@download/ENCFF889VHM.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000BAJ bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000BAS 979239682 Bradley Bernstein, Broad 64aa1f9e9dff974229dd2c8b9e1910d4 https://www.encodeproject.org/files/ENCFF000BAJ/@@download/ENCFF000BAJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BAK bigBed broadPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001SVR 2426336 Bradley Bernstein, Broad c479119a8f0b40ff924f96e0f498c827 https://www.encodeproject.org/files/ENCFF000BAK/@@download/ENCFF000BAK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BAL bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000BAT 1016709538 Bradley Bernstein, Broad bfad1089c59230bdb69e9edc727f1c1c https://www.encodeproject.org/files/ENCFF000BAL/@@download/ENCFF000BAL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BAN bigWig signal ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 686378016 Bradley Bernstein, Broad b6242e87e9e5922929480cb51a9f3e2d https://www.encodeproject.org/files/ENCFF000BAN/@@download/ENCFF000BAN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from ENCFF000BAS fastq reads ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 1101800397 Bradley Bernstein, Broad 3144a69ca7e985cc74f494f74e4824c8 https://www.encodeproject.org/files/ENCFF000BAS/@@download/ENCFF000BAS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BAU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000BAT fastq reads ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 1073637827 Bradley Bernstein, Broad 9ebd696f2d6362c8fadaf48d966d2edd https://www.encodeproject.org/files/ENCFF000BAT/@@download/ENCFF000BAT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BAO/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001SVR bed broadPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1488744 Bradley Bernstein, Broad 207c37c4201187417631f769dcfc743d https://www.encodeproject.org/files/ENCFF001SVR/@@download/ENCFF001SVR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from ENCFF002CDW bed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1041888 ENCODE Consortium Analysis Working Group b72dd7d21c8e29fbd69c073cfded6de8 https://www.encodeproject.org/files/ENCFF002CDW/@@download/ENCFF002CDW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from ENCFF497ILR bigBed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CDW 2101478 ENCODE Consortium 31c46d394fc6c5069d17ec89db8ddf43 https://www.encodeproject.org/files/ENCFF497ILR/@@download/ENCFF497ILR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF610QSE bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BAS, ENCFF643CGH 625236292 ENCODE Processing Pipeline 5158b305198e54deecaaf18cf448a89d https://www.encodeproject.org/files/ENCFF610QSE/@@download/ENCFF610QSE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF211TQG bam unfiltered alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BAS, ENCFF643CGH 1394088969 ENCODE Processing Pipeline 03007d7da7ac44a6d625aaf7f2052ba4 https://www.encodeproject.org/files/ENCFF211TQG/@@download/ENCFF211TQG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF144LJX bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BAT, ENCFF643CGH 782324882 ENCODE Processing Pipeline 8acb3a2daba8b196cdac5d228a0d2912 https://www.encodeproject.org/files/ENCFF144LJX/@@download/ENCFF144LJX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046FAF bam unfiltered alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BAT, ENCFF643CGH 1377966416 ENCODE Processing Pipeline 5c16c520e6e8e0e01728732c6f02c3c4 https://www.encodeproject.org/files/ENCFF046FAF/@@download/ENCFF046FAF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF127KMX bam unfiltered alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BAT, ENCFF807MUK 1372925787 ENCODE Processing Pipeline a37a5f8f2a3886de6b0f53bcfd3d12c8 https://www.encodeproject.org/files/ENCFF127KMX/@@download/ENCFF127KMX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF054YWR bam unfiltered alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BAS, ENCFF807MUK 1388392018 ENCODE Processing Pipeline 762946f4c9dedef19f823df92eb88651 https://www.encodeproject.org/files/ENCFF054YWR/@@download/ENCFF054YWR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF474UIC bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BAS, ENCFF807MUK 625573538 ENCODE Processing Pipeline 0f29df98bbd9691d08705739119163c3 https://www.encodeproject.org/files/ENCFF474UIC/@@download/ENCFF474UIC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF163WNN bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BAT, ENCFF807MUK 782625609 ENCODE Processing Pipeline 88d57d7e279232f514ee881fb8e63132 https://www.encodeproject.org/files/ENCFF163WNN/@@download/ENCFF163WNN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF732SOO bigWig fold change over control ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF144LJX, ENCFF432JPE, ENCFF818YAG 625034115 ENCODE Processing Pipeline c1c0dac733eb714610db9336a55baad6 https://www.encodeproject.org/files/ENCFF732SOO/@@download/ENCFF732SOO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF587DOH bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF144LJX, ENCFF432JPE, ENCFF610QSE, ENCFF818YAG 6417671 ENCODE Processing Pipeline 3c8d516e56eed2bd158423f729d4b767 https://www.encodeproject.org/files/ENCFF587DOH/@@download/ENCFF587DOH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF592HCJ bigWig fold change over control ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF432JPE, ENCFF610QSE, ENCFF818YAG 535240266 ENCODE Processing Pipeline 1fb423fa2d3e85adb7c625b28383895b https://www.encodeproject.org/files/ENCFF592HCJ/@@download/ENCFF592HCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF862FGB bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF432JPE, ENCFF610QSE, ENCFF818YAG 5656694 ENCODE Processing Pipeline adb19b65a4dc2cf99a112b6901f37ea2 https://www.encodeproject.org/files/ENCFF862FGB/@@download/ENCFF862FGB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF349SPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF533TKY 1277158 ENCODE Processing Pipeline 935b56755c0f22eca199ae29e46dc40e https://www.encodeproject.org/files/ENCFF349SPV/@@download/ENCFF349SPV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF331BAX bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF144LJX, ENCFF432JPE, ENCFF818YAG 6094548 ENCODE Processing Pipeline 76fda81376ea74a23fbbba780398000f https://www.encodeproject.org/files/ENCFF331BAX/@@download/ENCFF331BAX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF903IEY bigBed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF862FGB 11100592 ENCODE Processing Pipeline 83c01836e6c22b977039125523047acf https://www.encodeproject.org/files/ENCFF903IEY/@@download/ENCFF903IEY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF268SUQ bigWig signal p-value ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF432JPE, ENCFF610QSE, ENCFF818YAG 877975960 ENCODE Processing Pipeline 1023746bdb7a4869c26a7c3b4d938fae https://www.encodeproject.org/files/ENCFF268SUQ/@@download/ENCFF268SUQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF491DPR bigWig signal p-value ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF144LJX, ENCFF432JPE, ENCFF818YAG 839392182 ENCODE Processing Pipeline 5c70f0a704985d2d132a84d44b345677 https://www.encodeproject.org/files/ENCFF491DPR/@@download/ENCFF491DPR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF204ZDF bigWig signal p-value ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF144LJX, ENCFF432JPE, ENCFF610QSE, ENCFF818YAG 1069064952 ENCODE Processing Pipeline a4e04fcc6e5732e088607491a8854f24 https://www.encodeproject.org/files/ENCFF204ZDF/@@download/ENCFF204ZDF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF836JPY bigWig fold change over control ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF144LJX, ENCFF432JPE, ENCFF610QSE, ENCFF818YAG 930060607 ENCODE Processing Pipeline 413b5e5057bac15b1f8284c67de52bc8 https://www.encodeproject.org/files/ENCFF836JPY/@@download/ENCFF836JPY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF533TKY bed narrowPeak conservative idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF331BAX, ENCFF419RSJ, ENCFF587DOH, ENCFF862FGB 766097 ENCODE Processing Pipeline 1baf416137fbbd33ecefaf6cc3dc443d https://www.encodeproject.org/files/ENCFF533TKY/@@download/ENCFF533TKY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF220DSF bigBed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF331BAX 13877546 ENCODE Processing Pipeline 959a3262ff29d7e69d2092e324fd9f34 https://www.encodeproject.org/files/ENCFF220DSF/@@download/ENCFF220DSF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF595VUP bigBed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF587DOH 13705245 ENCODE Processing Pipeline 479e3167c240ed5f4160870b6522d7e1 https://www.encodeproject.org/files/ENCFF595VUP/@@download/ENCFF595VUP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF502CZS bed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF331BAX, ENCFF419RSJ, ENCFF587DOH, ENCFF862FGB 765478 ENCODE Processing Pipeline 27a08fe1979a7add3ee607a4b2b44c58 https://www.encodeproject.org/files/ENCFF502CZS/@@download/ENCFF502CZS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF502PQB bigBed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF502CZS 1278858 ENCODE Processing Pipeline 0547efc401798657708bf95f6e4d4691 https://www.encodeproject.org/files/ENCFF502PQB/@@download/ENCFF502PQB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF025HZO bigWig fold change over control ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK 623206050 ENCODE Processing Pipeline 07a9afa07e5274bfe97d1546320e29f2 https://www.encodeproject.org/files/ENCFF025HZO/@@download/ENCFF025HZO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF915PWP bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK 6100374 ENCODE Processing Pipeline f668df82c5013c3dc11ee7147f514f74 https://www.encodeproject.org/files/ENCFF915PWP/@@download/ENCFF915PWP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF519MDS bigWig fold change over control ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 519406992 ENCODE Processing Pipeline 3dd4653e622d632513b56080a7ab5773 https://www.encodeproject.org/files/ENCFF519MDS/@@download/ENCFF519MDS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF799KLZ bigWig fold change over control ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 898824679 ENCODE Processing Pipeline d89ca132bf4a45781ad61b936afacf06 https://www.encodeproject.org/files/ENCFF799KLZ/@@download/ENCFF799KLZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF992STW bigBed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF915PWP 13880208 ENCODE Processing Pipeline 9e5183491ef441a8de9017bfb770b095 https://www.encodeproject.org/files/ENCFF992STW/@@download/ENCFF992STW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF371QKF bigBed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF652AZC 13703301 ENCODE Processing Pipeline 4bf98a172691b3cb89ca1a51dbebda43 https://www.encodeproject.org/files/ENCFF371QKF/@@download/ENCFF371QKF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF545BWW bigWig signal p-value ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 825768184 ENCODE Processing Pipeline 9a5d250c71de2115d48132d3297b7f50 https://www.encodeproject.org/files/ENCFF545BWW/@@download/ENCFF545BWW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF474KGT bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 5658490 ENCODE Processing Pipeline ce82950f0f188ee5cb89e908c11c76ea https://www.encodeproject.org/files/ENCFF474KGT/@@download/ENCFF474KGT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF652AZC bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 6417564 ENCODE Processing Pipeline 76a1fc29b32a869c663f2521df329753 https://www.encodeproject.org/files/ENCFF652AZC/@@download/ENCFF652AZC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF825WUN bigBed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF474KGT 11097187 ENCODE Processing Pipeline 75c135a6c54dc7f470aa204700ac06db https://www.encodeproject.org/files/ENCFF825WUN/@@download/ENCFF825WUN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF768OPK bed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF474KGT, ENCFF652AZC, ENCFF915PWP 770935 ENCODE Processing Pipeline 37dbe73e85937bacc0dd37a6cd7e6353 https://www.encodeproject.org/files/ENCFF768OPK/@@download/ENCFF768OPK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF373ZHE bigWig signal p-value ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK 952123078 ENCODE Processing Pipeline b98d6ff42fe0e3362b9d0da62ca39a65 https://www.encodeproject.org/files/ENCFF373ZHE/@@download/ENCFF373ZHE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF201EIR bigWig signal p-value ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 941372661 ENCODE Processing Pipeline 1569935ade0c7b7a49c5d29919a5fae5 https://www.encodeproject.org/files/ENCFF201EIR/@@download/ENCFF201EIR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF002IEC bed narrowPeak conservative idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF474KGT, ENCFF652AZC, ENCFF915PWP 765950 ENCODE Processing Pipeline b356c593a865233f73efe90392d8f3f5 https://www.encodeproject.org/files/ENCFF002IEC/@@download/ENCFF002IEC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF205ZAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF002IEC 1276921 ENCODE Processing Pipeline f8c988fd2e35fb2165f70cd806eb4269 https://www.encodeproject.org/files/ENCFF205ZAQ/@@download/ENCFF205ZAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF204VWO bigBed narrowPeak optimal idr thresholded peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF768OPK 1286816 ENCODE Processing Pipeline ae172a36144baa10f5c96a4accddfd0f https://www.encodeproject.org/files/ENCFF204VWO/@@download/ENCFF204VWO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF000WAJ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 1 572644177 Michael Snyder, Stanford 0c929d2fa8d48a537fc2225478706e8e https://www.encodeproject.org/files/ENCFF000WAJ/@@download/ENCFF000WAJ.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF000WAL bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE ENCFF001VEX 2492457 Michael Snyder, Stanford 90e7caa6cbe032fa87218f1ab24c976b https://www.encodeproject.org/files/ENCFF000WAL/@@download/ENCFF000WAL.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF000WAM fastq reads ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 1 36 single-ended 1016216557 Michael Snyder, Stanford 694eaba93868553e365487637eef3989 https://www.encodeproject.org/files/ENCFF000WAM/@@download/ENCFF000WAM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWD/ released borderline replicate concordance, inconsistent target of control experiment, low read length, inconsistent platforms, low read depth, inconsistent control read length ENCFF000WAO fastq reads ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 1 36 single-ended 871456909 Michael Snyder, Stanford 172e0c965fcfef070f75580921c8cc60 https://www.encodeproject.org/files/ENCFF000WAO/@@download/ENCFF000WAO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWK/ released borderline replicate concordance, inconsistent target of control experiment, low read length, inconsistent platforms, low read depth, inconsistent control read length ENCFF000WAQ bigWig signal ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 391973984 Michael Snyder, Stanford c4d8e955e151485865a1ed1f5ac8b1cc https://www.encodeproject.org/files/ENCFF000WAQ/@@download/ENCFF000WAQ.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF000WAR bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 1 510736714 Michael Snyder, Stanford 46dd1386d8e1eeaa5816c651b95c7e5f https://www.encodeproject.org/files/ENCFF000WAR/@@download/ENCFF000WAR.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF001VEX bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 938420 Michael Snyder, Stanford bc6ddcbb18190cff6f65d8894d6a87ab https://www.encodeproject.org/files/ENCFF001VEX/@@download/ENCFF001VEX.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF002CPE bed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 442586 ENCODE Consortium Analysis Working Group d418a64ce8855426c0c7e266c4950479 https://www.encodeproject.org/files/ENCFF002CPE/@@download/ENCFF002CPE.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF222OWH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE ENCFF002CPE 1085773 ENCODE Consortium f0ce899e1e97ba896f9caf6cb3e175f1 https://www.encodeproject.org/files/ENCFF222OWH/@@download/ENCFF222OWH.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF273YVM bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF643CGH 890697978 ENCODE Processing Pipeline 4f9ec9a24977c50a81c472d3edcd662b https://www.encodeproject.org/files/ENCFF273YVM/@@download/ENCFF273YVM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF036AJQ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF643CGH 634258317 ENCODE Processing Pipeline 02ea338e0c40710b93cf233413b7234d https://www.encodeproject.org/files/ENCFF036AJQ/@@download/ENCFF036AJQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF497KQT bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF643CGH 1015406783 ENCODE Processing Pipeline 5aec592bd5eddd1589fd901f34cf98f3 https://www.encodeproject.org/files/ENCFF497KQT/@@download/ENCFF497KQT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF881THF bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF643CGH 561255333 ENCODE Processing Pipeline 1266844959aedf1186736d96e558d651 https://www.encodeproject.org/files/ENCFF881THF/@@download/ENCFF881THF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF410XFU bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF807MUK 887458167 ENCODE Processing Pipeline c920e68c9df01c4d358482c5af868e50 https://www.encodeproject.org/files/ENCFF410XFU/@@download/ENCFF410XFU.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF344EBI bam unfiltered alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF807MUK 1011744454 ENCODE Processing Pipeline 383aecb57d8e8d493f03250dadb27da7 https://www.encodeproject.org/files/ENCFF344EBI/@@download/ENCFF344EBI.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF728IVZ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF807MUK 561302040 ENCODE Processing Pipeline 81f456d2496187eb154be06a79a01f15 https://www.encodeproject.org/files/ENCFF728IVZ/@@download/ENCFF728IVZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF258NYC bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF807MUK 633682275 ENCODE Processing Pipeline 60318c2c1e13c8e8cb460e5c70f27dbc https://www.encodeproject.org/files/ENCFF258NYC/@@download/ENCFF258NYC.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF253KOV bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 180314189 ENCODE Processing Pipeline 0424f99405ac566fc5a93d05be855d06 https://www.encodeproject.org/files/ENCFF253KOV/@@download/ENCFF253KOV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF050DSI bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 283200540 ENCODE Processing Pipeline 8837970644e8cc57377a87416babca34 https://www.encodeproject.org/files/ENCFF050DSI/@@download/ENCFF050DSI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF133VDP bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 75932531 ENCODE Processing Pipeline 69d4b5c3278417de7d2cd14a04d91cc9 https://www.encodeproject.org/files/ENCFF133VDP/@@download/ENCFF133VDP.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF643UFI bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO, ENCFF728IVZ 169148707 ENCODE Processing Pipeline 1584c494dc7ebc32072a834bf3ae9814 https://www.encodeproject.org/files/ENCFF643UFI/@@download/ENCFF643UFI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF209OKB bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 217647279 ENCODE Processing Pipeline cdb932dc69952622826b537234b786a6 https://www.encodeproject.org/files/ENCFF209OKB/@@download/ENCFF209OKB.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF820BXH bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO, ENCFF728IVZ 481028174 ENCODE Processing Pipeline aa7b26a6c183fbb7837ca50e2b96c02b https://www.encodeproject.org/files/ENCFF820BXH/@@download/ENCFF820BXH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF270RLY bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 4424277 ENCODE Processing Pipeline bc7a9f5c798d838ca235739f1184e385 https://www.encodeproject.org/files/ENCFF270RLY/@@download/ENCFF270RLY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF429WXC bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 3915798 ENCODE Processing Pipeline f6653f3d0a01e5ae0da9a2c116519085 https://www.encodeproject.org/files/ENCFF429WXC/@@download/ENCFF429WXC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF446MPR bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO, ENCFF728IVZ 4900558 ENCODE Processing Pipeline ff7eb6846ecdf64e44eb1fa3d3cf8b20 https://www.encodeproject.org/files/ENCFF446MPR/@@download/ENCFF446MPR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF705QDM bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF270RLY 10340138 ENCODE Processing Pipeline c5d0bdc57e6d47b2c09b5dc76710a957 https://www.encodeproject.org/files/ENCFF705QDM/@@download/ENCFF705QDM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF146ZTB bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF429WXC 9776286 ENCODE Processing Pipeline cb4d8649376026a74e4ab07b743580df https://www.encodeproject.org/files/ENCFF146ZTB/@@download/ENCFF146ZTB.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF208CRK bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF446MPR 10989046 ENCODE Processing Pipeline 5a84ddffa6bbc2faadd8db24b39f6818 https://www.encodeproject.org/files/ENCFF208CRK/@@download/ENCFF208CRK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF476RII bed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF270RLY, ENCFF429WXC, ENCFF446MPR 248701 ENCODE Processing Pipeline 7c0cba51afaaf1e44285065e4dc7fb29 https://www.encodeproject.org/files/ENCFF476RII/@@download/ENCFF476RII.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF332HKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF476RII 545214 ENCODE Processing Pipeline 2b3c30ea8ff8a4dfa5598113a67afd56 https://www.encodeproject.org/files/ENCFF332HKJ/@@download/ENCFF332HKJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF366ADQ bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF881THF 218876338 ENCODE Processing Pipeline d54a672bc98f538bf95d747b80eaf1b0 https://www.encodeproject.org/files/ENCFF366ADQ/@@download/ENCFF366ADQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF229TNP bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF114IQB 10986441 ENCODE Processing Pipeline 462a955426ac3cb74ad65ec72b052983 https://www.encodeproject.org/files/ENCFF229TNP/@@download/ENCFF229TNP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF222XPQ bed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF270RLY, ENCFF429WXC, ENCFF446MPR 352738 ENCODE Processing Pipeline d8641f789549a9b495f93565e6cf3260 https://www.encodeproject.org/files/ENCFF222XPQ/@@download/ENCFF222XPQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF833BVH bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS 180374821 ENCODE Processing Pipeline 072d84dfa3f46d35762aca2f916da5e5 https://www.encodeproject.org/files/ENCFF833BVH/@@download/ENCFF833BVH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF917GLI bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF127KCF 9770516 ENCODE Processing Pipeline c1b92a2d864acf9eabff86dab6f60b11 https://www.encodeproject.org/files/ENCFF917GLI/@@download/ENCFF917GLI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF696CNS bed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF114IQB, ENCFF127KCF, ENCFF419RSJ, ENCFF445UCE 251090 ENCODE Processing Pipeline b28ac6ee98ff3943844b29e5697ed725 https://www.encodeproject.org/files/ENCFF696CNS/@@download/ENCFF696CNS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF166QFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF222XPQ 723586 ENCODE Processing Pipeline 3e729ca5c5e2a29fa5c4d1a27c923791 https://www.encodeproject.org/files/ENCFF166QFI/@@download/ENCFF166QFI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF883EYG bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF881THF 75914852 ENCODE Processing Pipeline ab581c49b828c9bad5ba45c523a5bffe https://www.encodeproject.org/files/ENCFF883EYG/@@download/ENCFF883EYG.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF313UYC bigBed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF445UCE 10388546 ENCODE Processing Pipeline 8603433d3e510a609601aa9c4b0a2e9b https://www.encodeproject.org/files/ENCFF313UYC/@@download/ENCFF313UYC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF119GUM bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS 283050655 ENCODE Processing Pipeline d3ef543352490b90a04b8f8f6026f8d0 https://www.encodeproject.org/files/ENCFF119GUM/@@download/ENCFF119GUM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF591KAQ bigWig signal p-value ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS, ENCFF881THF 169215852 ENCODE Processing Pipeline bd87f592c851e5f1706c97c2e1e7c538 https://www.encodeproject.org/files/ENCFF591KAQ/@@download/ENCFF591KAQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF977NLF bigWig fold change over control ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS, ENCFF881THF 480870277 ENCODE Processing Pipeline 43e52745d5c772215c3f5142cb9e64ee https://www.encodeproject.org/files/ENCFF977NLF/@@download/ENCFF977NLF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF771MIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF696CNS 548916 ENCODE Processing Pipeline 184c958f4eef165e08b292e5dd7646c8 https://www.encodeproject.org/files/ENCFF771MIM/@@download/ENCFF771MIM.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF865UDD bed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF114IQB, ENCFF127KCF, ENCFF419RSJ, ENCFF445UCE 347179 ENCODE Processing Pipeline 80e030ed5a3ffc5232fc1fceee48f045 https://www.encodeproject.org/files/ENCFF865UDD/@@download/ENCFF865UDD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF445UCE bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS 4468895 ENCODE Processing Pipeline 26db79197902a6d9f94b6544c6e0986d https://www.encodeproject.org/files/ENCFF445UCE/@@download/ENCFF445UCE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF127KCF bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF881THF 3915179 ENCODE Processing Pipeline d52ca514f3c9fb40c69ae229e3d030ac https://www.encodeproject.org/files/ENCFF127KCF/@@download/ENCFF127KCF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF114IQB bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF036AJQ, ENCFF477ZKJ, ENCFF710SMS, ENCFF881THF 4898284 ENCODE Processing Pipeline 8ba9a4e49b9e20e6b1dd1a56df08bf54 https://www.encodeproject.org/files/ENCFF114IQB/@@download/ENCFF114IQB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF905BUH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1, 2 ENCFF865UDD 712554 ENCODE Processing Pipeline 7098abf08e2bfb3487b03b4d14a7bd01 https://www.encodeproject.org/files/ENCFF905BUH/@@download/ENCFF905BUH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF000VUG bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 1 528902339 Michael Snyder, Stanford 9ccc6afc6499fa96e8af6b93bb3a3c39 https://www.encodeproject.org/files/ENCFF000VUG/@@download/ENCFF000VUG.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VUH bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 1 619299146 Michael Snyder, Stanford 5fd5098812b16ba7ea54b3a2540d3d20 https://www.encodeproject.org/files/ENCFF000VUH/@@download/ENCFF000VUH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VUI bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEE 353670 Michael Snyder, Stanford 6e5e1ca8ff3e6ef19ea78b3fce45fd9d https://www.encodeproject.org/files/ENCFF000VUI/@@download/ENCFF000VUI.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VUJ fastq reads ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 904064332 Michael Snyder, Stanford 66fbeb5f05fa677f586b5baa9c0ea687 https://www.encodeproject.org/files/ENCFF000VUJ/@@download/ENCFF000VUJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VUL fastq reads ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1071631270 Michael Snyder, Stanford c9437c2495ceabf169364c2e44b48e86 https://www.encodeproject.org/files/ENCFF000VUL/@@download/ENCFF000VUL.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VUN bigWig signal ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 256792396 Michael Snyder, Stanford 20869ed39ea25615b34d6e6f732aff06 https://www.encodeproject.org/files/ENCFF000VUN/@@download/ENCFF000VUN.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VEE bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 144487 Michael Snyder, Stanford d91c60a45bde38fbb0180074759b8c03 https://www.encodeproject.org/files/ENCFF001VEE/@@download/ENCFF001VEE.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002COR bed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 91273 ENCODE Consortium Analysis Working Group 6c7a8a4cdae4db29921014968fe79a1f https://www.encodeproject.org/files/ENCFF002COR/@@download/ENCFF002COR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF758FQD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COR 328389 ENCODE Consortium 606a69065c2fff20b5af7c9309e0c450 https://www.encodeproject.org/files/ENCFF758FQD/@@download/ENCFF758FQD.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189DMF bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF643CGH 735651956 ENCODE Processing Pipeline b13ca4c87c6add46e307fa3288781efe https://www.encodeproject.org/files/ENCFF189DMF/@@download/ENCFF189DMF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF781WSB bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF643CGH 933520367 ENCODE Processing Pipeline 8018f202b42f8179c31f8576129972e8 https://www.encodeproject.org/files/ENCFF781WSB/@@download/ENCFF781WSB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF926BIU bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF643CGH 606772471 ENCODE Processing Pipeline 9a89b67e1c96ff07478d3dcbf0297867 https://www.encodeproject.org/files/ENCFF926BIU/@@download/ENCFF926BIU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF804JMX bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF643CGH 1115269870 ENCODE Processing Pipeline a6998c71d1f5edec2faad6f93728e657 https://www.encodeproject.org/files/ENCFF804JMX/@@download/ENCFF804JMX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285WSG bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF807MUK 929826777 ENCODE Processing Pipeline 8f6bbfe1b98f6819141cd5dd70229964 https://www.encodeproject.org/files/ENCFF285WSG/@@download/ENCFF285WSG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF960CBP bam unfiltered alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF807MUK 1110646319 ENCODE Processing Pipeline 6896d4ac923260fd9904711ebe163006 https://www.encodeproject.org/files/ENCFF960CBP/@@download/ENCFF960CBP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169ZIP bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF807MUK 735482157 ENCODE Processing Pipeline 23defd2ec4eee71976ac4af442f6d17f https://www.encodeproject.org/files/ENCFF169ZIP/@@download/ENCFF169ZIP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF597JXK bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF807MUK 606881201 ENCODE Processing Pipeline d536306144f40671ca7b8c6467a0e209 https://www.encodeproject.org/files/ENCFF597JXK/@@download/ENCFF597JXK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF073KLS bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191NQS 9735074 ENCODE Processing Pipeline 74150ba427f71aeb1a1f7ff151f374e7 https://www.encodeproject.org/files/ENCFF073KLS/@@download/ENCFF073KLS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF507BWP bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 263012853 ENCODE Processing Pipeline 394d8f035dc2765e02c6a304588f59c4 https://www.encodeproject.org/files/ENCFF507BWP/@@download/ENCFF507BWP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF795KLW bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF169ZIP, ENCFF545DZO, ENCFF597JXK 154131368 ENCODE Processing Pipeline 823f5ab792613cdf31188b0584614f9b https://www.encodeproject.org/files/ENCFF795KLW/@@download/ENCFF795KLW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF371NNZ bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 259360946 ENCODE Processing Pipeline 723d2c3c8a62d2059395c0b62586575f https://www.encodeproject.org/files/ENCFF371NNZ/@@download/ENCFF371NNZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF191NQS bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 3873486 ENCODE Processing Pipeline 0554fc80e5ff413de68ad8b01bde8c66 https://www.encodeproject.org/files/ENCFF191NQS/@@download/ENCFF191NQS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF683PLX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF850MAC 173157 ENCODE Processing Pipeline 2df1b597831b79017e9f5355ae640c57 https://www.encodeproject.org/files/ENCFF683PLX/@@download/ENCFF683PLX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF089IJA bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 171709217 ENCODE Processing Pipeline 10c56b3eb0ef924137ff335dfce176bf https://www.encodeproject.org/files/ENCFF089IJA/@@download/ENCFF089IJA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF018XHQ bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 72799651 ENCODE Processing Pipeline b1b69146608cf89f062b3b4331dec487 https://www.encodeproject.org/files/ENCFF018XHQ/@@download/ENCFF018XHQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF926RPL bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF169ZIP, ENCFF545DZO, ENCFF597JXK 511029366 ENCODE Processing Pipeline 1e90e98b639c60d22bb0158bdcecf3e0 https://www.encodeproject.org/files/ENCFF926RPL/@@download/ENCFF926RPL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF128GGA bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 3703960 ENCODE Processing Pipeline b202a9dadaea6440fee22d78cd1f676e https://www.encodeproject.org/files/ENCFF128GGA/@@download/ENCFF128GGA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF324TDX bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF319MWF 10996554 ENCODE Processing Pipeline 5d833b7c27e4bb0ccc81ef2c8523dafc https://www.encodeproject.org/files/ENCFF324TDX/@@download/ENCFF324TDX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF319MWF bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF169ZIP, ENCFF545DZO, ENCFF597JXK 4482472 ENCODE Processing Pipeline 00dd5cb031d39f2eab7febd42ac8b21e https://www.encodeproject.org/files/ENCFF319MWF/@@download/ENCFF319MWF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF757FAQ bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF128GGA 9798650 ENCODE Processing Pipeline aa88b9f1571187a86abac92bdb406723 https://www.encodeproject.org/files/ENCFF757FAQ/@@download/ENCFF757FAQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF850MAC bed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF128GGA, ENCFF191NQS, ENCFF319MWF 74207 ENCODE Processing Pipeline a802c49dd599c4a87c8719a78c5d77f8 https://www.encodeproject.org/files/ENCFF850MAC/@@download/ENCFF850MAC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF433PFN bed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF128GGA, ENCFF191NQS, ENCFF319MWF 85609 ENCODE Processing Pipeline 62c04d74d3bb8393fd21d79f6d87f4c0 https://www.encodeproject.org/files/ENCFF433PFN/@@download/ENCFF433PFN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF544GDN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF433PFN 189484 ENCODE Processing Pipeline 841a0522abc456c22e0a1e9cbf84e4b2 https://www.encodeproject.org/files/ENCFF544GDN/@@download/ENCFF544GDN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF619JWG bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 265825153 ENCODE Processing Pipeline 5f093c852cb83e1fd1231630d26b5205 https://www.encodeproject.org/files/ENCFF619JWG/@@download/ENCFF619JWG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF662YTA bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189DMF, ENCFF477ZKJ 258651771 ENCODE Processing Pipeline dfd4e4319112c275043be005c42523a9 https://www.encodeproject.org/files/ENCFF662YTA/@@download/ENCFF662YTA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF417WYL bigWig fold change over control ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189DMF, ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 512846790 ENCODE Processing Pipeline fcb3f3f9ae6f14631813f7e4c904ce9c https://www.encodeproject.org/files/ENCFF417WYL/@@download/ENCFF417WYL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF095TZR bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF132LKV 11009811 ENCODE Processing Pipeline 89f9bc4dd625274826b35592ba7da018 https://www.encodeproject.org/files/ENCFF095TZR/@@download/ENCFF095TZR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF896OWK bed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF132LKV, ENCFF375BHX, ENCFF419RSJ, ENCFF852HEH 75423 ENCODE Processing Pipeline f8d2c6d0c4f16897f4575e0dcd3f36cd https://www.encodeproject.org/files/ENCFF896OWK/@@download/ENCFF896OWK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF172ILV bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF375BHX 9735390 ENCODE Processing Pipeline ffe9f800c25d0509398551b797bfef69 https://www.encodeproject.org/files/ENCFF172ILV/@@download/ENCFF172ILV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF159KDE bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189DMF, ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 153550252 ENCODE Processing Pipeline 0f495462bced7c2df49d0f9c30785848 https://www.encodeproject.org/files/ENCFF159KDE/@@download/ENCFF159KDE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF830SRX bigBed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF852HEH 9803963 ENCODE Processing Pipeline d64f3606fd86d2b789bfad7e72ee5cf2 https://www.encodeproject.org/files/ENCFF830SRX/@@download/ENCFF830SRX.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF310BBF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF896OWK 175045 ENCODE Processing Pipeline db92488b136347694c992c3c5b0a34e1 https://www.encodeproject.org/files/ENCFF310BBF/@@download/ENCFF310BBF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF687SFB bed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF132LKV, ENCFF375BHX, ENCFF419RSJ, ENCFF852HEH 83076 ENCODE Processing Pipeline 563c0d5cee7b626c61508bddca8d0fa4 https://www.encodeproject.org/files/ENCFF687SFB/@@download/ENCFF687SFB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF104LQU bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 172546145 ENCODE Processing Pipeline 827ff4588020505faf52cc8e317a282c https://www.encodeproject.org/files/ENCFF104LQU/@@download/ENCFF104LQU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF335XQU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF687SFB 185931 ENCODE Processing Pipeline 4ab26004ce7aa98e7985a827f6be1f58 https://www.encodeproject.org/files/ENCFF335XQU/@@download/ENCFF335XQU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF329EHG bigWig signal p-value ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189DMF, ENCFF477ZKJ 72905782 ENCODE Processing Pipeline 3f3d21f9eda0574b5c9543f73481b591 https://www.encodeproject.org/files/ENCFF329EHG/@@download/ENCFF329EHG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375BHX bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 3873715 ENCODE Processing Pipeline 566e9bcf9a35a21d6224aac4cbec49fd https://www.encodeproject.org/files/ENCFF375BHX/@@download/ENCFF375BHX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF852HEH bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF189DMF, ENCFF477ZKJ 3703379 ENCODE Processing Pipeline d33be22f266135cb7edcfa60b1c1e4a6 https://www.encodeproject.org/files/ENCFF852HEH/@@download/ENCFF852HEH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF132LKV bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF189DMF, ENCFF477ZKJ, ENCFF710SMS, ENCFF926BIU 4498903 ENCODE Processing Pipeline 2c71d0709fc116cda6a57750f3ee2851 https://www.encodeproject.org/files/ENCFF132LKV/@@download/ENCFF132LKV.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OGZ bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OHH 647269454 Richard Myers, HAIB a6b5132b35204d66234e725e207fc24e https://www.encodeproject.org/files/ENCFF000OGZ/@@download/ENCFF000OGZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OHA bigBed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZO 1256006 Richard Myers, HAIB 885d977682cfbd552205977a888396d0 https://www.encodeproject.org/files/ENCFF000OHA/@@download/ENCFF000OHA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OHB bigBed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZP 659676 Richard Myers, HAIB d3f7f3e07e0560afa5c010666fddb5b0 https://www.encodeproject.org/files/ENCFF000OHB/@@download/ENCFF000OHB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OHC bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OHO 904794966 Richard Myers, HAIB f092e703dcadae39bc6b23822d35cf98 https://www.encodeproject.org/files/ENCFF000OHC/@@download/ENCFF000OHC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OHE bigWig raw signal ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 26317942 Richard Myers, HAIB cc27a689917814fcecee01016d61448a https://www.encodeproject.org/files/ENCFF000OHE/@@download/ENCFF000OHE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OHF bigWig raw signal ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 25047592 Richard Myers, HAIB 07d05eeda195d75fefed7265e5db2fd9 https://www.encodeproject.org/files/ENCFF000OHF/@@download/ENCFF000OHF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OHH fastq reads ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 581477238 Richard Myers, HAIB 0b60c6268a7255ea7ae942a6215682fb https://www.encodeproject.org/files/ENCFF000OHH/@@download/ENCFF000OHH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OHO fastq reads ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 863934127 Richard Myers, HAIB da8e48228be3f8a5fea131d51b22f9d2 https://www.encodeproject.org/files/ENCFF000OHO/@@download/ENCFF000OHO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001TZO bed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 666520 Richard Myers, HAIB a29950c6492e8c0d60cd220391c33357 https://www.encodeproject.org/files/ENCFF001TZO/@@download/ENCFF001TZO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TZP bed broadPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 416373 Richard Myers, HAIB cfc701d0becf42a3175acd850cf8bf80 https://www.encodeproject.org/files/ENCFF001TZP/@@download/ENCFF001TZP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CIC bed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 613066 ENCODE Consortium Analysis Working Group 0eccf0b1b1a664b0b0dcef0493189e47 https://www.encodeproject.org/files/ENCFF002CIC/@@download/ENCFF002CIC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF042DNE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIC 1287683 ENCODE Consortium 4d11dd335c3360cddf8df1c0138525ac https://www.encodeproject.org/files/ENCFF042DNE/@@download/ENCFF042DNE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF289YVM bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF643CGH 442490409 ENCODE Processing Pipeline 37fd30462d8d41f254c0eb0e4b337018 https://www.encodeproject.org/files/ENCFF289YVM/@@download/ENCFF289YVM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF407NZY bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF643CGH 782971031 ENCODE Processing Pipeline bb16713de0b8a39f8a16c98fc5e3c575 https://www.encodeproject.org/files/ENCFF407NZY/@@download/ENCFF407NZY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF363ZTA bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF643CGH 1112071793 ENCODE Processing Pipeline 072ae3bdce868640c3e59b2d72e4f4fe https://www.encodeproject.org/files/ENCFF363ZTA/@@download/ENCFF363ZTA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF163HDB bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF643CGH 639062899 ENCODE Processing Pipeline 99daa5cff601df1f27f366e87e907180 https://www.encodeproject.org/files/ENCFF163HDB/@@download/ENCFF163HDB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF975UGB bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF807MUK 784451815 ENCODE Processing Pipeline e0d8ffbf24481482cb956a3edb09ce98 https://www.encodeproject.org/files/ENCFF975UGB/@@download/ENCFF975UGB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF180NKF bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF807MUK 438673705 ENCODE Processing Pipeline 227ffc1b331aae4aca01d8712b9f8436 https://www.encodeproject.org/files/ENCFF180NKF/@@download/ENCFF180NKF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF004ZLO bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF807MUK 633611087 ENCODE Processing Pipeline be07d469c7d4a64d93c44711a4787018 https://www.encodeproject.org/files/ENCFF004ZLO/@@download/ENCFF004ZLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF448GPH bam unfiltered alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF807MUK 1111772301 ENCODE Processing Pipeline cf44fc4f48c1e04cd98e6bce031eb251 https://www.encodeproject.org/files/ENCFF448GPH/@@download/ENCFF448GPH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF891FDD bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 588763568 ENCODE Processing Pipeline 59e2acbc1c34728d37ed20fd29d00309 https://www.encodeproject.org/files/ENCFF891FDD/@@download/ENCFF891FDD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF510LGI bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 335838617 ENCODE Processing Pipeline 78ee25dfd1a236f21d68f6e0fd85eccf https://www.encodeproject.org/files/ENCFF510LGI/@@download/ENCFF510LGI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF722WRN bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163HDB, ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 833402735 ENCODE Processing Pipeline b472977be83d244076ce49b5e471ad13 https://www.encodeproject.org/files/ENCFF722WRN/@@download/ENCFF722WRN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF674NNU bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163HDB, ENCFF488YYE, ENCFF562HPN 708870408 ENCODE Processing Pipeline f48bf047bbee637f9b9abec57a0afc43 https://www.encodeproject.org/files/ENCFF674NNU/@@download/ENCFF674NNU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF684PCV bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163HDB, ENCFF488YYE, ENCFF562HPN 414743977 ENCODE Processing Pipeline 62a3af623216f7c3892b42eb09d84579 https://www.encodeproject.org/files/ENCFF684PCV/@@download/ENCFF684PCV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF666IGK bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 5542575 ENCODE Processing Pipeline 2cfc97e21b2137c273877dc178e44511 https://www.encodeproject.org/files/ENCFF666IGK/@@download/ENCFF666IGK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF140ADI bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF163HDB, ENCFF488YYE, ENCFF562HPN 5752082 ENCODE Processing Pipeline a78861e998a19801700488edfd516ab4 https://www.encodeproject.org/files/ENCFF140ADI/@@download/ENCFF140ADI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF683NGY bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163HDB, ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 623187294 ENCODE Processing Pipeline ae25fbac7db02cfbc34dd4738a2a614a https://www.encodeproject.org/files/ENCFF683NGY/@@download/ENCFF683NGY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF985NQM bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF163HDB, ENCFF289YVM, ENCFF488YYE, ENCFF562HPN 6262989 ENCODE Processing Pipeline 23ff238f106741906d9ffd7c02b6288f https://www.encodeproject.org/files/ENCFF985NQM/@@download/ENCFF985NQM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF197NLU bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF666IGK 12762415 ENCODE Processing Pipeline e008580df5b44455c579f2bf75764465 https://www.encodeproject.org/files/ENCFF197NLU/@@download/ENCFF197NLU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF421WJC bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140ADI 12993601 ENCODE Processing Pipeline 8ef957e626f5c9e80ce18216f8a47df8 https://www.encodeproject.org/files/ENCFF421WJC/@@download/ENCFF421WJC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF560KGH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223MUF 979646 ENCODE Processing Pipeline add5680f557e3966da4c11af6fcd27bd https://www.encodeproject.org/files/ENCFF560KGH/@@download/ENCFF560KGH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF260TXW bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF985NQM 12984316 ENCODE Processing Pipeline a5aeeae924e2c0bb6b1d1eb16411269e https://www.encodeproject.org/files/ENCFF260TXW/@@download/ENCFF260TXW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF271FAK bed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140ADI, ENCFF419RSJ, ENCFF666IGK, ENCFF985NQM 564924 ENCODE Processing Pipeline 4c48fa0a73b3b920825a68d73dd98c5c https://www.encodeproject.org/files/ENCFF271FAK/@@download/ENCFF271FAK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF197UNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271FAK 940725 ENCODE Processing Pipeline d3ca02abbdea58381e421cb059aec09d https://www.encodeproject.org/files/ENCFF197UNQ/@@download/ENCFF197UNQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF223MUF bed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140ADI, ENCFF419RSJ, ENCFF666IGK, ENCFF985NQM 595214 ENCODE Processing Pipeline e0c1a03030d40720438ac80e3b88653f https://www.encodeproject.org/files/ENCFF223MUF/@@download/ENCFF223MUF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF654FZK bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 602082844 ENCODE Processing Pipeline da1f1b78f7af92d747e7fc474ac238fb https://www.encodeproject.org/files/ENCFF654FZK/@@download/ENCFF654FZK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF930MGB bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 336986559 ENCODE Processing Pipeline 0617b905e72cd14feffda0546e0499a9 https://www.encodeproject.org/files/ENCFF930MGB/@@download/ENCFF930MGB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF263YUU bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 658190645 ENCODE Processing Pipeline d76657fb71da57506c683feec3061157 https://www.encodeproject.org/files/ENCFF263YUU/@@download/ENCFF263YUU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF249ILB bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 417119334 ENCODE Processing Pipeline f6ff67a63bbdde29609915b1216b43fb https://www.encodeproject.org/files/ENCFF249ILB/@@download/ENCFF249ILB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF946GYF bigWig signal p-value ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004ZLO, ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 722167696 ENCODE Processing Pipeline 87098cd4c4c1da22a0202407f6580dba https://www.encodeproject.org/files/ENCFF946GYF/@@download/ENCFF946GYF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF631VCL bigWig fold change over control ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004ZLO, ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 626041426 ENCODE Processing Pipeline af2fa7e4d88e5046a692a57f9d347ab5 https://www.encodeproject.org/files/ENCFF631VCL/@@download/ENCFF631VCL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF497SWR bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF138XMK 12986914 ENCODE Processing Pipeline 92a78ea4e2ebd71ff7ffa6b05c82cc2f https://www.encodeproject.org/files/ENCFF497SWR/@@download/ENCFF497SWR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF794ILD bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 5690456 ENCODE Processing Pipeline b7a1d833bed610efdfaecd2e6c6ae8f6 https://www.encodeproject.org/files/ENCFF794ILD/@@download/ENCFF794ILD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF543MQS bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF864PVD 12761304 ENCODE Processing Pipeline 7586bdd3320dcb1517a26bf622a90bcc https://www.encodeproject.org/files/ENCFF543MQS/@@download/ENCFF543MQS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF294BZJ bed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF138XMK, ENCFF794ILD, ENCFF864PVD 559947 ENCODE Processing Pipeline a53e587a32b6cbacb2ff75b4145c632a https://www.encodeproject.org/files/ENCFF294BZJ/@@download/ENCFF294BZJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF864PVD bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 5535261 ENCODE Processing Pipeline 90807ae650d4013601096acbb16706a4 https://www.encodeproject.org/files/ENCFF864PVD/@@download/ENCFF864PVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF967ACD bed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF138XMK, ENCFF794ILD, ENCFF864PVD 602532 ENCODE Processing Pipeline a52540d0d7e72164a332058a082387ee https://www.encodeproject.org/files/ENCFF967ACD/@@download/ENCFF967ACD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF138XMK bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF004ZLO, ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 6263456 ENCODE Processing Pipeline 872dd57a1c7e43c09eb137851f3bc4ed https://www.encodeproject.org/files/ENCFF138XMK/@@download/ENCFF138XMK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF294LAS bigBed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF794ILD 12919960 ENCODE Processing Pipeline 0a660054eb7ce77bcaf6c4ea4df70c80 https://www.encodeproject.org/files/ENCFF294LAS/@@download/ENCFF294LAS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF338GRE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF294BZJ 935363 ENCODE Processing Pipeline 8656080e41af5e5bfbe57d799800703b https://www.encodeproject.org/files/ENCFF338GRE/@@download/ENCFF338GRE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF173FVR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF967ACD 988401 ENCODE Processing Pipeline 7889131856967302a4631d69ff908ccb https://www.encodeproject.org/files/ENCFF173FVR/@@download/ENCFF173FVR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001HOS bigBed broadPeak hotspots ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRJ 2673899 John Stamatoyannopoulos, UW 7e93e3aaf91b2ae59c9944661726e3f5 https://www.encodeproject.org/files/ENCFF001HOS/@@download/ENCFF001HOS.bigBed hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001HOT bigBed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRK 781428 John Stamatoyannopoulos, UW 4c97824d9cd2bea12aa60b1d8cacfbf0 https://www.encodeproject.org/files/ENCFF001HOT/@@download/ENCFF001HOT.bigBed hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001HOU bigWig raw signal ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 76586418 John Stamatoyannopoulos, UW a9a1b855e3376e815cb25beef6016eeb https://www.encodeproject.org/files/ENCFF001HOU/@@download/ENCFF001HOU.bigWig hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001HOV bam alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPF 309461447 John Stamatoyannopoulos, UW 5a5681ee84f22d232ea8ffc9b4f3fc3d https://www.encodeproject.org/files/ENCFF001HOV/@@download/ENCFF001HOV.bam hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001HPF fastq reads ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 837707496 John Stamatoyannopoulos, UW aa6ff00a4ab54912f4a981a4a5d523bb https://www.encodeproject.org/files/ENCFF001HPF/@@download/ENCFF001HPF.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HPI/ released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001XRJ bed broadPeak hotspots ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 1718416 John Stamatoyannopoulos, UW 10ffa777f8aae27d04197af154c787bc https://www.encodeproject.org/files/ENCFF001XRJ/@@download/ENCFF001XRJ.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001XRK bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 514150 John Stamatoyannopoulos, UW f951ec040d109e841c247acfdf835241 https://www.encodeproject.org/files/ENCFF001XRK/@@download/ENCFF001XRK.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF002DDA bed narrowPeak optimal idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 375499 ENCODE Consortium Analysis Working Group 2bc274678f574d811003c25e47864252 https://www.encodeproject.org/files/ENCFF002DDA/@@download/ENCFF002DDA.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF437KJT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF002DDA 820642 ENCODE Consortium 76f6adc54ff64bac754eb2db0cf8e87c https://www.encodeproject.org/files/ENCFF437KJT/@@download/ENCFF437KJT.bigBed hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF456GVM bam unfiltered alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPF, ENCFF807MUK 971758991 ENCODE Processing Pipeline cefeb3aa815dae748f7d9af38980add2 https://www.encodeproject.org/files/ENCFF456GVM/@@download/ENCFF456GVM.bam hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF340ENP bam alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPF, ENCFF807MUK 403658180 ENCODE Processing Pipeline d64ddf99eb81ce369512be9fc150ba67 https://www.encodeproject.org/files/ENCFF340ENP/@@download/ENCFF340ENP.bam hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF673ONO bigBed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF600CVY 4525950 ENCODE Processing Pipeline 144539a5aae01585fe2dd2ea372fe06c https://www.encodeproject.org/files/ENCFF673ONO/@@download/ENCFF673ONO.bigBed hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF600CVY bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF340ENP, ENCFF945XQT 2203007 ENCODE Processing Pipeline 71b6784ff98db8e9717b8eaf7cd71d5e https://www.encodeproject.org/files/ENCFF600CVY/@@download/ENCFF600CVY.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF847EGR bigWig fold change over control ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF340ENP, ENCFF945XQT 135116596 ENCODE Processing Pipeline 72249fccc606a12f7f0f4f91bf1a369d https://www.encodeproject.org/files/ENCFF847EGR/@@download/ENCFF847EGR.bigWig hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF034WZN bigWig signal p-value ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF340ENP, ENCFF945XQT 256045982 ENCODE Processing Pipeline aad08662fc09eba6d0128f7ff82aca99 https://www.encodeproject.org/files/ENCFF034WZN/@@download/ENCFF034WZN.bigWig hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF041ZEP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF600CVY 403915 ENCODE Processing Pipeline d1c0e9bedf65662ab2331dc570c36305 https://www.encodeproject.org/files/ENCFF041ZEP/@@download/ENCFF041ZEP.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF051XIW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF041ZEP 777126 ENCODE Processing Pipeline 71337cb49455bc99c7f40652b663000b https://www.encodeproject.org/files/ENCFF051XIW/@@download/ENCFF051XIW.bigBed hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF397REA bam unfiltered alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPF, ENCFF643CGH 974212500 ENCODE Processing Pipeline 6c0dd5212011677cdb7d1ed38c44b6df https://www.encodeproject.org/files/ENCFF397REA/@@download/ENCFF397REA.bam GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF525MRS bam alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPF, ENCFF643CGH 403400647 ENCODE Processing Pipeline a7135f77dedb2fdcfe4a229f39fe201b https://www.encodeproject.org/files/ENCFF525MRS/@@download/ENCFF525MRS.bam GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF152JZK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF481FOQ 409734 ENCODE Processing Pipeline 330c6203864c6ab054fb89d40fde6a9e https://www.encodeproject.org/files/ENCFF152JZK/@@download/ENCFF152JZK.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF909ULI bigWig signal p-value ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF337ZUN, ENCFF525MRS 273187997 ENCODE Processing Pipeline d1970c5148fecdcd316882d9ce9fca1b https://www.encodeproject.org/files/ENCFF909ULI/@@download/ENCFF909ULI.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF914EDX bigWig fold change over control ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF337ZUN, ENCFF525MRS 134814337 ENCODE Processing Pipeline 3475a6b6045e7bb20df127bcba3ede01 https://www.encodeproject.org/files/ENCFF914EDX/@@download/ENCFF914EDX.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF481FOQ bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF337ZUN, ENCFF525MRS 2200843 ENCODE Processing Pipeline a06423cc94fdce62cdcf6fded7e39fd4 https://www.encodeproject.org/files/ENCFF481FOQ/@@download/ENCFF481FOQ.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF998PWW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF152JZK 786575 ENCODE Processing Pipeline ab8112f8d575ebc9d9760d152eee08dd https://www.encodeproject.org/files/ENCFF998PWW/@@download/ENCFF998PWW.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF174QTP bigBed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF481FOQ 4524097 ENCODE Processing Pipeline 38e16a620f5c4846e44303f10b8ddf1b https://www.encodeproject.org/files/ENCFF174QTP/@@download/ENCFF174QTP.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001HMW bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HNI 303323535 John Stamatoyannopoulos, UW 2fe57b4ff9c449445b3cd2ab5dce22bd https://www.encodeproject.org/files/ENCFF001HMW/@@download/ENCFF001HMW.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HMX bigBed broadPeak hotspots ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQV 2477293 John Stamatoyannopoulos, UW bc5bdd59cd0d2ff92a8fd287deac30a5 https://www.encodeproject.org/files/ENCFF001HMX/@@download/ENCFF001HMX.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HMY bigBed broadPeak hotspots ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQW 4799927 John Stamatoyannopoulos, UW 29924b60ed469e3be58f8b15ec70ceb1 https://www.encodeproject.org/files/ENCFF001HMY/@@download/ENCFF001HMY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HMZ bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQX 848366 John Stamatoyannopoulos, UW c3e54a5bd93d6d618045d39ec7b6021a https://www.encodeproject.org/files/ENCFF001HMZ/@@download/ENCFF001HMZ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HNA bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNP 418746439 John Stamatoyannopoulos, UW e540ec85a611ba1b560cce4d7613ad9b https://www.encodeproject.org/files/ENCFF001HNA/@@download/ENCFF001HNA.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HNB bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQY 1176869 John Stamatoyannopoulos, UW f27f5d9328dc6832c48f2cf85f03712d https://www.encodeproject.org/files/ENCFF001HNB/@@download/ENCFF001HNB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HND bigWig raw signal ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMW 59063947 John Stamatoyannopoulos, UW 59a78836684bd48ffe9efac3cd45ecd7 https://www.encodeproject.org/files/ENCFF001HND/@@download/ENCFF001HND.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HNE bigWig raw signal ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNA 89388963 John Stamatoyannopoulos, UW fd3b876fb81b582722377d79959c0cec https://www.encodeproject.org/files/ENCFF001HNE/@@download/ENCFF001HNE.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HNI fastq reads ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 534971248 John Stamatoyannopoulos, UW 8f3ac615c1744db3b046b585d0bda37f https://www.encodeproject.org/files/ENCFF001HNI/@@download/ENCFF001HNI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HNS/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001HNP fastq reads ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 734118405 John Stamatoyannopoulos, UW 42c3d67b6746b8a81a7d74a7bab1e8a6 https://www.encodeproject.org/files/ENCFF001HNP/@@download/ENCFF001HNP.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HNS/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001XQV bed broadPeak hotspots ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMW 1633976 John Stamatoyannopoulos, UW 72e80af14cf27007534222d4c671908d https://www.encodeproject.org/files/ENCFF001XQV/@@download/ENCFF001XQV.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001XQW bed broadPeak hotspots ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNA 2623652 John Stamatoyannopoulos, UW b237895ff4e346ef422e3a22da9c7c66 https://www.encodeproject.org/files/ENCFF001XQW/@@download/ENCFF001XQW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001XQX bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMW 574911 John Stamatoyannopoulos, UW 9bd5ffe43d837018ccaafa5789bb86ec https://www.encodeproject.org/files/ENCFF001XQX/@@download/ENCFF001XQX.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF001XQY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNA 851723 John Stamatoyannopoulos, UW 01250d7daafd7557c591fb9991464bb5 https://www.encodeproject.org/files/ENCFF001XQY/@@download/ENCFF001XQY.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF002DCW bed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HMW, ENCFF001HNA 741203 ENCODE Consortium Analysis Working Group 616e2c2dddba644e8583216930f04db4 https://www.encodeproject.org/files/ENCFF002DCW/@@download/ENCFF002DCW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF961DNU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCW 1324368 ENCODE Consortium 900aeaa9444dced410d155c8a6c33f9a https://www.encodeproject.org/files/ENCFF961DNU/@@download/ENCFF961DNU.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF075OSG bam unfiltered alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNI, ENCFF643CGH 544786355 ENCODE Processing Pipeline 9265daa38823ab40be81429c06f36958 https://www.encodeproject.org/files/ENCFF075OSG/@@download/ENCFF075OSG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF639IFG bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNI, ENCFF643CGH 188746385 ENCODE Processing Pipeline 9b1c0b9f4dd55c40acd2a5ccb58cef15 https://www.encodeproject.org/files/ENCFF639IFG/@@download/ENCFF639IFG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF070XOR bam unfiltered alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HNP, ENCFF643CGH 777803685 ENCODE Processing Pipeline ef7b963ddd4cc4618813069d34ac3be6 https://www.encodeproject.org/files/ENCFF070XOR/@@download/ENCFF070XOR.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF691NNZ bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HNP, ENCFF643CGH 366534910 ENCODE Processing Pipeline 63e7d7e69c7089f8d11abe0dec606637 https://www.encodeproject.org/files/ENCFF691NNZ/@@download/ENCFF691NNZ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF205HBF bam unfiltered alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNI, ENCFF807MUK 543664693 ENCODE Processing Pipeline 8381ab18203a56980cfc53cc23ff82aa https://www.encodeproject.org/files/ENCFF205HBF/@@download/ENCFF205HBF.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF872VKZ bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HNP, ENCFF807MUK 366712494 ENCODE Processing Pipeline 5c19359e49771e9b85549a2034de49a8 https://www.encodeproject.org/files/ENCFF872VKZ/@@download/ENCFF872VKZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF860DZG bam unfiltered alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HNP, ENCFF807MUK 776635230 ENCODE Processing Pipeline 129b51d471ec013d4d5c596548f81cc1 https://www.encodeproject.org/files/ENCFF860DZG/@@download/ENCFF860DZG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF122HJS bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNI, ENCFF807MUK 188862010 ENCODE Processing Pipeline 231bba4c0bcebee02a4a7734b9e3ca62 https://www.encodeproject.org/files/ENCFF122HJS/@@download/ENCFF122HJS.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF108HLD bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF600JCP 5043165 ENCODE Processing Pipeline 0c978da3bc9a7661991bbe4adc7d756a https://www.encodeproject.org/files/ENCFF108HLD/@@download/ENCFF108HLD.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF901QGY bigWig signal p-value ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF639IFG 234321126 ENCODE Processing Pipeline aea340a75c96c4785f78949c5a252191 https://www.encodeproject.org/files/ENCFF901QGY/@@download/ENCFF901QGY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF155DHA bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF639IFG 1773215 ENCODE Processing Pipeline 08c06e8338e994118dd421201622780e https://www.encodeproject.org/files/ENCFF155DHA/@@download/ENCFF155DHA.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF961EMH bigWig fold change over control ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF639IFG 83519741 ENCODE Processing Pipeline 6f42088e2c90768ff87e17d99c77120e https://www.encodeproject.org/files/ENCFF961EMH/@@download/ENCFF961EMH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF171DEC bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF155DHA 3829719 ENCODE Processing Pipeline 848bf19797a8d1fa3c3a007b1e8e1586 https://www.encodeproject.org/files/ENCFF171DEC/@@download/ENCFF171DEC.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF380SSU bigWig signal p-value ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF691NNZ 289874150 ENCODE Processing Pipeline 3a901d28d654442fba6b47e81998ee0b https://www.encodeproject.org/files/ENCFF380SSU/@@download/ENCFF380SSU.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF428HGV bigWig signal p-value ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF639IFG, ENCFF691NNZ 291551255 ENCODE Processing Pipeline f157b9e151148bb718d7e16114c23a6c https://www.encodeproject.org/files/ENCFF428HGV/@@download/ENCFF428HGV.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF622ICI bigWig fold change over control ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF691NNZ 137327593 ENCODE Processing Pipeline 83956d9ca9a87c04fc4afa8da9d66fc1 https://www.encodeproject.org/files/ENCFF622ICI/@@download/ENCFF622ICI.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF427RQE bigWig fold change over control ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF639IFG, ENCFF691NNZ 206790395 ENCODE Processing Pipeline 6b44ef1c84ed35a67466e40a0b2743b2 https://www.encodeproject.org/files/ENCFF427RQE/@@download/ENCFF427RQE.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF471EJJ bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF639IFG, ENCFF691NNZ 4132056 ENCODE Processing Pipeline 068d25c3c200f9790bc1b0ba4cde5794 https://www.encodeproject.org/files/ENCFF471EJJ/@@download/ENCFF471EJJ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF275VGQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF913REJ 1066384 ENCODE Processing Pipeline 23ff813537c2f1412b5a47d7b5d59bca https://www.encodeproject.org/files/ENCFF275VGQ/@@download/ENCFF275VGQ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF154APE bed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF155DHA, ENCFF419RSJ, ENCFF471EJJ, ENCFF600JCP 631133 ENCODE Processing Pipeline 341543539827d1820a15c3813c78b171 https://www.encodeproject.org/files/ENCFF154APE/@@download/ENCFF154APE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF860HNE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF154APE 1159590 ENCODE Processing Pipeline 2350cefae076b276f4519402110550c5 https://www.encodeproject.org/files/ENCFF860HNE/@@download/ENCFF860HNE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF600JCP bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF691NNZ 2425526 ENCODE Processing Pipeline 85dc2afa15ac3455715440ace1ba73fb https://www.encodeproject.org/files/ENCFF600JCP/@@download/ENCFF600JCP.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF653LAP bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF471EJJ 10170739 ENCODE Processing Pipeline bb1b99c68d6df268759148cc70808cf3 https://www.encodeproject.org/files/ENCFF653LAP/@@download/ENCFF653LAP.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF913REJ bed narrowPeak conservative idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF155DHA, ENCFF419RSJ, ENCFF471EJJ, ENCFF600JCP 560800 ENCODE Processing Pipeline 3c5389afe7b67453c9ca531ad2b93873 https://www.encodeproject.org/files/ENCFF913REJ/@@download/ENCFF913REJ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF202FGG bigWig signal p-value ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF111FGZ, ENCFF122HJS 249757214 ENCODE Processing Pipeline fe0f33550e1ee6da0f2a708f72d763f4 https://www.encodeproject.org/files/ENCFF202FGG/@@download/ENCFF202FGG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF877WRG bigWig signal p-value ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF111FGZ, ENCFF872VKZ 246459842 ENCODE Processing Pipeline 80015e94b9b9561f122f3e402c2218a4 https://www.encodeproject.org/files/ENCFF877WRG/@@download/ENCFF877WRG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF040FXL bigWig signal p-value ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF111FGZ, ENCFF122HJS, ENCFF872VKZ 345341839 ENCODE Processing Pipeline 5b098981b706b2ae1bc85a58b655f03e https://www.encodeproject.org/files/ENCFF040FXL/@@download/ENCFF040FXL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF975KPX bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF242KOJ 5039913 ENCODE Processing Pipeline 896520e36812468cc352321c91b6563b https://www.encodeproject.org/files/ENCFF975KPX/@@download/ENCFF975KPX.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF308NHO bigWig fold change over control ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF111FGZ, ENCFF122HJS 83541456 ENCODE Processing Pipeline cb1b095402277e3cdc5aea1ad16842e2 https://www.encodeproject.org/files/ENCFF308NHO/@@download/ENCFF308NHO.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF830KSV bed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF155SMN, ENCFF242KOJ, ENCFF263ZIY 629516 ENCODE Processing Pipeline e3851124fbda85eda9007e79e17f7d74 https://www.encodeproject.org/files/ENCFF830KSV/@@download/ENCFF830KSV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF155SMN bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF111FGZ, ENCFF122HJS, ENCFF872VKZ 4115754 ENCODE Processing Pipeline 26bd1ceb93390ab5c3465621b44443e2 https://www.encodeproject.org/files/ENCFF155SMN/@@download/ENCFF155SMN.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF473BWG bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF263ZIY 3705561 ENCODE Processing Pipeline d636c61a8048b184a614ba62d1abf716 https://www.encodeproject.org/files/ENCFF473BWG/@@download/ENCFF473BWG.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF073HFL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF830KSV 1157169 ENCODE Processing Pipeline f5db30d3cf6c6c3cc4d8a1feccd28613 https://www.encodeproject.org/files/ENCFF073HFL/@@download/ENCFF073HFL.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF004JXY bigWig fold change over control ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF111FGZ, ENCFF122HJS, ENCFF872VKZ 204732141 ENCODE Processing Pipeline 6bde790e2e5d5a47e492a59739da7b0b https://www.encodeproject.org/files/ENCFF004JXY/@@download/ENCFF004JXY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF242KOJ bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF111FGZ, ENCFF872VKZ 2425519 ENCODE Processing Pipeline 8245ad26b6b0b5b41a58e3cefc7efe07 https://www.encodeproject.org/files/ENCFF242KOJ/@@download/ENCFF242KOJ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF971ESX bed narrowPeak conservative idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF155SMN, ENCFF242KOJ, ENCFF263ZIY 560689 ENCODE Processing Pipeline ff59a2162c5e3b7f35a700c61cadf433 https://www.encodeproject.org/files/ENCFF971ESX/@@download/ENCFF971ESX.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF694WLV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF971ESX 1065639 ENCODE Processing Pipeline 0ea616dfca3effc339f1a61ddddf4ea5 https://www.encodeproject.org/files/ENCFF694WLV/@@download/ENCFF694WLV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF121ZQF bigWig fold change over control ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF111FGZ, ENCFF872VKZ 137260121 ENCODE Processing Pipeline ee53ff8eaaafd8d54b93c97604d09e2f https://www.encodeproject.org/files/ENCFF121ZQF/@@download/ENCFF121ZQF.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF263ZIY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF111FGZ, ENCFF122HJS 1727029 ENCODE Processing Pipeline 9907af9e5ad7594d5220fd9863fde372 https://www.encodeproject.org/files/ENCFF263ZIY/@@download/ENCFF263ZIY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF669CAA bigBed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF155SMN 10130139 ENCODE Processing Pipeline 4666724514d3cdb209defc155dad2572 https://www.encodeproject.org/files/ENCFF669CAA/@@download/ENCFF669CAA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF000PHA bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PHP 894265663 Richard Myers, HAIB 8b7fc681260515ab8af8ca49624b8cd3 https://www.encodeproject.org/files/ENCFF000PHA/@@download/ENCFF000PHA.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PHB bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PHM 795779058 Richard Myers, HAIB 7f7a0b731e1608acbda38e28954d3c30 https://www.encodeproject.org/files/ENCFF000PHB/@@download/ENCFF000PHB.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PHC bigBed broadPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFQ 461150 Richard Myers, HAIB 1ead84d92eaa83b38350d788b6f0a2d1 https://www.encodeproject.org/files/ENCFF000PHC/@@download/ENCFF000PHC.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PHD bigBed broadPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFR 564696 Richard Myers, HAIB 51035568107847bca1b00768ad6e54c6 https://www.encodeproject.org/files/ENCFF000PHD/@@download/ENCFF000PHD.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PHF bigWig raw signal ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 16821541 Richard Myers, HAIB 913ced893ed93c6d73e8b055ec692050 https://www.encodeproject.org/files/ENCFF000PHF/@@download/ENCFF000PHF.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PHH bigWig raw signal ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 13344856 Richard Myers, HAIB 8b7af51eb558844b97c5d3d26d2aab80 https://www.encodeproject.org/files/ENCFF000PHH/@@download/ENCFF000PHH.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PHM fastq reads ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 717724257 Richard Myers, HAIB ff7e138a59ee1766c35b2611056bedef https://www.encodeproject.org/files/ENCFF000PHM/@@download/ENCFF000PHM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, low read depth biological replicates with identical biosample ENCFF000PHP fastq reads ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 778014245 Richard Myers, HAIB 3c39b94a12fca08614134706d48025fe https://www.encodeproject.org/files/ENCFF000PHP/@@download/ENCFF000PHP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, low read depth biological replicates with identical biosample ENCFF001UFQ bed broadPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 251629 Richard Myers, HAIB cb0aa339f492621d69f92eee6ccde2f1 https://www.encodeproject.org/files/ENCFF001UFQ/@@download/ENCFF001UFQ.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UFR bed broadPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 313975 Richard Myers, HAIB b4a909a798cddcb0833a8a96552484bd https://www.encodeproject.org/files/ENCFF001UFR/@@download/ENCFF001UFR.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CKG bed narrowPeak optimal idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 454270 ENCODE Consortium Analysis Working Group 9a253e2d8586d1180b2c4629c75a7d23 https://www.encodeproject.org/files/ENCFF002CKG/@@download/ENCFF002CKG.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF654FDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKG 1125582 ENCODE Consortium ea19e0d950c7e329bda9e008c1151e8a https://www.encodeproject.org/files/ENCFF654FDA/@@download/ENCFF654FDA.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF912KZI bam unfiltered alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHM, ENCFF643CGH 915546022 ENCODE Processing Pipeline 1db6ba6a8cece9b82de826e2925b9a59 https://www.encodeproject.org/files/ENCFF912KZI/@@download/ENCFF912KZI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF930EXY bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHM, ENCFF643CGH 621893194 ENCODE Processing Pipeline 40d33abb66b12e2c281d1ccfcbb9873b https://www.encodeproject.org/files/ENCFF930EXY/@@download/ENCFF930EXY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF420PHM bam unfiltered alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHP, ENCFF643CGH 1054005883 ENCODE Processing Pipeline c301909c7007c20742efce6b03fe69dd https://www.encodeproject.org/files/ENCFF420PHM/@@download/ENCFF420PHM.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF418EVV bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHP, ENCFF643CGH 691222732 ENCODE Processing Pipeline 8f382f96185d4ff77d6461257262ae58 https://www.encodeproject.org/files/ENCFF418EVV/@@download/ENCFF418EVV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF386BYM bam unfiltered alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHM, ENCFF807MUK 912494423 ENCODE Processing Pipeline 5f0a7bad96ed64730f5110b4b5ab2383 https://www.encodeproject.org/files/ENCFF386BYM/@@download/ENCFF386BYM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF319HSK bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHM, ENCFF807MUK 622207480 ENCODE Processing Pipeline 6fae728c3659535289b1138b2b666310 https://www.encodeproject.org/files/ENCFF319HSK/@@download/ENCFF319HSK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF081HCC bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHP, ENCFF807MUK 691538155 ENCODE Processing Pipeline 675268d781719a127f7414e6be8969d8 https://www.encodeproject.org/files/ENCFF081HCC/@@download/ENCFF081HCC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF648SQX bam unfiltered alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHP, ENCFF807MUK 1050876839 ENCODE Processing Pipeline 4c075084de0035c6ba1add382bd10e80 https://www.encodeproject.org/files/ENCFF648SQX/@@download/ENCFF648SQX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF555TME bigWig signal p-value ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175NMQ, ENCFF930EXY 454816404 ENCODE Processing Pipeline c4fac56f5ea56dab79cfb6a4b32cca57 https://www.encodeproject.org/files/ENCFF555TME/@@download/ENCFF555TME.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF202EAL bigWig signal p-value ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF418EVV 526992028 ENCODE Processing Pipeline 420251d69afd8b7c494718eed51ec3d4 https://www.encodeproject.org/files/ENCFF202EAL/@@download/ENCFF202EAL.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF243HPU bigWig signal p-value ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175NMQ, ENCFF285LVE, ENCFF418EVV, ENCFF930EXY 757499629 ENCODE Processing Pipeline 611e3ba3afd8e9939aa60e9239d3c32b https://www.encodeproject.org/files/ENCFF243HPU/@@download/ENCFF243HPU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF592MEJ bigWig fold change over control ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF418EVV 359857636 ENCODE Processing Pipeline 345ccab6186023e9bb521757df08ac54 https://www.encodeproject.org/files/ENCFF592MEJ/@@download/ENCFF592MEJ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF938ZUJ bigWig fold change over control ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175NMQ, ENCFF930EXY 336694342 ENCODE Processing Pipeline 2f03a86854f4c4d11bb52e2eb57abeca https://www.encodeproject.org/files/ENCFF938ZUJ/@@download/ENCFF938ZUJ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF979PVN bigWig fold change over control ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175NMQ, ENCFF285LVE, ENCFF418EVV, ENCFF930EXY 780746965 ENCODE Processing Pipeline 853143581e34ce16bc93b1599cb1287e https://www.encodeproject.org/files/ENCFF979PVN/@@download/ENCFF979PVN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF178KNN bigBed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF047ASF 11002670 ENCODE Processing Pipeline 9dd38e61028066373f759e5f612192bd https://www.encodeproject.org/files/ENCFF178KNN/@@download/ENCFF178KNN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF047ASF bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF418EVV 5032062 ENCODE Processing Pipeline b4be2b473de1ee990d933703d47f420d https://www.encodeproject.org/files/ENCFF047ASF/@@download/ENCFF047ASF.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF707MYD bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175NMQ, ENCFF285LVE, ENCFF418EVV, ENCFF930EXY 6001424 ENCODE Processing Pipeline 6018d0c295a3224873a7034ece1cace0 https://www.encodeproject.org/files/ENCFF707MYD/@@download/ENCFF707MYD.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF315YYL bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175NMQ, ENCFF930EXY 4680505 ENCODE Processing Pipeline abd5034c60bea2c1a73e79c678393c8a https://www.encodeproject.org/files/ENCFF315YYL/@@download/ENCFF315YYL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF894FKT bigBed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF315YYL 10689397 ENCODE Processing Pipeline 2064caf685d860aa7d2322625d150388 https://www.encodeproject.org/files/ENCFF894FKT/@@download/ENCFF894FKT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF541XKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF840RWO 705525 ENCODE Processing Pipeline fce9460de28a5e67899e35bf02d78e73 https://www.encodeproject.org/files/ENCFF541XKB/@@download/ENCFF541XKB.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF158HPH bigBed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF707MYD 13557761 ENCODE Processing Pipeline dd737cec0fc004de43c4fcac018e03cd https://www.encodeproject.org/files/ENCFF158HPH/@@download/ENCFF158HPH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF840RWO bed narrowPeak optimal idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF047ASF, ENCFF315YYL, ENCFF419RSJ, ENCFF707MYD 375426 ENCODE Processing Pipeline 62d1f811c24b215f6b5501fe53ed41fd https://www.encodeproject.org/files/ENCFF840RWO/@@download/ENCFF840RWO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF390NSZ bed narrowPeak conservative idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF047ASF, ENCFF315YYL, ENCFF419RSJ, ENCFF707MYD 338919 ENCODE Processing Pipeline 1582e8c0815cc61b3d476713ce41142b https://www.encodeproject.org/files/ENCFF390NSZ/@@download/ENCFF390NSZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF853ZLQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF390NSZ 654944 ENCODE Processing Pipeline 6674e34afa2e10fcd39be11dc11b1d0d https://www.encodeproject.org/files/ENCFF853ZLQ/@@download/ENCFF853ZLQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF392ICT bigWig fold change over control ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF319HSK, ENCFF382BNF 341329069 ENCODE Processing Pipeline 7252e93725654c4235053481b58f1d13 https://www.encodeproject.org/files/ENCFF392ICT/@@download/ENCFF392ICT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF573GDY bigWig fold change over control ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081HCC, ENCFF319HSK, ENCFF346RZT, ENCFF382BNF 789534145 ENCODE Processing Pipeline e69906292e028d1fa2607d59c785baab https://www.encodeproject.org/files/ENCFF573GDY/@@download/ENCFF573GDY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF027VTF bigWig signal p-value ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF081HCC, ENCFF346RZT 425933328 ENCODE Processing Pipeline e466203dd262f6703b86ae755becf0e7 https://www.encodeproject.org/files/ENCFF027VTF/@@download/ENCFF027VTF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF875YOA bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF081HCC, ENCFF346RZT 4956830 ENCODE Processing Pipeline ac0997f671ddfa3fc9478e5f5a0ff674 https://www.encodeproject.org/files/ENCFF875YOA/@@download/ENCFF875YOA.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF058SVD bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF319HSK, ENCFF382BNF 4656074 ENCODE Processing Pipeline 47a4ac6d52ba1dfc37fe3d79f2b185bd https://www.encodeproject.org/files/ENCFF058SVD/@@download/ENCFF058SVD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF476VRC bigBed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058SVD 10668825 ENCODE Processing Pipeline 88cc25343456d2fe5295f2bcf52a62fd https://www.encodeproject.org/files/ENCFF476VRC/@@download/ENCFF476VRC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF303MUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF786XDZ 643250 ENCODE Processing Pipeline dccf8456a952b18a02b9033adffb1d63 https://www.encodeproject.org/files/ENCFF303MUF/@@download/ENCFF303MUF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF682FZZ bigWig fold change over control ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF081HCC, ENCFF346RZT 368462966 ENCODE Processing Pipeline 2a1d12577013a25f108a064cf77f4972 https://www.encodeproject.org/files/ENCFF682FZZ/@@download/ENCFF682FZZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF050KZE bigWig signal p-value ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF319HSK, ENCFF382BNF 399128781 ENCODE Processing Pipeline 9cf09a5b6bab6a74a552a302a5177a89 https://www.encodeproject.org/files/ENCFF050KZE/@@download/ENCFF050KZE.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF102IVS bigWig signal p-value ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081HCC, ENCFF319HSK, ENCFF346RZT, ENCFF382BNF 944367376 ENCODE Processing Pipeline 987a5fb0a690e814ccc50585bbea2bf4 https://www.encodeproject.org/files/ENCFF102IVS/@@download/ENCFF102IVS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF786XDZ bed narrowPeak conservative idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF058SVD, ENCFF648CTU, ENCFF875YOA 332454 ENCODE Processing Pipeline 4abd6e23737aab539142d8beb1007b0b https://www.encodeproject.org/files/ENCFF786XDZ/@@download/ENCFF786XDZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF747CHL bed narrowPeak optimal idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF058SVD, ENCFF648CTU, ENCFF875YOA 363757 ENCODE Processing Pipeline 6cf30a6eafb808ec9250617a5b968d49 https://www.encodeproject.org/files/ENCFF747CHL/@@download/ENCFF747CHL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF618WIS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF747CHL 685390 ENCODE Processing Pipeline 39f00eed74598a7753c8160e09c66730 https://www.encodeproject.org/files/ENCFF618WIS/@@download/ENCFF618WIS.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF648CTU bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081HCC, ENCFF319HSK, ENCFF346RZT, ENCFF382BNF 5978529 ENCODE Processing Pipeline 0593842b03cbdb65575e86ea3e0f70bc https://www.encodeproject.org/files/ENCFF648CTU/@@download/ENCFF648CTU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF660FJQ bigBed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF875YOA 10915630 ENCODE Processing Pipeline d46eaa8ca083c2232f6bebf165f1f791 https://www.encodeproject.org/files/ENCFF660FJQ/@@download/ENCFF660FJQ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF747DOJ bigBed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF648CTU 13527342 ENCODE Processing Pipeline 7d71a00495a85190cd4b3b70469e34dd https://www.encodeproject.org/files/ENCFF747DOJ/@@download/ENCFF747DOJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NHZ bam alignments ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NIP 1527564652 Richard Myers, HAIB d16e360a82b358bb3791aec75a6f21f1 https://www.encodeproject.org/files/ENCFF000NHZ/@@download/ENCFF000NHZ.bam hg19 released biological replicates with identical biosample ENCFF000NIA bigBed broadPeak peaks ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TTV 381150 Richard Myers, HAIB 23268b1a36d3db24a3147d50cef18d4a https://www.encodeproject.org/files/ENCFF000NIA/@@download/ENCFF000NIA.bigBed hg19 released biological replicates with identical biosample ENCFF000NIB bigBed broadPeak peaks ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TTW 230760 Richard Myers, HAIB 9050c5189bc81f35cd693fa4197d7621 https://www.encodeproject.org/files/ENCFF000NIB/@@download/ENCFF000NIB.bigBed hg19 released biological replicates with identical biosample ENCFF000NIC bam alignments ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NIM 839849513 Richard Myers, HAIB 509636361e57ba099568ca2058d54330 https://www.encodeproject.org/files/ENCFF000NIC/@@download/ENCFF000NIC.bam hg19 released biological replicates with identical biosample ENCFF000NIE bigWig raw signal ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 150148103 Richard Myers, HAIB 2a93c98747047968fdc6af4cc0cde256 https://www.encodeproject.org/files/ENCFF000NIE/@@download/ENCFF000NIE.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NIF bigWig raw signal ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 103166805 Richard Myers, HAIB 441e738316db3adb6655cc0504c29b2e https://www.encodeproject.org/files/ENCFF000NIF/@@download/ENCFF000NIF.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NIM fastq reads ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 841017092 Richard Myers, HAIB aef11e59f37af3940b98b6c84184cf86 https://www.encodeproject.org/files/ENCFF000NIM/@@download/ENCFF000NIM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGK/ released biological replicates with identical biosample ENCFF000NIP fastq reads ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1545065990 Richard Myers, HAIB 9da7ea771a497595549fcb29d6a2a085 https://www.encodeproject.org/files/ENCFF000NIP/@@download/ENCFF000NIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF001TTV bed broadPeak peaks ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 186383 Richard Myers, HAIB 086809f4eac3014981419bb184a6be0a https://www.encodeproject.org/files/ENCFF001TTV/@@download/ENCFF001TTV.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TTW bed broadPeak peaks ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 92548 Richard Myers, HAIB 136be048b0682dcc746aea208e3a878c https://www.encodeproject.org/files/ENCFF001TTW/@@download/ENCFF001TTW.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000YKD bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YKZ 307347314 Michael Snyder, Stanford b6cf994d3e493ca6e6721be55b9fe07f https://www.encodeproject.org/files/ENCFF000YKD/@@download/ENCFF000YKD.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000YKE bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMS 1818330 Michael Snyder, Stanford a5707b53e662b8b8e0aebb6ab103ba28 https://www.encodeproject.org/files/ENCFF000YKE/@@download/ENCFF000YKE.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000YKF bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YLA 414398470 Michael Snyder, Stanford 8f6edf164b9db5934f598cbf6c8156e8 https://www.encodeproject.org/files/ENCFF000YKF/@@download/ENCFF000YKF.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000YKG bigWig signal ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 250311859 Michael Snyder, Stanford 46987ad2b599d83801522a8ce14317af https://www.encodeproject.org/files/ENCFF000YKG/@@download/ENCFF000YKG.bigWig hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000YKZ fastq reads ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1047672501 Michael Snyder, Stanford dccd38a50739ebd3aee89d776745b94d https://www.encodeproject.org/files/ENCFF000YKZ/@@download/ENCFF000YKZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000YLA fastq reads ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 775033480 Michael Snyder, Stanford 8a340f8d8b918f1449c80213033e4a52 https://www.encodeproject.org/files/ENCFF000YLA/@@download/ENCFF000YLA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF001VMS bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 746853 Michael Snyder, Stanford a578f5369f477f5344dcab4b71263c6b https://www.encodeproject.org/files/ENCFF001VMS/@@download/ENCFF001VMS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002CWF bed narrowPeak optimal idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 680076 ENCODE Consortium Analysis Working Group 97fdb036134d390f6ab03921b34aaffe https://www.encodeproject.org/files/ENCFF002CWF/@@download/ENCFF002CWF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF581MRK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWF 1446585 ENCODE Consortium 4513b00cbab6f4a0b89a6a514bfc1a5c https://www.encodeproject.org/files/ENCFF581MRK/@@download/ENCFF581MRK.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF239WGU bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YKZ, ENCFF643CGH 541778030 ENCODE Processing Pipeline defe79b1ad642d1ee6703330b7824c49 https://www.encodeproject.org/files/ENCFF239WGU/@@download/ENCFF239WGU.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF836IMK bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YLA, ENCFF643CGH 502999154 ENCODE Processing Pipeline 6530c1ad8bcb55773d9bc36097c98042 https://www.encodeproject.org/files/ENCFF836IMK/@@download/ENCFF836IMK.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF229LOS bam unfiltered alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YLA, ENCFF643CGH 813041979 ENCODE Processing Pipeline a56ab5192573652d2804de56fbe886c7 https://www.encodeproject.org/files/ENCFF229LOS/@@download/ENCFF229LOS.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF845YTU bigWig fold change over control ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF239WGU, ENCFF942FFX 206470255 ENCODE Processing Pipeline e70ca87f7ce339062e8d1b34ba6d439e https://www.encodeproject.org/files/ENCFF845YTU/@@download/ENCFF845YTU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF207JFR bam unfiltered alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YKZ, ENCFF643CGH 1049437869 ENCODE Processing Pipeline a2aef3d0e12c7a3685fa8993f34c0e85 https://www.encodeproject.org/files/ENCFF207JFR/@@download/ENCFF207JFR.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF389SMU bigWig signal p-value ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF239WGU, ENCFF942FFX 234113786 ENCODE Processing Pipeline 3c780899db1bbe18857b690573987613 https://www.encodeproject.org/files/ENCFF389SMU/@@download/ENCFF389SMU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF139YUD bigWig signal p-value ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF239WGU, ENCFF836IMK, ENCFF942FFX 231927298 ENCODE Processing Pipeline 0331c4d5e1739f83eddfd03072a1e07c https://www.encodeproject.org/files/ENCFF139YUD/@@download/ENCFF139YUD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF023ZEL bigWig fold change over control ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF836IMK, ENCFF942FFX 231679736 ENCODE Processing Pipeline 3580cdb652159f360a1e715c0ec911bb https://www.encodeproject.org/files/ENCFF023ZEL/@@download/ENCFF023ZEL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF053RYJ bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF017FSY 12575741 ENCODE Processing Pipeline cc6401c3831c3b2216e6fce646b530c6 https://www.encodeproject.org/files/ENCFF053RYJ/@@download/ENCFF053RYJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF568GZL bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF233XAJ 12944959 ENCODE Processing Pipeline 9aad78fda7923926759b4619a005d693 https://www.encodeproject.org/files/ENCFF568GZL/@@download/ENCFF568GZL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF838NIW bed narrowPeak conservative idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF017FSY, ENCFF208AQB, ENCFF233XAJ, ENCFF419RSJ 475230 ENCODE Processing Pipeline 0992be8bd52a2579a88603345856d39e https://www.encodeproject.org/files/ENCFF838NIW/@@download/ENCFF838NIW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF005BUL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF605WXD 1201176 ENCODE Processing Pipeline c854b53e6e2ca071b1def685011e53ee https://www.encodeproject.org/files/ENCFF005BUL/@@download/ENCFF005BUL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF605WXD bed narrowPeak optimal idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF017FSY, ENCFF208AQB, ENCFF233XAJ, ENCFF419RSJ 653860 ENCODE Processing Pipeline 2650cfd5835a8475a07ff6d8c27ed722 https://www.encodeproject.org/files/ENCFF605WXD/@@download/ENCFF605WXD.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF266TBL bigWig signal p-value ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF836IMK, ENCFF942FFX 237621134 ENCODE Processing Pipeline baff4b7373d173f19cfa1b4b2586f0af https://www.encodeproject.org/files/ENCFF266TBL/@@download/ENCFF266TBL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF667QJZ bigWig fold change over control ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF239WGU, ENCFF836IMK, ENCFF942FFX 392424463 ENCODE Processing Pipeline 76d2acd9b09e2ec8284fdf457a8c9114 https://www.encodeproject.org/files/ENCFF667QJZ/@@download/ENCFF667QJZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF208AQB bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF239WGU, ENCFF942FFX 4216435 ENCODE Processing Pipeline 0c9221e75e6e0dea22f90ce9b71c0f1d https://www.encodeproject.org/files/ENCFF208AQB/@@download/ENCFF208AQB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF552AMR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF838NIW 934126 ENCODE Processing Pipeline bcf458b50fe9075cef2f50603302c571 https://www.encodeproject.org/files/ENCFF552AMR/@@download/ENCFF552AMR.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF017FSY bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF836IMK, ENCFF942FFX 5174718 ENCODE Processing Pipeline 2d207f4129d811671fae0cb3bed472a3 https://www.encodeproject.org/files/ENCFF017FSY/@@download/ENCFF017FSY.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF233XAJ bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF239WGU, ENCFF836IMK, ENCFF942FFX 5448557 ENCODE Processing Pipeline e11f25c8c3f6dfba4dc21c10390ea330 https://www.encodeproject.org/files/ENCFF233XAJ/@@download/ENCFF233XAJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF974GOI bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF208AQB 9882927 ENCODE Processing Pipeline f19522ef6b4b1a73a82d59c752a60211 https://www.encodeproject.org/files/ENCFF974GOI/@@download/ENCFF974GOI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF930SEV bigWig signal p-value ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF632LZV 237919075 ENCODE Processing Pipeline 9ba594836b7f591ecef1afa258ac0af2 https://www.encodeproject.org/files/ENCFF930SEV/@@download/ENCFF930SEV.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF264RNQ bigWig signal p-value ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF309ANN, ENCFF632LZV 232254018 ENCODE Processing Pipeline c0635cb00608b385592a05468288a8d3 https://www.encodeproject.org/files/ENCFF264RNQ/@@download/ENCFF264RNQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF827QUC bigWig fold change over control ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF309ANN, ENCFF632LZV 390215236 ENCODE Processing Pipeline 1861a9181ac1e7420e493d2a80885d95 https://www.encodeproject.org/files/ENCFF827QUC/@@download/ENCFF827QUC.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF199SKV bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF309ANN, ENCFF632LZV 5455388 ENCODE Processing Pipeline 9c12aa3979b8f0bddc5305ce0e8450b8 https://www.encodeproject.org/files/ENCFF199SKV/@@download/ENCFF199SKV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF648HBS bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF859MQB 12542128 ENCODE Processing Pipeline 4f17b6b9900ea4bf49398333d315a544 https://www.encodeproject.org/files/ENCFF648HBS/@@download/ENCFF648HBS.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF069XXQ bigWig signal p-value ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF309ANN 234113092 ENCODE Processing Pipeline d5444574b5c776d84de0a8b60407743a https://www.encodeproject.org/files/ENCFF069XXQ/@@download/ENCFF069XXQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF251ACY bam unfiltered alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YLA, ENCFF807MUK 811233721 ENCODE Processing Pipeline ec92f9f5217e06f6c8d60006d9923fc7 https://www.encodeproject.org/files/ENCFF251ACY/@@download/ENCFF251ACY.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF223UHF bam unfiltered alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YKZ, ENCFF807MUK 1046105927 ENCODE Processing Pipeline 8d6e52cd4e38441e0fa855c4924357c8 https://www.encodeproject.org/files/ENCFF223UHF/@@download/ENCFF223UHF.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF309ANN bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YKZ, ENCFF807MUK 542388301 ENCODE Processing Pipeline 6b6a99af44f700dffa9085cc1232a151 https://www.encodeproject.org/files/ENCFF309ANN/@@download/ENCFF309ANN.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF632LZV bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YLA, ENCFF807MUK 503661324 ENCODE Processing Pipeline a21b60f339ac2430f9cc5088fe62938f https://www.encodeproject.org/files/ENCFF632LZV/@@download/ENCFF632LZV.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF453EDH bigWig fold change over control ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF632LZV 234148742 ENCODE Processing Pipeline ea437ebfcd7dcc7f72e346796d7154d9 https://www.encodeproject.org/files/ENCFF453EDH/@@download/ENCFF453EDH.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF859MQB bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF632LZV 5152875 ENCODE Processing Pipeline 71baec99e51af3ddd25dbb5560627e68 https://www.encodeproject.org/files/ENCFF859MQB/@@download/ENCFF859MQB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF993DUY bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF199SKV 12949016 ENCODE Processing Pipeline e34e3378a1de15df05f159180ad01d99 https://www.encodeproject.org/files/ENCFF993DUY/@@download/ENCFF993DUY.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF884VNW bed narrowPeak conservative idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF199SKV, ENCFF357NBU, ENCFF859MQB 476665 ENCODE Processing Pipeline e800acc223086c11337a341f66ad6dc5 https://www.encodeproject.org/files/ENCFF884VNW/@@download/ENCFF884VNW.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF362LBZ bigWig fold change over control ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF309ANN 207384084 ENCODE Processing Pipeline 59a38cc8d2cd29c50296902c2593b12b https://www.encodeproject.org/files/ENCFF362LBZ/@@download/ENCFF362LBZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF381YCY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF884VNW 935390 ENCODE Processing Pipeline dff05483be6b29d1acf61c3e88975b6b https://www.encodeproject.org/files/ENCFF381YCY/@@download/ENCFF381YCY.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF033RRL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF676YJE 1174532 ENCODE Processing Pipeline c7ebdb9298cf01f1f06adb42c3a71cb7 https://www.encodeproject.org/files/ENCFF033RRL/@@download/ENCFF033RRL.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF357NBU bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF309ANN 4223795 ENCODE Processing Pipeline 69a2a9af103dd227176648e42edaee29 https://www.encodeproject.org/files/ENCFF357NBU/@@download/ENCFF357NBU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF676YJE bed narrowPeak optimal idr thresholded peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF199SKV, ENCFF357NBU, ENCFF859MQB 636144 ENCODE Processing Pipeline ffdaabb82feb7296592767b1c23b26fa https://www.encodeproject.org/files/ENCFF676YJE/@@download/ENCFF676YJE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF141KWE bigBed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF357NBU 9897713 ENCODE Processing Pipeline e776752bb058a5d16cfecfe21732fd81 https://www.encodeproject.org/files/ENCFF141KWE/@@download/ENCFF141KWE.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDR bam alignments ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QED 875197294 Richard Myers, HAIB ef21b521e42c859e84ff447bb3f84eb5 https://www.encodeproject.org/files/ENCFF000QDR/@@download/ENCFF000QDR.bam hg19 released low read length biological replicates with identical biosample ENCFF000QDS bigBed broadPeak peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKV 1305127 Richard Myers, HAIB 0b3de43e71d56fd3cfe0336fd06f0fcb https://www.encodeproject.org/files/ENCFF000QDS/@@download/ENCFF000QDS.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000QDT bigBed broadPeak peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKW 678394 Richard Myers, HAIB 73fb864e41db742788412a111af0b32c https://www.encodeproject.org/files/ENCFF000QDT/@@download/ENCFF000QDT.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000QDU bam alignments ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QEG 785644626 Richard Myers, HAIB 80761bac7821da91c5c03caeed9fb513 https://www.encodeproject.org/files/ENCFF000QDU/@@download/ENCFF000QDU.bam hg19 released low read length biological replicates with identical biosample ENCFF000QDV bigWig raw signal ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 35169127 Richard Myers, HAIB a4cecbbe658dba5f3bec5e863e18ef35 https://www.encodeproject.org/files/ENCFF000QDV/@@download/ENCFF000QDV.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000QDW bigWig raw signal ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 18656037 Richard Myers, HAIB e6ad1bf4336097dbf8d2df48a7499da3 https://www.encodeproject.org/files/ENCFF000QDW/@@download/ENCFF000QDW.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000QED fastq reads ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1075409875 Richard Myers, HAIB 61b026659456a9b82e06be8ceb65260d https://www.encodeproject.org/files/ENCFF000QED/@@download/ENCFF000QED.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFS/ released low read length, inconsistent control read length biological replicates with identical biosample, mismatched status ENCFF000QEG fastq reads ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 941200568 Richard Myers, HAIB 89a2afb6f28496547735c59db0a0999d https://www.encodeproject.org/files/ENCFF000QEG/@@download/ENCFF000QEG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFL/ released low read length biological replicates with identical biosample ENCFF001UKV bed broadPeak peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 790097 Richard Myers, HAIB 43594cd9473d6b3fdf24716a7218233d https://www.encodeproject.org/files/ENCFF001UKV/@@download/ENCFF001UKV.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001UKW bed broadPeak peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 369502 Richard Myers, HAIB b5883a071bb3179666ea345d29afd42e https://www.encodeproject.org/files/ENCFF001UKW/@@download/ENCFF001UKW.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CMJ bed narrowPeak optimal idr thresholded peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 551112 ENCODE Consortium Analysis Working Group e5deb59ab10ad4f9cf73e327a1094fd3 https://www.encodeproject.org/files/ENCFF002CMJ/@@download/ENCFF002CMJ.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF136TIM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMJ 1015620 ENCODE Consortium 9152ed1ef14717a10356edfe1b347623 https://www.encodeproject.org/files/ENCFF136TIM/@@download/ENCFF136TIM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF001HBJ bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBV 491616499 John Stamatoyannopoulos, UW 2b720afd4c5a4ec49a8969889e84cb39 https://www.encodeproject.org/files/ENCFF001HBJ/@@download/ENCFF001HBJ.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBL bigBed broadPeak hotspots ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XNF 4343469 John Stamatoyannopoulos, UW 2d388f8ce2d84bf51870ea586112d28a https://www.encodeproject.org/files/ENCFF001HBL/@@download/ENCFF001HBL.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBM bigBed broadPeak hotspots ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XNG 5254979 John Stamatoyannopoulos, UW fbcef35b50aefcacb8e75793e7d2c9f1 https://www.encodeproject.org/files/ENCFF001HBM/@@download/ENCFF001HBM.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBN bigBed broadPeak hotspots ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001XNH 3493063 John Stamatoyannopoulos, UW 23a7c5f56169daa961ff8c67cded50dc https://www.encodeproject.org/files/ENCFF001HBN/@@download/ENCFF001HBN.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBO bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XNI 1345083 John Stamatoyannopoulos, UW 9b2316e7115cb6a6b2d18d9df714cb07 https://www.encodeproject.org/files/ENCFF001HBO/@@download/ENCFF001HBO.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBP bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XNJ 1013162 John Stamatoyannopoulos, UW 380c18544b0e17dea1ddcd9ee330be45 https://www.encodeproject.org/files/ENCFF001HBP/@@download/ENCFF001HBP.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBQ bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCC 634304816 John Stamatoyannopoulos, UW 0463137ae17290911265b013e0c42ea3 https://www.encodeproject.org/files/ENCFF001HBQ/@@download/ENCFF001HBQ.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBR bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001XNK 1046623 John Stamatoyannopoulos, UW 23ac97023ec3057b81558cbf40288786 https://www.encodeproject.org/files/ENCFF001HBR/@@download/ENCFF001HBR.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBS bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HCB 696860763 John Stamatoyannopoulos, UW ea940ccfbeb0e3907d5bd422a9dfcc14 https://www.encodeproject.org/files/ENCFF001HBS/@@download/ENCFF001HBS.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBU bigWig raw signal ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBJ 100850377 John Stamatoyannopoulos, UW dd49fefe1a6289861d0bef9220cdc474 https://www.encodeproject.org/files/ENCFF001HBU/@@download/ENCFF001HBU.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBV fastq reads ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 583802726 John Stamatoyannopoulos, UW 5341c2b24282e3d8d9474c0d71c570bf https://www.encodeproject.org/files/ENCFF001HBV/@@download/ENCFF001HBV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HCM/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBW bigWig raw signal ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBQ 104267610 John Stamatoyannopoulos, UW 12aef3b397fb50aa673bb40d63bca94b https://www.encodeproject.org/files/ENCFF001HBW/@@download/ENCFF001HBW.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HBX bigWig raw signal ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HBS 116702858 John Stamatoyannopoulos, UW adf025deb1209b98e866d69a9791067c https://www.encodeproject.org/files/ENCFF001HBX/@@download/ENCFF001HBX.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCB fastq reads ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 1 36 single-ended 813962111 John Stamatoyannopoulos, UW 8c2999e0a047cd96031ade1b9011ddf7 https://www.encodeproject.org/files/ENCFF001HCB/@@download/ENCFF001HCB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HCM/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCC fastq reads ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 793504955 John Stamatoyannopoulos, UW 6aafa02cb7b6d8f772421cef28164144 https://www.encodeproject.org/files/ENCFF001HCC/@@download/ENCFF001HCC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HCM/ archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNF bed broadPeak hotspots ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBJ 2363871 John Stamatoyannopoulos, UW 5ae95eb1a9297ca4df75572c7e566328 https://www.encodeproject.org/files/ENCFF001XNF/@@download/ENCFF001XNF.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNG bed broadPeak hotspots ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBQ 2850965 John Stamatoyannopoulos, UW ac599e65ba388ef7466113efa74da225 https://www.encodeproject.org/files/ENCFF001XNG/@@download/ENCFF001XNG.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNH bed broadPeak hotspots ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HBS 2511916 John Stamatoyannopoulos, UW e3a8cdb71641b1a956b1ec4d50fc4a62 https://www.encodeproject.org/files/ENCFF001XNH/@@download/ENCFF001XNH.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNI bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBJ 778320 John Stamatoyannopoulos, UW 62948b776e85af1c9b09394e351a0684 https://www.encodeproject.org/files/ENCFF001XNI/@@download/ENCFF001XNI.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNJ bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBQ 713329 John Stamatoyannopoulos, UW 32960c49d1ed141e6c54f15414942bb9 https://www.encodeproject.org/files/ENCFF001XNJ/@@download/ENCFF001XNJ.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNK bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HBS 734046 John Stamatoyannopoulos, UW 37e5d4639c27ae8d8dbee42b1badda71 https://www.encodeproject.org/files/ENCFF001XNK/@@download/ENCFF001XNK.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF002DCG bed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF001HBJ, ENCFF001HBQ, ENCFF001HBS 953786 ENCODE Consortium Analysis Working Group 5540da952ea93db87192bf07e709c9bd https://www.encodeproject.org/files/ENCFF002DCG/@@download/ENCFF002DCG.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF197AXI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF002DCG 1970282 ENCODE Consortium a29af981e6d228190a2ff2c1ecad9760 https://www.encodeproject.org/files/ENCFF197AXI/@@download/ENCFF197AXI.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF495RLC bam unfiltered alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCC, ENCFF643CGH 876332471 ENCODE Processing Pipeline 17287924285ad496ad39d7add5410762 https://www.encodeproject.org/files/ENCFF495RLC/@@download/ENCFF495RLC.bam GRCh38 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF654OFY bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCC, ENCFF643CGH 410506000 ENCODE Processing Pipeline 19765a48049502a1963b24dc6f9c9035 https://www.encodeproject.org/files/ENCFF654OFY/@@download/ENCFF654OFY.bam GRCh38 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF225NQU bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCB, ENCFF643CGH 521793900 ENCODE Processing Pipeline 5ddecebb87400f89fc2fe6881c92befd https://www.encodeproject.org/files/ENCFF225NQU/@@download/ENCFF225NQU.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF440QVT bam unfiltered alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCB, ENCFF807MUK 913688594 ENCODE Processing Pipeline 11d893f37af3190adaf677a90e0da1bb https://www.encodeproject.org/files/ENCFF440QVT/@@download/ENCFF440QVT.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF462NVK bam unfiltered alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCB, ENCFF643CGH 916643265 ENCODE Processing Pipeline 741e2b82033c8cc1a0f7d743f800ec63 https://www.encodeproject.org/files/ENCFF462NVK/@@download/ENCFF462NVK.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF708GDU bam unfiltered alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCC, ENCFF807MUK 873966168 ENCODE Processing Pipeline 2fe2b121fc600e71c8023614b337c938 https://www.encodeproject.org/files/ENCFF708GDU/@@download/ENCFF708GDU.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF393YGF bam unfiltered alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBV, ENCFF807MUK 668379233 ENCODE Processing Pipeline a8a7748694d31e4332022bec8aa4c118 https://www.encodeproject.org/files/ENCFF393YGF/@@download/ENCFF393YGF.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF421ELO bam unfiltered alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBV, ENCFF643CGH 669759791 ENCODE Processing Pipeline dc8f5768bfaa76bc897b43841a1c4cce https://www.encodeproject.org/files/ENCFF421ELO/@@download/ENCFF421ELO.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF730ZVL bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBV, ENCFF643CGH 437675477 ENCODE Processing Pipeline 5c02a50ef3a630d971430c747de8e3eb https://www.encodeproject.org/files/ENCFF730ZVL/@@download/ENCFF730ZVL.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF424VHC bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCC, ENCFF807MUK 406729058 ENCODE Processing Pipeline 570ee8629bd0d33795f106f5c631082a https://www.encodeproject.org/files/ENCFF424VHC/@@download/ENCFF424VHC.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF418PTV bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBV, ENCFF807MUK 435417154 ENCODE Processing Pipeline e665f068ebcdcbf93d8628da3375b802 https://www.encodeproject.org/files/ENCFF418PTV/@@download/ENCFF418PTV.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF483LML bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCB, ENCFF807MUK 519415857 ENCODE Processing Pipeline e52ed3f19a325d3af6acdf3f16078737 https://www.encodeproject.org/files/ENCFF483LML/@@download/ENCFF483LML.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF426RDJ bigWig signal p-value ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF730ZVL 314477057 ENCODE Processing Pipeline 53f5ce263d85373dd358b10859929c1c https://www.encodeproject.org/files/ENCFF426RDJ/@@download/ENCFF426RDJ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF622XWM bigWig signal p-value ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF418PTV, ENCFF437XQZ 257105040 ENCODE Processing Pipeline 09834b31eb5bf793b5e35d99a8b67ff6 https://www.encodeproject.org/files/ENCFF622XWM/@@download/ENCFF622XWM.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF009NXT bigWig fold change over control ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF730ZVL 159940350 ENCODE Processing Pipeline 94a39ddd204d5f32af7c9c7428c4e1fe https://www.encodeproject.org/files/ENCFF009NXT/@@download/ENCFF009NXT.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF167LLE bigWig fold change over control ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF418PTV, ENCFF437XQZ 158710804 ENCODE Processing Pipeline 57cb3fa07f9f98a491a016dc40267422 https://www.encodeproject.org/files/ENCFF167LLE/@@download/ENCFF167LLE.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF727MJT bigWig signal p-value ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF225NQU 270701092 ENCODE Processing Pipeline 5a2b2dcbcd9feeeb3f22796f906dd041 https://www.encodeproject.org/files/ENCFF727MJT/@@download/ENCFF727MJT.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF310ZZK bigWig signal p-value ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF437XQZ, ENCFF483LML 333152748 ENCODE Processing Pipeline e60e8f5eded8528f29bdf261790a04b9 https://www.encodeproject.org/files/ENCFF310ZZK/@@download/ENCFF310ZZK.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF593YIG bigWig fold change over control ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF225NQU, ENCFF730ZVL 322051606 ENCODE Processing Pipeline 5f1ba1ec3688f861142f3d414a29cd40 https://www.encodeproject.org/files/ENCFF593YIG/@@download/ENCFF593YIG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF446TRJ bigWig fold change over control ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF418PTV, ENCFF437XQZ, ENCFF483LML 320339577 ENCODE Processing Pipeline 73743fa72171edf94a9328ba32683212 https://www.encodeproject.org/files/ENCFF446TRJ/@@download/ENCFF446TRJ.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF888AYQ bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF225NQU, ENCFF730ZVL 4572219 ENCODE Processing Pipeline d59e7c57290417a56d40393490e7118f https://www.encodeproject.org/files/ENCFF888AYQ/@@download/ENCFF888AYQ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF942QEQ bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF604CNN 10411619 ENCODE Processing Pipeline 80579a401ee93050278d9dfd796e5980 https://www.encodeproject.org/files/ENCFF942QEQ/@@download/ENCFF942QEQ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF385GEQ bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF888AYQ 10909986 ENCODE Processing Pipeline b0c294c1db31bab216f62412793c08d2 https://www.encodeproject.org/files/ENCFF385GEQ/@@download/ENCFF385GEQ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF413YTJ bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF858HDY 5864707 ENCODE Processing Pipeline b5e7d1d5d3b79dac97960cc302775ade https://www.encodeproject.org/files/ENCFF413YTJ/@@download/ENCFF413YTJ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF861LCH bed narrowPeak conservative idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF106MGM, ENCFF419RSJ, ENCFF604CNN, ENCFF888AYQ 767318 ENCODE Processing Pipeline 17c9dfe8e5fc2d3cf2640ee58ef36758 https://www.encodeproject.org/files/ENCFF861LCH/@@download/ENCFF861LCH.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF347XEI bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF672SJH 10308066 ENCODE Processing Pipeline 07ea1a93aa4150209f44b45f3517d410 https://www.encodeproject.org/files/ENCFF347XEI/@@download/ENCFF347XEI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF284ZAC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF861LCH 1345213 ENCODE Processing Pipeline 5b7fdf6267b0b759c7b51c770e869798 https://www.encodeproject.org/files/ENCFF284ZAC/@@download/ENCFF284ZAC.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF751IKT bed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF106MGM, ENCFF419RSJ, ENCFF604CNN, ENCFF888AYQ 783806 ENCODE Processing Pipeline 90b5637752b82d2e60a3e9511ff1b36c https://www.encodeproject.org/files/ENCFF751IKT/@@download/ENCFF751IKT.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF770ZFW bigWig signal p-value ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF225NQU, ENCFF730ZVL 306801869 ENCODE Processing Pipeline cdb662d20e1b0865ef12268bbca4a38c https://www.encodeproject.org/files/ENCFF770ZFW/@@download/ENCFF770ZFW.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF341IVJ bigWig fold change over control ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF437XQZ, ENCFF483LML 202396582 ENCODE Processing Pipeline 3a4b36c0609b29ee383484db9079605e https://www.encodeproject.org/files/ENCFF341IVJ/@@download/ENCFF341IVJ.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF106MGM bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF730ZVL 2996265 ENCODE Processing Pipeline ead7274ef388151296b5d38e26292677 https://www.encodeproject.org/files/ENCFF106MGM/@@download/ENCFF106MGM.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF604CNN bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF225NQU 4300685 ENCODE Processing Pipeline 88ea0d69dee364e611142556297594fc https://www.encodeproject.org/files/ENCFF604CNN/@@download/ENCFF604CNN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF672SJH bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF437XQZ, ENCFF483LML 4221864 ENCODE Processing Pipeline f4795b9a57695643706a4c9b40664cb8 https://www.encodeproject.org/files/ENCFF672SJH/@@download/ENCFF672SJH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF267DUF bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF418PTV, ENCFF437XQZ, ENCFF483LML 4445974 ENCODE Processing Pipeline 31537dbff1238032307a1c85d4587f0c https://www.encodeproject.org/files/ENCFF267DUF/@@download/ENCFF267DUF.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF971ITN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF751IKT 1366524 ENCODE Processing Pipeline b8f7588cddc4a41960d54583c9941428 https://www.encodeproject.org/files/ENCFF971ITN/@@download/ENCFF971ITN.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF865JBI bigWig signal p-value ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF418PTV, ENCFF437XQZ, ENCFF483LML 306773110 ENCODE Processing Pipeline af9571714ca470faa83b5d88e74e5802 https://www.encodeproject.org/files/ENCFF865JBI/@@download/ENCFF865JBI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF858HDY bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF418PTV, ENCFF437XQZ 2866804 ENCODE Processing Pipeline 1805a6e56d8ac8d00e55976f1a24100c https://www.encodeproject.org/files/ENCFF858HDY/@@download/ENCFF858HDY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF464YDK bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF267DUF 10747242 ENCODE Processing Pipeline 5b17946da45c2a0e8c11327c3b7ab9ae https://www.encodeproject.org/files/ENCFF464YDK/@@download/ENCFF464YDK.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF350BAX bigWig fold change over control ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF225NQU 204602103 ENCODE Processing Pipeline d6ce2a34490d2ad6e4f29c2b6895cf3b https://www.encodeproject.org/files/ENCFF350BAX/@@download/ENCFF350BAX.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF362CYM bigBed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF106MGM 6037917 ENCODE Processing Pipeline 5454ce79a4b1b4a80062f6b2bab50133 https://www.encodeproject.org/files/ENCFF362CYM/@@download/ENCFF362CYM.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF531KWH bed narrowPeak conservative idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF001TDO, ENCFF267DUF, ENCFF672SJH, ENCFF858HDY 723298 ENCODE Processing Pipeline d1ee67fcb2c53aecc91545284754dd11 https://www.encodeproject.org/files/ENCFF531KWH/@@download/ENCFF531KWH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF784SUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF531KWH 1282060 ENCODE Processing Pipeline acac383e938e47ed3c3af9cd749c3144 https://www.encodeproject.org/files/ENCFF784SUF/@@download/ENCFF784SUF.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF917FIM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF671RVI 1303681 ENCODE Processing Pipeline 4ab50dd5f01a81360bb02ab096e19cbd https://www.encodeproject.org/files/ENCFF917FIM/@@download/ENCFF917FIM.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF671RVI bed narrowPeak optimal idr thresholded peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 3 ENCFF001TDO, ENCFF267DUF, ENCFF672SJH, ENCFF858HDY 739999 ENCODE Processing Pipeline aaf3b50473d1552c9b4cf0b4678f1564 https://www.encodeproject.org/files/ENCFF671RVI/@@download/ENCFF671RVI.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF000RPW bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RQF 663724122 Vishwanath Iyer, UTA 2b67f0153f33ad1c3bf114d5f8d61fa9 https://www.encodeproject.org/files/ENCFF000RPW/@@download/ENCFF000RPW.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RPX bigWig base overlap signal ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1027425331 Vishwanath Iyer, UTA 0514a61ae9a5680a0efbf2181cf32fe9 https://www.encodeproject.org/files/ENCFF000RPX/@@download/ENCFF000RPX.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, missing control alignments ENCFF000RPY bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RQK 501807290 Vishwanath Iyer, UTA eb5338455d8a39ac2a2276b0bb3e7170 https://www.encodeproject.org/files/ENCFF000RPY/@@download/ENCFF000RPY.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RPZ bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001USL 1957164 Vishwanath Iyer, UTA c7208471caeded92c92a74195513b1c1 https://www.encodeproject.org/files/ENCFF000RPZ/@@download/ENCFF000RPZ.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RQC bigWig signal ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 4159112023 Vishwanath Iyer, UTA 1880210c47caeb57354e0fde0edaf029 https://www.encodeproject.org/files/ENCFF000RQC/@@download/ENCFF000RQC.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, missing control alignments ENCFF000RQF fastq reads ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 682963548 Vishwanath Iyer, UTA 83e29b5ac2df5280173b88659536655d https://www.encodeproject.org/files/ENCFF000RQF/@@download/ENCFF000RQF.fastq.gz Illumina Genome Analyzer /files/ENCFF000RQY/ released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RQK fastq reads ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 518699843 Vishwanath Iyer, UTA d3bea05397849b4e42f539a27abd0c28 https://www.encodeproject.org/files/ENCFF000RQK/@@download/ENCFF000RQK.fastq.gz Illumina Genome Analyzer /files/ENCFF000RQY/ released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF001USL bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1110961 Vishwanath Iyer, UTA f278cb91792ef81d2044e690f4f945fb https://www.encodeproject.org/files/ENCFF001USL/@@download/ENCFF001USL.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, missing control alignments ENCFF651CKC bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQK, ENCFF643CGH 385032379 ENCODE Processing Pipeline 8f751ad8b35b8f15afbe2fae0131e191 https://www.encodeproject.org/files/ENCFF651CKC/@@download/ENCFF651CKC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF890UFY bam unfiltered alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQK, ENCFF643CGH 613355747 ENCODE Processing Pipeline 72dd3dc3e7486ca91488bc12921889f4 https://www.encodeproject.org/files/ENCFF890UFY/@@download/ENCFF890UFY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF637EYF bam unfiltered alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQF, ENCFF643CGH 787816908 ENCODE Processing Pipeline 2921811cfd842a8f535b6d14f5995acd https://www.encodeproject.org/files/ENCFF637EYF/@@download/ENCFF637EYF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF271LZR bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQF, ENCFF643CGH 494230308 ENCODE Processing Pipeline defe8ed30ab76661213587a2ed4921a9 https://www.encodeproject.org/files/ENCFF271LZR/@@download/ENCFF271LZR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF442EQB bam unfiltered alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQK, ENCFF807MUK 611887294 ENCODE Processing Pipeline a7992d5aac95261f16b07a38ff5ef91e https://www.encodeproject.org/files/ENCFF442EQB/@@download/ENCFF442EQB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF979ICT bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQK, ENCFF807MUK 382613234 ENCODE Processing Pipeline de508f66a62ea3bd27a48f9ff4aca1aa https://www.encodeproject.org/files/ENCFF979ICT/@@download/ENCFF979ICT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF995JTN bigWig fold change over control ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF651CKC 84091031 ENCODE Processing Pipeline 1e1dadab77ac0bb46a10b41ea9ed2293 https://www.encodeproject.org/files/ENCFF995JTN/@@download/ENCFF995JTN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF553JDS bigWig fold change over control ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF271LZR, ENCFF651CKC 184420524 ENCODE Processing Pipeline c9828c430b57752044d868b0a170a708 https://www.encodeproject.org/files/ENCFF553JDS/@@download/ENCFF553JDS.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF971YFR bigWig signal p-value ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF271LZR, ENCFF651CKC 59781551 ENCODE Processing Pipeline 73fc0e65181c74e6f4d20de0c4077a0c https://www.encodeproject.org/files/ENCFF971YFR/@@download/ENCFF971YFR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF726DUH bam unfiltered alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQF, ENCFF807MUK 786169200 ENCODE Processing Pipeline 403bf56993906029b53b435fa0d5f73f https://www.encodeproject.org/files/ENCFF726DUH/@@download/ENCFF726DUH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF841TPD bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQF, ENCFF807MUK 491653228 ENCODE Processing Pipeline 5b345ebba07f3b2f85cb54815be7aa44 https://www.encodeproject.org/files/ENCFF841TPD/@@download/ENCFF841TPD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF034JES bigWig fold change over control ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF271LZR 107694848 ENCODE Processing Pipeline f24ddc95e5bd94e73feabb8647c194c0 https://www.encodeproject.org/files/ENCFF034JES/@@download/ENCFF034JES.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF139KWN bigWig signal p-value ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF271LZR 65697702 ENCODE Processing Pipeline 006f11b15dfa2d430a2c6a3131209842 https://www.encodeproject.org/files/ENCFF139KWN/@@download/ENCFF139KWN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF849XVN bigWig signal p-value ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF651CKC 64545988 ENCODE Processing Pipeline 8c0fbe43bd9d68e0ea636ef43f4071af https://www.encodeproject.org/files/ENCFF849XVN/@@download/ENCFF849XVN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF552IZR bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF271LZR 3358657 ENCODE Processing Pipeline ec3d87e007b02a3270ebf567a6ad1a3c https://www.encodeproject.org/files/ENCFF552IZR/@@download/ENCFF552IZR.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF339DYI bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF398UAW 6969632 ENCODE Processing Pipeline f1a0f40d934f1dbc98e529e8cab62ec7 https://www.encodeproject.org/files/ENCFF339DYI/@@download/ENCFF339DYI.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF518WLT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF601MPV 1020585 ENCODE Processing Pipeline 9ce414d9798d9116252a409c5e019011 https://www.encodeproject.org/files/ENCFF518WLT/@@download/ENCFF518WLT.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF116IHF bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF552IZR 5399110 ENCODE Processing Pipeline 245ccd7d74570b00dc3d1bd17c9bb864 https://www.encodeproject.org/files/ENCFF116IHF/@@download/ENCFF116IHF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF601MPV bed narrowPeak optimal idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF398UAW, ENCFF419RSJ, ENCFF471VBX, ENCFF552IZR 533031 ENCODE Processing Pipeline 8e23cdf9ffb2f77956cf23464f1d2c16 https://www.encodeproject.org/files/ENCFF601MPV/@@download/ENCFF601MPV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF863XNU bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF471VBX 4931766 ENCODE Processing Pipeline 7393dc968fe9317f5713b2c029d0de55 https://www.encodeproject.org/files/ENCFF863XNU/@@download/ENCFF863XNU.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF392PKQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF075DWD 639113 ENCODE Processing Pipeline 108b26017373159e636eb5e597b4d2f6 https://www.encodeproject.org/files/ENCFF392PKQ/@@download/ENCFF392PKQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF471VBX bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF651CKC 3101948 ENCODE Processing Pipeline 3c1bef153c0f4ae7b8dec5e4c90c3d94 https://www.encodeproject.org/files/ENCFF471VBX/@@download/ENCFF471VBX.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF398UAW bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF271LZR, ENCFF651CKC 3527121 ENCODE Processing Pipeline 204c4b3104da9c397e70f45700ca16ae https://www.encodeproject.org/files/ENCFF398UAW/@@download/ENCFF398UAW.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF075DWD bed narrowPeak conservative idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF398UAW, ENCFF419RSJ, ENCFF471VBX, ENCFF552IZR 395635 ENCODE Processing Pipeline 3b193a820b820af525c300392c1bb5a6 https://www.encodeproject.org/files/ENCFF075DWD/@@download/ENCFF075DWD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF275EMR bigWig signal p-value ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF248LUV, ENCFF841TPD 65434410 ENCODE Processing Pipeline aeb1f495c2d51c3244b1b926b1353d44 https://www.encodeproject.org/files/ENCFF275EMR/@@download/ENCFF275EMR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF436QBQ bigWig fold change over control ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF248LUV, ENCFF841TPD 106413943 ENCODE Processing Pipeline b90ae1de41aed31c37ba2061bedad490 https://www.encodeproject.org/files/ENCFF436QBQ/@@download/ENCFF436QBQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF555GZI bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF248LUV, ENCFF841TPD 3319531 ENCODE Processing Pipeline f88c303dbbe59fba376fdc23b7668774 https://www.encodeproject.org/files/ENCFF555GZI/@@download/ENCFF555GZI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF557LXS bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF690YKI 6925905 ENCODE Processing Pipeline 978762dbc8ccf1faf199906f45cbdaef https://www.encodeproject.org/files/ENCFF557LXS/@@download/ENCFF557LXS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF132UCG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF431PLW 624901 ENCODE Processing Pipeline b40d885af86b8c286d3a57a01ce75ffd https://www.encodeproject.org/files/ENCFF132UCG/@@download/ENCFF132UCG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF350PRH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF622GQO 1005124 ENCODE Processing Pipeline ea433034b975aaf8fcb99e2bfd9cfa60 https://www.encodeproject.org/files/ENCFF350PRH/@@download/ENCFF350PRH.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF690YKI bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248LUV, ENCFF841TPD, ENCFF979ICT 3496933 ENCODE Processing Pipeline db1b3896589cfb5e3f0c1addc0ce4971 https://www.encodeproject.org/files/ENCFF690YKI/@@download/ENCFF690YKI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF659RGY bigWig signal p-value ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248LUV, ENCFF841TPD, ENCFF979ICT 59427313 ENCODE Processing Pipeline 2890f5a9420ca11575fb935508b08263 https://www.encodeproject.org/files/ENCFF659RGY/@@download/ENCFF659RGY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF756RGK bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF248LUV, ENCFF979ICT 3069932 ENCODE Processing Pipeline 8e407e153852c3c8fea8751f0e4158c4 https://www.encodeproject.org/files/ENCFF756RGK/@@download/ENCFF756RGK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF316KDY bigWig fold change over control ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF248LUV, ENCFF841TPD, ENCFF979ICT 184816164 ENCODE Processing Pipeline 21182ddcc693774cfdcaa4a918f8bee0 https://www.encodeproject.org/files/ENCFF316KDY/@@download/ENCFF316KDY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF853OIM bigWig signal p-value ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF248LUV, ENCFF979ICT 63242158 ENCODE Processing Pipeline e34c1d602bbfac281d6bf3054ca16c3d https://www.encodeproject.org/files/ENCFF853OIM/@@download/ENCFF853OIM.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF934YQW bigWig fold change over control ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF248LUV, ENCFF979ICT 84846301 ENCODE Processing Pipeline cdfbede4bb2d7c85ddde90dfefdd6a06 https://www.encodeproject.org/files/ENCFF934YQW/@@download/ENCFF934YQW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF332AAX bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF555GZI 5346372 ENCODE Processing Pipeline 94b1bcec9c3f9069b9a15fa8dba0cf5b https://www.encodeproject.org/files/ENCFF332AAX/@@download/ENCFF332AAX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF004HRS bigBed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF756RGK 4876537 ENCODE Processing Pipeline 35fe02903f38712b216fb827d5e022dc https://www.encodeproject.org/files/ENCFF004HRS/@@download/ENCFF004HRS.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF431PLW bed narrowPeak conservative idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF555GZI, ENCFF690YKI, ENCFF756RGK 382110 ENCODE Processing Pipeline a6317e62909d93253b4845304bcc8aba https://www.encodeproject.org/files/ENCFF431PLW/@@download/ENCFF431PLW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF622GQO bed narrowPeak optimal idr thresholded peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF555GZI, ENCFF690YKI, ENCFF756RGK 519232 ENCODE Processing Pipeline 06def2b40abe0c2c60f7a804865ba3f7 https://www.encodeproject.org/files/ENCFF622GQO/@@download/ENCFF622GQO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000WAS bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 1 392323523 Michael Snyder, Stanford af55699051245edf18a0e061146dcd07 https://www.encodeproject.org/files/ENCFF000WAS/@@download/ENCFF000WAS.bam hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WAT bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 1 420818817 Michael Snyder, Stanford 5f42bbac44759c96755de774cc12af47 https://www.encodeproject.org/files/ENCFF000WAT/@@download/ENCFF000WAT.bam hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WAU bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEY 2440992 Michael Snyder, Stanford 4ea24bb7853a79a8518337722aa7ebba https://www.encodeproject.org/files/ENCFF000WAU/@@download/ENCFF000WAU.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WAV fastq reads ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 693626229 Michael Snyder, Stanford 710e333efec6b7cd08e5f13407f25baa https://www.encodeproject.org/files/ENCFF000WAV/@@download/ENCFF000WAV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WAX fastq reads ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 737040426 Michael Snyder, Stanford a0892f076ce71d1e9aac6da2b38c3ea8 https://www.encodeproject.org/files/ENCFF000WAX/@@download/ENCFF000WAX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WBA bigWig signal ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 316089033 Michael Snyder, Stanford 99d776eadfe37b45719d76a84c3b6c12 https://www.encodeproject.org/files/ENCFF000WBA/@@download/ENCFF000WBA.bigWig hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF001VEY bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 943968 Michael Snyder, Stanford b47d8a6898a2ae6b6a627b61d201b056 https://www.encodeproject.org/files/ENCFF001VEY/@@download/ENCFF001VEY.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF002CPF bed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 152762 ENCODE Consortium Analysis Working Group 9cc0e437af92a42a1da3184eaddbcf0a https://www.encodeproject.org/files/ENCFF002CPF/@@download/ENCFF002CPF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF739TLC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPF 416806 ENCODE Consortium 01e27bd5a408180e21abfae5c01fba71 https://www.encodeproject.org/files/ENCFF739TLC/@@download/ENCFF739TLC.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF241IKD bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF643CGH 767226539 ENCODE Processing Pipeline dc224fadcc65c6f2e090e5a66e2e8527 https://www.encodeproject.org/files/ENCFF241IKD/@@download/ENCFF241IKD.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF832UST bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF643CGH 506260300 ENCODE Processing Pipeline 9fc4c76466445f66609839c6a0ba861f https://www.encodeproject.org/files/ENCFF832UST/@@download/ENCFF832UST.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF084NIJ bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF643CGH 725258278 ENCODE Processing Pipeline 0c4146ed90b072ba3ca33f6a72038696 https://www.encodeproject.org/files/ENCFF084NIJ/@@download/ENCFF084NIJ.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF120MJN bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF643CGH 486600264 ENCODE Processing Pipeline f8a93b3a26bb0dd1fb9ace88406aa029 https://www.encodeproject.org/files/ENCFF120MJN/@@download/ENCFF120MJN.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF175QVH bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF807MUK 722780271 ENCODE Processing Pipeline eb0d9d56280e830a66867cfd5fe8e3fd https://www.encodeproject.org/files/ENCFF175QVH/@@download/ENCFF175QVH.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF331KEV bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF807MUK 486206675 ENCODE Processing Pipeline 6d88f2733ec306b82327096ade54102a https://www.encodeproject.org/files/ENCFF331KEV/@@download/ENCFF331KEV.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF947DUD bam unfiltered alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF807MUK 764568340 ENCODE Processing Pipeline 175ff7e709134a1782b1568072153ab9 https://www.encodeproject.org/files/ENCFF947DUD/@@download/ENCFF947DUD.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF977PDQ bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF807MUK 505632304 ENCODE Processing Pipeline 11564625327619206181c261a2e55811 https://www.encodeproject.org/files/ENCFF977PDQ/@@download/ENCFF977PDQ.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF430WLR bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 211238689 ENCODE Processing Pipeline 9a4e8db9db2c8e09b4053bab964732d8 https://www.encodeproject.org/files/ENCFF430WLR/@@download/ENCFF430WLR.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF054VPQ bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331KEV, ENCFF420MOQ, ENCFF977PDQ 191998232 ENCODE Processing Pipeline 0a3355a88a0f1001f56a0ebb12d75f22 https://www.encodeproject.org/files/ENCFF054VPQ/@@download/ENCFF054VPQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF527FBU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF462GHD 635591 ENCODE Processing Pipeline c44e6a8fdaeb0184a79a1a5fdfa29f2e https://www.encodeproject.org/files/ENCFF527FBU/@@download/ENCFF527FBU.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF325CVO bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 229204017 ENCODE Processing Pipeline 61a1d50b166e363ee9ca34b23b77f4c9 https://www.encodeproject.org/files/ENCFF325CVO/@@download/ENCFF325CVO.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF277LGX bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF832BPN 10009383 ENCODE Processing Pipeline 4ac26849f10fe8a040bea8b88fd05371 https://www.encodeproject.org/files/ENCFF277LGX/@@download/ENCFF277LGX.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF473XOV bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF632WHJ 10863862 ENCODE Processing Pipeline 1a2d3f9d6490c9a9a76b558b2f49230f https://www.encodeproject.org/files/ENCFF473XOV/@@download/ENCFF473XOV.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF902OLH bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 220317224 ENCODE Processing Pipeline 326ac12246cd1313492450b813779984 https://www.encodeproject.org/files/ENCFF902OLH/@@download/ENCFF902OLH.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF981IPY bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 4488501 ENCODE Processing Pipeline 068912a3f4e79bb4e1af6fe5b56c1127 https://www.encodeproject.org/files/ENCFF981IPY/@@download/ENCFF981IPY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF632WHJ bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331KEV, ENCFF420MOQ, ENCFF977PDQ 4948043 ENCODE Processing Pipeline 5451c95216a5ce055cb4f2f7ae3937d8 https://www.encodeproject.org/files/ENCFF632WHJ/@@download/ENCFF632WHJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF481NEK bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF981IPY 10131172 ENCODE Processing Pipeline d3617a8306c4582382bf5488af23f79b https://www.encodeproject.org/files/ENCFF481NEK/@@download/ENCFF481NEK.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF462GHD bed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF632WHJ, ENCFF832BPN, ENCFF981IPY 297848 ENCODE Processing Pipeline d24dbbf4eb07c49cf63b19d7a03b606a https://www.encodeproject.org/files/ENCFF462GHD/@@download/ENCFF462GHD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF585GAT bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 212163136 ENCODE Processing Pipeline 917e50ea0051a6e0ba04f04e704aa4d1 https://www.encodeproject.org/files/ENCFF585GAT/@@download/ENCFF585GAT.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF279XNH bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331KEV, ENCFF420MOQ, ENCFF977PDQ 407102192 ENCODE Processing Pipeline b4209bb565db369aa4933062c186a3aa https://www.encodeproject.org/files/ENCFF279XNH/@@download/ENCFF279XNH.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF832BPN bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 4241624 ENCODE Processing Pipeline f3455cfebc308f6dc6b360696db47636 https://www.encodeproject.org/files/ENCFF832BPN/@@download/ENCFF832BPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF620PNQ bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120MJN, ENCFF157YWH 217845093 ENCODE Processing Pipeline e63c5ca49948a98314fdfbc26020dcc3 https://www.encodeproject.org/files/ENCFF620PNQ/@@download/ENCFF620PNQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF030LQV bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120MJN, ENCFF157YWH 4500807 ENCODE Processing Pipeline 53c12c6bc40b9f8ce2c0e2835702844f https://www.encodeproject.org/files/ENCFF030LQV/@@download/ENCFF030LQV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF173DLD bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120MJN, ENCFF157YWH 211227037 ENCODE Processing Pipeline fbd72cd1167178e8f89a6f6489d5c60e https://www.encodeproject.org/files/ENCFF173DLD/@@download/ENCFF173DLD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF927DVL bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120MJN, ENCFF157YWH, ENCFF832UST 4955743 ENCODE Processing Pipeline 16f3ecd5c46a7fbb521d907e0772d968 https://www.encodeproject.org/files/ENCFF927DVL/@@download/ENCFF927DVL.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF199BGY bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF030LQV 10178333 ENCODE Processing Pipeline 0383bfc41140fae98e4ff40cca8a6011 https://www.encodeproject.org/files/ENCFF199BGY/@@download/ENCFF199BGY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF244ZHS bed narrowPeak conservative idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030LQV, ENCFF419RSJ, ENCFF927DVL, ENCFF996TEH 302332 ENCODE Processing Pipeline 4717e7b7ad78cae9b068072a010fabe2 https://www.encodeproject.org/files/ENCFF244ZHS/@@download/ENCFF244ZHS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF167VDA bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120MJN, ENCFF157YWH, ENCFF832UST 404974764 ENCODE Processing Pipeline 49a3fbd66b0c83b81c8a7c17927b7a8a https://www.encodeproject.org/files/ENCFF167VDA/@@download/ENCFF167VDA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF972JRU bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF996TEH 10012575 ENCODE Processing Pipeline b3eb0b0756da6985f725bb478d0abaf2 https://www.encodeproject.org/files/ENCFF972JRU/@@download/ENCFF972JRU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF080HJX bed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF030LQV, ENCFF419RSJ, ENCFF927DVL, ENCFF996TEH 366595 ENCODE Processing Pipeline dd99ff2eac862c56eddcba2b601d7efc https://www.encodeproject.org/files/ENCFF080HJX/@@download/ENCFF080HJX.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF538UBZ bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120MJN, ENCFF157YWH, ENCFF832UST 191973130 ENCODE Processing Pipeline a5407c99f04e65f5159d5953c68d1005 https://www.encodeproject.org/files/ENCFF538UBZ/@@download/ENCFF538UBZ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF996TEH bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF832UST 4262611 ENCODE Processing Pipeline bdd47898dcbf7b29bd3950d32d6d6fb5 https://www.encodeproject.org/files/ENCFF996TEH/@@download/ENCFF996TEH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF947QVB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF244ZHS 643994 ENCODE Processing Pipeline 178b2daa424a3bb2a8daae9f565bd74d https://www.encodeproject.org/files/ENCFF947QVB/@@download/ENCFF947QVB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF559ADQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF080HJX 752301 ENCODE Processing Pipeline 872020914521ee51a4e4d852b8d87a90 https://www.encodeproject.org/files/ENCFF559ADQ/@@download/ENCFF559ADQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF346XKS bigWig signal p-value ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF832UST 212176437 ENCODE Processing Pipeline 2c667c58bc6a3c1664465433e332591d https://www.encodeproject.org/files/ENCFF346XKS/@@download/ENCFF346XKS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF051OZL bigWig fold change over control ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF832UST 230571179 ENCODE Processing Pipeline 5d14ab8dc65222359d01b9179e9622f6 https://www.encodeproject.org/files/ENCFF051OZL/@@download/ENCFF051OZL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF633LPZ bigBed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF927DVL 10861921 ENCODE Processing Pipeline d462374026e69aee42727b8d53944c11 https://www.encodeproject.org/files/ENCFF633LPZ/@@download/ENCFF633LPZ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000YXJ bam alignments ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YXU 130816027 Michael Snyder, Stanford 74fb76b4cd38cdee35e54ba10bda3da3 https://www.encodeproject.org/files/ENCFF000YXJ/@@download/ENCFF000YXJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXK bam alignments ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXV 165257038 Michael Snyder, Stanford 79dcc36f6d98c66d0fe4d09370a33afa https://www.encodeproject.org/files/ENCFF000YXK/@@download/ENCFF000YXK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXL bigBed narrowPeak peaks ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOK 2294180 Michael Snyder, Stanford 5964f187f7470842b2eb62eafb48837a https://www.encodeproject.org/files/ENCFF000YXL/@@download/ENCFF000YXL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXM bigWig signal ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 145951771 Michael Snyder, Stanford 92b18c6fdad57668cdb1fb10fea45902 https://www.encodeproject.org/files/ENCFF000YXM/@@download/ENCFF000YXM.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YXU fastq reads ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 222102742 Michael Snyder, Stanford 8cbff4d3a3fc89013eefe31cfcdd2019 https://www.encodeproject.org/files/ENCFF000YXU/@@download/ENCFF000YXU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released biological replicates with identical biosample insufficient read length ENCFF000YXV fastq reads ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 266163059 Michael Snyder, Stanford ff686b6d19cb2abf6f508f95a0189ad3 https://www.encodeproject.org/files/ENCFF000YXV/@@download/ENCFF000YXV.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released biological replicates with identical biosample insufficient read length ENCFF001VOK bed narrowPeak peaks ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1227266 Michael Snyder, Stanford 3dce75d663db7e3d0db775c02bba0fd2 https://www.encodeproject.org/files/ENCFF001VOK/@@download/ENCFF001VOK.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002DDU bed narrowPeak optimal idr thresholded peaks ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 44670 ENCODE Consortium Analysis Working Group b080f173f628f221e5b9d573a1a10fe3 https://www.encodeproject.org/files/ENCFF002DDU/@@download/ENCFF002DDU.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF268RRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002DDU 170907 ENCODE Consortium 843a52b6210c62b21007a56bc77b6b10 https://www.encodeproject.org/files/ENCFF268RRD/@@download/ENCFF268RRD.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000MXE bam alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MXO 638055354 Richard Myers, HAIB bc048bfccc4f0ddf138b6e1e0be36765 https://www.encodeproject.org/files/ENCFF000MXE/@@download/ENCFF000MXE.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF000MXF bigWig raw signal ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 1 7161080 Richard Myers, HAIB 18d4e02bc69c4c07ff96d4c0eab0653e https://www.encodeproject.org/files/ENCFF000MXF/@@download/ENCFF000MXF.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing derived_from ENCFF000MXO fastq reads ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 571843778 Richard Myers, HAIB 154ebdf789091925c83e4a0b18fd218b https://www.encodeproject.org/files/ENCFF000MXO/@@download/ENCFF000MXO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NFR/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF891DUU bam alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXO, ENCFF807MUK 357718096 ENCODE Processing Pipeline e4cde4a186a24a728810a286168d440e https://www.encodeproject.org/files/ENCFF891DUU/@@download/ENCFF891DUU.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF741ODT bam unfiltered alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXO, ENCFF643CGH 753042313 ENCODE Processing Pipeline 239fd87dfe289b906d1cc24b8d1437d0 https://www.encodeproject.org/files/ENCFF741ODT/@@download/ENCFF741ODT.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF782JSW bam unfiltered alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXO, ENCFF807MUK 750433205 ENCODE Processing Pipeline 8400c27ac0e9e207d88b18cc63bcfe36 https://www.encodeproject.org/files/ENCFF782JSW/@@download/ENCFF782JSW.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF056OHH bam alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXO, ENCFF643CGH 357614968 ENCODE Processing Pipeline 8b6619c3d8276d4ed972c877de848362 https://www.encodeproject.org/files/ENCFF056OHH/@@download/ENCFF056OHH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF565QFG bed narrowPeak peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF692IRB, ENCFF891DUU 3586932 ENCODE Processing Pipeline 41358c3f0008d638324617e527486188 https://www.encodeproject.org/files/ENCFF565QFG/@@download/ENCFF565QFG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF576PUH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF419RSJ, ENCFF535HFM 52880 ENCODE Processing Pipeline bf3ee74b789d36125e1e32933b8e0db7 https://www.encodeproject.org/files/ENCFF576PUH/@@download/ENCFF576PUH.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF639NAX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF576PUH 128476 ENCODE Processing Pipeline ba91079f3fec382cab1ae8448cff5fb2 https://www.encodeproject.org/files/ENCFF639NAX/@@download/ENCFF639NAX.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF311UFN bigWig fold change over control ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF692IRB, ENCFF891DUU 198056441 ENCODE Processing Pipeline 04d9dec090970ae81116af2f6c0b6ec2 https://www.encodeproject.org/files/ENCFF311UFN/@@download/ENCFF311UFN.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF926GCZ bigBed narrowPeak peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF565QFG 7603048 ENCODE Processing Pipeline 7026b133cb0a626c007fecad2e5572fc https://www.encodeproject.org/files/ENCFF926GCZ/@@download/ENCFF926GCZ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF913LCH bigWig signal p-value ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF056OHH, ENCFF353UFN 258377889 ENCODE Processing Pipeline 704b22aa036f75160595ce32697a42aa https://www.encodeproject.org/files/ENCFF913LCH/@@download/ENCFF913LCH.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF157FKC bigWig fold change over control ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF056OHH, ENCFF353UFN 200691817 ENCODE Processing Pipeline 4d26bbefe106ca323844354afd4ab289 https://www.encodeproject.org/files/ENCFF157FKC/@@download/ENCFF157FKC.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF535HFM bed narrowPeak peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF056OHH, ENCFF353UFN 3584619 ENCODE Processing Pipeline bf4de1046cf61a78bde3ed24b0a517a0 https://www.encodeproject.org/files/ENCFF535HFM/@@download/ENCFF535HFM.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF236FJC bigBed narrowPeak peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF535HFM 7631395 ENCODE Processing Pipeline f0aebbeac48bd1b4ffd095db750145f0 https://www.encodeproject.org/files/ENCFF236FJC/@@download/ENCFF236FJC.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF345HWI bigWig signal p-value ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF692IRB, ENCFF891DUU 278000786 ENCODE Processing Pipeline db36e6fa75349a383b9bc277217add89 https://www.encodeproject.org/files/ENCFF345HWI/@@download/ENCFF345HWI.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF716FAV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001TDO, ENCFF565QFG 51218 ENCODE Processing Pipeline c92dca95e55185d288d122c972f3dea9 https://www.encodeproject.org/files/ENCFF716FAV/@@download/ENCFF716FAV.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF694QZV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF716FAV 126082 ENCODE Processing Pipeline 84ef6f2edb22f1cb2b08d941bdf61592 https://www.encodeproject.org/files/ENCFF694QZV/@@download/ENCFF694QZV.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF000BVD bigBed broadPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SYW 1085024 Bradley Bernstein, Broad dfc64e220c106c953bcac8f12a6ad95f https://www.encodeproject.org/files/ENCFF000BVD/@@download/ENCFF000BVD.bigBed hg19 archived control low read depth, low read length, inconsistent platforms ENCFF000BVE bigWig signal ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 454769864 Bradley Bernstein, Broad 09712edcc6763ba2548ff9027455894b https://www.encodeproject.org/files/ENCFF000BVE/@@download/ENCFF000BVE.bigWig hg19 archived control low read depth, low read length, inconsistent platforms missing derived_from ENCFF000BVF bam alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000BVP 1423387544 Bradley Bernstein, Broad 0e7c7c89396980b631e97dc9b600868e https://www.encodeproject.org/files/ENCFF000BVF/@@download/ENCFF000BVF.bam hg19 archived control low read depth, low read length, inconsistent platforms ENCFF000BVP fastq reads ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1552343612 Bradley Bernstein, Broad 4a46e7f60690af6788ed1db5b8f6cbb8 https://www.encodeproject.org/files/ENCFF000BVP/@@download/ENCFF000BVP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, inconsistent platforms ENCFF001SYW bed broadPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 614924 Bradley Bernstein, Broad 334bfb72b3e91de1d8966cfe7487839d https://www.encodeproject.org/files/ENCFF001SYW/@@download/ENCFF001SYW.bed.gz hg19 archived control low read depth, low read length, inconsistent platforms missing derived_from ENCFF047TCZ bam unfiltered alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVP, ENCFF807MUK 2019164211 ENCODE Processing Pipeline ef7535ee713a40b920de070d1a628d4a https://www.encodeproject.org/files/ENCFF047TCZ/@@download/ENCFF047TCZ.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF614QMP bam alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVP, ENCFF807MUK 1123399603 ENCODE Processing Pipeline c8d1f49f715cbb6d3b1a1b01669a3393 https://www.encodeproject.org/files/ENCFF614QMP/@@download/ENCFF614QMP.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF074DXA bam unfiltered alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVP, ENCFF643CGH 2037600807 ENCODE Processing Pipeline 5071689e69c9773d068a2c4558d77e05 https://www.encodeproject.org/files/ENCFF074DXA/@@download/ENCFF074DXA.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF822UJU bam alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVP, ENCFF643CGH 1123168788 ENCODE Processing Pipeline f840b1baa32995d99bee414d95e5d253 https://www.encodeproject.org/files/ENCFF822UJU/@@download/ENCFF822UJU.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF952ESR bigWig fold change over control ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF822UJU 410681348 ENCODE Processing Pipeline 966fd5d00397cbc373e5d6e1a7ff2185 https://www.encodeproject.org/files/ENCFF952ESR/@@download/ENCFF952ESR.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF384UNM bigBed narrowPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF944XCG 10939287 ENCODE Processing Pipeline 26b65de17edc81594bedb7f6fc49940c https://www.encodeproject.org/files/ENCFF384UNM/@@download/ENCFF384UNM.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF243GHK bigWig signal p-value ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF614QMP 363066948 ENCODE Processing Pipeline 81a544caa78af132d5af53e32f0e8309 https://www.encodeproject.org/files/ENCFF243GHK/@@download/ENCFF243GHK.bigWig hg19 released control low read depth, low read length, inconsistent platforms ENCFF358INE bigWig fold change over control ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF614QMP 411482497 ENCODE Processing Pipeline 64f8e2bf7d77ab4c0519a7c626fb7bda https://www.encodeproject.org/files/ENCFF358INE/@@download/ENCFF358INE.bigWig hg19 released control low read depth, low read length, inconsistent platforms ENCFF447BDZ bigBed narrowPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF397GWD 10935676 ENCODE Processing Pipeline 6c278757c8922e3dddd631cde649d173 https://www.encodeproject.org/files/ENCFF447BDZ/@@download/ENCFF447BDZ.bigBed hg19 released control low read depth, low read length, inconsistent platforms ENCFF956TND bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF005BKP 106900 ENCODE Processing Pipeline 532488e34eebba09b35e766ed0157e3f https://www.encodeproject.org/files/ENCFF956TND/@@download/ENCFF956TND.bigBed hg19 released control low read depth, low read length, inconsistent platforms ENCFF397GWD bed narrowPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF614QMP 4495477 ENCODE Processing Pipeline e8e09d5d180d98eb388d73ab00363db8 https://www.encodeproject.org/files/ENCFF397GWD/@@download/ENCFF397GWD.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF005BKP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF397GWD 21114 ENCODE Processing Pipeline 6a23d25330cdaca62d2a1a30cc22ce97 https://www.encodeproject.org/files/ENCFF005BKP/@@download/ENCFF005BKP.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF944XCG bed narrowPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF822UJU 4450989 ENCODE Processing Pipeline 859e4ae8a6825885dfcabce89f47956a https://www.encodeproject.org/files/ENCFF944XCG/@@download/ENCFF944XCG.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF378YKS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF944XCG 21280 ENCODE Processing Pipeline 6eea803e644af5d23ecc1feaf1ee3488 https://www.encodeproject.org/files/ENCFF378YKS/@@download/ENCFF378YKS.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF217KSM bigWig signal p-value ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF822UJU 362835966 ENCODE Processing Pipeline b781d8d908c9956307431070779d3148 https://www.encodeproject.org/files/ENCFF217KSM/@@download/ENCFF217KSM.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF097KWJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF378YKS 110073 ENCODE Processing Pipeline 194f178c19b06d171a0a3a6a846b9ed7 https://www.encodeproject.org/files/ENCFF097KWJ/@@download/ENCFF097KWJ.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF345SRH fastq reads ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 1797300253 Xiang-Dong Fu, UCSD d56696c96b86f270f971e4def07e43bc https://www.encodeproject.org/files/ENCFF345SRH/@@download/ENCFF345SRH.fastq.gz Illumina HiSeq 2500 /files/ENCFF089EYX/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF218JDY fastq reads ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 1969891716 Xiang-Dong Fu, UCSD 4235c8249200d9b97a96e0ad2f4df78a https://www.encodeproject.org/files/ENCFF218JDY/@@download/ENCFF218JDY.fastq.gz Illumina HiSeq 2500 /files/ENCFF419XJY/ released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF201JRP bam unfiltered alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF345SRH, ENCFF643CGH 2120097104 ENCODE Processing Pipeline 947fa1e69138a6980c48f100585c2756 https://www.encodeproject.org/files/ENCFF201JRP/@@download/ENCFF201JRP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF994GKJ bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF345SRH, ENCFF643CGH 725130559 ENCODE Processing Pipeline eff8c8a18ad446560b3d437847852a89 https://www.encodeproject.org/files/ENCFF994GKJ/@@download/ENCFF994GKJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF768SVS bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF345SRH, ENCFF807MUK 726011145 ENCODE Processing Pipeline c94e4789b3ef262f66f0e77b3c2b6ee7 https://www.encodeproject.org/files/ENCFF768SVS/@@download/ENCFF768SVS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF820XPW bam unfiltered alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF345SRH, ENCFF807MUK 2109342775 ENCODE Processing Pipeline 1c52261caee59571dc70e331771d3cb5 https://www.encodeproject.org/files/ENCFF820XPW/@@download/ENCFF820XPW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF247AFE bam unfiltered alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF218JDY, ENCFF807MUK 2171003149 ENCODE Processing Pipeline ae99ab4c79cd97bc0a3b59dc2eb32b30 https://www.encodeproject.org/files/ENCFF247AFE/@@download/ENCFF247AFE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF813JWE bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF218JDY, ENCFF807MUK 541808386 ENCODE Processing Pipeline 8fd2cd7abb23355537c1be2a01bd212b https://www.encodeproject.org/files/ENCFF813JWE/@@download/ENCFF813JWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF424HUP bam unfiltered alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF218JDY, ENCFF643CGH 2182585936 ENCODE Processing Pipeline 576a0f58bb636e8597305ea35be28b30 https://www.encodeproject.org/files/ENCFF424HUP/@@download/ENCFF424HUP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF909BWR bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF218JDY, ENCFF643CGH 541016935 ENCODE Processing Pipeline ebb1189a00352b0c6c8a4128b03aa7f5 https://www.encodeproject.org/files/ENCFF909BWR/@@download/ENCFF909BWR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF343WVR bigWig signal p-value ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF456BYT, ENCFF768SVS 553554309 ENCODE Processing Pipeline b1e8ab237cc163018ec7534b3a7ed1ab https://www.encodeproject.org/files/ENCFF343WVR/@@download/ENCFF343WVR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF250BGK bigWig fold change over control ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF456BYT, ENCFF768SVS 493825867 ENCODE Processing Pipeline 678b6bf1ddb2baa4f7f52b30d53e1931 https://www.encodeproject.org/files/ENCFF250BGK/@@download/ENCFF250BGK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF013TMO bigWig signal p-value ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF321CYT, ENCFF813JWE 507995060 ENCODE Processing Pipeline 869435bb3c19a748e3dfa982d120f27f https://www.encodeproject.org/files/ENCFF013TMO/@@download/ENCFF013TMO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF553QWJ bigWig signal p-value ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF768SVS, ENCFF813JWE 1003623559 ENCODE Processing Pipeline e74fb144b3747403b447d1a2c0ed7f39 https://www.encodeproject.org/files/ENCFF553QWJ/@@download/ENCFF553QWJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF987VPA bigWig fold change over control ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF321CYT, ENCFF813JWE 407644213 ENCODE Processing Pipeline b1c9c0e9554a4c10159939d2a1d54b0a https://www.encodeproject.org/files/ENCFF987VPA/@@download/ENCFF987VPA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF973NPC bigWig fold change over control ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF768SVS, ENCFF813JWE 1011935722 ENCODE Processing Pipeline 55eea1c90cbeeb6047a6cded8004f4d5 https://www.encodeproject.org/files/ENCFF973NPC/@@download/ENCFF973NPC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF433KJT bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF456BYT, ENCFF768SVS 6278109 ENCODE Processing Pipeline 8949bddbdc88054247ad6b4ee81e1e64 https://www.encodeproject.org/files/ENCFF433KJT/@@download/ENCFF433KJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456UCJ bigBed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF657LPF 13050032 ENCODE Processing Pipeline f7a0beb170bbfbb99d94d06e174b9aee https://www.encodeproject.org/files/ENCFF456UCJ/@@download/ENCFF456UCJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF236YAX bigBed narrowPeak conservative idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF069FZQ 583999 ENCODE Processing Pipeline 042ec71d01615e7a24d6ffc28e13a106 https://www.encodeproject.org/files/ENCFF236YAX/@@download/ENCFF236YAX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF343RFS bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF768SVS, ENCFF813JWE 7138041 ENCODE Processing Pipeline f89a0bb73afe906b16e3e34f10d11a16 https://www.encodeproject.org/files/ENCFF343RFS/@@download/ENCFF343RFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF069FZQ bed narrowPeak conservative idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF343RFS, ENCFF433KJT, ENCFF657LPF 254351 ENCODE Processing Pipeline 66447ac005b80da088e421b4642fb716 https://www.encodeproject.org/files/ENCFF069FZQ/@@download/ENCFF069FZQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF657LPF bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF321CYT, ENCFF813JWE 6083473 ENCODE Processing Pipeline bce63864da546534586631a4ae6e039a https://www.encodeproject.org/files/ENCFF657LPF/@@download/ENCFF657LPF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF431UER bigBed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF433KJT 13070368 ENCODE Processing Pipeline 92f67c174f5a3ce6b375c5f05dadea3f https://www.encodeproject.org/files/ENCFF431UER/@@download/ENCFF431UER.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF156DEC bigBed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF343RFS 12972437 ENCODE Processing Pipeline 585d81adbc78d8edf94d97c80feb60d4 https://www.encodeproject.org/files/ENCFF156DEC/@@download/ENCFF156DEC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF122QSN bed narrowPeak optimal idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF343RFS, ENCFF433KJT, ENCFF657LPF 273665 ENCODE Processing Pipeline 45e71ff27266791196cebd444eafddf2 https://www.encodeproject.org/files/ENCFF122QSN/@@download/ENCFF122QSN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF039WOE bigBed narrowPeak optimal idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF122QSN 614329 ENCODE Processing Pipeline 1b27e0822dfe58c3bb2e26f48189ac3f https://www.encodeproject.org/files/ENCFF039WOE/@@download/ENCFF039WOE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF562PTA bigWig signal p-value ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF661ZRO, ENCFF994GKJ 576809157 ENCODE Processing Pipeline 8084a6ae12853f6667ad07197f3f156b https://www.encodeproject.org/files/ENCFF562PTA/@@download/ENCFF562PTA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF266ZJD bigWig signal p-value ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF872FDX, ENCFF909BWR 533388514 ENCODE Processing Pipeline 53c0d67a4d0e757214f372fdf27b029a https://www.encodeproject.org/files/ENCFF266ZJD/@@download/ENCFF266ZJD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF886ZRM bigWig fold change over control ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF661ZRO, ENCFF994GKJ 493210990 ENCODE Processing Pipeline 2ae18858abcf849865d4e5adb820e961 https://www.encodeproject.org/files/ENCFF886ZRM/@@download/ENCFF886ZRM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF694KEE bigWig signal p-value ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661ZRO, ENCFF872FDX, ENCFF909BWR, ENCFF994GKJ 1081201270 ENCODE Processing Pipeline a68f6340f288717f25b663bded2c5842 https://www.encodeproject.org/files/ENCFF694KEE/@@download/ENCFF694KEE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF105DAM bigWig fold change over control ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF872FDX, ENCFF909BWR 413582349 ENCODE Processing Pipeline 90bb2c9c478a6af85b1a2e9caf829db4 https://www.encodeproject.org/files/ENCFF105DAM/@@download/ENCFF105DAM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF779GAL bigWig fold change over control ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661ZRO, ENCFF872FDX, ENCFF909BWR, ENCFF994GKJ 1024352164 ENCODE Processing Pipeline b04480121797181a8f53f3c84fad9b54 https://www.encodeproject.org/files/ENCFF779GAL/@@download/ENCFF779GAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF479DMK bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF661ZRO, ENCFF994GKJ 6285227 ENCODE Processing Pipeline 5f3a941ed3014e4ec45c978acdac785e https://www.encodeproject.org/files/ENCFF479DMK/@@download/ENCFF479DMK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF087YUB bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF872FDX, ENCFF909BWR 6133964 ENCODE Processing Pipeline 8939029ef4e91c34edafb404f4f0a383 https://www.encodeproject.org/files/ENCFF087YUB/@@download/ENCFF087YUB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF755UFL bigBed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF087YUB 13059308 ENCODE Processing Pipeline c0f638dc5e3d4caebc12dad92f3330f8 https://www.encodeproject.org/files/ENCFF755UFL/@@download/ENCFF755UFL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF391GBE bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661ZRO, ENCFF872FDX, ENCFF909BWR, ENCFF994GKJ 7151787 ENCODE Processing Pipeline 2d2784b38934ec15adf49ea86c8e7358 https://www.encodeproject.org/files/ENCFF391GBE/@@download/ENCFF391GBE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF481EBR bigBed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF479DMK 13090478 ENCODE Processing Pipeline 3259463ec78614a7d163ddde92f7926e https://www.encodeproject.org/files/ENCFF481EBR/@@download/ENCFF481EBR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF306RJB bigBed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF391GBE 12990724 ENCODE Processing Pipeline a050ca791fc1e58d89f0d72b875c927c https://www.encodeproject.org/files/ENCFF306RJB/@@download/ENCFF306RJB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF107VTI bed narrowPeak conservative idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF087YUB, ENCFF391GBE, ENCFF419RSJ, ENCFF479DMK 257379 ENCODE Processing Pipeline af2d63a4f3521d98358aaa9d1b629552 https://www.encodeproject.org/files/ENCFF107VTI/@@download/ENCFF107VTI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF662WPN bed narrowPeak optimal idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF087YUB, ENCFF391GBE, ENCFF419RSJ, ENCFF479DMK 273144 ENCODE Processing Pipeline c62ec7b0e5aa0d3196d5f29a760c10fe https://www.encodeproject.org/files/ENCFF662WPN/@@download/ENCFF662WPN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF642HUK bigBed narrowPeak conservative idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF107VTI 589925 ENCODE Processing Pipeline 69b54d6a15cf14b364029b4cb7445a36 https://www.encodeproject.org/files/ENCFF642HUK/@@download/ENCFF642HUK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF541ZGX bigBed narrowPeak optimal idr thresholded peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF662WPN 614991 ENCODE Processing Pipeline 5f653735c66cf1156f1139feef290c6a https://www.encodeproject.org/files/ENCFF541ZGX/@@download/ENCFF541ZGX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000XPQ bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XQM 305880136 Michael Snyder, Stanford 7bebab4e53d3bcb4be1f3347807697d7 https://www.encodeproject.org/files/ENCFF000XPQ/@@download/ENCFF000XPQ.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPU bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XQN 393527466 Michael Snyder, Stanford 97789a9ec9dadce101f72113dbd3d67d https://www.encodeproject.org/files/ENCFF000XPU/@@download/ENCFF000XPU.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPV bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJZ 5582969 Michael Snyder, Stanford 701ea3fe2cd187991e3fbaf97e339ff1 https://www.encodeproject.org/files/ENCFF000XPV/@@download/ENCFF000XPV.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPW bigWig signal ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 308754270 Michael Snyder, Stanford 30bc952054caa4d9d3e33cdbe6bed74b https://www.encodeproject.org/files/ENCFF000XPW/@@download/ENCFF000XPW.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XQM fastq reads ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 578136475 Michael Snyder, Stanford 8b9f611844442e84c83f5c13dd41146f https://www.encodeproject.org/files/ENCFF000XQM/@@download/ENCFF000XQM.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XQN fastq reads ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 919592787 Michael Snyder, Stanford dc60fe2cc52c95cfaf754bdfc162a867 https://www.encodeproject.org/files/ENCFF000XQN/@@download/ENCFF000XQN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VJZ bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2707641 Michael Snyder, Stanford d67d5b84c25c4b37087a5885a081d002 https://www.encodeproject.org/files/ENCFF001VJZ/@@download/ENCFF001VJZ.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CTW bed narrowPeak optimal idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1359017 ENCODE Consortium Analysis Working Group 92ef073fbaf203c55bf9a8420c1d47e8 https://www.encodeproject.org/files/ENCFF002CTW/@@download/ENCFF002CTW.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF883VNB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTW 3029861 ENCODE Consortium f205cb934eafdc7d093618ad6e351570 https://www.encodeproject.org/files/ENCFF883VNB/@@download/ENCFF883VNB.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF771OJT bam unfiltered alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQM, ENCFF807MUK 703421427 ENCODE Processing Pipeline 4ef8368fa18352556c0fe03fa68c2b08 https://www.encodeproject.org/files/ENCFF771OJT/@@download/ENCFF771OJT.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF867DTO bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQM, ENCFF807MUK 459577908 ENCODE Processing Pipeline 7a9294e9e142574e73f92137c768ad68 https://www.encodeproject.org/files/ENCFF867DTO/@@download/ENCFF867DTO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF209PMY bam unfiltered alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQN, ENCFF807MUK 1140237338 ENCODE Processing Pipeline c51e3cc1fec69858b68d3d2b93281bb7 https://www.encodeproject.org/files/ENCFF209PMY/@@download/ENCFF209PMY.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF355LJR bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQN, ENCFF807MUK 786763881 ENCODE Processing Pipeline cbbcb443ed3a59fbd6dc562515e21705 https://www.encodeproject.org/files/ENCFF355LJR/@@download/ENCFF355LJR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF347QQH bam unfiltered alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQN, ENCFF643CGH 1145686755 ENCODE Processing Pipeline 35daa910a2adfd55537a13f3f07b52ea https://www.encodeproject.org/files/ENCFF347QQH/@@download/ENCFF347QQH.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF677PSB bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQM, ENCFF643CGH 459436252 ENCODE Processing Pipeline 2dda0cb5d35703eacb7eafb91501fc8d https://www.encodeproject.org/files/ENCFF677PSB/@@download/ENCFF677PSB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF270RFR bam unfiltered alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQM, ENCFF643CGH 706278043 ENCODE Processing Pipeline 4876beffd8ca3b5f40e2933d32741ae7 https://www.encodeproject.org/files/ENCFF270RFR/@@download/ENCFF270RFR.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514FUP bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQN, ENCFF643CGH 786330634 ENCODE Processing Pipeline a6b261d0edf53b4af50899b40b833d98 https://www.encodeproject.org/files/ENCFF514FUP/@@download/ENCFF514FUP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF537LDZ bigWig signal p-value ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF355LJR, ENCFF867DTO 667494297 ENCODE Processing Pipeline 859d70f12a63edfd08833c3fac7da813 https://www.encodeproject.org/files/ENCFF537LDZ/@@download/ENCFF537LDZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF359DUK bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF355LJR 4845278 ENCODE Processing Pipeline d5d4b94701097a50c57b885794f761d8 https://www.encodeproject.org/files/ENCFF359DUK/@@download/ENCFF359DUK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430JQO bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF677PSB 4979407 ENCODE Processing Pipeline 53eeeaadc4ed0b0fa375ca2496564fb7 https://www.encodeproject.org/files/ENCFF430JQO/@@download/ENCFF430JQO.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF988CGH bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF514FUP, ENCFF677PSB 6009869 ENCODE Processing Pipeline b7c6f3a0e2e0bff1b112ecb4194a379d https://www.encodeproject.org/files/ENCFF988CGH/@@download/ENCFF988CGH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF899YIY bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HFC 11194055 ENCODE Processing Pipeline 3c4e3e125f8c319bedb713ec77f331f4 https://www.encodeproject.org/files/ENCFF899YIY/@@download/ENCFF899YIY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF087HWW bigWig signal p-value ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF867DTO 442656588 ENCODE Processing Pipeline e2f5d9aa2ec423a9090b7b9598091419 https://www.encodeproject.org/files/ENCFF087HWW/@@download/ENCFF087HWW.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF408TEJ bigWig signal p-value ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF355LJR 532964438 ENCODE Processing Pipeline afacdd4b2f104898582d95758304941a https://www.encodeproject.org/files/ENCFF408TEJ/@@download/ENCFF408TEJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF319IEF bed narrowPeak optimal idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF359DUK, ENCFF578MYY, ENCFF684XQE 898132 ENCODE Processing Pipeline 27ed624082593d867ab0b13fc13c0765 https://www.encodeproject.org/files/ENCFF319IEF/@@download/ENCFF319IEF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF433HFC bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF514FUP 4807755 ENCODE Processing Pipeline c3be72e4683359a4c3c4f35277faf332 https://www.encodeproject.org/files/ENCFF433HFC/@@download/ENCFF433HFC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF207MUN bed narrowPeak conservative idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF430JQO, ENCFF433HFC, ENCFF988CGH 622680 ENCODE Processing Pipeline f200a436714ffd89c191ddb929e66184 https://www.encodeproject.org/files/ENCFF207MUN/@@download/ENCFF207MUN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF915ZYE bed narrowPeak optimal idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF430JQO, ENCFF433HFC, ENCFF988CGH 894762 ENCODE Processing Pipeline 646a05655761b746834367c803883c45 https://www.encodeproject.org/files/ENCFF915ZYE/@@download/ENCFF915ZYE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF902HKL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF915ZYE 1525114 ENCODE Processing Pipeline 5fd76d9e302343e40962643a94f01458 https://www.encodeproject.org/files/ENCFF902HKL/@@download/ENCFF902HKL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF487WMH bigWig fold change over control ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF867DTO 259417350 ENCODE Processing Pipeline 0bb5fbd0497ac7ab200fb475444bed13 https://www.encodeproject.org/files/ENCFF487WMH/@@download/ENCFF487WMH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF578MYY bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF867DTO 4975123 ENCODE Processing Pipeline dd00434db40aa109c103280531fc37c1 https://www.encodeproject.org/files/ENCFF578MYY/@@download/ENCFF578MYY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379JNY bigWig fold change over control ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF677PSB 257160842 ENCODE Processing Pipeline 4aa31fd8c418a82314d585500ab490af https://www.encodeproject.org/files/ENCFF379JNY/@@download/ENCFF379JNY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF301RWG bigWig fold change over control ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF355LJR 428948541 ENCODE Processing Pipeline 7ed0547bcadf42a6aaac1608b09b2655 https://www.encodeproject.org/files/ENCFF301RWG/@@download/ENCFF301RWG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF812DOO bigWig fold change over control ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF355LJR, ENCFF867DTO 603485437 ENCODE Processing Pipeline 30d29d9820fd5bef3095ebcb266c4820 https://www.encodeproject.org/files/ENCFF812DOO/@@download/ENCFF812DOO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF684XQE bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF355LJR, ENCFF867DTO 6006931 ENCODE Processing Pipeline a61510790ee50617dc5f6b2d3a214b86 https://www.encodeproject.org/files/ENCFF684XQE/@@download/ENCFF684XQE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF528CTF bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF578MYY 11617174 ENCODE Processing Pipeline 4a1d0256cb83bd21c6d0fb5a1e5ba2b1 https://www.encodeproject.org/files/ENCFF528CTF/@@download/ENCFF528CTF.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF318YHQ bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF359DUK 11170105 ENCODE Processing Pipeline e6a402368e45a7b49ffefe9a264d575b https://www.encodeproject.org/files/ENCFF318YHQ/@@download/ENCFF318YHQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF521LSP bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF684XQE 12030048 ENCODE Processing Pipeline a17657eee39ecfaabbed7cdca9bc4f8f https://www.encodeproject.org/files/ENCFF521LSP/@@download/ENCFF521LSP.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF419CGD bed narrowPeak conservative idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF359DUK, ENCFF578MYY, ENCFF684XQE 616350 ENCODE Processing Pipeline 24e7a2cc5eabf65edde824aa05eb28dc https://www.encodeproject.org/files/ENCFF419CGD/@@download/ENCFF419CGD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF931UAM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419CGD 1144982 ENCODE Processing Pipeline 2fed0d7c056b49f97e108553f84bfe3b https://www.encodeproject.org/files/ENCFF931UAM/@@download/ENCFF931UAM.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699RMW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF319IEF 1530431 ENCODE Processing Pipeline 64b3d0be210654659ad342de92717c2e https://www.encodeproject.org/files/ENCFF699RMW/@@download/ENCFF699RMW.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF927SIL bigWig signal p-value ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF677PSB 467663135 ENCODE Processing Pipeline d2ac65b07efb94110ee113ce7ea17e10 https://www.encodeproject.org/files/ENCFF927SIL/@@download/ENCFF927SIL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282WDO bigWig signal p-value ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF514FUP, ENCFF677PSB 667055775 ENCODE Processing Pipeline a5bbe00b4246d02a0ca01a2ba0f8c968 https://www.encodeproject.org/files/ENCFF282WDO/@@download/ENCFF282WDO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF854OJC bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF430JQO 11623398 ENCODE Processing Pipeline 96d8517e6458f32675ee809c9c34f4d3 https://www.encodeproject.org/files/ENCFF854OJC/@@download/ENCFF854OJC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952KMJ bigBed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF988CGH 12033068 ENCODE Processing Pipeline 94715118f708fa7060a90a2cdae95164 https://www.encodeproject.org/files/ENCFF952KMJ/@@download/ENCFF952KMJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF635ISX bigWig signal p-value ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF514FUP 481942346 ENCODE Processing Pipeline 30459c7b37d4839bfb0afa93c8d73a14 https://www.encodeproject.org/files/ENCFF635ISX/@@download/ENCFF635ISX.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF598PJJ bigWig fold change over control ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF514FUP 428045064 ENCODE Processing Pipeline fd66796835a60f31be9ee3b3c2b95490 https://www.encodeproject.org/files/ENCFF598PJJ/@@download/ENCFF598PJJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF154FVM bigWig fold change over control ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF514FUP, ENCFF677PSB 607986427 ENCODE Processing Pipeline 3923fd5af6665a1709b5baf12ba2eff9 https://www.encodeproject.org/files/ENCFF154FVM/@@download/ENCFF154FVM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF958LQL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF207MUN 1153319 ENCODE Processing Pipeline 102b909629114dff7924b6bbf59425ab https://www.encodeproject.org/files/ENCFF958LQL/@@download/ENCFF958LQL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVL bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XVT 402960150 Michael Snyder, Stanford c1f3a74b81a84de60096b5b003766075 https://www.encodeproject.org/files/ENCFF000XVL/@@download/ENCFF000XVL.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVM bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKQ 1468180 Michael Snyder, Stanford 5dc1b2010a846805e69adf84f88679a4 https://www.encodeproject.org/files/ENCFF000XVM/@@download/ENCFF000XVM.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVN bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XVS 483019387 Michael Snyder, Stanford eeb3bfda1ad625d117646193d092f3dc https://www.encodeproject.org/files/ENCFF000XVN/@@download/ENCFF000XVN.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVO bigWig signal ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 354554656 Michael Snyder, Stanford d4c5579e9c5946d50c157ba502e934f0 https://www.encodeproject.org/files/ENCFF000XVO/@@download/ENCFF000XVO.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XVS fastq reads ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 940160284 Michael Snyder, Stanford 857e575126c3907b694420a47f121adc https://www.encodeproject.org/files/ENCFF000XVS/@@download/ENCFF000XVS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XVT fastq reads ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 720803780 Michael Snyder, Stanford d7bf481c26a6acebb0895bccf770c760 https://www.encodeproject.org/files/ENCFF000XVT/@@download/ENCFF000XVT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKQ bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 654497 Michael Snyder, Stanford 04470fbb0ce8e016739920216e6751bd https://www.encodeproject.org/files/ENCFF001VKQ/@@download/ENCFF001VKQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CUN bed narrowPeak optimal idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 175455 ENCODE Consortium Analysis Working Group 4dd80c054af7af291d3222c76720131e https://www.encodeproject.org/files/ENCFF002CUN/@@download/ENCFF002CUN.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF735SRO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUN 448451 ENCODE Consortium b966c7081d0eef70e87e77979c4edc51 https://www.encodeproject.org/files/ENCFF735SRO/@@download/ENCFF735SRO.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF789FCX bam unfiltered alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVT, ENCFF643CGH 897589656 ENCODE Processing Pipeline a93e721c1958a42eb94f4efb9a8c1fa2 https://www.encodeproject.org/files/ENCFF789FCX/@@download/ENCFF789FCX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF953FZD bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVT, ENCFF643CGH 605880899 ENCODE Processing Pipeline 1d2820baecd9838cd659b9b56ba14d48 https://www.encodeproject.org/files/ENCFF953FZD/@@download/ENCFF953FZD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF134HIF bam unfiltered alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVS, ENCFF643CGH 1168107360 ENCODE Processing Pipeline 8cd97c8a648bb517278c1fff9d97e988 https://www.encodeproject.org/files/ENCFF134HIF/@@download/ENCFF134HIF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352YDX bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVS, ENCFF643CGH 778153833 ENCODE Processing Pipeline 11301d1c9fd88a8f468db53f2fc550b4 https://www.encodeproject.org/files/ENCFF352YDX/@@download/ENCFF352YDX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF552GXW bam unfiltered alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVT, ENCFF807MUK 893174108 ENCODE Processing Pipeline 334114f62ffe4e0e253650b53865ce9f https://www.encodeproject.org/files/ENCFF552GXW/@@download/ENCFF552GXW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF492BAI bam unfiltered alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVS, ENCFF807MUK 1162154096 ENCODE Processing Pipeline 40a83dc7e89703a2917dd76c900686eb https://www.encodeproject.org/files/ENCFF492BAI/@@download/ENCFF492BAI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF608WKP bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVT, ENCFF807MUK 606241733 ENCODE Processing Pipeline f255212e0cc87ac738d27c85a324b7f3 https://www.encodeproject.org/files/ENCFF608WKP/@@download/ENCFF608WKP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF157CZE bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVS, ENCFF807MUK 778538668 ENCODE Processing Pipeline ebe565306d9d8c99df3db00abd54aee0 https://www.encodeproject.org/files/ENCFF157CZE/@@download/ENCFF157CZE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF578HYG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF054JWD 304214 ENCODE Processing Pipeline b174df01e82e40af8b71286b8373eb24 https://www.encodeproject.org/files/ENCFF578HYG/@@download/ENCFF578HYG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604ABG bigWig signal p-value ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF157CZE, ENCFF608WKP 722903164 ENCODE Processing Pipeline 33311a4956fcbc6942f85d4b5c368f39 https://www.encodeproject.org/files/ENCFF604ABG/@@download/ENCFF604ABG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF508ZEB bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF608WKP 5092416 ENCODE Processing Pipeline 5cf274f882dd9c0850301639ad1440b3 https://www.encodeproject.org/files/ENCFF508ZEB/@@download/ENCFF508ZEB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416FNH bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF157CZE 5140414 ENCODE Processing Pipeline ebc91754346f4bf8ceb120368730384b https://www.encodeproject.org/files/ENCFF416FNH/@@download/ENCFF416FNH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF877PLO bigWig signal p-value ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF608WKP 514678330 ENCODE Processing Pipeline 723d7639fa85ca0b3b8de0f179ad2bee https://www.encodeproject.org/files/ENCFF877PLO/@@download/ENCFF877PLO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF581OKS bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF119LSM 9128180 ENCODE Processing Pipeline 11c54a8e27b3d3969f2d2246c0bb8dfb https://www.encodeproject.org/files/ENCFF581OKS/@@download/ENCFF581OKS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259JWD bed narrowPeak optimal idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF119LSM, ENCFF416FNH, ENCFF508ZEB 160207 ENCODE Processing Pipeline bb6fc9f0d80179bf7b4c03b16f98fb21 https://www.encodeproject.org/files/ENCFF259JWD/@@download/ENCFF259JWD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF632FVW bigWig fold change over control ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF157CZE, ENCFF608WKP 708964042 ENCODE Processing Pipeline 436fdf2c1ae5834fade902823c3486ff https://www.encodeproject.org/files/ENCFF632FVW/@@download/ENCFF632FVW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF030BJV bigWig signal p-value ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF157CZE 483480890 ENCODE Processing Pipeline 833da272d5e85a3b24c34399e26c9933 https://www.encodeproject.org/files/ENCFF030BJV/@@download/ENCFF030BJV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF119LSM bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF157CZE, ENCFF608WKP 4048297 ENCODE Processing Pipeline becb18a0f5c3867c9502e5629fb18f27 https://www.encodeproject.org/files/ENCFF119LSM/@@download/ENCFF119LSM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF005MQU bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF508ZEB 11033200 ENCODE Processing Pipeline 4c9db682a63ab37344214d56b195e0e9 https://www.encodeproject.org/files/ENCFF005MQU/@@download/ENCFF005MQU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF252HQN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF259JWD 328979 ENCODE Processing Pipeline 6f43ec1ffbe013c36b72bfb270580f10 https://www.encodeproject.org/files/ENCFF252HQN/@@download/ENCFF252HQN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF999ZHG bigWig fold change over control ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF608WKP 369772932 ENCODE Processing Pipeline 8038910a5c1fc00ea30a604f8eb33ea5 https://www.encodeproject.org/files/ENCFF999ZHG/@@download/ENCFF999ZHG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF729MRK bigWig fold change over control ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF157CZE 428696307 ENCODE Processing Pipeline 2ead1d77db009b481c8fa40c290e653d https://www.encodeproject.org/files/ENCFF729MRK/@@download/ENCFF729MRK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF064JOQ bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF416FNH 11086714 ENCODE Processing Pipeline 71f22756656c9c8841117682096fdb19 https://www.encodeproject.org/files/ENCFF064JOQ/@@download/ENCFF064JOQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF054JWD bed narrowPeak conservative idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF119LSM, ENCFF416FNH, ENCFF508ZEB 143396 ENCODE Processing Pipeline 3ea67bb022d5a76e382383d4001b3502 https://www.encodeproject.org/files/ENCFF054JWD/@@download/ENCFF054JWD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF252VHO bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF352YDX 4989998 ENCODE Processing Pipeline 3b89c71c844f44e2b54648712bb62329 https://www.encodeproject.org/files/ENCFF252VHO/@@download/ENCFF252VHO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF974DOF bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF252VHO 11042730 ENCODE Processing Pipeline bb2488fdaace26726c688f813f6e31e4 https://www.encodeproject.org/files/ENCFF974DOF/@@download/ENCFF974DOF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF806JJS bed narrowPeak optimal idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF252VHO, ENCFF419RSJ, ENCFF818OPB, ENCFF962WWH 162921 ENCODE Processing Pipeline 57a936d28e364da517a0efdcd7ddf653 https://www.encodeproject.org/files/ENCFF806JJS/@@download/ENCFF806JJS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228MXF bigWig signal p-value ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF953FZD 488418759 ENCODE Processing Pipeline fa6d566f2ca55772ea1fa53f49082102 https://www.encodeproject.org/files/ENCFF228MXF/@@download/ENCFF228MXF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748AXI bigWig signal p-value ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF352YDX, ENCFF953FZD 698764770 ENCODE Processing Pipeline 9f0a687e21614f95763e32aaa67b1294 https://www.encodeproject.org/files/ENCFF748AXI/@@download/ENCFF748AXI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF396GPU bigWig fold change over control ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF352YDX 417388944 ENCODE Processing Pipeline ca6627438459cba004bf2e85306209e3 https://www.encodeproject.org/files/ENCFF396GPU/@@download/ENCFF396GPU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF930QUH bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF962WWH 11038159 ENCODE Processing Pipeline 4d1a181c10932e35a713d7874322f706 https://www.encodeproject.org/files/ENCFF930QUH/@@download/ENCFF930QUH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339LOH bed narrowPeak conservative idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF252VHO, ENCFF419RSJ, ENCFF818OPB, ENCFF962WWH 141986 ENCODE Processing Pipeline 13b664dc34ef5f008fd33f7ce6fad801 https://www.encodeproject.org/files/ENCFF339LOH/@@download/ENCFF339LOH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF466SWH bigWig signal p-value ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF352YDX 517279320 ENCODE Processing Pipeline 3430a52fb17e5c2a5ae3e890a57948a9 https://www.encodeproject.org/files/ENCFF466SWH/@@download/ENCFF466SWH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF297OWS bigWig fold change over control ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF953FZD 376315449 ENCODE Processing Pipeline 205f671caa111b0c165e96731d43bdc6 https://www.encodeproject.org/files/ENCFF297OWS/@@download/ENCFF297OWS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818OPB bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF352YDX, ENCFF953FZD 4018712 ENCODE Processing Pipeline 37e7493411435a9b57218e62410fb487 https://www.encodeproject.org/files/ENCFF818OPB/@@download/ENCFF818OPB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF257OSW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF339LOH 302933 ENCODE Processing Pipeline 2b100a452ccf608ea0e0f666464693c0 https://www.encodeproject.org/files/ENCFF257OSW/@@download/ENCFF257OSW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF432IMS bigWig fold change over control ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF352YDX, ENCFF953FZD 675803351 ENCODE Processing Pipeline a926d44e66807647839e18f478e89b3c https://www.encodeproject.org/files/ENCFF432IMS/@@download/ENCFF432IMS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF114NXK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF806JJS 333886 ENCODE Processing Pipeline 2b98f50d5b3cb6433f668db30d60d3d2 https://www.encodeproject.org/files/ENCFF114NXK/@@download/ENCFF114NXK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF423MUL bigBed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF818OPB 9047214 ENCODE Processing Pipeline 6e00fe27621cc24e9c0a132dcd1f3f4d https://www.encodeproject.org/files/ENCFF423MUL/@@download/ENCFF423MUL.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962WWH bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF953FZD 5091165 ENCODE Processing Pipeline 49acdb43787266600445fb3e05e24496 https://www.encodeproject.org/files/ENCFF962WWH/@@download/ENCFF962WWH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XRW bam alignments ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XSK 169795424 Michael Snyder, Stanford 4557402df23cb5b75377cea4626b8db6 https://www.encodeproject.org/files/ENCFF000XRW/@@download/ENCFF000XRW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRX bigBed narrowPeak peaks ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKG 115444 Michael Snyder, Stanford 9f1de59a13f5f02591b7654c24087e03 https://www.encodeproject.org/files/ENCFF000XRX/@@download/ENCFF000XRX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRY bigWig signal ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 285566041 Michael Snyder, Stanford f6539d91147edbd925ed07cef2b0aecb https://www.encodeproject.org/files/ENCFF000XRY/@@download/ENCFF000XRY.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XRZ bam alignments ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XSL 252027576 Michael Snyder, Stanford bd4b67e748bb9b60bfa2213c4179bfa6 https://www.encodeproject.org/files/ENCFF000XRZ/@@download/ENCFF000XRZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XSK fastq reads ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 127290826 Michael Snyder, Stanford f3d4a23151ca05e5d4e7644eecee4bb1 https://www.encodeproject.org/files/ENCFF000XSK/@@download/ENCFF000XSK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF000XSL fastq reads ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 192362334 Michael Snyder, Stanford fe41a233775cdd68df617a0684d9f854 https://www.encodeproject.org/files/ENCFF000XSL/@@download/ENCFF000XSL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF001VKG bed narrowPeak peaks ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 15036 Michael Snyder, Stanford 88210c8ae80c8ba2611b0f6ff6452dc4 https://www.encodeproject.org/files/ENCFF001VKG/@@download/ENCFF001VKG.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CUD bed narrowPeak optimal idr thresholded peaks ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 33058 ENCODE Consortium Analysis Working Group ac168e3835bf300e78e7f95c92016980 https://www.encodeproject.org/files/ENCFF002CUD/@@download/ENCFF002CUD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF859XQQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUD 124471 ENCODE Consortium 15a94984fabfae17ac1ba1bcbc1878c4 https://www.encodeproject.org/files/ENCFF859XQQ/@@download/ENCFF859XQQ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000NAT bam alignments ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NBH 1441210091 Richard Myers, HAIB b829bc4b558c9615b85e48f0f5a617fa https://www.encodeproject.org/files/ENCFF000NAT/@@download/ENCFF000NAT.bam hg19 released biological replicates with identical biosample ENCFF000NAV bigBed broadPeak peaks ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TSL 241834 Richard Myers, HAIB d9f6a4fd644bc1796b8644c32b9142f7 https://www.encodeproject.org/files/ENCFF000NAV/@@download/ENCFF000NAV.bigBed hg19 released biological replicates with identical biosample ENCFF000NAW bigBed broadPeak peaks ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TSM 630349 Richard Myers, HAIB 192ece129d3e48482d9cd4f54409eee1 https://www.encodeproject.org/files/ENCFF000NAW/@@download/ENCFF000NAW.bigBed hg19 released biological replicates with identical biosample ENCFF000NAX bam alignments ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NBM 1628324074 Richard Myers, HAIB 6b0432642ed609d5d9bd191cc7a7a549 https://www.encodeproject.org/files/ENCFF000NAX/@@download/ENCFF000NAX.bam hg19 released biological replicates with identical biosample ENCFF000NAZ bigWig raw signal ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 149778643 Richard Myers, HAIB 9f842b496ef5e71c79049c2d2589a012 https://www.encodeproject.org/files/ENCFF000NAZ/@@download/ENCFF000NAZ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NBB bigWig raw signal ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 217872764 Richard Myers, HAIB 5e61aa934aa86b2b27f71af5279abd54 https://www.encodeproject.org/files/ENCFF000NBB/@@download/ENCFF000NBB.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NBH fastq reads ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1483891482 Richard Myers, HAIB ce0eca1e5d074fe4a43fe55211aea777 https://www.encodeproject.org/files/ENCFF000NBH/@@download/ENCFF000NBH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGM/ released biological replicates with identical biosample ENCFF000NBM fastq reads ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1691930748 Richard Myers, HAIB e7551f302e1c43a862f31b699ad8e16c https://www.encodeproject.org/files/ENCFF000NBM/@@download/ENCFF000NBM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF001TSL bed broadPeak peaks ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 99783 Richard Myers, HAIB 9c19facfd72a880a634175cd565945f4 https://www.encodeproject.org/files/ENCFF001TSL/@@download/ENCFF001TSL.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TSM bed broadPeak peaks ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 325506 Richard Myers, HAIB d6fc5c96f99837b6b173aeac24921736 https://www.encodeproject.org/files/ENCFF001TSM/@@download/ENCFF001TSM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF733YBM fastq reads ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 1 40 single-ended 501597164 Xiang-Dong Fu, UCSD 96a80dd8291795136d849f0f999d479e SRA:SRR6214373 https://www.encodeproject.org/files/ENCFF733YBM/@@download/ENCFF733YBM.fastq.gz Illumina HiSeq 2500 /files/ENCFF605JOL/ released low read length, mild to moderate bottlenecking, low read depth ENCFF251CER fastq reads ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 1 40 single-ended 479435987 Xiang-Dong Fu, UCSD a9f8fe909e8af4e2212b320c8afc9548 SRA:SRR6214374 https://www.encodeproject.org/files/ENCFF251CER/@@download/ENCFF251CER.fastq.gz Illumina HiSeq 2500 /files/ENCFF061XKR/ released low read length, mild to moderate bottlenecking, low read depth ENCFF807JYY bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF251CER, ENCFF807MUK 393560303 ENCODE Processing Pipeline 176e6e362eab17557a68b76e2d8b1642 https://www.encodeproject.org/files/ENCFF807JYY/@@download/ENCFF807JYY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF720TPS bam unfiltered alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF251CER, ENCFF807MUK 582123892 ENCODE Processing Pipeline 2032871a0e0c7aaa404237057750d165 https://www.encodeproject.org/files/ENCFF720TPS/@@download/ENCFF720TPS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF198IJO bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF733YBM, ENCFF807MUK 388823449 ENCODE Processing Pipeline f945e6a4d335e789d19a3aeb23ce709f https://www.encodeproject.org/files/ENCFF198IJO/@@download/ENCFF198IJO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF739WOA bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF251CER, ENCFF643CGH 392817975 ENCODE Processing Pipeline 4428b15a555c77ac33aef0c17e61b465 https://www.encodeproject.org/files/ENCFF739WOA/@@download/ENCFF739WOA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF308IPC bam unfiltered alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF733YBM 599120606 ENCODE Processing Pipeline df2fdb69eddb2c07869e3e9de9666550 https://www.encodeproject.org/files/ENCFF308IPC/@@download/ENCFF308IPC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF275WHJ bam unfiltered alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF251CER, ENCFF643CGH 582877585 ENCODE Processing Pipeline e5f2205e33aa92e50427cc9f70372f6c https://www.encodeproject.org/files/ENCFF275WHJ/@@download/ENCFF275WHJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF141AHN bam unfiltered alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF733YBM, ENCFF807MUK 598431162 ENCODE Processing Pipeline 87b0fec881e9506c7cd626ed62a47826 https://www.encodeproject.org/files/ENCFF141AHN/@@download/ENCFF141AHN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF033GIO bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF733YBM 388047977 ENCODE Processing Pipeline fd9983453030ad767b243b073326c185 https://www.encodeproject.org/files/ENCFF033GIO/@@download/ENCFF033GIO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF435JRI bigWig fold change over control ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF198IJO, ENCFF462KWM 214876505 ENCODE Processing Pipeline 20384df27ce98b9604a04c25355dff0f https://www.encodeproject.org/files/ENCFF435JRI/@@download/ENCFF435JRI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF525AZD bigBed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF176EEQ 10933281 ENCODE Processing Pipeline 441a159beb68c270fff6783819886d03 https://www.encodeproject.org/files/ENCFF525AZD/@@download/ENCFF525AZD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF325DOM bigBed narrowPeak optimal idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF663YBI 1741158 ENCODE Processing Pipeline 08ff11b17ad7d95d51ce0e83e97d5fda https://www.encodeproject.org/files/ENCFF325DOM/@@download/ENCFF325DOM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF960MBV bigWig fold change over control ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100SSC, ENCFF198IJO, ENCFF462KWM, ENCFF807JYY 476979362 ENCODE Processing Pipeline c46b27ac5985ea195f8bc36ab4007bb9 https://www.encodeproject.org/files/ENCFF960MBV/@@download/ENCFF960MBV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF920RWB bigBed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF543ACC 10820990 ENCODE Processing Pipeline cae295bed548edf2d4d7fa143cde92c6 https://www.encodeproject.org/files/ENCFF920RWB/@@download/ENCFF920RWB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF836XQE bigBed narrowPeak conservative idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF390PNX 1722649 ENCODE Processing Pipeline f4de753e4e7841da8567a485dcb8c4d4 https://www.encodeproject.org/files/ENCFF836XQE/@@download/ENCFF836XQE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF663YBI bed narrowPeak optimal idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF176EEQ, ENCFF543ACC, ENCFF743KRF 884540 ENCODE Processing Pipeline 287cfe54371940bfc646bdb49a71483e https://www.encodeproject.org/files/ENCFF663YBI/@@download/ENCFF663YBI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF741YAI bigWig signal p-value ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100SSC, ENCFF807JYY 435405447 ENCODE Processing Pipeline 3a84a0169dabeb05bdcc5408be930855 https://www.encodeproject.org/files/ENCFF741YAI/@@download/ENCFF741YAI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF237RIA bigWig fold change over control ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100SSC, ENCFF807JYY 214729624 ENCODE Processing Pipeline d6d8a4075da85d2bf702349580fd82fd https://www.encodeproject.org/files/ENCFF237RIA/@@download/ENCFF237RIA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF543ACC bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100SSC, ENCFF807JYY 6172983 ENCODE Processing Pipeline 91071736128c67014e0b60d87495eee3 https://www.encodeproject.org/files/ENCFF543ACC/@@download/ENCFF543ACC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF651HVB bigBed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF743KRF 10198345 ENCODE Processing Pipeline 50d835781339f27913437113ff2e33f9 https://www.encodeproject.org/files/ENCFF651HVB/@@download/ENCFF651HVB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF476ONS bigWig signal p-value ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF198IJO, ENCFF462KWM 479902204 ENCODE Processing Pipeline 81eb63e056228fa71a0d8d2c84db4c60 https://www.encodeproject.org/files/ENCFF476ONS/@@download/ENCFF476ONS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF743KRF bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF198IJO, ENCFF462KWM 5805233 ENCODE Processing Pipeline 169e12efb0c5bd4bd743beac4c454c2c https://www.encodeproject.org/files/ENCFF743KRF/@@download/ENCFF743KRF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF449IBC bigWig signal p-value ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100SSC, ENCFF198IJO, ENCFF462KWM, ENCFF807JYY 816649897 ENCODE Processing Pipeline 97bab8324f33ab1704eb251e0cfe0e19 https://www.encodeproject.org/files/ENCFF449IBC/@@download/ENCFF449IBC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF176EEQ bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF100SSC, ENCFF198IJO, ENCFF462KWM, ENCFF807JYY 6825440 ENCODE Processing Pipeline ed0d8ecd5e2c019aa853243bc0a7ad42 https://www.encodeproject.org/files/ENCFF176EEQ/@@download/ENCFF176EEQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF390PNX bed narrowPeak conservative idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF001TDO, ENCFF176EEQ, ENCFF543ACC, ENCFF743KRF 871362 ENCODE Processing Pipeline 8fa498026b5f929bef2a959ea6dfbddc https://www.encodeproject.org/files/ENCFF390PNX/@@download/ENCFF390PNX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF921QAQ bigWig signal p-value ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF739WOA, ENCFF874GUL 486623810 ENCODE Processing Pipeline e16aa56f59bb2805682c3595edd484dd https://www.encodeproject.org/files/ENCFF921QAQ/@@download/ENCFF921QAQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF133SEO bigWig signal p-value ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF033GIO, ENCFF719EDQ, ENCFF739WOA, ENCFF874GUL 818216896 ENCODE Processing Pipeline 435b6a4a322a2935ea71045faf6862e9 https://www.encodeproject.org/files/ENCFF133SEO/@@download/ENCFF133SEO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF025DFU bigWig fold change over control ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF033GIO, ENCFF719EDQ, ENCFF739WOA, ENCFF874GUL 475828866 ENCODE Processing Pipeline 64fe2c6343a766cf2725c6794cd90454 https://www.encodeproject.org/files/ENCFF025DFU/@@download/ENCFF025DFU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF062TEI bigBed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF014SMJ 10200038 ENCODE Processing Pipeline 11e49668c68d487f882fd5c6bdf6202c https://www.encodeproject.org/files/ENCFF062TEI/@@download/ENCFF062TEI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF216SBP bigBed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF744YFO 10930398 ENCODE Processing Pipeline 7d697c0d8fa7e6e65ba2fed0c76df091 https://www.encodeproject.org/files/ENCFF216SBP/@@download/ENCFF216SBP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF104WCC bigBed narrowPeak conservative idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF535XNA 1724205 ENCODE Processing Pipeline 2544726cc967e3104dc5c5002f082f2f https://www.encodeproject.org/files/ENCFF104WCC/@@download/ENCFF104WCC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF154CXD bigWig signal p-value ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF033GIO, ENCFF719EDQ 487787972 ENCODE Processing Pipeline 7dace44d7d5793379abace63741247d1 https://www.encodeproject.org/files/ENCFF154CXD/@@download/ENCFF154CXD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF161NZP bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF739WOA, ENCFF874GUL 5994983 ENCODE Processing Pipeline 0491f4faef2407280f8af2b542989d23 https://www.encodeproject.org/files/ENCFF161NZP/@@download/ENCFF161NZP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF719ZLM bigBed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF161NZP 10590663 ENCODE Processing Pipeline d8cbb46c7c2ea718cda3bfec740f9457 https://www.encodeproject.org/files/ENCFF719ZLM/@@download/ENCFF719ZLM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF535XNA bed narrowPeak conservative idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF014SMJ, ENCFF161NZP, ENCFF419RSJ, ENCFF744YFO 871177 ENCODE Processing Pipeline fd84f987311a3d01f383f06d3373a163 https://www.encodeproject.org/files/ENCFF535XNA/@@download/ENCFF535XNA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF871YRG bed narrowPeak optimal idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF014SMJ, ENCFF161NZP, ENCFF419RSJ, ENCFF744YFO 885111 ENCODE Processing Pipeline 7ca2ffaea70054f08b6146cdf99f9b7a https://www.encodeproject.org/files/ENCFF871YRG/@@download/ENCFF871YRG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF939HTZ bigBed narrowPeak optimal idr thresholded peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF871YRG 1745397 ENCODE Processing Pipeline 0d19f930a8cb60dad243864b6b080a2f https://www.encodeproject.org/files/ENCFF939HTZ/@@download/ENCFF939HTZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF032PLO bigWig fold change over control ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF033GIO, ENCFF719EDQ 215674672 ENCODE Processing Pipeline e9f124e2d4495de8802107776ccd46cf https://www.encodeproject.org/files/ENCFF032PLO/@@download/ENCFF032PLO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF508TBN bigWig fold change over control ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF739WOA, ENCFF874GUL 217151354 ENCODE Processing Pipeline 6246de17503aa4e08b5962d6de839760 https://www.encodeproject.org/files/ENCFF508TBN/@@download/ENCFF508TBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF014SMJ bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF033GIO, ENCFF719EDQ 5803470 ENCODE Processing Pipeline 52665081e99457cf93a1b539f1a21fc7 https://www.encodeproject.org/files/ENCFF014SMJ/@@download/ENCFF014SMJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF744YFO bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF033GIO, ENCFF719EDQ, ENCFF739WOA, ENCFF874GUL 6822262 ENCODE Processing Pipeline 560b6cf64240d57cf837f7dff186bb1e https://www.encodeproject.org/files/ENCFF744YFO/@@download/ENCFF744YFO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF000RGZ bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000RHM 853958319 Richard Myers, HAIB c40d2b199cdb076d832360507213c655 https://www.encodeproject.org/files/ENCFF000RGZ/@@download/ENCFF000RGZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHA bigBed broadPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001URD 134666 Richard Myers, HAIB 333a760781f40c60770e1eeada9668b4 https://www.encodeproject.org/files/ENCFF000RHA/@@download/ENCFF000RHA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHB bigBed broadPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001URE 141461 Richard Myers, HAIB 299d2123e378eba348bedf7eaf421750 https://www.encodeproject.org/files/ENCFF000RHB/@@download/ENCFF000RHB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHC bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000RHO 1075889668 Richard Myers, HAIB ffbe757fef6c39d74c5ed1f82f60dcbc https://www.encodeproject.org/files/ENCFF000RHC/@@download/ENCFF000RHC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHE bigWig raw signal ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 7667101 Richard Myers, HAIB 9dfc1ad1e4494cf69eb0a3bf093837a5 https://www.encodeproject.org/files/ENCFF000RHE/@@download/ENCFF000RHE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000RHG bigWig raw signal ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 9419624 Richard Myers, HAIB 831f730b385fc5447e009a32c5ab899e https://www.encodeproject.org/files/ENCFF000RHG/@@download/ENCFF000RHG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000RHM fastq reads ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 757210595 Richard Myers, HAIB 15aa54b2f95f7e90404fb2c36ef9c376 https://www.encodeproject.org/files/ENCFF000RHM/@@download/ENCFF000RHM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RHV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHO fastq reads ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 928138846 Richard Myers, HAIB ef6f3c6c4406d76ea33d7f5d43bf42f7 https://www.encodeproject.org/files/ENCFF000RHO/@@download/ENCFF000RHO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RHW/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001URD bed broadPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 1 44488 Richard Myers, HAIB 4319ffc936656a1a2d76a5b05b358d53 https://www.encodeproject.org/files/ENCFF001URD/@@download/ENCFF001URD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001URE bed broadPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 1 52241 Richard Myers, HAIB bfad9ad0d0f1ed987b8745c4e8671396 https://www.encodeproject.org/files/ENCFF001URE/@@download/ENCFF001URE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CNU bed narrowPeak optimal idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 106459 ENCODE Consortium Analysis Working Group a86dcd18070158bf29fd91d8da95f8dc https://www.encodeproject.org/files/ENCFF002CNU/@@download/ENCFF002CNU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF408GTT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNU 348100 ENCODE Consortium b72283d714be5dfcaa1f4a227fe4b237 https://www.encodeproject.org/files/ENCFF408GTT/@@download/ENCFF408GTT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF784CCE bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RHM, ENCFF643CGH 585835530 ENCODE Processing Pipeline 511e2444d15459920efc4620c1f064b6 https://www.encodeproject.org/files/ENCFF784CCE/@@download/ENCFF784CCE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF231RDV bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RHO, ENCFF643CGH 806886189 ENCODE Processing Pipeline 9ac9ff9cf88c8e8c5ce4ef1a978c47d2 https://www.encodeproject.org/files/ENCFF231RDV/@@download/ENCFF231RDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF294MUM bam unfiltered alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RHM, ENCFF643CGH 1050520982 ENCODE Processing Pipeline bdeaba6a24170d4a4ef4247ee59c2f17 https://www.encodeproject.org/files/ENCFF294MUM/@@download/ENCFF294MUM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF825VBO bam unfiltered alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RHO, ENCFF643CGH 1329589283 ENCODE Processing Pipeline fefc183ac831beb57e2ec546c7921ba5 https://www.encodeproject.org/files/ENCFF825VBO/@@download/ENCFF825VBO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF874QPH bam unfiltered alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RHM, ENCFF807MUK 1042612475 ENCODE Processing Pipeline cc8d97b5f17475093e627ab6bfe39dd7 https://www.encodeproject.org/files/ENCFF874QPH/@@download/ENCFF874QPH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF334WOO bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RHM, ENCFF807MUK 586122360 ENCODE Processing Pipeline 427a9501e58aa320adfb0f999dd4e733 https://www.encodeproject.org/files/ENCFF334WOO/@@download/ENCFF334WOO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF690QBI bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RHO, ENCFF807MUK 807155802 ENCODE Processing Pipeline 183c6a0e12e149ceb7f9e02ee3c79457 https://www.encodeproject.org/files/ENCFF690QBI/@@download/ENCFF690QBI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF232IAQ bam unfiltered alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RHO, ENCFF807MUK 1318567509 ENCODE Processing Pipeline 3d013a16b5c30c23409f440b3f299022 https://www.encodeproject.org/files/ENCFF232IAQ/@@download/ENCFF232IAQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF814TZO bigWig signal p-value ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF406KPS, ENCFF414YAT, ENCFF784CCE 436924146 ENCODE Processing Pipeline e16dbf2d3de4f75a2cf9f1e4edef65a0 https://www.encodeproject.org/files/ENCFF814TZO/@@download/ENCFF814TZO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF830HMN bigWig signal p-value ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF231RDV, ENCFF406KPS 248412938 ENCODE Processing Pipeline 009b899039a3526c7ad43c5b6135fa59 https://www.encodeproject.org/files/ENCFF830HMN/@@download/ENCFF830HMN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF581KRT bigWig fold change over control ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF231RDV, ENCFF406KPS 378505598 ENCODE Processing Pipeline 003606e03d233f4f37a8256d268320a7 https://www.encodeproject.org/files/ENCFF581KRT/@@download/ENCFF581KRT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946QMM bigWig fold change over control ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF406KPS, ENCFF414YAT, ENCFF784CCE 350204725 ENCODE Processing Pipeline 2ea8ddcee47db516a18b39f45545faec https://www.encodeproject.org/files/ENCFF946QMM/@@download/ENCFF946QMM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699ZTC bigWig signal p-value ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF231RDV, ENCFF406KPS, ENCFF414YAT, ENCFF784CCE 543804126 ENCODE Processing Pipeline fa2a8e029220f1659187958921e0c326 https://www.encodeproject.org/files/ENCFF699ZTC/@@download/ENCFF699ZTC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF373MQA bigWig fold change over control ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF231RDV, ENCFF406KPS, ENCFF414YAT, ENCFF784CCE 696686743 ENCODE Processing Pipeline 3897bb2aa5d57c43534de53e0a7aeb57 https://www.encodeproject.org/files/ENCFF373MQA/@@download/ENCFF373MQA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF702PXM bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF406KPS, ENCFF414YAT, ENCFF784CCE 4006053 ENCODE Processing Pipeline ced6ae468ad2753da7fdcafaa6f2c8bd https://www.encodeproject.org/files/ENCFF702PXM/@@download/ENCFF702PXM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF961DYG bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF231RDV, ENCFF406KPS 3965102 ENCODE Processing Pipeline 905b71b233bdaf2077c73b9feab55d9e https://www.encodeproject.org/files/ENCFF961DYG/@@download/ENCFF961DYG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF147EOZ bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF231RDV, ENCFF406KPS, ENCFF414YAT, ENCFF784CCE 4910486 ENCODE Processing Pipeline a73ef5d4850f83eee17cdd018a79126c https://www.encodeproject.org/files/ENCFF147EOZ/@@download/ENCFF147EOZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF076VQW bigBed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF702PXM 10375845 ENCODE Processing Pipeline 07738ffb2d499ecd27e9c05509ed996d https://www.encodeproject.org/files/ENCFF076VQW/@@download/ENCFF076VQW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF637WCT bed narrowPeak optimal idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF147EOZ, ENCFF419RSJ, ENCFF702PXM, ENCFF961DYG 78905 ENCODE Processing Pipeline fe91500d281df99f56582da702cf9afa https://www.encodeproject.org/files/ENCFF637WCT/@@download/ENCFF637WCT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF033ESZ bigBed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF147EOZ 11057020 ENCODE Processing Pipeline 19833492c0a852f1a5a1f644e95f4c0f https://www.encodeproject.org/files/ENCFF033ESZ/@@download/ENCFF033ESZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF649ZND bigBed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF961DYG 10177710 ENCODE Processing Pipeline f6917388d3ad21df595f88199778a654 https://www.encodeproject.org/files/ENCFF649ZND/@@download/ENCFF649ZND.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138KWB bed narrowPeak conservative idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF147EOZ, ENCFF419RSJ, ENCFF702PXM, ENCFF961DYG 54814 ENCODE Processing Pipeline 62d35a84aa5d78e8848d8741a2b65808 https://www.encodeproject.org/files/ENCFF138KWB/@@download/ENCFF138KWB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF594NYB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF138KWB 143933 ENCODE Processing Pipeline e9bb340fc6fe48f81e2314c2b632205c https://www.encodeproject.org/files/ENCFF594NYB/@@download/ENCFF594NYB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF378JVL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF637WCT 209975 ENCODE Processing Pipeline a3eabd70f803566b4420043ee25fb965 https://www.encodeproject.org/files/ENCFF378JVL/@@download/ENCFF378JVL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF851NEH bigWig signal p-value ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF002HVX, ENCFF334WOO, ENCFF698QEQ 428377649 ENCODE Processing Pipeline 6dfd05d068e738132d93a4af84f6ee9c https://www.encodeproject.org/files/ENCFF851NEH/@@download/ENCFF851NEH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF170IPK bigWig fold change over control ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF002HVX, ENCFF334WOO, ENCFF698QEQ 344912873 ENCODE Processing Pipeline c639eb6d1bf17e3804b9c0ba2c0ec5ca https://www.encodeproject.org/files/ENCFF170IPK/@@download/ENCFF170IPK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF150VRU bigWig signal p-value ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF002HVX, ENCFF690QBI 254919086 ENCODE Processing Pipeline 47105e30ad46a918b80d51b4f2d279b4 https://www.encodeproject.org/files/ENCFF150VRU/@@download/ENCFF150VRU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF805AKL bigWig signal p-value ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF002HVX, ENCFF334WOO, ENCFF690QBI, ENCFF698QEQ 546291038 ENCODE Processing Pipeline 1780e2ffed393fd16823fd51ee90dc03 https://www.encodeproject.org/files/ENCFF805AKL/@@download/ENCFF805AKL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF355REI bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF002HVX, ENCFF334WOO, ENCFF698QEQ 4007596 ENCODE Processing Pipeline 64f27625caa57837f4b95f7cc920d940 https://www.encodeproject.org/files/ENCFF355REI/@@download/ENCFF355REI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716CEW bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF002HVX, ENCFF334WOO, ENCFF690QBI, ENCFF698QEQ 4913348 ENCODE Processing Pipeline fe73ccbaddadf7866322d2cb1848be2e https://www.encodeproject.org/files/ENCFF716CEW/@@download/ENCFF716CEW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF313BKW bigWig fold change over control ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF002HVX, ENCFF334WOO, ENCFF690QBI, ENCFF698QEQ 705297024 ENCODE Processing Pipeline 71bd821345f0550c8f99dbc835468183 https://www.encodeproject.org/files/ENCFF313BKW/@@download/ENCFF313BKW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF467HMZ bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF002HVX, ENCFF690QBI 3965013 ENCODE Processing Pipeline 1362840114d5fb2d23a67ba4b732b554 https://www.encodeproject.org/files/ENCFF467HMZ/@@download/ENCFF467HMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF494WEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF475MKH 210399 ENCODE Processing Pipeline 2824fe60dc7f119454d5c63fadc9941f https://www.encodeproject.org/files/ENCFF494WEB/@@download/ENCFF494WEB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF018IZX bigWig fold change over control ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF002HVX, ENCFF690QBI 384026445 ENCODE Processing Pipeline b6e38e197a094e7f1411f8b0f77b75e7 https://www.encodeproject.org/files/ENCFF018IZX/@@download/ENCFF018IZX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF593FZC bigBed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF355REI 10365803 ENCODE Processing Pipeline 0feb9f373b290832c3f7efaa52e4a412 https://www.encodeproject.org/files/ENCFF593FZC/@@download/ENCFF593FZC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF348YKD bigBed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF716CEW 11052783 ENCODE Processing Pipeline c36532f7b9567168bec99ba7b5fe7a74 https://www.encodeproject.org/files/ENCFF348YKD/@@download/ENCFF348YKD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF567UAQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF055BMV 144016 ENCODE Processing Pipeline b6fba264f07a2b8e44dbd8e99dc0b6e1 https://www.encodeproject.org/files/ENCFF567UAQ/@@download/ENCFF567UAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF475MKH bed narrowPeak optimal idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF355REI, ENCFF467HMZ, ENCFF716CEW 78926 ENCODE Processing Pipeline 56c17819f25811479adb57587a078f5e https://www.encodeproject.org/files/ENCFF475MKH/@@download/ENCFF475MKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF055BMV bed narrowPeak conservative idr thresholded peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF355REI, ENCFF467HMZ, ENCFF716CEW 54868 ENCODE Processing Pipeline 8d361466f1c1d2756219831b1e5fa227 https://www.encodeproject.org/files/ENCFF055BMV/@@download/ENCFF055BMV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF860DSA bigBed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF467HMZ 10175683 ENCODE Processing Pipeline 53b616ea3086ee064e8ae91d7f6be2f6 https://www.encodeproject.org/files/ENCFF860DSA/@@download/ENCFF860DSA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145TGH fastq reads ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 2 ENCFF766EXH 4198023924 Michael Snyder, Stanford 8720b12fe256794e93f2c60d01e43ebb SRA:SRR5111311 https://www.encodeproject.org/files/ENCFF145TGH/@@download/ENCFF145TGH.fastq.gz Illumina HiSeq 2000 /files/ENCFF644IGO/ released ENCFF766EXH fastq reads ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 1 100 paired-ended 1 ENCFF145TGH 4154032980 Michael Snyder, Stanford 578f221f3e31cd32a9718482e5b4e7ef SRA:SRR5111311 https://www.encodeproject.org/files/ENCFF766EXH/@@download/ENCFF766EXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF023XZI/ released ENCFF859KHK fastq reads ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 1 ENCFF341BBR 4902904831 Michael Snyder, Stanford 11ad1fdaefd03c0973f1969f1850486b SRA:SRR5111312 https://www.encodeproject.org/files/ENCFF859KHK/@@download/ENCFF859KHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF005OJL/ released ENCFF341BBR fastq reads ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 1 100 paired-ended 2 ENCFF859KHK 4959091210 Michael Snyder, Stanford c466444cd9fb3375dfad4a3224ac6636 SRA:SRR5111312 https://www.encodeproject.org/files/ENCFF341BBR/@@download/ENCFF341BBR.fastq.gz Illumina HiSeq 2000 /files/ENCFF862EKZ/ released ENCFF426LPR bam unfiltered alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF145TGH, ENCFF766EXH, ENCFF807MUK 8292581051 ENCODE Processing Pipeline a1d31cf2779978a625a61e43291aafd0 https://www.encodeproject.org/files/ENCFF426LPR/@@download/ENCFF426LPR.bam hg19 released ENCFF267ZUO bam unfiltered alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF341BBR, ENCFF807MUK, ENCFF859KHK 9666623273 ENCODE Processing Pipeline 3acf40cd971fd1a891dbd09ce27a2100 https://www.encodeproject.org/files/ENCFF267ZUO/@@download/ENCFF267ZUO.bam hg19 released ENCFF255FOB bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF145TGH, ENCFF766EXH, ENCFF807MUK 6665060850 ENCODE Processing Pipeline ad20cf85ea797bfaeaa34ad9ad6c503a https://www.encodeproject.org/files/ENCFF255FOB/@@download/ENCFF255FOB.bam hg19 released ENCFF274MHJ bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF341BBR, ENCFF807MUK, ENCFF859KHK 7856628742 ENCODE Processing Pipeline 903c5c7e04463ab8dae59668f3095d57 https://www.encodeproject.org/files/ENCFF274MHJ/@@download/ENCFF274MHJ.bam hg19 released ENCFF125IYY bam unfiltered alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF145TGH, ENCFF643CGH, ENCFF766EXH 8303070612 ENCODE Processing Pipeline 1db60e76a2e095f0137c1723bc7959e8 https://www.encodeproject.org/files/ENCFF125IYY/@@download/ENCFF125IYY.bam GRCh38 released ENCFF934PHO bam unfiltered alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF341BBR, ENCFF643CGH, ENCFF859KHK 9676728408 ENCODE Processing Pipeline 45ffcec526e6ccfd3578cf50b428fc04 https://www.encodeproject.org/files/ENCFF934PHO/@@download/ENCFF934PHO.bam GRCh38 released ENCFF995ZRC bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF145TGH, ENCFF643CGH, ENCFF766EXH 6672973207 ENCODE Processing Pipeline 037e7e0591c3aff489493806d45d19f3 https://www.encodeproject.org/files/ENCFF995ZRC/@@download/ENCFF995ZRC.bam GRCh38 released ENCFF364TGY bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF341BBR, ENCFF643CGH, ENCFF859KHK 7865496416 ENCODE Processing Pipeline d8f842d806d85e27531bf47557905e04 https://www.encodeproject.org/files/ENCFF364TGY/@@download/ENCFF364TGY.bam GRCh38 released ENCFF086YPN bigWig signal p-value ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF364TGY 1345861488 ENCODE Processing Pipeline e4820e57d2cbdc80aba7facb33b92ff9 https://www.encodeproject.org/files/ENCFF086YPN/@@download/ENCFF086YPN.bigWig GRCh38 released ENCFF599CJW bigWig signal p-value ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF995ZRC 1463293431 ENCODE Processing Pipeline fbdb0d0eb2bdc4da94268db75f93dee2 https://www.encodeproject.org/files/ENCFF599CJW/@@download/ENCFF599CJW.bigWig GRCh38 released ENCFF904ZKO bigWig signal p-value ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF364TGY, ENCFF488RJA, ENCFF995ZRC 2220201331 ENCODE Processing Pipeline 2e3ddae8ddc96ec95984222cee3e4ab8 https://www.encodeproject.org/files/ENCFF904ZKO/@@download/ENCFF904ZKO.bigWig GRCh38 released ENCFF909XHP bigWig fold change over control ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF995ZRC 1752594042 ENCODE Processing Pipeline 3843ed7767345bdfb0325225afb8fcd1 https://www.encodeproject.org/files/ENCFF909XHP/@@download/ENCFF909XHP.bigWig GRCh38 released ENCFF586NET bigWig fold change over control ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF364TGY 1489166306 ENCODE Processing Pipeline 775f0b0cc846e845b2e903ece6ff21d9 https://www.encodeproject.org/files/ENCFF586NET/@@download/ENCFF586NET.bigWig GRCh38 released ENCFF051PPP bigWig fold change over control ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF364TGY, ENCFF488RJA, ENCFF995ZRC 2417838140 ENCODE Processing Pipeline 467f2c0d858f6fc03d1bdad68765fc5f https://www.encodeproject.org/files/ENCFF051PPP/@@download/ENCFF051PPP.bigWig GRCh38 released ENCFF002JYV bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF290DLX, ENCFF488RJA, ENCFF995ZRC 6933539 ENCODE Processing Pipeline 754e91448ddfa26bdeba04546b47dd97 https://www.encodeproject.org/files/ENCFF002JYV/@@download/ENCFF002JYV.bed.gz GRCh38 released ENCFF885JSK bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF290DLX, ENCFF364TGY 6871044 ENCODE Processing Pipeline 25f1e9a95eba343c54dff0cfdd5631f9 https://www.encodeproject.org/files/ENCFF885JSK/@@download/ENCFF885JSK.bed.gz GRCh38 released ENCFF697FMO bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF290DLX, ENCFF364TGY, ENCFF488RJA, ENCFF995ZRC 7230027 ENCODE Processing Pipeline 72b24d57cd97944db1297f166f197a23 https://www.encodeproject.org/files/ENCFF697FMO/@@download/ENCFF697FMO.bed.gz GRCh38 released ENCFF654LDJ bigBed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF002JYV 11532474 ENCODE Processing Pipeline a38fd7ee877c94d1f3275d25475a890f https://www.encodeproject.org/files/ENCFF654LDJ/@@download/ENCFF654LDJ.bigBed GRCh38 released ENCFF050YKM bigBed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF885JSK 11416515 ENCODE Processing Pipeline c54b326bf4b06210d0956c8c82c5b241 https://www.encodeproject.org/files/ENCFF050YKM/@@download/ENCFF050YKM.bigBed GRCh38 released ENCFF145TZB bigBed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF697FMO 11581594 ENCODE Processing Pipeline 17483aa5b575b2b818b243204ac26ed2 https://www.encodeproject.org/files/ENCFF145TZB/@@download/ENCFF145TZB.bigBed GRCh38 released ENCFF128CQA bed narrowPeak conservative idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF002JYV, ENCFF419RSJ, ENCFF697FMO, ENCFF885JSK 679400 ENCODE Processing Pipeline dfb0892f23ec1e593eab0d52f868ec5c https://www.encodeproject.org/files/ENCFF128CQA/@@download/ENCFF128CQA.bed.gz GRCh38 released ENCFF258MSW bigBed narrowPeak conservative idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF128CQA 1156665 ENCODE Processing Pipeline 7842738f504f307c68e9b23012fa693d https://www.encodeproject.org/files/ENCFF258MSW/@@download/ENCFF258MSW.bigBed GRCh38 released ENCFF234WZT bed narrowPeak optimal idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF002JYV, ENCFF419RSJ, ENCFF697FMO, ENCFF885JSK 824607 ENCODE Processing Pipeline 00f66a83e46ac4d22290d728172d6096 https://www.encodeproject.org/files/ENCFF234WZT/@@download/ENCFF234WZT.bed.gz GRCh38 released ENCFF659VBD bigBed narrowPeak optimal idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF234WZT 1698970 ENCODE Processing Pipeline e38b9d945ce7ed8c00a3a3883b06fee4 https://www.encodeproject.org/files/ENCFF659VBD/@@download/ENCFF659VBD.bigBed GRCh38 released ENCFF932DAO bigWig signal p-value ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF255FOB, ENCFF760DHW 1485427437 ENCODE Processing Pipeline d08e7bf056c87578ac2a818b9d743d1c https://www.encodeproject.org/files/ENCFF932DAO/@@download/ENCFF932DAO.bigWig hg19 released ENCFF843OXW bigWig signal p-value ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF274MHJ, ENCFF760DHW 1344009985 ENCODE Processing Pipeline 73c971a6606728fb7b919350bca1bdd0 https://www.encodeproject.org/files/ENCFF843OXW/@@download/ENCFF843OXW.bigWig hg19 released ENCFF823KUF bigWig signal p-value ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF255FOB, ENCFF274MHJ, ENCFF760DHW 2205576149 ENCODE Processing Pipeline c8fabe434b3fec68c05a6e1703367911 https://www.encodeproject.org/files/ENCFF823KUF/@@download/ENCFF823KUF.bigWig hg19 released ENCFF348QER bigWig fold change over control ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF255FOB, ENCFF760DHW 1749924590 ENCODE Processing Pipeline 58118faa76c5803501284db943e1abf1 https://www.encodeproject.org/files/ENCFF348QER/@@download/ENCFF348QER.bigWig hg19 released ENCFF472IPM bigWig fold change over control ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF274MHJ, ENCFF760DHW 1487002436 ENCODE Processing Pipeline c25d35303fe6d107b626accd695df89e https://www.encodeproject.org/files/ENCFF472IPM/@@download/ENCFF472IPM.bigWig hg19 released ENCFF038HWD bigWig fold change over control ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF255FOB, ENCFF274MHJ, ENCFF760DHW 2402827165 ENCODE Processing Pipeline c6df6fa8e7dd149c82b297f374e3557c https://www.encodeproject.org/files/ENCFF038HWD/@@download/ENCFF038HWD.bigWig hg19 released ENCFF667IBC bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF255FOB, ENCFF760DHW 6941686 ENCODE Processing Pipeline 6604b384938ac22340c895fcb8df7079 https://www.encodeproject.org/files/ENCFF667IBC/@@download/ENCFF667IBC.bed.gz hg19 released ENCFF331WKY bed narrowPeak optimal idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF025FXN, ENCFF667IBC, ENCFF914KNX 838373 ENCODE Processing Pipeline d70bc76d79b6ddbf1d6f1726763db070 https://www.encodeproject.org/files/ENCFF331WKY/@@download/ENCFF331WKY.bed.gz hg19 released ENCFF833RKT bigBed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF667IBC 11535107 ENCODE Processing Pipeline bb7a3265dfce0e96b2856bb11d38b596 https://www.encodeproject.org/files/ENCFF833RKT/@@download/ENCFF833RKT.bigBed hg19 released ENCFF173UEW bed narrowPeak conservative idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF001TDO, ENCFF025FXN, ENCFF667IBC, ENCFF914KNX 688774 ENCODE Processing Pipeline 402b314ea579ccea4062010b5b008c57 https://www.encodeproject.org/files/ENCFF173UEW/@@download/ENCFF173UEW.bed.gz hg19 released ENCFF898CDK bigBed narrowPeak optimal idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF331WKY 1718226 ENCODE Processing Pipeline d64be1aaf3bb6c3fee6d425935067918 https://www.encodeproject.org/files/ENCFF898CDK/@@download/ENCFF898CDK.bigBed hg19 released ENCFF025FXN bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF274MHJ, ENCFF760DHW 6928011 ENCODE Processing Pipeline cd1a93e3903f5c2580ee2aed69176ac5 https://www.encodeproject.org/files/ENCFF025FXN/@@download/ENCFF025FXN.bed.gz hg19 released ENCFF197JGG bigBed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF914KNX 11601041 ENCODE Processing Pipeline 019c26abd38af6e896eef358407f58bb https://www.encodeproject.org/files/ENCFF197JGG/@@download/ENCFF197JGG.bigBed hg19 released ENCFF248SKT bigBed narrowPeak conservative idr thresholded peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF173UEW 1478244 ENCODE Processing Pipeline 0bffc0e52de8ddfa1b202443a9027506 https://www.encodeproject.org/files/ENCFF248SKT/@@download/ENCFF248SKT.bigBed hg19 released ENCFF914KNX bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1, 2 ENCFF040GAR, ENCFF255FOB, ENCFF274MHJ, ENCFF760DHW 7252751 ENCODE Processing Pipeline 01c6515b5139e4bd2755cb2fd6eb349a https://www.encodeproject.org/files/ENCFF914KNX/@@download/ENCFF914KNX.bed.gz hg19 released ENCFF159PQI bigBed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF025FXN 11477588 ENCODE Processing Pipeline 2e695592fcdf75c970e18eb8ad8519d5 https://www.encodeproject.org/files/ENCFF159PQI/@@download/ENCFF159PQI.bigBed hg19 released ENCFF000VYR bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 1 442582835 Michael Snyder, Stanford 8c17c80a378815ea05c0a73de69df08f https://www.encodeproject.org/files/ENCFF000VYR/@@download/ENCFF000VYR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF000VYS bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE ENCFF001VER 2455379 Michael Snyder, Stanford 76133c9a6031e1fb5f888fe945b901fd https://www.encodeproject.org/files/ENCFF000VYS/@@download/ENCFF000VYS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF000VYT fastq reads ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 1 36 single-ended 785027702 Michael Snyder, Stanford b98d8bae0103314e5c1035f6d8cd9337 https://www.encodeproject.org/files/ENCFF000VYT/@@download/ENCFF000VYT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWD/ released inconsistent target of control experiment, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth, inconsistent control read length ENCFF000VYV fastq reads ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 1 36 single-ended 1508063156 Michael Snyder, Stanford 6c5e675de71263e86644e9a2e353c3aa https://www.encodeproject.org/files/ENCFF000VYV/@@download/ENCFF000VYV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000VWK/ released inconsistent target of control experiment, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth, inconsistent control read length ENCFF000VYX bigWig signal ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 417115959 Michael Snyder, Stanford 0b1cfff596cc5313ff65f2450038b142 https://www.encodeproject.org/files/ENCFF000VYX/@@download/ENCFF000VYX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF000VYY bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 1 676608455 Michael Snyder, Stanford 214cf1a9dfced6421b60c56334e5e5f9 https://www.encodeproject.org/files/ENCFF000VYY/@@download/ENCFF000VYY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF001VER bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1002998 Michael Snyder, Stanford bd0d6c9e0d56a1b8a0e1d4b64264e724 https://www.encodeproject.org/files/ENCFF001VER/@@download/ENCFF001VER.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF002COY bed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 455182 ENCODE Consortium Analysis Working Group 95b92577da32551f9fd9cf9815f0c2db https://www.encodeproject.org/files/ENCFF002COY/@@download/ENCFF002COY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment missing derived_from ENCFF348KWG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE ENCFF002COY 1094038 ENCODE Consortium 05aaa29ab43c0a3d48e276d270c18425 https://www.encodeproject.org/files/ENCFF348KWG/@@download/ENCFF348KWG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF056TXR bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF643CGH 836508692 ENCODE Processing Pipeline 68e818709c2220ecda382a08c19a6c71 https://www.encodeproject.org/files/ENCFF056TXR/@@download/ENCFF056TXR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF707VJV bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF643CGH 1469282525 ENCODE Processing Pipeline 6d5fa934dba8102cd64f2c816615d8e9 https://www.encodeproject.org/files/ENCFF707VJV/@@download/ENCFF707VJV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF377YXP bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF643CGH 546985881 ENCODE Processing Pipeline 64687a899b5ccec376e660db9b185b95 https://www.encodeproject.org/files/ENCFF377YXP/@@download/ENCFF377YXP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF169JOK bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF643CGH 863716625 ENCODE Processing Pipeline 6745d10dd6906d628e012d20ad875700 https://www.encodeproject.org/files/ENCFF169JOK/@@download/ENCFF169JOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF305VDY bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF807MUK 833091801 ENCODE Processing Pipeline 96c1e40e04c93ba5e49480db67f28ca9 https://www.encodeproject.org/files/ENCFF305VDY/@@download/ENCFF305VDY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF128IWG bam unfiltered alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF807MUK 1463735702 ENCODE Processing Pipeline 2e0a6d0f9ee17800b1024933da87866c https://www.encodeproject.org/files/ENCFF128IWG/@@download/ENCFF128IWG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF387QOE bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF807MUK 546803975 ENCODE Processing Pipeline bc89c87588aea2505e84a9ab9bb02e09 https://www.encodeproject.org/files/ENCFF387QOE/@@download/ENCFF387QOE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF287GWT bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF807MUK 862966913 ENCODE Processing Pipeline 17e60a696c80d42940156a230af14c4c https://www.encodeproject.org/files/ENCFF287GWT/@@download/ENCFF287GWT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF776GTW bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 4553274 ENCODE Processing Pipeline 5169acff0ca163969d36b2a38025f5ab https://www.encodeproject.org/files/ENCFF776GTW/@@download/ENCFF776GTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF160GED bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 75517175 ENCODE Processing Pipeline b6587dc5585e3139c275a464356a3cf1 https://www.encodeproject.org/files/ENCFF160GED/@@download/ENCFF160GED.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF840ZJM bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF287GWT, ENCFF387QOE, ENCFF545DZO 524744476 ENCODE Processing Pipeline 3fbb7f4223b3232424720664d8ae46e7 https://www.encodeproject.org/files/ENCFF840ZJM/@@download/ENCFF840ZJM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF704CGT bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF603MKX 13142502 ENCODE Processing Pipeline e122c4f3fbf40c9355ef6b482916e542 https://www.encodeproject.org/files/ENCFF704CGT/@@download/ENCFF704CGT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF861YUL bed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF603MKX, ENCFF711VHK, ENCFF776GTW 324464 ENCODE Processing Pipeline 756f355b738795e346faec1ef0cc8ac2 https://www.encodeproject.org/files/ENCFF861YUL/@@download/ENCFF861YUL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF603MKX bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF287GWT, ENCFF387QOE, ENCFF545DZO 5242937 ENCODE Processing Pipeline 8743988b09847ce263fade36136696c9 https://www.encodeproject.org/files/ENCFF603MKX/@@download/ENCFF603MKX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF651XZU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF861YUL 656354 ENCODE Processing Pipeline 8065570dd4ae9c9f2a01764665b48d7d https://www.encodeproject.org/files/ENCFF651XZU/@@download/ENCFF651XZU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF346YHE bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 169113899 ENCODE Processing Pipeline a58a4404958953275e473dd2920c100f https://www.encodeproject.org/files/ENCFF346YHE/@@download/ENCFF346YHE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF673PVX bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 246313046 ENCODE Processing Pipeline a8ff50a3a59d907ae0a05da62282b4e4 https://www.encodeproject.org/files/ENCFF673PVX/@@download/ENCFF673PVX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF308XOG bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF287GWT, ENCFF387QOE, ENCFF545DZO 158726788 ENCODE Processing Pipeline d222e7f6e97cfe2013251989fc096d23 https://www.encodeproject.org/files/ENCFF308XOG/@@download/ENCFF308XOG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF994AHP bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 293314547 ENCODE Processing Pipeline 6f700158df974bb055306c40862dc853 https://www.encodeproject.org/files/ENCFF994AHP/@@download/ENCFF994AHP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF711VHK bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 4587819 ENCODE Processing Pipeline c85d0aa485fd67cd66b762d7c70136fa https://www.encodeproject.org/files/ENCFF711VHK/@@download/ENCFF711VHK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF185RQE bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF711VHK 10396509 ENCODE Processing Pipeline 9181535c57e6f1c245136e7042a9104c https://www.encodeproject.org/files/ENCFF185RQE/@@download/ENCFF185RQE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF751HMO bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF776GTW 10652137 ENCODE Processing Pipeline c8c111a46b7fe62f7fd486d7c0f5959c https://www.encodeproject.org/files/ENCFF751HMO/@@download/ENCFF751HMO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF446WBQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF079ZWK 951762 ENCODE Processing Pipeline b2f413937d140b55276480465f325bcf https://www.encodeproject.org/files/ENCFF446WBQ/@@download/ENCFF446WBQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF079ZWK bed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF603MKX, ENCFF711VHK, ENCFF776GTW 418493 ENCODE Processing Pipeline 6cacbee975f59501030c8b8587227808 https://www.encodeproject.org/files/ENCFF079ZWK/@@download/ENCFF079ZWK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF978JRC bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF169JOK, ENCFF477ZKJ 75469671 ENCODE Processing Pipeline 4f5bb6c3261db27d10e82cb3f9d3026f https://www.encodeproject.org/files/ENCFF978JRC/@@download/ENCFF978JRC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF279ADX bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF169JOK, ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 157896794 ENCODE Processing Pipeline 587b9e7b986a06dbb84a6514258e7889 https://www.encodeproject.org/files/ENCFF279ADX/@@download/ENCFF279ADX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF868DOL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF380XEC 654698 ENCODE Processing Pipeline 703bc01035fbbd7c1e3780d73749b5d7 https://www.encodeproject.org/files/ENCFF868DOL/@@download/ENCFF868DOL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF054BLU bigWig signal p-value ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 169135804 ENCODE Processing Pipeline 0186622d1ac6f4058a8b05856f7560e1 https://www.encodeproject.org/files/ENCFF054BLU/@@download/ENCFF054BLU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF988OXK bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF169JOK, ENCFF477ZKJ 292248676 ENCODE Processing Pipeline 6427cf690d648b11bc920c5eba41ff4c https://www.encodeproject.org/files/ENCFF988OXK/@@download/ENCFF988OXK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF482UOW bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF169JOK, ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 521903940 ENCODE Processing Pipeline 6f252526971a58b0ffe92d109fa1245f https://www.encodeproject.org/files/ENCFF482UOW/@@download/ENCFF482UOW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF939WFC bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 4407395 ENCODE Processing Pipeline 904460e9677a85ca9388788708804bae https://www.encodeproject.org/files/ENCFF939WFC/@@download/ENCFF939WFC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF040XAI bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF169JOK, ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 5236138 ENCODE Processing Pipeline 8e259643a3537e00c6d2caa4acd68691 https://www.encodeproject.org/files/ENCFF040XAI/@@download/ENCFF040XAI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF968DNA bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF134IKR 10653752 ENCODE Processing Pipeline 2cac61e000bcc5c5783016e4daaf7ca3 https://www.encodeproject.org/files/ENCFF968DNA/@@download/ENCFF968DNA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF199HGX bed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF040XAI, ENCFF134IKR, ENCFF419RSJ, ENCFF939WFC 418561 ENCODE Processing Pipeline dc24747ebafc9f82aa0c594836157431 https://www.encodeproject.org/files/ENCFF199HGX/@@download/ENCFF199HGX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF941ZQX bigWig fold change over control ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF377YXP, ENCFF477ZKJ, ENCFF710SMS 246673883 ENCODE Processing Pipeline 3c435bd7df6e8caeb60a57a31fa73212 https://www.encodeproject.org/files/ENCFF941ZQX/@@download/ENCFF941ZQX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF134IKR bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF169JOK, ENCFF477ZKJ 4554328 ENCODE Processing Pipeline 2ddc4d0bcb386a2ddd25af0893194e2f https://www.encodeproject.org/files/ENCFF134IKR/@@download/ENCFF134IKR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF380XEC bed narrowPeak conservative idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF040XAI, ENCFF134IKR, ENCFF419RSJ, ENCFF939WFC 323170 ENCODE Processing Pipeline 285284d067a9fa84f6ec7d69609aad33 https://www.encodeproject.org/files/ENCFF380XEC/@@download/ENCFF380XEC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF264NLR bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF939WFC 10177043 ENCODE Processing Pipeline 59dd14fe4de9d1107fa66e979ae1544f https://www.encodeproject.org/files/ENCFF264NLR/@@download/ENCFF264NLR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF964UQQ bigBed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF040XAI 13139489 ENCODE Processing Pipeline e4a4f4718401fb801d31b63323720fe9 https://www.encodeproject.org/files/ENCFF964UQQ/@@download/ENCFF964UQQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF439UHS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1, 2 ENCFF199HGX 951348 ENCODE Processing Pipeline 3efc8acd79f2d596c07db9406acd95eb https://www.encodeproject.org/files/ENCFF439UHS/@@download/ENCFF439UHS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF000NXU bigBed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXQ 1167589 Richard Myers, HAIB 8c504fde2a46648368334f8ec1a18206 https://www.encodeproject.org/files/ENCFF000NXU/@@download/ENCFF000NXU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000NXV bigBed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXR 514330 Richard Myers, HAIB e383556a449513de50ca719bbc4f0dac https://www.encodeproject.org/files/ENCFF000NXV/@@download/ENCFF000NXV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000NXX bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NYH 1344274115 Richard Myers, HAIB b93c5562a0003c243b12f24931f39a0c https://www.encodeproject.org/files/ENCFF000NXX/@@download/ENCFF000NXX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000NXY bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NYJ 1109705455 Richard Myers, HAIB c1a6a32546e91353bb6a9e8a87fe8c22 https://www.encodeproject.org/files/ENCFF000NXY/@@download/ENCFF000NXY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000NXZ bigWig raw signal ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 49013415 Richard Myers, HAIB 97226b08836caad5ca589fc01ec1b4e9 https://www.encodeproject.org/files/ENCFF000NXZ/@@download/ENCFF000NXZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000NYA bigWig raw signal ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 22959401 Richard Myers, HAIB 4cd1c52da61578475888667af6bdaf05 https://www.encodeproject.org/files/ENCFF000NYA/@@download/ENCFF000NYA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000NYH fastq reads ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1355323085 Richard Myers, HAIB 171808fc7101394bf88c7bcdab75afe2 https://www.encodeproject.org/files/ENCFF000NYH/@@download/ENCFF000NYH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000NYJ fastq reads ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1114007550 Richard Myers, HAIB f202c66e4d37eb4d127adfb0e9a5b122 https://www.encodeproject.org/files/ENCFF000NYJ/@@download/ENCFF000NYJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF001TXQ bed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 1 712158 Richard Myers, HAIB b78104558c7fba920533144a3277e9f7 https://www.encodeproject.org/files/ENCFF001TXQ/@@download/ENCFF001TXQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001TXR bed broadPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 1 323300 Richard Myers, HAIB 9cb04a083f8ab6c7715d3ad5081eb1a0 https://www.encodeproject.org/files/ENCFF001TXR/@@download/ENCFF001TXR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CHG bed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 608424 ENCODE Consortium Analysis Working Group b8df4bad5bad9f8745dfe10c49735213 https://www.encodeproject.org/files/ENCFF002CHG/@@download/ENCFF002CHG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF987FTR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHG 1405898 ENCODE Consortium c041bf48c0fac52e24f8bc05a0c17765 https://www.encodeproject.org/files/ENCFF987FTR/@@download/ENCFF987FTR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF512SGQ bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF643CGH 1179740104 ENCODE Processing Pipeline 278a980d8c2e88c0bb188d27d4ff8b71 https://www.encodeproject.org/files/ENCFF512SGQ/@@download/ENCFF512SGQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF261PTK bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF643CGH 675205759 ENCODE Processing Pipeline 7e569bbf7a4cd3fd41c5667dabe68a4f https://www.encodeproject.org/files/ENCFF261PTK/@@download/ENCFF261PTK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF377QYQ bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF643CGH 1452858802 ENCODE Processing Pipeline 6ddc6a05369289bc68bf031d15098c2f https://www.encodeproject.org/files/ENCFF377QYQ/@@download/ENCFF377QYQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF838XZA bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF643CGH 808765999 ENCODE Processing Pipeline 28ef492d202566e22ae62ed0fa6c40b9 https://www.encodeproject.org/files/ENCFF838XZA/@@download/ENCFF838XZA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF219MMF bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF807MUK 1178403357 ENCODE Processing Pipeline c14031e60e131ecf07b24f89c51ac462 https://www.encodeproject.org/files/ENCFF219MMF/@@download/ENCFF219MMF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF617HLC bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF807MUK 669300965 ENCODE Processing Pipeline c142a6b687b30b71c766bef10c1a6c71 https://www.encodeproject.org/files/ENCFF617HLC/@@download/ENCFF617HLC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF041PWP bam unfiltered alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF807MUK 1450675432 ENCODE Processing Pipeline caa573f2bd0f82dff5bfc4c3a661f0f9 https://www.encodeproject.org/files/ENCFF041PWP/@@download/ENCFF041PWP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF930KIJ bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF807MUK 802797569 ENCODE Processing Pipeline d8ee1d883fa258a566b0e474ef40b1a3 https://www.encodeproject.org/files/ENCFF930KIJ/@@download/ENCFF930KIJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF363OIP bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF838XZA 576939838 ENCODE Processing Pipeline db24978c673c54b8135dfcd386915f63 https://www.encodeproject.org/files/ENCFF363OIP/@@download/ENCFF363OIP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF572LIQ bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF838XZA 459992186 ENCODE Processing Pipeline 8b0e934117e81748bc884ed66155cc79 https://www.encodeproject.org/files/ENCFF572LIQ/@@download/ENCFF572LIQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF985ZWZ bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF790YIS 12930877 ENCODE Processing Pipeline d13ca1bbe74bdebf6eee07486cc564fa https://www.encodeproject.org/files/ENCFF985ZWZ/@@download/ENCFF985ZWZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF184AGP bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF261PTK, ENCFF537DAJ, ENCFF838XZA 828934832 ENCODE Processing Pipeline 7d4384ce9dec77750f5a63f79daae2ab https://www.encodeproject.org/files/ENCFF184AGP/@@download/ENCFF184AGP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF196QMQ bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF537DAJ, ENCFF838XZA 6831187 ENCODE Processing Pipeline f60d9827a245929fac12837869cd7726 https://www.encodeproject.org/files/ENCFF196QMQ/@@download/ENCFF196QMQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF830EBQ bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF261PTK, ENCFF537DAJ, ENCFF838XZA 6981320 ENCODE Processing Pipeline 2325199fad8acb7dc70471c5d62521ba https://www.encodeproject.org/files/ENCFF830EBQ/@@download/ENCFF830EBQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF646JVP bed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF196QMQ, ENCFF419RSJ, ENCFF790YIS, ENCFF830EBQ 552690 ENCODE Processing Pipeline f325e7b649e35e6758d56fc0217ded02 https://www.encodeproject.org/files/ENCFF646JVP/@@download/ENCFF646JVP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF376ITC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF646JVP 1229162 ENCODE Processing Pipeline 94949cafb55e9daf5f76c726dead63d1 https://www.encodeproject.org/files/ENCFF376ITC/@@download/ENCFF376ITC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF191FOS bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261PTK, ENCFF537DAJ 441901058 ENCODE Processing Pipeline 4c4634d3abbe0f7966bcada754b11f7c https://www.encodeproject.org/files/ENCFF191FOS/@@download/ENCFF191FOS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF388KAP bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF261PTK, ENCFF537DAJ, ENCFF838XZA 721754804 ENCODE Processing Pipeline dc70e14f076ba0b5a2358cecbdb8acbf https://www.encodeproject.org/files/ENCFF388KAP/@@download/ENCFF388KAP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF974GZJ bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261PTK, ENCFF537DAJ 504167814 ENCODE Processing Pipeline 5179d344998b9ce34ca2b879583dd2d0 https://www.encodeproject.org/files/ENCFF974GZJ/@@download/ENCFF974GZJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF941CTI bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF196QMQ 12688845 ENCODE Processing Pipeline fe08b25892f767b1d2daf84d60bbd8e2 https://www.encodeproject.org/files/ENCFF941CTI/@@download/ENCFF941CTI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF819MMG bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF830EBQ 12657780 ENCODE Processing Pipeline b57d3cd098fc68775412a2351bff0d4c https://www.encodeproject.org/files/ENCFF819MMG/@@download/ENCFF819MMG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF480WDX bed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF196QMQ, ENCFF419RSJ, ENCFF790YIS, ENCFF830EBQ 669412 ENCODE Processing Pipeline becbcfef50d627dc9fb4a9bbf5c8a890 https://www.encodeproject.org/files/ENCFF480WDX/@@download/ENCFF480WDX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF074ZXN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF480WDX 1436563 ENCODE Processing Pipeline b7351f41395c50c3b832cd8335113565 https://www.encodeproject.org/files/ENCFF074ZXN/@@download/ENCFF074ZXN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF790YIS bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF261PTK, ENCFF537DAJ 6363409 ENCODE Processing Pipeline 27cf39f20b496402c93629cb0ed10c42 https://www.encodeproject.org/files/ENCFF790YIS/@@download/ENCFF790YIS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF559GVL bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 448013018 ENCODE Processing Pipeline d4d35a3455a086d6cc4e9828acd0d03b https://www.encodeproject.org/files/ENCFF559GVL/@@download/ENCFF559GVL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF676IPZ bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 612392548 ENCODE Processing Pipeline 8f87e05574f77a855dbbade9a8605810 https://www.encodeproject.org/files/ENCFF676IPZ/@@download/ENCFF676IPZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF669FMA bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 574008239 ENCODE Processing Pipeline c427cbac3d7b7d99959be5882150dad1 https://www.encodeproject.org/files/ENCFF669FMA/@@download/ENCFF669FMA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF197OZH bigWig signal p-value ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF508HCX, ENCFF617HLC, ENCFF930KIJ 752732983 ENCODE Processing Pipeline 86e006177477509ecdfc9194663c0752 https://www.encodeproject.org/files/ENCFF197OZH/@@download/ENCFF197OZH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF574ATX bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 453802498 ENCODE Processing Pipeline a443c6dcceab594abf40ae288abe5e19 https://www.encodeproject.org/files/ENCFF574ATX/@@download/ENCFF574ATX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF996TKN bigWig fold change over control ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF508HCX, ENCFF617HLC, ENCFF930KIJ 720805882 ENCODE Processing Pipeline 24e31600c2d1ec12ab09f6022c2fbcd3 https://www.encodeproject.org/files/ENCFF996TKN/@@download/ENCFF996TKN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF729EFK bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF508HCX, ENCFF617HLC, ENCFF930KIJ 6856843 ENCODE Processing Pipeline 5a08f73adafc396d36ff42aa76addf1b https://www.encodeproject.org/files/ENCFF729EFK/@@download/ENCFF729EFK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF806NEN bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 6261010 ENCODE Processing Pipeline b12b3a898aaae73f6bae267d89c05c62 https://www.encodeproject.org/files/ENCFF806NEN/@@download/ENCFF806NEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF019FNI bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 6488664 ENCODE Processing Pipeline f4ce1c0a9218c31ee5091bc8bf3803fc https://www.encodeproject.org/files/ENCFF019FNI/@@download/ENCFF019FNI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF087BVG bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF729EFK 12565587 ENCODE Processing Pipeline 4709571d8ed1113d56dea248b669eca3 https://www.encodeproject.org/files/ENCFF087BVG/@@download/ENCFF087BVG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF598MIG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF269LZJ 1012457 ENCODE Processing Pipeline 7b1de4935c051b1bbd2bd01ecd55a50d https://www.encodeproject.org/files/ENCFF598MIG/@@download/ENCFF598MIG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF628QJU bed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF019FNI, ENCFF729EFK, ENCFF806NEN 640810 ENCODE Processing Pipeline dc9ce027a41e9f4547f9aa222c71c62c https://www.encodeproject.org/files/ENCFF628QJU/@@download/ENCFF628QJU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF027YFF bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF019FNI 12282263 ENCODE Processing Pipeline 1dc1f26e5fbc8d2c6442a5cb1da4e15a https://www.encodeproject.org/files/ENCFF027YFF/@@download/ENCFF027YFF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF787RNR bigBed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF806NEN 12901994 ENCODE Processing Pipeline e891b219ed4c73b0826c9f3ce42e6722 https://www.encodeproject.org/files/ENCFF787RNR/@@download/ENCFF787RNR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF269LZJ bed narrowPeak conservative idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF019FNI, ENCFF729EFK, ENCFF806NEN 534232 ENCODE Processing Pipeline 03f7a9c0cdd336f6c026fe75009d6e61 https://www.encodeproject.org/files/ENCFF269LZJ/@@download/ENCFF269LZJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF270NLN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF628QJU 1161707 ENCODE Processing Pipeline a280712855ecd441c5a0545fe0c8d592 https://www.encodeproject.org/files/ENCFF270NLN/@@download/ENCFF270NLN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000OXY bam alignments ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYG 1047315206 Richard Myers, HAIB 7fc2adadbb4bf70430692379c1f1458f https://www.encodeproject.org/files/ENCFF000OXY/@@download/ENCFF000OXY.bam hg19 released biological replicates with identical biosample ENCFF000OXZ bigBed broadPeak peaks ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDM 163431 Richard Myers, HAIB c06a1e03e9df08f97147d53d71f7c604 https://www.encodeproject.org/files/ENCFF000OXZ/@@download/ENCFF000OXZ.bigBed hg19 released biological replicates with identical biosample ENCFF000OYA bigBed broadPeak peaks ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDN 343754 Richard Myers, HAIB 6c10cc83603964a72293f7f0f4d784a2 https://www.encodeproject.org/files/ENCFF000OYA/@@download/ENCFF000OYA.bigBed hg19 released biological replicates with identical biosample ENCFF000OYB bam alignments ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OYN 1958945810 Richard Myers, HAIB fcbd818e259b9abaf9a8cbbc7b45b65f https://www.encodeproject.org/files/ENCFF000OYB/@@download/ENCFF000OYB.bam hg19 released biological replicates with identical biosample ENCFF000OYC bigWig raw signal ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 115316359 Richard Myers, HAIB 6b570e45bc9d8f8e4071172183a3fa4d https://www.encodeproject.org/files/ENCFF000OYC/@@download/ENCFF000OYC.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000OYE bigWig raw signal ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 255121991 Richard Myers, HAIB e0e7d1d19bee4c7b61c26fb43350aa88 https://www.encodeproject.org/files/ENCFF000OYE/@@download/ENCFF000OYE.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OYG fastq reads ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1096433352 Richard Myers, HAIB 0e540470687e181c1d562aa28e8e161f https://www.encodeproject.org/files/ENCFF000OYG/@@download/ENCFF000OYG.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000OYN fastq reads ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2038335959 Richard Myers, HAIB cea4ce66e699cc76b8417cd6fbe978cf https://www.encodeproject.org/files/ENCFF000OYN/@@download/ENCFF000OYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UDM bed broadPeak peaks ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 74273 Richard Myers, HAIB f1d8f23563ee2e07e7fe47cd5311d52c https://www.encodeproject.org/files/ENCFF001UDM/@@download/ENCFF001UDM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UDN bed broadPeak peaks ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 160701 Richard Myers, HAIB bbab60776ef5ecb1c2c41e3d86110204 https://www.encodeproject.org/files/ENCFF001UDN/@@download/ENCFF001UDN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XYF bam alignments ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYM 98511613 Sherman Weissman, Yale 172e03555b0e089dc89941181f458527 https://www.encodeproject.org/files/ENCFF000XYF/@@download/ENCFF000XYF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XYG bigBed narrowPeak peaks ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLB 19761 Sherman Weissman, Yale b2cebff031b39d46357303d9fd420843 https://www.encodeproject.org/files/ENCFF000XYG/@@download/ENCFF000XYG.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XYH bam alignments ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYN 160923058 Sherman Weissman, Yale 72ec3f3a772da25af775902e0f6602e5 https://www.encodeproject.org/files/ENCFF000XYH/@@download/ENCFF000XYH.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XYI bigWig signal ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 315129061 Sherman Weissman, Yale 282e7f2ef44ef8935a7ba93706855325 https://www.encodeproject.org/files/ENCFF000XYI/@@download/ENCFF000XYI.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XYJ bam alignments ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XYS 201925494 Sherman Weissman, Yale c6ffd593a755ff4c667ed2de9addac33 https://www.encodeproject.org/files/ENCFF000XYJ/@@download/ENCFF000XYJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XYM fastq reads ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 73888707 Sherman Weissman, Yale 99d0f2d92d0fe8d4a2259acd5ab2124c https://www.encodeproject.org/files/ENCFF000XYM/@@download/ENCFF000XYM.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XYN fastq reads ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 122271597 Sherman Weissman, Yale f5fc2c1019264dd848a4134b192fb3e4 https://www.encodeproject.org/files/ENCFF000XYN/@@download/ENCFF000XYN.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XYS fastq reads ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 152790184 Sherman Weissman, Yale 1098f24d4b37348c2775c160fafd7a19 https://www.encodeproject.org/files/ENCFF000XYS/@@download/ENCFF000XYS.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VLB bed narrowPeak peaks ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 2952 Sherman Weissman, Yale 5a1642ac9e762a20501891bcfa977fc4 https://www.encodeproject.org/files/ENCFF001VLB/@@download/ENCFF001VLB.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YPH fastq reads ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 280537112 Sherman Weissman, Yale 6f60cb47cc4d2c33e04387ed475c7fdb https://www.encodeproject.org/files/ENCFF000YPH/@@download/ENCFF000YPH.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YPK fastq reads ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 537802166 Sherman Weissman, Yale 3de3f6afc529871584b5c44fc84eb26b https://www.encodeproject.org/files/ENCFF000YPK/@@download/ENCFF000YPK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZAM bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPH 360836454 Sherman Weissman, Yale b809a85d8ad1f877b58cf78bf76d4889 https://www.encodeproject.org/files/ENCFF000ZAM/@@download/ENCFF000ZAM.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZAN bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPK 708776747 Sherman Weissman, Yale 91be16be56b1e92f1eec0fd4a8c0218b https://www.encodeproject.org/files/ENCFF000ZAN/@@download/ENCFF000ZAN.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZAO bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOY 108717 Sherman Weissman, Yale a28f045ef5463ab6b0f49aebe035c57d https://www.encodeproject.org/files/ENCFF000ZAO/@@download/ENCFF000ZAO.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000ZAP bigWig signal ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 350456128 Sherman Weissman, Yale 4916b18ac76020a13a33e5687550f013 https://www.encodeproject.org/files/ENCFF000ZAP/@@download/ENCFF000ZAP.bigWig hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF001VOY bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 16103 Sherman Weissman, Yale d1811f74462e9d25becbae05f7872427 https://www.encodeproject.org/files/ENCFF001VOY/@@download/ENCFF001VOY.bed.gz hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF002CYG bed narrowPeak optimal idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 52027 ENCODE Consortium Analysis Working Group 536662a0526af993e9407b8b17b37312 https://www.encodeproject.org/files/ENCFF002CYG/@@download/ENCFF002CYG.bed.gz hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF319BQS bigBed narrowPeak optimal idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYG 206260 ENCODE Consortium 5db70dbd180e9209b9cec8c11181353c https://www.encodeproject.org/files/ENCFF319BQS/@@download/ENCFF319BQS.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF280WMP bam unfiltered alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPH, ENCFF643CGH 362356559 ENCODE Processing Pipeline 3116955384b8aa8eb90818862c416e6b https://www.encodeproject.org/files/ENCFF280WMP/@@download/ENCFF280WMP.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF067AEJ bam unfiltered alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPH, ENCFF807MUK 361360090 ENCODE Processing Pipeline ac15c4454da14f689c504a8650889b56 https://www.encodeproject.org/files/ENCFF067AEJ/@@download/ENCFF067AEJ.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF969WVY bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPH, ENCFF807MUK 208451055 ENCODE Processing Pipeline f1da909a9bf5e3d226a1e2fbbd5c83e0 https://www.encodeproject.org/files/ENCFF969WVY/@@download/ENCFF969WVY.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF951ITB bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPH, ENCFF643CGH 208193514 ENCODE Processing Pipeline f27dfde5d70ace56e3cfbfb08b2e40c6 https://www.encodeproject.org/files/ENCFF951ITB/@@download/ENCFF951ITB.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF582BYX bam unfiltered alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPK, ENCFF807MUK 709353123 ENCODE Processing Pipeline 43a54580e490b4596094d88ae4bac07f https://www.encodeproject.org/files/ENCFF582BYX/@@download/ENCFF582BYX.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF900YNG bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPK, ENCFF807MUK 315119018 ENCODE Processing Pipeline 02373f17434d2a00f34ff7d76d5d436b https://www.encodeproject.org/files/ENCFF900YNG/@@download/ENCFF900YNG.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF876GQO bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPK, ENCFF643CGH 314736574 ENCODE Processing Pipeline d3bb42653dffa200637fb82f4ecf5e63 https://www.encodeproject.org/files/ENCFF876GQO/@@download/ENCFF876GQO.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF693OEL bam unfiltered alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPK, ENCFF643CGH 710994643 ENCODE Processing Pipeline 1bbc612856bcbab6829d08758b8b7b1f https://www.encodeproject.org/files/ENCFF693OEL/@@download/ENCFF693OEL.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF267UQD bigWig fold change over control ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF876GQO 151496804 ENCODE Processing Pipeline 47368fda344a227945bdd42d5bfd56a3 https://www.encodeproject.org/files/ENCFF267UQD/@@download/ENCFF267UQD.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF079ITT bigWig signal p-value ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF900YNG, ENCFF998GMZ 245716882 ENCODE Processing Pipeline 0121d890b64ca74a68f77d48819371ce https://www.encodeproject.org/files/ENCFF079ITT/@@download/ENCFF079ITT.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF950LES bigWig signal p-value ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF876GQO, ENCFF951ITB 346212767 ENCODE Processing Pipeline 35d43f9b2fe5ea0aa50f5cf1e3d0f005 https://www.encodeproject.org/files/ENCFF950LES/@@download/ENCFF950LES.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF056WXJ bigWig fold change over control ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF951ITB 104140892 ENCODE Processing Pipeline 99e2a8f89e3f9e797a5e09ec252226bd https://www.encodeproject.org/files/ENCFF056WXJ/@@download/ENCFF056WXJ.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF065KUV bigWig signal p-value ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF951ITB 222158697 ENCODE Processing Pipeline 096eaa015d011ffbac46224d483f7e76 https://www.encodeproject.org/files/ENCFF065KUV/@@download/ENCFF065KUV.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF117REP bigWig signal p-value ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF900YNG, ENCFF969WVY, ENCFF998GMZ 286135117 ENCODE Processing Pipeline cfde2ecc15e47b0f33752c905f0b76d3 https://www.encodeproject.org/files/ENCFF117REP/@@download/ENCFF117REP.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF936ODI bigWig signal p-value ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF969WVY, ENCFF998GMZ 273967649 ENCODE Processing Pipeline 5d823e8c499ef45e981d3c6a705829c1 https://www.encodeproject.org/files/ENCFF936ODI/@@download/ENCFF936ODI.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF267HST bigWig signal p-value ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF876GQO 245569681 ENCODE Processing Pipeline b28c783575cfc508f668f165a2f5ac58 https://www.encodeproject.org/files/ENCFF267HST/@@download/ENCFF267HST.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF499OEV bigWig fold change over control ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF969WVY, ENCFF998GMZ 104073969 ENCODE Processing Pipeline e7838e48680c440f5f6d6136c37c0e71 https://www.encodeproject.org/files/ENCFF499OEV/@@download/ENCFF499OEV.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF214KLT bigWig fold change over control ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF900YNG, ENCFF998GMZ 151686878 ENCODE Processing Pipeline 94020fe34f92585114168e04978de322 https://www.encodeproject.org/files/ENCFF214KLT/@@download/ENCFF214KLT.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF775RTT bigWig fold change over control ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF900YNG, ENCFF969WVY, ENCFF998GMZ 234981136 ENCODE Processing Pipeline 9b12894b10470daf808c8df32c918a61 https://www.encodeproject.org/files/ENCFF775RTT/@@download/ENCFF775RTT.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF201CUI bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF876GQO, ENCFF951ITB 4164833 ENCODE Processing Pipeline eb9e489f4bc9bbec28e61a313f62f383 https://www.encodeproject.org/files/ENCFF201CUI/@@download/ENCFF201CUI.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF881YHI bigWig fold change over control ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF876GQO, ENCFF951ITB 234913563 ENCODE Processing Pipeline b3b2c4235831088da1c5dd5a4029617d https://www.encodeproject.org/files/ENCFF881YHI/@@download/ENCFF881YHI.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF599VMK bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF969WVY, ENCFF998GMZ 1345941 ENCODE Processing Pipeline ad7df233444d5a1f7d90a06cba4f1494 https://www.encodeproject.org/files/ENCFF599VMK/@@download/ENCFF599VMK.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF544MLF bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF951ITB 1346705 ENCODE Processing Pipeline 67d90fcc463688fddf29ebbe857508a3 https://www.encodeproject.org/files/ENCFF544MLF/@@download/ENCFF544MLF.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF127UZX bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF900YNG, ENCFF998GMZ 2639252 ENCODE Processing Pipeline 5a179ea069533493ab67c3846b2f16e4 https://www.encodeproject.org/files/ENCFF127UZX/@@download/ENCFF127UZX.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF454USA bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF544MLF 2980238 ENCODE Processing Pipeline 52b6a3b56bfe47ea4afd2c2617f2d2f5 https://www.encodeproject.org/files/ENCFF454USA/@@download/ENCFF454USA.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF123YGX bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF876GQO 2634911 ENCODE Processing Pipeline 8649724972f3258640a00d64083d15df https://www.encodeproject.org/files/ENCFF123YGX/@@download/ENCFF123YGX.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF308HMT bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599VMK 2978186 ENCODE Processing Pipeline 4ac64061b939cd3d8d0872c194d624f7 https://www.encodeproject.org/files/ENCFF308HMT/@@download/ENCFF308HMT.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF697GQV bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF900YNG, ENCFF969WVY, ENCFF998GMZ 4173794 ENCODE Processing Pipeline 8b7cd1bc822ff1bba4f5025aed089f8f https://www.encodeproject.org/files/ENCFF697GQV/@@download/ENCFF697GQV.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF950ECN bigBed narrowPeak conservative idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF273MGI 118593 ENCODE Processing Pipeline f423e4861221d35f7faf2a1e9df73c56 https://www.encodeproject.org/files/ENCFF950ECN/@@download/ENCFF950ECN.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF360SEL bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF697GQV 10189508 ENCODE Processing Pipeline c91f12d184b941b8dd8cba8c7b8f5f12 https://www.encodeproject.org/files/ENCFF360SEL/@@download/ENCFF360SEL.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF273MGI bed narrowPeak conservative idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF127UZX, ENCFF599VMK, ENCFF697GQV 35662 ENCODE Processing Pipeline b75b69e6df9cdfc3fe4fcdf6ed4e2874 https://www.encodeproject.org/files/ENCFF273MGI/@@download/ENCFF273MGI.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF702EGB bigBed narrowPeak conservative idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF443IZC 121908 ENCODE Processing Pipeline 235c500f23a695e158e5dc406bf282a0 https://www.encodeproject.org/files/ENCFF702EGB/@@download/ENCFF702EGB.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF841YFF bed narrowPeak optimal idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF127UZX, ENCFF599VMK, ENCFF697GQV 37252 ENCODE Processing Pipeline fbccfe352a1f49d06bfa09b7f2ff0116 https://www.encodeproject.org/files/ENCFF841YFF/@@download/ENCFF841YFF.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF240WCH bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YGX 6624367 ENCODE Processing Pipeline 8ad5831ff0f08e9e3bcdfe9e2b275c5b https://www.encodeproject.org/files/ENCFF240WCH/@@download/ENCFF240WCH.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF399DLR bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF127UZX 6646109 ENCODE Processing Pipeline 522519a2f0d1cd411d410c3dae7f39ad https://www.encodeproject.org/files/ENCFF399DLR/@@download/ENCFF399DLR.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF545JVD bed narrowPeak optimal idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YGX, ENCFF201CUI, ENCFF419RSJ, ENCFF544MLF 40880 ENCODE Processing Pipeline a891a9fda490ce3ed55772f7fbfc5a79 https://www.encodeproject.org/files/ENCFF545JVD/@@download/ENCFF545JVD.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF443IZC bed narrowPeak conservative idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YGX, ENCFF201CUI, ENCFF419RSJ, ENCFF544MLF 38081 ENCODE Processing Pipeline c1832bbd8257a431b9bf48d8c2f79fbe https://www.encodeproject.org/files/ENCFF443IZC/@@download/ENCFF443IZC.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF984OMQ bigBed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF201CUI 10226192 ENCODE Processing Pipeline 32740430bda831d917e20ad8006655dc https://www.encodeproject.org/files/ENCFF984OMQ/@@download/ENCFF984OMQ.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF192KSQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF545JVD 126159 ENCODE Processing Pipeline 15becdade5ffc419a7512510e544774f https://www.encodeproject.org/files/ENCFF192KSQ/@@download/ENCFF192KSQ.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF707BCC bigBed narrowPeak optimal idr thresholded peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF841YFF 121162 ENCODE Processing Pipeline 207e37f92d668f702143de81440a629b https://www.encodeproject.org/files/ENCFF707BCC/@@download/ENCFF707BCC.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF487FMG fastq reads ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 1 40 single-ended 1846160877 Xiang-Dong Fu, UCSD c2a07d21d6bdeddc067999c5526ac930 https://www.encodeproject.org/files/ENCFF487FMG/@@download/ENCFF487FMG.fastq.gz Illumina HiSeq 2500 /files/ENCFF061XKR/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF585EDM fastq reads ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 1 40 single-ended 1362977783 Xiang-Dong Fu, UCSD a2d8b652ae6b0ae6471b75e506060b9a https://www.encodeproject.org/files/ENCFF585EDM/@@download/ENCFF585EDM.fastq.gz Illumina HiSeq 2500 /files/ENCFF605JOL/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF033HNB bam unfiltered alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF585EDM, ENCFF807MUK 1576384304 ENCODE Processing Pipeline e2a0b43fda1c84d1027783bfd9535437 https://www.encodeproject.org/files/ENCFF033HNB/@@download/ENCFF033HNB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF755OKE bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF585EDM, ENCFF807MUK 498250386 ENCODE Processing Pipeline c9fab266ac1eb02217f8da5c6b832c95 https://www.encodeproject.org/files/ENCFF755OKE/@@download/ENCFF755OKE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF267HPS bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF585EDM, ENCFF643CGH 497538017 ENCODE Processing Pipeline 4a701144076a539bdcd6506d3a95afbc https://www.encodeproject.org/files/ENCFF267HPS/@@download/ENCFF267HPS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF845WGA bam unfiltered alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF585EDM, ENCFF643CGH 1580947011 ENCODE Processing Pipeline 82c4f3173a2c0e26cc9e9ec2953c4e61 https://www.encodeproject.org/files/ENCFF845WGA/@@download/ENCFF845WGA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF113OAS bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF487FMG, ENCFF807MUK 422075341 ENCODE Processing Pipeline f1b2e5f3dae2470fd9a832d157cb9e1e https://www.encodeproject.org/files/ENCFF113OAS/@@download/ENCFF113OAS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF824EFD bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF487FMG, ENCFF643CGH 421441353 ENCODE Processing Pipeline 6e30dd8727c95f305a3497a8f4dae528 https://www.encodeproject.org/files/ENCFF824EFD/@@download/ENCFF824EFD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF568WIH bam unfiltered alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF487FMG, ENCFF807MUK 1991421644 ENCODE Processing Pipeline 8e82117f90b451c4d094b4bd4e7a6af8 https://www.encodeproject.org/files/ENCFF568WIH/@@download/ENCFF568WIH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF187AOX bam unfiltered alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF487FMG, ENCFF643CGH 1999362557 ENCODE Processing Pipeline 170d856d36eb3510bd55bb583db1a2a4 https://www.encodeproject.org/files/ENCFF187AOX/@@download/ENCFF187AOX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF485TBR bigWig signal p-value ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF755OKE 471738768 ENCODE Processing Pipeline a98e355f62aac695442aaa6b9778a5c6 https://www.encodeproject.org/files/ENCFF485TBR/@@download/ENCFF485TBR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF923DHF bigWig signal p-value ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF113OAS 440699005 ENCODE Processing Pipeline 3aa2693a0853817a904f72fc86772a55 https://www.encodeproject.org/files/ENCFF923DHF/@@download/ENCFF923DHF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF194QRM bigWig fold change over control ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF755OKE 355028762 ENCODE Processing Pipeline f9b5e171e71e39a958069e9f208ffe73 https://www.encodeproject.org/files/ENCFF194QRM/@@download/ENCFF194QRM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF779VND bigBed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF272GTS 12923063 ENCODE Processing Pipeline 8b92b19bc5e830b54cea7b37b8b33f39 https://www.encodeproject.org/files/ENCFF779VND/@@download/ENCFF779VND.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF608GON bigWig fold change over control ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF113OAS, ENCFF462KWM, ENCFF755OKE 767013652 ENCODE Processing Pipeline 55f32ae3b59d91b75834394c091a9d36 https://www.encodeproject.org/files/ENCFF608GON/@@download/ENCFF608GON.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF386BWC bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF755OKE 6118986 ENCODE Processing Pipeline 7e51434831419f8d0770e176efb8c526 https://www.encodeproject.org/files/ENCFF386BWC/@@download/ENCFF386BWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF926LZT bigBed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF386BWC 12853404 ENCODE Processing Pipeline 5b87f6dbc3c28c571fde7e01f40b3241 https://www.encodeproject.org/files/ENCFF926LZT/@@download/ENCFF926LZT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF865CTX bigBed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF661JJB 12840610 ENCODE Processing Pipeline b73716601792d268e592c9b2c48b3e3c https://www.encodeproject.org/files/ENCFF865CTX/@@download/ENCFF865CTX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF377SDH bed narrowPeak conservative idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF272GTS, ENCFF386BWC, ENCFF661JJB 225275 ENCODE Processing Pipeline 5e89bc612dafd2cf7bf1448aafb0ee99 https://www.encodeproject.org/files/ENCFF377SDH/@@download/ENCFF377SDH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF111GOO bigWig signal p-value ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF113OAS, ENCFF462KWM, ENCFF755OKE 1003749712 ENCODE Processing Pipeline f8ffae14f5fd9d3768bfa707be8b6266 https://www.encodeproject.org/files/ENCFF111GOO/@@download/ENCFF111GOO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF272GTS bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF113OAS 6140974 ENCODE Processing Pipeline 9724f3ac29624a7591f874827718ddca https://www.encodeproject.org/files/ENCFF272GTS/@@download/ENCFF272GTS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF125YYI bigWig fold change over control ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF113OAS 313460034 ENCODE Processing Pipeline 701b603d8f68234a1aff9ae661cdc01d https://www.encodeproject.org/files/ENCFF125YYI/@@download/ENCFF125YYI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF661JJB bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF100SSC, ENCFF113OAS, ENCFF462KWM, ENCFF755OKE 7070327 ENCODE Processing Pipeline 7148d802bd071ee73c9ee6cf1e2fab8a https://www.encodeproject.org/files/ENCFF661JJB/@@download/ENCFF661JJB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF866QQG bigBed narrowPeak conservative idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF377SDH 526810 ENCODE Processing Pipeline cd1f791ea2b37a928463e62239765a17 https://www.encodeproject.org/files/ENCFF866QQG/@@download/ENCFF866QQG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF639TOU bed narrowPeak optimal idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF001TDO, ENCFF272GTS, ENCFF386BWC, ENCFF661JJB 247580 ENCODE Processing Pipeline d830ce83f9d99a0ec16fe0dfa6680344 https://www.encodeproject.org/files/ENCFF639TOU/@@download/ENCFF639TOU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF042YRS bigBed narrowPeak optimal idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF639TOU 568217 ENCODE Processing Pipeline beb48e7eef73551d3f1199345f5245f3 https://www.encodeproject.org/files/ENCFF042YRS/@@download/ENCFF042YRS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF992ZAH bigWig fold change over control ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF267HPS 353272083 ENCODE Processing Pipeline 4c110015ab4186050db2ed7c0c81a1d3 https://www.encodeproject.org/files/ENCFF992ZAH/@@download/ENCFF992ZAH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF706WOC bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF267HPS 6118300 ENCODE Processing Pipeline 563ea8d3f8e719b65149f4fc66374522 https://www.encodeproject.org/files/ENCFF706WOC/@@download/ENCFF706WOC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF942FFT bigWig signal p-value ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF267HPS, ENCFF824EFD 866353492 ENCODE Processing Pipeline 66912a515311403e144d5372c06b1a9b https://www.encodeproject.org/files/ENCFF942FFT/@@download/ENCFF942FFT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF201MGZ bigWig signal p-value ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF824EFD 479180763 ENCODE Processing Pipeline c1de73c3584a6ce606136c8671f405fd https://www.encodeproject.org/files/ENCFF201MGZ/@@download/ENCFF201MGZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF587FTV bigWig fold change over control ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF267HPS, ENCFF824EFD 767768781 ENCODE Processing Pipeline 438e62adee6c36a576138fa9dcd61783 https://www.encodeproject.org/files/ENCFF587FTV/@@download/ENCFF587FTV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF337MTS bigBed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF706WOC 12847018 ENCODE Processing Pipeline 59cace02abcb9a93ada83667086cc4b2 https://www.encodeproject.org/files/ENCFF337MTS/@@download/ENCFF337MTS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF729UZN bigBed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF546VPK 12850754 ENCODE Processing Pipeline 77e424c71925e6ed399347415797809c https://www.encodeproject.org/files/ENCFF729UZN/@@download/ENCFF729UZN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF108LGL bigBed narrowPeak conservative idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF225YFT 526624 ENCODE Processing Pipeline 34302a23857c9accbe9afbb875813353 https://www.encodeproject.org/files/ENCFF108LGL/@@download/ENCFF108LGL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF627BHP bed narrowPeak optimal idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF443ULD, ENCFF546VPK, ENCFF706WOC 244463 ENCODE Processing Pipeline 43860769f653b642884d95b26fdf6bcc https://www.encodeproject.org/files/ENCFF627BHP/@@download/ENCFF627BHP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF665DDB bigWig fold change over control ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF824EFD 312396978 ENCODE Processing Pipeline 7bbdc037bfedde2f3c1336f49d332684 https://www.encodeproject.org/files/ENCFF665DDB/@@download/ENCFF665DDB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF546VPK bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF267HPS, ENCFF824EFD 7074772 ENCODE Processing Pipeline e2e484c8a229d1fd92a2f37033fcdee1 https://www.encodeproject.org/files/ENCFF546VPK/@@download/ENCFF546VPK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF541BCJ bigWig signal p-value ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF267HPS 580573796 ENCODE Processing Pipeline b76a7f11227db47c24d8788a7242db0a https://www.encodeproject.org/files/ENCFF541BCJ/@@download/ENCFF541BCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF443ULD bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF824EFD 6093046 ENCODE Processing Pipeline 2116c9da68ac025e8180df99e7f0e067 https://www.encodeproject.org/files/ENCFF443ULD/@@download/ENCFF443ULD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF060OSM bigBed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF443ULD 12866546 ENCODE Processing Pipeline 80a60af73d23726e34281c2ab6be9725 https://www.encodeproject.org/files/ENCFF060OSM/@@download/ENCFF060OSM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF225YFT bed narrowPeak conservative idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF419RSJ, ENCFF443ULD, ENCFF546VPK, ENCFF706WOC 224272 ENCODE Processing Pipeline 278f5613eadf4bbdddf1c82fac97c6a7 https://www.encodeproject.org/files/ENCFF225YFT/@@download/ENCFF225YFT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF358CXO bigBed narrowPeak optimal idr thresholded peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF627BHP 563619 ENCODE Processing Pipeline 8e9d7ba6b6576b415182eb6102f6e85c https://www.encodeproject.org/files/ENCFF358CXO/@@download/ENCFF358CXO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF001HQA bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQL 1101308077 John Stamatoyannopoulos, UW 2ff15bc0a396e67518d5ec5b04ceed4e https://www.encodeproject.org/files/ENCFF001HQA/@@download/ENCFF001HQA.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQB bigBed broadPeak hotspots ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRT 5193976 John Stamatoyannopoulos, UW fcca0496272ef8acf3550aed6985b64b https://www.encodeproject.org/files/ENCFF001HQB/@@download/ENCFF001HQB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQC bigBed broadPeak hotspots ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XRU 5188290 John Stamatoyannopoulos, UW 4d3226f8863f83e98d3d84b9affae117 https://www.encodeproject.org/files/ENCFF001HQC/@@download/ENCFF001HQC.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQD bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRV 1574364 John Stamatoyannopoulos, UW 2a575f65b62a25a95e29bc1a47007813 https://www.encodeproject.org/files/ENCFF001HQD/@@download/ENCFF001HQD.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQE bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XRW 1478743 John Stamatoyannopoulos, UW e4899defb97ac18f4c3bc62bbb916c8b https://www.encodeproject.org/files/ENCFF001HQE/@@download/ENCFF001HQE.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQF bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQM 1183638517 John Stamatoyannopoulos, UW 6757a2e4da9bff0b9602caec051fc38a https://www.encodeproject.org/files/ENCFF001HQF/@@download/ENCFF001HQF.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQG bigWig raw signal ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQA 177603959 John Stamatoyannopoulos, UW 53318b339d0eadd4135663e7d86f95ec https://www.encodeproject.org/files/ENCFF001HQG/@@download/ENCFF001HQG.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQH bigWig raw signal ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQF 197249104 John Stamatoyannopoulos, UW d90f4513fba5667188d93c4e56502a35 https://www.encodeproject.org/files/ENCFF001HQH/@@download/ENCFF001HQH.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQL fastq reads ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1230669722 John Stamatoyannopoulos, UW 7ac5a37d7383e092b72992d05de15c90 https://www.encodeproject.org/files/ENCFF001HQL/@@download/ENCFF001HQL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HQN/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001HQM fastq reads ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1294352391 John Stamatoyannopoulos, UW 12d6707c6769120de6ad8d43e0f6073f https://www.encodeproject.org/files/ENCFF001HQM/@@download/ENCFF001HQM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HQN/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001XRT bed broadPeak hotspots ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQA 2919522 John Stamatoyannopoulos, UW 7c2c3a69c449fecea5ac0f2641928d6e https://www.encodeproject.org/files/ENCFF001XRT/@@download/ENCFF001XRT.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001XRU bed broadPeak hotspots ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQF 2779499 John Stamatoyannopoulos, UW 979c860b1d9b1099afe8e9d4251cfea9 https://www.encodeproject.org/files/ENCFF001XRU/@@download/ENCFF001XRU.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001XRV bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQA 937295 John Stamatoyannopoulos, UW 338697a148ccc83d0ae17ec08a2c3451 https://www.encodeproject.org/files/ENCFF001XRV/@@download/ENCFF001XRV.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF001XRW bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQF 866798 John Stamatoyannopoulos, UW 09854fb94d70441e5f5e75934253be16 https://www.encodeproject.org/files/ENCFF001XRW/@@download/ENCFF001XRW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF002DDD bed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HQA, ENCFF001HQF 1280589 ENCODE Consortium Analysis Working Group 6eef776fc803129c517249a6d8cc4b18 https://www.encodeproject.org/files/ENCFF002DDD/@@download/ENCFF002DDD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF874GSQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDD 2521676 ENCODE Consortium 5a64265277c840f34d024d454b328f5a https://www.encodeproject.org/files/ENCFF874GSQ/@@download/ENCFF874GSQ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF754AWE bam unfiltered alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HQL, ENCFF643CGH 1353651431 ENCODE Processing Pipeline 2a07a1a20249b1fc5ee40d7b7ab9de4d https://www.encodeproject.org/files/ENCFF754AWE/@@download/ENCFF754AWE.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF647KJA bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQM, ENCFF643CGH 997744642 ENCODE Processing Pipeline cccf691f586ebac0c80deaede5abc04f https://www.encodeproject.org/files/ENCFF647KJA/@@download/ENCFF647KJA.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF616SYW bam unfiltered alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQM, ENCFF643CGH 1458376765 ENCODE Processing Pipeline aaf337a322d7afbe54ea464981629443 https://www.encodeproject.org/files/ENCFF616SYW/@@download/ENCFF616SYW.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF288FQY bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HQL, ENCFF643CGH 880352057 ENCODE Processing Pipeline c5f06aef1fea8b44f8786db1299d8cad https://www.encodeproject.org/files/ENCFF288FQY/@@download/ENCFF288FQY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF106WBM bam unfiltered alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQM, ENCFF807MUK 1452644114 ENCODE Processing Pipeline 7b3e75f7b25ad84c6a3d056a7a41a9b8 https://www.encodeproject.org/files/ENCFF106WBM/@@download/ENCFF106WBM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF115BFX bam unfiltered alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HQL, ENCFF807MUK 1349070150 ENCODE Processing Pipeline d220b6d4d0948bae14796b9affa87502 https://www.encodeproject.org/files/ENCFF115BFX/@@download/ENCFF115BFX.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF470KVA bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HQL, ENCFF807MUK 880623533 ENCODE Processing Pipeline 02adf366c2b3c89503d5cca3c5b513cc https://www.encodeproject.org/files/ENCFF470KVA/@@download/ENCFF470KVA.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF066DPY bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQM, ENCFF807MUK 998006777 ENCODE Processing Pipeline 9ec9f4957770a521c509c0882863767b https://www.encodeproject.org/files/ENCFF066DPY/@@download/ENCFF066DPY.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF074LCL bigWig fold change over control ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF066DPY, ENCFF327YGC 393848012 ENCODE Processing Pipeline e4f68de32959213d2274bc7c0f344b78 https://www.encodeproject.org/files/ENCFF074LCL/@@download/ENCFF074LCL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF095ASF bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF610GLP 11198847 ENCODE Processing Pipeline c9f3bfaff2b23690fbfc1ec82d51c4ac https://www.encodeproject.org/files/ENCFF095ASF/@@download/ENCFF095ASF.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF040HJV bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF541OOY 11707810 ENCODE Processing Pipeline 6d6c9e3a4c575661343af1546ec2f541 https://www.encodeproject.org/files/ENCFF040HJV/@@download/ENCFF040HJV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF780ZEP bigWig fold change over control ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327YGC, ENCFF470KVA 357232327 ENCODE Processing Pipeline 9c72bcbb472f1ab530b045d020bac391 https://www.encodeproject.org/files/ENCFF780ZEP/@@download/ENCFF780ZEP.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF999LSE bigWig signal p-value ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF066DPY, ENCFF327YGC, ENCFF470KVA 432364008 ENCODE Processing Pipeline 15d1f7a8ca6ada863627a9da0996b0bb https://www.encodeproject.org/files/ENCFF999LSE/@@download/ENCFF999LSE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF178KSO bigWig fold change over control ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF066DPY, ENCFF327YGC, ENCFF470KVA 642912492 ENCODE Processing Pipeline 463cd8e289e1f1d4db8bc4837b39c15e https://www.encodeproject.org/files/ENCFF178KSO/@@download/ENCFF178KSO.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF290IBC bed narrowPeak conservative idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF470ARY, ENCFF541OOY, ENCFF610GLP 667345 ENCODE Processing Pipeline 2fdb7564100def125b831104d9e40381 https://www.encodeproject.org/files/ENCFF290IBC/@@download/ENCFF290IBC.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF933VBD bed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF470ARY, ENCFF541OOY, ENCFF610GLP 739247 ENCODE Processing Pipeline a0ca7418cb4781ded156ca6489564a8e https://www.encodeproject.org/files/ENCFF933VBD/@@download/ENCFF933VBD.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF375RUK bigWig signal p-value ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327YGC, ENCFF470KVA 414582654 ENCODE Processing Pipeline 489cbcaad41fb9b204da57d9d98ecaed https://www.encodeproject.org/files/ENCFF375RUK/@@download/ENCFF375RUK.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF470ARY bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF066DPY, ENCFF327YGC 4543454 ENCODE Processing Pipeline 02892451904ce256dde4a1e8c00bea2b https://www.encodeproject.org/files/ENCFF470ARY/@@download/ENCFF470ARY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF158JVH bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF470ARY 11231003 ENCODE Processing Pipeline ff9289d40875dc723f6078b97d4b33f2 https://www.encodeproject.org/files/ENCFF158JVH/@@download/ENCFF158JVH.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF499SZQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF933VBD 1338575 ENCODE Processing Pipeline 7373566998c923bcb24125fa595dd9d9 https://www.encodeproject.org/files/ENCFF499SZQ/@@download/ENCFF499SZQ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF862PLT bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF293WPK 11717350 ENCODE Processing Pipeline 60cfb20e8d8d55cca579e149c9942202 https://www.encodeproject.org/files/ENCFF862PLT/@@download/ENCFF862PLT.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF008BNY bigWig signal p-value ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF066DPY, ENCFF327YGC 431693560 ENCODE Processing Pipeline 3d4058bb37d2b702bb78455cf9a37100 https://www.encodeproject.org/files/ENCFF008BNY/@@download/ENCFF008BNY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF610GLP bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327YGC, ENCFF470KVA 4675468 ENCODE Processing Pipeline da53e8f4957c778f8467e4f97692440a https://www.encodeproject.org/files/ENCFF610GLP/@@download/ENCFF610GLP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF541OOY bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF066DPY, ENCFF327YGC, ENCFF470KVA 5009654 ENCODE Processing Pipeline bf115d541785d285f3f79f070af4aa11 https://www.encodeproject.org/files/ENCFF541OOY/@@download/ENCFF541OOY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF335BQJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF290IBC 1248808 ENCODE Processing Pipeline a16542a27f10efd0eb326dc61255760d https://www.encodeproject.org/files/ENCFF335BQJ/@@download/ENCFF335BQJ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF702TBG bigWig fold change over control ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF288FQY, ENCFF647KJA 639973919 ENCODE Processing Pipeline e7d2e8f06f668d378247675db537bf40 https://www.encodeproject.org/files/ENCFF702TBG/@@download/ENCFF702TBG.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF293WPK bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF288FQY, ENCFF647KJA 5013340 ENCODE Processing Pipeline 469a63cdca8a2eb1c9d087e1887103dd https://www.encodeproject.org/files/ENCFF293WPK/@@download/ENCFF293WPK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF310TCJ bed narrowPeak conservative idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF293WPK, ENCFF419RSJ, ENCFF796FYL, ENCFF899LFJ 670932 ENCODE Processing Pipeline e1e8d15376451f673458e4088cb14d84 https://www.encodeproject.org/files/ENCFF310TCJ/@@download/ENCFF310TCJ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF956JET bigWig signal p-value ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF288FQY 414418076 ENCODE Processing Pipeline f5777f88a486ef840494e3dcbf16d4ee https://www.encodeproject.org/files/ENCFF956JET/@@download/ENCFF956JET.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF376MZL bigWig fold change over control ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF288FQY 357345755 ENCODE Processing Pipeline 65aa1337783cb09c20a89ad670e44475 https://www.encodeproject.org/files/ENCFF376MZL/@@download/ENCFF376MZL.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF899LFJ bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF647KJA 4487492 ENCODE Processing Pipeline 38b6dc879649ca9cd4ffa79616455cd2 https://www.encodeproject.org/files/ENCFF899LFJ/@@download/ENCFF899LFJ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF572VJL bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF796FYL 11202549 ENCODE Processing Pipeline 81883c28d82e7a258a7cb6eb3a0edda6 https://www.encodeproject.org/files/ENCFF572VJL/@@download/ENCFF572VJL.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF093QTY bed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF293WPK, ENCFF419RSJ, ENCFF796FYL, ENCFF899LFJ 756589 ENCODE Processing Pipeline 7e1a07731a23fe78f00dfe3d07795266 https://www.encodeproject.org/files/ENCFF093QTY/@@download/ENCFF093QTY.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF796FYL bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF288FQY 4673906 ENCODE Processing Pipeline ddd02afbdd845065d74ef74e2376148a https://www.encodeproject.org/files/ENCFF796FYL/@@download/ENCFF796FYL.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF734YQJ bigWig signal p-value ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF647KJA 433934004 ENCODE Processing Pipeline c7b25a85034727dbf3bf6decaf86ddb9 https://www.encodeproject.org/files/ENCFF734YQJ/@@download/ENCFF734YQJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF802ALM bigWig signal p-value ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF288FQY, ENCFF647KJA 432162684 ENCODE Processing Pipeline a895bb78f9272afb80c98a4a6df313b6 https://www.encodeproject.org/files/ENCFF802ALM/@@download/ENCFF802ALM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF719KSQ bigWig fold change over control ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF647KJA 400351704 ENCODE Processing Pipeline 1f33dd4ba7c9e60fafdb11470845e171 https://www.encodeproject.org/files/ENCFF719KSQ/@@download/ENCFF719KSQ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF460UDR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF093QTY 1361789 ENCODE Processing Pipeline 268f2d3e79f5dfce329c09e04cc6ed51 https://www.encodeproject.org/files/ENCFF460UDR/@@download/ENCFF460UDR.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF301DFH bigBed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF899LFJ 11163612 ENCODE Processing Pipeline 70600f01cec22f8847ce590eab8d1350 https://www.encodeproject.org/files/ENCFF301DFH/@@download/ENCFF301DFH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF504WWK bigBed narrowPeak conservative idr thresholded peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF310TCJ 1255929 ENCODE Processing Pipeline f4745bb67245ef298f349db7193b167e https://www.encodeproject.org/files/ENCFF504WWK/@@download/ENCFF504WWK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF000QRX bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QSN 2622676472 Richard Myers, HAIB 68215d88e5ed777894bd35553aa07211 https://www.encodeproject.org/files/ENCFF000QRX/@@download/ENCFF000QRX.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QRY bigBed broadPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UNZ 192696 Richard Myers, HAIB a9ccd751d7d17203ef8b0713d5beeae3 https://www.encodeproject.org/files/ENCFF000QRY/@@download/ENCFF000QRY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QRZ bigBed broadPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UOA 169577 Richard Myers, HAIB 693904dc1579647202bb2eac126c85fc https://www.encodeproject.org/files/ENCFF000QRZ/@@download/ENCFF000QRZ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QSA bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QST 3656176357 Richard Myers, HAIB a15bbe64be21ac3119045d88f4b60977 https://www.encodeproject.org/files/ENCFF000QSA/@@download/ENCFF000QSA.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QSC bigWig raw signal ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 27749854 Richard Myers, HAIB df03044c55563a98208d53643dbb0062 https://www.encodeproject.org/files/ENCFF000QSC/@@download/ENCFF000QSC.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000QSD bigWig raw signal ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 49220673 Richard Myers, HAIB 1f405f8232d7ece44a1be4d5e6127303 https://www.encodeproject.org/files/ENCFF000QSD/@@download/ENCFF000QSD.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000QSN fastq reads ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 2188855964 Richard Myers, HAIB 0ff5357985e99b5b1afbc97a3e0d042a https://www.encodeproject.org/files/ENCFF000QSN/@@download/ENCFF000QSN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QTJ/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QST fastq reads ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 3028677639 Richard Myers, HAIB 7768e584369c3af5067028de469b91ea https://www.encodeproject.org/files/ENCFF000QST/@@download/ENCFF000QST.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QTU/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UNZ bed broadPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 93389 Richard Myers, HAIB 4ff52946149be339f56c5e6b09e52bf1 https://www.encodeproject.org/files/ENCFF001UNZ/@@download/ENCFF001UNZ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UOA bed broadPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 80582 Richard Myers, HAIB c8e43843b5a8fa173e6d615997c2503d https://www.encodeproject.org/files/ENCFF001UOA/@@download/ENCFF001UOA.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CNA bed narrowPeak optimal idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 138538 ENCODE Consortium Analysis Working Group 9f4fb7fe59cb2f7d0c36b24f5131465d https://www.encodeproject.org/files/ENCFF002CNA/@@download/ENCFF002CNA.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF855OGQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNA 438380 ENCODE Consortium 7edc3e773426ca2d23a424a06017502a https://www.encodeproject.org/files/ENCFF855OGQ/@@download/ENCFF855OGQ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF527HDY bam unfiltered alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QSN, ENCFF643CGH 2393791006 ENCODE Processing Pipeline fa4acc46d2bc14df8d4f5fe147847caa https://www.encodeproject.org/files/ENCFF527HDY/@@download/ENCFF527HDY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF337NPB bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QSN, ENCFF643CGH 549580794 ENCODE Processing Pipeline 3f030c8670f5e6f49196949f51f5bc40 https://www.encodeproject.org/files/ENCFF337NPB/@@download/ENCFF337NPB.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF573FJR bam unfiltered alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QST, ENCFF643CGH 3259584701 ENCODE Processing Pipeline 35e3f64ade0f5ca8382b5055237a858f https://www.encodeproject.org/files/ENCFF573FJR/@@download/ENCFF573FJR.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF460RPS bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QST, ENCFF643CGH 450263088 ENCODE Processing Pipeline 00bef0e08b9b9ec1d17298e869d27afe https://www.encodeproject.org/files/ENCFF460RPS/@@download/ENCFF460RPS.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF711CQV bam unfiltered alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QSN, ENCFF807MUK 2391199601 ENCODE Processing Pipeline 49fc636078e7c385794c7a0c9556e684 https://www.encodeproject.org/files/ENCFF711CQV/@@download/ENCFF711CQV.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF990BKO bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QSN, ENCFF807MUK 549712358 ENCODE Processing Pipeline ccd7d5bc68eeaa6460b4598d26a4d642 https://www.encodeproject.org/files/ENCFF990BKO/@@download/ENCFF990BKO.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF846HBE bam unfiltered alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QST, ENCFF807MUK 3254016449 ENCODE Processing Pipeline 9850eb477ce2165cd36fe925ac2322eb https://www.encodeproject.org/files/ENCFF846HBE/@@download/ENCFF846HBE.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF555PAB bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QST, ENCFF807MUK 450400543 ENCODE Processing Pipeline dae1ba5ad022d7c68e38c261cdf55fe0 https://www.encodeproject.org/files/ENCFF555PAB/@@download/ENCFF555PAB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF643ZZM bigWig signal p-value ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF270FBL, ENCFF337NPB, ENCFF349WAO 350578314 ENCODE Processing Pipeline 070c20f577ac1bb54b0646fc27e83db6 https://www.encodeproject.org/files/ENCFF643ZZM/@@download/ENCFF643ZZM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF604XHI bigWig signal p-value ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF270FBL, ENCFF349WAO, ENCFF460RPS 375967379 ENCODE Processing Pipeline 71692262881ecf2e0de4f22f3b8078df https://www.encodeproject.org/files/ENCFF604XHI/@@download/ENCFF604XHI.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF013WWD bigWig fold change over control ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF270FBL, ENCFF337NPB, ENCFF349WAO 211903970 ENCODE Processing Pipeline 6082a1dc82752b3f2e025771d342af82 https://www.encodeproject.org/files/ENCFF013WWD/@@download/ENCFF013WWD.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF165DFT bigWig signal p-value ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF270FBL, ENCFF337NPB, ENCFF349WAO, ENCFF460RPS 452178117 ENCODE Processing Pipeline 123e3d69901d4a0019b47b93b5be527f https://www.encodeproject.org/files/ENCFF165DFT/@@download/ENCFF165DFT.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF844PFK bigWig fold change over control ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF270FBL, ENCFF349WAO, ENCFF460RPS 175160269 ENCODE Processing Pipeline c70383166cca84a21b944fbf67f7a60c https://www.encodeproject.org/files/ENCFF844PFK/@@download/ENCFF844PFK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF464BAU bigWig fold change over control ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF270FBL, ENCFF337NPB, ENCFF349WAO, ENCFF460RPS 351490041 ENCODE Processing Pipeline 3b38346e4a453696208168b7b132266d https://www.encodeproject.org/files/ENCFF464BAU/@@download/ENCFF464BAU.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF520YQP bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF270FBL, ENCFF337NPB, ENCFF349WAO 5088510 ENCODE Processing Pipeline d113da9e487a24eef649f5320f94f768 https://www.encodeproject.org/files/ENCFF520YQP/@@download/ENCFF520YQP.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF115FDN bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF270FBL, ENCFF349WAO, ENCFF460RPS 3662046 ENCODE Processing Pipeline dcb6532a0b96acd3111b990d4c04ae01 https://www.encodeproject.org/files/ENCFF115FDN/@@download/ENCFF115FDN.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF391ZZY bigBed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF520YQP 10524116 ENCODE Processing Pipeline 5185216537fe46102b7c70c6b7cfe85b https://www.encodeproject.org/files/ENCFF391ZZY/@@download/ENCFF391ZZY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF680ZVD bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF270FBL, ENCFF337NPB, ENCFF349WAO, ENCFF460RPS 5578818 ENCODE Processing Pipeline e27a1ff7e54cbe66193191cb01ff4105 https://www.encodeproject.org/files/ENCFF680ZVD/@@download/ENCFF680ZVD.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF897NMG bigBed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF680ZVD 12988287 ENCODE Processing Pipeline 658c8c9b66de17f550642416dd1f7982 https://www.encodeproject.org/files/ENCFF897NMG/@@download/ENCFF897NMG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF994KMK bigBed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF115FDN 8680335 ENCODE Processing Pipeline 910722890476d6fac7aa3a8a8b06f2d7 https://www.encodeproject.org/files/ENCFF994KMK/@@download/ENCFF994KMK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF388BTU bed narrowPeak conservative idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF115FDN, ENCFF419RSJ, ENCFF520YQP, ENCFF680ZVD 103335 ENCODE Processing Pipeline fae78a8b5da94027d1668aaebb721d4c https://www.encodeproject.org/files/ENCFF388BTU/@@download/ENCFF388BTU.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF206PHL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF388BTU 222099 ENCODE Processing Pipeline fffdca6d1ddb93a3ac455d0edcd170cd https://www.encodeproject.org/files/ENCFF206PHL/@@download/ENCFF206PHL.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF934XSC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF713ZPE 258037 ENCODE Processing Pipeline 20c084809efcc97553bcd061f9080743 https://www.encodeproject.org/files/ENCFF934XSC/@@download/ENCFF934XSC.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF713ZPE bed narrowPeak optimal idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF115FDN, ENCFF419RSJ, ENCFF520YQP, ENCFF680ZVD 129989 ENCODE Processing Pipeline 90cfb51c074d73fa3f6470e6ddde6ba3 https://www.encodeproject.org/files/ENCFF713ZPE/@@download/ENCFF713ZPE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF751BXT bigWig fold change over control ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB, ENCFF990BKO 349980085 ENCODE Processing Pipeline fdd0a1844adf2637be79ef37455a0a61 https://www.encodeproject.org/files/ENCFF751BXT/@@download/ENCFF751BXT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF850HQY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF442UVV 220793 ENCODE Processing Pipeline e0e67623fada8c547536c7d23df747fa https://www.encodeproject.org/files/ENCFF850HQY/@@download/ENCFF850HQY.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF047ORH bigWig signal p-value ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB 373547285 ENCODE Processing Pipeline a26cda48b58873d3eb0b84c581097bbe https://www.encodeproject.org/files/ENCFF047ORH/@@download/ENCFF047ORH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF966CZQ bigWig fold change over control ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB 177262473 ENCODE Processing Pipeline d15c26eb1cc0bb6f54cba5f4cb9d79a6 https://www.encodeproject.org/files/ENCFF966CZQ/@@download/ENCFF966CZQ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF442UVV bed narrowPeak conservative idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF010OHK, ENCFF343XMY, ENCFF806MDV 102706 ENCODE Processing Pipeline 28d5e824372c91e3e9dd52fc2b36b4de https://www.encodeproject.org/files/ENCFF442UVV/@@download/ENCFF442UVV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF066GAW bigWig signal p-value ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB, ENCFF990BKO 433983002 ENCODE Processing Pipeline 2a00d3b15ba0ff636112976298982b2d https://www.encodeproject.org/files/ENCFF066GAW/@@download/ENCFF066GAW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF806MDV bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134TNE, ENCFF248GJG, ENCFF990BKO 5086558 ENCODE Processing Pipeline ab4d30bdecb62c12c23fa55a734700c8 https://www.encodeproject.org/files/ENCFF806MDV/@@download/ENCFF806MDV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF009FPE bigBed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF806MDV 10525298 ENCODE Processing Pipeline fab31ed4cf9468a16cd32cc12c5efd22 https://www.encodeproject.org/files/ENCFF009FPE/@@download/ENCFF009FPE.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF732RQR bigBed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF010OHK 12985915 ENCODE Processing Pipeline 3023901023469be3b009b8d0aa61491f https://www.encodeproject.org/files/ENCFF732RQR/@@download/ENCFF732RQR.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF809ECY bed narrowPeak optimal idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF010OHK, ENCFF343XMY, ENCFF806MDV 130269 ENCODE Processing Pipeline 399777c2cb290a54d476ab74c5d32b5c https://www.encodeproject.org/files/ENCFF809ECY/@@download/ENCFF809ECY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF676FRB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809ECY 258133 ENCODE Processing Pipeline f0b7b3934203bd0268a6e6732e81a6d7 https://www.encodeproject.org/files/ENCFF676FRB/@@download/ENCFF676FRB.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF166FAI bigWig signal p-value ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134TNE, ENCFF248GJG, ENCFF990BKO 377257211 ENCODE Processing Pipeline fa02a7ce614449f9a55659d557a442d3 https://www.encodeproject.org/files/ENCFF166FAI/@@download/ENCFF166FAI.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF717UUP bigWig fold change over control ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134TNE, ENCFF248GJG, ENCFF990BKO 211320594 ENCODE Processing Pipeline 8be4166a3866b56cabdac53ba5adc613 https://www.encodeproject.org/files/ENCFF717UUP/@@download/ENCFF717UUP.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF343XMY bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB 3664593 ENCODE Processing Pipeline 5803a50288c019371d7c79257bfd792a https://www.encodeproject.org/files/ENCFF343XMY/@@download/ENCFF343XMY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF010OHK bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB, ENCFF990BKO 5580402 ENCODE Processing Pipeline daa3a59af8f07da2391ed6a747d8316c https://www.encodeproject.org/files/ENCFF010OHK/@@download/ENCFF010OHK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF828WCI bigBed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF343XMY 8676247 ENCODE Processing Pipeline 5b9fb9e91d45a3d4b1c3442f84685924 https://www.encodeproject.org/files/ENCFF828WCI/@@download/ENCFF828WCI.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PIV bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PJJ 1267768251 Richard Myers, HAIB 01a13a04b37384512d2f2c4fd1661eec https://www.encodeproject.org/files/ENCFF000PIV/@@download/ENCFF000PIV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000PIW bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PJD 911508637 Richard Myers, HAIB 7e58373ae4b5ba63e53657a075cbd9be https://www.encodeproject.org/files/ENCFF000PIW/@@download/ENCFF000PIW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000PIY bigBed broadPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UGC 983531 Richard Myers, HAIB a834652b3f4951aa89e13005e311a9c1 https://www.encodeproject.org/files/ENCFF000PIY/@@download/ENCFF000PIY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000PIZ bigBed broadPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UGD 275865 Richard Myers, HAIB a24b49a120baff1e7c783bc8d8bb2ca5 https://www.encodeproject.org/files/ENCFF000PIZ/@@download/ENCFF000PIZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000PJA bigWig raw signal ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 42998682 Richard Myers, HAIB 447cb9be56a8b2aa912a72fc813d3e7e https://www.encodeproject.org/files/ENCFF000PJA/@@download/ENCFF000PJA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PJB bigWig raw signal ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 16660596 Richard Myers, HAIB eeed49943c7f7e0232c5938559d60ce3 https://www.encodeproject.org/files/ENCFF000PJB/@@download/ENCFF000PJB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000PJD fastq reads ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 842610025 Richard Myers, HAIB d12be8163d12ace75c2f99a170cb51ff https://www.encodeproject.org/files/ENCFF000PJD/@@download/ENCFF000PJD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000PJJ fastq reads ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1248096714 Richard Myers, HAIB 1fba0d4468a5a8ed07851fd49ac7c11a https://www.encodeproject.org/files/ENCFF000PJJ/@@download/ENCFF000PJJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF001UGC bed broadPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 515234 Richard Myers, HAIB ffb41574d7a8932f29774d4172754568 https://www.encodeproject.org/files/ENCFF001UGC/@@download/ENCFF001UGC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001UGD bed broadPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 118058 Richard Myers, HAIB f01026be2b8394133bcc0690d336a6a9 https://www.encodeproject.org/files/ENCFF001UGD/@@download/ENCFF001UGD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CKM bed narrowPeak optimal idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 448406 ENCODE Consortium Analysis Working Group 5ddcd742a555f8e2d7f1e61636550a9e https://www.encodeproject.org/files/ENCFF002CKM/@@download/ENCFF002CKM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF349TNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKM 1023426 ENCODE Consortium 844fc3469a4348cf5c4e001dd1f680d8 https://www.encodeproject.org/files/ENCFF349TNQ/@@download/ENCFF349TNQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF940PJP bam unfiltered alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJD, ENCFF643CGH 1065312478 ENCODE Processing Pipeline ac3b3f84e088faffb939ec39361febfb https://www.encodeproject.org/files/ENCFF940PJP/@@download/ENCFF940PJP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF188GPG bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJD, ENCFF643CGH 514810980 ENCODE Processing Pipeline 55fca4a0e1247ece0b7456fab57fc2f2 https://www.encodeproject.org/files/ENCFF188GPG/@@download/ENCFF188GPG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF242RQW bam unfiltered alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJJ, ENCFF643CGH 1572732381 ENCODE Processing Pipeline c4ddfc2ab9bf4c2c573650eba4338227 https://www.encodeproject.org/files/ENCFF242RQW/@@download/ENCFF242RQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF030DWK bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJJ, ENCFF643CGH 839594124 ENCODE Processing Pipeline 250a4614c5f1328c235f4075acafe40f https://www.encodeproject.org/files/ENCFF030DWK/@@download/ENCFF030DWK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF317TRQ bam unfiltered alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJJ, ENCFF807MUK 1568583723 ENCODE Processing Pipeline a1e0a286143463350562b3581729ddaf https://www.encodeproject.org/files/ENCFF317TRQ/@@download/ENCFF317TRQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF288PPP bam unfiltered alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJD, ENCFF807MUK 1061898427 ENCODE Processing Pipeline 0c9bb491562598b4275486912b19bb5e https://www.encodeproject.org/files/ENCFF288PPP/@@download/ENCFF288PPP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF349ECU bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJD, ENCFF807MUK 514903547 ENCODE Processing Pipeline f59f88313625d05453727022600099ae https://www.encodeproject.org/files/ENCFF349ECU/@@download/ENCFF349ECU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF266XYT bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJJ, ENCFF807MUK 840004673 ENCODE Processing Pipeline 28246eeb3d58d40c137fd48104d6557d https://www.encodeproject.org/files/ENCFF266XYT/@@download/ENCFF266XYT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF327OJH bigWig signal p-value ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF030DWK, ENCFF285LVE 416395456 ENCODE Processing Pipeline 761dbde793752e4d0dded804258751ba https://www.encodeproject.org/files/ENCFF327OJH/@@download/ENCFF327OJH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF954OYS bigWig signal p-value ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF188GPG, ENCFF285LVE 400694150 ENCODE Processing Pipeline 91b0b6dc90e20f9ba550335b712253eb https://www.encodeproject.org/files/ENCFF954OYS/@@download/ENCFF954OYS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF518SPY bigWig signal p-value ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF030DWK, ENCFF188GPG, ENCFF285LVE 578669662 ENCODE Processing Pipeline 6edd2c9f2a4f5dc3a79b75c745169280 https://www.encodeproject.org/files/ENCFF518SPY/@@download/ENCFF518SPY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF858XQF bigWig fold change over control ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF030DWK, ENCFF285LVE 404614330 ENCODE Processing Pipeline f0a48db5a7a5b2576d8b87b7e2ec8fd6 https://www.encodeproject.org/files/ENCFF858XQF/@@download/ENCFF858XQF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF097JHU bigWig fold change over control ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF188GPG, ENCFF285LVE 289490863 ENCODE Processing Pipeline 446b1420bb0ad8ba8d50866a85bdea29 https://www.encodeproject.org/files/ENCFF097JHU/@@download/ENCFF097JHU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF792BDE bigWig fold change over control ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF030DWK, ENCFF188GPG, ENCFF285LVE 596002103 ENCODE Processing Pipeline 337acf8dff5747bbf770b1f7863db7ee https://www.encodeproject.org/files/ENCFF792BDE/@@download/ENCFF792BDE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF233LRK bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF030DWK, ENCFF285LVE 5696177 ENCODE Processing Pipeline 5853a48e23bd8bf0924bd895ba261e0d https://www.encodeproject.org/files/ENCFF233LRK/@@download/ENCFF233LRK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF066KKC bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF188GPG, ENCFF285LVE 4241488 ENCODE Processing Pipeline a18228529461b3acd956a930f9ddd0b2 https://www.encodeproject.org/files/ENCFF066KKC/@@download/ENCFF066KKC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF528RCQ bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF030DWK, ENCFF188GPG, ENCFF285LVE 5949388 ENCODE Processing Pipeline aa47f618caf7446c5e80f994c243c043 https://www.encodeproject.org/files/ENCFF528RCQ/@@download/ENCFF528RCQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF560PXD bigBed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF233LRK 12995375 ENCODE Processing Pipeline 959a37544a2de4efae0c99d0f142a25e https://www.encodeproject.org/files/ENCFF560PXD/@@download/ENCFF560PXD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF728ZKG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF176NJZ 541368 ENCODE Processing Pipeline 5380c6485154da52ed50b38c2fa3e3f0 https://www.encodeproject.org/files/ENCFF728ZKG/@@download/ENCFF728ZKG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF429TMG bigBed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF066KKC 10141183 ENCODE Processing Pipeline b29a7591822e3896d993bf5678d94257 https://www.encodeproject.org/files/ENCFF429TMG/@@download/ENCFF429TMG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF297MWK bigBed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF528RCQ 13197536 ENCODE Processing Pipeline a4d49b94fe29a5d234ed053c4959ccac https://www.encodeproject.org/files/ENCFF297MWK/@@download/ENCFF297MWK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF589GSN bed narrowPeak optimal idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF066KKC, ENCFF233LRK, ENCFF419RSJ, ENCFF528RCQ 467355 ENCODE Processing Pipeline c38af404556a17b40eeeeb8d334fe452 https://www.encodeproject.org/files/ENCFF589GSN/@@download/ENCFF589GSN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF295EFP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF589GSN 910866 ENCODE Processing Pipeline ac7db7b37d9ede366b9f8795a66f13d6 https://www.encodeproject.org/files/ENCFF295EFP/@@download/ENCFF295EFP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF176NJZ bed narrowPeak conservative idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF066KKC, ENCFF233LRK, ENCFF419RSJ, ENCFF528RCQ 307158 ENCODE Processing Pipeline 4ca1d5d3f19bfa8ef7ccffe34b4529e8 https://www.encodeproject.org/files/ENCFF176NJZ/@@download/ENCFF176NJZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF780HHM bigBed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF380BKK 12993084 ENCODE Processing Pipeline dae6482d5840cf118e41bbaf5e2a0fc4 https://www.encodeproject.org/files/ENCFF780HHM/@@download/ENCFF780HHM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF765ZDF bigWig signal p-value ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266XYT, ENCFF346RZT 552820560 ENCODE Processing Pipeline 1d0ea179bcec6399959afb3ac66ed4a9 https://www.encodeproject.org/files/ENCFF765ZDF/@@download/ENCFF765ZDF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF420AYH bigWig fold change over control ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF349ECU 290217889 ENCODE Processing Pipeline 8bc28e28781db6ae0184319a0d2879fd https://www.encodeproject.org/files/ENCFF420AYH/@@download/ENCFF420AYH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF925KPL bigBed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF561VAE 10144160 ENCODE Processing Pipeline 72103044ec0533e9ae365b20ce4212ee https://www.encodeproject.org/files/ENCFF925KPL/@@download/ENCFF925KPL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF138UQY bed narrowPeak conservative idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF380BKK, ENCFF561VAE, ENCFF724UMT 308597 ENCODE Processing Pipeline cb1da39d0fd16396636ec4e1c7ce8b5c https://www.encodeproject.org/files/ENCFF138UQY/@@download/ENCFF138UQY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF483NSF bigWig fold change over control ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF266XYT, ENCFF346RZT, ENCFF349ECU 599853055 ENCODE Processing Pipeline fa7bf4fbf64450672476d886119e7761 https://www.encodeproject.org/files/ENCFF483NSF/@@download/ENCFF483NSF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF561VAE bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF349ECU 4241707 ENCODE Processing Pipeline 7b0a5fea5ae5cbc51a424bd71e8b45f2 https://www.encodeproject.org/files/ENCFF561VAE/@@download/ENCFF561VAE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF485WIK bigWig signal p-value ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF266XYT, ENCFF346RZT, ENCFF349ECU 579007942 ENCODE Processing Pipeline 4cb3f514c997d2ac308e4fff35ce9bdb https://www.encodeproject.org/files/ENCFF485WIK/@@download/ENCFF485WIK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF724UMT bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF266XYT, ENCFF346RZT, ENCFF349ECU 6009534 ENCODE Processing Pipeline 990a34c6ddbbb2ff0043e76048bd591b https://www.encodeproject.org/files/ENCFF724UMT/@@download/ENCFF724UMT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF643XRE bigWig fold change over control ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266XYT, ENCFF346RZT 408553479 ENCODE Processing Pipeline b230da67fdc3dcc979b82407d561beab https://www.encodeproject.org/files/ENCFF643XRE/@@download/ENCFF643XRE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF380BKK bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266XYT, ENCFF346RZT 5697661 ENCODE Processing Pipeline 9a884461cd8092870ab313c7e55ddc32 https://www.encodeproject.org/files/ENCFF380BKK/@@download/ENCFF380BKK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF730YRK bigWig signal p-value ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF349ECU 482237783 ENCODE Processing Pipeline d98b4a860dc9800d10e63b4b038d1b17 https://www.encodeproject.org/files/ENCFF730YRK/@@download/ENCFF730YRK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF453WKL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF138UQY 542606 ENCODE Processing Pipeline 04683d1e8b019162e797b27cf323ddba https://www.encodeproject.org/files/ENCFF453WKL/@@download/ENCFF453WKL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF007DUT bigBed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF724UMT 13208212 ENCODE Processing Pipeline 38c4515578c918441cb5c2ac932e91c7 https://www.encodeproject.org/files/ENCFF007DUT/@@download/ENCFF007DUT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF459DRJ bed narrowPeak optimal idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF380BKK, ENCFF561VAE, ENCFF724UMT 459887 ENCODE Processing Pipeline c7902bf5a399621d8bc456b6fcbdcae4 https://www.encodeproject.org/files/ENCFF459DRJ/@@download/ENCFF459DRJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF981JMJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF459DRJ 897321 ENCODE Processing Pipeline 209e4f9d0942b760a6610147a4ef114c https://www.encodeproject.org/files/ENCFF981JMJ/@@download/ENCFF981JMJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000YYB bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 452721388 Michael Snyder, Stanford 67953e12b1fc038c413911229fb79c90 https://www.encodeproject.org/files/ENCFF000YYB/@@download/ENCFF000YYB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YYC bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VON 1363120 Michael Snyder, Stanford 878161f78ae00015c58531271243b710 https://www.encodeproject.org/files/ENCFF000YYC/@@download/ENCFF000YYC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YYD fastq reads ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 970850461 Michael Snyder, Stanford 34daf8ecbb8a189daac631d409e36249 https://www.encodeproject.org/files/ENCFF000YYD/@@download/ENCFF000YYD.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YYF fastq reads ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 408969102 Michael Snyder, Stanford 2e472c6f552700559ef86a02d75180a2 https://www.encodeproject.org/files/ENCFF000YYF/@@download/ENCFF000YYF.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YYG bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 567294678 Michael Snyder, Stanford 0d2a07f30aaec2c8159b4f3e480d350e https://www.encodeproject.org/files/ENCFF000YYG/@@download/ENCFF000YYG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YYK bigWig signal ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 382160354 Michael Snyder, Stanford d299cecee661b156a022b96fa7f26d7f https://www.encodeproject.org/files/ENCFF000YYK/@@download/ENCFF000YYK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VON bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 692673 Michael Snyder, Stanford ae84b26b09857dfc02444fcf70734f7e https://www.encodeproject.org/files/ENCFF001VON/@@download/ENCFF001VON.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CXV bed narrowPeak optimal idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 58297 ENCODE Consortium Analysis Working Group 84fc3a4909c0a97058659fbe659e0f55 https://www.encodeproject.org/files/ENCFF002CXV/@@download/ENCFF002CXV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YYI fastq reads ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 752905350 Michael Snyder, Stanford 685922e559ff843434f5014bdc64376d https://www.encodeproject.org/files/ENCFF000YYI/@@download/ENCFF000YYI.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF735RKE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXV 215885 ENCODE Consortium 8397fc3b310ff4dc3bed48d4f6325c97 https://www.encodeproject.org/files/ENCFF735RKE/@@download/ENCFF735RKE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF050AHY bam unfiltered alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YYD, ENCFF643CGH 1111494124 ENCODE Processing Pipeline ed8b524e3a3fafea2c20abab473d3a17 https://www.encodeproject.org/files/ENCFF050AHY/@@download/ENCFF050AHY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF230AXK bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YYD, ENCFF643CGH 673074017 ENCODE Processing Pipeline 97ddef74c908182c168ca023ac06abe3 https://www.encodeproject.org/files/ENCFF230AXK/@@download/ENCFF230AXK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF841IIA bam unfiltered alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YYF, ENCFF000YYI, ENCFF643CGH 1319597171 ENCODE Processing Pipeline b107a4b11ed571ade42c12c3d38911a7 https://www.encodeproject.org/files/ENCFF841IIA/@@download/ENCFF841IIA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF524SJJ bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YYF, ENCFF000YYI, ENCFF643CGH 831996692 ENCODE Processing Pipeline 932ce9033c058f65999d7cf311fab01e https://www.encodeproject.org/files/ENCFF524SJJ/@@download/ENCFF524SJJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF045DPH bam unfiltered alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YYD, ENCFF807MUK 1106426329 ENCODE Processing Pipeline f986941167fe5e70bd442abfaa32c86f https://www.encodeproject.org/files/ENCFF045DPH/@@download/ENCFF045DPH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF868YCY bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YYD, ENCFF807MUK 673472414 ENCODE Processing Pipeline 0c79ce8d46ae2a2a6aec04b611944630 https://www.encodeproject.org/files/ENCFF868YCY/@@download/ENCFF868YCY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF325VWA bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YYF, ENCFF000YYI, ENCFF807MUK 832546989 ENCODE Processing Pipeline 8c98fad8e45eaa30e7ffe1d628bc4669 https://www.encodeproject.org/files/ENCFF325VWA/@@download/ENCFF325VWA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF703AZV bam unfiltered alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YYF, ENCFF000YYI, ENCFF807MUK 1313838600 ENCODE Processing Pipeline 1ad1e2a0883e5a38bc7f0970c76325a0 https://www.encodeproject.org/files/ENCFF703AZV/@@download/ENCFF703AZV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF660TXA bigWig signal p-value ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF230AXK 402840325 ENCODE Processing Pipeline f85665a93ba927a783bcabed2021e442 https://www.encodeproject.org/files/ENCFF660TXA/@@download/ENCFF660TXA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF573KBS bigWig signal p-value ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF230AXK, ENCFF524SJJ 530639657 ENCODE Processing Pipeline 294eed076083f4d94f403e1a145f1888 https://www.encodeproject.org/files/ENCFF573KBS/@@download/ENCFF573KBS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF142DJS bigWig signal p-value ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF524SJJ 484257728 ENCODE Processing Pipeline bd880297b369057951773d88948a75f5 https://www.encodeproject.org/files/ENCFF142DJS/@@download/ENCFF142DJS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF163QMH bigWig fold change over control ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF230AXK 335777982 ENCODE Processing Pipeline 096bf7cb5384b84f177daa349e6f3389 https://www.encodeproject.org/files/ENCFF163QMH/@@download/ENCFF163QMH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF396PRO bigWig fold change over control ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF524SJJ 432598113 ENCODE Processing Pipeline 9706d5f62b65538e0a50d643e95f0e36 https://www.encodeproject.org/files/ENCFF396PRO/@@download/ENCFF396PRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF559GNS bigWig fold change over control ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF230AXK, ENCFF524SJJ 650848622 ENCODE Processing Pipeline e599c9d524769ef9e25fbf6ca02c7d3a https://www.encodeproject.org/files/ENCFF559GNS/@@download/ENCFF559GNS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF028BEG bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF230AXK 4463047 ENCODE Processing Pipeline ca85d454235eb712d2ee7c09e92e0927 https://www.encodeproject.org/files/ENCFF028BEG/@@download/ENCFF028BEG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF987EZQ bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF524SJJ 4812459 ENCODE Processing Pipeline ea7c20c17795878c5011679ea356c919 https://www.encodeproject.org/files/ENCFF987EZQ/@@download/ENCFF987EZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF194HRP bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF230AXK, ENCFF524SJJ 5609663 ENCODE Processing Pipeline 7c3760b175baeae2db0853c7e80a3d2e https://www.encodeproject.org/files/ENCFF194HRP/@@download/ENCFF194HRP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF436JKE bed narrowPeak conservative idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF028BEG, ENCFF194HRP, ENCFF419RSJ, ENCFF987EZQ 45311 ENCODE Processing Pipeline 87f9affef93e43fc5c69ec3cfdd62f9a https://www.encodeproject.org/files/ENCFF436JKE/@@download/ENCFF436JKE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF857SWW bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF028BEG 10726987 ENCODE Processing Pipeline 076ae28c1809beb9b6e2e655c22a08a8 https://www.encodeproject.org/files/ENCFF857SWW/@@download/ENCFF857SWW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF168FNI bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF194HRP 11253077 ENCODE Processing Pipeline 770aaa72833093c5f6d401fa879ac3b5 https://www.encodeproject.org/files/ENCFF168FNI/@@download/ENCFF168FNI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF201YKU bed narrowPeak optimal idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF028BEG, ENCFF194HRP, ENCFF419RSJ, ENCFF987EZQ 52141 ENCODE Processing Pipeline 65cdb837880f17e81c348718cbe89cdc https://www.encodeproject.org/files/ENCFF201YKU/@@download/ENCFF201YKU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF149AZS bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF987EZQ 11040684 ENCODE Processing Pipeline 5e73a15ca2b5e029ecbc6679f92cb8d8 https://www.encodeproject.org/files/ENCFF149AZS/@@download/ENCFF149AZS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF213UXP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436JKE 129497 ENCODE Processing Pipeline 44bff559fdc0f44b157461e7aaa1c31d https://www.encodeproject.org/files/ENCFF213UXP/@@download/ENCFF213UXP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364LMD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF201YKU 164078 ENCODE Processing Pipeline 74dd604667ef4705c4a886f0553eb358 https://www.encodeproject.org/files/ENCFF364LMD/@@download/ENCFF364LMD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF165HKU bigWig signal p-value ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF868YCY 403184112 ENCODE Processing Pipeline c689805713acddd634d12b4cf8eca4bd https://www.encodeproject.org/files/ENCFF165HKU/@@download/ENCFF165HKU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF227GXP bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF536YVV 10702385 ENCODE Processing Pipeline 84409ad6b6fe40460232fcd8ebb55468 https://www.encodeproject.org/files/ENCFF227GXP/@@download/ENCFF227GXP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716LRI bed narrowPeak optimal idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF066GNV, ENCFF439SZI, ENCFF536YVV 52639 ENCODE Processing Pipeline 175fa8254c3ee7f766ed461e264093dd https://www.encodeproject.org/files/ENCFF716LRI/@@download/ENCFF716LRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527UGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF716LRI 163950 ENCODE Processing Pipeline f89a64426b59f8add0711811e07c87f5 https://www.encodeproject.org/files/ENCFF527UGT/@@download/ENCFF527UGT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF754XPF bigWig signal p-value ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325VWA, ENCFF710NTS 482731778 ENCODE Processing Pipeline a4b4be371e4d0847d3a1dddf3b163c6f https://www.encodeproject.org/files/ENCFF754XPF/@@download/ENCFF754XPF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299FKZ bigWig fold change over control ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325VWA, ENCFF710NTS 430277182 ENCODE Processing Pipeline 8e66fb339e0b29dd6f2fbc8999d8d856 https://www.encodeproject.org/files/ENCFF299FKZ/@@download/ENCFF299FKZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF759LQL bigWig fold change over control ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325VWA, ENCFF710NTS, ENCFF868YCY 646995691 ENCODE Processing Pipeline 1a22958238d506ec30522e8f75ba7893 https://www.encodeproject.org/files/ENCFF759LQL/@@download/ENCFF759LQL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF606HXD bigWig fold change over control ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF868YCY 336442963 ENCODE Processing Pipeline ef434fd47395bdda80901a1002b673ef https://www.encodeproject.org/files/ENCFF606HXD/@@download/ENCFF606HXD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF536YVV bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF868YCY 4405762 ENCODE Processing Pipeline 2353777e3b8f76d67d0bf9af71a94f3d https://www.encodeproject.org/files/ENCFF536YVV/@@download/ENCFF536YVV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392KHS bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF439SZI 11035566 ENCODE Processing Pipeline 9bdcfd9edb6b2820c680cb3ff25ba20b https://www.encodeproject.org/files/ENCFF392KHS/@@download/ENCFF392KHS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145PCR bigBed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF066GNV 11248334 ENCODE Processing Pipeline 13861a3002c3669fb4c5edfcf5529f98 https://www.encodeproject.org/files/ENCFF145PCR/@@download/ENCFF145PCR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF738IGV bigWig signal p-value ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325VWA, ENCFF710NTS, ENCFF868YCY 528966041 ENCODE Processing Pipeline 5c69e059888a2ed2f05c70b6961154c6 https://www.encodeproject.org/files/ENCFF738IGV/@@download/ENCFF738IGV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF581CEN bed narrowPeak conservative idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF066GNV, ENCFF439SZI, ENCFF536YVV 45085 ENCODE Processing Pipeline 200f0fa3922bb4ee512042a7cd5730e2 https://www.encodeproject.org/files/ENCFF581CEN/@@download/ENCFF581CEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF439SZI bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325VWA, ENCFF710NTS 4815522 ENCODE Processing Pipeline 10145ccca4d460e694c04cd4cb50c12e https://www.encodeproject.org/files/ENCFF439SZI/@@download/ENCFF439SZI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF066GNV bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325VWA, ENCFF710NTS, ENCFF868YCY 5615665 ENCODE Processing Pipeline ecefb6d16a3485a1f3c69a4ec816e60c https://www.encodeproject.org/files/ENCFF066GNV/@@download/ENCFF066GNV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF058VMS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF581CEN 128334 ENCODE Processing Pipeline 0fe3bcf165a082a41474fb2ff9b1c8a4 https://www.encodeproject.org/files/ENCFF058VMS/@@download/ENCFF058VMS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HCD bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCR 411717907 John Stamatoyannopoulos, UW e749803a8d6e1c63d768db2334d9c35d https://www.encodeproject.org/files/ENCFF001HCD/@@download/ENCFF001HCD.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCE bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HCQ 511031524 John Stamatoyannopoulos, UW 71dbc9799e853cd0ef4dce60639e456d https://www.encodeproject.org/files/ENCFF001HCE/@@download/ENCFF001HCE.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCF bigBed broadPeak hotspots ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XNL 3722183 John Stamatoyannopoulos, UW 84d7a1088a5b592a71221655e8093ca9 https://www.encodeproject.org/files/ENCFF001HCF/@@download/ENCFF001HCF.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCG bigBed broadPeak hotspots ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XNM 3078720 John Stamatoyannopoulos, UW ae496e5fe2f1bad384c2adb98ab20108 https://www.encodeproject.org/files/ENCFF001HCG/@@download/ENCFF001HCG.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCH bigBed broadPeak hotspots ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001XNN 2915942 John Stamatoyannopoulos, UW 1d3958d3f0895f592f8bab6da5e1ee77 https://www.encodeproject.org/files/ENCFF001HCH/@@download/ENCFF001HCH.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCI bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XNO 996113 John Stamatoyannopoulos, UW e5ef40bae5ca4250315c87d3604bdd2f https://www.encodeproject.org/files/ENCFF001HCI/@@download/ENCFF001HCI.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCJ bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XNP 1014040 John Stamatoyannopoulos, UW 2a0068d45185b3ea525e6ed186a5cfc1 https://www.encodeproject.org/files/ENCFF001HCJ/@@download/ENCFF001HCJ.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCK bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001XNQ 834494 John Stamatoyannopoulos, UW 6800f250dd8aabe6b19d081ec4c286ed https://www.encodeproject.org/files/ENCFF001HCK/@@download/ENCFF001HCK.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCL bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HCS 631681293 John Stamatoyannopoulos, UW 1ad91453c62c2a2ce3aa99e13896c04d https://www.encodeproject.org/files/ENCFF001HCL/@@download/ENCFF001HCL.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCN bigWig raw signal ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HCE 81315104 John Stamatoyannopoulos, UW 29ba05662d61c512e0828e2301cbd9fd https://www.encodeproject.org/files/ENCFF001HCN/@@download/ENCFF001HCN.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCO bigWig raw signal ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCD 86735341 John Stamatoyannopoulos, UW ece4c337d555f1e842be1626913b085d https://www.encodeproject.org/files/ENCFF001HCO/@@download/ENCFF001HCO.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCP bigWig raw signal ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HCL 138232633 John Stamatoyannopoulos, UW ae53633c7b8183057d5f1004f5a3a3e7 https://www.encodeproject.org/files/ENCFF001HCP/@@download/ENCFF001HCP.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCQ fastq reads ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 660506732 John Stamatoyannopoulos, UW a946743f110d10a7e489e8af32957c3b https://www.encodeproject.org/files/ENCFF001HCQ/@@download/ENCFF001HCQ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HDF/ archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCR fastq reads ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 485180935 John Stamatoyannopoulos, UW e14c03e3602b66897a03f2aa24d7e14d https://www.encodeproject.org/files/ENCFF001HCR/@@download/ENCFF001HCR.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HDF/ released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001HCS fastq reads ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 1 36 single-ended 667673945 John Stamatoyannopoulos, UW 94dfbbd9115b782b84de87e65a2a20a4 https://www.encodeproject.org/files/ENCFF001HCS/@@download/ENCFF001HCS.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HDF/ released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNL bed broadPeak hotspots ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HCE 2649300 John Stamatoyannopoulos, UW d0700c581c124931f833a4aa5b147e32 https://www.encodeproject.org/files/ENCFF001XNL/@@download/ENCFF001XNL.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNM bed broadPeak hotspots ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCD 2176591 John Stamatoyannopoulos, UW f3db6136f5cffecfe14060bcf7a1cf10 https://www.encodeproject.org/files/ENCFF001XNM/@@download/ENCFF001XNM.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNN bed broadPeak hotspots ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HCL 1906115 John Stamatoyannopoulos, UW 0bbf987123a15393e99913e2712539b6 https://www.encodeproject.org/files/ENCFF001XNN/@@download/ENCFF001XNN.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNO bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HCE 699141 John Stamatoyannopoulos, UW a0575ca4bd7aac05956a8d075a85f88f https://www.encodeproject.org/files/ENCFF001XNO/@@download/ENCFF001XNO.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNP bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCD 710634 John Stamatoyannopoulos, UW d4750ee3f7d12f52db88190563f13230 https://www.encodeproject.org/files/ENCFF001XNP/@@download/ENCFF001XNP.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001XNQ bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF001HCL 554691 John Stamatoyannopoulos, UW 1f15751628dbcfc75b685eb0466bbaf4 https://www.encodeproject.org/files/ENCFF001XNQ/@@download/ENCFF001XNQ.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF002DCH bed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF001HCD, ENCFF001HCE, ENCFF001HCL 921051 ENCODE Consortium Analysis Working Group 0c6742bbbd8830e32e485a7b43f857a5 https://www.encodeproject.org/files/ENCFF002DCH/@@download/ENCFF002DCH.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF659UZN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2, 3 ENCFF002DCH 1920532 ENCODE Consortium 4dac92d4d79c7330018a8291808c37a9 https://www.encodeproject.org/files/ENCFF659UZN/@@download/ENCFF659UZN.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF538WFV bam unfiltered alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCR, ENCFF643CGH 553656356 ENCODE Processing Pipeline a8a757ba5239dc7befd3636a23f80bb9 https://www.encodeproject.org/files/ENCFF538WFV/@@download/ENCFF538WFV.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF694NDZ bam unfiltered alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCS, ENCFF643CGH 807969111 ENCODE Processing Pipeline a3ef0e4c6286305470a6bbf399163335 https://www.encodeproject.org/files/ENCFF694NDZ/@@download/ENCFF694NDZ.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF371RXH bam unfiltered alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HCQ, ENCFF643CGH 712334903 ENCODE Processing Pipeline 8a3e4b96f863c603a9e0c1c9fcde98fd https://www.encodeproject.org/files/ENCFF371RXH/@@download/ENCFF371RXH.bam GRCh38 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF273ZVE bam unfiltered alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCR, ENCFF807MUK 552337078 ENCODE Processing Pipeline b8a29667afa2447a4ec83508a50f02e6 https://www.encodeproject.org/files/ENCFF273ZVE/@@download/ENCFF273ZVE.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF869KZJ bam unfiltered alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HCQ, ENCFF807MUK 710056815 ENCODE Processing Pipeline 01ed9088f282ee41d704b0250297fd48 https://www.encodeproject.org/files/ENCFF869KZJ/@@download/ENCFF869KZJ.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF050NAU bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HCQ, ENCFF643CGH 300559579 ENCODE Processing Pipeline 06e8e00403804f575d240775d034a72f https://www.encodeproject.org/files/ENCFF050NAU/@@download/ENCFF050NAU.bam GRCh38 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF344MAW bam unfiltered alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCS, ENCFF807MUK 804279609 ENCODE Processing Pipeline 80e0b3ff62118eb39ac174121741f9fb https://www.encodeproject.org/files/ENCFF344MAW/@@download/ENCFF344MAW.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF383IOB bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCR, ENCFF643CGH 364236391 ENCODE Processing Pipeline a40dc92b6dcfd40cf1a8f0c957b945c8 https://www.encodeproject.org/files/ENCFF383IOB/@@download/ENCFF383IOB.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF683FXB bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCR, ENCFF807MUK 364004540 ENCODE Processing Pipeline ee713e8e34d843ce70266dc2fa2f428b https://www.encodeproject.org/files/ENCFF683FXB/@@download/ENCFF683FXB.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF766ZRA bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HCQ, ENCFF807MUK 300222825 ENCODE Processing Pipeline e6bd642da9be1c9dbdadd2fc99dcb015 https://www.encodeproject.org/files/ENCFF766ZRA/@@download/ENCFF766ZRA.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF655BNX bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCS, ENCFF643CGH 574513925 ENCODE Processing Pipeline 2150f383edd10e9caf96d36c68179b38 https://www.encodeproject.org/files/ENCFF655BNX/@@download/ENCFF655BNX.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF515ILZ bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCS, ENCFF807MUK 574312748 ENCODE Processing Pipeline ca84d7cfa15d079d78c6cbde2520460c https://www.encodeproject.org/files/ENCFF515ILZ/@@download/ENCFF515ILZ.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF809GCO bigWig signal p-value ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF383IOB 296578806 ENCODE Processing Pipeline c311e257df4adaedef0756b1e8bd1449 https://www.encodeproject.org/files/ENCFF809GCO/@@download/ENCFF809GCO.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF389WRY bigWig fold change over control ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF383IOB 134922782 ENCODE Processing Pipeline f9ae4fcab067ad3593fe290a0d4e24e9 https://www.encodeproject.org/files/ENCFF389WRY/@@download/ENCFF389WRY.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF252OMP bigWig signal p-value ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF655BNX 289768987 ENCODE Processing Pipeline 613ac4c53a269bbd843b39f3cf00e98b https://www.encodeproject.org/files/ENCFF252OMP/@@download/ENCFF252OMP.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF063FXE bigWig signal p-value ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF383IOB, ENCFF655BNX 313604904 ENCODE Processing Pipeline dffa31a1b2f69df0800003f5d65baf1b https://www.encodeproject.org/files/ENCFF063FXE/@@download/ENCFF063FXE.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF042QJV bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF655BNX 3927469 ENCODE Processing Pipeline 7ac3fbc57236f4c68a3da39a73f177d2 https://www.encodeproject.org/files/ENCFF042QJV/@@download/ENCFF042QJV.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF614IEF bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF383IOB, ENCFF655BNX 1580693 ENCODE Processing Pipeline dc94468f8aff3036d7afe2306efab541 https://www.encodeproject.org/files/ENCFF614IEF/@@download/ENCFF614IEF.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF293PUO bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF987PPW 4596265 ENCODE Processing Pipeline a9ef6196350e70c1e3cfc3a4d754d5c6 https://www.encodeproject.org/files/ENCFF293PUO/@@download/ENCFF293PUO.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF239ZJD bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF042QJV 7991132 ENCODE Processing Pipeline a6053b9ce3b5402d12e579e205eba69e https://www.encodeproject.org/files/ENCFF239ZJD/@@download/ENCFF239ZJD.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF221YJU bigWig fold change over control ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF655BNX 234654351 ENCODE Processing Pipeline c8764ae2e56e23b87a84fa255bbd3535 https://www.encodeproject.org/files/ENCFF221YJU/@@download/ENCFF221YJU.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF987PPW bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF383IOB 2196160 ENCODE Processing Pipeline 951ac5964638a33135c15d81d2636d87 https://www.encodeproject.org/files/ENCFF987PPW/@@download/ENCFF987PPW.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF735IEO bed narrowPeak conservative idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF042QJV, ENCFF419RSJ, ENCFF614IEF, ENCFF987PPW 612461 ENCODE Processing Pipeline 70cd4fd783b7ae419ce88c16f6fbaf5b https://www.encodeproject.org/files/ENCFF735IEO/@@download/ENCFF735IEO.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF877TNV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF735IEO 1157088 ENCODE Processing Pipeline 7f35f657769264a7078f4e50d38a9dfb https://www.encodeproject.org/files/ENCFF877TNV/@@download/ENCFF877TNV.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF965YZI bed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF042QJV, ENCFF419RSJ, ENCFF614IEF, ENCFF987PPW 630836 ENCODE Processing Pipeline 941a8a409acd3664e72b358da282ea06 https://www.encodeproject.org/files/ENCFF965YZI/@@download/ENCFF965YZI.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF124YZT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF965YZI 1181709 ENCODE Processing Pipeline 7cd353f25167023ff1fa7493f3fd81a3 https://www.encodeproject.org/files/ENCFF124YZT/@@download/ENCFF124YZT.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF029MQA bigWig fold change over control ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF593BXM, ENCFF683FXB 134278553 ENCODE Processing Pipeline 8fed4c59e5aa07f3ca53d5a2c2211a75 https://www.encodeproject.org/files/ENCFF029MQA/@@download/ENCFF029MQA.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF676FHP bigWig fold change over control ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF383IOB, ENCFF655BNX 341317323 ENCODE Processing Pipeline a9e2b687c658c24ad7b7e4c45b0861ca https://www.encodeproject.org/files/ENCFF676FHP/@@download/ENCFF676FHP.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF840DIR bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF614IEF 3227579 ENCODE Processing Pipeline 6b59fda92cb9a5646762028a66fb85c0 https://www.encodeproject.org/files/ENCFF840DIR/@@download/ENCFF840DIR.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF403EQC bigWig signal p-value ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF593BXM, ENCFF683FXB 295294480 ENCODE Processing Pipeline bbc603890d9600963ee6fcad0ea3df6d https://www.encodeproject.org/files/ENCFF403EQC/@@download/ENCFF403EQC.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF397MYI bigWig fold change over control ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF515ILZ, ENCFF593BXM 234806254 ENCODE Processing Pipeline 26467b38094b06cfa01ba62a7654aef9 https://www.encodeproject.org/files/ENCFF397MYI/@@download/ENCFF397MYI.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF314YRS bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF583NIC 3137047 ENCODE Processing Pipeline 50822ffbe5a5995878afafa353e56bb7 https://www.encodeproject.org/files/ENCFF314YRS/@@download/ENCFF314YRS.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF132AJR bed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF001TDO, ENCFF109JHW, ENCFF583NIC, ENCFF867NAA 606092 ENCODE Processing Pipeline c933cf05e523d56a4937c4b313fc01ea https://www.encodeproject.org/files/ENCFF132AJR/@@download/ENCFF132AJR.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF575PTY bigWig fold change over control ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF515ILZ, ENCFF593BXM, ENCFF683FXB 337097586 ENCODE Processing Pipeline db54f1e90c3bc06511a2b29831aa26f1 https://www.encodeproject.org/files/ENCFF575PTY/@@download/ENCFF575PTY.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF105YLQ bed narrowPeak conservative idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF001TDO, ENCFF109JHW, ENCFF583NIC, ENCFF867NAA 588282 ENCODE Processing Pipeline f3d8e2929486e33c7751a8b8262b333f https://www.encodeproject.org/files/ENCFF105YLQ/@@download/ENCFF105YLQ.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF471GEI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF105YLQ 1111292 ENCODE Processing Pipeline 9a33bbfa22b2a5ff7f2fb817360bf8e6 https://www.encodeproject.org/files/ENCFF471GEI/@@download/ENCFF471GEI.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF038CNA bigWig signal p-value ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF515ILZ, ENCFF593BXM 289650759 ENCODE Processing Pipeline 2114f33a2adb9e4090ad1380bde8b280 https://www.encodeproject.org/files/ENCFF038CNA/@@download/ENCFF038CNA.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF109JHW bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF593BXM, ENCFF683FXB 2147125 ENCODE Processing Pipeline a1d48b4c1e08a2527a94ea40dabc8d88 https://www.encodeproject.org/files/ENCFF109JHW/@@download/ENCFF109JHW.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF940KTP bigWig signal p-value ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF515ILZ, ENCFF593BXM, ENCFF683FXB 313428078 ENCODE Processing Pipeline 25fa5c97fc78fa8c52e4c635b1206bfc https://www.encodeproject.org/files/ENCFF940KTP/@@download/ENCFF940KTP.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF583NIC bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF515ILZ, ENCFF593BXM, ENCFF683FXB 1517971 ENCODE Processing Pipeline 98c06d9c14b192df200ce7fd4ed290f1 https://www.encodeproject.org/files/ENCFF583NIC/@@download/ENCFF583NIC.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF912CLI bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF109JHW 4503887 ENCODE Processing Pipeline e9dc8b61d9c9d5c2f9de7f29acdfe93a https://www.encodeproject.org/files/ENCFF912CLI/@@download/ENCFF912CLI.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF897ABV bigBed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF867NAA 7967322 ENCODE Processing Pipeline 5f46cceb9ef063b3c55b7ff9469d8507 https://www.encodeproject.org/files/ENCFF897ABV/@@download/ENCFF897ABV.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF815OXX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2, 3 ENCFF132AJR 1134624 ENCODE Processing Pipeline 071a17ef7948a62925597424dfff5203 https://www.encodeproject.org/files/ENCFF815OXX/@@download/ENCFF815OXX.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF867NAA bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF515ILZ, ENCFF593BXM 3912675 ENCODE Processing Pipeline a1e14c08c716b6c9b0a151fc8359ffbf https://www.encodeproject.org/files/ENCFF867NAA/@@download/ENCFF867NAA.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF000RNM bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000ROI 977449682 Vishwanath Iyer, UTA e2638dbe756ffb85635af279bd27882d https://www.encodeproject.org/files/ENCFF000RNM/@@download/ENCFF000RNM.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RNN bigWig base overlap signal ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1127700890 Vishwanath Iyer, UTA 8c78183239dc6ed65bd794cc374814f4 https://www.encodeproject.org/files/ENCFF000RNN/@@download/ENCFF000RNN.bigWig hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RNO bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RNU 552116951 Vishwanath Iyer, UTA 296a37a4726d5945b9e356d91615f0ee https://www.encodeproject.org/files/ENCFF000RNO/@@download/ENCFF000RNO.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RNP bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001USE 2272280 Vishwanath Iyer, UTA 8491859c57cb02287bfb27fd03da0fc0 https://www.encodeproject.org/files/ENCFF000RNP/@@download/ENCFF000RNP.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RNR bigWig signal ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 4455804326 Vishwanath Iyer, UTA 839dd902de3857ad37d8ea3fed4fc698 https://www.encodeproject.org/files/ENCFF000RNR/@@download/ENCFF000RNR.bigWig hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RNU fastq reads ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 583647774 Vishwanath Iyer, UTA 402583baf1ba989b1c92fc5b522e72a5 https://www.encodeproject.org/files/ENCFF000RNU/@@download/ENCFF000RNU.fastq.gz Illumina Genome Analyzer /files/ENCFF000ROO/ released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000ROI fastq reads ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 1956253362 Vishwanath Iyer, UTA 5776535cfda454ba0b890622d10018e7 https://www.encodeproject.org/files/ENCFF000ROI/@@download/ENCFF000ROI.fastq.gz Illumina Genome Analyzer /files/ENCFF000ROO/ released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF001USE bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1381266 Vishwanath Iyer, UTA 285966ae09ce968994fae18e23a07669 https://www.encodeproject.org/files/ENCFF001USE/@@download/ENCFF001USE.bed.gz hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF191UVC bam unfiltered alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RNU, ENCFF643CGH 673047392 ENCODE Processing Pipeline f004d7673523ede7a0e5f7b391d38ed8 https://www.encodeproject.org/files/ENCFF191UVC/@@download/ENCFF191UVC.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF505IMK bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RNU, ENCFF643CGH 415909374 ENCODE Processing Pipeline e414cf309e4fab2d8ccd6da4f2b360eb https://www.encodeproject.org/files/ENCFF505IMK/@@download/ENCFF505IMK.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF261WFK bam unfiltered alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROI, ENCFF643CGH 2190918557 ENCODE Processing Pipeline 4e81d80c907b8cd69700b1eacf2e1c00 https://www.encodeproject.org/files/ENCFF261WFK/@@download/ENCFF261WFK.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF107SFO bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROI, ENCFF643CGH 737241895 ENCODE Processing Pipeline 822fe781483acc9b1d2225c0f120eda8 https://www.encodeproject.org/files/ENCFF107SFO/@@download/ENCFF107SFO.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF333JQK bam unfiltered alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RNU, ENCFF807MUK 671253237 ENCODE Processing Pipeline e2e444e83ddeca1ed0390b26e2aab8ea https://www.encodeproject.org/files/ENCFF333JQK/@@download/ENCFF333JQK.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF666BHZ bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RNU, ENCFF807MUK 414658480 ENCODE Processing Pipeline 7b9ad4bedad40859318e10ceeca47b73 https://www.encodeproject.org/files/ENCFF666BHZ/@@download/ENCFF666BHZ.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF606NRM bigWig fold change over control ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF107SFO, ENCFF505IMK 242454420 ENCODE Processing Pipeline c41ffd55e9af4a88e73a3800766fc1d2 https://www.encodeproject.org/files/ENCFF606NRM/@@download/ENCFF606NRM.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF076VOL bam unfiltered alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROI, ENCFF807MUK 2185849096 ENCODE Processing Pipeline f5cba7c9f63e645ed6db623e0513e37f https://www.encodeproject.org/files/ENCFF076VOL/@@download/ENCFF076VOL.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF531PKS bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROI, ENCFF807MUK 735790573 ENCODE Processing Pipeline 46a1381cbbd4098c6126caa2fce7c2dd https://www.encodeproject.org/files/ENCFF531PKS/@@download/ENCFF531PKS.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF512SWU bigWig fold change over control ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF107SFO 164230038 ENCODE Processing Pipeline 46f2e3dbc56a570374949db3284016a5 https://www.encodeproject.org/files/ENCFF512SWU/@@download/ENCFF512SWU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF533JMH bigWig signal p-value ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF505IMK 80589345 ENCODE Processing Pipeline 31a3debadd4c36aeb6b9a1129fb49c6c https://www.encodeproject.org/files/ENCFF533JMH/@@download/ENCFF533JMH.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF876ABF bigWig fold change over control ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF505IMK 92125043 ENCODE Processing Pipeline f4b1886e400b01668d7aaaafa109f89d https://www.encodeproject.org/files/ENCFF876ABF/@@download/ENCFF876ABF.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF085HYY bigWig signal p-value ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF107SFO, ENCFF505IMK 73524559 ENCODE Processing Pipeline c14561d6011b351e639cc47fc004d50e https://www.encodeproject.org/files/ENCFF085HYY/@@download/ENCFF085HYY.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF694TTD bigWig signal p-value ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF107SFO 76648518 ENCODE Processing Pipeline 9825559357844725750b7da593da57c0 https://www.encodeproject.org/files/ENCFF694TTD/@@download/ENCFF694TTD.bigWig GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF359RRS bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF505IMK 2296518 ENCODE Processing Pipeline d3394e7c95621a3011530fd20caede75 https://www.encodeproject.org/files/ENCFF359RRS/@@download/ENCFF359RRS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF986IZP bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF107SFO 3546979 ENCODE Processing Pipeline 8451efe65542684ad148f7676a23444c https://www.encodeproject.org/files/ENCFF986IZP/@@download/ENCFF986IZP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF226VLZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF611FVS 1029742 ENCODE Processing Pipeline 06d0391ebe8769f47f912355a60be176 https://www.encodeproject.org/files/ENCFF226VLZ/@@download/ENCFF226VLZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF322XCW bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF359RRS 3951533 ENCODE Processing Pipeline 8cfa5072e2ab4a9168e65a9a2193511b https://www.encodeproject.org/files/ENCFF322XCW/@@download/ENCFF322XCW.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF611FVS bed narrowPeak optimal idr thresholded peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF359RRS, ENCFF419RSJ, ENCFF651ELF, ENCFF986IZP 557310 ENCODE Processing Pipeline b7fe09d39caf4881b6d0ea6952b28432 https://www.encodeproject.org/files/ENCFF611FVS/@@download/ENCFF611FVS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF651ELF bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF107SFO, ENCFF505IMK 3724688 ENCODE Processing Pipeline 526940b5c8161639cc55a3816fbd967c https://www.encodeproject.org/files/ENCFF651ELF/@@download/ENCFF651ELF.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF465ZRA bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF651ELF 7576467 ENCODE Processing Pipeline 0a4c9484dd0d94bdf8d5418892426316 https://www.encodeproject.org/files/ENCFF465ZRA/@@download/ENCFF465ZRA.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF663KPZ bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF986IZP 7184345 ENCODE Processing Pipeline e441972fd3fc8933a197584951617aa1 https://www.encodeproject.org/files/ENCFF663KPZ/@@download/ENCFF663KPZ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF968OZV bigWig signal p-value ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF384QVL, ENCFF531PKS 76533395 ENCODE Processing Pipeline 44b1ccb4773bb403d10e4264f6a94598 https://www.encodeproject.org/files/ENCFF968OZV/@@download/ENCFF968OZV.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF959RCH bigWig fold change over control ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF384QVL, ENCFF531PKS 162439433 ENCODE Processing Pipeline 69ec93fe70fe06fe9c63b4a67fdac83b https://www.encodeproject.org/files/ENCFF959RCH/@@download/ENCFF959RCH.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF949OKS bigWig signal p-value ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF384QVL, ENCFF666BHZ 80496585 ENCODE Processing Pipeline ff2974908b8513c53feba774c80e5c1c https://www.encodeproject.org/files/ENCFF949OKS/@@download/ENCFF949OKS.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF960WJE bigWig signal p-value ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF384QVL, ENCFF531PKS, ENCFF666BHZ 73432364 ENCODE Processing Pipeline 38b3765f1db951bceef6d65b10793f35 https://www.encodeproject.org/files/ENCFF960WJE/@@download/ENCFF960WJE.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF404WPZ bigWig fold change over control ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF384QVL, ENCFF666BHZ 91837415 ENCODE Processing Pipeline dce332a77dcb5fb9f9800f591f9053f3 https://www.encodeproject.org/files/ENCFF404WPZ/@@download/ENCFF404WPZ.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF540PLB bigWig fold change over control ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF384QVL, ENCFF531PKS, ENCFF666BHZ 241008362 ENCODE Processing Pipeline 69d3e4ec5d06507e1dae503877157cdf https://www.encodeproject.org/files/ENCFF540PLB/@@download/ENCFF540PLB.bigWig hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF251JON bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF384QVL, ENCFF531PKS 3572878 ENCODE Processing Pipeline 6936922484264644e8d91f08d0c8ad1d https://www.encodeproject.org/files/ENCFF251JON/@@download/ENCFF251JON.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF049XKA bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF384QVL, ENCFF666BHZ 2854269 ENCODE Processing Pipeline adfd22125195df800a1212c8a381ec51 https://www.encodeproject.org/files/ENCFF049XKA/@@download/ENCFF049XKA.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF927PCL bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF384QVL, ENCFF531PKS, ENCFF666BHZ 3719410 ENCODE Processing Pipeline 8ad138ada1b8cc65c31b70f841bec445 https://www.encodeproject.org/files/ENCFF927PCL/@@download/ENCFF927PCL.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF229FMZ bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF251JON 7216960 ENCODE Processing Pipeline 0900f81ff3b76608c733c3b2c15a970e https://www.encodeproject.org/files/ENCFF229FMZ/@@download/ENCFF229FMZ.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF743QRQ bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF049XKA 4715368 ENCODE Processing Pipeline 38486d1e9e3e688eed67606eea01b8da https://www.encodeproject.org/files/ENCFF743QRQ/@@download/ENCFF743QRQ.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF230STG bigBed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF927PCL 7565981 ENCODE Processing Pipeline fb5af2fa59a08ca5004dafea04fb44cb https://www.encodeproject.org/files/ENCFF230STG/@@download/ENCFF230STG.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF210PLK bed narrowPeak optimal idr thresholded peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF049XKA, ENCFF251JON, ENCFF927PCL 563417 ENCODE Processing Pipeline e0ba950f98c4bcacedd5503af90fa466 https://www.encodeproject.org/files/ENCFF210PLK/@@download/ENCFF210PLK.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF203KCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF210PLK 1041282 ENCODE Processing Pipeline f5dfe7c2f6e3acf0fde40848e2b655a0 https://www.encodeproject.org/files/ENCFF203KCS/@@download/ENCFF203KCS.bigBed hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000PTB bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PTO 1444872272 Richard Myers, HAIB 91c5bbed5a9cb81b160c7cf89844e83f https://www.encodeproject.org/files/ENCFF000PTB/@@download/ENCFF000PTB.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000PTC bigBed broadPeak peaks ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UII 96601 Richard Myers, HAIB d460a99e1c546b98ad551afad399ffd5 https://www.encodeproject.org/files/ENCFF000PTC/@@download/ENCFF000PTC.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000PTD bigBed broadPeak peaks ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UIJ 80739 Richard Myers, HAIB 147f0d76be75c62ff8e12cf84e5c7385 https://www.encodeproject.org/files/ENCFF000PTD/@@download/ENCFF000PTD.bigBed hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000PTE bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PTQ 1376808865 Richard Myers, HAIB cc7629e8f75b819dcbc14be2dfb4f430 https://www.encodeproject.org/files/ENCFF000PTE/@@download/ENCFF000PTE.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000PTG bigWig raw signal ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 188469836 Richard Myers, HAIB 5d1ac210da54d1cba12884ff4089d718 https://www.encodeproject.org/files/ENCFF000PTG/@@download/ENCFF000PTG.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from, NTR biosample ENCFF000PTH bigWig raw signal ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 128959245 Richard Myers, HAIB b468fc03a119bf35d669227a84d2fdea https://www.encodeproject.org/files/ENCFF000PTH/@@download/ENCFF000PTH.bigWig hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from, NTR biosample ENCFF000PTO fastq reads ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1515832606 Richard Myers, HAIB 55f98768b22c137f306c3676e4855d9c https://www.encodeproject.org/files/ENCFF000PTO/@@download/ENCFF000PTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPF/ released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000PTQ fastq reads ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1436379933 Richard Myers, HAIB d857ef36f11bccef76f1e258ef086548 https://www.encodeproject.org/files/ENCFF000PTQ/@@download/ENCFF000PTQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPI/ released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF001UII bed broadPeak peaks ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 31982 Richard Myers, HAIB 44f09b7529a88ed64043e8b3604d4f24 https://www.encodeproject.org/files/ENCFF001UII/@@download/ENCFF001UII.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from, NTR biosample ENCFF001UIJ bed broadPeak peaks ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 25389 Richard Myers, HAIB 8e78d4a128a9f1be4d99669f4d10b68b https://www.encodeproject.org/files/ENCFF001UIJ/@@download/ENCFF001UIJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from, NTR biosample ENCFF839CKS bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTQ, ENCFF643CGH 928811695 ENCODE Processing Pipeline 903d5fc8994fcaf4f6a58e9110b639c3 https://www.encodeproject.org/files/ENCFF839CKS/@@download/ENCFF839CKS.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF004UUX bam unfiltered alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTO, ENCFF807MUK 1555405908 ENCODE Processing Pipeline d1de98083da56efca9885d03b08ee7de https://www.encodeproject.org/files/ENCFF004UUX/@@download/ENCFF004UUX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF810DCX bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTQ, ENCFF807MUK 928976986 ENCODE Processing Pipeline 4bb07ccb5b7248581dc1fbc738633c32 https://www.encodeproject.org/files/ENCFF810DCX/@@download/ENCFF810DCX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF852SQJ bam unfiltered alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTQ, ENCFF643CGH 1467465899 ENCODE Processing Pipeline e9e2ecca981997519b6ac23cfd3a8ee7 https://www.encodeproject.org/files/ENCFF852SQJ/@@download/ENCFF852SQJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF057ARS bam unfiltered alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTQ, ENCFF807MUK 1464275315 ENCODE Processing Pipeline 2c7d8ff0ba10ab445a51aa4939a3074d https://www.encodeproject.org/files/ENCFF057ARS/@@download/ENCFF057ARS.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF114RUT bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTO, ENCFF807MUK 1088844899 ENCODE Processing Pipeline a5e91d56db23db99f5dc32dfb86b7016 https://www.encodeproject.org/files/ENCFF114RUT/@@download/ENCFF114RUT.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF425JKK bam unfiltered alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTO, ENCFF643CGH 1557795520 ENCODE Processing Pipeline 9f5c7bf6e5e6981d051bd16af2ce013d https://www.encodeproject.org/files/ENCFF425JKK/@@download/ENCFF425JKK.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF181VQE bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTO, ENCFF643CGH 1088567112 ENCODE Processing Pipeline ddf620aed437a4f36a1a8be529357e08 https://www.encodeproject.org/files/ENCFF181VQE/@@download/ENCFF181VQE.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000ZIV bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZJG 455207184 Kevin Struhl, HMS cb640765e335c3bbda35a2bc275f3e9f https://www.encodeproject.org/files/ENCFF000ZIV/@@download/ENCFF000ZIV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000ZIW bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZJH 463868670 Kevin Struhl, HMS 55e76ad61b8240e314de74e26dde6ae9 https://www.encodeproject.org/files/ENCFF000ZIW/@@download/ENCFF000ZIW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000ZIX bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPZ 7557477 Kevin Struhl, HMS 5a0c1582be91b4682e72bba217d2a878 https://www.encodeproject.org/files/ENCFF000ZIX/@@download/ENCFF000ZIX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000ZJB bigWig signal ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 255217265 Kevin Struhl, HMS e0112ab4a82a4b267f39655726a271d9 https://www.encodeproject.org/files/ENCFF000ZJB/@@download/ENCFF000ZJB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF000ZJG fastq reads ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1201914588 Kevin Struhl, HMS bb87caa446669b92090afbecacf5416a https://www.encodeproject.org/files/ENCFF000ZJG/@@download/ENCFF000ZJG.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000ZJH fastq reads ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1148778635 Kevin Struhl, HMS ef267c2f653426019b25514b70b5a8af https://www.encodeproject.org/files/ENCFF000ZJH/@@download/ENCFF000ZJH.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF001VPZ bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4242825 Kevin Struhl, HMS 1ecb64743a17f6b8cb973486c3287587 https://www.encodeproject.org/files/ENCFF001VPZ/@@download/ENCFF001VPZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample severe bottlenecking ENCFF002CZD bed narrowPeak optimal idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 405977 ENCODE Consortium Analysis Working Group 08839c9712a46f3c8dba5a362fd08e48 https://www.encodeproject.org/files/ENCFF002CZD/@@download/ENCFF002CZD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from severe bottlenecking ENCFF596DMV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZD 1202391 ENCODE Consortium cf3862845350846b81a94ef8ac94abd8 https://www.encodeproject.org/files/ENCFF596DMV/@@download/ENCFF596DMV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF381LYV bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJH, ENCFF643CGH 525310519 ENCODE Processing Pipeline 96cba2665f08997fa4f908873126fee6 https://www.encodeproject.org/files/ENCFF381LYV/@@download/ENCFF381LYV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF865WIG bam unfiltered alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJH, ENCFF643CGH 1223037791 ENCODE Processing Pipeline cedf658d51e1d39356751da312604bf0 https://www.encodeproject.org/files/ENCFF865WIG/@@download/ENCFF865WIG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF272ZRF bam unfiltered alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJG, ENCFF643CGH 1270016292 ENCODE Processing Pipeline 09c02a689f9a464b07a8f0c78ae706c0 https://www.encodeproject.org/files/ENCFF272ZRF/@@download/ENCFF272ZRF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF587SXK bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJG, ENCFF643CGH 507809687 ENCODE Processing Pipeline ff67fa079586dce383fcb28b92690101 https://www.encodeproject.org/files/ENCFF587SXK/@@download/ENCFF587SXK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF286AAG bam unfiltered alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJH, ENCFF807MUK 1218693881 ENCODE Processing Pipeline 557f2788e5e867a587fa9cafc3adbbc3 https://www.encodeproject.org/files/ENCFF286AAG/@@download/ENCFF286AAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF295MSS bam unfiltered alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJG, ENCFF807MUK 1265154939 ENCODE Processing Pipeline 1ebf4cec6c73e2eb20ca21860a5e2410 https://www.encodeproject.org/files/ENCFF295MSS/@@download/ENCFF295MSS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF270JJL bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJH, ENCFF807MUK 525454660 ENCODE Processing Pipeline 7bc49218028416bca0af866c643d4f83 https://www.encodeproject.org/files/ENCFF270JJL/@@download/ENCFF270JJL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF253RFD bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJG, ENCFF807MUK 507974779 ENCODE Processing Pipeline 1df66646fff1583b3cbb0c253bde38ee https://www.encodeproject.org/files/ENCFF253RFD/@@download/ENCFF253RFD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF140QVG bigWig signal p-value ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF587SXK 612179652 ENCODE Processing Pipeline c1df3c07611b2fe7a195caeb4558b340 https://www.encodeproject.org/files/ENCFF140QVG/@@download/ENCFF140QVG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF924IEK bigWig signal p-value ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF381LYV 609046567 ENCODE Processing Pipeline ddd2c7277ccad22a68ebc03840524616 https://www.encodeproject.org/files/ENCFF924IEK/@@download/ENCFF924IEK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF281OFP bigWig signal p-value ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF381LYV, ENCFF587SXK 783740509 ENCODE Processing Pipeline 9481d03b77717560d3a3b49a2cfa1ba5 https://www.encodeproject.org/files/ENCFF281OFP/@@download/ENCFF281OFP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF590DNT bigWig fold change over control ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF587SXK 364772197 ENCODE Processing Pipeline 1862e4b457bc7f1b570f5e19185933ed https://www.encodeproject.org/files/ENCFF590DNT/@@download/ENCFF590DNT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF174XJT bigWig fold change over control ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF381LYV 387928115 ENCODE Processing Pipeline 74d212531f8049b88cccdf5698fa1559 https://www.encodeproject.org/files/ENCFF174XJT/@@download/ENCFF174XJT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF715OCD bigWig fold change over control ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF381LYV, ENCFF587SXK 637677748 ENCODE Processing Pipeline 2d11333188dc8f9ea8cc05ba946cdc85 https://www.encodeproject.org/files/ENCFF715OCD/@@download/ENCFF715OCD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF888ZWT bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF587SXK 5555307 ENCODE Processing Pipeline d6c190073d9916664003f7bd7db65af9 https://www.encodeproject.org/files/ENCFF888ZWT/@@download/ENCFF888ZWT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF905LKM bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF888ZWT 13146310 ENCODE Processing Pipeline cb31da4dd5ccd9e94e21b67c2b4c3f6f https://www.encodeproject.org/files/ENCFF905LKM/@@download/ENCFF905LKM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF296GOA bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF381LYV 5657339 ENCODE Processing Pipeline 4dab8110821aaf3a2e641024cf5cd32a https://www.encodeproject.org/files/ENCFF296GOA/@@download/ENCFF296GOA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF014OBO bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF381LYV, ENCFF587SXK 6276941 ENCODE Processing Pipeline 87c33571925b8a344de48c48c9fb735d https://www.encodeproject.org/files/ENCFF014OBO/@@download/ENCFF014OBO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF455XDV bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF296GOA 13166448 ENCODE Processing Pipeline 8c2f0b1c8c8f82808a497f3dd6e63317 https://www.encodeproject.org/files/ENCFF455XDV/@@download/ENCFF455XDV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF585ZFE bed narrowPeak conservative idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014OBO, ENCFF296GOA, ENCFF419RSJ, ENCFF888ZWT 488297 ENCODE Processing Pipeline 2081211029e2c503e80c93a5ef73e44e https://www.encodeproject.org/files/ENCFF585ZFE/@@download/ENCFF585ZFE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF464AOM bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014OBO 13207714 ENCODE Processing Pipeline 0f1d3eab1f5e4fa21a8efa72a0e889d2 https://www.encodeproject.org/files/ENCFF464AOM/@@download/ENCFF464AOM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF172FKM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF875HHT 1134286 ENCODE Processing Pipeline a3ead489954a45bd5314064f82633d42 https://www.encodeproject.org/files/ENCFF172FKM/@@download/ENCFF172FKM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF420WAH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF585ZFE 1120404 ENCODE Processing Pipeline b228cefb2a6b0cf435735c4753affd65 https://www.encodeproject.org/files/ENCFF420WAH/@@download/ENCFF420WAH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF875HHT bed narrowPeak optimal idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014OBO, ENCFF296GOA, ENCFF419RSJ, ENCFF888ZWT 497158 ENCODE Processing Pipeline 180d0c6c385a66639372f05de9b71242 https://www.encodeproject.org/files/ENCFF875HHT/@@download/ENCFF875HHT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF784ZZM bigWig fold change over control ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF253RFD, ENCFF502MJK 366344520 ENCODE Processing Pipeline 960fa53fac3f8ac423f7d5e0ad5f43fb https://www.encodeproject.org/files/ENCFF784ZZM/@@download/ENCFF784ZZM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF114FTW bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF602AWU 13200081 ENCODE Processing Pipeline b249483f13ff47ecb138ff6573eeaad6 https://www.encodeproject.org/files/ENCFF114FTW/@@download/ENCFF114FTW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF260TYP bed narrowPeak optimal idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF602AWU, ENCFF647MSK, ENCFF809DQX 499425 ENCODE Processing Pipeline 49b9762263b369ef504822257579d70d https://www.encodeproject.org/files/ENCFF260TYP/@@download/ENCFF260TYP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF033VTQ bigWig signal p-value ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF253RFD, ENCFF502MJK 615566513 ENCODE Processing Pipeline 58dbc5d7bf82c75b0b0a9b7ee5257052 https://www.encodeproject.org/files/ENCFF033VTQ/@@download/ENCFF033VTQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF782QTW bigWig signal p-value ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF270JJL, ENCFF502MJK 611257276 ENCODE Processing Pipeline 83780b9a5260b040579a44c4376a09c4 https://www.encodeproject.org/files/ENCFF782QTW/@@download/ENCFF782QTW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF299JIP bigWig signal p-value ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RFD, ENCFF270JJL, ENCFF502MJK 741392661 ENCODE Processing Pipeline 45f8a7050c180ba5030032aa5c743f59 https://www.encodeproject.org/files/ENCFF299JIP/@@download/ENCFF299JIP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF570OVH bigWig fold change over control ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RFD, ENCFF270JJL, ENCFF502MJK 638617071 ENCODE Processing Pipeline 98e2fcba835bf6c45b4d89cee9575a69 https://www.encodeproject.org/files/ENCFF570OVH/@@download/ENCFF570OVH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF667PZY bed narrowPeak conservative idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF602AWU, ENCFF647MSK, ENCFF809DQX 490313 ENCODE Processing Pipeline 15c3142c90e56b33653d6ea8bb99f3f5 https://www.encodeproject.org/files/ENCFF667PZY/@@download/ENCFF667PZY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF606EYG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF667PZY 1122325 ENCODE Processing Pipeline 155a620368ec1f01656afca42f0ddb18 https://www.encodeproject.org/files/ENCFF606EYG/@@download/ENCFF606EYG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF710VVC bigWig fold change over control ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF270JJL, ENCFF502MJK 383694140 ENCODE Processing Pipeline 297c21627c4020e76c88405cb590e849 https://www.encodeproject.org/files/ENCFF710VVC/@@download/ENCFF710VVC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF647MSK bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF253RFD, ENCFF502MJK 5555261 ENCODE Processing Pipeline 38536ae0902ff6df3229c05d8e5ac1b9 https://www.encodeproject.org/files/ENCFF647MSK/@@download/ENCFF647MSK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF602AWU bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF270JJL, ENCFF502MJK 5689753 ENCODE Processing Pipeline de51d37cb980935a5ec20fb143c081cc https://www.encodeproject.org/files/ENCFF602AWU/@@download/ENCFF602AWU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF809DQX bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF253RFD, ENCFF270JJL, ENCFF502MJK 6287231 ENCODE Processing Pipeline 4e538355248d2bf3e444fbfa80ec9d81 https://www.encodeproject.org/files/ENCFF809DQX/@@download/ENCFF809DQX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF139BVE bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF647MSK 13138166 ENCODE Processing Pipeline bd1408715fce3ac4bf85d8b97d798ff6 https://www.encodeproject.org/files/ENCFF139BVE/@@download/ENCFF139BVE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF251WVO bigBed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF809DQX 13215354 ENCODE Processing Pipeline d6ea7ff7cfc694dc28f6df6a8b980575 https://www.encodeproject.org/files/ENCFF251WVO/@@download/ENCFF251WVO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF557OID bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF260TYP 1137074 ENCODE Processing Pipeline b541e36d25de1d42bd0ac35b605da950 https://www.encodeproject.org/files/ENCFF557OID/@@download/ENCFF557OID.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000YMV fastq reads ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 227514380 Peggy Farnham, USC 0d4c09997c4b4a9d6defa529cca253cc https://www.encodeproject.org/files/ENCFF000YMV/@@download/ENCFF000YMV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YMX bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNC 148120 Peggy Farnham, USC 5d0104ae078ef787089a467c655010e6 https://www.encodeproject.org/files/ENCFF000YMX/@@download/ENCFF000YMX.bigBed hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YMY bigWig signal ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 293081426 Peggy Farnham, USC 2ac456aa88ad4be89e76a1be46a0c51b https://www.encodeproject.org/files/ENCFF000YMY/@@download/ENCFF000YMY.bigWig hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF000YMZ bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YMV 307966177 Peggy Farnham, USC b4a2c68e08103da1116ff96817f55bb5 https://www.encodeproject.org/files/ENCFF000YMZ/@@download/ENCFF000YMZ.bam hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YNA bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YNM 458637798 Peggy Farnham, USC 92eac1a5d2aa6c0bf4b49c132fa1c073 https://www.encodeproject.org/files/ENCFF000YNA/@@download/ENCFF000YNA.bam hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YNM fastq reads ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 357845224 Peggy Farnham, USC 8eb5c82c5778a572723ce86425cb433e https://www.encodeproject.org/files/ENCFF000YNM/@@download/ENCFF000YNM.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released borderline replicate concordance, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF001VNC bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 39459 Peggy Farnham, USC 0e1575e9d786484b0ea7761c0ce167c6 https://www.encodeproject.org/files/ENCFF001VNC/@@download/ENCFF001VNC.bed.gz hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF002CWP bed narrowPeak optimal idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 80803 ENCODE Consortium Analysis Working Group cd1050d97484e1762c9332c2fe2467ac https://www.encodeproject.org/files/ENCFF002CWP/@@download/ENCFF002CWP.bed.gz hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF250TTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWP 180592 ENCODE Consortium 73e56757f80e14ebf08dd4c68c11b68b https://www.encodeproject.org/files/ENCFF250TTQ/@@download/ENCFF250TTQ.bigBed hg19 archived borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF806OWK bam unfiltered alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YMV, ENCFF643CGH 241042617 ENCODE Processing Pipeline 92a5c88cc991ddc4f368cd34445b0cfd https://www.encodeproject.org/files/ENCFF806OWK/@@download/ENCFF806OWK.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF642RHD bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YMV, ENCFF643CGH 134875210 ENCODE Processing Pipeline 3c6c95bbbcd50a50d3d7d09d97805e25 https://www.encodeproject.org/files/ENCFF642RHD/@@download/ENCFF642RHD.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF622HIJ bam unfiltered alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNM, ENCFF643CGH 461383136 ENCODE Processing Pipeline 01b448091b0d254a11f635b45648d6e3 https://www.encodeproject.org/files/ENCFF622HIJ/@@download/ENCFF622HIJ.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF788ICY bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNM, ENCFF643CGH 287789880 ENCODE Processing Pipeline f4a5760806922d80838b7c5e3e6695bf https://www.encodeproject.org/files/ENCFF788ICY/@@download/ENCFF788ICY.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF980WWQ bam unfiltered alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNM, ENCFF807MUK 459687858 ENCODE Processing Pipeline aaea7fa12755e6d734b42f862afa8c4d https://www.encodeproject.org/files/ENCFF980WWQ/@@download/ENCFF980WWQ.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF619NHO bam unfiltered alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YMV, ENCFF807MUK 240381831 ENCODE Processing Pipeline 9161442f7bf531dae76752381b40ff46 https://www.encodeproject.org/files/ENCFF619NHO/@@download/ENCFF619NHO.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF461UBM bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YMV, ENCFF807MUK 135030508 ENCODE Processing Pipeline 6f3c994e2d414780e18da686b90cf685 https://www.encodeproject.org/files/ENCFF461UBM/@@download/ENCFF461UBM.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF465DSP bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNM, ENCFF807MUK 288049568 ENCODE Processing Pipeline 07ecb237a52454fb3f8dd44beb2a6ecb https://www.encodeproject.org/files/ENCFF465DSP/@@download/ENCFF465DSP.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF077JWE bigWig signal p-value ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF461UBM 326936308 ENCODE Processing Pipeline 514dfb90c9acf35eb5d9c6205c34ee57 https://www.encodeproject.org/files/ENCFF077JWE/@@download/ENCFF077JWE.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF697OYK bigWig signal p-value ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF642RHD 350504651 ENCODE Processing Pipeline 66a9c93ab195f969cfb157e850097d46 https://www.encodeproject.org/files/ENCFF697OYK/@@download/ENCFF697OYK.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF132WHW bigWig signal p-value ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF465DSP 344247764 ENCODE Processing Pipeline 9a8b58de631866ac3e3856da30e95690 https://www.encodeproject.org/files/ENCFF132WHW/@@download/ENCFF132WHW.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF226FPS bigWig fold change over control ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF461UBM, ENCFF465DSP 282197447 ENCODE Processing Pipeline 3d44d8dfe039ca9dad741936cde7fa98 https://www.encodeproject.org/files/ENCFF226FPS/@@download/ENCFF226FPS.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF484BSF bed narrowPeak conservative idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF226NEO, ENCFF419RSJ, ENCFF788ZKH, ENCFF868CAQ 49216 ENCODE Processing Pipeline 1ea7dc96438af4d51a29151a5a889fc2 https://www.encodeproject.org/files/ENCFF484BSF/@@download/ENCFF484BSF.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF122AWO bigWig signal p-value ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF788ICY 391615463 ENCODE Processing Pipeline d01a79cdc0034c0665975d2051ad4648 https://www.encodeproject.org/files/ENCFF122AWO/@@download/ENCFF122AWO.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF137ORG bigWig fold change over control ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF465DSP 212035891 ENCODE Processing Pipeline 7c06d10fa0dad51a524d3ccb452754db https://www.encodeproject.org/files/ENCFF137ORG/@@download/ENCFF137ORG.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF236AJI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF659WGE 166807 ENCODE Processing Pipeline af436e4b8ec8fd926b87b356f129788a https://www.encodeproject.org/files/ENCFF236AJI/@@download/ENCFF236AJI.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF072KHT bigWig fold change over control ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF461UBM 113600533 ENCODE Processing Pipeline e1704a857fd411718644a9ea6e4f930f https://www.encodeproject.org/files/ENCFF072KHT/@@download/ENCFF072KHT.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF584MRX bigWig fold change over control ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF642RHD 113466657 ENCODE Processing Pipeline fcec82671632e219edb5b7f79a887899 https://www.encodeproject.org/files/ENCFF584MRX/@@download/ENCFF584MRX.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF728HPG bigWig fold change over control ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF788ICY 211615444 ENCODE Processing Pipeline ec6bbeb028ef26d2de245cb6c87b6e27 https://www.encodeproject.org/files/ENCFF728HPG/@@download/ENCFF728HPG.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF597BEG bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF281ONW 2928546 ENCODE Processing Pipeline d4064facb93878c61a21465fb1778801 https://www.encodeproject.org/files/ENCFF597BEG/@@download/ENCFF597BEG.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF531DEC bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF942MUF 8693574 ENCODE Processing Pipeline c51209698830d9f58bb35e075c1d1932 https://www.encodeproject.org/files/ENCFF531DEC/@@download/ENCFF531DEC.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF613UTV bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF830VFD 10678904 ENCODE Processing Pipeline e2c0c3e9f2064fef2b8ad58da6b58eba https://www.encodeproject.org/files/ENCFF613UTV/@@download/ENCFF613UTV.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF355CBE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF715NLX 137555 ENCODE Processing Pipeline 4ba45e0fa29107f1717e8e2585c366de https://www.encodeproject.org/files/ENCFF355CBE/@@download/ENCFF355CBE.bigBed hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF659WGE bed narrowPeak optimal idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF281ONW, ENCFF830VFD, ENCFF942MUF 69686 ENCODE Processing Pipeline 1173386ed1cdefa8840fec380d4ffbde https://www.encodeproject.org/files/ENCFF659WGE/@@download/ENCFF659WGE.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF045EJS bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF226NEO 10419740 ENCODE Processing Pipeline 5847c270e8e77354ffa7436949d8f086 https://www.encodeproject.org/files/ENCFF045EJS/@@download/ENCFF045EJS.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF616ZFJ bigWig signal p-value ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF461UBM, ENCFF465DSP 478303620 ENCODE Processing Pipeline d131120940afa891621d7bca6e588d9d https://www.encodeproject.org/files/ENCFF616ZFJ/@@download/ENCFF616ZFJ.bigWig hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF458IZL bigWig signal p-value ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF642RHD, ENCFF788ICY 396229985 ENCODE Processing Pipeline b2f500e4b86cc6e6d0e52151ee54f0cd https://www.encodeproject.org/files/ENCFF458IZL/@@download/ENCFF458IZL.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF634GPP bigWig fold change over control ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF642RHD, ENCFF788ICY 282560274 ENCODE Processing Pipeline 19909b3363e2cc12da0d9f59764ba33e https://www.encodeproject.org/files/ENCFF634GPP/@@download/ENCFF634GPP.bigWig GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF226NEO bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF355SGP, ENCFF642RHD, ENCFF788ICY 4240372 ENCODE Processing Pipeline faa9a2be4be03d9e8efbd10e32e49d36 https://www.encodeproject.org/files/ENCFF226NEO/@@download/ENCFF226NEO.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF715NLX bed narrowPeak conservative idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF281ONW, ENCFF830VFD, ENCFF942MUF 49036 ENCODE Processing Pipeline 376b527bc099c180f65bec7fb4ae1352 https://www.encodeproject.org/files/ENCFF715NLX/@@download/ENCFF715NLX.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF891DGY bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF868CAQ 2818010 ENCODE Processing Pipeline db77e28f04089497208eb3f36ff30458 https://www.encodeproject.org/files/ENCFF891DGY/@@download/ENCFF891DGY.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF116UFO bigBed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF788ZKH 8544457 ENCODE Processing Pipeline ff4fdb713426a4ead9aa6cb9acf6e53b https://www.encodeproject.org/files/ENCFF116UFO/@@download/ENCFF116UFO.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF266EKT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF484BSF 138560 ENCODE Processing Pipeline 46f8aece23254fa6bfd966c294d2165c https://www.encodeproject.org/files/ENCFF266EKT/@@download/ENCFF266EKT.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF811YFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF576YJD 168271 ENCODE Processing Pipeline 17e763250c5ef0d51f3b777d2a98a7b6 https://www.encodeproject.org/files/ENCFF811YFQ/@@download/ENCFF811YFQ.bigBed GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF576YJD bed narrowPeak optimal idr thresholded peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF226NEO, ENCFF419RSJ, ENCFF788ZKH, ENCFF868CAQ 71091 ENCODE Processing Pipeline 0e027d8aeed6a6ee8da9d4e88cf23ab4 https://www.encodeproject.org/files/ENCFF576YJD/@@download/ENCFF576YJD.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF281ONW bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF461UBM 1358195 ENCODE Processing Pipeline 99965bf4d8aaec0d25e61565757d4476 https://www.encodeproject.org/files/ENCFF281ONW/@@download/ENCFF281ONW.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF942MUF bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF465DSP 3449310 ENCODE Processing Pipeline c6502e4f08098ed2b9766c2dfff6b5c2 https://www.encodeproject.org/files/ENCFF942MUF/@@download/ENCFF942MUF.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF830VFD bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF461UBM, ENCFF465DSP 4532459 ENCODE Processing Pipeline 9978ba134c5d3cb344a45f38e35ec117 https://www.encodeproject.org/files/ENCFF830VFD/@@download/ENCFF830VFD.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF788ZKH bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF788ICY 3392356 ENCODE Processing Pipeline 3993f1f084d6b9982cf3e2402ca607c9 https://www.encodeproject.org/files/ENCFF788ZKH/@@download/ENCFF788ZKH.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF868CAQ bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF642RHD 1281589 ENCODE Processing Pipeline 33cefd5294d7a53c2b52b847bc25548a https://www.encodeproject.org/files/ENCFF868CAQ/@@download/ENCFF868CAQ.bed.gz GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000NFA bigBed broadPeak peaks ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TTJ 895273 Richard Myers, HAIB f10172bdf03781bde1d55dd12142cbbd https://www.encodeproject.org/files/ENCFF000NFA/@@download/ENCFF000NFA.bigBed hg19 released biological replicates with identical biosample ENCFF000NFB bigBed broadPeak peaks ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TTK 930282 Richard Myers, HAIB 7334eb896a5d1c1d4c5d419633589c39 https://www.encodeproject.org/files/ENCFF000NFB/@@download/ENCFF000NFB.bigBed hg19 released biological replicates with identical biosample ENCFF000NFC bam alignments ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NFL 1325623802 Richard Myers, HAIB 49afb6bf007996c6d9509d4a030cc7d5 https://www.encodeproject.org/files/ENCFF000NFC/@@download/ENCFF000NFC.bam hg19 released biological replicates with identical biosample ENCFF000NFD bam alignments ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NFN 1333838156 Richard Myers, HAIB 113e96cd1e03465a49334f6f1a8cf74c https://www.encodeproject.org/files/ENCFF000NFD/@@download/ENCFF000NFD.bam hg19 released biological replicates with identical biosample ENCFF000NFE bigWig raw signal ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 151057614 Richard Myers, HAIB e0d801db495ff9b973c315baf15ef9c0 https://www.encodeproject.org/files/ENCFF000NFE/@@download/ENCFF000NFE.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NFF bigWig raw signal ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 142222545 Richard Myers, HAIB bc075e898efaa01862ca4a9246666750 https://www.encodeproject.org/files/ENCFF000NFF/@@download/ENCFF000NFF.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NFL fastq reads ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1376045819 Richard Myers, HAIB 4e24af77de6288f12ff8cc520048d3c3 https://www.encodeproject.org/files/ENCFF000NFL/@@download/ENCFF000NFL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF000NFN fastq reads ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1376058373 Richard Myers, HAIB 218972399b3987be8ba93fb084b75fdf https://www.encodeproject.org/files/ENCFF000NFN/@@download/ENCFF000NFN.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGK/ released biological replicates with identical biosample ENCFF001TTJ bed broadPeak peaks ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 1 587475 Richard Myers, HAIB 29fb93eef0249ce85e7b569ae2425dd5 https://www.encodeproject.org/files/ENCFF001TTJ/@@download/ENCFF001TTJ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TTK bed broadPeak peaks ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 1 579177 Richard Myers, HAIB b34a24ddb68397ffb44f68b2179592ce https://www.encodeproject.org/files/ENCFF001TTK/@@download/ENCFF001TTK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PCO bam alignments ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PDC 1046343753 Richard Myers, HAIB 4ce0f651eb6d243385f0416a0224a903 https://www.encodeproject.org/files/ENCFF000PCO/@@download/ENCFF000PCO.bam hg19 released biological replicates with identical biosample ENCFF000PCP bam alignments ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PDE 792525186 Richard Myers, HAIB 144a56671755a77bffa6052f7284b464 https://www.encodeproject.org/files/ENCFF000PCP/@@download/ENCFF000PCP.bam hg19 released biological replicates with identical biosample ENCFF000PCQ bigBed broadPeak peaks ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEO 131899 Richard Myers, HAIB 51709cbb23bee7a3d5d97d094fb841ce https://www.encodeproject.org/files/ENCFF000PCQ/@@download/ENCFF000PCQ.bigBed hg19 released biological replicates with identical biosample ENCFF000PCR bigBed broadPeak peaks ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UEP 120446 Richard Myers, HAIB 01a6e79e10545c7be18699ac8e50d271 https://www.encodeproject.org/files/ENCFF000PCR/@@download/ENCFF000PCR.bigBed hg19 released biological replicates with identical biosample ENCFF000PCU bigWig raw signal ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 119588709 Richard Myers, HAIB f36c284bd581ec057b5a8d44dc5bc7f3 https://www.encodeproject.org/files/ENCFF000PCU/@@download/ENCFF000PCU.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PCW bigWig raw signal ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 91627874 Richard Myers, HAIB 7d375f969bd609f65decde3ed6881ff3 https://www.encodeproject.org/files/ENCFF000PCW/@@download/ENCFF000PCW.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PDC fastq reads ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1051161102 Richard Myers, HAIB e7a60bbde289ab7402491dbc24f688d5 https://www.encodeproject.org/files/ENCFF000PDC/@@download/ENCFF000PDC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PDE fastq reads ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 791828791 Richard Myers, HAIB caf85d3b222b2916c186d59c3ae8dbfa https://www.encodeproject.org/files/ENCFF000PDE/@@download/ENCFF000PDE.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEO bed broadPeak peaks ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 43589 Richard Myers, HAIB 6ebcda1ab5ddfa8c2362d56cbe91649f https://www.encodeproject.org/files/ENCFF001UEO/@@download/ENCFF001UEO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UEP bed broadPeak peaks ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 36332 Richard Myers, HAIB 5e5a2fa33f4191cd904b716b3679e7d3 https://www.encodeproject.org/files/ENCFF001UEP/@@download/ENCFF001UEP.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XCK bigWig signal ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 343183762 Sherman Weissman, Yale d46d4cabed91168c063d883dcfb9811c https://www.encodeproject.org/files/ENCFF000XCK/@@download/ENCFF000XCK.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF000XCH bam alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XCT 248749584 Sherman Weissman, Yale 06c2ff5ff121556f5b7f5f601b158e39 https://www.encodeproject.org/files/ENCFF000XCH/@@download/ENCFF000XCH.bam hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000XCI bam alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XCV 419816625 Sherman Weissman, Yale 3b5e0383c6b9dc90ae51fa7d6318a19b https://www.encodeproject.org/files/ENCFF000XCI/@@download/ENCFF000XCI.bam hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000XCJ bigBed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VID 423097 Sherman Weissman, Yale 50f00dbebbc5dcdc17f8799bddff3162 https://www.encodeproject.org/files/ENCFF000XCJ/@@download/ENCFF000XCJ.bigBed hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000XCT fastq reads ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 193782802 Sherman Weissman, Yale a49d1f036c131f8981c0cf6023107d43 https://www.encodeproject.org/files/ENCFF000XCT/@@download/ENCFF000XCT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released control low read depth, borderline replicate concordance, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000XCV fastq reads ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 323093960 Sherman Weissman, Yale ed10a3f66fffc0b3534d3cadd6caa900 https://www.encodeproject.org/files/ENCFF000XCV/@@download/ENCFF000XCV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released control low read depth, borderline replicate concordance, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF001VID bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 170090 Sherman Weissman, Yale d262bee59ec5d532b2da831bbec72c1a https://www.encodeproject.org/files/ENCFF001VID/@@download/ENCFF001VID.bed.gz hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF002CSE bed narrowPeak optimal idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 253559 ENCODE Consortium Analysis Working Group cd0ff8cf66b0bac2ec9a653fc3344457 https://www.encodeproject.org/files/ENCFF002CSE/@@download/ENCFF002CSE.bed.gz hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF361CQF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSE 632208 ENCODE Consortium b1202f7abc58ddf8e5ea4a3f0184a757 https://www.encodeproject.org/files/ENCFF361CQF/@@download/ENCFF361CQF.bigBed hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF928GRQ bigWig signal p-value ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF406ZWO, ENCFF814FCQ 278394202 ENCODE Processing Pipeline ef9454da4aa57caeb2922407224979cc https://www.encodeproject.org/files/ENCFF928GRQ/@@download/ENCFF928GRQ.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF522IZP bigWig fold change over control ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF406ZWO, ENCFF814FCQ 88416341 ENCODE Processing Pipeline bd40f795627fac652667703087fc0162 https://www.encodeproject.org/files/ENCFF522IZP/@@download/ENCFF522IZP.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF237QYQ bigWig signal p-value ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF628WKV, ENCFF814FCQ 283421045 ENCODE Processing Pipeline 108b91c114ef5633e87e556d89cc75f1 https://www.encodeproject.org/files/ENCFF237QYQ/@@download/ENCFF237QYQ.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF672PHW bigWig signal p-value ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF406ZWO, ENCFF628WKV, ENCFF814FCQ 281657195 ENCODE Processing Pipeline eb3aa33f143f65c8f5fed35f4eee8a9d https://www.encodeproject.org/files/ENCFF672PHW/@@download/ENCFF672PHW.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF059CET bigWig fold change over control ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF628WKV, ENCFF814FCQ 131198065 ENCODE Processing Pipeline 5a95a2ff579b89220041d71e56b74feb https://www.encodeproject.org/files/ENCFF059CET/@@download/ENCFF059CET.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF609BPN bigWig fold change over control ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF406ZWO, ENCFF628WKV, ENCFF814FCQ 196183670 ENCODE Processing Pipeline 20134dd4e0c8fff2bf38d44d0e2bb387 https://www.encodeproject.org/files/ENCFF609BPN/@@download/ENCFF609BPN.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF045UZK bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF628WKV, ENCFF814FCQ 3064246 ENCODE Processing Pipeline 29af1a0d0101ff71fd4acf3f4c5d783f https://www.encodeproject.org/files/ENCFF045UZK/@@download/ENCFF045UZK.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF301KMB bigBed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF224GZD 3032590 ENCODE Processing Pipeline 2eb9cd3822403af420bf640c858855b4 https://www.encodeproject.org/files/ENCFF301KMB/@@download/ENCFF301KMB.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF705DTV bigBed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF471HJA 10220865 ENCODE Processing Pipeline b4ad904fb9c74306e006dd91f08100b3 https://www.encodeproject.org/files/ENCFF705DTV/@@download/ENCFF705DTV.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF932YPQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF891KEP 329833 ENCODE Processing Pipeline bc792dbb150ba8ed02a8b700cd45508c https://www.encodeproject.org/files/ENCFF932YPQ/@@download/ENCFF932YPQ.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF891KEP bed narrowPeak conservative idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF045UZK, ENCFF224GZD, ENCFF471HJA 148935 ENCODE Processing Pipeline 5ac9711fe9eff0101edfa8929ff3be20 https://www.encodeproject.org/files/ENCFF891KEP/@@download/ENCFF891KEP.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF981FXS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 417945 ENCODE Processing Pipeline f810c83c9201bae8f3630794a20bdc3b https://www.encodeproject.org/files/ENCFF981FXS/@@download/ENCFF981FXS.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF677HTL bigBed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF045UZK 6597677 ENCODE Processing Pipeline 88a6e99a027b52f4d19b8c2ed143413f https://www.encodeproject.org/files/ENCFF677HTL/@@download/ENCFF677HTL.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF688IPV bed narrowPeak optimal idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 209732 ENCODE Processing Pipeline d176f07488f92bc027468a9db6d5bd4d https://www.encodeproject.org/files/ENCFF688IPV/@@download/ENCFF688IPV.bed.gz hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length extremely low read depth ENCFF914AJX bam unfiltered alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XCT, ENCFF807MUK 249807877 ENCODE Processing Pipeline bfc8748cafcc41636b5dcb2c583855c3 https://www.encodeproject.org/files/ENCFF914AJX/@@download/ENCFF914AJX.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF406ZWO bam alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XCT, ENCFF807MUK 126559077 ENCODE Processing Pipeline 629375970b5ce0292e6d9ecece597826 https://www.encodeproject.org/files/ENCFF406ZWO/@@download/ENCFF406ZWO.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF848XOE bam unfiltered alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XCV, ENCFF807MUK 420458997 ENCODE Processing Pipeline 0dd4a5e5c037d33b1af86b2ad0ba7b29 https://www.encodeproject.org/files/ENCFF848XOE/@@download/ENCFF848XOE.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF628WKV bam alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XCV, ENCFF807MUK 248208221 ENCODE Processing Pipeline c636e680a0ce930a0c2474d9e9707af2 https://www.encodeproject.org/files/ENCFF628WKV/@@download/ENCFF628WKV.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF224GZD bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF406ZWO, ENCFF814FCQ 1535754 ENCODE Processing Pipeline a7c295748685ddbdf57c4aca4091794c https://www.encodeproject.org/files/ENCFF224GZD/@@download/ENCFF224GZD.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF471HJA bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF406ZWO, ENCFF628WKV, ENCFF814FCQ 4630396 ENCODE Processing Pipeline 313dcaebf2548caf4010efe45c242275 https://www.encodeproject.org/files/ENCFF471HJA/@@download/ENCFF471HJA.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF950LQM bed narrowPeak optimal idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF045UZK, ENCFF224GZD, ENCFF471HJA 209438 ENCODE Processing Pipeline 9c585bf7485ac45eac9214d50fa11e73 https://www.encodeproject.org/files/ENCFF950LQM/@@download/ENCFF950LQM.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF623SJG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF950LQM 417657 ENCODE Processing Pipeline b3333a5c7b0c0af1dc123902fb754aa0 https://www.encodeproject.org/files/ENCFF623SJG/@@download/ENCFF623SJG.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000QMV bam alignments ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QNK 1709520694 Richard Myers, HAIB c1b97327c16f8acfcbc160c4ddf1956e https://www.encodeproject.org/files/ENCFF000QMV/@@download/ENCFF000QMV.bam hg19 released biological replicates with identical biosample ENCFF000QMW bigBed broadPeak peaks ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMV 327718 Richard Myers, HAIB 5cfaee7dc2279570c82be153a886d275 https://www.encodeproject.org/files/ENCFF000QMW/@@download/ENCFF000QMW.bigBed hg19 released biological replicates with identical biosample ENCFF000QMX bigBed broadPeak peaks ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMW 224351 Richard Myers, HAIB 094db055d9ca0e99b3fde33a20c6fbfa https://www.encodeproject.org/files/ENCFF000QMX/@@download/ENCFF000QMX.bigBed hg19 released biological replicates with identical biosample ENCFF000QMY bam alignments ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QNJ 1338050682 Richard Myers, HAIB d0005d59276388fdffb76e8a6c7f33ac https://www.encodeproject.org/files/ENCFF000QMY/@@download/ENCFF000QMY.bam hg19 released biological replicates with identical biosample ENCFF000QNA bigWig raw signal ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 205739176 Richard Myers, HAIB 8dac50d773591d72a39d8244d2ec6fce https://www.encodeproject.org/files/ENCFF000QNA/@@download/ENCFF000QNA.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QNB bigWig raw signal ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 100062958 Richard Myers, HAIB e2f06bcdbbb69f7a7b2c6f16a3d268b4 https://www.encodeproject.org/files/ENCFF000QNB/@@download/ENCFF000QNB.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QNJ fastq reads ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1490294439 Richard Myers, HAIB e462f726ef8cfd8ccc4bcbc5f8e098a0 https://www.encodeproject.org/files/ENCFF000QNJ/@@download/ENCFF000QNJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQK/ released biological replicates with identical biosample ENCFF000QNK fastq reads ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1787650405 Richard Myers, HAIB 58413056397806609d16f18660a3c192 https://www.encodeproject.org/files/ENCFF000QNK/@@download/ENCFF000QNK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMV bed broadPeak peaks ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 158977 Richard Myers, HAIB f7a66df06a8932e034f18c209361de26 https://www.encodeproject.org/files/ENCFF001UMV/@@download/ENCFF001UMV.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UMW bed broadPeak peaks ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 102386 Richard Myers, HAIB 133fc6ff75597452742a19327b318fde https://www.encodeproject.org/files/ENCFF001UMW/@@download/ENCFF001UMW.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000MYQ bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MZG 1748303044 Richard Myers, HAIB bc1f2cfb2da0ba123b789888ea0efbe7 https://www.encodeproject.org/files/ENCFF000MYQ/@@download/ENCFF000MYQ.bam hg19 archived low read length biological replicates with identical biosample ENCFF000MYS bigBed broadPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TRZ 192157 Richard Myers, HAIB f98dc62efcabd4684d41affe1c01178e https://www.encodeproject.org/files/ENCFF000MYS/@@download/ENCFF000MYS.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000MYT bigBed broadPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TSA 423232 Richard Myers, HAIB 0d0b8145bd071f96a949b73906c14498 https://www.encodeproject.org/files/ENCFF000MYT/@@download/ENCFF000MYT.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000MYU bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000MZF 1573241484 Richard Myers, HAIB 69d7f276043cd52797ceb79ab2e5732a https://www.encodeproject.org/files/ENCFF000MYU/@@download/ENCFF000MYU.bam hg19 archived low read length biological replicates with identical biosample ENCFF000MYV bigWig raw signal ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 9113837 Richard Myers, HAIB fb746992514ab036786199c3919a2d49 https://www.encodeproject.org/files/ENCFF000MYV/@@download/ENCFF000MYV.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000MYW bigWig raw signal ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 17017726 Richard Myers, HAIB 329b1b4577f5981c4f9a3b05ff65b4c0 https://www.encodeproject.org/files/ENCFF000MYW/@@download/ENCFF000MYW.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000MZF fastq reads ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1561831434 Richard Myers, HAIB a3c7b4336ffd9374a1501e9d7f2f0711 https://www.encodeproject.org/files/ENCFF000MZF/@@download/ENCFF000MZF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF000MZG fastq reads ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1706037609 Richard Myers, HAIB b5f9875ebb69fafa5c78030439d14408 https://www.encodeproject.org/files/ENCFF000MZG/@@download/ENCFF000MZG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF001TRZ bed broadPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 93420 Richard Myers, HAIB 46d636179bd6f4281794c63dfcb4349a https://www.encodeproject.org/files/ENCFF001TRZ/@@download/ENCFF001TRZ.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF001TSA bed broadPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 232292 Richard Myers, HAIB afdc2ade2b856c91a334ff5cc8cd4fa3 https://www.encodeproject.org/files/ENCFF001TSA/@@download/ENCFF001TSA.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF002CFL bed narrowPeak optimal idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 213909 ENCODE Consortium Analysis Working Group 6a7358ad55f86356616458ebbb57edf0 https://www.encodeproject.org/files/ENCFF002CFL/@@download/ENCFF002CFL.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF777XTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFL 580203 ENCODE Consortium 3a6193650b3edfe573240965d596d558 https://www.encodeproject.org/files/ENCFF777XTA/@@download/ENCFF777XTA.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF264UCL bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZF, ENCFF643CGH 1074831096 ENCODE Processing Pipeline 6ed004206c5ed62214318acbde6f27aa https://www.encodeproject.org/files/ENCFF264UCL/@@download/ENCFF264UCL.bam GRCh38 released low read length biological replicates with identical biosample ENCFF878CGJ bam unfiltered alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZF, ENCFF643CGH 1709781690 ENCODE Processing Pipeline 2f7b576ff2dcfef652dbb29ff358b04a https://www.encodeproject.org/files/ENCFF878CGJ/@@download/ENCFF878CGJ.bam GRCh38 released low read length biological replicates with identical biosample ENCFF164SSQ bam unfiltered alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZG, ENCFF643CGH 1914449244 ENCODE Processing Pipeline ee3aef794c5ee699f35c6ef0b16912f4 https://www.encodeproject.org/files/ENCFF164SSQ/@@download/ENCFF164SSQ.bam GRCh38 released low read length biological replicates with identical biosample ENCFF204HXG bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZG, ENCFF643CGH 1214416425 ENCODE Processing Pipeline 00719feb2c4be53716f8bf9b44d77965 https://www.encodeproject.org/files/ENCFF204HXG/@@download/ENCFF204HXG.bam GRCh38 released low read length biological replicates with identical biosample ENCFF498ADD bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZF, ENCFF807MUK 1075035759 ENCODE Processing Pipeline 2e6f8c68742feddd035fd8032e2ec375 https://www.encodeproject.org/files/ENCFF498ADD/@@download/ENCFF498ADD.bam hg19 released low read length biological replicates with identical biosample ENCFF557QAM bam unfiltered alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZF, ENCFF807MUK 1705457678 ENCODE Processing Pipeline 5ec7c875689b8fb76bcb40071ed9a689 https://www.encodeproject.org/files/ENCFF557QAM/@@download/ENCFF557QAM.bam hg19 released low read length biological replicates with identical biosample ENCFF036XOQ bam unfiltered alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZG, ENCFF807MUK 1905196873 ENCODE Processing Pipeline 23fae9408a3c88f092b4c3e729469a6d https://www.encodeproject.org/files/ENCFF036XOQ/@@download/ENCFF036XOQ.bam hg19 released low read length biological replicates with identical biosample ENCFF860JJU bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZG, ENCFF807MUK 1214621465 ENCODE Processing Pipeline bd3e5d6e0fb855d677270e3bf8a5641d https://www.encodeproject.org/files/ENCFF860JJU/@@download/ENCFF860JJU.bam hg19 released low read length biological replicates with identical biosample ENCFF620SCO bigWig signal p-value ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF204HXG, ENCFF656HEF 622481251 ENCODE Processing Pipeline 0c10164787731ef7486492b17ab0a8eb https://www.encodeproject.org/files/ENCFF620SCO/@@download/ENCFF620SCO.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF114VJC bigWig signal p-value ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF264UCL, ENCFF656HEF 696912484 ENCODE Processing Pipeline 1a57e024b7a1ec5d3c88402607a80f16 https://www.encodeproject.org/files/ENCFF114VJC/@@download/ENCFF114VJC.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF603RBP bigWig signal p-value ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF204HXG, ENCFF264UCL, ENCFF656HEF 838381120 ENCODE Processing Pipeline 332f7fcc6531abbfef8e9bfadd5d2aba https://www.encodeproject.org/files/ENCFF603RBP/@@download/ENCFF603RBP.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF956HAA bigWig fold change over control ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF204HXG, ENCFF656HEF 606775309 ENCODE Processing Pipeline ac441c6897349b3d14dda19c70de6ff4 https://www.encodeproject.org/files/ENCFF956HAA/@@download/ENCFF956HAA.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF032LDM bigWig fold change over control ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF264UCL, ENCFF656HEF 564572635 ENCODE Processing Pipeline e88eba04c23d279043d1e33c8e83b64b https://www.encodeproject.org/files/ENCFF032LDM/@@download/ENCFF032LDM.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF527SIP bigWig fold change over control ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF204HXG, ENCFF264UCL, ENCFF656HEF 965437597 ENCODE Processing Pipeline 0c45cad4ca2ad69c865012d432964fed https://www.encodeproject.org/files/ENCFF527SIP/@@download/ENCFF527SIP.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF213GND bigBed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF107DUP 13533245 ENCODE Processing Pipeline af67ce7d7a8032a17e3a17d82a658aa0 https://www.encodeproject.org/files/ENCFF213GND/@@download/ENCFF213GND.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF300PRA bigBed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF815HRV 7422356 ENCODE Processing Pipeline edc2bff6e1e865d83da1e3c31b5cf4c8 https://www.encodeproject.org/files/ENCFF300PRA/@@download/ENCFF300PRA.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF815HRV bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF204HXG, ENCFF264UCL, ENCFF656HEF 3703843 ENCODE Processing Pipeline dfbaa96515a999dce1bf6e26128266a2 https://www.encodeproject.org/files/ENCFF815HRV/@@download/ENCFF815HRV.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF350DZM bigBed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF377XVZ 13133024 ENCODE Processing Pipeline be3d0e646e953339d083a5f6252d463f https://www.encodeproject.org/files/ENCFF350DZM/@@download/ENCFF350DZM.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF107DUP bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF204HXG, ENCFF656HEF 5609101 ENCODE Processing Pipeline 657d1e843ac6a7204f6283778a644d5b https://www.encodeproject.org/files/ENCFF107DUP/@@download/ENCFF107DUP.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF912QRU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF935ZUW 419100 ENCODE Processing Pipeline 7c945e18ac86b79ddb735cb571a2fea6 https://www.encodeproject.org/files/ENCFF912QRU/@@download/ENCFF912QRU.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF377XVZ bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF264UCL, ENCFF656HEF 6238779 ENCODE Processing Pipeline 682288328f425f63c7211fdcc7f3dd74 https://www.encodeproject.org/files/ENCFF377XVZ/@@download/ENCFF377XVZ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF457YJH bed narrowPeak conservative idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF107DUP, ENCFF377XVZ, ENCFF419RSJ, ENCFF815HRV 168777 ENCODE Processing Pipeline 19195a4e6ddb0474743b5f00cae25a47 https://www.encodeproject.org/files/ENCFF457YJH/@@download/ENCFF457YJH.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF863CLM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF457YJH 368218 ENCODE Processing Pipeline bd9dc2778e40d4d71a24f98be231d398 https://www.encodeproject.org/files/ENCFF863CLM/@@download/ENCFF863CLM.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF935ZUW bed narrowPeak optimal idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF107DUP, ENCFF377XVZ, ENCFF419RSJ, ENCFF815HRV 204725 ENCODE Processing Pipeline 5c78e6a58cb6fc5d92b741e2064dc371 https://www.encodeproject.org/files/ENCFF935ZUW/@@download/ENCFF935ZUW.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF584CUC bigWig signal p-value ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF860JJU, ENCFF864UEQ 662263671 ENCODE Processing Pipeline fe090611f3281041256b4de0e1ccdd8c https://www.encodeproject.org/files/ENCFF584CUC/@@download/ENCFF584CUC.bigWig hg19 released low read length biological replicates with identical biosample ENCFF565DUV bigWig signal p-value ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF498ADD, ENCFF864UEQ 645984333 ENCODE Processing Pipeline c1cbd485cc339049342e7bedcb6ec853 https://www.encodeproject.org/files/ENCFF565DUV/@@download/ENCFF565DUV.bigWig hg19 released low read length biological replicates with identical biosample ENCFF311EDK bigWig signal p-value ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF498ADD, ENCFF860JJU, ENCFF864UEQ 845234978 ENCODE Processing Pipeline 2302b95dcc8d93da77afea74f99e2a7f https://www.encodeproject.org/files/ENCFF311EDK/@@download/ENCFF311EDK.bigWig hg19 released low read length biological replicates with identical biosample ENCFF676ZML bigWig fold change over control ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF498ADD, ENCFF864UEQ 561775083 ENCODE Processing Pipeline dd176c0f54ee13ec6e7ea4f316230bed https://www.encodeproject.org/files/ENCFF676ZML/@@download/ENCFF676ZML.bigWig hg19 released low read length biological replicates with identical biosample ENCFF334JCG bigWig fold change over control ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF860JJU, ENCFF864UEQ 600057218 ENCODE Processing Pipeline 83f1abf8db9485e46cd2d17b5501be53 https://www.encodeproject.org/files/ENCFF334JCG/@@download/ENCFF334JCG.bigWig hg19 released low read length biological replicates with identical biosample ENCFF641DGA bigBed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF386WPS 13145587 ENCODE Processing Pipeline a54e128c8b429a9981165501e17525de https://www.encodeproject.org/files/ENCFF641DGA/@@download/ENCFF641DGA.bigBed hg19 released low read length biological replicates with identical biosample ENCFF224SFK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF339UEX 366751 ENCODE Processing Pipeline f94978382dec2b443fe2d7c388a60c66 https://www.encodeproject.org/files/ENCFF224SFK/@@download/ENCFF224SFK.bigBed hg19 released low read length biological replicates with identical biosample ENCFF049QRO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF533NIV 412594 ENCODE Processing Pipeline 66c2583c963a6172ec7009ee4e4e4044 https://www.encodeproject.org/files/ENCFF049QRO/@@download/ENCFF049QRO.bigBed hg19 released low read length biological replicates with identical biosample ENCFF364BAO bigWig fold change over control ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF498ADD, ENCFF860JJU, ENCFF864UEQ 980105884 ENCODE Processing Pipeline 10f1299b1d7db7e841a563d33af73001 https://www.encodeproject.org/files/ENCFF364BAO/@@download/ENCFF364BAO.bigWig hg19 released low read length biological replicates with identical biosample ENCFF731JIX bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF860JJU, ENCFF864UEQ 5607155 ENCODE Processing Pipeline a6371774fda1b790b6b7e613e84b6a18 https://www.encodeproject.org/files/ENCFF731JIX/@@download/ENCFF731JIX.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF386WPS bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF498ADD, ENCFF864UEQ 6274603 ENCODE Processing Pipeline 125cbc61b3d0171b55b890cc01723ad7 https://www.encodeproject.org/files/ENCFF386WPS/@@download/ENCFF386WPS.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF200DAE bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF498ADD, ENCFF860JJU, ENCFF864UEQ 3695019 ENCODE Processing Pipeline 596f94ab9f3ec4fd2c7760b19d279369 https://www.encodeproject.org/files/ENCFF200DAE/@@download/ENCFF200DAE.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF022JER bigBed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF731JIX 13527763 ENCODE Processing Pipeline 3083b188bd53e3660c0753b790750f1b https://www.encodeproject.org/files/ENCFF022JER/@@download/ENCFF022JER.bigBed hg19 released low read length biological replicates with identical biosample ENCFF533NIV bed narrowPeak optimal idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF200DAE, ENCFF386WPS, ENCFF731JIX 201656 ENCODE Processing Pipeline 8235e20c036071844e126474e0b8d102 https://www.encodeproject.org/files/ENCFF533NIV/@@download/ENCFF533NIV.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF339UEX bed narrowPeak conservative idr thresholded peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF200DAE, ENCFF386WPS, ENCFF731JIX 168318 ENCODE Processing Pipeline 96943b14a16a7ba82a51105d3d9a4f91 https://www.encodeproject.org/files/ENCFF339UEX/@@download/ENCFF339UEX.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF207IDY bigBed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF200DAE 7406662 ENCODE Processing Pipeline 253585f42b4c32e3d340197430174157 https://www.encodeproject.org/files/ENCFF207IDY/@@download/ENCFF207IDY.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000NUM bigBed broadPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 ENCFF001TWS 94661 Richard Myers, HAIB ece0537aaeb6fad2c856630b610c6c8a https://www.encodeproject.org/files/ENCFF000NUM/@@download/ENCFF000NUM.bigBed hg19 archived low read length, low read depth ENCFF000NUN bigWig raw signal ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 24402788 Richard Myers, HAIB a4c82c8f1666654f8c17082ba299fa77 https://www.encodeproject.org/files/ENCFF000NUN/@@download/ENCFF000NUN.bigWig hg19 archived low read length, low read depth missing derived_from ENCFF000NUO bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF000NVB 1502945345 Richard Myers, HAIB 46f751378a350a44034c0a79c3c5577a https://www.encodeproject.org/files/ENCFF000NUO/@@download/ENCFF000NUO.bam hg19 archived low read length, low read depth ENCFF000NVB fastq reads ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 36 single-ended 1293018872 Richard Myers, HAIB 2578cb5e97d34448e0dd4e471130dc12 https://www.encodeproject.org/files/ENCFF000NVB/@@download/ENCFF000NVB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released low read length, low read depth, inconsistent control read length ENCFF001TWS bed broadPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 1 33790 Richard Myers, HAIB 7188e3bd287afd83582b17a77aa402c4 https://www.encodeproject.org/files/ENCFF001TWS/@@download/ENCFF001TWS.bed.gz hg19 archived low read length, low read depth missing derived_from ENCFF002CGW bed narrowPeak optimal idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 424286 ENCODE Consortium Analysis Working Group 8cf58cb06c7dc27907e9926a5f293f4b https://www.encodeproject.org/files/ENCFF002CGW/@@download/ENCFF002CGW.bed.gz hg19 archived low read length, low read depth missing derived_from ENCFF863RPA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGW 1182745 ENCODE Consortium f31ee7ac9e16998704d82dd63fa5b8d2 https://www.encodeproject.org/files/ENCFF863RPA/@@download/ENCFF863RPA.bigBed hg19 archived low read length, low read depth ENCFF347QCT bam unfiltered alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF643CGH 1459430058 ENCODE Processing Pipeline 6de32910465f6bcf0e67601c8bd05f8f https://www.encodeproject.org/files/ENCFF347QCT/@@download/ENCFF347QCT.bam GRCh38 released low read length, low read depth ENCFF100VNU bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF643CGH 492700527 ENCODE Processing Pipeline 136bdc266af65fa315799ccb4a6d63f0 https://www.encodeproject.org/files/ENCFF100VNU/@@download/ENCFF100VNU.bam GRCh38 released low read length, low read depth ENCFF857OMT bam unfiltered alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF807MUK 1455490626 ENCODE Processing Pipeline 5c6682eb4e379a7fc8db727bdfb87f19 https://www.encodeproject.org/files/ENCFF857OMT/@@download/ENCFF857OMT.bam hg19 released low read length, low read depth ENCFF436AVX bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF807MUK 490876518 ENCODE Processing Pipeline da2c6de8972ecab02e4b3e3d8ee4d559 https://www.encodeproject.org/files/ENCFF436AVX/@@download/ENCFF436AVX.bam hg19 released low read length, low read depth ENCFF287JUG bed narrowPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF100VNU, ENCFF289ONG 4634393 ENCODE Processing Pipeline 7d7c1af62eb44f5910ae5aee1824c849 https://www.encodeproject.org/files/ENCFF287JUG/@@download/ENCFF287JUG.bed.gz GRCh38 released low read length, low read depth ENCFF357OHD bigWig fold change over control ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF100VNU, ENCFF289ONG 290950842 ENCODE Processing Pipeline 0be2eef88b9a57613f5d13a70da4334e https://www.encodeproject.org/files/ENCFF357OHD/@@download/ENCFF357OHD.bigWig GRCh38 released low read length, low read depth ENCFF621BPK bigBed narrowPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF287JUG 10799751 ENCODE Processing Pipeline 86741f766571713a5cc4327ae47dde51 https://www.encodeproject.org/files/ENCFF621BPK/@@download/ENCFF621BPK.bigBed GRCh38 released low read length, low read depth ENCFF033EGO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF341EJT 139942 ENCODE Processing Pipeline 0a3a781b995bc781c4b02c6b7d98cb70 https://www.encodeproject.org/files/ENCFF033EGO/@@download/ENCFF033EGO.bigBed GRCh38 released low read length, low read depth ENCFF341EJT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF287JUG, ENCFF419RSJ 50082 ENCODE Processing Pipeline 82b3444a27d4545414406b83892b3be5 https://www.encodeproject.org/files/ENCFF341EJT/@@download/ENCFF341EJT.bed.gz GRCh38 released low read length, low read depth ENCFF451FUH bigWig signal p-value ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF100VNU, ENCFF289ONG 478160644 ENCODE Processing Pipeline 7327bc13b58ada25366b352a50c9ef32 https://www.encodeproject.org/files/ENCFF451FUH/@@download/ENCFF451FUH.bigWig GRCh38 released low read length, low read depth ENCFF624CPW bigWig fold change over control ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF416BIN, ENCFF436AVX 295982973 ENCODE Processing Pipeline 52ba13bee0f9e790f2d2152a43b63491 https://www.encodeproject.org/files/ENCFF624CPW/@@download/ENCFF624CPW.bigWig hg19 released low read length, low read depth ENCFF615RBF bigBed narrowPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF958SWO 10770230 ENCODE Processing Pipeline d2da3c1bc15bc7141aa0cda486574de4 https://www.encodeproject.org/files/ENCFF615RBF/@@download/ENCFF615RBF.bigBed hg19 released low read length, low read depth ENCFF618EFD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF001TDO, ENCFF958SWO 48934 ENCODE Processing Pipeline 5086b8288dcbb4e9f5152cf6c7338a68 https://www.encodeproject.org/files/ENCFF618EFD/@@download/ENCFF618EFD.bed.gz hg19 released low read length, low read depth ENCFF361MGY bigWig signal p-value ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF416BIN, ENCFF436AVX 408390119 ENCODE Processing Pipeline 291a04d3c5d8c5944af20196047b8ebd https://www.encodeproject.org/files/ENCFF361MGY/@@download/ENCFF361MGY.bigWig hg19 released low read length, low read depth ENCFF656NCQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF618EFD 137957 ENCODE Processing Pipeline 1c568a6e7aed1c6b08730df62596b7c9 https://www.encodeproject.org/files/ENCFF656NCQ/@@download/ENCFF656NCQ.bigBed hg19 released low read length, low read depth ENCFF958SWO bed narrowPeak peaks ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 ENCFF416BIN, ENCFF436AVX 4694893 ENCODE Processing Pipeline aaf0e7309f3fc86723d38df8d2827e8f https://www.encodeproject.org/files/ENCFF958SWO/@@download/ENCFF958SWO.bed.gz hg19 released low read length, low read depth ENCFF000ZIP bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZJA 498809419 Kevin Struhl, HMS d151e7e5dd2c6ab85c463c557fa8b02b https://www.encodeproject.org/files/ENCFF000ZIP/@@download/ENCFF000ZIP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZIQ bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPY 6017817 Kevin Struhl, HMS aa837e77c2c3a492d08b1b0b65309a13 https://www.encodeproject.org/files/ENCFF000ZIQ/@@download/ENCFF000ZIQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZIR bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZIY 468228038 Kevin Struhl, HMS cf02bb8dd5d79acb1fed7ab1a91fa563 https://www.encodeproject.org/files/ENCFF000ZIR/@@download/ENCFF000ZIR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZIU bigWig signal ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 285147472 Kevin Struhl, HMS 4f3daf1b172cc521310c8cd761ce338d https://www.encodeproject.org/files/ENCFF000ZIU/@@download/ENCFF000ZIU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, missing derived_from ENCFF000ZIY fastq reads ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1089159505 Kevin Struhl, HMS 47f947101960d51902482d9952de7b69 https://www.encodeproject.org/files/ENCFF000ZIY/@@download/ENCFF000ZIY.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000ZJA fastq reads ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1279635661 Kevin Struhl, HMS 7645e36ce2d843628f6b1865dff308cd https://www.encodeproject.org/files/ENCFF000ZJA/@@download/ENCFF000ZJA.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZIZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF001VPY bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2610042 Kevin Struhl, HMS 184946940f19ed5cff89bf1aa2376943 https://www.encodeproject.org/files/ENCFF001VPY/@@download/ENCFF001VPY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization missing derived_from, biological replicates with identical biosample ENCFF002CZC bed narrowPeak optimal idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 467001 ENCODE Consortium Analysis Working Group c436ecd661c55364f3901b59af6fe912 https://www.encodeproject.org/files/ENCFF002CZC/@@download/ENCFF002CZC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization missing derived_from, biological replicates with identical biosample ENCFF423ATA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZC 1332058 ENCODE Consortium 5442c605ad715501bda579c7bc74442f https://www.encodeproject.org/files/ENCFF423ATA/@@download/ENCFF423ATA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF276UEG bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZIY, ENCFF643CGH 558617573 ENCODE Processing Pipeline 0875ea92aa48e697805607702a5634fe https://www.encodeproject.org/files/ENCFF276UEG/@@download/ENCFF276UEG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF777DCM bam unfiltered alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZIY, ENCFF643CGH 1166051936 ENCODE Processing Pipeline 271b74f607c60e38f79a31dccdad264f https://www.encodeproject.org/files/ENCFF777DCM/@@download/ENCFF777DCM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF097ZOZ bam unfiltered alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJA, ENCFF643CGH 1398197973 ENCODE Processing Pipeline d5dd48a10275aa85dc5710ce7b66acc1 https://www.encodeproject.org/files/ENCFF097ZOZ/@@download/ENCFF097ZOZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF606LJM bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJA, ENCFF643CGH 718525469 ENCODE Processing Pipeline b62a0df7c7b15f07e81b07b960a9ca93 https://www.encodeproject.org/files/ENCFF606LJM/@@download/ENCFF606LJM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF044SVI bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZIY, ENCFF807MUK 558819332 ENCODE Processing Pipeline 60ee43f093ee0f7ede1f466710565d2d https://www.encodeproject.org/files/ENCFF044SVI/@@download/ENCFF044SVI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF603PVF bam unfiltered alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZIY, ENCFF807MUK 1162718717 ENCODE Processing Pipeline 56fcca994970499cabea6064b53bf6cf https://www.encodeproject.org/files/ENCFF603PVF/@@download/ENCFF603PVF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF260GKK bam unfiltered alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJA, ENCFF807MUK 1394147521 ENCODE Processing Pipeline 406c48459b961db0d207544953fbb1f0 https://www.encodeproject.org/files/ENCFF260GKK/@@download/ENCFF260GKK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF008ZST bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJA, ENCFF807MUK 718679710 ENCODE Processing Pipeline 5d7494980b22439fc016630dc99dd71b https://www.encodeproject.org/files/ENCFF008ZST/@@download/ENCFF008ZST.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF844YIT bigWig signal p-value ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF606LJM 666425552 ENCODE Processing Pipeline 6c132139b667863ffd96d735bd977784 https://www.encodeproject.org/files/ENCFF844YIT/@@download/ENCFF844YIT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF722FYE bigWig signal p-value ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF276UEG, ENCFF606LJM 818066215 ENCODE Processing Pipeline 5b90d5017a56e592be5857963eb74bc5 https://www.encodeproject.org/files/ENCFF722FYE/@@download/ENCFF722FYE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF939VLZ bigWig fold change over control ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF606LJM 481927034 ENCODE Processing Pipeline 4b5851d7e7bbba909946f7d10fad1eba https://www.encodeproject.org/files/ENCFF939VLZ/@@download/ENCFF939VLZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF830DYQ bigWig signal p-value ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF276UEG 682122212 ENCODE Processing Pipeline 99af96f54cc8a9cf746d442b0a9ffc44 https://www.encodeproject.org/files/ENCFF830DYQ/@@download/ENCFF830DYQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF940IHF bigWig fold change over control ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF276UEG 385205371 ENCODE Processing Pipeline cabd7a301fa1b2d668d9d81144fd3704 https://www.encodeproject.org/files/ENCFF940IHF/@@download/ENCFF940IHF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF869KFA bigWig fold change over control ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF276UEG, ENCFF606LJM 721354302 ENCODE Processing Pipeline b71ceb58eb269ddf4507821e4dbbfa59 https://www.encodeproject.org/files/ENCFF869KFA/@@download/ENCFF869KFA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF616KTI bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF120GKA, ENCFF606LJM 6143817 ENCODE Processing Pipeline 53ea4984da19f0ab021066bf8a93c516 https://www.encodeproject.org/files/ENCFF616KTI/@@download/ENCFF616KTI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF973KWO bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120GKA, ENCFF276UEG 5979395 ENCODE Processing Pipeline 72aba491b422b3a6240864bbab9f975b https://www.encodeproject.org/files/ENCFF973KWO/@@download/ENCFF973KWO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF585YZL bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF973KWO 12935794 ENCODE Processing Pipeline 0606fe19b75ba72d5f535586770a58d7 https://www.encodeproject.org/files/ENCFF585YZL/@@download/ENCFF585YZL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF318OYK bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF616KTI 13069453 ENCODE Processing Pipeline 3db43c579312cead6024369050b963b3 https://www.encodeproject.org/files/ENCFF318OYK/@@download/ENCFF318OYK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF939CMZ bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF096YWD 12992149 ENCODE Processing Pipeline d25ad387311fb0eca79c579feffe22f6 https://www.encodeproject.org/files/ENCFF939CMZ/@@download/ENCFF939CMZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF096YWD bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120GKA, ENCFF276UEG, ENCFF606LJM 6668733 ENCODE Processing Pipeline 58a21b04cb6a7cbdaac1f444a69cc990 https://www.encodeproject.org/files/ENCFF096YWD/@@download/ENCFF096YWD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF343IVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF326DTU 1316266 ENCODE Processing Pipeline 44f32f227395c77075b3490377ee7a5e https://www.encodeproject.org/files/ENCFF343IVS/@@download/ENCFF343IVS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF199GOC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF489RYB 1305068 ENCODE Processing Pipeline b315d902b8bb25a5a3f36a43312f66ab https://www.encodeproject.org/files/ENCFF199GOC/@@download/ENCFF199GOC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF326DTU bed narrowPeak optimal idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF096YWD, ENCFF419RSJ, ENCFF616KTI, ENCFF973KWO 618744 ENCODE Processing Pipeline 6838172da7d80f920fcdf8a31757b473 https://www.encodeproject.org/files/ENCFF326DTU/@@download/ENCFF326DTU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF489RYB bed narrowPeak conservative idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF096YWD, ENCFF419RSJ, ENCFF616KTI, ENCFF973KWO 611846 ENCODE Processing Pipeline 90fd16cfdcb4d69537e98d290788f1a4 https://www.encodeproject.org/files/ENCFF489RYB/@@download/ENCFF489RYB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF790YFZ bigWig fold change over control ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF044SVI, ENCFF502MJK 386458573 ENCODE Processing Pipeline 47cd46c1aae82bd2c44175ab9439f860 https://www.encodeproject.org/files/ENCFF790YFZ/@@download/ENCFF790YFZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF675BQE bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF008ZST, ENCFF502MJK 6172182 ENCODE Processing Pipeline d9a2eeb7e06bcbcac46dfd02883ed24a https://www.encodeproject.org/files/ENCFF675BQE/@@download/ENCFF675BQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF693FLN bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF008ZST, ENCFF044SVI, ENCFF502MJK 6692011 ENCODE Processing Pipeline 461eadf61bdca7aee6f0480014859151 https://www.encodeproject.org/files/ENCFF693FLN/@@download/ENCFF693FLN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF298WMA bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF675BQE 13098685 ENCODE Processing Pipeline 76614763d5ef4e5230761d4d5b800e23 https://www.encodeproject.org/files/ENCFF298WMA/@@download/ENCFF298WMA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF324TWS bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF416ZYS 12989741 ENCODE Processing Pipeline d7aec19d3118a783f6227cd710606f75 https://www.encodeproject.org/files/ENCFF324TWS/@@download/ENCFF324TWS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF380BTH bigBed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF693FLN 13012157 ENCODE Processing Pipeline 7bbc6aeaedad2c774d5454b4f4b83ce1 https://www.encodeproject.org/files/ENCFF380BTH/@@download/ENCFF380BTH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF495GWW bed narrowPeak conservative idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF416ZYS, ENCFF675BQE, ENCFF693FLN 616445 ENCODE Processing Pipeline 7182fcf6c2cb947b726c04dfba5d7641 https://www.encodeproject.org/files/ENCFF495GWW/@@download/ENCFF495GWW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF755ZCF bed narrowPeak optimal idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF416ZYS, ENCFF675BQE, ENCFF693FLN 619381 ENCODE Processing Pipeline 1125f1f23d710df31354a0cd75855822 https://www.encodeproject.org/files/ENCFF755ZCF/@@download/ENCFF755ZCF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF788NIK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF755ZCF 1319885 ENCODE Processing Pipeline 70ebc76fdf16913f678e24a1b3eca24c https://www.encodeproject.org/files/ENCFF788NIK/@@download/ENCFF788NIK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF971YJB bigWig fold change over control ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF008ZST, ENCFF502MJK 484859551 ENCODE Processing Pipeline 20562a668b9524654ecf70707a7a8017 https://www.encodeproject.org/files/ENCFF971YJB/@@download/ENCFF971YJB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF560AVU bigWig signal p-value ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF008ZST, ENCFF502MJK 675235947 ENCODE Processing Pipeline 5eb7e56cb26ff74780a92e3e9e09b57f https://www.encodeproject.org/files/ENCFF560AVU/@@download/ENCFF560AVU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF156UCC bigWig signal p-value ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF044SVI, ENCFF502MJK 603741828 ENCODE Processing Pipeline c21d8a9485b40954c8956c66f90d7e40 https://www.encodeproject.org/files/ENCFF156UCC/@@download/ENCFF156UCC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF314ZBA bigWig signal p-value ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF008ZST, ENCFF044SVI, ENCFF502MJK 716124954 ENCODE Processing Pipeline 57d9843b4d6f33f3e92505937c13e8df https://www.encodeproject.org/files/ENCFF314ZBA/@@download/ENCFF314ZBA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF482XJV bigWig fold change over control ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF008ZST, ENCFF044SVI, ENCFF502MJK 722862726 ENCODE Processing Pipeline 9d52f275a0276787af07b9f6d231067f https://www.encodeproject.org/files/ENCFF482XJV/@@download/ENCFF482XJV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF416ZYS bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF044SVI, ENCFF502MJK 6027013 ENCODE Processing Pipeline 40fa19d4d5d6e2a5a60a5a1e9d3cbb34 https://www.encodeproject.org/files/ENCFF416ZYS/@@download/ENCFF416ZYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF973GGK bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF495GWW 1312368 ENCODE Processing Pipeline 4031f6c8eba43dad4d27973f3970c3f6 https://www.encodeproject.org/files/ENCFF973GGK/@@download/ENCFF973GGK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF000RGR bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RHD 1086656401 Richard Myers, HAIB 44eef10abfaf01e72c32e0f1f43d8233 https://www.encodeproject.org/files/ENCFF000RGR/@@download/ENCFF000RGR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RGS bigBed broadPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001URB 370847 Richard Myers, HAIB 15c6dd4ed41a39502842ec5268f91d87 https://www.encodeproject.org/files/ENCFF000RGS/@@download/ENCFF000RGS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RGT bigBed broadPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001URC 854957 Richard Myers, HAIB 65200414212f69a67d430b5736439b76 https://www.encodeproject.org/files/ENCFF000RGT/@@download/ENCFF000RGT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RGU bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RHF 1146468957 Richard Myers, HAIB ebf26d9f63b3d7da25587a17763f1ec5 https://www.encodeproject.org/files/ENCFF000RGU/@@download/ENCFF000RGU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RGW bigWig raw signal ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 9213719 Richard Myers, HAIB c2261aca60bee4cd1861a50358465c30 https://www.encodeproject.org/files/ENCFF000RGW/@@download/ENCFF000RGW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RGX bigWig raw signal ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 23355078 Richard Myers, HAIB 3a9911949cb76ba2aa66080b0cb530c8 https://www.encodeproject.org/files/ENCFF000RGX/@@download/ENCFF000RGX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000RHD fastq reads ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 980479180 Richard Myers, HAIB ecc58a30e029d1905fb4058108c4fe2b https://www.encodeproject.org/files/ENCFF000RHD/@@download/ENCFF000RHD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RHF fastq reads ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1128242927 Richard Myers, HAIB 1ec1a93a14f7c8ceac0534d7cb49089f https://www.encodeproject.org/files/ENCFF000RHF/@@download/ENCFF000RHF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001URB bed broadPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 231362 Richard Myers, HAIB fbeae2014f48ea176a0bb0bbdbbbdbbc https://www.encodeproject.org/files/ENCFF001URB/@@download/ENCFF001URB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001URC bed broadPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 460187 Richard Myers, HAIB ce32addc8733e81000f3ee5fec8bf610 https://www.encodeproject.org/files/ENCFF001URC/@@download/ENCFF001URC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CNT bed narrowPeak optimal idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 728239 ENCODE Consortium Analysis Working Group b9dfea54d51b2cbafe754f0cff688fb3 https://www.encodeproject.org/files/ENCFF002CNT/@@download/ENCFF002CNT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF627RRV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNT 1652068 ENCODE Consortium 1761402bc42a203de0cd3eddc08672af https://www.encodeproject.org/files/ENCFF627RRV/@@download/ENCFF627RRV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF519TWC bam unfiltered alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHD, ENCFF643CGH 1314648099 ENCODE Processing Pipeline 04f68b5cc6d3868530baa7bbb8150b27 https://www.encodeproject.org/files/ENCFF519TWC/@@download/ENCFF519TWC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF619FIE bam unfiltered alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHF, ENCFF643CGH 1429315678 ENCODE Processing Pipeline 95fd74db2d5bb24fc83e2e456048c350 https://www.encodeproject.org/files/ENCFF619FIE/@@download/ENCFF619FIE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF615LHE bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHF, ENCFF643CGH 670372018 ENCODE Processing Pipeline 8ba23fac29c083f98b6888f50f2d240a https://www.encodeproject.org/files/ENCFF615LHE/@@download/ENCFF615LHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF194DLC bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHD, ENCFF643CGH 818194425 ENCODE Processing Pipeline a0a368889f30f8625b6e8f19085bf032 https://www.encodeproject.org/files/ENCFF194DLC/@@download/ENCFF194DLC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF502LIO bam unfiltered alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHD, ENCFF807MUK 1307421438 ENCODE Processing Pipeline 196d6a556c4ef8090d64cad6467059b7 https://www.encodeproject.org/files/ENCFF502LIO/@@download/ENCFF502LIO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF196BLJ bam unfiltered alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHF, ENCFF807MUK 1422084391 ENCODE Processing Pipeline 4e77a394a22bcbf6ee80c8ee49e21c5d https://www.encodeproject.org/files/ENCFF196BLJ/@@download/ENCFF196BLJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF266NHV bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHD, ENCFF807MUK 818563979 ENCODE Processing Pipeline 25e3586c559dfadc284bfa3104143629 https://www.encodeproject.org/files/ENCFF266NHV/@@download/ENCFF266NHV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF117IWF bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHF, ENCFF807MUK 670879059 ENCODE Processing Pipeline 165d449f1a3343f277edfba631cc2b3e https://www.encodeproject.org/files/ENCFF117IWF/@@download/ENCFF117IWF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF007HGJ bigBed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF986CUM 10612652 ENCODE Processing Pipeline e8979d29e334b52ec1beea2473212d82 https://www.encodeproject.org/files/ENCFF007HGJ/@@download/ENCFF007HGJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF641UVX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF170WYL 637013 ENCODE Processing Pipeline 38bbb95f4686cbb603e74a67484b5251 https://www.encodeproject.org/files/ENCFF641UVX/@@download/ENCFF641UVX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF004ISQ bigWig fold change over control ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266NHV, ENCFF960JYT 449567677 ENCODE Processing Pipeline c7a5f37023115aa2025b917a25c02845 https://www.encodeproject.org/files/ENCFF004ISQ/@@download/ENCFF004ISQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF288PLI bigBed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF976NKK 10974464 ENCODE Processing Pipeline ef2dc70785cce1dd21ae77a6d7e4ce97 https://www.encodeproject.org/files/ENCFF288PLI/@@download/ENCFF288PLI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF491ONA bigBed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF885ILM 11292911 ENCODE Processing Pipeline 14b87a2c031b817d55fb58919abc0e12 https://www.encodeproject.org/files/ENCFF491ONA/@@download/ENCFF491ONA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF771SLB bigWig signal p-value ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266NHV, ENCFF960JYT 568931751 ENCODE Processing Pipeline c3e8850b33a4b2a4d04ef22a89e81242 https://www.encodeproject.org/files/ENCFF771SLB/@@download/ENCFF771SLB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF986CUM bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117IWF, ENCFF960JYT 4368560 ENCODE Processing Pipeline 24ebbcac2df7f45c270d780b00ed9e59 https://www.encodeproject.org/files/ENCFF986CUM/@@download/ENCFF986CUM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF885ILM bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117IWF, ENCFF266NHV, ENCFF960JYT 5100679 ENCODE Processing Pipeline 4b8da86974f2587bc32cbdc5c1debd31 https://www.encodeproject.org/files/ENCFF885ILM/@@download/ENCFF885ILM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF082BMM bigWig fold change over control ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117IWF, ENCFF266NHV, ENCFF960JYT 660687341 ENCODE Processing Pipeline 0898732f75e6a9bfd06314136c078c51 https://www.encodeproject.org/files/ENCFF082BMM/@@download/ENCFF082BMM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF976NKK bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266NHV, ENCFF960JYT 4626514 ENCODE Processing Pipeline fab28693e6e55f38de5c28abf82d891e https://www.encodeproject.org/files/ENCFF976NKK/@@download/ENCFF976NKK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF470DGN bigWig signal p-value ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117IWF, ENCFF960JYT 494381043 ENCODE Processing Pipeline 56fb2cee7ca3b409c02e286a964881d7 https://www.encodeproject.org/files/ENCFF470DGN/@@download/ENCFF470DGN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF003YPJ bigWig fold change over control ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117IWF, ENCFF960JYT 339187103 ENCODE Processing Pipeline 21eeb0e40c466a1a9146a5c32d2972e2 https://www.encodeproject.org/files/ENCFF003YPJ/@@download/ENCFF003YPJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF170WYL bed narrowPeak conservative idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF885ILM, ENCFF976NKK, ENCFF986CUM 407725 ENCODE Processing Pipeline ff0679060e2fd7e54f80f5a0780bd548 https://www.encodeproject.org/files/ENCFF170WYL/@@download/ENCFF170WYL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF784SHH bigWig signal p-value ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117IWF, ENCFF266NHV, ENCFF960JYT 596469901 ENCODE Processing Pipeline c7a2670c633a7905688fedd654db72c8 https://www.encodeproject.org/files/ENCFF784SHH/@@download/ENCFF784SHH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF903ZMF bed narrowPeak optimal idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF885ILM, ENCFF976NKK, ENCFF986CUM 482518 ENCODE Processing Pipeline 765dd9a4fdebd8971d21488e7b273e3a https://www.encodeproject.org/files/ENCFF903ZMF/@@download/ENCFF903ZMF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF321MQH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF903ZMF 900461 ENCODE Processing Pipeline 2b12c553cf4877c6473e0dfbb8be2862 https://www.encodeproject.org/files/ENCFF321MQH/@@download/ENCFF321MQH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000ZQU bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VQY 736794 Michael Snyder, Stanford 4fea17b525a5f93b0f0ee3be8e0d7b2f https://www.encodeproject.org/files/ENCFF000ZQU/@@download/ENCFF000ZQU.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZQV fastq reads ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 985179546 Michael Snyder, Stanford ab5b952fdb599948ca7587b4996f0790 https://www.encodeproject.org/files/ENCFF000ZQV/@@download/ENCFF000ZQV.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQO/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZQY fastq reads ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 991053967 Michael Snyder, Stanford ae85a3ee3666b7bbd6df0ea0076cc838 https://www.encodeproject.org/files/ENCFF000ZQY/@@download/ENCFF000ZQY.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQQ/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZRA bigWig signal ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 631708741 Michael Snyder, Stanford 6103cfd4dde79c8076b50cfd4290693d https://www.encodeproject.org/files/ENCFF000ZRA/@@download/ENCFF000ZRA.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZRB bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 1 565527561 Michael Snyder, Stanford 8a84ce82034f07078e8493c294c41759 https://www.encodeproject.org/files/ENCFF000ZRB/@@download/ENCFF000ZRB.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZRC bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 1 535465955 Michael Snyder, Stanford cc4dc252430b6fd86312f54b5af6e9f2 https://www.encodeproject.org/files/ENCFF000ZRC/@@download/ENCFF000ZRC.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VQY bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 352402 Michael Snyder, Stanford f88c5b81d50648f45c26ddca3bc9711c https://www.encodeproject.org/files/ENCFF001VQY/@@download/ENCFF001VQY.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF017ICG bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQY, ENCFF643CGH 738979337 ENCODE Processing Pipeline 537be262ca266352e2b1695b8813154c https://www.encodeproject.org/files/ENCFF017ICG/@@download/ENCFF017ICG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF394ZFD bam unfiltered alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQV, ENCFF643CGH 1127376228 ENCODE Processing Pipeline 4dd5b4009341809929d4a0790dd1c26a https://www.encodeproject.org/files/ENCFF394ZFD/@@download/ENCFF394ZFD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392FUM bam unfiltered alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQY, ENCFF643CGH 1118421772 ENCODE Processing Pipeline c8af6f16a905b6d3b3b28f11da502845 https://www.encodeproject.org/files/ENCFF392FUM/@@download/ENCFF392FUM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF655YHQ bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQV, ENCFF643CGH 779458256 ENCODE Processing Pipeline b2dcdbac716f2d9f970a7fabc7c7f79a https://www.encodeproject.org/files/ENCFF655YHQ/@@download/ENCFF655YHQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF120VJO bam unfiltered alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQY, ENCFF807MUK 1113081588 ENCODE Processing Pipeline 0b830ce6cfa07dfe33ffd23777013e8b https://www.encodeproject.org/files/ENCFF120VJO/@@download/ENCFF120VJO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF992CYL bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQY, ENCFF807MUK 739248511 ENCODE Processing Pipeline 7177f85254753297bda5a812b283e0e8 https://www.encodeproject.org/files/ENCFF992CYL/@@download/ENCFF992CYL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352DTM bam unfiltered alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQV, ENCFF807MUK 1123041383 ENCODE Processing Pipeline c13775a535ddeb32d36e789d70646820 https://www.encodeproject.org/files/ENCFF352DTM/@@download/ENCFF352DTM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF167WNW bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQV, ENCFF807MUK 779725023 ENCODE Processing Pipeline 754ac19b3bd92dc2723265e4d7fe3651 https://www.encodeproject.org/files/ENCFF167WNW/@@download/ENCFF167WNW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF580MKM bigWig signal p-value ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP, ENCFF992CYL 630528562 ENCODE Processing Pipeline 8cd11479a9dce132e1969f1af75ac423 https://www.encodeproject.org/files/ENCFF580MKM/@@download/ENCFF580MKM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF342EXG bigWig fold change over control ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP 432596144 ENCODE Processing Pipeline aa101d5f2841611c9b86757f9efafbd7 https://www.encodeproject.org/files/ENCFF342EXG/@@download/ENCFF342EXG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF398EYK bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF992CYL 5017089 ENCODE Processing Pipeline 20de1c2c3d31c1351fb6eec9411926c4 https://www.encodeproject.org/files/ENCFF398EYK/@@download/ENCFF398EYK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF965GWV bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF830ZWP 11188005 ENCODE Processing Pipeline 6f9afbc3b4c32f90820bd8787e50baaa https://www.encodeproject.org/files/ENCFF965GWV/@@download/ENCFF965GWV.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF752SSO bigWig signal p-value ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP 562084584 ENCODE Processing Pipeline 51a9ecc38c50f665b9952cfa2408c053 https://www.encodeproject.org/files/ENCFF752SSO/@@download/ENCFF752SSO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF057ORD bigWig signal p-value ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF992CYL 436406989 ENCODE Processing Pipeline 0aad2d594d1739ef4f47af28e205518c https://www.encodeproject.org/files/ENCFF057ORD/@@download/ENCFF057ORD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF715DSD bigWig fold change over control ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF992CYL 419839415 ENCODE Processing Pipeline e73db67bd51454b466358ea2b125d9ca https://www.encodeproject.org/files/ENCFF715DSD/@@download/ENCFF715DSD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF424SFJ bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF413ZYK 11577854 ENCODE Processing Pipeline c5bc629ac4769c69eae498515959aab1 https://www.encodeproject.org/files/ENCFF424SFJ/@@download/ENCFF424SFJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF128ZDJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF667QYA 761258 ENCODE Processing Pipeline 7695cc00c73c04403a2d7e153cb73909 https://www.encodeproject.org/files/ENCFF128ZDJ/@@download/ENCFF128ZDJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF673PTK bed narrowPeak optimal idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF398EYK, ENCFF413ZYK, ENCFF830ZWP 555908 ENCODE Processing Pipeline 152128b76890ff621885ed224a0216df https://www.encodeproject.org/files/ENCFF673PTK/@@download/ENCFF673PTK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF503FCH bigWig fold change over control ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP, ENCFF992CYL 707972946 ENCODE Processing Pipeline 39f14a8e8be3eda7d18c27c542895ad1 https://www.encodeproject.org/files/ENCFF503FCH/@@download/ENCFF503FCH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509DHS bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF398EYK 11270413 ENCODE Processing Pipeline 92fd96933bf9a4093d9eac3a9f172367 https://www.encodeproject.org/files/ENCFF509DHS/@@download/ENCFF509DHS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF830ZWP bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP 5161145 ENCODE Processing Pipeline db81a0b6127cddbbd67d7fc367ccb2cf https://www.encodeproject.org/files/ENCFF830ZWP/@@download/ENCFF830ZWP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF413ZYK bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP, ENCFF992CYL 5652705 ENCODE Processing Pipeline ca0e07519b560bd1ffc7ab8245634941 https://www.encodeproject.org/files/ENCFF413ZYK/@@download/ENCFF413ZYK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF667QYA bed narrowPeak conservative idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF398EYK, ENCFF413ZYK, ENCFF830ZWP 422715 ENCODE Processing Pipeline 307cde708d82939eeb7038d2ca88974a https://www.encodeproject.org/files/ENCFF667QYA/@@download/ENCFF667QYA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF149GQH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF673PTK 951569 ENCODE Processing Pipeline b2a90128bd86037e83fd7c8c729b0377 https://www.encodeproject.org/files/ENCFF149GQH/@@download/ENCFF149GQH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF309DSW bigWig signal p-value ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF017ICG, ENCFF144BVJ, ENCFF282PXC 460917966 ENCODE Processing Pipeline 7841b88e82c5bb772ae3ecc939eed096 https://www.encodeproject.org/files/ENCFF309DSW/@@download/ENCFF309DSW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF969FAZ bigWig fold change over control ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF017ICG, ENCFF144BVJ, ENCFF282PXC, ENCFF655YHQ 725614427 ENCODE Processing Pipeline 2676ee2e232457653df14182687fa432 https://www.encodeproject.org/files/ENCFF969FAZ/@@download/ENCFF969FAZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF693HAG bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF017ICG, ENCFF144BVJ, ENCFF282PXC, ENCFF655YHQ 5650715 ENCODE Processing Pipeline 54d4891c6fa30ed6d59ee96a5d9bdac3 https://www.encodeproject.org/files/ENCFF693HAG/@@download/ENCFF693HAG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF109HIE bed narrowPeak conservative idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF177MTC, ENCFF313VAP, ENCFF419RSJ, ENCFF693HAG 421793 ENCODE Processing Pipeline d6aed39d087cbdbd9dbeaadd07545550 https://www.encodeproject.org/files/ENCFF109HIE/@@download/ENCFF109HIE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF187QQB bed narrowPeak optimal idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF177MTC, ENCFF313VAP, ENCFF419RSJ, ENCFF693HAG 561007 ENCODE Processing Pipeline aa706c063bf0250761c81d2333908568 https://www.encodeproject.org/files/ENCFF187QQB/@@download/ENCFF187QQB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF171HRB bigWig fold change over control ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF017ICG, ENCFF144BVJ, ENCFF282PXC 408159022 ENCODE Processing Pipeline 71d8ac9bba3cf376c8c8f31577d4e063 https://www.encodeproject.org/files/ENCFF171HRB/@@download/ENCFF171HRB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF409LXK bigWig signal p-value ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF017ICG, ENCFF144BVJ, ENCFF282PXC, ENCFF655YHQ 639650938 ENCODE Processing Pipeline 23735a1fc5534591d5d07eee8d066d84 https://www.encodeproject.org/files/ENCFF409LXK/@@download/ENCFF409LXK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF313VAP bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF655YHQ 5159579 ENCODE Processing Pipeline 00e71e70063a70f0d91ffd4fc40e8caa https://www.encodeproject.org/files/ENCFF313VAP/@@download/ENCFF313VAP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF717QHE bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313VAP 11190179 ENCODE Processing Pipeline 00bc4cedbdd2c1885377ccbaba88ab22 https://www.encodeproject.org/files/ENCFF717QHE/@@download/ENCFF717QHE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF698CVX bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF177MTC 11236913 ENCODE Processing Pipeline a455c5a1035bec1ef0cea05174ff3012 https://www.encodeproject.org/files/ENCFF698CVX/@@download/ENCFF698CVX.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF502MQP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF187QQB 957413 ENCODE Processing Pipeline 21e65b88fe89403938d1f2d6af245bf6 https://www.encodeproject.org/files/ENCFF502MQP/@@download/ENCFF502MQP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF391WNW bigWig fold change over control ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF655YHQ 436498888 ENCODE Processing Pipeline 1350463fba517964c0763b742f6199a8 https://www.encodeproject.org/files/ENCFF391WNW/@@download/ENCFF391WNW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF088OCU bigBed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF693HAG 11580977 ENCODE Processing Pipeline 18d6dcba91a172d0c2ab89918057d8eb https://www.encodeproject.org/files/ENCFF088OCU/@@download/ENCFF088OCU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF833JKZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF109HIE 760370 ENCODE Processing Pipeline 63ac6ca4683e3fa2b079a4197167b6e5 https://www.encodeproject.org/files/ENCFF833JKZ/@@download/ENCFF833JKZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF966LSY bigWig signal p-value ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF655YHQ 485134636 ENCODE Processing Pipeline f8d74476a4615971f47a8be27c1c498d https://www.encodeproject.org/files/ENCFF966LSY/@@download/ENCFF966LSY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF177MTC bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF017ICG, ENCFF144BVJ, ENCFF282PXC 4989489 ENCODE Processing Pipeline 5f5f804e3d1bdca2e16db5a064459892 https://www.encodeproject.org/files/ENCFF177MTC/@@download/ENCFF177MTC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YLT bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 1 585348139 Michael Snyder, Stanford 9c5be3e035b833b2ac0d01b79cf276b1 https://www.encodeproject.org/files/ENCFF000YLT/@@download/ENCFF000YLT.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YLU bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 1 594080295 Michael Snyder, Stanford ae37f275fa86b101cd3325a460ef26da https://www.encodeproject.org/files/ENCFF000YLU/@@download/ENCFF000YLU.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YLV bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VMZ 4325938 Michael Snyder, Stanford 39a7677ee8cda57745096b65dd9be08f https://www.encodeproject.org/files/ENCFF000YLV/@@download/ENCFF000YLV.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YLW fastq reads ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1247048140 Michael Snyder, Stanford df317c6d6834e7caed395554a8fb9f99 https://www.encodeproject.org/files/ENCFF000YLW/@@download/ENCFF000YLW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YLY fastq reads ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1209979886 Michael Snyder, Stanford 60a1aaa1423bd07c27962531dc85fe3f https://www.encodeproject.org/files/ENCFF000YLY/@@download/ENCFF000YLY.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YMA bigWig signal ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 429000333 Michael Snyder, Stanford 6509b380b70220484f8b6da053779d34 https://www.encodeproject.org/files/ENCFF000YMA/@@download/ENCFF000YMA.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VMZ bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1633362 Michael Snyder, Stanford e3fee0039ab77f91306e2853aafa3005 https://www.encodeproject.org/files/ENCFF001VMZ/@@download/ENCFF001VMZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CWL bed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1125159 ENCODE Consortium Analysis Working Group 7c774d345a596a6b268fcab76040507a https://www.encodeproject.org/files/ENCFF002CWL/@@download/ENCFF002CWL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF595ZII bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CWL 2267325 ENCODE Consortium 2b2f6640b06b7fc7a40bc06af437263d https://www.encodeproject.org/files/ENCFF595ZII/@@download/ENCFF595ZII.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF442SVG bam unfiltered alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000YLW, ENCFF643CGH 1343067545 ENCODE Processing Pipeline 3538e327e757c870d5c503e651b798d0 https://www.encodeproject.org/files/ENCFF442SVG/@@download/ENCFF442SVG.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF650KWF bam unfiltered alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000YLY, ENCFF643CGH 1341278621 ENCODE Processing Pipeline 2e8fa7478753c9a280838c61101fca35 https://www.encodeproject.org/files/ENCFF650KWF/@@download/ENCFF650KWF.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF198CVB bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLW, ENCFF643CGH 876019621 ENCODE Processing Pipeline 4bb960de776e79168519be328d422b70 https://www.encodeproject.org/files/ENCFF198CVB/@@download/ENCFF198CVB.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF488CXC bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLY, ENCFF643CGH 910627192 ENCODE Processing Pipeline 0ef9641acc39df50dbef730925795f46 https://www.encodeproject.org/files/ENCFF488CXC/@@download/ENCFF488CXC.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF125EKW bigWig fold change over control ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF488CXC 436211895 ENCODE Processing Pipeline 24cbf5ef7dd2ffe6b41fe9ef6cf859b7 https://www.encodeproject.org/files/ENCFF125EKW/@@download/ENCFF125EKW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF973WXW bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF488CXC 4799039 ENCODE Processing Pipeline bc4273f7f883ff050b00b56cb922128e https://www.encodeproject.org/files/ENCFF973WXW/@@download/ENCFF973WXW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF265DRT bigWig signal p-value ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF488CXC 482613985 ENCODE Processing Pipeline b4572c9c8b6a1bb7f0c52c5a36c02d25 https://www.encodeproject.org/files/ENCFF265DRT/@@download/ENCFF265DRT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF940DPJ bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF175EOP 9409226 ENCODE Processing Pipeline 0b59a2bac9609e6e2e90bb2c37f126e1 https://www.encodeproject.org/files/ENCFF940DPJ/@@download/ENCFF940DPJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF092CEL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF041ODC 1515066 ENCODE Processing Pipeline bfdf9869f23c2af879de72eea1bd3ea2 https://www.encodeproject.org/files/ENCFF092CEL/@@download/ENCFF092CEL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF439TAU bigWig signal p-value ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF198CVB 465073092 ENCODE Processing Pipeline c65d19c17d86b9f6e6c39c9200acc7e5 https://www.encodeproject.org/files/ENCFF439TAU/@@download/ENCFF439TAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF322EGW bigWig signal p-value ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF198CVB, ENCFF488CXC 546299763 ENCODE Processing Pipeline 104fb8a78c4185fa4344db89a4ddea17 https://www.encodeproject.org/files/ENCFF322EGW/@@download/ENCFF322EGW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF894ZLN bigWig fold change over control ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF198CVB 418425641 ENCODE Processing Pipeline 4156dcf114957df76a07050131211588 https://www.encodeproject.org/files/ENCFF894ZLN/@@download/ENCFF894ZLN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF050CCI bigWig fold change over control ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF198CVB, ENCFF488CXC 712440157 ENCODE Processing Pipeline 0b24b56808a00ab840f3b76888867fac https://www.encodeproject.org/files/ENCFF050CCI/@@download/ENCFF050CCI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF694KDC bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF198CVB 4688825 ENCODE Processing Pipeline fb2ecaaa5017a77872fc0855a617f2bd https://www.encodeproject.org/files/ENCFF694KDC/@@download/ENCFF694KDC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF175EOP bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF198CVB, ENCFF488CXC 4501560 ENCODE Processing Pipeline 71a317358eef60f6d10dee652ae6db7b https://www.encodeproject.org/files/ENCFF175EOP/@@download/ENCFF175EOP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF488EPU bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF694KDC 11127430 ENCODE Processing Pipeline fbd4d817cc1fbcf3aa0f2ecbcaa886bd https://www.encodeproject.org/files/ENCFF488EPU/@@download/ENCFF488EPU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF800IHM bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF973WXW 11058644 ENCODE Processing Pipeline 94193662a0f2d4c5fc7109dbeb6a530d https://www.encodeproject.org/files/ENCFF800IHM/@@download/ENCFF800IHM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF041ODC bed narrowPeak conservative idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF175EOP, ENCFF419RSJ, ENCFF694KDC, ENCFF973WXW 870798 ENCODE Processing Pipeline 0685e5699688caba74c62ee3c87090a9 https://www.encodeproject.org/files/ENCFF041ODC/@@download/ENCFF041ODC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF396BZQ bed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF175EOP, ENCFF419RSJ, ENCFF694KDC, ENCFF973WXW 912199 ENCODE Processing Pipeline ec6d58713b0306f762dbc4cab091df71 https://www.encodeproject.org/files/ENCFF396BZQ/@@download/ENCFF396BZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF651WYF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF396BZQ 1570949 ENCODE Processing Pipeline 03f9f61278a78447e6a868d439f248d1 https://www.encodeproject.org/files/ENCFF651WYF/@@download/ENCFF651WYF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF496SZR bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLY, ENCFF807MUK 911289908 ENCODE Processing Pipeline cbad410c71b854bdb7576e8e12d5a0f1 https://www.encodeproject.org/files/ENCFF496SZR/@@download/ENCFF496SZR.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF298LBZ bam unfiltered alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLY, ENCFF807MUK 1336506239 ENCODE Processing Pipeline 9e48411c43e54131b98516be8545d2ca https://www.encodeproject.org/files/ENCFF298LBZ/@@download/ENCFF298LBZ.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF835DYU bam unfiltered alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLW, ENCFF807MUK 1338156396 ENCODE Processing Pipeline 976e5e2306407f6c199a2af26806d695 https://www.encodeproject.org/files/ENCFF835DYU/@@download/ENCFF835DYU.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF487UYG bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLW, ENCFF807MUK 876636084 ENCODE Processing Pipeline 943c2ad82654a7d8cca7abd29e585c4f https://www.encodeproject.org/files/ENCFF487UYG/@@download/ENCFF487UYG.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF261HAP bigWig signal p-value ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 429965446 ENCODE Processing Pipeline 9604f9c1a899d2d1869b9d10a7316454 https://www.encodeproject.org/files/ENCFF261HAP/@@download/ENCFF261HAP.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF843MQQ bigWig signal p-value ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF487UYG, ENCFF710NTS 450178353 ENCODE Processing Pipeline 0252f6d5c430607474fffcf4b47161f3 https://www.encodeproject.org/files/ENCFF843MQQ/@@download/ENCFF843MQQ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF545UAE bigWig fold change over control ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF487UYG, ENCFF710NTS 418903851 ENCODE Processing Pipeline fcc46b2384498a571f5d278d007670ea https://www.encodeproject.org/files/ENCFF545UAE/@@download/ENCFF545UAE.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF468HJA bigWig signal p-value ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF487UYG, ENCFF496SZR, ENCFF710NTS 581535890 ENCODE Processing Pipeline bccd815ac0aef78aa90af0f11059466f https://www.encodeproject.org/files/ENCFF468HJA/@@download/ENCFF468HJA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF061IVP bigWig fold change over control ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 436459110 ENCODE Processing Pipeline f886ff90c7ac253a32f5c04d6eb71812 https://www.encodeproject.org/files/ENCFF061IVP/@@download/ENCFF061IVP.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF545EHA bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 4817312 ENCODE Processing Pipeline f537e875ce6fc4c5e3a7015a07e63207 https://www.encodeproject.org/files/ENCFF545EHA/@@download/ENCFF545EHA.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF652VUV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF738TKN 1559780 ENCODE Processing Pipeline 45248395018947a8478a1c5a0b794f93 https://www.encodeproject.org/files/ENCFF652VUV/@@download/ENCFF652VUV.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF933ZLL bigWig fold change over control ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF487UYG, ENCFF496SZR, ENCFF710NTS 727963098 ENCODE Processing Pipeline 688dd84c7821fdcba7a237b0d0bfcf24 https://www.encodeproject.org/files/ENCFF933ZLL/@@download/ENCFF933ZLL.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF264LXL bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF487UYG, ENCFF496SZR, ENCFF710NTS 4182075 ENCODE Processing Pipeline d37764996284c4fb0667c44061e5406b https://www.encodeproject.org/files/ENCFF264LXL/@@download/ENCFF264LXL.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF559HEE bed narrowPeak conservative idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF264LXL, ENCFF545EHA, ENCFF595QHF 866636 ENCODE Processing Pipeline 3f577d118c3c2ae7f868e48972c1ff26 https://www.encodeproject.org/files/ENCFF559HEE/@@download/ENCFF559HEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF985RSI bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF264LXL 8666822 ENCODE Processing Pipeline 86762b9db51cd07bb16f3419178f8b5e https://www.encodeproject.org/files/ENCFF985RSI/@@download/ENCFF985RSI.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF442VVV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF559HEE 1508265 ENCODE Processing Pipeline 087cb3509ee96bd17488ad53a53322c6 https://www.encodeproject.org/files/ENCFF442VVV/@@download/ENCFF442VVV.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF950ANB bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF595QHF 11121615 ENCODE Processing Pipeline 11486020a5d918a1b88bc2a04d26d217 https://www.encodeproject.org/files/ENCFF950ANB/@@download/ENCFF950ANB.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF738TKN bed narrowPeak optimal idr thresholded peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF264LXL, ENCFF545EHA, ENCFF595QHF 905102 ENCODE Processing Pipeline 8635b84f3c5785702257302d4b4b8f8a https://www.encodeproject.org/files/ENCFF738TKN/@@download/ENCFF738TKN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF595QHF bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF487UYG, ENCFF710NTS 4688230 ENCODE Processing Pipeline be40a763bd65492b830c3cf768a541ad https://www.encodeproject.org/files/ENCFF595QHF/@@download/ENCFF595QHF.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF565FWB bigBed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545EHA 11073252 ENCODE Processing Pipeline 1897be4b2d7d780f0b9f3809b8a5806f https://www.encodeproject.org/files/ENCFF565FWB/@@download/ENCFF565FWB.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTS bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001VKK 5941414 Michael Snyder, Stanford f13e954beaf990923f778e55dcbe95cd https://www.encodeproject.org/files/ENCFF000XTS/@@download/ENCFF000XTS.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTT bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XUL 624240150 Michael Snyder, Stanford 611a221f6e4c64f65d308d740d29e637 https://www.encodeproject.org/files/ENCFF000XTT/@@download/ENCFF000XTT.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTU bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XUK 627896226 Michael Snyder, Stanford 63356c8b75b3c5d0843dd214cc60267b https://www.encodeproject.org/files/ENCFF000XTU/@@download/ENCFF000XTU.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTV bigWig signal ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000XTT, ENCFF000XTU 467976286 Michael Snyder, Stanford 30c7efdb9cb534718169e2e119221833 https://www.encodeproject.org/files/ENCFF000XTV/@@download/ENCFF000XTV.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUK fastq reads ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1340397648 Michael Snyder, Stanford c52f4461f37d955a63889c624b5dc844 https://www.encodeproject.org/files/ENCFF000XUK/@@download/ENCFF000XUK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUL fastq reads ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1430096614 Michael Snyder, Stanford 16ac8536ae171cea76eab0481d3497e8 https://www.encodeproject.org/files/ENCFF000XUL/@@download/ENCFF000XUL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKK bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000XTT, ENCFF000XTU 2777071 Michael Snyder, Stanford 565c0774327c72e96483e6fe37d81984 https://www.encodeproject.org/files/ENCFF001VKK/@@download/ENCFF001VKK.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF002CUH bed narrowPeak optimal idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000XTT, ENCFF000XTU 1495650 ENCODE Consortium Analysis Working Group cd32b8a67b4dd94e08b140c8274ccf9f https://www.encodeproject.org/files/ENCFF002CUH/@@download/ENCFF002CUH.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF539WMC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF002CUH 2871330 ENCODE Consortium a2dc100b81732013bbf281f3ae997ca9 https://www.encodeproject.org/files/ENCFF539WMC/@@download/ENCFF539WMC.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF251HGY bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XUK, ENCFF807MUK 1055442532 ENCODE Processing Pipeline f0a879b704635dca0579f8fd05794eec https://www.encodeproject.org/files/ENCFF251HGY/@@download/ENCFF251HGY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF588POK bam unfiltered alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XUK, ENCFF807MUK 1562641790 ENCODE Processing Pipeline 1263fee420c7a97306124c6065934ce4 https://www.encodeproject.org/files/ENCFF588POK/@@download/ENCFF588POK.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF007BXW bam unfiltered alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUL, ENCFF807MUK 1688606937 ENCODE Processing Pipeline 6922c8a45859e70749ae4f4db48935bd https://www.encodeproject.org/files/ENCFF007BXW/@@download/ENCFF007BXW.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF829RTX bigWig fold change over control ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF126OVJ, ENCFF251HGY 903263614 ENCODE Processing Pipeline 838c4ef8b47fd82c09ff5676de854e86 https://www.encodeproject.org/files/ENCFF829RTX/@@download/ENCFF829RTX.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF126OVJ bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUL, ENCFF807MUK 1133000675 ENCODE Processing Pipeline e11a6c36cbd88d9c2638b2bc3e267a6e https://www.encodeproject.org/files/ENCFF126OVJ/@@download/ENCFF126OVJ.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF150WRC bigWig signal p-value ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF126OVJ 576079071 ENCODE Processing Pipeline bdf698973705f166f851af62a1f95a3e https://www.encodeproject.org/files/ENCFF150WRC/@@download/ENCFF150WRC.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF070SKM bigWig signal p-value ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF251HGY 723257888 ENCODE Processing Pipeline 9029b2c79051e56b15ed3b22846fc140 https://www.encodeproject.org/files/ENCFF070SKM/@@download/ENCFF070SKM.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF988ZUO bigWig signal p-value ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF126OVJ, ENCFF251HGY 734436767 ENCODE Processing Pipeline f8a213a6d6dc64bf0e0410147a4cba4a https://www.encodeproject.org/files/ENCFF988ZUO/@@download/ENCFF988ZUO.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF016LSH bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF251HGY 5711721 ENCODE Processing Pipeline 8682495f78f9233d8126f6dc031fc4e4 https://www.encodeproject.org/files/ENCFF016LSH/@@download/ENCFF016LSH.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF534JSP bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF016LSH 12104841 ENCODE Processing Pipeline 28f73f70fabe8155fb29eb461d9749d2 https://www.encodeproject.org/files/ENCFF534JSP/@@download/ENCFF534JSP.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF814UDQ bed narrowPeak conservative idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF016LSH, ENCFF067XYR, ENCFF092FFG 1184168 ENCODE Processing Pipeline f80a6a536053064385449a80aa5fe678 https://www.encodeproject.org/files/ENCFF814UDQ/@@download/ENCFF814UDQ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF124YUO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF814UDQ 1993326 ENCODE Processing Pipeline 847209fcdfaefe8c9a92d8b672ed4fdf https://www.encodeproject.org/files/ENCFF124YUO/@@download/ENCFF124YUO.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF352MVO bigWig fold change over control ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF126OVJ 557545997 ENCODE Processing Pipeline 6d0c161b006534bc9265c4eb8863d126 https://www.encodeproject.org/files/ENCFF352MVO/@@download/ENCFF352MVO.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF396ETS bigWig fold change over control ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF251HGY 547486621 ENCODE Processing Pipeline cb18ea33b12c14490139e28b05c2b775 https://www.encodeproject.org/files/ENCFF396ETS/@@download/ENCFF396ETS.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF092FFG bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF126OVJ 5716680 ENCODE Processing Pipeline 8d889c076bae1bef1cc6daa795e883d4 https://www.encodeproject.org/files/ENCFF092FFG/@@download/ENCFF092FFG.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF067XYR bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF126OVJ, ENCFF251HGY 6608029 ENCODE Processing Pipeline 9b3b9086470ce1a4c8e9c84679cb2e18 https://www.encodeproject.org/files/ENCFF067XYR/@@download/ENCFF067XYR.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF095HBX bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092FFG 11998255 ENCODE Processing Pipeline c771cd25aa39fdc4c207c733554f2e7e https://www.encodeproject.org/files/ENCFF095HBX/@@download/ENCFF095HBX.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF827QWK bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF067XYR 12346125 ENCODE Processing Pipeline 4e79d5e575dd2e3bcfa18b1cc42465e1 https://www.encodeproject.org/files/ENCFF827QWK/@@download/ENCFF827QWK.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF718CQQ bed narrowPeak optimal idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF016LSH, ENCFF067XYR, ENCFF092FFG 1231199 ENCODE Processing Pipeline c064056c9a2aee65e331abb72aa9a0e8 https://www.encodeproject.org/files/ENCFF718CQQ/@@download/ENCFF718CQQ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF433UUO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF718CQQ 2051770 ENCODE Processing Pipeline 9ef383560b274c30a687475f12518ba6 https://www.encodeproject.org/files/ENCFF433UUO/@@download/ENCFF433UUO.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF680GLU bam unfiltered alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XUK, ENCFF643CGH 1570757208 ENCODE Processing Pipeline 6182cbc2067dc5c5a871a11ff7499a85 https://www.encodeproject.org/files/ENCFF680GLU/@@download/ENCFF680GLU.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF122DRL bam unfiltered alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUL, ENCFF643CGH 1696816062 ENCODE Processing Pipeline 06753bbf95079326cf253292ff341a3a https://www.encodeproject.org/files/ENCFF122DRL/@@download/ENCFF122DRL.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF326SGF bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUL, ENCFF643CGH 1132486383 ENCODE Processing Pipeline cbdceb41f91a4161281c8416c23356ff https://www.encodeproject.org/files/ENCFF326SGF/@@download/ENCFF326SGF.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF420BSH bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XUK, ENCFF643CGH 1054977767 ENCODE Processing Pipeline 655c1782d9e80b8066df9847e5508d51 https://www.encodeproject.org/files/ENCFF420BSH/@@download/ENCFF420BSH.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF396ZGK bigWig signal p-value ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF326SGF 581621525 ENCODE Processing Pipeline bfc14d29661f926570a5ead7c229d601 https://www.encodeproject.org/files/ENCFF396ZGK/@@download/ENCFF396ZGK.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF201BMZ bigWig signal p-value ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF420BSH 612913534 ENCODE Processing Pipeline 0f8cb14e4fe11bdd39227b9d9d412fda https://www.encodeproject.org/files/ENCFF201BMZ/@@download/ENCFF201BMZ.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF490VXP bigWig signal p-value ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF326SGF, ENCFF420BSH 734099844 ENCODE Processing Pipeline ee92f3461ac57a5aa941a14949fafa76 https://www.encodeproject.org/files/ENCFF490VXP/@@download/ENCFF490VXP.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF154JIA bigWig fold change over control ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF420BSH 551233726 ENCODE Processing Pipeline 1a5733a536d81c373b8ac94faaa8250d https://www.encodeproject.org/files/ENCFF154JIA/@@download/ENCFF154JIA.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF714EGZ bigWig fold change over control ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF326SGF 556956924 ENCODE Processing Pipeline 731e5ce5ca707b4b255292d9b45351ba https://www.encodeproject.org/files/ENCFF714EGZ/@@download/ENCFF714EGZ.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF748HVA bigWig fold change over control ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF326SGF, ENCFF420BSH 895075986 ENCODE Processing Pipeline b9583d47ce1e57b0acd76509591583ee https://www.encodeproject.org/files/ENCFF748HVA/@@download/ENCFF748HVA.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF632THJ bed narrowPeak conservative idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359VOP, ENCFF419RSJ, ENCFF835GLG, ENCFF883KWQ 1187355 ENCODE Processing Pipeline 742fe315f5d9dcc226b6aaf3e1769896 https://www.encodeproject.org/files/ENCFF632THJ/@@download/ENCFF632THJ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF359VOP bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF420BSH 5527952 ENCODE Processing Pipeline 831a89d382c473ee53e87eb6820a3066 https://www.encodeproject.org/files/ENCFF359VOP/@@download/ENCFF359VOP.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF179BIY bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF883KWQ 11929022 ENCODE Processing Pipeline 042d64c8d0ebff52eb008eed83f5e541 https://www.encodeproject.org/files/ENCFF179BIY/@@download/ENCFF179BIY.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF565SFG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF632THJ 2001417 ENCODE Processing Pipeline 510561b0647c9aebd711ee8a0077177b https://www.encodeproject.org/files/ENCFF565SFG/@@download/ENCFF565SFG.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF883KWQ bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF326SGF 5503921 ENCODE Processing Pipeline 17194608e4c159ecdf80e5dfe4a7c877 https://www.encodeproject.org/files/ENCFF883KWQ/@@download/ENCFF883KWQ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF835GLG bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF326SGF, ENCFF420BSH 6461297 ENCODE Processing Pipeline f74e78a78175c8e5c06215601cc7351a https://www.encodeproject.org/files/ENCFF835GLG/@@download/ENCFF835GLG.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF900PRA bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF359VOP 12038805 ENCODE Processing Pipeline 343479b0e6cf553fdcff736b0132902e https://www.encodeproject.org/files/ENCFF900PRA/@@download/ENCFF900PRA.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF823CRN bigBed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF835GLG 12342286 ENCODE Processing Pipeline 18e64897f2239b0ec19dd282c567856d https://www.encodeproject.org/files/ENCFF823CRN/@@download/ENCFF823CRN.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF171OJF bed narrowPeak optimal idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359VOP, ENCFF419RSJ, ENCFF835GLG, ENCFF883KWQ 1234680 ENCODE Processing Pipeline 790a1589cae7c02f845460f3e1b4bee8 https://www.encodeproject.org/files/ENCFF171OJF/@@download/ENCFF171OJF.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF642PSN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF171OJF 2063612 ENCODE Processing Pipeline 7d6168ebbe6e3189df61a8e103292ee2 https://www.encodeproject.org/files/ENCFF642PSN/@@download/ENCFF642PSN.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF732OLJ bam unfiltered alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF802HNQ, ENCFF807MUK, ENCFF954DSX 6811175134 ENCODE Processing Pipeline 7f9f8f6c169782e09d48cdd7bcd6d093 https://www.encodeproject.org/files/ENCFF732OLJ/@@download/ENCFF732OLJ.bam hg19 released antibody characterized with exemption ENCFF002QIZ bam unfiltered alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF807MUK, ENCFF827PIQ, ENCFF949SIP 7548479647 ENCODE Processing Pipeline a9ca6a008416ad95316a4e11f69e0b2f https://www.encodeproject.org/files/ENCFF002QIZ/@@download/ENCFF002QIZ.bam hg19 released antibody characterized with exemption ENCFF827PIQ fastq reads ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 1 100 paired-ended 1 ENCFF949SIP 3429144499 Michael Snyder, Stanford 31357aa2689e9772e44fc9f6da647d52 SRA:SRR5111710 https://www.encodeproject.org/files/ENCFF827PIQ/@@download/ENCFF827PIQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFB/ released antibody characterized with exemption ENCFF949SIP fastq reads ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 1 100 paired-ended 2 ENCFF827PIQ 3528621116 Michael Snyder, Stanford 0cce00f9bf441e9d140cb59dc8a70c0b SRA:SRR5111710 https://www.encodeproject.org/files/ENCFF949SIP/@@download/ENCFF949SIP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EEZ/ released antibody characterized with exemption ENCFF802HNQ fastq reads ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 1 100 paired-ended 1 ENCFF954DSX 3088084734 Michael Snyder, Stanford 4cf50c1bd517481a339cb923570b1079 SRA:SRR5111709 https://www.encodeproject.org/files/ENCFF802HNQ/@@download/ENCFF802HNQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFC/ released antibody characterized with exemption ENCFF954DSX fastq reads ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 1 100 paired-ended 2 ENCFF802HNQ 3165650146 Michael Snyder, Stanford 01ee30457968da511dc7914ba521971f SRA:SRR5111709 https://www.encodeproject.org/files/ENCFF954DSX/@@download/ENCFF954DSX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFE/ released antibody characterized with exemption ENCFF406DSV bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF807MUK, ENCFF827PIQ, ENCFF949SIP 6383706780 ENCODE Processing Pipeline 8c57ab99572aa6608888130533c4c8bf https://www.encodeproject.org/files/ENCFF406DSV/@@download/ENCFF406DSV.bam hg19 released antibody characterized with exemption ENCFF560SBN bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF802HNQ, ENCFF807MUK, ENCFF954DSX 5616360705 ENCODE Processing Pipeline 7383a46b20d79ca58b0b4bb939a68f4e https://www.encodeproject.org/files/ENCFF560SBN/@@download/ENCFF560SBN.bam hg19 released antibody characterized with exemption ENCFF271NDN bigWig signal p-value ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF406DSV, ENCFF449NNE, ENCFF999EQI 1833487696 ENCODE Processing Pipeline 0b2bb3c53bb2c0f46e1d93f97420e635 https://www.encodeproject.org/files/ENCFF271NDN/@@download/ENCFF271NDN.bigWig hg19 released antibody characterized with exemption ENCFF360CNY bigWig fold change over control ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF406DSV, ENCFF449NNE, ENCFF999EQI 1812161009 ENCODE Processing Pipeline 6dbabbb6f47bac85258bc630c4837728 https://www.encodeproject.org/files/ENCFF360CNY/@@download/ENCFF360CNY.bigWig hg19 released antibody characterized with exemption ENCFF186RIK bam unfiltered alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF643CGH, ENCFF802HNQ, ENCFF954DSX 6824169096 ENCODE Processing Pipeline 429eeeccdba116a5b510c53c48256a3d https://www.encodeproject.org/files/ENCFF186RIK/@@download/ENCFF186RIK.bam GRCh38 released antibody characterized with exemption ENCFF534NHJ bam unfiltered alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF643CGH, ENCFF827PIQ, ENCFF949SIP 7562732328 ENCODE Processing Pipeline 8e2de73b994f0811a9db7a36d22e1d4e https://www.encodeproject.org/files/ENCFF534NHJ/@@download/ENCFF534NHJ.bam GRCh38 released antibody characterized with exemption ENCFF623YND bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF643CGH, ENCFF802HNQ, ENCFF954DSX 5631814140 ENCODE Processing Pipeline 41439d9507359c2f32611348377818a0 https://www.encodeproject.org/files/ENCFF623YND/@@download/ENCFF623YND.bam GRCh38 released antibody characterized with exemption ENCFF247NIG bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF643CGH, ENCFF827PIQ, ENCFF949SIP 6400140295 ENCODE Processing Pipeline 183625b1d8a957619a46a2c28c89c23f https://www.encodeproject.org/files/ENCFF247NIG/@@download/ENCFF247NIG.bam GRCh38 released antibody characterized with exemption ENCFF304XGW bigWig signal p-value ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF190EPQ, ENCFF623YND 1348221256 ENCODE Processing Pipeline 976236158e3a8ad3caefe62e5eeaf849 https://www.encodeproject.org/files/ENCFF304XGW/@@download/ENCFF304XGW.bigWig GRCh38 released antibody characterized with exemption ENCFF524RAI bigWig signal p-value ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF190EPQ, ENCFF247NIG, ENCFF950AXC 1617013100 ENCODE Processing Pipeline 7933385caeab6fd3ef4b212fd6182634 https://www.encodeproject.org/files/ENCFF524RAI/@@download/ENCFF524RAI.bigWig GRCh38 released antibody characterized with exemption ENCFF258HSS bigWig signal p-value ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF247NIG, ENCFF623YND, ENCFF950AXC 2050626132 ENCODE Processing Pipeline bfed35e4c5fb2314e5e61ca5d229df28 https://www.encodeproject.org/files/ENCFF258HSS/@@download/ENCFF258HSS.bigWig GRCh38 released antibody characterized with exemption ENCFF686OOA bigWig fold change over control ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF190EPQ, ENCFF623YND 1318070241 ENCODE Processing Pipeline 23e48554d4a610d8cffe0ec5460bd528 https://www.encodeproject.org/files/ENCFF686OOA/@@download/ENCFF686OOA.bigWig GRCh38 released antibody characterized with exemption ENCFF904MGR bigWig fold change over control ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF190EPQ, ENCFF247NIG, ENCFF950AXC 1819524343 ENCODE Processing Pipeline fcdd579342975c259fb8fed26d993814 https://www.encodeproject.org/files/ENCFF904MGR/@@download/ENCFF904MGR.bigWig GRCh38 released antibody characterized with exemption ENCFF505XLJ bigWig fold change over control ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF247NIG, ENCFF623YND, ENCFF950AXC 2341380351 ENCODE Processing Pipeline dff2770c2c248ed0cdfaa225e60b6510 https://www.encodeproject.org/files/ENCFF505XLJ/@@download/ENCFF505XLJ.bigWig GRCh38 released antibody characterized with exemption ENCFF611EHT bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF190EPQ, ENCFF247NIG, ENCFF950AXC 6585949 ENCODE Processing Pipeline 4345b8b4f4dd6ab0ee1162cffc6ec90f https://www.encodeproject.org/files/ENCFF611EHT/@@download/ENCFF611EHT.bed.gz GRCh38 released antibody characterized with exemption ENCFF686GNW bigBed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF611EHT 11483099 ENCODE Processing Pipeline 7e485637f2b0f1afabb159bc6f1d4de0 https://www.encodeproject.org/files/ENCFF686GNW/@@download/ENCFF686GNW.bigBed GRCh38 released antibody characterized with exemption ENCFF504BHB bigBed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF931AZO 11448689 ENCODE Processing Pipeline 8e05838bc66f2c7fc6ce0de1085d450e https://www.encodeproject.org/files/ENCFF504BHB/@@download/ENCFF504BHB.bigBed GRCh38 released antibody characterized with exemption ENCFF931AZO bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF190EPQ, ENCFF623YND 6068367 ENCODE Processing Pipeline 60835fe0de25fe427dccc4e1a17d8371 https://www.encodeproject.org/files/ENCFF931AZO/@@download/ENCFF931AZO.bed.gz GRCh38 released antibody characterized with exemption ENCFF773LRG bigBed narrowPeak conservative idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF916LHV 234513 ENCODE Processing Pipeline b7b67c3975f618cf79c42ca0181b0939 https://www.encodeproject.org/files/ENCFF773LRG/@@download/ENCFF773LRG.bigBed GRCh38 released antibody characterized with exemption ENCFF111GKS bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF190EPQ, ENCFF247NIG, ENCFF623YND, ENCFF950AXC 7187517 ENCODE Processing Pipeline 54ad22694519e359b53ff9ac44b461e3 https://www.encodeproject.org/files/ENCFF111GKS/@@download/ENCFF111GKS.bed.gz GRCh38 released antibody characterized with exemption ENCFF624WDI bed narrowPeak optimal idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF111GKS, ENCFF419RSJ, ENCFF611EHT, ENCFF931AZO 124452 ENCODE Processing Pipeline 82736767d8142f47b5ec45d2c99c1794 https://www.encodeproject.org/files/ENCFF624WDI/@@download/ENCFF624WDI.bed.gz GRCh38 released antibody characterized with exemption ENCFF144NKT bigBed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF111GKS 11527211 ENCODE Processing Pipeline 29e4402f14107d2c1d51ff7a9f916271 https://www.encodeproject.org/files/ENCFF144NKT/@@download/ENCFF144NKT.bigBed GRCh38 released antibody characterized with exemption ENCFF916LHV bed narrowPeak conservative idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF111GKS, ENCFF419RSJ, ENCFF611EHT, ENCFF931AZO 99844 ENCODE Processing Pipeline b5e55f51a5edf84310268717cd6a8a81 https://www.encodeproject.org/files/ENCFF916LHV/@@download/ENCFF916LHV.bed.gz GRCh38 released antibody characterized with exemption ENCFF649TOS bigBed narrowPeak optimal idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF624WDI 268905 ENCODE Processing Pipeline 503d63fb825a2cb1571581d974595675 https://www.encodeproject.org/files/ENCFF649TOS/@@download/ENCFF649TOS.bigBed GRCh38 released antibody characterized with exemption ENCFF215HIU bigBed narrowPeak conservative idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF791BSP 223344 ENCODE Processing Pipeline a0fb0d2042deae96289308e32997ae7a https://www.encodeproject.org/files/ENCFF215HIU/@@download/ENCFF215HIU.bigBed hg19 released antibody characterized with exemption ENCFF592THE bigWig fold change over control ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF449NNE, ENCFF560SBN 1320230884 ENCODE Processing Pipeline 480c45fb1b4eb659135853113b337fb2 https://www.encodeproject.org/files/ENCFF592THE/@@download/ENCFF592THE.bigWig hg19 released antibody characterized with exemption ENCFF741YYS bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF406DSV, ENCFF449NNE, ENCFF999EQI 6571487 ENCODE Processing Pipeline bc51d18284ca90cbb8fed1c2d29ee50a https://www.encodeproject.org/files/ENCFF741YYS/@@download/ENCFF741YYS.bed.gz hg19 released antibody characterized with exemption ENCFF120NMX bigWig signal p-value ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF449NNE, ENCFF560SBN 1211891182 ENCODE Processing Pipeline 9210db679c930195d3abe100907f4e20 https://www.encodeproject.org/files/ENCFF120NMX/@@download/ENCFF120NMX.bigWig hg19 released antibody characterized with exemption ENCFF586CXD bigWig fold change over control ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF406DSV, ENCFF449NNE, ENCFF560SBN, ENCFF999EQI 2330050477 ENCODE Processing Pipeline 1da73a6b327cee3bc5c85226c989322c https://www.encodeproject.org/files/ENCFF586CXD/@@download/ENCFF586CXD.bigWig hg19 released antibody characterized with exemption ENCFF959SQY bigBed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF741YYS 11458396 ENCODE Processing Pipeline 45c3c7d3e21263cedfc17879f3da06ed https://www.encodeproject.org/files/ENCFF959SQY/@@download/ENCFF959SQY.bigBed hg19 released antibody characterized with exemption ENCFF598VEK bed narrowPeak optimal idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF001TDO, ENCFF246GJS, ENCFF741YYS, ENCFF829CKQ 120849 ENCODE Processing Pipeline caa96ece080332e78a21cb467dfbe8d6 https://www.encodeproject.org/files/ENCFF598VEK/@@download/ENCFF598VEK.bed.gz hg19 released antibody characterized with exemption ENCFF692CXS bigWig signal p-value ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF406DSV, ENCFF449NNE, ENCFF560SBN, ENCFF999EQI 1906941454 ENCODE Processing Pipeline f38965a31288314bc76e36cb5d4aabd2 https://www.encodeproject.org/files/ENCFF692CXS/@@download/ENCFF692CXS.bigWig hg19 released antibody characterized with exemption ENCFF246GJS bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF449NNE, ENCFF560SBN 6036616 ENCODE Processing Pipeline 32f13d6823312b0678e67970d377f590 https://www.encodeproject.org/files/ENCFF246GJS/@@download/ENCFF246GJS.bed.gz hg19 released antibody characterized with exemption ENCFF791BSP bed narrowPeak conservative idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF001TDO, ENCFF246GJS, ENCFF741YYS, ENCFF829CKQ 94094 ENCODE Processing Pipeline bbdd61c64cdb88a7cc12567daad73717 https://www.encodeproject.org/files/ENCFF791BSP/@@download/ENCFF791BSP.bed.gz hg19 released antibody characterized with exemption ENCFF399QVP bigBed narrowPeak optimal idr thresholded peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF598VEK 260578 ENCODE Processing Pipeline 5f292405b61c20f7c44ad71bd2f1562e https://www.encodeproject.org/files/ENCFF399QVP/@@download/ENCFF399QVP.bigBed hg19 released antibody characterized with exemption ENCFF829CKQ bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF406DSV, ENCFF449NNE, ENCFF560SBN, ENCFF999EQI 7171347 ENCODE Processing Pipeline 6aeca2eab355c4cb53424d29c311d135 https://www.encodeproject.org/files/ENCFF829CKQ/@@download/ENCFF829CKQ.bed.gz hg19 released antibody characterized with exemption ENCFF203OJV bigBed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF246GJS 11444863 ENCODE Processing Pipeline 885b5cf0dcd4036737330bad39cf1a83 https://www.encodeproject.org/files/ENCFF203OJV/@@download/ENCFF203OJV.bigBed hg19 released antibody characterized with exemption ENCFF069ZMV bigBed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1, 2 ENCFF829CKQ 11500194 ENCODE Processing Pipeline 9d55463635a476c0c73834a10afe86a7 https://www.encodeproject.org/files/ENCFF069ZMV/@@download/ENCFF069ZMV.bigBed hg19 released antibody characterized with exemption ENCFF001HKB bam alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKO 783961969 John Stamatoyannopoulos, UW 2b8c25154e5295238966be93946d1c93 https://www.encodeproject.org/files/ENCFF001HKB/@@download/ENCFF001HKB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HKC bigBed broadPeak hotspots ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPZ 3164435 John Stamatoyannopoulos, UW e8b12704a44bad2957518b6e57117e02 https://www.encodeproject.org/files/ENCFF001HKC/@@download/ENCFF001HKC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HKD bigBed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQA 1149438 John Stamatoyannopoulos, UW f7378fcc6165fec861a9452e22e2ffc4 https://www.encodeproject.org/files/ENCFF001HKD/@@download/ENCFF001HKD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HKE bigWig raw signal ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 154102510 John Stamatoyannopoulos, UW d3736518ffae381a6b6c2ce49cc0e340 https://www.encodeproject.org/files/ENCFF001HKE/@@download/ENCFF001HKE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001HKO fastq reads ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 874392973 John Stamatoyannopoulos, UW 3ecd9fffcdb74ea28fee86e8f0f39ec8 https://www.encodeproject.org/files/ENCFF001HKO/@@download/ENCFF001HKO.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HKT/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001XPZ bed broadPeak hotspots ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 2228594 John Stamatoyannopoulos, UW 14f89f172c559b30b774a909fbbdc924 https://www.encodeproject.org/files/ENCFF001XPZ/@@download/ENCFF001XPZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001XQA bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 822894 John Stamatoyannopoulos, UW f9c7d07990d97bbd9a0061243dcbd239 https://www.encodeproject.org/files/ENCFF001XQA/@@download/ENCFF001XQA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF002DCQ bed narrowPeak optimal idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 807242 ENCODE Consortium Analysis Working Group fde7e0859c20ba18cda848aa9ceffad1 https://www.encodeproject.org/files/ENCFF002DCQ/@@download/ENCFF002DCQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF442KPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF002DCQ 1444908 ENCODE Consortium c6bf84b732d6456b23c592d79e49ca4d https://www.encodeproject.org/files/ENCFF442KPL/@@download/ENCFF442KPL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF155GGY bam unfiltered alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HKO, ENCFF807MUK 989904710 ENCODE Processing Pipeline 214f0d5d9738748ce47678921421c0a8 https://www.encodeproject.org/files/ENCFF155GGY/@@download/ENCFF155GGY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF419FEJ bam alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HKO, ENCFF807MUK 637891246 ENCODE Processing Pipeline 0c3efd5c3f13e37d484d4a2e740eaa4d https://www.encodeproject.org/files/ENCFF419FEJ/@@download/ENCFF419FEJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF878MKV bigWig signal p-value ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419FEJ, ENCFF661ZEZ 491475214 ENCODE Processing Pipeline 5e3854976c2bb60bb91b11f7ce347476 https://www.encodeproject.org/files/ENCFF878MKV/@@download/ENCFF878MKV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF413XIV bigWig fold change over control ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419FEJ, ENCFF661ZEZ 308514783 ENCODE Processing Pipeline 3a4aa216298e5da32cc205dd2b9d27f6 https://www.encodeproject.org/files/ENCFF413XIV/@@download/ENCFF413XIV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF344UBE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF861NLK 679590 ENCODE Processing Pipeline 756c19bfa7d7c4fd6559b250993d837b https://www.encodeproject.org/files/ENCFF344UBE/@@download/ENCFF344UBE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF946BDK bigBed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF861NLK 10716547 ENCODE Processing Pipeline c5f127ea14a2d82658b45621058146f2 https://www.encodeproject.org/files/ENCFF946BDK/@@download/ENCFF946BDK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF485KSO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF344UBE 1246862 ENCODE Processing Pipeline 3134bebb064d8a3b41f8e45f6609620c https://www.encodeproject.org/files/ENCFF485KSO/@@download/ENCFF485KSO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF708KXW bam alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HKO, ENCFF643CGH 637717931 ENCODE Processing Pipeline 2e83999c9cc8ad33478fd0c0886f44d0 https://www.encodeproject.org/files/ENCFF708KXW/@@download/ENCFF708KXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF705NLC bam unfiltered alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HKO, ENCFF643CGH 993468061 ENCODE Processing Pipeline 087bdb93b5f543f0fc7832f8dd2016d1 https://www.encodeproject.org/files/ENCFF705NLC/@@download/ENCFF705NLC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF079UMY bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF708KXW, ENCFF880XKJ 4280668 ENCODE Processing Pipeline 35148d58f533a44ca15b7ae564c2a900 https://www.encodeproject.org/files/ENCFF079UMY/@@download/ENCFF079UMY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF778LHB bigBed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF079UMY 10766584 ENCODE Processing Pipeline ece30df33e11e58d15bbaba188ac9db9 https://www.encodeproject.org/files/ENCFF778LHB/@@download/ENCFF778LHB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF701IHV bigWig signal p-value ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF708KXW, ENCFF880XKJ 404237717 ENCODE Processing Pipeline c02ea164394b57f51f940206daa90ab5 https://www.encodeproject.org/files/ENCFF701IHV/@@download/ENCFF701IHV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF921GHG bigWig fold change over control ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF708KXW, ENCFF880XKJ 309589153 ENCODE Processing Pipeline ee3bbb23f1290312d8cb5e11f86ac039 https://www.encodeproject.org/files/ENCFF921GHG/@@download/ENCFF921GHG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF363HXH bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF243AGG 1268870 ENCODE Processing Pipeline 39c6081e9a1d488134a844e12327a2a4 https://www.encodeproject.org/files/ENCFF363HXH/@@download/ENCFF363HXH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF243AGG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF079UMY, ENCFF419RSJ 690249 ENCODE Processing Pipeline 659b12437d79a0d5a6dbba62cac2915b https://www.encodeproject.org/files/ENCFF243AGG/@@download/ENCFF243AGG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF861NLK bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419FEJ, ENCFF661ZEZ 4247467 ENCODE Processing Pipeline f2002e90a4db1e594fac6262f148c6e4 https://www.encodeproject.org/files/ENCFF861NLK/@@download/ENCFF861NLK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000QRG bam alignments ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QRV 1419017242 Richard Myers, HAIB 53e9cd4b1e3ff5e2eecd70ab2d0aba7f https://www.encodeproject.org/files/ENCFF000QRG/@@download/ENCFF000QRG.bam hg19 released biological replicates with identical biosample ENCFF000QRI bam alignments ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QRU 1446730666 Richard Myers, HAIB 27ab6b9a1e088707ea54cfb010f7220a https://www.encodeproject.org/files/ENCFF000QRI/@@download/ENCFF000QRI.bam hg19 released biological replicates with identical biosample ENCFF000QRJ bigBed broadPeak peaks ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNV 170363 Richard Myers, HAIB df3a0f8702e611824cd1adfaa5eb748d https://www.encodeproject.org/files/ENCFF000QRJ/@@download/ENCFF000QRJ.bigBed hg19 released biological replicates with identical biosample ENCFF000QRK bigBed broadPeak peaks ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNW 141156 Richard Myers, HAIB 928b6d969d319d35ddf113858907a8dd https://www.encodeproject.org/files/ENCFF000QRK/@@download/ENCFF000QRK.bigBed hg19 released biological replicates with identical biosample ENCFF000QRM bigWig raw signal ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 91737362 Richard Myers, HAIB 87c29edf30568373f20cffd6e99efdcf https://www.encodeproject.org/files/ENCFF000QRM/@@download/ENCFF000QRM.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QRN bigWig raw signal ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 144429940 Richard Myers, HAIB ba33127164e4008d074559ec687a7181 https://www.encodeproject.org/files/ENCFF000QRN/@@download/ENCFF000QRN.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QRU fastq reads ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1493792184 Richard Myers, HAIB a45dea585aabcc723636331ce8bc4a30 https://www.encodeproject.org/files/ENCFF000QRU/@@download/ENCFF000QRU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQJ/ released biological replicates with identical biosample ENCFF000QRV fastq reads ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1556419291 Richard Myers, HAIB 335b41da930f21bc5bcc048d5eb5f0a6 https://www.encodeproject.org/files/ENCFF000QRV/@@download/ENCFF000QRV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQG/ released biological replicates with identical biosample ENCFF001UNV bed broadPeak peaks ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 1 61301 Richard Myers, HAIB 394921c90cf0b7936e559784596a8016 https://www.encodeproject.org/files/ENCFF001UNV/@@download/ENCFF001UNV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNW bed broadPeak peaks ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 1 55538 Richard Myers, HAIB 4a18a33816df43c736b0141b3302b2f9 https://www.encodeproject.org/files/ENCFF001UNW/@@download/ENCFF001UNW.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000ZEF bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZEX 305353587 Peggy Farnham, USC f5fdb8889067ede39d7016c89c34aeed https://www.encodeproject.org/files/ENCFF000ZEF/@@download/ENCFF000ZEF.bam hg19 archived biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000ZEG bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZEY 305900513 Peggy Farnham, USC e836335b1c73bc73bdb58a6a2e942d91 https://www.encodeproject.org/files/ENCFF000ZEG/@@download/ENCFF000ZEG.bam hg19 archived biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000ZEH bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPM 171356 Peggy Farnham, USC 670554216744ef929dac781f9d033791 https://www.encodeproject.org/files/ENCFF000ZEH/@@download/ENCFF000ZEH.bigBed hg19 archived biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000ZEI bigWig signal ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 302964234 Peggy Farnham, USC 6fe8d0098bb3a359b5fc8ea9c2f5c8b5 https://www.encodeproject.org/files/ENCFF000ZEI/@@download/ENCFF000ZEI.bigWig hg19 archived missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000ZEX fastq reads ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 238050449 Peggy Farnham, USC 91e86905c665958ac087696d8ec70e5f https://www.encodeproject.org/files/ENCFF000ZEX/@@download/ENCFF000ZEX.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000ZEY fastq reads ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 238439238 Peggy Farnham, USC 1a4539a3dba95c9d3f711050c241a5ef https://www.encodeproject.org/files/ENCFF000ZEY/@@download/ENCFF000ZEY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF001VPM bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 47241 Peggy Farnham, USC de9000f06a3f75322cd7456ef370fb0e https://www.encodeproject.org/files/ENCFF001VPM/@@download/ENCFF001VPM.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF002CYS bed narrowPeak optimal idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 63718 ENCODE Consortium Analysis Working Group 78068fe6a83e3950baf4430d38749f04 https://www.encodeproject.org/files/ENCFF002CYS/@@download/ENCFF002CYS.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF094KGN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYS 182942 ENCODE Consortium d651e7171592db1ae2539ebadb2be28f https://www.encodeproject.org/files/ENCFF094KGN/@@download/ENCFF094KGN.bigBed hg19 archived biological replicates with identical biosample insufficient read length extremely low read depth ENCFF594KMD bam unfiltered alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZEY, ENCFF643CGH 307210652 ENCODE Processing Pipeline 53d75d650c69eef8a61bef7a68b53517 https://www.encodeproject.org/files/ENCFF594KMD/@@download/ENCFF594KMD.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF728UEJ bam unfiltered alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZEX, ENCFF643CGH 306773345 ENCODE Processing Pipeline 58c9500c6fba41d9d33aa9db60149256 https://www.encodeproject.org/files/ENCFF728UEJ/@@download/ENCFF728UEJ.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF891GFG bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZEY, ENCFF643CGH 151136506 ENCODE Processing Pipeline 13c7b475820f057f029d42e5126c1d63 https://www.encodeproject.org/files/ENCFF891GFG/@@download/ENCFF891GFG.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF550BLP bigWig signal p-value ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094FZQ, ENCFF355SGP, ENCFF891GFG 409251695 ENCODE Processing Pipeline 18c080e124813d016b87bbc973192ee9 https://www.encodeproject.org/files/ENCFF550BLP/@@download/ENCFF550BLP.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF888KVA bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094FZQ, ENCFF355SGP, ENCFF891GFG 5735739 ENCODE Processing Pipeline 227a36a7d0329d1261b53c42a94f920d https://www.encodeproject.org/files/ENCFF888KVA/@@download/ENCFF888KVA.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF094FZQ bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZEX, ENCFF643CGH 146679334 ENCODE Processing Pipeline 25fda2567233b7d71b76970d7bd83bf3 https://www.encodeproject.org/files/ENCFF094FZQ/@@download/ENCFF094FZQ.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF592UVR bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF094FZQ, ENCFF355SGP 3374152 ENCODE Processing Pipeline 6385ee0e480656089d579e10fb5b6418 https://www.encodeproject.org/files/ENCFF592UVR/@@download/ENCFF592UVR.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF609MNU bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF609SJE 9774031 ENCODE Processing Pipeline 5ac0454695230fbbd179d75f6bf47ce3 https://www.encodeproject.org/files/ENCFF609MNU/@@download/ENCFF609MNU.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF168INA bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF888KVA 12403755 ENCODE Processing Pipeline 29936faffdeab3961283378f2fd613a4 https://www.encodeproject.org/files/ENCFF168INA/@@download/ENCFF168INA.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF322VHC bigWig fold change over control ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094FZQ, ENCFF355SGP, ENCFF891GFG 230925044 ENCODE Processing Pipeline f5d0d25ad0fa333feafacd4c89fa49f4 https://www.encodeproject.org/files/ENCFF322VHC/@@download/ENCFF322VHC.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF609SJE bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF891GFG 3963342 ENCODE Processing Pipeline e4ccab66aaa93ca0c41248d590eba94f https://www.encodeproject.org/files/ENCFF609SJE/@@download/ENCFF609SJE.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF125VKL bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF592UVR 8546343 ENCODE Processing Pipeline 54b71c6a6d3de0ae88b5375a7467c4a2 https://www.encodeproject.org/files/ENCFF125VKL/@@download/ENCFF125VKL.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF889OBU bigWig signal p-value ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF094FZQ, ENCFF355SGP 353436007 ENCODE Processing Pipeline ce65413fca80c0bbb33bf06168fe07fa https://www.encodeproject.org/files/ENCFF889OBU/@@download/ENCFF889OBU.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF281VWO bigWig fold change over control ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF891GFG 138056242 ENCODE Processing Pipeline e178cfcc85618d7e57e2c1bb052c7baa https://www.encodeproject.org/files/ENCFF281VWO/@@download/ENCFF281VWO.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF929SEP bigWig signal p-value ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF891GFG 336408605 ENCODE Processing Pipeline e84a7766cde2f29eb778045e921ef3be https://www.encodeproject.org/files/ENCFF929SEP/@@download/ENCFF929SEP.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF470UCI bigWig fold change over control ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF094FZQ, ENCFF355SGP 133727058 ENCODE Processing Pipeline bc6de96b011ab3f891b935fa60a2fa4b https://www.encodeproject.org/files/ENCFF470UCI/@@download/ENCFF470UCI.bigWig GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF607PKH bed narrowPeak conservative idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF592UVR, ENCFF609SJE, ENCFF888KVA 65842 ENCODE Processing Pipeline 87ab138464b1f3a9d4db7651896f8565 https://www.encodeproject.org/files/ENCFF607PKH/@@download/ENCFF607PKH.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF579ETM bed narrowPeak optimal idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF592UVR, ENCFF609SJE, ENCFF888KVA 67789 ENCODE Processing Pipeline b6c38bae2ef61a659aadf55b977a891a https://www.encodeproject.org/files/ENCFF579ETM/@@download/ENCFF579ETM.bed.gz GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF583LTY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF607PKH 188474 ENCODE Processing Pipeline 23bf3b1bc97f7b799343b675b7df102e https://www.encodeproject.org/files/ENCFF583LTY/@@download/ENCFF583LTY.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF115SMX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF579ETM 191274 ENCODE Processing Pipeline e4dc5fa0d898124cd1528768d4501d54 https://www.encodeproject.org/files/ENCFF115SMX/@@download/ENCFF115SMX.bigBed GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF362BFL bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZEX, ENCFF807MUK 146972851 ENCODE Processing Pipeline 987ecc629057affae433a925a2c99bb9 https://www.encodeproject.org/files/ENCFF362BFL/@@download/ENCFF362BFL.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF981FLC bigWig signal p-value ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF362BFL 335854173 ENCODE Processing Pipeline 54f9ebe5790cdc1687b3acd9c4ac7a9e https://www.encodeproject.org/files/ENCFF981FLC/@@download/ENCFF981FLC.bigWig hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF834RLQ bigWig signal p-value ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF221GJM, ENCFF362BFL 390120749 ENCODE Processing Pipeline 1826b2eea791d777dff5faa0e34677d6 https://www.encodeproject.org/files/ENCFF834RLQ/@@download/ENCFF834RLQ.bigWig hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF051FKL bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF362BFL 3582959 ENCODE Processing Pipeline d37e6204205236600c1cd7fc27b279c0 https://www.encodeproject.org/files/ENCFF051FKL/@@download/ENCFF051FKL.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF221GJM bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZEY, ENCFF807MUK 151423686 ENCODE Processing Pipeline f36189516a35d2767a251bb3905cb27b https://www.encodeproject.org/files/ENCFF221GJM/@@download/ENCFF221GJM.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF318FFG bigWig fold change over control ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF221GJM, ENCFF362BFL 229392975 ENCODE Processing Pipeline a5e5f2a6b2ab105cf056dccef87535ff https://www.encodeproject.org/files/ENCFF318FFG/@@download/ENCFF318FFG.bigWig hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF961JKM bam unfiltered alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZEY, ENCFF807MUK 306717959 ENCODE Processing Pipeline c3845b38b5f02361184168f5d25724b4 https://www.encodeproject.org/files/ENCFF961JKM/@@download/ENCFF961JKM.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF819ANL bam unfiltered alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZEX, ENCFF807MUK 306187671 ENCODE Processing Pipeline 59bb2bd7c9c833f8eed4b1ac678c2c3b https://www.encodeproject.org/files/ENCFF819ANL/@@download/ENCFF819ANL.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF893NEX bigWig signal p-value ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF221GJM 340119608 ENCODE Processing Pipeline 7b8e1d6a7f86cbb43de1e88a828796f5 https://www.encodeproject.org/files/ENCFF893NEX/@@download/ENCFF893NEX.bigWig hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF534CIT bigWig fold change over control ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF362BFL 132374282 ENCODE Processing Pipeline 9787ddf17d57226b3315c3e3c80475ec https://www.encodeproject.org/files/ENCFF534CIT/@@download/ENCFF534CIT.bigWig hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF597SRL bigWig fold change over control ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF221GJM 136760340 ENCODE Processing Pipeline bb562e13d50ea90a03b77fa2a9f3f3b5 https://www.encodeproject.org/files/ENCFF597SRL/@@download/ENCFF597SRL.bigWig hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF100FXA bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF221GJM 4035379 ENCODE Processing Pipeline c3ae106011943b7122e307a0f977bc5b https://www.encodeproject.org/files/ENCFF100FXA/@@download/ENCFF100FXA.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF537UES bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF221GJM, ENCFF362BFL 5931174 ENCODE Processing Pipeline dabddf6f455929722bd64e2fc6242da2 https://www.encodeproject.org/files/ENCFF537UES/@@download/ENCFF537UES.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF830NTS bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051FKL 8770201 ENCODE Processing Pipeline 4a094c94dd6163241e679087e7aff7f5 https://www.encodeproject.org/files/ENCFF830NTS/@@download/ENCFF830NTS.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF696HVU bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF537UES 12581668 ENCODE Processing Pipeline aa96bf5fede5ad13f6b170ad973204f3 https://www.encodeproject.org/files/ENCFF696HVU/@@download/ENCFF696HVU.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF891MVM bed narrowPeak optimal idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF051FKL, ENCFF100FXA, ENCFF537UES 67975 ENCODE Processing Pipeline 6f1947b757a7ffc01cf96e02420dce62 https://www.encodeproject.org/files/ENCFF891MVM/@@download/ENCFF891MVM.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF213OFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF891MVM 190171 ENCODE Processing Pipeline 5295f582d553f9bd7abd2e9f7edaf0ec https://www.encodeproject.org/files/ENCFF213OFN/@@download/ENCFF213OFN.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF201NNF bigBed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF100FXA 9896056 ENCODE Processing Pipeline 4c09d4c8b32a716456ffa96ea107dbc0 https://www.encodeproject.org/files/ENCFF201NNF/@@download/ENCFF201NNF.bigBed hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF197FBD bam unfiltered alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 50 ENCFF142GQB, ENCFF807MUK 1334123947 ENCODE Processing Pipeline 196c0bd3aa2e8703868b836b5a5655df https://www.encodeproject.org/files/ENCFF197FBD/@@download/ENCFF197FBD.bam hg19 released low read depth, antibody characterized with exemption ENCFF160TKS bam unfiltered alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 50 ENCFF796BOA, ENCFF807MUK 1450073814 ENCODE Processing Pipeline d65f293c097b48b81f462336cde6be49 https://www.encodeproject.org/files/ENCFF160TKS/@@download/ENCFF160TKS.bam hg19 released low read depth, antibody characterized with exemption ENCFF361PJU bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF023YMB, ENCFF272HDX 6155141 ENCODE Processing Pipeline 1ca260b3cf83a5a8f400fcef7aed5994 https://www.encodeproject.org/files/ENCFF361PJU/@@download/ENCFF361PJU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF643XPE bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF272HDX, ENCFF487NQY 6874904 ENCODE Processing Pipeline b1cffbbf30f9768d1626b9eb63505d1d https://www.encodeproject.org/files/ENCFF643XPE/@@download/ENCFF643XPE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF305WVO bigBed narrowPeak optimal idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF583DZD 472297 ENCODE Processing Pipeline 82b85e933a0eadd3274a49b0f402947c https://www.encodeproject.org/files/ENCFF305WVO/@@download/ENCFF305WVO.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF004MPD bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF092ACZ, ENCFF487NQY 5580912 ENCODE Processing Pipeline 4fae6b6b7a4a86df07b748b45c5ba3e8 https://www.encodeproject.org/files/ENCFF004MPD/@@download/ENCFF004MPD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF513EWQ bigBed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF004MPD 13177648 ENCODE Processing Pipeline 6e51cd9316d1a1af7f07839a52ae9b9b https://www.encodeproject.org/files/ENCFF513EWQ/@@download/ENCFF513EWQ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF002VRB bigBed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF361PJU 13077785 ENCODE Processing Pipeline a0480c73c3afdde6282886681fed71c0 https://www.encodeproject.org/files/ENCFF002VRB/@@download/ENCFF002VRB.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF341AHR bigBed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF643XPE 13159061 ENCODE Processing Pipeline 511b48f324f8c623984bf30231b3c7cb https://www.encodeproject.org/files/ENCFF341AHR/@@download/ENCFF341AHR.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF795LBM bed narrowPeak conservative idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF001TDO, ENCFF004MPD, ENCFF361PJU, ENCFF643XPE 194174 ENCODE Processing Pipeline 66c01b5058f9c814b2fe9fffa9c308c2 https://www.encodeproject.org/files/ENCFF795LBM/@@download/ENCFF795LBM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF500GQE bigBed narrowPeak conservative idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF795LBM 388407 ENCODE Processing Pipeline 08aa151bce1735c43b343e8bb170b98f https://www.encodeproject.org/files/ENCFF500GQE/@@download/ENCFF500GQE.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF583DZD bed narrowPeak optimal idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF001TDO, ENCFF004MPD, ENCFF361PJU, ENCFF643XPE 256420 ENCODE Processing Pipeline 6d801259152b94d89a2e782b987fca27 https://www.encodeproject.org/files/ENCFF583DZD/@@download/ENCFF583DZD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF191QTF bigWig fold change over control ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF092ACZ, ENCFF487NQY 459714069 ENCODE Processing Pipeline e9cf953e87d1aa467957e25900af5b67 https://www.encodeproject.org/files/ENCFF191QTF/@@download/ENCFF191QTF.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF692BSB bigWig signal p-value ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF092ACZ, ENCFF487NQY 541647944 ENCODE Processing Pipeline d79db6fc7492944fbcac115810349264 https://www.encodeproject.org/files/ENCFF692BSB/@@download/ENCFF692BSB.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF796BOA fastq reads ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 1 50 single-ended 1358844703 Richard Myers, HAIB 20b8da5c2488aeeff91332bbe228fed6 SRA:SRR5339221 https://www.encodeproject.org/files/ENCFF796BOA/@@download/ENCFF796BOA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGC/ released low read depth, antibody characterized with exemption ENCFF142GQB fastq reads ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 1 50 single-ended 1258325290 Richard Myers, HAIB 4a57c97f290a14ace0a4e2c368cd6385 SRA:SRR5339222 https://www.encodeproject.org/files/ENCFF142GQB/@@download/ENCFF142GQB.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGB/ released low read depth, antibody characterized with exemption ENCFF487NQY bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 50 ENCFF142GQB, ENCFF807MUK 1009953701 ENCODE Processing Pipeline 2509ad9514586aad2df8f0f7be4a0ff7 https://www.encodeproject.org/files/ENCFF487NQY/@@download/ENCFF487NQY.bam hg19 released low read depth, antibody characterized with exemption ENCFF272HDX bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 50 ENCFF796BOA, ENCFF807MUK 1111429634 ENCODE Processing Pipeline faa4f859dbcd90db520d89ca7ffd0a87 https://www.encodeproject.org/files/ENCFF272HDX/@@download/ENCFF272HDX.bam hg19 released low read depth, antibody characterized with exemption ENCFF869EZL bigWig signal p-value ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF272HDX, ENCFF487NQY 1206754032 ENCODE Processing Pipeline 9807cfa1cc4432696fcd8fb97cca631e https://www.encodeproject.org/files/ENCFF869EZL/@@download/ENCFF869EZL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF798CQJ bigWig signal p-value ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF023YMB, ENCFF272HDX 617209216 ENCODE Processing Pipeline e452d86bb369a41ec266848a9cc7ca15 https://www.encodeproject.org/files/ENCFF798CQJ/@@download/ENCFF798CQJ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF788TFX bigWig fold change over control ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF023YMB, ENCFF272HDX 503319645 ENCODE Processing Pipeline 798f9c8d5ef34ff07fd0f16816fb9609 https://www.encodeproject.org/files/ENCFF788TFX/@@download/ENCFF788TFX.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF145XHA bigWig fold change over control ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF272HDX, ENCFF487NQY 1065968571 ENCODE Processing Pipeline 2183aab7d239db62adc4ad6e8f6cede3 https://www.encodeproject.org/files/ENCFF145XHA/@@download/ENCFF145XHA.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF334LTA bam unfiltered alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 50 ENCFF142GQB, ENCFF643CGH 1337687977 ENCODE Processing Pipeline 4398f0013af16f92a2d8aa38a556653d https://www.encodeproject.org/files/ENCFF334LTA/@@download/ENCFF334LTA.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF542FVP bam unfiltered alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 50 ENCFF643CGH, ENCFF796BOA 1452746504 ENCODE Processing Pipeline 54ae208db0a543dc8b0210b6d1ef6992 https://www.encodeproject.org/files/ENCFF542FVP/@@download/ENCFF542FVP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF179DZP bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 50 ENCFF142GQB, ENCFF643CGH 1009499620 ENCODE Processing Pipeline 203e5b677d986af466c7c1aa5b23528e https://www.encodeproject.org/files/ENCFF179DZP/@@download/ENCFF179DZP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF022IWG bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 50 ENCFF643CGH, ENCFF796BOA 1110930941 ENCODE Processing Pipeline 2d7b6ff4a50d0ca7899669eace8ef953 https://www.encodeproject.org/files/ENCFF022IWG/@@download/ENCFF022IWG.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF530JRK bigWig signal p-value ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF179DZP, ENCFF285EWB 609496334 ENCODE Processing Pipeline 989ff52eaeed5fa6ec1e7e96f5e4e72a https://www.encodeproject.org/files/ENCFF530JRK/@@download/ENCFF530JRK.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF802ZEI bigWig signal p-value ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF022IWG, ENCFF709XAA 576816595 ENCODE Processing Pipeline 7e640b9ab25b345329e38b5bb978387a https://www.encodeproject.org/files/ENCFF802ZEI/@@download/ENCFF802ZEI.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF444QFG bigWig signal p-value ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF022IWG, ENCFF179DZP, ENCFF285EWB, ENCFF709XAA 1168088718 ENCODE Processing Pipeline 6f919c958fe3ef8e7917b2ad8cf95f93 https://www.encodeproject.org/files/ENCFF444QFG/@@download/ENCFF444QFG.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF590KRO bigWig fold change over control ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF179DZP, ENCFF285EWB 457540907 ENCODE Processing Pipeline 49dc06c82051414cef349053a78eed36 https://www.encodeproject.org/files/ENCFF590KRO/@@download/ENCFF590KRO.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF221HDL bigWig fold change over control ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF022IWG, ENCFF709XAA 519820430 ENCODE Processing Pipeline 0418cd17ed4ba2ce60696b0d0dd49ddb https://www.encodeproject.org/files/ENCFF221HDL/@@download/ENCFF221HDL.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF169IXM bigWig fold change over control ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF022IWG, ENCFF179DZP, ENCFF285EWB, ENCFF709XAA 1063890589 ENCODE Processing Pipeline fe70be4d4121862dc5de037aa9b00c49 https://www.encodeproject.org/files/ENCFF169IXM/@@download/ENCFF169IXM.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF012VEN bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF179DZP, ENCFF285EWB 5575038 ENCODE Processing Pipeline a0da133bb02c909a59365e9c0fb5b1c6 https://www.encodeproject.org/files/ENCFF012VEN/@@download/ENCFF012VEN.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF912NOY bigBed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF012VEN 13177542 ENCODE Processing Pipeline 3ccb8844ad3da7a20ee072fcfa909eae https://www.encodeproject.org/files/ENCFF912NOY/@@download/ENCFF912NOY.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF616ZNS bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF022IWG, ENCFF709XAA 6154120 ENCODE Processing Pipeline 401c8e3130f974f39b62190bbd35b252 https://www.encodeproject.org/files/ENCFF616ZNS/@@download/ENCFF616ZNS.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF749TXQ bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF022IWG, ENCFF179DZP, ENCFF285EWB, ENCFF709XAA 6839954 ENCODE Processing Pipeline 440dd0736e75bd9626047af766d381a7 https://www.encodeproject.org/files/ENCFF749TXQ/@@download/ENCFF749TXQ.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF652WXM bigBed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF616ZNS 13080977 ENCODE Processing Pipeline ae1204ef8ff9ac9fb94507e2b7dcdd61 https://www.encodeproject.org/files/ENCFF652WXM/@@download/ENCFF652WXM.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF915HPN bigBed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF749TXQ 13153933 ENCODE Processing Pipeline 292d59f428f81ef89fe68c87a07b2335 https://www.encodeproject.org/files/ENCFF915HPN/@@download/ENCFF915HPN.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF416YED bigBed narrowPeak optimal idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF272LLG 480593 ENCODE Processing Pipeline ce8572a36f11f88750b189c0450316a8 https://www.encodeproject.org/files/ENCFF416YED/@@download/ENCFF416YED.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF423GUZ bed narrowPeak conservative idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF012VEN, ENCFF419RSJ, ENCFF616ZNS, ENCFF749TXQ 194393 ENCODE Processing Pipeline 2d026b202d227201c41b84d65b209702 https://www.encodeproject.org/files/ENCFF423GUZ/@@download/ENCFF423GUZ.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF712PYE bigBed narrowPeak conservative idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF423GUZ 389797 ENCODE Processing Pipeline b7cf025520e2c3a09d5634f9b2409b75 https://www.encodeproject.org/files/ENCFF712PYE/@@download/ENCFF712PYE.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF272LLG bed narrowPeak optimal idr thresholded peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1, 2 ENCFF012VEN, ENCFF419RSJ, ENCFF616ZNS, ENCFF749TXQ 262233 ENCODE Processing Pipeline ef8ff622f37beebd0ba43150fe879b82 https://www.encodeproject.org/files/ENCFF272LLG/@@download/ENCFF272LLG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF000YAJ bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLJ 1594895 Peggy Farnham, USC 85b8ed68025e152beaa6e36c88be4868 https://www.encodeproject.org/files/ENCFF000YAJ/@@download/ENCFF000YAJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YAK bigWig signal ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 387550147 Peggy Farnham, USC 6ac6f864da35a50919c24866dc8f3095 https://www.encodeproject.org/files/ENCFF000YAK/@@download/ENCFF000YAK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YAR fastq reads ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 716138405 Peggy Farnham, USC 0a7fbc4beafff56a7e4ec7bc68f02053 https://www.encodeproject.org/files/ENCFF000YAR/@@download/ENCFF000YAR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YBC/ released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YAT fastq reads ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1509336770 Peggy Farnham, USC b53ebf0e0c778c16390cff6cec318228 https://www.encodeproject.org/files/ENCFF000YAT/@@download/ENCFF000YAT.fastq.gz Illumina Genome Analyzer /files/ENCFF000YBC/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VLJ bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 605320 Peggy Farnham, USC acb48b377345c35ec4d5c2d1c13b861b https://www.encodeproject.org/files/ENCFF001VLJ/@@download/ENCFF001VLJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CVD bed narrowPeak optimal idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 559821 ENCODE Consortium Analysis Working Group 45e0cb0ddada7adb182b762411f4c1c0 https://www.encodeproject.org/files/ENCFF002CVD/@@download/ENCFF002CVD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF919YKF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVD 1110667 ENCODE Consortium d07cba3f47b12469998af2ed8b256b65 https://www.encodeproject.org/files/ENCFF919YKF/@@download/ENCFF919YKF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YAF bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YAT 346951994 Michael Snyder, Stanford 179221a4576b7cc76a39546644b11161 https://www.encodeproject.org/files/ENCFF000YAF/@@download/ENCFF000YAF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YAI bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YAR 444395861 Michael Snyder, Stanford 986009c7013106ab2e241f5028078867 https://www.encodeproject.org/files/ENCFF000YAI/@@download/ENCFF000YAI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF815HYF bam unfiltered alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF643CGH 774359908 ENCODE Processing Pipeline 11755e47b89479371ed32cf7a804934a https://www.encodeproject.org/files/ENCFF815HYF/@@download/ENCFF815HYF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF958UOJ bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF643CGH 304648498 ENCODE Processing Pipeline 083601450f56798b115d1b8bdabd8aea https://www.encodeproject.org/files/ENCFF958UOJ/@@download/ENCFF958UOJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF755LCI bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YAT, ENCFF643CGH 746644790 ENCODE Processing Pipeline 53d2be44ad0d4c75023fa607b23338c8 https://www.encodeproject.org/files/ENCFF755LCI/@@download/ENCFF755LCI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF935FXZ bam unfiltered alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YAT, ENCFF643CGH 1585099777 ENCODE Processing Pipeline 7e60ea4ad8a49ca0d3f82d287831873e https://www.encodeproject.org/files/ENCFF935FXZ/@@download/ENCFF935FXZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF794ZQG bigWig signal p-value ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF495EUE 493205970 ENCODE Processing Pipeline 5f65d0c53e571a79257327b87e5f0569 https://www.encodeproject.org/files/ENCFF794ZQG/@@download/ENCFF794ZQG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF647FHC bigWig fold change over control ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF269ZZO, ENCFF379GUA 523666063 ENCODE Processing Pipeline a8bb9fb65796df1f01ba497124394064 https://www.encodeproject.org/files/ENCFF647FHC/@@download/ENCFF647FHC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF525GVK bigWig fold change over control ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF269ZZO, ENCFF379GUA, ENCFF495EUE 706999367 ENCODE Processing Pipeline 3806a1930b6c63c567e6f1381d375039 https://www.encodeproject.org/files/ENCFF525GVK/@@download/ENCFF525GVK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF822SAU bed narrowPeak optimal idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF222CSK, ENCFF311XFB, ENCFF991EAY 506227 ENCODE Processing Pipeline b147b14daf5660d3097f5ce840d9be19 https://www.encodeproject.org/files/ENCFF822SAU/@@download/ENCFF822SAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF179JTN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF822SAU 1048793 ENCODE Processing Pipeline 6ec0b8efb3f8a34ca8e294de9d627c34 https://www.encodeproject.org/files/ENCFF179JTN/@@download/ENCFF179JTN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF400WSD bigWig signal p-value ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF269ZZO, ENCFF379GUA 619365053 ENCODE Processing Pipeline 8ddcfa4da00b45635c8774fa134351c2 https://www.encodeproject.org/files/ENCFF400WSD/@@download/ENCFF400WSD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF121BOQ bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF991EAY 13076580 ENCODE Processing Pipeline 017da4ad1204f7f97a5b793b1098b0e2 https://www.encodeproject.org/files/ENCFF121BOQ/@@download/ENCFF121BOQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF426HYX bigWig signal p-value ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF269ZZO, ENCFF379GUA, ENCFF495EUE 674459962 ENCODE Processing Pipeline 4dfbcbc7eaabe38931d7746cfe92c429 https://www.encodeproject.org/files/ENCFF426HYX/@@download/ENCFF426HYX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF014TUC bigWig fold change over control ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF495EUE 319380132 ENCODE Processing Pipeline bb0034defc42d625973ab1395c7a85c3 https://www.encodeproject.org/files/ENCFF014TUC/@@download/ENCFF014TUC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF991EAY bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF495EUE 5328256 ENCODE Processing Pipeline 2ee5953aa6de0791f490b2026f3bd9bf https://www.encodeproject.org/files/ENCFF991EAY/@@download/ENCFF991EAY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF311XFB bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF269ZZO, ENCFF379GUA, ENCFF495EUE 6087639 ENCODE Processing Pipeline a417afd2621fbb8396e7b6ab2bea8f4d https://www.encodeproject.org/files/ENCFF311XFB/@@download/ENCFF311XFB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF836HMG bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF222CSK 13413011 ENCODE Processing Pipeline db28fab33ad708da5c0316a6479c9adb https://www.encodeproject.org/files/ENCFF836HMG/@@download/ENCFF836HMG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF107EHZ bed narrowPeak conservative idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF222CSK, ENCFF311XFB, ENCFF991EAY 400213 ENCODE Processing Pipeline 55fec1eaa49bb506391b03f990108bf2 https://www.encodeproject.org/files/ENCFF107EHZ/@@download/ENCFF107EHZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF269ZZO bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAT, ENCFF807MUK 813441110 ENCODE Processing Pipeline 330dd6044fa222470950ca1a066921e6 https://www.encodeproject.org/files/ENCFF269ZZO/@@download/ENCFF269ZZO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF186LML bam unfiltered alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAT, ENCFF807MUK 1667813895 ENCODE Processing Pipeline 10961a45a6dcbbedef577a172b141b21 https://www.encodeproject.org/files/ENCFF186LML/@@download/ENCFF186LML.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF343UMU bam unfiltered alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF807MUK 771474575 ENCODE Processing Pipeline a67480f3519251a17a772ed051e81759 https://www.encodeproject.org/files/ENCFF343UMU/@@download/ENCFF343UMU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF495EUE bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF807MUK 304771468 ENCODE Processing Pipeline 4173b837ac03ca846ce87c0dab6c9508 https://www.encodeproject.org/files/ENCFF495EUE/@@download/ENCFF495EUE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF870FDP bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF311XFB 13548859 ENCODE Processing Pipeline 07b4dc799f6b2e59abd3ee406dfd4d25 https://www.encodeproject.org/files/ENCFF870FDP/@@download/ENCFF870FDP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF222CSK bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF269ZZO, ENCFF379GUA 5545148 ENCODE Processing Pipeline 9e77f17dc7009f11ffe7875a5e005196 https://www.encodeproject.org/files/ENCFF222CSK/@@download/ENCFF222CSK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF202SFP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107EHZ 875188 ENCODE Processing Pipeline 3bcbeb42b07342a5e1ab39c01dfe86c1 https://www.encodeproject.org/files/ENCFF202SFP/@@download/ENCFF202SFP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF138JJR bam unfiltered alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF643CGH 774359905 ENCODE Processing Pipeline e911d38809fc64ab91ae9877046c4745 https://www.encodeproject.org/files/ENCFF138JJR/@@download/ENCFF138JJR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF865ULF bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAT, ENCFF643CGH 813253357 ENCODE Processing Pipeline 22b841ec655c0de6cdc3c1ca5de2dc11 https://www.encodeproject.org/files/ENCFF865ULF/@@download/ENCFF865ULF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF272PYA bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF643CGH 304648494 ENCODE Processing Pipeline 08b1486505dad066f1c00dd02998482b https://www.encodeproject.org/files/ENCFF272PYA/@@download/ENCFF272PYA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF642HPM bigWig signal p-value ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF108PMF, ENCFF865ULF 617117582 ENCODE Processing Pipeline d97794a12c56fb05acfa39df85708fa9 https://www.encodeproject.org/files/ENCFF642HPM/@@download/ENCFF642HPM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF472PGJ bam unfiltered alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAT, ENCFF643CGH 1675159193 ENCODE Processing Pipeline 984960387734448d2c4c6ac309795059 https://www.encodeproject.org/files/ENCFF472PGJ/@@download/ENCFF472PGJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF475ESH bigWig fold change over control ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF108PMF, ENCFF865ULF 521872932 ENCODE Processing Pipeline 590e153cc60e547a66626fba188a1d02 https://www.encodeproject.org/files/ENCFF475ESH/@@download/ENCFF475ESH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF930EVN bigWig fold change over control ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF108PMF, ENCFF272PYA 316878311 ENCODE Processing Pipeline 2860200d1d0ebba47158253513f95759 https://www.encodeproject.org/files/ENCFF930EVN/@@download/ENCFF930EVN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF813LKS bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF108PMF, ENCFF865ULF 5543017 ENCODE Processing Pipeline 6cc2f018c93b167a5c33d2f13d75c0a5 https://www.encodeproject.org/files/ENCFF813LKS/@@download/ENCFF813LKS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF756UDU bed narrowPeak conservative idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF010FVB, ENCFF419RSJ, ENCFF694HYO, ENCFF813LKS 394557 ENCODE Processing Pipeline 07b6d149fe7cd297654754fc768b1f7f https://www.encodeproject.org/files/ENCFF756UDU/@@download/ENCFF756UDU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF987YIJ bed narrowPeak optimal idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF010FVB, ENCFF419RSJ, ENCFF694HYO, ENCFF813LKS 503423 ENCODE Processing Pipeline bee4272df28b0fd89315bb7969d5d51e https://www.encodeproject.org/files/ENCFF987YIJ/@@download/ENCFF987YIJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF448ZVL bigWig signal p-value ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF108PMF, ENCFF272PYA 550702702 ENCODE Processing Pipeline 98fed395d959fb721e8d5839d5f11f33 https://www.encodeproject.org/files/ENCFF448ZVL/@@download/ENCFF448ZVL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF787KDS bigWig signal p-value ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF108PMF, ENCFF272PYA, ENCFF865ULF 633143523 ENCODE Processing Pipeline 3092d042eb30a06dafaf13671aefe53f https://www.encodeproject.org/files/ENCFF787KDS/@@download/ENCFF787KDS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF010FVB bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF108PMF, ENCFF272PYA, ENCFF865ULF 6058793 ENCODE Processing Pipeline 226245374d2c23af07f06dd8f6c25297 https://www.encodeproject.org/files/ENCFF010FVB/@@download/ENCFF010FVB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF736VJT bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF694HYO 12945687 ENCODE Processing Pipeline 7bf732798c8c6c833f37b33b3c107063 https://www.encodeproject.org/files/ENCFF736VJT/@@download/ENCFF736VJT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF338TSU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF756UDU 865299 ENCODE Processing Pipeline f759cedf1e59bb78357c0cb875a7b993 https://www.encodeproject.org/files/ENCFF338TSU/@@download/ENCFF338TSU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF543BEX bigWig fold change over control ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF108PMF, ENCFF272PYA, ENCFF865ULF 706526145 ENCODE Processing Pipeline a355d849d19a9e3b53f75530a86dedf4 https://www.encodeproject.org/files/ENCFF543BEX/@@download/ENCFF543BEX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF613SBR bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF813LKS 13417635 ENCODE Processing Pipeline 8ea2689f7f07996b54a5cdc97ef0bd74 https://www.encodeproject.org/files/ENCFF613SBR/@@download/ENCFF613SBR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF053IJZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF987YIJ 1043803 ENCODE Processing Pipeline 9b15f0178acacd9d878fceaafe00c36b https://www.encodeproject.org/files/ENCFF053IJZ/@@download/ENCFF053IJZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF694HYO bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF108PMF, ENCFF272PYA 5223855 ENCODE Processing Pipeline 5c5808fb160ba35b24a822eadbd65bc3 https://www.encodeproject.org/files/ENCFF694HYO/@@download/ENCFF694HYO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF214HCX bigBed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF010FVB 13519863 ENCODE Processing Pipeline 52bf59982377bf563861cd99a7433d70 https://www.encodeproject.org/files/ENCFF214HCX/@@download/ENCFF214HCX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000PBZ bam alignments ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PCM 1202382580 Richard Myers, HAIB e229ada0f57a590f77aae42b5eb78cc5 https://www.encodeproject.org/files/ENCFF000PBZ/@@download/ENCFF000PBZ.bam hg19 released biological replicates with identical biosample ENCFF000PCA bigBed broadPeak peaks ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEK 322128 Richard Myers, HAIB e759cf4b8f41b1e9c122d042d76509aa https://www.encodeproject.org/files/ENCFF000PCA/@@download/ENCFF000PCA.bigBed hg19 released biological replicates with identical biosample ENCFF000PCB bigBed broadPeak peaks ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UEL 351895 Richard Myers, HAIB d49f78c5710bd31fd1a760fa47bca0ed https://www.encodeproject.org/files/ENCFF000PCB/@@download/ENCFF000PCB.bigBed hg19 released biological replicates with identical biosample ENCFF000PCC bam alignments ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PCT 1688076972 Richard Myers, HAIB c3e5505f7902e280ca0b23ec5b884b82 https://www.encodeproject.org/files/ENCFF000PCC/@@download/ENCFF000PCC.bam hg19 released biological replicates with identical biosample ENCFF000PCF bigWig raw signal ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 1 1 153873465 Richard Myers, HAIB b07d43275bad958ac6cfc55f8c6bfa59 https://www.encodeproject.org/files/ENCFF000PCF/@@download/ENCFF000PCF.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PCG bigWig raw signal ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 2 1 270462226 Richard Myers, HAIB fd88783e3cf415a79ca40f4d2546db73 https://www.encodeproject.org/files/ENCFF000PCG/@@download/ENCFF000PCG.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PCM fastq reads ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1229658896 Richard Myers, HAIB e5cbd310772fdab1bb34822d1d1a056d https://www.encodeproject.org/files/ENCFF000PCM/@@download/ENCFF000PCM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PCT fastq reads ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1746306302 Richard Myers, HAIB 4ba89bb271d26099009a100368d61de9 https://www.encodeproject.org/files/ENCFF000PCT/@@download/ENCFF000PCT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEK bed broadPeak peaks ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 1 1 173956 Richard Myers, HAIB 0c843494b37001167975cfba86984c97 https://www.encodeproject.org/files/ENCFF001UEK/@@download/ENCFF001UEK.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UEL bed broadPeak peaks ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 2 1 197995 Richard Myers, HAIB 977415ef0f6d0692c47a7a31b89ec7c7 https://www.encodeproject.org/files/ENCFF001UEL/@@download/ENCFF001UEL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000BZC bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 1 1380023500 Bradley Bernstein, Broad cd45dd74d736750edc525b34be0c8408 https://www.encodeproject.org/files/ENCFF000BZC/@@download/ENCFF000BZC.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF000BZD bigBed broadPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SZP 3731332 Bradley Bernstein, Broad a2169f3a5c3ebd5a9e012eb3baee2d64 https://www.encodeproject.org/files/ENCFF000BZD/@@download/ENCFF000BZD.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF000BZE bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 1 1059817078 Bradley Bernstein, Broad 7beb4a2d1a9b7c4d8e841dab42c4755a https://www.encodeproject.org/files/ENCFF000BZE/@@download/ENCFF000BZE.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF000BZF bigWig signal ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 479829066 Bradley Bernstein, Broad 76b52d53a629bcbce73cb2907d05d881 https://www.encodeproject.org/files/ENCFF000BZF/@@download/ENCFF000BZF.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF001SZP bed broadPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2470892 Bradley Bernstein, Broad d0026a52d6bea2c296b0363ea5872197 https://www.encodeproject.org/files/ENCFF001SZP/@@download/ENCFF001SZP.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF002CEN bed narrowPeak optimal idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 274053 ENCODE Consortium Analysis Working Group f5a3c9dd317402f9b15b3c8a2028839c https://www.encodeproject.org/files/ENCFF002CEN/@@download/ENCFF002CEN.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF365FRX bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEN 740197 ENCODE Consortium f04bdba41ce0b6a9a024c9254a4d5f74 https://www.encodeproject.org/files/ENCFF365FRX/@@download/ENCFF365FRX.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF594HPD fastq reads ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1407602703 Bradley Bernstein, Broad 826b36a956025b2d520d9a22f9ecd52e https://www.encodeproject.org/files/ENCFF594HPD/@@download/ENCFF594HPD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF269QCW fastq reads ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1644208278 Bradley Bernstein, Broad 82bac54b95a5a791b6cdf07728cc7e9c https://www.encodeproject.org/files/ENCFF269QCW/@@download/ENCFF269QCW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF512DGF fastq reads ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 1 ENCFF988QDS 980885807 Bradley Bernstein, Broad cbd59a64624e9324633dae21214060aa https://www.encodeproject.org/files/ENCFF512DGF/@@download/ENCFF512DGF.fastq.gz Illumina HiSeq 2500 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate missing controlled_by, insufficient replicate concordance ENCFF988QDS fastq reads ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 2 ENCFF512DGF 988322933 Bradley Bernstein, Broad 495717047ab89500881f4b76c220b661 https://www.encodeproject.org/files/ENCFF988QDS/@@download/ENCFF988QDS.fastq.gz Illumina HiSeq 2500 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate missing controlled_by, insufficient replicate concordance ENCFF832OQS bam unfiltered alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF269QCW, ENCFF643CGH 2083236710 ENCODE Processing Pipeline 3d815e51a1d607a382d8ec16eb18fb33 https://www.encodeproject.org/files/ENCFF832OQS/@@download/ENCFF832OQS.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF105UTO bam unfiltered alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF269QCW, ENCFF807MUK 2074864379 ENCODE Processing Pipeline 03fcfc3765e1eaa9d1033438a117bda9 https://www.encodeproject.org/files/ENCFF105UTO/@@download/ENCFF105UTO.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF619AJU bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF594HPD, ENCFF643CGH 603421799 ENCODE Processing Pipeline 9f1bdc27de6edbae72f98bcdab698bfe https://www.encodeproject.org/files/ENCFF619AJU/@@download/ENCFF619AJU.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF977TIR bam unfiltered alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF594HPD, ENCFF643CGH 1752065017 ENCODE Processing Pipeline 37ffe8e057ede2d51646ca4134f38ef3 https://www.encodeproject.org/files/ENCFF977TIR/@@download/ENCFF977TIR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF564MCX bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF594HPD, ENCFF807MUK 603816064 ENCODE Processing Pipeline 1aa03c92d98c8cf405c97c26ba542f30 https://www.encodeproject.org/files/ENCFF564MCX/@@download/ENCFF564MCX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF698XSR bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF269QCW, ENCFF643CGH 802436260 ENCODE Processing Pipeline d7da76f447d2407f19f9f5a8beb32989 https://www.encodeproject.org/files/ENCFF698XSR/@@download/ENCFF698XSR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF570JFU bam unfiltered alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF594HPD, ENCFF807MUK 1743848821 ENCODE Processing Pipeline b79e0ce03f60c1d7a61749f7cd616ca9 https://www.encodeproject.org/files/ENCFF570JFU/@@download/ENCFF570JFU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF552DDV bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF269QCW, ENCFF807MUK 803068676 ENCODE Processing Pipeline 612a777fe95347b367bcc5fad666fc8c https://www.encodeproject.org/files/ENCFF552DDV/@@download/ENCFF552DDV.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF958AKY bigWig signal p-value ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF698XSR, ENCFF829HZY 537534461 ENCODE Processing Pipeline 4bc31b03215de1cb1fa52fc19a4426e6 https://www.encodeproject.org/files/ENCFF958AKY/@@download/ENCFF958AKY.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF003PUA bigWig signal p-value ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF552DDV, ENCFF574XYY 492903510 ENCODE Processing Pipeline 36848be363875d54f8b5d958fab4381b https://www.encodeproject.org/files/ENCFF003PUA/@@download/ENCFF003PUA.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF288AIT bigWig fold change over control ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF698XSR, ENCFF829HZY 359346481 ENCODE Processing Pipeline 4c7a0ba98ff9011d33277f65a9916ad6 https://www.encodeproject.org/files/ENCFF288AIT/@@download/ENCFF288AIT.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF711QEW bigWig fold change over control ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF552DDV, ENCFF574XYY 356585941 ENCODE Processing Pipeline 672926c1a7006140818c5e9ee5350161 https://www.encodeproject.org/files/ENCFF711QEW/@@download/ENCFF711QEW.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF822EWL bigWig signal p-value ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF564MCX 364579378 ENCODE Processing Pipeline 4471e60fe964ca5da2d58b5d8a353d2e https://www.encodeproject.org/files/ENCFF822EWL/@@download/ENCFF822EWL.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF589RXS bigWig signal p-value ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF552DDV, ENCFF564MCX, ENCFF574XYY 654138436 ENCODE Processing Pipeline 378dd5ed71fcde8d6ba149a986151661 https://www.encodeproject.org/files/ENCFF589RXS/@@download/ENCFF589RXS.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF445XTX bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF552DDV, ENCFF564MCX, ENCFF574XYY 6593091 ENCODE Processing Pipeline db83c687c4c3371f81aebb89beb9fc56 https://www.encodeproject.org/files/ENCFF445XTX/@@download/ENCFF445XTX.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF207GGD bigWig signal p-value ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF619AJU, ENCFF829HZY 314783286 ENCODE Processing Pipeline 731f92a100abafe8d52f4d085980fbc3 https://www.encodeproject.org/files/ENCFF207GGD/@@download/ENCFF207GGD.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF624ZMB bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF564MCX 4089103 ENCODE Processing Pipeline ea82d4eed548e69a4de334be39dbb6d8 https://www.encodeproject.org/files/ENCFF624ZMB/@@download/ENCFF624ZMB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF730PEC bigWig fold change over control ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF619AJU, ENCFF698XSR, ENCFF829HZY 602731329 ENCODE Processing Pipeline 5355b16d99c6ca54a1b67654b61ea993 https://www.encodeproject.org/files/ENCFF730PEC/@@download/ENCFF730PEC.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF451XDT bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF619AJU, ENCFF698XSR, ENCFF829HZY 6593181 ENCODE Processing Pipeline e9e8547d11621019dfdd58c4b2caad82 https://www.encodeproject.org/files/ENCFF451XDT/@@download/ENCFF451XDT.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF557FEK bigWig signal p-value ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF619AJU, ENCFF698XSR, ENCFF829HZY 653453267 ENCODE Processing Pipeline 8e40dc4e3663b5ce5e426e369237e22d https://www.encodeproject.org/files/ENCFF557FEK/@@download/ENCFF557FEK.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF333THQ bigWig fold change over control ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF619AJU, ENCFF829HZY 285166603 ENCODE Processing Pipeline df5ab07761ddce84cfd07ecf8eab2717 https://www.encodeproject.org/files/ENCFF333THQ/@@download/ENCFF333THQ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF200WFO bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF552DDV, ENCFF574XYY 6262092 ENCODE Processing Pipeline 584d30694373b6331099acf9088ef033 https://www.encodeproject.org/files/ENCFF200WFO/@@download/ENCFF200WFO.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF632RCU bigBed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF624ZMB 10349655 ENCODE Processing Pipeline 93f1825fb20e28bdd51a7c5faad25005 https://www.encodeproject.org/files/ENCFF632RCU/@@download/ENCFF632RCU.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF957IOZ bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF698XSR, ENCFF829HZY 6230662 ENCODE Processing Pipeline eb2d48e264637a5ff56086279676d4d2 https://www.encodeproject.org/files/ENCFF957IOZ/@@download/ENCFF957IOZ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF768HUH bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF130EPK 339504 ENCODE Processing Pipeline 86840b51ec033dbc9a369ddf5ca782c5 https://www.encodeproject.org/files/ENCFF768HUH/@@download/ENCFF768HUH.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF355ZSE bigWig fold change over control ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF552DDV, ENCFF564MCX, ENCFF574XYY 603575881 ENCODE Processing Pipeline e7d109e8fe557fe8dfd8f0f6c06d9fdc https://www.encodeproject.org/files/ENCFF355ZSE/@@download/ENCFF355ZSE.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF186FPQ bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF619AJU, ENCFF829HZY 4086222 ENCODE Processing Pipeline 0fc4c6ace37489f3bb0a1d61c5be4a3e https://www.encodeproject.org/files/ENCFF186FPQ/@@download/ENCFF186FPQ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF130EPK bed narrowPeak conservative idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF200WFO, ENCFF445XTX, ENCFF624ZMB 126972 ENCODE Processing Pipeline 9ce02ac022cf18c0759adbb97ecdec78 https://www.encodeproject.org/files/ENCFF130EPK/@@download/ENCFF130EPK.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF731ACC bigWig fold change over control ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF564MCX 284422950 ENCODE Processing Pipeline 578eb496a49879eb99275a05473b7499 https://www.encodeproject.org/files/ENCFF731ACC/@@download/ENCFF731ACC.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF813KNZ bigBed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF200WFO 12916793 ENCODE Processing Pipeline ddde0770958a966decb281fc60c716bd https://www.encodeproject.org/files/ENCFF813KNZ/@@download/ENCFF813KNZ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF075KDX bigBed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF445XTX 13068196 ENCODE Processing Pipeline a02b278c41efb45da91e5183a0b08ef3 https://www.encodeproject.org/files/ENCFF075KDX/@@download/ENCFF075KDX.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF357NRL bed narrowPeak optimal idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF200WFO, ENCFF445XTX, ENCFF624ZMB 306918 ENCODE Processing Pipeline 4beb039261783c24cc5bb12c501a81ac https://www.encodeproject.org/files/ENCFF357NRL/@@download/ENCFF357NRL.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF988QIS bigBed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF957IOZ 12890437 ENCODE Processing Pipeline 5dbe83089815e03cf08c37983a00425b https://www.encodeproject.org/files/ENCFF988QIS/@@download/ENCFF988QIS.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF273ZOG bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF557WXK 744038 ENCODE Processing Pipeline cee4764969209334d5f0018ee7223184 https://www.encodeproject.org/files/ENCFF273ZOG/@@download/ENCFF273ZOG.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF298LOI bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF357NRL 743724 ENCODE Processing Pipeline 08b3fcc81be3b5c2d3c7a88e1ed915b5 https://www.encodeproject.org/files/ENCFF298LOI/@@download/ENCFF298LOI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF234OKP bigBed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF186FPQ 10357589 ENCODE Processing Pipeline a7e0b65bf71378675f3a59e89e4734a3 https://www.encodeproject.org/files/ENCFF234OKP/@@download/ENCFF234OKP.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF016MVN bed narrowPeak conservative idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF186FPQ, ENCFF419RSJ, ENCFF451XDT, ENCFF957IOZ 128478 ENCODE Processing Pipeline f23bd1199cbf0d0723eea11d5a0d0e1a https://www.encodeproject.org/files/ENCFF016MVN/@@download/ENCFF016MVN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF953WXK bigBed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF451XDT 13074058 ENCODE Processing Pipeline 79677ff73440a793f287415727072158 https://www.encodeproject.org/files/ENCFF953WXK/@@download/ENCFF953WXK.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF269NFC bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF016MVN 342305 ENCODE Processing Pipeline 9cba638a0da7b99151892d7b4f545ea2 https://www.encodeproject.org/files/ENCFF269NFC/@@download/ENCFF269NFC.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF557WXK bed narrowPeak optimal idr thresholded peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF186FPQ, ENCFF419RSJ, ENCFF451XDT, ENCFF957IOZ 306909 ENCODE Processing Pipeline 2fd127e707de89023dde25732e1cf762 https://www.encodeproject.org/files/ENCFF557WXK/@@download/ENCFF557WXK.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF000XEB bam alignments ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XEK 335763267 Michael Snyder, Stanford 49cf97e68cf35048215c7fe5f4c72b80 https://www.encodeproject.org/files/ENCFF000XEB/@@download/ENCFF000XEB.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XEC bigBed narrowPeak peaks ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIK 160479 Michael Snyder, Stanford 04301773ca36df59cc68f7f1ddf6bf4b https://www.encodeproject.org/files/ENCFF000XEC/@@download/ENCFF000XEC.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XED bam alignments ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XEJ 436881622 Michael Snyder, Stanford 51440d3ec2ef1c95f44c8758e64008e5 https://www.encodeproject.org/files/ENCFF000XED/@@download/ENCFF000XED.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XEE bigWig signal ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 298008257 Michael Snyder, Stanford 6a97d28e75fb727ea8df36c92b413f86 https://www.encodeproject.org/files/ENCFF000XEE/@@download/ENCFF000XEE.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000XEJ fastq reads ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 776717062 Michael Snyder, Stanford ea595bd7438f3b74d930b1613c9bc5a2 https://www.encodeproject.org/files/ENCFF000XEJ/@@download/ENCFF000XEJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XEK fastq reads ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 598396815 Michael Snyder, Stanford 58da8fcbafccc3b12214b961aa9f8187 https://www.encodeproject.org/files/ENCFF000XEK/@@download/ENCFF000XEK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001VIK bed narrowPeak peaks ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 28682 Michael Snyder, Stanford 56021c52b1b9d18e366dc3ee566af0d6 https://www.encodeproject.org/files/ENCFF001VIK/@@download/ENCFF001VIK.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000MYZ bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MZH 960247009 Richard Myers, HAIB 554252b5bb32682d4cfbb80bc1f7dd50 https://www.encodeproject.org/files/ENCFF000MYZ/@@download/ENCFF000MYZ.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000MZA bigBed broadPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TSB 355600 Richard Myers, HAIB 00aeef2a3c55b6dbe82f88be52b41a9f https://www.encodeproject.org/files/ENCFF000MZA/@@download/ENCFF000MZA.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000MZB bigBed broadPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TSC 156380 Richard Myers, HAIB 4d88118bfd4e3783824a0f2390d5eaa3 https://www.encodeproject.org/files/ENCFF000MZB/@@download/ENCFF000MZB.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000MZC bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000MZO 1726125712 Richard Myers, HAIB c6aa012e30eb5e56c754e62bb3edf937 https://www.encodeproject.org/files/ENCFF000MZC/@@download/ENCFF000MZC.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000MZD bigWig raw signal ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 1 10046636 Richard Myers, HAIB 269ecc2fb517c13452281ef055412184 https://www.encodeproject.org/files/ENCFF000MZD/@@download/ENCFF000MZD.bigWig hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF000MZE bigWig raw signal ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 1 8250518 Richard Myers, HAIB 47567cf1bf8ec0913647c3636707c150 https://www.encodeproject.org/files/ENCFF000MZE/@@download/ENCFF000MZE.bigWig hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF000MZH fastq reads ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 938423847 Richard Myers, HAIB 712277c9c6650d4edc8100f503d29d14 https://www.encodeproject.org/files/ENCFF000MZH/@@download/ENCFF000MZH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000MZO fastq reads ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1674741967 Richard Myers, HAIB 944eca5ec69d8bbb749b53cb68569df6 https://www.encodeproject.org/files/ENCFF000MZO/@@download/ENCFF000MZO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF001TSB bed broadPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 1 189496 Richard Myers, HAIB 74b763804b53066fee7b6c67a0ff33b6 https://www.encodeproject.org/files/ENCFF001TSB/@@download/ENCFF001TSB.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TSC bed broadPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 1 68477 Richard Myers, HAIB a32afcb27505c126ef8f5b3e002cea90 https://www.encodeproject.org/files/ENCFF001TSC/@@download/ENCFF001TSC.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CFM bed narrowPeak optimal idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 129154 ENCODE Consortium Analysis Working Group f524690b4c0d59f8495f5b18cd0757dc https://www.encodeproject.org/files/ENCFF002CFM/@@download/ENCFF002CFM.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF126YVP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFM 391705 ENCODE Consortium 55aecbe5195bc423e9cadb7c49144973 https://www.encodeproject.org/files/ENCFF126YVP/@@download/ENCFF126YVP.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF714CRL bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZH, ENCFF643CGH 636745391 ENCODE Processing Pipeline 9b65b00f514227d3fc9fa9c912452220 https://www.encodeproject.org/files/ENCFF714CRL/@@download/ENCFF714CRL.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF917SFY bam unfiltered alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZH, ENCFF643CGH 1035670609 ENCODE Processing Pipeline d0dff5037d8054d20551e48a70c1f479 https://www.encodeproject.org/files/ENCFF917SFY/@@download/ENCFF917SFY.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF193VBZ bam unfiltered alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZO, ENCFF643CGH 1887869517 ENCODE Processing Pipeline 23e284edf89389b0a444eee9dcc5b3d2 https://www.encodeproject.org/files/ENCFF193VBZ/@@download/ENCFF193VBZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF824KPX bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZO, ENCFF643CGH 1268818315 ENCODE Processing Pipeline 48b146746f1b99b08e465e55fedca68b https://www.encodeproject.org/files/ENCFF824KPX/@@download/ENCFF824KPX.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF455WGF bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZH, ENCFF807MUK 636894057 ENCODE Processing Pipeline a06472a41f84678a897c6da0be6d6e44 https://www.encodeproject.org/files/ENCFF455WGF/@@download/ENCFF455WGF.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF935IYT bam unfiltered alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZH, ENCFF807MUK 1032678229 ENCODE Processing Pipeline 408cf84d99e165a5d85436742c16b0f7 https://www.encodeproject.org/files/ENCFF935IYT/@@download/ENCFF935IYT.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF118HVH bam unfiltered alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZO, ENCFF807MUK 1882238530 ENCODE Processing Pipeline fa10dbeb0c9b38eefb4189c4142961fb https://www.encodeproject.org/files/ENCFF118HVH/@@download/ENCFF118HVH.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF866ZRH bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZO, ENCFF807MUK 1268802984 ENCODE Processing Pipeline 051d61181186466547f7341edb38ead6 https://www.encodeproject.org/files/ENCFF866ZRH/@@download/ENCFF866ZRH.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF181CWU bigWig signal p-value ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF714CRL 623901937 ENCODE Processing Pipeline 15a1cd6acbb54e40575d441d7cf0e51d https://www.encodeproject.org/files/ENCFF181CWU/@@download/ENCFF181CWU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF717HDI bigWig signal p-value ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF824KPX 796747885 ENCODE Processing Pipeline 22129856aec26063a94af43dcf30ad64 https://www.encodeproject.org/files/ENCFF717HDI/@@download/ENCFF717HDI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF382IVN bigWig signal p-value ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF656HEF, ENCFF714CRL, ENCFF824KPX 852190104 ENCODE Processing Pipeline 364df81ddb0a18dc5aead566bd919d86 https://www.encodeproject.org/files/ENCFF382IVN/@@download/ENCFF382IVN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF241TGN bigWig fold change over control ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF714CRL 412039047 ENCODE Processing Pipeline badb010769c7f1e3ec56b90a536d31cc https://www.encodeproject.org/files/ENCFF241TGN/@@download/ENCFF241TGN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF352EUP bigWig fold change over control ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF824KPX 614387922 ENCODE Processing Pipeline 96a47ef41cd70662239e7692fc1e40b4 https://www.encodeproject.org/files/ENCFF352EUP/@@download/ENCFF352EUP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF509OEY bigWig fold change over control ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF656HEF, ENCFF714CRL, ENCFF824KPX 875074764 ENCODE Processing Pipeline 47111215095a48fb323cf3fb6080a3b9 https://www.encodeproject.org/files/ENCFF509OEY/@@download/ENCFF509OEY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF556YJA bigBed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF483ZNQ 13168586 ENCODE Processing Pipeline b16a7b5bbb840bf7cc6c421ed89443f3 https://www.encodeproject.org/files/ENCFF556YJA/@@download/ENCFF556YJA.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF185GGF bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF656HEF, ENCFF714CRL 6006918 ENCODE Processing Pipeline 68c01ecaac1f1da2a9033fc8ab85f2de https://www.encodeproject.org/files/ENCFF185GGF/@@download/ENCFF185GGF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF589YJD bigBed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF185GGF 13004978 ENCODE Processing Pipeline c5fa7c291f66181f3800d3a857a71aca https://www.encodeproject.org/files/ENCFF589YJD/@@download/ENCFF589YJD.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF483ZNQ bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF824KPX 6140924 ENCODE Processing Pipeline 8600cc7ee98d0b930bd0900c76d1ed4c https://www.encodeproject.org/files/ENCFF483ZNQ/@@download/ENCFF483ZNQ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF829JIE bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF656HEF, ENCFF714CRL, ENCFF824KPX 6850961 ENCODE Processing Pipeline 2bf2b868fd355915a5144025fda54496 https://www.encodeproject.org/files/ENCFF829JIE/@@download/ENCFF829JIE.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF500LMX bed narrowPeak conservative idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF185GGF, ENCFF419RSJ, ENCFF483ZNQ, ENCFF829JIE 142392 ENCODE Processing Pipeline 50043ebba63dae1f9b1fffa6bf358d67 https://www.encodeproject.org/files/ENCFF500LMX/@@download/ENCFF500LMX.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF493CDG bigBed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF829JIE 13068445 ENCODE Processing Pipeline 1a9b16f1a57a3882a6962436a3b90154 https://www.encodeproject.org/files/ENCFF493CDG/@@download/ENCFF493CDG.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF048WEZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF896WFR 432309 ENCODE Processing Pipeline e2d62a4def88d89825594a86989cfa7f https://www.encodeproject.org/files/ENCFF048WEZ/@@download/ENCFF048WEZ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF681ECC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF500LMX 373335 ENCODE Processing Pipeline 8b2db5ee95b035bb4b8d346a380af089 https://www.encodeproject.org/files/ENCFF681ECC/@@download/ENCFF681ECC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF896WFR bed narrowPeak optimal idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF185GGF, ENCFF419RSJ, ENCFF483ZNQ, ENCFF829JIE 176167 ENCODE Processing Pipeline 218a556fe2ef580fd10bc03726ab429f https://www.encodeproject.org/files/ENCFF896WFR/@@download/ENCFF896WFR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF261JCZ bigWig signal p-value ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF455WGF, ENCFF864UEQ 507235452 ENCODE Processing Pipeline f20c5476c44d682048b92d1ae397317d https://www.encodeproject.org/files/ENCFF261JCZ/@@download/ENCFF261JCZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF313IVW bigWig signal p-value ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF455WGF, ENCFF864UEQ, ENCFF866ZRH 863909601 ENCODE Processing Pipeline 3506bf3ea2bd8d888c01f4eac5aa8a20 https://www.encodeproject.org/files/ENCFF313IVW/@@download/ENCFF313IVW.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF634WCN bigWig signal p-value ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF864UEQ, ENCFF866ZRH 805705496 ENCODE Processing Pipeline ca47b3e68f113652bfc4b9092ca22b55 https://www.encodeproject.org/files/ENCFF634WCN/@@download/ENCFF634WCN.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF513EMF bigWig fold change over control ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF455WGF, ENCFF864UEQ 415796456 ENCODE Processing Pipeline 31aa1e39fe56961e8f4069339916c3c7 https://www.encodeproject.org/files/ENCFF513EMF/@@download/ENCFF513EMF.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF774NNP bigWig fold change over control ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF864UEQ, ENCFF866ZRH 645079171 ENCODE Processing Pipeline ffadccaed14404a6d264a34ab0c5177d https://www.encodeproject.org/files/ENCFF774NNP/@@download/ENCFF774NNP.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF998WPB bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF455WGF, ENCFF864UEQ 6000076 ENCODE Processing Pipeline b8d07bfaec10e7802d33075a25fbd008 https://www.encodeproject.org/files/ENCFF998WPB/@@download/ENCFF998WPB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF276JRH bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF864UEQ, ENCFF866ZRH 6141571 ENCODE Processing Pipeline d88e865ceb5df9636fa3bb8dfb312a3b https://www.encodeproject.org/files/ENCFF276JRH/@@download/ENCFF276JRH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF203XFJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF173ASR 371967 ENCODE Processing Pipeline 585392dc78a33ae34c13ff62bb8602eb https://www.encodeproject.org/files/ENCFF203XFJ/@@download/ENCFF203XFJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF297HAT bed narrowPeak optimal idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF276JRH, ENCFF394JUH, ENCFF998WPB 180375 ENCODE Processing Pipeline bf0caaa46405e97b31b7ab3ec0c68245 https://www.encodeproject.org/files/ENCFF297HAT/@@download/ENCFF297HAT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF434PCW bigWig fold change over control ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF455WGF, ENCFF864UEQ, ENCFF866ZRH 890049447 ENCODE Processing Pipeline 4c444acef82fc579948113bf4f96aaf2 https://www.encodeproject.org/files/ENCFF434PCW/@@download/ENCFF434PCW.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF394JUH bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF455WGF, ENCFF864UEQ, ENCFF866ZRH 6859537 ENCODE Processing Pipeline cdddcb8c59c2691086ff474687c6419c https://www.encodeproject.org/files/ENCFF394JUH/@@download/ENCFF394JUH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF628BSX bigBed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF998WPB 12997324 ENCODE Processing Pipeline 97fc423285d21c90f09ec7c579784434 https://www.encodeproject.org/files/ENCFF628BSX/@@download/ENCFF628BSX.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF685NUX bigBed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF276JRH 13168613 ENCODE Processing Pipeline 5b4681e0e5f25b7af8a9d6026eadc5a7 https://www.encodeproject.org/files/ENCFF685NUX/@@download/ENCFF685NUX.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF672LHA bigBed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF394JUH 13062935 ENCODE Processing Pipeline 34725c1b71851162d8283bb5d62fa609 https://www.encodeproject.org/files/ENCFF672LHA/@@download/ENCFF672LHA.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF173ASR bed narrowPeak conservative idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF276JRH, ENCFF394JUH, ENCFF998WPB 142760 ENCODE Processing Pipeline eb81e5d7350de164db9d67668a2aaa03 https://www.encodeproject.org/files/ENCFF173ASR/@@download/ENCFF173ASR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF007EXU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF297HAT 437645 ENCODE Processing Pipeline 4dc618015dfdfc47be1bf09d4020346c https://www.encodeproject.org/files/ENCFF007EXU/@@download/ENCFF007EXU.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000WYS bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WYY 440890959 Peggy Farnham, USC b7a0864189a5da54bb275780365d06b8 https://www.encodeproject.org/files/ENCFF000WYS/@@download/ENCFF000WYS.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WYT bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WZA 488367871 Peggy Farnham, USC 7fda32f7bd1d81a461d9236945f7aedd https://www.encodeproject.org/files/ENCFF000WYT/@@download/ENCFF000WYT.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WYU bigBed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHP 2197548 Peggy Farnham, USC d046cf204d263aa9109e7268bb856200 https://www.encodeproject.org/files/ENCFF000WYU/@@download/ENCFF000WYU.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WYX bigWig signal ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 353306058 Peggy Farnham, USC 4337627ff0aaf7a21b1a9d894b759565 https://www.encodeproject.org/files/ENCFF000WYX/@@download/ENCFF000WYX.bigWig hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WYY fastq reads ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1016938715 Peggy Farnham, USC 6bfcd8a2d4d55d0c72a893c26f51c7a1 https://www.encodeproject.org/files/ENCFF000WYY/@@download/ENCFF000WYY.fastq.gz Illumina Genome Analyzer /files/ENCFF000WZC/ released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WZA fastq reads ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 991233378 Peggy Farnham, USC b014d73e02a6e9e5bc3f03deab4ace1c https://www.encodeproject.org/files/ENCFF000WZA/@@download/ENCFF000WZA.fastq.gz Illumina Genome Analyzer /files/ENCFF000WZC/ released low read length, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF001VHP bed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 919551 Peggy Farnham, USC f797e793f087494efbc305068a2afb06 https://www.encodeproject.org/files/ENCFF001VHP/@@download/ENCFF001VHP.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CRQ bed narrowPeak optimal idr thresholded peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 624271 ENCODE Consortium Analysis Working Group d303f02a1d97ffeca6956990ab0c9ed0 https://www.encodeproject.org/files/ENCFF002CRQ/@@download/ENCFF002CRQ.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF370TXJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRQ 1433894 ENCODE Consortium ab1458cd5d4ddf08594b42e09ef53e43 https://www.encodeproject.org/files/ENCFF370TXJ/@@download/ENCFF370TXJ.bigBed hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF048QGM bam unfiltered alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WZA, ENCFF643CGH 1264121848 ENCODE Processing Pipeline fcebae3d97a5b138899f0225e7f5dc75 https://www.encodeproject.org/files/ENCFF048QGM/@@download/ENCFF048QGM.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF282LOM bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WZA, ENCFF643CGH 660130466 ENCODE Processing Pipeline cc99ba698e1017a23af65955e7d32668 https://www.encodeproject.org/files/ENCFF282LOM/@@download/ENCFF282LOM.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF610KXZ bam unfiltered alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WYY, ENCFF643CGH 1151304207 ENCODE Processing Pipeline 037101b65d713363d401f61f8d02a1b7 https://www.encodeproject.org/files/ENCFF610KXZ/@@download/ENCFF610KXZ.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF554BHA bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WYY, ENCFF643CGH 667470387 ENCODE Processing Pipeline 76308b340cd3e4e9673318768bad4927 https://www.encodeproject.org/files/ENCFF554BHA/@@download/ENCFF554BHA.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF244PMJ bigWig signal p-value ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF554BHA, ENCFF914STU 821182371 ENCODE Processing Pipeline 569aaefac55c225b6917b94ff0a706ba https://www.encodeproject.org/files/ENCFF244PMJ/@@download/ENCFF244PMJ.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF008SZS bigWig signal p-value ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF282LOM, ENCFF914STU 879503748 ENCODE Processing Pipeline 5c8cbed0170c90b0f5f68318e424fcdd https://www.encodeproject.org/files/ENCFF008SZS/@@download/ENCFF008SZS.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF705RGO bigWig signal p-value ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF282LOM, ENCFF554BHA, ENCFF914STU 955945973 ENCODE Processing Pipeline 632ab335d9fe56f2e40498765d2b96e6 https://www.encodeproject.org/files/ENCFF705RGO/@@download/ENCFF705RGO.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF944OCX bigWig fold change over control ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF554BHA, ENCFF914STU 683853576 ENCODE Processing Pipeline b8902803f2247924236408ae719e0fb4 https://www.encodeproject.org/files/ENCFF944OCX/@@download/ENCFF944OCX.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF367HGG bigWig fold change over control ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF282LOM, ENCFF554BHA, ENCFF914STU 1030798606 ENCODE Processing Pipeline e3a9b7aa0ec630032a36b88357289957 https://www.encodeproject.org/files/ENCFF367HGG/@@download/ENCFF367HGG.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF883YBP bed narrowPeak conservative idr thresholded peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF178XQA, ENCFF419RSJ, ENCFF822NGK, ENCFF956AHX 721513 ENCODE Processing Pipeline fab0ba45b6eac55de4a8cda20e674e34 https://www.encodeproject.org/files/ENCFF883YBP/@@download/ENCFF883YBP.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF827SZZ bed narrowPeak optimal idr thresholded peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF178XQA, ENCFF419RSJ, ENCFF822NGK, ENCFF956AHX 733978 ENCODE Processing Pipeline 9eb40391f182f86fe68d2321ae0969f0 https://www.encodeproject.org/files/ENCFF827SZZ/@@download/ENCFF827SZZ.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF322BBF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF827SZZ 1305605 ENCODE Processing Pipeline bfe0d8c93a4b9c7c06fd4c2512ffbd4d https://www.encodeproject.org/files/ENCFF322BBF/@@download/ENCFF322BBF.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF118JKW bigBed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF822NGK 12656707 ENCODE Processing Pipeline 841b8db814fff0c20c092141f83ce769 https://www.encodeproject.org/files/ENCFF118JKW/@@download/ENCFF118JKW.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF447BAO bigWig fold change over control ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF282LOM, ENCFF914STU 737295820 ENCODE Processing Pipeline 2c3103c8118e611b211ce0802d2a5a31 https://www.encodeproject.org/files/ENCFF447BAO/@@download/ENCFF447BAO.bigWig GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF956AHX bed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF554BHA, ENCFF914STU 6604905 ENCODE Processing Pipeline 4c7dc9b344181fb136dc81f630f5a042 https://www.encodeproject.org/files/ENCFF956AHX/@@download/ENCFF956AHX.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF178XQA bed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF282LOM, ENCFF554BHA, ENCFF914STU 6981279 ENCODE Processing Pipeline 194e4b30c62fe69552fab71f7375118d https://www.encodeproject.org/files/ENCFF178XQA/@@download/ENCFF178XQA.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF198UBF bigBed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF956AHX 12398569 ENCODE Processing Pipeline 3ed6177594c1e71196fa6b0ded0838dc https://www.encodeproject.org/files/ENCFF198UBF/@@download/ENCFF198UBF.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF175KFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF883YBP 1287720 ENCODE Processing Pipeline 7fbe9525d9a4fc866f557e263de8b167 https://www.encodeproject.org/files/ENCFF175KFW/@@download/ENCFF175KFW.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF600HDV bigBed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF178XQA 12590419 ENCODE Processing Pipeline 76cf4c161ce9073c7d5e0d1aa5cde184 https://www.encodeproject.org/files/ENCFF600HDV/@@download/ENCFF600HDV.bigBed GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF822NGK bed narrowPeak peaks ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF282LOM, ENCFF914STU 6740840 ENCODE Processing Pipeline 631a1635da5c1731a15d7da99a199ec4 https://www.encodeproject.org/files/ENCFF822NGK/@@download/ENCFF822NGK.bed.gz GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XVY bam alignments ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XWI 283404291 Michael Snyder, Stanford 8ad083e2a603fe2c91fa15454ab2f32f https://www.encodeproject.org/files/ENCFF000XVY/@@download/ENCFF000XVY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XVZ bam alignments ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XWF 127511080 Michael Snyder, Stanford da0d28a9fbad103e54ec40aa9502ec8c https://www.encodeproject.org/files/ENCFF000XVZ/@@download/ENCFF000XVZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWA bigBed narrowPeak peaks ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKS 769312 Michael Snyder, Stanford ff257fdbec8904982014fd8caf648d3f https://www.encodeproject.org/files/ENCFF000XWA/@@download/ENCFF000XWA.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWB bigWig signal ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 180066848 Michael Snyder, Stanford af45c52b3c1d2e4949ef8d50de51c837 https://www.encodeproject.org/files/ENCFF000XWB/@@download/ENCFF000XWB.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XWF fastq reads ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 102895819 Michael Snyder, Stanford 5955f762607a4409dc5e0dc51f4c145e https://www.encodeproject.org/files/ENCFF000XWF/@@download/ENCFF000XWF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF000XWI fastq reads ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 225591362 Michael Snyder, Stanford f1f8924d0a650a05c5c9568f007700e9 https://www.encodeproject.org/files/ENCFF000XWI/@@download/ENCFF000XWI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF001VKS bed narrowPeak peaks ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 301927 Michael Snyder, Stanford b8e66bf6d7770eb2e827523dff0c0422 https://www.encodeproject.org/files/ENCFF001VKS/@@download/ENCFF001VKS.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CUP bed narrowPeak optimal idr thresholded peaks ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 550142 ENCODE Consortium Analysis Working Group 726645eb31e03f0c961b3c8123096686 https://www.encodeproject.org/files/ENCFF002CUP/@@download/ENCFF002CUP.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF027JMX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUP 1424955 ENCODE Consortium 402074d9fdd1b08da8d86c749f618f4b https://www.encodeproject.org/files/ENCFF027JMX/@@download/ENCFF027JMX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF071WQM bam unfiltered alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 100 ENCFF470OUZ, ENCFF555QJQ, ENCFF807MUK 6544008049 ENCODE Processing Pipeline 02fc59d70bb781ede274b6c2423eae89 https://www.encodeproject.org/files/ENCFF071WQM/@@download/ENCFF071WQM.bam hg19 released missing genetic modification characterization ENCFF783XJP bam unfiltered alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 100 ENCFF052XOQ, ENCFF156EZY, ENCFF807MUK 6405764636 ENCODE Processing Pipeline d32385d9b7b5d3638666520349b96f7c https://www.encodeproject.org/files/ENCFF783XJP/@@download/ENCFF783XJP.bam hg19 released missing genetic modification characterization ENCFF555QJQ fastq reads ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF470OUZ 3033976451 Michael Snyder, Stanford 9099da2d40ae029c41fab8f6cf5750c0 SRA:SRR5111561 https://www.encodeproject.org/files/ENCFF555QJQ/@@download/ENCFF555QJQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF962SMK/ released missing genetic modification characterization ENCFF156EZY fastq reads ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF052XOQ 2955791855 Michael Snyder, Stanford 8ca0dcdc6c27934f5f099529a7ffaac3 SRA:SRR5111560 https://www.encodeproject.org/files/ENCFF156EZY/@@download/ENCFF156EZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF168MST/ released missing genetic modification characterization ENCFF052XOQ fastq reads ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF156EZY 2957732440 Michael Snyder, Stanford ca01e723abbd52f45ee712a2a1268e59 SRA:SRR5111560 https://www.encodeproject.org/files/ENCFF052XOQ/@@download/ENCFF052XOQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF962SMK/ released missing genetic modification characterization ENCFF470OUZ fastq reads ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF555QJQ 3031128498 Michael Snyder, Stanford 617fe70006baddc443924b316483ce3d SRA:SRR5111561 https://www.encodeproject.org/files/ENCFF470OUZ/@@download/ENCFF470OUZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF168MST/ released missing genetic modification characterization ENCFF014ABI bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 100 ENCFF052XOQ, ENCFF156EZY, ENCFF807MUK 5602767251 ENCODE Processing Pipeline 03cfc53293c16e417ab5440104db2fdf https://www.encodeproject.org/files/ENCFF014ABI/@@download/ENCFF014ABI.bam hg19 released missing genetic modification characterization ENCFF951SEJ bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 100 ENCFF470OUZ, ENCFF555QJQ, ENCFF807MUK 5721027203 ENCODE Processing Pipeline 28cd6efbabcf46b53c027a74e148aba5 https://www.encodeproject.org/files/ENCFF951SEJ/@@download/ENCFF951SEJ.bam hg19 released missing genetic modification characterization ENCFF936TIN bigWig signal p-value ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF014ABI, ENCFF242UOG 1243098769 ENCODE Processing Pipeline 340a127ae581a716f4af6dd633f56bcf https://www.encodeproject.org/files/ENCFF936TIN/@@download/ENCFF936TIN.bigWig hg19 released missing genetic modification characterization ENCFF473XBO bigWig signal p-value ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF014ABI, ENCFF242UOG, ENCFF951SEJ 1225003974 ENCODE Processing Pipeline a9377766f71f18a9dd7827851136dc35 https://www.encodeproject.org/files/ENCFF473XBO/@@download/ENCFF473XBO.bigWig hg19 released missing genetic modification characterization ENCFF647RXB bigWig fold change over control ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF014ABI, ENCFF242UOG 1259830615 ENCODE Processing Pipeline c58a5ae2200cd6e36624dce9b53054b0 https://www.encodeproject.org/files/ENCFF647RXB/@@download/ENCFF647RXB.bigWig hg19 released missing genetic modification characterization ENCFF212NWU bigWig fold change over control ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF014ABI, ENCFF242UOG, ENCFF951SEJ 1921876324 ENCODE Processing Pipeline d226d8f762dc6bb0fcfba60425644e88 https://www.encodeproject.org/files/ENCFF212NWU/@@download/ENCFF212NWU.bigWig hg19 released missing genetic modification characterization ENCFF260QKA bam unfiltered alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 100 ENCFF052XOQ, ENCFF156EZY, ENCFF643CGH 6417292076 ENCODE Processing Pipeline 3ad8091a3f5bc18d820d05791619209a https://www.encodeproject.org/files/ENCFF260QKA/@@download/ENCFF260QKA.bam GRCh38 released missing genetic modification characterization ENCFF273RLA bam unfiltered alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 100 ENCFF470OUZ, ENCFF555QJQ, ENCFF643CGH 6555484222 ENCODE Processing Pipeline b11f23e3b355e7d7b0c8241a98e8407f https://www.encodeproject.org/files/ENCFF273RLA/@@download/ENCFF273RLA.bam GRCh38 released missing genetic modification characterization ENCFF002PNZ bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 100 ENCFF052XOQ, ENCFF156EZY, ENCFF643CGH 5606367215 ENCODE Processing Pipeline 11aa9814636ded704a8a79a070202559 https://www.encodeproject.org/files/ENCFF002PNZ/@@download/ENCFF002PNZ.bam GRCh38 released missing genetic modification characterization ENCFF346SNT bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 100 ENCFF470OUZ, ENCFF555QJQ, ENCFF643CGH 5724769452 ENCODE Processing Pipeline a3a472c27be53e071a704fba11e5eb4b https://www.encodeproject.org/files/ENCFF346SNT/@@download/ENCFF346SNT.bam GRCh38 released missing genetic modification characterization ENCFF190WRD bigWig signal p-value ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF002PNZ, ENCFF779PRW 1249786121 ENCODE Processing Pipeline a0953fea9fd367b7cfe668e6ae1affb8 https://www.encodeproject.org/files/ENCFF190WRD/@@download/ENCFF190WRD.bigWig GRCh38 released missing genetic modification characterization ENCFF673HVA bigWig signal p-value ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF346SNT, ENCFF779PRW 1240314492 ENCODE Processing Pipeline c36f28b45471d0e0752740e84c67dc48 https://www.encodeproject.org/files/ENCFF673HVA/@@download/ENCFF673HVA.bigWig GRCh38 released missing genetic modification characterization ENCFF722BTU bigWig signal p-value ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF002PNZ, ENCFF346SNT, ENCFF779PRW 1215854624 ENCODE Processing Pipeline 4447c64ea938e78a114e9039c8f61af4 https://www.encodeproject.org/files/ENCFF722BTU/@@download/ENCFF722BTU.bigWig GRCh38 released missing genetic modification characterization ENCFF085DMU bigWig fold change over control ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF002PNZ, ENCFF779PRW 1267551776 ENCODE Processing Pipeline 3ec7512cfb0a074f4681244eea54445c https://www.encodeproject.org/files/ENCFF085DMU/@@download/ENCFF085DMU.bigWig GRCh38 released missing genetic modification characterization ENCFF116TBG bigWig fold change over control ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF346SNT, ENCFF779PRW 1280933669 ENCODE Processing Pipeline 77c8f60645327cfd4818f006464c542b https://www.encodeproject.org/files/ENCFF116TBG/@@download/ENCFF116TBG.bigWig GRCh38 released missing genetic modification characterization ENCFF988PMK bigWig fold change over control ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF002PNZ, ENCFF346SNT, ENCFF779PRW 1906953283 ENCODE Processing Pipeline dab836604df6b9fd9a521e5441514bbb https://www.encodeproject.org/files/ENCFF988PMK/@@download/ENCFF988PMK.bigWig GRCh38 released missing genetic modification characterization ENCFF266QUX bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF346SNT, ENCFF779PRW 7071353 ENCODE Processing Pipeline f859676fb70a9aa05e4aed818d55c2d7 https://www.encodeproject.org/files/ENCFF266QUX/@@download/ENCFF266QUX.bed.gz GRCh38 released missing genetic modification characterization ENCFF817YUO bigBed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF658HYK 13341527 ENCODE Processing Pipeline bea845e92926c1746c93877ec50f9f57 https://www.encodeproject.org/files/ENCFF817YUO/@@download/ENCFF817YUO.bigBed GRCh38 released missing genetic modification characterization ENCFF317ONF bigBed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF266QUX 13262660 ENCODE Processing Pipeline 8167cd7b6d1f7b9c497364543a715b76 https://www.encodeproject.org/files/ENCFF317ONF/@@download/ENCFF317ONF.bigBed GRCh38 released missing genetic modification characterization ENCFF658HYK bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF002PNZ, ENCFF779PRW 7133643 ENCODE Processing Pipeline c6957e9a6bc990b1091e536cfb6a34b2 https://www.encodeproject.org/files/ENCFF658HYK/@@download/ENCFF658HYK.bed.gz GRCh38 released missing genetic modification characterization ENCFF074FIK bigBed narrowPeak optimal idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF547SJG 2025143 ENCODE Processing Pipeline ff6013e6963ba38b3cd96ced52493525 https://www.encodeproject.org/files/ENCFF074FIK/@@download/ENCFF074FIK.bigBed GRCh38 released missing genetic modification characterization ENCFF547SJG bed narrowPeak optimal idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF266QUX, ENCFF419RSJ, ENCFF648FRJ, ENCFF658HYK 1166965 ENCODE Processing Pipeline 9566f5e3ed270c2ad7aee15acabe49d0 https://www.encodeproject.org/files/ENCFF547SJG/@@download/ENCFF547SJG.bed.gz GRCh38 released missing genetic modification characterization ENCFF393PNE bigBed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF648FRJ 13446238 ENCODE Processing Pipeline 2d32189f6a349074031ecc2248a79bde https://www.encodeproject.org/files/ENCFF393PNE/@@download/ENCFF393PNE.bigBed GRCh38 released missing genetic modification characterization ENCFF450DFK bed narrowPeak conservative idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF266QUX, ENCFF419RSJ, ENCFF648FRJ, ENCFF658HYK 998715 ENCODE Processing Pipeline 39df8b81ccfe1cd1c048ee456cd8a9ec https://www.encodeproject.org/files/ENCFF450DFK/@@download/ENCFF450DFK.bed.gz GRCh38 released missing genetic modification characterization ENCFF648FRJ bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF002PNZ, ENCFF346SNT, ENCFF779PRW 7317100 ENCODE Processing Pipeline 73e98d2139add6336a99283ea6145222 https://www.encodeproject.org/files/ENCFF648FRJ/@@download/ENCFF648FRJ.bed.gz GRCh38 released missing genetic modification characterization ENCFF223LLR bigBed narrowPeak conservative idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF450DFK 1781240 ENCODE Processing Pipeline 476e3ed4ae07686c7c045ce0c96eae08 https://www.encodeproject.org/files/ENCFF223LLR/@@download/ENCFF223LLR.bigBed GRCh38 released missing genetic modification characterization ENCFF913VGC bigWig signal p-value ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF242UOG, ENCFF951SEJ 1247919898 ENCODE Processing Pipeline b62b333c9f264d2c742a206fd6c48257 https://www.encodeproject.org/files/ENCFF913VGC/@@download/ENCFF913VGC.bigWig hg19 released missing genetic modification characterization ENCFF846YSF bigBed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF408FLA 13362247 ENCODE Processing Pipeline ea76b8ce20b131e14158c30d5ccce80b https://www.encodeproject.org/files/ENCFF846YSF/@@download/ENCFF846YSF.bigBed hg19 released missing genetic modification characterization ENCFF437CNI bigWig fold change over control ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF242UOG, ENCFF951SEJ 1291857610 ENCODE Processing Pipeline cd306948a8850848ca920e1b00e1fc89 https://www.encodeproject.org/files/ENCFF437CNI/@@download/ENCFF437CNI.bigWig hg19 released missing genetic modification characterization ENCFF460QGG bigBed narrowPeak conservative idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF231HJU 1760044 ENCODE Processing Pipeline eaf99ebc59112ad1b6019bb091317b3a https://www.encodeproject.org/files/ENCFF460QGG/@@download/ENCFF460QGG.bigBed hg19 released missing genetic modification characterization ENCFF441YTV bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF242UOG, ENCFF951SEJ 7188623 ENCODE Processing Pipeline 6ad9d97abd0b21bcd3a5d072ebdef340 https://www.encodeproject.org/files/ENCFF441YTV/@@download/ENCFF441YTV.bed.gz hg19 released missing genetic modification characterization ENCFF408FLA bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF014ABI, ENCFF242UOG 7154927 ENCODE Processing Pipeline 34514dcce76771f625e9a0f6c1b8e49e https://www.encodeproject.org/files/ENCFF408FLA/@@download/ENCFF408FLA.bed.gz hg19 released missing genetic modification characterization ENCFF828JWK bed narrowPeak optimal idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF408FLA, ENCFF441YTV, ENCFF519FSK 1173339 ENCODE Processing Pipeline 497b62adf65e7673d2d5bc8fa194a587 https://www.encodeproject.org/files/ENCFF828JWK/@@download/ENCFF828JWK.bed.gz hg19 released missing genetic modification characterization ENCFF519FSK bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF014ABI, ENCFF242UOG, ENCFF951SEJ 7330610 ENCODE Processing Pipeline b5ec04e6d7e8908d942922c35bb87cf8 https://www.encodeproject.org/files/ENCFF519FSK/@@download/ENCFF519FSK.bed.gz hg19 released missing genetic modification characterization ENCFF242UKP bigBed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF441YTV 13389002 ENCODE Processing Pipeline bd927cd3a3029cc4c36b33f44b181835 https://www.encodeproject.org/files/ENCFF242UKP/@@download/ENCFF242UKP.bigBed hg19 released missing genetic modification characterization ENCFF231HJU bed narrowPeak conservative idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF408FLA, ENCFF441YTV, ENCFF519FSK 989683 ENCODE Processing Pipeline 0925d905a9357d38186338a7bbe0d6a5 https://www.encodeproject.org/files/ENCFF231HJU/@@download/ENCFF231HJU.bed.gz hg19 released missing genetic modification characterization ENCFF255RLZ bigBed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF519FSK 13453537 ENCODE Processing Pipeline dee079f8818a751868e13e4e1187b4d1 https://www.encodeproject.org/files/ENCFF255RLZ/@@download/ENCFF255RLZ.bigBed hg19 released missing genetic modification characterization ENCFF171HTX bigBed narrowPeak optimal idr thresholded peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF828JWK 2022513 ENCODE Processing Pipeline f6b605a63134776280f16b3576085f7f https://www.encodeproject.org/files/ENCFF171HTX/@@download/ENCFF171HTX.bigBed hg19 released missing genetic modification characterization ENCFF000YUN bigBed narrowPeak peaks ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNX 127967 Sherman Weissman, Yale ed094e0bdd49afe0a1bf9da2eda1ea8c https://www.encodeproject.org/files/ENCFF000YUN/@@download/ENCFF000YUN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YUO bigWig signal ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 305967248 Sherman Weissman, Yale 7abe72aaf50c7a618848ae199d2d1703 https://www.encodeproject.org/files/ENCFF000YUO/@@download/ENCFF000YUO.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YUP bam alignments ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YVD 235932637 Sherman Weissman, Yale 5b72856ac7aecab95a0652bebf7de4f6 https://www.encodeproject.org/files/ENCFF000YUP/@@download/ENCFF000YUP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YUQ bam alignments ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YVH 213944831 Sherman Weissman, Yale 10126cfa6d815c97244a25c2b3a3e35f https://www.encodeproject.org/files/ENCFF000YUQ/@@download/ENCFF000YUQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YVD fastq reads ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 178642619 Sherman Weissman, Yale 061d2ddacc1eb03a13e6229d51105261 https://www.encodeproject.org/files/ENCFF000YVD/@@download/ENCFF000YVD.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YVH fastq reads ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 160994932 Sherman Weissman, Yale 88dab91f447b30537917cb15d6f13918 https://www.encodeproject.org/files/ENCFF000YVH/@@download/ENCFF000YVH.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VNX bed narrowPeak peaks ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 29060 Sherman Weissman, Yale 3d953871c7379fe1b0ce7a5c0776b24e https://www.encodeproject.org/files/ENCFF001VNX/@@download/ENCFF001VNX.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CXH bed narrowPeak optimal idr thresholded peaks ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 53709 ENCODE Consortium Analysis Working Group 3fa5b2aaff7064f6bb43628c6a33c4a5 https://www.encodeproject.org/files/ENCFF002CXH/@@download/ENCFF002CXH.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF307PPJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXH 156951 ENCODE Consortium c37f5d4004d1c60c5380e5aaad382990 https://www.encodeproject.org/files/ENCFF307PPJ/@@download/ENCFF307PPJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000PAK bam alignments ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PAX 1034726790 Richard Myers, HAIB 6aff9eca1b4439e6e8a20ce62f369853 https://www.encodeproject.org/files/ENCFF000PAK/@@download/ENCFF000PAK.bam hg19 released biological replicates with identical biosample ENCFF000PAL bam alignments ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PAW 1624474092 Richard Myers, HAIB b52edd411f7259d7dc244c56e879f0cc https://www.encodeproject.org/files/ENCFF000PAL/@@download/ENCFF000PAL.bam hg19 released biological replicates with identical biosample ENCFF000PAM bigBed broadPeak peaks ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEC 136978 Richard Myers, HAIB 0cd59980a2f0d9633e512873b36e7d38 https://www.encodeproject.org/files/ENCFF000PAM/@@download/ENCFF000PAM.bigBed hg19 released biological replicates with identical biosample ENCFF000PAN bigBed broadPeak peaks ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UED 149783 Richard Myers, HAIB 64a725cd98878576bb0fa7e6623d6cb8 https://www.encodeproject.org/files/ENCFF000PAN/@@download/ENCFF000PAN.bigBed hg19 released biological replicates with identical biosample ENCFF000PAO bigWig raw signal ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 220892607 Richard Myers, HAIB b085764b212fa0e072371603125fd730 https://www.encodeproject.org/files/ENCFF000PAO/@@download/ENCFF000PAO.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PAR bigWig raw signal ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 110657313 Richard Myers, HAIB ebb7e6979a3fc8d8dfd29924e0d83ea0 https://www.encodeproject.org/files/ENCFF000PAR/@@download/ENCFF000PAR.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PAW fastq reads ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1648840289 Richard Myers, HAIB 744d135c69a8c181f79dfa484050f60c https://www.encodeproject.org/files/ENCFF000PAW/@@download/ENCFF000PAW.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PAX fastq reads ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1046838211 Richard Myers, HAIB 2db6248e648cf87de915a357cce6ef32 https://www.encodeproject.org/files/ENCFF000PAX/@@download/ENCFF000PAX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEC bed broadPeak peaks ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 47451 Richard Myers, HAIB 0f71cf442a0a7578ceacedeb894e8fb9 https://www.encodeproject.org/files/ENCFF001UEC/@@download/ENCFF001UEC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UED bed broadPeak peaks ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 56352 Richard Myers, HAIB 8f5e07dca40500bb19c5dac5f285fe6e https://www.encodeproject.org/files/ENCFF001UED/@@download/ENCFF001UED.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XES bam alignments ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF000XEV 833038992 Michael Snyder, Stanford 0ab0c654afb08ba8df5ea1de78679691 https://www.encodeproject.org/files/ENCFF000XES/@@download/ENCFF000XES.bam hg19 released low read length biological replicates with identical biosample ENCFF000XET bam alignments ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF000XEX 575156715 Michael Snyder, Stanford b1ab07ab95e5632fdaa4d4fcc6cceacc https://www.encodeproject.org/files/ENCFF000XET/@@download/ENCFF000XET.bam hg19 released low read length biological replicates with identical biosample ENCFF000XEU bigBed narrowPeak peaks ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VIN 424823 Michael Snyder, Stanford d10281021cbca56ae120136a50066422 https://www.encodeproject.org/files/ENCFF000XEU/@@download/ENCFF000XEU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XEV fastq reads ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 627205206 Michael Snyder, Stanford 7eedde69a3cb0ba93ae1c3dd5a50231c https://www.encodeproject.org/files/ENCFF000XEV/@@download/ENCFF000XEV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XEX fastq reads ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1020212846 Michael Snyder, Stanford ed64a6e252bea68548472e362fcb3be1 https://www.encodeproject.org/files/ENCFF000XEX/@@download/ENCFF000XEX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XEZ bigWig signal ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 512810610 Michael Snyder, Stanford 9dad14df8fe163772a35d9d084bb7712 https://www.encodeproject.org/files/ENCFF000XEZ/@@download/ENCFF000XEZ.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001VIN bed narrowPeak peaks ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 205480 Michael Snyder, Stanford 6d32d6c7aa07fa1a57d545406590feb5 https://www.encodeproject.org/files/ENCFF001VIN/@@download/ENCFF001VIN.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000AHG bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AHR 1239266096 Bradley Bernstein, Broad 4fb9492eafe3bc810ba3fba4c298beb2 https://www.encodeproject.org/files/ENCFF000AHG/@@download/ENCFF000AHG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000AHH bigBed broadPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SSN 1939883 Bradley Bernstein, Broad f3351c22b7372c5217cd8e680d0b9d24 https://www.encodeproject.org/files/ENCFF000AHH/@@download/ENCFF000AHH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000AHI bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF000AHP 523696526 Bradley Bernstein, Broad 8959a0508e8ac2f2c9b73e1472bd0210 https://www.encodeproject.org/files/ENCFF000AHI/@@download/ENCFF000AHI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000AHK bigWig signal ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 332780277 Bradley Bernstein, Broad 04d3a7dd5d9b451b091eebd7dbae313e https://www.encodeproject.org/files/ENCFF000AHK/@@download/ENCFF000AHK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000AHP fastq reads ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 561817955 Bradley Bernstein, Broad 585eb00bed141b0616f62cd6d1d207a0 https://www.encodeproject.org/files/ENCFF000AHP/@@download/ENCFF000AHP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AHE/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000AHR fastq reads ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1265582603 Bradley Bernstein, Broad feb5213ff436eb6a32c0268f14131047 https://www.encodeproject.org/files/ENCFF000AHR/@@download/ENCFF000AHR.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AHJ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001SSN bed broadPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1071895 Bradley Bernstein, Broad 8ef05d807e6d1018e5d0e040c7b45008 https://www.encodeproject.org/files/ENCFF001SSN/@@download/ENCFF001SSN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF794CZB bam unfiltered alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AHR, ENCFF807MUK 1526799307 ENCODE Processing Pipeline bbb34162a97a843f7d40e0c97da9f8fe https://www.encodeproject.org/files/ENCFF794CZB/@@download/ENCFF794CZB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF685FVQ bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AHP, ENCFF807MUK 274338853 ENCODE Processing Pipeline 6d1bbae662ea6866d0f21d2a584ccd9c https://www.encodeproject.org/files/ENCFF685FVQ/@@download/ENCFF685FVQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF114PJN bam unfiltered alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AHP, ENCFF807MUK 692011797 ENCODE Processing Pipeline 7e871b85418ed6cd197478d8a56101ba https://www.encodeproject.org/files/ENCFF114PJN/@@download/ENCFF114PJN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF631JUR bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AHR, ENCFF807MUK 663028767 ENCODE Processing Pipeline cba5082862562fefe04c97ec237cc17b https://www.encodeproject.org/files/ENCFF631JUR/@@download/ENCFF631JUR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF296OYD bam unfiltered alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AHP, ENCFF643CGH 694849336 ENCODE Processing Pipeline 3a4245197433eee589f8d504b42d01e2 https://www.encodeproject.org/files/ENCFF296OYD/@@download/ENCFF296OYD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF944TNR bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AHP, ENCFF643CGH 274238842 ENCODE Processing Pipeline 9048ecf5a29639ce3c547825ecd8d177 https://www.encodeproject.org/files/ENCFF944TNR/@@download/ENCFF944TNR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF788OKP bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AHR, ENCFF643CGH 662828120 ENCODE Processing Pipeline 95da6df39998ba07734f11183bb16fe4 https://www.encodeproject.org/files/ENCFF788OKP/@@download/ENCFF788OKP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF600XPF bam unfiltered alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AHR, ENCFF643CGH 1534016367 ENCODE Processing Pipeline 7c3d034658a467d768878650de225810 https://www.encodeproject.org/files/ENCFF600XPF/@@download/ENCFF600XPF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF542QZW bigWig signal p-value ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP 587908559 ENCODE Processing Pipeline b4d5ddc35f5fcb869887f68daaca690b https://www.encodeproject.org/files/ENCFF542QZW/@@download/ENCFF542QZW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF474KPT bigWig fold change over control ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP 533131108 ENCODE Processing Pipeline a2baffde7fa161c1b80937cd34084e1d https://www.encodeproject.org/files/ENCFF474KPT/@@download/ENCFF474KPT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF967ABI bigWig signal p-value ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF514TMK, ENCFF569SHN, ENCFF944TNR 556613054 ENCODE Processing Pipeline 9eed2af428f9d518eb3d66751a41fec9 https://www.encodeproject.org/files/ENCFF967ABI/@@download/ENCFF967ABI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF868LBG bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP 5750712 ENCODE Processing Pipeline 3c031b4a2a9257a436ab3fe5d04af78a https://www.encodeproject.org/files/ENCFF868LBG/@@download/ENCFF868LBG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF935WTM bigBed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF185NJI 7749291 ENCODE Processing Pipeline d0cb8235d35e9b42574a6350bb2d7f88 https://www.encodeproject.org/files/ENCFF935WTM/@@download/ENCFF935WTM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF431HBI bigBed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF303LYL 13521556 ENCODE Processing Pipeline ecd8159fdac814a301b2cde3ff50cad9 https://www.encodeproject.org/files/ENCFF431HBI/@@download/ENCFF431HBI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF626SIB bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF615GTV 1807624 ENCODE Processing Pipeline 261930e00b9d954be59c521535992579 https://www.encodeproject.org/files/ENCFF626SIB/@@download/ENCFF626SIB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF744JGY bigWig signal p-value ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP, ENCFF944TNR 717326331 ENCODE Processing Pipeline 1857c39a47f99e0e4da9efe281190fdf https://www.encodeproject.org/files/ENCFF744JGY/@@download/ENCFF744JGY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF185NJI bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF514TMK, ENCFF569SHN, ENCFF944TNR 3734529 ENCODE Processing Pipeline 6fe5046380f9c11ee46a57acfd0cbb78 https://www.encodeproject.org/files/ENCFF185NJI/@@download/ENCFF185NJI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF303LYL bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP, ENCFF944TNR 5989089 ENCODE Processing Pipeline 88f2bb55e1599e6dd8aff4296e49d36c https://www.encodeproject.org/files/ENCFF303LYL/@@download/ENCFF303LYL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF491RAE bigBed narrowPeak conservative idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF378LBW 1624616 ENCODE Processing Pipeline ee765ecc7495ac47c47d03c0b9b97c50 https://www.encodeproject.org/files/ENCFF491RAE/@@download/ENCFF491RAE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF004BDD bigBed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF868LBG 13532982 ENCODE Processing Pipeline ae4452c082003d47893cbe4afe9052f3 https://www.encodeproject.org/files/ENCFF004BDD/@@download/ENCFF004BDD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF744LTW bigWig fold change over control ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF514TMK, ENCFF569SHN, ENCFF788OKP, ENCFF944TNR 655048849 ENCODE Processing Pipeline 59a0189cb3a7c53cb19b29ff320f6966 https://www.encodeproject.org/files/ENCFF744LTW/@@download/ENCFF744LTW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF615GTV bed narrowPeak optimal idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF185NJI, ENCFF303LYL, ENCFF419RSJ, ENCFF868LBG 914063 ENCODE Processing Pipeline 39f6644121517d0f32c11b4ebf0251e3 https://www.encodeproject.org/files/ENCFF615GTV/@@download/ENCFF615GTV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF119QKJ bigWig fold change over control ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF514TMK, ENCFF569SHN, ENCFF944TNR 255864483 ENCODE Processing Pipeline d7fe17409eff3a88e0606a71e3f61081 https://www.encodeproject.org/files/ENCFF119QKJ/@@download/ENCFF119QKJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF378LBW bed narrowPeak conservative idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF185NJI, ENCFF303LYL, ENCFF419RSJ, ENCFF868LBG 793392 ENCODE Processing Pipeline 4c505be101ebd635cacf4810f65e09c6 https://www.encodeproject.org/files/ENCFF378LBW/@@download/ENCFF378LBW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF916TVV bigWig signal p-value ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF289PMY, ENCFF685FVQ, ENCFF698OND 559990164 ENCODE Processing Pipeline 65c03cb75b3ba65dc2eb25449778d2f3 https://www.encodeproject.org/files/ENCFF916TVV/@@download/ENCFF916TVV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF781ICW bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF289PMY, ENCFF685FVQ, ENCFF698OND 3787582 ENCODE Processing Pipeline 21e96d4e43780edaff60b2cfd03428ee https://www.encodeproject.org/files/ENCFF781ICW/@@download/ENCFF781ICW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF340SIC bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF335GSE 1842344 ENCODE Processing Pipeline 9310c229a3f3be91bff297df22d696da https://www.encodeproject.org/files/ENCFF340SIC/@@download/ENCFF340SIC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF598UXB bigBed narrowPeak conservative idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF219RMZ 1640898 ENCODE Processing Pipeline 88a25650680a8f8ff9f2e4f6fb68a3a7 https://www.encodeproject.org/files/ENCFF598UXB/@@download/ENCFF598UXB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF175MMQ bigWig fold change over control ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF289PMY, ENCFF631JUR, ENCFF685FVQ, ENCFF698OND 654992744 ENCODE Processing Pipeline 4ac3fe67eaf3a301e13404899a09ddf3 https://www.encodeproject.org/files/ENCFF175MMQ/@@download/ENCFF175MMQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF484CVO bigWig signal p-value ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF289PMY, ENCFF631JUR, ENCFF685FVQ, ENCFF698OND 647289963 ENCODE Processing Pipeline 3e0a7a83a1831c7f64417a2c7f50ac40 https://www.encodeproject.org/files/ENCFF484CVO/@@download/ENCFF484CVO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF042ETH bigBed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF142SVH 13650505 ENCODE Processing Pipeline 2f807c6b417d6a34e5e4a685f867511b https://www.encodeproject.org/files/ENCFF042ETH/@@download/ENCFF042ETH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF335GSE bed narrowPeak optimal idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF014XSY, ENCFF142SVH, ENCFF781ICW 934065 ENCODE Processing Pipeline 1d3fadf80cf68565771e62c429c76195 https://www.encodeproject.org/files/ENCFF335GSE/@@download/ENCFF335GSE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF831YNT bigWig signal p-value ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF289PMY, ENCFF631JUR, ENCFF698OND 664434308 ENCODE Processing Pipeline 8a2728f71eddb2d1cc77e83b6aab8787 https://www.encodeproject.org/files/ENCFF831YNT/@@download/ENCFF831YNT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF357GYN bigWig fold change over control ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF289PMY, ENCFF631JUR, ENCFF698OND 532648125 ENCODE Processing Pipeline fceae9e2eef71e48dda025971079a8c5 https://www.encodeproject.org/files/ENCFF357GYN/@@download/ENCFF357GYN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF386EAT bigWig fold change over control ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF289PMY, ENCFF685FVQ, ENCFF698OND 255822561 ENCODE Processing Pipeline 05c430fa909be8a67dc3636ad826b5b2 https://www.encodeproject.org/files/ENCFF386EAT/@@download/ENCFF386EAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF014XSY bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF289PMY, ENCFF631JUR, ENCFF685FVQ, ENCFF698OND 6159477 ENCODE Processing Pipeline e0c8d95ab2bbf7c0fb23c43e133f1abd https://www.encodeproject.org/files/ENCFF014XSY/@@download/ENCFF014XSY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF181KZF bigBed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF781ICW 9353298 ENCODE Processing Pipeline e5df78df61bc4f5c362e90e93e13487a https://www.encodeproject.org/files/ENCFF181KZF/@@download/ENCFF181KZF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF142SVH bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF289PMY, ENCFF631JUR, ENCFF698OND 5855036 ENCODE Processing Pipeline 8541b4c839db43ae7c053eefceb4139e https://www.encodeproject.org/files/ENCFF142SVH/@@download/ENCFF142SVH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF174WKT bigBed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF014XSY 13668221 ENCODE Processing Pipeline 8aaf0a600de5f98e4fcf686913495d19 https://www.encodeproject.org/files/ENCFF174WKT/@@download/ENCFF174WKT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF219RMZ bed narrowPeak conservative idr thresholded peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF014XSY, ENCFF142SVH, ENCFF781ICW 804325 ENCODE Processing Pipeline c550913268d191f3b946654227b1dd09 https://www.encodeproject.org/files/ENCFF219RMZ/@@download/ENCFF219RMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NZI bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NZS 690577483 Richard Myers, HAIB badfe049f18e1b3446543f7f43f50929 https://www.encodeproject.org/files/ENCFF000NZI/@@download/ENCFF000NZI.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NZJ bigBed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYA 581977 Richard Myers, HAIB d61a088aef4fd259f6960148fb650b18 https://www.encodeproject.org/files/ENCFF000NZJ/@@download/ENCFF000NZJ.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NZK bigBed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYB 1014675 Richard Myers, HAIB bad613532a0d931eaa6e7dc6e150384a https://www.encodeproject.org/files/ENCFF000NZK/@@download/ENCFF000NZK.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NZL bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NZX 1228881878 Richard Myers, HAIB 5802de19006c59d71540a184a06b52ac https://www.encodeproject.org/files/ENCFF000NZL/@@download/ENCFF000NZL.bam hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NZM bigWig raw signal ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 14355265 Richard Myers, HAIB 842ffe2b45f53654a4cf4ef3d049cd67 https://www.encodeproject.org/files/ENCFF000NZM/@@download/ENCFF000NZM.bigWig hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NZN bigWig raw signal ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 37938613 Richard Myers, HAIB 70513f456e0c4e25ab4badc30c7443ec https://www.encodeproject.org/files/ENCFF000NZN/@@download/ENCFF000NZN.bigWig hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000NZS fastq reads ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1116127923 Richard Myers, HAIB f06824992b7e971a0c64711220a190cb https://www.encodeproject.org/files/ENCFF000NZS/@@download/ENCFF000NZS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NZX fastq reads ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1438184764 Richard Myers, HAIB b88b073fe53acccf8e67693c9c8beb65 https://www.encodeproject.org/files/ENCFF000NZX/@@download/ENCFF000NZX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF001TYA bed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 313249 Richard Myers, HAIB 175e3d4fe8bd5c393065a13fad5adb61 https://www.encodeproject.org/files/ENCFF001TYA/@@download/ENCFF001TYA.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001TYB bed broadPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 571633 Richard Myers, HAIB 68e59b97368344535065ee6e9469c90b https://www.encodeproject.org/files/ENCFF001TYB/@@download/ENCFF001TYB.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CHK bed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 383139 ENCODE Consortium Analysis Working Group bc78187f95b7ecfb2d41029a2b41319d https://www.encodeproject.org/files/ENCFF002CHK/@@download/ENCFF002CHK.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF957ZYT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHK 854332 ENCODE Consortium 6df8f004671a30394a872fb7d82b2c7f https://www.encodeproject.org/files/ENCFF957ZYT/@@download/ENCFF957ZYT.bigBed hg19 archived low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF857OQO bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF643CGH 1337442434 ENCODE Processing Pipeline bedeb0426d2329b280693d2cf06ce49e https://www.encodeproject.org/files/ENCFF857OQO/@@download/ENCFF857OQO.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF614SHU bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF643CGH 477999391 ENCODE Processing Pipeline 8abd6f677c6103e06df480f379e31b18 https://www.encodeproject.org/files/ENCFF614SHU/@@download/ENCFF614SHU.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF406HIQ bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF643CGH 1819559868 ENCODE Processing Pipeline b0a1803e73142757ffc6413e3bc44d42 https://www.encodeproject.org/files/ENCFF406HIQ/@@download/ENCFF406HIQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF475VQL bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF643CGH 935790985 ENCODE Processing Pipeline df19eeb9088288e455d4947a29b5289e https://www.encodeproject.org/files/ENCFF475VQL/@@download/ENCFF475VQL.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF051KDT bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF807MUK 1333855214 ENCODE Processing Pipeline ed510d11bbe769f5ccb3d5540500f806 https://www.encodeproject.org/files/ENCFF051KDT/@@download/ENCFF051KDT.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF228QWW bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF807MUK 477534235 ENCODE Processing Pipeline b14b448d35f78fa3280b5eafd27cb0ee https://www.encodeproject.org/files/ENCFF228QWW/@@download/ENCFF228QWW.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF216EUF bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF807MUK 929244003 ENCODE Processing Pipeline 4ccb9c5ab55377e50c6467c661aef965 https://www.encodeproject.org/files/ENCFF216EUF/@@download/ENCFF216EUF.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF498EOO bam unfiltered alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF807MUK 1814545700 ENCODE Processing Pipeline da91f57475239afdb48ae76f1bea91b6 https://www.encodeproject.org/files/ENCFF498EOO/@@download/ENCFF498EOO.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF446FQC bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF614SHU 252135596 ENCODE Processing Pipeline 5112bfeb6c7c96f87dde6744c897691f https://www.encodeproject.org/files/ENCFF446FQC/@@download/ENCFF446FQC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF837TKO bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF614SHU 510543387 ENCODE Processing Pipeline fa427e71891497d7e7cf94d71a6e550a https://www.encodeproject.org/files/ENCFF837TKO/@@download/ENCFF837TKO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF358KNT bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN 487138939 ENCODE Processing Pipeline 78eabfc72761db984ac7f5be38382a3e https://www.encodeproject.org/files/ENCFF358KNT/@@download/ENCFF358KNT.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF889FZO bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN 549442335 ENCODE Processing Pipeline e3bb1b9dfebaeabec2de738ae907af99 https://www.encodeproject.org/files/ENCFF889FZO/@@download/ENCFF889FZO.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF926EPQ bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN, ENCFF614SHU 731823797 ENCODE Processing Pipeline cf054f5d9306600e807602949784ef1a https://www.encodeproject.org/files/ENCFF926EPQ/@@download/ENCFF926EPQ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF631BGT bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF322OFP 8943892 ENCODE Processing Pipeline 8cc5d98d66f11d544e2361f62d8a30e0 https://www.encodeproject.org/files/ENCFF631BGT/@@download/ENCFF631BGT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF322OFP bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100EIH, ENCFF562HPN, ENCFF614SHU 3843589 ENCODE Processing Pipeline faf3ed090f1efdb117bcab54a33dde81 https://www.encodeproject.org/files/ENCFF322OFP/@@download/ENCFF322OFP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF745IWV bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN 5623493 ENCODE Processing Pipeline 69aeee6d2cbd908e3698c93460beac56 https://www.encodeproject.org/files/ENCFF745IWV/@@download/ENCFF745IWV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF851GCH bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN, ENCFF614SHU 635730648 ENCODE Processing Pipeline e2398aa2af3123ec6b12b721f34c7dd3 https://www.encodeproject.org/files/ENCFF851GCH/@@download/ENCFF851GCH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF041UZM bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100EIH, ENCFF475VQL, ENCFF562HPN, ENCFF614SHU 5797560 ENCODE Processing Pipeline cacf57dff2b18ae6e5515aa194a035df https://www.encodeproject.org/files/ENCFF041UZM/@@download/ENCFF041UZM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF946SAG bed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041UZM, ENCFF322OFP, ENCFF419RSJ, ENCFF745IWV 384608 ENCODE Processing Pipeline 2e7c73324c812bc0506c159899d6f263 https://www.encodeproject.org/files/ENCFF946SAG/@@download/ENCFF946SAG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF538DWL bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041UZM 13236941 ENCODE Processing Pipeline 433274a71935eb3c4855adc12cf24cfa https://www.encodeproject.org/files/ENCFF538DWL/@@download/ENCFF538DWL.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF659FRU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF946SAG 682173 ENCODE Processing Pipeline 7645fd4b1c0d3da4740a3f69e6ab8aae https://www.encodeproject.org/files/ENCFF659FRU/@@download/ENCFF659FRU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF259SNF bed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041UZM, ENCFF322OFP, ENCFF419RSJ, ENCFF745IWV 324899 ENCODE Processing Pipeline 18a5d138409bf6b5643a5a9b788d4b45 https://www.encodeproject.org/files/ENCFF259SNF/@@download/ENCFF259SNF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF990NTO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF259SNF 604538 ENCODE Processing Pipeline d10e6f9598b276ad6208b3c50dba354b https://www.encodeproject.org/files/ENCFF990NTO/@@download/ENCFF990NTO.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF791MAK bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF745IWV 13283988 ENCODE Processing Pipeline 07e4915a5970af439672ca02eb256174 https://www.encodeproject.org/files/ENCFF791MAK/@@download/ENCFF791MAK.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF043JKN bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 508708369 ENCODE Processing Pipeline 92da36fe17b49e61c70de17754bae769 https://www.encodeproject.org/files/ENCFF043JKN/@@download/ENCFF043JKN.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF422CWM bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 493135742 ENCODE Processing Pipeline 4c3538cf302dfc5a79d564cfdd9ca640 https://www.encodeproject.org/files/ENCFF422CWM/@@download/ENCFF422CWM.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF094ZSJ bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 555917325 ENCODE Processing Pipeline c020f49f51fadf7c59ae51f7bfba42e1 https://www.encodeproject.org/files/ENCFF094ZSJ/@@download/ENCFF094ZSJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF890HEQ bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 247153480 ENCODE Processing Pipeline 2173fa7f950b8f058a7887ad7f57ea3b https://www.encodeproject.org/files/ENCFF890HEQ/@@download/ENCFF890HEQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF955FMV bigWig signal p-value ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF216EUF, ENCFF228QWW, ENCFF958RTR 786422756 ENCODE Processing Pipeline f39b291a0eff6d4a827644716244558f https://www.encodeproject.org/files/ENCFF955FMV/@@download/ENCFF955FMV.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF906INE bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 5656449 ENCODE Processing Pipeline ccae6eee137a6eca43b13cf031ab40ef https://www.encodeproject.org/files/ENCFF906INE/@@download/ENCFF906INE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF735NFJ bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF216EUF, ENCFF228QWW, ENCFF958RTR 5936956 ENCODE Processing Pipeline ec78dbf6049c53ca7c1d5745da670af3 https://www.encodeproject.org/files/ENCFF735NFJ/@@download/ENCFF735NFJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF267GFQ bigWig fold change over control ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032WUR, ENCFF216EUF, ENCFF228QWW, ENCFF958RTR 636497894 ENCODE Processing Pipeline 840880993da7da9201371cf7e32dc1a0 https://www.encodeproject.org/files/ENCFF267GFQ/@@download/ENCFF267GFQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF309VXL bed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF194IYQ, ENCFF735NFJ, ENCFF906INE 331927 ENCODE Processing Pipeline 859cd6b5b5884cd546970f6b40b5b564 https://www.encodeproject.org/files/ENCFF309VXL/@@download/ENCFF309VXL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF199FYD bed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF194IYQ, ENCFF735NFJ, ENCFF906INE 384049 ENCODE Processing Pipeline 07b55f11fdb125a63ab500f783d05d7b https://www.encodeproject.org/files/ENCFF199FYD/@@download/ENCFF199FYD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF713WZT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199FYD 687358 ENCODE Processing Pipeline 6a0620dc80f01b4eebef2b8de5d7652d https://www.encodeproject.org/files/ENCFF713WZT/@@download/ENCFF713WZT.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF194IYQ bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 3798265 ENCODE Processing Pipeline fc8a1fe849827f33e155bfdfc02a37f0 https://www.encodeproject.org/files/ENCFF194IYQ/@@download/ENCFF194IYQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF854KAA bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF906INE 13326676 ENCODE Processing Pipeline e0b423aacaec984ee6801dea2c4f7d1b https://www.encodeproject.org/files/ENCFF854KAA/@@download/ENCFF854KAA.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF253VNE bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF735NFJ 13412328 ENCODE Processing Pipeline 0d38c6d1ba4d2faa25d0a9f220ac813b https://www.encodeproject.org/files/ENCFF253VNE/@@download/ENCFF253VNE.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF236TGB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF309VXL 617016 ENCODE Processing Pipeline acade4e2600f8422bc390cac749de5ba https://www.encodeproject.org/files/ENCFF236TGB/@@download/ENCFF236TGB.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF143SSP bigBed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF194IYQ 8870265 ENCODE Processing Pipeline 73d7c585a0d2a149e238565110980406 https://www.encodeproject.org/files/ENCFF143SSP/@@download/ENCFF143SSP.bigBed hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF000OSL bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OSU 885995435 Richard Myers, HAIB 5c711a96eb26b7443b05564634db351d https://www.encodeproject.org/files/ENCFF000OSL/@@download/ENCFF000OSL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OSM bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OSX 451558748 Richard Myers, HAIB f662baa6600ce5f9d9c600635230af61 https://www.encodeproject.org/files/ENCFF000OSM/@@download/ENCFF000OSM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OSN bigBed broadPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCD 66449 Richard Myers, HAIB e063cde57f8007c0b450cea747b35f1c https://www.encodeproject.org/files/ENCFF000OSN/@@download/ENCFF000OSN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OSO bigBed broadPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCF 110274 Richard Myers, HAIB cdf2ffb25827aa4d7796aa56b1b3c2e7 https://www.encodeproject.org/files/ENCFF000OSO/@@download/ENCFF000OSO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OSQ bigWig raw signal ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 979877 Richard Myers, HAIB 1be5a8f0664a309afee42ae7c308147c https://www.encodeproject.org/files/ENCFF000OSQ/@@download/ENCFF000OSQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OSR bigWig raw signal ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 6274714 Richard Myers, HAIB bad8d784637c745063fd293166d7c1a4 https://www.encodeproject.org/files/ENCFF000OSR/@@download/ENCFF000OSR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OSU fastq reads ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 648020753 Richard Myers, HAIB da4a8631384d6800e94489b448c8cbe0 https://www.encodeproject.org/files/ENCFF000OSU/@@download/ENCFF000OSU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OSX fastq reads ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 512955236 Richard Myers, HAIB 75ef4b1d1255ad7a0db4376dc014f642 https://www.encodeproject.org/files/ENCFF000OSX/@@download/ENCFF000OSX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UCD bed broadPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 12592 Richard Myers, HAIB 52501fb397a0d0f51f7531019f8e2249 https://www.encodeproject.org/files/ENCFF001UCD/@@download/ENCFF001UCD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UCF bed broadPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 43645 Richard Myers, HAIB 2aa1de653b685abb88e8c015db218501 https://www.encodeproject.org/files/ENCFF001UCF/@@download/ENCFF001UCF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CJH bed narrowPeak optimal idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 26542 ENCODE Consortium Analysis Working Group 156a09ea326e6d92c3b83927c6116c75 https://www.encodeproject.org/files/ENCFF002CJH/@@download/ENCFF002CJH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF993MMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJH 93452 ENCODE Consortium f295317895593dad7f913eef8f7e47fb https://www.encodeproject.org/files/ENCFF993MMT/@@download/ENCFF993MMT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF064LNE bam unfiltered alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSX, ENCFF643CGH 625645787 ENCODE Processing Pipeline f081a6ab0a572221b087ad783c4e0a46 https://www.encodeproject.org/files/ENCFF064LNE/@@download/ENCFF064LNE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF361FRE bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSX, ENCFF643CGH 218191852 ENCODE Processing Pipeline c3dcbb188845e1c2101b5ef2a9e876be https://www.encodeproject.org/files/ENCFF361FRE/@@download/ENCFF361FRE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF397JLL bam unfiltered alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSU, ENCFF643CGH 865842437 ENCODE Processing Pipeline 6012ab16e1666b20b63b8e286f9c05bd https://www.encodeproject.org/files/ENCFF397JLL/@@download/ENCFF397JLL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF816OHX bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSU, ENCFF643CGH 557367354 ENCODE Processing Pipeline d7b8e87b689e28e7285681c4145fcfb9 https://www.encodeproject.org/files/ENCFF816OHX/@@download/ENCFF816OHX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF615AON bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSU, ENCFF807MUK 557775431 ENCODE Processing Pipeline 9d94828820515847804e37fbc19849f1 https://www.encodeproject.org/files/ENCFF615AON/@@download/ENCFF615AON.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF856GRT bam unfiltered alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSU, ENCFF807MUK 862975070 ENCODE Processing Pipeline 3d733f26d60e7c55042c3983f3ad3a12 https://www.encodeproject.org/files/ENCFF856GRT/@@download/ENCFF856GRT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF925ROB bam unfiltered alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSX, ENCFF807MUK 624162992 ENCODE Processing Pipeline e2369572ea562d0d093eafe900982bb3 https://www.encodeproject.org/files/ENCFF925ROB/@@download/ENCFF925ROB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF117OSG bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSX, ENCFF807MUK 218430404 ENCODE Processing Pipeline 8a27ee39aade9bf5b076688945e56aa7 https://www.encodeproject.org/files/ENCFF117OSG/@@download/ENCFF117OSG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF801JGO bigWig signal p-value ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF361FRE, ENCFF816OHX, ENCFF948LKH 476392449 ENCODE Processing Pipeline e00a5287a4c93e6309a304482c21616f https://www.encodeproject.org/files/ENCFF801JGO/@@download/ENCFF801JGO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF134SMY bigWig fold change over control ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF361FRE, ENCFF816OHX, ENCFF948LKH 365761527 ENCODE Processing Pipeline 622678392bcef8909dcb4dd0fa160ccf https://www.encodeproject.org/files/ENCFF134SMY/@@download/ENCFF134SMY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF960MLI bigWig signal p-value ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF816OHX, ENCFF948LKH 352553081 ENCODE Processing Pipeline 67cdbd6cf7d1ea92085519fa3fb6240e https://www.encodeproject.org/files/ENCFF960MLI/@@download/ENCFF960MLI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF793PJS bigWig fold change over control ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF816OHX, ENCFF948LKH 266992020 ENCODE Processing Pipeline 10251b25b637ae73a2c482cb96022190 https://www.encodeproject.org/files/ENCFF793PJS/@@download/ENCFF793PJS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF425SFM bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF816OHX, ENCFF948LKH 3622109 ENCODE Processing Pipeline a1b5a0b3462ffb1c722de74e16832cb9 https://www.encodeproject.org/files/ENCFF425SFM/@@download/ENCFF425SFM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF909XXT bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF361FRE, ENCFF948LKH 2209099 ENCODE Processing Pipeline ac2c83dea62050dff455aebc76614805 https://www.encodeproject.org/files/ENCFF909XXT/@@download/ENCFF909XXT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF770XJR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF322AYC 91712 ENCODE Processing Pipeline 74bb1faa46d12ef3dc21fb98d786d0d2 https://www.encodeproject.org/files/ENCFF770XJR/@@download/ENCFF770XJR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF634SQG bigWig fold change over control ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF361FRE, ENCFF948LKH 133322604 ENCODE Processing Pipeline 94f3684ec630f5572afcf5c5d5fc6e0d https://www.encodeproject.org/files/ENCFF634SQG/@@download/ENCFF634SQG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF038IVP bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF361FRE, ENCFF816OHX, ENCFF948LKH 4022146 ENCODE Processing Pipeline 9abd6d78526161455610025b3e5cbe86 https://www.encodeproject.org/files/ENCFF038IVP/@@download/ENCFF038IVP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF430SIE bed narrowPeak optimal idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF038IVP, ENCFF419RSJ, ENCFF425SFM, ENCFF909XXT 35762 ENCODE Processing Pipeline 9f0108ecc1dd2dd7c60219069f22a2a3 https://www.encodeproject.org/files/ENCFF430SIE/@@download/ENCFF430SIE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF629ZKN bigWig signal p-value ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF361FRE, ENCFF948LKH 311515549 ENCODE Processing Pipeline 2e1172c3a55e55fd319fd6cd46da656b https://www.encodeproject.org/files/ENCFF629ZKN/@@download/ENCFF629ZKN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF585XPS bigBed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF425SFM 7855356 ENCODE Processing Pipeline b2b8b2bf82dee551b8a7051bcbe0f7ed https://www.encodeproject.org/files/ENCFF585XPS/@@download/ENCFF585XPS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF933YPD bigBed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF909XXT 4834824 ENCODE Processing Pipeline 9b1415205a6c16bc2fbcaa1aa8c61528 https://www.encodeproject.org/files/ENCFF933YPD/@@download/ENCFF933YPD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF951YMM bigBed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF038IVP 8540189 ENCODE Processing Pipeline 12a3f7773b79428cec4ee0c35faff0d6 https://www.encodeproject.org/files/ENCFF951YMM/@@download/ENCFF951YMM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF322AYC bed narrowPeak conservative idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF038IVP, ENCFF419RSJ, ENCFF425SFM, ENCFF909XXT 25047 ENCODE Processing Pipeline 89edc991032726b97800b2f0d9fec09e https://www.encodeproject.org/files/ENCFF322AYC/@@download/ENCFF322AYC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF736JWR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF430SIE 106683 ENCODE Processing Pipeline 1e8588cc412bd004f4f43f5e01598e57 https://www.encodeproject.org/files/ENCFF736JWR/@@download/ENCFF736JWR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF119JHR bigWig signal p-value ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF615AON 389296746 ENCODE Processing Pipeline a4046eb31c0896bf1eea958fe18c5c7a https://www.encodeproject.org/files/ENCFF119JHR/@@download/ENCFF119JHR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF143CFK bigWig fold change over control ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF615AON 269956710 ENCODE Processing Pipeline 3868746d414ec5adccdc9c0c72fda2df https://www.encodeproject.org/files/ENCFF143CFK/@@download/ENCFF143CFK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF820XWR bigWig signal p-value ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117OSG, ENCFF356DXM 319558056 ENCODE Processing Pipeline 72d2ddd00dbadeceecbf28a498e95235 https://www.encodeproject.org/files/ENCFF820XWR/@@download/ENCFF820XWR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF049YXQ bigWig signal p-value ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117OSG, ENCFF356DXM, ENCFF615AON 380076135 ENCODE Processing Pipeline 36d74dfe048ff42544abee513d922e30 https://www.encodeproject.org/files/ENCFF049YXQ/@@download/ENCFF049YXQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF095SQR bigWig fold change over control ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117OSG, ENCFF356DXM 132960124 ENCODE Processing Pipeline 77896665b6685511046bf5f56a0c650e https://www.encodeproject.org/files/ENCFF095SQR/@@download/ENCFF095SQR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF267CVT bigWig fold change over control ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117OSG, ENCFF356DXM, ENCFF615AON 366571092 ENCODE Processing Pipeline f906accb0eb30ab9d803e7a367d70c3c https://www.encodeproject.org/files/ENCFF267CVT/@@download/ENCFF267CVT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF914ZYY bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117OSG, ENCFF356DXM 2191945 ENCODE Processing Pipeline a2b7a8d8d086152f2616316ce5182a41 https://www.encodeproject.org/files/ENCFF914ZYY/@@download/ENCFF914ZYY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF701HCP bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF615AON 3777708 ENCODE Processing Pipeline a5bbc5dcb6e31d9607641f443d4d7084 https://www.encodeproject.org/files/ENCFF701HCP/@@download/ENCFF701HCP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF673CDR bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF117OSG, ENCFF356DXM, ENCFF615AON 4071579 ENCODE Processing Pipeline 3226a2a329d896f277acf29ccdeeec46 https://www.encodeproject.org/files/ENCFF673CDR/@@download/ENCFF673CDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF999RIK bigBed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701HCP 8226137 ENCODE Processing Pipeline b3e0aedffbf56fcd5f5d28317134f820 https://www.encodeproject.org/files/ENCFF999RIK/@@download/ENCFF999RIK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF721SYV bigBed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF673CDR 8585838 ENCODE Processing Pipeline 90b7ed8617126201a7664d0fdbc9e5bb https://www.encodeproject.org/files/ENCFF721SYV/@@download/ENCFF721SYV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF723GUK bed narrowPeak conservative idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF673CDR, ENCFF701HCP, ENCFF914ZYY 25021 ENCODE Processing Pipeline 85d378ea6a1c9e329f0e20e7f4c56ae5 https://www.encodeproject.org/files/ENCFF723GUK/@@download/ENCFF723GUK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF801RWC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF369JAI 104690 ENCODE Processing Pipeline fcc9fc7dd117d530173ff9c8c103cbdd https://www.encodeproject.org/files/ENCFF801RWC/@@download/ENCFF801RWC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF539KAF bigBed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF914ZYY 4770530 ENCODE Processing Pipeline 6a9e79a3e382afe339552e5292dbe267 https://www.encodeproject.org/files/ENCFF539KAF/@@download/ENCFF539KAF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF896TXX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF723GUK 91155 ENCODE Processing Pipeline c53bf3ff60745512006484ab63c51492 https://www.encodeproject.org/files/ENCFF896TXX/@@download/ENCFF896TXX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF369JAI bed narrowPeak optimal idr thresholded peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF673CDR, ENCFF701HCP, ENCFF914ZYY 35031 ENCODE Processing Pipeline 45eac8a6717368c2995378b49497d131 https://www.encodeproject.org/files/ENCFF369JAI/@@download/ENCFF369JAI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000YAV bam alignments ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YBA 855542253 Michael Snyder, Stanford 07026615bfd376e87b8340bef2a0ae7b https://www.encodeproject.org/files/ENCFF000YAV/@@download/ENCFF000YAV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAW bam alignments ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YBB 659069017 Michael Snyder, Stanford 5357b1655290828dbdcba510ec157240 https://www.encodeproject.org/files/ENCFF000YAW/@@download/ENCFF000YAW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAX bigBed narrowPeak peaks ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLK 293695 Michael Snyder, Stanford d41c954a8852cea66fde0089e01dd283 https://www.encodeproject.org/files/ENCFF000YAX/@@download/ENCFF000YAX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAY bigWig signal ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 360887391 Michael Snyder, Stanford 249c3972a5896350bd8858df140da960 https://www.encodeproject.org/files/ENCFF000YAY/@@download/ENCFF000YAY.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YBA fastq reads ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 685525711 Michael Snyder, Stanford 7672f8cf4d3c81f213dee8faaa3c840a https://www.encodeproject.org/files/ENCFF000YBA/@@download/ENCFF000YBA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YAU/ released biological replicates with identical biosample insufficient read length ENCFF000YBB fastq reads ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 539844529 Michael Snyder, Stanford b1a7fd5360e91b8403580bb868ed6c30 https://www.encodeproject.org/files/ENCFF000YBB/@@download/ENCFF000YBB.fastq.gz Illumina Genome Analyzer /files/ENCFF000YAZ/ released biological replicates with identical biosample insufficient read length ENCFF001VLK bed narrowPeak peaks ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 95450 Michael Snyder, Stanford 3d3531f299c1daa39d735c4d19cd2359 https://www.encodeproject.org/files/ENCFF001VLK/@@download/ENCFF001VLK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CVE bed narrowPeak optimal idr thresholded peaks ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 202694 ENCODE Consortium Analysis Working Group 49d2220b47726f1448c459b0c7fdb9f0 https://www.encodeproject.org/files/ENCFF002CVE/@@download/ENCFF002CVE.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF127FNA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVE 435115 ENCODE Consortium c33c3e8f911e5396e7f090c3c6357436 https://www.encodeproject.org/files/ENCFF127FNA/@@download/ENCFF127FNA.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXS bam alignments ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYD 117633023 Sherman Weissman, Yale 6ffc14c1d63e8856a153de0051c6a9eb https://www.encodeproject.org/files/ENCFF000XXS/@@download/ENCFF000XXS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXT bam alignments ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYK 168299120 Sherman Weissman, Yale 851d627d5a2878c3dbe3b5d1c752fbb5 https://www.encodeproject.org/files/ENCFF000XXT/@@download/ENCFF000XXT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXU bam alignments ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XYL 220987591 Sherman Weissman, Yale ef27232f81f7f1d25e2b3e2a442673a7 https://www.encodeproject.org/files/ENCFF000XXU/@@download/ENCFF000XXU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXV bigBed narrowPeak peaks ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLA 20300 Sherman Weissman, Yale c7ebf7c98623f5996e724913ec59e72b https://www.encodeproject.org/files/ENCFF000XXV/@@download/ENCFF000XXV.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXW bigWig signal ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 314597181 Sherman Weissman, Yale c20cd5dc24879d4dbdcf4756f619bf3d https://www.encodeproject.org/files/ENCFF000XXW/@@download/ENCFF000XXW.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XYD fastq reads ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 87565949 Sherman Weissman, Yale 174102337760f2fa0d0f8f87109dba46 https://www.encodeproject.org/files/ENCFF000XYD/@@download/ENCFF000XYD.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XYK fastq reads ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 128672043 Sherman Weissman, Yale ebd6d711a4e88980e44e3efb66158800 https://www.encodeproject.org/files/ENCFF000XYK/@@download/ENCFF000XYK.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XYL fastq reads ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 166216177 Sherman Weissman, Yale b2c0f72a2940fb97be0c5c162f5bb21b https://www.encodeproject.org/files/ENCFF000XYL/@@download/ENCFF000XYL.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VLA bed narrowPeak peaks ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3187 Sherman Weissman, Yale 4996830829c4ec196f7acd3d9da4ff2f https://www.encodeproject.org/files/ENCFF001VLA/@@download/ENCFF001VLA.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RTZ bam alignments ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RUI 304787551 Vishwanath Iyer, UTA 0421dbb3a39f0fc2450920bd7f96a978 https://www.encodeproject.org/files/ENCFF000RTZ/@@download/ENCFF000RTZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUB bam alignments ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RUJ 290716582 Vishwanath Iyer, UTA b9a0a82095cd5aba8ceb50cac4397c52 https://www.encodeproject.org/files/ENCFF000RUB/@@download/ENCFF000RUB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUC bigWig base overlap signal ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 100372270 Vishwanath Iyer, UTA b7dce093849e8bf0299298b418d92985 https://www.encodeproject.org/files/ENCFF000RUC/@@download/ENCFF000RUC.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000RUD bigBed narrowPeak peaks ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USY 2228551 Vishwanath Iyer, UTA ae9bbe8beb8aeddb742f97d8254197c7 https://www.encodeproject.org/files/ENCFF000RUD/@@download/ENCFF000RUD.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUE bigWig signal ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 4645233941 Vishwanath Iyer, UTA d33260c7525ff41275cf26d62229b776 https://www.encodeproject.org/files/ENCFF000RUE/@@download/ENCFF000RUE.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RUF tar validation ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 25367951 Vishwanath Iyer, UTA 9ebf789ffc7436d49712af26b5cdb04e https://www.encodeproject.org/files/ENCFF000RUF/@@download/ENCFF000RUF.tar.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RUI fastq reads ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 300162460 Vishwanath Iyer, UTA 8265f525858edd5e00a75471499bc650 https://www.encodeproject.org/files/ENCFF000RUI/@@download/ENCFF000RUI.fastq.gz Illumina Genome Analyzer /files/ENCFF000RUP/ released biological replicates with identical biosample insufficient read length ENCFF000RUJ fastq reads ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 289053623 Vishwanath Iyer, UTA 3b236e74cf471a3f1c60dfd0599f6238 https://www.encodeproject.org/files/ENCFF000RUJ/@@download/ENCFF000RUJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000RUP/ released biological replicates with identical biosample insufficient read length ENCFF001USY bed narrowPeak peaks ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1387116 Vishwanath Iyer, UTA aefe60b388b602f45494cebd7fe7b00c https://www.encodeproject.org/files/ENCFF001USY/@@download/ENCFF001USY.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002DAX bed narrowPeak optimal idr thresholded peaks ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 754913 ENCODE Consortium Analysis Working Group ecbae2a248b1e92b1f5eb99c8d762a63 https://www.encodeproject.org/files/ENCFF002DAX/@@download/ENCFF002DAX.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF664TRH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAX 1355986 ENCODE Consortium f27bc5437095379cf857ffbe94232253 https://www.encodeproject.org/files/ENCFF664TRH/@@download/ENCFF664TRH.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VOJ bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 1 618074111 Michael Snyder, Stanford 46cfd8500ffc8f8b47a756e6a967608a https://www.encodeproject.org/files/ENCFF000VOJ/@@download/ENCFF000VOJ.bam hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VOK bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VDN 3804664 Michael Snyder, Stanford 4edb88f8a46961257124b03bd7cf85c4 https://www.encodeproject.org/files/ENCFF000VOK/@@download/ENCFF000VOK.bigBed hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VOL fastq reads ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1086078792 Michael Snyder, Stanford 22e3ae81b72f06ebc2c74148906e04d0 https://www.encodeproject.org/files/ENCFF000VOL/@@download/ENCFF000VOL.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPI/ released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VON fastq reads ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 816709642 Michael Snyder, Stanford effe33891d78c4da92c90386cbb2ae4c https://www.encodeproject.org/files/ENCFF000VON/@@download/ENCFF000VON.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPK/ released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VOO bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 1 471994929 Michael Snyder, Stanford 59ba2b1f42db5369f839cd0f6f5afbca https://www.encodeproject.org/files/ENCFF000VOO/@@download/ENCFF000VOO.bam hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000VOQ bigWig signal ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 405995360 Michael Snyder, Stanford e558b3e4ff02e48c70791c76d8cf054e https://www.encodeproject.org/files/ENCFF000VOQ/@@download/ENCFF000VOQ.bigWig hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VDN bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1735682 Michael Snyder, Stanford d909d96db3f4b8d2412dd7653af29d7e https://www.encodeproject.org/files/ENCFF001VDN/@@download/ENCFF001VDN.bed.gz hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002COD bed narrowPeak optimal idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 852505 ENCODE Consortium Analysis Working Group ebe8fa2c3ea787b5fd903756eff2a90f https://www.encodeproject.org/files/ENCFF002COD/@@download/ENCFF002COD.bed.gz hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF794DLR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COD 1697307 ENCODE Consortium fc7ff59735abc83a4da45632c2c28a99 https://www.encodeproject.org/files/ENCFF794DLR/@@download/ENCFF794DLR.bigBed hg19 archived low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF466UIS bam unfiltered alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VON, ENCFF643CGH 926263223 ENCODE Processing Pipeline b0bdf3a9b69f3cb45fb9c313a6ba88e3 https://www.encodeproject.org/files/ENCFF466UIS/@@download/ENCFF466UIS.bam GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF912PMA bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VON, ENCFF643CGH 634374726 ENCODE Processing Pipeline 07aafe3c4016afcdb99fbcad7ea44039 https://www.encodeproject.org/files/ENCFF912PMA/@@download/ENCFF912PMA.bam GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF526NIP bam unfiltered alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VOL, ENCFF643CGH 1233495677 ENCODE Processing Pipeline 3eaa3a874f96e7af01805afbd4e8ad47 https://www.encodeproject.org/files/ENCFF526NIP/@@download/ENCFF526NIP.bam GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF142OZB bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VOL, ENCFF643CGH 863215710 ENCODE Processing Pipeline 1b9d22bac49807c9af25af40c3a9fb78 https://www.encodeproject.org/files/ENCFF142OZB/@@download/ENCFF142OZB.bam GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF299TQK bam unfiltered alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VOL, ENCFF847CCY 1225991960 ENCODE Processing Pipeline f254e93ab6656d3255f03f4685dd767e https://www.encodeproject.org/files/ENCFF299TQK/@@download/ENCFF299TQK.bam hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF038HOX bam unfiltered alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VON, ENCFF847CCY 920134818 ENCODE Processing Pipeline f9cc47f8ab82a01766dd887ed590c276 https://www.encodeproject.org/files/ENCFF038HOX/@@download/ENCFF038HOX.bam hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF940YYO bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VOL, ENCFF847CCY 863160003 ENCODE Processing Pipeline 14b1af885b9b9b6996987cc9bcaeb561 https://www.encodeproject.org/files/ENCFF940YYO/@@download/ENCFF940YYO.bam hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF644WIF bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VON, ENCFF847CCY 634377812 ENCODE Processing Pipeline 9faaf8bfe0c7db9ca374d29adf7379a7 https://www.encodeproject.org/files/ENCFF644WIF/@@download/ENCFF644WIF.bam hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF007NTY bigWig fold change over control ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF142OZB, ENCFF777NWU, ENCFF857MFM 518380103 ENCODE Processing Pipeline 1daa22cd657d6fbb8989560d1c6886db https://www.encodeproject.org/files/ENCFF007NTY/@@download/ENCFF007NTY.bigWig GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF502GET bigWig signal p-value ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF777NWU, ENCFF857MFM, ENCFF912PMA 553890197 ENCODE Processing Pipeline 45cad5bbf17fe89125dbed566be20787 https://www.encodeproject.org/files/ENCFF502GET/@@download/ENCFF502GET.bigWig GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF665EKI bigWig signal p-value ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF142OZB, ENCFF777NWU, ENCFF857MFM 612914594 ENCODE Processing Pipeline 757b774548cec1c2771a56050e2287c5 https://www.encodeproject.org/files/ENCFF665EKI/@@download/ENCFF665EKI.bigWig GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF331NAZ bigWig fold change over control ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF777NWU, ENCFF857MFM, ENCFF912PMA 402476726 ENCODE Processing Pipeline 7a8d5da8ae898f92b01a9a96d17f593a https://www.encodeproject.org/files/ENCFF331NAZ/@@download/ENCFF331NAZ.bigWig GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF793DIT bigWig signal p-value ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF142OZB, ENCFF777NWU, ENCFF857MFM, ENCFF912PMA 812716440 ENCODE Processing Pipeline 4d3369a20ede5a300ed075c1ae6170e2 https://www.encodeproject.org/files/ENCFF793DIT/@@download/ENCFF793DIT.bigWig GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF961VDA bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF142OZB, ENCFF777NWU, ENCFF857MFM 5290229 ENCODE Processing Pipeline 9e5045ce5253cd8e706931632e0467e2 https://www.encodeproject.org/files/ENCFF961VDA/@@download/ENCFF961VDA.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF296JDB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF047UIF 1330574 ENCODE Processing Pipeline ca98bbc24a7715405eb02d441c0b71c8 https://www.encodeproject.org/files/ENCFF296JDB/@@download/ENCFF296JDB.bigBed GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF221XZD bigWig fold change over control ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF142OZB, ENCFF777NWU, ENCFF857MFM, ENCFF912PMA 777558235 ENCODE Processing Pipeline 7cdc40a470d0b4ab6c41212ab734463f https://www.encodeproject.org/files/ENCFF221XZD/@@download/ENCFF221XZD.bigWig GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF696GSE bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF777NWU, ENCFF857MFM, ENCFF912PMA 5143776 ENCODE Processing Pipeline 2c12fb04f3de7719645cae01550d6289 https://www.encodeproject.org/files/ENCFF696GSE/@@download/ENCFF696GSE.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF355LOK bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF696GSE 11472539 ENCODE Processing Pipeline b1f8d96e0855590391b5fafb87f7a8e6 https://www.encodeproject.org/files/ENCFF355LOK/@@download/ENCFF355LOK.bigBed GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF466LVP bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF128EAB 11842137 ENCODE Processing Pipeline 36798f726f04f60968e92dbf3774a40d https://www.encodeproject.org/files/ENCFF466LVP/@@download/ENCFF466LVP.bigBed GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF047UIF bed narrowPeak optimal idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF128EAB, ENCFF419RSJ, ENCFF696GSE, ENCFF961VDA 787045 ENCODE Processing Pipeline fe71ace29b54685cc2d4d09eeac2ab50 https://www.encodeproject.org/files/ENCFF047UIF/@@download/ENCFF047UIF.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF128EAB bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF142OZB, ENCFF777NWU, ENCFF857MFM, ENCFF912PMA 6266640 ENCODE Processing Pipeline 65e21d392ce1277173ee53379b778b44 https://www.encodeproject.org/files/ENCFF128EAB/@@download/ENCFF128EAB.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF665VJJ bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF961VDA 11512619 ENCODE Processing Pipeline 8c73407db649c4727dd5448950eab6d1 https://www.encodeproject.org/files/ENCFF665VJJ/@@download/ENCFF665VJJ.bigBed GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF855UMP bed narrowPeak conservative idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF128EAB, ENCFF419RSJ, ENCFF696GSE, ENCFF961VDA 737154 ENCODE Processing Pipeline e40f57006dbd7babf76cfdefb399e6e7 https://www.encodeproject.org/files/ENCFF855UMP/@@download/ENCFF855UMP.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF854DHZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF855UMP 1263119 ENCODE Processing Pipeline 38d2c30c93888636beb075654db4363d https://www.encodeproject.org/files/ENCFF854DHZ/@@download/ENCFF854DHZ.bigBed GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF029LKI bigWig signal p-value ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF940YYO 553372905 ENCODE Processing Pipeline ab1dc72c083f3c1cf8cbcc84135437c1 https://www.encodeproject.org/files/ENCFF029LKI/@@download/ENCFF029LKI.bigWig hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF071GAZ bigWig fold change over control ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF940YYO 526166863 ENCODE Processing Pipeline 9f6647a9c32083b99447b50112be7221 https://www.encodeproject.org/files/ENCFF071GAZ/@@download/ENCFF071GAZ.bigWig hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF280WJN bigWig signal p-value ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF 652085392 ENCODE Processing Pipeline 2fb688f72c7ecd8538be490467c2d60b https://www.encodeproject.org/files/ENCFF280WJN/@@download/ENCFF280WJN.bigWig hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF456DQD bigWig signal p-value ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF, ENCFF940YYO 811758443 ENCODE Processing Pipeline 0a3e0a759bc7a0994fc68834cb4a3fd7 https://www.encodeproject.org/files/ENCFF456DQD/@@download/ENCFF456DQD.bigWig hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF332LFS bigWig fold change over control ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF 406069287 ENCODE Processing Pipeline 9b774ae7a6efa1ec0493e4d427a58794 https://www.encodeproject.org/files/ENCFF332LFS/@@download/ENCFF332LFS.bigWig hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF144UXP bigWig fold change over control ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF, ENCFF940YYO 779608807 ENCODE Processing Pipeline 0fbf2445a25bc4051e7356ba629c2518 https://www.encodeproject.org/files/ENCFF144UXP/@@download/ENCFF144UXP.bigWig hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF710XFQ bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF940YYO 5309170 ENCODE Processing Pipeline 54d39b84761cf7691a278da6724e3ac0 https://www.encodeproject.org/files/ENCFF710XFQ/@@download/ENCFF710XFQ.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF694VSV bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF 5134148 ENCODE Processing Pipeline 5d843acff237a4ed39f9e362e90560ab https://www.encodeproject.org/files/ENCFF694VSV/@@download/ENCFF694VSV.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF488XZE bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF, ENCFF940YYO 6351197 ENCODE Processing Pipeline 5d7d7459ce9eedf129bbc5deafe3598d https://www.encodeproject.org/files/ENCFF488XZE/@@download/ENCFF488XZE.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF666VDN bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710XFQ 11532747 ENCODE Processing Pipeline 1cb31581c74052f9bc61bbf6863f11b1 https://www.encodeproject.org/files/ENCFF666VDN/@@download/ENCFF666VDN.bigBed hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF400IZE bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF694VSV 11455138 ENCODE Processing Pipeline a6d782eb0792f4357365ceff820cd10b https://www.encodeproject.org/files/ENCFF400IZE/@@download/ENCFF400IZE.bigBed hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF024MII bigBed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF488XZE 11925819 ENCODE Processing Pipeline 277bb87471b3dc78ae9ff0463679844b https://www.encodeproject.org/files/ENCFF024MII/@@download/ENCFF024MII.bigBed hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF610SCZ bed narrowPeak conservative idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF488XZE, ENCFF694VSV, ENCFF710XFQ 769808 ENCODE Processing Pipeline 315fb2c0115e75c384e2c1512789dd37 https://www.encodeproject.org/files/ENCFF610SCZ/@@download/ENCFF610SCZ.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF053YNV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF610SCZ 1300732 ENCODE Processing Pipeline a7d54e08bd978db30f0ed2cfc431da85 https://www.encodeproject.org/files/ENCFF053YNV/@@download/ENCFF053YNV.bigBed hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF243NQJ bed narrowPeak optimal idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF488XZE, ENCFF694VSV, ENCFF710XFQ 820421 ENCODE Processing Pipeline eba9d012ffcc64edd76e443df53f3662 https://www.encodeproject.org/files/ENCFF243NQJ/@@download/ENCFF243NQJ.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF314PPS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF243NQJ 1367621 ENCODE Processing Pipeline e73c55529b9406808cfb2edaefdcf9c7 https://www.encodeproject.org/files/ENCFF314PPS/@@download/ENCFF314PPS.bigBed hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OVO bam alignments ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OWA 786797193 Richard Myers, HAIB 55e5861ac006191ddf0c597985c35f7c https://www.encodeproject.org/files/ENCFF000OVO/@@download/ENCFF000OVO.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000OVQ bigBed broadPeak peaks ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UCY 874351 Richard Myers, HAIB 951fd6bf4fb70064c0438ff149ad1974 https://www.encodeproject.org/files/ENCFF000OVQ/@@download/ENCFF000OVQ.bigBed hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000OVR bigBed broadPeak peaks ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UCZ 749583 Richard Myers, HAIB 5f17db932a3681f3503cd3b27c726461 https://www.encodeproject.org/files/ENCFF000OVR/@@download/ENCFF000OVR.bigBed hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000OVS bam alignments ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OWD 1365362996 Richard Myers, HAIB 26aca4e492a542e86f7f910a87c35a56 https://www.encodeproject.org/files/ENCFF000OVS/@@download/ENCFF000OVS.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000OVT bigWig raw signal ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 130618033 Richard Myers, HAIB b4bdd3053bd5575a27abaa5901fcb560 https://www.encodeproject.org/files/ENCFF000OVT/@@download/ENCFF000OVT.bigWig hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample, missing derived_from ENCFF000OVU bigWig raw signal ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 236592945 Richard Myers, HAIB b3e15e4f519cb39c1f5d33efd258ce83 https://www.encodeproject.org/files/ENCFF000OVU/@@download/ENCFF000OVU.bigWig hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF000OWA fastq reads ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 36 single-ended 755258854 Richard Myers, HAIB 269a89f7e4bf411ef5b62e7b98681f73 https://www.encodeproject.org/files/ENCFF000OWA/@@download/ENCFF000OWA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSS/ released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000OWD fastq reads ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1355338308 Richard Myers, HAIB 21f378a67ed9aac71dffbe88c78c9853 https://www.encodeproject.org/files/ENCFF000OWD/@@download/ENCFF000OWD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OSS/ released low read length, inconsistent control read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF001UCY bed broadPeak peaks ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 517380 Richard Myers, HAIB ea3098c01118d20bf8265c94659efc4d https://www.encodeproject.org/files/ENCFF001UCY/@@download/ENCFF001UCY.bed.gz hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample ENCFF001UCZ bed broadPeak peaks ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 419220 Richard Myers, HAIB f62daa61812d20573f7721d00a1adabd https://www.encodeproject.org/files/ENCFF001UCZ/@@download/ENCFF001UCZ.bed.gz hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample, missing derived_from ENCFF002CJR bed narrowPeak optimal idr thresholded peaks ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 409026 ENCODE Consortium Analysis Working Group c852448911067252d6b3be1e7ea922d5 https://www.encodeproject.org/files/ENCFF002CJR/@@download/ENCFF002CJR.bed.gz hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample, missing derived_from ENCFF216XPT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE ENCFF002CJR 781945 ENCODE Consortium b69d6daa0224dfb337ad412d22dbe6ba https://www.encodeproject.org/files/ENCFF216XPT/@@download/ENCFF216XPT.bigBed hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000ZSK bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VRD 174913 Michael Snyder, Stanford 0f6f1a584698700c0eac2fc8a3d124d1 https://www.encodeproject.org/files/ENCFF000ZSK/@@download/ENCFF000ZSK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZSL fastq reads ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1083948878 Michael Snyder, Stanford 7bbc4f8533cde42be10888c484992feb https://www.encodeproject.org/files/ENCFF000ZSL/@@download/ENCFF000ZSL.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQO/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZSN fastq reads ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1088867878 Michael Snyder, Stanford 1fd5cbc64d37795635cb2a0934359a53 https://www.encodeproject.org/files/ENCFF000ZSN/@@download/ENCFF000ZSN.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZSO bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 1 586554743 Michael Snyder, Stanford fd61ac8e762a9f906b673355c1b12a23 https://www.encodeproject.org/files/ENCFF000ZSO/@@download/ENCFF000ZSO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZSQ bigWig signal ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 660564356 Michael Snyder, Stanford b860fade11aa43c79162022413ed6e15 https://www.encodeproject.org/files/ENCFF000ZSQ/@@download/ENCFF000ZSQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZSZ bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 1 1382354216 Michael Snyder, Stanford 9c9c00cd506e48c49ddffc6bd5c94b44 https://www.encodeproject.org/files/ENCFF000ZSZ/@@download/ENCFF000ZSZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VRD bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 66859 Michael Snyder, Stanford 00145ea8484e7a08b7a0aef8da595d6f https://www.encodeproject.org/files/ENCFF001VRD/@@download/ENCFF001VRD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF879RUC bam unfiltered alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSL, ENCFF643CGH 1221305172 ENCODE Processing Pipeline 2a25612f0b9614e6077a631f4a57d0c2 https://www.encodeproject.org/files/ENCFF879RUC/@@download/ENCFF879RUC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF154YWN bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSL, ENCFF643CGH 791517832 ENCODE Processing Pipeline 073b0a1daaea664f66b11bbe27949b31 https://www.encodeproject.org/files/ENCFF154YWN/@@download/ENCFF154YWN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF272BVY bam unfiltered alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSN, ENCFF643CGH 1374996330 ENCODE Processing Pipeline 59ddee7b2875850ae54204fb300d0ea6 https://www.encodeproject.org/files/ENCFF272BVY/@@download/ENCFF272BVY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF634AOY bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSN, ENCFF643CGH 946707855 ENCODE Processing Pipeline 5d2a203956f88a04d7772f830cd85bf4 https://www.encodeproject.org/files/ENCFF634AOY/@@download/ENCFF634AOY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF939AIW bam unfiltered alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSL, ENCFF807MUK 1216486118 ENCODE Processing Pipeline de5ca467bfc6e3de05e83f1a57ef2a74 https://www.encodeproject.org/files/ENCFF939AIW/@@download/ENCFF939AIW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF476EIQ bam unfiltered alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSN, ENCFF807MUK 1369813914 ENCODE Processing Pipeline 62f9ba00b94572a6e3af4fc5f0153c34 https://www.encodeproject.org/files/ENCFF476EIQ/@@download/ENCFF476EIQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF588TSB bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSL, ENCFF807MUK 791803153 ENCODE Processing Pipeline bc65059bbfe39b828a704ce957e1a33b https://www.encodeproject.org/files/ENCFF588TSB/@@download/ENCFF588TSB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF784AUK bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSN, ENCFF807MUK 946964664 ENCODE Processing Pipeline 8cf037ad731bd724985e764b6c497a6c https://www.encodeproject.org/files/ENCFF784AUK/@@download/ENCFF784AUK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF154XYI bigWig signal p-value ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF154YWN, ENCFF282PXC, ENCFF634AOY 627650917 ENCODE Processing Pipeline b8ccd14943cf51b6ef7236b2ac8cc42a https://www.encodeproject.org/files/ENCFF154XYI/@@download/ENCFF154XYI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF592TST bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF634AOY 5328234 ENCODE Processing Pipeline ed5977f94839006b2365c225049b2242 https://www.encodeproject.org/files/ENCFF592TST/@@download/ENCFF592TST.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848BQM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF773HOI 326323 ENCODE Processing Pipeline c1981b2a751ff300cc2603b06e088167 https://www.encodeproject.org/files/ENCFF848BQM/@@download/ENCFF848BQM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF111QVD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF502JJJ 356282 ENCODE Processing Pipeline e6483f14ee8b9ab0aa306822a8ddd86a https://www.encodeproject.org/files/ENCFF111QVD/@@download/ENCFF111QVD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF992BUS bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF553AYO 13644014 ENCODE Processing Pipeline dfe8dd664822e80c64523a7cf945cf41 https://www.encodeproject.org/files/ENCFF992BUS/@@download/ENCFF992BUS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF773HOI bed narrowPeak conservative idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF553AYO, ENCFF592TST, ENCFF830DPW 140384 ENCODE Processing Pipeline bfb3d4dda21c5244e9fc456d96694bec https://www.encodeproject.org/files/ENCFF773HOI/@@download/ENCFF773HOI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713UIB bigWig signal p-value ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF634AOY 508653956 ENCODE Processing Pipeline ac60f58b144335b798b08555dfad01e7 https://www.encodeproject.org/files/ENCFF713UIB/@@download/ENCFF713UIB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF790HBU bigWig fold change over control ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF154YWN, ENCFF282PXC 432288338 ENCODE Processing Pipeline d934387454c2e30b8a4529f4ec4fe548 https://www.encodeproject.org/files/ENCFF790HBU/@@download/ENCFF790HBU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF096WJM bigWig fold change over control ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF634AOY 507618183 ENCODE Processing Pipeline 8eb1e237f0432aa8ad6d94f38a7e5583 https://www.encodeproject.org/files/ENCFF096WJM/@@download/ENCFF096WJM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF376NTC bigWig fold change over control ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF154YWN, ENCFF282PXC, ENCFF634AOY 780924185 ENCODE Processing Pipeline b8c14b781a434362c649871bc7417209 https://www.encodeproject.org/files/ENCFF376NTC/@@download/ENCFF376NTC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF418YHP bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF830DPW 11098310 ENCODE Processing Pipeline 29897e8e476ced2f5c5498b013517000 https://www.encodeproject.org/files/ENCFF418YHP/@@download/ENCFF418YHP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF895JJJ bigWig signal p-value ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF154YWN, ENCFF282PXC 489636042 ENCODE Processing Pipeline 8511f6954b1826734ae981c4d3942438 https://www.encodeproject.org/files/ENCFF895JJJ/@@download/ENCFF895JJJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF830DPW bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF154YWN, ENCFF282PXC 4853603 ENCODE Processing Pipeline 6852d5717934a8e6d2d8af19fcc97719 https://www.encodeproject.org/files/ENCFF830DPW/@@download/ENCFF830DPW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF553AYO bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF154YWN, ENCFF282PXC, ENCFF634AOY 5980627 ENCODE Processing Pipeline fc18b14b8e96bc11e7e4304616d0be28 https://www.encodeproject.org/files/ENCFF553AYO/@@download/ENCFF553AYO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF159TGE bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF592TST 11240313 ENCODE Processing Pipeline 1cdf50316ee650495047d58dc75e77c6 https://www.encodeproject.org/files/ENCFF159TGE/@@download/ENCFF159TGE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF502JJJ bed narrowPeak optimal idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF553AYO, ENCFF592TST, ENCFF830DPW 160079 ENCODE Processing Pipeline 4f658ff65b757285d58967c273ac05b8 https://www.encodeproject.org/files/ENCFF502JJJ/@@download/ENCFF502JJJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF010MZO bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF668SRV 11242119 ENCODE Processing Pipeline acf3d19fd3c05d6df1f85d48daa6ba17 https://www.encodeproject.org/files/ENCFF010MZO/@@download/ENCFF010MZO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF970LYD bed narrowPeak conservative idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF668SRV, ENCFF695DKI, ENCFF860WKG 139796 ENCODE Processing Pipeline 87c529c1cb85d758baca106dcf7b5db6 https://www.encodeproject.org/files/ENCFF970LYD/@@download/ENCFF970LYD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145JVY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF970LYD 325639 ENCODE Processing Pipeline c752ee5fe60006e268fcb8630284a2a5 https://www.encodeproject.org/files/ENCFF145JVY/@@download/ENCFF145JVY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF967DQA bigWig signal p-value ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF784AUK 470778009 ENCODE Processing Pipeline fb5bab50a25ab6509643e0a4007e11ce https://www.encodeproject.org/files/ENCFF967DQA/@@download/ENCFF967DQA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF695DKI bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP, ENCFF784AUK 5982429 ENCODE Processing Pipeline 73ed0542bd5229d4ceb4d2a266956991 https://www.encodeproject.org/files/ENCFF695DKI/@@download/ENCFF695DKI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF295SKL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF849EEH 353982 ENCODE Processing Pipeline e8dfbf93ddf5b4726edd50ab3f0274a5 https://www.encodeproject.org/files/ENCFF295SKL/@@download/ENCFF295SKL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF638SEN bigWig signal p-value ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP 486009247 ENCODE Processing Pipeline 041df35c1c85ede63235736009a4ca48 https://www.encodeproject.org/files/ENCFF638SEN/@@download/ENCFF638SEN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF468QWN bigWig fold change over control ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP 433578973 ENCODE Processing Pipeline 06bda5b3318f660e3c3b65300aa8c0c5 https://www.encodeproject.org/files/ENCFF468QWN/@@download/ENCFF468QWN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296PPG bigWig signal p-value ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP, ENCFF784AUK 628007494 ENCODE Processing Pipeline ed062fb0f85f97ed8b43ca3c5e23622f https://www.encodeproject.org/files/ENCFF296PPG/@@download/ENCFF296PPG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF321DKX bigWig fold change over control ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF784AUK 506911353 ENCODE Processing Pipeline 546d2f0422045c5423862350ee8ce025 https://www.encodeproject.org/files/ENCFF321DKX/@@download/ENCFF321DKX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF454CPT bigWig fold change over control ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP, ENCFF784AUK 778917870 ENCODE Processing Pipeline 8a3b1d50456654454a3398f2bc30cbff https://www.encodeproject.org/files/ENCFF454CPT/@@download/ENCFF454CPT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF860WKG bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP 4816074 ENCODE Processing Pipeline 7cc8a27661ac10afd22f18914a6e9f71 https://www.encodeproject.org/files/ENCFF860WKG/@@download/ENCFF860WKG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF668SRV bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF784AUK 5328556 ENCODE Processing Pipeline 22cb5e7ce3fb5be08497bc1699eeb5bc https://www.encodeproject.org/files/ENCFF668SRV/@@download/ENCFF668SRV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF141RXK bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF860WKG 11060285 ENCODE Processing Pipeline d4d38df872dbe5650f54251816b2c378 https://www.encodeproject.org/files/ENCFF141RXK/@@download/ENCFF141RXK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF207FYD bigBed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF695DKI 13640325 ENCODE Processing Pipeline c1f1a1a83822d473961b34a20a5565cb https://www.encodeproject.org/files/ENCFF207FYD/@@download/ENCFF207FYD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF849EEH bed narrowPeak optimal idr thresholded peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF668SRV, ENCFF695DKI, ENCFF860WKG 158174 ENCODE Processing Pipeline 37f5f64bc9fc3481a401537dd3e2b6f8 https://www.encodeproject.org/files/ENCFF849EEH/@@download/ENCFF849EEH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803CMG fastq reads ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF311EXW 2159053937 Michael Snyder, Stanford e784d89d481ef8a9ac4f97a993793d58 SRA:SRR6214153 https://www.encodeproject.org/files/ENCFF803CMG/@@download/ENCFF803CMG.fastq.gz Illumina HiSeq 4000 /files/ENCFF639MIH/ released antibody characterized with exemption ENCFF311EXW fastq reads ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF803CMG 2424835811 Michael Snyder, Stanford 3dde57ec1f28a89f1446feba666f22f5 SRA:SRR6214153 https://www.encodeproject.org/files/ENCFF311EXW/@@download/ENCFF311EXW.fastq.gz Illumina HiSeq 4000 /files/ENCFF633TME/ released antibody characterized with exemption ENCFF726MTX bam unfiltered alignments ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF311EXW, ENCFF803CMG, ENCFF807MUK 4512358928 ENCODE Processing Pipeline 37a2dc5ed193e03f93f7b042bbac183e https://www.encodeproject.org/files/ENCFF726MTX/@@download/ENCFF726MTX.bam hg19 released antibody characterized with exemption ENCFF960PUX bam unfiltered alignments ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF311EXW, ENCFF643CGH, ENCFF803CMG 4518942267 ENCODE Processing Pipeline 43f72cbaab3a7bd34e6585941dc2b996 https://www.encodeproject.org/files/ENCFF960PUX/@@download/ENCFF960PUX.bam GRCh38 released antibody characterized with exemption ENCFF703ZWI bam alignments ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF311EXW, ENCFF643CGH, ENCFF803CMG 3707748864 ENCODE Processing Pipeline bc7d7f1ae77ae17ed9424fc07ad85bdf https://www.encodeproject.org/files/ENCFF703ZWI/@@download/ENCFF703ZWI.bam GRCh38 released antibody characterized with exemption ENCFF158YVQ bam alignments ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF311EXW, ENCFF803CMG, ENCFF807MUK 3705335722 ENCODE Processing Pipeline fb50f25166391efc93736e640ac292df https://www.encodeproject.org/files/ENCFF158YVQ/@@download/ENCFF158YVQ.bam hg19 released antibody characterized with exemption ENCFF036DJB bigWig signal p-value ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF158YVQ, ENCFF664ITJ 1012772002 ENCODE Processing Pipeline 6c932b7c27dc2515cdf965cc6aad101c https://www.encodeproject.org/files/ENCFF036DJB/@@download/ENCFF036DJB.bigWig hg19 released antibody characterized with exemption ENCFF405ZPL bigWig fold change over control ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF158YVQ, ENCFF664ITJ 1213604909 ENCODE Processing Pipeline 681c5765aeea3f2a6093f850deaaa2c0 https://www.encodeproject.org/files/ENCFF405ZPL/@@download/ENCFF405ZPL.bigWig hg19 released antibody characterized with exemption ENCFF088SYH bed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF158YVQ, ENCFF664ITJ 6629904 ENCODE Processing Pipeline 6561cc38e9ca79c1de0d331b5f8fce18 https://www.encodeproject.org/files/ENCFF088SYH/@@download/ENCFF088SYH.bed.gz hg19 released antibody characterized with exemption ENCFF544XZU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF088SYH 695378 ENCODE Processing Pipeline cff62d9a0bc723ace8b5022252329a64 https://www.encodeproject.org/files/ENCFF544XZU/@@download/ENCFF544XZU.bed.gz hg19 released antibody characterized with exemption ENCFF922AXE bigBed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF088SYH 13934052 ENCODE Processing Pipeline 3a1d85ae2c70f18cb354ffe35ac5beee https://www.encodeproject.org/files/ENCFF922AXE/@@download/ENCFF922AXE.bigBed hg19 released antibody characterized with exemption ENCFF996XCF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF544XZU 1182388 ENCODE Processing Pipeline 7b7b0b76299a61b00140da286289f3f6 https://www.encodeproject.org/files/ENCFF996XCF/@@download/ENCFF996XCF.bigBed hg19 released antibody characterized with exemption ENCFF817YDQ bed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF696CNP, ENCFF703ZWI 6594639 ENCODE Processing Pipeline 134b0364f2667578bf917634ac4762a1 https://www.encodeproject.org/files/ENCFF817YDQ/@@download/ENCFF817YDQ.bed.gz GRCh38 released antibody characterized with exemption ENCFF532UZD bigBed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF817YDQ 13903197 ENCODE Processing Pipeline a78f586dc6913e00eed9a0a55eb907bf https://www.encodeproject.org/files/ENCFF532UZD/@@download/ENCFF532UZD.bigBed GRCh38 released antibody characterized with exemption ENCFF022MCG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF749CMN 1162544 ENCODE Processing Pipeline da44fa1d38f625d0e286d7da1006dbbc https://www.encodeproject.org/files/ENCFF022MCG/@@download/ENCFF022MCG.bigBed GRCh38 released antibody characterized with exemption ENCFF657ZMO bigWig signal p-value ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF696CNP, ENCFF703ZWI 1144275749 ENCODE Processing Pipeline 7021fd7e3dad258d6fc7ba1cfdec7afe https://www.encodeproject.org/files/ENCFF657ZMO/@@download/ENCFF657ZMO.bigWig GRCh38 released antibody characterized with exemption ENCFF283YML bigWig fold change over control ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF696CNP, ENCFF703ZWI 1213958220 ENCODE Processing Pipeline 5d799d7665f87acd70b2a0bee1e63fdf https://www.encodeproject.org/files/ENCFF283YML/@@download/ENCFF283YML.bigWig GRCh38 released antibody characterized with exemption ENCFF749CMN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF817YDQ 680045 ENCODE Processing Pipeline 8d0d2b5879f9457ae314fc1cc797aa90 https://www.encodeproject.org/files/ENCFF749CMN/@@download/ENCFF749CMN.bed.gz GRCh38 released antibody characterized with exemption ENCFF000ZCB bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZCP 491193781 Peggy Farnham, USC 4392262c7850b2b8ab020782f78a1aec https://www.encodeproject.org/files/ENCFF000ZCB/@@download/ENCFF000ZCB.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZCC bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZDC 621445492 Peggy Farnham, USC 43cfb5dcddf113bf18d4d40eb036e95f https://www.encodeproject.org/files/ENCFF000ZCC/@@download/ENCFF000ZCC.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZCD bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPE 102317 Peggy Farnham, USC 2e3381f6ab48a7e40c97ca7399b43e3c https://www.encodeproject.org/files/ENCFF000ZCD/@@download/ENCFF000ZCD.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZCE bigWig signal ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 330506045 Peggy Farnham, USC 35f7060dede50924224d03691574ae2d https://www.encodeproject.org/files/ENCFF000ZCE/@@download/ENCFF000ZCE.bigWig hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000ZCP fastq reads ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 377585977 Peggy Farnham, USC 6c3f75ff2dbf173f64a5ee9f8efd5aa0 https://www.encodeproject.org/files/ENCFF000ZCP/@@download/ENCFF000ZCP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZDC fastq reads ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 487182554 Peggy Farnham, USC 8d9de23593dee93a54874668428a7f37 https://www.encodeproject.org/files/ENCFF000ZDC/@@download/ENCFF000ZDC.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VPE bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 9304 Peggy Farnham, USC d77f4e16aa46dd3955b05e97b773c8d5 https://www.encodeproject.org/files/ENCFF001VPE/@@download/ENCFF001VPE.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CYM bed narrowPeak optimal idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 15862 ENCODE Consortium Analysis Working Group 60ccba98270606ef6d27ffb5aff33ce6 https://www.encodeproject.org/files/ENCFF002CYM/@@download/ENCFF002CYM.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF157YGH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYM 127846 ENCODE Consortium 406286d5ee7c608d6052c87551e903ab https://www.encodeproject.org/files/ENCFF157YGH/@@download/ENCFF157YGH.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF771NSF bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZDC, ENCFF643CGH 276186923 ENCODE Processing Pipeline 7101ac688edca5349b6ca3cd98d035fc https://www.encodeproject.org/files/ENCFF771NSF/@@download/ENCFF771NSF.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF836CBA bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF138LHR 4028189 ENCODE Processing Pipeline 1168de6ea55376bfd4e96fb8610d0b3c https://www.encodeproject.org/files/ENCFF836CBA/@@download/ENCFF836CBA.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF914QSN bed narrowPeak conservative idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF138LHR, ENCFF159OAW, ENCFF419RSJ, ENCFF430YGK 10512 ENCODE Processing Pipeline c4cab48a77ea7400e5c310736feda32b https://www.encodeproject.org/files/ENCFF914QSN/@@download/ENCFF914QSN.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF048YNL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF914QSN 63255 ENCODE Processing Pipeline 02da6600e6c3c1e8368086d608199351 https://www.encodeproject.org/files/ENCFF048YNL/@@download/ENCFF048YNL.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF955CIQ bam unfiltered alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZDC, ENCFF643CGH 624504813 ENCODE Processing Pipeline 6f36331b3d89f6763ae06f5305acdaff https://www.encodeproject.org/files/ENCFF955CIQ/@@download/ENCFF955CIQ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF169IGD bam unfiltered alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZCP, ENCFF643CGH 493416394 ENCODE Processing Pipeline d6153c9519719413bd48d83eafdf3003 https://www.encodeproject.org/files/ENCFF169IGD/@@download/ENCFF169IGD.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF078BWN bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZCP, ENCFF643CGH 239450590 ENCODE Processing Pipeline 701a81562fdb64bdf083a38fa9d08777 https://www.encodeproject.org/files/ENCFF078BWN/@@download/ENCFF078BWN.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF190EUO bigWig signal p-value ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF078BWN, ENCFF355SGP 402045125 ENCODE Processing Pipeline e800af5993d99b93d19b16d7ade07307 https://www.encodeproject.org/files/ENCFF190EUO/@@download/ENCFF190EUO.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF718PRW bigWig fold change over control ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF078BWN, ENCFF355SGP 164552980 ENCODE Processing Pipeline 83d5da3c9d838d1e10efd98eb79765f4 https://www.encodeproject.org/files/ENCFF718PRW/@@download/ENCFF718PRW.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF159OAW bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF771NSF 2585711 ENCODE Processing Pipeline df28e61422fb6d868113790c8cb29777 https://www.encodeproject.org/files/ENCFF159OAW/@@download/ENCFF159OAW.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF430YGK bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078BWN, ENCFF355SGP, ENCFF771NSF 4295731 ENCODE Processing Pipeline 3e8b8deb2340ca0dfbbc0b36bed49b62 https://www.encodeproject.org/files/ENCFF430YGK/@@download/ENCFF430YGK.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF188DNO bigWig signal p-value ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078BWN, ENCFF355SGP, ENCFF771NSF 425534308 ENCODE Processing Pipeline 429b1ea30a2852239589e2b97d8d6b43 https://www.encodeproject.org/files/ENCFF188DNO/@@download/ENCFF188DNO.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF316NLV bigWig fold change over control ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF771NSF 177543303 ENCODE Processing Pipeline f61530c7a8a48e42df582b5f9e50aa6c https://www.encodeproject.org/files/ENCFF316NLV/@@download/ENCFF316NLV.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF893JAF bigWig fold change over control ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF078BWN, ENCFF355SGP, ENCFF771NSF 308438163 ENCODE Processing Pipeline 624231284bfdb622fee8fb672cb25b98 https://www.encodeproject.org/files/ENCFF893JAF/@@download/ENCFF893JAF.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF527VPC bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF159OAW 5488015 ENCODE Processing Pipeline d667f5659e68510a23ca297fbd2ecd8c https://www.encodeproject.org/files/ENCFF527VPC/@@download/ENCFF527VPC.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF658YZW bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF430YGK 10687369 ENCODE Processing Pipeline 26ace7b8b39609b115b50f424f4ede54 https://www.encodeproject.org/files/ENCFF658YZW/@@download/ENCFF658YZW.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF791ZPU bed narrowPeak optimal idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF138LHR, ENCFF159OAW, ENCFF419RSJ, ENCFF430YGK 10865 ENCODE Processing Pipeline 2c06d5202c81ec20cb1b5e46ae39d730 https://www.encodeproject.org/files/ENCFF791ZPU/@@download/ENCFF791ZPU.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF419MGD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF791ZPU 64003 ENCODE Processing Pipeline 7eb6bc4e71c5e46d859f401cdcb1b886 https://www.encodeproject.org/files/ENCFF419MGD/@@download/ENCFF419MGD.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF182QQL bigWig signal p-value ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF771NSF 410624541 ENCODE Processing Pipeline f25eeed1bbd8a55c65b82a50cee951f5 https://www.encodeproject.org/files/ENCFF182QQL/@@download/ENCFF182QQL.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF138LHR bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF078BWN, ENCFF355SGP 1792003 ENCODE Processing Pipeline 1bfca16ba2cbb0b0b7504dfbcf6046a6 https://www.encodeproject.org/files/ENCFF138LHR/@@download/ENCFF138LHR.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF205OOU bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZDC, ENCFF807MUK 276428613 ENCODE Processing Pipeline 0826876933f2a6d5831c62e5a880592d https://www.encodeproject.org/files/ENCFF205OOU/@@download/ENCFF205OOU.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF803BPM bigWig signal p-value ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF205OOU 339686008 ENCODE Processing Pipeline 160d2b80f0b7ce3b7d549ac858e616a6 https://www.encodeproject.org/files/ENCFF803BPM/@@download/ENCFF803BPM.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF925UIZ bam unfiltered alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZDC, ENCFF807MUK 622359755 ENCODE Processing Pipeline 55a5550b7b560f5fc8d7a951413ffc43 https://www.encodeproject.org/files/ENCFF925UIZ/@@download/ENCFF925UIZ.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF589YXX bam unfiltered alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZCP, ENCFF807MUK 491839879 ENCODE Processing Pipeline ef6a082af72748322bc3cc806865783d https://www.encodeproject.org/files/ENCFF589YXX/@@download/ENCFF589YXX.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF396QHD bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZCP, ENCFF807MUK 239650181 ENCODE Processing Pipeline 114105c7389071e71379f5728d9e1489 https://www.encodeproject.org/files/ENCFF396QHD/@@download/ENCFF396QHD.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF369MDA bigWig signal p-value ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF396QHD 399427952 ENCODE Processing Pipeline 1365cec7973c7a465c3c70aa276c5d6d https://www.encodeproject.org/files/ENCFF369MDA/@@download/ENCFF369MDA.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF660ATE bigWig fold change over control ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF205OOU 179666149 ENCODE Processing Pipeline 16b29eb59b53778ee9f4e02039cd941c https://www.encodeproject.org/files/ENCFF660ATE/@@download/ENCFF660ATE.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF342EJU bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF396QHD 1846008 ENCODE Processing Pipeline 2204adb7de4c87af2ca746cd3217546a https://www.encodeproject.org/files/ENCFF342EJU/@@download/ENCFF342EJU.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF883FFE bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF342EJU 4022383 ENCODE Processing Pipeline 47bcc7fe00fa1450de796435662b4cb8 https://www.encodeproject.org/files/ENCFF883FFE/@@download/ENCFF883FFE.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF230UMV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF541SHT 63248 ENCODE Processing Pipeline 065a1b4aea2bc2a33d790be0399dbe35 https://www.encodeproject.org/files/ENCFF230UMV/@@download/ENCFF230UMV.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF594LCH bed narrowPeak optimal idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF342EJU, ENCFF837CQV, ENCFF841ZNM 11703 ENCODE Processing Pipeline b644a99d8801abfd2155e186effd31ba https://www.encodeproject.org/files/ENCFF594LCH/@@download/ENCFF594LCH.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF904KAX bigWig signal p-value ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF205OOU, ENCFF396QHD 410695310 ENCODE Processing Pipeline 0257ab3a48d6fc325353bce4ee4c8a8b https://www.encodeproject.org/files/ENCFF904KAX/@@download/ENCFF904KAX.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF111SYN bigWig fold change over control ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF396QHD 171759997 ENCODE Processing Pipeline a4937ef2e7053346c93a54929f32b376 https://www.encodeproject.org/files/ENCFF111SYN/@@download/ENCFF111SYN.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF837CQV bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF205OOU 2577171 ENCODE Processing Pipeline 22d2b8db8c9b6fb4ede4fec6f30d96fd https://www.encodeproject.org/files/ENCFF837CQV/@@download/ENCFF837CQV.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF573HAI bigWig fold change over control ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF205OOU, ENCFF396QHD 321925583 ENCODE Processing Pipeline c0db841ca852260b2885de1fb7ddd8b5 https://www.encodeproject.org/files/ENCFF573HAI/@@download/ENCFF573HAI.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF841ZNM bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF205OOU, ENCFF396QHD 4367294 ENCODE Processing Pipeline 2908d011585f5d2341ef66972d32ad91 https://www.encodeproject.org/files/ENCFF841ZNM/@@download/ENCFF841ZNM.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF704ZUN bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF841ZNM 10728547 ENCODE Processing Pipeline e8fd7f1f763d59fdb62b8647ae19217f https://www.encodeproject.org/files/ENCFF704ZUN/@@download/ENCFF704ZUN.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF614DHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF594LCH 63944 ENCODE Processing Pipeline 9c42e1dd0c97f98c6f487c35d9a4b939 https://www.encodeproject.org/files/ENCFF614DHJ/@@download/ENCFF614DHJ.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF733OGJ bigBed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF837CQV 6716654 ENCODE Processing Pipeline 2888e84bb0b0d67338793a752d37574c https://www.encodeproject.org/files/ENCFF733OGJ/@@download/ENCFF733OGJ.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF541SHT bed narrowPeak conservative idr thresholded peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF342EJU, ENCFF837CQV, ENCFF841ZNM 11181 ENCODE Processing Pipeline 5f0a343e53553ea4b02ff5f49ed75845 https://www.encodeproject.org/files/ENCFF541SHT/@@download/ENCFF541SHT.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF988XKO fastq reads ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1750611032 Richard Myers, HAIB 121bc4ae2311d730afcfc45fa506cc9e SRA:SRR5338867 https://www.encodeproject.org/files/ENCFF988XKO/@@download/ENCFF988XKO.fastq.gz Illumina HiSeq 2000 /files/ENCFF247MLF/ released antibody characterized with exemption biological replicates with identical biosample ENCFF573BXF fastq reads ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 2750549534 Richard Myers, HAIB 887ad2021ba480ceaf27b798403ea293 SRA:SRR5338866 https://www.encodeproject.org/files/ENCFF573BXF/@@download/ENCFF573BXF.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released antibody characterized with exemption biological replicates with identical biosample ENCFF254XNM bam unfiltered alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF988XKO 1958716445 ENCODE Processing Pipeline b70a724807782bf71fb9751e4f651a41 https://www.encodeproject.org/files/ENCFF254XNM/@@download/ENCFF254XNM.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF499VEN bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF988XKO 1443819584 ENCODE Processing Pipeline f300986be2d3dadda8436d7a94a06c58 https://www.encodeproject.org/files/ENCFF499VEN/@@download/ENCFF499VEN.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF272XYT bam unfiltered alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF573BXF, ENCFF643CGH 3019278676 ENCODE Processing Pipeline 04c67a275e4f4c148f9546f1078194f1 https://www.encodeproject.org/files/ENCFF272XYT/@@download/ENCFF272XYT.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF376QOH bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF573BXF, ENCFF643CGH 2218040920 ENCODE Processing Pipeline 7aef350aa89e0eda59662183e99f966c https://www.encodeproject.org/files/ENCFF376QOH/@@download/ENCFF376QOH.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF449MVQ bigWig signal p-value ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF259AXY, ENCFF499VEN 686007419 ENCODE Processing Pipeline 17d1b1c5c325ce3dde4f0a1cabf0791e https://www.encodeproject.org/files/ENCFF449MVQ/@@download/ENCFF449MVQ.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF158JLO bigWig signal p-value ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF259AXY, ENCFF376QOH, ENCFF610PNU 1040035146 ENCODE Processing Pipeline fe939bb6c93b4a4ebead5abf29e8f30f https://www.encodeproject.org/files/ENCFF158JLO/@@download/ENCFF158JLO.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF054PKR bigWig fold change over control ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF259AXY, ENCFF376QOH, ENCFF610PNU 1253574568 ENCODE Processing Pipeline 8b59619179b7259e41347bc00724497e https://www.encodeproject.org/files/ENCFF054PKR/@@download/ENCFF054PKR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF875FYY bigWig signal p-value ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF259AXY, ENCFF376QOH, ENCFF499VEN, ENCFF610PNU 1511819720 ENCODE Processing Pipeline 9ef741f968a335011721bc95cc7976d4 https://www.encodeproject.org/files/ENCFF875FYY/@@download/ENCFF875FYY.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF570FMI bigWig fold change over control ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF259AXY, ENCFF499VEN 746225410 ENCODE Processing Pipeline 7fb089b89bb62ea08fef815c10efefc1 https://www.encodeproject.org/files/ENCFF570FMI/@@download/ENCFF570FMI.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF919WRR bigWig fold change over control ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF259AXY, ENCFF376QOH, ENCFF499VEN, ENCFF610PNU 1660191016 ENCODE Processing Pipeline 0d754422a638e0e8d817a7b2ede81ad0 https://www.encodeproject.org/files/ENCFF919WRR/@@download/ENCFF919WRR.bigWig GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF278BOV bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF259AXY, ENCFF376QOH, ENCFF499VEN, ENCFF610PNU 7091386 ENCODE Processing Pipeline 41713053ca961ef7e486374140e85cfe https://www.encodeproject.org/files/ENCFF278BOV/@@download/ENCFF278BOV.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF165GTT bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF259AXY, ENCFF376QOH, ENCFF610PNU 6549868 ENCODE Processing Pipeline 1cee84719887b8330ecd449709eb2ee6 https://www.encodeproject.org/files/ENCFF165GTT/@@download/ENCFF165GTT.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF619KUC bigBed narrowPeak optimal idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF669BQN 1138261 ENCODE Processing Pipeline aff84722e955907d87bad65546b7d101 https://www.encodeproject.org/files/ENCFF619KUC/@@download/ENCFF619KUC.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF399LBU bigBed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF165GTT 13360532 ENCODE Processing Pipeline db1727db8b0e94a6f14a85a681c24230 https://www.encodeproject.org/files/ENCFF399LBU/@@download/ENCFF399LBU.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF653SGK bigBed narrowPeak conservative idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF457PHY 1024920 ENCODE Processing Pipeline cda0bb8df1d86c7f5cc3525e7e2beae2 https://www.encodeproject.org/files/ENCFF653SGK/@@download/ENCFF653SGK.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF128FYI bigBed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF278BOV 13368378 ENCODE Processing Pipeline 36438933156c84afe46e2056dc51949b https://www.encodeproject.org/files/ENCFF128FYI/@@download/ENCFF128FYI.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF669BQN bed narrowPeak optimal idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF165GTT, ENCFF278BOV, ENCFF419RSJ, ENCFF421FKH 607432 ENCODE Processing Pipeline bde12ac03fcd2de469136193413d0c53 https://www.encodeproject.org/files/ENCFF669BQN/@@download/ENCFF669BQN.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF421FKH bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF259AXY, ENCFF499VEN 6076536 ENCODE Processing Pipeline 0e99f2c788e20b6378c9611a4457bd33 https://www.encodeproject.org/files/ENCFF421FKH/@@download/ENCFF421FKH.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF259QHX bigBed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF421FKH 13286056 ENCODE Processing Pipeline 1a5840e9099412d0fe16c3cb2144ac6b https://www.encodeproject.org/files/ENCFF259QHX/@@download/ENCFF259QHX.bigBed GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF457PHY bed narrowPeak conservative idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF165GTT, ENCFF278BOV, ENCFF419RSJ, ENCFF421FKH 536450 ENCODE Processing Pipeline 63ed914edbcf26e9b4f9db02bcf3e189 https://www.encodeproject.org/files/ENCFF457PHY/@@download/ENCFF457PHY.bed.gz GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF080FII bam unfiltered alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF807MUK, ENCFF988XKO 1948279743 ENCODE Processing Pipeline 439253733ec3f0efabcb2249413f37fe https://www.encodeproject.org/files/ENCFF080FII/@@download/ENCFF080FII.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF549RWC bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF807MUK, ENCFF988XKO 1443671011 ENCODE Processing Pipeline 7b48f6771082b0e18ca54dc1d497be6e https://www.encodeproject.org/files/ENCFF549RWC/@@download/ENCFF549RWC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF840JJL bam unfiltered alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF573BXF, ENCFF807MUK 3001652213 ENCODE Processing Pipeline 535f1b36d0ce0c392b6377fe053471c0 https://www.encodeproject.org/files/ENCFF840JJL/@@download/ENCFF840JJL.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF888UFX bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF573BXF, ENCFF807MUK 2217497099 ENCODE Processing Pipeline 823e831af408ef65665000346fb29e49 https://www.encodeproject.org/files/ENCFF888UFX/@@download/ENCFF888UFX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF639XOK bigWig signal p-value ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF321UJV, ENCFF549RWC, ENCFF871NUZ, ENCFF888UFX 1492667537 ENCODE Processing Pipeline 93ca6ee0bbbd0122088ec0b73a8dfac2 https://www.encodeproject.org/files/ENCFF639XOK/@@download/ENCFF639XOK.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF254DIB bigWig signal p-value ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF549RWC, ENCFF871NUZ 710608877 ENCODE Processing Pipeline aa89e319f4ff2a86d428bc6ebb43f999 https://www.encodeproject.org/files/ENCFF254DIB/@@download/ENCFF254DIB.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF996JVA bigWig signal p-value ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF871NUZ, ENCFF888UFX 1293262536 ENCODE Processing Pipeline 006d1be33652b28681c9114b2f22adc1 https://www.encodeproject.org/files/ENCFF996JVA/@@download/ENCFF996JVA.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF836LVY bigBed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF409TGM 13303665 ENCODE Processing Pipeline d14f938cc1de765cc4b905b1eb67d13d https://www.encodeproject.org/files/ENCFF836LVY/@@download/ENCFF836LVY.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF943VCV bigBed narrowPeak conservative idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF046CGT 996466 ENCODE Processing Pipeline e07c406ac9c54eddc006ea17bd112944 https://www.encodeproject.org/files/ENCFF943VCV/@@download/ENCFF943VCV.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF409TGM bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF321UJV, ENCFF549RWC, ENCFF871NUZ, ENCFF888UFX 7056004 ENCODE Processing Pipeline db38871dab608c5f8df541057aaa0622 https://www.encodeproject.org/files/ENCFF409TGM/@@download/ENCFF409TGM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF897TYA bigWig fold change over control ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF549RWC, ENCFF871NUZ 735699112 ENCODE Processing Pipeline efe22daa95cdbafd83768f4db12304df https://www.encodeproject.org/files/ENCFF897TYA/@@download/ENCFF897TYA.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF773KEV bigWig fold change over control ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF321UJV, ENCFF549RWC, ENCFF871NUZ, ENCFF888UFX 1650045591 ENCODE Processing Pipeline f042c9ac1394923dc2a76477383da6bc https://www.encodeproject.org/files/ENCFF773KEV/@@download/ENCFF773KEV.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF371DUN bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF871NUZ, ENCFF888UFX 6564913 ENCODE Processing Pipeline 6ca81dba4fd491968e30149457f0af5f https://www.encodeproject.org/files/ENCFF371DUN/@@download/ENCFF371DUN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF427LXZ bigWig fold change over control ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF871NUZ, ENCFF888UFX 1265120238 ENCODE Processing Pipeline 3b53d6c6dee7217022c7b53c3d353a83 https://www.encodeproject.org/files/ENCFF427LXZ/@@download/ENCFF427LXZ.bigWig hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF244GBU bigBed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF137BQM 13194535 ENCODE Processing Pipeline 7ab9c27919e9652f0eab5ed2adedb222 https://www.encodeproject.org/files/ENCFF244GBU/@@download/ENCFF244GBU.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF640QNO bigBed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF371DUN 13361138 ENCODE Processing Pipeline 355b302a5536dc0d287b4aa86bfa6cd5 https://www.encodeproject.org/files/ENCFF640QNO/@@download/ENCFF640QNO.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF612TRG bed narrowPeak optimal idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF137BQM, ENCFF371DUN, ENCFF409TGM 593414 ENCODE Processing Pipeline 4f8617bfcdcb64e666fd3bea1450f25e https://www.encodeproject.org/files/ENCFF612TRG/@@download/ENCFF612TRG.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF258FGR bigBed narrowPeak optimal idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF612TRG 1114557 ENCODE Processing Pipeline 7462b54b0225fb34ce1b482bbc57eba4 https://www.encodeproject.org/files/ENCFF258FGR/@@download/ENCFF258FGR.bigBed hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF137BQM bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF549RWC, ENCFF871NUZ 6011079 ENCODE Processing Pipeline b9092bedf104651ae59cc5e1c6395e59 https://www.encodeproject.org/files/ENCFF137BQM/@@download/ENCFF137BQM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF046CGT bed narrowPeak conservative idr thresholded peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF137BQM, ENCFF371DUN, ENCFF409TGM 518694 ENCODE Processing Pipeline 87ea272f67b77a1b9e3cc46a0303d553 https://www.encodeproject.org/files/ENCFF046CGT/@@download/ENCFF046CGT.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF000VRU bam alignments ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VSP 222497763 Michael Snyder, Stanford 214de7cd00dde5a46f0b9fed00157c5c https://www.encodeproject.org/files/ENCFF000VRU/@@download/ENCFF000VRU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VRV bam alignments ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VSO 133271358 Michael Snyder, Stanford 1a9f62dbc91f70d339eba005393476bc https://www.encodeproject.org/files/ENCFF000VRV/@@download/ENCFF000VRV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VRW bigBed narrowPeak peaks ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDV 439512 Michael Snyder, Stanford e0e7be41a68350cf135411e093e4a7bd https://www.encodeproject.org/files/ENCFF000VRW/@@download/ENCFF000VRW.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000VSA bigWig signal ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 145986055 Michael Snyder, Stanford d7ff578729be12fdc2a005b2d1fce064 https://www.encodeproject.org/files/ENCFF000VSA/@@download/ENCFF000VSA.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000VSO fastq reads ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 104528140 Michael Snyder, Stanford e0660d3be0f2d68ca3dc417a718aa332 https://www.encodeproject.org/files/ENCFF000VSO/@@download/ENCFF000VSO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VRO/ released biological replicates with identical biosample insufficient read length ENCFF000VSP fastq reads ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 181001626 Michael Snyder, Stanford ce18d4f035fd315fcec4c2a5feec7618 https://www.encodeproject.org/files/ENCFF000VSP/@@download/ENCFF000VSP.fastq.gz Illumina Genome Analyzer /files/ENCFF000VRQ/ released biological replicates with identical biosample insufficient read length ENCFF001VDV bed narrowPeak peaks ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 185841 Michael Snyder, Stanford ddf0d376e5c674eaa88ffb8e3698a03b https://www.encodeproject.org/files/ENCFF001VDV/@@download/ENCFF001VDV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002COJ bed narrowPeak optimal idr thresholded peaks ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 189558 ENCODE Consortium Analysis Working Group 0cb765f6f19df5ccb6d76a0be9b96989 https://www.encodeproject.org/files/ENCFF002COJ/@@download/ENCFF002COJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF561FSY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COJ 463865 ENCODE Consortium eb77cc556cdfc5277d1ae401b9dc01e9 https://www.encodeproject.org/files/ENCFF561FSY/@@download/ENCFF561FSY.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000OYW bam alignments ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OZI 868474344 Richard Myers, HAIB b3c320463e98406dfb488844265352a9 https://www.encodeproject.org/files/ENCFF000OYW/@@download/ENCFF000OYW.bam hg19 released biological replicates with identical biosample ENCFF000OYX bigBed broadPeak peaks ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDS 215856 Richard Myers, HAIB 3014ab1170ad2132a3636ae15a0b1a69 https://www.encodeproject.org/files/ENCFF000OYX/@@download/ENCFF000OYX.bigBed hg19 released biological replicates with identical biosample ENCFF000OYY bigBed broadPeak peaks ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDT 144000 Richard Myers, HAIB cca4d801300559a157615ed3f6b9c0cb https://www.encodeproject.org/files/ENCFF000OYY/@@download/ENCFF000OYY.bigBed hg19 released biological replicates with identical biosample ENCFF000OZA bam alignments ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZL 1387350071 Richard Myers, HAIB 2e43db74162344950c1ee12ad3983ef8 https://www.encodeproject.org/files/ENCFF000OZA/@@download/ENCFF000OZA.bam hg19 released biological replicates with identical biosample ENCFF000OZB bigWig raw signal ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 94501892 Richard Myers, HAIB 8c037e4ebd25e6f90a4e102e33210b4b https://www.encodeproject.org/files/ENCFF000OZB/@@download/ENCFF000OZB.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OZD bigWig raw signal ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 220804103 Richard Myers, HAIB 941d8c87a23f202faee53647252c9ff7 https://www.encodeproject.org/files/ENCFF000OZD/@@download/ENCFF000OZD.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OZI fastq reads ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 946029991 Richard Myers, HAIB 1628c51977e18dec9dbfe748ac8f0fa8 https://www.encodeproject.org/files/ENCFF000OZI/@@download/ENCFF000OZI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000OZL fastq reads ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1432918401 Richard Myers, HAIB 7665e292aa000b62cc22878baf6bc26c https://www.encodeproject.org/files/ENCFF000OZL/@@download/ENCFF000OZL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UDS bed broadPeak peaks ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 1 88864 Richard Myers, HAIB ade3440bcf646f92e6e4a1d275259ebd https://www.encodeproject.org/files/ENCFF001UDS/@@download/ENCFF001UDS.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UDT bed broadPeak peaks ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 1 69822 Richard Myers, HAIB 92b2a69ad0e7ebc764e8b2b7b9fc88fa https://www.encodeproject.org/files/ENCFF001UDT/@@download/ENCFF001UDT.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000ZTU bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE ENCFF001VRI 1206450 Kevin White, UChicago 787b293d4deb840b373bb00481e02ead https://www.encodeproject.org/files/ENCFF000ZTU/@@download/ENCFF000ZTU.bigBed hg19 archived low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000ZTV bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 557170969 Kevin White, UChicago bc5ea7d0770a0ee6f9e9aa50173d56d6 https://www.encodeproject.org/files/ENCFF000ZTV/@@download/ENCFF000ZTV.bam hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZTW bigWig signal ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 293323200 Kevin White, UChicago 4c4772065c94e2322e4037478b0d2b03 https://www.encodeproject.org/files/ENCFF000ZTW/@@download/ENCFF000ZTW.bigWig hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZTX bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 881221125 Kevin White, UChicago bf331637890b133047c147385d557f04 https://www.encodeproject.org/files/ENCFF000ZTX/@@download/ENCFF000ZTX.bam hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZUB fastq reads ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 1 36 single-ended 906298007 Kevin White, UChicago 1a7f744b33a6cbd77eb4f014f19e0677 https://www.encodeproject.org/files/ENCFF000ZUB/@@download/ENCFF000ZUB.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ZVJ/ released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000ZUK fastq reads ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 1 36 single-ended 1102030713 Kevin White, UChicago e8bb45c0bb2ea5d23e81d2f02a3d5baf https://www.encodeproject.org/files/ENCFF000ZUK/@@download/ENCFF000ZUK.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ZVP/ released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF001VRI bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 770970 Kevin White, UChicago 64b38546e77f71b87310cbeb7c3bf5d2 https://www.encodeproject.org/files/ENCFF001VRI/@@download/ENCFF001VRI.bed.gz hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF002DDW bed narrowPeak optimal idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 259658 ENCODE Consortium Analysis Working Group 0418ee5601643d9817ef8322430bf64c https://www.encodeproject.org/files/ENCFF002DDW/@@download/ENCFF002DDW.bed.gz hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF642PKG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE ENCFF002DDW 642148 ENCODE Consortium 10427edf0fc46a3f1f8e9fc89503fe7e https://www.encodeproject.org/files/ENCFF642PKG/@@download/ENCFF642PKG.bigBed hg19 archived low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF925YOB bam unfiltered alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUK, ENCFF643CGH 1341231885 ENCODE Processing Pipeline 190eedfd86f226a546f4f6ca7e66bbc8 https://www.encodeproject.org/files/ENCFF925YOB/@@download/ENCFF925YOB.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF939IDF bam unfiltered alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUB, ENCFF643CGH 1097482832 ENCODE Processing Pipeline d658d1effb040c29c04413cd30c93895 https://www.encodeproject.org/files/ENCFF939IDF/@@download/ENCFF939IDF.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF716QYC bam unfiltered alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUB, ENCFF807MUK 1093666545 ENCODE Processing Pipeline 76c30cfd90a66449b502c34548f468b5 https://www.encodeproject.org/files/ENCFF716QYC/@@download/ENCFF716QYC.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF880ZXO bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUK, ENCFF643CGH 891818812 ENCODE Processing Pipeline 036ad6a56f21e7e33473fdc83b190004 https://www.encodeproject.org/files/ENCFF880ZXO/@@download/ENCFF880ZXO.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF082TOF bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUB, ENCFF643CGH 772685495 ENCODE Processing Pipeline 7fe39ce528b6fa92f551d554b5fe39cd https://www.encodeproject.org/files/ENCFF082TOF/@@download/ENCFF082TOF.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF479NOE bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUB, ENCFF807MUK 773077535 ENCODE Processing Pipeline 097134d1b04a991df449988484c14655 https://www.encodeproject.org/files/ENCFF479NOE/@@download/ENCFF479NOE.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF498TWR bam unfiltered alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUK, ENCFF807MUK 1333933871 ENCODE Processing Pipeline 2d5b8453f5ab7359b5b8e2feb08a2a53 https://www.encodeproject.org/files/ENCFF498TWR/@@download/ENCFF498TWR.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF237CLM bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUK, ENCFF807MUK 892320034 ENCODE Processing Pipeline ec311d7a26efcc2327eea1264b3f172f https://www.encodeproject.org/files/ENCFF237CLM/@@download/ENCFF237CLM.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF647USW bigWig signal p-value ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF082TOF, ENCFF240RBJ, ENCFF510BRO 644783874 ENCODE Processing Pipeline 662ca3a1156908814705dc3f8816bcb9 https://www.encodeproject.org/files/ENCFF647USW/@@download/ENCFF647USW.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF373KER bigWig signal p-value ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 625669351 ENCODE Processing Pipeline 1a7a88eb29d7edfba509deba7263435d https://www.encodeproject.org/files/ENCFF373KER/@@download/ENCFF373KER.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF716MRV bigWig signal p-value ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF510BRO, ENCFF880ZXO 442926380 ENCODE Processing Pipeline cc0c5bf0bb24d43b75e6de75f3bb9ca9 https://www.encodeproject.org/files/ENCFF716MRV/@@download/ENCFF716MRV.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF185FTA bigWig signal p-value ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF082TOF, ENCFF240RBJ, ENCFF510BRO, ENCFF880ZXO 895354735 ENCODE Processing Pipeline 1304e9d12e857b4054971db5e93c878c https://www.encodeproject.org/files/ENCFF185FTA/@@download/ENCFF185FTA.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF106ZFR bigWig signal p-value ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF237CLM, ENCFF998TMC 443475098 ENCODE Processing Pipeline f7bd9d4bcded16b6cd816ee80dacd2a4 https://www.encodeproject.org/files/ENCFF106ZFR/@@download/ENCFF106ZFR.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF508NAI bigWig signal p-value ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF237CLM, ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 886524775 ENCODE Processing Pipeline e7074510afdd280fe009309aa8adf944 https://www.encodeproject.org/files/ENCFF508NAI/@@download/ENCFF508NAI.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF382CKL bigWig fold change over control ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF082TOF, ENCFF240RBJ, ENCFF510BRO 561759379 ENCODE Processing Pipeline d20f10f3b15289209093310c0f4f5b7a https://www.encodeproject.org/files/ENCFF382CKL/@@download/ENCFF382CKL.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF467ICU bigWig fold change over control ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 561997003 ENCODE Processing Pipeline f56e699c767a09fa71af450a22db29fe https://www.encodeproject.org/files/ENCFF467ICU/@@download/ENCFF467ICU.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF343YGK bigWig fold change over control ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF510BRO, ENCFF880ZXO 430229126 ENCODE Processing Pipeline 04d8abd4a80ef7d4b256d9e022477c07 https://www.encodeproject.org/files/ENCFF343YGK/@@download/ENCFF343YGK.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF533LHP bigWig fold change over control ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF237CLM, ENCFF998TMC 431218366 ENCODE Processing Pipeline 5bff693f4b23c031bdddb567d37536b1 https://www.encodeproject.org/files/ENCFF533LHP/@@download/ENCFF533LHP.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF497LRA bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF082TOF, ENCFF240RBJ, ENCFF510BRO 6724265 ENCODE Processing Pipeline 5b959489a4fdb4f721d7a2695c3f6079 https://www.encodeproject.org/files/ENCFF497LRA/@@download/ENCFF497LRA.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF879COR bigWig fold change over control ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF082TOF, ENCFF240RBJ, ENCFF510BRO, ENCFF880ZXO 892001569 ENCODE Processing Pipeline 77b73cc61c7381ed5408619b7eed506c https://www.encodeproject.org/files/ENCFF879COR/@@download/ENCFF879COR.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF148KWA bigWig fold change over control ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF237CLM, ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 879134871 ENCODE Processing Pipeline 8ce767eb0c1e63d53f8a8725f4e0eaf7 https://www.encodeproject.org/files/ENCFF148KWA/@@download/ENCFF148KWA.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF960LWB bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF510BRO, ENCFF880ZXO 4392936 ENCODE Processing Pipeline 6df184b646ff792f12ea19a54b11110a https://www.encodeproject.org/files/ENCFF960LWB/@@download/ENCFF960LWB.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF185LGX bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 6732109 ENCODE Processing Pipeline 6389b0de0c4dd822db5e985c1821aee5 https://www.encodeproject.org/files/ENCFF185LGX/@@download/ENCFF185LGX.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF776QVY bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF082TOF, ENCFF240RBJ, ENCFF510BRO, ENCFF880ZXO 6883715 ENCODE Processing Pipeline c941381935683b1e91a01147dee2df40 https://www.encodeproject.org/files/ENCFF776QVY/@@download/ENCFF776QVY.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF628YBF bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF497LRA 12603324 ENCODE Processing Pipeline 7d9618b8402e380c07d2fec5ae3f8fae https://www.encodeproject.org/files/ENCFF628YBF/@@download/ENCFF628YBF.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF766MMM bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF237CLM, ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 6894146 ENCODE Processing Pipeline 1191f50298ae3451a569e328ac65e919 https://www.encodeproject.org/files/ENCFF766MMM/@@download/ENCFF766MMM.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF444LYN bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF237CLM, ENCFF998TMC 4401824 ENCODE Processing Pipeline b2a6cdd23e21ed9fac80af72438d8161 https://www.encodeproject.org/files/ENCFF444LYN/@@download/ENCFF444LYN.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF541TAI bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF960LWB 10893477 ENCODE Processing Pipeline 3536355cf363690db15a4beb44580396 https://www.encodeproject.org/files/ENCFF541TAI/@@download/ENCFF541TAI.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF435WAV bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF444LYN 10888797 ENCODE Processing Pipeline 933d6d944957089ff810c8ea8c7197ac https://www.encodeproject.org/files/ENCFF435WAV/@@download/ENCFF435WAV.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF626KQA bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF766MMM 12930378 ENCODE Processing Pipeline 518c72a385c06925b269efe127af2677 https://www.encodeproject.org/files/ENCFF626KQA/@@download/ENCFF626KQA.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF879REQ bed narrowPeak conservative idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF001TDO, ENCFF185LGX, ENCFF444LYN, ENCFF766MMM 160165 ENCODE Processing Pipeline f13dd0fa61360b2d42d1a03660019329 https://www.encodeproject.org/files/ENCFF879REQ/@@download/ENCFF879REQ.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF997NUA bed narrowPeak optimal idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF419RSJ, ENCFF497LRA, ENCFF776QVY, ENCFF960LWB 367057 ENCODE Processing Pipeline 6e6fbb7e4e34db3c1698ef089d41790b https://www.encodeproject.org/files/ENCFF997NUA/@@download/ENCFF997NUA.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF600PRL bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF776QVY 12949072 ENCODE Processing Pipeline 9b7dbcbc49c1884c59b1e440dd96e59b https://www.encodeproject.org/files/ENCFF600PRL/@@download/ENCFF600PRL.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF174QFT bigBed narrowPeak conservative idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF333IVK 399026 ENCODE Processing Pipeline 8ec17b4b218297e05b4461d2413c5d33 https://www.encodeproject.org/files/ENCFF174QFT/@@download/ENCFF174QFT.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF989DVP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF997NUA 729707 ENCODE Processing Pipeline 353ffa34757b8547e27b25a5df8592c6 https://www.encodeproject.org/files/ENCFF989DVP/@@download/ENCFF989DVP.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF625CLQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF879REQ 396360 ENCODE Processing Pipeline c9f1493d4bf3dbc6e3bcc10264b4d4a7 https://www.encodeproject.org/files/ENCFF625CLQ/@@download/ENCFF625CLQ.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF298GGE bigBed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF185LGX 12608651 ENCODE Processing Pipeline beebb2d62b6d7ed5b73cb189fd44a02c https://www.encodeproject.org/files/ENCFF298GGE/@@download/ENCFF298GGE.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF333IVK bed narrowPeak conservative idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF419RSJ, ENCFF497LRA, ENCFF776QVY, ENCFF960LWB 160956 ENCODE Processing Pipeline 8e08a706ad3498fd94909dc46d52daf0 https://www.encodeproject.org/files/ENCFF333IVK/@@download/ENCFF333IVK.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF929YBC bed narrowPeak optimal idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF001TDO, ENCFF185LGX, ENCFF444LYN, ENCFF766MMM 366797 ENCODE Processing Pipeline c240b9984e20cb1538912c0c4aa2b41c https://www.encodeproject.org/files/ENCFF929YBC/@@download/ENCFF929YBC.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF940HFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF929YBC 727463 ENCODE Processing Pipeline 944ca031074a14f7586cee57dbbb075e https://www.encodeproject.org/files/ENCFF940HFQ/@@download/ENCFF940HFQ.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000OZE bam alignments ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZS 1548780097 Richard Myers, HAIB ec79c2542db35deeeedf874fe8daef85 https://www.encodeproject.org/files/ENCFF000OZE/@@download/ENCFF000OZE.bam hg19 released biological replicates with identical biosample ENCFF000OZF bam alignments ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OZU 2161326483 Richard Myers, HAIB b882e8de9496bf1a09c00f36d40864e9 https://www.encodeproject.org/files/ENCFF000OZF/@@download/ENCFF000OZF.bam hg19 released biological replicates with identical biosample ENCFF000OZG bigBed broadPeak peaks ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDU 96853 Richard Myers, HAIB edb65430b5b6ff5e623add6457b7cc92 https://www.encodeproject.org/files/ENCFF000OZG/@@download/ENCFF000OZG.bigBed hg19 released biological replicates with identical biosample ENCFF000OZH bigBed broadPeak peaks ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDV 122515 Richard Myers, HAIB ec3f8242e3adcf60e70c0600f36d44eb https://www.encodeproject.org/files/ENCFF000OZH/@@download/ENCFF000OZH.bigBed hg19 released biological replicates with identical biosample ENCFF000OZJ bigWig raw signal ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 310030824 Richard Myers, HAIB ce92b45272b04f093b9c8d9ee1685569 https://www.encodeproject.org/files/ENCFF000OZJ/@@download/ENCFF000OZJ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OZK bigWig raw signal ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 141553418 Richard Myers, HAIB 9418bb3265fbd3ccd09893c9254c9e29 https://www.encodeproject.org/files/ENCFF000OZK/@@download/ENCFF000OZK.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OZS fastq reads ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1585026686 Richard Myers, HAIB c9b534ba7cf3a5a026c9377917473a10 https://www.encodeproject.org/files/ENCFF000OZS/@@download/ENCFF000OZS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF000OZU fastq reads ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2201139441 Richard Myers, HAIB a97bde4415f59650ace4e5d96c62094c https://www.encodeproject.org/files/ENCFF000OZU/@@download/ENCFF000OZU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF001UDU bed broadPeak peaks ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 28789 Richard Myers, HAIB 14e97cdc854066efc8333744963e4983 https://www.encodeproject.org/files/ENCFF001UDU/@@download/ENCFF001UDU.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UDV bed broadPeak peaks ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 49594 Richard Myers, HAIB dba3d6c194b63ebe7ca56ab58137c820 https://www.encodeproject.org/files/ENCFF001UDV/@@download/ENCFF001UDV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001HAP bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBC 686441464 John Stamatoyannopoulos, UW 73b525de7f9cfa67d29a9dc5f987b5b4 https://www.encodeproject.org/files/ENCFF001HAP/@@download/ENCFF001HAP.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAQ bigBed broadPeak hotspots ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMZ 3016390 John Stamatoyannopoulos, UW a7fe4f4bf92a1e7a139e96c2a3b8c212 https://www.encodeproject.org/files/ENCFF001HAQ/@@download/ENCFF001HAQ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAR bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBD 819029023 John Stamatoyannopoulos, UW 73c7bb4455883f3b38d62c46d4aa9aff https://www.encodeproject.org/files/ENCFF001HAR/@@download/ENCFF001HAR.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAS bigBed broadPeak hotspots ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XNA 3212550 John Stamatoyannopoulos, UW 67eba7144f0f24983fa44a84215814eb https://www.encodeproject.org/files/ENCFF001HAS/@@download/ENCFF001HAS.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAT bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XNB 1070354 John Stamatoyannopoulos, UW 85d66d357f9ebd6afeffe1dfeec45e9c https://www.encodeproject.org/files/ENCFF001HAT/@@download/ENCFF001HAT.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAU bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XNC 1148929 John Stamatoyannopoulos, UW bc6557f7d280658fcda15a81ea6ef50a https://www.encodeproject.org/files/ENCFF001HAU/@@download/ENCFF001HAU.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAW bigWig raw signal ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HAP 86569318 John Stamatoyannopoulos, UW 256b8421ceb5b2f682fa146455f2edbe https://www.encodeproject.org/files/ENCFF001HAW/@@download/ENCFF001HAW.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HAX bigWig raw signal ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAR 105816210 John Stamatoyannopoulos, UW b5f9505aff17fd27ddbbdc9825cec362 https://www.encodeproject.org/files/ENCFF001HAX/@@download/ENCFF001HAX.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HBC fastq reads ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1160616849 John Stamatoyannopoulos, UW c7348a426861884fbbfc236d745eab33 https://www.encodeproject.org/files/ENCFF001HBC/@@download/ENCFF001HBC.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HBK/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HBD fastq reads ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1302224581 John Stamatoyannopoulos, UW 8e564f4d9e2d78fdaa134bf0f31c482b https://www.encodeproject.org/files/ENCFF001HBD/@@download/ENCFF001HBD.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HBK/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XMZ bed broadPeak hotspots ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HAP 2100227 John Stamatoyannopoulos, UW 2417564d9be6e719de5a340c0b2adfae https://www.encodeproject.org/files/ENCFF001XMZ/@@download/ENCFF001XMZ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XNA bed broadPeak hotspots ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAR 2272851 John Stamatoyannopoulos, UW 7c95c281c27d2134fe9a3cad396f5881 https://www.encodeproject.org/files/ENCFF001XNA/@@download/ENCFF001XNA.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XNB bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HAP 756857 John Stamatoyannopoulos, UW b2b8773c887cd76b652c098c88503eb9 https://www.encodeproject.org/files/ENCFF001XNB/@@download/ENCFF001XNB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XNC bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAR 820524 John Stamatoyannopoulos, UW e4f67fbb8502d9d6a14a8d9035605c42 https://www.encodeproject.org/files/ENCFF001XNC/@@download/ENCFF001XNC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF002DCE bed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HAP, ENCFF001HAR 930755 ENCODE Consortium Analysis Working Group 60012a39f4d1835552dfba16dc8331a7 https://www.encodeproject.org/files/ENCFF002DCE/@@download/ENCFF002DCE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF562FZB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCE 1943427 ENCODE Consortium 23516277a9143698be6703cb708794b4 https://www.encodeproject.org/files/ENCFF562FZB/@@download/ENCFF562FZB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF545IDM bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBC, ENCFF643CGH 320670996 ENCODE Processing Pipeline 0f96acb6fa9751db1fbb9387fde46455 https://www.encodeproject.org/files/ENCFF545IDM/@@download/ENCFF545IDM.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF843CGE bam unfiltered alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBC, ENCFF643CGH 1152530257 ENCODE Processing Pipeline c51842c280a3d7e8126b0d92bffe9f34 https://www.encodeproject.org/files/ENCFF843CGE/@@download/ENCFF843CGE.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF926GLG bam unfiltered alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HBD, ENCFF643CGH 1316066503 ENCODE Processing Pipeline b0486d2b76e558adc87f7e6f5aba76ad https://www.encodeproject.org/files/ENCFF926GLG/@@download/ENCFF926GLG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF993RDX bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HBD, ENCFF643CGH 407458034 ENCODE Processing Pipeline 931010c8c5260c0d30fd82319062aa09 https://www.encodeproject.org/files/ENCFF993RDX/@@download/ENCFF993RDX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF524OIZ bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HBD, ENCFF807MUK 404917790 ENCODE Processing Pipeline d9749ca2878ffe054e473558a82fef38 https://www.encodeproject.org/files/ENCFF524OIZ/@@download/ENCFF524OIZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF384PPN bam unfiltered alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBC, ENCFF807MUK 1152057445 ENCODE Processing Pipeline 6b4c6f38cfa004c0dc8bc5994c9eff0e https://www.encodeproject.org/files/ENCFF384PPN/@@download/ENCFF384PPN.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF116RRR bam unfiltered alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HBD, ENCFF807MUK 1314568085 ENCODE Processing Pipeline 86862721619dbdb7ef77c01f6adb8b43 https://www.encodeproject.org/files/ENCFF116RRR/@@download/ENCFF116RRR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF451AFR bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBC, ENCFF807MUK 318449367 ENCODE Processing Pipeline bcf46523871031db5fce736e2f80faaf https://www.encodeproject.org/files/ENCFF451AFR/@@download/ENCFF451AFR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF692TLV bigWig signal p-value ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF186FRO, ENCFF993RDX 224686720 ENCODE Processing Pipeline 05090e20beb509c33ff1c9884af075df https://www.encodeproject.org/files/ENCFF692TLV/@@download/ENCFF692TLV.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF635IPQ bigWig signal p-value ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF186FRO, ENCFF545IDM, ENCFF993RDX 280036043 ENCODE Processing Pipeline 9a9ca505a164d38537852fd9813da9b0 https://www.encodeproject.org/files/ENCFF635IPQ/@@download/ENCFF635IPQ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF570DEX bigWig signal p-value ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF186FRO, ENCFF545IDM 238302118 ENCODE Processing Pipeline 5931b26e757d5d87cf421a21c487d58a https://www.encodeproject.org/files/ENCFF570DEX/@@download/ENCFF570DEX.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF508YIX bigWig fold change over control ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF186FRO, ENCFF545IDM 121129840 ENCODE Processing Pipeline 8022fe2c71c47a8c2287ab5841add4f1 https://www.encodeproject.org/files/ENCFF508YIX/@@download/ENCFF508YIX.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF272DTZ bigWig fold change over control ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF186FRO, ENCFF545IDM, ENCFF993RDX 251915699 ENCODE Processing Pipeline cd968c80d5ba8d0615c0f00283a51161 https://www.encodeproject.org/files/ENCFF272DTZ/@@download/ENCFF272DTZ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF963OEZ bigWig fold change over control ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF186FRO, ENCFF993RDX 153091355 ENCODE Processing Pipeline 0336acec86408d27432a1991a771df34 https://www.encodeproject.org/files/ENCFF963OEZ/@@download/ENCFF963OEZ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF946NYT bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF186FRO, ENCFF545IDM 3206837 ENCODE Processing Pipeline 28c7579b7db6fcc71aa729634ac63f74 https://www.encodeproject.org/files/ENCFF946NYT/@@download/ENCFF946NYT.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF239IHC bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF186FRO, ENCFF545IDM, ENCFF993RDX 4520945 ENCODE Processing Pipeline 67c7e229692f837709fa5bc1e5857a14 https://www.encodeproject.org/files/ENCFF239IHC/@@download/ENCFF239IHC.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF897RQN bed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239IHC, ENCFF419RSJ, ENCFF866KZX, ENCFF946NYT 811566 ENCODE Processing Pipeline 6387b03f7c26088af0dceee7900d9db4 https://www.encodeproject.org/files/ENCFF897RQN/@@download/ENCFF897RQN.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF121SLY bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF866KZX 9922209 ENCODE Processing Pipeline 4ec0cdc73848c60352426d1b46c516c0 https://www.encodeproject.org/files/ENCFF121SLY/@@download/ENCFF121SLY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF909MAJ bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239IHC 10702599 ENCODE Processing Pipeline 5ccfdfc51e1dedb1adf3e5123d657135 https://www.encodeproject.org/files/ENCFF909MAJ/@@download/ENCFF909MAJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF549ALU bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF946NYT 6448890 ENCODE Processing Pipeline 0a731a64c0d63900804cad21f7e90058 https://www.encodeproject.org/files/ENCFF549ALU/@@download/ENCFF549ALU.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF899NZJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF634TZO 1370481 ENCODE Processing Pipeline 1ce4639529aef559a6ee97972711a09a https://www.encodeproject.org/files/ENCFF899NZJ/@@download/ENCFF899NZJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF866KZX bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF186FRO, ENCFF993RDX 4144628 ENCODE Processing Pipeline 63b17a3512cb0627605f3b10c872cc17 https://www.encodeproject.org/files/ENCFF866KZX/@@download/ENCFF866KZX.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF634TZO bed narrowPeak conservative idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF239IHC, ENCFF419RSJ, ENCFF866KZX, ENCFF946NYT 783065 ENCODE Processing Pipeline 080519ead00c0bd80cf840db80f778f3 https://www.encodeproject.org/files/ENCFF634TZO/@@download/ENCFF634TZO.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF076YOD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF897RQN 1407699 ENCODE Processing Pipeline 098bc2d96cbd5680085c374219b676fc https://www.encodeproject.org/files/ENCFF076YOD/@@download/ENCFF076YOD.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF276JDQ bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF131LGY, ENCFF451AFR, ENCFF524OIZ 4317070 ENCODE Processing Pipeline a93fe4cdab3d7d93044671b614fa3f7f https://www.encodeproject.org/files/ENCFF276JDQ/@@download/ENCFF276JDQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF609BWD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF827HHM 1263229 ENCODE Processing Pipeline fd25debbf1fe80b821af4293447cddfa https://www.encodeproject.org/files/ENCFF609BWD/@@download/ENCFF609BWD.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF428SWE bigWig signal p-value ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF131LGY, ENCFF524OIZ 244608072 ENCODE Processing Pipeline 3e1c29271d2f7e72e732cdd12455e139 https://www.encodeproject.org/files/ENCFF428SWE/@@download/ENCFF428SWE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF922VKV bigWig signal p-value ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF131LGY, ENCFF451AFR 224340025 ENCODE Processing Pipeline 419704506abb496ec4df8c893f2d4d28 https://www.encodeproject.org/files/ENCFF922VKV/@@download/ENCFF922VKV.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF813SCM bigWig signal p-value ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF131LGY, ENCFF451AFR, ENCFF524OIZ 286410614 ENCODE Processing Pipeline 745a9f76ef79f1cf7d6e3853b6311d7f https://www.encodeproject.org/files/ENCFF813SCM/@@download/ENCFF813SCM.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF830SNU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF131LGY, ENCFF524OIZ 3974507 ENCODE Processing Pipeline 11f636264bfc02c3ed2b9491977cee63 https://www.encodeproject.org/files/ENCFF830SNU/@@download/ENCFF830SNU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF441CVZ bigWig fold change over control ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF131LGY, ENCFF451AFR 121067558 ENCODE Processing Pipeline 126be663f85d2c8f946823058ccb719b https://www.encodeproject.org/files/ENCFF441CVZ/@@download/ENCFF441CVZ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF713QSW bigWig fold change over control ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF131LGY, ENCFF524OIZ 153262210 ENCODE Processing Pipeline b104d99b83b9fcdcdca2912809239b62 https://www.encodeproject.org/files/ENCFF713QSW/@@download/ENCFF713QSW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF847BIA bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF174YEU 6186001 ENCODE Processing Pipeline 0dc7897ef3479369a2d7400efa43443f https://www.encodeproject.org/files/ENCFF847BIA/@@download/ENCFF847BIA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF009DHZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF930QUM 1293610 ENCODE Processing Pipeline b49f55060c30013a39f416d44f4c96aa https://www.encodeproject.org/files/ENCFF009DHZ/@@download/ENCFF009DHZ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF174YEU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF131LGY, ENCFF451AFR 3018489 ENCODE Processing Pipeline 050555ae2686fc4c4dc35428f1149d66 https://www.encodeproject.org/files/ENCFF174YEU/@@download/ENCFF174YEU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF911SET bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF276JDQ 10447558 ENCODE Processing Pipeline 4edba31694ad34396cf7c1dbbc6d33fb https://www.encodeproject.org/files/ENCFF911SET/@@download/ENCFF911SET.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF827HHM bed narrowPeak conservative idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF174YEU, ENCFF276JDQ, ENCFF830SNU 713752 ENCODE Processing Pipeline e17d4af166cf60dbc9c92dd7a68f94f4 https://www.encodeproject.org/files/ENCFF827HHM/@@download/ENCFF827HHM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF469OOI bigWig fold change over control ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF131LGY, ENCFF451AFR, ENCFF524OIZ 252729140 ENCODE Processing Pipeline 525633f5028289af7fecbfdcc0d080d1 https://www.encodeproject.org/files/ENCFF469OOI/@@download/ENCFF469OOI.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF824OSW bigBed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF830SNU 7915659 ENCODE Processing Pipeline 9b9829bc07ef1cbf002374dfda5f87f4 https://www.encodeproject.org/files/ENCFF824OSW/@@download/ENCFF824OSW.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF930QUM bed narrowPeak optimal idr thresholded peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF174YEU, ENCFF276JDQ, ENCFF830SNU 736511 ENCODE Processing Pipeline bd61a515467d59a908d9e5668b3e868e https://www.encodeproject.org/files/ENCFF930QUM/@@download/ENCFF930QUM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF000NHR bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NID 1230861518 Richard Myers, HAIB fd2c56dc5794c47c0ea08d2ce4ab4a62 https://www.encodeproject.org/files/ENCFF000NHR/@@download/ENCFF000NHR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000NHS bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NIG 1299559271 Richard Myers, HAIB a42ffd4aa1bc91c55c5a5c0688d3a08d https://www.encodeproject.org/files/ENCFF000NHS/@@download/ENCFF000NHS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000NHT bigBed broadPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TTT 345983 Richard Myers, HAIB 58fcfdfe75aecfb13b514b691acc9e02 https://www.encodeproject.org/files/ENCFF000NHT/@@download/ENCFF000NHT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000NHU bigBed broadPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TTU 1043351 Richard Myers, HAIB 5be4fdc54bfdbac99e4bc1da53b850a6 https://www.encodeproject.org/files/ENCFF000NHU/@@download/ENCFF000NHU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000NHW bigWig raw signal ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 1 8111165 Richard Myers, HAIB af4299485f1334ade67023c0eea7204f https://www.encodeproject.org/files/ENCFF000NHW/@@download/ENCFF000NHW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000NHX bigWig raw signal ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 1 42966016 Richard Myers, HAIB 0e6410a670fbd13be724b04b9881b12d https://www.encodeproject.org/files/ENCFF000NHX/@@download/ENCFF000NHX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000NID fastq reads ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1218127733 Richard Myers, HAIB 3fe33b2312af2ec05f836da848149000 https://www.encodeproject.org/files/ENCFF000NID/@@download/ENCFF000NID.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000NIG fastq reads ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1314398922 Richard Myers, HAIB f275a655cdc1b6c36e2a495ae58c31c7 https://www.encodeproject.org/files/ENCFF000NIG/@@download/ENCFF000NIG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001TTT bed broadPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 1 178327 Richard Myers, HAIB d8fcc2981c6f103ec015ab27b92dfd91 https://www.encodeproject.org/files/ENCFF001TTT/@@download/ENCFF001TTT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF001TTU bed broadPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 1 647694 Richard Myers, HAIB 4cf4e82f60be7500e943caed8379f7ac https://www.encodeproject.org/files/ENCFF001TTU/@@download/ENCFF001TTU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CGB bed narrowPeak optimal idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 458743 ENCODE Consortium Analysis Working Group ac322aa7e90c92f92ae5c1fb1812dd23 https://www.encodeproject.org/files/ENCFF002CGB/@@download/ENCFF002CGB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF453AKT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGB 1092735 ENCODE Consortium f015399c2eddc88fc401f1023158d997 https://www.encodeproject.org/files/ENCFF453AKT/@@download/ENCFF453AKT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF823IFJ bam unfiltered alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NID, ENCFF643CGH 1329910423 ENCODE Processing Pipeline 5bb1f6e6d6544902a88bcbf01b9b2a00 https://www.encodeproject.org/files/ENCFF823IFJ/@@download/ENCFF823IFJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF264CUG bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NID, ENCFF643CGH 830194280 ENCODE Processing Pipeline eb18d368c829ad429d23dff0382013bb https://www.encodeproject.org/files/ENCFF264CUG/@@download/ENCFF264CUG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF097IFB bam unfiltered alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NIG, ENCFF643CGH 1417111478 ENCODE Processing Pipeline f7c5906fc70face856a8391b6cb02bbc https://www.encodeproject.org/files/ENCFF097IFB/@@download/ENCFF097IFB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF723RMN bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NIG, ENCFF643CGH 852129322 ENCODE Processing Pipeline 404e1adbc724c9ac7944fe4e87875a3e https://www.encodeproject.org/files/ENCFF723RMN/@@download/ENCFF723RMN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF764CRR bam unfiltered alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NID, ENCFF807MUK 1326402587 ENCODE Processing Pipeline 9a607d55c5c44bfe3940d37dc5b57dcc https://www.encodeproject.org/files/ENCFF764CRR/@@download/ENCFF764CRR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF681PEE bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NID, ENCFF807MUK 830308290 ENCODE Processing Pipeline db3ce9a3c339732366965ba5218f2076 https://www.encodeproject.org/files/ENCFF681PEE/@@download/ENCFF681PEE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF659DTG bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NIG, ENCFF807MUK 852305643 ENCODE Processing Pipeline 17016191ea0b95dc027d971583ddedf6 https://www.encodeproject.org/files/ENCFF659DTG/@@download/ENCFF659DTG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF025VWP bam unfiltered alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NIG, ENCFF807MUK 1412351387 ENCODE Processing Pipeline 059f6d0b67352a28848d705d6c467176 https://www.encodeproject.org/files/ENCFF025VWP/@@download/ENCFF025VWP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF231MJL bigWig signal p-value ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF723RMN 567954083 ENCODE Processing Pipeline 931df44c30bf6f0a8bc1e33d8768e0e9 https://www.encodeproject.org/files/ENCFF231MJL/@@download/ENCFF231MJL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF551VZZ bigWig signal p-value ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF264CUG, ENCFF656HEF 594809917 ENCODE Processing Pipeline 716d12c67d247658fefc34ce07403a5c https://www.encodeproject.org/files/ENCFF551VZZ/@@download/ENCFF551VZZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF395KCJ bigWig signal p-value ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF264CUG, ENCFF656HEF, ENCFF723RMN 810909995 ENCODE Processing Pipeline e220348ebcf91605c647e1cb63fcec44 https://www.encodeproject.org/files/ENCFF395KCJ/@@download/ENCFF395KCJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF882XMM bigWig fold change over control ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF264CUG, ENCFF656HEF 483223242 ENCODE Processing Pipeline 099785060c8773663693c427d8cc5587 https://www.encodeproject.org/files/ENCFF882XMM/@@download/ENCFF882XMM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF838VRT bigWig fold change over control ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF723RMN 504565390 ENCODE Processing Pipeline 78b2c20fa6302d3417e78c41f53a93fc https://www.encodeproject.org/files/ENCFF838VRT/@@download/ENCFF838VRT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF532LIT bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF264CUG, ENCFF656HEF 5940677 ENCODE Processing Pipeline 3bbecb511a73a6a035e13b6de042db91 https://www.encodeproject.org/files/ENCFF532LIT/@@download/ENCFF532LIT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF688NPY bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF723RMN 6812341 ENCODE Processing Pipeline 60f25b711053d308438c9e1972fdf11f https://www.encodeproject.org/files/ENCFF688NPY/@@download/ENCFF688NPY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF042IFX bigWig fold change over control ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF264CUG, ENCFF656HEF, ENCFF723RMN 801480528 ENCODE Processing Pipeline 579a38b5d079d1820a15c0e411405cb0 https://www.encodeproject.org/files/ENCFF042IFX/@@download/ENCFF042IFX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF877EIF bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF264CUG, ENCFF656HEF, ENCFF723RMN 7076734 ENCODE Processing Pipeline f83f07b8057aa1dbc6d224556de01ac3 https://www.encodeproject.org/files/ENCFF877EIF/@@download/ENCFF877EIF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF936EFC bed narrowPeak conservative idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF532LIT, ENCFF688NPY, ENCFF877EIF 350391 ENCODE Processing Pipeline 0ceaa4cb53b644405e40fa2e9fef86a8 https://www.encodeproject.org/files/ENCFF936EFC/@@download/ENCFF936EFC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF120JAF bigBed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF688NPY 12573669 ENCODE Processing Pipeline 83df7a7a2489f53017c8d3b924be1f40 https://www.encodeproject.org/files/ENCFF120JAF/@@download/ENCFF120JAF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF052DUJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF936EFC 730607 ENCODE Processing Pipeline 31e27db7f01bc153e0b097c01b3c52bf https://www.encodeproject.org/files/ENCFF052DUJ/@@download/ENCFF052DUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF464WQJ bigBed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF532LIT 13053284 ENCODE Processing Pipeline 9672ba5f1f3518071e036e100878df4b https://www.encodeproject.org/files/ENCFF464WQJ/@@download/ENCFF464WQJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF494NYR bigBed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF877EIF 12701785 ENCODE Processing Pipeline 5eda4f3487520300cce991ade590946e https://www.encodeproject.org/files/ENCFF494NYR/@@download/ENCFF494NYR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF228CDD bed narrowPeak optimal idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF532LIT, ENCFF688NPY, ENCFF877EIF 554854 ENCODE Processing Pipeline 1194ffcee7a533394c66ad09e99d377f https://www.encodeproject.org/files/ENCFF228CDD/@@download/ENCFF228CDD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF636UKU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF228CDD 1045249 ENCODE Processing Pipeline b2e7a83f5f9029a581aa114c05b8d6f5 https://www.encodeproject.org/files/ENCFF636UKU/@@download/ENCFF636UKU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF845ONM bigWig signal p-value ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF681PEE, ENCFF864UEQ 546154573 ENCODE Processing Pipeline a97d73c3321f6fd8159dd7a107ccfceb https://www.encodeproject.org/files/ENCFF845ONM/@@download/ENCFF845ONM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF883SOP bigWig fold change over control ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF681PEE, ENCFF864UEQ 487826038 ENCODE Processing Pipeline 4add0a7ba1c17abe5330b1cec26468c4 https://www.encodeproject.org/files/ENCFF883SOP/@@download/ENCFF883SOP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF145VWB bigWig fold change over control ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF659DTG, ENCFF864UEQ 503386614 ENCODE Processing Pipeline 1748ae85b12701c7bc5d89256465a7ff https://www.encodeproject.org/files/ENCFF145VWB/@@download/ENCFF145VWB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF613CXH bigWig signal p-value ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF659DTG, ENCFF864UEQ 594647040 ENCODE Processing Pipeline d5297a97cd71273cd7016902145f96d8 https://www.encodeproject.org/files/ENCFF613CXH/@@download/ENCFF613CXH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF379UXX bigWig signal p-value ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF659DTG, ENCFF681PEE, ENCFF864UEQ 811117421 ENCODE Processing Pipeline 8f5a5f73c1f61e0f081b67c3781ca3ee https://www.encodeproject.org/files/ENCFF379UXX/@@download/ENCFF379UXX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF027MPC bigWig fold change over control ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF659DTG, ENCFF681PEE, ENCFF864UEQ 806892629 ENCODE Processing Pipeline 1fc44b71d167a6dc1d9b523b278f05ec https://www.encodeproject.org/files/ENCFF027MPC/@@download/ENCFF027MPC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF842BMF bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF659DTG, ENCFF864UEQ 6682281 ENCODE Processing Pipeline 3c5b424ef087cfc8a72d97312edcfd29 https://www.encodeproject.org/files/ENCFF842BMF/@@download/ENCFF842BMF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF866QPM bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF659DTG, ENCFF681PEE, ENCFF864UEQ 7026477 ENCODE Processing Pipeline ac8f190e2f683561c842b342bb474ff5 https://www.encodeproject.org/files/ENCFF866QPM/@@download/ENCFF866QPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF661GYB bigBed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF396UAX 13039695 ENCODE Processing Pipeline 4ffd4bd1cf4a2f78f3e32bf36b37d467 https://www.encodeproject.org/files/ENCFF661GYB/@@download/ENCFF661GYB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF396UAX bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF681PEE, ENCFF864UEQ 5996856 ENCODE Processing Pipeline 2abacd5b770dec797ae8c3f10802b033 https://www.encodeproject.org/files/ENCFF396UAX/@@download/ENCFF396UAX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF397GOR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF828MWO 718857 ENCODE Processing Pipeline 145f690e653d22585aad6909e8d1a6c4 https://www.encodeproject.org/files/ENCFF397GOR/@@download/ENCFF397GOR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF689IQB bigBed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF866QPM 12642014 ENCODE Processing Pipeline f338b50de0205dd0941047a39b2a4dc1 https://www.encodeproject.org/files/ENCFF689IQB/@@download/ENCFF689IQB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF672FQU bed narrowPeak optimal idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF396UAX, ENCFF842BMF, ENCFF866QPM 537307 ENCODE Processing Pipeline 4efdaea798e890432a3edc08cd6cb780 https://www.encodeproject.org/files/ENCFF672FQU/@@download/ENCFF672FQU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF886ANI bigBed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF842BMF 12408673 ENCODE Processing Pipeline 40c40b9bed183bc9aea1d20ca55a6770 https://www.encodeproject.org/files/ENCFF886ANI/@@download/ENCFF886ANI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF828MWO bed narrowPeak conservative idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF396UAX, ENCFF842BMF, ENCFF866QPM 344007 ENCODE Processing Pipeline 270a460b586b27af521fb22e935a57a5 https://www.encodeproject.org/files/ENCFF828MWO/@@download/ENCFF828MWO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF770NEP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF672FQU 1015062 ENCODE Processing Pipeline 01b2baa670efaf9b034f87ab20d93dee https://www.encodeproject.org/files/ENCFF770NEP/@@download/ENCFF770NEP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF943DRV fastq reads ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF195OVM 4322178531 Michael Snyder, Stanford 75f06ff212b0c2aac409cfe2bbebdb97 SRA:SRR6213587 https://www.encodeproject.org/files/ENCFF943DRV/@@download/ENCFF943DRV.fastq.gz Illumina HiSeq 4000 /files/ENCFF097TMN/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF195OVM fastq reads ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF943DRV 4764428054 Michael Snyder, Stanford 0cd5b58a43a6e1356ad1008448f3c76c SRA:SRR6213587 https://www.encodeproject.org/files/ENCFF195OVM/@@download/ENCFF195OVM.fastq.gz Illumina HiSeq 4000 /files/ENCFF704QNQ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF066CQX bam unfiltered alignments ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF195OVM, ENCFF643CGH, ENCFF943DRV 8338843144 ENCODE Processing Pipeline aa556a78263fa257e16eb5abd2e9ae56 https://www.encodeproject.org/files/ENCFF066CQX/@@download/ENCFF066CQX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF413EEZ bam unfiltered alignments ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF195OVM, ENCFF807MUK, ENCFF943DRV 8334818325 ENCODE Processing Pipeline 07043a8e599b0b912f481de52d92163c https://www.encodeproject.org/files/ENCFF413EEZ/@@download/ENCFF413EEZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF888CAT bam alignments ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF195OVM, ENCFF643CGH, ENCFF943DRV 5868323236 ENCODE Processing Pipeline a60a9a560e4f1a6e93b61db2fdf466d9 https://www.encodeproject.org/files/ENCFF888CAT/@@download/ENCFF888CAT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF384ZYV bam alignments ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF195OVM, ENCFF807MUK, ENCFF943DRV 5855689567 ENCODE Processing Pipeline 297bf52930754cc33bdeb344ba2b2b62 https://www.encodeproject.org/files/ENCFF384ZYV/@@download/ENCFF384ZYV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF655OUP bigWig signal p-value ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF047UXO, ENCFF384ZYV 1452897495 ENCODE Processing Pipeline c2db77080f88ba88dfca4903d8fad45d https://www.encodeproject.org/files/ENCFF655OUP/@@download/ENCFF655OUP.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF389ULP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF689PNU 641407 ENCODE Processing Pipeline 3b417006cf538a3d1d9dd4d049b06104 https://www.encodeproject.org/files/ENCFF389ULP/@@download/ENCFF389ULP.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF481YEK bigWig signal p-value ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF308UCP, ENCFF888CAT 1455883513 ENCODE Processing Pipeline 903a0c1b8231cf50fe1b6fb168866a60 https://www.encodeproject.org/files/ENCFF481YEK/@@download/ENCFF481YEK.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF689PNU bed narrowPeak peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF308UCP, ENCFF888CAT 7147531 ENCODE Processing Pipeline 3c8a87eb8a64a967ef3b56ebae5590e0 https://www.encodeproject.org/files/ENCFF689PNU/@@download/ENCFF689PNU.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF318WVA bigBed narrowPeak peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF689PNU 13022515 ENCODE Processing Pipeline 99ba34c5be3016d5a4d45924dc1dd8eb https://www.encodeproject.org/files/ENCFF318WVA/@@download/ENCFF318WVA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF410VLN bigWig fold change over control ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF308UCP, ENCFF888CAT 1555171859 ENCODE Processing Pipeline 01d5d232467131827a0cbaff37e38969 https://www.encodeproject.org/files/ENCFF410VLN/@@download/ENCFF410VLN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF968XMG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF389ULP 1381477 ENCODE Processing Pipeline 24494035fb3c3570f6a218c084603f79 https://www.encodeproject.org/files/ENCFF968XMG/@@download/ENCFF968XMG.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF604WTQ bigWig fold change over control ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF047UXO, ENCFF384ZYV 1553334468 ENCODE Processing Pipeline b48e645b14a8b69887439dec7f9f88cd https://www.encodeproject.org/files/ENCFF604WTQ/@@download/ENCFF604WTQ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF098ZOI bed narrowPeak peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF047UXO, ENCFF384ZYV 7114804 ENCODE Processing Pipeline 62bf2ddce51ce6253b35e38ded5982d6 https://www.encodeproject.org/files/ENCFF098ZOI/@@download/ENCFF098ZOI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF422VUK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF665RHY 1380271 ENCODE Processing Pipeline c0cbb12b6c3f3d2de711f4f3869f2001 https://www.encodeproject.org/files/ENCFF422VUK/@@download/ENCFF422VUK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF889ZWT bigBed narrowPeak peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF098ZOI 12976893 ENCODE Processing Pipeline 9587c7676da1fd46ff68470dfe817ef0 https://www.encodeproject.org/files/ENCFF889ZWT/@@download/ENCFF889ZWT.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF665RHY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF098ZOI 642954 ENCODE Processing Pipeline c3b4d052308458fb1e4d8bb348eba029 https://www.encodeproject.org/files/ENCFF665RHY/@@download/ENCFF665RHY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000NOO bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NOW 599215083 Richard Myers, HAIB 10a6520269a6ddc072844bed97d3d90a https://www.encodeproject.org/files/ENCFF000NOO/@@download/ENCFF000NOO.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NOP bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NPB 887593352 Richard Myers, HAIB 8bee90db4e4afb962346ce387b325471 https://www.encodeproject.org/files/ENCFF000NOP/@@download/ENCFF000NOP.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NOQ bigBed broadPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TVJ 670104 Richard Myers, HAIB 8124dea5daba777b4f71ad015f73037e https://www.encodeproject.org/files/ENCFF000NOQ/@@download/ENCFF000NOQ.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NOR bigBed broadPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TVK 945986 Richard Myers, HAIB bd9ff01c00ca51d1339c124cd313a50d https://www.encodeproject.org/files/ENCFF000NOR/@@download/ENCFF000NOR.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NOU bigWig raw signal ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 13889274 Richard Myers, HAIB e03e2a925ef6ce7a843a07f7113046ef https://www.encodeproject.org/files/ENCFF000NOU/@@download/ENCFF000NOU.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NOV bigWig raw signal ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 45445592 Richard Myers, HAIB f663b04f62bd58919d97bf9a7d80cb89 https://www.encodeproject.org/files/ENCFF000NOV/@@download/ENCFF000NOV.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NOW fastq reads ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 534060512 Richard Myers, HAIB 7692ec02a9e7547d2a2083072684d3b0 https://www.encodeproject.org/files/ENCFF000NOW/@@download/ENCFF000NOW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, low read depth biological replicates with identical biosample ENCFF000NPB fastq reads ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 842828144 Richard Myers, HAIB 8cdde3bf00058a804b8c8622a4bb1ff2 https://www.encodeproject.org/files/ENCFF000NPB/@@download/ENCFF000NPB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, low read depth biological replicates with identical biosample ENCFF001TVJ bed broadPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 341119 Richard Myers, HAIB d08ab28b0b38893df44deea3646f92de https://www.encodeproject.org/files/ENCFF001TVJ/@@download/ENCFF001TVJ.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TVK bed broadPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 570223 Richard Myers, HAIB 748e36fc97e0cb87191282bd930506e0 https://www.encodeproject.org/files/ENCFF001TVK/@@download/ENCFF001TVK.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGN bed narrowPeak optimal idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 418175 ENCODE Consortium Analysis Working Group 36b7722603f1d56d75d0843e8ef1ee81 https://www.encodeproject.org/files/ENCFF002CGN/@@download/ENCFF002CGN.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF729FCI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGN 1084380 ENCODE Consortium 7fcd9d9db65ebfbf1f7f47839cfc51e8 https://www.encodeproject.org/files/ENCFF729FCI/@@download/ENCFF729FCI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF891QWY bam unfiltered alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NOW, ENCFF643CGH 719191141 ENCODE Processing Pipeline 8ae8ce4210b57e9415f4a0952c00ceab https://www.encodeproject.org/files/ENCFF891QWY/@@download/ENCFF891QWY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF631EDC bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NOW, ENCFF643CGH 488491027 ENCODE Processing Pipeline 79b70a434137d61163259be9b72f2035 https://www.encodeproject.org/files/ENCFF631EDC/@@download/ENCFF631EDC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF341KQG bam unfiltered alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NPB, ENCFF643CGH 1076336301 ENCODE Processing Pipeline a4c9a824c95b4eb9a69d63cf17c8d773 https://www.encodeproject.org/files/ENCFF341KQG/@@download/ENCFF341KQG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF387CSW bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NPB, ENCFF643CGH 623675694 ENCODE Processing Pipeline 0a9bfe8211eb73ae3ad9020e62493d9b https://www.encodeproject.org/files/ENCFF387CSW/@@download/ENCFF387CSW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF689PQQ bam unfiltered alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NOW, ENCFF807MUK 717859966 ENCODE Processing Pipeline 3e1e52333d1980f60fd6023b82cb41c9 https://www.encodeproject.org/files/ENCFF689PQQ/@@download/ENCFF689PQQ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF115HFB bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NOW, ENCFF807MUK 488790698 ENCODE Processing Pipeline aec7b04cf2d0256000634d16d8c3ac92 https://www.encodeproject.org/files/ENCFF115HFB/@@download/ENCFF115HFB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF106HZS bam unfiltered alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NPB, ENCFF807MUK 1075761702 ENCODE Processing Pipeline fdc127b425f7ba7ae9dc43408aaaa310 https://www.encodeproject.org/files/ENCFF106HZS/@@download/ENCFF106HZS.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF837IWA bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NPB, ENCFF807MUK 624076878 ENCODE Processing Pipeline 03abeee9a77933f9e60464f0ba45f10f https://www.encodeproject.org/files/ENCFF837IWA/@@download/ENCFF837IWA.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF263MOU bigWig signal p-value ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF016HFH, ENCFF631EDC 402224026 ENCODE Processing Pipeline 9b574d4cc28ba67c30e963cc0b862610 https://www.encodeproject.org/files/ENCFF263MOU/@@download/ENCFF263MOU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF457EWA bigWig signal p-value ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF016HFH, ENCFF387CSW, ENCFF631EDC 579405944 ENCODE Processing Pipeline 70e3bf3b47fa772b8b7fbbee6392044d https://www.encodeproject.org/files/ENCFF457EWA/@@download/ENCFF457EWA.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF593WMY bigBed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF949XMC 12547129 ENCODE Processing Pipeline 2164f8625720e58085bc30c7affbf8e2 https://www.encodeproject.org/files/ENCFF593WMY/@@download/ENCFF593WMY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF061OCK bigBed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF907CUZ 12714611 ENCODE Processing Pipeline ee01273a519fafdba174279d40a65165 https://www.encodeproject.org/files/ENCFF061OCK/@@download/ENCFF061OCK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF858BWR bigBed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF959DEV 12735672 ENCODE Processing Pipeline e9605159a89d16c85321778d02aabfdf https://www.encodeproject.org/files/ENCFF858BWR/@@download/ENCFF858BWR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF222TUO bed narrowPeak conservative idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF907CUZ, ENCFF949XMC, ENCFF959DEV 460312 ENCODE Processing Pipeline 50e6b75f11e54797558636d758a58253 https://www.encodeproject.org/files/ENCFF222TUO/@@download/ENCFF222TUO.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF982TPG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF085HJD 1253726 ENCODE Processing Pipeline 50c00950d9593e6d9c753b4f05675266 https://www.encodeproject.org/files/ENCFF982TPG/@@download/ENCFF982TPG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF651BCU bigWig signal p-value ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF016HFH, ENCFF387CSW 478381809 ENCODE Processing Pipeline fb80275cccd8363b3fa780ef52f65796 https://www.encodeproject.org/files/ENCFF651BCU/@@download/ENCFF651BCU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF595TSW bigWig fold change over control ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF016HFH, ENCFF631EDC 272512174 ENCODE Processing Pipeline 7f4103069bd9b89f2033b7abd5037369 https://www.encodeproject.org/files/ENCFF595TSW/@@download/ENCFF595TSW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF709BXS bigWig fold change over control ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF016HFH, ENCFF387CSW, ENCFF631EDC 492669759 ENCODE Processing Pipeline 901a922eb6149b12a813ea1c986220cf https://www.encodeproject.org/files/ENCFF709BXS/@@download/ENCFF709BXS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF593MUA bigWig fold change over control ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF016HFH, ENCFF387CSW 285987010 ENCODE Processing Pipeline f412704c85ee785b984208d59de019a1 https://www.encodeproject.org/files/ENCFF593MUA/@@download/ENCFF593MUA.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF949XMC bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF016HFH, ENCFF631EDC 5512598 ENCODE Processing Pipeline d1e399bf0a94046c9f012a32c7e0cae0 https://www.encodeproject.org/files/ENCFF949XMC/@@download/ENCFF949XMC.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF959DEV bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF016HFH, ENCFF387CSW, ENCFF631EDC 6749412 ENCODE Processing Pipeline f4dd4fd11aa7c805642c5bce1e3411b0 https://www.encodeproject.org/files/ENCFF959DEV/@@download/ENCFF959DEV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF243QDN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF222TUO 1134832 ENCODE Processing Pipeline 00f3775507789444e69c78dde72195cc https://www.encodeproject.org/files/ENCFF243QDN/@@download/ENCFF243QDN.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF085HJD bed narrowPeak optimal idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF907CUZ, ENCFF949XMC, ENCFF959DEV 532045 ENCODE Processing Pipeline e52ac73283e3d592443362106359e1ef https://www.encodeproject.org/files/ENCFF085HJD/@@download/ENCFF085HJD.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF907CUZ bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF016HFH, ENCFF387CSW 6439872 ENCODE Processing Pipeline dd1918cd31f0c3ca6574288f7e2e17e7 https://www.encodeproject.org/files/ENCFF907CUZ/@@download/ENCFF907CUZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF712VWE bigWig signal p-value ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF115HFB, ENCFF279XQE, ENCFF837IWA 579896772 ENCODE Processing Pipeline b2474b47171edbe25a48641f14e3506a https://www.encodeproject.org/files/ENCFF712VWE/@@download/ENCFF712VWE.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF095TCV bigWig fold change over control ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF837IWA 289627829 ENCODE Processing Pipeline 81ca22ec4c2565e0201b620679513c4d https://www.encodeproject.org/files/ENCFF095TCV/@@download/ENCFF095TCV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF357DZZ bigWig fold change over control ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF115HFB, ENCFF279XQE, ENCFF837IWA 494797768 ENCODE Processing Pipeline bce952c1beb628df7e5700ee1f5a088e https://www.encodeproject.org/files/ENCFF357DZZ/@@download/ENCFF357DZZ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF798SFE bed narrowPeak optimal idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF167HXK, ENCFF774TTQ, ENCFF973RWT 531262 ENCODE Processing Pipeline 6089801f97aa2770692aaefbb5eaee76 https://www.encodeproject.org/files/ENCFF798SFE/@@download/ENCFF798SFE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF736SFW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF798SFE 1251952 ENCODE Processing Pipeline bfe59298abee693f9bcb7e4ce5fd00cb https://www.encodeproject.org/files/ENCFF736SFW/@@download/ENCFF736SFW.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF953YIY bigWig signal p-value ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF115HFB, ENCFF279XQE 456709083 ENCODE Processing Pipeline 66c12168bbe3fa242ced2bba51b482a0 https://www.encodeproject.org/files/ENCFF953YIY/@@download/ENCFF953YIY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF759HDA bigWig fold change over control ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF115HFB, ENCFF279XQE 275761344 ENCODE Processing Pipeline d342e2fa7f14721510a6327b283d5c2c https://www.encodeproject.org/files/ENCFF759HDA/@@download/ENCFF759HDA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF503XKQ bigWig signal p-value ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF837IWA 518692826 ENCODE Processing Pipeline 7f02af5752d0c42b9e24f231d6369829 https://www.encodeproject.org/files/ENCFF503XKQ/@@download/ENCFF503XKQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF223RFE bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF565YKX 1132694 ENCODE Processing Pipeline d90825765f87c5091a0de7f5975ef21c https://www.encodeproject.org/files/ENCFF223RFE/@@download/ENCFF223RFE.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF774TTQ bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF837IWA 6443551 ENCODE Processing Pipeline 6dbbee2f20fbdb1a359bca7554d57b83 https://www.encodeproject.org/files/ENCFF774TTQ/@@download/ENCFF774TTQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF167HXK bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF115HFB, ENCFF279XQE, ENCFF837IWA 6752090 ENCODE Processing Pipeline b61907ca420bf042f6cd67935dd2b901 https://www.encodeproject.org/files/ENCFF167HXK/@@download/ENCFF167HXK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF759UYJ bigBed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF973RWT 12645608 ENCODE Processing Pipeline dec3436c39ac1662d52ba8dc8ef7eb53 https://www.encodeproject.org/files/ENCFF759UYJ/@@download/ENCFF759UYJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF973RWT bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF115HFB, ENCFF279XQE 5595084 ENCODE Processing Pipeline a59fe2e63e0823f05efc3a9a44446be8 https://www.encodeproject.org/files/ENCFF973RWT/@@download/ENCFF973RWT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF353NIK bigBed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF774TTQ 12711450 ENCODE Processing Pipeline ac53cb0992357ed154ea8f3f2ed8ca1d https://www.encodeproject.org/files/ENCFF353NIK/@@download/ENCFF353NIK.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF144OJC bigBed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF167HXK 12736819 ENCODE Processing Pipeline 4dcd3c63b8fcafe1c4258dcd9a6d3671 https://www.encodeproject.org/files/ENCFF144OJC/@@download/ENCFF144OJC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF565YKX bed narrowPeak conservative idr thresholded peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF167HXK, ENCFF774TTQ, ENCFF973RWT 460131 ENCODE Processing Pipeline c53aa13a9c6186b4b2751d067ce3e7a0 https://www.encodeproject.org/files/ENCFF565YKX/@@download/ENCFF565YKX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000RCO bam alignments ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RDA 1630876486 Richard Myers, HAIB 574b3dcccc2156a54feaafb2161363ce https://www.encodeproject.org/files/ENCFF000RCO/@@download/ENCFF000RCO.bam hg19 released biological replicates with identical biosample ENCFF000RCQ bigBed broadPeak peaks ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UQB 335010 Richard Myers, HAIB 9b5df2c9d5189071926fa7c43ee43b63 https://www.encodeproject.org/files/ENCFF000RCQ/@@download/ENCFF000RCQ.bigBed hg19 released biological replicates with identical biosample ENCFF000RCR bigBed broadPeak peaks ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UQC 122162 Richard Myers, HAIB 1fe351eb545c4759145f8cd9d4e4bf37 https://www.encodeproject.org/files/ENCFF000RCR/@@download/ENCFF000RCR.bigBed hg19 released biological replicates with identical biosample ENCFF000RCS bam alignments ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RCY 1184619894 Richard Myers, HAIB 1a879d7e89fb85b1061616715c98cc7c https://www.encodeproject.org/files/ENCFF000RCS/@@download/ENCFF000RCS.bam hg19 released biological replicates with identical biosample ENCFF000RCU bigWig raw signal ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 1 1 157520843 Richard Myers, HAIB 5086725b6a7acbdfffd164c171fc0c0d https://www.encodeproject.org/files/ENCFF000RCU/@@download/ENCFF000RCU.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RCV bigWig raw signal ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 2 1 135314069 Richard Myers, HAIB a24f4fb2866a85b0f1e8b068a7ce830f https://www.encodeproject.org/files/ENCFF000RCV/@@download/ENCFF000RCV.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RCY fastq reads ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1210275215 Richard Myers, HAIB 3145ca931896a7f3c8f027b43aa60a82 https://www.encodeproject.org/files/ENCFF000RCY/@@download/ENCFF000RCY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF000RDA fastq reads ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1688860604 Richard Myers, HAIB fc94772a886eb777f229962d25af74a1 https://www.encodeproject.org/files/ENCFF000RDA/@@download/ENCFF000RDA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UQB bed broadPeak peaks ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 1 1 172660 Richard Myers, HAIB ebf4ca0fcf4cd70c4da97e7589962fcd https://www.encodeproject.org/files/ENCFF001UQB/@@download/ENCFF001UQB.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UQC bed broadPeak peaks ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 2 1 41450 Richard Myers, HAIB 7bfc7f181e037df652f0ea4acf104979 https://www.encodeproject.org/files/ENCFF001UQC/@@download/ENCFF001UQC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RUU bigWig base overlap signal ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 107167627 Vishwanath Iyer, UTA 6b7e43c82e2615417557623cf43f945e https://www.encodeproject.org/files/ENCFF000RUU/@@download/ENCFF000RUU.bigWig hg19 released low read length, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF000RUV bam alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RVF 655643056 Vishwanath Iyer, UTA b2253794c1f7fa0a60c442a3b35a96cc https://www.encodeproject.org/files/ENCFF000RUV/@@download/ENCFF000RUV.bam hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF000RUW bigBed narrowPeak peaks ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USZ 1908893 Vishwanath Iyer, UTA 219168a13f1cb46cb524a9a18a13817b https://www.encodeproject.org/files/ENCFF000RUW/@@download/ENCFF000RUW.bigBed hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF000RUX bigWig signal ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 3140848567 Vishwanath Iyer, UTA 10293e34b061c92348c8eeb2c40b2795 https://www.encodeproject.org/files/ENCFF000RUX/@@download/ENCFF000RUX.bigWig hg19 released low read length, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF000RVF fastq reads ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1064623040 Vishwanath Iyer, UTA 760dbd85983c80cae6f30ca06d98d94e https://www.encodeproject.org/files/ENCFF000RVF/@@download/ENCFF000RVF.fastq.gz Illumina Genome Analyzer /files/ENCFF000RVO/ released low read length, mild to moderate bottlenecking insufficient read depth ENCFF001USZ bed narrowPeak peaks ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 954217 Vishwanath Iyer, UTA 7d4ce26014fe47628cf45bf77bb5c3b2 https://www.encodeproject.org/files/ENCFF001USZ/@@download/ENCFF001USZ.bed.gz hg19 released low read length, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF002DAZ bed narrowPeak optimal idr thresholded peaks ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 98320 ENCODE Consortium Analysis Working Group ed57885cdc2e621df9fe2934c4f4bd93 https://www.encodeproject.org/files/ENCFF002DAZ/@@download/ENCFF002DAZ.bed.gz hg19 released low read length, mild to moderate bottlenecking missing derived_from insufficient read depth ENCFF650GDC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAZ 215853 ENCODE Consortium 4d91fa42def4814f7b8db6d2dc77f82b https://www.encodeproject.org/files/ENCFF650GDC/@@download/ENCFF650GDC.bigBed hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF838YUD bam unfiltered alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RVF, ENCFF643CGH 1297267546 ENCODE Processing Pipeline a01d64ed7e30e6df45125e81adc09b43 https://www.encodeproject.org/files/ENCFF838YUD/@@download/ENCFF838YUD.bam GRCh38 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF383NUB bam unfiltered alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RVF, ENCFF807MUK 1293453910 ENCODE Processing Pipeline f87c765a430acc9e562d7feb289c9a72 https://www.encodeproject.org/files/ENCFF383NUB/@@download/ENCFF383NUB.bam hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF997MKZ bam alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RVF, ENCFF643CGH 492668957 ENCODE Processing Pipeline a405ea91d7bcbc9ff3e731222d17f298 https://www.encodeproject.org/files/ENCFF997MKZ/@@download/ENCFF997MKZ.bam GRCh38 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF257ZTK bam alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RVF, ENCFF807MUK 492881446 ENCODE Processing Pipeline 2df8fd56be6ce8f792f69ed6199aa73f https://www.encodeproject.org/files/ENCFF257ZTK/@@download/ENCFF257ZTK.bam hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF000QXF bigBed broadPeak peaks ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UOZ 141680 Richard Myers, HAIB e5d9c9c345fab329b65130e87603b42d https://www.encodeproject.org/files/ENCFF000QXF/@@download/ENCFF000QXF.bigBed hg19 released biological replicates with identical biosample ENCFF000QXG bigBed broadPeak peaks ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPA 148805 Richard Myers, HAIB c29fc7e818baced674c91963c53f5cfa https://www.encodeproject.org/files/ENCFF000QXG/@@download/ENCFF000QXG.bigBed hg19 released biological replicates with identical biosample ENCFF000QXH bam alignments ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QXR 1658124295 Richard Myers, HAIB 13be690710870ec09c6b1824f0340ae4 https://www.encodeproject.org/files/ENCFF000QXH/@@download/ENCFF000QXH.bam hg19 released biological replicates with identical biosample ENCFF000QXI bam alignments ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QXU 1507469501 Richard Myers, HAIB 30b79f789e786c968272e127474f54e1 https://www.encodeproject.org/files/ENCFF000QXI/@@download/ENCFF000QXI.bam hg19 released biological replicates with identical biosample ENCFF000QXJ bigWig raw signal ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 225781351 Richard Myers, HAIB c1ad1ecbdd0b489eb4eb8c2db0013023 https://www.encodeproject.org/files/ENCFF000QXJ/@@download/ENCFF000QXJ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QXK bigWig raw signal ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 150374662 Richard Myers, HAIB fced61ad3108977508b0a6a16a74d732 https://www.encodeproject.org/files/ENCFF000QXK/@@download/ENCFF000QXK.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QXR fastq reads ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1643888406 Richard Myers, HAIB 3d9bd6ab1d6f5efaae3b97d65e5c3a67 https://www.encodeproject.org/files/ENCFF000QXR/@@download/ENCFF000QXR.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF000QXU fastq reads ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1537620537 Richard Myers, HAIB ab2d9279c7ca3c4d072ce6bb1d7e0ecd https://www.encodeproject.org/files/ENCFF000QXU/@@download/ENCFF000QXU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UOZ bed broadPeak peaks ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 56141 Richard Myers, HAIB 33200638e57e4ae4dc9e6982b0e3bf9e https://www.encodeproject.org/files/ENCFF001UOZ/@@download/ENCFF001UOZ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UPA bed broadPeak peaks ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 59414 Richard Myers, HAIB 58756b471da92d0b94f3ee2b6a463cc5 https://www.encodeproject.org/files/ENCFF001UPA/@@download/ENCFF001UPA.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RXI bam alignments ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RXO 568634548 Vishwanath Iyer, UTA a101acf7b4e950d4a25f3cd6145c79e9 https://www.encodeproject.org/files/ENCFF000RXI/@@download/ENCFF000RXI.bam hg19 released biological replicates with identical biosample ENCFF000RXJ bam alignments ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RXS 425974314 Vishwanath Iyer, UTA 52200cbf05b45620110631c7b0bf6100 https://www.encodeproject.org/files/ENCFF000RXJ/@@download/ENCFF000RXJ.bam hg19 released biological replicates with identical biosample ENCFF000RXK bigWig base overlap signal ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1000255421 Vishwanath Iyer, UTA 4a7852e5816ebb8eedf4d33f619733f5 https://www.encodeproject.org/files/ENCFF000RXK/@@download/ENCFF000RXK.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RXL bigBed narrowPeak peaks ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTH 2120030 Vishwanath Iyer, UTA 4f526b84df335081e246ef9b85308035 https://www.encodeproject.org/files/ENCFF000RXL/@@download/ENCFF000RXL.bigBed hg19 released biological replicates with identical biosample ENCFF000RXN bigWig signal ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 3884582441 Vishwanath Iyer, UTA b55ddd53160ae830f013fdfd6bd1671c https://www.encodeproject.org/files/ENCFF000RXN/@@download/ENCFF000RXN.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RXO fastq reads ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 654876001 Vishwanath Iyer, UTA e04f23e301df64f315480f0fde7b55b3 https://www.encodeproject.org/files/ENCFF000RXO/@@download/ENCFF000RXO.fastq.gz Illumina Genome Analyzer /files/ENCFF000RYG/ released biological replicates with identical biosample ENCFF000RXS fastq reads ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 480587132 Vishwanath Iyer, UTA f11e4cc0e0e2305c6eaf3a97d861b8ae https://www.encodeproject.org/files/ENCFF000RXS/@@download/ENCFF000RXS.fastq.gz Illumina Genome Analyzer /files/ENCFF000RYG/ released biological replicates with identical biosample ENCFF001UTH bed narrowPeak peaks ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1265974 Vishwanath Iyer, UTA f8f3b52f1d1a700e914ecf1756f6cea7 https://www.encodeproject.org/files/ENCFF001UTH/@@download/ENCFF001UTH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF567MSF fastq reads ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 1 50 single-ended 1810049689 Richard Myers, HAIB d8c6e852e36fb7f9aef603a96119b333 https://www.encodeproject.org/files/ENCFF567MSF/@@download/ENCFF567MSF.fastq.gz Illumina HiSeq 2000 /files/ENCFF123QZN/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF051KMB fastq reads ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 1 50 single-ended 1068513643 Richard Myers, HAIB 682ac2e66bc05666dc21048e762f3605 https://www.encodeproject.org/files/ENCFF051KMB/@@download/ENCFF051KMB.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF895OPN bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF567MSF, ENCFF807MUK 1384684414 ENCODE Processing Pipeline f296cf6b87ab5d090f02ea20a0f1ab37 https://www.encodeproject.org/files/ENCFF895OPN/@@download/ENCFF895OPN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF180TKR bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF051KMB, ENCFF807MUK 856714910 ENCODE Processing Pipeline 0337bed65675d5515c0b98e8e887148f https://www.encodeproject.org/files/ENCFF180TKR/@@download/ENCFF180TKR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF642QCG bigWig signal p-value ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 1127059457 ENCODE Processing Pipeline fe48f7287271cd9813ed616e70a73e1f https://www.encodeproject.org/files/ENCFF642QCG/@@download/ENCFF642QCG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF214PZW bigWig fold change over control ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 1212853412 ENCODE Processing Pipeline 3a4b84a8f2574f8ebd172d18bbac40b1 https://www.encodeproject.org/files/ENCFF214PZW/@@download/ENCFF214PZW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF007XRE bam unfiltered alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF051KMB, ENCFF643CGH 1124797700 ENCODE Processing Pipeline 0536e2c5f1f45965b79fbafb7c6c93ea https://www.encodeproject.org/files/ENCFF007XRE/@@download/ENCFF007XRE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF716PKD bam unfiltered alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF567MSF, ENCFF643CGH 1867907232 ENCODE Processing Pipeline adb79e360533a322bdd4c13474421ee4 https://www.encodeproject.org/files/ENCFF716PKD/@@download/ENCFF716PKD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF523FGX bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF051KMB, ENCFF643CGH 856515060 ENCODE Processing Pipeline 55d0a053bfe532eb2cad1af8350dfcfa https://www.encodeproject.org/files/ENCFF523FGX/@@download/ENCFF523FGX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF503TSN bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF567MSF, ENCFF643CGH 1384543801 ENCODE Processing Pipeline 836c43e557c985ecac34a6c31d0f9c5e https://www.encodeproject.org/files/ENCFF503TSN/@@download/ENCFF503TSN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF009HRO bigWig signal p-value ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF337WHA, ENCFF523FGX, ENCFF610PNU 809696335 ENCODE Processing Pipeline cc8f35a65e739dfa9cd06e5ca3a168de https://www.encodeproject.org/files/ENCFF009HRO/@@download/ENCFF009HRO.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF413TOT bigWig signal p-value ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF337WHA, ENCFF503TSN, ENCFF610PNU 933798032 ENCODE Processing Pipeline 4da2d257f140b6119087d538242850b5 https://www.encodeproject.org/files/ENCFF413TOT/@@download/ENCFF413TOT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF816UQX bigWig fold change over control ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF337WHA, ENCFF503TSN, ENCFF523FGX, ENCFF610PNU 1174570404 ENCODE Processing Pipeline 87faced65861b0615e31197370f1c0ac https://www.encodeproject.org/files/ENCFF816UQX/@@download/ENCFF816UQX.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF598YNF bigWig signal p-value ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF337WHA, ENCFF503TSN, ENCFF523FGX, ENCFF610PNU 964538473 ENCODE Processing Pipeline 2d0582f747e269c10a888ee718d68382 https://www.encodeproject.org/files/ENCFF598YNF/@@download/ENCFF598YNF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF089XWZ bigWig fold change over control ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF337WHA, ENCFF523FGX, ENCFF610PNU 678963283 ENCODE Processing Pipeline 3fa7030fa9590dd95b0bed43c207ae86 https://www.encodeproject.org/files/ENCFF089XWZ/@@download/ENCFF089XWZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF964PDF bigWig fold change over control ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF337WHA, ENCFF503TSN, ENCFF610PNU 879365095 ENCODE Processing Pipeline 38a0423fb43a13e5b1c9ecf3e105336e https://www.encodeproject.org/files/ENCFF964PDF/@@download/ENCFF964PDF.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF004BWM bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF337WHA, ENCFF503TSN, ENCFF610PNU 6529445 ENCODE Processing Pipeline 9ae4c67c312c1dc06873aad30e8e5311 https://www.encodeproject.org/files/ENCFF004BWM/@@download/ENCFF004BWM.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF071EJZ bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF337WHA, ENCFF503TSN, ENCFF523FGX, ENCFF610PNU 6785934 ENCODE Processing Pipeline 8db5c586dc12e365809e441b557aed95 https://www.encodeproject.org/files/ENCFF071EJZ/@@download/ENCFF071EJZ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF251FHE bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF337WHA, ENCFF523FGX, ENCFF610PNU 6300172 ENCODE Processing Pipeline bed66c0db958488887add86a84fc8955 https://www.encodeproject.org/files/ENCFF251FHE/@@download/ENCFF251FHE.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF698XXA bigBed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF251FHE 13133093 ENCODE Processing Pipeline ae3cbbcf62365704c6c67af8b011570c https://www.encodeproject.org/files/ENCFF698XXA/@@download/ENCFF698XXA.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF142QDE bigBed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF071EJZ 13377993 ENCODE Processing Pipeline acb353b8109febdc58914e6a7c0f2c47 https://www.encodeproject.org/files/ENCFF142QDE/@@download/ENCFF142QDE.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF660CGM bigBed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF004BWM 13374326 ENCODE Processing Pipeline efbb0b3f6d019a0ad8f25ba677f05531 https://www.encodeproject.org/files/ENCFF660CGM/@@download/ENCFF660CGM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF928TPD bigBed narrowPeak optimal idr thresholded peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF978TMH 2191257 ENCODE Processing Pipeline d7255064ad573e6d9bf88dc08c4d3a90 https://www.encodeproject.org/files/ENCFF928TPD/@@download/ENCFF928TPD.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF978TMH bed narrowPeak optimal idr thresholded peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF004BWM, ENCFF071EJZ, ENCFF251FHE, ENCFF419RSJ 1278518 ENCODE Processing Pipeline 28113d1c07417ed313e38fb9ae664486 https://www.encodeproject.org/files/ENCFF978TMH/@@download/ENCFF978TMH.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF767LFJ bam unfiltered alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF051KMB, ENCFF807MUK 1120458069 ENCODE Processing Pipeline 84b2275d4728a58d2be8a59f55527d71 https://www.encodeproject.org/files/ENCFF767LFJ/@@download/ENCFF767LFJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF990ROM bam unfiltered alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF567MSF, ENCFF807MUK 1860573773 ENCODE Processing Pipeline f213e17de30cc36113d86c3bcd7eaf66 https://www.encodeproject.org/files/ENCFF990ROM/@@download/ENCFF990ROM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF306LPG bigWig signal p-value ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV 815451367 ENCODE Processing Pipeline 9cad730a8464f5545542d285eb640fb2 https://www.encodeproject.org/files/ENCFF306LPG/@@download/ENCFF306LPG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF881EJW bed narrowPeak optimal idr thresholded peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF001TDO, ENCFF204PED, ENCFF502LWJ, ENCFF512BFW 1278434 ENCODE Processing Pipeline 9db9e2a5dead65918863cdd899a150cd https://www.encodeproject.org/files/ENCFF881EJW/@@download/ENCFF881EJW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF049EDG bigWig signal p-value ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 1026251789 ENCODE Processing Pipeline 2972c5c7eb7e502092cec482563a1652 https://www.encodeproject.org/files/ENCFF049EDG/@@download/ENCFF049EDG.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF345GSK bigWig fold change over control ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 876982658 ENCODE Processing Pipeline d38c2424128783959143ae88ebc7ae15 https://www.encodeproject.org/files/ENCFF345GSK/@@download/ENCFF345GSK.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF364HVW bigWig fold change over control ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV 678956919 ENCODE Processing Pipeline 8ad009dfbe6e876db01fbc6ece5e0c06 https://www.encodeproject.org/files/ENCFF364HVW/@@download/ENCFF364HVW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF502LWJ bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV 6332253 ENCODE Processing Pipeline 1b4696ff790ef79b25a9eb0f2485d387 https://www.encodeproject.org/files/ENCFF502LWJ/@@download/ENCFF502LWJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF512BFW bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 6540785 ENCODE Processing Pipeline 7a7510bbc9d003ee483eea0ec474d440 https://www.encodeproject.org/files/ENCFF512BFW/@@download/ENCFF512BFW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF917GKE bigBed narrowPeak optimal idr thresholded peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF881EJW 2189051 ENCODE Processing Pipeline 3e8ab641dd5c0f14cd3d40349dd4932a https://www.encodeproject.org/files/ENCFF917GKE/@@download/ENCFF917GKE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF204PED bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 6787109 ENCODE Processing Pipeline edf4a66c61ad4652d7cad2e73a021105 https://www.encodeproject.org/files/ENCFF204PED/@@download/ENCFF204PED.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF829JUE bigBed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF502LWJ 13134304 ENCODE Processing Pipeline 4107be03339b854dccdf992e5e1a11c7 https://www.encodeproject.org/files/ENCFF829JUE/@@download/ENCFF829JUE.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF074GHK bigBed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF512BFW 13381847 ENCODE Processing Pipeline 88d3a272ad02b1cfd16da378df219e0c https://www.encodeproject.org/files/ENCFF074GHK/@@download/ENCFF074GHK.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF598ISD bigBed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1, 2 ENCFF204PED 13372638 ENCODE Processing Pipeline e9fc29794ef19999f211433380ecf985 https://www.encodeproject.org/files/ENCFF598ISD/@@download/ENCFF598ISD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF000YUX bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YVV 127087551 Michael Snyder, Stanford 124c0dc495c1c7fac48201a79590189b https://www.encodeproject.org/files/ENCFF000YUX/@@download/ENCFF000YUX.bam hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YUY bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YVA, ENCFF000YVB 133241585 Michael Snyder, Stanford 746d572096cd32f65477ce34c8e12d30 https://www.encodeproject.org/files/ENCFF000YUY/@@download/ENCFF000YUY.bam hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YUZ bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNZ 943187 Michael Snyder, Stanford 99c74c7cc4c0d94217bdc3d1358bacc4 https://www.encodeproject.org/files/ENCFF000YUZ/@@download/ENCFF000YUZ.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YVA fastq reads ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 300001902 Michael Snyder, Stanford fb27a348287213d17a1d5282e8fe1abe https://www.encodeproject.org/files/ENCFF000YVA/@@download/ENCFF000YVA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released mild to moderate bottlenecking, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YVC bigWig signal ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 85454639 Michael Snyder, Stanford 4a56cf0ff6c926957a6f035dcf4eaa3f https://www.encodeproject.org/files/ENCFF000YVC/@@download/ENCFF000YVC.bigWig hg19 archived mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YVV fastq reads ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 671619381 Michael Snyder, Stanford 86979261bda41907cc8970c2f59e1352 https://www.encodeproject.org/files/ENCFF000YVV/@@download/ENCFF000YVV.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released mild to moderate bottlenecking, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF001VNZ bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 373965 Michael Snyder, Stanford 8c433880d36d2a0b9ffee991cba1904e https://www.encodeproject.org/files/ENCFF001VNZ/@@download/ENCFF001VNZ.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF002CXJ bed narrowPeak optimal idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 207601 ENCODE Consortium Analysis Working Group 7ba84d9348d64c9aa4530e5b7b77c40e https://www.encodeproject.org/files/ENCFF002CXJ/@@download/ENCFF002CXJ.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YVB fastq reads ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 233083006 Michael Snyder, Stanford ae431f2a97646e5515ecc2734e7278df https://www.encodeproject.org/files/ENCFF000YVB/@@download/ENCFF000YVB.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released mild to moderate bottlenecking, inconsistent control read length, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF954VKV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXJ 477057 ENCODE Consortium facbb97b7402521117c882e8935a0728 https://www.encodeproject.org/files/ENCFF954VKV/@@download/ENCFF954VKV.bigBed hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF068JXL bam unfiltered alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVA, ENCFF000YVB, ENCFF643CGH 515736767 ENCODE Processing Pipeline 7366fa4faf57487f4a083a21f98c91dd https://www.encodeproject.org/files/ENCFF068JXL/@@download/ENCFF068JXL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF817VBY bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YVV, ENCFF643CGH 158418640 ENCODE Processing Pipeline cb38d29390d3266bc0c32826653a9dc4 https://www.encodeproject.org/files/ENCFF817VBY/@@download/ENCFF817VBY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF931ZBX bam unfiltered alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVA, ENCFF000YVB, ENCFF807MUK 515047417 ENCODE Processing Pipeline c5f592c5cf63bd40d71c0b8d493f713e https://www.encodeproject.org/files/ENCFF931ZBX/@@download/ENCFF931ZBX.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF076LDA bam unfiltered alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YVV, ENCFF807MUK 683007394 ENCODE Processing Pipeline 7de3d79545b85d409be4a1ea9749c90c https://www.encodeproject.org/files/ENCFF076LDA/@@download/ENCFF076LDA.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF161SAR bigWig fold change over control ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF817VBY 110424185 ENCODE Processing Pipeline b6d27a6132591569b3a2e82d52019fd4 https://www.encodeproject.org/files/ENCFF161SAR/@@download/ENCFF161SAR.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF953KUA bigWig signal p-value ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF267XWV, ENCFF332BFE 322575934 ENCODE Processing Pipeline 744e76dbcbcd14794ad7f9d6801e49a4 https://www.encodeproject.org/files/ENCFF953KUA/@@download/ENCFF953KUA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF234JFJ bigWig signal p-value ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF267XWV, ENCFF332BFE, ENCFF817VBY 341118763 ENCODE Processing Pipeline ff629d7655492bda07feb8ebb214a947 https://www.encodeproject.org/files/ENCFF234JFJ/@@download/ENCFF234JFJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF097JMC bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF267XWV, ENCFF332BFE, ENCFF817VBY 2477891 ENCODE Processing Pipeline cff121e3c1e381d27b3704b5dde68d1a https://www.encodeproject.org/files/ENCFF097JMC/@@download/ENCFF097JMC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF267XWV bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVA, ENCFF000YVB, ENCFF643CGH 146873192 ENCODE Processing Pipeline b6ef47652bb0ead53837797291bf4ee2 https://www.encodeproject.org/files/ENCFF267XWV/@@download/ENCFF267XWV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF767RBF bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVA, ENCFF000YVB, ENCFF807MUK 147080853 ENCODE Processing Pipeline 80688aa914da300f6fa8f792d1d21ffa https://www.encodeproject.org/files/ENCFF767RBF/@@download/ENCFF767RBF.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF838ILZ bam unfiltered alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YVV, ENCFF643CGH 684400892 ENCODE Processing Pipeline 9c59363192732dcb66f5794d96dfb363 https://www.encodeproject.org/files/ENCFF838ILZ/@@download/ENCFF838ILZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF198JIR bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YVV, ENCFF807MUK 158647685 ENCODE Processing Pipeline c33afa34d6b28256d1c01324d46df36f https://www.encodeproject.org/files/ENCFF198JIR/@@download/ENCFF198JIR.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF290RAY bigWig signal p-value ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF817VBY 318743339 ENCODE Processing Pipeline 623bf39578488178729febde87744a03 https://www.encodeproject.org/files/ENCFF290RAY/@@download/ENCFF290RAY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF972KIO bigWig fold change over control ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF267XWV, ENCFF332BFE 95548265 ENCODE Processing Pipeline aed5b22398da334e41d49aa2aeeef77e https://www.encodeproject.org/files/ENCFF972KIO/@@download/ENCFF972KIO.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF998IRY bigWig fold change over control ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF123YHB, ENCFF267XWV, ENCFF332BFE, ENCFF817VBY 184737480 ENCODE Processing Pipeline dc86f07bdab611775a70a7ec9aa90db2 https://www.encodeproject.org/files/ENCFF998IRY/@@download/ENCFF998IRY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF739OEE bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF123YHB, ENCFF267XWV, ENCFF332BFE 1057883 ENCODE Processing Pipeline a56c1106500d5e5b6f9599fc8fa5c9e2 https://www.encodeproject.org/files/ENCFF739OEE/@@download/ENCFF739OEE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF182SIK bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF097JMC 6085786 ENCODE Processing Pipeline 427de29f6374e67c9eeab06ce6f3a9f9 https://www.encodeproject.org/files/ENCFF182SIK/@@download/ENCFF182SIK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF419XYC bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF753UAY 2306481 ENCODE Processing Pipeline 4229204538d129139e21d09d90b24ffd https://www.encodeproject.org/files/ENCFF419XYC/@@download/ENCFF419XYC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF753UAY bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF123YHB, ENCFF332BFE, ENCFF817VBY 1031635 ENCODE Processing Pipeline c85b2e820af8b6fabaec0539fd7cb899 https://www.encodeproject.org/files/ENCFF753UAY/@@download/ENCFF753UAY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF699OWJ bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF739OEE 2288966 ENCODE Processing Pipeline e38fb3e88061954c11b3e7b73d2e25c8 https://www.encodeproject.org/files/ENCFF699OWJ/@@download/ENCFF699OWJ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF009NXK bed narrowPeak optimal idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF097JMC, ENCFF419RSJ, ENCFF739OEE, ENCFF753UAY 163438 ENCODE Processing Pipeline 6f6bd74c9e69027ea71f11ea2266e469 https://www.encodeproject.org/files/ENCFF009NXK/@@download/ENCFF009NXK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF897LDW bed narrowPeak conservative idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF097JMC, ENCFF419RSJ, ENCFF739OEE, ENCFF753UAY 152894 ENCODE Processing Pipeline 51546032b6e853dda3d59c3856a8e7dc https://www.encodeproject.org/files/ENCFF897LDW/@@download/ENCFF897LDW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF791BEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF009NXK 316692 ENCODE Processing Pipeline e878cec8875799e8201d97490fbb41db https://www.encodeproject.org/files/ENCFF791BEB/@@download/ENCFF791BEB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF781SST bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF897LDW 301967 ENCODE Processing Pipeline f5d0792712d7d356f1b7d8cd496c08c3 https://www.encodeproject.org/files/ENCFF781SST/@@download/ENCFF781SST.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF532COO bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF570JVX 2332300 ENCODE Processing Pipeline 8c5ff46a6393374c3ba2a1f9c6e45f74 https://www.encodeproject.org/files/ENCFF532COO/@@download/ENCFF532COO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF113PMT bed narrowPeak optimal idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF180NNF, ENCFF193FRQ, ENCFF570JVX 159170 ENCODE Processing Pipeline 17bb2e1d538afdee207dfa2b58c5fa95 https://www.encodeproject.org/files/ENCFF113PMT/@@download/ENCFF113PMT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF110HWZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113PMT 310785 ENCODE Processing Pipeline 17ff5452708e8fa43b6333ebe8d8925a https://www.encodeproject.org/files/ENCFF110HWZ/@@download/ENCFF110HWZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF180NNF bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 1061408 ENCODE Processing Pipeline 5c9072fe36bd7389f2865e50f52d2cf5 https://www.encodeproject.org/files/ENCFF180NNF/@@download/ENCFF180NNF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF193FRQ bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 2482503 ENCODE Processing Pipeline 21f7fdf7937f1054195cfa1370ae3445 https://www.encodeproject.org/files/ENCFF193FRQ/@@download/ENCFF193FRQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF676RBE bigWig signal p-value ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 348351615 ENCODE Processing Pipeline dcece7b770318cc945f67b1dbd8d6b37 https://www.encodeproject.org/files/ENCFF676RBE/@@download/ENCFF676RBE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF980CRX bigWig fold change over control ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 95252901 ENCODE Processing Pipeline 1faa8c5220b7d6b4ee1f1555e02a033b https://www.encodeproject.org/files/ENCFF980CRX/@@download/ENCFF980CRX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF570JVX bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ 1050923 ENCODE Processing Pipeline ca2172ab129944366ef6e528a0d83bcf https://www.encodeproject.org/files/ENCFF570JVX/@@download/ENCFF570JVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF318PKN bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF193FRQ 6091864 ENCODE Processing Pipeline a0a1ca6d3adc1b859ec0a5988bc04eb2 https://www.encodeproject.org/files/ENCFF318PKN/@@download/ENCFF318PKN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF413KEY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF561PGE 302040 ENCODE Processing Pipeline e5d06b7ae42d3c956e589d9efd30dc2e https://www.encodeproject.org/files/ENCFF413KEY/@@download/ENCFF413KEY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF670OTV bigWig signal p-value ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ 325637002 ENCODE Processing Pipeline 12e988cb86e2f3883ac73e9988f078f9 https://www.encodeproject.org/files/ENCFF670OTV/@@download/ENCFF670OTV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF547XEW bigWig fold change over control ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 186238421 ENCODE Processing Pipeline 00e2acb35cfcfd188ffd3361c1e91d3a https://www.encodeproject.org/files/ENCFF547XEW/@@download/ENCFF547XEW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF789LYZ bigWig fold change over control ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ 109892474 ENCODE Processing Pipeline da9328e8e21bde01a0878ae7a0b2af10 https://www.encodeproject.org/files/ENCFF789LYZ/@@download/ENCFF789LYZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF862BEX bigWig signal p-value ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 324545404 ENCODE Processing Pipeline 090dff1dde08a19a223ac97dd5fac76e https://www.encodeproject.org/files/ENCFF862BEX/@@download/ENCFF862BEX.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF143FUD bigBed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF180NNF 2292966 ENCODE Processing Pipeline e2020fdf656799ede0f8de6d96bd9145 https://www.encodeproject.org/files/ENCFF143FUD/@@download/ENCFF143FUD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF561PGE bed narrowPeak conservative idr thresholded peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF180NNF, ENCFF193FRQ, ENCFF570JVX 153122 ENCODE Processing Pipeline 6971511950353396c05caf809bc2892f https://www.encodeproject.org/files/ENCFF561PGE/@@download/ENCFF561PGE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF244AUG fastq reads ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 2 ENCFF207HTT 3003063623 Michael Snyder, Stanford a87023b12770e4a4b148fc684b99daf1 SRA:SRR6212994 https://www.encodeproject.org/files/ENCFF244AUG/@@download/ENCFF244AUG.fastq.gz Illumina HiSeq 2000 /files/ENCFF860HKS/ released antibody characterized with exemption ENCFF207HTT fastq reads ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 1 100 paired-ended 1 ENCFF244AUG 2949683879 Michael Snyder, Stanford dd62a77950259f308136783f50785157 SRA:SRR6212994 https://www.encodeproject.org/files/ENCFF207HTT/@@download/ENCFF207HTT.fastq.gz Illumina HiSeq 2000 /files/ENCFF355CRY/ released antibody characterized with exemption ENCFF781QNA bam unfiltered alignments ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF207HTT, ENCFF244AUG, ENCFF807MUK 6246905827 ENCODE Processing Pipeline b965d5697fd030c8438e2c307e08ec10 https://www.encodeproject.org/files/ENCFF781QNA/@@download/ENCFF781QNA.bam hg19 released antibody characterized with exemption ENCFF204VWV bam unfiltered alignments ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF207HTT, ENCFF244AUG, ENCFF643CGH 6249393343 ENCODE Processing Pipeline f0ee003bfc88f2792a2467accb601b4f https://www.encodeproject.org/files/ENCFF204VWV/@@download/ENCFF204VWV.bam GRCh38 released antibody characterized with exemption ENCFF651ZZS bam alignments ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF207HTT, ENCFF244AUG, ENCFF643CGH 5086180150 ENCODE Processing Pipeline 92c0394fa4153ff6c93f7e0a2e5730a1 https://www.encodeproject.org/files/ENCFF651ZZS/@@download/ENCFF651ZZS.bam GRCh38 released antibody characterized with exemption ENCFF508CNG bam alignments ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF207HTT, ENCFF244AUG, ENCFF807MUK 5077978418 ENCODE Processing Pipeline 8d9c29f1cc09c29c8ec58b3c5970b66e https://www.encodeproject.org/files/ENCFF508CNG/@@download/ENCFF508CNG.bam hg19 released antibody characterized with exemption ENCFF599LUW bigWig signal p-value ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF435OCU, ENCFF508CNG 1057277207 ENCODE Processing Pipeline 10af626285de9ba967cbdeaf297e8f60 https://www.encodeproject.org/files/ENCFF599LUW/@@download/ENCFF599LUW.bigWig hg19 released antibody characterized with exemption ENCFF963ZQQ bigWig fold change over control ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF435OCU, ENCFF508CNG 1059385539 ENCODE Processing Pipeline cb4d73020bfbd65c30994cb462dca063 https://www.encodeproject.org/files/ENCFF963ZQQ/@@download/ENCFF963ZQQ.bigWig hg19 released antibody characterized with exemption ENCFF437LBW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF001TDO, ENCFF325IOO 732551 ENCODE Processing Pipeline aaea339e646ae7fdf4591bd0072188fb https://www.encodeproject.org/files/ENCFF437LBW/@@download/ENCFF437LBW.bed.gz hg19 released antibody characterized with exemption ENCFF190RFM bigBed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF325IOO 13819392 ENCODE Processing Pipeline 9a9e740478aca4a4ef2aa41cad9493e2 https://www.encodeproject.org/files/ENCFF190RFM/@@download/ENCFF190RFM.bigBed hg19 released antibody characterized with exemption ENCFF325IOO bed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF435OCU, ENCFF508CNG 6480989 ENCODE Processing Pipeline d1c0ba9640cf006ade1f4b49893ae397 https://www.encodeproject.org/files/ENCFF325IOO/@@download/ENCFF325IOO.bed.gz hg19 released antibody characterized with exemption ENCFF533KRA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF437LBW 1228577 ENCODE Processing Pipeline fafa6fcae8f7b3f77b1687882243fe8f https://www.encodeproject.org/files/ENCFF533KRA/@@download/ENCFF533KRA.bigBed hg19 released antibody characterized with exemption ENCFF538XAD bigWig signal p-value ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF395VIK, ENCFF651ZZS 1057948725 ENCODE Processing Pipeline b19e3a5b5aea342cb392ce924d07105a https://www.encodeproject.org/files/ENCFF538XAD/@@download/ENCFF538XAD.bigWig GRCh38 released antibody characterized with exemption ENCFF815EBG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF153EBU 1279321 ENCODE Processing Pipeline 8015619fcc9472bdcf334d1d2ae9ee04 https://www.encodeproject.org/files/ENCFF815EBG/@@download/ENCFF815EBG.bigBed GRCh38 released antibody characterized with exemption ENCFF994QQT bed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF395VIK, ENCFF651ZZS 6565167 ENCODE Processing Pipeline 6c0302db97642c76eb0a5b12dc6d3494 https://www.encodeproject.org/files/ENCFF994QQT/@@download/ENCFF994QQT.bed.gz GRCh38 released antibody characterized with exemption ENCFF785HZD bigBed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF994QQT 13932266 ENCODE Processing Pipeline 115a1ef70c7ae197a001f650d343845c https://www.encodeproject.org/files/ENCFF785HZD/@@download/ENCFF785HZD.bigBed GRCh38 released antibody characterized with exemption ENCFF153EBU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF419RSJ, ENCFF994QQT 764952 ENCODE Processing Pipeline 12a5fb124bd3a5656a1988de790e7ec8 https://www.encodeproject.org/files/ENCFF153EBU/@@download/ENCFF153EBU.bed.gz GRCh38 released antibody characterized with exemption ENCFF114RHO bigWig fold change over control ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF395VIK, ENCFF651ZZS 1059775567 ENCODE Processing Pipeline e2f924b9f2eda74bc19d8a39612aed4d https://www.encodeproject.org/files/ENCFF114RHO/@@download/ENCFF114RHO.bigWig GRCh38 released antibody characterized with exemption ENCFF996ELT bam unfiltered alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF094LXX, ENCFF807MUK 1728255876 ENCODE Processing Pipeline 6e04a151b9913d7d5fdf50860aea7d9c https://www.encodeproject.org/files/ENCFF996ELT/@@download/ENCFF996ELT.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF549MBD bam unfiltered alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF522PUA, ENCFF807MUK 959483443 ENCODE Processing Pipeline 54bd21bc473f9a685a1adafaad5590ed https://www.encodeproject.org/files/ENCFF549MBD/@@download/ENCFF549MBD.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF522PUA fastq reads ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 1 50 single-ended 867485222 Richard Myers, HAIB 45ae9e534c1eb3553bdf36d3f4a7d06c SRA:SRR5338830 https://www.encodeproject.org/files/ENCFF522PUA/@@download/ENCFF522PUA.fastq.gz Illumina HiSeq 2000 /files/ENCFF086CFB/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF094LXX fastq reads ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 1 50 single-ended 1547847483 Richard Myers, HAIB 88b1abb0065767cea875f079baa79a82 SRA:SRR5338829 https://www.encodeproject.org/files/ENCFF094LXX/@@download/ENCFF094LXX.fastq.gz Illumina HiSeq 2000 /files/ENCFF247MLF/ released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF978VQG bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF522PUA, ENCFF807MUK 730004538 ENCODE Processing Pipeline 69980d1c52840fafde38f032c74a1a02 https://www.encodeproject.org/files/ENCFF978VQG/@@download/ENCFF978VQG.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF595XJJ bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF094LXX, ENCFF807MUK 1289441081 ENCODE Processing Pipeline 382fc1e1eb4ff8ce287a8b43b394bc8b https://www.encodeproject.org/files/ENCFF595XJJ/@@download/ENCFF595XJJ.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF149YPJ bigWig signal p-value ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF321UJV, ENCFF978VQG 646270929 ENCODE Processing Pipeline 424fb12090a4a79e0ec5db3adc9b5886 https://www.encodeproject.org/files/ENCFF149YPJ/@@download/ENCFF149YPJ.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF901EDD bigWig fold change over control ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF321UJV, ENCFF978VQG 479321384 ENCODE Processing Pipeline 5996a40396d4a80d7786cc1b983c296b https://www.encodeproject.org/files/ENCFF901EDD/@@download/ENCFF901EDD.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF771WMO bigWig signal p-value ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF595XJJ, ENCFF871NUZ 802605254 ENCODE Processing Pipeline eb9476141f615428b60cf9a5fad4f6fa https://www.encodeproject.org/files/ENCFF771WMO/@@download/ENCFF771WMO.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF118JDQ bigWig signal p-value ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF321UJV, ENCFF595XJJ, ENCFF871NUZ, ENCFF978VQG 1231429816 ENCODE Processing Pipeline 9af7a840bcd75ea32384ef5fd40d6587 https://www.encodeproject.org/files/ENCFF118JDQ/@@download/ENCFF118JDQ.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF677XKQ bigWig fold change over control ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF595XJJ, ENCFF871NUZ 669263224 ENCODE Processing Pipeline d33904a399b73d707a81699606b55341 https://www.encodeproject.org/files/ENCFF677XKQ/@@download/ENCFF677XKQ.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF189KUR bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF321UJV, ENCFF978VQG 5470428 ENCODE Processing Pipeline e9d497a192b45edf404a0686e4045169 https://www.encodeproject.org/files/ENCFF189KUR/@@download/ENCFF189KUR.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF770XDD bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF321UJV, ENCFF595XJJ, ENCFF871NUZ, ENCFF978VQG 6707063 ENCODE Processing Pipeline 9af239a45a55c248978d3296dd462ca4 https://www.encodeproject.org/files/ENCFF770XDD/@@download/ENCFF770XDD.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF432MFP bigBed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF770XDD 13442328 ENCODE Processing Pipeline 67c5808da1f33ff2754e579d1e0a1685 https://www.encodeproject.org/files/ENCFF432MFP/@@download/ENCFF432MFP.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF850ZSI bigWig fold change over control ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF321UJV, ENCFF595XJJ, ENCFF871NUZ, ENCFF978VQG 1197205552 ENCODE Processing Pipeline 1609496189a22b01ba6828dc4906ced2 https://www.encodeproject.org/files/ENCFF850ZSI/@@download/ENCFF850ZSI.bigWig hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF788BDL bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF595XJJ, ENCFF871NUZ 5644585 ENCODE Processing Pipeline 3336128abb2681da891b929d37244e79 https://www.encodeproject.org/files/ENCFF788BDL/@@download/ENCFF788BDL.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF760MDQ bigBed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF189KUR 13378830 ENCODE Processing Pipeline 3184a7e0aedb0ec2159783891372750e https://www.encodeproject.org/files/ENCFF760MDQ/@@download/ENCFF760MDQ.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF222HLE bigBed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF788BDL 13359700 ENCODE Processing Pipeline 363e537823783096dfc4f6ca4b7d0453 https://www.encodeproject.org/files/ENCFF222HLE/@@download/ENCFF222HLE.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF959QIW bam unfiltered alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF094LXX, ENCFF643CGH 1737111599 ENCODE Processing Pipeline 0ac028594788e753a25dc32b997fa4e8 https://www.encodeproject.org/files/ENCFF959QIW/@@download/ENCFF959QIW.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF302IKM bam unfiltered alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF522PUA, ENCFF643CGH 964414345 ENCODE Processing Pipeline 1aaf43aad0a7c7c9862fc3a8cf643d88 https://www.encodeproject.org/files/ENCFF302IKM/@@download/ENCFF302IKM.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF150DAE bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF522PUA, ENCFF643CGH 729995498 ENCODE Processing Pipeline 3299719394060a96041806b250aa9b4d https://www.encodeproject.org/files/ENCFF150DAE/@@download/ENCFF150DAE.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF360DAO bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF094LXX, ENCFF643CGH 1289553420 ENCODE Processing Pipeline 1e38e0f623ed5a38a888a96ae2eac312 https://www.encodeproject.org/files/ENCFF360DAO/@@download/ENCFF360DAO.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF209YZY bigWig signal p-value ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF150DAE, ENCFF259AXY, ENCFF360DAO, ENCFF610PNU 1138540672 ENCODE Processing Pipeline 04f10fa7f956c18ffd7e9bc38e09a60b https://www.encodeproject.org/files/ENCFF209YZY/@@download/ENCFF209YZY.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF393XUS bigWig signal p-value ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF150DAE, ENCFF610PNU 514764727 ENCODE Processing Pipeline 91aefd4defac95de1bcbf4cc3c15d746 https://www.encodeproject.org/files/ENCFF393XUS/@@download/ENCFF393XUS.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF993YRE bigWig signal p-value ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF259AXY, ENCFF360DAO 610916070 ENCODE Processing Pipeline cbd90948443be812fd8471a3917d01dc https://www.encodeproject.org/files/ENCFF993YRE/@@download/ENCFF993YRE.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF531YJX bigWig fold change over control ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF150DAE, ENCFF610PNU 482960251 ENCODE Processing Pipeline 92ee6993d53e5a3a352e0658f72304b7 https://www.encodeproject.org/files/ENCFF531YJX/@@download/ENCFF531YJX.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF402NQM bigWig fold change over control ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF259AXY, ENCFF360DAO 672844792 ENCODE Processing Pipeline faba42329d37e52c3f4af453670e19a9 https://www.encodeproject.org/files/ENCFF402NQM/@@download/ENCFF402NQM.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF608OBE bigWig fold change over control ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF150DAE, ENCFF259AXY, ENCFF360DAO, ENCFF610PNU 1208105098 ENCODE Processing Pipeline b5dfcf56dbca45a225a6cd0a55c961da https://www.encodeproject.org/files/ENCFF608OBE/@@download/ENCFF608OBE.bigWig GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF249KQN bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF150DAE, ENCFF610PNU 5275365 ENCODE Processing Pipeline 1adf07a63a8ecc85d23a7001fc136cd4 https://www.encodeproject.org/files/ENCFF249KQN/@@download/ENCFF249KQN.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF455JVE bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF259AXY, ENCFF360DAO 5467145 ENCODE Processing Pipeline 3a8bbad601a9666ac1acc285a5e4cd47 https://www.encodeproject.org/files/ENCFF455JVE/@@download/ENCFF455JVE.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF334TIY bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF150DAE, ENCFF259AXY, ENCFF360DAO, ENCFF610PNU 6537987 ENCODE Processing Pipeline 334f693f1474f86fbd1f040d18c9ddf8 https://www.encodeproject.org/files/ENCFF334TIY/@@download/ENCFF334TIY.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF865GWU bigBed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF249KQN 13363117 ENCODE Processing Pipeline 1f08de6c89175bf649ddf286ccdd23cd https://www.encodeproject.org/files/ENCFF865GWU/@@download/ENCFF865GWU.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF057IWC bigBed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF455JVE 11111567 ENCODE Processing Pipeline 4a1386ccb4f7f355276214483fad17c9 https://www.encodeproject.org/files/ENCFF057IWC/@@download/ENCFF057IWC.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF919URJ bed narrowPeak conservative idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF249KQN, ENCFF334TIY, ENCFF419RSJ, ENCFF455JVE 409049 ENCODE Processing Pipeline 091fe38e850ce41f95afd97effa4a94f https://www.encodeproject.org/files/ENCFF919URJ/@@download/ENCFF919URJ.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF146QSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF146URA 965551 ENCODE Processing Pipeline 12619a7434b12345b69e2d3e746477d1 https://www.encodeproject.org/files/ENCFF146QSZ/@@download/ENCFF146QSZ.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF099JHK bigBed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF334TIY 13456102 ENCODE Processing Pipeline b14c6ee435f54aa981da01135378e69c https://www.encodeproject.org/files/ENCFF099JHK/@@download/ENCFF099JHK.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF146URA bed narrowPeak optimal idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF249KQN, ENCFF334TIY, ENCFF419RSJ, ENCFF455JVE 471024 ENCODE Processing Pipeline 445528050ea8bb170d21d5db7d801ee6 https://www.encodeproject.org/files/ENCFF146URA/@@download/ENCFF146URA.bed.gz GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF631SDS bigBed narrowPeak conservative idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF919URJ 864408 ENCODE Processing Pipeline 5b8023d3106fdbc22b3fdd2e87bda476 https://www.encodeproject.org/files/ENCFF631SDS/@@download/ENCFF631SDS.bigBed GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF337QJW bed narrowPeak conservative idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF189KUR, ENCFF770XDD, ENCFF788BDL 366040 ENCODE Processing Pipeline 443a559be956fe102fa2d66c50e50c49 https://www.encodeproject.org/files/ENCFF337QJW/@@download/ENCFF337QJW.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF111DET bigBed narrowPeak optimal idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF975PTM 707039 ENCODE Processing Pipeline a7e9d0e5f3fe2687ddd50c7c7cf6d9ca https://www.encodeproject.org/files/ENCFF111DET/@@download/ENCFF111DET.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF439LBF bigBed narrowPeak conservative idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF337QJW 639368 ENCODE Processing Pipeline ed201b4cd092443fea966d06c0db81e9 https://www.encodeproject.org/files/ENCFF439LBF/@@download/ENCFF439LBF.bigBed hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF975PTM bed narrowPeak optimal idr thresholded peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1, 2 ENCFF001TDO, ENCFF189KUR, ENCFF770XDD, ENCFF788BDL 419388 ENCODE Processing Pipeline a00b36b1c73079054c5df7c5d21b322e https://www.encodeproject.org/files/ENCFF975PTM/@@download/ENCFF975PTM.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF000WAF bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WAZ 316133403 Michael Snyder, Stanford ac7d8d056bb5589f85fe24427681b944 https://www.encodeproject.org/files/ENCFF000WAF/@@download/ENCFF000WAF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WAG bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VEW 1174908 Michael Snyder, Stanford 53ed74a4b7f72a04c826a6ffdef89353 https://www.encodeproject.org/files/ENCFF000WAG/@@download/ENCFF000WAG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WAH bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WBG 620191363 Michael Snyder, Stanford e2491e58db8965b02c234aeea14a8d22 https://www.encodeproject.org/files/ENCFF000WAH/@@download/ENCFF000WAH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WAI bigWig signal ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 360925414 Michael Snyder, Stanford 765b459aa819e711a12828aae5a40886 https://www.encodeproject.org/files/ENCFF000WAI/@@download/ENCFF000WAI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WAZ fastq reads ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 619848124 Michael Snyder, Stanford 2ac797daa40d827577085b0976b1e1ed https://www.encodeproject.org/files/ENCFF000WAZ/@@download/ENCFF000WAZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WBG fastq reads ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1477862389 Michael Snyder, Stanford 4a0b2956ab97dafef7538d2e546e8d19 https://www.encodeproject.org/files/ENCFF000WBG/@@download/ENCFF000WBG.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VEW bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 491672 Michael Snyder, Stanford c8249d08767057570f21318f8223290e https://www.encodeproject.org/files/ENCFF001VEW/@@download/ENCFF001VEW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPD bed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 141778 ENCODE Consortium Analysis Working Group a1d333c58e9391193651f7f27ef10f3f https://www.encodeproject.org/files/ENCFF002CPD/@@download/ENCFF002CPD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF119CMD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPD 360389 ENCODE Consortium 8ab28973b105c3dfa45e21d8e5a70d6f https://www.encodeproject.org/files/ENCFF119CMD/@@download/ENCFF119CMD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF072DOQ bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF643CGH 1581037195 ENCODE Processing Pipeline 30beb9cd8e2140ccca39d3135c5a511b https://www.encodeproject.org/files/ENCFF072DOQ/@@download/ENCFF072DOQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF910PTH bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF643CGH 358293764 ENCODE Processing Pipeline 477cd0b185bce4a19bea97b1c91c3126 https://www.encodeproject.org/files/ENCFF910PTH/@@download/ENCFF910PTH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF752ACP bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF643CGH 658229107 ENCODE Processing Pipeline e312fc73453814f45654ccd5e03c7908 https://www.encodeproject.org/files/ENCFF752ACP/@@download/ENCFF752ACP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF486EWS bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF643CGH 906754509 ENCODE Processing Pipeline 1a12d6499690b9ab5e9421d6125a80c8 https://www.encodeproject.org/files/ENCFF486EWS/@@download/ENCFF486EWS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF450FPZ bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF807MUK 655945858 ENCODE Processing Pipeline 9f5c6f02f2143e490341f5229663935c https://www.encodeproject.org/files/ENCFF450FPZ/@@download/ENCFF450FPZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF229PFV bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF807MUK 355414673 ENCODE Processing Pipeline d7eaca0a90dbe725755c1cfba651662c https://www.encodeproject.org/files/ENCFF229PFV/@@download/ENCFF229PFV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF819KIB bam unfiltered alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF807MUK 1573791313 ENCODE Processing Pipeline f76e475eccbdb12373e8d6c2a721d46a https://www.encodeproject.org/files/ENCFF819KIB/@@download/ENCFF819KIB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716DZQ bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF807MUK 906580500 ENCODE Processing Pipeline fa0084a8bf986fb1df9dc92f53494f8a https://www.encodeproject.org/files/ENCFF716DZQ/@@download/ENCFF716DZQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF734MZW bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 182985926 ENCODE Processing Pipeline f9ab483793c3fd3a43e06a5dd1f57f11 https://www.encodeproject.org/files/ENCFF734MZW/@@download/ENCFF734MZW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF271KJR bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF910PTH 183082665 ENCODE Processing Pipeline c56d48f0077e5c4b5886f3ac87f15e8b https://www.encodeproject.org/files/ENCFF271KJR/@@download/ENCFF271KJR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF280ZOQ bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 155173339 ENCODE Processing Pipeline a544f2e8a41192184ba46c37ed8bbb65 https://www.encodeproject.org/files/ENCFF280ZOQ/@@download/ENCFF280ZOQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF415AUS bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 71452581 ENCODE Processing Pipeline c4aa1823371609e1981043788ae8e36b https://www.encodeproject.org/files/ENCFF415AUS/@@download/ENCFF415AUS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932ZKX bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF910PTH 156494668 ENCODE Processing Pipeline 1810c26bd51c4e7cd1d8ff36673755ef https://www.encodeproject.org/files/ENCFF932ZKX/@@download/ENCFF932ZKX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF323SMV bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO, ENCFF716DZQ 457480059 ENCODE Processing Pipeline 3b8ef6bd8fcfce33179fd3cf8f275539 https://www.encodeproject.org/files/ENCFF323SMV/@@download/ENCFF323SMV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF931XAL bed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF502JYT, ENCFF562LQW, ENCFF789TQP 90284 ENCODE Processing Pipeline 49b2701b7ddb6de70c1f665a1d884702 https://www.encodeproject.org/files/ENCFF931XAL/@@download/ENCFF931XAL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF944FSS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF931XAL 200403 ENCODE Processing Pipeline 11bd51ebb2c4b863bd754f1fdc1f88e3 https://www.encodeproject.org/files/ENCFF944FSS/@@download/ENCFF944FSS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF199BHM bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF502JYT 9777384 ENCODE Processing Pipeline 7f8274535aebed086023f9ca2c93dfdc https://www.encodeproject.org/files/ENCFF199BHM/@@download/ENCFF199BHM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF240QXY bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF787JPP 1911413 ENCODE Processing Pipeline 2d8963ea1defc4b659828680dea3fcbb https://www.encodeproject.org/files/ENCFF240QXY/@@download/ENCFF240QXY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF656ATE bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF930PRH 9773800 ENCODE Processing Pipeline 3a230bb154f1dcc2773dd855833f239c https://www.encodeproject.org/files/ENCFF656ATE/@@download/ENCFF656ATE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF893ENN bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO, ENCFF716DZQ 159020268 ENCODE Processing Pipeline d58a3004472bc666009ea7949da1cbf3 https://www.encodeproject.org/files/ENCFF893ENN/@@download/ENCFF893ENN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF789TQP bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 903479 ENCODE Processing Pipeline ac6d0a60a78a1be58526956c957270ac https://www.encodeproject.org/files/ENCFF789TQP/@@download/ENCFF789TQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611AMZ bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF486EWS 72671028 ENCODE Processing Pipeline c3af007852a8580f34e9356aeaa7d9b7 https://www.encodeproject.org/files/ENCFF611AMZ/@@download/ENCFF611AMZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039VCK bigWig signal p-value ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF486EWS, ENCFF710SMS, ENCFF910PTH 160063651 ENCODE Processing Pipeline 95e651d984c2bbb0b74774579d048a19 https://www.encodeproject.org/files/ENCFF039VCK/@@download/ENCFF039VCK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF293CPQ bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF486EWS, ENCFF710SMS, ENCFF910PTH 463206464 ENCODE Processing Pipeline ffc534590a94fc69cc5f926786559014 https://www.encodeproject.org/files/ENCFF293CPQ/@@download/ENCFF293CPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF645GWJ bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF486EWS 295625448 ENCODE Processing Pipeline f4c1b322bf27805a73d0ca4646c124f4 https://www.encodeproject.org/files/ENCFF645GWJ/@@download/ENCFF645GWJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF221NFI bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058MCE 10785594 ENCODE Processing Pipeline c679ba6ab56d72209cc0fb370d4f3b0b https://www.encodeproject.org/files/ENCFF221NFI/@@download/ENCFF221NFI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF652BRY bed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058MCE, ENCFF419RSJ, ENCFF787JPP, ENCFF930PRH 89258 ENCODE Processing Pipeline 074167810e21167ebe5514044b7a9555 https://www.encodeproject.org/files/ENCFF652BRY/@@download/ENCFF652BRY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500DRR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF652BRY 199152 ENCODE Processing Pipeline a2b4253fc491a7497f734cd2c37e449e https://www.encodeproject.org/files/ENCFF500DRR/@@download/ENCFF500DRR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF448TMI bigWig fold change over control ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 304178484 ENCODE Processing Pipeline b1ab86d54b6e658ab885dc38338a931d https://www.encodeproject.org/files/ENCFF448TMI/@@download/ENCFF448TMI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF502JYT bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 3645251 ENCODE Processing Pipeline 9595fd26369e5f64ce4bce97ca41d979 https://www.encodeproject.org/files/ENCFF502JYT/@@download/ENCFF502JYT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF562LQW bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO, ENCFF716DZQ 4231032 ENCODE Processing Pipeline ca13261b33aba93fa7c70526709557d2 https://www.encodeproject.org/files/ENCFF562LQW/@@download/ENCFF562LQW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF123POF bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF789TQP 2038170 ENCODE Processing Pipeline 712c483cc807436767d766df91209b59 https://www.encodeproject.org/files/ENCFF123POF/@@download/ENCFF123POF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF787JPP bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF710SMS, ENCFF910PTH 851535 ENCODE Processing Pipeline 9f5c13ffdf3ff1b5d567cec9758613e4 https://www.encodeproject.org/files/ENCFF787JPP/@@download/ENCFF787JPP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF622WFK bigBed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF562LQW 10789713 ENCODE Processing Pipeline ed05bc49f6c94682b2509e8ab5bd99de https://www.encodeproject.org/files/ENCFF622WFK/@@download/ENCFF622WFK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF930PRH bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF477ZKJ, ENCFF486EWS 3640787 ENCODE Processing Pipeline 0f1dc673966fb8352a7b708eb1c21783 https://www.encodeproject.org/files/ENCFF930PRH/@@download/ENCFF930PRH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF058MCE bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477ZKJ, ENCFF486EWS, ENCFF710SMS, ENCFF910PTH 4230995 ENCODE Processing Pipeline dfb7e117dd615fb21161ad0bf8ededde https://www.encodeproject.org/files/ENCFF058MCE/@@download/ENCFF058MCE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000BZX bigBed broadPeak peaks ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SZT 348687 Bradley Bernstein, Broad 465db0b9cbd1052eb580b9011ed1d7f1 https://www.encodeproject.org/files/ENCFF000BZX/@@download/ENCFF000BZX.bigBed hg19 released low read length, inconsistent platforms missing raw data in replicate ENCFF000BZY bam alignments ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CAI 1128848624 Bradley Bernstein, Broad d09f9c4cf124705b1cd48ae69168bc1e https://www.encodeproject.org/files/ENCFF000BZY/@@download/ENCFF000BZY.bam hg19 released low read length, inconsistent platforms missing raw data in replicate ENCFF000BZZ bigWig signal ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA see document see document False 2012-08-06 ENCODE 182898401 Bradley Bernstein, Broad 0bf1315d4b001d5b6a5938204a1d38c9 https://www.encodeproject.org/files/ENCFF000BZZ/@@download/ENCFF000BZZ.bigWig hg19 released low read length, inconsistent platforms missing derived_from, missing raw data in replicate ENCFF000CAI fastq reads ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1240465203 Bradley Bernstein, Broad 6edf7c991c24b05d86914541e680b96e https://www.encodeproject.org/files/ENCFF000CAI/@@download/ENCFF000CAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BWK/ released low read length, inconsistent platforms missing raw data in replicate ENCFF001SZT bed broadPeak peaks ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA see document see document False 2012-08-06 ENCODE 178678 Bradley Bernstein, Broad 65da1e9239562b7723b8a6c02897bbba https://www.encodeproject.org/files/ENCFF001SZT/@@download/ENCFF001SZT.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, missing raw data in replicate ENCFF000XCB bam alignments ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XCW 1194084024 Michael Snyder, Stanford fade2a2fce5929178541d9063d4bb41d https://www.encodeproject.org/files/ENCFF000XCB/@@download/ENCFF000XCB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XCC bigBed narrowPeak peaks ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIC 563853 Michael Snyder, Stanford 0381dbb500bbfb74dd10b9b5e991dfe0 https://www.encodeproject.org/files/ENCFF000XCC/@@download/ENCFF000XCC.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XCD bigWig signal ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 438981243 Michael Snyder, Stanford 0f9aae6abd5be6fd852ad1d203f7793e https://www.encodeproject.org/files/ENCFF000XCD/@@download/ENCFF000XCD.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XCE bam alignments ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XCU 949129117 Michael Snyder, Stanford afb9130dffc9959110989da5fe0e4e47 https://www.encodeproject.org/files/ENCFF000XCE/@@download/ENCFF000XCE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XCU fastq reads ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 713328475 Michael Snyder, Stanford fc72aa3eecf2731fb89190a65b63f776 https://www.encodeproject.org/files/ENCFF000XCU/@@download/ENCFF000XCU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released biological replicates with identical biosample insufficient read length ENCFF000XCW fastq reads ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 887888543 Michael Snyder, Stanford 4a677a6e4dfe95591aea8ba15e0a072c https://www.encodeproject.org/files/ENCFF000XCW/@@download/ENCFF000XCW.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released biological replicates with identical biosample insufficient read length ENCFF001VIC bed narrowPeak peaks ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 225982 Michael Snyder, Stanford 546b3bc10a764fba7ae988063032934d https://www.encodeproject.org/files/ENCFF001VIC/@@download/ENCFF001VIC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CSD bed narrowPeak optimal idr thresholded peaks ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 540407 ENCODE Consortium Analysis Working Group 48b2d8533a6c3c059d9939f1cc1964cc https://www.encodeproject.org/files/ENCFF002CSD/@@download/ENCFF002CSD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF429OBZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSD 1194970 ENCODE Consortium 27b2c5e9f77f4993c4e913da13366c77 https://www.encodeproject.org/files/ENCFF429OBZ/@@download/ENCFF429OBZ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNU bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WOF 252525576 Michael Snyder, Stanford a8608c58ccf72be1403a5029118eeeb5 https://www.encodeproject.org/files/ENCFF000WNU/@@download/ENCFF000WNU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNV bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WOC 259606302 Michael Snyder, Stanford 92e0a8655b4f2cf3d4fb037880e6a3f9 https://www.encodeproject.org/files/ENCFF000WNV/@@download/ENCFF000WNV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNW bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WOL 363311792 Michael Snyder, Stanford aec3ac44766f1f5b4de769b191c1ccc1 https://www.encodeproject.org/files/ENCFF000WNW/@@download/ENCFF000WNW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNX bigBed narrowPeak peaks ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGI 755861 Michael Snyder, Stanford 1c4b50f2e3a1999421c72e6089543508 https://www.encodeproject.org/files/ENCFF000WNX/@@download/ENCFF000WNX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNY bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WOB 166671263 Michael Snyder, Stanford aaebddf02afa39502a28a4054d4922a8 https://www.encodeproject.org/files/ENCFF000WNY/@@download/ENCFF000WNY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WOB fastq reads ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 1 28 single-ended 135062537 Michael Snyder, Stanford 2d9351939112ec089bc9bb3625158032 https://www.encodeproject.org/files/ENCFF000WOB/@@download/ENCFF000WOB.fastq.gz Illumina Genome Analyzer /files/ENCFF000WNP/ released biological replicates with identical biosample insufficient read length ENCFF000WOC fastq reads ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 214835909 Michael Snyder, Stanford 961f4230b8f0fc1b47755e71ff38c2d4 https://www.encodeproject.org/files/ENCFF000WOC/@@download/ENCFF000WOC.fastq.gz Illumina Genome Analyzer /files/ENCFF000WNP/ released biological replicates with identical biosample insufficient read length ENCFF000WOE bigWig signal ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 276728840 Michael Snyder, Stanford 81ce68b59ec9a1474f9687f9459f6dbe https://www.encodeproject.org/files/ENCFF000WOE/@@download/ENCFF000WOE.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WOF fastq reads ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 221946897 Michael Snyder, Stanford 75eea6882be70c64a087ee3eb92b7a07 https://www.encodeproject.org/files/ENCFF000WOF/@@download/ENCFF000WOF.fastq.gz Illumina Genome Analyzer /files/ENCFF000WNP/ released biological replicates with identical biosample insufficient read length ENCFF000WOL fastq reads ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 300810450 Michael Snyder, Stanford 4ab0b66a4cea331800495a64c7f73f70 https://www.encodeproject.org/files/ENCFF000WOL/@@download/ENCFF000WOL.fastq.gz Illumina Genome Analyzer /files/ENCFF000WNP/ released biological replicates with identical biosample insufficient read length ENCFF001VGI bed narrowPeak peaks ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 319192 Michael Snyder, Stanford 1cbbc33cf4b67b629bad45a55c31cd55 https://www.encodeproject.org/files/ENCFF001VGI/@@download/ENCFF001VGI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CQK bed narrowPeak optimal idr thresholded peaks ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 443569 ENCODE Consortium Analysis Working Group 6a5965fab5cdaddbefb2439220bac293 https://www.encodeproject.org/files/ENCFF002CQK/@@download/ENCFF002CQK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF774ROA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQK 1292232 ENCODE Consortium d454edba968a3fdff19e96cee1b93241 https://www.encodeproject.org/files/ENCFF774ROA/@@download/ENCFF774ROA.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XOF bam alignments ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XOM 349919297 Kevin Struhl, HMS 6a7dae081677f602cebb4ac8fb13bc07 https://www.encodeproject.org/files/ENCFF000XOF/@@download/ENCFF000XOF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XOG bigBed narrowPeak peaks ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJT 158391 Kevin Struhl, HMS 003da4cde414b0b01107b65c2cd92664 https://www.encodeproject.org/files/ENCFF000XOG/@@download/ENCFF000XOG.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XOH bam alignments ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XON 340658014 Kevin Struhl, HMS 28f68427e5377e8ece0f066c5e46f1a9 https://www.encodeproject.org/files/ENCFF000XOH/@@download/ENCFF000XOH.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XOJ bigWig signal ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 233288237 Kevin Struhl, HMS 637da601c6c7f7e18cd1ed3eab6eaeae https://www.encodeproject.org/files/ENCFF000XOJ/@@download/ENCFF000XOJ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000XOM fastq reads ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1084825492 Kevin Struhl, HMS cf0c891b1e2c7a610e83039de45cfaa9 https://www.encodeproject.org/files/ENCFF000XOM/@@download/ENCFF000XOM.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XON fastq reads ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1068794498 Kevin Struhl, HMS 9dea8b0c87b9b8d6d6844a9d5111cbe7 https://www.encodeproject.org/files/ENCFF000XON/@@download/ENCFF000XON.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF001VJT bed narrowPeak peaks ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 31100 Kevin Struhl, HMS 4d84085297f12724dd170b233feb07d6 https://www.encodeproject.org/files/ENCFF001VJT/@@download/ENCFF001VJT.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CTR bed narrowPeak optimal idr thresholded peaks ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 7257 ENCODE Consortium Analysis Working Group 7695f41be364380f1e726d98727cc044 https://www.encodeproject.org/files/ENCFF002CTR/@@download/ENCFF002CTR.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF038KMV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTR 97589 ENCODE Consortium 96bc30ddbde428259e3b6ce610822fbc https://www.encodeproject.org/files/ENCFF038KMV/@@download/ENCFF038KMV.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000PTJ bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PTU 1155363310 Richard Myers, HAIB 9acbc1085506a9d2d3ffd168a308b0c0 https://www.encodeproject.org/files/ENCFF000PTJ/@@download/ENCFF000PTJ.bam hg19 archived low read depth biological replicates with identical biosample ENCFF000PTK bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PTV 1302768247 Richard Myers, HAIB 86a1e58f4ec3bacf5359d5908a9ccbc6 https://www.encodeproject.org/files/ENCFF000PTK/@@download/ENCFF000PTK.bam hg19 archived low read depth biological replicates with identical biosample ENCFF000PTL bigBed broadPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UIK 159329 Richard Myers, HAIB 741fe0c3e8cc503a022a5914d75b7c4c https://www.encodeproject.org/files/ENCFF000PTL/@@download/ENCFF000PTL.bigBed hg19 archived low read depth biological replicates with identical biosample ENCFF000PTM bigBed broadPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UIL 154608 Richard Myers, HAIB 8f4a5941019f7a654e86bedb4e85fa79 https://www.encodeproject.org/files/ENCFF000PTM/@@download/ENCFF000PTM.bigBed hg19 archived low read depth biological replicates with identical biosample ENCFF000PTN bigWig raw signal ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 140253235 Richard Myers, HAIB 798f7d1b9cc5cc23668c8c362551a7ad https://www.encodeproject.org/files/ENCFF000PTN/@@download/ENCFF000PTN.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF000PTP bigWig raw signal ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 123563857 Richard Myers, HAIB 32085c37f435cccabe5530e41183cc30 https://www.encodeproject.org/files/ENCFF000PTP/@@download/ENCFF000PTP.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF000PTU fastq reads ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1174433643 Richard Myers, HAIB 47711bc89f922d59bbcd752beee2d22a https://www.encodeproject.org/files/ENCFF000PTU/@@download/ENCFF000PTU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released low read depth biological replicates with identical biosample ENCFF000PTV fastq reads ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1349046004 Richard Myers, HAIB 12d570aa1b27e2c50660fb0f7db48c1c https://www.encodeproject.org/files/ENCFF000PTV/@@download/ENCFF000PTV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released low read depth biological replicates with identical biosample ENCFF001UIK bed broadPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 73219 Richard Myers, HAIB ce7423dce75a47671a189408237e2ce2 https://www.encodeproject.org/files/ENCFF001UIK/@@download/ENCFF001UIK.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from ENCFF001UIL bed broadPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 67762 Richard Myers, HAIB 83aee31f0885a44a253f2bdf51a7ba39 https://www.encodeproject.org/files/ENCFF001UIL/@@download/ENCFF001UIL.bed.gz hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF728ACG bam unfiltered alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTU, ENCFF643CGH 1245801432 ENCODE Processing Pipeline e40fe336a187d89e0ac83b95943e50d8 https://www.encodeproject.org/files/ENCFF728ACG/@@download/ENCFF728ACG.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF540XOR bam unfiltered alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTV, ENCFF643CGH 1392519668 ENCODE Processing Pipeline 6eb2aab8729f1c5d1b96aefb67c7c8e1 https://www.encodeproject.org/files/ENCFF540XOR/@@download/ENCFF540XOR.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF282IXA bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTV, ENCFF643CGH 981081485 ENCODE Processing Pipeline c7b97e187b2740824f8b0147b39f7501 https://www.encodeproject.org/files/ENCFF282IXA/@@download/ENCFF282IXA.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF662PDI bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTU, ENCFF643CGH 901539713 ENCODE Processing Pipeline b2fe55ad1ac050ab6138a627be0cb52e https://www.encodeproject.org/files/ENCFF662PDI/@@download/ENCFF662PDI.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF260BJG bam unfiltered alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTU, ENCFF807MUK 1241575786 ENCODE Processing Pipeline 9f0481bacd0618fc7c0e73dadcd71707 https://www.encodeproject.org/files/ENCFF260BJG/@@download/ENCFF260BJG.bam hg19 released low read depth biological replicates with identical biosample ENCFF497ISN bam unfiltered alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTV, ENCFF807MUK 1388453192 ENCODE Processing Pipeline d78f8a2ed462a528c4a067f962a560de https://www.encodeproject.org/files/ENCFF497ISN/@@download/ENCFF497ISN.bam hg19 released low read depth biological replicates with identical biosample ENCFF704SGZ bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTU, ENCFF807MUK 901805194 ENCODE Processing Pipeline 9c6bdcd0309f54cce268d34e5c0b8d90 https://www.encodeproject.org/files/ENCFF704SGZ/@@download/ENCFF704SGZ.bam hg19 released low read depth biological replicates with identical biosample ENCFF839FNS bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTV, ENCFF807MUK 981279339 ENCODE Processing Pipeline 673b366e8d8806594b205150b12b4bb8 https://www.encodeproject.org/files/ENCFF839FNS/@@download/ENCFF839FNS.bam hg19 released low read depth biological replicates with identical biosample ENCFF647DHT bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF839FNS, ENCFF880DIZ 5076666 ENCODE Processing Pipeline 1bc765088eadfbe7b154cd6d59757a55 https://www.encodeproject.org/files/ENCFF647DHT/@@download/ENCFF647DHT.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF902HEC bigWig fold change over control ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF839FNS, ENCFF880DIZ 397738554 ENCODE Processing Pipeline a2495ea7b8c011919709a948fc7f6de3 https://www.encodeproject.org/files/ENCFF902HEC/@@download/ENCFF902HEC.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF394XUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF280GDT 375937 ENCODE Processing Pipeline 5cc138acec57cf6bc2226500e7d53881 https://www.encodeproject.org/files/ENCFF394XUX/@@download/ENCFF394XUX.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF904KNO bigWig signal p-value ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF839FNS, ENCFF880DIZ 428734805 ENCODE Processing Pipeline 755307ffefe9430c872e8e29732ee6bc https://www.encodeproject.org/files/ENCFF904KNO/@@download/ENCFF904KNO.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF518PRL bigWig fold change over control ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF704SGZ, ENCFF880DIZ 352574215 ENCODE Processing Pipeline aa278f1c34dfc1b2be029daf48ca2ce2 https://www.encodeproject.org/files/ENCFF518PRL/@@download/ENCFF518PRL.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF922SVY bigBed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF647DHT 11036527 ENCODE Processing Pipeline a8f47943687ae874980d8c9d8cda8f96 https://www.encodeproject.org/files/ENCFF922SVY/@@download/ENCFF922SVY.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF052MMZ bigBed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF847KJV 10405376 ENCODE Processing Pipeline 34d23d5aa2e620cee83597ecd41b1ee9 https://www.encodeproject.org/files/ENCFF052MMZ/@@download/ENCFF052MMZ.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF401OBH bigWig fold change over control ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF704SGZ, ENCFF839FNS, ENCFF880DIZ 634012003 ENCODE Processing Pipeline 6b7af25d46f741288b11a4465f4dac67 https://www.encodeproject.org/files/ENCFF401OBH/@@download/ENCFF401OBH.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF832CHV bigBed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF148CAJ 11115125 ENCODE Processing Pipeline 55ed1ba4211e2e88c7ba7fb2a1c0c1cc https://www.encodeproject.org/files/ENCFF832CHV/@@download/ENCFF832CHV.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF280GDT bed narrowPeak optimal idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF148CAJ, ENCFF647DHT, ENCFF847KJV 165440 ENCODE Processing Pipeline 703045c5651246291956c1efe81a8e2e https://www.encodeproject.org/files/ENCFF280GDT/@@download/ENCFF280GDT.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF965YGO bigWig signal p-value ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF704SGZ, ENCFF880DIZ 385664869 ENCODE Processing Pipeline d193e452618b95bb678b8226028ba9f4 https://www.encodeproject.org/files/ENCFF965YGO/@@download/ENCFF965YGO.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF622GLV bigWig signal p-value ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF704SGZ, ENCFF839FNS, ENCFF880DIZ 519127830 ENCODE Processing Pipeline e95cd26ed0356ad5855ccf2ed3d80fc1 https://www.encodeproject.org/files/ENCFF622GLV/@@download/ENCFF622GLV.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF847KJV bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF704SGZ, ENCFF880DIZ 4166481 ENCODE Processing Pipeline 37c9960d1e9a499802d5acda354727c2 https://www.encodeproject.org/files/ENCFF847KJV/@@download/ENCFF847KJV.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF148CAJ bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF704SGZ, ENCFF839FNS, ENCFF880DIZ 5124547 ENCODE Processing Pipeline 47be4310e7441962a0909fc330917f6e https://www.encodeproject.org/files/ENCFF148CAJ/@@download/ENCFF148CAJ.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF364ZKO bed narrowPeak conservative idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF148CAJ, ENCFF647DHT, ENCFF847KJV 154516 ENCODE Processing Pipeline c10a7ce6ea2c9d0f160cbcf866bdd6dd https://www.encodeproject.org/files/ENCFF364ZKO/@@download/ENCFF364ZKO.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF447LVA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF364ZKO 358159 ENCODE Processing Pipeline 4d9235f072ef8b20903ee627eb5ff0ac https://www.encodeproject.org/files/ENCFF447LVA/@@download/ENCFF447LVA.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF265KEX bigWig signal p-value ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF282IXA, ENCFF895MWF 508164666 ENCODE Processing Pipeline a443c3e55af349ef67b352024df5e0bc https://www.encodeproject.org/files/ENCFF265KEX/@@download/ENCFF265KEX.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF662EOA bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF282IXA, ENCFF895MWF 5070683 ENCODE Processing Pipeline 13aa4c9d38592fc2b4c07758e21dc8e5 https://www.encodeproject.org/files/ENCFF662EOA/@@download/ENCFF662EOA.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF591TKX bigBed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF647MCB 11122574 ENCODE Processing Pipeline 70c91a902659b48d9651d2f08ba7136b https://www.encodeproject.org/files/ENCFF591TKX/@@download/ENCFF591TKX.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF387FKQ bed narrowPeak conservative idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF449WCD, ENCFF647MCB, ENCFF662EOA 154683 ENCODE Processing Pipeline c0102babc32760e9683a0495ad7e7b80 https://www.encodeproject.org/files/ENCFF387FKQ/@@download/ENCFF387FKQ.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF921QBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF564YAP 382239 ENCODE Processing Pipeline f899585da6f0f7b85e40fe192099ad24 https://www.encodeproject.org/files/ENCFF921QBP/@@download/ENCFF921QBP.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF603CVY bigWig fold change over control ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF282IXA, ENCFF895MWF 396242217 ENCODE Processing Pipeline 996a2bde6b06f4d8ce050d54f408cc3b https://www.encodeproject.org/files/ENCFF603CVY/@@download/ENCFF603CVY.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF676HMT bigWig signal p-value ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF662PDI, ENCFF895MWF 418252124 ENCODE Processing Pipeline 45c821108ca9512a6548ade409294bfe https://www.encodeproject.org/files/ENCFF676HMT/@@download/ENCFF676HMT.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF969ATY bigWig fold change over control ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF662PDI, ENCFF895MWF 347894449 ENCODE Processing Pipeline 497ad9f07df7d659ca434cca86985848 https://www.encodeproject.org/files/ENCFF969ATY/@@download/ENCFF969ATY.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF426TJC bigBed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF449WCD 10420559 ENCODE Processing Pipeline 771045aba3c1b7e2c36f23bac684111c https://www.encodeproject.org/files/ENCFF426TJC/@@download/ENCFF426TJC.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF564YAP bed narrowPeak optimal idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF449WCD, ENCFF647MCB, ENCFF662EOA 169484 ENCODE Processing Pipeline 51694e4067f5c990ee7c6539b525976a https://www.encodeproject.org/files/ENCFF564YAP/@@download/ENCFF564YAP.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF721YIM bigWig signal p-value ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF282IXA, ENCFF662PDI, ENCFF895MWF 519157495 ENCODE Processing Pipeline 932c8d51f58b4ed6202799d9a6ef6a65 https://www.encodeproject.org/files/ENCFF721YIM/@@download/ENCFF721YIM.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF724AUK bigWig fold change over control ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF282IXA, ENCFF662PDI, ENCFF895MWF 619944056 ENCODE Processing Pipeline 8ec157f595dcb86010a89a60e1a28735 https://www.encodeproject.org/files/ENCFF724AUK/@@download/ENCFF724AUK.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF449WCD bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF662PDI, ENCFF895MWF 4165696 ENCODE Processing Pipeline 44455b281ddd5e2adae720b5a639e84e https://www.encodeproject.org/files/ENCFF449WCD/@@download/ENCFF449WCD.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF647MCB bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF282IXA, ENCFF662PDI, ENCFF895MWF 5116794 ENCODE Processing Pipeline d8d7dd5d8771c62be7457c91125e37cb https://www.encodeproject.org/files/ENCFF647MCB/@@download/ENCFF647MCB.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF389SFK bigBed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF662EOA 11043766 ENCODE Processing Pipeline 4e2b70c3ab76c64deb9f56a63beb0305 https://www.encodeproject.org/files/ENCFF389SFK/@@download/ENCFF389SFK.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF819NUT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF387FKQ 359526 ENCODE Processing Pipeline 0fe466574017d8326b68f664753a9ed8 https://www.encodeproject.org/files/ENCFF819NUT/@@download/ENCFF819NUT.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF000BVG bigBed broadPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SYX 858597 Bradley Bernstein, Broad e1606d1826a8bcf7d6c38d283e53d5f4 https://www.encodeproject.org/files/ENCFF000BVG/@@download/ENCFF000BVG.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000BVI bigWig signal ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 129265434 Bradley Bernstein, Broad 4ecc96d73af7e95214d4f612f64bb109 https://www.encodeproject.org/files/ENCFF000BVI/@@download/ENCFF000BVI.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths missing derived_from, mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000BVJ bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 3 1 971937031 Bradley Bernstein, Broad 424648d686aff363e79b958e2897a8db https://www.encodeproject.org/files/ENCFF000BVJ/@@download/ENCFF000BVJ.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths missing derived_from, mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF001SYX bed broadPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 448409 Bradley Bernstein, Broad 92bc493f6b791547c1f4f5dd32e0df84 https://www.encodeproject.org/files/ENCFF001SYX/@@download/ENCFF001SYX.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths missing derived_from, mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF388TMG fastq reads ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 1 76 paired-ended 2 ENCFF942JXG 1760928770 Bradley Bernstein, Broad 30c8f58c54390e03f5f5168e05f1a1e0 https://www.encodeproject.org/files/ENCFF388TMG/@@download/ENCFF388TMG.fastq.gz Illumina HiSeq 2000 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, missing controlled_by, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF702MJJ fastq reads ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1173062265 Bradley Bernstein, Broad 0655fdee97cb76833c89a4a22f8136ea https://www.encodeproject.org/files/ENCFF702MJJ/@@download/ENCFF702MJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BWK/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF942JXG fastq reads ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 1 76 paired-ended 1 ENCFF388TMG 1762729112 Bradley Bernstein, Broad d72f3a7a10cdcc56b1c4ffab2c104a74 https://www.encodeproject.org/files/ENCFF942JXG/@@download/ENCFF942JXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF283HQV/, /files/ENCFF994FIB/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, inconsistent control run_type, control low read depth, low read depth, inconsistent control read length, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF750XGM bam unfiltered alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF643CGH, ENCFF702MJJ 1383708461 ENCODE Processing Pipeline 148c4d7ed5b5076e03144fcf38d03257 https://www.encodeproject.org/files/ENCFF750XGM/@@download/ENCFF750XGM.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF781JEI bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF643CGH, ENCFF702MJJ 190916888 ENCODE Processing Pipeline 1bac186a0ea890210e8b2c9ef79b8450 https://www.encodeproject.org/files/ENCFF781JEI/@@download/ENCFF781JEI.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF210NXE bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF702MJJ, ENCFF807MUK 191122093 ENCODE Processing Pipeline 46a760492ff637337a0d0fcfe106baaf https://www.encodeproject.org/files/ENCFF210NXE/@@download/ENCFF210NXE.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF433RFL bam unfiltered alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF942JXG 1275596028 ENCODE Processing Pipeline ee332a0afb4067e3eddef6e4c450fcd9 https://www.encodeproject.org/files/ENCFF433RFL/@@download/ENCFF433RFL.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF765LCE bam unfiltered alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF702MJJ, ENCFF807MUK 1370838964 ENCODE Processing Pipeline 7051006d156447c3bf406d5d0aae52ec https://www.encodeproject.org/files/ENCFF765LCE/@@download/ENCFF765LCE.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF954PRL bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF942JXG 703858140 ENCODE Processing Pipeline 95d84e928bb4a56e97df9c8842b928ba https://www.encodeproject.org/files/ENCFF954PRL/@@download/ENCFF954PRL.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF405REH bam unfiltered alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF942JXG 1281943887 ENCODE Processing Pipeline f2096ee796fa5a89ea278d607be64df6 https://www.encodeproject.org/files/ENCFF405REH/@@download/ENCFF405REH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF965GBZ bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF942JXG 704396288 ENCODE Processing Pipeline 9554700a3210215fafd8162be54ba0de https://www.encodeproject.org/files/ENCFF965GBZ/@@download/ENCFF965GBZ.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF759VTK bigWig signal p-value ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF781JEI 246387665 ENCODE Processing Pipeline 161c03a01238be8c4bc7c3a1f8ac136d https://www.encodeproject.org/files/ENCFF759VTK/@@download/ENCFF759VTK.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF292HPB bigWig fold change over control ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF781JEI 97636384 ENCODE Processing Pipeline 5e9809b7c9d0f00812b7bb0842839483 https://www.encodeproject.org/files/ENCFF292HPB/@@download/ENCFF292HPB.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF436VLT bed narrowPeak conservative idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF259GGN, ENCFF878IXX, ENCFF899WHU 39259 ENCODE Processing Pipeline 4cac43825aa66c90ee229715ebdbb477 https://www.encodeproject.org/files/ENCFF436VLT/@@download/ENCFF436VLT.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF878IXX bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF210NXE, ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 6756256 ENCODE Processing Pipeline 182bfa3c5923a78514852b50e1040aee https://www.encodeproject.org/files/ENCFF878IXX/@@download/ENCFF878IXX.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF777DXI bigBed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF899WHU 8066714 ENCODE Processing Pipeline bba209250530cad225c05cfe33812c88 https://www.encodeproject.org/files/ENCFF777DXI/@@download/ENCFF777DXI.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF244SSS bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF781JEI 3137209 ENCODE Processing Pipeline ec1abde3487aeb144cb9f40e632ab538 https://www.encodeproject.org/files/ENCFF244SSS/@@download/ENCFF244SSS.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF675VNE bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF210GJE 265966 ENCODE Processing Pipeline 6fa07fff7c84981f1c630b0efd19e3ec https://www.encodeproject.org/files/ENCFF675VNE/@@download/ENCFF675VNE.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF873PUD bigWig signal p-value ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF210NXE, ENCFF574XYY 240972753 ENCODE Processing Pipeline 70cfa0667a6b0e8d46adc7f22d5c296b https://www.encodeproject.org/files/ENCFF873PUD/@@download/ENCFF873PUD.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF666QUX bigWig fold change over control ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF210NXE, ENCFF574XYY 98197119 ENCODE Processing Pipeline 102bd20b2c7e97c82274d51606fe2b9f https://www.encodeproject.org/files/ENCFF666QUX/@@download/ENCFF666QUX.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF099FAU bigWig fold change over control ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 414466620 ENCODE Processing Pipeline 752cf94966107ece4d58f718db3b0c31 https://www.encodeproject.org/files/ENCFF099FAU/@@download/ENCFF099FAU.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF206WVX bigWig fold change over control ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF210NXE, ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 486407725 ENCODE Processing Pipeline 47e1700994357c1ef3edc4428105a393 https://www.encodeproject.org/files/ENCFF206WVX/@@download/ENCFF206WVX.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF636NOK bigWig fold change over control ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF392XRJ, ENCFF829HZY, ENCFF954PRL 413146001 ENCODE Processing Pipeline 59bf55776c77b58aa8a62826b5cf4a81 https://www.encodeproject.org/files/ENCFF636NOK/@@download/ENCFF636NOK.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF110FTQ bigBed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF244SSS 8033010 ENCODE Processing Pipeline 2bd5213edc179da1a93b14e270b5da05 https://www.encodeproject.org/files/ENCFF110FTQ/@@download/ENCFF110FTQ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF938QZS bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF346SWX 171101 ENCODE Processing Pipeline e5dee66d0b5bc36aee958f02a5164569 https://www.encodeproject.org/files/ENCFF938QZS/@@download/ENCFF938QZS.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF210GJE bed narrowPeak optimal idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064CHN, ENCFF244SSS, ENCFF391THL, ENCFF419RSJ 84014 ENCODE Processing Pipeline deffa54571fba63b8dcf1a3a04b6298a https://www.encodeproject.org/files/ENCFF210GJE/@@download/ENCFF210GJE.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF787JMC bigWig signal p-value ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 426661197 ENCODE Processing Pipeline ccf3459aac085a9f6cd1a19ad5384d1f https://www.encodeproject.org/files/ENCFF787JMC/@@download/ENCFF787JMC.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF767YSR bigWig signal p-value ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF781JEI, ENCFF829HZY, ENCFF954PRL 510916346 ENCODE Processing Pipeline 97af4c9fe26826a00ebe4b29cbdb5294 https://www.encodeproject.org/files/ENCFF767YSR/@@download/ENCFF767YSR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF899WHU bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF210NXE, ENCFF574XYY 3175361 ENCODE Processing Pipeline de97e63da95381464b0585cfcc301a51 https://www.encodeproject.org/files/ENCFF899WHU/@@download/ENCFF899WHU.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF780LQI bigWig signal p-value ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF210NXE, ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 563847431 ENCODE Processing Pipeline 639359a88e6dca853bf00b1f0c62e9f1 https://www.encodeproject.org/files/ENCFF780LQI/@@download/ENCFF780LQI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF259GGN bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 5985541 ENCODE Processing Pipeline 7c06ada8c4afcca9a87c7d40ad8e052e https://www.encodeproject.org/files/ENCFF259GGN/@@download/ENCFF259GGN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF133HYP bigBed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF259GGN 12899645 ENCODE Processing Pipeline 45f3321da967d548836c26815985d802 https://www.encodeproject.org/files/ENCFF133HYP/@@download/ENCFF133HYP.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF069LKS bigBed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF878IXX 12477332 ENCODE Processing Pipeline c5205e9bb6b8a8f78cb4f9dfce147403 https://www.encodeproject.org/files/ENCFF069LKS/@@download/ENCFF069LKS.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF064CHN bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF392XRJ, ENCFF829HZY, ENCFF954PRL 5969961 ENCODE Processing Pipeline 213c1e8d6651e22f120d6ed955c885ef https://www.encodeproject.org/files/ENCFF064CHN/@@download/ENCFF064CHN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF391THL bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF781JEI, ENCFF829HZY, ENCFF954PRL 6746202 ENCODE Processing Pipeline bd8f3b183fae9c685e64bb4e29dffda8 https://www.encodeproject.org/files/ENCFF391THL/@@download/ENCFF391THL.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF346SWX bed narrowPeak conservative idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064CHN, ENCFF244SSS, ENCFF391THL, ENCFF419RSJ 39126 ENCODE Processing Pipeline a6e815cdcf02c454ed4263080cde6af6 https://www.encodeproject.org/files/ENCFF346SWX/@@download/ENCFF346SWX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF974FOR bigWig signal p-value ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF392XRJ, ENCFF829HZY, ENCFF954PRL 547078021 ENCODE Processing Pipeline 6e19b928072899f7a24bcac91f98be38 https://www.encodeproject.org/files/ENCFF974FOR/@@download/ENCFF974FOR.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF687ZGN bigWig fold change over control ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF781JEI, ENCFF829HZY, ENCFF954PRL 487179199 ENCODE Processing Pipeline a503e6edb8298b0fc07b3296355dc42d https://www.encodeproject.org/files/ENCFF687ZGN/@@download/ENCFF687ZGN.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF945YDN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF456PQY 265156 ENCODE Processing Pipeline 60dd524c95937a3bf1c19c336e8a2e11 https://www.encodeproject.org/files/ENCFF945YDN/@@download/ENCFF945YDN.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF342VRO bigBed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF391THL 12487322 ENCODE Processing Pipeline e7e5e6145903994ed1c2736c2f683a47 https://www.encodeproject.org/files/ENCFF342VRO/@@download/ENCFF342VRO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF712QIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF436VLT 170474 ENCODE Processing Pipeline 3e598446d19e7deeeb798f09eaf4728a https://www.encodeproject.org/files/ENCFF712QIM/@@download/ENCFF712QIM.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF456PQY bed narrowPeak optimal idr thresholded peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF259GGN, ENCFF878IXX, ENCFF899WHU 84138 ENCODE Processing Pipeline fd9253bc90bc6d93040317f11af2b98a https://www.encodeproject.org/files/ENCFF456PQY/@@download/ENCFF456PQY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF878EAM bigBed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064CHN 12888479 ENCODE Processing Pipeline 37c96bfc2a4c151c28cd13c36dc9ee3c https://www.encodeproject.org/files/ENCFF878EAM/@@download/ENCFF878EAM.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF572ILR fastq reads ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 1487546557 Richard Myers, HAIB e546d8068240704042bb073ab5965521 SRA:SRR5331634 https://www.encodeproject.org/files/ENCFF572ILR/@@download/ENCFF572ILR.fastq.gz Illumina HiSeq 2000 /files/ENCFF158AFC/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF946YUW fastq reads ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 1129854692 Richard Myers, HAIB 1243ada07163cd6c497a721430446fa6 SRA:SRR5331635 https://www.encodeproject.org/files/ENCFF946YUW/@@download/ENCFF946YUW.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF679HGX bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF946YUW 902635311 ENCODE Processing Pipeline 60cb2508d4df87d98e8e405a956afad3 https://www.encodeproject.org/files/ENCFF679HGX/@@download/ENCFF679HGX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF509HEN bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF572ILR, ENCFF807MUK 1241164875 ENCODE Processing Pipeline bd7a82e082076e15490a8c859c3ac549 https://www.encodeproject.org/files/ENCFF509HEN/@@download/ENCFF509HEN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF903KIH bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF509HEN, ENCFF679HGX, ENCFF991UTU 6930061 ENCODE Processing Pipeline 8ef9dc98da53c3a9dc38f185b8dbcb10 https://www.encodeproject.org/files/ENCFF903KIH/@@download/ENCFF903KIH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF658ZSM bigWig signal p-value ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF679HGX, ENCFF991UTU 565920269 ENCODE Processing Pipeline 2eec99721f5a6ff528e7f65963101469 https://www.encodeproject.org/files/ENCFF658ZSM/@@download/ENCFF658ZSM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF225XDH bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF679HGX, ENCFF991UTU 5589494 ENCODE Processing Pipeline 76ffd2dbee137855d63fc7369ff33c6c https://www.encodeproject.org/files/ENCFF225XDH/@@download/ENCFF225XDH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF407JBN bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF509HEN 5965134 ENCODE Processing Pipeline 27452cd06f2a29eb47a384396a5eea1e https://www.encodeproject.org/files/ENCFF407JBN/@@download/ENCFF407JBN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF664PAV bigWig signal p-value ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF509HEN 725069467 ENCODE Processing Pipeline 20955efa8c2eb8efa16226f15e96c33d https://www.encodeproject.org/files/ENCFF664PAV/@@download/ENCFF664PAV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF402RDL bigWig signal p-value ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF509HEN, ENCFF679HGX, ENCFF991UTU 1206095024 ENCODE Processing Pipeline 48e28a1679258bb1ff6786c6afb0622f https://www.encodeproject.org/files/ENCFF402RDL/@@download/ENCFF402RDL.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF688EXM bigWig fold change over control ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF359TIO, ENCFF509HEN, ENCFF679HGX, ENCFF991UTU 1176092114 ENCODE Processing Pipeline 306c8c294fb3aa06689003aa29b92005 https://www.encodeproject.org/files/ENCFF688EXM/@@download/ENCFF688EXM.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF038QAZ bigBed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF407JBN 13384859 ENCODE Processing Pipeline c4007d51c5d090aefbedef8c317e579b https://www.encodeproject.org/files/ENCFF038QAZ/@@download/ENCFF038QAZ.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF209WNJ bigWig fold change over control ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF679HGX, ENCFF991UTU 504883010 ENCODE Processing Pipeline c39f1d154a29bc04ceca92d2a44a6c6d https://www.encodeproject.org/files/ENCFF209WNJ/@@download/ENCFF209WNJ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF406ZCR bigBed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF225XDH 13403759 ENCODE Processing Pipeline 2aaaf45516786cd4821e9f8a4d3426cd https://www.encodeproject.org/files/ENCFF406ZCR/@@download/ENCFF406ZCR.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF039AEC bigBed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF903KIH 13318328 ENCODE Processing Pipeline 6d76ccbd82c7977339358ae2c190a383 https://www.encodeproject.org/files/ENCFF039AEC/@@download/ENCFF039AEC.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF712MOA bigWig fold change over control ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF509HEN 580318142 ENCODE Processing Pipeline 6a65396bf3e789a2bb706446feb3d1cb https://www.encodeproject.org/files/ENCFF712MOA/@@download/ENCFF712MOA.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF032LOP bam unfiltered alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF572ILR, ENCFF643CGH 1662956973 ENCODE Processing Pipeline 7f00a9a78bba0016a1949942eef027c9 https://www.encodeproject.org/files/ENCFF032LOP/@@download/ENCFF032LOP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF123EQA bam unfiltered alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF946YUW 1253286706 ENCODE Processing Pipeline cd9f268dafb548d5fb261ba47fc1cfe7 https://www.encodeproject.org/files/ENCFF123EQA/@@download/ENCFF123EQA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF007QLT bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF946YUW 902698626 ENCODE Processing Pipeline 0c51fadab7c629225bcb73d4c1b9d609 https://www.encodeproject.org/files/ENCFF007QLT/@@download/ENCFF007QLT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF661OJT bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF572ILR, ENCFF643CGH 1241300465 ENCODE Processing Pipeline 44e93caeb21013f860bd4d38bf2fb51a https://www.encodeproject.org/files/ENCFF661OJT/@@download/ENCFF661OJT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF554DRV bigWig signal p-value ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF661OJT, ENCFF985NSN 577643646 ENCODE Processing Pipeline 4d9947b25f6a988a35dc0b70fa1f6af8 https://www.encodeproject.org/files/ENCFF554DRV/@@download/ENCFF554DRV.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF417XKZ bigWig signal p-value ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF007QLT, ENCFF370PSF 499526691 ENCODE Processing Pipeline 1decfb3a5f6981b48a9adfcc5fdc2e8c https://www.encodeproject.org/files/ENCFF417XKZ/@@download/ENCFF417XKZ.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF662VRT bigWig fold change over control ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF007QLT, ENCFF370PSF, ENCFF661OJT, ENCFF985NSN 1186072284 ENCODE Processing Pipeline ceef37e8fb89493bf983871986169fbb https://www.encodeproject.org/files/ENCFF662VRT/@@download/ENCFF662VRT.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF168EOV bigBed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF777TAV 13382765 ENCODE Processing Pipeline a543e55b7ea47f49fde95e3ebc069170 https://www.encodeproject.org/files/ENCFF168EOV/@@download/ENCFF168EOV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF658YIM bigWig fold change over control ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF661OJT, ENCFF985NSN 583530737 ENCODE Processing Pipeline 4d44ab22126e1714471dd8013d58e7d1 https://www.encodeproject.org/files/ENCFF658YIM/@@download/ENCFF658YIM.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF994NGF bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF661OJT, ENCFF985NSN 5717140 ENCODE Processing Pipeline f1a78bd366ef89bb3ebb5bbc08d66f31 https://www.encodeproject.org/files/ENCFF994NGF/@@download/ENCFF994NGF.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF150OOU bigWig signal p-value ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF007QLT, ENCFF370PSF, ENCFF661OJT, ENCFF985NSN 1108271704 ENCODE Processing Pipeline 07dad2d20a7ef72b0de1c21aec5c9d04 https://www.encodeproject.org/files/ENCFF150OOU/@@download/ENCFF150OOU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF977MOV bed narrowPeak conservative idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF777TAV, ENCFF782XGQ, ENCFF994NGF 253604 ENCODE Processing Pipeline a1b4e1fb75ab874cb6678ebbe8b83d53 https://www.encodeproject.org/files/ENCFF977MOV/@@download/ENCFF977MOV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF304XON bigBed narrowPeak conservative idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF977MOV 664549 ENCODE Processing Pipeline eebcd74e7e13884ba03c534e35e89cb7 https://www.encodeproject.org/files/ENCFF304XON/@@download/ENCFF304XON.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF343PUR bigWig fold change over control ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF007QLT, ENCFF370PSF 507076444 ENCODE Processing Pipeline f92b4d75d156318f1194b4bc0418aa88 https://www.encodeproject.org/files/ENCFF343PUR/@@download/ENCFF343PUR.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF777TAV bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF007QLT, ENCFF370PSF 5384580 ENCODE Processing Pipeline 0c58c4b2df489b1b24b19c72c6d08058 https://www.encodeproject.org/files/ENCFF777TAV/@@download/ENCFF777TAV.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF782XGQ bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF007QLT, ENCFF370PSF, ENCFF661OJT, ENCFF985NSN 6769710 ENCODE Processing Pipeline d57597af4690c9f30bd56ad01244eb29 https://www.encodeproject.org/files/ENCFF782XGQ/@@download/ENCFF782XGQ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF039LVN bigBed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF994NGF 13385484 ENCODE Processing Pipeline 11609765e8613e6fe9db919eb6e40724 https://www.encodeproject.org/files/ENCFF039LVN/@@download/ENCFF039LVN.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF383NRF bigBed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF782XGQ 13338017 ENCODE Processing Pipeline 6c4972fe81f515dd7220ebb20c791c8d https://www.encodeproject.org/files/ENCFF383NRF/@@download/ENCFF383NRF.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF214OJW bed narrowPeak optimal idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF419RSJ, ENCFF777TAV, ENCFF782XGQ, ENCFF994NGF 276432 ENCODE Processing Pipeline 3853489bcbb072f701882fce6a6c48c0 https://www.encodeproject.org/files/ENCFF214OJW/@@download/ENCFF214OJW.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF198BFX bigBed narrowPeak optimal idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF214OJW 712994 ENCODE Processing Pipeline 654d860f92314db55f87767036a41cf1 https://www.encodeproject.org/files/ENCFF198BFX/@@download/ENCFF198BFX.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF195UXI bam unfiltered alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF572ILR, ENCFF807MUK 1654151238 ENCODE Processing Pipeline dbc50c3d1a8f79a0ee5ad9b6b9549699 https://www.encodeproject.org/files/ENCFF195UXI/@@download/ENCFF195UXI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF529TFX bam unfiltered alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF946YUW 1246497379 ENCODE Processing Pipeline b98be179dacda8ff4f5888c38f55454d https://www.encodeproject.org/files/ENCFF529TFX/@@download/ENCFF529TFX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF151OYY bed narrowPeak conservative idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF225XDH, ENCFF407JBN, ENCFF903KIH 220928 ENCODE Processing Pipeline dc91a1eee935d085a6d1b75db21039b6 https://www.encodeproject.org/files/ENCFF151OYY/@@download/ENCFF151OYY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF739PUT bed narrowPeak optimal idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF225XDH, ENCFF407JBN, ENCFF903KIH 240640 ENCODE Processing Pipeline 0de78ae36c8572df537336ab5bdb9f6d https://www.encodeproject.org/files/ENCFF739PUT/@@download/ENCFF739PUT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF180MKB bigBed narrowPeak conservative idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF151OYY 510918 ENCODE Processing Pipeline 348dc6150bcc6b8b6bcc4d3ad91a27ca https://www.encodeproject.org/files/ENCFF180MKB/@@download/ENCFF180MKB.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF635KVN bigBed narrowPeak optimal idr thresholded peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF739PUT 544769 ENCODE Processing Pipeline e96909f4c125041987f53fc4f66728c3 https://www.encodeproject.org/files/ENCFF635KVN/@@download/ENCFF635KVN.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF000WSN bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 1 578780703 Michael Snyder, Stanford 4b8aa3d818791b4b8e4b861d2a8ee0f5 https://www.encodeproject.org/files/ENCFF000WSN/@@download/ENCFF000WSN.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WSO bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 1 479465331 Michael Snyder, Stanford 1f1cc84e2ce0e551cf19e733ee568ea0 https://www.encodeproject.org/files/ENCFF000WSO/@@download/ENCFF000WSO.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WSP bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VGV 2178580 Michael Snyder, Stanford a7730bedee6fe9ce9640cb2a1b27be1f https://www.encodeproject.org/files/ENCFF000WSP/@@download/ENCFF000WSP.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSQ fastq reads ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1136236421 Michael Snyder, Stanford a0ea4234bd5f544557bbef74f990b46c https://www.encodeproject.org/files/ENCFF000WSQ/@@download/ENCFF000WSQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSS fastq reads ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 830730523 Michael Snyder, Stanford 00e86f8f398cef2bba7949edc7eaecf7 https://www.encodeproject.org/files/ENCFF000WSS/@@download/ENCFF000WSS.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WSU bigWig signal ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 394705129 Michael Snyder, Stanford 3d86b6dc11bee5d9deab6300acef9195 https://www.encodeproject.org/files/ENCFF000WSU/@@download/ENCFF000WSU.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VGV bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 934253 Michael Snyder, Stanford 6e5c04fde1d33f2ccc96047e83637d1c https://www.encodeproject.org/files/ENCFF001VGV/@@download/ENCFF001VGV.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CQX bed narrowPeak optimal idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 94669 ENCODE Consortium Analysis Working Group 427a7b651ee385dd96cfceb8e2f7a08d https://www.encodeproject.org/files/ENCFF002CQX/@@download/ENCFF002CQX.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF300NRF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CQX 294863 ENCODE Consortium f233f22b15b1dcf6c860ffeffae73034 https://www.encodeproject.org/files/ENCFF300NRF/@@download/ENCFF300NRF.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760ZDJ bam unfiltered alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSS, ENCFF643CGH 949433373 ENCODE Processing Pipeline 20d8325811f8de9c87a2a869dfacc000 https://www.encodeproject.org/files/ENCFF760ZDJ/@@download/ENCFF760ZDJ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF484ZQH bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSS, ENCFF643CGH 649263647 ENCODE Processing Pipeline a137805b04f5ead88a448b33574b9b3d https://www.encodeproject.org/files/ENCFF484ZQH/@@download/ENCFF484ZQH.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF995YFW bam unfiltered alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSQ, ENCFF643CGH 1324911485 ENCODE Processing Pipeline ae8a2cc9ba89d61b545c59f5e5568137 https://www.encodeproject.org/files/ENCFF995YFW/@@download/ENCFF995YFW.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF358UEX bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSQ, ENCFF643CGH 915491574 ENCODE Processing Pipeline 18927c2487202dde9bbdfdca7fbac1d6 https://www.encodeproject.org/files/ENCFF358UEX/@@download/ENCFF358UEX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF464XMG bam unfiltered alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSS, ENCFF807MUK 945868741 ENCODE Processing Pipeline 15f4af1c853852a1aa991d0e06c65785 https://www.encodeproject.org/files/ENCFF464XMG/@@download/ENCFF464XMG.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF994KPN bam unfiltered alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSQ, ENCFF807MUK 1319374442 ENCODE Processing Pipeline 45492f05031506aaa99bd2d8a4d5edac https://www.encodeproject.org/files/ENCFF994KPN/@@download/ENCFF994KPN.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509UIP bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSS, ENCFF807MUK 649681422 ENCODE Processing Pipeline 1ef9484f65315fe669b544c3506a6199 https://www.encodeproject.org/files/ENCFF509UIP/@@download/ENCFF509UIP.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF211HZM bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSQ, ENCFF807MUK 915917420 ENCODE Processing Pipeline 61de88b2a1a5d5199ad34338a48756f8 https://www.encodeproject.org/files/ENCFF211HZM/@@download/ENCFF211HZM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF108AXL bigWig signal p-value ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF358UEX, ENCFF513EWK 517580039 ENCODE Processing Pipeline 33c46180a3a3219aa0827d72a14653cf https://www.encodeproject.org/files/ENCFF108AXL/@@download/ENCFF108AXL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF210VUB bigWig signal p-value ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF484ZQH, ENCFF513EWK 516738888 ENCODE Processing Pipeline 83fcbb2ab154d8bd04d2298a2a44ffa3 https://www.encodeproject.org/files/ENCFF210VUB/@@download/ENCFF210VUB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF024EFB bigWig signal p-value ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF358UEX, ENCFF484ZQH, ENCFF513EWK 730736858 ENCODE Processing Pipeline 26256da4d264d94ee367094a9f9cd860 https://www.encodeproject.org/files/ENCFF024EFB/@@download/ENCFF024EFB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF454ZYL bigWig fold change over control ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF358UEX, ENCFF513EWK 476558642 ENCODE Processing Pipeline f06694e48bcd1de981aee4759384d0ee https://www.encodeproject.org/files/ENCFF454ZYL/@@download/ENCFF454ZYL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF173BEC bigWig fold change over control ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF358UEX, ENCFF484ZQH, ENCFF513EWK 716773038 ENCODE Processing Pipeline a4fa5637164a6d63a95cab50c2350689 https://www.encodeproject.org/files/ENCFF173BEC/@@download/ENCFF173BEC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF064XHF bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF358UEX, ENCFF513EWK 4873192 ENCODE Processing Pipeline 425a7c7f9eabd2fe4ff5b4cc6ec59dd6 https://www.encodeproject.org/files/ENCFF064XHF/@@download/ENCFF064XHF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF674VXI bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF484ZQH, ENCFF513EWK 4202816 ENCODE Processing Pipeline f9fcb41b2904007484dcbd537d7cc5e2 https://www.encodeproject.org/files/ENCFF674VXI/@@download/ENCFF674VXI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF612ORB bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF358UEX, ENCFF484ZQH, ENCFF513EWK 2393059 ENCODE Processing Pipeline 70ddbcaf2b10c6fb807a62520441ec7c https://www.encodeproject.org/files/ENCFF612ORB/@@download/ENCFF612ORB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF493PRB bed narrowPeak optimal idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF064XHF, ENCFF419RSJ, ENCFF612ORB, ENCFF674VXI 77391 ENCODE Processing Pipeline abdfbf0352aa633ace1fd3e2d5383d54 https://www.encodeproject.org/files/ENCFF493PRB/@@download/ENCFF493PRB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF270LCI bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF064XHF 11238745 ENCODE Processing Pipeline 2402ab41c4b2954a5a626c8564ff0dfa https://www.encodeproject.org/files/ENCFF270LCI/@@download/ENCFF270LCI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF601LZH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF975QOI 164624 ENCODE Processing Pipeline d07cd191bd3d29ca89e40e7c3d4f1c44 https://www.encodeproject.org/files/ENCFF601LZH/@@download/ENCFF601LZH.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500KUC bigWig fold change over control ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF484ZQH, ENCFF513EWK 395672596 ENCODE Processing Pipeline 57c465931b8b279e6136d9e50666cc26 https://www.encodeproject.org/files/ENCFF500KUC/@@download/ENCFF500KUC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF905EML bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF674VXI 10800382 ENCODE Processing Pipeline 8ab3da75e87fe80b22613234b580da80 https://www.encodeproject.org/files/ENCFF905EML/@@download/ENCFF905EML.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF320GPS bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF612ORB 4980729 ENCODE Processing Pipeline e2e2351f2c6e19d320e5ab07d7067724 https://www.encodeproject.org/files/ENCFF320GPS/@@download/ENCFF320GPS.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF975QOI bed narrowPeak conservative idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF064XHF, ENCFF419RSJ, ENCFF612ORB, ENCFF674VXI 70480 ENCODE Processing Pipeline 257a23d7258cb489ed2da1e0115bdff4 https://www.encodeproject.org/files/ENCFF975QOI/@@download/ENCFF975QOI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF603ZFQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF493PRB 174410 ENCODE Processing Pipeline 947da5a80c4a924e0b10db5592872813 https://www.encodeproject.org/files/ENCFF603ZFQ/@@download/ENCFF603ZFQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF817ZGN bigWig fold change over control ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509UIP, ENCFF599MVB 403116066 ENCODE Processing Pipeline a97d9e7b9adf6dd4888f1e5a074177da https://www.encodeproject.org/files/ENCFF817ZGN/@@download/ENCFF817ZGN.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF211BEL bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211HZM, ENCFF599MVB 4970402 ENCODE Processing Pipeline e2bb22eb97f2e1a74fb4cdb2b7e3c270 https://www.encodeproject.org/files/ENCFF211BEL/@@download/ENCFF211BEL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF628FNQ bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211BEL 11264932 ENCODE Processing Pipeline bbe96496ecec8fc7b460ecd2484c3087 https://www.encodeproject.org/files/ENCFF628FNQ/@@download/ENCFF628FNQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF750MMS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF214III 163956 ENCODE Processing Pipeline d1b1ca6b73ded52f8969bbc62c6a112d https://www.encodeproject.org/files/ENCFF750MMS/@@download/ENCFF750MMS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF205YOD bed narrowPeak optimal idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF211BEL, ENCFF258FIQ, ENCFF449PNR 77008 ENCODE Processing Pipeline c922c340580a815e7117f367dda72e7b https://www.encodeproject.org/files/ENCFF205YOD/@@download/ENCFF205YOD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF214III bed narrowPeak conservative idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF211BEL, ENCFF258FIQ, ENCFF449PNR 71246 ENCODE Processing Pipeline 66faf66aeec3c2482615d3d5f6b078aa https://www.encodeproject.org/files/ENCFF214III/@@download/ENCFF214III.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF015AXC bigWig fold change over control ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211HZM, ENCFF599MVB 471086238 ENCODE Processing Pipeline 6ef2407b890084cfdbfec46e28073bf3 https://www.encodeproject.org/files/ENCFF015AXC/@@download/ENCFF015AXC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF449PNR bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509UIP, ENCFF599MVB 4398599 ENCODE Processing Pipeline 0fa25558b252e59dedb6b6c2d0c0b540 https://www.encodeproject.org/files/ENCFF449PNR/@@download/ENCFF449PNR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF143AES bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF258FIQ 5271958 ENCODE Processing Pipeline 1b62e75d362146f60531479c54fb255e https://www.encodeproject.org/files/ENCFF143AES/@@download/ENCFF143AES.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF607KWG bigWig signal p-value ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211HZM, ENCFF599MVB 685750007 ENCODE Processing Pipeline 46af5368084965a8c7c6c662aca982e8 https://www.encodeproject.org/files/ENCFF607KWG/@@download/ENCFF607KWG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF881LAU bigWig signal p-value ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509UIP, ENCFF599MVB 623006227 ENCODE Processing Pipeline 6386950473dffc1066e480c4afef889a https://www.encodeproject.org/files/ENCFF881LAU/@@download/ENCFF881LAU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF905IQV bigWig fold change over control ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211HZM, ENCFF509UIP, ENCFF599MVB 726835991 ENCODE Processing Pipeline 45151e547060fcc7d3762b8c97695229 https://www.encodeproject.org/files/ENCFF905IQV/@@download/ENCFF905IQV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF660FEE bigWig signal p-value ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211HZM, ENCFF509UIP, ENCFF599MVB 731460579 ENCODE Processing Pipeline a0ac61cfd7a256582c08934e22ba2500 https://www.encodeproject.org/files/ENCFF660FEE/@@download/ENCFF660FEE.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF258FIQ bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF211HZM, ENCFF509UIP, ENCFF599MVB 2564432 ENCODE Processing Pipeline 6475da1bf20d75d5acc111e05a5af304 https://www.encodeproject.org/files/ENCFF258FIQ/@@download/ENCFF258FIQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF866FRG bigBed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF449PNR 10996833 ENCODE Processing Pipeline 5769215e4cfa195b1b0357bbc5fe448d https://www.encodeproject.org/files/ENCFF866FRG/@@download/ENCFF866FRG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF922KXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF205YOD 173161 ENCODE Processing Pipeline 080af09eb10bf53eb6f741974b7bba89 https://www.encodeproject.org/files/ENCFF922KXQ/@@download/ENCFF922KXQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NSQ bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NTD 798310641 Richard Myers, HAIB 14d6536cf61a080893a59b58195b0088 https://www.encodeproject.org/files/ENCFF000NSQ/@@download/ENCFF000NSQ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSR bigBed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TWH 592417 Richard Myers, HAIB e3c7a6a983e9af6c40f899d97ad0ea12 https://www.encodeproject.org/files/ENCFF000NSR/@@download/ENCFF000NSR.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSS bigBed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TWI 642458 Richard Myers, HAIB 8f6af20793dca306c34e7b47baacfd4f https://www.encodeproject.org/files/ENCFF000NSS/@@download/ENCFF000NSS.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NST bigWig raw signal ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 18875729 Richard Myers, HAIB dddabb53ed22eb305e670e1f3c9b4203 https://www.encodeproject.org/files/ENCFF000NST/@@download/ENCFF000NST.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NSU bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NTH 1036320033 Richard Myers, HAIB 08f595f266aa5717c6b9c3799fad10ab https://www.encodeproject.org/files/ENCFF000NSU/@@download/ENCFF000NSU.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NSV bigWig raw signal ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 23184417 Richard Myers, HAIB 21d22c190b57dc86138d137b2fdb1345 https://www.encodeproject.org/files/ENCFF000NSV/@@download/ENCFF000NSV.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000NTD fastq reads ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 916514718 Richard Myers, HAIB b9b3ef998932ad5d5b1fa6ea0c9043b8 https://www.encodeproject.org/files/ENCFF000NTD/@@download/ENCFF000NTD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF000NTH fastq reads ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1744280834 Richard Myers, HAIB b94fc9c3ce2176aff652256f3edd098e https://www.encodeproject.org/files/ENCFF000NTH/@@download/ENCFF000NTH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF001TWH bed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 1 335357 Richard Myers, HAIB 37c8310d98d70a714fa58cd95d8b977c https://www.encodeproject.org/files/ENCFF001TWH/@@download/ENCFF001TWH.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001TWI bed broadPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 393755 Richard Myers, HAIB 92fd2779ecf7b7233e63ecfe59d28586 https://www.encodeproject.org/files/ENCFF001TWI/@@download/ENCFF001TWI.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CGR bed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 348483 ENCODE Consortium Analysis Working Group 52a244b336de35419f0cd40fab2edae1 https://www.encodeproject.org/files/ENCFF002CGR/@@download/ENCFF002CGR.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF201UXH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CGR 802318 ENCODE Consortium 39fa2c3d07d702aa4b92455811c0c298 https://www.encodeproject.org/files/ENCFF201UXH/@@download/ENCFF201UXH.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF272XDG bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF643CGH 1175272994 ENCODE Processing Pipeline 74d23f5a035ddfef73828dddc7502f62 https://www.encodeproject.org/files/ENCFF272XDG/@@download/ENCFF272XDG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF580GMF bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF643CGH 602501977 ENCODE Processing Pipeline 94b4053388ea077f3747ac5ca8b62eeb https://www.encodeproject.org/files/ENCFF580GMF/@@download/ENCFF580GMF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF724BUK bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF643CGH 2081958734 ENCODE Processing Pipeline e9c97b52ef4a39d181c3f89b088be1c6 https://www.encodeproject.org/files/ENCFF724BUK/@@download/ENCFF724BUK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF942EVB bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF643CGH 659787864 ENCODE Processing Pipeline 345745904ae4ca112c8baf19fe967213 https://www.encodeproject.org/files/ENCFF942EVB/@@download/ENCFF942EVB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF197DUH bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF807MUK 602023696 ENCODE Processing Pipeline d0dd6cf2fb23ac07a469f78a48d255fe https://www.encodeproject.org/files/ENCFF197DUH/@@download/ENCFF197DUH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF481NAE bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF807MUK 1171825458 ENCODE Processing Pipeline d4a6c28ae9f699894173cacaae282486 https://www.encodeproject.org/files/ENCFF481NAE/@@download/ENCFF481NAE.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF264DVB bam unfiltered alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF807MUK 2074883303 ENCODE Processing Pipeline e6f64c30c39e50c7d5062b5ec57ed535 https://www.encodeproject.org/files/ENCFF264DVB/@@download/ENCFF264DVB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF671MIT bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF807MUK 653477560 ENCODE Processing Pipeline 269bab4ee54ad9d3479c0b3d763640b3 https://www.encodeproject.org/files/ENCFF671MIT/@@download/ENCFF671MIT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF259YEO bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF580GMF 451602544 ENCODE Processing Pipeline 3b420512124039be983869c261873117 https://www.encodeproject.org/files/ENCFF259YEO/@@download/ENCFF259YEO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF189FMI bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF942EVB 408148080 ENCODE Processing Pipeline 745b72aefb2023900b870e93b343f5ee https://www.encodeproject.org/files/ENCFF189FMI/@@download/ENCFF189FMI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF477CIW bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF580GMF, ENCFF942EVB 5676608 ENCODE Processing Pipeline a91e86375410e2cf92fb9e8992e1e8c0 https://www.encodeproject.org/files/ENCFF477CIW/@@download/ENCFF477CIW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF698MPT bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF580GMF, ENCFF942EVB 784304258 ENCODE Processing Pipeline aca7e50c0b2ebf4db366dd147881b062 https://www.encodeproject.org/files/ENCFF698MPT/@@download/ENCFF698MPT.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF531WVY bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF580GMF 272400610 ENCODE Processing Pipeline 8f47b4b78b9862978aa8503c81526dac https://www.encodeproject.org/files/ENCFF531WVY/@@download/ENCFF531WVY.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF898IWR bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF438FFV, ENCFF562HPN, ENCFF580GMF, ENCFF942EVB 622052740 ENCODE Processing Pipeline 35a7b6655d8601bfc941cd3598f6f183 https://www.encodeproject.org/files/ENCFF898IWR/@@download/ENCFF898IWR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF387RPM bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF942EVB 4558380 ENCODE Processing Pipeline 5a65843678ca994a33aeb8ec78b8a45c https://www.encodeproject.org/files/ENCFF387RPM/@@download/ENCFF387RPM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF242YZT bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF387RPM 10528558 ENCODE Processing Pipeline ff8d0894c6afd70110a612047b2a5548 https://www.encodeproject.org/files/ENCFF242YZT/@@download/ENCFF242YZT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF582ENM bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF477CIW 11274116 ENCODE Processing Pipeline 065579ea712626634eff1a6e36bfe9bc https://www.encodeproject.org/files/ENCFF582ENM/@@download/ENCFF582ENM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF383HAY bed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387RPM, ENCFF419RSJ, ENCFF422WOY, ENCFF477CIW 328184 ENCODE Processing Pipeline c5947f54d87171e46178f9074dfe3a23 https://www.encodeproject.org/files/ENCFF383HAY/@@download/ENCFF383HAY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF885IAM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF383HAY 624319 ENCODE Processing Pipeline 4a55db64b31272c0da2bf7feab60cd5c https://www.encodeproject.org/files/ENCFF885IAM/@@download/ENCFF885IAM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF330IWH bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF942EVB 275005443 ENCODE Processing Pipeline 438ca0332e8a7a1818dbee39ad7bf600 https://www.encodeproject.org/files/ENCFF330IWH/@@download/ENCFF330IWH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF739LNZ bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF422WOY 10591326 ENCODE Processing Pipeline 4664fd30f04a29e9ab990de25bc6ff61 https://www.encodeproject.org/files/ENCFF739LNZ/@@download/ENCFF739LNZ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF800HNH bed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387RPM, ENCFF419RSJ, ENCFF422WOY, ENCFF477CIW 269469 ENCODE Processing Pipeline dd0026780d77710d5d385765ea0da957 https://www.encodeproject.org/files/ENCFF800HNH/@@download/ENCFF800HNH.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF422WOY bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF580GMF 4506731 ENCODE Processing Pipeline dfcbaee834de0215d635b6817c9ea54d https://www.encodeproject.org/files/ENCFF422WOY/@@download/ENCFF422WOY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF425CMP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF800HNH 541580 ENCODE Processing Pipeline d44311431813cbe6cc3655e0d8170c0f https://www.encodeproject.org/files/ENCFF425CMP/@@download/ENCFF425CMP.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF474WLQ bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 480537953 ENCODE Processing Pipeline 584503fdacd8a923f1e032b91af6521b https://www.encodeproject.org/files/ENCFF474WLQ/@@download/ENCFF474WLQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF153DRT bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 408212598 ENCODE Processing Pipeline 5fe3d9b14e0d68d6f8a7dfa230a0f88b https://www.encodeproject.org/files/ENCFF153DRT/@@download/ENCFF153DRT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF805DGI bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 273215822 ENCODE Processing Pipeline 1bc89594f13a0f6c011bdadb59a546f6 https://www.encodeproject.org/files/ENCFF805DGI/@@download/ENCFF805DGI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF777JWC bigWig signal p-value ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF197DUH, ENCFF671MIT, ENCFF837IOW, ENCFF958RTR 934078028 ENCODE Processing Pipeline 5d10c6da8dc477218594e95a80c78edb https://www.encodeproject.org/files/ENCFF777JWC/@@download/ENCFF777JWC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF495MTX bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 274629450 ENCODE Processing Pipeline 61fad61894c350b97895ccf041fc8103 https://www.encodeproject.org/files/ENCFF495MTX/@@download/ENCFF495MTX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF822XUX bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF046PLS 10679652 ENCODE Processing Pipeline 4af08eb3bb0aa9ff8e2a8e29d8c5ee1c https://www.encodeproject.org/files/ENCFF822XUX/@@download/ENCFF822XUX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF409EVE bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289FQM 10636739 ENCODE Processing Pipeline f016e6eba255be4100a258ea81eb6cb1 https://www.encodeproject.org/files/ENCFF409EVE/@@download/ENCFF409EVE.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF667QBX bigBed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080MVF 11365028 ENCODE Processing Pipeline a5f1b771fb481a6d6b671a52c2e462eb https://www.encodeproject.org/files/ENCFF667QBX/@@download/ENCFF667QBX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF049DFX bigWig fold change over control ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF197DUH, ENCFF671MIT, ENCFF837IOW, ENCFF958RTR 647577344 ENCODE Processing Pipeline 2e174e6ffcdec803eb133c5bb3ea431b https://www.encodeproject.org/files/ENCFF049DFX/@@download/ENCFF049DFX.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF080MVF bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF197DUH, ENCFF671MIT, ENCFF837IOW, ENCFF958RTR 5751017 ENCODE Processing Pipeline 97971d74f93cbb224e9ceeada695cfb3 https://www.encodeproject.org/files/ENCFF080MVF/@@download/ENCFF080MVF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF046PLS bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 4572072 ENCODE Processing Pipeline a49f776dcecfc81d1074693be4a16e5e https://www.encodeproject.org/files/ENCFF046PLS/@@download/ENCFF046PLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF289FQM bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 4637535 ENCODE Processing Pipeline adf6c66b00665025515bad11517e18ef https://www.encodeproject.org/files/ENCFF289FQM/@@download/ENCFF289FQM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF220QMP bed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF046PLS, ENCFF080MVF, ENCFF289FQM 276903 ENCODE Processing Pipeline b25a27c2324b76b9f5e1fa777f7be77d https://www.encodeproject.org/files/ENCFF220QMP/@@download/ENCFF220QMP.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF441FOB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF220QMP 553783 ENCODE Processing Pipeline 33dffaa392b6ca1c693456ea2812355e https://www.encodeproject.org/files/ENCFF441FOB/@@download/ENCFF441FOB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF143BUR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF468MFY 654468 ENCODE Processing Pipeline 998f12cc78ae685341e96bfce7ab19e0 https://www.encodeproject.org/files/ENCFF143BUR/@@download/ENCFF143BUR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF468MFY bed narrowPeak optimal idr thresholded peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF046PLS, ENCFF080MVF, ENCFF289FQM 345367 ENCODE Processing Pipeline 7f180aca1612b6d01a7e549b1e685303 https://www.encodeproject.org/files/ENCFF468MFY/@@download/ENCFF468MFY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000QOQ bam alignments ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPH 2024399663 Richard Myers, HAIB 24744a2dad28411511cf0ad0a440e1d2 https://www.encodeproject.org/files/ENCFF000QOQ/@@download/ENCFF000QOQ.bam hg19 released biological replicates with identical biosample ENCFF000QOR bam alignments ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QPE 824362608 Richard Myers, HAIB 93220675d33f92d751871252a688d720 https://www.encodeproject.org/files/ENCFF000QOR/@@download/ENCFF000QOR.bam hg19 released biological replicates with identical biosample ENCFF000QOT bigBed broadPeak peaks ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UNH 231656 Richard Myers, HAIB d124fdd404349a330584e96d516b5728 https://www.encodeproject.org/files/ENCFF000QOT/@@download/ENCFF000QOT.bigBed hg19 released biological replicates with identical biosample ENCFF000QOU bigBed broadPeak peaks ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNI 200631 Richard Myers, HAIB 3021466497eaba199b41e31512eb2c40 https://www.encodeproject.org/files/ENCFF000QOU/@@download/ENCFF000QOU.bigBed hg19 released biological replicates with identical biosample ENCFF000QOW bigWig raw signal ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 249456373 Richard Myers, HAIB 55d206a49c9173526203a690f8bd71ca https://www.encodeproject.org/files/ENCFF000QOW/@@download/ENCFF000QOW.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QOX bigWig raw signal ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 99517672 Richard Myers, HAIB 037bbd27e430af851fd5ad3dbcd4845b https://www.encodeproject.org/files/ENCFF000QOX/@@download/ENCFF000QOX.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QPE fastq reads ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 846459024 Richard Myers, HAIB 105bfc1a8a566c4c41c7e892dd1bc65f https://www.encodeproject.org/files/ENCFF000QPE/@@download/ENCFF000QPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF000QPH fastq reads ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2150429692 Richard Myers, HAIB f0a70de3222de899f1202080b53de13c https://www.encodeproject.org/files/ENCFF000QPH/@@download/ENCFF000QPH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UNH bed broadPeak peaks ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 1 119935 Richard Myers, HAIB a29cef03c0b19882f541b7b7ea9179ae https://www.encodeproject.org/files/ENCFF001UNH/@@download/ENCFF001UNH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UNI bed broadPeak peaks ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 1 99050 Richard Myers, HAIB 47d53daaf01e0c71135611bcbebe995e https://www.encodeproject.org/files/ENCFF001UNI/@@download/ENCFF001UNI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000MWO bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MXC 1822518556 Richard Myers, HAIB c086b108a2796a33df5a19bae8be882f https://www.encodeproject.org/files/ENCFF000MWO/@@download/ENCFF000MWO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000MWP bigBed broadPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TRM 480313 Richard Myers, HAIB d4fd00b8220bb97fc8d3485999d7497c https://www.encodeproject.org/files/ENCFF000MWP/@@download/ENCFF000MWP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000MWQ bigBed broadPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TRN 501844 Richard Myers, HAIB 75785c6418a69fbf47312bf783294f20 https://www.encodeproject.org/files/ENCFF000MWQ/@@download/ENCFF000MWQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000MWS bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000MXD 1909583392 Richard Myers, HAIB aa87c6f179244f41e9d8ad2629c1ebcb https://www.encodeproject.org/files/ENCFF000MWS/@@download/ENCFF000MWS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000MWT bigWig raw signal ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 1 18184290 Richard Myers, HAIB d8885d156304ed9145d23089f48303b9 https://www.encodeproject.org/files/ENCFF000MWT/@@download/ENCFF000MWT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000MWU bigWig raw signal ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 1 17087565 Richard Myers, HAIB 25821c3c4d51a44d8e8989f251a2a846 https://www.encodeproject.org/files/ENCFF000MWU/@@download/ENCFF000MWU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000MXC fastq reads ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1880626761 Richard Myers, HAIB 1dd8d2c1e84ee0ea458b6bb8c4f0f259 https://www.encodeproject.org/files/ENCFF000MXC/@@download/ENCFF000MXC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000MXD fastq reads ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1879228193 Richard Myers, HAIB bd2a0e44be0d2a2c68f7287a384915b5 https://www.encodeproject.org/files/ENCFF000MXD/@@download/ENCFF000MXD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001TRM bed broadPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 1 229177 Richard Myers, HAIB 45f9bfead1110a47336c763713859fd3 https://www.encodeproject.org/files/ENCFF001TRM/@@download/ENCFF001TRM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TRN bed broadPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 1 240437 Richard Myers, HAIB 196865102c9602729f763c5c4e7fcd78 https://www.encodeproject.org/files/ENCFF001TRN/@@download/ENCFF001TRN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CFH bed narrowPeak optimal idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 179680 ENCODE Consortium Analysis Working Group 438a33fdd8f029710327b3d6f6dbbce3 https://www.encodeproject.org/files/ENCFF002CFH/@@download/ENCFF002CFH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF029AVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFH 480324 ENCODE Consortium 83b6690b44e13d1da71b5bb4b5d4809f https://www.encodeproject.org/files/ENCFF029AVM/@@download/ENCFF029AVM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF319BCR bam unfiltered alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXC, ENCFF643CGH 2025035791 ENCODE Processing Pipeline f6cd4a616b3033d2e0f7873f8f8750d7 https://www.encodeproject.org/files/ENCFF319BCR/@@download/ENCFF319BCR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF017BBF bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXC, ENCFF643CGH 908847027 ENCODE Processing Pipeline c23de2cc86d37568e278ec7afdb990e8 https://www.encodeproject.org/files/ENCFF017BBF/@@download/ENCFF017BBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF711JRX bam unfiltered alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXD, ENCFF643CGH 2096363772 ENCODE Processing Pipeline 70f87fca56c3339bacb1b4951c10733d https://www.encodeproject.org/files/ENCFF711JRX/@@download/ENCFF711JRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF421BVL bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXD, ENCFF643CGH 1345029083 ENCODE Processing Pipeline 30b2e880440c83f4d9d17f10c085d9d8 https://www.encodeproject.org/files/ENCFF421BVL/@@download/ENCFF421BVL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF403RBH bam unfiltered alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXC, ENCFF807MUK 2019571337 ENCODE Processing Pipeline 05f8714d46abaafd138999253537da15 https://www.encodeproject.org/files/ENCFF403RBH/@@download/ENCFF403RBH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF788NMA bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXC, ENCFF807MUK 909112611 ENCODE Processing Pipeline 0b1c58d7c594b6d6dbddf3fcaaf1fb1d https://www.encodeproject.org/files/ENCFF788NMA/@@download/ENCFF788NMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF280CLV bam unfiltered alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXD, ENCFF807MUK 2089833943 ENCODE Processing Pipeline de26d3bae7ecefd587124cd882a8c660 https://www.encodeproject.org/files/ENCFF280CLV/@@download/ENCFF280CLV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF678LJA bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXD, ENCFF807MUK 1345084783 ENCODE Processing Pipeline 7badc1dae2189d419a9eb427967f357c https://www.encodeproject.org/files/ENCFF678LJA/@@download/ENCFF678LJA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF003SCT bigWig signal p-value ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF017BBF, ENCFF656HEF 524876711 ENCODE Processing Pipeline 176938567753aca017abf41c14f51156 https://www.encodeproject.org/files/ENCFF003SCT/@@download/ENCFF003SCT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF353CUO bigWig signal p-value ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421BVL, ENCFF656HEF 624915291 ENCODE Processing Pipeline d00a4779c05c0726d6b21bda9e1a3594 https://www.encodeproject.org/files/ENCFF353CUO/@@download/ENCFF353CUO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF088WBW bigWig signal p-value ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF017BBF, ENCFF421BVL, ENCFF656HEF 846616867 ENCODE Processing Pipeline 062631c4db23b59c22aafdb0bdf40787 https://www.encodeproject.org/files/ENCFF088WBW/@@download/ENCFF088WBW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF806FIS bigWig fold change over control ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF017BBF, ENCFF656HEF 471483795 ENCODE Processing Pipeline c0227fd4dcf64633eed5edb0d7e7d8f7 https://www.encodeproject.org/files/ENCFF806FIS/@@download/ENCFF806FIS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF995VXD bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421BVL, ENCFF656HEF 6715064 ENCODE Processing Pipeline c1c2ecd721929a26e209ba1b63948cf8 https://www.encodeproject.org/files/ENCFF995VXD/@@download/ENCFF995VXD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF450XFK bigWig fold change over control ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421BVL, ENCFF656HEF 662534056 ENCODE Processing Pipeline 9cd12a88f5e71a782faecf13ae86158f https://www.encodeproject.org/files/ENCFF450XFK/@@download/ENCFF450XFK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF501GGX bigBed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF815TAP 12702297 ENCODE Processing Pipeline 5cfe6bf7f6c00221ddab19aaf4c1cd4d https://www.encodeproject.org/files/ENCFF501GGX/@@download/ENCFF501GGX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF371RCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF093ZAB 474821 ENCODE Processing Pipeline e8aaca3e01a8787366106180926f81ad https://www.encodeproject.org/files/ENCFF371RCS/@@download/ENCFF371RCS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF517WBB bigWig fold change over control ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF017BBF, ENCFF421BVL, ENCFF656HEF 884235325 ENCODE Processing Pipeline d3dc4ee66d3dff2a35c6b7f35ea5ce73 https://www.encodeproject.org/files/ENCFF517WBB/@@download/ENCFF517WBB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF786YDD bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF017BBF, ENCFF656HEF 6335167 ENCODE Processing Pipeline a55acb44f9074673c848a3e2f74b000c https://www.encodeproject.org/files/ENCFF786YDD/@@download/ENCFF786YDD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF815TAP bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF017BBF, ENCFF421BVL, ENCFF656HEF 7047726 ENCODE Processing Pipeline c0dbb5081e65cb21c9c631ca146ffa7d https://www.encodeproject.org/files/ENCFF815TAP/@@download/ENCFF815TAP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF492KDZ bigBed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF786YDD 12793781 ENCODE Processing Pipeline 9fec8876265f9bac7f0ed99b52fb86b6 https://www.encodeproject.org/files/ENCFF492KDZ/@@download/ENCFF492KDZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF709IOM bigBed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF995VXD 12862332 ENCODE Processing Pipeline 04e5d84d9f39bed9dce3207200fdd572 https://www.encodeproject.org/files/ENCFF709IOM/@@download/ENCFF709IOM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF200RTY bed narrowPeak conservative idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF786YDD, ENCFF815TAP, ENCFF995VXD 165721 ENCODE Processing Pipeline 8777c0fa5f8ee1fe966d65343c58e352 https://www.encodeproject.org/files/ENCFF200RTY/@@download/ENCFF200RTY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF281OWN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF200RTY 395323 ENCODE Processing Pipeline 9c5551dbe4f3e028b2b739af141e54be https://www.encodeproject.org/files/ENCFF281OWN/@@download/ENCFF281OWN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF093ZAB bed narrowPeak optimal idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF786YDD, ENCFF815TAP, ENCFF995VXD 214919 ENCODE Processing Pipeline 7d6369343b30fcbc6eaf2c9182ce8b2d https://www.encodeproject.org/files/ENCFF093ZAB/@@download/ENCFF093ZAB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF406XRG bigWig signal p-value ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF788NMA, ENCFF864UEQ 545155322 ENCODE Processing Pipeline 5c76aec9fcc6cbb6b0eef57154096fd0 https://www.encodeproject.org/files/ENCFF406XRG/@@download/ENCFF406XRG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF324XZL bigWig fold change over control ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF788NMA, ENCFF864UEQ 458235376 ENCODE Processing Pipeline d3f2386a65a8d51ecaa7fb2157afea3d https://www.encodeproject.org/files/ENCFF324XZL/@@download/ENCFF324XZL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF223SYH bigWig signal p-value ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF678LJA, ENCFF864UEQ 681189786 ENCODE Processing Pipeline 003122314e4ef7a17745018cf740fc99 https://www.encodeproject.org/files/ENCFF223SYH/@@download/ENCFF223SYH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF036VOJ bigWig signal p-value ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF678LJA, ENCFF788NMA, ENCFF864UEQ 847412103 ENCODE Processing Pipeline 66497e444d66c8cbb4f65b5dcfcbccdf https://www.encodeproject.org/files/ENCFF036VOJ/@@download/ENCFF036VOJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF350JOB bigBed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF395ZTW 12866635 ENCODE Processing Pipeline fbfad289c33f7f42f657cfad51daeb7b https://www.encodeproject.org/files/ENCFF350JOB/@@download/ENCFF350JOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF887FHV bigWig fold change over control ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF678LJA, ENCFF864UEQ 644451106 ENCODE Processing Pipeline 6854e791a394674080c8ea837c5a989e https://www.encodeproject.org/files/ENCFF887FHV/@@download/ENCFF887FHV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF518ERS bigWig fold change over control ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF678LJA, ENCFF788NMA, ENCFF864UEQ 896416915 ENCODE Processing Pipeline 45dd5c0ee222b4b6f1bc8683826dbca6 https://www.encodeproject.org/files/ENCFF518ERS/@@download/ENCFF518ERS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF464UMR bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF788NMA, ENCFF864UEQ 6366838 ENCODE Processing Pipeline e2926302ad89a29921a7102fffba1dbb https://www.encodeproject.org/files/ENCFF464UMR/@@download/ENCFF464UMR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF325WAV bed narrowPeak optimal idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF395ZTW, ENCFF464UMR, ENCFF746BWA 232452 ENCODE Processing Pipeline 0842e3bc3cde1110bda1860a4a18a8fc https://www.encodeproject.org/files/ENCFF325WAV/@@download/ENCFF325WAV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF450XJQ bigBed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF464UMR 12826593 ENCODE Processing Pipeline ae631a16533233475eb90a8f681215f1 https://www.encodeproject.org/files/ENCFF450XJQ/@@download/ENCFF450XJQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF395ZTW bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF678LJA, ENCFF864UEQ 6719388 ENCODE Processing Pipeline 6df4ca160476c7e68c96fafea8f491de https://www.encodeproject.org/files/ENCFF395ZTW/@@download/ENCFF395ZTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF653IFC bigBed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF746BWA 12696676 ENCODE Processing Pipeline ce353a12c17d23fde19a1094138b42bf https://www.encodeproject.org/files/ENCFF653IFC/@@download/ENCFF653IFC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF746BWA bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF678LJA, ENCFF788NMA, ENCFF864UEQ 7055626 ENCODE Processing Pipeline 8188f949ae6f97c23b4cd38ee933eadc https://www.encodeproject.org/files/ENCFF746BWA/@@download/ENCFF746BWA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF892MGU bed narrowPeak conservative idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF395ZTW, ENCFF464UMR, ENCFF746BWA 164821 ENCODE Processing Pipeline 79f403f58d326e5390343fecaf36e6d1 https://www.encodeproject.org/files/ENCFF892MGU/@@download/ENCFF892MGU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF091YQS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF892MGU 392392 ENCODE Processing Pipeline 2fd882469f8a3c6d3196c0d31a773278 https://www.encodeproject.org/files/ENCFF091YQS/@@download/ENCFF091YQS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF772WAR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF325WAV 500950 ENCODE Processing Pipeline 527a89d75cdf70b433cfe32036f39695 https://www.encodeproject.org/files/ENCFF772WAR/@@download/ENCFF772WAR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001HLK bigBed broadPeak hotspots ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XQJ 3350519 John Stamatoyannopoulos, UW a7b420314db3519a667315816e057d98 https://www.encodeproject.org/files/ENCFF001HLK/@@download/ENCFF001HLK.bigBed hg19 archived control low read depth, low read length, low read depth ENCFF001HLL bigBed broadPeak hotspots ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XQK 3266762 John Stamatoyannopoulos, UW ebf7e32ab0815891e1424dd9a348b1cf https://www.encodeproject.org/files/ENCFF001HLL/@@download/ENCFF001HLL.bigBed hg19 archived control low read depth, low read length, low read depth ENCFF001HLM bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XQL 1094522 John Stamatoyannopoulos, UW 3b41e6c3ae230ec150ce37b87ccc0e30 https://www.encodeproject.org/files/ENCFF001HLM/@@download/ENCFF001HLM.bigBed hg19 archived control low read depth, low read length, low read depth ENCFF001HLN bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XQM 923237 John Stamatoyannopoulos, UW be9e95168799be31888eef8a44d1c4c8 https://www.encodeproject.org/files/ENCFF001HLN/@@download/ENCFF001HLN.bigBed hg19 archived control low read depth, low read length, low read depth ENCFF001HLO bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLW 545110517 John Stamatoyannopoulos, UW 1db9673682943a66f7d69ad546354307 https://www.encodeproject.org/files/ENCFF001HLO/@@download/ENCFF001HLO.bam hg19 archived control low read depth, low read length, low read depth ENCFF001HLP bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HLV 622866599 John Stamatoyannopoulos, UW 99d6ab21f0433e00f87820e600e05e6e https://www.encodeproject.org/files/ENCFF001HLP/@@download/ENCFF001HLP.bam hg19 archived control low read depth, low read length, low read depth ENCFF001HLQ bigWig raw signal ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HLP 128884537 John Stamatoyannopoulos, UW 3fd756ab22dfebdfd4c77318950785d4 https://www.encodeproject.org/files/ENCFF001HLQ/@@download/ENCFF001HLQ.bigWig hg19 archived control low read depth, low read length, low read depth ENCFF001HLS bigWig raw signal ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLO 122157875 John Stamatoyannopoulos, UW e485d4a3e29173af8f1d1824b989023c https://www.encodeproject.org/files/ENCFF001HLS/@@download/ENCFF001HLS.bigWig hg19 archived control low read depth, low read length, low read depth ENCFF001HLV fastq reads ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 685135047 John Stamatoyannopoulos, UW 343b85a73781a9b511e1d234b47eb3e2 https://www.encodeproject.org/files/ENCFF001HLV/@@download/ENCFF001HLV.fastq.gz Illumina Genome Analyzer /files/ENCFF001HME/ released control low read depth, low read length, low read depth ENCFF001HLW fastq reads ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 648104099 John Stamatoyannopoulos, UW 019065f4620573441a922aab75eaf2fe https://www.encodeproject.org/files/ENCFF001HLW/@@download/ENCFF001HLW.fastq.gz Illumina Genome Analyzer /files/ENCFF001HME/ released control low read depth, low read length, low read depth ENCFF001XQJ bed broadPeak hotspots ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HLP 2366306 John Stamatoyannopoulos, UW 89e7779cfa538ecc8d9fdafcbd47784b https://www.encodeproject.org/files/ENCFF001XQJ/@@download/ENCFF001XQJ.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF001XQK bed broadPeak hotspots ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLO 2241001 John Stamatoyannopoulos, UW f76ecdb679ca6134c0508b2085dfe7d7 https://www.encodeproject.org/files/ENCFF001XQK/@@download/ENCFF001XQK.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF001XQL bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HLP 772867 John Stamatoyannopoulos, UW faa325fa72bc1c6e7f185585149f625a https://www.encodeproject.org/files/ENCFF001XQL/@@download/ENCFF001XQL.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF001XQM bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLO 632186 John Stamatoyannopoulos, UW 2d732a8daebf71f3cd527787a2327939 https://www.encodeproject.org/files/ENCFF001XQM/@@download/ENCFF001XQM.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF002DCT bed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HLO, ENCFF001HLP 1029268 ENCODE Consortium Analysis Working Group ac9c4f461d11122b8f3cf90373558794 https://www.encodeproject.org/files/ENCFF002DCT/@@download/ENCFF002DCT.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF400NEZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DCT 2103434 ENCODE Consortium 4e5c7b22d803884153ec858a3f427242 https://www.encodeproject.org/files/ENCFF400NEZ/@@download/ENCFF400NEZ.bigBed hg19 archived control low read depth, low read length, low read depth ENCFF091ODJ bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HLV, ENCFF643CGH 565525660 ENCODE Processing Pipeline 0f4a3cf910ec555bd8dc6ada940f6b6e https://www.encodeproject.org/files/ENCFF091ODJ/@@download/ENCFF091ODJ.bam GRCh38 released control low read depth, low read length, low read depth ENCFF946VIO bam unfiltered alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HLV, ENCFF643CGH 802702641 ENCODE Processing Pipeline 584f2372070dd8ef68334068663eb917 https://www.encodeproject.org/files/ENCFF946VIO/@@download/ENCFF946VIO.bam GRCh38 released control low read depth, low read length, low read depth ENCFF665GAO bam unfiltered alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HLW, ENCFF643CGH 750737506 ENCODE Processing Pipeline ae19e8e001f08c24aca92702b8540567 https://www.encodeproject.org/files/ENCFF665GAO/@@download/ENCFF665GAO.bam GRCh38 released control low read depth, low read length, low read depth ENCFF648CAE bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HLW, ENCFF643CGH 490237216 ENCODE Processing Pipeline 077a3fd5542a0dcbb2b8dcb669fe1dad https://www.encodeproject.org/files/ENCFF648CAE/@@download/ENCFF648CAE.bam GRCh38 released control low read depth, low read length, low read depth ENCFF936DRB bam unfiltered alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HLW, ENCFF807MUK 748233543 ENCODE Processing Pipeline 182e8f0c0e432ffbb18697b090db7cfa https://www.encodeproject.org/files/ENCFF936DRB/@@download/ENCFF936DRB.bam hg19 released control low read depth, low read length, low read depth ENCFF322EWR bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HLW, ENCFF807MUK 490382008 ENCODE Processing Pipeline b2bbea6b258430aff8120737ada4ef9b https://www.encodeproject.org/files/ENCFF322EWR/@@download/ENCFF322EWR.bam hg19 released control low read depth, low read length, low read depth ENCFF289VTR bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HLV, ENCFF807MUK 565685711 ENCODE Processing Pipeline 28b960de867a06be8ca8ad57c82fbcfc https://www.encodeproject.org/files/ENCFF289VTR/@@download/ENCFF289VTR.bam hg19 released control low read depth, low read length, low read depth ENCFF546HFC bam unfiltered alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HLV, ENCFF807MUK 799902751 ENCODE Processing Pipeline 534248ff31f5fe5fbdc2ef0a65b72f21 https://www.encodeproject.org/files/ENCFF546HFC/@@download/ENCFF546HFC.bam hg19 released control low read depth, low read length, low read depth ENCFF435KGV bigWig signal p-value ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF052OHY, ENCFF289VTR 396983621 ENCODE Processing Pipeline 8bd8f5e64b91e2329420294dddf3d63e https://www.encodeproject.org/files/ENCFF435KGV/@@download/ENCFF435KGV.bigWig hg19 released control low read depth, low read length, low read depth ENCFF003SBJ bigWig signal p-value ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF052OHY, ENCFF322EWR 412196604 ENCODE Processing Pipeline 47cfe65e72dc2d34f5d93d0d01ea9e97 https://www.encodeproject.org/files/ENCFF003SBJ/@@download/ENCFF003SBJ.bigWig hg19 released control low read depth, low read length, low read depth ENCFF386YCI bigWig signal p-value ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF052OHY, ENCFF289VTR, ENCFF322EWR 472946927 ENCODE Processing Pipeline cee9511ede0581a29c77f0d63c87acb3 https://www.encodeproject.org/files/ENCFF386YCI/@@download/ENCFF386YCI.bigWig hg19 released control low read depth, low read length, low read depth ENCFF574UUB bigWig signal p-value ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF040CVQ, ENCFF091ODJ 388350483 ENCODE Processing Pipeline ae55e16fa069eaadeba5d3fc27253e56 https://www.encodeproject.org/files/ENCFF574UUB/@@download/ENCFF574UUB.bigWig GRCh38 released control low read depth, low read length, low read depth ENCFF299OUB bigWig signal p-value ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF040CVQ, ENCFF648CAE 351557302 ENCODE Processing Pipeline dbabe099fbd8a6a33d27ac2812620a72 https://www.encodeproject.org/files/ENCFF299OUB/@@download/ENCFF299OUB.bigWig GRCh38 released control low read depth, low read length, low read depth ENCFF221GXM bigWig fold change over control ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF040CVQ, ENCFF091ODJ 274261767 ENCODE Processing Pipeline a04e53ba1764c6d33cbe8a010d5dd816 https://www.encodeproject.org/files/ENCFF221GXM/@@download/ENCFF221GXM.bigWig GRCh38 released control low read depth, low read length, low read depth ENCFF592VAG bigWig fold change over control ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF052OHY, ENCFF289VTR 274917204 ENCODE Processing Pipeline 6981fc75234b1e35b310abf2eb593309 https://www.encodeproject.org/files/ENCFF592VAG/@@download/ENCFF592VAG.bigWig hg19 released control low read depth, low read length, low read depth ENCFF544OAB bigWig fold change over control ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF052OHY, ENCFF289VTR, ENCFF322EWR 459769878 ENCODE Processing Pipeline 5d261081dab321192e645d1718e3e8a2 https://www.encodeproject.org/files/ENCFF544OAB/@@download/ENCFF544OAB.bigWig hg19 released control low read depth, low read length, low read depth ENCFF004AFH bigWig fold change over control ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF052OHY, ENCFF322EWR 247200228 ENCODE Processing Pipeline 02f5bb810d275701d2970a54c53160a4 https://www.encodeproject.org/files/ENCFF004AFH/@@download/ENCFF004AFH.bigWig hg19 released control low read depth, low read length, low read depth ENCFF695IVZ bigWig signal p-value ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF040CVQ, ENCFF091ODJ, ENCFF648CAE 475459174 ENCODE Processing Pipeline 08e3c44174f6fe4610305d04d5fdc223 https://www.encodeproject.org/files/ENCFF695IVZ/@@download/ENCFF695IVZ.bigWig GRCh38 released control low read depth, low read length, low read depth ENCFF640TXZ bigWig fold change over control ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF040CVQ, ENCFF648CAE 245323622 ENCODE Processing Pipeline 90d74a42984bba42311f2a65aac8b866 https://www.encodeproject.org/files/ENCFF640TXZ/@@download/ENCFF640TXZ.bigWig GRCh38 released control low read depth, low read length, low read depth ENCFF620LDT bigWig fold change over control ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF040CVQ, ENCFF091ODJ, ENCFF648CAE 463530085 ENCODE Processing Pipeline ef6c998acb764b5f598ca48715c8dc45 https://www.encodeproject.org/files/ENCFF620LDT/@@download/ENCFF620LDT.bigWig GRCh38 released control low read depth, low read length, low read depth ENCFF988DJT bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF052OHY, ENCFF289VTR 4046478 ENCODE Processing Pipeline 841040790c05ee2cf51325df54a9716d https://www.encodeproject.org/files/ENCFF988DJT/@@download/ENCFF988DJT.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF213NTA bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF944AQH 10075076 ENCODE Processing Pipeline 5ba89ffba218acdf11c54c5bb76fbdf7 https://www.encodeproject.org/files/ENCFF213NTA/@@download/ENCFF213NTA.bigBed GRCh38 released control low read depth, low read length, low read depth ENCFF944AQH bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF040CVQ, ENCFF648CAE 4020175 ENCODE Processing Pipeline c96dc8eea9b757d5cae3d21a28fa7dca https://www.encodeproject.org/files/ENCFF944AQH/@@download/ENCFF944AQH.bed.gz GRCh38 released control low read depth, low read length, low read depth ENCFF876YXB bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF040CVQ, ENCFF091ODJ, ENCFF648CAE 4546295 ENCODE Processing Pipeline ded847c822ff7c6864c5688daec90ac3 https://www.encodeproject.org/files/ENCFF876YXB/@@download/ENCFF876YXB.bed.gz GRCh38 released control low read depth, low read length, low read depth ENCFF562WIV bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF040CVQ, ENCFF091ODJ 4047805 ENCODE Processing Pipeline 267f403d145584009bf62408238541f1 https://www.encodeproject.org/files/ENCFF562WIV/@@download/ENCFF562WIV.bed.gz GRCh38 released control low read depth, low read length, low read depth ENCFF655DUF bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF052OHY, ENCFF322EWR 4031483 ENCODE Processing Pipeline 30d8f79a3f78539e4dad8986a315e5c9 https://www.encodeproject.org/files/ENCFF655DUF/@@download/ENCFF655DUF.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF498JUY bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF052OHY, ENCFF289VTR, ENCFF322EWR 4555950 ENCODE Processing Pipeline 71c416cbbf2a5f52bcc1994130c58e78 https://www.encodeproject.org/files/ENCFF498JUY/@@download/ENCFF498JUY.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF844ELV bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF562WIV 10091718 ENCODE Processing Pipeline 09a1f4cb6a6d35ad466cdccc02f88d69 https://www.encodeproject.org/files/ENCFF844ELV/@@download/ENCFF844ELV.bigBed GRCh38 released control low read depth, low read length, low read depth ENCFF529WSV bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF988DJT 10078419 ENCODE Processing Pipeline a956ef117a8e9a6bb45664e925a294f9 https://www.encodeproject.org/files/ENCFF529WSV/@@download/ENCFF529WSV.bigBed hg19 released control low read depth, low read length, low read depth ENCFF206FTW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF171SNH 1398043 ENCODE Processing Pipeline 4576668fac4ff60398c3c1f41def420f https://www.encodeproject.org/files/ENCFF206FTW/@@download/ENCFF206FTW.bigBed GRCh38 released control low read depth, low read length, low read depth ENCFF685KLH bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF876YXB 11135424 ENCODE Processing Pipeline 0f933d482dc17219dbdd09691ae26476 https://www.encodeproject.org/files/ENCFF685KLH/@@download/ENCFF685KLH.bigBed GRCh38 released control low read depth, low read length, low read depth ENCFF896XWO bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF655DUF 10089874 ENCODE Processing Pipeline 80c68e75fb1c7a2ba826e493fc94b446 https://www.encodeproject.org/files/ENCFF896XWO/@@download/ENCFF896XWO.bigBed hg19 released control low read depth, low read length, low read depth ENCFF850PKJ bed narrowPeak conservative idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF562WIV, ENCFF876YXB, ENCFF944AQH 772741 ENCODE Processing Pipeline 1d4b95f2d38eefc52d274a5c1115bc57 https://www.encodeproject.org/files/ENCFF850PKJ/@@download/ENCFF850PKJ.bed.gz GRCh38 released control low read depth, low read length, low read depth ENCFF171SNH bed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF562WIV, ENCFF876YXB, ENCFF944AQH 812792 ENCODE Processing Pipeline 7c30b0282011df4c684ff487beab76bc https://www.encodeproject.org/files/ENCFF171SNH/@@download/ENCFF171SNH.bed.gz GRCh38 released control low read depth, low read length, low read depth ENCFF340EDA bed narrowPeak conservative idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF498JUY, ENCFF655DUF, ENCFF988DJT 770606 ENCODE Processing Pipeline 997d517b720ea367ed6fbaab5860bc7e https://www.encodeproject.org/files/ENCFF340EDA/@@download/ENCFF340EDA.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF157MLE bigBed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF498JUY 11141068 ENCODE Processing Pipeline 401ca6ca8cfd0775884f12ac762530a3 https://www.encodeproject.org/files/ENCFF157MLE/@@download/ENCFF157MLE.bigBed hg19 released control low read depth, low read length, low read depth ENCFF836HRB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF850PKJ 1344660 ENCODE Processing Pipeline c97756ece069b6aaa00cde09252f8f8f https://www.encodeproject.org/files/ENCFF836HRB/@@download/ENCFF836HRB.bigBed GRCh38 released control low read depth, low read length, low read depth ENCFF347SQO bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF340EDA 1341776 ENCODE Processing Pipeline 68885666b87bd39cf2c80d8cc4f96a9a https://www.encodeproject.org/files/ENCFF347SQO/@@download/ENCFF347SQO.bigBed hg19 released control low read depth, low read length, low read depth ENCFF683MIU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF364QXM 1401349 ENCODE Processing Pipeline e6dd942cfd327f0da628436f3ab046f4 https://www.encodeproject.org/files/ENCFF683MIU/@@download/ENCFF683MIU.bigBed hg19 released control low read depth, low read length, low read depth ENCFF364QXM bed narrowPeak optimal idr thresholded peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF498JUY, ENCFF655DUF, ENCFF988DJT 813755 ENCODE Processing Pipeline 28ab0b38761553ef323901ac055b31f4 https://www.encodeproject.org/files/ENCFF364QXM/@@download/ENCFF364QXM.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF000PDV bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PEH 869869124 Richard Myers, HAIB 39b1e17e6b7a365bb0166eaf0ea68062 https://www.encodeproject.org/files/ENCFF000PDV/@@download/ENCFF000PDV.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PDW bigBed broadPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UEW 385747 Richard Myers, HAIB 98e68dfb5934f288e79d1e48818dd7f7 https://www.encodeproject.org/files/ENCFF000PDW/@@download/ENCFF000PDW.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PDX bigBed broadPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UEX 501845 Richard Myers, HAIB ee7a8b05600bfac90974787416d52325 https://www.encodeproject.org/files/ENCFF000PDX/@@download/ENCFF000PDX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PDY bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PEK 1085526317 Richard Myers, HAIB d74f4dfa7d343dd5dd98c07808f06aae https://www.encodeproject.org/files/ENCFF000PDY/@@download/ENCFF000PDY.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000PEA bigWig raw signal ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 16207126 Richard Myers, HAIB 787dfc7f5a2caadefa557a46f5301773 https://www.encodeproject.org/files/ENCFF000PEA/@@download/ENCFF000PEA.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PEB bigWig raw signal ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 20606944 Richard Myers, HAIB 25f7b6550f4191fcbc4e97b19f8490f2 https://www.encodeproject.org/files/ENCFF000PEB/@@download/ENCFF000PEB.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000PEH fastq reads ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1207751162 Richard Myers, HAIB b76c02d1c76f4eee52abe97d1b3b66e9 https://www.encodeproject.org/files/ENCFF000PEH/@@download/ENCFF000PEH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, low read depth biological replicates with identical biosample ENCFF000PEK fastq reads ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1443531151 Richard Myers, HAIB 1be65b38fad871a260b1113090929b47 https://www.encodeproject.org/files/ENCFF000PEK/@@download/ENCFF000PEK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PFD/ released low read length, low read depth biological replicates with identical biosample ENCFF001UEW bed broadPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 196426 Richard Myers, HAIB 38b7bfc66155801d3fffcdd68e670908 https://www.encodeproject.org/files/ENCFF001UEW/@@download/ENCFF001UEW.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UEX bed broadPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 223891 Richard Myers, HAIB 4a8b8384db63b60a4e1e42deaf2f5a2f https://www.encodeproject.org/files/ENCFF001UEX/@@download/ENCFF001UEX.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJX bed narrowPeak optimal idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 154682 ENCODE Consortium Analysis Working Group 9fdb5aba41ec5ae9b95ad2a0c5edd14a https://www.encodeproject.org/files/ENCFF002CJX/@@download/ENCFF002CJX.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF860HAF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJX 357019 ENCODE Consortium 0d8c05b6337d8d32c24aa877e6315ecc https://www.encodeproject.org/files/ENCFF860HAF/@@download/ENCFF860HAF.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF724YFZ bam unfiltered alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEH, ENCFF643CGH 1468133613 ENCODE Processing Pipeline 2bbc42e45c60008292ebe560f5339479 https://www.encodeproject.org/files/ENCFF724YFZ/@@download/ENCFF724YFZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF429GKZ bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEH, ENCFF643CGH 607674321 ENCODE Processing Pipeline 7d2562bb1d080813f4a515b67bc53bbf https://www.encodeproject.org/files/ENCFF429GKZ/@@download/ENCFF429GKZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF121LQQ bam unfiltered alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEK, ENCFF643CGH 1763827670 ENCODE Processing Pipeline fe5801be17410554bbbd2d028bf634a1 https://www.encodeproject.org/files/ENCFF121LQQ/@@download/ENCFF121LQQ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF139VJW bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEK, ENCFF643CGH 755921385 ENCODE Processing Pipeline 167ffb7e11717982d001c00dfc60c082 https://www.encodeproject.org/files/ENCFF139VJW/@@download/ENCFF139VJW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF157XCQ bam unfiltered alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEH, ENCFF807MUK 1463367060 ENCODE Processing Pipeline befe40dd5057509e33618d90a4e0bbce https://www.encodeproject.org/files/ENCFF157XCQ/@@download/ENCFF157XCQ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF820GCU bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEH, ENCFF807MUK 607997635 ENCODE Processing Pipeline 60a6816f1a74ee1a677900ea201ef4fa https://www.encodeproject.org/files/ENCFF820GCU/@@download/ENCFF820GCU.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF762XXI bam unfiltered alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEK, ENCFF807MUK 1757948220 ENCODE Processing Pipeline 283f8a0de855522504cdd4042002b8b9 https://www.encodeproject.org/files/ENCFF762XXI/@@download/ENCFF762XXI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF813EGR bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEK, ENCFF807MUK 756237218 ENCODE Processing Pipeline 2212e368d7d1a2cb27f4fd52b62ee6e5 https://www.encodeproject.org/files/ENCFF813EGR/@@download/ENCFF813EGR.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF616GTR bigWig signal p-value ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF429GKZ 379088320 ENCODE Processing Pipeline 2870c4bb7fd422cdd5d853fe53cb6b86 https://www.encodeproject.org/files/ENCFF616GTR/@@download/ENCFF616GTR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF321UFH bigWig signal p-value ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF139VJW, ENCFF202PGY 480123957 ENCODE Processing Pipeline 7edfedb6922ccc027709e5f8ea79de00 https://www.encodeproject.org/files/ENCFF321UFH/@@download/ENCFF321UFH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF247LKR bigWig signal p-value ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF139VJW, ENCFF202PGY, ENCFF429GKZ 534572725 ENCODE Processing Pipeline fb6cd128a25adeea919dc5eb54f48e43 https://www.encodeproject.org/files/ENCFF247LKR/@@download/ENCFF247LKR.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF781KRS bigWig fold change over control ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF139VJW, ENCFF202PGY 325055892 ENCODE Processing Pipeline 58ee81ae4fb6507050008a599ad4832f https://www.encodeproject.org/files/ENCFF781KRS/@@download/ENCFF781KRS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF779IFO bigWig fold change over control ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF429GKZ 241959409 ENCODE Processing Pipeline 767793f64ec84aabe6fbc11ed218922f https://www.encodeproject.org/files/ENCFF779IFO/@@download/ENCFF779IFO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF937PQQ bigWig fold change over control ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF139VJW, ENCFF202PGY, ENCFF429GKZ 489983701 ENCODE Processing Pipeline dfc73c79f2fa025bedae2c10cf91dd96 https://www.encodeproject.org/files/ENCFF937PQQ/@@download/ENCFF937PQQ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF617YZF bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF139VJW, ENCFF202PGY, ENCFF429GKZ 4742586 ENCODE Processing Pipeline 915d5b01d971d44d178de0d638a3a71c https://www.encodeproject.org/files/ENCFF617YZF/@@download/ENCFF617YZF.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF041DNK bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF202PGY, ENCFF429GKZ 3894809 ENCODE Processing Pipeline 5e7679e46f4683d937ced55a53f67398 https://www.encodeproject.org/files/ENCFF041DNK/@@download/ENCFF041DNK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF936TMP bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF139VJW, ENCFF202PGY 4469359 ENCODE Processing Pipeline 530d1fa6a35bc4b4ff7512e3af240f4c https://www.encodeproject.org/files/ENCFF936TMP/@@download/ENCFF936TMP.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF447OAX bigBed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF041DNK 8354432 ENCODE Processing Pipeline 9de7ee8ee78c818ef8305af6736fc193 https://www.encodeproject.org/files/ENCFF447OAX/@@download/ENCFF447OAX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF971HKQ bigBed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF617YZF 10967442 ENCODE Processing Pipeline ea774f4ae55f7652ac1074e85b158d85 https://www.encodeproject.org/files/ENCFF971HKQ/@@download/ENCFF971HKQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF725KIO bigBed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF936TMP 10789102 ENCODE Processing Pipeline 0a3c36e5319dd54e5762794ab94f0857 https://www.encodeproject.org/files/ENCFF725KIO/@@download/ENCFF725KIO.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF587GWD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF091UDB 270880 ENCODE Processing Pipeline b8ef86c792f7e62ad3496c25d5a4efb5 https://www.encodeproject.org/files/ENCFF587GWD/@@download/ENCFF587GWD.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF868ZRM bed narrowPeak conservative idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041DNK, ENCFF419RSJ, ENCFF617YZF, ENCFF936TMP 124407 ENCODE Processing Pipeline d73c6b98f33f1dfe9b2e64017f777c5f https://www.encodeproject.org/files/ENCFF868ZRM/@@download/ENCFF868ZRM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF229RUS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF868ZRM 258627 ENCODE Processing Pipeline 5a79c24cab4d1d023f65683f32162fdd https://www.encodeproject.org/files/ENCFF229RUS/@@download/ENCFF229RUS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF091UDB bed narrowPeak optimal idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041DNK, ENCFF419RSJ, ENCFF617YZF, ENCFF936TMP 133613 ENCODE Processing Pipeline ab91602f7e72dff5e98912bb758cf5f1 https://www.encodeproject.org/files/ENCFF091UDB/@@download/ENCFF091UDB.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF043NAS bigWig fold change over control ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF820GCU 241974498 ENCODE Processing Pipeline 0f78970a97fe8a2827bc6d024a2f6657 https://www.encodeproject.org/files/ENCFF043NAS/@@download/ENCFF043NAS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF358ONH bigWig signal p-value ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF820GCU 371248150 ENCODE Processing Pipeline 0679f78aac53da227668ceda9cab41ea https://www.encodeproject.org/files/ENCFF358ONH/@@download/ENCFF358ONH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF047ULJ bigWig signal p-value ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF813EGR 432982752 ENCODE Processing Pipeline 0cbcb1514efd553edb4aabbb39e71a84 https://www.encodeproject.org/files/ENCFF047ULJ/@@download/ENCFF047ULJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF975ZCL bigWig signal p-value ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF813EGR, ENCFF820GCU 534822071 ENCODE Processing Pipeline 1593ce6c31f8234adbb4d0f61bb28780 https://www.encodeproject.org/files/ENCFF975ZCL/@@download/ENCFF975ZCL.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF122WHW bigWig fold change over control ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF813EGR 325063207 ENCODE Processing Pipeline cbe471df9bee77b513714c575ade8464 https://www.encodeproject.org/files/ENCFF122WHW/@@download/ENCFF122WHW.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF195MDL bigBed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF985GJY 8343174 ENCODE Processing Pipeline 44c777ea08d22d9efeb8f732e3dca79d https://www.encodeproject.org/files/ENCFF195MDL/@@download/ENCFF195MDL.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF889TCJ bigWig fold change over control ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF813EGR, ENCFF820GCU 488222926 ENCODE Processing Pipeline bd12c518328f1acee8b7a2db4fba2c35 https://www.encodeproject.org/files/ENCFF889TCJ/@@download/ENCFF889TCJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF588CWW bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF813EGR 4475853 ENCODE Processing Pipeline 11c95e53f2c6842553d23a69793e3f64 https://www.encodeproject.org/files/ENCFF588CWW/@@download/ENCFF588CWW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF428HJN bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044MEQ, ENCFF813EGR, ENCFF820GCU 4744689 ENCODE Processing Pipeline 56e8db6db29ac6149c22d3b65194c2db https://www.encodeproject.org/files/ENCFF428HJN/@@download/ENCFF428HJN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF985GJY bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF820GCU 3898821 ENCODE Processing Pipeline 160a39955ee9d582777a912c33db6628 https://www.encodeproject.org/files/ENCFF985GJY/@@download/ENCFF985GJY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF888MOF bigBed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF588CWW 10789626 ENCODE Processing Pipeline 59c498aa0b6abe3b3af661a84b05991c https://www.encodeproject.org/files/ENCFF888MOF/@@download/ENCFF888MOF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF074VYY bigBed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF428HJN 10962450 ENCODE Processing Pipeline c9ae7a49d0a8a533e96d9e23481e74f6 https://www.encodeproject.org/files/ENCFF074VYY/@@download/ENCFF074VYY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF816FRW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF574EIX 258570 ENCODE Processing Pipeline 6b5ec6b5207e486ce518f7d3bf87a487 https://www.encodeproject.org/files/ENCFF816FRW/@@download/ENCFF816FRW.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF369GFR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF793BVO 271389 ENCODE Processing Pipeline 716b523e69ed7e007000ece5b7222a3b https://www.encodeproject.org/files/ENCFF369GFR/@@download/ENCFF369GFR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF793BVO bed narrowPeak optimal idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF428HJN, ENCFF588CWW, ENCFF985GJY 134074 ENCODE Processing Pipeline 3b852f9fa019239b89ab2631c48a10a8 https://www.encodeproject.org/files/ENCFF793BVO/@@download/ENCFF793BVO.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF574EIX bed narrowPeak conservative idr thresholded peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF428HJN, ENCFF588CWW, ENCFF985GJY 124453 ENCODE Processing Pipeline 392263d64c8b7ae7317e141cba61dcdc https://www.encodeproject.org/files/ENCFF574EIX/@@download/ENCFF574EIX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000XAD fastq reads ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 931093448 Kevin Struhl, HMS 0d17d7f1db9aed6027d4c5793fe489a7 https://www.encodeproject.org/files/ENCFF000XAD/@@download/ENCFF000XAD.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAE fastq reads ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 1004759755 Kevin Struhl, HMS 46c672fc8a3202b02f3bec93d7473164 https://www.encodeproject.org/files/ENCFF000XAE/@@download/ENCFF000XAE.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAF bigBed narrowPeak peaks ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHU 117993 Kevin Struhl, HMS d456e82b58f536876ed393de98125506 https://www.encodeproject.org/files/ENCFF000XAF/@@download/ENCFF000XAF.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAG bigWig signal ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 448020561 Kevin Struhl, HMS 5beb54ad8bc673dcda0eb04737af700d https://www.encodeproject.org/files/ENCFF000XAG/@@download/ENCFF000XAG.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XAK bam alignments ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAD 1171686427 Kevin Struhl, HMS 14ead4631bd73df717b3bdca7aca4879 https://www.encodeproject.org/files/ENCFF000XAK/@@download/ENCFF000XAK.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAL bam alignments ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAE 1269788046 Kevin Struhl, HMS 677e5de1d07f62fb29e97c2b4f96b9c4 https://www.encodeproject.org/files/ENCFF000XAL/@@download/ENCFF000XAL.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VHU bed narrowPeak peaks ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 13432 Kevin Struhl, HMS da8625f81a7cbf84ad37a25c9a2d2163 https://www.encodeproject.org/files/ENCFF001VHU/@@download/ENCFF001VHU.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CRV bed narrowPeak optimal idr thresholded peaks ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 13232 ENCODE Consortium Analysis Working Group fe274615f1addff9d92690272a00fbc4 https://www.encodeproject.org/files/ENCFF002CRV/@@download/ENCFF002CRV.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF367QZY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRV 115719 ENCODE Consortium f21a966b70cc8f7127e40b4a31c8c4b9 https://www.encodeproject.org/files/ENCFF367QZY/@@download/ENCFF367QZY.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000PRN bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PSA 1041789117 Richard Myers, HAIB f8436fb20d3e88928b1e080c9194244a https://www.encodeproject.org/files/ENCFF000PRN/@@download/ENCFF000PRN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PRO bigBed broadPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHY 607782 Richard Myers, HAIB fa46ca8bb9c94ff0561ebbbcd633ffc7 https://www.encodeproject.org/files/ENCFF000PRO/@@download/ENCFF000PRO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PRP bigBed broadPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHZ 984623 Richard Myers, HAIB 47f8244d220999ebaa77cc01ad7bd7a9 https://www.encodeproject.org/files/ENCFF000PRP/@@download/ENCFF000PRP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PRR bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PSH 1465001918 Richard Myers, HAIB b3b7793ca90ea27fb1e393394c101f60 https://www.encodeproject.org/files/ENCFF000PRR/@@download/ENCFF000PRR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PRS bigWig raw signal ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 13627076 Richard Myers, HAIB c1a99375d8ea4d4b42d6fe3d4601e600 https://www.encodeproject.org/files/ENCFF000PRS/@@download/ENCFF000PRS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000PRT bigWig raw signal ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 59404635 Richard Myers, HAIB 884cb558dc2a2987c0d2a3eb666f57ce https://www.encodeproject.org/files/ENCFF000PRT/@@download/ENCFF000PRT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000PSA fastq reads ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1615513199 Richard Myers, HAIB 9a40f3eedbbfe35b39b8e68de0885499 https://www.encodeproject.org/files/ENCFF000PSA/@@download/ENCFF000PSA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PSH fastq reads ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2076369288 Richard Myers, HAIB 512cb159153af83dd17a9f6d9d330050 https://www.encodeproject.org/files/ENCFF000PSH/@@download/ENCFF000PSH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POH/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001UHY bed broadPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 319152 Richard Myers, HAIB cc7985356581dbaa9b69a955d5c72c1b https://www.encodeproject.org/files/ENCFF001UHY/@@download/ENCFF001UHY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF001UHZ bed broadPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 621872 Richard Myers, HAIB 6e353961de2ae63e7c7ccc39a8e423b6 https://www.encodeproject.org/files/ENCFF001UHZ/@@download/ENCFF001UHZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CLH bed narrowPeak optimal idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 472354 ENCODE Consortium Analysis Working Group 4f5fc00411508310c161a6b2e77695e1 https://www.encodeproject.org/files/ENCFF002CLH/@@download/ENCFF002CLH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF533STT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLH 1084238 ENCODE Consortium b631c2843be23d904d6b7fc0d446f6b6 https://www.encodeproject.org/files/ENCFF533STT/@@download/ENCFF533STT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF582CJF bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSA, ENCFF643CGH 637033775 ENCODE Processing Pipeline 6cc90749c353d7f1acb6057538d21dd0 https://www.encodeproject.org/files/ENCFF582CJF/@@download/ENCFF582CJF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF985USW bam unfiltered alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSA, ENCFF643CGH 1911908952 ENCODE Processing Pipeline 01adbe85dad7457f9b8ba23f8eb1e81e https://www.encodeproject.org/files/ENCFF985USW/@@download/ENCFF985USW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF270TGL bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSH, ENCFF643CGH 999909157 ENCODE Processing Pipeline cb69288d1a08efbb52fb3cd6ac030688 https://www.encodeproject.org/files/ENCFF270TGL/@@download/ENCFF270TGL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF298ULD bam unfiltered alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSH, ENCFF643CGH 2467662683 ENCODE Processing Pipeline 52dee8f83311c9368a0aeb0dc78ddc6f https://www.encodeproject.org/files/ENCFF298ULD/@@download/ENCFF298ULD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF958DBW bam unfiltered alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSA, ENCFF807MUK 1905259467 ENCODE Processing Pipeline 1aaed7164683b32e77db1c1b38b66628 https://www.encodeproject.org/files/ENCFF958DBW/@@download/ENCFF958DBW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF523DNB bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSA, ENCFF807MUK 637421868 ENCODE Processing Pipeline 2ba89bbb1d33a379d3215ce447b0e3f2 https://www.encodeproject.org/files/ENCFF523DNB/@@download/ENCFF523DNB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF592BVT bam unfiltered alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSH, ENCFF807MUK 2460260248 ENCODE Processing Pipeline e1346e72f0f2214f50e36183fc65ce3c https://www.encodeproject.org/files/ENCFF592BVT/@@download/ENCFF592BVT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF871ASR bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSH, ENCFF807MUK 1000467222 ENCODE Processing Pipeline ea9c79fe7a767ae317f4c8d10472980b https://www.encodeproject.org/files/ENCFF871ASR/@@download/ENCFF871ASR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF463GXU bigWig fold change over control ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB 322399026 ENCODE Processing Pipeline f61b4840e74c191ddc9582f40112f097 https://www.encodeproject.org/files/ENCFF463GXU/@@download/ENCFF463GXU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF287PVJ bigWig signal p-value ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF871ASR 527440712 ENCODE Processing Pipeline 1d24677da536c4f2e025a50b138ebae9 https://www.encodeproject.org/files/ENCFF287PVJ/@@download/ENCFF287PVJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF316GUJ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB 4140152 ENCODE Processing Pipeline 61ce2d1eaafd5cd80daec838734efe7b https://www.encodeproject.org/files/ENCFF316GUJ/@@download/ENCFF316GUJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF308DEQ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF871ASR 5107914 ENCODE Processing Pipeline 49a9703abf533e94633ee660cd406419 https://www.encodeproject.org/files/ENCFF308DEQ/@@download/ENCFF308DEQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF817BLC bigBed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF308DEQ 11196773 ENCODE Processing Pipeline 2b417e0e6ca8e2e035717e48da3f186e https://www.encodeproject.org/files/ENCFF817BLC/@@download/ENCFF817BLC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF684BLN bed narrowPeak optimal idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF308DEQ, ENCFF316GUJ, ENCFF805TIZ 400681 ENCODE Processing Pipeline 3899b7d76e13cf4087901a7fac9fddb1 https://www.encodeproject.org/files/ENCFF684BLN/@@download/ENCFF684BLN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF313QVT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF684BLN 783862 ENCODE Processing Pipeline c43918ea7042f6431c97accef9f94835 https://www.encodeproject.org/files/ENCFF313QVT/@@download/ENCFF313QVT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF424NZM bigWig fold change over control ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF871ASR 467116802 ENCODE Processing Pipeline ff6ff26c38de3ee9560dafe15cd37642 https://www.encodeproject.org/files/ENCFF424NZM/@@download/ENCFF424NZM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF253PSX bigWig signal p-value ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF193YIO, ENCFF582CJF, ENCFF943DZB 502346219 ENCODE Processing Pipeline a92b2bd2fe7d217a676cfd68d6958694 https://www.encodeproject.org/files/ENCFF253PSX/@@download/ENCFF253PSX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF169BHA bigWig signal p-value ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF270TGL, ENCFF943DZB 599210640 ENCODE Processing Pipeline c1b811aa698cb0766303b8f03b503e15 https://www.encodeproject.org/files/ENCFF169BHA/@@download/ENCFF169BHA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF586WRZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF914IFQ 777398 ENCODE Processing Pipeline b1f5d9b811abc235528e3ba104c4a2a3 https://www.encodeproject.org/files/ENCFF586WRZ/@@download/ENCFF586WRZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF697UHP bigWig signal p-value ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB 534602242 ENCODE Processing Pipeline be83b0560212d678d048501425d52930 https://www.encodeproject.org/files/ENCFF697UHP/@@download/ENCFF697UHP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF023XNI bigWig signal p-value ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB, ENCFF871ASR 613222944 ENCODE Processing Pipeline e28fae5017881771f8cefc7eb7d947c4 https://www.encodeproject.org/files/ENCFF023XNI/@@download/ENCFF023XNI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF462BPN bigWig fold change over control ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB, ENCFF871ASR 667859208 ENCODE Processing Pipeline c14b44ee6ea23f1c529e479bf86f12a1 https://www.encodeproject.org/files/ENCFF462BPN/@@download/ENCFF462BPN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF805TIZ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB, ENCFF871ASR 5374404 ENCODE Processing Pipeline 6089dde32b4bedf175c22fa3f08d9aae https://www.encodeproject.org/files/ENCFF805TIZ/@@download/ENCFF805TIZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF962DEO bed narrowPeak conservative idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF308DEQ, ENCFF316GUJ, ENCFF805TIZ 316813 ENCODE Processing Pipeline e9c1d0bbabca6e4ae1108c4d7221e3b8 https://www.encodeproject.org/files/ENCFF962DEO/@@download/ENCFF962DEO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF704AGF bigBed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF316GUJ 8729141 ENCODE Processing Pipeline 433212b588cfd87add1fc9ec706b6cc4 https://www.encodeproject.org/files/ENCFF704AGF/@@download/ENCFF704AGF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF171RTW bigBed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF805TIZ 11532088 ENCODE Processing Pipeline e4ddb239bf0a1fad021d11f41af7aeaf https://www.encodeproject.org/files/ENCFF171RTW/@@download/ENCFF171RTW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF842SEA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF962DEO 662988 ENCODE Processing Pipeline b7c745859bf972ae07c6952cf270693f https://www.encodeproject.org/files/ENCFF842SEA/@@download/ENCFF842SEA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF609GMC bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF193YIO, ENCFF582CJF, ENCFF943DZB 4134608 ENCODE Processing Pipeline 4ee596125ffccbc75e59de3232ba6f90 https://www.encodeproject.org/files/ENCFF609GMC/@@download/ENCFF609GMC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF770HZA bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF270TGL, ENCFF943DZB 5104473 ENCODE Processing Pipeline cb48efd63aae2f930e554483b1899f20 https://www.encodeproject.org/files/ENCFF770HZA/@@download/ENCFF770HZA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF924RJY bigWig fold change over control ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF193YIO, ENCFF270TGL, ENCFF582CJF, ENCFF943DZB 667266738 ENCODE Processing Pipeline b5477c3ed61c94b7993d414a34fc3335 https://www.encodeproject.org/files/ENCFF924RJY/@@download/ENCFF924RJY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF089NTQ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF193YIO, ENCFF270TGL, ENCFF582CJF, ENCFF943DZB 5373153 ENCODE Processing Pipeline b460aeb92d91a31448ab3cf7f5960f99 https://www.encodeproject.org/files/ENCFF089NTQ/@@download/ENCFF089NTQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF176UJQ bigBed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF770HZA 11196045 ENCODE Processing Pipeline 8c7361aa7c3248d337bdb3103b404630 https://www.encodeproject.org/files/ENCFF176UJQ/@@download/ENCFF176UJQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF895AOF bed narrowPeak conservative idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089NTQ, ENCFF419RSJ, ENCFF609GMC, ENCFF770HZA 316541 ENCODE Processing Pipeline 63cdd381b0e7843d8b8211630af1be29 https://www.encodeproject.org/files/ENCFF895AOF/@@download/ENCFF895AOF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF873NAK bigWig fold change over control ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF193YIO, ENCFF582CJF, ENCFF943DZB 321238685 ENCODE Processing Pipeline 6160bb3882c676651328f009067047b3 https://www.encodeproject.org/files/ENCFF873NAK/@@download/ENCFF873NAK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF530LZD bigWig signal p-value ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF193YIO, ENCFF270TGL, ENCFF582CJF, ENCFF943DZB 611798547 ENCODE Processing Pipeline 4fe994a1e207b06fd536b467b43ce4e4 https://www.encodeproject.org/files/ENCFF530LZD/@@download/ENCFF530LZD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF065RRR bigWig fold change over control ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193YIO, ENCFF270TGL, ENCFF943DZB 466918968 ENCODE Processing Pipeline 97c4e082118865b308e08df2839fd46d https://www.encodeproject.org/files/ENCFF065RRR/@@download/ENCFF065RRR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF021GCG bigBed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF609GMC 8725530 ENCODE Processing Pipeline 667a5138ac8cf285cf36e6f78ceea21d https://www.encodeproject.org/files/ENCFF021GCG/@@download/ENCFF021GCG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF633YRX bigBed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089NTQ 11533049 ENCODE Processing Pipeline e7881182e5fecab74d15f20b8d6dbf43 https://www.encodeproject.org/files/ENCFF633YRX/@@download/ENCFF633YRX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF498RHX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF895AOF 663504 ENCODE Processing Pipeline 7e3f3d6ed064cd06ec41da21a8b1a804 https://www.encodeproject.org/files/ENCFF498RHX/@@download/ENCFF498RHX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF914IFQ bed narrowPeak optimal idr thresholded peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089NTQ, ENCFF419RSJ, ENCFF609GMC, ENCFF770HZA 395864 ENCODE Processing Pipeline 17a74daeb420617d9eecadc51715cc37 https://www.encodeproject.org/files/ENCFF914IFQ/@@download/ENCFF914IFQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000YJP bam alignments ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YKL 382820814 Sherman Weissman, Yale 14478d823fb0aa5ca708dcc0d31403da https://www.encodeproject.org/files/ENCFF000YJP/@@download/ENCFF000YJP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YJQ bam alignments ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YKM 341009148 Sherman Weissman, Yale 63ab7f517bf6817a12b43040f22339ff https://www.encodeproject.org/files/ENCFF000YJQ/@@download/ENCFF000YJQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YJR bigBed narrowPeak peaks ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMP 403587 Sherman Weissman, Yale 7cf5c3d543e56e0dd47382b0e075af95 https://www.encodeproject.org/files/ENCFF000YJR/@@download/ENCFF000YJR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YJS bigWig signal ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 330571171 Sherman Weissman, Yale 4f0b095b33642d8b36899c01af600784 https://www.encodeproject.org/files/ENCFF000YJS/@@download/ENCFF000YJS.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YKL fastq reads ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 308210329 Sherman Weissman, Yale a3a7b2296e7f8be7496fa5fbb49db9d7 https://www.encodeproject.org/files/ENCFF000YKL/@@download/ENCFF000YKL.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YKM fastq reads ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 280654290 Sherman Weissman, Yale bd19566d51743e4fb662704d518ceba2 https://www.encodeproject.org/files/ENCFF000YKM/@@download/ENCFF000YKM.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VMP bed narrowPeak peaks ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 146616 Sherman Weissman, Yale 7ed01cd027c0414c49da3f4df1c41fe1 https://www.encodeproject.org/files/ENCFF001VMP/@@download/ENCFF001VMP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CWC bed narrowPeak optimal idr thresholded peaks ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 192247 ENCODE Consortium Analysis Working Group abdba0bac5cb6444fefa32850edddc63 https://www.encodeproject.org/files/ENCFF002CWC/@@download/ENCFF002CWC.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF508TQH bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWC 424510 ENCODE Consortium cebda9e132f4bec058903cf270e52d0d https://www.encodeproject.org/files/ENCFF508TQH/@@download/ENCFF508TQH.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF432PVW fastq reads ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 1 50 single-ended 985298493 Richard Myers, HAIB df12188ddfac61c326f356387724c8c8 SRA:SRR6212604 https://www.encodeproject.org/files/ENCFF432PVW/@@download/ENCFF432PVW.fastq.gz Illumina HiSeq 2000 /files/ENCFF158AFC/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF360HUQ fastq reads ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 1 50 single-ended 854410046 Richard Myers, HAIB d8faeacdbf011c2c9bcce28e5bee11e7 SRA:SRR6212603 https://www.encodeproject.org/files/ENCFF360HUQ/@@download/ENCFF360HUQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF805GCU/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF209IUI bigWig signal p-value ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF224HMM, ENCFF991UTU 480034429 ENCODE Processing Pipeline 314ca8cf49a5100d48ef077a5a3f7abd https://www.encodeproject.org/files/ENCFF209IUI/@@download/ENCFF209IUI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF971KQC bigWig fold change over control ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF224HMM, ENCFF991UTU 442438929 ENCODE Processing Pipeline f18db663fc252cc758ed4574634ec8d5 https://www.encodeproject.org/files/ENCFF971KQC/@@download/ENCFF971KQC.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF302NXP bigWig signal p-value ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF460ORU 455651925 ENCODE Processing Pipeline 63c785cf9c5e2727b367044983d66d16 https://www.encodeproject.org/files/ENCFF302NXP/@@download/ENCFF302NXP.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF175FEQ bigWig fold change over control ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF460ORU 342627517 ENCODE Processing Pipeline 4a896182202f8f86bf1f532d33c0add7 https://www.encodeproject.org/files/ENCFF175FEQ/@@download/ENCFF175FEQ.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF858DYE bam unfiltered alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF360HUQ, ENCFF643CGH 943381458 ENCODE Processing Pipeline 2a6d12a0157f0e2251e67e85da7f3fd4 https://www.encodeproject.org/files/ENCFF858DYE/@@download/ENCFF858DYE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF002ZVX bam unfiltered alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF432PVW, ENCFF643CGH 1041670235 ENCODE Processing Pipeline ec4954982998de94ed0644bfa12831a1 https://www.encodeproject.org/files/ENCFF002ZVX/@@download/ENCFF002ZVX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF943YXO bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF360HUQ, ENCFF643CGH 708919716 ENCODE Processing Pipeline 83e6ad79a1a1af8612ce88c028ad39e1 https://www.encodeproject.org/files/ENCFF943YXO/@@download/ENCFF943YXO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF648XID bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF432PVW, ENCFF643CGH 593224117 ENCODE Processing Pipeline 15efca832fefc2dfc37a0f8c26dcb7f9 https://www.encodeproject.org/files/ENCFF648XID/@@download/ENCFF648XID.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF144DIV bigWig signal p-value ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF648XID, ENCFF985NSN 431647391 ENCODE Processing Pipeline 2298fcd7ad25cd5b82c81cddf765b43e https://www.encodeproject.org/files/ENCFF144DIV/@@download/ENCFF144DIV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF839VZH bigWig signal p-value ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF943YXO 522566264 ENCODE Processing Pipeline 7ce63da7c2ba9f25e58077b1229a37bc https://www.encodeproject.org/files/ENCFF839VZH/@@download/ENCFF839VZH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF112DHJ bigWig signal p-value ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF648XID, ENCFF943YXO, ENCFF985NSN 844893968 ENCODE Processing Pipeline 6455521db913d421c8236f08999185a4 https://www.encodeproject.org/files/ENCFF112DHJ/@@download/ENCFF112DHJ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF915RRJ bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF648XID, ENCFF985NSN 4958113 ENCODE Processing Pipeline 9e35f7b045abc266ab7027c36f699436 https://www.encodeproject.org/files/ENCFF915RRJ/@@download/ENCFF915RRJ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF299LHP bigBed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF915RRJ 10998699 ENCODE Processing Pipeline 186f586c35de46ff4edd998e46be5ccc https://www.encodeproject.org/files/ENCFF299LHP/@@download/ENCFF299LHP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF974JGA bigBed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF028HOI 11178037 ENCODE Processing Pipeline f21c6d462846cc4ffb47e8bb8752d620 https://www.encodeproject.org/files/ENCFF974JGA/@@download/ENCFF974JGA.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF754HCO bigBed narrowPeak conservative idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF940TMU 581569 ENCODE Processing Pipeline c67bc59d5cd81cbb88b30b2de9326c08 https://www.encodeproject.org/files/ENCFF754HCO/@@download/ENCFF754HCO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF245GPL bigWig fold change over control ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF943YXO 442115315 ENCODE Processing Pipeline 127f1e3f618a6a11c19a9286f7f9d4f2 https://www.encodeproject.org/files/ENCFF245GPL/@@download/ENCFF245GPL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF841CBQ bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF648XID, ENCFF943YXO, ENCFF985NSN 5968653 ENCODE Processing Pipeline 6ab883c3c7d37c8752b8b43b036a5b8e https://www.encodeproject.org/files/ENCFF841CBQ/@@download/ENCFF841CBQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF425XJN bigWig fold change over control ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF648XID, ENCFF985NSN 344872962 ENCODE Processing Pipeline cc0755754cae93ed8b66d4c9e5458323 https://www.encodeproject.org/files/ENCFF425XJN/@@download/ENCFF425XJN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF028HOI bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF370PSF, ENCFF943YXO 5047575 ENCODE Processing Pipeline e5399ba0ae6f08b2f0944d765eb90700 https://www.encodeproject.org/files/ENCFF028HOI/@@download/ENCFF028HOI.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF940TMU bed narrowPeak conservative idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF028HOI, ENCFF419RSJ, ENCFF841CBQ, ENCFF915RRJ 280910 ENCODE Processing Pipeline fa04a930780846c9b1f133edffaa240c https://www.encodeproject.org/files/ENCFF940TMU/@@download/ENCFF940TMU.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF293LRQ bed narrowPeak optimal idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF028HOI, ENCFF419RSJ, ENCFF841CBQ, ENCFF915RRJ 475503 ENCODE Processing Pipeline 0a0a6a47a0178cd34b4ac8bbcf369981 https://www.encodeproject.org/files/ENCFF293LRQ/@@download/ENCFF293LRQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF574PCV bigWig fold change over control ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF370PSF, ENCFF648XID, ENCFF943YXO, ENCFF985NSN 878627666 ENCODE Processing Pipeline 7ca9b82d34e8da4591f92f93be752f69 https://www.encodeproject.org/files/ENCFF574PCV/@@download/ENCFF574PCV.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF873JJO bigBed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF841CBQ 11590466 ENCODE Processing Pipeline a515d040e2cf21734f2e6e79fc6044be https://www.encodeproject.org/files/ENCFF873JJO/@@download/ENCFF873JJO.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF930NJB bigBed narrowPeak optimal idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF293LRQ 846407 ENCODE Processing Pipeline 431229b8e18daa5d82599695be2ea36f https://www.encodeproject.org/files/ENCFF930NJB/@@download/ENCFF930NJB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF743FOK bam unfiltered alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF360HUQ, ENCFF807MUK 938913513 ENCODE Processing Pipeline ca3145e6e25d38f7c35753692a007494 https://www.encodeproject.org/files/ENCFF743FOK/@@download/ENCFF743FOK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF224HMM bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF360HUQ, ENCFF807MUK 708853611 ENCODE Processing Pipeline 4092f6f4e2c6f9d225d1d268b90a0897 https://www.encodeproject.org/files/ENCFF224HMM/@@download/ENCFF224HMM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF460ORU bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF432PVW, ENCFF807MUK 593265961 ENCODE Processing Pipeline ccff9e3b168897e603a029ac5ed1aae1 https://www.encodeproject.org/files/ENCFF460ORU/@@download/ENCFF460ORU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF067HKM bam unfiltered alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF432PVW, ENCFF807MUK 1037254382 ENCODE Processing Pipeline cea4ac048cce57980311227229e1f838 https://www.encodeproject.org/files/ENCFF067HKM/@@download/ENCFF067HKM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF216JDJ bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF224HMM, ENCFF359TIO, ENCFF460ORU, ENCFF991UTU 5969434 ENCODE Processing Pipeline 0e5a643529c92c22ffd909fb5a08a7ec https://www.encodeproject.org/files/ENCFF216JDJ/@@download/ENCFF216JDJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF822WGO bigBed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF539QIT 11121069 ENCODE Processing Pipeline 21934f1514a9b0a08923c7e3ed59cd46 https://www.encodeproject.org/files/ENCFF822WGO/@@download/ENCFF822WGO.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF539QIT bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF224HMM, ENCFF991UTU 5006850 ENCODE Processing Pipeline 3000419cc1a9289e4a24a47454b3aee7 https://www.encodeproject.org/files/ENCFF539QIT/@@download/ENCFF539QIT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF076ZDI bigBed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF216JDJ 11584304 ENCODE Processing Pipeline 83d0107ac7f8e632f9032da4751c9301 https://www.encodeproject.org/files/ENCFF076ZDI/@@download/ENCFF076ZDI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF344EDE bed narrowPeak optimal idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF216JDJ, ENCFF539QIT, ENCFF555YAB 474546 ENCODE Processing Pipeline d3e6b822f6c76b83e10faeeac4e38d0c https://www.encodeproject.org/files/ENCFF344EDE/@@download/ENCFF344EDE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF740DCD bigBed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF555YAB 11000712 ENCODE Processing Pipeline db72b8af732cc047764a557746d101e8 https://www.encodeproject.org/files/ENCFF740DCD/@@download/ENCFF740DCD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF295GBJ bed narrowPeak conservative idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF001TDO, ENCFF216JDJ, ENCFF539QIT, ENCFF555YAB 280581 ENCODE Processing Pipeline bd3828d3a0086fe72bf09ae8f81cfb36 https://www.encodeproject.org/files/ENCFF295GBJ/@@download/ENCFF295GBJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF378LRA bigWig signal p-value ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF224HMM, ENCFF359TIO, ENCFF460ORU, ENCFF991UTU 900995961 ENCODE Processing Pipeline 9e1b93a8e2c3dd594cbc1868ef8bda4e https://www.encodeproject.org/files/ENCFF378LRA/@@download/ENCFF378LRA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF555YAB bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF460ORU 4994489 ENCODE Processing Pipeline c37fc9bf8e4fcbe2205e5a2f3a31c539 https://www.encodeproject.org/files/ENCFF555YAB/@@download/ENCFF555YAB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF746XYY bigBed narrowPeak conservative idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF295GBJ 581252 ENCODE Processing Pipeline 00c0db051cd82839ae458535f1a761f2 https://www.encodeproject.org/files/ENCFF746XYY/@@download/ENCFF746XYY.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF811LJC bigBed narrowPeak optimal idr thresholded peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF344EDE 844192 ENCODE Processing Pipeline 0655d7d178b7e7f78e3605237a007175 https://www.encodeproject.org/files/ENCFF811LJC/@@download/ENCFF811LJC.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF965MSA bigWig fold change over control ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1, 2 ENCFF224HMM, ENCFF359TIO, ENCFF460ORU, ENCFF991UTU 887486318 ENCODE Processing Pipeline 9ee1ee3e6740109cb45a29ab80e14978 https://www.encodeproject.org/files/ENCFF965MSA/@@download/ENCFF965MSA.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF000XBT bam alignments ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBV 258343969 Michael Snyder, Stanford 2b2c436a1c26f578416ce1e8fe81a374 https://www.encodeproject.org/files/ENCFF000XBT/@@download/ENCFF000XBT.bam hg19 released low read length biological replicates with identical biosample ENCFF000XBU bigBed narrowPeak peaks ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIB 1859601 Michael Snyder, Stanford 2cc5fa87637b8723578b2280e52c19b5 https://www.encodeproject.org/files/ENCFF000XBU/@@download/ENCFF000XBU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XBV fastq reads ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 474607094 Michael Snyder, Stanford b0ff9915eee0d9a6ecb22102034ca5c1 https://www.encodeproject.org/files/ENCFF000XBV/@@download/ENCFF000XBV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XBW bam alignments ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBY 403985587 Michael Snyder, Stanford 41d1074cab97f8c1bdb3a3a9958aa948 https://www.encodeproject.org/files/ENCFF000XBW/@@download/ENCFF000XBW.bam hg19 released low read length biological replicates with identical biosample ENCFF000XBY fastq reads ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 762172271 Michael Snyder, Stanford da2fbf0b4a92f7a15c5955a61f366e11 https://www.encodeproject.org/files/ENCFF000XBY/@@download/ENCFF000XBY.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XCA bigWig signal ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 288287020 Michael Snyder, Stanford 80d62d940d24451291c91370d4f3dce4 https://www.encodeproject.org/files/ENCFF000XCA/@@download/ENCFF000XCA.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001VIB bed narrowPeak peaks ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 742153 Michael Snyder, Stanford 1e8d108005b3c802ca42cc25648fb28e https://www.encodeproject.org/files/ENCFF001VIB/@@download/ENCFF001VIB.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CSC bed narrowPeak optimal idr thresholded peaks ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 509760 ENCODE Consortium Analysis Working Group 74a3d8795885876e1e4b953d6b54fe98 https://www.encodeproject.org/files/ENCFF002CSC/@@download/ENCFF002CSC.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF816PJX bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSC 1337690 ENCODE Consortium bdf762d1905286587417d7bdb4ecacce https://www.encodeproject.org/files/ENCFF816PJX/@@download/ENCFF816PJX.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000OGB bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OGQ 792319278 Richard Myers, HAIB 67e9808b399532c01630db145a565521 https://www.encodeproject.org/files/ENCFF000OGB/@@download/ENCFF000OGB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OGD bigBed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZI 822061 Richard Myers, HAIB d3d860935cfa9f8ed7b6b28e5f615353 https://www.encodeproject.org/files/ENCFF000OGD/@@download/ENCFF000OGD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OGE bigBed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZJ 635602 Richard Myers, HAIB 575cb826cade0e811f676ac8865d9de5 https://www.encodeproject.org/files/ENCFF000OGE/@@download/ENCFF000OGE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OGF bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OGN 820790488 Richard Myers, HAIB 1b6def9e8e72152e8350406f9314ac2b https://www.encodeproject.org/files/ENCFF000OGF/@@download/ENCFF000OGF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OGG bigWig raw signal ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 30194563 Richard Myers, HAIB 01ede430aac7c1e7f969ecdb4e83e63b https://www.encodeproject.org/files/ENCFF000OGG/@@download/ENCFF000OGG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OGI bigWig raw signal ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 19316080 Richard Myers, HAIB 282960b8cac6321a40183e53ac4a57c9 https://www.encodeproject.org/files/ENCFF000OGI/@@download/ENCFF000OGI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OGN fastq reads ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 828504672 Richard Myers, HAIB 4ec5c632100728caab7e175b16631bbf https://www.encodeproject.org/files/ENCFF000OGN/@@download/ENCFF000OGN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OGQ fastq reads ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1032108981 Richard Myers, HAIB a27bb1ed7df4356debf9ecf49032117c https://www.encodeproject.org/files/ENCFF000OGQ/@@download/ENCFF000OGQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001TZI bed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 1 540658 Richard Myers, HAIB ba4995bf149ee17acb834557bc569e36 https://www.encodeproject.org/files/ENCFF001TZI/@@download/ENCFF001TZI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TZJ bed broadPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 1 375898 Richard Myers, HAIB f1181b77b5074e3124fc989d4287f0cf https://www.encodeproject.org/files/ENCFF001TZJ/@@download/ENCFF001TZJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CHZ bed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 395086 ENCODE Consortium Analysis Working Group 872fa752845c6d02b3cb1d6ca221bf1f https://www.encodeproject.org/files/ENCFF002CHZ/@@download/ENCFF002CHZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF709EWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHZ 874998 ENCODE Consortium 8116c50b3b0b87ab4bd9d8ec2b15d90a https://www.encodeproject.org/files/ENCFF709EWV/@@download/ENCFF709EWV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF136IUN bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF643CGH 1264329142 ENCODE Processing Pipeline 4d8a2285a7ee4e8b3579ddd8047cf722 https://www.encodeproject.org/files/ENCFF136IUN/@@download/ENCFF136IUN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF101LKK bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF643CGH 532824893 ENCODE Processing Pipeline 74b843c4f46349b000a06dd94edc8cfb https://www.encodeproject.org/files/ENCFF101LKK/@@download/ENCFF101LKK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF291PCM bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF643CGH 650554870 ENCODE Processing Pipeline 9381f9d76c2b11ead61f24eab4aab760 https://www.encodeproject.org/files/ENCFF291PCM/@@download/ENCFF291PCM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF713RPY bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF643CGH 1072184432 ENCODE Processing Pipeline b5f1615e2e8782d9f6dead86530ca24f https://www.encodeproject.org/files/ENCFF713RPY/@@download/ENCFF713RPY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF208RHL bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF807MUK 532468255 ENCODE Processing Pipeline 065b8e34bfdb60de3d20275dbd23fa91 https://www.encodeproject.org/files/ENCFF208RHL/@@download/ENCFF208RHL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF874QHT bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF807MUK 1261345062 ENCODE Processing Pipeline a403f3e32a56a4e13677b243c32f1849 https://www.encodeproject.org/files/ENCFF874QHT/@@download/ENCFF874QHT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF766QXX bam unfiltered alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF807MUK 1069286831 ENCODE Processing Pipeline 5f2cab5088738e98f2548898dcc07724 https://www.encodeproject.org/files/ENCFF766QXX/@@download/ENCFF766QXX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF404XBY bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF807MUK 645855411 ENCODE Processing Pipeline 07d739cd1033e6c6ed6602cb95f7d507 https://www.encodeproject.org/files/ENCFF404XBY/@@download/ENCFF404XBY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF064KJG bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101LKK, ENCFF562HPN 511887188 ENCODE Processing Pipeline 176dc53c53de7fdfed7bd67888728c50 https://www.encodeproject.org/files/ENCFF064KJG/@@download/ENCFF064KJG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF529XRP bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF291PCM, ENCFF438FFV 418579808 ENCODE Processing Pipeline 9d86f961ad7bd0f93695ec6337572510 https://www.encodeproject.org/files/ENCFF529XRP/@@download/ENCFF529XRP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF150DMC bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101LKK, ENCFF562HPN 236373892 ENCODE Processing Pipeline ebb8d7cd25bad8f43093798b0da2b148 https://www.encodeproject.org/files/ENCFF150DMC/@@download/ENCFF150DMC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF990QOO bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101LKK, ENCFF291PCM, ENCFF438FFV, ENCFF562HPN 741465876 ENCODE Processing Pipeline dd7067538897be10485fe1bcf80d739f https://www.encodeproject.org/files/ENCFF990QOO/@@download/ENCFF990QOO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF126FJP bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF291PCM, ENCFF438FFV 267111452 ENCODE Processing Pipeline c7515aa5be910a7e925a8f462c2236cc https://www.encodeproject.org/files/ENCFF126FJP/@@download/ENCFF126FJP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF481DWO bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101LKK, ENCFF291PCM, ENCFF438FFV, ENCFF562HPN 595686172 ENCODE Processing Pipeline 14131580c86854f071e4feb435b5550a https://www.encodeproject.org/files/ENCFF481DWO/@@download/ENCFF481DWO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF812GBT bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101LKK, ENCFF562HPN 4506878 ENCODE Processing Pipeline 4549e771a064f914cea14014408e184d https://www.encodeproject.org/files/ENCFF812GBT/@@download/ENCFF812GBT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF875ULM bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF291PCM, ENCFF438FFV 4572538 ENCODE Processing Pipeline fe487be9d37d9680a1b3693d96f7ab0c https://www.encodeproject.org/files/ENCFF875ULM/@@download/ENCFF875ULM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF503SNB bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101LKK, ENCFF291PCM, ENCFF438FFV, ENCFF562HPN 5734784 ENCODE Processing Pipeline 2badee84cdd69119a51572cfefd82bae https://www.encodeproject.org/files/ENCFF503SNB/@@download/ENCFF503SNB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF755SOA bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF503SNB 13496827 ENCODE Processing Pipeline b8ab8ce6c8d4d67349ca04c1b1551fa0 https://www.encodeproject.org/files/ENCFF755SOA/@@download/ENCFF755SOA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF176ILA bed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF503SNB, ENCFF812GBT, ENCFF875ULM 389410 ENCODE Processing Pipeline f7630a6310961c25cd50f5a644fbdab8 https://www.encodeproject.org/files/ENCFF176ILA/@@download/ENCFF176ILA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF210DFF bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF812GBT 10242221 ENCODE Processing Pipeline fbfa9b947a1b8fd3e34c5c0272490863 https://www.encodeproject.org/files/ENCFF210DFF/@@download/ENCFF210DFF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF068NGM bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF875ULM 10619825 ENCODE Processing Pipeline b90a14d0af554f78e4ef742dc4e8c696 https://www.encodeproject.org/files/ENCFF068NGM/@@download/ENCFF068NGM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF768VSH bed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF503SNB, ENCFF812GBT, ENCFF875ULM 457695 ENCODE Processing Pipeline 9edaafcabc15b0befeed308e57dffb37 https://www.encodeproject.org/files/ENCFF768VSH/@@download/ENCFF768VSH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF855GNR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF176ILA 711529 ENCODE Processing Pipeline 75ae222188decdf5c50a1356e4c70908 https://www.encodeproject.org/files/ENCFF855GNR/@@download/ENCFF855GNR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF525ZKB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF768VSH 969626 ENCODE Processing Pipeline dd9f21376104ce049407b079d62b9185 https://www.encodeproject.org/files/ENCFF525ZKB/@@download/ENCFF525ZKB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF005LNQ bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 494051492 ENCODE Processing Pipeline 60f51a47a046491607032ba71ad88e7a https://www.encodeproject.org/files/ENCFF005LNQ/@@download/ENCFF005LNQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF149JBH bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 239167715 ENCODE Processing Pipeline a84f06244f52303968bbe92c16765123 https://www.encodeproject.org/files/ENCFF149JBH/@@download/ENCFF149JBH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF418ONJ bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 398680765 ENCODE Processing Pipeline 32fc112ee7de73ed9e20e9e4fde21067 https://www.encodeproject.org/files/ENCFF418ONJ/@@download/ENCFF418ONJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF849WCS bigWig signal p-value ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208RHL, ENCFF404XBY, ENCFF837IOW, ENCFF958RTR 769635948 ENCODE Processing Pipeline 9100b61a7237b5ac7a8cd99681b16cc5 https://www.encodeproject.org/files/ENCFF849WCS/@@download/ENCFF849WCS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF914XAX bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 273299419 ENCODE Processing Pipeline bd1a2068ec1180d8e81c2ec5499a0689 https://www.encodeproject.org/files/ENCFF914XAX/@@download/ENCFF914XAX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF527WDJ bigWig fold change over control ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208RHL, ENCFF404XBY, ENCFF837IOW, ENCFF958RTR 586538392 ENCODE Processing Pipeline 9c0258e701e37d6e73e848f3c479bb4e https://www.encodeproject.org/files/ENCFF527WDJ/@@download/ENCFF527WDJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF814CGS bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 4455185 ENCODE Processing Pipeline 782d288d4ded497bdcde03c923300814 https://www.encodeproject.org/files/ENCFF814CGS/@@download/ENCFF814CGS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF571QYV bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF208RHL, ENCFF404XBY, ENCFF837IOW, ENCFF958RTR 5635233 ENCODE Processing Pipeline b307ab7f0b2db42886bc79c0db2fbec3 https://www.encodeproject.org/files/ENCFF571QYV/@@download/ENCFF571QYV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF636VGY bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF734EMB 10610770 ENCODE Processing Pipeline 8cdef93b5a37faac4721462bbb155302 https://www.encodeproject.org/files/ENCFF636VGY/@@download/ENCFF636VGY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF009MGH bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF571QYV 11285140 ENCODE Processing Pipeline a4df1ccf3816eb6f21c9196a16a2e376 https://www.encodeproject.org/files/ENCFF009MGH/@@download/ENCFF009MGH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF734EMB bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 4570713 ENCODE Processing Pipeline dcf37d805f0491b7b886ff1113be27a8 https://www.encodeproject.org/files/ENCFF734EMB/@@download/ENCFF734EMB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF741OWY bigBed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF814CGS 10154101 ENCODE Processing Pipeline f63aabc68d0a473f8a032fa4c0b6bf29 https://www.encodeproject.org/files/ENCFF741OWY/@@download/ENCFF741OWY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF759PVA bed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF571QYV, ENCFF734EMB, ENCFF814CGS 357053 ENCODE Processing Pipeline b0b344ab04a7ab4a1a59472d2924da61 https://www.encodeproject.org/files/ENCFF759PVA/@@download/ENCFF759PVA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF373OTM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF759PVA 671089 ENCODE Processing Pipeline f5357d48664fff0c7cc1d31c19b0cb44 https://www.encodeproject.org/files/ENCFF373OTM/@@download/ENCFF373OTM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF098HEH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF160WLU 780035 ENCODE Processing Pipeline ab1f87b23fb45c4e9cb4d8d48727f809 https://www.encodeproject.org/files/ENCFF098HEH/@@download/ENCFF098HEH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF160WLU bed narrowPeak optimal idr thresholded peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF571QYV, ENCFF734EMB, ENCFF814CGS 441776 ENCODE Processing Pipeline 1de50ea947fc32b20c14525ecf1087ac https://www.encodeproject.org/files/ENCFF160WLU/@@download/ENCFF160WLU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RHH bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RIH 855665243 Richard Myers, HAIB c6327d5c0e273fdbe7037ed3988d3580 https://www.encodeproject.org/files/ENCFF000RHH/@@download/ENCFF000RHH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHI bigBed broadPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001URF 298491 Richard Myers, HAIB a2fa9b4d440fbadc4d676551c32242ed https://www.encodeproject.org/files/ENCFF000RHI/@@download/ENCFF000RHI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHJ bigBed broadPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001URG 182168 Richard Myers, HAIB 5da09a7534a6a4d6455d50fb3a4553a9 https://www.encodeproject.org/files/ENCFF000RHJ/@@download/ENCFF000RHJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RHK bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RIK 1787233861 Richard Myers, HAIB c845a310feb7ba6d91dfdcb3b263b68e https://www.encodeproject.org/files/ENCFF000RHK/@@download/ENCFF000RHK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RIB bigWig raw signal ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 31586940 Richard Myers, HAIB 5c67772907bf7009a6b81b1f2228da8c https://www.encodeproject.org/files/ENCFF000RIB/@@download/ENCFF000RIB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000RIC bigWig raw signal ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 8332784 Richard Myers, HAIB f5f6c73522db538faa302a3e235a1f53 https://www.encodeproject.org/files/ENCFF000RIC/@@download/ENCFF000RIC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000RIH fastq reads ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 779966779 Richard Myers, HAIB c5b8aff60484c3c321dca41085233ab9 https://www.encodeproject.org/files/ENCFF000RIH/@@download/ENCFF000RIH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RHV/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RIK fastq reads ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1219829813 Richard Myers, HAIB 9632fbcfca330fe5103b7f191d3626ff https://www.encodeproject.org/files/ENCFF000RIK/@@download/ENCFF000RIK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RHW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF001URF bed broadPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 125749 Richard Myers, HAIB 144b982b38669554d835ab13eebbf0d7 https://www.encodeproject.org/files/ENCFF001URF/@@download/ENCFF001URF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001URG bed broadPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 83593 Richard Myers, HAIB f87256e1ed97f598a0084ee86d1d13ac https://www.encodeproject.org/files/ENCFF001URG/@@download/ENCFF001URG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CNV bed narrowPeak optimal idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 272385 ENCODE Consortium Analysis Working Group 12dc7014881286d87e8c2f3746e29e6d https://www.encodeproject.org/files/ENCFF002CNV/@@download/ENCFF002CNV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF842LFY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNV 737110 ENCODE Consortium 37c20709955ff798a4045d406a13157c https://www.encodeproject.org/files/ENCFF842LFY/@@download/ENCFF842LFY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF886WCM bam unfiltered alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIH, ENCFF643CGH 1079800583 ENCODE Processing Pipeline 6748d3d800d71ea1b1c6e2850debe283 https://www.encodeproject.org/files/ENCFF886WCM/@@download/ENCFF886WCM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF740NIN bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIH, ENCFF643CGH 589768443 ENCODE Processing Pipeline c1b374588893ad0f6bb82588257594a0 https://www.encodeproject.org/files/ENCFF740NIN/@@download/ENCFF740NIN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF446TBL bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIK, ENCFF643CGH 859969070 ENCODE Processing Pipeline 246b675d37e5f6194d45531e41027e4d https://www.encodeproject.org/files/ENCFF446TBL/@@download/ENCFF446TBL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF856GMW bam unfiltered alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIK, ENCFF643CGH 1587073489 ENCODE Processing Pipeline f0b3e1b3bdc0383fd95c70eca1152e82 https://www.encodeproject.org/files/ENCFF856GMW/@@download/ENCFF856GMW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF781IEE bam unfiltered alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIK, ENCFF807MUK 1578408367 ENCODE Processing Pipeline 08acd8610ad5db432e96b58bd98e6796 https://www.encodeproject.org/files/ENCFF781IEE/@@download/ENCFF781IEE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF718DYD bam unfiltered alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIH, ENCFF807MUK 1071891377 ENCODE Processing Pipeline 2368ae7c1e3dc3eaa5139220ac81d24a https://www.encodeproject.org/files/ENCFF718DYD/@@download/ENCFF718DYD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF154TCG bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIH, ENCFF807MUK 590045503 ENCODE Processing Pipeline 6e87028ba46303f4950df8358a43c2b9 https://www.encodeproject.org/files/ENCFF154TCG/@@download/ENCFF154TCG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF191RAG bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIK, ENCFF807MUK 860305916 ENCODE Processing Pipeline 9f8edb12e0d7594294955db058799275 https://www.encodeproject.org/files/ENCFF191RAG/@@download/ENCFF191RAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF928GES bigWig signal p-value ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406KPS, ENCFF414YAT, ENCFF446TBL 423933523 ENCODE Processing Pipeline 649fb26162cf373ff310bcfc26144836 https://www.encodeproject.org/files/ENCFF928GES/@@download/ENCFF928GES.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF266JJK bigWig signal p-value ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414YAT, ENCFF740NIN 280142696 ENCODE Processing Pipeline ddb7474d7c08a5410a6fe997dca00859 https://www.encodeproject.org/files/ENCFF266JJK/@@download/ENCFF266JJK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF614JWC bigWig signal p-value ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406KPS, ENCFF414YAT, ENCFF446TBL, ENCFF740NIN 547294401 ENCODE Processing Pipeline ae3a7f12e87d9993d2296e245ad66e29 https://www.encodeproject.org/files/ENCFF614JWC/@@download/ENCFF614JWC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF409OWI bigWig fold change over control ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406KPS, ENCFF414YAT, ENCFF446TBL 415294863 ENCODE Processing Pipeline 1fd01bbb97161567cdd5a5e2d15c3549 https://www.encodeproject.org/files/ENCFF409OWI/@@download/ENCFF409OWI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF721MSH bigWig fold change over control ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414YAT, ENCFF740NIN 280229909 ENCODE Processing Pipeline d59930e31123b227908ccec92c5c3944 https://www.encodeproject.org/files/ENCFF721MSH/@@download/ENCFF721MSH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF468WTB bigWig fold change over control ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406KPS, ENCFF414YAT, ENCFF446TBL, ENCFF740NIN 663571023 ENCODE Processing Pipeline 9836132d39be3ce3876c58cd25ea2f2e https://www.encodeproject.org/files/ENCFF468WTB/@@download/ENCFF468WTB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF442SQT bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406KPS, ENCFF414YAT, ENCFF446TBL 4610853 ENCODE Processing Pipeline 4d09a0782db1519343fd0c1c54146743 https://www.encodeproject.org/files/ENCFF442SQT/@@download/ENCFF442SQT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF818PZY bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF414YAT, ENCFF740NIN 402862 ENCODE Processing Pipeline d5932f6f21606569ce97855ec6f90a58 https://www.encodeproject.org/files/ENCFF818PZY/@@download/ENCFF818PZY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF140FCK bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF406KPS, ENCFF414YAT, ENCFF446TBL, ENCFF740NIN 5213123 ENCODE Processing Pipeline dfeff5e6944fa388d4bd46eea6d920ad https://www.encodeproject.org/files/ENCFF140FCK/@@download/ENCFF140FCK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF970VQE bigBed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF442SQT 10899769 ENCODE Processing Pipeline 821772f720c893a9995f1a68154e446c https://www.encodeproject.org/files/ENCFF970VQE/@@download/ENCFF970VQE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF390HYW bigBed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF818PZY 1012496 ENCODE Processing Pipeline 65afd9ee6c334ff03210d12455935517 https://www.encodeproject.org/files/ENCFF390HYW/@@download/ENCFF390HYW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF645LGE bed narrowPeak conservative idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140FCK, ENCFF419RSJ, ENCFF442SQT, ENCFF818PZY 115345 ENCODE Processing Pipeline fb4a798c650f64058ccae14f4fe08c53 https://www.encodeproject.org/files/ENCFF645LGE/@@download/ENCFF645LGE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF073EFH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF645LGE 274663 ENCODE Processing Pipeline a52b42b95491378577e72ebfc7e923c9 https://www.encodeproject.org/files/ENCFF073EFH/@@download/ENCFF073EFH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF814DYK bigBed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140FCK 11170718 ENCODE Processing Pipeline b8f394e6eae0da8623d29ec815371906 https://www.encodeproject.org/files/ENCFF814DYK/@@download/ENCFF814DYK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF396TFS bed narrowPeak optimal idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140FCK, ENCFF419RSJ, ENCFF442SQT, ENCFF818PZY 208865 ENCODE Processing Pipeline 1f7751d7034b078e160d25749f46aad8 https://www.encodeproject.org/files/ENCFF396TFS/@@download/ENCFF396TFS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF838NTP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF396TFS 420123 ENCODE Processing Pipeline e4d849f368f5cda9fc1bba8a25836ae1 https://www.encodeproject.org/files/ENCFF838NTP/@@download/ENCFF838NTP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF475BNR bigWig fold change over control ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF191RAG, ENCFF698QEQ 415836949 ENCODE Processing Pipeline f18941b588adf2cd4a5ec951fd8800e0 https://www.encodeproject.org/files/ENCFF475BNR/@@download/ENCFF475BNR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF815BAF bigWig signal p-value ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF191RAG, ENCFF698QEQ 422565542 ENCODE Processing Pipeline 38bb26d4704649ad1910f0810ee16074 https://www.encodeproject.org/files/ENCFF815BAF/@@download/ENCFF815BAF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF041XWA bigWig signal p-value ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154TCG, ENCFF698QEQ 279414644 ENCODE Processing Pipeline 32ee9a50ab4d06ea5545d0082305eb09 https://www.encodeproject.org/files/ENCFF041XWA/@@download/ENCFF041XWA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF645VKP bigWig signal p-value ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002HVX, ENCFF154TCG, ENCFF191RAG, ENCFF698QEQ 547375952 ENCODE Processing Pipeline d5d8b391bc21a5115e19fdcde4a9d0da https://www.encodeproject.org/files/ENCFF645VKP/@@download/ENCFF645VKP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF905TFT bigWig fold change over control ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154TCG, ENCFF698QEQ 280652558 ENCODE Processing Pipeline 4a4d87ed7fa81c324c97e99aad10a00f https://www.encodeproject.org/files/ENCFF905TFT/@@download/ENCFF905TFT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF175ZYB bigWig fold change over control ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002HVX, ENCFF154TCG, ENCFF191RAG, ENCFF698QEQ 664538896 ENCODE Processing Pipeline c4327394e58bcaf91c89c236be65ea0b https://www.encodeproject.org/files/ENCFF175ZYB/@@download/ENCFF175ZYB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF433LOB bigBed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF785UNT 10901030 ENCODE Processing Pipeline a18b4999f6ce6471c596385956e854a0 https://www.encodeproject.org/files/ENCFF433LOB/@@download/ENCFF433LOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF387LVG bed narrowPeak conservative idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF198ZBJ, ENCFF421BMH, ENCFF785UNT 115149 ENCODE Processing Pipeline 6f5458b100624408e03e4938796eb24d https://www.encodeproject.org/files/ENCFF387LVG/@@download/ENCFF387LVG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF516GZM bed narrowPeak optimal idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF198ZBJ, ENCFF421BMH, ENCFF785UNT 208549 ENCODE Processing Pipeline 27aebe53e5af34c047820fe32f992ef1 https://www.encodeproject.org/files/ENCFF516GZM/@@download/ENCFF516GZM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF785UNT bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF191RAG, ENCFF698QEQ 4613574 ENCODE Processing Pipeline f2a2b44392d274b5d780315d6e5b37b8 https://www.encodeproject.org/files/ENCFF785UNT/@@download/ENCFF785UNT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF499DEH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387LVG 274769 ENCODE Processing Pipeline bc74bd54781a0dcf4ae4c1298116f003 https://www.encodeproject.org/files/ENCFF499DEH/@@download/ENCFF499DEH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF421BMH bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154TCG, ENCFF698QEQ 404157 ENCODE Processing Pipeline 33f6c9179f9fb50d7635019a86d20749 https://www.encodeproject.org/files/ENCFF421BMH/@@download/ENCFF421BMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF198ZBJ bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF002HVX, ENCFF154TCG, ENCFF191RAG, ENCFF698QEQ 5215052 ENCODE Processing Pipeline 11646067e9851cd14449d0f83bd222cb https://www.encodeproject.org/files/ENCFF198ZBJ/@@download/ENCFF198ZBJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF188RRN bigBed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF421BMH 1014675 ENCODE Processing Pipeline 981801d87fb7d61e097a24e3740eb3bf https://www.encodeproject.org/files/ENCFF188RRN/@@download/ENCFF188RRN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF002QPB bigBed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF198ZBJ 11167831 ENCODE Processing Pipeline 6af8cfdb94b6e7bc944f78e7ab71f772 https://www.encodeproject.org/files/ENCFF002QPB/@@download/ENCFF002QPB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF594XJJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF516GZM 419247 ENCODE Processing Pipeline 6216ddbb63f1795dddce8efee38a2419 https://www.encodeproject.org/files/ENCFF594XJJ/@@download/ENCFF594XJJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YPU fastq reads ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 601086765 Sherman Weissman, Yale ec10e7c29f6ee6f6a720e4d9fc133e8a https://www.encodeproject.org/files/ENCFF000YPU/@@download/ENCFF000YPU.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPW fastq reads ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 301432076 Sherman Weissman, Yale 47eeae5414202e45fcdbe89fc599ebe4 https://www.encodeproject.org/files/ENCFF000YPW/@@download/ENCFF000YPW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWL bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPW 412644743 Sherman Weissman, Yale 26f2537ace952880d08b9bbf6be490d8 https://www.encodeproject.org/files/ENCFF000YWL/@@download/ENCFF000YWL.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWM bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOG 631310 Sherman Weissman, Yale 812f8b3d0196b5683780a513100a72d3 https://www.encodeproject.org/files/ENCFF000YWM/@@download/ENCFF000YWM.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWN bigWig signal ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 331946336 Sherman Weissman, Yale 33bdbc45bc5e954f44faefb097f937a5 https://www.encodeproject.org/files/ENCFF000YWN/@@download/ENCFF000YWN.bigWig hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000YWO bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPU 734321227 Sherman Weissman, Yale 2c0c1d70895d5768955a8d3f319c2732 https://www.encodeproject.org/files/ENCFF000YWO/@@download/ENCFF000YWO.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOG bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 256161 Sherman Weissman, Yale 8d7e4dc4e4c06518eba48533e260b289 https://www.encodeproject.org/files/ENCFF001VOG/@@download/ENCFF001VOG.bed.gz hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CXP bed narrowPeak optimal idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 339689 ENCODE Consortium Analysis Working Group 595e0f35033a8d5a007f811923465a60 https://www.encodeproject.org/files/ENCFF002CXP/@@download/ENCFF002CXP.bed.gz hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF018SSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXP 909622 ENCODE Consortium c2d41ef0de749a0b9b6b6438741a9472 https://www.encodeproject.org/files/ENCFF018SSF/@@download/ENCFF018SSF.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF191CWT bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPW, ENCFF643CGH 218118299 ENCODE Processing Pipeline 01c112be654a147bc6b9a2cd0d7cdd8d https://www.encodeproject.org/files/ENCFF191CWT/@@download/ENCFF191CWT.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF274IWO bam unfiltered alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPW, ENCFF643CGH 413543552 ENCODE Processing Pipeline 1dc92641576fb3481c7ab49586cac45e https://www.encodeproject.org/files/ENCFF274IWO/@@download/ENCFF274IWO.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF092XNX bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPW, ENCFF807MUK 218390667 ENCODE Processing Pipeline 78eeb392d263d16dfa42b4cdd941559c https://www.encodeproject.org/files/ENCFF092XNX/@@download/ENCFF092XNX.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF919KOW bam unfiltered alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPW, ENCFF807MUK 412988172 ENCODE Processing Pipeline b67cb4d1a679c256633b40c898ad8783 https://www.encodeproject.org/files/ENCFF919KOW/@@download/ENCFF919KOW.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF033BLI bam unfiltered alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPU, ENCFF643CGH 667024960 ENCODE Processing Pipeline 84f1b33f011bac77ce6d4f3a0da7b25e https://www.encodeproject.org/files/ENCFF033BLI/@@download/ENCFF033BLI.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF536TPK bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPU, ENCFF643CGH 317252591 ENCODE Processing Pipeline 95913fa521630bb9bf961b90c59c69f7 https://www.encodeproject.org/files/ENCFF536TPK/@@download/ENCFF536TPK.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF667RDJ bam unfiltered alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPU, ENCFF807MUK 665974435 ENCODE Processing Pipeline f058a839b2501ce355c9aa3be5c27006 https://www.encodeproject.org/files/ENCFF667RDJ/@@download/ENCFF667RDJ.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF204HNK bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPU, ENCFF807MUK 317623579 ENCODE Processing Pipeline d2882ea90f1c2722c424e6d0fc8dbc05 https://www.encodeproject.org/files/ENCFF204HNK/@@download/ENCFF204HNK.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF442LDZ bigWig signal p-value ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF191CWT, ENCFF482LDC 254522153 ENCODE Processing Pipeline d83026f5a8597fc88bf198dad958d724 https://www.encodeproject.org/files/ENCFF442LDZ/@@download/ENCFF442LDZ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF053FBY bigWig signal p-value ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF536TPK 233467418 ENCODE Processing Pipeline abca3fe5d6ee559febb12cab1b1742ce https://www.encodeproject.org/files/ENCFF053FBY/@@download/ENCFF053FBY.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF968PKA bigWig signal p-value ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF204HNK, ENCFF331ARQ 271140333 ENCODE Processing Pipeline 60d12dbf309398263ce3168d16375477 https://www.encodeproject.org/files/ENCFF968PKA/@@download/ENCFF968PKA.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF583GHT bigWig signal p-value ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092XNX, ENCFF331ARQ 218915393 ENCODE Processing Pipeline d78da9cfd93be09ab5bd12d67c80f025 https://www.encodeproject.org/files/ENCFF583GHT/@@download/ENCFF583GHT.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF561WQY bigWig signal p-value ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092XNX, ENCFF204HNK, ENCFF331ARQ 269146334 ENCODE Processing Pipeline ff24231b23db6d708853c3408068a574 https://www.encodeproject.org/files/ENCFF561WQY/@@download/ENCFF561WQY.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF489AQR bigWig signal p-value ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF191CWT, ENCFF482LDC, ENCFF536TPK 271896905 ENCODE Processing Pipeline b4ad0cbc583165b99905bcd18795d3e0 https://www.encodeproject.org/files/ENCFF489AQR/@@download/ENCFF489AQR.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF127MLV bigWig fold change over control ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092XNX, ENCFF331ARQ 92469063 ENCODE Processing Pipeline 5d78070b088a328637ae077b871d517f https://www.encodeproject.org/files/ENCFF127MLV/@@download/ENCFF127MLV.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF643UVE bigWig fold change over control ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF191CWT, ENCFF482LDC 92181237 ENCODE Processing Pipeline d318079ac7a25e6a0fb4659c475dad74 https://www.encodeproject.org/files/ENCFF643UVE/@@download/ENCFF643UVE.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF316COU bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF504GWC 6953101 ENCODE Processing Pipeline 6bc05edd16538b55c40c9bedb45d1c99 https://www.encodeproject.org/files/ENCFF316COU/@@download/ENCFF316COU.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF571LAV bigWig fold change over control ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF204HNK, ENCFF331ARQ 133486304 ENCODE Processing Pipeline 663a5b0bbf2d6e8eb3e594db66c8401d https://www.encodeproject.org/files/ENCFF571LAV/@@download/ENCFF571LAV.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF254MXE bigWig fold change over control ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092XNX, ENCFF204HNK, ENCFF331ARQ 194433179 ENCODE Processing Pipeline b30f8050afbdf4f167ceded6612dc0c2 https://www.encodeproject.org/files/ENCFF254MXE/@@download/ENCFF254MXE.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF042IXM bigWig fold change over control ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF191CWT, ENCFF482LDC, ENCFF536TPK 198136226 ENCODE Processing Pipeline bef5609101bf2aeb2ae3f6919bd5c597 https://www.encodeproject.org/files/ENCFF042IXM/@@download/ENCFF042IXM.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF439GEX bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF191CWT, ENCFF482LDC 2977390 ENCODE Processing Pipeline 097ae558539e388f566666a798bcb40c https://www.encodeproject.org/files/ENCFF439GEX/@@download/ENCFF439GEX.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF382GUS bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF191CWT, ENCFF482LDC, ENCFF536TPK 5910082 ENCODE Processing Pipeline b3294ec7a0f631d7f3616a5a6e3736fa https://www.encodeproject.org/files/ENCFF382GUS/@@download/ENCFF382GUS.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF582LDX bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF439GEX 6811075 ENCODE Processing Pipeline aa5fadad6af28ad1ce048b9e199a49be https://www.encodeproject.org/files/ENCFF582LDX/@@download/ENCFF582LDX.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF747YEV bigWig fold change over control ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF536TPK 133408559 ENCODE Processing Pipeline 96b7d3416600c2989b93cfc79ec0c7bc https://www.encodeproject.org/files/ENCFF747YEV/@@download/ENCFF747YEV.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF960XPL bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092XNX, ENCFF204HNK, ENCFF331ARQ 5909698 ENCODE Processing Pipeline eafe5d6aa8253767b2ff8a43a373dedc https://www.encodeproject.org/files/ENCFF960XPL/@@download/ENCFF960XPL.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF504GWC bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092XNX, ENCFF331ARQ 3084780 ENCODE Processing Pipeline 579a7e054022988ab00ef76fb44b1f7a https://www.encodeproject.org/files/ENCFF504GWC/@@download/ENCFF504GWC.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF236JJW bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF536TPK 4826877 ENCODE Processing Pipeline 54e0613317285100475f69a1ef9c4643 https://www.encodeproject.org/files/ENCFF236JJW/@@download/ENCFF236JJW.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF794PUU bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF070AMD 10648112 ENCODE Processing Pipeline 26306634d7fbcff817ff80dc926a0a0f https://www.encodeproject.org/files/ENCFF794PUU/@@download/ENCFF794PUU.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF537BOT bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF382GUS 12134948 ENCODE Processing Pipeline c29236a74af41dd02f19d493dc6dd928 https://www.encodeproject.org/files/ENCFF537BOT/@@download/ENCFF537BOT.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF070AMD bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF204HNK, ENCFF331ARQ 4885849 ENCODE Processing Pipeline b60020d752c55ab932b317dfae0c5108 https://www.encodeproject.org/files/ENCFF070AMD/@@download/ENCFF070AMD.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF649PVK bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF857WHF 778980 ENCODE Processing Pipeline 9a6949ac8d7a7769b3fbc20c1536fdbb https://www.encodeproject.org/files/ENCFF649PVK/@@download/ENCFF649PVK.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF644EKX bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236JJW 10523804 ENCODE Processing Pipeline 6c91548ebd0d0ccf189c84fdb30baa69 https://www.encodeproject.org/files/ENCFF644EKX/@@download/ENCFF644EKX.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF632ZWX bigBed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF960XPL 12139772 ENCODE Processing Pipeline 8fd13a080d376776e68525751c547e9d https://www.encodeproject.org/files/ENCFF632ZWX/@@download/ENCFF632ZWX.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF231OJM bed narrowPeak conservative idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF070AMD, ENCFF504GWC, ENCFF960XPL 368368 ENCODE Processing Pipeline bad16d7b6f9665b5936a9374ea333c51 https://www.encodeproject.org/files/ENCFF231OJM/@@download/ENCFF231OJM.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF496FOS bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF231OJM 773914 ENCODE Processing Pipeline a55c76d676bf7d4064377418304e078e https://www.encodeproject.org/files/ENCFF496FOS/@@download/ENCFF496FOS.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF853ZMA bed narrowPeak optimal idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF070AMD, ENCFF504GWC, ENCFF960XPL 383287 ENCODE Processing Pipeline 414b0ad344508990af3dd892c5653dd3 https://www.encodeproject.org/files/ENCFF853ZMA/@@download/ENCFF853ZMA.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF857WHF bed narrowPeak conservative idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236JJW, ENCFF382GUS, ENCFF419RSJ, ENCFF439GEX 371203 ENCODE Processing Pipeline 126e57955e13ccad4e0fba1aabe85dc3 https://www.encodeproject.org/files/ENCFF857WHF/@@download/ENCFF857WHF.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF099NYA bed narrowPeak optimal idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF236JJW, ENCFF382GUS, ENCFF419RSJ, ENCFF439GEX 383286 ENCODE Processing Pipeline c596a6ebffcfce8c02e2dedd3db4468e https://www.encodeproject.org/files/ENCFF099NYA/@@download/ENCFF099NYA.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF989BFD bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF099NYA 974628 ENCODE Processing Pipeline 8ea471580bcec54ce2124aa82fe8557d https://www.encodeproject.org/files/ENCFF989BFD/@@download/ENCFF989BFD.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF596SMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF853ZMA 973605 ENCODE Processing Pipeline d34d7f9b33bd8d0c088fb0f671aee5fe https://www.encodeproject.org/files/ENCFF596SMQ/@@download/ENCFF596SMQ.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001GXL bigBed broadPeak hotspots ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMB 4657074 John Stamatoyannopoulos, UW 264698ca2d89a406b8f19fc9b841eca2 https://www.encodeproject.org/files/ENCFF001GXL/@@download/ENCFF001GXL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXM bigBed broadPeak hotspots ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMD 5379898 John Stamatoyannopoulos, UW bb17e4338c087b332d8849ace8cf41a9 https://www.encodeproject.org/files/ENCFF001GXM/@@download/ENCFF001GXM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXN bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMC 1439868 John Stamatoyannopoulos, UW 8cc68c8f261f43c2078b838fb51a7a2e https://www.encodeproject.org/files/ENCFF001GXN/@@download/ENCFF001GXN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXO bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XME 1081425 John Stamatoyannopoulos, UW 7976066c1a00dd180f273354e2fecadb https://www.encodeproject.org/files/ENCFF001GXO/@@download/ENCFF001GXO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXP bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXV 852008752 John Stamatoyannopoulos, UW 6150710e5e2b586df77607bda94beb74 https://www.encodeproject.org/files/ENCFF001GXP/@@download/ENCFF001GXP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXQ bigWig raw signal ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXP 152305027 John Stamatoyannopoulos, UW 6e55dfdce2be39f0073cb0e56e59003e https://www.encodeproject.org/files/ENCFF001GXQ/@@download/ENCFF001GXQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXR bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXW 1020094184 John Stamatoyannopoulos, UW 994707fd738c97162efaa99786239980 https://www.encodeproject.org/files/ENCFF001GXR/@@download/ENCFF001GXR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXS bigWig raw signal ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXR 188845546 John Stamatoyannopoulos, UW 4e85c2fb76d8806cec65427b09a2fc83 https://www.encodeproject.org/files/ENCFF001GXS/@@download/ENCFF001GXS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXV fastq reads ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 975870126 John Stamatoyannopoulos, UW e69b1076ece750fdabafde43a38260ae https://www.encodeproject.org/files/ENCFF001GXV/@@download/ENCFF001GXV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GXZ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001GXW fastq reads ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1111267247 John Stamatoyannopoulos, UW 90e90cce1e2452dc6ec017c187735e3a https://www.encodeproject.org/files/ENCFF001GXW/@@download/ENCFF001GXW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GXZ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001XMB bed broadPeak hotspots ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXP 2531211 John Stamatoyannopoulos, UW a7a91dc674ecb3dfb9707e19931b3e63 https://www.encodeproject.org/files/ENCFF001XMB/@@download/ENCFF001XMB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001XMC bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXP 843481 John Stamatoyannopoulos, UW d61bc0e3408f71f7fcf0c2dd7f4617be https://www.encodeproject.org/files/ENCFF001XMC/@@download/ENCFF001XMC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001XMD bed broadPeak hotspots ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXR 2952941 John Stamatoyannopoulos, UW 96297f24e71ff133fb0f39996d92eb7b https://www.encodeproject.org/files/ENCFF001XMD/@@download/ENCFF001XMD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF001XME bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXR 767870 John Stamatoyannopoulos, UW 54073de26393c7591464492858d7fbba https://www.encodeproject.org/files/ENCFF001XME/@@download/ENCFF001XME.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF002DBY bed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GXP, ENCFF001GXR 987636 ENCODE Consortium Analysis Working Group 715ea220ec130c9be208be04461c66dc https://www.encodeproject.org/files/ENCFF002DBY/@@download/ENCFF002DBY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF891EAD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DBY 2084715 ENCODE Consortium ea994fb9c36d993db56644af6f1fa964 https://www.encodeproject.org/files/ENCFF891EAD/@@download/ENCFF891EAD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF663QUY bam unfiltered alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXV, ENCFF643CGH 1068805928 ENCODE Processing Pipeline f1a1380b87fc3e05968d55ed7c3ed5a0 https://www.encodeproject.org/files/ENCFF663QUY/@@download/ENCFF663QUY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF278LWC bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXV, ENCFF643CGH 656700088 ENCODE Processing Pipeline 551e87fd7340bb23f3bd33650a32838f https://www.encodeproject.org/files/ENCFF278LWC/@@download/ENCFF278LWC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF153KKT bam unfiltered alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXW, ENCFF643CGH 1263598157 ENCODE Processing Pipeline 9be248df62182e4b468258d8cfc7379f https://www.encodeproject.org/files/ENCFF153KKT/@@download/ENCFF153KKT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF692VVV bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXW, ENCFF643CGH 847082509 ENCODE Processing Pipeline f6f58a7c6624da284dd51588dc3853ac https://www.encodeproject.org/files/ENCFF692VVV/@@download/ENCFF692VVV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF358ZJT bam unfiltered alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXW, ENCFF807MUK 1258596396 ENCODE Processing Pipeline 9ef23fe4124924f5d1e55c7071e086a4 https://www.encodeproject.org/files/ENCFF358ZJT/@@download/ENCFF358ZJT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF304HDA bam unfiltered alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXV, ENCFF807MUK 1065523688 ENCODE Processing Pipeline 5102da02c7f571debce06770f6e1feec https://www.encodeproject.org/files/ENCFF304HDA/@@download/ENCFF304HDA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF263AQI bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXW, ENCFF807MUK 847310833 ENCODE Processing Pipeline 4344370e42bb112d21735f1ae397075f https://www.encodeproject.org/files/ENCFF263AQI/@@download/ENCFF263AQI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF812WDD bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXV, ENCFF807MUK 656906996 ENCODE Processing Pipeline 0431cc5042e78a534d316979b696761f https://www.encodeproject.org/files/ENCFF812WDD/@@download/ENCFF812WDD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF517QQL bigWig signal p-value ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF073RIN, ENCFF278LWC 402904148 ENCODE Processing Pipeline 85e1112cbd6cfecfdc3eae35964c835e https://www.encodeproject.org/files/ENCFF517QQL/@@download/ENCFF517QQL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF613MJB bigWig signal p-value ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF073RIN, ENCFF692VVV 448617767 ENCODE Processing Pipeline aa8cb25a0fcb2370a2b97a425d7e3aec https://www.encodeproject.org/files/ENCFF613MJB/@@download/ENCFF613MJB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF573ZCP bigWig signal p-value ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF073RIN, ENCFF278LWC, ENCFF692VVV 506243476 ENCODE Processing Pipeline 044d4143135e1130e6bdfe75dc279b75 https://www.encodeproject.org/files/ENCFF573ZCP/@@download/ENCFF573ZCP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF220ZCV bigWig fold change over control ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF073RIN, ENCFF278LWC 293192189 ENCODE Processing Pipeline 0d0a6dbcd07af035d7cb059cc75d2c66 https://www.encodeproject.org/files/ENCFF220ZCV/@@download/ENCFF220ZCV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF930JHF bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF073RIN, ENCFF278LWC, ENCFF692VVV 4850516 ENCODE Processing Pipeline daf6dacb3ea6fc57238c5cb797a550a9 https://www.encodeproject.org/files/ENCFF930JHF/@@download/ENCFF930JHF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF070WEI bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF073RIN, ENCFF278LWC 4399085 ENCODE Processing Pipeline 77d79aeb161636cc4d893fb233764fdd https://www.encodeproject.org/files/ENCFF070WEI/@@download/ENCFF070WEI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF552VBO bigWig fold change over control ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF073RIN, ENCFF692VVV 379753234 ENCODE Processing Pipeline 934871ff5a87be4997b5dce37b5732a6 https://www.encodeproject.org/files/ENCFF552VBO/@@download/ENCFF552VBO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF336CTF bigWig fold change over control ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF073RIN, ENCFF278LWC, ENCFF692VVV 582602790 ENCODE Processing Pipeline 1f90d1f4bc34b715120a9c9a2edda94e https://www.encodeproject.org/files/ENCFF336CTF/@@download/ENCFF336CTF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF451JZY bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF073RIN, ENCFF692VVV 4391770 ENCODE Processing Pipeline 4e86bbf78c1e6c79c4d3dde2cae8900c https://www.encodeproject.org/files/ENCFF451JZY/@@download/ENCFF451JZY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF518WIE bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF451JZY 11055156 ENCODE Processing Pipeline 7a92e78b2fd8b09020487a41d91f30fd https://www.encodeproject.org/files/ENCFF518WIE/@@download/ENCFF518WIE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF086IOI bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF070WEI 10898567 ENCODE Processing Pipeline d3fef300ebff62e2752fe1c6de0f1d42 https://www.encodeproject.org/files/ENCFF086IOI/@@download/ENCFF086IOI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF543SAF bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF930JHF 11601673 ENCODE Processing Pipeline dbb34a6b4f598483f376bd7691f68042 https://www.encodeproject.org/files/ENCFF543SAF/@@download/ENCFF543SAF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF287RCH bed narrowPeak conservative idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF070WEI, ENCFF419RSJ, ENCFF451JZY, ENCFF930JHF 577512 ENCODE Processing Pipeline 4d506d53690b6dec195c5b53e21ce0f7 https://www.encodeproject.org/files/ENCFF287RCH/@@download/ENCFF287RCH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF491CDT bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF287RCH 1108421 ENCODE Processing Pipeline d2225c7b5f4ae33ecae8448abd5e8c85 https://www.encodeproject.org/files/ENCFF491CDT/@@download/ENCFF491CDT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF119XBW bed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF070WEI, ENCFF419RSJ, ENCFF451JZY, ENCFF930JHF 639975 ENCODE Processing Pipeline 8a84fc47d1cf5efbded4e4e6703d558b https://www.encodeproject.org/files/ENCFF119XBW/@@download/ENCFF119XBW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF629VTC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF119XBW 1192702 ENCODE Processing Pipeline 41dfc7f8a5f03c2bf39e20462f531300 https://www.encodeproject.org/files/ENCFF629VTC/@@download/ENCFF629VTC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF528DMI bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF696BBG, ENCFF812WDD 4401073 ENCODE Processing Pipeline 820fbed7097a8adba626db1c162985ef https://www.encodeproject.org/files/ENCFF528DMI/@@download/ENCFF528DMI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF414NDJ bigWig signal p-value ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF696BBG, ENCFF812WDD 484483328 ENCODE Processing Pipeline 93a1ac29f9c44144a68f2ea4e8af88ae https://www.encodeproject.org/files/ENCFF414NDJ/@@download/ENCFF414NDJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF572FCK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF245PXW 1179519 ENCODE Processing Pipeline 9ec25c7c783b06c1531f9d027e606ce5 https://www.encodeproject.org/files/ENCFF572FCK/@@download/ENCFF572FCK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF491CCM bigWig fold change over control ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF263AQI, ENCFF696BBG 379323139 ENCODE Processing Pipeline 564d88fe8c0b7ad91af9c08fb33011ad https://www.encodeproject.org/files/ENCFF491CCM/@@download/ENCFF491CCM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF399ZBJ bigWig fold change over control ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF263AQI, ENCFF696BBG, ENCFF812WDD 581938909 ENCODE Processing Pipeline fe22698d720eaa5bd210741afb72364a https://www.encodeproject.org/files/ENCFF399ZBJ/@@download/ENCFF399ZBJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF579CNJ bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF053EST 11567451 ENCODE Processing Pipeline b8dd530a5e2c958bf3d57bdf9c9fb597 https://www.encodeproject.org/files/ENCFF579CNJ/@@download/ENCFF579CNJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF627BSH bigWig signal p-value ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF263AQI, ENCFF696BBG 455919816 ENCODE Processing Pipeline 4f5f20db682acd74561132a1709ddae7 https://www.encodeproject.org/files/ENCFF627BSH/@@download/ENCFF627BSH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF949AFF bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF263AQI, ENCFF696BBG 4359042 ENCODE Processing Pipeline 6f86a2b9f5b2b6e1f8f5b2500677e505 https://www.encodeproject.org/files/ENCFF949AFF/@@download/ENCFF949AFF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF061RGB bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF528DMI 10895833 ENCODE Processing Pipeline 7d59cd848cd32dd1b5147a1441a55a8e https://www.encodeproject.org/files/ENCFF061RGB/@@download/ENCFF061RGB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF798JKU bigBed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF949AFF 11007700 ENCODE Processing Pipeline 18120091f0fde5ac43d16395c56e921f https://www.encodeproject.org/files/ENCFF798JKU/@@download/ENCFF798JKU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF998CYP bigWig fold change over control ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF696BBG, ENCFF812WDD 292959927 ENCODE Processing Pipeline 6e6a7f016e7b4be0509e53f597183733 https://www.encodeproject.org/files/ENCFF998CYP/@@download/ENCFF998CYP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF989FAS bigWig signal p-value ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF263AQI, ENCFF696BBG, ENCFF812WDD 506410905 ENCODE Processing Pipeline 5bc5430e6b033344021e2b994c078ba6 https://www.encodeproject.org/files/ENCFF989FAS/@@download/ENCFF989FAS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF053EST bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF263AQI, ENCFF696BBG, ENCFF812WDD 4831507 ENCODE Processing Pipeline d7cdae9a562f106b12ccfbf10514071f https://www.encodeproject.org/files/ENCFF053EST/@@download/ENCFF053EST.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF245PXW bed narrowPeak optimal idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF053EST, ENCFF528DMI, ENCFF949AFF 631971 ENCODE Processing Pipeline 962745b1d6d487ac2007f2d725ee8996 https://www.encodeproject.org/files/ENCFF245PXW/@@download/ENCFF245PXW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF312JFX bed narrowPeak conservative idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF053EST, ENCFF528DMI, ENCFF949AFF 576654 ENCODE Processing Pipeline 045e4629eaffb88abafc628741a384a7 https://www.encodeproject.org/files/ENCFF312JFX/@@download/ENCFF312JFX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF021TSQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF312JFX 1106181 ENCODE Processing Pipeline 37d9edd4a4e548e4a4a1000c21c27416 https://www.encodeproject.org/files/ENCFF021TSQ/@@download/ENCFF021TSQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF758ZDB bigWig signal p-value ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF577VTU, ENCFF876ZSM 422390717 ENCODE Processing Pipeline cb0041281036fc03b2a3192ec485111c https://www.encodeproject.org/files/ENCFF758ZDB/@@download/ENCFF758ZDB.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF242DVN bigWig fold change over control ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF577VTU, ENCFF876ZSM 348458220 ENCODE Processing Pipeline ec812403808e79344ff2b10e6cfabe74 https://www.encodeproject.org/files/ENCFF242DVN/@@download/ENCFF242DVN.bigWig hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF992AXF bed narrowPeak peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF577VTU, ENCFF876ZSM 5416341 ENCODE Processing Pipeline 189c0cf31563fea8bd42f85af3204694 https://www.encodeproject.org/files/ENCFF992AXF/@@download/ENCFF992AXF.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF599BQG bigBed narrowPeak peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF992AXF 13206383 ENCODE Processing Pipeline 378c35a628743f45f5bec2aefe561f25 https://www.encodeproject.org/files/ENCFF599BQG/@@download/ENCFF599BQG.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF537YZK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF001TDO, ENCFF992AXF 113791 ENCODE Processing Pipeline edd40b2b041321469fd85d2adebe7987 https://www.encodeproject.org/files/ENCFF537YZK/@@download/ENCFF537YZK.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF074KTC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF537YZK 223224 ENCODE Processing Pipeline 99572d10b79194991c21bd88acfd817f https://www.encodeproject.org/files/ENCFF074KTC/@@download/ENCFF074KTC.bigBed hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF642WGW bigWig signal p-value ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF297HWT, ENCFF802YSD 508274163 ENCODE Processing Pipeline c409b9fa01c4a0b93f3183ad374d212e https://www.encodeproject.org/files/ENCFF642WGW/@@download/ENCFF642WGW.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF984VPB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF419RSJ, ENCFF794PBV 127349 ENCODE Processing Pipeline ba6a54e1f7f024c4652b3a3d81c5a06b https://www.encodeproject.org/files/ENCFF984VPB/@@download/ENCFF984VPB.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF868MDD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF984VPB 292212 ENCODE Processing Pipeline 4ae55d0dc009793d49bea9098d5ed007 https://www.encodeproject.org/files/ENCFF868MDD/@@download/ENCFF868MDD.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF286MEX bigWig fold change over control ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF297HWT, ENCFF802YSD 355761733 ENCODE Processing Pipeline c99890728c40c1e01382ce8c267c5414 https://www.encodeproject.org/files/ENCFF286MEX/@@download/ENCFF286MEX.bigWig GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF794PBV bed narrowPeak peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF297HWT, ENCFF802YSD 5425905 ENCODE Processing Pipeline 58caacbdc4556655ca3df12d4da105a2 https://www.encodeproject.org/files/ENCFF794PBV/@@download/ENCFF794PBV.bed.gz GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF232ANG bigBed narrowPeak peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF794PBV 13229151 ENCODE Processing Pipeline 6aa9d27b4996a3ed8ccebef26e50f1c0 https://www.encodeproject.org/files/ENCFF232ANG/@@download/ENCFF232ANG.bigBed GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF112JMO fastq reads ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 1 50 single-ended 1150499219 Richard Myers, HAIB d47f887802b933a67aa8d5683a3f2058 https://www.encodeproject.org/files/ENCFF112JMO/@@download/ENCFF112JMO.fastq.gz Illumina HiSeq 2000 /files/ENCFF963TEZ/ released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF897XFT bam unfiltered alignments ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 50 ENCFF112JMO, ENCFF643CGH 1219602769 ENCODE Processing Pipeline 5c33f97f6e2afcfe57a763eb5b009d0d https://www.encodeproject.org/files/ENCFF897XFT/@@download/ENCFF897XFT.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF577VTU bam alignments ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 50 ENCFF112JMO, ENCFF807MUK 800612942 ENCODE Processing Pipeline cf7b61dd18d3507ea28125f3e2683647 https://www.encodeproject.org/files/ENCFF577VTU/@@download/ENCFF577VTU.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF734FEU bam unfiltered alignments ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 50 ENCFF112JMO, ENCFF807MUK 1217172990 ENCODE Processing Pipeline 157b8e516d8e1fdbe8835af63f6ff695 https://www.encodeproject.org/files/ENCFF734FEU/@@download/ENCFF734FEU.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF297HWT bam alignments ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 50 ENCFF112JMO, ENCFF643CGH 800528241 ENCODE Processing Pipeline 6aec3473530f36093dedbe371f3a82b9 https://www.encodeproject.org/files/ENCFF297HWT/@@download/ENCFF297HWT.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF529XNL fastq reads ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 1 36 single-ended 1083431697 Bradley Bernstein, Broad def40e1d63e80a18563f81b307f9360c https://www.encodeproject.org/files/ENCFF529XNL/@@download/ENCFF529XNL.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF979OQS fastq reads ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 1 36 single-ended 1092840028 Bradley Bernstein, Broad 073b80ff8cb8cce07ab30a4d65d0ec44 https://www.encodeproject.org/files/ENCFF979OQS/@@download/ENCFF979OQS.fastq.gz Illumina HiSeq 2000 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF282LPB bam unfiltered alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 36 ENCFF807MUK, ENCFF979OQS 1429790886 ENCODE Processing Pipeline 8c8a1bb9870bc898ead4ce0cab1ea97f https://www.encodeproject.org/files/ENCFF282LPB/@@download/ENCFF282LPB.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF400CWI bam unfiltered alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 36 ENCFF529XNL, ENCFF643CGH 1365982616 ENCODE Processing Pipeline f9176ee567167f1e47572f2ec56239c5 https://www.encodeproject.org/files/ENCFF400CWI/@@download/ENCFF400CWI.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF097MJR bam unfiltered alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 36 ENCFF643CGH, ENCFF979OQS 1436969079 ENCODE Processing Pipeline 33d043d1145d1548b80833826b756656 https://www.encodeproject.org/files/ENCFF097MJR/@@download/ENCFF097MJR.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF805INP bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 36 ENCFF807MUK, ENCFF979OQS 844811811 ENCODE Processing Pipeline 6597b8f9c7526632626268a1894a7cf7 https://www.encodeproject.org/files/ENCFF805INP/@@download/ENCFF805INP.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF878IXK bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 36 ENCFF529XNL, ENCFF807MUK 756692158 ENCODE Processing Pipeline 01cad27cbc497aa4081fc6793ecbd44e https://www.encodeproject.org/files/ENCFF878IXK/@@download/ENCFF878IXK.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF877AJH bam unfiltered alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 36 ENCFF529XNL, ENCFF807MUK 1360632386 ENCODE Processing Pipeline 5b920fc7b4145b34062ed17089bd60ae https://www.encodeproject.org/files/ENCFF877AJH/@@download/ENCFF877AJH.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF746GKF bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 36 ENCFF529XNL, ENCFF643CGH 756491130 ENCODE Processing Pipeline e7d874a94a8bec0a83e919127571ff75 https://www.encodeproject.org/files/ENCFF746GKF/@@download/ENCFF746GKF.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF500WMP bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 36 ENCFF643CGH, ENCFF979OQS 844613040 ENCODE Processing Pipeline 53057478df59ed0b9173750db43e0ed6 https://www.encodeproject.org/files/ENCFF500WMP/@@download/ENCFF500WMP.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF454FLH bigWig signal p-value ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF805INP 1648344971 ENCODE Processing Pipeline db40a388fc741c192603302322ec8abd https://www.encodeproject.org/files/ENCFF454FLH/@@download/ENCFF454FLH.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF918EIS bigWig signal p-value ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF878IXK 1713475570 ENCODE Processing Pipeline 0fb8cc8e8bbbccba5d09daf6488aaea1 https://www.encodeproject.org/files/ENCFF918EIS/@@download/ENCFF918EIS.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF991EFA bigWig fold change over control ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF805INP 1193168319 ENCODE Processing Pipeline 3fe91ef3a870cad13312f5a9f1b30217 https://www.encodeproject.org/files/ENCFF991EFA/@@download/ENCFF991EFA.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF609OLY bigWig signal p-value ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF727XHW, ENCFF805INP, ENCFF878IXK 2032014414 ENCODE Processing Pipeline e400bcd07c99b348a242cc714f41400e https://www.encodeproject.org/files/ENCFF609OLY/@@download/ENCFF609OLY.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF859HBS bigWig fold change over control ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF878IXK 1379580178 ENCODE Processing Pipeline 1187d09f8e4c9337de1bdfd7b49d80ee https://www.encodeproject.org/files/ENCFF859HBS/@@download/ENCFF859HBS.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF421WSN bigBed narrowPeak conservative idr thresholded peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF396VHM 152637 ENCODE Processing Pipeline 2e454e7cdf4d78a6a4b288db4461703c https://www.encodeproject.org/files/ENCFF421WSN/@@download/ENCFF421WSN.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF815SUU bigWig fold change over control ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF727XHW, ENCFF805INP, ENCFF878IXK 1894147671 ENCODE Processing Pipeline 9da239128fbfd7c1d5ceffd47e6dfec9 https://www.encodeproject.org/files/ENCFF815SUU/@@download/ENCFF815SUU.bigWig hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF384XYJ bed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF805INP 6548403 ENCODE Processing Pipeline 39d5602f2d80385b584e10b809583d54 https://www.encodeproject.org/files/ENCFF384XYJ/@@download/ENCFF384XYJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF405QLV bed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF878IXK 6293830 ENCODE Processing Pipeline e10d332e424943b4d415dabef7a2ae74 https://www.encodeproject.org/files/ENCFF405QLV/@@download/ENCFF405QLV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF485GXE bed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF727XHW, ENCFF805INP, ENCFF878IXK 6969377 ENCODE Processing Pipeline 619a34852504365f516636cc2bb47767 https://www.encodeproject.org/files/ENCFF485GXE/@@download/ENCFF485GXE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF332SVV bigBed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 ENCFF384XYJ 13343928 ENCODE Processing Pipeline fef04529804b45d1b6a24d0b947bd435 https://www.encodeproject.org/files/ENCFF332SVV/@@download/ENCFF332SVV.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF396VHM bed narrowPeak conservative idr thresholded peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF384XYJ, ENCFF405QLV, ENCFF485GXE 35938 ENCODE Processing Pipeline e01926173bcf1fc929ab2f789d8a4999 https://www.encodeproject.org/files/ENCFF396VHM/@@download/ENCFF396VHM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF485WCF bed narrowPeak optimal idr thresholded peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF384XYJ, ENCFF405QLV, ENCFF485GXE 50127 ENCODE Processing Pipeline 64865d8a339096577e031f83de5b9e37 https://www.encodeproject.org/files/ENCFF485WCF/@@download/ENCFF485WCF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF636NMA bigBed narrowPeak optimal idr thresholded peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF485WCF 179339 ENCODE Processing Pipeline e65afb81e07c38645f0917ef95627520 https://www.encodeproject.org/files/ENCFF636NMA/@@download/ENCFF636NMA.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF314ZGB bigBed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 ENCFF405QLV 13516207 ENCODE Processing Pipeline 600982b70dcd8a3e3544174f6f80a336 https://www.encodeproject.org/files/ENCFF314ZGB/@@download/ENCFF314ZGB.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF541YNM bigBed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF485GXE 13365538 ENCODE Processing Pipeline 39cde6e78fabebfbe15418aa10e74a15 https://www.encodeproject.org/files/ENCFF541YNM/@@download/ENCFF541YNM.bigBed hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF138BAE bam unfiltered alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF109NTO, ENCFF693JKI, ENCFF807MUK 5277957027 ENCODE Processing Pipeline 41f17c6d1172607d02194e9ed2f84494 https://www.encodeproject.org/files/ENCFF138BAE/@@download/ENCFF138BAE.bam hg19 released missing genetic modification characterization ENCFF902YFJ bam unfiltered alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF016FNK, ENCFF018HQR, ENCFF807MUK 5960673625 ENCODE Processing Pipeline 2db6981997684523d3ab6360fe00b759 https://www.encodeproject.org/files/ENCFF902YFJ/@@download/ENCFF902YFJ.bam hg19 released missing genetic modification characterization ENCFF109NTO fastq reads ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 2 ENCFF693JKI 2436438396 Michael Snyder, Stanford e83d4c3286bf05cced3f10c7a93b6645 SRA:SRR5111080 https://www.encodeproject.org/files/ENCFF109NTO/@@download/ENCFF109NTO.fastq.gz Illumina HiSeq 2000 /files/ENCFF340RXU/ released missing genetic modification characterization ENCFF693JKI fastq reads ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 1 100 paired-ended 1 ENCFF109NTO 2433707547 Michael Snyder, Stanford 6f5234f3d72ee3da80b3b56a967719c1 SRA:SRR5111080 https://www.encodeproject.org/files/ENCFF693JKI/@@download/ENCFF693JKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF698OMK/ released missing genetic modification characterization ENCFF018HQR fastq reads ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 1 ENCFF016FNK 2770431380 Michael Snyder, Stanford 279d754d9808341b32be5e093707e806 SRA:SRR5111079 https://www.encodeproject.org/files/ENCFF018HQR/@@download/ENCFF018HQR.fastq.gz Illumina HiSeq 2000 /files/ENCFF698OMK/ released missing genetic modification characterization ENCFF016FNK fastq reads ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 1 100 paired-ended 2 ENCFF018HQR 2758667004 Michael Snyder, Stanford fc091d24e1fcee40075c6c82c482c43e SRA:SRR5111079 https://www.encodeproject.org/files/ENCFF016FNK/@@download/ENCFF016FNK.fastq.gz Illumina HiSeq 2000 /files/ENCFF340RXU/ released missing genetic modification characterization ENCFF800DAY bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF109NTO, ENCFF693JKI, ENCFF807MUK 4500247179 ENCODE Processing Pipeline 910c7a064b27e26fea4bdb268bb377d7 https://www.encodeproject.org/files/ENCFF800DAY/@@download/ENCFF800DAY.bam hg19 released missing genetic modification characterization ENCFF465GPJ bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF016FNK, ENCFF018HQR, ENCFF807MUK 5182697564 ENCODE Processing Pipeline cf8301206a1fca0a2e466c90573af3cb https://www.encodeproject.org/files/ENCFF465GPJ/@@download/ENCFF465GPJ.bam hg19 released missing genetic modification characterization ENCFF437TVW bigWig signal p-value ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF465GPJ, ENCFF774NMX, ENCFF800DAY 1413415721 ENCODE Processing Pipeline 429f7d69ff96a51f8932aa818fd9b373 https://www.encodeproject.org/files/ENCFF437TVW/@@download/ENCFF437TVW.bigWig hg19 released missing genetic modification characterization ENCFF829DDT bigWig fold change over control ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF465GPJ, ENCFF774NMX, ENCFF800DAY 1855393414 ENCODE Processing Pipeline a358dde7a72614346619dcab3ca9b8bd https://www.encodeproject.org/files/ENCFF829DDT/@@download/ENCFF829DDT.bigWig hg19 released missing genetic modification characterization ENCFF878XMR bam unfiltered alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF109NTO, ENCFF643CGH, ENCFF693JKI 5285270120 ENCODE Processing Pipeline 8641fdd9b4e4701dd79cf914b1df78e0 https://www.encodeproject.org/files/ENCFF878XMR/@@download/ENCFF878XMR.bam GRCh38 released missing genetic modification characterization ENCFF774RUP bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF109NTO, ENCFF643CGH, ENCFF693JKI 4503725850 ENCODE Processing Pipeline da3182d726aca0a28b985e493e142a1d https://www.encodeproject.org/files/ENCFF774RUP/@@download/ENCFF774RUP.bam GRCh38 released missing genetic modification characterization ENCFF954ERL bam unfiltered alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF016FNK, ENCFF018HQR, ENCFF643CGH 5968672090 ENCODE Processing Pipeline 3ef2499326df59e0d1b89356d0f2d07f https://www.encodeproject.org/files/ENCFF954ERL/@@download/ENCFF954ERL.bam GRCh38 released missing genetic modification characterization ENCFF892LAS bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF016FNK, ENCFF018HQR, ENCFF643CGH 5187543119 ENCODE Processing Pipeline 668131cdcfda2364a999d05cac2c0e45 https://www.encodeproject.org/files/ENCFF892LAS/@@download/ENCFF892LAS.bam GRCh38 released missing genetic modification characterization ENCFF593EFQ bigWig signal p-value ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF780MVW, ENCFF892LAS 1231601943 ENCODE Processing Pipeline 9a7dbf838b72065e2d9faacd43af4e82 https://www.encodeproject.org/files/ENCFF593EFQ/@@download/ENCFF593EFQ.bigWig GRCh38 released missing genetic modification characterization ENCFF180WCG bigWig signal p-value ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774RUP, ENCFF780MVW 1030681792 ENCODE Processing Pipeline 944893f5a13ca06e4ac301bc65a8177e https://www.encodeproject.org/files/ENCFF180WCG/@@download/ENCFF180WCG.bigWig GRCh38 released missing genetic modification characterization ENCFF609DYE bigWig signal p-value ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF774RUP, ENCFF780MVW, ENCFF892LAS 1415800780 ENCODE Processing Pipeline f75976541d6809ce80ade3581a775ce7 https://www.encodeproject.org/files/ENCFF609DYE/@@download/ENCFF609DYE.bigWig GRCh38 released missing genetic modification characterization ENCFF734QEM bigWig fold change over control ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF780MVW, ENCFF892LAS 1312047970 ENCODE Processing Pipeline 783a59abec113082b6ec05f5adcd6cb1 https://www.encodeproject.org/files/ENCFF734QEM/@@download/ENCFF734QEM.bigWig GRCh38 released missing genetic modification characterization ENCFF077WVE bigWig fold change over control ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774RUP, ENCFF780MVW 1226203571 ENCODE Processing Pipeline e133486a3907db175e0c51e51f728fd8 https://www.encodeproject.org/files/ENCFF077WVE/@@download/ENCFF077WVE.bigWig GRCh38 released missing genetic modification characterization ENCFF415CUC bigWig fold change over control ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF774RUP, ENCFF780MVW, ENCFF892LAS 1860657297 ENCODE Processing Pipeline 116a3ca0abc60a335cb475211edfabf0 https://www.encodeproject.org/files/ENCFF415CUC/@@download/ENCFF415CUC.bigWig GRCh38 released missing genetic modification characterization ENCFF465UUK bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF774RUP, ENCFF780MVW, ENCFF892LAS 7244276 ENCODE Processing Pipeline b8729c74c23dbe3c71f8a3245a8bb84e https://www.encodeproject.org/files/ENCFF465UUK/@@download/ENCFF465UUK.bed.gz GRCh38 released missing genetic modification characterization ENCFF881KZL bigBed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF465UUK 12823034 ENCODE Processing Pipeline 93a276180a4b60a115ae0b863c973654 https://www.encodeproject.org/files/ENCFF881KZL/@@download/ENCFF881KZL.bigBed GRCh38 released missing genetic modification characterization ENCFF358DZO bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774RUP, ENCFF780MVW 7090603 ENCODE Processing Pipeline 381401889a95ca93e2cb2d9b36fe45c2 https://www.encodeproject.org/files/ENCFF358DZO/@@download/ENCFF358DZO.bed.gz GRCh38 released missing genetic modification characterization ENCFF142JBX bed narrowPeak conservative idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF358DZO, ENCFF360VMU, ENCFF419RSJ, ENCFF465UUK 785453 ENCODE Processing Pipeline e57eba8feec67bda3cc33301d2309710 https://www.encodeproject.org/files/ENCFF142JBX/@@download/ENCFF142JBX.bed.gz GRCh38 released missing genetic modification characterization ENCFF327MSC bigBed narrowPeak optimal idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF236XAZ 1691335 ENCODE Processing Pipeline 5e01c5fb027e7b9353b967c043ff3ff3 https://www.encodeproject.org/files/ENCFF327MSC/@@download/ENCFF327MSC.bigBed GRCh38 released missing genetic modification characterization ENCFF360VMU bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF780MVW, ENCFF892LAS 7143006 ENCODE Processing Pipeline ebbd9b80b1f89bd1467c700a2e1c4928 https://www.encodeproject.org/files/ENCFF360VMU/@@download/ENCFF360VMU.bed.gz GRCh38 released missing genetic modification characterization ENCFF078CZP bigBed narrowPeak conservative idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF142JBX 1603738 ENCODE Processing Pipeline 39c0cb1efcf9802a3a722bc967a1a44b https://www.encodeproject.org/files/ENCFF078CZP/@@download/ENCFF078CZP.bigBed GRCh38 released missing genetic modification characterization ENCFF253QQP bigBed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF360VMU 12978685 ENCODE Processing Pipeline 2cf0fb643f72b3a47769fdc4d643a72b https://www.encodeproject.org/files/ENCFF253QQP/@@download/ENCFF253QQP.bigBed GRCh38 released missing genetic modification characterization ENCFF652IOK bigBed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF358DZO 12881503 ENCODE Processing Pipeline 658ab4d5f03f8780418f068a47358004 https://www.encodeproject.org/files/ENCFF652IOK/@@download/ENCFF652IOK.bigBed GRCh38 released missing genetic modification characterization ENCFF236XAZ bed narrowPeak optimal idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF358DZO, ENCFF360VMU, ENCFF419RSJ, ENCFF465UUK 837317 ENCODE Processing Pipeline a2c7a380e59e2af725332014de4ffe83 https://www.encodeproject.org/files/ENCFF236XAZ/@@download/ENCFF236XAZ.bed.gz GRCh38 released missing genetic modification characterization ENCFF972JLW bigWig fold change over control ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF465GPJ, ENCFF774NMX 1330971408 ENCODE Processing Pipeline e64228f492270b4d14d95ef68e966567 https://www.encodeproject.org/files/ENCFF972JLW/@@download/ENCFF972JLW.bigWig hg19 released missing genetic modification characterization ENCFF920QBL bigWig fold change over control ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774NMX, ENCFF800DAY 1182758778 ENCODE Processing Pipeline ad034f262ef55e82d1dbd879576e3b87 https://www.encodeproject.org/files/ENCFF920QBL/@@download/ENCFF920QBL.bigWig hg19 released missing genetic modification characterization ENCFF694DLB bigBed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF621JGB 12883159 ENCODE Processing Pipeline 88aabf635fa8a004c82194e92d88f8a4 https://www.encodeproject.org/files/ENCFF694DLB/@@download/ENCFF694DLB.bigBed hg19 released missing genetic modification characterization ENCFF884CMO bed narrowPeak conservative idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF077HXE, ENCFF234YBT, ENCFF621JGB 794386 ENCODE Processing Pipeline e5bf0fc333d9d3474291eda0297be8bb https://www.encodeproject.org/files/ENCFF884CMO/@@download/ENCFF884CMO.bed.gz hg19 released missing genetic modification characterization ENCFF234YBT bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF465GPJ, ENCFF774NMX 7114931 ENCODE Processing Pipeline 79d418b70086dce5c7e765c1e2642f73 https://www.encodeproject.org/files/ENCFF234YBT/@@download/ENCFF234YBT.bed.gz hg19 released missing genetic modification characterization ENCFF621JGB bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774NMX, ENCFF800DAY 7098197 ENCODE Processing Pipeline 1ba4b01a7a46ffd49b60d3c82a7a8f57 https://www.encodeproject.org/files/ENCFF621JGB/@@download/ENCFF621JGB.bed.gz hg19 released missing genetic modification characterization ENCFF800QOA bigBed narrowPeak conservative idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF884CMO 1613721 ENCODE Processing Pipeline bd80cf3d60eca9961c95e99132ad331c https://www.encodeproject.org/files/ENCFF800QOA/@@download/ENCFF800QOA.bigBed hg19 released missing genetic modification characterization ENCFF490KQS bigWig signal p-value ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF465GPJ, ENCFF774NMX 1235830357 ENCODE Processing Pipeline 2be3174a450d181382bb5c13e8529c7a https://www.encodeproject.org/files/ENCFF490KQS/@@download/ENCFF490KQS.bigWig hg19 released missing genetic modification characterization ENCFF687CBZ bigBed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF234YBT 12929703 ENCODE Processing Pipeline a70881b3aa0e2821d71c8787fd91f52d https://www.encodeproject.org/files/ENCFF687CBZ/@@download/ENCFF687CBZ.bigBed hg19 released missing genetic modification characterization ENCFF232KAH bed narrowPeak optimal idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF001TDO, ENCFF077HXE, ENCFF234YBT, ENCFF621JGB 847500 ENCODE Processing Pipeline c7510df2956ffb6634c5f8adaa79d8ec https://www.encodeproject.org/files/ENCFF232KAH/@@download/ENCFF232KAH.bed.gz hg19 released missing genetic modification characterization ENCFF077HXE bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF465GPJ, ENCFF774NMX, ENCFF800DAY 7263586 ENCODE Processing Pipeline 649e7a6167a0693ae434010d6aea2ae9 https://www.encodeproject.org/files/ENCFF077HXE/@@download/ENCFF077HXE.bed.gz hg19 released missing genetic modification characterization ENCFF951CQG bigBed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF077HXE 12841351 ENCODE Processing Pipeline b4446ffa3efe6a247a32ca6949bcb995 https://www.encodeproject.org/files/ENCFF951CQG/@@download/ENCFF951CQG.bigBed hg19 released missing genetic modification characterization ENCFF193SNN bigBed narrowPeak optimal idr thresholded peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1, 2 ENCFF232KAH 1704465 ENCODE Processing Pipeline dafd04d07f02350fdaf494b1abe5673d https://www.encodeproject.org/files/ENCFF193SNN/@@download/ENCFF193SNN.bigBed hg19 released missing genetic modification characterization ENCFF695KCX bigWig signal p-value ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774NMX, ENCFF800DAY 1136984736 ENCODE Processing Pipeline e736b814259c07d8c1d1b3d93dd4ad4c https://www.encodeproject.org/files/ENCFF695KCX/@@download/ENCFF695KCX.bigWig hg19 released missing genetic modification characterization ENCFF000XDB bam alignments ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XDO 933279277 Peggy Farnham, USC c5394a36469626f06f06187d4ae9b175 https://www.encodeproject.org/files/ENCFF000XDB/@@download/ENCFF000XDB.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDC bam alignments ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XDP 1075249347 Peggy Farnham, USC 1102aba1aa12ea60b5743c08c1a15bc1 https://www.encodeproject.org/files/ENCFF000XDC/@@download/ENCFF000XDC.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDD bigBed narrowPeak peaks ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIG 117001 Peggy Farnham, USC 37d76d628a42c3fbf778b3839a805b1a https://www.encodeproject.org/files/ENCFF000XDD/@@download/ENCFF000XDD.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDE bigWig signal ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 391885881 Peggy Farnham, USC e330a960b919f0979f68e3b080790c41 https://www.encodeproject.org/files/ENCFF000XDE/@@download/ENCFF000XDE.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XDO fastq reads ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 746202955 Peggy Farnham, USC 82456ebbc0da96d60f4b7a9c3b8745aa https://www.encodeproject.org/files/ENCFF000XDO/@@download/ENCFF000XDO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDP fastq reads ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 904588114 Peggy Farnham, USC 493a93d8319e57be996bb3dac3ec7fd9 https://www.encodeproject.org/files/ENCFF000XDP/@@download/ENCFF000XDP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VIG bed narrowPeak peaks ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 27134 Peggy Farnham, USC 1185dfc47054aa23bb66c7c43141647f https://www.encodeproject.org/files/ENCFF001VIG/@@download/ENCFF001VIG.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CSH bed narrowPeak optimal idr thresholded peaks ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 72250 ENCODE Consortium Analysis Working Group b0ee76b4bd597ffc28d3fbb455b4bca8 https://www.encodeproject.org/files/ENCFF002CSH/@@download/ENCFF002CSH.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF505MHH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSH 288855 ENCODE Consortium 453e10df11e008bf66375dddd65da117 https://www.encodeproject.org/files/ENCFF505MHH/@@download/ENCFF505MHH.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000NBT bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NCD 1005317542 Richard Myers, HAIB 405f4310668fa12422690bebab505b2a https://www.encodeproject.org/files/ENCFF000NBT/@@download/ENCFF000NBT.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBU bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NCF 1015862954 Richard Myers, HAIB b924529f1c78d31f1cf86490a198dd54 https://www.encodeproject.org/files/ENCFF000NBU/@@download/ENCFF000NBU.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBV bigBed broadPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TSR 252537 Richard Myers, HAIB b69a57598189c12840b012b6fe74fd23 https://www.encodeproject.org/files/ENCFF000NBV/@@download/ENCFF000NBV.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBW bigBed broadPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TSS 360077 Richard Myers, HAIB c35f19bd671bad7fc0dcb1f8f5de90c7 https://www.encodeproject.org/files/ENCFF000NBW/@@download/ENCFF000NBW.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBY bigWig raw signal ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 17361779 Richard Myers, HAIB 6584d6ed296317d36570bcfc9b4cef83 https://www.encodeproject.org/files/ENCFF000NBY/@@download/ENCFF000NBY.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000NCA bigWig raw signal ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 24640105 Richard Myers, HAIB bed212d8a63a91697c09b50e56d173e1 https://www.encodeproject.org/files/ENCFF000NCA/@@download/ENCFF000NCA.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000NCD fastq reads ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1047820956 Richard Myers, HAIB 703985123943d5f4f82110fae04632d1 https://www.encodeproject.org/files/ENCFF000NCD/@@download/ENCFF000NCD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NCO/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NCF fastq reads ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1123154303 Richard Myers, HAIB 9fc72a1ab67b3aa0de71898f45daeb5e https://www.encodeproject.org/files/ENCFF000NCF/@@download/ENCFF000NCF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NCL/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001TSR bed broadPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 100652 Richard Myers, HAIB 58eeab04ab318d1b9db4c30936b242ea https://www.encodeproject.org/files/ENCFF001TSR/@@download/ENCFF001TSR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001TSS bed broadPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 175361 Richard Myers, HAIB a46f07e75f37f3300dda587b541b3209 https://www.encodeproject.org/files/ENCFF001TSS/@@download/ENCFF001TSS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CFS bed narrowPeak optimal idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 263337 ENCODE Consortium Analysis Working Group 219d9f444edeb30973949904d40d519e https://www.encodeproject.org/files/ENCFF002CFS/@@download/ENCFF002CFS.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF269VZG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CFS 750418 ENCODE Consortium 564f7e148cda4c7fd60853dc456036eb https://www.encodeproject.org/files/ENCFF269VZG/@@download/ENCFF269VZG.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF512MUR bam unfiltered alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCF, ENCFF643CGH 1422358774 ENCODE Processing Pipeline 969a631f85872aebcd0601fab09fe0e8 https://www.encodeproject.org/files/ENCFF512MUR/@@download/ENCFF512MUR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF690ZBC bam unfiltered alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCD, ENCFF643CGH 1342312317 ENCODE Processing Pipeline c1ce004227c2e45e82936583c95c3291 https://www.encodeproject.org/files/ENCFF690ZBC/@@download/ENCFF690ZBC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF160JFP bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCF, ENCFF643CGH 769068933 ENCODE Processing Pipeline f51a691bffa5ffa14f3afbd31031e174 https://www.encodeproject.org/files/ENCFF160JFP/@@download/ENCFF160JFP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296AWB bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCD, ENCFF643CGH 775177527 ENCODE Processing Pipeline c83c15cfa6850c98c340cd6e912eb56c https://www.encodeproject.org/files/ENCFF296AWB/@@download/ENCFF296AWB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF687AHO bam unfiltered alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCF, ENCFF807MUK 1416119631 ENCODE Processing Pipeline 598141dedacd3ad1757e752b156530c1 https://www.encodeproject.org/files/ENCFF687AHO/@@download/ENCFF687AHO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548VNJ bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCD, ENCFF807MUK 775366247 ENCODE Processing Pipeline 7dc474927d0f3bf341e291fa9b138697 https://www.encodeproject.org/files/ENCFF548VNJ/@@download/ENCFF548VNJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF435WGN bam unfiltered alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCD, ENCFF807MUK 1336841398 ENCODE Processing Pipeline a2ff9d183261709f720b781e91abd9ff https://www.encodeproject.org/files/ENCFF435WGN/@@download/ENCFF435WGN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285CTQ bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCF, ENCFF807MUK 769143379 ENCODE Processing Pipeline e758f7080b78ee4cb10231f00f46fd0a https://www.encodeproject.org/files/ENCFF285CTQ/@@download/ENCFF285CTQ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF070ZVN bigWig signal p-value ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF160JFP, ENCFF440RZX 387233533 ENCODE Processing Pipeline ca33838bfd453251f74a3f60339f7dbf https://www.encodeproject.org/files/ENCFF070ZVN/@@download/ENCFF070ZVN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF399LLW bigWig signal p-value ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF296AWB, ENCFF440RZX 578865049 ENCODE Processing Pipeline 1a59fe4c7f939bd4d5458f3fb9204d86 https://www.encodeproject.org/files/ENCFF399LLW/@@download/ENCFF399LLW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF145KZZ bigWig fold change over control ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF296AWB, ENCFF440RZX 384441135 ENCODE Processing Pipeline 1efce6d3ee99f198b82d44f1189e82e0 https://www.encodeproject.org/files/ENCFF145KZZ/@@download/ENCFF145KZZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF827JJC bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF160JFP, ENCFF296AWB, ENCFF440RZX 5588567 ENCODE Processing Pipeline 05dc9ff9e4bcb380be13e337a57fff8b https://www.encodeproject.org/files/ENCFF827JJC/@@download/ENCFF827JJC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF556FWG bigWig signal p-value ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF160JFP, ENCFF296AWB, ENCFF440RZX 672260863 ENCODE Processing Pipeline b069202d84a1be419302698c0a9f4c99 https://www.encodeproject.org/files/ENCFF556FWG/@@download/ENCFF556FWG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF591NAK bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF160JFP, ENCFF440RZX 4169677 ENCODE Processing Pipeline 1b2bd253755d2f504c4a010af4fbfd5d https://www.encodeproject.org/files/ENCFF591NAK/@@download/ENCFF591NAK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF890RIW bigWig fold change over control ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF160JFP, ENCFF440RZX 295541021 ENCODE Processing Pipeline f1d1c750a4f64eb8d95799ee06040981 https://www.encodeproject.org/files/ENCFF890RIW/@@download/ENCFF890RIW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548YOD bigWig fold change over control ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF160JFP, ENCFF296AWB, ENCFF440RZX 630099094 ENCODE Processing Pipeline bf990c7738e00ab5b822f8e25a79035c https://www.encodeproject.org/files/ENCFF548YOD/@@download/ENCFF548YOD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF948WVM bed narrowPeak conservative idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF431LJN, ENCFF591NAK, ENCFF827JJC 195574 ENCODE Processing Pipeline ad7cea63a2147bd1e9f0c9ee5951604a https://www.encodeproject.org/files/ENCFF948WVM/@@download/ENCFF948WVM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF431LJN bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF296AWB, ENCFF440RZX 4813437 ENCODE Processing Pipeline e27d66b65e3c7753d8563855e00a2758 https://www.encodeproject.org/files/ENCFF431LJN/@@download/ENCFF431LJN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF873WCD bigBed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF591NAK 10496305 ENCODE Processing Pipeline 84c8c2e19e7e3993024b0250c771c84c https://www.encodeproject.org/files/ENCFF873WCD/@@download/ENCFF873WCD.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF810HLX bigBed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF431LJN 11114608 ENCODE Processing Pipeline fd121cf6e2d7471647a3f7b406e15178 https://www.encodeproject.org/files/ENCFF810HLX/@@download/ENCFF810HLX.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF166EHB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF714KXI 448649 ENCODE Processing Pipeline e2ad3ee13a7f1280b16026e9c97e9690 https://www.encodeproject.org/files/ENCFF166EHB/@@download/ENCFF166EHB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF431XFB bigBed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF827JJC 11413117 ENCODE Processing Pipeline 14a2e084eb18266565d0f27ecaf40e96 https://www.encodeproject.org/files/ENCFF431XFB/@@download/ENCFF431XFB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF195GIF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF948WVM 402183 ENCODE Processing Pipeline 9cbeca480150edf89a374c167b1bdd00 https://www.encodeproject.org/files/ENCFF195GIF/@@download/ENCFF195GIF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF714KXI bed narrowPeak optimal idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF431LJN, ENCFF591NAK, ENCFF827JJC 227295 ENCODE Processing Pipeline d1451893dd477d427232f89d97b96ce4 https://www.encodeproject.org/files/ENCFF714KXI/@@download/ENCFF714KXI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527THL bigWig signal p-value ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 492349678 ENCODE Processing Pipeline b877537fc0e6241e3a273b5b05a2c318 https://www.encodeproject.org/files/ENCFF527THL/@@download/ENCFF527THL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF745JPV bigWig fold change over control ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 387149794 ENCODE Processing Pipeline d34b4f0e0d0be9b8f74943d9122045a9 https://www.encodeproject.org/files/ENCFF745JPV/@@download/ENCFF745JPV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF428XHD bigWig signal p-value ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285CTQ, ENCFF492RDK 334204771 ENCODE Processing Pipeline 6da99f19a4ef488405c373e1eda73033 https://www.encodeproject.org/files/ENCFF428XHD/@@download/ENCFF428XHD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF487IDM bigWig fold change over control ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285CTQ, ENCFF492RDK 288990776 ENCODE Processing Pipeline ef0f58a2dd65a171e725b86b517267a9 https://www.encodeproject.org/files/ENCFF487IDM/@@download/ENCFF487IDM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF012IVJ bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285CTQ, ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 5590573 ENCODE Processing Pipeline 0fb5a8cc8404b8a29f99ad8c362f3349 https://www.encodeproject.org/files/ENCFF012IVJ/@@download/ENCFF012IVJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF221LAR bigBed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF055UFA 10492891 ENCODE Processing Pipeline faf2052339aeba8725f9729fd26c3496 https://www.encodeproject.org/files/ENCFF221LAR/@@download/ENCFF221LAR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF755JEB bigWig signal p-value ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285CTQ, ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 671091687 ENCODE Processing Pipeline b9e7d264a643e86d4ffb3c0f6e19cfe3 https://www.encodeproject.org/files/ENCFF755JEB/@@download/ENCFF755JEB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF457IQL bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 4816631 ENCODE Processing Pipeline 16d273b1b7fe5772fdaed5104b46427a https://www.encodeproject.org/files/ENCFF457IQL/@@download/ENCFF457IQL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF055UFA bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285CTQ, ENCFF492RDK 4168468 ENCODE Processing Pipeline 0615a01d2769911bebbc5591f4e1beac https://www.encodeproject.org/files/ENCFF055UFA/@@download/ENCFF055UFA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF073VCQ bed narrowPeak conservative idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF012IVJ, ENCFF055UFA, ENCFF457IQL 195423 ENCODE Processing Pipeline 836a7dc36dbb39f99d7f7ed406431ea2 https://www.encodeproject.org/files/ENCFF073VCQ/@@download/ENCFF073VCQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF793GYC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF073VCQ 402095 ENCODE Processing Pipeline 31edee171ad1446765cb68c22a6cd26c https://www.encodeproject.org/files/ENCFF793GYC/@@download/ENCFF793GYC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364JPK bigBed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF457IQL 11110812 ENCODE Processing Pipeline 21ba1663bcf538a1ca6ac59dfd7907c8 https://www.encodeproject.org/files/ENCFF364JPK/@@download/ENCFF364JPK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF535TUN bigBed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012IVJ 11408877 ENCODE Processing Pipeline 0763f1ab62fc5df0ec353120b932cf8b https://www.encodeproject.org/files/ENCFF535TUN/@@download/ENCFF535TUN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF806RPV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF913WFD 446708 ENCODE Processing Pipeline b6a2e387784a6ea3f5c3bf2ee156cffe https://www.encodeproject.org/files/ENCFF806RPV/@@download/ENCFF806RPV.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF155DVB bigWig fold change over control ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285CTQ, ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 633372032 ENCODE Processing Pipeline c480c863124f4170c6f64f353ed08dac https://www.encodeproject.org/files/ENCFF155DVB/@@download/ENCFF155DVB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF913WFD bed narrowPeak optimal idr thresholded peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF012IVJ, ENCFF055UFA, ENCFF457IQL 226305 ENCODE Processing Pipeline 7c2d8a1c2786b19864e7a6e535d292ce https://www.encodeproject.org/files/ENCFF913WFD/@@download/ENCFF913WFD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF158PZK fastq reads ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF748ZYI 1501762110 Richard Myers, HAIB 85c73a620dc82c8180ee44763e3de9a2 https://www.encodeproject.org/files/ENCFF158PZK/@@download/ENCFF158PZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF760ETA/ released antibody characterized with exemption experiment not submitted to GEO ENCFF748ZYI fastq reads ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF158PZK 1529256930 Richard Myers, HAIB 52fbb2d08d9fe22d08f733b2a1cd5575 https://www.encodeproject.org/files/ENCFF748ZYI/@@download/ENCFF748ZYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF725DAD/ released antibody characterized with exemption experiment not submitted to GEO ENCFF938FBH bam unfiltered alignments ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF158PZK, ENCFF748ZYI, ENCFF807MUK 3420792907 ENCODE Processing Pipeline 088288000ab2f277f8a9da9f6ef0eb96 https://www.encodeproject.org/files/ENCFF938FBH/@@download/ENCFF938FBH.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF443EQP bam unfiltered alignments ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF158PZK, ENCFF643CGH, ENCFF748ZYI 3427045344 ENCODE Processing Pipeline 509e9608d819ece84434a5d1bd9cf27a https://www.encodeproject.org/files/ENCFF443EQP/@@download/ENCFF443EQP.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF969JNV bam alignments ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF158PZK, ENCFF748ZYI, ENCFF807MUK 2729992663 ENCODE Processing Pipeline a3e4ca6252f23c3edead1410867b0343 https://www.encodeproject.org/files/ENCFF969JNV/@@download/ENCFF969JNV.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF431SFJ bam alignments ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF158PZK, ENCFF643CGH, ENCFF748ZYI 2730326496 ENCODE Processing Pipeline 4a14041aaddedcb6663ddc960e769ab8 https://www.encodeproject.org/files/ENCFF431SFJ/@@download/ENCFF431SFJ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF931ZQI bigWig signal p-value ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF272GLK, ENCFF431SFJ 1625445615 ENCODE Processing Pipeline 7ff5e5648bc81af1ceaf623075db7e17 https://www.encodeproject.org/files/ENCFF931ZQI/@@download/ENCFF931ZQI.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF082LUY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF079TMN, ENCFF419RSJ 850321 ENCODE Processing Pipeline 36b5508745278c12377923a78f9ac2c9 https://www.encodeproject.org/files/ENCFF082LUY/@@download/ENCFF082LUY.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF102EXD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF082LUY 1610999 ENCODE Processing Pipeline 35869c35f2234f5ced21a6d78d430e57 https://www.encodeproject.org/files/ENCFF102EXD/@@download/ENCFF102EXD.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF463TDC bigWig fold change over control ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF272GLK, ENCFF431SFJ 1197070918 ENCODE Processing Pipeline 8a75439a96262e266d325ee387be9d0f https://www.encodeproject.org/files/ENCFF463TDC/@@download/ENCFF463TDC.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF079TMN bed narrowPeak peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF272GLK, ENCFF431SFJ 7081393 ENCODE Processing Pipeline 0288d820c23edc0f1f291e0a292c3714 https://www.encodeproject.org/files/ENCFF079TMN/@@download/ENCFF079TMN.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF415YIB bigBed narrowPeak peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF079TMN 13395015 ENCODE Processing Pipeline 765d2325455e889daf1e9b24778df657 https://www.encodeproject.org/files/ENCFF415YIB/@@download/ENCFF415YIB.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF295CLS bigWig signal p-value ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF209HOQ, ENCFF969JNV 1433484386 ENCODE Processing Pipeline 699f31c6518fb0a5153d8d69eaed73a3 https://www.encodeproject.org/files/ENCFF295CLS/@@download/ENCFF295CLS.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF867HCH bigWig fold change over control ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF209HOQ, ENCFF969JNV 1199369466 ENCODE Processing Pipeline 866f19819f0a478908852fdf74cfa865 https://www.encodeproject.org/files/ENCFF867HCH/@@download/ENCFF867HCH.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF063RHI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF451GFT 1591388 ENCODE Processing Pipeline d593877dab0e0783eae9d6e91fd5ace3 https://www.encodeproject.org/files/ENCFF063RHI/@@download/ENCFF063RHI.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF478WOV bed narrowPeak peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF209HOQ, ENCFF969JNV 7061969 ENCODE Processing Pipeline bcd90b064f2ab7ec6323906c6d492e75 https://www.encodeproject.org/files/ENCFF478WOV/@@download/ENCFF478WOV.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF777JZP bigBed narrowPeak peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF478WOV 13381516 ENCODE Processing Pipeline 3d78756b659cd0b320a1ae90e59f3769 https://www.encodeproject.org/files/ENCFF777JZP/@@download/ENCFF777JZP.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF451GFT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF478WOV 835494 ENCODE Processing Pipeline ce5d1c1cbc5d8434c3e1b505d7af8ebe https://www.encodeproject.org/files/ENCFF451GFT/@@download/ENCFF451GFT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000XZB bam alignments ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XZK 396955426 Peggy Farnham, USC 6dd2df33c6f167e3305b679a3b465b11 https://www.encodeproject.org/files/ENCFF000XZB/@@download/ENCFF000XZB.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZC bam alignments ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XZJ 744548030 Peggy Farnham, USC c5a996871eaf0f5989b4b721154a8bc4 https://www.encodeproject.org/files/ENCFF000XZC/@@download/ENCFF000XZC.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZD bigBed narrowPeak peaks ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLE 136378 Peggy Farnham, USC cd859b5297574dd3fe6aa98bf5ea12c8 https://www.encodeproject.org/files/ENCFF000XZD/@@download/ENCFF000XZD.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZE bigWig signal ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 355787767 Peggy Farnham, USC de3c49510834a2ef3ad2d2b52697b3f4 https://www.encodeproject.org/files/ENCFF000XZE/@@download/ENCFF000XZE.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XZJ fastq reads ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 567990483 Peggy Farnham, USC 9e772f81822599a22253e3abf7e56a7d https://www.encodeproject.org/files/ENCFF000XZJ/@@download/ENCFF000XZJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZK fastq reads ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 314844148 Peggy Farnham, USC 1002a7136afacb93381ab1700f1ff101 https://www.encodeproject.org/files/ENCFF000XZK/@@download/ENCFF000XZK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTE/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VLE bed narrowPeak peaks ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 36559 Peggy Farnham, USC ba36c7bacb35c0dfa9bffe78ae4c0076 https://www.encodeproject.org/files/ENCFF001VLE/@@download/ENCFF001VLE.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CUY bed narrowPeak optimal idr thresholded peaks ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 68743 ENCODE Consortium Analysis Working Group 1341c254fe193f8e1b74e523a83b53fb https://www.encodeproject.org/files/ENCFF002CUY/@@download/ENCFF002CUY.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF722IOT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUY 197143 ENCODE Consortium 1de16de45760b7007f8b2bde3d0d87a9 https://www.encodeproject.org/files/ENCFF722IOT/@@download/ENCFF722IOT.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000YTD bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 204042535 Michael Snyder, Stanford ae4df4b2a5057316b474e48dd999ec26 https://www.encodeproject.org/files/ENCFF000YTD/@@download/ENCFF000YTD.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YTE bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VNS 2088971 Michael Snyder, Stanford b5c72f89bb862bd0e88c05cea44a1793 https://www.encodeproject.org/files/ENCFF000YTE/@@download/ENCFF000YTE.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YTF fastq reads ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 858375495 Michael Snyder, Stanford 3ede5a75cbedede19695b0c5a62ce1d4 https://www.encodeproject.org/files/ENCFF000YTF/@@download/ENCFF000YTF.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YTH fastq reads ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 331571902 Michael Snyder, Stanford cf9627611fc2da39414117f0ad4b8459 https://www.encodeproject.org/files/ENCFF000YTH/@@download/ENCFF000YTH.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YTJ bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 1 493990154 Michael Snyder, Stanford 1428617ec0bed80e586c1a3eee7899ae https://www.encodeproject.org/files/ENCFF000YTJ/@@download/ENCFF000YTJ.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YTK bigWig signal ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 126739690 Michael Snyder, Stanford 434c8e276e939fdb1935e8237dda7677 https://www.encodeproject.org/files/ENCFF000YTK/@@download/ENCFF000YTK.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001VNS bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 830561 Michael Snyder, Stanford 53d37128b9036301c7fc2b74ee4bf7d2 https://www.encodeproject.org/files/ENCFF001VNS/@@download/ENCFF001VNS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CXD bed narrowPeak optimal idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 633651 ENCODE Consortium Analysis Working Group 13a3c429f910b853f14a8fa2de029ec9 https://www.encodeproject.org/files/ENCFF002CXD/@@download/ENCFF002CXD.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF067FGF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CXD 1461891 ENCODE Consortium 1a4ba9ac6c2169540d3cfc0906289564 https://www.encodeproject.org/files/ENCFF067FGF/@@download/ENCFF067FGF.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF844LIK bam unfiltered alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YTH, ENCFF643CGH 383305076 ENCODE Processing Pipeline 15db2ea46be12e9241aa7b7a0bdca2b6 https://www.encodeproject.org/files/ENCFF844LIK/@@download/ENCFF844LIK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF635HIS bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YTH, ENCFF643CGH 277429956 ENCODE Processing Pipeline af0eecd33dc87a6a4e214b84477d829c https://www.encodeproject.org/files/ENCFF635HIS/@@download/ENCFF635HIS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF083GLO bam unfiltered alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YTF, ENCFF643CGH 963544988 ENCODE Processing Pipeline de0687c9073cb39446ce67a2bd5a476e https://www.encodeproject.org/files/ENCFF083GLO/@@download/ENCFF083GLO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF360QBV bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YTF, ENCFF643CGH 688282268 ENCODE Processing Pipeline 23f5992049bd0ba05f6dab41ab1348f6 https://www.encodeproject.org/files/ENCFF360QBV/@@download/ENCFF360QBV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF610XAJ bam unfiltered alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YTF, ENCFF807MUK 960442685 ENCODE Processing Pipeline 9eb1e4d0fafd04a3751b7894c31e2aec https://www.encodeproject.org/files/ENCFF610XAJ/@@download/ENCFF610XAJ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF543CKI bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YTH, ENCFF807MUK 277724803 ENCODE Processing Pipeline 801af5973d0d6d3d34a97e45ebe8baff https://www.encodeproject.org/files/ENCFF543CKI/@@download/ENCFF543CKI.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF938QJA bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YTF, ENCFF807MUK 688899678 ENCODE Processing Pipeline b1893be60d425d5fea9970831aadb8a2 https://www.encodeproject.org/files/ENCFF938QJA/@@download/ENCFF938QJA.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF172YQZ bam unfiltered alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YTH, ENCFF807MUK 382167021 ENCODE Processing Pipeline 8179862bddf4848439d48eb70c952d7d https://www.encodeproject.org/files/ENCFF172YQZ/@@download/ENCFF172YQZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF126XVR bigWig signal p-value ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF360QBV 540246891 ENCODE Processing Pipeline d1a26912f88b7fa9e5213eacf9f73a40 https://www.encodeproject.org/files/ENCFF126XVR/@@download/ENCFF126XVR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF552UDY bigWig signal p-value ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF635HIS 364270137 ENCODE Processing Pipeline c9473a4942411bfa4e02e18953d71453 https://www.encodeproject.org/files/ENCFF552UDY/@@download/ENCFF552UDY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF412VKD bigWig signal p-value ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF360QBV, ENCFF635HIS 520377195 ENCODE Processing Pipeline 2515c2d6d30c9f3f1e5f18d12b6be85a https://www.encodeproject.org/files/ENCFF412VKD/@@download/ENCFF412VKD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF290DAI bigWig fold change over control ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF360QBV 338675585 ENCODE Processing Pipeline a6890fd1e2df07cbcf3de5a3a80da654 https://www.encodeproject.org/files/ENCFF290DAI/@@download/ENCFF290DAI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF114EOW bigWig fold change over control ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF635HIS 170269493 ENCODE Processing Pipeline bd01d6b5b86ee59e25b99680309bf291 https://www.encodeproject.org/files/ENCFF114EOW/@@download/ENCFF114EOW.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF796GHK bigWig fold change over control ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF360QBV, ENCFF635HIS 451440948 ENCODE Processing Pipeline 691e2700022017e6194b54ac6bce666d https://www.encodeproject.org/files/ENCFF796GHK/@@download/ENCFF796GHK.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF904QUW bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF360QBV 5509072 ENCODE Processing Pipeline 1db81d98be8d40323ddd69f3664c80f5 https://www.encodeproject.org/files/ENCFF904QUW/@@download/ENCFF904QUW.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF825YKX bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF635HIS 3547264 ENCODE Processing Pipeline 8dc0c4664be0be5875661174d99d52fe https://www.encodeproject.org/files/ENCFF825YKX/@@download/ENCFF825YKX.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF795AWI bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF360QBV, ENCFF635HIS 5850250 ENCODE Processing Pipeline 7fcce035ef6a6d48628090241f338d01 https://www.encodeproject.org/files/ENCFF795AWI/@@download/ENCFF795AWI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF618QJO bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF904QUW 12961858 ENCODE Processing Pipeline 8bbfeb8ae18eaf9ac2009627d83a95e8 https://www.encodeproject.org/files/ENCFF618QJO/@@download/ENCFF618QJO.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF730OEJ bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF825YKX 7665798 ENCODE Processing Pipeline 0d04c087a2bc3afd85c26f89cf6f6d8a https://www.encodeproject.org/files/ENCFF730OEJ/@@download/ENCFF730OEJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF481AOS bed narrowPeak conservative idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF795AWI, ENCFF825YKX, ENCFF904QUW 491554 ENCODE Processing Pipeline 0f610de1495c38eac42b5bf0496297c6 https://www.encodeproject.org/files/ENCFF481AOS/@@download/ENCFF481AOS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF778PTE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF618VMC 1226676 ENCODE Processing Pipeline 309c1d3df1d9e6060acbc2094d06c9ee https://www.encodeproject.org/files/ENCFF778PTE/@@download/ENCFF778PTE.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF498QNB bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF795AWI 13037500 ENCODE Processing Pipeline 238731870d6841039ee32fad5759272f https://www.encodeproject.org/files/ENCFF498QNB/@@download/ENCFF498QNB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF618VMC bed narrowPeak optimal idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF795AWI, ENCFF825YKX, ENCFF904QUW 625612 ENCODE Processing Pipeline f4682a1dc246195895e23f28ea0ee326 https://www.encodeproject.org/files/ENCFF618VMC/@@download/ENCFF618VMC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF466VUY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF481AOS 1026533 ENCODE Processing Pipeline 809209c3def74116604cc4d29039f447 https://www.encodeproject.org/files/ENCFF466VUY/@@download/ENCFF466VUY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF920JDG bigWig signal p-value ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF938QJA 469971486 ENCODE Processing Pipeline 360d266d7ba7e97bb62c24cb6690ec87 https://www.encodeproject.org/files/ENCFF920JDG/@@download/ENCFF920JDG.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF527QTX bigWig fold change over control ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF938QJA 339864757 ENCODE Processing Pipeline b5aa3439267b47586be5df5f1377890f https://www.encodeproject.org/files/ENCFF527QTX/@@download/ENCFF527QTX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF857RWI bigWig signal p-value ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF543CKI, ENCFF710NTS 407186719 ENCODE Processing Pipeline c805c6de0a1d0eb429620b3a04215ad1 https://www.encodeproject.org/files/ENCFF857RWI/@@download/ENCFF857RWI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF667YTQ bigWig signal p-value ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF543CKI, ENCFF710NTS, ENCFF938QJA 520679886 ENCODE Processing Pipeline 214c66f308c1c5c272d1bec07256014b https://www.encodeproject.org/files/ENCFF667YTQ/@@download/ENCFF667YTQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF934LWU bigWig fold change over control ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF543CKI, ENCFF710NTS 168953814 ENCODE Processing Pipeline 10d902f52b12dd2038f1e1873c36a30a https://www.encodeproject.org/files/ENCFF934LWU/@@download/ENCFF934LWU.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF996GBZ bigWig fold change over control ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF543CKI, ENCFF710NTS, ENCFF938QJA 452620152 ENCODE Processing Pipeline a08e7ed92457fd26b9c815575fd1995c https://www.encodeproject.org/files/ENCFF996GBZ/@@download/ENCFF996GBZ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF087MNA bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF938QJA 5449286 ENCODE Processing Pipeline 4556722732e40deaaae36ab6421f2466 https://www.encodeproject.org/files/ENCFF087MNA/@@download/ENCFF087MNA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF375JMY bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF543CKI, ENCFF710NTS 3550767 ENCODE Processing Pipeline 35c0d89b30c713f3d58bc4a0379b79fd https://www.encodeproject.org/files/ENCFF375JMY/@@download/ENCFF375JMY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF417GYT bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF543CKI, ENCFF710NTS, ENCFF938QJA 5862289 ENCODE Processing Pipeline 3476e1449056b1c577ed1bc48b44da15 https://www.encodeproject.org/files/ENCFF417GYT/@@download/ENCFF417GYT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF108GKS bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF087MNA 12880045 ENCODE Processing Pipeline 1390bc82acde48957a42131de5e8fae5 https://www.encodeproject.org/files/ENCFF108GKS/@@download/ENCFF108GKS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF799RHR bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375JMY 7676801 ENCODE Processing Pipeline 056265f53973e6b0736db9f072928e28 https://www.encodeproject.org/files/ENCFF799RHR/@@download/ENCFF799RHR.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF468KKD bigBed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF417GYT 13048355 ENCODE Processing Pipeline 67cfcd15584398e27b6e4360135b8bdd https://www.encodeproject.org/files/ENCFF468KKD/@@download/ENCFF468KKD.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF579DYT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF679HVZ 1027073 ENCODE Processing Pipeline 7351c909117411e902e002a6701f0f58 https://www.encodeproject.org/files/ENCFF579DYT/@@download/ENCFF579DYT.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF799HIG bed narrowPeak optimal idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF087MNA, ENCFF375JMY, ENCFF417GYT 624145 ENCODE Processing Pipeline 1b006f9e5ad27a54abb8329a52edd9d8 https://www.encodeproject.org/files/ENCFF799HIG/@@download/ENCFF799HIG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF679HVZ bed narrowPeak conservative idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF087MNA, ENCFF375JMY, ENCFF417GYT 491844 ENCODE Processing Pipeline a4a652a1b8c7d990f86c11800e00c02f https://www.encodeproject.org/files/ENCFF679HVZ/@@download/ENCFF679HVZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF353KFX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF799HIG 1223454 ENCODE Processing Pipeline 9cefb8185b9e23e6a4111c83b6ca0b91 https://www.encodeproject.org/files/ENCFF353KFX/@@download/ENCFF353KFX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF300ZLQ bam unfiltered alignments ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643OCA, ENCFF658ZTF, ENCFF807MUK 5563237040 ENCODE Processing Pipeline 0c61d3d957e9c0e3de3052914e75a08a https://www.encodeproject.org/files/ENCFF300ZLQ/@@download/ENCFF300ZLQ.bam hg19 released control low read depth, antibody characterized with exemption ENCFF643OCA fastq reads ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 1 ENCFF658ZTF 2473856751 Michael Snyder, Stanford 9ccc7ca54a26d2a4246a5b69c9278f02 SRA:SRR6213721 https://www.encodeproject.org/files/ENCFF643OCA/@@download/ENCFF643OCA.fastq.gz Illumina HiSeq 2000 /files/ENCFF326ENE/ released control low read depth, antibody characterized with exemption ENCFF658ZTF fastq reads ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 1 100 paired-ended 2 ENCFF643OCA 2543665475 Michael Snyder, Stanford 31471401d432c61582640f1214dd078e SRA:SRR6213721 https://www.encodeproject.org/files/ENCFF658ZTF/@@download/ENCFF658ZTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF851KCU/ released control low read depth, antibody characterized with exemption ENCFF209DDU bam alignments ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF643OCA, ENCFF658ZTF, ENCFF807MUK 4669879713 ENCODE Processing Pipeline 714a13af426dd852ce0be00811504acb https://www.encodeproject.org/files/ENCFF209DDU/@@download/ENCFF209DDU.bam hg19 released control low read depth, antibody characterized with exemption ENCFF981KMS bam unfiltered alignments ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF643OCA, ENCFF658ZTF 5572497612 ENCODE Processing Pipeline ada2fa0c23d29e741884313b01447664 https://www.encodeproject.org/files/ENCFF981KMS/@@download/ENCFF981KMS.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF374OTR bam alignments ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF643OCA, ENCFF658ZTF 4679640717 ENCODE Processing Pipeline d7e8ab0247da694c40a5e6c494e2724e https://www.encodeproject.org/files/ENCFF374OTR/@@download/ENCFF374OTR.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF145ENZ bigWig fold change over control ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF209DDU, ENCFF753TRQ 1006814865 ENCODE Processing Pipeline c737402050490cf9c98244c5b3b47fac https://www.encodeproject.org/files/ENCFF145ENZ/@@download/ENCFF145ENZ.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF740FSP bigBed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF108QPP 11430640 ENCODE Processing Pipeline a9926edbe2d14bac7d3dfc5824161927 https://www.encodeproject.org/files/ENCFF740FSP/@@download/ENCFF740FSP.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF560VSK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF001TDO, ENCFF108QPP 402112 ENCODE Processing Pipeline 7bd9d87f2254c348fb113f4f8fdba4c4 https://www.encodeproject.org/files/ENCFF560VSK/@@download/ENCFF560VSK.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF539GCT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF560VSK 732000 ENCODE Processing Pipeline 426451110943e63cca209b61b8dd48fe https://www.encodeproject.org/files/ENCFF539GCT/@@download/ENCFF539GCT.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF108QPP bed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF209DDU, ENCFF753TRQ 5531553 ENCODE Processing Pipeline fef8b2498bbc711a8215c421eb56bea4 https://www.encodeproject.org/files/ENCFF108QPP/@@download/ENCFF108QPP.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF088QXS bigWig signal p-value ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF209DDU, ENCFF753TRQ 920282749 ENCODE Processing Pipeline 38ed6ffa0fc92829bd79828ab8837ebf https://www.encodeproject.org/files/ENCFF088QXS/@@download/ENCFF088QXS.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF220VAH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419RSJ, ENCFF828ASK 407068 ENCODE Processing Pipeline cee8675be16e200f520046bd27e12d98 https://www.encodeproject.org/files/ENCFF220VAH/@@download/ENCFF220VAH.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF828ASK bed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF374OTR, ENCFF987UNO 5557994 ENCODE Processing Pipeline 7e162cfad5ea93c3d749d325d0f49a67 https://www.encodeproject.org/files/ENCFF828ASK/@@download/ENCFF828ASK.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF189ECF bigBed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF828ASK 11474265 ENCODE Processing Pipeline 6dc5905a289a7e536d678db069b16e04 https://www.encodeproject.org/files/ENCFF189ECF/@@download/ENCFF189ECF.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF362CBG bigWig signal p-value ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF374OTR, ENCFF987UNO 915918169 ENCODE Processing Pipeline ad8c85a9999f63ab84801e9bc9230613 https://www.encodeproject.org/files/ENCFF362CBG/@@download/ENCFF362CBG.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF684OBP bigWig fold change over control ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF374OTR, ENCFF987UNO 993130619 ENCODE Processing Pipeline b6e19ea3cb9170fad2388064183dd155 https://www.encodeproject.org/files/ENCFF684OBP/@@download/ENCFF684OBP.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF716PBW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF220VAH 742501 ENCODE Processing Pipeline 4e46a59b1919270ec5c82d0f459f0c78 https://www.encodeproject.org/files/ENCFF716PBW/@@download/ENCFF716PBW.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF000YKV bam alignments ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YMC 231692987 Sherman Weissman, Yale 205d55e12f2503bc870fbdae15e5ca16 https://www.encodeproject.org/files/ENCFF000YKV/@@download/ENCFF000YKV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YKW bam alignments ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YMB 219495782 Sherman Weissman, Yale 44bf30c30070e31cb3ab2a7691e8457c https://www.encodeproject.org/files/ENCFF000YKW/@@download/ENCFF000YKW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YKX bigBed narrowPeak peaks ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMV 240738 Sherman Weissman, Yale ae49a9ae8ae17802cec7b4bacf77a766 https://www.encodeproject.org/files/ENCFF000YKX/@@download/ENCFF000YKX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YKY bigWig signal ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 299593468 Sherman Weissman, Yale 3caa9f54f61e6869fc479d176606aa57 https://www.encodeproject.org/files/ENCFF000YKY/@@download/ENCFF000YKY.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YMB fastq reads ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 174254607 Sherman Weissman, Yale b40e033b7d0bba1374acb2e4ee0c7a5f https://www.encodeproject.org/files/ENCFF000YMB/@@download/ENCFF000YMB.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YMC fastq reads ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 180747037 Sherman Weissman, Yale 0ce17e223a1f56d01e48bc66a4eed849 https://www.encodeproject.org/files/ENCFF000YMC/@@download/ENCFF000YMC.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VMV bed narrowPeak peaks ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 79114 Sherman Weissman, Yale 17c3632f80445408b56fef214358cd6a https://www.encodeproject.org/files/ENCFF001VMV/@@download/ENCFF001VMV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CWI bed narrowPeak optimal idr thresholded peaks ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 100566 ENCODE Consortium Analysis Working Group dc7b2f11aa6ce545fdba1c08dc21c233 https://www.encodeproject.org/files/ENCFF002CWI/@@download/ENCFF002CWI.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF004EXR bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWI 253307 ENCODE Consortium a0b84bf443f60ec40235bd53104daaf0 https://www.encodeproject.org/files/ENCFF004EXR/@@download/ENCFF004EXR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF577YLD fastq reads ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF414MWJ 2226391573 Richard Myers, HAIB 7e474d394c79209ec046c6fdcce50b35 SRA:SRR6213875 https://www.encodeproject.org/files/ENCFF577YLD/@@download/ENCFF577YLD.fastq.gz Illumina HiSeq 2000 /files/ENCFF636HND/ released antibody characterized with exemption missing control alignments ENCFF414MWJ fastq reads ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF577YLD 2363589463 Richard Myers, HAIB 4c7e4e403ed0b0c1f818bd88a65f3a47 SRA:SRR6213875 https://www.encodeproject.org/files/ENCFF414MWJ/@@download/ENCFF414MWJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF049HLF/ released antibody characterized with exemption missing control alignments ENCFF669YZE bam unfiltered alignments ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF414MWJ, ENCFF577YLD, ENCFF807MUK 5563070611 ENCODE Processing Pipeline ba27fe2760cb8b28649f8d0f09ea3096 https://www.encodeproject.org/files/ENCFF669YZE/@@download/ENCFF669YZE.bam hg19 released antibody characterized with exemption missing control alignments ENCFF752AIU bam unfiltered alignments ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF414MWJ, ENCFF577YLD, ENCFF643CGH 5588496754 ENCODE Processing Pipeline f2dbe8456f2c4e0e3a55e3188ef2c4ab https://www.encodeproject.org/files/ENCFF752AIU/@@download/ENCFF752AIU.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF793GQM bam alignments ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF414MWJ, ENCFF577YLD, ENCFF643CGH 4034058403 ENCODE Processing Pipeline 4749459c860ae1511e05b5b9ecbbe7ed https://www.encodeproject.org/files/ENCFF793GQM/@@download/ENCFF793GQM.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF585RLR bam alignments ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF414MWJ, ENCFF577YLD, ENCFF807MUK 4030434037 ENCODE Processing Pipeline 40ce4a103aef46394eac750087a01a43 https://www.encodeproject.org/files/ENCFF585RLR/@@download/ENCFF585RLR.bam hg19 released antibody characterized with exemption missing control alignments ENCFF471DUA bigBed narrowPeak peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF784LSG 11843371 ENCODE Processing Pipeline 7ec7d31d75cf106a61f32645cdda7407 https://www.encodeproject.org/files/ENCFF471DUA/@@download/ENCFF471DUA.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF831ORZ bigWig signal p-value ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF793GQM 1260468518 ENCODE Processing Pipeline c73b1a58eb9a7260d77d878e13a43158 https://www.encodeproject.org/files/ENCFF831ORZ/@@download/ENCFF831ORZ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF784LSG bed narrowPeak peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF793GQM 5285515 ENCODE Processing Pipeline 58c69de03f703911fb9e04ef6aa411da https://www.encodeproject.org/files/ENCFF784LSG/@@download/ENCFF784LSG.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF856BRS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF784LSG 798 ENCODE Processing Pipeline bcb57db60365fcae2a584a9af7af3556 https://www.encodeproject.org/files/ENCFF856BRS/@@download/ENCFF856BRS.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF642ASG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF856BRS 16443 ENCODE Processing Pipeline 2c69f34861318ac5bb3b21ea42af45c1 https://www.encodeproject.org/files/ENCFF642ASG/@@download/ENCFF642ASG.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF137FJR bigWig fold change over control ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF793GQM 1211060140 ENCODE Processing Pipeline 2368a26a796d0779488add77a6f776ef https://www.encodeproject.org/files/ENCFF137FJR/@@download/ENCFF137FJR.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF574MRX bigWig signal p-value ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF585RLR 1258422618 ENCODE Processing Pipeline 0cd5e35447483eeb57c4e6710e82502b https://www.encodeproject.org/files/ENCFF574MRX/@@download/ENCFF574MRX.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF076DDS bigWig fold change over control ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF585RLR 1209907574 ENCODE Processing Pipeline 4edeef89af5c1964633133456bc6b69f https://www.encodeproject.org/files/ENCFF076DDS/@@download/ENCFF076DDS.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF845GGI bigBed narrowPeak peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF797GOG 11816715 ENCODE Processing Pipeline 8174022c90b442734426d7aa86944126 https://www.encodeproject.org/files/ENCFF845GGI/@@download/ENCFF845GGI.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF408PSW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF797GOG 982 ENCODE Processing Pipeline 39157f9344110ca446fe51e30b6ddca8 https://www.encodeproject.org/files/ENCFF408PSW/@@download/ENCFF408PSW.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF625TEZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF408PSW 16366 ENCODE Processing Pipeline ed016a89e7fb50260556ed3e400a4c3c https://www.encodeproject.org/files/ENCFF625TEZ/@@download/ENCFF625TEZ.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF797GOG bed narrowPeak peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF585RLR 5281716 ENCODE Processing Pipeline 6aa06e44d0d1f05ae1e789f397450794 https://www.encodeproject.org/files/ENCFF797GOG/@@download/ENCFF797GOG.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF000WCV bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WDK 426143509 Michael Snyder, Stanford bd09ca37c64a1e02cfe79a5b014826c6 https://www.encodeproject.org/files/ENCFF000WCV/@@download/ENCFF000WCV.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WCW bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WDO 519972562 Michael Snyder, Stanford 6f8fe96f6ba0995798a501d3d188f6a8 https://www.encodeproject.org/files/ENCFF000WCW/@@download/ENCFF000WCW.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WCX bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFF 1175113 Michael Snyder, Stanford a44bcaa7aa081c94253dcda89d59e3e0 https://www.encodeproject.org/files/ENCFF000WCX/@@download/ENCFF000WCX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WCY bigWig signal ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 340899373 Michael Snyder, Stanford 317f8eeaff1419b4e70f708006c403ba https://www.encodeproject.org/files/ENCFF000WCY/@@download/ENCFF000WCY.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WDK fastq reads ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 748899536 Michael Snyder, Stanford c15b269be02edcb93da9d703b82c35df https://www.encodeproject.org/files/ENCFF000WDK/@@download/ENCFF000WDK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WDO fastq reads ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1195358230 Michael Snyder, Stanford 747d7afe5d6d716065f3da39534aefea https://www.encodeproject.org/files/ENCFF000WDO/@@download/ENCFF000WDO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VFF bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 481613 Michael Snyder, Stanford 41f93eac498901e34d87ebab312e425f https://www.encodeproject.org/files/ENCFF001VFF/@@download/ENCFF001VFF.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CPL bed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 115381 ENCODE Consortium Analysis Working Group c30bfb05229daf605c7b5ef231d2f54c https://www.encodeproject.org/files/ENCFF002CPL/@@download/ENCFF002CPL.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF204MKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPL 347499 ENCODE Consortium c7aec6899888e33a5c70add82305034e https://www.encodeproject.org/files/ENCFF204MKZ/@@download/ENCFF204MKZ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF150IXN bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF643CGH 843273659 ENCODE Processing Pipeline ecada0b133f56524c835e9c35922d4b0 https://www.encodeproject.org/files/ENCFF150IXN/@@download/ENCFF150IXN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF887QJG bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF643CGH 1304182340 ENCODE Processing Pipeline 3ebe7916ce55d244af1581b9aea6240e https://www.encodeproject.org/files/ENCFF887QJG/@@download/ENCFF887QJG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF086GHN bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF643CGH 531788765 ENCODE Processing Pipeline 75fa17806be3923ee37f30f39270160a https://www.encodeproject.org/files/ENCFF086GHN/@@download/ENCFF086GHN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF707BSC bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF643CGH 781338093 ENCODE Processing Pipeline 18d0bfa6f2e687db3c001d2e78bd359b https://www.encodeproject.org/files/ENCFF707BSC/@@download/ENCFF707BSC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748LVZ bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF807MUK 840009119 ENCODE Processing Pipeline 1ac5a6611afd308ed72068f24fab8768 https://www.encodeproject.org/files/ENCFF748LVZ/@@download/ENCFF748LVZ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF834ABA bam unfiltered alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF807MUK 1297896467 ENCODE Processing Pipeline 15c1998a7c4a13e81aa1959842bd0dd6 https://www.encodeproject.org/files/ENCFF834ABA/@@download/ENCFF834ABA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF958IJR bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF807MUK 531677090 ENCODE Processing Pipeline 88602e4f44942dde62833d8b9ba7ff3b https://www.encodeproject.org/files/ENCFF958IJR/@@download/ENCFF958IJR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF276QQY bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF807MUK 780697287 ENCODE Processing Pipeline b3333e6ac44a35c0601c1219383eecf1 https://www.encodeproject.org/files/ENCFF276QQY/@@download/ENCFF276QQY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF868UJU bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 3887829 ENCODE Processing Pipeline 17baab5ed4f7c773f191519d3e6f609b https://www.encodeproject.org/files/ENCFF868UJU/@@download/ENCFF868UJU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381NIE bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO, ENCFF958IJR 4526368 ENCODE Processing Pipeline 711a80b078195952004d7ab68689723b https://www.encodeproject.org/files/ENCFF381NIE/@@download/ENCFF381NIE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF968KDX bed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF381NIE, ENCFF628ZZL, ENCFF868UJU 87660 ENCODE Processing Pipeline af9058a336a5f3bf39b5a34f6b37af34 https://www.encodeproject.org/files/ENCFF968KDX/@@download/ENCFF968KDX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF402FYF bed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF381NIE, ENCFF628ZZL, ENCFF868UJU 110449 ENCODE Processing Pipeline 811017cf274710fe6aaf8c06d8649580 https://www.encodeproject.org/files/ENCFF402FYF/@@download/ENCFF402FYF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF248MIM bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF868UJU 9697080 ENCODE Processing Pipeline f5c742e3941593c3e8e814876ecc499e https://www.encodeproject.org/files/ENCFF248MIM/@@download/ENCFF248MIM.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338BHH bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 75386986 ENCODE Processing Pipeline 64d6c13d0743cb9030865e4ce3aa2902 https://www.encodeproject.org/files/ENCFF338BHH/@@download/ENCFF338BHH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF201VIH bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO, ENCFF958IJR 169112218 ENCODE Processing Pipeline 61e5af75cbe590e79a34d41670b19129 https://www.encodeproject.org/files/ENCFF201VIH/@@download/ENCFF201VIH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF130WGW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF968KDX 191794 ENCODE Processing Pipeline cc456d36fde2088143757e7252c217a8 https://www.encodeproject.org/files/ENCFF130WGW/@@download/ENCFF130WGW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF972UXB bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO, ENCFF958IJR 492707781 ENCODE Processing Pipeline 5dab049b8f3a7a3bdc1f30381424e3eb https://www.encodeproject.org/files/ENCFF972UXB/@@download/ENCFF972UXB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998KFO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF402FYF 267647 ENCODE Processing Pipeline 3377403d3f02c618c86c54a82b2d9478 https://www.encodeproject.org/files/ENCFF998KFO/@@download/ENCFF998KFO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF832YAG bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 176997758 ENCODE Processing Pipeline 75075b34ec00dd3cf51ec40e2be08b4a https://www.encodeproject.org/files/ENCFF832YAG/@@download/ENCFF832YAG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF240PQR bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 301446391 ENCODE Processing Pipeline 960abd21b88b750e889884a69dbb9ad1 https://www.encodeproject.org/files/ENCFF240PQR/@@download/ENCFF240PQR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF851FHJ bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF628ZZL 10007095 ENCODE Processing Pipeline 4686e2a79fd6011ca0dccebd76e25f44 https://www.encodeproject.org/files/ENCFF851FHJ/@@download/ENCFF851FHJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF456LZL bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF381NIE 10951592 ENCODE Processing Pipeline 8bafaf1a6cf6c02e8f563d80c53b33a8 https://www.encodeproject.org/files/ENCFF456LZL/@@download/ENCFF456LZL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354KLG bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 208608246 ENCODE Processing Pipeline 9e985c3d5cdabff86c8d43204937dcf1 https://www.encodeproject.org/files/ENCFF354KLG/@@download/ENCFF354KLG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF628ZZL bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 3842869 ENCODE Processing Pipeline 3de0644af2684ccabf3006cced7086dd https://www.encodeproject.org/files/ENCFF628ZZL/@@download/ENCFF628ZZL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF263WFS bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086GHN, ENCFF477ZKJ 75473365 ENCODE Processing Pipeline 6c39abad9d00157479f800da262d5326 https://www.encodeproject.org/files/ENCFF263WFS/@@download/ENCFF263WFS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF015ASS bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086GHN, ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 169156719 ENCODE Processing Pipeline 647b3ae7cd57bb8fd6dafcaa4a8f75d1 https://www.encodeproject.org/files/ENCFF015ASS/@@download/ENCFF015ASS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381YNV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF465IMC 192627 ENCODE Processing Pipeline b9786a9cbc67256d3061a7c1e78326fe https://www.encodeproject.org/files/ENCFF381YNV/@@download/ENCFF381YNV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540XYR bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF327IRT 9691150 ENCODE Processing Pipeline 4cdbd4362c1724d9996dc34089ce49f3 https://www.encodeproject.org/files/ENCFF540XYR/@@download/ENCFF540XYR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF678LHU bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086GHN, ENCFF477ZKJ 208766661 ENCODE Processing Pipeline 2db9e7e2c594a2312dac1102e3f76e17 https://www.encodeproject.org/files/ENCFF678LHU/@@download/ENCFF678LHU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF002KFE bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF645NWZ 10004517 ENCODE Processing Pipeline a6afbc2628f303f67bd60f4882a3d92a https://www.encodeproject.org/files/ENCFF002KFE/@@download/ENCFF002KFE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF645NWZ bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 3844324 ENCODE Processing Pipeline b4789c7655cc464eb3b23a3bc194d7b6 https://www.encodeproject.org/files/ENCFF645NWZ/@@download/ENCFF645NWZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF465IMC bed narrowPeak conservative idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016AAA, ENCFF327IRT, ENCFF419RSJ, ENCFF645NWZ 88183 ENCODE Processing Pipeline e7187e3af6ff32a07295275a28ad30ad https://www.encodeproject.org/files/ENCFF465IMC/@@download/ENCFF465IMC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259LNG bed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016AAA, ENCFF327IRT, ENCFF419RSJ, ENCFF645NWZ 115412 ENCODE Processing Pipeline 65d56d051c1b7ba9e9fa799a84f2de86 https://www.encodeproject.org/files/ENCFF259LNG/@@download/ENCFF259LNG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF558HBS bigWig signal p-value ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 177040100 ENCODE Processing Pipeline ba58c9e8cdad15d22f78dd6a1f7f3e43 https://www.encodeproject.org/files/ENCFF558HBS/@@download/ENCFF558HBS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF314IEF bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 299712059 ENCODE Processing Pipeline 32efd5a29914be9f0fe97a872443d35c https://www.encodeproject.org/files/ENCFF314IEF/@@download/ENCFF314IEF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF300YPA bigWig fold change over control ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086GHN, ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 493571352 ENCODE Processing Pipeline 9751a4fd7c4ca7e3d5dab390c6a38f58 https://www.encodeproject.org/files/ENCFF300YPA/@@download/ENCFF300YPA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF327IRT bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086GHN, ENCFF477ZKJ 3885869 ENCODE Processing Pipeline 277f7af8631e7e9ede1e404280a5b04c https://www.encodeproject.org/files/ENCFF327IRT/@@download/ENCFF327IRT.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF016AAA bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF086GHN, ENCFF477ZKJ, ENCFF707BSC, ENCFF710SMS 4525846 ENCODE Processing Pipeline 3c3efc21d1ec5362698092e849a9ea21 https://www.encodeproject.org/files/ENCFF016AAA/@@download/ENCFF016AAA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF825PWT bigBed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016AAA 10951612 ENCODE Processing Pipeline 2e11c4e0aca2fba3466684e2752fdfc3 https://www.encodeproject.org/files/ENCFF825PWT/@@download/ENCFF825PWT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375WCQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF259LNG 274459 ENCODE Processing Pipeline 3c1d6562e9fdd1673647842c2d876c14 https://www.encodeproject.org/files/ENCFF375WCQ/@@download/ENCFF375WCQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PRV bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PSD 755619753 Richard Myers, HAIB 844702288afe2c5185e7c61c06f1d0a2 https://www.encodeproject.org/files/ENCFF000PRV/@@download/ENCFF000PRV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000PRW bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PSE 931709662 Richard Myers, HAIB eee78dc4cbfb70251025907c6ce96497 https://www.encodeproject.org/files/ENCFF000PRW/@@download/ENCFF000PRW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000PRX bigBed broadPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UIA 568605 Richard Myers, HAIB cfea502539895fdd1ae5753a03b8031b https://www.encodeproject.org/files/ENCFF000PRX/@@download/ENCFF000PRX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000PRY bigBed broadPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UIB 254001 Richard Myers, HAIB 6457c8cefe501b44ef1dcbf826701385 https://www.encodeproject.org/files/ENCFF000PRY/@@download/ENCFF000PRY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000PRZ bigWig raw signal ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 31209515 Richard Myers, HAIB 8f5546e8ca66d828b7f17125852966e7 https://www.encodeproject.org/files/ENCFF000PRZ/@@download/ENCFF000PRZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF000PSB bigWig raw signal ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 10371116 Richard Myers, HAIB 1fe6b839a087c469724ee8ac0f7f0dcd https://www.encodeproject.org/files/ENCFF000PSB/@@download/ENCFF000PSB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF000PSD fastq reads ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 727013386 Richard Myers, HAIB 58560b4e522abd59614dec8eab397d74 https://www.encodeproject.org/files/ENCFF000PSD/@@download/ENCFF000PSD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000PSE fastq reads ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 995663932 Richard Myers, HAIB 3d8732d4407c2f6f2bb2c15991c48aa5 https://www.encodeproject.org/files/ENCFF000PSE/@@download/ENCFF000PSE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001UIA bed broadPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 367239 Richard Myers, HAIB e2c57f2448d3ac6c75d574f1f24813d3 https://www.encodeproject.org/files/ENCFF001UIA/@@download/ENCFF001UIA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001UIB bed broadPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 143783 Richard Myers, HAIB b91d33a13424ae87a79faa512c01f58c https://www.encodeproject.org/files/ENCFF001UIB/@@download/ENCFF001UIB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF002CLI bed narrowPeak optimal idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 380028 ENCODE Consortium Analysis Working Group 15a512ff508f74ddd63211bb308b1fe5 https://www.encodeproject.org/files/ENCFF002CLI/@@download/ENCFF002CLI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance ENCFF910CML bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLI 826778 ENCODE Consortium d31ec90bc6236f48d94c81742376748f https://www.encodeproject.org/files/ENCFF910CML/@@download/ENCFF910CML.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF421OBJ bam unfiltered alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSD, ENCFF643CGH 901756564 ENCODE Processing Pipeline 558efd5054354d28269b9e97fc118a32 https://www.encodeproject.org/files/ENCFF421OBJ/@@download/ENCFF421OBJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF499BAH bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSD, ENCFF643CGH 551430997 ENCODE Processing Pipeline a56bcb060382acf7e0bac1c03ecb637d https://www.encodeproject.org/files/ENCFF499BAH/@@download/ENCFF499BAH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF056BXB bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSE, ENCFF643CGH 338465756 ENCODE Processing Pipeline cef3bbe7226380fd7ee027db02fba1c4 https://www.encodeproject.org/files/ENCFF056BXB/@@download/ENCFF056BXB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF748ERK bam unfiltered alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSE, ENCFF643CGH 1149366982 ENCODE Processing Pipeline 45a5b21f7fd63264b7bc89ca644c02f1 https://www.encodeproject.org/files/ENCFF748ERK/@@download/ENCFF748ERK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF299WPU bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSD, ENCFF807MUK 551729673 ENCODE Processing Pipeline 2a645522ba6a6e680d718de35321d5d9 https://www.encodeproject.org/files/ENCFF299WPU/@@download/ENCFF299WPU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF925FRM bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSE, ENCFF807MUK 338725466 ENCODE Processing Pipeline 48a9fc8af9e42397be729ff011e40ed9 https://www.encodeproject.org/files/ENCFF925FRM/@@download/ENCFF925FRM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF258DFO bam unfiltered alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSD, ENCFF807MUK 899511757 ENCODE Processing Pipeline 3e3a4b4f9a12c9a315259dd48ae6bc7a https://www.encodeproject.org/files/ENCFF258DFO/@@download/ENCFF258DFO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF958DMR bam unfiltered alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSE, ENCFF807MUK 1147573829 ENCODE Processing Pipeline f0554fefc5ceec4a04c8e51a277b36b3 https://www.encodeproject.org/files/ENCFF958DMR/@@download/ENCFF958DMR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF086XMQ bigWig signal p-value ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF499BAH 407536104 ENCODE Processing Pipeline b76792064108270a41a62714c5a792ce https://www.encodeproject.org/files/ENCFF086XMQ/@@download/ENCFF086XMQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF748RLY bigWig signal p-value ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF056BXB, ENCFF285LVE 355118301 ENCODE Processing Pipeline 5aeac1c381fed7b5647275cdc1f3337f https://www.encodeproject.org/files/ENCFF748RLY/@@download/ENCFF748RLY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF775SBU bigWig signal p-value ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF056BXB, ENCFF285LVE, ENCFF499BAH 587969770 ENCODE Processing Pipeline 7d73314d72259783488ee54d57d9a87e https://www.encodeproject.org/files/ENCFF775SBU/@@download/ENCFF775SBU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF173FYP bigWig fold change over control ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF499BAH 313402361 ENCODE Processing Pipeline 1f7c297de5f7344af58c42f0fb6200f8 https://www.encodeproject.org/files/ENCFF173FYP/@@download/ENCFF173FYP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF872FSE bigWig fold change over control ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF056BXB, ENCFF285LVE 199721438 ENCODE Processing Pipeline 90c05442242e5d00a65cea8405c42ca6 https://www.encodeproject.org/files/ENCFF872FSE/@@download/ENCFF872FSE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF954VXQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF042DUJ 377740 ENCODE Processing Pipeline 16e06fc8eb8a8b538ff69eaf0ce2e3a2 https://www.encodeproject.org/files/ENCFF954VXQ/@@download/ENCFF954VXQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF947EVC bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF056BXB, ENCFF285LVE 4856937 ENCODE Processing Pipeline 312e72fc35ddcca7942ea92a644f3ce6 https://www.encodeproject.org/files/ENCFF947EVC/@@download/ENCFF947EVC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF955YEZ bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF499BAH 4836034 ENCODE Processing Pipeline f86bb1b3df9b644e5d560070c760ca2e https://www.encodeproject.org/files/ENCFF955YEZ/@@download/ENCFF955YEZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF276RSI bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF056BXB, ENCFF285LVE, ENCFF499BAH 5650380 ENCODE Processing Pipeline 6d7e9fa192c0898180e66279914948f9 https://www.encodeproject.org/files/ENCFF276RSI/@@download/ENCFF276RSI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF176UBJ bigBed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276RSI 13215613 ENCODE Processing Pipeline 0a580258ad15e7852d02bd8867f2cf02 https://www.encodeproject.org/files/ENCFF176UBJ/@@download/ENCFF176UBJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF677ERZ bigWig fold change over control ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF056BXB, ENCFF285LVE, ENCFF499BAH 458016132 ENCODE Processing Pipeline b7d1126f10dd39d8c56ebb24cba28cb9 https://www.encodeproject.org/files/ENCFF677ERZ/@@download/ENCFF677ERZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF340JMW bigBed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF947EVC 12088267 ENCODE Processing Pipeline 70c39e876d234abfd6a14fc711d165fe https://www.encodeproject.org/files/ENCFF340JMW/@@download/ENCFF340JMW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF270TZK bigBed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF955YEZ 10803200 ENCODE Processing Pipeline 56a45df05896fa5a7af222ecce3c6730 https://www.encodeproject.org/files/ENCFF270TZK/@@download/ENCFF270TZK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF520IPU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177YDT 843040 ENCODE Processing Pipeline 6e07ce7da2168c46c2c6199199266066 https://www.encodeproject.org/files/ENCFF520IPU/@@download/ENCFF520IPU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF042DUJ bed narrowPeak conservative idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276RSI, ENCFF419RSJ, ENCFF947EVC, ENCFF955YEZ 169180 ENCODE Processing Pipeline e27d3e59130cced68f3a24907ce637b4 https://www.encodeproject.org/files/ENCFF042DUJ/@@download/ENCFF042DUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF177YDT bed narrowPeak optimal idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276RSI, ENCFF419RSJ, ENCFF947EVC, ENCFF955YEZ 392410 ENCODE Processing Pipeline 2358169f2f8e6e7fb8d206a097f66e89 https://www.encodeproject.org/files/ENCFF177YDT/@@download/ENCFF177YDT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF535TYX bigWig signal p-value ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF925FRM 387331643 ENCODE Processing Pipeline cadc6058589e53a38f808048aa2c78f2 https://www.encodeproject.org/files/ENCFF535TYX/@@download/ENCFF535TYX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF710UMG bigWig signal p-value ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299WPU, ENCFF346RZT 380159758 ENCODE Processing Pipeline 1448e7924f9364bd94e839ae0bf75ab9 https://www.encodeproject.org/files/ENCFF710UMG/@@download/ENCFF710UMG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF054ZHU bigWig fold change over control ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF925FRM 199896152 ENCODE Processing Pipeline 71a041fa69b9c4e898daeff9a9265c37 https://www.encodeproject.org/files/ENCFF054ZHU/@@download/ENCFF054ZHU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF324BHL bigWig signal p-value ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299WPU, ENCFF346RZT, ENCFF925FRM 502736988 ENCODE Processing Pipeline d1b139168ab853254747b520b1bc9fe1 https://www.encodeproject.org/files/ENCFF324BHL/@@download/ENCFF324BHL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF668IVT bigWig fold change over control ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299WPU, ENCFF346RZT 316665570 ENCODE Processing Pipeline 2b58f1c9786722b5cf74eefddad0af34 https://www.encodeproject.org/files/ENCFF668IVT/@@download/ENCFF668IVT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF387XCG bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299WPU, ENCFF346RZT 4836239 ENCODE Processing Pipeline 39c5f3ab0bde123d63d31b60f0c13e36 https://www.encodeproject.org/files/ENCFF387XCG/@@download/ENCFF387XCG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF725GND bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299WPU, ENCFF346RZT, ENCFF925FRM 5656944 ENCODE Processing Pipeline 6ec2c46b4a88c6ee7c6feea621ecdd78 https://www.encodeproject.org/files/ENCFF725GND/@@download/ENCFF725GND.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF435UFJ bigWig fold change over control ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299WPU, ENCFF346RZT, ENCFF925FRM 461033565 ENCODE Processing Pipeline 8adad58375a5cf4d941f21cbc700268a https://www.encodeproject.org/files/ENCFF435UFJ/@@download/ENCFF435UFJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF922BBL bigBed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF224GWF 9975062 ENCODE Processing Pipeline 452520512c44938b742e79c8faa2447f https://www.encodeproject.org/files/ENCFF922BBL/@@download/ENCFF922BBL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF478JOM bigBed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF387XCG 10806955 ENCODE Processing Pipeline b638537ef25ed9bdd12dc1c7c4ae3fc7 https://www.encodeproject.org/files/ENCFF478JOM/@@download/ENCFF478JOM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF224GWF bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF925FRM 4818281 ENCODE Processing Pipeline c31a6a7181a1bd4c06f07cbba3a96d5c https://www.encodeproject.org/files/ENCFF224GWF/@@download/ENCFF224GWF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF835DJP bigBed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF725GND 13220907 ENCODE Processing Pipeline 68453a55729498c0ed3567893cc04736 https://www.encodeproject.org/files/ENCFF835DJP/@@download/ENCFF835DJP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF858QVH bed narrowPeak conservative idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF224GWF, ENCFF387XCG, ENCFF725GND 169762 ENCODE Processing Pipeline 35a25f083c010a87e81e888abf0b775f https://www.encodeproject.org/files/ENCFF858QVH/@@download/ENCFF858QVH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF346UPP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF858QVH 377963 ENCODE Processing Pipeline 18ca98b141243c29bac1474b6410b937 https://www.encodeproject.org/files/ENCFF346UPP/@@download/ENCFF346UPP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF420KEV bed narrowPeak optimal idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF224GWF, ENCFF387XCG, ENCFF725GND 399156 ENCODE Processing Pipeline 88ed7aa67f32ef173648f7033515b4f7 https://www.encodeproject.org/files/ENCFF420KEV/@@download/ENCFF420KEV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF543QDV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF420KEV 851894 ENCODE Processing Pipeline d7528090e5a838e8255753d521b01e77 https://www.encodeproject.org/files/ENCFF543QDV/@@download/ENCFF543QDV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000OOY bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OPK 1019440109 Richard Myers, HAIB e6450c1a8e8df7c22572e8b4aa5b3c64 https://www.encodeproject.org/files/ENCFF000OOY/@@download/ENCFF000OOY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000OOZ bigBed broadPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBK 120035 Richard Myers, HAIB 6625b2cb5dbd70bb41f55ce07cef7b9b https://www.encodeproject.org/files/ENCFF000OOZ/@@download/ENCFF000OOZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000OPA bigBed broadPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBL 267344 Richard Myers, HAIB e0bf66330732e51f93b87110f89457ea https://www.encodeproject.org/files/ENCFF000OPA/@@download/ENCFF000OPA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000OPB bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OPL 1132473118 Richard Myers, HAIB d5abf8e7aa1517536951bc04e9502e81 https://www.encodeproject.org/files/ENCFF000OPB/@@download/ENCFF000OPB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000OPD bigWig raw signal ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 6693240 Richard Myers, HAIB 1bfcc9a1b10b3096804c063797a0e0f3 https://www.encodeproject.org/files/ENCFF000OPD/@@download/ENCFF000OPD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000OPE bigWig raw signal ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 15104339 Richard Myers, HAIB 13346e979315718a669ac39ad848d93b https://www.encodeproject.org/files/ENCFF000OPE/@@download/ENCFF000OPE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000OPK fastq reads ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1000956349 Richard Myers, HAIB 1ec9aa57cbe7fbe0ed60399afce08e5d https://www.encodeproject.org/files/ENCFF000OPK/@@download/ENCFF000OPK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000OPL fastq reads ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1109176398 Richard Myers, HAIB 02a5a385fc77713f9ccdad60f365e36e https://www.encodeproject.org/files/ENCFF000OPL/@@download/ENCFF000OPL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF001UBK bed broadPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 1 48091 Richard Myers, HAIB 823770a53c6b9e8c4c2acedb820f438c https://www.encodeproject.org/files/ENCFF001UBK/@@download/ENCFF001UBK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UBL bed broadPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 1 143281 Richard Myers, HAIB aa6cc85ac72e856bed322c1956f7bc74 https://www.encodeproject.org/files/ENCFF001UBL/@@download/ENCFF001UBL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CIY bed narrowPeak optimal idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 108431 ENCODE Consortium Analysis Working Group 80752ae1c5310b02450b06c83f3df628 https://www.encodeproject.org/files/ENCFF002CIY/@@download/ENCFF002CIY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF290XYE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIY 228049 ENCODE Consortium 827ceb8290839cddf41f61255b9a9c2b https://www.encodeproject.org/files/ENCFF290XYE/@@download/ENCFF290XYE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF716SQR bam unfiltered alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPK, ENCFF643CGH 1250057845 ENCODE Processing Pipeline 935a00fa63b92f834b76ee5e73ccc581 https://www.encodeproject.org/files/ENCFF716SQR/@@download/ENCFF716SQR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF397UQW bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPK, ENCFF643CGH 718958398 ENCODE Processing Pipeline d5b6a187a80d622b37b18d49cbc103ae https://www.encodeproject.org/files/ENCFF397UQW/@@download/ENCFF397UQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF146IPZ bam unfiltered alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPL, ENCFF643CGH 1444167646 ENCODE Processing Pipeline d1904578dfeb401b113b2f0164b149cf https://www.encodeproject.org/files/ENCFF146IPZ/@@download/ENCFF146IPZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF218SMD bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPL, ENCFF643CGH 748855066 ENCODE Processing Pipeline ac0adc8edfe4346cd349022e03bd0872 https://www.encodeproject.org/files/ENCFF218SMD/@@download/ENCFF218SMD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF179VVI bam unfiltered alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPK, ENCFF807MUK 1246109595 ENCODE Processing Pipeline cfbbbb9a08650df0b90c1a3eebb6b01e https://www.encodeproject.org/files/ENCFF179VVI/@@download/ENCFF179VVI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF101PTT bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPK, ENCFF807MUK 719364958 ENCODE Processing Pipeline b522e490470e5d2e87d6c17b48f94fc2 https://www.encodeproject.org/files/ENCFF101PTT/@@download/ENCFF101PTT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF499JJE bam unfiltered alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPL, ENCFF807MUK 1438539291 ENCODE Processing Pipeline 11cf0a05b8cc1f77907d31ce32fbb5b9 https://www.encodeproject.org/files/ENCFF499JJE/@@download/ENCFF499JJE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF697QYW bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPL, ENCFF807MUK 749221691 ENCODE Processing Pipeline 1da3def2751f989482a9935df59c18bf https://www.encodeproject.org/files/ENCFF697QYW/@@download/ENCFF697QYW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF514TFF bigWig signal p-value ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF218SMD, ENCFF948LKH 533834428 ENCODE Processing Pipeline 1c39179b8d3b9246a4a0671f52393840 https://www.encodeproject.org/files/ENCFF514TFF/@@download/ENCFF514TFF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF494DRM bigWig signal p-value ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF218SMD, ENCFF397UQW, ENCFF948LKH 547798489 ENCODE Processing Pipeline 57fa024ce45c0045452013778ea7dfc1 https://www.encodeproject.org/files/ENCFF494DRM/@@download/ENCFF494DRM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF917QCX bigWig signal p-value ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF397UQW, ENCFF948LKH 454924925 ENCODE Processing Pipeline ba0961718a1fa50c80caa6a85537f8fc https://www.encodeproject.org/files/ENCFF917QCX/@@download/ENCFF917QCX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF424DKN bigWig fold change over control ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF218SMD, ENCFF948LKH 367068723 ENCODE Processing Pipeline f04786b14180218fce84be6b62ac5579 https://www.encodeproject.org/files/ENCFF424DKN/@@download/ENCFF424DKN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF593FGQ bigWig fold change over control ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF397UQW, ENCFF948LKH 362426396 ENCODE Processing Pipeline d44047d93efb376e101b10365058f4a5 https://www.encodeproject.org/files/ENCFF593FGQ/@@download/ENCFF593FGQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF640QBB bigWig fold change over control ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF218SMD, ENCFF397UQW, ENCFF948LKH 627269531 ENCODE Processing Pipeline 95c05b8bc467e54d8faf4de21069ef44 https://www.encodeproject.org/files/ENCFF640QBB/@@download/ENCFF640QBB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF616MPS bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF397UQW, ENCFF948LKH 4190589 ENCODE Processing Pipeline 330062aebaa2f92d56096d10670aee8e https://www.encodeproject.org/files/ENCFF616MPS/@@download/ENCFF616MPS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF234SOS bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF218SMD, ENCFF948LKH 4394146 ENCODE Processing Pipeline 9a20ec7068c835f2ef529a9e7ae9ac71 https://www.encodeproject.org/files/ENCFF234SOS/@@download/ENCFF234SOS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF980JFW bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF218SMD, ENCFF397UQW, ENCFF948LKH 5392644 ENCODE Processing Pipeline 59fdb12ed9a62f7d35f95643b902769f https://www.encodeproject.org/files/ENCFF980JFW/@@download/ENCFF980JFW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF154NJK bigBed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF616MPS 10677796 ENCODE Processing Pipeline 3884ef8d97490126c429cfd1ea01467e https://www.encodeproject.org/files/ENCFF154NJK/@@download/ENCFF154NJK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF566HTZ bigBed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234SOS 10664605 ENCODE Processing Pipeline ee46dc2af8a559f08beb8b7ad066237f https://www.encodeproject.org/files/ENCFF566HTZ/@@download/ENCFF566HTZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF183ZNB bed narrowPeak conservative idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF234SOS, ENCFF419RSJ, ENCFF616MPS, ENCFF980JFW 118313 ENCODE Processing Pipeline e1968096cc12b692d1bf0565fc39c6ea https://www.encodeproject.org/files/ENCFF183ZNB/@@download/ENCFF183ZNB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF871WIG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF183ZNB 241752 ENCODE Processing Pipeline 05809a30f3d84e599364ee540820d739 https://www.encodeproject.org/files/ENCFF871WIG/@@download/ENCFF871WIG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF009IVJ bed narrowPeak optimal idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF234SOS, ENCFF419RSJ, ENCFF616MPS, ENCFF980JFW 172087 ENCODE Processing Pipeline d5025509d1d369bfdabc0eb2c82f18f2 https://www.encodeproject.org/files/ENCFF009IVJ/@@download/ENCFF009IVJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF346UJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF009IVJ 314707 ENCODE Processing Pipeline d03aad1bd2b84fa4862845ce5ffb0834 https://www.encodeproject.org/files/ENCFF346UJQ/@@download/ENCFF346UJQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF868FHD bigBed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF980JFW 11482123 ENCODE Processing Pipeline 0dac6da996457ae05daf6055a7c96d18 https://www.encodeproject.org/files/ENCFF868FHD/@@download/ENCFF868FHD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF613PGF bigWig signal p-value ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101PTT, ENCFF356DXM 462295016 ENCODE Processing Pipeline 9e8136e3351fc37c7d16e8741bca1376 https://www.encodeproject.org/files/ENCFF613PGF/@@download/ENCFF613PGF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF759OKW bigWig signal p-value ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF697QYW 553018863 ENCODE Processing Pipeline 74bfeb649dbf1c5b694c72c130c20cd5 https://www.encodeproject.org/files/ENCFF759OKW/@@download/ENCFF759OKW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF536YJT bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101PTT, ENCFF356DXM 4194122 ENCODE Processing Pipeline e12b8b3c9acc5a466cbdefcdaa72a1e3 https://www.encodeproject.org/files/ENCFF536YJT/@@download/ENCFF536YJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF183DNV bigBed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF273RCZ 11453858 ENCODE Processing Pipeline a036edb8c27f53744940713d6ded2923 https://www.encodeproject.org/files/ENCFF183DNV/@@download/ENCFF183DNV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF064XVF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF902CVS 328203 ENCODE Processing Pipeline fa64bd4113d2878613e07a0e1beff934 https://www.encodeproject.org/files/ENCFF064XVF/@@download/ENCFF064XVF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF273RCZ bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101PTT, ENCFF356DXM, ENCFF697QYW 5408946 ENCODE Processing Pipeline 6e4ef523a99b68027d44253366648d21 https://www.encodeproject.org/files/ENCFF273RCZ/@@download/ENCFF273RCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF902CVS bed narrowPeak optimal idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF159YRA, ENCFF273RCZ, ENCFF536YJT 183886 ENCODE Processing Pipeline 3f3592fa333e52b9cca1baa9811787c8 https://www.encodeproject.org/files/ENCFF902CVS/@@download/ENCFF902CVS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF329DBY bigWig fold change over control ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101PTT, ENCFF356DXM 366282662 ENCODE Processing Pipeline c70dabae07b445c3e70bfbc8dd8f8e45 https://www.encodeproject.org/files/ENCFF329DBY/@@download/ENCFF329DBY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF159YRA bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF697QYW 4464087 ENCODE Processing Pipeline 4ecc8bf46ac16b07181bedc3bb3760de https://www.encodeproject.org/files/ENCFF159YRA/@@download/ENCFF159YRA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF427XSX bigBed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF536YJT 10682832 ENCODE Processing Pipeline f5b2d91328cfabb1560b4afdb994cfba https://www.encodeproject.org/files/ENCFF427XSX/@@download/ENCFF427XSX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF490HQY bigWig signal p-value ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101PTT, ENCFF356DXM, ENCFF697QYW 546008905 ENCODE Processing Pipeline ef507c0c754151ef7a8c0f952dbedaaf https://www.encodeproject.org/files/ENCFF490HQY/@@download/ENCFF490HQY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF254NWT bigWig fold change over control ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF697QYW 364985934 ENCODE Processing Pipeline 70042ca55379e3e159157eb0bb36ffa9 https://www.encodeproject.org/files/ENCFF254NWT/@@download/ENCFF254NWT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF361FGQ bigWig fold change over control ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101PTT, ENCFF356DXM, ENCFF697QYW 639085236 ENCODE Processing Pipeline 6d94f488eb25da729841a2702edc3f04 https://www.encodeproject.org/files/ENCFF361FGQ/@@download/ENCFF361FGQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF710ZZY bigBed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF159YRA 10742075 ENCODE Processing Pipeline e97d13c8a8daf550485616de7b10c27c https://www.encodeproject.org/files/ENCFF710ZZY/@@download/ENCFF710ZZY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF454ADD bed narrowPeak conservative idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF159YRA, ENCFF273RCZ, ENCFF536YJT 124344 ENCODE Processing Pipeline 7804a5fff9d5ebdfd03171f9d141bb4b https://www.encodeproject.org/files/ENCFF454ADD/@@download/ENCFF454ADD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF259QVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF454ADD 248213 ENCODE Processing Pipeline 2bdfae7282117cfe45e4ee51980befad https://www.encodeproject.org/files/ENCFF259QVQ/@@download/ENCFF259QVQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000SBA bigWig base overlap signal ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 401777105 Vishwanath Iyer, UTA e4d4a98d05318da7160cbbc4791ba83d https://www.encodeproject.org/files/ENCFF000SBA/@@download/ENCFF000SBA.bigWig hg19 released low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000SBB bigBed narrowPeak peaks ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTT 3695676 Vishwanath Iyer, UTA 3caa5920eaa92fff618dd5228688d33b https://www.encodeproject.org/files/ENCFF000SBB/@@download/ENCFF000SBB.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000SBC bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000SBI 1049577301 Vishwanath Iyer, UTA 3fc7a5fc647f75ec15397cbc8e731ffb https://www.encodeproject.org/files/ENCFF000SBC/@@download/ENCFF000SBC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000SBD bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000SBK 1000273309 Vishwanath Iyer, UTA cac2f2ca52dc7f0a6448e3ccf2204205 https://www.encodeproject.org/files/ENCFF000SBD/@@download/ENCFF000SBD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000SBI fastq reads ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 919288033 Vishwanath Iyer, UTA 370f92afe8a636afc509e5946651b947 https://www.encodeproject.org/files/ENCFF000SBI/@@download/ENCFF000SBI.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, low read depth biological replicates with identical biosample ENCFF000SBK fastq reads ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 900062252 Vishwanath Iyer, UTA 985ae9d76701893603bc8bec0c029cef https://www.encodeproject.org/files/ENCFF000SBK/@@download/ENCFF000SBK.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, low read depth biological replicates with identical biosample ENCFF000SBS bigWig signal ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1597860094 Vishwanath Iyer, UTA 42ce7255186688d5881ea9cb5b6b81c7 https://www.encodeproject.org/files/ENCFF000SBS/@@download/ENCFF000SBS.bigWig hg19 released low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UTT bed narrowPeak peaks ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2205165 Vishwanath Iyer, UTA d1cebd057ea17dd9de18487291bd39de https://www.encodeproject.org/files/ENCFF001UTT/@@download/ENCFF001UTT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002DBQ bed narrowPeak optimal idr thresholded peaks ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 385528 ENCODE Consortium Analysis Working Group fe888d1d6e70c184e86aa558a8956409 https://www.encodeproject.org/files/ENCFF002DBQ/@@download/ENCFF002DBQ.bed.gz hg19 released low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF195MDF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBQ 1067570 ENCODE Consortium 76a7e2ac0b8fc262bb08ed49f2d06a37 https://www.encodeproject.org/files/ENCFF195MDF/@@download/ENCFF195MDF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF964ZYM bam unfiltered alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SBK, ENCFF807MUK 1226962189 ENCODE Processing Pipeline 41ce35cd44fdf167a79d080b4dbbdaeb https://www.encodeproject.org/files/ENCFF964ZYM/@@download/ENCFF964ZYM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF216WWF bam unfiltered alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SBK, ENCFF643CGH 1229636774 ENCODE Processing Pipeline 1a8a58fad3453b90e151cada3cd045a1 https://www.encodeproject.org/files/ENCFF216WWF/@@download/ENCFF216WWF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF207GHD bam unfiltered alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SBI, ENCFF807MUK 1278022036 ENCODE Processing Pipeline b353d360b3a17f715e444a5ed7d23c19 https://www.encodeproject.org/files/ENCFF207GHD/@@download/ENCFF207GHD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF235JOE bam unfiltered alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SBI, ENCFF643CGH 1282043839 ENCODE Processing Pipeline afceda1f756f4db03c7b9abe0f227d4a https://www.encodeproject.org/files/ENCFF235JOE/@@download/ENCFF235JOE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF339HEE bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SBK, ENCFF807MUK 805776082 ENCODE Processing Pipeline 567b6a952dd1346707f3753c1ad7add8 https://www.encodeproject.org/files/ENCFF339HEE/@@download/ENCFF339HEE.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF881YOO bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SBK, ENCFF643CGH 805428076 ENCODE Processing Pipeline f8dda5b74132529d02e66347f0a6cf77 https://www.encodeproject.org/files/ENCFF881YOO/@@download/ENCFF881YOO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF719UGN bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SBI, ENCFF807MUK 877935626 ENCODE Processing Pipeline b388e680f28d590a38577b1175388866 https://www.encodeproject.org/files/ENCFF719UGN/@@download/ENCFF719UGN.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF496YAE bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SBI, ENCFF643CGH 877493992 ENCODE Processing Pipeline 15a9902a96ea99d2817b16b3dfb32b7c https://www.encodeproject.org/files/ENCFF496YAE/@@download/ENCFF496YAE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF000VYZ bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VZL 342046837 Michael Snyder, Stanford 50a3d79a271cdd2ea7d2a2003f9a2c6c https://www.encodeproject.org/files/ENCFF000VYZ/@@download/ENCFF000VYZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000VZA bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VES 590373 Michael Snyder, Stanford 16ef6f78304a63f262ddec97a13a8a0e https://www.encodeproject.org/files/ENCFF000VZA/@@download/ENCFF000VZA.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000VZB bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VZK 337874036 Michael Snyder, Stanford 235981dcb3c84fa824c59b98f56c12f7 https://www.encodeproject.org/files/ENCFF000VZB/@@download/ENCFF000VZB.bam hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000VZC bigWig signal ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 225712125 Michael Snyder, Stanford 4d159a4c555faaff9627242549ab051d https://www.encodeproject.org/files/ENCFF000VZC/@@download/ENCFF000VZC.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000VZK fastq reads ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 787362099 Michael Snyder, Stanford 70db7cecda0a62ef55962c7adffb3f9b https://www.encodeproject.org/files/ENCFF000VZK/@@download/ENCFF000VZK.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth ENCFF000VZL fastq reads ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 822262478 Michael Snyder, Stanford 7c988732c669e03b6769d7e64e70305b https://www.encodeproject.org/files/ENCFF000VZL/@@download/ENCFF000VZL.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released low read length, low read depth, inconsistent control read length biological replicates with identical biosample control insufficient read depth ENCFF001VES bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 247686 Michael Snyder, Stanford 7e2d6c073f6790d08b075c859885f50c https://www.encodeproject.org/files/ENCFF001VES/@@download/ENCFF001VES.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002COZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 21770 ENCODE Consortium Analysis Working Group ce7292661cd93ab37f47d9f30154a57f https://www.encodeproject.org/files/ENCFF002COZ/@@download/ENCFF002COZ.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF409JUS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COZ 142998 ENCODE Consortium 308e536fb353dcd0ec38451696fc7adb https://www.encodeproject.org/files/ENCFF409JUS/@@download/ENCFF409JUS.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF851SSC bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF643CGH 864918679 ENCODE Processing Pipeline 9476dfe667b53b6db90d6f227bfe0863 https://www.encodeproject.org/files/ENCFF851SSC/@@download/ENCFF851SSC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF254WNB bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF643CGH 384575975 ENCODE Processing Pipeline dd75130d952c08aa5fa6b9334f7bfcfa https://www.encodeproject.org/files/ENCFF254WNB/@@download/ENCFF254WNB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF553YRB bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF643CGH 799020385 ENCODE Processing Pipeline 2b9a60a49942bc4881f2d2968438e7ff https://www.encodeproject.org/files/ENCFF553YRB/@@download/ENCFF553YRB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF952AWV bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF643CGH 517074625 ENCODE Processing Pipeline d86ca3c98b08f67efe8fea8fe2056a23 https://www.encodeproject.org/files/ENCFF952AWV/@@download/ENCFF952AWV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF247VET bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF807MUK 862279634 ENCODE Processing Pipeline ede5dbd522e6e33331378c90e3791661 https://www.encodeproject.org/files/ENCFF247VET/@@download/ENCFF247VET.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF888UWI bam unfiltered alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF807MUK 795867286 ENCODE Processing Pipeline 6b107f4ea589a8d49738ff09296f3bba https://www.encodeproject.org/files/ENCFF888UWI/@@download/ENCFF888UWI.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF570FPY bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF807MUK 517287432 ENCODE Processing Pipeline 6981524f7c55d436099a65ec5d1dbb34 https://www.encodeproject.org/files/ENCFF570FPY/@@download/ENCFF570FPY.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF442GDP bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF807MUK 382598184 ENCODE Processing Pipeline d9c9e6d0eef35e9c0843fe468210d684 https://www.encodeproject.org/files/ENCFF442GDP/@@download/ENCFF442GDP.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF963YNY bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 211110223 ENCODE Processing Pipeline a6cea7ed8bc8c2173fdc5ebb5740f6fe https://www.encodeproject.org/files/ENCFF963YNY/@@download/ENCFF963YNY.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF684EGR bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF442GDP, ENCFF570FPY 352089605 ENCODE Processing Pipeline ae74115c5bf8dc0ba52eaa673079da61 https://www.encodeproject.org/files/ENCFF684EGR/@@download/ENCFF684EGR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF766ERZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF126LPK, ENCFF168WPY, ENCFF955NAK 2372 ENCODE Processing Pipeline 95644ae74fe0934d417696338f134eae https://www.encodeproject.org/files/ENCFF766ERZ/@@download/ENCFF766ERZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF387KYD bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF952AWV 209314661 ENCODE Processing Pipeline 73d4d78895f26e9bd385e0916e82b2cb https://www.encodeproject.org/files/ENCFF387KYD/@@download/ENCFF387KYD.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF667XYV bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF254WNB, ENCFF952AWV 3632236 ENCODE Processing Pipeline d816706f41e40cc384584cd9d4a646c1 https://www.encodeproject.org/files/ENCFF667XYV/@@download/ENCFF667XYV.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF733VJI bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF667XYV 8076522 ENCODE Processing Pipeline aac4fbe3dd07cc8c75c599fbc10b0b2f https://www.encodeproject.org/files/ENCFF733VJI/@@download/ENCFF733VJI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF215YSS bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 179106885 ENCODE Processing Pipeline 6c11f221aca60e1fce215667a71e489e https://www.encodeproject.org/files/ENCFF215YSS/@@download/ENCFF215YSS.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF168WPY bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF442GDP, ENCFF570FPY 3633448 ENCODE Processing Pipeline 8d71854bcea9e4b356e0a56e50d8fadc https://www.encodeproject.org/files/ENCFF168WPY/@@download/ENCFF168WPY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF729STF bed narrowPeak conservative idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF126LPK, ENCFF168WPY, ENCFF955NAK 1989 ENCODE Processing Pipeline 9c1045dd64c024f0bafeb37ebda74a59 https://www.encodeproject.org/files/ENCFF729STF/@@download/ENCFF729STF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF822KDC bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 201633635 ENCODE Processing Pipeline 1fb861774e66fe668e0a800d6081e0b9 https://www.encodeproject.org/files/ENCFF822KDC/@@download/ENCFF822KDC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF622RJT bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF955NAK 69049 ENCODE Processing Pipeline 51f10ebc33d88b384b59efa29b544195 https://www.encodeproject.org/files/ENCFF622RJT/@@download/ENCFF622RJT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF102VQL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF729STF 46655 ENCODE Processing Pipeline c57ddd0673b4f3046dcc1288ed79badf https://www.encodeproject.org/files/ENCFF102VQL/@@download/ENCFF102VQL.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF126LPK bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 16440 ENCODE Processing Pipeline 463c61ace235cf292207aef54c3928c2 https://www.encodeproject.org/files/ENCFF126LPK/@@download/ENCFF126LPK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF838MMK bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF126LPK 99446 ENCODE Processing Pipeline 16edba844434a8d22c41d58724aaa2d7 https://www.encodeproject.org/files/ENCFF838MMK/@@download/ENCFF838MMK.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF302FDV bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF168WPY 8083024 ENCODE Processing Pipeline 91df51457e0d4fc63569d70db323687f https://www.encodeproject.org/files/ENCFF302FDV/@@download/ENCFF302FDV.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF319XGS bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF254WNB, ENCFF952AWV 203625998 ENCODE Processing Pipeline 0279fb59405528f82bab420bc1149897 https://www.encodeproject.org/files/ENCFF319XGS/@@download/ENCFF319XGS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF684PZF bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 213259327 ENCODE Processing Pipeline da5cbe1244cf8f6b838785bcedcf855e https://www.encodeproject.org/files/ENCFF684PZF/@@download/ENCFF684PZF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF261GHD bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420MOQ, ENCFF442GDP, ENCFF570FPY 203880871 ENCODE Processing Pipeline a7a1aa7617f54bcaeec7c2d9709cb43f https://www.encodeproject.org/files/ENCFF261GHD/@@download/ENCFF261GHD.bigWig hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF955NAK bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 5479 ENCODE Processing Pipeline b1936af0d64b4ab0da80648a0919ba88 https://www.encodeproject.org/files/ENCFF955NAK/@@download/ENCFF955NAK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF732JDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF766ERZ 39940 ENCODE Processing Pipeline 5cf7e0bdd9b9b863bedb177dcb6d675b https://www.encodeproject.org/files/ENCFF732JDM/@@download/ENCFF732JDM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF068IBC bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF254WNB 186014173 ENCODE Processing Pipeline 1e0fff659dacac3a98e426d3e6e4afae https://www.encodeproject.org/files/ENCFF068IBC/@@download/ENCFF068IBC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF783BIT bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF952AWV 3432630 ENCODE Processing Pipeline 3e2678673ffb95e3d733b662f5756641 https://www.encodeproject.org/files/ENCFF783BIT/@@download/ENCFF783BIT.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF175XNJ bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF254WNB 16381 ENCODE Processing Pipeline c99b62383a1a9dd5aeb8b9a13c7b7b0e https://www.encodeproject.org/files/ENCFF175XNJ/@@download/ENCFF175XNJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF743UMZ bed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF175XNJ, ENCFF419RSJ, ENCFF667XYV, ENCFF783BIT 3639 ENCODE Processing Pipeline 38ba7523d6f397303eccb71577377434 https://www.encodeproject.org/files/ENCFF743UMZ/@@download/ENCFF743UMZ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF259PLH bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF157YWH, ENCFF254WNB 204439552 ENCODE Processing Pipeline 6b67751c39eaf80264f07c9cb264a5ec https://www.encodeproject.org/files/ENCFF259PLH/@@download/ENCFF259PLH.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF617IUX bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF783BIT 7099879 ENCODE Processing Pipeline 37be99f18c8b8825d6517ccf7e7ccaee https://www.encodeproject.org/files/ENCFF617IUX/@@download/ENCFF617IUX.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF328PVT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF743UMZ 48864 ENCODE Processing Pipeline 0bbd7f3237a6171aab5946dfa0d24554 https://www.encodeproject.org/files/ENCFF328PVT/@@download/ENCFF328PVT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF561GWG bigWig signal p-value ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF157YWH, ENCFF952AWV 213019798 ENCODE Processing Pipeline 9233fb221b8c5d8c11e7d1bcf28fd9ec https://www.encodeproject.org/files/ENCFF561GWG/@@download/ENCFF561GWG.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF434QQH bigBed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF175XNJ 88140 ENCODE Processing Pipeline de2f48b0b00bc4e3891cb9afa1c70466 https://www.encodeproject.org/files/ENCFF434QQH/@@download/ENCFF434QQH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF899KXS bigWig fold change over control ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF157YWH, ENCFF254WNB, ENCFF952AWV 355218701 ENCODE Processing Pipeline 10e07e90e0416b5b9fde03973b98a3dc https://www.encodeproject.org/files/ENCFF899KXS/@@download/ENCFF899KXS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000AUU bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 2 1127602417 Bradley Bernstein, Broad 475f354cf90191c7cae8d7ef00c22bd3 https://www.encodeproject.org/files/ENCFF000AUU/@@download/ENCFF000AUU.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient replicate concordance ENCFF000AUV bigBed broadPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SUR 2498243 Bradley Bernstein, Broad 9544a611ef33d4248ba10b88a43c10eb https://www.encodeproject.org/files/ENCFF000AUV/@@download/ENCFF000AUV.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF000AUW bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 1 1426853347 Bradley Bernstein, Broad 86b592d7e61422d57a8a3b529039f1c7 https://www.encodeproject.org/files/ENCFF000AUW/@@download/ENCFF000AUW.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient replicate concordance ENCFF000AUX bigWig signal ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 519614158 Bradley Bernstein, Broad dfa778e423311c6c3a00638bd0bf3cf8 https://www.encodeproject.org/files/ENCFF000AUX/@@download/ENCFF000AUX.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient replicate concordance ENCFF001SUR bed broadPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1698649 Bradley Bernstein, Broad 6c8c9cc65b75f59252164d4b39e232c5 https://www.encodeproject.org/files/ENCFF001SUR/@@download/ENCFF001SUR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient replicate concordance ENCFF002CDR bed narrowPeak optimal idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 188338 ENCODE Consortium Analysis Working Group 1a3c274382e03b2aa6fb691837895fba https://www.encodeproject.org/files/ENCFF002CDR/@@download/ENCFF002CDR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from insufficient replicate concordance ENCFF999CLK bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CDR 517506 ENCODE Consortium 3ae4f4a665a7f10f1ff01b985d63a9c1 https://www.encodeproject.org/files/ENCFF999CLK/@@download/ENCFF999CLK.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF350FRQ fastq reads ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 2 36 single-ended 1190289790 Bradley Bernstein, Broad 8e469e272a4ba14a68dcc4f8add1883c https://www.encodeproject.org/files/ENCFF350FRQ/@@download/ENCFF350FRQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF380VMM fastq reads ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1524255374 Bradley Bernstein, Broad c9972e4c08649c5414bd0913d195b71e https://www.encodeproject.org/files/ENCFF380VMM/@@download/ENCFF380VMM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF473ZWP fastq reads ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 1 76 single-ended 3786510707 Bradley Bernstein, Broad a92cd6e5c8e8ea8c17b145ad6536238c https://www.encodeproject.org/files/ENCFF473ZWP/@@download/ENCFF473ZWP.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF787ZFQ bam unfiltered alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF350FRQ, ENCFF380VMM, ENCFF643CGH 3487412591 ENCODE Processing Pipeline 03bae5fe19b0e5dcdfdaa649634febfc https://www.encodeproject.org/files/ENCFF787ZFQ/@@download/ENCFF787ZFQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF824CZH bam unfiltered alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF350FRQ, ENCFF380VMM, ENCFF807MUK 3466314065 ENCODE Processing Pipeline 1e4963dc96268dc3aef2e136283560ca https://www.encodeproject.org/files/ENCFF824CZH/@@download/ENCFF824CZH.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF660BOQ bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF350FRQ, ENCFF380VMM, ENCFF643CGH 1736387728 ENCODE Processing Pipeline 99f1ce41e1a07397b92bff93ed8c7760 https://www.encodeproject.org/files/ENCFF660BOQ/@@download/ENCFF660BOQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF847WER bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF350FRQ, ENCFF380VMM, ENCFF807MUK 1737028941 ENCODE Processing Pipeline 2369b10bc64d0b0b52cfc3dd558dee4f https://www.encodeproject.org/files/ENCFF847WER/@@download/ENCFF847WER.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF652VQH bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF473ZWP, ENCFF643CGH 2091313759 ENCODE Processing Pipeline e96fb35d94e27339a57392e97a45a780 https://www.encodeproject.org/files/ENCFF652VQH/@@download/ENCFF652VQH.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF286IKC bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF473ZWP, ENCFF807MUK 2088958857 ENCODE Processing Pipeline 82c0c496b08d1c870f11d2ecf4dd627d https://www.encodeproject.org/files/ENCFF286IKC/@@download/ENCFF286IKC.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF457MDU bam unfiltered alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF473ZWP, ENCFF643CGH 3015585197 ENCODE Processing Pipeline 695d0e6af792263655cd1d66f0309d18 https://www.encodeproject.org/files/ENCFF457MDU/@@download/ENCFF457MDU.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF621HZF bam unfiltered alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF473ZWP, ENCFF807MUK 2995141675 ENCODE Processing Pipeline 1791aa6b46df960560f3c6d42d50d661 https://www.encodeproject.org/files/ENCFF621HZF/@@download/ENCFF621HZF.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF287DKP bigWig signal p-value ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF847WER 2004603974 ENCODE Processing Pipeline 57625689a45a9fbb78bf5bb8229bb81e https://www.encodeproject.org/files/ENCFF287DKP/@@download/ENCFF287DKP.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF105NNG bigWig signal p-value ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW, ENCFF847WER 2558295253 ENCODE Processing Pipeline c3d3750ef3f94891b3c90a95368afde4 https://www.encodeproject.org/files/ENCFF105NNG/@@download/ENCFF105NNG.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF899GCT bigWig fold change over control ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW 2256139131 ENCODE Processing Pipeline 99c4e08b5a3ffcaf51cb2d12474a5245 https://www.encodeproject.org/files/ENCFF899GCT/@@download/ENCFF899GCT.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF324HDN bigWig signal p-value ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW 2161903622 ENCODE Processing Pipeline 60e2aa64da50e897280446362210d563 https://www.encodeproject.org/files/ENCFF324HDN/@@download/ENCFF324HDN.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF561EWA bigBed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF975RMA 13108921 ENCODE Processing Pipeline d987c269ebb43d040302ed333d14cce2 https://www.encodeproject.org/files/ENCFF561EWA/@@download/ENCFF561EWA.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF617RGJ bed narrowPeak optimal idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF107CSR, ENCFF975RMA, ENCFF996PWC 168337 ENCODE Processing Pipeline 26d5177bf6655b63dcbaf3942dbc9702 https://www.encodeproject.org/files/ENCFF617RGJ/@@download/ENCFF617RGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF958PMY bigWig fold change over control ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF847WER 1709555440 ENCODE Processing Pipeline ed39812c1bfd05526ca68ee91222988d https://www.encodeproject.org/files/ENCFF958PMY/@@download/ENCFF958PMY.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF107CSR bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF847WER 7166750 ENCODE Processing Pipeline 4f0553da8e494c374dd563f90b3b825f https://www.encodeproject.org/files/ENCFF107CSR/@@download/ENCFF107CSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF996PWC bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW 7174160 ENCODE Processing Pipeline ab944eefc3d7a4b3d42132b44304dd84 https://www.encodeproject.org/files/ENCFF996PWC/@@download/ENCFF996PWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF125RIO bigBed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF107CSR 13033680 ENCODE Processing Pipeline 23679f0762c1a96e05bbb8ef21e58749 https://www.encodeproject.org/files/ENCFF125RIO/@@download/ENCFF125RIO.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF975RMA bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW, ENCFF847WER 7279448 ENCODE Processing Pipeline 393e6f409c28969cd7d0551e61d8af09 https://www.encodeproject.org/files/ENCFF975RMA/@@download/ENCFF975RMA.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF693GHB bed narrowPeak conservative idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF107CSR, ENCFF975RMA, ENCFF996PWC 70156 ENCODE Processing Pipeline 9d83e6e70a31eddec70fc873bf4c15c2 https://www.encodeproject.org/files/ENCFF693GHB/@@download/ENCFF693GHB.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF741MOG bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF693GHB 285030 ENCODE Processing Pipeline 85ef23e88d1660203646782ef7d6f22d https://www.encodeproject.org/files/ENCFF741MOG/@@download/ENCFF741MOG.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF938ASS bigWig fold change over control ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW, ENCFF847WER 2609245509 ENCODE Processing Pipeline 0f4be1af6a5121a7bcc778dae8b51276 https://www.encodeproject.org/files/ENCFF938ASS/@@download/ENCFF938ASS.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF735ZAF bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF617RGJ 458321 ENCODE Processing Pipeline 8cac4106daffa8126ed01b4bce2ec89f https://www.encodeproject.org/files/ENCFF735ZAF/@@download/ENCFF735ZAF.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF921STO bigBed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF996PWC 13431282 ENCODE Processing Pipeline c3cd7899d745b33523c091784ffd9a06 https://www.encodeproject.org/files/ENCFF921STO/@@download/ENCFF921STO.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF843RFX bigWig signal p-value ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF652VQH 2260380634 ENCODE Processing Pipeline 22aebb3b3656486ef459e59a4da6c06d https://www.encodeproject.org/files/ENCFF843RFX/@@download/ENCFF843RFX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF619GVS bigWig signal p-value ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF660BOQ 2039144388 ENCODE Processing Pipeline b292a46e7b51e81e957761412ae6544a https://www.encodeproject.org/files/ENCFF619GVS/@@download/ENCFF619GVS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF452YHL bigWig fold change over control ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF652VQH 2278827483 ENCODE Processing Pipeline ab6b1c7b240cf937b13242f6ac7de519 https://www.encodeproject.org/files/ENCFF452YHL/@@download/ENCFF452YHL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF490VGQ bed narrowPeak conservative idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF408KRF, ENCFF419RSJ, ENCFF542DOS, ENCFF790KQT 68215 ENCODE Processing Pipeline cc3d46c152edfbd00cafc53d27d32a11 https://www.encodeproject.org/files/ENCFF490VGQ/@@download/ENCFF490VGQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF549ODQ bed narrowPeak optimal idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF408KRF, ENCFF419RSJ, ENCFF542DOS, ENCFF790KQT 174100 ENCODE Processing Pipeline a79aed59e1975675283345d59a89b250 https://www.encodeproject.org/files/ENCFF549ODQ/@@download/ENCFF549ODQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF542DOS bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF660BOQ 7104483 ENCODE Processing Pipeline 850ef9ed63657b4aee6013d1ee55e0ae https://www.encodeproject.org/files/ENCFF542DOS/@@download/ENCFF542DOS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF094FHA bigBed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF542DOS 12958560 ENCODE Processing Pipeline a1f187301adbfa609d1f5c9585b3a3d0 https://www.encodeproject.org/files/ENCFF094FHA/@@download/ENCFF094FHA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF058ELG bigBed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF408KRF 13114954 ENCODE Processing Pipeline ac672eaba934f5f3fe2a1115137592dc https://www.encodeproject.org/files/ENCFF058ELG/@@download/ENCFF058ELG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF454MYN bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF490VGQ 246073 ENCODE Processing Pipeline cc9e3a10259be2b6d665feace523284c https://www.encodeproject.org/files/ENCFF454MYN/@@download/ENCFF454MYN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF613IGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF549ODQ 469418 ENCODE Processing Pipeline c5ebbf42c68a6539adea65b64220a315 https://www.encodeproject.org/files/ENCFF613IGE/@@download/ENCFF613IGE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF926LHR bigWig fold change over control ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF660BOQ 1780488879 ENCODE Processing Pipeline 30d25227879fe78e3b264346779cabfc https://www.encodeproject.org/files/ENCFF926LHR/@@download/ENCFF926LHR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF909MSA bigWig signal p-value ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF652VQH, ENCFF660BOQ 2598417258 ENCODE Processing Pipeline 9be3ba4ac3117fa416ded2b5ac003566 https://www.encodeproject.org/files/ENCFF909MSA/@@download/ENCFF909MSA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF702MMI bigBed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF790KQT 13421591 ENCODE Processing Pipeline 1238415c49e8cca948def6fc0fa53abb https://www.encodeproject.org/files/ENCFF702MMI/@@download/ENCFF702MMI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF576FUZ bigWig fold change over control ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF652VQH, ENCFF660BOQ 2610832164 ENCODE Processing Pipeline 0db26d3b3da867718086ba60b9fd5b74 https://www.encodeproject.org/files/ENCFF576FUZ/@@download/ENCFF576FUZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF790KQT bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF652VQH 7168910 ENCODE Processing Pipeline 6ea915449b112d010549b2e6ef7d2267 https://www.encodeproject.org/files/ENCFF790KQT/@@download/ENCFF790KQT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF408KRF bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF652VQH, ENCFF660BOQ 7280308 ENCODE Processing Pipeline d2c5670a6e54004e11372c29f42ec502 https://www.encodeproject.org/files/ENCFF408KRF/@@download/ENCFF408KRF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF000WVZ bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 1 585019763 Michael Snyder, Stanford 3629ea8938c8527241321ce20e004f82 https://www.encodeproject.org/files/ENCFF000WVZ/@@download/ENCFF000WVZ.bam hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WWA bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 1 540128810 Michael Snyder, Stanford 67a03ef89aa36ba3a2b11e5729fb0da2 https://www.encodeproject.org/files/ENCFF000WWA/@@download/ENCFF000WWA.bam hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WWB bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VHH 3141802 Michael Snyder, Stanford 3e57f8ca97cbdaa53e73e534e15fd502 https://www.encodeproject.org/files/ENCFF000WWB/@@download/ENCFF000WWB.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WWC fastq reads ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1194395156 Michael Snyder, Stanford 39ea0cdb4bae02840eb17df34fb96178 https://www.encodeproject.org/files/ENCFF000WWC/@@download/ENCFF000WWC.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WWE fastq reads ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1128178920 Michael Snyder, Stanford 12b78e7dc7b3e3acd4512f8095e1ab75 https://www.encodeproject.org/files/ENCFF000WWE/@@download/ENCFF000WWE.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WWG bigWig signal ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 426468468 Michael Snyder, Stanford db49923379268288cc5fde10e8359f2d https://www.encodeproject.org/files/ENCFF000WWG/@@download/ENCFF000WWG.bigWig hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VHH bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1431408 Michael Snyder, Stanford d35d1196ccda97f52c3c3bd8fedf499a https://www.encodeproject.org/files/ENCFF001VHH/@@download/ENCFF001VHH.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CRJ bed narrowPeak optimal idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 775636 ENCODE Consortium Analysis Working Group 75c727b2ab18086c2d82e11bf53d3266 https://www.encodeproject.org/files/ENCFF002CRJ/@@download/ENCFF002CRJ.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF311DCP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CRJ 1693387 ENCODE Consortium c9da3645a9405e3c69405e225c7af7fc https://www.encodeproject.org/files/ENCFF311DCP/@@download/ENCFF311DCP.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF537OYL bam unfiltered alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WWE, ENCFF643CGH 1300516983 ENCODE Processing Pipeline c69e521a6e505e5ee5e539053f2097ed https://www.encodeproject.org/files/ENCFF537OYL/@@download/ENCFF537OYL.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF732IVC bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WWE, ENCFF643CGH 874998410 ENCODE Processing Pipeline 81dcd4a52cb134e1a5445881ce0198bb https://www.encodeproject.org/files/ENCFF732IVC/@@download/ENCFF732IVC.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF016NAV bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WWC, ENCFF643CGH 932694569 ENCODE Processing Pipeline 118090a062419985ea4fd7c9b37cc4f9 https://www.encodeproject.org/files/ENCFF016NAV/@@download/ENCFF016NAV.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF311VXK bam unfiltered alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WWC, ENCFF643CGH 1362530155 ENCODE Processing Pipeline bdb8d87fa16d9fac39c5f07997c90ca1 https://www.encodeproject.org/files/ENCFF311VXK/@@download/ENCFF311VXK.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF077WVN bam unfiltered alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WWC, ENCFF807MUK 1357338691 ENCODE Processing Pipeline 2a2bb250f48d3706f89bf6620e578736 https://www.encodeproject.org/files/ENCFF077WVN/@@download/ENCFF077WVN.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF037DLB bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WWE, ENCFF807MUK 875421669 ENCODE Processing Pipeline ded9ecf4bbd3cfafdbb6cd94a045c941 https://www.encodeproject.org/files/ENCFF037DLB/@@download/ENCFF037DLB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF717TTQ bam unfiltered alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WWE, ENCFF807MUK 1295043708 ENCODE Processing Pipeline 02291b86f8f1efa5d6ca3c541684e4b1 https://www.encodeproject.org/files/ENCFF717TTQ/@@download/ENCFF717TTQ.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF138HXG bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WWC, ENCFF807MUK 933112020 ENCODE Processing Pipeline f13be172e07e28b2aef770d6b2d0d751 https://www.encodeproject.org/files/ENCFF138HXG/@@download/ENCFF138HXG.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF102SOG bigWig signal p-value ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF016NAV, ENCFF513EWK 595458406 ENCODE Processing Pipeline 5afd510241dc98e0b0ca6176596abb00 https://www.encodeproject.org/files/ENCFF102SOG/@@download/ENCFF102SOG.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF755MDO bigWig signal p-value ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF732IVC 588723481 ENCODE Processing Pipeline 9e8e7dd199819a44b45bcf610b3f937b https://www.encodeproject.org/files/ENCFF755MDO/@@download/ENCFF755MDO.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF667YWV bigWig signal p-value ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF016NAV, ENCFF513EWK, ENCFF732IVC 741773209 ENCODE Processing Pipeline 0e24ff20d36c58c79020a11950387d55 https://www.encodeproject.org/files/ENCFF667YWV/@@download/ENCFF667YWV.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF025QWP bigWig fold change over control ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF016NAV, ENCFF513EWK 496637557 ENCODE Processing Pipeline f9f26cf5dfc74de92be8234bc6d93636 https://www.encodeproject.org/files/ENCFF025QWP/@@download/ENCFF025QWP.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF480ASE bigWig fold change over control ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF732IVC 469276494 ENCODE Processing Pipeline 2e08b46f6db710a7153948ec28fff17f https://www.encodeproject.org/files/ENCFF480ASE/@@download/ENCFF480ASE.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF377SDG bigWig fold change over control ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF016NAV, ENCFF513EWK, ENCFF732IVC 798172333 ENCODE Processing Pipeline cbb9ec90e2ea2a54904f0e924578335f https://www.encodeproject.org/files/ENCFF377SDG/@@download/ENCFF377SDG.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF859MPO bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF732IVC 5187884 ENCODE Processing Pipeline fc3abf39b804d21be9a66cd271e8647b https://www.encodeproject.org/files/ENCFF859MPO/@@download/ENCFF859MPO.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF430AKT bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF016NAV, ENCFF513EWK, ENCFF732IVC 5968601 ENCODE Processing Pipeline 235860149bacd56bf9cab7fb939e6d61 https://www.encodeproject.org/files/ENCFF430AKT/@@download/ENCFF430AKT.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF489RSK bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF016NAV, ENCFF513EWK 5158212 ENCODE Processing Pipeline f4e58609cae7a143ba63819b8e08c196 https://www.encodeproject.org/files/ENCFF489RSK/@@download/ENCFF489RSK.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF151RJB bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF859MPO 11367247 ENCODE Processing Pipeline 12a8bd04144336736001abe817c18be3 https://www.encodeproject.org/files/ENCFF151RJB/@@download/ENCFF151RJB.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF973SKI bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF489RSK 11347096 ENCODE Processing Pipeline 24c256a49b4bf89b759a276756dae5ed https://www.encodeproject.org/files/ENCFF973SKI/@@download/ENCFF973SKI.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF569XYA bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF430AKT 11651586 ENCODE Processing Pipeline 14e143dcfbdbf48770afffd7e3057b94 https://www.encodeproject.org/files/ENCFF569XYA/@@download/ENCFF569XYA.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF879MMQ bed narrowPeak conservative idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF430AKT, ENCFF489RSK, ENCFF859MPO 628361 ENCODE Processing Pipeline 4e9d1cd7eeab436b9641f1050a199c07 https://www.encodeproject.org/files/ENCFF879MMQ/@@download/ENCFF879MMQ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF755ENQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF879MMQ 1043632 ENCODE Processing Pipeline da63ea0a46383261ac1658356966b260 https://www.encodeproject.org/files/ENCFF755ENQ/@@download/ENCFF755ENQ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF933WSP bed narrowPeak optimal idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF430AKT, ENCFF489RSK, ENCFF859MPO 630931 ENCODE Processing Pipeline 5ebac12c98db6c043f748f28ade91ff1 https://www.encodeproject.org/files/ENCFF933WSP/@@download/ENCFF933WSP.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF202JUZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF933WSP 1045367 ENCODE Processing Pipeline eb421edda353c0e0ea063cbc8f111417 https://www.encodeproject.org/files/ENCFF202JUZ/@@download/ENCFF202JUZ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF507WIE bigWig signal p-value ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF138HXG, ENCFF599MVB 583358555 ENCODE Processing Pipeline 4a596d83bf87e1af28ec26a6f29a5e70 https://www.encodeproject.org/files/ENCFF507WIE/@@download/ENCFF507WIE.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF585QTK bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF902CAT 11347012 ENCODE Processing Pipeline 8bc996331c7fa62e1abe0574d923f176 https://www.encodeproject.org/files/ENCFF585QTK/@@download/ENCFF585QTK.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF144EAX bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF080SVL 11367918 ENCODE Processing Pipeline 7e69ea9586c016d16ee20bdb242314a4 https://www.encodeproject.org/files/ENCFF144EAX/@@download/ENCFF144EAX.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF375ITL bigWig signal p-value ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF037DLB, ENCFF599MVB 562960509 ENCODE Processing Pipeline 61c95da6d66d91abfc5882f832cc4751 https://www.encodeproject.org/files/ENCFF375ITL/@@download/ENCFF375ITL.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF080SVL bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF037DLB, ENCFF599MVB 5189979 ENCODE Processing Pipeline 076f2ec7359b5e403e5bc6d534780373 https://www.encodeproject.org/files/ENCFF080SVL/@@download/ENCFF080SVL.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF964BYN bed narrowPeak optimal idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF080SVL, ENCFF180SZJ, ENCFF902CAT 639247 ENCODE Processing Pipeline cca4fd168c13d68f7e9751c2a7a43c7c https://www.encodeproject.org/files/ENCFF964BYN/@@download/ENCFF964BYN.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF193GRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF964BYN 1057473 ENCODE Processing Pipeline 982b5accc550e74c0239f51ea3f3280d https://www.encodeproject.org/files/ENCFF193GRD/@@download/ENCFF193GRD.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF054ZBK bigWig signal p-value ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF037DLB, ENCFF138HXG, ENCFF599MVB 742306158 ENCODE Processing Pipeline c4335a5d313191682c655ddf9a60c8da https://www.encodeproject.org/files/ENCFF054ZBK/@@download/ENCFF054ZBK.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF029STL bigWig fold change over control ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF037DLB, ENCFF599MVB 467069657 ENCODE Processing Pipeline 8ff374958fc9a6d31e690e0ec9757b4d https://www.encodeproject.org/files/ENCFF029STL/@@download/ENCFF029STL.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF065NEK bigWig fold change over control ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF037DLB, ENCFF138HXG, ENCFF599MVB 807439656 ENCODE Processing Pipeline cdb7c7b812dce1031c8ddf5adb406a7d https://www.encodeproject.org/files/ENCFF065NEK/@@download/ENCFF065NEK.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF362EQO bigBed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF180SZJ 11649282 ENCODE Processing Pipeline 8de4d69c8fa7ac0f850bd7f8b4d47f90 https://www.encodeproject.org/files/ENCFF362EQO/@@download/ENCFF362EQO.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF435SVU bigWig fold change over control ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF138HXG, ENCFF599MVB 501631503 ENCODE Processing Pipeline 7788f582238556c057a81c9a57f8b4e2 https://www.encodeproject.org/files/ENCFF435SVU/@@download/ENCFF435SVU.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF902CAT bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF138HXG, ENCFF599MVB 5160091 ENCODE Processing Pipeline ad3aaa9c1dc132c5833b11faf7921238 https://www.encodeproject.org/files/ENCFF902CAT/@@download/ENCFF902CAT.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF180SZJ bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF037DLB, ENCFF138HXG, ENCFF599MVB 5970212 ENCODE Processing Pipeline f519808e87ba4f6af0303f9d078a66f4 https://www.encodeproject.org/files/ENCFF180SZJ/@@download/ENCFF180SZJ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF703JVS bed narrowPeak conservative idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF080SVL, ENCFF180SZJ, ENCFF902CAT 626810 ENCODE Processing Pipeline b0ebd4bf10df29282933bb294dcb6b34 https://www.encodeproject.org/files/ENCFF703JVS/@@download/ENCFF703JVS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF645KDQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF703JVS 1041527 ENCODE Processing Pipeline 9dfc1c5a2d9fe5be03710e28ca2f1f9b https://www.encodeproject.org/files/ENCFF645KDQ/@@download/ENCFF645KDQ.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PPA bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PPM 742142532 Richard Myers, HAIB 5cf5074e753cffcf8d4659afac0961e1 https://www.encodeproject.org/files/ENCFF000PPA/@@download/ENCFF000PPA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPB bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PPQ 808429180 Richard Myers, HAIB 011ece3ee3d38d8f32e7bb9c1bcac8e2 https://www.encodeproject.org/files/ENCFF000PPB/@@download/ENCFF000PPB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPD bigBed broadPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHI 340550 Richard Myers, HAIB 98eccfc990582b0b82b253272b7e83bf https://www.encodeproject.org/files/ENCFF000PPD/@@download/ENCFF000PPD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPE bigBed broadPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHJ 671287 Richard Myers, HAIB a20ba0caabe41d5c16fe863309e7e1e3 https://www.encodeproject.org/files/ENCFF000PPE/@@download/ENCFF000PPE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPG bigWig raw signal ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 12541362 Richard Myers, HAIB 735a69bf98955aa6d556acd1d29a7a03 https://www.encodeproject.org/files/ENCFF000PPG/@@download/ENCFF000PPG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPH bigWig raw signal ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 35563268 Richard Myers, HAIB 15ae32ce08322b5b6e4166aaa9169c34 https://www.encodeproject.org/files/ENCFF000PPH/@@download/ENCFF000PPH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPM fastq reads ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1034032891 Richard Myers, HAIB c7ac554e436df63f213430706a521aa8 https://www.encodeproject.org/files/ENCFF000PPM/@@download/ENCFF000PPM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF000PPQ fastq reads ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1396879713 Richard Myers, HAIB cc259275d0b9203cd1d22408c88f13ea https://www.encodeproject.org/files/ENCFF000PPQ/@@download/ENCFF000PPQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POH/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001UHI bed broadPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 1 159504 Richard Myers, HAIB 72518824716d4948cd0ec3e4c582a385 https://www.encodeproject.org/files/ENCFF001UHI/@@download/ENCFF001UHI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001UHJ bed broadPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 1 406650 Richard Myers, HAIB e811f4a573c6ceafeac9301d5592b86b https://www.encodeproject.org/files/ENCFF001UHJ/@@download/ENCFF001UHJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF002CKZ bed narrowPeak optimal idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 378584 ENCODE Consortium Analysis Working Group 664cfd5f0deaa3414bb50c28fe2ec980 https://www.encodeproject.org/files/ENCFF002CKZ/@@download/ENCFF002CKZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient replicate concordance missing control alignments ENCFF166HAS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKZ 802797 ENCODE Consortium 34ee2b170c14143b7b3ae5062596d6a8 https://www.encodeproject.org/files/ENCFF166HAS/@@download/ENCFF166HAS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF990BLX bam unfiltered alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPM, ENCFF643CGH 1255485246 ENCODE Processing Pipeline d779ae931bed13d718f1ed7b6a77fdb5 https://www.encodeproject.org/files/ENCFF990BLX/@@download/ENCFF990BLX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF333LDV bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPM, ENCFF643CGH 509766898 ENCODE Processing Pipeline b20c6fb5f5cb5dd71a8a4f12549a7e1e https://www.encodeproject.org/files/ENCFF333LDV/@@download/ENCFF333LDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF892EXU bam unfiltered alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PPQ, ENCFF643CGH 1849633762 ENCODE Processing Pipeline b0f2967b50eaa5ae198f7ee71b5b66e7 https://www.encodeproject.org/files/ENCFF892EXU/@@download/ENCFF892EXU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF199GHD bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PPQ, ENCFF643CGH 1036280843 ENCODE Processing Pipeline d8162b11739b12a38c2a9d284d58904c https://www.encodeproject.org/files/ENCFF199GHD/@@download/ENCFF199GHD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF815HWQ bam unfiltered alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPM, ENCFF807MUK 1251210703 ENCODE Processing Pipeline 65a7fd366bfbde02fa217e50b8cbbd01 https://www.encodeproject.org/files/ENCFF815HWQ/@@download/ENCFF815HWQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF881TVG bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPM, ENCFF807MUK 510268191 ENCODE Processing Pipeline 13d0fa62d53998834f6c1965e151d407 https://www.encodeproject.org/files/ENCFF881TVG/@@download/ENCFF881TVG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF192KLO bam unfiltered alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PPQ, ENCFF807MUK 1839499206 ENCODE Processing Pipeline 27ff825c1ff6c111635186f9b91cd7aa https://www.encodeproject.org/files/ENCFF192KLO/@@download/ENCFF192KLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF300XQD bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PPQ, ENCFF807MUK 1037084632 ENCODE Processing Pipeline 3ca78b4b3c3399f14d00d81319467a12 https://www.encodeproject.org/files/ENCFF300XQD/@@download/ENCFF300XQD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF835BIS bigWig signal p-value ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF333LDV 474966558 ENCODE Processing Pipeline acc6f358e3f0da492598d13f0d1d7bfb https://www.encodeproject.org/files/ENCFF835BIS/@@download/ENCFF835BIS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF559LIZ bigWig signal p-value ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF199GHD 672658749 ENCODE Processing Pipeline c95039b36b39058c7016edf2b25a8c18 https://www.encodeproject.org/files/ENCFF559LIZ/@@download/ENCFF559LIZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF008TRI bigWig signal p-value ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199GHD, ENCFF333LDV 705389289 ENCODE Processing Pipeline 50e960ef070569ff2d7f59fb8863057f https://www.encodeproject.org/files/ENCFF008TRI/@@download/ENCFF008TRI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF764PYK bigWig fold change over control ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF333LDV 292741408 ENCODE Processing Pipeline ad1e62bce9d2141d6e55d7597fba6784 https://www.encodeproject.org/files/ENCFF764PYK/@@download/ENCFF764PYK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF714IJK bigWig fold change over control ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF199GHD 526908425 ENCODE Processing Pipeline 97639c133892aa909453e96fa366f733 https://www.encodeproject.org/files/ENCFF714IJK/@@download/ENCFF714IJK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF174EJM bigWig fold change over control ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199GHD, ENCFF333LDV 699282215 ENCODE Processing Pipeline c59eb825a3c9f2f36de901b086b015dc https://www.encodeproject.org/files/ENCFF174EJM/@@download/ENCFF174EJM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF062HBO bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF333LDV 4680336 ENCODE Processing Pipeline 855723d9bb5597f3b7903150282335de https://www.encodeproject.org/files/ENCFF062HBO/@@download/ENCFF062HBO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF944QJD bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF199GHD 5430578 ENCODE Processing Pipeline 01255282514bfdc3a6c29e9683e50150 https://www.encodeproject.org/files/ENCFF944QJD/@@download/ENCFF944QJD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF376OXL bigBed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF944QJD 11252048 ENCODE Processing Pipeline f27044af1fb077ab4e52d1b9611c18e3 https://www.encodeproject.org/files/ENCFF376OXL/@@download/ENCFF376OXL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF318HTQ bigBed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF702PPD 11407604 ENCODE Processing Pipeline 8ac6c9864defe6bf2da6f711b997d138 https://www.encodeproject.org/files/ENCFF318HTQ/@@download/ENCFF318HTQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF141JYN bed narrowPeak conservative idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF062HBO, ENCFF419RSJ, ENCFF702PPD, ENCFF944QJD 205705 ENCODE Processing Pipeline bfb68048658856898e454bdae4c43192 https://www.encodeproject.org/files/ENCFF141JYN/@@download/ENCFF141JYN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF257ERZ bigBed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF062HBO 10874242 ENCODE Processing Pipeline 033666cbd94e9da77e5f5368dd2d326e https://www.encodeproject.org/files/ENCFF257ERZ/@@download/ENCFF257ERZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF171MQS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF141JYN 435489 ENCODE Processing Pipeline b19f936e6ae0fa53ebd435e9d11fab06 https://www.encodeproject.org/files/ENCFF171MQS/@@download/ENCFF171MQS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF702PPD bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF199GHD, ENCFF333LDV 5887854 ENCODE Processing Pipeline 726431d10d2e9e072d654e2a76bcf869 https://www.encodeproject.org/files/ENCFF702PPD/@@download/ENCFF702PPD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF105TFM bed narrowPeak optimal idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF062HBO, ENCFF419RSJ, ENCFF702PPD, ENCFF944QJD 433780 ENCODE Processing Pipeline 438b625ba5eff85195b33b51c82ec7fc https://www.encodeproject.org/files/ENCFF105TFM/@@download/ENCFF105TFM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF740NNN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105TFM 748888 ENCODE Processing Pipeline 18c9b091bd46e7628b57fe4e1d411910 https://www.encodeproject.org/files/ENCFF740NNN/@@download/ENCFF740NNN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF568FIR bigWig signal p-value ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 476611315 ENCODE Processing Pipeline 762a268f2fa97ef1d05658607448d44d https://www.encodeproject.org/files/ENCFF568FIR/@@download/ENCFF568FIR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF946KOH bigWig fold change over control ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV 526382554 ENCODE Processing Pipeline ee840f6f6ccc23a662e13f08108d1fae https://www.encodeproject.org/files/ENCFF946KOH/@@download/ENCFF946KOH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF484TML bigWig signal p-value ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 752406505 ENCODE Processing Pipeline 37b3f350a193029de9f435a0429ecf4a https://www.encodeproject.org/files/ENCFF484TML/@@download/ENCFF484TML.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF535CVU bigBed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF976ZDJ 10845908 ENCODE Processing Pipeline 51caffa0d94d77e086cddce1510927ec https://www.encodeproject.org/files/ENCFF535CVU/@@download/ENCFF535CVU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF054HKQ bigWig fold change over control ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 293344836 ENCODE Processing Pipeline 639fc63ae8007f50bd076e6298135391 https://www.encodeproject.org/files/ENCFF054HKQ/@@download/ENCFF054HKQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF679VQP bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV 5433003 ENCODE Processing Pipeline abb6c315b415a8830ef75ed1309c7a41 https://www.encodeproject.org/files/ENCFF679VQP/@@download/ENCFF679VQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF915JCV bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 5890383 ENCODE Processing Pipeline 62e2459a1ae0f9c52336f409b9dd77cc https://www.encodeproject.org/files/ENCFF915JCV/@@download/ENCFF915JCV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF202DCW bigBed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF915JCV 11401434 ENCODE Processing Pipeline a031276ff1ce47e02a481af97b03fe22 https://www.encodeproject.org/files/ENCFF202DCW/@@download/ENCFF202DCW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF964JXI bed narrowPeak optimal idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF679VQP, ENCFF915JCV, ENCFF976ZDJ 425321 ENCODE Processing Pipeline d540c903680e4b4ac7aea04e684324a5 https://www.encodeproject.org/files/ENCFF964JXI/@@download/ENCFF964JXI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF810LIF bigWig signal p-value ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV 723685610 ENCODE Processing Pipeline ae1482ee5858f0e0ce05247eed6500cb https://www.encodeproject.org/files/ENCFF810LIF/@@download/ENCFF810LIF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF069VLE bigWig fold change over control ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 692325368 ENCODE Processing Pipeline 2adf6f5427782cab4f2cc31f7e21c971 https://www.encodeproject.org/files/ENCFF069VLE/@@download/ENCFF069VLE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF150XKW bigBed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF679VQP 11245015 ENCODE Processing Pipeline d21bdb2e3c803948da6e80aefb68e308 https://www.encodeproject.org/files/ENCFF150XKW/@@download/ENCFF150XKW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF799DNN bed narrowPeak conservative idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF679VQP, ENCFF915JCV, ENCFF976ZDJ 205833 ENCODE Processing Pipeline 602c162f9c1e563f6b46ab84253bce4e https://www.encodeproject.org/files/ENCFF799DNN/@@download/ENCFF799DNN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF976ZDJ bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 4715135 ENCODE Processing Pipeline d285161d03f747e315842948f5b89f3d https://www.encodeproject.org/files/ENCFF976ZDJ/@@download/ENCFF976ZDJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF145AUL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF799DNN 434620 ENCODE Processing Pipeline 48175fdb5a6fdaba7321735fe74e2256 https://www.encodeproject.org/files/ENCFF145AUL/@@download/ENCFF145AUL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF071UJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF964JXI 737230 ENCODE Processing Pipeline fad198538703c76393a5eb6dde939a44 https://www.encodeproject.org/files/ENCFF071UJQ/@@download/ENCFF071UJQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001HYH bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HYS 498717503 John Stamatoyannopoulos, UW 3d137b810c3324a95d2f905558787c91 https://www.encodeproject.org/files/ENCFF001HYH/@@download/ENCFF001HYH.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYI bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYT 528316608 John Stamatoyannopoulos, UW 767aee433dd2fdaac25236cc03e73cbc https://www.encodeproject.org/files/ENCFF001HYI/@@download/ENCFF001HYI.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYJ bigBed broadPeak hotspots ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XUB 2560883 John Stamatoyannopoulos, UW 590935040c2031b2a132cd1a5e765f2b https://www.encodeproject.org/files/ENCFF001HYJ/@@download/ENCFF001HYJ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYK bigBed broadPeak hotspots ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XUD 3784317 John Stamatoyannopoulos, UW 9bd926f5dc948b3cddc36159242c5b84 https://www.encodeproject.org/files/ENCFF001HYK/@@download/ENCFF001HYK.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYL bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XUC 788772 John Stamatoyannopoulos, UW 9ed987aaadb1df4e49ea3ee98cd9bbe4 https://www.encodeproject.org/files/ENCFF001HYL/@@download/ENCFF001HYL.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYM bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XUE 705475 John Stamatoyannopoulos, UW b5d32b064e3cfef521a02dd1ac60638a https://www.encodeproject.org/files/ENCFF001HYM/@@download/ENCFF001HYM.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYN bigWig raw signal ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HYH 110993870 John Stamatoyannopoulos, UW 6a6582d027b639249610720bd00873f6 https://www.encodeproject.org/files/ENCFF001HYN/@@download/ENCFF001HYN.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYP bigWig raw signal ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYI 113340299 John Stamatoyannopoulos, UW e7321a1a79944a0b4922ff672876f517 https://www.encodeproject.org/files/ENCFF001HYP/@@download/ENCFF001HYP.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYS fastq reads ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 607432693 John Stamatoyannopoulos, UW 76807100c661a36cebe35262744db160 https://www.encodeproject.org/files/ENCFF001HYS/@@download/ENCFF001HYS.fastq.gz Illumina Genome Analyzer /files/ENCFF001HZB/ released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001HYT fastq reads ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 650879555 John Stamatoyannopoulos, UW 548ce0c100f7f4d0a3d25e0de6c39ad1 https://www.encodeproject.org/files/ENCFF001HYT/@@download/ENCFF001HYT.fastq.gz Illumina Genome Analyzer /files/ENCFF001HZB/ released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001XUB bed broadPeak hotspots ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HYH 1636655 John Stamatoyannopoulos, UW 2a0df09a35b705237351ae481aa82077 https://www.encodeproject.org/files/ENCFF001XUB/@@download/ENCFF001XUB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001XUC bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HYH 519810 John Stamatoyannopoulos, UW d6148e5d95de79bc574b39101563b597 https://www.encodeproject.org/files/ENCFF001XUC/@@download/ENCFF001XUC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001XUD bed broadPeak hotspots ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYI 2648282 John Stamatoyannopoulos, UW 56b0a7d57f0a88add4b635ac3a765d18 https://www.encodeproject.org/files/ENCFF001XUD/@@download/ENCFF001XUD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF001XUE bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYI 455440 John Stamatoyannopoulos, UW a60c161e74780cafa7169540c23ee93d https://www.encodeproject.org/files/ENCFF001XUE/@@download/ENCFF001XUE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF002DDT bed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HYH, ENCFF001HYI 641662 ENCODE Consortium Analysis Working Group 290f42297b4c6b46ff5158f43a51da47 https://www.encodeproject.org/files/ENCFF002DDT/@@download/ENCFF002DDT.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF192ZSU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DDT 1300307 ENCODE Consortium 12a955d0e5be3145291de48ce9cead71 https://www.encodeproject.org/files/ENCFF192ZSU/@@download/ENCFF192ZSU.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF113LQX bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HYT, ENCFF643CGH 422746833 ENCODE Processing Pipeline ec23c7751c102f74c0094d7963b1a996 https://www.encodeproject.org/files/ENCFF113LQX/@@download/ENCFF113LQX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF815EOF bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HYS, ENCFF643CGH 405039614 ENCODE Processing Pipeline bf181e172224a18bad7b3d105038bc05 https://www.encodeproject.org/files/ENCFF815EOF/@@download/ENCFF815EOF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF471BGP bam unfiltered alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HYT, ENCFF643CGH 745066421 ENCODE Processing Pipeline 6903a674ff6bada5152e1a1aa317f564 https://www.encodeproject.org/files/ENCFF471BGP/@@download/ENCFF471BGP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF553KZD bam unfiltered alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HYS, ENCFF643CGH 689068663 ENCODE Processing Pipeline b6e4383943613787175a7a78caad3efe https://www.encodeproject.org/files/ENCFF553KZD/@@download/ENCFF553KZD.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF236EOM bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HYT, ENCFF807MUK 423047672 ENCODE Processing Pipeline 5ca0c4eb1c949cf44b5849ea391cb5ea https://www.encodeproject.org/files/ENCFF236EOM/@@download/ENCFF236EOM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF780RBD bam unfiltered alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HYT, ENCFF807MUK 742763480 ENCODE Processing Pipeline a4450214a6fd04f46cab874a35457e4b https://www.encodeproject.org/files/ENCFF780RBD/@@download/ENCFF780RBD.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF377SSW bam unfiltered alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HYS, ENCFF807MUK 686708249 ENCODE Processing Pipeline 4b9819b7d44b6450ec7739d3d7fe33cc https://www.encodeproject.org/files/ENCFF377SSW/@@download/ENCFF377SSW.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF720CUU bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HYS, ENCFF807MUK 405268192 ENCODE Processing Pipeline 0650cb0ed3f6f5b081c9a40fac1b13d3 https://www.encodeproject.org/files/ENCFF720CUU/@@download/ENCFF720CUU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF058USY bigWig signal p-value ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF070KUR, ENCFF113LQX 275958766 ENCODE Processing Pipeline 0a0bd2dcf6d580b1bac4780a29f984e4 https://www.encodeproject.org/files/ENCFF058USY/@@download/ENCFF058USY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF863QEN bigWig signal p-value ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF070KUR, ENCFF113LQX, ENCFF815EOF 310496769 ENCODE Processing Pipeline 6c9875d0b11ce2704a6a85ca061a911a https://www.encodeproject.org/files/ENCFF863QEN/@@download/ENCFF863QEN.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF294KGH bigWig signal p-value ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF070KUR, ENCFF815EOF 257268430 ENCODE Processing Pipeline 647fabadff3a61e8e943c9a63b438301 https://www.encodeproject.org/files/ENCFF294KGH/@@download/ENCFF294KGH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF102ERM bigWig fold change over control ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF070KUR, ENCFF815EOF 184984410 ENCODE Processing Pipeline 8030e1cee0b030e8b4c5858bf7102519 https://www.encodeproject.org/files/ENCFF102ERM/@@download/ENCFF102ERM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF927VEJ bigWig fold change over control ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF070KUR, ENCFF113LQX 185691478 ENCODE Processing Pipeline 607f1bebd526563e5d5ff2331de0afae https://www.encodeproject.org/files/ENCFF927VEJ/@@download/ENCFF927VEJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF385WCR bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF070KUR, ENCFF815EOF 3922023 ENCODE Processing Pipeline 0ca16734c0213b85838c366cdc462a81 https://www.encodeproject.org/files/ENCFF385WCR/@@download/ENCFF385WCR.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF645TQU bigWig fold change over control ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF070KUR, ENCFF113LQX, ENCFF815EOF 335851852 ENCODE Processing Pipeline abf56e165839f079b27dda268d989ed9 https://www.encodeproject.org/files/ENCFF645TQU/@@download/ENCFF645TQU.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF300WWD bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF070KUR, ENCFF113LQX 3990718 ENCODE Processing Pipeline e017e265298c12b3bb55e2c13364b468 https://www.encodeproject.org/files/ENCFF300WWD/@@download/ENCFF300WWD.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF897FQC bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF070KUR, ENCFF113LQX, ENCFF815EOF 4198330 ENCODE Processing Pipeline eafc2782db8268824c0ebf62b1e8bcba https://www.encodeproject.org/files/ENCFF897FQC/@@download/ENCFF897FQC.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF710KRU bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF385WCR 9760942 ENCODE Processing Pipeline 2c33c50eb2439bfb74b3933ff0b1d828 https://www.encodeproject.org/files/ENCFF710KRU/@@download/ENCFF710KRU.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF011OYO bed narrowPeak conservative idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF300WWD, ENCFF385WCR, ENCFF419RSJ, ENCFF897FQC 469054 ENCODE Processing Pipeline e711ef8a020c6a5f690a23946c79dbd9 https://www.encodeproject.org/files/ENCFF011OYO/@@download/ENCFF011OYO.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF638IKA bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF300WWD 9880268 ENCODE Processing Pipeline 14e3c157892592712777a980861eb677 https://www.encodeproject.org/files/ENCFF638IKA/@@download/ENCFF638IKA.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF280XCH bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF897FQC 10395525 ENCODE Processing Pipeline edba1b8a8416d9243eabd262b6e678ba https://www.encodeproject.org/files/ENCFF280XCH/@@download/ENCFF280XCH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF077ZKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF011OYO 850411 ENCODE Processing Pipeline e1416c40211779335c948c3bd4d782e7 https://www.encodeproject.org/files/ENCFF077ZKJ/@@download/ENCFF077ZKJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF695MEK bed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF300WWD, ENCFF385WCR, ENCFF419RSJ, ENCFF897FQC 490170 ENCODE Processing Pipeline 79f930fc5699a74526aa59f17a48bd03 https://www.encodeproject.org/files/ENCFF695MEK/@@download/ENCFF695MEK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF263ECH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF695MEK 882028 ENCODE Processing Pipeline 87d4b1e388eba12a40a431a450c51a90 https://www.encodeproject.org/files/ENCFF263ECH/@@download/ENCFF263ECH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF200KQQ bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF236EOM, ENCFF681UDE, ENCFF720CUU 4183298 ENCODE Processing Pipeline b892f15ec274912371f6b0836f339ec6 https://www.encodeproject.org/files/ENCFF200KQQ/@@download/ENCFF200KQQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF016EUX bed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF200KQQ, ENCFF381HQF, ENCFF658PRB 489043 ENCODE Processing Pipeline 3b4175ee806d5059eb5007e4fa19891b https://www.encodeproject.org/files/ENCFF016EUX/@@download/ENCFF016EUX.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF256SYA bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF381HQF 9897872 ENCODE Processing Pipeline 3c7428b39934491dbf6ad4a3582ab716 https://www.encodeproject.org/files/ENCFF256SYA/@@download/ENCFF256SYA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF211YGB bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF200KQQ 10366092 ENCODE Processing Pipeline aef01b5a521030ad76b6e61b64d39bd6 https://www.encodeproject.org/files/ENCFF211YGB/@@download/ENCFF211YGB.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF752WFP bed narrowPeak conservative idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF200KQQ, ENCFF381HQF, ENCFF658PRB 462236 ENCODE Processing Pipeline 7bc497ea00ce4b92f879fcce86513581 https://www.encodeproject.org/files/ENCFF752WFP/@@download/ENCFF752WFP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF219HOH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF016EUX 877991 ENCODE Processing Pipeline 030185f7d0b22f228b31ccc5024d73a5 https://www.encodeproject.org/files/ENCFF219HOH/@@download/ENCFF219HOH.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF992RQG bigWig fold change over control ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF681UDE, ENCFF720CUU 185313689 ENCODE Processing Pipeline 9f43b86ceecae95c9f104833e684618a https://www.encodeproject.org/files/ENCFF992RQG/@@download/ENCFF992RQG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF658PRB bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF681UDE, ENCFF720CUU 3859097 ENCODE Processing Pipeline 7e18aacfd30ad12f732a1a305f7f28a3 https://www.encodeproject.org/files/ENCFF658PRB/@@download/ENCFF658PRB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF381HQF bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF236EOM, ENCFF681UDE 4002859 ENCODE Processing Pipeline bcd5a89d0a3d1dd94e8e36f75c21292c https://www.encodeproject.org/files/ENCFF381HQF/@@download/ENCFF381HQF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF806FTK bigBed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF658PRB 7893170 ENCODE Processing Pipeline 081c98bbd3bc16abfff87d42af33d17f https://www.encodeproject.org/files/ENCFF806FTK/@@download/ENCFF806FTK.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF704HSY bigWig signal p-value ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF236EOM, ENCFF681UDE 264485906 ENCODE Processing Pipeline 3c0385b66677a0aa29a89f33c0dc29b2 https://www.encodeproject.org/files/ENCFF704HSY/@@download/ENCFF704HSY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF970DOB bigWig signal p-value ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF236EOM, ENCFF681UDE, ENCFF720CUU 310644013 ENCODE Processing Pipeline 03f6f3b85ad71da40c1d721108676f99 https://www.encodeproject.org/files/ENCFF970DOB/@@download/ENCFF970DOB.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF993DPK bigWig fold change over control ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF236EOM, ENCFF681UDE 183508445 ENCODE Processing Pipeline 0a2399863a991a3d295ac6ab18a658e1 https://www.encodeproject.org/files/ENCFF993DPK/@@download/ENCFF993DPK.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF757SKH bigWig fold change over control ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF236EOM, ENCFF681UDE, ENCFF720CUU 336260944 ENCODE Processing Pipeline 49813c859bda26bc70d176c87d5a9dca https://www.encodeproject.org/files/ENCFF757SKH/@@download/ENCFF757SKH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF077EJE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF752WFP 839090 ENCODE Processing Pipeline d03665b237f73e319a20e7c6c5ce7dc4 https://www.encodeproject.org/files/ENCFF077EJE/@@download/ENCFF077EJE.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF154UKX bigWig signal p-value ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF681UDE, ENCFF720CUU 310779189 ENCODE Processing Pipeline e2900f4758bd47bb5af24b8665f1652f https://www.encodeproject.org/files/ENCFF154UKX/@@download/ENCFF154UKX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF000YOW fastq reads ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 654223052 Sherman Weissman, Yale f3a1fb60b75e3b633ef8dff7f4b9574f https://www.encodeproject.org/files/ENCFF000YOW/@@download/ENCFF000YOW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YOY fastq reads ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 593406344 Sherman Weissman, Yale 6585ccd8b3af4e843440f9e251278e52 https://www.encodeproject.org/files/ENCFF000YOY/@@download/ENCFF000YOY.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZN bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOW 848983675 Sherman Weissman, Yale 5321dcccc580b5ad82f618ef1ad8c309 https://www.encodeproject.org/files/ENCFF000YZN/@@download/ENCFF000YZN.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZO bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOY 771477520 Sherman Weissman, Yale 60875820357603b55b91c165714bcb93 https://www.encodeproject.org/files/ENCFF000YZO/@@download/ENCFF000YZO.bam hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZP bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOS 103087 Sherman Weissman, Yale 55fb96df3f67048551bc286dc9efb799 https://www.encodeproject.org/files/ENCFF000YZP/@@download/ENCFF000YZP.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YZQ bigWig signal ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 412996834 Sherman Weissman, Yale bc0bf6e496e3cb1f955fe4aba0066c04 https://www.encodeproject.org/files/ENCFF000YZQ/@@download/ENCFF000YZQ.bigWig hg19 archived control low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOS bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 6887 Sherman Weissman, Yale 3ee906e3f2b296a935a77fbe0cadbcd4 https://www.encodeproject.org/files/ENCFF001VOS/@@download/ENCFF001VOS.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CYB bed narrowPeak optimal idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 40339 ENCODE Consortium Analysis Working Group 1718fd972f2325347a55591909f5d6da https://www.encodeproject.org/files/ENCFF002CYB/@@download/ENCFF002CYB.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF024UQS bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYB 173439 ENCODE Consortium 52e88da23c1a15b3236d142354ca8c05 https://www.encodeproject.org/files/ENCFF024UQS/@@download/ENCFF024UQS.bigBed hg19 archived control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF581MWG bam unfiltered alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOY, ENCFF643CGH 774075302 ENCODE Processing Pipeline 08e4e284d847d1370f567d71676be289 https://www.encodeproject.org/files/ENCFF581MWG/@@download/ENCFF581MWG.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF463LMJ bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOY, ENCFF643CGH 297505948 ENCODE Processing Pipeline ca3e661fee7e4464b51a128972cdae99 https://www.encodeproject.org/files/ENCFF463LMJ/@@download/ENCFF463LMJ.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF473CUL bam unfiltered alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOW, ENCFF643CGH 852818409 ENCODE Processing Pipeline c7de386f16284fbb58b8810d977cada7 https://www.encodeproject.org/files/ENCFF473CUL/@@download/ENCFF473CUL.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF479UPB bam unfiltered alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOY, ENCFF807MUK 772076460 ENCODE Processing Pipeline 9a8e114fd78e7c6de06f2d7e8aa07cc8 https://www.encodeproject.org/files/ENCFF479UPB/@@download/ENCFF479UPB.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF465UCG bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOY, ENCFF807MUK 297874800 ENCODE Processing Pipeline 4da05d8fc8d1ef48310a5a81d6373ba0 https://www.encodeproject.org/files/ENCFF465UCG/@@download/ENCFF465UCG.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF403WNR bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOW, ENCFF643CGH 324701596 ENCODE Processing Pipeline 04d0312b2d3e82d850c3fa7cf7cec30d https://www.encodeproject.org/files/ENCFF403WNR/@@download/ENCFF403WNR.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF764OHG bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOW, ENCFF807MUK 325114367 ENCODE Processing Pipeline da1a08a467db23ad3de385cc750d1191 https://www.encodeproject.org/files/ENCFF764OHG/@@download/ENCFF764OHG.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF524MMM bam unfiltered alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOW, ENCFF807MUK 849799807 ENCODE Processing Pipeline 025b8603617926dc96132a1268bed6be https://www.encodeproject.org/files/ENCFF524MMM/@@download/ENCFF524MMM.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF215GNU bigWig signal p-value ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF764OHG 236107967 ENCODE Processing Pipeline 62f4b5a0eb7cdb2e7bfeedd87dd8aea0 https://www.encodeproject.org/files/ENCFF215GNU/@@download/ENCFF215GNU.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF369GRE bigWig signal p-value ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF403WNR, ENCFF767FSP 232397932 ENCODE Processing Pipeline c5229fe3ed884dff15cd1a58ec4e4a92 https://www.encodeproject.org/files/ENCFF369GRE/@@download/ENCFF369GRE.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF325ULG bigWig signal p-value ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF465UCG, ENCFF650MOB 267570140 ENCODE Processing Pipeline 89dd53b45bd246c521d100526ee7ba68 https://www.encodeproject.org/files/ENCFF325ULG/@@download/ENCFF325ULG.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF622FBS bigWig signal p-value ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF463LMJ, ENCFF767FSP 287969776 ENCODE Processing Pipeline 1e1afbed14e856d9a61ea89f7c90d314 https://www.encodeproject.org/files/ENCFF622FBS/@@download/ENCFF622FBS.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF535LOZ bigWig signal p-value ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF465UCG, ENCFF650MOB, ENCFF764OHG 293790861 ENCODE Processing Pipeline 2a857ebe80babc6c3cb25e08cbf1462e https://www.encodeproject.org/files/ENCFF535LOZ/@@download/ENCFF535LOZ.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF773ESK bigWig fold change over control ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF463LMJ, ENCFF767FSP 135052850 ENCODE Processing Pipeline c7e289cf1a2ae15c9a5267b85b368c4d https://www.encodeproject.org/files/ENCFF773ESK/@@download/ENCFF773ESK.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF622FPS bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF465UCG, ENCFF650MOB, ENCFF764OHG 4185597 ENCODE Processing Pipeline cae15d972cebb57bdfb84f52d5b0076f https://www.encodeproject.org/files/ENCFF622FPS/@@download/ENCFF622FPS.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF106TZC bigWig fold change over control ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF403WNR, ENCFF767FSP 139013379 ENCODE Processing Pipeline 3ce67248cd7cafe873c7834338697a97 https://www.encodeproject.org/files/ENCFF106TZC/@@download/ENCFF106TZC.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF627HUR bigWig fold change over control ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF465UCG, ENCFF650MOB 136424137 ENCODE Processing Pipeline 2a637f45e5448555930b82c8e703291a https://www.encodeproject.org/files/ENCFF627HUR/@@download/ENCFF627HUR.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF361XNT bigWig fold change over control ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF764OHG 143882123 ENCODE Processing Pipeline 177e9c15ff33b7840370a5e842033489 https://www.encodeproject.org/files/ENCFF361XNT/@@download/ENCFF361XNT.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF695SDJ bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF764OHG 2226729 ENCODE Processing Pipeline e5fa53b68f9680bfff30fcb11a3997e2 https://www.encodeproject.org/files/ENCFF695SDJ/@@download/ENCFF695SDJ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF026AVN bigWig signal p-value ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF403WNR, ENCFF463LMJ, ENCFF767FSP 294797097 ENCODE Processing Pipeline 6c19a294f8311058edb8f7c593dd2fa3 https://www.encodeproject.org/files/ENCFF026AVN/@@download/ENCFF026AVN.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF364CEV bigWig fold change over control ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF403WNR, ENCFF463LMJ, ENCFF767FSP 257931676 ENCODE Processing Pipeline da8b6683be6af964e12eaf2056dc90fa https://www.encodeproject.org/files/ENCFF364CEV/@@download/ENCFF364CEV.bigWig GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF490WRP bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF465UCG, ENCFF650MOB 2645766 ENCODE Processing Pipeline b4c91a9f9340d89c0975816c7cdab774 https://www.encodeproject.org/files/ENCFF490WRP/@@download/ENCFF490WRP.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF785LIV bigWig fold change over control ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF465UCG, ENCFF650MOB, ENCFF764OHG 257440382 ENCODE Processing Pipeline 48259cbb20e32b0945b0543228a76c55 https://www.encodeproject.org/files/ENCFF785LIV/@@download/ENCFF785LIV.bigWig hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF400RQY bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF904TMD 4814411 ENCODE Processing Pipeline f55da1f92f1ecd71ba28b6d18a7370ae https://www.encodeproject.org/files/ENCFF400RQY/@@download/ENCFF400RQY.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF068CSN bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF403WNR, ENCFF463LMJ, ENCFF767FSP 4184621 ENCODE Processing Pipeline 7284864293e4e8004eac4fd81634ea18 https://www.encodeproject.org/files/ENCFF068CSN/@@download/ENCFF068CSN.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF098NHJ bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF490WRP 6543461 ENCODE Processing Pipeline 65880d4437d17613ffab3b46379af5a3 https://www.encodeproject.org/files/ENCFF098NHJ/@@download/ENCFF098NHJ.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF861RPG bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF622FPS 10294672 ENCODE Processing Pipeline 86348c0bbc7439980635c01c10b1bf2c https://www.encodeproject.org/files/ENCFF861RPG/@@download/ENCFF861RPG.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF595BKT bed narrowPeak conservative idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF490WRP, ENCFF622FPS, ENCFF695SDJ 18246 ENCODE Processing Pipeline abb69af55b20a7cbe28eb01eb54002a3 https://www.encodeproject.org/files/ENCFF595BKT/@@download/ENCFF595BKT.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF904TMD bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF403WNR, ENCFF767FSP 2221464 ENCODE Processing Pipeline 33e36cc30c30eb5cb3276dc9882d7824 https://www.encodeproject.org/files/ENCFF904TMD/@@download/ENCFF904TMD.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF920DKX bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF463LMJ, ENCFF767FSP 2635949 ENCODE Processing Pipeline 9bfc992fbbff0406222f1eb01565fe95 https://www.encodeproject.org/files/ENCFF920DKX/@@download/ENCFF920DKX.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF372WXA bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF695SDJ 4818192 ENCODE Processing Pipeline 2df25cd32b51820178cfb762c86d5ca1 https://www.encodeproject.org/files/ENCFF372WXA/@@download/ENCFF372WXA.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF365VTM bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF920DKX 6536291 ENCODE Processing Pipeline 11265b0a0c877142310815293682fae1 https://www.encodeproject.org/files/ENCFF365VTM/@@download/ENCFF365VTM.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF290HTJ bed narrowPeak optimal idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF490WRP, ENCFF622FPS, ENCFF695SDJ 25619 ENCODE Processing Pipeline a9aa20b61b6e61db5f4a49be039c6f10 https://www.encodeproject.org/files/ENCFF290HTJ/@@download/ENCFF290HTJ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF030CBS bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF595BKT 73576 ENCODE Processing Pipeline 82f2a4cda3d9860cda73398a1fe7108e https://www.encodeproject.org/files/ENCFF030CBS/@@download/ENCFF030CBS.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF181PHR bed narrowPeak conservative idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF068CSN, ENCFF419RSJ, ENCFF904TMD, ENCFF920DKX 18501 ENCODE Processing Pipeline 12e61019930f5ebf56452dcef5e1e09d https://www.encodeproject.org/files/ENCFF181PHR/@@download/ENCFF181PHR.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF657VDG bigBed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF068CSN 10297771 ENCODE Processing Pipeline e31b21d3b42cdfb37d8c8dd43f785e36 https://www.encodeproject.org/files/ENCFF657VDG/@@download/ENCFF657VDG.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF646MXG bed narrowPeak optimal idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF068CSN, ENCFF419RSJ, ENCFF904TMD, ENCFF920DKX 26514 ENCODE Processing Pipeline f89b2c4ecdac0570b786a0bd15c3ad2d https://www.encodeproject.org/files/ENCFF646MXG/@@download/ENCFF646MXG.bed.gz GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF532CKD bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF290HTJ 99215 ENCODE Processing Pipeline 23828b6327d296cc7edc3ce5e104be2d https://www.encodeproject.org/files/ENCFF532CKD/@@download/ENCFF532CKD.bigBed hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF744IYR bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF181PHR 74035 ENCODE Processing Pipeline 7c432e84896f3efaabcf978a0a497d6d https://www.encodeproject.org/files/ENCFF744IYR/@@download/ENCFF744IYR.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF681ZDG bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF646MXG 100344 ENCODE Processing Pipeline be6d23b40f05a653f6375fe83b0a5d0a https://www.encodeproject.org/files/ENCFF681ZDG/@@download/ENCFF681ZDG.bigBed GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000XIJ bam alignments ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XIM 339209912 Kevin Struhl, HMS 1f452f3d521dd745d68658b9f23e470a https://www.encodeproject.org/files/ENCFF000XIJ/@@download/ENCFF000XIJ.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIK bam alignments ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XIO 264270925 Kevin Struhl, HMS b89bd5da6bc03e66549325cef7dcf566 https://www.encodeproject.org/files/ENCFF000XIK/@@download/ENCFF000XIK.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIL bigBed narrowPeak peaks ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIW 686294 Kevin Struhl, HMS 2ff6718066c4001326c689cc9eaf55e0 https://www.encodeproject.org/files/ENCFF000XIL/@@download/ENCFF000XIL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XIM fastq reads ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 643691433 Kevin Struhl, HMS 43712aa48118f570638149961e6cbf5e https://www.encodeproject.org/files/ENCFF000XIM/@@download/ENCFF000XIM.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XIO fastq reads ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 569828257 Kevin Struhl, HMS 74d2820d96b4528386108149aca72172 https://www.encodeproject.org/files/ENCFF000XIO/@@download/ENCFF000XIO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XIR bigWig signal ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 250270182 Kevin Struhl, HMS 9330400a7e939bf040cea5f59e93e43c https://www.encodeproject.org/files/ENCFF000XIR/@@download/ENCFF000XIR.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001VIW bed narrowPeak peaks ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 259460 Kevin Struhl, HMS 3acd468d4c1319043c797eb775c09659 https://www.encodeproject.org/files/ENCFF001VIW/@@download/ENCFF001VIW.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CSU bed narrowPeak optimal idr thresholded peaks ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 145549 ENCODE Consortium Analysis Working Group 0648b23890a30a1df457a5ccd1b72a85 https://www.encodeproject.org/files/ENCFF002CSU/@@download/ENCFF002CSU.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF775KRE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSU 389770 ENCODE Consortium cbbe56f1f9e03e03846b7e3c8d0685ce https://www.encodeproject.org/files/ENCFF775KRE/@@download/ENCFF775KRE.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000ZAW bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 555963223 Michael Snyder, Stanford 75ad6bcef1b63c05e936a0cd2c0d925d https://www.encodeproject.org/files/ENCFF000ZAW/@@download/ENCFF000ZAW.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZAX bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPA 1838155 Michael Snyder, Stanford 9b90a07b5e17fdb2da3848640c1f3dcb https://www.encodeproject.org/files/ENCFF000ZAX/@@download/ENCFF000ZAX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZAY fastq reads ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1089528817 Michael Snyder, Stanford bd6158c2a6497f67731000c8624ef614 https://www.encodeproject.org/files/ENCFF000ZAY/@@download/ENCFF000ZAY.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBA fastq reads ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 984042749 Michael Snyder, Stanford 5df641f16848db69fe7b77fa5763498a https://www.encodeproject.org/files/ENCFF000ZBA/@@download/ENCFF000ZBA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBB bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 497484529 Michael Snyder, Stanford 22051f374e26e5c359c0c9239b5c4044 https://www.encodeproject.org/files/ENCFF000ZBB/@@download/ENCFF000ZBB.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZBD bigWig signal ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 402772518 Michael Snyder, Stanford a07a4de374a051d69225cbc665355c3c https://www.encodeproject.org/files/ENCFF000ZBD/@@download/ENCFF000ZBD.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VPA bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 694993 Michael Snyder, Stanford 1a5b0eb668f8ebaa2382eefc709dc80f https://www.encodeproject.org/files/ENCFF001VPA/@@download/ENCFF001VPA.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CYI bed narrowPeak optimal idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 132380 ENCODE Consortium Analysis Working Group 7179d23bbb19655b2530129332aab3e8 https://www.encodeproject.org/files/ENCFF002CYI/@@download/ENCFF002CYI.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF812RYR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYI 401366 ENCODE Consortium b6a010d1f914728343856e7d091ac23a https://www.encodeproject.org/files/ENCFF812RYR/@@download/ENCFF812RYR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF769NEJ bam unfiltered alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBA, ENCFF643CGH 1162269418 ENCODE Processing Pipeline a0981d41f1ba989b32f7205b4bb6d10b https://www.encodeproject.org/files/ENCFF769NEJ/@@download/ENCFF769NEJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF964COC bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBA, ENCFF643CGH 777997097 ENCODE Processing Pipeline ade6e3186fd79d0f672ff140df956a95 https://www.encodeproject.org/files/ENCFF964COC/@@download/ENCFF964COC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF397AQJ bam unfiltered alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZAY, ENCFF643CGH 1251616369 ENCODE Processing Pipeline 1e4c39bc752003a046be0ca3e39363cc https://www.encodeproject.org/files/ENCFF397AQJ/@@download/ENCFF397AQJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946HWT bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZAY, ENCFF643CGH 853885397 ENCODE Processing Pipeline 34c60cf470f247bbe8c7fd659b7c2ae7 https://www.encodeproject.org/files/ENCFF946HWT/@@download/ENCFF946HWT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF853HTM bam unfiltered alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBA, ENCFF807MUK 1157067199 ENCODE Processing Pipeline 2d22d3f45917dfff4f3b12ba98cbdea9 https://www.encodeproject.org/files/ENCFF853HTM/@@download/ENCFF853HTM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF645ZSW bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBA, ENCFF807MUK 778551098 ENCODE Processing Pipeline fc305d51601094e0213617d79188ef4e https://www.encodeproject.org/files/ENCFF645ZSW/@@download/ENCFF645ZSW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF376MQL bam unfiltered alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZAY, ENCFF807MUK 1244589344 ENCODE Processing Pipeline bca26856930b2e873460f04ccb38ac78 https://www.encodeproject.org/files/ENCFF376MQL/@@download/ENCFF376MQL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF676WXJ bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZAY, ENCFF807MUK 854465237 ENCODE Processing Pipeline f23a65cfceac4edd1463d9a1427eb6ae https://www.encodeproject.org/files/ENCFF676WXJ/@@download/ENCFF676WXJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550AUT bigWig signal p-value ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF645ZSW, ENCFF710NTS 455932885 ENCODE Processing Pipeline 3c9e1f9a1648489ce803fb45beb3d8d9 https://www.encodeproject.org/files/ENCFF550AUT/@@download/ENCFF550AUT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF046SKK bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF570BGF 13185308 ENCODE Processing Pipeline 8410d2041f064868bac3229b52ff0ac3 https://www.encodeproject.org/files/ENCFF046SKK/@@download/ENCFF046SKK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF570BGF bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF676WXJ, ENCFF710NTS 5126978 ENCODE Processing Pipeline 3dbc54e6e80b80390a000d4502766d78 https://www.encodeproject.org/files/ENCFF570BGF/@@download/ENCFF570BGF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF041WFQ bigWig fold change over control ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF676WXJ, ENCFF710NTS 432535639 ENCODE Processing Pipeline 9ef9fac66d5ddade481c8fd6b6d78e64 https://www.encodeproject.org/files/ENCFF041WFQ/@@download/ENCFF041WFQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF350TPD bigWig fold change over control ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF645ZSW, ENCFF676WXJ, ENCFF710NTS 687840686 ENCODE Processing Pipeline 4122ec2326267bb9f90f832bdf72160b https://www.encodeproject.org/files/ENCFF350TPD/@@download/ENCFF350TPD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF079WSL bigWig signal p-value ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF676WXJ, ENCFF710NTS 474639922 ENCODE Processing Pipeline f9bfd26afd777b081bccd37a085557f7 https://www.encodeproject.org/files/ENCFF079WSL/@@download/ENCFF079WSL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF029WBH bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF645ZSW, ENCFF676WXJ, ENCFF710NTS 6005378 ENCODE Processing Pipeline fa7e9ed24a7267861d7c2a5a0676614c https://www.encodeproject.org/files/ENCFF029WBH/@@download/ENCFF029WBH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF169QNX bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF148FBK 13014790 ENCODE Processing Pipeline d409a8b8e0686e316f1afd87c7d6e754 https://www.encodeproject.org/files/ENCFF169QNX/@@download/ENCFF169QNX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF531SEM bed narrowPeak conservative idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF029WBH, ENCFF148FBK, ENCFF570BGF 96529 ENCODE Processing Pipeline c9dd62cbe23924e6a27e0c5ec0ce92fe https://www.encodeproject.org/files/ENCFF531SEM/@@download/ENCFF531SEM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514QSC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF531SEM 224842 ENCODE Processing Pipeline c32cb0ed40777facc0b55cb4422b3f01 https://www.encodeproject.org/files/ENCFF514QSC/@@download/ENCFF514QSC.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF048OBR bed narrowPeak optimal idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF029WBH, ENCFF148FBK, ENCFF570BGF 116170 ENCODE Processing Pipeline af849a8e32cce9ef81c5076327bc52fa https://www.encodeproject.org/files/ENCFF048OBR/@@download/ENCFF048OBR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF779GLP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF048OBR 301609 ENCODE Processing Pipeline 21c081745133b1102f8a3003e0dd671a https://www.encodeproject.org/files/ENCFF779GLP/@@download/ENCFF779GLP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF912CSE bigWig signal p-value ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF645ZSW, ENCFF676WXJ, ENCFF710NTS 559384070 ENCODE Processing Pipeline c81a21d14ef754259ecf3c8fccbc98ab https://www.encodeproject.org/files/ENCFF912CSE/@@download/ENCFF912CSE.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF148FBK bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF645ZSW, ENCFF710NTS 5143978 ENCODE Processing Pipeline dcb2ca543a2f81c300abae00838438a4 https://www.encodeproject.org/files/ENCFF148FBK/@@download/ENCFF148FBK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF399ZJA bigWig fold change over control ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF645ZSW, ENCFF710NTS 378055832 ENCODE Processing Pipeline 977cb32d65fef3ae2ecaf5418b11a070 https://www.encodeproject.org/files/ENCFF399ZJA/@@download/ENCFF399ZJA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF167OYF bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF029WBH 13279194 ENCODE Processing Pipeline 183b740c3ad8b7dd8d057288301c22ca https://www.encodeproject.org/files/ENCFF167OYF/@@download/ENCFF167OYF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF002KZG bigWig signal p-value ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF946HWT 559204205 ENCODE Processing Pipeline 972d93ea80661bec656b95c99f6b6340 https://www.encodeproject.org/files/ENCFF002KZG/@@download/ENCFF002KZG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF055TLK bigWig signal p-value ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF946HWT, ENCFF964COC 559070496 ENCODE Processing Pipeline 952a68fa7716aaf615753144b98d107f https://www.encodeproject.org/files/ENCFF055TLK/@@download/ENCFF055TLK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946NVU bigWig signal p-value ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF964COC 462245841 ENCODE Processing Pipeline c00bca4609248f2c03bef16ef8efdf13 https://www.encodeproject.org/files/ENCFF946NVU/@@download/ENCFF946NVU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF137HJL bigWig fold change over control ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF946HWT 430629835 ENCODE Processing Pipeline 1d9afd606ad11412a2fddb94c4f27c4c https://www.encodeproject.org/files/ENCFF137HJL/@@download/ENCFF137HJL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF211ZZS bigWig fold change over control ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF964COC 373664997 ENCODE Processing Pipeline 1ffbdb7a8fc7d6c532f14ce6a91f8c64 https://www.encodeproject.org/files/ENCFF211ZZS/@@download/ENCFF211ZZS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF012SWD bigWig fold change over control ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF946HWT, ENCFF964COC 689147637 ENCODE Processing Pipeline c6c5190dc1dcb5a45971f9d52b497ff3 https://www.encodeproject.org/files/ENCFF012SWD/@@download/ENCFF012SWD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF172HUV bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF946HWT 5048555 ENCODE Processing Pipeline d49981a8c968db9c6e0d3563222b6d9e https://www.encodeproject.org/files/ENCFF172HUV/@@download/ENCFF172HUV.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF140JVE bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF964COC 5129323 ENCODE Processing Pipeline 8f93783c28ddb7eb66e80634938eaa23 https://www.encodeproject.org/files/ENCFF140JVE/@@download/ENCFF140JVE.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF708TPP bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF946HWT, ENCFF964COC 5989284 ENCODE Processing Pipeline 05dcf53e8581f96009b9c03d9ce1c5aa https://www.encodeproject.org/files/ENCFF708TPP/@@download/ENCFF708TPP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF389JGN bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF172HUV 11016284 ENCODE Processing Pipeline 91a78699c10613a46c8ef841560fa0f0 https://www.encodeproject.org/files/ENCFF389JGN/@@download/ENCFF389JGN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF828HPR bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF140JVE 13008929 ENCODE Processing Pipeline e83af621f7d1e232e8b5f4d80cd9f63d https://www.encodeproject.org/files/ENCFF828HPR/@@download/ENCFF828HPR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF168HNG bigBed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF708TPP 13284232 ENCODE Processing Pipeline 167cb5a37f0f4225e0db7411c4e7e74e https://www.encodeproject.org/files/ENCFF168HNG/@@download/ENCFF168HNG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF939RXT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF117UOA 229737 ENCODE Processing Pipeline 25f897ae35d630ddc54c435763daa43b https://www.encodeproject.org/files/ENCFF939RXT/@@download/ENCFF939RXT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF117UOA bed narrowPeak conservative idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF140JVE, ENCFF172HUV, ENCFF419RSJ, ENCFF708TPP 98813 ENCODE Processing Pipeline e6913cd83fb6875729a355488118b229 https://www.encodeproject.org/files/ENCFF117UOA/@@download/ENCFF117UOA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF239WFN bed narrowPeak optimal idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF140JVE, ENCFF172HUV, ENCFF419RSJ, ENCFF708TPP 117271 ENCODE Processing Pipeline 0bb3f6845b1bbca94e1dfd27a3c65a75 https://www.encodeproject.org/files/ENCFF239WFN/@@download/ENCFF239WFN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF851XFB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF239WFN 257779 ENCODE Processing Pipeline 5a0226e6c999bef2f38efcf7dbb346f1 https://www.encodeproject.org/files/ENCFF851XFB/@@download/ENCFF851XFB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000QWA bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QWN 296756450 Richard Myers, HAIB d3e8c4d2525ac305d88c4bdf5ccbd306 https://www.encodeproject.org/files/ENCFF000QWA/@@download/ENCFF000QWA.bam hg19 archived control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000QWB bigBed broadPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UOT 253581 Richard Myers, HAIB d88e122d18a4a3330ab31a69993a699b https://www.encodeproject.org/files/ENCFF000QWB/@@download/ENCFF000QWB.bigBed hg19 archived control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000QWC bigBed broadPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UOU 460768 Richard Myers, HAIB 0b997f0062302ea4f02aebc974cbf07c https://www.encodeproject.org/files/ENCFF000QWC/@@download/ENCFF000QWC.bigBed hg19 archived control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000QWE bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QWQ 1827327964 Richard Myers, HAIB 9e482dee8bf6655bd9084caf3379207d https://www.encodeproject.org/files/ENCFF000QWE/@@download/ENCFF000QWE.bam hg19 archived control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000QWF bigWig raw signal ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 2604472 Richard Myers, HAIB b1d31dae243c6bd37aa692aa31d4bc51 https://www.encodeproject.org/files/ENCFF000QWF/@@download/ENCFF000QWF.bigWig hg19 archived control low read depth, low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000QWG bigWig raw signal ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 23625810 Richard Myers, HAIB ecedc38e133f81fac8d9dfab63914d75 https://www.encodeproject.org/files/ENCFF000QWG/@@download/ENCFF000QWG.bigWig hg19 archived control low read depth, low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000QWN fastq reads ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 222138222 Richard Myers, HAIB 008b677910ee2e1fe83451241bfc72d8 https://www.encodeproject.org/files/ENCFF000QWN/@@download/ENCFF000QWN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QVY/ released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000QWQ fastq reads ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1777581289 Richard Myers, HAIB 62b86a47ba4131a7beff5a8927107a25 https://www.encodeproject.org/files/ENCFF000QWQ/@@download/ENCFF000QWQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QVY/ released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF001UOT bed broadPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 1 138816 Richard Myers, HAIB 928dc8711472d675150549adba56b0b8 https://www.encodeproject.org/files/ENCFF001UOT/@@download/ENCFF001UOT.bed.gz hg19 archived control low read depth, low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001UOU bed broadPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 1 254388 Richard Myers, HAIB cedbf360faa0bfa79c206e505a2fc335 https://www.encodeproject.org/files/ENCFF001UOU/@@download/ENCFF001UOU.bed.gz hg19 archived control low read depth, low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CNG bed narrowPeak optimal idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 156824 ENCODE Consortium Analysis Working Group 66da916867df6e09215a4e5813b94fb9 https://www.encodeproject.org/files/ENCFF002CNG/@@download/ENCFF002CNG.bed.gz hg19 archived control low read depth, low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF901AOJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNG 478131 ENCODE Consortium 0b940549b5802709d40c0e58c6de47d7 https://www.encodeproject.org/files/ENCFF901AOJ/@@download/ENCFF901AOJ.bigBed hg19 archived control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF042UTA bam unfiltered alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWN, ENCFF643CGH 313823070 ENCODE Processing Pipeline 960688ce049e572f5fe580b0764670f8 https://www.encodeproject.org/files/ENCFF042UTA/@@download/ENCFF042UTA.bam GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF662OCA bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWN, ENCFF643CGH 193231696 ENCODE Processing Pipeline 666bef890e29124999d639b35ccd7e71 https://www.encodeproject.org/files/ENCFF662OCA/@@download/ENCFF662OCA.bam GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF961BAD bam unfiltered alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QWQ, ENCFF643CGH 1994356066 ENCODE Processing Pipeline 768e8eef6934310d741b699db699fedf https://www.encodeproject.org/files/ENCFF961BAD/@@download/ENCFF961BAD.bam GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF608EGH bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QWQ, ENCFF643CGH 1368350703 ENCODE Processing Pipeline 8030a0c0863d8565c3c0a17ea5be1420 https://www.encodeproject.org/files/ENCFF608EGH/@@download/ENCFF608EGH.bam GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF741GJT bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWN, ENCFF807MUK 193322961 ENCODE Processing Pipeline 6348049b1599e5d8d7a368e0e8612e46 https://www.encodeproject.org/files/ENCFF741GJT/@@download/ENCFF741GJT.bam hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF109FVN bam unfiltered alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWN, ENCFF807MUK 313157470 ENCODE Processing Pipeline d5396aa20fd1b89499ce718af3b244ad https://www.encodeproject.org/files/ENCFF109FVN/@@download/ENCFF109FVN.bam hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF085BDG bam unfiltered alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QWQ, ENCFF807MUK 1989938838 ENCODE Processing Pipeline 9ab4e84363f5d5e37aad7a57babb39ac https://www.encodeproject.org/files/ENCFF085BDG/@@download/ENCFF085BDG.bam hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF697SEU bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QWQ, ENCFF807MUK 1368908191 ENCODE Processing Pipeline 2c2a31ed1b96db0d6a7f35b31f3dd4e2 https://www.encodeproject.org/files/ENCFF697SEU/@@download/ENCFF697SEU.bam hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF471CGQ bigWig signal p-value ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421EKC, ENCFF608EGH 303701973 ENCODE Processing Pipeline b089f5aa69012eb0e55eb2c248dafefa https://www.encodeproject.org/files/ENCFF471CGQ/@@download/ENCFF471CGQ.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF460MLD bigWig fold change over control ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF421EKC, ENCFF662OCA 96704824 ENCODE Processing Pipeline 042c8511cdd3712b3f897b13e8b1bf53 https://www.encodeproject.org/files/ENCFF460MLD/@@download/ENCFF460MLD.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF410HET bigWig fold change over control ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421EKC, ENCFF608EGH 482817238 ENCODE Processing Pipeline 9069034812c8e2c01883d7cc42ffd015 https://www.encodeproject.org/files/ENCFF410HET/@@download/ENCFF410HET.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF921WIP bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF421EKC, ENCFF608EGH, ENCFF662OCA 5697247 ENCODE Processing Pipeline ed0e3572cd49bcad51ccc4f9776d74df https://www.encodeproject.org/files/ENCFF921WIP/@@download/ENCFF921WIP.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF577TJG bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF421EKC, ENCFF662OCA 1888187 ENCODE Processing Pipeline 4252e638e8d06fa110b0fd0b48b686ed https://www.encodeproject.org/files/ENCFF577TJG/@@download/ENCFF577TJG.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF839YOZ bigWig signal p-value ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF421EKC, ENCFF662OCA 259339715 ENCODE Processing Pipeline 65a62e9c3c50158fccfb9e01749af613 https://www.encodeproject.org/files/ENCFF839YOZ/@@download/ENCFF839YOZ.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF229TWL bigWig signal p-value ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF421EKC, ENCFF608EGH, ENCFF662OCA 316755820 ENCODE Processing Pipeline 314e9e7d809e1c94d345b8d151e943f7 https://www.encodeproject.org/files/ENCFF229TWL/@@download/ENCFF229TWL.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF320AML bigBed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF921WIP 13084866 ENCODE Processing Pipeline 22b5b9a92e20e76fd158a48cd4e4bc6c https://www.encodeproject.org/files/ENCFF320AML/@@download/ENCFF320AML.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF991PHN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF213CYP 612677 ENCODE Processing Pipeline f00705dc9cea74b7df812b38232eab44 https://www.encodeproject.org/files/ENCFF991PHN/@@download/ENCFF991PHN.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF660MGV bigBed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF577TJG 3730785 ENCODE Processing Pipeline 6ad2ec15f0f7c831e27ae007d1a82737 https://www.encodeproject.org/files/ENCFF660MGV/@@download/ENCFF660MGV.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF425MFX bigBed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF172STQ 13029584 ENCODE Processing Pipeline 4ea8280dd37f090715e73bab618bcce0 https://www.encodeproject.org/files/ENCFF425MFX/@@download/ENCFF425MFX.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF937ONI bigWig fold change over control ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF421EKC, ENCFF608EGH, ENCFF662OCA 550324768 ENCODE Processing Pipeline 3ef1420e55c6e173aeaeb934b98667a4 https://www.encodeproject.org/files/ENCFF937ONI/@@download/ENCFF937ONI.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF172STQ bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF421EKC, ENCFF608EGH 5492322 ENCODE Processing Pipeline 3bb7881525fd01375d7d8b349ce763c4 https://www.encodeproject.org/files/ENCFF172STQ/@@download/ENCFF172STQ.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF886SMI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF735TTP 486254 ENCODE Processing Pipeline a41f899993c50d6c86cd9fcdf18e9880 https://www.encodeproject.org/files/ENCFF886SMI/@@download/ENCFF886SMI.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF735TTP bed narrowPeak conservative idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF172STQ, ENCFF419RSJ, ENCFF577TJG, ENCFF921WIP 208200 ENCODE Processing Pipeline ab08671a6693d093cf52d0dacebd0ef6 https://www.encodeproject.org/files/ENCFF735TTP/@@download/ENCFF735TTP.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF213CYP bed narrowPeak optimal idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF172STQ, ENCFF419RSJ, ENCFF577TJG, ENCFF921WIP 282456 ENCODE Processing Pipeline 5c55fa6549f3b1472eeff8eacae37d9a https://www.encodeproject.org/files/ENCFF213CYP/@@download/ENCFF213CYP.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF288DPW bigWig fold change over control ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF697SEU 495895939 ENCODE Processing Pipeline 382b2e0dace50d359cbdfa2524d90cfe https://www.encodeproject.org/files/ENCFF288DPW/@@download/ENCFF288DPW.bigWig hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF882QHD bigBed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF652LUF 3806866 ENCODE Processing Pipeline a0bcf0e08129e02ae70baba8e8e2b373 https://www.encodeproject.org/files/ENCFF882QHD/@@download/ENCFF882QHD.bigBed hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF809HDE bigWig signal p-value ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF741GJT 264426730 ENCODE Processing Pipeline d28147fdca4d2b8a51ca466428b63739 https://www.encodeproject.org/files/ENCFF809HDE/@@download/ENCFF809HDE.bigWig hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF626PWK bigWig fold change over control ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041XFO, ENCFF697SEU, ENCFF741GJT 537075744 ENCODE Processing Pipeline 84a82a456eb2aad9d61398b73a278c78 https://www.encodeproject.org/files/ENCFF626PWK/@@download/ENCFF626PWK.bigWig hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF662ESD bigWig fold change over control ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF741GJT 95546169 ENCODE Processing Pipeline dd3e1f3a18a47df3244dd24b6accdee9 https://www.encodeproject.org/files/ENCFF662ESD/@@download/ENCFF662ESD.bigWig hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF854IEG bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041XFO, ENCFF697SEU, ENCFF741GJT 5667601 ENCODE Processing Pipeline e299a4c64c0f33eb5a5d11385786f17d https://www.encodeproject.org/files/ENCFF854IEG/@@download/ENCFF854IEG.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF507KUO bigWig signal p-value ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF697SEU 307363864 ENCODE Processing Pipeline 6bd8bbab2dbce988aef945d5cde9f056 https://www.encodeproject.org/files/ENCFF507KUO/@@download/ENCFF507KUO.bigWig hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF152NDL bigWig signal p-value ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041XFO, ENCFF697SEU, ENCFF741GJT 313783965 ENCODE Processing Pipeline 4f69479c7a62717feba600fdda359a01 https://www.encodeproject.org/files/ENCFF152NDL/@@download/ENCFF152NDL.bigWig hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF652LUF bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF741GJT 1938123 ENCODE Processing Pipeline d57001c9cefaa2309b6101ad50938784 https://www.encodeproject.org/files/ENCFF652LUF/@@download/ENCFF652LUF.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF911VHO bigBed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF854IEG 13066604 ENCODE Processing Pipeline 8a563b3b7e7b05b863ff0368a74817b8 https://www.encodeproject.org/files/ENCFF911VHO/@@download/ENCFF911VHO.bigBed hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF499YNQ bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF697SEU 5504698 ENCODE Processing Pipeline a86ca4eb9dd06ecdef514e8e573cbf89 https://www.encodeproject.org/files/ENCFF499YNQ/@@download/ENCFF499YNQ.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF255TQQ bigBed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF499YNQ 13039919 ENCODE Processing Pipeline d832e74c3295a91c62d30e7672379e2d https://www.encodeproject.org/files/ENCFF255TQQ/@@download/ENCFF255TQQ.bigBed hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF750BVX bed narrowPeak conservative idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF499YNQ, ENCFF652LUF, ENCFF854IEG 207063 ENCODE Processing Pipeline 8b6be01e50c504d388276bea6d02c422 https://www.encodeproject.org/files/ENCFF750BVX/@@download/ENCFF750BVX.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF389PDP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF750BVX 484357 ENCODE Processing Pipeline a28bc1c4aba92b779b2865b7249e06c4 https://www.encodeproject.org/files/ENCFF389PDP/@@download/ENCFF389PDP.bigBed hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF070SAY bed narrowPeak optimal idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF499YNQ, ENCFF652LUF, ENCFF854IEG 277003 ENCODE Processing Pipeline 1a8073f1f951fdd5f174cb43a8608abf https://www.encodeproject.org/files/ENCFF070SAY/@@download/ENCFF070SAY.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF453DNJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF070SAY 604374 ENCODE Processing Pipeline 106a097af6ede499ddcd77adbf39105c https://www.encodeproject.org/files/ENCFF453DNJ/@@download/ENCFF453DNJ.bigBed hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000WOW bam alignments ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WPB 243514244 Michael Snyder, Stanford 7946574ea00b22fe54350128531685fa https://www.encodeproject.org/files/ENCFF000WOW/@@download/ENCFF000WOW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WOX bam alignments ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WPD 192102932 Michael Snyder, Stanford c49a66d3d267f713d8c8bc494f864718 https://www.encodeproject.org/files/ENCFF000WOX/@@download/ENCFF000WOX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WOY bigBed narrowPeak peaks ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGK 697286 Michael Snyder, Stanford c2afbff7fdd08679ff1c3a96bd05b671 https://www.encodeproject.org/files/ENCFF000WOY/@@download/ENCFF000WOY.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WOZ bam alignments ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WPL 946355223 Michael Snyder, Stanford 0df1bd7a6de3a7ab60db830ce51ee62d https://www.encodeproject.org/files/ENCFF000WOZ/@@download/ENCFF000WOZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPB fastq reads ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 200295027 Michael Snyder, Stanford 416d1d57b59e5c99f358c73b6aa076ef https://www.encodeproject.org/files/ENCFF000WPB/@@download/ENCFF000WPB.fastq.gz Illumina Genome Analyzer /files/ENCFF000WON/ released biological replicates with identical biosample insufficient read length ENCFF000WPC bigWig signal ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 368553010 Michael Snyder, Stanford 6a93b6e6998a175a1c1a1ad7be137c9b https://www.encodeproject.org/files/ENCFF000WPC/@@download/ENCFF000WPC.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WPD fastq reads ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 160628342 Michael Snyder, Stanford 321ccde87e953eb1b1bfca95b9053b7a https://www.encodeproject.org/files/ENCFF000WPD/@@download/ENCFF000WPD.fastq.gz Illumina Genome Analyzer /files/ENCFF000WOO/ released biological replicates with identical biosample insufficient read length ENCFF000WPL fastq reads ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 728726375 Michael Snyder, Stanford 0032468f039d0c7b3872e3c6144c8b35 https://www.encodeproject.org/files/ENCFF000WPL/@@download/ENCFF000WPL.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VGK bed narrowPeak peaks ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 291039 Michael Snyder, Stanford b2cce8a80b732b528ea4c82c62a945f0 https://www.encodeproject.org/files/ENCFF001VGK/@@download/ENCFF001VGK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CQM bed narrowPeak optimal idr thresholded peaks ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 469278 ENCODE Consortium Analysis Working Group f0e6f91ae1ca71e1c6163fd76dbe92fd https://www.encodeproject.org/files/ENCFF002CQM/@@download/ENCFF002CQM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF218KLA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQM 1344565 ENCODE Consortium 8816ffd5fac32b19f302605363db94bd https://www.encodeproject.org/files/ENCFF218KLA/@@download/ENCFF218KLA.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZPF bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZPU 125007830 Peggy Farnham, USC 66b68ae600839465180ff2a5ed7beead https://www.encodeproject.org/files/ENCFF000ZPF/@@download/ENCFF000ZPF.bam hg19 archived control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000ZPH bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZQE 219857235 Peggy Farnham, USC 8c7a5ee8fdbae0ace53b390873ade78a https://www.encodeproject.org/files/ENCFF000ZPH/@@download/ENCFF000ZPH.bam hg19 archived control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000ZPJ bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQU 829514 Peggy Farnham, USC c38320351d400ee417a2ebe2d30e646d https://www.encodeproject.org/files/ENCFF000ZPJ/@@download/ENCFF000ZPJ.bigBed hg19 archived control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000ZPO bigWig signal ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 194769440 Peggy Farnham, USC 7f69c1d01862dc03310cf97341103e0e https://www.encodeproject.org/files/ENCFF000ZPO/@@download/ENCFF000ZPO.bigWig hg19 archived control low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000ZPU fastq reads ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 727202484 Peggy Farnham, USC 2f2e30b4595d5cc89aaa9b332cb446cf https://www.encodeproject.org/files/ENCFF000ZPU/@@download/ENCFF000ZPU.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZPM/ released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000ZQE fastq reads ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 914315696 Peggy Farnham, USC 59972272096e5a8ab2aee4c13a0afa87 https://www.encodeproject.org/files/ENCFF000ZQE/@@download/ENCFF000ZQE.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZPM/ released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF001VQU bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 354605 Peggy Farnham, USC f4bb8df57040145a3a95dfa4768ef611 https://www.encodeproject.org/files/ENCFF001VQU/@@download/ENCFF001VQU.bed.gz hg19 archived control low read depth, low read length missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CZY bed narrowPeak optimal idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 413835 ENCODE Consortium Analysis Working Group 52ba9a6d81cca9f3df09523d54362d2d https://www.encodeproject.org/files/ENCFF002CZY/@@download/ENCFF002CZY.bed.gz hg19 archived control low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF141KPH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZY 1209398 ENCODE Consortium 9121a083700fdb4a39979e0fc0f09856 https://www.encodeproject.org/files/ENCFF141KPH/@@download/ENCFF141KPH.bigBed hg19 archived control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000ZPG bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZPU 128079971 Michael Snyder, Stanford cab88391c16a4024855ebffa160a5f21 https://www.encodeproject.org/files/ENCFF000ZPG/@@download/ENCFF000ZPG.bam hg19 archived control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000ZPI bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZQE 225311540 Michael Snyder, Stanford 632f9877332e67bc2f3adaa6151085b2 https://www.encodeproject.org/files/ENCFF000ZPI/@@download/ENCFF000ZPI.bam hg19 archived control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF532UUV bam unfiltered alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPU, ENCFF643CGH 722167573 ENCODE Processing Pipeline e2175be2aaba4bc9c9d70977732ff7a2 https://www.encodeproject.org/files/ENCFF532UUV/@@download/ENCFF532UUV.bam GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF114YIF bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPU, ENCFF643CGH 224896958 ENCODE Processing Pipeline 9bfbf820dd4850b0a36dc19e5c557759 https://www.encodeproject.org/files/ENCFF114YIF/@@download/ENCFF114YIF.bam GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF522JCJ bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQE, ENCFF643CGH 427201590 ENCODE Processing Pipeline 4e25b402818aec23701e14c085c8ce18 https://www.encodeproject.org/files/ENCFF522JCJ/@@download/ENCFF522JCJ.bam GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF111YIH bam unfiltered alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQE, ENCFF643CGH 964004769 ENCODE Processing Pipeline 593e2f70e839fc2a22dbdb693a493716 https://www.encodeproject.org/files/ENCFF111YIH/@@download/ENCFF111YIH.bam GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF491VFV bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPU, ENCFF807MUK 224801979 ENCODE Processing Pipeline d8397283389670a35c4f08ea78ae7ec7 https://www.encodeproject.org/files/ENCFF491VFV/@@download/ENCFF491VFV.bam hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF494HQK bam unfiltered alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPU, ENCFF807MUK 721444207 ENCODE Processing Pipeline a36e43d81ea1bc0736d8d8b7a0d3bcf5 https://www.encodeproject.org/files/ENCFF494HQK/@@download/ENCFF494HQK.bam hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF794CLL bam unfiltered alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQE, ENCFF807MUK 962555895 ENCODE Processing Pipeline a79d5af4295447dcd5b1b55d18e90a9c https://www.encodeproject.org/files/ENCFF794CLL/@@download/ENCFF794CLL.bam hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF040WTG bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQE, ENCFF807MUK 426781854 ENCODE Processing Pipeline 672b7af54a9a265a9ebffe23d012ab68 https://www.encodeproject.org/files/ENCFF040WTG/@@download/ENCFF040WTG.bam hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF812YKR bigWig signal p-value ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF114YIF, ENCFF275RMZ 238108486 ENCODE Processing Pipeline e04d833845a4fdfc263d1799cc1b35bd https://www.encodeproject.org/files/ENCFF812YKR/@@download/ENCFF812YKR.bigWig GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF107ERG bigWig signal p-value ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF275RMZ, ENCFF522JCJ 308838642 ENCODE Processing Pipeline b35ac04e4045d263ff348d08c249746f https://www.encodeproject.org/files/ENCFF107ERG/@@download/ENCFF107ERG.bigWig GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF132NJT bigWig signal p-value ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114YIF, ENCFF275RMZ, ENCFF522JCJ 294710005 ENCODE Processing Pipeline 2637120461e51e90ab89577ed62522a7 https://www.encodeproject.org/files/ENCFF132NJT/@@download/ENCFF132NJT.bigWig GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF765IJC bigWig fold change over control ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF114YIF, ENCFF275RMZ 84035283 ENCODE Processing Pipeline 1108837ebeb43440105d920ae8d289b7 https://www.encodeproject.org/files/ENCFF765IJC/@@download/ENCFF765IJC.bigWig GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF334SVB bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF275RMZ, ENCFF522JCJ 3969374 ENCODE Processing Pipeline be25020983e165cf3bf20a8446849d5d https://www.encodeproject.org/files/ENCFF334SVB/@@download/ENCFF334SVB.bed.gz GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF701REP bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF334SVB 9695833 ENCODE Processing Pipeline 7576cf417da5dada0e614998f87a8419 https://www.encodeproject.org/files/ENCFF701REP/@@download/ENCFF701REP.bigBed GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF023HXN bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114YIF, ENCFF275RMZ, ENCFF522JCJ 5284263 ENCODE Processing Pipeline 60fd744c4e04383a67aaf0be8f515998 https://www.encodeproject.org/files/ENCFF023HXN/@@download/ENCFF023HXN.bed.gz GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF785XJQ bigWig fold change over control ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF275RMZ, ENCFF522JCJ 160576890 ENCODE Processing Pipeline 402d9db995c551eaf76bfd64b26d6357 https://www.encodeproject.org/files/ENCFF785XJQ/@@download/ENCFF785XJQ.bigWig GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF531RKT bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF954IYU 4415926 ENCODE Processing Pipeline 3df9e38b6370aef1dbd0374d57381038 https://www.encodeproject.org/files/ENCFF531RKT/@@download/ENCFF531RKT.bigBed GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF681TLD bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023HXN 12557758 ENCODE Processing Pipeline cd71f42615bf8f993acd1c603e9f218c https://www.encodeproject.org/files/ENCFF681TLD/@@download/ENCFF681TLD.bigBed GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF954IYU bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF114YIF, ENCFF275RMZ 1984566 ENCODE Processing Pipeline 21c29b23a8811464fddddd1a23a19f2d https://www.encodeproject.org/files/ENCFF954IYU/@@download/ENCFF954IYU.bed.gz GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF740KGG bigWig fold change over control ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF114YIF, ENCFF275RMZ, ENCFF522JCJ 213318100 ENCODE Processing Pipeline bed01d78bae6012b997b91b93bc39348 https://www.encodeproject.org/files/ENCFF740KGG/@@download/ENCFF740KGG.bigWig GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF681YEC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF798HCA 1174617 ENCODE Processing Pipeline 8ac5180e1d95768ae51d51130e037cab https://www.encodeproject.org/files/ENCFF681YEC/@@download/ENCFF681YEC.bigBed GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF332VET bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF352SHQ 1141880 ENCODE Processing Pipeline 4271fea4b1176c53a59fb49b503670bd https://www.encodeproject.org/files/ENCFF332VET/@@download/ENCFF332VET.bigBed GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF798HCA bed narrowPeak optimal idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023HXN, ENCFF334SVB, ENCFF419RSJ, ENCFF954IYU 532343 ENCODE Processing Pipeline bf5333624e0bfe030998cc2f37a9556d https://www.encodeproject.org/files/ENCFF798HCA/@@download/ENCFF798HCA.bed.gz GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF352SHQ bed narrowPeak conservative idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023HXN, ENCFF334SVB, ENCFF419RSJ, ENCFF954IYU 511280 ENCODE Processing Pipeline 609a5d85894f1753940c8ae8c21980f6 https://www.encodeproject.org/files/ENCFF352SHQ/@@download/ENCFF352SHQ.bed.gz GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF629KPR bigWig fold change over control ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF040WTG, ENCFF491VFV, ENCFF835ZVB 216229736 ENCODE Processing Pipeline 4c87fdb6d3d7f08675028d9d98be6428 https://www.encodeproject.org/files/ENCFF629KPR/@@download/ENCFF629KPR.bigWig hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF607FUW bigWig signal p-value ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF040WTG, ENCFF835ZVB 269219060 ENCODE Processing Pipeline 7e6dd8fd7b3dbded0d3736ca17398fb7 https://www.encodeproject.org/files/ENCFF607FUW/@@download/ENCFF607FUW.bigWig hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF442YIG bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF491VFV, ENCFF835ZVB 1981618 ENCODE Processing Pipeline fff1b6df92ff4f1efc27ece7e5dd72de https://www.encodeproject.org/files/ENCFF442YIG/@@download/ENCFF442YIG.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF939NXA bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF040WTG, ENCFF491VFV, ENCFF835ZVB 5214017 ENCODE Processing Pipeline adab3f28bcdddd9f9ad1a5b238817f05 https://www.encodeproject.org/files/ENCFF939NXA/@@download/ENCFF939NXA.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF692WEG bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF442YIG 4412001 ENCODE Processing Pipeline 4ce8e4b75cab3b8beef5de9ad877f1e8 https://www.encodeproject.org/files/ENCFF692WEG/@@download/ENCFF692WEG.bigBed hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF492KJI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF824CNK 1107874 ENCODE Processing Pipeline 69115e4a04ee24d41519661988c48750 https://www.encodeproject.org/files/ENCFF492KJI/@@download/ENCFF492KJI.bigBed hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF628MLB bigWig signal p-value ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF040WTG, ENCFF491VFV, ENCFF835ZVB 295261402 ENCODE Processing Pipeline 266d0a89191a9a774e5b0da5e867abf7 https://www.encodeproject.org/files/ENCFF628MLB/@@download/ENCFF628MLB.bigWig hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF844XZQ bigWig signal p-value ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF491VFV, ENCFF835ZVB 253939587 ENCODE Processing Pipeline e9620686c4b365a62135a70fc2b14a05 https://www.encodeproject.org/files/ENCFF844XZQ/@@download/ENCFF844XZQ.bigWig hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF384VBW bigWig fold change over control ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF491VFV, ENCFF835ZVB 84126264 ENCODE Processing Pipeline 01afa5b2a6b719a386fd1163b7ca3df6 https://www.encodeproject.org/files/ENCFF384VBW/@@download/ENCFF384VBW.bigWig hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF147JUY bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF040WTG, ENCFF835ZVB 3868060 ENCODE Processing Pipeline 54a50f80f711bd91ab8690cbd5fa0e2c https://www.encodeproject.org/files/ENCFF147JUY/@@download/ENCFF147JUY.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF601IGE bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF147JUY 9563424 ENCODE Processing Pipeline 50ecae71ef2d0bae701c39375e9ccbc7 https://www.encodeproject.org/files/ENCFF601IGE/@@download/ENCFF601IGE.bigBed hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF425VDE bigWig fold change over control ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF040WTG, ENCFF835ZVB 158995277 ENCODE Processing Pipeline 0a5f8fc6c6887ac8effdcfa9b6629a4a https://www.encodeproject.org/files/ENCFF425VDE/@@download/ENCFF425VDE.bigWig hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF416VPY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF241ZTW 1138603 ENCODE Processing Pipeline 970bb98605283b2a5cf329efa4a4ca91 https://www.encodeproject.org/files/ENCFF416VPY/@@download/ENCFF416VPY.bigBed hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF824CNK bed narrowPeak conservative idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF147JUY, ENCFF442YIG, ENCFF939NXA 492440 ENCODE Processing Pipeline 96b56c83fa18e045ebae68d6bbb309bb https://www.encodeproject.org/files/ENCFF824CNK/@@download/ENCFF824CNK.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF241ZTW bed narrowPeak optimal idr thresholded peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF147JUY, ENCFF442YIG, ENCFF939NXA 510960 ENCODE Processing Pipeline aaa34484f27d12e6052d7b1e515233b8 https://www.encodeproject.org/files/ENCFF241ZTW/@@download/ENCFF241ZTW.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF007BOM bigBed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF939NXA 12462163 ENCODE Processing Pipeline 7da1eddf375152e0b4273adc120d4c6b https://www.encodeproject.org/files/ENCFF007BOM/@@download/ENCFF007BOM.bigBed hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF000OMZ bigBed broadPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAX 70572 Richard Myers, HAIB 55d214ad953cba21c2abb44139b3351f https://www.encodeproject.org/files/ENCFF000OMZ/@@download/ENCFF000OMZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF000ONA bam alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000ONH 641143860 Richard Myers, HAIB cfa64c7b59ee854938411e6f3e5404fb https://www.encodeproject.org/files/ENCFF000ONA/@@download/ENCFF000ONA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF000ONB bigWig raw signal ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 1905695 Richard Myers, HAIB 6d15229d8c4eabbbb8cead91f5ec3102 https://www.encodeproject.org/files/ENCFF000ONB/@@download/ENCFF000ONB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF000ONH fastq reads ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 608105654 Richard Myers, HAIB 5a3120044c59fa1e33aec3aef88c3535 https://www.encodeproject.org/files/ENCFF000ONH/@@download/ENCFF000ONH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001UAX bed broadPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 1 24214 Richard Myers, HAIB 1b3ca5292990e5a8e84618495a18157d https://www.encodeproject.org/files/ENCFF001UAX/@@download/ENCFF001UAX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from ENCFF638QOI bam alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ONH, ENCFF807MUK 456453092 ENCODE Processing Pipeline 4c0963969d6ceea96220e13be1b87cb0 https://www.encodeproject.org/files/ENCFF638QOI/@@download/ENCFF638QOI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF534OAL bam unfiltered alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ONH, ENCFF643CGH 763652519 ENCODE Processing Pipeline 705f307ca3c840b6075f87221271bbf4 https://www.encodeproject.org/files/ENCFF534OAL/@@download/ENCFF534OAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF827SDJ bam unfiltered alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ONH, ENCFF807MUK 761384585 ENCODE Processing Pipeline 0c423d58aadf64a67fa733e273fadc59 https://www.encodeproject.org/files/ENCFF827SDJ/@@download/ENCFF827SDJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF974QRX bam alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ONH, ENCFF643CGH 456170230 ENCODE Processing Pipeline 17ec0524f538aebc3a5259aa88d012ff https://www.encodeproject.org/files/ENCFF974QRX/@@download/ENCFF974QRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF984OSF bigBed narrowPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140VNN 8145834 ENCODE Processing Pipeline 768d3342ebfed735228e678f6d2b6d3b https://www.encodeproject.org/files/ENCFF984OSF/@@download/ENCFF984OSF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF087VWX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140VNN, ENCFF419RSJ 12735 ENCODE Processing Pipeline 4a4d2cc1b3a86636535051ef3b4f8242 https://www.encodeproject.org/files/ENCFF087VWX/@@download/ENCFF087VWX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF380MSS bigWig signal p-value ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF638QOI 478156673 ENCODE Processing Pipeline 6e993cc904a698fd98f9eabcbbbe4943 https://www.encodeproject.org/files/ENCFF380MSS/@@download/ENCFF380MSS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF735TIA bigWig fold change over control ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF948LKH, ENCFF974QRX 251145291 ENCODE Processing Pipeline c78dbf2d1a163666413e94f3dc25f847 https://www.encodeproject.org/files/ENCFF735TIA/@@download/ENCFF735TIA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF208VDW bigWig signal p-value ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF948LKH, ENCFF974QRX 420199716 ENCODE Processing Pipeline 7160e7cf8e553f5a68b866efe3790520 https://www.encodeproject.org/files/ENCFF208VDW/@@download/ENCFF208VDW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF697OBV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF001TDO, ENCFF686BCT 13736 ENCODE Processing Pipeline ff1abe30b9a68e0b8ddf0332ba500d19 https://www.encodeproject.org/files/ENCFF697OBV/@@download/ENCFF697OBV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF140VNN bed narrowPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF948LKH, ENCFF974QRX 3710816 ENCODE Processing Pipeline 5ab701c94372952011adf68b75319d04 https://www.encodeproject.org/files/ENCFF140VNN/@@download/ENCFF140VNN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF686BCT bed narrowPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF638QOI 3736105 ENCODE Processing Pipeline db3d8e882754797b05f67bf1ef499923 https://www.encodeproject.org/files/ENCFF686BCT/@@download/ENCFF686BCT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF208LKJ bigBed narrowPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686BCT 8235614 ENCODE Processing Pipeline 1afece8f932789f6fc316678a3010f4b https://www.encodeproject.org/files/ENCFF208LKJ/@@download/ENCFF208LKJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF531SDA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF697OBV 63215 ENCODE Processing Pipeline e618c9d3bccb8ece09475018095877c3 https://www.encodeproject.org/files/ENCFF531SDA/@@download/ENCFF531SDA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF553MAY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF087VWX 62423 ENCODE Processing Pipeline e7d8dbbec196a796326d7dab5da2cfa8 https://www.encodeproject.org/files/ENCFF553MAY/@@download/ENCFF553MAY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF916NRL bigWig fold change over control ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF638QOI 256762219 ENCODE Processing Pipeline 65daeb8a261aef00876c4981828fad4f https://www.encodeproject.org/files/ENCFF916NRL/@@download/ENCFF916NRL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF000YPO fastq reads ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 766379773 Michael Snyder, Stanford f430034cb369e3faf8ed7309080d275a https://www.encodeproject.org/files/ENCFF000YPO/@@download/ENCFF000YPO.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YPQ fastq reads ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 436092289 Michael Snyder, Stanford acaee6463c6f703cc569f192301f160a https://www.encodeproject.org/files/ENCFF000YPQ/@@download/ENCFF000YPQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YWH bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPQ 586627307 Michael Snyder, Stanford 0f947c178fa421a5879d4ecdad437e46 https://www.encodeproject.org/files/ENCFF000YWH/@@download/ENCFF000YWH.bam hg19 archived low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YWI bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOF 643720 Michael Snyder, Stanford 188c693901c622c90872c6402da1ae9a https://www.encodeproject.org/files/ENCFF000YWI/@@download/ENCFF000YWI.bigBed hg19 archived low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YWJ bigWig signal ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 362848792 Michael Snyder, Stanford 8bb641fe367ca0f9275e56c0dce9dcf3 https://www.encodeproject.org/files/ENCFF000YWJ/@@download/ENCFF000YWJ.bigWig hg19 archived low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YWK bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPO 961713794 Michael Snyder, Stanford 7296ceb733c635db9ff6bcd404b3b44a https://www.encodeproject.org/files/ENCFF000YWK/@@download/ENCFF000YWK.bam hg19 archived low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF001VOF bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 268652 Michael Snyder, Stanford 0e1e4bcfbc9143d6da9027890b928bf0 https://www.encodeproject.org/files/ENCFF001VOF/@@download/ENCFF001VOF.bed.gz hg19 archived low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient read length ENCFF002CXO bed narrowPeak optimal idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 369857 ENCODE Consortium Analysis Working Group eeb2549b268c9ec76e97ce900cdb85cc https://www.encodeproject.org/files/ENCFF002CXO/@@download/ENCFF002CXO.bed.gz hg19 archived low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient read length ENCFF766AXD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXO 1091924 ENCODE Consortium 3cb85ea8310802722dc8db2303d3a862 https://www.encodeproject.org/files/ENCFF766AXD/@@download/ENCFF766AXD.bigBed hg19 archived low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF548NQU bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPO, ENCFF643CGH 479531035 ENCODE Processing Pipeline 07ff5f6f65afbb793b91846125cda5e8 https://www.encodeproject.org/files/ENCFF548NQU/@@download/ENCFF548NQU.bam GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF058BQT bigWig fold change over control ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548NQU, ENCFF914ABF, ENCFF942FFX 251675429 ENCODE Processing Pipeline 78716b7871d51452dc51c0c23a4fd5bb https://www.encodeproject.org/files/ENCFF058BQT/@@download/ENCFF058BQT.bigWig GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF730DLS bed narrowPeak optimal idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF152QPA, ENCFF419RSJ, ENCFF549VGN, ENCFF562TUU 400191 ENCODE Processing Pipeline 6703f2ed1b6467c0fb8f7151d30b608b https://www.encodeproject.org/files/ENCFF730DLS/@@download/ENCFF730DLS.bed.gz GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF914ABF bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPQ, ENCFF643CGH 270958076 ENCODE Processing Pipeline 863b197c419d60d8d92ca3bc359b10dd https://www.encodeproject.org/files/ENCFF914ABF/@@download/ENCFF914ABF.bam GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF571PEE bigWig fold change over control ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF548NQU, ENCFF942FFX 173001911 ENCODE Processing Pipeline f83ba8a384c05a32beb13a81a769d0f3 https://www.encodeproject.org/files/ENCFF571PEE/@@download/ENCFF571PEE.bigWig GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF130MGZ bam unfiltered alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPQ, ENCFF643CGH 588195189 ENCODE Processing Pipeline 59d59473c46b883e44b0f995719ea1bb https://www.encodeproject.org/files/ENCFF130MGZ/@@download/ENCFF130MGZ.bam GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF123QRZ bam unfiltered alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPO, ENCFF643CGH 869248228 ENCODE Processing Pipeline 1856e679724ff992c5a227fd9bc32a10 https://www.encodeproject.org/files/ENCFF123QRZ/@@download/ENCFF123QRZ.bam GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF883OGO bigWig signal p-value ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF914ABF, ENCFF942FFX 196449657 ENCODE Processing Pipeline 4507e93025d6eb97d15c655dced6dd81 https://www.encodeproject.org/files/ENCFF883OGO/@@download/ENCFF883OGO.bigWig GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF793TOS bigWig signal p-value ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF548NQU, ENCFF942FFX 236764917 ENCODE Processing Pipeline e36600ea6a88caa652d771b33a00db29 https://www.encodeproject.org/files/ENCFF793TOS/@@download/ENCFF793TOS.bigWig GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF152QPA bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF914ABF, ENCFF942FFX 3684784 ENCODE Processing Pipeline 04275d19a6c70caac1ace9ee8a75288a https://www.encodeproject.org/files/ENCFF152QPA/@@download/ENCFF152QPA.bed.gz GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF882UVM bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF562TUU 12295107 ENCODE Processing Pipeline 14690149f75c60867e01be8a1645a82a https://www.encodeproject.org/files/ENCFF882UVM/@@download/ENCFF882UVM.bigBed GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF080DKS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF730DLS 997471 ENCODE Processing Pipeline 5bd57bc3b20f8f3c627b718f98f2a086 https://www.encodeproject.org/files/ENCFF080DKS/@@download/ENCFF080DKS.bigBed GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF425QRS bigWig fold change over control ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF914ABF, ENCFF942FFX 106405013 ENCODE Processing Pipeline 2ed878a0574a432f9ab2ce48a32da741 https://www.encodeproject.org/files/ENCFF425QRS/@@download/ENCFF425QRS.bigWig GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF017VKI bigWig signal p-value ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548NQU, ENCFF914ABF, ENCFF942FFX 245117195 ENCODE Processing Pipeline b481be4bf2341e85d65de1b379ee7fe0 https://www.encodeproject.org/files/ENCFF017VKI/@@download/ENCFF017VKI.bigWig GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF562TUU bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF548NQU, ENCFF914ABF, ENCFF942FFX 5887178 ENCODE Processing Pipeline a42bf7d1dac8e7925d053e72ba627dd3 https://www.encodeproject.org/files/ENCFF562TUU/@@download/ENCFF562TUU.bed.gz GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF856JTT bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF549VGN 12218039 ENCODE Processing Pipeline 86278aea14b2e2d1891eae5b4676ebd9 https://www.encodeproject.org/files/ENCFF856JTT/@@download/ENCFF856JTT.bigBed GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF365NCW bed narrowPeak conservative idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF152QPA, ENCFF419RSJ, ENCFF549VGN, ENCFF562TUU 350824 ENCODE Processing Pipeline da078730dc74993b85a4697d3365beaa https://www.encodeproject.org/files/ENCFF365NCW/@@download/ENCFF365NCW.bed.gz GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF988PXD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365NCW 909233 ENCODE Processing Pipeline f391e24ab63fd12f5f188437fcf07817 https://www.encodeproject.org/files/ENCFF988PXD/@@download/ENCFF988PXD.bigBed GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF549VGN bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF548NQU, ENCFF942FFX 5437878 ENCODE Processing Pipeline 3871b175f6f083ff4973d0cd0d3f5795 https://www.encodeproject.org/files/ENCFF549VGN/@@download/ENCFF549VGN.bed.gz GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF891CRH bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF152QPA 8904427 ENCODE Processing Pipeline db06756cfbfe47f2a22a42918e756c5d https://www.encodeproject.org/files/ENCFF891CRH/@@download/ENCFF891CRH.bigBed GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF826FLP bigWig fold change over control ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF743JWE 106620707 ENCODE Processing Pipeline 060bf7760f185ea17b9c98da92b2d2c9 https://www.encodeproject.org/files/ENCFF826FLP/@@download/ENCFF826FLP.bigWig hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF659SMB bigWig signal p-value ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF583QFG, ENCFF743JWE 245421077 ENCODE Processing Pipeline 1630e25620c832cb2b6432dddf43da3a https://www.encodeproject.org/files/ENCFF659SMB/@@download/ENCFF659SMB.bigWig hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF839EBS bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF188QEA 12291802 ENCODE Processing Pipeline 5426607fc3faf9317ffdb2dc0fa67576 https://www.encodeproject.org/files/ENCFF839EBS/@@download/ENCFF839EBS.bigBed hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF303QSJ bigWig fold change over control ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF583QFG, ENCFF743JWE 254059843 ENCODE Processing Pipeline e4f606ba170eebc511a8f927cd96ab49 https://www.encodeproject.org/files/ENCFF303QSJ/@@download/ENCFF303QSJ.bigWig hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF050JYN bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF743JWE 3663233 ENCODE Processing Pipeline 1017df22cef1ab3d6851b3a7962ed2fd https://www.encodeproject.org/files/ENCFF050JYN/@@download/ENCFF050JYN.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF278XFP bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF583QFG 5443236 ENCODE Processing Pipeline 5cc4ac63006cbb2586c6108c05a5b363 https://www.encodeproject.org/files/ENCFF278XFP/@@download/ENCFF278XFP.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF481WUJ bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278XFP 12217873 ENCODE Processing Pipeline 830599ba6107b9c1a444d377fd65f7df https://www.encodeproject.org/files/ENCFF481WUJ/@@download/ENCFF481WUJ.bigBed hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF275TFD bed narrowPeak conservative idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF050JYN, ENCFF188QEA, ENCFF278XFP 351743 ENCODE Processing Pipeline 8325055489c2c9a56dde3da122effc74 https://www.encodeproject.org/files/ENCFF275TFD/@@download/ENCFF275TFD.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF082DRX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF275TFD 909259 ENCODE Processing Pipeline 6bbdd42c2c3c070c8d1f03cb17ba28f5 https://www.encodeproject.org/files/ENCFF082DRX/@@download/ENCFF082DRX.bigBed hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF551QPJ bam unfiltered alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPQ, ENCFF807MUK 587127779 ENCODE Processing Pipeline ae7c4f1a0d735c6b8aea8656848d6c4e https://www.encodeproject.org/files/ENCFF551QPJ/@@download/ENCFF551QPJ.bam hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF785APX bam unfiltered alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPO, ENCFF807MUK 868036589 ENCODE Processing Pipeline 4ab91c11164582b3b5af57a9caffa5af https://www.encodeproject.org/files/ENCFF785APX/@@download/ENCFF785APX.bam hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF466OTZ bigWig fold change over control ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF583QFG 173852945 ENCODE Processing Pipeline 5ae8c534798b33b1a8c26b0432f9fa7d https://www.encodeproject.org/files/ENCFF466OTZ/@@download/ENCFF466OTZ.bigWig hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF270QAB bed narrowPeak optimal idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF050JYN, ENCFF188QEA, ENCFF278XFP 400425 ENCODE Processing Pipeline 932fe48d98f71d06e962f09468c47775 https://www.encodeproject.org/files/ENCFF270QAB/@@download/ENCFF270QAB.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF887XIX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF270QAB 995178 ENCODE Processing Pipeline d592e659745aeb44db8ac50112c6d06a https://www.encodeproject.org/files/ENCFF887XIX/@@download/ENCFF887XIX.bigBed hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF743JWE bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPQ, ENCFF807MUK 271314781 ENCODE Processing Pipeline 9dc27cb21a1a01b7c97cd83e3f789eb3 https://www.encodeproject.org/files/ENCFF743JWE/@@download/ENCFF743JWE.bam hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF583QFG bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPO, ENCFF807MUK 480136451 ENCODE Processing Pipeline a7b75d298c99beea23ef656f02268cdb https://www.encodeproject.org/files/ENCFF583QFG/@@download/ENCFF583QFG.bam hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF865SNR bigWig signal p-value ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF583QFG 236948865 ENCODE Processing Pipeline 95feae035a7306ac47e1719a3a83b936 https://www.encodeproject.org/files/ENCFF865SNR/@@download/ENCFF865SNR.bigWig hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF011CZU bigWig signal p-value ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF743JWE 226723730 ENCODE Processing Pipeline d93fdecf965d107f0fc5bfeb0227509a https://www.encodeproject.org/files/ENCFF011CZU/@@download/ENCFF011CZU.bigWig hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF020BWM bigBed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF050JYN 8880585 ENCODE Processing Pipeline b3aee6d300f7bc5a8f6725e4c9e04cc6 https://www.encodeproject.org/files/ENCFF020BWM/@@download/ENCFF020BWM.bigBed hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF188QEA bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF583QFG, ENCFF743JWE 5889292 ENCODE Processing Pipeline 594dec0c561ac61635170ca86192f653 https://www.encodeproject.org/files/ENCFF188QEA/@@download/ENCFF188QEA.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000SBE bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SBO 1066957160 Vishwanath Iyer, UTA 8e2263d50f5d33f4f8f8ead8ec42951f https://www.encodeproject.org/files/ENCFF000SBE/@@download/ENCFF000SBE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000SBF bigWig base overlap signal ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1182540807 Vishwanath Iyer, UTA 817b7951625d19c16bb4ba34b1991cf7 https://www.encodeproject.org/files/ENCFF000SBF/@@download/ENCFF000SBF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000SBG bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTU 2784421 Vishwanath Iyer, UTA cd51a25e8fd37206ce3b60a06b342eca https://www.encodeproject.org/files/ENCFF000SBG/@@download/ENCFF000SBG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000SBH bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SBP 1144466114 Vishwanath Iyer, UTA b43ed7caee993d1887966e1840793bbe https://www.encodeproject.org/files/ENCFF000SBH/@@download/ENCFF000SBH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000SBJ bigWig signal ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2536501026 Vishwanath Iyer, UTA 5b48ce173ca0d658d4eb1bdd5d04e4e5 https://www.encodeproject.org/files/ENCFF000SBJ/@@download/ENCFF000SBJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000SBO fastq reads ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1172733474 Vishwanath Iyer, UTA fc3ca9538f45aff52889dc81b8555ffc https://www.encodeproject.org/files/ENCFF000SBO/@@download/ENCFF000SBO.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000SBP fastq reads ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1221635521 Vishwanath Iyer, UTA 05972ee0669713bb8b447080c827094e https://www.encodeproject.org/files/ENCFF000SBP/@@download/ENCFF000SBP.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF001UTU bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 1610589 Vishwanath Iyer, UTA 5125c16af17d12c111cc557b5d208526 https://www.encodeproject.org/files/ENCFF001UTU/@@download/ENCFF001UTU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002DBO bed narrowPeak optimal idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 474239 ENCODE Consortium Analysis Working Group ee8f76c66177dfb9f1ea71e4c653892e https://www.encodeproject.org/files/ENCFF002DBO/@@download/ENCFF002DBO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF008UNU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBO 1354404 ENCODE Consortium 394311f91b5d8f1e79c90e7263db3b8a https://www.encodeproject.org/files/ENCFF008UNU/@@download/ENCFF008UNU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF272NAY bam unfiltered alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBP, ENCFF643CGH 1581425059 ENCODE Processing Pipeline a702e33493088fa14b77dc7818e701d6 https://www.encodeproject.org/files/ENCFF272NAY/@@download/ENCFF272NAY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF974ACJ bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBO, ENCFF643CGH 683935144 ENCODE Processing Pipeline 2ab9acc5d60a60780e0164b25e19211a https://www.encodeproject.org/files/ENCFF974ACJ/@@download/ENCFF974ACJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF861AUH bam unfiltered alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBO, ENCFF643CGH 1466005106 ENCODE Processing Pipeline 422ce369f5a4206144d13a8963f386a2 https://www.encodeproject.org/files/ENCFF861AUH/@@download/ENCFF861AUH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF779NYT bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBP, ENCFF643CGH 807574166 ENCODE Processing Pipeline 1d26717b06d05c3e8d2765183ed93e73 https://www.encodeproject.org/files/ENCFF779NYT/@@download/ENCFF779NYT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF984XAM bam unfiltered alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBO, ENCFF807MUK 1464963212 ENCODE Processing Pipeline 665fa334a2fd4c29a49216ccf6d245ba https://www.encodeproject.org/files/ENCFF984XAM/@@download/ENCFF984XAM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF144ODF bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBO, ENCFF807MUK 684044032 ENCODE Processing Pipeline 570a7e40989ae4ea242aa7d1686f5460 https://www.encodeproject.org/files/ENCFF144ODF/@@download/ENCFF144ODF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF230ELL bam unfiltered alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBP, ENCFF807MUK 1580064955 ENCODE Processing Pipeline dbabff6b46bd884a712fc4b41f160551 https://www.encodeproject.org/files/ENCFF230ELL/@@download/ENCFF230ELL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF548KMY bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBP, ENCFF807MUK 807779634 ENCODE Processing Pipeline 755d50eaa54e928b27c84d52c99209d7 https://www.encodeproject.org/files/ENCFF548KMY/@@download/ENCFF548KMY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF242RQN bigWig signal p-value ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF779NYT 469975386 ENCODE Processing Pipeline c5c2d366d78b65fa6f27d977606fe3fe https://www.encodeproject.org/files/ENCFF242RQN/@@download/ENCFF242RQN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF663QKE bigWig fold change over control ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF779NYT, ENCFF974ACJ 496547290 ENCODE Processing Pipeline db28feee601f15a399077346a65d3039 https://www.encodeproject.org/files/ENCFF663QKE/@@download/ENCFF663QKE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF889IGT bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF974ACJ 6490877 ENCODE Processing Pipeline ecf4b83daab1384c3abe6f3435aef3bf https://www.encodeproject.org/files/ENCFF889IGT/@@download/ENCFF889IGT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF408KCF bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF889IGT 12786398 ENCODE Processing Pipeline 86ded6fbb0d5059343ff28d9f8611773 https://www.encodeproject.org/files/ENCFF408KCF/@@download/ENCFF408KCF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF672TCD bigWig signal p-value ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF779NYT, ENCFF974ACJ 494201473 ENCODE Processing Pipeline 1b8d2aaecb4fb4ddcccda9d8224c6760 https://www.encodeproject.org/files/ENCFF672TCD/@@download/ENCFF672TCD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF702CFO bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF779NYT, ENCFF974ACJ 6990710 ENCODE Processing Pipeline 9c439304745ac86799c4af2fac1758c8 https://www.encodeproject.org/files/ENCFF702CFO/@@download/ENCFF702CFO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF240SEN bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF241DKZ 12814105 ENCODE Processing Pipeline d9fbaa07b207978796a13983af333469 https://www.encodeproject.org/files/ENCFF240SEN/@@download/ENCFF240SEN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF542JWQ bed narrowPeak conservative idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF241DKZ, ENCFF419RSJ, ENCFF702CFO, ENCFF889IGT 462811 ENCODE Processing Pipeline 8bf0be595ee876ec956015bb43537ec1 https://www.encodeproject.org/files/ENCFF542JWQ/@@download/ENCFF542JWQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF773AUB bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF702CFO 12746887 ENCODE Processing Pipeline cf73f806f7621e41696f3b62c9c8943d https://www.encodeproject.org/files/ENCFF773AUB/@@download/ENCFF773AUB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF842QUZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF542JWQ 1155002 ENCODE Processing Pipeline 7a7c6c0297ef31af43da0572119e4656 https://www.encodeproject.org/files/ENCFF842QUZ/@@download/ENCFF842QUZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF772QQT bigWig signal p-value ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF974ACJ 442625593 ENCODE Processing Pipeline b5a61492f6bb394297fb3b94a1b80460 https://www.encodeproject.org/files/ENCFF772QQT/@@download/ENCFF772QQT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF787KFV bigWig fold change over control ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF974ACJ 273071785 ENCODE Processing Pipeline 2c0a16e9fad2825c15adf3d88d4a6a11 https://www.encodeproject.org/files/ENCFF787KFV/@@download/ENCFF787KFV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF155GTZ bigWig fold change over control ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF779NYT 333614134 ENCODE Processing Pipeline 3c2e8974123e500c51ec1f95552c3e9e https://www.encodeproject.org/files/ENCFF155GTZ/@@download/ENCFF155GTZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF241DKZ bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF779NYT 6551330 ENCODE Processing Pipeline a6db82772686b6f1b803060760922ef5 https://www.encodeproject.org/files/ENCFF241DKZ/@@download/ENCFF241DKZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF964EVA bed narrowPeak optimal idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF241DKZ, ENCFF419RSJ, ENCFF702CFO, ENCFF889IGT 479292 ENCODE Processing Pipeline 6bffca0c28d6a801307df92dabe6abc5 https://www.encodeproject.org/files/ENCFF964EVA/@@download/ENCFF964EVA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF592GDV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF964EVA 1182894 ENCODE Processing Pipeline 586a3a94cc69ec26cbb7e185d0c305ae https://www.encodeproject.org/files/ENCFF592GDV/@@download/ENCFF592GDV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF676ZLI bigWig fold change over control ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF144ODF, ENCFF602XLT 271509652 ENCODE Processing Pipeline 5f1978f70a29fa6c2a2caf45ca95c163 https://www.encodeproject.org/files/ENCFF676ZLI/@@download/ENCFF676ZLI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF365LXB bigWig signal p-value ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144ODF, ENCFF548KMY, ENCFF602XLT 494734139 ENCODE Processing Pipeline 966c51eb2cb0ae0476541e68a95e7e2e https://www.encodeproject.org/files/ENCFF365LXB/@@download/ENCFF365LXB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF763KGX bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF548KMY, ENCFF602XLT 6552837 ENCODE Processing Pipeline 484acec17cb7b2e4decd4a12450e4a58 https://www.encodeproject.org/files/ENCFF763KGX/@@download/ENCFF763KGX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF236LMH bed narrowPeak conservative idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF192XNZ, ENCFF763KGX, ENCFF824QGC 462590 ENCODE Processing Pipeline 90dc44a6ae8b3233e798512e24cba473 https://www.encodeproject.org/files/ENCFF236LMH/@@download/ENCFF236LMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF830MXC bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF192XNZ 12782099 ENCODE Processing Pipeline 9381d53213a660907011b7c11f0b6a31 https://www.encodeproject.org/files/ENCFF830MXC/@@download/ENCFF830MXC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF115VLY bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF763KGX 12809774 ENCODE Processing Pipeline d7a87227edf8ccd9e8eae8ad58eb17fa https://www.encodeproject.org/files/ENCFF115VLY/@@download/ENCFF115VLY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF839HDP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF236LMH 1154009 ENCODE Processing Pipeline fb6b37f0e55601f314a206b8195d5903 https://www.encodeproject.org/files/ENCFF839HDP/@@download/ENCFF839HDP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF192XNZ bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF144ODF, ENCFF602XLT 6492150 ENCODE Processing Pipeline f4d1fe9e47af65775498fc79762d2c92 https://www.encodeproject.org/files/ENCFF192XNZ/@@download/ENCFF192XNZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF071MJK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF883LPV 1173426 ENCODE Processing Pipeline 78cf97c2955e35a17e496ec3e14a0acf https://www.encodeproject.org/files/ENCFF071MJK/@@download/ENCFF071MJK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF436BHY bigWig signal p-value ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF144ODF, ENCFF602XLT 492770659 ENCODE Processing Pipeline 3e75097f61f9eaeff54cc13346959f08 https://www.encodeproject.org/files/ENCFF436BHY/@@download/ENCFF436BHY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF035ERE bigWig signal p-value ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF548KMY, ENCFF602XLT 491447981 ENCODE Processing Pipeline 373131e89b23b28bc55adbdb09612cc4 https://www.encodeproject.org/files/ENCFF035ERE/@@download/ENCFF035ERE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF408SMJ bigWig fold change over control ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144ODF, ENCFF548KMY, ENCFF602XLT 497599543 ENCODE Processing Pipeline 46e27618d3e96a3a66c87fcfa53f143e https://www.encodeproject.org/files/ENCFF408SMJ/@@download/ENCFF408SMJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF824QGC bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144ODF, ENCFF548KMY, ENCFF602XLT 6990261 ENCODE Processing Pipeline ea0040026acbac18e0875e24c4e4be1a https://www.encodeproject.org/files/ENCFF824QGC/@@download/ENCFF824QGC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF975BWF bigWig fold change over control ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF548KMY, ENCFF602XLT 333732910 ENCODE Processing Pipeline 4a4d1d53a5c7cc24514150bc5f798107 https://www.encodeproject.org/files/ENCFF975BWF/@@download/ENCFF975BWF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF755FVP bigBed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF824QGC 12742878 ENCODE Processing Pipeline 568c7a79a0ffbb2bf3c14404891ed2d4 https://www.encodeproject.org/files/ENCFF755FVP/@@download/ENCFF755FVP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF883LPV bed narrowPeak optimal idr thresholded peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF192XNZ, ENCFF763KGX, ENCFF824QGC 473763 ENCODE Processing Pipeline 537bae2fea75ddd83304278c2f3c11e1 https://www.encodeproject.org/files/ENCFF883LPV/@@download/ENCFF883LPV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000YSI bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YSZ 370319550 Peggy Farnham, USC 1e16fa53324b9097c4c9ed5d3f7bdb40 https://www.encodeproject.org/files/ENCFF000YSI/@@download/ENCFF000YSI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF000YSJ bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YTA 702043844 Peggy Farnham, USC 641652e7188f7ba8d4fa0095e9cbd8b6 https://www.encodeproject.org/files/ENCFF000YSJ/@@download/ENCFF000YSJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF000YSK bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001VNO 1077555 Peggy Farnham, USC a57fd16ecef0ac30d02f76e8612ad498 https://www.encodeproject.org/files/ENCFF000YSK/@@download/ENCFF000YSK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF000YSM bigWig signal ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSI, ENCFF000YSJ 352284026 Peggy Farnham, USC ff1c0b0983e5a2655e6abfdc62779656 https://www.encodeproject.org/files/ENCFF000YSM/@@download/ENCFF000YSM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF000YSZ fastq reads ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 963207391 Peggy Farnham, USC 0d93a5f061166053075d7addc4142300 https://www.encodeproject.org/files/ENCFF000YSZ/@@download/ENCFF000YSZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF000YTA fastq reads ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 521698463 Peggy Farnham, USC bdb0b16d2c161b00ed1ca1ff95b89897 https://www.encodeproject.org/files/ENCFF000YTA/@@download/ENCFF000YTA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF001VNO bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSI, ENCFF000YSJ 465250 Peggy Farnham, USC aa5a2a7e6d220638803775fcbf768e3e https://www.encodeproject.org/files/ENCFF001VNO/@@download/ENCFF001VNO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF890VHE bam unfiltered alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YTA, ENCFF643CGH 574624683 ENCODE Processing Pipeline ad3e0f5d7ea3c5b515f1552a85a1bfa8 https://www.encodeproject.org/files/ENCFF890VHE/@@download/ENCFF890VHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF248MZT bam unfiltered alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YSZ, ENCFF807MUK 1271043887 ENCODE Processing Pipeline 0d7dd8bdb567e62ec9c0569768379280 https://www.encodeproject.org/files/ENCFF248MZT/@@download/ENCFF248MZT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF267KML bam unfiltered alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YTA, ENCFF807MUK 637101522 ENCODE Processing Pipeline 6e45c096d788d4195a0595ba75693061 https://www.encodeproject.org/files/ENCFF267KML/@@download/ENCFF267KML.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF409OXB bam unfiltered alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YSZ, ENCFF643CGH 1207165341 ENCODE Processing Pipeline d5c445d17f24ac6d04fe546f77f0e18c https://www.encodeproject.org/files/ENCFF409OXB/@@download/ENCFF409OXB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF002CXA bed narrowPeak optimal idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSI, ENCFF000YSJ 130936 ENCODE Consortium Analysis Working Group 44c383b2a77c0adb37a0898c290fb584 https://www.encodeproject.org/files/ENCFF002CXA/@@download/ENCFF002CXA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF713FIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF002CXA 405157 ENCODE Consortium c7b02ee483fb9f342351b2119a28aba5 https://www.encodeproject.org/files/ENCFF713FIQ/@@download/ENCFF713FIQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF282OJT bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YSZ, ENCFF807MUK 399585274 ENCODE Processing Pipeline 56a11e45edd36f6a59c68bb56307a5c8 https://www.encodeproject.org/files/ENCFF282OJT/@@download/ENCFF282OJT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF997OPU bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YTA, ENCFF807MUK 367996924 ENCODE Processing Pipeline 27a6a81acebd4291fbde90ea071ce740 https://www.encodeproject.org/files/ENCFF997OPU/@@download/ENCFF997OPU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF432ART bigWig fold change over control ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF282OJT 356134312 ENCODE Processing Pipeline 4d9704f991294a9d1ba7b463c9b1eca3 https://www.encodeproject.org/files/ENCFF432ART/@@download/ENCFF432ART.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF273OJT bigWig signal p-value ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF282OJT 402305217 ENCODE Processing Pipeline d525b2edce2c34b3ae4a0619ec1cb677 https://www.encodeproject.org/files/ENCFF273OJT/@@download/ENCFF273OJT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF313XDL bigWig fold change over control ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF997OPU 248878556 ENCODE Processing Pipeline 8b876fb96a392e72f065a7f17904eba7 https://www.encodeproject.org/files/ENCFF313XDL/@@download/ENCFF313XDL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF863UQC bigWig signal p-value ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF997OPU 365149930 ENCODE Processing Pipeline 05d5798494eb2f6c42fafaca94e102ec https://www.encodeproject.org/files/ENCFF863UQC/@@download/ENCFF863UQC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF811QWR bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF282OJT 6238078 ENCODE Processing Pipeline c863eb60784426b6be172bd9933ced69 https://www.encodeproject.org/files/ENCFF811QWR/@@download/ENCFF811QWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF467GQJ bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF401VYC 13076841 ENCODE Processing Pipeline 6e10ffb156a8fc69a97c9cd09eab4df0 https://www.encodeproject.org/files/ENCFF467GQJ/@@download/ENCFF467GQJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF220VNS bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF007QAA 12932592 ENCODE Processing Pipeline 7216071b800de95ff184c8f3e614f7d9 https://www.encodeproject.org/files/ENCFF220VNS/@@download/ENCFF220VNS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF792RWP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF591BIT 285003 ENCODE Processing Pipeline f48edd14c49982b41b73f266e50aad18 https://www.encodeproject.org/files/ENCFF792RWP/@@download/ENCFF792RWP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF974EHC bigWig signal p-value ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF282OJT, ENCFF997OPU 547191687 ENCODE Processing Pipeline 5a3a3185b7745b3837fa7b29a80a8ef8 https://www.encodeproject.org/files/ENCFF974EHC/@@download/ENCFF974EHC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF910BQM bigWig fold change over control ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF282OJT, ENCFF997OPU 536758996 ENCODE Processing Pipeline 2ea2bce55270fa55b2c3bccdcd21df20 https://www.encodeproject.org/files/ENCFF910BQM/@@download/ENCFF910BQM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF007QAA bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF282OJT, ENCFF997OPU 6759221 ENCODE Processing Pipeline d57794fde8102c7b0cb404948ea6c3d2 https://www.encodeproject.org/files/ENCFF007QAA/@@download/ENCFF007QAA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF624JZG bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF811QWR 12893781 ENCODE Processing Pipeline 03d3eb3bbd1df0292de2a26a95d31fd5 https://www.encodeproject.org/files/ENCFF624JZG/@@download/ENCFF624JZG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF095UIS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF016PZU 274170 ENCODE Processing Pipeline 911084aea8b2a0a4589587fd3b0ff6e1 https://www.encodeproject.org/files/ENCFF095UIS/@@download/ENCFF095UIS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF591BIT bed narrowPeak optimal idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF007QAA, ENCFF401VYC, ENCFF811QWR 109809 ENCODE Processing Pipeline 3cbd8317834ea4a0b339e357c3badbe1 https://www.encodeproject.org/files/ENCFF591BIT/@@download/ENCFF591BIT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF401VYC bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF997OPU 5607888 ENCODE Processing Pipeline eaa1674d9f3913d9ac45c3bc0d9f5f41 https://www.encodeproject.org/files/ENCFF401VYC/@@download/ENCFF401VYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF016PZU bed narrowPeak conservative idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF007QAA, ENCFF401VYC, ENCFF811QWR 104182 ENCODE Processing Pipeline 12705056c7010bf8e6f71e45226d32a7 https://www.encodeproject.org/files/ENCFF016PZU/@@download/ENCFF016PZU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF798UCN bam unfiltered alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YTA, ENCFF643CGH 640327375 ENCODE Processing Pipeline 2009acb33c36f071d897f54de1e74165 https://www.encodeproject.org/files/ENCFF798UCN/@@download/ENCFF798UCN.bam GRCh38 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF166JNV bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YTA, ENCFF643CGH 367775356 ENCODE Processing Pipeline 2856144264964220cbb51ad43cce72d8 https://www.encodeproject.org/files/ENCFF166JNV/@@download/ENCFF166JNV.bam GRCh38 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF904REX bam unfiltered alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YSZ, ENCFF643CGH 1278741057 ENCODE Processing Pipeline 5a28e3fea2dac505d2f2221f6f0185f7 https://www.encodeproject.org/files/ENCFF904REX/@@download/ENCFF904REX.bam GRCh38 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF921KTI bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YSZ, ENCFF643CGH 399368588 ENCODE Processing Pipeline 2a43e8fa232cc6793c8f1c323e486c1e https://www.encodeproject.org/files/ENCFF921KTI/@@download/ENCFF921KTI.bam GRCh38 archived low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF170NGB bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YSZ, ENCFF643CGH 363853584 ENCODE Processing Pipeline d9b58d6ef740f4969066f700e15c0e79 https://www.encodeproject.org/files/ENCFF170NGB/@@download/ENCFF170NGB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF426DLJ bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YTA, ENCFF643CGH 299202314 ENCODE Processing Pipeline 35e3e23b5d1fb9f9ceb38d31c018d373 https://www.encodeproject.org/files/ENCFF426DLJ/@@download/ENCFF426DLJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF832LHP bigWig signal p-value ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF170NGB, ENCFF355SGP 376648676 ENCODE Processing Pipeline 7b508761257ee3ac50bbbe5e030fea4c https://www.encodeproject.org/files/ENCFF832LHP/@@download/ENCFF832LHP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF524EWQ bigWig signal p-value ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF426DLJ 344559478 ENCODE Processing Pipeline c339df8b937a06f7b4ba51bb98d17f9c https://www.encodeproject.org/files/ENCFF524EWQ/@@download/ENCFF524EWQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF430OPH bigWig fold change over control ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF170NGB, ENCFF355SGP 351321057 ENCODE Processing Pipeline 77380cc654e023f8eab5ea8bf118433c https://www.encodeproject.org/files/ENCFF430OPH/@@download/ENCFF430OPH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF048KMO bigWig signal p-value ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF170NGB, ENCFF355SGP, ENCFF426DLJ 458663974 ENCODE Processing Pipeline e78421fcf8f955f4ab114bce67bbb70c https://www.encodeproject.org/files/ENCFF048KMO/@@download/ENCFF048KMO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF513PHS bigWig fold change over control ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF426DLJ 234881050 ENCODE Processing Pipeline 2de54fd8130c54cf4e051e50aacf50ac https://www.encodeproject.org/files/ENCFF513PHS/@@download/ENCFF513PHS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF009LSV bigWig fold change over control ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF170NGB, ENCFF355SGP, ENCFF426DLJ 519738763 ENCODE Processing Pipeline 398fba1881cd2f09d73b280023db2289 https://www.encodeproject.org/files/ENCFF009LSV/@@download/ENCFF009LSV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF290CRI bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF745YFR 12885211 ENCODE Processing Pipeline e9dc2cb14af2e75dc2ab7bdd3cc12cea https://www.encodeproject.org/files/ENCFF290CRI/@@download/ENCFF290CRI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF745YFR bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF170NGB, ENCFF355SGP 5897867 ENCODE Processing Pipeline a633db35d0114fb5040184b527fa54d1 https://www.encodeproject.org/files/ENCFF745YFR/@@download/ENCFF745YFR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF351LUY bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF355SGP, ENCFF426DLJ 5199287 ENCODE Processing Pipeline 49e747dd868cfad84bd26221e9370ecf https://www.encodeproject.org/files/ENCFF351LUY/@@download/ENCFF351LUY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF905ZZX bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF170NGB, ENCFF355SGP, ENCFF426DLJ 6589321 ENCODE Processing Pipeline 6d1ff5378217060b24d44cafaaa05ca7 https://www.encodeproject.org/files/ENCFF905ZZX/@@download/ENCFF905ZZX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF642FAK bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF351LUY 12977297 ENCODE Processing Pipeline 955d1b317ec60d0c540722b016469399 https://www.encodeproject.org/files/ENCFF642FAK/@@download/ENCFF642FAK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF072MZT bigBed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF905ZZX 12935760 ENCODE Processing Pipeline dd05292e5f79c50001e5e08f9856cdce https://www.encodeproject.org/files/ENCFF072MZT/@@download/ENCFF072MZT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF821JKR bed narrowPeak conservative idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF351LUY, ENCFF419RSJ, ENCFF745YFR, ENCFF905ZZX 85206 ENCODE Processing Pipeline ed82cc20a0e0dcd78816ea3b83d7fcf8 https://www.encodeproject.org/files/ENCFF821JKR/@@download/ENCFF821JKR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF110MOR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF821JKR 240932 ENCODE Processing Pipeline ea69e0309392c1e5a42086642aef79d4 https://www.encodeproject.org/files/ENCFF110MOR/@@download/ENCFF110MOR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF623ELO bed narrowPeak optimal idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF351LUY, ENCFF419RSJ, ENCFF745YFR, ENCFF905ZZX 89903 ENCODE Processing Pipeline 99942fd6c50b421da7144d15f9b304d1 https://www.encodeproject.org/files/ENCFF623ELO/@@download/ENCFF623ELO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF334YXF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF623ELO 250535 ENCODE Processing Pipeline dd5106fec7759b4856d0c88a788d103e https://www.encodeproject.org/files/ENCFF334YXF/@@download/ENCFF334YXF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF000CFM bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000CFV 428837547 Bradley Bernstein, Broad 9af696e33786c7329f4e9d60c58d91bf https://www.encodeproject.org/files/ENCFF000CFM/@@download/ENCFF000CFM.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF000CFN bigBed broadPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001TAT 1830298 Bradley Bernstein, Broad 2dc4cc6a66d88cf8c11fc4edf62d0511 https://www.encodeproject.org/files/ENCFF000CFN/@@download/ENCFF000CFN.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF000CFP bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000CFW 650560756 Bradley Bernstein, Broad b988108ba72840108da6f78d6aed6aa5 https://www.encodeproject.org/files/ENCFF000CFP/@@download/ENCFF000CFP.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF000CFQ bigWig signal ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 410621863 Bradley Bernstein, Broad 94b5e49e89495d0cea59833bd3e0c6dc https://www.encodeproject.org/files/ENCFF000CFQ/@@download/ENCFF000CFQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, NTR biosample insufficient read depth ENCFF000CFV fastq reads ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 491677928 Bradley Bernstein, Broad b1ca3218f389c88025391938ed1eb67b https://www.encodeproject.org/files/ENCFF000CFV/@@download/ENCFF000CFV.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000CFR/ released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF000CFW fastq reads ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 775453477 Bradley Bernstein, Broad 057298de040714f378020fbeb8c7be94 https://www.encodeproject.org/files/ENCFF000CFW/@@download/ENCFF000CFW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000CFY/ released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF001TAT bed broadPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1037621 Bradley Bernstein, Broad 3a8c566046af8b59b1b12900e12b918a https://www.encodeproject.org/files/ENCFF001TAT/@@download/ENCFF001TAT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, NTR biosample insufficient read depth ENCFF002CEW bed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 770760 ENCODE Consortium Analysis Working Group 434e33ec51c578c335d90954e33fb871 https://www.encodeproject.org/files/ENCFF002CEW/@@download/ENCFF002CEW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, NTR biosample insufficient read depth ENCFF137WVL bigBed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CEW 1699113 ENCODE Consortium 3edd9829bd8c364e8e4f1a138b8efc22 https://www.encodeproject.org/files/ENCFF137WVL/@@download/ENCFF137WVL.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF288HLV bam unfiltered alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CFV, ENCFF643CGH 612643148 ENCODE Processing Pipeline 6bec5785fef36b298924f1e6d78b9ff3 https://www.encodeproject.org/files/ENCFF288HLV/@@download/ENCFF288HLV.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF414QUV bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CFV, ENCFF643CGH 265686298 ENCODE Processing Pipeline d6baea68aa7bb0dca5b6abb7fd14e1ca https://www.encodeproject.org/files/ENCFF414QUV/@@download/ENCFF414QUV.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF086PVK bam unfiltered alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CFW, ENCFF643CGH 988378425 ENCODE Processing Pipeline d2a73b1f85f91157edb58b6b2255f802 https://www.encodeproject.org/files/ENCFF086PVK/@@download/ENCFF086PVK.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF616NWB bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CFW, ENCFF643CGH 452314464 ENCODE Processing Pipeline 57030356d1c1757703878eec6b873b52 https://www.encodeproject.org/files/ENCFF616NWB/@@download/ENCFF616NWB.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF418VFM bam unfiltered alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CFW, ENCFF807MUK 983750784 ENCODE Processing Pipeline 4eeab3577f6e46025d1e5fbc55a8d9e1 https://www.encodeproject.org/files/ENCFF418VFM/@@download/ENCFF418VFM.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF714RHW bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CFW, ENCFF807MUK 452475294 ENCODE Processing Pipeline 9d1a48142f90145d9a8df614892653b1 https://www.encodeproject.org/files/ENCFF714RHW/@@download/ENCFF714RHW.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF041UKI bam unfiltered alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CFV, ENCFF807MUK 610622789 ENCODE Processing Pipeline 6606476d67560c60ffed85e620599e60 https://www.encodeproject.org/files/ENCFF041UKI/@@download/ENCFF041UKI.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF717LQB bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CFV, ENCFF807MUK 265803513 ENCODE Processing Pipeline 49e5b253f7d529f372d72d9ffeb71899 https://www.encodeproject.org/files/ENCFF717LQB/@@download/ENCFF717LQB.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF261BBJ bigWig signal p-value ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF191SLR, ENCFF350LQZ, ENCFF717LQB 1149147010 ENCODE Processing Pipeline e022003d1481f276e583aeaf4e740fe3 https://www.encodeproject.org/files/ENCFF261BBJ/@@download/ENCFF261BBJ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF380XDD bigWig fold change over control ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF191SLR, ENCFF350LQZ, ENCFF717LQB 440989891 ENCODE Processing Pipeline 162df26aba1e5bea5de2f3dc2b428818 https://www.encodeproject.org/files/ENCFF380XDD/@@download/ENCFF380XDD.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF308WJK bigWig signal p-value ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW 1128318469 ENCODE Processing Pipeline 900f3c78f3d3b8999a7a1593a4718f4b https://www.encodeproject.org/files/ENCFF308WJK/@@download/ENCFF308WJK.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF341CMJ bigWig signal p-value ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW, ENCFF717LQB 1239211066 ENCODE Processing Pipeline 8beaff1152010943bed28a3bd8a2a207 https://www.encodeproject.org/files/ENCFF341CMJ/@@download/ENCFF341CMJ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF101AGS bigWig fold change over control ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW 548924569 ENCODE Processing Pipeline 87a5f88970283ab7edde90b80a8c73e6 https://www.encodeproject.org/files/ENCFF101AGS/@@download/ENCFF101AGS.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF330KYK bigWig fold change over control ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW, ENCFF717LQB 838491149 ENCODE Processing Pipeline a01f20570de0ef7ccb14f6ff1443fa68 https://www.encodeproject.org/files/ENCFF330KYK/@@download/ENCFF330KYK.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF113DAW bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF191SLR, ENCFF350LQZ, ENCFF717LQB 2926748 ENCODE Processing Pipeline e4f9f3a12e9ca2ddc1ff6d8b828d1ff7 https://www.encodeproject.org/files/ENCFF113DAW/@@download/ENCFF113DAW.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF527FXX bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW 4532432 ENCODE Processing Pipeline 9d65dee2b43c968f92488a2be9b805a7 https://www.encodeproject.org/files/ENCFF527FXX/@@download/ENCFF527FXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF857XBX bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW, ENCFF717LQB 5549540 ENCODE Processing Pipeline 7e77e9a6500e464ba63339a99038198b https://www.encodeproject.org/files/ENCFF857XBX/@@download/ENCFF857XBX.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF512OYF bigBed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF113DAW 6634932 ENCODE Processing Pipeline 9fa92f0bea711166f24478adaceb4663 https://www.encodeproject.org/files/ENCFF512OYF/@@download/ENCFF512OYF.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF333HGA bigBed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF527FXX 10113604 ENCODE Processing Pipeline 945734c2ea619e9bf8fe45527890c307 https://www.encodeproject.org/files/ENCFF333HGA/@@download/ENCFF333HGA.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF744ZEE bigBed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF857XBX 11664458 ENCODE Processing Pipeline 7fd02ec43e71842b0e517886d29f6b2a https://www.encodeproject.org/files/ENCFF744ZEE/@@download/ENCFF744ZEE.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF415WKV bed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF113DAW, ENCFF527FXX, ENCFF857XBX 576020 ENCODE Processing Pipeline 86f81256e7eb31e31845b1b9a9c45e35 https://www.encodeproject.org/files/ENCFF415WKV/@@download/ENCFF415WKV.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF325WXM bigBed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF415WKV 1082904 ENCODE Processing Pipeline 83b7b1ef688f672209ae83ba2938edf6 https://www.encodeproject.org/files/ENCFF325WXM/@@download/ENCFF325WXM.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF589TCE bigWig signal p-value ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF216TIF, ENCFF414QUV, ENCFF639TYV 1147866141 ENCODE Processing Pipeline b4122ba20c5b31d06759f3d7e0f5df65 https://www.encodeproject.org/files/ENCFF589TCE/@@download/ENCFF589TCE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF530GAR bigWig fold change over control ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF216TIF, ENCFF414QUV, ENCFF639TYV 440368589 ENCODE Processing Pipeline 0eaaae969d6d7a3e1bd33d7358b61eb1 https://www.encodeproject.org/files/ENCFF530GAR/@@download/ENCFF530GAR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF922LYN bigWig signal p-value ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF216TIF, ENCFF616NWB, ENCFF639TYV 1171465216 ENCODE Processing Pipeline 3df3bff5610101f80678c98ade6dbea5 https://www.encodeproject.org/files/ENCFF922LYN/@@download/ENCFF922LYN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF386XYL bigWig signal p-value ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF216TIF, ENCFF414QUV, ENCFF616NWB, ENCFF639TYV 1324862955 ENCODE Processing Pipeline e87864d9e39ba4947bc76fb46d9e7073 https://www.encodeproject.org/files/ENCFF386XYL/@@download/ENCFF386XYL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF181OXG bigWig fold change over control ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF216TIF, ENCFF616NWB, ENCFF639TYV 550237720 ENCODE Processing Pipeline 438b833f35ed99b15b0ca12f5731e83b https://www.encodeproject.org/files/ENCFF181OXG/@@download/ENCFF181OXG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF033TTE bigWig fold change over control ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF216TIF, ENCFF414QUV, ENCFF616NWB, ENCFF639TYV 852147854 ENCODE Processing Pipeline 019ab3ef69d05ff71ddd444b9ff2daca https://www.encodeproject.org/files/ENCFF033TTE/@@download/ENCFF033TTE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF678OVT bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF216TIF, ENCFF414QUV, ENCFF639TYV 2832609 ENCODE Processing Pipeline ffc7ba205ba199ce0ac24869e9c3c389 https://www.encodeproject.org/files/ENCFF678OVT/@@download/ENCFF678OVT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF567MRO bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF216TIF, ENCFF616NWB, ENCFF639TYV 4563303 ENCODE Processing Pipeline b214ded1f79a7372c1ce80c0032c295d https://www.encodeproject.org/files/ENCFF567MRO/@@download/ENCFF567MRO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF660ZJK bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF216TIF, ENCFF414QUV, ENCFF616NWB, ENCFF639TYV 5512088 ENCODE Processing Pipeline 74aa5320ed35586263c91d275fcd4f0f https://www.encodeproject.org/files/ENCFF660ZJK/@@download/ENCFF660ZJK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF855NDN bigBed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF678OVT 6459284 ENCODE Processing Pipeline 22a14c1f2f589bf83de15faf751662dd https://www.encodeproject.org/files/ENCFF855NDN/@@download/ENCFF855NDN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF125KMQ bigBed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF567MRO 10160776 ENCODE Processing Pipeline 28fb4f3a794abc69395517be412d372b https://www.encodeproject.org/files/ENCFF125KMQ/@@download/ENCFF125KMQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF098QYB bigBed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF660ZJK 11628289 ENCODE Processing Pipeline 87ad20406d0c24456972d7982b162a93 https://www.encodeproject.org/files/ENCFF098QYB/@@download/ENCFF098QYB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF046QCH bed narrowPeak conservative idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF567MRO, ENCFF660ZJK, ENCFF678OVT 573544 ENCODE Processing Pipeline cb8aa5ce2f523b13538fbe916f86c09d https://www.encodeproject.org/files/ENCFF046QCH/@@download/ENCFF046QCH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF429IQW bigBed narrowPeak conservative idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF046QCH 1077643 ENCODE Processing Pipeline fe16f40dd966f5ed42ad629fa36c3e37 https://www.encodeproject.org/files/ENCFF429IQW/@@download/ENCFF429IQW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF148BSH bed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF419RSJ, ENCFF567MRO, ENCFF660ZJK, ENCFF678OVT 568968 ENCODE Processing Pipeline b3ff0cf4ef1e7b90313c4167f9c06bf8 https://www.encodeproject.org/files/ENCFF148BSH/@@download/ENCFF148BSH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF861WUP bigBed narrowPeak optimal idr thresholded peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF148BSH 1072942 ENCODE Processing Pipeline 9c5649a26d1d1cdf41a48e67b3132f22 https://www.encodeproject.org/files/ENCFF861WUP/@@download/ENCFF861WUP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF001HBB bam alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBY 236911714 John Stamatoyannopoulos, UW 55766f730df5b3939105070ad9de4aa1 https://www.encodeproject.org/files/ENCFF001HBB/@@download/ENCFF001HBB.bam hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF001HBE bigBed broadPeak hotspots ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XND 2613967 John Stamatoyannopoulos, UW 5c20c79d2f993ca099af5adce34e3372 https://www.encodeproject.org/files/ENCFF001HBE/@@download/ENCFF001HBE.bigBed hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF001HBF bigBed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XNE 578466 John Stamatoyannopoulos, UW 3869f6104bb6aa7f7c58f0a7415053a2 https://www.encodeproject.org/files/ENCFF001HBF/@@download/ENCFF001HBF.bigBed hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF001HBG bigWig raw signal ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 68572020 John Stamatoyannopoulos, UW f2bce0f02a0832be8f66d21f6ff947c5 https://www.encodeproject.org/files/ENCFF001HBG/@@download/ENCFF001HBG.bigWig hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF001HBY fastq reads ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 28 single-ended 441136318 John Stamatoyannopoulos, UW 295ccef6dd178532a6ed0fc589c13b41 https://www.encodeproject.org/files/ENCFF001HBY/@@download/ENCFF001HBY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HBT/ released control low read depth, inconsistent control read length inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF001XND bed broadPeak hotspots ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 1606312 John Stamatoyannopoulos, UW 9de39e067395a841d5c27c1c39f9b457 https://www.encodeproject.org/files/ENCFF001XND/@@download/ENCFF001XND.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF001XNE bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 348426 John Stamatoyannopoulos, UW 0937a2f281cf29fb441eb5ebd93fb187 https://www.encodeproject.org/files/ENCFF001XNE/@@download/ENCFF001XNE.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF002DCF bed narrowPeak optimal idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 54731 ENCODE Consortium Analysis Working Group 596392705bd0e7954538494d7f40be01 https://www.encodeproject.org/files/ENCFF002DCF/@@download/ENCFF002DCF.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF938BTD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF002DCF 147296 ENCODE Consortium be30e6880ccb8a945e8eda4b16db4469 https://www.encodeproject.org/files/ENCFF938BTD/@@download/ENCFF938BTD.bigBed hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF500WXC bam unfiltered alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 28 ENCFF001HBY, ENCFF807MUK 542057637 ENCODE Processing Pipeline 91c53c57f17a19d7863026e1c5bde8e3 https://www.encodeproject.org/files/ENCFF500WXC/@@download/ENCFF500WXC.bam hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF744INV bam unfiltered alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 28 ENCFF001HBY, ENCFF643CGH 543628621 ENCODE Processing Pipeline ad194e722d76f6a90a9358740a87d7bc https://www.encodeproject.org/files/ENCFF744INV/@@download/ENCFF744INV.bam GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF277HVR bam alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 28 ENCFF001HBY, ENCFF807MUK 195492482 ENCODE Processing Pipeline deaf2ef74074e3e098c98b948bd5ac79 https://www.encodeproject.org/files/ENCFF277HVR/@@download/ENCFF277HVR.bam hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF503DXB bam alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 28 ENCFF001HBY, ENCFF643CGH 196025177 ENCODE Processing Pipeline cb10c0fd67fe5a01f1bf57cc801e6250 https://www.encodeproject.org/files/ENCFF503DXB/@@download/ENCFF503DXB.bam GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF237TIZ bigWig fold change over control ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF277HVR, ENCFF719YWQ 79848635 ENCODE Processing Pipeline 4193c9516bfb29907de5f1f5263ab428 https://www.encodeproject.org/files/ENCFF237TIZ/@@download/ENCFF237TIZ.bigWig hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF844FVN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF978PVD 63576 ENCODE Processing Pipeline 369f0e829cf11e6c70b79b05bdcdbe3d https://www.encodeproject.org/files/ENCFF844FVN/@@download/ENCFF844FVN.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF302YOX bigWig signal p-value ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF277HVR, ENCFF719YWQ 198828660 ENCODE Processing Pipeline 0f74713b58d931b9c4ff89f05944b916 https://www.encodeproject.org/files/ENCFF302YOX/@@download/ENCFF302YOX.bigWig hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF978PVD bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF277HVR, ENCFF719YWQ 1065559 ENCODE Processing Pipeline 8081abaedd896f40b8d1005cae14d10c https://www.encodeproject.org/files/ENCFF978PVD/@@download/ENCFF978PVD.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF012APE bigBed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF978PVD 2021046 ENCODE Processing Pipeline bd0e80196e17050acea979ce21b53644 https://www.encodeproject.org/files/ENCFF012APE/@@download/ENCFF012APE.bigBed hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF952TTZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF844FVN 132197 ENCODE Processing Pipeline 8dea83042530ec66c8d124c4db0c54a6 https://www.encodeproject.org/files/ENCFF952TTZ/@@download/ENCFF952TTZ.bigBed hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF365AIJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF765ISS 58429 ENCODE Processing Pipeline c47bd66e9dd5918ed45db69f74deeb8a https://www.encodeproject.org/files/ENCFF365AIJ/@@download/ENCFF365AIJ.bed.gz GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF220GVX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF365AIJ 126403 ENCODE Processing Pipeline fad076e4c09989086793ab67b4aea598 https://www.encodeproject.org/files/ENCFF220GVX/@@download/ENCFF220GVX.bigBed GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF765ISS bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF503DXB, ENCFF572DEU 1045509 ENCODE Processing Pipeline 7c8a7c4c443d45058e51ca12db3fce2f https://www.encodeproject.org/files/ENCFF765ISS/@@download/ENCFF765ISS.bed.gz GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF673FPJ bigWig signal p-value ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF503DXB, ENCFF572DEU 200597629 ENCODE Processing Pipeline 4e87f5c67c602a70ae93af41a843cf8d https://www.encodeproject.org/files/ENCFF673FPJ/@@download/ENCFF673FPJ.bigWig GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF588VGU bigBed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF765ISS 1932896 ENCODE Processing Pipeline 8ea03a94950b2ced8d593e406cb7e60a https://www.encodeproject.org/files/ENCFF588VGU/@@download/ENCFF588VGU.bigBed GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF059OEP bigWig fold change over control ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF503DXB, ENCFF572DEU 79638327 ENCODE Processing Pipeline 913b93f646c4d678dc9b0931afee29db https://www.encodeproject.org/files/ENCFF059OEP/@@download/ENCFF059OEP.bigWig GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF000WCN bam alignments ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WDI 1060629790 Michael Snyder, Stanford 9b9a447f326a130e810d045599378b34 https://www.encodeproject.org/files/ENCFF000WCN/@@download/ENCFF000WCN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCP bigBed narrowPeak peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFE 1197190 Michael Snyder, Stanford 52c9f4a3f18f4a403a0737b3f0128bc4 https://www.encodeproject.org/files/ENCFF000WCP/@@download/ENCFF000WCP.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCQ bam alignments ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WDJ 960017536 Michael Snyder, Stanford 0f4a80b2b374596e519e645c2fe25919 https://www.encodeproject.org/files/ENCFF000WCQ/@@download/ENCFF000WCQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCT bigWig signal ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 454590987 Michael Snyder, Stanford 3b8889bbd0fd94835c11000f4dfd4afb https://www.encodeproject.org/files/ENCFF000WCT/@@download/ENCFF000WCT.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WDI fastq reads ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 756807988 Michael Snyder, Stanford 85ac7a61f57a1baeba0f7b98153ec7a4 https://www.encodeproject.org/files/ENCFF000WDI/@@download/ENCFF000WDI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWF/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF000WDJ fastq reads ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 701196537 Michael Snyder, Stanford 5b537d7b582f9328fee601c299379aa8 https://www.encodeproject.org/files/ENCFF000WDJ/@@download/ENCFF000WDJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWH/ released inconsistent control read length biological replicates with identical biosample insufficient read length ENCFF001VFE bed narrowPeak peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 509096 Michael Snyder, Stanford 3e6e22f62ebd4d945598f66563aa3f77 https://www.encodeproject.org/files/ENCFF001VFE/@@download/ENCFF001VFE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CPK bed narrowPeak optimal idr thresholded peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 757929 ENCODE Consortium Analysis Working Group 90be6eca516f3df86ba962066a7b0f55 https://www.encodeproject.org/files/ENCFF002CPK/@@download/ENCFF002CPK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF395FCS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPK 1566591 ENCODE Consortium 6ea0eddf128d44cb2b9763a1f47c5a11 https://www.encodeproject.org/files/ENCFF395FCS/@@download/ENCFF395FCS.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XAN bam alignments ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAS 1331703572 Kevin Struhl, HMS 8f6b619b42b837eca439d50f984d90f6 https://www.encodeproject.org/files/ENCFF000XAN/@@download/ENCFF000XAN.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAO bam alignments ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAU 1307672053 Kevin Struhl, HMS e358c50025304cc44c5eecf97fb60879 https://www.encodeproject.org/files/ENCFF000XAO/@@download/ENCFF000XAO.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAP bigBed narrowPeak peaks ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHW 95532 Kevin Struhl, HMS a82936034787fe7828da536e6db96ba7 https://www.encodeproject.org/files/ENCFF000XAP/@@download/ENCFF000XAP.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAQ bigWig signal ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 454668297 Kevin Struhl, HMS 60ac8d8bbc8409cdc140e46b128dcdb5 https://www.encodeproject.org/files/ENCFF000XAQ/@@download/ENCFF000XAQ.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XAS fastq reads ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 1061261308 Kevin Struhl, HMS bbaa8ef751c19920f87741911a6897fd https://www.encodeproject.org/files/ENCFF000XAS/@@download/ENCFF000XAS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAU fastq reads ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 1044698902 Kevin Struhl, HMS 526e319e8dcebe85db0a97110f97f06a https://www.encodeproject.org/files/ENCFF000XAU/@@download/ENCFF000XAU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VHW bed narrowPeak peaks ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 7683 Kevin Struhl, HMS 3f30eaa23cf2025ded9601e2ac94959b https://www.encodeproject.org/files/ENCFF001VHW/@@download/ENCFF001VHW.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CRX bed narrowPeak optimal idr thresholded peaks ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 5388 ENCODE Consortium Analysis Working Group 2281830d1b316504434057ff8956cf29 https://www.encodeproject.org/files/ENCFF002CRX/@@download/ENCFF002CRX.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF154SBH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRX 86933 ENCODE Consortium 5d321d145268af08556bbbcbe5978c1a https://www.encodeproject.org/files/ENCFF154SBH/@@download/ENCFF154SBH.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000WVB bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 590209725 Michael Snyder, Stanford 6b3cd26a4786a784ab26f0fd2f461485 https://www.encodeproject.org/files/ENCFF000WVB/@@download/ENCFF000WVB.bam hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WVC bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 601326607 Michael Snyder, Stanford c80eafc7eaafe684af67725317505758 https://www.encodeproject.org/files/ENCFF000WVC/@@download/ENCFF000WVC.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WVD bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VHD 2179871 Michael Snyder, Stanford 792e93407bca0ec613a0621377d3417c https://www.encodeproject.org/files/ENCFF000WVD/@@download/ENCFF000WVD.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVE fastq reads ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1283303331 Michael Snyder, Stanford e3e5837c7eef7d4999d1225a1efae030 https://www.encodeproject.org/files/ENCFF000WVE/@@download/ENCFF000WVE.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVG fastq reads ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1174839024 Michael Snyder, Stanford 3b2acbee5ae13c409519a289c284936d https://www.encodeproject.org/files/ENCFF000WVG/@@download/ENCFF000WVG.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WVI bigWig signal ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 443117298 Michael Snyder, Stanford 9c9414deb4527477a27e33d2307a5f30 https://www.encodeproject.org/files/ENCFF000WVI/@@download/ENCFF000WVI.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VHD bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 903747 Michael Snyder, Stanford 89434db618daa3b538eb18783955b580 https://www.encodeproject.org/files/ENCFF001VHD/@@download/ENCFF001VHD.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CRF bed narrowPeak optimal idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 546325 ENCODE Consortium Analysis Working Group 5957d48fb5af3c4625e5631698512018 https://www.encodeproject.org/files/ENCFF002CRF/@@download/ENCFF002CRF.bed.gz hg19 archived low read length, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF916OQG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CRF 1339214 ENCODE Consortium ef99f5424b2feb19abb36d5540475f40 https://www.encodeproject.org/files/ENCFF916OQG/@@download/ENCFF916OQG.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF145JNZ bam unfiltered alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WVE, ENCFF643CGH 1461646879 ENCODE Processing Pipeline 77231191a8e3e807b83e27c98d17aaed https://www.encodeproject.org/files/ENCFF145JNZ/@@download/ENCFF145JNZ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF018COR bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WVG, ENCFF643CGH 932901617 ENCODE Processing Pipeline 8c6acee00b2dd78da3adfe048b3201bf https://www.encodeproject.org/files/ENCFF018COR/@@download/ENCFF018COR.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF217OHF bam unfiltered alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WVG, ENCFF643CGH 1333910719 ENCODE Processing Pipeline 2e99b508f504790619227d669d8a6b4d https://www.encodeproject.org/files/ENCFF217OHF/@@download/ENCFF217OHF.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF842TOK bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WVE, ENCFF643CGH 1058066427 ENCODE Processing Pipeline cdf6d15e0dfad47e6a028a86387918ef https://www.encodeproject.org/files/ENCFF842TOK/@@download/ENCFF842TOK.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF480JMF bam unfiltered alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WVG, ENCFF807MUK 1328288443 ENCODE Processing Pipeline 8237a4898a4b8e17f69aa4f55049342d https://www.encodeproject.org/files/ENCFF480JMF/@@download/ENCFF480JMF.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF526QOE bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WVE, ENCFF807MUK 1058560092 ENCODE Processing Pipeline 1ddfdeb0ac8f28dbc97cdbf1b556d2dc https://www.encodeproject.org/files/ENCFF526QOE/@@download/ENCFF526QOE.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF268VDS bam unfiltered alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WVE, ENCFF807MUK 1456428910 ENCODE Processing Pipeline 1dde59aef56aeea4eb8ca9b0b71bb4f6 https://www.encodeproject.org/files/ENCFF268VDS/@@download/ENCFF268VDS.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF425RJE bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WVG, ENCFF807MUK 933382533 ENCODE Processing Pipeline fe51cbaac3115a1d63cbf424899238ad https://www.encodeproject.org/files/ENCFF425RJE/@@download/ENCFF425RJE.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF673TAO bigWig signal p-value ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF842TOK 572843311 ENCODE Processing Pipeline ff83ac965bd5196ae77e4edba2be6226 https://www.encodeproject.org/files/ENCFF673TAO/@@download/ENCFF673TAO.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF541QKA bigWig signal p-value ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF018COR, ENCFF513EWK 572896514 ENCODE Processing Pipeline 26bcfb85644351b540cd6bfce05f7fa2 https://www.encodeproject.org/files/ENCFF541QKA/@@download/ENCFF541QKA.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF174DEX bigWig signal p-value ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF018COR, ENCFF513EWK, ENCFF842TOK 765312270 ENCODE Processing Pipeline bc4437bd9a11c45d21e384753d1c7d28 https://www.encodeproject.org/files/ENCFF174DEX/@@download/ENCFF174DEX.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF016TFI bigWig fold change over control ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF842TOK 518924145 ENCODE Processing Pipeline 815bb4c712897f0994e8bd0b9a7baa80 https://www.encodeproject.org/files/ENCFF016TFI/@@download/ENCFF016TFI.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF350OAA bigWig fold change over control ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF018COR, ENCFF513EWK, ENCFF842TOK 853070840 ENCODE Processing Pipeline 4c63c8509fbef9f16884e2d011a04791 https://www.encodeproject.org/files/ENCFF350OAA/@@download/ENCFF350OAA.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF875ANJ bigWig fold change over control ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF018COR, ENCFF513EWK 472780357 ENCODE Processing Pipeline dcd748263c7542f1ca171e624c80e187 https://www.encodeproject.org/files/ENCFF875ANJ/@@download/ENCFF875ANJ.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF479MBC bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF571NAM 13398828 ENCODE Processing Pipeline 2c30fa6d6306e8cb5438c770643edc50 https://www.encodeproject.org/files/ENCFF479MBC/@@download/ENCFF479MBC.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF359NNW bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF195BZU 13330723 ENCODE Processing Pipeline bf2f9a0eb57162d4ccffefd1d3364404 https://www.encodeproject.org/files/ENCFF359NNW/@@download/ENCFF359NNW.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF514BGQ bed narrowPeak optimal idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195BZU, ENCFF328NYX, ENCFF419RSJ, ENCFF571NAM 549571 ENCODE Processing Pipeline 90a77b9cab6dd553e270a2b042c486a3 https://www.encodeproject.org/files/ENCFF514BGQ/@@download/ENCFF514BGQ.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF571NAM bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF842TOK 6015727 ENCODE Processing Pipeline bc40168ab43ee7b4ce46d95d67dd2087 https://www.encodeproject.org/files/ENCFF571NAM/@@download/ENCFF571NAM.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF195BZU bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF018COR, ENCFF513EWK 5992780 ENCODE Processing Pipeline 23a6d031f9e7b6c413fcd028e9b27bb3 https://www.encodeproject.org/files/ENCFF195BZU/@@download/ENCFF195BZU.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF328NYX bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF018COR, ENCFF513EWK, ENCFF842TOK 6677536 ENCODE Processing Pipeline 0fc999129601c62d7783bf7f1f979cfb https://www.encodeproject.org/files/ENCFF328NYX/@@download/ENCFF328NYX.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF662DOB bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF328NYX 13429976 ENCODE Processing Pipeline b8c22ff8a6290a6eae1a757a1e9a4c40 https://www.encodeproject.org/files/ENCFF662DOB/@@download/ENCFF662DOB.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF267ZPC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF878JMO 1207448 ENCODE Processing Pipeline acfd4b1146b4161084eaf92861fb2c95 https://www.encodeproject.org/files/ENCFF267ZPC/@@download/ENCFF267ZPC.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF878JMO bed narrowPeak conservative idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195BZU, ENCFF328NYX, ENCFF419RSJ, ENCFF571NAM 528304 ENCODE Processing Pipeline ad0f3dc7f51fa59fe289d435c916300b https://www.encodeproject.org/files/ENCFF878JMO/@@download/ENCFF878JMO.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF770IIZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF514BGQ 1243357 ENCODE Processing Pipeline 66abfccbccb12498f7d88f3805807145 https://www.encodeproject.org/files/ENCFF770IIZ/@@download/ENCFF770IIZ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF698BCT bigWig signal p-value ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF526QOE, ENCFF599MVB 584774159 ENCODE Processing Pipeline b507a4ef2f286a5ba03c0e1ac41f0906 https://www.encodeproject.org/files/ENCFF698BCT/@@download/ENCFF698BCT.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF010ZZQ bigWig signal p-value ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RJE, ENCFF599MVB 650798803 ENCODE Processing Pipeline db3db929e4e2281fe3765b6ccb797e2c https://www.encodeproject.org/files/ENCFF010ZZQ/@@download/ENCFF010ZZQ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF327DIM bigWig fold change over control ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF526QOE, ENCFF599MVB 516769223 ENCODE Processing Pipeline 0ab24b082ca904dfd3bea21223cf23a7 https://www.encodeproject.org/files/ENCFF327DIM/@@download/ENCFF327DIM.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF284VQZ bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RJE, ENCFF599MVB 5992856 ENCODE Processing Pipeline ad55d0339ba95c498fe05cab0514bc6f https://www.encodeproject.org/files/ENCFF284VQZ/@@download/ENCFF284VQZ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF535BBG bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF411CQI 13433743 ENCODE Processing Pipeline 1587e903f1d273137a35b1d84394ee43 https://www.encodeproject.org/files/ENCFF535BBG/@@download/ENCFF535BBG.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF184HWT bed narrowPeak optimal idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF284VQZ, ENCFF411CQI, ENCFF492CRC 549850 ENCODE Processing Pipeline 416fbc69abb0ccb5c20ee8a1e8214afc https://www.encodeproject.org/files/ENCFF184HWT/@@download/ENCFF184HWT.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF037KDV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF184HWT 1240713 ENCODE Processing Pipeline 8c0be8d4c86ea18f200f399e7a4cb172 https://www.encodeproject.org/files/ENCFF037KDV/@@download/ENCFF037KDV.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF492CRC bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF526QOE, ENCFF599MVB 6018756 ENCODE Processing Pipeline 8430bf521a8ada5c6b0064dbe64af0c2 https://www.encodeproject.org/files/ENCFF492CRC/@@download/ENCFF492CRC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF025UCW bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF284VQZ 13327174 ENCODE Processing Pipeline 09a6ea7a488dd498692b09cd50a91127 https://www.encodeproject.org/files/ENCFF025UCW/@@download/ENCFF025UCW.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF400ESO bigWig fold change over control ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF425RJE, ENCFF526QOE, ENCFF599MVB 867073901 ENCODE Processing Pipeline 545e0fa4acb47d5ea2ac4d7524f556a9 https://www.encodeproject.org/files/ENCFF400ESO/@@download/ENCFF400ESO.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF411CQI bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF425RJE, ENCFF526QOE, ENCFF599MVB 6685249 ENCODE Processing Pipeline 61f1e4f9684573ef782bafcfec674e5f https://www.encodeproject.org/files/ENCFF411CQI/@@download/ENCFF411CQI.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF501IHK bigWig signal p-value ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF425RJE, ENCFF526QOE, ENCFF599MVB 770145776 ENCODE Processing Pipeline 66cfb86d2d0fb3b85373e5ec3ae589ff https://www.encodeproject.org/files/ENCFF501IHK/@@download/ENCFF501IHK.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF924UNQ bigWig fold change over control ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RJE, ENCFF599MVB 475246821 ENCODE Processing Pipeline 88a15a4af0bc8dfb85937348f75db093 https://www.encodeproject.org/files/ENCFF924UNQ/@@download/ENCFF924UNQ.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF108EYW bigBed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF492CRC 13396533 ENCODE Processing Pipeline 7538f21dc5ec17bd15b9642337f442e1 https://www.encodeproject.org/files/ENCFF108EYW/@@download/ENCFF108EYW.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF755JDH bed narrowPeak conservative idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF284VQZ, ENCFF411CQI, ENCFF492CRC 530907 ENCODE Processing Pipeline f324544199e30a74a952579054580211 https://www.encodeproject.org/files/ENCFF755JDH/@@download/ENCFF755JDH.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF612MLD bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF755JDH 1210055 ENCODE Processing Pipeline 6c9798e965578426bfef2553630aabeb https://www.encodeproject.org/files/ENCFF612MLD/@@download/ENCFF612MLD.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XZR bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YAA 241057222 Peggy Farnham, USC 00b743ca6d522ff83a1f6764d3c1d057 https://www.encodeproject.org/files/ENCFF000XZR/@@download/ENCFF000XZR.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF000XZS bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YAE 750260416 Peggy Farnham, USC 412ab07b3d6cf4fa9a7b5fbfe0c3d694 https://www.encodeproject.org/files/ENCFF000XZS/@@download/ENCFF000XZS.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF000XZU bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLH 2503982 Peggy Farnham, USC 82e0a24d8adbb94bbf9c06132526777a https://www.encodeproject.org/files/ENCFF000XZU/@@download/ENCFF000XZU.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF000XZY bigWig signal ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 361526603 Peggy Farnham, USC 2c19374f221281b5dba3bda5e2ab31a5 https://www.encodeproject.org/files/ENCFF000XZY/@@download/ENCFF000XZY.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review, missing derived_from insufficient read depth ENCFF000YAA fastq reads ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 595640631 Peggy Farnham, USC 792590d95c4469ef63c5eeba78b4c4c6 https://www.encodeproject.org/files/ENCFF000YAA/@@download/ENCFF000YAA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YBC/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF000YAE fastq reads ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1651582093 Peggy Farnham, USC 48c2a17c2cefd04a1e7172471cf0292c https://www.encodeproject.org/files/ENCFF000YAE/@@download/ENCFF000YAE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YBC/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF001VLH bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 967702 Peggy Farnham, USC bb599bbd29c0980f153d58c88d28556b https://www.encodeproject.org/files/ENCFF001VLH/@@download/ENCFF001VLH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review, missing derived_from insufficient read depth ENCFF002CVB bed narrowPeak optimal idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 940722 ENCODE Consortium Analysis Working Group 5d2acf42ab0bb9a6d813b266c13b2c3a https://www.encodeproject.org/files/ENCFF002CVB/@@download/ENCFF002CVB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review, missing derived_from insufficient read depth ENCFF371UCN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVB 1727943 ENCODE Consortium 784f11cd627c1511a3c329d677e35a58 https://www.encodeproject.org/files/ENCFF371UCN/@@download/ENCFF371UCN.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF745KEO bam unfiltered alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAA, ENCFF643CGH 677413838 ENCODE Processing Pipeline c2fdfc40fbe92d03f641c6317fc6a505 https://www.encodeproject.org/files/ENCFF745KEO/@@download/ENCFF745KEO.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF097IAS bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAA, ENCFF643CGH 314797114 ENCODE Processing Pipeline 684a7e4b7da223f5fa771f3da39320fd https://www.encodeproject.org/files/ENCFF097IAS/@@download/ENCFF097IAS.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF620HUP bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YAE, ENCFF643CGH 1066371719 ENCODE Processing Pipeline 6078b3a01278235e9bb1e6db0b01491d https://www.encodeproject.org/files/ENCFF620HUP/@@download/ENCFF620HUP.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF031DYX bam unfiltered alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YAE, ENCFF643CGH 1859298953 ENCODE Processing Pipeline 6833120428ca89edb1d20c636e9ab359 https://www.encodeproject.org/files/ENCFF031DYX/@@download/ENCFF031DYX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF601TQG bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAA, ENCFF807MUK 315044988 ENCODE Processing Pipeline 592bd53e5a50250b6e7fe8610c3e1d3b https://www.encodeproject.org/files/ENCFF601TQG/@@download/ENCFF601TQG.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF207OFV bam unfiltered alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAA, ENCFF807MUK 674557353 ENCODE Processing Pipeline 10e436e8c192c553b5bad705cf6eb581 https://www.encodeproject.org/files/ENCFF207OFV/@@download/ENCFF207OFV.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF742DJF bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YAE, ENCFF807MUK 1066670665 ENCODE Processing Pipeline 142253497928e4e9db23168676c73680 https://www.encodeproject.org/files/ENCFF742DJF/@@download/ENCFF742DJF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF316BBC bam unfiltered alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YAE, ENCFF807MUK 1851389162 ENCODE Processing Pipeline e6fbfc792495d491de3df29b1ba7bb69 https://www.encodeproject.org/files/ENCFF316BBC/@@download/ENCFF316BBC.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF599OYY bigWig signal p-value ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF379GUA, ENCFF601TQG, ENCFF742DJF 779117868 ENCODE Processing Pipeline 7e91370c82e493f0785a68a45dfae89b https://www.encodeproject.org/files/ENCFF599OYY/@@download/ENCFF599OYY.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF467KLW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF971LQR 851233 ENCODE Processing Pipeline 57af2f8bd3cbe8afa87a9b673be66396 https://www.encodeproject.org/files/ENCFF467KLW/@@download/ENCFF467KLW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF390MXI bed narrowPeak optimal idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF221BNG, ENCFF387HZM, ENCFF587UQZ 768034 ENCODE Processing Pipeline c6480e664f94e84cc9968f1178d9c24b https://www.encodeproject.org/files/ENCFF390MXI/@@download/ENCFF390MXI.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF149XMW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF390MXI 1508856 ENCODE Processing Pipeline e175a6f7103e16cdddf9b12de17591b5 https://www.encodeproject.org/files/ENCFF149XMW/@@download/ENCFF149XMW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF224DKR bigWig signal p-value ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF742DJF 672293249 ENCODE Processing Pipeline fbb2eb938b61eb9960a86b8ebc85bc4d https://www.encodeproject.org/files/ENCFF224DKR/@@download/ENCFF224DKR.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF670RTL bigWig signal p-value ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF379GUA, ENCFF601TQG 498340000 ENCODE Processing Pipeline ca2d90101a7f814c222d7b5940a492f7 https://www.encodeproject.org/files/ENCFF670RTL/@@download/ENCFF670RTL.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF357AOD bigWig fold change over control ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF379GUA, ENCFF601TQG 257994906 ENCODE Processing Pipeline 17babec9bc1522e86faf260b9f9bf305 https://www.encodeproject.org/files/ENCFF357AOD/@@download/ENCFF357AOD.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF652CIH bigWig fold change over control ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF379GUA, ENCFF601TQG, ENCFF742DJF 775085375 ENCODE Processing Pipeline ca9e5666da6052247e2faed6ad895831 https://www.encodeproject.org/files/ENCFF652CIH/@@download/ENCFF652CIH.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF221BNG bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF379GUA, ENCFF601TQG 4326814 ENCODE Processing Pipeline 05f70fab58f708b8a00ab08b76fafae1 https://www.encodeproject.org/files/ENCFF221BNG/@@download/ENCFF221BNG.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF587UQZ bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF742DJF 5822355 ENCODE Processing Pipeline 7263de0e9d883c1ed6658b47c888d56a https://www.encodeproject.org/files/ENCFF587UQZ/@@download/ENCFF587UQZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF387HZM bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF379GUA, ENCFF601TQG, ENCFF742DJF 6038491 ENCODE Processing Pipeline 664b053bc41f70cac846820d2b5f1068 https://www.encodeproject.org/files/ENCFF387HZM/@@download/ENCFF387HZM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF848ZMU bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF221BNG 9547537 ENCODE Processing Pipeline 7991f19e25b664bf9b78117bd05610ad https://www.encodeproject.org/files/ENCFF848ZMU/@@download/ENCFF848ZMU.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF939QST bigWig fold change over control ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF742DJF 650358322 ENCODE Processing Pipeline f370b8e932aeaf58aec5fc8d306b0609 https://www.encodeproject.org/files/ENCFF939QST/@@download/ENCFF939QST.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF139ENV bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF587UQZ 13451476 ENCODE Processing Pipeline b90a41fbaec5e751bc7b4c4f8bfc75b8 https://www.encodeproject.org/files/ENCFF139ENV/@@download/ENCFF139ENV.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF166DXW bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF387HZM 13561870 ENCODE Processing Pipeline f4bf4d5f47b8f92111fff2cbd65fb5bf https://www.encodeproject.org/files/ENCFF166DXW/@@download/ENCFF166DXW.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF971LQR bed narrowPeak conservative idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF221BNG, ENCFF387HZM, ENCFF587UQZ 493387 ENCODE Processing Pipeline 5ba45f1a2a4cdb8c18c009e58a54d1d6 https://www.encodeproject.org/files/ENCFF971LQR/@@download/ENCFF971LQR.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF931GCN bigWig signal p-value ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF097IAS, ENCFF108PMF, ENCFF620HUP 825092336 ENCODE Processing Pipeline 68b517ec23717b9e63c384264b96f100 https://www.encodeproject.org/files/ENCFF931GCN/@@download/ENCFF931GCN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF766LDR bigWig fold change over control ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF108PMF, ENCFF620HUP 652747812 ENCODE Processing Pipeline c988d1f0d420ebb6b66b81976690e06e https://www.encodeproject.org/files/ENCFF766LDR/@@download/ENCFF766LDR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF854VZK bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF097IAS, ENCFF108PMF 4218663 ENCODE Processing Pipeline af8ccdecdba596f55de79cf9609bbc19 https://www.encodeproject.org/files/ENCFF854VZK/@@download/ENCFF854VZK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF913JJY bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF097IAS, ENCFF108PMF, ENCFF620HUP 6034990 ENCODE Processing Pipeline 4b6462d4e4227ca018ac92905bc93c8a https://www.encodeproject.org/files/ENCFF913JJY/@@download/ENCFF913JJY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF329DKQ bigWig signal p-value ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF108PMF, ENCFF620HUP 700758193 ENCODE Processing Pipeline 20d046f1498d2a389d33e99c52f71151 https://www.encodeproject.org/files/ENCFF329DKQ/@@download/ENCFF329DKQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF329KZK bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF913JJY 13566257 ENCODE Processing Pipeline 386bd8819dc88a59d8e924e11c73743f https://www.encodeproject.org/files/ENCFF329KZK/@@download/ENCFF329KZK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF722HUF bed narrowPeak conservative idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF679RTG, ENCFF854VZK, ENCFF913JJY 493903 ENCODE Processing Pipeline 9618017d0b5a5037de5e58a1b160ffd4 https://www.encodeproject.org/files/ENCFF722HUF/@@download/ENCFF722HUF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF503VLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF327GZX 1517251 ENCODE Processing Pipeline edb6d8740000535495c8c2231be37bdc https://www.encodeproject.org/files/ENCFF503VLF/@@download/ENCFF503VLF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF354XZG bigWig signal p-value ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF097IAS, ENCFF108PMF 549351883 ENCODE Processing Pipeline 9e8ea78976912178299ab8354dbe0356 https://www.encodeproject.org/files/ENCFF354XZG/@@download/ENCFF354XZG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF228GCS bigWig fold change over control ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF097IAS, ENCFF108PMF 257896509 ENCODE Processing Pipeline f6466e92f70290b5415fa32596326d18 https://www.encodeproject.org/files/ENCFF228GCS/@@download/ENCFF228GCS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF822JCS bigWig fold change over control ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF097IAS, ENCFF108PMF, ENCFF620HUP 773616976 ENCODE Processing Pipeline 2bfd863ec811ff5d66508091274ee9e3 https://www.encodeproject.org/files/ENCFF822JCS/@@download/ENCFF822JCS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF389RKR bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF854VZK 9409141 ENCODE Processing Pipeline 2ae9c5c0f4aa62d685093e1ce9ebf719 https://www.encodeproject.org/files/ENCFF389RKR/@@download/ENCFF389RKR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF679RTG bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF108PMF, ENCFF620HUP 5818981 ENCODE Processing Pipeline 4b149b5ac74de046bbd0a4e9b7dcb856 https://www.encodeproject.org/files/ENCFF679RTG/@@download/ENCFF679RTG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF664NBD bigBed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF679RTG 13455210 ENCODE Processing Pipeline e59bce84cff7dce68445bc8408f0db69 https://www.encodeproject.org/files/ENCFF664NBD/@@download/ENCFF664NBD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF487EXX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF722HUF 852028 ENCODE Processing Pipeline d3ca36e95a629f9c2a2ed79707128f9a https://www.encodeproject.org/files/ENCFF487EXX/@@download/ENCFF487EXX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF327GZX bed narrowPeak optimal idr thresholded peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF679RTG, ENCFF854VZK, ENCFF913JJY 774775 ENCODE Processing Pipeline 2f9dd1cafbf9de0f696694adf59bd27c https://www.encodeproject.org/files/ENCFF327GZX/@@download/ENCFF327GZX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF000PHX bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PIJ 851199021 Richard Myers, HAIB 93d6c9b1bb7cc6d837c782651da6f823 https://www.encodeproject.org/files/ENCFF000PHX/@@download/ENCFF000PHX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PHZ bigBed broadPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UFW 1560782 Richard Myers, HAIB 61784a37ae157ed383af28d037905c73 https://www.encodeproject.org/files/ENCFF000PHZ/@@download/ENCFF000PHZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PIA bigBed broadPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UFX 966927 Richard Myers, HAIB b6ffafdbc09d496d92d40c08ecb320ef https://www.encodeproject.org/files/ENCFF000PIA/@@download/ENCFF000PIA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PIC bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PIM 817485499 Richard Myers, HAIB 58bf000b6aa55e2e1ec1edaa08051ef2 https://www.encodeproject.org/files/ENCFF000PIC/@@download/ENCFF000PIC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PID bigWig raw signal ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 52533660 Richard Myers, HAIB c11c604bbf7f432cfc0a18848ab09a07 https://www.encodeproject.org/files/ENCFF000PID/@@download/ENCFF000PID.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PIF bigWig raw signal ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 29603388 Richard Myers, HAIB 334145c8a9b4064d6657b2d0e73740c0 https://www.encodeproject.org/files/ENCFF000PIF/@@download/ENCFF000PIF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000PIJ fastq reads ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 757517270 Richard Myers, HAIB 1c80a776fbc16e0283e8fbf3bfdefd21 https://www.encodeproject.org/files/ENCFF000PIJ/@@download/ENCFF000PIJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PIM fastq reads ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 767574444 Richard Myers, HAIB 3b08c940989c0214218baf15ea61459c https://www.encodeproject.org/files/ENCFF000PIM/@@download/ENCFF000PIM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UFW bed broadPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 839915 Richard Myers, HAIB f8f6f9029d38a8ce2579c5a516559fd5 https://www.encodeproject.org/files/ENCFF001UFW/@@download/ENCFF001UFW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UFX bed broadPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 633974 Richard Myers, HAIB ebd770057f27a31e70d68896489b398d https://www.encodeproject.org/files/ENCFF001UFX/@@download/ENCFF001UFX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002CKJ bed narrowPeak optimal idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1014435 ENCODE Consortium Analysis Working Group 615ea488dc54abb647c6e7d6aaa1a14d https://www.encodeproject.org/files/ENCFF002CKJ/@@download/ENCFF002CKJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF869JXO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKJ 2047375 ENCODE Consortium 530c7366d1c49eca4ac2e57e9d1f7d7c https://www.encodeproject.org/files/ENCFF869JXO/@@download/ENCFF869JXO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF952XAL bam unfiltered alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIM, ENCFF643CGH 971775956 ENCODE Processing Pipeline 760d08ad71ed963df78bec1b1f08e06c https://www.encodeproject.org/files/ENCFF952XAL/@@download/ENCFF952XAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF172IMH bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIM, ENCFF643CGH 497461256 ENCODE Processing Pipeline 4683fa852724476f7680733a22327f9e https://www.encodeproject.org/files/ENCFF172IMH/@@download/ENCFF172IMH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF567DDU bam unfiltered alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIJ, ENCFF643CGH 1014182632 ENCODE Processing Pipeline f22ddacaeab7252e80e77d23926ef7ab https://www.encodeproject.org/files/ENCFF567DDU/@@download/ENCFF567DDU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF563UBP bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIJ, ENCFF643CGH 621267194 ENCODE Processing Pipeline f3b8af2b05bb95480cc463816f279cb9 https://www.encodeproject.org/files/ENCFF563UBP/@@download/ENCFF563UBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF210TQG bam unfiltered alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIM, ENCFF807MUK 968772939 ENCODE Processing Pipeline e5f744bcca2bb0208b3ac46ce843ed46 https://www.encodeproject.org/files/ENCFF210TQG/@@download/ENCFF210TQG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF994UGO bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIM, ENCFF807MUK 497686506 ENCODE Processing Pipeline a0b1d98420a49411e560f62fe856f36c https://www.encodeproject.org/files/ENCFF994UGO/@@download/ENCFF994UGO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF579JDB bam unfiltered alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIJ, ENCFF807MUK 1011793686 ENCODE Processing Pipeline 65160cb503d9e7e2b1b65678fa58f28c https://www.encodeproject.org/files/ENCFF579JDB/@@download/ENCFF579JDB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF074KQO bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIJ, ENCFF807MUK 621446426 ENCODE Processing Pipeline 8ddbbfbbe3d273aebde5c5a412228ad6 https://www.encodeproject.org/files/ENCFF074KQO/@@download/ENCFF074KQO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF812TXA bigWig signal p-value ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF172IMH, ENCFF285LVE, ENCFF943DZB 576149642 ENCODE Processing Pipeline 903c4426a06f8691b7cb119442d12861 https://www.encodeproject.org/files/ENCFF812TXA/@@download/ENCFF812TXA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF900NPG bigWig signal p-value ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF563UBP, ENCFF943DZB 607742198 ENCODE Processing Pipeline 6e74753f7c1d84bf9c6753dd64c1be80 https://www.encodeproject.org/files/ENCFF900NPG/@@download/ENCFF900NPG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF887PSF bigWig signal p-value ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF172IMH, ENCFF285LVE, ENCFF563UBP, ENCFF943DZB 836759456 ENCODE Processing Pipeline 2d3a783dd7e289e1c90258cd73d660ff https://www.encodeproject.org/files/ENCFF887PSF/@@download/ENCFF887PSF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF213LYJ bigWig fold change over control ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF563UBP, ENCFF943DZB 454101039 ENCODE Processing Pipeline f07883f99969ec59e52448cb9e21c4f2 https://www.encodeproject.org/files/ENCFF213LYJ/@@download/ENCFF213LYJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF050QFU bigWig fold change over control ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF172IMH, ENCFF285LVE, ENCFF943DZB 371670807 ENCODE Processing Pipeline bdf5ca9f8e608c3e90ccb7121d96d158 https://www.encodeproject.org/files/ENCFF050QFU/@@download/ENCFF050QFU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF636MYA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF872MGU 1443900 ENCODE Processing Pipeline 28c514d993650eb1c7256056a140c373 https://www.encodeproject.org/files/ENCFF636MYA/@@download/ENCFF636MYA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF529CBU bigWig fold change over control ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF172IMH, ENCFF285LVE, ENCFF563UBP, ENCFF943DZB 678229240 ENCODE Processing Pipeline b9ada3e4f990680da1268617b536c0aa https://www.encodeproject.org/files/ENCFF529CBU/@@download/ENCFF529CBU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF713IOU bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF563UBP, ENCFF943DZB 5554467 ENCODE Processing Pipeline aa1bb48c521eec8e158aed015e1ab1ae https://www.encodeproject.org/files/ENCFF713IOU/@@download/ENCFF713IOU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF687AWV bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF172IMH, ENCFF285LVE, ENCFF943DZB 5217399 ENCODE Processing Pipeline 9c6901d7c1f66746d76771d57cab6ec2 https://www.encodeproject.org/files/ENCFF687AWV/@@download/ENCFF687AWV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF619QTJ bigBed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF830SFZ 11414514 ENCODE Processing Pipeline dd031ee877e9c40a56e562162d2a6a2e https://www.encodeproject.org/files/ENCFF619QTJ/@@download/ENCFF619QTJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF704DSK bed narrowPeak conservative idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF687AWV, ENCFF713IOU, ENCFF830SFZ 772494 ENCODE Processing Pipeline ad2940684d83678e16912cd0bb8ad474 https://www.encodeproject.org/files/ENCFF704DSK/@@download/ENCFF704DSK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF830SFZ bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF172IMH, ENCFF285LVE, ENCFF563UBP, ENCFF943DZB 6013575 ENCODE Processing Pipeline 8af9e5affd4ba91e71120e28d9c3a820 https://www.encodeproject.org/files/ENCFF830SFZ/@@download/ENCFF830SFZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF872MGU bed narrowPeak optimal idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF687AWV, ENCFF713IOU, ENCFF830SFZ 897502 ENCODE Processing Pipeline 4b11b20ee585560d2d465e093d977c27 https://www.encodeproject.org/files/ENCFF872MGU/@@download/ENCFF872MGU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF299DXP bigBed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF713IOU 11252485 ENCODE Processing Pipeline 306d7a5ccfc23074627556632e6ece8b https://www.encodeproject.org/files/ENCFF299DXP/@@download/ENCFF299DXP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF072HZX bigBed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF687AWV 11109425 ENCODE Processing Pipeline 35586e5e18bf6648621e16b0f40e5ae6 https://www.encodeproject.org/files/ENCFF072HZX/@@download/ENCFF072HZX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF268EWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF704DSK 1287658 ENCODE Processing Pipeline 249ae8962a3bf1045c560ce897b13a7e https://www.encodeproject.org/files/ENCFF268EWJ/@@download/ENCFF268EWJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF858ZUJ bigWig signal p-value ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT 584773125 ENCODE Processing Pipeline e079dfef4b50536407bd6e14ddc177f0 https://www.encodeproject.org/files/ENCFF858ZUJ/@@download/ENCFF858ZUJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF339OAE bigWig signal p-value ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 617505013 ENCODE Processing Pipeline a5993283a3a01f82b31c22c013841464 https://www.encodeproject.org/files/ENCFF339OAE/@@download/ENCFF339OAE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF604OMP bigWig fold change over control ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT 454526821 ENCODE Processing Pipeline 5efb549b1df317978d274f6f9945353c https://www.encodeproject.org/files/ENCFF604OMP/@@download/ENCFF604OMP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF898FCL bigWig signal p-value ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 801532196 ENCODE Processing Pipeline 5397cc846d291dd0869525e24e4a2fd5 https://www.encodeproject.org/files/ENCFF898FCL/@@download/ENCFF898FCL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF157CCV bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT 5711586 ENCODE Processing Pipeline 59d72d95c35bacf00f7f0b1a0cdfb2d7 https://www.encodeproject.org/files/ENCFF157CCV/@@download/ENCFF157CCV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF800ENQ bigBed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF157CCV 11443996 ENCODE Processing Pipeline 103450627d8645be53b4b86011973228 https://www.encodeproject.org/files/ENCFF800ENQ/@@download/ENCFF800ENQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF786ABA bigWig fold change over control ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 371695275 ENCODE Processing Pipeline f02d102423714e680b5f966135dbd880 https://www.encodeproject.org/files/ENCFF786ABA/@@download/ENCFF786ABA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF169DCU bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 5219355 ENCODE Processing Pipeline f8f9e17f6114336d07e507400998d026 https://www.encodeproject.org/files/ENCFF169DCU/@@download/ENCFF169DCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF167FCK bigBed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF169DCU 11106028 ENCODE Processing Pipeline 7606ba69ed98a8f13c45c473ae581ab8 https://www.encodeproject.org/files/ENCFF167FCK/@@download/ENCFF167FCK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF723HNL bigWig fold change over control ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 679134531 ENCODE Processing Pipeline c1e59cee2490d6198ecf1cd88e4d6dea https://www.encodeproject.org/files/ENCFF723HNL/@@download/ENCFF723HNL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF245NLP bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 6141612 ENCODE Processing Pipeline 1d59dc69718c3e2b8eab8bc23a64ea5a https://www.encodeproject.org/files/ENCFF245NLP/@@download/ENCFF245NLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF724MHH bigBed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF245NLP 11572414 ENCODE Processing Pipeline cdd961c094e1372aa8af47aeb09f8f4f https://www.encodeproject.org/files/ENCFF724MHH/@@download/ENCFF724MHH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF722GFS bed narrowPeak conservative idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF157CCV, ENCFF169DCU, ENCFF245NLP 789612 ENCODE Processing Pipeline 38a397c26a4bb6b305e286109c4d35a4 https://www.encodeproject.org/files/ENCFF722GFS/@@download/ENCFF722GFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF894NYR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF553PWA 1497621 ENCODE Processing Pipeline fccbee09c5e89919c01cccfdbae31376 https://www.encodeproject.org/files/ENCFF894NYR/@@download/ENCFF894NYR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF506PCG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF722GFS 1321795 ENCODE Processing Pipeline a23c2206bd93cb29ca2b8186860c28d0 https://www.encodeproject.org/files/ENCFF506PCG/@@download/ENCFF506PCG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF553PWA bed narrowPeak optimal idr thresholded peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF157CCV, ENCFF169DCU, ENCFF245NLP 926013 ENCODE Processing Pipeline 3400c823c9ffb82c25a3addbaa5fa42a https://www.encodeproject.org/files/ENCFF553PWA/@@download/ENCFF553PWA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000NLJ bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NLT 1066275458 Richard Myers, HAIB d469e052b5b3778c4d19709cda96cc51 https://www.encodeproject.org/files/ENCFF000NLJ/@@download/ENCFF000NLJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000NLL bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NLU 628774735 Richard Myers, HAIB cfed278a69c3df62b76f731cf4f2582c https://www.encodeproject.org/files/ENCFF000NLL/@@download/ENCFF000NLL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000NLM bigWig raw signal ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 1813133 Richard Myers, HAIB e5a2236f23e359e3a23b26a661536052 https://www.encodeproject.org/files/ENCFF000NLM/@@download/ENCFF000NLM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000NLN bigWig raw signal ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 1144085 Richard Myers, HAIB 82113de3fc0e53e0d856fffbd318c0a5 https://www.encodeproject.org/files/ENCFF000NLN/@@download/ENCFF000NLN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000NLT fastq reads ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 718991596 Richard Myers, HAIB 0137fec67e0fbf65a68f31328129409c https://www.encodeproject.org/files/ENCFF000NLT/@@download/ENCFF000NLT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000NLU fastq reads ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 690493524 Richard Myers, HAIB 997430ddf72a64d624f85d883442f88a https://www.encodeproject.org/files/ENCFF000NLU/@@download/ENCFF000NLU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF514UIR bam unfiltered alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NLU, ENCFF643CGH 834393087 ENCODE Processing Pipeline 09e180465dfd98cbfb4fdc3339d06809 https://www.encodeproject.org/files/ENCFF514UIR/@@download/ENCFF514UIR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF703HXP bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NLT, ENCFF643CGH 530783851 ENCODE Processing Pipeline 2041b2806ad079726fc3c99b017ebbb1 https://www.encodeproject.org/files/ENCFF703HXP/@@download/ENCFF703HXP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF820TDD bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NLU, ENCFF643CGH 351530786 ENCODE Processing Pipeline d4e15fd35f394bfe77c3279eb9a06479 https://www.encodeproject.org/files/ENCFF820TDD/@@download/ENCFF820TDD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF893RWF bam unfiltered alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NLT, ENCFF643CGH 937001836 ENCODE Processing Pipeline 5243e370bd25b6f835f89afbedff31d4 https://www.encodeproject.org/files/ENCFF893RWF/@@download/ENCFF893RWF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF462RUD bam unfiltered alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NLU, ENCFF807MUK 832056099 ENCODE Processing Pipeline b953d1fcf8e4889e36317ac3a59fe8ab https://www.encodeproject.org/files/ENCFF462RUD/@@download/ENCFF462RUD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF902HRT bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NLU, ENCFF807MUK 351750846 ENCODE Processing Pipeline 88c6db8a1daef2c61d7a78bfef5560ea https://www.encodeproject.org/files/ENCFF902HRT/@@download/ENCFF902HRT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF277EKP bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NLT, ENCFF807MUK 531120311 ENCODE Processing Pipeline f53f136d47c087f6898016ec8d67b6d0 https://www.encodeproject.org/files/ENCFF277EKP/@@download/ENCFF277EKP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF972IRG bam unfiltered alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NLT, ENCFF807MUK 934460432 ENCODE Processing Pipeline 8fc62a3c2df0e1a59e0d741e7bd5f070 https://www.encodeproject.org/files/ENCFF972IRG/@@download/ENCFF972IRG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF432BTN bigWig signal p-value ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF820TDD 446033178 ENCODE Processing Pipeline 629d94c94f31cfeece0729ef38d8ecdb https://www.encodeproject.org/files/ENCFF432BTN/@@download/ENCFF432BTN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF395NHS bigWig signal p-value ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF703HXP 441031563 ENCODE Processing Pipeline f1246581583c31669f09d43c0e7d682d https://www.encodeproject.org/files/ENCFF395NHS/@@download/ENCFF395NHS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF500TQY bigWig signal p-value ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703HXP, ENCFF820TDD 475581872 ENCODE Processing Pipeline 54dec99915f3bfd0cc9e0c92228e9c31 https://www.encodeproject.org/files/ENCFF500TQY/@@download/ENCFF500TQY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF046LQU bigWig fold change over control ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF703HXP 272366239 ENCODE Processing Pipeline 7226bbfc789e03d158df5ea9c78ebb98 https://www.encodeproject.org/files/ENCFF046LQU/@@download/ENCFF046LQU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF752HOL bigWig fold change over control ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF820TDD 213084991 ENCODE Processing Pipeline 8a3a89edccfccc65487069d66b9be56d https://www.encodeproject.org/files/ENCFF752HOL/@@download/ENCFF752HOL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF276BZU bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703HXP, ENCFF820TDD 4329459 ENCODE Processing Pipeline e5f2ab61f20985979570f60030dbe001 https://www.encodeproject.org/files/ENCFF276BZU/@@download/ENCFF276BZU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF003UEE bigBed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF722YAE 10373602 ENCODE Processing Pipeline 1446aac137aff68d5c90be84c59aaa52 https://www.encodeproject.org/files/ENCFF003UEE/@@download/ENCFF003UEE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF529FSR bigBed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF861ABB 5671964 ENCODE Processing Pipeline b01883e70c97962174ab8589cb33a17a https://www.encodeproject.org/files/ENCFF529FSR/@@download/ENCFF529FSR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF185QLG bigWig fold change over control ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF703HXP, ENCFF820TDD 432116550 ENCODE Processing Pipeline 0c1410f89d41f62855226c88fd1cb1ff https://www.encodeproject.org/files/ENCFF185QLG/@@download/ENCFF185QLG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF722YAE bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF703HXP 4061134 ENCODE Processing Pipeline b28aa34f71dc982d0dceaada0574acc3 https://www.encodeproject.org/files/ENCFF722YAE/@@download/ENCFF722YAE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF861ABB bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF820TDD 2571941 ENCODE Processing Pipeline df7ce360fae079fd66531b26ee98490e https://www.encodeproject.org/files/ENCFF861ABB/@@download/ENCFF861ABB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF584BGR bigBed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276BZU 10871381 ENCODE Processing Pipeline b8072652eaaae38dca93d4369456c934 https://www.encodeproject.org/files/ENCFF584BGR/@@download/ENCFF584BGR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF795JAX bed narrowPeak conservative idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276BZU, ENCFF419RSJ, ENCFF722YAE, ENCFF861ABB 42895 ENCODE Processing Pipeline f67d2f1185a0a5766fb0cd3b3f0b992f https://www.encodeproject.org/files/ENCFF795JAX/@@download/ENCFF795JAX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF377PDM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF279JGE 126329 ENCODE Processing Pipeline 1370428973f481b707a35226f7b4fa09 https://www.encodeproject.org/files/ENCFF377PDM/@@download/ENCFF377PDM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF938WCC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF795JAX 116825 ENCODE Processing Pipeline cb614d03032d2baa5764ce591d44f7f3 https://www.encodeproject.org/files/ENCFF938WCC/@@download/ENCFF938WCC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF279JGE bed narrowPeak optimal idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276BZU, ENCFF419RSJ, ENCFF722YAE, ENCFF861ABB 50002 ENCODE Processing Pipeline 8e8e993a0706c36d4e02ab2aa83aaebe https://www.encodeproject.org/files/ENCFF279JGE/@@download/ENCFF279JGE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF039KPI bigWig signal p-value ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF279XQE 413276646 ENCODE Processing Pipeline d388b9ea594872316fed7fd87198c5f9 https://www.encodeproject.org/files/ENCFF039KPI/@@download/ENCFF039KPI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF624GDA bigWig fold change over control ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF277EKP, ENCFF279XQE, ENCFF902HRT 431047311 ENCODE Processing Pipeline 83bf31d435b8cc92237290e8f0b17440 https://www.encodeproject.org/files/ENCFF624GDA/@@download/ENCFF624GDA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF249AVT bigWig fold change over control ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF279XQE 272420197 ENCODE Processing Pipeline 7465c1cfafd9b5f3a6b51fc1537e5815 https://www.encodeproject.org/files/ENCFF249AVT/@@download/ENCFF249AVT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF867GZL bigWig signal p-value ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF902HRT 381759712 ENCODE Processing Pipeline 1ac83672178f4b8e465881f0021c9df7 https://www.encodeproject.org/files/ENCFF867GZL/@@download/ENCFF867GZL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF429BTA bigBed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF775ACP 5640832 ENCODE Processing Pipeline 150d65df5ed2b09ea44212ad293b3360 https://www.encodeproject.org/files/ENCFF429BTA/@@download/ENCFF429BTA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF569OUY bigBed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF630EHJ 10892905 ENCODE Processing Pipeline b3707a9ba0ad76a6c9a9f1cb9ec0fd52 https://www.encodeproject.org/files/ENCFF569OUY/@@download/ENCFF569OUY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF679YHI bigWig signal p-value ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF277EKP, ENCFF279XQE, ENCFF902HRT 543615136 ENCODE Processing Pipeline ba8c38edee3dc446b143301a49547f18 https://www.encodeproject.org/files/ENCFF679YHI/@@download/ENCFF679YHI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF663APW bigWig fold change over control ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF902HRT 213647369 ENCODE Processing Pipeline 41dfb158f4f75a761bdccfca510583f8 https://www.encodeproject.org/files/ENCFF663APW/@@download/ENCFF663APW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF451WEI bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF279XQE 4065145 ENCODE Processing Pipeline d00e3137be38bb46c7bd1a1e9ff01750 https://www.encodeproject.org/files/ENCFF451WEI/@@download/ENCFF451WEI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF775ACP bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF902HRT 2560643 ENCODE Processing Pipeline 4534548ee90e4e26f846c551de748a1b https://www.encodeproject.org/files/ENCFF775ACP/@@download/ENCFF775ACP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF058GVN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF347LKC 116435 ENCODE Processing Pipeline 4e66bd3ced2eeec2a757b9e80a77ecee https://www.encodeproject.org/files/ENCFF058GVN/@@download/ENCFF058GVN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF276MQI bed narrowPeak optimal idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF451WEI, ENCFF630EHJ, ENCFF775ACP 51885 ENCODE Processing Pipeline 300a8deab5912d00fca9e4eb3e75031a https://www.encodeproject.org/files/ENCFF276MQI/@@download/ENCFF276MQI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF630EHJ bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF277EKP, ENCFF279XQE, ENCFF902HRT 4348802 ENCODE Processing Pipeline 627d841725d9e015298ec1c6472ce3e7 https://www.encodeproject.org/files/ENCFF630EHJ/@@download/ENCFF630EHJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF401ZDG bigBed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF451WEI 10341077 ENCODE Processing Pipeline df620d07fcbabceac35243701ffe3d28 https://www.encodeproject.org/files/ENCFF401ZDG/@@download/ENCFF401ZDG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF347LKC bed narrowPeak conservative idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF451WEI, ENCFF630EHJ, ENCFF775ACP 42931 ENCODE Processing Pipeline d7eb9ba178b85f52d0f93fa0196c6521 https://www.encodeproject.org/files/ENCFF347LKC/@@download/ENCFF347LKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF982EGN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF276MQI 127614 ENCODE Processing Pipeline 512344da814b904c8cfaf7ac1c28168a https://www.encodeproject.org/files/ENCFF982EGN/@@download/ENCFF982EGN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OVW bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OWE 723115595 Richard Myers, HAIB 89f5636caa7190fa132975010bef2966 https://www.encodeproject.org/files/ENCFF000OVW/@@download/ENCFF000OVW.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OVX bigBed broadPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UDA 563182 Richard Myers, HAIB efa0f6b2df66adc4a40acc86179bc96e https://www.encodeproject.org/files/ENCFF000OVX/@@download/ENCFF000OVX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OVY bigBed broadPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UDB 769593 Richard Myers, HAIB 56a43dc2f38d31c6ceae239160c42cea https://www.encodeproject.org/files/ENCFF000OVY/@@download/ENCFF000OVY.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OVZ bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OWL 576058113 Richard Myers, HAIB de26ab4f1478eed2f297f18c169969fa https://www.encodeproject.org/files/ENCFF000OVZ/@@download/ENCFF000OVZ.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OWB bigWig raw signal ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 13093049 Richard Myers, HAIB 010302eeb7441bf9dd807a7c82ef1dfc https://www.encodeproject.org/files/ENCFF000OWB/@@download/ENCFF000OWB.bigWig hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OWC bigWig raw signal ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 16608340 Richard Myers, HAIB 7bf1ac23475b9215c8156dd80de3d97b https://www.encodeproject.org/files/ENCFF000OWC/@@download/ENCFF000OWC.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OWE fastq reads ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 692915811 Richard Myers, HAIB 193799cc5d08e710b4e091fea90abaf6 https://www.encodeproject.org/files/ENCFF000OWE/@@download/ENCFF000OWE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, low read depth biological replicates with identical biosample ENCFF000OWL fastq reads ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 651671705 Richard Myers, HAIB 7b71c01117da2960e808150b98a13fc5 https://www.encodeproject.org/files/ENCFF000OWL/@@download/ENCFF000OWL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, low read depth biological replicates with identical biosample ENCFF001UDA bed broadPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 385731 Richard Myers, HAIB c38e5ab6677386a69c3ab19e7d20852c https://www.encodeproject.org/files/ENCFF001UDA/@@download/ENCFF001UDA.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UDB bed broadPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 419256 Richard Myers, HAIB 94d38a584335e63918a95d5703b2eacb https://www.encodeproject.org/files/ENCFF001UDB/@@download/ENCFF001UDB.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJS bed narrowPeak optimal idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 507608 ENCODE Consortium Analysis Working Group 5ae1a553c320884a6b9f7f1447a88d93 https://www.encodeproject.org/files/ENCFF002CJS/@@download/ENCFF002CJS.bed.gz hg19 archived low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF167CHE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJS 991415 ENCODE Consortium abff8e46a3d78245caa00881a47eed67 https://www.encodeproject.org/files/ENCFF167CHE/@@download/ENCFF167CHE.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF576SZW bam unfiltered alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWE, ENCFF643CGH 894316288 ENCODE Processing Pipeline 9ff4b9915bef38cf3467c73a0a01e9b4 https://www.encodeproject.org/files/ENCFF576SZW/@@download/ENCFF576SZW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF606OTI bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWE, ENCFF643CGH 543595801 ENCODE Processing Pipeline 5b9b482e8b6150aa36d3ba4abf411874 https://www.encodeproject.org/files/ENCFF606OTI/@@download/ENCFF606OTI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF589RCU bam unfiltered alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWL, ENCFF643CGH 870519099 ENCODE Processing Pipeline ceeb75ddf60779453e616b111d053fd8 https://www.encodeproject.org/files/ENCFF589RCU/@@download/ENCFF589RCU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF553NXK bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWL, ENCFF643CGH 540872914 ENCODE Processing Pipeline ca27b9e25ddc9a9cd3b553585b325238 https://www.encodeproject.org/files/ENCFF553NXK/@@download/ENCFF553NXK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF319RMX bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWE, ENCFF807MUK 543967087 ENCODE Processing Pipeline 3d3c21529f02d4a7b5cb8a26189ee65e https://www.encodeproject.org/files/ENCFF319RMX/@@download/ENCFF319RMX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF093BZZ bam unfiltered alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWE, ENCFF807MUK 891591307 ENCODE Processing Pipeline 57dcfe24d7b2b1842ff9a9ac964619a0 https://www.encodeproject.org/files/ENCFF093BZZ/@@download/ENCFF093BZZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF959KAI bam unfiltered alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWL, ENCFF807MUK 867575802 ENCODE Processing Pipeline 4b2dd7f6830c6fab0d07ac4d236774cb https://www.encodeproject.org/files/ENCFF959KAI/@@download/ENCFF959KAI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF410CQF bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWL, ENCFF807MUK 541217998 ENCODE Processing Pipeline 5da80a733e224b5b834d1f4f0345674e https://www.encodeproject.org/files/ENCFF410CQF/@@download/ENCFF410CQF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF590SWX bigWig signal p-value ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF606OTI, ENCFF948LKH 474473572 ENCODE Processing Pipeline f68eecf92f5c055e43b32cc842ade045 https://www.encodeproject.org/files/ENCFF590SWX/@@download/ENCFF590SWX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF516AHS bigWig signal p-value ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF553NXK, ENCFF606OTI, ENCFF948LKH 496474404 ENCODE Processing Pipeline 7a022aed44049ea05aa2ea7434cd4192 https://www.encodeproject.org/files/ENCFF516AHS/@@download/ENCFF516AHS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF477FIC bigWig signal p-value ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF553NXK, ENCFF948LKH 463350698 ENCODE Processing Pipeline 483065e7df2b87fc0bd0d2f103100047 https://www.encodeproject.org/files/ENCFF477FIC/@@download/ENCFF477FIC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF511BGE bigWig fold change over control ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF606OTI, ENCFF948LKH 256461609 ENCODE Processing Pipeline 040bd0b5eff28078c65926a9698d46f0 https://www.encodeproject.org/files/ENCFF511BGE/@@download/ENCFF511BGE.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF708QRS bigWig fold change over control ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF553NXK, ENCFF948LKH 285818102 ENCODE Processing Pipeline 8640c2d50fe02c55980864138a62f0a9 https://www.encodeproject.org/files/ENCFF708QRS/@@download/ENCFF708QRS.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF133IZI bigWig fold change over control ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF553NXK, ENCFF606OTI, ENCFF948LKH 463308130 ENCODE Processing Pipeline ba9de76012062e7dc354671ec3a74ea4 https://www.encodeproject.org/files/ENCFF133IZI/@@download/ENCFF133IZI.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF538TMU bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF606OTI, ENCFF948LKH 4148309 ENCODE Processing Pipeline bd2b705ce46f1b769f385adc68270fe0 https://www.encodeproject.org/files/ENCFF538TMU/@@download/ENCFF538TMU.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF255IQC bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF553NXK, ENCFF606OTI, ENCFF948LKH 5155597 ENCODE Processing Pipeline 92418fdbf95707807bba1f332fdd7466 https://www.encodeproject.org/files/ENCFF255IQC/@@download/ENCFF255IQC.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF567TGY bigBed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF538TMU 8453104 ENCODE Processing Pipeline f7b75f3f25eec6809bea78025c34bccf https://www.encodeproject.org/files/ENCFF567TGY/@@download/ENCFF567TGY.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF494WMB bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF553NXK, ENCFF948LKH 4490419 ENCODE Processing Pipeline 43103881fc103f1b73998ac63ff85d04 https://www.encodeproject.org/files/ENCFF494WMB/@@download/ENCFF494WMB.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF639CHT bigBed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF494WMB 10791871 ENCODE Processing Pipeline ad7daaf654f0727d282f931dc69ad32f https://www.encodeproject.org/files/ENCFF639CHT/@@download/ENCFF639CHT.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF770USX bed narrowPeak conservative idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255IQC, ENCFF419RSJ, ENCFF494WMB, ENCFF538TMU 514742 ENCODE Processing Pipeline 3253d90c197c487ef4d5e13d27992af1 https://www.encodeproject.org/files/ENCFF770USX/@@download/ENCFF770USX.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF589OPI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF770USX 983064 ENCODE Processing Pipeline 18195826a443b5784f11e158c4b7129b https://www.encodeproject.org/files/ENCFF589OPI/@@download/ENCFF589OPI.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF024TQE bigBed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255IQC 11502126 ENCODE Processing Pipeline 5a19c1650e4a04e79e69723f865e02bc https://www.encodeproject.org/files/ENCFF024TQE/@@download/ENCFF024TQE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF699HXL bed narrowPeak optimal idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF255IQC, ENCFF419RSJ, ENCFF494WMB, ENCFF538TMU 534069 ENCODE Processing Pipeline e0651aa4696007dd00ff5a3d9c993f46 https://www.encodeproject.org/files/ENCFF699HXL/@@download/ENCFF699HXL.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF735SNM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF699HXL 1011242 ENCODE Processing Pipeline 60272bf5838c70a80305d7d73aa7bc8d https://www.encodeproject.org/files/ENCFF735SNM/@@download/ENCFF735SNM.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF827EDA bigWig signal p-value ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF319RMX, ENCFF356DXM 427682545 ENCODE Processing Pipeline 8e1888266dcb2b54e4d12dd139d42b59 https://www.encodeproject.org/files/ENCFF827EDA/@@download/ENCFF827EDA.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF557QIR bigWig fold change over control ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF319RMX, ENCFF356DXM 258741898 ENCODE Processing Pipeline eb1dd7ac597b69fd81246eab9bd91eaa https://www.encodeproject.org/files/ENCFF557QIR/@@download/ENCFF557QIR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF656HMK bigBed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF868HHE 10738808 ENCODE Processing Pipeline d408711a863028b715f15769f8c67053 https://www.encodeproject.org/files/ENCFF656HMK/@@download/ENCFF656HMK.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF358BEF bed narrowPeak optimal idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF074EWX, ENCFF433NME, ENCFF868HHE 527733 ENCODE Processing Pipeline 3094c785a738fc27832b7fe913c3d950 https://www.encodeproject.org/files/ENCFF358BEF/@@download/ENCFF358BEF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF868HHE bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF410CQF 4456330 ENCODE Processing Pipeline c9be9f83053fcb095365c34844348642 https://www.encodeproject.org/files/ENCFF868HHE/@@download/ENCFF868HHE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF494IJM bigBed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF433NME 8442556 ENCODE Processing Pipeline 06c53b4cc3b64cf9ed464c997b5c83b9 https://www.encodeproject.org/files/ENCFF494IJM/@@download/ENCFF494IJM.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF306DCD bigBed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074EWX 11503653 ENCODE Processing Pipeline 8c166d18a07a6958aed17cbb4912f201 https://www.encodeproject.org/files/ENCFF306DCD/@@download/ENCFF306DCD.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF787USU bigWig signal p-value ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF410CQF 379898505 ENCODE Processing Pipeline 4c95f6cd1b94b423b857e29813a2578d https://www.encodeproject.org/files/ENCFF787USU/@@download/ENCFF787USU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF011GBQ bigWig signal p-value ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF319RMX, ENCFF356DXM, ENCFF410CQF 496858273 ENCODE Processing Pipeline e3db99b5f731017b6159e172bce5811f https://www.encodeproject.org/files/ENCFF011GBQ/@@download/ENCFF011GBQ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF324IKF bigWig fold change over control ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF319RMX, ENCFF356DXM, ENCFF410CQF 463537977 ENCODE Processing Pipeline 8d2d9b6c35c2ba2709d2fd3cc043b765 https://www.encodeproject.org/files/ENCFF324IKF/@@download/ENCFF324IKF.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF433NME bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF319RMX, ENCFF356DXM 4147598 ENCODE Processing Pipeline 8b2e89d72faad863a6227d04785d7ebf https://www.encodeproject.org/files/ENCFF433NME/@@download/ENCFF433NME.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF074EWX bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF319RMX, ENCFF356DXM, ENCFF410CQF 5158247 ENCODE Processing Pipeline 8820dc4ce604b06249a1f2cd012db455 https://www.encodeproject.org/files/ENCFF074EWX/@@download/ENCFF074EWX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF718LDX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF278HEE 983143 ENCODE Processing Pipeline 5b5fca7d5d2a1f641a5c5b6331c6aec0 https://www.encodeproject.org/files/ENCFF718LDX/@@download/ENCFF718LDX.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF503BKG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF358BEF 1001911 ENCODE Processing Pipeline c1457cb3eeb2903b4bbd1b672974494f https://www.encodeproject.org/files/ENCFF503BKG/@@download/ENCFF503BKG.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF578LZM bigWig fold change over control ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF410CQF 287800489 ENCODE Processing Pipeline 986f88d167d7e09ec5455ff9af5c6465 https://www.encodeproject.org/files/ENCFF578LZM/@@download/ENCFF578LZM.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF278HEE bed narrowPeak conservative idr thresholded peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF074EWX, ENCFF433NME, ENCFF868HHE 514179 ENCODE Processing Pipeline 5984bef0f0e2eaa6de0869d6e437059b https://www.encodeproject.org/files/ENCFF278HEE/@@download/ENCFF278HEE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000PSS bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PTF 798342514 Richard Myers, HAIB af1342d412b75ae077029786759993aa https://www.encodeproject.org/files/ENCFF000PSS/@@download/ENCFF000PSS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PSU bigBed broadPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UIG 439839 Richard Myers, HAIB d4a22bc6709b983094ecaf1ba8c67f2e https://www.encodeproject.org/files/ENCFF000PSU/@@download/ENCFF000PSU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PSV bigBed broadPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UIH 337056 Richard Myers, HAIB a94886af6cadecc8f6b7f5f8fef23c83 https://www.encodeproject.org/files/ENCFF000PSV/@@download/ENCFF000PSV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PSX bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PTI 1411287919 Richard Myers, HAIB 55fe38aebd657859d2209a2e3bc30f48 https://www.encodeproject.org/files/ENCFF000PSX/@@download/ENCFF000PSX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PSZ bigWig raw signal ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 1 11306387 Richard Myers, HAIB 49d5411426f8a5a0adf298bffe19c55d https://www.encodeproject.org/files/ENCFF000PSZ/@@download/ENCFF000PSZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000PTA bigWig raw signal ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 1 21742306 Richard Myers, HAIB 518410d77d01615df212cec11550fd0b https://www.encodeproject.org/files/ENCFF000PTA/@@download/ENCFF000PTA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000PTF fastq reads ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 801836511 Richard Myers, HAIB 36d570ab48a594a7f093a31722977e19 https://www.encodeproject.org/files/ENCFF000PTF/@@download/ENCFF000PTF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PTI fastq reads ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1546820083 Richard Myers, HAIB b9ac95aec6b37e78bd79c6c73149eb75 https://www.encodeproject.org/files/ENCFF000PTI/@@download/ENCFF000PTI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UIG bed broadPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 1 221657 Richard Myers, HAIB 05fe58a307c2500de872dea4054f5926 https://www.encodeproject.org/files/ENCFF001UIG/@@download/ENCFF001UIG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001UIH bed broadPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 1 150315 Richard Myers, HAIB 550c68b11981dbeec7efe851990f98d2 https://www.encodeproject.org/files/ENCFF001UIH/@@download/ENCFF001UIH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CLK bed narrowPeak optimal idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 178287 ENCODE Consortium Analysis Working Group a00c93c5360f52a62646332b7f185658 https://www.encodeproject.org/files/ENCFF002CLK/@@download/ENCFF002CLK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF548AFT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CLK 376315 ENCODE Consortium ea2d7809c38d6315e0c425b636ff1f31 https://www.encodeproject.org/files/ENCFF548AFT/@@download/ENCFF548AFT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF105MNZ bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PTF, ENCFF643CGH 508008558 ENCODE Processing Pipeline c5496b30d83209878e8cb3d59dd672ef https://www.encodeproject.org/files/ENCFF105MNZ/@@download/ENCFF105MNZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF506FSB bam unfiltered alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PTF, ENCFF643CGH 955018133 ENCODE Processing Pipeline 52e308376bd5205d95a7537affe9df1d https://www.encodeproject.org/files/ENCFF506FSB/@@download/ENCFF506FSB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF527VCX bam unfiltered alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PTI, ENCFF643CGH 1509652051 ENCODE Processing Pipeline c3c7f7c5fb300382d311c7ec229cfe9e https://www.encodeproject.org/files/ENCFF527VCX/@@download/ENCFF527VCX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF739SSM bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PTI, ENCFF643CGH 475947461 ENCODE Processing Pipeline c66536d58fb8982f872324199a3ad62b https://www.encodeproject.org/files/ENCFF739SSM/@@download/ENCFF739SSM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF584DLG bam unfiltered alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PTF, ENCFF807MUK 952754518 ENCODE Processing Pipeline 2ec81d1438ad529d1dcd599cc25f78fa https://www.encodeproject.org/files/ENCFF584DLG/@@download/ENCFF584DLG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF710MZA bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PTF, ENCFF807MUK 508341634 ENCODE Processing Pipeline 72978fda62a1e6e08182ea0b4b91f399 https://www.encodeproject.org/files/ENCFF710MZA/@@download/ENCFF710MZA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF687KYQ bam unfiltered alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PTI, ENCFF807MUK 1504417774 ENCODE Processing Pipeline 806e9ecc0ee353059dc65b6da64e013a https://www.encodeproject.org/files/ENCFF687KYQ/@@download/ENCFF687KYQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF030JIY bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PTI, ENCFF807MUK 476261681 ENCODE Processing Pipeline dbd67bb82a1ce0eef26f366b0a2ca964 https://www.encodeproject.org/files/ENCFF030JIY/@@download/ENCFF030JIY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF453YRO bigWig signal p-value ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF739SSM 416641893 ENCODE Processing Pipeline 883429548d00e4a1d34d498ff7b142c6 https://www.encodeproject.org/files/ENCFF453YRO/@@download/ENCFF453YRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF759BLY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF844ZVZ 362478 ENCODE Processing Pipeline 09b9dc343e25344135e1d97736c2d5da https://www.encodeproject.org/files/ENCFF759BLY/@@download/ENCFF759BLY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF055OLH bigWig fold change over control ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF105MNZ, ENCFF175NMQ 271230904 ENCODE Processing Pipeline 907cf4044fead9e2ceff7407be022e29 https://www.encodeproject.org/files/ENCFF055OLH/@@download/ENCFF055OLH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF213LLK bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF739SSM 3925164 ENCODE Processing Pipeline a70c69021a8dd4cea3e339c8a162a489 https://www.encodeproject.org/files/ENCFF213LLK/@@download/ENCFF213LLK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF106JIU bigBed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF143UEB 10983982 ENCODE Processing Pipeline c5536939def6e7cc02728798772b2690 https://www.encodeproject.org/files/ENCFF106JIU/@@download/ENCFF106JIU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF844ZVZ bed narrowPeak conservative idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF143UEB, ENCFF213LLK, ENCFF419RSJ, ENCFF423EJT 171260 ENCODE Processing Pipeline 2ef2ac36ea1f21128b0590e09d295925 https://www.encodeproject.org/files/ENCFF844ZVZ/@@download/ENCFF844ZVZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF845WVE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF953JQD 443291 ENCODE Processing Pipeline a65e0ca6afd76536f5a044411fff1088 https://www.encodeproject.org/files/ENCFF845WVE/@@download/ENCFF845WVE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF601QSB bigWig fold change over control ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF739SSM 253312603 ENCODE Processing Pipeline c9e615b1ae0b27a005e6c718dd372a49 https://www.encodeproject.org/files/ENCFF601QSB/@@download/ENCFF601QSB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF050UEE bigBed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF213LLK 8296546 ENCODE Processing Pipeline 92aafaed2300c448b2b34c707c37e6a6 https://www.encodeproject.org/files/ENCFF050UEE/@@download/ENCFF050UEE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF798SFQ bigWig signal p-value ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF105MNZ, ENCFF175NMQ 441698484 ENCODE Processing Pipeline dda5fc6e672e2d52f307788c53eedeb6 https://www.encodeproject.org/files/ENCFF798SFQ/@@download/ENCFF798SFQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF973TAL bigWig signal p-value ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF105MNZ, ENCFF175NMQ, ENCFF739SSM 489056682 ENCODE Processing Pipeline 7ee29098b85ebe275df790bd3937a5a2 https://www.encodeproject.org/files/ENCFF973TAL/@@download/ENCFF973TAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF842TXL bigWig fold change over control ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF105MNZ, ENCFF175NMQ, ENCFF739SSM 478078492 ENCODE Processing Pipeline 59aeb1271987a2f9b04ee05fafc54d74 https://www.encodeproject.org/files/ENCFF842TXL/@@download/ENCFF842TXL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF423EJT bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF105MNZ, ENCFF175NMQ 4204488 ENCODE Processing Pipeline 63a1a44e19959664c409b00006cd3008 https://www.encodeproject.org/files/ENCFF423EJT/@@download/ENCFF423EJT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF143UEB bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF105MNZ, ENCFF175NMQ, ENCFF739SSM 4878064 ENCODE Processing Pipeline b3aa30ea051fe0e303de77a21fcd92aa https://www.encodeproject.org/files/ENCFF143UEB/@@download/ENCFF143UEB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF254SHQ bigBed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF423EJT 10228214 ENCODE Processing Pipeline 41a2eb53165d017167c168442174eb70 https://www.encodeproject.org/files/ENCFF254SHQ/@@download/ENCFF254SHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF953JQD bed narrowPeak optimal idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF143UEB, ENCFF213LLK, ENCFF419RSJ, ENCFF423EJT 227321 ENCODE Processing Pipeline a4d21133e751d41a9c6334a19196d13c https://www.encodeproject.org/files/ENCFF953JQD/@@download/ENCFF953JQD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF392MFI bigWig signal p-value ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF030JIY, ENCFF382BNF 448358284 ENCODE Processing Pipeline a3a81d9c4bd8629e35f36e4d16b2ca55 https://www.encodeproject.org/files/ENCFF392MFI/@@download/ENCFF392MFI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF247XOF bigWig fold change over control ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF030JIY, ENCFF382BNF, ENCFF710MZA 466469300 ENCODE Processing Pipeline 42d876f5aac957275eb547e86ac41f0d https://www.encodeproject.org/files/ENCFF247XOF/@@download/ENCFF247XOF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF723SOG bigWig signal p-value ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF710MZA 530041254 ENCODE Processing Pipeline 3516fe334cdf3dd6a096641fc088b114 https://www.encodeproject.org/files/ENCFF723SOG/@@download/ENCFF723SOG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF364GVC bigWig fold change over control ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF710MZA 271469576 ENCODE Processing Pipeline 22ee2d0da6be5466b4835dd925267095 https://www.encodeproject.org/files/ENCFF364GVC/@@download/ENCFF364GVC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF331MUK bigWig signal p-value ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF030JIY, ENCFF382BNF, ENCFF710MZA 611968900 ENCODE Processing Pipeline 8f8de982aa4119f7766335c3f38a3193 https://www.encodeproject.org/files/ENCFF331MUK/@@download/ENCFF331MUK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF443ZZV bigWig fold change over control ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF030JIY, ENCFF382BNF 253225932 ENCODE Processing Pipeline 34ff23870bbdbf5e3a8ed422d2a0a151 https://www.encodeproject.org/files/ENCFF443ZZV/@@download/ENCFF443ZZV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF943IEY bigBed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF598OWM 8311695 ENCODE Processing Pipeline 416ec750e666570cf9694bb258617839 https://www.encodeproject.org/files/ENCFF943IEY/@@download/ENCFF943IEY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF973ZCY bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF710MZA 4248723 ENCODE Processing Pipeline d2d3bbbc4cb7e5e3e6bbb5b17306c535 https://www.encodeproject.org/files/ENCFF973ZCY/@@download/ENCFF973ZCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF598OWM bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF030JIY, ENCFF382BNF 3937689 ENCODE Processing Pipeline 39eb24fb2ec92133b5b20f3428aa7fac https://www.encodeproject.org/files/ENCFF598OWM/@@download/ENCFF598OWM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF525ETQ bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF030JIY, ENCFF382BNF, ENCFF710MZA 4949888 ENCODE Processing Pipeline 6ba616590bcdd6212446809eb9dad9ef https://www.encodeproject.org/files/ENCFF525ETQ/@@download/ENCFF525ETQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF819YVX bigBed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF973ZCY 10264317 ENCODE Processing Pipeline fe4cabe6f617ec1c552f2cefb8d06c0e https://www.encodeproject.org/files/ENCFF819YVX/@@download/ENCFF819YVX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF264LQE bed narrowPeak optimal idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF525ETQ, ENCFF598OWM, ENCFF973ZCY 225076 ENCODE Processing Pipeline 7ceb1eb4f2ead35aceb6dac50379a772 https://www.encodeproject.org/files/ENCFF264LQE/@@download/ENCFF264LQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF042ELI bigBed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF525ETQ 11034718 ENCODE Processing Pipeline efa2e8fac53eccae6e1fac429da59020 https://www.encodeproject.org/files/ENCFF042ELI/@@download/ENCFF042ELI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF447GXV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF363GGS 364789 ENCODE Processing Pipeline 75e40adf4ade6fd5b7243f029569b9c4 https://www.encodeproject.org/files/ENCFF447GXV/@@download/ENCFF447GXV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF363GGS bed narrowPeak conservative idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF525ETQ, ENCFF598OWM, ENCFF973ZCY 173135 ENCODE Processing Pipeline f0461b0e0400f8205054a39bfcff64c9 https://www.encodeproject.org/files/ENCFF363GGS/@@download/ENCFF363GGS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF791JQI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF264LQE 439901 ENCODE Processing Pipeline 6561d72ff9b40592d9621e14d6e76ec1 https://www.encodeproject.org/files/ENCFF791JQI/@@download/ENCFF791JQI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000PTZ bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PUJ 1267407258 Richard Myers, HAIB 7a78b2ae3631d75258630e6cf7858a5e https://www.encodeproject.org/files/ENCFF000PTZ/@@download/ENCFF000PTZ.bam hg19 archived low read depth biological replicates with identical biosample ENCFF000PUA bigBed broadPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UIO 649604 Richard Myers, HAIB 4dd258e4924e9c82d25db30361b93d4c https://www.encodeproject.org/files/ENCFF000PUA/@@download/ENCFF000PUA.bigBed hg19 archived low read depth biological replicates with identical biosample ENCFF000PUB bigBed broadPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UIP 900941 Richard Myers, HAIB 8121ee60cbdee20d5b58e06b7691141d https://www.encodeproject.org/files/ENCFF000PUB/@@download/ENCFF000PUB.bigBed hg19 archived low read depth biological replicates with identical biosample ENCFF000PUC bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PUI 1013863140 Richard Myers, HAIB c3b97b62ed404f42fd8a3cddfe787e36 https://www.encodeproject.org/files/ENCFF000PUC/@@download/ENCFF000PUC.bam hg19 archived low read depth biological replicates with identical biosample ENCFF000PUE bigWig raw signal ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 150585822 Richard Myers, HAIB 6b305e12dfa0d48a50646058adba65f0 https://www.encodeproject.org/files/ENCFF000PUE/@@download/ENCFF000PUE.bigWig hg19 archived low read depth biological replicates with identical biosample, missing derived_from ENCFF000PUF bigWig raw signal ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 137848623 Richard Myers, HAIB b31a24a1fc1a334f87f503e5656ab883 https://www.encodeproject.org/files/ENCFF000PUF/@@download/ENCFF000PUF.bigWig hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF000PUI fastq reads ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1081288830 Richard Myers, HAIB 616805fb1b199b1924ee11dc48155e8b https://www.encodeproject.org/files/ENCFF000PUI/@@download/ENCFF000PUI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released low read depth biological replicates with identical biosample ENCFF000PUJ fastq reads ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1306465462 Richard Myers, HAIB 817e6b01150d27884f0f9c89dde36937 https://www.encodeproject.org/files/ENCFF000PUJ/@@download/ENCFF000PUJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released low read depth biological replicates with identical biosample ENCFF001UIO bed broadPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 344762 Richard Myers, HAIB 982246c02556302f2620d5208f246081 https://www.encodeproject.org/files/ENCFF001UIO/@@download/ENCFF001UIO.bed.gz hg19 archived low read depth biological replicates with identical biosample, missing derived_from ENCFF001UIP bed broadPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 561060 Richard Myers, HAIB e5b4ebff459229ac2fa1362ad32ac940 https://www.encodeproject.org/files/ENCFF001UIP/@@download/ENCFF001UIP.bed.gz hg19 archived low read depth missing derived_from, biological replicates with identical biosample ENCFF351FZG bam unfiltered alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUJ, ENCFF643CGH 1370378155 ENCODE Processing Pipeline 79c661b3a0fe3a4bc137d92a85003f33 https://www.encodeproject.org/files/ENCFF351FZG/@@download/ENCFF351FZG.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF794LFP bam unfiltered alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUI, ENCFF643CGH 1106004583 ENCODE Processing Pipeline cd9db0d406f9544f855449b9aa30f5d6 https://www.encodeproject.org/files/ENCFF794LFP/@@download/ENCFF794LFP.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF721MRE bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUJ, ENCFF643CGH 1063217439 ENCODE Processing Pipeline fc51c1b67a25cc7dee62d3c011fa66c4 https://www.encodeproject.org/files/ENCFF721MRE/@@download/ENCFF721MRE.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF668VZA bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUI, ENCFF643CGH 797206765 ENCODE Processing Pipeline 648bac8be70ecbcac741f47afb87f4b4 https://www.encodeproject.org/files/ENCFF668VZA/@@download/ENCFF668VZA.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF522NKK bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUI, ENCFF807MUK 797544118 ENCODE Processing Pipeline 1f0842f9d3befe43eb05abb8e7dd7ef7 https://www.encodeproject.org/files/ENCFF522NKK/@@download/ENCFF522NKK.bam hg19 released low read depth biological replicates with identical biosample ENCFF860HGF bam unfiltered alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUJ, ENCFF807MUK 1367149564 ENCODE Processing Pipeline b59b2b1951f5dd8f15408384ec4404b0 https://www.encodeproject.org/files/ENCFF860HGF/@@download/ENCFF860HGF.bam hg19 released low read depth biological replicates with identical biosample ENCFF052RMO bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUJ, ENCFF807MUK 1063295458 ENCODE Processing Pipeline 0e2586d38072797fdd4d69443c45e734 https://www.encodeproject.org/files/ENCFF052RMO/@@download/ENCFF052RMO.bam hg19 released low read depth biological replicates with identical biosample ENCFF428UAA bam unfiltered alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUI, ENCFF807MUK 1104919539 ENCODE Processing Pipeline 0fba6f97cbbac84a3b7e8a0b1d48ab5d https://www.encodeproject.org/files/ENCFF428UAA/@@download/ENCFF428UAA.bam hg19 released low read depth biological replicates with identical biosample ENCFF494QRC bigWig signal p-value ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF052RMO, ENCFF880DIZ 561310035 ENCODE Processing Pipeline 46423a39408b6d55dfc833376d7215c4 https://www.encodeproject.org/files/ENCFF494QRC/@@download/ENCFF494QRC.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF074QRH bigWig fold change over control ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF052RMO, ENCFF880DIZ 412545502 ENCODE Processing Pipeline 11fe7449f8d74f17be47043004777d8b https://www.encodeproject.org/files/ENCFF074QRH/@@download/ENCFF074QRH.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF304QFS bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF052RMO, ENCFF522NKK, ENCFF880DIZ 6809898 ENCODE Processing Pipeline 06a500b8e378f7af2bba2fb1a6882e29 https://www.encodeproject.org/files/ENCFF304QFS/@@download/ENCFF304QFS.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF292TPG bigBed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF205TFY 12763814 ENCODE Processing Pipeline 47745151b807547eea6ed509b47561fe https://www.encodeproject.org/files/ENCFF292TPG/@@download/ENCFF292TPG.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF809LXT bigBed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF154RFF 12144741 ENCODE Processing Pipeline b9330723b5b01ff950dd3ad4730a0816 https://www.encodeproject.org/files/ENCFF809LXT/@@download/ENCFF809LXT.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF648MQI bed narrowPeak conservative idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF154RFF, ENCFF205TFY, ENCFF304QFS 509199 ENCODE Processing Pipeline 81f479376dbd41485a557fce1f069446 https://www.encodeproject.org/files/ENCFF648MQI/@@download/ENCFF648MQI.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF205TFY bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF052RMO, ENCFF880DIZ 6292088 ENCODE Processing Pipeline 0f455ffd056fa8375ad3a8a18bc2f9e5 https://www.encodeproject.org/files/ENCFF205TFY/@@download/ENCFF205TFY.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF727ZEG bigWig fold change over control ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF052RMO, ENCFF522NKK, ENCFF880DIZ 594478523 ENCODE Processing Pipeline 862eadce9e1d87dcd96d165178c4cd59 https://www.encodeproject.org/files/ENCFF727ZEG/@@download/ENCFF727ZEG.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF989CWG bigWig signal p-value ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF522NKK, ENCFF880DIZ 422407139 ENCODE Processing Pipeline db81fd625e245a342f5b4ef71aa8220e https://www.encodeproject.org/files/ENCFF989CWG/@@download/ENCFF989CWG.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF122JZJ bigWig signal p-value ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF052RMO, ENCFF522NKK, ENCFF880DIZ 510957942 ENCODE Processing Pipeline dec99f417eb47831762f6a963f644946 https://www.encodeproject.org/files/ENCFF122JZJ/@@download/ENCFF122JZJ.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF863IPV bigWig fold change over control ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF522NKK, ENCFF880DIZ 279687618 ENCODE Processing Pipeline 43125fadc8470246138a1db3266578b2 https://www.encodeproject.org/files/ENCFF863IPV/@@download/ENCFF863IPV.bigWig hg19 released low read depth biological replicates with identical biosample ENCFF154RFF bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF522NKK, ENCFF880DIZ 6253602 ENCODE Processing Pipeline bb6744858026875ff2562421bb32a47b https://www.encodeproject.org/files/ENCFF154RFF/@@download/ENCFF154RFF.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF112LTI bigBed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF304QFS 12423375 ENCODE Processing Pipeline 05185e9841e4590f34f7d0c821b3644b https://www.encodeproject.org/files/ENCFF112LTI/@@download/ENCFF112LTI.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF332IKL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF648MQI 967577 ENCODE Processing Pipeline 2f669fb41f20b2230e5ed19e9b933b0e https://www.encodeproject.org/files/ENCFF332IKL/@@download/ENCFF332IKL.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF298QJB bed narrowPeak optimal idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF154RFF, ENCFF205TFY, ENCFF304QFS 604130 ENCODE Processing Pipeline c5f0f633fc962eb133e299133f0e3ed8 https://www.encodeproject.org/files/ENCFF298QJB/@@download/ENCFF298QJB.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF199PDD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF298QJB 1354679 ENCODE Processing Pipeline 1687c839fadd66b8f5e8261a12e94811 https://www.encodeproject.org/files/ENCFF199PDD/@@download/ENCFF199PDD.bigBed hg19 released low read depth biological replicates with identical biosample ENCFF497QFB bigWig signal p-value ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF668VZA, ENCFF721MRE, ENCFF895MWF 510967161 ENCODE Processing Pipeline 5f5cc7c4b51275b68de1f85b037482d2 https://www.encodeproject.org/files/ENCFF497QFB/@@download/ENCFF497QFB.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF166DXT bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF668VZA, ENCFF721MRE, ENCFF895MWF 6810402 ENCODE Processing Pipeline d611b29c378e888706254a3b79b92b9f https://www.encodeproject.org/files/ENCFF166DXT/@@download/ENCFF166DXT.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF711BKQ bigBed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF706NTX 12762710 ENCODE Processing Pipeline e09deaf6e934fa687c4bb7b868759577 https://www.encodeproject.org/files/ENCFF711BKQ/@@download/ENCFF711BKQ.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF305FUT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF445GRG 973130 ENCODE Processing Pipeline 5dfb2bd8c8d14c0a5525126024c0dd96 https://www.encodeproject.org/files/ENCFF305FUT/@@download/ENCFF305FUT.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF612PEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF453CCW 1355539 ENCODE Processing Pipeline f6df22ad0b468e020481484e010a0152 https://www.encodeproject.org/files/ENCFF612PEJ/@@download/ENCFF612PEJ.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF408VIT bigWig fold change over control ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF668VZA, ENCFF895MWF 277069032 ENCODE Processing Pipeline 3b0bcd75889657e2e6571c5313c00531 https://www.encodeproject.org/files/ENCFF408VIT/@@download/ENCFF408VIT.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF706NTX bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF721MRE, ENCFF895MWF 6260900 ENCODE Processing Pipeline 6c3d4c05efd6f7c29f710ebf0a710fee https://www.encodeproject.org/files/ENCFF706NTX/@@download/ENCFF706NTX.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF213FKO bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF668VZA, ENCFF895MWF 6255336 ENCODE Processing Pipeline 9e770d41a9bf603dd028c56075a22a34 https://www.encodeproject.org/files/ENCFF213FKO/@@download/ENCFF213FKO.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF453CCW bed narrowPeak optimal idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF166DXT, ENCFF213FKO, ENCFF419RSJ, ENCFF706NTX 603977 ENCODE Processing Pipeline 2799c870e0f41e4491f0d42efb2c4efc https://www.encodeproject.org/files/ENCFF453CCW/@@download/ENCFF453CCW.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF340QWF bigWig signal p-value ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF668VZA, ENCFF895MWF 427277313 ENCODE Processing Pipeline 129b7287f27b32f85be7129532ed1515 https://www.encodeproject.org/files/ENCFF340QWF/@@download/ENCFF340QWF.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF886LIS bigBed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF213FKO 12145076 ENCODE Processing Pipeline 6dde46f82ede47a67d6f85ec65b4f49e https://www.encodeproject.org/files/ENCFF886LIS/@@download/ENCFF886LIS.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF044XMQ bigWig fold change over control ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF721MRE, ENCFF895MWF 410221862 ENCODE Processing Pipeline 636687b0ccdaf9bc66fbf632c3034cd7 https://www.encodeproject.org/files/ENCFF044XMQ/@@download/ENCFF044XMQ.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF689VDW bigBed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF166DXT 12426496 ENCODE Processing Pipeline 2600bd37d2143adb73faaaeac462dfb8 https://www.encodeproject.org/files/ENCFF689VDW/@@download/ENCFF689VDW.bigBed GRCh38 released low read depth biological replicates with identical biosample ENCFF447IAN bigWig signal p-value ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF721MRE, ENCFF895MWF 474035844 ENCODE Processing Pipeline 1366889a1b3caea05bbb9132cbf39fa6 https://www.encodeproject.org/files/ENCFF447IAN/@@download/ENCFF447IAN.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF771XTJ bigWig fold change over control ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF668VZA, ENCFF721MRE, ENCFF895MWF 589780084 ENCODE Processing Pipeline b142d4cefa3c41055cbd331b0d4962a8 https://www.encodeproject.org/files/ENCFF771XTJ/@@download/ENCFF771XTJ.bigWig GRCh38 released low read depth biological replicates with identical biosample ENCFF445GRG bed narrowPeak conservative idr thresholded peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF166DXT, ENCFF213FKO, ENCFF419RSJ, ENCFF706NTX 512542 ENCODE Processing Pipeline 56fb07d21f5827baf5a6ad803d09f847 https://www.encodeproject.org/files/ENCFF445GRG/@@download/ENCFF445GRG.bed.gz GRCh38 released low read depth biological replicates with identical biosample ENCFF000PWE bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PWX 720538081 Richard Myers, HAIB ebaf8016dcf3df3de025e1252e3c8702 https://www.encodeproject.org/files/ENCFF000PWE/@@download/ENCFF000PWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000PWF bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PWM 557536240 Richard Myers, HAIB 51666bc2804b2fe5ab82358780541359 https://www.encodeproject.org/files/ENCFF000PWF/@@download/ENCFF000PWF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000PWG bigBed broadPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJA 111857 Richard Myers, HAIB 1e15281beb62aaaf35c64701289ad0c1 https://www.encodeproject.org/files/ENCFF000PWG/@@download/ENCFF000PWG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000PWH bigBed broadPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJB 113235 Richard Myers, HAIB 341a3050a12bf3e7280c2f6a9ac7ada5 https://www.encodeproject.org/files/ENCFF000PWH/@@download/ENCFF000PWH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000PWJ bigWig raw signal ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 4132178 Richard Myers, HAIB 6745d65ccbaed5ca873be353470d29c2 https://www.encodeproject.org/files/ENCFF000PWJ/@@download/ENCFF000PWJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000PWK bigWig raw signal ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 3817070 Richard Myers, HAIB e292a5f8ca3b0c72e80e03a8c917aacd https://www.encodeproject.org/files/ENCFF000PWK/@@download/ENCFF000PWK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000PWM fastq reads ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 458943335 Richard Myers, HAIB 7e39870827a7f0cd15cf57baa209be36 https://www.encodeproject.org/files/ENCFF000PWM/@@download/ENCFF000PWM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000PWX fastq reads ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 76 single-ended 1392869617 Richard Myers, HAIB f4447127e090b80ea9dab7f201e53678 https://www.encodeproject.org/files/ENCFF000PWX/@@download/ENCFF000PWX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF001UJA bed broadPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 37409 Richard Myers, HAIB 6fd77f66e0f4d0b77ed4aa658d2e99d0 https://www.encodeproject.org/files/ENCFF001UJA/@@download/ENCFF001UJA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJB bed broadPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 38675 Richard Myers, HAIB 3f18ccd4f8287ec6d4cd8247770797af https://www.encodeproject.org/files/ENCFF001UJB/@@download/ENCFF001UJB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF002CLP bed narrowPeak optimal idr thresholded peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 87373 ENCODE Consortium Analysis Working Group 84b23b96b527536feaeb011ecb3ad402 https://www.encodeproject.org/files/ENCFF002CLP/@@download/ENCFF002CLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF425JRS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLP 217446 ENCODE Consortium 282206bcc3b18c3f0f8b92dc3e8594f9 https://www.encodeproject.org/files/ENCFF425JRS/@@download/ENCFF425JRS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF155DTB bam unfiltered alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWM, ENCFF807MUK 655723262 ENCODE Processing Pipeline 16abde6570ba634984c90c7c346fe4d5 https://www.encodeproject.org/files/ENCFF155DTB/@@download/ENCFF155DTB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF477WUN bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWM, ENCFF807MUK 397215851 ENCODE Processing Pipeline 000529a709d164a7b08e8d9381b02c07 https://www.encodeproject.org/files/ENCFF477WUN/@@download/ENCFF477WUN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF944QTZ bam unfiltered alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWM, ENCFF643CGH 657193655 ENCODE Processing Pipeline 8a38def61e89d0be68234a386f9f4993 https://www.encodeproject.org/files/ENCFF944QTZ/@@download/ENCFF944QTZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF554KEG bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWM, ENCFF643CGH 396985738 ENCODE Processing Pipeline 5de208dd52266608c88b19b9e202a800 https://www.encodeproject.org/files/ENCFF554KEG/@@download/ENCFF554KEG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF570LWC bam unfiltered alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWX, ENCFF807MUK 982724671 ENCODE Processing Pipeline 6624bf8ddb7b8641600fa1a3aae7113d https://www.encodeproject.org/files/ENCFF570LWC/@@download/ENCFF570LWC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF096ONF bam unfiltered alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWX, ENCFF643CGH 984318198 ENCODE Processing Pipeline d77dd3c35a24702b2be39a6f20d703b3 https://www.encodeproject.org/files/ENCFF096ONF/@@download/ENCFF096ONF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF144FIS bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWX, ENCFF807MUK 538905345 ENCODE Processing Pipeline 4ccc9f5f42e756338655459cb70233c1 https://www.encodeproject.org/files/ENCFF144FIS/@@download/ENCFF144FIS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF339YBR bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWX, ENCFF643CGH 538645887 ENCODE Processing Pipeline 755e102a0073dee13ed0d84d5bff6031 https://www.encodeproject.org/files/ENCFF339YBR/@@download/ENCFF339YBR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF185HLZ bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF144FIS, ENCFF477WUN, ENCFF750MIM 4909274 ENCODE Processing Pipeline 5f04cd4551c1346375f9e1b5209e8658 https://www.encodeproject.org/files/ENCFF185HLZ/@@download/ENCFF185HLZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF111ACL bigWig signal p-value ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF144FIS, ENCFF477WUN, ENCFF750MIM 202624620 ENCODE Processing Pipeline bbcdb762f02bf274d36436560b862748 https://www.encodeproject.org/files/ENCFF111ACL/@@download/ENCFF111ACL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF616PGU bigWig fold change over control ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477WUN, ENCFF750MIM 197347743 ENCODE Processing Pipeline ad370558af4533007592f2b31cd20073 https://www.encodeproject.org/files/ENCFF616PGU/@@download/ENCFF616PGU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF626JTH bigWig fold change over control ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF144FIS, ENCFF477WUN, ENCFF750MIM 349306273 ENCODE Processing Pipeline 90ab4462159eea14f8579117d35b0646 https://www.encodeproject.org/files/ENCFF626JTH/@@download/ENCFF626JTH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF048RNJ bigBed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF674BPH 1635474 ENCODE Processing Pipeline 0cba7ff37df01632b5f0f8861d312e46 https://www.encodeproject.org/files/ENCFF048RNJ/@@download/ENCFF048RNJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF699ZGA bigBed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF650YKB 7372238 ENCODE Processing Pipeline 0ea46f83cf243e5fc873d0e8c4527c84 https://www.encodeproject.org/files/ENCFF699ZGA/@@download/ENCFF699ZGA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF861ADT bigBed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185HLZ 10472407 ENCODE Processing Pipeline 15e27ab0725a5ed7044e9419034924e0 https://www.encodeproject.org/files/ENCFF861ADT/@@download/ENCFF861ADT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF267IDK bigWig signal p-value ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF144FIS, ENCFF750MIM 209140686 ENCODE Processing Pipeline b8718cb0cb2e65abf789c258b42765b8 https://www.encodeproject.org/files/ENCFF267IDK/@@download/ENCFF267IDK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF467UPX bigWig signal p-value ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477WUN, ENCFF750MIM 210289059 ENCODE Processing Pipeline f5cada0098d8e886b6d7e7aa2d80c960 https://www.encodeproject.org/files/ENCFF467UPX/@@download/ENCFF467UPX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF565MZY bigWig fold change over control ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF144FIS, ENCFF750MIM 205775466 ENCODE Processing Pipeline a6e883091d38f473297b97d10617ee4d https://www.encodeproject.org/files/ENCFF565MZY/@@download/ENCFF565MZY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF674BPH bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF144FIS, ENCFF750MIM 755262 ENCODE Processing Pipeline 0dd0eeeb0b8df3d7fc9612b201349848 https://www.encodeproject.org/files/ENCFF674BPH/@@download/ENCFF674BPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF650YKB bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477WUN, ENCFF750MIM 3690353 ENCODE Processing Pipeline d43b5690540dd71c1b9f817ded4a79c2 https://www.encodeproject.org/files/ENCFF650YKB/@@download/ENCFF650YKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF203EDM bed narrowPeak optimal idr thresholded peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF185HLZ, ENCFF650YKB, ENCFF674BPH 40925 ENCODE Processing Pipeline 3946dde3684d502243421593940f2481 https://www.encodeproject.org/files/ENCFF203EDM/@@download/ENCFF203EDM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF064TZP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF203EDM 138965 ENCODE Processing Pipeline 502e3f56d69302cf4942e08d4371794b https://www.encodeproject.org/files/ENCFF064TZP/@@download/ENCFF064TZP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF797PZA bigWig signal p-value ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF554KEG, ENCFF772PJM 210187967 ENCODE Processing Pipeline a66ec8fedbc253795b5439026c71137a https://www.encodeproject.org/files/ENCFF797PZA/@@download/ENCFF797PZA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF875ZJG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF496YJC 137578 ENCODE Processing Pipeline 0dac1daf7ff1740cf66c6bff33d52ae3 https://www.encodeproject.org/files/ENCFF875ZJG/@@download/ENCFF875ZJG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF877MYD bigWig signal p-value ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339YBR, ENCFF772PJM 208396701 ENCODE Processing Pipeline bcf8206d1e148f5b314cd703272a40f1 https://www.encodeproject.org/files/ENCFF877MYD/@@download/ENCFF877MYD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF922MWD bigWig signal p-value ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339YBR, ENCFF554KEG, ENCFF772PJM 202492824 ENCODE Processing Pipeline a2cda7c36aada0382889700b65abbe23 https://www.encodeproject.org/files/ENCFF922MWD/@@download/ENCFF922MWD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF228NGU bigWig fold change over control ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339YBR, ENCFF772PJM 204719857 ENCODE Processing Pipeline ce5b36b2fd0b4c4cc093386fbf212d7f https://www.encodeproject.org/files/ENCFF228NGU/@@download/ENCFF228NGU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF193PRL bigWig fold change over control ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF554KEG, ENCFF772PJM 197217602 ENCODE Processing Pipeline bbb2f866c40001674485ca04893371e8 https://www.encodeproject.org/files/ENCFF193PRL/@@download/ENCFF193PRL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF240CAY bigWig fold change over control ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339YBR, ENCFF554KEG, ENCFF772PJM 354079504 ENCODE Processing Pipeline e0a1495b77b49a85b8bfe39616b31494 https://www.encodeproject.org/files/ENCFF240CAY/@@download/ENCFF240CAY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF021MAG bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339YBR, ENCFF772PJM 740067 ENCODE Processing Pipeline 1868d284f096224a23cac87210ff9ae3 https://www.encodeproject.org/files/ENCFF021MAG/@@download/ENCFF021MAG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF569NCI bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF554KEG, ENCFF772PJM 3688898 ENCODE Processing Pipeline aeaf21a2c7cabb34d3867058626708c2 https://www.encodeproject.org/files/ENCFF569NCI/@@download/ENCFF569NCI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF973HTC bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF339YBR, ENCFF554KEG, ENCFF772PJM 4902942 ENCODE Processing Pipeline b88af5fd25ed5478d6473a9d08af76e3 https://www.encodeproject.org/files/ENCFF973HTC/@@download/ENCFF973HTC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF656ZAC bigBed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF021MAG 1605825 ENCODE Processing Pipeline 572b3063710e8d84cb2fd87d6ed8f057 https://www.encodeproject.org/files/ENCFF656ZAC/@@download/ENCFF656ZAC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF895JIJ bigBed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF569NCI 7370051 ENCODE Processing Pipeline e2e58cf1363431fba69b8fbfba332d61 https://www.encodeproject.org/files/ENCFF895JIJ/@@download/ENCFF895JIJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF975KML bigBed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF973HTC 10475428 ENCODE Processing Pipeline 285285daf76357434cb9f21b32495f78 https://www.encodeproject.org/files/ENCFF975KML/@@download/ENCFF975KML.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF496YJC bed narrowPeak optimal idr thresholded peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF021MAG, ENCFF419RSJ, ENCFF569NCI, ENCFF973HTC 39755 ENCODE Processing Pipeline f1fc3159c8dc7811416c2320108d41bb https://www.encodeproject.org/files/ENCFF496YJC/@@download/ENCFF496YJC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000XAV bigBed narrowPeak peaks ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHX 76390 Kevin Struhl, HMS be32354f8a621755cb9ccea1e9a0c1d9 https://www.encodeproject.org/files/ENCFF000XAV/@@download/ENCFF000XAV.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAW bigWig signal ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 454726589 Kevin Struhl, HMS 1d648db1e51cbd03a80ddfcb9a9d7344 https://www.encodeproject.org/files/ENCFF000XAW/@@download/ENCFF000XAW.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XAX bam alignments ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBE 933024698 Kevin Struhl, HMS 4e9281a4cec60a5d058e1940049faaef https://www.encodeproject.org/files/ENCFF000XAX/@@download/ENCFF000XAX.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAY bam alignments ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBD 1325513142 Kevin Struhl, HMS 875d40aa28a00c7bbd88386109d9e85d https://www.encodeproject.org/files/ENCFF000XAY/@@download/ENCFF000XAY.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XBD fastq reads ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 1055372235 Kevin Struhl, HMS dba10cac502b7be8c5b68fd6398956e4 https://www.encodeproject.org/files/ENCFF000XBD/@@download/ENCFF000XBD.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XBE fastq reads ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 695718316 Kevin Struhl, HMS fb1082a7d095f8976f0d75f952373489 https://www.encodeproject.org/files/ENCFF000XBE/@@download/ENCFF000XBE.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VHX bed narrowPeak peaks ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 3323 Kevin Struhl, HMS 0a35392eca5ba8dbb633b6492f39da39 https://www.encodeproject.org/files/ENCFF001VHX/@@download/ENCFF001VHX.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CRY bed narrowPeak optimal idr thresholded peaks ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 8295 ENCODE Consortium Analysis Working Group 9398a1a6df6864705eb7fae3e09199ef https://www.encodeproject.org/files/ENCFF002CRY/@@download/ENCFF002CRY.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF611PQJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRY 98062 ENCODE Consortium 6d15427bc3de320f7aa4e222f51e44c6 https://www.encodeproject.org/files/ENCFF611PQJ/@@download/ENCFF611PQJ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF973BII bam unfiltered alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 100 ENCFF005NCE, ENCFF807MUK, ENCFF932SKI 4268741284 ENCODE Processing Pipeline 914c9e2ab6c0df2369bb4971d697d08a https://www.encodeproject.org/files/ENCFF973BII/@@download/ENCFF973BII.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF530FKM bam unfiltered alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 100 ENCFF093OLE, ENCFF505YGU, ENCFF807MUK 4583413037 ENCODE Processing Pipeline c2e9ea76466a0a03323a02c123167fb2 https://www.encodeproject.org/files/ENCFF530FKM/@@download/ENCFF530FKM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF093OLE fastq reads ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 2 ENCFF505YGU 2154418885 Michael Snyder, Stanford f893e04eadd928f110414f8b2aba5121 SRA:SRR5111061 https://www.encodeproject.org/files/ENCFF093OLE/@@download/ENCFF093OLE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF005NCE fastq reads ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 1 ENCFF932SKI 1959720351 Michael Snyder, Stanford 1c9773d68d6e4923be459e93845f48c0 SRA:SRR5111062 https://www.encodeproject.org/files/ENCFF005NCE/@@download/ENCFF005NCE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF505YGU fastq reads ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 1 100 paired-ended 1 ENCFF093OLE 2095648617 Michael Snyder, Stanford 1d1ea747424d28b07101f720f2022e0f SRA:SRR5111061 https://www.encodeproject.org/files/ENCFF505YGU/@@download/ENCFF505YGU.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF932SKI fastq reads ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 1 100 paired-ended 2 ENCFF005NCE 2015494986 Michael Snyder, Stanford 9ba58f2a5ea7a8009224a33dc563001f SRA:SRR5111062 https://www.encodeproject.org/files/ENCFF932SKI/@@download/ENCFF932SKI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFH/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF461OLA bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 100 ENCFF005NCE, ENCFF807MUK, ENCFF932SKI 3146705378 ENCODE Processing Pipeline 0f905647ac8e561ba2789e60ce7dd7d7 https://www.encodeproject.org/files/ENCFF461OLA/@@download/ENCFF461OLA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF207OPF bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 100 ENCFF093OLE, ENCFF505YGU, ENCFF807MUK 3516175934 ENCODE Processing Pipeline 2a2a853e3f5f8c4483f2cf97e3456681 https://www.encodeproject.org/files/ENCFF207OPF/@@download/ENCFF207OPF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF193LDF bigWig signal p-value ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF207OPF, ENCFF581ZJL 953660042 ENCODE Processing Pipeline 551a3e6cfbcee1ef6236eb3a65bae219 https://www.encodeproject.org/files/ENCFF193LDF/@@download/ENCFF193LDF.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF286HOI bigWig signal p-value ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF461OLA, ENCFF581ZJL 1019713578 ENCODE Processing Pipeline 4d278f94f5c37b5943aeb1b7fdbda7b6 https://www.encodeproject.org/files/ENCFF286HOI/@@download/ENCFF286HOI.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF689KXB bigWig signal p-value ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207OPF, ENCFF461OLA, ENCFF581ZJL 1502112588 ENCODE Processing Pipeline a3d4f4d48ba169eef31c6990f9d1759b https://www.encodeproject.org/files/ENCFF689KXB/@@download/ENCFF689KXB.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF251TLL bigWig fold change over control ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF207OPF, ENCFF581ZJL 1065003607 ENCODE Processing Pipeline 200bd578105bad150ab3d830b69bf016 https://www.encodeproject.org/files/ENCFF251TLL/@@download/ENCFF251TLL.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF521DBV bigWig fold change over control ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF461OLA, ENCFF581ZJL 997850846 ENCODE Processing Pipeline f28a93bd717e2b1efa26f43e8ad06d14 https://www.encodeproject.org/files/ENCFF521DBV/@@download/ENCFF521DBV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF068JOG bigWig fold change over control ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207OPF, ENCFF461OLA, ENCFF581ZJL 1489017332 ENCODE Processing Pipeline 9f8585a5355de8583898074fc6f9dd04 https://www.encodeproject.org/files/ENCFF068JOG/@@download/ENCFF068JOG.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF671OTI bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF207OPF, ENCFF581ZJL 6525471 ENCODE Processing Pipeline a33f2e2aa0d57c1b11a69c5be5a45e49 https://www.encodeproject.org/files/ENCFF671OTI/@@download/ENCFF671OTI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF527DAX bigBed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF671OTI 13292539 ENCODE Processing Pipeline 6d90742f0e44f39cb2e57c6adf34370d https://www.encodeproject.org/files/ENCFF527DAX/@@download/ENCFF527DAX.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF189YGL bigBed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF763LNG 13112441 ENCODE Processing Pipeline 679db2473a7d9632d6aea9172c8ea50a https://www.encodeproject.org/files/ENCFF189YGL/@@download/ENCFF189YGL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF023FAR bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF461OLA, ENCFF581ZJL 6198170 ENCODE Processing Pipeline 5c9f75fe0e7e582caaf556099b29c7c9 https://www.encodeproject.org/files/ENCFF023FAR/@@download/ENCFF023FAR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF763LNG bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207OPF, ENCFF461OLA, ENCFF581ZJL 6962841 ENCODE Processing Pipeline a1a112d8ec82a48b8cd6673b117f2837 https://www.encodeproject.org/files/ENCFF763LNG/@@download/ENCFF763LNG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF702ZWZ bigBed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF023FAR 11135940 ENCODE Processing Pipeline 0f20fdca6d730f0b258f0c8e4d1f3e50 https://www.encodeproject.org/files/ENCFF702ZWZ/@@download/ENCFF702ZWZ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF567GFO bed narrowPeak conservative idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF023FAR, ENCFF671OTI, ENCFF763LNG 26218 ENCODE Processing Pipeline b296639d910bc390f29a14b93aa2e4ff https://www.encodeproject.org/files/ENCFF567GFO/@@download/ENCFF567GFO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF062WWV bigBed narrowPeak conservative idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF567GFO 97781 ENCODE Processing Pipeline 95ad534fe2793873df99ee1c1c7e610a https://www.encodeproject.org/files/ENCFF062WWV/@@download/ENCFF062WWV.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF772QPO bed narrowPeak optimal idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF001TDO, ENCFF023FAR, ENCFF671OTI, ENCFF763LNG 44388 ENCODE Processing Pipeline d43ee2f381e8065adaf48e7520a7473a https://www.encodeproject.org/files/ENCFF772QPO/@@download/ENCFF772QPO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF574JYD bigBed narrowPeak optimal idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF772QPO 124035 ENCODE Processing Pipeline c8059e9758958cc06169c327dc5057e8 https://www.encodeproject.org/files/ENCFF574JYD/@@download/ENCFF574JYD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF569IGT bam unfiltered alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 100 ENCFF005NCE, ENCFF643CGH, ENCFF932SKI 4271188208 ENCODE Processing Pipeline f690d5787f92da44473bd761bc163f52 https://www.encodeproject.org/files/ENCFF569IGT/@@download/ENCFF569IGT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF098EFO bam unfiltered alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 100 ENCFF093OLE, ENCFF505YGU, ENCFF643CGH 4586896492 ENCODE Processing Pipeline 65b4ed103e60f118f498354fe389666b https://www.encodeproject.org/files/ENCFF098EFO/@@download/ENCFF098EFO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF578CKQ bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 100 ENCFF005NCE, ENCFF643CGH, ENCFF932SKI 3147421293 ENCODE Processing Pipeline 981226c9e3eae97907e9176eb13d3d28 https://www.encodeproject.org/files/ENCFF578CKQ/@@download/ENCFF578CKQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF707JIA bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 100 ENCFF093OLE, ENCFF505YGU, ENCFF643CGH 3517687856 ENCODE Processing Pipeline 6f90e43bd8e67a3b6aafd8a3deaf59f4 https://www.encodeproject.org/files/ENCFF707JIA/@@download/ENCFF707JIA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF293TPN bigWig signal p-value ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF707JIA, ENCFF910IKB 943978691 ENCODE Processing Pipeline 9d69cde36bd8bcfec35c1323876417af https://www.encodeproject.org/files/ENCFF293TPN/@@download/ENCFF293TPN.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF487UBI bigWig signal p-value ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF578CKQ, ENCFF910IKB 887945647 ENCODE Processing Pipeline b2fcaa05d810da5e5b4e9bd5c45ccda7 https://www.encodeproject.org/files/ENCFF487UBI/@@download/ENCFF487UBI.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF842NPP bigWig signal p-value ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF578CKQ, ENCFF707JIA, ENCFF910IKB 1455489368 ENCODE Processing Pipeline 91b40955ed1d90440719cec90dc06e55 https://www.encodeproject.org/files/ENCFF842NPP/@@download/ENCFF842NPP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF436AWY bigWig fold change over control ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF707JIA, ENCFF910IKB 1065000085 ENCODE Processing Pipeline 044ecc90f0c16c37f3f3662efde6bfca https://www.encodeproject.org/files/ENCFF436AWY/@@download/ENCFF436AWY.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF731BPQ bigWig fold change over control ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF578CKQ, ENCFF910IKB 992138009 ENCODE Processing Pipeline df2c2025ee07563f19a8c917f8500699 https://www.encodeproject.org/files/ENCFF731BPQ/@@download/ENCFF731BPQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF352FRL bigWig fold change over control ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF578CKQ, ENCFF707JIA, ENCFF910IKB 1515218348 ENCODE Processing Pipeline 177bac79f70cb45f9c64c39b3e56e94e https://www.encodeproject.org/files/ENCFF352FRL/@@download/ENCFF352FRL.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF765MEY bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF707JIA, ENCFF910IKB 6375117 ENCODE Processing Pipeline 8a90718803bbbd2b835c711fd2fcd7c1 https://www.encodeproject.org/files/ENCFF765MEY/@@download/ENCFF765MEY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF549QBY bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF578CKQ, ENCFF910IKB 6057099 ENCODE Processing Pipeline 950b843f21e92580d952e40063f1dddc https://www.encodeproject.org/files/ENCFF549QBY/@@download/ENCFF549QBY.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF039XQE bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF578CKQ, ENCFF707JIA, ENCFF910IKB 6885170 ENCODE Processing Pipeline dcc2a31ca150564a4893c47cbee3f8ae https://www.encodeproject.org/files/ENCFF039XQE/@@download/ENCFF039XQE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF023INC bigBed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF765MEY 13297816 ENCODE Processing Pipeline cf0ca4c1da6ccaf22248c27de01ffa85 https://www.encodeproject.org/files/ENCFF023INC/@@download/ENCFF023INC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF576XWS bigBed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF549QBY 11136806 ENCODE Processing Pipeline 1c0277a4835f703e49a17b0b8ab8f533 https://www.encodeproject.org/files/ENCFF576XWS/@@download/ENCFF576XWS.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF887BJK bigBed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF039XQE 13117741 ENCODE Processing Pipeline 8a3a65765612cc0e7a96f10b7c984a6f https://www.encodeproject.org/files/ENCFF887BJK/@@download/ENCFF887BJK.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF549HMO bed narrowPeak conservative idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF039XQE, ENCFF419RSJ, ENCFF549QBY, ENCFF765MEY 25666 ENCODE Processing Pipeline c31e8d45e093f74fb6a7c5a7e1990ef2 https://www.encodeproject.org/files/ENCFF549HMO/@@download/ENCFF549HMO.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF560OXB bigBed narrowPeak conservative idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF549HMO 97082 ENCODE Processing Pipeline 014b116632805b0d25c0d419eaab5866 https://www.encodeproject.org/files/ENCFF560OXB/@@download/ENCFF560OXB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF207ZEK bed narrowPeak optimal idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF039XQE, ENCFF419RSJ, ENCFF549QBY, ENCFF765MEY 45021 ENCODE Processing Pipeline 55e40305c16312e404edd86ba8de8bc2 https://www.encodeproject.org/files/ENCFF207ZEK/@@download/ENCFF207ZEK.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF487FAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1, 2 ENCFF207ZEK 125586 ENCODE Processing Pipeline 49b4592535abc2b39cbc31161d1e3341 https://www.encodeproject.org/files/ENCFF487FAQ/@@download/ENCFF487FAQ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF000YWV bam alignments ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXH 325430434 Sherman Weissman, Yale 646fb37d23ddb941fda0834fae292c6a https://www.encodeproject.org/files/ENCFF000YWV/@@download/ENCFF000YWV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YWW bam alignments ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YXG 344769705 Sherman Weissman, Yale 719a43b38965fa74b8e6325f7dd6b214 https://www.encodeproject.org/files/ENCFF000YWW/@@download/ENCFF000YWW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YWX bigBed narrowPeak peaks ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOI 699144 Sherman Weissman, Yale 52f05012d76927db0aec94d450c6d73e https://www.encodeproject.org/files/ENCFF000YWX/@@download/ENCFF000YWX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YWY bigWig signal ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 302296850 Sherman Weissman, Yale 86e02c859d476b4fdc69d6ddf4d014ce https://www.encodeproject.org/files/ENCFF000YWY/@@download/ENCFF000YWY.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YXG fastq reads ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 286322171 Sherman Weissman, Yale 6a6755d5f9a2c28a959a3d592128f707 https://www.encodeproject.org/files/ENCFF000YXG/@@download/ENCFF000YXG.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YXH fastq reads ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 263358616 Sherman Weissman, Yale 839c9bbc3f7693e6e07a70a94875390c https://www.encodeproject.org/files/ENCFF000YXH/@@download/ENCFF000YXH.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VOI bed narrowPeak peaks ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 278310 Sherman Weissman, Yale 41d68a9c6796b020e88d2adcf9be1ba3 https://www.encodeproject.org/files/ENCFF001VOI/@@download/ENCFF001VOI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CXR bed narrowPeak optimal idr thresholded peaks ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 372941 ENCODE Consortium Analysis Working Group c05fd64032c0e77d1958bafa8ecad68b https://www.encodeproject.org/files/ENCFF002CXR/@@download/ENCFF002CXR.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF783XWJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXR 993628 ENCODE Consortium 9b55480964b5e32c1de43a045c03783e https://www.encodeproject.org/files/ENCFF783XWJ/@@download/ENCFF783XWJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WEV bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 431312426 Michael Snyder, Stanford 58fa9b54c0f1813f8649e01a83d056ba https://www.encodeproject.org/files/ENCFF000WEV/@@download/ENCFF000WEV.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WEW bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 520084814 Michael Snyder, Stanford a6d1d272aa05267202f89061b0bfa92e https://www.encodeproject.org/files/ENCFF000WEW/@@download/ENCFF000WEW.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WEX bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VFN 2163086 Michael Snyder, Stanford 1bf02bb0fa0f27746b5fc112ac19f41d https://www.encodeproject.org/files/ENCFF000WEX/@@download/ENCFF000WEX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WEY fastq reads ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 827881930 Michael Snyder, Stanford 0397c8004c5f4ded01b6a403a5696cca https://www.encodeproject.org/files/ENCFF000WEY/@@download/ENCFF000WEY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFA fastq reads ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1020129232 Michael Snyder, Stanford 58e19a0d1a46fe0a7edf4c1748565cce https://www.encodeproject.org/files/ENCFF000WFA/@@download/ENCFF000WFA.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WFC bigWig signal ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 373594859 Michael Snyder, Stanford c1d810e401be9dca46648603ab059585 https://www.encodeproject.org/files/ENCFF000WFC/@@download/ENCFF000WFC.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VFN bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 841418 Michael Snyder, Stanford 1916b7427c7e8f7f423c1475c65805a4 https://www.encodeproject.org/files/ENCFF001VFN/@@download/ENCFF001VFN.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CPQ bed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 354983 ENCODE Consortium Analysis Working Group f532c9aab1abb230ed38c56d14833c17 https://www.encodeproject.org/files/ENCFF002CPQ/@@download/ENCFF002CPQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF264HWV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CPQ 891858 ENCODE Consortium 936050a0994627cfb54f0672d1730562 https://www.encodeproject.org/files/ENCFF264HWV/@@download/ENCFF264HWV.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF650KNR bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF643CGH 1028941910 ENCODE Processing Pipeline 45513d73be17326e688e99c4a7b81312 https://www.encodeproject.org/files/ENCFF650KNR/@@download/ENCFF650KNR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780BCV bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF643CGH 835852334 ENCODE Processing Pipeline af057ce9f8af90b8cf305076800cfdfc https://www.encodeproject.org/files/ENCFF780BCV/@@download/ENCFF780BCV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF261NIN bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF643CGH 671727486 ENCODE Processing Pipeline 5e437a7c91772d4f99e8c851d333f3e8 https://www.encodeproject.org/files/ENCFF261NIN/@@download/ENCFF261NIN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF600WBJ bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF643CGH 542771589 ENCODE Processing Pipeline 2d8e790e7728383aac130a20d230b10d https://www.encodeproject.org/files/ENCFF600WBJ/@@download/ENCFF600WBJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF444FLD bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF807MUK 833154847 ENCODE Processing Pipeline 551ee0e1e222aacdd89b57819baee905 https://www.encodeproject.org/files/ENCFF444FLD/@@download/ENCFF444FLD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF644ZOB bam unfiltered alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF807MUK 1026222775 ENCODE Processing Pipeline 1e8d60ca33927221ea371b83f3793e6d https://www.encodeproject.org/files/ENCFF644ZOB/@@download/ENCFF644ZOB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF581YGH bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF807MUK 539830788 ENCODE Processing Pipeline 677f911e7790afd53e66e8b7f0894310 https://www.encodeproject.org/files/ENCFF581YGH/@@download/ENCFF581YGH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF665YWG bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF807MUK 666273860 ENCODE Processing Pipeline f6e8abd753b585ccf0fd3ddcd352dde3 https://www.encodeproject.org/files/ENCFF665YWG/@@download/ENCFF665YWG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF193XZB bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 164423736 ENCODE Processing Pipeline 7353aafcf86064a0d7d176aada18fbeb https://www.encodeproject.org/files/ENCFF193XZB/@@download/ENCFF193XZB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF335IRX bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 230044230 ENCODE Processing Pipeline ded7dc9f96aca55157d880ce5ba6ede5 https://www.encodeproject.org/files/ENCFF335IRX/@@download/ENCFF335IRX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF729ZSP bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF957YRU 621812 ENCODE Processing Pipeline ab1c0ab9b1301feb65a3f99a82ae6e0b https://www.encodeproject.org/files/ENCFF729ZSP/@@download/ENCFF729ZSP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF569VND bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH, ENCFF665YWG 162829492 ENCODE Processing Pipeline b23a69e8ee44ab0e91c029f35ac49b89 https://www.encodeproject.org/files/ENCFF569VND/@@download/ENCFF569VND.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF630PWI bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 4523214 ENCODE Processing Pipeline d588aa903bae23565f688e60e4433892 https://www.encodeproject.org/files/ENCFF630PWI/@@download/ENCFF630PWI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF226QFM bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 242875379 ENCODE Processing Pipeline 0e346c48e96b7de345188c4cb13a481a https://www.encodeproject.org/files/ENCFF226QFM/@@download/ENCFF226QFM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF941AZB bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH, ENCFF665YWG 5115206 ENCODE Processing Pipeline b6adb00e90b38282a2514b4649b10c67 https://www.encodeproject.org/files/ENCFF941AZB/@@download/ENCFF941AZB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF775YRI bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF453YFD 10319786 ENCODE Processing Pipeline 27efa18ed09d063c22bd80f3dbae0259 https://www.encodeproject.org/files/ENCFF775YRI/@@download/ENCFF775YRI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF888NIO bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF941AZB 13079654 ENCODE Processing Pipeline aa59eab82385f7853427137b9abe1478 https://www.encodeproject.org/files/ENCFF888NIO/@@download/ENCFF888NIO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF029IZU bed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF453YFD, ENCFF630PWI, ENCFF941AZB 236279 ENCODE Processing Pipeline b86a3e24028d7517a12ecfc4dd863231 https://www.encodeproject.org/files/ENCFF029IZU/@@download/ENCFF029IZU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF798BTY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF029IZU 516742 ENCODE Processing Pipeline d9ed471a39f51924d7c40306926c6fe6 https://www.encodeproject.org/files/ENCFF798BTY/@@download/ENCFF798BTY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF957YRU bed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF453YFD, ENCFF630PWI, ENCFF941AZB 297607 ENCODE Processing Pipeline 5e70a5136c41813c1a7f9b17b00685f4 https://www.encodeproject.org/files/ENCFF957YRU/@@download/ENCFF957YRU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF717WRD bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF630PWI 10166569 ENCODE Processing Pipeline 1fe886be4ec61d47574ecac663adb52e https://www.encodeproject.org/files/ENCFF717WRD/@@download/ENCFF717WRD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF675XRW bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 74097582 ENCODE Processing Pipeline c0691a5694dbc52c1fdb3be6e4263e11 https://www.encodeproject.org/files/ENCFF675XRW/@@download/ENCFF675XRW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF816KEF bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH, ENCFF665YWG 465669549 ENCODE Processing Pipeline 1c9d7042bf1f6499c67b2a31e296b607 https://www.encodeproject.org/files/ENCFF816KEF/@@download/ENCFF816KEF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF453YFD bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 4232997 ENCODE Processing Pipeline 7c4c672f1c0f3c9cf4efaf1e1b85c80b https://www.encodeproject.org/files/ENCFF453YFD/@@download/ENCFF453YFD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF875LEP bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF261NIN, ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 164557956 ENCODE Processing Pipeline 320e9f82d1aa6140dc9aef711135e725 https://www.encodeproject.org/files/ENCFF875LEP/@@download/ENCFF875LEP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF537BFY bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 4529843 ENCODE Processing Pipeline 828ee67b0c62b87af03bf528674e34da https://www.encodeproject.org/files/ENCFF537BFY/@@download/ENCFF537BFY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF958ONG bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF261NIN, ENCFF477ZKJ 4231573 ENCODE Processing Pipeline 6ffc5bcc7d23a29f2159b035c15daf83 https://www.encodeproject.org/files/ENCFF958ONG/@@download/ENCFF958ONG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611TBS bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF537BFY 10173044 ENCODE Processing Pipeline 2e891f503a928b6a691b8f06675582e8 https://www.encodeproject.org/files/ENCFF611TBS/@@download/ENCFF611TBS.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF419JTY bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF958ONG 10322642 ENCODE Processing Pipeline 6602a713b82745c44e62fc047fa4e2c5 https://www.encodeproject.org/files/ENCFF419JTY/@@download/ENCFF419JTY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF061ZIL bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF261NIN, ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 465228027 ENCODE Processing Pipeline 0439181343de6ea00a064c9367b60abe https://www.encodeproject.org/files/ENCFF061ZIL/@@download/ENCFF061ZIL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF893XHO bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 167294404 ENCODE Processing Pipeline 5019fb21dfceb9ea4093728d858ea1ff https://www.encodeproject.org/files/ENCFF893XHO/@@download/ENCFF893XHO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF726EEW bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 235781104 ENCODE Processing Pipeline 9d054e3a31bd6de4e11c2db1b760b282 https://www.encodeproject.org/files/ENCFF726EEW/@@download/ENCFF726EEW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF631KSG bigWig signal p-value ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF261NIN, ENCFF477ZKJ 74115697 ENCODE Processing Pipeline ccc688980dde417617cdff1eb8a74061 https://www.encodeproject.org/files/ENCFF631KSG/@@download/ENCFF631KSG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF249MMR bigWig fold change over control ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF261NIN, ENCFF477ZKJ 240632043 ENCODE Processing Pipeline f555c1edad0a4382cc79cff6d3dcb5f3 https://www.encodeproject.org/files/ENCFF249MMR/@@download/ENCFF249MMR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF615RPH bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF261NIN, ENCFF477ZKJ, ENCFF600WBJ, ENCFF710SMS 5139714 ENCODE Processing Pipeline 779acbef75815d13c4534193692edb45 https://www.encodeproject.org/files/ENCFF615RPH/@@download/ENCFF615RPH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF761NXV bigBed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF615RPH 13072214 ENCODE Processing Pipeline 91ee6ced58d05af791669ebce7eb383b https://www.encodeproject.org/files/ENCFF761NXV/@@download/ENCFF761NXV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF859GGT bed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF537BFY, ENCFF615RPH, ENCFF958ONG 240334 ENCODE Processing Pipeline 3560051e39908a19a28b61d4d7345f62 https://www.encodeproject.org/files/ENCFF859GGT/@@download/ENCFF859GGT.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF564YCW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF859GGT 520315 ENCODE Processing Pipeline cd2736e735f9b97b6ac529391be91cc1 https://www.encodeproject.org/files/ENCFF564YCW/@@download/ENCFF564YCW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392JWA bed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF537BFY, ENCFF615RPH, ENCFF958ONG 302040 ENCODE Processing Pipeline 49eddba7f71edca9132a90eac0c37865 https://www.encodeproject.org/files/ENCFF392JWA/@@download/ENCFF392JWA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF210LQE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF392JWA 626651 ENCODE Processing Pipeline ea3a890b28a97533cf532ad4c597db6f https://www.encodeproject.org/files/ENCFF210LQE/@@download/ENCFF210LQE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000CBG bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 1 1449071701 Bradley Bernstein, Broad ca2a2a9d0455346d5d1e1b32be3c8dd8 https://www.encodeproject.org/files/ENCFF000CBG/@@download/ENCFF000CBG.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000CBI bigBed broadPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE ENCFF001TAB 3645977 Bradley Bernstein, Broad 036229b245e944463bf4edafa74cef2f https://www.encodeproject.org/files/ENCFF000CBI/@@download/ENCFF000CBI.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000CBJ bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 1 628375040 Bradley Bernstein, Broad c731a6e50ebd5402ef72323308f974bc https://www.encodeproject.org/files/ENCFF000CBJ/@@download/ENCFF000CBJ.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000CBL bigWig signal ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 444965512 Bradley Bernstein, Broad 7a1619623207a408655a3af4c91cb275 https://www.encodeproject.org/files/ENCFF000CBL/@@download/ENCFF000CBL.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF001TAB bed broadPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2319055 Bradley Bernstein, Broad 1e3db8d5a535a0debce601f47bc0b070 https://www.encodeproject.org/files/ENCFF001TAB/@@download/ENCFF001TAB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CEU bed narrowPeak optimal idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 316070 ENCODE Consortium Analysis Working Group 281c4ee8e2b9fc087b8c64b15fb8dcd9 https://www.encodeproject.org/files/ENCFF002CEU/@@download/ENCFF002CEU.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF891FTF bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEU 909473 ENCODE Consortium 1e664867a5b7475a2dff446a69b3dfcd https://www.encodeproject.org/files/ENCFF891FTF/@@download/ENCFF891FTF.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF343WXI fastq reads ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1286619698 Bradley Bernstein, Broad f3aa3602c909bf1b5413b4d195493ea5 https://www.encodeproject.org/files/ENCFF343WXI/@@download/ENCFF343WXI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF148AGP fastq reads ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 2110065269 Bradley Bernstein, Broad a1043d31c8354c385c3208ff4864eb76 https://www.encodeproject.org/files/ENCFF148AGP/@@download/ENCFF148AGP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF989QHY fastq reads ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 1 ENCFF805ZZM 1219281269 Bradley Bernstein, Broad 47e14eede00481611cb293a7de0f264f https://www.encodeproject.org/files/ENCFF989QHY/@@download/ENCFF989QHY.fastq.gz Illumina HiSeq 2000 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, missing controlled_by, severe bottlenecking ENCFF805ZZM fastq reads ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 2 ENCFF989QHY 1228359223 Bradley Bernstein, Broad ca1da8518f1b88aa23e79fbf9c3a8b0c https://www.encodeproject.org/files/ENCFF805ZZM/@@download/ENCFF805ZZM.fastq.gz Illumina HiSeq 2000 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, missing controlled_by, severe bottlenecking ENCFF443WKS bam unfiltered alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF343WXI, ENCFF807MUK 1696183403 ENCODE Processing Pipeline 574585507968864077839c57af76d6a4 https://www.encodeproject.org/files/ENCFF443WKS/@@download/ENCFF443WKS.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF624XFS bam unfiltered alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF148AGP, ENCFF643CGH 2432427896 ENCODE Processing Pipeline 2d8e54d01dee24c57952a403ebec039d https://www.encodeproject.org/files/ENCFF624XFS/@@download/ENCFF624XFS.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF713RXC bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF148AGP, ENCFF643CGH 283908308 ENCODE Processing Pipeline 8fd337f7d85d4c84f80b451f7b1d85c0 https://www.encodeproject.org/files/ENCFF713RXC/@@download/ENCFF713RXC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF849RLM bam unfiltered alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF343WXI, ENCFF643CGH 1702463674 ENCODE Processing Pipeline bc4246b456334d7c960e40e10a15999a https://www.encodeproject.org/files/ENCFF849RLM/@@download/ENCFF849RLM.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF251KZR bam unfiltered alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF148AGP, ENCFF807MUK 2424070986 ENCODE Processing Pipeline 3a9a1c23f7d5f858b503f9a8fd82fb2b https://www.encodeproject.org/files/ENCFF251KZR/@@download/ENCFF251KZR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF550DDF bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF343WXI, ENCFF643CGH 993132337 ENCODE Processing Pipeline 3034a38142f4f1c4420e7955b81ff66c https://www.encodeproject.org/files/ENCFF550DDF/@@download/ENCFF550DDF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF178KOP bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF148AGP, ENCFF807MUK 284217596 ENCODE Processing Pipeline e3a1db0183e4e7b8fab4f57dda7b1217 https://www.encodeproject.org/files/ENCFF178KOP/@@download/ENCFF178KOP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF707DNG bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF343WXI, ENCFF807MUK 993905329 ENCODE Processing Pipeline 468f6bd38d268bbbf48ac3ccdf110424 https://www.encodeproject.org/files/ENCFF707DNG/@@download/ENCFF707DNG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF462RXG bigWig signal p-value ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178KOP, ENCFF574XYY 314345950 ENCODE Processing Pipeline a9ad342ccafbb6b4396de1be62999f86 https://www.encodeproject.org/files/ENCFF462RXG/@@download/ENCFF462RXG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF761RMW bigWig fold change over control ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178KOP, ENCFF574XYY 154095153 ENCODE Processing Pipeline 16bc4d86965ea7cb01b537eb72b8e1ba https://www.encodeproject.org/files/ENCFF761RMW/@@download/ENCFF761RMW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF869RAW bigWig signal p-value ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 623612583 ENCODE Processing Pipeline 5fb21b2a37d210466d22c40839704cd2 https://www.encodeproject.org/files/ENCFF869RAW/@@download/ENCFF869RAW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF200SIL bigWig fold change over control ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 461103895 ENCODE Processing Pipeline e5b43bf193bdb91eb0ee3813f6605162 https://www.encodeproject.org/files/ENCFF200SIL/@@download/ENCFF200SIL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF058KTS bigWig fold change over control ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF178KOP, ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 585447761 ENCODE Processing Pipeline 3492a9bf686886bc9409d7854831c713 https://www.encodeproject.org/files/ENCFF058KTS/@@download/ENCFF058KTS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF528ISK bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178KOP, ENCFF574XYY 4417958 ENCODE Processing Pipeline d3f7cca88a9ed3ff600d59ee4106d0fb https://www.encodeproject.org/files/ENCFF528ISK/@@download/ENCFF528ISK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF564JQT bigBed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF528ISK 10176919 ENCODE Processing Pipeline f60979a69ef5c06175839603e146ce1a https://www.encodeproject.org/files/ENCFF564JQT/@@download/ENCFF564JQT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF058DJL bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 6863158 ENCODE Processing Pipeline ee81955a8585a9d1a942965e8afb2823 https://www.encodeproject.org/files/ENCFF058DJL/@@download/ENCFF058DJL.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF384KND bigWig signal p-value ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF178KOP, ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 646366964 ENCODE Processing Pipeline c31df5d0ecf27b1f75e732db4eade9d7 https://www.encodeproject.org/files/ENCFF384KND/@@download/ENCFF384KND.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF617FLM bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF178KOP, ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 6978811 ENCODE Processing Pipeline 0d12bdaa6e35e22c278b4ced9e8d450c https://www.encodeproject.org/files/ENCFF617FLM/@@download/ENCFF617FLM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF579WGO bigBed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF617FLM 12652911 ENCODE Processing Pipeline bc84f65f5d7558664d2b9a353eca3043 https://www.encodeproject.org/files/ENCFF579WGO/@@download/ENCFF579WGO.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF483WSN bed narrowPeak conservative idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF058DJL, ENCFF528ISK, ENCFF617FLM 309086 ENCODE Processing Pipeline 531d2d33a60a8d8192e30780325724f1 https://www.encodeproject.org/files/ENCFF483WSN/@@download/ENCFF483WSN.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF493SST bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF483WSN 765510 ENCODE Processing Pipeline 0647a045b6ef1c55589c3c14e3c216d7 https://www.encodeproject.org/files/ENCFF493SST/@@download/ENCFF493SST.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF484ZIS bigBed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF058DJL 12629056 ENCODE Processing Pipeline a3a4eba8aba91b3c37388a0b85a7db40 https://www.encodeproject.org/files/ENCFF484ZIS/@@download/ENCFF484ZIS.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF379MPS bed narrowPeak optimal idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF058DJL, ENCFF528ISK, ENCFF617FLM 443533 ENCODE Processing Pipeline afdb5fc3b65ee21fff5b7c97fe28142f https://www.encodeproject.org/files/ENCFF379MPS/@@download/ENCFF379MPS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF735UGM bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF379MPS 1195779 ENCODE Processing Pipeline 429419142d3b1e8ce0292adff3eb46ed https://www.encodeproject.org/files/ENCFF735UGM/@@download/ENCFF735UGM.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF132HHJ bigWig signal p-value ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF713RXC 252579039 ENCODE Processing Pipeline e2713062badfa221578ba3236b71b6d4 https://www.encodeproject.org/files/ENCFF132HHJ/@@download/ENCFF132HHJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF221GIC bigWig fold change over control ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF713RXC 154400979 ENCODE Processing Pipeline c658a0dcad6c27f312f3f49e85502e1a https://www.encodeproject.org/files/ENCFF221GIC/@@download/ENCFF221GIC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF284WFI bigWig signal p-value ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF392XRJ, ENCFF550DDF, ENCFF829HZY 490323584 ENCODE Processing Pipeline 5ec85a394d41a16d17b0fe869e721d9e https://www.encodeproject.org/files/ENCFF284WFI/@@download/ENCFF284WFI.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF938YIR bigWig signal p-value ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF550DDF, ENCFF713RXC, ENCFF829HZY 655095993 ENCODE Processing Pipeline 65b7c78617de1ace144d48abb366363c https://www.encodeproject.org/files/ENCFF938YIR/@@download/ENCFF938YIR.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF694OAZ bigWig fold change over control ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF392XRJ, ENCFF550DDF, ENCFF829HZY 451967808 ENCODE Processing Pipeline fcdf01c48d6ba61487476b59fa82954c https://www.encodeproject.org/files/ENCFF694OAZ/@@download/ENCFF694OAZ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF614LBP bigWig fold change over control ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF550DDF, ENCFF713RXC, ENCFF829HZY 595753206 ENCODE Processing Pipeline 270bceef07605f6e6a413b976cee4803 https://www.encodeproject.org/files/ENCFF614LBP/@@download/ENCFF614LBP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF805AOR bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF392XRJ, ENCFF550DDF, ENCFF829HZY 6843301 ENCODE Processing Pipeline 948ca6b287b4b9c17d5cdbe00ef0cfb1 https://www.encodeproject.org/files/ENCFF805AOR/@@download/ENCFF805AOR.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF856CDH bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF930OMM 764045 ENCODE Processing Pipeline 57cc462340c59057892d5a72ad68725b https://www.encodeproject.org/files/ENCFF856CDH/@@download/ENCFF856CDH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF899YUP bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF713RXC 4215327 ENCODE Processing Pipeline 91c2f7ceb852450b1d9a162f5175d57c https://www.encodeproject.org/files/ENCFF899YUP/@@download/ENCFF899YUP.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF134VON bigBed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF899YUP 9826507 ENCODE Processing Pipeline 99700df4ec09f598282bc75e7b8327ed https://www.encodeproject.org/files/ENCFF134VON/@@download/ENCFF134VON.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF666PCE bed narrowPeak optimal idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF805AOR, ENCFF899YUP, ENCFF941HWG 444907 ENCODE Processing Pipeline 32519d91cf9265db07609fd8a27284a6 https://www.encodeproject.org/files/ENCFF666PCE/@@download/ENCFF666PCE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF941HWG bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF550DDF, ENCFF713RXC, ENCFF829HZY 6980764 ENCODE Processing Pipeline 1ede3aef6419bc71acfe3c3819cf0121 https://www.encodeproject.org/files/ENCFF941HWG/@@download/ENCFF941HWG.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF438TOM bigBed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF805AOR 12611231 ENCODE Processing Pipeline 33af09c677c8efd16efa29d489d5157c https://www.encodeproject.org/files/ENCFF438TOM/@@download/ENCFF438TOM.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF737CYI bigBed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF941HWG 12657588 ENCODE Processing Pipeline 37b0b4a28b230e46f1130a9baae3f245 https://www.encodeproject.org/files/ENCFF737CYI/@@download/ENCFF737CYI.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF930OMM bed narrowPeak conservative idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF805AOR, ENCFF899YUP, ENCFF941HWG 308367 ENCODE Processing Pipeline 7b1312155dffd40473bd76b65e3c05df https://www.encodeproject.org/files/ENCFF930OMM/@@download/ENCFF930OMM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF872IKE bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF666PCE 1197436 ENCODE Processing Pipeline 439449205e0f50932e83960f9662620c https://www.encodeproject.org/files/ENCFF872IKE/@@download/ENCFF872IKE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000ZAD bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZAQ 381452786 Michael Snyder, Stanford 03043015aa2ff95c3b9544136d284e46 https://www.encodeproject.org/files/ENCFF000ZAD/@@download/ENCFF000ZAD.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAF bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZAR 661654647 Michael Snyder, Stanford 7334042cc054fa6705bde2c98d08b642 https://www.encodeproject.org/files/ENCFF000ZAF/@@download/ENCFF000ZAF.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAG bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOW 99416 Michael Snyder, Stanford 34a57d8a2db39312e1f74dc67f2c5173 https://www.encodeproject.org/files/ENCFF000ZAG/@@download/ENCFF000ZAG.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAH bigWig signal ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 343360728 Michael Snyder, Stanford 56d776e5b3b09f039c3db9831cbc9a2e https://www.encodeproject.org/files/ENCFF000ZAH/@@download/ENCFF000ZAH.bigWig hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000ZAQ fastq reads ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 287143575 Michael Snyder, Stanford 259e23279b9994ba20165a0bb89c7116 https://www.encodeproject.org/files/ENCFF000ZAQ/@@download/ENCFF000ZAQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZAR fastq reads ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 517004442 Michael Snyder, Stanford e36813556038df251fb56f0f482a9623 https://www.encodeproject.org/files/ENCFF000ZAR/@@download/ENCFF000ZAR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOW bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 18033 Michael Snyder, Stanford e083514337ac09f22ea264e17f22c278 https://www.encodeproject.org/files/ENCFF001VOW/@@download/ENCFF001VOW.bed.gz hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CYE bed narrowPeak optimal idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 48537 ENCODE Consortium Analysis Working Group 199b233a57914bd4ff8cd80e03ae96bc https://www.encodeproject.org/files/ENCFF002CYE/@@download/ENCFF002CYE.bed.gz hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF404RDA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYE 133145 ENCODE Consortium af6547755f81fa402b73ccff46ccb05a https://www.encodeproject.org/files/ENCFF404RDA/@@download/ENCFF404RDA.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF972AUH bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZAQ, ENCFF807MUK 235286184 ENCODE Processing Pipeline 5d5f858a0b36798f165a0fac4b6981e1 https://www.encodeproject.org/files/ENCFF972AUH/@@download/ENCFF972AUH.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF860EJH bam unfiltered alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZAQ, ENCFF807MUK 381929181 ENCODE Processing Pipeline 3ead6e18a72665d7bccb7fcafa7eccb8 https://www.encodeproject.org/files/ENCFF860EJH/@@download/ENCFF860EJH.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF663MAR bam unfiltered alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZAQ, ENCFF643CGH 382787875 ENCODE Processing Pipeline 9637ac329c6aadba9e669b169f0477a9 https://www.encodeproject.org/files/ENCFF663MAR/@@download/ENCFF663MAR.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF533MWQ bam unfiltered alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAR, ENCFF643CGH 603863344 ENCODE Processing Pipeline 3fbad3616db1165020908ddaa9bda594 https://www.encodeproject.org/files/ENCFF533MWQ/@@download/ENCFF533MWQ.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF173MEF bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZAQ, ENCFF643CGH 234952826 ENCODE Processing Pipeline b6a928e5c745bba4f39e3d5929348316 https://www.encodeproject.org/files/ENCFF173MEF/@@download/ENCFF173MEF.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF041UWI bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAR, ENCFF643CGH 299736100 ENCODE Processing Pipeline dc4f9613aa0ff67442271bd4f2abba35 https://www.encodeproject.org/files/ENCFF041UWI/@@download/ENCFF041UWI.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF298LEE bam unfiltered alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAR, ENCFF807MUK 602574907 ENCODE Processing Pipeline 098f707bfc52314a41c9033729dc9797 https://www.encodeproject.org/files/ENCFF298LEE/@@download/ENCFF298LEE.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF113JSN bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAR, ENCFF807MUK 300165456 ENCODE Processing Pipeline 7821d7dc466977211bfb0cb7b00648f2 https://www.encodeproject.org/files/ENCFF113JSN/@@download/ENCFF113JSN.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF719OWC bigWig signal p-value ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF972AUH 256594434 ENCODE Processing Pipeline 1777802ad7a5935e21975bb81259d3bd https://www.encodeproject.org/files/ENCFF719OWC/@@download/ENCFF719OWC.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF701RAL bigWig signal p-value ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113JSN, ENCFF331ARQ 250295652 ENCODE Processing Pipeline 32c2b914251c5a544a74c4987d3e7d40 https://www.encodeproject.org/files/ENCFF701RAL/@@download/ENCFF701RAL.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF646MGQ bigWig fold change over control ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF972AUH 112968642 ENCODE Processing Pipeline 4820b32fc994d8bdc8bddeed90b9144b https://www.encodeproject.org/files/ENCFF646MGQ/@@download/ENCFF646MGQ.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF600DEI bigWig fold change over control ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113JSN, ENCFF331ARQ 137570726 ENCODE Processing Pipeline 396b7073463e908acf0426e0d71c4e5f https://www.encodeproject.org/files/ENCFF600DEI/@@download/ENCFF600DEI.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF922XOB bigWig signal p-value ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113JSN, ENCFF331ARQ, ENCFF972AUH 269742317 ENCODE Processing Pipeline 6412f7c0583c9b790a1b6607e10a89e6 https://www.encodeproject.org/files/ENCFF922XOB/@@download/ENCFF922XOB.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF985QWF bigWig fold change over control ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113JSN, ENCFF331ARQ, ENCFF972AUH 227488329 ENCODE Processing Pipeline 767376e72727985653cd24c65a6b414a https://www.encodeproject.org/files/ENCFF985QWF/@@download/ENCFF985QWF.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF797EKN bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113JSN, ENCFF331ARQ 3236176 ENCODE Processing Pipeline 07b93e0a5afac38587f86032ead1a9d2 https://www.encodeproject.org/files/ENCFF797EKN/@@download/ENCFF797EKN.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF947WYS bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF972AUH 1865185 ENCODE Processing Pipeline 448a218d0b8b82117f2a236becd6d1c4 https://www.encodeproject.org/files/ENCFF947WYS/@@download/ENCFF947WYS.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF473ULH bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113JSN, ENCFF331ARQ, ENCFF972AUH 4609370 ENCODE Processing Pipeline 59b892a9b152e624fb0865052d1ab77c https://www.encodeproject.org/files/ENCFF473ULH/@@download/ENCFF473ULH.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF063HDC bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF797EKN 7500083 ENCODE Processing Pipeline 83b55eb28025e36284ce34810ea76698 https://www.encodeproject.org/files/ENCFF063HDC/@@download/ENCFF063HDC.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF825FIW bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF473ULH 10305834 ENCODE Processing Pipeline 41ebc2faa2bceb2d2f783583c1db9ee7 https://www.encodeproject.org/files/ENCFF825FIW/@@download/ENCFF825FIW.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF452VIZ bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF947WYS 3899441 ENCODE Processing Pipeline 6f428de95dc5bb2c91e1397af634991a https://www.encodeproject.org/files/ENCFF452VIZ/@@download/ENCFF452VIZ.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF964OWK bed narrowPeak conservative idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF473ULH, ENCFF797EKN, ENCFF947WYS 42073 ENCODE Processing Pipeline a16cbb7d4af4f373bfeb48e9baa3c968 https://www.encodeproject.org/files/ENCFF964OWK/@@download/ENCFF964OWK.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF648NYF bed narrowPeak optimal idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF473ULH, ENCFF797EKN, ENCFF947WYS 49746 ENCODE Processing Pipeline 2a8c734f74b99e36c8be46d2216ac62e https://www.encodeproject.org/files/ENCFF648NYF/@@download/ENCFF648NYF.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF422ZPX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF648NYF 136485 ENCODE Processing Pipeline b39eeac49b21f434e94fe1689f3b65c4 https://www.encodeproject.org/files/ENCFF422ZPX/@@download/ENCFF422ZPX.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF397VRL bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF964OWK 125604 ENCODE Processing Pipeline 01d9fa13ac77433eacb9ed4fbd846b98 https://www.encodeproject.org/files/ENCFF397VRL/@@download/ENCFF397VRL.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF772JAO bigWig signal p-value ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF041UWI, ENCFF173MEF, ENCFF482LDC 269392973 ENCODE Processing Pipeline cd4b225fe7e3b3b5503cfd7b84631110 https://www.encodeproject.org/files/ENCFF772JAO/@@download/ENCFF772JAO.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF019AZV bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423LHI 7483166 ENCODE Processing Pipeline 3142e07a6f4f4cdfaf83cafbf62ddd13 https://www.encodeproject.org/files/ENCFF019AZV/@@download/ENCFF019AZV.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF229WAI bigWig signal p-value ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF173MEF, ENCFF482LDC 239377962 ENCODE Processing Pipeline 88ec47cd35ba7301da979dc73287be7a https://www.encodeproject.org/files/ENCFF229WAI/@@download/ENCFF229WAI.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF445OFU bigWig fold change over control ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF173MEF, ENCFF482LDC 108917765 ENCODE Processing Pipeline 53a3736b81ac0c699b397ff2919e8f12 https://www.encodeproject.org/files/ENCFF445OFU/@@download/ENCFF445OFU.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF431NLF bed narrowPeak optimal idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF020PTC, ENCFF168GOT, ENCFF419RSJ, ENCFF423LHI 49074 ENCODE Processing Pipeline 348d81f4c05a13fc0c9e4e08cb1285a4 https://www.encodeproject.org/files/ENCFF431NLF/@@download/ENCFF431NLF.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF168GOT bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF173MEF, ENCFF482LDC 1870121 ENCODE Processing Pipeline f5dde80dbcf0f38c8e837cc4c6bd02ac https://www.encodeproject.org/files/ENCFF168GOT/@@download/ENCFF168GOT.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF456PYB bigWig signal p-value ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF041UWI, ENCFF482LDC 250337257 ENCODE Processing Pipeline efc78fa57aed3f7b885954786eb22ee9 https://www.encodeproject.org/files/ENCFF456PYB/@@download/ENCFF456PYB.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF239YBG bigWig fold change over control ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF041UWI, ENCFF482LDC 133500334 ENCODE Processing Pipeline d8a7f84ae8b2da39fc758e79e3764dbb https://www.encodeproject.org/files/ENCFF239YBG/@@download/ENCFF239YBG.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF097REV bigWig fold change over control ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF041UWI, ENCFF173MEF, ENCFF482LDC 227830867 ENCODE Processing Pipeline cd26569eef63ff239e96a16ae4bbbce4 https://www.encodeproject.org/files/ENCFF097REV/@@download/ENCFF097REV.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF423LHI bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF041UWI, ENCFF482LDC 3227022 ENCODE Processing Pipeline 428c94be5cb50ab04d571cbb511ad558 https://www.encodeproject.org/files/ENCFF423LHI/@@download/ENCFF423LHI.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF020PTC bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF041UWI, ENCFF173MEF, ENCFF482LDC 4603925 ENCODE Processing Pipeline 54235281c105423ac8391229e8a45cd6 https://www.encodeproject.org/files/ENCFF020PTC/@@download/ENCFF020PTC.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF205QNW bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF168GOT 3902705 ENCODE Processing Pipeline 96cade197373e30a7e75be74311fa404 https://www.encodeproject.org/files/ENCFF205QNW/@@download/ENCFF205QNW.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF272BTH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF122XOC 126106 ENCODE Processing Pipeline 826b1cd07f3bb7b0f56d94944f310cdf https://www.encodeproject.org/files/ENCFF272BTH/@@download/ENCFF272BTH.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF343CHV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF431NLF 135323 ENCODE Processing Pipeline f4dde23fa6dc7a47e3cfa08aa23a0c66 https://www.encodeproject.org/files/ENCFF343CHV/@@download/ENCFF343CHV.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF008GHD bigBed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF020PTC 10306060 ENCODE Processing Pipeline ba9d25763bd48b2c7ff3521efe3b31e6 https://www.encodeproject.org/files/ENCFF008GHD/@@download/ENCFF008GHD.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF122XOC bed narrowPeak conservative idr thresholded peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF020PTC, ENCFF168GOT, ENCFF419RSJ, ENCFF423LHI 42453 ENCODE Processing Pipeline 1732613abe815d77f4c8285d0e43099f https://www.encodeproject.org/files/ENCFF122XOC/@@download/ENCFF122XOC.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000REK bam alignments ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000REX 949642149 Richard Myers, HAIB 8366f8ddcdbc9c438da05cfb247c3a5b https://www.encodeproject.org/files/ENCFF000REK/@@download/ENCFF000REK.bam hg19 released biological replicates with identical biosample ENCFF000REL bigBed broadPeak peaks ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UQN 127594 Richard Myers, HAIB 33f398536dd4f1f24526fc5d75b2c22c https://www.encodeproject.org/files/ENCFF000REL/@@download/ENCFF000REL.bigBed hg19 released biological replicates with identical biosample ENCFF000REM bigBed broadPeak peaks ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UQO 374054 Richard Myers, HAIB b8f0297525dc1addb0caa6586857e62c https://www.encodeproject.org/files/ENCFF000REM/@@download/ENCFF000REM.bigBed hg19 released biological replicates with identical biosample ENCFF000REN bam alignments ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REZ 1669372767 Richard Myers, HAIB 754a081816d92e619fc4999a4c44e833 https://www.encodeproject.org/files/ENCFF000REN/@@download/ENCFF000REN.bam hg19 released biological replicates with identical biosample ENCFF000REO bigWig raw signal ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 104385241 Richard Myers, HAIB fd338590956882a6bf27c6e6525b788e https://www.encodeproject.org/files/ENCFF000REO/@@download/ENCFF000REO.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000REQ bigWig raw signal ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 159908023 Richard Myers, HAIB 7c044dd1d75887b8458fc9f49d5293bc https://www.encodeproject.org/files/ENCFF000REQ/@@download/ENCFF000REQ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000REX fastq reads ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 992003622 Richard Myers, HAIB b2b284664d87067c681b13b9f594f489 https://www.encodeproject.org/files/ENCFF000REX/@@download/ENCFF000REX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF000REZ fastq reads ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1680896873 Richard Myers, HAIB 0cebefa3f775145833f0ba6cd6e42673 https://www.encodeproject.org/files/ENCFF000REZ/@@download/ENCFF000REZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UQN bed broadPeak peaks ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 1 58289 Richard Myers, HAIB a599b90cf2310a933a4cb92093aee9c5 https://www.encodeproject.org/files/ENCFF001UQN/@@download/ENCFF001UQN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UQO bed broadPeak peaks ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 1 184466 Richard Myers, HAIB 86dd24feba07e989fbb3cf5d127764d2 https://www.encodeproject.org/files/ENCFF001UQO/@@download/ENCFF001UQO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000WUK bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHA 608564 Michael Snyder, Stanford 750fd6e5924e24d7bc2a398a0008c199 https://www.encodeproject.org/files/ENCFF000WUK/@@download/ENCFF000WUK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUL bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WUR 486622381 Michael Snyder, Stanford c988447121340f91b81b238029c3a50f https://www.encodeproject.org/files/ENCFF000WUL/@@download/ENCFF000WUL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUM bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WUS 568634916 Michael Snyder, Stanford 5ecd464587cf3fe614e71f8c0764cc3f https://www.encodeproject.org/files/ENCFF000WUM/@@download/ENCFF000WUM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUN bigWig signal ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 396775549 Michael Snyder, Stanford e97c277accd08832c79011480e69d29d https://www.encodeproject.org/files/ENCFF000WUN/@@download/ENCFF000WUN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WUR fastq reads ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1025690947 Michael Snyder, Stanford caeb2849beefb66336ad2c47a9a0f73b https://www.encodeproject.org/files/ENCFF000WUR/@@download/ENCFF000WUR.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUS fastq reads ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1205446436 Michael Snyder, Stanford 0b9db92a348335c3c102aa699610c538 https://www.encodeproject.org/files/ENCFF000WUS/@@download/ENCFF000WUS.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VHA bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 255352 Michael Snyder, Stanford 630dc5164e42f965085be8c0f3532304 https://www.encodeproject.org/files/ENCFF001VHA/@@download/ENCFF001VHA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CRC bed narrowPeak optimal idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 113020 ENCODE Consortium Analysis Working Group ac25b5be53b26c71dbb7393b82bc891f https://www.encodeproject.org/files/ENCFF002CRC/@@download/ENCFF002CRC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF635WXQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRC 336589 ENCODE Consortium 2608af8f688d1b65e49199f3f32c37f1 https://www.encodeproject.org/files/ENCFF635WXQ/@@download/ENCFF635WXQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF989VTF bam unfiltered alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUR, ENCFF807MUK 1209509784 ENCODE Processing Pipeline cd6495602e9d39ba3576c1fd905c1330 https://www.encodeproject.org/files/ENCFF989VTF/@@download/ENCFF989VTF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF563ODJ bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUR, ENCFF807MUK 728147801 ENCODE Processing Pipeline 6538c9d2d5f232fc85c269dca546346e https://www.encodeproject.org/files/ENCFF563ODJ/@@download/ENCFF563ODJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF092KAW bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUS, ENCFF807MUK 897966734 ENCODE Processing Pipeline 01d090012136574a07c0b9449c48cca7 https://www.encodeproject.org/files/ENCFF092KAW/@@download/ENCFF092KAW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF794YDS bam unfiltered alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUS, ENCFF807MUK 1447845706 ENCODE Processing Pipeline a379df0a6a8af0948afb57aa21a69e17 https://www.encodeproject.org/files/ENCFF794YDS/@@download/ENCFF794YDS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF649EVF bam unfiltered alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUS, ENCFF643CGH 1454542859 ENCODE Processing Pipeline 18b30cabe0e02a12db898e9b344c0a8e https://www.encodeproject.org/files/ENCFF649EVF/@@download/ENCFF649EVF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF060DJH bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUR, ENCFF643CGH 727770575 ENCODE Processing Pipeline 537520010fcfbe6325002cd0547e9728 https://www.encodeproject.org/files/ENCFF060DJH/@@download/ENCFF060DJH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF100HXA bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUS, ENCFF643CGH 897506757 ENCODE Processing Pipeline 4ab39e48e27735e9497de459d8f3740a https://www.encodeproject.org/files/ENCFF100HXA/@@download/ENCFF100HXA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF744FCP bam unfiltered alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUR, ENCFF643CGH 1214656872 ENCODE Processing Pipeline fd24af80bfd3a226f970c0c10e968984 https://www.encodeproject.org/files/ENCFF744FCP/@@download/ENCFF744FCP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF879PRH bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF547PLM 8668874 ENCODE Processing Pipeline acc85d2b277da04e762e88a50998a613 https://www.encodeproject.org/files/ENCFF879PRH/@@download/ENCFF879PRH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF380EHF bed narrowPeak conservative idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF392HAM, ENCFF547PLM, ENCFF987TTM 75649 ENCODE Processing Pipeline 6d7171f183d9cfb07b0d575c8a7498c2 https://www.encodeproject.org/files/ENCFF380EHF/@@download/ENCFF380EHF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF584RVM bigWig signal p-value ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092KAW, ENCFF563ODJ, ENCFF599MVB 766735017 ENCODE Processing Pipeline 8c3db3bbc34bae7ada33e5ce2b2eadeb https://www.encodeproject.org/files/ENCFF584RVM/@@download/ENCFF584RVM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF244IPX bigWig fold change over control ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF092KAW, ENCFF599MVB 500523571 ENCODE Processing Pipeline 6c2a7946a141794a85a9c1276efb2661 https://www.encodeproject.org/files/ENCFF244IPX/@@download/ENCFF244IPX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF644ITQ bigWig fold change over control ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF563ODJ, ENCFF599MVB 433666827 ENCODE Processing Pipeline ec58f393f4d576fb2c06f618dbcec972 https://www.encodeproject.org/files/ENCFF644ITQ/@@download/ENCFF644ITQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF875OVP bigWig fold change over control ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092KAW, ENCFF563ODJ, ENCFF599MVB 794993006 ENCODE Processing Pipeline 498f713ba268436bbf0531a642d5840d https://www.encodeproject.org/files/ENCFF875OVP/@@download/ENCFF875OVP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF987TTM bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092KAW, ENCFF563ODJ, ENCFF599MVB 4731068 ENCODE Processing Pipeline c5944f4e5a486548e7ce57ac352bdb2f https://www.encodeproject.org/files/ENCFF987TTM/@@download/ENCFF987TTM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF218XCN bigWig signal p-value ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF563ODJ, ENCFF599MVB 567211603 ENCODE Processing Pipeline 6ee54d7170c00f000fc54208ca9b6554 https://www.encodeproject.org/files/ENCFF218XCN/@@download/ENCFF218XCN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF797IEV bigWig signal p-value ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF092KAW, ENCFF599MVB 585516145 ENCODE Processing Pipeline ec9089b78572d33f238fbc8d4840c024 https://www.encodeproject.org/files/ENCFF797IEV/@@download/ENCFF797IEV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF024FXN bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF392HAM 11124245 ENCODE Processing Pipeline 76e6d6cd400ffb54247da38109c73a2c https://www.encodeproject.org/files/ENCFF024FXN/@@download/ENCFF024FXN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361OIH bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF987TTM 11501063 ENCODE Processing Pipeline a745ea03a9806486bf893d4b07a1c794 https://www.encodeproject.org/files/ENCFF361OIH/@@download/ENCFF361OIH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF588XVG bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF380EHF 199475 ENCODE Processing Pipeline 1b273639e730d1c3a779068f9465e56a https://www.encodeproject.org/files/ENCFF588XVG/@@download/ENCFF588XVG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF547PLM bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF563ODJ, ENCFF599MVB 3842919 ENCODE Processing Pipeline 8a6974cded2ec2a82d697875422697da https://www.encodeproject.org/files/ENCFF547PLM/@@download/ENCFF547PLM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF508IBP bed narrowPeak optimal idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF392HAM, ENCFF547PLM, ENCFF987TTM 87681 ENCODE Processing Pipeline 665542539f7b759c7b820632d8d8d8c3 https://www.encodeproject.org/files/ENCFF508IBP/@@download/ENCFF508IBP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392HAM bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF092KAW, ENCFF599MVB 4281939 ENCODE Processing Pipeline 4b4ad69bceb5dea6af4133c068fdecb3 https://www.encodeproject.org/files/ENCFF392HAM/@@download/ENCFF392HAM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357NTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF508IBP 216227 ENCODE Processing Pipeline e6560cb96b83a45179ff6fc825580088 https://www.encodeproject.org/files/ENCFF357NTQ/@@download/ENCFF357NTQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF515ERL bigWig fold change over control ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF060DJH, ENCFF100HXA, ENCFF513EWK 795100987 ENCODE Processing Pipeline b4ab8a9744d01cd8b6aa9311d12350b7 https://www.encodeproject.org/files/ENCFF515ERL/@@download/ENCFF515ERL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF723BQB bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF060DJH, ENCFF513EWK 3958066 ENCODE Processing Pipeline 6146af08bcf3eeec77c8846fa94dc5ca https://www.encodeproject.org/files/ENCFF723BQB/@@download/ENCFF723BQB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF652PKH bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF100HXA, ENCFF513EWK 4259425 ENCODE Processing Pipeline c4e1e3675051048b5ef83fe31201900a https://www.encodeproject.org/files/ENCFF652PKH/@@download/ENCFF652PKH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF449KGF bigWig fold change over control ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF060DJH, ENCFF513EWK 431084747 ENCODE Processing Pipeline 67d6ff0bf2727f96b883ed26fd81b613 https://www.encodeproject.org/files/ENCFF449KGF/@@download/ENCFF449KGF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF200CCE bed narrowPeak conservative idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF224ZJY, ENCFF419RSJ, ENCFF652PKH, ENCFF723BQB 75781 ENCODE Processing Pipeline 227dd9ee2e5f02a99a2ddb958f2a07cc https://www.encodeproject.org/files/ENCFF200CCE/@@download/ENCFF200CCE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF088MRX bigWig signal p-value ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF060DJH, ENCFF513EWK 608707415 ENCODE Processing Pipeline e4cf42803c9e6864eda6655ff002a9b1 https://www.encodeproject.org/files/ENCFF088MRX/@@download/ENCFF088MRX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952UTI bigWig signal p-value ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF060DJH, ENCFF100HXA, ENCFF513EWK 766208553 ENCODE Processing Pipeline 8e6822293676498aad4645441d1a172b https://www.encodeproject.org/files/ENCFF952UTI/@@download/ENCFF952UTI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF872BOY bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF224ZJY 11509904 ENCODE Processing Pipeline 06783cb04cb3355208e6583d4b789677 https://www.encodeproject.org/files/ENCFF872BOY/@@download/ENCFF872BOY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF769IOY bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF200CCE 200932 ENCODE Processing Pipeline 65c2e0b0abc45c31f28be1f547f8cad1 https://www.encodeproject.org/files/ENCFF769IOY/@@download/ENCFF769IOY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF407IVS bed narrowPeak optimal idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF224ZJY, ENCFF419RSJ, ENCFF652PKH, ENCFF723BQB 87390 ENCODE Processing Pipeline d947727aba48694e2b48c19dae2912f5 https://www.encodeproject.org/files/ENCFF407IVS/@@download/ENCFF407IVS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF333ICF bigWig signal p-value ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF100HXA, ENCFF513EWK 575105721 ENCODE Processing Pipeline 439accefbf9852e4c0fb67cfca336699 https://www.encodeproject.org/files/ENCFF333ICF/@@download/ENCFF333ICF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF152BEY bigWig fold change over control ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF100HXA, ENCFF513EWK 504882322 ENCODE Processing Pipeline dedc4cf5896ec1859bd023f7600b0afb https://www.encodeproject.org/files/ENCFF152BEY/@@download/ENCFF152BEY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF224ZJY bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF060DJH, ENCFF100HXA, ENCFF513EWK 4727606 ENCODE Processing Pipeline 3b0c23fe6fe45e001c50c4c843ba2b39 https://www.encodeproject.org/files/ENCFF224ZJY/@@download/ENCFF224ZJY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF617VSC bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF723BQB 10730170 ENCODE Processing Pipeline 06b2eeb3c147e0849a74dc0b6abc52fc https://www.encodeproject.org/files/ENCFF617VSC/@@download/ENCFF617VSC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416DPN bigBed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF652PKH 11099061 ENCODE Processing Pipeline ba0af66d40a9fbdf6b022d0126dcdd8c https://www.encodeproject.org/files/ENCFF416DPN/@@download/ENCFF416DPN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF234INN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF407IVS 217075 ENCODE Processing Pipeline c4ae3500d57d6f4db2aadb924588b44e https://www.encodeproject.org/files/ENCFF234INN/@@download/ENCFF234INN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OYF bam alignments ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYS 1356402644 Richard Myers, HAIB 9145fd38750713b015e3a19728f8cdb8 https://www.encodeproject.org/files/ENCFF000OYF/@@download/ENCFF000OYF.bam hg19 released biological replicates with identical biosample ENCFF000OYH bigBed broadPeak peaks ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDO 198609 Richard Myers, HAIB 803bfe072cdc4133727ea58b4f03aeb2 https://www.encodeproject.org/files/ENCFF000OYH/@@download/ENCFF000OYH.bigBed hg19 released biological replicates with identical biosample ENCFF000OYJ bigBed broadPeak peaks ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDP 279539 Richard Myers, HAIB 29a24c67a92972ce0326a7c9ea117d01 https://www.encodeproject.org/files/ENCFF000OYJ/@@download/ENCFF000OYJ.bigBed hg19 released biological replicates with identical biosample ENCFF000OYK bam alignments ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OYU 1439543084 Richard Myers, HAIB 734cadfd39b57f04581f429a83057e59 https://www.encodeproject.org/files/ENCFF000OYK/@@download/ENCFF000OYK.bam hg19 released biological replicates with identical biosample ENCFF000OYL bigWig raw signal ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 160644881 Richard Myers, HAIB 15b0e103eec2b2c81403656a53bf2cda https://www.encodeproject.org/files/ENCFF000OYL/@@download/ENCFF000OYL.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OYM bigWig raw signal ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 241820500 Richard Myers, HAIB 2945f318fc987b34f4779b338912f6e3 https://www.encodeproject.org/files/ENCFF000OYM/@@download/ENCFF000OYM.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OYS fastq reads ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1396644918 Richard Myers, HAIB 2f417c714a1d183e107ab1df1b19855e https://www.encodeproject.org/files/ENCFF000OYS/@@download/ENCFF000OYS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000OYU fastq reads ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1466706035 Richard Myers, HAIB c3dafb702443868d28703b924d238426 https://www.encodeproject.org/files/ENCFF000OYU/@@download/ENCFF000OYU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UDO bed broadPeak peaks ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 104462 Richard Myers, HAIB bc482c7f15e38ebcae2592d9211e1c30 https://www.encodeproject.org/files/ENCFF001UDO/@@download/ENCFF001UDO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UDP bed broadPeak peaks ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 123245 Richard Myers, HAIB 5c531a9eae920aa3069f6eeb375bfa3d https://www.encodeproject.org/files/ENCFF001UDP/@@download/ENCFF001UDP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QOC bam alignments ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QOS 2253044486 Richard Myers, HAIB aa83e7c504b1cb6ee13ce05ca0d337cc https://www.encodeproject.org/files/ENCFF000QOC/@@download/ENCFF000QOC.bam hg19 released biological replicates with identical biosample ENCFF000QOE bigBed broadPeak peaks ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UND 917070 Richard Myers, HAIB 818c58e0e35fd546d5ef3c2849080e02 https://www.encodeproject.org/files/ENCFF000QOE/@@download/ENCFF000QOE.bigBed hg19 released biological replicates with identical biosample ENCFF000QOF bigBed broadPeak peaks ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UNE 362096 Richard Myers, HAIB 01421f2931535e33988fc9854af8f798 https://www.encodeproject.org/files/ENCFF000QOF/@@download/ENCFF000QOF.bigBed hg19 released biological replicates with identical biosample ENCFF000QOG bigWig raw signal ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 286783880 Richard Myers, HAIB 5886bf22e01224024957d569705343a1 https://www.encodeproject.org/files/ENCFF000QOG/@@download/ENCFF000QOG.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QOH bam alignments ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QON 598903917 Richard Myers, HAIB 450d00cf09edb2a974602b5283d29d6f https://www.encodeproject.org/files/ENCFF000QOH/@@download/ENCFF000QOH.bam hg19 released biological replicates with identical biosample ENCFF000QOI bigWig raw signal ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 79691320 Richard Myers, HAIB 0c2ece91783648f9779c93e2b42bdc1c https://www.encodeproject.org/files/ENCFF000QOI/@@download/ENCFF000QOI.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QON fastq reads ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 601507185 Richard Myers, HAIB e0b47625b54c3748972782f23ea5ee27 https://www.encodeproject.org/files/ENCFF000QON/@@download/ENCFF000QON.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQK/ released biological replicates with identical biosample ENCFF000QOS fastq reads ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2383057151 Richard Myers, HAIB 3dcfd515afe9451e35e1dd1d22d58ae0 https://www.encodeproject.org/files/ENCFF000QOS/@@download/ENCFF000QOS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UND bed broadPeak peaks ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 482308 Richard Myers, HAIB 08339bb32e9e8d1a036f4e3ea112a073 https://www.encodeproject.org/files/ENCFF001UND/@@download/ENCFF001UND.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UNE bed broadPeak peaks ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 200191 Richard Myers, HAIB 0cad11a482f2c4a803781fd0db7dfcba https://www.encodeproject.org/files/ENCFF001UNE/@@download/ENCFF001UNE.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000CQQ bigBed broadPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001TCJ 2303394 Bradley Bernstein, Broad 6218a3bcc820e47b437c0d931d230e04 https://www.encodeproject.org/files/ENCFF000CQQ/@@download/ENCFF000CQQ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF000CQR bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000CRA 1468375586 Bradley Bernstein, Broad 31c42686f52e1077960e713bbe7ffc22 https://www.encodeproject.org/files/ENCFF000CQR/@@download/ENCFF000CQR.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF000CQS bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000CRB 1570551079 Bradley Bernstein, Broad daaf08134f02796d0b16ec4a0e631d79 https://www.encodeproject.org/files/ENCFF000CQS/@@download/ENCFF000CQS.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF000CQT bigWig signal ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 535270107 Bradley Bernstein, Broad 540b5283b37f6fa13d74ac98fb1263f8 https://www.encodeproject.org/files/ENCFF000CQT/@@download/ENCFF000CQT.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing derived_from missing control alignments ENCFF000CRA fastq reads ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1505880213 Bradley Bernstein, Broad df90e1f7502d7c889e3ed60f98ab5f33 https://www.encodeproject.org/files/ENCFF000CRA/@@download/ENCFF000CRA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000CQO/ released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF000CRB fastq reads ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1607157217 Bradley Bernstein, Broad 303fb65ee97832aebdb4cf2a2f90534a https://www.encodeproject.org/files/ENCFF000CRB/@@download/ENCFF000CRB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000CQP/ released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF001TCJ bed broadPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1228868 Bradley Bernstein, Broad 7ee7c797c2b4b074bd9bb830382f523b https://www.encodeproject.org/files/ENCFF001TCJ/@@download/ENCFF001TCJ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing derived_from missing control alignments ENCFF002CFE bed narrowPeak optimal idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 171761 ENCODE Consortium Analysis Working Group c280543eeeb49fdd89d338ca4605ba20 https://www.encodeproject.org/files/ENCFF002CFE/@@download/ENCFF002CFE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing derived_from missing control alignments ENCFF761DHY bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CFE 448832 ENCODE Consortium 1a5f57877df93602418efc4827b1bd91 https://www.encodeproject.org/files/ENCFF761DHY/@@download/ENCFF761DHY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF416DEJ bam unfiltered alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CRA, ENCFF643CGH 1911832963 ENCODE Processing Pipeline 80ac066c17bd080e11d0b4e3a6e04a91 https://www.encodeproject.org/files/ENCFF416DEJ/@@download/ENCFF416DEJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF277UKB bam unfiltered alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CRB, ENCFF643CGH 2062356994 ENCODE Processing Pipeline a3126fd8a329442740a4b6c001600da4 https://www.encodeproject.org/files/ENCFF277UKB/@@download/ENCFF277UKB.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF171PUL bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CRA, ENCFF643CGH 1134001695 ENCODE Processing Pipeline e9020c69f19aea019d57edf49563e38a https://www.encodeproject.org/files/ENCFF171PUL/@@download/ENCFF171PUL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF072QPI bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CRB, ENCFF643CGH 1308923315 ENCODE Processing Pipeline b0ce8d287c933261c8baf6c8e24d93bb https://www.encodeproject.org/files/ENCFF072QPI/@@download/ENCFF072QPI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF940TAB bam unfiltered alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CRA, ENCFF807MUK 1901230077 ENCODE Processing Pipeline 78b18f6f7589288433cdf03bd71068a0 https://www.encodeproject.org/files/ENCFF940TAB/@@download/ENCFF940TAB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF517CBX bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CRA, ENCFF807MUK 1134450104 ENCODE Processing Pipeline e7ead566562ebc4ceadb0d864e732544 https://www.encodeproject.org/files/ENCFF517CBX/@@download/ENCFF517CBX.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF640OQZ bam unfiltered alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CRB, ENCFF807MUK 2051478556 ENCODE Processing Pipeline cc2415da8f65aca9646ca8e8516a5c0f https://www.encodeproject.org/files/ENCFF640OQZ/@@download/ENCFF640OQZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF874IUN bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CRB, ENCFF807MUK 1309700441 ENCODE Processing Pipeline 10b3353f93483afe951bf634da85068f https://www.encodeproject.org/files/ENCFF874IUN/@@download/ENCFF874IUN.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF818MZF bigWig signal p-value ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF171PUL 232637061 ENCODE Processing Pipeline c8d1829911d5fc098ccf8d0dbbfb1035 https://www.encodeproject.org/files/ENCFF818MZF/@@download/ENCFF818MZF.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF858KNY bigWig signal p-value ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF072QPI 235864528 ENCODE Processing Pipeline 1471067f04e974280988ac7fc7e63971 https://www.encodeproject.org/files/ENCFF858KNY/@@download/ENCFF858KNY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF747ZMC bigWig signal p-value ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF072QPI, ENCFF171PUL 235190378 ENCODE Processing Pipeline 4344ada6a935150cbee57949090c33a4 https://www.encodeproject.org/files/ENCFF747ZMC/@@download/ENCFF747ZMC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF098UKS bigWig fold change over control ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF171PUL 328952936 ENCODE Processing Pipeline b323388d9993a956cd41c808d4e96c86 https://www.encodeproject.org/files/ENCFF098UKS/@@download/ENCFF098UKS.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF140YQD bigWig fold change over control ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF072QPI 390230628 ENCODE Processing Pipeline d933e2d1e66f799dac1e29c257803677 https://www.encodeproject.org/files/ENCFF140YQD/@@download/ENCFF140YQD.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF324EOP bigWig fold change over control ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF072QPI, ENCFF171PUL 645215277 ENCODE Processing Pipeline 3980f5abd1a6b88262cffa8692c7d2de https://www.encodeproject.org/files/ENCFF324EOP/@@download/ENCFF324EOP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF420IZI bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF171PUL 5167036 ENCODE Processing Pipeline 3d3d64f22ae77f51e75d7f3bde337eaf https://www.encodeproject.org/files/ENCFF420IZI/@@download/ENCFF420IZI.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF667VFK bigBed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF420IZI 12834638 ENCODE Processing Pipeline a4e69cccf24445c48b5eef31f5e6c6e0 https://www.encodeproject.org/files/ENCFF667VFK/@@download/ENCFF667VFK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF080KUG bigBed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF905IQS 12867758 ENCODE Processing Pipeline 4a45484afdc90c394015edddad63c3c0 https://www.encodeproject.org/files/ENCFF080KUG/@@download/ENCFF080KUG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF814UTJ bigBed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF565SYH 12631954 ENCODE Processing Pipeline d4c3405c84c884aee0fab81efeb09361 https://www.encodeproject.org/files/ENCFF814UTJ/@@download/ENCFF814UTJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF767SOM bed narrowPeak conservative idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF420IZI, ENCFF565SYH, ENCFF905IQS 225230 ENCODE Processing Pipeline 46207c650bd355e3054124baf456840d https://www.encodeproject.org/files/ENCFF767SOM/@@download/ENCFF767SOM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF948BIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF767SOM 560144 ENCODE Processing Pipeline 87e841c305778729194ce4fd06c7eaee https://www.encodeproject.org/files/ENCFF948BIJ/@@download/ENCFF948BIJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF279MNV bed narrowPeak optimal idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF420IZI, ENCFF565SYH, ENCFF905IQS 244358 ENCODE Processing Pipeline 904092bb16cdb31e52d6d49c5f484e24 https://www.encodeproject.org/files/ENCFF279MNV/@@download/ENCFF279MNV.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF860JUD bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF279MNV 613159 ENCODE Processing Pipeline 224c83ac5206e2975e067c91a196a7be https://www.encodeproject.org/files/ENCFF860JUD/@@download/ENCFF860JUD.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF739DWT bigWig fold change over control ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX 330143648 ENCODE Processing Pipeline b347881efe478619c4343c63243cf5dc https://www.encodeproject.org/files/ENCFF739DWT/@@download/ENCFF739DWT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF249LZB bigWig fold change over control ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF874IUN 389302350 ENCODE Processing Pipeline c93c061d9ef448b81605bb53a53f7ad7 https://www.encodeproject.org/files/ENCFF249LZB/@@download/ENCFF249LZB.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF012TXO bigBed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF379HMO 12766398 ENCODE Processing Pipeline 8996f30391e94910b3cb767c62058611 https://www.encodeproject.org/files/ENCFF012TXO/@@download/ENCFF012TXO.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF008EYC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF772XQF 610310 ENCODE Processing Pipeline a19a6cec5e15cb923039d8fd429d34b7 https://www.encodeproject.org/files/ENCFF008EYC/@@download/ENCFF008EYC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF633UXL bigWig signal p-value ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF874IUN 241283792 ENCODE Processing Pipeline ade2215671bb58c62ed4e5b7d618035a https://www.encodeproject.org/files/ENCFF633UXL/@@download/ENCFF633UXL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF692EWZ bigWig signal p-value ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX, ENCFF874IUN 233588466 ENCODE Processing Pipeline abd91aa66dbc3404b25b33c95535d6ce https://www.encodeproject.org/files/ENCFF692EWZ/@@download/ENCFF692EWZ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF971LGV bigBed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF306KIF 12870925 ENCODE Processing Pipeline 2ea87276c411fe095a5b0e9ab759fe17 https://www.encodeproject.org/files/ENCFF971LGV/@@download/ENCFF971LGV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF900HAG bigBed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF013CEU 12639506 ENCODE Processing Pipeline 0d541964debd40702e6322bea8cbb1aa https://www.encodeproject.org/files/ENCFF900HAG/@@download/ENCFF900HAG.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF229MPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF017MMZ 565431 ENCODE Processing Pipeline 13ae2175ddafc4f9ac775cd347fff8f4 https://www.encodeproject.org/files/ENCFF229MPV/@@download/ENCFF229MPV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF306KIF bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF874IUN 5125642 ENCODE Processing Pipeline 30b012c668d7bc406b0392591d3a148f https://www.encodeproject.org/files/ENCFF306KIF/@@download/ENCFF306KIF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF772XQF bed narrowPeak optimal idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF013CEU, ENCFF306KIF, ENCFF379HMO 243525 ENCODE Processing Pipeline e318abb26c13b0c4841f1a0da0747386 https://www.encodeproject.org/files/ENCFF772XQF/@@download/ENCFF772XQF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF791UKN bigWig fold change over control ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX, ENCFF874IUN 639049335 ENCODE Processing Pipeline 5b81e72f380d9ed4b76374e7f846e66c https://www.encodeproject.org/files/ENCFF791UKN/@@download/ENCFF791UKN.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF479ROD bigWig signal p-value ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX 232739572 ENCODE Processing Pipeline 5a1696c45170e06643a67ab24cc3b65b https://www.encodeproject.org/files/ENCFF479ROD/@@download/ENCFF479ROD.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF379HMO bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX 5060726 ENCODE Processing Pipeline a7a9bbf95498a766108e4e19e4588e0f https://www.encodeproject.org/files/ENCFF379HMO/@@download/ENCFF379HMO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF013CEU bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX, ENCFF874IUN 6362423 ENCODE Processing Pipeline 217a3cb1e6f40af5eaf7b7e1fefac185 https://www.encodeproject.org/files/ENCFF013CEU/@@download/ENCFF013CEU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF017MMZ bed narrowPeak conservative idr thresholded peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF013CEU, ENCFF306KIF, ENCFF379HMO 228328 ENCODE Processing Pipeline 43b4de4582abf0796b62a553d365ccc0 https://www.encodeproject.org/files/ENCFF017MMZ/@@download/ENCFF017MMZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF565SYH bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF072QPI, ENCFF171PUL 6356638 ENCODE Processing Pipeline 80335033d2a4c34d4068a920084d44d8 https://www.encodeproject.org/files/ENCFF565SYH/@@download/ENCFF565SYH.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF905IQS bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF072QPI 5121101 ENCODE Processing Pipeline ce3ba7e07c886ae9a599e2c5f97d94aa https://www.encodeproject.org/files/ENCFF905IQS/@@download/ENCFF905IQS.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF000VXN bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF000VXQ 545266770 Michael Snyder, Stanford fb021ee56dc47b0f6b6ec52e4ae91ab4 https://www.encodeproject.org/files/ENCFF000VXN/@@download/ENCFF000VXN.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000VXO bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF000VXS 578116318 Michael Snyder, Stanford 29903f63dc81d53cf9340ffecbece726 https://www.encodeproject.org/files/ENCFF000VXO/@@download/ENCFF000VXO.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000VXP bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001VEN 171001 Michael Snyder, Stanford a0cec2e68229344921e2c64359305eb3 https://www.encodeproject.org/files/ENCFF000VXP/@@download/ENCFF000VXP.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000VXQ fastq reads ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1083308094 Michael Snyder, Stanford d1233d875c6ad25fe3fbb11b0ca87726 https://www.encodeproject.org/files/ENCFF000VXQ/@@download/ENCFF000VXQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000VXS fastq reads ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 997675357 Michael Snyder, Stanford a45e9583466938654111a9c8cc9b5f0c https://www.encodeproject.org/files/ENCFF000VXS/@@download/ENCFF000VXS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000VXU bigWig signal ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF000VXN, ENCFF000VXO 634640473 Michael Snyder, Stanford 58f61f452aff61fcaed48749bed878a0 https://www.encodeproject.org/files/ENCFF000VXU/@@download/ENCFF000VXU.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF001VEN bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF000VXN, ENCFF000VXO 68569 Michael Snyder, Stanford f77d9e4af41c62fa20014e547bd3a00a https://www.encodeproject.org/files/ENCFF001VEN/@@download/ENCFF001VEN.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF469MLY bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF807MUK 1143186853 ENCODE Processing Pipeline 4652b1f1466963cf6fc29d7a3302d09f https://www.encodeproject.org/files/ENCFF469MLY/@@download/ENCFF469MLY.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF051OWS bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF807MUK 814061336 ENCODE Processing Pipeline f1b9ee1c53d67ee8b252bbf8743f3cc7 https://www.encodeproject.org/files/ENCFF051OWS/@@download/ENCFF051OWS.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF271GYL bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF807MUK 1234394775 ENCODE Processing Pipeline 968cdb3f1d105c8f6b88552983b3c77f https://www.encodeproject.org/files/ENCFF271GYL/@@download/ENCFF271GYL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF950RDW bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF807MUK 848095635 ENCODE Processing Pipeline 04debf7c96dde160ae5529ef3ae6a2bc https://www.encodeproject.org/files/ENCFF950RDW/@@download/ENCFF950RDW.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF832UGW bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 176126593 ENCODE Processing Pipeline c906ff4d1cc5a34d42c9a7f7113bf849 https://www.encodeproject.org/files/ENCFF832UGW/@@download/ENCFF832UGW.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF600DHH bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF051OWS, ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 549627639 ENCODE Processing Pipeline e52d31a92b69f96a7ec17f381c15d0f8 https://www.encodeproject.org/files/ENCFF600DHH/@@download/ENCFF600DHH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF122PLB bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 3763406 ENCODE Processing Pipeline 746f3e5bb9e3b409bd26d24ef85bf3fd https://www.encodeproject.org/files/ENCFF122PLB/@@download/ENCFF122PLB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF798UYG bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF226PAC 11267306 ENCODE Processing Pipeline 894c0b16ea5034770ff460e77137436d https://www.encodeproject.org/files/ENCFF798UYG/@@download/ENCFF798UYG.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF801VTB bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF051OWS, ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 155214980 ENCODE Processing Pipeline d0009edd8ec4b7825b6dfda08bc19d68 https://www.encodeproject.org/files/ENCFF801VTB/@@download/ENCFF801VTB.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF875OHY bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 262620607 ENCODE Processing Pipeline d3c6aeb88334f0f89732a2f9e60d4f6a https://www.encodeproject.org/files/ENCFF875OHY/@@download/ENCFF875OHY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF226PAC bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF051OWS, ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 4630641 ENCODE Processing Pipeline 07d0ff0b44c9d0d54475f76f99690bee https://www.encodeproject.org/files/ENCFF226PAC/@@download/ENCFF226PAC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF547YFC bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 72983539 ENCODE Processing Pipeline c924e1b049ec5fce4c6cc8f7481c9756 https://www.encodeproject.org/files/ENCFF547YFC/@@download/ENCFF547YFC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF885GJK bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF156VOX 10397058 ENCODE Processing Pipeline 9eb5d49ffc9b4765308fa27931f10e7d https://www.encodeproject.org/files/ENCFF885GJK/@@download/ENCFF885GJK.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF615MLT bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF122PLB 10192512 ENCODE Processing Pipeline 6661573303f546189e652716e02a1837 https://www.encodeproject.org/files/ENCFF615MLT/@@download/ENCFF615MLT.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF219PET bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF112CKJ 194368 ENCODE Processing Pipeline 185bc0c7f742b085b188e3db05effc11 https://www.encodeproject.org/files/ENCFF219PET/@@download/ENCFF219PET.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF689AXJ bed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF122PLB, ENCFF156VOX, ENCFF226PAC 121444 ENCODE Processing Pipeline b61b43061a198f6f74206eee7d7b8e4a https://www.encodeproject.org/files/ENCFF689AXJ/@@download/ENCFF689AXJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF347NJW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF689AXJ 252290 ENCODE Processing Pipeline 784cfa92ae89c39a2eb1c091d5723128 https://www.encodeproject.org/files/ENCFF347NJW/@@download/ENCFF347NJW.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF019GBI bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 301696667 ENCODE Processing Pipeline 6045e2d07412741fe59df2bfc25af61f https://www.encodeproject.org/files/ENCFF019GBI/@@download/ENCFF019GBI.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF156VOX bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 4127787 ENCODE Processing Pipeline 5fb4ad72b7d1e5259ddfb37a52de0c4a https://www.encodeproject.org/files/ENCFF156VOX/@@download/ENCFF156VOX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF112CKJ bed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF122PLB, ENCFF156VOX, ENCFF226PAC 81714 ENCODE Processing Pipeline 6d4396770c9a11fb03e7c5bcb76db251 https://www.encodeproject.org/files/ENCFF112CKJ/@@download/ENCFF112CKJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF352MFY bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF643CGH 1233826078 ENCODE Processing Pipeline aad211a42e30e28c09e8e717d5616735 https://www.encodeproject.org/files/ENCFF352MFY/@@download/ENCFF352MFY.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF294YYR bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF643CGH 1147932892 ENCODE Processing Pipeline 3553740a3d74601abc30d496c60f45cc https://www.encodeproject.org/files/ENCFF294YYR/@@download/ENCFF294YYR.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF902JQQ bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF643CGH 854486716 ENCODE Processing Pipeline 6cbb5091ed4b1f3dab3ad5df860d5f99 https://www.encodeproject.org/files/ENCFF902JQQ/@@download/ENCFF902JQQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF528OSH bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF643CGH 814099956 ENCODE Processing Pipeline 7e288a06e29b725d3d219829a007cf50 https://www.encodeproject.org/files/ENCFF528OSH/@@download/ENCFF528OSH.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF095XPE bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VXQ, ENCFF643CGH 1089263985 ENCODE Processing Pipeline 4e321130283f1e808ce033f3f705a7d0 https://www.encodeproject.org/files/ENCFF095XPE/@@download/ENCFF095XPE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF363SJZ bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VXQ, ENCFF643CGH 691766560 ENCODE Processing Pipeline 6dec61e658b48a1fd09fbd4a8adb88c7 https://www.encodeproject.org/files/ENCFF363SJZ/@@download/ENCFF363SJZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF806NRB bam unfiltered alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VXS, ENCFF643CGH 1020722109 ENCODE Processing Pipeline 2c4dd197bcfb3fbec2e46d62d9e320f9 https://www.encodeproject.org/files/ENCFF806NRB/@@download/ENCFF806NRB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF116MDP bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VXS, ENCFF643CGH 662602065 ENCODE Processing Pipeline c40a2b8febc44e5bef60b235885f259c https://www.encodeproject.org/files/ENCFF116MDP/@@download/ENCFF116MDP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF133HGM bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 173234583 ENCODE Processing Pipeline c00a729412915337eb5116a155b2916b https://www.encodeproject.org/files/ENCFF133HGM/@@download/ENCFF133HGM.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF194AQI bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF116MDP, ENCFF477ZKJ 72796934 ENCODE Processing Pipeline c034da117fa19acc90a5f25046abc613 https://www.encodeproject.org/files/ENCFF194AQI/@@download/ENCFF194AQI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF308CXB bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 287026059 ENCODE Processing Pipeline c57cf03794139883504fc8c94e8410b5 https://www.encodeproject.org/files/ENCFF308CXB/@@download/ENCFF308CXB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF100QMI bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116MDP, ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 513418516 ENCODE Processing Pipeline ab68c56253574ec68b3bff905f48e083 https://www.encodeproject.org/files/ENCFF100QMI/@@download/ENCFF100QMI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF133RGA bigWig signal p-value ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116MDP, ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 149492814 ENCODE Processing Pipeline 84549ae63950afed6063c75fd2e04596 https://www.encodeproject.org/files/ENCFF133RGA/@@download/ENCFF133RGA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF176NQI bigWig fold change over control ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF116MDP, ENCFF477ZKJ 244790161 ENCODE Processing Pipeline d6cc3aa9d918c58fa070956ce852a529 https://www.encodeproject.org/files/ENCFF176NQI/@@download/ENCFF176NQI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF186AWV bed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF237KOH, ENCFF366QIF, ENCFF419RSJ, ENCFF647VGC 131726 ENCODE Processing Pipeline 7549657ec0bdc7bb4f5781b6cb97f5a0 https://www.encodeproject.org/files/ENCFF186AWV/@@download/ENCFF186AWV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF786ENY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF186AWV 265833 ENCODE Processing Pipeline 1e508e66355713547d058463b2f45800 https://www.encodeproject.org/files/ENCFF786ENY/@@download/ENCFF786ENY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF366QIF bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF116MDP, ENCFF477ZKJ 3581980 ENCODE Processing Pipeline d21629a59b3e75219a6f4e4b6dea9f24 https://www.encodeproject.org/files/ENCFF366QIF/@@download/ENCFF366QIF.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF678HBY bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF366QIF 7766125 ENCODE Processing Pipeline f5d9f1340528198b25d237a797f38d13 https://www.encodeproject.org/files/ENCFF678HBY/@@download/ENCFF678HBY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF647VGC bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 4041273 ENCODE Processing Pipeline 333b31b10a21401d7dc0d9550cb9522d https://www.encodeproject.org/files/ENCFF647VGC/@@download/ENCFF647VGC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF249GLP bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF237KOH 11082609 ENCODE Processing Pipeline e92cc3ff002f19b3b651fb05876589ff https://www.encodeproject.org/files/ENCFF249GLP/@@download/ENCFF249GLP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF335NCG bed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF237KOH, ENCFF366QIF, ENCFF419RSJ, ENCFF647VGC 79997 ENCODE Processing Pipeline b3e824c56907b93c27efeaaf28ca0b18 https://www.encodeproject.org/files/ENCFF335NCG/@@download/ENCFF335NCG.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF237KOH bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF116MDP, ENCFF363SJZ, ENCFF477ZKJ, ENCFF710SMS 4473460 ENCODE Processing Pipeline 62d32aa068d87fbba1d431c769835798 https://www.encodeproject.org/files/ENCFF237KOH/@@download/ENCFF237KOH.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF329MFJ bigBed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF647VGC 10105070 ENCODE Processing Pipeline 10e640e2801334c75a69ea0d640ab46f https://www.encodeproject.org/files/ENCFF329MFJ/@@download/ENCFF329MFJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF703OPC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF335NCG 157712 ENCODE Processing Pipeline 2212549a0b81347ec95cee445e10e2f0 https://www.encodeproject.org/files/ENCFF703OPC/@@download/ENCFF703OPC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF586VPX bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF659AFH, ENCFF807MUK 1292545515 ENCODE Processing Pipeline 321092ae394302c2118f49968a9c4da8 https://www.encodeproject.org/files/ENCFF586VPX/@@download/ENCFF586VPX.bam hg19 released low read depth, antibody characterized with exemption ENCFF065YFX bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF807MUK, ENCFF944THM 2018711356 ENCODE Processing Pipeline 802bfb8ca11a2f11ec16334845448127 https://www.encodeproject.org/files/ENCFF065YFX/@@download/ENCFF065YFX.bam hg19 released low read depth, antibody characterized with exemption ENCFF907LQA bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 557651263 ENCODE Processing Pipeline 3c8ce9e5a1ec3acf49617edfdde1689f https://www.encodeproject.org/files/ENCFF907LQA/@@download/ENCFF907LQA.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF480SBN bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF572PHE, ENCFF787RYL, ENCFF840IOC, ENCFF927EKA 919883153 ENCODE Processing Pipeline ca81b0dd166c3571b3e1674c9dad1c6b https://www.encodeproject.org/files/ENCFF480SBN/@@download/ENCFF480SBN.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF006YQQ bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 540870160 ENCODE Processing Pipeline dc7a362df30956357f7a4055bee42b76 https://www.encodeproject.org/files/ENCFF006YQQ/@@download/ENCFF006YQQ.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF899QCA bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF572PHE, ENCFF787RYL, ENCFF840IOC, ENCFF927EKA 996391255 ENCODE Processing Pipeline 2134b07dc71e898bf555c8f8a19b278b https://www.encodeproject.org/files/ENCFF899QCA/@@download/ENCFF899QCA.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF502RRE bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 5696563 ENCODE Processing Pipeline 32f2bd9019aab85b93463fbbde3fa570 https://www.encodeproject.org/files/ENCFF502RRE/@@download/ENCFF502RRE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF045XQS bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 5688990 ENCODE Processing Pipeline fd1959e570e921880dd6b871081b0054 https://www.encodeproject.org/files/ENCFF045XQS/@@download/ENCFF045XQS.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF533JMI bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF502RRE 12996684 ENCODE Processing Pipeline c8f8b75ee05f4e2a91d6b2fa410aa3ef https://www.encodeproject.org/files/ENCFF533JMI/@@download/ENCFF533JMI.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF895ECZ bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF572PHE, ENCFF787RYL, ENCFF840IOC, ENCFF927EKA 6821059 ENCODE Processing Pipeline 47b32aee93bdef1935c73c83718c7dd4 https://www.encodeproject.org/files/ENCFF895ECZ/@@download/ENCFF895ECZ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF185HWE bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF045XQS 13408309 ENCODE Processing Pipeline a01af48cf06e578dabac783699b4b07f https://www.encodeproject.org/files/ENCFF185HWE/@@download/ENCFF185HWE.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF601ICJ bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF895ECZ 13235313 ENCODE Processing Pipeline c2a1ae30978b229377659ac5da7b640e https://www.encodeproject.org/files/ENCFF601ICJ/@@download/ENCFF601ICJ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF015IVD bed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF045XQS, ENCFF502RRE, ENCFF895ECZ 167546 ENCODE Processing Pipeline a80330cca65530179c7e4f172ee420b1 https://www.encodeproject.org/files/ENCFF015IVD/@@download/ENCFF015IVD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF388FCW bigBed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF015IVD 396797 ENCODE Processing Pipeline 5c36ea1868a4141975fcf8a9a60f883b https://www.encodeproject.org/files/ENCFF388FCW/@@download/ENCFF388FCW.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF134XDY bed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF045XQS, ENCFF502RRE, ENCFF895ECZ 206496 ENCODE Processing Pipeline d8344e811dbec6f17020acdb4a272fc5 https://www.encodeproject.org/files/ENCFF134XDY/@@download/ENCFF134XDY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF329SVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF134XDY 540968 ENCODE Processing Pipeline 9ecba6d73e013503633e43224ba1e986 https://www.encodeproject.org/files/ENCFF329SVQ/@@download/ENCFF329SVQ.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF659AFH fastq reads ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 1 50 single-ended 1236300066 Richard Myers, HAIB 6b6ffbbd60215218e67f36ebd3320e02 SRA:SRR5331494 https://www.encodeproject.org/files/ENCFF659AFH/@@download/ENCFF659AFH.fastq.gz Illumina HiSeq 2000 /files/ENCFF225JIA/ released low read depth, antibody characterized with exemption ENCFF944THM fastq reads ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 1 50 single-ended 1914905820 Richard Myers, HAIB 0aea4de91701152b5612ececdb21ff2b SRA:SRR5331493 https://www.encodeproject.org/files/ENCFF944THM/@@download/ENCFF944THM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002BGA/ released low read depth, antibody characterized with exemption ENCFF840IOC bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF659AFH, ENCFF807MUK 865886259 ENCODE Processing Pipeline 4b9f7e56fcb62f62d34227f61dc7e817 https://www.encodeproject.org/files/ENCFF840IOC/@@download/ENCFF840IOC.bam hg19 released low read depth, antibody characterized with exemption ENCFF572PHE bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF807MUK, ENCFF944THM 1455091884 ENCODE Processing Pipeline cb15bb9a0d9dc3c0fda8b4df1b963217 https://www.encodeproject.org/files/ENCFF572PHE/@@download/ENCFF572PHE.bam hg19 released low read depth, antibody characterized with exemption ENCFF672GCG bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF223KCT, ENCFF572PHE, ENCFF840IOC, ENCFF927EKA 924037309 ENCODE Processing Pipeline 834d1af59d0b27ee1bdfefe724a09630 https://www.encodeproject.org/files/ENCFF672GCG/@@download/ENCFF672GCG.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF140GHI bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 421241567 ENCODE Processing Pipeline c8f617aa90fe8a66e063cbd74e417ddc https://www.encodeproject.org/files/ENCFF140GHI/@@download/ENCFF140GHI.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF912SRD bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 568431004 ENCODE Processing Pipeline b6a249187474b615d72b556881e9631b https://www.encodeproject.org/files/ENCFF912SRD/@@download/ENCFF912SRD.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF311FRR bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 606433388 ENCODE Processing Pipeline f0c6afc8390667d8bb9e06c3275b80e9 https://www.encodeproject.org/files/ENCFF311FRR/@@download/ENCFF311FRR.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF413GIF bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 5883774 ENCODE Processing Pipeline 9c5b278573a71d45d07c399a054649bb https://www.encodeproject.org/files/ENCFF413GIF/@@download/ENCFF413GIF.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF794YQY bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 5902503 ENCODE Processing Pipeline 27f17640ac9d66f593f212a03fe30789 https://www.encodeproject.org/files/ENCFF794YQY/@@download/ENCFF794YQY.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF553HHF bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF223KCT, ENCFF572PHE, ENCFF840IOC, ENCFF927EKA 6948814 ENCODE Processing Pipeline 7c4993ce9212ce866e20b999922e32fa https://www.encodeproject.org/files/ENCFF553HHF/@@download/ENCFF553HHF.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF501CXC bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF413GIF 13440807 ENCODE Processing Pipeline 1f2e76ff5e41c070bc48e3400d29264b https://www.encodeproject.org/files/ENCFF501CXC/@@download/ENCFF501CXC.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF824RKL bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 353063159 ENCODE Processing Pipeline 0895f56903ed84dcd5272cc4e57ad829 https://www.encodeproject.org/files/ENCFF824RKL/@@download/ENCFF824RKL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF865SUF bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF223KCT, ENCFF572PHE, ENCFF840IOC, ENCFF927EKA 1020518546 ENCODE Processing Pipeline 06da1aa2a5f52a9a7b2a76f4ade81b4f https://www.encodeproject.org/files/ENCFF865SUF/@@download/ENCFF865SUF.bigWig hg19 archived low read depth, antibody characterized with exemption ENCFF356PQJ bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF794YQY 13046742 ENCODE Processing Pipeline 2979f681e523cc4202498ec54cb1ed56 https://www.encodeproject.org/files/ENCFF356PQJ/@@download/ENCFF356PQJ.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF601ECA bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF553HHF 13237132 ENCODE Processing Pipeline eaf6053b7053266bdf54628e41bef921 https://www.encodeproject.org/files/ENCFF601ECA/@@download/ENCFF601ECA.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF132CNC bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF643CGH, ENCFF659AFH 1293921659 ENCODE Processing Pipeline 3d746d6bfeee228ba5d889d2c5d584bf https://www.encodeproject.org/files/ENCFF132CNC/@@download/ENCFF132CNC.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF117EYR bam unfiltered alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF643CGH, ENCFF944THM 2017606843 ENCODE Processing Pipeline 07ea84fa11f4a4be792dfccda5176b13 https://www.encodeproject.org/files/ENCFF117EYR/@@download/ENCFF117EYR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF346SPJ bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF643CGH, ENCFF659AFH 870473063 ENCODE Processing Pipeline 41e9f739b18ca49736b7443a57fb5fb5 https://www.encodeproject.org/files/ENCFF346SPJ/@@download/ENCFF346SPJ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF386SPJ bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF643CGH, ENCFF944THM 1463075215 ENCODE Processing Pipeline 0cd3fe133f7e2556bc6510b83a90491c https://www.encodeproject.org/files/ENCFF386SPJ/@@download/ENCFF386SPJ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF983DDH bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF183AOM, ENCFF346SPJ 435452252 ENCODE Processing Pipeline a883dd552e356bfa09e4ff0a1220acf5 https://www.encodeproject.org/files/ENCFF983DDH/@@download/ENCFF983DDH.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF224PHC bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF183AOM, ENCFF346SPJ, ENCFF386SPJ, ENCFF747NOF 1004074289 ENCODE Processing Pipeline 8e06fa53e69449cbf2e6d101cf13246c https://www.encodeproject.org/files/ENCFF224PHC/@@download/ENCFF224PHC.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF867OZW bigWig signal p-value ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF386SPJ, ENCFF747NOF 567455313 ENCODE Processing Pipeline 3c2c7b0082d1dbf597124e87e8e44df9 https://www.encodeproject.org/files/ENCFF867OZW/@@download/ENCFF867OZW.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF398VAT bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF183AOM, ENCFF346SPJ 365788161 ENCODE Processing Pipeline cfa4aa51bf5f08d9b7cbc17b2a543aa9 https://www.encodeproject.org/files/ENCFF398VAT/@@download/ENCFF398VAT.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF909VUX bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF386SPJ, ENCFF747NOF 541750733 ENCODE Processing Pipeline 0c3151b8e9da4bf7571c6afcdf963963 https://www.encodeproject.org/files/ENCFF909VUX/@@download/ENCFF909VUX.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF562GJY bigWig fold change over control ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF183AOM, ENCFF346SPJ, ENCFF386SPJ, ENCFF747NOF 971760948 ENCODE Processing Pipeline af7a9a89bdbf8714ca798686539008c0 https://www.encodeproject.org/files/ENCFF562GJY/@@download/ENCFF562GJY.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF455PYV bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF386SPJ, ENCFF747NOF 5633743 ENCODE Processing Pipeline 2187595ea0aa96a6ba5b334a009d2dee https://www.encodeproject.org/files/ENCFF455PYV/@@download/ENCFF455PYV.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF729YXW bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF194XAP 13054300 ENCODE Processing Pipeline 0aa1b6a4fb15cdf69fd8fbb681ba8f0c https://www.encodeproject.org/files/ENCFF729YXW/@@download/ENCFF729YXW.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF194XAP bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF183AOM, ENCFF346SPJ 5762378 ENCODE Processing Pipeline 2a6c137c287268a0a9158b33760653d8 https://www.encodeproject.org/files/ENCFF194XAP/@@download/ENCFF194XAP.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF888OLG bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF183AOM, ENCFF346SPJ, ENCFF386SPJ, ENCFF747NOF 6803695 ENCODE Processing Pipeline 5080892fa50454524b90ba348018bda7 https://www.encodeproject.org/files/ENCFF888OLG/@@download/ENCFF888OLG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF154RHL bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF455PYV 13403797 ENCODE Processing Pipeline 1c6108162f2b6f0b9de8bd72ae08deff https://www.encodeproject.org/files/ENCFF154RHL/@@download/ENCFF154RHL.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF421VXL bigBed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF888OLG 13247692 ENCODE Processing Pipeline 3b159f48b31d43cb728425dd9bfa077d https://www.encodeproject.org/files/ENCFF421VXL/@@download/ENCFF421VXL.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF891JAX bed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF194XAP, ENCFF419RSJ, ENCFF455PYV, ENCFF888OLG 175231 ENCODE Processing Pipeline b93efdb933e03fd9cbceb817f50b86f7 https://www.encodeproject.org/files/ENCFF891JAX/@@download/ENCFF891JAX.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF173NBG bigBed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF891JAX 408517 ENCODE Processing Pipeline e093dc3456115c4489c28bf531b031a5 https://www.encodeproject.org/files/ENCFF173NBG/@@download/ENCFF173NBG.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF855SJG bed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF194XAP, ENCFF419RSJ, ENCFF455PYV, ENCFF888OLG 213654 ENCODE Processing Pipeline 3a660a224b00c18129ab276553653d1f https://www.encodeproject.org/files/ENCFF855SJG/@@download/ENCFF855SJG.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF870HED bigBed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF855SJG 551742 ENCODE Processing Pipeline 22d38f5adda7de0de2d7325d00092c9b https://www.encodeproject.org/files/ENCFF870HED/@@download/ENCFF870HED.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF173PXO bigBed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF711TMS 411605 ENCODE Processing Pipeline 5e4c90c9d69fada20f8c4bb427febc79 https://www.encodeproject.org/files/ENCFF173PXO/@@download/ENCFF173PXO.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF560LXS bigBed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF194YJY 301650 ENCODE Processing Pipeline f2dc5b0b07d1e54f95b5d114fc9d3350 https://www.encodeproject.org/files/ENCFF560LXS/@@download/ENCFF560LXS.bigBed hg19 archived low read depth, antibody characterized with exemption ENCFF194YJY bed narrowPeak conservative idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF413GIF, ENCFF553HHF, ENCFF794YQY 144623 ENCODE Processing Pipeline f06e872ab0f8312854eec27f9bac80f4 https://www.encodeproject.org/files/ENCFF194YJY/@@download/ENCFF194YJY.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF711TMS bed narrowPeak optimal idr thresholded peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1, 2 ENCFF001TDO, ENCFF413GIF, ENCFF553HHF, ENCFF794YQY 173931 ENCODE Processing Pipeline ab21595564b935d834567abac5d3a9c9 https://www.encodeproject.org/files/ENCFF711TMS/@@download/ENCFF711TMS.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF000AYW bigBed broadPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001SVJ 1067940 Bradley Bernstein, Broad aefedf8d525a14f8208acf2185bccef9 https://www.encodeproject.org/files/ENCFF000AYW/@@download/ENCFF000AYW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AYX bam alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZD 1185877491 Bradley Bernstein, Broad ed8d42e2332fb099ca5c72f1e59c2d0e https://www.encodeproject.org/files/ENCFF000AYX/@@download/ENCFF000AYX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AYY bigWig signal ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AYX 270525929 Bradley Bernstein, Broad 87735a021c9bacddab420f0edee6d53c https://www.encodeproject.org/files/ENCFF000AYY/@@download/ENCFF000AYY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AZD fastq reads ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1260895199 Bradley Bernstein, Broad 113ba0c2139190929d4a326d92efb4fb https://www.encodeproject.org/files/ENCFF000AZD/@@download/ENCFF000AZD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF001SVJ bed broadPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AYX 582253 Bradley Bernstein, Broad d051bf5ee269d4e5dab202541eea5cbc https://www.encodeproject.org/files/ENCFF001SVJ/@@download/ENCFF001SVJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF285RDJ bam unfiltered alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZD, ENCFF807MUK 1612338582 ENCODE Processing Pipeline c96b1bb29bf45b1e156685c3394f7d24 https://www.encodeproject.org/files/ENCFF285RDJ/@@download/ENCFF285RDJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF031PSI bam alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZD, ENCFF807MUK 598052651 ENCODE Processing Pipeline 7a1ccac33042772a469c3beb63e33b8e https://www.encodeproject.org/files/ENCFF031PSI/@@download/ENCFF031PSI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF589FCD bam alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZD, ENCFF643CGH 597593761 ENCODE Processing Pipeline c1ee955f5c836cbbe875d40c002d38d6 https://www.encodeproject.org/files/ENCFF589FCD/@@download/ENCFF589FCD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF328JAN bam unfiltered alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZD, ENCFF643CGH 1619431331 ENCODE Processing Pipeline 9696c8bb15926cd5ef959f4a55258a2e https://www.encodeproject.org/files/ENCFF328JAN/@@download/ENCFF328JAN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF377VXP bigWig signal p-value ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF031PSI, ENCFF727XHW 443268362 ENCODE Processing Pipeline 7d0df9770cfe411377777515863c1207 https://www.encodeproject.org/files/ENCFF377VXP/@@download/ENCFF377VXP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF861DUE bigWig fold change over control ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF031PSI, ENCFF727XHW 295111905 ENCODE Processing Pipeline 5c83b1b86740b644552a2d8fbe6f8498 https://www.encodeproject.org/files/ENCFF861DUE/@@download/ENCFF861DUE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF217YTB bed narrowPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF031PSI, ENCFF727XHW 5884837 ENCODE Processing Pipeline e9c545a581e9e311856af6adc5edcd91 https://www.encodeproject.org/files/ENCFF217YTB/@@download/ENCFF217YTB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF838KYH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF217YTB 609448 ENCODE Processing Pipeline a7b0e2944dc8d215c2f659d913345b4a https://www.encodeproject.org/files/ENCFF838KYH/@@download/ENCFF838KYH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF585BOD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF838KYH 1569696 ENCODE Processing Pipeline eeee4bfa52a7b3e9fd9122e2c3b03bca https://www.encodeproject.org/files/ENCFF585BOD/@@download/ENCFF585BOD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF682HKZ bigWig signal p-value ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF589FCD 429946688 ENCODE Processing Pipeline d26e24d1f3be7b9101a06be9aa0ea482 https://www.encodeproject.org/files/ENCFF682HKZ/@@download/ENCFF682HKZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF916KLB bigWig fold change over control ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF589FCD 295567223 ENCODE Processing Pipeline 432d586812d884a3ac09aacf2594b37c https://www.encodeproject.org/files/ENCFF916KLB/@@download/ENCFF916KLB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF251WBM bed narrowPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF589FCD 5885234 ENCODE Processing Pipeline 1ccf05e6410abbc6ffdd6c46b89be348 https://www.encodeproject.org/files/ENCFF251WBM/@@download/ENCFF251WBM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF258KIU bigBed narrowPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF251WBM 13062836 ENCODE Processing Pipeline e2a33871085a86a2c5d95b776dd8d4da https://www.encodeproject.org/files/ENCFF258KIU/@@download/ENCFF258KIU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF256ELK bigBed narrowPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF217YTB 13058853 ENCODE Processing Pipeline c7507cef084475a461562dd79afd2bcf https://www.encodeproject.org/files/ENCFF256ELK/@@download/ENCFF256ELK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF657KEO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF205WRX 1562698 ENCODE Processing Pipeline 1b68f90c8ee7fab62bfcf4c02eebf1f1 https://www.encodeproject.org/files/ENCFF657KEO/@@download/ENCFF657KEO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF205WRX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF251WBM, ENCFF419RSJ 607618 ENCODE Processing Pipeline 96533091e13e519c3fb04b10b28d68c6 https://www.encodeproject.org/files/ENCFF205WRX/@@download/ENCFF205WRX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF848FDX fastq reads ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 2 ENCFF185SQN 1774205111 Michael Snyder, Stanford fc13d89a70fc2ec4a55e34c198e37f21 https://www.encodeproject.org/files/ENCFF848FDX/@@download/ENCFF848FDX.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF185SQN fastq reads ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 1 100 paired-ended 1 ENCFF848FDX 1765393433 Michael Snyder, Stanford 8dd065b0e5d6c408f5a9b8754b94f3f3 https://www.encodeproject.org/files/ENCFF185SQN/@@download/ENCFF185SQN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFF/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF683NIW fastq reads ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 1 ENCFF926JSG 2617353056 Michael Snyder, Stanford dedd3bb41c10697d1717693ae615944e https://www.encodeproject.org/files/ENCFF683NIW/@@download/ENCFF683NIW.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFD/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF926JSG fastq reads ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 1 100 paired-ended 2 ENCFF683NIW 2677487479 Michael Snyder, Stanford f8eaeae1c6d9a82dd327b734a3c02d36 https://www.encodeproject.org/files/ENCFF926JSG/@@download/ENCFF926JSG.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFA/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF047FPB bam unfiltered alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 100 ENCFF185SQN, ENCFF643CGH, ENCFF848FDX 3904466067 ENCODE Processing Pipeline 22ecc31163063bab2491ad044f5e7281 https://www.encodeproject.org/files/ENCFF047FPB/@@download/ENCFF047FPB.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF045OIY bam unfiltered alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF683NIW, ENCFF926JSG 5623918430 ENCODE Processing Pipeline cf0dd6300c5df4ae3edf3099053ea46e https://www.encodeproject.org/files/ENCFF045OIY/@@download/ENCFF045OIY.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF999WUJ bam unfiltered alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 100 ENCFF185SQN, ENCFF807MUK, ENCFF848FDX 3900824391 ENCODE Processing Pipeline 2bee232e2b149935bc9093892b25ef2a https://www.encodeproject.org/files/ENCFF999WUJ/@@download/ENCFF999WUJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF903TVU bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 100 ENCFF185SQN, ENCFF643CGH, ENCFF848FDX 3157960667 ENCODE Processing Pipeline 1052f103eb7d1c7dbc5964e56f6ce758 https://www.encodeproject.org/files/ENCFF903TVU/@@download/ENCFF903TVU.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF112SEL bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF683NIW, ENCFF926JSG 4401758041 ENCODE Processing Pipeline 27920ec7ab9bf52e5e710ead583b7984 https://www.encodeproject.org/files/ENCFF112SEL/@@download/ENCFF112SEL.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF965EQA bam unfiltered alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 100 ENCFF683NIW, ENCFF807MUK, ENCFF926JSG 5619088761 ENCODE Processing Pipeline 0fa1d0a346c5a58998247820d2d4cc04 https://www.encodeproject.org/files/ENCFF965EQA/@@download/ENCFF965EQA.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF719VRZ bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 100 ENCFF185SQN, ENCFF807MUK, ENCFF848FDX 3156315242 ENCODE Processing Pipeline 7eea5bae872526e5e703cc45e5d5e66f https://www.encodeproject.org/files/ENCFF719VRZ/@@download/ENCFF719VRZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF531EIP bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 100 ENCFF683NIW, ENCFF807MUK, ENCFF926JSG 4399151751 ENCODE Processing Pipeline 8341afadc1c8aab19792875e419b83be https://www.encodeproject.org/files/ENCFF531EIP/@@download/ENCFF531EIP.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF808HOF bigWig signal p-value ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF719VRZ 1043495345 ENCODE Processing Pipeline aa82a662bd96a4bc98b639ae833dcdaf https://www.encodeproject.org/files/ENCFF808HOF/@@download/ENCFF808HOF.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF621KMP bigWig signal p-value ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF531EIP 1280586771 ENCODE Processing Pipeline 5bf13d1547739374ea4b159829589fae https://www.encodeproject.org/files/ENCFF621KMP/@@download/ENCFF621KMP.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF048VBE bigWig fold change over control ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF719VRZ 1011723391 ENCODE Processing Pipeline c46511a10a0230df227a43293db84195 https://www.encodeproject.org/files/ENCFF048VBE/@@download/ENCFF048VBE.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF168HMJ bigWig signal p-value ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF903TVU, ENCFF910IKB 1094800578 ENCODE Processing Pipeline cc9d600b9522caf06afb2dff2be07c55 https://www.encodeproject.org/files/ENCFF168HMJ/@@download/ENCFF168HMJ.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF200YFR bigWig signal p-value ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF531EIP, ENCFF581ZJL, ENCFF719VRZ 1665006367 ENCODE Processing Pipeline 4a7a89fa5cbfeb95d2d38c953bee97b3 https://www.encodeproject.org/files/ENCFF200YFR/@@download/ENCFF200YFR.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF469BRK bigWig signal p-value ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF112SEL, ENCFF227IZS, ENCFF903TVU, ENCFF910IKB 1770153437 ENCODE Processing Pipeline 32d7c03e44e209eccd39b8180817fe43 https://www.encodeproject.org/files/ENCFF469BRK/@@download/ENCFF469BRK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF630SOG bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF531EIP, ENCFF581ZJL, ENCFF719VRZ 7165816 ENCODE Processing Pipeline 7b6f951b759382536698cda151ec3666 https://www.encodeproject.org/files/ENCFF630SOG/@@download/ENCFF630SOG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF239MIY bigBed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF648NVD 13335425 ENCODE Processing Pipeline 7df9d6b74529f49aed9ccc22ed68096c https://www.encodeproject.org/files/ENCFF239MIY/@@download/ENCFF239MIY.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF379NRU bigWig signal p-value ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF112SEL, ENCFF227IZS 1168724612 ENCODE Processing Pipeline c7240d4be67622a642f1a40ac1858dbe https://www.encodeproject.org/files/ENCFF379NRU/@@download/ENCFF379NRU.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF745VDK bigWig fold change over control ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF531EIP 1233028751 ENCODE Processing Pipeline 0c991c68ac3c04c9b054ca499901cfa6 https://www.encodeproject.org/files/ENCFF745VDK/@@download/ENCFF745VDK.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF898OLL bigWig fold change over control ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF112SEL, ENCFF227IZS, ENCFF903TVU, ENCFF910IKB 2032644428 ENCODE Processing Pipeline 58ef0ef4e8100ada2f230cfb9be22ca1 https://www.encodeproject.org/files/ENCFF898OLL/@@download/ENCFF898OLL.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF139EAR bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF531EIP 6591880 ENCODE Processing Pipeline 9325df784d9bedd79174dcf72faeafdf https://www.encodeproject.org/files/ENCFF139EAR/@@download/ENCFF139EAR.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF180FHR bigBed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF139EAR 13197817 ENCODE Processing Pipeline 726feb54a82671a74dbbc302f1c4da6e https://www.encodeproject.org/files/ENCFF180FHR/@@download/ENCFF180FHR.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF220IME bed narrowPeak conservative idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF139EAR, ENCFF630SOG, ENCFF648NVD 112992 ENCODE Processing Pipeline 6c16eb050eb226edb03b2d3307ecdd03 https://www.encodeproject.org/files/ENCFF220IME/@@download/ENCFF220IME.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF007OCA bigWig fold change over control ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF531EIP, ENCFF581ZJL, ENCFF719VRZ 2032168241 ENCODE Processing Pipeline 24f6845fb2bb3d06ce85630018155f01 https://www.encodeproject.org/files/ENCFF007OCA/@@download/ENCFF007OCA.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF748ZTS bigWig fold change over control ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF903TVU, ENCFF910IKB 1009200407 ENCODE Processing Pipeline 2fc8ff7a54d102a183f30ae262b96e98 https://www.encodeproject.org/files/ENCFF748ZTS/@@download/ENCFF748ZTS.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF648NVD bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF719VRZ 6216410 ENCODE Processing Pipeline 87ad634f7b226f042012f921a2cbbf20 https://www.encodeproject.org/files/ENCFF648NVD/@@download/ENCFF648NVD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF801XJL bigBed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF630SOG 13135905 ENCODE Processing Pipeline bc13fc0448aff066fa8148cc1dad7c15 https://www.encodeproject.org/files/ENCFF801XJL/@@download/ENCFF801XJL.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF677OWM bed narrowPeak optimal idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF001TDO, ENCFF139EAR, ENCFF630SOG, ENCFF648NVD 149805 ENCODE Processing Pipeline a3af5e542702471717992287eaae5b71 https://www.encodeproject.org/files/ENCFF677OWM/@@download/ENCFF677OWM.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF986ACD bigBed narrowPeak conservative idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF220IME 314124 ENCODE Processing Pipeline 0da747eae2090c4f3b58f9775ba34fe6 https://www.encodeproject.org/files/ENCFF986ACD/@@download/ENCFF986ACD.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF932FDI bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF903TVU, ENCFF910IKB 6212749 ENCODE Processing Pipeline 21b600e0c137e8832ad885f0168c5d30 https://www.encodeproject.org/files/ENCFF932FDI/@@download/ENCFF932FDI.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF251XKK bigWig fold change over control ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF112SEL, ENCFF227IZS 1238596637 ENCODE Processing Pipeline 4d7cf1057b57071e19574297c48aad5d https://www.encodeproject.org/files/ENCFF251XKK/@@download/ENCFF251XKK.bigWig GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF111OBX bigBed narrowPeak optimal idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF677OWM 380509 ENCODE Processing Pipeline a3f87bfce07994ddd592ebc4a4772ecc https://www.encodeproject.org/files/ENCFF111OBX/@@download/ENCFF111OBX.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF479SHP bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF112SEL, ENCFF227IZS 6589704 ENCODE Processing Pipeline 1e81fc52846e2e92f25c6fa35350ad15 https://www.encodeproject.org/files/ENCFF479SHP/@@download/ENCFF479SHP.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF500WWL bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF112SEL, ENCFF227IZS, ENCFF903TVU, ENCFF910IKB 7162057 ENCODE Processing Pipeline 06109ab096430611900779b666679020 https://www.encodeproject.org/files/ENCFF500WWL/@@download/ENCFF500WWL.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF396OIO bigBed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF932FDI 13344935 ENCODE Processing Pipeline 3c38213ce0d1f119854e873b281f49ea https://www.encodeproject.org/files/ENCFF396OIO/@@download/ENCFF396OIO.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF676TFX bigBed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF479SHP 13206240 ENCODE Processing Pipeline 07f0cb40175a5739d8db7fb43b5eae54 https://www.encodeproject.org/files/ENCFF676TFX/@@download/ENCFF676TFX.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF101LOL bigBed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF500WWL 13140515 ENCODE Processing Pipeline 190d0555bffca2d06b1e48bbbfbf50f0 https://www.encodeproject.org/files/ENCFF101LOL/@@download/ENCFF101LOL.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF145PDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF779KIS 378580 ENCODE Processing Pipeline ada32f26f604d75ce2d0af68e5d17420 https://www.encodeproject.org/files/ENCFF145PDQ/@@download/ENCFF145PDQ.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF847JCH bed narrowPeak conservative idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF479SHP, ENCFF500WWL, ENCFF932FDI 111826 ENCODE Processing Pipeline 0598671520337ab37267c841df24e401 https://www.encodeproject.org/files/ENCFF847JCH/@@download/ENCFF847JCH.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF823GNG bigBed narrowPeak conservative idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF847JCH 264566 ENCODE Processing Pipeline 08a0ce1ce332151d660b7867ab1767be https://www.encodeproject.org/files/ENCFF823GNG/@@download/ENCFF823GNG.bigBed GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF779KIS bed narrowPeak optimal idr thresholded peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1, 2 ENCFF419RSJ, ENCFF479SHP, ENCFF500WWL, ENCFF932FDI 147610 ENCODE Processing Pipeline ef3e0a027be245d770f97067ee92e74e https://www.encodeproject.org/files/ENCFF779KIS/@@download/ENCFF779KIS.bed.gz GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF000YPE fastq reads ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 329300728 Sherman Weissman, Yale 9a3a08ff64b1c111c26c162ea3248c60 https://www.encodeproject.org/files/ENCFF000YPE/@@download/ENCFF000YPE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPG fastq reads ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 647167711 Sherman Weissman, Yale 64858984304fa04a903d5482f4de8eac https://www.encodeproject.org/files/ENCFF000YPG/@@download/ENCFF000YPG.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPF/ released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWD bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPE 423263036 Sherman Weissman, Yale 677ce195839dd2290a9ec9accfa33bd9 https://www.encodeproject.org/files/ENCFF000YWD/@@download/ENCFF000YWD.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWE bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOE 514380 Sherman Weissman, Yale bb08be0179d566580df43004c4644a55 https://www.encodeproject.org/files/ENCFF000YWE/@@download/ENCFF000YWE.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWF bigWig signal ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 309316620 Sherman Weissman, Yale d1a90667a60324bd242c793a70e535c0 https://www.encodeproject.org/files/ENCFF000YWF/@@download/ENCFF000YWF.bigWig hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YWG bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPG 801462968 Sherman Weissman, Yale f1176da0d135232793db3617d3104252 https://www.encodeproject.org/files/ENCFF000YWG/@@download/ENCFF000YWG.bam hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VOE bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 194293 Sherman Weissman, Yale 12aaf5f1a39afac91f5ca2aba90eb3dd https://www.encodeproject.org/files/ENCFF001VOE/@@download/ENCFF001VOE.bed.gz hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CXN bed narrowPeak optimal idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 271627 ENCODE Consortium Analysis Working Group 2e251f0a3e82ac18e6e3da60a5ce00f8 https://www.encodeproject.org/files/ENCFF002CXN/@@download/ENCFF002CXN.bed.gz hg19 archived control low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF189QYI bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXN 737824 ENCODE Consortium e980cb12a7c54def08f32cbf38db1b50 https://www.encodeproject.org/files/ENCFF189QYI/@@download/ENCFF189QYI.bigBed hg19 archived control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF439MGC bam unfiltered alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPE, ENCFF807MUK 423741176 ENCODE Processing Pipeline 6624e18c79355e37cbbec69c04681158 https://www.encodeproject.org/files/ENCFF439MGC/@@download/ENCFF439MGC.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF298OSL bam unfiltered alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPE, ENCFF643CGH 424305738 ENCODE Processing Pipeline e000d0154fff7d42f819b334db5ba299 https://www.encodeproject.org/files/ENCFF298OSL/@@download/ENCFF298OSL.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF788CTS bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPE, ENCFF807MUK 285220741 ENCODE Processing Pipeline 686df9f5163b705a3a63433754eeaa44 https://www.encodeproject.org/files/ENCFF788CTS/@@download/ENCFF788CTS.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF475BJQ bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPE, ENCFF643CGH 284873727 ENCODE Processing Pipeline 0abdbfc03878a1151752df5b4390bec4 https://www.encodeproject.org/files/ENCFF475BJQ/@@download/ENCFF475BJQ.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF675OWG bam unfiltered alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPG, ENCFF643CGH 729367507 ENCODE Processing Pipeline 6a2d9c5b2905e63242b3edfdc41e5dc0 https://www.encodeproject.org/files/ENCFF675OWG/@@download/ENCFF675OWG.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF278NAG bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPG, ENCFF807MUK 338023760 ENCODE Processing Pipeline f3a03006934aa7929e816df99a79ae98 https://www.encodeproject.org/files/ENCFF278NAG/@@download/ENCFF278NAG.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF275VZQ bam unfiltered alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPG, ENCFF807MUK 727492863 ENCODE Processing Pipeline 4652ca4833c5de7c74bb9c92ed9bdb02 https://www.encodeproject.org/files/ENCFF275VZQ/@@download/ENCFF275VZQ.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF929JPT bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPG, ENCFF643CGH 337545118 ENCODE Processing Pipeline ccb509b4c245411e0e83a3882e99af3f https://www.encodeproject.org/files/ENCFF929JPT/@@download/ENCFF929JPT.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF736OTR bigWig signal p-value ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278NAG, ENCFF788CTS, ENCFF998GMZ 315588562 ENCODE Processing Pipeline 9bb9749727db4b0c221c0e1009969140 https://www.encodeproject.org/files/ENCFF736OTR/@@download/ENCFF736OTR.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF940MAL bigWig signal p-value ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF788CTS, ENCFF998GMZ 296046435 ENCODE Processing Pipeline 9c0d9f238dc39036ef057946b85d3010 https://www.encodeproject.org/files/ENCFF940MAL/@@download/ENCFF940MAL.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF443NDS bigWig signal p-value ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278NAG, ENCFF998GMZ 249695647 ENCODE Processing Pipeline c6880bb3901ea638a11e1b162ddbe534 https://www.encodeproject.org/files/ENCFF443NDS/@@download/ENCFF443NDS.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF510ERL bigWig fold change over control ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF788CTS, ENCFF998GMZ 141620488 ENCODE Processing Pipeline 732012a195ed21081cd5a3963f590b5f https://www.encodeproject.org/files/ENCFF510ERL/@@download/ENCFF510ERL.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF623NTU bigWig fold change over control ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278NAG, ENCFF788CTS, ENCFF998GMZ 254603629 ENCODE Processing Pipeline e2a2258e7e61d985ffb0d096ad276352 https://www.encodeproject.org/files/ENCFF623NTU/@@download/ENCFF623NTU.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF195EME bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278NAG, ENCFF998GMZ 4582388 ENCODE Processing Pipeline 2f94b0529ae9ecc665a2ddfb4eaa134b https://www.encodeproject.org/files/ENCFF195EME/@@download/ENCFF195EME.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF841MAF bigWig fold change over control ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278NAG, ENCFF998GMZ 149528462 ENCODE Processing Pipeline c47c628d35e2ab6fd6496d5f5d4b9381 https://www.encodeproject.org/files/ENCFF841MAF/@@download/ENCFF841MAF.bigWig hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF196LRG bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF788CTS, ENCFF998GMZ 5084258 ENCODE Processing Pipeline 938c4d948378101e300b807bce985979 https://www.encodeproject.org/files/ENCFF196LRG/@@download/ENCFF196LRG.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF274EWP bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278NAG, ENCFF788CTS, ENCFF998GMZ 5988657 ENCODE Processing Pipeline 1135ed2b1bb71be45b98986e3e1bd661 https://www.encodeproject.org/files/ENCFF274EWP/@@download/ENCFF274EWP.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF106UQL bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF196LRG 10964743 ENCODE Processing Pipeline 03a09b5f7b339831fb1b1b8c8b0cf99b https://www.encodeproject.org/files/ENCFF106UQL/@@download/ENCFF106UQL.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF286HZT bed narrowPeak conservative idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF195EME, ENCFF196LRG, ENCFF274EWP 305034 ENCODE Processing Pipeline 90cfa1e7c0776ce0feae8e32068157cf https://www.encodeproject.org/files/ENCFF286HZT/@@download/ENCFF286HZT.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF826OYU bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF195EME 11216588 ENCODE Processing Pipeline f5d7af778d39ab04661f5a186a910e8e https://www.encodeproject.org/files/ENCFF826OYU/@@download/ENCFF826OYU.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF061YOF bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF274EWP 12398898 ENCODE Processing Pipeline 5888438de54d0f72ce92cc82f290be95 https://www.encodeproject.org/files/ENCFF061YOF/@@download/ENCFF061YOF.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF206YXX bed narrowPeak optimal idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF195EME, ENCFF196LRG, ENCFF274EWP 326220 ENCODE Processing Pipeline c00b821c15db119f2de9065176aee084 https://www.encodeproject.org/files/ENCFF206YXX/@@download/ENCFF206YXX.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF205FCW bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF286HZT 660550 ENCODE Processing Pipeline 1abd3dfc0c95d0bca8743375b8c50898 https://www.encodeproject.org/files/ENCFF205FCW/@@download/ENCFF205FCW.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF369FRB bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF206YXX 690847 ENCODE Processing Pipeline 348ad2026b4dd35dbf5c79c05206fb59 https://www.encodeproject.org/files/ENCFF369FRB/@@download/ENCFF369FRB.bigBed hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF989FUJ bigWig signal p-value ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF475BJQ 255864977 ENCODE Processing Pipeline 5882d5a6674e44b23123818cfb6273d5 https://www.encodeproject.org/files/ENCFF989FUJ/@@download/ENCFF989FUJ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF861NNZ bigWig fold change over control ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF475BJQ 142615713 ENCODE Processing Pipeline 4b8bd852cade26a2adb41cbbed1c0a20 https://www.encodeproject.org/files/ENCFF861NNZ/@@download/ENCFF861NNZ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF743ZUA bigWig signal p-value ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF929JPT 286590838 ENCODE Processing Pipeline c722a05e9ba503258d9fac16acdd387f https://www.encodeproject.org/files/ENCFF743ZUA/@@download/ENCFF743ZUA.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF531BLJ bigWig signal p-value ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF475BJQ, ENCFF929JPT 315095563 ENCODE Processing Pipeline 071327219cce5d4bcd87937d1fb47a90 https://www.encodeproject.org/files/ENCFF531BLJ/@@download/ENCFF531BLJ.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF595XHL bigWig fold change over control ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF929JPT 149266035 ENCODE Processing Pipeline 823b44d8f978a2baa7fffc209b787b31 https://www.encodeproject.org/files/ENCFF595XHL/@@download/ENCFF595XHL.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF904LCF bigWig fold change over control ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF475BJQ, ENCFF929JPT 253027126 ENCODE Processing Pipeline 41023bb285e27510de7a3ff2939a7c74 https://www.encodeproject.org/files/ENCFF904LCF/@@download/ENCFF904LCF.bigWig GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF295DIE bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF332CUX, ENCFF475BJQ 4994098 ENCODE Processing Pipeline 07d06a7fb9ac465ce1c0edfb3082eca9 https://www.encodeproject.org/files/ENCFF295DIE/@@download/ENCFF295DIE.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF491BJA bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF332CUX, ENCFF929JPT 4549731 ENCODE Processing Pipeline ef8f032f31d6fe84d9021b8d4ab23b58 https://www.encodeproject.org/files/ENCFF491BJA/@@download/ENCFF491BJA.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF856BRP bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF332CUX, ENCFF475BJQ, ENCFF929JPT 6020971 ENCODE Processing Pipeline 66331f367d600d369f3acbe698188ec6 https://www.encodeproject.org/files/ENCFF856BRP/@@download/ENCFF856BRP.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF523HWM bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295DIE 10850527 ENCODE Processing Pipeline abeb1e103a2387de887c4be61a428630 https://www.encodeproject.org/files/ENCFF523HWM/@@download/ENCFF523HWM.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF119ETL bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF491BJA 11176560 ENCODE Processing Pipeline 213b062159a29514b5e0423999858a5b https://www.encodeproject.org/files/ENCFF119ETL/@@download/ENCFF119ETL.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF195TVF bigBed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF856BRP 12444639 ENCODE Processing Pipeline e183ac09266cb52a8190ae8d375e9434 https://www.encodeproject.org/files/ENCFF195TVF/@@download/ENCFF195TVF.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF716CWM bed narrowPeak conservative idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295DIE, ENCFF419RSJ, ENCFF491BJA, ENCFF856BRP 313213 ENCODE Processing Pipeline 5158e8f62bcdb156bc3be752650f8133 https://www.encodeproject.org/files/ENCFF716CWM/@@download/ENCFF716CWM.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF671FFN bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF716CWM 815214 ENCODE Processing Pipeline 0e58b183f1d0005d78487ce301ac09d9 https://www.encodeproject.org/files/ENCFF671FFN/@@download/ENCFF671FFN.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF798PUX bed narrowPeak optimal idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295DIE, ENCFF419RSJ, ENCFF491BJA, ENCFF856BRP 336981 ENCODE Processing Pipeline bc2c108096d06887b68705dd72015e76 https://www.encodeproject.org/files/ENCFF798PUX/@@download/ENCFF798PUX.bed.gz GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF390DQM bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF798PUX 855268 ENCODE Processing Pipeline 7fe7095ccc95ead588ece385e95942e4 https://www.encodeproject.org/files/ENCFF390DQM/@@download/ENCFF390DQM.bigBed GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000PUV bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PVB 457444515 Richard Myers, HAIB 208f64908dd7b6b732ea82d15a1b8cb2 https://www.encodeproject.org/files/ENCFF000PUV/@@download/ENCFF000PUV.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PUW bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PVD 641824940 Richard Myers, HAIB e4ac980f84b9f633de49b5cfd9007b13 https://www.encodeproject.org/files/ENCFF000PUW/@@download/ENCFF000PUW.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PUX bigBed broadPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UIS 956513 Richard Myers, HAIB be80a88c22313653c1805ac5428a74a4 https://www.encodeproject.org/files/ENCFF000PUX/@@download/ENCFF000PUX.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PUY bigBed broadPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UIT 1030276 Richard Myers, HAIB 0f745d3a40ad208fea476f5c3c5b1b2a https://www.encodeproject.org/files/ENCFF000PUY/@@download/ENCFF000PUY.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PUZ bigWig raw signal ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 20849392 Richard Myers, HAIB 53b1ac7b7636d39f6ce9acf21d99d353 https://www.encodeproject.org/files/ENCFF000PUZ/@@download/ENCFF000PUZ.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PVA bigWig raw signal ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 24670133 Richard Myers, HAIB 8051878bab8209dc6dfe2d3288f968e4 https://www.encodeproject.org/files/ENCFF000PVA/@@download/ENCFF000PVA.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000PVB fastq reads ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 466935464 Richard Myers, HAIB 266df8d25aa4ef5c5ff14f3787c05be6 https://www.encodeproject.org/files/ENCFF000PVB/@@download/ENCFF000PVB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PVT/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PVD fastq reads ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 604205721 Richard Myers, HAIB 1ef1852672f7a561f7cc886b35842755 https://www.encodeproject.org/files/ENCFF000PVD/@@download/ENCFF000PVD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000PVT/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UIS bed broadPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 551604 Richard Myers, HAIB 4ca36eff437ba529a98491c43e6891ef https://www.encodeproject.org/files/ENCFF001UIS/@@download/ENCFF001UIS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UIT bed broadPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 539681 Richard Myers, HAIB dae6120f5cbf78a6950ed1cce93f8e1b https://www.encodeproject.org/files/ENCFF001UIT/@@download/ENCFF001UIT.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CLL bed narrowPeak optimal idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 627799 ENCODE Consortium Analysis Working Group 7e637039254599be3cfce759110c8d8d https://www.encodeproject.org/files/ENCFF002CLL/@@download/ENCFF002CLL.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF992SUO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CLL 1194510 ENCODE Consortium 483eac89f985b21f1f361c9ece46a539 https://www.encodeproject.org/files/ENCFF992SUO/@@download/ENCFF992SUO.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF022RML bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVB, ENCFF643CGH 206418052 ENCODE Processing Pipeline 36cde1749a1c0cdff774d270c8b8c89d https://www.encodeproject.org/files/ENCFF022RML/@@download/ENCFF022RML.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF930MZF bam unfiltered alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVB, ENCFF643CGH 539936928 ENCODE Processing Pipeline 307d0cd6539d2b46951c31c8748c0f82 https://www.encodeproject.org/files/ENCFF930MZF/@@download/ENCFF930MZF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF500PRD bam unfiltered alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVD, ENCFF643CGH 768563185 ENCODE Processing Pipeline 138941c321ceac57c32de344c53cd50f https://www.encodeproject.org/files/ENCFF500PRD/@@download/ENCFF500PRD.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF727LFV bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVD, ENCFF643CGH 497226916 ENCODE Processing Pipeline 903aa9ce2ae4af77e3b132ef5fbe72ac https://www.encodeproject.org/files/ENCFF727LFV/@@download/ENCFF727LFV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF564BIO bam unfiltered alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVD, ENCFF807MUK 767769587 ENCODE Processing Pipeline e0089906ebf19cb80def176d414acb20 https://www.encodeproject.org/files/ENCFF564BIO/@@download/ENCFF564BIO.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF711WGT bam unfiltered alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVB, ENCFF807MUK 539453496 ENCODE Processing Pipeline 274b1974621d2fba1ea428908b181fe3 https://www.encodeproject.org/files/ENCFF711WGT/@@download/ENCFF711WGT.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF025EMH bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVB, ENCFF807MUK 206443628 ENCODE Processing Pipeline 782b319c313a9ae697122ebed824be32 https://www.encodeproject.org/files/ENCFF025EMH/@@download/ENCFF025EMH.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF744BNI bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVD, ENCFF807MUK 497302690 ENCODE Processing Pipeline 98014e5564d7c0a04b9758d445ac079d https://www.encodeproject.org/files/ENCFF744BNI/@@download/ENCFF744BNI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF485OIB bigWig signal p-value ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF025EMH, ENCFF234MAA 263466841 ENCODE Processing Pipeline 2bd0c7849f08749a7b46302325cb7581 https://www.encodeproject.org/files/ENCFF485OIB/@@download/ENCFF485OIB.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF003WNJ bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF025EMH, ENCFF234MAA 3377687 ENCODE Processing Pipeline d4b06404255adc7ffb5c2ff268b7bf7d https://www.encodeproject.org/files/ENCFF003WNJ/@@download/ENCFF003WNJ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF383PTC bigBed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF129JER 12081117 ENCODE Processing Pipeline 18d61c6bf289288ffdd9620beccd493d https://www.encodeproject.org/files/ENCFF383PTC/@@download/ENCFF383PTC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF423WPT bed narrowPeak optimal idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003WNJ, ENCFF129JER, ENCFF821DBG 694495 ENCODE Processing Pipeline 85ab5f98abfeec0e40ef95c94ad9bf20 https://www.encodeproject.org/files/ENCFF423WPT/@@download/ENCFF423WPT.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF703LGX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF423WPT 1281680 ENCODE Processing Pipeline c4cb757b1cef4652c052569362f5e487 https://www.encodeproject.org/files/ENCFF703LGX/@@download/ENCFF703LGX.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF129JER bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234MAA, ENCFF744BNI 5459312 ENCODE Processing Pipeline 2862010fb32255d45088e7fc2a69a287 https://www.encodeproject.org/files/ENCFF129JER/@@download/ENCFF129JER.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF821DBG bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF025EMH, ENCFF234MAA, ENCFF744BNI 6090132 ENCODE Processing Pipeline e6f34b8af35ec6a068f5e1f21e0f81e6 https://www.encodeproject.org/files/ENCFF821DBG/@@download/ENCFF821DBG.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF305LMG bigBed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF821DBG 12255975 ENCODE Processing Pipeline d6b80226b0b6f649124293ae7f738a77 https://www.encodeproject.org/files/ENCFF305LMG/@@download/ENCFF305LMG.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF429JRY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF347JZD 1026660 ENCODE Processing Pipeline 711cc64fc3e14c97c013533160dc03bc https://www.encodeproject.org/files/ENCFF429JRY/@@download/ENCFF429JRY.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF469OUV bigWig fold change over control ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234MAA, ENCFF744BNI 201837788 ENCODE Processing Pipeline d2d12a2c748fcfc79d6c425df68f224d https://www.encodeproject.org/files/ENCFF469OUV/@@download/ENCFF469OUV.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF730VAQ bigWig fold change over control ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF025EMH, ENCFF234MAA 101304839 ENCODE Processing Pipeline 0f81e90b1b76a4d3c6d0a7dee9c275b1 https://www.encodeproject.org/files/ENCFF730VAQ/@@download/ENCFF730VAQ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF204ULN bigWig signal p-value ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234MAA, ENCFF744BNI 320052518 ENCODE Processing Pipeline aa2ff47bd27f34292b310c026f0d8c58 https://www.encodeproject.org/files/ENCFF204ULN/@@download/ENCFF204ULN.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF784GQS bigWig signal p-value ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF025EMH, ENCFF234MAA, ENCFF744BNI 314841599 ENCODE Processing Pipeline 48d898dfea26a01ffad911faeeb8388a https://www.encodeproject.org/files/ENCFF784GQS/@@download/ENCFF784GQS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF878OMZ bigWig fold change over control ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF025EMH, ENCFF234MAA, ENCFF744BNI 268461408 ENCODE Processing Pipeline 45cf835768e7844137c70f8729ffc161 https://www.encodeproject.org/files/ENCFF878OMZ/@@download/ENCFF878OMZ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF060BYY bigBed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF003WNJ 7764379 ENCODE Processing Pipeline 6a50cf04ed55793e834b955f55c80cf3 https://www.encodeproject.org/files/ENCFF060BYY/@@download/ENCFF060BYY.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF347JZD bed narrowPeak conservative idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003WNJ, ENCFF129JER, ENCFF821DBG 514377 ENCODE Processing Pipeline 9275ecae47399600f0565ab4779dab90 https://www.encodeproject.org/files/ENCFF347JZD/@@download/ENCFF347JZD.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF435TFP bigWig signal p-value ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF166HHP, ENCFF727LFV 312170761 ENCODE Processing Pipeline 2900fe7c01bd216fa2480cc9697b57ad https://www.encodeproject.org/files/ENCFF435TFP/@@download/ENCFF435TFP.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF638UUJ bigWig signal p-value ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF022RML, ENCFF166HHP, ENCFF727LFV 315412961 ENCODE Processing Pipeline 9977494c1dfeacb2defe114dde538677 https://www.encodeproject.org/files/ENCFF638UUJ/@@download/ENCFF638UUJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF402PZJ bigBed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF777TLS 12434380 ENCODE Processing Pipeline 006672ef45168a4e2ba12c98a4b3a06d https://www.encodeproject.org/files/ENCFF402PZJ/@@download/ENCFF402PZJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF929SUN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF560WFS 1319197 ENCODE Processing Pipeline 26b12f371f6d7630d10f90bdd970a985 https://www.encodeproject.org/files/ENCFF929SUN/@@download/ENCFF929SUN.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF351KKK bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF166HHP, ENCFF727LFV 5458874 ENCODE Processing Pipeline d3a3d45aefb777e9159e44f9e452f449 https://www.encodeproject.org/files/ENCFF351KKK/@@download/ENCFF351KKK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF509LBE bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF022RML, ENCFF166HHP 3744818 ENCODE Processing Pipeline 11ea90a06f989a0be7de0626603f0c3b https://www.encodeproject.org/files/ENCFF509LBE/@@download/ENCFF509LBE.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF560WFS bed narrowPeak optimal idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF351KKK, ENCFF419RSJ, ENCFF509LBE, ENCFF777TLS 715237 ENCODE Processing Pipeline bc7aef87920ca24d27c11889dfb66f7f https://www.encodeproject.org/files/ENCFF560WFS/@@download/ENCFF560WFS.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF644YVA bigWig fold change over control ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF166HHP, ENCFF727LFV 200024533 ENCODE Processing Pipeline f08aa2ee6d44be7a012c643746ae32eb https://www.encodeproject.org/files/ENCFF644YVA/@@download/ENCFF644YVA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF188RNP bigBed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF351KKK 12084756 ENCODE Processing Pipeline 6b8a7540fb1a4f5b223631ea1c9316a2 https://www.encodeproject.org/files/ENCFF188RNP/@@download/ENCFF188RNP.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF580EKJ bigBed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF509LBE 8280792 ENCODE Processing Pipeline 251c2ceef103c9cf4c042cea9cb0522e https://www.encodeproject.org/files/ENCFF580EKJ/@@download/ENCFF580EKJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF039YPW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF766ZRX 1039456 ENCODE Processing Pipeline f40144b94c6bd2016efabad47256ea6a https://www.encodeproject.org/files/ENCFF039YPW/@@download/ENCFF039YPW.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF757XBB bigWig signal p-value ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF022RML, ENCFF166HHP 227486867 ENCODE Processing Pipeline 3fda2853f95395182809bef071beca81 https://www.encodeproject.org/files/ENCFF757XBB/@@download/ENCFF757XBB.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF609KNN bigWig fold change over control ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF022RML, ENCFF166HHP 100653779 ENCODE Processing Pipeline 0fabdf79187fff1e31cf9c9121fea9f7 https://www.encodeproject.org/files/ENCFF609KNN/@@download/ENCFF609KNN.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF074TFD bigWig fold change over control ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF022RML, ENCFF166HHP, ENCFF727LFV 270958781 ENCODE Processing Pipeline 3336497bb83304203aa6dc7b327ed0d0 https://www.encodeproject.org/files/ENCFF074TFD/@@download/ENCFF074TFD.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF777TLS bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF022RML, ENCFF166HHP, ENCFF727LFV 6233155 ENCODE Processing Pipeline 03bfc7583a44fd9d5a0fe735c2a0815a https://www.encodeproject.org/files/ENCFF777TLS/@@download/ENCFF777TLS.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF766ZRX bed narrowPeak conservative idr thresholded peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF351KKK, ENCFF419RSJ, ENCFF509LBE, ENCFF777TLS 521693 ENCODE Processing Pipeline 772b45610c883ead1173c7f7ec0c624d https://www.encodeproject.org/files/ENCFF766ZRX/@@download/ENCFF766ZRX.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QZB bam alignments ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QZN 1308785872 Richard Myers, HAIB 4f9f33dc4924e842655927721d7ca736 https://www.encodeproject.org/files/ENCFF000QZB/@@download/ENCFF000QZB.bam hg19 released biological replicates with identical biosample ENCFF000QZC bigBed broadPeak peaks ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPL 636549 Richard Myers, HAIB aae9f689a3bee8713e82bc7eca73a83d https://www.encodeproject.org/files/ENCFF000QZC/@@download/ENCFF000QZC.bigBed hg19 released biological replicates with identical biosample ENCFF000QZD bigBed broadPeak peaks ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPM 617410 Richard Myers, HAIB f27fc2e0ad2f441b047ebd50246ebe41 https://www.encodeproject.org/files/ENCFF000QZD/@@download/ENCFF000QZD.bigBed hg19 released biological replicates with identical biosample ENCFF000QZE bam alignments ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZQ 1356106884 Richard Myers, HAIB d7f2595a353d922114482b9de87a5c4a https://www.encodeproject.org/files/ENCFF000QZE/@@download/ENCFF000QZE.bam hg19 released biological replicates with identical biosample ENCFF000QZF bigWig raw signal ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 138624672 Richard Myers, HAIB 942fb3f52e147b1cf8087480d9a51f3d https://www.encodeproject.org/files/ENCFF000QZF/@@download/ENCFF000QZF.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QZH bigWig raw signal ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 148229796 Richard Myers, HAIB ad3c17b679da6fd5ca3175f503976efa https://www.encodeproject.org/files/ENCFF000QZH/@@download/ENCFF000QZH.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QZN fastq reads ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1341415617 Richard Myers, HAIB 07764971cc8084bc57852210b4000149 https://www.encodeproject.org/files/ENCFF000QZN/@@download/ENCFF000QZN.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF000QZQ fastq reads ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1400941227 Richard Myers, HAIB 1871e7f996681b4e055abc528b47b522 https://www.encodeproject.org/files/ENCFF000QZQ/@@download/ENCFF000QZQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPL bed broadPeak peaks ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 426731 Richard Myers, HAIB fe9d1a3e945e875f2daa46478b2a3c2b https://www.encodeproject.org/files/ENCFF001UPL/@@download/ENCFF001UPL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UPM bed broadPeak peaks ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 407648 Richard Myers, HAIB cc4529d3b3627a89ab2d9e1dfca58687 https://www.encodeproject.org/files/ENCFF001UPM/@@download/ENCFF001UPM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF745YWL bigWig fold change over control ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF495IVB, ENCFF565NDL, ENCFF629IGF 896121119 ENCODE Processing Pipeline 76b17b7d8a57d6984722fcdfbe5a5be2 https://www.encodeproject.org/files/ENCFF745YWL/@@download/ENCFF745YWL.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF361ZXG bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF476SFW 13005717 ENCODE Processing Pipeline 862a1fd02689247d51beac5ef06806b6 https://www.encodeproject.org/files/ENCFF361ZXG/@@download/ENCFF361ZXG.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF034GYQ bed narrowPeak optimal idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001TDO, ENCFF231INW, ENCFF268OOC, ENCFF476SFW 371737 ENCODE Processing Pipeline 8b9e6ee0dc3459ed79f4f84c71ed9dbc https://www.encodeproject.org/files/ENCFF034GYQ/@@download/ENCFF034GYQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF692OWD bigBed narrowPeak optimal idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF034GYQ 728513 ENCODE Processing Pipeline 3100a0a48d724e59f1b950b9820f4bce https://www.encodeproject.org/files/ENCFF692OWD/@@download/ENCFF692OWD.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF714LSY bigBed narrowPeak conservative idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF750YBJ 680925 ENCODE Processing Pipeline 9f541a2c23885bfc376f9c53d5f4715f https://www.encodeproject.org/files/ENCFF714LSY/@@download/ENCFF714LSY.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF476SFW bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF495IVB, ENCFF629IGF 6617588 ENCODE Processing Pipeline a940ff177e24989326b8ab5af6fd02b1 https://www.encodeproject.org/files/ENCFF476SFW/@@download/ENCFF476SFW.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF268OOC bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF495IVB, ENCFF565NDL, ENCFF629IGF 7127188 ENCODE Processing Pipeline ba4225c1de46cc7b9fb92ad047ada4bb https://www.encodeproject.org/files/ENCFF268OOC/@@download/ENCFF268OOC.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF831AGK bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF268OOC 13023938 ENCODE Processing Pipeline 62ceda57b7f87ecea1d45a6f5ff677c1 https://www.encodeproject.org/files/ENCFF831AGK/@@download/ENCFF831AGK.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF750YBJ bed narrowPeak conservative idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001TDO, ENCFF231INW, ENCFF268OOC, ENCFF476SFW 341787 ENCODE Processing Pipeline 4324c1c6e1719d22c34eea771335f2fd https://www.encodeproject.org/files/ENCFF750YBJ/@@download/ENCFF750YBJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF108WPX bigWig signal p-value ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF495IVB, ENCFF565NDL, ENCFF629IGF 589988846 ENCODE Processing Pipeline 90077b3407f540473ea0982665c6106f https://www.encodeproject.org/files/ENCFF108WPX/@@download/ENCFF108WPX.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF231INW bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF565NDL, ENCFF629IGF 6751217 ENCODE Processing Pipeline 331c8978718931671fddcfa12f3f9df0 https://www.encodeproject.org/files/ENCFF231INW/@@download/ENCFF231INW.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF684GZH bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF231INW 13208949 ENCODE Processing Pipeline fe2fa6fb885de401ef2c2080d6a96e10 https://www.encodeproject.org/files/ENCFF684GZH/@@download/ENCFF684GZH.bigBed hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF955BDG bam unfiltered alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 32 ENCFF000ZTJ, ENCFF643CGH 1074461475 ENCODE Processing Pipeline 2ba0610cdd7d79f1a5806f3f2b57c8df https://www.encodeproject.org/files/ENCFF955BDG/@@download/ENCFF955BDG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF504WES bam unfiltered alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 32 ENCFF000ZTO, ENCFF807MUK 2269427352 ENCODE Processing Pipeline 58aa975cce055c0f007e0797094c4613 https://www.encodeproject.org/files/ENCFF504WES/@@download/ENCFF504WES.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF499LYC bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF495IVB, ENCFF565NDL, ENCFF629IGF 7201829 ENCODE Processing Pipeline a1a7d2dbd4bbf4e3d8b32729bbb7e25e https://www.encodeproject.org/files/ENCFF499LYC/@@download/ENCFF499LYC.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF395ELT bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF495IVB, ENCFF629IGF 6754226 ENCODE Processing Pipeline 046e6d2f9ea822b4ffc71022bbdd8ba1 https://www.encodeproject.org/files/ENCFF395ELT/@@download/ENCFF395ELT.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF826EZB bigWig signal p-value ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF495IVB, ENCFF565NDL, ENCFF629IGF 591344125 ENCODE Processing Pipeline 25cda1a518f002cedcd7edce91fe3a00 https://www.encodeproject.org/files/ENCFF826EZB/@@download/ENCFF826EZB.bigWig hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF968LPR bigWig fold change over control ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF565NDL, ENCFF629IGF 677727709 ENCODE Processing Pipeline 8d72e83313be6a590a8251b72372e9cc https://www.encodeproject.org/files/ENCFF968LPR/@@download/ENCFF968LPR.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF184CVK bigWig signal p-value ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF565NDL, ENCFF629IGF 576226483 ENCODE Processing Pipeline f9d9e80f228add85936f909eec6e3e22 https://www.encodeproject.org/files/ENCFF184CVK/@@download/ENCFF184CVK.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF526BFL bigBed narrowPeak optimal idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF002DAB 918745 ENCODE Consortium 1b59d796505b42c09262e044d0c8a3a8 https://www.encodeproject.org/files/ENCFF526BFL/@@download/ENCFF526BFL.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF773FBC bigBed narrowPeak optimal idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001TDO, ENCFF034JLC 741561 ENCODE Processing Pipeline 3a3c7fbcb4a7b53455eae34a795d008f https://www.encodeproject.org/files/ENCFF773FBC/@@download/ENCFF773FBC.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF328BCQ bigWig fold change over control ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF495IVB, ENCFF565NDL, ENCFF629IGF 898205767 ENCODE Processing Pipeline 97f033f47b320e8b3698e25ffd0ecc0f https://www.encodeproject.org/files/ENCFF328BCQ/@@download/ENCFF328BCQ.bigWig hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF000ZTE bigWig signal ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF000ZTD, ENCFF000ZTF 485058845 Peggy Farnham, USC 425e24aecf05263876f237d193036a10 https://www.encodeproject.org/files/ENCFF000ZTE/@@download/ENCFF000ZTE.bigWig hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF565NDL bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 32 ENCFF000ZTO, ENCFF807MUK 1309108358 ENCODE Processing Pipeline 4cc269f1b5546ad51c86f736395f8d76 https://www.encodeproject.org/files/ENCFF565NDL/@@download/ENCFF565NDL.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF334PBY bed narrowPeak conservative idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001TDO, ENCFF395ELT, ENCFF499LYC, ENCFF631KGG 341534 ENCODE Processing Pipeline 1845b41acc0fdfb7a691188b1b107d38 https://www.encodeproject.org/files/ENCFF334PBY/@@download/ENCFF334PBY.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF034JLC bed narrowPeak optimal idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001TDO, ENCFF395ELT, ENCFF499LYC, ENCFF631KGG 381178 ENCODE Processing Pipeline e2986ba530a02c08b8a4ee7f1adf7415 https://www.encodeproject.org/files/ENCFF034JLC/@@download/ENCFF034JLC.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF002DAB bed narrowPeak optimal idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF000ZTD, ENCFF000ZTF 359152 ENCODE Consortium Analysis Working Group 43eb6e30af14c587f54ac14230074fb6 https://www.encodeproject.org/files/ENCFF002DAB/@@download/ENCFF002DAB.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF378AZV bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF499LYC 13012866 ENCODE Processing Pipeline 676abed9c02f77c9c4db401026035cf5 https://www.encodeproject.org/files/ENCFF378AZV/@@download/ENCFF378AZV.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF355DKB bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF395ELT 13010308 ENCODE Processing Pipeline 7791c0cd787d836ff8b7695fae04cff2 https://www.encodeproject.org/files/ENCFF355DKB/@@download/ENCFF355DKB.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF000ZTC bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001VRF 1560984 Peggy Farnham, USC 290500ae1e6dddb526efb821c292ea9f https://www.encodeproject.org/files/ENCFF000ZTC/@@download/ENCFF000ZTC.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF495IVB bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 32 ENCFF000ZTJ, ENCFF807MUK 662003363 ENCODE Processing Pipeline 9cf37d9df832484dbde58b41750f835e https://www.encodeproject.org/files/ENCFF495IVB/@@download/ENCFF495IVB.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF939YGI bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 32 ENCFF000ZTO, ENCFF643CGH 1258020146 ENCODE Processing Pipeline c8c9386d27b941ca2efe2ed04db2d2df https://www.encodeproject.org/files/ENCFF939YGI/@@download/ENCFF939YGI.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF000ZTD bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF000ZTJ 560769437 Peggy Farnham, USC c97ad4c078935f0fccf3aa104da2a9cf https://www.encodeproject.org/files/ENCFF000ZTD/@@download/ENCFF000ZTD.bam hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF000ZTF bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF000ZTO 855527688 Peggy Farnham, USC 7b84c2db8fa7b04130a043f3be640a77 https://www.encodeproject.org/files/ENCFF000ZTF/@@download/ENCFF000ZTF.bam hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF358OUL bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 32 ENCFF000ZTJ, ENCFF643CGH 661482534 ENCODE Processing Pipeline 62c851027b443f091c1bed857a17198d https://www.encodeproject.org/files/ENCFF358OUL/@@download/ENCFF358OUL.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF133BYM bam unfiltered alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 32 ENCFF000ZTJ, ENCFF807MUK 1070372393 ENCODE Processing Pipeline 05b75eace5dce4d8327029831594da64 https://www.encodeproject.org/files/ENCFF133BYM/@@download/ENCFF133BYM.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF840IZH bam unfiltered alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 32 ENCFF000ZTO, ENCFF643CGH 2191970426 ENCODE Processing Pipeline b94711347be653cc89b71ec1fc92817c https://www.encodeproject.org/files/ENCFF840IZH/@@download/ENCFF840IZH.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF001VRF bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF000ZTD, ENCFF000ZTF 729737 Peggy Farnham, USC a08112bcfe8f6a6e9494011ea5932cba https://www.encodeproject.org/files/ENCFF001VRF/@@download/ENCFF001VRF.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF631KGG bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF565NDL, ENCFF629IGF 6882991 ENCODE Processing Pipeline 21938f7f59af7bd557b0d9db5a80ac3a https://www.encodeproject.org/files/ENCFF631KGG/@@download/ENCFF631KGG.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF337HXE bigBed narrowPeak conservative idr thresholded peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1, 2 ENCFF001TDO, ENCFF334PBY 679360 ENCODE Processing Pipeline 6567abd9cf48f80939ea1de4c9606683 https://www.encodeproject.org/files/ENCFF337HXE/@@download/ENCFF337HXE.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF696RRP bigBed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF631KGG 13211951 ENCODE Processing Pipeline c084daa267266111297d9b7bf1f55258 https://www.encodeproject.org/files/ENCFF696RRP/@@download/ENCFF696RRP.bigBed hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF143ZUJ bigWig fold change over control ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF495IVB, ENCFF629IGF 475577203 ENCODE Processing Pipeline bd1123ec7de8a956d5001e1122a78452 https://www.encodeproject.org/files/ENCFF143ZUJ/@@download/ENCFF143ZUJ.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF132JBE bigWig signal p-value ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF495IVB, ENCFF629IGF 453733307 ENCODE Processing Pipeline 9c70150184a83089c5f512ac3d9fc57a https://www.encodeproject.org/files/ENCFF132JBE/@@download/ENCFF132JBE.bigWig hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF000ZTJ fastq reads ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 1 32 single-ended 878638868 Peggy Farnham, USC 69fd889b0d919fdb505ac983778ddf1a https://www.encodeproject.org/files/ENCFF000ZTJ/@@download/ENCFF000ZTJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VLG/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF000ZTO fastq reads ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 1 32 single-ended 1900790641 Peggy Farnham, USC ce0ef1b939c71ebeade57111b1ee5d7c https://www.encodeproject.org/files/ENCFF000ZTO/@@download/ENCFF000ZTO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VLG/ released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF581WJA fastq reads ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF016QKU 1973361753 Richard Myers, HAIB 84a732f39946b72b2f7ffc5a9eaf3511 SRA:SRR6214207 https://www.encodeproject.org/files/ENCFF581WJA/@@download/ENCFF581WJA.fastq.gz Illumina HiSeq 2000 /files/ENCFF092KOU/ released antibody characterized with exemption missing control alignments ENCFF016QKU fastq reads ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF581WJA 2023838562 Richard Myers, HAIB 36a7356f678930319e13cf9bc67badaa SRA:SRR6214207 https://www.encodeproject.org/files/ENCFF016QKU/@@download/ENCFF016QKU.fastq.gz Illumina HiSeq 2000 /files/ENCFF553BIW/ released antibody characterized with exemption missing control alignments ENCFF238MXX bam unfiltered alignments ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF016QKU, ENCFF581WJA, ENCFF643CGH 4860957473 ENCODE Processing Pipeline 036963841c2e40d0f93628dc88b9da09 https://www.encodeproject.org/files/ENCFF238MXX/@@download/ENCFF238MXX.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF582TXQ bam unfiltered alignments ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF016QKU, ENCFF581WJA, ENCFF807MUK 4841412306 ENCODE Processing Pipeline 0c391974a9002a733a5c8b4664a47db2 https://www.encodeproject.org/files/ENCFF582TXQ/@@download/ENCFF582TXQ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF223YMP bam alignments ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF016QKU, ENCFF581WJA, ENCFF643CGH 3662371255 ENCODE Processing Pipeline 37cab36a82bf96d39226b8405f7d412c https://www.encodeproject.org/files/ENCFF223YMP/@@download/ENCFF223YMP.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF534JTX bam alignments ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF016QKU, ENCFF581WJA, ENCFF807MUK 3658735673 ENCODE Processing Pipeline 65f40988757c82c4416f6d148e4453a9 https://www.encodeproject.org/files/ENCFF534JTX/@@download/ENCFF534JTX.bam hg19 released antibody characterized with exemption missing control alignments ENCFF825IFJ bigWig signal p-value ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF223YMP 1296661095 ENCODE Processing Pipeline e0c9203095b110c8f7e6d578e09b32a4 https://www.encodeproject.org/files/ENCFF825IFJ/@@download/ENCFF825IFJ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF366KBC bigWig fold change over control ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF223YMP 1248820989 ENCODE Processing Pipeline 72fe469abf282fac06233a6cbcaeb3f4 https://www.encodeproject.org/files/ENCFF366KBC/@@download/ENCFF366KBC.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF580NSJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF296GAR, ENCFF419RSJ 27249 ENCODE Processing Pipeline 570e615629d98fe49614fa01f6e79b4b https://www.encodeproject.org/files/ENCFF580NSJ/@@download/ENCFF580NSJ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF621JVM bigBed narrowPeak peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF296GAR 12068365 ENCODE Processing Pipeline 8f32bd9d039edf55b9baf32645d09825 https://www.encodeproject.org/files/ENCFF621JVM/@@download/ENCFF621JVM.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF899PRI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF580NSJ 109107 ENCODE Processing Pipeline 28d70c098c7bbe1f8e77d8a098047576 https://www.encodeproject.org/files/ENCFF899PRI/@@download/ENCFF899PRI.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF296GAR bed narrowPeak peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF223YMP 5366617 ENCODE Processing Pipeline 8de03070daf145cc75a75572085c58cc https://www.encodeproject.org/files/ENCFF296GAR/@@download/ENCFF296GAR.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF563SXN bigWig signal p-value ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF534JTX 1227267130 ENCODE Processing Pipeline 319590c201ef43db3fcbc0947180ee91 https://www.encodeproject.org/files/ENCFF563SXN/@@download/ENCFF563SXN.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF280ASJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF830XLX 107197 ENCODE Processing Pipeline 06a6b09ac4d00ab2ae937d58fd526377 https://www.encodeproject.org/files/ENCFF280ASJ/@@download/ENCFF280ASJ.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF477EJA bed narrowPeak peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF534JTX 5364675 ENCODE Processing Pipeline 160bcee42e6ba15647b39857e8fdb60c https://www.encodeproject.org/files/ENCFF477EJA/@@download/ENCFF477EJA.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF519TQG bigWig fold change over control ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF534JTX 1246279987 ENCODE Processing Pipeline db208250ca88e9b470033b9337ec05f5 https://www.encodeproject.org/files/ENCFF519TQG/@@download/ENCFF519TQG.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF830XLX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF477EJA 27034 ENCODE Processing Pipeline c14d8cbdff517f26478f529b3a4b2607 https://www.encodeproject.org/files/ENCFF830XLX/@@download/ENCFF830XLX.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF542XWB bigBed narrowPeak peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF477EJA 12047616 ENCODE Processing Pipeline 1834857eb6ba60d3e7b9d30eeffbbabc https://www.encodeproject.org/files/ENCFF542XWB/@@download/ENCFF542XWB.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF094UFQ fastq reads ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF120IAI 2935138422 Richard Myers, HAIB 615c61f2d54f7280449e71507142bcc4 SRA:SRR6214367 https://www.encodeproject.org/files/ENCFF094UFQ/@@download/ENCFF094UFQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF942ZHL/ released antibody characterized with exemption missing control alignments ENCFF120IAI fastq reads ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF094UFQ 2862563179 Richard Myers, HAIB 4b71055519a9890c5be192a8f82aafef SRA:SRR6214367 https://www.encodeproject.org/files/ENCFF120IAI/@@download/ENCFF120IAI.fastq.gz Illumina HiSeq 2000 /files/ENCFF043BUS/ released antibody characterized with exemption missing control alignments ENCFF157OFR bam unfiltered alignments ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF094UFQ, ENCFF120IAI, ENCFF643CGH 6942603522 ENCODE Processing Pipeline 853a4a585b0fd0b07009ca7efc1413c4 https://www.encodeproject.org/files/ENCFF157OFR/@@download/ENCFF157OFR.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF216CSN bam unfiltered alignments ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF094UFQ, ENCFF120IAI, ENCFF807MUK 6907872897 ENCODE Processing Pipeline 2dc26d0cc6221868aca6560a9c1cd902 https://www.encodeproject.org/files/ENCFF216CSN/@@download/ENCFF216CSN.bam hg19 released antibody characterized with exemption missing control alignments ENCFF198YBT bam alignments ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF094UFQ, ENCFF120IAI, ENCFF643CGH 5376078401 ENCODE Processing Pipeline 86d4a250141e1bfb2d3d6372bc644a02 https://www.encodeproject.org/files/ENCFF198YBT/@@download/ENCFF198YBT.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF012SRD bam alignments ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF094UFQ, ENCFF120IAI, ENCFF807MUK 5369163674 ENCODE Processing Pipeline 6933ba0c577230328430a95145f3f347 https://www.encodeproject.org/files/ENCFF012SRD/@@download/ENCFF012SRD.bam hg19 released antibody characterized with exemption missing control alignments ENCFF844FTL bigWig signal p-value ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF012SRD 1666013359 ENCODE Processing Pipeline 68e73caafce283db154d2fc907af7a05 https://www.encodeproject.org/files/ENCFF844FTL/@@download/ENCFF844FTL.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF590CTW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF060OVF 56002 ENCODE Processing Pipeline 458b178b18b0280ab9ead1d37d0b6cde https://www.encodeproject.org/files/ENCFF590CTW/@@download/ENCFF590CTW.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF412GSO bigWig fold change over control ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF012SRD 1747578480 ENCODE Processing Pipeline 4356e89c1d0a766adcf1a0255ffed32e https://www.encodeproject.org/files/ENCFF412GSO/@@download/ENCFF412GSO.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF060OVF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF073TAO 1004 ENCODE Processing Pipeline 666bc9286215cb4e255245428868a477 https://www.encodeproject.org/files/ENCFF060OVF/@@download/ENCFF060OVF.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF073TAO bed narrowPeak peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF012SRD 5908314 ENCODE Processing Pipeline 9f48faafd5fc62fa7eb8cb62d40b4acb https://www.encodeproject.org/files/ENCFF073TAO/@@download/ENCFF073TAO.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF320PPP bigBed narrowPeak peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF073TAO 11944762 ENCODE Processing Pipeline ef17a6d2478fc31257668c1f0537940d https://www.encodeproject.org/files/ENCFF320PPP/@@download/ENCFF320PPP.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF347PIT bigWig fold change over control ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF198YBT 1751608944 ENCODE Processing Pipeline 03154e4a251d73431eeb4f037d5c3c60 https://www.encodeproject.org/files/ENCFF347PIT/@@download/ENCFF347PIT.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF116PSC bed narrowPeak peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF198YBT 5915013 ENCODE Processing Pipeline d08c5faf3c2bbc90290fabfb46faa8e4 https://www.encodeproject.org/files/ENCFF116PSC/@@download/ENCFF116PSC.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF629KEI bigWig signal p-value ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF198YBT 1663240319 ENCODE Processing Pipeline a8a829b716dfa2cded5efdd4c2f5022e https://www.encodeproject.org/files/ENCFF629KEI/@@download/ENCFF629KEI.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF454DZP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116PSC, ENCFF419RSJ 1279 ENCODE Processing Pipeline dfea2bb813ca3658e0e36bc719fc8afa https://www.encodeproject.org/files/ENCFF454DZP/@@download/ENCFF454DZP.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF245VDD bigBed narrowPeak peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116PSC 11967764 ENCODE Processing Pipeline b7ebd737f57fa881e83cfbf6d3d580e0 https://www.encodeproject.org/files/ENCFF245VDD/@@download/ENCFF245VDD.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF361FWA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF454DZP 17694 ENCODE Processing Pipeline 972b94eaf0ebcec11bf3303fd9f0e415 https://www.encodeproject.org/files/ENCFF361FWA/@@download/ENCFF361FWA.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF000RUK bam alignments ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RUR 283418979 Vishwanath Iyer, UTA d18a64ffdb81931877c11a0020670ee9 https://www.encodeproject.org/files/ENCFF000RUK/@@download/ENCFF000RUK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUL bam alignments ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RUT 326505549 Vishwanath Iyer, UTA 1297a5ffc620f1c90726ca6fffa8b0c1 https://www.encodeproject.org/files/ENCFF000RUL/@@download/ENCFF000RUL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUM bigWig base overlap signal ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 156069092 Vishwanath Iyer, UTA 671bc68d811082fe82c6dfd433cf6154 https://www.encodeproject.org/files/ENCFF000RUM/@@download/ENCFF000RUM.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000RUN bam alignments ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF000RUY 366776531 Vishwanath Iyer, UTA 302e27359693d38d8ffdb3d6e5657381 https://www.encodeproject.org/files/ENCFF000RUN/@@download/ENCFF000RUN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUO bigBed narrowPeak peaks ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTA 5617423 Vishwanath Iyer, UTA 4fb2d12dbc72765fb9ecd618673d7ba8 https://www.encodeproject.org/files/ENCFF000RUO/@@download/ENCFF000RUO.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUQ bigWig signal ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1796727412 Vishwanath Iyer, UTA 95bc2e50be5484c40556f4ec6172a27d https://www.encodeproject.org/files/ENCFF000RUQ/@@download/ENCFF000RUQ.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000RUR fastq reads ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 612833599 Vishwanath Iyer, UTA 603257a462a1010ba9d09d0266cc07b8 https://www.encodeproject.org/files/ENCFF000RUR/@@download/ENCFF000RUR.fastq.gz Illumina Genome Analyzer /files/ENCFF000RUP/ released biological replicates with identical biosample insufficient read length ENCFF000RUS tar validation ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 25353282 Vishwanath Iyer, UTA 7ccb555ae66fce8818d8657a10815b0e https://www.encodeproject.org/files/ENCFF000RUS/@@download/ENCFF000RUS.tar.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000RUT fastq reads ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 354408076 Vishwanath Iyer, UTA 355ea63de92cdab471b34b8da210a266 https://www.encodeproject.org/files/ENCFF000RUT/@@download/ENCFF000RUT.fastq.gz Illumina Genome Analyzer /files/ENCFF000RUP/ released biological replicates with identical biosample insufficient read length ENCFF000RUY fastq reads ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 3 1 35 single-ended 416793131 Vishwanath Iyer, UTA 20e856e8da4099c3ff8960322fe386b8 https://www.encodeproject.org/files/ENCFF000RUY/@@download/ENCFF000RUY.fastq.gz Illumina Genome Analyzer /files/ENCFF000RUP/ released biological replicates with identical biosample insufficient read length ENCFF001UTA bed narrowPeak peaks ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 3815959 Vishwanath Iyer, UTA 405b4330b21e58252dfa43bb6f4f244d https://www.encodeproject.org/files/ENCFF001UTA/@@download/ENCFF001UTA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002DAY bed narrowPeak optimal idr thresholded peaks ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 297297 ENCODE Consortium Analysis Working Group 3deff97587dc49a10018a337bc0b0b19 https://www.encodeproject.org/files/ENCFF002DAY/@@download/ENCFF002DAY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF608TZI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAY 722474 ENCODE Consortium 5068348a7b90dac74ec1e891c40cd36f https://www.encodeproject.org/files/ENCFF608TZI/@@download/ENCFF608TZI.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF725BGJ fastq reads ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF125ONW 5199255206 Michael Snyder, Stanford 41c2fb13cd72a3b0d88f472ca37b2ffb SRA:SRR6213550 https://www.encodeproject.org/files/ENCFF725BGJ/@@download/ENCFF725BGJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF650PTL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF125ONW fastq reads ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF725BGJ 5398854466 Michael Snyder, Stanford f87d9d6b3d20edf81a37ace6fcd23db2 SRA:SRR6213550 https://www.encodeproject.org/files/ENCFF125ONW/@@download/ENCFF125ONW.fastq.gz Illumina HiSeq 4000 /files/ENCFF050RJA/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF623QDU bam unfiltered alignments ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF125ONW, ENCFF725BGJ, ENCFF807MUK 9242886625 ENCODE Processing Pipeline c05d6efc459de0dc9727a816f51b500e https://www.encodeproject.org/files/ENCFF623QDU/@@download/ENCFF623QDU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF259DRG bam alignments ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF125ONW, ENCFF725BGJ, ENCFF807MUK 5801177544 ENCODE Processing Pipeline 290519ac9ddf2083a656e1e0e3c5964b https://www.encodeproject.org/files/ENCFF259DRG/@@download/ENCFF259DRG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF675UXC bam unfiltered alignments ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF125ONW, ENCFF643CGH, ENCFF725BGJ 9244204846 ENCODE Processing Pipeline fe992068d6058bc03f62e2fdabfb2278 https://www.encodeproject.org/files/ENCFF675UXC/@@download/ENCFF675UXC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF693ANZ bam alignments ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF125ONW, ENCFF643CGH, ENCFF725BGJ 5810741949 ENCODE Processing Pipeline 8d3b49801e72d3b698a502871b16cd78 https://www.encodeproject.org/files/ENCFF693ANZ/@@download/ENCFF693ANZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF682TTM bigWig signal p-value ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF259DRG, ENCFF837NJP 1720283216 ENCODE Processing Pipeline c8c625d7bb0d305e0455566436011c46 https://www.encodeproject.org/files/ENCFF682TTM/@@download/ENCFF682TTM.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF245JXB bed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF259DRG, ENCFF837NJP 7170562 ENCODE Processing Pipeline a44cb707f8b90ef0f032ad67b19427dd https://www.encodeproject.org/files/ENCFF245JXB/@@download/ENCFF245JXB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF215GGE bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF245JXB 807987 ENCODE Processing Pipeline 06122543cfa22e6b6427b66949f470f2 https://www.encodeproject.org/files/ENCFF215GGE/@@download/ENCFF215GGE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF978NVC bigWig fold change over control ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF259DRG, ENCFF837NJP 1967912267 ENCODE Processing Pipeline 275a66017e32fbb44d024da0b14ebd8b https://www.encodeproject.org/files/ENCFF978NVC/@@download/ENCFF978NVC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF772TUY bigBed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF245JXB 13751520 ENCODE Processing Pipeline b43552915149f1a2a7a70acfbd11c685 https://www.encodeproject.org/files/ENCFF772TUY/@@download/ENCFF772TUY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF535RTO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF215GGE 1639078 ENCODE Processing Pipeline 000af31ea4ae8f15130f0796b954a70e https://www.encodeproject.org/files/ENCFF535RTO/@@download/ENCFF535RTO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF776SFB bigWig signal p-value ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF626LKC, ENCFF693ANZ 1865810817 ENCODE Processing Pipeline d3b6a10886f464975f5da9230dce7dab https://www.encodeproject.org/files/ENCFF776SFB/@@download/ENCFF776SFB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF387UCW bigBed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF411KGD 13757274 ENCODE Processing Pipeline bf98315243cef6652639f9486e5a9295 https://www.encodeproject.org/files/ENCFF387UCW/@@download/ENCFF387UCW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF952XPH bigWig fold change over control ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF626LKC, ENCFF693ANZ 1964439166 ENCODE Processing Pipeline 866bd5735e0bf99c335ebfe8f9983a17 https://www.encodeproject.org/files/ENCFF952XPH/@@download/ENCFF952XPH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF411KGD bed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF626LKC, ENCFF693ANZ 7174687 ENCODE Processing Pipeline 168d0ffe9709a443c30286b0b7c045e7 https://www.encodeproject.org/files/ENCFF411KGD/@@download/ENCFF411KGD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF557QYI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF574FIL 1640422 ENCODE Processing Pipeline 837e24feeaaaf3f50735a0e910b4ee65 https://www.encodeproject.org/files/ENCFF557QYI/@@download/ENCFF557QYI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF574FIL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF411KGD, ENCFF419RSJ 807722 ENCODE Processing Pipeline 8371b117d5252bb3767d2f28a355ac8f https://www.encodeproject.org/files/ENCFF574FIL/@@download/ENCFF574FIL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000PZZ bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QAL 765319059 Richard Myers, HAIB ddbd54812e5794dd62ef758618e09655 https://www.encodeproject.org/files/ENCFF000PZZ/@@download/ENCFF000PZZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QAA bigBed broadPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJX 254343 Richard Myers, HAIB 1cc8f51d4a8523fe7081203f0e901ee0 https://www.encodeproject.org/files/ENCFF000QAA/@@download/ENCFF000QAA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QAB bigBed broadPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJY 226367 Richard Myers, HAIB 172d412d09e5e88ea05bb67090d76a88 https://www.encodeproject.org/files/ENCFF000QAB/@@download/ENCFF000QAB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QAC bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QAN 933796196 Richard Myers, HAIB 208677645a984da9a2786a5047116511 https://www.encodeproject.org/files/ENCFF000QAC/@@download/ENCFF000QAC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QAE bigWig raw signal ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 13856974 Richard Myers, HAIB c3f1ec2ea509ea10a26ace4aa4aa5326 https://www.encodeproject.org/files/ENCFF000QAE/@@download/ENCFF000QAE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QAF bigWig raw signal ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 16661535 Richard Myers, HAIB 16cf0813795ad87258524073682a6c95 https://www.encodeproject.org/files/ENCFF000QAF/@@download/ENCFF000QAF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QAL fastq reads ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 789376608 Richard Myers, HAIB 2448e426990efd4fe723bbd0c6f02a0a https://www.encodeproject.org/files/ENCFF000QAL/@@download/ENCFF000QAL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QAN fastq reads ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 883394294 Richard Myers, HAIB 77acbd427d49930a5c9e77fa6e0c16d2 https://www.encodeproject.org/files/ENCFF000QAN/@@download/ENCFF000QAN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001UJX bed broadPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 1 142787 Richard Myers, HAIB 50ce1e7b3fd0ea77c64d6b39ab4a5436 https://www.encodeproject.org/files/ENCFF001UJX/@@download/ENCFF001UJX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJY bed broadPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 1 108358 Richard Myers, HAIB 3cdcf7db6de37033de07a16ab10b5f3b https://www.encodeproject.org/files/ENCFF001UJY/@@download/ENCFF001UJY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF002CLY bed narrowPeak optimal idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 224220 ENCODE Consortium Analysis Working Group 542fee5cc2b0c4d57b8021a3254e21f6 https://www.encodeproject.org/files/ENCFF002CLY/@@download/ENCFF002CLY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF478IQC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLY 482965 ENCODE Consortium b84359348997a144666fa8a2ea38ec9e https://www.encodeproject.org/files/ENCFF478IQC/@@download/ENCFF478IQC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF805FJI bam unfiltered alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAN, ENCFF643CGH 1121167385 ENCODE Processing Pipeline 8699417a2c9f8f70b3658eec61eacf8d https://www.encodeproject.org/files/ENCFF805FJI/@@download/ENCFF805FJI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF492NUF bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAN, ENCFF643CGH 509906295 ENCODE Processing Pipeline 7655c43c866a6fe655cb897434d78fca https://www.encodeproject.org/files/ENCFF492NUF/@@download/ENCFF492NUF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF658FMT bam unfiltered alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAL, ENCFF643CGH 997483250 ENCODE Processing Pipeline 389a119ecd82e34c7eb68a624a4ae74a https://www.encodeproject.org/files/ENCFF658FMT/@@download/ENCFF658FMT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF561ILM bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAL, ENCFF643CGH 425489056 ENCODE Processing Pipeline 45ef8500ed3bd5cfd374344dd5a33457 https://www.encodeproject.org/files/ENCFF561ILM/@@download/ENCFF561ILM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF788KZO bam unfiltered alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAL, ENCFF807MUK 995805098 ENCODE Processing Pipeline 3228dd9ebd28433c645623b25995f74a https://www.encodeproject.org/files/ENCFF788KZO/@@download/ENCFF788KZO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF757JWB bam unfiltered alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAN, ENCFF807MUK 1117129368 ENCODE Processing Pipeline 499e43658c65d3078c60d2389e0197ed https://www.encodeproject.org/files/ENCFF757JWB/@@download/ENCFF757JWB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF846HET bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAL, ENCFF807MUK 425775732 ENCODE Processing Pipeline b4f46eb04e7a9c6d84feca0d2c80b88f https://www.encodeproject.org/files/ENCFF846HET/@@download/ENCFF846HET.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF670JGI bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAN, ENCFF807MUK 510329046 ENCODE Processing Pipeline c87cb41a41094e133dd0b0b1003606e2 https://www.encodeproject.org/files/ENCFF670JGI/@@download/ENCFF670JGI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF818UTO bigWig signal p-value ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF561ILM, ENCFF772PJM 212540029 ENCODE Processing Pipeline 49eff6cf6e3dd3ee537ed422d5bf5071 https://www.encodeproject.org/files/ENCFF818UTO/@@download/ENCFF818UTO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF957ZYR bigWig signal p-value ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492NUF, ENCFF772PJM 213449561 ENCODE Processing Pipeline c140f71d42e8e336afc21d48b84641e8 https://www.encodeproject.org/files/ENCFF957ZYR/@@download/ENCFF957ZYR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF115YDK bigWig fold change over control ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF561ILM, ENCFF772PJM 178031545 ENCODE Processing Pipeline 52431defaac31a23241606672efb395b https://www.encodeproject.org/files/ENCFF115YDK/@@download/ENCFF115YDK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF922VNF bigWig signal p-value ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492NUF, ENCFF561ILM, ENCFF772PJM 205486527 ENCODE Processing Pipeline 72bc11fffce7e891152d7f78dcaf24de https://www.encodeproject.org/files/ENCFF922VNF/@@download/ENCFF922VNF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF656XBC bigWig fold change over control ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492NUF, ENCFF772PJM 208728098 ENCODE Processing Pipeline d71fa2db10ac6268153cfbceac43c3a2 https://www.encodeproject.org/files/ENCFF656XBC/@@download/ENCFF656XBC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF331ETG bigWig fold change over control ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492NUF, ENCFF561ILM, ENCFF772PJM 349867052 ENCODE Processing Pipeline a6ed471b6c016e713f3f15135b9b8535 https://www.encodeproject.org/files/ENCFF331ETG/@@download/ENCFF331ETG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF207LLP bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492NUF, ENCFF772PJM 494144 ENCODE Processing Pipeline c321c718396e5d2467e8c181b356c426 https://www.encodeproject.org/files/ENCFF207LLP/@@download/ENCFF207LLP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF794OXE bigBed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF352JPL 10430711 ENCODE Processing Pipeline 0c68e40cf9fb3ce97249955c9a352a73 https://www.encodeproject.org/files/ENCFF794OXE/@@download/ENCFF794OXE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF323IRR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF503LMD 222180 ENCODE Processing Pipeline 1f62c5cc2168b8e96c8fa66d355fd750 https://www.encodeproject.org/files/ENCFF323IRR/@@download/ENCFF323IRR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF352JPL bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492NUF, ENCFF561ILM, ENCFF772PJM 4491619 ENCODE Processing Pipeline 175287546de0fdd307d11f0842a13d9f https://www.encodeproject.org/files/ENCFF352JPL/@@download/ENCFF352JPL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF087MFG bed narrowPeak optimal idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF207LLP, ENCFF267ADF, ENCFF352JPL, ENCFF419RSJ 133901 ENCODE Processing Pipeline 275db6953ea2392131ba3492abb1019d https://www.encodeproject.org/files/ENCFF087MFG/@@download/ENCFF087MFG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF140HWC bigBed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF267ADF 9624527 ENCODE Processing Pipeline a85e266088b8e0a62bcc8842e48e0bdf https://www.encodeproject.org/files/ENCFF140HWC/@@download/ENCFF140HWC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF267ADF bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF561ILM, ENCFF772PJM 3912102 ENCODE Processing Pipeline 0f6f72bcf3c57674363b47f59e42154d https://www.encodeproject.org/files/ENCFF267ADF/@@download/ENCFF267ADF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF578CYI bigBed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF207LLP 1066596 ENCODE Processing Pipeline 714ac22445f1eecd4a9766a52df85d09 https://www.encodeproject.org/files/ENCFF578CYI/@@download/ENCFF578CYI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF503LMD bed narrowPeak conservative idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF207LLP, ENCFF267ADF, ENCFF352JPL, ENCFF419RSJ 102798 ENCODE Processing Pipeline 4add319a620d323eea8eab45d5b272e0 https://www.encodeproject.org/files/ENCFF503LMD/@@download/ENCFF503LMD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF050JOS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF087MFG 263599 ENCODE Processing Pipeline 5b4d98642d65dd0966f71003f6142a27 https://www.encodeproject.org/files/ENCFF050JOS/@@download/ENCFF050JOS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF536RHR bigWig signal p-value ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF670JGI, ENCFF750MIM, ENCFF846HET 205614447 ENCODE Processing Pipeline ebcfdbe96a720ecf221c23451f571698 https://www.encodeproject.org/files/ENCFF536RHR/@@download/ENCFF536RHR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF751TGF bigWig signal p-value ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670JGI, ENCFF750MIM 213592696 ENCODE Processing Pipeline 32f0ead7088a8436d81f1e9630c5ec4c https://www.encodeproject.org/files/ENCFF751TGF/@@download/ENCFF751TGF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF635IQW bigWig fold change over control ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF846HET 179012196 ENCODE Processing Pipeline 39304f5aede60313edd1ebd8fe72dd1c https://www.encodeproject.org/files/ENCFF635IQW/@@download/ENCFF635IQW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF109ULX bigWig fold change over control ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670JGI, ENCFF750MIM 208397484 ENCODE Processing Pipeline b188b2b165f29cff337b740f269a9a0e https://www.encodeproject.org/files/ENCFF109ULX/@@download/ENCFF109ULX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF863LSA bigWig signal p-value ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF846HET 212708760 ENCODE Processing Pipeline 2360bbb9e6c1b93dbbe02bf1caae518f https://www.encodeproject.org/files/ENCFF863LSA/@@download/ENCFF863LSA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF753OLX bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670JGI, ENCFF750MIM 504591 ENCODE Processing Pipeline 7f0fd0a4ec1a19ce2d1dd6be0e5887e2 https://www.encodeproject.org/files/ENCFF753OLX/@@download/ENCFF753OLX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF857ARL bigWig fold change over control ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF670JGI, ENCFF750MIM, ENCFF846HET 350802586 ENCODE Processing Pipeline 9fd1a8e85f4f282a51450ac3d7f467d0 https://www.encodeproject.org/files/ENCFF857ARL/@@download/ENCFF857ARL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF958LUI bigBed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF400JWL 9622037 ENCODE Processing Pipeline 7604c33cb459c5f95d6f2a6bf348656f https://www.encodeproject.org/files/ENCFF958LUI/@@download/ENCFF958LUI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF945FHB bigBed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF818IMH 10443363 ENCODE Processing Pipeline c6cb9919e38c021d88840435600764bc https://www.encodeproject.org/files/ENCFF945FHB/@@download/ENCFF945FHB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF636LOB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF961OPH 225468 ENCODE Processing Pipeline b67c634f9bf4308e2204325eeb4ffa8e https://www.encodeproject.org/files/ENCFF636LOB/@@download/ENCFF636LOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF961OPH bed narrowPeak conservative idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF400JWL, ENCFF753OLX, ENCFF818IMH 105132 ENCODE Processing Pipeline d1f05db2f652827863d240841fe7fd6b https://www.encodeproject.org/files/ENCFF961OPH/@@download/ENCFF961OPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF400JWL bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF846HET 3916390 ENCODE Processing Pipeline 486a998417a0cec22b14892410863eb3 https://www.encodeproject.org/files/ENCFF400JWL/@@download/ENCFF400JWL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF299FAQ bigBed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF753OLX 1079629 ENCODE Processing Pipeline 05028dc8f122b54acb4039688cc35abc https://www.encodeproject.org/files/ENCFF299FAQ/@@download/ENCFF299FAQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF251LXJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF473GCH 263391 ENCODE Processing Pipeline 49af179610ad96b5b10c3e778c24062e https://www.encodeproject.org/files/ENCFF251LXJ/@@download/ENCFF251LXJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF818IMH bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF670JGI, ENCFF750MIM, ENCFF846HET 4507280 ENCODE Processing Pipeline eaf45114be5e96aab788f4150ea060e7 https://www.encodeproject.org/files/ENCFF818IMH/@@download/ENCFF818IMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF473GCH bed narrowPeak optimal idr thresholded peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF400JWL, ENCFF753OLX, ENCFF818IMH 133495 ENCODE Processing Pipeline 86ddcb80bb8c5f873e909777fd5562ce https://www.encodeproject.org/files/ENCFF473GCH/@@download/ENCFF473GCH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000RVK bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RVR 368812135 Vishwanath Iyer, UTA 700ce1f6710422d57b69106ee0dd3203 https://www.encodeproject.org/files/ENCFF000RVK/@@download/ENCFF000RVK.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVL bigWig base overlap signal ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 126756664 Vishwanath Iyer, UTA d93b6d9a8f45fec2722b7077f4ebe844 https://www.encodeproject.org/files/ENCFF000RVL/@@download/ENCFF000RVL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVM bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RVW 534906729 Vishwanath Iyer, UTA 2106c8f9eeb67d68b6057d6c9e3f7187 https://www.encodeproject.org/files/ENCFF000RVM/@@download/ENCFF000RVM.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVN bigBed narrowPeak peaks ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTD 4482910 Vishwanath Iyer, UTA 54ec91b63b05c676b7fd01e880f12a21 https://www.encodeproject.org/files/ENCFF000RVN/@@download/ENCFF000RVN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVP bigWig signal ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1900382273 Vishwanath Iyer, UTA 62b70e1aee65e9e41e4717139f88343b https://www.encodeproject.org/files/ENCFF000RVP/@@download/ENCFF000RVP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVR fastq reads ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 401840500 Vishwanath Iyer, UTA c950e3248495e3952a5f5d9676d97ebe https://www.encodeproject.org/files/ENCFF000RVR/@@download/ENCFF000RVR.fastq.gz Illumina Genome Analyzer /files/ENCFF000RVO/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVW fastq reads ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 518664757 Vishwanath Iyer, UTA 2335dfc6e65ba78aac14af943101b0f2 https://www.encodeproject.org/files/ENCFF000RVW/@@download/ENCFF000RVW.fastq.gz Illumina Genome Analyzer /files/ENCFF000RVO/ released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF001UTD bed narrowPeak peaks ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2451496 Vishwanath Iyer, UTA b77f6a78edd00ce73c3c9d4bdee43cbc https://www.encodeproject.org/files/ENCFF001UTD/@@download/ENCFF001UTD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF002DBB bed narrowPeak optimal idr thresholded peaks ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 357266 ENCODE Consortium Analysis Working Group 52215da55c7d013c6905e23a364ec1f6 https://www.encodeproject.org/files/ENCFF002DBB/@@download/ENCFF002DBB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF518XDD bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBB 860001 ENCODE Consortium 6e054e6edf0718b0cc50f8e70d54fe0c https://www.encodeproject.org/files/ENCFF518XDD/@@download/ENCFF518XDD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF260SNF bam unfiltered alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RVW, ENCFF643CGH 652743782 ENCODE Processing Pipeline 1c4b0ecb23336adaf75afde8965469f1 https://www.encodeproject.org/files/ENCFF260SNF/@@download/ENCFF260SNF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF224CAJ bam unfiltered alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RVW, ENCFF807MUK 651879282 ENCODE Processing Pipeline bbc78c298dfba750bd8dab4b067df528 https://www.encodeproject.org/files/ENCFF224CAJ/@@download/ENCFF224CAJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF425DIJ bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RVR, ENCFF807MUK 144146085 ENCODE Processing Pipeline 51c8e2eec0e2660a760b563d80e98740 https://www.encodeproject.org/files/ENCFF425DIJ/@@download/ENCFF425DIJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF665LFS bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RVW, ENCFF643CGH 340871674 ENCODE Processing Pipeline 00a00871a40ae58f810a0f159a33f373 https://www.encodeproject.org/files/ENCFF665LFS/@@download/ENCFF665LFS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF820CYE bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RVR, ENCFF643CGH 144082851 ENCODE Processing Pipeline 27791b422ea3f0d0ed4501968618ac07 https://www.encodeproject.org/files/ENCFF820CYE/@@download/ENCFF820CYE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF612VJH bam unfiltered alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RVR, ENCFF643CGH 462474817 ENCODE Processing Pipeline 2c633df0fa4fd90d76790bc91315f83b https://www.encodeproject.org/files/ENCFF612VJH/@@download/ENCFF612VJH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF645QVI bam unfiltered alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RVR, ENCFF807MUK 462005907 ENCODE Processing Pipeline f8d97bc400aa13389d5ea93fe1b0bc2e https://www.encodeproject.org/files/ENCFF645QVI/@@download/ENCFF645QVI.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF029MNN bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RVW, ENCFF807MUK 340943541 ENCODE Processing Pipeline 212508648e4d18291f4ac99ad599d959 https://www.encodeproject.org/files/ENCFF029MNN/@@download/ENCFF029MNN.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000XRP bam alignments ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XRT 207141228 Michael Snyder, Stanford 5d293613c67c62e8f0cbfd81d478fd6c https://www.encodeproject.org/files/ENCFF000XRP/@@download/ENCFF000XRP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRQ bam alignments ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XSM 286626728 Michael Snyder, Stanford ba5f509d125b3cfce4552ceaf6ca86af https://www.encodeproject.org/files/ENCFF000XRQ/@@download/ENCFF000XRQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRR bigBed narrowPeak peaks ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKF 396843 Michael Snyder, Stanford 295807aa63ddf0c0e21f61b33b178451 https://www.encodeproject.org/files/ENCFF000XRR/@@download/ENCFF000XRR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRS bigWig signal ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 329119306 Michael Snyder, Stanford b30226a1912dbd854b14b10cdad91bef https://www.encodeproject.org/files/ENCFF000XRS/@@download/ENCFF000XRS.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XRT fastq reads ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 154072499 Michael Snyder, Stanford 484e7a8750418eb147b71c7890f17eb1 https://www.encodeproject.org/files/ENCFF000XRT/@@download/ENCFF000XRT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF000XSM fastq reads ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 219152725 Michael Snyder, Stanford 0e64a2966f66527a6e9e9565e247984d https://www.encodeproject.org/files/ENCFF000XSM/@@download/ENCFF000XSM.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF001VKF bed narrowPeak peaks ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 147287 Michael Snyder, Stanford 7138927d357399bf83d8cd3c03b818fe https://www.encodeproject.org/files/ENCFF001VKF/@@download/ENCFF001VKF.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CUC bed narrowPeak optimal idr thresholded peaks ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 213158 ENCODE Consortium Analysis Working Group 006988cb6eb478daf34722128c086ab7 https://www.encodeproject.org/files/ENCFF002CUC/@@download/ENCFF002CUC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF290MDX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUC 417038 ENCODE Consortium b259d8a8d28f35c92c87de2b74d857a7 https://www.encodeproject.org/files/ENCFF290MDX/@@download/ENCFF290MDX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF638IWT fastq reads ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 1 ENCFF205WLT 2789472131 Michael Snyder, Stanford 799e0621c5c3613a6fdf2975f808c2d6 SRA:SRR6214371 https://www.encodeproject.org/files/ENCFF638IWT/@@download/ENCFF638IWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF676BSD fastq reads ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 1 ENCFF196AWV 3356698353 Michael Snyder, Stanford 8cd22408023a5c3053681da967af5b6e SRA:SRR6214372 https://www.encodeproject.org/files/ENCFF676BSD/@@download/ENCFF676BSD.fastq.gz Illumina HiSeq 2000 /files/ENCFF050IAV/, /files/ENCFF055BVM/, /files/ENCFF069TUA/, /files/ENCFF153HYB/, /files/ENCFF259QKU/, /files/ENCFF342YBR/, /files/ENCFF354EZU/, /files/ENCFF370DYU/, /files/ENCFF427XVX/, /files/ENCFF458QHC/, /files/ENCFF534SCD/, /files/ENCFF547QSE/, /files/ENCFF612YLD/, /files/ENCFF642NHF/, /files/ENCFF643OCI/, /files/ENCFF643PJM/, /files/ENCFF660NKL/, /files/ENCFF668LQF/, /files/ENCFF696OLX/, /files/ENCFF769KWF/, /files/ENCFF794JUL/, /files/ENCFF873ZZU/, /files/ENCFF878ZVK/, /files/ENCFF881MQW/ released missing genetic modification characterization missing control alignments ENCFF205WLT fastq reads ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 1 101 paired-ended 2 ENCFF638IWT 2799988656 Michael Snyder, Stanford b11efd7cb97ee79e3e06fe918211a5b8 SRA:SRR6214371 https://www.encodeproject.org/files/ENCFF205WLT/@@download/ENCFF205WLT.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF196AWV fastq reads ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 1 101 paired-ended 2 ENCFF676BSD 3372823706 Michael Snyder, Stanford 082b2acdbcc07a9d01ab2ea2f4add0a3 SRA:SRR6214372 https://www.encodeproject.org/files/ENCFF196AWV/@@download/ENCFF196AWV.fastq.gz Illumina HiSeq 2000 /files/ENCFF010LOC/, /files/ENCFF089HUB/, /files/ENCFF169WOT/, /files/ENCFF184SBV/, /files/ENCFF212MYS/, /files/ENCFF231MWC/, /files/ENCFF247VVB/, /files/ENCFF256KTI/, /files/ENCFF327UHP/, /files/ENCFF374JTH/, /files/ENCFF437BSD/, /files/ENCFF446ZHN/, /files/ENCFF485UTC/, /files/ENCFF502LCH/, /files/ENCFF570XLQ/, /files/ENCFF611URR/, /files/ENCFF674OUR/, /files/ENCFF696JSC/, /files/ENCFF793FGU/, /files/ENCFF804THN/, /files/ENCFF806BJB/, /files/ENCFF825GYY/, /files/ENCFF886JJC/, /files/ENCFF967IDB/ released missing genetic modification characterization missing control alignments ENCFF912ZDU bam unfiltered alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF196AWV, ENCFF676BSD, ENCFF807MUK 6775854285 ENCODE Processing Pipeline 2a0bf49af74adda1e9d173ed85d5c81c https://www.encodeproject.org/files/ENCFF912ZDU/@@download/ENCFF912ZDU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF101ZLH bam unfiltered alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF205WLT, ENCFF638IWT, ENCFF643CGH 5717588255 ENCODE Processing Pipeline 029a170acc76f7132bb6c6cdca958c59 https://www.encodeproject.org/files/ENCFF101ZLH/@@download/ENCFF101ZLH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF437JTR bam unfiltered alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF196AWV, ENCFF643CGH, ENCFF676BSD 6785857059 ENCODE Processing Pipeline 4cb1e53d01b74f55fdf36947b7564d80 https://www.encodeproject.org/files/ENCFF437JTR/@@download/ENCFF437JTR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF805DZS bam unfiltered alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF205WLT, ENCFF638IWT, ENCFF807MUK 5709091116 ENCODE Processing Pipeline c07932abe3062332ad030f4c5a3c3bb0 https://www.encodeproject.org/files/ENCFF805DZS/@@download/ENCFF805DZS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF373VAU bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF205WLT, ENCFF638IWT, ENCFF807MUK 5003144334 ENCODE Processing Pipeline a886c300376b196481e2978e77a2adb5 https://www.encodeproject.org/files/ENCFF373VAU/@@download/ENCFF373VAU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF443BJC bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF196AWV, ENCFF676BSD, ENCFF807MUK 5960980544 ENCODE Processing Pipeline b0d7f66fccb049dd8ead0cee41b5a660 https://www.encodeproject.org/files/ENCFF443BJC/@@download/ENCFF443BJC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF031RFG bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF205WLT, ENCFF638IWT, ENCFF643CGH 5003937494 ENCODE Processing Pipeline 3b920fabf853e4ad4634bafb1f66c935 https://www.encodeproject.org/files/ENCFF031RFG/@@download/ENCFF031RFG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF848TYC bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF196AWV, ENCFF643CGH, ENCFF676BSD 5962924931 ENCODE Processing Pipeline 6b1da8107abde20875aa62a373de6c46 https://www.encodeproject.org/files/ENCFF848TYC/@@download/ENCFF848TYC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF699FYP bigWig signal p-value ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF443BJC 1639322180 ENCODE Processing Pipeline e5ecb57996a9e2a7e6215cc3337751c1 https://www.encodeproject.org/files/ENCFF699FYP/@@download/ENCFF699FYP.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF221VMF bigWig fold change over control ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF848TYC 1617694396 ENCODE Processing Pipeline ec2a6252ff011139154e5553adf24720 https://www.encodeproject.org/files/ENCFF221VMF/@@download/ENCFF221VMF.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF311XSR bigWig signal p-value ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031RFG 1448549202 ENCODE Processing Pipeline 3b9eb32d43629e27efab9869f82b6b2c https://www.encodeproject.org/files/ENCFF311XSR/@@download/ENCFF311XSR.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF827ZOT bigWig signal p-value ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF848TYC 1422059799 ENCODE Processing Pipeline a323c0298f8d993e01a5d81ea742d9f5 https://www.encodeproject.org/files/ENCFF827ZOT/@@download/ENCFF827ZOT.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF180XNZ bigWig fold change over control ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF443BJC 1611516218 ENCODE Processing Pipeline 1a11198761d3c4407a1c3e912596102b https://www.encodeproject.org/files/ENCFF180XNZ/@@download/ENCFF180XNZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF264OKS bigWig signal p-value ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF373VAU 1242408660 ENCODE Processing Pipeline d6f6a44b2c46e94f0fbec621d22afc8c https://www.encodeproject.org/files/ENCFF264OKS/@@download/ENCFF264OKS.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF930EGJ bigWig signal p-value ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF031RFG, ENCFF848TYC 1986000621 ENCODE Processing Pipeline 81fa709b4b20262d8991f06b23e2e266 https://www.encodeproject.org/files/ENCFF930EGJ/@@download/ENCFF930EGJ.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF464CNC bigWig signal p-value ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF373VAU, ENCFF443BJC 1984434280 ENCODE Processing Pipeline 95d99aefc0bbf24a935cba7a74e2c54f https://www.encodeproject.org/files/ENCFF464CNC/@@download/ENCFF464CNC.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF206CVZ bigWig fold change over control ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF373VAU 1446549310 ENCODE Processing Pipeline bb8b7fcf985dcbca43419b8bc8a0e6b5 https://www.encodeproject.org/files/ENCFF206CVZ/@@download/ENCFF206CVZ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF794ABB bigWig fold change over control ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF031RFG, ENCFF848TYC 2090670270 ENCODE Processing Pipeline 3b6a7642e583029bdb99358955cd4a01 https://www.encodeproject.org/files/ENCFF794ABB/@@download/ENCFF794ABB.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF233HHJ bigWig fold change over control ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF373VAU, ENCFF443BJC 2090744499 ENCODE Processing Pipeline 2551944bb2cf23d4bd759b3ac9abc9a3 https://www.encodeproject.org/files/ENCFF233HHJ/@@download/ENCFF233HHJ.bigWig hg19 released missing genetic modification characterization missing control alignments ENCFF840UUG bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF443BJC 6705783 ENCODE Processing Pipeline a8767c075632ab9f7dafdadb240bc3c6 https://www.encodeproject.org/files/ENCFF840UUG/@@download/ENCFF840UUG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF199JSG bigWig fold change over control ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031RFG 1404483611 ENCODE Processing Pipeline df23057761099473864004172e6da2d8 https://www.encodeproject.org/files/ENCFF199JSG/@@download/ENCFF199JSG.bigWig GRCh38 released missing genetic modification characterization missing control alignments ENCFF967OWD bigBed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF421XJF 11192350 ENCODE Processing Pipeline 012f568506f0d98c33e37ee0233a5bdf https://www.encodeproject.org/files/ENCFF967OWD/@@download/ENCFF967OWD.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF580LRK bed narrowPeak optimal idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF752UXW, ENCFF760PUD, ENCFF871UBF 36907 ENCODE Processing Pipeline 618000ba8d63f6d53c51b23cd9cf042d https://www.encodeproject.org/files/ENCFF580LRK/@@download/ENCFF580LRK.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF760PUD bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF848TYC 6700680 ENCODE Processing Pipeline 70858668f772c1d8af676d0646603801 https://www.encodeproject.org/files/ENCFF760PUD/@@download/ENCFF760PUD.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF075KWO bigBed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF871UBF 11205449 ENCODE Processing Pipeline e6035e402723cdfcbce9561fc1b5fa6c https://www.encodeproject.org/files/ENCFF075KWO/@@download/ENCFF075KWO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF871UBF bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031RFG 6590811 ENCODE Processing Pipeline b49cf97b0197b536895354c40a9e2606 https://www.encodeproject.org/files/ENCFF871UBF/@@download/ENCFF871UBF.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF752UXW bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF031RFG, ENCFF848TYC 7174559 ENCODE Processing Pipeline 5ab688d2077adabb882a66c61a2acd21 https://www.encodeproject.org/files/ENCFF752UXW/@@download/ENCFF752UXW.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF212WKL bigBed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF760PUD 11125443 ENCODE Processing Pipeline 4cbf9c8ca47fe4fb10d684de7705dc9b https://www.encodeproject.org/files/ENCFF212WKL/@@download/ENCFF212WKL.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF421XJF bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF373VAU 6598220 ENCODE Processing Pipeline 6df0c539da65527f527ac44868a9cd3f https://www.encodeproject.org/files/ENCFF421XJF/@@download/ENCFF421XJF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF685MUU bigBed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF752UXW 11038740 ENCODE Processing Pipeline 44082fbde920edfc19b40b3cf75ca0e5 https://www.encodeproject.org/files/ENCFF685MUU/@@download/ENCFF685MUU.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF670LZW bigBed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF840UUG 11116503 ENCODE Processing Pipeline de98fb33d9b1261753c646fd8c178d74 https://www.encodeproject.org/files/ENCFF670LZW/@@download/ENCFF670LZW.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF193TEJ bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF373VAU, ENCFF443BJC 7156926 ENCODE Processing Pipeline 5ed609c42fb3fdbb37112520a2dc8c46 https://www.encodeproject.org/files/ENCFF193TEJ/@@download/ENCFF193TEJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF445JBO bigBed narrowPeak optimal idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF580LRK 111227 ENCODE Processing Pipeline a35415dc347214d138290d4b4d7ed974 https://www.encodeproject.org/files/ENCFF445JBO/@@download/ENCFF445JBO.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF694QDE bed narrowPeak conservative idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF752UXW, ENCFF760PUD, ENCFF871UBF 23145 ENCODE Processing Pipeline a4a5668a8a12e613d0a7242dd129e1b2 https://www.encodeproject.org/files/ENCFF694QDE/@@download/ENCFF694QDE.bed.gz GRCh38 released missing genetic modification characterization missing control alignments ENCFF412UKT bigBed narrowPeak conservative idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF694QDE 90981 ENCODE Processing Pipeline b3316899bcc7e043bf4eba787a2f2b36 https://www.encodeproject.org/files/ENCFF412UKT/@@download/ENCFF412UKT.bigBed GRCh38 released missing genetic modification characterization missing control alignments ENCFF294NNX bed narrowPeak optimal idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF193TEJ, ENCFF421XJF, ENCFF840UUG 37665 ENCODE Processing Pipeline 90946b29583266562505804ea51d9440 https://www.encodeproject.org/files/ENCFF294NNX/@@download/ENCFF294NNX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF968NZF bigBed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF193TEJ 11017267 ENCODE Processing Pipeline f4266d6ade1a5237fc426460cfed0ebe https://www.encodeproject.org/files/ENCFF968NZF/@@download/ENCFF968NZF.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF767UDU bed narrowPeak conservative idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF001TDO, ENCFF193TEJ, ENCFF421XJF, ENCFF840UUG 23493 ENCODE Processing Pipeline 0988c7d6dcfccbf200ade406f6f130cf https://www.encodeproject.org/files/ENCFF767UDU/@@download/ENCFF767UDU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF206SRT bigBed narrowPeak conservative idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF767UDU 90316 ENCODE Processing Pipeline 30a7ae32c95f34757581cf3014ce6fae https://www.encodeproject.org/files/ENCFF206SRT/@@download/ENCFF206SRT.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF402WOO bigBed narrowPeak optimal idr thresholded peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1, 2 ENCFF294NNX 111483 ENCODE Processing Pipeline f1f4fa6b54b852ea5217a114161ce21e https://www.encodeproject.org/files/ENCFF402WOO/@@download/ENCFF402WOO.bigBed hg19 released missing genetic modification characterization missing control alignments ENCFF000VSJ bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VSY 385582943 Michael Snyder, Stanford 6595b15c5349209aedbd5a59a7380e6b https://www.encodeproject.org/files/ENCFF000VSJ/@@download/ENCFF000VSJ.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VSK bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VTI 508399694 Michael Snyder, Stanford bc24d61ca296af463d3b62c2643607d5 https://www.encodeproject.org/files/ENCFF000VSK/@@download/ENCFF000VSK.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VSL bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VDX 610863 Michael Snyder, Stanford 1dbb5cd9707f9a3b08f2bc8a6232ac53 https://www.encodeproject.org/files/ENCFF000VSL/@@download/ENCFF000VSL.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VSN bigWig signal ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 357319827 Michael Snyder, Stanford 73005ece3ae813304f66c029cf64c865 https://www.encodeproject.org/files/ENCFF000VSN/@@download/ENCFF000VSN.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VSY fastq reads ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 691759421 Michael Snyder, Stanford 20fd11b8f14e303eb4161dba283220e4 https://www.encodeproject.org/files/ENCFF000VSY/@@download/ENCFF000VSY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VTI fastq reads ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 951985365 Michael Snyder, Stanford aa8a80cc516379b7856058ec0a2d4867 https://www.encodeproject.org/files/ENCFF000VTI/@@download/ENCFF000VTI.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF001VDX bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 281931 Michael Snyder, Stanford 67e3bdb471751bbd4a1de94f79a27f04 https://www.encodeproject.org/files/ENCFF001VDX/@@download/ENCFF001VDX.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF002COL bed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 14118 ENCODE Consortium Analysis Working Group 9244c35a76113602e7ca61ee915f9e18 https://www.encodeproject.org/files/ENCFF002COL/@@download/ENCFF002COL.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF302CKV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002COL 78014 ENCODE Consortium c00f33dcaf6798476223c97eadb02482 https://www.encodeproject.org/files/ENCFF302CKV/@@download/ENCFF302CKV.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF651OUX bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF643CGH 485978758 ENCODE Processing Pipeline 9fad95c0c1bbd990b106e06ad51ff33a https://www.encodeproject.org/files/ENCFF651OUX/@@download/ENCFF651OUX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF723BPZ bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF643CGH 786994925 ENCODE Processing Pipeline fb4343e5311c3833f5c3c8b5ee0b1256 https://www.encodeproject.org/files/ENCFF723BPZ/@@download/ENCFF723BPZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF290MTO bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF643CGH 1059091330 ENCODE Processing Pipeline b6e0c271726093d764bf3ca82a4f29c4 https://www.encodeproject.org/files/ENCFF290MTO/@@download/ENCFF290MTO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF365KGA bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF643CGH 643441791 ENCODE Processing Pipeline 4988025ba6653332b5bc4da3f599a12b https://www.encodeproject.org/files/ENCFF365KGA/@@download/ENCFF365KGA.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF408BUD bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF807MUK 783610095 ENCODE Processing Pipeline 3587b23b010739d163bc2cc241808ade https://www.encodeproject.org/files/ENCFF408BUD/@@download/ENCFF408BUD.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF080UUC bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF807MUK 485061569 ENCODE Processing Pipeline 54c5da4242922791f420f81568ae65c1 https://www.encodeproject.org/files/ENCFF080UUC/@@download/ENCFF080UUC.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF498LKK bam unfiltered alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF807MUK 1054239720 ENCODE Processing Pipeline 6acc06556a9c0a08811531fabd56c6c1 https://www.encodeproject.org/files/ENCFF498LKK/@@download/ENCFF498LKK.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF042ZNZ bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF807MUK 642945390 ENCODE Processing Pipeline a4e599b819cc5b96002ec94d76e5ba05 https://www.encodeproject.org/files/ENCFF042ZNZ/@@download/ENCFF042ZNZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF117YIC bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042ZNZ, ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 162185959 ENCODE Processing Pipeline 149b7df7c859a8fbe875501757c4d448 https://www.encodeproject.org/files/ENCFF117YIC/@@download/ENCFF117YIC.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF021GTN bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF093WNM 130159 ENCODE Processing Pipeline 686f49c624257e91261e7d1458f9aaa8 https://www.encodeproject.org/files/ENCFF021GTN/@@download/ENCFF021GTN.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF024JTY bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 245266579 ENCODE Processing Pipeline f965e3a2de5bf64d969c4b988f4ada2f https://www.encodeproject.org/files/ENCFF024JTY/@@download/ENCFF024JTY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF950MOS bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106CWI 9636122 ENCODE Processing Pipeline cfab212d6d8ea6f077bd1bf8cf6b78bb https://www.encodeproject.org/files/ENCFF950MOS/@@download/ENCFF950MOS.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF314JBH bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042ZNZ, ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 453073439 ENCODE Processing Pipeline b184eb757f597b05ca7ca27f41f1ae44 https://www.encodeproject.org/files/ENCFF314JBH/@@download/ENCFF314JBH.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF093WNM bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 35610 ENCODE Processing Pipeline a5a9f0712ebc4d0f98401a4fc751fbe4 https://www.encodeproject.org/files/ENCFF093WNM/@@download/ENCFF093WNM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF443VLF bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF042ZNZ, ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 4162002 ENCODE Processing Pipeline 98005e4e9e765f0631fea84f7e6b52e3 https://www.encodeproject.org/files/ENCFF443VLF/@@download/ENCFF443VLF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF686JJM bed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF093WNM, ENCFF106CWI, ENCFF443VLF 9816 ENCODE Processing Pipeline d0187eb5fbc839caa280c6395173d2ba https://www.encodeproject.org/files/ENCFF686JJM/@@download/ENCFF686JJM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF301RKI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF686JJM 51525 ENCODE Processing Pipeline 54f9de390924b22685dcf9c808d9ad16 https://www.encodeproject.org/files/ENCFF301RKI/@@download/ENCFF301RKI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF783CCD bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 72539538 ENCODE Processing Pipeline 37dabdf5e3f5af895e94399768702d8d https://www.encodeproject.org/files/ENCFF783CCD/@@download/ENCFF783CCD.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF106CWI bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 3586452 ENCODE Processing Pipeline aa427312a1b7c1de79edac49970f5ef1 https://www.encodeproject.org/files/ENCFF106CWI/@@download/ENCFF106CWI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF850EXY bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 195808141 ENCODE Processing Pipeline 01d29981aae830c373c5914d73c7ab98 https://www.encodeproject.org/files/ENCFF850EXY/@@download/ENCFF850EXY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF072KIM bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 219532324 ENCODE Processing Pipeline c4ea9503df47a04731d13af64bc50ac4 https://www.encodeproject.org/files/ENCFF072KIM/@@download/ENCFF072KIM.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF830ZRB bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF443VLF 10778572 ENCODE Processing Pipeline 66140074ac30c9bded7b53a90e6c6c20 https://www.encodeproject.org/files/ENCFF830ZRB/@@download/ENCFF830ZRB.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF082JDH bed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF093WNM, ENCFF106CWI, ENCFF443VLF 31791 ENCODE Processing Pipeline 10299328af6a1ef178cd4a17a91c4c3e https://www.encodeproject.org/files/ENCFF082JDH/@@download/ENCFF082JDH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF051VNY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF082JDH 110533 ENCODE Processing Pipeline ed428e8a7f6a68a4bf8a44a01a925e53 https://www.encodeproject.org/files/ENCFF051VNY/@@download/ENCFF051VNY.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF884PFA bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365KGA, ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 4161085 ENCODE Processing Pipeline 7922aeeb03c51b2794528188ea07b240 https://www.encodeproject.org/files/ENCFF884PFA/@@download/ENCFF884PFA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF003ZGU bed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF053BPC, ENCFF419RSJ, ENCFF881ANJ, ENCFF884PFA 10897 ENCODE Processing Pipeline 8b587751a7cb4a0b9dd8abfa05e19e3c https://www.encodeproject.org/files/ENCFF003ZGU/@@download/ENCFF003ZGU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF794VJN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF003ZGU 63540 ENCODE Processing Pipeline db8879d1828712559db1a186d6487c1b https://www.encodeproject.org/files/ENCFF794VJN/@@download/ENCFF794VJN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF616PWI bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF365KGA, ENCFF477ZKJ 72594380 ENCODE Processing Pipeline 6b407e0089b337e7970dde473b8281f3 https://www.encodeproject.org/files/ENCFF616PWI/@@download/ENCFF616PWI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF756UXD bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365KGA, ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 162216784 ENCODE Processing Pipeline 4239c6497dfe0e8f9b3204ef9ec90e7c https://www.encodeproject.org/files/ENCFF756UXD/@@download/ENCFF756UXD.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF983EKB bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF365KGA, ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 458504621 ENCODE Processing Pipeline 536868a0c72ccdcb11f3fd1d9968a4dc https://www.encodeproject.org/files/ENCFF983EKB/@@download/ENCFF983EKB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF053BPC bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF365KGA, ENCFF477ZKJ 3555921 ENCODE Processing Pipeline a476dd10ccdd2e6d4578a65e71ba8ca1 https://www.encodeproject.org/files/ENCFF053BPC/@@download/ENCFF053BPC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF510SGU bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF881ANJ 179914 ENCODE Processing Pipeline 670a3e3cabe5d05085ed7cc9f738953b https://www.encodeproject.org/files/ENCFF510SGU/@@download/ENCFF510SGU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF669VHU bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF053BPC 9532983 ENCODE Processing Pipeline 9abb49b8476e64ef573244b04b18598e https://www.encodeproject.org/files/ENCFF669VHU/@@download/ENCFF669VHU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF830TNR bigWig signal p-value ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 193221692 ENCODE Processing Pipeline 438440a301b0ee0b16b731a938aef4a8 https://www.encodeproject.org/files/ENCFF830TNR/@@download/ENCFF830TNR.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF040COP bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF365KGA, ENCFF477ZKJ 246491629 ENCODE Processing Pipeline 668fa301f803bbddd32b8880df17db18 https://www.encodeproject.org/files/ENCFF040COP/@@download/ENCFF040COP.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF936CDJ bigWig fold change over control ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 211897199 ENCODE Processing Pipeline a10385a43e9f55d8724e865fee793442 https://www.encodeproject.org/files/ENCFF936CDJ/@@download/ENCFF936CDJ.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF881ANJ bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF477ZKJ, ENCFF651OUX, ENCFF710SMS 43312 ENCODE Processing Pipeline dc38c4fd39057261900f3f99e0ad349e https://www.encodeproject.org/files/ENCFF881ANJ/@@download/ENCFF881ANJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF727FCY bigBed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF884PFA 10777713 ENCODE Processing Pipeline bd074a8ba0b3042dd4f8c6d21b2dd772 https://www.encodeproject.org/files/ENCFF727FCY/@@download/ENCFF727FCY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF005JKU bed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF053BPC, ENCFF419RSJ, ENCFF881ANJ, ENCFF884PFA 36338 ENCODE Processing Pipeline 075125a01ccc17f057d20302ca2b4036 https://www.encodeproject.org/files/ENCFF005JKU/@@download/ENCFF005JKU.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF616FBI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF005JKU 116517 ENCODE Processing Pipeline 1e4db89d1afc80cd928ff78f84989f20 https://www.encodeproject.org/files/ENCFF616FBI/@@download/ENCFF616FBI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000YKH bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPS 581692205 Sherman Weissman, Yale 672b858244d7c80d101c12ad411ff40f https://www.encodeproject.org/files/ENCFF000YKH/@@download/ENCFF000YKH.bam hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YKI bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPT 873223319 Sherman Weissman, Yale 1d588412402f5fed4d7ef258e4f437d7 https://www.encodeproject.org/files/ENCFF000YKI/@@download/ENCFF000YKI.bam hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YKJ bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMT 369325 Sherman Weissman, Yale 6db8e359875e0eb547a3a7722647d60b https://www.encodeproject.org/files/ENCFF000YKJ/@@download/ENCFF000YKJ.bigBed hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YKK bigWig signal ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 374686213 Sherman Weissman, Yale c60ca493fc0f8f6182119845086aadc7 https://www.encodeproject.org/files/ENCFF000YKK/@@download/ENCFF000YKK.bigWig hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000YPS fastq reads ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 426417173 Sherman Weissman, Yale e51c38d2ec1f980aa13296bca4f611da https://www.encodeproject.org/files/ENCFF000YPS/@@download/ENCFF000YPS.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, borderline replicate concordance, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPT fastq reads ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 711311023 Sherman Weissman, Yale 0b8b3540940dc2b044c1bf050bbb8dfa https://www.encodeproject.org/files/ENCFF000YPT/@@download/ENCFF000YPT.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VMT bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 158167 Sherman Weissman, Yale 1559f0c4b290124d18d21caebe70a85e https://www.encodeproject.org/files/ENCFF001VMT/@@download/ENCFF001VMT.bed.gz hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CWG bed narrowPeak optimal idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 401062 ENCODE Consortium Analysis Working Group d5ec7ee4fc4ed19db3b6d72ce1341cdd https://www.encodeproject.org/files/ENCFF002CWG/@@download/ENCFF002CWG.bed.gz hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF718SBI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWG 934894 ENCODE Consortium 7dbcb2d7156cbcbf9ff8b4549dec11ed https://www.encodeproject.org/files/ENCFF718SBI/@@download/ENCFF718SBI.bigBed hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF034KWU bam unfiltered alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPS, ENCFF807MUK 582332219 ENCODE Processing Pipeline df1f7fef366d97485624fe21a89e615b https://www.encodeproject.org/files/ENCFF034KWU/@@download/ENCFF034KWU.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF014DRH bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPS, ENCFF643CGH 261569545 ENCODE Processing Pipeline f9a0837fb102c412b4b28255903b43b5 https://www.encodeproject.org/files/ENCFF014DRH/@@download/ENCFF014DRH.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF786FUF bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPS, ENCFF807MUK 262031142 ENCODE Processing Pipeline c0a28408e16a7e8d6d0db1a8e2339f5f https://www.encodeproject.org/files/ENCFF786FUF/@@download/ENCFF786FUF.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF498NBR bam unfiltered alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPS, ENCFF643CGH 584175057 ENCODE Processing Pipeline 67de591d5b800af2cbc0d84b7a1bd0db https://www.encodeproject.org/files/ENCFF498NBR/@@download/ENCFF498NBR.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF649RGM bam unfiltered alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPT, ENCFF807MUK 793540336 ENCODE Processing Pipeline 63d3c96b008c3e68efd5419d6918ddf8 https://www.encodeproject.org/files/ENCFF649RGM/@@download/ENCFF649RGM.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF856BHN bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPT, ENCFF807MUK 367573338 ENCODE Processing Pipeline c0e6b0df5474d54d3814081a4fdee07e https://www.encodeproject.org/files/ENCFF856BHN/@@download/ENCFF856BHN.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF880AXG bam unfiltered alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPT, ENCFF643CGH 795684688 ENCODE Processing Pipeline 6d07edf8c1de56fbed14c9127a49810b https://www.encodeproject.org/files/ENCFF880AXG/@@download/ENCFF880AXG.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF553WMU bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPT, ENCFF643CGH 367153153 ENCODE Processing Pipeline 159903c9e945ff33958119dae7c7c826 https://www.encodeproject.org/files/ENCFF553WMU/@@download/ENCFF553WMU.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF815LMX bigWig signal p-value ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF786FUF 246184772 ENCODE Processing Pipeline 6301708bfe66fca50fba5c7bb7ba4774 https://www.encodeproject.org/files/ENCFF815LMX/@@download/ENCFF815LMX.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF898DAB bigWig signal p-value ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014DRH, ENCFF482LDC, ENCFF553WMU 282108429 ENCODE Processing Pipeline 116dc63a7eb374b0c3fd5a85a524c7f5 https://www.encodeproject.org/files/ENCFF898DAB/@@download/ENCFF898DAB.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF348SQZ bigWig signal p-value ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF014DRH, ENCFF482LDC 212943630 ENCODE Processing Pipeline fcb516e66655305952cd07592f898c01 https://www.encodeproject.org/files/ENCFF348SQZ/@@download/ENCFF348SQZ.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF276XVE bigWig signal p-value ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF553WMU 261446550 ENCODE Processing Pipeline a3f58779369c208b930258f4ab94913d https://www.encodeproject.org/files/ENCFF276XVE/@@download/ENCFF276XVE.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF319GVK bigWig fold change over control ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF014DRH, ENCFF482LDC 120385890 ENCODE Processing Pipeline 4d1ea036629b3b400ab4fa32696552d2 https://www.encodeproject.org/files/ENCFF319GVK/@@download/ENCFF319GVK.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF728VLI bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF014DRH, ENCFF482LDC 2632162 ENCODE Processing Pipeline ba407bb759b9d6cd787864ba08319b8b https://www.encodeproject.org/files/ENCFF728VLI/@@download/ENCFF728VLI.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF677RZA bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014DRH, ENCFF482LDC, ENCFF553WMU 5035983 ENCODE Processing Pipeline aa47c7e820a787c18a61ba841aa9466b https://www.encodeproject.org/files/ENCFF677RZA/@@download/ENCFF677RZA.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF330FNH bigWig signal p-value ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF856BHN 224816887 ENCODE Processing Pipeline d61b74379566dbacddaff2ee6d8e0665 https://www.encodeproject.org/files/ENCFF330FNH/@@download/ENCFF330FNH.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF542EHG bigWig fold change over control ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF786FUF 122445808 ENCODE Processing Pipeline a0130c36a26b8a44e7bc2551e17fc51a https://www.encodeproject.org/files/ENCFF542EHG/@@download/ENCFF542EHG.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF576GQM bigWig fold change over control ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014DRH, ENCFF482LDC, ENCFF553WMU 254446288 ENCODE Processing Pipeline b1f4cbc6d50f2f60812a1a61a0e7607d https://www.encodeproject.org/files/ENCFF576GQM/@@download/ENCFF576GQM.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF734MOZ bigWig fold change over control ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF553WMU 163920396 ENCODE Processing Pipeline 0b70248ef3aa63bb60bdf4b9d934cad8 https://www.encodeproject.org/files/ENCFF734MOZ/@@download/ENCFF734MOZ.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF688LLV bigWig signal p-value ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF786FUF, ENCFF856BHN 285610788 ENCODE Processing Pipeline 1df1525f59896e3c3d4102d44b49cb95 https://www.encodeproject.org/files/ENCFF688LLV/@@download/ENCFF688LLV.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF711KUA bigWig fold change over control ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF856BHN 163827736 ENCODE Processing Pipeline 94a783ccd1e042acd1e026f8859fa0b8 https://www.encodeproject.org/files/ENCFF711KUA/@@download/ENCFF711KUA.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF637LLS bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF728VLI 6105821 ENCODE Processing Pipeline bdd222af25ac2ebadb52f98103d84e11 https://www.encodeproject.org/files/ENCFF637LLS/@@download/ENCFF637LLS.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF122BCQ bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF482LDC, ENCFF553WMU 4626333 ENCODE Processing Pipeline 3d2c6ee0cf440e413e1a219592af0760 https://www.encodeproject.org/files/ENCFF122BCQ/@@download/ENCFF122BCQ.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF871DRY bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF122BCQ 9649696 ENCODE Processing Pipeline 632a80c2c1a2b38993fc0d414003dd15 https://www.encodeproject.org/files/ENCFF871DRY/@@download/ENCFF871DRY.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF795LDM bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF677RZA 12647331 ENCODE Processing Pipeline bd4a1adfd5cd53356501bcbfdbd48395 https://www.encodeproject.org/files/ENCFF795LDM/@@download/ENCFF795LDM.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF723QGS bed narrowPeak conservative idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF122BCQ, ENCFF419RSJ, ENCFF677RZA, ENCFF728VLI 221919 ENCODE Processing Pipeline 9ca035477c6ae95fe30eada01d7ffa43 https://www.encodeproject.org/files/ENCFF723QGS/@@download/ENCFF723QGS.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF162CMX bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF786FUF 2638510 ENCODE Processing Pipeline f5b08c1bb672d0c431f41530b2bea7fe https://www.encodeproject.org/files/ENCFF162CMX/@@download/ENCFF162CMX.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF112BJR bigWig fold change over control ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF786FUF, ENCFF856BHN 255331828 ENCODE Processing Pipeline a9b665f8f411d3624bae4044f80f504c https://www.encodeproject.org/files/ENCFF112BJR/@@download/ENCFF112BJR.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF634ZEE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF723QGS 422646 ENCODE Processing Pipeline 00b362ee635f98a977162059a8a94e2d https://www.encodeproject.org/files/ENCFF634ZEE/@@download/ENCFF634ZEE.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF527EGF bed narrowPeak optimal idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF122BCQ, ENCFF419RSJ, ENCFF677RZA, ENCFF728VLI 371250 ENCODE Processing Pipeline 3a8523899d1f1064e0fc3ca82eed8c9b https://www.encodeproject.org/files/ENCFF527EGF/@@download/ENCFF527EGF.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF360BLD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF527EGF 753384 ENCODE Processing Pipeline e6b7caaf2ebaa50a5ec2758a9dbda24b https://www.encodeproject.org/files/ENCFF360BLD/@@download/ENCFF360BLD.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF934ENB bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF786FUF, ENCFF856BHN 5035619 ENCODE Processing Pipeline 71fc661f1eec0e96a9d500014c38457b https://www.encodeproject.org/files/ENCFF934ENB/@@download/ENCFF934ENB.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF696DPC bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF162CMX 6115945 ENCODE Processing Pipeline e3ff084a762e922e4dadfb5fd76fd725 https://www.encodeproject.org/files/ENCFF696DPC/@@download/ENCFF696DPC.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF987HSI bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF856BHN 4571912 ENCODE Processing Pipeline 4d3e144ab7b5f8f68869361d01a844a0 https://www.encodeproject.org/files/ENCFF987HSI/@@download/ENCFF987HSI.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF700KHO bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF934ENB 12648302 ENCODE Processing Pipeline 0970512eaef9679f0d737c68abee399a https://www.encodeproject.org/files/ENCFF700KHO/@@download/ENCFF700KHO.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF217MOG bigBed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF987HSI 9585884 ENCODE Processing Pipeline e8387fa444c1eb08c820fb68a7e4a795 https://www.encodeproject.org/files/ENCFF217MOG/@@download/ENCFF217MOG.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF279AQA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF390IMT 422391 ENCODE Processing Pipeline 19e1bfda8f23c4b39496137a01b8c7bf https://www.encodeproject.org/files/ENCFF279AQA/@@download/ENCFF279AQA.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF390IMT bed narrowPeak conservative idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF162CMX, ENCFF934ENB, ENCFF987HSI 221318 ENCODE Processing Pipeline da826e78c48b0e1e1aa8ae4611dab38f https://www.encodeproject.org/files/ENCFF390IMT/@@download/ENCFF390IMT.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF099SDW bed narrowPeak optimal idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF162CMX, ENCFF934ENB, ENCFF987HSI 365512 ENCODE Processing Pipeline a5ea998d3571ba34457f33fe6da76db2 https://www.encodeproject.org/files/ENCFF099SDW/@@download/ENCFF099SDW.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF267ECZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF099SDW 745024 ENCODE Processing Pipeline 7de51ebab8ed9fa4f7f433458d33eed2 https://www.encodeproject.org/files/ENCFF267ECZ/@@download/ENCFF267ECZ.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001HIL bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIV 587989739 John Stamatoyannopoulos, UW f11d20cc7d60bf939e2aee4d3d57bc4b https://www.encodeproject.org/files/ENCFF001HIL/@@download/ENCFF001HIL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIM bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HJE 979060477 John Stamatoyannopoulos, UW 3146ed1874bc9fdbd0e07c6624b07b45 https://www.encodeproject.org/files/ENCFF001HIM/@@download/ENCFF001HIM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIN bigBed broadPeak hotspots ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XPN 2483987 John Stamatoyannopoulos, UW c5b30cc68e3145ee86e0a1c0cdac52fe https://www.encodeproject.org/files/ENCFF001HIN/@@download/ENCFF001HIN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIO bigBed broadPeak hotspots ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XPP 6192396 John Stamatoyannopoulos, UW d526a4ac9d66acbb88b0da8d4207dfd6 https://www.encodeproject.org/files/ENCFF001HIO/@@download/ENCFF001HIO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIP bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XPO 811979 John Stamatoyannopoulos, UW 0be0e1589887ae19ea1da0248bfada67 https://www.encodeproject.org/files/ENCFF001HIP/@@download/ENCFF001HIP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIQ bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XPQ 1480689 John Stamatoyannopoulos, UW 85aa7158a3b24a581cdbd66d7fbd5992 https://www.encodeproject.org/files/ENCFF001HIQ/@@download/ENCFF001HIQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIT bigWig raw signal ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIM 159520619 John Stamatoyannopoulos, UW f99340b2571be2c9b717bd508000f111 https://www.encodeproject.org/files/ENCFF001HIT/@@download/ENCFF001HIT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIU bigWig raw signal ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIL 114036494 John Stamatoyannopoulos, UW 94b87e972d9cb998545fb165e7f9bc2d https://www.encodeproject.org/files/ENCFF001HIU/@@download/ENCFF001HIU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HIV fastq reads ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 794276929 John Stamatoyannopoulos, UW 7bd4575a8e7317a5ab36241032783b24 https://www.encodeproject.org/files/ENCFF001HIV/@@download/ENCFF001HIV.fastq.gz Illumina Genome Analyzer /files/ENCFF001HJJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001HJE fastq reads ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 1142858701 John Stamatoyannopoulos, UW 4087545de8b9fc603138c3f846a37c0a https://www.encodeproject.org/files/ENCFF001HJE/@@download/ENCFF001HJE.fastq.gz Illumina Genome Analyzer /files/ENCFF001HJJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001XPN bed broadPeak hotspots ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIL 1581837 John Stamatoyannopoulos, UW ef47c93caa6f5863ed0e0fac336a1b74 https://www.encodeproject.org/files/ENCFF001XPN/@@download/ENCFF001XPN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001XPO bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIL 531792 John Stamatoyannopoulos, UW ce871a4739488497f410aa5a2f67ea93 https://www.encodeproject.org/files/ENCFF001XPO/@@download/ENCFF001XPO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001XPP bed broadPeak hotspots ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIM 3550986 John Stamatoyannopoulos, UW 4d67dc2baa515bc0819aea485abc4472 https://www.encodeproject.org/files/ENCFF001XPP/@@download/ENCFF001XPP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF001XPQ bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIM 869927 John Stamatoyannopoulos, UW 7996532948c808b2eb4f82e13c63593a https://www.encodeproject.org/files/ENCFF001XPQ/@@download/ENCFF001XPQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF002DCN bed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HIL, ENCFF001HIM 1041973 ENCODE Consortium Analysis Working Group 6f6e5bd28de13ea3f263d372708f7a6d https://www.encodeproject.org/files/ENCFF002DCN/@@download/ENCFF002DCN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF384GGQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DCN 2080974 ENCODE Consortium da1dd5764cac0b74d66a07263cec9e70 https://www.encodeproject.org/files/ENCFF384GGQ/@@download/ENCFF384GGQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF955QCB bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HIV, ENCFF643CGH 433619344 ENCODE Processing Pipeline feba9b36c7979a77b36f5ac9b91a9fe9 https://www.encodeproject.org/files/ENCFF955QCB/@@download/ENCFF955QCB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF880WAM bam unfiltered alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HIV, ENCFF643CGH 865444296 ENCODE Processing Pipeline bfea2bf5f786958742e733f884f45f86 https://www.encodeproject.org/files/ENCFF880WAM/@@download/ENCFF880WAM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF723TFB bam unfiltered alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJE, ENCFF643CGH 1283782423 ENCODE Processing Pipeline 172016d053c8528beaba71df9ee907c5 https://www.encodeproject.org/files/ENCFF723TFB/@@download/ENCFF723TFB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF473LHB bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJE, ENCFF643CGH 816561039 ENCODE Processing Pipeline 950c2a3f77ab82ce278baad18174718e https://www.encodeproject.org/files/ENCFF473LHB/@@download/ENCFF473LHB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF133ABI bam unfiltered alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HIV, ENCFF807MUK 862495618 ENCODE Processing Pipeline 0201b5c8344571ad00d5825b0af1ee5f https://www.encodeproject.org/files/ENCFF133ABI/@@download/ENCFF133ABI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF935VDG bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HIV, ENCFF807MUK 433826484 ENCODE Processing Pipeline cef5df4a191c4a8031d1ee73d455c6bb https://www.encodeproject.org/files/ENCFF935VDG/@@download/ENCFF935VDG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF478THX bam unfiltered alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJE, ENCFF807MUK 1279070942 ENCODE Processing Pipeline 99ee22dab140c15063f6b0141ad94628 https://www.encodeproject.org/files/ENCFF478THX/@@download/ENCFF478THX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF022ACL bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJE, ENCFF807MUK 816813498 ENCODE Processing Pipeline 1b6f1f6c5cce3720f74686673672b875 https://www.encodeproject.org/files/ENCFF022ACL/@@download/ENCFF022ACL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF762QPS bigWig fold change over control ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF955QCB 269028780 ENCODE Processing Pipeline 7d486bde7c5241b35991f3ce520ec946 https://www.encodeproject.org/files/ENCFF762QPS/@@download/ENCFF762QPS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF597SBD bigWig fold change over control ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF473LHB 372149395 ENCODE Processing Pipeline 790ad1bd897f3940e2c9a49996437db9 https://www.encodeproject.org/files/ENCFF597SBD/@@download/ENCFF597SBD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF158XRH bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF473LHB 4673234 ENCODE Processing Pipeline 77584fe6cde81df318e0fff5ddec22b6 https://www.encodeproject.org/files/ENCFF158XRH/@@download/ENCFF158XRH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF366SWC bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF955QCB 4389478 ENCODE Processing Pipeline b16a914721edbaea49f241825f7b2a3c https://www.encodeproject.org/files/ENCFF366SWC/@@download/ENCFF366SWC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF865TXU bigWig signal p-value ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF955QCB 409445408 ENCODE Processing Pipeline fb92b25efd02b182de8f6ddbeed7df3c https://www.encodeproject.org/files/ENCFF865TXU/@@download/ENCFF865TXU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF284CMO bigWig signal p-value ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF473LHB 474614066 ENCODE Processing Pipeline 6a2f44e108312029fa30e2ec67c3ece8 https://www.encodeproject.org/files/ENCFF284CMO/@@download/ENCFF284CMO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF709DBL bigWig signal p-value ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF473LHB, ENCFF955QCB 577274631 ENCODE Processing Pipeline 18de99d4e90d68a580c3bc401ce6a9a0 https://www.encodeproject.org/files/ENCFF709DBL/@@download/ENCFF709DBL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF417JZN bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF158XRH 11115470 ENCODE Processing Pipeline 3b8cdc379d1af5c9e286765c787ae321 https://www.encodeproject.org/files/ENCFF417JZN/@@download/ENCFF417JZN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF255LCA bed narrowPeak conservative idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF158XRH, ENCFF276VRZ, ENCFF366SWC, ENCFF419RSJ 667455 ENCODE Processing Pipeline 909062649b3fa65c8b5ba463a0dccc4b https://www.encodeproject.org/files/ENCFF255LCA/@@download/ENCFF255LCA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF161ALY bigBed narrowPeak conservative idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF255LCA 1201074 ENCODE Processing Pipeline e511cec6c2e714ad94fa4636ceddae1f https://www.encodeproject.org/files/ENCFF161ALY/@@download/ENCFF161ALY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF532RCK bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF276VRZ 11622458 ENCODE Processing Pipeline bd74b3b1b7cb16278d5a23aa2121ecb0 https://www.encodeproject.org/files/ENCFF532RCK/@@download/ENCFF532RCK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF515KNI bed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF158XRH, ENCFF276VRZ, ENCFF366SWC, ENCFF419RSJ 775259 ENCODE Processing Pipeline eb915a872c958f40f6cc94ff7cd0ea4b https://www.encodeproject.org/files/ENCFF515KNI/@@download/ENCFF515KNI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF629HWH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF515KNI 1339695 ENCODE Processing Pipeline 25f265ea2468bcfd2cb4c3a699c932ca https://www.encodeproject.org/files/ENCFF629HWH/@@download/ENCFF629HWH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF757YRI bigWig fold change over control ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF473LHB, ENCFF955QCB 534085590 ENCODE Processing Pipeline 0c8648e3b544a0b06dfb1b4cea56303e https://www.encodeproject.org/files/ENCFF757YRI/@@download/ENCFF757YRI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF276VRZ bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF473LHB, ENCFF955QCB 5192808 ENCODE Processing Pipeline c286bd970f0629e3c5b72d54a35c8b4e https://www.encodeproject.org/files/ENCFF276VRZ/@@download/ENCFF276VRZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF687DRN bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF366SWC 10566363 ENCODE Processing Pipeline 9080a0d651297eaa9236ff65a008b13c https://www.encodeproject.org/files/ENCFF687DRN/@@download/ENCFF687DRN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF377FQK bigBed narrowPeak conservative idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF861LTN 1210386 ENCODE Processing Pipeline 57c6da04b71bb04358a6acbd2d5c21ff https://www.encodeproject.org/files/ENCFF377FQK/@@download/ENCFF377FQK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF531MYX bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF542XFE 10389547 ENCODE Processing Pipeline 5e1ce00a33d76905427a5f041a3f87fd https://www.encodeproject.org/files/ENCFF531MYX/@@download/ENCFF531MYX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF762JAU bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF724RQI 11189144 ENCODE Processing Pipeline be3070a8bbf289c1d96104bebf86f72b https://www.encodeproject.org/files/ENCFF762JAU/@@download/ENCFF762JAU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF815IVJ bigWig fold change over control ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF188FPI, ENCFF935VDG 268706554 ENCODE Processing Pipeline 66e82e9519dab162956000f6d20b987b https://www.encodeproject.org/files/ENCFF815IVJ/@@download/ENCFF815IVJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF311GEF bigWig signal p-value ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF022ACL, ENCFF188FPI 463989836 ENCODE Processing Pipeline 2261bd746d6e479d0a6b109a8007a48f https://www.encodeproject.org/files/ENCFF311GEF/@@download/ENCFF311GEF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF728AYZ bigWig fold change over control ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF022ACL, ENCFF188FPI, ENCFF935VDG 533601698 ENCODE Processing Pipeline 7300a0fce6416ecf8a406b9e30a8124b https://www.encodeproject.org/files/ENCFF728AYZ/@@download/ENCFF728AYZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF542XFE bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF188FPI, ENCFF935VDG 4274351 ENCODE Processing Pipeline 4e17e26fd1b6a5c426615f1e6b8b4972 https://www.encodeproject.org/files/ENCFF542XFE/@@download/ENCFF542XFE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF185RAP bigWig signal p-value ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF022ACL, ENCFF188FPI, ENCFF935VDG 577627324 ENCODE Processing Pipeline ad9f6fd14ffbe791aad5b666a1ab9dc1 https://www.encodeproject.org/files/ENCFF185RAP/@@download/ENCFF185RAP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF897VMF bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF022ACL, ENCFF188FPI, ENCFF935VDG 5216099 ENCODE Processing Pipeline 97851239f6dc2a104bfc3ac2133c2070 https://www.encodeproject.org/files/ENCFF897VMF/@@download/ENCFF897VMF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF660HHS bed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF542XFE, ENCFF724RQI, ENCFF897VMF 765621 ENCODE Processing Pipeline 4c00b542348b145ccdfb55fee6c12ab9 https://www.encodeproject.org/files/ENCFF660HHS/@@download/ENCFF660HHS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF274JJM bigWig signal p-value ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF188FPI, ENCFF935VDG 386774114 ENCODE Processing Pipeline da55e3ec0a0e80c37d0bd1164cad6c04 https://www.encodeproject.org/files/ENCFF274JJM/@@download/ENCFF274JJM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF635DTN bigWig fold change over control ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF022ACL, ENCFF188FPI 371026892 ENCODE Processing Pipeline 5635fda9938b019095e6fc32a9a684db https://www.encodeproject.org/files/ENCFF635DTN/@@download/ENCFF635DTN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF724RQI bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF022ACL, ENCFF188FPI 4731292 ENCODE Processing Pipeline 5c31453f4907d1601b859506d877fc64 https://www.encodeproject.org/files/ENCFF724RQI/@@download/ENCFF724RQI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF861LTN bed narrowPeak conservative idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF542XFE, ENCFF724RQI, ENCFF897VMF 673471 ENCODE Processing Pipeline 54d5b186e2b2aa664e397da1c791b00f https://www.encodeproject.org/files/ENCFF861LTN/@@download/ENCFF861LTN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF787AUS bigBed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF897VMF 11644538 ENCODE Processing Pipeline da8df14eeb82b32e49052f9c9d65194b https://www.encodeproject.org/files/ENCFF787AUS/@@download/ENCFF787AUS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF608IHX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF660HHS 1328698 ENCODE Processing Pipeline 1f58e79a30e6535ba5fa0005b41613f5 https://www.encodeproject.org/files/ENCFF608IHX/@@download/ENCFF608IHX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF000YCI bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 1 478427019 Michael Snyder, Stanford d6e94d1191f45f5290a10f04443933ea https://www.encodeproject.org/files/ENCFF000YCI/@@download/ENCFF000YCI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000YCJ bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VLP 2266011 Michael Snyder, Stanford 3111613d31f0199dd7aa299f0625cedd https://www.encodeproject.org/files/ENCFF000YCJ/@@download/ENCFF000YCJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000YCK fastq reads ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 899624943 Michael Snyder, Stanford 337ef9b4c46b19ef49048915b7ad280a https://www.encodeproject.org/files/ENCFF000YCK/@@download/ENCFF000YCK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000YCM fastq reads ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 858485815 Michael Snyder, Stanford bc2b092618d8541f1c93cf95a2b72b23 https://www.encodeproject.org/files/ENCFF000YCM/@@download/ENCFF000YCM.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCS/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000YCO bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 1 439531862 Michael Snyder, Stanford ee1553f398c088250b900854c41f0087 https://www.encodeproject.org/files/ENCFF000YCO/@@download/ENCFF000YCO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000YCP bigWig signal ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 340616958 Michael Snyder, Stanford 9c9dc385f97e7e3f519570331ff76f00 https://www.encodeproject.org/files/ENCFF000YCP/@@download/ENCFF000YCP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001VLP bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1032556 Michael Snyder, Stanford 0844adeaa2583de315eee3804e91b158 https://www.encodeproject.org/files/ENCFF001VLP/@@download/ENCFF001VLP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002CVH bed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1000229 ENCODE Consortium Analysis Working Group 2ef1d56d5777c1eec6dc2433a3cfb1ba https://www.encodeproject.org/files/ENCFF002CVH/@@download/ENCFF002CVH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from missing control alignments ENCFF478PEQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVH 2136939 ENCODE Consortium 2d9fdb79a1efa391bf194060969cda3b https://www.encodeproject.org/files/ENCFF478PEQ/@@download/ENCFF478PEQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF505JVH bam unfiltered alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YCM, ENCFF643CGH 898400524 ENCODE Processing Pipeline 4bab3f53dc5f9a46b1125be9223885ca https://www.encodeproject.org/files/ENCFF505JVH/@@download/ENCFF505JVH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF431WUY bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YCM, ENCFF643CGH 580121956 ENCODE Processing Pipeline 28a097de1f25672e7180ecce3438793e https://www.encodeproject.org/files/ENCFF431WUY/@@download/ENCFF431WUY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF356VNC bam unfiltered alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCK, ENCFF643CGH 971192759 ENCODE Processing Pipeline d4dd5210030f32524102961c89c6614a https://www.encodeproject.org/files/ENCFF356VNC/@@download/ENCFF356VNC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF010FWV bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCK, ENCFF643CGH 636974258 ENCODE Processing Pipeline 1a08565befc3f5d2e82ce20bffebd0ab https://www.encodeproject.org/files/ENCFF010FWV/@@download/ENCFF010FWV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF831HYE bam unfiltered alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YCM, ENCFF807MUK 895288185 ENCODE Processing Pipeline 6110b4780cedfdd718cb3db02a1b7c02 https://www.encodeproject.org/files/ENCFF831HYE/@@download/ENCFF831HYE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF455FID bam unfiltered alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCK, ENCFF807MUK 967562852 ENCODE Processing Pipeline 86e498c753fe8ac0452836a66ce6bdc3 https://www.encodeproject.org/files/ENCFF455FID/@@download/ENCFF455FID.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF066FGA bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YCM, ENCFF807MUK 580487204 ENCODE Processing Pipeline 88f2d8229aeb920e1ad440ec60691179 https://www.encodeproject.org/files/ENCFF066FGA/@@download/ENCFF066FGA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF847VPR bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCK, ENCFF807MUK 637328827 ENCODE Processing Pipeline c06724c19848b14165c39d8ae9b99a01 https://www.encodeproject.org/files/ENCFF847VPR/@@download/ENCFF847VPR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF603PYX bigWig fold change over control ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 690470247 ENCODE Processing Pipeline 09af2bd7a0321d1c0377dd6e42ebdf96 https://www.encodeproject.org/files/ENCFF603PYX/@@download/ENCFF603PYX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF070OIO bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 4526183 ENCODE Processing Pipeline 5e6f91d553784df46f528446508d89e0 https://www.encodeproject.org/files/ENCFF070OIO/@@download/ENCFF070OIO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF719YRP bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG 4541725 ENCODE Processing Pipeline be07150654ff67560989d7344ad9ffe7 https://www.encodeproject.org/files/ENCFF719YRP/@@download/ENCFF719YRP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF101ROM bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF598QPN 11856727 ENCODE Processing Pipeline cd8f5a9748db4f04e166be2871e9bbd3 https://www.encodeproject.org/files/ENCFF101ROM/@@download/ENCFF101ROM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF493JZB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF453XKM 1380215 ENCODE Processing Pipeline 7cc96295fcd5ef183f1749f16970b2ab https://www.encodeproject.org/files/ENCFF493JZB/@@download/ENCFF493JZB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF950JXE bigWig signal p-value ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 588712055 ENCODE Processing Pipeline 6eb6d6af3b05652a7f1843bb75730d33 https://www.encodeproject.org/files/ENCFF950JXE/@@download/ENCFF950JXE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF598QPN bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 5101450 ENCODE Processing Pipeline bfc5ce2bfdc0aa2614b765f74660815b https://www.encodeproject.org/files/ENCFF598QPN/@@download/ENCFF598QPN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF311QHD bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF719YRP 11132196 ENCODE Processing Pipeline 0b457199daf242368b205df18cc8288a https://www.encodeproject.org/files/ENCFF311QHD/@@download/ENCFF311QHD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF339NYN bigWig fold change over control ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF431WUY 383755902 ENCODE Processing Pipeline 4c23fd5b5f9eafcbc7cf5d811b9c562c https://www.encodeproject.org/files/ENCFF339NYN/@@download/ENCFF339NYN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF307XFM bed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF034ZTP, ENCFF120JMB, ENCFF362RJA, ENCFF419RSJ 749871 ENCODE Processing Pipeline f60418b9e2d782a74e0696aaeaa1c570 https://www.encodeproject.org/files/ENCFF307XFM/@@download/ENCFF307XFM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF288KSF bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF070OIO 11216351 ENCODE Processing Pipeline b6e6e0e8b67bf902894242f16ae20272 https://www.encodeproject.org/files/ENCFF288KSF/@@download/ENCFF288KSF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF091RVM bigWig signal p-value ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF431WUY 691683862 ENCODE Processing Pipeline 235d4995174a1e43efed7897fb7aaf1f https://www.encodeproject.org/files/ENCFF091RVM/@@download/ENCFF091RVM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF895EDK bigWig signal p-value ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010FWV, ENCFF431WUY 715753908 ENCODE Processing Pipeline 90ccc0a1d9550fe53c8e37c1a7a127b7 https://www.encodeproject.org/files/ENCFF895EDK/@@download/ENCFF895EDK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF034ZTP bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF010FWV 4524130 ENCODE Processing Pipeline e064e52a9e2b57a57719275e623a419e https://www.encodeproject.org/files/ENCFF034ZTP/@@download/ENCFF034ZTP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF449BUW bigWig fold change over control ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 455727677 ENCODE Processing Pipeline 2ab6846866bd7445fd7a8ad106e57860 https://www.encodeproject.org/files/ENCFF449BUW/@@download/ENCFF449BUW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF903VGC bigWig signal p-value ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG 577384842 ENCODE Processing Pipeline 7a7417a34cb36be3e1e40919a40c8e82 https://www.encodeproject.org/files/ENCFF903VGC/@@download/ENCFF903VGC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF453XKM bed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF070OIO, ENCFF598QPN, ENCFF719YRP 749002 ENCODE Processing Pipeline 7012df7b06605f9a5fb69695e1a4178e https://www.encodeproject.org/files/ENCFF453XKM/@@download/ENCFF453XKM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF362RJA bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF431WUY 4540842 ENCODE Processing Pipeline f90c7e630d7e42be292fcfd9b73e322f https://www.encodeproject.org/files/ENCFF362RJA/@@download/ENCFF362RJA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF884DHQ bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF034ZTP 11211899 ENCODE Processing Pipeline 39130d9c67b880709dbe5c039e16855d https://www.encodeproject.org/files/ENCFF884DHQ/@@download/ENCFF884DHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF583IZF bigWig signal p-value ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 738867214 ENCODE Processing Pipeline 5c78e0477cb2ff228ee23e963c7f1204 https://www.encodeproject.org/files/ENCFF583IZF/@@download/ENCFF583IZF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF476OKN bigWig fold change over control ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG 385735956 ENCODE Processing Pipeline 809b1591168a47605699c725b790e1ae https://www.encodeproject.org/files/ENCFF476OKN/@@download/ENCFF476OKN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF120JMB bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010FWV, ENCFF431WUY 5101127 ENCODE Processing Pipeline 2e110a36c4f8ddcae5dddfca768d5298 https://www.encodeproject.org/files/ENCFF120JMB/@@download/ENCFF120JMB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF396UPZ bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF120JMB 11867429 ENCODE Processing Pipeline 13f57d06835c27cc46cf2d502e46798b https://www.encodeproject.org/files/ENCFF396UPZ/@@download/ENCFF396UPZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF722EUH bigWig signal p-value ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF010FWV 644122152 ENCODE Processing Pipeline af6f12e0d4ed1bebbfd95c3d37b232ae https://www.encodeproject.org/files/ENCFF722EUH/@@download/ENCFF722EUH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF544TAR bigWig fold change over control ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF010FWV 455342661 ENCODE Processing Pipeline a63f049783a41b8c48fa6eeb3f97ef10 https://www.encodeproject.org/files/ENCFF544TAR/@@download/ENCFF544TAR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF256DUS bigWig fold change over control ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF010FWV, ENCFF431WUY 689330378 ENCODE Processing Pipeline 85491734bad2e596b30c7cbdaedc83fe https://www.encodeproject.org/files/ENCFF256DUS/@@download/ENCFF256DUS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF937DRO bigBed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF362RJA 11142925 ENCODE Processing Pipeline 4247d6d2ce01e376724635d91642fcad https://www.encodeproject.org/files/ENCFF937DRO/@@download/ENCFF937DRO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF079FWO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF307XFM 1383567 ENCODE Processing Pipeline 33356649050fb5077f8618c891195c91 https://www.encodeproject.org/files/ENCFF079FWO/@@download/ENCFF079FWO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF000BAA bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 1 1674273513 Bradley Bernstein, Broad 5c48c82ee04bd49da4d4437a254eaa53 https://www.encodeproject.org/files/ENCFF000BAA/@@download/ENCFF000BAA.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity missing derived_from, inconsistent mapped reads lengths ENCFF000BAC bigBed broadPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SVQ 800439 Bradley Bernstein, Broad 4e840e89db2519d37d857e90e60d1eab https://www.encodeproject.org/files/ENCFF000BAC/@@download/ENCFF000BAC.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF000BAD bigWig signal ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 491514370 Bradley Bernstein, Broad 7c9cbabf47b0cdd06e297ef936d54273 https://www.encodeproject.org/files/ENCFF000BAD/@@download/ENCFF000BAD.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity missing derived_from, inconsistent mapped reads lengths ENCFF001SVQ bed broadPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 458323 Bradley Bernstein, Broad 92b3de0c4fc9fcd7a18a267353cda5b7 https://www.encodeproject.org/files/ENCFF001SVQ/@@download/ENCFF001SVQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity missing derived_from, inconsistent mapped reads lengths ENCFF523HNT fastq reads ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 2 36 single-ended 882186885 Bradley Bernstein, Broad 610120a5649f92f173d9c85e202011da https://www.encodeproject.org/files/ENCFF523HNT/@@download/ENCFF523HNT.fastq.gz Illumina HiSeq 2000 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF252NFT fastq reads ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 3 36 single-ended 1143526219 Bradley Bernstein, Broad 8e8ba957500af7ba6a84199b0dc93dc9 https://www.encodeproject.org/files/ENCFF252NFT/@@download/ENCFF252NFT.fastq.gz Illumina HiSeq 2000 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF061EJH fastq reads ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1734463075 Bradley Bernstein, Broad 81581e648192fbc856f20adba4d569ca https://www.encodeproject.org/files/ENCFF061EJH/@@download/ENCFF061EJH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF003KFS fastq reads ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 1 76 single-ended 3171505356 Bradley Bernstein, Broad bbde9e2607e1546e03a1410576ac074e https://www.encodeproject.org/files/ENCFF003KFS/@@download/ENCFF003KFS.fastq.gz Illumina HiSeq 2500 /files/ENCFF164ZWM/, /files/ENCFF740ECI/, /files/ENCFF805KPU/, /files/ENCFF809ZPN/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF199TML fastq reads ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 1 25 paired-ended 1 ENCFF489CDY 888708905 Bradley Bernstein, Broad c044a9f02344061ed86b2cb38bc12e21 https://www.encodeproject.org/files/ENCFF199TML/@@download/ENCFF199TML.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths missing controlled_by ENCFF489CDY fastq reads ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 1 25 paired-ended 2 ENCFF199TML 881470293 Bradley Bernstein, Broad 507157909aebd9c8aea7b781a7aa23aa https://www.encodeproject.org/files/ENCFF489CDY/@@download/ENCFF489CDY.fastq.gz Illumina HiSeq 2500 archived low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths missing controlled_by ENCFF162SNW bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF061EJH, ENCFF252NFT, ENCFF523HNT, ENCFF807MUK 3031809268 ENCODE Processing Pipeline 8641ac4be18da909dc41b6f4c0185e9e https://www.encodeproject.org/files/ENCFF162SNW/@@download/ENCFF162SNW.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF534JYP bam unfiltered alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF061EJH, ENCFF252NFT, ENCFF523HNT, ENCFF643CGH 4846494319 ENCODE Processing Pipeline 349ff7b644565e338c10cecc84ceda1e https://www.encodeproject.org/files/ENCFF534JYP/@@download/ENCFF534JYP.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF481HLX bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF061EJH, ENCFF252NFT, ENCFF523HNT, ENCFF643CGH 3031177188 ENCODE Processing Pipeline 91340643ce88740c8a614bde103641ef https://www.encodeproject.org/files/ENCFF481HLX/@@download/ENCFF481HLX.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF742XNS bam unfiltered alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF061EJH, ENCFF252NFT, ENCFF523HNT, ENCFF807MUK 4814617091 ENCODE Processing Pipeline c6f8c27fffd8a3816cd66d4f2a15c6cb https://www.encodeproject.org/files/ENCFF742XNS/@@download/ENCFF742XNS.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF852EMR bam unfiltered alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF003KFS, ENCFF643CGH 2286062553 ENCODE Processing Pipeline a7bc55d6eed0caff0d5fb865aec1cf04 https://www.encodeproject.org/files/ENCFF852EMR/@@download/ENCFF852EMR.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF579UZO bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF003KFS, ENCFF643CGH 1182125461 ENCODE Processing Pipeline 153d6fa04735a063dba3613302e91b07 https://www.encodeproject.org/files/ENCFF579UZO/@@download/ENCFF579UZO.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF413QCT bam unfiltered alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF003KFS, ENCFF807MUK 2274331553 ENCODE Processing Pipeline d32c032beba6b90b8a225e2ce5ef0d7c https://www.encodeproject.org/files/ENCFF413QCT/@@download/ENCFF413QCT.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF536QLT bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF003KFS, ENCFF807MUK 1182699305 ENCODE Processing Pipeline b3a22445419097bdbfad531814915440 https://www.encodeproject.org/files/ENCFF536QLT/@@download/ENCFF536QLT.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF588OJE bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF162SNW, ENCFF536QLT, ENCFF727XHW, ENCFF850EIY 7309782 ENCODE Processing Pipeline 1e485c04c7ec082e1f48a7e1cb564e9f https://www.encodeproject.org/files/ENCFF588OJE/@@download/ENCFF588OJE.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF279FRK bigBed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF588OJE 12428399 ENCODE Processing Pipeline 5d630acf5d792ffeddd82e739c666daa https://www.encodeproject.org/files/ENCFF279FRK/@@download/ENCFF279FRK.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF613YYI bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF336HCY 772539 ENCODE Processing Pipeline 515e69ff7b478b0b3e5ed6ffd9d839a7 https://www.encodeproject.org/files/ENCFF613YYI/@@download/ENCFF613YYI.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF371ZTN bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162SNW, ENCFF727XHW, ENCFF850EIY 7297537 ENCODE Processing Pipeline ac165fa23d62749776220e355048b68c https://www.encodeproject.org/files/ENCFF371ZTN/@@download/ENCFF371ZTN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF379JKN bigBed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF371ZTN 12402793 ENCODE Processing Pipeline 2e5f487595ea9731a246e539cf979e98 https://www.encodeproject.org/files/ENCFF379JKN/@@download/ENCFF379JKN.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF069FAC bigWig signal p-value ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF536QLT, ENCFF727XHW, ENCFF850EIY 1233880361 ENCODE Processing Pipeline 838b4266c73a26541911bb16488406e0 https://www.encodeproject.org/files/ENCFF069FAC/@@download/ENCFF069FAC.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF907MBG bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF536QLT, ENCFF727XHW, ENCFF850EIY 6788038 ENCODE Processing Pipeline 0e6405b61e29a9e90ebcc6bbcdd6f1db https://www.encodeproject.org/files/ENCFF907MBG/@@download/ENCFF907MBG.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF988IOM bigBed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF907MBG 13277240 ENCODE Processing Pipeline 41cb3cc233fc26402925918f76ce6663 https://www.encodeproject.org/files/ENCFF988IOM/@@download/ENCFF988IOM.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF748KMB bed narrowPeak conservative idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF001TDO, ENCFF371ZTN, ENCFF588OJE, ENCFF907MBG 307016 ENCODE Processing Pipeline 9ddc446e8a9f307b43681792bb8ef745 https://www.encodeproject.org/files/ENCFF748KMB/@@download/ENCFF748KMB.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF336HCY bed narrowPeak optimal idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF001TDO, ENCFF371ZTN, ENCFF588OJE, ENCFF907MBG 339267 ENCODE Processing Pipeline 8fce81d8aa02bb6084375e79f029bba9 https://www.encodeproject.org/files/ENCFF336HCY/@@download/ENCFF336HCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF015FLC bigWig fold change over control ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF536QLT, ENCFF727XHW, ENCFF850EIY 1104604771 ENCODE Processing Pipeline ae41c5702067cfaf6eea75127a6ae57d https://www.encodeproject.org/files/ENCFF015FLC/@@download/ENCFF015FLC.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF468LGD bigWig signal p-value ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162SNW, ENCFF727XHW, ENCFF850EIY 1513706488 ENCODE Processing Pipeline 15dfde28f2db7a233ecf19013fb4a6d5 https://www.encodeproject.org/files/ENCFF468LGD/@@download/ENCFF468LGD.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF094GBA bigWig fold change over control ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162SNW, ENCFF727XHW, ENCFF850EIY 1701177940 ENCODE Processing Pipeline 31f13be8a4af581121bc915ec6e8fe13 https://www.encodeproject.org/files/ENCFF094GBA/@@download/ENCFF094GBA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF027VOM bigWig signal p-value ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF162SNW, ENCFF536QLT, ENCFF727XHW, ENCFF850EIY 1884857699 ENCODE Processing Pipeline 37a433320f00f78bd64787a91a787db2 https://www.encodeproject.org/files/ENCFF027VOM/@@download/ENCFF027VOM.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF600EWW bigWig fold change over control ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF162SNW, ENCFF536QLT, ENCFF727XHW, ENCFF850EIY 2007964767 ENCODE Processing Pipeline 84d5a2ea2f674f61b25a66bac683bc2f https://www.encodeproject.org/files/ENCFF600EWW/@@download/ENCFF600EWW.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF908IVQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF748KMB 683740 ENCODE Processing Pipeline e40fb6517710690da9912ffec509bb91 https://www.encodeproject.org/files/ENCFF908IVQ/@@download/ENCFF908IVQ.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF693IMS bigWig fold change over control ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF234FUH, ENCFF481HLX 1687257382 ENCODE Processing Pipeline aef6b02c155791bb08280faa1577ad5c https://www.encodeproject.org/files/ENCFF693IMS/@@download/ENCFF693IMS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF429YPI bigWig fold change over control ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF064DDT, ENCFF234FUH, ENCFF579UZO 1110041520 ENCODE Processing Pipeline be29d4320e23560a880787b6ceec4fc7 https://www.encodeproject.org/files/ENCFF429YPI/@@download/ENCFF429YPI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF657PDF bed narrowPeak conservative idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF063IHV, ENCFF419RSJ, ENCFF749VXX, ENCFF906IFC 300833 ENCODE Processing Pipeline 00763d6b66c1624418b19809037a45eb https://www.encodeproject.org/files/ENCFF657PDF/@@download/ENCFF657PDF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF496VEH bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF657PDF 674039 ENCODE Processing Pipeline 64c4b39f8d6d701bec4e60c63e4bbb57 https://www.encodeproject.org/files/ENCFF496VEH/@@download/ENCFF496VEH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF063IHV bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF234FUH, ENCFF481HLX 7282928 ENCODE Processing Pipeline 80509b727d5523cadfa8030e1b143e7f https://www.encodeproject.org/files/ENCFF063IHV/@@download/ENCFF063IHV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF204JQD bigBed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF906IFC 12397345 ENCODE Processing Pipeline 0eaaf5c77b41eee5f992c1f1fc1b2e04 https://www.encodeproject.org/files/ENCFF204JQD/@@download/ENCFF204JQD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF671SZQ bed narrowPeak optimal idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF063IHV, ENCFF419RSJ, ENCFF749VXX, ENCFF906IFC 323399 ENCODE Processing Pipeline 3e356ac4b4d1a22eb6b89d2efe4570d4 https://www.encodeproject.org/files/ENCFF671SZQ/@@download/ENCFF671SZQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF049IGT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF671SZQ 742564 ENCODE Processing Pipeline 6fbf617c6d4d48031492fbc8812a6373 https://www.encodeproject.org/files/ENCFF049IGT/@@download/ENCFF049IGT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF008SLD bigWig fold change over control ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF064DDT, ENCFF234FUH, ENCFF481HLX, ENCFF579UZO 1967056536 ENCODE Processing Pipeline f6da5a98de4630e2bb81da2d3ae45e72 https://www.encodeproject.org/files/ENCFF008SLD/@@download/ENCFF008SLD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF974KYQ bigWig signal p-value ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF234FUH, ENCFF481HLX 1387425720 ENCODE Processing Pipeline 5fd75c1a2d9de659e931459910bf060e https://www.encodeproject.org/files/ENCFF974KYQ/@@download/ENCFF974KYQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF275RQJ bigWig signal p-value ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF064DDT, ENCFF234FUH, ENCFF579UZO 1146958979 ENCODE Processing Pipeline c80a092b828ad86ab454647c7255c2cb https://www.encodeproject.org/files/ENCFF275RQJ/@@download/ENCFF275RQJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF609MMJ bigWig signal p-value ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF064DDT, ENCFF234FUH, ENCFF481HLX, ENCFF579UZO 1831515439 ENCODE Processing Pipeline a1908731e781d449582b0466ba686888 https://www.encodeproject.org/files/ENCFF609MMJ/@@download/ENCFF609MMJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF749VXX bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF064DDT, ENCFF234FUH, ENCFF579UZO 6783078 ENCODE Processing Pipeline 53847bb29a9f2a39735a46f2038da39e https://www.encodeproject.org/files/ENCFF749VXX/@@download/ENCFF749VXX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF906IFC bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 3 ENCFF064DDT, ENCFF234FUH, ENCFF481HLX, ENCFF579UZO 7287448 ENCODE Processing Pipeline 6f65ca15e9c5eacd6bc1f41d2e6e07f8 https://www.encodeproject.org/files/ENCFF906IFC/@@download/ENCFF906IFC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF063HRH bigBed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF063IHV 12389453 ENCODE Processing Pipeline 2b9929701e5747127cce66164beaa265 https://www.encodeproject.org/files/ENCFF063HRH/@@download/ENCFF063HRH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF859GLV bigBed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF749VXX 13274610 ENCODE Processing Pipeline 0ea8618a32db73309d7e6b23250d400b https://www.encodeproject.org/files/ENCFF859GLV/@@download/ENCFF859GLV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF001HUP bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HVA 762437537 John Stamatoyannopoulos, UW 8ceb808c62f9c83e8b83c93fd4c3a461 https://www.encodeproject.org/files/ENCFF001HUP/@@download/ENCFF001HUP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUQ bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HVJ 905407416 John Stamatoyannopoulos, UW d2ab5dbb4987623093854aa650f46c44 https://www.encodeproject.org/files/ENCFF001HUQ/@@download/ENCFF001HUQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUR bigBed broadPeak hotspots ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XTB 3408919 John Stamatoyannopoulos, UW c3f46e5c3e7ea137d3482258d9f9a3f3 https://www.encodeproject.org/files/ENCFF001HUR/@@download/ENCFF001HUR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUS bigBed broadPeak hotspots ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XTC 5221574 John Stamatoyannopoulos, UW 5de9085463bfd7f8caed2c0ad6d53dd5 https://www.encodeproject.org/files/ENCFF001HUS/@@download/ENCFF001HUS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUT bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XTD 1115548 John Stamatoyannopoulos, UW 900260c6ddc1aa0a9e2c1a2aca8075de https://www.encodeproject.org/files/ENCFF001HUT/@@download/ENCFF001HUT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUU bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XTE 946044 John Stamatoyannopoulos, UW f5f8fb9eacbd3bd67785405b2b65f54c https://www.encodeproject.org/files/ENCFF001HUU/@@download/ENCFF001HUU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUX bigWig raw signal ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUP 133921809 John Stamatoyannopoulos, UW 1dfe238b41d85422bcb03120fb6aa0db https://www.encodeproject.org/files/ENCFF001HUX/@@download/ENCFF001HUX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HUY bigWig raw signal ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUQ 167272986 John Stamatoyannopoulos, UW 93177c11f00e85e6ae39fc7a11a577e9 https://www.encodeproject.org/files/ENCFF001HUY/@@download/ENCFF001HUY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HVA fastq reads ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 962914326 John Stamatoyannopoulos, UW 9d3162244e8bbd5e7f639015afd216c9 https://www.encodeproject.org/files/ENCFF001HVA/@@download/ENCFF001HVA.fastq.gz Illumina Genome Analyzer /files/ENCFF001HVP/ released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001HVJ fastq reads ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 1034266209 John Stamatoyannopoulos, UW 84e110435ebd73fc9d13c3e581ab9acb https://www.encodeproject.org/files/ENCFF001HVJ/@@download/ENCFF001HVJ.fastq.gz Illumina Genome Analyzer /files/ENCFF001HVP/ released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XTB bed broadPeak hotspots ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUP 2452444 John Stamatoyannopoulos, UW 4954352012f64d5ecf98c5bf7de1ed00 https://www.encodeproject.org/files/ENCFF001XTB/@@download/ENCFF001XTB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XTC bed broadPeak hotspots ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUQ 2826068 John Stamatoyannopoulos, UW 386be1162846ea88c343478ef998abec https://www.encodeproject.org/files/ENCFF001XTC/@@download/ENCFF001XTC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XTD bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUP 790660 John Stamatoyannopoulos, UW d4ea64eaea2f05ee0678a03549222ff0 https://www.encodeproject.org/files/ENCFF001XTD/@@download/ENCFF001XTD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XTE bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUQ 647688 John Stamatoyannopoulos, UW f866d5f14382ccd11bfb96f4ca5cadb0 https://www.encodeproject.org/files/ENCFF001XTE/@@download/ENCFF001XTE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF002DDM bed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HUP, ENCFF001HUQ 955296 ENCODE Consortium Analysis Working Group bf6c3602c84abce53f0b5d69f870ce34 https://www.encodeproject.org/files/ENCFF002DDM/@@download/ENCFF002DDM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF455TTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DDM 1989713 ENCODE Consortium 275a25c99343f4fb987635efab2ba702 https://www.encodeproject.org/files/ENCFF455TTI/@@download/ENCFF455TTI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF245XWI bam unfiltered alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HVJ, ENCFF643CGH 1178323821 ENCODE Processing Pipeline 2de8d3c25710594e9e602fee729b9025 https://www.encodeproject.org/files/ENCFF245XWI/@@download/ENCFF245XWI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF775ONC bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HVA, ENCFF643CGH 638305951 ENCODE Processing Pipeline 165fadedc7dd463af7ffc2d580d17b2c https://www.encodeproject.org/files/ENCFF775ONC/@@download/ENCFF775ONC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF249ZDB bam unfiltered alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HVA, ENCFF643CGH 1051470466 ENCODE Processing Pipeline c77ea403251fc71b4817609805a192ad https://www.encodeproject.org/files/ENCFF249ZDB/@@download/ENCFF249ZDB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF219PMT bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HVJ, ENCFF643CGH 814050384 ENCODE Processing Pipeline c71b41af781e9e6e216ec821d3d4ef82 https://www.encodeproject.org/files/ENCFF219PMT/@@download/ENCFF219PMT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF004KCU bam unfiltered alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HVA, ENCFF807MUK 1048423977 ENCODE Processing Pipeline 662a0fbaadd484533f151f29b3783e13 https://www.encodeproject.org/files/ENCFF004KCU/@@download/ENCFF004KCU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF987CLO bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HVA, ENCFF807MUK 638539649 ENCODE Processing Pipeline ffdfa606b9b746a1146d2ac595156ae5 https://www.encodeproject.org/files/ENCFF987CLO/@@download/ENCFF987CLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF006RWL bam unfiltered alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HVJ, ENCFF807MUK 1174301578 ENCODE Processing Pipeline 0c0b8a8a2f84e930cf98440828b3a889 https://www.encodeproject.org/files/ENCFF006RWL/@@download/ENCFF006RWL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF568DKF bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HVJ, ENCFF807MUK 814338141 ENCODE Processing Pipeline af1d09cb5b15abec4560c9aaebce1ad7 https://www.encodeproject.org/files/ENCFF568DKF/@@download/ENCFF568DKF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF422EAJ bigWig signal p-value ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF162IBF, ENCFF568DKF 437801500 ENCODE Processing Pipeline 9b85dac9a1ce5274376ffe389fac8baa https://www.encodeproject.org/files/ENCFF422EAJ/@@download/ENCFF422EAJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF132VAE bigWig signal p-value ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF162IBF, ENCFF568DKF, ENCFF987CLO 615783347 ENCODE Processing Pipeline 7642294c8a2f2ac569d973f1e5d17db0 https://www.encodeproject.org/files/ENCFF132VAE/@@download/ENCFF132VAE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF734TRS bigWig signal p-value ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF162IBF, ENCFF987CLO 434262104 ENCODE Processing Pipeline 72d4157061ab805389d32086a4243458 https://www.encodeproject.org/files/ENCFF734TRS/@@download/ENCFF734TRS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF696JXX bigWig signal p-value ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF219PMT 563889272 ENCODE Processing Pipeline f56c48d14f384bcfed92956e54a9565f https://www.encodeproject.org/files/ENCFF696JXX/@@download/ENCFF696JXX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF788DNZ bigWig fold change over control ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF162IBF, ENCFF568DKF 422703031 ENCODE Processing Pipeline 04423b765692e71b239f38e436041837 https://www.encodeproject.org/files/ENCFF788DNZ/@@download/ENCFF788DNZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF846WYO bigWig signal p-value ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF775ONC 409620764 ENCODE Processing Pipeline 748cdb09afcacad7869a864dd99b1291 https://www.encodeproject.org/files/ENCFF846WYO/@@download/ENCFF846WYO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF416RIR bigWig fold change over control ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF162IBF, ENCFF987CLO 321136830 ENCODE Processing Pipeline c12a462328fab9337b6305855f5633b2 https://www.encodeproject.org/files/ENCFF416RIR/@@download/ENCFF416RIR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF744SJH bigWig fold change over control ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF162IBF, ENCFF568DKF, ENCFF987CLO 625721631 ENCODE Processing Pipeline 8b837df345b4970d80b1f095e71c38b0 https://www.encodeproject.org/files/ENCFF744SJH/@@download/ENCFF744SJH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF683BND bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF162IBF, ENCFF568DKF 4720509 ENCODE Processing Pipeline acacafe644a7c1d953ed936107b9ca3b https://www.encodeproject.org/files/ENCFF683BND/@@download/ENCFF683BND.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF696OZU bigWig signal p-value ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF219PMT, ENCFF775ONC 606882904 ENCODE Processing Pipeline 4e56f9e9dd8b79aafc9827d19472ae63 https://www.encodeproject.org/files/ENCFF696OZU/@@download/ENCFF696OZU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF888QDV bigWig fold change over control ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF775ONC 319531534 ENCODE Processing Pipeline c76705ba52cbd3f9a2a4f006da1c65f6 https://www.encodeproject.org/files/ENCFF888QDV/@@download/ENCFF888QDV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF047GVD bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF290QTC 10504571 ENCODE Processing Pipeline 200ca03ea03df6ca125d0a7b8293c8ce https://www.encodeproject.org/files/ENCFF047GVD/@@download/ENCFF047GVD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF290QTC bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF162IBF, ENCFF987CLO 4172588 ENCODE Processing Pipeline c83f9d4b944561148e95b446b35f20b5 https://www.encodeproject.org/files/ENCFF290QTC/@@download/ENCFF290QTC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF947TJH bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF162IBF, ENCFF568DKF, ENCFF987CLO 5212999 ENCODE Processing Pipeline 0088115db0a2e091fabd1c179fbe50b0 https://www.encodeproject.org/files/ENCFF947TJH/@@download/ENCFF947TJH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF275AVH bed narrowPeak conservative idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF290QTC, ENCFF683BND, ENCFF947TJH 759902 ENCODE Processing Pipeline da0d2fa116262fea26d27d7993b85cbd https://www.encodeproject.org/files/ENCFF275AVH/@@download/ENCFF275AVH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF839CLH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF275AVH 1326152 ENCODE Processing Pipeline 741b05fd1882afc5e3f495ea45bd85b1 https://www.encodeproject.org/files/ENCFF839CLH/@@download/ENCFF839CLH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF509NUO bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF947TJH 11690432 ENCODE Processing Pipeline a9f2f9a431cbbab617adbfd1e55c2af4 https://www.encodeproject.org/files/ENCFF509NUO/@@download/ENCFF509NUO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF576SBE bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF683BND 11241105 ENCODE Processing Pipeline 0cdece2c027d55cbe9e63d737410d798 https://www.encodeproject.org/files/ENCFF576SBE/@@download/ENCFF576SBE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF337WIE bed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF290QTC, ENCFF683BND, ENCFF947TJH 782984 ENCODE Processing Pipeline b3d90d4e894ae83cd81c99c55fc84db1 https://www.encodeproject.org/files/ENCFF337WIE/@@download/ENCFF337WIE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF637RKS bigWig fold change over control ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF219PMT 419918351 ENCODE Processing Pipeline 03ed4c40d822e935c6126d4a920f8f8a https://www.encodeproject.org/files/ENCFF637RKS/@@download/ENCFF637RKS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF761RHS bigWig fold change over control ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF219PMT, ENCFF775ONC 620684071 ENCODE Processing Pipeline 62429de974b5b4a379578cc85adc65a3 https://www.encodeproject.org/files/ENCFF761RHS/@@download/ENCFF761RHS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF342QKN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF337WIE 1356145 ENCODE Processing Pipeline e2c9b488f7138cde024c2649b8dd2cbf https://www.encodeproject.org/files/ENCFF342QKN/@@download/ENCFF342QKN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF038NKL bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF775ONC 4168658 ENCODE Processing Pipeline ecc72bbfb563f0f2394bba011585a2b2 https://www.encodeproject.org/files/ENCFF038NKL/@@download/ENCFF038NKL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF450QPN bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF219PMT, ENCFF775ONC 5232355 ENCODE Processing Pipeline 27cc00ada956de142c7af9ef379009dc https://www.encodeproject.org/files/ENCFF450QPN/@@download/ENCFF450QPN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF511QER bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF280ZQP 11227388 ENCODE Processing Pipeline 4cb17ac9b342821b5158094d7842f31c https://www.encodeproject.org/files/ENCFF511QER/@@download/ENCFF511QER.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF280ZQP bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF219PMT 4709055 ENCODE Processing Pipeline cf49a04edca656f9844af95e69449a9e https://www.encodeproject.org/files/ENCFF280ZQP/@@download/ENCFF280ZQP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF771YNU bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF038NKL 10511135 ENCODE Processing Pipeline 7006363e8f33ad9d39327c88d4d6a331 https://www.encodeproject.org/files/ENCFF771YNU/@@download/ENCFF771YNU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF670WNT bigBed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF450QPN 11719058 ENCODE Processing Pipeline 80d17323706f5c0f19a37143b73ba052 https://www.encodeproject.org/files/ENCFF670WNT/@@download/ENCFF670WNT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF498QCT bed narrowPeak conservative idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF038NKL, ENCFF280ZQP, ENCFF419RSJ, ENCFF450QPN 768369 ENCODE Processing Pipeline 775fb63e099a09f10739333a7c2b20d2 https://www.encodeproject.org/files/ENCFF498QCT/@@download/ENCFF498QCT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF779OTM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF498QCT 1340876 ENCODE Processing Pipeline bbdd825993b3671d344acb0dee6c2f0c https://www.encodeproject.org/files/ENCFF779OTM/@@download/ENCFF779OTM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF178FRI bed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF038NKL, ENCFF280ZQP, ENCFF419RSJ, ENCFF450QPN 789090 ENCODE Processing Pipeline c66a7ccb0d0d154d1fc66771dd548303 https://www.encodeproject.org/files/ENCFF178FRI/@@download/ENCFF178FRI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF887THB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF178FRI 1368928 ENCODE Processing Pipeline 2b52f991b871ba1755dcb59ba7c1ea01 https://www.encodeproject.org/files/ENCFF887THB/@@download/ENCFF887THB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF000YYM bam alignments ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YYV 356461519 Kevin Struhl, HMS 301cc708041b6fee15716493045c9573 https://www.encodeproject.org/files/ENCFF000YYM/@@download/ENCFF000YYM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YYN bam alignments ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YYW 380143046 Kevin Struhl, HMS 563c84370e36c6055c3001cc55d208cb https://www.encodeproject.org/files/ENCFF000YYN/@@download/ENCFF000YYN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YYO bigBed narrowPeak peaks ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOO 125164 Kevin Struhl, HMS 11df752b476d3122711fb26487d8da81 https://www.encodeproject.org/files/ENCFF000YYO/@@download/ENCFF000YYO.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YYP bigWig signal ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 296834302 Kevin Struhl, HMS fcba3b130a9c71fa995f0d2728c33b00 https://www.encodeproject.org/files/ENCFF000YYP/@@download/ENCFF000YYP.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YYV fastq reads ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 293503943 Kevin Struhl, HMS 630fa527c58ea892f1fd61b0e660c3b3 https://www.encodeproject.org/files/ENCFF000YYV/@@download/ENCFF000YYV.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRN/ released biological replicates with identical biosample insufficient read length ENCFF000YYW fastq reads ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 294958761 Kevin Struhl, HMS e77e076ee9018830c98d0f932580de41 https://www.encodeproject.org/files/ENCFF000YYW/@@download/ENCFF000YYW.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRC/ released biological replicates with identical biosample insufficient read length ENCFF001VOO bed narrowPeak peaks ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 19459 Kevin Struhl, HMS c5b18252c20c6aebc467656680c51d20 https://www.encodeproject.org/files/ENCFF001VOO/@@download/ENCFF001VOO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CXW bed narrowPeak optimal idr thresholded peaks ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 30224 ENCODE Consortium Analysis Working Group 9d13b60b0b83cf1043c1fa5e719e66a5 https://www.encodeproject.org/files/ENCFF002CXW/@@download/ENCFF002CXW.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF596FCL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXW 150901 ENCODE Consortium bdf6f7c1752dbdda2ccb7064cf165e71 https://www.encodeproject.org/files/ENCFF596FCL/@@download/ENCFF596FCL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF001HSM bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HSW 584620887 John Stamatoyannopoulos, UW 5e54051ff226c1e7e256ec76e3e46ccf https://www.encodeproject.org/files/ENCFF001HSM/@@download/ENCFF001HSM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSO bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSX 433532792 John Stamatoyannopoulos, UW 6197249eeb3389a83be342611afc7e89 https://www.encodeproject.org/files/ENCFF001HSO/@@download/ENCFF001HSO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSP bigBed broadPeak hotspots ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XSN 2920922 John Stamatoyannopoulos, UW 48398a6ae9490bbd42fe92a8dd1c7dde https://www.encodeproject.org/files/ENCFF001HSP/@@download/ENCFF001HSP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSQ bigBed broadPeak hotspots ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XSO 2822666 John Stamatoyannopoulos, UW 078525f1689367ad25b4242c03edd29d https://www.encodeproject.org/files/ENCFF001HSQ/@@download/ENCFF001HSQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSR bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XSP 978459 John Stamatoyannopoulos, UW f045725162a818b3cc9c12d031575eea https://www.encodeproject.org/files/ENCFF001HSR/@@download/ENCFF001HSR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSS bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XSQ 1021537 John Stamatoyannopoulos, UW 2d800d362fa150ebab7543f11083d7ea https://www.encodeproject.org/files/ENCFF001HSS/@@download/ENCFF001HSS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HST bigWig raw signal ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HSM 115341252 John Stamatoyannopoulos, UW e0d2c6f0c7d334688cdec3bf77df0bc5 https://www.encodeproject.org/files/ENCFF001HST/@@download/ENCFF001HST.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSU bigWig raw signal ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSO 88399080 John Stamatoyannopoulos, UW 671de37dd842f0269931da9a126c99be https://www.encodeproject.org/files/ENCFF001HSU/@@download/ENCFF001HSU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSW fastq reads ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 653293550 John Stamatoyannopoulos, UW 0df475cc23a9c99927cd0ac2fb29c3a6 https://www.encodeproject.org/files/ENCFF001HSW/@@download/ENCFF001HSW.fastq.gz Illumina Genome Analyzer /files/ENCFF001HTK/ released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001HSX fastq reads ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 517719876 John Stamatoyannopoulos, UW 4a7fbd9ee93fd8b50ba05ace8b0cc3a5 https://www.encodeproject.org/files/ENCFF001HSX/@@download/ENCFF001HSX.fastq.gz Illumina Genome Analyzer /files/ENCFF001HTK/ released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001XSN bed broadPeak hotspots ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HSM 1998097 John Stamatoyannopoulos, UW 30d8c715a2dfa2f4ea370f6e697cbf52 https://www.encodeproject.org/files/ENCFF001XSN/@@download/ENCFF001XSN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001XSO bed broadPeak hotspots ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSO 1961211 John Stamatoyannopoulos, UW d0fe390c8b7430ec65369624e68345a9 https://www.encodeproject.org/files/ENCFF001XSO/@@download/ENCFF001XSO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001XSP bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HSM 670740 John Stamatoyannopoulos, UW 51c19667f82b60e6f98247c4100e027e https://www.encodeproject.org/files/ENCFF001XSP/@@download/ENCFF001XSP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF001XSQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSO 709699 John Stamatoyannopoulos, UW 930a63c21338dc088e87bc2ebc231136 https://www.encodeproject.org/files/ENCFF001XSQ/@@download/ENCFF001XSQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF002DDI bed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HSM, ENCFF001HSO 911539 ENCODE Consortium Analysis Working Group d5a6de4ca1948023ffb73da452400ed2 https://www.encodeproject.org/files/ENCFF002DDI/@@download/ENCFF002DDI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF570FFW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DDI 1953365 ENCODE Consortium de65f3df8072eca1ba71279b96fc1272 https://www.encodeproject.org/files/ENCFF570FFW/@@download/ENCFF570FFW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF537KZX bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HSX, ENCFF643CGH 372900616 ENCODE Processing Pipeline 798928967ef730fb5d2623a3206f85a8 https://www.encodeproject.org/files/ENCFF537KZX/@@download/ENCFF537KZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF020SVH bam unfiltered alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HSX, ENCFF643CGH 577509311 ENCODE Processing Pipeline 0447d2baa21976587eef7c3ded9c06b4 https://www.encodeproject.org/files/ENCFF020SVH/@@download/ENCFF020SVH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF150BQN bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HSW, ENCFF643CGH 504867080 ENCODE Processing Pipeline fc08b930a42e708edbb4aab8a300b4b5 https://www.encodeproject.org/files/ENCFF150BQN/@@download/ENCFF150BQN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF704TGH bam unfiltered alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HSW, ENCFF643CGH 747093109 ENCODE Processing Pipeline 62f3bec2562ec356574e787d599ed772 https://www.encodeproject.org/files/ENCFF704TGH/@@download/ENCFF704TGH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF709KIZ bam unfiltered alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HSW, ENCFF807MUK 744455024 ENCODE Processing Pipeline cf0bd8c8781ba91826306a9cf12ceff5 https://www.encodeproject.org/files/ENCFF709KIZ/@@download/ENCFF709KIZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF976BRM bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HSX, ENCFF807MUK 373084468 ENCODE Processing Pipeline 01fb0f621928e3bd76eae2e0950cf553 https://www.encodeproject.org/files/ENCFF976BRM/@@download/ENCFF976BRM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF569PMD bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HSW, ENCFF807MUK 505080746 ENCODE Processing Pipeline f66cb7cfe817583d2dca9a718bf9c213 https://www.encodeproject.org/files/ENCFF569PMD/@@download/ENCFF569PMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF717OSP bam unfiltered alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HSX, ENCFF807MUK 576118021 ENCODE Processing Pipeline a7778d714412bd17b9adf24ea704e57f https://www.encodeproject.org/files/ENCFF717OSP/@@download/ENCFF717OSP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF802GHS bigWig signal p-value ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF150BQN, ENCFF629FKE 441786659 ENCODE Processing Pipeline 4ff51ea3f53b30303fb9a34e37668c22 https://www.encodeproject.org/files/ENCFF802GHS/@@download/ENCFF802GHS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF500FCL bigWig signal p-value ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF537KZX, ENCFF629FKE 366092924 ENCODE Processing Pipeline 1ad9da54b1014d9ab725b852a3bbe927 https://www.encodeproject.org/files/ENCFF500FCL/@@download/ENCFF500FCL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF446VYD bigWig signal p-value ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF150BQN, ENCFF537KZX, ENCFF629FKE 554165877 ENCODE Processing Pipeline 9a6e2cbae43cd71ef1fea9cf9363044f https://www.encodeproject.org/files/ENCFF446VYD/@@download/ENCFF446VYD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF734VFU bigWig fold change over control ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF150BQN, ENCFF537KZX, ENCFF629FKE 400857490 ENCODE Processing Pipeline 8c6674ee62d08a52441686e6259405d6 https://www.encodeproject.org/files/ENCFF734VFU/@@download/ENCFF734VFU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF862VBU bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF645SOL 10691452 ENCODE Processing Pipeline cd03b281fd4d90c92e51fc82e9edcda9 https://www.encodeproject.org/files/ENCFF862VBU/@@download/ENCFF862VBU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF876AOV bigWig fold change over control ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF150BQN, ENCFF629FKE 261351875 ENCODE Processing Pipeline 8abd06483139b725cd02fb647fcab8a1 https://www.encodeproject.org/files/ENCFF876AOV/@@download/ENCFF876AOV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF569EMD bigWig fold change over control ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF537KZX, ENCFF629FKE 192978128 ENCODE Processing Pipeline 4607154d923e3639fac4e561ecf0446a https://www.encodeproject.org/files/ENCFF569EMD/@@download/ENCFF569EMD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF380LJU bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF005IIT 7664035 ENCODE Processing Pipeline b5e48f4fff5bd6439b9d501ed20ebe13 https://www.encodeproject.org/files/ENCFF380LJU/@@download/ENCFF380LJU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF439OCI bed narrowPeak conservative idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF005IIT, ENCFF419RSJ, ENCFF645SOL, ENCFF823OGN 746700 ENCODE Processing Pipeline ddb6e75ad8671364c314e82e4efc938b https://www.encodeproject.org/files/ENCFF439OCI/@@download/ENCFF439OCI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF353TJD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF439OCI 1311199 ENCODE Processing Pipeline 2225f61f407205b304a9e4f16dd3f20d https://www.encodeproject.org/files/ENCFF353TJD/@@download/ENCFF353TJD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF645SOL bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF150BQN, ENCFF629FKE 4289736 ENCODE Processing Pipeline 0f27715e72c61d2deab6dfbc29852e34 https://www.encodeproject.org/files/ENCFF645SOL/@@download/ENCFF645SOL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF005IIT bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF537KZX, ENCFF629FKE 3067215 ENCODE Processing Pipeline bf9a83e5c5055cb954ab8df91217be1c https://www.encodeproject.org/files/ENCFF005IIT/@@download/ENCFF005IIT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF823OGN bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF150BQN, ENCFF537KZX, ENCFF629FKE 4697852 ENCODE Processing Pipeline 67a6053af3a55ea5b24eb330aa0e72aa https://www.encodeproject.org/files/ENCFF823OGN/@@download/ENCFF823OGN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF331NHB bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF823OGN 11276851 ENCODE Processing Pipeline aa4acb5f60907ec62f41e031a5828926 https://www.encodeproject.org/files/ENCFF331NHB/@@download/ENCFF331NHB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF032BJW bed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF005IIT, ENCFF419RSJ, ENCFF645SOL, ENCFF823OGN 771874 ENCODE Processing Pipeline 89b79f10075e62775cac787c35ad2109 https://www.encodeproject.org/files/ENCFF032BJW/@@download/ENCFF032BJW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF328EEY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF032BJW 1344558 ENCODE Processing Pipeline 2bc5dc0ecd1a06b1dae2111a295b91b2 https://www.encodeproject.org/files/ENCFF328EEY/@@download/ENCFF328EEY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF282RVT bigWig signal p-value ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF569PMD, ENCFF807YUN, ENCFF976BRM 542126816 ENCODE Processing Pipeline 8ba124fc3ade45800c2662a64e84a8ce https://www.encodeproject.org/files/ENCFF282RVT/@@download/ENCFF282RVT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF883QKB bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF807YUN, ENCFF976BRM 3070972 ENCODE Processing Pipeline 247d21ff9e5c2eea4eddd298ab499308 https://www.encodeproject.org/files/ENCFF883QKB/@@download/ENCFF883QKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF199ZDU bed narrowPeak conservative idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF232MQQ, ENCFF569PZS, ENCFF883QKB 744327 ENCODE Processing Pipeline 7984eeb5d569b7751e9c9e95c1d44362 https://www.encodeproject.org/files/ENCFF199ZDU/@@download/ENCFF199ZDU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF265UHX bigWig signal p-value ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF807YUN, ENCFF976BRM 422100459 ENCODE Processing Pipeline f8e28b9109c38c047d76a36aced88f8c https://www.encodeproject.org/files/ENCFF265UHX/@@download/ENCFF265UHX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF552QIM bigWig fold change over control ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF807YUN, ENCFF976BRM 193375082 ENCODE Processing Pipeline 34c3753a2ef175542576314e9a353604 https://www.encodeproject.org/files/ENCFF552QIM/@@download/ENCFF552QIM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF232MQQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF569PMD, ENCFF807YUN 4278177 ENCODE Processing Pipeline e54e5a4b72715fa2cc2debc8c420f6fe https://www.encodeproject.org/files/ENCFF232MQQ/@@download/ENCFF232MQQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF763APU bigWig fold change over control ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF569PMD, ENCFF807YUN, ENCFF976BRM 406122332 ENCODE Processing Pipeline e7e6fbaccd49acb5ad379f883ff9dc11 https://www.encodeproject.org/files/ENCFF763APU/@@download/ENCFF763APU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF434CUC bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF232MQQ 10671068 ENCODE Processing Pipeline e92d3938be696d47b8bd0be8c98848ea https://www.encodeproject.org/files/ENCFF434CUC/@@download/ENCFF434CUC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF369EFV bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF883QKB 7670482 ENCODE Processing Pipeline 435983c41a002049c3cccf6ba79e6062 https://www.encodeproject.org/files/ENCFF369EFV/@@download/ENCFF369EFV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF457CHB bigWig signal p-value ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF569PMD, ENCFF807YUN 367624152 ENCODE Processing Pipeline 2219b120e23d195b3145ab437ae647c3 https://www.encodeproject.org/files/ENCFF457CHB/@@download/ENCFF457CHB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF201FNS bigWig fold change over control ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF569PMD, ENCFF807YUN 261644543 ENCODE Processing Pipeline 3476ac06a6de1a338b390ff50e33c213 https://www.encodeproject.org/files/ENCFF201FNS/@@download/ENCFF201FNS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF672MLG bigBed narrowPeak conservative idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF199ZDU 1308179 ENCODE Processing Pipeline 73f908f8a502e71f9c9c795b53961e13 https://www.encodeproject.org/files/ENCFF672MLG/@@download/ENCFF672MLG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF878EAO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF738CXX 1339735 ENCODE Processing Pipeline e0a7d46200f53a7ef86da2e2aaef8a1c https://www.encodeproject.org/files/ENCFF878EAO/@@download/ENCFF878EAO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF569PZS bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF569PMD, ENCFF807YUN, ENCFF976BRM 4693787 ENCODE Processing Pipeline 9f51e222d4b6bb3ed4a8d60f0acbe397 https://www.encodeproject.org/files/ENCFF569PZS/@@download/ENCFF569PZS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF961YFA bigBed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF569PZS 11262781 ENCODE Processing Pipeline a1b0c777c7f70d5b690bd47524104d7f https://www.encodeproject.org/files/ENCFF961YFA/@@download/ENCFF961YFA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF738CXX bed narrowPeak optimal idr thresholded peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF232MQQ, ENCFF569PZS, ENCFF883QKB 768494 ENCODE Processing Pipeline 5a3c9d8e93fc9918892fa2f3ecf1426a https://www.encodeproject.org/files/ENCFF738CXX/@@download/ENCFF738CXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF000QBM bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QBZ 818726880 Richard Myers, HAIB 157723e8ab7cbfc06fb94d061c7569e6 https://www.encodeproject.org/files/ENCFF000QBM/@@download/ENCFF000QBM.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000QBO bigBed broadPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKH 1305679 Richard Myers, HAIB 8683ee678f122d328b96f55efe2aa545 https://www.encodeproject.org/files/ENCFF000QBO/@@download/ENCFF000QBO.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000QBP bigBed broadPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKI 1629054 Richard Myers, HAIB 76a4206d9f4bcff0917cb1206c7d79cd https://www.encodeproject.org/files/ENCFF000QBP/@@download/ENCFF000QBP.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000QBR bigWig raw signal ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 1 33848515 Richard Myers, HAIB f023d3a5cb5f65f493e0a39d43ecccf8 https://www.encodeproject.org/files/ENCFF000QBR/@@download/ENCFF000QBR.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample, missing derived_from ENCFF000QBS bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QCC 1275122295 Richard Myers, HAIB f60da14de4ad32835f45cc232ae01c43 https://www.encodeproject.org/files/ENCFF000QBS/@@download/ENCFF000QBS.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000QBU bigWig raw signal ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 1 77217410 Richard Myers, HAIB a386dacad8fd01a7a71a8c47a6c523bf https://www.encodeproject.org/files/ENCFF000QBU/@@download/ENCFF000QBU.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample, missing derived_from ENCFF000QBZ fastq reads ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 808289836 Richard Myers, HAIB e3e67d3e094d5c916ccf3cbeabff4657 https://www.encodeproject.org/files/ENCFF000QBZ/@@download/ENCFF000QBZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000QCC fastq reads ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1271882689 Richard Myers, HAIB 85666be4ae98fb197384f891f6b4cfe5 https://www.encodeproject.org/files/ENCFF000QCC/@@download/ENCFF000QCC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEU/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF001UKH bed broadPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 1 717099 Richard Myers, HAIB da0ebd35f57b33b05d05393da1f33a60 https://www.encodeproject.org/files/ENCFF001UKH/@@download/ENCFF001UKH.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UKI bed broadPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 1 1043464 Richard Myers, HAIB d6fab7be071c8d4b24ff4f389efd1250 https://www.encodeproject.org/files/ENCFF001UKI/@@download/ENCFF001UKI.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CMC bed narrowPeak optimal idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1187908 ENCODE Consortium Analysis Working Group ad3cebc9cc63d00128334a3f1539e7af https://www.encodeproject.org/files/ENCFF002CMC/@@download/ENCFF002CMC.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample, missing derived_from ENCFF335HMQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMC 2937336 ENCODE Consortium 8fbce0bf5524ec88c04436e0c8e32a09 https://www.encodeproject.org/files/ENCFF335HMQ/@@download/ENCFF335HMQ.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF393FKW bam unfiltered alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBZ, ENCFF643CGH 1029801434 ENCODE Processing Pipeline b6872ae7dd9d23730bace1de4b8119ee https://www.encodeproject.org/files/ENCFF393FKW/@@download/ENCFF393FKW.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF178VEA bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBZ, ENCFF643CGH 481515882 ENCODE Processing Pipeline 8c11b01b11fba5b2e00ad9553b0d30ad https://www.encodeproject.org/files/ENCFF178VEA/@@download/ENCFF178VEA.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF535RJW bam unfiltered alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCC, ENCFF643CGH 1598125550 ENCODE Processing Pipeline e2e3c88bce29aca08752b1e725389ffe https://www.encodeproject.org/files/ENCFF535RJW/@@download/ENCFF535RJW.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF797FEY bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCC, ENCFF643CGH 971792096 ENCODE Processing Pipeline 8a018a2c20ebe932ee90cc5faae07ed3 https://www.encodeproject.org/files/ENCFF797FEY/@@download/ENCFF797FEY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF825FLR bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBZ, ENCFF807MUK 481989402 ENCODE Processing Pipeline 7fc703b190f76e02ff8ec58489d4b082 https://www.encodeproject.org/files/ENCFF825FLR/@@download/ENCFF825FLR.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF106ZVG bam unfiltered alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBZ, ENCFF807MUK 1027257145 ENCODE Processing Pipeline b7c4148db749b0d662d6bd948968f468 https://www.encodeproject.org/files/ENCFF106ZVG/@@download/ENCFF106ZVG.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF715OQW bam unfiltered alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCC, ENCFF807MUK 1595301012 ENCODE Processing Pipeline 5b0bb7cd806d3bc7cb2b863bfffadf1a https://www.encodeproject.org/files/ENCFF715OQW/@@download/ENCFF715OQW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF112YUX bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCC, ENCFF807MUK 972562441 ENCODE Processing Pipeline a61a001d48f6961b8e41a159a2bac1a3 https://www.encodeproject.org/files/ENCFF112YUX/@@download/ENCFF112YUX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF656MEH bigWig signal p-value ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178VEA, ENCFF913HVS 353932059 ENCODE Processing Pipeline fab6070fd5cfbfe8846c0760d4115034 https://www.encodeproject.org/files/ENCFF656MEH/@@download/ENCFF656MEH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF489FFF bigWig signal p-value ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234NVU, ENCFF797FEY, ENCFF913HVS 647192205 ENCODE Processing Pipeline 21f67eecae2c17c1eab3f89f7976b51c https://www.encodeproject.org/files/ENCFF489FFF/@@download/ENCFF489FFF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF043FNE bigWig signal p-value ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178VEA, ENCFF234NVU, ENCFF797FEY, ENCFF913HVS 686224753 ENCODE Processing Pipeline a28aae1dc7372d288179b27c3492bf48 https://www.encodeproject.org/files/ENCFF043FNE/@@download/ENCFF043FNE.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF049FYV bigWig fold change over control ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178VEA, ENCFF913HVS 195143996 ENCODE Processing Pipeline 2c49dcec0f44c36e57c0c9a60526284e https://www.encodeproject.org/files/ENCFF049FYV/@@download/ENCFF049FYV.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF539BFH bigWig fold change over control ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234NVU, ENCFF797FEY, ENCFF913HVS 445640730 ENCODE Processing Pipeline 869d3e7c5d4bb133d421b739d14ab897 https://www.encodeproject.org/files/ENCFF539BFH/@@download/ENCFF539BFH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF070ERF bigWig fold change over control ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178VEA, ENCFF234NVU, ENCFF797FEY, ENCFF913HVS 584396899 ENCODE Processing Pipeline ddd64a870c3094418fc8d313458e4075 https://www.encodeproject.org/files/ENCFF070ERF/@@download/ENCFF070ERF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF335ASE bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178VEA, ENCFF913HVS 5205652 ENCODE Processing Pipeline 99b677e39d8e1bb71cf78b6c60adf7f3 https://www.encodeproject.org/files/ENCFF335ASE/@@download/ENCFF335ASE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF619NIZ bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234NVU, ENCFF797FEY, ENCFF913HVS 6453589 ENCODE Processing Pipeline 51e6a3dc883808afb2060f66baf0b69a https://www.encodeproject.org/files/ENCFF619NIZ/@@download/ENCFF619NIZ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF933FSJ bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178VEA, ENCFF234NVU, ENCFF797FEY, ENCFF913HVS 6711034 ENCODE Processing Pipeline 4b9450419227b060b82892d3876f7cef https://www.encodeproject.org/files/ENCFF933FSJ/@@download/ENCFF933FSJ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF770HSR bigBed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF335ASE 12769179 ENCODE Processing Pipeline a8271e139842ce8b43705f0a627f6e80 https://www.encodeproject.org/files/ENCFF770HSR/@@download/ENCFF770HSR.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF706JQB bigBed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF619NIZ 12824313 ENCODE Processing Pipeline a4f40b114e767cc6dc5ed4d9c2f04621 https://www.encodeproject.org/files/ENCFF706JQB/@@download/ENCFF706JQB.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF987SRA bigBed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF933FSJ 12940768 ENCODE Processing Pipeline 61bd3af1d05258026dec551b51958508 https://www.encodeproject.org/files/ENCFF987SRA/@@download/ENCFF987SRA.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF448ZSO bed narrowPeak conservative idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF335ASE, ENCFF419RSJ, ENCFF619NIZ, ENCFF933FSJ 909409 ENCODE Processing Pipeline 33fcc6e809237c1fb1bc3f66d008880e https://www.encodeproject.org/files/ENCFF448ZSO/@@download/ENCFF448ZSO.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF160BBX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF448ZSO 1639098 ENCODE Processing Pipeline e0e3a96e929082a930767ca68a6b1411 https://www.encodeproject.org/files/ENCFF160BBX/@@download/ENCFF160BBX.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF900NVQ bed narrowPeak optimal idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF335ASE, ENCFF419RSJ, ENCFF619NIZ, ENCFF933FSJ 999894 ENCODE Processing Pipeline 601ed3798660585b840d49abb2d4cb1c https://www.encodeproject.org/files/ENCFF900NVQ/@@download/ENCFF900NVQ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF717PDB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF900NVQ 1772636 ENCODE Processing Pipeline c1bdc59ce9684cede555512c0952f960 https://www.encodeproject.org/files/ENCFF717PDB/@@download/ENCFF717PDB.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF771VDS bigWig signal p-value ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701KUD, ENCFF825FLR 357770019 ENCODE Processing Pipeline fa3deb958c5a5e494ed31d1a1f9b4df5 https://www.encodeproject.org/files/ENCFF771VDS/@@download/ENCFF771VDS.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF954VKC bigWig fold change over control ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701KUD, ENCFF825FLR 196830304 ENCODE Processing Pipeline 7f9f6e5384fbaf68e531378a1365abf2 https://www.encodeproject.org/files/ENCFF954VKC/@@download/ENCFF954VKC.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF968MQM bigWig signal p-value ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD 629608306 ENCODE Processing Pipeline 6fed3809317484a12ec50029016c944a https://www.encodeproject.org/files/ENCFF968MQM/@@download/ENCFF968MQM.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF462HMW bigWig signal p-value ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD, ENCFF825FLR 833517970 ENCODE Processing Pipeline 123e73eaef438fac32be310346d87957 https://www.encodeproject.org/files/ENCFF462HMW/@@download/ENCFF462HMW.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF529SKC bigWig fold change over control ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD 443956536 ENCODE Processing Pipeline 31033e3409b8b970cb69fdbbf48d7250 https://www.encodeproject.org/files/ENCFF529SKC/@@download/ENCFF529SKC.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF626PTB bigWig fold change over control ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD, ENCFF825FLR 584049188 ENCODE Processing Pipeline a29852c1ccad168dfc080d613cee229c https://www.encodeproject.org/files/ENCFF626PTB/@@download/ENCFF626PTB.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF280XEL bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701KUD, ENCFF825FLR 5191119 ENCODE Processing Pipeline e509edea4142432ef5a6bd1bb6fcb50b https://www.encodeproject.org/files/ENCFF280XEL/@@download/ENCFF280XEL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF221GAR bed narrowPeak conservative idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF280XEL, ENCFF609KEQ, ENCFF922CBN 920952 ENCODE Processing Pipeline 868ea20b178e66b35ede2c76a99b2aa0 https://www.encodeproject.org/files/ENCFF221GAR/@@download/ENCFF221GAR.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF296VTK bigBed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF280XEL 12748053 ENCODE Processing Pipeline 81c7dd99c27573341ee30049cdeb7c4a https://www.encodeproject.org/files/ENCFF296VTK/@@download/ENCFF296VTK.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF259GEV bigBed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF609KEQ 12952945 ENCODE Processing Pipeline a5bb351ac4c6bf85aff5fb226ecbecf7 https://www.encodeproject.org/files/ENCFF259GEV/@@download/ENCFF259GEV.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF222CDN bigBed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF922CBN 13000549 ENCODE Processing Pipeline 7c081bda27185f05cb388d2b8c6bc5be https://www.encodeproject.org/files/ENCFF222CDN/@@download/ENCFF222CDN.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF609KEQ bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD 6562166 ENCODE Processing Pipeline c9ecb892a86a5097da79006baf7c5a7a https://www.encodeproject.org/files/ENCFF609KEQ/@@download/ENCFF609KEQ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF922CBN bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD, ENCFF825FLR 6764862 ENCODE Processing Pipeline a7de17e2d20b0eec93fe9649423df813 https://www.encodeproject.org/files/ENCFF922CBN/@@download/ENCFF922CBN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF935WRY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF221GAR 1657207 ENCODE Processing Pipeline 27aed69c3f80466d34248bd318647578 https://www.encodeproject.org/files/ENCFF935WRY/@@download/ENCFF935WRY.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF422NGZ bed narrowPeak optimal idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF280XEL, ENCFF609KEQ, ENCFF922CBN 1024235 ENCODE Processing Pipeline 747de7bd157b52cb8b23dbf18917e54a https://www.encodeproject.org/files/ENCFF422NGZ/@@download/ENCFF422NGZ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF524MYI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF422NGZ 1807800 ENCODE Processing Pipeline cb0898b0a1cd3f737130bdaeb8b261e0 https://www.encodeproject.org/files/ENCFF524MYI/@@download/ENCFF524MYI.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000RES bam alignments ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RFF 698271268 Richard Myers, HAIB 98ff06902c6b439e23f0a97383fde914 https://www.encodeproject.org/files/ENCFF000RES/@@download/ENCFF000RES.bam hg19 released biological replicates with identical biosample ENCFF000RET bigBed broadPeak peaks ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UQP 139150 Richard Myers, HAIB 64647d376a314867b72f6291138c77c9 https://www.encodeproject.org/files/ENCFF000RET/@@download/ENCFF000RET.bigBed hg19 released biological replicates with identical biosample ENCFF000REU bigBed broadPeak peaks ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UQQ 107334 Richard Myers, HAIB 4a779ba862c76c0ff54b789d98ee993c https://www.encodeproject.org/files/ENCFF000REU/@@download/ENCFF000REU.bigBed hg19 released biological replicates with identical biosample ENCFF000REV bam alignments ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RFG 1533449466 Richard Myers, HAIB 0f486d07a17ca566242f76f3942ae195 https://www.encodeproject.org/files/ENCFF000REV/@@download/ENCFF000REV.bam hg19 released biological replicates with identical biosample ENCFF000REW bigWig raw signal ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 1 1 157383898 Richard Myers, HAIB 96b5a05b9dbc216acc5e247cbdd38599 https://www.encodeproject.org/files/ENCFF000REW/@@download/ENCFF000REW.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000REY bigWig raw signal ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 2 1 86706204 Richard Myers, HAIB 3bd80c594545ec757b88670b61ee12b1 https://www.encodeproject.org/files/ENCFF000REY/@@download/ENCFF000REY.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RFF fastq reads ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 703961893 Richard Myers, HAIB c29a5122b31cd368ea1d8b64709ee675 https://www.encodeproject.org/files/ENCFF000RFF/@@download/ENCFF000RFF.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF000RFG fastq reads ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1551296942 Richard Myers, HAIB 0540ca44c5edd4579e8acee65e8ad831 https://www.encodeproject.org/files/ENCFF000RFG/@@download/ENCFF000RFG.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UQP bed broadPeak peaks ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 1 1 54627 Richard Myers, HAIB 4e8c46e8aed30f874a5ad919fc9cf570 https://www.encodeproject.org/files/ENCFF001UQP/@@download/ENCFF001UQP.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UQQ bed broadPeak peaks ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 2 1 30618 Richard Myers, HAIB bf0fd7d394b045575ec0f8485aa1fd92 https://www.encodeproject.org/files/ENCFF001UQQ/@@download/ENCFF001UQQ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NWF bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NWT 824439542 Richard Myers, HAIB 4e904d1bb23042695bdd045f2cbc46f9 https://www.encodeproject.org/files/ENCFF000NWF/@@download/ENCFF000NWF.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWH bigBed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXG 551037 Richard Myers, HAIB 8eb85edb685f72464029ec6c9a465f91 https://www.encodeproject.org/files/ENCFF000NWH/@@download/ENCFF000NWH.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWI bigBed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXH 628345 Richard Myers, HAIB e1a63318adf5ca156c6f895c161a1d1e https://www.encodeproject.org/files/ENCFF000NWI/@@download/ENCFF000NWI.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWJ bigWig raw signal ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 16120086 Richard Myers, HAIB 1e5f4068cd8c3603a6f55f64f8296175 https://www.encodeproject.org/files/ENCFF000NWJ/@@download/ENCFF000NWJ.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NWK bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NWV 967009304 Richard Myers, HAIB 012abc81238109e9790a9024328d08ff https://www.encodeproject.org/files/ENCFF000NWK/@@download/ENCFF000NWK.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000NWL bigWig raw signal ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 21467479 Richard Myers, HAIB 7a6588eb647cbcc29ff80c1254b31bad https://www.encodeproject.org/files/ENCFF000NWL/@@download/ENCFF000NWL.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NWT fastq reads ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 870825486 Richard Myers, HAIB e011367659917a655f073ac80ee4f91e https://www.encodeproject.org/files/ENCFF000NWT/@@download/ENCFF000NWT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, low read depth biological replicates with identical biosample ENCFF000NWV fastq reads ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1035627302 Richard Myers, HAIB ff1932701763aee22984b5a951febd83 https://www.encodeproject.org/files/ENCFF000NWV/@@download/ENCFF000NWV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length, low read depth biological replicates with identical biosample ENCFF001TXG bed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 1 339348 Richard Myers, HAIB 03aceacdeaa397aaf3b9aac9965c4123 https://www.encodeproject.org/files/ENCFF001TXG/@@download/ENCFF001TXG.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TXH bed broadPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 1 401778 Richard Myers, HAIB 0644524f5f3062c61fa14e97648187ad https://www.encodeproject.org/files/ENCFF001TXH/@@download/ENCFF001TXH.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CHB bed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 358811 ENCODE Consortium Analysis Working Group 9e2708daf73a8a5e361e6ef88e8bb464 https://www.encodeproject.org/files/ENCFF002CHB/@@download/ENCFF002CHB.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF307HMP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHB 817179 ENCODE Consortium 2910e316232417ddb43ae7763cbc588c https://www.encodeproject.org/files/ENCFF307HMP/@@download/ENCFF307HMP.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF028SCM bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF643CGH 1113335001 ENCODE Processing Pipeline 5a79c4a2fb825627512cc27291934e6f https://www.encodeproject.org/files/ENCFF028SCM/@@download/ENCFF028SCM.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF240MQI bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF643CGH 644643687 ENCODE Processing Pipeline 1c20ff0def323dcbaf162273da622bc1 https://www.encodeproject.org/files/ENCFF240MQI/@@download/ENCFF240MQI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF888PAI bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF643CGH 766004482 ENCODE Processing Pipeline 9a381fee1a0f451d1c09fcdd2391b548 https://www.encodeproject.org/files/ENCFF888PAI/@@download/ENCFF888PAI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF358CPI bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF643CGH 1315266088 ENCODE Processing Pipeline daf751177b0c51f3df3ea7d06107d44c https://www.encodeproject.org/files/ENCFF358CPI/@@download/ENCFF358CPI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF077CHK bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF807MUK 1110036095 ENCODE Processing Pipeline 0ada5903dc30146faccc8a75547cf27e https://www.encodeproject.org/files/ENCFF077CHK/@@download/ENCFF077CHK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF356JEO bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF807MUK 640952733 ENCODE Processing Pipeline 8e463d84ea86834b6494196537061722 https://www.encodeproject.org/files/ENCFF356JEO/@@download/ENCFF356JEO.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF056SZK bam unfiltered alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF807MUK 1310788835 ENCODE Processing Pipeline d333e04eedf89604e6d052cb94e3b2d5 https://www.encodeproject.org/files/ENCFF056SZK/@@download/ENCFF056SZK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF732SBB bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF807MUK 760267172 ENCODE Processing Pipeline 5ee214365c432e750a39372692e2a021 https://www.encodeproject.org/files/ENCFF732SBB/@@download/ENCFF732SBB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF224TTO bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240MQI, ENCFF562HPN 511164791 ENCODE Processing Pipeline b8127a2bdd4a925a705c4a4462ee5271 https://www.encodeproject.org/files/ENCFF224TTO/@@download/ENCFF224TTO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF027BBC bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF888PAI 430013921 ENCODE Processing Pipeline b9fd321d59ee4cc4d88c194b5c898503 https://www.encodeproject.org/files/ENCFF027BBC/@@download/ENCFF027BBC.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF511TJU bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF888PAI 343890248 ENCODE Processing Pipeline f8ee721a448c5652e42d63a3ba2f558b https://www.encodeproject.org/files/ENCFF511TJU/@@download/ENCFF511TJU.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF255OTO bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF240MQI, ENCFF438FFV, ENCFF562HPN, ENCFF888PAI 862095165 ENCODE Processing Pipeline 69b29b498ce89f9e4e5141ecc3e7a139 https://www.encodeproject.org/files/ENCFF255OTO/@@download/ENCFF255OTO.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF073JYX bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240MQI, ENCFF562HPN 309702919 ENCODE Processing Pipeline 13bca6f390a90f2e92bcea16d90120de https://www.encodeproject.org/files/ENCFF073JYX/@@download/ENCFF073JYX.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF185INW bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF240MQI, ENCFF438FFV, ENCFF562HPN, ENCFF888PAI 741051636 ENCODE Processing Pipeline 7cd7a49509bf7e13c84545f6ce5dac1f https://www.encodeproject.org/files/ENCFF185INW/@@download/ENCFF185INW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF944GNM bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240MQI, ENCFF562HPN 5067106 ENCODE Processing Pipeline 5468ae53970173483242c32e37204766 https://www.encodeproject.org/files/ENCFF944GNM/@@download/ENCFF944GNM.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF089TUG bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438FFV, ENCFF888PAI 4929526 ENCODE Processing Pipeline d927d47628609ca867531933148023ed https://www.encodeproject.org/files/ENCFF089TUG/@@download/ENCFF089TUG.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF119FVK bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF944GNM 10870010 ENCODE Processing Pipeline 90ed2f5892e3789e80bfcb62f1d3a68f https://www.encodeproject.org/files/ENCFF119FVK/@@download/ENCFF119FVK.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF826OPY bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF240MQI, ENCFF438FFV, ENCFF562HPN, ENCFF888PAI 6014158 ENCODE Processing Pipeline 5ac5fbf1d8a09abf546a16f47263182d https://www.encodeproject.org/files/ENCFF826OPY/@@download/ENCFF826OPY.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF588FKS bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089TUG 10699875 ENCODE Processing Pipeline 8f65eb9e0cf67b32551efd5342c75be2 https://www.encodeproject.org/files/ENCFF588FKS/@@download/ENCFF588FKS.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF134TRQ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF826OPY 13201388 ENCODE Processing Pipeline 042f69e631882344922c67f7ac84969e https://www.encodeproject.org/files/ENCFF134TRQ/@@download/ENCFF134TRQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF393ZEE bed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089TUG, ENCFF419RSJ, ENCFF826OPY, ENCFF944GNM 318424 ENCODE Processing Pipeline 12b4d328c97c1fb18048d745b51bc8bc https://www.encodeproject.org/files/ENCFF393ZEE/@@download/ENCFF393ZEE.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF049SZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF720YMW 669895 ENCODE Processing Pipeline 6effdadce16dcad00018448622e26c9d https://www.encodeproject.org/files/ENCFF049SZR/@@download/ENCFF049SZR.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF865RMQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393ZEE 603919 ENCODE Processing Pipeline e5af43cd2fd3b2cdb796cabf28467328 https://www.encodeproject.org/files/ENCFF865RMQ/@@download/ENCFF865RMQ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF720YMW bed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF089TUG, ENCFF419RSJ, ENCFF826OPY, ENCFF944GNM 366567 ENCODE Processing Pipeline ace1fb5b44c14612084d7bf52d7561bd https://www.encodeproject.org/files/ENCFF720YMW/@@download/ENCFF720YMW.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF587YRC bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 312336589 ENCODE Processing Pipeline 768d6f54235b454c974e4a2da3b6f855 https://www.encodeproject.org/files/ENCFF587YRC/@@download/ENCFF587YRC.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF717AEH bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 439213255 ENCODE Processing Pipeline 63166a794af738abe3b150d5da9ce15f https://www.encodeproject.org/files/ENCFF717AEH/@@download/ENCFF717AEH.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF291ILI bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356JEO, ENCFF732SBB, ENCFF837IOW, ENCFF958RTR 747941053 ENCODE Processing Pipeline 3e7f839e5aabc39858497f0201bcfcc2 https://www.encodeproject.org/files/ENCFF291ILI/@@download/ENCFF291ILI.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF379LXD bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 5008996 ENCODE Processing Pipeline 844d8d751abcaff398aa423ae8a993e9 https://www.encodeproject.org/files/ENCFF379LXD/@@download/ENCFF379LXD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF438FXZ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379LXD 10804793 ENCODE Processing Pipeline c3ac5771832b972943d09a4e9205f017 https://www.encodeproject.org/files/ENCFF438FXZ/@@download/ENCFF438FXZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF708VKT bed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF379LXD, ENCFF713DPM, ENCFF947MLS 315101 ENCODE Processing Pipeline b6b0d325ed2169805f43683f229211e5 https://www.encodeproject.org/files/ENCFF708VKT/@@download/ENCFF708VKT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF780CPZ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF947MLS 10719358 ENCODE Processing Pipeline 0e5d3f55a8199564c39c7b18d6093d1c https://www.encodeproject.org/files/ENCFF780CPZ/@@download/ENCFF780CPZ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF441OMT bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 421472820 ENCODE Processing Pipeline c34b5b0fe74dc2729ef546236eae84fa https://www.encodeproject.org/files/ENCFF441OMT/@@download/ENCFF441OMT.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF226EOB bigWig fold change over control ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 346186898 ENCODE Processing Pipeline a3a4be45abe11c3441e6203b142b9e8d https://www.encodeproject.org/files/ENCFF226EOB/@@download/ENCFF226EOB.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF620GIC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF708VKT 598837 ENCODE Processing Pipeline ab6ef2ee9ee967f78bbb140889b0a9b7 https://www.encodeproject.org/files/ENCFF620GIC/@@download/ENCFF620GIC.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF472MAK bigWig signal p-value ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356JEO, ENCFF732SBB, ENCFF837IOW, ENCFF958RTR 954824806 ENCODE Processing Pipeline af994e164aacf7712ac1eb3bd36f6329 https://www.encodeproject.org/files/ENCFF472MAK/@@download/ENCFF472MAK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF947MLS bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 4944540 ENCODE Processing Pipeline 23cacd9104eb0e6ac4bddb8c98fccb78 https://www.encodeproject.org/files/ENCFF947MLS/@@download/ENCFF947MLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF713DPM bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356JEO, ENCFF732SBB, ENCFF837IOW, ENCFF958RTR 6017568 ENCODE Processing Pipeline 159b051003d96a1c0f806650743779cb https://www.encodeproject.org/files/ENCFF713DPM/@@download/ENCFF713DPM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF138SZJ bigBed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF713DPM 13192116 ENCODE Processing Pipeline 596f6016236cc8a58952e3d07345ce3d https://www.encodeproject.org/files/ENCFF138SZJ/@@download/ENCFF138SZJ.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF391DVL bed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF379LXD, ENCFF713DPM, ENCFF947MLS 370386 ENCODE Processing Pipeline 0a0c836f56faf01dc5a94b69720edee9 https://www.encodeproject.org/files/ENCFF391DVL/@@download/ENCFF391DVL.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF151JVV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF391DVL 673505 ENCODE Processing Pipeline 2146a52a28091ce7384ba38ac12f13f5 https://www.encodeproject.org/files/ENCFF151JVV/@@download/ENCFF151JVV.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000XBG bam alignments ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBO 405142098 Michael Snyder, Stanford c5e9b1db9b9fbe52d18824fe4c1469b4 https://www.encodeproject.org/files/ENCFF000XBG/@@download/ENCFF000XBG.bam hg19 released low read length biological replicates with identical biosample ENCFF000XBH bam alignments ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBN 387894767 Michael Snyder, Stanford a6c0d2651f6d1751be48f2cfe61786c3 https://www.encodeproject.org/files/ENCFF000XBH/@@download/ENCFF000XBH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XBI bigBed narrowPeak peaks ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIA 4445259 Michael Snyder, Stanford a6152af730482eefbbf1e9317948028b https://www.encodeproject.org/files/ENCFF000XBI/@@download/ENCFF000XBI.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XBM bigWig signal ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 289783504 Michael Snyder, Stanford efd80f22652c2c844b4f08bfdf081799 https://www.encodeproject.org/files/ENCFF000XBM/@@download/ENCFF000XBM.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XBN fastq reads ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 780914804 Michael Snyder, Stanford f59d6a39a805b95dc94cc63fe9bf0070 https://www.encodeproject.org/files/ENCFF000XBN/@@download/ENCFF000XBN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XBO fastq reads ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 966687948 Michael Snyder, Stanford bd464b67909f7cbaa600e6c67c20fd5e https://www.encodeproject.org/files/ENCFF000XBO/@@download/ENCFF000XBO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VIA bed narrowPeak peaks ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1812806 Michael Snyder, Stanford 672fefa1e7f81bb8998970ad84ef4cc6 https://www.encodeproject.org/files/ENCFF001VIA/@@download/ENCFF001VIA.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CSA bed narrowPeak optimal idr thresholded peaks ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1284848 ENCODE Consortium Analysis Working Group f85716cb7fe3fda2d73d895e930e47c2 https://www.encodeproject.org/files/ENCFF002CSA/@@download/ENCFF002CSA.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF551UDE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSA 2962399 ENCODE Consortium 44fddabbdb991a5a6f04c0c9bf1e8b14 https://www.encodeproject.org/files/ENCFF551UDE/@@download/ENCFF551UDE.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000PJM bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PJT 482798886 Richard Myers, HAIB 15ae45761932e215b37d9e82257f1b30 https://www.encodeproject.org/files/ENCFF000PJM/@@download/ENCFF000PJM.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PJN bigBed broadPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UGG 706227 Richard Myers, HAIB b3f6bc73cac7a2ab8824cc71fc113e57 https://www.encodeproject.org/files/ENCFF000PJN/@@download/ENCFF000PJN.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PJO bigBed broadPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UGH 678002 Richard Myers, HAIB cb44ce64e05d02aec1e441b55355509f https://www.encodeproject.org/files/ENCFF000PJO/@@download/ENCFF000PJO.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PJP bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PJX 692271777 Richard Myers, HAIB a419984247d09a545647eacf4d4ddc71 https://www.encodeproject.org/files/ENCFF000PJP/@@download/ENCFF000PJP.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PJR bigWig raw signal ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 1 17781411 Richard Myers, HAIB 5fa9eee0b050b3af1b699d14ed99d26d https://www.encodeproject.org/files/ENCFF000PJR/@@download/ENCFF000PJR.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000PJS bigWig raw signal ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 1 14559523 Richard Myers, HAIB 4970d1e9d6b3a3647a23130bdbdfce07 https://www.encodeproject.org/files/ENCFF000PJS/@@download/ENCFF000PJS.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000PJT fastq reads ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 352280469 Richard Myers, HAIB 7db8e124cceff5fc5b728fffa64a31ce https://www.encodeproject.org/files/ENCFF000PJT/@@download/ENCFF000PJT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PJX fastq reads ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 711507188 Richard Myers, HAIB 1c8074ce486b73d4825fc94f12bf0922 https://www.encodeproject.org/files/ENCFF000PJX/@@download/ENCFF000PJX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POU/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UGG bed broadPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 1 413698 Richard Myers, HAIB 63de7c204f862a449235cd0861ca4ca0 https://www.encodeproject.org/files/ENCFF001UGG/@@download/ENCFF001UGG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UGH bed broadPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 1 384472 Richard Myers, HAIB a5e01f078393e61942391ce564ad094e https://www.encodeproject.org/files/ENCFF001UGH/@@download/ENCFF001UGH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CKN bed narrowPeak optimal idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 407127 ENCODE Consortium Analysis Working Group a3fd51799799bc21f0c372816af6bda5 https://www.encodeproject.org/files/ENCFF002CKN/@@download/ENCFF002CKN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF782WFL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKN 780150 ENCODE Consortium bbfabe8092191bd95b606e7857c5a1a8 https://www.encodeproject.org/files/ENCFF782WFL/@@download/ENCFF782WFL.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF392NEF bam unfiltered alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJT, ENCFF643CGH 440336222 ENCODE Processing Pipeline 9bd85e7da8b461c4bc553fd7deb0c7cf https://www.encodeproject.org/files/ENCFF392NEF/@@download/ENCFF392NEF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF305JRI bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJT, ENCFF643CGH 193598114 ENCODE Processing Pipeline bc6b06a79ecc0c490c443577c6b5a3e9 https://www.encodeproject.org/files/ENCFF305JRI/@@download/ENCFF305JRI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF578NKF bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJX, ENCFF643CGH 238609627 ENCODE Processing Pipeline f50949a2d3611c1fd23cad361869b7cf https://www.encodeproject.org/files/ENCFF578NKF/@@download/ENCFF578NKF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF048IWW bam unfiltered alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJX, ENCFF643CGH 810273449 ENCODE Processing Pipeline 7c15016950e026b5e380c89ff6f0e748 https://www.encodeproject.org/files/ENCFF048IWW/@@download/ENCFF048IWW.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF926CAL bam unfiltered alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJT, ENCFF807MUK 439290517 ENCODE Processing Pipeline 3112355258dc0b10668107bfdb4b19ef https://www.encodeproject.org/files/ENCFF926CAL/@@download/ENCFF926CAL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF479RIQ bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJT, ENCFF807MUK 193692144 ENCODE Processing Pipeline f79e7898b902fc85693051ab96274ca7 https://www.encodeproject.org/files/ENCFF479RIQ/@@download/ENCFF479RIQ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF820JDU bam unfiltered alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJX, ENCFF807MUK 809139196 ENCODE Processing Pipeline 8283ad315ec49d42d14b03438288db94 https://www.encodeproject.org/files/ENCFF820JDU/@@download/ENCFF820JDU.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF802IIV bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJX, ENCFF807MUK 238701190 ENCODE Processing Pipeline de8eaca80772100b5821d78fc450b09f https://www.encodeproject.org/files/ENCFF802IIV/@@download/ENCFF802IIV.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF131FBN bigWig signal p-value ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF305JRI, ENCFF578NKF, ENCFF943DZB 548468741 ENCODE Processing Pipeline 7bcd635f47676b5637781cf9aa00d4b4 https://www.encodeproject.org/files/ENCFF131FBN/@@download/ENCFF131FBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF175PGP bigWig fold change over control ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF305JRI, ENCFF943DZB 173912949 ENCODE Processing Pipeline 21ea6e9b46c2e81ca1df1cbc85624ee2 https://www.encodeproject.org/files/ENCFF175PGP/@@download/ENCFF175PGP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF171FLI bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF578NKF, ENCFF943DZB 2949299 ENCODE Processing Pipeline 42105d07f610f6e7fc1aa65bb7bd1906 https://www.encodeproject.org/files/ENCFF171FLI/@@download/ENCFF171FLI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF083YPX bigBed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF659YMN 10659480 ENCODE Processing Pipeline 4d6dc9bf6df9e8d7a6d0e7feb231409e https://www.encodeproject.org/files/ENCFF083YPX/@@download/ENCFF083YPX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF440ZDK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF072CXB 734377 ENCODE Processing Pipeline 2368328c62252703b877eceacbd9e7fd https://www.encodeproject.org/files/ENCFF440ZDK/@@download/ENCFF440ZDK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF611EVM bigWig signal p-value ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF578NKF, ENCFF943DZB 507207369 ENCODE Processing Pipeline 1f437c5e7f8ec42e9044f1e5df17a775 https://www.encodeproject.org/files/ENCFF611EVM/@@download/ENCFF611EVM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF967QFE bigWig signal p-value ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF305JRI, ENCFF943DZB 507740584 ENCODE Processing Pipeline c195a7b9b435b62b8b93f655558a8638 https://www.encodeproject.org/files/ENCFF967QFE/@@download/ENCFF967QFE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF080FZD bigWig fold change over control ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF305JRI, ENCFF578NKF, ENCFF943DZB 321471499 ENCODE Processing Pipeline 4598ecf440d28209ea3a48a545c16882 https://www.encodeproject.org/files/ENCFF080FZD/@@download/ENCFF080FZD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF659YMN bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF285LVE, ENCFF305JRI, ENCFF578NKF, ENCFF943DZB 4918167 ENCODE Processing Pipeline df4a994a7a0fcd9b70d579a02cd30e49 https://www.encodeproject.org/files/ENCFF659YMN/@@download/ENCFF659YMN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF163VVF bigBed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF489GZO 5140050 ENCODE Processing Pipeline 1a463f61c3ba7cec9dd7c5e99b34b9f1 https://www.encodeproject.org/files/ENCFF163VVF/@@download/ENCFF163VVF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF516XHQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF468OUJ 711783 ENCODE Processing Pipeline 9fa425c410c63483b0421d401f58a3f1 https://www.encodeproject.org/files/ENCFF516XHQ/@@download/ENCFF516XHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF245RYC bigWig fold change over control ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF285LVE, ENCFF578NKF, ENCFF943DZB 194166742 ENCODE Processing Pipeline e50350b0b1468646fee690443359fa29 https://www.encodeproject.org/files/ENCFF245RYC/@@download/ENCFF245RYC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF489GZO bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285LVE, ENCFF305JRI, ENCFF943DZB 2696330 ENCODE Processing Pipeline 7353b54bdc04da777baaf93b5087e9c0 https://www.encodeproject.org/files/ENCFF489GZO/@@download/ENCFF489GZO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF852VIM bigBed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF171FLI 6813040 ENCODE Processing Pipeline 8cc256776c00e39167a538a893d832c0 https://www.encodeproject.org/files/ENCFF852VIM/@@download/ENCFF852VIM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF072CXB bed narrowPeak optimal idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF171FLI, ENCFF419RSJ, ENCFF489GZO, ENCFF659YMN 382704 ENCODE Processing Pipeline abfd3e66464073f9e2987a0b76a4c3a3 https://www.encodeproject.org/files/ENCFF072CXB/@@download/ENCFF072CXB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF468OUJ bed narrowPeak conservative idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF171FLI, ENCFF419RSJ, ENCFF489GZO, ENCFF659YMN 366218 ENCODE Processing Pipeline 48860a0395dc84b8db68658d076f4da1 https://www.encodeproject.org/files/ENCFF468OUJ/@@download/ENCFF468OUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF632XBG bigWig signal p-value ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ 505336661 ENCODE Processing Pipeline 41729d0e25f76dbf1d418aeca85e11e5 https://www.encodeproject.org/files/ENCFF632XBG/@@download/ENCFF632XBG.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF430AUL bigWig fold change over control ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF802IIV 192157124 ENCODE Processing Pipeline 9b5e7ebbe88e3d1ef9ec8427af8f9a02 https://www.encodeproject.org/files/ENCFF430AUL/@@download/ENCFF430AUL.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF167THE bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF802IIV 2949066 ENCODE Processing Pipeline 7dc33457c7ce90d2589689d9fea3e183 https://www.encodeproject.org/files/ENCFF167THE/@@download/ENCFF167THE.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF277KXQ bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ 2869150 ENCODE Processing Pipeline 9d8580ba0249475bc978a9694b61ede8 https://www.encodeproject.org/files/ENCFF277KXQ/@@download/ENCFF277KXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF222YCT bed narrowPeak conservative idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF167THE, ENCFF176XYE, ENCFF277KXQ 365775 ENCODE Processing Pipeline 8b9088fe5f495234626b161730cc0af8 https://www.encodeproject.org/files/ENCFF222YCT/@@download/ENCFF222YCT.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF345KCU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF222YCT 710832 ENCODE Processing Pipeline 87fad6d1fbe13f862d128eea2910dd20 https://www.encodeproject.org/files/ENCFF345KCU/@@download/ENCFF345KCU.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF736DUU bigBed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277KXQ 6466688 ENCODE Processing Pipeline 729d5351e61f75a78d04e55f1c8d89b0 https://www.encodeproject.org/files/ENCFF736DUU/@@download/ENCFF736DUU.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF501NMH bigWig fold change over control ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ 174605206 ENCODE Processing Pipeline 7030a527ba710df747720f796a8d4f0c https://www.encodeproject.org/files/ENCFF501NMH/@@download/ENCFF501NMH.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF538XRT bigWig signal p-value ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF802IIV 571880247 ENCODE Processing Pipeline bbdbdfa46e60297f063700ddd488d4e3 https://www.encodeproject.org/files/ENCFF538XRT/@@download/ENCFF538XRT.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF570QAY bigWig signal p-value ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ, ENCFF802IIV 631401003 ENCODE Processing Pipeline fb430a778443ab225a8eb68c0f47da6a https://www.encodeproject.org/files/ENCFF570QAY/@@download/ENCFF570QAY.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF267OJD bigWig fold change over control ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ, ENCFF802IIV 319805263 ENCODE Processing Pipeline 4e93a3fef82a5cf2692e5f8ebdb624fa https://www.encodeproject.org/files/ENCFF267OJD/@@download/ENCFF267OJD.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF346RDI bigBed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF176XYE 10660799 ENCODE Processing Pipeline 3a4292ffa862ae5951d48d2da570890d https://www.encodeproject.org/files/ENCFF346RDI/@@download/ENCFF346RDI.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF176XYE bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ, ENCFF802IIV 4919862 ENCODE Processing Pipeline 00d8106a196244360e77271c9b31d5dc https://www.encodeproject.org/files/ENCFF176XYE/@@download/ENCFF176XYE.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF663PBQ bigBed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF167THE 6815423 ENCODE Processing Pipeline c554983eb4bd542d62e78238350153b6 https://www.encodeproject.org/files/ENCFF663PBQ/@@download/ENCFF663PBQ.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF884JKW bed narrowPeak optimal idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF167THE, ENCFF176XYE, ENCFF277KXQ 382258 ENCODE Processing Pipeline b34f82ba92cb34b320e67f0328816c72 https://www.encodeproject.org/files/ENCFF884JKW/@@download/ENCFF884JKW.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF629SNR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF884JKW 733967 ENCODE Processing Pipeline 7c7f15aeed1a9624c2aa40e810ec8b71 https://www.encodeproject.org/files/ENCFF629SNR/@@download/ENCFF629SNR.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF171KWD fastq reads ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 1 40 single-ended 339248600 Xiang-Dong Fu, UCSD 5352a8dc06105f02d01c0d62900cde4b https://www.encodeproject.org/files/ENCFF171KWD/@@download/ENCFF171KWD.fastq.gz Illumina HiSeq 2000 /files/ENCFF577LLL/ released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF948AGS fastq reads ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 1 40 single-ended 347370344 Xiang-Dong Fu, UCSD e76c3f2e70febdf11f50fd3b84c94158 https://www.encodeproject.org/files/ENCFF948AGS/@@download/ENCFF948AGS.fastq.gz Illumina HiSeq 2000 /files/ENCFF363JFD/ released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF187TCP bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF171KWD, ENCFF807MUK 352193046 ENCODE Processing Pipeline b80913bbd07c618730fc9c19e8d9c8c7 https://www.encodeproject.org/files/ENCFF187TCP/@@download/ENCFF187TCP.bam hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF488SVK bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF807MUK, ENCFF948AGS 355224858 ENCODE Processing Pipeline e0e0d1a9ddeffa58cd501eb855e4dd21 https://www.encodeproject.org/files/ENCFF488SVK/@@download/ENCFF488SVK.bam hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF470GSP bam unfiltered alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF171KWD, ENCFF643CGH 491017769 ENCODE Processing Pipeline f5d367d3d65eca076d5f9fe723cc66f0 https://www.encodeproject.org/files/ENCFF470GSP/@@download/ENCFF470GSP.bam GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF953ICQ bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF643CGH, ENCFF948AGS 354759261 ENCODE Processing Pipeline 199a4137880e37eeb672500a3d57a82b https://www.encodeproject.org/files/ENCFF953ICQ/@@download/ENCFF953ICQ.bam GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF560BTA bam unfiltered alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF643CGH, ENCFF948AGS 500415888 ENCODE Processing Pipeline 77f47869e3f7314eb2943127c2bff2a9 https://www.encodeproject.org/files/ENCFF560BTA/@@download/ENCFF560BTA.bam GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF153MPX bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF171KWD, ENCFF643CGH 351723148 ENCODE Processing Pipeline 9e039ecd58d9b5c171981713887e5895 https://www.encodeproject.org/files/ENCFF153MPX/@@download/ENCFF153MPX.bam GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF225MPH bigWig fold change over control ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF120YSP, ENCFF153MPX, ENCFF906SAI, ENCFF953ICQ 732681095 ENCODE Processing Pipeline 59f4cebfcea685d7d6d1868cb792bf80 https://www.encodeproject.org/files/ENCFF225MPH/@@download/ENCFF225MPH.bigWig GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF353ZHX bigWig signal p-value ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF120YSP, ENCFF153MPX 586399738 ENCODE Processing Pipeline 726ade9f7df89f7a8abf7bce5225c57f https://www.encodeproject.org/files/ENCFF353ZHX/@@download/ENCFF353ZHX.bigWig GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF733CAH bigWig signal p-value ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF120YSP, ENCFF153MPX, ENCFF906SAI, ENCFF953ICQ 1142347257 ENCODE Processing Pipeline 23b5c425c6a90fe811b920fbf20647fa https://www.encodeproject.org/files/ENCFF733CAH/@@download/ENCFF733CAH.bigWig GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF519EJI bigWig fold change over control ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF120YSP, ENCFF153MPX 302728165 ENCODE Processing Pipeline 59d40927541da978caef51b30d560608 https://www.encodeproject.org/files/ENCFF519EJI/@@download/ENCFF519EJI.bigWig GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF601PCW bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF120YSP, ENCFF153MPX, ENCFF906SAI, ENCFF953ICQ 6084575 ENCODE Processing Pipeline 04d9ef79040823fbb5f2beba6bd16722 https://www.encodeproject.org/files/ENCFF601PCW/@@download/ENCFF601PCW.bed.gz GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF603DPZ bigWig signal p-value ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF906SAI, ENCFF953ICQ 634562849 ENCODE Processing Pipeline a237f27b194b8c05f9bc35d0349d8f25 https://www.encodeproject.org/files/ENCFF603DPZ/@@download/ENCFF603DPZ.bigWig GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF254PVV bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF120YSP, ENCFF153MPX 4382625 ENCODE Processing Pipeline c1df4d5f022a690c1e920aa230ac3682 https://www.encodeproject.org/files/ENCFF254PVV/@@download/ENCFF254PVV.bed.gz GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF415XXD bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF906SAI, ENCFF953ICQ 4491084 ENCODE Processing Pipeline a6640667ee3fd324277422767656127b https://www.encodeproject.org/files/ENCFF415XXD/@@download/ENCFF415XXD.bed.gz GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF142HGO bed narrowPeak conservative idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF254PVV, ENCFF415XXD, ENCFF419RSJ, ENCFF601PCW 18289 ENCODE Processing Pipeline fe8285f561538739e8f472439f9fb26f https://www.encodeproject.org/files/ENCFF142HGO/@@download/ENCFF142HGO.bed.gz GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF971NYD bigBed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF254PVV 9916633 ENCODE Processing Pipeline 079c9a23b120d6bd1174a961719a57d3 https://www.encodeproject.org/files/ENCFF971NYD/@@download/ENCFF971NYD.bigBed GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF177AXT bigBed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF415XXD 10035084 ENCODE Processing Pipeline 66dfa747687fb2abb458b96629617df7 https://www.encodeproject.org/files/ENCFF177AXT/@@download/ENCFF177AXT.bigBed GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF670ILH bed narrowPeak optimal idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF254PVV, ENCFF415XXD, ENCFF419RSJ, ENCFF601PCW 21075 ENCODE Processing Pipeline dec8a05196abf982d5ce940d7a42067a https://www.encodeproject.org/files/ENCFF670ILH/@@download/ENCFF670ILH.bed.gz GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF967DYH bigWig fold change over control ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF906SAI, ENCFF953ICQ 317542189 ENCODE Processing Pipeline 4abe51c127ac6daecba1e778d067ec12 https://www.encodeproject.org/files/ENCFF967DYH/@@download/ENCFF967DYH.bigWig GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF451CVE bigBed narrowPeak optimal idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF670ILH 87850 ENCODE Processing Pipeline 45b41e50e67f47f63be3bf3bf16e41d1 https://www.encodeproject.org/files/ENCFF451CVE/@@download/ENCFF451CVE.bigBed GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF090TOO bigBed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF601PCW 13450400 ENCODE Processing Pipeline 8ce5f099cb663776f586e004196fd76d https://www.encodeproject.org/files/ENCFF090TOO/@@download/ENCFF090TOO.bigBed GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF239TSK bigBed narrowPeak conservative idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF142HGO 84000 ENCODE Processing Pipeline f23627dc359d5f1f005f07e978c8b800 https://www.encodeproject.org/files/ENCFF239TSK/@@download/ENCFF239TSK.bigBed GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF303FDE bigBed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF144QTJ 10467548 ENCODE Processing Pipeline 672a61aedebe5d149718562fe6af6c41 https://www.encodeproject.org/files/ENCFF303FDE/@@download/ENCFF303FDE.bigBed hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF983PUB bigBed narrowPeak optimal idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF782GWS 87819 ENCODE Processing Pipeline 97497143c6a5ee3a7c4f31fd660b0a03 https://www.encodeproject.org/files/ENCFF983PUB/@@download/ENCFF983PUB.bigBed hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF862OAR bigWig fold change over control ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF488SVK, ENCFF641CEP 323488196 ENCODE Processing Pipeline f707397bc21ba8237277ffa0e2153d27 https://www.encodeproject.org/files/ENCFF862OAR/@@download/ENCFF862OAR.bigWig hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF144QTJ bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF488SVK, ENCFF641CEP 4860631 ENCODE Processing Pipeline cdbc480c0129042595322c94598b117f https://www.encodeproject.org/files/ENCFF144QTJ/@@download/ENCFF144QTJ.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF934BOE bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF187TCP, ENCFF488SVK, ENCFF493QSH, ENCFF641CEP 6222350 ENCODE Processing Pipeline 8e85385996eace4de7fa9f0596787b83 https://www.encodeproject.org/files/ENCFF934BOE/@@download/ENCFF934BOE.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF405DOB bigWig fold change over control ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF187TCP, ENCFF493QSH 308647324 ENCODE Processing Pipeline 3f2446e72373a0d2478798ca9358971c https://www.encodeproject.org/files/ENCFF405DOB/@@download/ENCFF405DOB.bigWig hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF857BZI bigWig signal p-value ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF488SVK, ENCFF641CEP 592553726 ENCODE Processing Pipeline 18cd31c77108cbcca313967c5cdd34d6 https://www.encodeproject.org/files/ENCFF857BZI/@@download/ENCFF857BZI.bigWig hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF516BXP bigWig signal p-value ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF187TCP, ENCFF488SVK, ENCFF493QSH, ENCFF641CEP 988578390 ENCODE Processing Pipeline e62a2210c81ea150456a04e357b43ec6 https://www.encodeproject.org/files/ENCFF516BXP/@@download/ENCFF516BXP.bigWig hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF605NTJ bigBed narrowPeak conservative idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF100UTE 83230 ENCODE Processing Pipeline 2cdf34417beb88c6920c8cf86c40bee0 https://www.encodeproject.org/files/ENCFF605NTJ/@@download/ENCFF605NTJ.bigBed hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF539QIP bigBed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF934BOE 13435199 ENCODE Processing Pipeline 482f58dac5c0deea878cdb92a75526a7 https://www.encodeproject.org/files/ENCFF539QIP/@@download/ENCFF539QIP.bigBed hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF319QUS bigWig fold change over control ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF187TCP, ENCFF488SVK, ENCFF493QSH, ENCFF641CEP 782216830 ENCODE Processing Pipeline 489c4d0fa160de3f5e14ea04d1357d9e https://www.encodeproject.org/files/ENCFF319QUS/@@download/ENCFF319QUS.bigWig hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF179WPR bigBed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF686LNT 10132197 ENCODE Processing Pipeline 75c9ea315dbc59003bb58d350c50f127 https://www.encodeproject.org/files/ENCFF179WPR/@@download/ENCFF179WPR.bigBed hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF100UTE bed narrowPeak conservative idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF144QTJ, ENCFF686LNT, ENCFF934BOE 18530 ENCODE Processing Pipeline a9039f6cca654ed13119e93837d639ec https://www.encodeproject.org/files/ENCFF100UTE/@@download/ENCFF100UTE.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF782GWS bed narrowPeak optimal idr thresholded peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF001TDO, ENCFF144QTJ, ENCFF686LNT, ENCFF934BOE 21299 ENCODE Processing Pipeline af80c3dcb4598e6120e3793fd0d10b3c https://www.encodeproject.org/files/ENCFF782GWS/@@download/ENCFF782GWS.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF632OCB bigWig signal p-value ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF187TCP, ENCFF493QSH 515495320 ENCODE Processing Pipeline e97c223c0710e92495315f0f35d12275 https://www.encodeproject.org/files/ENCFF632OCB/@@download/ENCFF632OCB.bigWig hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF686LNT bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF187TCP, ENCFF493QSH 4512649 ENCODE Processing Pipeline fa9e187e5f39fb2784f5a5bc36f31368 https://www.encodeproject.org/files/ENCFF686LNT/@@download/ENCFF686LNT.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF527PUP bam unfiltered alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF807MUK, ENCFF948AGS 498930308 ENCODE Processing Pipeline af534d0f455c2adf30422678df6a8dcd https://www.encodeproject.org/files/ENCFF527PUP/@@download/ENCFF527PUP.bam hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF330QLM bam unfiltered alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF171KWD, ENCFF807MUK 489587545 ENCODE Processing Pipeline 1dffdaa651b30c86835798b4c812e9cd https://www.encodeproject.org/files/ENCFF330QLM/@@download/ENCFF330QLM.bam hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF000ZUV bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE ENCFF001VRM 294278 Kevin White, UChicago 6b9ea80304dc0c2464842aabed45e32f https://www.encodeproject.org/files/ENCFF000ZUV/@@download/ENCFF000ZUV.bigBed hg19 archived low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000ZUW bigWig signal ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 292542056 Kevin White, UChicago 5382d810da2bb9da2659800c694297f8 https://www.encodeproject.org/files/ENCFF000ZUW/@@download/ENCFF000ZUW.bigWig hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZUX bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 671994209 Kevin White, UChicago 770a028f9d4005de622063829caffda1 https://www.encodeproject.org/files/ENCFF000ZUX/@@download/ENCFF000ZUX.bam hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZUY bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 716296990 Kevin White, UChicago d6593cdb6dbd763ee7386d174269312f https://www.encodeproject.org/files/ENCFF000ZUY/@@download/ENCFF000ZUY.bam hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZVE fastq reads ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 1 36 single-ended 848328492 Kevin White, UChicago 7d03fb3f855bb949563e61199a0ca587 https://www.encodeproject.org/files/ENCFF000ZVE/@@download/ENCFF000ZVE.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ZVJ/ released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000ZVF fastq reads ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 1 36 single-ended 845736353 Kevin White, UChicago 1fcb7812e8107875b334d23c6251cde2 https://www.encodeproject.org/files/ENCFF000ZVF/@@download/ENCFF000ZVF.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ZXU/ released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF001VRM bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 127185 Kevin White, UChicago 35973747f04c53456e53f30125e1ba96 https://www.encodeproject.org/files/ENCFF001VRM/@@download/ENCFF001VRM.bed.gz hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF677UDF bam unfiltered alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZVE, ENCFF643CGH 1036795439 ENCODE Processing Pipeline 22d6067cef6c384128b2d8a108752d6f https://www.encodeproject.org/files/ENCFF677UDF/@@download/ENCFF677UDF.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF727AXF bam unfiltered alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZVF, ENCFF643CGH 1056904874 ENCODE Processing Pipeline aea8c0448c96318eccdd2bbbe501de37 https://www.encodeproject.org/files/ENCFF727AXF/@@download/ENCFF727AXF.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF586HBG bam unfiltered alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZVF, ENCFF807MUK 1051945716 ENCODE Processing Pipeline 38f2ee18bfa57be2dde3bd73d0cad304 https://www.encodeproject.org/files/ENCFF586HBG/@@download/ENCFF586HBG.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF245CVQ bam unfiltered alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZVE, ENCFF807MUK 1029697487 ENCODE Processing Pipeline 3e09f92f2b5b65cefeae52b2c370514a https://www.encodeproject.org/files/ENCFF245CVQ/@@download/ENCFF245CVQ.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF602UAC bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZVF, ENCFF643CGH 752863847 ENCODE Processing Pipeline 7180fe9b40f918381adcd6c4357de77a https://www.encodeproject.org/files/ENCFF602UAC/@@download/ENCFF602UAC.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF108WAD bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZVE, ENCFF807MUK 703884003 ENCODE Processing Pipeline 6c6f5561892c9bd9b55f9df323e968ed https://www.encodeproject.org/files/ENCFF108WAD/@@download/ENCFF108WAD.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF650RFL bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZVE, ENCFF643CGH 703716633 ENCODE Processing Pipeline 37c8976e8feca2b946c2c8226a3a7b15 https://www.encodeproject.org/files/ENCFF650RFL/@@download/ENCFF650RFL.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF387PPQ bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZVF, ENCFF807MUK 753412701 ENCODE Processing Pipeline d114d38cbaeae73ecf7882ce06801d91 https://www.encodeproject.org/files/ENCFF387PPQ/@@download/ENCFF387PPQ.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF734ZIE bigWig signal p-value ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF108WAD, ENCFF647LGE, ENCFF713KWF 528977330 ENCODE Processing Pipeline 80adaf3da68fd3412d354428008d291a https://www.encodeproject.org/files/ENCFF734ZIE/@@download/ENCFF734ZIE.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF164WSE bigWig signal p-value ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF240RBJ, ENCFF244GCJ, ENCFF602UAC 584300996 ENCODE Processing Pipeline e411e0d563b9fe2d9bcbd33173b151b0 https://www.encodeproject.org/files/ENCFF164WSE/@@download/ENCFF164WSE.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF903QGU bigWig signal p-value ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 550488052 ENCODE Processing Pipeline 0f3ee001d05f7bc1e084f1fbeb6626be https://www.encodeproject.org/files/ENCFF903QGU/@@download/ENCFF903QGU.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF411SXB bigWig signal p-value ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF240RBJ, ENCFF244GCJ, ENCFF650RFL 542151244 ENCODE Processing Pipeline f05bfcaa14d6456c4dade7e13cd91e60 https://www.encodeproject.org/files/ENCFF411SXB/@@download/ENCFF411SXB.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF191IYI bigWig signal p-value ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF240RBJ, ENCFF244GCJ, ENCFF602UAC, ENCFF650RFL 713729665 ENCODE Processing Pipeline 2421c15185681d10b4c6e6b3499ae4b6 https://www.encodeproject.org/files/ENCFF191IYI/@@download/ENCFF191IYI.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF457LGG bigWig fold change over control ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF108WAD, ENCFF647LGE, ENCFF713KWF 499942049 ENCODE Processing Pipeline e7092145c39ec09af730f1a2cdc9511c https://www.encodeproject.org/files/ENCFF457LGG/@@download/ENCFF457LGG.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF713HHW bigWig fold change over control ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF240RBJ, ENCFF244GCJ, ENCFF602UAC 488785862 ENCODE Processing Pipeline d6d9f403e910475de308c5a3e12ed250 https://www.encodeproject.org/files/ENCFF713HHW/@@download/ENCFF713HHW.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF349DKD bigWig signal p-value ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF108WAD, ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 883095565 ENCODE Processing Pipeline 17baf604e4369de78dc294e3eed4d558 https://www.encodeproject.org/files/ENCFF349DKD/@@download/ENCFF349DKD.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF216SSM bigWig fold change over control ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF240RBJ, ENCFF244GCJ, ENCFF650RFL 497023103 ENCODE Processing Pipeline c13a5fc5bee6b7890230c5075d30a599 https://www.encodeproject.org/files/ENCFF216SSM/@@download/ENCFF216SSM.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF033MEB bigWig fold change over control ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 487527069 ENCODE Processing Pipeline 210304320b4bed2152347271c2592495 https://www.encodeproject.org/files/ENCFF033MEB/@@download/ENCFF033MEB.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF710QSL bigWig fold change over control ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF108WAD, ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 759294431 ENCODE Processing Pipeline 3e165495d209077453b2c042698a8afd https://www.encodeproject.org/files/ENCFF710QSL/@@download/ENCFF710QSL.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF085GMS bigWig fold change over control ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF240RBJ, ENCFF244GCJ, ENCFF602UAC, ENCFF650RFL 788186734 ENCODE Processing Pipeline fe4a5d83bb289b45cca0b95f664faf97 https://www.encodeproject.org/files/ENCFF085GMS/@@download/ENCFF085GMS.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF585FBZ bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF108WAD, ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 6584202 ENCODE Processing Pipeline cca6ada00315104c0fa60b7e9ffd437d https://www.encodeproject.org/files/ENCFF585FBZ/@@download/ENCFF585FBZ.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF559ETK bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF368NGK 13259447 ENCODE Processing Pipeline bbcb45d1790fec9e3141157f1f9bfd58 https://www.encodeproject.org/files/ENCFF559ETK/@@download/ENCFF559ETK.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF771WFB bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF108WAD, ENCFF647LGE, ENCFF713KWF 5969136 ENCODE Processing Pipeline 15028b121038cbdc39e9bb1a764f4b87 https://www.encodeproject.org/files/ENCFF771WFB/@@download/ENCFF771WFB.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF229ZGH bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF240RBJ, ENCFF244GCJ, ENCFF650RFL 5921871 ENCODE Processing Pipeline eb25eadb6111f8dbd9c08c1512a86b1a https://www.encodeproject.org/files/ENCFF229ZGH/@@download/ENCFF229ZGH.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF117DTC bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF240RBJ, ENCFF244GCJ, ENCFF602UAC, ENCFF650RFL 6584397 ENCODE Processing Pipeline 6fd2907c80ee14ec583c6b844473f4fc https://www.encodeproject.org/files/ENCFF117DTC/@@download/ENCFF117DTC.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF368NGK bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 5646841 ENCODE Processing Pipeline b58f5e76478991950ef4d8e8b5f0d8fd https://www.encodeproject.org/files/ENCFF368NGK/@@download/ENCFF368NGK.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF858ZAR bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF240RBJ, ENCFF244GCJ, ENCFF602UAC 5641637 ENCODE Processing Pipeline 15479ac58223db1458f5f3445066f9b8 https://www.encodeproject.org/files/ENCFF858ZAR/@@download/ENCFF858ZAR.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF943JBU bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF229ZGH 13156035 ENCODE Processing Pipeline c80755b0be4c4d4f6c792e514105bb37 https://www.encodeproject.org/files/ENCFF943JBU/@@download/ENCFF943JBU.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF357OZC bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF771WFB 13134029 ENCODE Processing Pipeline 7e4750d178a192ff55f22099e71f0e6e https://www.encodeproject.org/files/ENCFF357OZC/@@download/ENCFF357OZC.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF983BUB bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF858ZAR 13269628 ENCODE Processing Pipeline ccadb0acfc0caf64c0a815621e05717c https://www.encodeproject.org/files/ENCFF983BUB/@@download/ENCFF983BUB.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF223YTT bed narrowPeak conservative idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF001TDO, ENCFF368NGK, ENCFF585FBZ, ENCFF771WFB 1858 ENCODE Processing Pipeline 303b088828f1ffb96de7c7d845adcdc6 https://www.encodeproject.org/files/ENCFF223YTT/@@download/ENCFF223YTT.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF868ABD bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF117DTC 13144210 ENCODE Processing Pipeline 864194b74445026ff4e31a34fcd62b0b https://www.encodeproject.org/files/ENCFF868ABD/@@download/ENCFF868ABD.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF030QEM bed narrowPeak optimal idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF001TDO, ENCFF368NGK, ENCFF585FBZ, ENCFF771WFB 18193 ENCODE Processing Pipeline 14a3d6885148fb51f43bf238a190ef3c https://www.encodeproject.org/files/ENCFF030QEM/@@download/ENCFF030QEM.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF002VSM bed narrowPeak conservative idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF117DTC, ENCFF229ZGH, ENCFF419RSJ, ENCFF858ZAR 1091 ENCODE Processing Pipeline c6f18f3c7c85f19680cb89d4e58c2b17 https://www.encodeproject.org/files/ENCFF002VSM/@@download/ENCFF002VSM.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF468APC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF868BIT 108505 ENCODE Processing Pipeline 077db3336ca5d2e78663571145a00f1b https://www.encodeproject.org/files/ENCFF468APC/@@download/ENCFF468APC.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF734YFO bigBed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF585FBZ 13134565 ENCODE Processing Pipeline 062ae409d6c6212650a42cb30907169b https://www.encodeproject.org/files/ENCFF734YFO/@@download/ENCFF734YFO.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF171BKD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF002VSM 60658 ENCODE Processing Pipeline b6af98891b18a1bd0b17ab048609cf42 https://www.encodeproject.org/files/ENCFF171BKD/@@download/ENCFF171BKD.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF997WGU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF223YTT 55625 ENCODE Processing Pipeline 82510e99eeaf9a19feadf8dd525e3be8 https://www.encodeproject.org/files/ENCFF997WGU/@@download/ENCFF997WGU.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF868BIT bed narrowPeak optimal idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF117DTC, ENCFF229ZGH, ENCFF419RSJ, ENCFF858ZAR 15594 ENCODE Processing Pipeline 51debf39c5cf7bebc1d7e177410af26e https://www.encodeproject.org/files/ENCFF868BIT/@@download/ENCFF868BIT.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF455YGN bigBed narrowPeak optimal idr thresholded peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF030QEM 111791 ENCODE Processing Pipeline 1865413e1a207e8f96f507f18d453934 https://www.encodeproject.org/files/ENCFF455YGN/@@download/ENCFF455YGN.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF732EAG fastq reads ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 1 ENCFF807YBJ 2619940034 Michael Snyder, Stanford 6fbe0b8788c34905c4671d1c795237bd SRA:SRR6214041 https://www.encodeproject.org/files/ENCFF732EAG/@@download/ENCFF732EAG.fastq.gz Illumina HiSeq 4000 /files/ENCFF269BZN/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF807YBJ fastq reads ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 1 100 paired-ended 2 ENCFF732EAG 3147738714 Michael Snyder, Stanford 9cb251401f9102c016ad878ecbf572ab SRA:SRR6214041 https://www.encodeproject.org/files/ENCFF807YBJ/@@download/ENCFF807YBJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF154FXE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF942JLD bam unfiltered alignments ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF732EAG, ENCFF807YBJ 5116519999 ENCODE Processing Pipeline cc502c3ec49ea497143c59581e9d58f4 https://www.encodeproject.org/files/ENCFF942JLD/@@download/ENCFF942JLD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF059OOS bam unfiltered alignments ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF732EAG, ENCFF807MUK, ENCFF807YBJ 5117459874 ENCODE Processing Pipeline 7cad6d26c0c03552511ebc55e388e492 https://www.encodeproject.org/files/ENCFF059OOS/@@download/ENCFF059OOS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF692BVS bam alignments ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF732EAG, ENCFF807YBJ 2949735670 ENCODE Processing Pipeline a45b1674e5465b008d069d709c86796a https://www.encodeproject.org/files/ENCFF692BVS/@@download/ENCFF692BVS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF146RSB bam alignments ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF732EAG, ENCFF807MUK, ENCFF807YBJ 2945998615 ENCODE Processing Pipeline c666b21d72645d4b9e58720a731e258d https://www.encodeproject.org/files/ENCFF146RSB/@@download/ENCFF146RSB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF412SUL bigWig signal p-value ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF146RSB, ENCFF304OGW 911112772 ENCODE Processing Pipeline afc8ad3ad6f15008bd9027be82bffce5 https://www.encodeproject.org/files/ENCFF412SUL/@@download/ENCFF412SUL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF115NGL bigWig fold change over control ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF146RSB, ENCFF304OGW 1011004277 ENCODE Processing Pipeline 2c2818e6eb9a82b022dc95858813ef2f https://www.encodeproject.org/files/ENCFF115NGL/@@download/ENCFF115NGL.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF445TVF bed narrowPeak peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF146RSB, ENCFF304OGW 5415933 ENCODE Processing Pipeline c63216618b224250bd926eeed19e9f4b https://www.encodeproject.org/files/ENCFF445TVF/@@download/ENCFF445TVF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF803ZDY bigBed narrowPeak peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF445TVF 11481841 ENCODE Processing Pipeline 558c5552deaf8a80a927159cb2c081b4 https://www.encodeproject.org/files/ENCFF803ZDY/@@download/ENCFF803ZDY.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF921JEC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF001TDO, ENCFF445TVF 189822 ENCODE Processing Pipeline 0be1a1db71b023110a1b00caacef8de5 https://www.encodeproject.org/files/ENCFF921JEC/@@download/ENCFF921JEC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF916UJQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF921JEC 398881 ENCODE Processing Pipeline f0ffdbf9c43f42eded7e54ef6208a498 https://www.encodeproject.org/files/ENCFF916UJQ/@@download/ENCFF916UJQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF663DIG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF087XEZ, ENCFF419RSJ 190883 ENCODE Processing Pipeline 95c60e837d7db276418abceb9731df5c https://www.encodeproject.org/files/ENCFF663DIG/@@download/ENCFF663DIG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF259PVM bigWig signal p-value ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF692BVS, ENCFF787VGS 906782018 ENCODE Processing Pipeline b9a380a646cba9ced5094865677eb0cd https://www.encodeproject.org/files/ENCFF259PVM/@@download/ENCFF259PVM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF717BVP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF663DIG 403080 ENCODE Processing Pipeline 0216c2236d47270320615348a217cbd2 https://www.encodeproject.org/files/ENCFF717BVP/@@download/ENCFF717BVP.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF087XEZ bed narrowPeak peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF692BVS, ENCFF787VGS 5415920 ENCODE Processing Pipeline 9d75a0c84d4e8d8fd31b19ccd063c479 https://www.encodeproject.org/files/ENCFF087XEZ/@@download/ENCFF087XEZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF258KMS bigBed narrowPeak peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF087XEZ 11499746 ENCODE Processing Pipeline 9b8060a7fc50fd888c884a1074732588 https://www.encodeproject.org/files/ENCFF258KMS/@@download/ENCFF258KMS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF188HNM bigWig fold change over control ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF692BVS, ENCFF787VGS 1012562764 ENCODE Processing Pipeline d311c070ec61ed178229fe0f1c0b137a https://www.encodeproject.org/files/ENCFF188HNM/@@download/ENCFF188HNM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000NQU bam alignments ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRH 1665810672 Richard Myers, HAIB c2721708dee8fe2c041087ecf01f09a1 https://www.encodeproject.org/files/ENCFF000NQU/@@download/ENCFF000NQU.bam hg19 released biological replicates with identical biosample ENCFF000NQV bigBed broadPeak peaks ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVV 417411 Richard Myers, HAIB 092341461c1607103e8e656cf4014c8f https://www.encodeproject.org/files/ENCFF000NQV/@@download/ENCFF000NQV.bigBed hg19 released biological replicates with identical biosample ENCFF000NQW bigBed broadPeak peaks ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVW 443063 Richard Myers, HAIB 174b4a5f2cb2f94c3bf989ae26ea6130 https://www.encodeproject.org/files/ENCFF000NQW/@@download/ENCFF000NQW.bigBed hg19 released biological replicates with identical biosample ENCFF000NQX bam alignments ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRO 1708686320 Richard Myers, HAIB 6d9931a7a5fe0c71d138da51e921ee8a https://www.encodeproject.org/files/ENCFF000NQX/@@download/ENCFF000NQX.bam hg19 released biological replicates with identical biosample ENCFF000NQY bigWig raw signal ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 229073477 Richard Myers, HAIB 434bae7290e7e4d53735d0d60eb3d394 https://www.encodeproject.org/files/ENCFF000NQY/@@download/ENCFF000NQY.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NQZ bigWig raw signal ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 219728705 Richard Myers, HAIB f82534939cc1de0e61d26b8fc09b529a https://www.encodeproject.org/files/ENCFF000NQZ/@@download/ENCFF000NQZ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000NRH fastq reads ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1713682264 Richard Myers, HAIB ea8e1da3c67d6e038cdd8a2da6a9e270 https://www.encodeproject.org/files/ENCFF000NRH/@@download/ENCFF000NRH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NRO fastq reads ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1755685420 Richard Myers, HAIB 291e4c8f545bfcf1c5f82152c1da4831 https://www.encodeproject.org/files/ENCFF000NRO/@@download/ENCFF000NRO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVV bed broadPeak peaks ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 207798 Richard Myers, HAIB be52ace947669d67c0f4d2a8971b208f https://www.encodeproject.org/files/ENCFF001TVV/@@download/ENCFF001TVV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TVW bed broadPeak peaks ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 215971 Richard Myers, HAIB 36dbaf115390f84852308cc3402f9826 https://www.encodeproject.org/files/ENCFF001TVW/@@download/ENCFF001TVW.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000XKH bam alignments ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKS 295671228 Michael Snyder, Stanford 2df89ef03452affbdcfccc630c4709f1 https://www.encodeproject.org/files/ENCFF000XKH/@@download/ENCFF000XKH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKI bam alignments ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKQ 320832116 Michael Snyder, Stanford 6462bb6c0343e80de6afed6ff24c289a https://www.encodeproject.org/files/ENCFF000XKI/@@download/ENCFF000XKI.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKJ bigBed narrowPeak peaks ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJD 3523716 Michael Snyder, Stanford 98d939b524fc8aa822db4e193b3249c6 https://www.encodeproject.org/files/ENCFF000XKJ/@@download/ENCFF000XKJ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XKM bigWig signal ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 177637151 Michael Snyder, Stanford c082e370285967d82f9bba64c0efae16 https://www.encodeproject.org/files/ENCFF000XKM/@@download/ENCFF000XKM.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000XKQ fastq reads ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 878642077 Michael Snyder, Stanford 2ca70470bbb08601998ce7c39509f032 https://www.encodeproject.org/files/ENCFF000XKQ/@@download/ENCFF000XKQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XKS fastq reads ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1130677082 Michael Snyder, Stanford 344e66e0499e18860fdb8e6749100585 https://www.encodeproject.org/files/ENCFF000XKS/@@download/ENCFF000XKS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJD bed narrowPeak peaks ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1329608 Michael Snyder, Stanford 7a21d04154ffb1709641752d4612b2e4 https://www.encodeproject.org/files/ENCFF001VJD/@@download/ENCFF001VJD.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CTB bed narrowPeak optimal idr thresholded peaks ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 946544 ENCODE Consortium Analysis Working Group 11cdf5ce154b89532bb688f47985f9e2 https://www.encodeproject.org/files/ENCFF002CTB/@@download/ENCFF002CTB.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF056NIB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTB 2041027 ENCODE Consortium b8b9307349b28623eb7f505ab613635f https://www.encodeproject.org/files/ENCFF056NIB/@@download/ENCFF056NIB.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000WMU bam alignments ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WNA 172755900 Michael Snyder, Stanford a0a1caf86203e19c8acfae27e17a78cd https://www.encodeproject.org/files/ENCFF000WMU/@@download/ENCFF000WMU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WMV bam alignments ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WNE 159279652 Michael Snyder, Stanford da5dfbb75c223d8f84704e475bf9fb7e https://www.encodeproject.org/files/ENCFF000WMV/@@download/ENCFF000WMV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WMW bam alignments ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WNF 177977570 Michael Snyder, Stanford d7fa299cef77f4279f0534bf41cedb21 https://www.encodeproject.org/files/ENCFF000WMW/@@download/ENCFF000WMW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WMX bigBed narrowPeak peaks ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGG 615462 Michael Snyder, Stanford bf3c254fc19a520283d2269248e798f3 https://www.encodeproject.org/files/ENCFF000WMX/@@download/ENCFF000WMX.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNA fastq reads ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 145446688 Michael Snyder, Stanford 9c7fbc64eaf772d204855a0884a23efe https://www.encodeproject.org/files/ENCFF000WNA/@@download/ENCFF000WNA.fastq.gz Illumina Genome Analyzer /files/ENCFF000WMA/ released biological replicates with identical biosample insufficient read length ENCFF000WNB bigWig signal ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 166953611 Michael Snyder, Stanford e82ae53b1ceb87240d8129e59cf6e551 https://www.encodeproject.org/files/ENCFF000WNB/@@download/ENCFF000WNB.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WNE fastq reads ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 128696040 Michael Snyder, Stanford c484bbaf5da6e6dc9c5241453b595215 https://www.encodeproject.org/files/ENCFF000WNE/@@download/ENCFF000WNE.fastq.gz Illumina Genome Analyzer /files/ENCFF000WMH/ released biological replicates with identical biosample insufficient read length ENCFF000WNF fastq reads ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 147625855 Michael Snyder, Stanford 5b6c909c7540e15244a0b022b1e119b3 https://www.encodeproject.org/files/ENCFF000WNF/@@download/ENCFF000WNF.fastq.gz Illumina Genome Analyzer /files/ENCFF000WMM/ released biological replicates with identical biosample insufficient read length ENCFF001VGG bed narrowPeak peaks ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 237679 Michael Snyder, Stanford f53e30f3cb283bf328f6d3af0259293a https://www.encodeproject.org/files/ENCFF001VGG/@@download/ENCFF001VGG.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CQI bed narrowPeak optimal idr thresholded peaks ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 350465 ENCODE Consortium Analysis Working Group 91d3a4b0a2a95307f816f0dbb2cb70a9 https://www.encodeproject.org/files/ENCFF002CQI/@@download/ENCFF002CQI.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF039KPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQI 941175 ENCODE Consortium a14393a67a27dd063ce2a3c8ca73b844 https://www.encodeproject.org/files/ENCFF039KPL/@@download/ENCFF039KPL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YJV bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOR 437442717 Sherman Weissman, Yale 44619c384e614ee2a1525fd414e253b1 https://www.encodeproject.org/files/ENCFF000YJV/@@download/ENCFF000YJV.bam hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YJW bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMQ 142433 Sherman Weissman, Yale 0430b3908ec95d6611e9c1e3bcb32e84 https://www.encodeproject.org/files/ENCFF000YJW/@@download/ENCFF000YJW.bigBed hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YJX bigWig signal ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 329080369 Sherman Weissman, Yale 7657c2708c007a28f91db4a1cabbc508 https://www.encodeproject.org/files/ENCFF000YJX/@@download/ENCFF000YJX.bigWig hg19 archived control low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YJY bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOT 757538229 Sherman Weissman, Yale 373e5449bf1b93042f78a537ffc0fd7e https://www.encodeproject.org/files/ENCFF000YJY/@@download/ENCFF000YJY.bam hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YOR fastq reads ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 335087508 Sherman Weissman, Yale c2d8e61846e50f012fdd159011913e18 https://www.encodeproject.org/files/ENCFF000YOR/@@download/ENCFF000YOR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YOT fastq reads ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 570318180 Sherman Weissman, Yale 7ee2d73df4b042bd396438a00e99a228 https://www.encodeproject.org/files/ENCFF000YOT/@@download/ENCFF000YOT.fastq.gz Illumina Genome Analyzer /files/ENCFF000YOV/ released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VMQ bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 46587 Sherman Weissman, Yale 4e22d0d1055653b9d9d5d0df8b4aa04d https://www.encodeproject.org/files/ENCFF001VMQ/@@download/ENCFF001VMQ.bed.gz hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CWD bed narrowPeak optimal idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 174210 ENCODE Consortium Analysis Working Group f2e6a896ed9f1597694b779de3fa7a23 https://www.encodeproject.org/files/ENCFF002CWD/@@download/ENCFF002CWD.bed.gz hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF948ZPP bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWD 403446 ENCODE Consortium daae9ed3665350b86717e0106c9b0171 https://www.encodeproject.org/files/ENCFF948ZPP/@@download/ENCFF948ZPP.bigBed hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF929JOF bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOR, ENCFF807MUK 283037583 ENCODE Processing Pipeline 32b3baa7de8975e05a049eebeb51bafd https://www.encodeproject.org/files/ENCFF929JOF/@@download/ENCFF929JOF.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF439NNR bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOR, ENCFF643CGH 282690289 ENCODE Processing Pipeline 7f2e39549c861be276545cef4ef95c4c https://www.encodeproject.org/files/ENCFF439NNR/@@download/ENCFF439NNR.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF524XVD bam unfiltered alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOR, ENCFF807MUK 438100396 ENCODE Processing Pipeline 0e5094fa13252689d09813ceceda1bb2 https://www.encodeproject.org/files/ENCFF524XVD/@@download/ENCFF524XVD.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF877JAH bam unfiltered alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOR, ENCFF643CGH 439191445 ENCODE Processing Pipeline beb480d28545e13f9c8fe8086c9385e4 https://www.encodeproject.org/files/ENCFF877JAH/@@download/ENCFF877JAH.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF739YJA bam unfiltered alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOT, ENCFF807MUK 758200490 ENCODE Processing Pipeline 6d504c6b87f117849b9c7049faeb8690 https://www.encodeproject.org/files/ENCFF739YJA/@@download/ENCFF739YJA.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF701IFH bam unfiltered alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOT, ENCFF643CGH 760421496 ENCODE Processing Pipeline 0113cc7aa9c398e835bcb219a9d6ffd2 https://www.encodeproject.org/files/ENCFF701IFH/@@download/ENCFF701IFH.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF504AWB bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOT, ENCFF807MUK 306291115 ENCODE Processing Pipeline 183bcd094a699e1e5acc01d75506e6d2 https://www.encodeproject.org/files/ENCFF504AWB/@@download/ENCFF504AWB.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF483RLD bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOT, ENCFF643CGH 305866783 ENCODE Processing Pipeline 7a072ef30683126579c37a910624ef3f https://www.encodeproject.org/files/ENCFF483RLD/@@download/ENCFF483RLD.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF225OQI bigWig signal p-value ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF929JOF 281965653 ENCODE Processing Pipeline 73c6a74cf917c797cfdba82fd0467cb6 https://www.encodeproject.org/files/ENCFF225OQI/@@download/ENCFF225OQI.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF540RNZ bigWig signal p-value ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF504AWB, ENCFF650MOB 296886700 ENCODE Processing Pipeline 7f334e367b648185121b834ed4e69b8d https://www.encodeproject.org/files/ENCFF540RNZ/@@download/ENCFF540RNZ.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF529TRD bigWig signal p-value ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF439NNR, ENCFF767FSP 288308340 ENCODE Processing Pipeline 21d2311076511c44c0cfbfcef4015446 https://www.encodeproject.org/files/ENCFF529TRD/@@download/ENCFF529TRD.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF747JCN bigWig fold change over control ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF483RLD, ENCFF767FSP 139328471 ENCODE Processing Pipeline bb6d030c9d34d96be9769c5cebfb5187 https://www.encodeproject.org/files/ENCFF747JCN/@@download/ENCFF747JCN.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF103SHO bigWig signal p-value ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF504AWB, ENCFF650MOB, ENCFF929JOF 295770428 ENCODE Processing Pipeline bf69904f23ec5dbb5b26674e1c19f8e1 https://www.encodeproject.org/files/ENCFF103SHO/@@download/ENCFF103SHO.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF833DXL bigWig fold change over control ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF929JOF 142402364 ENCODE Processing Pipeline cdd078612a06ac449dd608e9dea8a958 https://www.encodeproject.org/files/ENCFF833DXL/@@download/ENCFF833DXL.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF191BRL bigWig signal p-value ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF483RLD, ENCFF767FSP 294193052 ENCODE Processing Pipeline 3e4ed679d9466e907f29638c69fee5ec https://www.encodeproject.org/files/ENCFF191BRL/@@download/ENCFF191BRL.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF478FXQ bigWig fold change over control ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF504AWB, ENCFF650MOB 139924873 ENCODE Processing Pipeline 1f8c305c75f9e97fd0a3ed281932824d https://www.encodeproject.org/files/ENCFF478FXQ/@@download/ENCFF478FXQ.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF670SAS bigWig signal p-value ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF439NNR, ENCFF483RLD, ENCFF767FSP 295264523 ENCODE Processing Pipeline c383a6fab2b8cf11bb798941810c3c99 https://www.encodeproject.org/files/ENCFF670SAS/@@download/ENCFF670SAS.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF137AAX bigWig fold change over control ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF439NNR, ENCFF767FSP 141019794 ENCODE Processing Pipeline b73cc707b92a45f53ceb0d0e84b8af42 https://www.encodeproject.org/files/ENCFF137AAX/@@download/ENCFF137AAX.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF517GFP bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF929JOF 3101096 ENCODE Processing Pipeline e2be7bd7967e11d555813e58abd60384 https://www.encodeproject.org/files/ENCFF517GFP/@@download/ENCFF517GFP.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF761YWV bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF504AWB, ENCFF650MOB, ENCFF929JOF 4870351 ENCODE Processing Pipeline c10e60e9a670d181856d800248875a13 https://www.encodeproject.org/files/ENCFF761YWV/@@download/ENCFF761YWV.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF174LWV bigWig fold change over control ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF504AWB, ENCFF650MOB, ENCFF929JOF 259324081 ENCODE Processing Pipeline 4cc2c2c5ac10ca1281f8acc09dab6f6a https://www.encodeproject.org/files/ENCFF174LWV/@@download/ENCFF174LWV.bigWig hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF028KGK bigWig fold change over control ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF439NNR, ENCFF483RLD, ENCFF767FSP 258340584 ENCODE Processing Pipeline b9650cf0eadc228f625e0403e1a97759 https://www.encodeproject.org/files/ENCFF028KGK/@@download/ENCFF028KGK.bigWig GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF726YHM bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF504AWB, ENCFF650MOB 3041994 ENCODE Processing Pipeline 1a28c8a592152dca965a48085b9c329b https://www.encodeproject.org/files/ENCFF726YHM/@@download/ENCFF726YHM.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF285ILQ bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF439NNR, ENCFF767FSP 3083522 ENCODE Processing Pipeline 6cb236a6472a2e11d1a1b97e285498a4 https://www.encodeproject.org/files/ENCFF285ILQ/@@download/ENCFF285ILQ.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF758MFJ bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF483RLD, ENCFF767FSP 3037268 ENCODE Processing Pipeline 07ec6786ce2da62cd19b240242b92781 https://www.encodeproject.org/files/ENCFF758MFJ/@@download/ENCFF758MFJ.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF358BNT bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF517GFP 7141659 ENCODE Processing Pipeline f4d4d86e4c170f475f314c65fc6032cf https://www.encodeproject.org/files/ENCFF358BNT/@@download/ENCFF358BNT.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF188QKH bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF726YHM 7344479 ENCODE Processing Pipeline 1887848fea90d05afe820d32f599a175 https://www.encodeproject.org/files/ENCFF188QKH/@@download/ENCFF188QKH.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF051ILG bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF439NNR, ENCFF483RLD, ENCFF767FSP 4839291 ENCODE Processing Pipeline b3ef4775e7c0c36edb6a4a2c3c8e4e2d https://www.encodeproject.org/files/ENCFF051ILG/@@download/ENCFF051ILG.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF984PTF bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF761YWV 10714807 ENCODE Processing Pipeline caa81da5fead4ea3e776bb6edd0d02b8 https://www.encodeproject.org/files/ENCFF984PTF/@@download/ENCFF984PTF.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF836PBB bed narrowPeak conservative idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF517GFP, ENCFF726YHM, ENCFF761YWV 124991 ENCODE Processing Pipeline 0ef5794ebc84c309d877ac7933d8237d https://www.encodeproject.org/files/ENCFF836PBB/@@download/ENCFF836PBB.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF762GVY bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF285ILQ 7019435 ENCODE Processing Pipeline fe8bdf98418dcbc21f0f29a44ca890a8 https://www.encodeproject.org/files/ENCFF762GVY/@@download/ENCFF762GVY.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF494ZXY bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ILG 10689294 ENCODE Processing Pipeline d2660bd0043e640a5e153b14e61bcae8 https://www.encodeproject.org/files/ENCFF494ZXY/@@download/ENCFF494ZXY.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF487JHU bigBed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF758MFJ 7328957 ENCODE Processing Pipeline d7bfcfc7ff5d0710e4b771ff05e22d4d https://www.encodeproject.org/files/ENCFF487JHU/@@download/ENCFF487JHU.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF851QWV bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF836PBB 276128 ENCODE Processing Pipeline 5d77d59568462e5168c41ed554fe4f36 https://www.encodeproject.org/files/ENCFF851QWV/@@download/ENCFF851QWV.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF634AYU bed narrowPeak optimal idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF517GFP, ENCFF726YHM, ENCFF761YWV 156795 ENCODE Processing Pipeline 730d1f4239612dda93845a2c03f5db0d https://www.encodeproject.org/files/ENCFF634AYU/@@download/ENCFF634AYU.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF047QSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF634AYU 322934 ENCODE Processing Pipeline 71acf5e478336c967990644046e3c80b https://www.encodeproject.org/files/ENCFF047QSF/@@download/ENCFF047QSF.bigBed hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF371WLD bigBed narrowPeak conservative idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF695KNI 277752 ENCODE Processing Pipeline 50c6f7e0aca2c35689e5770a636cb045 https://www.encodeproject.org/files/ENCFF371WLD/@@download/ENCFF371WLD.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF695KNI bed narrowPeak conservative idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ILG, ENCFF285ILQ, ENCFF419RSJ, ENCFF758MFJ 125693 ENCODE Processing Pipeline 9a50d2ade59b083ac3fe633380293c9a https://www.encodeproject.org/files/ENCFF695KNI/@@download/ENCFF695KNI.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF970RNZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF700TLG 325482 ENCODE Processing Pipeline 98d77e8d4ed0bc942f2848e0a1ffd463 https://www.encodeproject.org/files/ENCFF970RNZ/@@download/ENCFF970RNZ.bigBed GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF700TLG bed narrowPeak optimal idr thresholded peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ILG, ENCFF285ILQ, ENCFF419RSJ, ENCFF758MFJ 158337 ENCODE Processing Pipeline ff1b2e4c23fa1e538b57ef5f01112acd https://www.encodeproject.org/files/ENCFF700TLG/@@download/ENCFF700TLG.bed.gz GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000XEN bam alignments ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XFD 873788446 Peggy Farnham, USC c04d23453a5092893ee2b7b0aa22cfbf https://www.encodeproject.org/files/ENCFF000XEN/@@download/ENCFF000XEN.bam hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEO bam alignments ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XFB 343207870 Peggy Farnham, USC c9886b8fdd7ae6ba7169dd0667893460 https://www.encodeproject.org/files/ENCFF000XEO/@@download/ENCFF000XEO.bam hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEP bigBed narrowPeak peaks ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIM 335143 Peggy Farnham, USC a4a9df0a7eff9a4eab0f9fff011a30ed https://www.encodeproject.org/files/ENCFF000XEP/@@download/ENCFF000XEP.bigBed hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEQ bigWig signal ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 326265289 Peggy Farnham, USC 37eecd5f8cc2be107324c8b997fc56ea https://www.encodeproject.org/files/ENCFF000XEQ/@@download/ENCFF000XEQ.bigWig hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XFB fastq reads ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 270709512 Peggy Farnham, USC ee78067714d68dfb533c7dbe8b6335b7 https://www.encodeproject.org/files/ENCFF000XFB/@@download/ENCFF000XFB.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XFD fastq reads ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 696331021 Peggy Farnham, USC 88dcf69e7a285d4e0fc0603ce57984a0 https://www.encodeproject.org/files/ENCFF000XFD/@@download/ENCFF000XFD.fastq.gz Illumina Genome Analyzer /files/ENCFF000XGP/ released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001VIM bed narrowPeak peaks ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 126001 Peggy Farnham, USC e055d51a85d34190c0f8b53dfdc1844e https://www.encodeproject.org/files/ENCFF001VIM/@@download/ENCFF001VIM.bed.gz hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CSM bed narrowPeak optimal idr thresholded peaks ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 246331 ENCODE Consortium Analysis Working Group 864ab74ed79ccb5bc75f7c1d9492a8fc https://www.encodeproject.org/files/ENCFF002CSM/@@download/ENCFF002CSM.bed.gz hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF587QGI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSM 766800 ENCODE Consortium 8438a2c5f527f212e09f1b7dbe4bd836 https://www.encodeproject.org/files/ENCFF587QGI/@@download/ENCFF587QGI.bigBed hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000YJD bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPR 706878875 Sherman Weissman, Yale 0ee593789527ee1ee273a27e6edc8f94 https://www.encodeproject.org/files/ENCFF000YJD/@@download/ENCFF000YJD.bam hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YJE bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMN 164349 Sherman Weissman, Yale c5ce43da2fd8347717c573884508e059 https://www.encodeproject.org/files/ENCFF000YJE/@@download/ENCFF000YJE.bigBed hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YJF bigWig signal ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 351005489 Sherman Weissman, Yale 5908f0e01e87873df0273cea4731a3db https://www.encodeproject.org/files/ENCFF000YJF/@@download/ENCFF000YJF.bigWig hg19 archived control low read depth, borderline replicate concordance, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YJG bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPP 856671555 Sherman Weissman, Yale 9bc0b851aa07d0ccc69dae09ab4681b6 https://www.encodeproject.org/files/ENCFF000YJG/@@download/ENCFF000YJG.bam hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPP fastq reads ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 738358744 Sherman Weissman, Yale 5a8362a6945efefc662939d54f503fcb https://www.encodeproject.org/files/ENCFF000YPP/@@download/ENCFF000YPP.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YPR fastq reads ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 525780014 Sherman Weissman, Yale 9907c618b69e3b9a94a9ef6f86b90c9d https://www.encodeproject.org/files/ENCFF000YPR/@@download/ENCFF000YPR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPZ/ released control low read depth, borderline replicate concordance, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VMN bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 48236 Sherman Weissman, Yale 50b07ca6d4aab39d6d36941093ee1e2f https://www.encodeproject.org/files/ENCFF001VMN/@@download/ENCFF001VMN.bed.gz hg19 archived control low read depth, borderline replicate concordance, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002CWB bed narrowPeak optimal idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 159843 ENCODE Consortium Analysis Working Group 434c22a477db41bc83f31dc6197c638d https://www.encodeproject.org/files/ENCFF002CWB/@@download/ENCFF002CWB.bed.gz hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF766WDI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWB 382505 ENCODE Consortium 373c184e80db4ecbb5eac5db4931b42e https://www.encodeproject.org/files/ENCFF766WDI/@@download/ENCFF766WDI.bigBed hg19 archived control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF814CHV bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPR, ENCFF643CGH 311839170 ENCODE Processing Pipeline f52e3384654aee76a5b31da2e8307bb6 https://www.encodeproject.org/files/ENCFF814CHV/@@download/ENCFF814CHV.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF106WPL bam unfiltered alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPR, ENCFF807MUK 707659593 ENCODE Processing Pipeline 0e91f6e970d15603c04e961c282bd719 https://www.encodeproject.org/files/ENCFF106WPL/@@download/ENCFF106WPL.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF774XWQ bam unfiltered alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPR, ENCFF643CGH 709878995 ENCODE Processing Pipeline b962f247df40571a88b9b8ed82515ddf https://www.encodeproject.org/files/ENCFF774XWQ/@@download/ENCFF774XWQ.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF691WRY bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPR, ENCFF807MUK 312256754 ENCODE Processing Pipeline b2738e913b4fa6d66dfbf324d0606664 https://www.encodeproject.org/files/ENCFF691WRY/@@download/ENCFF691WRY.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF892VDM bam unfiltered alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPP, ENCFF807MUK 790950096 ENCODE Processing Pipeline 5831f25d56d411f51fe07ae4a8faeffe https://www.encodeproject.org/files/ENCFF892VDM/@@download/ENCFF892VDM.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF793SYX bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPP, ENCFF807MUK 258911483 ENCODE Processing Pipeline d90f5d0e416d23627b664be522de71ea https://www.encodeproject.org/files/ENCFF793SYX/@@download/ENCFF793SYX.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF581CGZ bam unfiltered alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPP, ENCFF643CGH 793673746 ENCODE Processing Pipeline 02eb60ceff85c68c24e08dcc9f7a7c85 https://www.encodeproject.org/files/ENCFF581CGZ/@@download/ENCFF581CGZ.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF050LIC bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPP, ENCFF643CGH 258573795 ENCODE Processing Pipeline 3949567f5eb6ddf7e106d2fa95025932 https://www.encodeproject.org/files/ENCFF050LIC/@@download/ENCFF050LIC.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF305REQ bigWig fold change over control ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF691WRY 141315741 ENCODE Processing Pipeline 65a3e101f2aa73a9a3a8150048ffe33e https://www.encodeproject.org/files/ENCFF305REQ/@@download/ENCFF305REQ.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF157LRK bigWig signal p-value ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF482LDC, ENCFF814CHV 251774620 ENCODE Processing Pipeline 5d36b6c7f5c584b960218c3ff27028b7 https://www.encodeproject.org/files/ENCFF157LRK/@@download/ENCFF157LRK.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF797PHS bigWig signal p-value ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF793SYX 205585270 ENCODE Processing Pipeline 538028f62d9a10f88e2d9aa51e086c8f https://www.encodeproject.org/files/ENCFF797PHS/@@download/ENCFF797PHS.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF678SWM bigWig signal p-value ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF691WRY, ENCFF793SYX 269570077 ENCODE Processing Pipeline 48039f75a2259c778f2a1606bae7252f https://www.encodeproject.org/files/ENCFF678SWM/@@download/ENCFF678SWM.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF033ZBR bigWig signal p-value ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF691WRY 250791338 ENCODE Processing Pipeline f39528987f727b8535801aa58cfb3c19 https://www.encodeproject.org/files/ENCFF033ZBR/@@download/ENCFF033ZBR.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF843CDB bigWig signal p-value ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF050LIC, ENCFF482LDC, ENCFF814CHV 269152592 ENCODE Processing Pipeline 59f615a8082c1dcf003d9d867edc4b93 https://www.encodeproject.org/files/ENCFF843CDB/@@download/ENCFF843CDB.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF728EZD bigWig signal p-value ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF050LIC, ENCFF482LDC 203370566 ENCODE Processing Pipeline 6fd0e2c61642dd4ad2e12d403befdf33 https://www.encodeproject.org/files/ENCFF728EZD/@@download/ENCFF728EZD.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF825SKH bigWig fold change over control ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF691WRY, ENCFF793SYX 238843590 ENCODE Processing Pipeline c101854cfcf52aad59986a00231b2f17 https://www.encodeproject.org/files/ENCFF825SKH/@@download/ENCFF825SKH.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF187UYW bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF052OWI 5179043 ENCODE Processing Pipeline 27bbbb87aa8d7b41b296bc52c9f5621b https://www.encodeproject.org/files/ENCFF187UYW/@@download/ENCFF187UYW.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF700OSS bigWig fold change over control ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF482LDC, ENCFF814CHV 140704436 ENCODE Processing Pipeline 0fe01e33a11ea0f60376b3e6048f8c7d https://www.encodeproject.org/files/ENCFF700OSS/@@download/ENCFF700OSS.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF436KCV bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF691WRY, ENCFF793SYX 4310569 ENCODE Processing Pipeline cdf4ec1b8015e105b4b5e12560ceb1fa https://www.encodeproject.org/files/ENCFF436KCV/@@download/ENCFF436KCV.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF821GNR bigWig fold change over control ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF793SYX 115856383 ENCODE Processing Pipeline 4351b7e9940b6043dfe57c841d795b37 https://www.encodeproject.org/files/ENCFF821GNR/@@download/ENCFF821GNR.bigWig hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF955EAV bigWig fold change over control ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF050LIC, ENCFF482LDC 123051356 ENCODE Processing Pipeline 0c528356714924f1c5d8f4a40d8345c9 https://www.encodeproject.org/files/ENCFF955EAV/@@download/ENCFF955EAV.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF052OWI bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF691WRY 2438263 ENCODE Processing Pipeline 8e39fba942c4a657192a5716e9c84702 https://www.encodeproject.org/files/ENCFF052OWI/@@download/ENCFF052OWI.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF394RSM bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF793SYX 2131563 ENCODE Processing Pipeline 14ba65ae5c45d842c41cd3fc22b91023 https://www.encodeproject.org/files/ENCFF394RSM/@@download/ENCFF394RSM.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF435LLW bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF394RSM 4416053 ENCODE Processing Pipeline 1db6bffd0f3c633ebfaf96050bee8393 https://www.encodeproject.org/files/ENCFF435LLW/@@download/ENCFF435LLW.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF081FTI bigWig fold change over control ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF050LIC, ENCFF482LDC, ENCFF814CHV 238774275 ENCODE Processing Pipeline 9312a4ceb8b87e52ab1d31c9fa6d88f8 https://www.encodeproject.org/files/ENCFF081FTI/@@download/ENCFF081FTI.bigWig GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF618VRU bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF482LDC, ENCFF814CHV 2400958 ENCODE Processing Pipeline 9213baf30ca20a911d24ec577c36c487 https://www.encodeproject.org/files/ENCFF618VRU/@@download/ENCFF618VRU.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF192BTP bed narrowPeak optimal idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF052OWI, ENCFF394RSM, ENCFF436KCV 111175 ENCODE Processing Pipeline f6d9722fc246ece97dc02a364d78a156 https://www.encodeproject.org/files/ENCFF192BTP/@@download/ENCFF192BTP.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF457CKY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF527WUV 198341 ENCODE Processing Pipeline 04bf461d50900818e8d553b56941875b https://www.encodeproject.org/files/ENCFF457CKY/@@download/ENCFF457CKY.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF569WKK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF192BTP 265288 ENCODE Processing Pipeline 9b5873efb24acd15129b48f52522894f https://www.encodeproject.org/files/ENCFF569WKK/@@download/ENCFF569WKK.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF546PAM bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF050LIC, ENCFF482LDC 2119187 ENCODE Processing Pipeline 6fb8c400d06b6c74f5c940433c13b188 https://www.encodeproject.org/files/ENCFF546PAM/@@download/ENCFF546PAM.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF154BPB bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436KCV 10296418 ENCODE Processing Pipeline ac73077ff3d4eff43770c34b0b8c04aa https://www.encodeproject.org/files/ENCFF154BPB/@@download/ENCFF154BPB.bigBed hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF527WUV bed narrowPeak conservative idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF052OWI, ENCFF394RSM, ENCFF436KCV 93899 ENCODE Processing Pipeline 32d291509934a841c40d53ff33256853 https://www.encodeproject.org/files/ENCFF527WUV/@@download/ENCFF527WUV.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF023XYC bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF050LIC, ENCFF482LDC, ENCFF814CHV 4296452 ENCODE Processing Pipeline 7babc54db99f0be5e36fd9335d46b925 https://www.encodeproject.org/files/ENCFF023XYC/@@download/ENCFF023XYC.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF635JJR bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF618VRU 5103844 ENCODE Processing Pipeline 966f5fa96b14baa8d94f089a30e2405b https://www.encodeproject.org/files/ENCFF635JJR/@@download/ENCFF635JJR.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF234MAW bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF546PAM 4400160 ENCODE Processing Pipeline 4b787aa64eaf63acceeeb624f6af4109 https://www.encodeproject.org/files/ENCFF234MAW/@@download/ENCFF234MAW.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF440SQT bigBed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023XYC 10270408 ENCODE Processing Pipeline 7f7d015902dfdc64fa74bdf4ae1c5ba3 https://www.encodeproject.org/files/ENCFF440SQT/@@download/ENCFF440SQT.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF673OJN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF058LTT 193104 ENCODE Processing Pipeline d89b54551e98f5b1e172d756a74039a0 https://www.encodeproject.org/files/ENCFF673OJN/@@download/ENCFF673OJN.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF058LTT bed narrowPeak conservative idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023XYC, ENCFF419RSJ, ENCFF546PAM, ENCFF618VRU 90163 ENCODE Processing Pipeline d05615565c6f8b7164cfb8592e32fa37 https://www.encodeproject.org/files/ENCFF058LTT/@@download/ENCFF058LTT.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF881AVX bed narrowPeak optimal idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023XYC, ENCFF419RSJ, ENCFF546PAM, ENCFF618VRU 109084 ENCODE Processing Pipeline 53d7ceedc495abecf48529eda56f93a9 https://www.encodeproject.org/files/ENCFF881AVX/@@download/ENCFF881AVX.bed.gz GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF614GYI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF881AVX 218795 ENCODE Processing Pipeline 035ffde8be219adec7c7ebe5da21fcb8 https://www.encodeproject.org/files/ENCFF614GYI/@@download/ENCFF614GYI.bigBed GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000QTZ bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QUH 142586626 Richard Myers, HAIB 77fa05ed5740e1398505fbdab730b328 https://www.encodeproject.org/files/ENCFF000QTZ/@@download/ENCFF000QTZ.bam hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF000QUA bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QUL 178804137 Richard Myers, HAIB 7b59c94a7dd0829d6ead85e6f4f82c0e https://www.encodeproject.org/files/ENCFF000QUA/@@download/ENCFF000QUA.bam hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF000QUB bigBed broadPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UOJ 518057 Richard Myers, HAIB 5823377e4cd8a3cd5fb4eddd32ab54f7 https://www.encodeproject.org/files/ENCFF000QUB/@@download/ENCFF000QUB.bigBed hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF000QUC bigBed broadPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UOK 168616 Richard Myers, HAIB 86941bea2661de5b08f0d26eeb0fb0e8 https://www.encodeproject.org/files/ENCFF000QUC/@@download/ENCFF000QUC.bigBed hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF000QUE bigWig raw signal ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 16684938 Richard Myers, HAIB 735413b94fb2274cf33f0f2e4d603051 https://www.encodeproject.org/files/ENCFF000QUE/@@download/ENCFF000QUE.bigWig hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth extremely low read depth, extremely low read length ENCFF000QUF bigWig raw signal ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 5249374 Richard Myers, HAIB cb5abadbe4dbc56d5ff390b0edd8aae6 https://www.encodeproject.org/files/ENCFF000QUF/@@download/ENCFF000QUF.bigWig hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF000QUH fastq reads ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 25 single-ended 94230802 Richard Myers, HAIB 10034ab185e1471f09bc7b4312deb93f https://www.encodeproject.org/files/ENCFF000QUH/@@download/ENCFF000QUH.fastq.gz Illumina Genome Analyzer /files/ENCFF000QVQ/ released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF000QUL fastq reads ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 25 single-ended 133367966 Richard Myers, HAIB 2182bae19c948a9875e1c2ba9f0d7bfc https://www.encodeproject.org/files/ENCFF000QUL/@@download/ENCFF000QUL.fastq.gz Illumina Genome Analyzer /files/ENCFF000QVQ/ released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF001UOJ bed broadPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 1 288491 Richard Myers, HAIB 9ba824fba361eddc9b23c60c8b8f95d4 https://www.encodeproject.org/files/ENCFF001UOJ/@@download/ENCFF001UOJ.bed.gz hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF001UOK bed broadPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 1 72854 Richard Myers, HAIB f8c08421c87a500fd63603b5a82d5f60 https://www.encodeproject.org/files/ENCFF001UOK/@@download/ENCFF001UOK.bed.gz hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth extremely low read depth, extremely low read length ENCFF002CND bed narrowPeak optimal idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 378426 ENCODE Consortium Analysis Working Group c51728b87f0d1f605b9000138b0da558 https://www.encodeproject.org/files/ENCFF002CND/@@download/ENCFF002CND.bed.gz hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read depth extremely low read depth, extremely low read length ENCFF659ROO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CND 795780 ENCODE Consortium 498c0f709320d7635d9b10f7964cc68a https://www.encodeproject.org/files/ENCFF659ROO/@@download/ENCFF659ROO.bigBed hg19 archived control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF320MKV bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QUH, ENCFF807MUK 119377286 ENCODE Processing Pipeline 1f9fbd6af9cb3d619e6416b6e3477830 https://www.encodeproject.org/files/ENCFF320MKV/@@download/ENCFF320MKV.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF997XTV bam unfiltered alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QUH, ENCFF643CGH 166360087 ENCODE Processing Pipeline 3c3c88604f9cc2feae0a1deb649ea35a https://www.encodeproject.org/files/ENCFF997XTV/@@download/ENCFF997XTV.bam GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF054FYX bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QUL, ENCFF807MUK 119405922 ENCODE Processing Pipeline d8d919ff8b169c557ce9f5f4a319308b https://www.encodeproject.org/files/ENCFF054FYX/@@download/ENCFF054FYX.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF013ZLL bam unfiltered alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QUH, ENCFF807MUK 166018535 ENCODE Processing Pipeline afd962000f101211927a9ad1e5fc448d https://www.encodeproject.org/files/ENCFF013ZLL/@@download/ENCFF013ZLL.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF966NNP bam unfiltered alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QUL, ENCFF643CGH 224200183 ENCODE Processing Pipeline dfec274729f68ad714ad1cba921856c1 https://www.encodeproject.org/files/ENCFF966NNP/@@download/ENCFF966NNP.bam GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF361ONE bam unfiltered alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QUL, ENCFF807MUK 223962949 ENCODE Processing Pipeline 547caf3bfc027d0f8f9adeccd32ea292 https://www.encodeproject.org/files/ENCFF361ONE/@@download/ENCFF361ONE.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF192KRY bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QUL, ENCFF643CGH 119171175 ENCODE Processing Pipeline e8287f3f0b72c37629bd6f0f3357eeb5 https://www.encodeproject.org/files/ENCFF192KRY/@@download/ENCFF192KRY.bam GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF726LJT bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QUH, ENCFF643CGH 118996109 ENCODE Processing Pipeline 93a2e1448149a2ce202af35867564900 https://www.encodeproject.org/files/ENCFF726LJT/@@download/ENCFF726LJT.bam GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF978PPO bigWig fold change over control ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054FYX, ENCFF294SLK, ENCFF320MKV 248087137 ENCODE Processing Pipeline fa017694172eeba9b8c7895ee1c0d0a4 https://www.encodeproject.org/files/ENCFF978PPO/@@download/ENCFF978PPO.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF178HUV bigWig fold change over control ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294SLK, ENCFF320MKV 191340314 ENCODE Processing Pipeline 5f7bd2a038b6e7a05a6e0a7e1976b66f https://www.encodeproject.org/files/ENCFF178HUV/@@download/ENCFF178HUV.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF987WUX bigWig fold change over control ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF054FYX, ENCFF294SLK 109845650 ENCODE Processing Pipeline 64381944e3d915f9b2484442e7f8f5be https://www.encodeproject.org/files/ENCFF987WUX/@@download/ENCFF987WUX.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF211YZA bigBed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF229DJA 12811163 ENCODE Processing Pipeline 29d35486835e791dd3eedd9645d3d5fe https://www.encodeproject.org/files/ENCFF211YZA/@@download/ENCFF211YZA.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF395BZZ bed narrowPeak optimal idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF229DJA, ENCFF882KTD, ENCFF943NWC 302567 ENCODE Processing Pipeline 4e19b95df0695a93ba3dc403d0d64995 https://www.encodeproject.org/files/ENCFF395BZZ/@@download/ENCFF395BZZ.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF943NWC bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294SLK, ENCFF320MKV 4381800 ENCODE Processing Pipeline ff709f8932822e4c965020216e08c271 https://www.encodeproject.org/files/ENCFF943NWC/@@download/ENCFF943NWC.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF882KTD bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF054FYX, ENCFF294SLK 1711738 ENCODE Processing Pipeline f87f91d68e18cab8f0f3ffd8e24d22c4 https://www.encodeproject.org/files/ENCFF882KTD/@@download/ENCFF882KTD.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF715XII bigBed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF943NWC 10153306 ENCODE Processing Pipeline f3e29d90ac9285c75ad1f3018ba8207c https://www.encodeproject.org/files/ENCFF715XII/@@download/ENCFF715XII.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF186CRI bigBed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF882KTD 3684442 ENCODE Processing Pipeline dc7765eed9e3f3dd4372553e0448172f https://www.encodeproject.org/files/ENCFF186CRI/@@download/ENCFF186CRI.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF260VMG bed narrowPeak conservative idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF229DJA, ENCFF882KTD, ENCFF943NWC 195247 ENCODE Processing Pipeline 030040544c061b281aacaaf501894616 https://www.encodeproject.org/files/ENCFF260VMG/@@download/ENCFF260VMG.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF140YYQ bigWig signal p-value ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054FYX, ENCFF294SLK, ENCFF320MKV 423183876 ENCODE Processing Pipeline 75d90812ab8d0937f6aa628b50d4b286 https://www.encodeproject.org/files/ENCFF140YYQ/@@download/ENCFF140YYQ.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF794IDP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF260VMG 396916 ENCODE Processing Pipeline c9f61bce54f4fc548bcfdd6431b4713f https://www.encodeproject.org/files/ENCFF794IDP/@@download/ENCFF794IDP.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF334FDL bigWig signal p-value ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294SLK, ENCFF320MKV 333935137 ENCODE Processing Pipeline f9f887a30420a9ced1c35ab0f7bcbbb7 https://www.encodeproject.org/files/ENCFF334FDL/@@download/ENCFF334FDL.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF229DJA bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF054FYX, ENCFF294SLK, ENCFF320MKV 5563585 ENCODE Processing Pipeline 7574fc04e21d8a4471be105978fc595b https://www.encodeproject.org/files/ENCFF229DJA/@@download/ENCFF229DJA.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF299QQS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF395BZZ 546857 ENCODE Processing Pipeline 2533dac81d00d97a289b43d9e03c6bd2 https://www.encodeproject.org/files/ENCFF299QQS/@@download/ENCFF299QQS.bigBed hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF011ZOS bigWig signal p-value ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF054FYX, ENCFF294SLK 329990655 ENCODE Processing Pipeline 7152e1ca004a3d42d6cee36e5933bd66 https://www.encodeproject.org/files/ENCFF011ZOS/@@download/ENCFF011ZOS.bigWig hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF131XTA bigWig fold change over control ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF192KRY, ENCFF240DER 109625743 ENCODE Processing Pipeline 8f81e6c2a1f1aee352c1c364502d9811 https://www.encodeproject.org/files/ENCFF131XTA/@@download/ENCFF131XTA.bigWig GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF614WPD bigBed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF617HLK 9988483 ENCODE Processing Pipeline 3a5d243420187e2203dd404f1391af25 https://www.encodeproject.org/files/ENCFF614WPD/@@download/ENCFF614WPD.bigBed GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF726AIC bigWig signal p-value ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240DER, ENCFF726LJT 330455797 ENCODE Processing Pipeline ff861fd3e7e0328cef67545b19a98a7f https://www.encodeproject.org/files/ENCFF726AIC/@@download/ENCFF726AIC.bigWig GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF891NFE bigWig signal p-value ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF192KRY, ENCFF240DER 331351863 ENCODE Processing Pipeline a5eda9e7fe9297108894d555af38c1e4 https://www.encodeproject.org/files/ENCFF891NFE/@@download/ENCFF891NFE.bigWig GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF933QAU bigWig signal p-value ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF192KRY, ENCFF240DER, ENCFF726LJT 388042805 ENCODE Processing Pipeline 6dfacba830ccedd9dd38732d5226db18 https://www.encodeproject.org/files/ENCFF933QAU/@@download/ENCFF933QAU.bigWig GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF019EHP bigWig fold change over control ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240DER, ENCFF726LJT 190368153 ENCODE Processing Pipeline b33a5c3b9bc05ca5197e8e6249ae64b3 https://www.encodeproject.org/files/ENCFF019EHP/@@download/ENCFF019EHP.bigWig GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF951WXZ bigWig fold change over control ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF192KRY, ENCFF240DER, ENCFF726LJT 251682333 ENCODE Processing Pipeline a5dbfe8118ea4b70b92deae3132f02b1 https://www.encodeproject.org/files/ENCFF951WXZ/@@download/ENCFF951WXZ.bigWig GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF617HLK bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF240DER, ENCFF726LJT 4243866 ENCODE Processing Pipeline b1f44ad08fd1b6279cd02bf2b6374440 https://www.encodeproject.org/files/ENCFF617HLK/@@download/ENCFF617HLK.bed.gz GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF472UVR bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF192KRY, ENCFF240DER 1706708 ENCODE Processing Pipeline 40b59df1e248e2563eb30ffe96cf7eb2 https://www.encodeproject.org/files/ENCFF472UVR/@@download/ENCFF472UVR.bed.gz GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF425LSA bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF192KRY, ENCFF240DER, ENCFF726LJT 5644979 ENCODE Processing Pipeline e8de2f959f496e0883ee293b90bcc06d https://www.encodeproject.org/files/ENCFF425LSA/@@download/ENCFF425LSA.bed.gz GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF932TGB bigBed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF472UVR 3679565 ENCODE Processing Pipeline 4b0202b5856a964dd16cc98744f92cb0 https://www.encodeproject.org/files/ENCFF932TGB/@@download/ENCFF932TGB.bigBed GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF808LMU bigBed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF425LSA 12914546 ENCODE Processing Pipeline 722e8172a05ab32184d4e4fad0f78b23 https://www.encodeproject.org/files/ENCFF808LMU/@@download/ENCFF808LMU.bigBed GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF349WGE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067LTM 557628 ENCODE Processing Pipeline fcf2703f6c8ebe41c98e443307f5fe8f https://www.encodeproject.org/files/ENCFF349WGE/@@download/ENCFF349WGE.bigBed GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF067LTM bed narrowPeak optimal idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF425LSA, ENCFF472UVR, ENCFF617HLK 307868 ENCODE Processing Pipeline f5e4e87d8801efc8252cbf5924c6243a https://www.encodeproject.org/files/ENCFF067LTM/@@download/ENCFF067LTM.bed.gz GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF926GAC bed narrowPeak conservative idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF425LSA, ENCFF472UVR, ENCFF617HLK 196040 ENCODE Processing Pipeline 4e31fb4d46692dabe3e945836a070fbf https://www.encodeproject.org/files/ENCFF926GAC/@@download/ENCFF926GAC.bed.gz GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF354YIN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF926GAC 399111 ENCODE Processing Pipeline c9bfc2c5ebbd4c53025fb7ef4956834c https://www.encodeproject.org/files/ENCFF354YIN/@@download/ENCFF354YIN.bigBed GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF705WBN fastq reads ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 1 50 single-ended 1537247195 Richard Myers, HAIB 68062d104616f659a491ee30b1a372fa SRA:SRR5339281 https://www.encodeproject.org/files/ENCFF705WBN/@@download/ENCFF705WBN.fastq.gz Illumina HiSeq 2000 /files/ENCFF400XMH/ released moderate library complexity severe bottlenecking ENCFF371FHT bigWig signal p-value ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 928832349 ENCODE Processing Pipeline 3f795e95bf6ea4da5b1b103af2fc9807 https://www.encodeproject.org/files/ENCFF371FHT/@@download/ENCFF371FHT.bigWig hg19 released moderate library complexity severe bottlenecking ENCFF615AOC bigWig fold change over control ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 780663123 ENCODE Processing Pipeline 45a4864ed94155e87981650ef0a28a12 https://www.encodeproject.org/files/ENCFF615AOC/@@download/ENCFF615AOC.bigWig hg19 released moderate library complexity severe bottlenecking ENCFF049PKJ fastq reads ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 1 50 single-ended 1264689902 Richard Myers, HAIB ffd2de0b7ae4669dc517cda106247489 SRA:SRR5339280 https://www.encodeproject.org/files/ENCFF049PKJ/@@download/ENCFF049PKJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF774EJH/ released moderate library complexity severe bottlenecking ENCFF475TEH bam unfiltered alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF643CGH, ENCFF705WBN 1602610537 ENCODE Processing Pipeline 069cf388eb1708a94d81941d80ce11ef https://www.encodeproject.org/files/ENCFF475TEH/@@download/ENCFF475TEH.bam GRCh38 released moderate library complexity severe bottlenecking ENCFF797FVU bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF643CGH, ENCFF705WBN 1172487039 ENCODE Processing Pipeline dcf2b8253ee40bc7c9ae000632dae3b8 https://www.encodeproject.org/files/ENCFF797FVU/@@download/ENCFF797FVU.bam GRCh38 released moderate library complexity severe bottlenecking ENCFF977KTE bigWig signal p-value ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF063BAN, ENCFF213VVQ, ENCFF797FVU 1012904130 ENCODE Processing Pipeline e4fee537b444c62b49c85a9fa270d572 https://www.encodeproject.org/files/ENCFF977KTE/@@download/ENCFF977KTE.bigWig GRCh38 released moderate library complexity severe bottlenecking ENCFF482NEN bigWig signal p-value ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF063BAN, ENCFF202BLM, ENCFF213VVQ 960389990 ENCODE Processing Pipeline bfabdbceb75cb9c89d06505d45196256 https://www.encodeproject.org/files/ENCFF482NEN/@@download/ENCFF482NEN.bigWig GRCh38 released moderate library complexity severe bottlenecking ENCFF047ZUW bigWig signal p-value ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF063BAN, ENCFF202BLM, ENCFF213VVQ, ENCFF797FVU 1197709859 ENCODE Processing Pipeline b0815e19ceeb802de6aba4fab7c3c473 https://www.encodeproject.org/files/ENCFF047ZUW/@@download/ENCFF047ZUW.bigWig GRCh38 released moderate library complexity severe bottlenecking ENCFF306KZM bigWig fold change over control ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF063BAN, ENCFF213VVQ, ENCFF797FVU 778353855 ENCODE Processing Pipeline 5c807e97c47f3ee2d84b756e10ff8fd9 https://www.encodeproject.org/files/ENCFF306KZM/@@download/ENCFF306KZM.bigWig GRCh38 released moderate library complexity severe bottlenecking ENCFF902DYB bigWig fold change over control ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF063BAN, ENCFF202BLM, ENCFF213VVQ 789460599 ENCODE Processing Pipeline 8ef4f6419b51d17fb4ee43353a806617 https://www.encodeproject.org/files/ENCFF902DYB/@@download/ENCFF902DYB.bigWig GRCh38 released moderate library complexity severe bottlenecking ENCFF677HOP bigWig fold change over control ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF063BAN, ENCFF202BLM, ENCFF213VVQ, ENCFF797FVU 1143595392 ENCODE Processing Pipeline 8bf3b2261cf991309e1dfb64638c70cd https://www.encodeproject.org/files/ENCFF677HOP/@@download/ENCFF677HOP.bigWig GRCh38 released moderate library complexity severe bottlenecking ENCFF034XAT bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF063BAN, ENCFF213VVQ, ENCFF797FVU 6735210 ENCODE Processing Pipeline e6fb8b79b33ac42e1687fc8c2a64c085 https://www.encodeproject.org/files/ENCFF034XAT/@@download/ENCFF034XAT.bed.gz GRCh38 released moderate library complexity severe bottlenecking ENCFF009DGB bigBed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF034XAT 13035124 ENCODE Processing Pipeline 46ff283683c31908f7fbbf80b6830a66 https://www.encodeproject.org/files/ENCFF009DGB/@@download/ENCFF009DGB.bigBed GRCh38 released moderate library complexity severe bottlenecking ENCFF896YKO bam unfiltered alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF705WBN, ENCFF807MUK 1598810750 ENCODE Processing Pipeline 42d843a008b55234795bfb71fba5fdc5 https://www.encodeproject.org/files/ENCFF896YKO/@@download/ENCFF896YKO.bam hg19 released moderate library complexity severe bottlenecking ENCFF099QLM bam unfiltered alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF807MUK 1586810927 ENCODE Processing Pipeline e9e8c621e893360cfcf2d88d51bbbd67 https://www.encodeproject.org/files/ENCFF099QLM/@@download/ENCFF099QLM.bam hg19 released moderate library complexity severe bottlenecking ENCFF392GEM bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF807MUK 1077868323 ENCODE Processing Pipeline 774cad206354fe047d5176c0b0ccec8e https://www.encodeproject.org/files/ENCFF392GEM/@@download/ENCFF392GEM.bam hg19 released moderate library complexity severe bottlenecking ENCFF986BOM bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF705WBN, ENCFF807MUK 1173275706 ENCODE Processing Pipeline aa0684256da83e7371db3ac8fd227822 https://www.encodeproject.org/files/ENCFF986BOM/@@download/ENCFF986BOM.bam hg19 released moderate library complexity severe bottlenecking ENCFF678AVD bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF063BAN, ENCFF202BLM, ENCFF213VVQ 6599752 ENCODE Processing Pipeline 43f8386b9e079217d0528038eb0f08c5 https://www.encodeproject.org/files/ENCFF678AVD/@@download/ENCFF678AVD.bed.gz GRCh38 released moderate library complexity severe bottlenecking ENCFF079HTI bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF063BAN, ENCFF202BLM, ENCFF213VVQ, ENCFF797FVU 7021816 ENCODE Processing Pipeline 05284c0723c4ea830f572b6823a293ca https://www.encodeproject.org/files/ENCFF079HTI/@@download/ENCFF079HTI.bed.gz GRCh38 released moderate library complexity severe bottlenecking ENCFF390ZUZ bigBed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF678AVD 13242361 ENCODE Processing Pipeline e2d721cf70c6c0883853779073e36db9 https://www.encodeproject.org/files/ENCFF390ZUZ/@@download/ENCFF390ZUZ.bigBed GRCh38 released moderate library complexity severe bottlenecking ENCFF107LLK bigBed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF079HTI 13185690 ENCODE Processing Pipeline fda5860b1b6d0b4612ef83f30af17f99 https://www.encodeproject.org/files/ENCFF107LLK/@@download/ENCFF107LLK.bigBed GRCh38 released moderate library complexity severe bottlenecking ENCFF912CZG bed narrowPeak conservative idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF034XAT, ENCFF079HTI, ENCFF419RSJ, ENCFF678AVD 425372 ENCODE Processing Pipeline 066774c1505a15379be88e6cea295b07 https://www.encodeproject.org/files/ENCFF912CZG/@@download/ENCFF912CZG.bed.gz GRCh38 released moderate library complexity severe bottlenecking ENCFF545JRL bigBed narrowPeak conservative idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF912CZG 851113 ENCODE Processing Pipeline 9166f2eb3354ef626f500ead81fb9aac https://www.encodeproject.org/files/ENCFF545JRL/@@download/ENCFF545JRL.bigBed GRCh38 released moderate library complexity severe bottlenecking ENCFF718DFX bed narrowPeak optimal idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF034XAT, ENCFF079HTI, ENCFF419RSJ, ENCFF678AVD 513563 ENCODE Processing Pipeline bd4007ae01d0f255d400fec344b2c2e9 https://www.encodeproject.org/files/ENCFF718DFX/@@download/ENCFF718DFX.bed.gz GRCh38 released moderate library complexity severe bottlenecking ENCFF317JJX bigBed narrowPeak optimal idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF718DFX 981711 ENCODE Processing Pipeline f84257215634dae3572010f240ab6df2 https://www.encodeproject.org/files/ENCFF317JJX/@@download/ENCFF317JJX.bigBed GRCh38 released moderate library complexity severe bottlenecking ENCFF202BLM bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF643CGH 1077476746 ENCODE Processing Pipeline af75b092ea482b47232baa520cdee9fd https://www.encodeproject.org/files/ENCFF202BLM/@@download/ENCFF202BLM.bam GRCh38 released moderate library complexity severe bottlenecking ENCFF417ZUD bam unfiltered alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF807MUK 1410409245 ENCODE Processing Pipeline 4844aa82717cbfa527ffe7fe2107d4ee https://www.encodeproject.org/files/ENCFF417ZUD/@@download/ENCFF417ZUD.bam hg19 released moderate library complexity severe bottlenecking ENCFF671VUD bam unfiltered alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF643CGH 1415826214 ENCODE Processing Pipeline 6d6511257a005a4d3999eb35421aba65 https://www.encodeproject.org/files/ENCFF671VUD/@@download/ENCFF671VUD.bam GRCh38 released moderate library complexity severe bottlenecking ENCFF225PIB bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF807MUK 1077868308 ENCODE Processing Pipeline bb6fd225d050e728ea04ed2e28372a81 https://www.encodeproject.org/files/ENCFF225PIB/@@download/ENCFF225PIB.bam hg19 released moderate library complexity severe bottlenecking ENCFF037FVZ bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 7031469 ENCODE Processing Pipeline feb220c189b97d59af29b24ea583b4fe https://www.encodeproject.org/files/ENCFF037FVZ/@@download/ENCFF037FVZ.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF635OWB bigWig signal p-value ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD 921703384 ENCODE Processing Pipeline db35f3286effc145de2a9830a1508e5d https://www.encodeproject.org/files/ENCFF635OWB/@@download/ENCFF635OWB.bigWig hg19 released moderate library complexity severe bottlenecking ENCFF528UCI bigWig signal p-value ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 1060346693 ENCODE Processing Pipeline 2ae1a36e677882813fdb25a3bd3d4264 https://www.encodeproject.org/files/ENCFF528UCI/@@download/ENCFF528UCI.bigWig hg19 released moderate library complexity severe bottlenecking ENCFF160OZE bigWig fold change over control ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD 787139477 ENCODE Processing Pipeline 910ee2aa263fff8cc0a82aa814124af1 https://www.encodeproject.org/files/ENCFF160OZE/@@download/ENCFF160OZE.bigWig hg19 released moderate library complexity severe bottlenecking ENCFF614EKZ bigWig fold change over control ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 1191277090 ENCODE Processing Pipeline 898c57514a1dec8c7277198164bc3ea3 https://www.encodeproject.org/files/ENCFF614EKZ/@@download/ENCFF614EKZ.bigWig hg19 released moderate library complexity severe bottlenecking ENCFF052IOC bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 6746160 ENCODE Processing Pipeline bd04ead3bc991eac41605e6d188659e2 https://www.encodeproject.org/files/ENCFF052IOC/@@download/ENCFF052IOC.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF514IDT bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD 6597708 ENCODE Processing Pipeline a21edc00eb3fd7ccf328b299898d43ae https://www.encodeproject.org/files/ENCFF514IDT/@@download/ENCFF514IDT.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF491WIY bigBed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF052IOC 13030598 ENCODE Processing Pipeline 3fe7b722fb92a848f925e5f6c73bce8a https://www.encodeproject.org/files/ENCFF491WIY/@@download/ENCFF491WIY.bigBed hg19 released moderate library complexity severe bottlenecking ENCFF892CNV bigBed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF514IDT 13233949 ENCODE Processing Pipeline f8865a9261a95b5c177ae316360eafcc https://www.encodeproject.org/files/ENCFF892CNV/@@download/ENCFF892CNV.bigBed hg19 released moderate library complexity severe bottlenecking ENCFF998JIP bigBed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF037FVZ 13193515 ENCODE Processing Pipeline a396a2ddc1951db633f78202e7c8de39 https://www.encodeproject.org/files/ENCFF998JIP/@@download/ENCFF998JIP.bigBed hg19 released moderate library complexity severe bottlenecking ENCFF829KBM bed narrowPeak conservative idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF037FVZ, ENCFF052IOC, ENCFF514IDT 425262 ENCODE Processing Pipeline 37a322022254c65d6e7c7f996f3dd4ff https://www.encodeproject.org/files/ENCFF829KBM/@@download/ENCFF829KBM.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF732WDZ bigBed narrowPeak conservative idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF829KBM 851861 ENCODE Processing Pipeline fd59215cfa450efa251402fa4915bf83 https://www.encodeproject.org/files/ENCFF732WDZ/@@download/ENCFF732WDZ.bigBed hg19 released moderate library complexity severe bottlenecking ENCFF569SHP bigBed narrowPeak optimal idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF558DSF 972908 ENCODE Processing Pipeline 3d83f5971cb4d32c0e236a9a5b72166e https://www.encodeproject.org/files/ENCFF569SHP/@@download/ENCFF569SHP.bigBed hg19 released moderate library complexity severe bottlenecking ENCFF558DSF bed narrowPeak optimal idr thresholded peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1, 2 ENCFF001TDO, ENCFF037FVZ, ENCFF052IOC, ENCFF514IDT 507490 ENCODE Processing Pipeline 082127ee84bc475cf8b8969343b39cd0 https://www.encodeproject.org/files/ENCFF558DSF/@@download/ENCFF558DSF.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF000NGT bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NHI 1677195167 Richard Myers, HAIB c9ab5a48a9a2aa940f85e54c77f1ca78 https://www.encodeproject.org/files/ENCFF000NGT/@@download/ENCFF000NGT.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NGU bigBed broadPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TTN 221355 Richard Myers, HAIB d4938950e6a0bb159f2d366270a8a622 https://www.encodeproject.org/files/ENCFF000NGU/@@download/ENCFF000NGU.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NGV bigBed broadPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TTO 244825 Richard Myers, HAIB c3136c2f810e8ed8c7b264076da9da84 https://www.encodeproject.org/files/ENCFF000NGV/@@download/ENCFF000NGV.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NGW bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NHG 1312059815 Richard Myers, HAIB c281707a076a25809a057c5eb8cc979a https://www.encodeproject.org/files/ENCFF000NGW/@@download/ENCFF000NGW.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NGX bigWig raw signal ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 1 16250661 Richard Myers, HAIB ef821b16a64333c19679414b5f03948e https://www.encodeproject.org/files/ENCFF000NGX/@@download/ENCFF000NGX.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000NGZ bigWig raw signal ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 1 13602952 Richard Myers, HAIB e1980c362771ac91135915ea0923cd89 https://www.encodeproject.org/files/ENCFF000NGZ/@@download/ENCFF000NGZ.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000NHG fastq reads ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1259009468 Richard Myers, HAIB 51e84bb2faaff699fbdc20941cd15a10 https://www.encodeproject.org/files/ENCFF000NHG/@@download/ENCFF000NHG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF000NHI fastq reads ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1692796569 Richard Myers, HAIB d713c309a0c9b000f25a067b477f6795 https://www.encodeproject.org/files/ENCFF000NHI/@@download/ENCFF000NHI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF001TTN bed broadPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 1 117129 Richard Myers, HAIB 1b616994f2f397853ba03a1984014bb0 https://www.encodeproject.org/files/ENCFF001TTN/@@download/ENCFF001TTN.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF001TTO bed broadPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 1 128548 Richard Myers, HAIB 6cad4e8a3ed3cf463bc5b327cfe0c019 https://www.encodeproject.org/files/ENCFF001TTO/@@download/ENCFF001TTO.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF002CFZ bed narrowPeak optimal idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 122023 ENCODE Consortium Analysis Working Group b22ea9d58598b742790c5b6682dda181 https://www.encodeproject.org/files/ENCFF002CFZ/@@download/ENCFF002CFZ.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF967NVM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFZ 390068 ENCODE Consortium ac97077b7731c1c9106c6cbd1c1997cf https://www.encodeproject.org/files/ENCFF967NVM/@@download/ENCFF967NVM.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF842ISP bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHG, ENCFF643CGH 913396409 ENCODE Processing Pipeline 820a5dd379440e4198aa83049231698f https://www.encodeproject.org/files/ENCFF842ISP/@@download/ENCFF842ISP.bam GRCh38 released low read length biological replicates with identical biosample ENCFF766RXA bam unfiltered alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHG, ENCFF643CGH 1405656183 ENCODE Processing Pipeline ce76b040b178dddd2561bfd0f0cf0950 https://www.encodeproject.org/files/ENCFF766RXA/@@download/ENCFF766RXA.bam GRCh38 released low read length biological replicates with identical biosample ENCFF089EEX bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHI, ENCFF643CGH 1093076456 ENCODE Processing Pipeline 5509e07e0c0b4075c9a423a2fc7ee6a4 https://www.encodeproject.org/files/ENCFF089EEX/@@download/ENCFF089EEX.bam GRCh38 released low read length biological replicates with identical biosample ENCFF228VUS bam unfiltered alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHI, ENCFF643CGH 1820285869 ENCODE Processing Pipeline cb0a25c37af7004db96961eb18f22ed8 https://www.encodeproject.org/files/ENCFF228VUS/@@download/ENCFF228VUS.bam GRCh38 released low read length biological replicates with identical biosample ENCFF465JTP bam unfiltered alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHG, ENCFF807MUK 1401821278 ENCODE Processing Pipeline f29c52edd995206a5de1b7f9a3a789e4 https://www.encodeproject.org/files/ENCFF465JTP/@@download/ENCFF465JTP.bam hg19 released low read length biological replicates with identical biosample ENCFF139WTG bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHG, ENCFF807MUK 913451977 ENCODE Processing Pipeline 26918aef90b57a33d8a90c494ac67c06 https://www.encodeproject.org/files/ENCFF139WTG/@@download/ENCFF139WTG.bam hg19 released low read length biological replicates with identical biosample ENCFF165JIN bam unfiltered alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHI, ENCFF807MUK 1815628785 ENCODE Processing Pipeline 8325165c4a98ad4bbde02832f1ec64ab https://www.encodeproject.org/files/ENCFF165JIN/@@download/ENCFF165JIN.bam hg19 released low read length biological replicates with identical biosample ENCFF218ESX bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHI, ENCFF807MUK 1093161462 ENCODE Processing Pipeline a4f1fb09469d85e744aeb32496f081e9 https://www.encodeproject.org/files/ENCFF218ESX/@@download/ENCFF218ESX.bam hg19 released low read length biological replicates with identical biosample ENCFF213NHC bigWig signal p-value ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF089EEX, ENCFF656HEF 614902850 ENCODE Processing Pipeline 29b66d00ac07dfa9e96dd6a4364ab175 https://www.encodeproject.org/files/ENCFF213NHC/@@download/ENCFF213NHC.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF256PQO bigWig signal p-value ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF842ISP 565345503 ENCODE Processing Pipeline 1eccff733eca1027bd66dfb2b75f5842 https://www.encodeproject.org/files/ENCFF256PQO/@@download/ENCFF256PQO.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF971LSF bigWig signal p-value ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF089EEX, ENCFF656HEF, ENCFF842ISP 848499175 ENCODE Processing Pipeline 9532a348db6340cadfd2ac81b6cbde61 https://www.encodeproject.org/files/ENCFF971LSF/@@download/ENCFF971LSF.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF043CDP bigWig fold change over control ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF089EEX, ENCFF656HEF, ENCFF842ISP 906781577 ENCODE Processing Pipeline d5b96c807c4d7a1a34280b016e69cc19 https://www.encodeproject.org/files/ENCFF043CDP/@@download/ENCFF043CDP.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF411VJF bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF089EEX, ENCFF656HEF 5975687 ENCODE Processing Pipeline 154c84b0d37ba434bc197a73af71b1bc https://www.encodeproject.org/files/ENCFF411VJF/@@download/ENCFF411VJF.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF473RTH bigBed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF531PJP 12908036 ENCODE Processing Pipeline c55f33cefd35fb6a952070292a544d6f https://www.encodeproject.org/files/ENCFF473RTH/@@download/ENCFF473RTH.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF240WIO bigBed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF464OLU 13054846 ENCODE Processing Pipeline 6b3900e1d6be3337ee74566e913caea6 https://www.encodeproject.org/files/ENCFF240WIO/@@download/ENCFF240WIO.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF823WEU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF582OZH 298171 ENCODE Processing Pipeline cf0cd899b5dc010f86b8b509fbca435f https://www.encodeproject.org/files/ENCFF823WEU/@@download/ENCFF823WEU.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF594GNP bigWig fold change over control ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF089EEX, ENCFF656HEF 579506584 ENCODE Processing Pipeline 5c28943a343d0a7f60f131bf9a9b0a2e https://www.encodeproject.org/files/ENCFF594GNP/@@download/ENCFF594GNP.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF582OZH bed narrowPeak conservative idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF411VJF, ENCFF419RSJ, ENCFF464OLU, ENCFF531PJP 131084 ENCODE Processing Pipeline 88fd6cdb1a9721c9cef0f1d04492b397 https://www.encodeproject.org/files/ENCFF582OZH/@@download/ENCFF582OZH.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF013FCN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF189NMX 329682 ENCODE Processing Pipeline 0b1491e36f5a4a9557e7b6e58d3533ae https://www.encodeproject.org/files/ENCFF013FCN/@@download/ENCFF013FCN.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF654HSR bigWig fold change over control ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF842ISP 549646739 ENCODE Processing Pipeline 7c4e213133dd8e9cdb792f5693623de4 https://www.encodeproject.org/files/ENCFF654HSR/@@download/ENCFF654HSR.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF464OLU bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF089EEX, ENCFF656HEF, ENCFF842ISP 6820309 ENCODE Processing Pipeline 39d7d284c153743cb0b25f58c582fcbc https://www.encodeproject.org/files/ENCFF464OLU/@@download/ENCFF464OLU.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF531PJP bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF842ISP 6429059 ENCODE Processing Pipeline 31f707adbea16498eb421de407d250cd https://www.encodeproject.org/files/ENCFF531PJP/@@download/ENCFF531PJP.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF764FVP bigBed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF411VJF 13217679 ENCODE Processing Pipeline 35440c9796777bea2a19f479d603ca43 https://www.encodeproject.org/files/ENCFF764FVP/@@download/ENCFF764FVP.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF189NMX bed narrowPeak optimal idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF411VJF, ENCFF419RSJ, ENCFF464OLU, ENCFF531PJP 149994 ENCODE Processing Pipeline 1814339a864f8b8758c575576e6d5258 https://www.encodeproject.org/files/ENCFF189NMX/@@download/ENCFF189NMX.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF474DPA bigWig fold change over control ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF218ESX, ENCFF864UEQ 580503345 ENCODE Processing Pipeline c4052442a9b4cf77f101cd88716d67b9 https://www.encodeproject.org/files/ENCFF474DPA/@@download/ENCFF474DPA.bigWig hg19 released low read length biological replicates with identical biosample ENCFF444LVR bigWig signal p-value ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF218ESX, ENCFF864UEQ 611099396 ENCODE Processing Pipeline a1fb358ed6542c589e8c5d4d6f64c15a https://www.encodeproject.org/files/ENCFF444LVR/@@download/ENCFF444LVR.bigWig hg19 released low read length biological replicates with identical biosample ENCFF721WFP bigWig signal p-value ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF139WTG, ENCFF864UEQ 632681777 ENCODE Processing Pipeline f7fbbe51a74a0897c509915f944d1962 https://www.encodeproject.org/files/ENCFF721WFP/@@download/ENCFF721WFP.bigWig hg19 released low read length biological replicates with identical biosample ENCFF557XZT bigWig signal p-value ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF139WTG, ENCFF218ESX, ENCFF864UEQ 844755871 ENCODE Processing Pipeline b415130c5d369115df9670ddbfc06d68 https://www.encodeproject.org/files/ENCFF557XZT/@@download/ENCFF557XZT.bigWig hg19 released low read length biological replicates with identical biosample ENCFF849OOP bigWig fold change over control ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF139WTG, ENCFF864UEQ 564604293 ENCODE Processing Pipeline fe52efc3294b5fe3f08ff47c48fc7852 https://www.encodeproject.org/files/ENCFF849OOP/@@download/ENCFF849OOP.bigWig hg19 released low read length biological replicates with identical biosample ENCFF026LZC bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF139WTG, ENCFF864UEQ 6440257 ENCODE Processing Pipeline 1c283cf8f6ecdc9a3724224810a85c2b https://www.encodeproject.org/files/ENCFF026LZC/@@download/ENCFF026LZC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF838ZHL bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF218ESX, ENCFF864UEQ 5980557 ENCODE Processing Pipeline a169d3a0d116ac4d0fc13d4112e1f1ce https://www.encodeproject.org/files/ENCFF838ZHL/@@download/ENCFF838ZHL.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF974EOM bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF139WTG, ENCFF218ESX, ENCFF864UEQ 6850994 ENCODE Processing Pipeline 369a28c885a7aa654bb9dc5fdc4fd81d https://www.encodeproject.org/files/ENCFF974EOM/@@download/ENCFF974EOM.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF743GLF bigWig fold change over control ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF139WTG, ENCFF218ESX, ENCFF864UEQ 908192816 ENCODE Processing Pipeline 5f60c96a11f4333bf3a15562a7074de6 https://www.encodeproject.org/files/ENCFF743GLF/@@download/ENCFF743GLF.bigWig hg19 released low read length biological replicates with identical biosample ENCFF691HEQ bigBed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF838ZHL 13217467 ENCODE Processing Pipeline d04afa43dbebb9a0ab96a879a3587ed9 https://www.encodeproject.org/files/ENCFF691HEQ/@@download/ENCFF691HEQ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF687VKF bigBed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF026LZC 12920298 ENCODE Processing Pipeline 736175cdd838594e806f9f060a091a14 https://www.encodeproject.org/files/ENCFF687VKF/@@download/ENCFF687VKF.bigBed hg19 released low read length biological replicates with identical biosample ENCFF538GXX bigBed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF974EOM 13059625 ENCODE Processing Pipeline 7a170a623f6e061db5beac7ee370d840 https://www.encodeproject.org/files/ENCFF538GXX/@@download/ENCFF538GXX.bigBed hg19 released low read length biological replicates with identical biosample ENCFF165AUR bed narrowPeak optimal idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF026LZC, ENCFF838ZHL, ENCFF974EOM 148829 ENCODE Processing Pipeline dcc0af113feb3c7e0cd87e3e67db6c1c https://www.encodeproject.org/files/ENCFF165AUR/@@download/ENCFF165AUR.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF895XWC bed narrowPeak conservative idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF026LZC, ENCFF838ZHL, ENCFF974EOM 131085 ENCODE Processing Pipeline 9c217872bf61a4eded49daaea4c11469 https://www.encodeproject.org/files/ENCFF895XWC/@@download/ENCFF895XWC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF287DDU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF895XWC 297679 ENCODE Processing Pipeline 995e01d57ae54fef5819a15a9a357f38 https://www.encodeproject.org/files/ENCFF287DDU/@@download/ENCFF287DDU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF913RWL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF165AUR 327117 ENCODE Processing Pipeline 489b2ca95b4836ac879c18611c4e2c55 https://www.encodeproject.org/files/ENCFF913RWL/@@download/ENCFF913RWL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000PCX bam alignments ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PDL 1373864737 Richard Myers, HAIB 2cd868acf32314c529e721dbf99e785f https://www.encodeproject.org/files/ENCFF000PCX/@@download/ENCFF000PCX.bam hg19 released biological replicates with identical biosample ENCFF000PCY bam alignments ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PDJ 1049314457 Richard Myers, HAIB f2fe4afbc42a8614deb0ab866c48bdf2 https://www.encodeproject.org/files/ENCFF000PCY/@@download/ENCFF000PCY.bam hg19 released biological replicates with identical biosample ENCFF000PCZ bigBed broadPeak peaks ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEQ 156448 Richard Myers, HAIB 61a9fe68435fa7bd558a6e68dd603cf2 https://www.encodeproject.org/files/ENCFF000PCZ/@@download/ENCFF000PCZ.bigBed hg19 released biological replicates with identical biosample ENCFF000PDA bigBed broadPeak peaks ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UER 225396 Richard Myers, HAIB 525abe704e1ed963086eff3c78e74483 https://www.encodeproject.org/files/ENCFF000PDA/@@download/ENCFF000PDA.bigBed hg19 released biological replicates with identical biosample ENCFF000PDB bigWig raw signal ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 147118485 Richard Myers, HAIB 91afa27e2de786bb52c01f06a29625c5 https://www.encodeproject.org/files/ENCFF000PDB/@@download/ENCFF000PDB.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PDD bigWig raw signal ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 116816597 Richard Myers, HAIB ac01c8c8c728a3585d4cfe14240b3b61 https://www.encodeproject.org/files/ENCFF000PDD/@@download/ENCFF000PDD.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PDJ fastq reads ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1077400579 Richard Myers, HAIB fd06ec7707e771eb0397862060d45d4f https://www.encodeproject.org/files/ENCFF000PDJ/@@download/ENCFF000PDJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF000PDL fastq reads ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1394253206 Richard Myers, HAIB 6469a51d751b3e44c52b3aba52ef6fb8 https://www.encodeproject.org/files/ENCFF000PDL/@@download/ENCFF000PDL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF001UEQ bed broadPeak peaks ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 67786 Richard Myers, HAIB db36b31f580443a96fec96bccd9bb84e https://www.encodeproject.org/files/ENCFF001UEQ/@@download/ENCFF001UEQ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UER bed broadPeak peaks ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 121770 Richard Myers, HAIB 5a8908371f2e366a54f11e0c0376783d https://www.encodeproject.org/files/ENCFF001UER/@@download/ENCFF001UER.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000OHW bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OIJ 376549986 Richard Myers, HAIB 759fef1440389064def536b84f508729 https://www.encodeproject.org/files/ENCFF000OHW/@@download/ENCFF000OHW.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000OHY bigBed broadPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZU 231358 Richard Myers, HAIB f82d4679a6fc54353404e422d7b7c35d https://www.encodeproject.org/files/ENCFF000OHY/@@download/ENCFF000OHY.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000OHZ bigBed broadPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZV 108427 Richard Myers, HAIB e24159735a0275a84b2aaf880c85e892 https://www.encodeproject.org/files/ENCFF000OHZ/@@download/ENCFF000OHZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000OIA bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OIM 202560196 Richard Myers, HAIB c76179abfecb80b6c33631547908224e https://www.encodeproject.org/files/ENCFF000OIA/@@download/ENCFF000OIA.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000OIC bigWig raw signal ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 7356591 Richard Myers, HAIB c88df834835b15bd59115fb90f06055f https://www.encodeproject.org/files/ENCFF000OIC/@@download/ENCFF000OIC.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF000OID bigWig raw signal ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 13020406 Richard Myers, HAIB 5bb17715242f80435cb2a5d5c4d27439 https://www.encodeproject.org/files/ENCFF000OID/@@download/ENCFF000OID.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF000OIJ fastq reads ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 724352268 Richard Myers, HAIB 7eac1c7c9acf7138d0d4b0cb38d662ce https://www.encodeproject.org/files/ENCFF000OIJ/@@download/ENCFF000OIJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJZ/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000OIM fastq reads ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 990958272 Richard Myers, HAIB 62d0d51a3e538b63379a1f67f0515ed3 https://www.encodeproject.org/files/ENCFF000OIM/@@download/ENCFF000OIM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJZ/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001TZU bed broadPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 119693 Richard Myers, HAIB c031c4d29def2fbedca8735420e7339e https://www.encodeproject.org/files/ENCFF001TZU/@@download/ENCFF001TZU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF001TZV bed broadPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 41490 Richard Myers, HAIB ce037658b50559f1f502754074346fb0 https://www.encodeproject.org/files/ENCFF001TZV/@@download/ENCFF001TZV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF002CIF bed narrowPeak optimal idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 63039 ENCODE Consortium Analysis Working Group 81219a9230097e295755a9b648cb2a5e https://www.encodeproject.org/files/ENCFF002CIF/@@download/ENCFF002CIF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF113QAX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIF 171094 ENCODE Consortium 2f9d243c0fe0ae2c3124495f86fd90e3 https://www.encodeproject.org/files/ENCFF113QAX/@@download/ENCFF113QAX.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF278ZMY bam unfiltered alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIJ, ENCFF643CGH 849108375 ENCODE Processing Pipeline 3e6279fe0b2a184b1225bb4484d456c1 https://www.encodeproject.org/files/ENCFF278ZMY/@@download/ENCFF278ZMY.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF771COC bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIJ, ENCFF643CGH 251330489 ENCODE Processing Pipeline d33026d7e2e43e62888470abf09ef743 https://www.encodeproject.org/files/ENCFF771COC/@@download/ENCFF771COC.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF863RJF bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIM, ENCFF643CGH 266438889 ENCODE Processing Pipeline e1b44ea59fc9f678375574ec44237cc3 https://www.encodeproject.org/files/ENCFF863RJF/@@download/ENCFF863RJF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF623NTF bam unfiltered alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIM, ENCFF643CGH 1133724378 ENCODE Processing Pipeline b95d3d470803835f9f5af258e7d857d4 https://www.encodeproject.org/files/ENCFF623NTF/@@download/ENCFF623NTF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF718PPU bam unfiltered alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIJ, ENCFF807MUK 858572980 ENCODE Processing Pipeline 80ebfc7e530b962fc19315d3e741e39e https://www.encodeproject.org/files/ENCFF718PPU/@@download/ENCFF718PPU.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF755PSY bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIJ, ENCFF807MUK 245544973 ENCODE Processing Pipeline b106ab2e8bdf12e0510b26dd7b924932 https://www.encodeproject.org/files/ENCFF755PSY/@@download/ENCFF755PSY.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF559NII bam unfiltered alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIM, ENCFF807MUK 1132892631 ENCODE Processing Pipeline 693c90813393bbfb29756a2c35499b01 https://www.encodeproject.org/files/ENCFF559NII/@@download/ENCFF559NII.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF903NFJ bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIM, ENCFF807MUK 263189702 ENCODE Processing Pipeline 99cb46c258c8b7cc47c82cab6f82fd73 https://www.encodeproject.org/files/ENCFF903NFJ/@@download/ENCFF903NFJ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF043UUT bigWig signal p-value ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562XPJ, ENCFF771COC 340183163 ENCODE Processing Pipeline f18d36dc2f18e97180fd850f2df4dfa1 https://www.encodeproject.org/files/ENCFF043UUT/@@download/ENCFF043UUT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF788TXW bigWig signal p-value ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562XPJ, ENCFF863RJF 311278411 ENCODE Processing Pipeline 42e37f96af0ae816d11772077b73127f https://www.encodeproject.org/files/ENCFF788TXW/@@download/ENCFF788TXW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF011VAM bigWig signal p-value ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF562XPJ, ENCFF771COC, ENCFF863RJF 376237746 ENCODE Processing Pipeline 2ee22a691101526fcc297bd5676d8255 https://www.encodeproject.org/files/ENCFF011VAM/@@download/ENCFF011VAM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF008DYO bigWig fold change over control ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562XPJ, ENCFF771COC 149044045 ENCODE Processing Pipeline 6eca77c0d26ca2be6596219e7bae62ee https://www.encodeproject.org/files/ENCFF008DYO/@@download/ENCFF008DYO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF203IGS bigWig fold change over control ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562XPJ, ENCFF863RJF 152657648 ENCODE Processing Pipeline 6d69d63115ac1b8b671eb799d57afe98 https://www.encodeproject.org/files/ENCFF203IGS/@@download/ENCFF203IGS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF723BZQ bigWig fold change over control ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF562XPJ, ENCFF771COC, ENCFF863RJF 273484959 ENCODE Processing Pipeline 950dbece8cf030a6da0691583a6bd3bc https://www.encodeproject.org/files/ENCFF723BZQ/@@download/ENCFF723BZQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF532GVA bigBed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF859TST 6034921 ENCODE Processing Pipeline 0dc9a2b4ea913d0cdb1996e6b7e866b8 https://www.encodeproject.org/files/ENCFF532GVA/@@download/ENCFF532GVA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF127HCN bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562XPJ, ENCFF771COC 2916800 ENCODE Processing Pipeline d7e2b2c75ed5051110949512dfc79e38 https://www.encodeproject.org/files/ENCFF127HCN/@@download/ENCFF127HCN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF401UGK bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF562XPJ, ENCFF771COC, ENCFF863RJF 4244782 ENCODE Processing Pipeline 8cc071c425c9902236a11d210573759b https://www.encodeproject.org/files/ENCFF401UGK/@@download/ENCFF401UGK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF859TST bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF562XPJ, ENCFF863RJF 2868227 ENCODE Processing Pipeline 0916a87821e2021e0bd5f9ed7bfb1b76 https://www.encodeproject.org/files/ENCFF859TST/@@download/ENCFF859TST.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF411VBQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF315MWD 223995 ENCODE Processing Pipeline 0bfd9a75408c5774136ec01c1270a48d https://www.encodeproject.org/files/ENCFF411VBQ/@@download/ENCFF411VBQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF290AFK bigBed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF127HCN 6133979 ENCODE Processing Pipeline 0e7cbe53f9e58b3fee707b74d8022c8b https://www.encodeproject.org/files/ENCFF290AFK/@@download/ENCFF290AFK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF571XZE bigBed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401UGK 10233259 ENCODE Processing Pipeline 54aecd5d81d93c0b5debc540cfee0de0 https://www.encodeproject.org/files/ENCFF571XZE/@@download/ENCFF571XZE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF987CQF bed narrowPeak optimal idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF127HCN, ENCFF401UGK, ENCFF419RSJ, ENCFF859TST 114158 ENCODE Processing Pipeline 8cb1d9dbc3ce6691f49ecb9bb2e404fb https://www.encodeproject.org/files/ENCFF987CQF/@@download/ENCFF987CQF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF162KVF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF987CQF 240560 ENCODE Processing Pipeline 8062cbdde1f82afbb693675efb89f77c https://www.encodeproject.org/files/ENCFF162KVF/@@download/ENCFF162KVF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF315MWD bed narrowPeak conservative idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF127HCN, ENCFF401UGK, ENCFF419RSJ, ENCFF859TST 102064 ENCODE Processing Pipeline 1f5f74b25b996d9e23d2b178a7a30038 https://www.encodeproject.org/files/ENCFF315MWD/@@download/ENCFF315MWD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF936IPH bigWig signal p-value ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF755PSY 372000444 ENCODE Processing Pipeline 495e95d0d57f363847d20114fdec007f https://www.encodeproject.org/files/ENCFF936IPH/@@download/ENCFF936IPH.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF274GOV bigWig signal p-value ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF903NFJ 319023887 ENCODE Processing Pipeline de2f369a54a9ab257957508e54998aec https://www.encodeproject.org/files/ENCFF274GOV/@@download/ENCFF274GOV.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF076PSF bigWig fold change over control ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF903NFJ 150478303 ENCODE Processing Pipeline 83a1b507dceb440928dc6fc4ddd7986d https://www.encodeproject.org/files/ENCFF076PSF/@@download/ENCFF076PSF.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF402CFV bigWig fold change over control ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF755PSY 149956248 ENCODE Processing Pipeline 66540b6f2bb1fd3d8b10a68314994544 https://www.encodeproject.org/files/ENCFF402CFV/@@download/ENCFF402CFV.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF037GPT bigWig signal p-value ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376UIU, ENCFF755PSY, ENCFF903NFJ 391108260 ENCODE Processing Pipeline d79328d0ebc917847b77b6e30a5a6acf https://www.encodeproject.org/files/ENCFF037GPT/@@download/ENCFF037GPT.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF700FAA bigWig fold change over control ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376UIU, ENCFF755PSY, ENCFF903NFJ 275740794 ENCODE Processing Pipeline c8151350c1205cfb148ff4da0085ed00 https://www.encodeproject.org/files/ENCFF700FAA/@@download/ENCFF700FAA.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF801IRZ bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF376UIU, ENCFF755PSY, ENCFF903NFJ 4338615 ENCODE Processing Pipeline 60d88f15cca1a89ab2709c1245b56438 https://www.encodeproject.org/files/ENCFF801IRZ/@@download/ENCFF801IRZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF385UJM bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF903NFJ 2968239 ENCODE Processing Pipeline be71180a21f77eb94e558d5b4a7d91cc https://www.encodeproject.org/files/ENCFF385UJM/@@download/ENCFF385UJM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF387UXA bigBed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF801IRZ 10354968 ENCODE Processing Pipeline dfda6ea8caad178c7e29af898bd9585b https://www.encodeproject.org/files/ENCFF387UXA/@@download/ENCFF387UXA.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF831OQU bed narrowPeak conservative idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF385UJM, ENCFF493TPH, ENCFF801IRZ 94523 ENCODE Processing Pipeline edc5460ac5ad514fdb795fddb82ffc6a https://www.encodeproject.org/files/ENCFF831OQU/@@download/ENCFF831OQU.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF057DDX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF831OQU 215916 ENCODE Processing Pipeline e8070deddae09da2d6e7d54c98397098 https://www.encodeproject.org/files/ENCFF057DDX/@@download/ENCFF057DDX.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF067QUU bed narrowPeak optimal idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF385UJM, ENCFF493TPH, ENCFF801IRZ 113118 ENCODE Processing Pipeline 5dad41b367e9fb1f040fcd4a384e1dd0 https://www.encodeproject.org/files/ENCFF067QUU/@@download/ENCFF067QUU.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF493TPH bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF755PSY 2982299 ENCODE Processing Pipeline c7574401499458a16387560a781d573c https://www.encodeproject.org/files/ENCFF493TPH/@@download/ENCFF493TPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF075ZCT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067QUU 241200 ENCODE Processing Pipeline 68d5a6d6bff5bc57d6551b4d9d1626cb https://www.encodeproject.org/files/ENCFF075ZCT/@@download/ENCFF075ZCT.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF940HJK bigBed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF493TPH 6290930 ENCODE Processing Pipeline aaf20cbea75f6c1467b38f84766350b1 https://www.encodeproject.org/files/ENCFF940HJK/@@download/ENCFF940HJK.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF821NYG bigBed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF385UJM 6277150 ENCODE Processing Pipeline 7e075b18911a2c21e1943a88016205a9 https://www.encodeproject.org/files/ENCFF821NYG/@@download/ENCFF821NYG.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001HTS bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUG 913672057 John Stamatoyannopoulos, UW 4fa5a37f36f4757896af9c013606c892 https://www.encodeproject.org/files/ENCFF001HTS/@@download/ENCFF001HTS.bam hg19 archived low read length, low read depth ENCFF001HTU bigBed broadPeak hotspots ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XSV 5878698 John Stamatoyannopoulos, UW 794ad0bab739686ad7c63e9e5d824542 https://www.encodeproject.org/files/ENCFF001HTU/@@download/ENCFF001HTU.bigBed hg19 archived low read length, low read depth ENCFF001HTV bigBed broadPeak hotspots ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XSX 5437291 John Stamatoyannopoulos, UW ed31cc558f7a6ecab62721d5931090c3 https://www.encodeproject.org/files/ENCFF001HTV/@@download/ENCFF001HTV.bigBed hg19 archived low read length, low read depth ENCFF001HTW bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XSW 1687714 John Stamatoyannopoulos, UW 7aa649fed50220f2f729ec62e4bfe66d https://www.encodeproject.org/files/ENCFF001HTW/@@download/ENCFF001HTW.bigBed hg19 archived low read length, low read depth ENCFF001HTX bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUF 874725190 John Stamatoyannopoulos, UW f6aa2fc193492e6b761c2c0e1475a1dc https://www.encodeproject.org/files/ENCFF001HTX/@@download/ENCFF001HTX.bam hg19 archived low read length, low read depth ENCFF001HTY bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XSY 1151523 John Stamatoyannopoulos, UW 0a941c6cf4f7dd676d213cd229df214d https://www.encodeproject.org/files/ENCFF001HTY/@@download/ENCFF001HTY.bigBed hg19 archived low read length, low read depth ENCFF001HTZ bigWig raw signal ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HTS 151195342 John Stamatoyannopoulos, UW e0c5d4d6a8b7a01f6fcf7ada7ca0a16c https://www.encodeproject.org/files/ENCFF001HTZ/@@download/ENCFF001HTZ.bigWig hg19 archived low read length, low read depth ENCFF001HUA bigWig raw signal ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HTX 158144969 John Stamatoyannopoulos, UW efe3ce618c5d4f0fe3fd73a6eca6f1be https://www.encodeproject.org/files/ENCFF001HUA/@@download/ENCFF001HUA.bigWig hg19 archived low read length, low read depth ENCFF001HUF fastq reads ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 1153632802 John Stamatoyannopoulos, UW dfa2ddb3cc2522a2aac997a20ef28397 https://www.encodeproject.org/files/ENCFF001HUF/@@download/ENCFF001HUF.fastq.gz Illumina Genome Analyzer /files/ENCFF001HUM/ released low read length, low read depth ENCFF001HUG fastq reads ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 1066847160 John Stamatoyannopoulos, UW b4dfecf2586a1eadb68be7fecbc499f3 https://www.encodeproject.org/files/ENCFF001HUG/@@download/ENCFF001HUG.fastq.gz Illumina Genome Analyzer /files/ENCFF001HUM/ released low read length, low read depth ENCFF001XSV bed broadPeak hotspots ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HTS 3517906 John Stamatoyannopoulos, UW 1fc754fe9caad9eec482bf652d977f2a https://www.encodeproject.org/files/ENCFF001XSV/@@download/ENCFF001XSV.bed.gz hg19 archived low read length, low read depth ENCFF001XSW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HTS 1013925 John Stamatoyannopoulos, UW f2e1890897b03a2fd59a60948dbba044 https://www.encodeproject.org/files/ENCFF001XSW/@@download/ENCFF001XSW.bed.gz hg19 archived low read length, low read depth ENCFF001XSX bed broadPeak hotspots ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HTX 3107271 John Stamatoyannopoulos, UW 6e78911d9912368701c997c05d7d7d62 https://www.encodeproject.org/files/ENCFF001XSX/@@download/ENCFF001XSX.bed.gz hg19 archived low read length, low read depth ENCFF001XSY bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HTX 827324 John Stamatoyannopoulos, UW 64a8c89348e3f69b4c3a9fc36cb0da51 https://www.encodeproject.org/files/ENCFF001XSY/@@download/ENCFF001XSY.bed.gz hg19 archived low read length, low read depth ENCFF002DDK bed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HTS, ENCFF001HTX 1232023 ENCODE Consortium Analysis Working Group 8a958f1902ed72574b7f49af0d9af347 https://www.encodeproject.org/files/ENCFF002DDK/@@download/ENCFF002DDK.bed.gz hg19 archived low read length, low read depth ENCFF746GDY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DDK 2493147 ENCODE Consortium 2e62ce35420723048bce461009b19b25 https://www.encodeproject.org/files/ENCFF746GDY/@@download/ENCFF746GDY.bigBed hg19 archived low read length, low read depth ENCFF307AYT bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HUF, ENCFF807MUK 772486466 ENCODE Processing Pipeline 009ee90d716a948de825b2b3738cef35 https://www.encodeproject.org/files/ENCFF307AYT/@@download/ENCFF307AYT.bam hg19 released low read length, low read depth ENCFF471KPU bam unfiltered alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HUF, ENCFF807MUK 1271806075 ENCODE Processing Pipeline c9a0bc60d916f3d6ef1f063acac12dc8 https://www.encodeproject.org/files/ENCFF471KPU/@@download/ENCFF471KPU.bam hg19 released low read length, low read depth ENCFF860VSM bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUG, ENCFF807MUK 794941615 ENCODE Processing Pipeline 5834e143ed1a95136fb7650048e6a5f4 https://www.encodeproject.org/files/ENCFF860VSM/@@download/ENCFF860VSM.bam hg19 released low read length, low read depth ENCFF756PBJ bam unfiltered alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUG, ENCFF807MUK 1200038882 ENCODE Processing Pipeline fb8075d3e24f05666d3331c7b2386279 https://www.encodeproject.org/files/ENCFF756PBJ/@@download/ENCFF756PBJ.bam hg19 released low read length, low read depth ENCFF803LMD bam unfiltered alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HUF, ENCFF643CGH 1275859242 ENCODE Processing Pipeline f7778cf113d577cbfb5ccd8bd01f7992 https://www.encodeproject.org/files/ENCFF803LMD/@@download/ENCFF803LMD.bam GRCh38 released low read length, low read depth ENCFF822LTQ bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HUF, ENCFF643CGH 771932619 ENCODE Processing Pipeline 08921cc60642df9e2f3592e374feb893 https://www.encodeproject.org/files/ENCFF822LTQ/@@download/ENCFF822LTQ.bam GRCh38 released low read length, low read depth ENCFF608PJC bam unfiltered alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUG, ENCFF643CGH 1204461821 ENCODE Processing Pipeline b95f624bde415b620e41a19fa2fe720c https://www.encodeproject.org/files/ENCFF608PJC/@@download/ENCFF608PJC.bam GRCh38 released low read length, low read depth ENCFF274JRZ bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUG, ENCFF643CGH 794353001 ENCODE Processing Pipeline 5895db5da1db6d10a956fa76fa43e6c1 https://www.encodeproject.org/files/ENCFF274JRZ/@@download/ENCFF274JRZ.bam GRCh38 released low read length, low read depth ENCFF130SGS bigWig signal p-value ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF307AYT, ENCFF340AIJ, ENCFF860VSM 545156277 ENCODE Processing Pipeline dc9efbb4ab6fc2035383980f9c5490b5 https://www.encodeproject.org/files/ENCFF130SGS/@@download/ENCFF130SGS.bigWig hg19 released low read length, low read depth ENCFF557GKX bigWig signal p-value ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF274JRZ, ENCFF320ZWB, ENCFF822LTQ 544674920 ENCODE Processing Pipeline 71629a57ee8949fd8e98db84e8b88436 https://www.encodeproject.org/files/ENCFF557GKX/@@download/ENCFF557GKX.bigWig GRCh38 released low read length, low read depth ENCFF807XJE bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF684VRG 10864956 ENCODE Processing Pipeline 38d1ee24b84e849a96865cc74052437a https://www.encodeproject.org/files/ENCFF807XJE/@@download/ENCFF807XJE.bigBed GRCh38 released low read length, low read depth ENCFF867BUQ bed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF446GJI, ENCFF610MJM, ENCFF684VRG 997469 ENCODE Processing Pipeline 50416f14bb8ac774b2e0c63019c3c56d https://www.encodeproject.org/files/ENCFF867BUQ/@@download/ENCFF867BUQ.bed.gz GRCh38 released low read length, low read depth ENCFF645FWE bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF340AIJ, ENCFF860VSM 4848814 ENCODE Processing Pipeline c0f9e12349771232e46952409185fd6a https://www.encodeproject.org/files/ENCFF645FWE/@@download/ENCFF645FWE.bed.gz hg19 released low read length, low read depth ENCFF051RIN bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF307AYT, ENCFF340AIJ, ENCFF860VSM 5257505 ENCODE Processing Pipeline b40abbc8c1c047a2ca5462cdb5fce326 https://www.encodeproject.org/files/ENCFF051RIN/@@download/ENCFF051RIN.bed.gz hg19 released low read length, low read depth ENCFF636PTN bigWig signal p-value ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF307AYT, ENCFF340AIJ 412376295 ENCODE Processing Pipeline 0f2555047bd8ec9529c8f66a304c72af https://www.encodeproject.org/files/ENCFF636PTN/@@download/ENCFF636PTN.bigWig hg19 released low read length, low read depth ENCFF721LHL bigWig signal p-value ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF320ZWB, ENCFF822LTQ 383590690 ENCODE Processing Pipeline 3d2158985e504ffb70f02dec62c82e46 https://www.encodeproject.org/files/ENCFF721LHL/@@download/ENCFF721LHL.bigWig GRCh38 released low read length, low read depth ENCFF466IXA bigWig fold change over control ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF274JRZ, ENCFF320ZWB 358584326 ENCODE Processing Pipeline 1655fed8e0cdc20db3e7273c158f7019 https://www.encodeproject.org/files/ENCFF466IXA/@@download/ENCFF466IXA.bigWig GRCh38 released low read length, low read depth ENCFF323YAX bigWig signal p-value ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF340AIJ, ENCFF860VSM 440415054 ENCODE Processing Pipeline 3fa2daee6705b492bc7652fd385c6905 https://www.encodeproject.org/files/ENCFF323YAX/@@download/ENCFF323YAX.bigWig hg19 released low read length, low read depth ENCFF744NRO bigWig fold change over control ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF340AIJ, ENCFF860VSM 358710456 ENCODE Processing Pipeline 4ce2a3399d57983c6771e8bc039b3dff https://www.encodeproject.org/files/ENCFF744NRO/@@download/ENCFF744NRO.bigWig hg19 released low read length, low read depth ENCFF058JSU bigWig fold change over control ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF307AYT, ENCFF340AIJ 368781698 ENCODE Processing Pipeline 4b949c01143991ae1ef1ad2cc8a03f64 https://www.encodeproject.org/files/ENCFF058JSU/@@download/ENCFF058JSU.bigWig hg19 released low read length, low read depth ENCFF853UBZ bigWig fold change over control ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF307AYT, ENCFF340AIJ, ENCFF860VSM 609011753 ENCODE Processing Pipeline 7f9490e6ae5fee15215dcf74813dacac https://www.encodeproject.org/files/ENCFF853UBZ/@@download/ENCFF853UBZ.bigWig hg19 released low read length, low read depth ENCFF095BZW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF307AYT, ENCFF340AIJ 4567243 ENCODE Processing Pipeline c79f4c4f32756d7ed9fc5ebc6ba00009 https://www.encodeproject.org/files/ENCFF095BZW/@@download/ENCFF095BZW.bed.gz hg19 released low read length, low read depth ENCFF693ZBL bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF645FWE 11146049 ENCODE Processing Pipeline e2f4ea394cf0d499e5ed1dab4df2936a https://www.encodeproject.org/files/ENCFF693ZBL/@@download/ENCFF693ZBL.bigBed hg19 released low read length, low read depth ENCFF664JOJ bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF095BZW 10861539 ENCODE Processing Pipeline aaf6f52d30921542f22cf77885777391 https://www.encodeproject.org/files/ENCFF664JOJ/@@download/ENCFF664JOJ.bigBed hg19 released low read length, low read depth ENCFF590GER bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF051RIN 11546915 ENCODE Processing Pipeline 2b2e95ec01b2e76b71906f73bdc5b436 https://www.encodeproject.org/files/ENCFF590GER/@@download/ENCFF590GER.bigBed hg19 released low read length, low read depth ENCFF720OXG bed narrowPeak conservative idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF051RIN, ENCFF095BZW, ENCFF645FWE 955285 ENCODE Processing Pipeline 6b8d089895eaec7731ed6a1685465236 https://www.encodeproject.org/files/ENCFF720OXG/@@download/ENCFF720OXG.bed.gz hg19 released low read length, low read depth ENCFF932MLS bigBed narrowPeak conservative idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF720OXG 1648041 ENCODE Processing Pipeline 1e493480df4d969b724a5a1b058aad6e https://www.encodeproject.org/files/ENCFF932MLS/@@download/ENCFF932MLS.bigBed hg19 released low read length, low read depth ENCFF136KNK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF414FWV 1704132 ENCODE Processing Pipeline eecf6faa1b03ed6554a8b0338c976460 https://www.encodeproject.org/files/ENCFF136KNK/@@download/ENCFF136KNK.bigBed hg19 released low read length, low read depth ENCFF551DQV bigWig fold change over control ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF274JRZ, ENCFF320ZWB, ENCFF822LTQ 604140269 ENCODE Processing Pipeline 930a9ac6c2e433ff3e661c28fbabe31d https://www.encodeproject.org/files/ENCFF551DQV/@@download/ENCFF551DQV.bigWig GRCh38 released low read length, low read depth ENCFF088JWU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF867BUQ 1704295 ENCODE Processing Pipeline 2a11d3206ccc907ad57b648cb073e2f1 https://www.encodeproject.org/files/ENCFF088JWU/@@download/ENCFF088JWU.bigBed GRCh38 released low read length, low read depth ENCFF414FWV bed narrowPeak optimal idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF051RIN, ENCFF095BZW, ENCFF645FWE 998849 ENCODE Processing Pipeline d10b4180a11b1153c93ac953d9ea5b6e https://www.encodeproject.org/files/ENCFF414FWV/@@download/ENCFF414FWV.bed.gz hg19 released low read length, low read depth ENCFF733JWZ bigWig signal p-value ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF274JRZ, ENCFF320ZWB 441135375 ENCODE Processing Pipeline fe76151995f06485b8be9524ab9938f6 https://www.encodeproject.org/files/ENCFF733JWZ/@@download/ENCFF733JWZ.bigWig GRCh38 released low read length, low read depth ENCFF208JZM bigWig fold change over control ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF320ZWB, ENCFF822LTQ 365736444 ENCODE Processing Pipeline 79ce45287a24530683346dbdccd3221c https://www.encodeproject.org/files/ENCFF208JZM/@@download/ENCFF208JZM.bigWig GRCh38 released low read length, low read depth ENCFF684VRG bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF320ZWB, ENCFF822LTQ 4565392 ENCODE Processing Pipeline c2b4a3dfe9baa8da7d9cab5b65032f2a https://www.encodeproject.org/files/ENCFF684VRG/@@download/ENCFF684VRG.bed.gz GRCh38 released low read length, low read depth ENCFF446GJI bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF274JRZ, ENCFF320ZWB, ENCFF822LTQ 5254785 ENCODE Processing Pipeline c2fe148f98f7e46b8d85343499a8b8d4 https://www.encodeproject.org/files/ENCFF446GJI/@@download/ENCFF446GJI.bed.gz GRCh38 released low read length, low read depth ENCFF448DYL bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF610MJM 11161615 ENCODE Processing Pipeline b3095f6f2bd3f39af2909e78b10d19e3 https://www.encodeproject.org/files/ENCFF448DYL/@@download/ENCFF448DYL.bigBed GRCh38 released low read length, low read depth ENCFF823LRG bigBed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF446GJI 11549265 ENCODE Processing Pipeline 53f1972e648893464faf4c63c270fa48 https://www.encodeproject.org/files/ENCFF823LRG/@@download/ENCFF823LRG.bigBed GRCh38 released low read length, low read depth ENCFF610MJM bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF274JRZ, ENCFF320ZWB 4847266 ENCODE Processing Pipeline 1a48eed5f657c1815d2c04a361b7df2f https://www.encodeproject.org/files/ENCFF610MJM/@@download/ENCFF610MJM.bed.gz GRCh38 released low read length, low read depth ENCFF071JZI bed narrowPeak conservative idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF446GJI, ENCFF610MJM, ENCFF684VRG 955650 ENCODE Processing Pipeline 1f4687846af7a37a00172152fc5b3bd9 https://www.encodeproject.org/files/ENCFF071JZI/@@download/ENCFF071JZI.bed.gz GRCh38 released low read length, low read depth ENCFF893PPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF071JZI 1649289 ENCODE Processing Pipeline 92b67dd5edcbc00644b97b255517c010 https://www.encodeproject.org/files/ENCFF893PPV/@@download/ENCFF893PPV.bigBed GRCh38 released low read length, low read depth ENCFF000NKL bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NKT 754336985 Richard Myers, HAIB 4650a98e92892303541971a205fbe3c0 https://www.encodeproject.org/files/ENCFF000NKL/@@download/ENCFF000NKL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NKM bigBed broadPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TUL 440461 Richard Myers, HAIB b018ab74f13d634fbe304f5c8d2952a3 https://www.encodeproject.org/files/ENCFF000NKM/@@download/ENCFF000NKM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NKN bigBed broadPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TUM 379769 Richard Myers, HAIB d5407d06bed618170ad287a71918dbf0 https://www.encodeproject.org/files/ENCFF000NKN/@@download/ENCFF000NKN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NKO bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NKZ 1298449777 Richard Myers, HAIB 709610a0f44e72d643107342b039273a https://www.encodeproject.org/files/ENCFF000NKO/@@download/ENCFF000NKO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NKR bigWig raw signal ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 10245078 Richard Myers, HAIB b45d8b21ecfcf4a3e340ca9db416492e https://www.encodeproject.org/files/ENCFF000NKR/@@download/ENCFF000NKR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NKS bigWig raw signal ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 10705026 Richard Myers, HAIB 8892c6d1f461d34a78f959044bf4cb5e https://www.encodeproject.org/files/ENCFF000NKS/@@download/ENCFF000NKS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000NKT fastq reads ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 645596072 Richard Myers, HAIB 51f92cb075ecf736e9da6d8627228ef0 https://www.encodeproject.org/files/ENCFF000NKT/@@download/ENCFF000NKT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NKZ fastq reads ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1208509841 Richard Myers, HAIB 7250d4d3bfa6750f086f79b3e7443337 https://www.encodeproject.org/files/ENCFF000NKZ/@@download/ENCFF000NKZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NPN/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001TUL bed broadPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 1 281878 Richard Myers, HAIB 681fab358b6e86bbec26ace0da32e170 https://www.encodeproject.org/files/ENCFF001TUL/@@download/ENCFF001TUL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001TUM bed broadPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 1 220780 Richard Myers, HAIB af519353c3883887e096f250b125e2d5 https://www.encodeproject.org/files/ENCFF001TUM/@@download/ENCFF001TUM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CGH bed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 503330 ENCODE Consortium Analysis Working Group dada712ff792fceffd9d90d3fe249d2d https://www.encodeproject.org/files/ENCFF002CGH/@@download/ENCFF002CGH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF833ZKR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CGH 901034 ENCODE Consortium 992e12e9cb03aa9a083e12a079031ff9 https://www.encodeproject.org/files/ENCFF833ZKR/@@download/ENCFF833ZKR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF455SUD bam unfiltered alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKT, ENCFF807MUK 886882725 ENCODE Processing Pipeline cd31daaa34e25e45476f39077f236000 https://www.encodeproject.org/files/ENCFF455SUD/@@download/ENCFF455SUD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF477SJG bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKT, ENCFF807MUK 528449795 ENCODE Processing Pipeline 16495cf20d8aa82fc8cfb7f868e3fef3 https://www.encodeproject.org/files/ENCFF477SJG/@@download/ENCFF477SJG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF467HPD bam unfiltered alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKZ, ENCFF807MUK 1597376749 ENCODE Processing Pipeline 191d2aaf02afc702f20b84dfa8f7e81f https://www.encodeproject.org/files/ENCFF467HPD/@@download/ENCFF467HPD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF100KVY bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKZ, ENCFF807MUK 979848155 ENCODE Processing Pipeline eecf8ee46c3c1974e8bb4a9749fe9369 https://www.encodeproject.org/files/ENCFF100KVY/@@download/ENCFF100KVY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF913BRO bam unfiltered alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKT, ENCFF643CGH 890738884 ENCODE Processing Pipeline 37cca749a704728bffafc22237afd8eb https://www.encodeproject.org/files/ENCFF913BRO/@@download/ENCFF913BRO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF061THL bam unfiltered alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKZ, ENCFF643CGH 1604019003 ENCODE Processing Pipeline 30ffc1b1a2a7482483aa3e7fd0ec555d https://www.encodeproject.org/files/ENCFF061THL/@@download/ENCFF061THL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF663MFK bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKT, ENCFF643CGH 528175062 ENCODE Processing Pipeline 77b8bd3881ed7867e8990fc48dd923c4 https://www.encodeproject.org/files/ENCFF663MFK/@@download/ENCFF663MFK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF667IDX bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKZ, ENCFF643CGH 979486542 ENCODE Processing Pipeline f8b0c94406051ed74ee01362c158d54b https://www.encodeproject.org/files/ENCFF667IDX/@@download/ENCFF667IDX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF929LLW bigWig signal p-value ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100KVY, ENCFF279XQE, ENCFF477SJG 656532898 ENCODE Processing Pipeline 497bff02a0330b07ac576727c2d93c4f https://www.encodeproject.org/files/ENCFF929LLW/@@download/ENCFF929LLW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF598COF bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF100KVY, ENCFF279XQE 4158761 ENCODE Processing Pipeline 988c853ef62ae5c1b99a14b507211924 https://www.encodeproject.org/files/ENCFF598COF/@@download/ENCFF598COF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF305MUT bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100KVY, ENCFF279XQE, ENCFF477SJG 4572004 ENCODE Processing Pipeline 450792fc7595632f33bf0883e7576e5f https://www.encodeproject.org/files/ENCFF305MUT/@@download/ENCFF305MUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF102VPC bigWig signal p-value ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF279XQE, ENCFF477SJG 487946043 ENCODE Processing Pipeline d8ded3f47e922f95d5e83be79f5e7160 https://www.encodeproject.org/files/ENCFF102VPC/@@download/ENCFF102VPC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF717RFU bigWig signal p-value ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF100KVY, ENCFF279XQE 630673707 ENCODE Processing Pipeline 691da48e347b00d9c49a4737de2d3bd3 https://www.encodeproject.org/files/ENCFF717RFU/@@download/ENCFF717RFU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF101WYX bigWig fold change over control ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF279XQE, ENCFF477SJG 314804545 ENCODE Processing Pipeline 3b4b606f1a54c152b3b3045994b3d4ae https://www.encodeproject.org/files/ENCFF101WYX/@@download/ENCFF101WYX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF152XNT bigWig fold change over control ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF100KVY, ENCFF279XQE 475211265 ENCODE Processing Pipeline b4aaf8ff9232c6ffae083122fa19b692 https://www.encodeproject.org/files/ENCFF152XNT/@@download/ENCFF152XNT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF542MFI bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF279XQE, ENCFF477SJG 4000778 ENCODE Processing Pipeline d6e6bfd129d3f8acce8ab9083367880e https://www.encodeproject.org/files/ENCFF542MFI/@@download/ENCFF542MFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF498CHL bigWig fold change over control ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF100KVY, ENCFF279XQE, ENCFF477SJG 680146955 ENCODE Processing Pipeline ba0b80bb9a28659ff628591fa707faf4 https://www.encodeproject.org/files/ENCFF498CHL/@@download/ENCFF498CHL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF380ESL bigBed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF598COF 10914782 ENCODE Processing Pipeline 8dc80269a2a860d15f9a3bd3c40f2877 https://www.encodeproject.org/files/ENCFF380ESL/@@download/ENCFF380ESL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF753SIW bigBed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF305MUT 11267110 ENCODE Processing Pipeline 4b46a6f9f6222b85052426bfe43f37d7 https://www.encodeproject.org/files/ENCFF753SIW/@@download/ENCFF753SIW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF296XCF bed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF305MUT, ENCFF542MFI, ENCFF598COF 383004 ENCODE Processing Pipeline c426eb3fba59c258c551f1b9197e8079 https://www.encodeproject.org/files/ENCFF296XCF/@@download/ENCFF296XCF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF297FDK bed narrowPeak conservative idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF305MUT, ENCFF542MFI, ENCFF598COF 375692 ENCODE Processing Pipeline 8a1a7e9f7d68905a1d24878c6f6f1110 https://www.encodeproject.org/files/ENCFF297FDK/@@download/ENCFF297FDK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF269BZX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF297FDK 594682 ENCODE Processing Pipeline 8372c6c63c094840cfd759f8ea882a97 https://www.encodeproject.org/files/ENCFF269BZX/@@download/ENCFF269BZX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF168WOX bigBed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF542MFI 8531056 ENCODE Processing Pipeline 9572e1ebffe6aa92775fdfa92a7ba7da https://www.encodeproject.org/files/ENCFF168WOX/@@download/ENCFF168WOX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF601ODU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF296XCF 603120 ENCODE Processing Pipeline a4788c3f1d16f3e1043c445e941f81e7 https://www.encodeproject.org/files/ENCFF601ODU/@@download/ENCFF601ODU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF992ZMC bigWig fold change over control ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF016HFH, ENCFF663MFK, ENCFF667IDX 676096666 ENCODE Processing Pipeline e23be1c76f8c2f7543a2c30397ada2e9 https://www.encodeproject.org/files/ENCFF992ZMC/@@download/ENCFF992ZMC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF714BUH bigBed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF229TMK 10915586 ENCODE Processing Pipeline 9ddfc61b61cbc8354cc2dfc74a485b72 https://www.encodeproject.org/files/ENCFF714BUH/@@download/ENCFF714BUH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF229TMK bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF016HFH, ENCFF667IDX 4152869 ENCODE Processing Pipeline ae649a9d6d59241f213890eeb7b51664 https://www.encodeproject.org/files/ENCFF229TMK/@@download/ENCFF229TMK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF772DAQ bigWig fold change over control ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF016HFH, ENCFF667IDX 465652197 ENCODE Processing Pipeline 18a86a9f138abd69db42cd640bcc9681 https://www.encodeproject.org/files/ENCFF772DAQ/@@download/ENCFF772DAQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF718PVF bigBed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF379DAN 11259116 ENCODE Processing Pipeline 9066f16f2d8e443dbacd9b8ea1e0c56b https://www.encodeproject.org/files/ENCFF718PVF/@@download/ENCFF718PVF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF834ZLG bigWig signal p-value ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF016HFH, ENCFF667IDX 529338119 ENCODE Processing Pipeline c43fb61851083786032cf5d573e0788b https://www.encodeproject.org/files/ENCFF834ZLG/@@download/ENCFF834ZLG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF225DGN bigWig fold change over control ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF016HFH, ENCFF663MFK 315667734 ENCODE Processing Pipeline babacc8986b38ec2e243735e0f7a441c https://www.encodeproject.org/files/ENCFF225DGN/@@download/ENCFF225DGN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF379DAN bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF016HFH, ENCFF663MFK, ENCFF667IDX 4553686 ENCODE Processing Pipeline 5688fe449b393c3e3c9963864accea31 https://www.encodeproject.org/files/ENCFF379DAN/@@download/ENCFF379DAN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF675JJV bed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF229TMK, ENCFF334BVY, ENCFF379DAN, ENCFF419RSJ 376046 ENCODE Processing Pipeline 40ae1ffef08368ab94dc4018e8e74904 https://www.encodeproject.org/files/ENCFF675JJV/@@download/ENCFF675JJV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF100KEW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF899FIQ 589027 ENCODE Processing Pipeline 15e099142f0123095c6f6eed2538fac1 https://www.encodeproject.org/files/ENCFF100KEW/@@download/ENCFF100KEW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF359MJN bigWig signal p-value ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF016HFH, ENCFF663MFK 456708354 ENCODE Processing Pipeline 64417321f81d3da1db774141399229b4 https://www.encodeproject.org/files/ENCFF359MJN/@@download/ENCFF359MJN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF205JYD bigWig signal p-value ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF016HFH, ENCFF663MFK, ENCFF667IDX 652520931 ENCODE Processing Pipeline 3c39850f9650cbf4cd594e2956a0d811 https://www.encodeproject.org/files/ENCFF205JYD/@@download/ENCFF205JYD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF334BVY bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF016HFH, ENCFF663MFK 3996228 ENCODE Processing Pipeline 18f7da30e55e49558d9946971bfa7c92 https://www.encodeproject.org/files/ENCFF334BVY/@@download/ENCFF334BVY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF135BGG bigBed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF334BVY 8532270 ENCODE Processing Pipeline d2ed86aab5cfd281ec8e226c57f22c3b https://www.encodeproject.org/files/ENCFF135BGG/@@download/ENCFF135BGG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF899FIQ bed narrowPeak conservative idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF229TMK, ENCFF334BVY, ENCFF379DAN, ENCFF419RSJ 371869 ENCODE Processing Pipeline 83ff94167063cb12ad18bcc4b60bc110 https://www.encodeproject.org/files/ENCFF899FIQ/@@download/ENCFF899FIQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF519XLO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF675JJV 594554 ENCODE Processing Pipeline 2309ae0fe0b0958b282a3dfd37d648f8 https://www.encodeproject.org/files/ENCFF519XLO/@@download/ENCFF519XLO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000YZZ bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZAE 528908013 Michael Snyder, Stanford 4d39d6b306af04446ac8b12d86f507a4 https://www.encodeproject.org/files/ENCFF000YZZ/@@download/ENCFF000YZZ.bam hg19 archived mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000ZAA bigBed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOV 110607 Michael Snyder, Stanford 72a10edbf8db3230bb13bd9ac2554451 https://www.encodeproject.org/files/ENCFF000ZAA/@@download/ENCFF000ZAA.bigBed hg19 archived mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000ZAB bigWig signal ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 378385170 Michael Snyder, Stanford 608149caacd54612e3ca37de2815a904 https://www.encodeproject.org/files/ENCFF000ZAB/@@download/ENCFF000ZAB.bigWig hg19 archived mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000ZAC bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZBF 892770386 Michael Snyder, Stanford 6a7a3c395e5132650b84309049a4a46f https://www.encodeproject.org/files/ENCFF000ZAC/@@download/ENCFF000ZAC.bam hg19 archived mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000ZAE fastq reads ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 405154742 Michael Snyder, Stanford 8cba2bd17f648ba1eaa537849ad8a372 https://www.encodeproject.org/files/ENCFF000ZAE/@@download/ENCFF000ZAE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000ZBF fastq reads ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 660534001 Michael Snyder, Stanford 2130ef12b2ebb03f72e6d188327fc2f3 https://www.encodeproject.org/files/ENCFF000ZBF/@@download/ENCFF000ZBF.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released inconsistent control read length, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF001VOV bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 22633 Michael Snyder, Stanford 486e77ed088efb5ef805a0510c9b024b https://www.encodeproject.org/files/ENCFF001VOV/@@download/ENCFF001VOV.bed.gz hg19 archived mixed read lengths biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF002CYD bed narrowPeak optimal idr thresholded peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 54441 ENCODE Consortium Analysis Working Group e8bdf374770a425d884ec74e902338b6 https://www.encodeproject.org/files/ENCFF002CYD/@@download/ENCFF002CYD.bed.gz hg19 archived mixed read lengths missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF243MMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYD 190306 ENCODE Consortium ddc95d6db2dcaea55734cf27a0191a80 https://www.encodeproject.org/files/ENCFF243MMB/@@download/ENCFF243MMB.bigBed hg19 archived mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF740GXI bam unfiltered alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAE, ENCFF643CGH 481979484 ENCODE Processing Pipeline e413be357ff30ccdee4254f5f12d53c9 https://www.encodeproject.org/files/ENCFF740GXI/@@download/ENCFF740GXI.bam GRCh38 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF339BJP bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZBF, ENCFF643CGH 431688113 ENCODE Processing Pipeline 8c3522f018db0fb6e60d6cdf0c37fe83 https://www.encodeproject.org/files/ENCFF339BJP/@@download/ENCFF339BJP.bam GRCh38 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF263NHR bam unfiltered alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZBF, ENCFF643CGH 896534635 ENCODE Processing Pipeline 2b538fe2d7a4c10aed6696224a968311 https://www.encodeproject.org/files/ENCFF263NHR/@@download/ENCFF263NHR.bam GRCh38 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF470IST bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAE, ENCFF643CGH 230399007 ENCODE Processing Pipeline cd320a6feca82a0cf28344bcfd729961 https://www.encodeproject.org/files/ENCFF470IST/@@download/ENCFF470IST.bam GRCh38 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF763YXP bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF440UUU 2052776 ENCODE Processing Pipeline 291f711da6540d9f17763904a9aa0e40 https://www.encodeproject.org/files/ENCFF763YXP/@@download/ENCFF763YXP.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF956SIV bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF440UUU, ENCFF739PBB 158227 ENCODE Processing Pipeline ecad71f4993868d696e98ca101678310 https://www.encodeproject.org/files/ENCFF956SIV/@@download/ENCFF956SIV.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF798HQZ bigBed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF956SIV 372599 ENCODE Processing Pipeline 99fbd784b500319e387441ad103562a1 https://www.encodeproject.org/files/ENCFF798HQZ/@@download/ENCFF798HQZ.bigBed hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF440UUU bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAE, ENCFF807MUK 230804748 ENCODE Processing Pipeline 327fd90faaf2fa1e4ea961736552682b https://www.encodeproject.org/files/ENCFF440UUU/@@download/ENCFF440UUU.bam hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF283ZLI bigWig fold change over control ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF440UUU, ENCFF739PBB 255471968 ENCODE Processing Pipeline f47efded3c590cb8f68e0ed520d3f336 https://www.encodeproject.org/files/ENCFF283ZLI/@@download/ENCFF283ZLI.bigWig hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF077EAD bed narrowPeak conservative idr thresholded peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF585NXD, ENCFF763YXP, ENCFF956SIV 8866 ENCODE Processing Pipeline 74daa78d138749f85d51db3d7ef6001d https://www.encodeproject.org/files/ENCFF077EAD/@@download/ENCFF077EAD.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF498DOQ bed narrowPeak optimal idr thresholded peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF585NXD, ENCFF763YXP, ENCFF956SIV 18040 ENCODE Processing Pipeline cabac0bdd4bc42dfea03b1f763d569c8 https://www.encodeproject.org/files/ENCFF498DOQ/@@download/ENCFF498DOQ.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF891MMK bigWig signal p-value ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF739PBB 209458763 ENCODE Processing Pipeline 9b82c9dce631d0163e6eb8b00e31cc1e https://www.encodeproject.org/files/ENCFF891MMK/@@download/ENCFF891MMK.bigWig hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF756YPW bigWig signal p-value ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF440UUU, ENCFF739PBB 234491285 ENCODE Processing Pipeline d4270ae5e475abfad6e2090e4c1c21d9 https://www.encodeproject.org/files/ENCFF756YPW/@@download/ENCFF756YPW.bigWig hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF739PBB bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZBF, ENCFF807MUK 432250264 ENCODE Processing Pipeline 5b1dd87b60f08b419f06ae044dd34661 https://www.encodeproject.org/files/ENCFF739PBB/@@download/ENCFF739PBB.bam hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF907SUB bam unfiltered alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAE, ENCFF807MUK 480519815 ENCODE Processing Pipeline ade570ae56ec26699753419914571bec https://www.encodeproject.org/files/ENCFF907SUB/@@download/ENCFF907SUB.bam hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF088UXO bam unfiltered alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZBF, ENCFF807MUK 893679766 ENCODE Processing Pipeline 94b88861a808d2cda9ecee698d58471b https://www.encodeproject.org/files/ENCFF088UXO/@@download/ENCFF088UXO.bam hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF529JVA bigWig signal p-value ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF440UUU 225226695 ENCODE Processing Pipeline 4fdbdfcc31bcc12cc17dddecd8a935d5 https://www.encodeproject.org/files/ENCFF529JVA/@@download/ENCFF529JVA.bigWig hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF141KTV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF498DOQ 74401 ENCODE Processing Pipeline a32852e642621f74d24753a82918c379 https://www.encodeproject.org/files/ENCFF141KTV/@@download/ENCFF141KTV.bigBed hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF160NUJ bigWig fold change over control ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF440UUU 98494998 ENCODE Processing Pipeline 74a330b564c84697d5501b2297e66a95 https://www.encodeproject.org/files/ENCFF160NUJ/@@download/ENCFF160NUJ.bigWig hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF187TJW bigBed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF763YXP 5225330 ENCODE Processing Pipeline 50ff479538a52c07344595e86de22279 https://www.encodeproject.org/files/ENCFF187TJW/@@download/ENCFF187TJW.bigBed hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF294GPS bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF077EAD 60256 ENCODE Processing Pipeline 9b36ed60dce143262ab27869261eeb25 https://www.encodeproject.org/files/ENCFF294GPS/@@download/ENCFF294GPS.bigBed hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF912ZSZ bigWig fold change over control ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF739PBB 168713382 ENCODE Processing Pipeline 483c48aed662738745fc88bb691c1958 https://www.encodeproject.org/files/ENCFF912ZSZ/@@download/ENCFF912ZSZ.bigWig hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF585NXD bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF739PBB 2492541 ENCODE Processing Pipeline fa09b91df9b9e0ad5cd4892b4d9449f9 https://www.encodeproject.org/files/ENCFF585NXD/@@download/ENCFF585NXD.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF357NED bigBed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF585NXD 5103682 ENCODE Processing Pipeline c300d96288aafdc48336ca2a7d1eccc0 https://www.encodeproject.org/files/ENCFF357NED/@@download/ENCFF357NED.bigBed hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF005FYV bam unfiltered alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAH, ENCFF807MUK 1173986585 ENCODE Processing Pipeline db171660d79e7d01b2a09bd162747719 https://www.encodeproject.org/files/ENCFF005FYV/@@download/ENCFF005FYV.bam hg19 released low read length, borderline replicate concordance ENCFF809DZF bam unfiltered alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAK, ENCFF807MUK 1153175764 ENCODE Processing Pipeline c06ac8337d3c79e48fd8efc5682b9dc8 https://www.encodeproject.org/files/ENCFF809DZF/@@download/ENCFF809DZF.bam hg19 released low read length, borderline replicate concordance ENCFF002EAH fastq reads ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 1 36 single-ended 949980687 Michael Snyder, Stanford 4000f397e48449015e8dd69a8bbbe1ac SRA:SRR5111813 https://www.encodeproject.org/files/ENCFF002EAH/@@download/ENCFF002EAH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECL/ released low read length, borderline replicate concordance ENCFF002EAK fastq reads ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 1 36 single-ended 923809952 Michael Snyder, Stanford 7982b53458635c1b73a85c9161662739 SRA:SRR5111812 https://www.encodeproject.org/files/ENCFF002EAK/@@download/ENCFF002EAK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF002ECM/ released low read length, borderline replicate concordance ENCFF123GAA bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF002EAK, ENCFF807MUK 810676696 ENCODE Processing Pipeline d6d9e99133ed185732aa5ea127f2d43f https://www.encodeproject.org/files/ENCFF123GAA/@@download/ENCFF123GAA.bam hg19 released low read length, borderline replicate concordance ENCFF180AFK bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF002EAH, ENCFF807MUK 810340780 ENCODE Processing Pipeline c798f5a663bd415709ec76be1e2fbd1a https://www.encodeproject.org/files/ENCFF180AFK/@@download/ENCFF180AFK.bam hg19 released low read length, borderline replicate concordance ENCFF987KES bigBed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF767PWR 11138435 ENCODE Processing Pipeline 46d62e6612b2b14f8fc250d0cde8e95a https://www.encodeproject.org/files/ENCFF987KES/@@download/ENCFF987KES.bigBed hg19 released low read length, borderline replicate concordance ENCFF481GOL bigWig signal p-value ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF123GAA, ENCFF863STQ 538825951 ENCODE Processing Pipeline 0ac5720617032db2ec11ebb042063d5a https://www.encodeproject.org/files/ENCFF481GOL/@@download/ENCFF481GOL.bigWig hg19 released low read length, borderline replicate concordance ENCFF354IAJ bigWig signal p-value ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF123GAA, ENCFF180AFK, ENCFF425JYG, ENCFF863STQ 1072244706 ENCODE Processing Pipeline 68e406ed94b75636e7076f4edad0a08b https://www.encodeproject.org/files/ENCFF354IAJ/@@download/ENCFF354IAJ.bigWig hg19 released low read length, borderline replicate concordance ENCFF681XIW bigWig fold change over control ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF123GAA, ENCFF180AFK, ENCFF425JYG, ENCFF863STQ 1039553283 ENCODE Processing Pipeline 44d6f02a4bd2b2c2222aea9bbccd058e https://www.encodeproject.org/files/ENCFF681XIW/@@download/ENCFF681XIW.bigWig hg19 released low read length, borderline replicate concordance ENCFF332PXJ bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF180AFK, ENCFF425JYG 4452245 ENCODE Processing Pipeline c76c678b91febf4b32bbee4a07209890 https://www.encodeproject.org/files/ENCFF332PXJ/@@download/ENCFF332PXJ.bed.gz hg19 released low read length, borderline replicate concordance ENCFF735NEP bigBed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF332PXJ 11080071 ENCODE Processing Pipeline 9dc563bfa27574c626da46af10e97d68 https://www.encodeproject.org/files/ENCFF735NEP/@@download/ENCFF735NEP.bigBed hg19 released low read length, borderline replicate concordance ENCFF639JCO bigWig fold change over control ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF180AFK, ENCFF425JYG 432571254 ENCODE Processing Pipeline 1269a7bacfa0ce7ef2bd55a608c659c5 https://www.encodeproject.org/files/ENCFF639JCO/@@download/ENCFF639JCO.bigWig hg19 released low read length, borderline replicate concordance ENCFF784GZF bigBed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF314DTI 11507811 ENCODE Processing Pipeline 3ab3e0ce3e8cad7f0c038693dd360833 https://www.encodeproject.org/files/ENCFF784GZF/@@download/ENCFF784GZF.bigBed hg19 released low read length, borderline replicate concordance ENCFF146LOG bigBed narrowPeak conservative idr thresholded peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF459RDS 273329 ENCODE Processing Pipeline b57b3b3197877d7a5fe62ed760da51a7 https://www.encodeproject.org/files/ENCFF146LOG/@@download/ENCFF146LOG.bigBed hg19 released low read length, borderline replicate concordance ENCFF847SCS bigBed narrowPeak optimal idr thresholded peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF654YPN 286207 ENCODE Processing Pipeline 8c6c3b29c4f3c4b4491e59f70c4039d1 https://www.encodeproject.org/files/ENCFF847SCS/@@download/ENCFF847SCS.bigBed hg19 released low read length, borderline replicate concordance ENCFF822WBJ bigWig signal p-value ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF180AFK, ENCFF425JYG 532937746 ENCODE Processing Pipeline 182cf1e9951540b1e84def798e908a30 https://www.encodeproject.org/files/ENCFF822WBJ/@@download/ENCFF822WBJ.bigWig hg19 released low read length, borderline replicate concordance ENCFF375UNS bigWig fold change over control ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF123GAA, ENCFF863STQ 483484503 ENCODE Processing Pipeline c85ce6c6591cfb5c1757e751331efeec https://www.encodeproject.org/files/ENCFF375UNS/@@download/ENCFF375UNS.bigWig hg19 released low read length, borderline replicate concordance ENCFF767PWR bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF123GAA, ENCFF863STQ 4890176 ENCODE Processing Pipeline ca6a707d4723826b6a0a599ed69c3325 https://www.encodeproject.org/files/ENCFF767PWR/@@download/ENCFF767PWR.bed.gz hg19 released low read length, borderline replicate concordance ENCFF314DTI bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF123GAA, ENCFF180AFK, ENCFF425JYG, ENCFF863STQ 6158788 ENCODE Processing Pipeline 83289942107f928076ba23799cf603ef https://www.encodeproject.org/files/ENCFF314DTI/@@download/ENCFF314DTI.bed.gz hg19 released low read length, borderline replicate concordance ENCFF459RDS bed narrowPeak conservative idr thresholded peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF314DTI, ENCFF332PXJ, ENCFF767PWR 128323 ENCODE Processing Pipeline eaaefc4cea81a08d7d5677aae2513ef6 https://www.encodeproject.org/files/ENCFF459RDS/@@download/ENCFF459RDS.bed.gz hg19 released low read length, borderline replicate concordance ENCFF654YPN bed narrowPeak optimal idr thresholded peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF314DTI, ENCFF332PXJ, ENCFF767PWR 137730 ENCODE Processing Pipeline a6c4c723a4a6672ad59f6ac26c2b0c25 https://www.encodeproject.org/files/ENCFF654YPN/@@download/ENCFF654YPN.bed.gz hg19 released low read length, borderline replicate concordance ENCFF190IFF bam unfiltered alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAK, ENCFF643CGH 1158516778 ENCODE Processing Pipeline c6419605829be3cc3117fb0195c8a0a4 https://www.encodeproject.org/files/ENCFF190IFF/@@download/ENCFF190IFF.bam GRCh38 released low read length, borderline replicate concordance ENCFF725VLJ bam unfiltered alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAH, ENCFF643CGH 1179400817 ENCODE Processing Pipeline d21ccf1d2bbf1767474ca4b53686f0d8 https://www.encodeproject.org/files/ENCFF725VLJ/@@download/ENCFF725VLJ.bam GRCh38 released low read length, borderline replicate concordance ENCFF004JMG bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAK, ENCFF643CGH 810579234 ENCODE Processing Pipeline 8faf9ef5cb6dfb45f07d5087955b5367 https://www.encodeproject.org/files/ENCFF004JMG/@@download/ENCFF004JMG.bam GRCh38 released low read length, borderline replicate concordance ENCFF003TGD bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAH, ENCFF643CGH 810194332 ENCODE Processing Pipeline d2c20005bbe5c6ad662b288474648b99 https://www.encodeproject.org/files/ENCFF003TGD/@@download/ENCFF003TGD.bam GRCh38 released low read length, borderline replicate concordance ENCFF792FSG bigWig signal p-value ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF004JMG, ENCFF918AJW 561273846 ENCODE Processing Pipeline e2d1f1f6ea0a2f80111d5296039ae448 https://www.encodeproject.org/files/ENCFF792FSG/@@download/ENCFF792FSG.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF639NLS bigWig signal p-value ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF003TGD, ENCFF949XNJ 527556312 ENCODE Processing Pipeline 4f5437eb76b6d2cb527251fb8ad65fdd https://www.encodeproject.org/files/ENCFF639NLS/@@download/ENCFF639NLS.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF475LPL bigWig signal p-value ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003TGD, ENCFF004JMG, ENCFF918AJW, ENCFF949XNJ 960339491 ENCODE Processing Pipeline b67c9879c7692688f3dc3862e6872ad4 https://www.encodeproject.org/files/ENCFF475LPL/@@download/ENCFF475LPL.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF308XVW bigWig fold change over control ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF004JMG, ENCFF918AJW 480747563 ENCODE Processing Pipeline 3bf9fe215827b5a214aba6efd226d9fc https://www.encodeproject.org/files/ENCFF308XVW/@@download/ENCFF308XVW.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF331MCK bigWig fold change over control ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF003TGD, ENCFF949XNJ 432640295 ENCODE Processing Pipeline 9142ddc02b5a9b9196e68ed98a94d605 https://www.encodeproject.org/files/ENCFF331MCK/@@download/ENCFF331MCK.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF668LIG bigWig fold change over control ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003TGD, ENCFF004JMG, ENCFF918AJW, ENCFF949XNJ 1040033565 ENCODE Processing Pipeline eb8c53b75c51a81af59e78f43cfd196c https://www.encodeproject.org/files/ENCFF668LIG/@@download/ENCFF668LIG.bigWig GRCh38 released low read length, borderline replicate concordance ENCFF599YMR bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF003TGD, ENCFF949XNJ 4243331 ENCODE Processing Pipeline 6936cb624605a165fc294d1a04c9cda2 https://www.encodeproject.org/files/ENCFF599YMR/@@download/ENCFF599YMR.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF427FBA bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF004JMG, ENCFF918AJW 4630417 ENCODE Processing Pipeline 9e0bb0f8b707a5482925438176c5cc09 https://www.encodeproject.org/files/ENCFF427FBA/@@download/ENCFF427FBA.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF407SGC bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF003TGD, ENCFF004JMG, ENCFF918AJW, ENCFF949XNJ 5747103 ENCODE Processing Pipeline 2ab2ba583f2f88c6cbfc23e4fddf5108 https://www.encodeproject.org/files/ENCFF407SGC/@@download/ENCFF407SGC.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF155OUC bigBed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF407SGC 11459772 ENCODE Processing Pipeline a04f661a2896f7c82bf4f036ae52e92c https://www.encodeproject.org/files/ENCFF155OUC/@@download/ENCFF155OUC.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF948AWL bigBed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF427FBA 10986148 ENCODE Processing Pipeline 40529376cc9cbd1a8dae0c50ab605af2 https://www.encodeproject.org/files/ENCFF948AWL/@@download/ENCFF948AWL.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF025NLD bigBed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF599YMR 10857646 ENCODE Processing Pipeline b0349994c0c4402bfbd62d9e9ef99415 https://www.encodeproject.org/files/ENCFF025NLD/@@download/ENCFF025NLD.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF418TUX bed narrowPeak optimal idr thresholded peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF407SGC, ENCFF419RSJ, ENCFF427FBA, ENCFF599YMR 118487 ENCODE Processing Pipeline f70e4ecc05fd1ad0acd6c42fd9ab6c18 https://www.encodeproject.org/files/ENCFF418TUX/@@download/ENCFF418TUX.bed.gz GRCh38 released low read length, borderline replicate concordance ENCFF144ZOZ bigBed narrowPeak optimal idr thresholded peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF418TUX 260537 ENCODE Processing Pipeline c54d503e7ad9a8b8cf5f2b96c6343efb https://www.encodeproject.org/files/ENCFF144ZOZ/@@download/ENCFF144ZOZ.bigBed GRCh38 released low read length, borderline replicate concordance ENCFF493APP fastq reads ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 1 76 single-ended 1831820877 Richard Myers, HAIB 6907002f4c993d5e928215c45513dd0b SRA:SRR5338776 https://www.encodeproject.org/files/ENCFF493APP/@@download/ENCFF493APP.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF213TBR fastq reads ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 1 76 single-ended 1921021613 Richard Myers, HAIB a113b4c4ab67d0b24b6af3de76ea4214 SRA:SRR5338775 https://www.encodeproject.org/files/ENCFF213TBR/@@download/ENCFF213TBR.fastq.gz Illumina HiSeq 2000 /files/ENCFF302HDW/ released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF683UBX bam unfiltered alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 76 ENCFF493APP, ENCFF807MUK 2225136434 ENCODE Processing Pipeline 3c58a2fff64d4c25a858a3404c1e65ba https://www.encodeproject.org/files/ENCFF683UBX/@@download/ENCFF683UBX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF055WET bam unfiltered alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 76 ENCFF213TBR, ENCFF643CGH 2334933175 ENCODE Processing Pipeline 8ea5ea5a6df838ef709c84b97696d134 https://www.encodeproject.org/files/ENCFF055WET/@@download/ENCFF055WET.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF093BRP bam unfiltered alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 76 ENCFF493APP, ENCFF643CGH 2232814396 ENCODE Processing Pipeline 91d5d3d5c724241b7ca0b460fcdc6167 https://www.encodeproject.org/files/ENCFF093BRP/@@download/ENCFF093BRP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF257TDA bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 76 ENCFF213TBR, ENCFF807MUK 1845614774 ENCODE Processing Pipeline d6b3d24fdec1c49a8290dee554372ae2 https://www.encodeproject.org/files/ENCFF257TDA/@@download/ENCFF257TDA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF631BPZ bam unfiltered alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 76 ENCFF213TBR, ENCFF807MUK 2327921878 ENCODE Processing Pipeline 74e8803e732f005a97c36f783bf2c718 https://www.encodeproject.org/files/ENCFF631BPZ/@@download/ENCFF631BPZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF438WBW bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 76 ENCFF213TBR, ENCFF643CGH 1847116122 ENCODE Processing Pipeline 5c39879adc866f23496d0e6edd677c95 https://www.encodeproject.org/files/ENCFF438WBW/@@download/ENCFF438WBW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF221NHN bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 76 ENCFF493APP, ENCFF643CGH 1686042558 ENCODE Processing Pipeline 4a885d7cfebc1bb4caa151350d8dc881 https://www.encodeproject.org/files/ENCFF221NHN/@@download/ENCFF221NHN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF749AGZ bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 76 ENCFF493APP, ENCFF807MUK 1684587174 ENCODE Processing Pipeline 0e3e88a36691631833c877b39126beae https://www.encodeproject.org/files/ENCFF749AGZ/@@download/ENCFF749AGZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF695NQS bigWig signal p-value ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF438WBW 647757811 ENCODE Processing Pipeline b64610afb5ca07b5007b43d511290fa3 https://www.encodeproject.org/files/ENCFF695NQS/@@download/ENCFF695NQS.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF633JNF bigWig signal p-value ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF221NHN 599407994 ENCODE Processing Pipeline eb2af68775660d90e761af038f9d8021 https://www.encodeproject.org/files/ENCFF633JNF/@@download/ENCFF633JNF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF703MVX bigWig signal p-value ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF221NHN, ENCFF438WBW 611547948 ENCODE Processing Pipeline 69933c56438e8cc6b3469e08a6fa8e15 https://www.encodeproject.org/files/ENCFF703MVX/@@download/ENCFF703MVX.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF287DEY bigWig fold change over control ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF221NHN 572603693 ENCODE Processing Pipeline 142dc44e7dc14ee4d20323ff91477db9 https://www.encodeproject.org/files/ENCFF287DEY/@@download/ENCFF287DEY.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF212QLU bigWig fold change over control ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF438WBW 617620947 ENCODE Processing Pipeline 85321bcb890b065524c8f2081552d9c5 https://www.encodeproject.org/files/ENCFF212QLU/@@download/ENCFF212QLU.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF456DQX bigBed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF976CEN 13118517 ENCODE Processing Pipeline aede8d01acf64defdd813e6a961e9fc1 https://www.encodeproject.org/files/ENCFF456DQX/@@download/ENCFF456DQX.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF935HCT bigBed narrowPeak conservative idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF132YJB 376451 ENCODE Processing Pipeline 2d50fdb855279ec3569f66074e8ab0a2 https://www.encodeproject.org/files/ENCFF935HCT/@@download/ENCFF935HCT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF569VMP bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF438WBW 5946519 ENCODE Processing Pipeline b8ccd6d786e4abdc325601da1dfdba33 https://www.encodeproject.org/files/ENCFF569VMP/@@download/ENCFF569VMP.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF132YJB bed narrowPeak conservative idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317BYR, ENCFF419RSJ, ENCFF569VMP, ENCFF976CEN 181606 ENCODE Processing Pipeline 09eba94d27bc896e3c95632819c8ce90 https://www.encodeproject.org/files/ENCFF132YJB/@@download/ENCFF132YJB.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF317BYR bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF221NHN 5891898 ENCODE Processing Pipeline e3399067e8ca20a482d1924063af8710 https://www.encodeproject.org/files/ENCFF317BYR/@@download/ENCFF317BYR.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF976CEN bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF221NHN, ENCFF438WBW 6755735 ENCODE Processing Pipeline f3a8934423f406f7e52bd623e8577733 https://www.encodeproject.org/files/ENCFF976CEN/@@download/ENCFF976CEN.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF707FKN bigBed narrowPeak optimal idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF281KMO 381302 ENCODE Processing Pipeline fcc4140ce500c39f72217c0aa843fea3 https://www.encodeproject.org/files/ENCFF707FKN/@@download/ENCFF707FKN.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF702EUF bigWig fold change over control ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF221NHN, ENCFF438WBW 968763314 ENCODE Processing Pipeline 4f00a9559fc42984c25997cfaf2f0a8b https://www.encodeproject.org/files/ENCFF702EUF/@@download/ENCFF702EUF.bigWig GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF988NHT bigBed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF569VMP 13091890 ENCODE Processing Pipeline a3ed2fe110218f7be833a29f7c65f6c3 https://www.encodeproject.org/files/ENCFF988NHT/@@download/ENCFF988NHT.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF364HMC bigBed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF317BYR 13281040 ENCODE Processing Pipeline da0de318088b514a4c4c8207f1b0f506 https://www.encodeproject.org/files/ENCFF364HMC/@@download/ENCFF364HMC.bigBed GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF281KMO bed narrowPeak optimal idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF317BYR, ENCFF419RSJ, ENCFF569VMP, ENCFF976CEN 184064 ENCODE Processing Pipeline 3991be1edd1df07f3eaf05cf43d1c995 https://www.encodeproject.org/files/ENCFF281KMO/@@download/ENCFF281KMO.bed.gz GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF042VCR bigWig signal p-value ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF749AGZ 1409815533 ENCODE Processing Pipeline 9f2e72aee4e0564ce34cb40e91927273 https://www.encodeproject.org/files/ENCFF042VCR/@@download/ENCFF042VCR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795NBH bigWig signal p-value ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF257TDA 1278467795 ENCODE Processing Pipeline 3161b2586f933b44795e8ce30bcf9171 https://www.encodeproject.org/files/ENCFF795NBH/@@download/ENCFF795NBH.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF868NAM bigWig signal p-value ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF257TDA, ENCFF749AGZ 1632833974 ENCODE Processing Pipeline 5500b5974429b56ad93f1e0520fd6d1a https://www.encodeproject.org/files/ENCFF868NAM/@@download/ENCFF868NAM.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF673VKR bigWig fold change over control ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF749AGZ 1051095662 ENCODE Processing Pipeline a747b3c82d7c4435612b487ea17f310f https://www.encodeproject.org/files/ENCFF673VKR/@@download/ENCFF673VKR.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF251OUD bigWig fold change over control ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF257TDA, ENCFF749AGZ 1586051095 ENCODE Processing Pipeline a627cc0d771a27b159eed3a2e87fc231 https://www.encodeproject.org/files/ENCFF251OUD/@@download/ENCFF251OUD.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF068OLO bigWig fold change over control ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF257TDA 1123989982 ENCODE Processing Pipeline 5a3f389f2317cd1a7fe15705835e3b99 https://www.encodeproject.org/files/ENCFF068OLO/@@download/ENCFF068OLO.bigWig hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF257NTY bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF257TDA 6739981 ENCODE Processing Pipeline 3f0a7592b6ffcfa92d2df40bab24c6ef https://www.encodeproject.org/files/ENCFF257NTY/@@download/ENCFF257NTY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF922DWF bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF203ABR, ENCFF257TDA, ENCFF749AGZ 7057501 ENCODE Processing Pipeline 45d851ecd3ba8303dc5e47124e4a0e70 https://www.encodeproject.org/files/ENCFF922DWF/@@download/ENCFF922DWF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF923IQR bigBed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF827WKX 13320851 ENCODE Processing Pipeline 99d433e848da97d3dea5d6fae04cebfd https://www.encodeproject.org/files/ENCFF923IQR/@@download/ENCFF923IQR.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF827WKX bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF749AGZ 6575494 ENCODE Processing Pipeline 70cf963599a4067dd0af68d639846f8b https://www.encodeproject.org/files/ENCFF827WKX/@@download/ENCFF827WKX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF057MON bed narrowPeak optimal idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF257NTY, ENCFF827WKX, ENCFF922DWF 165137 ENCODE Processing Pipeline c9f063add4945005f635fff52fb8f507 https://www.encodeproject.org/files/ENCFF057MON/@@download/ENCFF057MON.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF744NWJ bigBed narrowPeak optimal idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF057MON 363687 ENCODE Processing Pipeline d130612e079506ba689de484e6b70cbc https://www.encodeproject.org/files/ENCFF744NWJ/@@download/ENCFF744NWJ.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF063ORV bigBed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF922DWF 13093184 ENCODE Processing Pipeline 552ef447431ad21f196bf31868ac6638 https://www.encodeproject.org/files/ENCFF063ORV/@@download/ENCFF063ORV.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF922ZVG bigBed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF257NTY 13115961 ENCODE Processing Pipeline 88cf288de04c4376e5b87072674f7a75 https://www.encodeproject.org/files/ENCFF922ZVG/@@download/ENCFF922ZVG.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF955RFS bed narrowPeak conservative idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF001TDO, ENCFF257NTY, ENCFF827WKX, ENCFF922DWF 161766 ENCODE Processing Pipeline a709e21cf01f973f2242dd77eb70524b https://www.encodeproject.org/files/ENCFF955RFS/@@download/ENCFF955RFS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF012JPN bigBed narrowPeak conservative idr thresholded peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1, 2 ENCFF955RFS 358459 ENCODE Processing Pipeline 260e5f890ede49337626b99c1fc0a35a https://www.encodeproject.org/files/ENCFF012JPN/@@download/ENCFF012JPN.bigBed hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF185SFC fastq reads ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF768WER 1698845514 Richard Myers, HAIB fcff17b60a21273cc168211099a84e71 SRA:SRR6212909 https://www.encodeproject.org/files/ENCFF185SFC/@@download/ENCFF185SFC.fastq.gz Illumina HiSeq 2000 /files/ENCFF098YMI/ released antibody characterized with exemption missing control alignments ENCFF768WER fastq reads ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF185SFC 1778240568 Richard Myers, HAIB b9ab111e3dcce5319d5d5fcfb6907f53 SRA:SRR6212909 https://www.encodeproject.org/files/ENCFF768WER/@@download/ENCFF768WER.fastq.gz Illumina HiSeq 2000 /files/ENCFF107FJA/ released antibody characterized with exemption missing control alignments ENCFF086PII bam unfiltered alignments ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF185SFC, ENCFF643CGH, ENCFF768WER 4329952843 ENCODE Processing Pipeline 480f1715bb7224caed5975e966178013 https://www.encodeproject.org/files/ENCFF086PII/@@download/ENCFF086PII.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF468RFT bam unfiltered alignments ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF185SFC, ENCFF768WER, ENCFF807MUK 4307710265 ENCODE Processing Pipeline 40d702ee839fb95b425f7949cbe7ecf1 https://www.encodeproject.org/files/ENCFF468RFT/@@download/ENCFF468RFT.bam hg19 released antibody characterized with exemption missing control alignments ENCFF786STT bam alignments ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF185SFC, ENCFF643CGH, ENCFF768WER 3312120280 ENCODE Processing Pipeline ba5189277f292ce7aa6595e26b47f7b6 https://www.encodeproject.org/files/ENCFF786STT/@@download/ENCFF786STT.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF991CXG bam alignments ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF185SFC, ENCFF768WER, ENCFF807MUK 3307515618 ENCODE Processing Pipeline 1802061a6d8b4d02df3997f052052545 https://www.encodeproject.org/files/ENCFF991CXG/@@download/ENCFF991CXG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF329YTM bigWig fold change over control ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF786STT 1199139066 ENCODE Processing Pipeline c63de91de8abd772f440d70078633ab4 https://www.encodeproject.org/files/ENCFF329YTM/@@download/ENCFF329YTM.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF768QNP bigWig signal p-value ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF786STT 1152440020 ENCODE Processing Pipeline 4ba6e7d408e94d428ecfa392279948d5 https://www.encodeproject.org/files/ENCFF768QNP/@@download/ENCFF768QNP.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF458VJY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF046VTZ 16477 ENCODE Processing Pipeline bcdbd024415fe57f55d1e9d730c1d790 https://www.encodeproject.org/files/ENCFF458VJY/@@download/ENCFF458VJY.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF835FOG bigBed narrowPeak peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF516KJT 11488594 ENCODE Processing Pipeline 11d1fd8df388210ddbeba413b38a02ea https://www.encodeproject.org/files/ENCFF835FOG/@@download/ENCFF835FOG.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF046VTZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF516KJT 752 ENCODE Processing Pipeline e2a612783343cc957cba0d97702f4917 https://www.encodeproject.org/files/ENCFF046VTZ/@@download/ENCFF046VTZ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF516KJT bed narrowPeak peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF786STT 5156502 ENCODE Processing Pipeline c5f895927b5147a518ddd5e5f5d24ec8 https://www.encodeproject.org/files/ENCFF516KJT/@@download/ENCFF516KJT.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF200ZMM bigWig signal p-value ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF991CXG 1379066098 ENCODE Processing Pipeline 456eb39b9188fb245c85ce95674c0424 https://www.encodeproject.org/files/ENCFF200ZMM/@@download/ENCFF200ZMM.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF774YJG bigWig fold change over control ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF991CXG 1192870330 ENCODE Processing Pipeline 10c038083b15c54ec7c1f7542f379292 https://www.encodeproject.org/files/ENCFF774YJG/@@download/ENCFF774YJG.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF426BJU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF745GHM 456 ENCODE Processing Pipeline f819f3abbe4f2b0d4fbe2bcf6286a209 https://www.encodeproject.org/files/ENCFF426BJU/@@download/ENCFF426BJU.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF695AMM bigBed narrowPeak peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF745GHM 11460033 ENCODE Processing Pipeline c18279692310944217c0c4753bc8af32 https://www.encodeproject.org/files/ENCFF695AMM/@@download/ENCFF695AMM.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF255NOE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF426BJU 15217 ENCODE Processing Pipeline 30041b023aec11e2512591847d6483b4 https://www.encodeproject.org/files/ENCFF255NOE/@@download/ENCFF255NOE.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF745GHM bed narrowPeak peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF991CXG 5150204 ENCODE Processing Pipeline 38ed709911e0f7a34d5f0bd3aea6834d https://www.encodeproject.org/files/ENCFF745GHM/@@download/ENCFF745GHM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF000WTD bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 568222661 Michael Snyder, Stanford 851d57fdfc5bef1195d42b7bb40a3024 https://www.encodeproject.org/files/ENCFF000WTD/@@download/ENCFF000WTD.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WTE bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VGW 2351877 Michael Snyder, Stanford 28ce3e3d8f8eb7f8c6c903571b3a432e https://www.encodeproject.org/files/ENCFF000WTE/@@download/ENCFF000WTE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WTF fastq reads ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1084342469 Michael Snyder, Stanford bb43ee92cf8d6bfaa66ed4ab0045ecdf https://www.encodeproject.org/files/ENCFF000WTF/@@download/ENCFF000WTF.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WTH fastq reads ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1095438527 Michael Snyder, Stanford 4d3171c1ac164629555a0a373dca0ec9 https://www.encodeproject.org/files/ENCFF000WTH/@@download/ENCFF000WTH.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WTJ bigWig signal ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 417495815 Michael Snyder, Stanford c281468289fb41a7b86b40ff73e6f531 https://www.encodeproject.org/files/ENCFF000WTJ/@@download/ENCFF000WTJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000WTK bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 546246339 Michael Snyder, Stanford 431b75157e5dfa3db09b8fbf54fc8828 https://www.encodeproject.org/files/ENCFF000WTK/@@download/ENCFF000WTK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VGW bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1029439 Michael Snyder, Stanford d75284fe09a88299980f36117a98339e https://www.encodeproject.org/files/ENCFF001VGW/@@download/ENCFF001VGW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CQY bed narrowPeak optimal idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 244022 ENCODE Consortium Analysis Working Group 525cce1f671f1810aa1c48d2f85a2d6a https://www.encodeproject.org/files/ENCFF002CQY/@@download/ENCFF002CQY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF016RHZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQY 564018 ENCODE Consortium be349ad172a9226b09bc1d0fec73474f https://www.encodeproject.org/files/ENCFF016RHZ/@@download/ENCFF016RHZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF568WZX bam unfiltered alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WTH, ENCFF643CGH 1232196908 ENCODE Processing Pipeline 30be10b1160c25cbceb7b614ed238479 https://www.encodeproject.org/files/ENCFF568WZX/@@download/ENCFF568WZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF963DAM bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WTH, ENCFF643CGH 803109185 ENCODE Processing Pipeline bffb5f2411f1bedd9441ad9aaa01be81 https://www.encodeproject.org/files/ENCFF963DAM/@@download/ENCFF963DAM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF168FJY bam unfiltered alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WTF, ENCFF643CGH 1257423230 ENCODE Processing Pipeline 30cd000b313e16c1781aa61b76198f44 https://www.encodeproject.org/files/ENCFF168FJY/@@download/ENCFF168FJY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460PKZ bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WTF, ENCFF643CGH 861761993 ENCODE Processing Pipeline 007a475782d2510246a2e53c0a7c0e1b https://www.encodeproject.org/files/ENCFF460PKZ/@@download/ENCFF460PKZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976ANH bam unfiltered alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WTH, ENCFF807MUK 1227293404 ENCODE Processing Pipeline 9a0dba63347d516ef8d34c5a5c54d33b https://www.encodeproject.org/files/ENCFF976ANH/@@download/ENCFF976ANH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF950LBU bam unfiltered alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WTF, ENCFF807MUK 1252352412 ENCODE Processing Pipeline 0760fc0035db039c2ea6c9590cf11c05 https://www.encodeproject.org/files/ENCFF950LBU/@@download/ENCFF950LBU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF632FAF bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WTH, ENCFF807MUK 803563721 ENCODE Processing Pipeline 31a333fec0174fcc3cf74b7d78d42b93 https://www.encodeproject.org/files/ENCFF632FAF/@@download/ENCFF632FAF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF437UHI bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WTF, ENCFF807MUK 862214865 ENCODE Processing Pipeline 8bc2a498587e5c33166ef933c5ab0960 https://www.encodeproject.org/files/ENCFF437UHI/@@download/ENCFF437UHI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF118SQE bigWig signal p-value ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF460PKZ, ENCFF513EWK 573831834 ENCODE Processing Pipeline 1b4f59074fa687df917f90dffb80a11a https://www.encodeproject.org/files/ENCFF118SQE/@@download/ENCFF118SQE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF626WJE bigWig signal p-value ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF437UHI, ENCFF599MVB 585583271 ENCODE Processing Pipeline c3d99355fbf757ea7b1bdd9fcae32e2f https://www.encodeproject.org/files/ENCFF626WJE/@@download/ENCFF626WJE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF024ORT bigWig signal p-value ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF632FAF 569424267 ENCODE Processing Pipeline 6e9d7f263a7a381675317b38fc813111 https://www.encodeproject.org/files/ENCFF024ORT/@@download/ENCFF024ORT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF057LTY bigWig signal p-value ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF437UHI, ENCFF599MVB, ENCFF632FAF 779208282 ENCODE Processing Pipeline f0e8eb762072fc0175f9c2251cc42b12 https://www.encodeproject.org/files/ENCFF057LTY/@@download/ENCFF057LTY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF027FBY bigWig fold change over control ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF632FAF 471538975 ENCODE Processing Pipeline fa9751e21cf25025b5cfeab3181476db https://www.encodeproject.org/files/ENCFF027FBY/@@download/ENCFF027FBY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF912PQP bigWig fold change over control ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF437UHI, ENCFF599MVB 496285658 ENCODE Processing Pipeline 8fe41f7f685bcd5d87d8918d68398de1 https://www.encodeproject.org/files/ENCFF912PQP/@@download/ENCFF912PQP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF484XSW bigWig signal p-value ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF513EWK, ENCFF963DAM 661399382 ENCODE Processing Pipeline 2046b2e371b88c4ba14424db714f4256 https://www.encodeproject.org/files/ENCFF484XSW/@@download/ENCFF484XSW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189XFG bigWig signal p-value ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF460PKZ, ENCFF513EWK, ENCFF963DAM 776540108 ENCODE Processing Pipeline d7cac990e7279ced34dfde1ba9410349 https://www.encodeproject.org/files/ENCFF189XFG/@@download/ENCFF189XFG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF220AJW bigWig fold change over control ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF460PKZ, ENCFF513EWK 503557423 ENCODE Processing Pipeline c8a3666e8cb925b298897893da9de828 https://www.encodeproject.org/files/ENCFF220AJW/@@download/ENCFF220AJW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338SNH bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF437UHI, ENCFF599MVB 5302704 ENCODE Processing Pipeline d3cd21bd45637001a6a246301c7291c1 https://www.encodeproject.org/files/ENCFF338SNH/@@download/ENCFF338SNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF981HAA bigWig fold change over control ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF437UHI, ENCFF599MVB, ENCFF632FAF 803127279 ENCODE Processing Pipeline c68dbb9adf4a1e09f938845b1bb15e29 https://www.encodeproject.org/files/ENCFF981HAA/@@download/ENCFF981HAA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339LKC bigWig fold change over control ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF513EWK, ENCFF963DAM 473648435 ENCODE Processing Pipeline bc0b842cd59ad412d959391e8a732d4c https://www.encodeproject.org/files/ENCFF339LKC/@@download/ENCFF339LKC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF162PXN bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF632FAF 4866657 ENCODE Processing Pipeline cb09e43a8548d96a6b0d7f6dd4a2ed3c https://www.encodeproject.org/files/ENCFF162PXN/@@download/ENCFF162PXN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065SXF bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF437UHI, ENCFF599MVB, ENCFF632FAF 5926004 ENCODE Processing Pipeline 234eae1b76dfe0a895ffc037e3a49bcc https://www.encodeproject.org/files/ENCFF065SXF/@@download/ENCFF065SXF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF174EMP bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF338SNH 11391991 ENCODE Processing Pipeline b0e4ab6915795afee9bd080ea672d779 https://www.encodeproject.org/files/ENCFF174EMP/@@download/ENCFF174EMP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF744ISC bigWig fold change over control ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF460PKZ, ENCFF513EWK, ENCFF963DAM 807922917 ENCODE Processing Pipeline 95cdd0c3b466f69f517ddbfa309c7901 https://www.encodeproject.org/files/ENCFF744ISC/@@download/ENCFF744ISC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF773UNN bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF162PXN 11284287 ENCODE Processing Pipeline 48ed91a060909aba5e69a0dde3a5c726 https://www.encodeproject.org/files/ENCFF773UNN/@@download/ENCFF773UNN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF153VXN bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF460PKZ, ENCFF513EWK 5264615 ENCODE Processing Pipeline 97e8478881be19846f9a1b66f23650f8 https://www.encodeproject.org/files/ENCFF153VXN/@@download/ENCFF153VXN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF691EXP bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF065SXF 13776475 ENCODE Processing Pipeline 792ce586ab8592a6da4dd26bfdac8f4c https://www.encodeproject.org/files/ENCFF691EXP/@@download/ENCFF691EXP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364GWZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF667QDD 367342 ENCODE Processing Pipeline 1da4b950b51dd0b627ad34df447b5236 https://www.encodeproject.org/files/ENCFF364GWZ/@@download/ENCFF364GWZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF667QDD bed narrowPeak conservative idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF065SXF, ENCFF162PXN, ENCFF338SNH 209078 ENCODE Processing Pipeline 9d19d4ebec04808742ed2b537a6029fe https://www.encodeproject.org/files/ENCFF667QDD/@@download/ENCFF667QDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF772GTV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF760AQQ 488188 ENCODE Processing Pipeline e6c8335d20f247da082af05daf4d5a2f https://www.encodeproject.org/files/ENCFF772GTV/@@download/ENCFF772GTV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760AQQ bed narrowPeak optimal idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF065SXF, ENCFF162PXN, ENCFF338SNH 233544 ENCODE Processing Pipeline 66b5655b705d61f43eef9a3327e5df2b https://www.encodeproject.org/files/ENCFF760AQQ/@@download/ENCFF760AQQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF265POT bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF513EWK, ENCFF963DAM 4755137 ENCODE Processing Pipeline f4fe3a21d7ce1e7611f591b6baa2354f https://www.encodeproject.org/files/ENCFF265POT/@@download/ENCFF265POT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF038FCG bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF265POT 11254078 ENCODE Processing Pipeline 559f074b98bfc4268332399b22b67ecd https://www.encodeproject.org/files/ENCFF038FCG/@@download/ENCFF038FCG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279SMK bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF460PKZ, ENCFF513EWK, ENCFF963DAM 5885586 ENCODE Processing Pipeline 157ad11232ddf333233e848d38d97b2e https://www.encodeproject.org/files/ENCFF279SMK/@@download/ENCFF279SMK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF148KQO bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF153VXN 11402581 ENCODE Processing Pipeline b2db49766f8a275c671013b96470700e https://www.encodeproject.org/files/ENCFF148KQO/@@download/ENCFF148KQO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF118OAD bigBed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF279SMK 13788402 ENCODE Processing Pipeline 36f6892d4ae04784fd4c8db9bf420383 https://www.encodeproject.org/files/ENCFF118OAD/@@download/ENCFF118OAD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF443HNU bed narrowPeak optimal idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF153VXN, ENCFF265POT, ENCFF279SMK, ENCFF419RSJ 237702 ENCODE Processing Pipeline b507ee46a549c51ca139b12f285e9515 https://www.encodeproject.org/files/ENCFF443HNU/@@download/ENCFF443HNU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF890LZM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF446WOD 370663 ENCODE Processing Pipeline 9ec3f2960e375c154371197a07b6131e https://www.encodeproject.org/files/ENCFF890LZM/@@download/ENCFF890LZM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF446WOD bed narrowPeak conservative idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF153VXN, ENCFF265POT, ENCFF279SMK, ENCFF419RSJ 211864 ENCODE Processing Pipeline 9b391a4a8eef200f1a9c73ae9ffbb748 https://www.encodeproject.org/files/ENCFF446WOD/@@download/ENCFF446WOD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF677VEL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF443HNU 494288 ENCODE Processing Pipeline 2d53eab34eb82b081ba32a8851ab5a83 https://www.encodeproject.org/files/ENCFF677VEL/@@download/ENCFF677VEL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF322TJU fastq reads ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF384MEM 3852640652 Michael Snyder, Stanford 6286ddf680f30dc3771f7401e4641827 SRA:SRR6214188 https://www.encodeproject.org/files/ENCFF322TJU/@@download/ENCFF322TJU.fastq.gz Illumina HiSeq 4000 /files/ENCFF282OJG/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF384MEM fastq reads ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF322TJU 3202028446 Michael Snyder, Stanford 770229c903355b3e6e9a66732e6d3212 SRA:SRR6214188 https://www.encodeproject.org/files/ENCFF384MEM/@@download/ENCFF384MEM.fastq.gz Illumina HiSeq 4000 /files/ENCFF330ZZV/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF922YXF bam unfiltered alignments ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF322TJU, ENCFF384MEM, ENCFF643CGH 6660390090 ENCODE Processing Pipeline 1ff9873248c7521a2bca55c200b5ae58 https://www.encodeproject.org/files/ENCFF922YXF/@@download/ENCFF922YXF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF787NSD bam alignments ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF322TJU, ENCFF384MEM, ENCFF643CGH 4938912931 ENCODE Processing Pipeline 99158f63c5ab73c6b81db4cbcda48ab5 https://www.encodeproject.org/files/ENCFF787NSD/@@download/ENCFF787NSD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF773QJK bam unfiltered alignments ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF322TJU, ENCFF384MEM, ENCFF807MUK 6650873093 ENCODE Processing Pipeline eab492047b1c5c104f908503b5446b0b https://www.encodeproject.org/files/ENCFF773QJK/@@download/ENCFF773QJK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF817IUK bam alignments ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF322TJU, ENCFF384MEM, ENCFF807MUK 4931255409 ENCODE Processing Pipeline 57028c99c679258b8b060225c017c9fe https://www.encodeproject.org/files/ENCFF817IUK/@@download/ENCFF817IUK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF077ESE bigWig signal p-value ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF792NXA, ENCFF817IUK 1242565079 ENCODE Processing Pipeline eb498146f6ba8db6b1e599a312ac7770 https://www.encodeproject.org/files/ENCFF077ESE/@@download/ENCFF077ESE.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF618EGC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF570SMG 643132 ENCODE Processing Pipeline e8ac102c062d1ea0dced5e7258a80515 https://www.encodeproject.org/files/ENCFF618EGC/@@download/ENCFF618EGC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF066UFH bigWig fold change over control ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF792NXA, ENCFF817IUK 1405318290 ENCODE Processing Pipeline a3a978f187ce9c12811239b14a91facb https://www.encodeproject.org/files/ENCFF066UFH/@@download/ENCFF066UFH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF955ZBA bigBed narrowPeak peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF953NJX 11303171 ENCODE Processing Pipeline a7578025d839a67ffdf005e5c4bfed92 https://www.encodeproject.org/files/ENCFF955ZBA/@@download/ENCFF955ZBA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF953NJX bed narrowPeak peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF792NXA, ENCFF817IUK 6593429 ENCODE Processing Pipeline 88c95780223a3e812645a67aa6c12e11 https://www.encodeproject.org/files/ENCFF953NJX/@@download/ENCFF953NJX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF570SMG bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF953NJX 273104 ENCODE Processing Pipeline d3bea6d7379f013a21da790857085c13 https://www.encodeproject.org/files/ENCFF570SMG/@@download/ENCFF570SMG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF307DAY bigWig signal p-value ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF563SSP, ENCFF787NSD 1243289594 ENCODE Processing Pipeline 2a344f80d5386ec460fb582cfefd79a4 https://www.encodeproject.org/files/ENCFF307DAY/@@download/ENCFF307DAY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF117QXU bigWig fold change over control ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF563SSP, ENCFF787NSD 1405554930 ENCODE Processing Pipeline 7771ba9fa9b3e7ebce38fb75b05b95dc https://www.encodeproject.org/files/ENCFF117QXU/@@download/ENCFF117QXU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF835RDW bed narrowPeak peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF563SSP, ENCFF787NSD 6620681 ENCODE Processing Pipeline 6feaa4d9102fae28442e5837ad33c9ef https://www.encodeproject.org/files/ENCFF835RDW/@@download/ENCFF835RDW.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF016APK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF835RDW 282821 ENCODE Processing Pipeline 206db001aef6681d540d39d3859c032c https://www.encodeproject.org/files/ENCFF016APK/@@download/ENCFF016APK.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF901AGZ bigBed narrowPeak peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF835RDW 11343080 ENCODE Processing Pipeline db6ac38504708f59bf240b7e753b35f8 https://www.encodeproject.org/files/ENCFF901AGZ/@@download/ENCFF901AGZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF573CDN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF016APK 658395 ENCODE Processing Pipeline abe1e626c9a972e5ab071aed8fc84042 https://www.encodeproject.org/files/ENCFF573CDN/@@download/ENCFF573CDN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000YIZ bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YPL 706078949 Sherman Weissman, Yale 7fd756d21b6e17b5082bfe921a80f249 https://www.encodeproject.org/files/ENCFF000YIZ/@@download/ENCFF000YIZ.bam hg19 archived mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YJA bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMM 218316 Sherman Weissman, Yale 9146f7089183afcd46667405b7f3582e https://www.encodeproject.org/files/ENCFF000YJA/@@download/ENCFF000YJA.bigBed hg19 archived mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YJB bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YPN 849052701 Sherman Weissman, Yale 776839835931527c9fc8e443575b3ecf https://www.encodeproject.org/files/ENCFF000YJB/@@download/ENCFF000YJB.bam hg19 archived mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YJC bigWig signal ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 344654691 Sherman Weissman, Yale 1bbac3736646ab6e07265e478ad7f3ec https://www.encodeproject.org/files/ENCFF000YJC/@@download/ENCFF000YJC.bigWig hg19 archived mild to moderate bottlenecking, mixed read lengths missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YPL fastq reads ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 533218447 Sherman Weissman, Yale 74b7d26cc18e392b830f5da46be6156a https://www.encodeproject.org/files/ENCFF000YPL/@@download/ENCFF000YPL.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released mild to moderate bottlenecking, inconsistent control read length, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000YPN fastq reads ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 726579785 Sherman Weissman, Yale 093e3c61fabba5398cb2fdc9297dc1ee https://www.encodeproject.org/files/ENCFF000YPN/@@download/ENCFF000YPN.fastq.gz Illumina Genome Analyzer /files/ENCFF000YPM/ released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF001VMM bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 79217 Sherman Weissman, Yale 1d4d0d158f699f5cf4263fe5ad85e9a9 https://www.encodeproject.org/files/ENCFF001VMM/@@download/ENCFF001VMM.bed.gz hg19 archived mild to moderate bottlenecking, mixed read lengths missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF002CWA bed narrowPeak optimal idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 183099 ENCODE Consortium Analysis Working Group 51f6da08d5b1a787ae904ac0bc01e2bc https://www.encodeproject.org/files/ENCFF002CWA/@@download/ENCFF002CWA.bed.gz hg19 archived mild to moderate bottlenecking, mixed read lengths missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF262KKZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWA 370225 ENCODE Consortium 8bdb9e52e87fe4b03b42452851c669bd https://www.encodeproject.org/files/ENCFF262KKZ/@@download/ENCFF262KKZ.bigBed hg19 archived mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF842TJX bam unfiltered alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPN, ENCFF643CGH 782636164 ENCODE Processing Pipeline 4c650abf6cf46e0bd3417d53cd2e5cdc https://www.encodeproject.org/files/ENCFF842TJX/@@download/ENCFF842TJX.bam GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF697LPL bam unfiltered alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPL, ENCFF643CGH 708742973 ENCODE Processing Pipeline 3cb94c1f1fecbc3055a90c6762b957be https://www.encodeproject.org/files/ENCFF697LPL/@@download/ENCFF697LPL.bam GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF144QMS bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF749RRI, ENCFF942FFX 1971851 ENCODE Processing Pipeline 99d446777be9c129bb2140ecaeadf9e3 https://www.encodeproject.org/files/ENCFF144QMS/@@download/ENCFF144QMS.bed.gz GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF680SCG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF167WUZ 330755 ENCODE Processing Pipeline 2a2b54c67b86a32ce2c8a1d93277c30e https://www.encodeproject.org/files/ENCFF680SCG/@@download/ENCFF680SCG.bigBed GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF198YAZ bigWig fold change over control ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF749RRI, ENCFF784MLU, ENCFF942FFX 215946716 ENCODE Processing Pipeline 52980da42cf77a5110d29f813439d8e7 https://www.encodeproject.org/files/ENCFF198YAZ/@@download/ENCFF198YAZ.bigWig GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF012RZJ bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF563FUW 4388152 ENCODE Processing Pipeline e79be4039b00ecfd942e3976ddb0ffbc https://www.encodeproject.org/files/ENCFF012RZJ/@@download/ENCFF012RZJ.bigBed GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF914AMK bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF144QMS 4109659 ENCODE Processing Pipeline 34fa421264226c2f4e7bd389c23251e6 https://www.encodeproject.org/files/ENCFF914AMK/@@download/ENCFF914AMK.bigBed GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF715XSB bigWig signal p-value ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF784MLU, ENCFF942FFX 194088333 ENCODE Processing Pipeline 7ce2e539203a2ae39d6f907c2414590f https://www.encodeproject.org/files/ENCFF715XSB/@@download/ENCFF715XSB.bigWig GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF590KNT bigWig fold change over control ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF784MLU, ENCFF942FFX 128807902 ENCODE Processing Pipeline dd2f712a461377f6d2f56d5cc5109f3b https://www.encodeproject.org/files/ENCFF590KNT/@@download/ENCFF590KNT.bigWig GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF909CSJ bigWig signal p-value ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF749RRI, ENCFF784MLU, ENCFF942FFX 236895971 ENCODE Processing Pipeline 768223b6abff3f348a86cf2a351253a6 https://www.encodeproject.org/files/ENCFF909CSJ/@@download/ENCFF909CSJ.bigWig GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF749RRI bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPN, ENCFF643CGH 261318556 ENCODE Processing Pipeline 5c0e749088a06d123c8db295b0afab9f https://www.encodeproject.org/files/ENCFF749RRI/@@download/ENCFF749RRI.bam GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF291UMT bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF749RRI, ENCFF784MLU, ENCFF942FFX 4193394 ENCODE Processing Pipeline ac42bf04d7ad06505e7626a4995d4ecb https://www.encodeproject.org/files/ENCFF291UMT/@@download/ENCFF291UMT.bed.gz GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF784MLU bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPL, ENCFF643CGH 302108506 ENCODE Processing Pipeline e919991e67b6a51429759c9bf96b9636 https://www.encodeproject.org/files/ENCFF784MLU/@@download/ENCFF784MLU.bam GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF803DEO bigWig signal p-value ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF749RRI, ENCFF942FFX 179703258 ENCODE Processing Pipeline 694cca445c802003dc722986e84132bc https://www.encodeproject.org/files/ENCFF803DEO/@@download/ENCFF803DEO.bigWig GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF870OXQ bigWig fold change over control ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF749RRI, ENCFF942FFX 114214304 ENCODE Processing Pipeline 543fa5bceeeecd4cb524226a7acbd461 https://www.encodeproject.org/files/ENCFF870OXQ/@@download/ENCFF870OXQ.bigWig GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF563FUW bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF784MLU, ENCFF942FFX 2126899 ENCODE Processing Pipeline 60ddea27b8875f22a5a79a8107bbc8fc https://www.encodeproject.org/files/ENCFF563FUW/@@download/ENCFF563FUW.bed.gz GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF090VAI bed narrowPeak conservative idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF144QMS, ENCFF291UMT, ENCFF419RSJ, ENCFF563FUW 134294 ENCODE Processing Pipeline ce47e41581a9b76f924ca31202b81e87 https://www.encodeproject.org/files/ENCFF090VAI/@@download/ENCFF090VAI.bed.gz GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF605TOA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF090VAI 306194 ENCODE Processing Pipeline ebd5747a31e043fb19f37b6f9f375174 https://www.encodeproject.org/files/ENCFF605TOA/@@download/ENCFF605TOA.bigBed GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF167WUZ bed narrowPeak optimal idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF144QMS, ENCFF291UMT, ENCFF419RSJ, ENCFF563FUW 149656 ENCODE Processing Pipeline 12397850a41177f618070e26e9e89d28 https://www.encodeproject.org/files/ENCFF167WUZ/@@download/ENCFF167WUZ.bed.gz GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF878NLC bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF291UMT 9959711 ENCODE Processing Pipeline 234c36da9d968325506fd1f644ddf322 https://www.encodeproject.org/files/ENCFF878NLC/@@download/ENCFF878NLC.bigBed GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF978GBP bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPL, ENCFF807MUK 302528563 ENCODE Processing Pipeline 02752d4c5a8dec46e16c4f18ecab1e33 https://www.encodeproject.org/files/ENCFF978GBP/@@download/ENCFF978GBP.bam hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF195OTC bam unfiltered alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPN, ENCFF807MUK 779891636 ENCODE Processing Pipeline e59268cb6cb58250d82324972780bd0b https://www.encodeproject.org/files/ENCFF195OTC/@@download/ENCFF195OTC.bam hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF470BTW bam unfiltered alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPL, ENCFF807MUK 706831141 ENCODE Processing Pipeline ab41ae99ed02ba5ef6551d6045d7c4e9 https://www.encodeproject.org/files/ENCFF470BTW/@@download/ENCFF470BTW.bam hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF994JIB bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPN, ENCFF807MUK 261655045 ENCODE Processing Pipeline 817ca21655b5c7ff92ac16060107d51c https://www.encodeproject.org/files/ENCFF994JIB/@@download/ENCFF994JIB.bam hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF680GIW bigWig signal p-value ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF978GBP 226823738 ENCODE Processing Pipeline ee70a65dc76e8cdc56d3bcf67c31adca https://www.encodeproject.org/files/ENCFF680GIW/@@download/ENCFF680GIW.bigWig hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF616IHP bigWig fold change over control ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF978GBP 129246807 ENCODE Processing Pipeline 5d254ae7552767753982d37f0a27fb59 https://www.encodeproject.org/files/ENCFF616IHP/@@download/ENCFF616IHP.bigWig hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF226ZMG bigWig signal p-value ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF994JIB 179415425 ENCODE Processing Pipeline 8fc26499715ecd258573591001b48d67 https://www.encodeproject.org/files/ENCFF226ZMG/@@download/ENCFF226ZMG.bigWig hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF015QFT bed narrowPeak conservative idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF076VIZ, ENCFF646NDI, ENCFF711IWR 130984 ENCODE Processing Pipeline ce0630e16c9b57d2a0cacf6fa3dd4b21 https://www.encodeproject.org/files/ENCFF015QFT/@@download/ENCFF015QFT.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF893MAK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF417QAJ 328995 ENCODE Processing Pipeline 7af9ad799f2b70198294fa2236c09ba6 https://www.encodeproject.org/files/ENCFF893MAK/@@download/ENCFF893MAK.bigBed hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF083IAS bigWig signal p-value ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF978GBP, ENCFF994JIB 237165287 ENCODE Processing Pipeline 1f9ff7587b690e6380e3d709f4b6930d https://www.encodeproject.org/files/ENCFF083IAS/@@download/ENCFF083IAS.bigWig hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF417QAJ bed narrowPeak optimal idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF076VIZ, ENCFF646NDI, ENCFF711IWR 149199 ENCODE Processing Pipeline 238b9e00469f275659c398777dc0f553 https://www.encodeproject.org/files/ENCFF417QAJ/@@download/ENCFF417QAJ.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF137HFG bigWig fold change over control ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF994JIB 113682859 ENCODE Processing Pipeline 0e9045552b4ffe8570b7b0833fb806cb https://www.encodeproject.org/files/ENCFF137HFG/@@download/ENCFF137HFG.bigWig hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF018IAE bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF711IWR 4391507 ENCODE Processing Pipeline f60f786d9df46198cee71dc3a069e4e8 https://www.encodeproject.org/files/ENCFF018IAE/@@download/ENCFF018IAE.bigBed hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF391YGQ bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF076VIZ 9945066 ENCODE Processing Pipeline b9d2949ffeb6d0d529aace5bb6ed9672 https://www.encodeproject.org/files/ENCFF391YGQ/@@download/ENCFF391YGQ.bigBed hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF697HHX bigWig fold change over control ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF978GBP, ENCFF994JIB 217649619 ENCODE Processing Pipeline dcbd1fa73a6fbc6ca47cd97e6b6d6da1 https://www.encodeproject.org/files/ENCFF697HHX/@@download/ENCFF697HHX.bigWig hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF202JEL bigBed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF646NDI 4111030 ENCODE Processing Pipeline 7dadd6ffc8d9b41aa5b4ed61ba47ac7f https://www.encodeproject.org/files/ENCFF202JEL/@@download/ENCFF202JEL.bigBed hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF711IWR bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF978GBP 2129248 ENCODE Processing Pipeline 6544a6b0ba76e1f622f6e2ca2b5b305d https://www.encodeproject.org/files/ENCFF711IWR/@@download/ENCFF711IWR.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF646NDI bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF994JIB 1968931 ENCODE Processing Pipeline 8fa53b70dea97ab361bb124c40ed951e https://www.encodeproject.org/files/ENCFF646NDI/@@download/ENCFF646NDI.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF076VIZ bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF978GBP, ENCFF994JIB 4186013 ENCODE Processing Pipeline 26d16f09cf95235c9957076f45ddb7ac https://www.encodeproject.org/files/ENCFF076VIZ/@@download/ENCFF076VIZ.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF505NKO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF015QFT 248870 ENCODE Processing Pipeline c0a275b45b6f89f28088d4221a94b574 https://www.encodeproject.org/files/ENCFF505NKO/@@download/ENCFF505NKO.bigBed hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF000OQE bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OQQ 724530820 Richard Myers, HAIB 146b7f702fb35270b5260f91cded141d https://www.encodeproject.org/files/ENCFF000OQE/@@download/ENCFF000OQE.bam hg19 archived low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OQF bigBed broadPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBS 352028 Richard Myers, HAIB 15c080b5159554f3e2de7690299eacfd https://www.encodeproject.org/files/ENCFF000OQF/@@download/ENCFF000OQF.bigBed hg19 archived low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OQG bigBed broadPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBT 388722 Richard Myers, HAIB caadca01941753b70d69955025697866 https://www.encodeproject.org/files/ENCFF000OQG/@@download/ENCFF000OQG.bigBed hg19 archived low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OQH bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OQY 831179403 Richard Myers, HAIB dd6a0abed9a452a88cf9ec8e2753d3dd https://www.encodeproject.org/files/ENCFF000OQH/@@download/ENCFF000OQH.bam hg19 archived low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OQJ bigWig raw signal ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 17091262 Richard Myers, HAIB 6170f7b8f0e9a32fa4477604fd96f879 https://www.encodeproject.org/files/ENCFF000OQJ/@@download/ENCFF000OQJ.bigWig hg19 archived low read length, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OQK bigWig raw signal ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 33732444 Richard Myers, HAIB 10f33cb4f5aa35c83b16843b2d7b4463 https://www.encodeproject.org/files/ENCFF000OQK/@@download/ENCFF000OQK.bigWig hg19 archived low read length, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000OQQ fastq reads ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 877178734 Richard Myers, HAIB 5be5515604f1f5623d3dfbaeba7b57d3 https://www.encodeproject.org/files/ENCFF000OQQ/@@download/ENCFF000OQQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000OQY fastq reads ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1490706784 Richard Myers, HAIB 0e0f71f493bb811d1c8746a601721f70 https://www.encodeproject.org/files/ENCFF000OQY/@@download/ENCFF000OQY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UBS bed broadPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 203718 Richard Myers, HAIB 65c2b2a9bee05f6d2d0fdc02f666262b https://www.encodeproject.org/files/ENCFF001UBS/@@download/ENCFF001UBS.bed.gz hg19 archived low read length, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001UBT bed broadPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 234084 Richard Myers, HAIB 2dc16700f9523d51038a3813d5d463ec https://www.encodeproject.org/files/ENCFF001UBT/@@download/ENCFF001UBT.bed.gz hg19 archived low read length, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CJB bed narrowPeak optimal idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 272383 ENCODE Consortium Analysis Working Group fd8f0f6b21e19fa1c186d9de059c1d27 https://www.encodeproject.org/files/ENCFF002CJB/@@download/ENCFF002CJB.bed.gz hg19 archived low read length, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF265KUU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJB 609092 ENCODE Consortium 19ce24a7c1d943c729499f3ba758d965 https://www.encodeproject.org/files/ENCFF265KUU/@@download/ENCFF265KUU.bigBed hg19 archived low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF077GSV bam unfiltered alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQQ, ENCFF643CGH 1063158078 ENCODE Processing Pipeline e5e0178a0bdd0b0ee768c0d65ddcfa77 https://www.encodeproject.org/files/ENCFF077GSV/@@download/ENCFF077GSV.bam GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF696GNV bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQQ, ENCFF643CGH 486295506 ENCODE Processing Pipeline d206b3519215c0a17864ec520dffb719 https://www.encodeproject.org/files/ENCFF696GNV/@@download/ENCFF696GNV.bam GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF499LPH bam unfiltered alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQY, ENCFF643CGH 1893606558 ENCODE Processing Pipeline 484e4c991f8329112d647b427c33dc78 https://www.encodeproject.org/files/ENCFF499LPH/@@download/ENCFF499LPH.bam GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF312WAT bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQY, ENCFF643CGH 967402004 ENCODE Processing Pipeline e4dd2b93c6736a3531452e41212be774 https://www.encodeproject.org/files/ENCFF312WAT/@@download/ENCFF312WAT.bam GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF687USK bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQQ, ENCFF807MUK 486550060 ENCODE Processing Pipeline 10281da4c32c6e3735e28af0892f1c97 https://www.encodeproject.org/files/ENCFF687USK/@@download/ENCFF687USK.bam hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF030BIT bam unfiltered alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQQ, ENCFF807MUK 1060472091 ENCODE Processing Pipeline 4e500d8965896a94dfc00c371b2b505a https://www.encodeproject.org/files/ENCFF030BIT/@@download/ENCFF030BIT.bam hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF238DIG bam unfiltered alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQY, ENCFF807MUK 1886845668 ENCODE Processing Pipeline 90891b56d965de5b0120a46afb0de4fc https://www.encodeproject.org/files/ENCFF238DIG/@@download/ENCFF238DIG.bam hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF945BSS bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQY, ENCFF807MUK 967927877 ENCODE Processing Pipeline ef80bd1a05a9a95a49b27070fa22f3af https://www.encodeproject.org/files/ENCFF945BSS/@@download/ENCFF945BSS.bam hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF181CFO bigWig signal p-value ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF687USK 415710430 ENCODE Processing Pipeline 83e8afbbc7c4375ac0d4043d5d966d97 https://www.encodeproject.org/files/ENCFF181CFO/@@download/ENCFF181CFO.bigWig hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF013QEP bigWig signal p-value ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF945BSS 465556621 ENCODE Processing Pipeline 26baa9df7e6bba5a5b04cbe6ab2105de https://www.encodeproject.org/files/ENCFF013QEP/@@download/ENCFF013QEP.bigWig hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF177YUZ bigWig signal p-value ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF687USK, ENCFF945BSS 550270337 ENCODE Processing Pipeline 47a93bfa513b2ab3d179e5f15c253670 https://www.encodeproject.org/files/ENCFF177YUZ/@@download/ENCFF177YUZ.bigWig hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF784OAK bigWig fold change over control ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF945BSS 423302789 ENCODE Processing Pipeline 7537673f6a52515d1a1eb36e4b66520d https://www.encodeproject.org/files/ENCFF784OAK/@@download/ENCFF784OAK.bigWig hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF719OMW bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF945BSS 4757155 ENCODE Processing Pipeline b51e7e533d188036b29c628c6add1273 https://www.encodeproject.org/files/ENCFF719OMW/@@download/ENCFF719OMW.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF709QBZ bigBed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF935KIG 7137784 ENCODE Processing Pipeline 1e98223cd88dd6deeb7f4dcaa6c3ab6d https://www.encodeproject.org/files/ENCFF709QBZ/@@download/ENCFF709QBZ.bigBed hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF079OMB bigBed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF719OMW 11172763 ENCODE Processing Pipeline 17ef8675c6d5b55339e5ba1278286b77 https://www.encodeproject.org/files/ENCFF079OMB/@@download/ENCFF079OMB.bigBed hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF471LQJ bigWig fold change over control ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF687USK 221067640 ENCODE Processing Pipeline 32127c8fabf09d17afb4f29e588e658b https://www.encodeproject.org/files/ENCFF471LQJ/@@download/ENCFF471LQJ.bigWig hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF343IHX bigBed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF116MTZ 11280686 ENCODE Processing Pipeline da4cf18486114e33d3dcbd33e18d1259 https://www.encodeproject.org/files/ENCFF343IHX/@@download/ENCFF343IHX.bigBed hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF403AAG bed narrowPeak conservative idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF116MTZ, ENCFF719OMW, ENCFF935KIG 242921 ENCODE Processing Pipeline d4e5d7a3b52f4bb25bdf4e56517071ea https://www.encodeproject.org/files/ENCFF403AAG/@@download/ENCFF403AAG.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF829IMO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF453HPD 483617 ENCODE Processing Pipeline 94f55b2cd2f97e107680f86e4adb6bbb https://www.encodeproject.org/files/ENCFF829IMO/@@download/ENCFF829IMO.bigBed hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF507XFK bigWig fold change over control ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF687USK, ENCFF945BSS 553808134 ENCODE Processing Pipeline 8e01093b9a0e950aadd4f79389f792b1 https://www.encodeproject.org/files/ENCFF507XFK/@@download/ENCFF507XFK.bigWig hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF935KIG bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF687USK 3407756 ENCODE Processing Pipeline 7b58f1bde9908c70d4575c07b2ce1c31 https://www.encodeproject.org/files/ENCFF935KIG/@@download/ENCFF935KIG.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF674UCZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF403AAG 438897 ENCODE Processing Pipeline 6ba04bfac4c30d7b5c1f01cd4499214d https://www.encodeproject.org/files/ENCFF674UCZ/@@download/ENCFF674UCZ.bigBed hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF041JYX bigWig signal p-value ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF312WAT, ENCFF696GNV, ENCFF948LKH 547791721 ENCODE Processing Pipeline a796b95feef5b47fd5854624fd81f89c https://www.encodeproject.org/files/ENCFF041JYX/@@download/ENCFF041JYX.bigWig GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF116MTZ bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF687USK, ENCFF945BSS 4932875 ENCODE Processing Pipeline b411b07bef0274011c869e7b9d6f4c40 https://www.encodeproject.org/files/ENCFF116MTZ/@@download/ENCFF116MTZ.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF453HPD bed narrowPeak optimal idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF116MTZ, ENCFF719OMW, ENCFF935KIG 278409 ENCODE Processing Pipeline 07f8d6d12ffe4b5d81a0bfda84ea298d https://www.encodeproject.org/files/ENCFF453HPD/@@download/ENCFF453HPD.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF079JVI bigWig signal p-value ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF696GNV, ENCFF948LKH 362872066 ENCODE Processing Pipeline 7588e77cc7db5e5314d5f83a3a9d68f8 https://www.encodeproject.org/files/ENCFF079JVI/@@download/ENCFF079JVI.bigWig GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF533SBV bigWig fold change over control ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF312WAT, ENCFF948LKH 423683420 ENCODE Processing Pipeline 68aac309cc2f9ba4baea9cac8704438f https://www.encodeproject.org/files/ENCFF533SBV/@@download/ENCFF533SBV.bigWig GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF052RUP bigWig signal p-value ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF312WAT, ENCFF948LKH 490504822 ENCODE Processing Pipeline 30e51c3a067d67c110cfc848e5109af1 https://www.encodeproject.org/files/ENCFF052RUP/@@download/ENCFF052RUP.bigWig GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF648WCI bigWig fold change over control ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF312WAT, ENCFF696GNV, ENCFF948LKH 552467528 ENCODE Processing Pipeline 47df9572f951d054b33972eb4e3864f3 https://www.encodeproject.org/files/ENCFF648WCI/@@download/ENCFF648WCI.bigWig GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF833NSS bigWig fold change over control ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF696GNV, ENCFF948LKH 220753799 ENCODE Processing Pipeline 97334d3a125b7ab183a43d9aeecb9c21 https://www.encodeproject.org/files/ENCFF833NSS/@@download/ENCFF833NSS.bigWig GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF115EHO bigBed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF876VJF 7138811 ENCODE Processing Pipeline 2a9531f444600940c765e5a532ac7d52 https://www.encodeproject.org/files/ENCFF115EHO/@@download/ENCFF115EHO.bigBed GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF672TPZ bigBed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF147SHY 11179617 ENCODE Processing Pipeline 4dcea489bbd03069cc99264d48fe3e2c https://www.encodeproject.org/files/ENCFF672TPZ/@@download/ENCFF672TPZ.bigBed GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF147SHY bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF312WAT, ENCFF948LKH 4756156 ENCODE Processing Pipeline 5f726a422daeef97956cccd58a3236de https://www.encodeproject.org/files/ENCFF147SHY/@@download/ENCFF147SHY.bed.gz GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF876VJF bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF696GNV, ENCFF948LKH 3400221 ENCODE Processing Pipeline 0ed143eb8b5fd8d3c570c6c65d3e94e1 https://www.encodeproject.org/files/ENCFF876VJF/@@download/ENCFF876VJF.bed.gz GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF238RWM bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF312WAT, ENCFF696GNV, ENCFF948LKH 4939003 ENCODE Processing Pipeline 8b9380257bdd6f17d0b02854fe876145 https://www.encodeproject.org/files/ENCFF238RWM/@@download/ENCFF238RWM.bed.gz GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF690IGM bed narrowPeak conservative idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF147SHY, ENCFF238RWM, ENCFF419RSJ, ENCFF876VJF 244589 ENCODE Processing Pipeline 799b50271b9b81eeb4818ca865efc167 https://www.encodeproject.org/files/ENCFF690IGM/@@download/ENCFF690IGM.bed.gz GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF471AXO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF690IGM 441707 ENCODE Processing Pipeline cf79da6290ce765222181af517e6fb65 https://www.encodeproject.org/files/ENCFF471AXO/@@download/ENCFF471AXO.bigBed GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF272RWB bigBed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238RWM 11293100 ENCODE Processing Pipeline af20c801a4bf8a9b91f3d2c298df50a2 https://www.encodeproject.org/files/ENCFF272RWB/@@download/ENCFF272RWB.bigBed GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF403CAJ bed narrowPeak optimal idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF147SHY, ENCFF238RWM, ENCFF419RSJ, ENCFF876VJF 280001 ENCODE Processing Pipeline 9f84b13c5eb67b5b9b2abc6d136f1972 https://www.encodeproject.org/files/ENCFF403CAJ/@@download/ENCFF403CAJ.bed.gz GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF496HZT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF403CAJ 486189 ENCODE Processing Pipeline b8ccb8e9ef7aa5f5a4c76a0628f21891 https://www.encodeproject.org/files/ENCFF496HZT/@@download/ENCFF496HZT.bigBed GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PKC bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PKK 704067144 Richard Myers, HAIB 6225409dd03c4ef3d95a7b226b7715b2 https://www.encodeproject.org/files/ENCFF000PKC/@@download/ENCFF000PKC.bam hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000PKD bigBed broadPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UGK 618193 Richard Myers, HAIB 639fc91517998b41b7fff78525c38f22 https://www.encodeproject.org/files/ENCFF000PKD/@@download/ENCFF000PKD.bigBed hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000PKE bigBed broadPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UGL 956685 Richard Myers, HAIB 0cdbc15ce5c718716b0570e7461bfe56 https://www.encodeproject.org/files/ENCFF000PKE/@@download/ENCFF000PKE.bigBed hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000PKF bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PKR 1320498007 Richard Myers, HAIB 18926390bda0129d1e4fdeeb4218b5b4 https://www.encodeproject.org/files/ENCFF000PKF/@@download/ENCFF000PKF.bam hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000PKG bigWig raw signal ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 20447827 Richard Myers, HAIB 7d2328b2925093f5e8061e5f05f42cf2 https://www.encodeproject.org/files/ENCFF000PKG/@@download/ENCFF000PKG.bigWig hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PKI bigWig raw signal ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 43157002 Richard Myers, HAIB 84d76376a3ce376eea4f3cfd24ea51ee https://www.encodeproject.org/files/ENCFF000PKI/@@download/ENCFF000PKI.bigWig hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000PKK fastq reads ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 870198613 Richard Myers, HAIB 12857dfa153ddd1f97a56c8e661247cc https://www.encodeproject.org/files/ENCFF000PKK/@@download/ENCFF000PKK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF000PKR fastq reads ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1518600887 Richard Myers, HAIB 828fc0b304ee33c3124b0373eff7477f https://www.encodeproject.org/files/ENCFF000PKR/@@download/ENCFF000PKR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POC/ released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF001UGK bed broadPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 1 352072 Richard Myers, HAIB 03f4a310f5c3179d8830b85a237f8853 https://www.encodeproject.org/files/ENCFF001UGK/@@download/ENCFF001UGK.bed.gz hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF001UGL bed broadPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 1 482239 Richard Myers, HAIB 69710c7d6ed5bd46a795852aa6d562ba https://www.encodeproject.org/files/ENCFF001UGL/@@download/ENCFF001UGL.bed.gz hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CKP bed narrowPeak optimal idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 417508 ENCODE Consortium Analysis Working Group 3f5847a857c4581b0a6eee63d611118d https://www.encodeproject.org/files/ENCFF002CKP/@@download/ENCFF002CKP.bed.gz hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from missing control alignments ENCFF999AFA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKP 931565 ENCODE Consortium ff2ac51ae792fcd94c0055bfd239efd7 https://www.encodeproject.org/files/ENCFF999AFA/@@download/ENCFF999AFA.bigBed hg19 archived control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF943YUP bam unfiltered alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKK, ENCFF643CGH 1089538622 ENCODE Processing Pipeline 548273be223e4bb8f9f60b3d70eb0f93 https://www.encodeproject.org/files/ENCFF943YUP/@@download/ENCFF943YUP.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF521KDX bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKK, ENCFF643CGH 535567390 ENCODE Processing Pipeline 61047e90a3f93a875c43d21e51e3027c https://www.encodeproject.org/files/ENCFF521KDX/@@download/ENCFF521KDX.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF232TLZ bam unfiltered alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKR, ENCFF643CGH 1925472528 ENCODE Processing Pipeline b2c225dd24a5c0d4ce990b0371345266 https://www.encodeproject.org/files/ENCFF232TLZ/@@download/ENCFF232TLZ.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF318WWT bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKR, ENCFF643CGH 970203983 ENCODE Processing Pipeline 0e5f5b6cca88a0f33230df9b1f0f4912 https://www.encodeproject.org/files/ENCFF318WWT/@@download/ENCFF318WWT.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF575CSB bam unfiltered alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKK, ENCFF807MUK 1086898296 ENCODE Processing Pipeline 1dfd76be56f8265e08ce983b1f6eaa21 https://www.encodeproject.org/files/ENCFF575CSB/@@download/ENCFF575CSB.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF776GGM bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKK, ENCFF807MUK 535962155 ENCODE Processing Pipeline 9ecdc54b421aae00139956fc8db4e18e https://www.encodeproject.org/files/ENCFF776GGM/@@download/ENCFF776GGM.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF058QGD bam unfiltered alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKR, ENCFF807MUK 1919584230 ENCODE Processing Pipeline 5c143aa1a45c8e77ba6040adec7c6cc2 https://www.encodeproject.org/files/ENCFF058QGD/@@download/ENCFF058QGD.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF214JZV bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKR, ENCFF807MUK 970685215 ENCODE Processing Pipeline 5f5d4a5167ce38457f6afcc21ac172b1 https://www.encodeproject.org/files/ENCFF214JZV/@@download/ENCFF214JZV.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF403CKU bigWig signal p-value ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WWT, ENCFF521KDX 342717685 ENCODE Processing Pipeline 5c5897270ac339775ef36349c1b427ab https://www.encodeproject.org/files/ENCFF403CKU/@@download/ENCFF403CKU.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF537BRA bigWig signal p-value ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF521KDX 304605309 ENCODE Processing Pipeline 3ad8aaaf17f1aedb02d1607f2f265d41 https://www.encodeproject.org/files/ENCFF537BRA/@@download/ENCFF537BRA.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF219MKG bigWig signal p-value ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WWT 377725889 ENCODE Processing Pipeline a82aeb285f3f82087ec349daa79116a7 https://www.encodeproject.org/files/ENCFF219MKG/@@download/ENCFF219MKG.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF895YEO bigWig fold change over control ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WWT 354050492 ENCODE Processing Pipeline 148f37dd87cad5de6de0e24950abd629 https://www.encodeproject.org/files/ENCFF895YEO/@@download/ENCFF895YEO.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF009FVW bigWig fold change over control ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WWT, ENCFF521KDX 490000399 ENCODE Processing Pipeline 277cfa4f186e46ae69467e5891e269b9 https://www.encodeproject.org/files/ENCFF009FVW/@@download/ENCFF009FVW.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF402COT bigWig fold change over control ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF521KDX 208995649 ENCODE Processing Pipeline a32474a8e90334963dcb3419b0f2f32a https://www.encodeproject.org/files/ENCFF402COT/@@download/ENCFF402COT.bigWig GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF684IDW bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WWT, ENCFF521KDX 5602251 ENCODE Processing Pipeline 0f17af686fe268b0555a9028a65dd35c https://www.encodeproject.org/files/ENCFF684IDW/@@download/ENCFF684IDW.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF596AJD bigBed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF308OYP 10086959 ENCODE Processing Pipeline b3caeef20f58144d8c8c7440837072af https://www.encodeproject.org/files/ENCFF596AJD/@@download/ENCFF596AJD.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF413IZF bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WWT 4849263 ENCODE Processing Pipeline 4d82c166d142633d4909666a8716015e https://www.encodeproject.org/files/ENCFF413IZF/@@download/ENCFF413IZF.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF739DWK bigBed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF413IZF 10569321 ENCODE Processing Pipeline 6c528c81787ccf4067aa3a6621fdfb03 https://www.encodeproject.org/files/ENCFF739DWK/@@download/ENCFF739DWK.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF308OYP bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF521KDX 4434650 ENCODE Processing Pipeline 4208409a40550f1cf71c2b9d97b1e87c https://www.encodeproject.org/files/ENCFF308OYP/@@download/ENCFF308OYP.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF528STQ bigBed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF684IDW 13311507 ENCODE Processing Pipeline c4c86a1fd4ac23d9a5f4e06d8c55f2da https://www.encodeproject.org/files/ENCFF528STQ/@@download/ENCFF528STQ.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF539GRW bed narrowPeak optimal idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF308OYP, ENCFF413IZF, ENCFF419RSJ, ENCFF684IDW 483317 ENCODE Processing Pipeline b11ef31a67b9c676568ec98b18abd22c https://www.encodeproject.org/files/ENCFF539GRW/@@download/ENCFF539GRW.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF768ZRJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF483RLR 925586 ENCODE Processing Pipeline 74e48f6c87d80d8de6608f980ffe2cd7 https://www.encodeproject.org/files/ENCFF768ZRJ/@@download/ENCFF768ZRJ.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF483RLR bed narrowPeak conservative idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF308OYP, ENCFF413IZF, ENCFF419RSJ, ENCFF684IDW 451822 ENCODE Processing Pipeline 6309a92d83f3f613955bf6a72802147a https://www.encodeproject.org/files/ENCFF483RLR/@@download/ENCFF483RLR.bed.gz GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF326BMU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF539GRW 977148 ENCODE Processing Pipeline c8600999d5701beb88cda79d9a41cdfe https://www.encodeproject.org/files/ENCFF326BMU/@@download/ENCFF326BMU.bigBed GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF175JWK bigWig signal p-value ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF776GGM 332322016 ENCODE Processing Pipeline 437d981d5d1bfc76199a233a82d8b157 https://www.encodeproject.org/files/ENCFF175JWK/@@download/ENCFF175JWK.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF487YGR bigWig fold change over control ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF776GGM 210237703 ENCODE Processing Pipeline b2693c814bd93f8b172d456f8b4b4205 https://www.encodeproject.org/files/ENCFF487YGR/@@download/ENCFF487YGR.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF322HOR bigWig signal p-value ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF214JZV, ENCFF334MOO 364889562 ENCODE Processing Pipeline 9bea4e73985e3a75d1b33eb70f5fc6dd https://www.encodeproject.org/files/ENCFF322HOR/@@download/ENCFF322HOR.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF653QPS bigWig signal p-value ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF214JZV, ENCFF334MOO, ENCFF776GGM 345119624 ENCODE Processing Pipeline d9b142ccef202d3e1e3a7581572a6380 https://www.encodeproject.org/files/ENCFF653QPS/@@download/ENCFF653QPS.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF845GWW bigWig fold change over control ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF214JZV, ENCFF334MOO 348950342 ENCODE Processing Pipeline e8132c62d785be2290defa46856eb27e https://www.encodeproject.org/files/ENCFF845GWW/@@download/ENCFF845GWW.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF819OYG bigWig fold change over control ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF214JZV, ENCFF334MOO, ENCFF776GGM 490494275 ENCODE Processing Pipeline 5bb82c6e0c324dc4a1c460483e771a58 https://www.encodeproject.org/files/ENCFF819OYG/@@download/ENCFF819OYG.bigWig hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF323HOG bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF776GGM 4434879 ENCODE Processing Pipeline 65a64cbb6c73d2ce7a1dec80ebbfa186 https://www.encodeproject.org/files/ENCFF323HOG/@@download/ENCFF323HOG.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF466HNP bigBed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF323HOG 10091898 ENCODE Processing Pipeline a321daa380a4b4182a8cc316024cc8d0 https://www.encodeproject.org/files/ENCFF466HNP/@@download/ENCFF466HNP.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF953YCY bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF214JZV, ENCFF334MOO, ENCFF776GGM 5592708 ENCODE Processing Pipeline ea667a66d4f7990f0f32ba9cd7302816 https://www.encodeproject.org/files/ENCFF953YCY/@@download/ENCFF953YCY.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF265CMT bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF214JZV, ENCFF334MOO 4860955 ENCODE Processing Pipeline 8f9f5dd16287956faa16cb47968de548 https://www.encodeproject.org/files/ENCFF265CMT/@@download/ENCFF265CMT.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF938YQW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF971UIP 924330 ENCODE Processing Pipeline 22458a2a1b0eade72a8ae0d87dcaad08 https://www.encodeproject.org/files/ENCFF938YQW/@@download/ENCFF938YQW.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF320MYM bigBed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF265CMT 10579359 ENCODE Processing Pipeline 484a0752d0ea0f40c6046759303a1f64 https://www.encodeproject.org/files/ENCFF320MYM/@@download/ENCFF320MYM.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF983CJI bigBed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF953YCY 13247255 ENCODE Processing Pipeline d2a95e9b46d53f0c4837a03a325faabc https://www.encodeproject.org/files/ENCFF983CJI/@@download/ENCFF983CJI.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF886LBC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF721HUX 970091 ENCODE Processing Pipeline 58b8187333c256e9fadf78caf2779a43 https://www.encodeproject.org/files/ENCFF886LBC/@@download/ENCFF886LBC.bigBed hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF971UIP bed narrowPeak conservative idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF265CMT, ENCFF323HOG, ENCFF953YCY 453468 ENCODE Processing Pipeline e31bf9764e4ccaa4a6762e78625af3c2 https://www.encodeproject.org/files/ENCFF971UIP/@@download/ENCFF971UIP.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF721HUX bed narrowPeak optimal idr thresholded peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF265CMT, ENCFF323HOG, ENCFF953YCY 480792 ENCODE Processing Pipeline 52a019c14919da9374985ab812f42e9d https://www.encodeproject.org/files/ENCFF721HUX/@@download/ENCFF721HUX.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF901YTM fastq reads ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF427OPF 3023123656 Michael Snyder, Stanford fc768c0fbd42ec823ecc27a90983bd57 SRA:SRR6214100 https://www.encodeproject.org/files/ENCFF901YTM/@@download/ENCFF901YTM.fastq.gz Illumina HiSeq 4000 /files/ENCFF540KKH/ released antibody characterized with exemption ENCFF427OPF fastq reads ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF901YTM 3202128559 Michael Snyder, Stanford 0c808382ac26d7a8d3860652b6f1ea3c SRA:SRR6214100 https://www.encodeproject.org/files/ENCFF427OPF/@@download/ENCFF427OPF.fastq.gz Illumina HiSeq 4000 /files/ENCFF357AAO/ released antibody characterized with exemption ENCFF177RBP bam unfiltered alignments ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF427OPF, ENCFF643CGH, ENCFF901YTM 6023566327 ENCODE Processing Pipeline 5047072585ecc23f0e73dcaae05f5f7c https://www.encodeproject.org/files/ENCFF177RBP/@@download/ENCFF177RBP.bam GRCh38 released antibody characterized with exemption ENCFF814WUR bam unfiltered alignments ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF427OPF, ENCFF807MUK, ENCFF901YTM 6014953265 ENCODE Processing Pipeline 31d0f9ece58b7c8cc472ec8726851e88 https://www.encodeproject.org/files/ENCFF814WUR/@@download/ENCFF814WUR.bam hg19 released antibody characterized with exemption ENCFF288DHW bam alignments ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF427OPF, ENCFF807MUK, ENCFF901YTM 4881304486 ENCODE Processing Pipeline d6febe8bd514f23444cabef1279f0498 https://www.encodeproject.org/files/ENCFF288DHW/@@download/ENCFF288DHW.bam hg19 released antibody characterized with exemption ENCFF957DAV bam alignments ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF427OPF, ENCFF643CGH, ENCFF901YTM 4887938526 ENCODE Processing Pipeline aecf59e576cbea0645c008fe55a7a348 https://www.encodeproject.org/files/ENCFF957DAV/@@download/ENCFF957DAV.bam GRCh38 released antibody characterized with exemption ENCFF214VLF bigWig signal p-value ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF288DHW, ENCFF894GZN 1303950339 ENCODE Processing Pipeline c1bd9da5d4eafbcc9ff14658be48241c https://www.encodeproject.org/files/ENCFF214VLF/@@download/ENCFF214VLF.bigWig hg19 released antibody characterized with exemption ENCFF661YIN bigWig fold change over control ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF288DHW, ENCFF894GZN 1451098329 ENCODE Processing Pipeline 7f2e064958c0f0f5a3bc82403aa17685 https://www.encodeproject.org/files/ENCFF661YIN/@@download/ENCFF661YIN.bigWig hg19 released antibody characterized with exemption ENCFF938NIP bed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF288DHW, ENCFF894GZN 6788148 ENCODE Processing Pipeline 881e4ad73aa8cb3ea20276d0f000d439 https://www.encodeproject.org/files/ENCFF938NIP/@@download/ENCFF938NIP.bed.gz hg19 released antibody characterized with exemption ENCFF745NPN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF938NIP 632658 ENCODE Processing Pipeline 1e585522f7ce87aeaa678e4b75bb8aa3 https://www.encodeproject.org/files/ENCFF745NPN/@@download/ENCFF745NPN.bed.gz hg19 released antibody characterized with exemption ENCFF609IND bigBed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF938NIP 13886322 ENCODE Processing Pipeline 89302a87eeb82c58d0717fde59276755 https://www.encodeproject.org/files/ENCFF609IND/@@download/ENCFF609IND.bigBed hg19 released antibody characterized with exemption ENCFF028PUQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF745NPN 1110189 ENCODE Processing Pipeline 3fe3ead64958b4fc3234911a90569fe5 https://www.encodeproject.org/files/ENCFF028PUQ/@@download/ENCFF028PUQ.bigBed hg19 released antibody characterized with exemption ENCFF999QJJ bigWig signal p-value ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF219XWI, ENCFF957DAV 1304346717 ENCODE Processing Pipeline fe1c7109d272eedfc5d6ceaf40b1f38e https://www.encodeproject.org/files/ENCFF999QJJ/@@download/ENCFF999QJJ.bigWig GRCh38 released antibody characterized with exemption ENCFF254GUY bigBed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF846IMW 13940850 ENCODE Processing Pipeline c58de1f9946241ffdbfa1af36c52b6b2 https://www.encodeproject.org/files/ENCFF254GUY/@@download/ENCFF254GUY.bigBed GRCh38 released antibody characterized with exemption ENCFF344WUU bigWig fold change over control ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF219XWI, ENCFF957DAV 1450061164 ENCODE Processing Pipeline 4a550e316bf88d76d2adb6a459e36727 https://www.encodeproject.org/files/ENCFF344WUU/@@download/ENCFF344WUU.bigWig GRCh38 released antibody characterized with exemption ENCFF846IMW bed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF219XWI, ENCFF957DAV 6823040 ENCODE Processing Pipeline b4cf7701a13ea21fd6cc0b91d6d8f4d5 https://www.encodeproject.org/files/ENCFF846IMW/@@download/ENCFF846IMW.bed.gz GRCh38 released antibody characterized with exemption ENCFF869YGK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF846IMW 635377 ENCODE Processing Pipeline 507d11142275c2f66db371b8d56907c5 https://www.encodeproject.org/files/ENCFF869YGK/@@download/ENCFF869YGK.bed.gz GRCh38 released antibody characterized with exemption ENCFF536WDF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF869YGK 1119646 ENCODE Processing Pipeline 4f932f4fe29eda8bc4456e0511fef35b https://www.encodeproject.org/files/ENCFF536WDF/@@download/ENCFF536WDF.bigBed GRCh38 released antibody characterized with exemption ENCFF000OXR bigBed broadPeak peaks ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDK 70964 Richard Myers, HAIB c79b023df1ebff86c7c326a64b603ab9 https://www.encodeproject.org/files/ENCFF000OXR/@@download/ENCFF000OXR.bigBed hg19 released biological replicates with identical biosample ENCFF000OXS bigBed broadPeak peaks ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDL 74808 Richard Myers, HAIB 6c3c54d90bacdaa9f7e92fb772e83cee https://www.encodeproject.org/files/ENCFF000OXS/@@download/ENCFF000OXS.bigBed hg19 released biological replicates with identical biosample ENCFF000OXU bam alignments ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYD 1380589223 Richard Myers, HAIB 7a394fd2b38ecad5e7c4563d1d8df5ca https://www.encodeproject.org/files/ENCFF000OXU/@@download/ENCFF000OXU.bam hg19 released biological replicates with identical biosample ENCFF000OXV bigWig raw signal ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 1 1 143183397 Richard Myers, HAIB bf61dfcc9bf9f7ce0c91265046218613 https://www.encodeproject.org/files/ENCFF000OXV/@@download/ENCFF000OXV.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OXW bigWig raw signal ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 2 1 241854375 Richard Myers, HAIB 75f348079679d881856a1a695c9b3295 https://www.encodeproject.org/files/ENCFF000OXW/@@download/ENCFF000OXW.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OXX bam alignments ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OYI 1903827214 Richard Myers, HAIB 3b009a6aff0cefc12974864418e46a6d https://www.encodeproject.org/files/ENCFF000OXX/@@download/ENCFF000OXX.bam hg19 released biological replicates with identical biosample ENCFF000OYD fastq reads ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1410324258 Richard Myers, HAIB 8a1fa708d6a22641672869790150004f https://www.encodeproject.org/files/ENCFF000OYD/@@download/ENCFF000OYD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000OYI fastq reads ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1918374752 Richard Myers, HAIB 8e371b580446a7335f438bfca5cc3815 https://www.encodeproject.org/files/ENCFF000OYI/@@download/ENCFF000OYI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UDK bed broadPeak peaks ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 1 1 18065 Richard Myers, HAIB 596b750ffb29d77d3271245c1a9bd6a8 https://www.encodeproject.org/files/ENCFF001UDK/@@download/ENCFF001UDK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UDL bed broadPeak peaks ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 2 1 20130 Richard Myers, HAIB 51f47acbc86d0664c45078f81dd7ebd0 https://www.encodeproject.org/files/ENCFF001UDL/@@download/ENCFF001UDL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF141YYX fastq reads ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF813TWG 3649156536 Michael Snyder, Stanford 4ee0a4e16ce0b5b0ef5a0bcf1e3a0ff4 SRA:SRR6214366 https://www.encodeproject.org/files/ENCFF141YYX/@@download/ENCFF141YYX.fastq.gz Illumina HiSeq 4000 /files/ENCFF993FKF/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF813TWG fastq reads ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF141YYX 3093949776 Michael Snyder, Stanford 87ae279643cdbec4fa9b00977faed01e SRA:SRR6214366 https://www.encodeproject.org/files/ENCFF813TWG/@@download/ENCFF813TWG.fastq.gz Illumina HiSeq 4000 /files/ENCFF398FSP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF374CBF bam unfiltered alignments ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF141YYX, ENCFF643CGH, ENCFF813TWG 6023267851 ENCODE Processing Pipeline 1d7c6797e49279a89d85a15b88056fee https://www.encodeproject.org/files/ENCFF374CBF/@@download/ENCFF374CBF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF220MDN bam alignments ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF141YYX, ENCFF643CGH, ENCFF813TWG 3721892863 ENCODE Processing Pipeline cbca7e0306d2ec031e3b1c7216869d75 https://www.encodeproject.org/files/ENCFF220MDN/@@download/ENCFF220MDN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF377VTI bam unfiltered alignments ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF141YYX, ENCFF807MUK, ENCFF813TWG 6021420585 ENCODE Processing Pipeline 299f3e42198cf3e38c1ad8bdae695cf8 https://www.encodeproject.org/files/ENCFF377VTI/@@download/ENCFF377VTI.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF654TGQ bam alignments ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF141YYX, ENCFF807MUK, ENCFF813TWG 3717513371 ENCODE Processing Pipeline 8810850e3c678dbafb0a0c1a69fa39b4 https://www.encodeproject.org/files/ENCFF654TGQ/@@download/ENCFF654TGQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF158JDH bigWig fold change over control ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF240WVD, ENCFF654TGQ 1235802991 ENCODE Processing Pipeline 5954b056ad423d93fc5c869899047d55 https://www.encodeproject.org/files/ENCFF158JDH/@@download/ENCFF158JDH.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF974EEW bigWig signal p-value ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF240WVD, ENCFF654TGQ 1280660440 ENCODE Processing Pipeline face8f5d540da689b81d7390f299d41b https://www.encodeproject.org/files/ENCFF974EEW/@@download/ENCFF974EEW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF476MXK bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF958QPG 147821 ENCODE Processing Pipeline 0cbb8ccac2e5b12251cb98fe7b0d9fd7 https://www.encodeproject.org/files/ENCFF476MXK/@@download/ENCFF476MXK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF223LDV bigBed narrowPeak peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF958QPG 11537630 ENCODE Processing Pipeline 84505f0c14ca8bfb0802b98771c6bd3e https://www.encodeproject.org/files/ENCFF223LDV/@@download/ENCFF223LDV.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF958QPG bed narrowPeak peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF240WVD, ENCFF654TGQ 5567878 ENCODE Processing Pipeline 9770dc4c666f74cc83a05b3f0cfdc872 https://www.encodeproject.org/files/ENCFF958QPG/@@download/ENCFF958QPG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF506AKW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF476MXK 326431 ENCODE Processing Pipeline 0bca5bb703cf161cf33911a6e14f83b3 https://www.encodeproject.org/files/ENCFF506AKW/@@download/ENCFF506AKW.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF487XCN bigWig signal p-value ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF220MDN, ENCFF572VZL 998959871 ENCODE Processing Pipeline d1e007b04dd9063011b4f97be4386176 https://www.encodeproject.org/files/ENCFF487XCN/@@download/ENCFF487XCN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728SVI bed narrowPeak peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF220MDN, ENCFF572VZL 5562565 ENCODE Processing Pipeline b9689ac187391a12663fd7a4263fb7bd https://www.encodeproject.org/files/ENCFF728SVI/@@download/ENCFF728SVI.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF720RWF bigWig fold change over control ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF220MDN, ENCFF572VZL 1239563339 ENCODE Processing Pipeline 7d2ff6506fac045479c98db98060709c https://www.encodeproject.org/files/ENCFF720RWF/@@download/ENCFF720RWF.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF542QLV bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF728SVI 148069 ENCODE Processing Pipeline 652e31d65fd8a33ffed8d0c232ede2af https://www.encodeproject.org/files/ENCFF542QLV/@@download/ENCFF542QLV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF159OPC bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF542QLV 328764 ENCODE Processing Pipeline 9cd23d8fd85fb7cef617ae695499ba4b https://www.encodeproject.org/files/ENCFF159OPC/@@download/ENCFF159OPC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF210FPA bigBed narrowPeak peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF728SVI 11550046 ENCODE Processing Pipeline 146b8b001176a8421bb46927d87f914e https://www.encodeproject.org/files/ENCFF210FPA/@@download/ENCFF210FPA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000VPA bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 1 ENCFF000VPD 1265625921 Michael Snyder, Stanford 2dcb86ddd8019efcdbd6b7e88cc76dcf https://www.encodeproject.org/files/ENCFF000VPA/@@download/ENCFF000VPA.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VPC bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001VDP 1325053 Michael Snyder, Stanford a79cc933856877392def146dfde4c794 https://www.encodeproject.org/files/ENCFF000VPC/@@download/ENCFF000VPC.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VPD fastq reads ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1032676148 Michael Snyder, Stanford b256f3527d94ad0ae2302e44b2ddae1d https://www.encodeproject.org/files/ENCFF000VPD/@@download/ENCFF000VPD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPI/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VPF fastq reads ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 931121305 Michael Snyder, Stanford 50088a7e71ff6a5d1b117b533950039f https://www.encodeproject.org/files/ENCFF000VPF/@@download/ENCFF000VPF.fastq.gz Illumina Genome Analyzer /files/ENCFF000VPK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VPH bigWig signal ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF000VPA, ENCFF000VPO 623721328 Michael Snyder, Stanford 6135077ab72216c596cd3f18e5724e1d https://www.encodeproject.org/files/ENCFF000VPH/@@download/ENCFF000VPH.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VPO bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 1 ENCFF000VPF 1201122391 Michael Snyder, Stanford 940248bbc40bfd37a970e768c821dba1 https://www.encodeproject.org/files/ENCFF000VPO/@@download/ENCFF000VPO.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VDP bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF000VPA, ENCFF000VPO 736283 Michael Snyder, Stanford 7264cd2dd1a9f716bb4536e89a539c21 https://www.encodeproject.org/files/ENCFF001VDP/@@download/ENCFF001VDP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF944BLM bam unfiltered alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VPF, ENCFF643CGH 1199649067 ENCODE Processing Pipeline 72e832c3cd7b98786522468d6b84a93a https://www.encodeproject.org/files/ENCFF944BLM/@@download/ENCFF944BLM.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF280TYK bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VPF, ENCFF643CGH 821161925 ENCODE Processing Pipeline db7398d1761e5f348e1c7dda4ad1718f https://www.encodeproject.org/files/ENCFF280TYK/@@download/ENCFF280TYK.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF757DXC bam unfiltered alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VPD, ENCFF643CGH 1258198113 ENCODE Processing Pipeline dd055fb3e20037de4957916055c95592 https://www.encodeproject.org/files/ENCFF757DXC/@@download/ENCFF757DXC.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF835YDD bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VPD, ENCFF643CGH 810777192 ENCODE Processing Pipeline daf6beea620f0668bff79c9b23693d33 https://www.encodeproject.org/files/ENCFF835YDD/@@download/ENCFF835YDD.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF292MAD bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VPD, ENCFF807MUK 811080112 ENCODE Processing Pipeline 4274a06aedd7b5bf659c831f8b3861e1 https://www.encodeproject.org/files/ENCFF292MAD/@@download/ENCFF292MAD.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF282MZF bam unfiltered alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VPD, ENCFF807MUK 1252810374 ENCODE Processing Pipeline 233a74f189a7b1861a397b35de040a02 https://www.encodeproject.org/files/ENCFF282MZF/@@download/ENCFF282MZF.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF378FXS bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VPF, ENCFF807MUK 821362934 ENCODE Processing Pipeline 8e5531c9c20ab88318d04e8eaeaaefe4 https://www.encodeproject.org/files/ENCFF378FXS/@@download/ENCFF378FXS.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF423BMA bam unfiltered alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VPF, ENCFF807MUK 1194174606 ENCODE Processing Pipeline 65ddb2d56258789634851372b5d5d2fb https://www.encodeproject.org/files/ENCFF423BMA/@@download/ENCFF423BMA.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF530XZU bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF197CSR 11477908 ENCODE Processing Pipeline 50a10b82568b06cb2b5ec709037174e6 https://www.encodeproject.org/files/ENCFF530XZU/@@download/ENCFF530XZU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF534NOV bigWig signal p-value ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF777NWU, ENCFF835YDD, ENCFF857MFM 571684470 ENCODE Processing Pipeline ebb6bf300bf331c42844037569d77bf6 https://www.encodeproject.org/files/ENCFF534NOV/@@download/ENCFF534NOV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF981OJS bigWig signal p-value ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF280TYK, ENCFF777NWU, ENCFF857MFM 533735358 ENCODE Processing Pipeline 38f3555adef6fb24483a55f4bcc1fb9e https://www.encodeproject.org/files/ENCFF981OJS/@@download/ENCFF981OJS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF277ZAR bed narrowPeak conservative idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF197CSR, ENCFF419RSJ, ENCFF728DOD, ENCFF761MXG 612210 ENCODE Processing Pipeline 22fd1442eea12dc38b86cf90363f9438 https://www.encodeproject.org/files/ENCFF277ZAR/@@download/ENCFF277ZAR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF816XLT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF646TUX 1415791 ENCODE Processing Pipeline d973caa18467af89bd433f91ae2926ad https://www.encodeproject.org/files/ENCFF816XLT/@@download/ENCFF816XLT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF761MXG bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF280TYK, ENCFF777NWU, ENCFF857MFM 4627579 ENCODE Processing Pipeline f07388e84ef4772dc0c8060fb84ff6f9 https://www.encodeproject.org/files/ENCFF761MXG/@@download/ENCFF761MXG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF728DOD bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF280TYK, ENCFF777NWU, ENCFF835YDD, ENCFF857MFM 5455685 ENCODE Processing Pipeline 40e8cbfa1debbc4c8f0543ec62852e74 https://www.encodeproject.org/files/ENCFF728DOD/@@download/ENCFF728DOD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF747MDW bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF728DOD 11896657 ENCODE Processing Pipeline a5ee2dbf6a8ad119f0cdc154edc14797 https://www.encodeproject.org/files/ENCFF747MDW/@@download/ENCFF747MDW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF646TUX bed narrowPeak optimal idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF197CSR, ENCFF419RSJ, ENCFF728DOD, ENCFF761MXG 786194 ENCODE Processing Pipeline df17d627ec4ff9af4a702ffa2e6c8dda https://www.encodeproject.org/files/ENCFF646TUX/@@download/ENCFF646TUX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF693IEL bigWig signal p-value ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF280TYK, ENCFF777NWU, ENCFF835YDD, ENCFF857MFM 810924312 ENCODE Processing Pipeline a0f26b1cef4541707ef6e128fd0067ec https://www.encodeproject.org/files/ENCFF693IEL/@@download/ENCFF693IEL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF858KCB bigWig fold change over control ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF777NWU, ENCFF835YDD, ENCFF857MFM 473227536 ENCODE Processing Pipeline f82c8401bbedb8580e93dbd30ee00490 https://www.encodeproject.org/files/ENCFF858KCB/@@download/ENCFF858KCB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF751HWN bigWig fold change over control ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF280TYK, ENCFF777NWU, ENCFF835YDD, ENCFF857MFM 798522559 ENCODE Processing Pipeline 69e0872c154c76793488cab58caee20b https://www.encodeproject.org/files/ENCFF751HWN/@@download/ENCFF751HWN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF197CSR bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF777NWU, ENCFF835YDD, ENCFF857MFM 4799577 ENCODE Processing Pipeline 7ea0eed92b9c89423e77e6d05cc6e8f2 https://www.encodeproject.org/files/ENCFF197CSR/@@download/ENCFF197CSR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF843MKW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF277ZAR 1175875 ENCODE Processing Pipeline b79a658d9c340b548b55c0d3404e8320 https://www.encodeproject.org/files/ENCFF843MKW/@@download/ENCFF843MKW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF415CIR bigWig fold change over control ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF280TYK, ENCFF777NWU, ENCFF857MFM 493576760 ENCODE Processing Pipeline da1f5fa7fcb01b4ebb315b71b1ff0837 https://www.encodeproject.org/files/ENCFF415CIR/@@download/ENCFF415CIR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF126MIG bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF761MXG 11120362 ENCODE Processing Pipeline 9479563ea86afb2584edbb38fbf07f1f https://www.encodeproject.org/files/ENCFF126MIG/@@download/ENCFF126MIG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF894PHV bigWig signal p-value ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF292MAD, ENCFF296BML, ENCFF378FXS, ENCFF512WDI 814183410 ENCODE Processing Pipeline 888ce24488b9f37e6774aa0c63f85b27 https://www.encodeproject.org/files/ENCFF894PHV/@@download/ENCFF894PHV.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF016LOY bigWig signal p-value ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF292MAD, ENCFF296BML, ENCFF512WDI 585375212 ENCODE Processing Pipeline d6e66eca796c814bca98e5ac6dd68654 https://www.encodeproject.org/files/ENCFF016LOY/@@download/ENCFF016LOY.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF946MZH bigWig fold change over control ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF292MAD, ENCFF296BML, ENCFF378FXS, ENCFF512WDI 803101630 ENCODE Processing Pipeline 6630b1fb6bac3ef1511f889f8ef6e471 https://www.encodeproject.org/files/ENCFF946MZH/@@download/ENCFF946MZH.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF377UTP bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF378FXS, ENCFF512WDI 4628592 ENCODE Processing Pipeline 1f51be56a8b2367fb25ba99d8e936c45 https://www.encodeproject.org/files/ENCFF377UTP/@@download/ENCFF377UTP.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF320LNM bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF292MAD, ENCFF296BML, ENCFF512WDI 4801539 ENCODE Processing Pipeline 3cf14959a446c6703ff85a94b0c19eae https://www.encodeproject.org/files/ENCFF320LNM/@@download/ENCFF320LNM.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF026JCP bed narrowPeak conservative idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF144GCK, ENCFF320LNM, ENCFF377UTP 611431 ENCODE Processing Pipeline 366e23f1c819d7ef2f32d3f9b378dcd5 https://www.encodeproject.org/files/ENCFF026JCP/@@download/ENCFF026JCP.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF633OKQ bigWig fold change over control ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF292MAD, ENCFF296BML, ENCFF512WDI 473154993 ENCODE Processing Pipeline 280bf43838c4d2f75546f087ad39b16d https://www.encodeproject.org/files/ENCFF633OKQ/@@download/ENCFF633OKQ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF219KSQ bigWig signal p-value ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF378FXS, ENCFF512WDI 570570676 ENCODE Processing Pipeline 33fe6a498d4fd58fadcac91cb1a49998 https://www.encodeproject.org/files/ENCFF219KSQ/@@download/ENCFF219KSQ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF450AKV bigWig fold change over control ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF378FXS, ENCFF512WDI 494563891 ENCODE Processing Pipeline 197267335fd70c3989edc0f50beef8e0 https://www.encodeproject.org/files/ENCFF450AKV/@@download/ENCFF450AKV.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF144GCK bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF292MAD, ENCFF296BML, ENCFF378FXS, ENCFF512WDI 5456900 ENCODE Processing Pipeline 1f0b67bad704fa071fe4b96ac0577693 https://www.encodeproject.org/files/ENCFF144GCK/@@download/ENCFF144GCK.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF883QHP bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF320LNM 11473706 ENCODE Processing Pipeline 33f2a88f56a0973ac1e78c799a1e89fe https://www.encodeproject.org/files/ENCFF883QHP/@@download/ENCFF883QHP.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF377CJI bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377UTP 11116632 ENCODE Processing Pipeline 718df90a925a1ab82116ce4b9a9b35b1 https://www.encodeproject.org/files/ENCFF377CJI/@@download/ENCFF377CJI.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF656PTB bigBed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144GCK 11895340 ENCODE Processing Pipeline 996164470c82d0d8b0ad5f18db9eb5c4 https://www.encodeproject.org/files/ENCFF656PTB/@@download/ENCFF656PTB.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF714NGN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF026JCP 1175001 ENCODE Processing Pipeline 8e9292b60468b64b819653eb56419055 https://www.encodeproject.org/files/ENCFF714NGN/@@download/ENCFF714NGN.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF543VGD bed narrowPeak optimal idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF144GCK, ENCFF320LNM, ENCFF377UTP 783720 ENCODE Processing Pipeline 5ec46ebb8b1b8b0b3efca5ee107976ef https://www.encodeproject.org/files/ENCFF543VGD/@@download/ENCFF543VGD.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF818BMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF543VGD 1411200 ENCODE Processing Pipeline aefb7a32395db44e8cc2ac26e3f764da https://www.encodeproject.org/files/ENCFF818BMB/@@download/ENCFF818BMB.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000QIF bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QIS 1547529622 Richard Myers, HAIB 578a7c37f568b487c9a945eb57beaf27 https://www.encodeproject.org/files/ENCFF000QIF/@@download/ENCFF000QIF.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000QIG bigBed broadPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001ULR 670584 Richard Myers, HAIB 0d6607d4e4957dfe4c8d0cfd04223af2 https://www.encodeproject.org/files/ENCFF000QIG/@@download/ENCFF000QIG.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000QIH bigBed broadPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001ULT 1266312 Richard Myers, HAIB 57ee534deeec248617c83375ed075b2a https://www.encodeproject.org/files/ENCFF000QIH/@@download/ENCFF000QIH.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000QIJ bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QIW 1899072688 Richard Myers, HAIB 26d4a74d3bf5c8fbece32811bbdf16be https://www.encodeproject.org/files/ENCFF000QIJ/@@download/ENCFF000QIJ.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000QIK bigWig raw signal ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 1 35704916 Richard Myers, HAIB 502c2a3ee3cd02bfa9a39bc4add058e0 https://www.encodeproject.org/files/ENCFF000QIK/@@download/ENCFF000QIK.bigWig hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000QIL bigWig raw signal ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 1 53989655 Richard Myers, HAIB 50d273c523bff1fe65cb675b757fe426 https://www.encodeproject.org/files/ENCFF000QIL/@@download/ENCFF000QIL.bigWig hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000QIS fastq reads ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1517577972 Richard Myers, HAIB 5e1a8fd6006d430d0d04d2678dc4b311 https://www.encodeproject.org/files/ENCFF000QIS/@@download/ENCFF000QIS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000QIW fastq reads ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1916430655 Richard Myers, HAIB aea18ce14472eebcc9d525e2f86a9aa2 https://www.encodeproject.org/files/ENCFF000QIW/@@download/ENCFF000QIW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001ULR bed broadPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 1 433550 Richard Myers, HAIB 7ab62d6adc72f387a4659bd33c6c6bef https://www.encodeproject.org/files/ENCFF001ULR/@@download/ENCFF001ULR.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001ULT bed broadPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 1 765383 Richard Myers, HAIB 0dcd4573da528a6e7a40ccea2eecb7a6 https://www.encodeproject.org/files/ENCFF001ULT/@@download/ENCFF001ULT.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CMT bed narrowPeak optimal idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 623516 ENCODE Consortium Analysis Working Group 90e37355f317426523602e11b566c865 https://www.encodeproject.org/files/ENCFF002CMT/@@download/ENCFF002CMT.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF619KVA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CMT 1252703 ENCODE Consortium 3a72697c1469b0e6fc44119722beea92 https://www.encodeproject.org/files/ENCFF619KVA/@@download/ENCFF619KVA.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF683WRR bam unfiltered alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIS, ENCFF643CGH 1682641840 ENCODE Processing Pipeline 4e2dcf27975e5ebda4d4e3de3e9b77ce https://www.encodeproject.org/files/ENCFF683WRR/@@download/ENCFF683WRR.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF790FNF bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIS, ENCFF643CGH 1122993833 ENCODE Processing Pipeline 880064634930df4e6e5799ee789c241a https://www.encodeproject.org/files/ENCFF790FNF/@@download/ENCFF790FNF.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF324YZW bam unfiltered alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QIW, ENCFF643CGH 2077785756 ENCODE Processing Pipeline 61008059b220d2264b99e07b0307adf9 https://www.encodeproject.org/files/ENCFF324YZW/@@download/ENCFF324YZW.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF516UTV bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QIW, ENCFF643CGH 1332696728 ENCODE Processing Pipeline 0e31d980062fc4145af69385d6201308 https://www.encodeproject.org/files/ENCFF516UTV/@@download/ENCFF516UTV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF386SKS bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIS, ENCFF807MUK 1123456658 ENCODE Processing Pipeline db09a915c690d33899f975c7d3c60aab https://www.encodeproject.org/files/ENCFF386SKS/@@download/ENCFF386SKS.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF102ECA bam unfiltered alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIS, ENCFF807MUK 1679321416 ENCODE Processing Pipeline 5eeb2f4e1339b18cbbfff4c785479ff7 https://www.encodeproject.org/files/ENCFF102ECA/@@download/ENCFF102ECA.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF616BNF bam unfiltered alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QIW, ENCFF807MUK 2074168325 ENCODE Processing Pipeline 69fa2d86fef4b23e4b3aa89ad43ad422 https://www.encodeproject.org/files/ENCFF616BNF/@@download/ENCFF616BNF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF455XOX bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QIW, ENCFF807MUK 1333424025 ENCODE Processing Pipeline a61a4c12a0e3bcfc903b45f45a6875fe https://www.encodeproject.org/files/ENCFF455XOX/@@download/ENCFF455XOX.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF847WJF bigWig signal p-value ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF790FNF, ENCFF836OEO 788196150 ENCODE Processing Pipeline 281463f090899befbba894808a2c9e4f https://www.encodeproject.org/files/ENCFF847WJF/@@download/ENCFF847WJF.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF999MGO bigWig signal p-value ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF516UTV, ENCFF836OEO 680521169 ENCODE Processing Pipeline ca15c3ac06e2c061f8874ea2342b9611 https://www.encodeproject.org/files/ENCFF999MGO/@@download/ENCFF999MGO.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF853NIP bigWig signal p-value ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF516UTV, ENCFF790FNF, ENCFF836OEO 826426884 ENCODE Processing Pipeline 164c60dc6a328a42464cb068c346e3be https://www.encodeproject.org/files/ENCFF853NIP/@@download/ENCFF853NIP.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF940JMG bigWig fold change over control ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF790FNF, ENCFF836OEO 629172388 ENCODE Processing Pipeline 4d7b2dcf94670c74ee82f38f652398b1 https://www.encodeproject.org/files/ENCFF940JMG/@@download/ENCFF940JMG.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF724ZJT bigWig fold change over control ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF516UTV, ENCFF836OEO 666200794 ENCODE Processing Pipeline 8156d06a1d1e44905a48108bba32f353 https://www.encodeproject.org/files/ENCFF724ZJT/@@download/ENCFF724ZJT.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF950JFN bigWig fold change over control ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF516UTV, ENCFF790FNF, ENCFF836OEO 1011329238 ENCODE Processing Pipeline 89256eda19052136568710800bce6303 https://www.encodeproject.org/files/ENCFF950JFN/@@download/ENCFF950JFN.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF299QNM bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF516UTV, ENCFF790FNF, ENCFF836OEO 7037740 ENCODE Processing Pipeline 6f9388b8a1e1bd07f65361eafd5fb445 https://www.encodeproject.org/files/ENCFF299QNM/@@download/ENCFF299QNM.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF841NBP bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF790FNF, ENCFF836OEO 6212835 ENCODE Processing Pipeline ee29b0cffb6c589e4e173445c51c4f4a https://www.encodeproject.org/files/ENCFF841NBP/@@download/ENCFF841NBP.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF364WTP bigBed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF299QNM 13142728 ENCODE Processing Pipeline b782e5b0bfd0f6415b8a74bae26dc042 https://www.encodeproject.org/files/ENCFF364WTP/@@download/ENCFF364WTP.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF736BJY bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF516UTV, ENCFF836OEO 6566541 ENCODE Processing Pipeline 0253413adfbb4baa40646189ecfd0382 https://www.encodeproject.org/files/ENCFF736BJY/@@download/ENCFF736BJY.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF878SHR bigBed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF841NBP 13173228 ENCODE Processing Pipeline 4efd1fdc6e48b90c5b745f11416320c9 https://www.encodeproject.org/files/ENCFF878SHR/@@download/ENCFF878SHR.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF562CUC bigBed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF736BJY 12895312 ENCODE Processing Pipeline 8edd7baf199cd81624fbaf6859c81f7a https://www.encodeproject.org/files/ENCFF562CUC/@@download/ENCFF562CUC.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF779ZST bed narrowPeak conservative idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF299QNM, ENCFF419RSJ, ENCFF736BJY, ENCFF841NBP 540415 ENCODE Processing Pipeline 136ebaa4e07d4e452ff77f4d52816a85 https://www.encodeproject.org/files/ENCFF779ZST/@@download/ENCFF779ZST.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF162KZS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF779ZST 1139415 ENCODE Processing Pipeline 5e65504a2f7228ebec1ed55ea8585d42 https://www.encodeproject.org/files/ENCFF162KZS/@@download/ENCFF162KZS.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF547MLB bed narrowPeak optimal idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF299QNM, ENCFF419RSJ, ENCFF736BJY, ENCFF841NBP 632110 ENCODE Processing Pipeline 2b0ac9b8c1ad843bb00b47401296ab78 https://www.encodeproject.org/files/ENCFF547MLB/@@download/ENCFF547MLB.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF272TIX bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF547MLB 1281040 ENCODE Processing Pipeline f8218c2d58a059dba4cbda6ad74fb4a8 https://www.encodeproject.org/files/ENCFF272TIX/@@download/ENCFF272TIX.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF175UQQ bigWig signal p-value ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF386SKS, ENCFF522HDC 597101417 ENCODE Processing Pipeline 1ae00a049690d2c35e8bdd73cf424234 https://www.encodeproject.org/files/ENCFF175UQQ/@@download/ENCFF175UQQ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF961DQD bigWig fold change over control ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF386SKS, ENCFF522HDC 621323393 ENCODE Processing Pipeline 196114d2028bbc5b1c6110b20c724c59 https://www.encodeproject.org/files/ENCFF961DQD/@@download/ENCFF961DQD.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF835OES bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF455XOX, ENCFF522HDC 6570249 ENCODE Processing Pipeline 212a2ff40851d7621a349d36fec6ab6d https://www.encodeproject.org/files/ENCFF835OES/@@download/ENCFF835OES.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF521AVU bigWig signal p-value ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF455XOX, ENCFF522HDC 612860963 ENCODE Processing Pipeline 6fc9e998c245c64ad4b7378e68983b4c https://www.encodeproject.org/files/ENCFF521AVU/@@download/ENCFF521AVU.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF318EUW bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF386SKS, ENCFF455XOX, ENCFF522HDC 6938675 ENCODE Processing Pipeline fe96b53d1e25772152725bf948eb7b36 https://www.encodeproject.org/files/ENCFF318EUW/@@download/ENCFF318EUW.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF929STX bigWig signal p-value ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF386SKS, ENCFF455XOX, ENCFF522HDC 826408803 ENCODE Processing Pipeline dafeca1df136c371518db32b7872fdfb https://www.encodeproject.org/files/ENCFF929STX/@@download/ENCFF929STX.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF104NCV bigBed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF835OES 12897378 ENCODE Processing Pipeline 12e349b7df4807f213fbe0d56fb06432 https://www.encodeproject.org/files/ENCFF104NCV/@@download/ENCFF104NCV.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF398ZBC bigBed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF318EUW 13020619 ENCODE Processing Pipeline 8af48d1063b0e1b886cbc9f17e3d3f7c https://www.encodeproject.org/files/ENCFF398ZBC/@@download/ENCFF398ZBC.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF740XZM bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF386SKS, ENCFF522HDC 6214545 ENCODE Processing Pipeline b15faa2477afa58c67eb3d8a2425d543 https://www.encodeproject.org/files/ENCFF740XZM/@@download/ENCFF740XZM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF209MQX bed narrowPeak optimal idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF318EUW, ENCFF740XZM, ENCFF835OES 592931 ENCODE Processing Pipeline 445f3e8cab3b8f9e3271a2b0583cf90c https://www.encodeproject.org/files/ENCFF209MQX/@@download/ENCFF209MQX.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF857RDC bed narrowPeak conservative idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF318EUW, ENCFF740XZM, ENCFF835OES 509263 ENCODE Processing Pipeline 493088f7b36e0daf4243b2872459f712 https://www.encodeproject.org/files/ENCFF857RDC/@@download/ENCFF857RDC.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF907BVK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF857RDC 866552 ENCODE Processing Pipeline 2af754e913032a4ed256d59f520e06b2 https://www.encodeproject.org/files/ENCFF907BVK/@@download/ENCFF907BVK.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF796QZZ bigWig fold change over control ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF455XOX, ENCFF522HDC 666796849 ENCODE Processing Pipeline df9a14d64fa2a5326a4048f337b9bd63 https://www.encodeproject.org/files/ENCFF796QZZ/@@download/ENCFF796QZZ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF920AQK bigWig fold change over control ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF386SKS, ENCFF455XOX, ENCFF522HDC 1011090514 ENCODE Processing Pipeline 3b86ef5e0dd348a18001326134865cf8 https://www.encodeproject.org/files/ENCFF920AQK/@@download/ENCFF920AQK.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF295AFM bigBed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF740XZM 13169435 ENCODE Processing Pipeline 6e8213325a2b803f0adbcb4f5a4b7227 https://www.encodeproject.org/files/ENCFF295AFM/@@download/ENCFF295AFM.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF006JXW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF209MQX 1218631 ENCODE Processing Pipeline 9031e26ad94c151302d289658589349c https://www.encodeproject.org/files/ENCFF006JXW/@@download/ENCFF006JXW.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ARL bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000ARU 606001190 Bradley Bernstein, Broad 57f58669d77e727da5e63061710810e3 https://www.encodeproject.org/files/ENCFF000ARL/@@download/ENCFF000ARL.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF000ARM bigBed broadPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SUC 1707275 Bradley Bernstein, Broad 9e73b13df8c17f830201ba7cb3c577cc https://www.encodeproject.org/files/ENCFF000ARM/@@download/ENCFF000ARM.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF000ARN bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000ASA 2021473991 Bradley Bernstein, Broad 1cdb9405911ae67a064eabeb1e19158c https://www.encodeproject.org/files/ENCFF000ARN/@@download/ENCFF000ARN.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF000ARQ bigWig signal ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 532114514 Bradley Bernstein, Broad 9b43df9e621c987a58b53cf2e2e48102 https://www.encodeproject.org/files/ENCFF000ARQ/@@download/ENCFF000ARQ.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms missing derived_from control insufficient read depth, insufficient read depth ENCFF000ARU fastq reads ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 913440984 Bradley Bernstein, Broad 7b09ce56796a67b4666945af22085cee https://www.encodeproject.org/files/ENCFF000ARU/@@download/ENCFF000ARU.fastq.gz Illumina Genome Analyzer /files/ENCFF000ARK/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, inconsistent control read length control insufficient read depth, insufficient read depth ENCFF000ASA fastq reads ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 2479370857 Bradley Bernstein, Broad e45eeadb049999f79e9bca0df2fcf6db https://www.encodeproject.org/files/ENCFF000ASA/@@download/ENCFF000ASA.fastq.gz Illumina Genome Analyzer /files/ENCFF000ARO/ released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, inconsistent control read length control insufficient read depth, insufficient read depth ENCFF001SUC bed broadPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 999864 Bradley Bernstein, Broad a596c652fc59eccb2f7f125cd2f8b4dc https://www.encodeproject.org/files/ENCFF001SUC/@@download/ENCFF001SUC.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms missing derived_from control insufficient read depth, insufficient read depth ENCFF002CDQ bed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 67149 ENCODE Consortium Analysis Working Group a83818c95d19d511da850dc44deb4452 https://www.encodeproject.org/files/ENCFF002CDQ/@@download/ENCFF002CDQ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms missing derived_from control insufficient read depth, insufficient read depth ENCFF422CPC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CDQ 250560 ENCODE Consortium 7c016d1bacb9eff7b62dc79b2263ab51 https://www.encodeproject.org/files/ENCFF422CPC/@@download/ENCFF422CPC.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF689FFZ bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF807MUK 494898473 ENCODE Processing Pipeline e1436c87690cfd58d4224e97becd9a41 https://www.encodeproject.org/files/ENCFF689FFZ/@@download/ENCFF689FFZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF916AYY bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF807MUK 1083821507 ENCODE Processing Pipeline 54a9aee63e77fcead9b00e54576d047e https://www.encodeproject.org/files/ENCFF916AYY/@@download/ENCFF916AYY.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF885ZDW bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF643CGH 1086174657 ENCODE Processing Pipeline 6d843a831ecb8ade114cc2a5730b3bd7 https://www.encodeproject.org/files/ENCFF885ZDW/@@download/ENCFF885ZDW.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF385WMX bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF807MUK 1635702472 ENCODE Processing Pipeline bf85c6c8ff39aff5ba7d2783a50077e7 https://www.encodeproject.org/files/ENCFF385WMX/@@download/ENCFF385WMX.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF621CEP bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF643CGH 495799350 ENCODE Processing Pipeline 05ea0ec6a0f159cfe5c10565a9cd9e1d https://www.encodeproject.org/files/ENCFF621CEP/@@download/ENCFF621CEP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF639DUN bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF807MUK 3049195128 ENCODE Processing Pipeline f21b16c0c98483362ec9fd4828bc644f https://www.encodeproject.org/files/ENCFF639DUN/@@download/ENCFF639DUN.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF731DXP bam unfiltered alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF643CGH 3059643402 ENCODE Processing Pipeline 8b43aea6b292171f7e3c7b05236e1ca3 https://www.encodeproject.org/files/ENCFF731DXP/@@download/ENCFF731DXP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF735FDV bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF643CGH 1637423189 ENCODE Processing Pipeline ac2ee70b74f4766f57abf8945e32518e https://www.encodeproject.org/files/ENCFF735FDV/@@download/ENCFF735FDV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF281QHE bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 283417740 ENCODE Processing Pipeline f2b96006766ef4e23c0f4d0e25160f52 https://www.encodeproject.org/files/ENCFF281QHE/@@download/ENCFF281QHE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF775CVC bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF621CEP, ENCFF735FDV, ENCFF797ARJ, ENCFF873ZWP 597495034 ENCODE Processing Pipeline 78b92654a86b494b7f61255e15db32a3 https://www.encodeproject.org/files/ENCFF775CVC/@@download/ENCFF775CVC.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF410SZR bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF232FPZ, ENCFF385WMX, ENCFF624TPS, ENCFF689FFZ 594710127 ENCODE Processing Pipeline 2f392ece81c78eaef899f704d613b20e https://www.encodeproject.org/files/ENCFF410SZR/@@download/ENCFF410SZR.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF244PEX bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178CPV 7652403 ENCODE Processing Pipeline 3b1cc4690f0c180329290626c1ccf604 https://www.encodeproject.org/files/ENCFF244PEX/@@download/ENCFF244PEX.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF437BUE bed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF178CPV, ENCFF411KUR, ENCFF859FLD 36495 ENCODE Processing Pipeline 11559363910cc493b4c81219baae602c https://www.encodeproject.org/files/ENCFF437BUE/@@download/ENCFF437BUE.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF134RHC bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF437BUE 148909 ENCODE Processing Pipeline e08e521290d1711382698910d4f2f361 https://www.encodeproject.org/files/ENCFF134RHC/@@download/ENCFF134RHC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF382ZVK bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF621CEP, ENCFF797ARJ, ENCFF873ZWP 172102474 ENCODE Processing Pipeline a5a762ba21a38b8d47476cac495f75fb https://www.encodeproject.org/files/ENCFF382ZVK/@@download/ENCFF382ZVK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF318GHR bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 171375246 ENCODE Processing Pipeline 2ff000a3c749c852f11b642d8a1d749b https://www.encodeproject.org/files/ENCFF318GHR/@@download/ENCFF318GHR.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF919ADC bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF081ZWY 10575880 ENCODE Processing Pipeline 94fac15790688ccbbb39e2d96cda08a2 https://www.encodeproject.org/files/ENCFF919ADC/@@download/ENCFF919ADC.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF723CXZ bed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF081ZWY, ENCFF286JCT, ENCFF419RSJ, ENCFF625HQF 36386 ENCODE Processing Pipeline 2b73fe02b69aa3a6ba9c982fbdd92d2a https://www.encodeproject.org/files/ENCFF723CXZ/@@download/ENCFF723CXZ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF908OCL bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 105254100 ENCODE Processing Pipeline b6496916dce25d953c1e26ec23102aee https://www.encodeproject.org/files/ENCFF908OCL/@@download/ENCFF908OCL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF286JCT bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF621CEP, ENCFF797ARJ, ENCFF873ZWP 3582568 ENCODE Processing Pipeline 5e770615a051e3bb5c6e7c649226bf86 https://www.encodeproject.org/files/ENCFF286JCT/@@download/ENCFF286JCT.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF615NYO bed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF081ZWY, ENCFF286JCT, ENCFF419RSJ, ENCFF625HQF 41006 ENCODE Processing Pipeline 32b8833270ef5be47f05697a7ff1751a https://www.encodeproject.org/files/ENCFF615NYO/@@download/ENCFF615NYO.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF273NDY bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF621CEP, ENCFF797ARJ, ENCFF873ZWP 259036665 ENCODE Processing Pipeline 4f70b67fcc2b31cc0a9167464c98dc85 https://www.encodeproject.org/files/ENCFF273NDY/@@download/ENCFF273NDY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF517VVT bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF735FDV, ENCFF873ZWP 105001888 ENCODE Processing Pipeline 0ce95a036ebda8bf0b7565b952a2da96 https://www.encodeproject.org/files/ENCFF517VVT/@@download/ENCFF517VVT.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF522HVU bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF232FPZ, ENCFF385WMX, ENCFF624TPS, ENCFF689FFZ 258933697 ENCODE Processing Pipeline 1984511a173fc24daa835a81dfed84a7 https://www.encodeproject.org/files/ENCFF522HVU/@@download/ENCFF522HVU.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF004QWG bigWig signal p-value ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF621CEP, ENCFF735FDV, ENCFF797ARJ, ENCFF873ZWP 258788404 ENCODE Processing Pipeline abda0088c18e00f48ebf0c6891e2bd8e https://www.encodeproject.org/files/ENCFF004QWG/@@download/ENCFF004QWG.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF728SMW bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF735FDV, ENCFF873ZWP 413551974 ENCODE Processing Pipeline 3013c8bb45111a4118c7528ec6b3d377 https://www.encodeproject.org/files/ENCFF728SMW/@@download/ENCFF728SMW.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF419RDX bigWig fold change over control ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 414924882 ENCODE Processing Pipeline 59f678ddb0980ecdd75e539d6a3edaf1 https://www.encodeproject.org/files/ENCFF419RDX/@@download/ENCFF419RDX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF081ZWY bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF735FDV, ENCFF873ZWP 3872993 ENCODE Processing Pipeline 0d16cfb165c5aee10d4982d2b5775eed https://www.encodeproject.org/files/ENCFF081ZWY/@@download/ENCFF081ZWY.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF625HQF bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF621CEP, ENCFF735FDV, ENCFF797ARJ, ENCFF873ZWP 4511195 ENCODE Processing Pipeline 1b517fc4c23a2c2cdcffc4493c0c7aef https://www.encodeproject.org/files/ENCFF625HQF/@@download/ENCFF625HQF.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF166IXY bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF286JCT 7462901 ENCODE Processing Pipeline 02a81476f60bafeecef54c0f909bd8cc https://www.encodeproject.org/files/ENCFF166IXY/@@download/ENCFF166IXY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF664MXA bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF625HQF 11025691 ENCODE Processing Pipeline fc2cfe436bbd75d07fee18f4f7388289 https://www.encodeproject.org/files/ENCFF664MXA/@@download/ENCFF664MXA.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF847AAW bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF723CXZ 148864 ENCODE Processing Pipeline 60c87532cf304ea07e111bb79273ff59 https://www.encodeproject.org/files/ENCFF847AAW/@@download/ENCFF847AAW.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF577NKT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF615NYO 159344 ENCODE Processing Pipeline c415c7a0204ff1fac1e40827cac05b5a https://www.encodeproject.org/files/ENCFF577NKT/@@download/ENCFF577NKT.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF178CPV bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 3611423 ENCODE Processing Pipeline aa57a289d0f83c5406354f8f0fbef9cf https://www.encodeproject.org/files/ENCFF178CPV/@@download/ENCFF178CPV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF411KUR bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 3774499 ENCODE Processing Pipeline 742a8111971ca27407f29349b300b741 https://www.encodeproject.org/files/ENCFF411KUR/@@download/ENCFF411KUR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF859FLD bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF232FPZ, ENCFF385WMX, ENCFF624TPS, ENCFF689FFZ 4513352 ENCODE Processing Pipeline ca6474437aaa29e3bb314b8bb02fc616 https://www.encodeproject.org/files/ENCFF859FLD/@@download/ENCFF859FLD.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF131RRB bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF411KUR 10423837 ENCODE Processing Pipeline 81869d7da9bb4989f15bec736f65b730 https://www.encodeproject.org/files/ENCFF131RRB/@@download/ENCFF131RRB.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF076LAP bigBed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF859FLD 11025744 ENCODE Processing Pipeline 423c2a832dc407d82691d9e4836dc3fb https://www.encodeproject.org/files/ENCFF076LAP/@@download/ENCFF076LAP.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF413QYZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF678JII 151427 ENCODE Processing Pipeline 034aa0e63dc3ad603daeb9bad1aac3e2 https://www.encodeproject.org/files/ENCFF413QYZ/@@download/ENCFF413QYZ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF678JII bed narrowPeak optimal idr thresholded peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF178CPV, ENCFF411KUR, ENCFF859FLD 37189 ENCODE Processing Pipeline e89a61b52a33a3db505994d17393df9a https://www.encodeproject.org/files/ENCFF678JII/@@download/ENCFF678JII.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF000OGR bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OHD 613483194 Richard Myers, HAIB 24a2ca939da55ffe2958023eeffee74f https://www.encodeproject.org/files/ENCFF000OGR/@@download/ENCFF000OGR.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGS bigBed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZM 255525 Richard Myers, HAIB af4e1b9327cd084639919d2e768ad785 https://www.encodeproject.org/files/ENCFF000OGS/@@download/ENCFF000OGS.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGT bigBed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZN 215469 Richard Myers, HAIB 0ea13b70bd207cb37ad075ea61bb9954 https://www.encodeproject.org/files/ENCFF000OGT/@@download/ENCFF000OGT.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGU bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OHN 1391925461 Richard Myers, HAIB 1e8c35412f97c002d1f86d2cc784d48b https://www.encodeproject.org/files/ENCFF000OGU/@@download/ENCFF000OGU.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGW bigWig raw signal ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 26954765 Richard Myers, HAIB 61b1d1adab0e954fe654d1c8526d291c https://www.encodeproject.org/files/ENCFF000OGW/@@download/ENCFF000OGW.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OGX bigWig raw signal ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 51501435 Richard Myers, HAIB 08ac028c8f96fa4fe9c5e8b9bdf15395 https://www.encodeproject.org/files/ENCFF000OGX/@@download/ENCFF000OGX.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OHD fastq reads ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1342435398 Richard Myers, HAIB 6ac3ffa3d0a83540737df8b93631025a https://www.encodeproject.org/files/ENCFF000OHD/@@download/ENCFF000OHD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODG/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF000OHN fastq reads ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 25 single-ended 379088159 Richard Myers, HAIB 0f47495c79c51b624861af04ab420b56 https://www.encodeproject.org/files/ENCFF000OHN/@@download/ENCFF000OHN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODJ/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF001TZM bed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 121809 Richard Myers, HAIB a02761e197f19db12dbeec83a26b0f35 https://www.encodeproject.org/files/ENCFF001TZM/@@download/ENCFF001TZM.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth extremely low read length ENCFF001TZN bed broadPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 95852 Richard Myers, HAIB f8b69275bef0e183cd9e21d590d15b30 https://www.encodeproject.org/files/ENCFF001TZN/@@download/ENCFF001TZN.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF002CIB bed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 213517 ENCODE Consortium Analysis Working Group 1bf2991d99a656a47e86871db2d854ab https://www.encodeproject.org/files/ENCFF002CIB/@@download/ENCFF002CIB.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth extremely low read length ENCFF595QNM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIB 459056 ENCODE Consortium 81bf9f199d858f0f285b16f1de7766e2 https://www.encodeproject.org/files/ENCFF595QNM/@@download/ENCFF595QNM.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF798UJL bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF807MUK 585074841 ENCODE Processing Pipeline f48c8ba9b764f79a4cc2c701a61d8d0b https://www.encodeproject.org/files/ENCFF798UJL/@@download/ENCFF798UJL.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF899CBZ bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF807MUK 252147042 ENCODE Processing Pipeline fcb27e6620808b6aeb3f427af5f8cdda https://www.encodeproject.org/files/ENCFF899CBZ/@@download/ENCFF899CBZ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF898NMW bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF643CGH 586651835 ENCODE Processing Pipeline b9df53886d82e602f66dc9e1050d466f https://www.encodeproject.org/files/ENCFF898NMW/@@download/ENCFF898NMW.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF737VAT bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF643CGH 255029592 ENCODE Processing Pipeline 85e8d4a24f36fd3a146fd9ef780021ec https://www.encodeproject.org/files/ENCFF737VAT/@@download/ENCFF737VAT.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF616RGW bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF643CGH 1278803126 ENCODE Processing Pipeline 1ba98d49432730069089a970b2319c06 https://www.encodeproject.org/files/ENCFF616RGW/@@download/ENCFF616RGW.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF845IBA bam unfiltered alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF807MUK 1279036426 ENCODE Processing Pipeline ae3eaa8ab858aa486d5890d5ce47fec6 https://www.encodeproject.org/files/ENCFF845IBA/@@download/ENCFF845IBA.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF281OFW bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF807MUK 323777819 ENCODE Processing Pipeline cd1c00bd3bccf185c128a98ff22e1979 https://www.encodeproject.org/files/ENCFF281OFW/@@download/ENCFF281OFW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF074OYP bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF643CGH 326611157 ENCODE Processing Pipeline 9803b0e54dd2d4caf6e288471a4fb4ab https://www.encodeproject.org/files/ENCFF074OYP/@@download/ENCFF074OYP.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF646IET bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074OYP, ENCFF289ONG, ENCFF862QZT 531292140 ENCODE Processing Pipeline cb99407c4fe8aae6865429df28708a94 https://www.encodeproject.org/files/ENCFF646IET/@@download/ENCFF646IET.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF648SWK bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 499786399 ENCODE Processing Pipeline 4b057b30d5568aa7e74ba0624d052529 https://www.encodeproject.org/files/ENCFF648SWK/@@download/ENCFF648SWK.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF338QSO bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074OYP, ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 589327607 ENCODE Processing Pipeline 6d26189c64a97c7f6ea93245859987c7 https://www.encodeproject.org/files/ENCFF338QSO/@@download/ENCFF338QSO.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF204SRC bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 535994248 ENCODE Processing Pipeline 0de0cc58c709fb0d6f467fd1f71cde41 https://www.encodeproject.org/files/ENCFF204SRC/@@download/ENCFF204SRC.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF255MKP bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 478277269 ENCODE Processing Pipeline 27ef5139e162e2ad94d7c3115e4429ad https://www.encodeproject.org/files/ENCFF255MKP/@@download/ENCFF255MKP.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF556UQH bigWig signal p-value ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 572127130 ENCODE Processing Pipeline 67c2a6a6d5696b66f20281c3102abd15 https://www.encodeproject.org/files/ENCFF556UQH/@@download/ENCFF556UQH.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF991WSC bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074OYP, ENCFF289ONG, ENCFF862QZT 274747835 ENCODE Processing Pipeline f8a8dbaff67786ba5e44efa4b4d14a4f https://www.encodeproject.org/files/ENCFF991WSC/@@download/ENCFF991WSC.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF052JHA bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 272977058 ENCODE Processing Pipeline 7286330509967ec6a2f8f893c6e0ca87 https://www.encodeproject.org/files/ENCFF052JHA/@@download/ENCFF052JHA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF425CNQ bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 228102171 ENCODE Processing Pipeline 6952e8c255ed4eabe10be7540fd1c4d4 https://www.encodeproject.org/files/ENCFF425CNQ/@@download/ENCFF425CNQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF856RZG bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 228948768 ENCODE Processing Pipeline c39472b2b1126e0079a3f6c777b4fbd1 https://www.encodeproject.org/files/ENCFF856RZG/@@download/ENCFF856RZG.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF344JQP bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074OYP, ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 431554330 ENCODE Processing Pipeline 4cf048056c25406c6c9b6de27ca1bf47 https://www.encodeproject.org/files/ENCFF344JQP/@@download/ENCFF344JQP.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF427RYH bigWig fold change over control ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 423716196 ENCODE Processing Pipeline b246cce2e37729f0cbd733cfa7b19c3d https://www.encodeproject.org/files/ENCFF427RYH/@@download/ENCFF427RYH.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF274NLK bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074OYP, ENCFF289ONG, ENCFF862QZT 4422024 ENCODE Processing Pipeline 71b940ff4d33a9caf1927be37d115a9e https://www.encodeproject.org/files/ENCFF274NLK/@@download/ENCFF274NLK.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF277JBW bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 2402679 ENCODE Processing Pipeline 0829a49276284e40689ba46092519c52 https://www.encodeproject.org/files/ENCFF277JBW/@@download/ENCFF277JBW.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF507WAU bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF074OYP, ENCFF289ONG, ENCFF737VAT, ENCFF862QZT 5097825 ENCODE Processing Pipeline 30b3fb90859a29a2527acfcaffbef4c3 https://www.encodeproject.org/files/ENCFF507WAU/@@download/ENCFF507WAU.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF518BAN bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 2426289 ENCODE Processing Pipeline 25dfe68525a7de8c54c3f2ec7bebd924 https://www.encodeproject.org/files/ENCFF518BAN/@@download/ENCFF518BAN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF715BUI bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF277JBW 5033240 ENCODE Processing Pipeline 17ee21ff3c081c5ba0795427414c4543 https://www.encodeproject.org/files/ENCFF715BUI/@@download/ENCFF715BUI.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF066IRT bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF274NLK 10014510 ENCODE Processing Pipeline 5763d1cc8ac1fb6f158fc4225e6fe81e https://www.encodeproject.org/files/ENCFF066IRT/@@download/ENCFF066IRT.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF083HDR bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 4469694 ENCODE Processing Pipeline 03ef3cbb3fb149e90b9b0bd0f99b3e77 https://www.encodeproject.org/files/ENCFF083HDR/@@download/ENCFF083HDR.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF238JYT bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 5119994 ENCODE Processing Pipeline 3c1e7a83b4cdb58a9e95a2bee4ee8527 https://www.encodeproject.org/files/ENCFF238JYT/@@download/ENCFF238JYT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF223PZJ bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF507WAU 11160568 ENCODE Processing Pipeline 6b69d33900a4ed3a1893bbccd4f5a362 https://www.encodeproject.org/files/ENCFF223PZJ/@@download/ENCFF223PZJ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF067KHH bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF083HDR 10112478 ENCODE Processing Pipeline 67918375dd125e4f28a2558cd30a8d01 https://www.encodeproject.org/files/ENCFF067KHH/@@download/ENCFF067KHH.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF680VWB bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF238JYT 11181429 ENCODE Processing Pipeline f031da6444c9db142886a60a8dbd7406 https://www.encodeproject.org/files/ENCFF680VWB/@@download/ENCFF680VWB.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF859GUL bed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF083HDR, ENCFF238JYT, ENCFF518BAN 114600 ENCODE Processing Pipeline 1728913b9d4edae983ff10f874f832d8 https://www.encodeproject.org/files/ENCFF859GUL/@@download/ENCFF859GUL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF894FDP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF701QXK 280518 ENCODE Processing Pipeline ba8d96a09ca396ada1f3d33ae4d8ad72 https://www.encodeproject.org/files/ENCFF894FDP/@@download/ENCFF894FDP.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF016ITG bigBed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF518BAN 5081093 ENCODE Processing Pipeline d9f551d5e0cbc0747b0c31d1742d8033 https://www.encodeproject.org/files/ENCFF016ITG/@@download/ENCFF016ITG.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF310XNW bed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NLK, ENCFF277JBW, ENCFF419RSJ, ENCFF507WAU 121642 ENCODE Processing Pipeline 9cb9d27ea4aa1231aedfabb023389e3c https://www.encodeproject.org/files/ENCFF310XNW/@@download/ENCFF310XNW.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF633LAR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310XNW 260314 ENCODE Processing Pipeline 21765dd28396752614e5f86462107636 https://www.encodeproject.org/files/ENCFF633LAR/@@download/ENCFF633LAR.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF701QXK bed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF274NLK, ENCFF277JBW, ENCFF419RSJ, ENCFF507WAU 141860 ENCODE Processing Pipeline 240ff17a5ab330385ccb93838dbe7fc6 https://www.encodeproject.org/files/ENCFF701QXK/@@download/ENCFF701QXK.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF805GKD bed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF083HDR, ENCFF238JYT, ENCFF518BAN 139678 ENCODE Processing Pipeline f645df6ebe696a996c18451fce189d75 https://www.encodeproject.org/files/ENCFF805GKD/@@download/ENCFF805GKD.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF735UYL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF805GKD 278160 ENCODE Processing Pipeline 372a6c7a2c336aeb5d9bd841a3bd24e8 https://www.encodeproject.org/files/ENCFF735UYL/@@download/ENCFF735UYL.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF615SEL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF859GUL 252062 ENCODE Processing Pipeline b526708852aab4ef0bf8e106b9f495ae https://www.encodeproject.org/files/ENCFF615SEL/@@download/ENCFF615SEL.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF950IWA fastq reads ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF071FDH 1988716545 Richard Myers, HAIB b1e5a6bd69297652088e02b5324b9e4a SRA:SRR6213684 https://www.encodeproject.org/files/ENCFF950IWA/@@download/ENCFF950IWA.fastq.gz Illumina HiSeq 2000 /files/ENCFF877SGG/ released antibody characterized with exemption missing control alignments ENCFF071FDH fastq reads ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF950IWA 2083765267 Richard Myers, HAIB cac209eef465c298032a2caf9df95eb7 SRA:SRR6213684 https://www.encodeproject.org/files/ENCFF071FDH/@@download/ENCFF071FDH.fastq.gz Illumina HiSeq 2000 /files/ENCFF332OUJ/ released antibody characterized with exemption missing control alignments ENCFF037XHJ bam unfiltered alignments ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF071FDH, ENCFF643CGH, ENCFF950IWA 4927019358 ENCODE Processing Pipeline b6d567b897aeb5ee645f94acff596a09 https://www.encodeproject.org/files/ENCFF037XHJ/@@download/ENCFF037XHJ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF004NBT bam unfiltered alignments ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF071FDH, ENCFF807MUK, ENCFF950IWA 4908614515 ENCODE Processing Pipeline 1304a5ce271f4db5f5def7d480961350 https://www.encodeproject.org/files/ENCFF004NBT/@@download/ENCFF004NBT.bam hg19 released antibody characterized with exemption missing control alignments ENCFF997UGV bam alignments ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF071FDH, ENCFF643CGH, ENCFF950IWA 3415674245 ENCODE Processing Pipeline 35c9165d6c53387b55746956822b78e7 https://www.encodeproject.org/files/ENCFF997UGV/@@download/ENCFF997UGV.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF983YSM bam alignments ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF071FDH, ENCFF807MUK, ENCFF950IWA 3412522816 ENCODE Processing Pipeline 860524ece3c39808668a3e45c6f1c6c1 https://www.encodeproject.org/files/ENCFF983YSM/@@download/ENCFF983YSM.bam hg19 released antibody characterized with exemption missing control alignments ENCFF743ZCR bigWig signal p-value ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF997UGV 1327119434 ENCODE Processing Pipeline 7f8f38fc0f46ce6ce1252e8c9fef0f77 https://www.encodeproject.org/files/ENCFF743ZCR/@@download/ENCFF743ZCR.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF503NAW bed narrowPeak peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF997UGV 6458128 ENCODE Processing Pipeline 8b19092b4eaf3495453b34b0a3a2ca6b https://www.encodeproject.org/files/ENCFF503NAW/@@download/ENCFF503NAW.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF806MYT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF469SGL 258845 ENCODE Processing Pipeline 2705070e609d4adc283bd9bb2b466c1a https://www.encodeproject.org/files/ENCFF806MYT/@@download/ENCFF806MYT.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF429UPL bigWig fold change over control ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF997UGV 1158128145 ENCODE Processing Pipeline de7e273158f2dae51f157453234c3445 https://www.encodeproject.org/files/ENCFF429UPL/@@download/ENCFF429UPL.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF083OYL bigBed narrowPeak peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF503NAW 11276525 ENCODE Processing Pipeline 8e75df1527fdcf9e8f17d5fa27cf918f https://www.encodeproject.org/files/ENCFF083OYL/@@download/ENCFF083OYL.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF469SGL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF503NAW 106388 ENCODE Processing Pipeline 1e0153d9b1b3b432b8b392f0c1b45a75 https://www.encodeproject.org/files/ENCFF469SGL/@@download/ENCFF469SGL.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF943ARA bigWig signal p-value ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF983YSM 1092343351 ENCODE Processing Pipeline 8103ff813e3b76f1275732ada69fbcfa https://www.encodeproject.org/files/ENCFF943ARA/@@download/ENCFF943ARA.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF957SWT bigWig fold change over control ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF983YSM 1146537691 ENCODE Processing Pipeline 3ec3c63bc738588643036ae40afef6e4 https://www.encodeproject.org/files/ENCFF957SWT/@@download/ENCFF957SWT.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF215GON bigBed narrowPeak peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF506XWQ 11270184 ENCODE Processing Pipeline c895ab6d523bf6a912ba3317bd040730 https://www.encodeproject.org/files/ENCFF215GON/@@download/ENCFF215GON.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF506XWQ bed narrowPeak peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF983YSM 6431186 ENCODE Processing Pipeline 987169f530e84dbad71415b43f57d6fc https://www.encodeproject.org/files/ENCFF506XWQ/@@download/ENCFF506XWQ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF887XGB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF506XWQ 105193 ENCODE Processing Pipeline 2b29a3f7a0da82a5ccf7a9600485571f https://www.encodeproject.org/files/ENCFF887XGB/@@download/ENCFF887XGB.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF805NBE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF887XGB 255004 ENCODE Processing Pipeline 16f7ddc93d1c81a1b51f1224004d12e9 https://www.encodeproject.org/files/ENCFF805NBE/@@download/ENCFF805NBE.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF000YJH bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 1 294370705 Michael Snyder, Stanford a3d58f4f07b8cdb69dafdbaff9cf1091 https://www.encodeproject.org/files/ENCFF000YJH/@@download/ENCFF000YJH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YJI bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VMO 653997 Michael Snyder, Stanford db80ea6cbca9bee5ffc536b5e73d00ef https://www.encodeproject.org/files/ENCFF000YJI/@@download/ENCFF000YJI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YJJ fastq reads ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 527982670 Michael Snyder, Stanford 61e147d9835975ecee8864c9c1fbcc64 https://www.encodeproject.org/files/ENCFF000YJJ/@@download/ENCFF000YJJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YJL fastq reads ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1010854208 Michael Snyder, Stanford 32d7cfc6544c4cc8019ed2924bbb310f https://www.encodeproject.org/files/ENCFF000YJL/@@download/ENCFF000YJL.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YJN bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 1 563176062 Michael Snyder, Stanford d9991d950657dbeb79d541c323f75753 https://www.encodeproject.org/files/ENCFF000YJN/@@download/ENCFF000YJN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000YJO bigWig signal ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 438321992 Michael Snyder, Stanford 854deaa233936d192186cf5722f10587 https://www.encodeproject.org/files/ENCFF000YJO/@@download/ENCFF000YJO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001VMO bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 350531 Michael Snyder, Stanford e66b2414940814db9b3349c7870d8629 https://www.encodeproject.org/files/ENCFF001VMO/@@download/ENCFF001VMO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF156KMN bam unfiltered alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YJJ, ENCFF643CGH 596459744 ENCODE Processing Pipeline fb18c23525dece2b814e935ab580f303 https://www.encodeproject.org/files/ENCFF156KMN/@@download/ENCFF156KMN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF924CYX bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YJJ, ENCFF643CGH 383729217 ENCODE Processing Pipeline f6e958af6300874e8abd8a696b6601b2 https://www.encodeproject.org/files/ENCFF924CYX/@@download/ENCFF924CYX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF014UUB bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YJL, ENCFF643CGH 764029946 ENCODE Processing Pipeline 40819714f4f7c7a674ca20ad47665494 https://www.encodeproject.org/files/ENCFF014UUB/@@download/ENCFF014UUB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF253URQ bam unfiltered alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YJL, ENCFF643CGH 1146987348 ENCODE Processing Pipeline 71a62eda5f36978b47c26033b886d70a https://www.encodeproject.org/files/ENCFF253URQ/@@download/ENCFF253URQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF328OFF bam unfiltered alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YJJ, ENCFF807MUK 594328831 ENCODE Processing Pipeline 1997e71c2cfff43926be1db7d61196da https://www.encodeproject.org/files/ENCFF328OFF/@@download/ENCFF328OFF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF703KIU bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YJJ, ENCFF807MUK 384094779 ENCODE Processing Pipeline 5546b500bf8a0b4c4f3b5d0096f3fca9 https://www.encodeproject.org/files/ENCFF703KIU/@@download/ENCFF703KIU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF235CXC bam unfiltered alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YJL, ENCFF807MUK 1142441169 ENCODE Processing Pipeline ee3e0211a4d8d574d087f6f8ac869508 https://www.encodeproject.org/files/ENCFF235CXC/@@download/ENCFF235CXC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF738IAS bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YJL, ENCFF807MUK 764612357 ENCODE Processing Pipeline b78153f4ba56ddec01f6e07ea21e5127 https://www.encodeproject.org/files/ENCFF738IAS/@@download/ENCFF738IAS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF243LNJ bigWig signal p-value ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF014UUB, ENCFF924CYX 546315148 ENCODE Processing Pipeline 9e35b07e9f115e1c3bcb6586a748bfeb https://www.encodeproject.org/files/ENCFF243LNJ/@@download/ENCFF243LNJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF242EWA bigWig signal p-value ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF924CYX 460446198 ENCODE Processing Pipeline 44c76e8016795d141edbc9dce696ec4e https://www.encodeproject.org/files/ENCFF242EWA/@@download/ENCFF242EWA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF812WJT bigWig signal p-value ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF014UUB 551439365 ENCODE Processing Pipeline 81e937553d1043d81c6f11f2afb89071 https://www.encodeproject.org/files/ENCFF812WJT/@@download/ENCFF812WJT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF957HFI bigWig fold change over control ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF924CYX 231607048 ENCODE Processing Pipeline e0517678eab7976b76ed1341ab8de714 https://www.encodeproject.org/files/ENCFF957HFI/@@download/ENCFF957HFI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF361SMB bigWig fold change over control ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF014UUB 397983436 ENCODE Processing Pipeline 5b7ecb6cbbc5215f0722f298609c6528 https://www.encodeproject.org/files/ENCFF361SMB/@@download/ENCFF361SMB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF345MES bigWig fold change over control ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF014UUB, ENCFF924CYX 540365814 ENCODE Processing Pipeline e7ce1569d881fa656fe1f0f75dd6e130 https://www.encodeproject.org/files/ENCFF345MES/@@download/ENCFF345MES.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF893YYD bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF014UUB 5228944 ENCODE Processing Pipeline 95259a286a0a8358008c223187239071 https://www.encodeproject.org/files/ENCFF893YYD/@@download/ENCFF893YYD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF283XPJ bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF014UUB, ENCFF924CYX 5555132 ENCODE Processing Pipeline 719c93766b8b27b1d92f3a5466fad215 https://www.encodeproject.org/files/ENCFF283XPJ/@@download/ENCFF283XPJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF543MHK bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF924CYX 4246322 ENCODE Processing Pipeline 7ee72642b31d088f8dcf6eddce06bd86 https://www.encodeproject.org/files/ENCFF543MHK/@@download/ENCFF543MHK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF804LZH bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF543MHK 10183411 ENCODE Processing Pipeline 55b1aa6b57afedde0f1102627a577488 https://www.encodeproject.org/files/ENCFF804LZH/@@download/ENCFF804LZH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF688WGA bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF283XPJ 13273155 ENCODE Processing Pipeline 5c7669e5abec5f02473f27b0671b1bc5 https://www.encodeproject.org/files/ENCFF688WGA/@@download/ENCFF688WGA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF905NMP bed narrowPeak conservative idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF283XPJ, ENCFF419RSJ, ENCFF543MHK, ENCFF893YYD 323656 ENCODE Processing Pipeline 7f529c720d838d577a0be11df6b0d4b0 https://www.encodeproject.org/files/ENCFF905NMP/@@download/ENCFF905NMP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF478EFX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF905NMP 587389 ENCODE Processing Pipeline 8f2050aba35754d8dea3f6a10e12cb16 https://www.encodeproject.org/files/ENCFF478EFX/@@download/ENCFF478EFX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF976GWT bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF893YYD 11000573 ENCODE Processing Pipeline 872499155b487985aee15d903c9fd6a5 https://www.encodeproject.org/files/ENCFF976GWT/@@download/ENCFF976GWT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF394CEC bed narrowPeak optimal idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF283XPJ, ENCFF419RSJ, ENCFF543MHK, ENCFF893YYD 386163 ENCODE Processing Pipeline a4d1eaceaadf0a4371abbf9afa089c69 https://www.encodeproject.org/files/ENCFF394CEC/@@download/ENCFF394CEC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF866AII bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF394CEC 671056 ENCODE Processing Pipeline 4eb4c3ec5522cfa9e63f8c1a6082fcef https://www.encodeproject.org/files/ENCFF866AII/@@download/ENCFF866AII.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF106VGF bigWig fold change over control ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF738IAS 398942051 ENCODE Processing Pipeline 9250d5ba14e55b490849b5b1a707f3a9 https://www.encodeproject.org/files/ENCFF106VGF/@@download/ENCFF106VGF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF400UDO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF629BFI 674632 ENCODE Processing Pipeline 1195e405e0202df90b8f1762d792dce7 https://www.encodeproject.org/files/ENCFF400UDO/@@download/ENCFF400UDO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF476UKJ bigWig signal p-value ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF703KIU, ENCFF710NTS 346048934 ENCODE Processing Pipeline 29c5c958296a3bd8d5fb337ffd1eadee https://www.encodeproject.org/files/ENCFF476UKJ/@@download/ENCFF476UKJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF722NGA bigWig fold change over control ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF703KIU, ENCFF710NTS 227811759 ENCODE Processing Pipeline db6fa4be8984deb0faa9b3f6edc16101 https://www.encodeproject.org/files/ENCFF722NGA/@@download/ENCFF722NGA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF422SBX bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF703KIU, ENCFF710NTS, ENCFF738IAS 5558042 ENCODE Processing Pipeline 49411d81e4a5c39155fc0169c59744dc https://www.encodeproject.org/files/ENCFF422SBX/@@download/ENCFF422SBX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF088VCF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF934OCU 586842 ENCODE Processing Pipeline 015732860ba9f3943011a380dd55cc8d https://www.encodeproject.org/files/ENCFF088VCF/@@download/ENCFF088VCF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF019RFT bigWig signal p-value ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF738IAS 493381811 ENCODE Processing Pipeline 5e95bb5979ec24360192f6688e054c0b https://www.encodeproject.org/files/ENCFF019RFT/@@download/ENCFF019RFT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF780KHA bigWig fold change over control ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF703KIU, ENCFF710NTS, ENCFF738IAS 543914751 ENCODE Processing Pipeline 3bb358da28c1e878f1bc1c3e71212a45 https://www.encodeproject.org/files/ENCFF780KHA/@@download/ENCFF780KHA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF596KVH bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF703KIU, ENCFF710NTS 4250099 ENCODE Processing Pipeline 25bcfe841e4379e12213ec46fd0af751 https://www.encodeproject.org/files/ENCFF596KVH/@@download/ENCFF596KVH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF182AWR bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF738IAS 5260689 ENCODE Processing Pipeline 0d7bb4ba36aaaddc656d121e2b42a299 https://www.encodeproject.org/files/ENCFF182AWR/@@download/ENCFF182AWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF678MJZ bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF596KVH 10185630 ENCODE Processing Pipeline e90d1e08dab4bc4b2f294df5648871f2 https://www.encodeproject.org/files/ENCFF678MJZ/@@download/ENCFF678MJZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF554TLT bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF182AWR 10989998 ENCODE Processing Pipeline b6740525c65611aedfd57114209ab5db https://www.encodeproject.org/files/ENCFF554TLT/@@download/ENCFF554TLT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF692BOZ bigWig signal p-value ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF703KIU, ENCFF710NTS, ENCFF738IAS 577667216 ENCODE Processing Pipeline ff20ff8130fdbbf85b3992f90f68c783 https://www.encodeproject.org/files/ENCFF692BOZ/@@download/ENCFF692BOZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF946YTQ bigBed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF422SBX 13268352 ENCODE Processing Pipeline dae5202f899eb014a431eec60ec62460 https://www.encodeproject.org/files/ENCFF946YTQ/@@download/ENCFF946YTQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF934OCU bed narrowPeak conservative idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF182AWR, ENCFF422SBX, ENCFF596KVH 323642 ENCODE Processing Pipeline 733c5bf2090a74744daa6518bba115a5 https://www.encodeproject.org/files/ENCFF934OCU/@@download/ENCFF934OCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF629BFI bed narrowPeak optimal idr thresholded peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF182AWR, ENCFF422SBX, ENCFF596KVH 388538 ENCODE Processing Pipeline 5ebab0cfbc3b0ee3b78931c4d1edd480 https://www.encodeproject.org/files/ENCFF629BFI/@@download/ENCFF629BFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000YED bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VLU 2947298 Michael Snyder, Stanford 67329231d2077c5f6ed4af3e35e003ec https://www.encodeproject.org/files/ENCFF000YED/@@download/ENCFF000YED.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YEE fastq reads ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 998511796 Michael Snyder, Stanford 6bc65dca9d576e2d906c4137fcdf1edb https://www.encodeproject.org/files/ENCFF000YEE/@@download/ENCFF000YEE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCQ/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YEG fastq reads ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1155470064 Michael Snyder, Stanford 3e7cd92fa0dc9ada1da548326e611861 https://www.encodeproject.org/files/ENCFF000YEG/@@download/ENCFF000YEG.fastq.gz Illumina Genome Analyzer /files/ENCFF000YCS/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YEI bigWig signal ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 413797822 Michael Snyder, Stanford 04e22560755cec8e078fb1655c02d818 https://www.encodeproject.org/files/ENCFF000YEI/@@download/ENCFF000YEI.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YEJ bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 1 544898723 Michael Snyder, Stanford b11475be16d767a80406d0ab45757d2b https://www.encodeproject.org/files/ENCFF000YEJ/@@download/ENCFF000YEJ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YEK bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 1 617095839 Michael Snyder, Stanford c7831ef67d475b7864553e09eedaf9fe https://www.encodeproject.org/files/ENCFF000YEK/@@download/ENCFF000YEK.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VLU bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1149142 Michael Snyder, Stanford 13dd5001dd1af9d65091c3e47bd2a017 https://www.encodeproject.org/files/ENCFF001VLU/@@download/ENCFF001VLU.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CVK bed narrowPeak optimal idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 832534 ENCODE Consortium Analysis Working Group 575dc86072845c353a9146d296e3812f https://www.encodeproject.org/files/ENCFF002CVK/@@download/ENCFF002CVK.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF169VHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CVK 1818657 ENCODE Consortium 2d6ac26f4da5335556c5f16d5ac73449 https://www.encodeproject.org/files/ENCFF169VHC/@@download/ENCFF169VHC.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF638RTQ bam unfiltered alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEE, ENCFF643CGH 1092537797 ENCODE Processing Pipeline b2c0a8189d21c889847130dcff1876c4 https://www.encodeproject.org/files/ENCFF638RTQ/@@download/ENCFF638RTQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF753ECA bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEE, ENCFF643CGH 768607465 ENCODE Processing Pipeline c0dc7255bd96464d7c400435e05ea65e https://www.encodeproject.org/files/ENCFF753ECA/@@download/ENCFF753ECA.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF238XQT bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEG, ENCFF643CGH 867667549 ENCODE Processing Pipeline a728d169e33738324980eaa8b71f3a19 https://www.encodeproject.org/files/ENCFF238XQT/@@download/ENCFF238XQT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF271HSG bam unfiltered alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEG, ENCFF643CGH 1288821926 ENCODE Processing Pipeline be6ed8ee73a8cb97aed3a17e9bde0e0a https://www.encodeproject.org/files/ENCFF271HSG/@@download/ENCFF271HSG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF924BHS bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEG, ENCFF807MUK 868086153 ENCODE Processing Pipeline 0d43d7455ce839dc37ed3a646924f5f9 https://www.encodeproject.org/files/ENCFF924BHS/@@download/ENCFF924BHS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF663RKW bam unfiltered alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEE, ENCFF807MUK 1088478026 ENCODE Processing Pipeline a5f1b62a7e202db24bb0088ddd4c34f5 https://www.encodeproject.org/files/ENCFF663RKW/@@download/ENCFF663RKW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279TIW bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEE, ENCFF807MUK 768969297 ENCODE Processing Pipeline 36333f5b7aa89e7f35ab9bd7d9949936 https://www.encodeproject.org/files/ENCFF279TIW/@@download/ENCFF279TIW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF560BRT bam unfiltered alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEG, ENCFF807MUK 1283449757 ENCODE Processing Pipeline 1eb7e58b6215a50e46ef5b41c8cd3242 https://www.encodeproject.org/files/ENCFF560BRT/@@download/ENCFF560BRT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF597FBQ bigWig signal p-value ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF753ECA, ENCFF823WOO 731026699 ENCODE Processing Pipeline 1c44a22af3199a00a8b212acd9278b4d https://www.encodeproject.org/files/ENCFF597FBQ/@@download/ENCFF597FBQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF626OLO bigWig signal p-value ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF238XQT, ENCFF494UKO, ENCFF753ECA, ENCFF823WOO 892828115 ENCODE Processing Pipeline 691405a999b16c043bbc6ed2e17aad9e https://www.encodeproject.org/files/ENCFF626OLO/@@download/ENCFF626OLO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF443IZU bigWig fold change over control ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF753ECA, ENCFF823WOO 473647786 ENCODE Processing Pipeline 46ff2d0f7559a7976c118668dfc9ffd4 https://www.encodeproject.org/files/ENCFF443IZU/@@download/ENCFF443IZU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF298BFT bigWig signal p-value ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF238XQT, ENCFF494UKO, ENCFF823WOO 670836252 ENCODE Processing Pipeline c8f0eb76feabcc00304c7bae9130f16e https://www.encodeproject.org/files/ENCFF298BFT/@@download/ENCFF298BFT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF879GKM bigWig fold change over control ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF238XQT, ENCFF494UKO, ENCFF753ECA, ENCFF823WOO 841767625 ENCODE Processing Pipeline b93933ea2b4b5f318977303765ddf3f3 https://www.encodeproject.org/files/ENCFF879GKM/@@download/ENCFF879GKM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF241XYE bigWig fold change over control ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF238XQT, ENCFF494UKO, ENCFF823WOO 545094650 ENCODE Processing Pipeline 1a21f14c940f34fafa6a5c2af30fe2c4 https://www.encodeproject.org/files/ENCFF241XYE/@@download/ENCFF241XYE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198LGV bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF561NWA 11426137 ENCODE Processing Pipeline e5088c39945ec474b8fadfe7ccbc49c0 https://www.encodeproject.org/files/ENCFF198LGV/@@download/ENCFF198LGV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF642DTY bed narrowPeak conservative idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF072PGT, ENCFF138KEH, ENCFF419RSJ, ENCFF561NWA 649913 ENCODE Processing Pipeline 1576b0e2e8d5073f638be1cd4d8cdde6 https://www.encodeproject.org/files/ENCFF642DTY/@@download/ENCFF642DTY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF561NWA bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF494UKO, ENCFF753ECA, ENCFF823WOO 5259048 ENCODE Processing Pipeline a77fe985300fe5796b00a83aa261bb9b https://www.encodeproject.org/files/ENCFF561NWA/@@download/ENCFF561NWA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF072PGT bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF238XQT, ENCFF494UKO, ENCFF823WOO 5134908 ENCODE Processing Pipeline 57fd0f0ebe3101ab17b787fe83ff4e3c https://www.encodeproject.org/files/ENCFF072PGT/@@download/ENCFF072PGT.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138KEH bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF238XQT, ENCFF494UKO, ENCFF753ECA, ENCFF823WOO 5897066 ENCODE Processing Pipeline c82e580acc597e03f7336d4ca26354d9 https://www.encodeproject.org/files/ENCFF138KEH/@@download/ENCFF138KEH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500CFP bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF138KEH 11861679 ENCODE Processing Pipeline 1ffdb0ea252c84adedeb6a2308406807 https://www.encodeproject.org/files/ENCFF500CFP/@@download/ENCFF500CFP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF719FSK bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF072PGT 11512773 ENCODE Processing Pipeline 173160be83f0b4f4547ccf0077791dcd https://www.encodeproject.org/files/ENCFF719FSK/@@download/ENCFF719FSK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF895JAW bed narrowPeak optimal idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF072PGT, ENCFF138KEH, ENCFF419RSJ, ENCFF561NWA 699619 ENCODE Processing Pipeline b504932fded0f25a013dadcafb1bb4c9 https://www.encodeproject.org/files/ENCFF895JAW/@@download/ENCFF895JAW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF866LXU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF895JAW 1300980 ENCODE Processing Pipeline cdfad5d906862baa931baf33992f973e https://www.encodeproject.org/files/ENCFF866LXU/@@download/ENCFF866LXU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF087JJO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF642DTY 1234065 ENCODE Processing Pipeline 983c522a83c19f9b14300344a0ba561b https://www.encodeproject.org/files/ENCFF087JJO/@@download/ENCFF087JJO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF837IEN bigWig signal p-value ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG 662366743 ENCODE Processing Pipeline edf385d9db06735630bb4f3da2b2ab13 https://www.encodeproject.org/files/ENCFF837IEN/@@download/ENCFF837IEN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF975AHK bigWig signal p-value ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF924BHS 773648262 ENCODE Processing Pipeline 6740b1f0cac46652bf1d8237fd373013 https://www.encodeproject.org/files/ENCFF975AHK/@@download/ENCFF975AHK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF603SRS bigWig fold change over control ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG, ENCFF924BHS 843134078 ENCODE Processing Pipeline 4b7a29f75d9b8f09dd9ef7a7206159c4 https://www.encodeproject.org/files/ENCFF603SRS/@@download/ENCFF603SRS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF544XWE bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF731ASC 11507783 ENCODE Processing Pipeline 7701dac6fd8da81cae7dd2c028525c9a https://www.encodeproject.org/files/ENCFF544XWE/@@download/ENCFF544XWE.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198IAG bed narrowPeak conservative idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF058CVP, ENCFF263ADC, ENCFF731ASC 648940 ENCODE Processing Pipeline 3604c760608377d9ba8e7ba72d90c7fb https://www.encodeproject.org/files/ENCFF198IAG/@@download/ENCFF198IAG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF876IZF bigWig fold change over control ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG 474525294 ENCODE Processing Pipeline e5172a7403248350b994b7db6e57436c https://www.encodeproject.org/files/ENCFF876IZF/@@download/ENCFF876IZF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361KJB bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF263ADC 11428058 ENCODE Processing Pipeline 1d1ce88a8bac9d6e6efa5f6104fb0909 https://www.encodeproject.org/files/ENCFF361KJB/@@download/ENCFF361KJB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF900QQL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF195CYT 1302376 ENCODE Processing Pipeline 7b1e7c7238decf319de63213e2eb4358 https://www.encodeproject.org/files/ENCFF900QQL/@@download/ENCFF900QQL.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF731ASC bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF924BHS 5137571 ENCODE Processing Pipeline 70c6919ebd76472f12d1a27c903162d1 https://www.encodeproject.org/files/ENCFF731ASC/@@download/ENCFF731ASC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF115RIK bigWig signal p-value ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG, ENCFF924BHS 893274934 ENCODE Processing Pipeline cc47618b819d6ae7b96cf623e3ccda49 https://www.encodeproject.org/files/ENCFF115RIK/@@download/ENCFF115RIK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF671FWJ bigBed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF058CVP 11858502 ENCODE Processing Pipeline 25463640c83363235545845c69cb5999 https://www.encodeproject.org/files/ENCFF671FWJ/@@download/ENCFF671FWJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713ERB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF198IAG 1232379 ENCODE Processing Pipeline a1ec692081ddb4982a518f2f32acd622 https://www.encodeproject.org/files/ENCFF713ERB/@@download/ENCFF713ERB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF195CYT bed narrowPeak optimal idr thresholded peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF058CVP, ENCFF263ADC, ENCFF731ASC 701358 ENCODE Processing Pipeline 4d3907a2d16dc9294acca25831c73b27 https://www.encodeproject.org/files/ENCFF195CYT/@@download/ENCFF195CYT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF263ADC bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG 5262024 ENCODE Processing Pipeline 6a22bc02bdba44937419fc7fe2baf9e6 https://www.encodeproject.org/files/ENCFF263ADC/@@download/ENCFF263ADC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF902HPH bigWig fold change over control ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF924BHS 541397615 ENCODE Processing Pipeline 14e4e89e06f743a53af2230c8c5297f3 https://www.encodeproject.org/files/ENCFF902HPH/@@download/ENCFF902HPH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF058CVP bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG, ENCFF924BHS 5897192 ENCODE Processing Pipeline a9552ff81ba4c7e28821700320ff731e https://www.encodeproject.org/files/ENCFF058CVP/@@download/ENCFF058CVP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XEF bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XER 329111657 Michael Snyder, Stanford 1e38de407185ed7e57642e3a2f392aba https://www.encodeproject.org/files/ENCFF000XEF/@@download/ENCFF000XEF.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XEG bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XFC 389522374 Michael Snyder, Stanford 71953d24b9975e8037ff8c85b9bad264 https://www.encodeproject.org/files/ENCFF000XEG/@@download/ENCFF000XEG.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XEH bigBed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIL 1738039 Michael Snyder, Stanford 7f569da854e3f0be15338b36666e5eed https://www.encodeproject.org/files/ENCFF000XEH/@@download/ENCFF000XEH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XEL bigWig signal ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 265263212 Michael Snyder, Stanford f7e8b16f1be4771dfba3024ddf35551f https://www.encodeproject.org/files/ENCFF000XEL/@@download/ENCFF000XEL.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XER fastq reads ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 866466626 Michael Snyder, Stanford 1946b5a58846b4e4371d37b2784e3728 https://www.encodeproject.org/files/ENCFF000XER/@@download/ENCFF000XER.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XFC fastq reads ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1109924271 Michael Snyder, Stanford 8b17c265c468b7ac6b223ef7339f8e88 https://www.encodeproject.org/files/ENCFF000XFC/@@download/ENCFF000XFC.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VIL bed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 651349 Michael Snyder, Stanford ed57805e321ff2d73e1f892cf6049690 https://www.encodeproject.org/files/ENCFF001VIL/@@download/ENCFF001VIL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CSL bed narrowPeak optimal idr thresholded peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 302946 ENCODE Consortium Analysis Working Group 6bb4c8493a3be44ede2ce45814c7c621 https://www.encodeproject.org/files/ENCFF002CSL/@@download/ENCFF002CSL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF046YAO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSL 777383 ENCODE Consortium 5a2fbc718822906a4483f3f74547e449 https://www.encodeproject.org/files/ENCFF046YAO/@@download/ENCFF046YAO.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818YBT bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XER, ENCFF643CGH 509735140 ENCODE Processing Pipeline ef17b141a24747810d8c97e83f048da8 https://www.encodeproject.org/files/ENCFF818YBT/@@download/ENCFF818YBT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF929BHR bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XFC, ENCFF643CGH 540962628 ENCODE Processing Pipeline 0c76978b12243463dfb024cd030ade78 https://www.encodeproject.org/files/ENCFF929BHR/@@download/ENCFF929BHR.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF578OTQ bam unfiltered alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XFC, ENCFF643CGH 1127813532 ENCODE Processing Pipeline 98487801b72821593d561111ae591323 https://www.encodeproject.org/files/ENCFF578OTQ/@@download/ENCFF578OTQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF749ZUR bam unfiltered alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XER, ENCFF643CGH 927931081 ENCODE Processing Pipeline 5752d3ae84515991b353cea6d0c10fd7 https://www.encodeproject.org/files/ENCFF749ZUR/@@download/ENCFF749ZUR.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF629GGI bigWig signal p-value ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436WVQ, ENCFF818YBT 433214505 ENCODE Processing Pipeline 380839d743999f7c66fc18c58cac5b78 https://www.encodeproject.org/files/ENCFF629GGI/@@download/ENCFF629GGI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF215NPF bigWig fold change over control ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436WVQ, ENCFF818YBT 307767009 ENCODE Processing Pipeline 52215bf1d34ff8d936b98719b616d594 https://www.encodeproject.org/files/ENCFF215NPF/@@download/ENCFF215NPF.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780LQC bed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436WVQ, ENCFF818YBT, ENCFF929BHR 6219640 ENCODE Processing Pipeline af618eff792a92c3cc1c7e270fa28015 https://www.encodeproject.org/files/ENCFF780LQC/@@download/ENCFF780LQC.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF455OBS bigWig fold change over control ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436WVQ, ENCFF929BHR 332029537 ENCODE Processing Pipeline 603ea5e2065a4e9b35ffe8f078e72d3c https://www.encodeproject.org/files/ENCFF455OBS/@@download/ENCFF455OBS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357QFZ bed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436WVQ, ENCFF818YBT 5709914 ENCODE Processing Pipeline 5d976cf8f602c4257f610b9020cb2f33 https://www.encodeproject.org/files/ENCFF357QFZ/@@download/ENCFF357QFZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF486EDR bed narrowPeak conservative idr thresholded peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF357QFZ, ENCFF419RSJ, ENCFF780LQC, ENCFF822CIJ 271589 ENCODE Processing Pipeline 5ec87f1cc6b2c8e59a3650d5070c5163 https://www.encodeproject.org/files/ENCFF486EDR/@@download/ENCFF486EDR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF637LQS bigWig fold change over control ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436WVQ, ENCFF818YBT, ENCFF929BHR 566965259 ENCODE Processing Pipeline 6413a97bd6cc3e6127e9b1401a146c9f https://www.encodeproject.org/files/ENCFF637LQS/@@download/ENCFF637LQS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF920LXT bigBed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF780LQC 13313587 ENCODE Processing Pipeline 39cac63710cdd117d51835dd8fd1a5c7 https://www.encodeproject.org/files/ENCFF920LXT/@@download/ENCFF920LXT.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620ZHV bigWig signal p-value ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436WVQ, ENCFF929BHR 420737349 ENCODE Processing Pipeline 1013d887eca6e4103b330fecd83f4955 https://www.encodeproject.org/files/ENCFF620ZHV/@@download/ENCFF620ZHV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF326HGA bigWig signal p-value ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436WVQ, ENCFF818YBT, ENCFF929BHR 597618428 ENCODE Processing Pipeline ad54da40735fe3bd9727fc6dfe775630 https://www.encodeproject.org/files/ENCFF326HGA/@@download/ENCFF326HGA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF822CIJ bed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436WVQ, ENCFF929BHR 5301405 ENCODE Processing Pipeline 0350e26ecd6fdf050398c444b7820613 https://www.encodeproject.org/files/ENCFF822CIJ/@@download/ENCFF822CIJ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF341ZHV bigBed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF357QFZ 13090933 ENCODE Processing Pipeline a50a0d832e6e95c5234db91404340bf3 https://www.encodeproject.org/files/ENCFF341ZHV/@@download/ENCFF341ZHV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF945NJN bigBed narrowPeak peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF822CIJ 13245425 ENCODE Processing Pipeline 8aebbc85d755622e2c3cc1b81067d683 https://www.encodeproject.org/files/ENCFF945NJN/@@download/ENCFF945NJN.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF394JHN bed narrowPeak optimal idr thresholded peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF357QFZ, ENCFF419RSJ, ENCFF780LQC, ENCFF822CIJ 318800 ENCODE Processing Pipeline 7173d34dedd7f967349bd3a15a03b074 https://www.encodeproject.org/files/ENCFF394JHN/@@download/ENCFF394JHN.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF341ZYY bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF486EDR 564887 ENCODE Processing Pipeline 1ed6ccc1a1b9267781cfc8b83f2ef730 https://www.encodeproject.org/files/ENCFF341ZYY/@@download/ENCFF341ZYY.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF167PPG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF394JHN 640702 ENCODE Processing Pipeline 7419d2e4ea9e91cc2139e6fff707c54b https://www.encodeproject.org/files/ENCFF167PPG/@@download/ENCFF167PPG.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MWW bam alignments ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000MXH 1413267251 Richard Myers, HAIB 8edfc9d56a5fd3b80f79bf6b8c9a1558 https://www.encodeproject.org/files/ENCFF000MWW/@@download/ENCFF000MWW.bam hg19 released biological replicates with identical biosample ENCFF000MWX bigBed broadPeak peaks ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TRO 642528 Richard Myers, HAIB 3f1804123e8a0778f888bf08bf5a1c84 https://www.encodeproject.org/files/ENCFF000MWX/@@download/ENCFF000MWX.bigBed hg19 released biological replicates with identical biosample ENCFF000MWY bam alignments ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000MXK 1521618214 Richard Myers, HAIB 12a1364936adaafad3a8adcba9edc487 https://www.encodeproject.org/files/ENCFF000MWY/@@download/ENCFF000MWY.bam hg19 released biological replicates with identical biosample ENCFF000MWZ bigBed broadPeak peaks ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TRP 496603 Richard Myers, HAIB f8b546362be894c9a54287d2eec34f6f https://www.encodeproject.org/files/ENCFF000MWZ/@@download/ENCFF000MWZ.bigBed hg19 released biological replicates with identical biosample ENCFF000MXA bigWig raw signal ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 221661279 Richard Myers, HAIB 7844e7deef0fb24056cd617bb89ccf3b https://www.encodeproject.org/files/ENCFF000MXA/@@download/ENCFF000MXA.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000MXB bigWig raw signal ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 147577976 Richard Myers, HAIB fe3d656a4d4c1bfe8fdbc0590dc29c75 https://www.encodeproject.org/files/ENCFF000MXB/@@download/ENCFF000MXB.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000MXH fastq reads ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1435745513 Richard Myers, HAIB c3c0d1832561e8cdae0ff0b50ecc6693 https://www.encodeproject.org/files/ENCFF000MXH/@@download/ENCFF000MXH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGK/ released biological replicates with identical biosample ENCFF000MXK fastq reads ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1575856351 Richard Myers, HAIB 567a0fe2bcc8989ceb4c9dbb0cd3b75c https://www.encodeproject.org/files/ENCFF000MXK/@@download/ENCFF000MXK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NGN/ released biological replicates with identical biosample ENCFF001TRO bed broadPeak peaks ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 1 412011 Richard Myers, HAIB 048980e3bb18a99d87d004a90bf5bfa7 https://www.encodeproject.org/files/ENCFF001TRO/@@download/ENCFF001TRO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001TRP bed broadPeak peaks ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 1 253680 Richard Myers, HAIB 985e3827d504c369167bba0078c744d5 https://www.encodeproject.org/files/ENCFF001TRP/@@download/ENCFF001TRP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OBJ bam alignments ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OBU 1348804394 Richard Myers, HAIB b160ac79cbc69e3e2856b58214fcc121 https://www.encodeproject.org/files/ENCFF000OBJ/@@download/ENCFF000OBJ.bam hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF000OBM bigBed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYO 1429056 Richard Myers, HAIB 7fb9ae25944056d7cfec511929df5b49 https://www.encodeproject.org/files/ENCFF000OBM/@@download/ENCFF000OBM.bigBed hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF000OBN bigBed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 ENCFF001TYP 544986 Richard Myers, HAIB c9ea5e31515538547f8a9efc5ecbd6ed https://www.encodeproject.org/files/ENCFF000OBN/@@download/ENCFF000OBN.bigBed hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF000OBO bam alignments ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 ENCFF000OBS 1327495223 Richard Myers, HAIB b6ae67932f7c18b76a9a2accd83b3d92 https://www.encodeproject.org/files/ENCFF000OBO/@@download/ENCFF000OBO.bam hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF000OBR bigWig raw signal ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 61477882 Richard Myers, HAIB cd9d169d7651312a3383d08f92321e38 https://www.encodeproject.org/files/ENCFF000OBR/@@download/ENCFF000OBR.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from, missing raw data in replicate ENCFF000OBS fastq reads ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 36 single-ended 1195999211 Richard Myers, HAIB b8d99ff7f031394dc3d6fd11fa094c2e https://www.encodeproject.org/files/ENCFF000OBS/@@download/ENCFF000OBS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCS/ released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF000OBT bigWig raw signal ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 23509883 Richard Myers, HAIB 97ec220d090f50d15d135aa02377f8a8 https://www.encodeproject.org/files/ENCFF000OBT/@@download/ENCFF000OBT.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from, missing raw data in replicate ENCFF000OBU fastq reads ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1764589631 Richard Myers, HAIB a61eda5b147d4dd248268f03d9b8bd8c https://www.encodeproject.org/files/ENCFF000OBU/@@download/ENCFF000OBU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF001TYO bed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 974658 Richard Myers, HAIB 84c669ce29565315b92ab9604490355d https://www.encodeproject.org/files/ENCFF001TYO/@@download/ENCFF001TYO.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample, missing raw data in replicate ENCFF001TYP bed broadPeak peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 1 325787 Richard Myers, HAIB 72b36449490e770930adf38efa64ed68 https://www.encodeproject.org/files/ENCFF001TYP/@@download/ENCFF001TYP.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample, missing raw data in replicate ENCFF002CHQ bed narrowPeak optimal idr thresholded peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 898654 ENCODE Consortium Analysis Working Group 7bfcaceb2634fd60e68d9c6730a55f7b https://www.encodeproject.org/files/ENCFF002CHQ/@@download/ENCFF002CHQ.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from, missing raw data in replicate ENCFF819BRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHQ 1895900 ENCODE Consortium 4fad0855a33855c38ddaa72391650d8e https://www.encodeproject.org/files/ENCFF819BRD/@@download/ENCFF819BRD.bigBed hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF215BBJ fastq reads ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF023HVW 2335143682 Michael Snyder, Stanford a0b77e72dbbe713e53a42393f4286413 SRA:SRR6213090 https://www.encodeproject.org/files/ENCFF215BBJ/@@download/ENCFF215BBJ.fastq.gz Illumina HiSeq 4000 /files/ENCFF346VXQ/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF023HVW fastq reads ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF215BBJ 2607278617 Michael Snyder, Stanford 5d1deae2baa91609949f758d4941989a SRA:SRR6213090 https://www.encodeproject.org/files/ENCFF023HVW/@@download/ENCFF023HVW.fastq.gz Illumina HiSeq 4000 /files/ENCFF903FDT/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF100EDD bam unfiltered alignments ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF023HVW, ENCFF215BBJ, ENCFF643CGH 4526530268 ENCODE Processing Pipeline d66edf1e99c907d8d67dd24ded2973ea https://www.encodeproject.org/files/ENCFF100EDD/@@download/ENCFF100EDD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF132JEX bam alignments ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF023HVW, ENCFF215BBJ, ENCFF643CGH 3085690143 ENCODE Processing Pipeline 0000c75af88cb6d94d9807adea98a3bf https://www.encodeproject.org/files/ENCFF132JEX/@@download/ENCFF132JEX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF135QNN bam unfiltered alignments ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF023HVW, ENCFF215BBJ, ENCFF807MUK 4523689550 ENCODE Processing Pipeline 086d8434dfef219206011eeeea055838 https://www.encodeproject.org/files/ENCFF135QNN/@@download/ENCFF135QNN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF197PVC bam alignments ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF023HVW, ENCFF215BBJ, ENCFF807MUK 3081679719 ENCODE Processing Pipeline 5b199ca4e88a66a44b998a0d60bcb7da https://www.encodeproject.org/files/ENCFF197PVC/@@download/ENCFF197PVC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF259VHI bigWig fold change over control ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF197PVC, ENCFF662LAZ 1149331025 ENCODE Processing Pipeline bd0d0d07ba5be2971f4289f60b982a2b https://www.encodeproject.org/files/ENCFF259VHI/@@download/ENCFF259VHI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF450XID bed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF197PVC, ENCFF662LAZ 6170994 ENCODE Processing Pipeline b1a430c00c8370217dc3d85c7b14bc81 https://www.encodeproject.org/files/ENCFF450XID/@@download/ENCFF450XID.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF697PNO bigBed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF450XID 11646636 ENCODE Processing Pipeline d0937174cda5d9d579437aaa57f58678 https://www.encodeproject.org/files/ENCFF697PNO/@@download/ENCFF697PNO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF036SJZ bigWig signal p-value ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF197PVC, ENCFF662LAZ 1093905039 ENCODE Processing Pipeline 476dd6184fc9545b6d0ba79f50621622 https://www.encodeproject.org/files/ENCFF036SJZ/@@download/ENCFF036SJZ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF176MPT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF450XID 462391 ENCODE Processing Pipeline 198e03eb454b40ea6061ffd6a6ec7b7d https://www.encodeproject.org/files/ENCFF176MPT/@@download/ENCFF176MPT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF770KBA bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF176MPT 869257 ENCODE Processing Pipeline cab05949006e6184c1cf9aff6b04f9f5 https://www.encodeproject.org/files/ENCFF770KBA/@@download/ENCFF770KBA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767XQV bigWig signal p-value ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF132JEX 1058987828 ENCODE Processing Pipeline 552e7e7a45e1309ad50ec432a80ec86e https://www.encodeproject.org/files/ENCFF767XQV/@@download/ENCFF767XQV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF440TAC bigBed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF099LBC 11578295 ENCODE Processing Pipeline 0a94d07b18152e06ecde1022e3142bd8 https://www.encodeproject.org/files/ENCFF440TAC/@@download/ENCFF440TAC.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF099LBC bed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF132JEX 6103621 ENCODE Processing Pipeline ab7ff5f2d915ef680871b5183f1e1b1b https://www.encodeproject.org/files/ENCFF099LBC/@@download/ENCFF099LBC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF469VIV bigWig fold change over control ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF052DDM, ENCFF132JEX 1143002987 ENCODE Processing Pipeline f37e3bcf14698d14f6674356f917e529 https://www.encodeproject.org/files/ENCFF469VIV/@@download/ENCFF469VIV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF508LRF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF099LBC, ENCFF419RSJ 435831 ENCODE Processing Pipeline da4381c32108a407fb016978d3eb5db7 https://www.encodeproject.org/files/ENCFF508LRF/@@download/ENCFF508LRF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF865GFL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF508LRF 831064 ENCODE Processing Pipeline 675f986c92191cc8134bf30a18e52cab https://www.encodeproject.org/files/ENCFF865GFL/@@download/ENCFF865GFL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF001HMJ bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HNG 663747268 John Stamatoyannopoulos, UW f289db0686280b757d51d632ddb8af89 https://www.encodeproject.org/files/ENCFF001HMJ/@@download/ENCFF001HMJ.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HML bigBed broadPeak hotspots ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQR 5548203 John Stamatoyannopoulos, UW 466691244c87b6f1129523375b674a51 https://www.encodeproject.org/files/ENCFF001HML/@@download/ENCFF001HML.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMM bigBed broadPeak hotspots ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQS 2626989 John Stamatoyannopoulos, UW 06e57d22a57640947c33a2bd546ef23f https://www.encodeproject.org/files/ENCFF001HMM/@@download/ENCFF001HMM.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMN bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMV 223465407 John Stamatoyannopoulos, UW b16c2c15742e64913bfb17f334449473 https://www.encodeproject.org/files/ENCFF001HMN/@@download/ENCFF001HMN.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMO bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XQT 1867305 John Stamatoyannopoulos, UW a7650018b0b58ef518e1bae3bc031095 https://www.encodeproject.org/files/ENCFF001HMO/@@download/ENCFF001HMO.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMP bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XQU 872518 John Stamatoyannopoulos, UW aad02bf8d723a31db5e30f5b560ac2be https://www.encodeproject.org/files/ENCFF001HMP/@@download/ENCFF001HMP.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMQ bigWig raw signal ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMJ 92708140 John Stamatoyannopoulos, UW 46caf995f66dd4dd7a447985da236549 https://www.encodeproject.org/files/ENCFF001HMQ/@@download/ENCFF001HMQ.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMR bigWig raw signal ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMN 47775599 John Stamatoyannopoulos, UW 2b04405a6d7b57ec12d69a22e9ca71c9 https://www.encodeproject.org/files/ENCFF001HMR/@@download/ENCFF001HMR.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HMV fastq reads ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1386460716 John Stamatoyannopoulos, UW 0a751ce4a13b22cba136134f139cc593 https://www.encodeproject.org/files/ENCFF001HMV/@@download/ENCFF001HMV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HNC/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001HNG fastq reads ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 2370598870 John Stamatoyannopoulos, UW d6325cb16851c01a059d62901f2fc623 https://www.encodeproject.org/files/ENCFF001HNG/@@download/ENCFF001HNG.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HNC/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XQR bed broadPeak hotspots ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMJ 3268530 John Stamatoyannopoulos, UW 2c133edd6462114e1d2d81a6fdd37741 https://www.encodeproject.org/files/ENCFF001XQR/@@download/ENCFF001XQR.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XQS bed broadPeak hotspots ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMN 1734586 John Stamatoyannopoulos, UW 4351197c626bdfcdb250ddb961d613ff https://www.encodeproject.org/files/ENCFF001XQS/@@download/ENCFF001XQS.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XQT bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMJ 1160101 John Stamatoyannopoulos, UW 8e75d4cdb45b6964f189224cec21cb70 https://www.encodeproject.org/files/ENCFF001XQT/@@download/ENCFF001XQT.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF001XQU bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMN 589612 John Stamatoyannopoulos, UW 689e2aab8c5f9cd690e2e38010bedccf https://www.encodeproject.org/files/ENCFF001XQU/@@download/ENCFF001XQU.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF002DCV bed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HMJ, ENCFF001HMN 1062592 ENCODE Consortium Analysis Working Group 7a84af76cdca6859dbcbdea72982e5a2 https://www.encodeproject.org/files/ENCFF002DCV/@@download/ENCFF002DCV.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF957OOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCV 2191959 ENCODE Consortium 3b80d91a083bfb947dd20ff9dabc3fa8 https://www.encodeproject.org/files/ENCFF957OOQ/@@download/ENCFF957OOQ.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF195GIP bam unfiltered alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMV, ENCFF643CGH 1506462543 ENCODE Processing Pipeline 747ca8a1bae9696abd5792c00f476d90 https://www.encodeproject.org/files/ENCFF195GIP/@@download/ENCFF195GIP.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF018VMV bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMV, ENCFF643CGH 259571090 ENCODE Processing Pipeline 9409fbcb57689a967ffe3d460893a6a3 https://www.encodeproject.org/files/ENCFF018VMV/@@download/ENCFF018VMV.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF594YMC bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNG, ENCFF643CGH 495193914 ENCODE Processing Pipeline de37ec255c4b720bb15c74065dd4b4d4 https://www.encodeproject.org/files/ENCFF594YMC/@@download/ENCFF594YMC.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF609RNL bam unfiltered alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNG, ENCFF643CGH 2294594107 ENCODE Processing Pipeline 63a0ccb97a415071f4e0b75e6221e621 https://www.encodeproject.org/files/ENCFF609RNL/@@download/ENCFF609RNL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF412GTT bam unfiltered alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMV, ENCFF807MUK 1504201644 ENCODE Processing Pipeline 8797723ea4a4ee5b785431d3b7a532cb https://www.encodeproject.org/files/ENCFF412GTT/@@download/ENCFF412GTT.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF852CZT bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMV, ENCFF807MUK 259723141 ENCODE Processing Pipeline 3abc3941ebc137dadfb7857c52bcf9dc https://www.encodeproject.org/files/ENCFF852CZT/@@download/ENCFF852CZT.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF020GGX bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNG, ENCFF807MUK 495397873 ENCODE Processing Pipeline c9af6670aa760cb6118f8a4903c6ec31 https://www.encodeproject.org/files/ENCFF020GGX/@@download/ENCFF020GGX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF350FFC bam unfiltered alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNG, ENCFF807MUK 2291668827 ENCODE Processing Pipeline a4aa61a983a03ecd4e2a5fc8c869f6d9 https://www.encodeproject.org/files/ENCFF350FFC/@@download/ENCFF350FFC.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF449TWA bigWig signal p-value ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF594YMC, ENCFF846BEG 243961106 ENCODE Processing Pipeline cbe631befb27c5cd57038a14f48abcef https://www.encodeproject.org/files/ENCFF449TWA/@@download/ENCFF449TWA.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF372BGR bigWig signal p-value ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF018VMV, ENCFF594YMC, ENCFF846BEG 278314440 ENCODE Processing Pipeline 3d56dea3ea8ea8de35730ee30e5b73c4 https://www.encodeproject.org/files/ENCFF372BGR/@@download/ENCFF372BGR.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF183AAP bigWig signal p-value ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF018VMV, ENCFF846BEG 242279569 ENCODE Processing Pipeline 41f79c54826937c4d937c08fff4a3894 https://www.encodeproject.org/files/ENCFF183AAP/@@download/ENCFF183AAP.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF717PSX bigWig fold change over control ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF018VMV, ENCFF846BEG 86066751 ENCODE Processing Pipeline ef21b50b539f7824caa82f96b15bcbb2 https://www.encodeproject.org/files/ENCFF717PSX/@@download/ENCFF717PSX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF233WWI bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF594YMC, ENCFF846BEG 3462678 ENCODE Processing Pipeline 7859fe1e2b3757fd6204a9ec8b779211 https://www.encodeproject.org/files/ENCFF233WWI/@@download/ENCFF233WWI.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF026XKR bigWig fold change over control ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF594YMC, ENCFF846BEG 161200532 ENCODE Processing Pipeline 314a7f8367a26a96b2f5e6aa2e6cd886 https://www.encodeproject.org/files/ENCFF026XKR/@@download/ENCFF026XKR.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF320NTE bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF018VMV, ENCFF846BEG 1740254 ENCODE Processing Pipeline d7218455cd883cb72867d5879dd36d3e https://www.encodeproject.org/files/ENCFF320NTE/@@download/ENCFF320NTE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF338RAX bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF018VMV, ENCFF594YMC, ENCFF846BEG 4685995 ENCODE Processing Pipeline bc4754552a106067a30aad1e757be3eb https://www.encodeproject.org/files/ENCFF338RAX/@@download/ENCFF338RAX.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF611DFM bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF233WWI 8414093 ENCODE Processing Pipeline 6f7b6013767141abf10bcfc6f63b062b https://www.encodeproject.org/files/ENCFF611DFM/@@download/ENCFF611DFM.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF968ZTU bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF320NTE 3668775 ENCODE Processing Pipeline 883e619a2ae0832eb5d78ca41546d688 https://www.encodeproject.org/files/ENCFF968ZTU/@@download/ENCFF968ZTU.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF133AZT bigWig fold change over control ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF018VMV, ENCFF594YMC, ENCFF846BEG 224518792 ENCODE Processing Pipeline ff6849d561d996f317683ae3de9a1a09 https://www.encodeproject.org/files/ENCFF133AZT/@@download/ENCFF133AZT.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF033KSK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF314ZAL 1515754 ENCODE Processing Pipeline 1fbc81cb09ec23b6749d5fe1a7047b15 https://www.encodeproject.org/files/ENCFF033KSK/@@download/ENCFF033KSK.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF314ZAL bed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF233WWI, ENCFF320NTE, ENCFF338RAX, ENCFF419RSJ 861845 ENCODE Processing Pipeline 0937afc2b34f11b61c7e24442a9133e0 https://www.encodeproject.org/files/ENCFF314ZAL/@@download/ENCFF314ZAL.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF494XLY bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF338RAX 10790455 ENCODE Processing Pipeline efcf82d42644657e6a72cb19ec07504d https://www.encodeproject.org/files/ENCFF494XLY/@@download/ENCFF494XLY.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF530VSC bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF008LSM 1331836 ENCODE Processing Pipeline 7d4e620b8bded03e545072c6cf17d286 https://www.encodeproject.org/files/ENCFF530VSC/@@download/ENCFF530VSC.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF008LSM bed narrowPeak conservative idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF233WWI, ENCFF320NTE, ENCFF338RAX, ENCFF419RSJ 725062 ENCODE Processing Pipeline 5b198440342d7e0f598c7a2a66e5b992 https://www.encodeproject.org/files/ENCFF008LSM/@@download/ENCFF008LSM.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF242UQQ bigWig signal p-value ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF020GGX, ENCFF986XGP 298167522 ENCODE Processing Pipeline 6297371b78103403c790c7411226ebaa https://www.encodeproject.org/files/ENCFF242UQQ/@@download/ENCFF242UQQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF983UGK bigWig signal p-value ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF852CZT, ENCFF986XGP 227988635 ENCODE Processing Pipeline 31fd6e3383ac98feba3f69c7cd710f51 https://www.encodeproject.org/files/ENCFF983UGK/@@download/ENCFF983UGK.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF548NDF bigWig signal p-value ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF020GGX, ENCFF852CZT, ENCFF986XGP 277460930 ENCODE Processing Pipeline 63416608a14bcd6fba95e653e5330857 https://www.encodeproject.org/files/ENCFF548NDF/@@download/ENCFF548NDF.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF934XLT bigWig fold change over control ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF852CZT, ENCFF986XGP 86577506 ENCODE Processing Pipeline 03449899fcbf6f22106c81a6884da5d8 https://www.encodeproject.org/files/ENCFF934XLT/@@download/ENCFF934XLT.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF924LOC bigWig fold change over control ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF020GGX, ENCFF852CZT, ENCFF986XGP 222289577 ENCODE Processing Pipeline feecfe11a1ae635be53ab2fb1a3dda66 https://www.encodeproject.org/files/ENCFF924LOC/@@download/ENCFF924LOC.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF425BCQ bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF020GGX, ENCFF986XGP 3434760 ENCODE Processing Pipeline 10a066425c1f4c4901f1e63c66a31b81 https://www.encodeproject.org/files/ENCFF425BCQ/@@download/ENCFF425BCQ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF474FNG bigWig fold change over control ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF020GGX, ENCFF986XGP 159938879 ENCODE Processing Pipeline 7466def7da172f169b78d7dff478469b https://www.encodeproject.org/files/ENCFF474FNG/@@download/ENCFF474FNG.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF326OIK bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF020GGX, ENCFF852CZT, ENCFF986XGP 4682592 ENCODE Processing Pipeline 49c2c5cc939029cc39610441ca300fc4 https://www.encodeproject.org/files/ENCFF326OIK/@@download/ENCFF326OIK.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF195KSR bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035ZLA 3649616 ENCODE Processing Pipeline 111cc4edebce76db670a6ceab413d638 https://www.encodeproject.org/files/ENCFF195KSR/@@download/ENCFF195KSR.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF895AOX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF328FUO 1514550 ENCODE Processing Pipeline c4eeb15f25a1633e6af08abf900e56fc https://www.encodeproject.org/files/ENCFF895AOX/@@download/ENCFF895AOX.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF906FWI bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF326OIK 10790899 ENCODE Processing Pipeline dd276adaac9fafeb613b28c2bd2a0e6a https://www.encodeproject.org/files/ENCFF906FWI/@@download/ENCFF906FWI.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF062GOM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF154FAT 1331709 ENCODE Processing Pipeline 5a1890d2875bbb0ebb2da7dd37dafe13 https://www.encodeproject.org/files/ENCFF062GOM/@@download/ENCFF062GOM.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF154FAT bed narrowPeak conservative idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF035ZLA, ENCFF326OIK, ENCFF425BCQ 725649 ENCODE Processing Pipeline e953d069acf305d04d35ba5348c017a1 https://www.encodeproject.org/files/ENCFF154FAT/@@download/ENCFF154FAT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF035ZLA bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF852CZT, ENCFF986XGP 1729204 ENCODE Processing Pipeline 8dcb9fb047554a27bc9fe53c14fbd6d3 https://www.encodeproject.org/files/ENCFF035ZLA/@@download/ENCFF035ZLA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF603RLP bigBed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF425BCQ 8349098 ENCODE Processing Pipeline 200d82a9148f0fe7c13c0772eded8711 https://www.encodeproject.org/files/ENCFF603RLP/@@download/ENCFF603RLP.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF328FUO bed narrowPeak optimal idr thresholded peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF035ZLA, ENCFF326OIK, ENCFF425BCQ 861513 ENCODE Processing Pipeline 46f300b41d4198e9056638c44cfce2fe https://www.encodeproject.org/files/ENCFF328FUO/@@download/ENCFF328FUO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF536HLB fastq reads ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF669LRI 3465416305 Michael Snyder, Stanford 787a12a5303fa9745599bb4ea8f94ff2 SRA:SRR6213844 https://www.encodeproject.org/files/ENCFF536HLB/@@download/ENCFF536HLB.fastq.gz Illumina HiSeq 4000 /files/ENCFF229TOU/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF669LRI fastq reads ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF536HLB 3961779406 Michael Snyder, Stanford 32b89a7abc41cb5b35ecc0d7ab664bb5 SRA:SRR6213844 https://www.encodeproject.org/files/ENCFF669LRI/@@download/ENCFF669LRI.fastq.gz Illumina HiSeq 4000 /files/ENCFF546DKA/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF431RRC bam alignments ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF536HLB, ENCFF643CGH, ENCFF669LRI 5116491162 ENCODE Processing Pipeline 28a25074638ce2ff924011c91239acdd https://www.encodeproject.org/files/ENCFF431RRC/@@download/ENCFF431RRC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF828EMQ bam unfiltered alignments ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF536HLB, ENCFF643CGH, ENCFF669LRI 6630875579 ENCODE Processing Pipeline c99ccfab509311f0daaf6e0ae1cfd8d7 https://www.encodeproject.org/files/ENCFF828EMQ/@@download/ENCFF828EMQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF918RAY bam unfiltered alignments ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF536HLB, ENCFF669LRI, ENCFF807MUK 6625139675 ENCODE Processing Pipeline ad99bf9687395bc753f408992d8ac4fb https://www.encodeproject.org/files/ENCFF918RAY/@@download/ENCFF918RAY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF061QYS bam alignments ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF536HLB, ENCFF669LRI, ENCFF807MUK 5110448901 ENCODE Processing Pipeline dfffbf6550f5295ae8603b4c99f19a5a https://www.encodeproject.org/files/ENCFF061QYS/@@download/ENCFF061QYS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF004YQS bigWig signal p-value ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF061QYS, ENCFF667NBG 1554387278 ENCODE Processing Pipeline 0acbc8cd4543ba45fca808def5b50ca3 https://www.encodeproject.org/files/ENCFF004YQS/@@download/ENCFF004YQS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF474YXD bigBed narrowPeak peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF267ZRT 11452372 ENCODE Processing Pipeline bd3964eb48430376c2b0c1f6c8d11aa1 https://www.encodeproject.org/files/ENCFF474YXD/@@download/ENCFF474YXD.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF383DAZ bigWig signal p-value ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF431RRC, ENCFF797ERZ 1556993640 ENCODE Processing Pipeline 8e823707472cbb21b68f7786461e0abc https://www.encodeproject.org/files/ENCFF383DAZ/@@download/ENCFF383DAZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF739LQP bigWig fold change over control ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF061QYS, ENCFF667NBG 1642928597 ENCODE Processing Pipeline 5ea779e9b9cb8a9aefbef2eda328ef61 https://www.encodeproject.org/files/ENCFF739LQP/@@download/ENCFF739LQP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF267ZRT bed narrowPeak peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF061QYS, ENCFF667NBG 6347578 ENCODE Processing Pipeline 321abfd8144953b709e3a6bce9119524 https://www.encodeproject.org/files/ENCFF267ZRT/@@download/ENCFF267ZRT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF957ZLA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF267ZRT 124739 ENCODE Processing Pipeline ee575852307ca019247e9e97272eba60 https://www.encodeproject.org/files/ENCFF957ZLA/@@download/ENCFF957ZLA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF813BZS bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF957ZLA 289695 ENCODE Processing Pipeline 425a0574617dc80873b15d4f070cc982 https://www.encodeproject.org/files/ENCFF813BZS/@@download/ENCFF813BZS.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF684EDS bed narrowPeak peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF431RRC, ENCFF797ERZ 6354336 ENCODE Processing Pipeline 812f29c8b4b87536d352d442799f189c https://www.encodeproject.org/files/ENCFF684EDS/@@download/ENCFF684EDS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF390MQD bigWig fold change over control ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF431RRC, ENCFF797ERZ 1648964035 ENCODE Processing Pipeline 162d82f91534ba1aa7461a3ed3d3fb76 https://www.encodeproject.org/files/ENCFF390MQD/@@download/ENCFF390MQD.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF182GGQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF710ZQC 294155 ENCODE Processing Pipeline adca6a35ec39de108b79b28fccabfdeb https://www.encodeproject.org/files/ENCFF182GGQ/@@download/ENCFF182GGQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF557YQB bigBed narrowPeak peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF684EDS 11469451 ENCODE Processing Pipeline 8d4517882e243c3a22f1b64c621d0ece https://www.encodeproject.org/files/ENCFF557YQB/@@download/ENCFF557YQB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF710ZQC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF684EDS 127192 ENCODE Processing Pipeline b51d6e2af85e40d77c878bef1a3e1002 https://www.encodeproject.org/files/ENCFF710ZQC/@@download/ENCFF710ZQC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000ZCF bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 1 446668699 Michael Snyder, Stanford 222978ae5e4461ad9e9137a99637ba82 https://www.encodeproject.org/files/ENCFF000ZCF/@@download/ENCFF000ZCF.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZCG bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 1 383171903 Michael Snyder, Stanford 0053aad345ecf371d9e0206c061ceceb https://www.encodeproject.org/files/ENCFF000ZCG/@@download/ENCFF000ZCG.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000ZCH bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPF 1699552 Michael Snyder, Stanford a6014dc8560f52c717bf866c7730584d https://www.encodeproject.org/files/ENCFF000ZCH/@@download/ENCFF000ZCH.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCI fastq reads ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1012619162 Michael Snyder, Stanford d97cc2eaf488cfaf42390ae708a206dc https://www.encodeproject.org/files/ENCFF000ZCI/@@download/ENCFF000ZCI.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCK fastq reads ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 951416162 Michael Snyder, Stanford 7fe911a8065da93a0602e33f575563d3 https://www.encodeproject.org/files/ENCFF000ZCK/@@download/ENCFF000ZCK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCM bigWig signal ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 310848935 Michael Snyder, Stanford b7d17806fe61541160518845ad150b05 https://www.encodeproject.org/files/ENCFF000ZCM/@@download/ENCFF000ZCM.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VPF bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 635418 Michael Snyder, Stanford ca98f991de776737876fa7ed62528aaf https://www.encodeproject.org/files/ENCFF001VPF/@@download/ENCFF001VPF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CYN bed narrowPeak optimal idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 157971 ENCODE Consortium Analysis Working Group f0874364421681ba4667eee47c4a2ccf https://www.encodeproject.org/files/ENCFF002CYN/@@download/ENCFF002CYN.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF285XQT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYN 471880 ENCODE Consortium 16c96b23780eae53e5b5f3932947ceaf https://www.encodeproject.org/files/ENCFF285XQT/@@download/ENCFF285XQT.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF221HGL bam unfiltered alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCI, ENCFF643CGH 918812132 ENCODE Processing Pipeline 5628db08143ff1abea3e280a463e57a3 https://www.encodeproject.org/files/ENCFF221HGL/@@download/ENCFF221HGL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF559SVS bam unfiltered alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCK, ENCFF643CGH 872305027 ENCODE Processing Pipeline e0c97943b3544b3e4d40c7cdfbb58459 https://www.encodeproject.org/files/ENCFF559SVS/@@download/ENCFF559SVS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF591IRP bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCK, ENCFF643CGH 423654259 ENCODE Processing Pipeline 25c066e62c0d7251dfabb4b66b526c59 https://www.encodeproject.org/files/ENCFF591IRP/@@download/ENCFF591IRP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF708ISS bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCI, ENCFF643CGH 477652333 ENCODE Processing Pipeline 1c572e9b3d6d83b4d2074af60872f820 https://www.encodeproject.org/files/ENCFF708ISS/@@download/ENCFF708ISS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF990SPH bam unfiltered alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCK, ENCFF807MUK 867505189 ENCODE Processing Pipeline 56753ae2714d449908ddf56e0707d047 https://www.encodeproject.org/files/ENCFF990SPH/@@download/ENCFF990SPH.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF832GXU bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCI, ENCFF807MUK 478385274 ENCODE Processing Pipeline bb48266adc40f37c754a62d60428be1e https://www.encodeproject.org/files/ENCFF832GXU/@@download/ENCFF832GXU.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962ELB bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCK, ENCFF807MUK 424375381 ENCODE Processing Pipeline c7bc3f2efb23d867d46a8bb7ffac03a8 https://www.encodeproject.org/files/ENCFF962ELB/@@download/ENCFF962ELB.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962QDL bam unfiltered alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCI, ENCFF807MUK 917168864 ENCODE Processing Pipeline 204714df65ad3754c23562468e9c86c8 https://www.encodeproject.org/files/ENCFF962QDL/@@download/ENCFF962QDL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF472IKE bigWig signal p-value ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU 446730300 ENCODE Processing Pipeline 21275e4edf3ca9c0fc97975f2bb01638 https://www.encodeproject.org/files/ENCFF472IKE/@@download/ENCFF472IKE.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF004CFI bigWig signal p-value ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF156NSV, ENCFF708ISS, ENCFF715JBE 382032448 ENCODE Processing Pipeline adf874235c064ac28860ecba6d38df41 https://www.encodeproject.org/files/ENCFF004CFI/@@download/ENCFF004CFI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976ZTX bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU 5026248 ENCODE Processing Pipeline e1c449a8b60fd62bdb4142bad0d04618 https://www.encodeproject.org/files/ENCFF976ZTX/@@download/ENCFF976ZTX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF696JUU bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF962ELB 4050836 ENCODE Processing Pipeline 4a44bab8f4bcead504e3cb3893aca4f3 https://www.encodeproject.org/files/ENCFF696JUU/@@download/ENCFF696JUU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF377VMB bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU, ENCFF962ELB 5493241 ENCODE Processing Pipeline d1b004d8d683537268870dc48ec68744 https://www.encodeproject.org/files/ENCFF377VMB/@@download/ENCFF377VMB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF631JCA bigWig fold change over control ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU 300994981 ENCODE Processing Pipeline 13f77fff262d1962274be1b74b0e7ff1 https://www.encodeproject.org/files/ENCFF631JCA/@@download/ENCFF631JCA.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF426UWS bigWig fold change over control ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF156NSV, ENCFF708ISS, ENCFF715JBE 300367040 ENCODE Processing Pipeline 10c4552da96d75b12f55ea866e5a4609 https://www.encodeproject.org/files/ENCFF426UWS/@@download/ENCFF426UWS.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF937HVX bigWig fold change over control ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU, ENCFF962ELB 482267495 ENCODE Processing Pipeline 3bd878e1e93dc0fa8fca0acc19c32931 https://www.encodeproject.org/files/ENCFF937HVX/@@download/ENCFF937HVX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF809TRB bigWig signal p-value ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF962ELB 288629135 ENCODE Processing Pipeline 3151c4913bea4eb5d2e251ffcee5d807 https://www.encodeproject.org/files/ENCFF809TRB/@@download/ENCFF809TRB.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF867LOU bigWig fold change over control ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF156NSV, ENCFF591IRP 207817707 ENCODE Processing Pipeline 7e319f5cfa6aec6ce2276b131d6ac572 https://www.encodeproject.org/files/ENCFF867LOU/@@download/ENCFF867LOU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF651MDN bigWig signal p-value ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF156NSV, ENCFF591IRP 288673015 ENCODE Processing Pipeline 08b9db536d015dc350af5e39a151eef3 https://www.encodeproject.org/files/ENCFF651MDN/@@download/ENCFF651MDN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF951TLI bigWig signal p-value ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF156NSV, ENCFF591IRP, ENCFF708ISS, ENCFF715JBE 521775696 ENCODE Processing Pipeline a615177a444c7f7e5c0b35c345152bcd https://www.encodeproject.org/files/ENCFF951TLI/@@download/ENCFF951TLI.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF272CDV bigWig signal p-value ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU, ENCFF962ELB 522311852 ENCODE Processing Pipeline 7ea5e3ae279b6363faf180a029453fd8 https://www.encodeproject.org/files/ENCFF272CDV/@@download/ENCFF272CDV.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379LTX bigWig fold change over control ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF962ELB 208078567 ENCODE Processing Pipeline ee1de0e97bbe6d87a2ad0836a76d16cb https://www.encodeproject.org/files/ENCFF379LTX/@@download/ENCFF379LTX.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471QLZ bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF156NSV, ENCFF708ISS, ENCFF715JBE 4948789 ENCODE Processing Pipeline 54a782c6c8ce225c13aa0b4f49278b4d https://www.encodeproject.org/files/ENCFF471QLZ/@@download/ENCFF471QLZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF990MNV bigWig fold change over control ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF156NSV, ENCFF591IRP, ENCFF708ISS, ENCFF715JBE 480052566 ENCODE Processing Pipeline ec03f6b354ae676182c8027529cb3076 https://www.encodeproject.org/files/ENCFF990MNV/@@download/ENCFF990MNV.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF005KSQ bed narrowPeak conservative idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF377VMB, ENCFF696JUU, ENCFF976ZTX 150031 ENCODE Processing Pipeline 1a0975f69c531caeac5562a29f82a9ee https://www.encodeproject.org/files/ENCFF005KSQ/@@download/ENCFF005KSQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF281JBI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF938IOJ 421956 ENCODE Processing Pipeline a3f10fb3311827353b65ee88a10e8b5a https://www.encodeproject.org/files/ENCFF281JBI/@@download/ENCFF281JBI.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF791ZYV bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF156NSV, ENCFF591IRP, ENCFF708ISS, ENCFF715JBE 5392251 ENCODE Processing Pipeline 3ef8fededa063e3fda77731034960575 https://www.encodeproject.org/files/ENCFF791ZYV/@@download/ENCFF791ZYV.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF011MTR bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF995XED 7433772 ENCODE Processing Pipeline ea42782eb41ac8de15b2421e0cd7a6ff https://www.encodeproject.org/files/ENCFF011MTR/@@download/ENCFF011MTR.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF927OOF bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF377VMB 13274600 ENCODE Processing Pipeline fdd6bb408dbe10ca2940ad4264eb3a42 https://www.encodeproject.org/files/ENCFF927OOF/@@download/ENCFF927OOF.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF152VQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF005KSQ 369862 ENCODE Processing Pipeline 4d5e0b5c333b8702646e3b6755bb1475 https://www.encodeproject.org/files/ENCFF152VQZ/@@download/ENCFF152VQZ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427TST bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF976ZTX 10815375 ENCODE Processing Pipeline 512eff888144cf4472d9351fa0fbfc0f https://www.encodeproject.org/files/ENCFF427TST/@@download/ENCFF427TST.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF536RUH bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF696JUU 9959214 ENCODE Processing Pipeline 79ac50a86c1ab33b18b33bf08963583a https://www.encodeproject.org/files/ENCFF536RUH/@@download/ENCFF536RUH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF938IOJ bed narrowPeak optimal idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF377VMB, ENCFF696JUU, ENCFF976ZTX 180556 ENCODE Processing Pipeline c9635f75ccfec61b8087434efc5ee93c https://www.encodeproject.org/files/ENCFF938IOJ/@@download/ENCFF938IOJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF995XED bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF156NSV, ENCFF591IRP 3660094 ENCODE Processing Pipeline 03502f5fdca0a1f66013478a485bf89d https://www.encodeproject.org/files/ENCFF995XED/@@download/ENCFF995XED.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282JOV bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF791ZYV 13297474 ENCODE Processing Pipeline ce9276887e92959354d987e1f3a304a1 https://www.encodeproject.org/files/ENCFF282JOV/@@download/ENCFF282JOV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF804STW bigBed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF471QLZ 10786492 ENCODE Processing Pipeline 9a31dc56824f4d70e0595a2091638b7b https://www.encodeproject.org/files/ENCFF804STW/@@download/ENCFF804STW.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF729POI bed narrowPeak conservative idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF471QLZ, ENCFF791ZYV, ENCFF995XED 154270 ENCODE Processing Pipeline 1c5f218b91eea4d7a8544ef250a4f2db https://www.encodeproject.org/files/ENCFF729POI/@@download/ENCFF729POI.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF398UJQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF345RRM 416958 ENCODE Processing Pipeline 0b7175c934de8ac6788b98165ae2bd6b https://www.encodeproject.org/files/ENCFF398UJQ/@@download/ENCFF398UJQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF712ZHI bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF729POI 377555 ENCODE Processing Pipeline 10ef1af8ac54bfb27d66c01f8b09ae4e https://www.encodeproject.org/files/ENCFF712ZHI/@@download/ENCFF712ZHI.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF345RRM bed narrowPeak optimal idr thresholded peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF471QLZ, ENCFF791ZYV, ENCFF995XED 176110 ENCODE Processing Pipeline 9e66db53dcd2f86ed247589462858e71 https://www.encodeproject.org/files/ENCFF345RRM/@@download/ENCFF345RRM.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OFT bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OGC 1113241566 Richard Myers, HAIB 3abdba81426ae52373a6c75b95339d59 https://www.encodeproject.org/files/ENCFF000OFT/@@download/ENCFF000OFT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OFU bigBed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TZG 335763 Richard Myers, HAIB 7ee513aed7ebf3a90050f6ae71aad02e https://www.encodeproject.org/files/ENCFF000OFU/@@download/ENCFF000OFU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OFV bigBed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TZH 473452 Richard Myers, HAIB 953ae2c9c438f5d9030945de592d71e1 https://www.encodeproject.org/files/ENCFF000OFV/@@download/ENCFF000OFV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OFW bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OGH 1284608236 Richard Myers, HAIB 52cdb4c4f095cfeb6e9d63502c07b590 https://www.encodeproject.org/files/ENCFF000OFW/@@download/ENCFF000OFW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OFX bigWig raw signal ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 12071535 Richard Myers, HAIB b6c7aa2696639601db574251ef48dee4 https://www.encodeproject.org/files/ENCFF000OFX/@@download/ENCFF000OFX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000OFZ bigWig raw signal ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 23907801 Richard Myers, HAIB 3da2acceb89c76e619cd2207c1ab0abb https://www.encodeproject.org/files/ENCFF000OFZ/@@download/ENCFF000OFZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000OGC fastq reads ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 753030876 Richard Myers, HAIB 29a0cf661050a49283a6613cc2208469 https://www.encodeproject.org/files/ENCFF000OGC/@@download/ENCFF000OGC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OGH fastq reads ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1022932272 Richard Myers, HAIB 49c307b2f0e07072aee60541e02142f4 https://www.encodeproject.org/files/ENCFF000OGH/@@download/ENCFF000OGH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001TZG bed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 149523 Richard Myers, HAIB 8e5843c97332009af35bd817479019f6 https://www.encodeproject.org/files/ENCFF001TZG/@@download/ENCFF001TZG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001TZH bed broadPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 280865 Richard Myers, HAIB eeb7161043b1b3673aeda69cac596e5d https://www.encodeproject.org/files/ENCFF001TZH/@@download/ENCFF001TZH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CHY bed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 282154 ENCODE Consortium Analysis Working Group f6ea8668fc006929a00e08ac85165285 https://www.encodeproject.org/files/ENCFF002CHY/@@download/ENCFF002CHY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF280GJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHY 661822 ENCODE Consortium 1f9897e64080715fa6e3eecf6cf0fa1b https://www.encodeproject.org/files/ENCFF280GJO/@@download/ENCFF280GJO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF412ZRB bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF643CGH 970919450 ENCODE Processing Pipeline 8c490b2698707cb8fef89b72e2c6a87b https://www.encodeproject.org/files/ENCFF412ZRB/@@download/ENCFF412ZRB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF575GRT bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF643CGH 566838088 ENCODE Processing Pipeline 8265b1603a327623600cae1fdc4919df https://www.encodeproject.org/files/ENCFF575GRT/@@download/ENCFF575GRT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF985XWE bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF643CGH 1345408269 ENCODE Processing Pipeline f2c6e19143141b0c726a38d1dc07e0d9 https://www.encodeproject.org/files/ENCFF985XWE/@@download/ENCFF985XWE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF177XDM bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF643CGH 743430394 ENCODE Processing Pipeline 49149538d294da437dad4845ceb2fd06 https://www.encodeproject.org/files/ENCFF177XDM/@@download/ENCFF177XDM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF686PRS bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF807MUK 967819421 ENCODE Processing Pipeline a0c934b43c13f53a027a0a4cfa7b8159 https://www.encodeproject.org/files/ENCFF686PRS/@@download/ENCFF686PRS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF305OWM bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF807MUK 563659161 ENCODE Processing Pipeline 122c8c7bc37b5e9c41417be5f1c8ec3c https://www.encodeproject.org/files/ENCFF305OWM/@@download/ENCFF305OWM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF097OFH bam unfiltered alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF807MUK 1340962166 ENCODE Processing Pipeline 3358765c2885d5589e9ccd4586c34eb3 https://www.encodeproject.org/files/ENCFF097OFH/@@download/ENCFF097OFH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF388CVC bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF807MUK 738021623 ENCODE Processing Pipeline 2015c068fc357c88d41fc60b8f26ec7f https://www.encodeproject.org/files/ENCFF388CVC/@@download/ENCFF388CVC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF182KYZ bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF575GRT 255061285 ENCODE Processing Pipeline 07a84ee5b3faa66d74a9bce1530f7790 https://www.encodeproject.org/files/ENCFF182KYZ/@@download/ENCFF182KYZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF105MPH bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177XDM, ENCFF562HPN, ENCFF575GRT 537222156 ENCODE Processing Pipeline 75f57d84518677ed13764334c344cd95 https://www.encodeproject.org/files/ENCFF105MPH/@@download/ENCFF105MPH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF951TSS bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177XDM, ENCFF562HPN 4860295 ENCODE Processing Pipeline 0378174572aa280080c8fbebade0f3d0 https://www.encodeproject.org/files/ENCFF951TSS/@@download/ENCFF951TSS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF071CCU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF767OVB 495252 ENCODE Processing Pipeline 75d075baff1bfc5b03c58c4912a0af09 https://www.encodeproject.org/files/ENCFF071CCU/@@download/ENCFF071CCU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF041HHH bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177XDM, ENCFF562HPN, ENCFF575GRT 590037029 ENCODE Processing Pipeline c05b363b1f84473ce4072cfcb1913ba8 https://www.encodeproject.org/files/ENCFF041HHH/@@download/ENCFF041HHH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF182UOW bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF500MWL 11270426 ENCODE Processing Pipeline 0e9eb035156e160356cd6c8577c7d423 https://www.encodeproject.org/files/ENCFF182UOW/@@download/ENCFF182UOW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF767OVB bed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MWL, ENCFF552ARU, ENCFF951TSS 256334 ENCODE Processing Pipeline 4347abd67b74ad2f0ae63b23a3b75344 https://www.encodeproject.org/files/ENCFF767OVB/@@download/ENCFF767OVB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF540AAP bed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF500MWL, ENCFF552ARU, ENCFF951TSS 296703 ENCODE Processing Pipeline b57a74e5aefde946a17deafa312166e5 https://www.encodeproject.org/files/ENCFF540AAP/@@download/ENCFF540AAP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF599JVH bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF575GRT 440770358 ENCODE Processing Pipeline 998b94896f55e33cfb8a8e22d067e39b https://www.encodeproject.org/files/ENCFF599JVH/@@download/ENCFF599JVH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF431HWK bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177XDM, ENCFF562HPN 447435664 ENCODE Processing Pipeline c145c26e467e9f187c4de6f776492f02 https://www.encodeproject.org/files/ENCFF431HWK/@@download/ENCFF431HWK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF552ARU bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF562HPN, ENCFF575GRT 4276491 ENCODE Processing Pipeline 00596bd90d24e6ae7ae0415d9b9d1bda https://www.encodeproject.org/files/ENCFF552ARU/@@download/ENCFF552ARU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF500MWL bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF177XDM, ENCFF562HPN, ENCFF575GRT 5380462 ENCODE Processing Pipeline 3c6d3fdc0ab5c03f9476432431c00dee https://www.encodeproject.org/files/ENCFF500MWL/@@download/ENCFF500MWL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF703LXC bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF552ARU 10488664 ENCODE Processing Pipeline 7b5854eeee6123157f4ed83bb557f728 https://www.encodeproject.org/files/ENCFF703LXC/@@download/ENCFF703LXC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF670GXF bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF951TSS 10983165 ENCODE Processing Pipeline 9836668706e09116647c73b2073cb64a https://www.encodeproject.org/files/ENCFF670GXF/@@download/ENCFF670GXF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF845MJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF540AAP 672569 ENCODE Processing Pipeline 3133fda6609c451e52afe8ec5f1f6fc5 https://www.encodeproject.org/files/ENCFF845MJO/@@download/ENCFF845MJO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF790GTG bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177XDM, ENCFF562HPN 367154319 ENCODE Processing Pipeline 3f476c1b6e030fcab2b49958ab810bd3 https://www.encodeproject.org/files/ENCFF790GTG/@@download/ENCFF790GTG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF697UIX bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 252722852 ENCODE Processing Pipeline 118bd4836a3098abb303fb2e9f935103 https://www.encodeproject.org/files/ENCFF697UIX/@@download/ENCFF697UIX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF950ZUX bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 400632900 ENCODE Processing Pipeline 3967cca05193d03d5bf6064f6965bb1e https://www.encodeproject.org/files/ENCFF950ZUX/@@download/ENCFF950ZUX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF393YZE bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 520460804 ENCODE Processing Pipeline 9316d5c1614ce94d959aa279fe6c5c9b https://www.encodeproject.org/files/ENCFF393YZE/@@download/ENCFF393YZE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF660IAV bigWig signal p-value ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305OWM, ENCFF388CVC, ENCFF958RTR 586335003 ENCODE Processing Pipeline 2f78be6caf5011c466aff99e3a16e384 https://www.encodeproject.org/files/ENCFF660IAV/@@download/ENCFF660IAV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF229EJD bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 366552642 ENCODE Processing Pipeline 8ac7a402c2db0a4cb0b99ceb684d921c https://www.encodeproject.org/files/ENCFF229EJD/@@download/ENCFF229EJD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF411THR bigWig fold change over control ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305OWM, ENCFF388CVC, ENCFF958RTR 540924624 ENCODE Processing Pipeline bf2ae531b1d8e2bd061020d8011fe3dc https://www.encodeproject.org/files/ENCFF411THR/@@download/ENCFF411THR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF626GCR bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 4217685 ENCODE Processing Pipeline 713f7c15938a74780918c02c698d614e https://www.encodeproject.org/files/ENCFF626GCR/@@download/ENCFF626GCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF897WUX bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF626GCR 10422503 ENCODE Processing Pipeline 466a1feccfa25b70cefb0463ea626ecc https://www.encodeproject.org/files/ENCFF897WUX/@@download/ENCFF897WUX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF070XEI bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF466MWY 11252634 ENCODE Processing Pipeline f5ddeac77900443c6a5e95d397c5927e https://www.encodeproject.org/files/ENCFF070XEI/@@download/ENCFF070XEI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF270KWZ bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 4858938 ENCODE Processing Pipeline 921c7d3a7304282c1fbd1270122c75c3 https://www.encodeproject.org/files/ENCFF270KWZ/@@download/ENCFF270KWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF466MWY bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF305OWM, ENCFF388CVC, ENCFF958RTR 5338861 ENCODE Processing Pipeline 7e3b5d35b97608971c26401399c1cadb https://www.encodeproject.org/files/ENCFF466MWY/@@download/ENCFF466MWY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF544NRC bed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF270KWZ, ENCFF466MWY, ENCFF626GCR 288644 ENCODE Processing Pipeline c83c2b45f1ee4fc7ad3a0bce44c11279 https://www.encodeproject.org/files/ENCFF544NRC/@@download/ENCFF544NRC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF528MPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF544NRC 539605 ENCODE Processing Pipeline 16b2aa454feafb9fb601a05e08006ff1 https://www.encodeproject.org/files/ENCFF528MPL/@@download/ENCFF528MPL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF430QAC bigBed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF270KWZ 10948773 ENCODE Processing Pipeline 9db3c15ce8e19f2c4d28ecd638503ce6 https://www.encodeproject.org/files/ENCFF430QAC/@@download/ENCFF430QAC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF325FCK bed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF270KWZ, ENCFF466MWY, ENCFF626GCR 251008 ENCODE Processing Pipeline b888ed8b09e2012ec79b20eb1519b618 https://www.encodeproject.org/files/ENCFF325FCK/@@download/ENCFF325FCK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF476ZNS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF325FCK 488152 ENCODE Processing Pipeline 05e812a1cd804603c84aafa7bff69983 https://www.encodeproject.org/files/ENCFF476ZNS/@@download/ENCFF476ZNS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF357YNX fastq reads ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 2 ENCFF026VCA 3576179204 Michael Snyder, Stanford 7af43dfd9bc2e0c088f1e1d19c121d80 SRA:SRR6213095 https://www.encodeproject.org/files/ENCFF357YNX/@@download/ENCFF357YNX.fastq.gz Illumina HiSeq 4000 /files/ENCFF420UMA/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF026VCA fastq reads ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 1 100 paired-ended 1 ENCFF357YNX 3288041058 Michael Snyder, Stanford 7e6a5ebd1af013151ed1c0bef8fb9f46 SRA:SRR6213095 https://www.encodeproject.org/files/ENCFF026VCA/@@download/ENCFF026VCA.fastq.gz Illumina HiSeq 4000 /files/ENCFF640BFJ/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF796ULN bam unfiltered alignments ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 100 ENCFF026VCA, ENCFF357YNX, ENCFF807MUK 6433970853 ENCODE Processing Pipeline 7b1bb8dace6f32bb4d301cd959bcd9b8 https://www.encodeproject.org/files/ENCFF796ULN/@@download/ENCFF796ULN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF535PHN bam alignments ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 100 ENCFF026VCA, ENCFF357YNX, ENCFF807MUK 2950454173 ENCODE Processing Pipeline 0ffc3069df55bb72a4756bc686110be9 https://www.encodeproject.org/files/ENCFF535PHN/@@download/ENCFF535PHN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF384FGC bam unfiltered alignments ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 100 ENCFF026VCA, ENCFF357YNX, ENCFF643CGH 6435385087 ENCODE Processing Pipeline 7a221732968658acb60a204bdf8d3784 https://www.encodeproject.org/files/ENCFF384FGC/@@download/ENCFF384FGC.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF962NMX bam alignments ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 100 ENCFF026VCA, ENCFF357YNX, ENCFF643CGH 2954547016 ENCODE Processing Pipeline 25fd824575dc2410f76ad80a8e9c7a4e https://www.encodeproject.org/files/ENCFF962NMX/@@download/ENCFF962NMX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF122VYV bigWig fold change over control ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF535PHN, ENCFF759NQV 985587385 ENCODE Processing Pipeline 24079817473c48749a4a1c165dda1858 https://www.encodeproject.org/files/ENCFF122VYV/@@download/ENCFF122VYV.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF330JNL bigBed narrowPeak peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF236CLN 13424339 ENCODE Processing Pipeline e48e09340f2c18c96ddac4eb372f7cc1 https://www.encodeproject.org/files/ENCFF330JNL/@@download/ENCFF330JNL.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF174FQT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF001TDO, ENCFF236CLN 287585 ENCODE Processing Pipeline 038b72494ba90d894467e74488598070 https://www.encodeproject.org/files/ENCFF174FQT/@@download/ENCFF174FQT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF303LKW bigWig signal p-value ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF535PHN, ENCFF759NQV 945678220 ENCODE Processing Pipeline d327bcd24d884f871997f732a796717a https://www.encodeproject.org/files/ENCFF303LKW/@@download/ENCFF303LKW.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF236CLN bed narrowPeak peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF535PHN, ENCFF759NQV 6343065 ENCODE Processing Pipeline 724225d7918a98c0ca31cbf1a8de86c2 https://www.encodeproject.org/files/ENCFF236CLN/@@download/ENCFF236CLN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF925ADD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF174FQT 684533 ENCODE Processing Pipeline 2840d8b736c44030469bef05324cffbe https://www.encodeproject.org/files/ENCFF925ADD/@@download/ENCFF925ADD.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF375TVU bigWig signal p-value ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF401WSJ, ENCFF962NMX 999348600 ENCODE Processing Pipeline d26670ae8fa705008eaa10a64b77cee0 https://www.encodeproject.org/files/ENCFF375TVU/@@download/ENCFF375TVU.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF919SNV bigBed narrowPeak peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF349WRG 13432076 ENCODE Processing Pipeline 48a8fdacc3c2b1543fbbc665c1a77b8d https://www.encodeproject.org/files/ENCFF919SNV/@@download/ENCFF919SNV.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF003NPJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF128UUT 687493 ENCODE Processing Pipeline 6ff827c295e6b095bca07f56c77e70b7 https://www.encodeproject.org/files/ENCFF003NPJ/@@download/ENCFF003NPJ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF425FCE bigWig fold change over control ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF401WSJ, ENCFF962NMX 978321986 ENCODE Processing Pipeline 0cf5ebdb45e0b1dcdaf84db1f2561868 https://www.encodeproject.org/files/ENCFF425FCE/@@download/ENCFF425FCE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF349WRG bed narrowPeak peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF401WSJ, ENCFF962NMX 6337459 ENCODE Processing Pipeline 624f592880cd4019060a0481db6e1ab2 https://www.encodeproject.org/files/ENCFF349WRG/@@download/ENCFF349WRG.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF128UUT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF349WRG, ENCFF419RSJ 287496 ENCODE Processing Pipeline f3fc5377a4bdc04f306161793b96ad0f https://www.encodeproject.org/files/ENCFF128UUT/@@download/ENCFF128UUT.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000PYL bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 1 822323706 Richard Myers, HAIB 4b50d6ec5a461cb8e7a21df588cda8aa https://www.encodeproject.org/files/ENCFF000PYL/@@download/ENCFF000PYL.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYM bigBed broadPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJP 462103 Richard Myers, HAIB 5a4267440ca02043d34a40286865b120 https://www.encodeproject.org/files/ENCFF000PYM/@@download/ENCFF000PYM.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYN bigBed broadPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJQ 1249083 Richard Myers, HAIB 8b8f1a6772c3d173a2fedb1880455456 https://www.encodeproject.org/files/ENCFF000PYN/@@download/ENCFF000PYN.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYO bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 1 881691239 Richard Myers, HAIB e6dff4b3304ed6e58c2a15e0aea2d4e2 https://www.encodeproject.org/files/ENCFF000PYO/@@download/ENCFF000PYO.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYQ bigWig raw signal ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 1 17804709 Richard Myers, HAIB 8bdb31d94926a6f92f11ee0a459e6bf1 https://www.encodeproject.org/files/ENCFF000PYQ/@@download/ENCFF000PYQ.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYS bigWig raw signal ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 1 43870480 Richard Myers, HAIB ad0902f42a036598d84b378d07e3d6a3 https://www.encodeproject.org/files/ENCFF000PYS/@@download/ENCFF000PYS.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYX fastq reads ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 963094529 Richard Myers, HAIB 30fd1904dccb981641efafdd34c7c8c1 https://www.encodeproject.org/files/ENCFF000PYX/@@download/ENCFF000PYX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEU/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF000PYZ fastq reads ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1127180190 Richard Myers, HAIB 6e7dde2257d59de2d86a46ccf1ba5e6a https://www.encodeproject.org/files/ENCFF000PYZ/@@download/ENCFF000PYZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UJP bed broadPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 1 230221 Richard Myers, HAIB 364cfc5d54f7780bb402a120882dfed5 https://www.encodeproject.org/files/ENCFF001UJP/@@download/ENCFF001UJP.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UJQ bed broadPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 1 658908 Richard Myers, HAIB 1486ee285d629ced2ce23190677784ae https://www.encodeproject.org/files/ENCFF001UJQ/@@download/ENCFF001UJQ.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CLU bed narrowPeak optimal idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 495891 ENCODE Consortium Analysis Working Group b27d8f475ea230f1eb132ba49fd7bffe https://www.encodeproject.org/files/ENCFF002CLU/@@download/ENCFF002CLU.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF721DHW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLU 1287334 ENCODE Consortium 0f40eac98a204da32f831708f8d39b2b https://www.encodeproject.org/files/ENCFF721DHW/@@download/ENCFF721DHW.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF386ZEB bam unfiltered alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYZ, ENCFF807MUK 1278816511 ENCODE Processing Pipeline dedd5ec00d1aa1ec961df649552f8dca https://www.encodeproject.org/files/ENCFF386ZEB/@@download/ENCFF386ZEB.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF032EXY bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYZ, ENCFF807MUK 310972759 ENCODE Processing Pipeline dbd8b6366013c6ed876c980d5246956f https://www.encodeproject.org/files/ENCFF032EXY/@@download/ENCFF032EXY.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF393OPU bam unfiltered alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYX, ENCFF807MUK 1134642468 ENCODE Processing Pipeline a917587d0c7d7e8d26c9312770f4a1f2 https://www.encodeproject.org/files/ENCFF393OPU/@@download/ENCFF393OPU.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF620AHU bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYX, ENCFF807MUK 457949625 ENCODE Processing Pipeline 02a2e2bb109ae341f790834e2edafe23 https://www.encodeproject.org/files/ENCFF620AHU/@@download/ENCFF620AHU.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF551QGI bam unfiltered alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYZ, ENCFF643CGH 1282956672 ENCODE Processing Pipeline 2c797dcb531cfdeb7d141b32efdec19e https://www.encodeproject.org/files/ENCFF551QGI/@@download/ENCFF551QGI.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF665PGG bam unfiltered alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYX, ENCFF643CGH 1136235528 ENCODE Processing Pipeline 05eb120fad757f96bfaaef56a7a251b0 https://www.encodeproject.org/files/ENCFF665PGG/@@download/ENCFF665PGG.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF823GCX bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYZ, ENCFF643CGH 310697982 ENCODE Processing Pipeline 4f92bcecf3b99eb51ab9adf3ce3e3c1a https://www.encodeproject.org/files/ENCFF823GCX/@@download/ENCFF823GCX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF827SLL bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYX, ENCFF643CGH 457476245 ENCODE Processing Pipeline 2e9b3adafcbbb1f6494e6a76dfd99dfc https://www.encodeproject.org/files/ENCFF827SLL/@@download/ENCFF827SLL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF631VAT bigWig fold change over control ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF234NVU, ENCFF823GCX, ENCFF827SLL, ENCFF913HVS 367095664 ENCODE Processing Pipeline dedf2788ca990f96b98127eca54f3043 https://www.encodeproject.org/files/ENCFF631VAT/@@download/ENCFF631VAT.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF600KSR bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234NVU, ENCFF827SLL 4618643 ENCODE Processing Pipeline f80fb0a330e853076d1ecde97c30d612 https://www.encodeproject.org/files/ENCFF600KSR/@@download/ENCFF600KSR.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF367DJC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF160TXQ 633959 ENCODE Processing Pipeline af6b78542dc44983e74f960ff2ff6964 https://www.encodeproject.org/files/ENCFF367DJC/@@download/ENCFF367DJC.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF178MCM bigWig fold change over control ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF823GCX, ENCFF913HVS 144286414 ENCODE Processing Pipeline 2cdd8aeda2dda8e589b246c831cbed6d https://www.encodeproject.org/files/ENCFF178MCM/@@download/ENCFF178MCM.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF387JQM bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF823GCX, ENCFF913HVS 2327422 ENCODE Processing Pipeline 919ab98f1062428b5bacc0e4b1fa2c45 https://www.encodeproject.org/files/ENCFF387JQM/@@download/ENCFF387JQM.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF111LUX bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF234NVU, ENCFF823GCX, ENCFF827SLL, ENCFF913HVS 5407264 ENCODE Processing Pipeline 8151ed30cf0e34d025af1edbe8c3f1f9 https://www.encodeproject.org/files/ENCFF111LUX/@@download/ENCFF111LUX.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF390HFN bigBed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF387JQM 4748073 ENCODE Processing Pipeline 80f0a29119bd413114ea5d7bdc20f717 https://www.encodeproject.org/files/ENCFF390HFN/@@download/ENCFF390HFN.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF801QVO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF533GSH 1115030 ENCODE Processing Pipeline e0cc80ceedc2a75ac71a6d6bfdd2b578 https://www.encodeproject.org/files/ENCFF801QVO/@@download/ENCFF801QVO.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF801JVB bigWig signal p-value ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF823GCX, ENCFF913HVS 306250193 ENCODE Processing Pipeline c287fa83d37a5d47a8746e44ea86b6aa https://www.encodeproject.org/files/ENCFF801JVB/@@download/ENCFF801JVB.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF028RYK bigWig signal p-value ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234NVU, ENCFF827SLL 308236039 ENCODE Processing Pipeline 9b9fe2654a338ee643cd506f7c496dbc https://www.encodeproject.org/files/ENCFF028RYK/@@download/ENCFF028RYK.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF933BWN bigWig signal p-value ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF234NVU, ENCFF823GCX, ENCFF827SLL, ENCFF913HVS 578060235 ENCODE Processing Pipeline 1848013f123443a0ce5ad6962200eff1 https://www.encodeproject.org/files/ENCFF933BWN/@@download/ENCFF933BWN.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF779QGH bigWig fold change over control ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF234NVU, ENCFF827SLL 182569393 ENCODE Processing Pipeline ed9a7217c94fc78f0c5f1bcb7d83a083 https://www.encodeproject.org/files/ENCFF779QGH/@@download/ENCFF779QGH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF097LYC bigBed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF600KSR 10188455 ENCODE Processing Pipeline 8a76730e139f9a7fc13b2609c0c1fb97 https://www.encodeproject.org/files/ENCFF097LYC/@@download/ENCFF097LYC.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF653OIU bigBed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF111LUX 13201275 ENCODE Processing Pipeline 100b546549290ea7fbc9cca374cef2b5 https://www.encodeproject.org/files/ENCFF653OIU/@@download/ENCFF653OIU.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF160TXQ bed narrowPeak conservative idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF111LUX, ENCFF387JQM, ENCFF419RSJ, ENCFF600KSR 336013 ENCODE Processing Pipeline 4b878558672672e2613aaced03c649fe https://www.encodeproject.org/files/ENCFF160TXQ/@@download/ENCFF160TXQ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF533GSH bed narrowPeak optimal idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF111LUX, ENCFF387JQM, ENCFF419RSJ, ENCFF600KSR 533841 ENCODE Processing Pipeline 7d606acf8a9036afa2f4744e0e01b98b https://www.encodeproject.org/files/ENCFF533GSH/@@download/ENCFF533GSH.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF581MUK bigWig signal p-value ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032EXY, ENCFF701KUD 370403480 ENCODE Processing Pipeline c0c62d338a37e2b2e5fb08ca3b8a9590 https://www.encodeproject.org/files/ENCFF581MUK/@@download/ENCFF581MUK.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF401YGB bigWig signal p-value ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF620AHU 357297017 ENCODE Processing Pipeline 8c1ae02733dc53a8c2e3e3db6227c472 https://www.encodeproject.org/files/ENCFF401YGB/@@download/ENCFF401YGB.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF321IMA bigWig fold change over control ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032EXY, ENCFF701KUD 143035737 ENCODE Processing Pipeline 7823a63db9f589371884b87b799a23f3 https://www.encodeproject.org/files/ENCFF321IMA/@@download/ENCFF321IMA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF072IAO bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF620AHU 4618271 ENCODE Processing Pipeline ae10aa547fd6fab5d59fa959444e259c https://www.encodeproject.org/files/ENCFF072IAO/@@download/ENCFF072IAO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF395KZG bigBed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF373HDQ 13198950 ENCODE Processing Pipeline ce6b88b82ebb91a420b5d28cea0f3c31 https://www.encodeproject.org/files/ENCFF395KZG/@@download/ENCFF395KZG.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF142VQA bed narrowPeak conservative idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF072IAO, ENCFF318UXE, ENCFF373HDQ 333853 ENCODE Processing Pipeline 81c080e63ed8d6937712958f93ca5587 https://www.encodeproject.org/files/ENCFF142VQA/@@download/ENCFF142VQA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF116HDD bigWig fold change over control ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF620AHU 182892065 ENCODE Processing Pipeline 776c3779144df0e767117bdd9f39d20a https://www.encodeproject.org/files/ENCFF116HDD/@@download/ENCFF116HDD.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF123OID bigWig fold change over control ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032EXY, ENCFF585PFH, ENCFF620AHU, ENCFF701KUD 372560758 ENCODE Processing Pipeline 663d377babba2169e0c4593289866751 https://www.encodeproject.org/files/ENCFF123OID/@@download/ENCFF123OID.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF015ZGW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF917COW 1117257 ENCODE Processing Pipeline c847481cc26037ca9d6dc80d2426e644 https://www.encodeproject.org/files/ENCFF015ZGW/@@download/ENCFF015ZGW.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF241OVB bigWig signal p-value ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032EXY, ENCFF585PFH, ENCFF620AHU, ENCFF701KUD 646197561 ENCODE Processing Pipeline abff8dc20789f49d4b1baebaaf4d9cc2 https://www.encodeproject.org/files/ENCFF241OVB/@@download/ENCFF241OVB.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF373HDQ bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032EXY, ENCFF585PFH, ENCFF620AHU, ENCFF701KUD 5408876 ENCODE Processing Pipeline 6c50803f86b68e6bc9eb027fe87e58d8 https://www.encodeproject.org/files/ENCFF373HDQ/@@download/ENCFF373HDQ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF388AYF bigBed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF318UXE 5824007 ENCODE Processing Pipeline 2a57e537834e0809d1b6ef7397dade25 https://www.encodeproject.org/files/ENCFF388AYF/@@download/ENCFF388AYF.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF002SKH bigBed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF072IAO 10183558 ENCODE Processing Pipeline 942c0728ffc98048937343f5ca440b36 https://www.encodeproject.org/files/ENCFF002SKH/@@download/ENCFF002SKH.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF917COW bed narrowPeak optimal idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF072IAO, ENCFF318UXE, ENCFF373HDQ 534776 ENCODE Processing Pipeline 50091b97c0b4ff0828db52d7241d577e https://www.encodeproject.org/files/ENCFF917COW/@@download/ENCFF917COW.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF318UXE bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032EXY, ENCFF701KUD 2363535 ENCODE Processing Pipeline adc1ffb997c20bbb67d594a28cededba https://www.encodeproject.org/files/ENCFF318UXE/@@download/ENCFF318UXE.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF574SLM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF142VQA 630249 ENCODE Processing Pipeline b06556a3313f1d13de0c48521ad336c4 https://www.encodeproject.org/files/ENCFF574SLM/@@download/ENCFF574SLM.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF311BDI fastq reads ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 2 36 single-ended 1797377319 Bradley Bernstein, Broad 3cb69960f7e7ee157ea9d6a6ce5b3d1c https://www.encodeproject.org/files/ENCFF311BDI/@@download/ENCFF311BDI.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length experiment not submitted to GEO ENCFF879QBW fastq reads ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 1 36 single-ended 940637178 Bradley Bernstein, Broad 57daa9d453a788da90cff7168bc0b3bc https://www.encodeproject.org/files/ENCFF879QBW/@@download/ENCFF879QBW.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length experiment not submitted to GEO ENCFF238ZJH bam unfiltered alignments ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 36 ENCFF311BDI, ENCFF643CGH, ENCFF879QBW 3457820108 ENCODE Processing Pipeline 88232e8d0f2f2f3a7a83a063853b6226 https://www.encodeproject.org/files/ENCFF238ZJH/@@download/ENCFF238ZJH.bam GRCh38 released low read length experiment not submitted to GEO ENCFF348GBG bam unfiltered alignments ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 36 ENCFF311BDI, ENCFF807MUK, ENCFF879QBW 3443885492 ENCODE Processing Pipeline aac1aba5a611f636f869b00dce248ba9 https://www.encodeproject.org/files/ENCFF348GBG/@@download/ENCFF348GBG.bam hg19 released low read length experiment not submitted to GEO ENCFF423BGB bam alignments ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 36 ENCFF311BDI, ENCFF643CGH, ENCFF879QBW 2289051069 ENCODE Processing Pipeline 4a91dca3d708a4897d74f370f0bd5fcb https://www.encodeproject.org/files/ENCFF423BGB/@@download/ENCFF423BGB.bam GRCh38 released low read length experiment not submitted to GEO ENCFF897ATK bam alignments ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 36 ENCFF311BDI, ENCFF807MUK, ENCFF879QBW 2289713650 ENCODE Processing Pipeline 9d24204d7bc2d06be76a25f17eaabe0a https://www.encodeproject.org/files/ENCFF897ATK/@@download/ENCFF897ATK.bam hg19 released low read length experiment not submitted to GEO ENCFF415AEN bigWig signal p-value ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF243MTV, ENCFF897ATK 1749860784 ENCODE Processing Pipeline 2db40692980f22844a26746ee069fafc https://www.encodeproject.org/files/ENCFF415AEN/@@download/ENCFF415AEN.bigWig hg19 released low read length experiment not submitted to GEO ENCFF185WYT bigWig fold change over control ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF243MTV, ENCFF897ATK 1948637827 ENCODE Processing Pipeline 67ba50d756692a4e1039b765a8283813 https://www.encodeproject.org/files/ENCFF185WYT/@@download/ENCFF185WYT.bigWig hg19 released low read length experiment not submitted to GEO ENCFF192TWT bed narrowPeak peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF243MTV, ENCFF897ATK 7136661 ENCODE Processing Pipeline 3640e010c6f5232ebada781ac27e6bfb https://www.encodeproject.org/files/ENCFF192TWT/@@download/ENCFF192TWT.bed.gz hg19 released low read length experiment not submitted to GEO ENCFF557ZPA bigBed narrowPeak peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF192TWT 12611429 ENCODE Processing Pipeline a386552a5490f1b0bf1eac4c8181506f https://www.encodeproject.org/files/ENCFF557ZPA/@@download/ENCFF557ZPA.bigBed hg19 released low read length experiment not submitted to GEO ENCFF254HZM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF001TDO, ENCFF192TWT 661660 ENCODE Processing Pipeline 7565b5449a9db43114c5e6f158d239fc https://www.encodeproject.org/files/ENCFF254HZM/@@download/ENCFF254HZM.bed.gz hg19 released low read length experiment not submitted to GEO ENCFF659DIN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF254HZM 1422766 ENCODE Processing Pipeline d757c951ad6dd1bc832ec0a031a6eea3 https://www.encodeproject.org/files/ENCFF659DIN/@@download/ENCFF659DIN.bigBed hg19 released low read length experiment not submitted to GEO ENCFF777DCR bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF058QPX, ENCFF419RSJ 661356 ENCODE Processing Pipeline 8bd3ab51fd4c04f93fa43bb2cc61d437 https://www.encodeproject.org/files/ENCFF777DCR/@@download/ENCFF777DCR.bed.gz GRCh38 released low read length experiment not submitted to GEO ENCFF623SBU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF777DCR 1419865 ENCODE Processing Pipeline 6382235593ccb6b0947c09b3685523a6 https://www.encodeproject.org/files/ENCFF623SBU/@@download/ENCFF623SBU.bigBed GRCh38 released low read length experiment not submitted to GEO ENCFF210YFI bigWig signal p-value ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF423BGB, ENCFF504ZFN 1898256299 ENCODE Processing Pipeline 34b908939a9e9c1dff0da783da479e90 https://www.encodeproject.org/files/ENCFF210YFI/@@download/ENCFF210YFI.bigWig GRCh38 released low read length experiment not submitted to GEO ENCFF806OYX bigWig fold change over control ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF423BGB, ENCFF504ZFN 1947397585 ENCODE Processing Pipeline 6139f93c43bcc18d453b846b35616bf3 https://www.encodeproject.org/files/ENCFF806OYX/@@download/ENCFF806OYX.bigWig GRCh38 released low read length experiment not submitted to GEO ENCFF058QPX bed narrowPeak peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF423BGB, ENCFF504ZFN 7039833 ENCODE Processing Pipeline ad985aba6bc6d6db94e713abb7bcfa47 https://www.encodeproject.org/files/ENCFF058QPX/@@download/ENCFF058QPX.bed.gz GRCh38 released low read length experiment not submitted to GEO ENCFF686OXR bigBed narrowPeak peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF058QPX 12490173 ENCODE Processing Pipeline 03a2954320eb8cfa4fa7bb2ebb807597 https://www.encodeproject.org/files/ENCFF686OXR/@@download/ENCFF686OXR.bigBed GRCh38 released low read length experiment not submitted to GEO ENCFF000RFA bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RFI 545208503 Richard Myers, HAIB 6a307ab92b4290c2a50292ca9e16fa93 https://www.encodeproject.org/files/ENCFF000RFA/@@download/ENCFF000RFA.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RFB bigBed broadPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UQR 1076001 Richard Myers, HAIB 0a69af9fcb026908f1363d8ad8847bd5 https://www.encodeproject.org/files/ENCFF000RFB/@@download/ENCFF000RFB.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RFC bigBed broadPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UQS 932575 Richard Myers, HAIB f5dbd7ad8c8a78255a695f70a95c15a2 https://www.encodeproject.org/files/ENCFF000RFC/@@download/ENCFF000RFC.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RFD bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RFO 570413779 Richard Myers, HAIB c971011011d8ddb981121f0afe1658b1 https://www.encodeproject.org/files/ENCFF000RFD/@@download/ENCFF000RFD.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RFE bigWig raw signal ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 21336204 Richard Myers, HAIB 4fd21d825507e89425cd28608414df8f https://www.encodeproject.org/files/ENCFF000RFE/@@download/ENCFF000RFE.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000RFH bigWig raw signal ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 31401197 Richard Myers, HAIB 0fdf1d46cebe1b2d014f0081b62d4968 https://www.encodeproject.org/files/ENCFF000RFH/@@download/ENCFF000RFH.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RFI fastq reads ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 477150598 Richard Myers, HAIB a51b2dd55eb26f25764e03ede9670854 https://www.encodeproject.org/files/ENCFF000RFI/@@download/ENCFF000RFI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RFO fastq reads ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 591294560 Richard Myers, HAIB bdb4efdd36c2c5abd667bdd19e89d10e https://www.encodeproject.org/files/ENCFF000RFO/@@download/ENCFF000RFO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RGI/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UQR bed broadPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 594256 Richard Myers, HAIB 2e4986341eaeab2d9237ca1eea289761 https://www.encodeproject.org/files/ENCFF001UQR/@@download/ENCFF001UQR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF001UQS bed broadPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 654885 Richard Myers, HAIB b2b40d0ee5940e010cf4292faba4aea8 https://www.encodeproject.org/files/ENCFF001UQS/@@download/ENCFF001UQS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF002CNO bed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 780608 ENCODE Consortium Analysis Working Group cf7d9a863c4693af019267a204431d14 https://www.encodeproject.org/files/ENCFF002CNO/@@download/ENCFF002CNO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF556IRN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNO 1461502 ENCODE Consortium 4ac91971d517d97296bd0b282f88644e https://www.encodeproject.org/files/ENCFF556IRN/@@download/ENCFF556IRN.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF453HFQ bam unfiltered alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RFI, ENCFF643CGH 633886580 ENCODE Processing Pipeline 9a015698b76497b8215a270ec9c6914b https://www.encodeproject.org/files/ENCFF453HFQ/@@download/ENCFF453HFQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF189GFZ bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RFI, ENCFF643CGH 379400371 ENCODE Processing Pipeline 2787f6be85345c16c2d45c639ccdf836 https://www.encodeproject.org/files/ENCFF189GFZ/@@download/ENCFF189GFZ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF631KKX bam unfiltered alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RFO, ENCFF643CGH 686711631 ENCODE Processing Pipeline d089e2896bf89056388d949d706eb1df https://www.encodeproject.org/files/ENCFF631KKX/@@download/ENCFF631KKX.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF132NVE bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RFO, ENCFF643CGH 253457563 ENCODE Processing Pipeline 9de1e0419acb4bffd5d8848eb7b9fcb6 https://www.encodeproject.org/files/ENCFF132NVE/@@download/ENCFF132NVE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF287RVF bam unfiltered alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RFO, ENCFF807MUK 685128741 ENCODE Processing Pipeline 8a66d01cdec31bbb249a34bbb2c2c575 https://www.encodeproject.org/files/ENCFF287RVF/@@download/ENCFF287RVF.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF373FVR bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RFO, ENCFF807MUK 253691770 ENCODE Processing Pipeline bfc55e59ce08850ccab0cbce95671c0a https://www.encodeproject.org/files/ENCFF373FVR/@@download/ENCFF373FVR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF725NGA bam unfiltered alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RFI, ENCFF807MUK 631486544 ENCODE Processing Pipeline 7cf2d8792532fc4b1874783aa995722a https://www.encodeproject.org/files/ENCFF725NGA/@@download/ENCFF725NGA.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF587REM bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RFI, ENCFF807MUK 379617138 ENCODE Processing Pipeline 1e14f4b7569d5f7ff9e8e32a089a588d https://www.encodeproject.org/files/ENCFF587REM/@@download/ENCFF587REM.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF707IED bigWig signal p-value ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189GFZ 343520499 ENCODE Processing Pipeline 24113f2d2bc72470cb1e6f3218ac37ff https://www.encodeproject.org/files/ENCFF707IED/@@download/ENCFF707IED.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF529CFV bigWig signal p-value ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF132NVE 338558580 ENCODE Processing Pipeline ddc60598976fb15382b75462cd166d56 https://www.encodeproject.org/files/ENCFF529CFV/@@download/ENCFF529CFV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF802JZV bigWig signal p-value ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132NVE, ENCFF189GFZ 413787870 ENCODE Processing Pipeline 6995615bf29f60aeb4c4b0ec6ba6f2a5 https://www.encodeproject.org/files/ENCFF802JZV/@@download/ENCFF802JZV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF017AIT bigWig fold change over control ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189GFZ 204965919 ENCODE Processing Pipeline 4eaacb2bdc058be8b6c90a8d01ce8977 https://www.encodeproject.org/files/ENCFF017AIT/@@download/ENCFF017AIT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF222GQG bigWig fold change over control ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132NVE, ENCFF189GFZ 300030633 ENCODE Processing Pipeline e1dca6a5fff210a5e44717cf72c24f0e https://www.encodeproject.org/files/ENCFF222GQG/@@download/ENCFF222GQG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF376YAU bigWig fold change over control ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF132NVE 125718259 ENCODE Processing Pipeline 49fbe04dcd7be0c69d30383dce5f2cd8 https://www.encodeproject.org/files/ENCFF376YAU/@@download/ENCFF376YAU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF717PSS bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189GFZ 3429798 ENCODE Processing Pipeline 506c2818742779c12557a82fec797633 https://www.encodeproject.org/files/ENCFF717PSS/@@download/ENCFF717PSS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF947HQT bigBed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF854RBH 8480677 ENCODE Processing Pipeline 38100224f9ef1506b87d234ca44cab1d https://www.encodeproject.org/files/ENCFF947HQT/@@download/ENCFF947HQT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF640BUJ bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF132NVE 2053513 ENCODE Processing Pipeline a71f669955b2ab923fa4115d5bb02ccc https://www.encodeproject.org/files/ENCFF640BUJ/@@download/ENCFF640BUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF845TRF bigBed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF717PSS 7189371 ENCODE Processing Pipeline 6c9101eba9b8cdeb247350fc9aad94dc https://www.encodeproject.org/files/ENCFF845TRF/@@download/ENCFF845TRF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF693JLS bigBed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF640BUJ 4436832 ENCODE Processing Pipeline 7117aed7c7f11ce2505e987a35aeab65 https://www.encodeproject.org/files/ENCFF693JLS/@@download/ENCFF693JLS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF854RBH bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132NVE, ENCFF189GFZ 4089402 ENCODE Processing Pipeline b90ebf51052e346bcbd0e70efd073826 https://www.encodeproject.org/files/ENCFF854RBH/@@download/ENCFF854RBH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF049EUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF049UCF 1005998 ENCODE Processing Pipeline 1e138cecf1fd445752c61ca10bcdc46a https://www.encodeproject.org/files/ENCFF049EUJ/@@download/ENCFF049EUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF049UCF bed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF640BUJ, ENCFF717PSS, ENCFF854RBH 662927 ENCODE Processing Pipeline dae984ed1ebfb1518c2a6a2eeab81fbf https://www.encodeproject.org/files/ENCFF049UCF/@@download/ENCFF049UCF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF345BML bigWig fold change over control ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF587REM 205234979 ENCODE Processing Pipeline 55579be73c8fc04269fff14b0472e94e https://www.encodeproject.org/files/ENCFF345BML/@@download/ENCFF345BML.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF587VWF bigWig signal p-value ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF373FVR, ENCFF587REM 444663766 ENCODE Processing Pipeline e17ed6a04e69924ade56079e1d74f82c https://www.encodeproject.org/files/ENCFF587VWF/@@download/ENCFF587VWF.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF073OGC bigWig fold change over control ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF373FVR, ENCFF587REM 302126215 ENCODE Processing Pipeline 0917aca57e37707091fcabf628c0b5b2 https://www.encodeproject.org/files/ENCFF073OGC/@@download/ENCFF073OGC.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF379KOF bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108EFL, ENCFF373FVR, ENCFF587REM 4099109 ENCODE Processing Pipeline af5c8974728d74ee24df4927bd5054fd https://www.encodeproject.org/files/ENCFF379KOF/@@download/ENCFF379KOF.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF586IPW bigBed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520BPM 4500697 ENCODE Processing Pipeline 3d9bcfc01ef1867698a631bab6e6d3a1 https://www.encodeproject.org/files/ENCFF586IPW/@@download/ENCFF586IPW.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF527RGJ bed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF379KOF, ENCFF520BPM, ENCFF820XSG 663450 ENCODE Processing Pipeline c73c3ed0d619a8a3d5cb1f076dba5ad8 https://www.encodeproject.org/files/ENCFF527RGJ/@@download/ENCFF527RGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF686ARC bigWig signal p-value ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF587REM 343364217 ENCODE Processing Pipeline c63302329beb81332765319a0fed6dac https://www.encodeproject.org/files/ENCFF686ARC/@@download/ENCFF686ARC.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF820XSG bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF587REM 3409067 ENCODE Processing Pipeline 5d8b401c22832a544d749ac4071014be https://www.encodeproject.org/files/ENCFF820XSG/@@download/ENCFF820XSG.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF897JOG bigWig fold change over control ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF373FVR 125867267 ENCODE Processing Pipeline dc3dbc8e7dd596fb74e296090c800192 https://www.encodeproject.org/files/ENCFF897JOG/@@download/ENCFF897JOG.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF668LIA bigWig signal p-value ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF373FVR 334704183 ENCODE Processing Pipeline 56cc7ca0664be329525f89c27f762aa6 https://www.encodeproject.org/files/ENCFF668LIA/@@download/ENCFF668LIA.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF915KEN bigBed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF820XSG 7138141 ENCODE Processing Pipeline e68a7da8b3036240720a22dd57f4909e https://www.encodeproject.org/files/ENCFF915KEN/@@download/ENCFF915KEN.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF520BPM bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF373FVR 2080267 ENCODE Processing Pipeline a2ad83f7f53d0ef17f4178ba6b549d57 https://www.encodeproject.org/files/ENCFF520BPM/@@download/ENCFF520BPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF881MNC bigBed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF379KOF 8501908 ENCODE Processing Pipeline 4c583202af43492a04b9270491b0f8bf https://www.encodeproject.org/files/ENCFF881MNC/@@download/ENCFF881MNC.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF401WCM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF527RGJ 1005715 ENCODE Processing Pipeline ac6cecb957ad374e494b4e957cd85626 https://www.encodeproject.org/files/ENCFF401WCM/@@download/ENCFF401WCM.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000WCJ bam alignments ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WCO 133370281 Sherman Weissman, Yale b0f751708adbdee8cf0f6a2b44662129 https://www.encodeproject.org/files/ENCFF000WCJ/@@download/ENCFF000WCJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCK bam alignments ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WCU 159927609 Sherman Weissman, Yale 891ca9871128c2587420673385518298 https://www.encodeproject.org/files/ENCFF000WCK/@@download/ENCFF000WCK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCL bigBed narrowPeak peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFC 76792 Sherman Weissman, Yale 05152e9531c2b7d9714df97cd88823e0 https://www.encodeproject.org/files/ENCFF000WCL/@@download/ENCFF000WCL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCM bigWig signal ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 276401556 Sherman Weissman, Yale 2f61e437109877f29572a6301d4e4eb7 https://www.encodeproject.org/files/ENCFF000WCM/@@download/ENCFF000WCM.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000WCO fastq reads ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 110619624 Sherman Weissman, Yale a2b3be3ed878ba602c3a5b36aa6df5fe https://www.encodeproject.org/files/ENCFF000WCO/@@download/ENCFF000WCO.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF000WCU fastq reads ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 125106381 Sherman Weissman, Yale fd4810431b7594cd2e071014d54b0a86 https://www.encodeproject.org/files/ENCFF000WCU/@@download/ENCFF000WCU.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWV/ released biological replicates with identical biosample insufficient read length ENCFF001VFC bed narrowPeak peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 3005 Sherman Weissman, Yale 55303d7ae28fe2d1d75e69513270194f https://www.encodeproject.org/files/ENCFF001VFC/@@download/ENCFF001VFC.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CPJ bed narrowPeak optimal idr thresholded peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 4779 ENCODE Consortium Analysis Working Group 712b70baad14c99c3a3b0acacf502ae7 https://www.encodeproject.org/files/ENCFF002CPJ/@@download/ENCFF002CPJ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF430FNU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CPJ 86276 ENCODE Consortium 0a0051e97fb2c29a853eafdada853e03 https://www.encodeproject.org/files/ENCFF430FNU/@@download/ENCFF430FNU.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000QKB bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 303331632 Richard Myers, HAIB e0837fec24ce66b8170987618c2f3212 https://www.encodeproject.org/files/ENCFF000QKB/@@download/ENCFF000QKB.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKC bigBed broadPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UME 599837 Richard Myers, HAIB 77f3d828340eed4d06c2ca51309ca427 https://www.encodeproject.org/files/ENCFF000QKC/@@download/ENCFF000QKC.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKD bigBed broadPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UMD 231287 Richard Myers, HAIB f7ff890343f10cae9ed42cc7c2eb60b8 https://www.encodeproject.org/files/ENCFF000QKD/@@download/ENCFF000QKD.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKE bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 635311224 Richard Myers, HAIB b421f68480e06961bfc95efd8ec9557b https://www.encodeproject.org/files/ENCFF000QKE/@@download/ENCFF000QKE.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKG bigWig raw signal ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 26670095 Richard Myers, HAIB 8c353db96c88331df83bd2c5831cd1d7 https://www.encodeproject.org/files/ENCFF000QKG/@@download/ENCFF000QKG.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKH bigWig raw signal ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 4443884 Richard Myers, HAIB 7d1424ec500c2406e16aeda1a6dfa9fa https://www.encodeproject.org/files/ENCFF000QKH/@@download/ENCFF000QKH.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKJ fastq reads ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 277768003 Richard Myers, HAIB 5071dc49ea385d8ffcde4c3d0e3e7e91 https://www.encodeproject.org/files/ENCFF000QKJ/@@download/ENCFF000QKJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000QKK fastq reads ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 657890473 Richard Myers, HAIB fea12e86b688cfb06465f1c1d4d6bbd5 https://www.encodeproject.org/files/ENCFF000QKK/@@download/ENCFF000QKK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF001UMD bed broadPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 1 120611 Richard Myers, HAIB ef9106ed675a4543afaeaa68cad36c2a https://www.encodeproject.org/files/ENCFF001UMD/@@download/ENCFF001UMD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF001UME bed broadPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 1 383870 Richard Myers, HAIB 646e15a4bc1fecc7b9e6971f6d8bfbae https://www.encodeproject.org/files/ENCFF001UME/@@download/ENCFF001UME.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF002CMW bed narrowPeak optimal idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 255495 ENCODE Consortium Analysis Working Group ac07a1c66425f00441835fc502af0c71 https://www.encodeproject.org/files/ENCFF002CMW/@@download/ENCFF002CMW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF524QRO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMW 518952 ENCODE Consortium 9c1a6b186e316b1742054273f548508d https://www.encodeproject.org/files/ENCFF524QRO/@@download/ENCFF524QRO.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF543BDT bam unfiltered alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKJ, ENCFF643CGH 352412702 ENCODE Processing Pipeline 4c3d6367b9457ca5bbfaee3cdeef9c8b https://www.encodeproject.org/files/ENCFF543BDT/@@download/ENCFF543BDT.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF044TAL bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKJ, ENCFF643CGH 169814671 ENCODE Processing Pipeline c9b5f63070b8e5e1254c02bfb40d97d2 https://www.encodeproject.org/files/ENCFF044TAL/@@download/ENCFF044TAL.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF782TYI bam unfiltered alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKK, ENCFF643CGH 771561431 ENCODE Processing Pipeline a5f350707d59af5e195cd5df64342ae6 https://www.encodeproject.org/files/ENCFF782TYI/@@download/ENCFF782TYI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF651HPM bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKK, ENCFF643CGH 270423140 ENCODE Processing Pipeline 97698697152df239505bc2c050dffd49 https://www.encodeproject.org/files/ENCFF651HPM/@@download/ENCFF651HPM.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF397WYE bam unfiltered alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKJ, ENCFF807MUK 353138347 ENCODE Processing Pipeline b75e326fd6f3640c8727cddfe26b302b https://www.encodeproject.org/files/ENCFF397WYE/@@download/ENCFF397WYE.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF374QJL bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKJ, ENCFF807MUK 166901482 ENCODE Processing Pipeline 641987233cf859928d06dd5e7306e296 https://www.encodeproject.org/files/ENCFF374QJL/@@download/ENCFF374QJL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF985HYK bam unfiltered alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKK, ENCFF807MUK 770939603 ENCODE Processing Pipeline d2b6792e370fd3f88d9aadc90d3d9c9f https://www.encodeproject.org/files/ENCFF985HYK/@@download/ENCFF985HYK.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF974OCA bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKK, ENCFF807MUK 270634558 ENCODE Processing Pipeline ad27b4d06443569067b685bffac04e51 https://www.encodeproject.org/files/ENCFF974OCA/@@download/ENCFF974OCA.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF075WWP bigWig signal p-value ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651HPM, ENCFF772PJM 217958466 ENCODE Processing Pipeline 0599efd0f47ec55ab5449832f86b375c https://www.encodeproject.org/files/ENCFF075WWP/@@download/ENCFF075WWP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF167RTT bigWig signal p-value ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044TAL, ENCFF772PJM 154449335 ENCODE Processing Pipeline 28a511f6c969f0e46642fddaa7b76154 https://www.encodeproject.org/files/ENCFF167RTT/@@download/ENCFF167RTT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF315PCN bigWig signal p-value ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044TAL, ENCFF651HPM, ENCFF772PJM 206277255 ENCODE Processing Pipeline 798e2d6d7705e9a2785d6a21ea6bf67a https://www.encodeproject.org/files/ENCFF315PCN/@@download/ENCFF315PCN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF654LSD bigWig fold change over control ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044TAL, ENCFF651HPM, ENCFF772PJM 176061920 ENCODE Processing Pipeline ca038cfeb126a15a9a1d33988513ff2e https://www.encodeproject.org/files/ENCFF654LSD/@@download/ENCFF654LSD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF381ZVE bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651HPM, ENCFF772PJM 3454051 ENCODE Processing Pipeline f078899340498ea6c7478561f691dc3f https://www.encodeproject.org/files/ENCFF381ZVE/@@download/ENCFF381ZVE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF371NVU bed narrowPeak conservative idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100YJH, ENCFF203XPP, ENCFF381ZVE, ENCFF419RSJ 79747 ENCODE Processing Pipeline 629c951b387e804bb8e8dff059b38051 https://www.encodeproject.org/files/ENCFF371NVU/@@download/ENCFF371NVU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF160WGC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF371NVU 192553 ENCODE Processing Pipeline 3966947165825253d5f77f45f3681967 https://www.encodeproject.org/files/ENCFF160WGC/@@download/ENCFF160WGC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF439VDJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF953BTB 518102 ENCODE Processing Pipeline e70628eaa6d699e5c06772e73636daec https://www.encodeproject.org/files/ENCFF439VDJ/@@download/ENCFF439VDJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF203XPP bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF044TAL, ENCFF651HPM, ENCFF772PJM 4446136 ENCODE Processing Pipeline ea2672c46404418e5d6d7a259ed4b96e https://www.encodeproject.org/files/ENCFF203XPP/@@download/ENCFF203XPP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF469QBZ bigWig fold change over control ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044TAL, ENCFF772PJM 78425312 ENCODE Processing Pipeline f1953f9b61f0b23a87db45c0939e66c5 https://www.encodeproject.org/files/ENCFF469QBZ/@@download/ENCFF469QBZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF100YJH bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044TAL, ENCFF772PJM 1789536 ENCODE Processing Pipeline fbf283ba506834372e630238b384c39e https://www.encodeproject.org/files/ENCFF100YJH/@@download/ENCFF100YJH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF570LZA bigBed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF381ZVE 7632821 ENCODE Processing Pipeline 8c5083c0a7eeb26abfec2207a0c75944 https://www.encodeproject.org/files/ENCFF570LZA/@@download/ENCFF570LZA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF924PLW bigBed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF203XPP 9883640 ENCODE Processing Pipeline 67150ef851e08c0dbad9e602351b591b https://www.encodeproject.org/files/ENCFF924PLW/@@download/ENCFF924PLW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF953BTB bed narrowPeak optimal idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100YJH, ENCFF203XPP, ENCFF381ZVE, ENCFF419RSJ 274304 ENCODE Processing Pipeline 5e0d8c3af8f5ee9de64681feb5dc4bfe https://www.encodeproject.org/files/ENCFF953BTB/@@download/ENCFF953BTB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF674DGV bigWig fold change over control ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651HPM, ENCFF772PJM 109602790 ENCODE Processing Pipeline 0c707e906d7c2ff0156d056bbe355c5c https://www.encodeproject.org/files/ENCFF674DGV/@@download/ENCFF674DGV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF821EZE bigBed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF100YJH 3755275 ENCODE Processing Pipeline d69bcff8a3f5d5e0e5755bb0f185ac36 https://www.encodeproject.org/files/ENCFF821EZE/@@download/ENCFF821EZE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF366SGW bigWig signal p-value ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF974OCA 170261201 ENCODE Processing Pipeline 3b1f81381021d057203c375826adfb97 https://www.encodeproject.org/files/ENCFF366SGW/@@download/ENCFF366SGW.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF688PRD bigWig signal p-value ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374QJL, ENCFF750MIM 155638470 ENCODE Processing Pipeline 59970786685fea7aec0a6c0a02a9f50b https://www.encodeproject.org/files/ENCFF688PRD/@@download/ENCFF688PRD.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF688PET bigWig fold change over control ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF974OCA 109352833 ENCODE Processing Pipeline 371a1f2af90929a3173ca03defc51e5d https://www.encodeproject.org/files/ENCFF688PET/@@download/ENCFF688PET.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF265UDZ bigWig signal p-value ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF374QJL, ENCFF750MIM, ENCFF974OCA 206239784 ENCODE Processing Pipeline a1a9a74b32c64e36e13ba604563b8dbf https://www.encodeproject.org/files/ENCFF265UDZ/@@download/ENCFF265UDZ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF608RBZ bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF974OCA 3450296 ENCODE Processing Pipeline 3f12a4be35f1c4062bfcc2b1a3d8e56e https://www.encodeproject.org/files/ENCFF608RBZ/@@download/ENCFF608RBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF475ICG bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374QJL, ENCFF750MIM 1785632 ENCODE Processing Pipeline 985f27c035f182ff8942dea5b697eda7 https://www.encodeproject.org/files/ENCFF475ICG/@@download/ENCFF475ICG.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF735VYZ bigWig fold change over control ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374QJL, ENCFF750MIM 79659303 ENCODE Processing Pipeline b93b775536eb8f773ddc98c5fdd8b357 https://www.encodeproject.org/files/ENCFF735VYZ/@@download/ENCFF735VYZ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF480ZET bigWig fold change over control ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF374QJL, ENCFF750MIM, ENCFF974OCA 176388335 ENCODE Processing Pipeline 4692fd23387bf4c0b5b4158750d6a6c7 https://www.encodeproject.org/files/ENCFF480ZET/@@download/ENCFF480ZET.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF949CCF bigBed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF608RBZ 7625007 ENCODE Processing Pipeline 64d2d9a22058c7e3befa069035ecb1db https://www.encodeproject.org/files/ENCFF949CCF/@@download/ENCFF949CCF.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF391EZP bigBed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF475ICG 3766872 ENCODE Processing Pipeline 463639b36d9a7bca83f3263406067911 https://www.encodeproject.org/files/ENCFF391EZP/@@download/ENCFF391EZP.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF100JMN bed narrowPeak conservative idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF475ICG, ENCFF608RBZ, ENCFF897DAT 81332 ENCODE Processing Pipeline b6e9d62406a49da4bf266c7a07445902 https://www.encodeproject.org/files/ENCFF100JMN/@@download/ENCFF100JMN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF926FUM bed narrowPeak optimal idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF475ICG, ENCFF608RBZ, ENCFF897DAT 268837 ENCODE Processing Pipeline 73708b5a1b2700584fc477fdee757ee3 https://www.encodeproject.org/files/ENCFF926FUM/@@download/ENCFF926FUM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF897DAT bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF374QJL, ENCFF750MIM, ENCFF974OCA 4473636 ENCODE Processing Pipeline c14c00910a3b214c2e00ba89e45afb83 https://www.encodeproject.org/files/ENCFF897DAT/@@download/ENCFF897DAT.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF164HWB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF100JMN 194921 ENCODE Processing Pipeline 5792bd7c6c5e7b1819e47b6308938fdf https://www.encodeproject.org/files/ENCFF164HWB/@@download/ENCFF164HWB.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF823KMF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF926FUM 520358 ENCODE Processing Pipeline 30d13bce5ee5a789b4fe59f3511b3c64 https://www.encodeproject.org/files/ENCFF823KMF/@@download/ENCFF823KMF.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF855RCD bigBed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF897DAT 9931657 ENCODE Processing Pipeline 2ded87aec0595cfd73c59336e98a4a39 https://www.encodeproject.org/files/ENCFF855RCD/@@download/ENCFF855RCD.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF000OUY bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OVI 607942828 Richard Myers, HAIB f0fa1faae284a01ad31ecc1bc687016f https://www.encodeproject.org/files/ENCFF000OUY/@@download/ENCFF000OUY.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF000OUZ bigBed broadPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCU 170332 Richard Myers, HAIB 058172096dd6ae2e56154b513c1cb412 https://www.encodeproject.org/files/ENCFF000OUZ/@@download/ENCFF000OUZ.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF000OVA bigBed broadPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCV 369913 Richard Myers, HAIB 6a07568e15c75885da47c579bbd0a65e https://www.encodeproject.org/files/ENCFF000OVA/@@download/ENCFF000OVA.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF000OVD bigWig raw signal ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 3130115 Richard Myers, HAIB d07e3c9eb85a127f0e7f2634819fc159 https://www.encodeproject.org/files/ENCFF000OVD/@@download/ENCFF000OVD.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OVE bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OVV 2752260262 Richard Myers, HAIB 1767122b5363feb43f22ac1c3d73764e https://www.encodeproject.org/files/ENCFF000OVE/@@download/ENCFF000OVE.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF000OVF bigWig raw signal ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 64552481 Richard Myers, HAIB cdb9374d69d754d03c2dc64628a05110 https://www.encodeproject.org/files/ENCFF000OVF/@@download/ENCFF000OVF.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OVI fastq reads ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 506778596 Richard Myers, HAIB f30bc8b7f194e81aa3ba1086149d70f6 https://www.encodeproject.org/files/ENCFF000OVI/@@download/ENCFF000OVI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF000OVV fastq reads ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 3485830455 Richard Myers, HAIB 0e84aa12be3eb7c6878e165ebb72cf23 https://www.encodeproject.org/files/ENCFF000OVV/@@download/ENCFF000OVV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OSP/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF001UCU bed broadPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 75044 Richard Myers, HAIB 9b07f998c4d8e52767dec935750873d0 https://www.encodeproject.org/files/ENCFF001UCU/@@download/ENCFF001UCU.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UCV bed broadPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 187569 Richard Myers, HAIB 2ec96245e8c7572fe86b76a92875a895 https://www.encodeproject.org/files/ENCFF001UCV/@@download/ENCFF001UCV.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJP bed narrowPeak optimal idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 250288 ENCODE Consortium Analysis Working Group 097300ddc73b049c220683a8ad25e146 https://www.encodeproject.org/files/ENCFF002CJP/@@download/ENCFF002CJP.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, missing derived_from ENCFF827CDG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJP 653973 ENCODE Consortium 3986c0292394b815faef86dd44362013 https://www.encodeproject.org/files/ENCFF827CDG/@@download/ENCFF827CDG.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF468ENY bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVI, ENCFF643CGH 460530578 ENCODE Processing Pipeline aa33520c81c2561895e94a27cf9ed2b1 https://www.encodeproject.org/files/ENCFF468ENY/@@download/ENCFF468ENY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF625KWC bam unfiltered alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVI, ENCFF643CGH 717914257 ENCODE Processing Pipeline 6e1efdac123d503962f9be233134fe2c https://www.encodeproject.org/files/ENCFF625KWC/@@download/ENCFF625KWC.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF624SNE bam unfiltered alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVV, ENCFF643CGH 4186360458 ENCODE Processing Pipeline 5a25b8d2091893a13a1bc8b7954780a8 https://www.encodeproject.org/files/ENCFF624SNE/@@download/ENCFF624SNE.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF221YIR bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVV, ENCFF643CGH 1871508687 ENCODE Processing Pipeline a479febde6ed2d31f346afd93e83ccb1 https://www.encodeproject.org/files/ENCFF221YIR/@@download/ENCFF221YIR.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF089XBD bam unfiltered alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVI, ENCFF807MUK 714910816 ENCODE Processing Pipeline a862f9d6b8340494a733b116e2555e84 https://www.encodeproject.org/files/ENCFF089XBD/@@download/ENCFF089XBD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF748LJL bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVI, ENCFF807MUK 460879304 ENCODE Processing Pipeline cb6e020d602d4f0060579ee1c8253e1f https://www.encodeproject.org/files/ENCFF748LJL/@@download/ENCFF748LJL.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF905QYS bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVV, ENCFF807MUK 1872124803 ENCODE Processing Pipeline 6eb098fbaddde8393e6ae6522d9fd6c3 https://www.encodeproject.org/files/ENCFF905QYS/@@download/ENCFF905QYS.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF600EYB bam unfiltered alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVV, ENCFF807MUK 4171160681 ENCODE Processing Pipeline 1b76c5fa7c45d257b7dc40198a9ad456 https://www.encodeproject.org/files/ENCFF600EYB/@@download/ENCFF600EYB.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF861YYY bigWig signal p-value ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF221YIR, ENCFF948LKH 548470358 ENCODE Processing Pipeline 273db64a0883a630f6604f5cdda2d991 https://www.encodeproject.org/files/ENCFF861YYY/@@download/ENCFF861YYY.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF370YJW bigWig signal p-value ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF468ENY, ENCFF948LKH 375982597 ENCODE Processing Pipeline e1b0b0efa185fd4d1466a8d35f432b0c https://www.encodeproject.org/files/ENCFF370YJW/@@download/ENCFF370YJW.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF352HWK bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF468ENY, ENCFF948LKH 4335696 ENCODE Processing Pipeline 071a4460014585e0e1447137b433a00f https://www.encodeproject.org/files/ENCFF352HWK/@@download/ENCFF352HWK.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF016DJT bigBed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF344CGB 11315407 ENCODE Processing Pipeline a5d47ea14365c6b1de9bb51bb8151c30 https://www.encodeproject.org/files/ENCFF016DJT/@@download/ENCFF016DJT.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF777AYI bigWig fold change over control ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF221YIR, ENCFF948LKH 706758045 ENCODE Processing Pipeline 6e21ad4834ef9473a5f688cc1536cd30 https://www.encodeproject.org/files/ENCFF777AYI/@@download/ENCFF777AYI.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF712YJK bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF221YIR, ENCFF948LKH 5120598 ENCODE Processing Pipeline 2172038e5b382a1bd86393684376bd66 https://www.encodeproject.org/files/ENCFF712YJK/@@download/ENCFF712YJK.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF824JON bigWig signal p-value ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF221YIR, ENCFF468ENY, ENCFF948LKH 550956649 ENCODE Processing Pipeline 613da3f6f490844e7127bd2c7bbc11cb https://www.encodeproject.org/files/ENCFF824JON/@@download/ENCFF824JON.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF088PUQ bed narrowPeak conservative idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF344CGB, ENCFF352HWK, ENCFF419RSJ, ENCFF712YJK 221075 ENCODE Processing Pipeline 426580ffcc9e3cc4935568c78de2972c https://www.encodeproject.org/files/ENCFF088PUQ/@@download/ENCFF088PUQ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF994PPP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF088PUQ 432796 ENCODE Processing Pipeline 9db924b89339475f862dff469c60b24f https://www.encodeproject.org/files/ENCFF994PPP/@@download/ENCFF994PPP.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF195SPX bigWig fold change over control ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF468ENY, ENCFF948LKH 275792328 ENCODE Processing Pipeline 726fae24160cc2dd874ce27957ee4f35 https://www.encodeproject.org/files/ENCFF195SPX/@@download/ENCFF195SPX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF243PSJ bed narrowPeak optimal idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF344CGB, ENCFF352HWK, ENCFF419RSJ, ENCFF712YJK 268805 ENCODE Processing Pipeline 7ca8e296ed81a8ede4969ea54007a197 https://www.encodeproject.org/files/ENCFF243PSJ/@@download/ENCFF243PSJ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF061XZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF243PSJ 601877 ENCODE Processing Pipeline 6f55d73ae9e0014231883131267b22ce https://www.encodeproject.org/files/ENCFF061XZZ/@@download/ENCFF061XZZ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF246ONG bigBed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF352HWK 10607786 ENCODE Processing Pipeline 66f3b4099936a0ad1871e3dc9dc13b3a https://www.encodeproject.org/files/ENCFF246ONG/@@download/ENCFF246ONG.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF699TEW bigBed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712YJK 11346905 ENCODE Processing Pipeline 1642f19a628b2b4204e2ab33656f00ad https://www.encodeproject.org/files/ENCFF699TEW/@@download/ENCFF699TEW.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF160JKQ bigWig fold change over control ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF221YIR, ENCFF468ENY, ENCFF948LKH 864960338 ENCODE Processing Pipeline ad4088d2a4cf94a4cebfbf662960ee64 https://www.encodeproject.org/files/ENCFF160JKQ/@@download/ENCFF160JKQ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF344CGB bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF221YIR, ENCFF468ENY, ENCFF948LKH 5457852 ENCODE Processing Pipeline 41f3ac95dbfdc1b9c4d6cff0307fd378 https://www.encodeproject.org/files/ENCFF344CGB/@@download/ENCFF344CGB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF325EUS bigWig fold change over control ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF748LJL 273017697 ENCODE Processing Pipeline 17e0a877872ecf00cd877fb592941c79 https://www.encodeproject.org/files/ENCFF325EUS/@@download/ENCFF325EUS.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF698ECO bigWig signal p-value ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF748LJL 476004485 ENCODE Processing Pipeline 4011954b8b14554f85e5be642c6d5932 https://www.encodeproject.org/files/ENCFF698ECO/@@download/ENCFF698ECO.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF238QMX bigWig signal p-value ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF905QYS 546606982 ENCODE Processing Pipeline c85100970c63f4f078730cea9005d472 https://www.encodeproject.org/files/ENCFF238QMX/@@download/ENCFF238QMX.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF610TKO bigWig signal p-value ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF748LJL, ENCFF905QYS 551152742 ENCODE Processing Pipeline 661830fdee93805554faa673c33ecbe2 https://www.encodeproject.org/files/ENCFF610TKO/@@download/ENCFF610TKO.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF168RPT bigWig fold change over control ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF905QYS 693363735 ENCODE Processing Pipeline 0286bdd9cb40c7cdaebc017dd8686571 https://www.encodeproject.org/files/ENCFF168RPT/@@download/ENCFF168RPT.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF299QBC bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF905QYS 4936211 ENCODE Processing Pipeline f3b583381aadd3ff4bf0f35c396944ba https://www.encodeproject.org/files/ENCFF299QBC/@@download/ENCFF299QBC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF569AEN bigBed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299QBC 11263268 ENCODE Processing Pipeline 0e3d3b5f4d7e67fbe8572051a06d94ce https://www.encodeproject.org/files/ENCFF569AEN/@@download/ENCFF569AEN.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF586ODD bigBed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF435PQI 11304781 ENCODE Processing Pipeline 5ecc50dc16f1312709239618346282d6 https://www.encodeproject.org/files/ENCFF586ODD/@@download/ENCFF586ODD.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF412RLU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF983OSG 424092 ENCODE Processing Pipeline a049ba668e3f3aadc2fd08ed537960bf https://www.encodeproject.org/files/ENCFF412RLU/@@download/ENCFF412RLU.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF038WUV bigWig fold change over control ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF748LJL, ENCFF905QYS 862141092 ENCODE Processing Pipeline e3fed29029f40420a00776ee1418f4ba https://www.encodeproject.org/files/ENCFF038WUV/@@download/ENCFF038WUV.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF120OKL bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF748LJL 4445050 ENCODE Processing Pipeline d6a9ced05b3809dde3a36c8b2649333f https://www.encodeproject.org/files/ENCFF120OKL/@@download/ENCFF120OKL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF963TZI bed narrowPeak optimal idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF120OKL, ENCFF299QBC, ENCFF435PQI 256893 ENCODE Processing Pipeline 3fbc18f78ff0a967465e5f4f920095e7 https://www.encodeproject.org/files/ENCFF963TZI/@@download/ENCFF963TZI.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF435PQI bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF748LJL, ENCFF905QYS 5517596 ENCODE Processing Pipeline 042277bded3072a79dcbb44bff5f00ab https://www.encodeproject.org/files/ENCFF435PQI/@@download/ENCFF435PQI.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF983OSG bed narrowPeak conservative idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF120OKL, ENCFF299QBC, ENCFF435PQI 215712 ENCODE Processing Pipeline af1b8cf743f7ab2a81581d9d108711f4 https://www.encodeproject.org/files/ENCFF983OSG/@@download/ENCFF983OSG.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF085VVL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF963TZI 583038 ENCODE Processing Pipeline 846529b6c91850fac38918b666058490 https://www.encodeproject.org/files/ENCFF085VVL/@@download/ENCFF085VVL.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF043AOU bigBed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF120OKL 10658286 ENCODE Processing Pipeline 063a61a3a1d94037ac9cd85a815954f4 https://www.encodeproject.org/files/ENCFF043AOU/@@download/ENCFF043AOU.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF000QJD bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QJR 724187758 Richard Myers, HAIB 74669be6c21ceba21af59d55793521d2 https://www.encodeproject.org/files/ENCFF000QJD/@@download/ENCFF000QJD.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJE bigBed broadPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001ULX 674780 Richard Myers, HAIB 6c3b4bc9ae7790f6bb17f0110edee937 https://www.encodeproject.org/files/ENCFF000QJE/@@download/ENCFF000QJE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJF bigBed broadPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULY 298311 Richard Myers, HAIB 66b669ebcf3d3cb04b9f2e3fedcf6239 https://www.encodeproject.org/files/ENCFF000QJF/@@download/ENCFF000QJF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJG bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QJP 371386073 Richard Myers, HAIB e85ef479abaaf0b72ad2c92585475f28 https://www.encodeproject.org/files/ENCFF000QJG/@@download/ENCFF000QJG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJI bigWig raw signal ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 24475555 Richard Myers, HAIB dac77fee84466087af8a45255cc16019 https://www.encodeproject.org/files/ENCFF000QJI/@@download/ENCFF000QJI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJJ bigWig raw signal ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 12319574 Richard Myers, HAIB bfef7f8ecf47825895bd756fc282dfaf https://www.encodeproject.org/files/ENCFF000QJJ/@@download/ENCFF000QJJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJP fastq reads ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 369345973 Richard Myers, HAIB 27bdde22561f8f839cb9bdfc64f77735 https://www.encodeproject.org/files/ENCFF000QJP/@@download/ENCFF000QJP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000QJR fastq reads ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 685037617 Richard Myers, HAIB 6ccc2c8fa001bf9a6f5aeed3f1e2f4ab https://www.encodeproject.org/files/ENCFF000QJR/@@download/ENCFF000QJR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF001ULX bed broadPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 385227 Richard Myers, HAIB 1bf5eda232c5803038281953c1f5f815 https://www.encodeproject.org/files/ENCFF001ULX/@@download/ENCFF001ULX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF001ULY bed broadPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 182030 Richard Myers, HAIB 28728a1c6d56dc0f6aed5a1a8a3fd40e https://www.encodeproject.org/files/ENCFF001ULY/@@download/ENCFF001ULY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF002CMV bed narrowPeak optimal idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 364508 ENCODE Consortium Analysis Working Group ed11b14aaf5f989b08e1da0a481d73cf https://www.encodeproject.org/files/ENCFF002CMV/@@download/ENCFF002CMV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF666MMS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMV 717859 ENCODE Consortium 3585b6877e15603117021503258aab50 https://www.encodeproject.org/files/ENCFF666MMS/@@download/ENCFF666MMS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF070DTB bam unfiltered alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QJP, ENCFF643CGH 442553986 ENCODE Processing Pipeline a92ddfef5b1d8576655fc9dbb711f7c9 https://www.encodeproject.org/files/ENCFF070DTB/@@download/ENCFF070DTB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF794ABP bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QJP, ENCFF643CGH 156295938 ENCODE Processing Pipeline 2fbab4694606a2a63232600c8c48b061 https://www.encodeproject.org/files/ENCFF794ABP/@@download/ENCFF794ABP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF523RSS bam unfiltered alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QJR, ENCFF643CGH 851221925 ENCODE Processing Pipeline bfb0152b5840ea90c2e9a014cb51fae4 https://www.encodeproject.org/files/ENCFF523RSS/@@download/ENCFF523RSS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF587WWS bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QJR, ENCFF643CGH 390081753 ENCODE Processing Pipeline bd69f335271c3f114e0efc2635c48416 https://www.encodeproject.org/files/ENCFF587WWS/@@download/ENCFF587WWS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF827PYV bam unfiltered alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QJP, ENCFF807MUK 441566854 ENCODE Processing Pipeline cb3e9d8e3846bbe4b059f50f3a74f4a2 https://www.encodeproject.org/files/ENCFF827PYV/@@download/ENCFF827PYV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF318WJA bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QJP, ENCFF807MUK 156405298 ENCODE Processing Pipeline bd64912922ada53dacb8b96e1fa0c470 https://www.encodeproject.org/files/ENCFF318WJA/@@download/ENCFF318WJA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF396PZE bam unfiltered alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QJR, ENCFF807MUK 849833942 ENCODE Processing Pipeline fab48bc6b23b6a2055c69ab2fd2ff77d https://www.encodeproject.org/files/ENCFF396PZE/@@download/ENCFF396PZE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF528NQV bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QJR, ENCFF807MUK 390305962 ENCODE Processing Pipeline bbc71c4b5a16af131fb5d2724205b0a6 https://www.encodeproject.org/files/ENCFF528NQV/@@download/ENCFF528NQV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF906YUY bigWig signal p-value ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF772PJM, ENCFF794ABP 185036989 ENCODE Processing Pipeline 5f75c67df481a47cf2bd9aee1fdd9f78 https://www.encodeproject.org/files/ENCFF906YUY/@@download/ENCFF906YUY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF210RNN bigWig signal p-value ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587WWS, ENCFF772PJM, ENCFF794ABP 212691572 ENCODE Processing Pipeline dc6a93cd72777988b584a2e20d37647c https://www.encodeproject.org/files/ENCFF210RNN/@@download/ENCFF210RNN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF234YTJ bigWig fold change over control ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF772PJM, ENCFF794ABP 81984391 ENCODE Processing Pipeline 723dcccf1b989a359bcf9cb48ff7e182 https://www.encodeproject.org/files/ENCFF234YTJ/@@download/ENCFF234YTJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF447MDX bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF409EYL 388533 ENCODE Processing Pipeline fe97e96495cf371e8701409d7a206793 https://www.encodeproject.org/files/ENCFF447MDX/@@download/ENCFF447MDX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF208OMR bigWig signal p-value ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF587WWS, ENCFF772PJM 206516586 ENCODE Processing Pipeline 3af4a8a1ff9d23f1066fa85aa238f77f https://www.encodeproject.org/files/ENCFF208OMR/@@download/ENCFF208OMR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF419ANM bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF587WWS, ENCFF772PJM 4055553 ENCODE Processing Pipeline bb48a448fb4f0cd6efb94258dc838c9e https://www.encodeproject.org/files/ENCFF419ANM/@@download/ENCFF419ANM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF225JGM bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587WWS, ENCFF772PJM, ENCFF794ABP 2618829 ENCODE Processing Pipeline 5bf1a09c6f0de305f7f65098c9df1f4d https://www.encodeproject.org/files/ENCFF225JGM/@@download/ENCFF225JGM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF375XWR bigWig fold change over control ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF587WWS, ENCFF772PJM, ENCFF794ABP 232271019 ENCODE Processing Pipeline 95edbd3a5c311cae8cf4dcf37df1a40c https://www.encodeproject.org/files/ENCFF375XWR/@@download/ENCFF375XWR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF774AJU bigBed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF225JGM 6003593 ENCODE Processing Pipeline 60eea8902b8616a173407ee13ba36cb3 https://www.encodeproject.org/files/ENCFF774AJU/@@download/ENCFF774AJU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF076UBM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF717KGR 652292 ENCODE Processing Pipeline 07ee5a73cb87af7fc3f97fbf45441e2a https://www.encodeproject.org/files/ENCFF076UBM/@@download/ENCFF076UBM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF910PEX bigWig fold change over control ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF587WWS, ENCFF772PJM 168312990 ENCODE Processing Pipeline f9c9fc6f7bd966f2b1bbbceb8f740455 https://www.encodeproject.org/files/ENCFF910PEX/@@download/ENCFF910PEX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF857POG bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF772PJM, ENCFF794ABP 1523381 ENCODE Processing Pipeline 44b833e6e54dd885d4d2e1197854c926 https://www.encodeproject.org/files/ENCFF857POG/@@download/ENCFF857POG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF409EYL bed narrowPeak conservative idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF225JGM, ENCFF419ANM, ENCFF419RSJ, ENCFF857POG 227872 ENCODE Processing Pipeline 93784a6db50bee1592770335f530509e https://www.encodeproject.org/files/ENCFF409EYL/@@download/ENCFF409EYL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF971IKF bigBed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF419ANM 9694081 ENCODE Processing Pipeline 6258b7f873214ac02d22ea62a34f8a0b https://www.encodeproject.org/files/ENCFF971IKF/@@download/ENCFF971IKF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF613TYX bigBed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF857POG 3192797 ENCODE Processing Pipeline 2f56b5d81cc2f380696ea32dd5bf8295 https://www.encodeproject.org/files/ENCFF613TYX/@@download/ENCFF613TYX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF717KGR bed narrowPeak optimal idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF225JGM, ENCFF419ANM, ENCFF419RSJ, ENCFF857POG 344249 ENCODE Processing Pipeline 265cbc2d514f989af73979fec5570bb3 https://www.encodeproject.org/files/ENCFF717KGR/@@download/ENCFF717KGR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF743JLH bigBed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF278MWT 6012600 ENCODE Processing Pipeline 405f1053bf09901dcf694d0dee8ef6ce https://www.encodeproject.org/files/ENCFF743JLH/@@download/ENCFF743JLH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF607WTO bigWig fold change over control ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF528NQV, ENCFF750MIM 168832089 ENCODE Processing Pipeline 760c9a6c2e3690d723dd39cb844a1918 https://www.encodeproject.org/files/ENCFF607WTO/@@download/ENCFF607WTO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF278MWT bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WJA, ENCFF528NQV, ENCFF750MIM 2624623 ENCODE Processing Pipeline 071924f44c9d6645241f8906cea6aa79 https://www.encodeproject.org/files/ENCFF278MWT/@@download/ENCFF278MWT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF931KGU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF774EUE 388840 ENCODE Processing Pipeline 398658437a8d446bc8649a5d893de215 https://www.encodeproject.org/files/ENCFF931KGU/@@download/ENCFF931KGU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF304OHJ bigWig signal p-value ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WJA, ENCFF528NQV, ENCFF750MIM 212783920 ENCODE Processing Pipeline e98a336074cf49a05b76f938f1697b7a https://www.encodeproject.org/files/ENCFF304OHJ/@@download/ENCFF304OHJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF738UPC bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF528NQV, ENCFF750MIM 4056488 ENCODE Processing Pipeline 78a14c1120d15e8f3b0da0e358904143 https://www.encodeproject.org/files/ENCFF738UPC/@@download/ENCFF738UPC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF459QHU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF334FMW 651695 ENCODE Processing Pipeline ad7a15aedd7d7b46c1f8cf1f6c015f9f https://www.encodeproject.org/files/ENCFF459QHU/@@download/ENCFF459QHU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF455JRF bigWig fold change over control ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WJA, ENCFF528NQV, ENCFF750MIM 230663812 ENCODE Processing Pipeline 24403d2519569161d687add81248377b https://www.encodeproject.org/files/ENCFF455JRF/@@download/ENCFF455JRF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF774EUE bed narrowPeak conservative idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF278MWT, ENCFF385JVK, ENCFF738UPC 228566 ENCODE Processing Pipeline 675c54383ff44c2863b42c0245f758f8 https://www.encodeproject.org/files/ENCFF774EUE/@@download/ENCFF774EUE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF258HVS bigWig signal p-value ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF528NQV, ENCFF750MIM 206749267 ENCODE Processing Pipeline 9ea50961f10780da671de971e8b42851 https://www.encodeproject.org/files/ENCFF258HVS/@@download/ENCFF258HVS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF913RHK bigWig signal p-value ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WJA, ENCFF750MIM 158681823 ENCODE Processing Pipeline 92ee063cf64868d17a8723603f0fe8af https://www.encodeproject.org/files/ENCFF913RHK/@@download/ENCFF913RHK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF385JVK bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WJA, ENCFF750MIM 1525708 ENCODE Processing Pipeline f93457e811729a1fdec4d62809e3091c https://www.encodeproject.org/files/ENCFF385JVK/@@download/ENCFF385JVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF611KET bigBed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF738UPC 9691697 ENCODE Processing Pipeline 4f151d73e8b8e9e8f7facee0ae0497f4 https://www.encodeproject.org/files/ENCFF611KET/@@download/ENCFF611KET.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF334FMW bed narrowPeak optimal idr thresholded peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF278MWT, ENCFF385JVK, ENCFF738UPC 343702 ENCODE Processing Pipeline c8c6a2b189f45df818d83179943cc412 https://www.encodeproject.org/files/ENCFF334FMW/@@download/ENCFF334FMW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF865LXB bigWig fold change over control ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WJA, ENCFF750MIM 81860279 ENCODE Processing Pipeline afa5280e35aa28c35faba53c8b1829a9 https://www.encodeproject.org/files/ENCFF865LXB/@@download/ENCFF865LXB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF932MSQ bigBed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF385JVK 3197706 ENCODE Processing Pipeline 50704a25c00738109b505645fa1025c1 https://www.encodeproject.org/files/ENCFF932MSQ/@@download/ENCFF932MSQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF000CBW bigBed broadPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE ENCFF001TAD 1094734 Bradley Bernstein, Broad d44aa4cc2c3cab602fbeffb21c142e10 https://www.encodeproject.org/files/ENCFF000CBW/@@download/ENCFF000CBW.bigBed hg19 archived control low read depth, low read length, inconsistent platforms ENCFF000CBX bam alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CCG 1334949559 Bradley Bernstein, Broad 726370ea7ee05faff9636fcd1a04f5a3 https://www.encodeproject.org/files/ENCFF000CBX/@@download/ENCFF000CBX.bam hg19 archived control low read depth, low read length, inconsistent platforms ENCFF000CBY bigWig signal ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 447582643 Bradley Bernstein, Broad d83921d6ff6802bf3fc9ae53fd17c3bb https://www.encodeproject.org/files/ENCFF000CBY/@@download/ENCFF000CBY.bigWig hg19 archived control low read depth, low read length, inconsistent platforms missing derived_from ENCFF000CCG fastq reads ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1420331036 Bradley Bernstein, Broad e4c1de88c85d2bf01bb031e64c425eb1 https://www.encodeproject.org/files/ENCFF000CCG/@@download/ENCFF000CCG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, inconsistent platforms ENCFF001TAD bed broadPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 628582 Bradley Bernstein, Broad 0efbf96719a76c17c4d2213cb1984d3e https://www.encodeproject.org/files/ENCFF001TAD/@@download/ENCFF001TAD.bed.gz hg19 archived control low read depth, low read length, inconsistent platforms missing derived_from ENCFF080YTJ bam unfiltered alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCG, ENCFF807MUK 1829885589 ENCODE Processing Pipeline 6441273280bdec44026971de8228bdc3 https://www.encodeproject.org/files/ENCFF080YTJ/@@download/ENCFF080YTJ.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF693CKU bam alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCG, ENCFF807MUK 1092910807 ENCODE Processing Pipeline c6e5d3cc485062d9a3123ef3cdae999a https://www.encodeproject.org/files/ENCFF693CKU/@@download/ENCFF693CKU.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF244MAQ bam alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCG, ENCFF643CGH 1092310548 ENCODE Processing Pipeline b4c13f4a912db6a00253f12ddbea3549 https://www.encodeproject.org/files/ENCFF244MAQ/@@download/ENCFF244MAQ.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF424MSI bam unfiltered alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCG, ENCFF643CGH 1841208472 ENCODE Processing Pipeline 805cd4c34653f5c8ecfdceab14858529 https://www.encodeproject.org/files/ENCFF424MSI/@@download/ENCFF424MSI.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF554KGC bigWig signal p-value ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF693CKU 371489959 ENCODE Processing Pipeline 8bc350778fa6d20d342ead51bc6cf23a https://www.encodeproject.org/files/ENCFF554KGC/@@download/ENCFF554KGC.bigWig hg19 released control low read depth, low read length, inconsistent platforms ENCFF101AKQ bed narrowPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF244MAQ, ENCFF392XRJ 4786243 ENCODE Processing Pipeline 891067dbd363d4d884d9ad25083196a0 https://www.encodeproject.org/files/ENCFF101AKQ/@@download/ENCFF101AKQ.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF326EXY bigBed narrowPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF101AKQ 11048705 ENCODE Processing Pipeline 4cbc6872303d9f19481dabeb222cb904 https://www.encodeproject.org/files/ENCFF326EXY/@@download/ENCFF326EXY.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF697TRA bigWig fold change over control ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF693CKU 422385569 ENCODE Processing Pipeline dbc239713de04fc940fa2fb8e00fd19e https://www.encodeproject.org/files/ENCFF697TRA/@@download/ENCFF697TRA.bigWig hg19 released control low read depth, low read length, inconsistent platforms ENCFF333VJJ bed narrowPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF693CKU 4843631 ENCODE Processing Pipeline 9d4599c7a81186ca87e0b18ec19be86f https://www.encodeproject.org/files/ENCFF333VJJ/@@download/ENCFF333VJJ.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF950GVK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF095WDB 132760 ENCODE Processing Pipeline a7d20ae734008103f6bcb49371b1f594 https://www.encodeproject.org/files/ENCFF950GVK/@@download/ENCFF950GVK.bigBed hg19 released control low read depth, low read length, inconsistent platforms ENCFF100AEJ bigWig fold change over control ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF244MAQ, ENCFF392XRJ 424088756 ENCODE Processing Pipeline 837b1ef39b2030de05d3c81794e9e6fe https://www.encodeproject.org/files/ENCFF100AEJ/@@download/ENCFF100AEJ.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF215HAP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF101AKQ, ENCFF419RSJ 35312 ENCODE Processing Pipeline 1764cd06cae0f8c7eb431a556791638a https://www.encodeproject.org/files/ENCFF215HAP/@@download/ENCFF215HAP.bed.gz GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF797EHT bigBed narrowPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF333VJJ 11049851 ENCODE Processing Pipeline 453c5359865146f4b54205df32c7a59b https://www.encodeproject.org/files/ENCFF797EHT/@@download/ENCFF797EHT.bigBed hg19 released control low read depth, low read length, inconsistent platforms ENCFF095WDB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF333VJJ 33315 ENCODE Processing Pipeline d915e632e6f6ce92b786fe167b7ed538 https://www.encodeproject.org/files/ENCFF095WDB/@@download/ENCFF095WDB.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF431KGM bigWig signal p-value ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF244MAQ, ENCFF392XRJ 371292349 ENCODE Processing Pipeline 25291a945cb14cb40c22b0d5beed7ce8 https://www.encodeproject.org/files/ENCFF431KGM/@@download/ENCFF431KGM.bigWig GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF937KSU bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF215HAP 140320 ENCODE Processing Pipeline e0df883bc7ee5c5b5d01ef4b44785a85 https://www.encodeproject.org/files/ENCFF937KSU/@@download/ENCFF937KSU.bigBed GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF000ZKH bam alignments ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZKJ 578318639 Peggy Farnham, USC 02264c6d0a9868153af4cbfe191dfaaa https://www.encodeproject.org/files/ENCFF000ZKH/@@download/ENCFF000ZKH.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZKI bigBed narrowPeak peaks ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQF 635588 Peggy Farnham, USC f3b013c35ead92a8ea9f9eef90b38c58 https://www.encodeproject.org/files/ENCFF000ZKI/@@download/ENCFF000ZKI.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZKJ fastq reads ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1089827926 Peggy Farnham, USC 6e2a8d0406ff97d0c72f6f3ce94efc15 https://www.encodeproject.org/files/ENCFF000ZKJ/@@download/ENCFF000ZKJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF000VHL/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZKL fastq reads ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1474901048 Peggy Farnham, USC 89f962097532d514f6318e8a4affc204 https://www.encodeproject.org/files/ENCFF000ZKL/@@download/ENCFF000ZKL.fastq.gz Illumina Genome Analyzer II /files/ENCFF000VHM/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZKN bigWig signal ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 463497759 Peggy Farnham, USC d42ad7e9974882e93ea2a67011a6ea3c https://www.encodeproject.org/files/ENCFF000ZKN/@@download/ENCFF000ZKN.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000ZKO bam alignments ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZKL 765280330 Peggy Farnham, USC b86317c688ae58bf962d3e0433fd971c https://www.encodeproject.org/files/ENCFF000ZKO/@@download/ENCFF000ZKO.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001VQF bed narrowPeak peaks ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 235608 Peggy Farnham, USC e61ff8573853711f7da720260fff5879 https://www.encodeproject.org/files/ENCFF001VQF/@@download/ENCFF001VQF.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CZJ bed narrowPeak optimal idr thresholded peaks ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 161667 ENCODE Consortium Analysis Working Group eef7fcc9c11b39e4bcfe336e069c07cd https://www.encodeproject.org/files/ENCFF002CZJ/@@download/ENCFF002CZJ.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF988PXT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZJ 469466 ENCODE Consortium 62a549038e5ef950863ec91b6b9494b4 https://www.encodeproject.org/files/ENCFF988PXT/@@download/ENCFF988PXT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XKA bam alignments ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKK 405301355 Michael Snyder, Stanford c5c9bb58c1d11d04a6c6206bf945525f https://www.encodeproject.org/files/ENCFF000XKA/@@download/ENCFF000XKA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKB bigBed narrowPeak peaks ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJC 501168 Michael Snyder, Stanford 201e3323ae6019e7c757313e4062f448 https://www.encodeproject.org/files/ENCFF000XKB/@@download/ENCFF000XKB.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XKC bam alignments ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKL 409193393 Michael Snyder, Stanford e243daf8377bdefc8dc18137be37ee3f https://www.encodeproject.org/files/ENCFF000XKC/@@download/ENCFF000XKC.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKE bigWig signal ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 287949987 Michael Snyder, Stanford 93d8e99fb00f4682c6c2eca1e92497bb https://www.encodeproject.org/files/ENCFF000XKE/@@download/ENCFF000XKE.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XKK fastq reads ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1070284955 Michael Snyder, Stanford 2641a21274fc1d2658213548b691683a https://www.encodeproject.org/files/ENCFF000XKK/@@download/ENCFF000XKK.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XKL fastq reads ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 892970270 Michael Snyder, Stanford d309f40f9e681e9a761c0e5747dadd21 https://www.encodeproject.org/files/ENCFF000XKL/@@download/ENCFF000XKL.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJC bed narrowPeak peaks ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 217722 Michael Snyder, Stanford b7aad5c4ad281863a9f3436fcc691f5a https://www.encodeproject.org/files/ENCFF001VJC/@@download/ENCFF001VJC.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CTA bed narrowPeak optimal idr thresholded peaks ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 118478 ENCODE Consortium Analysis Working Group 9cadb4570ee602e8e58dadebda65706f https://www.encodeproject.org/files/ENCFF002CTA/@@download/ENCFF002CTA.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF474ITP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTA 374515 ENCODE Consortium fa4f295da2d012125c608e4a3152f58b https://www.encodeproject.org/files/ENCFF474ITP/@@download/ENCFF474ITP.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000YBD fastq reads ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 511901584 Michael Snyder, Stanford af06059b3a87bc17c7bcc27de1304a66 https://www.encodeproject.org/files/ENCFF000YBD/@@download/ENCFF000YBD.fastq.gz Illumina Genome Analyzer /files/ENCFF000YAU/ released biological replicates with identical biosample insufficient read length ENCFF000YBE bam alignments ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YBD 650309115 Michael Snyder, Stanford 9c6fbadcfdfe33de2ea8a3cc61a61051 https://www.encodeproject.org/files/ENCFF000YBE/@@download/ENCFF000YBE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YBF bigBed narrowPeak peaks ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VLL 324853 Michael Snyder, Stanford cf1eee55f535dc218e932d302a060bba https://www.encodeproject.org/files/ENCFF000YBF/@@download/ENCFF000YBF.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YBG bam alignments ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YBR 781991578 Michael Snyder, Stanford 7cf5acc45836fb838b43f66aa4deee51 https://www.encodeproject.org/files/ENCFF000YBG/@@download/ENCFF000YBG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YBH bigWig signal ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 412539364 Michael Snyder, Stanford 85ec700027f3a35110fee84eb8f3386c https://www.encodeproject.org/files/ENCFF000YBH/@@download/ENCFF000YBH.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000YBI bam alignments ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YCV 678016430 Michael Snyder, Stanford 38c40a981052419b388e4008c1b3e7cb https://www.encodeproject.org/files/ENCFF000YBI/@@download/ENCFF000YBI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YBR fastq reads ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 639806062 Michael Snyder, Stanford d12bcc2eb5b2e30bb68c7515d4463648 https://www.encodeproject.org/files/ENCFF000YBR/@@download/ENCFF000YBR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YAZ/ released biological replicates with identical biosample insufficient read length ENCFF000YCV fastq reads ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 34 single-ended 559375137 Michael Snyder, Stanford b18d03ed720179cc659062302ac76200 https://www.encodeproject.org/files/ENCFF000YCV/@@download/ENCFF000YCV.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VLL bed narrowPeak peaks ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 106244 Michael Snyder, Stanford e2f0b17b8e0b9351975ec72387be8285 https://www.encodeproject.org/files/ENCFF001VLL/@@download/ENCFF001VLL.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CVF bed narrowPeak optimal idr thresholded peaks ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 258619 ENCODE Consortium Analysis Working Group 9453bb0f5acff506b2fafabd9f719126 https://www.encodeproject.org/files/ENCFF002CVF/@@download/ENCFF002CVF.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF476GWR bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVF 678980 ENCODE Consortium 37ed8a4f137550360e808a8fc3e47abf https://www.encodeproject.org/files/ENCFF476GWR/@@download/ENCFF476GWR.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WXU bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WYW 865509431 Peggy Farnham, USC 3ff2758618a3051c7f44804bc9576f53 https://www.encodeproject.org/files/ENCFF000WXU/@@download/ENCFF000WXU.bam hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF000WXV bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001VHM 2194565 Peggy Farnham, USC 53fe60b4c531ac17046ac5c8a7c1f734 https://www.encodeproject.org/files/ENCFF000WXV/@@download/ENCFF000WXV.bigBed hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF000WXX bigWig signal ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000WXU, ENCFF000WXZ 617601199 Peggy Farnham, USC 5aa4950430e8b9783888c9309eff5a64 https://www.encodeproject.org/files/ENCFF000WXX/@@download/ENCFF000WXX.bigWig hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF000WXZ bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WYV 1006420854 Peggy Farnham, USC 00283d2677e1cc3156acab1b25715866 https://www.encodeproject.org/files/ENCFF000WXZ/@@download/ENCFF000WXZ.bam hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF000WYV fastq reads ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 2401478505 Peggy Farnham, USC 02cb1977de3da448f330377c4f367554 https://www.encodeproject.org/files/ENCFF000WYV/@@download/ENCFF000WYV.fastq.gz Illumina Genome Analyzer /files/ENCFF000WXY/ released control low read depth, low read length, borderline replicate concordance, inconsistent control read length ENCFF000WYW fastq reads ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 2995295031 Peggy Farnham, USC 9003064b4528bfe51dee3d5d4119e4ed https://www.encodeproject.org/files/ENCFF000WYW/@@download/ENCFF000WYW.fastq.gz Illumina Genome Analyzer /files/ENCFF000WXY/ released control low read depth, low read length, borderline replicate concordance, inconsistent control read length ENCFF001VHM bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000WXU, ENCFF000WXZ 835022 Peggy Farnham, USC cbcef2645811cf259f9bcf99be4e9c41 https://www.encodeproject.org/files/ENCFF001VHM/@@download/ENCFF001VHM.bed.gz hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF002CRN bed narrowPeak optimal idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000WXU, ENCFF000WXZ 500142 ENCODE Consortium Analysis Working Group 1e87827c15e1ffa73eec27cc3d1a1347 https://www.encodeproject.org/files/ENCFF002CRN/@@download/ENCFF002CRN.bed.gz hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF569OGW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF002CRN 1200914 ENCODE Consortium 27a3a74c91e17fa9acfc5d32cddca42e https://www.encodeproject.org/files/ENCFF569OGW/@@download/ENCFF569OGW.bigBed hg19 archived control low read depth, low read length, borderline replicate concordance ENCFF217TNK bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WYV, ENCFF807MUK 1787470026 ENCODE Processing Pipeline 6f8f3ac85e058e1ed671b827ce09404d https://www.encodeproject.org/files/ENCFF217TNK/@@download/ENCFF217TNK.bam hg19 released control low read depth, low read length, borderline replicate concordance ENCFF696JTD bam unfiltered alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WYW, ENCFF807MUK 3394715450 ENCODE Processing Pipeline f92882918360dbcf252636d4e8957150 https://www.encodeproject.org/files/ENCFF696JTD/@@download/ENCFF696JTD.bam hg19 released control low read depth, low read length, borderline replicate concordance ENCFF805TPT bam unfiltered alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WYV, ENCFF807MUK 2948477259 ENCODE Processing Pipeline 9b73199e74b04f0eff3f17f25a1a43bf https://www.encodeproject.org/files/ENCFF805TPT/@@download/ENCFF805TPT.bam hg19 released control low read depth, low read length, borderline replicate concordance ENCFF362FIB bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WYW, ENCFF807MUK 1430859578 ENCODE Processing Pipeline b2ef725dc23f8265af127a46d1f11eb4 https://www.encodeproject.org/files/ENCFF362FIB/@@download/ENCFF362FIB.bam hg19 released control low read depth, low read length, borderline replicate concordance ENCFF780BOR bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF588DFT 12971743 ENCODE Processing Pipeline 6fade6cf0b336aeca49ea6e47b46390f https://www.encodeproject.org/files/ENCFF780BOR/@@download/ENCFF780BOR.bigBed hg19 released control low read depth, low read length, borderline replicate concordance ENCFF210BOH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF642DXY 447723 ENCODE Processing Pipeline 4f178da9b0c943303e072f9c9bc21c65 https://www.encodeproject.org/files/ENCFF210BOH/@@download/ENCFF210BOH.bigBed hg19 released control low read depth, low read length, borderline replicate concordance ENCFF721FYE bed narrowPeak optimal idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF577OXM, ENCFF588DFT, ENCFF736TVE 546570 ENCODE Processing Pipeline e683f117e45e4e61bdd765e45e363858 https://www.encodeproject.org/files/ENCFF721FYE/@@download/ENCFF721FYE.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF469SQU bigWig signal p-value ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF362FIB, ENCFF549MIW 460578248 ENCODE Processing Pipeline daa807939178d8694f5389ff60a1dcc7 https://www.encodeproject.org/files/ENCFF469SQU/@@download/ENCFF469SQU.bigWig hg19 released control low read depth, low read length, borderline replicate concordance ENCFF743EJD bigWig signal p-value ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF217TNK, ENCFF362FIB, ENCFF549MIW 451076833 ENCODE Processing Pipeline 77a3fcd3dd28fe3977d232bab63e0e46 https://www.encodeproject.org/files/ENCFF743EJD/@@download/ENCFF743EJD.bigWig hg19 released control low read depth, low read length, borderline replicate concordance ENCFF116IAW bigWig fold change over control ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF217TNK, ENCFF362FIB, ENCFF549MIW 1081797310 ENCODE Processing Pipeline 1ea71d9af00c3e9fedf8de0f1910ed4b https://www.encodeproject.org/files/ENCFF116IAW/@@download/ENCFF116IAW.bigWig hg19 released control low read depth, low read length, borderline replicate concordance ENCFF736TVE bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF217TNK, ENCFF549MIW 7089479 ENCODE Processing Pipeline d8b43446bf365191c7099b2922a953e5 https://www.encodeproject.org/files/ENCFF736TVE/@@download/ENCFF736TVE.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF554WRS bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF736TVE 12796193 ENCODE Processing Pipeline 108b4e973cc3327d6680f73ea2eba2c0 https://www.encodeproject.org/files/ENCFF554WRS/@@download/ENCFF554WRS.bigBed hg19 released control low read depth, low read length, borderline replicate concordance ENCFF046VYV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF721FYE 987809 ENCODE Processing Pipeline 0883da9b386ea5aa905fcf25c2723290 https://www.encodeproject.org/files/ENCFF046VYV/@@download/ENCFF046VYV.bigBed hg19 released control low read depth, low read length, borderline replicate concordance ENCFF588DFT bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF217TNK, ENCFF362FIB, ENCFF549MIW 7348922 ENCODE Processing Pipeline df08b999266d09862b3cf73d8db06e9a https://www.encodeproject.org/files/ENCFF588DFT/@@download/ENCFF588DFT.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF131MAC bigWig fold change over control ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF362FIB, ENCFF549MIW 616942157 ENCODE Processing Pipeline eba56663dcabb8519fb4321bac3297cd https://www.encodeproject.org/files/ENCFF131MAC/@@download/ENCFF131MAC.bigWig hg19 released control low read depth, low read length, borderline replicate concordance ENCFF348RDX bigWig signal p-value ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF217TNK, ENCFF549MIW 458917127 ENCODE Processing Pipeline bb56e904510982fb51d4b86478225ed3 https://www.encodeproject.org/files/ENCFF348RDX/@@download/ENCFF348RDX.bigWig hg19 released control low read depth, low read length, borderline replicate concordance ENCFF367CIY bigWig fold change over control ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF217TNK, ENCFF549MIW 705812270 ENCODE Processing Pipeline c0eedcb2ddcf4b146b37027ca19059ee https://www.encodeproject.org/files/ENCFF367CIY/@@download/ENCFF367CIY.bigWig hg19 released control low read depth, low read length, borderline replicate concordance ENCFF429UOR bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF577OXM 13157464 ENCODE Processing Pipeline ceb68edd44ace14887eb66a013c06902 https://www.encodeproject.org/files/ENCFF429UOR/@@download/ENCFF429UOR.bigBed hg19 released control low read depth, low read length, borderline replicate concordance ENCFF577OXM bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF362FIB, ENCFF549MIW 6829608 ENCODE Processing Pipeline 909ed7f861a4ef988a2e60cdbbc730c4 https://www.encodeproject.org/files/ENCFF577OXM/@@download/ENCFF577OXM.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF642DXY bed narrowPeak conservative idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF577OXM, ENCFF588DFT, ENCFF736TVE 202278 ENCODE Processing Pipeline 0baad2b4a05a5ac8f33413de3e5840b1 https://www.encodeproject.org/files/ENCFF642DXY/@@download/ENCFF642DXY.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF592HXS bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WYW, ENCFF643CGH 1358555541 ENCODE Processing Pipeline 3f582636110318714b0f698500cdb17c https://www.encodeproject.org/files/ENCFF592HXS/@@download/ENCFF592HXS.bam GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF858WNV bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WYV, ENCFF643CGH 1656514279 ENCODE Processing Pipeline bfb743b961419fa09f1452c01b8c24db https://www.encodeproject.org/files/ENCFF858WNV/@@download/ENCFF858WNV.bam GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF822NCG bigWig signal p-value ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF144WYV, ENCFF592HXS 459607111 ENCODE Processing Pipeline b748c12658ad57d82ffe4ebe473f7877 https://www.encodeproject.org/files/ENCFF822NCG/@@download/ENCFF822NCG.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF682EGL bigWig signal p-value ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF144WYV, ENCFF858WNV 456360537 ENCODE Processing Pipeline 6765d60f0af954136686ec2d05eb99d6 https://www.encodeproject.org/files/ENCFF682EGL/@@download/ENCFF682EGL.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF332RNC bigWig signal p-value ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF144WYV, ENCFF592HXS, ENCFF858WNV 434904963 ENCODE Processing Pipeline 7c7557c3237ea3cc48ce4f9efe241b1d https://www.encodeproject.org/files/ENCFF332RNC/@@download/ENCFF332RNC.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF193CWW bigWig fold change over control ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF144WYV, ENCFF592HXS 609177276 ENCODE Processing Pipeline 5fb80ed06ef2c118ecb75929fb387108 https://www.encodeproject.org/files/ENCFF193CWW/@@download/ENCFF193CWW.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF510BXY bigWig fold change over control ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF144WYV, ENCFF858WNV 697309374 ENCODE Processing Pipeline c3469d21d198796d56205e5110bd5c8f https://www.encodeproject.org/files/ENCFF510BXY/@@download/ENCFF510BXY.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF208YVO bigWig fold change over control ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF144WYV, ENCFF592HXS, ENCFF858WNV 1043036149 ENCODE Processing Pipeline 93d5b4a48c736c5ace67daf788ee41f8 https://www.encodeproject.org/files/ENCFF208YVO/@@download/ENCFF208YVO.bigWig GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF959SPJ bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF144WYV, ENCFF592HXS, ENCFF858WNV 7309285 ENCODE Processing Pipeline c22309fd856e9f6d8d7a3347c1d5b10c https://www.encodeproject.org/files/ENCFF959SPJ/@@download/ENCFF959SPJ.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF431HRF bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF186BRL 13145479 ENCODE Processing Pipeline 19ce76992740d53dcf4a9b9ea1718119 https://www.encodeproject.org/files/ENCFF431HRF/@@download/ENCFF431HRF.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF186BRL bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF144WYV, ENCFF592HXS 6676249 ENCODE Processing Pipeline c42068b80e0baa987cfe87e9f4840b5e https://www.encodeproject.org/files/ENCFF186BRL/@@download/ENCFF186BRL.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF649GHP bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF144WYV, ENCFF858WNV 7103888 ENCODE Processing Pipeline fd016832e1a57f33673495683ac171bd https://www.encodeproject.org/files/ENCFF649GHP/@@download/ENCFF649GHP.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF261UGQ bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF649GHP 12793782 ENCODE Processing Pipeline 5ec82bce837f3cd85478363ea9b8d51c https://www.encodeproject.org/files/ENCFF261UGQ/@@download/ENCFF261UGQ.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF294RHB bed narrowPeak conservative idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF186BRL, ENCFF419RSJ, ENCFF649GHP, ENCFF959SPJ 202969 ENCODE Processing Pipeline 23e1956ab523ce4e99379dc242a9aa43 https://www.encodeproject.org/files/ENCFF294RHB/@@download/ENCFF294RHB.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF138AJR bigBed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF959SPJ 12955529 ENCODE Processing Pipeline c3809d30fee17d913815dcd3b6ffa1ec https://www.encodeproject.org/files/ENCFF138AJR/@@download/ENCFF138AJR.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF174BGV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF860DHS 978996 ENCODE Processing Pipeline a2570a3aa3edd41454569bff6c1e518f https://www.encodeproject.org/files/ENCFF174BGV/@@download/ENCFF174BGV.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF197HIT bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF294RHB 448325 ENCODE Processing Pipeline bd90fcbf6f914ff03bc5a68151afdcb2 https://www.encodeproject.org/files/ENCFF197HIT/@@download/ENCFF197HIT.bigBed GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF860DHS bed narrowPeak optimal idr thresholded peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF186BRL, ENCFF419RSJ, ENCFF649GHP, ENCFF959SPJ 541662 ENCODE Processing Pipeline ea4769cdbef08b3e9633cea1431a5d93 https://www.encodeproject.org/files/ENCFF860DHS/@@download/ENCFF860DHS.bed.gz GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF751NUI bam unfiltered alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WYW, ENCFF643CGH 3268565757 ENCODE Processing Pipeline 884e56c677ae7361dc5accb133bcb9db https://www.encodeproject.org/files/ENCFF751NUI/@@download/ENCFF751NUI.bam GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF005BXI bam unfiltered alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WYV, ENCFF643CGH 2809473272 ENCODE Processing Pipeline 50bfd62f8980ab9f2d247f8f2e8690d7 https://www.encodeproject.org/files/ENCFF005BXI/@@download/ENCFF005BXI.bam GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF000PAC bam alignments ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PAP 1537162497 Richard Myers, HAIB f28bcf1f0d2965ef30ca91516b738e63 https://www.encodeproject.org/files/ENCFF000PAC/@@download/ENCFF000PAC.bam hg19 released biological replicates with identical biosample ENCFF000PAD bigBed broadPeak peaks ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEA 264275 Richard Myers, HAIB 3fd976f8af8ae1f7b68fc6da618ff20d https://www.encodeproject.org/files/ENCFF000PAD/@@download/ENCFF000PAD.bigBed hg19 released biological replicates with identical biosample ENCFF000PAE bigBed broadPeak peaks ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UEB 310968 Richard Myers, HAIB f0be7526ea3ebff26db31fc3e649a0d1 https://www.encodeproject.org/files/ENCFF000PAE/@@download/ENCFF000PAE.bigBed hg19 released biological replicates with identical biosample ENCFF000PAF bam alignments ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PAQ 1603604244 Richard Myers, HAIB 73a5c1dc702f8f83b12df530529c8434 https://www.encodeproject.org/files/ENCFF000PAF/@@download/ENCFF000PAF.bam hg19 released biological replicates with identical biosample ENCFF000PAG bigWig raw signal ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 243642743 Richard Myers, HAIB 86a5ffa81aa9177b6ba154890a52e086 https://www.encodeproject.org/files/ENCFF000PAG/@@download/ENCFF000PAG.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PAJ bigWig raw signal ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 256980026 Richard Myers, HAIB f62207b8fb74474d5dbba2d079b6ade6 https://www.encodeproject.org/files/ENCFF000PAJ/@@download/ENCFF000PAJ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PAP fastq reads ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1613225057 Richard Myers, HAIB 7a7be287ee136cb16d9599bce2e1f763 https://www.encodeproject.org/files/ENCFF000PAP/@@download/ENCFF000PAP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PAQ fastq reads ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1668720401 Richard Myers, HAIB 10cf3953054a1862058c8258967c0623 https://www.encodeproject.org/files/ENCFF000PAQ/@@download/ENCFF000PAQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEA bed broadPeak peaks ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 127280 Richard Myers, HAIB 9590213a8176b627e605a4f76a97c52a https://www.encodeproject.org/files/ENCFF001UEA/@@download/ENCFF001UEA.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UEB bed broadPeak peaks ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 170892 Richard Myers, HAIB fdaa90fe23ebc63da59f47132adc48f6 https://www.encodeproject.org/files/ENCFF001UEB/@@download/ENCFF001UEB.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000YSW bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YUE 677537623 Michael Snyder, Stanford f0c84cc411041cf3317b9f0486f42ed0 https://www.encodeproject.org/files/ENCFF000YSW/@@download/ENCFF000YSW.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSX bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001VNR 2997131 Michael Snyder, Stanford dbf446d2c9db0a6ddd58ddb5d1978e19 https://www.encodeproject.org/files/ENCFF000YSX/@@download/ENCFF000YSX.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSY bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YUC 645946860 Michael Snyder, Stanford dc72bf9cf4343870afa83d7436264ec9 https://www.encodeproject.org/files/ENCFF000YSY/@@download/ENCFF000YSY.bam hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YTC bigWig signal ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSW, ENCFF000YSY 481939672 Michael Snyder, Stanford e4997b7c6ab93ef591ae3c44621981bb https://www.encodeproject.org/files/ENCFF000YTC/@@download/ENCFF000YTC.bigWig hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUC fastq reads ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1564876842 Michael Snyder, Stanford ee355c15808e1adc4b8564dfba4b8613 https://www.encodeproject.org/files/ENCFF000YUC/@@download/ENCFF000YUC.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YUE fastq reads ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1859400786 Michael Snyder, Stanford 3fabefb50151564ad25736951479be89 https://www.encodeproject.org/files/ENCFF000YUE/@@download/ENCFF000YUE.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VNR bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSW, ENCFF000YSY 1395340 Michael Snyder, Stanford a1c38b95f48a0d8af3b086c6d817893b https://www.encodeproject.org/files/ENCFF001VNR/@@download/ENCFF001VNR.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF002CXC bed narrowPeak optimal idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSW, ENCFF000YSY 490515 ENCODE Consortium Analysis Working Group a22f865a9c3be78243d4c596c899686a https://www.encodeproject.org/files/ENCFF002CXC/@@download/ENCFF002CXC.bed.gz hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF684XPL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF002CXC 1186545 ENCODE Consortium 97cdaf4780f9bced2308d2b9d134cca4 https://www.encodeproject.org/files/ENCFF684XPL/@@download/ENCFF684XPL.bigBed hg19 archived low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF049TZN bam unfiltered alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUE, ENCFF807MUK 2193142464 ENCODE Processing Pipeline ba87565509ef8da0a3f833b65ed41542 https://www.encodeproject.org/files/ENCFF049TZN/@@download/ENCFF049TZN.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF433CEB bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUE, ENCFF807MUK 1400504974 ENCODE Processing Pipeline 5b4bd00d6595c65618b034f0863a5e1c https://www.encodeproject.org/files/ENCFF433CEB/@@download/ENCFF433CEB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF628SDY bam unfiltered alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUC, ENCFF807MUK 1850329881 ENCODE Processing Pipeline b57961eef8d85bf6701a1670fa3ce024 https://www.encodeproject.org/files/ENCFF628SDY/@@download/ENCFF628SDY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF560QPO bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUC, ENCFF807MUK 1210494330 ENCODE Processing Pipeline 1b680f4d5493b1603040b79791df29fe https://www.encodeproject.org/files/ENCFF560QPO/@@download/ENCFF560QPO.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF660EKS bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF433CEB, ENCFF560QPO, ENCFF710NTS 6291523 ENCODE Processing Pipeline 9ec9d8d02dedaae9c7d7129a641d1e45 https://www.encodeproject.org/files/ENCFF660EKS/@@download/ENCFF660EKS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF278TBG bigWig signal p-value ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF433CEB, ENCFF710NTS 543600095 ENCODE Processing Pipeline 47695a0ebb75e4aa989736ee22e659da https://www.encodeproject.org/files/ENCFF278TBG/@@download/ENCFF278TBG.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF239OMI bigWig signal p-value ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF560QPO, ENCFF710NTS 548396570 ENCODE Processing Pipeline d4de42177a6731046fc87c9a69e9006a https://www.encodeproject.org/files/ENCFF239OMI/@@download/ENCFF239OMI.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF554LML bigWig fold change over control ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF560QPO, ENCFF710NTS 530334198 ENCODE Processing Pipeline 179982727abbaf4ad330a3b1d9813c64 https://www.encodeproject.org/files/ENCFF554LML/@@download/ENCFF554LML.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF288PVF bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF887IBL 11391995 ENCODE Processing Pipeline 5b20aa03ad2415d69e04007bd082d7d8 https://www.encodeproject.org/files/ENCFF288PVF/@@download/ENCFF288PVF.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF124UTT bigWig fold change over control ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF433CEB, ENCFF710NTS 561961116 ENCODE Processing Pipeline 5c413b2db58652e2cdeec7a05c17b622 https://www.encodeproject.org/files/ENCFF124UTT/@@download/ENCFF124UTT.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF887IBL bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF560QPO, ENCFF710NTS 5347011 ENCODE Processing Pipeline 073cbf8f91573c530d13ce12e03197d0 https://www.encodeproject.org/files/ENCFF887IBL/@@download/ENCFF887IBL.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF260NPW bigWig signal p-value ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF433CEB, ENCFF560QPO, ENCFF710NTS 537878626 ENCODE Processing Pipeline 6b03a771e269c28086898ab662c202dd https://www.encodeproject.org/files/ENCFF260NPW/@@download/ENCFF260NPW.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF327GIW bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF072BMK 10726870 ENCODE Processing Pipeline 61fba53b1c48d714bb8fe94b7435caa6 https://www.encodeproject.org/files/ENCFF327GIW/@@download/ENCFF327GIW.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF715WON bed narrowPeak conservative idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF072BMK, ENCFF660EKS, ENCFF887IBL 377511 ENCODE Processing Pipeline 0a5826ffba796be6f2b35d9d2e574962 https://www.encodeproject.org/files/ENCFF715WON/@@download/ENCFF715WON.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF437JHE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF715WON 737586 ENCODE Processing Pipeline c5d0055fcb2e7f97e5ad83d778c2c0be https://www.encodeproject.org/files/ENCFF437JHE/@@download/ENCFF437JHE.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF964KPV bigWig fold change over control ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF433CEB, ENCFF560QPO, ENCFF710NTS 884121362 ENCODE Processing Pipeline 6d5c0e7f04464a917dd9fe292b36ed69 https://www.encodeproject.org/files/ENCFF964KPV/@@download/ENCFF964KPV.bigWig hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF072BMK bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF433CEB, ENCFF710NTS 5075327 ENCODE Processing Pipeline baca76bc8dd54ade1118dfe4cbaefb37 https://www.encodeproject.org/files/ENCFF072BMK/@@download/ENCFF072BMK.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF589ITD bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF660EKS 13598089 ENCODE Processing Pipeline e3975cf3e155719d79dad4fd0789c65b https://www.encodeproject.org/files/ENCFF589ITD/@@download/ENCFF589ITD.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF812QPN bed narrowPeak optimal idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF072BMK, ENCFF660EKS, ENCFF887IBL 482148 ENCODE Processing Pipeline 9508b48c5610d3882fe8c0e0e9bbd23e https://www.encodeproject.org/files/ENCFF812QPN/@@download/ENCFF812QPN.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF973XWA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF812QPN 885238 ENCODE Processing Pipeline ecb20279e4b8424937c062df3fb6bfdb https://www.encodeproject.org/files/ENCFF973XWA/@@download/ENCFF973XWA.bigBed hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF914RBV bam unfiltered alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUC, ENCFF643CGH 1857788941 ENCODE Processing Pipeline 55e25986f7648e57d181230030ae452b https://www.encodeproject.org/files/ENCFF914RBV/@@download/ENCFF914RBV.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF762UBK bam unfiltered alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUE, ENCFF643CGH 2203454035 ENCODE Processing Pipeline 3cdbae50d1cd95b0f8cc581509d29f54 https://www.encodeproject.org/files/ENCFF762UBK/@@download/ENCFF762UBK.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF719OIE bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUE, ENCFF643CGH 1399685901 ENCODE Processing Pipeline f654126fbb4401cd532b42df3bbeb2bd https://www.encodeproject.org/files/ENCFF719OIE/@@download/ENCFF719OIE.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF852HSQ bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUC, ENCFF643CGH 1209743708 ENCODE Processing Pipeline 03ade9ed47ecd0c6068d1bcfa437c037 https://www.encodeproject.org/files/ENCFF852HSQ/@@download/ENCFF852HSQ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF556ZFU bigWig signal p-value ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF719OIE 543136492 ENCODE Processing Pipeline 6052c769260512a17839344fc622c5df https://www.encodeproject.org/files/ENCFF556ZFU/@@download/ENCFF556ZFU.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF888NXI bigWig signal p-value ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF852HSQ 547809835 ENCODE Processing Pipeline f10e605f20076beb988e918e4fb5ef3b https://www.encodeproject.org/files/ENCFF888NXI/@@download/ENCFF888NXI.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF961BEV bigWig signal p-value ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF719OIE, ENCFF852HSQ 537414601 ENCODE Processing Pipeline eb5e772ae88ad9c3a18d68a2b8a1b6fe https://www.encodeproject.org/files/ENCFF961BEV/@@download/ENCFF961BEV.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF749NTS bigWig fold change over control ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF719OIE 563065343 ENCODE Processing Pipeline e915536990deac1db84f3457465fc3ee https://www.encodeproject.org/files/ENCFF749NTS/@@download/ENCFF749NTS.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF638LYL bigWig fold change over control ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF852HSQ 530551178 ENCODE Processing Pipeline 230058024323c6edaddde3fcef3d0961 https://www.encodeproject.org/files/ENCFF638LYL/@@download/ENCFF638LYL.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF509GUW bigWig fold change over control ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF719OIE, ENCFF852HSQ 887748762 ENCODE Processing Pipeline 2b7cd365f879a1e7a67e03139514b213 https://www.encodeproject.org/files/ENCFF509GUW/@@download/ENCFF509GUW.bigWig GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF443MTV bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF719OIE 4977725 ENCODE Processing Pipeline a1ebdeb28a843fcc36c0d28e5c631e62 https://www.encodeproject.org/files/ENCFF443MTV/@@download/ENCFF443MTV.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF525DOE bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF852HSQ 5123288 ENCODE Processing Pipeline a97292dbcdbc1fe9ddfbdfea9617ebe2 https://www.encodeproject.org/files/ENCFF525DOE/@@download/ENCFF525DOE.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF485UCS bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF443MTV 10572068 ENCODE Processing Pipeline 2d4a11e1a4fb37eb0f815489e6ef36ae https://www.encodeproject.org/files/ENCFF485UCS/@@download/ENCFF485UCS.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF420ZOS bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF719OIE, ENCFF852HSQ 6102064 ENCODE Processing Pipeline 2a1788a5cadb7b0714d6deb620dceb88 https://www.encodeproject.org/files/ENCFF420ZOS/@@download/ENCFF420ZOS.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF686XQH bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF525DOE 11247837 ENCODE Processing Pipeline 2c68d7217f088e21c4163adfa8667e19 https://www.encodeproject.org/files/ENCFF686XQH/@@download/ENCFF686XQH.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF434LAW bigBed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF420ZOS 13565326 ENCODE Processing Pipeline a961108cede5be399e10f455a7d4bdf6 https://www.encodeproject.org/files/ENCFF434LAW/@@download/ENCFF434LAW.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF216COR bed narrowPeak conservative idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF420ZOS, ENCFF443MTV, ENCFF525DOE 377232 ENCODE Processing Pipeline 144e91de5892cda2efb5abb4a837127d https://www.encodeproject.org/files/ENCFF216COR/@@download/ENCFF216COR.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF675LNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF216COR 739743 ENCODE Processing Pipeline a843f68fc430fffd3122673087351a52 https://www.encodeproject.org/files/ENCFF675LNQ/@@download/ENCFF675LNQ.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF893SCL bed narrowPeak optimal idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF420ZOS, ENCFF443MTV, ENCFF525DOE 477127 ENCODE Processing Pipeline 71d744d2459018e65e97fef53e8a8ded https://www.encodeproject.org/files/ENCFF893SCL/@@download/ENCFF893SCL.bed.gz GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF427JXO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF893SCL 880892 ENCODE Processing Pipeline 8c392e64b449046ae54030cc5d927573 https://www.encodeproject.org/files/ENCFF427JXO/@@download/ENCFF427JXO.bigBed GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF079NVQ fastq reads ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 1 76 single-ended 1594822858 Bradley Bernstein, Broad 18db7c6fe1bf8b672a5d8956a43e7bc0 SRA:SRR5832936 https://www.encodeproject.org/files/ENCFF079NVQ/@@download/ENCFF079NVQ.fastq.gz Illumina HiSeq 2500 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, low read depth, inconsistent control read length, antibody characterized with exemption, mixed read lengths ENCFF794IGW fastq reads ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 1 36 single-ended 1171981507 Bradley Bernstein, Broad 7d6d7de0b0824de05d006149c22ad02b SRA:SRR5832935 https://www.encodeproject.org/files/ENCFF794IGW/@@download/ENCFF794IGW.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF575YOF bam unfiltered alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 36 ENCFF794IGW, ENCFF807MUK 1540128471 ENCODE Processing Pipeline 873a19a71a9a78b49d6a67874f615abb https://www.encodeproject.org/files/ENCFF575YOF/@@download/ENCFF575YOF.bam hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF594NNJ bam unfiltered alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 36 ENCFF643CGH, ENCFF794IGW 1549067475 ENCODE Processing Pipeline 57d3be4065ecf7474f03dd974c1609bb https://www.encodeproject.org/files/ENCFF594NNJ/@@download/ENCFF594NNJ.bam GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF277PVA bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 36 ENCFF643CGH, ENCFF794IGW 929951084 ENCODE Processing Pipeline 32d64cbc202ea2ce0f714c365c45f20d https://www.encodeproject.org/files/ENCFF277PVA/@@download/ENCFF277PVA.bam GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF419LUK bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 36 ENCFF794IGW, ENCFF807MUK 929908483 ENCODE Processing Pipeline 9c07dc0a91437bbfb74bbbf79d803f84 https://www.encodeproject.org/files/ENCFF419LUK/@@download/ENCFF419LUK.bam hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF925ASI bam unfiltered alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 36 ENCFF079NVQ, ENCFF643CGH 1300433478 ENCODE Processing Pipeline 7108fdd38c684ee447b67db40d96a2f9 https://www.encodeproject.org/files/ENCFF925ASI/@@download/ENCFF925ASI.bam GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF031TYH bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 36 ENCFF079NVQ, ENCFF643CGH 914337388 ENCODE Processing Pipeline 71510dbbfe95dd9d67402fb7382ca9d3 https://www.encodeproject.org/files/ENCFF031TYH/@@download/ENCFF031TYH.bam GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF473JJP bam unfiltered alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 36 ENCFF079NVQ, ENCFF807MUK 1292257712 ENCODE Processing Pipeline c544233b653c2be69092539c00043edf https://www.encodeproject.org/files/ENCFF473JJP/@@download/ENCFF473JJP.bam hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF277NVQ bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 36 ENCFF079NVQ, ENCFF807MUK 914640863 ENCODE Processing Pipeline 39fd0480c28a53150e9d2e39022c5454 https://www.encodeproject.org/files/ENCFF277NVQ/@@download/ENCFF277NVQ.bam hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF724ELH bigWig signal p-value ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF243MTV, ENCFF277NVQ, ENCFF727XHW 1966352963 ENCODE Processing Pipeline 271854035fe009ce8b9c287859249242 https://www.encodeproject.org/files/ENCFF724ELH/@@download/ENCFF724ELH.bigWig hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF304PWE bigWig signal p-value ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF243MTV, ENCFF419LUK, ENCFF727XHW 1784328941 ENCODE Processing Pipeline a04d83455916d0917dbb2fcca3ca8360 https://www.encodeproject.org/files/ENCFF304PWE/@@download/ENCFF304PWE.bigWig hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF853NWE bigWig signal p-value ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF243MTV, ENCFF277NVQ, ENCFF419LUK, ENCFF727XHW 2156064923 ENCODE Processing Pipeline 13c42500f109af68d5cada479c391e41 https://www.encodeproject.org/files/ENCFF853NWE/@@download/ENCFF853NWE.bigWig hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF714KPA bigWig fold change over control ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF243MTV, ENCFF277NVQ, ENCFF727XHW 1755371598 ENCODE Processing Pipeline 8f8e0a3a3a139fdb74237054f645324c https://www.encodeproject.org/files/ENCFF714KPA/@@download/ENCFF714KPA.bigWig hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF234RDO bigWig fold change over control ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF243MTV, ENCFF419LUK, ENCFF727XHW 1500756028 ENCODE Processing Pipeline 210c1396c8f1e55be9cbe76e4178bedb https://www.encodeproject.org/files/ENCFF234RDO/@@download/ENCFF234RDO.bigWig hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF885KLR bed narrowPeak optimal idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF029AGK, ENCFF371JLL, ENCFF651ZPC 115171 ENCODE Processing Pipeline f20eefcfc1e4a4ed95f2d2d253a7750b https://www.encodeproject.org/files/ENCFF885KLR/@@download/ENCFF885KLR.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF474ECT bigBed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF651ZPC 13587728 ENCODE Processing Pipeline 0b3fe79aa8bb710aa88a17b4ca97d5d6 https://www.encodeproject.org/files/ENCFF474ECT/@@download/ENCFF474ECT.bigBed hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF371JLL bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF243MTV, ENCFF277NVQ, ENCFF727XHW 6668538 ENCODE Processing Pipeline 1712aedc81671a652253f9eab6e6709f https://www.encodeproject.org/files/ENCFF371JLL/@@download/ENCFF371JLL.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF651ZPC bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF243MTV, ENCFF277NVQ, ENCFF419LUK, ENCFF727XHW 6988370 ENCODE Processing Pipeline a1162a2f5954a1777619c103d772bb98 https://www.encodeproject.org/files/ENCFF651ZPC/@@download/ENCFF651ZPC.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF065KOZ bigBed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF029AGK 13581430 ENCODE Processing Pipeline 114cf4b3bc44fbeef10c82fbdecd299a https://www.encodeproject.org/files/ENCFF065KOZ/@@download/ENCFF065KOZ.bigBed hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF029AGK bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF243MTV, ENCFF419LUK, ENCFF727XHW 6395810 ENCODE Processing Pipeline 98a44503b6814c9924cd9b364c7bf979 https://www.encodeproject.org/files/ENCFF029AGK/@@download/ENCFF029AGK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF937LAQ bigWig fold change over control ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF243MTV, ENCFF277NVQ, ENCFF419LUK, ENCFF727XHW 2087225327 ENCODE Processing Pipeline 893ea424b183f3d4c178c44020f38f28 https://www.encodeproject.org/files/ENCFF937LAQ/@@download/ENCFF937LAQ.bigWig hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF631PWD bigBed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF371JLL 13517138 ENCODE Processing Pipeline 1b10668e463bd5de1757c4b73b83177d https://www.encodeproject.org/files/ENCFF631PWD/@@download/ENCFF631PWD.bigBed hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF585WSG bigBed narrowPeak conservative idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF943ZUK 265629 ENCODE Processing Pipeline 50b572f1691a0ccb69adb55bc5548a02 https://www.encodeproject.org/files/ENCFF585WSG/@@download/ENCFF585WSG.bigBed hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF148WGX bigBed narrowPeak optimal idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF885KLR 281492 ENCODE Processing Pipeline 78b03af21d6100166b843c78141be58a https://www.encodeproject.org/files/ENCFF148WGX/@@download/ENCFF148WGX.bigBed hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF943ZUK bed narrowPeak conservative idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF001TDO, ENCFF029AGK, ENCFF371JLL, ENCFF651ZPC 106907 ENCODE Processing Pipeline 8c2d6099e4a4e9ae44b38d2628421507 https://www.encodeproject.org/files/ENCFF943ZUK/@@download/ENCFF943ZUK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF026ILZ bigWig signal p-value ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF064DDT, ENCFF277PVA, ENCFF504ZFN 1688576393 ENCODE Processing Pipeline 759e526493a1e9aa17de061c69a61907 https://www.encodeproject.org/files/ENCFF026ILZ/@@download/ENCFF026ILZ.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF861JHT bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF031TYH, ENCFF064DDT, ENCFF504ZFN 6661796 ENCODE Processing Pipeline b1b1308ed25f8c2623a9257bd1f7ebdb https://www.encodeproject.org/files/ENCFF861JHT/@@download/ENCFF861JHT.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF735XVF bigBed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF861JHT 13519497 ENCODE Processing Pipeline ebc1ab4bdefe278f60a2cab06ef8b3cb https://www.encodeproject.org/files/ENCFF735XVF/@@download/ENCFF735XVF.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF298EQL bigWig signal p-value ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF031TYH, ENCFF064DDT, ENCFF504ZFN 1898638814 ENCODE Processing Pipeline 48f89ae991827e4d35c164215153ed7f https://www.encodeproject.org/files/ENCFF298EQL/@@download/ENCFF298EQL.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF390YMS bigWig fold change over control ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF031TYH, ENCFF064DDT, ENCFF504ZFN 1755280964 ENCODE Processing Pipeline 3563c31a44c503c41e15be34874e7999 https://www.encodeproject.org/files/ENCFF390YMS/@@download/ENCFF390YMS.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF235EJG bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF031TYH, ENCFF064DDT, ENCFF277PVA, ENCFF504ZFN 6988529 ENCODE Processing Pipeline cc3d33b9c88df1ad94548eb5f93fad5c https://www.encodeproject.org/files/ENCFF235EJG/@@download/ENCFF235EJG.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF278QIG bed narrowPeak conservative idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF235EJG, ENCFF419RSJ, ENCFF821FUD, ENCFF861JHT 106591 ENCODE Processing Pipeline 43af8c63424a0053dde8ef9613578f68 https://www.encodeproject.org/files/ENCFF278QIG/@@download/ENCFF278QIG.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF084FGO bigBed narrowPeak conservative idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF278QIG 266645 ENCODE Processing Pipeline fb29ee31cdb11b73760e41d7cd0a93b8 https://www.encodeproject.org/files/ENCFF084FGO/@@download/ENCFF084FGO.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF779CWH bed narrowPeak optimal idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF235EJG, ENCFF419RSJ, ENCFF821FUD, ENCFF861JHT 112622 ENCODE Processing Pipeline c00d4edc304c9026168b72ef514f3506 https://www.encodeproject.org/files/ENCFF779CWH/@@download/ENCFF779CWH.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF373UYA bigBed narrowPeak optimal idr thresholded peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF779CWH 278952 ENCODE Processing Pipeline 3c5286f3403d519066d7043815051a1d https://www.encodeproject.org/files/ENCFF373UYA/@@download/ENCFF373UYA.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF696JDC bigWig signal p-value ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF031TYH, ENCFF064DDT, ENCFF277PVA, ENCFF504ZFN 1983186278 ENCODE Processing Pipeline 8490516c77cf9dc0d89ea257a9c1bc25 https://www.encodeproject.org/files/ENCFF696JDC/@@download/ENCFF696JDC.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF707FDL bigWig fold change over control ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF064DDT, ENCFF277PVA, ENCFF504ZFN 1501599958 ENCODE Processing Pipeline 21eb1a29880053f2deac79f3c2453f4d https://www.encodeproject.org/files/ENCFF707FDL/@@download/ENCFF707FDL.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF600PQH bigWig fold change over control ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF031TYH, ENCFF064DDT, ENCFF277PVA, ENCFF504ZFN 2087526533 ENCODE Processing Pipeline 2f0ccb33f3301fbca821cb04bbe7f2d1 https://www.encodeproject.org/files/ENCFF600PQH/@@download/ENCFF600PQH.bigWig GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF295UNM bigBed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1, 2 ENCFF235EJG 13591835 ENCODE Processing Pipeline de1a0da84b834e3ee4809135eab1b281 https://www.encodeproject.org/files/ENCFF295UNM/@@download/ENCFF295UNM.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF821FUD bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF064DDT, ENCFF277PVA, ENCFF504ZFN 6382445 ENCODE Processing Pipeline 1b701a919ee4b93649975927fefaecc5 https://www.encodeproject.org/files/ENCFF821FUD/@@download/ENCFF821FUD.bed.gz GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF505SLM bigBed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF821FUD 13576908 ENCODE Processing Pipeline 2d4c5a345cb9c5b162999f226927daa8 https://www.encodeproject.org/files/ENCFF505SLM/@@download/ENCFF505SLM.bigBed GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF000PZJ bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PZV 432779940 Richard Myers, HAIB 4b3bfc98f1cb4281475f256442454c3d https://www.encodeproject.org/files/ENCFF000PZJ/@@download/ENCFF000PZJ.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZL bigBed broadPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJT 569845 Richard Myers, HAIB 5d43928af48252d4edbd32a8347f4e9d https://www.encodeproject.org/files/ENCFF000PZL/@@download/ENCFF000PZL.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZM bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PZY 1076704850 Richard Myers, HAIB 6f0499d31a3f646b08bab254754a8755 https://www.encodeproject.org/files/ENCFF000PZM/@@download/ENCFF000PZM.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZN bigBed broadPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJU 883280 Richard Myers, HAIB f3b9e6ee482a6b5908b2fc92c9ab3f89 https://www.encodeproject.org/files/ENCFF000PZN/@@download/ENCFF000PZN.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZO bigWig raw signal ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 19533657 Richard Myers, HAIB c71ba57618686aa1c314a94dc44a54e4 https://www.encodeproject.org/files/ENCFF000PZO/@@download/ENCFF000PZO.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZQ bigWig raw signal ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 35479114 Richard Myers, HAIB 5e8431eaf9055ce965b83fd4e2f912c0 https://www.encodeproject.org/files/ENCFF000PZQ/@@download/ENCFF000PZQ.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZV fastq reads ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 494929517 Richard Myers, HAIB d09692ac6acf1416cc43e5ef452e0223 https://www.encodeproject.org/files/ENCFF000PZV/@@download/ENCFF000PZV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000PZY fastq reads ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1026344517 Richard Myers, HAIB 937f6244ae245604b7e3098cf3ee6665 https://www.encodeproject.org/files/ENCFF000PZY/@@download/ENCFF000PZY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QET/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF001UJT bed broadPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 346418 Richard Myers, HAIB 38b1460bc8bbad5ee52956d4e78c6aba https://www.encodeproject.org/files/ENCFF001UJT/@@download/ENCFF001UJT.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF001UJU bed broadPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 606633 Richard Myers, HAIB d954c79cc03fe81ab436de905d2a2818 https://www.encodeproject.org/files/ENCFF001UJU/@@download/ENCFF001UJU.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF002CLW bed narrowPeak optimal idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 547340 ENCODE Consortium Analysis Working Group 7f45cf21d10df1bd05cc423854e7a79f https://www.encodeproject.org/files/ENCFF002CLW/@@download/ENCFF002CLW.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF523DQU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLW 1179500 ENCODE Consortium 459542967cf3754f033c4964f792decf https://www.encodeproject.org/files/ENCFF523DQU/@@download/ENCFF523DQU.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF331TRC bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZV, ENCFF643CGH 189715385 ENCODE Processing Pipeline 7a7b384e5a57335211f6b39bd28a8b8b https://www.encodeproject.org/files/ENCFF331TRC/@@download/ENCFF331TRC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF236BRO bam unfiltered alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZV, ENCFF643CGH 563509802 ENCODE Processing Pipeline cb51747847cf9f59f35b28effac2a13e https://www.encodeproject.org/files/ENCFF236BRO/@@download/ENCFF236BRO.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF174XBV bam unfiltered alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZY, ENCFF643CGH 1324290862 ENCODE Processing Pipeline cc5b8b9c0000a55124ffc0cb7afdd731 https://www.encodeproject.org/files/ENCFF174XBV/@@download/ENCFF174XBV.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF535PLW bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZY, ENCFF643CGH 767172471 ENCODE Processing Pipeline 298e40432ceeb43681e43e6c31aa40d2 https://www.encodeproject.org/files/ENCFF535PLW/@@download/ENCFF535PLW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF622LEW bam unfiltered alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZV, ENCFF807MUK 562418712 ENCODE Processing Pipeline bac1ff8780d8d1caf26e34f05621e81e https://www.encodeproject.org/files/ENCFF622LEW/@@download/ENCFF622LEW.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF649QHV bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZV, ENCFF807MUK 189978068 ENCODE Processing Pipeline 3a5e6de3bdedba129a7a9623f3a29aad https://www.encodeproject.org/files/ENCFF649QHV/@@download/ENCFF649QHV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF400SJA bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZY, ENCFF807MUK 767732324 ENCODE Processing Pipeline 62bd020b3f854ed98a5598c63c1f35a2 https://www.encodeproject.org/files/ENCFF400SJA/@@download/ENCFF400SJA.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF591FHN bam unfiltered alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZY, ENCFF807MUK 1321017359 ENCODE Processing Pipeline 2ad101fb274e4591871122e9026abf36 https://www.encodeproject.org/files/ENCFF591FHN/@@download/ENCFF591FHN.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF218HJX bigWig signal p-value ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF331TRC, ENCFF913HVS 287242249 ENCODE Processing Pipeline e2a5801f0fdeaef6d944511cae5d4fff https://www.encodeproject.org/files/ENCFF218HJX/@@download/ENCFF218HJX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF223ZWR bigWig signal p-value ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF535PLW, ENCFF913HVS 439172363 ENCODE Processing Pipeline 30e3fadce087ef8924a2d13200e5e2ae https://www.encodeproject.org/files/ENCFF223ZWR/@@download/ENCFF223ZWR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF401ULN bigWig signal p-value ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331TRC, ENCFF535PLW, ENCFF913HVS 463754730 ENCODE Processing Pipeline cccb5623f964f89b5a57c61a65b076ec https://www.encodeproject.org/files/ENCFF401ULN/@@download/ENCFF401ULN.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF992ARM bigWig fold change over control ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF331TRC, ENCFF913HVS 99818461 ENCODE Processing Pipeline df619c3765cbd87752e83a98df7a6efd https://www.encodeproject.org/files/ENCFF992ARM/@@download/ENCFF992ARM.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF070LSE bigWig fold change over control ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF535PLW, ENCFF913HVS 342033978 ENCODE Processing Pipeline 70809d95e3ae9dd7ee19a37b68a5ddd5 https://www.encodeproject.org/files/ENCFF070LSE/@@download/ENCFF070LSE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF576IQY bigWig fold change over control ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331TRC, ENCFF535PLW, ENCFF913HVS 407166590 ENCODE Processing Pipeline 689734ddfaf772f6ff6fd4f9f96ef98e https://www.encodeproject.org/files/ENCFF576IQY/@@download/ENCFF576IQY.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF914RGQ bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331TRC, ENCFF535PLW, ENCFF913HVS 5484339 ENCODE Processing Pipeline a14031581d0788f2eda7584f5fea43c6 https://www.encodeproject.org/files/ENCFF914RGQ/@@download/ENCFF914RGQ.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF617WYS bed narrowPeak conservative idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF373RYW, ENCFF419RSJ, ENCFF914RGQ, ENCFF940ZYR 276128 ENCODE Processing Pipeline 22af1e45992aaabb040e3d227c4300d0 https://www.encodeproject.org/files/ENCFF617WYS/@@download/ENCFF617WYS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF463GCH bed narrowPeak optimal idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF373RYW, ENCFF419RSJ, ENCFF914RGQ, ENCFF940ZYR 569548 ENCODE Processing Pipeline 425ae520c266a3da61db4b1767c41189 https://www.encodeproject.org/files/ENCFF463GCH/@@download/ENCFF463GCH.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF293DZJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF463GCH 1183034 ENCODE Processing Pipeline f87fe26fe636e497eecaf1e9675b1c5c https://www.encodeproject.org/files/ENCFF293DZJ/@@download/ENCFF293DZJ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF373RYW bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF331TRC, ENCFF913HVS 1718491 ENCODE Processing Pipeline 2ea02304fb23b1579258f43d988f1954 https://www.encodeproject.org/files/ENCFF373RYW/@@download/ENCFF373RYW.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF940ZYR bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF535PLW, ENCFF913HVS 5090410 ENCODE Processing Pipeline af49958ede7ca18fdc1a0dfe0afdcbbc https://www.encodeproject.org/files/ENCFF940ZYR/@@download/ENCFF940ZYR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF610QMV bigBed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF373RYW 3969005 ENCODE Processing Pipeline f7bea53f9bdd0de20d3c6ff84d7ffe07 https://www.encodeproject.org/files/ENCFF610QMV/@@download/ENCFF610QMV.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF263XHO bigBed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF914RGQ 13279552 ENCODE Processing Pipeline f06ef26a5f3fa37e89832b626e365d15 https://www.encodeproject.org/files/ENCFF263XHO/@@download/ENCFF263XHO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF699AIM bigBed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF940ZYR 10893089 ENCODE Processing Pipeline 30b0e7e67a6d2d044b0a67acc2445d70 https://www.encodeproject.org/files/ENCFF699AIM/@@download/ENCFF699AIM.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF419PLT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF617WYS 568647 ENCODE Processing Pipeline 7b18faaa29c73510b2c20861549a630f https://www.encodeproject.org/files/ENCFF419PLT/@@download/ENCFF419PLT.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF445HQE bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF400SJA, ENCFF649QHV, ENCFF701KUD 5484780 ENCODE Processing Pipeline 9d9c8373f8ae66c59eb68f0976483a33 https://www.encodeproject.org/files/ENCFF445HQE/@@download/ENCFF445HQE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF730UGA bigBed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF875HXY 3803312 ENCODE Processing Pipeline 510d6a448c8334b29bf2f5bbc9972cb2 https://www.encodeproject.org/files/ENCFF730UGA/@@download/ENCFF730UGA.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF469QYZ bigWig fold change over control ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF400SJA, ENCFF649QHV, ENCFF701KUD 407858280 ENCODE Processing Pipeline 317ef5dc1971ba33ad5a1f8f71c61b93 https://www.encodeproject.org/files/ENCFF469QYZ/@@download/ENCFF469QYZ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF284PFR bigWig fold change over control ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF649QHV, ENCFF701KUD 101629469 ENCODE Processing Pipeline 12d1a4606916ef85d78bb355b0bc65ef https://www.encodeproject.org/files/ENCFF284PFR/@@download/ENCFF284PFR.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF800OXS bigWig signal p-value ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF400SJA, ENCFF649QHV, ENCFF701KUD 464101180 ENCODE Processing Pipeline ec1f2e1518af7db5b689c523d053f64c https://www.encodeproject.org/files/ENCFF800OXS/@@download/ENCFF800OXS.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF484YEL bigWig fold change over control ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF400SJA, ENCFF701KUD 339155647 ENCODE Processing Pipeline d2f692e4aeaac054854ccf7c86026ac5 https://www.encodeproject.org/files/ENCFF484YEL/@@download/ENCFF484YEL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF102AET bigBed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF634DSI 10888176 ENCODE Processing Pipeline 78e5f9ee752e0d375d3ce6b8c3d6ec77 https://www.encodeproject.org/files/ENCFF102AET/@@download/ENCFF102AET.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF603TCJ bigWig signal p-value ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF649QHV, ENCFF701KUD 293127287 ENCODE Processing Pipeline 1f5745e08b5681303ddcf83b1dd6781f https://www.encodeproject.org/files/ENCFF603TCJ/@@download/ENCFF603TCJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF634DSI bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF400SJA, ENCFF701KUD 5092351 ENCODE Processing Pipeline 312cb573a1d3431bd073463f0d75d458 https://www.encodeproject.org/files/ENCFF634DSI/@@download/ENCFF634DSI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF368HEW bed narrowPeak conservative idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF445HQE, ENCFF634DSI, ENCFF875HXY 275080 ENCODE Processing Pipeline c59322150fab933e3bb751e22e3afb6c https://www.encodeproject.org/files/ENCFF368HEW/@@download/ENCFF368HEW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF564WEB bed narrowPeak optimal idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF445HQE, ENCFF634DSI, ENCFF875HXY 561894 ENCODE Processing Pipeline eacf14da9a574f49fd8a632a87be3b4d https://www.encodeproject.org/files/ENCFF564WEB/@@download/ENCFF564WEB.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF430EMT bigWig signal p-value ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF400SJA, ENCFF701KUD 508643399 ENCODE Processing Pipeline 91ffb3bd841a549e8c56314a3302972c https://www.encodeproject.org/files/ENCFF430EMT/@@download/ENCFF430EMT.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF875HXY bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF649QHV, ENCFF701KUD 1602818 ENCODE Processing Pipeline 81ba7eff0351c58785226e55900ea318 https://www.encodeproject.org/files/ENCFF875HXY/@@download/ENCFF875HXY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF459QOD bigBed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF445HQE 13283173 ENCODE Processing Pipeline a53b84031cd1c306214e4ddb36ab54d2 https://www.encodeproject.org/files/ENCFF459QOD/@@download/ENCFF459QOD.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF894YXD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF564WEB 1174187 ENCODE Processing Pipeline e18916cb7992cb933b0e66b3c831ca31 https://www.encodeproject.org/files/ENCFF894YXD/@@download/ENCFF894YXD.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF746BOB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF368HEW 572681 ENCODE Processing Pipeline 86eec46a84a0fabcb8b153da6bf2a154 https://www.encodeproject.org/files/ENCFF746BOB/@@download/ENCFF746BOB.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000OEN bigBed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TYZ 911870 Richard Myers, HAIB abbafb302bb98f64d5faa5c9e3757a11 https://www.encodeproject.org/files/ENCFF000OEN/@@download/ENCFF000OEN.bigBed hg19 released low read length missing raw data in replicate ENCFF000OEO bam alignments ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEV 869557624 Richard Myers, HAIB c1f6262ecaafe47381bc9b4083ac89ab https://www.encodeproject.org/files/ENCFF000OEO/@@download/ENCFF000OEO.bam hg19 released low read length missing raw data in replicate ENCFF000OES bigWig raw signal ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 23458524 Richard Myers, HAIB 9c83a09aad12e07ca3a5db15bf3dfbed https://www.encodeproject.org/files/ENCFF000OES/@@download/ENCFF000OES.bigWig hg19 released low read length missing derived_from, missing raw data in replicate ENCFF000OEV fastq reads ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 875849247 Richard Myers, HAIB 7f54f981d9432ee1443c19b21118f5ba https://www.encodeproject.org/files/ENCFF000OEV/@@download/ENCFF000OEV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OCU/ released low read length missing raw data in replicate ENCFF001TYZ bed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 472261 Richard Myers, HAIB 53c3b019a9b4e52685cac6906cd6abcb https://www.encodeproject.org/files/ENCFF001TYZ/@@download/ENCFF001TYZ.bed.gz hg19 released low read length missing derived_from, missing raw data in replicate ENCFF000OEL bam alignments ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 567992634 Richard Myers, HAIB 9b64ec2e8eba8adb613d9502da19908b https://www.encodeproject.org/files/ENCFF000OEL/@@download/ENCFF000OEL.bam hg19 released low read length missing derived_from, missing raw data in replicate ENCFF000OEM bigBed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TYY 825942 Richard Myers, HAIB e9cfd6d9e8bdecd29d42c3b73563a61c https://www.encodeproject.org/files/ENCFF000OEM/@@download/ENCFF000OEM.bigBed hg19 released low read length missing raw data in replicate ENCFF000OER bigWig raw signal ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 33945573 Richard Myers, HAIB fff31991d0f126e44d1893f492da3454 https://www.encodeproject.org/files/ENCFF000OER/@@download/ENCFF000OER.bigWig hg19 released low read length missing derived_from, missing raw data in replicate ENCFF001TYY bed broadPeak peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 411807 Richard Myers, HAIB f2b3d462b1153966fd7059967dfb9f59 https://www.encodeproject.org/files/ENCFF001TYY/@@download/ENCFF001TYY.bed.gz hg19 released low read length missing derived_from, missing raw data in replicate ENCFF002CHV bed narrowPeak optimal idr thresholded peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 357355 ENCODE Consortium Analysis Working Group f3352a8a478ebcbe54fda2f2becbd4eb https://www.encodeproject.org/files/ENCFF002CHV/@@download/ENCFF002CHV.bed.gz hg19 released low read length missing derived_from, missing raw data in replicate ENCFF329HXD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHV 807661 ENCODE Consortium 9c1d166820c83b349667e376b519559c https://www.encodeproject.org/files/ENCFF329HXD/@@download/ENCFF329HXD.bigBed hg19 released low read length missing raw data in replicate ENCFF865MQU fastq reads ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 2 ENCFF447NYN 3560096002 Michael Snyder, Stanford 1231e4f328b54dfd5103894dcaf62bf9 SRA:SRR6212679 https://www.encodeproject.org/files/ENCFF865MQU/@@download/ENCFF865MQU.fastq.gz Illumina HiSeq 2000 /files/ENCFF196VWV/ released mild to moderate bottlenecking NTR biosample ENCFF052VWI fastq reads ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 1 ENCFF802MME 3163107093 Michael Snyder, Stanford e9c0421d8421b8f83383ffce09d89558 SRA:SRR6212680 https://www.encodeproject.org/files/ENCFF052VWI/@@download/ENCFF052VWI.fastq.gz Illumina HiSeq 2000 /files/ENCFF938ITQ/ released mild to moderate bottlenecking NTR biosample ENCFF802MME fastq reads ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 1 100 paired-ended 2 ENCFF052VWI 3370509741 Michael Snyder, Stanford 16062ee4b51e6e7216af18f4b381dd61 SRA:SRR6212680 https://www.encodeproject.org/files/ENCFF802MME/@@download/ENCFF802MME.fastq.gz Illumina HiSeq 2000 /files/ENCFF613BNV/ released mild to moderate bottlenecking NTR biosample ENCFF447NYN fastq reads ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 1 100 paired-ended 1 ENCFF865MQU 3343513516 Michael Snyder, Stanford b7d390c33339debcfe2d27dc8c8bf4a7 SRA:SRR6212679 https://www.encodeproject.org/files/ENCFF447NYN/@@download/ENCFF447NYN.fastq.gz Illumina HiSeq 2000 /files/ENCFF938VAO/ released mild to moderate bottlenecking NTR biosample ENCFF188MLA bam unfiltered alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF447NYN, ENCFF807MUK, ENCFF865MQU 7194847669 ENCODE Processing Pipeline 87bac0dc295695b5912d757c5e363ef0 https://www.encodeproject.org/files/ENCFF188MLA/@@download/ENCFF188MLA.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF518OUM bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF447NYN, ENCFF807MUK, ENCFF865MQU 5854009453 ENCODE Processing Pipeline b18ad9c21bb24cc3035621853f48f599 https://www.encodeproject.org/files/ENCFF518OUM/@@download/ENCFF518OUM.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF408EZC bam unfiltered alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF447NYN, ENCFF643CGH, ENCFF865MQU 7201837118 ENCODE Processing Pipeline 66b299bbf85997c56a5fafdeaab70cba https://www.encodeproject.org/files/ENCFF408EZC/@@download/ENCFF408EZC.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF565QSG bam unfiltered alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF052VWI, ENCFF643CGH, ENCFF802MME 6784212227 ENCODE Processing Pipeline 15d503dcf90796fc64ab0d9bd164adae https://www.encodeproject.org/files/ENCFF565QSG/@@download/ENCFF565QSG.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF365CNT bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF447NYN, ENCFF643CGH, ENCFF865MQU 5856329526 ENCODE Processing Pipeline 9104d386478aa291c6b6212465953ac1 https://www.encodeproject.org/files/ENCFF365CNT/@@download/ENCFF365CNT.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF683TLX bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF052VWI, ENCFF643CGH, ENCFF802MME 5352693976 ENCODE Processing Pipeline af8237822d5023b64b52e7ac0705a62e https://www.encodeproject.org/files/ENCFF683TLX/@@download/ENCFF683TLX.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF878EUC bam unfiltered alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF052VWI, ENCFF802MME, ENCFF807MUK 6775169499 ENCODE Processing Pipeline 85f2ef04966567666fd9ce8970c2a569 https://www.encodeproject.org/files/ENCFF878EUC/@@download/ENCFF878EUC.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF393CEV bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF052VWI, ENCFF802MME, ENCFF807MUK 5351520453 ENCODE Processing Pipeline 139a9965d8c4f619e4bd5b1c2bf532d6 https://www.encodeproject.org/files/ENCFF393CEV/@@download/ENCFF393CEV.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF371QNU bigWig signal p-value ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF393CEV, ENCFF938FXZ 1039907646 ENCODE Processing Pipeline 3a90c3c9203d6c219750aed1b40fef37 https://www.encodeproject.org/files/ENCFF371QNU/@@download/ENCFF371QNU.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF600HNC bigWig signal p-value ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF320FQJ, ENCFF518OUM 1574600546 ENCODE Processing Pipeline e398c65ced90e439c1c0bf29160f2929 https://www.encodeproject.org/files/ENCFF600HNC/@@download/ENCFF600HNC.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF032KSH bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF320FQJ, ENCFF518OUM 7028649 ENCODE Processing Pipeline ab4b197141ca1092321e093a44751d65 https://www.encodeproject.org/files/ENCFF032KSH/@@download/ENCFF032KSH.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF558UVA bigBed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF032KSH 13292433 ENCODE Processing Pipeline 462610c518776d80cce615e60dd9bd53 https://www.encodeproject.org/files/ENCFF558UVA/@@download/ENCFF558UVA.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF439SKM bed narrowPeak conservative idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF032KSH, ENCFF255EDE, ENCFF563CXH 1156687 ENCODE Processing Pipeline 0275cbaa6e8f7e2e11bcdd1ad78b78af https://www.encodeproject.org/files/ENCFF439SKM/@@download/ENCFF439SKM.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF018GHD bigBed narrowPeak conservative idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF439SKM 2773546 ENCODE Processing Pipeline 5cdb0c626e4f62a37ff09b24d08773cf https://www.encodeproject.org/files/ENCFF018GHD/@@download/ENCFF018GHD.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF255UWV bigWig fold change over control ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF393CEV, ENCFF938FXZ 1775395359 ENCODE Processing Pipeline 4c1c08b95403a1e407144ce03aaa87f9 https://www.encodeproject.org/files/ENCFF255UWV/@@download/ENCFF255UWV.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF032VRY bigWig signal p-value ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF320FQJ, ENCFF393CEV, ENCFF518OUM, ENCFF938FXZ 1682936322 ENCODE Processing Pipeline ccc870b4495497f7969a383b6cf2d427 https://www.encodeproject.org/files/ENCFF032VRY/@@download/ENCFF032VRY.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF273GKF bigWig fold change over control ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF320FQJ, ENCFF393CEV, ENCFF518OUM, ENCFF938FXZ 4165621066 ENCODE Processing Pipeline 5854b903273290e00e6e16576b74fd94 https://www.encodeproject.org/files/ENCFF273GKF/@@download/ENCFF273GKF.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF255EDE bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF393CEV, ENCFF938FXZ 7008257 ENCODE Processing Pipeline 5b9c43e51c405a24c14ff682f59f7664 https://www.encodeproject.org/files/ENCFF255EDE/@@download/ENCFF255EDE.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF563CXH bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF320FQJ, ENCFF393CEV, ENCFF518OUM, ENCFF938FXZ 7496071 ENCODE Processing Pipeline 78f0dfd206e52aee65058bb5945119be https://www.encodeproject.org/files/ENCFF563CXH/@@download/ENCFF563CXH.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF605LHU bigBed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF255EDE 13276608 ENCODE Processing Pipeline 7f8007172a9e4a76af14654693090593 https://www.encodeproject.org/files/ENCFF605LHU/@@download/ENCFF605LHU.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF317GIK bigWig fold change over control ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF320FQJ, ENCFF518OUM 1967095219 ENCODE Processing Pipeline f0976d44de1cf647a17c5a76d69db6e2 https://www.encodeproject.org/files/ENCFF317GIK/@@download/ENCFF317GIK.bigWig hg19 released mild to moderate bottlenecking NTR biosample ENCFF511NJE bigBed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF563CXH 13315671 ENCODE Processing Pipeline f6f32666f68db3c0ffd34e9ffa34a280 https://www.encodeproject.org/files/ENCFF511NJE/@@download/ENCFF511NJE.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF450CNK bed narrowPeak optimal idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF001TDO, ENCFF032KSH, ENCFF255EDE, ENCFF563CXH 1438655 ENCODE Processing Pipeline 2c3f3e32ca1959fa2952b084fb115bed https://www.encodeproject.org/files/ENCFF450CNK/@@download/ENCFF450CNK.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF313PGB bigBed narrowPeak optimal idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF450CNK 3448736 ENCODE Processing Pipeline a18775004faebec0efe4f06768cdcf37 https://www.encodeproject.org/files/ENCFF313PGB/@@download/ENCFF313PGB.bigBed hg19 released mild to moderate bottlenecking NTR biosample ENCFF727WHR bigWig signal p-value ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF365CNT, ENCFF368HMQ, ENCFF433NFZ, ENCFF683TLX 1480580870 ENCODE Processing Pipeline 80b8a9da74c9a4f285c90660fd369dfa https://www.encodeproject.org/files/ENCFF727WHR/@@download/ENCFF727WHR.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF826DQF bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF365CNT, ENCFF368HMQ 7038661 ENCODE Processing Pipeline f51a8d97823a74aead155fa62d9e205c https://www.encodeproject.org/files/ENCFF826DQF/@@download/ENCFF826DQF.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF753HNR bed narrowPeak optimal idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF817BQI, ENCFF826DQF, ENCFF849YMG 1451583 ENCODE Processing Pipeline 99609b7546ae0958672dd056439bb13a https://www.encodeproject.org/files/ENCFF753HNR/@@download/ENCFF753HNR.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF771PHG bigBed narrowPeak optimal idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF753HNR 3481466 ENCODE Processing Pipeline 49c5fac73c2d4680e12b51bb44beb3a3 https://www.encodeproject.org/files/ENCFF771PHG/@@download/ENCFF771PHG.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF688NTD bigWig fold change over control ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF433NFZ, ENCFF683TLX 1768657037 ENCODE Processing Pipeline eea25982264a982bd7a864648186688e https://www.encodeproject.org/files/ENCFF688NTD/@@download/ENCFF688NTD.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF040MHD bigWig signal p-value ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF365CNT, ENCFF368HMQ 1443048483 ENCODE Processing Pipeline 9eccd82aa86d7fe9f8bad14a6036481c https://www.encodeproject.org/files/ENCFF040MHD/@@download/ENCFF040MHD.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF849YMG bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF433NFZ, ENCFF683TLX 7016592 ENCODE Processing Pipeline e8b4f2fd3f5c66de250865cd39adee4d https://www.encodeproject.org/files/ENCFF849YMG/@@download/ENCFF849YMG.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF817BQI bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF365CNT, ENCFF368HMQ, ENCFF433NFZ, ENCFF683TLX 7504415 ENCODE Processing Pipeline cfb8d99e4baa718e17fcb49b6a5d1caa https://www.encodeproject.org/files/ENCFF817BQI/@@download/ENCFF817BQI.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF898TQQ bigBed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF849YMG 13294613 ENCODE Processing Pipeline 1efc8641629352586e6d271199de458d https://www.encodeproject.org/files/ENCFF898TQQ/@@download/ENCFF898TQQ.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF548AVT bigBed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF817BQI 13325868 ENCODE Processing Pipeline 77260f5b583dfcdb9196e19fc3e5f1b0 https://www.encodeproject.org/files/ENCFF548AVT/@@download/ENCFF548AVT.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF517XKX bigWig signal p-value ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF433NFZ, ENCFF683TLX 1167340718 ENCODE Processing Pipeline a20a519fa6948d50505bc28b882129b6 https://www.encodeproject.org/files/ENCFF517XKX/@@download/ENCFF517XKX.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF852QBZ bigWig fold change over control ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF365CNT, ENCFF368HMQ 1970725756 ENCODE Processing Pipeline 74ddbb5504c24d0b938e0170268f57dd https://www.encodeproject.org/files/ENCFF852QBZ/@@download/ENCFF852QBZ.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF266BGZ bigWig fold change over control ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF365CNT, ENCFF368HMQ, ENCFF433NFZ, ENCFF683TLX 4176033968 ENCODE Processing Pipeline ba94ca3dd995b4818f04a032b404d35c https://www.encodeproject.org/files/ENCFF266BGZ/@@download/ENCFF266BGZ.bigWig GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF146FOH bigBed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF826DQF 13311447 ENCODE Processing Pipeline 27e2bb5d3ef29331abe18ef997b6fc2d https://www.encodeproject.org/files/ENCFF146FOH/@@download/ENCFF146FOH.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF349TOJ bed narrowPeak conservative idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF419RSJ, ENCFF817BQI, ENCFF826DQF, ENCFF849YMG 1160666 ENCODE Processing Pipeline 482759c647a28c23e71d2aa52a60901e https://www.encodeproject.org/files/ENCFF349TOJ/@@download/ENCFF349TOJ.bed.gz GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF493OSR bigBed narrowPeak conservative idr thresholded peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1, 2 ENCFF349TOJ 2782097 ENCODE Processing Pipeline 185a1b701ff2d13cf5ec4dcb03244e50 https://www.encodeproject.org/files/ENCFF493OSR/@@download/ENCFF493OSR.bigBed GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF000VTU bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 486192054 Michael Snyder, Stanford 23b700850bb9e35ff31774e66ef79139 https://www.encodeproject.org/files/ENCFF000VTU/@@download/ENCFF000VTU.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VTV bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VEC 2095827 Michael Snyder, Stanford dbab254fc014d25f300dcecbaa185810 https://www.encodeproject.org/files/ENCFF000VTV/@@download/ENCFF000VTV.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VTW fastq reads ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 934383110 Michael Snyder, Stanford 9cb7d7fb80064d3c547ff6823c03b54d https://www.encodeproject.org/files/ENCFF000VTW/@@download/ENCFF000VTW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VTY fastq reads ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 703565974 Michael Snyder, Stanford 128742840a0a8ca8eee1880151d20611 https://www.encodeproject.org/files/ENCFF000VTY/@@download/ENCFF000VTY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000VUA bigWig signal ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 340335262 Michael Snyder, Stanford 53548b3017bb9834d923950ba906e03f https://www.encodeproject.org/files/ENCFF000VUA/@@download/ENCFF000VUA.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000VUB bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 350386541 Michael Snyder, Stanford f2ab9a0858c2c4cf62109249d6157659 https://www.encodeproject.org/files/ENCFF000VUB/@@download/ENCFF000VUB.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VEC bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 798112 Michael Snyder, Stanford c868a977fd1c2439d38fbe8ef9cc8d79 https://www.encodeproject.org/files/ENCFF001VEC/@@download/ENCFF001VEC.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002COP bed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 37449 ENCODE Consortium Analysis Working Group 38600372fb5e2c126dacf2f7e6c1b58b https://www.encodeproject.org/files/ENCFF002COP/@@download/ENCFF002COP.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF733NSI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COP 165330 ENCODE Consortium 8ca910eb6e3d78cec84d0a159ee6d7ca https://www.encodeproject.org/files/ENCFF733NSI/@@download/ENCFF733NSI.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065YOX bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF643CGH 604975859 ENCODE Processing Pipeline d8b3391b9c63ae3cc407e1111ed059ae https://www.encodeproject.org/files/ENCFF065YOX/@@download/ENCFF065YOX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803YAB bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF643CGH 473315124 ENCODE Processing Pipeline 768189dbe9860c0b431ed3c72654b6c4 https://www.encodeproject.org/files/ENCFF803YAB/@@download/ENCFF803YAB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF347CFP bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF643CGH 731934761 ENCODE Processing Pipeline 4795294f7045d7de2d98b06a97997e69 https://www.encodeproject.org/files/ENCFF347CFP/@@download/ENCFF347CFP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF415AGV bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF643CGH 972397090 ENCODE Processing Pipeline 9af74af7b8c608dfb8e7f5f090ead2f4 https://www.encodeproject.org/files/ENCFF415AGV/@@download/ENCFF415AGV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF934EQK bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF807MUK 729482994 ENCODE Processing Pipeline 29cc0a977f8bb538bf48cda528779ac8 https://www.encodeproject.org/files/ENCFF934EQK/@@download/ENCFF934EQK.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF489JLD bam unfiltered alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF807MUK 968655818 ENCODE Processing Pipeline 8e1aabeed955471ee7a0815843a2a40a https://www.encodeproject.org/files/ENCFF489JLD/@@download/ENCFF489JLD.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF853WZI bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF807MUK 470957768 ENCODE Processing Pipeline 891780b5a6d225370e6115d69f954feb https://www.encodeproject.org/files/ENCFF853WZI/@@download/ENCFF853WZI.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF106HCF bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF807MUK 604408291 ENCODE Processing Pipeline 63a9cc756e4f3fad7a0baa11f1683627 https://www.encodeproject.org/files/ENCFF106HCF/@@download/ENCFF106HCF.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF572VFS bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 171893458 ENCODE Processing Pipeline 8578b5cd7e0dc7041ff667c4aae7d71e https://www.encodeproject.org/files/ENCFF572VFS/@@download/ENCFF572VFS.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF483ELN bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO, ENCFF853WZI 408123562 ENCODE Processing Pipeline 24badcfef1e08af225901f34861bd920 https://www.encodeproject.org/files/ENCFF483ELN/@@download/ENCFF483ELN.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF489ZRF bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 4595594 ENCODE Processing Pipeline bbdc5bffc038217e3744e5405b4d1ceb https://www.encodeproject.org/files/ENCFF489ZRF/@@download/ENCFF489ZRF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF403TFL bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO, ENCFF853WZI 173018074 ENCODE Processing Pipeline e934bb13d79149464a97f62f46b7d537 https://www.encodeproject.org/files/ENCFF403TFL/@@download/ENCFF403TFL.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF358LVY bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 159938550 ENCODE Processing Pipeline fd00bfe28a5b8d6e9691c6b7bd13ab4f https://www.encodeproject.org/files/ENCFF358LVY/@@download/ENCFF358LVY.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF931DOD bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF489ZRF 10367717 ENCODE Processing Pipeline 5bbeaed2ecb6cf54012ec2f80c0ab2fb https://www.encodeproject.org/files/ENCFF931DOD/@@download/ENCFF931DOD.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF876SYJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF356JLK 413732 ENCODE Processing Pipeline 45083334c6c3647b17ad877c771fe4dc https://www.encodeproject.org/files/ENCFF876SYJ/@@download/ENCFF876SYJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF898MUV bed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF118LBD, ENCFF489ZRF, ENCFF906FFH 197171 ENCODE Processing Pipeline 590976200dc7a4de06cc75f4f0991b60 https://www.encodeproject.org/files/ENCFF898MUV/@@download/ENCFF898MUV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF134YTH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF898MUV 450400 ENCODE Processing Pipeline 7a4777755fc571ae1abbd6f50bc3fc92 https://www.encodeproject.org/files/ENCFF134YTH/@@download/ENCFF134YTH.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF684OOJ bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 263664410 ENCODE Processing Pipeline 2ab39eb1853e4bc76656965c32b7abd8 https://www.encodeproject.org/files/ENCFF684OOJ/@@download/ENCFF684OOJ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF558BWJ bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF906FFH 13031251 ENCODE Processing Pipeline 23802c5f1fe84befb8d13ce1e986e293 https://www.encodeproject.org/files/ENCFF558BWJ/@@download/ENCFF558BWJ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF356JLK bed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF118LBD, ENCFF489ZRF, ENCFF906FFH 176619 ENCODE Processing Pipeline a65a5319633a4b4c97b6350bba3930f4 https://www.encodeproject.org/files/ENCFF356JLK/@@download/ENCFF356JLK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF062BTR bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 76738994 ENCODE Processing Pipeline d5aa8ac43dbd100355eed20a5f64a922 https://www.encodeproject.org/files/ENCFF062BTR/@@download/ENCFF062BTR.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF118LBD bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 4139029 ENCODE Processing Pipeline 9763bff5c78d156a3749165a3f71531d https://www.encodeproject.org/files/ENCFF118LBD/@@download/ENCFF118LBD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF906FFH bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO, ENCFF853WZI 5234650 ENCODE Processing Pipeline b3cd9cb22695c440d7e8aefaf7126a0d https://www.encodeproject.org/files/ENCFF906FFH/@@download/ENCFF906FFH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF610MXX bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF118LBD 9584110 ENCODE Processing Pipeline 99ba8420d5e3fae10efd291f63e98aca https://www.encodeproject.org/files/ENCFF610MXX/@@download/ENCFF610MXX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF555YUZ bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS 4600584 ENCODE Processing Pipeline ef1443368246268575ac7da6503bb617 https://www.encodeproject.org/files/ENCFF555YUZ/@@download/ENCFF555YUZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF013JVJ bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF555YUZ 10341188 ENCODE Processing Pipeline 845b1a8a0a508ab442af25e0e534df94 https://www.encodeproject.org/files/ENCFF013JVJ/@@download/ENCFF013JVJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF090TBS bed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF555YUZ, ENCFF786JHB, ENCFF988HCB 181164 ENCODE Processing Pipeline 4c5ed97dbb4f840cdefb5e30e30cdbd4 https://www.encodeproject.org/files/ENCFF090TBS/@@download/ENCFF090TBS.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF445ALN bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS 172645390 ENCODE Processing Pipeline 95807c3774191317858ce42034716d4f https://www.encodeproject.org/files/ENCFF445ALN/@@download/ENCFF445ALN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF020UQA bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS, ENCFF803YAB 156926374 ENCODE Processing Pipeline abd3695f128457766b8be918fda63303 https://www.encodeproject.org/files/ENCFF020UQA/@@download/ENCFF020UQA.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976ZVJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF090TBS 420962 ENCODE Processing Pipeline 0403f9d2a56f080d944c18a2299a8ac1 https://www.encodeproject.org/files/ENCFF976ZVJ/@@download/ENCFF976ZVJ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF208ZPC bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF786JHB 9589908 ENCODE Processing Pipeline 33f1dd9764c78985422cd1342f799b37 https://www.encodeproject.org/files/ENCFF208ZPC/@@download/ENCFF208ZPC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF342AZN bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF803YAB 164132689 ENCODE Processing Pipeline fd04bf863734effc775f5df6630484f9 https://www.encodeproject.org/files/ENCFF342AZN/@@download/ENCFF342AZN.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF988HCB bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS, ENCFF803YAB 5244433 ENCODE Processing Pipeline ce5e285ecb1e3b7639aa5bbd60495724 https://www.encodeproject.org/files/ENCFF988HCB/@@download/ENCFF988HCB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF006RLZ bigBed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF988HCB 13037440 ENCODE Processing Pipeline f526c1d01a12b1b2d691a2550fea4f07 https://www.encodeproject.org/files/ENCFF006RLZ/@@download/ENCFF006RLZ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF470ZMK bed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF419RSJ, ENCFF555YUZ, ENCFF786JHB, ENCFF988HCB 210762 ENCODE Processing Pipeline 8956d48a4fcec991b1594a282ffba056 https://www.encodeproject.org/files/ENCFF470ZMK/@@download/ENCFF470ZMK.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF981JEY bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS 264840654 ENCODE Processing Pipeline 5f13a3f6d76e35337b56c344b931326e https://www.encodeproject.org/files/ENCFF981JEY/@@download/ENCFF981JEY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF480VBH bigWig signal p-value ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF803YAB 77057959 ENCODE Processing Pipeline 69c7b5ecb5f39974a62f11bf119e0f9c https://www.encodeproject.org/files/ENCFF480VBH/@@download/ENCFF480VBH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF118ZGB bigWig fold change over control ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF065YOX, ENCFF477ZKJ, ENCFF710SMS, ENCFF803YAB 413630164 ENCODE Processing Pipeline 9a9a5a60f0c787d241ae101d9cb2b881 https://www.encodeproject.org/files/ENCFF118ZGB/@@download/ENCFF118ZGB.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF786JHB bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF477ZKJ, ENCFF803YAB 4140727 ENCODE Processing Pipeline e1fa7f7054651d1795884b861f596b31 https://www.encodeproject.org/files/ENCFF786JHB/@@download/ENCFF786JHB.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF204CQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF470ZMK 472668 ENCODE Processing Pipeline 91d541c0cd8cdb529c23a4ecbeb37203 https://www.encodeproject.org/files/ENCFF204CQV/@@download/ENCFF204CQV.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000CBN bigBed broadPeak peaks ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE ENCFF001TAA 370678 Bradley Bernstein, Broad aeeea5dfb58dac6663c1340b97a6c382 https://www.encodeproject.org/files/ENCFF000CBN/@@download/ENCFF000CBN.bigBed hg19 released low read length, inconsistent platforms, mixed read lengths ENCFF000CBO bam alignments ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001QXC 1267294707 Bradley Bernstein, Broad bfc4664b64b4577b6e9c3a72b28c6582 https://www.encodeproject.org/files/ENCFF000CBO/@@download/ENCFF000CBO.bam hg19 released low read length, inconsistent platforms, mixed read lengths ENCFF000CBP bigWig signal ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 176671597 Bradley Bernstein, Broad 912777f952f2b15f58c9ea8979f8b1e3 https://www.encodeproject.org/files/ENCFF000CBP/@@download/ENCFF000CBP.bigWig hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF001QXC fastq reads ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1311114267 Bradley Bernstein, Broad 4cfa6e098964b2a94a2cd2c15284cd46 https://www.encodeproject.org/files/ENCFF001QXC/@@download/ENCFF001QXC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BWK/ released low read length, inconsistent platforms, mixed read lengths ENCFF001TAA bed broadPeak peaks ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 225186 Bradley Bernstein, Broad 00475f060154db0d5022ee945cd3054e https://www.encodeproject.org/files/ENCFF001TAA/@@download/ENCFF001TAA.bed.gz hg19 released low read length, inconsistent platforms, mixed read lengths missing derived_from ENCFF809VCA fastq reads ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 2 1 76 single-ended 1653521164 Bradley Bernstein, Broad 114d7cf666d98d7257aeebe47358ba96 https://www.encodeproject.org/files/ENCFF809VCA/@@download/ENCFF809VCA.fastq.gz Illumina HiSeq 2500 released low read length, inconsistent platforms, mixed read lengths missing controlled_by ENCFF688MOZ fastq reads ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 3 1 36 single-ended 273177010 Bradley Bernstein, Broad 845477c4d2dcd794f448ef04cb1820e4 https://www.encodeproject.org/files/ENCFF688MOZ/@@download/ENCFF688MOZ.fastq.gz Illumina HiSeq 2500 released low read length, inconsistent platforms, mixed read lengths missing controlled_by ENCFF000BKL bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000BKY 1076387597 Bradley Bernstein, Broad 44acd8c87ca2625e5778cf9cab2f7802 https://www.encodeproject.org/files/ENCFF000BKL/@@download/ENCFF000BKL.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000BKM bigBed broadPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SXG 1379679 Bradley Bernstein, Broad 9e2cf32f1a135b0855a1d8d09eb81696 https://www.encodeproject.org/files/ENCFF000BKM/@@download/ENCFF000BKM.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000BKN bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000BKZ 1761201108 Bradley Bernstein, Broad 1f893a23c980414eb56c17ecd0aaba61 https://www.encodeproject.org/files/ENCFF000BKN/@@download/ENCFF000BKN.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000BKO bigWig signal ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 539886826 Bradley Bernstein, Broad 70015cead9870a1b43941c5d12b1f8b3 https://www.encodeproject.org/files/ENCFF000BKO/@@download/ENCFF000BKO.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF000BKY fastq reads ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1206094223 Bradley Bernstein, Broad 8f58505cb9b7aec91faac06365ae51bf https://www.encodeproject.org/files/ENCFF000BKY/@@download/ENCFF000BKY.fastq.gz Illumina Genome Analyzer /files/ENCFF000BKI/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000BKZ fastq reads ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1831876661 Bradley Bernstein, Broad 1a15cf79a9c2077b62863320fa6a54ae https://www.encodeproject.org/files/ENCFF000BKZ/@@download/ENCFF000BKZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000BKK/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001SXG bed broadPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 799958 Bradley Bernstein, Broad 5f090a5c3ab1cd5029486dab2e864cfe https://www.encodeproject.org/files/ENCFF001SXG/@@download/ENCFF001SXG.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF002CEE bed narrowPeak optimal idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 42379 ENCODE Consortium Analysis Working Group 9e2473f434eaa01853b1ef380f0b3a3a https://www.encodeproject.org/files/ENCFF002CEE/@@download/ENCFF002CEE.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF605FNH bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEE 180782 ENCODE Consortium 86e3afc4e648191ccd1c1f338cc71fe4 https://www.encodeproject.org/files/ENCFF605FNH/@@download/ENCFF605FNH.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF206RRQ bam unfiltered alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BKY, ENCFF643CGH 1507480831 ENCODE Processing Pipeline ec72ecdb0de0082a9ca6d00b0b79db24 https://www.encodeproject.org/files/ENCFF206RRQ/@@download/ENCFF206RRQ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF671MAH bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BKY, ENCFF643CGH 873636483 ENCODE Processing Pipeline 1d99020e5929fd97538ab6ffc6059373 https://www.encodeproject.org/files/ENCFF671MAH/@@download/ENCFF671MAH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF286BLR bam unfiltered alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BKZ, ENCFF643CGH 2270985298 ENCODE Processing Pipeline 28e90f3a8ff61cb0be2adc79980fc1c0 https://www.encodeproject.org/files/ENCFF286BLR/@@download/ENCFF286BLR.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF965XCZ bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BKZ, ENCFF643CGH 1353217130 ENCODE Processing Pipeline aa857c2e0ab998eab655c2acf978c182 https://www.encodeproject.org/files/ENCFF965XCZ/@@download/ENCFF965XCZ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF087VDN bam unfiltered alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BKY, ENCFF807MUK 1499301250 ENCODE Processing Pipeline 0df6db84070fe2a250926748599ea889 https://www.encodeproject.org/files/ENCFF087VDN/@@download/ENCFF087VDN.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF272WPB bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BKY, ENCFF807MUK 873869200 ENCODE Processing Pipeline 73f28184643db12dc349ab0a1e1bdfe2 https://www.encodeproject.org/files/ENCFF272WPB/@@download/ENCFF272WPB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF941BYQ bam unfiltered alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BKZ, ENCFF807MUK 2256844298 ENCODE Processing Pipeline a7207b46250568533b02ea34d71d00d8 https://www.encodeproject.org/files/ENCFF941BYQ/@@download/ENCFF941BYQ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF543GAK bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BKZ, ENCFF807MUK 1353584863 ENCODE Processing Pipeline b5aa7b276813f48ca6aa5fed8423d477 https://www.encodeproject.org/files/ENCFF543GAK/@@download/ENCFF543GAK.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF901AJE bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF298NLV, ENCFF671MAH, ENCFF791XAM 4119919 ENCODE Processing Pipeline 3624c22682512803c6b6abdfa7d371a4 https://www.encodeproject.org/files/ENCFF901AJE/@@download/ENCFF901AJE.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF202FJZ bigBed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF610BYU 10966037 ENCODE Processing Pipeline 3ba952c8c8316c3df11573fd42589c48 https://www.encodeproject.org/files/ENCFF202FJZ/@@download/ENCFF202FJZ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF629BKP bed narrowPeak conservative idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF120NIX, ENCFF419RSJ, ENCFF610BYU, ENCFF901AJE 39085 ENCODE Processing Pipeline 51aa48e4b8e19473a900432a5f08c4c2 https://www.encodeproject.org/files/ENCFF629BKP/@@download/ENCFF629BKP.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF491ONF bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF629BKP 161292 ENCODE Processing Pipeline 390c5343388924c946c31fd813350528 https://www.encodeproject.org/files/ENCFF491ONF/@@download/ENCFF491ONF.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF065AQF bigWig signal p-value ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF298NLV, ENCFF671MAH, ENCFF791XAM, ENCFF965XCZ 352602946 ENCODE Processing Pipeline 8c5140bf70ed8587ac8edd262a6b5642 https://www.encodeproject.org/files/ENCFF065AQF/@@download/ENCFF065AQF.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF211JBX bigWig fold change over control ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF298NLV, ENCFF671MAH, ENCFF791XAM, ENCFF965XCZ 675830294 ENCODE Processing Pipeline ffb1908afadaa9bf83352bb39f79244e https://www.encodeproject.org/files/ENCFF211JBX/@@download/ENCFF211JBX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF610BYU bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF298NLV, ENCFF791XAM, ENCFF965XCZ 4606838 ENCODE Processing Pipeline 760e8114a1fb1ffd8fe79855271196ff https://www.encodeproject.org/files/ENCFF610BYU/@@download/ENCFF610BYU.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF120NIX bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF298NLV, ENCFF671MAH, ENCFF791XAM, ENCFF965XCZ 5246332 ENCODE Processing Pipeline 80062a9e20d79d16c8608d26ed023da2 https://www.encodeproject.org/files/ENCFF120NIX/@@download/ENCFF120NIX.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF430XZN bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF128OWK 172667 ENCODE Processing Pipeline 8cdbeb76604f5afb942964527200774e https://www.encodeproject.org/files/ENCFF430XZN/@@download/ENCFF430XZN.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF686JIB bigWig signal p-value ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF298NLV, ENCFF671MAH, ENCFF791XAM 362932484 ENCODE Processing Pipeline f8a81479c7a599dba0ccabba57306119 https://www.encodeproject.org/files/ENCFF686JIB/@@download/ENCFF686JIB.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF947MDA bigWig fold change over control ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF298NLV, ENCFF791XAM, ENCFF965XCZ 470908170 ENCODE Processing Pipeline 2c2628bd319459a3173935669ce1f1f0 https://www.encodeproject.org/files/ENCFF947MDA/@@download/ENCFF947MDA.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF359FZE bigWig fold change over control ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF298NLV, ENCFF671MAH, ENCFF791XAM 342276316 ENCODE Processing Pipeline 79d2ce97b7c0c2b4b21ac4623891ae05 https://www.encodeproject.org/files/ENCFF359FZE/@@download/ENCFF359FZE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF035IUO bigBed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF901AJE 10450510 ENCODE Processing Pipeline 6609855a76242665707b0df3872fafe7 https://www.encodeproject.org/files/ENCFF035IUO/@@download/ENCFF035IUO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF020ICY bigBed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF120NIX 11128314 ENCODE Processing Pipeline 5a82ae62ee7ad9b2ad55092ab5fef42e https://www.encodeproject.org/files/ENCFF020ICY/@@download/ENCFF020ICY.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF128OWK bed narrowPeak optimal idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF120NIX, ENCFF419RSJ, ENCFF610BYU, ENCFF901AJE 43883 ENCODE Processing Pipeline 27533945154020427e07a1369bc70360 https://www.encodeproject.org/files/ENCFF128OWK/@@download/ENCFF128OWK.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF372PPK bigWig signal p-value ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF298NLV, ENCFF791XAM, ENCFF965XCZ 348442481 ENCODE Processing Pipeline 8dd8f11831a0603d99e7ad57991e9afd https://www.encodeproject.org/files/ENCFF372PPK/@@download/ENCFF372PPK.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF491NXF bigWig signal p-value ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF003XTF, ENCFF208RCO, ENCFF543GAK 348704326 ENCODE Processing Pipeline 738d3662d64acf4aeceb1821f5472e26 https://www.encodeproject.org/files/ENCFF491NXF/@@download/ENCFF491NXF.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF178WYO bigWig fold change over control ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF003XTF, ENCFF208RCO, ENCFF543GAK 470926206 ENCODE Processing Pipeline b05091bfcc82fcc0fffc150d6ac463cd https://www.encodeproject.org/files/ENCFF178WYO/@@download/ENCFF178WYO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF367KZA bigWig signal p-value ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB 343008129 ENCODE Processing Pipeline f2853f173b3e5bdb22e5b3e21eb6810d https://www.encodeproject.org/files/ENCFF367KZA/@@download/ENCFF367KZA.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF166WQP bigWig signal p-value ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB, ENCFF543GAK 376554336 ENCODE Processing Pipeline 9dda073e9e1eb1bf642da16c0587896b https://www.encodeproject.org/files/ENCFF166WQP/@@download/ENCFF166WQP.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF965BIL bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF003XTF, ENCFF208RCO, ENCFF543GAK 4607297 ENCODE Processing Pipeline 0db6f3a2ecbf24296eff6f7f8c6e67c2 https://www.encodeproject.org/files/ENCFF965BIL/@@download/ENCFF965BIL.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF465SAB bigBed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF801WBW 13284882 ENCODE Processing Pipeline 9ee8373966bf18e35b3fbb2ebdae08c2 https://www.encodeproject.org/files/ENCFF465SAB/@@download/ENCFF465SAB.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF571UXM bigWig fold change over control ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB 333427537 ENCODE Processing Pipeline 41e41b9529da17135a0c4200bbda329c https://www.encodeproject.org/files/ENCFF571UXM/@@download/ENCFF571UXM.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF442AZU bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB 4152781 ENCODE Processing Pipeline 6cbbb57baedf6b1cd681ac2fff80cd08 https://www.encodeproject.org/files/ENCFF442AZU/@@download/ENCFF442AZU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF940QVK bigBed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF442AZU 10426382 ENCODE Processing Pipeline 76a9724c8989dd3751c07b6ad152efa5 https://www.encodeproject.org/files/ENCFF940QVK/@@download/ENCFF940QVK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF465WVW bed narrowPeak conservative idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF442AZU, ENCFF801WBW, ENCFF965BIL 40053 ENCODE Processing Pipeline ca6c180eeee8796fb1decd6500843377 https://www.encodeproject.org/files/ENCFF465WVW/@@download/ENCFF465WVW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF380TJK bed narrowPeak optimal idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF442AZU, ENCFF801WBW, ENCFF965BIL 40740 ENCODE Processing Pipeline fd7bd8fb764b03f70431855e8c0e1d12 https://www.encodeproject.org/files/ENCFF380TJK/@@download/ENCFF380TJK.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF172JBD bigWig fold change over control ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB, ENCFF543GAK 694221014 ENCODE Processing Pipeline a0e3162dc008af8167076a317d819df4 https://www.encodeproject.org/files/ENCFF172JBD/@@download/ENCFF172JBD.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF801WBW bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB, ENCFF543GAK 5255366 ENCODE Processing Pipeline 40abf38c8ad8b0be07b428e1292ef9ef https://www.encodeproject.org/files/ENCFF801WBW/@@download/ENCFF801WBW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF670NCT bigBed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF965BIL 10953053 ENCODE Processing Pipeline 452448c735f309c534aa5d9c6ec82e00 https://www.encodeproject.org/files/ENCFF670NCT/@@download/ENCFF670NCT.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF744RAV bigBed narrowPeak conservative idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF465WVW 163058 ENCODE Processing Pipeline 898ea4649b6b25965d9a06d154b3535a https://www.encodeproject.org/files/ENCFF744RAV/@@download/ENCFF744RAV.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF072INK bigBed narrowPeak optimal idr thresholded peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF380TJK 165516 ENCODE Processing Pipeline 8a61688988af958bdcb70a78ac4599d7 https://www.encodeproject.org/files/ENCFF072INK/@@download/ENCFF072INK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF018RYZ bam unfiltered alignments ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF073GTF, ENCFF554PAM, ENCFF807MUK 6170192406 ENCODE Processing Pipeline ddf0d95fa321a40bae805504ff7f2c16 https://www.encodeproject.org/files/ENCFF018RYZ/@@download/ENCFF018RYZ.bam hg19 released control low read depth, antibody characterized with exemption ENCFF073GTF fastq reads ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 1 ENCFF554PAM 2779096515 Michael Snyder, Stanford af617b3690049a6a284c7a6277d0a2a9 SRA:SRR6212686 https://www.encodeproject.org/files/ENCFF073GTF/@@download/ENCFF073GTF.fastq.gz Illumina HiSeq 2000 /files/ENCFF326ENE/ released control low read depth, antibody characterized with exemption ENCFF554PAM fastq reads ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 1 100 paired-ended 2 ENCFF073GTF 2860274003 Michael Snyder, Stanford 60b96b29921c61db5d33bf618db09c46 SRA:SRR6212686 https://www.encodeproject.org/files/ENCFF554PAM/@@download/ENCFF554PAM.fastq.gz Illumina HiSeq 2000 /files/ENCFF851KCU/ released control low read depth, antibody characterized with exemption ENCFF839TMC bam alignments ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF073GTF, ENCFF554PAM, ENCFF807MUK 4969801652 ENCODE Processing Pipeline 3dbddef3ac5dd9738cc9513e1393d7dc https://www.encodeproject.org/files/ENCFF839TMC/@@download/ENCFF839TMC.bam hg19 released control low read depth, antibody characterized with exemption ENCFF661CPJ bam unfiltered alignments ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF073GTF, ENCFF554PAM, ENCFF643CGH 6179243844 ENCODE Processing Pipeline 0a9249046a83de80faa71a416790f4ae https://www.encodeproject.org/files/ENCFF661CPJ/@@download/ENCFF661CPJ.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF999KUG bam alignments ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF073GTF, ENCFF554PAM, ENCFF643CGH 4980553915 ENCODE Processing Pipeline 7a35793fdf8e6f1bd91135a29d0d0f50 https://www.encodeproject.org/files/ENCFF999KUG/@@download/ENCFF999KUG.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF835HPR bigBed narrowPeak peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF367GGX 11270638 ENCODE Processing Pipeline b47346a64865308df5d82724c19d7b0c https://www.encodeproject.org/files/ENCFF835HPR/@@download/ENCFF835HPR.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF957WEQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF001TDO, ENCFF367GGX 137877 ENCODE Processing Pipeline 786c3916c9fc294ef3b1a357a03577ee https://www.encodeproject.org/files/ENCFF957WEQ/@@download/ENCFF957WEQ.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF758TTQ bigWig signal p-value ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF753TRQ, ENCFF839TMC 909351887 ENCODE Processing Pipeline a2fd26e068905a0790d54e846d0cdceb https://www.encodeproject.org/files/ENCFF758TTQ/@@download/ENCFF758TTQ.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF367GGX bed narrowPeak peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF753TRQ, ENCFF839TMC 5396596 ENCODE Processing Pipeline 68a6646863b0ea0d68ff79e45c889515 https://www.encodeproject.org/files/ENCFF367GGX/@@download/ENCFF367GGX.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF497YEG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF957WEQ 308253 ENCODE Processing Pipeline 82a42c3ec755bd51be072118f686d74c https://www.encodeproject.org/files/ENCFF497YEG/@@download/ENCFF497YEG.bigBed hg19 released control low read depth, antibody characterized with exemption ENCFF758ZVL bigWig fold change over control ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF753TRQ, ENCFF839TMC 1041072694 ENCODE Processing Pipeline bbd6b46c425bf53d07c6fdd92870af1d https://www.encodeproject.org/files/ENCFF758ZVL/@@download/ENCFF758ZVL.bigWig hg19 released control low read depth, antibody characterized with exemption ENCFF449ZCL bigWig signal p-value ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF987UNO, ENCFF999KUG 908370815 ENCODE Processing Pipeline cc21f44d3ec464c5d114efb8aa4bb6fd https://www.encodeproject.org/files/ENCFF449ZCL/@@download/ENCFF449ZCL.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF053EPF bigWig fold change over control ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF987UNO, ENCFF999KUG 1041940391 ENCODE Processing Pipeline 1a6120a816ac543090c0b10795fe6480 https://www.encodeproject.org/files/ENCFF053EPF/@@download/ENCFF053EPF.bigWig GRCh38 released control low read depth, antibody characterized with exemption ENCFF827SHP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF265BAG, ENCFF419RSJ 142263 ENCODE Processing Pipeline bccb9cb9cc374768a88e2fc8e22686b5 https://www.encodeproject.org/files/ENCFF827SHP/@@download/ENCFF827SHP.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF265BAG bed narrowPeak peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF987UNO, ENCFF999KUG 5407336 ENCODE Processing Pipeline 86917ac56446f2e51e6196822594eaa6 https://www.encodeproject.org/files/ENCFF265BAG/@@download/ENCFF265BAG.bed.gz GRCh38 released control low read depth, antibody characterized with exemption ENCFF794BFJ bigBed narrowPeak peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF265BAG 11292038 ENCODE Processing Pipeline 05f549239887774baf9430c7d7880e19 https://www.encodeproject.org/files/ENCFF794BFJ/@@download/ENCFF794BFJ.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF979WAV bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF827SHP 317255 ENCODE Processing Pipeline 549e60ea401bc0b3201f1b7704365619 https://www.encodeproject.org/files/ENCFF979WAV/@@download/ENCFF979WAV.bigBed GRCh38 released control low read depth, antibody characterized with exemption ENCFF000WGY bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VFW 2022637 Michael Snyder, Stanford 0da4c6dfbecc20139fb4d448278629c2 https://www.encodeproject.org/files/ENCFF000WGY/@@download/ENCFF000WGY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WGZ fastq reads ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1035118917 Michael Snyder, Stanford df7105f01da2cca3d5b4e6f1d65bea4b https://www.encodeproject.org/files/ENCFF000WGZ/@@download/ENCFF000WGZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released borderline replicate concordance, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000WHB fastq reads ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1083417620 Michael Snyder, Stanford abb65cbe31cdbadcbce689731446dd67 https://www.encodeproject.org/files/ENCFF000WHB/@@download/ENCFF000WHB.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released borderline replicate concordance, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000WHD bigWig signal ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 405389544 Michael Snyder, Stanford 2b555fd69db81e8b21940eee373ca3de https://www.encodeproject.org/files/ENCFF000WHD/@@download/ENCFF000WHD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WHE bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 1 577499091 Michael Snyder, Stanford 49d8909604390e7a7f9ff96586c4b01a https://www.encodeproject.org/files/ENCFF000WHE/@@download/ENCFF000WHE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000WHF bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 1 558522412 Michael Snyder, Stanford 93cb657f94588370c69cdc4fdf5477a0 https://www.encodeproject.org/files/ENCFF000WHF/@@download/ENCFF000WHF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VFW bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 940707 Michael Snyder, Stanford 49ca7bb79844efd93e8df6ae931feb72 https://www.encodeproject.org/files/ENCFF001VFW/@@download/ENCFF001VFW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF067MJG bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF643CGH 1083943653 ENCODE Processing Pipeline 1087f90ddf6d9cbef5e92e0d579c308d https://www.encodeproject.org/files/ENCFF067MJG/@@download/ENCFF067MJG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF752WMS bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF643CGH 1050000949 ENCODE Processing Pipeline 6e327890f57a8d5ae3731f1170931166 https://www.encodeproject.org/files/ENCFF752WMS/@@download/ENCFF752WMS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF055QMP bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF643CGH 650158600 ENCODE Processing Pipeline ff66586806dd0483b810b46aeebffc91 https://www.encodeproject.org/files/ENCFF055QMP/@@download/ENCFF055QMP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF230KKA bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF643CGH 630534023 ENCODE Processing Pipeline c26f221e59a03016e91563a14a503e3b https://www.encodeproject.org/files/ENCFF230KKA/@@download/ENCFF230KKA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF725PVP bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF807MUK 1080137565 ENCODE Processing Pipeline ee09e75fa775419efdb2f900692074c8 https://www.encodeproject.org/files/ENCFF725PVP/@@download/ENCFF725PVP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF440GGE bam unfiltered alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF807MUK 1046313980 ENCODE Processing Pipeline 5fb24876aba4427e84b87928916a1d58 https://www.encodeproject.org/files/ENCFF440GGE/@@download/ENCFF440GGE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF597SZP bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF807MUK 630010080 ENCODE Processing Pipeline e00333442fa1995a6921b6cc55bd6e1a https://www.encodeproject.org/files/ENCFF597SZP/@@download/ENCFF597SZP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF463YMY bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF807MUK 650088239 ENCODE Processing Pipeline a4766d4bbb9adf84e03c6c23ceafbaea https://www.encodeproject.org/files/ENCFF463YMY/@@download/ENCFF463YMY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF349DDI bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 283543984 ENCODE Processing Pipeline aea6ec62c75c6ed8a21419054adc248c https://www.encodeproject.org/files/ENCFF349DDI/@@download/ENCFF349DDI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF967EHX bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 4220480 ENCODE Processing Pipeline a87b9a89e23b58761891171cd2a7972f https://www.encodeproject.org/files/ENCFF967EHX/@@download/ENCFF967EHX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF824VGN bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO, ENCFF597SZP 4689216 ENCODE Processing Pipeline 3f105e7014be85554c981a136d1b9472 https://www.encodeproject.org/files/ENCFF824VGN/@@download/ENCFF824VGN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF782DOW bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF967EHX 10137400 ENCODE Processing Pipeline 99585b93a75fd5bf3420df3e82e4a77d https://www.encodeproject.org/files/ENCFF782DOW/@@download/ENCFF782DOW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF475FED bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 72860400 ENCODE Processing Pipeline d38a1497b19fbe0c707b6f24b294f213 https://www.encodeproject.org/files/ENCFF475FED/@@download/ENCFF475FED.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF957MTQ bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO, ENCFF597SZP 489873083 ENCODE Processing Pipeline 5c0f6b5730d26651aea21488e1f00f37 https://www.encodeproject.org/files/ENCFF957MTQ/@@download/ENCFF957MTQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF099BRN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF229WZB 397573 ENCODE Processing Pipeline 85c4f09c3f06076555a83cf1baf12bd3 https://www.encodeproject.org/files/ENCFF099BRN/@@download/ENCFF099BRN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF529JYR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF371OGO 485331 ENCODE Processing Pipeline 23bd1b0c64116d0fdc19474df43d7aab https://www.encodeproject.org/files/ENCFF529JYR/@@download/ENCFF529JYR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF745TRP bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 3520183 ENCODE Processing Pipeline 11415e78052308ca558ce5c13a8f6440 https://www.encodeproject.org/files/ENCFF745TRP/@@download/ENCFF745TRP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF229WZB bed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF745TRP, ENCFF824VGN, ENCFF967EHX 194487 ENCODE Processing Pipeline a464c901a224ded5c747b9d68a9387a5 https://www.encodeproject.org/files/ENCFF229WZB/@@download/ENCFF229WZB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF172WNC bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 175244168 ENCODE Processing Pipeline 34493d39b8ecf99fedf839d660de7508 https://www.encodeproject.org/files/ENCFF172WNC/@@download/ENCFF172WNC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF177KFY bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 220231867 ENCODE Processing Pipeline 0388528997246ec96f4e0fecb57045ca https://www.encodeproject.org/files/ENCFF177KFY/@@download/ENCFF177KFY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF989OMR bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO, ENCFF597SZP 166430988 ENCODE Processing Pipeline cf52db59b9389ad71ceaf4e57c0ea70d https://www.encodeproject.org/files/ENCFF989OMR/@@download/ENCFF989OMR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF406CGP bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF745TRP 7442889 ENCODE Processing Pipeline 7ed8a3ad50904f0337defb4f729b81c4 https://www.encodeproject.org/files/ENCFF406CGP/@@download/ENCFF406CGP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF278MAE bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF824VGN 11047203 ENCODE Processing Pipeline 04be2145724e663562dc482553597acc https://www.encodeproject.org/files/ENCFF278MAE/@@download/ENCFF278MAE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF371OGO bed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF745TRP, ENCFF824VGN, ENCFF967EHX 253028 ENCODE Processing Pipeline d302851e104dd8ae0a5b6a49c01de18c https://www.encodeproject.org/files/ENCFF371OGO/@@download/ENCFF371OGO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF988BRZ bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF055QMP, ENCFF477ZKJ, ENCFF710SMS 172531825 ENCODE Processing Pipeline a74aa833bf3e1f0e762e94d13bcad8bf https://www.encodeproject.org/files/ENCFF988BRZ/@@download/ENCFF988BRZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF363DAX bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF055QMP, ENCFF477ZKJ, ENCFF710SMS 281042650 ENCODE Processing Pipeline 64f52d9b03501ace5b88122ef7fd33c7 https://www.encodeproject.org/files/ENCFF363DAX/@@download/ENCFF363DAX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF186SYA bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF230KKA, ENCFF477ZKJ 219590743 ENCODE Processing Pipeline a71fa2aee065aebad8b96aee4874bbcf https://www.encodeproject.org/files/ENCFF186SYA/@@download/ENCFF186SYA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF844WJC bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF055QMP, ENCFF477ZKJ, ENCFF710SMS 4217771 ENCODE Processing Pipeline d2620a0faa93ede533fd932817fab001 https://www.encodeproject.org/files/ENCFF844WJC/@@download/ENCFF844WJC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF198HWX bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF230KKA, ENCFF477ZKJ 3522543 ENCODE Processing Pipeline 3243e9d94dbdf9c639b477aea905f971 https://www.encodeproject.org/files/ENCFF198HWX/@@download/ENCFF198HWX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF246PNH bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF055QMP, ENCFF230KKA, ENCFF477ZKJ, ENCFF710SMS 4694677 ENCODE Processing Pipeline 39cb25d1ea7891b38f47865aa0731533 https://www.encodeproject.org/files/ENCFF246PNH/@@download/ENCFF246PNH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF301WDP bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF844WJC 10139845 ENCODE Processing Pipeline dbf8632e4a554b34df5b1caed3959e5c https://www.encodeproject.org/files/ENCFF301WDP/@@download/ENCFF301WDP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF909FAL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF942MDT 491729 ENCODE Processing Pipeline 2a3968a421fe7b5feb27d7cb4b6df439 https://www.encodeproject.org/files/ENCFF909FAL/@@download/ENCFF909FAL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF300VXO bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF055QMP, ENCFF230KKA, ENCFF477ZKJ, ENCFF710SMS 166478559 ENCODE Processing Pipeline c51d69ef390a166c087d005db9279f6a https://www.encodeproject.org/files/ENCFF300VXO/@@download/ENCFF300VXO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF621SCQ bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF246PNH 11052625 ENCODE Processing Pipeline a6b385e11b62733806c2340567944c19 https://www.encodeproject.org/files/ENCFF621SCQ/@@download/ENCFF621SCQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF324LIJ bed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF198HWX, ENCFF246PNH, ENCFF419RSJ, ENCFF844WJC 197031 ENCODE Processing Pipeline b7d23ef768bd757ca692c86179b91924 https://www.encodeproject.org/files/ENCFF324LIJ/@@download/ENCFF324LIJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF942MDT bed narrowPeak optimal idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF198HWX, ENCFF246PNH, ENCFF419RSJ, ENCFF844WJC 257837 ENCODE Processing Pipeline 0d313660b213facd5683cf5baf9b9190 https://www.encodeproject.org/files/ENCFF942MDT/@@download/ENCFF942MDT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF785JRJ bigWig signal p-value ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF230KKA, ENCFF477ZKJ 72879417 ENCODE Processing Pipeline 84b0d30d7f8fbb79d0dc64464339cb13 https://www.encodeproject.org/files/ENCFF785JRJ/@@download/ENCFF785JRJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF469XZI bigWig fold change over control ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF055QMP, ENCFF230KKA, ENCFF477ZKJ, ENCFF710SMS 490724546 ENCODE Processing Pipeline 0ec8022983299aa8f52a1cfe81e7d76d https://www.encodeproject.org/files/ENCFF469XZI/@@download/ENCFF469XZI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF188SDF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF324LIJ 401560 ENCODE Processing Pipeline 2d57e48b91ce3a31deb244f92efbdafa https://www.encodeproject.org/files/ENCFF188SDF/@@download/ENCFF188SDF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF688QSS bigBed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF198HWX 7446031 ENCODE Processing Pipeline 33a6be1c7ad6c3e06272fcb10cac6896 https://www.encodeproject.org/files/ENCFF688QSS/@@download/ENCFF688QSS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YHZ fastq reads ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 160334002 Sherman Weissman, Yale 780a8f246a9e8a9cf7433e38da4dda3a https://www.encodeproject.org/files/ENCFF000YHZ/@@download/ENCFF000YHZ.fastq.gz Illumina Genome Analyzer released duplicate lane review, biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YIA fastq reads ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 1 27 single-ended 171575840 Sherman Weissman, Yale dd27739cd8f4ac1f1cf8362f82684c1b https://www.encodeproject.org/files/ENCFF000YIA/@@download/ENCFF000YIA.fastq.gz Illumina Genome Analyzer released duplicate lane review, biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YIB fastq reads ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 176086067 Sherman Weissman, Yale 622a5bb15af0ec9f1bc03c69f7eb556f https://www.encodeproject.org/files/ENCFF000YIB/@@download/ENCFF000YIB.fastq.gz Illumina Genome Analyzer released duplicate lane review, biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YIE bigBed narrowPeak peaks ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMH 261377 Sherman Weissman, Yale e092e7c13064224c9140839b4a60325d https://www.encodeproject.org/files/ENCFF000YIE/@@download/ENCFF000YIE.bigBed hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000YIF bigWig signal ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 291325173 Sherman Weissman, Yale 220fe9fb747ea677fde2ccb505fabbe0 https://www.encodeproject.org/files/ENCFF000YIF/@@download/ENCFF000YIF.bigWig hg19 released duplicate lane review, missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YIG bam alignments ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHZ 194498098 Sherman Weissman, Yale 011d7d44c028f404425b00568fa7769f https://www.encodeproject.org/files/ENCFF000YIG/@@download/ENCFF000YIG.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000YIH bam alignments ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YIB 216573649 Sherman Weissman, Yale cf7599a39040c55b933a5e5381693a4a https://www.encodeproject.org/files/ENCFF000YIH/@@download/ENCFF000YIH.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000YII bam alignments ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YIA 216606543 Sherman Weissman, Yale b104cbcedb5c6bcad77e98600467e557 https://www.encodeproject.org/files/ENCFF000YII/@@download/ENCFF000YII.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF001VMH bed narrowPeak peaks ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 103402 Sherman Weissman, Yale b271e724564862010afa14bee0b59a10 https://www.encodeproject.org/files/ENCFF001VMH/@@download/ENCFF001VMH.bed.gz hg19 released duplicate lane review, biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CVW bed narrowPeak optimal idr thresholded peaks ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 153814 ENCODE Consortium Analysis Working Group 6dcfdb373210f92a6f160dc9869db949 https://www.encodeproject.org/files/ENCFF002CVW/@@download/ENCFF002CVW.bed.gz hg19 released duplicate lane review, biological replicates with identical biosample, missing derived_from insufficient read length ENCFF238YBL bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVW 364901 ENCODE Consortium 0cffa77e591948ee50c9a6d4efb61c45 https://www.encodeproject.org/files/ENCFF238YBL/@@download/ENCFF238YBL.bigBed hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000AZR bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 1 ENCFF270OEH 484908958 Bradley Bernstein, Broad 05da2b40aeb39a82ee97cd6c09679f28 https://www.encodeproject.org/files/ENCFF000AZR/@@download/ENCFF000AZR.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF000AZS bigBed broadPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001SVN 1018820 Bradley Bernstein, Broad e1dab5c329edf68c9c2e8d7b300f05f0 https://www.encodeproject.org/files/ENCFF000AZS/@@download/ENCFF000AZS.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF000AZU bigWig signal ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZR 172179659 Bradley Bernstein, Broad 157d29c23c5f8ed6c42c39183d0ed765 https://www.encodeproject.org/files/ENCFF000AZU/@@download/ENCFF000AZU.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF001SVN bed broadPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZR 586904 Bradley Bernstein, Broad de485aed8a1bce81e12b54db5e630f1b https://www.encodeproject.org/files/ENCFF001SVN/@@download/ENCFF001SVN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF622UBZ fastq reads ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 378979032 Bradley Bernstein, Broad af65e687f18481472f8a1a0e4bd5a83c https://www.encodeproject.org/files/ENCFF622UBZ/@@download/ENCFF622UBZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF270OEH fastq reads ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1121038646 Bradley Bernstein, Broad 6e616e177164d9e967497b49b2dc3484 https://www.encodeproject.org/files/ENCFF270OEH/@@download/ENCFF270OEH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF406EED bam unfiltered alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF622UBZ, ENCFF643CGH 548367528 ENCODE Processing Pipeline c84a7ada7ecb2d8ef21da37fd013e7d0 https://www.encodeproject.org/files/ENCFF406EED/@@download/ENCFF406EED.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF990APU bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF622UBZ, ENCFF643CGH 356828772 ENCODE Processing Pipeline b11a3971c7c45b23fccb7992f1ee7ed1 https://www.encodeproject.org/files/ENCFF990APU/@@download/ENCFF990APU.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF226FDA bam unfiltered alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF622UBZ, ENCFF807MUK 545754866 ENCODE Processing Pipeline 12dfc2cfd4388932aeb80dd38878e209 https://www.encodeproject.org/files/ENCFF226FDA/@@download/ENCFF226FDA.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF854STG bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF622UBZ, ENCFF807MUK 356988954 ENCODE Processing Pipeline 8f5069979693a725162d77d3e1f6efdb https://www.encodeproject.org/files/ENCFF854STG/@@download/ENCFF854STG.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF933DMH bam unfiltered alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF270OEH, ENCFF807MUK 1291239325 ENCODE Processing Pipeline 7c3094bdbc669e2ec5cd53ed4fb98e42 https://www.encodeproject.org/files/ENCFF933DMH/@@download/ENCFF933DMH.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF258PMU bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF270OEH, ENCFF807MUK 299884843 ENCODE Processing Pipeline 6f75df45c5a1d8bf9a72e839c5bc56d6 https://www.encodeproject.org/files/ENCFF258PMU/@@download/ENCFF258PMU.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF095ISN bam unfiltered alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF270OEH, ENCFF643CGH 1293877142 ENCODE Processing Pipeline 1bda6a2b237a56023641fcf4b5fdbd33 https://www.encodeproject.org/files/ENCFF095ISN/@@download/ENCFF095ISN.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF154NVP bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF270OEH, ENCFF643CGH 299715560 ENCODE Processing Pipeline 10dbf068d4a23a113605510570f4e2ee https://www.encodeproject.org/files/ENCFF154NVP/@@download/ENCFF154NVP.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF590PPS bigWig signal p-value ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW 1665689750 ENCODE Processing Pipeline 541b9c4e2dde794974cd176a0001294f https://www.encodeproject.org/files/ENCFF590PPS/@@download/ENCFF590PPS.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF457EVK bigWig signal p-value ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF154NVP, ENCFF504ZFN 1665346555 ENCODE Processing Pipeline 6598dda8321c944ca2c922a99410dba2 https://www.encodeproject.org/files/ENCFF457EVK/@@download/ENCFF457EVK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF449ELD bigWig fold change over control ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW 607570392 ENCODE Processing Pipeline 392d5c2360369897a4be6743a2c1f708 https://www.encodeproject.org/files/ENCFF449ELD/@@download/ENCFF449ELD.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF240MHG bigWig fold change over control ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF154NVP, ENCFF504ZFN 606297753 ENCODE Processing Pipeline 39524744270dbf6491985e1b1074da66 https://www.encodeproject.org/files/ENCFF240MHG/@@download/ENCFF240MHG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF020CIE bigWig signal p-value ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF854STG 1696605106 ENCODE Processing Pipeline 4bcd29fe913b769f23aa4e37b7c84671 https://www.encodeproject.org/files/ENCFF020CIE/@@download/ENCFF020CIE.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF069WQD bigWig signal p-value ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF990APU 1566079159 ENCODE Processing Pipeline f4ba6bc04006dd41544408645cb83098 https://www.encodeproject.org/files/ENCFF069WQD/@@download/ENCFF069WQD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF282VXT bigWig signal p-value ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW, ENCFF854STG 1703072050 ENCODE Processing Pipeline fa6ee293ef52a132202c7e24a13f2212 https://www.encodeproject.org/files/ENCFF282VXT/@@download/ENCFF282VXT.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF026NDV bigWig signal p-value ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF154NVP, ENCFF504ZFN, ENCFF990APU 1794187104 ENCODE Processing Pipeline a06e388e1696361b3db4104cc5f0a014 https://www.encodeproject.org/files/ENCFF026NDV/@@download/ENCFF026NDV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF894DRN bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF154NVP, ENCFF504ZFN, ENCFF990APU 6289952 ENCODE Processing Pipeline 3b3b8709b44d58c6dfdaee44c135a150 https://www.encodeproject.org/files/ENCFF894DRN/@@download/ENCFF894DRN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF806GBQ bed narrowPeak conservative idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF263LKO, ENCFF419RSJ, ENCFF688ANO, ENCFF894DRN 11728 ENCODE Processing Pipeline 01f5729add91638dbfd1d4581c42046c https://www.encodeproject.org/files/ENCFF806GBQ/@@download/ENCFF806GBQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF472SIB bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF806GBQ 75892 ENCODE Processing Pipeline d93563adbff6810425f14c7cf69a0c4a https://www.encodeproject.org/files/ENCFF472SIB/@@download/ENCFF472SIB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF459CAJ bigWig fold change over control ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF990APU 753774424 ENCODE Processing Pipeline 74055705213daf7ec71aa302a8b04447 https://www.encodeproject.org/files/ENCFF459CAJ/@@download/ENCFF459CAJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF422IOT bigWig fold change over control ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF854STG 752869917 ENCODE Processing Pipeline d0cd1382f14f66f163b0c1a2ca9c7cb9 https://www.encodeproject.org/files/ENCFF422IOT/@@download/ENCFF422IOT.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF263LKO bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF990APU 3075229 ENCODE Processing Pipeline f64082332016d6f35c579094370fbcc8 https://www.encodeproject.org/files/ENCFF263LKO/@@download/ENCFF263LKO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF160XEU bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW 4406367 ENCODE Processing Pipeline cc4c74b1342f250ceb26ec69840861fd https://www.encodeproject.org/files/ENCFF160XEU/@@download/ENCFF160XEU.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF421ZHK bigBed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF350FQQ 13376681 ENCODE Processing Pipeline 534c9a9ba17ff0216b1cc6ad95c4fe3e https://www.encodeproject.org/files/ENCFF421ZHK/@@download/ENCFF421ZHK.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF852UCN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF564SSR 66762 ENCODE Processing Pipeline 239b8f14a3d79ae903364cd168f5ca09 https://www.encodeproject.org/files/ENCFF852UCN/@@download/ENCFF852UCN.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF779YFX bigWig fold change over control ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF154NVP, ENCFF504ZFN, ENCFF990APU 1176091133 ENCODE Processing Pipeline 0c726155bc2f8cbd19e4434776052115 https://www.encodeproject.org/files/ENCFF779YFX/@@download/ENCFF779YFX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF688ANO bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF154NVP, ENCFF504ZFN 4221871 ENCODE Processing Pipeline 31d9196ec554be92c8b734d79b38fa88 https://www.encodeproject.org/files/ENCFF688ANO/@@download/ENCFF688ANO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF035MJE bigBed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF688ANO 8206268 ENCODE Processing Pipeline 6a4139335a8b351354e875dcf2b132a7 https://www.encodeproject.org/files/ENCFF035MJE/@@download/ENCFF035MJE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF193TFR bed narrowPeak optimal idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF263LKO, ENCFF419RSJ, ENCFF688ANO, ENCFF894DRN 160361 ENCODE Processing Pipeline 5c428d1abecb23e07637338356033dde https://www.encodeproject.org/files/ENCFF193TFR/@@download/ENCFF193TFR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF201MLE bigBed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF199EXY 7587778 ENCODE Processing Pipeline 83e3289a559637828a12863611926671 https://www.encodeproject.org/files/ENCFF201MLE/@@download/ENCFF201MLE.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF758VWH bigBed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF894DRN 13356254 ENCODE Processing Pipeline 4f79b1ba73ff27eb65d0c0d4e60aa7da https://www.encodeproject.org/files/ENCFF758VWH/@@download/ENCFF758VWH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF564SSR bed narrowPeak conservative idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF160XEU, ENCFF199EXY, ENCFF350FQQ 13416 ENCODE Processing Pipeline f7969a0aaac32052adf5f1121442498e https://www.encodeproject.org/files/ENCFF564SSR/@@download/ENCFF564SSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF192NPA bigWig fold change over control ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW, ENCFF854STG 1237974813 ENCODE Processing Pipeline f8ecc79105e3e44dbd80f9a2c8c9885c https://www.encodeproject.org/files/ENCFF192NPA/@@download/ENCFF192NPA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF241AND bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF361QZZ 340895 ENCODE Processing Pipeline 8c04e57a20b0c7fed0ea75a15d035270 https://www.encodeproject.org/files/ENCFF241AND/@@download/ENCFF241AND.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF334WYO bigBed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF263LKO 7140318 ENCODE Processing Pipeline 8a54b7d2f7e92ee548f066f21c4fe93c https://www.encodeproject.org/files/ENCFF334WYO/@@download/ENCFF334WYO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF199EXY bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF854STG 3366093 ENCODE Processing Pipeline 168107b7246bbc33154ab14ac1c40b73 https://www.encodeproject.org/files/ENCFF199EXY/@@download/ENCFF199EXY.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF350FQQ bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW, ENCFF854STG 6349972 ENCODE Processing Pipeline d934147fa7ba7d09f28a7273c00735d9 https://www.encodeproject.org/files/ENCFF350FQQ/@@download/ENCFF350FQQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF179IGD bigBed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF160XEU 10077853 ENCODE Processing Pipeline 590824ec8143eea3283448ee6aa5a617 https://www.encodeproject.org/files/ENCFF179IGD/@@download/ENCFF179IGD.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF713BDU bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF193TFR 331059 ENCODE Processing Pipeline 63bd9cd006b15169e0562b00701462c7 https://www.encodeproject.org/files/ENCFF713BDU/@@download/ENCFF713BDU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF361QZZ bed narrowPeak optimal idr thresholded peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF160XEU, ENCFF199EXY, ENCFF350FQQ 167198 ENCODE Processing Pipeline 1b89bc58e2171e5e0f4fc7a38b9319d7 https://www.encodeproject.org/files/ENCFF361QZZ/@@download/ENCFF361QZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF000YXW bam alignments ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YYL 465852176 Sherman Weissman, Yale 94c1159522885c017235571890cc342c https://www.encodeproject.org/files/ENCFF000YXW/@@download/ENCFF000YXW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXX bam alignments ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YYR 450889301 Sherman Weissman, Yale 7f5c811793a97f48564b77337c815993 https://www.encodeproject.org/files/ENCFF000YXX/@@download/ENCFF000YXX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXY bigBed narrowPeak peaks ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VOM 571256 Sherman Weissman, Yale 8a3531e6ff2fc0f6b00ab32566cc89a5 https://www.encodeproject.org/files/ENCFF000YXY/@@download/ENCFF000YXY.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXZ bigWig signal ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 318543029 Sherman Weissman, Yale 1b4ca781ee370e3c899ba9ea38e0fdb8 https://www.encodeproject.org/files/ENCFF000YXZ/@@download/ENCFF000YXZ.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YYL fastq reads ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 378214326 Sherman Weissman, Yale 486fce091f2146881d670c5c19f27a8b https://www.encodeproject.org/files/ENCFF000YYL/@@download/ENCFF000YYL.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YYR fastq reads ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 366377744 Sherman Weissman, Yale 3517a7473224b6548a0d0e8fbb30b0ef https://www.encodeproject.org/files/ENCFF000YYR/@@download/ENCFF000YYR.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VOM bed narrowPeak peaks ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 264510 Sherman Weissman, Yale 31e26aa8be8f75f6f0ebfbc12e2a904f https://www.encodeproject.org/files/ENCFF001VOM/@@download/ENCFF001VOM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CXU bed narrowPeak optimal idr thresholded peaks ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 367853 ENCODE Consortium Analysis Working Group 37b2c03ce75692dc617fa321d3f65c51 https://www.encodeproject.org/files/ENCFF002CXU/@@download/ENCFF002CXU.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF051EOV bigBed narrowPeak optimal idr thresholded peaks ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CXU 715973 ENCODE Consortium 17acbd33689750b9086d7dc6506d79c4 https://www.encodeproject.org/files/ENCFF051EOV/@@download/ENCFF051EOV.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000QIN bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QIU 653692019 Richard Myers, HAIB 0daf6ada5ad5e7c68aad7baa1d9ffa3b https://www.encodeproject.org/files/ENCFF000QIN/@@download/ENCFF000QIN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIO bigBed broadPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001ULS 152234 Richard Myers, HAIB 9ef58e0870c2400b33c042c3db3691e6 https://www.encodeproject.org/files/ENCFF000QIO/@@download/ENCFF000QIO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIP bigBed broadPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULU 171113 Richard Myers, HAIB c8ce200fbdfdd25f005dead28a7be7c6 https://www.encodeproject.org/files/ENCFF000QIP/@@download/ENCFF000QIP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIQ bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QIY 787131496 Richard Myers, HAIB 7ee60fd2b8f1f7477749e36532ecd239 https://www.encodeproject.org/files/ENCFF000QIQ/@@download/ENCFF000QIQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIR bigWig raw signal ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 5740273 Richard Myers, HAIB 4c7e9588bc4363d402513ba269997929 https://www.encodeproject.org/files/ENCFF000QIR/@@download/ENCFF000QIR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QIT bigWig raw signal ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 11615742 Richard Myers, HAIB ea73ba57e49e883b02a2d3a628feaeb9 https://www.encodeproject.org/files/ENCFF000QIT/@@download/ENCFF000QIT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QIU fastq reads ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 630257150 Richard Myers, HAIB 7b932c43caf2c8923058d2c6952e4875 https://www.encodeproject.org/files/ENCFF000QIU/@@download/ENCFF000QIU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIY fastq reads ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 763979674 Richard Myers, HAIB 157ca169f856e37b56aabbcb61b8c960 https://www.encodeproject.org/files/ENCFF000QIY/@@download/ENCFF000QIY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001ULS bed broadPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 66359 Richard Myers, HAIB 507c6f9dcb6ee1c3db45c9de3ee24fe4 https://www.encodeproject.org/files/ENCFF001ULS/@@download/ENCFF001ULS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001ULU bed broadPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 1 67685 Richard Myers, HAIB a00ddf10b1437f02ac05bfd15d847a67 https://www.encodeproject.org/files/ENCFF001ULU/@@download/ENCFF001ULU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF002CMU bed narrowPeak optimal idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 71409 ENCODE Consortium Analysis Working Group 7cfa19d276cd276596c0eca1da30d958 https://www.encodeproject.org/files/ENCFF002CMU/@@download/ENCFF002CMU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF147CFM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMU 205121 ENCODE Consortium e1a701a68bbb99855c37aa6c98a88614 https://www.encodeproject.org/files/ENCFF147CFM/@@download/ENCFF147CFM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF926VYO bam unfiltered alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QIU, ENCFF643CGH 835939088 ENCODE Processing Pipeline 2604a4b2435e3f145dd652056b886363 https://www.encodeproject.org/files/ENCFF926VYO/@@download/ENCFF926VYO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF393ZAK bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QIU, ENCFF643CGH 406772395 ENCODE Processing Pipeline 3afbfb2ad696557f226e46cd94cbd0db https://www.encodeproject.org/files/ENCFF393ZAK/@@download/ENCFF393ZAK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF158OEK bam unfiltered alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIY, ENCFF643CGH 962747233 ENCODE Processing Pipeline 5e13b2fbc530c0f0e45ab11d7e0ea43e https://www.encodeproject.org/files/ENCFF158OEK/@@download/ENCFF158OEK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF680COV bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIY, ENCFF643CGH 415460988 ENCODE Processing Pipeline 4d66132fa95cf021a9b565ddfda18500 https://www.encodeproject.org/files/ENCFF680COV/@@download/ENCFF680COV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF799GRV bam unfiltered alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QIU, ENCFF807MUK 835040713 ENCODE Processing Pipeline 6d76e21a16bfe97a251fee332dec1173 https://www.encodeproject.org/files/ENCFF799GRV/@@download/ENCFF799GRV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF132LHA bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QIU, ENCFF807MUK 407089372 ENCODE Processing Pipeline 1a0406a7db438f101e1012ad4bd69815 https://www.encodeproject.org/files/ENCFF132LHA/@@download/ENCFF132LHA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF670GGQ bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIY, ENCFF807MUK 415811046 ENCODE Processing Pipeline 528466f7af58f8195203a0ed53c841a2 https://www.encodeproject.org/files/ENCFF670GGQ/@@download/ENCFF670GGQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF346GCX bam unfiltered alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIY, ENCFF807MUK 959984578 ENCODE Processing Pipeline e2e7cede9bb7f5c69cb6dba41c4399b3 https://www.encodeproject.org/files/ENCFF346GCX/@@download/ENCFF346GCX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF741CWQ bigWig signal p-value ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF393ZAK, ENCFF772PJM 206747064 ENCODE Processing Pipeline 325d273d6d16af732e5929e462ba4dd0 https://www.encodeproject.org/files/ENCFF741CWQ/@@download/ENCFF741CWQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF294WXY bigWig fold change over control ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF393ZAK, ENCFF772PJM 166850950 ENCODE Processing Pipeline 7fbc65546df871c3a9c79358e07c8686 https://www.encodeproject.org/files/ENCFF294WXY/@@download/ENCFF294WXY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF455SIF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF144DMD 222013 ENCODE Processing Pipeline 5e101e87acfa02901f4a65050bfa6384 https://www.encodeproject.org/files/ENCFF455SIF/@@download/ENCFF455SIF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF861VUI bigWig fold change over control ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF680COV, ENCFF772PJM 161349045 ENCODE Processing Pipeline b52725bfa343892a61c5c52dff23dd08 https://www.encodeproject.org/files/ENCFF861VUI/@@download/ENCFF861VUI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF862ATB bigWig fold change over control ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393ZAK, ENCFF680COV, ENCFF772PJM 301069886 ENCODE Processing Pipeline 52ed201c354f63eb4dfaa857ca3ff626 https://www.encodeproject.org/files/ENCFF862ATB/@@download/ENCFF862ATB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF734MTF bigBed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF950RJP 7626994 ENCODE Processing Pipeline f2114d1c99adf28916940046d3a5d1dc https://www.encodeproject.org/files/ENCFF734MTF/@@download/ENCFF734MTF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF971ZIJ bigWig signal p-value ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393ZAK, ENCFF680COV, ENCFF772PJM 198780751 ENCODE Processing Pipeline dcd07d2a4a7f3b86662bfa96bec97b05 https://www.encodeproject.org/files/ENCFF971ZIJ/@@download/ENCFF971ZIJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF950RJP bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF680COV, ENCFF772PJM 3809186 ENCODE Processing Pipeline 9b71261baab03d5c895ccffc7fea547b https://www.encodeproject.org/files/ENCFF950RJP/@@download/ENCFF950RJP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF130TPD bed narrowPeak optimal idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF061TOQ, ENCFF419RSJ, ENCFF510COO, ENCFF950RJP 106296 ENCODE Processing Pipeline b41833219a82f27ff1db888e32c31b17 https://www.encodeproject.org/files/ENCFF130TPD/@@download/ENCFF130TPD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF510COO bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF393ZAK, ENCFF772PJM 4285892 ENCODE Processing Pipeline 079c679cbd2ec6d3b42623ad499f49a0 https://www.encodeproject.org/files/ENCFF510COO/@@download/ENCFF510COO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF061TOQ bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF393ZAK, ENCFF680COV, ENCFF772PJM 4777215 ENCODE Processing Pipeline bcfd6b78c9afa0aacc5f4588ede61829 https://www.encodeproject.org/files/ENCFF061TOQ/@@download/ENCFF061TOQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF691RKN bigBed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF061TOQ 10364549 ENCODE Processing Pipeline f484bb3b8595d7973483fa804b202651 https://www.encodeproject.org/files/ENCFF691RKN/@@download/ENCFF691RKN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF144DMD bed narrowPeak conservative idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF061TOQ, ENCFF419RSJ, ENCFF510COO, ENCFF950RJP 84767 ENCODE Processing Pipeline f8a3a674d78f788bd85453d0e28e5e90 https://www.encodeproject.org/files/ENCFF144DMD/@@download/ENCFF144DMD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF629JMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF130TPD 255455 ENCODE Processing Pipeline 3507b8e99888fc4d927a1c04a145a954 https://www.encodeproject.org/files/ENCFF629JMT/@@download/ENCFF629JMT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF520LJR bigWig signal p-value ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF680COV, ENCFF772PJM 200168191 ENCODE Processing Pipeline 590ec5da92220ca5e7c9ff17c94bdf9e https://www.encodeproject.org/files/ENCFF520LJR/@@download/ENCFF520LJR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF502MUI bigBed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF510COO 9795643 ENCODE Processing Pipeline 6e5ea488d40e41a4170f6d779ff48691 https://www.encodeproject.org/files/ENCFF502MUI/@@download/ENCFF502MUI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF844BFL bigWig signal p-value ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF132LHA, ENCFF750MIM 206800835 ENCODE Processing Pipeline 2c13b44b3f1368d350b806ba2cf6c24e https://www.encodeproject.org/files/ENCFF844BFL/@@download/ENCFF844BFL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF029VIE bigWig signal p-value ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670GGQ, ENCFF750MIM 200333852 ENCODE Processing Pipeline bbad63db86077b5aedb1ca64948d0572 https://www.encodeproject.org/files/ENCFF029VIE/@@download/ENCFF029VIE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF702VIT bigWig signal p-value ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132LHA, ENCFF670GGQ, ENCFF750MIM 198911902 ENCODE Processing Pipeline 0b7adfc8ad2e47356d9b4fd2a8f17e4b https://www.encodeproject.org/files/ENCFF702VIT/@@download/ENCFF702VIT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF893HMM bigWig fold change over control ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF132LHA, ENCFF750MIM 167093396 ENCODE Processing Pipeline 537146eb06bad38ab0970bed115de47d https://www.encodeproject.org/files/ENCFF893HMM/@@download/ENCFF893HMM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF226ZYP bigWig fold change over control ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670GGQ, ENCFF750MIM 159932957 ENCODE Processing Pipeline 58ba632863a3c9a402a58b2da60957ce https://www.encodeproject.org/files/ENCFF226ZYP/@@download/ENCFF226ZYP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF508HQW bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF132LHA, ENCFF750MIM 4290623 ENCODE Processing Pipeline 1aa4372b810d58821068a34162f0722a https://www.encodeproject.org/files/ENCFF508HQW/@@download/ENCFF508HQW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF495GTU bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132LHA, ENCFF670GGQ, ENCFF750MIM 4784128 ENCODE Processing Pipeline 29c836e67caa341c667c48106cf1c9f6 https://www.encodeproject.org/files/ENCFF495GTU/@@download/ENCFF495GTU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF658UQJ bigBed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF495GTU 10365870 ENCODE Processing Pipeline bd7f825817e5b43ad37174fe405fff77 https://www.encodeproject.org/files/ENCFF658UQJ/@@download/ENCFF658UQJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF386XZK bigBed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF508HQW 9793916 ENCODE Processing Pipeline 7f2bad8a85cc2045ae06805119c245b1 https://www.encodeproject.org/files/ENCFF386XZK/@@download/ENCFF386XZK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF993AHY bigWig fold change over control ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132LHA, ENCFF670GGQ, ENCFF750MIM 300198349 ENCODE Processing Pipeline d7bfd0ed218a917e455025bb9a99e106 https://www.encodeproject.org/files/ENCFF993AHY/@@download/ENCFF993AHY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF331SRY bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670GGQ, ENCFF750MIM 3812396 ENCODE Processing Pipeline f3876383ef270f662acdd18de7596855 https://www.encodeproject.org/files/ENCFF331SRY/@@download/ENCFF331SRY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF580FKJ bigBed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF331SRY 7630623 ENCODE Processing Pipeline 4026e0503da83535254d4e557aae6896 https://www.encodeproject.org/files/ENCFF580FKJ/@@download/ENCFF580FKJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF641LJY bed narrowPeak optimal idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF331SRY, ENCFF495GTU, ENCFF508HQW 110805 ENCODE Processing Pipeline 76675a78c7d8cf4618002d20c7af192b https://www.encodeproject.org/files/ENCFF641LJY/@@download/ENCFF641LJY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF596AVD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF641LJY 260776 ENCODE Processing Pipeline b2b0574a79ff1bbdc20de77af250d021 https://www.encodeproject.org/files/ENCFF596AVD/@@download/ENCFF596AVD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF981YOM bed narrowPeak conservative idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF331SRY, ENCFF495GTU, ENCFF508HQW 85839 ENCODE Processing Pipeline 3292b974c2e8feb2794e0109805da9b8 https://www.encodeproject.org/files/ENCFF981YOM/@@download/ENCFF981YOM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF901TDN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF981YOM 223104 ENCODE Processing Pipeline c55de2c2e05eb61e52af3490f82bf8b5 https://www.encodeproject.org/files/ENCFF901TDN/@@download/ENCFF901TDN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000RME bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RMM 1292714836 Vishwanath Iyer, UTA b9b9a57bea8c1a5e1ab05b3411c7d23e https://www.encodeproject.org/files/ENCFF000RME/@@download/ENCFF000RME.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RMF bigWig base overlap signal ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1368682516 Vishwanath Iyer, UTA 15cc6cfc57117ebc2caab65230ce4433 https://www.encodeproject.org/files/ENCFF000RMF/@@download/ENCFF000RMF.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF000RMG bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RMO 1090134829 Vishwanath Iyer, UTA ca0b631be1d04e6cdde0f2e4e1920199 https://www.encodeproject.org/files/ENCFF000RMG/@@download/ENCFF000RMG.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RMH bigBed narrowPeak peaks ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001USA 1836312 Vishwanath Iyer, UTA 4ae06587db87a1904ffa2876b943f37a https://www.encodeproject.org/files/ENCFF000RMH/@@download/ENCFF000RMH.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RMJ bigWig signal ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2899536182 Vishwanath Iyer, UTA 4655edee6a696106fe056124c1899e05 https://www.encodeproject.org/files/ENCFF000RMJ/@@download/ENCFF000RMJ.bigWig hg19 released low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000RMM fastq reads ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 1301650486 Vishwanath Iyer, UTA df96e7f012a0d38b9e26508e9c9a3bd9 https://www.encodeproject.org/files/ENCFF000RMM/@@download/ENCFF000RMM.fastq.gz Illumina Genome Analyzer /files/ENCFF000RMI/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RMO fastq reads ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1096780607 Vishwanath Iyer, UTA 2e059073c17a18017f1d60df3a780e29 https://www.encodeproject.org/files/ENCFF000RMO/@@download/ENCFF000RMO.fastq.gz Illumina Genome Analyzer /files/ENCFF000RMI/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001USA bed narrowPeak peaks ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 1165348 Vishwanath Iyer, UTA edf11360e951aea8bcb51a66682293a3 https://www.encodeproject.org/files/ENCFF001USA/@@download/ENCFF001USA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF002DAE bed narrowPeak optimal idr thresholded peaks ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 362419 ENCODE Consortium Analysis Working Group 9cb690330aa44a71ed0e54db45920aba https://www.encodeproject.org/files/ENCFF002DAE/@@download/ENCFF002DAE.bed.gz hg19 released low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF821MWU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DAE 932014 ENCODE Consortium 6004346d6f5426fb5e23992819b49449 https://www.encodeproject.org/files/ENCFF821MWU/@@download/ENCFF821MWU.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF994HLD bam unfiltered alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMM, ENCFF807MUK 1752238771 ENCODE Processing Pipeline b4607b085047807cf4f56d4a04054a7f https://www.encodeproject.org/files/ENCFF994HLD/@@download/ENCFF994HLD.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF711LZX bam unfiltered alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMO, ENCFF807MUK 1469987275 ENCODE Processing Pipeline 703e460b6e9ad07b10a2b6d6684baa0e https://www.encodeproject.org/files/ENCFF711LZX/@@download/ENCFF711LZX.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF984VJJ bam unfiltered alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMM, ENCFF643CGH 1755082254 ENCODE Processing Pipeline 9dac8511529e73c970d0fa6144a3ee6c https://www.encodeproject.org/files/ENCFF984VJJ/@@download/ENCFF984VJJ.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF697JDL bam unfiltered alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMO, ENCFF643CGH 1472418944 ENCODE Processing Pipeline f4200c026ea7a4ae72f3b03eb33b54e2 https://www.encodeproject.org/files/ENCFF697JDL/@@download/ENCFF697JDL.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF223EHQ bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMM, ENCFF643CGH 992657495 ENCODE Processing Pipeline 6e108b37e56622e9aea2be599b5d3933 https://www.encodeproject.org/files/ENCFF223EHQ/@@download/ENCFF223EHQ.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF453VMB bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMO, ENCFF807MUK 821705699 ENCODE Processing Pipeline 6056aa746760dc9057c608c517d630c2 https://www.encodeproject.org/files/ENCFF453VMB/@@download/ENCFF453VMB.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF555WWS bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMM, ENCFF807MUK 992852317 ENCODE Processing Pipeline 5fbd286ffbacf2f85968ca873bf2a615 https://www.encodeproject.org/files/ENCFF555WWS/@@download/ENCFF555WWS.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF565TWZ bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMO, ENCFF643CGH 821544564 ENCODE Processing Pipeline e6ccb1644900e7b90cc24959b30979b8 https://www.encodeproject.org/files/ENCFF565TWZ/@@download/ENCFF565TWZ.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000XVQ fastq reads ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 246695892 Michael Snyder, Stanford 31c6d133b80a6cbbff2e4c403b4e80ae https://www.encodeproject.org/files/ENCFF000XVQ/@@download/ENCFF000XVQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF000XVU bigBed narrowPeak peaks ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKR 17310 Michael Snyder, Stanford a85de738e8bd93e8b2caa19c6f40d02d https://www.encodeproject.org/files/ENCFF000XVU/@@download/ENCFF000XVU.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XVV bigWig signal ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 346248151 Michael Snyder, Stanford aeddd922f9c4ae4bd44ef607042ce7a8 https://www.encodeproject.org/files/ENCFF000XVV/@@download/ENCFF000XVV.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XVW bam alignments ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XWG 193855657 Michael Snyder, Stanford f7bea87ee046e807eab9416efc94cb40 https://www.encodeproject.org/files/ENCFF000XVW/@@download/ENCFF000XVW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XVX bam alignments ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XVQ 328062335 Michael Snyder, Stanford 469c2a9f54856d92688add3d6fe6db18 https://www.encodeproject.org/files/ENCFF000XVX/@@download/ENCFF000XVX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWG fastq reads ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 149230203 Michael Snyder, Stanford ab001895e58f73b59e0b0219ae130ef5 https://www.encodeproject.org/files/ENCFF000XWG/@@download/ENCFF000XWG.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF001VKR bed narrowPeak peaks ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 1537 Michael Snyder, Stanford 01da60498ea99aceb0fe8af7973910c7 https://www.encodeproject.org/files/ENCFF001VKR/@@download/ENCFF001VKR.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CUO bed narrowPeak optimal idr thresholded peaks ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 35844 ENCODE Consortium Analysis Working Group d876cfc8888d86713d69e26352a7ba2b https://www.encodeproject.org/files/ENCFF002CUO/@@download/ENCFF002CUO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF167GTM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUO 175121 ENCODE Consortium 1cdd7a6ab549b9913b614da3e4d8d3e4 https://www.encodeproject.org/files/ENCFF167GTM/@@download/ENCFF167GTM.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF818QPF fastq reads ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF278HOZ 1380999018 Richard Myers, HAIB fb63f3e6430a6bb69680e41de9ff043d SRA:SRR6213270 https://www.encodeproject.org/files/ENCFF818QPF/@@download/ENCFF818QPF.fastq.gz Illumina HiSeq 2000 /files/ENCFF887QUQ/ released antibody characterized with exemption missing control alignments ENCFF278HOZ fastq reads ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF818QPF 1354943268 Richard Myers, HAIB c6751ecc57f0a31aabfb8ef40c4ee695 SRA:SRR6213270 https://www.encodeproject.org/files/ENCFF278HOZ/@@download/ENCFF278HOZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF720TXT/ released antibody characterized with exemption missing control alignments ENCFF376LHS bam unfiltered alignments ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF278HOZ, ENCFF807MUK, ENCFF818QPF 3274988247 ENCODE Processing Pipeline 2e86e91f0f6423ff2b888020ea9c2508 https://www.encodeproject.org/files/ENCFF376LHS/@@download/ENCFF376LHS.bam hg19 released antibody characterized with exemption missing control alignments ENCFF108NWA bam alignments ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF278HOZ, ENCFF807MUK, ENCFF818QPF 2485298893 ENCODE Processing Pipeline 9712d8972e3b5c7acdd668b04c927ff1 https://www.encodeproject.org/files/ENCFF108NWA/@@download/ENCFF108NWA.bam hg19 released antibody characterized with exemption missing control alignments ENCFF605PCA bam unfiltered alignments ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF278HOZ, ENCFF643CGH, ENCFF818QPF 3288370849 ENCODE Processing Pipeline 61fb874b98dbdc6e239eeb3a2a60c852 https://www.encodeproject.org/files/ENCFF605PCA/@@download/ENCFF605PCA.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF874WSE bam alignments ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF278HOZ, ENCFF643CGH, ENCFF818QPF 2487006065 ENCODE Processing Pipeline 34f6e24c00d39662ff53481a873a2a0c https://www.encodeproject.org/files/ENCFF874WSE/@@download/ENCFF874WSE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF780PVG bigWig fold change over control ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF874WSE 852005985 ENCODE Processing Pipeline 6ef95ae4c2fd2b6ccdc9088e3c09ee40 https://www.encodeproject.org/files/ENCFF780PVG/@@download/ENCFF780PVG.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF348MWL bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF524EST 62187 ENCODE Processing Pipeline f55cf9f6548c0465beda58439c908af0 https://www.encodeproject.org/files/ENCFF348MWL/@@download/ENCFF348MWL.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF542NYO bigWig signal p-value ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF874WSE 837045986 ENCODE Processing Pipeline 89e5720ba8a52cc2fa3ed3ae731b8f02 https://www.encodeproject.org/files/ENCFF542NYO/@@download/ENCFF542NYO.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF222TNQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF348MWL 163226 ENCODE Processing Pipeline a4831d037eb3f6cda488d8475510d3ec https://www.encodeproject.org/files/ENCFF222TNQ/@@download/ENCFF222TNQ.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF524EST bed narrowPeak peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF874WSE 4670468 ENCODE Processing Pipeline 6f867eebe1a891e0f8fa5c7a007b1fae https://www.encodeproject.org/files/ENCFF524EST/@@download/ENCFF524EST.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF549MFC bigBed narrowPeak peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF524EST 11724066 ENCODE Processing Pipeline c9f8a84e22bf88c70543801247e00dec https://www.encodeproject.org/files/ENCFF549MFC/@@download/ENCFF549MFC.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF195OMO bigWig signal p-value ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF108NWA 859956654 ENCODE Processing Pipeline 4406be2a5a3379293da768177f3901be https://www.encodeproject.org/files/ENCFF195OMO/@@download/ENCFF195OMO.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF450JUD bigWig fold change over control ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF108NWA 852776271 ENCODE Processing Pipeline 0912fb8a4fb0323f4ad8c769cf3c5c13 https://www.encodeproject.org/files/ENCFF450JUD/@@download/ENCFF450JUD.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF860SHD bed narrowPeak peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF108NWA 4668753 ENCODE Processing Pipeline dbb1280f1b1472f7675aa6b8c62d2b1f https://www.encodeproject.org/files/ENCFF860SHD/@@download/ENCFF860SHD.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF996CCJ bigBed narrowPeak peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF860SHD 11700251 ENCODE Processing Pipeline 3e1d5d057e3f7c62ca1dd16c62fd2615 https://www.encodeproject.org/files/ENCFF996CCJ/@@download/ENCFF996CCJ.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF700HZX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF860SHD 63741 ENCODE Processing Pipeline f8d9017d9c917f21efca673f339bed7b https://www.encodeproject.org/files/ENCFF700HZX/@@download/ENCFF700HZX.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF160ZTR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF700HZX 164050 ENCODE Processing Pipeline 103cec7dff0d9d1a8bf8054203cdeaaa https://www.encodeproject.org/files/ENCFF160ZTR/@@download/ENCFF160ZTR.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF550BKX fastq reads ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF635PVD 2237007366 Michael Snyder, Stanford ed04ef75c46d06f31a0579d098a1cbfe SRA:SRR6214217 https://www.encodeproject.org/files/ENCFF550BKX/@@download/ENCFF550BKX.fastq.gz Illumina HiSeq 4000 /files/ENCFF047UFK/ released antibody characterized with exemption ENCFF635PVD fastq reads ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF550BKX 2550267751 Michael Snyder, Stanford d2b012e374ff08846fef94bb12b48140 SRA:SRR6214217 https://www.encodeproject.org/files/ENCFF635PVD/@@download/ENCFF635PVD.fastq.gz Illumina HiSeq 4000 /files/ENCFF792LBY/ released antibody characterized with exemption ENCFF168OHY bam unfiltered alignments ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF550BKX, ENCFF635PVD, ENCFF643CGH 4818642138 ENCODE Processing Pipeline 9d3e45f4429a94f30d9f770cbca28093 https://www.encodeproject.org/files/ENCFF168OHY/@@download/ENCFF168OHY.bam GRCh38 released antibody characterized with exemption ENCFF636NJQ bam unfiltered alignments ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF550BKX, ENCFF635PVD, ENCFF807MUK 4807870454 ENCODE Processing Pipeline e152d4fbe8d2f424e7b45650cacbad46 https://www.encodeproject.org/files/ENCFF636NJQ/@@download/ENCFF636NJQ.bam hg19 released antibody characterized with exemption ENCFF170EHY bam alignments ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF550BKX, ENCFF635PVD, ENCFF643CGH 3951902612 ENCODE Processing Pipeline 7e8fd641f2f7eec5b66e9511cb360a7f https://www.encodeproject.org/files/ENCFF170EHY/@@download/ENCFF170EHY.bam GRCh38 released antibody characterized with exemption ENCFF262AKB bam alignments ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF550BKX, ENCFF635PVD, ENCFF807MUK 3946784302 ENCODE Processing Pipeline 443573e8fd0e32e55bd24a466f3560b5 https://www.encodeproject.org/files/ENCFF262AKB/@@download/ENCFF262AKB.bam hg19 released antibody characterized with exemption ENCFF898ZCZ bigWig signal p-value ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF262AKB, ENCFF751PAR 1263759193 ENCODE Processing Pipeline 41a6e522c14d119abd75b1e081fa2585 https://www.encodeproject.org/files/ENCFF898ZCZ/@@download/ENCFF898ZCZ.bigWig hg19 released antibody characterized with exemption ENCFF917VOF bigWig fold change over control ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF262AKB, ENCFF751PAR 1235396013 ENCODE Processing Pipeline 7d23e94ed8d610851e8523a29e8542aa https://www.encodeproject.org/files/ENCFF917VOF/@@download/ENCFF917VOF.bigWig hg19 released antibody characterized with exemption ENCFF104VHX bed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF262AKB, ENCFF751PAR 6703589 ENCODE Processing Pipeline 39a6843c915a672793f7e5e5bb96a704 https://www.encodeproject.org/files/ENCFF104VHX/@@download/ENCFF104VHX.bed.gz hg19 released antibody characterized with exemption ENCFF261ZON bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF781EZZ 870228 ENCODE Processing Pipeline f7f56b32bde2cafdedfbfc70b93f3b94 https://www.encodeproject.org/files/ENCFF261ZON/@@download/ENCFF261ZON.bigBed hg19 released antibody characterized with exemption ENCFF450QXT bigBed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF104VHX 13626257 ENCODE Processing Pipeline 43ccf26e9c4f0a13332fba7f58826f13 https://www.encodeproject.org/files/ENCFF450QXT/@@download/ENCFF450QXT.bigBed hg19 released antibody characterized with exemption ENCFF781EZZ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF104VHX 500178 ENCODE Processing Pipeline 44409b3a2e915e325f4725ef8190ca9b https://www.encodeproject.org/files/ENCFF781EZZ/@@download/ENCFF781EZZ.bed.gz hg19 released antibody characterized with exemption ENCFF851LZB bigWig signal p-value ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF170EHY, ENCFF519AHQ 1266622163 ENCODE Processing Pipeline 2e14fd1151b0f6e8a436668a9f252b92 https://www.encodeproject.org/files/ENCFF851LZB/@@download/ENCFF851LZB.bigWig GRCh38 released antibody characterized with exemption ENCFF343RNG bed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF170EHY, ENCFF519AHQ 6688566 ENCODE Processing Pipeline a75f8d5dc261292b1ce154a40a8caa6a https://www.encodeproject.org/files/ENCFF343RNG/@@download/ENCFF343RNG.bed.gz GRCh38 released antibody characterized with exemption ENCFF887XCY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF254NYT 871256 ENCODE Processing Pipeline 54c9f226c5447a27ed5c638c4d2c51e9 https://www.encodeproject.org/files/ENCFF887XCY/@@download/ENCFF887XCY.bigBed GRCh38 released antibody characterized with exemption ENCFF645MYR bigWig fold change over control ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF170EHY, ENCFF519AHQ 1235957498 ENCODE Processing Pipeline c495312b4857da45240f7094e71d3e44 https://www.encodeproject.org/files/ENCFF645MYR/@@download/ENCFF645MYR.bigWig GRCh38 released antibody characterized with exemption ENCFF266BVR bigBed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF343RNG 13622770 ENCODE Processing Pipeline 45db30801d6d4758758f717e073900a0 https://www.encodeproject.org/files/ENCFF266BVR/@@download/ENCFF266BVR.bigBed GRCh38 released antibody characterized with exemption ENCFF254NYT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF343RNG, ENCFF419RSJ 499702 ENCODE Processing Pipeline 873c61ac0676e9c0d350939f78364973 https://www.encodeproject.org/files/ENCFF254NYT/@@download/ENCFF254NYT.bed.gz GRCh38 released antibody characterized with exemption ENCFF000RQG bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RQN 626808542 Vishwanath Iyer, UTA 1ce9efbc1af4635b7156421cfcd9f516 https://www.encodeproject.org/files/ENCFF000RQG/@@download/ENCFF000RQG.bam hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RQH bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RQS 1220259142 Vishwanath Iyer, UTA 9be0746f9ab268ffe720a4de9c12b8d8 https://www.encodeproject.org/files/ENCFF000RQH/@@download/ENCFF000RQH.bam hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RQI bigWig base overlap signal ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1153459226 Vishwanath Iyer, UTA 916bf456e0eee8096fb9a099f007fd79 https://www.encodeproject.org/files/ENCFF000RQI/@@download/ENCFF000RQI.bigWig hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF000RQJ bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001USM 1853569 Vishwanath Iyer, UTA 2dc0bc4d7c2a53abdabcff4d29abe593 https://www.encodeproject.org/files/ENCFF000RQJ/@@download/ENCFF000RQJ.bigBed hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RQL bigWig signal ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 4271839031 Vishwanath Iyer, UTA 1b016a41351fcaf03ca3d0a7d979a58e https://www.encodeproject.org/files/ENCFF000RQL/@@download/ENCFF000RQL.bigWig hg19 archived control low read depth, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RQN fastq reads ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 696304165 Vishwanath Iyer, UTA a869507063ac422368a9b9469b03d8bd https://www.encodeproject.org/files/ENCFF000RQN/@@download/ENCFF000RQN.fastq.gz Illumina Genome Analyzer /files/ENCFF000RRV/ released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RQS fastq reads ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 1259003574 Vishwanath Iyer, UTA 86701dc150916d05d771ebed8c6cc109 https://www.encodeproject.org/files/ENCFF000RQS/@@download/ENCFF000RQS.fastq.gz Illumina Genome Analyzer /files/ENCFF000RRV/ released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001USM bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1123946 Vishwanath Iyer, UTA 6a2827fa697268cc04fce7b8ecc31f4d https://www.encodeproject.org/files/ENCFF001USM/@@download/ENCFF001USM.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF801NXU bam unfiltered alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQS, ENCFF643CGH 1427692565 ENCODE Processing Pipeline 89259029396f568d2c571920cb79eda7 https://www.encodeproject.org/files/ENCFF801NXU/@@download/ENCFF801NXU.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF816TEP bam unfiltered alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQN, ENCFF643CGH 787937405 ENCODE Processing Pipeline 3af1de056c1a20da2b77e04fa4a2c293 https://www.encodeproject.org/files/ENCFF816TEP/@@download/ENCFF816TEP.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF068ETE bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQN, ENCFF643CGH 465466126 ENCODE Processing Pipeline f3b47a510098f6330353abedce070d25 https://www.encodeproject.org/files/ENCFF068ETE/@@download/ENCFF068ETE.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF418UZJ bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQS, ENCFF643CGH 893846680 ENCODE Processing Pipeline 705ba7844067b038920c61b69d1ea9a7 https://www.encodeproject.org/files/ENCFF418UZJ/@@download/ENCFF418UZJ.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF890SZE bam unfiltered alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQS, ENCFF807MUK 1424518316 ENCODE Processing Pipeline 4fe375f94939430c79fc6ba8f83c220e https://www.encodeproject.org/files/ENCFF890SZE/@@download/ENCFF890SZE.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF370KVW bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQS, ENCFF807MUK 891494413 ENCODE Processing Pipeline 11db35d1aab11cb4a942e70a108a02c5 https://www.encodeproject.org/files/ENCFF370KVW/@@download/ENCFF370KVW.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF075LLZ bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQN, ENCFF807MUK 463070579 ENCODE Processing Pipeline 636b06304fca89097aaced94166f4d02 https://www.encodeproject.org/files/ENCFF075LLZ/@@download/ENCFF075LLZ.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF977HOJ bam unfiltered alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQN, ENCFF807MUK 786480801 ENCODE Processing Pipeline e6eba3b47b6025b6e30284c7d0ad696b https://www.encodeproject.org/files/ENCFF977HOJ/@@download/ENCFF977HOJ.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF297IQD bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF437WQX 7444532 ENCODE Processing Pipeline e291a7c57bbdb715bd884b231ed8e545 https://www.encodeproject.org/files/ENCFF297IQD/@@download/ENCFF297IQD.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF486VHS bigWig signal p-value ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF418UZJ 345310745 ENCODE Processing Pipeline 470a280039eeb870419d43e9cc3cf0c3 https://www.encodeproject.org/files/ENCFF486VHS/@@download/ENCFF486VHS.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF781KLO bigWig fold change over control ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF418UZJ 253361541 ENCODE Processing Pipeline 8458fb8a647344abfecb0f54b626c994 https://www.encodeproject.org/files/ENCFF781KLO/@@download/ENCFF781KLO.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF437WQX bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF068ETE 3519931 ENCODE Processing Pipeline e495a245b11ec2ef6ace87c8bb44ecfb https://www.encodeproject.org/files/ENCFF437WQX/@@download/ENCFF437WQX.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF234YHL bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF475TXE 8563431 ENCODE Processing Pipeline 53d57c0a96ce1acff974f6cd350c7e4f https://www.encodeproject.org/files/ENCFF234YHL/@@download/ENCFF234YHL.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF457PNF bigWig signal p-value ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF068ETE 309076942 ENCODE Processing Pipeline 56e8bca14b9b070f6ea2c25c4c520ba7 https://www.encodeproject.org/files/ENCFF457PNF/@@download/ENCFF457PNF.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF508UTJ bigWig signal p-value ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF068ETE, ENCFF418UZJ 357742008 ENCODE Processing Pipeline 3083a035678af7e1fb3ac52088975cab https://www.encodeproject.org/files/ENCFF508UTJ/@@download/ENCFF508UTJ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF983RTJ bigWig fold change over control ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF068ETE, ENCFF418UZJ 356541638 ENCODE Processing Pipeline a282edb9f4596afcb343952c65dbf7f5 https://www.encodeproject.org/files/ENCFF983RTJ/@@download/ENCFF983RTJ.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF209CTN bigWig fold change over control ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF068ETE 131406486 ENCODE Processing Pipeline d4eb3541376a696434c79274da44f72d https://www.encodeproject.org/files/ENCFF209CTN/@@download/ENCFF209CTN.bigWig GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF048QCW bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF418UZJ 3849264 ENCODE Processing Pipeline 694dedd1519c16ed74345f64da88d188 https://www.encodeproject.org/files/ENCFF048QCW/@@download/ENCFF048QCW.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF803RRC bed narrowPeak conservative idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF048QCW, ENCFF419RSJ, ENCFF437WQX, ENCFF475TXE 622957 ENCODE Processing Pipeline 9f3316d9fc5cec562b79391b81f45466 https://www.encodeproject.org/files/ENCFF803RRC/@@download/ENCFF803RRC.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF475TXE bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF068ETE, ENCFF418UZJ 4082046 ENCODE Processing Pipeline 05cada44df5f7ede630f544e358ae8d4 https://www.encodeproject.org/files/ENCFF475TXE/@@download/ENCFF475TXE.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF247IZZ bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF048QCW 7834413 ENCODE Processing Pipeline 53328308bbf26541dca1fc5110e12a46 https://www.encodeproject.org/files/ENCFF247IZZ/@@download/ENCFF247IZZ.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF849LVN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF803RRC 1233128 ENCODE Processing Pipeline 08720275927a41659a39ac9d48afd23c https://www.encodeproject.org/files/ENCFF849LVN/@@download/ENCFF849LVN.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF084FRB bed narrowPeak optimal idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF048QCW, ENCFF419RSJ, ENCFF437WQX, ENCFF475TXE 766109 ENCODE Processing Pipeline 121de95107b851aa6a14f19063df7be6 https://www.encodeproject.org/files/ENCFF084FRB/@@download/ENCFF084FRB.bed.gz GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF732HAM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF084FRB 1447180 ENCODE Processing Pipeline c246c5e13067f69e43a38a2b816c75ff https://www.encodeproject.org/files/ENCFF732HAM/@@download/ENCFF732HAM.bigBed GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF352KTL bigWig fold change over control ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF085RVS, ENCFF370KVW 253279889 ENCODE Processing Pipeline 6de3437b5985fe51b261ee2965e39f24 https://www.encodeproject.org/files/ENCFF352KTL/@@download/ENCFF352KTL.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF637DKG bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF085RVS, ENCFF370KVW 3805942 ENCODE Processing Pipeline 9e3e71ffed5f1b3f95cbd6697a875fcb https://www.encodeproject.org/files/ENCFF637DKG/@@download/ENCFF637DKG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF782RNW bigWig fold change over control ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF075LLZ, ENCFF085RVS 131697386 ENCODE Processing Pipeline 9e9673c1bc805f343bf72765a226a0b8 https://www.encodeproject.org/files/ENCFF782RNW/@@download/ENCFF782RNW.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF225OGR bigWig signal p-value ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF075LLZ, ENCFF085RVS, ENCFF370KVW 357223634 ENCODE Processing Pipeline 19b807e430fc0260019d151d31228ef9 https://www.encodeproject.org/files/ENCFF225OGR/@@download/ENCFF225OGR.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF261EVC bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF336VRJ 7438092 ENCODE Processing Pipeline 3c659dc11a7904ce81418efa629b801d https://www.encodeproject.org/files/ENCFF261EVC/@@download/ENCFF261EVC.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF445ATY bed narrowPeak optimal idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF336VRJ, ENCFF637DKG, ENCFF807PRZ 750841 ENCODE Processing Pipeline 9cb6f944b978f18fb4831d56fa835b97 https://www.encodeproject.org/files/ENCFF445ATY/@@download/ENCFF445ATY.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF401HGY bigWig signal p-value ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF075LLZ, ENCFF085RVS 281902377 ENCODE Processing Pipeline efc088ef1c35d185680e00535bcf2441 https://www.encodeproject.org/files/ENCFF401HGY/@@download/ENCFF401HGY.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF401KGR bigWig signal p-value ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF085RVS, ENCFF370KVW 344891496 ENCODE Processing Pipeline 1135b4cc8ae2b2ed015d24f223258272 https://www.encodeproject.org/files/ENCFF401KGR/@@download/ENCFF401KGR.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF552QNM bigWig fold change over control ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF075LLZ, ENCFF085RVS, ENCFF370KVW 352276135 ENCODE Processing Pipeline 4aaa962a6c800a9367867e373f341004 https://www.encodeproject.org/files/ENCFF552QNM/@@download/ENCFF552QNM.bigWig hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF336VRJ bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF075LLZ, ENCFF085RVS 3514521 ENCODE Processing Pipeline 1c0b9cf2b391dac91f5c84942cb675da https://www.encodeproject.org/files/ENCFF336VRJ/@@download/ENCFF336VRJ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF807PRZ bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF075LLZ, ENCFF085RVS, ENCFF370KVW 4049541 ENCODE Processing Pipeline 6304849b8124555f72beb3542d641da1 https://www.encodeproject.org/files/ENCFF807PRZ/@@download/ENCFF807PRZ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF381DPU bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF637DKG 7779324 ENCODE Processing Pipeline dfcef19b4e5e527bb1431d7b540cf24e https://www.encodeproject.org/files/ENCFF381DPU/@@download/ENCFF381DPU.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF789SBO bigBed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF807PRZ 8512138 ENCODE Processing Pipeline fedf16a18f52458d650f9faf53760478 https://www.encodeproject.org/files/ENCFF789SBO/@@download/ENCFF789SBO.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF658AFN bed narrowPeak conservative idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF336VRJ, ENCFF637DKG, ENCFF807PRZ 612307 ENCODE Processing Pipeline e2347e9a0cb0f46856cf4d469b03bbbe https://www.encodeproject.org/files/ENCFF658AFN/@@download/ENCFF658AFN.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF932GUF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF658AFN 1212813 ENCODE Processing Pipeline 7e82511a615d4b33fb908253c9f17b7d https://www.encodeproject.org/files/ENCFF932GUF/@@download/ENCFF932GUF.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF003VAR bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF445ATY 1420638 ENCODE Processing Pipeline e23e67c7986335306b337156d17050f5 https://www.encodeproject.org/files/ENCFF003VAR/@@download/ENCFF003VAR.bigBed hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000QIV bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 1 546887468 Richard Myers, HAIB f1a953d67a080ad4042eb446aab5c1c7 https://www.encodeproject.org/files/ENCFF000QIV/@@download/ENCFF000QIV.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QIX bigBed broadPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001ULV 450165 Richard Myers, HAIB b00a1c3ecfe60a7d292c55370621857d https://www.encodeproject.org/files/ENCFF000QIX/@@download/ENCFF000QIX.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QIZ bigBed broadPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001ULW 179975 Richard Myers, HAIB 3032b45c8496ff5006f2eb26ee621fe8 https://www.encodeproject.org/files/ENCFF000QIZ/@@download/ENCFF000QIZ.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QJA bigWig raw signal ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 1 297408871 Richard Myers, HAIB 09b19ccbfbbddcaead62be5e0e390904 https://www.encodeproject.org/files/ENCFF000QJA/@@download/ENCFF000QJA.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, missing derived_from, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QJB bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QJK 1687239678 Richard Myers, HAIB ea8f0a0159db423e13d79ada32d41d44 https://www.encodeproject.org/files/ENCFF000QJB/@@download/ENCFF000QJB.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QJC bigWig raw signal ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 1 90133224 Richard Myers, HAIB 29746fb0e97345f44f73ee46ad82f884 https://www.encodeproject.org/files/ENCFF000QJC/@@download/ENCFF000QJC.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QJH fastq reads ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 1 36 single-ended 513783371 Richard Myers, HAIB fc790de64236167c774a1e5a918bfaf7 https://www.encodeproject.org/files/ENCFF000QJH/@@download/ENCFF000QJH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF001RVN/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth, inconsistent control read length biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000QJK fastq reads ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 1 36 single-ended 1617203312 Richard Myers, HAIB 3b6f19d4bda8b74d005ba11575d306ea https://www.encodeproject.org/files/ENCFF000QJK/@@download/ENCFF000QJK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF001ULV bed broadPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 1 260642 Richard Myers, HAIB 0a69b06cf10e71e76523e2eb49d10009 https://www.encodeproject.org/files/ENCFF001ULV/@@download/ENCFF001ULV.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF001ULW bed broadPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 1 75553 Richard Myers, HAIB 93e116c0c7bd0deacafd7d88bfcd5f9a https://www.encodeproject.org/files/ENCFF001ULW/@@download/ENCFF001ULW.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF335TQY bam unfiltered alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF807MUK 1802619534 ENCODE Processing Pipeline 1e290d0d9e12262874d9ee6980574994 https://www.encodeproject.org/files/ENCFF335TQY/@@download/ENCFF335TQY.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF452MCW bam unfiltered alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF807MUK 586755093 ENCODE Processing Pipeline 5ba01d04ddb6bed839fec18ed9e69518 https://www.encodeproject.org/files/ENCFF452MCW/@@download/ENCFF452MCW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF482NNF bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QJH, ENCFF807MUK 395595102 ENCODE Processing Pipeline e151b5c765218c06df0a9d4c8f0fe716 https://www.encodeproject.org/files/ENCFF482NNF/@@download/ENCFF482NNF.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF275STF bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QJK, ENCFF807MUK 1143339499 ENCODE Processing Pipeline b1e4b57b59b9fc230d9c59e49b4790a5 https://www.encodeproject.org/files/ENCFF275STF/@@download/ENCFF275STF.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF906MHJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF858QMI 472857 ENCODE Processing Pipeline b3a7537ff806e5e9484a22de43811ec3 https://www.encodeproject.org/files/ENCFF906MHJ/@@download/ENCFF906MHJ.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF112GUK bigWig fold change over control ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF275STF, ENCFF522HDC 621497794 ENCODE Processing Pipeline 484cdecdae05d5e61d09dac9ecd84a1c https://www.encodeproject.org/files/ENCFF112GUK/@@download/ENCFF112GUK.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF447SUC bigWig fold change over control ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF275STF, ENCFF468ZDX, ENCFF482NNF, ENCFF522HDC 1032639188 ENCODE Processing Pipeline ef0b96796a33b6366832f825f4ac1cd1 https://www.encodeproject.org/files/ENCFF447SUC/@@download/ENCFF447SUC.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF140YDA bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF275STF, ENCFF522HDC 6352142 ENCODE Processing Pipeline 8b9ed27f9e33de801da5affaeec39691 https://www.encodeproject.org/files/ENCFF140YDA/@@download/ENCFF140YDA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF721WZY bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF275STF, ENCFF468ZDX, ENCFF482NNF, ENCFF522HDC 6846560 ENCODE Processing Pipeline e66f5d29cd95a43e2d6f62e5a3bafe37 https://www.encodeproject.org/files/ENCFF721WZY/@@download/ENCFF721WZY.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF848EGA bigWig signal p-value ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF468ZDX, ENCFF482NNF 485755478 ENCODE Processing Pipeline d83560aa1e49624aa0b6fb2e5df0ac93 https://www.encodeproject.org/files/ENCFF848EGA/@@download/ENCFF848EGA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF034IPI bigBed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF721WZY 13451268 ENCODE Processing Pipeline 5ee4e32e6f3d2f8b204dc1ae1ff3edf3 https://www.encodeproject.org/files/ENCFF034IPI/@@download/ENCFF034IPI.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF600QVD bed narrowPeak conservative idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF140YDA, ENCFF700BWV, ENCFF721WZY 135841 ENCODE Processing Pipeline 596ec4ba387fcc19d849fec109208b15 https://www.encodeproject.org/files/ENCFF600QVD/@@download/ENCFF600QVD.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF959MYV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF600QVD 319720 ENCODE Processing Pipeline 73a9ac1ee3ae4fd7199b345989e9f32b https://www.encodeproject.org/files/ENCFF959MYV/@@download/ENCFF959MYV.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF461HUA bigWig fold change over control ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF468ZDX, ENCFF482NNF 271413332 ENCODE Processing Pipeline dfe6b065a554d58ad973c53354d58ee5 https://www.encodeproject.org/files/ENCFF461HUA/@@download/ENCFF461HUA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF597BEZ bigWig signal p-value ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF275STF, ENCFF522HDC 606123769 ENCODE Processing Pipeline 497f34f45682e81b239bc2de517413ab https://www.encodeproject.org/files/ENCFF597BEZ/@@download/ENCFF597BEZ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF679RWO bigWig signal p-value ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF275STF, ENCFF468ZDX, ENCFF482NNF, ENCFF522HDC 1059502875 ENCODE Processing Pipeline 84786e12dea8c6ea359f734f914bc9a3 https://www.encodeproject.org/files/ENCFF679RWO/@@download/ENCFF679RWO.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF700BWV bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF468ZDX, ENCFF482NNF 3992676 ENCODE Processing Pipeline 9d32157d894fd70a374755130566ef07 https://www.encodeproject.org/files/ENCFF700BWV/@@download/ENCFF700BWV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF091OTC bigBed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF140YDA 13294518 ENCODE Processing Pipeline efe716b018c7be0427988528dc75f433 https://www.encodeproject.org/files/ENCFF091OTC/@@download/ENCFF091OTC.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF938ETZ bigBed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF700BWV 8957433 ENCODE Processing Pipeline 6a2ff89a9067c3aee890fce57e8c4949 https://www.encodeproject.org/files/ENCFF938ETZ/@@download/ENCFF938ETZ.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF858QMI bed narrowPeak optimal idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF140YDA, ENCFF700BWV, ENCFF721WZY 243606 ENCODE Processing Pipeline d4d2b801157ddbdfb7166fcf31bbfb22 https://www.encodeproject.org/files/ENCFF858QMI/@@download/ENCFF858QMI.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF904CPI bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF643CGH 395471962 ENCODE Processing Pipeline 12382461a588965b5a5e4ade25dc4f13 https://www.encodeproject.org/files/ENCFF904CPI/@@download/ENCFF904CPI.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF648HIU bam unfiltered alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF643CGH 588138482 ENCODE Processing Pipeline 4b5e07434e7abd792781f3e3a1549860 https://www.encodeproject.org/files/ENCFF648HIU/@@download/ENCFF648HIU.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF555KVE bam unfiltered alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF643CGH 1807291659 ENCODE Processing Pipeline d29d127bba63d7baa3e3b285bc9ebac4 https://www.encodeproject.org/files/ENCFF555KVE/@@download/ENCFF555KVE.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF397ZVS bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF643CGH 1142970133 ENCODE Processing Pipeline 01b13d86d1af15d2174a91611388f0e5 https://www.encodeproject.org/files/ENCFF397ZVS/@@download/ENCFF397ZVS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF261BMQ fastq reads ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 1 36 single-ended 1068924080 Richard Myers, HAIB 62b84201e70f3e0daf42e1ca37052ae7 https://www.encodeproject.org/files/ENCFF261BMQ/@@download/ENCFF261BMQ.fastq.gz Illumina HiSeq 2000 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth, missing controlled_by ENCFF776LSV bigWig signal p-value ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF397ZVS, ENCFF836OEO 631562337 ENCODE Processing Pipeline 74523a8f711513fcc79f0ef4de65eff5 https://www.encodeproject.org/files/ENCFF776LSV/@@download/ENCFF776LSV.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF814OOG bigWig signal p-value ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF204GLJ, ENCFF904CPI 494990899 ENCODE Processing Pipeline b746dd97e7d9e0b27c66fef5632b1f1a https://www.encodeproject.org/files/ENCFF814OOG/@@download/ENCFF814OOG.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF795LAL bigWig signal p-value ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF204GLJ, ENCFF397ZVS, ENCFF836OEO, ENCFF904CPI 1016937018 ENCODE Processing Pipeline 9eb518f115cae4be345080927aafcb6e https://www.encodeproject.org/files/ENCFF795LAL/@@download/ENCFF795LAL.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF726ONU bigWig fold change over control ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF397ZVS, ENCFF836OEO 630788200 ENCODE Processing Pipeline d1220007ff87f9fb50b950c32b2fcd8c https://www.encodeproject.org/files/ENCFF726ONU/@@download/ENCFF726ONU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF545YAP bigWig fold change over control ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF204GLJ, ENCFF904CPI 280246823 ENCODE Processing Pipeline 483b1b70b8275a4460c65650dd96a60c https://www.encodeproject.org/files/ENCFF545YAP/@@download/ENCFF545YAP.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF168SJR bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF204GLJ, ENCFF904CPI 3902770 ENCODE Processing Pipeline 3b4795c308d9de113ba1b9b69af16b65 https://www.encodeproject.org/files/ENCFF168SJR/@@download/ENCFF168SJR.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF845IXT bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF397ZVS, ENCFF836OEO 6215754 ENCODE Processing Pipeline 3480c7f0cc1a561f4a9a8dcd0483d627 https://www.encodeproject.org/files/ENCFF845IXT/@@download/ENCFF845IXT.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF651CUK bigWig fold change over control ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF204GLJ, ENCFF397ZVS, ENCFF836OEO, ENCFF904CPI 1022478338 ENCODE Processing Pipeline 94f8d9a79d14f474f900a37c25b3a235 https://www.encodeproject.org/files/ENCFF651CUK/@@download/ENCFF651CUK.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF542DYA bigBed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF565FCD 13456246 ENCODE Processing Pipeline b9a69f3186cf77a4974ecaff051ec4d4 https://www.encodeproject.org/files/ENCFF542DYA/@@download/ENCFF542DYA.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF565FCD bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF204GLJ, ENCFF397ZVS, ENCFF836OEO, ENCFF904CPI 6718047 ENCODE Processing Pipeline 5f5e6b6f11ecd17173fef24c2bb08cfe https://www.encodeproject.org/files/ENCFF565FCD/@@download/ENCFF565FCD.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF888CBW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF996AMX 476524 ENCODE Processing Pipeline 90bd3a5d4757112b311ccc296f1b7c7d https://www.encodeproject.org/files/ENCFF888CBW/@@download/ENCFF888CBW.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF592VHW bigBed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF168SJR 8863372 ENCODE Processing Pipeline 8fb68e43ad0cb4186674c4a2542fa53a https://www.encodeproject.org/files/ENCFF592VHW/@@download/ENCFF592VHW.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF399ERD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF528EDV 317895 ENCODE Processing Pipeline 34d165faa2f2d916b552b58ae654ced2 https://www.encodeproject.org/files/ENCFF399ERD/@@download/ENCFF399ERD.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF060UUD bam unfiltered alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF643CGH 1807291664 ENCODE Processing Pipeline 67d0516d5ba6eb718e238da6964a1a79 https://www.encodeproject.org/files/ENCFF060UUD/@@download/ENCFF060UUD.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF592IZF bigBed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF845IXT 13329880 ENCODE Processing Pipeline 24c25e4f016d7f2d43bdf71b6550da7f https://www.encodeproject.org/files/ENCFF592IZF/@@download/ENCFF592IZF.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF528EDV bed narrowPeak conservative idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF168SJR, ENCFF419RSJ, ENCFF565FCD, ENCFF845IXT 134702 ENCODE Processing Pipeline e6cf147e42dd3a8517369d47aae30b05 https://www.encodeproject.org/files/ENCFF528EDV/@@download/ENCFF528EDV.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF996AMX bed narrowPeak optimal idr thresholded peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF168SJR, ENCFF419RSJ, ENCFF565FCD, ENCFF845IXT 246030 ENCODE Processing Pipeline 360d0e8096959f20f6c52a978ed25c87 https://www.encodeproject.org/files/ENCFF996AMX/@@download/ENCFF996AMX.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF147MVP bam unfiltered alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF261BMQ, ENCFF643CGH 1362097283 ENCODE Processing Pipeline 57f6911f9f6857f62f9f8e69b1861ea1 https://www.encodeproject.org/files/ENCFF147MVP/@@download/ENCFF147MVP.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF206YYH bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF261BMQ, ENCFF643CGH 789991107 ENCODE Processing Pipeline 1a3c8ed2582f34e8cc3ee156cdb5d5e3 https://www.encodeproject.org/files/ENCFF206YYH/@@download/ENCFF206YYH.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF793KZB bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF643CGH 1142970137 ENCODE Processing Pipeline 87e80543df35e3da7289fe2be473c8f7 https://www.encodeproject.org/files/ENCFF793KZB/@@download/ENCFF793KZB.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF000CIX bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF000CJH 818385031 Bradley Bernstein, Broad e2160645116330fc1b482be2a83e8e7a https://www.encodeproject.org/files/ENCFF000CIX/@@download/ENCFF000CIX.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000CIY bigBed broadPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TBH 2513323 Bradley Bernstein, Broad b13d3b2a967591e154c46b3ab64b70bc https://www.encodeproject.org/files/ENCFF000CIY/@@download/ENCFF000CIY.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000CJA bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF000CJJ 877122748 Bradley Bernstein, Broad 7dea483bcd0e280d6cb5bc25bf55039d https://www.encodeproject.org/files/ENCFF000CJA/@@download/ENCFF000CJA.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000CJB bigWig signal ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF000CIX, ENCFF000CJA 337429056 Bradley Bernstein, Broad 0e1f9e1ede6a32264f99a82f69cf803b https://www.encodeproject.org/files/ENCFF000CJB/@@download/ENCFF000CJB.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000CJH fastq reads ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 886734119 Bradley Bernstein, Broad 0242fb325c946f797d8cc4558e52d350 https://www.encodeproject.org/files/ENCFF000CJH/@@download/ENCFF000CJH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000CIW/ released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000CJJ fastq reads ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1022657443 Bradley Bernstein, Broad 1f0742ab3f38215d043ce7822ad74c06 https://www.encodeproject.org/files/ENCFF000CJJ/@@download/ENCFF000CJJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000CIU/ released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001TBH bed broadPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF000CIX, ENCFF000CJA 1613858 Bradley Bernstein, Broad 5b76012442d59c310fa9529296b3ed5f https://www.encodeproject.org/files/ENCFF001TBH/@@download/ENCFF001TBH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF002CEZ bed narrowPeak optimal idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF000CIX, ENCFF000CJA 131222 ENCODE Consortium Analysis Working Group 287ec89b9a3dbe365223c0b8815f8de0 https://www.encodeproject.org/files/ENCFF002CEZ/@@download/ENCFF002CEZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF749CYF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF002CEZ 371932 ENCODE Consortium 4b7b99999ae1fe272ad7b3a23f0e591b https://www.encodeproject.org/files/ENCFF749CYF/@@download/ENCFF749CYF.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF604CGY bam unfiltered alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CJH, ENCFF643CGH 1082372692 ENCODE Processing Pipeline 688bee8e687c099cfe810bc6d159c58d https://www.encodeproject.org/files/ENCFF604CGY/@@download/ENCFF604CGY.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF150RAO bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CJH, ENCFF643CGH 486175140 ENCODE Processing Pipeline 413ccc80101548410a74ac713e8ec893 https://www.encodeproject.org/files/ENCFF150RAO/@@download/ENCFF150RAO.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF159AEY bam unfiltered alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CJJ, ENCFF643CGH 1220581993 ENCODE Processing Pipeline 73aa2276b54a29d4c96016a02e14b65a https://www.encodeproject.org/files/ENCFF159AEY/@@download/ENCFF159AEY.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF142AQQ bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CJJ, ENCFF643CGH 478148467 ENCODE Processing Pipeline 605c9b6fd41c5adf7c51d8d5915bb351 https://www.encodeproject.org/files/ENCFF142AQQ/@@download/ENCFF142AQQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF530XPP bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CJH, ENCFF807MUK 486585943 ENCODE Processing Pipeline ad8ab6f05b365f10795c6215b89f9fbe https://www.encodeproject.org/files/ENCFF530XPP/@@download/ENCFF530XPP.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF332XKK bam unfiltered alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CJJ, ENCFF807MUK 1215768996 ENCODE Processing Pipeline b72be82e76c2fd9961c7ba3dea4f0dfc https://www.encodeproject.org/files/ENCFF332XKK/@@download/ENCFF332XKK.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF084BST bam unfiltered alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CJH, ENCFF807MUK 1077644332 ENCODE Processing Pipeline aaafcae43a491166b87ffaa5e6503388 https://www.encodeproject.org/files/ENCFF084BST/@@download/ENCFF084BST.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF893UBS bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CJJ, ENCFF807MUK 478614081 ENCODE Processing Pipeline 6307732b18b681e8838cd85ad07cb7d1 https://www.encodeproject.org/files/ENCFF893UBS/@@download/ENCFF893UBS.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF378RMN bigWig signal p-value ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP 569455904 ENCODE Processing Pipeline 21ec45860f2b62e5794bc8c97fa10956 https://www.encodeproject.org/files/ENCFF378RMN/@@download/ENCFF378RMN.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF917ASY bigWig fold change over control ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP 333763915 ENCODE Processing Pipeline 2df856fdb1510143ad985b1a5c0e4879 https://www.encodeproject.org/files/ENCFF917ASY/@@download/ENCFF917ASY.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF606OIA bigWig signal p-value ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF893UBS 606935888 ENCODE Processing Pipeline ef12480f5d14f04577b6ad79598b6436 https://www.encodeproject.org/files/ENCFF606OIA/@@download/ENCFF606OIA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF120HBB bigWig signal p-value ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP, ENCFF893UBS 657859424 ENCODE Processing Pipeline 691999aeb255b2bfe8b4253545d10a70 https://www.encodeproject.org/files/ENCFF120HBB/@@download/ENCFF120HBB.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF531THC bigWig fold change over control ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF893UBS 309866458 ENCODE Processing Pipeline 47cf02b7504e4e469501c926f97831ce https://www.encodeproject.org/files/ENCFF531THC/@@download/ENCFF531THC.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF159CTV bigWig fold change over control ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP, ENCFF893UBS 538182910 ENCODE Processing Pipeline 2f37d607b09abe9abd1a7eeae450bb32 https://www.encodeproject.org/files/ENCFF159CTV/@@download/ENCFF159CTV.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF585OAO bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP 5268005 ENCODE Processing Pipeline b3856c6679fc00a1712e3de42b8620f5 https://www.encodeproject.org/files/ENCFF585OAO/@@download/ENCFF585OAO.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF551TJN bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF893UBS 5928070 ENCODE Processing Pipeline 11b442b8018b0e3bb62e971e40848039 https://www.encodeproject.org/files/ENCFF551TJN/@@download/ENCFF551TJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF226DWG bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP, ENCFF893UBS 6535474 ENCODE Processing Pipeline 6d7ada09e6fe136cbf3659b4f558bec7 https://www.encodeproject.org/files/ENCFF226DWG/@@download/ENCFF226DWG.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF823KZN bigBed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF585OAO 13104464 ENCODE Processing Pipeline 693cc191897c5541968647a70c41b8f2 https://www.encodeproject.org/files/ENCFF823KZN/@@download/ENCFF823KZN.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF723DLR bigBed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF551TJN 12720423 ENCODE Processing Pipeline 0bdb5f711f7ff557a00f78488bc50102 https://www.encodeproject.org/files/ENCFF723DLR/@@download/ENCFF723DLR.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF662HDP bigBed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF226DWG 12780612 ENCODE Processing Pipeline 3806e56ab1574eda4ea3afb3eefaa885 https://www.encodeproject.org/files/ENCFF662HDP/@@download/ENCFF662HDP.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF674UXE bigBed narrowPeak optimal idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF156CFD 564794 ENCODE Processing Pipeline a8479a80e240eea3165ccbf90594dd96 https://www.encodeproject.org/files/ENCFF674UXE/@@download/ENCFF674UXE.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF639HLV bed narrowPeak conservative idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF226DWG, ENCFF551TJN, ENCFF585OAO 219933 ENCODE Processing Pipeline ef5f3e5bbf6161256a35a13287cd456c https://www.encodeproject.org/files/ENCFF639HLV/@@download/ENCFF639HLV.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF702GIJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF639HLV 527908 ENCODE Processing Pipeline 378133a8ff454b087232ce2e3e0a6e44 https://www.encodeproject.org/files/ENCFF702GIJ/@@download/ENCFF702GIJ.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF156CFD bed narrowPeak optimal idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF226DWG, ENCFF551TJN, ENCFF585OAO 236848 ENCODE Processing Pipeline be0dd461421f8d0c3111eab20915f28c https://www.encodeproject.org/files/ENCFF156CFD/@@download/ENCFF156CFD.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF521SQO bigWig signal p-value ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF150RAO, ENCFF638YZB, ENCFF782IQQ 545131823 ENCODE Processing Pipeline f3f88146cceacbacdd9cece2fd897256 https://www.encodeproject.org/files/ENCFF521SQO/@@download/ENCFF521SQO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF167IMW bigWig fold change over control ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF150RAO, ENCFF638YZB, ENCFF782IQQ 328998644 ENCODE Processing Pipeline 09f7267b7a48ddb6ed8bd724e8ea646d https://www.encodeproject.org/files/ENCFF167IMW/@@download/ENCFF167IMW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF477EKX bigWig signal p-value ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF142AQQ, ENCFF638YZB, ENCFF782IQQ 514569537 ENCODE Processing Pipeline 3261948319a9d5f508e9e0e577049217 https://www.encodeproject.org/files/ENCFF477EKX/@@download/ENCFF477EKX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF801DBC bigWig signal p-value ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF142AQQ, ENCFF150RAO, ENCFF638YZB, ENCFF782IQQ 623035076 ENCODE Processing Pipeline a4a57aa0f40940127a340add532eedfd https://www.encodeproject.org/files/ENCFF801DBC/@@download/ENCFF801DBC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF491DUP bigWig fold change over control ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF142AQQ, ENCFF638YZB, ENCFF782IQQ 310685800 ENCODE Processing Pipeline 1610daee84d27102c865e912ac4da259 https://www.encodeproject.org/files/ENCFF491DUP/@@download/ENCFF491DUP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF556JXZ bigWig fold change over control ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF142AQQ, ENCFF150RAO, ENCFF638YZB, ENCFF782IQQ 545495824 ENCODE Processing Pipeline 921fa04b59c017c25818275d4aea213c https://www.encodeproject.org/files/ENCFF556JXZ/@@download/ENCFF556JXZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF124DUJ bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF150RAO, ENCFF638YZB, ENCFF782IQQ 5100103 ENCODE Processing Pipeline 34b09076718fb6af22f1f8e8e483b5ee https://www.encodeproject.org/files/ENCFF124DUJ/@@download/ENCFF124DUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF797UMO bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF142AQQ, ENCFF638YZB, ENCFF782IQQ 5902488 ENCODE Processing Pipeline 4cf12df0a52a0d3b10bf7a003f36d9b6 https://www.encodeproject.org/files/ENCFF797UMO/@@download/ENCFF797UMO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF119YFP bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF142AQQ, ENCFF150RAO, ENCFF638YZB, ENCFF782IQQ 6590605 ENCODE Processing Pipeline eb32bfb2bd4704c72ae322729eb27e66 https://www.encodeproject.org/files/ENCFF119YFP/@@download/ENCFF119YFP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF853ETL bigBed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF124DUJ 13080939 ENCODE Processing Pipeline 547b6f9c71d95d55548577d62bf1e90f https://www.encodeproject.org/files/ENCFF853ETL/@@download/ENCFF853ETL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF396LOZ bigBed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF797UMO 12699642 ENCODE Processing Pipeline ee527e422c84f2df783a41f841df86db https://www.encodeproject.org/files/ENCFF396LOZ/@@download/ENCFF396LOZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF103GGV bigBed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF119YFP 12802358 ENCODE Processing Pipeline 89caf9fe3dc0a9232e3d87f1bab8ab15 https://www.encodeproject.org/files/ENCFF103GGV/@@download/ENCFF103GGV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF618OSB bed narrowPeak conservative idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF119YFP, ENCFF124DUJ, ENCFF419RSJ, ENCFF797UMO 228222 ENCODE Processing Pipeline 3b34bac363856de58316842e7e8b44d0 https://www.encodeproject.org/files/ENCFF618OSB/@@download/ENCFF618OSB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF874ZAN bigBed narrowPeak conservative idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF618OSB 540761 ENCODE Processing Pipeline 5b231a8692c4b9bdabdff7f4a39eca21 https://www.encodeproject.org/files/ENCFF874ZAN/@@download/ENCFF874ZAN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF276OYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF340LPI 572172 ENCODE Processing Pipeline 3a0d54020cbfb29b8dece45cf57a95df https://www.encodeproject.org/files/ENCFF276OYQ/@@download/ENCFF276OYQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF340LPI bed narrowPeak optimal idr thresholded peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF119YFP, ENCFF124DUJ, ENCFF419RSJ, ENCFF797UMO 243149 ENCODE Processing Pipeline 15cd0dd0ea40767ea9c7707d157c1c0a https://www.encodeproject.org/files/ENCFF340LPI/@@download/ENCFF340LPI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000ZQG bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VQX 1304602 Michael Snyder, Stanford d9cc66012c1602b742766fee7b4fd84d https://www.encodeproject.org/files/ENCFF000ZQG/@@download/ENCFF000ZQG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZQH bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 1 511090968 Michael Snyder, Stanford c86875175d490877995919cf54df9c7d https://www.encodeproject.org/files/ENCFF000ZQH/@@download/ENCFF000ZQH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZQI fastq reads ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 1007329001 Michael Snyder, Stanford aa91a6fb4251ce26c45f35d2c3c5978f https://www.encodeproject.org/files/ENCFF000ZQI/@@download/ENCFF000ZQI.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQO/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZQK bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 1 426637036 Michael Snyder, Stanford 718b6561588258641b1dc174ede17bfd https://www.encodeproject.org/files/ENCFF000ZQK/@@download/ENCFF000ZQK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZQL fastq reads ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 813513498 Michael Snyder, Stanford 931a96b1f8096a8b7715f2759bd7541e https://www.encodeproject.org/files/ENCFF000ZQL/@@download/ENCFF000ZQL.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZQN bigWig signal ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 441869666 Michael Snyder, Stanford 4297f5ce02b2cddb684f9f1d94713930 https://www.encodeproject.org/files/ENCFF000ZQN/@@download/ENCFF000ZQN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VQX bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 708294 Michael Snyder, Stanford 7a2f0bf6b17a58cf1323eafca3620824 https://www.encodeproject.org/files/ENCFF001VQX/@@download/ENCFF001VQX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF347NPN bam unfiltered alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQL, ENCFF643CGH 877213521 ENCODE Processing Pipeline 620eb8682911040a3c19d7ecb7e2e640 https://www.encodeproject.org/files/ENCFF347NPN/@@download/ENCFF347NPN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430DOC bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQL, ENCFF643CGH 555282710 ENCODE Processing Pipeline b44984c852327c539f73e0938c3cef6c https://www.encodeproject.org/files/ENCFF430DOC/@@download/ENCFF430DOC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF973FUN bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQI, ENCFF643CGH 683076182 ENCODE Processing Pipeline 9b7d103898feaf44718230983300bb31 https://www.encodeproject.org/files/ENCFF973FUN/@@download/ENCFF973FUN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF458TFX bam unfiltered alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQI, ENCFF643CGH 1061481561 ENCODE Processing Pipeline 8b28e797bb923f2b4a8d68760b8cdab2 https://www.encodeproject.org/files/ENCFF458TFX/@@download/ENCFF458TFX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF526WQS bam unfiltered alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQL, ENCFF807MUK 873391393 ENCODE Processing Pipeline cebbbd9dcbb0c20dc9fda9b7842a3d94 https://www.encodeproject.org/files/ENCFF526WQS/@@download/ENCFF526WQS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF436XSF bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQL, ENCFF807MUK 555537977 ENCODE Processing Pipeline 45715f7223f4c954bab5da2e4b5aa9b5 https://www.encodeproject.org/files/ENCFF436XSF/@@download/ENCFF436XSF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF820ZCO bam unfiltered alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQI, ENCFF807MUK 1058456271 ENCODE Processing Pipeline 570890ad25522e4dbac989a635bea1d5 https://www.encodeproject.org/files/ENCFF820ZCO/@@download/ENCFF820ZCO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF898GKX bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQI, ENCFF807MUK 683365141 ENCODE Processing Pipeline ff3c59cd24d57b83b393194cc574313e https://www.encodeproject.org/files/ENCFF898GKX/@@download/ENCFF898GKX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460LCR bigWig signal p-value ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC, ENCFF973FUN 599671450 ENCODE Processing Pipeline 5213bac53155eb84b1dfc9d62ed3895a https://www.encodeproject.org/files/ENCFF460LCR/@@download/ENCFF460LCR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500IGC bigWig fold change over control ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF973FUN 359528512 ENCODE Processing Pipeline 435da4c038325cc4d4c63c37febdcc22 https://www.encodeproject.org/files/ENCFF500IGC/@@download/ENCFF500IGC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF944FHB bigWig fold change over control ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC, ENCFF973FUN 581521055 ENCODE Processing Pipeline 6b1c981c6c5115ee4914e48733aac4c0 https://www.encodeproject.org/files/ENCFF944FHB/@@download/ENCFF944FHB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF033HNE bigWig signal p-value ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF973FUN 480769108 ENCODE Processing Pipeline 762d8efe443c276a21c0974542658e71 https://www.encodeproject.org/files/ENCFF033HNE/@@download/ENCFF033HNE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF310CHY bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF144BVJ, ENCFF282PXC, ENCFF973FUN 4891506 ENCODE Processing Pipeline fd37992521dc7b9fefd16b6be5b8a1e7 https://www.encodeproject.org/files/ENCFF310CHY/@@download/ENCFF310CHY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF640OIF bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC, ENCFF973FUN 5275998 ENCODE Processing Pipeline faaf6856476587828640fb5bb85da691 https://www.encodeproject.org/files/ENCFF640OIF/@@download/ENCFF640OIF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF651EST bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF679FHL 11027997 ENCODE Processing Pipeline 1520ac4e9cdfca0794dce75978dd3243 https://www.encodeproject.org/files/ENCFF651EST/@@download/ENCFF651EST.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF179KLG bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF640OIF 11828399 ENCODE Processing Pipeline efccbb96eec8427dc2c2029c886356bc https://www.encodeproject.org/files/ENCFF179KLG/@@download/ENCFF179KLG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF241SRR bed narrowPeak conservative idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF310CHY, ENCFF419RSJ, ENCFF640OIF, ENCFF679FHL 815784 ENCODE Processing Pipeline b7cef829929cd553e2240ce71c296690 https://www.encodeproject.org/files/ENCFF241SRR/@@download/ENCFF241SRR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF074MUY bigWig fold change over control ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC 333286419 ENCODE Processing Pipeline 62dfaa3cf126622da381e08d5624cd30 https://www.encodeproject.org/files/ENCFF074MUY/@@download/ENCFF074MUY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF907DFC bigWig signal p-value ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC 439534797 ENCODE Processing Pipeline 926a9dd85f9677c7bef3a385506f0930 https://www.encodeproject.org/files/ENCFF907DFC/@@download/ENCFF907DFC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540DWT bed narrowPeak optimal idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF310CHY, ENCFF419RSJ, ENCFF640OIF, ENCFF679FHL 883745 ENCODE Processing Pipeline 400c814ed87043db0c2602ebcab39556 https://www.encodeproject.org/files/ENCFF540DWT/@@download/ENCFF540DWT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471GCF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF540DWT 1583745 ENCODE Processing Pipeline 990e1f3767ed655d4cc5fb64010a605d https://www.encodeproject.org/files/ENCFF471GCF/@@download/ENCFF471GCF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF679FHL bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF144BVJ, ENCFF282PXC, ENCFF430DOC 4507986 ENCODE Processing Pipeline d85fffc3082c57c603ee640693661ddc https://www.encodeproject.org/files/ENCFF679FHL/@@download/ENCFF679FHL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF120DTC bigBed narrowPeak conservative idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF241SRR 1492154 ENCODE Processing Pipeline 18ac1e1ff34640279412f17935f23bf0 https://www.encodeproject.org/files/ENCFF120DTC/@@download/ENCFF120DTC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF852ASV bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF310CHY 11328260 ENCODE Processing Pipeline 487ef26addf476f5de1835d2c2581a92 https://www.encodeproject.org/files/ENCFF852ASV/@@download/ENCFF852ASV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF265YTU bigWig fold change over control ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF666ZPP, ENCFF898GKX 360185965 ENCODE Processing Pipeline 7a28a0cba1efc057f28568120ac364e4 https://www.encodeproject.org/files/ENCFF265YTU/@@download/ENCFF265YTU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF944XSR bigWig signal p-value ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP, ENCFF898GKX 599866425 ENCODE Processing Pipeline 4f179e7c115a49a2bd8824356349176e https://www.encodeproject.org/files/ENCFF944XSR/@@download/ENCFF944XSR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF230YHI bigWig signal p-value ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP 441860828 ENCODE Processing Pipeline f04a5ef96ba09dab89eb95462c303571 https://www.encodeproject.org/files/ENCFF230YHI/@@download/ENCFF230YHI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF982WZE bigWig fold change over control ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP 330994897 ENCODE Processing Pipeline d8aeca65721ffcb10ae86e75bc66339e https://www.encodeproject.org/files/ENCFF982WZE/@@download/ENCFF982WZE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF987VCI bigWig fold change over control ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP, ENCFF898GKX 580508398 ENCODE Processing Pipeline 65083c865ddc4c2a9da886a804dd4140 https://www.encodeproject.org/files/ENCFF987VCI/@@download/ENCFF987VCI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF068IFJ bigWig signal p-value ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF666ZPP, ENCFF898GKX 449433782 ENCODE Processing Pipeline 8e8fdfdc8b6c16b77f91ee0c4e47907e https://www.encodeproject.org/files/ENCFF068IFJ/@@download/ENCFF068IFJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF960NKG bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP 4508906 ENCODE Processing Pipeline 06a8d9a3d2379245714e0e572d416e4d https://www.encodeproject.org/files/ENCFF960NKG/@@download/ENCFF960NKG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF079HZU bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP, ENCFF898GKX 5276906 ENCODE Processing Pipeline a71cc5fc2d1bd765521fcaa406699105 https://www.encodeproject.org/files/ENCFF079HZU/@@download/ENCFF079HZU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF781THQ bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF666ZPP, ENCFF898GKX 4888991 ENCODE Processing Pipeline 61add53be443cca89b2fa618eb62f339 https://www.encodeproject.org/files/ENCFF781THQ/@@download/ENCFF781THQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF621UHP bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF781THQ 11324916 ENCODE Processing Pipeline 5cf491b47eaa834b7c675515c1c66618 https://www.encodeproject.org/files/ENCFF621UHP/@@download/ENCFF621UHP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF172EHT bed narrowPeak conservative idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF079HZU, ENCFF781THQ, ENCFF960NKG 814005 ENCODE Processing Pipeline 7e8105e3de399b45ce24f6bbed49069a https://www.encodeproject.org/files/ENCFF172EHT/@@download/ENCFF172EHT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF637PMF bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF079HZU 11822602 ENCODE Processing Pipeline e8b6f6669c4e41e31fc4884726bc536b https://www.encodeproject.org/files/ENCFF637PMF/@@download/ENCFF637PMF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF826BSS bigBed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF960NKG 11022866 ENCODE Processing Pipeline a22f8d41bab6abbdeaaf67f5dd87b6c2 https://www.encodeproject.org/files/ENCFF826BSS/@@download/ENCFF826BSS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF691QIO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF172EHT 1489114 ENCODE Processing Pipeline 616edf03d3062a3a9e686c7330698253 https://www.encodeproject.org/files/ENCFF691QIO/@@download/ENCFF691QIO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF861DPF bed narrowPeak optimal idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF079HZU, ENCFF781THQ, ENCFF960NKG 888678 ENCODE Processing Pipeline 2669e0f55968e04ed42440428a06c9df https://www.encodeproject.org/files/ENCFF861DPF/@@download/ENCFF861DPF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF829AVX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF861DPF 1589083 ENCODE Processing Pipeline f68b571ce2278f8cf86f615b85600394 https://www.encodeproject.org/files/ENCFF829AVX/@@download/ENCFF829AVX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OJD bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OJM 1121252639 Richard Myers, HAIB 9a9d8570ccc788332934b963d18156c3 https://www.encodeproject.org/files/ENCFF000OJD/@@download/ENCFF000OJD.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OJE bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OJL 838927569 Richard Myers, HAIB 504adbe6efb8a8b57f0bd1e7090934dc https://www.encodeproject.org/files/ENCFF000OJE/@@download/ENCFF000OJE.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OJF bigBed broadPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAC 1376529 Richard Myers, HAIB e3da0a49e8032b2a7812928c1bd08cfc https://www.encodeproject.org/files/ENCFF000OJF/@@download/ENCFF000OJF.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OJG bigBed broadPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAD 877239 Richard Myers, HAIB d80492233368fb6fcba97552d1ea2fa7 https://www.encodeproject.org/files/ENCFF000OJG/@@download/ENCFF000OJG.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OJI bigWig raw signal ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 55102160 Richard Myers, HAIB 2fdf5ac8961b13a516337c7e57ef8a7b https://www.encodeproject.org/files/ENCFF000OJI/@@download/ENCFF000OJI.bigWig hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OJJ bigWig raw signal ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36980137 Richard Myers, HAIB 4c3dcc23f470f95b1703dd007242db84 https://www.encodeproject.org/files/ENCFF000OJJ/@@download/ENCFF000OJJ.bigWig hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000OJL fastq reads ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 881848482 Richard Myers, HAIB 35d6f5b67efd8d533b65abe5cb9c99e7 https://www.encodeproject.org/files/ENCFF000OJL/@@download/ENCFF000OJL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OJM fastq reads ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1390258232 Richard Myers, HAIB ffd6e27e2c0b3361cf0d2f88b52b41b7 https://www.encodeproject.org/files/ENCFF000OJM/@@download/ENCFF000OJM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OJU/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF001UAC bed broadPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 1 915698 Richard Myers, HAIB 84d3fbb0c637dd7172a73c5bf9a8daa3 https://www.encodeproject.org/files/ENCFF001UAC/@@download/ENCFF001UAC.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UAD bed broadPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 1 517713 Richard Myers, HAIB bcf4e0246e35bef06ade8421f114a824 https://www.encodeproject.org/files/ENCFF001UAD/@@download/ENCFF001UAD.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CIJ bed narrowPeak optimal idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1209797 ENCODE Consortium Analysis Working Group 08161bbdfa7636291c380aafb6743949 https://www.encodeproject.org/files/ENCFF002CIJ/@@download/ENCFF002CIJ.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF544YOJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIJ 2734329 ENCODE Consortium dec6ee2452a45b439b59201ccb0ecd62 https://www.encodeproject.org/files/ENCFF544YOJ/@@download/ENCFF544YOJ.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF300OET bam unfiltered alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJL, ENCFF643CGH 1101612416 ENCODE Processing Pipeline cc20d750ab6b2d61cb6feea68590af64 https://www.encodeproject.org/files/ENCFF300OET/@@download/ENCFF300OET.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF482TVZ bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJL, ENCFF643CGH 641977911 ENCODE Processing Pipeline 41073248ede011e50a10450553f919c0 https://www.encodeproject.org/files/ENCFF482TVZ/@@download/ENCFF482TVZ.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF688SGS bam unfiltered alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJM, ENCFF643CGH 1690044362 ENCODE Processing Pipeline 61d07dfa0a9eeb1feefbff2f93577cd7 https://www.encodeproject.org/files/ENCFF688SGS/@@download/ENCFF688SGS.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF724WMD bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJM, ENCFF643CGH 799811309 ENCODE Processing Pipeline 219032d220792e632da5ce0438665587 https://www.encodeproject.org/files/ENCFF724WMD/@@download/ENCFF724WMD.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF152ZGE bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJL, ENCFF807MUK 639718867 ENCODE Processing Pipeline 473c6f6d489b0d8ea4fcd0f2519ed30c https://www.encodeproject.org/files/ENCFF152ZGE/@@download/ENCFF152ZGE.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF029ZXM bam unfiltered alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJL, ENCFF807MUK 1098555163 ENCODE Processing Pipeline ff5bd3859865f8740fd01a9d4959eb7e https://www.encodeproject.org/files/ENCFF029ZXM/@@download/ENCFF029ZXM.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF886WVK bam unfiltered alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJM, ENCFF807MUK 1687106417 ENCODE Processing Pipeline c8995b07bf1b595612d4a278c66e6ddb https://www.encodeproject.org/files/ENCFF886WVK/@@download/ENCFF886WVK.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF450BQJ bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJM, ENCFF807MUK 792519970 ENCODE Processing Pipeline 517e2df4d90a1d19081ea1409724d33e https://www.encodeproject.org/files/ENCFF450BQJ/@@download/ENCFF450BQJ.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF160FDK bigWig signal p-value ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF724WMD, ENCFF857FLV 341653763 ENCODE Processing Pipeline 70142caffa968d51fc1eaedd1863f5f2 https://www.encodeproject.org/files/ENCFF160FDK/@@download/ENCFF160FDK.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF067OSZ bigWig signal p-value ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF482TVZ, ENCFF857FLV 304474207 ENCODE Processing Pipeline a48c9e5beb169677cf76698bbfe9fbc5 https://www.encodeproject.org/files/ENCFF067OSZ/@@download/ENCFF067OSZ.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF274RJE bigWig signal p-value ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF482TVZ, ENCFF724WMD, ENCFF857FLV 328354146 ENCODE Processing Pipeline 8dbfcce073df403b5763ccd33d808f0f https://www.encodeproject.org/files/ENCFF274RJE/@@download/ENCFF274RJE.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF823KBV bigWig fold change over control ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF724WMD, ENCFF857FLV 290615373 ENCODE Processing Pipeline 026b1b479c183b1123a5ce896f035b3d https://www.encodeproject.org/files/ENCFF823KBV/@@download/ENCFF823KBV.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF831DBJ bigWig fold change over control ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF482TVZ, ENCFF857FLV 253808352 ENCODE Processing Pipeline 4efba06194e8deb9ccb561ab76d7613d https://www.encodeproject.org/files/ENCFF831DBJ/@@download/ENCFF831DBJ.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF697BIB bigBed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285RDX 10958759 ENCODE Processing Pipeline 0404ce845a16b055b1024fa95ff48c32 https://www.encodeproject.org/files/ENCFF697BIB/@@download/ENCFF697BIB.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF998DST bigWig fold change over control ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF482TVZ, ENCFF724WMD, ENCFF857FLV 456944138 ENCODE Processing Pipeline 10ef9cfe72e15b304c4e5965f0cc7841 https://www.encodeproject.org/files/ENCFF998DST/@@download/ENCFF998DST.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF285RDX bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF724WMD, ENCFF857FLV 4761260 ENCODE Processing Pipeline d83cb80dd172c68e9d8dfde5347f0a55 https://www.encodeproject.org/files/ENCFF285RDX/@@download/ENCFF285RDX.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF578KPT bigBed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041SZY 11619523 ENCODE Processing Pipeline 29bd947b8ca33ab55aabd6103c505348 https://www.encodeproject.org/files/ENCFF578KPT/@@download/ENCFF578KPT.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF164YAR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF833PVL 1468500 ENCODE Processing Pipeline 6a93f081acf19c718b8676360f106d38 https://www.encodeproject.org/files/ENCFF164YAR/@@download/ENCFF164YAR.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF041SZY bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF482TVZ, ENCFF724WMD, ENCFF857FLV 5468699 ENCODE Processing Pipeline c8a745a9dd89deddbd99e097dc55aeae https://www.encodeproject.org/files/ENCFF041SZY/@@download/ENCFF041SZY.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF551GQH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF744AGB 1532460 ENCODE Processing Pipeline f921a341bdc3efddb1a36ce56c0d2c83 https://www.encodeproject.org/files/ENCFF551GQH/@@download/ENCFF551GQH.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF653SSF bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF482TVZ, ENCFF857FLV 4615896 ENCODE Processing Pipeline e4ab3116741aa81605cadd8f8995ddb9 https://www.encodeproject.org/files/ENCFF653SSF/@@download/ENCFF653SSF.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF958SEN bigBed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF653SSF 10722042 ENCODE Processing Pipeline 923e263a29c651cd4a7438bb12b36469 https://www.encodeproject.org/files/ENCFF958SEN/@@download/ENCFF958SEN.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF833PVL bed narrowPeak conservative idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041SZY, ENCFF285RDX, ENCFF419RSJ, ENCFF653SSF 876206 ENCODE Processing Pipeline 0ddc8e3c6f5d078f764b5e6a36d9501d https://www.encodeproject.org/files/ENCFF833PVL/@@download/ENCFF833PVL.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF744AGB bed narrowPeak optimal idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF041SZY, ENCFF285RDX, ENCFF419RSJ, ENCFF653SSF 924057 ENCODE Processing Pipeline 8bb508bd4bb040c539b1c331dd860997 https://www.encodeproject.org/files/ENCFF744AGB/@@download/ENCFF744AGB.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF313DDH bigWig signal p-value ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450BQJ, ENCFF864ASU 342166392 ENCODE Processing Pipeline 254c8fe0babd612959249a1a3e8b09c5 https://www.encodeproject.org/files/ENCFF313DDH/@@download/ENCFF313DDH.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF155ZYP bigWig fold change over control ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450BQJ, ENCFF864ASU 290817152 ENCODE Processing Pipeline e7b90c68b1cab45beea8167b5f3f9275 https://www.encodeproject.org/files/ENCFF155ZYP/@@download/ENCFF155ZYP.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF882KGC bigWig signal p-value ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF152ZGE, ENCFF864ASU 335728441 ENCODE Processing Pipeline 057439355fb37a23c515020b0822cd98 https://www.encodeproject.org/files/ENCFF882KGC/@@download/ENCFF882KGC.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF764VDW bigWig signal p-value ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF152ZGE, ENCFF450BQJ, ENCFF864ASU 330034261 ENCODE Processing Pipeline 506db3bdb09da3b848d517d28e70df56 https://www.encodeproject.org/files/ENCFF764VDW/@@download/ENCFF764VDW.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF923SXA bigWig fold change over control ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF152ZGE, ENCFF864ASU 253264797 ENCODE Processing Pipeline 71805b9e0b75146e54e752e784ed7be2 https://www.encodeproject.org/files/ENCFF923SXA/@@download/ENCFF923SXA.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF427TMP bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF152ZGE, ENCFF864ASU 4615839 ENCODE Processing Pipeline 36de372bcb08585842c4dd2c25d10e93 https://www.encodeproject.org/files/ENCFF427TMP/@@download/ENCFF427TMP.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF858VMG bigWig fold change over control ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF152ZGE, ENCFF450BQJ, ENCFF864ASU 456171299 ENCODE Processing Pipeline 9f2f34307a4b273002a15bea6cadc21d https://www.encodeproject.org/files/ENCFF858VMG/@@download/ENCFF858VMG.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF452LRM bigBed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF427TMP 10714084 ENCODE Processing Pipeline a0f2b8a9480a5220ad3a7c6732114059 https://www.encodeproject.org/files/ENCFF452LRM/@@download/ENCFF452LRM.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF718HVC bigBed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF200SPQ 10813206 ENCODE Processing Pipeline e65b5820233b60f5dd7a66595a9e6314 https://www.encodeproject.org/files/ENCFF718HVC/@@download/ENCFF718HVC.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF200SPQ bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450BQJ, ENCFF864ASU 4645128 ENCODE Processing Pipeline a29d03a40452416dadcf358281a9ed38 https://www.encodeproject.org/files/ENCFF200SPQ/@@download/ENCFF200SPQ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF461JCM bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF152ZGE, ENCFF450BQJ, ENCFF864ASU 5472332 ENCODE Processing Pipeline ca348e15e30cc892fa68f4981674ffa2 https://www.encodeproject.org/files/ENCFF461JCM/@@download/ENCFF461JCM.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF809QUJ bigBed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF461JCM 11626252 ENCODE Processing Pipeline 3ace7f9d30d67cc91709c24641b78103 https://www.encodeproject.org/files/ENCFF809QUJ/@@download/ENCFF809QUJ.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF345VRA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF672MRX 1467764 ENCODE Processing Pipeline 26e1b28d2dfd0a6eb55d2564012e9583 https://www.encodeproject.org/files/ENCFF345VRA/@@download/ENCFF345VRA.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF672MRX bed narrowPeak conservative idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF200SPQ, ENCFF427TMP, ENCFF461JCM 877155 ENCODE Processing Pipeline 4ebef62c7407df7dca8214920471aafd https://www.encodeproject.org/files/ENCFF672MRX/@@download/ENCFF672MRX.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF638FGM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF526NYA 1529188 ENCODE Processing Pipeline a6e8a4d0820d2d6f07caa04aabc11e11 https://www.encodeproject.org/files/ENCFF638FGM/@@download/ENCFF638FGM.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF526NYA bed narrowPeak optimal idr thresholded peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF200SPQ, ENCFF427TMP, ENCFF461JCM 921797 ENCODE Processing Pipeline 3849889c70e956a9bcfb72dea5ee2b35 https://www.encodeproject.org/files/ENCFF526NYA/@@download/ENCFF526NYA.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000PMG bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000PMU 1178108429 Richard Myers, HAIB ad2b9a2da3eb2a56bfe7a625e9eabb0d https://www.encodeproject.org/files/ENCFF000PMG/@@download/ENCFF000PMG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PMH bigBed broadPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UGY 228595 Richard Myers, HAIB 24c2594d7fcbd013cc1125ff1badd189 https://www.encodeproject.org/files/ENCFF000PMH/@@download/ENCFF000PMH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PMI bigBed broadPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UGZ 514585 Richard Myers, HAIB 236620988b382a5ba5864bf03546b3f3 https://www.encodeproject.org/files/ENCFF000PMI/@@download/ENCFF000PMI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PMJ bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000PMV 1392396691 Richard Myers, HAIB b084a2aa9305df61a807ada4886f3f33 https://www.encodeproject.org/files/ENCFF000PMJ/@@download/ENCFF000PMJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PML bigWig raw signal ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 19811259 Richard Myers, HAIB ffd768c22ad012fb0a942cb988b7a54a https://www.encodeproject.org/files/ENCFF000PML/@@download/ENCFF000PML.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000PMM bigWig raw signal ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 25164718 Richard Myers, HAIB 41696cc135b7f65061f10a3f53b0e284 https://www.encodeproject.org/files/ENCFF000PMM/@@download/ENCFF000PMM.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000PMU fastq reads ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1270013695 Richard Myers, HAIB a58b41a102141fd362e964b68348fb28 https://www.encodeproject.org/files/ENCFF000PMU/@@download/ENCFF000PMU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000PMV fastq reads ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1390578505 Richard Myers, HAIB c11d98927a491f30ff9954b8a3aadc3b https://www.encodeproject.org/files/ENCFF000PMV/@@download/ENCFF000PMV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POV/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001UGY bed broadPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 1 106868 Richard Myers, HAIB b50c8975f6a297e6963dac58de128238 https://www.encodeproject.org/files/ENCFF001UGY/@@download/ENCFF001UGY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF001UGZ bed broadPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 1 281869 Richard Myers, HAIB e53eb67c3ddf4b9437b8033046cc8889 https://www.encodeproject.org/files/ENCFF001UGZ/@@download/ENCFF001UGZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF002CKU bed narrowPeak optimal idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 279113 ENCODE Consortium Analysis Working Group 944de00024e32607ac280a63ed81b7c1 https://www.encodeproject.org/files/ENCFF002CKU/@@download/ENCFF002CKU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF621FYU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CKU 677763 ENCODE Consortium f12a86b8576d4a23384d82582455b0ef https://www.encodeproject.org/files/ENCFF621FYU/@@download/ENCFF621FYU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF838HCN bam unfiltered alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PMV, ENCFF643CGH 1514365322 ENCODE Processing Pipeline 4f338d0ecf96ddc0f3b30fb627a4f184 https://www.encodeproject.org/files/ENCFF838HCN/@@download/ENCFF838HCN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF701RBP bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PMV, ENCFF643CGH 796098153 ENCODE Processing Pipeline 4a5d2d65441da0b8ea6462e5417e3b2c https://www.encodeproject.org/files/ENCFF701RBP/@@download/ENCFF701RBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF821FMV bam unfiltered alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PMU, ENCFF643CGH 1535213378 ENCODE Processing Pipeline b6f14c6821f40787aba01e2e4c29d688 https://www.encodeproject.org/files/ENCFF821FMV/@@download/ENCFF821FMV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF833ZLA bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PMU, ENCFF643CGH 875151189 ENCODE Processing Pipeline f9064428cabb0d986a554e3762cc0afe https://www.encodeproject.org/files/ENCFF833ZLA/@@download/ENCFF833ZLA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF956DQX bam unfiltered alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PMV, ENCFF807MUK 1508254242 ENCODE Processing Pipeline c623861799d99482e6770f0c94743583 https://www.encodeproject.org/files/ENCFF956DQX/@@download/ENCFF956DQX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF547MVS bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PMU, ENCFF807MUK 875389378 ENCODE Processing Pipeline 1802be265a2b056999cb7e0aabb57e68 https://www.encodeproject.org/files/ENCFF547MVS/@@download/ENCFF547MVS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF940PTC bam unfiltered alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PMU, ENCFF807MUK 1531007824 ENCODE Processing Pipeline 80d2c0d95432186f900d320fa1152087 https://www.encodeproject.org/files/ENCFF940PTC/@@download/ENCFF940PTC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF966SKB bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PMV, ENCFF807MUK 796409962 ENCODE Processing Pipeline bd19d90f8c1122a3fac4e6df5bb6c4a6 https://www.encodeproject.org/files/ENCFF966SKB/@@download/ENCFF966SKB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF563UVW bigWig signal p-value ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF175NMQ, ENCFF833ZLA 534356641 ENCODE Processing Pipeline 9bf985829df1e9f7c9c6e70c2e82d49d https://www.encodeproject.org/files/ENCFF563UVW/@@download/ENCFF563UVW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF133MZD bigWig signal p-value ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF701RBP 477436815 ENCODE Processing Pipeline 0064cdeb64425ea0a84ba56a984c0689 https://www.encodeproject.org/files/ENCFF133MZD/@@download/ENCFF133MZD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF973MOX bigWig signal p-value ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF175NMQ, ENCFF701RBP, ENCFF833ZLA 574585896 ENCODE Processing Pipeline 7d15d40d823f9cec5169aef76fb2d4c0 https://www.encodeproject.org/files/ENCFF973MOX/@@download/ENCFF973MOX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF368RHF bigWig fold change over control ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF175NMQ, ENCFF833ZLA 427737094 ENCODE Processing Pipeline 11c1cea761117aba83f316c5016d0af0 https://www.encodeproject.org/files/ENCFF368RHF/@@download/ENCFF368RHF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF951NOF bigWig fold change over control ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF701RBP 398923440 ENCODE Processing Pipeline 0815ded1bcdb3202dfd4db74d7525ccd https://www.encodeproject.org/files/ENCFF951NOF/@@download/ENCFF951NOF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF352HRD bigWig fold change over control ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF175NMQ, ENCFF701RBP, ENCFF833ZLA 683562466 ENCODE Processing Pipeline 014caa8dc4aa113523d976c3aeb0171c https://www.encodeproject.org/files/ENCFF352HRD/@@download/ENCFF352HRD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF692HFF bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF175NMQ, ENCFF701RBP 4998763 ENCODE Processing Pipeline 4c120559fa9e1063507a14cf3162deeb https://www.encodeproject.org/files/ENCFF692HFF/@@download/ENCFF692HFF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF569YRX bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF175NMQ, ENCFF833ZLA 4619693 ENCODE Processing Pipeline 024cee667f1d71c2bd21f0108c0e498e https://www.encodeproject.org/files/ENCFF569YRX/@@download/ENCFF569YRX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF272WMM bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF175NMQ, ENCFF701RBP, ENCFF833ZLA 5518961 ENCODE Processing Pipeline 75aee0b4941b55cb2962313da67dc6f6 https://www.encodeproject.org/files/ENCFF272WMM/@@download/ENCFF272WMM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF026CEI bigBed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF692HFF 11058751 ENCODE Processing Pipeline a3cddf999ff4491b1b35f4e636e5b09a https://www.encodeproject.org/files/ENCFF026CEI/@@download/ENCFF026CEI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF251KPA bigBed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF569YRX 11034531 ENCODE Processing Pipeline 4bfe5b80ee44cd059ebf7059a405f6d9 https://www.encodeproject.org/files/ENCFF251KPA/@@download/ENCFF251KPA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF414UCJ bigBed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF272WMM 11428887 ENCODE Processing Pipeline d4705f6a628959521d43bf4b89f070a4 https://www.encodeproject.org/files/ENCFF414UCJ/@@download/ENCFF414UCJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF271PYC bed narrowPeak conservative idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF272WMM, ENCFF419RSJ, ENCFF569YRX, ENCFF692HFF 211140 ENCODE Processing Pipeline 970a5042a7c5b8f859f9e54b815cb013 https://www.encodeproject.org/files/ENCFF271PYC/@@download/ENCFF271PYC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF237RQQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF271PYC 458881 ENCODE Processing Pipeline 96e87e046935b1d51f1eb05df99a6fae https://www.encodeproject.org/files/ENCFF237RQQ/@@download/ENCFF237RQQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF592BGO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF669XCW 580214 ENCODE Processing Pipeline a5a532015a61428deec49ea313070cf9 https://www.encodeproject.org/files/ENCFF592BGO/@@download/ENCFF592BGO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF669XCW bed narrowPeak optimal idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF272WMM, ENCFF419RSJ, ENCFF569YRX, ENCFF692HFF 294770 ENCODE Processing Pipeline d6a67def37af3f120b62de5a633ffead https://www.encodeproject.org/files/ENCFF669XCW/@@download/ENCFF669XCW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF359CXY bigBed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF172OLJ 11053376 ENCODE Processing Pipeline bccdd2db7ffa7328be5a8c6eae3e7edd https://www.encodeproject.org/files/ENCFF359CXY/@@download/ENCFF359CXY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF075WWV bigBed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF658GRO 11416815 ENCODE Processing Pipeline dd805d7ca0a118e3829716688c269a7e https://www.encodeproject.org/files/ENCFF075WWV/@@download/ENCFF075WWV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF543QRY bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF547MVS 4619504 ENCODE Processing Pipeline 67f14e74605a970c000141095c24671f https://www.encodeproject.org/files/ENCFF543QRY/@@download/ENCFF543QRY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF172OLJ bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF966SKB 4995784 ENCODE Processing Pipeline 5c2db728b75c6df49b6e5c60823ab5d2 https://www.encodeproject.org/files/ENCFF172OLJ/@@download/ENCFF172OLJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF562LGW bigWig fold change over control ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF547MVS 428786555 ENCODE Processing Pipeline 17d1f4ca17c2d4f8c2353f216129be7a https://www.encodeproject.org/files/ENCFF562LGW/@@download/ENCFF562LGW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF119RSW bigWig signal p-value ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF547MVS 424448001 ENCODE Processing Pipeline 39773034f2674fdae4a8b9e97d06729b https://www.encodeproject.org/files/ENCFF119RSW/@@download/ENCFF119RSW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF878SAC bigWig signal p-value ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF966SKB 553339516 ENCODE Processing Pipeline 128e0fa32004c04033c5917d83b7f85d https://www.encodeproject.org/files/ENCFF878SAC/@@download/ENCFF878SAC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF402XWP bigWig fold change over control ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF966SKB 399212303 ENCODE Processing Pipeline 3e6e305fdba16bc33ccae50debb9a678 https://www.encodeproject.org/files/ENCFF402XWP/@@download/ENCFF402XWP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF867TQI bigBed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF543QRY 11028760 ENCODE Processing Pipeline 69ffaab848569c8f9732bf6feb3dda8b https://www.encodeproject.org/files/ENCFF867TQI/@@download/ENCFF867TQI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF942XHO bigWig signal p-value ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF382BNF, ENCFF547MVS, ENCFF966SKB 574187688 ENCODE Processing Pipeline fe75e6654f48565101295d94c85a94d8 https://www.encodeproject.org/files/ENCFF942XHO/@@download/ENCFF942XHO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF337YKQ bigWig fold change over control ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF382BNF, ENCFF547MVS, ENCFF966SKB 684898323 ENCODE Processing Pipeline 76b28a251b1400d9f8ee913349213fed https://www.encodeproject.org/files/ENCFF337YKQ/@@download/ENCFF337YKQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF854KPC bed narrowPeak optimal idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF172OLJ, ENCFF543QRY, ENCFF658GRO 286172 ENCODE Processing Pipeline d364c2fca920aaecc8c604ba03c2b902 https://www.encodeproject.org/files/ENCFF854KPC/@@download/ENCFF854KPC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF658GRO bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF382BNF, ENCFF547MVS, ENCFF966SKB 5514353 ENCODE Processing Pipeline 12ce171d3f9f18a311b031994380bd5a https://www.encodeproject.org/files/ENCFF658GRO/@@download/ENCFF658GRO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF820AFP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF618IBW 451840 ENCODE Processing Pipeline a1f70bca9fcc5d8170985608fc1d9b82 https://www.encodeproject.org/files/ENCFF820AFP/@@download/ENCFF820AFP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF319CBV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF854KPC 566898 ENCODE Processing Pipeline cdfa2206ab9fc32ba5114960e1d54118 https://www.encodeproject.org/files/ENCFF319CBV/@@download/ENCFF319CBV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF618IBW bed narrowPeak conservative idr thresholded peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF172OLJ, ENCFF543QRY, ENCFF658GRO 207058 ENCODE Processing Pipeline 09fbc1a72bbde6103106b947d586e3f2 https://www.encodeproject.org/files/ENCFF618IBW/@@download/ENCFF618IBW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000ZLI bam alignments ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZLK 514245960 Peggy Farnham, USC c07c62deb7aa2557f64f712ce5726626 https://www.encodeproject.org/files/ENCFF000ZLI/@@download/ENCFF000ZLI.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZLJ bigBed narrowPeak peaks ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQI 920345 Peggy Farnham, USC f3128893f8b456e074939b6f8fa93f38 https://www.encodeproject.org/files/ENCFF000ZLJ/@@download/ENCFF000ZLJ.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZLK fastq reads ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 960892702 Peggy Farnham, USC 0531befce7050903dd57af412ee46e54 https://www.encodeproject.org/files/ENCFF000ZLK/@@download/ENCFF000ZLK.fastq.gz Illumina Genome Analyzer II /files/ENCFF000VHL/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZLM fastq reads ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1018711941 Peggy Farnham, USC 853025a61fa57ce8e827e18250b0eb09 https://www.encodeproject.org/files/ENCFF000ZLM/@@download/ENCFF000ZLM.fastq.gz Illumina Genome Analyzer II /files/ENCFF000VHM/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZLO bigWig signal ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 393498394 Peggy Farnham, USC 79ea4f064f73bd3d65dd1b459a7b4f88 https://www.encodeproject.org/files/ENCFF000ZLO/@@download/ENCFF000ZLO.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000ZLP bam alignments ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZLM 578272912 Peggy Farnham, USC 2f286f4746ad0f0587df09e3d3a857bb https://www.encodeproject.org/files/ENCFF000ZLP/@@download/ENCFF000ZLP.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001VQI bed narrowPeak peaks ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 360354 Peggy Farnham, USC b880c65186203c229b71c0139f69a70e https://www.encodeproject.org/files/ENCFF001VQI/@@download/ENCFF001VQI.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CZM bed narrowPeak optimal idr thresholded peaks ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 263955 ENCODE Consortium Analysis Working Group 79a1ee48bf1fd09b432fe6f730783b9d https://www.encodeproject.org/files/ENCFF002CZM/@@download/ENCFF002CZM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF926HOS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZM 758506 ENCODE Consortium 5fcd44dbe7ccf060da5fa12a52e20b00 https://www.encodeproject.org/files/ENCFF926HOS/@@download/ENCFF926HOS.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF918GXQ bam unfiltered alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELP, ENCFF002ELQ, ENCFF807MUK 7442626358 ENCODE Processing Pipeline 3513297c9cddac1650814c579acef640 https://www.encodeproject.org/files/ENCFF918GXQ/@@download/ENCFF918GXQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELI fastq reads ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002ELR 3136894834 Michael Snyder, Stanford 08fd6afc2baaaa6299ec7ad24446add6 https://www.encodeproject.org/files/ENCFF002ELI/@@download/ENCFF002ELI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELP fastq reads ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002ELQ 3885492470 Michael Snyder, Stanford cadf555b9bde1c4fc1746600c468d576 https://www.encodeproject.org/files/ENCFF002ELP/@@download/ENCFF002ELP.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELQ fastq reads ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002ELP 3809173840 Michael Snyder, Stanford d08b0cbc14ede149617b266158daafa0 https://www.encodeproject.org/files/ENCFF002ELQ/@@download/ENCFF002ELQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002ELR fastq reads ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002ELI 3201020895 Michael Snyder, Stanford 346ec1535753974442f6d7138da49e1f https://www.encodeproject.org/files/ENCFF002ELR/@@download/ENCFF002ELR.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF264XSG bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF002ELP, ENCFF002ELQ, ENCFF807MUK 3930040706 ENCODE Processing Pipeline 2a7e1e0d8c16917c0d7ace3adb192caa https://www.encodeproject.org/files/ENCFF264XSG/@@download/ENCFF264XSG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF723QGN fastq reads ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 2 ENCFF236RPE 2692837267 Michael Snyder, Stanford 1dda45adf61bbd8fa9793e20a5cc0364 https://www.encodeproject.org/files/ENCFF723QGN/@@download/ENCFF723QGN.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF236RPE fastq reads ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 1 ENCFF723QGN 2694261130 Michael Snyder, Stanford fb384e33f6208cb232fdc0e4c378ebf3 https://www.encodeproject.org/files/ENCFF236RPE/@@download/ENCFF236RPE.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF273BTW bam unfiltered alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELI, ENCFF002ELR, ENCFF236RPE, ENCFF723QGN, ENCFF807MUK 10464189520 ENCODE Processing Pipeline f9f8c53eefb3b4ca8a6e21ee18e1cd10 https://www.encodeproject.org/files/ENCFF273BTW/@@download/ENCFF273BTW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF157QUV bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELP, ENCFF002ELQ, ENCFF643CGH 3933136776 ENCODE Processing Pipeline cdaca042f6bef7556dd2c81e8d766e1f https://www.encodeproject.org/files/ENCFF157QUV/@@download/ENCFF157QUV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF372ENP bam unfiltered alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELP, ENCFF002ELQ, ENCFF643CGH 7440902907 ENCODE Processing Pipeline 20dd50bb9bd50cabdfa193f9819ae015 https://www.encodeproject.org/files/ENCFF372ENP/@@download/ENCFF372ENP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF366QZU bam unfiltered alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELI, ENCFF002ELR, ENCFF236RPE, ENCFF643CGH, ENCFF723QGN 10456129520 ENCODE Processing Pipeline 939e1bcda1660c09f47355a15f53066e https://www.encodeproject.org/files/ENCFF366QZU/@@download/ENCFF366QZU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF034UVX bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELI, ENCFF002ELR, ENCFF236RPE, ENCFF643CGH, ENCFF723QGN 4947191843 ENCODE Processing Pipeline 18153f406899572020af0509e710ae5d https://www.encodeproject.org/files/ENCFF034UVX/@@download/ENCFF034UVX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF204KUW bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELI, ENCFF002ELR, ENCFF236RPE, ENCFF723QGN, ENCFF807MUK 4943493491 ENCODE Processing Pipeline 832b5466373efd5d3c72ecdc1260a7ce https://www.encodeproject.org/files/ENCFF204KUW/@@download/ENCFF204KUW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF517GYS bigWig fold change over control ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF204KUW, ENCFF980CFV 1768036322 ENCODE Processing Pipeline 8a5f3c5fbb8c58ff53cc08c46638b1ed https://www.encodeproject.org/files/ENCFF517GYS/@@download/ENCFF517GYS.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF644YCV bigWig signal p-value ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF204KUW, ENCFF264XSG, ENCFF980CFV 2118543114 ENCODE Processing Pipeline 4d960d6e1058b8e14dda647354cdf8f3 https://www.encodeproject.org/files/ENCFF644YCV/@@download/ENCFF644YCV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF427OSB bigWig fold change over control ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF264XSG, ENCFF980CFV 1637567759 ENCODE Processing Pipeline 587ca12b199b2a426bd155c477c13e88 https://www.encodeproject.org/files/ENCFF427OSB/@@download/ENCFF427OSB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF114UVX bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF204KUW, ENCFF980CFV 6893043 ENCODE Processing Pipeline c568990afad79c1d261d67889408c4f8 https://www.encodeproject.org/files/ENCFF114UVX/@@download/ENCFF114UVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF777EIJ bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF204KUW, ENCFF264XSG, ENCFF980CFV 7152599 ENCODE Processing Pipeline 0c58c3096dc3942bca4b560b315564fd https://www.encodeproject.org/files/ENCFF777EIJ/@@download/ENCFF777EIJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF956XBN bigWig signal p-value ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF204KUW, ENCFF980CFV 1651888126 ENCODE Processing Pipeline 73cc3343f90685f4c34dab76a6c5d92b https://www.encodeproject.org/files/ENCFF956XBN/@@download/ENCFF956XBN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF376LEU bigWig signal p-value ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF264XSG, ENCFF980CFV 1644722163 ENCODE Processing Pipeline 91cc318d2fa0ca0fb661c13704bef199 https://www.encodeproject.org/files/ENCFF376LEU/@@download/ENCFF376LEU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF068YGC bigWig fold change over control ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF204KUW, ENCFF264XSG, ENCFF980CFV 2249092779 ENCODE Processing Pipeline 47f3cd2c40e1e7365c6e34890c4a2e42 https://www.encodeproject.org/files/ENCFF068YGC/@@download/ENCFF068YGC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF888JDR bed narrowPeak optimal idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF114UVX, ENCFF287VNA, ENCFF777EIJ 829546 ENCODE Processing Pipeline c2b6e7c7a961f98ca60edd5977ebb6dc https://www.encodeproject.org/files/ENCFF888JDR/@@download/ENCFF888JDR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF184JSJ bigBed narrowPeak optimal idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF888JDR 1679897 ENCODE Processing Pipeline b320de008a29cb2c0fc41da996716327 https://www.encodeproject.org/files/ENCFF184JSJ/@@download/ENCFF184JSJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF904KEC bigBed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF287VNA 13607985 ENCODE Processing Pipeline 5972ea45ff1f195007c4600cb0e149eb https://www.encodeproject.org/files/ENCFF904KEC/@@download/ENCFF904KEC.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF287VNA bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF264XSG, ENCFF980CFV 7020721 ENCODE Processing Pipeline efb9eeb34e0c180410461026285e9db1 https://www.encodeproject.org/files/ENCFF287VNA/@@download/ENCFF287VNA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF277GGK bigBed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF114UVX 13601944 ENCODE Processing Pipeline 8bc8b8b631e61ad0364bbf1725a293b9 https://www.encodeproject.org/files/ENCFF277GGK/@@download/ENCFF277GGK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF197PRN bigBed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF777EIJ 13569701 ENCODE Processing Pipeline e0e23095bcd277ad01bd6fb9768af775 https://www.encodeproject.org/files/ENCFF197PRN/@@download/ENCFF197PRN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF641ZLQ bigBed narrowPeak conservative idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF583XQL 1660203 ENCODE Processing Pipeline edb85b40f65e0df61a19d026384e5858 https://www.encodeproject.org/files/ENCFF641ZLQ/@@download/ENCFF641ZLQ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF583XQL bed narrowPeak conservative idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF114UVX, ENCFF287VNA, ENCFF777EIJ 820983 ENCODE Processing Pipeline a44d757525d0976d48913c3706a34479 https://www.encodeproject.org/files/ENCFF583XQL/@@download/ENCFF583XQL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF522APX bigWig fold change over control ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF034UVX, ENCFF056HWK, ENCFF396QTX 1756743998 ENCODE Processing Pipeline bb96e5e2387ff35933687b1b876f10c9 https://www.encodeproject.org/files/ENCFF522APX/@@download/ENCFF522APX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF679YOU bigWig signal p-value ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF157QUV, ENCFF396QTX 1781410147 ENCODE Processing Pipeline 78fd1c31adc32f1e8f8189d35db03bb8 https://www.encodeproject.org/files/ENCFF679YOU/@@download/ENCFF679YOU.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF031BAM bigWig signal p-value ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF034UVX, ENCFF056HWK, ENCFF157QUV, ENCFF396QTX 1865309786 ENCODE Processing Pipeline c057f34b01d6a07cf5b606cd9cba81ee https://www.encodeproject.org/files/ENCFF031BAM/@@download/ENCFF031BAM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF829QTA bigWig fold change over control ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF157QUV, ENCFF396QTX 1631517241 ENCODE Processing Pipeline 47b09c7d99dc4d590868685505f3a5b7 https://www.encodeproject.org/files/ENCFF829QTA/@@download/ENCFF829QTA.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF546ZYM bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF034UVX, ENCFF056HWK, ENCFF396QTX 6916031 ENCODE Processing Pipeline b1f4c671f849c4614af10bb4194de28e https://www.encodeproject.org/files/ENCFF546ZYM/@@download/ENCFF546ZYM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF708WKU bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF157QUV, ENCFF396QTX 6872734 ENCODE Processing Pipeline 19f19fcbf6eda1132b327418cbd9c214 https://www.encodeproject.org/files/ENCFF708WKU/@@download/ENCFF708WKU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF154ISP bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF034UVX, ENCFF056HWK, ENCFF157QUV, ENCFF396QTX 7121366 ENCODE Processing Pipeline 6d481dd284d338acbe979a92d632018f https://www.encodeproject.org/files/ENCFF154ISP/@@download/ENCFF154ISP.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF481SCR bigBed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF546ZYM 13639489 ENCODE Processing Pipeline d87c9528f670b3bae46bd85a2feb19c0 https://www.encodeproject.org/files/ENCFF481SCR/@@download/ENCFF481SCR.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF524XRG bigWig signal p-value ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF034UVX, ENCFF056HWK, ENCFF396QTX 1916805312 ENCODE Processing Pipeline 4e95ea955022461427c59206fa64e630 https://www.encodeproject.org/files/ENCFF524XRG/@@download/ENCFF524XRG.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF616DFJ bigWig fold change over control ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF034UVX, ENCFF056HWK, ENCFF157QUV, ENCFF396QTX 2252443493 ENCODE Processing Pipeline 0b560cd995e750acaef70a3e3fb129da https://www.encodeproject.org/files/ENCFF616DFJ/@@download/ENCFF616DFJ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF021ETI bigBed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF708WKU 13435645 ENCODE Processing Pipeline 577dfd4ef1e1a343b70477e199537fe0 https://www.encodeproject.org/files/ENCFF021ETI/@@download/ENCFF021ETI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF770OGW bigBed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF154ISP 13538411 ENCODE Processing Pipeline 026f4fb2b7c78f3698585316a35ab361 https://www.encodeproject.org/files/ENCFF770OGW/@@download/ENCFF770OGW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF747GDL bed narrowPeak conservative idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF154ISP, ENCFF419RSJ, ENCFF546ZYM, ENCFF708WKU 810830 ENCODE Processing Pipeline cea9ae6fce4cca20b4b9776a3ae1b659 https://www.encodeproject.org/files/ENCFF747GDL/@@download/ENCFF747GDL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF133NID bigBed narrowPeak conservative idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF747GDL 1643075 ENCODE Processing Pipeline 753fca4dfe02a44a1c1de2c2515c6532 https://www.encodeproject.org/files/ENCFF133NID/@@download/ENCFF133NID.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF459ARL bed narrowPeak optimal idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF154ISP, ENCFF419RSJ, ENCFF546ZYM, ENCFF708WKU 808927 ENCODE Processing Pipeline baba6dfb26f98eb442fccc7181122eef https://www.encodeproject.org/files/ENCFF459ARL/@@download/ENCFF459ARL.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF338QNY bigBed narrowPeak optimal idr thresholded peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF459ARL 1649087 ENCODE Processing Pipeline 91ce9e41d8d982502f774e5cd872b814 https://www.encodeproject.org/files/ENCFF338QNY/@@download/ENCFF338QNY.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000QHX bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QII 784196004 Richard Myers, HAIB 8ee1e1089b166eee4c4caa9f4f2ee801 https://www.encodeproject.org/files/ENCFF000QHX/@@download/ENCFF000QHX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QHY bigBed broadPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001ULP 102111 Richard Myers, HAIB fe840ff59e043f1a7136befb624d9596 https://www.encodeproject.org/files/ENCFF000QHY/@@download/ENCFF000QHY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QHZ bigBed broadPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULQ 126693 Richard Myers, HAIB 623faee356465efa0c9a80cc5b60f4f7 https://www.encodeproject.org/files/ENCFF000QHZ/@@download/ENCFF000QHZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIA bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QIM 985093791 Richard Myers, HAIB fd2ca68e20ea886131dee15b5b154ac8 https://www.encodeproject.org/files/ENCFF000QIA/@@download/ENCFF000QIA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIC bigWig raw signal ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 3764647 Richard Myers, HAIB f10540de9bb61889ffb457609cc96272 https://www.encodeproject.org/files/ENCFF000QIC/@@download/ENCFF000QIC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QIE bigWig raw signal ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 8907374 Richard Myers, HAIB 74a0b6c12cd8d7e56d20f12233dc999f https://www.encodeproject.org/files/ENCFF000QIE/@@download/ENCFF000QIE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000QII fastq reads ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 657079315 Richard Myers, HAIB f0a12c56bcae296ba13d617ff6c3f57f https://www.encodeproject.org/files/ENCFF000QII/@@download/ENCFF000QII.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QIM fastq reads ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 926068600 Richard Myers, HAIB eec490d05f0fa4be5e79023129b8d259 https://www.encodeproject.org/files/ENCFF000QIM/@@download/ENCFF000QIM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001ULP bed broadPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 1 35779 Richard Myers, HAIB 0ac5cef0b3bc1b0497ea21e7eb8da507 https://www.encodeproject.org/files/ENCFF001ULP/@@download/ENCFF001ULP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001ULQ bed broadPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 1 40467 Richard Myers, HAIB f79b1ab3b2c7b388a852daf0bac68a81 https://www.encodeproject.org/files/ENCFF001ULQ/@@download/ENCFF001ULQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF002CMS bed narrowPeak optimal idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 69164 ENCODE Consortium Analysis Working Group 063d398298f51274e96c4d9e0cb76741 https://www.encodeproject.org/files/ENCFF002CMS/@@download/ENCFF002CMS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF006OCC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMS 198350 ENCODE Consortium 6c6069949d1fd30f5fc9130f97042545 https://www.encodeproject.org/files/ENCFF006OCC/@@download/ENCFF006OCC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF684LYI bam unfiltered alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QII, ENCFF643CGH 925082323 ENCODE Processing Pipeline b6a62fbb9d2956754e7d4b35a4cd0296 https://www.encodeproject.org/files/ENCFF684LYI/@@download/ENCFF684LYI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF518PIS bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QII, ENCFF643CGH 545582575 ENCODE Processing Pipeline 2d134746c5a0b5a77cf3d00ba3817c07 https://www.encodeproject.org/files/ENCFF518PIS/@@download/ENCFF518PIS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF940IQI bam unfiltered alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIM, ENCFF643CGH 1177649527 ENCODE Processing Pipeline 57e73a00cab1e00a6dc014e4cbe6cd4c https://www.encodeproject.org/files/ENCFF940IQI/@@download/ENCFF940IQI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF126SXE bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIM, ENCFF643CGH 629717843 ENCODE Processing Pipeline 8edbd9669942b239360d400c23a0cdc8 https://www.encodeproject.org/files/ENCFF126SXE/@@download/ENCFF126SXE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF527PHQ bam unfiltered alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QII, ENCFF807MUK 921657949 ENCODE Processing Pipeline f7a9c1a72685c60f5ca0530b26c78aa0 https://www.encodeproject.org/files/ENCFF527PHQ/@@download/ENCFF527PHQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF335FQW bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QII, ENCFF807MUK 545875538 ENCODE Processing Pipeline 55dc39b0bbcbe3470fd74f804c0d4ebf https://www.encodeproject.org/files/ENCFF335FQW/@@download/ENCFF335FQW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF453XQE bam unfiltered alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIM, ENCFF807MUK 1175076985 ENCODE Processing Pipeline c72383f26011dab6e654a878e91cf0f1 https://www.encodeproject.org/files/ENCFF453XQE/@@download/ENCFF453XQE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF085YNW bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIM, ENCFF807MUK 630052343 ENCODE Processing Pipeline f06dd42b3dc1e5eaf00ca6d758a40b06 https://www.encodeproject.org/files/ENCFF085YNW/@@download/ENCFF085YNW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF608BKQ bigWig signal p-value ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF518PIS, ENCFF772PJM 200157997 ENCODE Processing Pipeline ced1cfbbf233eedcd68ce68267a54dbb https://www.encodeproject.org/files/ENCFF608BKQ/@@download/ENCFF608BKQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF162CVB bigWig signal p-value ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF126SXE, ENCFF772PJM 209509737 ENCODE Processing Pipeline 5fc8930b89d0c3b839a7dbaa2f0d1d74 https://www.encodeproject.org/files/ENCFF162CVB/@@download/ENCFF162CVB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF160QUN bigWig signal p-value ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF126SXE, ENCFF518PIS, ENCFF772PJM 182168595 ENCODE Processing Pipeline 6f1252f25be6bbb581074273629962f5 https://www.encodeproject.org/files/ENCFF160QUN/@@download/ENCFF160QUN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF355WZJ bigWig fold change over control ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF518PIS, ENCFF772PJM 205610490 ENCODE Processing Pipeline 5eb20d1eee0d03a4098b2698e27dac05 https://www.encodeproject.org/files/ENCFF355WZJ/@@download/ENCFF355WZJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF495MIW bigWig fold change over control ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF126SXE, ENCFF772PJM 227130040 ENCODE Processing Pipeline f14f090a030bf8efcaf013913752a917 https://www.encodeproject.org/files/ENCFF495MIW/@@download/ENCFF495MIW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF665COJ bigWig fold change over control ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF126SXE, ENCFF518PIS, ENCFF772PJM 387352882 ENCODE Processing Pipeline c2c86ab59e43296e9027ff6fd11f2b17 https://www.encodeproject.org/files/ENCFF665COJ/@@download/ENCFF665COJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF885BXV bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF518PIS, ENCFF772PJM 94123 ENCODE Processing Pipeline a6e58c04c994e4fa23083b2996b36cf5 https://www.encodeproject.org/files/ENCFF885BXV/@@download/ENCFF885BXV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF020JUH bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF126SXE, ENCFF518PIS, ENCFF772PJM 4746793 ENCODE Processing Pipeline dab4aba425eb3588b6db87887ad52b48 https://www.encodeproject.org/files/ENCFF020JUH/@@download/ENCFF020JUH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF824FNL bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF126SXE, ENCFF772PJM 197835 ENCODE Processing Pipeline 434c8469eefddfabcf849756288c9859 https://www.encodeproject.org/files/ENCFF824FNL/@@download/ENCFF824FNL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF869EMY bigBed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF885BXV 271249 ENCODE Processing Pipeline 2f901584cdc688c9379a9bb9d906d548 https://www.encodeproject.org/files/ENCFF869EMY/@@download/ENCFF869EMY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF495GWA bigBed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF020JUH 10704572 ENCODE Processing Pipeline a726e01de63cb232f92337ad81615f1d https://www.encodeproject.org/files/ENCFF495GWA/@@download/ENCFF495GWA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF270QLC bed narrowPeak conservative idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF020JUH, ENCFF419RSJ, ENCFF824FNL, ENCFF885BXV 7565 ENCODE Processing Pipeline 3bd5df735547bfb68148701d63779b78 https://www.encodeproject.org/files/ENCFF270QLC/@@download/ENCFF270QLC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF155JWI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF270QLC 57570 ENCODE Processing Pipeline ecc52310b5a4af1b634db4134b344a7c https://www.encodeproject.org/files/ENCFF155JWI/@@download/ENCFF155JWI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF852NOL bed narrowPeak optimal idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF020JUH, ENCFF419RSJ, ENCFF824FNL, ENCFF885BXV 12435 ENCODE Processing Pipeline 5cf6d1f9a14bbdcedf73fff57d04e6fe https://www.encodeproject.org/files/ENCFF852NOL/@@download/ENCFF852NOL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF252SVP bigBed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF824FNL 494540 ENCODE Processing Pipeline 173506162bdbb842eaaf9157356a24c5 https://www.encodeproject.org/files/ENCFF252SVP/@@download/ENCFF252SVP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF555GQK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF852NOL 65157 ENCODE Processing Pipeline d271b36be8da9b345b132d21d90f34ef https://www.encodeproject.org/files/ENCFF555GQK/@@download/ENCFF555GQK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF234UNT bigWig fold change over control ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF335FQW, ENCFF750MIM 205299223 ENCODE Processing Pipeline 5d539bfc8492d5a98dd1d1c946c25955 https://www.encodeproject.org/files/ENCFF234UNT/@@download/ENCFF234UNT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF909VNF bigWig signal p-value ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF335FQW, ENCFF750MIM 200336354 ENCODE Processing Pipeline 719689b92ff0896f2efb153f5ce3b223 https://www.encodeproject.org/files/ENCFF909VNF/@@download/ENCFF909VNF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF733ZWY bigWig signal p-value ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF085YNW, ENCFF750MIM 209692321 ENCODE Processing Pipeline 8d7b6cea72f4da348d7e2fb608ba5a33 https://www.encodeproject.org/files/ENCFF733ZWY/@@download/ENCFF733ZWY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF791YIP bigWig signal p-value ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF085YNW, ENCFF335FQW, ENCFF750MIM 182120637 ENCODE Processing Pipeline d5e22f67dddc43f5394705f9265f831d https://www.encodeproject.org/files/ENCFF791YIP/@@download/ENCFF791YIP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF495ETG bigWig fold change over control ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF085YNW, ENCFF335FQW, ENCFF750MIM 386872996 ENCODE Processing Pipeline d5e1c7ae8c4e65d22f2315d0509c306d https://www.encodeproject.org/files/ENCFF495ETG/@@download/ENCFF495ETG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF070BNL bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF335FQW, ENCFF750MIM 96930 ENCODE Processing Pipeline 85c6f61e40a3843197f460a194cf9805 https://www.encodeproject.org/files/ENCFF070BNL/@@download/ENCFF070BNL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF443YEH bigBed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF611EGN 496423 ENCODE Processing Pipeline 8ba6bc5f7d602290da3b220b012e0906 https://www.encodeproject.org/files/ENCFF443YEH/@@download/ENCFF443YEH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF473YPC bigWig fold change over control ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF085YNW, ENCFF750MIM 228789166 ENCODE Processing Pipeline 18b0f50ac2797870e6408646c8941741 https://www.encodeproject.org/files/ENCFF473YPC/@@download/ENCFF473YPC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF611EGN bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF085YNW, ENCFF750MIM 199621 ENCODE Processing Pipeline 1185acb76f195bd1bc72cceeba189253 https://www.encodeproject.org/files/ENCFF611EGN/@@download/ENCFF611EGN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF271GZS bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF085YNW, ENCFF335FQW, ENCFF750MIM 4757767 ENCODE Processing Pipeline acaa0efc85fefc9cb1fab6f3fbe41280 https://www.encodeproject.org/files/ENCFF271GZS/@@download/ENCFF271GZS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF959PXZ bigBed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF070BNL 274638 ENCODE Processing Pipeline fd21cecd9cd385374b8d6961ee1390ac https://www.encodeproject.org/files/ENCFF959PXZ/@@download/ENCFF959PXZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF860QFA bigBed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271GZS 10704410 ENCODE Processing Pipeline 450351a0be6adde29f9b43fdb5417132 https://www.encodeproject.org/files/ENCFF860QFA/@@download/ENCFF860QFA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF700YSH bed narrowPeak conservative idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF070BNL, ENCFF271GZS, ENCFF611EGN 7061 ENCODE Processing Pipeline 838fd92d2d5ebbaf51e719b0d45567da https://www.encodeproject.org/files/ENCFF700YSH/@@download/ENCFF700YSH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF034CQR bed narrowPeak optimal idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF070BNL, ENCFF271GZS, ENCFF611EGN 11755 ENCODE Processing Pipeline 7a373886ebf5e3085fc3dd43d0d662da https://www.encodeproject.org/files/ENCFF034CQR/@@download/ENCFF034CQR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF594JTT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF034CQR 63711 ENCODE Processing Pipeline b2bc8b45e40f45baa9a01791adeb68d0 https://www.encodeproject.org/files/ENCFF594JTT/@@download/ENCFF594JTT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF211EWN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF700YSH 56070 ENCODE Processing Pipeline 7eee09eeeaa90d1d3734251f56e26026 https://www.encodeproject.org/files/ENCFF211EWN/@@download/ENCFF211EWN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000ZTZ bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 606130324 Kevin White, UChicago 6f243fbd58506bed4cf0185a84f0933e https://www.encodeproject.org/files/ENCFF000ZTZ/@@download/ENCFF000ZTZ.bam hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZUA bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE ENCFF001VRJ 611951 Kevin White, UChicago 687d36d49d1b4bcb1493933f7abaaf4f https://www.encodeproject.org/files/ENCFF000ZUA/@@download/ENCFF000ZUA.bigBed hg19 archived low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000ZUC bigWig signal ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 293130605 Kevin White, UChicago a298f8d34d5191a653429549830151b5 https://www.encodeproject.org/files/ENCFF000ZUC/@@download/ENCFF000ZUC.bigWig hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZUF bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 878307066 Kevin White, UChicago 9eaeb7e0814f2e5a405a6df055824568 https://www.encodeproject.org/files/ENCFF000ZUF/@@download/ENCFF000ZUF.bam hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF000ZUL fastq reads ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 1 36 single-ended 772077224 Kevin White, UChicago a422ee47472046be2183e17d4c7b9fee https://www.encodeproject.org/files/ENCFF000ZUL/@@download/ENCFF000ZUL.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ZVJ/ released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000ZUS fastq reads ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 1 36 single-ended 1097844622 Kevin White, UChicago 7ee1eaab3923f127a43296906a2447d8 https://www.encodeproject.org/files/ENCFF000ZUS/@@download/ENCFF000ZUS.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ZVV/ released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF001VRJ bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 265852 Kevin White, UChicago 5f54a00f490be9bd92213e0295408d81 https://www.encodeproject.org/files/ENCFF001VRJ/@@download/ENCFF001VRJ.bed.gz hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF002DDX bed narrowPeak optimal idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 33793 ENCODE Consortium Analysis Working Group d1487abda2136e261aadb10bdf04addd https://www.encodeproject.org/files/ENCFF002DDX/@@download/ENCFF002DDX.bed.gz hg19 archived low read length, low read depth, missing genetic modification characterization missing derived_from insufficient replicate concordance ENCFF409ULZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE ENCFF002DDX 118162 ENCODE Consortium e47890cd76a460780e3cfdc0724bd68f https://www.encodeproject.org/files/ENCFF409ULZ/@@download/ENCFF409ULZ.bigBed hg19 archived low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF786TLS bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUL, ENCFF643CGH 668797753 ENCODE Processing Pipeline 59e9590f44893904b749834668d47077 https://www.encodeproject.org/files/ENCFF786TLS/@@download/ENCFF786TLS.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF158DVM bam unfiltered alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUS, ENCFF643CGH 1349093690 ENCODE Processing Pipeline d55f062ebd7eae79f4d18bb337074ddf https://www.encodeproject.org/files/ENCFF158DVM/@@download/ENCFF158DVM.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF063FBY bam unfiltered alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUL, ENCFF643CGH 948938296 ENCODE Processing Pipeline 65a7d272eb30f14732eb0e4b5fac58ba https://www.encodeproject.org/files/ENCFF063FBY/@@download/ENCFF063FBY.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF771CUF bam unfiltered alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUS, ENCFF807MUK 1341708766 ENCODE Processing Pipeline 7e195475134230d4ee1aea89544a43ce https://www.encodeproject.org/files/ENCFF771CUF/@@download/ENCFF771CUF.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF659KOL bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUS, ENCFF643CGH 889464201 ENCODE Processing Pipeline 4e847c49f7ee33eab8f5518ca61b5935 https://www.encodeproject.org/files/ENCFF659KOL/@@download/ENCFF659KOL.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF788FFM bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUS, ENCFF807MUK 889972035 ENCODE Processing Pipeline 4b1afb41f7633c8f3e5d0d01d25e4e4b https://www.encodeproject.org/files/ENCFF788FFM/@@download/ENCFF788FFM.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF460CUT bam unfiltered alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUL, ENCFF807MUK 945499531 ENCODE Processing Pipeline fee98b02ab38c3cad691f5ab456c3fb6 https://www.encodeproject.org/files/ENCFF460CUT/@@download/ENCFF460CUT.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF721IXJ bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUL, ENCFF807MUK 669142178 ENCODE Processing Pipeline fa0184847e3a6b044d518a2d9c626f92 https://www.encodeproject.org/files/ENCFF721IXJ/@@download/ENCFF721IXJ.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF660TQQ bigWig signal p-value ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ 592547714 ENCODE Processing Pipeline b428fdca87b96c6051d4e3d9dc20be78 https://www.encodeproject.org/files/ENCFF660TQQ/@@download/ENCFF660TQQ.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF904IIG bigWig signal p-value ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF138FPL, ENCFF647LGE, ENCFF788FFM 622395664 ENCODE Processing Pipeline c764d3db9f37feffb3306522317ed353 https://www.encodeproject.org/files/ENCFF904IIG/@@download/ENCFF904IIG.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF502EMU bigWig signal p-value ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF240RBJ, ENCFF659KOL, ENCFF683DQU 730167340 ENCODE Processing Pipeline 01cbee40c3c85a8fdf6726c7cf060554 https://www.encodeproject.org/files/ENCFF502EMU/@@download/ENCFF502EMU.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF009RUR bigWig signal p-value ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF240RBJ, ENCFF683DQU, ENCFF786TLS 614304860 ENCODE Processing Pipeline e486f4e34cb1526ecac3475fe0bedeb3 https://www.encodeproject.org/files/ENCFF009RUR/@@download/ENCFF009RUR.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF608TUH bigWig signal p-value ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF240RBJ, ENCFF659KOL, ENCFF683DQU, ENCFF786TLS 761042119 ENCODE Processing Pipeline 65c72daa3533344930f1a442ecf12df8 https://www.encodeproject.org/files/ENCFF608TUH/@@download/ENCFF608TUH.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF018DCF bigWig fold change over control ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ, ENCFF788FFM 793271526 ENCODE Processing Pipeline 6c28a6264b9b604fd5b8e3480e05737d https://www.encodeproject.org/files/ENCFF018DCF/@@download/ENCFF018DCF.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF724VJT bigWig fold change over control ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF240RBJ, ENCFF659KOL, ENCFF683DQU 534811901 ENCODE Processing Pipeline c0260d2a8b18e4fe1ded3885934b26cd https://www.encodeproject.org/files/ENCFF724VJT/@@download/ENCFF724VJT.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF186TOZ bigWig signal p-value ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ, ENCFF788FFM 781109199 ENCODE Processing Pipeline ac0460f89064b099c98ff9f3deaf622f https://www.encodeproject.org/files/ENCFF186TOZ/@@download/ENCFF186TOZ.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF503WHG bigWig fold change over control ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF138FPL, ENCFF647LGE, ENCFF788FFM 538062843 ENCODE Processing Pipeline 9dfe7fe2c165b2933fa1b6fa0b0fbe51 https://www.encodeproject.org/files/ENCFF503WHG/@@download/ENCFF503WHG.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF835SWC bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ 6392683 ENCODE Processing Pipeline 948b5e041781adbef373741551e875b4 https://www.encodeproject.org/files/ENCFF835SWC/@@download/ENCFF835SWC.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF179FTS bigWig fold change over control ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF240RBJ, ENCFF683DQU, ENCFF786TLS 534734672 ENCODE Processing Pipeline b9a9754329ee8b9ffde1d825f8870fc7 https://www.encodeproject.org/files/ENCFF179FTS/@@download/ENCFF179FTS.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF123UJJ bigWig fold change over control ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ 526838440 ENCODE Processing Pipeline 831c7170eb517f50700af1f8348365e3 https://www.encodeproject.org/files/ENCFF123UJJ/@@download/ENCFF123UJJ.bigWig hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF851ZNS bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF835SWC 12888918 ENCODE Processing Pipeline 6d733844cdbf1fd4d065d08ef3efaa58 https://www.encodeproject.org/files/ENCFF851ZNS/@@download/ENCFF851ZNS.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF115ZOD bigWig fold change over control ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF240RBJ, ENCFF659KOL, ENCFF683DQU, ENCFF786TLS 790659133 ENCODE Processing Pipeline 1919d99185fb677bc4be7d23c929542e https://www.encodeproject.org/files/ENCFF115ZOD/@@download/ENCFF115ZOD.bigWig GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF547GIJ bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ, ENCFF788FFM 6842772 ENCODE Processing Pipeline 5c86883bebbe6179bba9231e24255344 https://www.encodeproject.org/files/ENCFF547GIJ/@@download/ENCFF547GIJ.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF413KAR bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF011ZRR 11001390 ENCODE Processing Pipeline 6b769d9d33f02253bd9f376e00354521 https://www.encodeproject.org/files/ENCFF413KAR/@@download/ENCFF413KAR.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF621HTW bed narrowPeak conservative idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF001TDO, ENCFF011ZRR, ENCFF547GIJ, ENCFF835SWC 21221 ENCODE Processing Pipeline 51ef0f0a5a46ed44d6ff2a5e81830b7b https://www.encodeproject.org/files/ENCFF621HTW/@@download/ENCFF621HTW.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF176GTK bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF240RBJ, ENCFF683DQU, ENCFF786TLS 6372481 ENCODE Processing Pipeline 861980e081373c051615c12d91821be1 https://www.encodeproject.org/files/ENCFF176GTK/@@download/ENCFF176GTK.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF833KXP bed narrowPeak optimal idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF001TDO, ENCFF011ZRR, ENCFF547GIJ, ENCFF835SWC 43873 ENCODE Processing Pipeline 215555097926bb12b0154429fa63d0fe https://www.encodeproject.org/files/ENCFF833KXP/@@download/ENCFF833KXP.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF858RIU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF833KXP 153003 ENCODE Processing Pipeline 3916d8d2236fb622d34bce791a5d1a4b https://www.encodeproject.org/files/ENCFF858RIU/@@download/ENCFF858RIU.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF011ZRR bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF138FPL, ENCFF647LGE, ENCFF788FFM 4681633 ENCODE Processing Pipeline a4f8c8552ac239cf18baaac502d0326c https://www.encodeproject.org/files/ENCFF011ZRR/@@download/ENCFF011ZRR.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF477SUP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF621HTW 123138 ENCODE Processing Pipeline 7941ecacf6cd14c9d43e5c9a6df9c741 https://www.encodeproject.org/files/ENCFF477SUP/@@download/ENCFF477SUP.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF646KEC bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF547GIJ 13047874 ENCODE Processing Pipeline b1ddc30629cf7575b8942a2a180f651c https://www.encodeproject.org/files/ENCFF646KEC/@@download/ENCFF646KEC.bigBed hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF595XOF bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF240RBJ, ENCFF659KOL, ENCFF683DQU 4837884 ENCODE Processing Pipeline 7bc553fc169b919941ea629d8f826df6 https://www.encodeproject.org/files/ENCFF595XOF/@@download/ENCFF595XOF.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF887IVP bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF240RBJ, ENCFF659KOL, ENCFF683DQU, ENCFF786TLS 6826226 ENCODE Processing Pipeline 135c2ec57ad4f6e5f65f8ae25175bc32 https://www.encodeproject.org/files/ENCFF887IVP/@@download/ENCFF887IVP.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF316ULS bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF887IVP 13076649 ENCODE Processing Pipeline 107ec23ab0cfdfaec02d4ff27e933d43 https://www.encodeproject.org/files/ENCFF316ULS/@@download/ENCFF316ULS.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF046GWF bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF176GTK 12900286 ENCODE Processing Pipeline 9241ef9b4503da065eed11c1819ce367 https://www.encodeproject.org/files/ENCFF046GWF/@@download/ENCFF046GWF.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF562ADO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF237RPL 151247 ENCODE Processing Pipeline e6a83f9125df3cef3223013357715e5b https://www.encodeproject.org/files/ENCFF562ADO/@@download/ENCFF562ADO.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF605HUE bigBed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF595XOF 11105740 ENCODE Processing Pipeline 6f9ea19b22efb840ddfb50ccf17ca5a1 https://www.encodeproject.org/files/ENCFF605HUE/@@download/ENCFF605HUE.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF237RPL bed narrowPeak optimal idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF176GTK, ENCFF419RSJ, ENCFF595XOF, ENCFF887IVP 42093 ENCODE Processing Pipeline 58b0a8c7747dd8173a3b0aa870073ea6 https://www.encodeproject.org/files/ENCFF237RPL/@@download/ENCFF237RPL.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF631RMQ bed narrowPeak conservative idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF176GTK, ENCFF419RSJ, ENCFF595XOF, ENCFF887IVP 18980 ENCODE Processing Pipeline e4987686f399d91c918e1ec133168a0b https://www.encodeproject.org/files/ENCFF631RMQ/@@download/ENCFF631RMQ.bed.gz GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF079LAZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF631RMQ 118919 ENCODE Processing Pipeline 6f911eb45ec3ddf37668d59ec24ce5d9 https://www.encodeproject.org/files/ENCFF079LAZ/@@download/ENCFF079LAZ.bigBed GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000CIQ bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000CJC 876143493 Bradley Bernstein, Broad 9a9aadb920b4784b8b8a23d2746ca93c https://www.encodeproject.org/files/ENCFF000CIQ/@@download/ENCFF000CIQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF000CIS bigBed broadPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TBG 3112903 Bradley Bernstein, Broad eab0cde975f267eb75fa34c1e9e795d4 https://www.encodeproject.org/files/ENCFF000CIS/@@download/ENCFF000CIS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF000CIT bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000CJD 1325740739 Bradley Bernstein, Broad 7cddb176bdaa26ab0e5d7af50da4e468 https://www.encodeproject.org/files/ENCFF000CIT/@@download/ENCFF000CIT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF000CIV bigWig signal ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF000CIQ, ENCFF000CIT 628075359 Bradley Bernstein, Broad d4e1d092e54b1c1657545405143be6f7 https://www.encodeproject.org/files/ENCFF000CIV/@@download/ENCFF000CIV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF000CJC fastq reads ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 1842258626 Bradley Bernstein, Broad efe69fbb4eeecda8c8521d45d27760d1 https://www.encodeproject.org/files/ENCFF000CJC/@@download/ENCFF000CJC.fastq.gz Illumina Genome Analyzer II /files/ENCFF000CIW/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF000CJD fastq reads ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 1377375167 Bradley Bernstein, Broad ccc6107a1c3d5cdf6c0bb260a4463059 https://www.encodeproject.org/files/ENCFF000CJD/@@download/ENCFF000CJD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000CIU/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF001TBG bed broadPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF000CIQ, ENCFF000CIT 2009797 Bradley Bernstein, Broad ba7140d91d8969c6f1adab2ddf5a4a4f https://www.encodeproject.org/files/ENCFF001TBG/@@download/ENCFF001TBG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF002CEY bed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF000CIQ, ENCFF000CIT 1034559 ENCODE Consortium Analysis Working Group fbd1f02fde4cb1b1657d6375f4c28974 https://www.encodeproject.org/files/ENCFF002CEY/@@download/ENCFF002CEY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF496DTP bigBed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF002CEY 2141533 ENCODE Consortium f777330c583cb0adfac7642575bfda6c https://www.encodeproject.org/files/ENCFF496DTP/@@download/ENCFF496DTP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF636PAF bam unfiltered alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CJC, ENCFF643CGH 2037281557 ENCODE Processing Pipeline 6491464f19f6e8cae84f9c9453185b12 https://www.encodeproject.org/files/ENCFF636PAF/@@download/ENCFF636PAF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF623PRW bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CJC, ENCFF643CGH 351293899 ENCODE Processing Pipeline 1d55a9b8d98e04ef13cb42b6f60cc6ba https://www.encodeproject.org/files/ENCFF623PRW/@@download/ENCFF623PRW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF251VSK bam unfiltered alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CJD, ENCFF643CGH 1756877045 ENCODE Processing Pipeline dae4e8cc506a500ab7849d07131f3027 https://www.encodeproject.org/files/ENCFF251VSK/@@download/ENCFF251VSK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF977USM bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CJD, ENCFF643CGH 708863299 ENCODE Processing Pipeline ce96c2b56cf1625617077d10743c332a https://www.encodeproject.org/files/ENCFF977USM/@@download/ENCFF977USM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF238GWH bam unfiltered alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CJC, ENCFF807MUK 2033475019 ENCODE Processing Pipeline 7ca2cfecac518b94724f85f146b57ce1 https://www.encodeproject.org/files/ENCFF238GWH/@@download/ENCFF238GWH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF888NSJ bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CJC, ENCFF807MUK 351373762 ENCODE Processing Pipeline 55db3e313b82e285fc0543e088651460 https://www.encodeproject.org/files/ENCFF888NSJ/@@download/ENCFF888NSJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF639EWV bam unfiltered alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CJD, ENCFF807MUK 1748605606 ENCODE Processing Pipeline 24e7e98ee36727486d55c2114d34d517 https://www.encodeproject.org/files/ENCFF639EWV/@@download/ENCFF639EWV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF562WQJ bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CJD, ENCFF807MUK 709209896 ENCODE Processing Pipeline 24c74e3e037aa0c3c6ee9b23bacbe886 https://www.encodeproject.org/files/ENCFF562WQJ/@@download/ENCFF562WQJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF988NNB bigWig signal p-value ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF623PRW 241926769 ENCODE Processing Pipeline fe7adae06871546dbe210dea0159cb35 https://www.encodeproject.org/files/ENCFF988NNB/@@download/ENCFF988NNB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF141HXJ bigWig signal p-value ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF977USM 315462341 ENCODE Processing Pipeline 38aeb8d5e40371425689b8034f47a7f5 https://www.encodeproject.org/files/ENCFF141HXJ/@@download/ENCFF141HXJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF558MML bigWig signal p-value ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF623PRW, ENCFF977USM 329427470 ENCODE Processing Pipeline 0a172db773c6a93aa46b8edd73c40a58 https://www.encodeproject.org/files/ENCFF558MML/@@download/ENCFF558MML.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF895RCW bigWig fold change over control ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF623PRW 135086466 ENCODE Processing Pipeline 9b7cb267b76e7b258094d80688bdd29a https://www.encodeproject.org/files/ENCFF895RCW/@@download/ENCFF895RCW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF103SCN bigWig fold change over control ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF977USM 255495605 ENCODE Processing Pipeline 24bd1f795d976289c1bc7db09e7aec16 https://www.encodeproject.org/files/ENCFF103SCN/@@download/ENCFF103SCN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF146YJY bigWig fold change over control ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF623PRW, ENCFF977USM 347140130 ENCODE Processing Pipeline f99113d3a47eafc582a3cf7850ded941 https://www.encodeproject.org/files/ENCFF146YJY/@@download/ENCFF146YJY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF526IXJ bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF623PRW 2394466 ENCODE Processing Pipeline 4d9a3381ae4459656f13ab0250772dd3 https://www.encodeproject.org/files/ENCFF526IXJ/@@download/ENCFF526IXJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF102DCN bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF977USM 4374133 ENCODE Processing Pipeline f411d6e8c5f50e6e5f3b13a51f2935ed https://www.encodeproject.org/files/ENCFF102DCN/@@download/ENCFF102DCN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF749JKL bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF623PRW, ENCFF977USM 4231100 ENCODE Processing Pipeline 742c89f51b0bb234d9d35767ac8e1f99 https://www.encodeproject.org/files/ENCFF749JKL/@@download/ENCFF749JKL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF961LBE bigBed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF526IXJ 5070497 ENCODE Processing Pipeline 3d7c2721760faf386354142c5e6fb57b https://www.encodeproject.org/files/ENCFF961LBE/@@download/ENCFF961LBE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF867WAB bigBed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF102DCN 10634474 ENCODE Processing Pipeline cb4b72d91c055b205303bf45552a8c53 https://www.encodeproject.org/files/ENCFF867WAB/@@download/ENCFF867WAB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF282PSI bigBed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF749JKL 10505795 ENCODE Processing Pipeline 6a24c72130d96350c9ae44148cc9cd8e https://www.encodeproject.org/files/ENCFF282PSI/@@download/ENCFF282PSI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF825LUV bed narrowPeak conservative idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF102DCN, ENCFF419RSJ, ENCFF526IXJ, ENCFF749JKL 731972 ENCODE Processing Pipeline 39f8ce8939e57aa69438745a09fc8b81 https://www.encodeproject.org/files/ENCFF825LUV/@@download/ENCFF825LUV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF361RQG bigBed narrowPeak conservative idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF825LUV 1315364 ENCODE Processing Pipeline 60bba7cc9ac13e3475bf0b09055f087a https://www.encodeproject.org/files/ENCFF361RQG/@@download/ENCFF361RQG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF798RFA bed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF102DCN, ENCFF419RSJ, ENCFF526IXJ, ENCFF749JKL 799189 ENCODE Processing Pipeline f610b9fc10b57facbe497470b6cfd0da https://www.encodeproject.org/files/ENCFF798RFA/@@download/ENCFF798RFA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF893KUG bigBed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF798RFA 1407176 ENCODE Processing Pipeline 32f361badb8cc08f3a0b5cbe7d5808a8 https://www.encodeproject.org/files/ENCFF893KUG/@@download/ENCFF893KUG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF338SQH bigWig signal p-value ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF888NSJ 551189185 ENCODE Processing Pipeline 02e0d8f6eb38a2826d6046af9a4a3c9f https://www.encodeproject.org/files/ENCFF338SQH/@@download/ENCFF338SQH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF789CAF bigWig fold change over control ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF888NSJ 203398656 ENCODE Processing Pipeline 26abe5c0a17af96cb5ea70f39f1ebe9d https://www.encodeproject.org/files/ENCFF789CAF/@@download/ENCFF789CAF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF687ENJ bigWig signal p-value ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ 549695728 ENCODE Processing Pipeline f0f0492d8ea44b400e60f0df7592d77f https://www.encodeproject.org/files/ENCFF687ENJ/@@download/ENCFF687ENJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF849CJT bigWig signal p-value ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ, ENCFF888NSJ 697422910 ENCODE Processing Pipeline 663b9d96f9cf9afb6bf27994b6430442 https://www.encodeproject.org/files/ENCFF849CJT/@@download/ENCFF849CJT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF478LRK bigWig fold change over control ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ 389801462 ENCODE Processing Pipeline 0c7a405c11428ab0f532862e2946fb1f https://www.encodeproject.org/files/ENCFF478LRK/@@download/ENCFF478LRK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF487IBG bigWig fold change over control ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ, ENCFF888NSJ 524246776 ENCODE Processing Pipeline 8b4fd9f7a6164e0f3f04e5bd36648893 https://www.encodeproject.org/files/ENCFF487IBG/@@download/ENCFF487IBG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF622MTR bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF888NSJ 2587546 ENCODE Processing Pipeline 4997657dc1df0656efb6e59a94f8b6a0 https://www.encodeproject.org/files/ENCFF622MTR/@@download/ENCFF622MTR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF326AWX bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ 4972678 ENCODE Processing Pipeline 1188e67a8edba26ab763fa335d0c8fbd https://www.encodeproject.org/files/ENCFF326AWX/@@download/ENCFF326AWX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF941LGN bigBed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF622MTR 5390841 ENCODE Processing Pipeline 4735b50bdf64642bd867f4b15a153ba1 https://www.encodeproject.org/files/ENCFF941LGN/@@download/ENCFF941LGN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF991HPY bed narrowPeak conservative idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF180UME, ENCFF326AWX, ENCFF622MTR 727661 ENCODE Processing Pipeline 74e24e8e6d6626a425dab11d0564e8a6 https://www.encodeproject.org/files/ENCFF991HPY/@@download/ENCFF991HPY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF132SNY bigBed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF326AWX 11307607 ENCODE Processing Pipeline 48f82a61c2e4ed829e78fd19d5d29079 https://www.encodeproject.org/files/ENCFF132SNY/@@download/ENCFF132SNY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF180UME bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ, ENCFF888NSJ 4714191 ENCODE Processing Pipeline 128b70c69e63dfdcc80ef3cc64303ae0 https://www.encodeproject.org/files/ENCFF180UME/@@download/ENCFF180UME.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF344LZZ bigBed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF180UME 11474556 ENCODE Processing Pipeline d8e330f12917fc48803fd5c71d123814 https://www.encodeproject.org/files/ENCFF344LZZ/@@download/ENCFF344LZZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF872JQR bigBed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF638OUB 1358502 ENCODE Processing Pipeline cce79af3da63ccc41b47983ab7b829c7 https://www.encodeproject.org/files/ENCFF872JQR/@@download/ENCFF872JQR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF316TXP bigBed narrowPeak conservative idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF991HPY 1305967 ENCODE Processing Pipeline dad7b5a8164b65504bc23602a07ba2a0 https://www.encodeproject.org/files/ENCFF316TXP/@@download/ENCFF316TXP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF638OUB bed narrowPeak optimal idr thresholded peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF180UME, ENCFF326AWX, ENCFF622MTR 769456 ENCODE Processing Pipeline d417f489c6a7b0ca45096009a20f040e https://www.encodeproject.org/files/ENCFF638OUB/@@download/ENCFF638OUB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF000BAP bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000BBE 1588699606 Bradley Bernstein, Broad 487ec2c53ce8c47ff9aa0993963b4204 https://www.encodeproject.org/files/ENCFF000BAP/@@download/ENCFF000BAP.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000BAQ bigBed broadPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SVS 1623103 Bradley Bernstein, Broad 9df5ae25de396e368ca46c5d68a8f2f8 https://www.encodeproject.org/files/ENCFF000BAQ/@@download/ENCFF000BAQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000BAR bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF000BBD 1116395847 Bradley Bernstein, Broad 29f2b48d234054071c562f01dfb539db https://www.encodeproject.org/files/ENCFF000BAR/@@download/ENCFF000BAR.bam hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000BAV bigWig signal ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 534788915 Bradley Bernstein, Broad 757141c22c308f1b70fc9287d5db4f4b https://www.encodeproject.org/files/ENCFF000BAV/@@download/ENCFF000BAV.bigWig hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF000BBD fastq reads ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 1081866217 Bradley Bernstein, Broad acef39efad1fe809037c87549b84985a https://www.encodeproject.org/files/ENCFF000BBD/@@download/ENCFF000BBD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BAO/ released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000BBE fastq reads ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1572753026 Bradley Bernstein, Broad 2210d013a2d7475b1cfefcdb75dc7bcf https://www.encodeproject.org/files/ENCFF000BBE/@@download/ENCFF000BBE.fastq.gz Illumina HiSeq 2000 /files/ENCFF000BAU/ released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF001SVS bed broadPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 944437 Bradley Bernstein, Broad 3b4905db76601f5be1f893a12b9c4590 https://www.encodeproject.org/files/ENCFF001SVS/@@download/ENCFF001SVS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF002CDX bed narrowPeak optimal idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 36455 ENCODE Consortium Analysis Working Group 84d947b6e6084a070659758411a4601d https://www.encodeproject.org/files/ENCFF002CDX/@@download/ENCFF002CDX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms missing derived_from ENCFF322DEM bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE ENCFF002CDX 140225 ENCODE Consortium 8759634ac9c1aa801141449b2f6b1f7d https://www.encodeproject.org/files/ENCFF322DEM/@@download/ENCFF322DEM.bigBed hg19 archived low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF005PUA bam unfiltered alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000BBD, ENCFF643CGH 1403100242 ENCODE Processing Pipeline 345249cefa5fd1c93c3450b4dd6be79f https://www.encodeproject.org/files/ENCFF005PUA/@@download/ENCFF005PUA.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF846NVE bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000BBD, ENCFF643CGH 894047043 ENCODE Processing Pipeline 952973c3ccfaf173178f18590d6adbc4 https://www.encodeproject.org/files/ENCFF846NVE/@@download/ENCFF846NVE.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF307JSM bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BBE, ENCFF643CGH 1259034298 ENCODE Processing Pipeline bc4305d2bf794879266442c1e059ed66 https://www.encodeproject.org/files/ENCFF307JSM/@@download/ENCFF307JSM.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF518HTA bam unfiltered alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BBE, ENCFF643CGH 2007404142 ENCODE Processing Pipeline b05c7c553c7822c3f1fe30ffb39153d4 https://www.encodeproject.org/files/ENCFF518HTA/@@download/ENCFF518HTA.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF546PNT bam unfiltered alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000BBD, ENCFF807MUK 1395989924 ENCODE Processing Pipeline 7633f09307bdc608537dbd1b8f88aa35 https://www.encodeproject.org/files/ENCFF546PNT/@@download/ENCFF546PNT.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF081LSC bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000BBD, ENCFF807MUK 894265281 ENCODE Processing Pipeline ae08a4197571f1228cb72c34c27da534 https://www.encodeproject.org/files/ENCFF081LSC/@@download/ENCFF081LSC.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF546IAO bam unfiltered alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BBE, ENCFF807MUK 1999124948 ENCODE Processing Pipeline 6716239c91b9c062bdc7957a5e4626b3 https://www.encodeproject.org/files/ENCFF546IAO/@@download/ENCFF546IAO.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF162NDI bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BBE, ENCFF807MUK 1259338272 ENCODE Processing Pipeline bbf71b5300d82fdd78bd073642008772 https://www.encodeproject.org/files/ENCFF162NDI/@@download/ENCFF162NDI.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF967TSR bigWig fold change over control ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF307JSM, ENCFF432JPE, ENCFF818YAG, ENCFF846NVE 1325050680 ENCODE Processing Pipeline c824ff3f67d1f9245d3d9f55df72dd1c https://www.encodeproject.org/files/ENCFF967TSR/@@download/ENCFF967TSR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF617QDX bigBed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF301AYA 12338568 ENCODE Processing Pipeline c0b4e5b5a3f5ed41673b16c16e06fed0 https://www.encodeproject.org/files/ENCFF617QDX/@@download/ENCFF617QDX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF669NZY bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF260KLJ 169681 ENCODE Processing Pipeline b8e68c31cec0122297a0bb26884152e4 https://www.encodeproject.org/files/ENCFF669NZY/@@download/ENCFF669NZY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF608VTG bigWig signal p-value ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF307JSM, ENCFF432JPE, ENCFF818YAG 974972174 ENCODE Processing Pipeline 75b56f121e8e9817162298f57ad7c61d https://www.encodeproject.org/files/ENCFF608VTG/@@download/ENCFF608VTG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF664YEC bigWig signal p-value ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF432JPE, ENCFF818YAG, ENCFF846NVE 924507425 ENCODE Processing Pipeline c21153cfb1bc2452984b53e40b761d58 https://www.encodeproject.org/files/ENCFF664YEC/@@download/ENCFF664YEC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF407KBO bigWig signal p-value ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF307JSM, ENCFF432JPE, ENCFF818YAG, ENCFF846NVE 1310410071 ENCODE Processing Pipeline f6662e9268d058affafc569d2156d3d2 https://www.encodeproject.org/files/ENCFF407KBO/@@download/ENCFF407KBO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF756JVB bigWig fold change over control ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF307JSM, ENCFF432JPE, ENCFF818YAG 1001290027 ENCODE Processing Pipeline 4c7c4c68f981f734600c7c7e178a4d49 https://www.encodeproject.org/files/ENCFF756JVB/@@download/ENCFF756JVB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF723QGA bigWig fold change over control ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF432JPE, ENCFF818YAG, ENCFF846NVE 905601630 ENCODE Processing Pipeline f33fa5d8e7f16f54e92dddd5a059dd2c https://www.encodeproject.org/files/ENCFF723QGA/@@download/ENCFF723QGA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF301AYA bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF307JSM, ENCFF432JPE, ENCFF818YAG 7154350 ENCODE Processing Pipeline c374134d3fe190ba0c04349d5a9be894 https://www.encodeproject.org/files/ENCFF301AYA/@@download/ENCFF301AYA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF859XKI bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF432JPE, ENCFF818YAG, ENCFF846NVE 6967662 ENCODE Processing Pipeline 3f7dfea05071114dbf19fa27640feaf9 https://www.encodeproject.org/files/ENCFF859XKI/@@download/ENCFF859XKI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF406ZUF bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF307JSM, ENCFF432JPE, ENCFF818YAG, ENCFF846NVE 7207505 ENCODE Processing Pipeline 7bbd163b1d9fe6b7508912a534f27df7 https://www.encodeproject.org/files/ENCFF406ZUF/@@download/ENCFF406ZUF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF634VSM bigBed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF859XKI 12457415 ENCODE Processing Pipeline fa28993d8ef127f07af2212ebbbafc8e https://www.encodeproject.org/files/ENCFF634VSM/@@download/ENCFF634VSM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF396KPC bigBed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF406ZUF 12199844 ENCODE Processing Pipeline 4e6ef93d092dbebdcbffb0473ec9f5de https://www.encodeproject.org/files/ENCFF396KPC/@@download/ENCFF396KPC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF248NPI bed narrowPeak conservative idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF301AYA, ENCFF406ZUF, ENCFF419RSJ, ENCFF859XKI 52870 ENCODE Processing Pipeline 96f8f6ca5be8cf511a656ffaf90b7004 https://www.encodeproject.org/files/ENCFF248NPI/@@download/ENCFF248NPI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF905VZO bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF248NPI 169066 ENCODE Processing Pipeline 556764f569a6383b04ba1c7ef9652c52 https://www.encodeproject.org/files/ENCFF905VZO/@@download/ENCFF905VZO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF260KLJ bed narrowPeak optimal idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF301AYA, ENCFF406ZUF, ENCFF419RSJ, ENCFF859XKI 53062 ENCODE Processing Pipeline c5c24757a2a99ecae2f1c035c07a86bb https://www.encodeproject.org/files/ENCFF260KLJ/@@download/ENCFF260KLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF550WXF bigWig signal p-value ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 968899529 ENCODE Processing Pipeline f33c6d80a3c63fd4f3a23a03d8cf46bf https://www.encodeproject.org/files/ENCFF550WXF/@@download/ENCFF550WXF.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF617WWE bigBed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF427OVX 12310959 ENCODE Processing Pipeline c1256caee3d13db588b75efe9870b756 https://www.encodeproject.org/files/ENCFF617WWE/@@download/ENCFF617WWE.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF948XDA bigWig signal p-value ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF081LSC, ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 1109139274 ENCODE Processing Pipeline 3a2ebd79cff5522a0e2ef39b6fe0ca45 https://www.encodeproject.org/files/ENCFF948XDA/@@download/ENCFF948XDA.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF078EDJ bigWig fold change over control ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF081LSC, ENCFF385UZW, ENCFF451SVK 897696115 ENCODE Processing Pipeline 5fb43a559a4147d868084bc7dea700b0 https://www.encodeproject.org/files/ENCFF078EDJ/@@download/ENCFF078EDJ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF920YXQ bigWig fold change over control ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF081LSC, ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 1316487211 ENCODE Processing Pipeline a65fbec110305da9a0b61fb08f53f887 https://www.encodeproject.org/files/ENCFF920YXQ/@@download/ENCFF920YXQ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF825VNO bigWig fold change over control ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 985357232 ENCODE Processing Pipeline 6d9d5869351572dcb03e6800cb0e3a97 https://www.encodeproject.org/files/ENCFF825VNO/@@download/ENCFF825VNO.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF314QBQ bigWig signal p-value ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF081LSC, ENCFF385UZW, ENCFF451SVK 994875622 ENCODE Processing Pipeline 56d72088b8bf207cab1b382a2f6bbcf7 https://www.encodeproject.org/files/ENCFF314QBQ/@@download/ENCFF314QBQ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF427OVX bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 7129465 ENCODE Processing Pipeline 3db874c77069df603d5724689104ce58 https://www.encodeproject.org/files/ENCFF427OVX/@@download/ENCFF427OVX.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF233VOB bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF081LSC, ENCFF385UZW, ENCFF451SVK 7031154 ENCODE Processing Pipeline 50d95775fa519159ed5d5427434147cd https://www.encodeproject.org/files/ENCFF233VOB/@@download/ENCFF233VOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF981RBQ bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF081LSC, ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 7234796 ENCODE Processing Pipeline 407b41808f38bfea266141a5d7b84180 https://www.encodeproject.org/files/ENCFF981RBQ/@@download/ENCFF981RBQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF467ICR bigBed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF233VOB 12511292 ENCODE Processing Pipeline cd11050744aa8ae974cd732c47610766 https://www.encodeproject.org/files/ENCFF467ICR/@@download/ENCFF467ICR.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF764IWA bigBed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF981RBQ 12222733 ENCODE Processing Pipeline 2fa358f85e8936cbdf072db6e08b4206 https://www.encodeproject.org/files/ENCFF764IWA/@@download/ENCFF764IWA.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF663WVM bed narrowPeak conservative idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF233VOB, ENCFF427OVX, ENCFF981RBQ 57013 ENCODE Processing Pipeline 97d59b0fcc7ecc2bdb331c0944d164e0 https://www.encodeproject.org/files/ENCFF663WVM/@@download/ENCFF663WVM.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF294NJP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF663WVM 174328 ENCODE Processing Pipeline 51e29939f47d7138b52eec0ada5ae925 https://www.encodeproject.org/files/ENCFF294NJP/@@download/ENCFF294NJP.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF751GGI bed narrowPeak optimal idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF233VOB, ENCFF427OVX, ENCFF981RBQ 57412 ENCODE Processing Pipeline 7aedab00b9f60d6da4433352c11c9015 https://www.encodeproject.org/files/ENCFF751GGI/@@download/ENCFF751GGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF738BXT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF751GGI 175562 ENCODE Processing Pipeline 2111f3a044ae7389a91b2e03847ffe13 https://www.encodeproject.org/files/ENCFF738BXT/@@download/ENCFF738BXT.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF000QDK bigBed broadPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKT 1468709 Richard Myers, HAIB 5f5c62829a2f7746a0afceab575c44d2 https://www.encodeproject.org/files/ENCFF000QDK/@@download/ENCFF000QDK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDL bigBed broadPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKU 1570729 Richard Myers, HAIB df20fcc3d4f72ba9e0cc98a79ca07870 https://www.encodeproject.org/files/ENCFF000QDL/@@download/ENCFF000QDL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDM bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QDX 1188633411 Richard Myers, HAIB bbc1875d667b03bf45dadba8c114007d https://www.encodeproject.org/files/ENCFF000QDM/@@download/ENCFF000QDM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDN bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QDY 1084199150 Richard Myers, HAIB d2a8c82963d765975a842011aee6e650 https://www.encodeproject.org/files/ENCFF000QDN/@@download/ENCFF000QDN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDP bigWig raw signal ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 77697882 Richard Myers, HAIB e8421b5c7bf0f7469f28811a9cc3572d https://www.encodeproject.org/files/ENCFF000QDP/@@download/ENCFF000QDP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000QDQ bigWig raw signal ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 84397178 Richard Myers, HAIB 9006e1f933bf5eb538d8130609202ceb https://www.encodeproject.org/files/ENCFF000QDQ/@@download/ENCFF000QDQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QDX fastq reads ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1210086523 Richard Myers, HAIB 792ab7fc24b36de1ed2bd26df78d962d https://www.encodeproject.org/files/ENCFF000QDX/@@download/ENCFF000QDX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDY fastq reads ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1202184777 Richard Myers, HAIB 5228a4d13ac3faae7a64af1b12c0d9d6 https://www.encodeproject.org/files/ENCFF000QDY/@@download/ENCFF000QDY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF001UKT bed broadPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 761817 Richard Myers, HAIB 565f9ad826cef16de8d415a996a4ad7f https://www.encodeproject.org/files/ENCFF001UKT/@@download/ENCFF001UKT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UKU bed broadPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 895255 Richard Myers, HAIB c28ca2b77ed0744ecc40bf064d950949 https://www.encodeproject.org/files/ENCFF001UKU/@@download/ENCFF001UKU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002CMI bed narrowPeak optimal idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 532836 ENCODE Consortium Analysis Working Group 7fe8a69c0507eec9a25e61ba3bca8410 https://www.encodeproject.org/files/ENCFF002CMI/@@download/ENCFF002CMI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF813NUH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMI 1402993 ENCODE Consortium b06f8b3d23dd06ddbdac4e4c30926273 https://www.encodeproject.org/files/ENCFF813NUH/@@download/ENCFF813NUH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF413ABF bam unfiltered alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDX, ENCFF643CGH 1423411199 ENCODE Processing Pipeline a6d50df7fbe1e5c5a980533cc355aa8b https://www.encodeproject.org/files/ENCFF413ABF/@@download/ENCFF413ABF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF580SKM bam unfiltered alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDY, ENCFF643CGH 1366729153 ENCODE Processing Pipeline bc612bc751703b54f2cb189a912cee69 https://www.encodeproject.org/files/ENCFF580SKM/@@download/ENCFF580SKM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF569DZM bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDX, ENCFF643CGH 906913300 ENCODE Processing Pipeline 1b0bc1603abb69dce28020f3469b7a1e https://www.encodeproject.org/files/ENCFF569DZM/@@download/ENCFF569DZM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF140UJB bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDY, ENCFF643CGH 744417770 ENCODE Processing Pipeline dfeffef05dd93ebb0251b324379048d7 https://www.encodeproject.org/files/ENCFF140UJB/@@download/ENCFF140UJB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF612KLG bam unfiltered alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDY, ENCFF807MUK 1368956877 ENCODE Processing Pipeline dde0c1ad5abfd1b873ff47ff574b8fc8 https://www.encodeproject.org/files/ENCFF612KLG/@@download/ENCFF612KLG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF048TRY bam unfiltered alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDX, ENCFF807MUK 1423943675 ENCODE Processing Pipeline ae56b6a47d5f9ce0358ddb50d5a29ea0 https://www.encodeproject.org/files/ENCFF048TRY/@@download/ENCFF048TRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF822HFC bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDY, ENCFF807MUK 745061537 ENCODE Processing Pipeline d45e7222baf1f131500d9e5a6de53106 https://www.encodeproject.org/files/ENCFF822HFC/@@download/ENCFF822HFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF359UUS bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDX, ENCFF807MUK 907749891 ENCODE Processing Pipeline fcb194ca075724383b600743d6f360da https://www.encodeproject.org/files/ENCFF359UUS/@@download/ENCFF359UUS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF341OAI bigWig signal p-value ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF569DZM, ENCFF772PJM 203236030 ENCODE Processing Pipeline 2ad99c6d168fe654e62a8c21cdd5435f https://www.encodeproject.org/files/ENCFF341OAI/@@download/ENCFF341OAI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF537OJY bigWig signal p-value ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140UJB, ENCFF772PJM 204096087 ENCODE Processing Pipeline 0b0f31dc423d05877122642357f9addf https://www.encodeproject.org/files/ENCFF537OJY/@@download/ENCFF537OJY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF042CRO bigWig signal p-value ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140UJB, ENCFF569DZM, ENCFF772PJM 192470950 ENCODE Processing Pipeline df46a4bcfb7a2c55296211ca9cc91c70 https://www.encodeproject.org/files/ENCFF042CRO/@@download/ENCFF042CRO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF281XOP bigWig fold change over control ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF569DZM, ENCFF772PJM 296630009 ENCODE Processing Pipeline eefef6d5be23b3f85c3c14e3707d2407 https://www.encodeproject.org/files/ENCFF281XOP/@@download/ENCFF281XOP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF596NUY bigWig fold change over control ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140UJB, ENCFF772PJM 228072903 ENCODE Processing Pipeline e3495ece33da881f42efc21831d9efeb https://www.encodeproject.org/files/ENCFF596NUY/@@download/ENCFF596NUY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF125TEX bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF140UJB, ENCFF772PJM 6389450 ENCODE Processing Pipeline bcc60babc2cbc5fe323f83b0ddfd8011 https://www.encodeproject.org/files/ENCFF125TEX/@@download/ENCFF125TEX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF273XOJ bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140UJB, ENCFF569DZM, ENCFF772PJM 6982465 ENCODE Processing Pipeline a42601e81116724d570824c0fd0163d7 https://www.encodeproject.org/files/ENCFF273XOJ/@@download/ENCFF273XOJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF547IOW bigWig fold change over control ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF140UJB, ENCFF569DZM, ENCFF772PJM 451469657 ENCODE Processing Pipeline 080c234a0be1ad37cfa9699d018f92f1 https://www.encodeproject.org/files/ENCFF547IOW/@@download/ENCFF547IOW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF634MAL bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF569DZM, ENCFF772PJM 6576006 ENCODE Processing Pipeline c72e6c0fa31d60b4d09f812ceb5e5ddf https://www.encodeproject.org/files/ENCFF634MAL/@@download/ENCFF634MAL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF854UQT bigBed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF634MAL 11972269 ENCODE Processing Pipeline 2a41ae13f19b277ac981105640eec4e8 https://www.encodeproject.org/files/ENCFF854UQT/@@download/ENCFF854UQT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF867QWZ bigBed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF273XOJ 11784616 ENCODE Processing Pipeline 1c4531aa24809a06d47d479c056a2c90 https://www.encodeproject.org/files/ENCFF867QWZ/@@download/ENCFF867QWZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF757ZGV bed narrowPeak conservative idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF125TEX, ENCFF273XOJ, ENCFF419RSJ, ENCFF634MAL 523928 ENCODE Processing Pipeline 5de4c0f1ed3d8f7300df63df129ec0c4 https://www.encodeproject.org/files/ENCFF757ZGV/@@download/ENCFF757ZGV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF028THW bigBed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF125TEX 11613164 ENCODE Processing Pipeline f683dacf3fdcb8463bc079e5824218eb https://www.encodeproject.org/files/ENCFF028THW/@@download/ENCFF028THW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF182YZG bed narrowPeak optimal idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF125TEX, ENCFF273XOJ, ENCFF419RSJ, ENCFF634MAL 664881 ENCODE Processing Pipeline b944c338bd7ff9253c3498707b9b6b12 https://www.encodeproject.org/files/ENCFF182YZG/@@download/ENCFF182YZG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF361RZS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF757ZGV 1191290 ENCODE Processing Pipeline 5c7b89b4c5bf24491e0dbc6d50db97dc https://www.encodeproject.org/files/ENCFF361RZS/@@download/ENCFF361RZS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF843WMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF182YZG 1409434 ENCODE Processing Pipeline 7a00010453d6a3e66e71479d1d15c7d2 https://www.encodeproject.org/files/ENCFF843WMB/@@download/ENCFF843WMB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF882IKH bigBed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF281VBW 11609158 ENCODE Processing Pipeline 20ffea6b55d6bf45a42d02c19dc36393 https://www.encodeproject.org/files/ENCFF882IKH/@@download/ENCFF882IKH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF111UDE bigWig signal p-value ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF822HFC 204284084 ENCODE Processing Pipeline 302fb319f529cc725fbf881ee03fe1a0 https://www.encodeproject.org/files/ENCFF111UDE/@@download/ENCFF111UDE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF666QLJ bigBed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF773FKD 11932358 ENCODE Processing Pipeline ae8cb69a614fd30ed3e83c7fb9bb8d72 https://www.encodeproject.org/files/ENCFF666QLJ/@@download/ENCFF666QLJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF749YKR bigWig fold change over control ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF359UUS, ENCFF750MIM 296407693 ENCODE Processing Pipeline 7f3cf7d76f105295a0e987b18eb6e689 https://www.encodeproject.org/files/ENCFF749YKR/@@download/ENCFF749YKR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF773FKD bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF359UUS, ENCFF750MIM 6546659 ENCODE Processing Pipeline 08864145e19459cd310de1f439f45367 https://www.encodeproject.org/files/ENCFF773FKD/@@download/ENCFF773FKD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF866XQK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF998LIN 1190418 ENCODE Processing Pipeline 64f951bfad7ecf03e1f4827c36b0a7f9 https://www.encodeproject.org/files/ENCFF866XQK/@@download/ENCFF866XQK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF032WEB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF947KPB 1409775 ENCODE Processing Pipeline 951a52343db3195e9a093b5d95effdd6 https://www.encodeproject.org/files/ENCFF032WEB/@@download/ENCFF032WEB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF166JUY bigWig fold change over control ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF822HFC 227379493 ENCODE Processing Pipeline be3c566fb1cb9d597e29eaebba005607 https://www.encodeproject.org/files/ENCFF166JUY/@@download/ENCFF166JUY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF481CBJ bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF359UUS, ENCFF750MIM, ENCFF822HFC 6982709 ENCODE Processing Pipeline a13e01909d8bafdf7d8847c8ab5fb890 https://www.encodeproject.org/files/ENCFF481CBJ/@@download/ENCFF481CBJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF211UXU bigWig signal p-value ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF359UUS, ENCFF750MIM 203437124 ENCODE Processing Pipeline ee2d6ebcac46e1cd80e9ce671e9d56ae https://www.encodeproject.org/files/ENCFF211UXU/@@download/ENCFF211UXU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF519VFR bigWig fold change over control ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF359UUS, ENCFF750MIM, ENCFF822HFC 452281166 ENCODE Processing Pipeline f1afd6d7d9e4006ff5397fb80dca4c68 https://www.encodeproject.org/files/ENCFF519VFR/@@download/ENCFF519VFR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF837BYR bigBed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF481CBJ 11778599 ENCODE Processing Pipeline 6c0ab06456a0f093eeece328e0e643cb https://www.encodeproject.org/files/ENCFF837BYR/@@download/ENCFF837BYR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF947KPB bed narrowPeak optimal idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF281VBW, ENCFF481CBJ, ENCFF773FKD 666860 ENCODE Processing Pipeline eca36e86c5002474a3e913a6d4cb699e https://www.encodeproject.org/files/ENCFF947KPB/@@download/ENCFF947KPB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF248YES bigWig signal p-value ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF359UUS, ENCFF750MIM, ENCFF822HFC 192904487 ENCODE Processing Pipeline c118c8eee1c348a8dd9910d5a1ce6e42 https://www.encodeproject.org/files/ENCFF248YES/@@download/ENCFF248YES.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF281VBW bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF822HFC 6390721 ENCODE Processing Pipeline 7a0c6ee271e217a9d7a0739ed77a469e https://www.encodeproject.org/files/ENCFF281VBW/@@download/ENCFF281VBW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF998LIN bed narrowPeak conservative idr thresholded peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF281VBW, ENCFF481CBJ, ENCFF773FKD 525472 ENCODE Processing Pipeline ea0118d2f0cabd52b8d662f2626371a9 https://www.encodeproject.org/files/ENCFF998LIN/@@download/ENCFF998LIN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QZR bam alignments ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RAE 1465403900 Richard Myers, HAIB b52b2a21d4abed41cd6b99f3380ef99c https://www.encodeproject.org/files/ENCFF000QZR/@@download/ENCFF000QZR.bam hg19 released biological replicates with identical biosample ENCFF000QZS bigBed broadPeak peaks ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPP 980344 Richard Myers, HAIB ff957b5441f908bb5a589e04b375e5a6 https://www.encodeproject.org/files/ENCFF000QZS/@@download/ENCFF000QZS.bigBed hg19 released biological replicates with identical biosample ENCFF000QZT bigBed broadPeak peaks ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPQ 371282 Richard Myers, HAIB 5810ee5428270f40f4b8234f9e71b736 https://www.encodeproject.org/files/ENCFF000QZT/@@download/ENCFF000QZT.bigBed hg19 released biological replicates with identical biosample ENCFF000QZU bam alignments ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RAK 2125762946 Richard Myers, HAIB 7454d1b1728d4d13b653bd254bfe064b https://www.encodeproject.org/files/ENCFF000QZU/@@download/ENCFF000QZU.bam hg19 released biological replicates with identical biosample ENCFF000QZW bigWig raw signal ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 198953276 Richard Myers, HAIB cbbf34ca2a60fd12f54c0eeb6da77974 https://www.encodeproject.org/files/ENCFF000QZW/@@download/ENCFF000QZW.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QZX bigWig raw signal ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 245759379 Richard Myers, HAIB 238ad9eb9248add128ea940267f88644 https://www.encodeproject.org/files/ENCFF000QZX/@@download/ENCFF000QZX.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RAE fastq reads ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1498418839 Richard Myers, HAIB 7215db11b343853d59b3824b65f36ef7 https://www.encodeproject.org/files/ENCFF000RAE/@@download/ENCFF000RAE.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF000RAK fastq reads ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2230887547 Richard Myers, HAIB 8529b7934fd3def9f76f872db7b79dfa https://www.encodeproject.org/files/ENCFF000RAK/@@download/ENCFF000RAK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPP bed broadPeak peaks ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 1 538453 Richard Myers, HAIB 471e84dd2a02d58a22a295c8e136c808 https://www.encodeproject.org/files/ENCFF001UPP/@@download/ENCFF001UPP.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UPQ bed broadPeak peaks ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 1 183978 Richard Myers, HAIB a0cbbbd45c618952be3cdaad1a51083c https://www.encodeproject.org/files/ENCFF001UPQ/@@download/ENCFF001UPQ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QXM bam alignments ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYA 1800900486 Richard Myers, HAIB 7b8463d510c1f331ae3fdfb314b8fbe9 https://www.encodeproject.org/files/ENCFF000QXM/@@download/ENCFF000QXM.bam hg19 released biological replicates with identical biosample ENCFF000QXO bigBed broadPeak peaks ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPB 1107866 Richard Myers, HAIB f61e46c5262539f93f4809145afb17b7 https://www.encodeproject.org/files/ENCFF000QXO/@@download/ENCFF000QXO.bigBed hg19 released biological replicates with identical biosample ENCFF000QXP bigBed broadPeak peaks ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPC 384517 Richard Myers, HAIB b395cd0b9eb5d2255c3adf8cfb047494 https://www.encodeproject.org/files/ENCFF000QXP/@@download/ENCFF000QXP.bigBed hg19 released biological replicates with identical biosample ENCFF000QXQ bam alignments ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QYD 1504764040 Richard Myers, HAIB 10d3853074e18fcb666ea9253ed20708 https://www.encodeproject.org/files/ENCFF000QXQ/@@download/ENCFF000QXQ.bam hg19 released biological replicates with identical biosample ENCFF000QXS bigWig raw signal ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 232767208 Richard Myers, HAIB 9fe65f1a5023887c42e62279518798ca https://www.encodeproject.org/files/ENCFF000QXS/@@download/ENCFF000QXS.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QXT bigWig raw signal ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 127985660 Richard Myers, HAIB f329821de1e811a92dddc9364e33477e https://www.encodeproject.org/files/ENCFF000QXT/@@download/ENCFF000QXT.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QYA fastq reads ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1829206478 Richard Myers, HAIB d73caec8fdf324605265de674299cde7 https://www.encodeproject.org/files/ENCFF000QYA/@@download/ENCFF000QYA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF000QYD fastq reads ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1629193839 Richard Myers, HAIB 12e6a3c7cb4cb0329a63338868eb54fa https://www.encodeproject.org/files/ENCFF000QYD/@@download/ENCFF000QYD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF001UPB bed broadPeak peaks ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 1 582746 Richard Myers, HAIB 3142c876f02caf264e878245a74c629e https://www.encodeproject.org/files/ENCFF001UPB/@@download/ENCFF001UPB.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPC bed broadPeak peaks ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 1 179386 Richard Myers, HAIB 76618c260c9556c8784da24d2a24b44c https://www.encodeproject.org/files/ENCFF001UPC/@@download/ENCFF001UPC.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XJH bam alignments ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XJM 331809904 Michael Snyder, Stanford fe87964b906062bdc15ac5e59836e381 https://www.encodeproject.org/files/ENCFF000XJH/@@download/ENCFF000XJH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XJI bigBed narrowPeak peaks ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIZ 1635593 Michael Snyder, Stanford 3ac2a1cc0b0e11befbdd14a2677cfcad https://www.encodeproject.org/files/ENCFF000XJI/@@download/ENCFF000XJI.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XJJ bam alignments ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XJN 309168720 Michael Snyder, Stanford 6bcfacf1376dcdafb643bf5654e81e49 https://www.encodeproject.org/files/ENCFF000XJJ/@@download/ENCFF000XJJ.bam hg19 released low read length biological replicates with identical biosample ENCFF000XJK bigWig signal ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 239231324 Michael Snyder, Stanford 2e513d1f543eed5c8dbbbf3b7cbfd98d https://www.encodeproject.org/files/ENCFF000XJK/@@download/ENCFF000XJK.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XJM fastq reads ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1028788809 Michael Snyder, Stanford 28e877e01f36cf170dcb4e9084969254 https://www.encodeproject.org/files/ENCFF000XJM/@@download/ENCFF000XJM.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XJN fastq reads ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1094279649 Michael Snyder, Stanford b7bb312b3ff76f123a644a151f0e5847 https://www.encodeproject.org/files/ENCFF000XJN/@@download/ENCFF000XJN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VIZ bed narrowPeak peaks ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 592897 Michael Snyder, Stanford 03318fdfd18a02ac7c08e995f78ab0a2 https://www.encodeproject.org/files/ENCFF001VIZ/@@download/ENCFF001VIZ.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CSX bed narrowPeak optimal idr thresholded peaks ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 609315 ENCODE Consortium Analysis Working Group 11543569f44a558a29a45baff1a62ddf https://www.encodeproject.org/files/ENCFF002CSX/@@download/ENCFF002CSX.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF320MYL bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSX 1346791 ENCODE Consortium fd998531b6a1c28e33b61138355048f8 https://www.encodeproject.org/files/ENCFF320MYL/@@download/ENCFF320MYL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF703TVC fastq reads ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF826QIL 5816991544 Michael Snyder, Stanford af94587730e60f4a3ec877f69fd5ffcf SRA:SRR6213043 https://www.encodeproject.org/files/ENCFF703TVC/@@download/ENCFF703TVC.fastq.gz Illumina HiSeq 4000 /files/ENCFF319YKD/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF826QIL fastq reads ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF703TVC 6024346547 Michael Snyder, Stanford 9ba9291382e58504fe9456a2e7e742bd SRA:SRR6213043 https://www.encodeproject.org/files/ENCFF826QIL/@@download/ENCFF826QIL.fastq.gz Illumina HiSeq 4000 /files/ENCFF687OGN/ released mild to moderate bottlenecking, antibody characterized with exemption ENCFF672MWD bam unfiltered alignments ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF703TVC, ENCFF807MUK, ENCFF826QIL 10796111691 ENCODE Processing Pipeline f52cbb3540513b7ef7b15ba18965cc0d https://www.encodeproject.org/files/ENCFF672MWD/@@download/ENCFF672MWD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF672KVJ bam unfiltered alignments ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF703TVC, ENCFF826QIL 10800347933 ENCODE Processing Pipeline d1cbb65efa6c119d7ce6f042a72216d4 https://www.encodeproject.org/files/ENCFF672KVJ/@@download/ENCFF672KVJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF446IZO bam alignments ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF703TVC, ENCFF807MUK, ENCFF826QIL 7765627931 ENCODE Processing Pipeline 9ceb0ea4ad6df2f2fdb0189256020750 https://www.encodeproject.org/files/ENCFF446IZO/@@download/ENCFF446IZO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF863KQI bam alignments ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF703TVC, ENCFF826QIL 7780943440 ENCODE Processing Pipeline 4afbc8996cc68badb40d57bd8cf5f73a https://www.encodeproject.org/files/ENCFF863KQI/@@download/ENCFF863KQI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF223CAE bigWig signal p-value ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF831EFP, ENCFF863KQI 1545519521 ENCODE Processing Pipeline cd9cc5cc250b1ccea22b32afdbdfa974 https://www.encodeproject.org/files/ENCFF223CAE/@@download/ENCFF223CAE.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF592DIB bigWig signal p-value ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF446IZO, ENCFF473HRH 1537853985 ENCODE Processing Pipeline 6aa5ad51a5f3854b45a470f4c0f3e731 https://www.encodeproject.org/files/ENCFF592DIB/@@download/ENCFF592DIB.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF576AFZ bigWig fold change over control ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF446IZO, ENCFF473HRH 1884997998 ENCODE Processing Pipeline 39dd967d826b1fccb002ed2c4585bb32 https://www.encodeproject.org/files/ENCFF576AFZ/@@download/ENCFF576AFZ.bigWig hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF313WYX bed narrowPeak peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF831EFP, ENCFF863KQI 7181183 ENCODE Processing Pipeline a9fa7bef4dfe4916266a7fcf2a0c757a https://www.encodeproject.org/files/ENCFF313WYX/@@download/ENCFF313WYX.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF458VHN bigWig fold change over control ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF831EFP, ENCFF863KQI 1887709047 ENCODE Processing Pipeline 428433793f64fbe0d6a7f2cfcb8482ea https://www.encodeproject.org/files/ENCFF458VHN/@@download/ENCFF458VHN.bigWig GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF419VCX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF628UBC 1404563 ENCODE Processing Pipeline 1df97fe38f6b1fc855a0ad993f7fcca2 https://www.encodeproject.org/files/ENCFF419VCX/@@download/ENCFF419VCX.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF296AFJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF313WYX, ENCFF419RSJ 637299 ENCODE Processing Pipeline c178eef48f9974d1dd43a9e5e4d8975e https://www.encodeproject.org/files/ENCFF296AFJ/@@download/ENCFF296AFJ.bed.gz GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF283PGM bigBed narrowPeak peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF313WYX 13062881 ENCODE Processing Pipeline 879bf2bd9cf0d0bb6e397d5a7173f64a https://www.encodeproject.org/files/ENCFF283PGM/@@download/ENCFF283PGM.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF628UBC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF446QIR 642962 ENCODE Processing Pipeline f1c7df645395bd4460839c6a90100a29 https://www.encodeproject.org/files/ENCFF628UBC/@@download/ENCFF628UBC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF446QIR bed narrowPeak peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF446IZO, ENCFF473HRH 7220208 ENCODE Processing Pipeline 32b8d90c860e6c0bc5ca6a854244b5d7 https://www.encodeproject.org/files/ENCFF446QIR/@@download/ENCFF446QIR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF503WYG bigBed narrowPeak peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF446QIR 13106595 ENCODE Processing Pipeline 16664ac769a0f1ab539a76883c9e6bc9 https://www.encodeproject.org/files/ENCFF503WYG/@@download/ENCFF503WYG.bigBed hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF147LNZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF296AFJ 1395138 ENCODE Processing Pipeline 5583c3859f493c1814705e23aeda2716 https://www.encodeproject.org/files/ENCFF147LNZ/@@download/ENCFF147LNZ.bigBed GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000ZPP bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZQF 492016590 Peggy Farnham, USC 2abd3cadf976f95c77b46a4ec3e14847 https://www.encodeproject.org/files/ENCFF000ZPP/@@download/ENCFF000ZPP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZPQ bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQV 2650842 Peggy Farnham, USC d03e10b8b326b8affaf225394d11d763 https://www.encodeproject.org/files/ENCFF000ZPQ/@@download/ENCFF000ZPQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZPR bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZQX 793005377 Peggy Farnham, USC 46a7bc137d4a3902a685df4e45b6754d https://www.encodeproject.org/files/ENCFF000ZPR/@@download/ENCFF000ZPR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZPS bigWig signal ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 437138936 Peggy Farnham, USC 7a1e6325bcb6ae4b89847da207590cbe https://www.encodeproject.org/files/ENCFF000ZPS/@@download/ENCFF000ZPS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000ZQF fastq reads ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 981608528 Peggy Farnham, USC 8567db9922346b8e4c6249968447448b https://www.encodeproject.org/files/ENCFF000ZQF/@@download/ENCFF000ZQF.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZSI/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZQX fastq reads ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1780311040 Peggy Farnham, USC 3ee98f3b97e3d3778b97e80ccb66bb1d https://www.encodeproject.org/files/ENCFF000ZQX/@@download/ENCFF000ZQX.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZSI/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001VQV bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1013929 Peggy Farnham, USC 4641819dcd03472c7639bdb01bff0e5e https://www.encodeproject.org/files/ENCFF001VQV/@@download/ENCFF001VQV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CZZ bed narrowPeak optimal idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 780304 ENCODE Consortium Analysis Working Group 4aa5c42a6ba3fff0bc0e0e15e8662518 https://www.encodeproject.org/files/ENCFF002CZZ/@@download/ENCFF002CZZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF680MNQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZZ 1813947 ENCODE Consortium c532dbd35b98f58e82340e2d43506680 https://www.encodeproject.org/files/ENCFF680MNQ/@@download/ENCFF680MNQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF354VOK bam unfiltered alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQF, ENCFF643CGH 1163312399 ENCODE Processing Pipeline 1dceeb72a10378d9f33ddb2c295cd383 https://www.encodeproject.org/files/ENCFF354VOK/@@download/ENCFF354VOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF658RFI bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQF, ENCFF643CGH 685459745 ENCODE Processing Pipeline df76a43fa63f2838506f4da9e1168cc5 https://www.encodeproject.org/files/ENCFF658RFI/@@download/ENCFF658RFI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF823FPK bam unfiltered alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZQX, ENCFF643CGH 2087148072 ENCODE Processing Pipeline 4b65673b643eee5296d24c6ee23db13b https://www.encodeproject.org/files/ENCFF823FPK/@@download/ENCFF823FPK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF330EUW bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZQX, ENCFF643CGH 791828065 ENCODE Processing Pipeline 81a0004cff0edf9cc53145a7e7d2bef0 https://www.encodeproject.org/files/ENCFF330EUW/@@download/ENCFF330EUW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF334FFC bam unfiltered alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQF, ENCFF807MUK 1160683537 ENCODE Processing Pipeline c1559d8bb616df82be237d6fe33e2fca https://www.encodeproject.org/files/ENCFF334FFC/@@download/ENCFF334FFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF325HRK bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQF, ENCFF807MUK 685655117 ENCODE Processing Pipeline 9c1d3015ff4a8af4ac6c699e4f1954e2 https://www.encodeproject.org/files/ENCFF325HRK/@@download/ENCFF325HRK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF826FNF bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZQX, ENCFF807MUK 791982955 ENCODE Processing Pipeline 55b0b3a46cae54c2ea20aca97b77428e https://www.encodeproject.org/files/ENCFF826FNF/@@download/ENCFF826FNF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF967ORA bam unfiltered alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZQX, ENCFF807MUK 2076614897 ENCODE Processing Pipeline e1fe1d3a582d18d7f04c2966336c0156 https://www.encodeproject.org/files/ENCFF967ORA/@@download/ENCFF967ORA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF865GLB bigWig signal p-value ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF530TVV, ENCFF658RFI 485061651 ENCODE Processing Pipeline 4de4c2a8d7d184f3aa99b0647da55869 https://www.encodeproject.org/files/ENCFF865GLB/@@download/ENCFF865GLB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF866EMS bigWig signal p-value ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF330EUW, ENCFF530TVV 542179346 ENCODE Processing Pipeline 83270ab869fa198b234240a1a87a698c https://www.encodeproject.org/files/ENCFF866EMS/@@download/ENCFF866EMS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF099JBR bigWig signal p-value ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF330EUW, ENCFF530TVV, ENCFF658RFI 732075442 ENCODE Processing Pipeline 9f33a22d8c3a2308361f00ccae52190b https://www.encodeproject.org/files/ENCFF099JBR/@@download/ENCFF099JBR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF825SVZ bigWig fold change over control ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF330EUW, ENCFF530TVV 496692611 ENCODE Processing Pipeline 10b7cada2e3a982d27b5850f39748a9f https://www.encodeproject.org/files/ENCFF825SVZ/@@download/ENCFF825SVZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF914TMX bigWig fold change over control ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF530TVV, ENCFF658RFI 454315632 ENCODE Processing Pipeline d6105fb4838b3803a5a1d832a73f9607 https://www.encodeproject.org/files/ENCFF914TMX/@@download/ENCFF914TMX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF295BOZ bigWig fold change over control ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF330EUW, ENCFF530TVV, ENCFF658RFI 752846702 ENCODE Processing Pipeline 4b4e126d843fa28ed8e1e1f97e3218d8 https://www.encodeproject.org/files/ENCFF295BOZ/@@download/ENCFF295BOZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF254FIM bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF330EUW, ENCFF530TVV 5576479 ENCODE Processing Pipeline ca939a156439815a8a523d30381845c5 https://www.encodeproject.org/files/ENCFF254FIM/@@download/ENCFF254FIM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF778DVY bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF530TVV, ENCFF658RFI 5947674 ENCODE Processing Pipeline 0d436e3eb48a9fe744b62c4752e0e148 https://www.encodeproject.org/files/ENCFF778DVY/@@download/ENCFF778DVY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF703EAJ bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF254FIM 11337226 ENCODE Processing Pipeline 4ec0b21dc7e7343ea247b4df91a414b6 https://www.encodeproject.org/files/ENCFF703EAJ/@@download/ENCFF703EAJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF713KBN bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF951MPF 13546886 ENCODE Processing Pipeline 81cf3518dbb00a595b500472be6b2dd9 https://www.encodeproject.org/files/ENCFF713KBN/@@download/ENCFF713KBN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF951MPF bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF330EUW, ENCFF530TVV, ENCFF658RFI 6296778 ENCODE Processing Pipeline c082ba8fbcb4be8fdb4bc56e5ef92886 https://www.encodeproject.org/files/ENCFF951MPF/@@download/ENCFF951MPF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF145JUM bigBed narrowPeak conservative idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF553BNV 832464 ENCODE Processing Pipeline cac44911d7dc598ca71118adff985149 https://www.encodeproject.org/files/ENCFF145JUM/@@download/ENCFF145JUM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF064YWN bed narrowPeak optimal idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF254FIM, ENCFF419RSJ, ENCFF778DVY, ENCFF951MPF 595337 ENCODE Processing Pipeline 28b9dbae685d1be9848af5dddb85af58 https://www.encodeproject.org/files/ENCFF064YWN/@@download/ENCFF064YWN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF862RDQ bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF778DVY 13306870 ENCODE Processing Pipeline 60ab8cbbd50fdd3c36fa40a987a62e17 https://www.encodeproject.org/files/ENCFF862RDQ/@@download/ENCFF862RDQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF553BNV bed narrowPeak conservative idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF254FIM, ENCFF419RSJ, ENCFF778DVY, ENCFF951MPF 469890 ENCODE Processing Pipeline ac8ac83f850afd7f0e713a212ac055ed https://www.encodeproject.org/files/ENCFF553BNV/@@download/ENCFF553BNV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF649SQP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF064YWN 1000631 ENCODE Processing Pipeline 76e59a74c2b7c28460ff1ce363c04a35 https://www.encodeproject.org/files/ENCFF649SQP/@@download/ENCFF649SQP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF338FRP bigWig signal p-value ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF826FNF 532727919 ENCODE Processing Pipeline 95059cc6def9cf5cc57b4fbb1eafb712 https://www.encodeproject.org/files/ENCFF338FRP/@@download/ENCFF338FRP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF632UBV bigWig fold change over control ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF826FNF 496810207 ENCODE Processing Pipeline cd390b4ffa1ac972b9264017b1c4d25d https://www.encodeproject.org/files/ENCFF632UBV/@@download/ENCFF632UBV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF732RZE bigWig signal p-value ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325HRK, ENCFF610BER, ENCFF826FNF 742633609 ENCODE Processing Pipeline 8c919c67d49516cfbaf6b725c7e9785c https://www.encodeproject.org/files/ENCFF732RZE/@@download/ENCFF732RZE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF170CHF bigWig fold change over control ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325HRK, ENCFF610BER 452770446 ENCODE Processing Pipeline 382bbf3b383f8d9f66eea6d35a3ef7f8 https://www.encodeproject.org/files/ENCFF170CHF/@@download/ENCFF170CHF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF966REE bigWig signal p-value ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325HRK, ENCFF610BER 557214928 ENCODE Processing Pipeline fd8ca088127312597fb4a22dce875b84 https://www.encodeproject.org/files/ENCFF966REE/@@download/ENCFF966REE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF427YLR bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF770MLZ 11333490 ENCODE Processing Pipeline 09941b03a374166dcd7fd268466deb96 https://www.encodeproject.org/files/ENCFF427YLR/@@download/ENCFF427YLR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF770MLZ bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF826FNF 5575113 ENCODE Processing Pipeline 25f99e416f6c1f21581078ff0309cab0 https://www.encodeproject.org/files/ENCFF770MLZ/@@download/ENCFF770MLZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF589CIG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF220YOA 991275 ENCODE Processing Pipeline f8dbf2e8d7cc9b02a7564f5021ff9291 https://www.encodeproject.org/files/ENCFF589CIG/@@download/ENCFF589CIG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF902UNH bigWig fold change over control ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325HRK, ENCFF610BER, ENCFF826FNF 751602300 ENCODE Processing Pipeline 8bb76ae6f6e2d96ed6e9ead2bf7f3e6c https://www.encodeproject.org/files/ENCFF902UNH/@@download/ENCFF902UNH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF086NRZ bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325HRK, ENCFF610BER 5985023 ENCODE Processing Pipeline 5106a6356214e15fd438028efd958bd8 https://www.encodeproject.org/files/ENCFF086NRZ/@@download/ENCFF086NRZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF325FPK bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325HRK, ENCFF610BER, ENCFF826FNF 6297567 ENCODE Processing Pipeline 651a88c84de85914d84aee9b8597dd83 https://www.encodeproject.org/files/ENCFF325FPK/@@download/ENCFF325FPK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF150EDY bed narrowPeak conservative idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF086NRZ, ENCFF325FPK, ENCFF770MLZ 468587 ENCODE Processing Pipeline 3cd789e37530de747e1b614a586bda91 https://www.encodeproject.org/files/ENCFF150EDY/@@download/ENCFF150EDY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF207NTV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF150EDY 830715 ENCODE Processing Pipeline 4521e1ce8489403dc37403863d86b25b https://www.encodeproject.org/files/ENCFF207NTV/@@download/ENCFF207NTV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF220YOA bed narrowPeak optimal idr thresholded peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF086NRZ, ENCFF325FPK, ENCFF770MLZ 588315 ENCODE Processing Pipeline 79a450617ab593291997e806ddec83f4 https://www.encodeproject.org/files/ENCFF220YOA/@@download/ENCFF220YOA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF609UKQ bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF086NRZ 13306255 ENCODE Processing Pipeline 7189e22ef53b9fb75af005fed2bdce5c https://www.encodeproject.org/files/ENCFF609UKQ/@@download/ENCFF609UKQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF603PCZ bigBed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325FPK 13541930 ENCODE Processing Pipeline bd6d16c93400a2f252a98de30bb0b86f https://www.encodeproject.org/files/ENCFF603PCZ/@@download/ENCFF603PCZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000AZM bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 1 1016250515 Bradley Bernstein, Broad 1346f372dd0ec4ad691ba001ef8e8a4b https://www.encodeproject.org/files/ENCFF000AZM/@@download/ENCFF000AZM.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, sequencing runs labeled as technical replicates ENCFF000AZN bigBed broadPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SVO 4099186 Bradley Bernstein, Broad 6b0dec9ceeb310dbe25e8be9b4d0b29a https://www.encodeproject.org/files/ENCFF000AZN/@@download/ENCFF000AZN.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF000AZP bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 2 1387021337 Bradley Bernstein, Broad d58e977635b6ac865ce6c3a407703b50 https://www.encodeproject.org/files/ENCFF000AZP/@@download/ENCFF000AZP.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, sequencing runs labeled as technical replicates ENCFF000AZQ bigWig signal ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 487499254 Bradley Bernstein, Broad 25462196727673f1715061dfd652d118 https://www.encodeproject.org/files/ENCFF000AZQ/@@download/ENCFF000AZQ.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, sequencing runs labeled as technical replicates ENCFF001SVO bed broadPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2558486 Bradley Bernstein, Broad 656882b08c30b2f0df66405657ebac59 https://www.encodeproject.org/files/ENCFF001SVO/@@download/ENCFF001SVO.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, sequencing runs labeled as technical replicates ENCFF002CDV bed narrowPeak optimal idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 387565 ENCODE Consortium Analysis Working Group 762dfc6fd710b0203a5aa944ce4fffc6 https://www.encodeproject.org/files/ENCFF002CDV/@@download/ENCFF002CDV.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth missing derived_from, sequencing runs labeled as technical replicates ENCFF344PNV bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CDV 996643 ENCODE Consortium 33c8ca77eee5a43b9c65d28fe8d908ad https://www.encodeproject.org/files/ENCFF344PNV/@@download/ENCFF344PNV.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF279SFM fastq reads ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 962532945 Bradley Bernstein, Broad 28bf8a080572bf7e0f6d9dffcbcbf687 https://www.encodeproject.org/files/ENCFF279SFM/@@download/ENCFF279SFM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF720HOL fastq reads ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1489452393 Bradley Bernstein, Broad e41a42c51aa53d9d16dd4052aba019e3 https://www.encodeproject.org/files/ENCFF720HOL/@@download/ENCFF720HOL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF018QOY bam unfiltered alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF720HOL 1934829707 ENCODE Processing Pipeline 0e3496943cdb912b2190cdf00106f66b https://www.encodeproject.org/files/ENCFF018QOY/@@download/ENCFF018QOY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF690UOA bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF720HOL, ENCFF807MUK 995382331 ENCODE Processing Pipeline 97d0c2d6417c95c2c0f9ee67e9b1730a https://www.encodeproject.org/files/ENCFF690UOA/@@download/ENCFF690UOA.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF987WSM bam unfiltered alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF279SFM, ENCFF807MUK 1254725369 ENCODE Processing Pipeline 3b6d53a02c1220c828e0dd3adb8b6311 https://www.encodeproject.org/files/ENCFF987WSM/@@download/ENCFF987WSM.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF419GSQ bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF279SFM, ENCFF807MUK 476927114 ENCODE Processing Pipeline a91aafb3e343409593e2efbcf68dae46 https://www.encodeproject.org/files/ENCFF419GSQ/@@download/ENCFF419GSQ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF155VVC bam unfiltered alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF720HOL, ENCFF807MUK 1926850229 ENCODE Processing Pipeline b39629fafcf37b651930912b5ae09f8d https://www.encodeproject.org/files/ENCFF155VVC/@@download/ENCFF155VVC.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF074CHR bam unfiltered alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF279SFM, ENCFF643CGH 1259042414 ENCODE Processing Pipeline f865ed808d2a44e8a0d8e9f9bb37f83e https://www.encodeproject.org/files/ENCFF074CHR/@@download/ENCFF074CHR.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF195XAG bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF279SFM, ENCFF643CGH 476550551 ENCODE Processing Pipeline 0d21f2ba9f156a263f10d65cba86884a https://www.encodeproject.org/files/ENCFF195XAG/@@download/ENCFF195XAG.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF491ABD bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF720HOL 995039568 ENCODE Processing Pipeline 910994a10d3af1e7b11798d7b8153c80 https://www.encodeproject.org/files/ENCFF491ABD/@@download/ENCFF491ABD.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF864GGK bigWig signal p-value ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF491ABD 538655365 ENCODE Processing Pipeline a96f7aaae47823565924389934d0c9ea https://www.encodeproject.org/files/ENCFF864GGK/@@download/ENCFF864GGK.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF018WLT bigWig signal p-value ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF690UOA, ENCFF727XHW 632182410 ENCODE Processing Pipeline 76e598cf2257057d9307468ab44de6e0 https://www.encodeproject.org/files/ENCFF018WLT/@@download/ENCFF018WLT.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF158MXS bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF491ABD 5647625 ENCODE Processing Pipeline 09567b760aa9ebf2bc30a7e762859996 https://www.encodeproject.org/files/ENCFF158MXS/@@download/ENCFF158MXS.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF485HWP bigWig fold change over control ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF491ABD 419514546 ENCODE Processing Pipeline e71e1f47596764e8bbfeabb77048e314 https://www.encodeproject.org/files/ENCFF485HWP/@@download/ENCFF485HWP.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF696PQE bigWig signal p-value ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF195XAG, ENCFF491ABD 647442930 ENCODE Processing Pipeline 80692fe7c33e9a6f7b00a5a2b4f4891a https://www.encodeproject.org/files/ENCFF696PQE/@@download/ENCFF696PQE.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF291EXO bigWig signal p-value ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419GSQ, ENCFF690UOA, ENCFF727XHW 647841969 ENCODE Processing Pipeline 6a97a8a30e7d254121414e9c34725ac2 https://www.encodeproject.org/files/ENCFF291EXO/@@download/ENCFF291EXO.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF692MWE bigWig fold change over control ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF195XAG 249624998 ENCODE Processing Pipeline a996fcbe6c4e634e49e3a5dc46eca2dc https://www.encodeproject.org/files/ENCFF692MWE/@@download/ENCFF692MWE.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF497ULZ bigWig fold change over control ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF419GSQ, ENCFF727XHW 249935645 ENCODE Processing Pipeline 641f48cbdfbe7eceabad846965a67324 https://www.encodeproject.org/files/ENCFF497ULZ/@@download/ENCFF497ULZ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF308LUA bigWig fold change over control ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF690UOA, ENCFF727XHW 421525538 ENCODE Processing Pipeline 366d0cca1a3060c98fb32fc08c7b4584 https://www.encodeproject.org/files/ENCFF308LUA/@@download/ENCFF308LUA.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF015NIC bigWig signal p-value ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF419GSQ, ENCFF727XHW 433220712 ENCODE Processing Pipeline c736eb070d773080d4f3ddb7ff208baa https://www.encodeproject.org/files/ENCFF015NIC/@@download/ENCFF015NIC.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF580ZZC bigWig signal p-value ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF195XAG 444275610 ENCODE Processing Pipeline 30ce7756fce8fe4e69d1c945eecb86f6 https://www.encodeproject.org/files/ENCFF580ZZC/@@download/ENCFF580ZZC.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF683QPR bigWig fold change over control ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419GSQ, ENCFF690UOA, ENCFF727XHW 607933553 ENCODE Processing Pipeline af4523082d0ee686f192a1a0f9130333 https://www.encodeproject.org/files/ENCFF683QPR/@@download/ENCFF683QPR.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF318SWC bigBed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF158MXS 13356662 ENCODE Processing Pipeline b75eafc43839dafefc9cf7ecd6aaaa28 https://www.encodeproject.org/files/ENCFF318SWC/@@download/ENCFF318SWC.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF918XVT bigBed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF715JKT 13074445 ENCODE Processing Pipeline 0cbb0f2e5b1b2bdc76d01ec8fb6b3737 https://www.encodeproject.org/files/ENCFF918XVT/@@download/ENCFF918XVT.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF076ZMU bigWig fold change over control ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF195XAG, ENCFF491ABD 602392798 ENCODE Processing Pipeline f27f1081cb7e2a2bb2bca1920d12ceca https://www.encodeproject.org/files/ENCFF076ZMU/@@download/ENCFF076ZMU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF715JKT bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF419GSQ, ENCFF727XHW 5964812 ENCODE Processing Pipeline d1b15922d8591f3e82d7f13a3289accd https://www.encodeproject.org/files/ENCFF715JKT/@@download/ENCFF715JKT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF918PUO bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419GSQ, ENCFF690UOA, ENCFF727XHW 6649306 ENCODE Processing Pipeline d4c56c5fcb69a477b4fa51055df8bd57 https://www.encodeproject.org/files/ENCFF918PUO/@@download/ENCFF918PUO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF943OOS bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF195XAG, ENCFF491ABD 6648223 ENCODE Processing Pipeline 9d27c01c044e6ffdee6917882ccab592 https://www.encodeproject.org/files/ENCFF943OOS/@@download/ENCFF943OOS.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF146LVZ bigBed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF226ETR 13087297 ENCODE Processing Pipeline 4eaf8da41bc6ffb3c6ed0586c2325185 https://www.encodeproject.org/files/ENCFF146LVZ/@@download/ENCFF146LVZ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF486XEG bigBed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF943OOS 13070012 ENCODE Processing Pipeline 5f32a769899544712bec5e3a42accfea https://www.encodeproject.org/files/ENCFF486XEG/@@download/ENCFF486XEG.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF977LNV bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF690UOA, ENCFF727XHW 5527818 ENCODE Processing Pipeline 2d3326f1eccc07487d950d40a23e21dd https://www.encodeproject.org/files/ENCFF977LNV/@@download/ENCFF977LNV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF135DOZ bed narrowPeak optimal idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF715JKT, ENCFF918PUO, ENCFF977LNV 422896 ENCODE Processing Pipeline fd6e3bb3e059f8ffb43f8316d044a984 https://www.encodeproject.org/files/ENCFF135DOZ/@@download/ENCFF135DOZ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF807OGM bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF607WCG 985235 ENCODE Processing Pipeline b0c15e5213eb0d075f8f75c78b1357ad https://www.encodeproject.org/files/ENCFF807OGM/@@download/ENCFF807OGM.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF226ETR bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF195XAG 5969326 ENCODE Processing Pipeline f79a73473604cf1630a6ea78097f0ad1 https://www.encodeproject.org/files/ENCFF226ETR/@@download/ENCFF226ETR.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF733FVT bigBed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF977LNV 13325631 ENCODE Processing Pipeline f0f4d4e56cab81f8a6500f7b03c5c580 https://www.encodeproject.org/files/ENCFF733FVT/@@download/ENCFF733FVT.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF419ZDU bed narrowPeak conservative idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF715JKT, ENCFF918PUO, ENCFF977LNV 364288 ENCODE Processing Pipeline d7e37f12d50a7846d7c51d19b169f2a6 https://www.encodeproject.org/files/ENCFF419ZDU/@@download/ENCFF419ZDU.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF390RDB bigBed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF918PUO 13067935 ENCODE Processing Pipeline e1366d8a2196ea04b1bb1fffce6bf91c https://www.encodeproject.org/files/ENCFF390RDB/@@download/ENCFF390RDB.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF967SJM bed narrowPeak conservative idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF158MXS, ENCFF226ETR, ENCFF419RSJ, ENCFF943OOS 365702 ENCODE Processing Pipeline 990479c1ff2c6f8f85f66873fd4d7c2d https://www.encodeproject.org/files/ENCFF967SJM/@@download/ENCFF967SJM.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF503NMY bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF135DOZ 982511 ENCODE Processing Pipeline 90c1c0d3e020acc926ad603bd2cc4d89 https://www.encodeproject.org/files/ENCFF503NMY/@@download/ENCFF503NMY.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF424QQX bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF967SJM 880228 ENCODE Processing Pipeline 09318ce180e7a7c1451dd46c6d6e338c https://www.encodeproject.org/files/ENCFF424QQX/@@download/ENCFF424QQX.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF819KJW bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF419ZDU 878005 ENCODE Processing Pipeline 765678972d40f4166953914c0d5c6822 https://www.encodeproject.org/files/ENCFF819KJW/@@download/ENCFF819KJW.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF607WCG bed narrowPeak optimal idr thresholded peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF158MXS, ENCFF226ETR, ENCFF419RSJ, ENCFF943OOS 423333 ENCODE Processing Pipeline 1d5d4fc00b50a874cda80b9556bfb60d https://www.encodeproject.org/files/ENCFF607WCG/@@download/ENCFF607WCG.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF000MXP bam alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000MXT 794266496 Richard Myers, HAIB 99b96be61781dca01d6d00eb863c7648 https://www.encodeproject.org/files/ENCFF000MXP/@@download/ENCFF000MXP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF000MXQ bigWig raw signal ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 1 8190462 Richard Myers, HAIB eadde13a4251d801c402b140d18b6b2b https://www.encodeproject.org/files/ENCFF000MXQ/@@download/ENCFF000MXQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment missing derived_from ENCFF000MXT fastq reads ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 766827737 Richard Myers, HAIB c1edd2d64ef1a7892017bca167f96c43 https://www.encodeproject.org/files/ENCFF000MXT/@@download/ENCFF000MXT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000MXO/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF121EED bam alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXT, ENCFF643CGH 526039184 ENCODE Processing Pipeline 5341231f099c788ae16b32bc05b0f211 https://www.encodeproject.org/files/ENCFF121EED/@@download/ENCFF121EED.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF833MCD bam unfiltered alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXT, ENCFF807MUK 953864264 ENCODE Processing Pipeline b768353d908886b7616c83c55cb78da1 https://www.encodeproject.org/files/ENCFF833MCD/@@download/ENCFF833MCD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF352UMD bam alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXT, ENCFF807MUK 526253787 ENCODE Processing Pipeline 99acbfd982e5d85fb7b005bd61cb01f7 https://www.encodeproject.org/files/ENCFF352UMD/@@download/ENCFF352UMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF254ENX bam unfiltered alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXT, ENCFF643CGH 958239392 ENCODE Processing Pipeline ab194bdca602343cf506fc998b065f80 https://www.encodeproject.org/files/ENCFF254ENX/@@download/ENCFF254ENX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF134CPX bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF001TDO, ENCFF409CPX 34663 ENCODE Processing Pipeline d18dfc734465a278540baa09b932d09d https://www.encodeproject.org/files/ENCFF134CPX/@@download/ENCFF134CPX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF650PBM bed narrowPeak peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF056OHH, ENCFF121EED 444557 ENCODE Processing Pipeline 4a018068f731cab103e9ad9afae3804d https://www.encodeproject.org/files/ENCFF650PBM/@@download/ENCFF650PBM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF795RYJ bigBed narrowPeak peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF409CPX 962312 ENCODE Processing Pipeline 6744ab649f9201981db93429e0c1175c https://www.encodeproject.org/files/ENCFF795RYJ/@@download/ENCFF795RYJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF620CWP bigBed narrowPeak peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF650PBM 956822 ENCODE Processing Pipeline 443afb8d682cc1d6f656ed67ceb53da0 https://www.encodeproject.org/files/ENCFF620CWP/@@download/ENCFF620CWP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF309UFT bigWig fold change over control ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF352UMD, ENCFF891DUU 227387080 ENCODE Processing Pipeline 0eda7536f6764c9a2d19c95737342f03 https://www.encodeproject.org/files/ENCFF309UFT/@@download/ENCFF309UFT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF409CPX bed narrowPeak peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF352UMD, ENCFF891DUU 450467 ENCODE Processing Pipeline 2f2367d2512c5c5c551356ee9c8753f6 https://www.encodeproject.org/files/ENCFF409CPX/@@download/ENCFF409CPX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF378GSO bigWig signal p-value ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF056OHH, ENCFF121EED 253972659 ENCODE Processing Pipeline e6abdb85c1b3004bb3358ed12c0f9155 https://www.encodeproject.org/files/ENCFF378GSO/@@download/ENCFF378GSO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF637ZNN bigWig signal p-value ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF352UMD, ENCFF891DUU 254360347 ENCODE Processing Pipeline 8ffae7c2099c3122a37b5cb185a03dfc https://www.encodeproject.org/files/ENCFF637ZNN/@@download/ENCFF637ZNN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF156DQT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF134CPX 95812 ENCODE Processing Pipeline 0db8f9a12d3312579028d101686e0c44 https://www.encodeproject.org/files/ENCFF156DQT/@@download/ENCFF156DQT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF655WPA bigWig fold change over control ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF056OHH, ENCFF121EED 226670856 ENCODE Processing Pipeline ba4afdcd959f2b6b3a018d320918a0a1 https://www.encodeproject.org/files/ENCFF655WPA/@@download/ENCFF655WPA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF713HTI bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF186ZET 119410 ENCODE Processing Pipeline 9ecbc5596d4dd78cfe13c460fe86bc0a https://www.encodeproject.org/files/ENCFF713HTI/@@download/ENCFF713HTI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF186ZET bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF419RSJ, ENCFF650PBM 37915 ENCODE Processing Pipeline af5b4874f07bf098e78cbd3744b72e11 https://www.encodeproject.org/files/ENCFF186ZET/@@download/ENCFF186ZET.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF000XLA bam alignments ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XLS 568492722 Michael Snyder, Stanford 2ecf0816f4f23d390c4021472384b755 https://www.encodeproject.org/files/ENCFF000XLA/@@download/ENCFF000XLA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XLB bigBed narrowPeak peaks ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJH 3711104 Michael Snyder, Stanford 9ebc7958a713fc725ac7e1af6b57278b https://www.encodeproject.org/files/ENCFF000XLB/@@download/ENCFF000XLB.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XLC bam alignments ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XLT 682515526 Michael Snyder, Stanford 25c988404f9e52443bfdde061d99700a https://www.encodeproject.org/files/ENCFF000XLC/@@download/ENCFF000XLC.bam hg19 released low read length biological replicates with identical biosample ENCFF000XLD bigWig signal ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 462026306 Michael Snyder, Stanford ec82fbe79fe466a3e2cba28d1fe9e816 https://www.encodeproject.org/files/ENCFF000XLD/@@download/ENCFF000XLD.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000XLS fastq reads ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1180869954 Michael Snyder, Stanford c498ce4116ee6ed132326b3ded7425c7 https://www.encodeproject.org/files/ENCFF000XLS/@@download/ENCFF000XLS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XLT fastq reads ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1591699104 Michael Snyder, Stanford 321761288e90f4f804bb8ec60cbbeb29 https://www.encodeproject.org/files/ENCFF000XLT/@@download/ENCFF000XLT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJH bed narrowPeak peaks ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1496775 Michael Snyder, Stanford 41013ec96d6195638cc7c17b7c3f0e2b https://www.encodeproject.org/files/ENCFF001VJH/@@download/ENCFF001VJH.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CTE bed narrowPeak optimal idr thresholded peaks ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 939484 ENCODE Consortium Analysis Working Group 4fbd9b20cc5b419c3086e3ca689fe9ee https://www.encodeproject.org/files/ENCFF002CTE/@@download/ENCFF002CTE.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF031FXF bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTE 2212277 ENCODE Consortium ed6689bd8c06eb3bd5bf25a0a47a00e0 https://www.encodeproject.org/files/ENCFF031FXF/@@download/ENCFF031FXF.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000AYJ bigBed broadPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SVG 1901887 Bradley Bernstein, Broad b6c3b537dfd5e6d7deb831f19ce5ad70 https://www.encodeproject.org/files/ENCFF000AYJ/@@download/ENCFF000AYJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AYK bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 1 1325699525 Bradley Bernstein, Broad 2651b5678a02d5979cf476f7f09190b4 https://www.encodeproject.org/files/ENCFF000AYK/@@download/ENCFF000AYK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from ENCFF000AYL bigWig signal ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 315977652 Bradley Bernstein, Broad c1b34373d6b880c72549f8290853c82b https://www.encodeproject.org/files/ENCFF000AYL/@@download/ENCFF000AYL.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from ENCFF000AYV fastq reads ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1573160666 Bradley Bernstein, Broad 815ab9cbab141758ebd39a3e61b15fcc https://www.encodeproject.org/files/ENCFF000AYV/@@download/ENCFF000AYV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF001SVG bed broadPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 962523 Bradley Bernstein, Broad f8914204b8a521a23b3c2cc8718638e5 https://www.encodeproject.org/files/ENCFF001SVG/@@download/ENCFF001SVG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from ENCFF524BES fastq reads ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 814705928 Bradley Bernstein, Broad 01ef30dca023c1d3d230acc0d93ae1e2 https://www.encodeproject.org/files/ENCFF524BES/@@download/ENCFF524BES.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF061TDJ bam unfiltered alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF524BES, ENCFF643CGH 1186021570 ENCODE Processing Pipeline c44f8b0f878d483278ae7a596e2d3684 https://www.encodeproject.org/files/ENCFF061TDJ/@@download/ENCFF061TDJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF831LAD bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF524BES, ENCFF643CGH 773669497 ENCODE Processing Pipeline d3a221130e38e58dbe51b13b54a05aa1 https://www.encodeproject.org/files/ENCFF831LAD/@@download/ENCFF831LAD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF256WJJ bam unfiltered alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AYV, ENCFF643CGH 1998222299 ENCODE Processing Pipeline b13a4dedab1ae9c086393cfca144c233 https://www.encodeproject.org/files/ENCFF256WJJ/@@download/ENCFF256WJJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF769PHM bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AYV, ENCFF643CGH 734788768 ENCODE Processing Pipeline a74717f1f4b4b572e0d78ffdffb4c996 https://www.encodeproject.org/files/ENCFF769PHM/@@download/ENCFF769PHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF945PYQ bam unfiltered alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF524BES, ENCFF807MUK 1180781087 ENCODE Processing Pipeline 37de75f4e74ae414451516890e82776f https://www.encodeproject.org/files/ENCFF945PYQ/@@download/ENCFF945PYQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF096SRY bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF524BES, ENCFF807MUK 774003388 ENCODE Processing Pipeline 3b2331712584edfbce6d3bb2f692eae3 https://www.encodeproject.org/files/ENCFF096SRY/@@download/ENCFF096SRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF221AEX bam unfiltered alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AYV, ENCFF807MUK 1988829943 ENCODE Processing Pipeline 2c972a46c18e5f25b18ee340074784d2 https://www.encodeproject.org/files/ENCFF221AEX/@@download/ENCFF221AEX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF461HDT bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AYV, ENCFF807MUK 735165275 ENCODE Processing Pipeline 06c20ecbdca43fe17c0ace49acedd0cd https://www.encodeproject.org/files/ENCFF461HDT/@@download/ENCFF461HDT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF343UGH bigBed narrowPeak optimal idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF468CFJ 714051 ENCODE Processing Pipeline 8364d1f40976b480e5ffd2b32807b285 https://www.encodeproject.org/files/ENCFF343UGH/@@download/ENCFF343UGH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF756FVQ bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 6346222 ENCODE Processing Pipeline a79923dae73edffa84562971f7d18b53 https://www.encodeproject.org/files/ENCFF756FVQ/@@download/ENCFF756FVQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF568MYO bigBed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF756FVQ 13239168 ENCODE Processing Pipeline 1534079b77c3c72738652ee152b57a96 https://www.encodeproject.org/files/ENCFF568MYO/@@download/ENCFF568MYO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF684AUW bigBed narrowPeak conservative idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF135BOB 555841 ENCODE Processing Pipeline 6b2b0e1a733341a23c2c20afb0c6cb5c https://www.encodeproject.org/files/ENCFF684AUW/@@download/ENCFF684AUW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF590UDN bigWig fold change over control ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 880328510 ENCODE Processing Pipeline 336920d0dd6f7492aa11b1d1ca100a28 https://www.encodeproject.org/files/ENCFF590UDN/@@download/ENCFF590UDN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF205MFQ bigWig signal p-value ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF096SRY, ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 2110768360 ENCODE Processing Pipeline 90d5b152a21b4138f52db10f3867cd40 https://www.encodeproject.org/files/ENCFF205MFQ/@@download/ENCFF205MFQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF301BGQ bigWig fold change over control ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF096SRY, ENCFF243MTV, ENCFF727XHW 1500376775 ENCODE Processing Pipeline 0280f63f14ef0bd05fe94d1b58dbf8bf https://www.encodeproject.org/files/ENCFF301BGQ/@@download/ENCFF301BGQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF036JJP bigWig signal p-value ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 1712827655 ENCODE Processing Pipeline c4e340df33458e6b7be976856a32f87a https://www.encodeproject.org/files/ENCFF036JJP/@@download/ENCFF036JJP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF327ORV bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF096SRY, ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 7128043 ENCODE Processing Pipeline 186935013e27b8d24c03c0d3b6cbf941 https://www.encodeproject.org/files/ENCFF327ORV/@@download/ENCFF327ORV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF468CFJ bed narrowPeak optimal idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF327ORV, ENCFF756FVQ, ENCFF848MDV 335244 ENCODE Processing Pipeline 88657f3ff9fbb5c3e01288866fcfba99 https://www.encodeproject.org/files/ENCFF468CFJ/@@download/ENCFF468CFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF054QFR bigWig signal p-value ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF096SRY, ENCFF243MTV, ENCFF727XHW 1916754090 ENCODE Processing Pipeline 0363e727956a0525929d417efba805c0 https://www.encodeproject.org/files/ENCFF054QFR/@@download/ENCFF054QFR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF078AIU bigBed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF327ORV 12825241 ENCODE Processing Pipeline a9b39f146aa573639c7ecaad7fcd281c https://www.encodeproject.org/files/ENCFF078AIU/@@download/ENCFF078AIU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF135BOB bed narrowPeak conservative idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF327ORV, ENCFF756FVQ, ENCFF848MDV 237815 ENCODE Processing Pipeline f996620a7cb8f1ad692bbbac48a70ff3 https://www.encodeproject.org/files/ENCFF135BOB/@@download/ENCFF135BOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF332ZCB bigWig fold change over control ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF096SRY, ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 1719374831 ENCODE Processing Pipeline 417b178fbe16f36ccfbb1b88619cf7b9 https://www.encodeproject.org/files/ENCFF332ZCB/@@download/ENCFF332ZCB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF848MDV bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF096SRY, ENCFF243MTV, ENCFF727XHW 7004524 ENCODE Processing Pipeline 99406b60cb6b4af438dfa6c7604f4d5e https://www.encodeproject.org/files/ENCFF848MDV/@@download/ENCFF848MDV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF457PIV bigBed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF848MDV 12900392 ENCODE Processing Pipeline 81ef02fa0b36841c7ea372c1b33e1681 https://www.encodeproject.org/files/ENCFF457PIV/@@download/ENCFF457PIV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF684HGL bigBed narrowPeak optimal idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF497YNJ 689623 ENCODE Processing Pipeline c69f26e684df9237f6fd603df1e6edca https://www.encodeproject.org/files/ENCFF684HGL/@@download/ENCFF684HGL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF628YHR bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF769PHM, ENCFF831LAD 7051753 ENCODE Processing Pipeline 6597cf64cd77efbdd7c6c605f22928c7 https://www.encodeproject.org/files/ENCFF628YHR/@@download/ENCFF628YHR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF885YZY bigBed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF875ARC 12939098 ENCODE Processing Pipeline cbf99ba334abd1866cdb3e97c82f7e73 https://www.encodeproject.org/files/ENCFF885YZY/@@download/ENCFF885YZY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF003AQO bigBed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF279JLG 12643232 ENCODE Processing Pipeline 4afff1bbad66f268f499d98ee107bd8c https://www.encodeproject.org/files/ENCFF003AQO/@@download/ENCFF003AQO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF375YQD bed narrowPeak conservative idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF279JLG, ENCFF419RSJ, ENCFF628YHR, ENCFF875ARC 240555 ENCODE Processing Pipeline 31ffa0fee015c07403f9cccf0d98b131 https://www.encodeproject.org/files/ENCFF375YQD/@@download/ENCFF375YQD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF192XRQ bigWig fold change over control ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF831LAD 1501237318 ENCODE Processing Pipeline 939a9db365b153c7d9a131aa5df16a0d https://www.encodeproject.org/files/ENCFF192XRQ/@@download/ENCFF192XRQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF114ACZ bigWig signal p-value ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF769PHM 1726306694 ENCODE Processing Pipeline 477b8c13ec800129966816ae4b86592b https://www.encodeproject.org/files/ENCFF114ACZ/@@download/ENCFF114ACZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF279JLG bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF831LAD 6780693 ENCODE Processing Pipeline 8f25298011473464318330e1601d7215 https://www.encodeproject.org/files/ENCFF279JLG/@@download/ENCFF279JLG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF702NGA bigBed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF628YHR 12731694 ENCODE Processing Pipeline 26c34cbf14d7cd75b485d3b62dca2f2f https://www.encodeproject.org/files/ENCFF702NGA/@@download/ENCFF702NGA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF945CZL bigBed narrowPeak conservative idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF375YQD 558593 ENCODE Processing Pipeline 024edfbf640107e38455059805d50f9b https://www.encodeproject.org/files/ENCFF945CZL/@@download/ENCFF945CZL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF290ALW bigWig fold change over control ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF769PHM 875523697 ENCODE Processing Pipeline bedd336c0a13464bf12007eaa48e629b https://www.encodeproject.org/files/ENCFF290ALW/@@download/ENCFF290ALW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF453GAG bigWig signal p-value ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF831LAD 1875295709 ENCODE Processing Pipeline ae5fbf3c59275435a39aed8ff07a1ca7 https://www.encodeproject.org/files/ENCFF453GAG/@@download/ENCFF453GAG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF723EAE bigWig signal p-value ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF769PHM, ENCFF831LAD 1976141038 ENCODE Processing Pipeline 42a067ee108d01089ea0d522ba616bb5 https://www.encodeproject.org/files/ENCFF723EAE/@@download/ENCFF723EAE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF948IYF bigWig fold change over control ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF769PHM, ENCFF831LAD 1625411192 ENCODE Processing Pipeline bca330337a4298cdc1f687c33efca0c4 https://www.encodeproject.org/files/ENCFF948IYF/@@download/ENCFF948IYF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF875ARC bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF769PHM 6037319 ENCODE Processing Pipeline 578f002e2683a09cf6b99769d52534f1 https://www.encodeproject.org/files/ENCFF875ARC/@@download/ENCFF875ARC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF497YNJ bed narrowPeak optimal idr thresholded peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF279JLG, ENCFF419RSJ, ENCFF628YHR, ENCFF875ARC 319510 ENCODE Processing Pipeline c899549e2edc5d667677c100b4908080 https://www.encodeproject.org/files/ENCFF497YNJ/@@download/ENCFF497YNJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000ZMH bam alignments ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZMN 537984244 Michael Snyder, Stanford a992e2644736b60eb2b2f8e967ddb6a0 https://www.encodeproject.org/files/ENCFF000ZMH/@@download/ENCFF000ZMH.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZMI bigBed narrowPeak peaks ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQL 3551540 Michael Snyder, Stanford a50188108f1ffb613f5bed5138925fb1 https://www.encodeproject.org/files/ENCFF000ZMI/@@download/ENCFF000ZMI.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000ZMJ bam alignments ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZMP 528035667 Michael Snyder, Stanford 9ef19f96192aa79dda36479be86cd947 https://www.encodeproject.org/files/ENCFF000ZMJ/@@download/ENCFF000ZMJ.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZML bigWig signal ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 362783329 Michael Snyder, Stanford 1878fdcd1919793035f43eaa7cddadc0 https://www.encodeproject.org/files/ENCFF000ZML/@@download/ENCFF000ZML.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000ZMN fastq reads ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1140764401 Michael Snyder, Stanford ee8a08f7082d7eefa4ce3fc8df67ebd5 https://www.encodeproject.org/files/ENCFF000ZMN/@@download/ENCFF000ZMN.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZMO/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000ZMP fastq reads ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1218636884 Michael Snyder, Stanford f1b9161af835ce318cbb6e19d6b6b63d https://www.encodeproject.org/files/ENCFF000ZMP/@@download/ENCFF000ZMP.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZMO/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VQL bed narrowPeak peaks ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1418159 Michael Snyder, Stanford a3bc344600a6babe504bb8e771cac6f2 https://www.encodeproject.org/files/ENCFF001VQL/@@download/ENCFF001VQL.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CZP bed narrowPeak optimal idr thresholded peaks ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 796018 ENCODE Consortium Analysis Working Group 5f98fed6e18417827c6df77859c1cf0e https://www.encodeproject.org/files/ENCFF002CZP/@@download/ENCFF002CZP.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF078CQU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZP 1667611 ENCODE Consortium 66fb7ba033c52f5f03690d0bcc46b004 https://www.encodeproject.org/files/ENCFF078CQU/@@download/ENCFF078CQU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000OPO bam alignments ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OQI 1401846243 Richard Myers, HAIB c8b6662444d09abca1e3d4a2f659db58 https://www.encodeproject.org/files/ENCFF000OPO/@@download/ENCFF000OPO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000OPP bigBed broadPeak peaks ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UBO 691209 Richard Myers, HAIB 4489c0b18f0e91f593cbe3421a461e0f https://www.encodeproject.org/files/ENCFF000OPP/@@download/ENCFF000OPP.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000OPQ bigBed broadPeak peaks ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UBP 732837 Richard Myers, HAIB 1e40352bac6e5b39c61394c55e5c8bb0 https://www.encodeproject.org/files/ENCFF000OPQ/@@download/ENCFF000OPQ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000OPR bam alignments ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OQD 1621150445 Richard Myers, HAIB 144eadde731fca217b161307525216f0 https://www.encodeproject.org/files/ENCFF000OPR/@@download/ENCFF000OPR.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000OPT bigWig raw signal ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 233811862 Richard Myers, HAIB 84e87f034455ed4de8304709911fb447 https://www.encodeproject.org/files/ENCFF000OPT/@@download/ENCFF000OPT.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000OPU bigWig raw signal ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 264999963 Richard Myers, HAIB 02af7b72a14d2bdea3d6daaba17e9dca https://www.encodeproject.org/files/ENCFF000OPU/@@download/ENCFF000OPU.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OQD fastq reads ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1671392289 Richard Myers, HAIB 2b3a3f729048051f50af17c10392bb7d https://www.encodeproject.org/files/ENCFF000OQD/@@download/ENCFF000OQD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OST/ released inconsistent platforms biological replicates with identical biosample ENCFF000OQI fastq reads ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1424763587 Richard Myers, HAIB 73d56049280032c4394750c9017f4d67 https://www.encodeproject.org/files/ENCFF000OQI/@@download/ENCFF000OQI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OST/ released inconsistent platforms biological replicates with identical biosample ENCFF001UBO bed broadPeak peaks ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 448723 Richard Myers, HAIB ab0bf1577d923e934228ada596e17337 https://www.encodeproject.org/files/ENCFF001UBO/@@download/ENCFF001UBO.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UBP bed broadPeak peaks ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 492348 Richard Myers, HAIB 31e25bcccbdfd6ff9646672fbdfe107e https://www.encodeproject.org/files/ENCFF001UBP/@@download/ENCFF001UBP.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000ONK bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000ONR 917482142 Richard Myers, HAIB 8ab3121c0ea78a7ffe8c4a2d80ea7cb5 https://www.encodeproject.org/files/ENCFF000ONK/@@download/ENCFF000ONK.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ONL bigBed broadPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBA 1428260 Richard Myers, HAIB 031595b86210ae0a5f0aa7b3cc5e12bf https://www.encodeproject.org/files/ENCFF000ONL/@@download/ENCFF000ONL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ONM bigBed broadPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBB 952166 Richard Myers, HAIB bb410347eca0e950eac3cf784616482d https://www.encodeproject.org/files/ENCFF000ONM/@@download/ENCFF000ONM.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ONN bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OOF 2891632176 Richard Myers, HAIB 42a46879e81fb8d2414d6a680d4b228a https://www.encodeproject.org/files/ENCFF000ONN/@@download/ENCFF000ONN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000ONO bigWig raw signal ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 47453877 Richard Myers, HAIB 5d0efb3187d5e1808c35fe0d38be2a7f https://www.encodeproject.org/files/ENCFF000ONO/@@download/ENCFF000ONO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000ONQ bigWig raw signal ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 110858628 Richard Myers, HAIB 7b8da3a60d4c81f9883b07f17aed766a https://www.encodeproject.org/files/ENCFF000ONQ/@@download/ENCFF000ONQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF000ONR fastq reads ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 898090026 Richard Myers, HAIB 45f22b30c27b3df7cfb9410bcc5bc905 https://www.encodeproject.org/files/ENCFF000ONR/@@download/ENCFF000ONR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000OOF fastq reads ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 3549258093 Richard Myers, HAIB 35851b582e4bbc6f2fb7ac0d4731293d https://www.encodeproject.org/files/ENCFF000OOF/@@download/ENCFF000OOF.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF001UBA bed broadPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 1 926307 Richard Myers, HAIB a617e93bd27850429c75bce1bd4d6c01 https://www.encodeproject.org/files/ENCFF001UBA/@@download/ENCFF001UBA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UBB bed broadPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 1 574894 Richard Myers, HAIB 972e387e912e4447b384169e691558a8 https://www.encodeproject.org/files/ENCFF001UBB/@@download/ENCFF001UBB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF002CIU bed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1097021 ENCODE Consortium Analysis Working Group 0071595b80838346905bf40e3186b251 https://www.encodeproject.org/files/ENCFF002CIU/@@download/ENCFF002CIU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample, missing derived_from missing control alignments ENCFF121SPD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIU 2359404 ENCODE Consortium cc1f40738b5a759a69edb42efd666257 https://www.encodeproject.org/files/ENCFF121SPD/@@download/ENCFF121SPD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF551FQW bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONR, ENCFF643CGH 547282482 ENCODE Processing Pipeline 25a22afde7902f357c3842b9d0c743a5 https://www.encodeproject.org/files/ENCFF551FQW/@@download/ENCFF551FQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF506MWT bam unfiltered alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONR, ENCFF643CGH 1089328301 ENCODE Processing Pipeline faee24bfe6d46fe3dea928bf3435b23e https://www.encodeproject.org/files/ENCFF506MWT/@@download/ENCFF506MWT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF397FGK bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOF, ENCFF643CGH 1953262346 ENCODE Processing Pipeline dcbcfc3224188cf5940609498bbeec5b https://www.encodeproject.org/files/ENCFF397FGK/@@download/ENCFF397FGK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF147FOR bam unfiltered alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOF, ENCFF643CGH 4291667330 ENCODE Processing Pipeline 4d5a2bac7d4609fd464bbcb48eb1da04 https://www.encodeproject.org/files/ENCFF147FOR/@@download/ENCFF147FOR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF736GTL bam unfiltered alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONR, ENCFF807MUK 1086144450 ENCODE Processing Pipeline a55ed70604ce60a72ead0ea032f6597a https://www.encodeproject.org/files/ENCFF736GTL/@@download/ENCFF736GTL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF639ACF bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONR, ENCFF807MUK 547656106 ENCODE Processing Pipeline eb541133581614e5d103e32aff6ed2d0 https://www.encodeproject.org/files/ENCFF639ACF/@@download/ENCFF639ACF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF222CWF bam unfiltered alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOF, ENCFF807MUK 4280080339 ENCODE Processing Pipeline 768ea106b32994d0afae661b703c88f0 https://www.encodeproject.org/files/ENCFF222CWF/@@download/ENCFF222CWF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF483RYF bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOF, ENCFF807MUK 1953877467 ENCODE Processing Pipeline 8c2b9a06de05ece87b81c1adbb42bf23 https://www.encodeproject.org/files/ENCFF483RYF/@@download/ENCFF483RYF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF145XHJ bigWig signal p-value ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF551FQW 488267764 ENCODE Processing Pipeline 91daa50dd4410fa7772cafed49bb74ce https://www.encodeproject.org/files/ENCFF145XHJ/@@download/ENCFF145XHJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF125JMK bigWig signal p-value ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF397FGK 563767255 ENCODE Processing Pipeline f634593a92b006463c365b94bb4557bf https://www.encodeproject.org/files/ENCFF125JMK/@@download/ENCFF125JMK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF147GRN bigWig signal p-value ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF397FGK, ENCFF551FQW 547728523 ENCODE Processing Pipeline a543d16b53a81682cf74f21a53b34f1f https://www.encodeproject.org/files/ENCFF147GRN/@@download/ENCFF147GRN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF549TOE bigWig fold change over control ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF551FQW 281306015 ENCODE Processing Pipeline 0252ae4849d40f4b2add68427f781130 https://www.encodeproject.org/files/ENCFF549TOE/@@download/ENCFF549TOE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF493IMI bigWig fold change over control ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF397FGK 724139604 ENCODE Processing Pipeline 61815f76e19df381ce202ce5f976c698 https://www.encodeproject.org/files/ENCFF493IMI/@@download/ENCFF493IMI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF917LAZ bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF397FGK 5426271 ENCODE Processing Pipeline 25a26e919376e949104a8fea0209a183 https://www.encodeproject.org/files/ENCFF917LAZ/@@download/ENCFF917LAZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF473IZV bigWig fold change over control ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF397FGK, ENCFF551FQW 884521032 ENCODE Processing Pipeline 0dee5441f8e4265d4b6a9f7cdddfb28f https://www.encodeproject.org/files/ENCFF473IZV/@@download/ENCFF473IZV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF528DYD bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF551FQW 4365851 ENCODE Processing Pipeline 70b774a9691c1e5433152bb1b26d3c92 https://www.encodeproject.org/files/ENCFF528DYD/@@download/ENCFF528DYD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF904DSP bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF397FGK, ENCFF551FQW 5604561 ENCODE Processing Pipeline b2e441a9b2f5483917f811e972c537b4 https://www.encodeproject.org/files/ENCFF904DSP/@@download/ENCFF904DSP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF409WWH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF991GTC 1253018 ENCODE Processing Pipeline 5233edf0f817cf6d7d426581c04ed79a https://www.encodeproject.org/files/ENCFF409WWH/@@download/ENCFF409WWH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF536WST bigBed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF904DSP 11607084 ENCODE Processing Pipeline 1e9a6e6b2bb060f8efd517a1fe8cd07c https://www.encodeproject.org/files/ENCFF536WST/@@download/ENCFF536WST.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF842UZW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF821AQO 1522821 ENCODE Processing Pipeline 7711af1905dd552a40d20c59cf20a342 https://www.encodeproject.org/files/ENCFF842UZW/@@download/ENCFF842UZW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF228IAW bigBed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF528DYD 8857666 ENCODE Processing Pipeline 296f621bd2af090bf66bf7155d1beb5f https://www.encodeproject.org/files/ENCFF228IAW/@@download/ENCFF228IAW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF350CFH bigBed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF917LAZ 11374081 ENCODE Processing Pipeline aec6db3a6f1746a340cb93d56b0e92eb https://www.encodeproject.org/files/ENCFF350CFH/@@download/ENCFF350CFH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF991GTC bed narrowPeak conservative idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF528DYD, ENCFF904DSP, ENCFF917LAZ 700763 ENCODE Processing Pipeline 6356e07b2db067c40ffdc3bd884d3192 https://www.encodeproject.org/files/ENCFF991GTC/@@download/ENCFF991GTC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF821AQO bed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF528DYD, ENCFF904DSP, ENCFF917LAZ 896598 ENCODE Processing Pipeline 6b8cb10006e54394256ba65597a853c4 https://www.encodeproject.org/files/ENCFF821AQO/@@download/ENCFF821AQO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF402JJK bed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF289JUZ, ENCFF722MDG, ENCFF775VDO 888822 ENCODE Processing Pipeline f1680aa6ab0504910c3a639cd354bd47 https://www.encodeproject.org/files/ENCFF402JJK/@@download/ENCFF402JJK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF722MDG bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF639ACF 4367319 ENCODE Processing Pipeline ca9c0b3ee19459d7e0f10bc791e8b4e9 https://www.encodeproject.org/files/ENCFF722MDG/@@download/ENCFF722MDG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF405JOB bigBed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF775VDO 11494715 ENCODE Processing Pipeline 9917775c9ee3177df1423564fc43a947 https://www.encodeproject.org/files/ENCFF405JOB/@@download/ENCFF405JOB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF971RSD bigBed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF289JUZ 11602175 ENCODE Processing Pipeline 16a41e990daa89c49dae8b54b973f2bc https://www.encodeproject.org/files/ENCFF971RSD/@@download/ENCFF971RSD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF065QJL bigWig signal p-value ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF639ACF 457074412 ENCODE Processing Pipeline 26f04676b54c28dd741ff4cf1e7ed010 https://www.encodeproject.org/files/ENCFF065QJL/@@download/ENCFF065QJL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF950CCT bigWig fold change over control ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF639ACF 282611789 ENCODE Processing Pipeline 25f2636cccbccfecaf8299fd5193bc37 https://www.encodeproject.org/files/ENCFF950CCT/@@download/ENCFF950CCT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF366GFS bigWig signal p-value ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF483RYF 563868109 ENCODE Processing Pipeline cf8879eb0cdfb330022417b289d4c221 https://www.encodeproject.org/files/ENCFF366GFS/@@download/ENCFF366GFS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF024EAO bigWig fold change over control ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF483RYF, ENCFF639ACF 882050502 ENCODE Processing Pipeline 40f210e764f1a6c729ac4b2743edbb7f https://www.encodeproject.org/files/ENCFF024EAO/@@download/ENCFF024EAO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF775VDO bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF483RYF 5527666 ENCODE Processing Pipeline 548cda6b87da52dac5690de85ceb6b1d https://www.encodeproject.org/files/ENCFF775VDO/@@download/ENCFF775VDO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF742SCW bigWig fold change over control ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF483RYF 725831439 ENCODE Processing Pipeline 9aa12885f621c4ed11c866a92c848fb8 https://www.encodeproject.org/files/ENCFF742SCW/@@download/ENCFF742SCW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF827CDT bed narrowPeak conservative idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF289JUZ, ENCFF722MDG, ENCFF775VDO 700385 ENCODE Processing Pipeline ed43f2628d1741eb3df8b08a8539f4ec https://www.encodeproject.org/files/ENCFF827CDT/@@download/ENCFF827CDT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF100XSF bigWig signal p-value ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF483RYF, ENCFF639ACF 547819080 ENCODE Processing Pipeline 8be993dad9f1a4a25fedf0a89517e382 https://www.encodeproject.org/files/ENCFF100XSF/@@download/ENCFF100XSF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF289JUZ bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF483RYF, ENCFF639ACF 5607158 ENCODE Processing Pipeline 192529d48a0d444372615e3f95712a8b https://www.encodeproject.org/files/ENCFF289JUZ/@@download/ENCFF289JUZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF185ZQO bigBed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF722MDG 8858111 ENCODE Processing Pipeline 977ff7c41eeba1795a04b5905c84cde5 https://www.encodeproject.org/files/ENCFF185ZQO/@@download/ENCFF185ZQO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF300PII bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF827CDT 1250696 ENCODE Processing Pipeline 3a4f2037faf8d691aa99a0f4a9a7d7ad https://www.encodeproject.org/files/ENCFF300PII/@@download/ENCFF300PII.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF743UEO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF402JJK 1509842 ENCODE Processing Pipeline eb3f148347e9acc0a260cb77f940837f https://www.encodeproject.org/files/ENCFF743UEO/@@download/ENCFF743UEO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000NEJ bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NEQ 640372418 Richard Myers, HAIB d42317c957853b2c47b7c693ee2b5677 https://www.encodeproject.org/files/ENCFF000NEJ/@@download/ENCFF000NEJ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NEK bigBed broadPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TTF 785235 Richard Myers, HAIB 6f09f3cc18cbb30ccb4265cdff871765 https://www.encodeproject.org/files/ENCFF000NEK/@@download/ENCFF000NEK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NEL bigBed broadPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TTG 1142912 Richard Myers, HAIB d845d73d1183c7695b25261d321ae5fc https://www.encodeproject.org/files/ENCFF000NEL/@@download/ENCFF000NEL.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NEM bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NEV 894863278 Richard Myers, HAIB d7ca515255bb2ce76485af91be30672f https://www.encodeproject.org/files/ENCFF000NEM/@@download/ENCFF000NEM.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NEN bigWig raw signal ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 53673291 Richard Myers, HAIB 757685c5e9e0ccc9335a1ccc7cbf5e20 https://www.encodeproject.org/files/ENCFF000NEN/@@download/ENCFF000NEN.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NEO bigWig raw signal ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 66630878 Richard Myers, HAIB ac68b5781d30bcb5fd010faa6cdbaa21 https://www.encodeproject.org/files/ENCFF000NEO/@@download/ENCFF000NEO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000NEQ fastq reads ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 591777255 Richard Myers, HAIB 5bb320a8a52367b02710858e42aedb6a https://www.encodeproject.org/files/ENCFF000NEQ/@@download/ENCFF000NEQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NFZ/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NEV fastq reads ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2440367269 Richard Myers, HAIB ab323071882f93aef2cd26d5a1bb372d https://www.encodeproject.org/files/ENCFF000NEV/@@download/ENCFF000NEV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NFZ/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF001TTF bed broadPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 420370 Richard Myers, HAIB 0bf98b8153e9660902505764c875efc4 https://www.encodeproject.org/files/ENCFF001TTF/@@download/ENCFF001TTF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TTG bed broadPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 638444 Richard Myers, HAIB c050ad67dce19346e6db24a615312b00 https://www.encodeproject.org/files/ENCFF001TTG/@@download/ENCFF001TTG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CFW bed narrowPeak optimal idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 577733 ENCODE Consortium Analysis Working Group 140ea27d7d1b5b9bf446ebf6ad5b8be5 https://www.encodeproject.org/files/ENCFF002CFW/@@download/ENCFF002CFW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF747QML bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CFW 1574340 ENCODE Consortium 318275690afb1da9bceb65fc8e6872be https://www.encodeproject.org/files/ENCFF747QML/@@download/ENCFF747QML.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF600YAF bam unfiltered alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEQ, ENCFF807MUK 701287767 ENCODE Processing Pipeline 460b04ca5b56aebcf941becbe2d90efe https://www.encodeproject.org/files/ENCFF600YAF/@@download/ENCFF600YAF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF380ZHO bam unfiltered alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEQ, ENCFF643CGH 701799098 ENCODE Processing Pipeline 5799f307508f30fd89465c391b4e793c https://www.encodeproject.org/files/ENCFF380ZHO/@@download/ENCFF380ZHO.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF960AWO bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NEV, ENCFF643CGH 507934740 ENCODE Processing Pipeline bbc7e58205196c6be754e5cd6aac4bfe https://www.encodeproject.org/files/ENCFF960AWO/@@download/ENCFF960AWO.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF408LVE bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NEV, ENCFF807MUK 508391394 ENCODE Processing Pipeline 90db11161162e27124733e72052c7dbf https://www.encodeproject.org/files/ENCFF408LVE/@@download/ENCFF408LVE.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF471JEL bam unfiltered alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NEV, ENCFF643CGH 2719604713 ENCODE Processing Pipeline b7306b738fe2d7d7e22c34b5385e04e8 https://www.encodeproject.org/files/ENCFF471JEL/@@download/ENCFF471JEL.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF074RXF bam unfiltered alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NEV, ENCFF807MUK 2718148109 ENCODE Processing Pipeline 360a68f3899da04f389c652b9c149558 https://www.encodeproject.org/files/ENCFF074RXF/@@download/ENCFF074RXF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF593TPG bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEQ, ENCFF643CGH 249287134 ENCODE Processing Pipeline 3f445a148ab4d4a92f4ed947fb00a52e https://www.encodeproject.org/files/ENCFF593TPG/@@download/ENCFF593TPG.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF880YCS bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEQ, ENCFF807MUK 249582892 ENCODE Processing Pipeline b923c59acf9740cb9d27bc2e42b4f379 https://www.encodeproject.org/files/ENCFF880YCS/@@download/ENCFF880YCS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF446OMR bigWig signal p-value ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF466VLR, ENCFF593TPG 240720450 ENCODE Processing Pipeline 2a0efc23292a2a47b0a2489a5a0b1f6c https://www.encodeproject.org/files/ENCFF446OMR/@@download/ENCFF446OMR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF357DRS bigWig signal p-value ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF466VLR, ENCFF960AWO 253851650 ENCODE Processing Pipeline 9fdf491131b4e3248fd5ef638eed4cc4 https://www.encodeproject.org/files/ENCFF357DRS/@@download/ENCFF357DRS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF274LJN bigWig signal p-value ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF466VLR, ENCFF593TPG, ENCFF960AWO 297743406 ENCODE Processing Pipeline 5d7d9ce6fb3e6633d40de3c7b1bf11b9 https://www.encodeproject.org/files/ENCFF274LJN/@@download/ENCFF274LJN.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF529BGD bigWig fold change over control ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF466VLR, ENCFF593TPG 102878340 ENCODE Processing Pipeline ce188a8e1370b0d2f97bc02967d9bd32 https://www.encodeproject.org/files/ENCFF529BGD/@@download/ENCFF529BGD.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF535SPO bigWig fold change over control ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF466VLR, ENCFF960AWO 153386588 ENCODE Processing Pipeline 2965254db215233eb44ddae057e3b374 https://www.encodeproject.org/files/ENCFF535SPO/@@download/ENCFF535SPO.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF688CLH bigWig fold change over control ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF466VLR, ENCFF593TPG, ENCFF960AWO 214218105 ENCODE Processing Pipeline 7069e1a81f3fa0c2b02953d3b2cf6ad5 https://www.encodeproject.org/files/ENCFF688CLH/@@download/ENCFF688CLH.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF161NZT bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF466VLR, ENCFF593TPG 2544304 ENCODE Processing Pipeline 5de7a5fa11ada7ab9a822ef1bb2725d7 https://www.encodeproject.org/files/ENCFF161NZT/@@download/ENCFF161NZT.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF744ESR bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF466VLR, ENCFF960AWO 4499943 ENCODE Processing Pipeline 5bd23246a6d53b3395b19311f76aff74 https://www.encodeproject.org/files/ENCFF744ESR/@@download/ENCFF744ESR.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF825AZS bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF466VLR, ENCFF593TPG, ENCFF960AWO 5891554 ENCODE Processing Pipeline 5dcfc3769c9d446293aaa2ff94e4deb0 https://www.encodeproject.org/files/ENCFF825AZS/@@download/ENCFF825AZS.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF509QKH bigBed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF161NZT 5484408 ENCODE Processing Pipeline 8902d1a4b5af3018b60c851606426ecd https://www.encodeproject.org/files/ENCFF509QKH/@@download/ENCFF509QKH.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF427GFA bigBed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF744ESR 9586638 ENCODE Processing Pipeline b476866261100f9c50197ac273d12105 https://www.encodeproject.org/files/ENCFF427GFA/@@download/ENCFF427GFA.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF290OEK bigBed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF825AZS 12138719 ENCODE Processing Pipeline 4a83214c41a13852f5cdca642ca2db05 https://www.encodeproject.org/files/ENCFF290OEK/@@download/ENCFF290OEK.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF689QHF bed narrowPeak conservative idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF161NZT, ENCFF419RSJ, ENCFF744ESR, ENCFF825AZS 458077 ENCODE Processing Pipeline f28e9dca1d3dbd39d94b3167568a815b https://www.encodeproject.org/files/ENCFF689QHF/@@download/ENCFF689QHF.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF569TMT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF689QHF 1144205 ENCODE Processing Pipeline 164deab56ad6069d51b39a291609e490 https://www.encodeproject.org/files/ENCFF569TMT/@@download/ENCFF569TMT.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF915LKZ bed narrowPeak optimal idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF161NZT, ENCFF419RSJ, ENCFF744ESR, ENCFF825AZS 493827 ENCODE Processing Pipeline 6474d9d3335056a57e5388bcb08292bf https://www.encodeproject.org/files/ENCFF915LKZ/@@download/ENCFF915LKZ.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF163VQB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF915LKZ 1203634 ENCODE Processing Pipeline a97139d06e0c5087ae1cd798482e0a02 https://www.encodeproject.org/files/ENCFF163VQB/@@download/ENCFF163VQB.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF867UPN bigWig signal p-value ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF161DLA, ENCFF880YCS 257443525 ENCODE Processing Pipeline 49ccc8f31b0f50be87267ff09a43d227 https://www.encodeproject.org/files/ENCFF867UPN/@@download/ENCFF867UPN.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF563SON bigWig signal p-value ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF161DLA, ENCFF408LVE 266683197 ENCODE Processing Pipeline f5bc9f979457927f48ffc65e144735b5 https://www.encodeproject.org/files/ENCFF563SON/@@download/ENCFF563SON.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF169VIK bigWig signal p-value ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF161DLA, ENCFF408LVE, ENCFF880YCS 297800290 ENCODE Processing Pipeline 2479ac3d771f65a75af56ca393323ecc https://www.encodeproject.org/files/ENCFF169VIK/@@download/ENCFF169VIK.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF100PJS bigWig fold change over control ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF161DLA, ENCFF880YCS 103387571 ENCODE Processing Pipeline 4870f5d87ca381a41a75fcad32da0dcc https://www.encodeproject.org/files/ENCFF100PJS/@@download/ENCFF100PJS.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF161EXA bigWig fold change over control ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF161DLA, ENCFF408LVE 153517691 ENCODE Processing Pipeline 45253d92cbf1abd333a73ca93f58f25d https://www.encodeproject.org/files/ENCFF161EXA/@@download/ENCFF161EXA.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF453CBY bigWig fold change over control ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF161DLA, ENCFF408LVE, ENCFF880YCS 214001129 ENCODE Processing Pipeline 44a59dc81593400d034cb74446279215 https://www.encodeproject.org/files/ENCFF453CBY/@@download/ENCFF453CBY.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF620JEB bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF161DLA, ENCFF408LVE, ENCFF880YCS 5892644 ENCODE Processing Pipeline 793843e2517f8ae710c096135e23535c https://www.encodeproject.org/files/ENCFF620JEB/@@download/ENCFF620JEB.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF049WBH bigBed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF265TSG 5483771 ENCODE Processing Pipeline 6769945fa6b2676e8463dbf69012362e https://www.encodeproject.org/files/ENCFF049WBH/@@download/ENCFF049WBH.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF551TPK bigBed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF315RID 9580846 ENCODE Processing Pipeline 6de1cc810cc285558c5b7882125f0d09 https://www.encodeproject.org/files/ENCFF551TPK/@@download/ENCFF551TPK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF073HTJ bigBed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF620JEB 12136750 ENCODE Processing Pipeline 0d213cd83f0dda0d06042883b5b15b0d https://www.encodeproject.org/files/ENCFF073HTJ/@@download/ENCFF073HTJ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF315SPJ bed narrowPeak conservative idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF265TSG, ENCFF315RID, ENCFF620JEB 458771 ENCODE Processing Pipeline 3057f509f26dfcda8638813d3139614f https://www.encodeproject.org/files/ENCFF315SPJ/@@download/ENCFF315SPJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF951FBF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF315SPJ 1142432 ENCODE Processing Pipeline c41a53f87b9c8828e04f518b74e38b45 https://www.encodeproject.org/files/ENCFF951FBF/@@download/ENCFF951FBF.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF532MZI bed narrowPeak optimal idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF265TSG, ENCFF315RID, ENCFF620JEB 494725 ENCODE Processing Pipeline bc7c9525a38b23ac07d0f598744dab17 https://www.encodeproject.org/files/ENCFF532MZI/@@download/ENCFF532MZI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF113DVJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF532MZI 1203582 ENCODE Processing Pipeline 36015a023288f8db34ee692e67f1d5fb https://www.encodeproject.org/files/ENCFF113DVJ/@@download/ENCFF113DVJ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF265TSG bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF161DLA, ENCFF880YCS 2544254 ENCODE Processing Pipeline cc4c0cbe2396f656a4468b1039dbc7f9 https://www.encodeproject.org/files/ENCFF265TSG/@@download/ENCFF265TSG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF315RID bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF161DLA, ENCFF408LVE 4497911 ENCODE Processing Pipeline 8839c5dbe8e64fe69ff2244011d78b7e https://www.encodeproject.org/files/ENCFF315RID/@@download/ENCFF315RID.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NER bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NEZ 605979558 Richard Myers, HAIB c2d6e0ea21dabe7402a435823c6bcd34 https://www.encodeproject.org/files/ENCFF000NER/@@download/ENCFF000NER.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NES bigBed broadPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TTH 1036093 Richard Myers, HAIB e2aeb5e5b19a9360629baeb1b7010a44 https://www.encodeproject.org/files/ENCFF000NES/@@download/ENCFF000NES.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NET bigBed broadPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TTI 1694888 Richard Myers, HAIB 2dc3df99ddef84c65b66be1625f3b47b https://www.encodeproject.org/files/ENCFF000NET/@@download/ENCFF000NET.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NEU bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NFG 673542030 Richard Myers, HAIB cc1f0c8bccac1b1403b14f5f0e8cc09e https://www.encodeproject.org/files/ENCFF000NEU/@@download/ENCFF000NEU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NEW bigWig raw signal ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 59191920 Richard Myers, HAIB 5389d016b49bd49e3b1a4c9e973c49c0 https://www.encodeproject.org/files/ENCFF000NEW/@@download/ENCFF000NEW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NEX bigWig raw signal ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 72946110 Richard Myers, HAIB 21de68e950b6550b6ac87d0c618ef4d6 https://www.encodeproject.org/files/ENCFF000NEX/@@download/ENCFF000NEX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NEZ fastq reads ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 481612169 Richard Myers, HAIB 7701e01f0abefa6087e02985ba0ac522 https://www.encodeproject.org/files/ENCFF000NEZ/@@download/ENCFF000NEZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGC/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NFG fastq reads ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1298312303 Richard Myers, HAIB d51f566646f310c50b721352d94e5e8a https://www.encodeproject.org/files/ENCFF000NFG/@@download/ENCFF000NFG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGC/ released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001TTH bed broadPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 580847 Richard Myers, HAIB 01e1ea390275be67150b65a4ee14f2f3 https://www.encodeproject.org/files/ENCFF001TTH/@@download/ENCFF001TTH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TTI bed broadPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 806449 Richard Myers, HAIB 8c9493546935e80042b1198a4f01b5ba https://www.encodeproject.org/files/ENCFF001TTI/@@download/ENCFF001TTI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CFX bed narrowPeak optimal idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 581364 ENCODE Consortium Analysis Working Group 0b45eb55fec3034011a0f3cb9340b833 https://www.encodeproject.org/files/ENCFF002CFX/@@download/ENCFF002CFX.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF654ZDO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CFX 1586657 ENCODE Consortium 208ce343acb0255eeac67553ef86cb4e https://www.encodeproject.org/files/ENCFF654ZDO/@@download/ENCFF654ZDO.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF165KKA bam unfiltered alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEZ, ENCFF807MUK 596428589 ENCODE Processing Pipeline fa88aed454df87f01a159e60d93e6e88 https://www.encodeproject.org/files/ENCFF165KKA/@@download/ENCFF165KKA.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF239AAI bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEZ, ENCFF807MUK 243765517 ENCODE Processing Pipeline d7b9db9a2316c7ba15fb6b75c33c692e https://www.encodeproject.org/files/ENCFF239AAI/@@download/ENCFF239AAI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF537TSZ bam unfiltered alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEZ, ENCFF643CGH 596965490 ENCODE Processing Pipeline 21eb333a1447ef418dbba549fc233160 https://www.encodeproject.org/files/ENCFF537TSZ/@@download/ENCFF537TSZ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF324RAL bam unfiltered alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NFG, ENCFF643CGH 1478838115 ENCODE Processing Pipeline 53ee9e81fcf119dc1fac76d5d4d211a1 https://www.encodeproject.org/files/ENCFF324RAL/@@download/ENCFF324RAL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF843BZC bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEZ, ENCFF643CGH 243481682 ENCODE Processing Pipeline afa19b840c1efbc2d59c225aed772685 https://www.encodeproject.org/files/ENCFF843BZC/@@download/ENCFF843BZC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF014GUN bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NFG, ENCFF643CGH 359043420 ENCODE Processing Pipeline a1b6d28ed5d73a42c7e1dd1d1825c803 https://www.encodeproject.org/files/ENCFF014GUN/@@download/ENCFF014GUN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF400LWW bam unfiltered alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NFG, ENCFF807MUK 1478099276 ENCODE Processing Pipeline bdadc077a0f10e842e90c5c6d69580fa https://www.encodeproject.org/files/ENCFF400LWW/@@download/ENCFF400LWW.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF819TOT bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NFG, ENCFF807MUK 359382877 ENCODE Processing Pipeline 039e117d906c5c019298c1eff28a766f https://www.encodeproject.org/files/ENCFF819TOT/@@download/ENCFF819TOT.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF148PMC bigWig signal p-value ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF239AAI, ENCFF686SSI 247409793 ENCODE Processing Pipeline 671fdfe287bd0a08258f9d08203dbc8f https://www.encodeproject.org/files/ENCFF148PMC/@@download/ENCFF148PMC.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF656EBY bigWig signal p-value ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF819TOT 275159005 ENCODE Processing Pipeline 85b3760f1fd11221c96ad4b60a4f6a84 https://www.encodeproject.org/files/ENCFF656EBY/@@download/ENCFF656EBY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF321OEE bigWig signal p-value ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF239AAI, ENCFF686SSI, ENCFF819TOT 307000656 ENCODE Processing Pipeline b10b583467cefa481dbd9ddb9b8885d2 https://www.encodeproject.org/files/ENCFF321OEE/@@download/ENCFF321OEE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF472ROH bigWig fold change over control ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF239AAI, ENCFF686SSI 99630117 ENCODE Processing Pipeline 372ea0328901a3f0d9574eb93ff6dfa8 https://www.encodeproject.org/files/ENCFF472ROH/@@download/ENCFF472ROH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF154YWS bigWig fold change over control ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF819TOT 127807375 ENCODE Processing Pipeline 248f4cca6b9642d71aefa87b5c2beb2c https://www.encodeproject.org/files/ENCFF154YWS/@@download/ENCFF154YWS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF816OBG bigWig fold change over control ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF239AAI, ENCFF686SSI, ENCFF819TOT 191967877 ENCODE Processing Pipeline 4cb3750e20645d6c700216a250cd4f30 https://www.encodeproject.org/files/ENCFF816OBG/@@download/ENCFF816OBG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF364YCD bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF239AAI, ENCFF686SSI 2830949 ENCODE Processing Pipeline 2686da2e4cfab88186b5dc072363644d https://www.encodeproject.org/files/ENCFF364YCD/@@download/ENCFF364YCD.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF031ZVS bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF819TOT 4174068 ENCODE Processing Pipeline 47231b1a5648f818b7f63399c4138828 https://www.encodeproject.org/files/ENCFF031ZVS/@@download/ENCFF031ZVS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF170PDN bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF239AAI, ENCFF686SSI, ENCFF819TOT 5796823 ENCODE Processing Pipeline 06db58c707fc0a346916d98732bd7a24 https://www.encodeproject.org/files/ENCFF170PDN/@@download/ENCFF170PDN.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF138LHK bigBed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF364YCD 6324970 ENCODE Processing Pipeline d17a0beb8ed3291fea10a24f8d7930fa https://www.encodeproject.org/files/ENCFF138LHK/@@download/ENCFF138LHK.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF542YDC bigBed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF031ZVS 8993965 ENCODE Processing Pipeline 1f259cfa39d7d2587da8af53b2dd9a03 https://www.encodeproject.org/files/ENCFF542YDC/@@download/ENCFF542YDC.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF624CJJ bigBed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF170PDN 12081633 ENCODE Processing Pipeline d97797f7af93815d51786a0d19d27abe https://www.encodeproject.org/files/ENCFF624CJJ/@@download/ENCFF624CJJ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF511OKP bed narrowPeak conservative idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF031ZVS, ENCFF170PDN, ENCFF364YCD 511497 ENCODE Processing Pipeline c3d3fa2c77fafb856716813c4696bc1f https://www.encodeproject.org/files/ENCFF511OKP/@@download/ENCFF511OKP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF322KJY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF511OKP 1222273 ENCODE Processing Pipeline e229852217be4ae521ba2da96b4c0e17 https://www.encodeproject.org/files/ENCFF322KJY/@@download/ENCFF322KJY.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF292PSZ bed narrowPeak optimal idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF031ZVS, ENCFF170PDN, ENCFF364YCD 538973 ENCODE Processing Pipeline e8d72a684afd2ff3959a8669a598c82b https://www.encodeproject.org/files/ENCFF292PSZ/@@download/ENCFF292PSZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF028YJD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292PSZ 1267544 ENCODE Processing Pipeline fee0fa98e4bab1e71bc6eb7606da673a https://www.encodeproject.org/files/ENCFF028YJD/@@download/ENCFF028YJD.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF331KLM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF209ZSP 1224826 ENCODE Processing Pipeline e37e71770bcaf14d749472dc1b9e1dde https://www.encodeproject.org/files/ENCFF331KLM/@@download/ENCFF331KLM.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF397BYG bigWig signal p-value ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291OFI, ENCFF843BZC 277753104 ENCODE Processing Pipeline c2676e6e2eb027b47c520ed1c56cf3b5 https://www.encodeproject.org/files/ENCFF397BYG/@@download/ENCFF397BYG.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF827AMI bigWig signal p-value ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF014GUN, ENCFF291OFI 271632880 ENCODE Processing Pipeline 4eaf002a6712879e85ae68c2f4d41287 https://www.encodeproject.org/files/ENCFF827AMI/@@download/ENCFF827AMI.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF891PVU bigWig signal p-value ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF014GUN, ENCFF291OFI, ENCFF843BZC 306883849 ENCODE Processing Pipeline cb27a85dabb91e744f8e65726e343490 https://www.encodeproject.org/files/ENCFF891PVU/@@download/ENCFF891PVU.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF970UXM bigWig fold change over control ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291OFI, ENCFF843BZC 99291024 ENCODE Processing Pipeline cf36c3c6384a13df51316c4fc1c7478c https://www.encodeproject.org/files/ENCFF970UXM/@@download/ENCFF970UXM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF103AWZ bigWig fold change over control ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF014GUN, ENCFF291OFI 127555066 ENCODE Processing Pipeline e636086c5c5cabe55cc38c3588de0e6b https://www.encodeproject.org/files/ENCFF103AWZ/@@download/ENCFF103AWZ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF951FGK bigWig fold change over control ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF014GUN, ENCFF291OFI, ENCFF843BZC 191262523 ENCODE Processing Pipeline 016bb3966345bd657793820e1b5fb353 https://www.encodeproject.org/files/ENCFF951FGK/@@download/ENCFF951FGK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF360GYC bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291OFI, ENCFF843BZC 2834693 ENCODE Processing Pipeline 5921ae8898ba9912a497ab646586a69c https://www.encodeproject.org/files/ENCFF360GYC/@@download/ENCFF360GYC.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF466YER bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF014GUN, ENCFF291OFI 4175422 ENCODE Processing Pipeline adfb31bd13d2e169565fb91569b174ce https://www.encodeproject.org/files/ENCFF466YER/@@download/ENCFF466YER.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF124TNM bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF014GUN, ENCFF291OFI, ENCFF843BZC 5796535 ENCODE Processing Pipeline 3a884c603f2c566d5dfd9c6c557ac17e https://www.encodeproject.org/files/ENCFF124TNM/@@download/ENCFF124TNM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF046HXP bigBed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF360GYC 6340741 ENCODE Processing Pipeline fae26a25db0d616580cf79b5d410948d https://www.encodeproject.org/files/ENCFF046HXP/@@download/ENCFF046HXP.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF664KTN bed narrowPeak optimal idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF124TNM, ENCFF360GYC, ENCFF419RSJ, ENCFF466YER 537077 ENCODE Processing Pipeline 771dd437fff64602bf0347e9f97e7fae https://www.encodeproject.org/files/ENCFF664KTN/@@download/ENCFF664KTN.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF917KLS bigBed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF466YER 9000535 ENCODE Processing Pipeline aab8d78e63bb7b5e912b3aa3e4c4ca7b https://www.encodeproject.org/files/ENCFF917KLS/@@download/ENCFF917KLS.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF409LUH bigBed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF124TNM 12083705 ENCODE Processing Pipeline 1099dfb073e6a62902810e58ace5d891 https://www.encodeproject.org/files/ENCFF409LUH/@@download/ENCFF409LUH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF209ZSP bed narrowPeak conservative idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF124TNM, ENCFF360GYC, ENCFF419RSJ, ENCFF466YER 511655 ENCODE Processing Pipeline f4f64a97a82dbd59c04cd1d02cb46e44 https://www.encodeproject.org/files/ENCFF209ZSP/@@download/ENCFF209ZSP.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF742XNH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF664KTN 1266024 ENCODE Processing Pipeline 36c578294d7c66194a0c3065b83bb746 https://www.encodeproject.org/files/ENCFF742XNH/@@download/ENCFF742XNH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF562AGE fastq reads ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 single-ended 433707813 Bradley Bernstein, Broad 305495b01fece2a227471f429f4db362 https://www.encodeproject.org/files/ENCFF562AGE/@@download/ENCFF562AGE.fastq.gz Illumina HiSeq 2500 /files/ENCFF115PHM/, /files/ENCFF342XML/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF689PWV fastq reads ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 single-ended 390791670 Bradley Bernstein, Broad 8b41700fd69bb03bc5038c1c96737ef4 https://www.encodeproject.org/files/ENCFF689PWV/@@download/ENCFF689PWV.fastq.gz Illumina HiSeq 2500 /files/ENCFF115PHM/, /files/ENCFF342XML/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF096TTP fastq reads ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 single-ended 377982320 Bradley Bernstein, Broad 559851eeaa49f70aa37d709e43a2ae18 https://www.encodeproject.org/files/ENCFF096TTP/@@download/ENCFF096TTP.fastq.gz Illumina HiSeq 2500 /files/ENCFF115PHM/, /files/ENCFF342XML/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF388XOP fastq reads ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 1 76 single-ended 446724915 Bradley Bernstein, Broad 47b23fac5beaf6a9146408f5a347cf2b https://www.encodeproject.org/files/ENCFF388XOP/@@download/ENCFF388XOP.fastq.gz Illumina HiSeq 2500 /files/ENCFF115PHM/, /files/ENCFF342XML/ released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF593RBZ bam unfiltered alignments ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF096TTP, ENCFF388XOP, ENCFF562AGE, ENCFF643CGH, ENCFF689PWV 1558989388 ENCODE Processing Pipeline a6c1dc7f518dda754cfec34287180998 https://www.encodeproject.org/files/ENCFF593RBZ/@@download/ENCFF593RBZ.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF466BIR bam unfiltered alignments ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF096TTP, ENCFF388XOP, ENCFF562AGE, ENCFF689PWV, ENCFF807MUK 1555683622 ENCODE Processing Pipeline 2dfb17ad9fcfe330c5c77ece1b969e7d https://www.encodeproject.org/files/ENCFF466BIR/@@download/ENCFF466BIR.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF348ECW bam alignments ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF096TTP, ENCFF388XOP, ENCFF562AGE, ENCFF689PWV, ENCFF807MUK 1296955723 ENCODE Processing Pipeline 119925b2eef6524c4d634802919f0d8e https://www.encodeproject.org/files/ENCFF348ECW/@@download/ENCFF348ECW.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF360TJN bam alignments ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF096TTP, ENCFF388XOP, ENCFF562AGE, ENCFF643CGH, ENCFF689PWV 1297979084 ENCODE Processing Pipeline a1119008c362aa863f551251f0e61611 https://www.encodeproject.org/files/ENCFF360TJN/@@download/ENCFF360TJN.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF245CGB bigWig signal p-value ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF360TJN, ENCFF759XSW 671407719 ENCODE Processing Pipeline 0de41832dd38a488595da872ad798799 https://www.encodeproject.org/files/ENCFF245CGB/@@download/ENCFF245CGB.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF863ZIN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF419RSJ, ENCFF785YIF 678715 ENCODE Processing Pipeline 0606a0efa29b15b54be83e26082c823a https://www.encodeproject.org/files/ENCFF863ZIN/@@download/ENCFF863ZIN.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF407RSB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF863ZIN 1216776 ENCODE Processing Pipeline f3efa39a906f24a85efb02f8b50ab46a https://www.encodeproject.org/files/ENCFF407RSB/@@download/ENCFF407RSB.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF024GZU bigWig signal p-value ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF348ECW, ENCFF491GAC 716526158 ENCODE Processing Pipeline 2fd3fc6cc61da9f226131e58f790f165 https://www.encodeproject.org/files/ENCFF024GZU/@@download/ENCFF024GZU.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF785YIF bed narrowPeak peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF360TJN, ENCFF759XSW 5352256 ENCODE Processing Pipeline 0cac4957abb172823defd2492d5702e5 https://www.encodeproject.org/files/ENCFF785YIF/@@download/ENCFF785YIF.bed.gz GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF340MCD bigBed narrowPeak peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF785YIF 11609154 ENCODE Processing Pipeline 52f09af94ebe01b1b88c5bdcf16df934 https://www.encodeproject.org/files/ENCFF340MCD/@@download/ENCFF340MCD.bigBed GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF583DWN bigBed narrowPeak peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF504CYN 11631077 ENCODE Processing Pipeline 1dbeb45d75bce7af662133be655c3187 https://www.encodeproject.org/files/ENCFF583DWN/@@download/ENCFF583DWN.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF622LED bigWig fold change over control ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF360TJN, ENCFF759XSW 664488460 ENCODE Processing Pipeline 6fce50592a1f539386fd0b6796124ad0 https://www.encodeproject.org/files/ENCFF622LED/@@download/ENCFF622LED.bigWig GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF056RTG bigWig fold change over control ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF348ECW, ENCFF491GAC 665169587 ENCODE Processing Pipeline 0a3f539b3213924e07dcf4fac833b6e7 https://www.encodeproject.org/files/ENCFF056RTG/@@download/ENCFF056RTG.bigWig hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF251QXA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF001TDO, ENCFF504CYN 676036 ENCODE Processing Pipeline 01dceca55470a09daec71a125f3c8f4b https://www.encodeproject.org/files/ENCFF251QXA/@@download/ENCFF251QXA.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF504CYN bed narrowPeak peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF348ECW, ENCFF491GAC 5385312 ENCODE Processing Pipeline ae0d017aa58e276fc61fa7374ba22f93 https://www.encodeproject.org/files/ENCFF504CYN/@@download/ENCFF504CYN.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF049OAE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF251QXA 1213881 ENCODE Processing Pipeline 86e86b8b72eacf81751f14bc74e65bfe https://www.encodeproject.org/files/ENCFF049OAE/@@download/ENCFF049OAE.bigBed hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF000PZB bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PZK 867489576 Richard Myers, HAIB 2b523559364b24036fe3674f07b829ee https://www.encodeproject.org/files/ENCFF000PZB/@@download/ENCFF000PZB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PZC bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PZP 1402173759 Richard Myers, HAIB 5a2f247300b27e0a1b1ac4222fef520a https://www.encodeproject.org/files/ENCFF000PZC/@@download/ENCFF000PZC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PZD bigBed broadPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJR 915894 Richard Myers, HAIB 500e9848b44742d30d303e50becccf91 https://www.encodeproject.org/files/ENCFF000PZD/@@download/ENCFF000PZD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PZE bigBed broadPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJS 736178 Richard Myers, HAIB a6b2e4b4b5fcba4d8cc9832597f937b4 https://www.encodeproject.org/files/ENCFF000PZE/@@download/ENCFF000PZE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PZH bigWig raw signal ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 45907910 Richard Myers, HAIB d82d11631ef53cd12c3f5eacb415b09c https://www.encodeproject.org/files/ENCFF000PZH/@@download/ENCFF000PZH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000PZI bigWig raw signal ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 39441358 Richard Myers, HAIB 0d3ecd45d914db581faf6d125de473a3 https://www.encodeproject.org/files/ENCFF000PZI/@@download/ENCFF000PZI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000PZK fastq reads ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 830913112 Richard Myers, HAIB f1f075f13b2f621260ef1a9270242c37 https://www.encodeproject.org/files/ENCFF000PZK/@@download/ENCFF000PZK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PZP fastq reads ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1344326303 Richard Myers, HAIB 14685a1532e030cd4f14d6d78d7e2e38 https://www.encodeproject.org/files/ENCFF000PZP/@@download/ENCFF000PZP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001UJR bed broadPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 1 617800 Richard Myers, HAIB 0598cde9a4ca5b347a48186f3ae321f9 https://www.encodeproject.org/files/ENCFF001UJR/@@download/ENCFF001UJR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF001UJS bed broadPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 1 457052 Richard Myers, HAIB 395155e13146ba3c058da7bc53d2a5d5 https://www.encodeproject.org/files/ENCFF001UJS/@@download/ENCFF001UJS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002CLV bed narrowPeak optimal idr thresholded peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 754687 ENCODE Consortium Analysis Working Group 703c04df1ee5c8d5245c2751d593b317 https://www.encodeproject.org/files/ENCFF002CLV/@@download/ENCFF002CLV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF396YCE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLV 1848984 ENCODE Consortium 3aa8cad2f2f86b12b661228ccdda2175 https://www.encodeproject.org/files/ENCFF396YCE/@@download/ENCFF396YCE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF083SFE bam unfiltered alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZK, ENCFF643CGH 1025218179 ENCODE Processing Pipeline f6e236d776affad72daca70a92aec3c1 https://www.encodeproject.org/files/ENCFF083SFE/@@download/ENCFF083SFE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF645IYJ bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZK, ENCFF643CGH 477698469 ENCODE Processing Pipeline 2ebaef637e9456f1b62b589b7511d4f2 https://www.encodeproject.org/files/ENCFF645IYJ/@@download/ENCFF645IYJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF148LZI bam unfiltered alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZP, ENCFF643CGH 1741930687 ENCODE Processing Pipeline e60149a92ea5004e2d0634250b63ffb9 https://www.encodeproject.org/files/ENCFF148LZI/@@download/ENCFF148LZI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF021CMK bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZP, ENCFF643CGH 1051595007 ENCODE Processing Pipeline 728a9eba80041bc0f4f02ce1f793d9a8 https://www.encodeproject.org/files/ENCFF021CMK/@@download/ENCFF021CMK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF623RBS bam unfiltered alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZK, ENCFF807MUK 1022970828 ENCODE Processing Pipeline 913bad3ce8d463011d83284cd84c1702 https://www.encodeproject.org/files/ENCFF623RBS/@@download/ENCFF623RBS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF052PXH bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZK, ENCFF807MUK 477952202 ENCODE Processing Pipeline 2ae770e1ee340a8c935a9aa2a8398147 https://www.encodeproject.org/files/ENCFF052PXH/@@download/ENCFF052PXH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF526BJV bam unfiltered alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZP, ENCFF807MUK 1738084453 ENCODE Processing Pipeline 02a342ea1a27bf61ae516e9eb16a2a77 https://www.encodeproject.org/files/ENCFF526BJV/@@download/ENCFF526BJV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF481PJT bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZP, ENCFF807MUK 1052098571 ENCODE Processing Pipeline 03de0b75e84ed721c6cb565bf3289f7d https://www.encodeproject.org/files/ENCFF481PJT/@@download/ENCFF481PJT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF815LPT bigWig fold change over control ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF021CMK, ENCFF772PJM 349851143 ENCODE Processing Pipeline 37b343d66be9579fd670c3798a08190b https://www.encodeproject.org/files/ENCFF815LPT/@@download/ENCFF815LPT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF526PCX bigWig signal p-value ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF645IYJ, ENCFF772PJM 214266788 ENCODE Processing Pipeline e0cad4d8b0f171bb2b90952104ce4db5 https://www.encodeproject.org/files/ENCFF526PCX/@@download/ENCFF526PCX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF893YOF bigWig signal p-value ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF021CMK, ENCFF772PJM 199740159 ENCODE Processing Pipeline 9164cb572cc6350b90a4fa86081601ac https://www.encodeproject.org/files/ENCFF893YOF/@@download/ENCFF893YOF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF642WHJ bigWig signal p-value ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF021CMK, ENCFF645IYJ, ENCFF772PJM 185051990 ENCODE Processing Pipeline 690d6c9c2a56bc3eeecdc50a1a3001a7 https://www.encodeproject.org/files/ENCFF642WHJ/@@download/ENCFF642WHJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF822TXT bigWig fold change over control ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF645IYJ, ENCFF772PJM 185499721 ENCODE Processing Pipeline e49f4b6676bd99ddb6f953f8124db64f https://www.encodeproject.org/files/ENCFF822TXT/@@download/ENCFF822TXT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF422BSY bigWig fold change over control ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF021CMK, ENCFF645IYJ, ENCFF772PJM 485067015 ENCODE Processing Pipeline 2caac4dde7db2d6030d0f8daf13a7665 https://www.encodeproject.org/files/ENCFF422BSY/@@download/ENCFF422BSY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF178PTI bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF645IYJ, ENCFF772PJM 4230594 ENCODE Processing Pipeline e7a24eb01ffe31e6234de92ec1547908 https://www.encodeproject.org/files/ENCFF178PTI/@@download/ENCFF178PTI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF913QDG bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF021CMK, ENCFF772PJM 4401711 ENCODE Processing Pipeline af0a13a9fda72df45edb4fc6dbc385c0 https://www.encodeproject.org/files/ENCFF913QDG/@@download/ENCFF913QDG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF361DGT bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF021CMK, ENCFF645IYJ, ENCFF772PJM 5111608 ENCODE Processing Pipeline 90b8af4e1e46a9f9acf4903cab5f580d https://www.encodeproject.org/files/ENCFF361DGT/@@download/ENCFF361DGT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF233SHC bigBed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF178PTI 9750355 ENCODE Processing Pipeline 9f03650711dfd83eda8f7691ec69afd4 https://www.encodeproject.org/files/ENCFF233SHC/@@download/ENCFF233SHC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF743KLO bigBed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF913QDG 10216157 ENCODE Processing Pipeline 733a06c866cda9edf54705777437a112 https://www.encodeproject.org/files/ENCFF743KLO/@@download/ENCFF743KLO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF359NJA bigBed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF361DGT 10785159 ENCODE Processing Pipeline d47c303e381d8fb98cbeff4628ff66b6 https://www.encodeproject.org/files/ENCFF359NJA/@@download/ENCFF359NJA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF561OGS bed narrowPeak optimal idr thresholded peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF178PTI, ENCFF361DGT, ENCFF419RSJ, ENCFF913QDG 627927 ENCODE Processing Pipeline b45c5bffe7443eafc8922d733c211f2a https://www.encodeproject.org/files/ENCFF561OGS/@@download/ENCFF561OGS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF962GIJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF561OGS 1237621 ENCODE Processing Pipeline f623cdfe6303f5bc51f7ad572e39cf07 https://www.encodeproject.org/files/ENCFF962GIJ/@@download/ENCFF962GIJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF270CPX bigWig fold change over control ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF481PJT, ENCFF750MIM 351244524 ENCODE Processing Pipeline 918061bc38923b2b4efcf5848b15a220 https://www.encodeproject.org/files/ENCFF270CPX/@@download/ENCFF270CPX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF067ELR bigWig signal p-value ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF052PXH, ENCFF481PJT, ENCFF750MIM 186032463 ENCODE Processing Pipeline 49e96cefe6c31b37a07f906496f9075a https://www.encodeproject.org/files/ENCFF067ELR/@@download/ENCFF067ELR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF671MRQ bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF481PJT, ENCFF750MIM 4415578 ENCODE Processing Pipeline 923cb3d41bb396499735f3ecefeedf4c https://www.encodeproject.org/files/ENCFF671MRQ/@@download/ENCFF671MRQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF354BUW bigBed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF511ZEU 9753972 ENCODE Processing Pipeline 3accedec20e861a32f27708c13c6f03e https://www.encodeproject.org/files/ENCFF354BUW/@@download/ENCFF354BUW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF602MOA bigWig signal p-value ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF481PJT, ENCFF750MIM 199783797 ENCODE Processing Pipeline 60fa9700f13951d9dd6d0681e7041aaa https://www.encodeproject.org/files/ENCFF602MOA/@@download/ENCFF602MOA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF511ZEU bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF052PXH, ENCFF750MIM 4238268 ENCODE Processing Pipeline 3d1d035ab43db38b2cad069a26cc2e8b https://www.encodeproject.org/files/ENCFF511ZEU/@@download/ENCFF511ZEU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF537QVM bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF052PXH, ENCFF481PJT, ENCFF750MIM 5123503 ENCODE Processing Pipeline ac75bda26ea184e834746f62d5b76ee3 https://www.encodeproject.org/files/ENCFF537QVM/@@download/ENCFF537QVM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF199RLH bigBed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MRQ 10225025 ENCODE Processing Pipeline 115d1818cddb959da7e5d51e27581bbf https://www.encodeproject.org/files/ENCFF199RLH/@@download/ENCFF199RLH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF650QBX bigBed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF537QVM 10794397 ENCODE Processing Pipeline abb0f0d225247a832f08aad6ec377b2a https://www.encodeproject.org/files/ENCFF650QBX/@@download/ENCFF650QBX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF171SJU bigWig signal p-value ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF052PXH, ENCFF750MIM 214437909 ENCODE Processing Pipeline a4d524ca86018bcb5ca3d4bc0c7db233 https://www.encodeproject.org/files/ENCFF171SJU/@@download/ENCFF171SJU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF037SVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF182QDI 1240949 ENCODE Processing Pipeline 6ed50a57101afffb2693996e6976f045 https://www.encodeproject.org/files/ENCFF037SVQ/@@download/ENCFF037SVQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF960YPS bigWig fold change over control ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF052PXH, ENCFF750MIM 184003042 ENCODE Processing Pipeline 97d368627c85b717d021a6ab27e617e5 https://www.encodeproject.org/files/ENCFF960YPS/@@download/ENCFF960YPS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF182QDI bed narrowPeak optimal idr thresholded peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF511ZEU, ENCFF537QVM, ENCFF671MRQ 630223 ENCODE Processing Pipeline 32b8aef967771ff7865454fc10cc9ab3 https://www.encodeproject.org/files/ENCFF182QDI/@@download/ENCFF182QDI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF920HQZ bigWig fold change over control ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF052PXH, ENCFF481PJT, ENCFF750MIM 484085866 ENCODE Processing Pipeline 217aa7f140a624420652e3e9c469c194 https://www.encodeproject.org/files/ENCFF920HQZ/@@download/ENCFF920HQZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QZI bam alignments ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QZY 1582011329 Richard Myers, HAIB 9d9d2c6d96e9324a2636842b5c4da2e1 https://www.encodeproject.org/files/ENCFF000QZI/@@download/ENCFF000QZI.bam hg19 released biological replicates with identical biosample ENCFF000QZJ bam alignments ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZV 888478364 Richard Myers, HAIB d838fb9066af413414be46ceffcfc01b https://www.encodeproject.org/files/ENCFF000QZJ/@@download/ENCFF000QZJ.bam hg19 released biological replicates with identical biosample ENCFF000QZL bigBed broadPeak peaks ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPN 244796 Richard Myers, HAIB 090a44203f14c4dbe93940d2ef74bd10 https://www.encodeproject.org/files/ENCFF000QZL/@@download/ENCFF000QZL.bigBed hg19 released biological replicates with identical biosample ENCFF000QZM bigBed broadPeak peaks ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPO 116809 Richard Myers, HAIB d35c45192db89c779795e8654b8f2346 https://www.encodeproject.org/files/ENCFF000QZM/@@download/ENCFF000QZM.bigBed hg19 released biological replicates with identical biosample ENCFF000QZO bigWig raw signal ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 1 1 160134138 Richard Myers, HAIB a9604c33a5cbef0d14d5700fdc57eaaf https://www.encodeproject.org/files/ENCFF000QZO/@@download/ENCFF000QZO.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QZP bigWig raw signal ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 2 1 103142390 Richard Myers, HAIB fc3ddb797153c503f195c709a2969b09 https://www.encodeproject.org/files/ENCFF000QZP/@@download/ENCFF000QZP.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QZV fastq reads ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 905172475 Richard Myers, HAIB 33a89d70ee8208e5c01c8d5af3825867 https://www.encodeproject.org/files/ENCFF000QZV/@@download/ENCFF000QZV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF000QZY fastq reads ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1634504370 Richard Myers, HAIB d357f70d1e9061ebcb929e974aca5d70 https://www.encodeproject.org/files/ENCFF000QZY/@@download/ENCFF000QZY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPN bed broadPeak peaks ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 1 1 99614 Richard Myers, HAIB 90923b7863575999e5f937f0b883aa7c https://www.encodeproject.org/files/ENCFF001UPN/@@download/ENCFF001UPN.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPO bed broadPeak peaks ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 2 1 38197 Richard Myers, HAIB 87c532c186b8aad3e00d3c29ab0ae08b https://www.encodeproject.org/files/ENCFF001UPO/@@download/ENCFF001UPO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000ZKZ bam alignments ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZLD 1240953470 Peggy Farnham, USC fca4c4735f6c5a5a2e407f0438d565ab https://www.encodeproject.org/files/ENCFF000ZKZ/@@download/ENCFF000ZKZ.bam hg19 released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF000ZLA bigBed narrowPeak peaks ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQH 829334 Peggy Farnham, USC 237a1d0e94febbbc5efb31eabff8ef8e https://www.encodeproject.org/files/ENCFF000ZLA/@@download/ENCFF000ZLA.bigBed hg19 released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF000ZLB bigWig signal ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 389141198 Peggy Farnham, USC e2f7b2fed35b033c60968fc39cdaad8e https://www.encodeproject.org/files/ENCFF000ZLB/@@download/ENCFF000ZLB.bigWig hg19 released missing genetic modification characterization biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000ZLC bam alignments ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZLV 1190458053 Peggy Farnham, USC d916c5e89bf7810c0707256f7fe59564 https://www.encodeproject.org/files/ENCFF000ZLC/@@download/ENCFF000ZLC.bam hg19 released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF000ZLD fastq reads ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 1002590090 Peggy Farnham, USC 69a5c254acb8803fd2146728b37c0b0e https://www.encodeproject.org/files/ENCFF000ZLD/@@download/ENCFF000ZLD.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHL/ released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF000ZLV fastq reads ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 973772730 Peggy Farnham, USC 179e5990f6feb75fdbf4020750ce5d5f https://www.encodeproject.org/files/ENCFF000ZLV/@@download/ENCFF000ZLV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHM/ released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF001VQH bed narrowPeak peaks ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 318314 Peggy Farnham, USC ba3e0ce4c8a99599edbbb1a87b7cb481 https://www.encodeproject.org/files/ENCFF001VQH/@@download/ENCFF001VQH.bed.gz hg19 released missing genetic modification characterization biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CZL bed narrowPeak optimal idr thresholded peaks ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 503975 ENCODE Consortium Analysis Working Group 401f2b31a20d94eecf6c435323b5861b https://www.encodeproject.org/files/ENCFF002CZL/@@download/ENCFF002CZL.bed.gz hg19 released missing genetic modification characterization biological replicates with identical biosample, missing derived_from insufficient read length ENCFF201TNK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZL 1300451 ENCODE Consortium 3f5173fc2bdc92f42845e7bee5e72396 https://www.encodeproject.org/files/ENCFF201TNK/@@download/ENCFF201TNK.bigBed hg19 released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF000VQU bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 1 407812395 Peggy Farnham, USC 6318b39d9c8c1db90de748c64c7f9aae https://www.encodeproject.org/files/ENCFF000VQU/@@download/ENCFF000VQU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000VQV bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VDT 153571 Peggy Farnham, USC 22d79fe0ea47f83aae6898c32d869019 https://www.encodeproject.org/files/ENCFF000VQV/@@download/ENCFF000VQV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000VQW fastq reads ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 810218000 Peggy Farnham, USC 41da228aa6c35e0409420c25d00aaccb https://www.encodeproject.org/files/ENCFF000VQW/@@download/ENCFF000VQW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VQO/, /files/ENCFF000VQQ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000VQY fastq reads ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1072123027 Peggy Farnham, USC 398221b5edfe7b9571f674e7a5baa86f https://www.encodeproject.org/files/ENCFF000VQY/@@download/ENCFF000VQY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VQO/, /files/ENCFF000VQQ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000VRA bigWig signal ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 359315747 Peggy Farnham, USC 4337a6075fbcabf3de5926571c828cfc https://www.encodeproject.org/files/ENCFF000VRA/@@download/ENCFF000VRA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000VRB bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 1 554563433 Peggy Farnham, USC e8137f47efaf967b7e71cc91163ee91f https://www.encodeproject.org/files/ENCFF000VRB/@@download/ENCFF000VRB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001VDT bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 25609 Peggy Farnham, USC 218e2d1f62d7e845fd0d3982dce9791f https://www.encodeproject.org/files/ENCFF001VDT/@@download/ENCFF001VDT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002COH bed narrowPeak optimal idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 15776 ENCODE Consortium Analysis Working Group c5aaead3929bf620507a079620b8e309 https://www.encodeproject.org/files/ENCFF002COH/@@download/ENCFF002COH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF429SSA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE ENCFF002COH 119437 ENCODE Consortium b7952bebb1614e37d17c1a73171f8828 https://www.encodeproject.org/files/ENCFF429SSA/@@download/ENCFF429SSA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF999BAB bam unfiltered alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQW, ENCFF643CGH 924923828 ENCODE Processing Pipeline a060f7162f5f94344cd7284f60e4746e https://www.encodeproject.org/files/ENCFF999BAB/@@download/ENCFF999BAB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF856IKR bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQW, ENCFF643CGH 509676389 ENCODE Processing Pipeline dedd4f718b253e39f21c40aab18597c3 https://www.encodeproject.org/files/ENCFF856IKR/@@download/ENCFF856IKR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF599NSC bam unfiltered alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQY, ENCFF643CGH 1227285581 ENCODE Processing Pipeline 5aadc4f9b7c8a77f453393ad7f5673ad https://www.encodeproject.org/files/ENCFF599NSC/@@download/ENCFF599NSC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF596VUL bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQY, ENCFF643CGH 761767114 ENCODE Processing Pipeline 309a1bbf11184280d9af979b2ef7a691 https://www.encodeproject.org/files/ENCFF596VUL/@@download/ENCFF596VUL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF083JDO bam unfiltered alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQW, ENCFF807MUK 918909304 ENCODE Processing Pipeline 091a22da5b807fb087da7f98b3bb416c https://www.encodeproject.org/files/ENCFF083JDO/@@download/ENCFF083JDO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF650DWC bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQW, ENCFF807MUK 509677577 ENCODE Processing Pipeline 05c5bd9b7a3f4354ace5536ecaf35d1d https://www.encodeproject.org/files/ENCFF650DWC/@@download/ENCFF650DWC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF477UBE bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQY, ENCFF807MUK 761795317 ENCODE Processing Pipeline a630ada2eab06510ddd3b453f5a80fb8 https://www.encodeproject.org/files/ENCFF477UBE/@@download/ENCFF477UBE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF028FDD bam unfiltered alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQY, ENCFF807MUK 1222499951 ENCODE Processing Pipeline 2504d79832e5865b67a713ee4a8ad6fb https://www.encodeproject.org/files/ENCFF028FDD/@@download/ENCFF028FDD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF330UJI bigWig signal p-value ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF856IKR, ENCFF887QKP 517914745 ENCODE Processing Pipeline 7261d254cab75d76d39d33f01187756b https://www.encodeproject.org/files/ENCFF330UJI/@@download/ENCFF330UJI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF752ZZB bigWig signal p-value ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF596VUL, ENCFF887QKP 586166020 ENCODE Processing Pipeline 88d265f8daf7244f84ee484baec3d7d0 https://www.encodeproject.org/files/ENCFF752ZZB/@@download/ENCFF752ZZB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF637SKJ bigWig signal p-value ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF596VUL, ENCFF856IKR, ENCFF887QKP 638434985 ENCODE Processing Pipeline e2c7997aaafd40598c8fcc60d50a23df https://www.encodeproject.org/files/ENCFF637SKJ/@@download/ENCFF637SKJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF209DNX bigWig fold change over control ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF856IKR, ENCFF887QKP 445883534 ENCODE Processing Pipeline 9b7ebefe8fe67c268c895d14364f1a0c https://www.encodeproject.org/files/ENCFF209DNX/@@download/ENCFF209DNX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF313GLA bigWig fold change over control ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF596VUL, ENCFF887QKP 534360814 ENCODE Processing Pipeline e495923136c2c366bc3d4f9a144eddb2 https://www.encodeproject.org/files/ENCFF313GLA/@@download/ENCFF313GLA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF342GAT bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF856IKR, ENCFF887QKP 5480816 ENCODE Processing Pipeline bedeb8832e4499a875e5ce90a7aa1814 https://www.encodeproject.org/files/ENCFF342GAT/@@download/ENCFF342GAT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF961VQG bigWig fold change over control ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF596VUL, ENCFF856IKR, ENCFF887QKP 762267187 ENCODE Processing Pipeline 1f4eff69a8a3be9cdc8d7e50e3e2b44a https://www.encodeproject.org/files/ENCFF961VQG/@@download/ENCFF961VQG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF490VUI bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF596VUL, ENCFF856IKR, ENCFF887QKP 6752517 ENCODE Processing Pipeline c674d1348fd1ae774397bf22af73b945 https://www.encodeproject.org/files/ENCFF490VUI/@@download/ENCFF490VUI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF416HXZ bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF152IGL 13395400 ENCODE Processing Pipeline 958de7f5cd0e8b644cc74e8224912a4a https://www.encodeproject.org/files/ENCFF416HXZ/@@download/ENCFF416HXZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF152IGL bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF596VUL, ENCFF887QKP 6108643 ENCODE Processing Pipeline a5ca9ed3136c0289111c15d912364f7f https://www.encodeproject.org/files/ENCFF152IGL/@@download/ENCFF152IGL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF299UQW bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF490VUI 13430562 ENCODE Processing Pipeline 7249ad96bf5cae352eea5cd76a9afd74 https://www.encodeproject.org/files/ENCFF299UQW/@@download/ENCFF299UQW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF150AXN bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF342GAT 13052248 ENCODE Processing Pipeline 4c8be7524509185467598ddb55728c3c https://www.encodeproject.org/files/ENCFF150AXN/@@download/ENCFF150AXN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF897HDW bed narrowPeak conservative idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF152IGL, ENCFF342GAT, ENCFF419RSJ, ENCFF490VUI 16877 ENCODE Processing Pipeline a0b87a80aee46761b07b307865d6a301 https://www.encodeproject.org/files/ENCFF897HDW/@@download/ENCFF897HDW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF652YTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF329TZO 134327 ENCODE Processing Pipeline 8227b919fe3e9021309643bbd173e9b0 https://www.encodeproject.org/files/ENCFF652YTQ/@@download/ENCFF652YTQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF311TTV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF897HDW 128585 ENCODE Processing Pipeline e31830635b86758bbf4a4d8ef27fa557 https://www.encodeproject.org/files/ENCFF311TTV/@@download/ENCFF311TTV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF329TZO bed narrowPeak optimal idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF152IGL, ENCFF342GAT, ENCFF419RSJ, ENCFF490VUI 18487 ENCODE Processing Pipeline fb767b4f235c52974d931f90e1648150 https://www.encodeproject.org/files/ENCFF329TZO/@@download/ENCFF329TZO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF569XXK bigWig fold change over control ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF295UCD, ENCFF477UBE 552115076 ENCODE Processing Pipeline 2f56ab5d6e6f6b3fdf0eccedc9665d8d https://www.encodeproject.org/files/ENCFF569XXK/@@download/ENCFF569XXK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF331WMG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF757CRW 135332 ENCODE Processing Pipeline 3fcc107c2e7d56fad669d5e7b6fbebdc https://www.encodeproject.org/files/ENCFF331WMG/@@download/ENCFF331WMG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF697DVQ bigWig fold change over control ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF295UCD, ENCFF650DWC 446393528 ENCODE Processing Pipeline c6fee67eb205804da46a9761866a98ed https://www.encodeproject.org/files/ENCFF697DVQ/@@download/ENCFF697DVQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF238OBY bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF295UCD, ENCFF650DWC 5522621 ENCODE Processing Pipeline b58467a5c13936b07fd31b5fda9924ce https://www.encodeproject.org/files/ENCFF238OBY/@@download/ENCFF238OBY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF156QTX bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF624BNC 13410017 ENCODE Processing Pipeline 72d0073e8c2fbdcc04380bc7d69fdcc7 https://www.encodeproject.org/files/ENCFF156QTX/@@download/ENCFF156QTX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF883TAB bed narrowPeak conservative idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF238OBY, ENCFF448IAU, ENCFF624BNC 17038 ENCODE Processing Pipeline dc75b528ac579fc1747c9ad850352e7e https://www.encodeproject.org/files/ENCFF883TAB/@@download/ENCFF883TAB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF754FJY bigWig signal p-value ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF295UCD, ENCFF650DWC 478011528 ENCODE Processing Pipeline ad462d9893d20fcef7c28846550f0b64 https://www.encodeproject.org/files/ENCFF754FJY/@@download/ENCFF754FJY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF374LWC bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF238OBY 13048713 ENCODE Processing Pipeline 80ae9cc8687742ba2dfa1d83ad5d75eb https://www.encodeproject.org/files/ENCFF374LWC/@@download/ENCFF374LWC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF624BNC bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF295UCD, ENCFF477UBE, ENCFF650DWC 6770215 ENCODE Processing Pipeline ff43c8f98db33c70f490ea97b5673228 https://www.encodeproject.org/files/ENCFF624BNC/@@download/ENCFF624BNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF723DXB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF883TAB 127957 ENCODE Processing Pipeline 383402c53760afe3a0db00ac3b9bd77d https://www.encodeproject.org/files/ENCFF723DXB/@@download/ENCFF723DXB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF619PWT bigWig signal p-value ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF295UCD, ENCFF477UBE 639324402 ENCODE Processing Pipeline 69ad76adc384183208ce28e0fd5a0738 https://www.encodeproject.org/files/ENCFF619PWT/@@download/ENCFF619PWT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF979RPJ bigWig signal p-value ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF295UCD, ENCFF477UBE, ENCFF650DWC 641140706 ENCODE Processing Pipeline dd3176eba1749df94016c78ec2cdf340 https://www.encodeproject.org/files/ENCFF979RPJ/@@download/ENCFF979RPJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF600KDL bigWig fold change over control ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF295UCD, ENCFF477UBE, ENCFF650DWC 761201198 ENCODE Processing Pipeline 25b696eb891098a85c1a8f50df4809d4 https://www.encodeproject.org/files/ENCFF600KDL/@@download/ENCFF600KDL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF056XUA bigBed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF448IAU 13380217 ENCODE Processing Pipeline 017ab16d3b3d0bde4b2f8783cb517aba https://www.encodeproject.org/files/ENCFF056XUA/@@download/ENCFF056XUA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF448IAU bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF295UCD, ENCFF477UBE 6121363 ENCODE Processing Pipeline c83e7090607d46fe00bd0d46d58d80cd https://www.encodeproject.org/files/ENCFF448IAU/@@download/ENCFF448IAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF757CRW bed narrowPeak optimal idr thresholded peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF238OBY, ENCFF448IAU, ENCFF624BNC 19404 ENCODE Processing Pipeline 1362aba67dcd62317c81e96eb29b58e0 https://www.encodeproject.org/files/ENCFF757CRW/@@download/ENCFF757CRW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ROE bam alignments ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000ROK 465349895 Vishwanath Iyer, UTA 8ce078f811af718f44a34c2146a3858f https://www.encodeproject.org/files/ENCFF000ROE/@@download/ENCFF000ROE.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROF bam alignments ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000ROS 522944565 Vishwanath Iyer, UTA 7b15fc2ea3fddb719626d68569432a22 https://www.encodeproject.org/files/ENCFF000ROF/@@download/ENCFF000ROF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROG bigWig base overlap signal ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 143345354 Vishwanath Iyer, UTA c541180cfc5e956ad595e8ed9ce3d777 https://www.encodeproject.org/files/ENCFF000ROG/@@download/ENCFF000ROG.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000ROH bigBed narrowPeak peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USG 656684 Vishwanath Iyer, UTA 353a51b84d010566c15861b1f4aa6904 https://www.encodeproject.org/files/ENCFF000ROH/@@download/ENCFF000ROH.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROJ bigWig signal ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 3322009487 Vishwanath Iyer, UTA 4aaf1ff788c2e45d2c7a067e8f9a3c6b https://www.encodeproject.org/files/ENCFF000ROJ/@@download/ENCFF000ROJ.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000ROK fastq reads ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 480071475 Vishwanath Iyer, UTA c1de271c9500a813ceb21d13419894f2 https://www.encodeproject.org/files/ENCFF000ROK/@@download/ENCFF000ROK.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROL tar validation ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 50441435 Vishwanath Iyer, UTA 764998ed632d7689fa67ef10536ce880 https://www.encodeproject.org/files/ENCFF000ROL/@@download/ENCFF000ROL.tar.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROS fastq reads ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 667216564 Vishwanath Iyer, UTA 833ff9e94d7e1f32da61fe3670ac117e https://www.encodeproject.org/files/ENCFF000ROS/@@download/ENCFF000ROS.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001USG bed narrowPeak peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 381755 Vishwanath Iyer, UTA 06cbc50b630d710ae406dfce63ec642e https://www.encodeproject.org/files/ENCFF001USG/@@download/ENCFF001USG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002DAI bed narrowPeak optimal idr thresholded peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 89590 ENCODE Consortium Analysis Working Group 6520b2bab2bb01aa3703ef80e352b4c0 https://www.encodeproject.org/files/ENCFF002DAI/@@download/ENCFF002DAI.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF453AHV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAI 279716 ENCODE Consortium 3623b793e580af8453a55267a4c5b855 https://www.encodeproject.org/files/ENCFF453AHV/@@download/ENCFF453AHV.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000CUV bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000CVG 397601295 Bradley Bernstein, Broad 23d48e02b6e7d25607b1ce946e64e4ac https://www.encodeproject.org/files/ENCFF000CUV/@@download/ENCFF000CUV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF000CUW bigBed broadPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDA 2353739 Bradley Bernstein, Broad 490896cbd330a06793b1006770c5e5d9 https://www.encodeproject.org/files/ENCFF000CUW/@@download/ENCFF000CUW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF000CUX bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000CVF 1210431705 Bradley Bernstein, Broad f04ac5c16b022df24f17170b915e63c0 https://www.encodeproject.org/files/ENCFF000CUX/@@download/ENCFF000CUX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF000CUY bigWig signal ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF000CUV, ENCFF000CUX 377102845 Bradley Bernstein, Broad 4f40b00ee8ccd72bef6361d27bccce02 https://www.encodeproject.org/files/ENCFF000CUY/@@download/ENCFF000CUY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF000CVF fastq reads ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 1287508322 Bradley Bernstein, Broad c8baddabba5534a0a758682881f41d85 https://www.encodeproject.org/files/ENCFF000CVF/@@download/ENCFF000CVF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000CVB/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF000CVG fastq reads ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 759193611 Bradley Bernstein, Broad c6bcf90b7e6a81c2d780da6343b7ee84 https://www.encodeproject.org/files/ENCFF000CVG/@@download/ENCFF000CVG.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000CUZ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF001TDA bed broadPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF000CUV, ENCFF000CUX 1492063 Bradley Bernstein, Broad b946557837943afd53090fa3b34ec32f https://www.encodeproject.org/files/ENCFF001TDA/@@download/ENCFF001TDA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF002CFF bed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF000CUV, ENCFF000CUX 1115884 ENCODE Consortium Analysis Working Group ee768cfc76a01e009e13592fff19b850 https://www.encodeproject.org/files/ENCFF002CFF/@@download/ENCFF002CFF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF496TZA bigBed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF002CFF 2208779 ENCODE Consortium 791b75dfef2222a5473a95d4af11bc20 https://www.encodeproject.org/files/ENCFF496TZA/@@download/ENCFF496TZA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF794KKR bam unfiltered alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CVG, ENCFF643CGH 866473985 ENCODE Processing Pipeline 3d59372afcd1cefff10b78ac82f84801 https://www.encodeproject.org/files/ENCFF794KKR/@@download/ENCFF794KKR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF299JTX bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CVG, ENCFF643CGH 147195441 ENCODE Processing Pipeline 6d85787826dc31b20976da8daff4fe57 https://www.encodeproject.org/files/ENCFF299JTX/@@download/ENCFF299JTX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF556NVM bam unfiltered alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CVF, ENCFF643CGH 1619045081 ENCODE Processing Pipeline 9b7445dc1b4af5a8b03dcc279b7c426d https://www.encodeproject.org/files/ENCFF556NVM/@@download/ENCFF556NVM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF803JSH bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CVF, ENCFF643CGH 706534403 ENCODE Processing Pipeline e7a9cebf6b91fcf35df7bfdd60461401 https://www.encodeproject.org/files/ENCFF803JSH/@@download/ENCFF803JSH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF233ITE bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CVG, ENCFF807MUK 147263998 ENCODE Processing Pipeline 17b1aa655cd74043262ef67b08201720 https://www.encodeproject.org/files/ENCFF233ITE/@@download/ENCFF233ITE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF413IXP bam unfiltered alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CVG, ENCFF807MUK 865157708 ENCODE Processing Pipeline 42067f76200743bb443bb6df11d7a914 https://www.encodeproject.org/files/ENCFF413IXP/@@download/ENCFF413IXP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF518MVD bam unfiltered alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CVF, ENCFF807MUK 1612937256 ENCODE Processing Pipeline c5db133f0b4044f96d9cb403e395f710 https://www.encodeproject.org/files/ENCFF518MVD/@@download/ENCFF518MVD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF457SKJ bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CVF, ENCFF807MUK 706775536 ENCODE Processing Pipeline 6492b3e6a397e25de886dec19ff5a1f7 https://www.encodeproject.org/files/ENCFF457SKJ/@@download/ENCFF457SKJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF345RQM bigWig signal p-value ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE 460763045 ENCODE Processing Pipeline c61b2fb5d705ed9f0f954bf0194b0bfc https://www.encodeproject.org/files/ENCFF345RQM/@@download/ENCFF345RQM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF423AOO bigWig fold change over control ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE 117505239 ENCODE Processing Pipeline fa731ad07dfdbea86950af185e8dea67 https://www.encodeproject.org/files/ENCFF423AOO/@@download/ENCFF423AOO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF814BJH bigWig signal p-value ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF010EZQ, ENCFF196FGA, ENCFF457SKJ 585552889 ENCODE Processing Pipeline 13753dad3f23a76ba09af7ae82fc522a https://www.encodeproject.org/files/ENCFF814BJH/@@download/ENCFF814BJH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF256FEL bigWig signal p-value ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE, ENCFF457SKJ 608332506 ENCODE Processing Pipeline ee9255e959a64d804a8e0a328a428f78 https://www.encodeproject.org/files/ENCFF256FEL/@@download/ENCFF256FEL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF003IRG bigWig fold change over control ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF010EZQ, ENCFF196FGA, ENCFF457SKJ 360787221 ENCODE Processing Pipeline ff5be1f608a7beabd4b9a88a5fd1fe17 https://www.encodeproject.org/files/ENCFF003IRG/@@download/ENCFF003IRG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF127XBN bigWig fold change over control ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE, ENCFF457SKJ 434910757 ENCODE Processing Pipeline e5b9c251efc2f2cee6533e25e9454f10 https://www.encodeproject.org/files/ENCFF127XBN/@@download/ENCFF127XBN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF339XPB bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE 1690215 ENCODE Processing Pipeline 6c1d1d16dc53a4a51bd93db713ae9e71 https://www.encodeproject.org/files/ENCFF339XPB/@@download/ENCFF339XPB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF757USJ bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF010EZQ, ENCFF196FGA, ENCFF457SKJ 5109268 ENCODE Processing Pipeline 6d11fa34228f26e01c3787d337fc462f https://www.encodeproject.org/files/ENCFF757USJ/@@download/ENCFF757USJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF397OQE bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE, ENCFF457SKJ 5368345 ENCODE Processing Pipeline 18959ee271edec23205e85b5688ed7d7 https://www.encodeproject.org/files/ENCFF397OQE/@@download/ENCFF397OQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF948IOT bigBed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF339XPB 3833348 ENCODE Processing Pipeline c593db1235bf78bd1c4bd51c88d56a3c https://www.encodeproject.org/files/ENCFF948IOT/@@download/ENCFF948IOT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF055SSC bed narrowPeak conservative idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF339XPB, ENCFF397OQE, ENCFF757USJ 637600 ENCODE Processing Pipeline 79b474e05d67885790d8f7cfe0b4faaa https://www.encodeproject.org/files/ENCFF055SSC/@@download/ENCFF055SSC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF534LAB bigBed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF397OQE 11332947 ENCODE Processing Pipeline cde8c656d68c1e73ca822aadf1d46a7c https://www.encodeproject.org/files/ENCFF534LAB/@@download/ENCFF534LAB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF316EYY bigBed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF757USJ 11246286 ENCODE Processing Pipeline 5fba505ada3c493854b25a0480db3789 https://www.encodeproject.org/files/ENCFF316EYY/@@download/ENCFF316EYY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF425HUB bigBed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF609ETO 1282785 ENCODE Processing Pipeline 38f0c4d0f3c9ddda0b21381b30db94e4 https://www.encodeproject.org/files/ENCFF425HUB/@@download/ENCFF425HUB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF307KZJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF055SSC 1114704 ENCODE Processing Pipeline 81d2a98e0daa071875b523d578aa5886 https://www.encodeproject.org/files/ENCFF307KZJ/@@download/ENCFF307KZJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF609ETO bed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF339XPB, ENCFF397OQE, ENCFF757USJ 771426 ENCODE Processing Pipeline f18afe6d9ac8129dd7c728a8434763f5 https://www.encodeproject.org/files/ENCFF609ETO/@@download/ENCFF609ETO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF122CCT bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF535QXZ, ENCFF699UTE, ENCFF803JSH 5038035 ENCODE Processing Pipeline 865e5b1aa8e558ff7a54f99f160748f0 https://www.encodeproject.org/files/ENCFF122CCT/@@download/ENCFF122CCT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF149NKS bigWig signal p-value ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF299JTX, ENCFF535QXZ, ENCFF699UTE 442348348 ENCODE Processing Pipeline 795621968141f3699fe998ea57ece1b7 https://www.encodeproject.org/files/ENCFF149NKS/@@download/ENCFF149NKS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF673PLZ bigWig fold change over control ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF299JTX, ENCFF535QXZ, ENCFF699UTE 117117673 ENCODE Processing Pipeline ae1a5b4fb79f89410089f6effbd33484 https://www.encodeproject.org/files/ENCFF673PLZ/@@download/ENCFF673PLZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF332DUU bigWig signal p-value ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF299JTX, ENCFF535QXZ, ENCFF699UTE, ENCFF803JSH 675423508 ENCODE Processing Pipeline 1c6c49f7cd12b6e9c08b18679e1d076f https://www.encodeproject.org/files/ENCFF332DUU/@@download/ENCFF332DUU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF019DPW bigWig fold change over control ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF535QXZ, ENCFF699UTE, ENCFF803JSH 360513585 ENCODE Processing Pipeline 36c480db2aefa731890e81ed05808bbc https://www.encodeproject.org/files/ENCFF019DPW/@@download/ENCFF019DPW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF094CFJ bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF299JTX, ENCFF535QXZ, ENCFF699UTE 1697149 ENCODE Processing Pipeline 223701435105dba62a16df6ffbacce48 https://www.encodeproject.org/files/ENCFF094CFJ/@@download/ENCFF094CFJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF847HKF bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF299JTX, ENCFF535QXZ, ENCFF699UTE, ENCFF803JSH 5340419 ENCODE Processing Pipeline 78fd960453d34236c3c6145ed28ebd33 https://www.encodeproject.org/files/ENCFF847HKF/@@download/ENCFF847HKF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF609IPZ bigBed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF094CFJ 3852010 ENCODE Processing Pipeline 3c65d285ce9cea0e3d7f85a33bf8b0b5 https://www.encodeproject.org/files/ENCFF609IPZ/@@download/ENCFF609IPZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF676OQC bigBed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF122CCT 11149172 ENCODE Processing Pipeline 89e60eae9355d513c5b12b08724dc5be https://www.encodeproject.org/files/ENCFF676OQC/@@download/ENCFF676OQC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF182FGY bigBed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF847HKF 11302995 ENCODE Processing Pipeline 101a38e5452ca12238dbf77e3de94f6b https://www.encodeproject.org/files/ENCFF182FGY/@@download/ENCFF182FGY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF199GLL bed narrowPeak conservative idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF094CFJ, ENCFF122CCT, ENCFF419RSJ, ENCFF847HKF 637973 ENCODE Processing Pipeline cc12ecf94e67b50a146a95d48c89dfdf https://www.encodeproject.org/files/ENCFF199GLL/@@download/ENCFF199GLL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF744PXO bed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF094CFJ, ENCFF122CCT, ENCFF419RSJ, ENCFF847HKF 784466 ENCODE Processing Pipeline 5a4abf5b8bc8a54cc2d45a38dcd710f0 https://www.encodeproject.org/files/ENCFF744PXO/@@download/ENCFF744PXO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF917FVM bigWig signal p-value ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF535QXZ, ENCFF699UTE, ENCFF803JSH 585009903 ENCODE Processing Pipeline 14f9b6bb26ba62a9760a397e44439d49 https://www.encodeproject.org/files/ENCFF917FVM/@@download/ENCFF917FVM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF887FZI bigWig fold change over control ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF299JTX, ENCFF535QXZ, ENCFF699UTE, ENCFF803JSH 429627827 ENCODE Processing Pipeline d3e712fafad9d94f11a3390cf5182947 https://www.encodeproject.org/files/ENCFF887FZI/@@download/ENCFF887FZI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF449XEB bigBed narrowPeak conservative idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF199GLL 1115356 ENCODE Processing Pipeline 12105a80d4ef60996b2efd9a4afd9df1 https://www.encodeproject.org/files/ENCFF449XEB/@@download/ENCFF449XEB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF757QYJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF744PXO 1299670 ENCODE Processing Pipeline 89dd3acbcfc74cefd22e8c93253d7d68 https://www.encodeproject.org/files/ENCFF757QYJ/@@download/ENCFF757QYJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF000CAP bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 1 1 1146121122 Bradley Bernstein, Broad c489d05e6d16934f6ebc91a29f7bd182 https://www.encodeproject.org/files/ENCFF000CAP/@@download/ENCFF000CAP.bam hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, mismatched status, missing raw data in replicate insufficient replicate concordance ENCFF000CAQ bigBed broadPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SZX 1835819 Bradley Bernstein, Broad 4eeeccc20d2d0464c2701a73f9a495c4 https://www.encodeproject.org/files/ENCFF000CAQ/@@download/ENCFF000CAQ.bigBed hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF000CAR bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 1 860223219 Bradley Bernstein, Broad c8ffae3ad040d6e35e614db06b4ada1d https://www.encodeproject.org/files/ENCFF000CAR/@@download/ENCFF000CAR.bam hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF000CAT bigWig signal ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 332421915 Bradley Bernstein, Broad 5a482b444a2028ebff3762b88403a03e https://www.encodeproject.org/files/ENCFF000CAT/@@download/ENCFF000CAT.bigWig hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF000CBB fastq reads ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1323006296 Bradley Bernstein, Broad 3580a915c4997dc3081b368472867fa9 https://www.encodeproject.org/files/ENCFF000CBB/@@download/ENCFF000CBB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF001SZX bed broadPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 912359 Bradley Bernstein, Broad ac17c190d3ee41737ebe9351f8e5f310 https://www.encodeproject.org/files/ENCFF001SZX/@@download/ENCFF001SZX.bed.gz hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF002CER bed narrowPeak optimal idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 471008 ENCODE Consortium Analysis Working Group 72b25cc6efcdb2305f20e2fcdad29a58 https://www.encodeproject.org/files/ENCFF002CER/@@download/ENCFF002CER.bed.gz hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF004YQN bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CER 1300328 ENCODE Consortium 2357d2d2ef62941fedf2fa00a2e58eec https://www.encodeproject.org/files/ENCFF004YQN/@@download/ENCFF004YQN.bigBed hg19 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF461XDG fastq reads ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1131203010 Bradley Bernstein, Broad 157b13eee18bb99c9dd04a63937add67 https://www.encodeproject.org/files/ENCFF461XDG/@@download/ENCFF461XDG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF931EAU fastq reads ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 4 1 25 paired-ended 2 ENCFF205QLX 650624854 Bradley Bernstein, Broad a2abecf60fee18ee9e66713af69587f3 https://www.encodeproject.org/files/ENCFF931EAU/@@download/ENCFF931EAU.fastq.gz Illumina HiSeq 2500 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate missing controlled_by, insufficient replicate concordance ENCFF205QLX fastq reads ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 4 1 36 paired-ended 1 ENCFF931EAU 819585056 Bradley Bernstein, Broad 0a94ab003020f87635a7ebf646d63e35 https://www.encodeproject.org/files/ENCFF205QLX/@@download/ENCFF205QLX.fastq.gz Illumina HiSeq 2500 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate missing controlled_by, insufficient replicate concordance ENCFF592RSM fastq reads ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 2 ENCFF609HJW 935669136 Bradley Bernstein, Broad c2ea42abd20d4b68b4dff0621240fbab https://www.encodeproject.org/files/ENCFF592RSM/@@download/ENCFF592RSM.fastq.gz Illumina HiSeq 2500 archived low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate missing controlled_by, insufficient replicate concordance ENCFF609HJW fastq reads ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 1 36 paired-ended 1 ENCFF592RSM 1193111743 Bradley Bernstein, Broad 97b87943c05c8739639c2087347ad2db https://www.encodeproject.org/files/ENCFF609HJW/@@download/ENCFF609HJW.fastq.gz Illumina HiSeq 2500 /files/ENCFF156ECZ/, /files/ENCFF561WFK/ released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity mismatched status, missing raw data in replicate insufficient replicate concordance ENCFF387ZPG bam unfiltered alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CBB, ENCFF461XDG, ENCFF643CGH 3053827794 ENCODE Processing Pipeline 518d2ef2944a9cd1d9d297e10b567a4f https://www.encodeproject.org/files/ENCFF387ZPG/@@download/ENCFF387ZPG.bam GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF509IQQ bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CBB, ENCFF461XDG, ENCFF643CGH 1142085296 ENCODE Processing Pipeline 89c82da369cc74d9ef7377d82e03ca85 https://www.encodeproject.org/files/ENCFF509IQQ/@@download/ENCFF509IQQ.bam GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF845EFA bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CBB, ENCFF461XDG, ENCFF807MUK 1142886140 ENCODE Processing Pipeline bebaad9428d5b407470a74d4701b2282 https://www.encodeproject.org/files/ENCFF845EFA/@@download/ENCFF845EFA.bam hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF228ATX bam unfiltered alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CBB, ENCFF461XDG, ENCFF807MUK 3043577309 ENCODE Processing Pipeline 8b072bdefdaced88cb89abe4ac47dc37 https://www.encodeproject.org/files/ENCFF228ATX/@@download/ENCFF228ATX.bam hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF666RSM bam unfiltered alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 36 ENCFF609HJW, ENCFF807MUK 1692762946 ENCODE Processing Pipeline 11d4d9e804f6d8bc72c384abcd0fa4db https://www.encodeproject.org/files/ENCFF666RSM/@@download/ENCFF666RSM.bam hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF302WSZ bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 36 ENCFF609HJW, ENCFF643CGH 1108389224 ENCODE Processing Pipeline cde2e988048879f8c5b79d0e4611bd9c https://www.encodeproject.org/files/ENCFF302WSZ/@@download/ENCFF302WSZ.bam GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF121RMK bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 36 ENCFF609HJW, ENCFF807MUK 1108864530 ENCODE Processing Pipeline a03b8419f659703157f27b73d3166d37 https://www.encodeproject.org/files/ENCFF121RMK/@@download/ENCFF121RMK.bam hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF741XCT bam unfiltered alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 36 ENCFF609HJW, ENCFF643CGH 1703772115 ENCODE Processing Pipeline 0c57255733c8df0f8a2694d9a32a8d3b https://www.encodeproject.org/files/ENCFF741XCT/@@download/ENCFF741XCT.bam GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF785NZH bigWig signal p-value ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP 587178615 ENCODE Processing Pipeline fcf74bf6a4c9bc3362a95fa2ea9b25ba https://www.encodeproject.org/files/ENCFF785NZH/@@download/ENCFF785NZH.bigWig hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF400KUD bigWig fold change over control ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP 695546778 ENCODE Processing Pipeline a698db75b0bc79c41bc20ae128cc97fc https://www.encodeproject.org/files/ENCFF400KUD/@@download/ENCFF400KUD.bigWig hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF100WXV bed narrowPeak conservative idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF001TDO, ENCFF192RQZ, ENCFF430CBL, ENCFF739TWP 257274 ENCODE Processing Pipeline ab28ccd801d27dbd54fb35b2382fc226 https://www.encodeproject.org/files/ENCFF100WXV/@@download/ENCFF100WXV.bed.gz hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF626KTJ bed narrowPeak optimal idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF001TDO, ENCFF192RQZ, ENCFF430CBL, ENCFF739TWP 514874 ENCODE Processing Pipeline cd4e59b9e70e529ce4a9b478d544124a https://www.encodeproject.org/files/ENCFF626KTJ/@@download/ENCFF626KTJ.bed.gz hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF427QTV bigWig fold change over control ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 985973695 ENCODE Processing Pipeline c9beab9a2e75cf534b0526669ec8a8ea https://www.encodeproject.org/files/ENCFF427QTV/@@download/ENCFF427QTV.bigWig hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF739TWP bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 6501404 ENCODE Processing Pipeline 860d76c0cd5d8dcce10658f8a1dcfaa6 https://www.encodeproject.org/files/ENCFF739TWP/@@download/ENCFF739TWP.bed.gz hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF192RQZ bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 6995318 ENCODE Processing Pipeline 10501d436f31125cd55d5c35f81a0041 https://www.encodeproject.org/files/ENCFF192RQZ/@@download/ENCFF192RQZ.bed.gz hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF444YMV bigBed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF430CBL 13409862 ENCODE Processing Pipeline 6733434571b06a879db6210eedd50193 https://www.encodeproject.org/files/ENCFF444YMV/@@download/ENCFF444YMV.bigBed hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF430CBL bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP 5748212 ENCODE Processing Pipeline ca3f630f6788e9fdfc49f5649995d014 https://www.encodeproject.org/files/ENCFF430CBL/@@download/ENCFF430CBL.bed.gz hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF982OPG bigBed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF192RQZ 13316021 ENCODE Processing Pipeline e35002cba172b14e471d75e413b6be79 https://www.encodeproject.org/files/ENCFF982OPG/@@download/ENCFF982OPG.bigBed hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF241UPO bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF626KTJ 1395595 ENCODE Processing Pipeline 3a38cde355c087a4b6c45a75a7fb5d0a https://www.encodeproject.org/files/ENCFF241UPO/@@download/ENCFF241UPO.bigBed hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF756UVZ bigWig fold change over control ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF509IQQ, ENCFF829HZY, ENCFF893MMO 493552223 ENCODE Processing Pipeline 8790c6d57973ca40e82c4f9f28cba8e8 https://www.encodeproject.org/files/ENCFF756UVZ/@@download/ENCFF756UVZ.bigWig GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF033ARN bigWig signal p-value ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 671067308 ENCODE Processing Pipeline 5f55d2cbe0323bb767706591288f8c4c https://www.encodeproject.org/files/ENCFF033ARN/@@download/ENCFF033ARN.bigWig hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF140HPP bigWig fold change over control ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 494033454 ENCODE Processing Pipeline 3477dc0f58be7d049fbce235ea9206da https://www.encodeproject.org/files/ENCFF140HPP/@@download/ENCFF140HPP.bigWig hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF594ZHW bigWig signal p-value ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 854943923 ENCODE Processing Pipeline 74db03f60b030af1053ac8581de574c4 https://www.encodeproject.org/files/ENCFF594ZHW/@@download/ENCFF594ZHW.bigWig hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF541UBY bigBed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF739TWP 12945132 ENCODE Processing Pipeline 5c80bb67baf9c8557bb87365efb6afb4 https://www.encodeproject.org/files/ENCFF541UBY/@@download/ENCFF541UBY.bigBed hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF860HRF bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF100WXV 788111 ENCODE Processing Pipeline 8a1ba4a4e1873ac781fbb7e239c412d6 https://www.encodeproject.org/files/ENCFF860HRF/@@download/ENCFF860HRF.bigBed hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF913SYY bigWig signal p-value ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF302WSZ, ENCFF509IQQ, ENCFF829HZY, ENCFF893MMO 840498935 ENCODE Processing Pipeline 92373ce2ea2a40630163559312305948 https://www.encodeproject.org/files/ENCFF913SYY/@@download/ENCFF913SYY.bigWig GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF973ABC bigBed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF460IWD 12957293 ENCODE Processing Pipeline d7988877accc5808e99016f670ed91aa https://www.encodeproject.org/files/ENCFF973ABC/@@download/ENCFF973ABC.bigBed GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF619ZYB bigBed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF250MHG 13427982 ENCODE Processing Pipeline 57f9412b175412f7e1448d73fc5adeb6 https://www.encodeproject.org/files/ENCFF619ZYB/@@download/ENCFF619ZYB.bigBed GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF754RGW bigBed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF952YYL 13311868 ENCODE Processing Pipeline 6a5bacdabf2bb671fbf5bb36c9c36d53 https://www.encodeproject.org/files/ENCFF754RGW/@@download/ENCFF754RGW.bigBed GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF581VHB bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF225IZQ 796470 ENCODE Processing Pipeline 38ba9a1d4820d9278d4984be0b32fd56 https://www.encodeproject.org/files/ENCFF581VHB/@@download/ENCFF581VHB.bigBed GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF124NVZ bigWig signal p-value ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF509IQQ, ENCFF829HZY, ENCFF893MMO 645066098 ENCODE Processing Pipeline bec98baff5c288728bb716d3a429af97 https://www.encodeproject.org/files/ENCFF124NVZ/@@download/ENCFF124NVZ.bigWig GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF414RIR bigWig fold change over control ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF302WSZ, ENCFF509IQQ, ENCFF829HZY, ENCFF893MMO 968783307 ENCODE Processing Pipeline 98823207772c5551175609fce83dc718 https://www.encodeproject.org/files/ENCFF414RIR/@@download/ENCFF414RIR.bigWig GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF952YYL bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF302WSZ, ENCFF509IQQ, ENCFF829HZY, ENCFF893MMO 6985074 ENCODE Processing Pipeline 9ecea3e906c483200974c5509a175081 https://www.encodeproject.org/files/ENCFF952YYL/@@download/ENCFF952YYL.bed.gz GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF952YDR bed narrowPeak optimal idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF250MHG, ENCFF419RSJ, ENCFF460IWD, ENCFF952YYL 507030 ENCODE Processing Pipeline 93137eae8a0a7e4817a43790e41b0849 https://www.encodeproject.org/files/ENCFF952YDR/@@download/ENCFF952YDR.bed.gz GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF259PAD bigWig signal p-value ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF302WSZ, ENCFF829HZY, ENCFF893MMO 740758799 ENCODE Processing Pipeline d2f6273d0a0f598929d18214cfbf7e03 https://www.encodeproject.org/files/ENCFF259PAD/@@download/ENCFF259PAD.bigWig GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF184LSS bigWig fold change over control ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF302WSZ, ENCFF829HZY, ENCFF893MMO 670869390 ENCODE Processing Pipeline 5fe8d6c7065a37d308cbbd79623b7765 https://www.encodeproject.org/files/ENCFF184LSS/@@download/ENCFF184LSS.bigWig GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF250MHG bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 ENCFF302WSZ, ENCFF829HZY, ENCFF893MMO 5597610 ENCODE Processing Pipeline 58906dff9cc275b97776b0ff2fcf64e8 https://www.encodeproject.org/files/ENCFF250MHG/@@download/ENCFF250MHG.bed.gz GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF225IZQ bed narrowPeak conservative idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF250MHG, ENCFF419RSJ, ENCFF460IWD, ENCFF952YYL 260477 ENCODE Processing Pipeline f006d8e7bbc432bde7a13efd4c5c8639 https://www.encodeproject.org/files/ENCFF225IZQ/@@download/ENCFF225IZQ.bed.gz GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF708OCF bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF952YDR 1381558 ENCODE Processing Pipeline 4712746794e20f8434c0102b922c883d https://www.encodeproject.org/files/ENCFF708OCF/@@download/ENCFF708OCF.bigBed GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF460IWD bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF509IQQ, ENCFF829HZY, ENCFF893MMO 6500610 ENCODE Processing Pipeline 92b2a0783bec6379ed050421e7f6fc4f https://www.encodeproject.org/files/ENCFF460IWD/@@download/ENCFF460IWD.bed.gz GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF000RXY bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RYN 421389853 Vishwanath Iyer, UTA 1edc8df00f57370a6da6b3bda092c23a https://www.encodeproject.org/files/ENCFF000RXY/@@download/ENCFF000RXY.bam hg19 archived mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF000RXZ bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RYL 292890134 Vishwanath Iyer, UTA 20f031ea3c14e96b52379119f202fa9e https://www.encodeproject.org/files/ENCFF000RXZ/@@download/ENCFF000RXZ.bam hg19 archived mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF000RYA bigWig base overlap signal ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 927099987 Vishwanath Iyer, UTA 6e878d8eaf71bf02c3c90ab4f3ad4c74 https://www.encodeproject.org/files/ENCFF000RYA/@@download/ENCFF000RYA.bigWig hg19 archived mild to moderate bottlenecking missing derived_from control extremely low read depth, extremely low read depth ENCFF000RYC bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTJ 1945281 Vishwanath Iyer, UTA f6ab1bc71965a44bfb9453e90e935b3e https://www.encodeproject.org/files/ENCFF000RYC/@@download/ENCFF000RYC.bigBed hg19 archived mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF000RYD bigWig signal ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 3719884874 Vishwanath Iyer, UTA 82fb9e24e141651cad30fde83edf300f https://www.encodeproject.org/files/ENCFF000RYD/@@download/ENCFF000RYD.bigWig hg19 archived mild to moderate bottlenecking missing derived_from control extremely low read depth, extremely low read depth ENCFF000RYL fastq reads ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 1 51 single-ended 384702287 Vishwanath Iyer, UTA 0d1357083494235ac82dfc9e8e5348c2 https://www.encodeproject.org/files/ENCFF000RYL/@@download/ENCFF000RYL.fastq.gz Illumina Genome Analyzer /files/ENCFF000RYV/ released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF000RYN fastq reads ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 51 single-ended 616033204 Vishwanath Iyer, UTA e9e250edea446c143e44a688fa939d20 https://www.encodeproject.org/files/ENCFF000RYN/@@download/ENCFF000RYN.fastq.gz Illumina Genome Analyzer /files/ENCFF000RYV/ released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF001UTJ bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1157394 Vishwanath Iyer, UTA 8f64283db264f5c1c21ae25f6526d502 https://www.encodeproject.org/files/ENCFF001UTJ/@@download/ENCFF001UTJ.bed.gz hg19 archived mild to moderate bottlenecking missing derived_from control extremely low read depth, extremely low read depth ENCFF669QGZ bam unfiltered alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RYN, ENCFF807MUK 689895657 ENCODE Processing Pipeline 4ba457665d117015ee4b2fa6df1afe20 https://www.encodeproject.org/files/ENCFF669QGZ/@@download/ENCFF669QGZ.bam hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF896LIL bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RYN, ENCFF807MUK 239414329 ENCODE Processing Pipeline 4ce1a2c73ae420a23893f5955447296a https://www.encodeproject.org/files/ENCFF896LIL/@@download/ENCFF896LIL.bam hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF026BGK bam unfiltered alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYL, ENCFF807MUK 436699635 ENCODE Processing Pipeline f9e88f01c9f1f0a4749d1887e07a51d3 https://www.encodeproject.org/files/ENCFF026BGK/@@download/ENCFF026BGK.bam hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF635ZTX bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYL, ENCFF807MUK 170973751 ENCODE Processing Pipeline 1c524837e4d0fc32848f8cdc3efae924 https://www.encodeproject.org/files/ENCFF635ZTX/@@download/ENCFF635ZTX.bam hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF834XJR bam unfiltered alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RYN, ENCFF643CGH 690908310 ENCODE Processing Pipeline 5762ca1635e7a3b6f591ce56cabcafa2 https://www.encodeproject.org/files/ENCFF834XJR/@@download/ENCFF834XJR.bam GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF266UHU bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RYN, ENCFF643CGH 239210535 ENCODE Processing Pipeline 1be18aed33cf94cf410aab92c80c7eca https://www.encodeproject.org/files/ENCFF266UHU/@@download/ENCFF266UHU.bam GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF801HDI bam unfiltered alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYL, ENCFF643CGH 437351576 ENCODE Processing Pipeline 8854417302cbe144a310b030699adedc https://www.encodeproject.org/files/ENCFF801HDI/@@download/ENCFF801HDI.bam GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF111YZR bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYL, ENCFF643CGH 170854908 ENCODE Processing Pipeline 327dfc3feeaabea6b6e0d00bd97da4f2 https://www.encodeproject.org/files/ENCFF111YZR/@@download/ENCFF111YZR.bam GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF612UNT bigWig fold change over control ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF635ZTX, ENCFF882SRJ 43054884 ENCODE Processing Pipeline 97920219e0edaf82223ba877ec43a1d9 https://www.encodeproject.org/files/ENCFF612UNT/@@download/ENCFF612UNT.bigWig hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF166TXF bed narrowPeak conservative idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF202BTH, ENCFF306ACX, ENCFF553SJU 339415 ENCODE Processing Pipeline dc8ae19d9f82c88adf9ba2c3429bd824 https://www.encodeproject.org/files/ENCFF166TXF/@@download/ENCFF166TXF.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF549SMT bigWig signal p-value ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF882SRJ, ENCFF896LIL 97226457 ENCODE Processing Pipeline 7d87ba55dd054b6cfdd964731e2909af https://www.encodeproject.org/files/ENCFF549SMT/@@download/ENCFF549SMT.bigWig hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF022JNP bigWig signal p-value ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF635ZTX, ENCFF882SRJ, ENCFF896LIL 104060481 ENCODE Processing Pipeline 5a510ab5a80d5723d3cc4a67bb79619c https://www.encodeproject.org/files/ENCFF022JNP/@@download/ENCFF022JNP.bigWig hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF521AGU bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF306ACX 1599786 ENCODE Processing Pipeline 23633e0a2e0ce80dcd0af63e366ec863 https://www.encodeproject.org/files/ENCFF521AGU/@@download/ENCFF521AGU.bigBed hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF168QKM bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF553SJU 4630452 ENCODE Processing Pipeline 630648381cf653c40785272268005016 https://www.encodeproject.org/files/ENCFF168QKM/@@download/ENCFF168QKM.bigBed hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF366BEJ bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF202BTH 2229583 ENCODE Processing Pipeline 89301e84987edadd0bc0553f96d13149 https://www.encodeproject.org/files/ENCFF366BEJ/@@download/ENCFF366BEJ.bigBed hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF694SEF bed narrowPeak optimal idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF202BTH, ENCFF306ACX, ENCFF553SJU 349464 ENCODE Processing Pipeline b1dde7461d8305cdcaa652804ba6b72d https://www.encodeproject.org/files/ENCFF694SEF/@@download/ENCFF694SEF.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF693XGZ bigWig fold change over control ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF882SRJ, ENCFF896LIL 57297238 ENCODE Processing Pipeline 259bd3f330e40ce2ddd6968390498df0 https://www.encodeproject.org/files/ENCFF693XGZ/@@download/ENCFF693XGZ.bigWig hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF279QNE bigWig signal p-value ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF635ZTX, ENCFF882SRJ 88122088 ENCODE Processing Pipeline 2fd0d5b6ab8e199d5067767e615e4c41 https://www.encodeproject.org/files/ENCFF279QNE/@@download/ENCFF279QNE.bigWig hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF250GDD bigWig fold change over control ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF635ZTX, ENCFF882SRJ, ENCFF896LIL 96665038 ENCODE Processing Pipeline 52af4a4cdfd88e6a7a041f85d7e82714 https://www.encodeproject.org/files/ENCFF250GDD/@@download/ENCFF250GDD.bigWig hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF553SJU bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF635ZTX, ENCFF882SRJ, ENCFF896LIL 2305584 ENCODE Processing Pipeline 533f92bb198632e39a3865e1171af381 https://www.encodeproject.org/files/ENCFF553SJU/@@download/ENCFF553SJU.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF324CNE bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF166TXF 532596 ENCODE Processing Pipeline 58ab5e762c63bad35ebd0e52b34a9cd2 https://www.encodeproject.org/files/ENCFF324CNE/@@download/ENCFF324CNE.bigBed hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF907KJS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF694SEF 544396 ENCODE Processing Pipeline 6a8f2562fa6175bae60984def001b2dd https://www.encodeproject.org/files/ENCFF907KJS/@@download/ENCFF907KJS.bigBed hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF590NWD bigWig signal p-value ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF266UHU, ENCFF923ZIK 97210777 ENCODE Processing Pipeline c9daf0ff0659882841052cbde2152fdd https://www.encodeproject.org/files/ENCFF590NWD/@@download/ENCFF590NWD.bigWig GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF850RZW bigWig signal p-value ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF111YZR, ENCFF923ZIK 86241304 ENCODE Processing Pipeline c9056956281ddaf29552f73cfd951300 https://www.encodeproject.org/files/ENCFF850RZW/@@download/ENCFF850RZW.bigWig GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF306ACX bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF635ZTX, ENCFF882SRJ 839058 ENCODE Processing Pipeline d895e44989811c1f600d9f1c3e6f5865 https://www.encodeproject.org/files/ENCFF306ACX/@@download/ENCFF306ACX.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF936XRK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF139RCX 747107 ENCODE Processing Pipeline 444dc608698021cc2e85c90cb41c8629 https://www.encodeproject.org/files/ENCFF936XRK/@@download/ENCFF936XRK.bigBed GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF310DHG bigWig fold change over control ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF266UHU, ENCFF923ZIK 57244297 ENCODE Processing Pipeline 0a3082e89bd6c5f762b1e985667d0f52 https://www.encodeproject.org/files/ENCFF310DHG/@@download/ENCFF310DHG.bigWig GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF880FIA bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF419PER 2946128 ENCODE Processing Pipeline 03b9c8fe8121511b1ca7b7b9e95fbf28 https://www.encodeproject.org/files/ENCFF880FIA/@@download/ENCFF880FIA.bigBed GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF639DDP bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144JNX 4787453 ENCODE Processing Pipeline 16c23b03548a2b71e2544de5e71b4e5c https://www.encodeproject.org/files/ENCFF639DDP/@@download/ENCFF639DDP.bigBed GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF139RCX bed narrowPeak optimal idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144JNX, ENCFF419PER, ENCFF419RSJ, ENCFF962VDE 383443 ENCODE Processing Pipeline bf3bc1cd96e7e764e16490ed52ac2944 https://www.encodeproject.org/files/ENCFF139RCX/@@download/ENCFF139RCX.bed.gz GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF202BTH bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF882SRJ, ENCFF896LIL 1250139 ENCODE Processing Pipeline 7eae5414e76070f87f5e76fe0d4984de https://www.encodeproject.org/files/ENCFF202BTH/@@download/ENCFF202BTH.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF502BFF bigWig signal p-value ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF111YZR, ENCFF266UHU, ENCFF923ZIK 104031107 ENCODE Processing Pipeline 7da85cdca9f6b347054e81f7996e7713 https://www.encodeproject.org/files/ENCFF502BFF/@@download/ENCFF502BFF.bigWig GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF856ACF bigWig fold change over control ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF111YZR, ENCFF923ZIK 43105529 ENCODE Processing Pipeline dfb61e61a30c71f22751a693f57750f8 https://www.encodeproject.org/files/ENCFF856ACF/@@download/ENCFF856ACF.bigWig GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF962VDE bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF111YZR, ENCFF923ZIK 868884 ENCODE Processing Pipeline dd2268387cd10dca4dee2ca5159c292d https://www.encodeproject.org/files/ENCFF962VDE/@@download/ENCFF962VDE.bed.gz GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF285PKZ bigBed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF962VDE 1680906 ENCODE Processing Pipeline 29342c727e723b860f07219d2e2bc105 https://www.encodeproject.org/files/ENCFF285PKZ/@@download/ENCFF285PKZ.bigBed GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF281OWZ bed narrowPeak conservative idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF144JNX, ENCFF419PER, ENCFF419RSJ, ENCFF962VDE 368987 ENCODE Processing Pipeline 2eee55ee0452583fe1b65607e043edf5 https://www.encodeproject.org/files/ENCFF281OWZ/@@download/ENCFF281OWZ.bed.gz GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF625QIN bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF281OWZ 590357 ENCODE Processing Pipeline 7ae1493c03433fc10dbcfe69410a2ee9 https://www.encodeproject.org/files/ENCFF625QIN/@@download/ENCFF625QIN.bigBed GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF763NIU bigWig fold change over control ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF111YZR, ENCFF266UHU, ENCFF923ZIK 96604426 ENCODE Processing Pipeline cf5f9d5e8066dc413a531ee945edd546 https://www.encodeproject.org/files/ENCFF763NIU/@@download/ENCFF763NIU.bigWig GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF419PER bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF266UHU, ENCFF923ZIK 1328815 ENCODE Processing Pipeline 125e76264db58f9b1c71a1e9c13b07eb https://www.encodeproject.org/files/ENCFF419PER/@@download/ENCFF419PER.bed.gz GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF144JNX bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF111YZR, ENCFF266UHU, ENCFF923ZIK 2392640 ENCODE Processing Pipeline b67002be420721da4db58493bcae6312 https://www.encodeproject.org/files/ENCFF144JNX/@@download/ENCFF144JNX.bed.gz GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF000SAQ bigWig base overlap signal ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 510487967 Vishwanath Iyer, UTA ed38d8e86f9e258032408d67e82d6517 https://www.encodeproject.org/files/ENCFF000SAQ/@@download/ENCFF000SAQ.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF000SAR bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000SAY 1369033102 Vishwanath Iyer, UTA 2394c7f6cfc5681ce37eb68b7b6f8d87 https://www.encodeproject.org/files/ENCFF000SAR/@@download/ENCFF000SAR.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000SAS bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTS 2275929 Vishwanath Iyer, UTA 059bd25f3980098b4705626f7985fbc6 https://www.encodeproject.org/files/ENCFF000SAS/@@download/ENCFF000SAS.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000SAT bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000SAX 1280789942 Vishwanath Iyer, UTA 82b289023adaad17b34ed589d53c8775 https://www.encodeproject.org/files/ENCFF000SAT/@@download/ENCFF000SAT.bam hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000SAU bigWig signal ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 4952170786 Vishwanath Iyer, UTA 8452bed735ecf46f2725287e9bae18ba https://www.encodeproject.org/files/ENCFF000SAU/@@download/ENCFF000SAU.bigWig hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF000SAX fastq reads ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1212496535 Vishwanath Iyer, UTA e5a1de99ebb821a6d89fdb876c44be75 https://www.encodeproject.org/files/ENCFF000SAX/@@download/ENCFF000SAX.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000SAY fastq reads ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1312552348 Vishwanath Iyer, UTA 0a6bdde8340853b0651ae5374b6db476 https://www.encodeproject.org/files/ENCFF000SAY/@@download/ENCFF000SAY.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001UTS bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1492351 Vishwanath Iyer, UTA ad2972e4ab6e0b01298aef5d8a8eae23 https://www.encodeproject.org/files/ENCFF001UTS/@@download/ENCFF001UTS.bed.gz hg19 archived low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF002DBN bed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1753435 ENCODE Consortium Analysis Working Group 496fbddea93ea78e80800d1806a16089 https://www.encodeproject.org/files/ENCFF002DBN/@@download/ENCFF002DBN.bed.gz hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF320TZB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBN 3429368 ENCODE Consortium ac3d6f7c045ab51b65b6b675576fe12a https://www.encodeproject.org/files/ENCFF320TZB/@@download/ENCFF320TZB.bigBed hg19 archived low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF565XXO bam unfiltered alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAY, ENCFF643CGH 1751312672 ENCODE Processing Pipeline c9d887e41b67246a34833a6d8ffaa383 https://www.encodeproject.org/files/ENCFF565XXO/@@download/ENCFF565XXO.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF232NLC bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAX, ENCFF643CGH 962167867 ENCODE Processing Pipeline e2be5f067591e3709b987152c48f42a3 https://www.encodeproject.org/files/ENCFF232NLC/@@download/ENCFF232NLC.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF256JNK bam unfiltered alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAX, ENCFF643CGH 1628029032 ENCODE Processing Pipeline 34260880b8f44bd89b107f595b6524aa https://www.encodeproject.org/files/ENCFF256JNK/@@download/ENCFF256JNK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF854DIW bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAY, ENCFF643CGH 1028961736 ENCODE Processing Pipeline fed7377290a802ee79023d98f98c7a03 https://www.encodeproject.org/files/ENCFF854DIW/@@download/ENCFF854DIW.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF262EWQ bam unfiltered alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAX, ENCFF807MUK 1620441439 ENCODE Processing Pipeline 2e7fc7626dae460d6434d7aaf710a5ef https://www.encodeproject.org/files/ENCFF262EWQ/@@download/ENCFF262EWQ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF873YCC bam unfiltered alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAY, ENCFF807MUK 1742488918 ENCODE Processing Pipeline 82d3abb1654733054af42a34f74acca5 https://www.encodeproject.org/files/ENCFF873YCC/@@download/ENCFF873YCC.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF823CUE bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAY, ENCFF807MUK 1029493281 ENCODE Processing Pipeline 508d6b5aaf2f10053b8b7ccfd6b15948 https://www.encodeproject.org/files/ENCFF823CUE/@@download/ENCFF823CUE.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF550HPW bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAX, ENCFF807MUK 962647237 ENCODE Processing Pipeline 617349296f36a6aa5d4dc829015de924 https://www.encodeproject.org/files/ENCFF550HPW/@@download/ENCFF550HPW.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF144MCU bigWig signal p-value ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF854DIW, ENCFF946WAV 512686087 ENCODE Processing Pipeline e8bcbe51eb494bbf3bb8b06abf2809b0 https://www.encodeproject.org/files/ENCFF144MCU/@@download/ENCFF144MCU.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF547RTA bigWig signal p-value ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF232NLC, ENCFF946WAV 505383920 ENCODE Processing Pipeline ee1f60b6d97af794f164e7c267baf329 https://www.encodeproject.org/files/ENCFF547RTA/@@download/ENCFF547RTA.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF237BZX bigWig signal p-value ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF232NLC, ENCFF854DIW, ENCFF946WAV 505094722 ENCODE Processing Pipeline d7ea6fd7fc68491ae95cd608cc94deab https://www.encodeproject.org/files/ENCFF237BZX/@@download/ENCFF237BZX.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF686RYR bigWig fold change over control ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF854DIW, ENCFF946WAV 518482859 ENCODE Processing Pipeline cc1702f1cc39673e629ee08f758e0db8 https://www.encodeproject.org/files/ENCFF686RYR/@@download/ENCFF686RYR.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF049XZI bigWig fold change over control ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF232NLC, ENCFF946WAV 500243114 ENCODE Processing Pipeline c9fb374d748442ce646b76b9b4e2f654 https://www.encodeproject.org/files/ENCFF049XZI/@@download/ENCFF049XZI.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF849IUY bigWig fold change over control ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF232NLC, ENCFF854DIW, ENCFF946WAV 820315618 ENCODE Processing Pipeline 120d6f443c3d23d25ed6d108aceaed14 https://www.encodeproject.org/files/ENCFF849IUY/@@download/ENCFF849IUY.bigWig GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF022OYE bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF854DIW, ENCFF946WAV 5398773 ENCODE Processing Pipeline fdd4dcbd3027d3ae4e88bc5973b8e36f https://www.encodeproject.org/files/ENCFF022OYE/@@download/ENCFF022OYE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF062CMA bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF232NLC, ENCFF946WAV 5361318 ENCODE Processing Pipeline fdd2801cec4fea3d1f0e712750425f4d https://www.encodeproject.org/files/ENCFF062CMA/@@download/ENCFF062CMA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF915MSL bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF608QMW 11982656 ENCODE Processing Pipeline 8fe229de700d4cacbe2b5338a9883ecf https://www.encodeproject.org/files/ENCFF915MSL/@@download/ENCFF915MSL.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF662JXJ bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF022OYE 11734424 ENCODE Processing Pipeline 618052ef4da29e43d8a238925a384ad9 https://www.encodeproject.org/files/ENCFF662JXJ/@@download/ENCFF662JXJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF608QMW bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF232NLC, ENCFF854DIW, ENCFF946WAV 6155642 ENCODE Processing Pipeline 0bfc270ba628d95bc94138f152ec0045 https://www.encodeproject.org/files/ENCFF608QMW/@@download/ENCFF608QMW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF401WRE bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF062CMA 11661334 ENCODE Processing Pipeline 4c2a394c629cfeec1d373722edeb4040 https://www.encodeproject.org/files/ENCFF401WRE/@@download/ENCFF401WRE.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF785NTC bed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF022OYE, ENCFF062CMA, ENCFF419RSJ, ENCFF608QMW 1333967 ENCODE Processing Pipeline 892f4b850dff9fb7aa09d2ebbc4e84ba https://www.encodeproject.org/files/ENCFF785NTC/@@download/ENCFF785NTC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF198DQX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF785NTC 2218768 ENCODE Processing Pipeline 4d3ff06e0629a3c62bdbb96fffa2a29e https://www.encodeproject.org/files/ENCFF198DQX/@@download/ENCFF198DQX.bigBed GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF574PXY bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF550HPW, ENCFF602XLT 5361804 ENCODE Processing Pipeline 494a83e3918dc7ece687d8a71a1106ff https://www.encodeproject.org/files/ENCFF574PXY/@@download/ENCFF574PXY.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF745DXN bigWig signal p-value ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF550HPW, ENCFF602XLT 505506927 ENCODE Processing Pipeline c64fba5a72529e72714b4c184babb845 https://www.encodeproject.org/files/ENCFF745DXN/@@download/ENCFF745DXN.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF445GEI bigWig signal p-value ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF823CUE 512811523 ENCODE Processing Pipeline b9266d6d2d62609ea79d9a65d50066d6 https://www.encodeproject.org/files/ENCFF445GEI/@@download/ENCFF445GEI.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF853XFI bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF823CUE 5398649 ENCODE Processing Pipeline e1d166f3632183ab863b5f6a928269f3 https://www.encodeproject.org/files/ENCFF853XFI/@@download/ENCFF853XFI.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF329QMW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF176YNV 2215963 ENCODE Processing Pipeline 1e5afbe6161cd3f5611cc203abc5475d https://www.encodeproject.org/files/ENCFF329QMW/@@download/ENCFF329QMW.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF204VVO bigWig fold change over control ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF823CUE 522344156 ENCODE Processing Pipeline f69cd791dc1796e5ed1bdea4bd2b8405 https://www.encodeproject.org/files/ENCFF204VVO/@@download/ENCFF204VVO.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF373JMC bigWig signal p-value ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF550HPW, ENCFF602XLT, ENCFF823CUE 505238429 ENCODE Processing Pipeline 06c64d906431742b83b3a6d0c5149dc1 https://www.encodeproject.org/files/ENCFF373JMC/@@download/ENCFF373JMC.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF631EUP bigWig fold change over control ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF550HPW, ENCFF602XLT 503805252 ENCODE Processing Pipeline a53e5150ed79b2cfabdbe62bdfadbf8f https://www.encodeproject.org/files/ENCFF631EUP/@@download/ENCFF631EUP.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF738MLO bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF853XFI 11728030 ENCODE Processing Pipeline 30f58105a645e9c12bacf88eae04d911 https://www.encodeproject.org/files/ENCFF738MLO/@@download/ENCFF738MLO.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF993IKO bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF550HPW, ENCFF602XLT, ENCFF823CUE 6157984 ENCODE Processing Pipeline 6bc6d75387a19c99f2f72e66fe73b869 https://www.encodeproject.org/files/ENCFF993IKO/@@download/ENCFF993IKO.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF112LJI bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF574PXY 11658559 ENCODE Processing Pipeline 41d6ef1f6292fa8c3ca69a2140dcd48e https://www.encodeproject.org/files/ENCFF112LJI/@@download/ENCFF112LJI.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF176YNV bed narrowPeak optimal idr thresholded peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF574PXY, ENCFF853XFI, ENCFF993IKO 1333405 ENCODE Processing Pipeline 0b315f031f7a61a307a180b6362a29bf https://www.encodeproject.org/files/ENCFF176YNV/@@download/ENCFF176YNV.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF871HHF bigBed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF993IKO 11977525 ENCODE Processing Pipeline 08c383cd3a975685569d470dee1c463f https://www.encodeproject.org/files/ENCFF871HHF/@@download/ENCFF871HHF.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF761KGM bigWig fold change over control ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF550HPW, ENCFF602XLT, ENCFF823CUE 823943531 ENCODE Processing Pipeline acad8f98f493a8cbe5ddf5753dba52ba https://www.encodeproject.org/files/ENCFF761KGM/@@download/ENCFF761KGM.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF031QUD fastq reads ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF794JCH 5206258990 Michael Snyder, Stanford b06e431491e15bc8e1357cae120822bd SRA:SRR6213083 https://www.encodeproject.org/files/ENCFF031QUD/@@download/ENCFF031QUD.fastq.gz Illumina HiSeq 4000 /files/ENCFF319YKD/ released antibody characterized with exemption ENCFF794JCH fastq reads ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF031QUD 5729035983 Michael Snyder, Stanford 5978588057ad2401438b591927584654 SRA:SRR6213083 https://www.encodeproject.org/files/ENCFF794JCH/@@download/ENCFF794JCH.fastq.gz Illumina HiSeq 4000 /files/ENCFF687OGN/ released antibody characterized with exemption ENCFF552RYZ bam unfiltered alignments ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF031QUD, ENCFF794JCH, ENCFF807MUK 10106578309 ENCODE Processing Pipeline 40f918005cb12a1566f26a3522fca276 https://www.encodeproject.org/files/ENCFF552RYZ/@@download/ENCFF552RYZ.bam hg19 released antibody characterized with exemption ENCFF451OJW bam unfiltered alignments ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF031QUD, ENCFF643CGH, ENCFF794JCH 10117140349 ENCODE Processing Pipeline ce499f33e53dc7bec7ee61e1f12e6677 https://www.encodeproject.org/files/ENCFF451OJW/@@download/ENCFF451OJW.bam GRCh38 released antibody characterized with exemption ENCFF260NKL bam alignments ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF031QUD, ENCFF643CGH, ENCFF794JCH 7682451959 ENCODE Processing Pipeline daed02cb159a94bc96aba5b3e117b32c https://www.encodeproject.org/files/ENCFF260NKL/@@download/ENCFF260NKL.bam GRCh38 released antibody characterized with exemption ENCFF847NEY bam alignments ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF031QUD, ENCFF794JCH, ENCFF807MUK 7669043910 ENCODE Processing Pipeline 805d7dc5af36a57724182698770cf3d3 https://www.encodeproject.org/files/ENCFF847NEY/@@download/ENCFF847NEY.bam hg19 released antibody characterized with exemption ENCFF596SLF bigWig signal p-value ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF473HRH, ENCFF847NEY 1632148686 ENCODE Processing Pipeline 763e86fcdc39b0402f8143001fc81073 https://www.encodeproject.org/files/ENCFF596SLF/@@download/ENCFF596SLF.bigWig hg19 released antibody characterized with exemption ENCFF730BBV bigBed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF571KJQ 13967323 ENCODE Processing Pipeline 62c89dfa0e8ac56fde725e737a6aabbf https://www.encodeproject.org/files/ENCFF730BBV/@@download/ENCFF730BBV.bigBed hg19 released antibody characterized with exemption ENCFF571KJQ bed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF473HRH, ENCFF847NEY 7148874 ENCODE Processing Pipeline 0b1bee6b8255bda8362d44ac6f64c8f3 https://www.encodeproject.org/files/ENCFF571KJQ/@@download/ENCFF571KJQ.bed.gz hg19 released antibody characterized with exemption ENCFF186ZHF bigWig fold change over control ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF473HRH, ENCFF847NEY 1943592770 ENCODE Processing Pipeline b2925e8b9fcaae3c32fb58524be2fc01 https://www.encodeproject.org/files/ENCFF186ZHF/@@download/ENCFF186ZHF.bigWig hg19 released antibody characterized with exemption ENCFF628TDS bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF571KJQ 769290 ENCODE Processing Pipeline cd58607413b78b9adb9cac4287c16c79 https://www.encodeproject.org/files/ENCFF628TDS/@@download/ENCFF628TDS.bed.gz hg19 released antibody characterized with exemption ENCFF462DJE bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF628TDS 1290468 ENCODE Processing Pipeline 836a23f724accd91afdb10373e6bddcf https://www.encodeproject.org/files/ENCFF462DJE/@@download/ENCFF462DJE.bigBed hg19 released antibody characterized with exemption ENCFF643IBY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF872XQU 1291293 ENCODE Processing Pipeline c51fffd0ea5e0400f2342eed03c946a4 https://www.encodeproject.org/files/ENCFF643IBY/@@download/ENCFF643IBY.bigBed GRCh38 released antibody characterized with exemption ENCFF875ZVM bed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF260NKL, ENCFF831EFP 7139192 ENCODE Processing Pipeline df7c713a0569232587603dbc9a8d7a56 https://www.encodeproject.org/files/ENCFF875ZVM/@@download/ENCFF875ZVM.bed.gz GRCh38 released antibody characterized with exemption ENCFF603HTW bigWig fold change over control ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF260NKL, ENCFF831EFP 1958644969 ENCODE Processing Pipeline 2705c6c797fab116d485f3e2b62f9d1d https://www.encodeproject.org/files/ENCFF603HTW/@@download/ENCFF603HTW.bigWig GRCh38 released antibody characterized with exemption ENCFF083CME bigBed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF875ZVM 13967180 ENCODE Processing Pipeline 1961a32a016df924623982eaf6836372 https://www.encodeproject.org/files/ENCFF083CME/@@download/ENCFF083CME.bigBed GRCh38 released antibody characterized with exemption ENCFF872XQU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF875ZVM 769847 ENCODE Processing Pipeline 96a6addb7f97f575dfb29ed32e9e168f https://www.encodeproject.org/files/ENCFF872XQU/@@download/ENCFF872XQU.bed.gz GRCh38 released antibody characterized with exemption ENCFF283HMN bigWig signal p-value ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF260NKL, ENCFF831EFP 1645185916 ENCODE Processing Pipeline 57b3db136f26073ef393f85169dca372 https://www.encodeproject.org/files/ENCFF283HMN/@@download/ENCFF283HMN.bigWig GRCh38 released antibody characterized with exemption ENCFF000RZF bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RZT 895900809 Vishwanath Iyer, UTA ec57082fd8c8206f6ab158fce21e9a63 https://www.encodeproject.org/files/ENCFF000RZF/@@download/ENCFF000RZF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZG bigWig base overlap signal ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 390001621 Vishwanath Iyer, UTA 95efee2a1802c02bd991bb8fd7deff23 https://www.encodeproject.org/files/ENCFF000RZG/@@download/ENCFF000RZG.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RZH bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RZV 1255610600 Vishwanath Iyer, UTA 2099fab6d38caa9e2572c8a2dd0d2c69 https://www.encodeproject.org/files/ENCFF000RZH/@@download/ENCFF000RZH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZI bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTN 1372382 Vishwanath Iyer, UTA b7bc61a54dbb8b65e281674138d0dd69 https://www.encodeproject.org/files/ENCFF000RZI/@@download/ENCFF000RZI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZK bigWig signal ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2441920873 Vishwanath Iyer, UTA d64fe6c1d7c55ad862dc3988815ec917 https://www.encodeproject.org/files/ENCFF000RZK/@@download/ENCFF000RZK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000RZT fastq reads ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1243285411 Vishwanath Iyer, UTA ffe77bc6be2de28593a7bf90608d209b https://www.encodeproject.org/files/ENCFF000RZT/@@download/ENCFF000RZT.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000RZV fastq reads ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1306602235 Vishwanath Iyer, UTA 17e0fbe3f94e55a76ee889d84341efc4 https://www.encodeproject.org/files/ENCFF000RZV/@@download/ENCFF000RZV.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UTN bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 836993 Vishwanath Iyer, UTA f17bfac31153100ea484b0a73946e194 https://www.encodeproject.org/files/ENCFF001UTN/@@download/ENCFF001UTN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002DBI bed narrowPeak optimal idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 646105 ENCODE Consortium Analysis Working Group 079ff306c505ce89245d669add456154 https://www.encodeproject.org/files/ENCFF002DBI/@@download/ENCFF002DBI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF833IKV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBI 1419225 ENCODE Consortium 5da4b98818ab540ca9a22cf4af4e5333 https://www.encodeproject.org/files/ENCFF833IKV/@@download/ENCFF833IKV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF929ODT bam unfiltered alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZT, ENCFF643CGH 1574471755 ENCODE Processing Pipeline 57bc0bba41271b0752f1a3f7f280f7fb https://www.encodeproject.org/files/ENCFF929ODT/@@download/ENCFF929ODT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF602ZTX bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZT, ENCFF643CGH 582124043 ENCODE Processing Pipeline bf4601f80a8fe117e2f29ca0ce276c13 https://www.encodeproject.org/files/ENCFF602ZTX/@@download/ENCFF602ZTX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF539SCC bam unfiltered alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZV, ENCFF643CGH 1729708184 ENCODE Processing Pipeline 365599ec0b8bff396afc0a6281f98b14 https://www.encodeproject.org/files/ENCFF539SCC/@@download/ENCFF539SCC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF354ONG bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZV, ENCFF643CGH 662059576 ENCODE Processing Pipeline e93fc9a2a099640343c253ec6d46b376 https://www.encodeproject.org/files/ENCFF354ONG/@@download/ENCFF354ONG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF124PFW bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZT, ENCFF807MUK 582368755 ENCODE Processing Pipeline 50e459236834d4693fea5cb5f5da0b8e https://www.encodeproject.org/files/ENCFF124PFW/@@download/ENCFF124PFW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF289NKQ bam unfiltered alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZT, ENCFF807MUK 1571146494 ENCODE Processing Pipeline f18ca131f99f60d0d7be1c081c5b7d0b https://www.encodeproject.org/files/ENCFF289NKQ/@@download/ENCFF289NKQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF204EXB bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZV, ENCFF807MUK 662486371 ENCODE Processing Pipeline 21d9b4fc3caa0fd74f2588ddf8a8d675 https://www.encodeproject.org/files/ENCFF204EXB/@@download/ENCFF204EXB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF801ISK bam unfiltered alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZV, ENCFF807MUK 1723743574 ENCODE Processing Pipeline b93f8d89a79125ea387414e28cb5db03 https://www.encodeproject.org/files/ENCFF801ISK/@@download/ENCFF801ISK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF318UCM bigWig signal p-value ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602ZTX, ENCFF946WAV 378918217 ENCODE Processing Pipeline 0c1a68f472dc90931271f85644a7e1f6 https://www.encodeproject.org/files/ENCFF318UCM/@@download/ENCFF318UCM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF940XHV bigWig signal p-value ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF354ONG, ENCFF946WAV 475478778 ENCODE Processing Pipeline d31286f20c76f0a4e70444a477820a3a https://www.encodeproject.org/files/ENCFF940XHV/@@download/ENCFF940XHV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF257FWL bigWig signal p-value ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF354ONG, ENCFF602ZTX, ENCFF946WAV 515063534 ENCODE Processing Pipeline efa456e15c188b0474dcfb0c16090dfd https://www.encodeproject.org/files/ENCFF257FWL/@@download/ENCFF257FWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF965HFM bigWig fold change over control ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602ZTX, ENCFF946WAV 307524538 ENCODE Processing Pipeline 4c18645234a053c6c28fbbad28955674 https://www.encodeproject.org/files/ENCFF965HFM/@@download/ENCFF965HFM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF269JPF bigWig fold change over control ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF354ONG, ENCFF946WAV 367658195 ENCODE Processing Pipeline d49d1f8e880e42712123e76f5cf45b98 https://www.encodeproject.org/files/ENCFF269JPF/@@download/ENCFF269JPF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF298WLL bigWig fold change over control ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF354ONG, ENCFF602ZTX, ENCFF946WAV 561301205 ENCODE Processing Pipeline 58d2b964509ed9efa4a72afa990eef1e https://www.encodeproject.org/files/ENCFF298WLL/@@download/ENCFF298WLL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF164SFN bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF354ONG, ENCFF602ZTX, ENCFF946WAV 6506038 ENCODE Processing Pipeline 22ca99276338afb9e8f9a241bcc60fcc https://www.encodeproject.org/files/ENCFF164SFN/@@download/ENCFF164SFN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF565OXQ bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF354ONG, ENCFF946WAV 5567041 ENCODE Processing Pipeline 76e0abc0b4f69320bf1e5bf898e454de https://www.encodeproject.org/files/ENCFF565OXQ/@@download/ENCFF565OXQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF959COX bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602ZTX, ENCFF946WAV 5554615 ENCODE Processing Pipeline 5db2805b4b89bc27c78588ffb1d31bea https://www.encodeproject.org/files/ENCFF959COX/@@download/ENCFF959COX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF671TLX bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF959COX 13111526 ENCODE Processing Pipeline 1d615adc39aa297d547269b686c258e3 https://www.encodeproject.org/files/ENCFF671TLX/@@download/ENCFF671TLX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF661MFB bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF164SFN 13317435 ENCODE Processing Pipeline 3557c643434139e8a99572476af6851c https://www.encodeproject.org/files/ENCFF661MFB/@@download/ENCFF661MFB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF839MIV bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF565OXQ 13199696 ENCODE Processing Pipeline d7f6e97d8d9642c304586fcc26d4333c https://www.encodeproject.org/files/ENCFF839MIV/@@download/ENCFF839MIV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF370EQJ bed narrowPeak optimal idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF164SFN, ENCFF419RSJ, ENCFF565OXQ, ENCFF959COX 570626 ENCODE Processing Pipeline ed384ae090bff7fe3b6d12dce542b8b2 https://www.encodeproject.org/files/ENCFF370EQJ/@@download/ENCFF370EQJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF336QMO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF370EQJ 1144572 ENCODE Processing Pipeline 0e71fe16b68a72a4b6034c12633cd9a6 https://www.encodeproject.org/files/ENCFF336QMO/@@download/ENCFF336QMO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF130MLE bed narrowPeak conservative idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF164SFN, ENCFF419RSJ, ENCFF565OXQ, ENCFF959COX 554485 ENCODE Processing Pipeline bb511a990b4f481dc855ecbe320ef80e https://www.encodeproject.org/files/ENCFF130MLE/@@download/ENCFF130MLE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF815BMP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF130MLE 1116187 ENCODE Processing Pipeline 2494803ad794a633f08f105eb2e2fb81 https://www.encodeproject.org/files/ENCFF815BMP/@@download/ENCFF815BMP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF370ZQB bigWig signal p-value ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF124PFW, ENCFF602XLT 415708166 ENCODE Processing Pipeline 1392624b0f7bf4fa31bba626bdef1121 https://www.encodeproject.org/files/ENCFF370ZQB/@@download/ENCFF370ZQB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF453AYN bigWig signal p-value ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF124PFW, ENCFF204EXB, ENCFF602XLT 513276650 ENCODE Processing Pipeline 0c5505dbc578f6d98efd992e1e721bf9 https://www.encodeproject.org/files/ENCFF453AYN/@@download/ENCFF453AYN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF153LKX bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF124PFW, ENCFF602XLT 5556239 ENCODE Processing Pipeline 30524c665b93a993af908e1be828450c https://www.encodeproject.org/files/ENCFF153LKX/@@download/ENCFF153LKX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF751PWI bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF819JEC 13196307 ENCODE Processing Pipeline f2eca1f32ca9f0834a6176b1ee043405 https://www.encodeproject.org/files/ENCFF751PWI/@@download/ENCFF751PWI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF641ASY bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF787DCF 13317575 ENCODE Processing Pipeline 05f3edf0db2ea8b49fb6fc1eece65487 https://www.encodeproject.org/files/ENCFF641ASY/@@download/ENCFF641ASY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF865DKL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF784MAU 1117960 ENCODE Processing Pipeline 3c517f48267c403025a3febe54e13726 https://www.encodeproject.org/files/ENCFF865DKL/@@download/ENCFF865DKL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF632AVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF695IQU 1139247 ENCODE Processing Pipeline dcf30237b637985854b97a613f5287e1 https://www.encodeproject.org/files/ENCFF632AVS/@@download/ENCFF632AVS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF813IUU bigWig fold change over control ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF124PFW, ENCFF602XLT 306690630 ENCODE Processing Pipeline 4a045ad2ae9dad0e20470d4193b2d885 https://www.encodeproject.org/files/ENCFF813IUU/@@download/ENCFF813IUU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF784MAU bed narrowPeak conservative idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF153LKX, ENCFF787DCF, ENCFF819JEC 557332 ENCODE Processing Pipeline 2a27ff05279b0e78911e12b822082709 https://www.encodeproject.org/files/ENCFF784MAU/@@download/ENCFF784MAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF963BZN bigWig signal p-value ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF204EXB, ENCFF602XLT 439887353 ENCODE Processing Pipeline 8f3379c12d89e9e65e217d98e3a04807 https://www.encodeproject.org/files/ENCFF963BZN/@@download/ENCFF963BZN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF639AYF bigBed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF153LKX 13107667 ENCODE Processing Pipeline dbda7bb6b4c99025dea626dac53452db https://www.encodeproject.org/files/ENCFF639AYF/@@download/ENCFF639AYF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF695IQU bed narrowPeak optimal idr thresholded peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF153LKX, ENCFF787DCF, ENCFF819JEC 568613 ENCODE Processing Pipeline f9b5662aa7654ed4987bf58839091041 https://www.encodeproject.org/files/ENCFF695IQU/@@download/ENCFF695IQU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF612INW bigWig fold change over control ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF204EXB, ENCFF602XLT 370872238 ENCODE Processing Pipeline fc12df0cdfa2335dfa237b3d02bc72f9 https://www.encodeproject.org/files/ENCFF612INW/@@download/ENCFF612INW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF471DUF bigWig fold change over control ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF124PFW, ENCFF204EXB, ENCFF602XLT 555904827 ENCODE Processing Pipeline def188d8e0bd77d6e437890d048e8a02 https://www.encodeproject.org/files/ENCFF471DUF/@@download/ENCFF471DUF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF819JEC bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF204EXB, ENCFF602XLT 5566502 ENCODE Processing Pipeline fef965020e11f9ac397f74fdbfbaa7c1 https://www.encodeproject.org/files/ENCFF819JEC/@@download/ENCFF819JEC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF787DCF bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF124PFW, ENCFF204EXB, ENCFF602XLT 6536387 ENCODE Processing Pipeline 4257d10a6eeb38e1c746527c5439e70b https://www.encodeproject.org/files/ENCFF787DCF/@@download/ENCFF787DCF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000YTL bam alignments ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YTY 272408741 Sherman Weissman, Yale 84b2551b5afc83e52c79f10906bbb48a https://www.encodeproject.org/files/ENCFF000YTL/@@download/ENCFF000YTL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YTM bam alignments ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YTX 199666019 Sherman Weissman, Yale 09167fd890f54da236675706d565c07d https://www.encodeproject.org/files/ENCFF000YTM/@@download/ENCFF000YTM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YTN bigBed narrowPeak peaks ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNT 154000 Sherman Weissman, Yale 055a639182ecf34b3a9281a9776a3828 https://www.encodeproject.org/files/ENCFF000YTN/@@download/ENCFF000YTN.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000YTO bigWig signal ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 303426251 Sherman Weissman, Yale e6a3199b5c46f495b80f940aeab9fdb5 https://www.encodeproject.org/files/ENCFF000YTO/@@download/ENCFF000YTO.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000YTX fastq reads ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 151271889 Sherman Weissman, Yale 20d1a9f2cd0ffb6ec3e270a8ea01a1c2 https://www.encodeproject.org/files/ENCFF000YTX/@@download/ENCFF000YTX.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000YTY fastq reads ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 208419994 Sherman Weissman, Yale bde2fe8c862e7083744b70ac85d4937d https://www.encodeproject.org/files/ENCFF000YTY/@@download/ENCFF000YTY.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VNT bed narrowPeak peaks ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 45577 Sherman Weissman, Yale a19aaf8abd95dbbb946feef40beb6e21 https://www.encodeproject.org/files/ENCFF001VNT/@@download/ENCFF001VNT.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RNE bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RNQ 552880152 Vishwanath Iyer, UTA 7911b09080f688105056bf22c0dcf1b3 https://www.encodeproject.org/files/ENCFF000RNE/@@download/ENCFF000RNE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000RNF bigWig base overlap signal ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1131933167 Vishwanath Iyer, UTA d39e100ae543ad90c4d0092a6c0436f9 https://www.encodeproject.org/files/ENCFF000RNF/@@download/ENCFF000RNF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000RNG bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RNL 761468572 Vishwanath Iyer, UTA e2f98f53ef44d375a9a5fd4c5e6e9512 https://www.encodeproject.org/files/ENCFF000RNG/@@download/ENCFF000RNG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000RNH bigBed narrowPeak peaks ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USD 1842276 Vishwanath Iyer, UTA 5a5630e2c9e130596a04611ee13e2316 https://www.encodeproject.org/files/ENCFF000RNH/@@download/ENCFF000RNH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000RNK bigWig signal ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2785810703 Vishwanath Iyer, UTA dea5a9191b4693da6421a0c35fbca3b0 https://www.encodeproject.org/files/ENCFF000RNK/@@download/ENCFF000RNK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000RNL fastq reads ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 977881436 Vishwanath Iyer, UTA 11a3ad89c2effc4ea915a3f996c4eec0 https://www.encodeproject.org/files/ENCFF000RNL/@@download/ENCFF000RNL.fastq.gz Illumina Genome Analyzer /files/ENCFF000RNI/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000RNQ fastq reads ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 887436913 Vishwanath Iyer, UTA e828cc6ce8470b3c74c3d9a3a9fe7b4e https://www.encodeproject.org/files/ENCFF000RNQ/@@download/ENCFF000RNQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000RNI/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF001USD bed narrowPeak peaks ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1200156 Vishwanath Iyer, UTA 97a044a6db51ad201006ae8fa72c21f6 https://www.encodeproject.org/files/ENCFF001USD/@@download/ENCFF001USD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002DAH bed narrowPeak optimal idr thresholded peaks ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 343743 ENCODE Consortium Analysis Working Group 6ebb6642e457e87e099582be0da6bfa1 https://www.encodeproject.org/files/ENCFF002DAH/@@download/ENCFF002DAH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF096UUH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAH 931574 ENCODE Consortium b51dec18201a956f1f57ba0ef11b3f91 https://www.encodeproject.org/files/ENCFF096UUH/@@download/ENCFF096UUH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF617RAO bam unfiltered alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RNQ, ENCFF643CGH 1062045703 ENCODE Processing Pipeline 513d2e5532935f6648b05ae2c323b512 https://www.encodeproject.org/files/ENCFF617RAO/@@download/ENCFF617RAO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF628TOL bam unfiltered alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNL, ENCFF643CGH 1255359613 ENCODE Processing Pipeline b3229aec097ce8b0eda2e8ffbe6c705a https://www.encodeproject.org/files/ENCFF628TOL/@@download/ENCFF628TOL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF391UAJ bam unfiltered alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNL, ENCFF807MUK 1252535488 ENCODE Processing Pipeline bb5b256dc3644ef8bbf5cab8d201562c https://www.encodeproject.org/files/ENCFF391UAJ/@@download/ENCFF391UAJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF863OQV bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RNQ, ENCFF643CGH 407329144 ENCODE Processing Pipeline 168ae0733ca16365b54a4ac15cc06939 https://www.encodeproject.org/files/ENCFF863OQV/@@download/ENCFF863OQV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF235WMM bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RNQ, ENCFF807MUK 413515154 ENCODE Processing Pipeline 04e46e8a4c55a0b6f63a56e590d63f76 https://www.encodeproject.org/files/ENCFF235WMM/@@download/ENCFF235WMM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF894ODV bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNL, ENCFF643CGH 573600985 ENCODE Processing Pipeline 3f85cc0a2e79089a5a13cf750fdca614 https://www.encodeproject.org/files/ENCFF894ODV/@@download/ENCFF894ODV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF660SAH bam unfiltered alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RNQ, ENCFF807MUK 1068200904 ENCODE Processing Pipeline c1e5318e84d5ab236a4b120f33813b9c https://www.encodeproject.org/files/ENCFF660SAH/@@download/ENCFF660SAH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF481BDP bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNL, ENCFF807MUK 574026775 ENCODE Processing Pipeline bdd49461a4bd292844e83fae0b9a25c5 https://www.encodeproject.org/files/ENCFF481BDP/@@download/ENCFF481BDP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000XIS bam alignments ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XIV 346477077 Kevin Struhl, HMS 6877d45bbe6d4f6f6db8b9fce37d01b6 https://www.encodeproject.org/files/ENCFF000XIS/@@download/ENCFF000XIS.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIT bam alignments ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XIX 315518323 Kevin Struhl, HMS 3713fc38e685b7f53bb32a79b266bf0c https://www.encodeproject.org/files/ENCFF000XIT/@@download/ENCFF000XIT.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIU bigBed narrowPeak peaks ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIX 589988 Kevin Struhl, HMS 0c940f07dfe03fcb096b6a6776076c76 https://www.encodeproject.org/files/ENCFF000XIU/@@download/ENCFF000XIU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XIV fastq reads ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 665901318 Kevin Struhl, HMS b99b03912fcd5110fc48fa725fdee988 https://www.encodeproject.org/files/ENCFF000XIV/@@download/ENCFF000XIV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XIX fastq reads ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 648393532 Kevin Struhl, HMS 9b6f6daf999d8413ca3b92b3f09cd95c https://www.encodeproject.org/files/ENCFF000XIX/@@download/ENCFF000XIX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XIZ bigWig signal ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 267228768 Kevin Struhl, HMS ca9c267c9c128e7e5a1002467198f3bb https://www.encodeproject.org/files/ENCFF000XIZ/@@download/ENCFF000XIZ.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001VIX bed narrowPeak peaks ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 271929 Kevin Struhl, HMS 12edffc71fcd35fbb367b9b3675ee4ca https://www.encodeproject.org/files/ENCFF001VIX/@@download/ENCFF001VIX.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CSV bed narrowPeak optimal idr thresholded peaks ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 176124 ENCODE Consortium Analysis Working Group 25d644731439a2bfeab2c0fd6d75a7ff https://www.encodeproject.org/files/ENCFF002CSV/@@download/ENCFF002CSV.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF655NZJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSV 454902 ENCODE Consortium 2e80c75187e4611748df9705b2ec8d6d https://www.encodeproject.org/files/ENCFF655NZJ/@@download/ENCFF655NZJ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000NBC bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NBL 951568879 Richard Myers, HAIB 9169c1450c127c2ca64c2821808d73ba https://www.encodeproject.org/files/ENCFF000NBC/@@download/ENCFF000NBC.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBD bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NBR 731660025 Richard Myers, HAIB 4f350dff865c2c52fa1d01ccf92aeb0d https://www.encodeproject.org/files/ENCFF000NBD/@@download/ENCFF000NBD.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBE bigBed broadPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TSN 92964 Richard Myers, HAIB 2391a978215f9260fa0cf7baf3a767bf https://www.encodeproject.org/files/ENCFF000NBE/@@download/ENCFF000NBE.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBF bigBed broadPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TSO 62602 Richard Myers, HAIB 633845576f98e27a8080f919eb75c331 https://www.encodeproject.org/files/ENCFF000NBF/@@download/ENCFF000NBF.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBI bigWig raw signal ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 14093530 Richard Myers, HAIB 73755a10c3dfc61d3788ab8ef6b6a67b https://www.encodeproject.org/files/ENCFF000NBI/@@download/ENCFF000NBI.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000NBJ bigWig raw signal ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 9742074 Richard Myers, HAIB 629fdfe8f1c10ce1c6d9a337aa380449 https://www.encodeproject.org/files/ENCFF000NBJ/@@download/ENCFF000NBJ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000NBL fastq reads ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 987699041 Richard Myers, HAIB b44fa20b452f4af8326bf7671850c14b https://www.encodeproject.org/files/ENCFF000NBL/@@download/ENCFF000NBL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NCL/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBR fastq reads ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 754341186 Richard Myers, HAIB 14bdacdeb8fc867e19a5b548cec237ff https://www.encodeproject.org/files/ENCFF000NBR/@@download/ENCFF000NBR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NCO/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001TSN bed broadPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 22642 Richard Myers, HAIB 2ba1bb5ab30d9e3fb4f423f75727221f https://www.encodeproject.org/files/ENCFF001TSN/@@download/ENCFF001TSN.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001TSO bed broadPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 10863 Richard Myers, HAIB 197c1656cacc7f2cdccfa462a307d55b https://www.encodeproject.org/files/ENCFF001TSO/@@download/ENCFF001TSO.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CFQ bed narrowPeak optimal idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 28679 ENCODE Consortium Analysis Working Group 9e7323952052c92533c6411e299ea90a https://www.encodeproject.org/files/ENCFF002CFQ/@@download/ENCFF002CFQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF842IIM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CFQ 156233 ENCODE Consortium f0eb5a470cda3254d72b3f149431de83 https://www.encodeproject.org/files/ENCFF842IIM/@@download/ENCFF842IIM.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF557CPW bam unfiltered alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBR, ENCFF643CGH 990145460 ENCODE Processing Pipeline b5382b81182bcc0257091ea9f275e9d2 https://www.encodeproject.org/files/ENCFF557CPW/@@download/ENCFF557CPW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF577DPU bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBR, ENCFF643CGH 546033690 ENCODE Processing Pipeline 04facd3de8236685c596efc33bbd73cd https://www.encodeproject.org/files/ENCFF577DPU/@@download/ENCFF577DPU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF859DOP bam unfiltered alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBL, ENCFF643CGH 1280594677 ENCODE Processing Pipeline 01ddfdfcec992984d2bf1cc043fb74a5 https://www.encodeproject.org/files/ENCFF859DOP/@@download/ENCFF859DOP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF230UCT bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBL, ENCFF643CGH 732260860 ENCODE Processing Pipeline 830b49318ad6467427b314db51f95f4d https://www.encodeproject.org/files/ENCFF230UCT/@@download/ENCFF230UCT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF397DUC bam unfiltered alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBL, ENCFF807MUK 1275564194 ENCODE Processing Pipeline 33bee09e90d571f3b5976c7f583e74d3 https://www.encodeproject.org/files/ENCFF397DUC/@@download/ENCFF397DUC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF922TWG bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBL, ENCFF807MUK 732453557 ENCODE Processing Pipeline c29b96ee832b6a6c36f9e0796912dcd7 https://www.encodeproject.org/files/ENCFF922TWG/@@download/ENCFF922TWG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF981RAP bam unfiltered alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBR, ENCFF807MUK 986350198 ENCODE Processing Pipeline 765229da05b5e7b0f1422c39ef0046f8 https://www.encodeproject.org/files/ENCFF981RAP/@@download/ENCFF981RAP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF067NBD bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBR, ENCFF807MUK 546286710 ENCODE Processing Pipeline 841dcb653a31e7b29f39746e3cfafc54 https://www.encodeproject.org/files/ENCFF067NBD/@@download/ENCFF067NBD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF612ZSO bigWig signal p-value ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF230UCT, ENCFF440RZX 359623344 ENCODE Processing Pipeline 435e26da2c201e0a761d2445120eb2e1 https://www.encodeproject.org/files/ENCFF612ZSO/@@download/ENCFF612ZSO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF490ALZ bigWig signal p-value ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF577DPU 330819146 ENCODE Processing Pipeline 15316d3d6e688626cb3b6d371e5f27ec https://www.encodeproject.org/files/ENCFF490ALZ/@@download/ENCFF490ALZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF070ZJO bigWig signal p-value ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF230UCT, ENCFF440RZX, ENCFF577DPU 590934224 ENCODE Processing Pipeline 2773e85ddf46a312cd91459b67b00394 https://www.encodeproject.org/files/ENCFF070ZJO/@@download/ENCFF070ZJO.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF993PVS bigWig fold change over control ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF230UCT, ENCFF440RZX 282394773 ENCODE Processing Pipeline 0f5e6705252d7e852929b61f58ec622f https://www.encodeproject.org/files/ENCFF993PVS/@@download/ENCFF993PVS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF895TNQ bigWig fold change over control ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF577DPU 217438638 ENCODE Processing Pipeline 23ae15e22aeb98fe3cad275008fc6786 https://www.encodeproject.org/files/ENCFF895TNQ/@@download/ENCFF895TNQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF330JXX bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF230UCT, ENCFF440RZX 4076330 ENCODE Processing Pipeline 82e35fc41dc9118a6e3213288a188000 https://www.encodeproject.org/files/ENCFF330JXX/@@download/ENCFF330JXX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF834YUX bigWig fold change over control ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF230UCT, ENCFF440RZX, ENCFF577DPU 552542741 ENCODE Processing Pipeline 014d3eff4d025e5a567705f8a10ef2bc https://www.encodeproject.org/files/ENCFF834YUX/@@download/ENCFF834YUX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF990MZM bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF058PCJ, ENCFF230UCT, ENCFF440RZX, ENCFF577DPU 5150502 ENCODE Processing Pipeline d45e206ac65ac87598b1b51da74c19a0 https://www.encodeproject.org/files/ENCFF990MZM/@@download/ENCFF990MZM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976SNX bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF058PCJ, ENCFF577DPU 3892518 ENCODE Processing Pipeline 8417fed496d98750376bc1d3fdd621f2 https://www.encodeproject.org/files/ENCFF976SNX/@@download/ENCFF976SNX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF991ARW bigBed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF330JXX 10342579 ENCODE Processing Pipeline 3889979891524acbfb170943ecd3b145 https://www.encodeproject.org/files/ENCFF991ARW/@@download/ENCFF991ARW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF809XRT bed narrowPeak conservative idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF330JXX, ENCFF419RSJ, ENCFF976SNX, ENCFF990MZM 31335 ENCODE Processing Pipeline 6e60b316a4f5ec1dc5ac86a804d73990 https://www.encodeproject.org/files/ENCFF809XRT/@@download/ENCFF809XRT.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF184VSI bigBed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF976SNX 10005953 ENCODE Processing Pipeline c9c013ddaaa81b8f4b3f5575ad7f5e4d https://www.encodeproject.org/files/ENCFF184VSI/@@download/ENCFF184VSI.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF788XHR bigBed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF990MZM 11265484 ENCODE Processing Pipeline 4efc77e815c394f9c13d7f15c0365d10 https://www.encodeproject.org/files/ENCFF788XHR/@@download/ENCFF788XHR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF306ZCP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809XRT 107322 ENCODE Processing Pipeline 9a4dcd9b3d4c406c98c069334ec9f39e https://www.encodeproject.org/files/ENCFF306ZCP/@@download/ENCFF306ZCP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514IGC bed narrowPeak optimal idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF330JXX, ENCFF419RSJ, ENCFF976SNX, ENCFF990MZM 36845 ENCODE Processing Pipeline 04e23c492f686af0836c251b08648ef7 https://www.encodeproject.org/files/ENCFF514IGC/@@download/ENCFF514IGC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF180AZY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF514IGC 116315 ENCODE Processing Pipeline a9ade4aed4a937ae1ec898ab6992b4bb https://www.encodeproject.org/files/ENCFF180AZY/@@download/ENCFF180AZY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF852EAA bigWig signal p-value ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF922TWG 359536117 ENCODE Processing Pipeline 1a46e910270030af0584b8f53d717c4b https://www.encodeproject.org/files/ENCFF852EAA/@@download/ENCFF852EAA.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF204FJY bigWig signal p-value ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067NBD, ENCFF675VLP 365642780 ENCODE Processing Pipeline e022727f7aa91cb65cd98a371bd4f781 https://www.encodeproject.org/files/ENCFF204FJY/@@download/ENCFF204FJY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF307NYT bigWig fold change over control ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF922TWG 282775512 ENCODE Processing Pipeline c8af7dd926d19deae0b15d0ccc51e775 https://www.encodeproject.org/files/ENCFF307NYT/@@download/ENCFF307NYT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF674YGQ bigWig signal p-value ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067NBD, ENCFF492RDK, ENCFF675VLP, ENCFF922TWG 607619464 ENCODE Processing Pipeline 5d80209c242ad25f15d5bf82c45b902c https://www.encodeproject.org/files/ENCFF674YGQ/@@download/ENCFF674YGQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF695HIL bigWig fold change over control ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067NBD, ENCFF675VLP 215558733 ENCODE Processing Pipeline 4b938096bfb4c92c25dc2225d4a30a89 https://www.encodeproject.org/files/ENCFF695HIL/@@download/ENCFF695HIL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF697XBH bigWig fold change over control ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067NBD, ENCFF492RDK, ENCFF675VLP, ENCFF922TWG 543662869 ENCODE Processing Pipeline 70f93ae3efdeebda6a8b8d2187dc0c7c https://www.encodeproject.org/files/ENCFF697XBH/@@download/ENCFF697XBH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF875UKZ bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF922TWG 4188656 ENCODE Processing Pipeline 7863ba2f2b8289828e96371ed1b5ed25 https://www.encodeproject.org/files/ENCFF875UKZ/@@download/ENCFF875UKZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614GCX bigBed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF660YDK 10099947 ENCODE Processing Pipeline a96a43048d3e6979766880a7106c2a0e https://www.encodeproject.org/files/ENCFF614GCX/@@download/ENCFF614GCX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF277VVP bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF067NBD, ENCFF492RDK, ENCFF675VLP, ENCFF922TWG 5273146 ENCODE Processing Pipeline 3a46f3a62609d450871ee0dad6a2abc9 https://www.encodeproject.org/files/ENCFF277VVP/@@download/ENCFF277VVP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF786ZQT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF841IFL 116028 ENCODE Processing Pipeline 3dbffd0f57a85d8661fa053e66eb5bec https://www.encodeproject.org/files/ENCFF786ZQT/@@download/ENCFF786ZQT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF660YDK bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067NBD, ENCFF675VLP 3940055 ENCODE Processing Pipeline 54bf5195e47bf417a2a71499837ed9fa https://www.encodeproject.org/files/ENCFF660YDK/@@download/ENCFF660YDK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF081YXU bigBed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF875UKZ 10471843 ENCODE Processing Pipeline d12838d9d183c2d3d9540ccde7a8b5cd https://www.encodeproject.org/files/ENCFF081YXU/@@download/ENCFF081YXU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF490HVP bigBed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF277VVP 11259177 ENCODE Processing Pipeline 3908d6081d8d922a64c11cb846aafff2 https://www.encodeproject.org/files/ENCFF490HVP/@@download/ENCFF490HVP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF306VRB bed narrowPeak conservative idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF277VVP, ENCFF660YDK, ENCFF875UKZ 31140 ENCODE Processing Pipeline 70930a4375d3f6948621b0097de61ebd https://www.encodeproject.org/files/ENCFF306VRB/@@download/ENCFF306VRB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF262ZTB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF306VRB 106474 ENCODE Processing Pipeline b97be32811628d34651385bd30beb138 https://www.encodeproject.org/files/ENCFF262ZTB/@@download/ENCFF262ZTB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF841IFL bed narrowPeak optimal idr thresholded peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF277VVP, ENCFF660YDK, ENCFF875UKZ 37448 ENCODE Processing Pipeline 99a7cd47d14f820001e3c8498baebe7d https://www.encodeproject.org/files/ENCFF841IFL/@@download/ENCFF841IFL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OXI bam alignments ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OXO 1153127370 Richard Myers, HAIB 3907880258758f75fb46541a637d4526 https://www.encodeproject.org/files/ENCFF000OXI/@@download/ENCFF000OXI.bam hg19 released biological replicates with identical biosample ENCFF000OXJ bigBed broadPeak peaks ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDI 289257 Richard Myers, HAIB db2b22d20cc45da2c58b50679a9a901e https://www.encodeproject.org/files/ENCFF000OXJ/@@download/ENCFF000OXJ.bigBed hg19 released biological replicates with identical biosample ENCFF000OXK bigBed broadPeak peaks ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDJ 316018 Richard Myers, HAIB e77f220443edf46492e67733b6ac99fc https://www.encodeproject.org/files/ENCFF000OXK/@@download/ENCFF000OXK.bigBed hg19 released biological replicates with identical biosample ENCFF000OXL bam alignments ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OXT 1670430478 Richard Myers, HAIB 4a67ed8ecbde1e87633883830852132d https://www.encodeproject.org/files/ENCFF000OXL/@@download/ENCFF000OXL.bam hg19 released biological replicates with identical biosample ENCFF000OXM bigWig raw signal ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 229354851 Richard Myers, HAIB 8137f61ce1c2fcc098ec4ea3f9b5c622 https://www.encodeproject.org/files/ENCFF000OXM/@@download/ENCFF000OXM.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OXN bigWig raw signal ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 120411046 Richard Myers, HAIB 9dde9cc628c2b4b72f7e172433d4186f https://www.encodeproject.org/files/ENCFF000OXN/@@download/ENCFF000OXN.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000OXO fastq reads ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1176099371 Richard Myers, HAIB 289d0d5cbf6e25c74883a3c40a1d4a80 https://www.encodeproject.org/files/ENCFF000OXO/@@download/ENCFF000OXO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OXQ/ released biological replicates with identical biosample ENCFF000OXT fastq reads ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1693549327 Richard Myers, HAIB 39cf2e682ae909f11e7ecaffd206b173 https://www.encodeproject.org/files/ENCFF000OXT/@@download/ENCFF000OXT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OXP/ released biological replicates with identical biosample ENCFF001UDI bed broadPeak peaks ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 125859 Richard Myers, HAIB f756f5eeede56a3c989b618fe8206711 https://www.encodeproject.org/files/ENCFF001UDI/@@download/ENCFF001UDI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UDJ bed broadPeak peaks ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 156839 Richard Myers, HAIB 44fd1f55931158b34911d28d4e77c746 https://www.encodeproject.org/files/ENCFF001UDJ/@@download/ENCFF001UDJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XNK bam alignments ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XNN 456908124 Michael Snyder, Stanford 29409cf082fd577a85913da0142f7538 https://www.encodeproject.org/files/ENCFF000XNK/@@download/ENCFF000XNK.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNL bam alignments ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XNP 475222486 Michael Snyder, Stanford 7a590cd79d7994a453525c9977da6dd3 https://www.encodeproject.org/files/ENCFF000XNL/@@download/ENCFF000XNL.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNM bigBed narrowPeak peaks ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VJQ 1678868 Michael Snyder, Stanford bf83b0c567d7b2e5e88fd3bd4f5d59ce https://www.encodeproject.org/files/ENCFF000XNM/@@download/ENCFF000XNM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XNN fastq reads ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 869798130 Michael Snyder, Stanford ebdf27196c75ee317bff0e781c31edaa https://www.encodeproject.org/files/ENCFF000XNN/@@download/ENCFF000XNN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XNP fastq reads ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 853429108 Michael Snyder, Stanford ba560c4081c55061351debba43b59405 https://www.encodeproject.org/files/ENCFF000XNP/@@download/ENCFF000XNP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XNR bigWig signal ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 359809898 Michael Snyder, Stanford e54fe0491a930edc44bd877c30282d7c https://www.encodeproject.org/files/ENCFF000XNR/@@download/ENCFF000XNR.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001VJQ bed narrowPeak peaks ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 608513 Michael Snyder, Stanford a62517a561fbc2cd33a08b0bb38b8112 https://www.encodeproject.org/files/ENCFF001VJQ/@@download/ENCFF001VJQ.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CTO bed narrowPeak optimal idr thresholded peaks ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 108760 ENCODE Consortium Analysis Working Group 5599b7953ea928f46244fadce1a07df5 https://www.encodeproject.org/files/ENCFF002CTO/@@download/ENCFF002CTO.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF262HYP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CTO 322786 ENCODE Consortium 09a67a12698ca17d4a767ddb0b166d4f https://www.encodeproject.org/files/ENCFF262HYP/@@download/ENCFF262HYP.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000WJA bam alignments ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WJP 344415291 Michael Snyder, Stanford 6b7cb92f997238922069af6bb17c2e16 https://www.encodeproject.org/files/ENCFF000WJA/@@download/ENCFF000WJA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJD bam alignments ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WJM 255146681 Michael Snyder, Stanford 20c398ae669b534792975376121209b8 https://www.encodeproject.org/files/ENCFF000WJD/@@download/ENCFF000WJD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJE bigBed narrowPeak peaks ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFZ 218412 Michael Snyder, Stanford 20e11f4653614058a18d1311cfaa6e6c https://www.encodeproject.org/files/ENCFF000WJE/@@download/ENCFF000WJE.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJF bam alignments ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WJN 453656200 Michael Snyder, Stanford 0ff762dd81250312bddecbff8df95b07 https://www.encodeproject.org/files/ENCFF000WJF/@@download/ENCFF000WJF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJG bigWig signal ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 418119387 Michael Snyder, Stanford a3d651c9c78e362927aded74438a9f7e https://www.encodeproject.org/files/ENCFF000WJG/@@download/ENCFF000WJG.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WJM fastq reads ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 198892583 Michael Snyder, Stanford 40d36e76c32ac894ec6dd82a2bff6ce1 https://www.encodeproject.org/files/ENCFF000WJM/@@download/ENCFF000WJM.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WJN fastq reads ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 350623372 Michael Snyder, Stanford 87321e8d9e46fc61805bb4099e32b159 https://www.encodeproject.org/files/ENCFF000WJN/@@download/ENCFF000WJN.fastq.gz Illumina Genome Analyzer /files/ENCFF000WJL/ released biological replicates with identical biosample insufficient read length ENCFF000WJP fastq reads ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 263496548 Michael Snyder, Stanford ee8e125ac1d03559c79b40dd468ee32c https://www.encodeproject.org/files/ENCFF000WJP/@@download/ENCFF000WJP.fastq.gz Illumina Genome Analyzer /files/ENCFF000WIZ/ released biological replicates with identical biosample insufficient read length ENCFF001VFZ bed narrowPeak peaks ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 65589 Michael Snyder, Stanford eebf30cb40f074aa1eac4ca3cd35a36b https://www.encodeproject.org/files/ENCFF001VFZ/@@download/ENCFF001VFZ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CQB bed narrowPeak optimal idr thresholded peaks ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 197610 ENCODE Consortium Analysis Working Group a521d8594d1306ceb49e88c81a07b044 https://www.encodeproject.org/files/ENCFF002CQB/@@download/ENCFF002CQB.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF306MUM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQB 501947 ENCODE Consortium 9322b121355209e47cc5ed48c69c4016 https://www.encodeproject.org/files/ENCFF306MUM/@@download/ENCFF306MUM.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000QCD bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QCR 1348401713 Richard Myers, HAIB 274e8e201f61826fd4f23be489d6334e https://www.encodeproject.org/files/ENCFF000QCD/@@download/ENCFF000QCD.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCE bigBed broadPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UKL 690036 Richard Myers, HAIB af2ee5eabf43b702b76d2d2fb4fbf244 https://www.encodeproject.org/files/ENCFF000QCE/@@download/ENCFF000QCE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCF bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QCS 1987058617 Richard Myers, HAIB c028dab7ff95002af578ea525722b9a7 https://www.encodeproject.org/files/ENCFF000QCF/@@download/ENCFF000QCF.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCG bigBed broadPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UKM 742185 Richard Myers, HAIB 64332318bbc1a77d39aea3c1733ca177 https://www.encodeproject.org/files/ENCFF000QCG/@@download/ENCFF000QCG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCJ bigWig raw signal ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 1 41141940 Richard Myers, HAIB 49246d880203d36d460629d23066edd3 https://www.encodeproject.org/files/ENCFF000QCJ/@@download/ENCFF000QCJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000QCK bigWig raw signal ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 1 29971547 Richard Myers, HAIB 71e6e8cfcd19007d5c21552fade5c38f https://www.encodeproject.org/files/ENCFF000QCK/@@download/ENCFF000QCK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000QCR fastq reads ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1330005388 Richard Myers, HAIB 446b1dd05987f96061b3a7c14d1717da https://www.encodeproject.org/files/ENCFF000QCR/@@download/ENCFF000QCR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000QCS fastq reads ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1902729259 Richard Myers, HAIB d557658c1a157b2a3abb6b37c1aa88a5 https://www.encodeproject.org/files/ENCFF000QCS/@@download/ENCFF000QCS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFG/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001UKL bed broadPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 1 434822 Richard Myers, HAIB 5f288bddd95d7f6f8b9e48f34e8674ed https://www.encodeproject.org/files/ENCFF001UKL/@@download/ENCFF001UKL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UKM bed broadPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 1 402146 Richard Myers, HAIB dacd21c37aced1dfec94f5b508976f22 https://www.encodeproject.org/files/ENCFF001UKM/@@download/ENCFF001UKM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CME bed narrowPeak optimal idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 342030 ENCODE Consortium Analysis Working Group 30d95e9beac104673ddddd030762942b https://www.encodeproject.org/files/ENCFF002CME/@@download/ENCFF002CME.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF707HNG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CME 748081 ENCODE Consortium 486c6eddcb74e691f7ffcdf6d96d5b1f https://www.encodeproject.org/files/ENCFF707HNG/@@download/ENCFF707HNG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF546YUW bam unfiltered alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QCR, ENCFF643CGH 1440147058 ENCODE Processing Pipeline 1f264bf4ecf8d10fa2cefc87fe1ae891 https://www.encodeproject.org/files/ENCFF546YUW/@@download/ENCFF546YUW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF568RDF bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QCR, ENCFF643CGH 737582256 ENCODE Processing Pipeline 16d0a4562e47ccb6ab824472397850d3 https://www.encodeproject.org/files/ENCFF568RDF/@@download/ENCFF568RDF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF214TVN bam unfiltered alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QCS, ENCFF643CGH 2128466320 ENCODE Processing Pipeline fabfcfa92132e15829ac0733719a7db0 https://www.encodeproject.org/files/ENCFF214TVN/@@download/ENCFF214TVN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF665EXC bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QCS, ENCFF643CGH 1344635885 ENCODE Processing Pipeline 350873e0388962d6d58faf38176b66ae https://www.encodeproject.org/files/ENCFF665EXC/@@download/ENCFF665EXC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF705VZW bam unfiltered alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QCR, ENCFF807MUK 1438324609 ENCODE Processing Pipeline 58ae754d97d849b13055b965f11260cf https://www.encodeproject.org/files/ENCFF705VZW/@@download/ENCFF705VZW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF422ZRF bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QCR, ENCFF807MUK 737872380 ENCODE Processing Pipeline 864f6fa952e84bc89517f6648ea6ab8b https://www.encodeproject.org/files/ENCFF422ZRF/@@download/ENCFF422ZRF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF911SMC bam unfiltered alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QCS, ENCFF807MUK 2123654715 ENCODE Processing Pipeline 7f70eb81a7433033547ddf08e4f76840 https://www.encodeproject.org/files/ENCFF911SMC/@@download/ENCFF911SMC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF717CDL bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QCS, ENCFF807MUK 1345242329 ENCODE Processing Pipeline fc223de23bd51ac63b15c759a3046544 https://www.encodeproject.org/files/ENCFF717CDL/@@download/ENCFF717CDL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF905NVW bigWig signal p-value ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF665EXC, ENCFF836OEO 626693104 ENCODE Processing Pipeline 2b4d5ec6f318a2ee6fced89b9f9e577a https://www.encodeproject.org/files/ENCFF905NVW/@@download/ENCFF905NVW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF456LKX bigWig signal p-value ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF568RDF, ENCFF836OEO 629918605 ENCODE Processing Pipeline 06700ed1e99d8d754591d10bd332d6d6 https://www.encodeproject.org/files/ENCFF456LKX/@@download/ENCFF456LKX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF945EWN bigWig signal p-value ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF568RDF, ENCFF665EXC, ENCFF836OEO 851956326 ENCODE Processing Pipeline ddaa84bd771bc56a35d9bb1cb7825dc2 https://www.encodeproject.org/files/ENCFF945EWN/@@download/ENCFF945EWN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF545LQM bigWig fold change over control ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF665EXC, ENCFF836OEO 661276138 ENCODE Processing Pipeline d73b7dbb3a3dea22e658b6cec2602a42 https://www.encodeproject.org/files/ENCFF545LQM/@@download/ENCFF545LQM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF720LZR bigWig fold change over control ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF568RDF, ENCFF836OEO 462384121 ENCODE Processing Pipeline 4b88a7e482e144b3e66d2ac9a27e8a72 https://www.encodeproject.org/files/ENCFF720LZR/@@download/ENCFF720LZR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF600YIF bigWig fold change over control ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF568RDF, ENCFF665EXC, ENCFF836OEO 894815134 ENCODE Processing Pipeline e2bc1b6ec9c17dd0bf9d2120ba4c62b6 https://www.encodeproject.org/files/ENCFF600YIF/@@download/ENCFF600YIF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF836ATN bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF665EXC, ENCFF836OEO 6196481 ENCODE Processing Pipeline cf5ad2caed13eecb0451f34aa62b80f1 https://www.encodeproject.org/files/ENCFF836ATN/@@download/ENCFF836ATN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF933HXQ bigBed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF836ATN 13134261 ENCODE Processing Pipeline b2e7e5a199b7bf6e36d2012673a60241 https://www.encodeproject.org/files/ENCFF933HXQ/@@download/ENCFF933HXQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF747XLZ bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF568RDF, ENCFF836OEO 6630979 ENCODE Processing Pipeline ee1d7f7b2940d61745d4c49f19426578 https://www.encodeproject.org/files/ENCFF747XLZ/@@download/ENCFF747XLZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF796IXS bigBed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF747XLZ 12496775 ENCODE Processing Pipeline 599406d1c0e2983ff77385a7921a2682 https://www.encodeproject.org/files/ENCFF796IXS/@@download/ENCFF796IXS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF567VBY bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF568RDF, ENCFF665EXC, ENCFF836OEO 6906555 ENCODE Processing Pipeline ce4d8a7d74914fb9f611be77bb32e571 https://www.encodeproject.org/files/ENCFF567VBY/@@download/ENCFF567VBY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF927ZUH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF056DZM 543972 ENCODE Processing Pipeline 786ec440ec44ab9d6fe46f3488ab9d84 https://www.encodeproject.org/files/ENCFF927ZUH/@@download/ENCFF927ZUH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF518VFK bigBed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF567VBY 12868576 ENCODE Processing Pipeline a16d2832303095ff5156456b8c90ea14 https://www.encodeproject.org/files/ENCFF518VFK/@@download/ENCFF518VFK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF056DZM bed narrowPeak conservative idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF567VBY, ENCFF747XLZ, ENCFF836ATN 292624 ENCODE Processing Pipeline a04015dacc8ce1a693d658f9fb715acd https://www.encodeproject.org/files/ENCFF056DZM/@@download/ENCFF056DZM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF118HUH bed narrowPeak optimal idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF567VBY, ENCFF747XLZ, ENCFF836ATN 357044 ENCODE Processing Pipeline 1040399115870575346daaba5c6bc46a https://www.encodeproject.org/files/ENCFF118HUH/@@download/ENCFF118HUH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF580CVU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF118HUH 782092 ENCODE Processing Pipeline 37f86405796bb3e3d6d25f895a2530b8 https://www.encodeproject.org/files/ENCFF580CVU/@@download/ENCFF580CVU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF490MZK bigWig signal p-value ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF422ZRF, ENCFF522HDC 554586191 ENCODE Processing Pipeline 247fa3b1ed32ef96e60c6e731a77a9e5 https://www.encodeproject.org/files/ENCFF490MZK/@@download/ENCFF490MZK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF234EFL bigWig fold change over control ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF717CDL 666820326 ENCODE Processing Pipeline ea1f8d274823ecec84e85b0750dff04a https://www.encodeproject.org/files/ENCFF234EFL/@@download/ENCFF234EFL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF400ALV bigWig fold change over control ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF422ZRF, ENCFF522HDC 463975133 ENCODE Processing Pipeline 944653ee666b1122e1befb30fa2bec0a https://www.encodeproject.org/files/ENCFF400ALV/@@download/ENCFF400ALV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF977EEA bigWig signal p-value ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF717CDL 746805463 ENCODE Processing Pipeline f6f0cb51b5217984b7f37c72ea75ebde https://www.encodeproject.org/files/ENCFF977EEA/@@download/ENCFF977EEA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF571BKM bigWig signal p-value ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF422ZRF, ENCFF522HDC, ENCFF717CDL 848006264 ENCODE Processing Pipeline 5d089cc1502a961d4317275de0e53929 https://www.encodeproject.org/files/ENCFF571BKM/@@download/ENCFF571BKM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF622IDZ bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF717CDL 6199883 ENCODE Processing Pipeline 774fddafb4755bcf348c1ddbf015a7a7 https://www.encodeproject.org/files/ENCFF622IDZ/@@download/ENCFF622IDZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF829WNA bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF422ZRF, ENCFF522HDC, ENCFF717CDL 6908852 ENCODE Processing Pipeline 2db48d90c72ed8698da70add975ce764 https://www.encodeproject.org/files/ENCFF829WNA/@@download/ENCFF829WNA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF383GMZ bigBed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF622IDZ 13133089 ENCODE Processing Pipeline 00e31fa0e324b4d035f095af2ce57157 https://www.encodeproject.org/files/ENCFF383GMZ/@@download/ENCFF383GMZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF804EEH bigBed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF829WNA 12868424 ENCODE Processing Pipeline 2b3cedb01a66abe2cee8fd7a4dcdbb9f https://www.encodeproject.org/files/ENCFF804EEH/@@download/ENCFF804EEH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF335LTU bigWig fold change over control ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF422ZRF, ENCFF522HDC, ENCFF717CDL 889485498 ENCODE Processing Pipeline 1def10ada690b21aad63422e482e70d3 https://www.encodeproject.org/files/ENCFF335LTU/@@download/ENCFF335LTU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF952DON bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF422ZRF, ENCFF522HDC 6654612 ENCODE Processing Pipeline 795e5b41a86fd9c0fb2ecffc0e96b4aa https://www.encodeproject.org/files/ENCFF952DON/@@download/ENCFF952DON.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF642XXO bigBed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF952DON 12522362 ENCODE Processing Pipeline 3d49bacc9c1550cf0276472c73c88552 https://www.encodeproject.org/files/ENCFF642XXO/@@download/ENCFF642XXO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF823SRC bed narrowPeak conservative idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF622IDZ, ENCFF829WNA, ENCFF952DON 292585 ENCODE Processing Pipeline 4293d1c1e72cc95e6d0f0b9e2f4a7be1 https://www.encodeproject.org/files/ENCFF823SRC/@@download/ENCFF823SRC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF613RMS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF823SRC 543700 ENCODE Processing Pipeline 54b59b7f2a25fbf1a24f39cd3bd59635 https://www.encodeproject.org/files/ENCFF613RMS/@@download/ENCFF613RMS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF077OSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF255EOB 787219 ENCODE Processing Pipeline bbef0d15b225747fa462b20cc957007a https://www.encodeproject.org/files/ENCFF077OSF/@@download/ENCFF077OSF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF255EOB bed narrowPeak optimal idr thresholded peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF622IDZ, ENCFF829WNA, ENCFF952DON 359095 ENCODE Processing Pipeline 261091a7cd8dcdf58adf98e3c6d32d2b https://www.encodeproject.org/files/ENCFF255EOB/@@download/ENCFF255EOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000ZSR bigBed narrowPeak peaks ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VRE 1073861 Michael Snyder, Stanford 163a94a6e3316a6000153b0b7a9cecfc https://www.encodeproject.org/files/ENCFF000ZSR/@@download/ENCFF000ZSR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000ZSS fastq reads ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 943030085 Michael Snyder, Stanford 6d703f16edeed9b8b9c3611f0e0acdb3 https://www.encodeproject.org/files/ENCFF000ZSS/@@download/ENCFF000ZSS.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQO/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000ZSU fastq reads ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 875699174 Michael Snyder, Stanford 9f7c63637102b6811505efa70ac9117e https://www.encodeproject.org/files/ENCFF000ZSU/@@download/ENCFF000ZSU.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZQQ/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000ZSV bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 1 532768793 Michael Snyder, Stanford 6135b9076887ffd5e38fea3a7333ed59 https://www.encodeproject.org/files/ENCFF000ZSV/@@download/ENCFF000ZSV.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample, mismatched file status ENCFF000ZSX bigWig signal ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 490259059 Michael Snyder, Stanford e05bb7ebb62161943109c32ee5f11df0 https://www.encodeproject.org/files/ENCFF000ZSX/@@download/ENCFF000ZSX.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample, mismatched file status ENCFF000ZSY bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 1 494839938 Michael Snyder, Stanford 4de191df5d0ffe2ff657e31a932befe1 https://www.encodeproject.org/files/ENCFF000ZSY/@@download/ENCFF000ZSY.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample, mismatched file status ENCFF001VRE bed narrowPeak peaks ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 550437 Michael Snyder, Stanford 2dcbbded544378aa46ad91ddc4503961 https://www.encodeproject.org/files/ENCFF001VRE/@@download/ENCFF001VRE.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample, mismatched file status ENCFF116QFT bam unfiltered alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSU, ENCFF643CGH 999757041 ENCODE Processing Pipeline 8155e12bafe47adc6f810d9007f0a8a6 https://www.encodeproject.org/files/ENCFF116QFT/@@download/ENCFF116QFT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF276BPO bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSU, ENCFF643CGH 675727737 ENCODE Processing Pipeline 39d19912dc15c6475f700aa376a940fb https://www.encodeproject.org/files/ENCFF276BPO/@@download/ENCFF276BPO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF693KEX bam unfiltered alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSS, ENCFF643CGH 1048664841 ENCODE Processing Pipeline a74ce4b8a2d2a3772897681082ec94e0 https://www.encodeproject.org/files/ENCFF693KEX/@@download/ENCFF693KEX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF412VEJ bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSS, ENCFF643CGH 741057676 ENCODE Processing Pipeline 191275eaa6070ce0b13d9f21029be6da https://www.encodeproject.org/files/ENCFF412VEJ/@@download/ENCFF412VEJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF872YKM bam unfiltered alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSU, ENCFF807MUK 994859702 ENCODE Processing Pipeline 70d0007c39b9d5fc864b33b959e1decf https://www.encodeproject.org/files/ENCFF872YKM/@@download/ENCFF872YKM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF832EGX bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSU, ENCFF807MUK 676003422 ENCODE Processing Pipeline 0802802d52b3d7ddd0dffa5bc8e69e09 https://www.encodeproject.org/files/ENCFF832EGX/@@download/ENCFF832EGX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF975VGN bam unfiltered alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSS, ENCFF807MUK 1045244295 ENCODE Processing Pipeline 1531d92315a5ce78a1dfccdc625615c7 https://www.encodeproject.org/files/ENCFF975VGN/@@download/ENCFF975VGN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF708VHO bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSS, ENCFF807MUK 741299011 ENCODE Processing Pipeline 420456a209e8fede66d0cf7c62757e53 https://www.encodeproject.org/files/ENCFF708VHO/@@download/ENCFF708VHO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF001HJM bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJW 592974863 John Stamatoyannopoulos, UW 6aed2ee7faa693d5c5e3c47e150f6aba https://www.encodeproject.org/files/ENCFF001HJM/@@download/ENCFF001HJM.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJN bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HJX 875934513 John Stamatoyannopoulos, UW 289b6f49e4ba2be1897463340ca79438 https://www.encodeproject.org/files/ENCFF001HJN/@@download/ENCFF001HJN.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJO bigBed broadPeak hotspots ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPV 5896573 John Stamatoyannopoulos, UW 0a0022fc432121a4a8c6a8b71fadfe25 https://www.encodeproject.org/files/ENCFF001HJO/@@download/ENCFF001HJO.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJP bigBed broadPeak hotspots ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPW 3374918 John Stamatoyannopoulos, UW 5547b4a5234e3e9861779f287cfc1ccc https://www.encodeproject.org/files/ENCFF001HJP/@@download/ENCFF001HJP.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJQ bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XPX 1886875 John Stamatoyannopoulos, UW 2a20d5d0079a9a1a8f859d1fef25c668 https://www.encodeproject.org/files/ENCFF001HJQ/@@download/ENCFF001HJQ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJR bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XPY 1056114 John Stamatoyannopoulos, UW da8db40be8ae6562e7c33f385ec30077 https://www.encodeproject.org/files/ENCFF001HJR/@@download/ENCFF001HJR.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJS bigWig raw signal ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HJN 133786344 John Stamatoyannopoulos, UW 5f49f0996c0f630d51b2a72348f3e828 https://www.encodeproject.org/files/ENCFF001HJS/@@download/ENCFF001HJS.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJT bigWig raw signal ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJM 143441636 John Stamatoyannopoulos, UW 7dfa5bed6745897eea20836304644bc9 https://www.encodeproject.org/files/ENCFF001HJT/@@download/ENCFF001HJT.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJW fastq reads ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 652976638 John Stamatoyannopoulos, UW 67c818cfaba275b2fd40f69f49f5886d https://www.encodeproject.org/files/ENCFF001HJW/@@download/ENCFF001HJW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HKF/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001HJX fastq reads ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1025800958 John Stamatoyannopoulos, UW 214b817dbabb194042322f4e4abd6b9f https://www.encodeproject.org/files/ENCFF001HJX/@@download/ENCFF001HJX.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HKF/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001XPV bed broadPeak hotspots ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HJN 3592212 John Stamatoyannopoulos, UW 05da7efaba8d7376f3a4ef3a54cc7eb4 https://www.encodeproject.org/files/ENCFF001XPV/@@download/ENCFF001XPV.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001XPW bed broadPeak hotspots ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJM 2342281 John Stamatoyannopoulos, UW 30d90bce21d1582ccff296f52c57583e https://www.encodeproject.org/files/ENCFF001XPW/@@download/ENCFF001XPW.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001XPX bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HJN 1190726 John Stamatoyannopoulos, UW 7f24fb2058862c3a740093c73d2d45a8 https://www.encodeproject.org/files/ENCFF001XPX/@@download/ENCFF001XPX.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF001XPY bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJM 744052 John Stamatoyannopoulos, UW be40ff7b27fab09884f1348c4f84eaa2 https://www.encodeproject.org/files/ENCFF001XPY/@@download/ENCFF001XPY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF002DCP bed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HJM, ENCFF001HJN 1165376 ENCODE Consortium Analysis Working Group 6be1b61f130ab7cd7c7fca31d9c6b187 https://www.encodeproject.org/files/ENCFF002DCP/@@download/ENCFF002DCP.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF098EVZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCP 2381511 ENCODE Consortium 0e12aed8ca2d2488fb61442e8f5aac69 https://www.encodeproject.org/files/ENCFF098EVZ/@@download/ENCFF098EVZ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF573EJQ bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HJW, ENCFF643CGH 516431583 ENCODE Processing Pipeline 7cd2665650b2bb380cb1cc10b6395d85 https://www.encodeproject.org/files/ENCFF573EJQ/@@download/ENCFF573EJQ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF491NHY bam unfiltered alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HJW, ENCFF643CGH 763125258 ENCODE Processing Pipeline 1da06a8b4281ff251fa21bfdb8ef5c46 https://www.encodeproject.org/files/ENCFF491NHY/@@download/ENCFF491NHY.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF241JIQ bam unfiltered alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HJX, ENCFF643CGH 1100497529 ENCODE Processing Pipeline 63ed214a3d148351eead04f977924637 https://www.encodeproject.org/files/ENCFF241JIQ/@@download/ENCFF241JIQ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF828OEW bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HJX, ENCFF643CGH 634407119 ENCODE Processing Pipeline c8aff76411bf652bf56f73155eea8046 https://www.encodeproject.org/files/ENCFF828OEW/@@download/ENCFF828OEW.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF442FIX bam unfiltered alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HJX, ENCFF807MUK 1098447340 ENCODE Processing Pipeline 35400bd4b0784f3ea1f55778e8920445 https://www.encodeproject.org/files/ENCFF442FIX/@@download/ENCFF442FIX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF778CXN bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HJX, ENCFF807MUK 634741633 ENCODE Processing Pipeline ca314c0d650fb0d79444b13c2dfdf103 https://www.encodeproject.org/files/ENCFF778CXN/@@download/ENCFF778CXN.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF305JYT bam unfiltered alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HJW, ENCFF807MUK 760363414 ENCODE Processing Pipeline 92475ff3b61b55b96b7594a51bd037cb https://www.encodeproject.org/files/ENCFF305JYT/@@download/ENCFF305JYT.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF217JIP bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HJW, ENCFF807MUK 516681020 ENCODE Processing Pipeline 647d1813572a6d99c6b67c242e324ced https://www.encodeproject.org/files/ENCFF217JIP/@@download/ENCFF217JIP.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF204VYC bigWig signal p-value ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF092GCH, ENCFF217JIP 354743949 ENCODE Processing Pipeline ecae8acbdb851cf22a58cb16c4538ed9 https://www.encodeproject.org/files/ENCFF204VYC/@@download/ENCFF204VYC.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF754GXA bigWig signal p-value ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF573EJQ, ENCFF828OEW 445505400 ENCODE Processing Pipeline 176f56e2947e6f6accc5465a6647503a https://www.encodeproject.org/files/ENCFF754GXA/@@download/ENCFF754GXA.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF998SZP bigWig signal p-value ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF573EJQ 401905474 ENCODE Processing Pipeline 92ee5b0761183162bf35713fcac2b5ef https://www.encodeproject.org/files/ENCFF998SZP/@@download/ENCFF998SZP.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF562ESI bigWig signal p-value ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF092GCH, ENCFF778CXN 399764089 ENCODE Processing Pipeline e2126f40766b646d1f9e657832df33c3 https://www.encodeproject.org/files/ENCFF562ESI/@@download/ENCFF562ESI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF146OIV bigWig signal p-value ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF828OEW 413751327 ENCODE Processing Pipeline 792e7175f15d78e1cd157b0185173469 https://www.encodeproject.org/files/ENCFF146OIV/@@download/ENCFF146OIV.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF112ZOY bigWig fold change over control ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF092GCH, ENCFF778CXN 254024910 ENCODE Processing Pipeline 2861159fb34a0048990c5b75adf87aeb https://www.encodeproject.org/files/ENCFF112ZOY/@@download/ENCFF112ZOY.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF234VSB bigWig fold change over control ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF092GCH, ENCFF217JIP 246957210 ENCODE Processing Pipeline 8a27d8e0ba55194304f018c8f4f04032 https://www.encodeproject.org/files/ENCFF234VSB/@@download/ENCFF234VSB.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF225MWV bigWig fold change over control ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF092GCH, ENCFF217JIP, ENCFF778CXN 452291916 ENCODE Processing Pipeline cd98b5b7d1c21770e8d2d6ce3bbffc64 https://www.encodeproject.org/files/ENCFF225MWV/@@download/ENCFF225MWV.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF328CBL bigWig signal p-value ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF092GCH, ENCFF217JIP, ENCFF778CXN 445423756 ENCODE Processing Pipeline 3d86cbc4c87b0b51cb73f765fd580573 https://www.encodeproject.org/files/ENCFF328CBL/@@download/ENCFF328CBL.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF269NNO bigWig fold change over control ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF573EJQ 247163407 ENCODE Processing Pipeline 9f04983c41b3e404992e856fb90668b3 https://www.encodeproject.org/files/ENCFF269NNO/@@download/ENCFF269NNO.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF860HYB bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF222LZR 10935019 ENCODE Processing Pipeline f5790171844dd945f266219c836109ef https://www.encodeproject.org/files/ENCFF860HYB/@@download/ENCFF860HYB.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF708JGA bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF163DTZ 11255326 ENCODE Processing Pipeline 2eb81906870eddc7d5f94b08ae5649f5 https://www.encodeproject.org/files/ENCFF708JGA/@@download/ENCFF708JGA.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF313QOW bigWig fold change over control ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF828OEW 254093083 ENCODE Processing Pipeline 218c0fc634ab65d98f80baaf34efd6dd https://www.encodeproject.org/files/ENCFF313QOW/@@download/ENCFF313QOW.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF222LZR bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF092GCH, ENCFF778CXN 4671117 ENCODE Processing Pipeline c0d8191b3470523ba74e80141ecd67e9 https://www.encodeproject.org/files/ENCFF222LZR/@@download/ENCFF222LZR.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF113ITH bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF092GCH, ENCFF217JIP 4043793 ENCODE Processing Pipeline b90920bb9880c5fd648f636fc9d48cdf https://www.encodeproject.org/files/ENCFF113ITH/@@download/ENCFF113ITH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF163DTZ bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF092GCH, ENCFF217JIP, ENCFF778CXN 4868345 ENCODE Processing Pipeline 5783803a1f4cb53cd388d2fcd465ee71 https://www.encodeproject.org/files/ENCFF163DTZ/@@download/ENCFF163DTZ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF065LHJ bed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF113ITH, ENCFF163DTZ, ENCFF222LZR 978732 ENCODE Processing Pipeline 75759957f5c6749d741f15b5790add81 https://www.encodeproject.org/files/ENCFF065LHJ/@@download/ENCFF065LHJ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF445DAX bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF828OEW 4668638 ENCODE Processing Pipeline 103bd673582317c35eaa3aea6eca014c https://www.encodeproject.org/files/ENCFF445DAX/@@download/ENCFF445DAX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF991NCX bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF113ITH 10184060 ENCODE Processing Pipeline 53ee91386292015ce2256589894c6f2c https://www.encodeproject.org/files/ENCFF991NCX/@@download/ENCFF991NCX.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF526FCP bed narrowPeak conservative idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF113ITH, ENCFF163DTZ, ENCFF222LZR 873259 ENCODE Processing Pipeline b42d3b4ac94ff525a75baae34df37685 https://www.encodeproject.org/files/ENCFF526FCP/@@download/ENCFF526FCP.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF349NBF bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF573EJQ, ENCFF828OEW 4843158 ENCODE Processing Pipeline 14de7ab6f5068d5451a1598066fa227c https://www.encodeproject.org/files/ENCFF349NBF/@@download/ENCFF349NBF.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF210HSY bigWig fold change over control ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF573EJQ, ENCFF828OEW 451837794 ENCODE Processing Pipeline 29072cb80318bb76356b9d3ea3c879e3 https://www.encodeproject.org/files/ENCFF210HSY/@@download/ENCFF210HSY.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF520GFQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF526FCP 1498772 ENCODE Processing Pipeline 26e0acb808a4eb2ede2b36e83fc3b528 https://www.encodeproject.org/files/ENCFF520GFQ/@@download/ENCFF520GFQ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF991SLN bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF573EJQ 4053410 ENCODE Processing Pipeline 08efdcc2e620c599aa30fffcadc89d1a https://www.encodeproject.org/files/ENCFF991SLN/@@download/ENCFF991SLN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF278PJQ bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF445DAX 10928770 ENCODE Processing Pipeline e265dbfd9a2449b8cfb2894a984aa5dc https://www.encodeproject.org/files/ENCFF278PJQ/@@download/ENCFF278PJQ.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF337SSU bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF065LHJ 1635932 ENCODE Processing Pipeline f44e1ed400c3278826c27d9f6c20eb80 https://www.encodeproject.org/files/ENCFF337SSU/@@download/ENCFF337SSU.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF933PTI bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF349NBF 11227439 ENCODE Processing Pipeline a6f01bf24b6562c8ad777bc98758145e https://www.encodeproject.org/files/ENCFF933PTI/@@download/ENCFF933PTI.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF772UJO bigBed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF991SLN 10218850 ENCODE Processing Pipeline 2a2c9c6ec50b03a4b4c97b422f5c759e https://www.encodeproject.org/files/ENCFF772UJO/@@download/ENCFF772UJO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF383ZHH bigBed narrowPeak conservative idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF399PNA 1492089 ENCODE Processing Pipeline e3c7d7f7a5ef2c11c8c21ddda0e88c26 https://www.encodeproject.org/files/ENCFF383ZHH/@@download/ENCFF383ZHH.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF293XJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF427RYJ 1625331 ENCODE Processing Pipeline dc9218a873c38fdfc21f2b3890f5e86d https://www.encodeproject.org/files/ENCFF293XJO/@@download/ENCFF293XJO.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF399PNA bed narrowPeak conservative idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF349NBF, ENCFF419RSJ, ENCFF445DAX, ENCFF991SLN 869817 ENCODE Processing Pipeline 9f6cfb1bd8957921c0e90b47e92e701b https://www.encodeproject.org/files/ENCFF399PNA/@@download/ENCFF399PNA.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF427RYJ bed narrowPeak optimal idr thresholded peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF349NBF, ENCFF419RSJ, ENCFF445DAX, ENCFF991SLN 973789 ENCODE Processing Pipeline 7c0c7396c10d7d834583f8cc90cc238e https://www.encodeproject.org/files/ENCFF427RYJ/@@download/ENCFF427RYJ.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF000YSN bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 1 507484140 Michael Snyder, Stanford 561f2f10719aa2f7d7218c381b6fbe33 https://www.encodeproject.org/files/ENCFF000YSN/@@download/ENCFF000YSN.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000YSO bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 1 519390322 Michael Snyder, Stanford de36a1957a0ae6012bfb50fec2bfdf58 https://www.encodeproject.org/files/ENCFF000YSO/@@download/ENCFF000YSO.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YSP bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VNQ 2645051 Michael Snyder, Stanford 43793f9e81a01b24ecc801b7e543ec66 https://www.encodeproject.org/files/ENCFF000YSP/@@download/ENCFF000YSP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSQ fastq reads ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1118378113 Michael Snyder, Stanford 2514d403b65428e724796a890cba24cf https://www.encodeproject.org/files/ENCFF000YSQ/@@download/ENCFF000YSQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSS fastq reads ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 967626039 Michael Snyder, Stanford b1e8606086185e1d0759e0158d008033 https://www.encodeproject.org/files/ENCFF000YSS/@@download/ENCFF000YSS.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YSU bigWig signal ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 397301421 Michael Snyder, Stanford 9989f87e5bf5169069255c0e3a38d92b https://www.encodeproject.org/files/ENCFF000YSU/@@download/ENCFF000YSU.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001VNQ bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1146115 Michael Snyder, Stanford b2475dc323cf53adefd969fd6e10afd0 https://www.encodeproject.org/files/ENCFF001VNQ/@@download/ENCFF001VNQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CXB bed narrowPeak optimal idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 556411 ENCODE Consortium Analysis Working Group 184a4a65c0bd447f90055b014d4e2e95 https://www.encodeproject.org/files/ENCFF002CXB/@@download/ENCFF002CXB.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF761LUX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CXB 1179491 ENCODE Consortium 91ff88a9cbdd5ef070f71dd22b843633 https://www.encodeproject.org/files/ENCFF761LUX/@@download/ENCFF761LUX.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF017RID bam unfiltered alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YSQ, ENCFF643CGH 1274926047 ENCODE Processing Pipeline 6bd5cbcc44f0830190820b86dbe9baea https://www.encodeproject.org/files/ENCFF017RID/@@download/ENCFF017RID.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF589IXE bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YSS, ENCFF643CGH 804073613 ENCODE Processing Pipeline 94e2ee2f0c82e0fb34ee311a66ddd34d https://www.encodeproject.org/files/ENCFF589IXE/@@download/ENCFF589IXE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF269UVL bam unfiltered alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YSS, ENCFF643CGH 1116515325 ENCODE Processing Pipeline 7f74bcb5ab25e6c765d8a283cc6ea509 https://www.encodeproject.org/files/ENCFF269UVL/@@download/ENCFF269UVL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF097GYE bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YSQ, ENCFF643CGH 855390389 ENCODE Processing Pipeline ae09d0023d46a108a029c381ff73c087 https://www.encodeproject.org/files/ENCFF097GYE/@@download/ENCFF097GYE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF146UJY bam unfiltered alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YSQ, ENCFF807MUK 1269303658 ENCODE Processing Pipeline 35e9a9d9c83f4e57bfca6b1ae0df6891 https://www.encodeproject.org/files/ENCFF146UJY/@@download/ENCFF146UJY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF160TSK bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YSQ, ENCFF807MUK 855991866 ENCODE Processing Pipeline 076efcf2edec117fef55d38bf1dd281b https://www.encodeproject.org/files/ENCFF160TSK/@@download/ENCFF160TSK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF558SMW bam unfiltered alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YSS, ENCFF807MUK 1111273237 ENCODE Processing Pipeline d9c804d0854ff3eca2f7bf3467aa7614 https://www.encodeproject.org/files/ENCFF558SMW/@@download/ENCFF558SMW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF749SYJ bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YSS, ENCFF807MUK 804552577 ENCODE Processing Pipeline 75d0fb4b9db8faf5ba10ba2d0b5f230a https://www.encodeproject.org/files/ENCFF749SYJ/@@download/ENCFF749SYJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF138YWW bigWig signal p-value ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF589IXE 466348254 ENCODE Processing Pipeline 115d31a1075020a53b1f68ccd965a27b https://www.encodeproject.org/files/ENCFF138YWW/@@download/ENCFF138YWW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF654DYQ bigWig signal p-value ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF097GYE 456119911 ENCODE Processing Pipeline 848aa10bd9a8c3d09a141d51e53ec9d8 https://www.encodeproject.org/files/ENCFF654DYQ/@@download/ENCFF654DYQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527POU bigWig signal p-value ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF097GYE, ENCFF589IXE 535053133 ENCODE Processing Pipeline e368aa32597ede783027e6a296c08b7f https://www.encodeproject.org/files/ENCFF527POU/@@download/ENCFF527POU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF754JJU bigWig fold change over control ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF097GYE 413791404 ENCODE Processing Pipeline af4fa2e006ce09b69949e6082e27c0c8 https://www.encodeproject.org/files/ENCFF754JJU/@@download/ENCFF754JJU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF281FHT bigWig fold change over control ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF589IXE 415769807 ENCODE Processing Pipeline 27341916ebef904dc6638ce81927b73f https://www.encodeproject.org/files/ENCFF281FHT/@@download/ENCFF281FHT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF291VIM bigWig fold change over control ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF097GYE, ENCFF589IXE 687316365 ENCODE Processing Pipeline 996c72385b5ef1822f2fc2631e767686 https://www.encodeproject.org/files/ENCFF291VIM/@@download/ENCFF291VIM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700ZVY bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF023NGN, ENCFF589IXE 5052256 ENCODE Processing Pipeline 89bdbc2aff23aae9a97dff9663253dcb https://www.encodeproject.org/files/ENCFF700ZVY/@@download/ENCFF700ZVY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF389AAK bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF023NGN, ENCFF097GYE, ENCFF589IXE 3444253 ENCODE Processing Pipeline 8e442cd36eb622dab93c07ab0b8b16d6 https://www.encodeproject.org/files/ENCFF389AAK/@@download/ENCFF389AAK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF283WGH bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF023NGN, ENCFF097GYE 4575718 ENCODE Processing Pipeline 2a5f6935885c2b6e0d3da5174087d484 https://www.encodeproject.org/files/ENCFF283WGH/@@download/ENCFF283WGH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF956THC bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF283WGH 10978539 ENCODE Processing Pipeline 98707231266170cfd3f5876996cefabd https://www.encodeproject.org/files/ENCFF956THC/@@download/ENCFF956THC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF452YZB bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF700ZVY 11229602 ENCODE Processing Pipeline 461f11673e0637eda030952423d1d27b https://www.encodeproject.org/files/ENCFF452YZB/@@download/ENCFF452YZB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF644ESG bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF389AAK 6785496 ENCODE Processing Pipeline 09652e4e5453006aa2a4c882a905d41e https://www.encodeproject.org/files/ENCFF644ESG/@@download/ENCFF644ESG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF003UXM bed narrowPeak conservative idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF283WGH, ENCFF389AAK, ENCFF419RSJ, ENCFF700ZVY 378843 ENCODE Processing Pipeline 74de2195b5e8f82942feadb41018b9d1 https://www.encodeproject.org/files/ENCFF003UXM/@@download/ENCFF003UXM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF923EUY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF003UXM 757277 ENCODE Processing Pipeline 96336335b32a657733393f885a571726 https://www.encodeproject.org/files/ENCFF923EUY/@@download/ENCFF923EUY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498MGH bed narrowPeak optimal idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF283WGH, ENCFF389AAK, ENCFF419RSJ, ENCFF700ZVY 448897 ENCODE Processing Pipeline 46e06647fc96ac749c5a5de3d3cbce49 https://www.encodeproject.org/files/ENCFF498MGH/@@download/ENCFF498MGH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF413VIZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF498MGH 854766 ENCODE Processing Pipeline 65fbde7fdb163d13c05a36f8e4a20cff https://www.encodeproject.org/files/ENCFF413VIZ/@@download/ENCFF413VIZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF632KEX bigWig signal p-value ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF160TSK, ENCFF710NTS, ENCFF749SYJ 535537373 ENCODE Processing Pipeline edfd20fbad28ce313ca2ded8320e4281 https://www.encodeproject.org/files/ENCFF632KEX/@@download/ENCFF632KEX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF483XQO bed narrowPeak conservative idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF583NBG, ENCFF755LJZ, ENCFF864KPF 377733 ENCODE Processing Pipeline 2cca87c89b2620bb38a88037ade4e78d https://www.encodeproject.org/files/ENCFF483XQO/@@download/ENCFF483XQO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF308IXJ bed narrowPeak optimal idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF583NBG, ENCFF755LJZ, ENCFF864KPF 460910 ENCODE Processing Pipeline 681c4962a27c4e34b59fc8490e917288 https://www.encodeproject.org/files/ENCFF308IXJ/@@download/ENCFF308IXJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF261CZF bigWig fold change over control ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF160TSK, ENCFF710NTS 408221290 ENCODE Processing Pipeline 15e574912479660ac5f6a4bde6c772f9 https://www.encodeproject.org/files/ENCFF261CZF/@@download/ENCFF261CZF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF177AET bigWig fold change over control ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF749SYJ 416005531 ENCODE Processing Pipeline bfb5acb24b626c84965372bb8edcc7f8 https://www.encodeproject.org/files/ENCFF177AET/@@download/ENCFF177AET.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF117DXF bigWig signal p-value ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF160TSK, ENCFF710NTS 399551241 ENCODE Processing Pipeline fc1f7cc313f8b009a427f2f2a58fee3e https://www.encodeproject.org/files/ENCFF117DXF/@@download/ENCFF117DXF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF203KGP bigWig signal p-value ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF749SYJ 467458448 ENCODE Processing Pipeline d80887460b4f7627a46513a397ab46f2 https://www.encodeproject.org/files/ENCFF203KGP/@@download/ENCFF203KGP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864KPF bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF160TSK, ENCFF710NTS, ENCFF749SYJ 3454555 ENCODE Processing Pipeline 28a0d206ad9f0c58408176c16513f403 https://www.encodeproject.org/files/ENCFF864KPF/@@download/ENCFF864KPF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF791MGR bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF755LJZ 10972275 ENCODE Processing Pipeline 63e41b0e571029eb7ffe38bd792e4e0b https://www.encodeproject.org/files/ENCFF791MGR/@@download/ENCFF791MGR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF931BLV bigWig fold change over control ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF160TSK, ENCFF710NTS, ENCFF749SYJ 688255276 ENCODE Processing Pipeline 093bfc4453f285c3ff5a4f0bbba99a5e https://www.encodeproject.org/files/ENCFF931BLV/@@download/ENCFF931BLV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF583NBG bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF749SYJ 5054985 ENCODE Processing Pipeline 6aee239046d6bf1e67dc315de774e846 https://www.encodeproject.org/files/ENCFF583NBG/@@download/ENCFF583NBG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF425KOG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF308IXJ 869933 ENCODE Processing Pipeline 19e33a36a8c4b61b5344aef16c0f7246 https://www.encodeproject.org/files/ENCFF425KOG/@@download/ENCFF425KOG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF755LJZ bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF160TSK, ENCFF710NTS 4579891 ENCODE Processing Pipeline 9bed18f9f50fe4fe253a79d9ac223fdd https://www.encodeproject.org/files/ENCFF755LJZ/@@download/ENCFF755LJZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760CHV bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF583NBG 11227965 ENCODE Processing Pipeline ed3d8c757886906c461453891f49f354 https://www.encodeproject.org/files/ENCFF760CHV/@@download/ENCFF760CHV.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF092VSW bigBed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF864KPF 6800895 ENCODE Processing Pipeline 9819dd0b30abc1dcb112ff2d252a22f5 https://www.encodeproject.org/files/ENCFF092VSW/@@download/ENCFF092VSW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF849GPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF483XQO 754316 ENCODE Processing Pipeline 19622b8e87e8637e93a6943c90afd22a https://www.encodeproject.org/files/ENCFF849GPV/@@download/ENCFF849GPV.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HWB bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HWL 820525473 John Stamatoyannopoulos, UW 1e498357a77c3b11d70b87192c0650bf https://www.encodeproject.org/files/ENCFF001HWB/@@download/ENCFF001HWB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWC bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWU 707344488 John Stamatoyannopoulos, UW 1be83e68b1a35a7ff69247a61d140794 https://www.encodeproject.org/files/ENCFF001HWC/@@download/ENCFF001HWC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWD bigBed broadPeak hotspots ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XTL 4932204 John Stamatoyannopoulos, UW 9defdcd4b5c73f1f9a3ea1010b169af6 https://www.encodeproject.org/files/ENCFF001HWD/@@download/ENCFF001HWD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWE bigBed broadPeak hotspots ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XTM 3164979 John Stamatoyannopoulos, UW bf25d5e289cb4f9f8a94ea66f5e15f65 https://www.encodeproject.org/files/ENCFF001HWE/@@download/ENCFF001HWE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWF bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XTN 1562647 John Stamatoyannopoulos, UW 0c598e1d0cac7378e839d96da6449253 https://www.encodeproject.org/files/ENCFF001HWF/@@download/ENCFF001HWF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWG bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XTO 1112989 John Stamatoyannopoulos, UW 47d372a2f76715e5ace9af1953e234bc https://www.encodeproject.org/files/ENCFF001HWG/@@download/ENCFF001HWG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWH bigWig raw signal ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HWB 130533995 John Stamatoyannopoulos, UW f40e7a3d201c043a4a13d8655b7ebc9c https://www.encodeproject.org/files/ENCFF001HWH/@@download/ENCFF001HWH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWI bigWig raw signal ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWC 127416798 John Stamatoyannopoulos, UW 89a25dad04dedfc75307c17ce8245219 https://www.encodeproject.org/files/ENCFF001HWI/@@download/ENCFF001HWI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001HWL fastq reads ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 1024309196 John Stamatoyannopoulos, UW 8fbe0c81b369c3f43c1d3596b006ea08 https://www.encodeproject.org/files/ENCFF001HWL/@@download/ENCFF001HWL.fastq.gz Illumina Genome Analyzer /files/ENCFF001HWY/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001HWU fastq reads ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 846706481 John Stamatoyannopoulos, UW eb2e22565d4857ff96b65b45f6d3bcc5 https://www.encodeproject.org/files/ENCFF001HWU/@@download/ENCFF001HWU.fastq.gz Illumina Genome Analyzer /files/ENCFF001HWY/ released low read length, mild to moderate bottlenecking, low read depth ENCFF001XTL bed broadPeak hotspots ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HWB 2711670 John Stamatoyannopoulos, UW 6f9d58657279ff45dbb92ab56b7b4ee0 https://www.encodeproject.org/files/ENCFF001XTL/@@download/ENCFF001XTL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XTM bed broadPeak hotspots ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWC 2248126 John Stamatoyannopoulos, UW efbe729aaafd6b005d43326cb5ae5df9 https://www.encodeproject.org/files/ENCFF001XTM/@@download/ENCFF001XTM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XTN bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HWB 913323 John Stamatoyannopoulos, UW 01fa7d32e0dfdf68296abaa7bd841c06 https://www.encodeproject.org/files/ENCFF001XTN/@@download/ENCFF001XTN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF001XTO bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWC 777958 John Stamatoyannopoulos, UW 7b0383c6a7fa3159890f4a4d93fa8d93 https://www.encodeproject.org/files/ENCFF001XTO/@@download/ENCFF001XTO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF002DDP bed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HWB, ENCFF001HWC 1158472 ENCODE Consortium Analysis Working Group 523f053e43d5ec00ebc98b367ea08e54 https://www.encodeproject.org/files/ENCFF002DDP/@@download/ENCFF002DDP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF810SXI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DDP 2401491 ENCODE Consortium f025ae5df6ecbecd40fb125ea7915504 https://www.encodeproject.org/files/ENCFF810SXI/@@download/ENCFF810SXI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF537QBS bam unfiltered alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HWU, ENCFF643CGH 935698227 ENCODE Processing Pipeline 8789da49926e765e1b3fa728862f31f0 https://www.encodeproject.org/files/ENCFF537QBS/@@download/ENCFF537QBS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF033MWR bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HWU, ENCFF643CGH 588376100 ENCODE Processing Pipeline 39926f0c4994c800d73dfeb84596c112 https://www.encodeproject.org/files/ENCFF033MWR/@@download/ENCFF033MWR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF454UUJ bam unfiltered alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HWL, ENCFF643CGH 1108938262 ENCODE Processing Pipeline d4b96ff2a4e0d940301d18e70e7f241a https://www.encodeproject.org/files/ENCFF454UUJ/@@download/ENCFF454UUJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF693QLZ bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HWL, ENCFF643CGH 663703835 ENCODE Processing Pipeline 49bbc3fd9602a6517ef0f0ad254cf730 https://www.encodeproject.org/files/ENCFF693QLZ/@@download/ENCFF693QLZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF353GOT bam unfiltered alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HWU, ENCFF807MUK 932980484 ENCODE Processing Pipeline 02df051f60139ea87ac3734d3eb48702 https://www.encodeproject.org/files/ENCFF353GOT/@@download/ENCFF353GOT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF329NOM bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HWU, ENCFF807MUK 588702367 ENCODE Processing Pipeline 2e74c6e29e4f0da542c2d34f5b3e62ad https://www.encodeproject.org/files/ENCFF329NOM/@@download/ENCFF329NOM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF752YSI bam unfiltered alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HWL, ENCFF807MUK 1105596192 ENCODE Processing Pipeline 07f24e7b33566d4e788ccc04bdbce891 https://www.encodeproject.org/files/ENCFF752YSI/@@download/ENCFF752YSI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF296JDR bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HWL, ENCFF807MUK 664074693 ENCODE Processing Pipeline ed9e82daf35000d003c41a03fc28630c https://www.encodeproject.org/files/ENCFF296JDR/@@download/ENCFF296JDR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF444FBN bigWig signal p-value ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF693QLZ, ENCFF870RFE 543994801 ENCODE Processing Pipeline 2deebf1579336dbeaa4acd534bf078d2 https://www.encodeproject.org/files/ENCFF444FBN/@@download/ENCFF444FBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF050PYC bigWig signal p-value ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF033MWR, ENCFF870RFE 423076731 ENCODE Processing Pipeline 731326c9871009c3be0e7cf6b40813a6 https://www.encodeproject.org/files/ENCFF050PYC/@@download/ENCFF050PYC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF139TJG bigWig signal p-value ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF033MWR, ENCFF693QLZ, ENCFF870RFE 610291656 ENCODE Processing Pipeline 0e4e2480d25d01f6583d046788e6f8c8 https://www.encodeproject.org/files/ENCFF139TJG/@@download/ENCFF139TJG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF447VYK bigWig fold change over control ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF033MWR, ENCFF870RFE 322328425 ENCODE Processing Pipeline d12e0e90e41c3faee351c9f93c33d492 https://www.encodeproject.org/files/ENCFF447VYK/@@download/ENCFF447VYK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF984BSZ bigWig fold change over control ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF693QLZ, ENCFF870RFE 326255428 ENCODE Processing Pipeline 4ff70064c6857c6d3d6ea344d9d1ad89 https://www.encodeproject.org/files/ENCFF984BSZ/@@download/ENCFF984BSZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF585EEJ bigWig fold change over control ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF033MWR, ENCFF693QLZ, ENCFF870RFE 554948975 ENCODE Processing Pipeline 9c81eb37576904ed5aab5c54304b7aad https://www.encodeproject.org/files/ENCFF585EEJ/@@download/ENCFF585EEJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF297PJW bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF693QLZ, ENCFF870RFE 4522640 ENCODE Processing Pipeline de5b2e9972c0bcf46a5f2e8a3c93605f https://www.encodeproject.org/files/ENCFF297PJW/@@download/ENCFF297PJW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF932EHP bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF033MWR, ENCFF693QLZ, ENCFF870RFE 5096229 ENCODE Processing Pipeline 95d26b63474a24e86364a24d73f07ff3 https://www.encodeproject.org/files/ENCFF932EHP/@@download/ENCFF932EHP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF805UHD bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF297PJW 11012499 ENCODE Processing Pipeline 4a940923d5036493d54a8119d090cb14 https://www.encodeproject.org/files/ENCFF805UHD/@@download/ENCFF805UHD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF390JNR bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF033MWR, ENCFF870RFE 4636053 ENCODE Processing Pipeline cc45cf97433bdc1624b95d1588103f85 https://www.encodeproject.org/files/ENCFF390JNR/@@download/ENCFF390JNR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF246VGW bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF390JNR 11073852 ENCODE Processing Pipeline b2ce6c1e722dca76fa96008e5d62647f https://www.encodeproject.org/files/ENCFF246VGW/@@download/ENCFF246VGW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF378OAB bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF932EHP 11599854 ENCODE Processing Pipeline 804a0d028e1f0cfdefdce3c138d528f6 https://www.encodeproject.org/files/ENCFF378OAB/@@download/ENCFF378OAB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF192UQS bed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF297PJW, ENCFF390JNR, ENCFF419RSJ, ENCFF932EHP 972573 ENCODE Processing Pipeline 7b7cd51c6b4a31a40abb6c043c950829 https://www.encodeproject.org/files/ENCFF192UQS/@@download/ENCFF192UQS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF238OQI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF192UQS 1630220 ENCODE Processing Pipeline 9dcd7234afe1c9ad37869e0138006652 https://www.encodeproject.org/files/ENCFF238OQI/@@download/ENCFF238OQI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF816ZWQ bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF447AUB 11055298 ENCODE Processing Pipeline 710c0f0d100034c05bd89dcc6201fde0 https://www.encodeproject.org/files/ENCFF816ZWQ/@@download/ENCFF816ZWQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF557DMA bigBed narrowPeak conservative idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF773EJN 1638168 ENCODE Processing Pipeline 563c15d53d1444b9fe75d5db6b6d16b9 https://www.encodeproject.org/files/ENCFF557DMA/@@download/ENCFF557DMA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF247QDD bigWig fold change over control ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF296JDR, ENCFF634UTF 326221561 ENCODE Processing Pipeline 619596c29c825f965a779f8d7217e318 https://www.encodeproject.org/files/ENCFF247QDD/@@download/ENCFF247QDD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF475DEA bigWig signal p-value ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF329NOM, ENCFF634UTF 482045795 ENCODE Processing Pipeline b4cd8ac5b89f2dff297a98d37b1bb109 https://www.encodeproject.org/files/ENCFF475DEA/@@download/ENCFF475DEA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF821MGB bigWig fold change over control ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF296JDR, ENCFF329NOM, ENCFF634UTF 553106258 ENCODE Processing Pipeline c30145b9f3a0d3d971ca76deb83ceb7c https://www.encodeproject.org/files/ENCFF821MGB/@@download/ENCFF821MGB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF447AUB bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF296JDR, ENCFF634UTF 4548581 ENCODE Processing Pipeline d36a83fab519ffb7689f6387ce332a72 https://www.encodeproject.org/files/ENCFF447AUB/@@download/ENCFF447AUB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF786VHM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF470PNM 1650395 ENCODE Processing Pipeline 4040d2ab797220a03a97963d37acb58d https://www.encodeproject.org/files/ENCFF786VHM/@@download/ENCFF786VHM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF558GDA bigWig signal p-value ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF296JDR, ENCFF634UTF 441004314 ENCODE Processing Pipeline 7e5d2ac7e7150e2c93c54dd726e20c93 https://www.encodeproject.org/files/ENCFF558GDA/@@download/ENCFF558GDA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF823UTP bigWig signal p-value ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF296JDR, ENCFF329NOM, ENCFF634UTF 609238797 ENCODE Processing Pipeline fbce45b3d6b4fc45ff56efbf7bfa5ef4 https://www.encodeproject.org/files/ENCFF823UTP/@@download/ENCFF823UTP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF728NGG bigWig fold change over control ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF329NOM, ENCFF634UTF 321715513 ENCODE Processing Pipeline 81c1b351944d47bcf1c38017bff47579 https://www.encodeproject.org/files/ENCFF728NGG/@@download/ENCFF728NGG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF077RDH bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF329NOM, ENCFF634UTF 4649659 ENCODE Processing Pipeline 8234eef88374edfa741369974e674b23 https://www.encodeproject.org/files/ENCFF077RDH/@@download/ENCFF077RDH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF153WPW bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF077RDH 11079367 ENCODE Processing Pipeline 622cb6470b0c3acb78336064b3f01d44 https://www.encodeproject.org/files/ENCFF153WPW/@@download/ENCFF153WPW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF773EJN bed narrowPeak conservative idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF077RDH, ENCFF447AUB, ENCFF943ZQC 975511 ENCODE Processing Pipeline 0e5f8ebdd6777863dd0c44aeb71347ca https://www.encodeproject.org/files/ENCFF773EJN/@@download/ENCFF773EJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF470PNM bed narrowPeak optimal idr thresholded peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF077RDH, ENCFF447AUB, ENCFF943ZQC 985515 ENCODE Processing Pipeline a32833a04672558d1873a39e47f77f68 https://www.encodeproject.org/files/ENCFF470PNM/@@download/ENCFF470PNM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF943ZQC bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF296JDR, ENCFF329NOM, ENCFF634UTF 5126916 ENCODE Processing Pipeline c39f56a469485e30dbe09a187cf1fee3 https://www.encodeproject.org/files/ENCFF943ZQC/@@download/ENCFF943ZQC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF004VTY bigBed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF943ZQC 11630920 ENCODE Processing Pipeline 448c7baed1045971cc9dd0a72b1c22f1 https://www.encodeproject.org/files/ENCFF004VTY/@@download/ENCFF004VTY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF000RYQ bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RZE 1600199098 Vishwanath Iyer, UTA 723b94a95e35c639b76eace975800a24 https://www.encodeproject.org/files/ENCFF000RYQ/@@download/ENCFF000RYQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF000RYR bigWig base overlap signal ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1227775086 Vishwanath Iyer, UTA 554b5819f928aa71538b29439ddc6fca https://www.encodeproject.org/files/ENCFF000RYR/@@download/ENCFF000RYR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from poor library complexity ENCFF000RYS bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RZC 1202096306 Vishwanath Iyer, UTA 21521dd12af92dff7e795725f80cc72d https://www.encodeproject.org/files/ENCFF000RYS/@@download/ENCFF000RYS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF000RYU bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 ENCFF001UTL 2098021 Vishwanath Iyer, UTA 4e9d21af0a7051b1db016d220ae79940 https://www.encodeproject.org/files/ENCFF000RYU/@@download/ENCFF000RYU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF000RYW bigWig signal ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2890007083 Vishwanath Iyer, UTA 9a1b71f2ca22540fe47c89694778c0c2 https://www.encodeproject.org/files/ENCFF000RYW/@@download/ENCFF000RYW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample poor library complexity ENCFF000RZC fastq reads ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 1 36 single-ended 1246578635 Vishwanath Iyer, UTA 9b93e44c177b71705c5c53f850d8e664 https://www.encodeproject.org/files/ENCFF000RZC/@@download/ENCFF000RZC.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF000RZE fastq reads ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 36 single-ended 2047481755 Vishwanath Iyer, UTA a0b6435ccc8d7883fe8a198b7f6e40ca https://www.encodeproject.org/files/ENCFF000RZE/@@download/ENCFF000RZE.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF001UTL bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 1084348 Vishwanath Iyer, UTA ad98c9d0ebbb2d569d21ff92750c60a5 https://www.encodeproject.org/files/ENCFF001UTL/@@download/ENCFF001UTL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from poor library complexity ENCFF002DBG bed narrowPeak optimal idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 493971 ENCODE Consortium Analysis Working Group d958e2990ab4f5d6521c1dd479c8380a https://www.encodeproject.org/files/ENCFF002DBG/@@download/ENCFF002DBG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from poor library complexity ENCFF021WEE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE ENCFF002DBG 1329165 ENCODE Consortium 8ae7169385bcdb34009aa1af1eb426a3 https://www.encodeproject.org/files/ENCFF021WEE/@@download/ENCFF021WEE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF696MVS bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZC, ENCFF643CGH 844546760 ENCODE Processing Pipeline b3efd1a37829374433f051577a13905b https://www.encodeproject.org/files/ENCFF696MVS/@@download/ENCFF696MVS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF504IOK bam unfiltered alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZC, ENCFF643CGH 1631767874 ENCODE Processing Pipeline 77abe18e22160d51aeafd95f6c43ddae https://www.encodeproject.org/files/ENCFF504IOK/@@download/ENCFF504IOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF670PJL bam unfiltered alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZE, ENCFF643CGH 2374256663 ENCODE Processing Pipeline a78269d7f807f30df89ba3c96f465581 https://www.encodeproject.org/files/ENCFF670PJL/@@download/ENCFF670PJL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF254ZSI bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZE, ENCFF643CGH 523374752 ENCODE Processing Pipeline 1132ec96c00a0c748e8e4d9fa649da9d https://www.encodeproject.org/files/ENCFF254ZSI/@@download/ENCFF254ZSI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF110UPZ bam unfiltered alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZC, ENCFF807MUK 1629640903 ENCODE Processing Pipeline a12f185157f6a53595d2308599491e08 https://www.encodeproject.org/files/ENCFF110UPZ/@@download/ENCFF110UPZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF667KAV bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZC, ENCFF807MUK 844853431 ENCODE Processing Pipeline 04a28e8d6644358dae5688d93f00827c https://www.encodeproject.org/files/ENCFF667KAV/@@download/ENCFF667KAV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF806HHS bam unfiltered alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZE, ENCFF807MUK 2372087855 ENCODE Processing Pipeline 73a62699616ba82675921ee5db509f51 https://www.encodeproject.org/files/ENCFF806HHS/@@download/ENCFF806HHS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF503BOT bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZE, ENCFF807MUK 523533883 ENCODE Processing Pipeline 2b7a8c408e6d349a83cfa6c132410e25 https://www.encodeproject.org/files/ENCFF503BOT/@@download/ENCFF503BOT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF376BQW bigWig signal p-value ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF254ZSI, ENCFF946WAV 428907855 ENCODE Processing Pipeline d6f0494fea647384592c6b5dd9fdae75 https://www.encodeproject.org/files/ENCFF376BQW/@@download/ENCFF376BQW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF228UTT bigWig signal p-value ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF696MVS, ENCFF946WAV 438591674 ENCODE Processing Pipeline f250ca83428b0d6014bd8f3c9f6da695 https://www.encodeproject.org/files/ENCFF228UTT/@@download/ENCFF228UTT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF101YVZ bigWig signal p-value ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF254ZSI, ENCFF696MVS, ENCFF946WAV 510354726 ENCODE Processing Pipeline bf8157b8b5a35a0453d6ea4f69b3539b https://www.encodeproject.org/files/ENCFF101YVZ/@@download/ENCFF101YVZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF696LER bigWig fold change over control ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF696MVS, ENCFF946WAV 362565164 ENCODE Processing Pipeline f56685b19c0444aace824b21e5dce225 https://www.encodeproject.org/files/ENCFF696LER/@@download/ENCFF696LER.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF583MKV bigWig fold change over control ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF254ZSI, ENCFF946WAV 226161210 ENCODE Processing Pipeline f3774040454b7c3b1f4a1e5b889a8b03 https://www.encodeproject.org/files/ENCFF583MKV/@@download/ENCFF583MKV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF608JCM bigWig fold change over control ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF254ZSI, ENCFF696MVS, ENCFF946WAV 499217241 ENCODE Processing Pipeline f4be3f3d0dd48ecf4d2e11d6293f7a15 https://www.encodeproject.org/files/ENCFF608JCM/@@download/ENCFF608JCM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF641FUH bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF254ZSI, ENCFF946WAV 5809874 ENCODE Processing Pipeline ab35cc0c7009738d0d5943b71377f868 https://www.encodeproject.org/files/ENCFF641FUH/@@download/ENCFF641FUH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF874WVN bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF696MVS, ENCFF946WAV 6242655 ENCODE Processing Pipeline 956740b9bd739b5b92d2c1cc24af91cb https://www.encodeproject.org/files/ENCFF874WVN/@@download/ENCFF874WVN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF842GBC bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF254ZSI, ENCFF696MVS, ENCFF946WAV 6872969 ENCODE Processing Pipeline 15fdd1e24b2c046af5a4a0c6d3ca8539 https://www.encodeproject.org/files/ENCFF842GBC/@@download/ENCFF842GBC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF958UAX bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF789EME 905325 ENCODE Processing Pipeline 5719826e66a45c8fabc2156d2a6d6c8b https://www.encodeproject.org/files/ENCFF958UAX/@@download/ENCFF958UAX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF415IYR bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF842GBC 12940960 ENCODE Processing Pipeline 09f2f5f29a733326b40334c4e4893645 https://www.encodeproject.org/files/ENCFF415IYR/@@download/ENCFF415IYR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF789EME bed narrowPeak conservative idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF641FUH, ENCFF842GBC, ENCFF874WVN 424039 ENCODE Processing Pipeline 1f94b6d8a8dfcd86de602bf3189362e2 https://www.encodeproject.org/files/ENCFF789EME/@@download/ENCFF789EME.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF608BBQ bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF641FUH 12798485 ENCODE Processing Pipeline 047c91ad630a9fd1d031db0afd03f11f https://www.encodeproject.org/files/ENCFF608BBQ/@@download/ENCFF608BBQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF548ATZ bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF874WVN 12989972 ENCODE Processing Pipeline ebce823f476df421614e5821c82ca532 https://www.encodeproject.org/files/ENCFF548ATZ/@@download/ENCFF548ATZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF658XME bed narrowPeak optimal idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF419RSJ, ENCFF641FUH, ENCFF842GBC, ENCFF874WVN 475191 ENCODE Processing Pipeline 07e68f07307f97f9d5da739e6f61739c https://www.encodeproject.org/files/ENCFF658XME/@@download/ENCFF658XME.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF630BCI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF658XME 986645 ENCODE Processing Pipeline 93c39ff31cd7f595de7baf12226d801b https://www.encodeproject.org/files/ENCFF630BCI/@@download/ENCFF630BCI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF489GDA bigWig signal p-value ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF503BOT, ENCFF602XLT 459550101 ENCODE Processing Pipeline dc21738144af032bd3341cdee60ddfdc https://www.encodeproject.org/files/ENCFF489GDA/@@download/ENCFF489GDA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF929VQL bigWig signal p-value ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF503BOT, ENCFF602XLT, ENCFF667KAV 510495596 ENCODE Processing Pipeline 829f6e3caf2b66363fe18b9fd48275c3 https://www.encodeproject.org/files/ENCFF929VQL/@@download/ENCFF929VQL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF939WPN bigWig fold change over control ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF503BOT, ENCFF602XLT, ENCFF667KAV 491306157 ENCODE Processing Pipeline c9fd3db270ac0a21dabab99e2f33c66b https://www.encodeproject.org/files/ENCFF939WPN/@@download/ENCFF939WPN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF673PRZ bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF503BOT, ENCFF602XLT, ENCFF667KAV 6886684 ENCODE Processing Pipeline 04486416677759074500fff788239474 https://www.encodeproject.org/files/ENCFF673PRZ/@@download/ENCFF673PRZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF974IAR bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF844RNW 12991026 ENCODE Processing Pipeline ebfba343191671a8aaa211b795f723cd https://www.encodeproject.org/files/ENCFF974IAR/@@download/ENCFF974IAR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF751OSS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF682AWN 1006545 ENCODE Processing Pipeline 8a40582124756b7cb5c098dd0087dce2 https://www.encodeproject.org/files/ENCFF751OSS/@@download/ENCFF751OSS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF670RSW bigWig fold change over control ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF503BOT, ENCFF602XLT 224058576 ENCODE Processing Pipeline f88471a5bb522a0af52e05dc811bfe98 https://www.encodeproject.org/files/ENCFF670RSW/@@download/ENCFF670RSW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF564BUG bigWig fold change over control ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF667KAV 360936143 ENCODE Processing Pipeline 448da5fabfec1d243deea612e4a6c556 https://www.encodeproject.org/files/ENCFF564BUG/@@download/ENCFF564BUG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF844RNW bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF667KAV 6244216 ENCODE Processing Pipeline 6a704b18a3bcb0e80d7bd7757e5ef15a https://www.encodeproject.org/files/ENCFF844RNW/@@download/ENCFF844RNW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF691GGW bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF673PRZ 12935134 ENCODE Processing Pipeline e6f1238a1f916d94f4a2159247e6f543 https://www.encodeproject.org/files/ENCFF691GGW/@@download/ENCFF691GGW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF748CHU bigBed narrowPeak conservative idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF085MCZ 908611 ENCODE Processing Pipeline c303f2705e027b612474d19abae6659d https://www.encodeproject.org/files/ENCFF748CHU/@@download/ENCFF748CHU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF865XEF bigWig signal p-value ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF667KAV 466654934 ENCODE Processing Pipeline ea7f65d6cf1cdc39d08b26f75dd12979 https://www.encodeproject.org/files/ENCFF865XEF/@@download/ENCFF865XEF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF434LJJ bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF503BOT, ENCFF602XLT 5811613 ENCODE Processing Pipeline 1382c5b118a1d9af944efe50a9d027df https://www.encodeproject.org/files/ENCFF434LJJ/@@download/ENCFF434LJJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF385KHV bigBed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF434LJJ 12801167 ENCODE Processing Pipeline 5ef8145f974ea174c2ea4b0f1fcd35c2 https://www.encodeproject.org/files/ENCFF385KHV/@@download/ENCFF385KHV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF085MCZ bed narrowPeak conservative idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF434LJJ, ENCFF673PRZ, ENCFF844RNW 426503 ENCODE Processing Pipeline 14e4184b5c7f54fc8d53fb659004cff2 https://www.encodeproject.org/files/ENCFF085MCZ/@@download/ENCFF085MCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF682AWN bed narrowPeak optimal idr thresholded peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1, 2 ENCFF001TDO, ENCFF434LJJ, ENCFF673PRZ, ENCFF844RNW 489114 ENCODE Processing Pipeline 2e5f5e8319184cefc7e36f4668843e09 https://www.encodeproject.org/files/ENCFF682AWN/@@download/ENCFF682AWN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF000WUO bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WUT 377887259 Michael Snyder, Stanford dfc6f50e33fe30b6ee75da70f5d4c9c8 https://www.encodeproject.org/files/ENCFF000WUO/@@download/ENCFF000WUO.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUP bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WUU 489219185 Michael Snyder, Stanford 20f0a94231c947420c114b008aabae07 https://www.encodeproject.org/files/ENCFF000WUP/@@download/ENCFF000WUP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUQ bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHB 3336192 Michael Snyder, Stanford 3dddae43788147cfd72e4e2bea967d3c https://www.encodeproject.org/files/ENCFF000WUQ/@@download/ENCFF000WUQ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUT fastq reads ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 864504362 Michael Snyder, Stanford b8b474c91746595e790ff34c9d1de71e https://www.encodeproject.org/files/ENCFF000WUT/@@download/ENCFF000WUT.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUU fastq reads ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 952047697 Michael Snyder, Stanford df3bf5563a441097e732d1b9fac41b93 https://www.encodeproject.org/files/ENCFF000WUU/@@download/ENCFF000WUU.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000WUV bigWig signal ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 351282556 Michael Snyder, Stanford a02aba3f74342a665b9d744d39d6ac82 https://www.encodeproject.org/files/ENCFF000WUV/@@download/ENCFF000WUV.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VHB bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1540567 Michael Snyder, Stanford e8954e9079a5b7bfe5e05d14fa3db7c1 https://www.encodeproject.org/files/ENCFF001VHB/@@download/ENCFF001VHB.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CRD bed narrowPeak optimal idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1287346 ENCODE Consortium Analysis Working Group 5a44b504fef5e1d30de5d83679e442a0 https://www.encodeproject.org/files/ENCFF002CRD/@@download/ENCFF002CRD.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF618BJP bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRD 2626106 ENCODE Consortium e54794371377ebb4c78234e892ea79ec https://www.encodeproject.org/files/ENCFF618BJP/@@download/ENCFF618BJP.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471VXI bam unfiltered alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUT, ENCFF643CGH 1037850906 ENCODE Processing Pipeline 99662b8d3c970af6ee9386f0023e0a0d https://www.encodeproject.org/files/ENCFF471VXI/@@download/ENCFF471VXI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF664OEO bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUT, ENCFF643CGH 666671843 ENCODE Processing Pipeline 13675d9c01b0c3da8645cd4ec2d0c2da https://www.encodeproject.org/files/ENCFF664OEO/@@download/ENCFF664OEO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF350SMK bam unfiltered alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUU, ENCFF643CGH 1115465935 ENCODE Processing Pipeline 22149dfce5ae8e944a15fc0ac014c97e https://www.encodeproject.org/files/ENCFF350SMK/@@download/ENCFF350SMK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF025KWT bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUU, ENCFF643CGH 752640777 ENCODE Processing Pipeline 4fa16acdb6d7d52b87915b34b8b85744 https://www.encodeproject.org/files/ENCFF025KWT/@@download/ENCFF025KWT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361FUX bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUT, ENCFF807MUK 666941143 ENCODE Processing Pipeline 157ad664d5f0fb2745cc42c9e88873a2 https://www.encodeproject.org/files/ENCFF361FUX/@@download/ENCFF361FUX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548WVD bam unfiltered alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUT, ENCFF807MUK 1033839460 ENCODE Processing Pipeline 20535c42e5275999e42ae620bcab8a8a https://www.encodeproject.org/files/ENCFF548WVD/@@download/ENCFF548WVD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF266TDL bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUU, ENCFF807MUK 752990309 ENCODE Processing Pipeline 14568a9f247b4de43db4bd0a7925f884 https://www.encodeproject.org/files/ENCFF266TDL/@@download/ENCFF266TDL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF764ULE bam unfiltered alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUU, ENCFF807MUK 1111516225 ENCODE Processing Pipeline 600e567a8b14f46e4f9d4e7a7474b1cb https://www.encodeproject.org/files/ENCFF764ULE/@@download/ENCFF764ULE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182WAH bigWig fold change over control ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF025KWT, ENCFF513EWK 429301080 ENCODE Processing Pipeline 6fff57a15b3028d9b9bf755b42fbc201 https://www.encodeproject.org/files/ENCFF182WAH/@@download/ENCFF182WAH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF267HAV bigWig signal p-value ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF664OEO 600427886 ENCODE Processing Pipeline a227927931fe0d72ef19f2322e020091 https://www.encodeproject.org/files/ENCFF267HAV/@@download/ENCFF267HAV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF696YEV bigWig signal p-value ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF025KWT, ENCFF513EWK 511417512 ENCODE Processing Pipeline 8cc020b67794af2af03f1a255ffc6d7e https://www.encodeproject.org/files/ENCFF696YEV/@@download/ENCFF696YEV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF367OSF bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF954JZQ 11230050 ENCODE Processing Pipeline 521ab2f220b955ba926e1aafa36b1ec2 https://www.encodeproject.org/files/ENCFF367OSF/@@download/ENCFF367OSF.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF636BIP bigWig signal p-value ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF025KWT, ENCFF513EWK, ENCFF664OEO 726035431 ENCODE Processing Pipeline d508757eab258464a44d1081ec11ea90 https://www.encodeproject.org/files/ENCFF636BIP/@@download/ENCFF636BIP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF130VDU bigWig fold change over control ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF664OEO 363309289 ENCODE Processing Pipeline d00381dfe06ab736790a8380b1039242 https://www.encodeproject.org/files/ENCFF130VDU/@@download/ENCFF130VDU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF913JGA bigWig fold change over control ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF025KWT, ENCFF513EWK, ENCFF664OEO 671024292 ENCODE Processing Pipeline b95e1d8a0110c9d312827b4655e6377a https://www.encodeproject.org/files/ENCFF913JGA/@@download/ENCFF913JGA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF251YPB bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF025KWT, ENCFF513EWK 5250078 ENCODE Processing Pipeline 66943ff54ede2cab104d3c4abc21922b https://www.encodeproject.org/files/ENCFF251YPB/@@download/ENCFF251YPB.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803XWR bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF251YPB 11718286 ENCODE Processing Pipeline 6b3c7c286f5a94fb9f6479d223faa3cc https://www.encodeproject.org/files/ENCFF803XWR/@@download/ENCFF803XWR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF954JZQ bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF513EWK, ENCFF664OEO 4700762 ENCODE Processing Pipeline a76dfc7732924aa62f92410994b53918 https://www.encodeproject.org/files/ENCFF954JZQ/@@download/ENCFF954JZQ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998MYK bed narrowPeak conservative idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023YOW, ENCFF251YPB, ENCFF419RSJ, ENCFF954JZQ 969037 ENCODE Processing Pipeline 8565616e2d414355cff6c93d3a8ccf19 https://www.encodeproject.org/files/ENCFF998MYK/@@download/ENCFF998MYK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF023YOW bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF025KWT, ENCFF513EWK, ENCFF664OEO 5723665 ENCODE Processing Pipeline cb41a03c1c0797ea0a7e42b4d678cbe0 https://www.encodeproject.org/files/ENCFF023YOW/@@download/ENCFF023YOW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF351RCW bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF998MYK 1732177 ENCODE Processing Pipeline 61616e32e46f8d2f7f7596562f26bcca https://www.encodeproject.org/files/ENCFF351RCW/@@download/ENCFF351RCW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700RHH bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023YOW 12094397 ENCODE Processing Pipeline 1d333765b4e4d708a6b8b5202750649b https://www.encodeproject.org/files/ENCFF700RHH/@@download/ENCFF700RHH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF810OKU bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF255FRL 1815601 ENCODE Processing Pipeline aadd70fb47a31c9051a55a01d15a7de2 https://www.encodeproject.org/files/ENCFF810OKU/@@download/ENCFF810OKU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF255FRL bed narrowPeak optimal idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023YOW, ENCFF251YPB, ENCFF419RSJ, ENCFF954JZQ 1035891 ENCODE Processing Pipeline a6672d55836af7a7a3593d0af32917e0 https://www.encodeproject.org/files/ENCFF255FRL/@@download/ENCFF255FRL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF149ARQ bigWig signal p-value ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF266TDL, ENCFF599MVB 566726585 ENCODE Processing Pipeline f1e108a3c87decf14fe226f7ba337bdd https://www.encodeproject.org/files/ENCFF149ARQ/@@download/ENCFF149ARQ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF680SHJ bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF266TDL, ENCFF599MVB 5254209 ENCODE Processing Pipeline 9ee29cd848b56f13677e61357190a3d9 https://www.encodeproject.org/files/ENCFF680SHJ/@@download/ENCFF680SHJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375EXT bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF656HTA 11227993 ENCODE Processing Pipeline 702cb9ab133f62818f4c5f1f3192405f https://www.encodeproject.org/files/ENCFF375EXT/@@download/ENCFF375EXT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF207CLS bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF680SHJ 11715751 ENCODE Processing Pipeline 802ba949edf139d363c7d738c87e8413 https://www.encodeproject.org/files/ENCFF207CLS/@@download/ENCFF207CLS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732XGR bed narrowPeak optimal idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF190MWS, ENCFF656HTA, ENCFF680SHJ 1032500 ENCODE Processing Pipeline 31956512aead9d11c3421ce3768da5a2 https://www.encodeproject.org/files/ENCFF732XGR/@@download/ENCFF732XGR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF566IRE bed narrowPeak conservative idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF190MWS, ENCFF656HTA, ENCFF680SHJ 967682 ENCODE Processing Pipeline e0d1cf6225b70ec7b16bb34764aa814f https://www.encodeproject.org/files/ENCFF566IRE/@@download/ENCFF566IRE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF190MWS bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF266TDL, ENCFF361FUX, ENCFF599MVB 5727342 ENCODE Processing Pipeline 916969cc4f150dc25c78704a26a2fd4b https://www.encodeproject.org/files/ENCFF190MWS/@@download/ENCFF190MWS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF348QBX bigWig fold change over control ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF266TDL, ENCFF361FUX, ENCFF599MVB 679305651 ENCODE Processing Pipeline 2a343cd7a8eafda5abfa941f27ec5c82 https://www.encodeproject.org/files/ENCFF348QBX/@@download/ENCFF348QBX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF656HTA bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF361FUX, ENCFF599MVB 4701422 ENCODE Processing Pipeline cc99f3fb940e69afed4dbd187e7f1706 https://www.encodeproject.org/files/ENCFF656HTA/@@download/ENCFF656HTA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF993QBA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF732XGR 1810077 ENCODE Processing Pipeline dc750aebcc73617d624b276b439f8c3a https://www.encodeproject.org/files/ENCFF993QBA/@@download/ENCFF993QBA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF856CUY bigWig signal p-value ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF361FUX, ENCFF599MVB 505325829 ENCODE Processing Pipeline 569d0877823195514321a9431800cee5 https://www.encodeproject.org/files/ENCFF856CUY/@@download/ENCFF856CUY.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF410JJT bigBed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF190MWS 12091761 ENCODE Processing Pipeline 44518d65357abb613319c87c4eb2ae5b https://www.encodeproject.org/files/ENCFF410JJT/@@download/ENCFF410JJT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF561LPH bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF566IRE 1728846 ENCODE Processing Pipeline 5c534809d257f587e8bc8ba0b758bfb3 https://www.encodeproject.org/files/ENCFF561LPH/@@download/ENCFF561LPH.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF599UGH bigWig fold change over control ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF361FUX, ENCFF599MVB 366118927 ENCODE Processing Pipeline c5867f0d9be60eed194839324904e62c https://www.encodeproject.org/files/ENCFF599UGH/@@download/ENCFF599UGH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF162GHC bigWig signal p-value ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF266TDL, ENCFF361FUX, ENCFF599MVB 726484191 ENCODE Processing Pipeline 827be6fa2adc381ec6c7acfcd8b55045 https://www.encodeproject.org/files/ENCFF162GHC/@@download/ENCFF162GHC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF173HWC bigWig fold change over control ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF266TDL, ENCFF599MVB 426333783 ENCODE Processing Pipeline b4c3d233410776b9e5613dad49e98191 https://www.encodeproject.org/files/ENCFF173HWC/@@download/ENCFF173HWC.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RYH bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RYO 1603572864 Vishwanath Iyer, UTA 594616943fff9d12eeec3b46ea61b3ed https://www.encodeproject.org/files/ENCFF000RYH/@@download/ENCFF000RYH.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RYI bigWig base overlap signal ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 680009442 Vishwanath Iyer, UTA b22dc17c76058bedb2863ea6650660af https://www.encodeproject.org/files/ENCFF000RYI/@@download/ENCFF000RYI.bigWig hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF000RYJ bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RYP 1715139125 Vishwanath Iyer, UTA d1417675a3a73c9f349c09b0ccbdf6df https://www.encodeproject.org/files/ENCFF000RYJ/@@download/ENCFF000RYJ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RYK bigBed narrowPeak peaks ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 ENCFF001UTK 647500 Vishwanath Iyer, UTA 726c70695fad93e90920864640d78376 https://www.encodeproject.org/files/ENCFF000RYK/@@download/ENCFF000RYK.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RYM bigWig signal ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2450371727 Vishwanath Iyer, UTA 0282eec6fd400d049da8db1b301ab5e4 https://www.encodeproject.org/files/ENCFF000RYM/@@download/ENCFF000RYM.bigWig hg19 released low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF000RYO fastq reads ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1489245214 Vishwanath Iyer, UTA 65c6553a41d94e026f83f14c7aa940eb https://www.encodeproject.org/files/ENCFF000RYO/@@download/ENCFF000RYO.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RYP fastq reads ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1528047621 Vishwanath Iyer, UTA 1d1def9ab536ed88c77c918ea96dd93b https://www.encodeproject.org/files/ENCFF000RYP/@@download/ENCFF000RYP.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF001UTK bed narrowPeak peaks ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 385865 Vishwanath Iyer, UTA bea123167eb09018fddc1f18affb7aa9 https://www.encodeproject.org/files/ENCFF001UTK/@@download/ENCFF001UTK.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF002DBF bed narrowPeak optimal idr thresholded peaks ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 261259 ENCODE Consortium Analysis Working Group a4163c1c19e13c3d6733f2b633a77109 https://www.encodeproject.org/files/ENCFF002DBF/@@download/ENCFF002DBF.bed.gz hg19 released low read length, mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample ENCFF882OMB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBF 699508 ENCODE Consortium 81ffc16e142750aeffb4381644edeca2 https://www.encodeproject.org/files/ENCFF882OMB/@@download/ENCFF882OMB.bigBed hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF273JMW bam unfiltered alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RYO, ENCFF807MUK 2122323462 ENCODE Processing Pipeline 1d545b3a6dc068b403bb164ab07f3e2a https://www.encodeproject.org/files/ENCFF273JMW/@@download/ENCFF273JMW.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF406OGY bam unfiltered alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RYP, ENCFF807MUK 2219707677 ENCODE Processing Pipeline 0f2f3980917aac37e6b1de02de119c90 https://www.encodeproject.org/files/ENCFF406OGY/@@download/ENCFF406OGY.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF358WIR bam unfiltered alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RYP, ENCFF643CGH 2233177605 ENCODE Processing Pipeline 7fbb994e535b938e4c59828d30736367 https://www.encodeproject.org/files/ENCFF358WIR/@@download/ENCFF358WIR.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF296RZI bam unfiltered alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RYO, ENCFF643CGH 2128214845 ENCODE Processing Pipeline 5d941c1b2cbeea0dcf485bb27b099171 https://www.encodeproject.org/files/ENCFF296RZI/@@download/ENCFF296RZI.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF104KIS bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RYP, ENCFF807MUK 1381210309 ENCODE Processing Pipeline af8e8849cff67d4594b5c945b182c1c8 https://www.encodeproject.org/files/ENCFF104KIS/@@download/ENCFF104KIS.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF364WAK bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RYO, ENCFF807MUK 1202479705 ENCODE Processing Pipeline 0612320c587700434a6aef5322e58d39 https://www.encodeproject.org/files/ENCFF364WAK/@@download/ENCFF364WAK.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF987KST bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RYO, ENCFF643CGH 1201924338 ENCODE Processing Pipeline 36bb89b932084ea2b3e288168dd5be15 https://www.encodeproject.org/files/ENCFF987KST/@@download/ENCFF987KST.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF870YIK bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RYP, ENCFF643CGH 1380787870 ENCODE Processing Pipeline 4cac27d6ec65a8edc248fdb14a63abfb https://www.encodeproject.org/files/ENCFF870YIK/@@download/ENCFF870YIK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RZM bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RZX 827628909 Vishwanath Iyer, UTA fe704d42067e1ce265e3eaa8e0d68909 https://www.encodeproject.org/files/ENCFF000RZM/@@download/ENCFF000RZM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RZN bigWig base overlap signal ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 277555150 Vishwanath Iyer, UTA c158e59bea1530ecd7824c8e19dab722 https://www.encodeproject.org/files/ENCFF000RZN/@@download/ENCFF000RZN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000RZO bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RZY 934567132 Vishwanath Iyer, UTA f1cdeda8b02e54e5a7732af96b2636f5 https://www.encodeproject.org/files/ENCFF000RZO/@@download/ENCFF000RZO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RZW bigBed narrowPeak peaks ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTP 2087833 Vishwanath Iyer, UTA cdc52c15bbf075aa46f63f9ed28619d9 https://www.encodeproject.org/files/ENCFF000RZW/@@download/ENCFF000RZW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RZX fastq reads ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 845067563 Vishwanath Iyer, UTA 6a9a967f5fb8216c48726339eb549ce4 https://www.encodeproject.org/files/ENCFF000RZX/@@download/ENCFF000RZX.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RZY fastq reads ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 959937797 Vishwanath Iyer, UTA 4c3ffa144de1488fb762aad6c6876522 https://www.encodeproject.org/files/ENCFF000RZY/@@download/ENCFF000RZY.fastq.gz Illumina Genome Analyzer /files/ENCFF000SAZ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000SAN bigWig signal ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3220147507 Vishwanath Iyer, UTA e571b7261138ee39de4bde330018149d https://www.encodeproject.org/files/ENCFF000SAN/@@download/ENCFF000SAN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UTP bed narrowPeak peaks ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1325233 Vishwanath Iyer, UTA 2a7778dac2cb0e23cb3a83c5eea41cf9 https://www.encodeproject.org/files/ENCFF001UTP/@@download/ENCFF001UTP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002DBM bed narrowPeak optimal idr thresholded peaks ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1209029 ENCODE Consortium Analysis Working Group 160ceb49b8fe9537a5bbe91df7dd428a https://www.encodeproject.org/files/ENCFF002DBM/@@download/ENCFF002DBM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF528ERK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBM 2489907 ENCODE Consortium c5d21f9886fca26b49fb0e2dc375273d https://www.encodeproject.org/files/ENCFF528ERK/@@download/ENCFF528ERK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF574MYJ bam unfiltered alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZY, ENCFF643CGH 1218090500 ENCODE Processing Pipeline 32dc51b5bc67f8968f97ef2a3c6979a1 https://www.encodeproject.org/files/ENCFF574MYJ/@@download/ENCFF574MYJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF620YAN bam unfiltered alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZX, ENCFF807MUK 1083337102 ENCODE Processing Pipeline 6f87ed88f480e07c0124194a2355cafe https://www.encodeproject.org/files/ENCFF620YAN/@@download/ENCFF620YAN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF810AHZ bam unfiltered alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZY, ENCFF807MUK 1216751011 ENCODE Processing Pipeline 9cf968747795f484e4f6d341eec4ca3b https://www.encodeproject.org/files/ENCFF810AHZ/@@download/ENCFF810AHZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF406ZZD bam unfiltered alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZX, ENCFF643CGH 1084630647 ENCODE Processing Pipeline c6e213880a844018f355296fc6218dc1 https://www.encodeproject.org/files/ENCFF406ZZD/@@download/ENCFF406ZZD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF783NXW bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZY, ENCFF643CGH 657740067 ENCODE Processing Pipeline f3a213afb83fcb9c7e193d5ac6151cca https://www.encodeproject.org/files/ENCFF783NXW/@@download/ENCFF783NXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF470ZFI bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZX, ENCFF807MUK 588870250 ENCODE Processing Pipeline d72e5b5e8e2df7b1a8ffe9459f61f298 https://www.encodeproject.org/files/ENCFF470ZFI/@@download/ENCFF470ZFI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF252RUC bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZY, ENCFF807MUK 658182352 ENCODE Processing Pipeline 4d41ecf65a9ecac3a0c717a5a127d3dc https://www.encodeproject.org/files/ENCFF252RUC/@@download/ENCFF252RUC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591QUF bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZX, ENCFF643CGH 588473000 ENCODE Processing Pipeline f3889bd9e33035cf5dcfc403b1e688e5 https://www.encodeproject.org/files/ENCFF591QUF/@@download/ENCFF591QUF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZFR bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPR 6180675 Kevin Struhl, HMS 153709ac13ed5d680cf15b47634da362 https://www.encodeproject.org/files/ENCFF000ZFR/@@download/ENCFF000ZFR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF000ZFS fastq reads ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1123284066 Kevin Struhl, HMS fab2977fbbd0977aa65dd47234a0897d https://www.encodeproject.org/files/ENCFF000ZFS/@@download/ENCFF000ZFS.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF000ZFT bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 1 350326498 Kevin Struhl, HMS 9af9fa4587f389cd5dcc0ef6a6291f8d https://www.encodeproject.org/files/ENCFF000ZFT/@@download/ENCFF000ZFT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF000ZFV bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 1 577563038 Kevin Struhl, HMS 12d92416434d805e81f49638531648b7 https://www.encodeproject.org/files/ENCFF000ZFV/@@download/ENCFF000ZFV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF000ZFW fastq reads ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 650219021 Kevin Struhl, HMS 4108c05430cde44a4723bebef4fb2be9 https://www.encodeproject.org/files/ENCFF000ZFW/@@download/ENCFF000ZFW.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZHZ/, /files/ENCFF000ZIB/, /files/ENCFF000ZID/, /files/ENCFF000ZIF/, /files/ENCFF000ZIH/, /files/ENCFF000ZIJ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF000ZFY bigWig signal ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 340430432 Kevin Struhl, HMS 5b8e3eb1c0dab633a30673a57adc7e35 https://www.encodeproject.org/files/ENCFF000ZFY/@@download/ENCFF000ZFY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF001VPR bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2381471 Kevin Struhl, HMS 75f03cd7a494998053a03059a7bbd757 https://www.encodeproject.org/files/ENCFF001VPR/@@download/ENCFF001VPR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF002CYV bed narrowPeak optimal idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1310209 ENCODE Consortium Analysis Working Group 4de8383174f7c0b80d32d300a6cb8216 https://www.encodeproject.org/files/ENCFF002CYV/@@download/ENCFF002CYV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization missing derived_from, duplicate lane review, biological replicates with identical biosample ENCFF248AXC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYV 2681433 ENCODE Consortium ff5ba823fec386c14f0f0fbf3057b467 https://www.encodeproject.org/files/ENCFF248AXC/@@download/ENCFF248AXC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF004QLH bam unfiltered alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZFW, ENCFF643CGH 664973594 ENCODE Processing Pipeline 015a6c4215163280c878532f6e7e3718 https://www.encodeproject.org/files/ENCFF004QLH/@@download/ENCFF004QLH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF242CZF bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZFW, ENCFF643CGH 400521988 ENCODE Processing Pipeline 939d1ef1225e44285fc5127fc29e2b02 https://www.encodeproject.org/files/ENCFF242CZF/@@download/ENCFF242CZF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF021BPF bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZFS, ENCFF643CGH 769651616 ENCODE Processing Pipeline 9ef6e73191c90ef1510a7033ba36d98c https://www.encodeproject.org/files/ENCFF021BPF/@@download/ENCFF021BPF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF660RHF bam unfiltered alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZFS, ENCFF643CGH 1207433809 ENCODE Processing Pipeline 782d179093005c32256dfb77c47a11a6 https://www.encodeproject.org/files/ENCFF660RHF/@@download/ENCFF660RHF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF039UMC bam unfiltered alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZFW, ENCFF807MUK 663079050 ENCODE Processing Pipeline 492d82030c85f5c9d2cf3513937a9e61 https://www.encodeproject.org/files/ENCFF039UMC/@@download/ENCFF039UMC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF289FZF bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZFW, ENCFF807MUK 400718617 ENCODE Processing Pipeline 2f2ad3f9d482705daecd3d8f3ad60a16 https://www.encodeproject.org/files/ENCFF289FZF/@@download/ENCFF289FZF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF039ZMS bam unfiltered alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZFS, ENCFF807MUK 1202914667 ENCODE Processing Pipeline 1b021686601b15877e2f238ebefb949d https://www.encodeproject.org/files/ENCFF039ZMS/@@download/ENCFF039ZMS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF079OBK bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZFS, ENCFF807MUK 770018266 ENCODE Processing Pipeline 0c08c51c01df257fb62bd3eb0ab99f45 https://www.encodeproject.org/files/ENCFF079OBK/@@download/ENCFF079OBK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF732OTV bigWig signal p-value ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF021BPF, ENCFF252KTP 1331332715 ENCODE Processing Pipeline d54afe712b548cda3fca0266b454a2a0 https://www.encodeproject.org/files/ENCFF732OTV/@@download/ENCFF732OTV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF968VPB bigWig signal p-value ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF242CZF, ENCFF252KTP 1335615564 ENCODE Processing Pipeline dea1208cf5c51711ebb1172122a48905 https://www.encodeproject.org/files/ENCFF968VPB/@@download/ENCFF968VPB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF003EXA bigWig signal p-value ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF021BPF, ENCFF242CZF, ENCFF252KTP 1377961674 ENCODE Processing Pipeline bb784bbf9468fa9eb228fa8e342e0b6f https://www.encodeproject.org/files/ENCFF003EXA/@@download/ENCFF003EXA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF338OGN bigWig fold change over control ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF021BPF, ENCFF252KTP 891445869 ENCODE Processing Pipeline f6222f4cd471861a7e0ff493f900d2d8 https://www.encodeproject.org/files/ENCFF338OGN/@@download/ENCFF338OGN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF700NGJ bigWig fold change over control ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF242CZF, ENCFF252KTP 529561413 ENCODE Processing Pipeline b6d4ab5da9919c343df1bbfadb6b7ba8 https://www.encodeproject.org/files/ENCFF700NGJ/@@download/ENCFF700NGJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF338VNY bigWig fold change over control ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF021BPF, ENCFF242CZF, ENCFF252KTP 1175404114 ENCODE Processing Pipeline 4920ff8c24f3efe445aafd97763d26e5 https://www.encodeproject.org/files/ENCFF338VNY/@@download/ENCFF338VNY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF190LMG bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF021BPF, ENCFF242CZF, ENCFF252KTP 6013337 ENCODE Processing Pipeline 61e82f346f156dbb406daeb985620fa1 https://www.encodeproject.org/files/ENCFF190LMG/@@download/ENCFF190LMG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF136KJF bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF021BPF, ENCFF252KTP 5491799 ENCODE Processing Pipeline 2f98b375f1348e24bdd513603fc5d57c https://www.encodeproject.org/files/ENCFF136KJF/@@download/ENCFF136KJF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF052XEV bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF136KJF 11382493 ENCODE Processing Pipeline 9d6dae9647c240fe10d865aa282b0947 https://www.encodeproject.org/files/ENCFF052XEV/@@download/ENCFF052XEV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF981ZOK bed narrowPeak conservative idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF136KJF, ENCFF190LMG, ENCFF419RSJ, ENCFF644MDB 1129888 ENCODE Processing Pipeline 5e882cb0535ca17d750dc5760c2f7152 https://www.encodeproject.org/files/ENCFF981ZOK/@@download/ENCFF981ZOK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF099ADP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF981ZOK 1873591 ENCODE Processing Pipeline 29930de25450a54c38b289ddb1c949df https://www.encodeproject.org/files/ENCFF099ADP/@@download/ENCFF099ADP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF077IFH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF558PJH 1932324 ENCODE Processing Pipeline 65209cf55868de62c9d4731c367a8a2f https://www.encodeproject.org/files/ENCFF077IFH/@@download/ENCFF077IFH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF644MDB bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF242CZF, ENCFF252KTP 4866936 ENCODE Processing Pipeline a819880b556415b3b032646c72bbbb8a https://www.encodeproject.org/files/ENCFF644MDB/@@download/ENCFF644MDB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF558PJH bed narrowPeak optimal idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF136KJF, ENCFF190LMG, ENCFF419RSJ, ENCFF644MDB 1180454 ENCODE Processing Pipeline 2f169220594a901ae4ebaa4f540613b3 https://www.encodeproject.org/files/ENCFF558PJH/@@download/ENCFF558PJH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF869PVU bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF644MDB 10702824 ENCODE Processing Pipeline bdf023ab04d79a5f4edfbb9701317824 https://www.encodeproject.org/files/ENCFF869PVU/@@download/ENCFF869PVU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF835NEQ bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF190LMG 11698978 ENCODE Processing Pipeline a8394986df93b29fa0eaac1a398c7776 https://www.encodeproject.org/files/ENCFF835NEQ/@@download/ENCFF835NEQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF009VWW bigWig signal p-value ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF079OBK, ENCFF425RUE 1355854827 ENCODE Processing Pipeline f3ed44dcd31ef629d51399e829a2642e https://www.encodeproject.org/files/ENCFF009VWW/@@download/ENCFF009VWW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF326EIY bigWig fold change over control ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF079OBK, ENCFF425RUE 887806730 ENCODE Processing Pipeline 5393e4e9e840cf0b9ada7820abafaf6c https://www.encodeproject.org/files/ENCFF326EIY/@@download/ENCFF326EIY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF374FKH bed narrowPeak optimal idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF099KUG, ENCFF581HNC, ENCFF658PKF 1202193 ENCODE Processing Pipeline c4ab2acaa7200fb9186d11f8cd36679d https://www.encodeproject.org/files/ENCFF374FKH/@@download/ENCFF374FKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF821LVM bigWig signal p-value ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF079OBK, ENCFF289FZF, ENCFF425RUE 1513376052 ENCODE Processing Pipeline 6bd5a035bb2fdb49f8682647f49673e1 https://www.encodeproject.org/files/ENCFF821LVM/@@download/ENCFF821LVM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF958XTF bigWig fold change over control ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF289FZF, ENCFF425RUE 529820360 ENCODE Processing Pipeline 6b8cf5a9b884fc2e26598a285fdf563b https://www.encodeproject.org/files/ENCFF958XTF/@@download/ENCFF958XTF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF581HNC bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF079OBK, ENCFF289FZF, ENCFF425RUE 6171976 ENCODE Processing Pipeline 226d6797074c0eed8c46ef81e8200c31 https://www.encodeproject.org/files/ENCFF581HNC/@@download/ENCFF581HNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF969ENV bigBed narrowPeak optimal idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF374FKH 1971984 ENCODE Processing Pipeline 6a9cb463bcfc47e9b28ed5e047b3e050 https://www.encodeproject.org/files/ENCFF969ENV/@@download/ENCFF969ENV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF127PYL bigWig signal p-value ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF289FZF, ENCFF425RUE 1346649228 ENCODE Processing Pipeline d83432575eaf3447d9d041d3099cd19b https://www.encodeproject.org/files/ENCFF127PYL/@@download/ENCFF127PYL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF660AAM bed narrowPeak conservative idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF099KUG, ENCFF581HNC, ENCFF658PKF 1136037 ENCODE Processing Pipeline d5b175902826b05d672583a6ab37ea5a https://www.encodeproject.org/files/ENCFF660AAM/@@download/ENCFF660AAM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF024LGV bigWig fold change over control ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF079OBK, ENCFF289FZF, ENCFF425RUE 1169782266 ENCODE Processing Pipeline 959c43058327bb7edae163d1d8d7699f https://www.encodeproject.org/files/ENCFF024LGV/@@download/ENCFF024LGV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF257YHP bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF581HNC 11903592 ENCODE Processing Pipeline c671a1fc50120bc6282cef645e9a1838 https://www.encodeproject.org/files/ENCFF257YHP/@@download/ENCFF257YHP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF099KUG bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF079OBK, ENCFF425RUE 5634046 ENCODE Processing Pipeline be521fd5b10c13fdad79b6360b7a41a4 https://www.encodeproject.org/files/ENCFF099KUG/@@download/ENCFF099KUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF658PKF bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF289FZF, ENCFF425RUE 4934090 ENCODE Processing Pipeline bc55c5e801368d14b831b3e95136c066 https://www.encodeproject.org/files/ENCFF658PKF/@@download/ENCFF658PKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF468UGA bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF099KUG 11576569 ENCODE Processing Pipeline b11afeb2714b568db99821aac097d82f https://www.encodeproject.org/files/ENCFF468UGA/@@download/ENCFF468UGA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF809AJM bigBed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF658PKF 10847747 ENCODE Processing Pipeline 608fae7bda3805b7fe626336a9d42162 https://www.encodeproject.org/files/ENCFF809AJM/@@download/ENCFF809AJM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF238TCJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF660AAM 1887846 ENCODE Processing Pipeline 084fdf27d9ffc85b60231da4b864e1a4 https://www.encodeproject.org/files/ENCFF238TCJ/@@download/ENCFF238TCJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF000ZLQ bam alignments ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZLT 535640280 Peggy Farnham, USC 6bc6bbc99050130601a2350d6bb4f6f9 https://www.encodeproject.org/files/ENCFF000ZLQ/@@download/ENCFF000ZLQ.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZLR bam alignments ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZLW 621405636 Peggy Farnham, USC cd7c956392c4629f46946f15ead95985 https://www.encodeproject.org/files/ENCFF000ZLR/@@download/ENCFF000ZLR.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZLS bigBed narrowPeak peaks ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQJ 929830 Peggy Farnham, USC 23bac6d5c109a87c365f9b4ee9c52910 https://www.encodeproject.org/files/ENCFF000ZLS/@@download/ENCFF000ZLS.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000ZLT fastq reads ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 935374871 Peggy Farnham, USC 84280e7fd0ded9be984dbb6aec65bb38 https://www.encodeproject.org/files/ENCFF000ZLT/@@download/ENCFF000ZLT.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHL/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000ZLW fastq reads ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1181911160 Peggy Farnham, USC 80f43d736f250df975ab707bf0e16e55 https://www.encodeproject.org/files/ENCFF000ZLW/@@download/ENCFF000ZLW.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHM/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000ZLZ bigWig signal ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 411531509 Peggy Farnham, USC 0b37a0dc9d9ab8f515a918c08c67498b https://www.encodeproject.org/files/ENCFF000ZLZ/@@download/ENCFF000ZLZ.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001VQJ bed narrowPeak peaks ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 380954 Peggy Farnham, USC 197c425bc94cf17dcc0a553b92572aa7 https://www.encodeproject.org/files/ENCFF001VQJ/@@download/ENCFF001VQJ.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CZN bed narrowPeak optimal idr thresholded peaks ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 258184 ENCODE Consortium Analysis Working Group 3bb1a2b50508c062084f4916f14d2b83 https://www.encodeproject.org/files/ENCFF002CZN/@@download/ENCFF002CZN.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF050GUQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZN 682032 ENCODE Consortium 3677eeaa113567b343451b5cb5102443 https://www.encodeproject.org/files/ENCFF050GUQ/@@download/ENCFF050GUQ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000RSF bigWig base overlap signal ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 147842179 Vishwanath Iyer, UTA 4220a3e55a2b03312dc54e617f9fca50 https://www.encodeproject.org/files/ENCFF000RSF/@@download/ENCFF000RSF.bigWig hg19 archived low read length, low read depth missing derived_from control extremely low read depth ENCFF000RSG bam alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RSM 886181619 Vishwanath Iyer, UTA c6bf635d2aca79d018b187650ebda162 https://www.encodeproject.org/files/ENCFF000RSG/@@download/ENCFF000RSG.bam hg19 archived low read length, low read depth control extremely low read depth ENCFF000RSH bigBed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UST 4773910 Vishwanath Iyer, UTA 5e01c2fc9848d27bdbe7a0cb4a9815c4 https://www.encodeproject.org/files/ENCFF000RSH/@@download/ENCFF000RSH.bigBed hg19 archived low read length, low read depth control extremely low read depth ENCFF000RSI bigWig signal ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2162958168 Vishwanath Iyer, UTA 9e81c4b450c321317f715180a6c34f9f https://www.encodeproject.org/files/ENCFF000RSI/@@download/ENCFF000RSI.bigWig hg19 archived low read length, low read depth missing derived_from control extremely low read depth ENCFF000RSM fastq reads ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 828433754 Vishwanath Iyer, UTA 118d25425882ec15bc6159e2b1006fa9 https://www.encodeproject.org/files/ENCFF000RSM/@@download/ENCFF000RSM.fastq.gz Illumina Genome Analyzer /files/ENCFF795IME/ released low read length, low read depth control extremely low read depth ENCFF001UST bed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2600843 Vishwanath Iyer, UTA 9574fdb9b41b1a550abb70dc98e89964 https://www.encodeproject.org/files/ENCFF001UST/@@download/ENCFF001UST.bed.gz hg19 archived low read length, low read depth missing derived_from control extremely low read depth ENCFF002DAS bed narrowPeak optimal idr thresholded peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 285136 ENCODE Consortium Analysis Working Group 2aad5d993c8515e169cb23f95352a1f0 https://www.encodeproject.org/files/ENCFF002DAS/@@download/ENCFF002DAS.bed.gz hg19 archived low read length, low read depth missing derived_from control extremely low read depth ENCFF542URG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAS 802911 ENCODE Consortium 8aa72aa95295fd7b850ed02d14a12bc5 https://www.encodeproject.org/files/ENCFF542URG/@@download/ENCFF542URG.bigBed hg19 archived low read length, low read depth control extremely low read depth ENCFF219QQG bam unfiltered alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSM, ENCFF807MUK 1105392294 ENCODE Processing Pipeline f0418b7196648fdb1764711b0a5363d5 https://www.encodeproject.org/files/ENCFF219QQG/@@download/ENCFF219QQG.bam hg19 released low read length, low read depth control extremely low read depth ENCFF808DQN bam unfiltered alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSM, ENCFF643CGH 1107441513 ENCODE Processing Pipeline 80bd9b33390188ed82c65ac0125f32eb https://www.encodeproject.org/files/ENCFF808DQN/@@download/ENCFF808DQN.bam GRCh38 released low read length, low read depth control extremely low read depth ENCFF846ANN bam alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSM, ENCFF807MUK 707607854 ENCODE Processing Pipeline 5e855522c98d29adf0015d97f0b45f2f https://www.encodeproject.org/files/ENCFF846ANN/@@download/ENCFF846ANN.bam hg19 released low read length, low read depth control extremely low read depth ENCFF916RTG bam alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSM, ENCFF643CGH 707221137 ENCODE Processing Pipeline b1ca341a3c3f59580620754a65f5960f https://www.encodeproject.org/files/ENCFF916RTG/@@download/ENCFF916RTG.bam GRCh38 released low read length, low read depth control extremely low read depth ENCFF975VIV bigWig fold change over control ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF381ASB, ENCFF916RTG 188887155 ENCODE Processing Pipeline 30da221fda1ed24fe681485a88d01232 https://www.encodeproject.org/files/ENCFF975VIV/@@download/ENCFF975VIV.bigWig GRCh38 released low read length, low read depth control extremely low read depth ENCFF757DMP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419RSJ, ENCFF795PUU 271407 ENCODE Processing Pipeline 167b5df5d64777e1d02f59e0e13787b2 https://www.encodeproject.org/files/ENCFF757DMP/@@download/ENCFF757DMP.bed.gz GRCh38 released low read length, low read depth control extremely low read depth ENCFF580QUY bigWig signal p-value ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF381ASB, ENCFF916RTG 93442297 ENCODE Processing Pipeline c583bf0d80a00ef7e88a04e061e5ca48 https://www.encodeproject.org/files/ENCFF580QUY/@@download/ENCFF580QUY.bigWig GRCh38 released low read length, low read depth control extremely low read depth ENCFF639OEF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF757DMP 642519 ENCODE Processing Pipeline b5f204d6b4e016f799b42597df279641 https://www.encodeproject.org/files/ENCFF639OEF/@@download/ENCFF639OEF.bigBed GRCh38 released low read length, low read depth control extremely low read depth ENCFF795PUU bed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF381ASB, ENCFF916RTG 4465573 ENCODE Processing Pipeline af4f6957da41395a903ca9b4abee6f4d https://www.encodeproject.org/files/ENCFF795PUU/@@download/ENCFF795PUU.bed.gz GRCh38 released low read length, low read depth control extremely low read depth ENCFF264XDQ bigBed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF795PUU 9773477 ENCODE Processing Pipeline 540e5c9a5977b7e7763f60560703d8d0 https://www.encodeproject.org/files/ENCFF264XDQ/@@download/ENCFF264XDQ.bigBed GRCh38 released low read length, low read depth control extremely low read depth ENCFF262ICZ bigWig fold change over control ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF846ANN 194185788 ENCODE Processing Pipeline 7efe3177ddc728e293ef2d439d57f4d0 https://www.encodeproject.org/files/ENCFF262ICZ/@@download/ENCFF262ICZ.bigWig hg19 released low read length, low read depth control extremely low read depth ENCFF389NXH bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001TDO, ENCFF514FIR 271174 ENCODE Processing Pipeline e4c55a7f54635a869bdb1d89b41db497 https://www.encodeproject.org/files/ENCFF389NXH/@@download/ENCFF389NXH.bed.gz hg19 released low read length, low read depth control extremely low read depth ENCFF807PYI bigWig signal p-value ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF846ANN 93678868 ENCODE Processing Pipeline d6e807363c1c57fd6c1a9aeee1c75ca4 https://www.encodeproject.org/files/ENCFF807PYI/@@download/ENCFF807PYI.bigWig hg19 released low read length, low read depth control extremely low read depth ENCFF514FIR bed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF846ANN 4467249 ENCODE Processing Pipeline dd4c639b3e5251dfd1c6316f9225ab7b https://www.encodeproject.org/files/ENCFF514FIR/@@download/ENCFF514FIR.bed.gz hg19 released low read length, low read depth control extremely low read depth ENCFF405RYA bigBed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF514FIR 9768930 ENCODE Processing Pipeline c309fe52cd440e73517f3bb74a4631b9 https://www.encodeproject.org/files/ENCFF405RYA/@@download/ENCFF405RYA.bigBed hg19 released low read length, low read depth control extremely low read depth ENCFF449MUZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF389NXH 640718 ENCODE Processing Pipeline 1a6f49757963b987f7c6fe6f1e601198 https://www.encodeproject.org/files/ENCFF449MUZ/@@download/ENCFF449MUZ.bigBed hg19 released low read length, low read depth control extremely low read depth ENCFF000PQO bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PRD 837770198 Richard Myers, HAIB 904c60c41de8902725b1dbf2c5023954 https://www.encodeproject.org/files/ENCFF000PQO/@@download/ENCFF000PQO.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PQQ bigBed broadPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHS 360482 Richard Myers, HAIB 9d20785070ad500ab8da6d782fe65be8 https://www.encodeproject.org/files/ENCFF000PQQ/@@download/ENCFF000PQQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PQR bigBed broadPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHT 367806 Richard Myers, HAIB b75053d433a7817723b9abe5e9540fc3 https://www.encodeproject.org/files/ENCFF000PQR/@@download/ENCFF000PQR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PQS bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PRB 618533308 Richard Myers, HAIB 59f601ed123ff1e9796f9f6e219e216c https://www.encodeproject.org/files/ENCFF000PQS/@@download/ENCFF000PQS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PQT bigWig raw signal ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 66760316 Richard Myers, HAIB 309df2c50011062abf0e1fd73bf02c1b https://www.encodeproject.org/files/ENCFF000PQT/@@download/ENCFF000PQT.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PQV bigWig raw signal ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 54236531 Richard Myers, HAIB 2d7fd38e258111241ec2bc716db5b675 https://www.encodeproject.org/files/ENCFF000PQV/@@download/ENCFF000PQV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PRB fastq reads ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 987165474 Richard Myers, HAIB 9ed041a12408cb8d80fceed685c7f51f https://www.encodeproject.org/files/ENCFF000PRB/@@download/ENCFF000PRB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POQ/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PRD fastq reads ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1433400854 Richard Myers, HAIB 02e1fd0f16a4a0bbb446a9c2ce51d11d https://www.encodeproject.org/files/ENCFF000PRD/@@download/ENCFF000PRD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POO/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001UHS bed broadPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 1 182194 Richard Myers, HAIB 8c43249891e9ab4f869842b225bba31b https://www.encodeproject.org/files/ENCFF001UHS/@@download/ENCFF001UHS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UHT bed broadPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 1 199130 Richard Myers, HAIB ed47a2448920a88b16add0956c3b76f8 https://www.encodeproject.org/files/ENCFF001UHT/@@download/ENCFF001UHT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CLE bed narrowPeak optimal idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 346642 ENCODE Consortium Analysis Working Group fff8ca7b7979ca058d515c69e974c367 https://www.encodeproject.org/files/ENCFF002CLE/@@download/ENCFF002CLE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF460ZRI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLE 944789 ENCODE Consortium 12ff96e7ea0a96019aac3c3a0831bb99 https://www.encodeproject.org/files/ENCFF460ZRI/@@download/ENCFF460ZRI.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF446TLJ bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRB, ENCFF643CGH 398380900 ENCODE Processing Pipeline 0669c60d4c99ac197a5838cedec8d3d5 https://www.encodeproject.org/files/ENCFF446TLJ/@@download/ENCFF446TLJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF765NFJ bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRD, ENCFF643CGH 552890628 ENCODE Processing Pipeline c17d13bf3339bdebb3b824bab11d6399 https://www.encodeproject.org/files/ENCFF765NFJ/@@download/ENCFF765NFJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF486FRS bam unfiltered alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRB, ENCFF643CGH 1211019015 ENCODE Processing Pipeline 4009ff0f1e60ff73ff8d8863e8c2b97a https://www.encodeproject.org/files/ENCFF486FRS/@@download/ENCFF486FRS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF279GXK bam unfiltered alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRD, ENCFF643CGH 1741297102 ENCODE Processing Pipeline 88d9e1438a98a3f0d09fc035de53358c https://www.encodeproject.org/files/ENCFF279GXK/@@download/ENCFF279GXK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF262TII bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRB, ENCFF807MUK 398590956 ENCODE Processing Pipeline 24b83281ca0401b087bc93eac85d3693 https://www.encodeproject.org/files/ENCFF262TII/@@download/ENCFF262TII.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF403HYD bam unfiltered alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRB, ENCFF807MUK 1208395274 ENCODE Processing Pipeline 55f556465a6b2ba5bc72bff06c48800f https://www.encodeproject.org/files/ENCFF403HYD/@@download/ENCFF403HYD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF388UBE bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRD, ENCFF807MUK 553190048 ENCODE Processing Pipeline dce0a560258678c452ac0edc6ea8d2c4 https://www.encodeproject.org/files/ENCFF388UBE/@@download/ENCFF388UBE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF238YOA bam unfiltered alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRD, ENCFF807MUK 1737748791 ENCODE Processing Pipeline 83899478ab778d231b2e3200aa103d7e https://www.encodeproject.org/files/ENCFF238YOA/@@download/ENCFF238YOA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF355CGV bigWig signal p-value ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF249PQD, ENCFF446TLJ, ENCFF741TQN 475048639 ENCODE Processing Pipeline b6d606bc0b4caa08add9133b01f963b6 https://www.encodeproject.org/files/ENCFF355CGV/@@download/ENCFF355CGV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF309MID bigWig signal p-value ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF741TQN, ENCFF765NFJ 435226026 ENCODE Processing Pipeline 10a9e993940e581a802f86c17a38a86d https://www.encodeproject.org/files/ENCFF309MID/@@download/ENCFF309MID.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF602TXA bigWig signal p-value ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249PQD, ENCFF446TLJ, ENCFF741TQN, ENCFF765NFJ 505773423 ENCODE Processing Pipeline 03e1b0021cf842f6d1f66130b7b0364e https://www.encodeproject.org/files/ENCFF602TXA/@@download/ENCFF602TXA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF932WOC bigWig fold change over control ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF741TQN, ENCFF765NFJ 317808827 ENCODE Processing Pipeline 5ee0edc1297504aa97ed392131b646b8 https://www.encodeproject.org/files/ENCFF932WOC/@@download/ENCFF932WOC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF185KAS bigWig fold change over control ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF249PQD, ENCFF446TLJ, ENCFF741TQN 290540053 ENCODE Processing Pipeline 7346b600ac00501c4eef58d1a08d232b https://www.encodeproject.org/files/ENCFF185KAS/@@download/ENCFF185KAS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF066KEN bigWig fold change over control ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249PQD, ENCFF446TLJ, ENCFF741TQN, ENCFF765NFJ 493662745 ENCODE Processing Pipeline 7f3b7532116ff9117ade2c62180d41c7 https://www.encodeproject.org/files/ENCFF066KEN/@@download/ENCFF066KEN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF242XLD bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF741TQN, ENCFF765NFJ 5464521 ENCODE Processing Pipeline 1d00b436a9fb979676abcb3f83ed65b1 https://www.encodeproject.org/files/ENCFF242XLD/@@download/ENCFF242XLD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF391NCE bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF249PQD, ENCFF446TLJ, ENCFF741TQN 5460494 ENCODE Processing Pipeline bee226fa9de4ef50059d51fb95804ada https://www.encodeproject.org/files/ENCFF391NCE/@@download/ENCFF391NCE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF976LVG bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249PQD, ENCFF446TLJ, ENCFF741TQN, ENCFF765NFJ 6226210 ENCODE Processing Pipeline bb4ff69cae1d6cafa29045e3016b3836 https://www.encodeproject.org/files/ENCFF976LVG/@@download/ENCFF976LVG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF701FPS bigBed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF242XLD 12935964 ENCODE Processing Pipeline ee5e744c9d53d40a842b62f2779393fe https://www.encodeproject.org/files/ENCFF701FPS/@@download/ENCFF701FPS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF871STF bed narrowPeak conservative idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF242XLD, ENCFF391NCE, ENCFF419RSJ, ENCFF976LVG 290775 ENCODE Processing Pipeline e2962adbbc1cfd09e8ed851114568309 https://www.encodeproject.org/files/ENCFF871STF/@@download/ENCFF871STF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF895FGD bigBed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF391NCE 12949238 ENCODE Processing Pipeline b533e929a4d9e9d3adef6bfc3812000f https://www.encodeproject.org/files/ENCFF895FGD/@@download/ENCFF895FGD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF023DDD bigBed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF976LVG 13195252 ENCODE Processing Pipeline d25bba793df97b35321cbe4b8e9c50a6 https://www.encodeproject.org/files/ENCFF023DDD/@@download/ENCFF023DDD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF234TBW bed narrowPeak optimal idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF242XLD, ENCFF391NCE, ENCFF419RSJ, ENCFF976LVG 297220 ENCODE Processing Pipeline d5e0251abcd3f4807e1080c7dee2796e https://www.encodeproject.org/files/ENCFF234TBW/@@download/ENCFF234TBW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF887YWN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF234TBW 671976 ENCODE Processing Pipeline 5eb16d4edab03a0b170d19d44550186d https://www.encodeproject.org/files/ENCFF887YWN/@@download/ENCFF887YWN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF932DWJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF871STF 663221 ENCODE Processing Pipeline c2d98b3cbfbced6dd16150f68e206a03 https://www.encodeproject.org/files/ENCFF932DWJ/@@download/ENCFF932DWJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF416NFX bigWig signal p-value ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 497327097 ENCODE Processing Pipeline 2d3d1749d2f041f5c8fb3a1e5f349baf https://www.encodeproject.org/files/ENCFF416NFX/@@download/ENCFF416NFX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF154YDH bigWig fold change over control ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 317993708 ENCODE Processing Pipeline 1ca3ff27ca126501623fd2a61828f11b https://www.encodeproject.org/files/ENCFF154YDH/@@download/ENCFF154YDH.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF840JHF bigWig signal p-value ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF262TII, ENCFF292YHA, ENCFF782VTV 456369210 ENCODE Processing Pipeline 3ad0267829c4c5256bffb75a3b373056 https://www.encodeproject.org/files/ENCFF840JHF/@@download/ENCFF840JHF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF721BFJ bigWig fold change over control ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF262TII, ENCFF292YHA, ENCFF782VTV 289192645 ENCODE Processing Pipeline d59033f6db1c5632b31b7995a5571b9c https://www.encodeproject.org/files/ENCFF721BFJ/@@download/ENCFF721BFJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF956IIE bigWig signal p-value ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF262TII, ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 642446064 ENCODE Processing Pipeline 4ac3a1d6789b3fa8fecb73f2abadf2bf https://www.encodeproject.org/files/ENCFF956IIE/@@download/ENCFF956IIE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF580VSV bigWig fold change over control ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF262TII, ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 493262333 ENCODE Processing Pipeline 49516d721dc58f092f03c89590c49661 https://www.encodeproject.org/files/ENCFF580VSV/@@download/ENCFF580VSV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF243XCD bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF262TII, ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 6221636 ENCODE Processing Pipeline 941ea8dc16aa2f7e950b3ef5009170e4 https://www.encodeproject.org/files/ENCFF243XCD/@@download/ENCFF243XCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF999FLX bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 5560828 ENCODE Processing Pipeline 0fc07fb8e80a7b3c915d2f8e7daafab8 https://www.encodeproject.org/files/ENCFF999FLX/@@download/ENCFF999FLX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF602IZZ bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF262TII, ENCFF292YHA, ENCFF782VTV 5453299 ENCODE Processing Pipeline a174f43b96491f8700de62911f5d4e4b https://www.encodeproject.org/files/ENCFF602IZZ/@@download/ENCFF602IZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF731SOW bigBed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF999FLX 13007054 ENCODE Processing Pipeline 9905098009ddaa2cf0a494ac307e6560 https://www.encodeproject.org/files/ENCFF731SOW/@@download/ENCFF731SOW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF485XKO bigBed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF602IZZ 12918630 ENCODE Processing Pipeline 670573f35d93c8cb4a76b60912245c5d https://www.encodeproject.org/files/ENCFF485XKO/@@download/ENCFF485XKO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF454VVW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF575XQE 663625 ENCODE Processing Pipeline 26673391749907d4893670b308bf4150 https://www.encodeproject.org/files/ENCFF454VVW/@@download/ENCFF454VVW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF105XVT bigBed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF243XCD 13190194 ENCODE Processing Pipeline 21ee1d2f208ae437a26d91f9fb443dfa https://www.encodeproject.org/files/ENCFF105XVT/@@download/ENCFF105XVT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF430CEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF345GZF 674085 ENCODE Processing Pipeline c5384dbbc0a619ef3ee144d1315ce792 https://www.encodeproject.org/files/ENCFF430CEJ/@@download/ENCFF430CEJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF575XQE bed narrowPeak conservative idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF243XCD, ENCFF602IZZ, ENCFF999FLX 291813 ENCODE Processing Pipeline 2e9e9aaee807d39239ac170a30cf8a5f https://www.encodeproject.org/files/ENCFF575XQE/@@download/ENCFF575XQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF345GZF bed narrowPeak optimal idr thresholded peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF243XCD, ENCFF602IZZ, ENCFF999FLX 299587 ENCODE Processing Pipeline 832d28b82a0ce751fca92ccb2b2b795e https://www.encodeproject.org/files/ENCFF345GZF/@@download/ENCFF345GZF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PNE bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PNM 434234031 Richard Myers, HAIB 862783b386ad4667c3c2abc78788f4d3 https://www.encodeproject.org/files/ENCFF000PNE/@@download/ENCFF000PNE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PNF bigBed broadPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UHE 827381 Richard Myers, HAIB ab913dfd1ba87b5730ab19822c430f21 https://www.encodeproject.org/files/ENCFF000PNF/@@download/ENCFF000PNF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PNG bigBed broadPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UHF 956343 Richard Myers, HAIB 6f5fabbc1d92a0858a11729732b58526 https://www.encodeproject.org/files/ENCFF000PNG/@@download/ENCFF000PNG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PNH bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PNT 1226363901 Richard Myers, HAIB 9819402942eba931d0b376af7ddabc93 https://www.encodeproject.org/files/ENCFF000PNH/@@download/ENCFF000PNH.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PNJ bigWig raw signal ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 45236826 Richard Myers, HAIB 0de2373773795528cc106d36c9d22c4c https://www.encodeproject.org/files/ENCFF000PNJ/@@download/ENCFF000PNJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000PNK bigWig raw signal ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 70395093 Richard Myers, HAIB 32abd144e7c243d18c805dd4c7a626cc https://www.encodeproject.org/files/ENCFF000PNK/@@download/ENCFF000PNK.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000PNM fastq reads ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 538420657 Richard Myers, HAIB 4a9a1d7fab45d725e799cba4cadf14b3 https://www.encodeproject.org/files/ENCFF000PNM/@@download/ENCFF000PNM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POO/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000PNT fastq reads ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1490539307 Richard Myers, HAIB 4e09b791702c937e638007ad64bf2785 https://www.encodeproject.org/files/ENCFF000PNT/@@download/ENCFF000PNT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000POQ/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001UHE bed broadPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 410608 Richard Myers, HAIB 92a3618d434809d3ba6425c87985209c https://www.encodeproject.org/files/ENCFF001UHE/@@download/ENCFF001UHE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UHF bed broadPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 551312 Richard Myers, HAIB 0817b6d1f2ac0fdb7c331342729f8a41 https://www.encodeproject.org/files/ENCFF001UHF/@@download/ENCFF001UHF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF002CKX bed narrowPeak optimal idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 540805 ENCODE Consortium Analysis Working Group ce06a76967ec69ad203d94a245f579bf https://www.encodeproject.org/files/ENCFF002CKX/@@download/ENCFF002CKX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF536QCV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CKX 1512962 ENCODE Consortium 534d20516cf80ac8dec991ffcbf1b29b https://www.encodeproject.org/files/ENCFF536QCV/@@download/ENCFF536QCV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF704XJN bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNM, ENCFF643CGH 272164127 ENCODE Processing Pipeline d8c8392ab6b77a2a008954ccca66300a https://www.encodeproject.org/files/ENCFF704XJN/@@download/ENCFF704XJN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF555CHL bam unfiltered alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNM, ENCFF643CGH 675473196 ENCODE Processing Pipeline 3ca7508adadd0a9def203caf666d9cd6 https://www.encodeproject.org/files/ENCFF555CHL/@@download/ENCFF555CHL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF739TSH bam unfiltered alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNT, ENCFF643CGH 1781619886 ENCODE Processing Pipeline 76d0e09d3c1530c531deb107059cfccd https://www.encodeproject.org/files/ENCFF739TSH/@@download/ENCFF739TSH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF263PSR bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNT, ENCFF643CGH 779624046 ENCODE Processing Pipeline 68d513e1ed96206df12c4d7426d0cfbc https://www.encodeproject.org/files/ENCFF263PSR/@@download/ENCFF263PSR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF988KTE bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNM, ENCFF807MUK 272457289 ENCODE Processing Pipeline 82009fc352965563b1d7683e808e3e48 https://www.encodeproject.org/files/ENCFF988KTE/@@download/ENCFF988KTE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF747MOU bam unfiltered alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNM, ENCFF807MUK 674223239 ENCODE Processing Pipeline 852de6b30b62b7bb449a0515a1b98e23 https://www.encodeproject.org/files/ENCFF747MOU/@@download/ENCFF747MOU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF541JLQ bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNT, ENCFF807MUK 780184526 ENCODE Processing Pipeline c83e2c246f862503ee31529b3ce6fe80 https://www.encodeproject.org/files/ENCFF541JLQ/@@download/ENCFF541JLQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF420ZWG bam unfiltered alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNT, ENCFF807MUK 1778995448 ENCODE Processing Pipeline e6d5c6097fc56573f6d0b44bd3d232f3 https://www.encodeproject.org/files/ENCFF420ZWG/@@download/ENCFF420ZWG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF836RED bigWig signal p-value ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF704XJN, ENCFF741TQN 422945130 ENCODE Processing Pipeline 11f8776ad1df44eec70208e45d9d20b5 https://www.encodeproject.org/files/ENCFF836RED/@@download/ENCFF836RED.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF933QQE bigWig signal p-value ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF249PQD, ENCFF263PSR, ENCFF741TQN 488152559 ENCODE Processing Pipeline a54c9541eb4d442668e989bf32abfe88 https://www.encodeproject.org/files/ENCFF933QQE/@@download/ENCFF933QQE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF276SWJ bigWig signal p-value ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249PQD, ENCFF263PSR, ENCFF704XJN, ENCFF741TQN 496923438 ENCODE Processing Pipeline 5a39379af5f4f7f092f568bb89fdd2ae https://www.encodeproject.org/files/ENCFF276SWJ/@@download/ENCFF276SWJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF481ONN bigWig fold change over control ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF704XJN, ENCFF741TQN 213605289 ENCODE Processing Pipeline 35ae4d12e8ad8d873c910c95c565fc46 https://www.encodeproject.org/files/ENCFF481ONN/@@download/ENCFF481ONN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF364GBS bigWig fold change over control ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF249PQD, ENCFF263PSR, ENCFF741TQN 321039917 ENCODE Processing Pipeline 126d16db09da04b689db821dc9ef33c3 https://www.encodeproject.org/files/ENCFF364GBS/@@download/ENCFF364GBS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF878OUJ bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249PQD, ENCFF263PSR, ENCFF704XJN, ENCFF741TQN 6609303 ENCODE Processing Pipeline 07f0549225bb4be0c330debd97e354b4 https://www.encodeproject.org/files/ENCFF878OUJ/@@download/ENCFF878OUJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF378NKG bigWig fold change over control ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF249PQD, ENCFF263PSR, ENCFF704XJN, ENCFF741TQN 435851484 ENCODE Processing Pipeline 5d8f3e2c03db7fc28d1c6febd4b8aeb9 https://www.encodeproject.org/files/ENCFF378NKG/@@download/ENCFF378NKG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF387XMX bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249PQD, ENCFF704XJN, ENCFF741TQN 4128875 ENCODE Processing Pipeline 43c8b68fa74a8ac83af2ec476cdc5307 https://www.encodeproject.org/files/ENCFF387XMX/@@download/ENCFF387XMX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF495JBN bigBed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF878OUJ 12365049 ENCODE Processing Pipeline cd6dd12b7aef81fd621b85fba6c0cb64 https://www.encodeproject.org/files/ENCFF495JBN/@@download/ENCFF495JBN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF493GSM bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF249PQD, ENCFF263PSR, ENCFF741TQN 6328196 ENCODE Processing Pipeline 66a379decf97b37e3898fee830878d53 https://www.encodeproject.org/files/ENCFF493GSM/@@download/ENCFF493GSM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF925TDZ bigBed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF387XMX 8857495 ENCODE Processing Pipeline f9fd9da8953622100162ef2a7c63bd78 https://www.encodeproject.org/files/ENCFF925TDZ/@@download/ENCFF925TDZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF497QSA bigBed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF493GSM 12345799 ENCODE Processing Pipeline f59c71413931dfbaf01bee99a69b9edf https://www.encodeproject.org/files/ENCFF497QSA/@@download/ENCFF497QSA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF973TES bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF442SGT 1146921 ENCODE Processing Pipeline 1497b49c5d60ea159e21e2e0ebae45cb https://www.encodeproject.org/files/ENCFF973TES/@@download/ENCFF973TES.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF565SUC bed narrowPeak optimal idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387XMX, ENCFF419RSJ, ENCFF493GSM, ENCFF878OUJ 518246 ENCODE Processing Pipeline 9b8590f267d6d01e9ab2afd1220a7485 https://www.encodeproject.org/files/ENCFF565SUC/@@download/ENCFF565SUC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF442SGT bed narrowPeak conservative idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF387XMX, ENCFF419RSJ, ENCFF493GSM, ENCFF878OUJ 481754 ENCODE Processing Pipeline 139bb3000f59fc41f0cd1dd928761002 https://www.encodeproject.org/files/ENCFF442SGT/@@download/ENCFF442SGT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF664JCZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF565SUC 1205431 ENCODE Processing Pipeline 867556ca2e4b2a9711381019b501be26 https://www.encodeproject.org/files/ENCFF664JCZ/@@download/ENCFF664JCZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF084KNT bigWig signal p-value ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF988KTE 410750995 ENCODE Processing Pipeline 0520fa4e4e847bf811827d24400faf68 https://www.encodeproject.org/files/ENCFF084KNT/@@download/ENCFF084KNT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF268HHX bigWig fold change over control ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF988KTE 214558670 ENCODE Processing Pipeline 955a12f9eb8e4c67e17fa0494c049b4f https://www.encodeproject.org/files/ENCFF268HHX/@@download/ENCFF268HHX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF427RAW bigWig signal p-value ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV 480710435 ENCODE Processing Pipeline 71494db4db4be51338a99e81de486923 https://www.encodeproject.org/files/ENCFF427RAW/@@download/ENCFF427RAW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF089OGX bigWig signal p-value ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV, ENCFF988KTE 622031955 ENCODE Processing Pipeline 7b6029bdd439ff7e17dba75b95245c3e https://www.encodeproject.org/files/ENCFF089OGX/@@download/ENCFF089OGX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF981PKL bigWig fold change over control ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV 325265171 ENCODE Processing Pipeline 24b389bc5f665151f2e1d5d83e01f906 https://www.encodeproject.org/files/ENCFF981PKL/@@download/ENCFF981PKL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF800QHJ bigWig fold change over control ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV, ENCFF988KTE 434797583 ENCODE Processing Pipeline e89aa13a830c1eb8a7f343bf9049a664 https://www.encodeproject.org/files/ENCFF800QHJ/@@download/ENCFF800QHJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF856HRW bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV 6347130 ENCODE Processing Pipeline eb3294abe547a5b343fbcceab1077db5 https://www.encodeproject.org/files/ENCFF856HRW/@@download/ENCFF856HRW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF078TDL bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV, ENCFF988KTE 6609503 ENCODE Processing Pipeline 9bc842da7087524d13ea0e33ecc97127 https://www.encodeproject.org/files/ENCFF078TDL/@@download/ENCFF078TDL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF838GJX bigBed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF078TDL 12362174 ENCODE Processing Pipeline d2815cc2509c7b14370a886e6ad27914 https://www.encodeproject.org/files/ENCFF838GJX/@@download/ENCFF838GJX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF680IKB bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF988KTE 4132059 ENCODE Processing Pipeline 1c8be2ec330283b8ed2fbaa64a3ab22b https://www.encodeproject.org/files/ENCFF680IKB/@@download/ENCFF680IKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF116CKX bigBed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF680IKB 8860206 ENCODE Processing Pipeline 8ae79a7390c810526c18433242a12121 https://www.encodeproject.org/files/ENCFF116CKX/@@download/ENCFF116CKX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF137UNH bigBed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF856HRW 12333028 ENCODE Processing Pipeline 9f55df9fc038e7ac8abb87fa4c73458c https://www.encodeproject.org/files/ENCFF137UNH/@@download/ENCFF137UNH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF116TSU bed narrowPeak conservative idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF078TDL, ENCFF680IKB, ENCFF856HRW 482147 ENCODE Processing Pipeline e5433e7344bc179ed513dbb8f29f0123 https://www.encodeproject.org/files/ENCFF116TSU/@@download/ENCFF116TSU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF545NHH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF116TSU 1146229 ENCODE Processing Pipeline ef0f9fe181ffd2d43ce9fe20b06659f6 https://www.encodeproject.org/files/ENCFF545NHH/@@download/ENCFF545NHH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF690CPE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF992LSQ 1202370 ENCODE Processing Pipeline 7a3b41b44c06e37505f3ecf4ef2f25cd https://www.encodeproject.org/files/ENCFF690CPE/@@download/ENCFF690CPE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF992LSQ bed narrowPeak optimal idr thresholded peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF078TDL, ENCFF680IKB, ENCFF856HRW 517708 ENCODE Processing Pipeline 81d6b8fdb37687f1bf9564bd4fc59102 https://www.encodeproject.org/files/ENCFF992LSQ/@@download/ENCFF992LSQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF741YBV fastq reads ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 1 ENCFF746OCB 2943256572 Michael Snyder, Stanford 8456328018aa7bb348f05325ca5b12fd SRA:SRR6213694 https://www.encodeproject.org/files/ENCFF741YBV/@@download/ENCFF741YBV.fastq.gz Illumina HiSeq 4000 /files/ENCFF561JAR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF746OCB fastq reads ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 1 100 paired-ended 2 ENCFF741YBV 3358667339 Michael Snyder, Stanford b0962e53da0ba69d689abbaf5b79b015 SRA:SRR6213694 https://www.encodeproject.org/files/ENCFF746OCB/@@download/ENCFF746OCB.fastq.gz Illumina HiSeq 4000 /files/ENCFF174XNW/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF797MSE bam unfiltered alignments ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF741YBV, ENCFF746OCB, ENCFF807MUK 5757123628 ENCODE Processing Pipeline 50ecd9630152272ed9443e3d9f6c62fd https://www.encodeproject.org/files/ENCFF797MSE/@@download/ENCFF797MSE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF478WFF bam unfiltered alignments ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF643CGH, ENCFF741YBV, ENCFF746OCB 5757479492 ENCODE Processing Pipeline 4319b85d6b0eccb85e1ffb2883e089ad https://www.encodeproject.org/files/ENCFF478WFF/@@download/ENCFF478WFF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF599CGM bam alignments ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF643CGH, ENCFF741YBV, ENCFF746OCB 3580073893 ENCODE Processing Pipeline 9625ee4dc4617571a3fadf4b28ba2739 https://www.encodeproject.org/files/ENCFF599CGM/@@download/ENCFF599CGM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF975GAM bam alignments ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF741YBV, ENCFF746OCB, ENCFF807MUK 3576448677 ENCODE Processing Pipeline 8fb42cc6e2419cd54a81283d1f5bed32 https://www.encodeproject.org/files/ENCFF975GAM/@@download/ENCFF975GAM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF685BVP bigWig signal p-value ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF900VZW, ENCFF975GAM 1069564948 ENCODE Processing Pipeline a7005eb8b0ff1300727a02c27e6a6f9f https://www.encodeproject.org/files/ENCFF685BVP/@@download/ENCFF685BVP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF808KYU bigWig fold change over control ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF900VZW, ENCFF975GAM 1301515661 ENCODE Processing Pipeline 411332ccc834a53d059c512d9508ea41 https://www.encodeproject.org/files/ENCFF808KYU/@@download/ENCFF808KYU.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF694TNU bigBed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF435JAM 13575234 ENCODE Processing Pipeline fc4336aef245c4a28fb39390690c71b9 https://www.encodeproject.org/files/ENCFF694TNU/@@download/ENCFF694TNU.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF825ZII bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF239EJM 1345084 ENCODE Processing Pipeline a54a9ba5934c8a9cedd9ea09d2b14c42 https://www.encodeproject.org/files/ENCFF825ZII/@@download/ENCFF825ZII.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF435JAM bed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF900VZW, ENCFF975GAM 6914692 ENCODE Processing Pipeline e833e9698dc5df2dabd14273a537c736 https://www.encodeproject.org/files/ENCFF435JAM/@@download/ENCFF435JAM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF239EJM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF001TDO, ENCFF435JAM 629010 ENCODE Processing Pipeline 999a4fc5ad3abd222034a1737795fa25 https://www.encodeproject.org/files/ENCFF239EJM/@@download/ENCFF239EJM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF691IPU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF419RSJ, ENCFF712PGZ 643176 ENCODE Processing Pipeline f7dcdce4c0002aea60631779c9aa27d2 https://www.encodeproject.org/files/ENCFF691IPU/@@download/ENCFF691IPU.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF423FWZ bigWig fold change over control ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF599CGM, ENCFF804BRR 1302941938 ENCODE Processing Pipeline 1d6f509707259033b1209c1c2514452a https://www.encodeproject.org/files/ENCFF423FWZ/@@download/ENCFF423FWZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF594BPL bigBed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF712PGZ 13645992 ENCODE Processing Pipeline 286413d91bf21a8f7c1700e7c8204790 https://www.encodeproject.org/files/ENCFF594BPL/@@download/ENCFF594BPL.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF078RNW bigWig signal p-value ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF599CGM, ENCFF804BRR 1328372994 ENCODE Processing Pipeline 8a6bf299e3679ce9a373ee2c50ff3112 https://www.encodeproject.org/files/ENCFF078RNW/@@download/ENCFF078RNW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF712PGZ bed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF599CGM, ENCFF804BRR 6964759 ENCODE Processing Pipeline c02701e88fc6bb981d6bf0015a036af9 https://www.encodeproject.org/files/ENCFF712PGZ/@@download/ENCFF712PGZ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF957VMW bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF691IPU 1369106 ENCODE Processing Pipeline 5a371f317b19c2b80fdb858cd8e262db https://www.encodeproject.org/files/ENCFF957VMW/@@download/ENCFF957VMW.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000QCL bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QCX 1003209775 Richard Myers, HAIB e589e938cdb5e2cd7c3d851583e41d07 https://www.encodeproject.org/files/ENCFF000QCL/@@download/ENCFF000QCL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCM bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QCW 766714301 Richard Myers, HAIB d76bb63fb3ad2f287f220481e509cf56 https://www.encodeproject.org/files/ENCFF000QCM/@@download/ENCFF000QCM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCN bigBed broadPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKN 648385 Richard Myers, HAIB 8ee48d4a512a3857fb25e9c0927c8796 https://www.encodeproject.org/files/ENCFF000QCN/@@download/ENCFF000QCN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCO bigBed broadPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKO 328928 Richard Myers, HAIB 16f652c702c105c75aee212c83f9dc62 https://www.encodeproject.org/files/ENCFF000QCO/@@download/ENCFF000QCO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCP bigWig raw signal ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 27932557 Richard Myers, HAIB 5f3ee808aa9708ece85f7f0f192e2ee1 https://www.encodeproject.org/files/ENCFF000QCP/@@download/ENCFF000QCP.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCQ bigWig raw signal ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 13940871 Richard Myers, HAIB a3534bf0934699b9e8c3215cddf56424 https://www.encodeproject.org/files/ENCFF000QCQ/@@download/ENCFF000QCQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCW fastq reads ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 869258416 Richard Myers, HAIB e380bdf76068f311df681e162f4eb5ee https://www.encodeproject.org/files/ENCFF000QCW/@@download/ENCFF000QCW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QCX fastq reads ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1033479208 Richard Myers, HAIB 36ba7684f96ef2a6776670b07f8bf8b7 https://www.encodeproject.org/files/ENCFF000QCX/@@download/ENCFF000QCX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UKN bed broadPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 1 373967 Richard Myers, HAIB 69370eb3b54abca4fb9922bcf9895392 https://www.encodeproject.org/files/ENCFF001UKN/@@download/ENCFF001UKN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UKO bed broadPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 1 185372 Richard Myers, HAIB d34bfc68a5e6ac6ecb52a876d9d93c74 https://www.encodeproject.org/files/ENCFF001UKO/@@download/ENCFF001UKO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CMF bed narrowPeak optimal idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 312017 ENCODE Consortium Analysis Working Group efd79bfac03aaccd0ab8859080c6ee93 https://www.encodeproject.org/files/ENCFF002CMF/@@download/ENCFF002CMF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF230OTB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMF 642595 ENCODE Consortium 6b67264986b3d3577ebdbd839940060c https://www.encodeproject.org/files/ENCFF230OTB/@@download/ENCFF230OTB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF665LOG bam unfiltered alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCW, ENCFF643CGH 934269192 ENCODE Processing Pipeline fe5ccfb579c4021740b8545bdaad9e8d https://www.encodeproject.org/files/ENCFF665LOG/@@download/ENCFF665LOG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF204TUQ bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCW, ENCFF643CGH 246811240 ENCODE Processing Pipeline 377dca7f1fd60314e38691c3c3b7ae7d https://www.encodeproject.org/files/ENCFF204TUQ/@@download/ENCFF204TUQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF546IMN bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCX, ENCFF643CGH 586250514 ENCODE Processing Pipeline 2386e332922f0541ce3244b8686354a3 https://www.encodeproject.org/files/ENCFF546IMN/@@download/ENCFF546IMN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF905ENZ bam unfiltered alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCX, ENCFF643CGH 1211907180 ENCODE Processing Pipeline 045d900ea7a1f2663bff0c5f69682db5 https://www.encodeproject.org/files/ENCFF905ENZ/@@download/ENCFF905ENZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF852HXT bam unfiltered alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCW, ENCFF807MUK 932949145 ENCODE Processing Pipeline 7a2bee2fcfeaf162281acf3678d2685b https://www.encodeproject.org/files/ENCFF852HXT/@@download/ENCFF852HXT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF520WAB bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCW, ENCFF807MUK 246971146 ENCODE Processing Pipeline 1e35756296cde948e87bc9b786f83b6f https://www.encodeproject.org/files/ENCFF520WAB/@@download/ENCFF520WAB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF262GNW bam unfiltered alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCX, ENCFF807MUK 1210166944 ENCODE Processing Pipeline d481d07e22c8bb2469c6a254bf67c4d2 https://www.encodeproject.org/files/ENCFF262GNW/@@download/ENCFF262GNW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF294HHJ bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCX, ENCFF807MUK 586538608 ENCODE Processing Pipeline 9df4f20d23579efe405286e18b24958c https://www.encodeproject.org/files/ENCFF294HHJ/@@download/ENCFF294HHJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF502FFY bigWig signal p-value ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF204TUQ, ENCFF772PJM 177040418 ENCODE Processing Pipeline 6614ecba426faa9203e7e1a4b597f9d9 https://www.encodeproject.org/files/ENCFF502FFY/@@download/ENCFF502FFY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF011JMK bigBed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF755HSD 5434271 ENCODE Processing Pipeline 0f4a31d6cbdfc8371cd2440b40f87dab https://www.encodeproject.org/files/ENCFF011JMK/@@download/ENCFF011JMK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF586CEH bigWig signal p-value ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF546IMN, ENCFF772PJM 207818593 ENCODE Processing Pipeline ae310e9c913d9611c156f1f14ca86140 https://www.encodeproject.org/files/ENCFF586CEH/@@download/ENCFF586CEH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF042IHV bigWig signal p-value ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF204TUQ, ENCFF546IMN, ENCFF772PJM 199303760 ENCODE Processing Pipeline 243c3133647ffc233267dcf74ee43cbb https://www.encodeproject.org/files/ENCFF042IHV/@@download/ENCFF042IHV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF755HSD bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF204TUQ, ENCFF772PJM 2656759 ENCODE Processing Pipeline 69f832bd3be8be7034aeea121df7e0d2 https://www.encodeproject.org/files/ENCFF755HSD/@@download/ENCFF755HSD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF286MTX bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF204TUQ, ENCFF546IMN, ENCFF772PJM 1756619 ENCODE Processing Pipeline f72241646af97bb20cbd34b0215fca7a https://www.encodeproject.org/files/ENCFF286MTX/@@download/ENCFF286MTX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF402BGN bigWig fold change over control ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF546IMN, ENCFF772PJM 218594017 ENCODE Processing Pipeline 20524aea3ea0bf0a6ea0ef36694b1629 https://www.encodeproject.org/files/ENCFF402BGN/@@download/ENCFF402BGN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF997BZY bigWig fold change over control ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF204TUQ, ENCFF772PJM 98642048 ENCODE Processing Pipeline 518a214019e26f1d4770df23c85d769d https://www.encodeproject.org/files/ENCFF997BZY/@@download/ENCFF997BZY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF384IZU bigWig fold change over control ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF204TUQ, ENCFF546IMN, ENCFF772PJM 291397438 ENCODE Processing Pipeline ddbd4049e6c83a59e058ab95c6cea482 https://www.encodeproject.org/files/ENCFF384IZU/@@download/ENCFF384IZU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF082DAI bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF546IMN, ENCFF772PJM 2474090 ENCODE Processing Pipeline 1217421d297fbc437dca3d0f29a41e06 https://www.encodeproject.org/files/ENCFF082DAI/@@download/ENCFF082DAI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF102SLH bigBed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF286MTX 3436197 ENCODE Processing Pipeline 10da411ea83b797bd5e4f3dc05e63fa3 https://www.encodeproject.org/files/ENCFF102SLH/@@download/ENCFF102SLH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF975FXR bigBed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF082DAI 5349108 ENCODE Processing Pipeline 0b2e2472cffa0f810867935a8391c739 https://www.encodeproject.org/files/ENCFF975FXR/@@download/ENCFF975FXR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF336QGQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF809CZV 320152 ENCODE Processing Pipeline 757c03f350e8a6367b34e6eef30d7a50 https://www.encodeproject.org/files/ENCFF336QGQ/@@download/ENCFF336QGQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF427YTW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF023ZUW 413060 ENCODE Processing Pipeline 647f6aae3b44674acc3ccc708b5c11c7 https://www.encodeproject.org/files/ENCFF427YTW/@@download/ENCFF427YTW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF809CZV bed narrowPeak conservative idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF082DAI, ENCFF286MTX, ENCFF419RSJ, ENCFF755HSD 162696 ENCODE Processing Pipeline 1be4893c8ac580d221c18ca8fba2d66c https://www.encodeproject.org/files/ENCFF809CZV/@@download/ENCFF809CZV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF023ZUW bed narrowPeak optimal idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF082DAI, ENCFF286MTX, ENCFF419RSJ, ENCFF755HSD 236250 ENCODE Processing Pipeline 32adbc5e9e50c18860ffbb3c15be97b6 https://www.encodeproject.org/files/ENCFF023ZUW/@@download/ENCFF023ZUW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF317QZA bigWig signal p-value ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294HHJ, ENCFF750MIM 207875529 ENCODE Processing Pipeline 68d857a49604a1084b28c05383d511e3 https://www.encodeproject.org/files/ENCFF317QZA/@@download/ENCFF317QZA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF833IGQ bigWig fold change over control ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294HHJ, ENCFF750MIM 215438769 ENCODE Processing Pipeline 4d803385fb55f003c0b1ac4771c53f9a https://www.encodeproject.org/files/ENCFF833IGQ/@@download/ENCFF833IGQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF886WIO bigWig signal p-value ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520WAB, ENCFF750MIM 178178422 ENCODE Processing Pipeline 7a80753acb89b7fea9327312eba9f0c0 https://www.encodeproject.org/files/ENCFF886WIO/@@download/ENCFF886WIO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF621KLV bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294HHJ, ENCFF750MIM 2505082 ENCODE Processing Pipeline ed746289c113d26f59115ce9fd2bf3fc https://www.encodeproject.org/files/ENCFF621KLV/@@download/ENCFF621KLV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF764CZH bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520WAB, ENCFF750MIM 2665976 ENCODE Processing Pipeline 5abea8924974ef06db7224d4c8df8842 https://www.encodeproject.org/files/ENCFF764CZH/@@download/ENCFF764CZH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF837RQB bigWig signal p-value ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF294HHJ, ENCFF520WAB, ENCFF750MIM 199522420 ENCODE Processing Pipeline 7fb36a594e5942c1cf860ef38e27e52c https://www.encodeproject.org/files/ENCFF837RQB/@@download/ENCFF837RQB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF051ITR bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF294HHJ, ENCFF520WAB, ENCFF750MIM 1780886 ENCODE Processing Pipeline 63f8f76fae5914f5db88ef58fa1c7e9c https://www.encodeproject.org/files/ENCFF051ITR/@@download/ENCFF051ITR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF518QUW bigWig fold change over control ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF294HHJ, ENCFF520WAB, ENCFF750MIM 291083130 ENCODE Processing Pipeline 62fc792c325b76af51c5e680fe94b40c https://www.encodeproject.org/files/ENCFF518QUW/@@download/ENCFF518QUW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF325PRT bigWig fold change over control ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520WAB, ENCFF750MIM 97817171 ENCODE Processing Pipeline 63e9edaff1a6719a0c86a4b9cc92c098 https://www.encodeproject.org/files/ENCFF325PRT/@@download/ENCFF325PRT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF538NQS bigBed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF764CZH 5445655 ENCODE Processing Pipeline 4f4fb75346c592dc0232dcf38611ca9f https://www.encodeproject.org/files/ENCFF538NQS/@@download/ENCFF538NQS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF684NTJ bigBed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF621KLV 5389584 ENCODE Processing Pipeline 2408203e9e2a8457a7d692ceef97fbc3 https://www.encodeproject.org/files/ENCFF684NTJ/@@download/ENCFF684NTJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF150ZBF bigBed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF051ITR 4067206 ENCODE Processing Pipeline b4a8c851003358caa735aeb21068593e https://www.encodeproject.org/files/ENCFF150ZBF/@@download/ENCFF150ZBF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF558VPP bed narrowPeak optimal idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF051ITR, ENCFF621KLV, ENCFF764CZH 239761 ENCODE Processing Pipeline 810c09de8b3c3fe318e8643e8c5b7e2a https://www.encodeproject.org/files/ENCFF558VPP/@@download/ENCFF558VPP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF603SNP bed narrowPeak conservative idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF051ITR, ENCFF621KLV, ENCFF764CZH 165286 ENCODE Processing Pipeline 382b28627eeb29f28305c62a58c130af https://www.encodeproject.org/files/ENCFF603SNP/@@download/ENCFF603SNP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF390TWG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF558VPP 515510 ENCODE Processing Pipeline 1a8874754c8dd5b769ea3120857e47a2 https://www.encodeproject.org/files/ENCFF390TWG/@@download/ENCFF390TWG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF007JTI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF603SNP 323810 ENCODE Processing Pipeline da52d32d047df2e2ac9cad7f3d077ae2 https://www.encodeproject.org/files/ENCFF007JTI/@@download/ENCFF007JTI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HOZ bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HPM 723129914 John Stamatoyannopoulos, UW 559ad70363b0066b17d37f5bd7f19e43 https://www.encodeproject.org/files/ENCFF001HOZ/@@download/ENCFF001HOZ.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPA bigBed broadPeak hotspots ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XRL 4476610 John Stamatoyannopoulos, UW c07fbd98f0d5e5fd622fe2c046364462 https://www.encodeproject.org/files/ENCFF001HPA/@@download/ENCFF001HPA.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPB bigBed broadPeak hotspots ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XRM 3040188 John Stamatoyannopoulos, UW a8ef7909e543abb23f72baa6d9a96510 https://www.encodeproject.org/files/ENCFF001HPB/@@download/ENCFF001HPB.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPC bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPL 608592205 John Stamatoyannopoulos, UW 6e35ad78442608300659641adedcaf94 https://www.encodeproject.org/files/ENCFF001HPC/@@download/ENCFF001HPC.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPD bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XRN 1640054 John Stamatoyannopoulos, UW 15465637448b26c7405ddacad4fc9293 https://www.encodeproject.org/files/ENCFF001HPD/@@download/ENCFF001HPD.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPE bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XRO 1082376 John Stamatoyannopoulos, UW 6a57fba82ef439537017c1a554b63000 https://www.encodeproject.org/files/ENCFF001HPE/@@download/ENCFF001HPE.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPG bigWig raw signal ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOZ 121463923 John Stamatoyannopoulos, UW 552457877d89a0480917760d08ec0c22 https://www.encodeproject.org/files/ENCFF001HPG/@@download/ENCFF001HPG.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPH bigWig raw signal ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPC 115245787 John Stamatoyannopoulos, UW a5e94aa90219a5ce5cae44ef02626035 https://www.encodeproject.org/files/ENCFF001HPH/@@download/ENCFF001HPH.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPL fastq reads ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 796891870 John Stamatoyannopoulos, UW ac63745508bc1c0e47b6c392b84e6df5 https://www.encodeproject.org/files/ENCFF001HPL/@@download/ENCFF001HPL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HPU/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001HPM fastq reads ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 1240701275 John Stamatoyannopoulos, UW d65e92ab337eddcf715db20566b3f41b https://www.encodeproject.org/files/ENCFF001HPM/@@download/ENCFF001HPM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HPU/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001XRL bed broadPeak hotspots ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOZ 2436063 John Stamatoyannopoulos, UW 5b38852e3e31acb26aa57835a36aac6b https://www.encodeproject.org/files/ENCFF001XRL/@@download/ENCFF001XRL.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001XRM bed broadPeak hotspots ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPC 2108907 John Stamatoyannopoulos, UW 99905b9543b16b6a1a94b5fa895d7f9f https://www.encodeproject.org/files/ENCFF001XRM/@@download/ENCFF001XRM.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001XRN bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOZ 983398 John Stamatoyannopoulos, UW 91a7ac063cf4a34835f9a8b007904e51 https://www.encodeproject.org/files/ENCFF001XRN/@@download/ENCFF001XRN.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF001XRO bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPC 752910 John Stamatoyannopoulos, UW 486773dda7ef061e739fa0dfe708e4eb https://www.encodeproject.org/files/ENCFF001XRO/@@download/ENCFF001XRO.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF002DDB bed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001HOZ, ENCFF001HPC 1121096 ENCODE Consortium Analysis Working Group 7622c2ed39a4594c2627b39e8f2a5075 https://www.encodeproject.org/files/ENCFF002DDB/@@download/ENCFF002DDB.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF315TDO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DDB 2351899 ENCODE Consortium 612848d0b680132f431e2eb9f6eb3842 https://www.encodeproject.org/files/ENCFF315TDO/@@download/ENCFF315TDO.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF734ZFQ bam unfiltered alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HPL, ENCFF643CGH 865230878 ENCODE Processing Pipeline 4a79d42edd78993056b771ad537e9482 https://www.encodeproject.org/files/ENCFF734ZFQ/@@download/ENCFF734ZFQ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF346OGN bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HPL, ENCFF643CGH 523293717 ENCODE Processing Pipeline ed1b8c9ac594cd80e440a26853856d7d https://www.encodeproject.org/files/ENCFF346OGN/@@download/ENCFF346OGN.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF932CRC bam unfiltered alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HPM, ENCFF643CGH 1273444972 ENCODE Processing Pipeline ec5b02343b67bbf5648bf6e8db6d2142 https://www.encodeproject.org/files/ENCFF932CRC/@@download/ENCFF932CRC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF559BCH bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HPM, ENCFF643CGH 585185519 ENCODE Processing Pipeline 5aaafeef9ef01480c9233609707779ce https://www.encodeproject.org/files/ENCFF559BCH/@@download/ENCFF559BCH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF183NSP bam unfiltered alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HPL, ENCFF807MUK 863454093 ENCODE Processing Pipeline ec4d8270e5e53463573c6da1d2aec20b https://www.encodeproject.org/files/ENCFF183NSP/@@download/ENCFF183NSP.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF427ZOV bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HPL, ENCFF807MUK 523536143 ENCODE Processing Pipeline 3208d98a8b2382717fb023195088cb90 https://www.encodeproject.org/files/ENCFF427ZOV/@@download/ENCFF427ZOV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF444CJR bam unfiltered alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HPM, ENCFF807MUK 1272193521 ENCODE Processing Pipeline 12c1239c3e4c189cddc8c5aa4ab8d28c https://www.encodeproject.org/files/ENCFF444CJR/@@download/ENCFF444CJR.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF268MTM bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HPM, ENCFF807MUK 585481905 ENCODE Processing Pipeline 11cbf6cb2520d4dcf599f8a6f555994c https://www.encodeproject.org/files/ENCFF268MTM/@@download/ENCFF268MTM.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF514QEW bigWig signal p-value ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF163IHR, ENCFF559BCH 297112796 ENCODE Processing Pipeline e97b69f1676062a39a795ce6238b991e https://www.encodeproject.org/files/ENCFF514QEW/@@download/ENCFF514QEW.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF402URE bigWig fold change over control ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF163IHR, ENCFF559BCH 206896121 ENCODE Processing Pipeline 5ed21e84f7f707ea68659f0c62680820 https://www.encodeproject.org/files/ENCFF402URE/@@download/ENCFF402URE.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF669OAR bigWig fold change over control ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF163IHR, ENCFF346OGN 225938543 ENCODE Processing Pipeline ffd3dc90cce59743537423cc6ca943f6 https://www.encodeproject.org/files/ENCFF669OAR/@@download/ENCFF669OAR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF493HJH bed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF214JJE, ENCFF419RSJ, ENCFF826PZY, ENCFF839YLN 878543 ENCODE Processing Pipeline 5d821a780af7f8f55050e670e0de57e3 https://www.encodeproject.org/files/ENCFF493HJH/@@download/ENCFF493HJH.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF407MZO bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF493HJH 1543562 ENCODE Processing Pipeline 0d08316e60bed444ae38f584e32f6631 https://www.encodeproject.org/files/ENCFF407MZO/@@download/ENCFF407MZO.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF376HQR bigWig signal p-value ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF163IHR, ENCFF346OGN 269246290 ENCODE Processing Pipeline 73bf81dac74c38ac3ed4addf36f68544 https://www.encodeproject.org/files/ENCFF376HQR/@@download/ENCFF376HQR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF024RQS bigWig signal p-value ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF163IHR, ENCFF346OGN, ENCFF559BCH 339737235 ENCODE Processing Pipeline 05f2a71b6618300e5f8fb11d39eff584 https://www.encodeproject.org/files/ENCFF024RQS/@@download/ENCFF024RQS.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF587EDB bigWig fold change over control ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF163IHR, ENCFF346OGN, ENCFF559BCH 374965412 ENCODE Processing Pipeline 2c5436bca39ffbd1544a0b6082e29c56 https://www.encodeproject.org/files/ENCFF587EDB/@@download/ENCFF587EDB.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF826PZY bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF163IHR, ENCFF346OGN 4300158 ENCODE Processing Pipeline 42374d414caa6ea24b6e714d64623085 https://www.encodeproject.org/files/ENCFF826PZY/@@download/ENCFF826PZY.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF214JJE bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF163IHR, ENCFF559BCH 3702005 ENCODE Processing Pipeline cb2e8646aab384874b8cbc8832344bb6 https://www.encodeproject.org/files/ENCFF214JJE/@@download/ENCFF214JJE.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF854PNJ bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF214JJE 7430931 ENCODE Processing Pipeline 183dcbc39b1c42204326d14318208316 https://www.encodeproject.org/files/ENCFF854PNJ/@@download/ENCFF854PNJ.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF839YLN bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF163IHR, ENCFF346OGN, ENCFF559BCH 4012866 ENCODE Processing Pipeline 1f4b61c6262c10d76a49e6387430c25a https://www.encodeproject.org/files/ENCFF839YLN/@@download/ENCFF839YLN.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF153WQB bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF839YLN 9768620 ENCODE Processing Pipeline 9448911f8120b851632b7529469bbfd0 https://www.encodeproject.org/files/ENCFF153WQB/@@download/ENCFF153WQB.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF805PSV bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF826PZY 10414713 ENCODE Processing Pipeline 61e11d2cb7f8a0ac29cd928a09857e3e https://www.encodeproject.org/files/ENCFF805PSV/@@download/ENCFF805PSV.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF392FBV bigWig signal p-value ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF268MTM, ENCFF620RYQ 297272979 ENCODE Processing Pipeline 605e9a0bd204c33954d58ecf65a4705d https://www.encodeproject.org/files/ENCFF392FBV/@@download/ENCFF392FBV.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF233OSO bigWig fold change over control ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF268MTM, ENCFF620RYQ 206086809 ENCODE Processing Pipeline 0420b5ec020a27031a1b03d904cacd88 https://www.encodeproject.org/files/ENCFF233OSO/@@download/ENCFF233OSO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF427PIM bigWig signal p-value ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF268MTM, ENCFF427ZOV, ENCFF620RYQ 339882362 ENCODE Processing Pipeline afdfa91622ed45423123caf6aa493d14 https://www.encodeproject.org/files/ENCFF427PIM/@@download/ENCFF427PIM.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF101RHP bigWig fold change over control ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF268MTM, ENCFF427ZOV, ENCFF620RYQ 374223565 ENCODE Processing Pipeline 56bcd16dde8cd83e9a0ede66b91796a8 https://www.encodeproject.org/files/ENCFF101RHP/@@download/ENCFF101RHP.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF108SPI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF288RFS 1565214 ENCODE Processing Pipeline e8de5c15df55956ce198fdc206225482 https://www.encodeproject.org/files/ENCFF108SPI/@@download/ENCFF108SPI.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF142EPQ bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF929WKT 10426058 ENCODE Processing Pipeline 7eb693381c73bc19213acf49287758a4 https://www.encodeproject.org/files/ENCFF142EPQ/@@download/ENCFF142EPQ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF288RFS bed narrowPeak optimal idr thresholded peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF924YJI, ENCFF929WKT, ENCFF938HQH 889632 ENCODE Processing Pipeline 7ce3d71abd0220f4289d7b0aced11dc4 https://www.encodeproject.org/files/ENCFF288RFS/@@download/ENCFF288RFS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF463KXP bigWig signal p-value ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF427ZOV, ENCFF620RYQ 294821910 ENCODE Processing Pipeline 144d0dee7d27c38eb40203d8b87b4bcc https://www.encodeproject.org/files/ENCFF463KXP/@@download/ENCFF463KXP.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF221NCR bigWig fold change over control ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF427ZOV, ENCFF620RYQ 226275268 ENCODE Processing Pipeline a55c370eec8f9c6853967f892d66547a https://www.encodeproject.org/files/ENCFF221NCR/@@download/ENCFF221NCR.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF924YJI bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF268MTM, ENCFF620RYQ 3732065 ENCODE Processing Pipeline ff075a5e7ab0ae978f67ef3324dac57e https://www.encodeproject.org/files/ENCFF924YJI/@@download/ENCFF924YJI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF929WKT bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF427ZOV, ENCFF620RYQ 4315314 ENCODE Processing Pipeline e4577815f1ab2bdb587257ef064d4803 https://www.encodeproject.org/files/ENCFF929WKT/@@download/ENCFF929WKT.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF794QLW bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF924YJI 7485691 ENCODE Processing Pipeline 8ba93cbfd0fe1f17fd6d9e3a2798eabd https://www.encodeproject.org/files/ENCFF794QLW/@@download/ENCFF794QLW.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF641QWN bigBed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF938HQH 9841234 ENCODE Processing Pipeline bd64e12bc005b5f598a0021f56294971 https://www.encodeproject.org/files/ENCFF641QWN/@@download/ENCFF641QWN.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF938HQH bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF268MTM, ENCFF427ZOV, ENCFF620RYQ 4062652 ENCODE Processing Pipeline bab3d7d93eaba37b4816855ef65b0e0b https://www.encodeproject.org/files/ENCFF938HQH/@@download/ENCFF938HQH.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF000QGB bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QGQ 1034304385 Richard Myers, HAIB e2a4864c92b7f58ac49a4435bdcdd634 https://www.encodeproject.org/files/ENCFF000QGB/@@download/ENCFF000QGB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QGC bigBed broadPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001ULD 66537 Richard Myers, HAIB c3242243dbfb6c2a23135d91c694192b https://www.encodeproject.org/files/ENCFF000QGC/@@download/ENCFF000QGC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QGD bigBed broadPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULE 172921 Richard Myers, HAIB 136794fbe5c47545f18fb31c146cc2a6 https://www.encodeproject.org/files/ENCFF000QGD/@@download/ENCFF000QGD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QGE bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QGN 363932617 Richard Myers, HAIB 02a526126c4c7670f80f74f491a67468 https://www.encodeproject.org/files/ENCFF000QGE/@@download/ENCFF000QGE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QGF bigWig raw signal ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 4020754 Richard Myers, HAIB 937a9c711b62943e1218d8051d48ae1c https://www.encodeproject.org/files/ENCFF000QGF/@@download/ENCFF000QGF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000QGH bigWig raw signal ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 4435726 Richard Myers, HAIB a79c0776ca2a0ab099eb0b0f72afdced https://www.encodeproject.org/files/ENCFF000QGH/@@download/ENCFF000QGH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000QGN fastq reads ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 353446396 Richard Myers, HAIB 70b6a0d835efbc73998c417acf047045 https://www.encodeproject.org/files/ENCFF000QGN/@@download/ENCFF000QGN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEZ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QGQ fastq reads ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 947796572 Richard Myers, HAIB 357bbbe57c8b6eecacdf1d4199fc4d03 https://www.encodeproject.org/files/ENCFF000QGQ/@@download/ENCFF000QGQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001ULD bed broadPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 13516 Richard Myers, HAIB e8c341b2125d2fe5ab3407ac204d73a4 https://www.encodeproject.org/files/ENCFF001ULD/@@download/ENCFF001ULD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001ULE bed broadPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 70059 Richard Myers, HAIB 947259a6b1a6f24d9fbfc54720926fd0 https://www.encodeproject.org/files/ENCFF001ULE/@@download/ENCFF001ULE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF882JQN bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGN, ENCFF807MUK 213708414 ENCODE Processing Pipeline 2dbe6ff4702842a1a5052cdcff6f52df https://www.encodeproject.org/files/ENCFF882JQN/@@download/ENCFF882JQN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF122HCH bam unfiltered alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGN, ENCFF807MUK 424775631 ENCODE Processing Pipeline 5a50e611f2235109774c054af8e900a3 https://www.encodeproject.org/files/ENCFF122HCH/@@download/ENCFF122HCH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF798THM bam unfiltered alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QGQ, ENCFF807MUK 1220682488 ENCODE Processing Pipeline 0306fb00a464403a5e8ee39c2875d742 https://www.encodeproject.org/files/ENCFF798THM/@@download/ENCFF798THM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF037BXU bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QGQ, ENCFF807MUK 817437214 ENCODE Processing Pipeline 98ac12c407f364c15953b862f5527a53 https://www.encodeproject.org/files/ENCFF037BXU/@@download/ENCFF037BXU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF447EAV bam unfiltered alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGN, ENCFF643CGH 425480616 ENCODE Processing Pipeline 5d6b527c169a4de225d919ddf187c66c https://www.encodeproject.org/files/ENCFF447EAV/@@download/ENCFF447EAV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF975VMQ bam unfiltered alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QGQ, ENCFF643CGH 1223413566 ENCODE Processing Pipeline 4e8061bf2ceb9457a5d0ada21697a864 https://www.encodeproject.org/files/ENCFF975VMQ/@@download/ENCFF975VMQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF331BZT bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QGQ, ENCFF643CGH 816973410 ENCODE Processing Pipeline ad615c734bfa775212b8b879156d577c https://www.encodeproject.org/files/ENCFF331BZT/@@download/ENCFF331BZT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF584HKJ bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGN, ENCFF643CGH 213561783 ENCODE Processing Pipeline 0df6e10f43a11b0d1fa3fe7ce4420b43 https://www.encodeproject.org/files/ENCFF584HKJ/@@download/ENCFF584HKJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF132KHU bigWig fold change over control ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 147552243 ENCODE Processing Pipeline afcac5cce3799208a62e175ea8d36f56 https://www.encodeproject.org/files/ENCFF132KHU/@@download/ENCFF132KHU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF521MOS bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM 4142355 ENCODE Processing Pipeline 585df9f882884542d2162608818d81f2 https://www.encodeproject.org/files/ENCFF521MOS/@@download/ENCFF521MOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF066ONU bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 1856755 ENCODE Processing Pipeline 14200e538b452e7bd169c4e2b53985d9 https://www.encodeproject.org/files/ENCFF066ONU/@@download/ENCFF066ONU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF159FEQ bigWig signal p-value ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 554208476 ENCODE Processing Pipeline 567849b363345bf98fef590b2a0a6613 https://www.encodeproject.org/files/ENCFF159FEQ/@@download/ENCFF159FEQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF925ZXV bigWig fold change over control ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 524903474 ENCODE Processing Pipeline 3ffc512294f3e569dbbfcb34a0a35285 https://www.encodeproject.org/files/ENCFF925ZXV/@@download/ENCFF925ZXV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF156JZC bigWig signal p-value ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM 460370330 ENCODE Processing Pipeline afd19f0d8a598b0fcea80cc1b952f8b4 https://www.encodeproject.org/files/ENCFF156JZC/@@download/ENCFF156JZC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF532UAI bigWig signal p-value ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 354267903 ENCODE Processing Pipeline b61aa107ff0ae0f60ff9110b582d7776 https://www.encodeproject.org/files/ENCFF532UAI/@@download/ENCFF532UAI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF869HHY bigWig fold change over control ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM 421377279 ENCODE Processing Pipeline b70617e515668541493a75ceb7bea075 https://www.encodeproject.org/files/ENCFF869HHY/@@download/ENCFF869HHY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF738BIG bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 4610777 ENCODE Processing Pipeline 512ab31f7689df6e2e25d6ab153dd82b https://www.encodeproject.org/files/ENCFF738BIG/@@download/ENCFF738BIG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF210ZAD bigBed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF521MOS 10716873 ENCODE Processing Pipeline 31d751ffb046abb54ea787e444aa2951 https://www.encodeproject.org/files/ENCFF210ZAD/@@download/ENCFF210ZAD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF276CVA bigBed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF066ONU 4132751 ENCODE Processing Pipeline 0699f128a11a625327164a5fc1d419d6 https://www.encodeproject.org/files/ENCFF276CVA/@@download/ENCFF276CVA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF077HFR bigBed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF738BIG 11034124 ENCODE Processing Pipeline 773ba2104a8662238ca72551393e40c4 https://www.encodeproject.org/files/ENCFF077HFR/@@download/ENCFF077HFR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF221LXI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF615QOD 109039 ENCODE Processing Pipeline 4a54cbf898c147cc26d86ea66db3392d https://www.encodeproject.org/files/ENCFF221LXI/@@download/ENCFF221LXI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF785HDY bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF033EBX 172518 ENCODE Processing Pipeline ac9527ac2cf07031564ead121ca00188 https://www.encodeproject.org/files/ENCFF785HDY/@@download/ENCFF785HDY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF615QOD bed narrowPeak conservative idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF066ONU, ENCFF521MOS, ENCFF738BIG 36527 ENCODE Processing Pipeline ecaec6d806ebba5fc4d05c9511f6de09 https://www.encodeproject.org/files/ENCFF615QOD/@@download/ENCFF615QOD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF033EBX bed narrowPeak optimal idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF066ONU, ENCFF521MOS, ENCFF738BIG 62476 ENCODE Processing Pipeline 097bf841440b7b7f1ef9cb01097fd511 https://www.encodeproject.org/files/ENCFF033EBX/@@download/ENCFF033EBX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF177MBE bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF584HKJ, ENCFF772PJM, ENCFF982BHL 1853408 ENCODE Processing Pipeline 6802e30d0f702fd8e080e71bed9e6948 https://www.encodeproject.org/files/ENCFF177MBE/@@download/ENCFF177MBE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF089KFY bigBed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF177MBE 4129064 ENCODE Processing Pipeline 1b9593a9849a7df78002795e505fecb3 https://www.encodeproject.org/files/ENCFF089KFY/@@download/ENCFF089KFY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF247LOF bed narrowPeak optimal idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF123WWM, ENCFF177MBE, ENCFF419RSJ, ENCFF714RFQ 60929 ENCODE Processing Pipeline 58e643a89b9cf4aa01de67366da4a9be https://www.encodeproject.org/files/ENCFF247LOF/@@download/ENCFF247LOF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF403VLX bigWig signal p-value ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF331BZT, ENCFF772PJM, ENCFF982BHL 551764967 ENCODE Processing Pipeline 1b0535fb4b9bfcc48a906bf751e3f668 https://www.encodeproject.org/files/ENCFF403VLX/@@download/ENCFF403VLX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF092ZVO bigWig signal p-value ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF584HKJ, ENCFF772PJM, ENCFF982BHL 412493701 ENCODE Processing Pipeline c01677b31526c5faeee58057842f3e97 https://www.encodeproject.org/files/ENCFF092ZVO/@@download/ENCFF092ZVO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF303WVD bigWig fold change over control ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF584HKJ, ENCFF772PJM, ENCFF982BHL 147008602 ENCODE Processing Pipeline 918164b7f04dfd95af08d88bd1379b67 https://www.encodeproject.org/files/ENCFF303WVD/@@download/ENCFF303WVD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF587UWR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF247LOF 141467 ENCODE Processing Pipeline 09fab6d1653b393aa5a5b16ad86c53dc https://www.encodeproject.org/files/ENCFF587UWR/@@download/ENCFF587UWR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF080COA bigWig signal p-value ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331BZT, ENCFF584HKJ, ENCFF772PJM, ENCFF982BHL 523728649 ENCODE Processing Pipeline 5102bff166ec960622a2c1de8cc44c77 https://www.encodeproject.org/files/ENCFF080COA/@@download/ENCFF080COA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF593FWV bed narrowPeak conservative idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF123WWM, ENCFF177MBE, ENCFF419RSJ, ENCFF714RFQ 36439 ENCODE Processing Pipeline c4ec33d07bf8e46483c6d78b023c6dd9 https://www.encodeproject.org/files/ENCFF593FWV/@@download/ENCFF593FWV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF210EHW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593FWV 109388 ENCODE Processing Pipeline d523c073b9620d7c9f8d94c3674cdac0 https://www.encodeproject.org/files/ENCFF210EHW/@@download/ENCFF210EHW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF123WWM bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331BZT, ENCFF584HKJ, ENCFF772PJM, ENCFF982BHL 4599842 ENCODE Processing Pipeline fe2457bee3098b4961af1403df69948d https://www.encodeproject.org/files/ENCFF123WWM/@@download/ENCFF123WWM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF852OMW bigWig fold change over control ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF331BZT, ENCFF772PJM, ENCFF982BHL 421506534 ENCODE Processing Pipeline 3e26319d2086a3e838a7b3c05cf04595 https://www.encodeproject.org/files/ENCFF852OMW/@@download/ENCFF852OMW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF619NSR bigWig fold change over control ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF331BZT, ENCFF584HKJ, ENCFF772PJM, ENCFF982BHL 506357232 ENCODE Processing Pipeline ea7d68a7899e9e7f8f987ca47a7dc931 https://www.encodeproject.org/files/ENCFF619NSR/@@download/ENCFF619NSR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF714RFQ bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF331BZT, ENCFF772PJM, ENCFF982BHL 4138309 ENCODE Processing Pipeline 2fb0653961f0ac954538b731da4319ae https://www.encodeproject.org/files/ENCFF714RFQ/@@download/ENCFF714RFQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF071JUJ bigBed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF714RFQ 10722308 ENCODE Processing Pipeline 5f2ad87465879810dfadf307cb4f67a1 https://www.encodeproject.org/files/ENCFF071JUJ/@@download/ENCFF071JUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF633MBZ bigBed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF123WWM 11022914 ENCODE Processing Pipeline fdd71968f0e4062bcce7575e89b07a46 https://www.encodeproject.org/files/ENCFF633MBZ/@@download/ENCFF633MBZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000XCL bam alignments ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XCO 641722062 Michael Snyder, Stanford ab2617f6907f3b322cb9b4e152c5a122 https://www.encodeproject.org/files/ENCFF000XCL/@@download/ENCFF000XCL.bam hg19 released low read length biological replicates with identical biosample ENCFF000XCM bam alignments ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XCQ 403704812 Michael Snyder, Stanford e33e572aa9d14c4e2234404ab1c6f505 https://www.encodeproject.org/files/ENCFF000XCM/@@download/ENCFF000XCM.bam hg19 released low read length biological replicates with identical biosample ENCFF000XCN bigBed narrowPeak peaks ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VIF 2492302 Michael Snyder, Stanford 0cbc2193457e9958824e2875811bc1eb https://www.encodeproject.org/files/ENCFF000XCN/@@download/ENCFF000XCN.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XCO fastq reads ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1269333052 Michael Snyder, Stanford f6d5c8822f7d7cd15830702cd4961cec https://www.encodeproject.org/files/ENCFF000XCO/@@download/ENCFF000XCO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XCQ fastq reads ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 791144359 Michael Snyder, Stanford 6db95fb50b74ba64e882eeacd0949771 https://www.encodeproject.org/files/ENCFF000XCQ/@@download/ENCFF000XCQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XCS bigWig signal ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 401485407 Michael Snyder, Stanford fb1c8c84bef51504cb7e26f44a0e069d https://www.encodeproject.org/files/ENCFF000XCS/@@download/ENCFF000XCS.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001VIF bed narrowPeak peaks ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 987201 Michael Snyder, Stanford 5068b923103fb32b944cd2ab558dc206 https://www.encodeproject.org/files/ENCFF001VIF/@@download/ENCFF001VIF.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CSF bed narrowPeak optimal idr thresholded peaks ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 394882 ENCODE Consortium Analysis Working Group e7c99d8ef0836c01ae22ce43c8fbe510 https://www.encodeproject.org/files/ENCFF002CSF/@@download/ENCFF002CSF.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF390NJU bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CSF 871259 ENCODE Consortium 6d9a2be0d822532b751b7ef0e7639be7 https://www.encodeproject.org/files/ENCFF390NJU/@@download/ENCFF390NJU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000ARG bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000ARV 484522410 Bradley Bernstein, Broad 881c311f387465059bace19e517bf47c https://www.encodeproject.org/files/ENCFF000ARG/@@download/ENCFF000ARG.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF000ARH bigBed broadPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001SUB 1825957 Bradley Bernstein, Broad 88901f9349bbf52f05456bc7d8858730 https://www.encodeproject.org/files/ENCFF000ARH/@@download/ENCFF000ARH.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF000ARI bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000ARP 945607244 Bradley Bernstein, Broad d53da79ce1f1927b77a938288b758180 https://www.encodeproject.org/files/ENCFF000ARI/@@download/ENCFF000ARI.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF000ARJ bigWig signal ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 626202027 Bradley Bernstein, Broad 9bfe3dff371df0ee25af4f8bff093556 https://www.encodeproject.org/files/ENCFF000ARJ/@@download/ENCFF000ARJ.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from control insufficient read depth, insufficient read depth ENCFF000ARP fastq reads ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 1052264612 Bradley Bernstein, Broad 134e6a28cd92c74bae6976f124d6bca8 https://www.encodeproject.org/files/ENCFF000ARP/@@download/ENCFF000ARP.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000ARO/ released low read length, mild to moderate bottlenecking, control low read depth, low read depth, inconsistent control read length, mixed read lengths control insufficient read depth, insufficient read depth ENCFF000ARV fastq reads ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 51 single-ended 811019691 Bradley Bernstein, Broad bf6d9d1682f4b31ac2304711cfa1e591 https://www.encodeproject.org/files/ENCFF000ARV/@@download/ENCFF000ARV.fastq.gz Illumina Genome Analyzer II /files/ENCFF000ARK/ released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF001SUB bed broadPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1021431 Bradley Bernstein, Broad e626948d9674dc6187dc88445178cff3 https://www.encodeproject.org/files/ENCFF001SUB/@@download/ENCFF001SUB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from control insufficient read depth, insufficient read depth ENCFF002CDP bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1005226 ENCODE Consortium Analysis Working Group 9c53d27a4d8c71629f8c1ebc059a8ff4 https://www.encodeproject.org/files/ENCFF002CDP/@@download/ENCFF002CDP.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths missing derived_from control insufficient read depth, insufficient read depth ENCFF510RVH bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CDP 1943400 ENCODE Consortium d41ce3de62e161ebdc7a0385d796a246 https://www.encodeproject.org/files/ENCFF510RVH/@@download/ENCFF510RVH.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF313NRK bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF643CGH 1365823579 ENCODE Processing Pipeline ed8bca188e179774581f9b6e8ca71091 https://www.encodeproject.org/files/ENCFF313NRK/@@download/ENCFF313NRK.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF406XWF bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF807MUK 1361304018 ENCODE Processing Pipeline af3850e979fd3a39a70eda47ae4f1c35 https://www.encodeproject.org/files/ENCFF406XWF/@@download/ENCFF406XWF.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF994NWU bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF643CGH 674838876 ENCODE Processing Pipeline 14e16f804db4dc14920d597b8d45095d https://www.encodeproject.org/files/ENCFF994NWU/@@download/ENCFF994NWU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF343LTM bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF807MUK 673867842 ENCODE Processing Pipeline ead9079d1e6f5453b309d6c681e3690f https://www.encodeproject.org/files/ENCFF343LTM/@@download/ENCFF343LTM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF598OOE bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF807MUK 752916583 ENCODE Processing Pipeline f446012c1907cdf514fc05fae76193db https://www.encodeproject.org/files/ENCFF598OOE/@@download/ENCFF598OOE.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF389RQC bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF807MUK 285068500 ENCODE Processing Pipeline e623ee04d1664db184cc7db7c2583e26 https://www.encodeproject.org/files/ENCFF389RQC/@@download/ENCFF389RQC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF834CAH bam unfiltered alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF643CGH 755390746 ENCODE Processing Pipeline dc8206eaa75467239e7290ec4e11c313 https://www.encodeproject.org/files/ENCFF834CAH/@@download/ENCFF834CAH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF538VCH bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF643CGH 285968431 ENCODE Processing Pipeline 1c010d4c6c46ecb766d37f9624be0102 https://www.encodeproject.org/files/ENCFF538VCH/@@download/ENCFF538VCH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF838AMT bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 242792142 ENCODE Processing Pipeline 24a3212ee08286fd19f4dc7be5ab9984 https://www.encodeproject.org/files/ENCFF838AMT/@@download/ENCFF838AMT.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF130BJM bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 130805565 ENCODE Processing Pipeline e94519a1c1395dc1f4af9927c15fe0e7 https://www.encodeproject.org/files/ENCFF130BJM/@@download/ENCFF130BJM.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF010MUF bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 129479053 ENCODE Processing Pipeline b5c2d208e5496ea8a3815e6d17814e66 https://www.encodeproject.org/files/ENCFF010MUF/@@download/ENCFF010MUF.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF302KUG bigBed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF536RGD 1110752 ENCODE Processing Pipeline 703ca8ff5c735e0df5a2fa7f6202dd52 https://www.encodeproject.org/files/ENCFF302KUG/@@download/ENCFF302KUG.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF581COS bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 250641594 ENCODE Processing Pipeline 68da9d4ad32b37780265ecb0c61807fa https://www.encodeproject.org/files/ENCFF581COS/@@download/ENCFF581COS.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF356LIU bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF061OYK, ENCFF419RSJ, ENCFF445FMQ, ENCFF933NTR 666122 ENCODE Processing Pipeline bec0a5b3954eadf15bf0e901b863b037 https://www.encodeproject.org/files/ENCFF356LIU/@@download/ENCFF356LIU.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF702ZKH bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 216184883 ENCODE Processing Pipeline b2cd3b33404632371fdebce010bb6692 https://www.encodeproject.org/files/ENCFF702ZKH/@@download/ENCFF702ZKH.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF600AKY bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF061OYK 6217264 ENCODE Processing Pipeline d4956e00d8bd2fba861b72680b75357d https://www.encodeproject.org/files/ENCFF600AKY/@@download/ENCFF600AKY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF194JIB bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF445FMQ 9636154 ENCODE Processing Pipeline 2c7b1ada873cbd76b31c11e6bfb0d9fb https://www.encodeproject.org/files/ENCFF194JIB/@@download/ENCFF194JIB.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF536RGD bed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF061OYK, ENCFF419RSJ, ENCFF445FMQ, ENCFF933NTR 636383 ENCODE Processing Pipeline 9643da0f20e987d52fc4568c640658d6 https://www.encodeproject.org/files/ENCFF536RGD/@@download/ENCFF536RGD.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF061OYK bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP 2585473 ENCODE Processing Pipeline 41baa215ec49aef1e5747b9f33303d33 https://www.encodeproject.org/files/ENCFF061OYK/@@download/ENCFF061OYK.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF933NTR bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 4477240 ENCODE Processing Pipeline 7d8c536acbb4c8108476c047daa42536 https://www.encodeproject.org/files/ENCFF933NTR/@@download/ENCFF933NTR.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF445FMQ bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF873ZWP, ENCFF994NWU 3995400 ENCODE Processing Pipeline ed460a311d46d8509cdf56b16d6bd74e https://www.encodeproject.org/files/ENCFF445FMQ/@@download/ENCFF445FMQ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF182CAX bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF356LIU 1149951 ENCODE Processing Pipeline 113d6bb20eef3a06a9a56c1214e8b72a https://www.encodeproject.org/files/ENCFF182CAX/@@download/ENCFF182CAX.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF279CYY bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF538VCH, ENCFF797ARJ, ENCFF873ZWP, ENCFF994NWU 348454928 ENCODE Processing Pipeline 536e897b5e0c2503e57b58b32864400e https://www.encodeproject.org/files/ENCFF279CYY/@@download/ENCFF279CYY.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF134SJJ bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF933NTR 10655964 ENCODE Processing Pipeline 3940e6a1797c6440ec9acdfd1ab358c8 https://www.encodeproject.org/files/ENCFF134SJJ/@@download/ENCFF134SJJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF952FQV bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 251801891 ENCODE Processing Pipeline 026ff163f785669da2d9d083c4d449fc https://www.encodeproject.org/files/ENCFF952FQV/@@download/ENCFF952FQV.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF218HFH bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 129412412 ENCODE Processing Pipeline 06174df8cd957e9884ee09c6aea04e13 https://www.encodeproject.org/files/ENCFF218HFH/@@download/ENCFF218HFH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF629AAF bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 130375871 ENCODE Processing Pipeline bf2c47f751bcba6761f26e15ab707b05 https://www.encodeproject.org/files/ENCFF629AAF/@@download/ENCFF629AAF.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF797LSC bigWig signal p-value ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 242749079 ENCODE Processing Pipeline 1c772ff1405dbe2a1755c3a0a3268ecc https://www.encodeproject.org/files/ENCFF797LSC/@@download/ENCFF797LSC.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF070TNA bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 215908902 ENCODE Processing Pipeline 4165e8e0d2c484b811ded97cb7226d85 https://www.encodeproject.org/files/ENCFF070TNA/@@download/ENCFF070TNA.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF364OXN bigWig fold change over control ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 346464836 ENCODE Processing Pipeline 3dfec7813d4a7c50befcadac360c0ae8 https://www.encodeproject.org/files/ENCFF364OXN/@@download/ENCFF364OXN.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF706QLS bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 2436987 ENCODE Processing Pipeline 989f9f01a47be649827afbe7613f9e79 https://www.encodeproject.org/files/ENCFF706QLS/@@download/ENCFF706QLS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF934NEI bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 4005719 ENCODE Processing Pipeline 1f1ed3ead872ba5694af582f563d0d81 https://www.encodeproject.org/files/ENCFF934NEI/@@download/ENCFF934NEI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF551KNM bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF232FPZ, ENCFF343LTM, ENCFF389RQC, ENCFF624TPS 4456553 ENCODE Processing Pipeline d7abf752df6d52dac24a492114201c4a https://www.encodeproject.org/files/ENCFF551KNM/@@download/ENCFF551KNM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF147OBX bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF551KNM 10622172 ENCODE Processing Pipeline 684059169cb3bb055ba7a07df6a326e6 https://www.encodeproject.org/files/ENCFF147OBX/@@download/ENCFF147OBX.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF034SYS bigBed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF096AKZ 1097839 ENCODE Processing Pipeline 75eece520c3fdefd227f3f454ea23c90 https://www.encodeproject.org/files/ENCFF034SYS/@@download/ENCFF034SYS.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF516BWL bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF934NEI 9648371 ENCODE Processing Pipeline 2cb0c1c598362f50ffda8926c6a1ca9f https://www.encodeproject.org/files/ENCFF516BWL/@@download/ENCFF516BWL.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF923ZBP bigBed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF833FTF 1133650 ENCODE Processing Pipeline d766bab06f02c6ab9d1b538de2b3ebc1 https://www.encodeproject.org/files/ENCFF923ZBP/@@download/ENCFF923ZBP.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF006BGH bigBed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF706QLS 4908646 ENCODE Processing Pipeline bb66c704fa0546a3715041de04abbdb3 https://www.encodeproject.org/files/ENCFF006BGH/@@download/ENCFF006BGH.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF096AKZ bed narrowPeak conservative idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF551KNM, ENCFF706QLS, ENCFF934NEI 628471 ENCODE Processing Pipeline 2dde1f228dced8e1b51fc5a3d88c87dc https://www.encodeproject.org/files/ENCFF096AKZ/@@download/ENCFF096AKZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF833FTF bed narrowPeak optimal idr thresholded peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF551KNM, ENCFF706QLS, ENCFF934NEI 655789 ENCODE Processing Pipeline 265cfe705263baae508111a4114aab61 https://www.encodeproject.org/files/ENCFF833FTF/@@download/ENCFF833FTF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF000XAH bam alignments ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAR 399772729 Michael Snyder, Stanford 2706f0a93a151faa1e325f63db7ec8e5 https://www.encodeproject.org/files/ENCFF000XAH/@@download/ENCFF000XAH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XAI bam alignments ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAT 459727437 Michael Snyder, Stanford fcdba6478a1b50a4978e3c321e2943b4 https://www.encodeproject.org/files/ENCFF000XAI/@@download/ENCFF000XAI.bam hg19 released low read length biological replicates with identical biosample ENCFF000XAJ bigBed narrowPeak peaks ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHV 1712773 Michael Snyder, Stanford ca6472d0e86e905a68d1903f9a54cc16 https://www.encodeproject.org/files/ENCFF000XAJ/@@download/ENCFF000XAJ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XAM bigWig signal ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 302468671 Michael Snyder, Stanford 18e7cbf043b1b8355f6b6b714e85a061 https://www.encodeproject.org/files/ENCFF000XAM/@@download/ENCFF000XAM.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XAR fastq reads ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 822185260 Michael Snyder, Stanford 3d358d4b65eed85499ce83c59122f138 https://www.encodeproject.org/files/ENCFF000XAR/@@download/ENCFF000XAR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XAT fastq reads ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1199456356 Michael Snyder, Stanford a871fdafa82cb95fad8bc3145041ac34 https://www.encodeproject.org/files/ENCFF000XAT/@@download/ENCFF000XAT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VHV bed narrowPeak peaks ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 615380 Michael Snyder, Stanford 8ea294e3e0247eb8ad6a74620575b946 https://www.encodeproject.org/files/ENCFF001VHV/@@download/ENCFF001VHV.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CRW bed narrowPeak optimal idr thresholded peaks ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 211374 ENCODE Consortium Analysis Working Group db45e389b7cf2fe24e3b9151c2c27b26 https://www.encodeproject.org/files/ENCFF002CRW/@@download/ENCFF002CRW.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF742BRD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRW 557569 ENCODE Consortium 164f911d603da7c5e73322550f73f5ab https://www.encodeproject.org/files/ENCFF742BRD/@@download/ENCFF742BRD.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000RDU bam alignments ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000REC 1107675843 Richard Myers, HAIB 9e202354e176a4afdea4e7475d56aa9a https://www.encodeproject.org/files/ENCFF000RDU/@@download/ENCFF000RDU.bam hg19 released biological replicates with identical biosample ENCFF000RDV bigBed broadPeak peaks ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UQJ 348656 Richard Myers, HAIB 6aec50f7a4b3b7b30b707835f90d627b https://www.encodeproject.org/files/ENCFF000RDV/@@download/ENCFF000RDV.bigBed hg19 released biological replicates with identical biosample ENCFF000RDW bigBed broadPeak peaks ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UQK 419132 Richard Myers, HAIB 9d6c579fd40ddfc26e6e01cbcdd833bf https://www.encodeproject.org/files/ENCFF000RDW/@@download/ENCFF000RDW.bigBed hg19 released biological replicates with identical biosample ENCFF000RDX bam alignments ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REI 1373580972 Richard Myers, HAIB ed173a8c6b65679ed212f4dfbf47a44c https://www.encodeproject.org/files/ENCFF000RDX/@@download/ENCFF000RDX.bam hg19 released biological replicates with identical biosample ENCFF000RDY bigWig raw signal ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 73158651 Richard Myers, HAIB c139972f3399b56e198e84c23e6d6725 https://www.encodeproject.org/files/ENCFF000RDY/@@download/ENCFF000RDY.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RDZ bigWig raw signal ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 218247265 Richard Myers, HAIB f442490d0403cf729deb789ebea7801c https://www.encodeproject.org/files/ENCFF000RDZ/@@download/ENCFF000RDZ.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000REC fastq reads ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1223533689 Richard Myers, HAIB 503cd3bb06a88b77413894955692691b https://www.encodeproject.org/files/ENCFF000REC/@@download/ENCFF000REC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF000REI fastq reads ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1377931106 Richard Myers, HAIB 2f66e28527052a0b0c1f46d10f46a002 https://www.encodeproject.org/files/ENCFF000REI/@@download/ENCFF000REI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF001UQJ bed broadPeak peaks ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 1 179688 Richard Myers, HAIB 1057819788bf9c93aad8fef323fb3fc8 https://www.encodeproject.org/files/ENCFF001UQJ/@@download/ENCFF001UQJ.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UQK bed broadPeak peaks ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 1 237484 Richard Myers, HAIB dc37685c7ca2bf7cdeb90784d2ad3c75 https://www.encodeproject.org/files/ENCFF001UQK/@@download/ENCFF001UQK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001HFV bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HGI 478566182 John Stamatoyannopoulos, UW a28ad148b5d0ba79b1b3f27e7ac4da8d https://www.encodeproject.org/files/ENCFF001HFV/@@download/ENCFF001HFV.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HFW bigBed broadPeak hotspots ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XOV 4332364 John Stamatoyannopoulos, UW f584cfd49905566390e25da79188d985 https://www.encodeproject.org/files/ENCFF001HFW/@@download/ENCFF001HFW.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HFX bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HGJ 559986135 John Stamatoyannopoulos, UW 5d4a514fba1ebc9e337c6ae37961c5a1 https://www.encodeproject.org/files/ENCFF001HFX/@@download/ENCFF001HFX.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HFY bigBed broadPeak hotspots ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XOW 3769397 John Stamatoyannopoulos, UW f122df5affc7507602ec8f82885e81e9 https://www.encodeproject.org/files/ENCFF001HFY/@@download/ENCFF001HFY.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HFZ bigBed broadPeak hotspots ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001XOX 5219792 John Stamatoyannopoulos, UW 3a52cb18431e843a3b3c31cf00bd1767 https://www.encodeproject.org/files/ENCFF001HFZ/@@download/ENCFF001HFZ.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGA bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XOY 1369443 John Stamatoyannopoulos, UW 56dc3f7158490228b146bf789749e424 https://www.encodeproject.org/files/ENCFF001HGA/@@download/ENCFF001HGA.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGB bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XOZ 1051571 John Stamatoyannopoulos, UW cb9a940bcf81d4c63fc15ef6cdd92e0a https://www.encodeproject.org/files/ENCFF001HGB/@@download/ENCFF001HGB.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGC bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001XPA 1599563 John Stamatoyannopoulos, UW 325b43570e394a24ecf143efb95763a1 https://www.encodeproject.org/files/ENCFF001HGC/@@download/ENCFF001HGC.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGD bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001HGK 829652097 John Stamatoyannopoulos, UW 1c60fc9e247a4de303fa818d3989eaa7 https://www.encodeproject.org/files/ENCFF001HGD/@@download/ENCFF001HGD.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGE bigWig raw signal ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HFV 91814379 John Stamatoyannopoulos, UW bf1e8d79495577a881bdf925fdd4aae8 https://www.encodeproject.org/files/ENCFF001HGE/@@download/ENCFF001HGE.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGG bigWig raw signal ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HFX 86431636 John Stamatoyannopoulos, UW 0c3255a4ac9d6f3813444d832f90ac2e https://www.encodeproject.org/files/ENCFF001HGG/@@download/ENCFF001HGG.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGH bigWig raw signal ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001HGD 120664569 John Stamatoyannopoulos, UW 06f54661f5ab55d01e176404b9b7f8b8 https://www.encodeproject.org/files/ENCFF001HGH/@@download/ENCFF001HGH.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGI fastq reads ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 577604967 John Stamatoyannopoulos, UW 641c18ff74f6f39520b6b9c60d7c1822 https://www.encodeproject.org/files/ENCFF001HGI/@@download/ENCFF001HGI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HGV/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGJ fastq reads ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 701434008 John Stamatoyannopoulos, UW c85fd66fafe3da9b11bc2437941643f2 https://www.encodeproject.org/files/ENCFF001HGJ/@@download/ENCFF001HGJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HGV/ archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001HGK fastq reads ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 1 36 single-ended 993869748 John Stamatoyannopoulos, UW 743a465ba36f1ee54da937839b561afa https://www.encodeproject.org/files/ENCFF001HGK/@@download/ENCFF001HGK.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HGV/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001XOV bed broadPeak hotspots ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HFV 2381879 John Stamatoyannopoulos, UW e14667426849ee1d54f1dfbc19d52bfb https://www.encodeproject.org/files/ENCFF001XOV/@@download/ENCFF001XOV.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001XOW bed broadPeak hotspots ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HFX 2679512 John Stamatoyannopoulos, UW 830d01d71ffe7aea5d010dbb5c90bc60 https://www.encodeproject.org/files/ENCFF001XOW/@@download/ENCFF001XOW.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001XOX bed broadPeak hotspots ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001HGD 2998974 John Stamatoyannopoulos, UW 15da888a8ec19b522e2357b0d926bbfe https://www.encodeproject.org/files/ENCFF001XOX/@@download/ENCFF001XOX.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001XOY bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HFV 793103 John Stamatoyannopoulos, UW 70e7f4f6dee47ffba8ecb3def8015f2f https://www.encodeproject.org/files/ENCFF001XOY/@@download/ENCFF001XOY.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001XOZ bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HFX 745778 John Stamatoyannopoulos, UW cdca511167e91115ca5b003bf223e53c https://www.encodeproject.org/files/ENCFF001XOZ/@@download/ENCFF001XOZ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF001XPA bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF001HGD 961610 John Stamatoyannopoulos, UW 639ab4b4fe0dbf363bb30df4ee804315 https://www.encodeproject.org/files/ENCFF001XPA/@@download/ENCFF001XPA.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF002DCJ bed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2, 3 ENCFF001HFV, ENCFF001HFX, ENCFF001HGD 1028403 ENCODE Consortium Analysis Working Group 48b1254a59a376a9f198227e6e12d5c4 https://www.encodeproject.org/files/ENCFF002DCJ/@@download/ENCFF002DCJ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF683MZM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2, 3 ENCFF002DCJ 2133145 ENCODE Consortium 42c19903d47260310c12a4485ae99ac7 https://www.encodeproject.org/files/ENCFF683MZM/@@download/ENCFF683MZM.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF636PUW bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HGI, ENCFF643CGH 423482031 ENCODE Processing Pipeline cdd5dde846d08cb2d73a005b9503ba76 https://www.encodeproject.org/files/ENCFF636PUW/@@download/ENCFF636PUW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF122ARC bam unfiltered alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HGI, ENCFF643CGH 647955197 ENCODE Processing Pipeline 750172f63e0e2ef8bb185983175f0adc https://www.encodeproject.org/files/ENCFF122ARC/@@download/ENCFF122ARC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF305LVH bam unfiltered alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HGJ, ENCFF643CGH 760392186 ENCODE Processing Pipeline 669128d0bd36db865a6bfd5285010f59 https://www.encodeproject.org/files/ENCFF305LVH/@@download/ENCFF305LVH.bam GRCh38 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF579PQH bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HGJ, ENCFF643CGH 338297825 ENCODE Processing Pipeline 8c442984ab0a65f02b01254937120519 https://www.encodeproject.org/files/ENCFF579PQH/@@download/ENCFF579PQH.bam GRCh38 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF877MTF bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 36 ENCFF001HGK, ENCFF643CGH 635715326 ENCODE Processing Pipeline 3314eb02da0dfc98b49ed8e58597eef5 https://www.encodeproject.org/files/ENCFF877MTF/@@download/ENCFF877MTF.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF481AGA bam unfiltered alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 36 ENCFF001HGK, ENCFF643CGH 1084430241 ENCODE Processing Pipeline 355e17d50cdf4c60afa2c2476edddf0e https://www.encodeproject.org/files/ENCFF481AGA/@@download/ENCFF481AGA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF122AGB bam unfiltered alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HGJ, ENCFF807MUK 758811326 ENCODE Processing Pipeline acb242a7fa04133d85fe66159133b8fb https://www.encodeproject.org/files/ENCFF122AGB/@@download/ENCFF122AGB.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF935ICF bam unfiltered alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HGI, ENCFF807MUK 648024516 ENCODE Processing Pipeline 3c3f80eac6b8bc5db69c4717a73e988e https://www.encodeproject.org/files/ENCFF935ICF/@@download/ENCFF935ICF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF771YZF bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HGJ, ENCFF807MUK 335206915 ENCODE Processing Pipeline 2fd1beceb08aa73cd150fdb6ec931810 https://www.encodeproject.org/files/ENCFF771YZF/@@download/ENCFF771YZF.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF471JZR bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HGI, ENCFF807MUK 418740844 ENCODE Processing Pipeline ee0815514819f5148c9c79fd42dcfa4e https://www.encodeproject.org/files/ENCFF471JZR/@@download/ENCFF471JZR.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF154TVB bam unfiltered alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 36 ENCFF001HGK, ENCFF807MUK 1084016038 ENCODE Processing Pipeline 4b9b587a2ec3c9ca084c0f5570cc2507 https://www.encodeproject.org/files/ENCFF154TVB/@@download/ENCFF154TVB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF325SIY bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 36 ENCFF001HGK, ENCFF807MUK 630654608 ENCODE Processing Pipeline 2b3f4796ea0534629b0eeab974fdfe9a https://www.encodeproject.org/files/ENCFF325SIY/@@download/ENCFF325SIY.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF645ZEQ bigWig signal p-value ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF471JZR, ENCFF968YYG 247617856 ENCODE Processing Pipeline 3198a1c67f55f3a7b34ee8888faadb34 https://www.encodeproject.org/files/ENCFF645ZEQ/@@download/ENCFF645ZEQ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF740WFL bigWig fold change over control ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF471JZR, ENCFF968YYG 150384997 ENCODE Processing Pipeline 17e35641b8d6e0c69f0f181e106230e3 https://www.encodeproject.org/files/ENCFF740WFL/@@download/ENCFF740WFL.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF520LUW bigWig signal p-value ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF325SIY, ENCFF471JZR, ENCFF968YYG 316332200 ENCODE Processing Pipeline 638a0b712d589557ea772dffd218b8b8 https://www.encodeproject.org/files/ENCFF520LUW/@@download/ENCFF520LUW.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF789LNX bigWig fold change over control ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF636PUW 150545257 ENCODE Processing Pipeline 9f6b59692787b432de17935a20289d3e https://www.encodeproject.org/files/ENCFF789LNX/@@download/ENCFF789LNX.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF679EVJ bigWig signal p-value ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF877MTF 297225375 ENCODE Processing Pipeline 4633133a70864ebbd5e653e255223a37 https://www.encodeproject.org/files/ENCFF679EVJ/@@download/ENCFF679EVJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF380UJY bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF471JZR, ENCFF968YYG 2610991 ENCODE Processing Pipeline 7c3b8151075c83a5570662febe59cd2a https://www.encodeproject.org/files/ENCFF380UJY/@@download/ENCFF380UJY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF284KRE bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF380UJY 5384737 ENCODE Processing Pipeline dc32e70f2328036405f2ad4f931c69d3 https://www.encodeproject.org/files/ENCFF284KRE/@@download/ENCFF284KRE.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF439BVQ bigWig signal p-value ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF325SIY, ENCFF968YYG 298399861 ENCODE Processing Pipeline 336dc032688c1a97aa933703d9d2a7fb https://www.encodeproject.org/files/ENCFF439BVQ/@@download/ENCFF439BVQ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF825PBM bigWig signal p-value ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF636PUW 285493636 ENCODE Processing Pipeline d3c1f07a14e6aa8ddd691ceebfc66eb7 https://www.encodeproject.org/files/ENCFF825PBM/@@download/ENCFF825PBM.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF661LOO bigWig fold change over control ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF325SIY, ENCFF968YYG 231443218 ENCODE Processing Pipeline cf62aab4d500f80d94e395d1245b9279 https://www.encodeproject.org/files/ENCFF661LOO/@@download/ENCFF661LOO.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF887COR bigWig fold change over control ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF877MTF 230692673 ENCODE Processing Pipeline 2660f244255a77077a07dc2e8f577205 https://www.encodeproject.org/files/ENCFF887COR/@@download/ENCFF887COR.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF489APG bigWig fold change over control ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF636PUW, ENCFF877MTF 337699428 ENCODE Processing Pipeline f4fb82584c954ef0504b4d2205145fdc https://www.encodeproject.org/files/ENCFF489APG/@@download/ENCFF489APG.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF923XLF bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF832UKT 1384787 ENCODE Processing Pipeline 294d1838f50081fa61f356a4b10d6d9f https://www.encodeproject.org/files/ENCFF923XLF/@@download/ENCFF923XLF.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF247DGH bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF325SIY, ENCFF471JZR, ENCFF968YYG 4611335 ENCODE Processing Pipeline ec62fa1042e06d856cf78ea5cdd8b085 https://www.encodeproject.org/files/ENCFF247DGH/@@download/ENCFF247DGH.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF854KRK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF295AWO 1416734 ENCODE Processing Pipeline 751c5e949e8ef83c6a8fd51b74d223b3 https://www.encodeproject.org/files/ENCFF854KRK/@@download/ENCFF854KRK.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF462FSG bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF636PUW 2716822 ENCODE Processing Pipeline c44cd05154805143215319cd3adea4a1 https://www.encodeproject.org/files/ENCFF462FSG/@@download/ENCFF462FSG.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF716XXF bigWig fold change over control ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF325SIY, ENCFF471JZR, ENCFF968YYG 337936716 ENCODE Processing Pipeline 8a803fd618ace6d85fcd9021fc8dc8f8 https://www.encodeproject.org/files/ENCFF716XXF/@@download/ENCFF716XXF.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF212BFJ bigWig signal p-value ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF636PUW, ENCFF877MTF 315139900 ENCODE Processing Pipeline dc4ebb3d1bb807f8cd0ca62e972a7275 https://www.encodeproject.org/files/ENCFF212BFJ/@@download/ENCFF212BFJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF728WXF bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF325SIY, ENCFF968YYG 4326936 ENCODE Processing Pipeline 6b0caa81a48d1b864b8eff0b0fb83cdd https://www.encodeproject.org/files/ENCFF728WXF/@@download/ENCFF728WXF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF670FPO bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF728WXF 10361600 ENCODE Processing Pipeline 1a66d413e30adaae0bbbc135a62664cc https://www.encodeproject.org/files/ENCFF670FPO/@@download/ENCFF670FPO.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF950AKK bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF106MKA 11051967 ENCODE Processing Pipeline a4e8506f6dd2c201095d043ef4700110 https://www.encodeproject.org/files/ENCFF950AKK/@@download/ENCFF950AKK.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF333FCO bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF247DGH 10890837 ENCODE Processing Pipeline 4675355ac556f1ab6994185fb404b2e3 https://www.encodeproject.org/files/ENCFF333FCO/@@download/ENCFF333FCO.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF528NSP bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF462FSG 6709934 ENCODE Processing Pipeline 542b254f9f56b93e68bb2546b883b206 https://www.encodeproject.org/files/ENCFF528NSP/@@download/ENCFF528NSP.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF832UKT bed narrowPeak conservative idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF001TDO, ENCFF247DGH, ENCFF380UJY, ENCFF728WXF 791830 ENCODE Processing Pipeline cf807e0ab23798d46f390e7bb573e71f https://www.encodeproject.org/files/ENCFF832UKT/@@download/ENCFF832UKT.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF345DET bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF877MTF 4502468 ENCODE Processing Pipeline bf3af4aa9eaf4809740ae330405c7465 https://www.encodeproject.org/files/ENCFF345DET/@@download/ENCFF345DET.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF295AWO bed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF001TDO, ENCFF247DGH, ENCFF380UJY, ENCFF728WXF 816014 ENCODE Processing Pipeline 5a6de8426a7aa0847344dedf53b3ab41 https://www.encodeproject.org/files/ENCFF295AWO/@@download/ENCFF295AWO.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF106MKA bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF636PUW, ENCFF877MTF 4739887 ENCODE Processing Pipeline ce7ece5b775647cef45b6ee09650f480 https://www.encodeproject.org/files/ENCFF106MKA/@@download/ENCFF106MKA.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF180XLC bigBed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 ENCFF345DET 10588029 ENCODE Processing Pipeline ad6971bd1e9ce99b117574997d6ee769 https://www.encodeproject.org/files/ENCFF180XLC/@@download/ENCFF180XLC.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF116XHX bed narrowPeak conservative idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF106MKA, ENCFF345DET, ENCFF419RSJ, ENCFF462FSG 840534 ENCODE Processing Pipeline abe378b2f9d9796261c4826e81bd19f4 https://www.encodeproject.org/files/ENCFF116XHX/@@download/ENCFF116XHX.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF806RAB bigBed narrowPeak conservative idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF116XHX 1459667 ENCODE Processing Pipeline 77163064341362c1867e8eb25bf6b580 https://www.encodeproject.org/files/ENCFF806RAB/@@download/ENCFF806RAB.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF913EEI bed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF106MKA, ENCFF345DET, ENCFF419RSJ, ENCFF462FSG 867803 ENCODE Processing Pipeline 53bbcae4d39fc92941152e255652e335 https://www.encodeproject.org/files/ENCFF913EEI/@@download/ENCFF913EEI.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF268LMT bigBed narrowPeak optimal idr thresholded peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 3 ENCFF913EEI 1496246 ENCODE Processing Pipeline 197cd73df073ff169d8d9c80a24a405f https://www.encodeproject.org/files/ENCFF268LMT/@@download/ENCFF268LMT.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF000AZV bam alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000BAG 1320661271 Bradley Bernstein, Broad c0cb5f1fa0bf5b8d36d316e85e4175eb https://www.encodeproject.org/files/ENCFF000AZV/@@download/ENCFF000AZV.bam hg19 archived low read length, inconsistent platforms ENCFF000AZW bigBed broadPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001SVP 646048 Bradley Bernstein, Broad c30b2f927d46458d41e6a43d96bc0387 https://www.encodeproject.org/files/ENCFF000AZW/@@download/ENCFF000AZW.bigBed hg19 archived low read length, inconsistent platforms ENCFF000AZZ bigWig signal ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZV 459641480 Bradley Bernstein, Broad 2060524c6b069e55cf99d335e17dd4d5 https://www.encodeproject.org/files/ENCFF000AZZ/@@download/ENCFF000AZZ.bigWig hg19 archived low read length, inconsistent platforms ENCFF000BAG fastq reads ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1465508918 Bradley Bernstein, Broad 548af0f09ac601f612d643522819df4a https://www.encodeproject.org/files/ENCFF000BAG/@@download/ENCFF000BAG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, inconsistent platforms ENCFF001SVP bed broadPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZV 382335 Bradley Bernstein, Broad 78c59de1e48c35f20fc673812f1b61df https://www.encodeproject.org/files/ENCFF001SVP/@@download/ENCFF001SVP.bed.gz hg19 archived low read length, inconsistent platforms ENCFF020GML bam alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BAG, ENCFF807MUK 1084241534 ENCODE Processing Pipeline c9ecf70582d9abd3a32ed85721475a89 https://www.encodeproject.org/files/ENCFF020GML/@@download/ENCFF020GML.bam hg19 released low read length, inconsistent platforms ENCFF483SON bam unfiltered alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BAG, ENCFF807MUK 1881991750 ENCODE Processing Pipeline 5f57fbe75ef44b3b53cef8fa9435ddb6 https://www.encodeproject.org/files/ENCFF483SON/@@download/ENCFF483SON.bam hg19 released low read length, inconsistent platforms ENCFF173DFX bam alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BAG, ENCFF643CGH 1083836834 ENCODE Processing Pipeline 964e5565ac53830123e1058c0ca68a21 https://www.encodeproject.org/files/ENCFF173DFX/@@download/ENCFF173DFX.bam GRCh38 released low read length, inconsistent platforms ENCFF169UIL bam unfiltered alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BAG, ENCFF643CGH 1890695441 ENCODE Processing Pipeline 46d03b99dca23f34d6e42c5e800379b5 https://www.encodeproject.org/files/ENCFF169UIL/@@download/ENCFF169UIL.bam GRCh38 released low read length, inconsistent platforms ENCFF907RSO bed narrowPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF173DFX 4432192 ENCODE Processing Pipeline 3f7f7d3fe6900da40385a32ac10b906b https://www.encodeproject.org/files/ENCFF907RSO/@@download/ENCFF907RSO.bed.gz GRCh38 released low read length, inconsistent platforms ENCFF348GFK bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF539KSF 91647 ENCODE Processing Pipeline 4bd04ad4521174440cde60f24c29562c https://www.encodeproject.org/files/ENCFF348GFK/@@download/ENCFF348GFK.bigBed GRCh38 released low read length, inconsistent platforms ENCFF670WGX bed narrowPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF020GML, ENCFF727XHW 4556919 ENCODE Processing Pipeline d2b54ef10b0236562a30dc28ba139a0f https://www.encodeproject.org/files/ENCFF670WGX/@@download/ENCFF670WGX.bed.gz hg19 released low read length, inconsistent platforms ENCFF755FMF bigWig signal p-value ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF173DFX 521346507 ENCODE Processing Pipeline f30e701bc58e41f51b1818b857329da0 https://www.encodeproject.org/files/ENCFF755FMF/@@download/ENCFF755FMF.bigWig GRCh38 released low read length, inconsistent platforms ENCFF464OHI bigBed narrowPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF907RSO 11145682 ENCODE Processing Pipeline 215d76c34816355adf718e83d5c432f2 https://www.encodeproject.org/files/ENCFF464OHI/@@download/ENCFF464OHI.bigBed GRCh38 released low read length, inconsistent platforms ENCFF853EIO bigWig fold change over control ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF020GML, ENCFF727XHW 439179256 ENCODE Processing Pipeline b7a5335ec915c6d5777c10016308102e https://www.encodeproject.org/files/ENCFF853EIO/@@download/ENCFF853EIO.bigWig hg19 released low read length, inconsistent platforms ENCFF910RWO bigBed narrowPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF670WGX 11183610 ENCODE Processing Pipeline d8044af817b5022918f203060c537cd6 https://www.encodeproject.org/files/ENCFF910RWO/@@download/ENCFF910RWO.bigBed hg19 released low read length, inconsistent platforms ENCFF540NEO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF719RAM 92223 ENCODE Processing Pipeline 86f33a9c32e7bbc44669f5e83218fe1e https://www.encodeproject.org/files/ENCFF540NEO/@@download/ENCFF540NEO.bigBed hg19 released low read length, inconsistent platforms ENCFF822ZVD bigWig fold change over control ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF173DFX 434957797 ENCODE Processing Pipeline e9e54c09f4950b1eba99fb550e148d20 https://www.encodeproject.org/files/ENCFF822ZVD/@@download/ENCFF822ZVD.bigWig GRCh38 released low read length, inconsistent platforms ENCFF539KSF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF907RSO 8015 ENCODE Processing Pipeline 83ddcd9ae73ee0b8f69a41280f6866df https://www.encodeproject.org/files/ENCFF539KSF/@@download/ENCFF539KSF.bed.gz GRCh38 released low read length, inconsistent platforms ENCFF523VNL bigWig signal p-value ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF020GML, ENCFF727XHW 587986622 ENCODE Processing Pipeline 45b0cc42b2b06769700bb27c67543c42 https://www.encodeproject.org/files/ENCFF523VNL/@@download/ENCFF523VNL.bigWig hg19 released low read length, inconsistent platforms ENCFF719RAM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF670WGX 8062 ENCODE Processing Pipeline ba4496d70e42761df5913d52100cfcac https://www.encodeproject.org/files/ENCFF719RAM/@@download/ENCFF719RAM.bed.gz hg19 released low read length, inconsistent platforms ENCFF000WVJ bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WVX 289588762 Peggy Farnham, USC 045efb5afcc5e94222e432aaa5d4a137 https://www.encodeproject.org/files/ENCFF000WVJ/@@download/ENCFF000WVJ.bam hg19 archived borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WVK bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WVS 363743798 Peggy Farnham, USC f5b71d9468f7ac7c7f65b1d1ce9cd229 https://www.encodeproject.org/files/ENCFF000WVK/@@download/ENCFF000WVK.bam hg19 archived borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WVL bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHE 360507 Peggy Farnham, USC d23a57ce27b2b3ca38cd1701360de18f https://www.encodeproject.org/files/ENCFF000WVL/@@download/ENCFF000WVL.bigBed hg19 archived borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WVM bigWig signal ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 417900357 Peggy Farnham, USC ce9fef20b5b8c97eb8b63a49a767a989 https://www.encodeproject.org/files/ENCFF000WVM/@@download/ENCFF000WVM.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000WVS fastq reads ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 604873914 Peggy Farnham, USC c4a7bebb30c1ecbe883740f3648c7743 https://www.encodeproject.org/files/ENCFF000WVS/@@download/ENCFF000WVS.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released borderline replicate concordance, low read depth, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000WVX fastq reads ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 741022200 Peggy Farnham, USC fd2b6897c5d01d6ef9c254b3a1b456bd https://www.encodeproject.org/files/ENCFF000WVX/@@download/ENCFF000WVX.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released borderline replicate concordance, low read depth, inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VHE bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 124835 Peggy Farnham, USC ccbde07ff00c27f89b6d0f3d1abbc27b https://www.encodeproject.org/files/ENCFF001VHE/@@download/ENCFF001VHE.bed.gz hg19 archived borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CRG bed narrowPeak optimal idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 121074 ENCODE Consortium Analysis Working Group 0c6b969de303af1a6f5dbe057e9aaacc https://www.encodeproject.org/files/ENCFF002CRG/@@download/ENCFF002CRG.bed.gz hg19 archived borderline replicate concordance, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF438ZHK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRG 350526 ENCODE Consortium 103cbd06cae3a79cdd5a6c41bfc50c4a https://www.encodeproject.org/files/ENCFF438ZHK/@@download/ENCFF438ZHK.bigBed hg19 archived borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF198FWS bam unfiltered alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WVS, ENCFF807MUK 741615146 ENCODE Processing Pipeline fc69127da88f84a36e7f900eefb1f302 https://www.encodeproject.org/files/ENCFF198FWS/@@download/ENCFF198FWS.bam hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF372FTC bam unfiltered alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WVS, ENCFF643CGH 746283184 ENCODE Processing Pipeline 5ba772da627358022b5ff4230ff7778f https://www.encodeproject.org/files/ENCFF372FTC/@@download/ENCFF372FTC.bam GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF129DSX bam unfiltered alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WVX, ENCFF643CGH 809045662 ENCODE Processing Pipeline e540b6aadfbe0ab62a8b24bd38a6f2c3 https://www.encodeproject.org/files/ENCFF129DSX/@@download/ENCFF129DSX.bam GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF880PHX bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WVS, ENCFF643CGH 425699962 ENCODE Processing Pipeline 790b61dcceee2ff47a44356e394e3ac5 https://www.encodeproject.org/files/ENCFF880PHX/@@download/ENCFF880PHX.bam GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF295PYU bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WVS, ENCFF807MUK 425740990 ENCODE Processing Pipeline 10626129dbf1071decb2b204b39f764a https://www.encodeproject.org/files/ENCFF295PYU/@@download/ENCFF295PYU.bam hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF382RYW bam unfiltered alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WVX, ENCFF807MUK 806805409 ENCODE Processing Pipeline f50ce2a58ed223c64e89d1ea24c7d1c7 https://www.encodeproject.org/files/ENCFF382RYW/@@download/ENCFF382RYW.bam hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF714YJQ bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WVX, ENCFF807MUK 318860483 ENCODE Processing Pipeline 16baddc8a923bd015666cf242879107f https://www.encodeproject.org/files/ENCFF714YJQ/@@download/ENCFF714YJQ.bam hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF802DHG bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WVX, ENCFF643CGH 318785452 ENCODE Processing Pipeline 7a3d5e8e271c36e8ee682cb921a9ee6b https://www.encodeproject.org/files/ENCFF802DHG/@@download/ENCFF802DHG.bam GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF292DPT bigWig signal p-value ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295PYU, ENCFF509ANO 474398369 ENCODE Processing Pipeline 4e720bbbd0264278173f7e7fa679c075 https://www.encodeproject.org/files/ENCFF292DPT/@@download/ENCFF292DPT.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF518MGP bigWig fold change over control ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295PYU, ENCFF509ANO, ENCFF714YJQ 430506969 ENCODE Processing Pipeline 8997badaddc38ee2d3fc4e04cea22d9a https://www.encodeproject.org/files/ENCFF518MGP/@@download/ENCFF518MGP.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF057PKE bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF380NLL 6751852 ENCODE Processing Pipeline ef238b7fbd1b2fd9a12f5544c6b6af68 https://www.encodeproject.org/files/ENCFF057PKE/@@download/ENCFF057PKE.bigBed hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF062SBW bed narrowPeak optimal idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF380NLL, ENCFF651DQM, ENCFF940PJA 76539 ENCODE Processing Pipeline 0ceda548faa288b705b6a4c1090317b6 https://www.encodeproject.org/files/ENCFF062SBW/@@download/ENCFF062SBW.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF652TAQ bigWig fold change over control ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF802DHG 234347703 ENCODE Processing Pipeline dba9fdeb837fb60bff1234b366b50414 https://www.encodeproject.org/files/ENCFF652TAQ/@@download/ENCFF652TAQ.bigWig GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF818DXA bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF559ZZZ, ENCFF802DHG, ENCFF880PHX 4916222 ENCODE Processing Pipeline c403ab9f09eb6305ddad796bdede6dcc https://www.encodeproject.org/files/ENCFF818DXA/@@download/ENCFF818DXA.bed.gz GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF789VJA bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF818DXA 10980099 ENCODE Processing Pipeline 91c66ec92650658734d81f74de845e21 https://www.encodeproject.org/files/ENCFF789VJA/@@download/ENCFF789VJA.bigBed GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF389SPE bed narrowPeak conservative idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF316ZPF, ENCFF419RSJ, ENCFF726QVS, ENCFF818DXA 61217 ENCODE Processing Pipeline 1419ff15e4593df5c86f47cc9cb6f2e4 https://www.encodeproject.org/files/ENCFF389SPE/@@download/ENCFF389SPE.bed.gz GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF209GJJ bigWig fold change over control ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295PYU, ENCFF509ANO 264975935 ENCODE Processing Pipeline 345472dd89da7a04329f13c43abddf16 https://www.encodeproject.org/files/ENCFF209GJJ/@@download/ENCFF209GJJ.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF247TWR bigWig signal p-value ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF802DHG 384530348 ENCODE Processing Pipeline e30f488c860a70c066efb8e34725f6d4 https://www.encodeproject.org/files/ENCFF247TWR/@@download/ENCFF247TWR.bigWig GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF316ZPF bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF559ZZZ, ENCFF880PHX 4531090 ENCODE Processing Pipeline 1f22f317f2a3361312e3c7db9592b4e6 https://www.encodeproject.org/files/ENCFF316ZPF/@@download/ENCFF316ZPF.bed.gz GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF269TEC bigWig signal p-value ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF714YJQ 385099029 ENCODE Processing Pipeline 7b73dd2a8b7b16926d3943de1edebf09 https://www.encodeproject.org/files/ENCFF269TEC/@@download/ENCFF269TEC.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF978ZWD bigWig signal p-value ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295PYU, ENCFF509ANO, ENCFF714YJQ 544768813 ENCODE Processing Pipeline f425acb65a1a2b8832a4867e18813713 https://www.encodeproject.org/files/ENCFF978ZWD/@@download/ENCFF978ZWD.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF404RNW bigWig fold change over control ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF714YJQ 233362902 ENCODE Processing Pipeline 004dd605206088e51bce999f158321a2 https://www.encodeproject.org/files/ENCFF404RNW/@@download/ENCFF404RNW.bigWig hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF940PJA bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295PYU, ENCFF509ANO 4523991 ENCODE Processing Pipeline 7c7f44776efc18b3cd0702090a53d0f0 https://www.encodeproject.org/files/ENCFF940PJA/@@download/ENCFF940PJA.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF380NLL bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF714YJQ 3095052 ENCODE Processing Pipeline e9565e54222ac649fc228c1d6c19bc85 https://www.encodeproject.org/files/ENCFF380NLL/@@download/ENCFF380NLL.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF492FGR bed narrowPeak conservative idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF380NLL, ENCFF651DQM, ENCFF940PJA 62704 ENCODE Processing Pipeline f98594bec5139cc110a661e851b9a24f https://www.encodeproject.org/files/ENCFF492FGR/@@download/ENCFF492FGR.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF552BOU bigWig signal p-value ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF559ZZZ, ENCFF802DHG, ENCFF880PHX 489079053 ENCODE Processing Pipeline fd5a29e4229d970045f137a7b25f8fc6 https://www.encodeproject.org/files/ENCFF552BOU/@@download/ENCFF552BOU.bigWig GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF726QVS bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF559ZZZ, ENCFF802DHG 3094141 ENCODE Processing Pipeline ba6c6ba1d67c41238d57e00bdb05fe30 https://www.encodeproject.org/files/ENCFF726QVS/@@download/ENCFF726QVS.bed.gz GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF444RJB bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF316ZPF 10642618 ENCODE Processing Pipeline 9b78ed8a783c4f45bca3396d4210ce92 https://www.encodeproject.org/files/ENCFF444RJB/@@download/ENCFF444RJB.bigBed GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF938PCI bed narrowPeak optimal idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF316ZPF, ENCFF419RSJ, ENCFF726QVS, ENCFF818DXA 78387 ENCODE Processing Pipeline ad21632c1b801140f11f879c8dd722a4 https://www.encodeproject.org/files/ENCFF938PCI/@@download/ENCFF938PCI.bed.gz GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF651DQM bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF295PYU, ENCFF509ANO, ENCFF714YJQ 4960890 ENCODE Processing Pipeline 3c6cf7f0530bb606e4bc0801545e7936 https://www.encodeproject.org/files/ENCFF651DQM/@@download/ENCFF651DQM.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF329OBF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF062SBW 232666 ENCODE Processing Pipeline feb2ee071e1a1f38cd66f7f98d3ac9ca https://www.encodeproject.org/files/ENCFF329OBF/@@download/ENCFF329OBF.bigBed hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF478JPP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF389SPE 201869 ENCODE Processing Pipeline 71021ef90a8d3f0f3b9f4e3d5847ba69 https://www.encodeproject.org/files/ENCFF478JPP/@@download/ENCFF478JPP.bigBed GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF095DSF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF938PCI 239956 ENCODE Processing Pipeline e8ff8b7e953a934104a3da2336087c60 https://www.encodeproject.org/files/ENCFF095DSF/@@download/ENCFF095DSF.bigBed GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF328LAG bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF940PJA 10630020 ENCODE Processing Pipeline b36cd93355bffee24b46bd990e6d970c https://www.encodeproject.org/files/ENCFF328LAG/@@download/ENCFF328LAG.bigBed hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF336XCQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF492FGR 202704 ENCODE Processing Pipeline 5032925b40fd5498fa0dc927c7d45297 https://www.encodeproject.org/files/ENCFF336XCQ/@@download/ENCFF336XCQ.bigBed hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF370ZUB bigWig signal p-value ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF559ZZZ, ENCFF880PHX 461279885 ENCODE Processing Pipeline d9b0dbd8f8b1feb20034189ba215b8f5 https://www.encodeproject.org/files/ENCFF370ZUB/@@download/ENCFF370ZUB.bigWig GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF723MAM bigWig fold change over control ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF559ZZZ, ENCFF802DHG, ENCFF880PHX 431328817 ENCODE Processing Pipeline a662d3d6530427ae13a49ab346440246 https://www.encodeproject.org/files/ENCFF723MAM/@@download/ENCFF723MAM.bigWig GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF667JWA bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF651DQM 10985961 ENCODE Processing Pipeline 8eeab9ceb9833a000658a29eb5390a9e https://www.encodeproject.org/files/ENCFF667JWA/@@download/ENCFF667JWA.bigBed hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF887KVL bigWig fold change over control ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF559ZZZ, ENCFF880PHX 265492879 ENCODE Processing Pipeline 30fcc8165a20e809fa8d3cf0634255f6 https://www.encodeproject.org/files/ENCFF887KVL/@@download/ENCFF887KVL.bigWig GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF186LBP bigBed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF726QVS 6754704 ENCODE Processing Pipeline e008254dc3f59434657bca821b884ecf https://www.encodeproject.org/files/ENCFF186LBP/@@download/ENCFF186LBP.bigBed GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZMB bigBed narrowPeak peaks ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQK 2390159 Michael Snyder, Stanford 613f8b7261eb5d81dd71246d8fb73841 https://www.encodeproject.org/files/ENCFF000ZMB/@@download/ENCFF000ZMB.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000ZMC bam alignments ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZMK 529842741 Michael Snyder, Stanford f1f3b88fb3f579eb0d217cd7dafc68fb https://www.encodeproject.org/files/ENCFF000ZMC/@@download/ENCFF000ZMC.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZMD bam alignments ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZMM 500659677 Michael Snyder, Stanford 018a96c1c94273e4cf638250d02b2ef8 https://www.encodeproject.org/files/ENCFF000ZMD/@@download/ENCFF000ZMD.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZME bigWig signal ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 346450634 Michael Snyder, Stanford 1abf0acde5acaf2cee6d072f3fd2ed2d https://www.encodeproject.org/files/ENCFF000ZME/@@download/ENCFF000ZME.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000ZMK fastq reads ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1195092495 Michael Snyder, Stanford 398deffd799303ebd5332f1a971841f6 https://www.encodeproject.org/files/ENCFF000ZMK/@@download/ENCFF000ZMK.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZMO/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000ZMM fastq reads ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1105987296 Michael Snyder, Stanford 145d397a1b6b914fe85ad3b869d1a22a https://www.encodeproject.org/files/ENCFF000ZMM/@@download/ENCFF000ZMM.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZMO/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VQK bed narrowPeak peaks ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 947111 Michael Snyder, Stanford c8ac66b80e251957ef2eca358fd77d7f https://www.encodeproject.org/files/ENCFF001VQK/@@download/ENCFF001VQK.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CZO bed narrowPeak optimal idr thresholded peaks ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 642994 ENCODE Consortium Analysis Working Group 57ca7f5aea6377a2d1fef98fef2facd7 https://www.encodeproject.org/files/ENCFF002CZO/@@download/ENCFF002CZO.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF292BVX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZO 1527920 ENCODE Consortium dda4164003767a46ee10b360e29b4f0d https://www.encodeproject.org/files/ENCFF292BVX/@@download/ENCFF292BVX.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000OFN bigBed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TZE 499650 Richard Myers, HAIB dd17189f7b6141217a05429df8c2fa40 https://www.encodeproject.org/files/ENCFF000OFN/@@download/ENCFF000OFN.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFO bigBed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TZF 772425 Richard Myers, HAIB d7d650f926a4fd0f248d0c89b9f9b91b https://www.encodeproject.org/files/ENCFF000OFO/@@download/ENCFF000OFO.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFP bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000OFY 1529810193 Richard Myers, HAIB f939075d32b0d1f36de201ccc52b0c4f https://www.encodeproject.org/files/ENCFF000OFP/@@download/ENCFF000OFP.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFQ bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000OGA 1781221680 Richard Myers, HAIB 30962ce2ea184403d150d6b18f11237a https://www.encodeproject.org/files/ENCFF000OFQ/@@download/ENCFF000OFQ.bam hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OFR bigWig raw signal ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 19863642 Richard Myers, HAIB ceae92cdf36e872df10ee66ff5e9e67e https://www.encodeproject.org/files/ENCFF000OFR/@@download/ENCFF000OFR.bigWig hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OFS bigWig raw signal ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 23386396 Richard Myers, HAIB e7fd6d9622e39f53e2ef61df0a7b54ba https://www.encodeproject.org/files/ENCFF000OFS/@@download/ENCFF000OFS.bigWig hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000OFY fastq reads ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1475102617 Richard Myers, HAIB 1d07180af1e2d540e5f2e503dfa484e8 https://www.encodeproject.org/files/ENCFF000OFY/@@download/ENCFF000OFY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000OGA fastq reads ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1700877146 Richard Myers, HAIB 77e752e4533524e29ee48aa9a201a2b7 https://www.encodeproject.org/files/ENCFF000OGA/@@download/ENCFF000OGA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001TZE bed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 1 305172 Richard Myers, HAIB e4a357d83aa9b3dd2f92e76c42adbd7c https://www.encodeproject.org/files/ENCFF001TZE/@@download/ENCFF001TZE.bed.gz hg19 archived low read length, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001TZF bed broadPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 1 435677 Richard Myers, HAIB fed86e3a4083d8f32d3505f5d5244960 https://www.encodeproject.org/files/ENCFF001TZF/@@download/ENCFF001TZF.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CHX bed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 165707 ENCODE Consortium Analysis Working Group 8d8a5ea1ca26b64a1b032cd30579244c https://www.encodeproject.org/files/ENCFF002CHX/@@download/ENCFF002CHX.bed.gz hg19 archived low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF676WWI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHX 409950 ENCODE Consortium ca27211da4388ea6ee1fa2398606f437 https://www.encodeproject.org/files/ENCFF676WWI/@@download/ENCFF676WWI.bigBed hg19 archived low read length, inconsistent platforms biological replicates with identical biosample ENCFF865OWT bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF643CGH 1672484869 ENCODE Processing Pipeline ec212774cc96ae82460d6f72ce31a1c1 https://www.encodeproject.org/files/ENCFF865OWT/@@download/ENCFF865OWT.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF179ZBY bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF643CGH 1091053782 ENCODE Processing Pipeline b39be2f3af1fd76d82341e639ed1e02f https://www.encodeproject.org/files/ENCFF179ZBY/@@download/ENCFF179ZBY.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF870IWV bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF643CGH 1175725360 ENCODE Processing Pipeline 3c2ea19dd5d560e1160acb8d207d301f https://www.encodeproject.org/files/ENCFF870IWV/@@download/ENCFF870IWV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF163IQH bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF643CGH 1899014076 ENCODE Processing Pipeline f0fbb27776d323b9fe9283e598fb9a2d https://www.encodeproject.org/files/ENCFF163IQH/@@download/ENCFF163IQH.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF983VNV bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF807MUK 1668986240 ENCODE Processing Pipeline b85140eabc72433400d02a57d029adbb https://www.encodeproject.org/files/ENCFF983VNV/@@download/ENCFF983VNV.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF892ZFJ bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF807MUK 1085999808 ENCODE Processing Pipeline 32f213cd5ddf531a18aa2b54cebcea02 https://www.encodeproject.org/files/ENCFF892ZFJ/@@download/ENCFF892ZFJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF023ZGL bam unfiltered alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF807MUK 1896707307 ENCODE Processing Pipeline 10c24627805b9ee7c0ba7941d68d4e8f https://www.encodeproject.org/files/ENCFF023ZGL/@@download/ENCFF023ZGL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF462CSN bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF807MUK 1168513242 ENCODE Processing Pipeline ab766b1abc296a52e71558462f44ac47 https://www.encodeproject.org/files/ENCFF462CSN/@@download/ENCFF462CSN.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF431SQV bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 627054583 ENCODE Processing Pipeline 23347ba91b0ff31febc22fc374e9594e https://www.encodeproject.org/files/ENCFF431SQV/@@download/ENCFF431SQV.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF317YAC bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 524005840 ENCODE Processing Pipeline c8e1ec4e608c208b06d6443a1ce57d78 https://www.encodeproject.org/files/ENCFF317YAC/@@download/ENCFF317YAC.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF290UJM bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 705368585 ENCODE Processing Pipeline 851e4d291d373079f88615ae70d203a7 https://www.encodeproject.org/files/ENCFF290UJM/@@download/ENCFF290UJM.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF829YPR bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF462CSN, ENCFF508HCX, ENCFF892ZFJ 836302500 ENCODE Processing Pipeline ab998d9f152efacb6923cf55712ac41e https://www.encodeproject.org/files/ENCFF829YPR/@@download/ENCFF829YPR.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF675ICH bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 529204556 ENCODE Processing Pipeline fba571fa4384dd56647b172ae94ad55a https://www.encodeproject.org/files/ENCFF675ICH/@@download/ENCFF675ICH.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF113XQT bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF462CSN, ENCFF508HCX, ENCFF892ZFJ 925600755 ENCODE Processing Pipeline 3770311572beaa3ae8045af822182a75 https://www.encodeproject.org/files/ENCFF113XQT/@@download/ENCFF113XQT.bigWig hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF772NOR bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 6796170 ENCODE Processing Pipeline d2c09786f4febb2bd8af1b893b845f09 https://www.encodeproject.org/files/ENCFF772NOR/@@download/ENCFF772NOR.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF447TGK bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 7014992 ENCODE Processing Pipeline 09b4f31bf7a2f51d844e195cf75df42d https://www.encodeproject.org/files/ENCFF447TGK/@@download/ENCFF447TGK.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF876BBG bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF462CSN, ENCFF508HCX, ENCFF892ZFJ 7170912 ENCODE Processing Pipeline d97eeaacf574aefd267cc1dd71a32ea3 https://www.encodeproject.org/files/ENCFF876BBG/@@download/ENCFF876BBG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF702GZD bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF772NOR 12721660 ENCODE Processing Pipeline 56cea29360a2ae8c6a2c2ecc33ac5065 https://www.encodeproject.org/files/ENCFF702GZD/@@download/ENCFF702GZD.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF425MQO bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF447TGK 12448238 ENCODE Processing Pipeline e648e5d77932dcc6d9bab4d9fdda9dfa https://www.encodeproject.org/files/ENCFF425MQO/@@download/ENCFF425MQO.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF451ZQR bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF876BBG 12434593 ENCODE Processing Pipeline 096f61235eee95248e8912b4a559ac47 https://www.encodeproject.org/files/ENCFF451ZQR/@@download/ENCFF451ZQR.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF752VNM bed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF447TGK, ENCFF772NOR, ENCFF876BBG 182296 ENCODE Processing Pipeline 6b91d7841a3ca75afed517f864206555 https://www.encodeproject.org/files/ENCFF752VNM/@@download/ENCFF752VNM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF421TDT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF752VNM 431287 ENCODE Processing Pipeline bd3253fff191dab307243b1af13a3554 https://www.encodeproject.org/files/ENCFF421TDT/@@download/ENCFF421TDT.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF492YMU bed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF447TGK, ENCFF772NOR, ENCFF876BBG 198904 ENCODE Processing Pipeline c5f6d5dee5e25313d5e5dd85604244b8 https://www.encodeproject.org/files/ENCFF492YMU/@@download/ENCFF492YMU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF397BLP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF492YMU 458441 ENCODE Processing Pipeline 7d8e48f2dfe99fec2585a40b7a3904ba https://www.encodeproject.org/files/ENCFF397BLP/@@download/ENCFF397BLP.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF886PJI bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF179ZBY, ENCFF537DAJ, ENCFF870IWV 828308769 ENCODE Processing Pipeline 83e6bcec44eb722f8dbf96ebd411c7d6 https://www.encodeproject.org/files/ENCFF886PJI/@@download/ENCFF886PJI.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF249CGE bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF179ZBY, ENCFF537DAJ, ENCFF870IWV 914420872 ENCODE Processing Pipeline 40b6687d2b42c0582a8e0162d864c4bb https://www.encodeproject.org/files/ENCFF249CGE/@@download/ENCFF249CGE.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF005VFG bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF179ZBY, ENCFF537DAJ, ENCFF870IWV 7173148 ENCODE Processing Pipeline 0af39374cfd99c45f9f723692eea7a56 https://www.encodeproject.org/files/ENCFF005VFG/@@download/ENCFF005VFG.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF682UTO bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF005VFG 12426698 ENCODE Processing Pipeline c1b4a9682c3b8d31cce9ce1c9b616cec https://www.encodeproject.org/files/ENCFF682UTO/@@download/ENCFF682UTO.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF676THH bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF179ZBY, ENCFF537DAJ 564850563 ENCODE Processing Pipeline d48c473a38beeca5d5cb58c5a259ef1e https://www.encodeproject.org/files/ENCFF676THH/@@download/ENCFF676THH.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF550LCM bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF179ZBY, ENCFF537DAJ 533326844 ENCODE Processing Pipeline e8820879f5da34e8bb24b93f5b8a6b7e https://www.encodeproject.org/files/ENCFF550LCM/@@download/ENCFF550LCM.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF893UWT bigWig signal p-value ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF870IWV 604642948 ENCODE Processing Pipeline e290b9d0c7ebec47a72043cd120beb5f https://www.encodeproject.org/files/ENCFF893UWT/@@download/ENCFF893UWT.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF165EPX bigWig fold change over control ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF870IWV 533336890 ENCODE Processing Pipeline 1ccf0b2bb380f72cc6d155c88abb6fc1 https://www.encodeproject.org/files/ENCFF165EPX/@@download/ENCFF165EPX.bigWig GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF658OVR bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF179ZBY, ENCFF537DAJ 6761108 ENCODE Processing Pipeline 094aa95fad0e96ce186525c094c1bba3 https://www.encodeproject.org/files/ENCFF658OVR/@@download/ENCFF658OVR.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF731HQN bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF870IWV 6955701 ENCODE Processing Pipeline 93e266a55bbb3dfdeceee8bcb5f48802 https://www.encodeproject.org/files/ENCFF731HQN/@@download/ENCFF731HQN.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF021WLR bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF658OVR 12662477 ENCODE Processing Pipeline 0d7767488a8f4e0e7ef832b4ca2fe32d https://www.encodeproject.org/files/ENCFF021WLR/@@download/ENCFF021WLR.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF677TSC bigBed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF731HQN 12369044 ENCODE Processing Pipeline cd15c6bc785a15716557af26dbf4a8bb https://www.encodeproject.org/files/ENCFF677TSC/@@download/ENCFF677TSC.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF470LBM bed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF005VFG, ENCFF419RSJ, ENCFF658OVR, ENCFF731HQN 184799 ENCODE Processing Pipeline 5e3b2904bab9ac704c457af5ec041bf1 https://www.encodeproject.org/files/ENCFF470LBM/@@download/ENCFF470LBM.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF298JKI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF470LBM 431772 ENCODE Processing Pipeline 8247058088ee4733c9fdb15be14de82e https://www.encodeproject.org/files/ENCFF298JKI/@@download/ENCFF298JKI.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF383YEA bed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF005VFG, ENCFF419RSJ, ENCFF658OVR, ENCFF731HQN 200490 ENCODE Processing Pipeline 94884b6e6021e82de169b91916d54ba2 https://www.encodeproject.org/files/ENCFF383YEA/@@download/ENCFF383YEA.bed.gz GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF308KDS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF383YEA 457158 ENCODE Processing Pipeline 244da00df81f49a2fb36e8a46f09a517 https://www.encodeproject.org/files/ENCFF308KDS/@@download/ENCFF308KDS.bigBed GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001GZV bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HAI 674074540 John Stamatoyannopoulos, UW 3664454219b73f8869052f94026820a4 https://www.encodeproject.org/files/ENCFF001GZV/@@download/ENCFF001GZV.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001GZY bigBed broadPeak hotspots ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMV 3600401 John Stamatoyannopoulos, UW 8a56fc28ef48f1a5d367486cdaa706a5 https://www.encodeproject.org/files/ENCFF001GZY/@@download/ENCFF001GZY.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001GZZ bigBed broadPeak hotspots ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMW 4212905 John Stamatoyannopoulos, UW 9000c77c8e63f34f3969ffac5fa3781e https://www.encodeproject.org/files/ENCFF001GZZ/@@download/ENCFF001GZZ.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAA bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XMX 1169608 John Stamatoyannopoulos, UW 0bb72a45925cb47f98f87ec08d616973 https://www.encodeproject.org/files/ENCFF001HAA/@@download/ENCFF001HAA.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAB bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XMY 1075680 John Stamatoyannopoulos, UW 63d82db09463ad270a647c1de9e5ef5c https://www.encodeproject.org/files/ENCFF001HAB/@@download/ENCFF001HAB.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAC bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAJ 763738399 John Stamatoyannopoulos, UW e99856ab9ff37a3b201cf0da3876bf3a https://www.encodeproject.org/files/ENCFF001HAC/@@download/ENCFF001HAC.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAD bigWig raw signal ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZV 101537189 John Stamatoyannopoulos, UW ef4a6006ef11bb83d5df9525ff6f69a5 https://www.encodeproject.org/files/ENCFF001HAD/@@download/ENCFF001HAD.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAE bigWig raw signal ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAC 146488787 John Stamatoyannopoulos, UW 3cbb92b33d10f7becb09daddf58c41db https://www.encodeproject.org/files/ENCFF001HAE/@@download/ENCFF001HAE.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAI fastq reads ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 1140728759 John Stamatoyannopoulos, UW d2b371d2fe25bcc2a455cc8204d74449 https://www.encodeproject.org/files/ENCFF001HAI/@@download/ENCFF001HAI.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HAM/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001HAJ fastq reads ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1184938353 John Stamatoyannopoulos, UW e7f7f176cdc9d536d24646ae93fa4d5a https://www.encodeproject.org/files/ENCFF001HAJ/@@download/ENCFF001HAJ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HAM/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001XMV bed broadPeak hotspots ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZV 2572119 John Stamatoyannopoulos, UW cb678ef3750835117d876bbb57ab89cc https://www.encodeproject.org/files/ENCFF001XMV/@@download/ENCFF001XMV.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001XMW bed broadPeak hotspots ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAC 3024405 John Stamatoyannopoulos, UW 37222e322aec25c3ca19bd9ebad89203 https://www.encodeproject.org/files/ENCFF001XMW/@@download/ENCFF001XMW.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001XMX bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZV 846025 John Stamatoyannopoulos, UW 945c5c42b7eed394da0967d381ec73ec https://www.encodeproject.org/files/ENCFF001XMX/@@download/ENCFF001XMX.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF001XMY bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAC 766079 John Stamatoyannopoulos, UW 642d32758871ebed798792c9a8f867fb https://www.encodeproject.org/files/ENCFF001XMY/@@download/ENCFF001XMY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF002DCD bed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001GZV, ENCFF001HAC 955846 ENCODE Consortium Analysis Working Group 2b14a190e67d2dffff232a8955932ef7 https://www.encodeproject.org/files/ENCFF002DCD/@@download/ENCFF002DCD.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF714WYC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DCD 1926914 ENCODE Consortium d763aa64059f6b1b402019583c3048e2 https://www.encodeproject.org/files/ENCFF714WYC/@@download/ENCFF714WYC.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF252BQZ bam unfiltered alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAI, ENCFF643CGH 1162168908 ENCODE Processing Pipeline df00a9ad916bd68757b328b2cba3e55f https://www.encodeproject.org/files/ENCFF252BQZ/@@download/ENCFF252BQZ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF761FZT bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAI, ENCFF643CGH 370854231 ENCODE Processing Pipeline 4fdbaacfe4a39e3f7b7348dc877e5f05 https://www.encodeproject.org/files/ENCFF761FZT/@@download/ENCFF761FZT.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF628ZLC bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HAJ, ENCFF643CGH 573132669 ENCODE Processing Pipeline 125dfdc3afd6ff724ed16703110f348e https://www.encodeproject.org/files/ENCFF628ZLC/@@download/ENCFF628ZLC.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF192OIE bam unfiltered alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HAJ, ENCFF643CGH 1281338209 ENCODE Processing Pipeline 5b9348c55dd9df38a3c463bb685003f7 https://www.encodeproject.org/files/ENCFF192OIE/@@download/ENCFF192OIE.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF137JYO bam unfiltered alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAI, ENCFF807MUK 1159108883 ENCODE Processing Pipeline b6d65f892fee68e3c8ba2a9445f1d215 https://www.encodeproject.org/files/ENCFF137JYO/@@download/ENCFF137JYO.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF201WVG bam unfiltered alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HAJ, ENCFF807MUK 1277405849 ENCODE Processing Pipeline ba8f98a802d4b8f79d7c0d930f89590c https://www.encodeproject.org/files/ENCFF201WVG/@@download/ENCFF201WVG.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF364PXD bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HAJ, ENCFF807MUK 573342220 ENCODE Processing Pipeline d53cdb507d945ddaa2654f8d8eaa4f0b https://www.encodeproject.org/files/ENCFF364PXD/@@download/ENCFF364PXD.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF054SRM bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAI, ENCFF807MUK 371053695 ENCODE Processing Pipeline cbcb3188bf317a37327d52f775d3ebee https://www.encodeproject.org/files/ENCFF054SRM/@@download/ENCFF054SRM.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF309RCF bigWig signal p-value ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF628ZLC, ENCFF851MPE 272139396 ENCODE Processing Pipeline 16a2255d51831f11bb630cfae3fdbcb4 https://www.encodeproject.org/files/ENCFF309RCF/@@download/ENCFF309RCF.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF484UAE bigWig fold change over control ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF628ZLC, ENCFF851MPE 212213646 ENCODE Processing Pipeline db915ccdf12465ddc42842abc12d0f0c https://www.encodeproject.org/files/ENCFF484UAE/@@download/ENCFF484UAE.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF026IFC bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF326KOS 7076738 ENCODE Processing Pipeline 8dc0c9780e40fbdee8e94400b1b16e3d https://www.encodeproject.org/files/ENCFF026IFC/@@download/ENCFF026IFC.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF640HTE bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF912COX 7659579 ENCODE Processing Pipeline e191eb322c4c3d4595d790447bda5eab https://www.encodeproject.org/files/ENCFF640HTE/@@download/ENCFF640HTE.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF547FCE bigWig signal p-value ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF761FZT, ENCFF851MPE 293530801 ENCODE Processing Pipeline 0ba4663fad38df350598a25780c42c94 https://www.encodeproject.org/files/ENCFF547FCE/@@download/ENCFF547FCE.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF492LES bigWig signal p-value ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF628ZLC, ENCFF761FZT, ENCFF851MPE 305583659 ENCODE Processing Pipeline 9f33fb71f6b1fd352946bfe9f1ae65e4 https://www.encodeproject.org/files/ENCFF492LES/@@download/ENCFF492LES.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF473QVA bigWig fold change over control ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF628ZLC, ENCFF761FZT, ENCFF851MPE 330497419 ENCODE Processing Pipeline 6cf18eee5a7de166f8d8303db9d08078 https://www.encodeproject.org/files/ENCFF473QVA/@@download/ENCFF473QVA.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF990ZZT bed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF326KOS, ENCFF411SQU, ENCFF419RSJ, ENCFF912COX 745994 ENCODE Processing Pipeline c42c86eb94bae94b98236b240447bc21 https://www.encodeproject.org/files/ENCFF990ZZT/@@download/ENCFF990ZZT.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF279EPB bigWig fold change over control ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF761FZT, ENCFF851MPE 144940343 ENCODE Processing Pipeline ba7cbf6fb23371c56c8b14c7e3cdd4f7 https://www.encodeproject.org/files/ENCFF279EPB/@@download/ENCFF279EPB.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF538LXB bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF411SQU 8313977 ENCODE Processing Pipeline e8f68c309612f8c2b5eabd0e50b4bdc1 https://www.encodeproject.org/files/ENCFF538LXB/@@download/ENCFF538LXB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF179QAX bed narrowPeak conservative idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF326KOS, ENCFF411SQU, ENCFF419RSJ, ENCFF912COX 689366 ENCODE Processing Pipeline 1ac6d0bda7b2b55daa560607f2064dba https://www.encodeproject.org/files/ENCFF179QAX/@@download/ENCFF179QAX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF326KOS bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF761FZT, ENCFF851MPE 3528620 ENCODE Processing Pipeline 3388a9b76fcbd7418f5683d213a46368 https://www.encodeproject.org/files/ENCFF326KOS/@@download/ENCFF326KOS.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF912COX bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF628ZLC, ENCFF851MPE 3805041 ENCODE Processing Pipeline e520506ddb1adec80ca1298016964107 https://www.encodeproject.org/files/ENCFF912COX/@@download/ENCFF912COX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF411SQU bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF628ZLC, ENCFF761FZT, ENCFF851MPE 4157836 ENCODE Processing Pipeline 842d84cb6a5e4091c22ac391ffdb31a0 https://www.encodeproject.org/files/ENCFF411SQU/@@download/ENCFF411SQU.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF205RZT bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF179QAX 1223315 ENCODE Processing Pipeline 82fb27edf264f62d3a80d0cc3b760942 https://www.encodeproject.org/files/ENCFF205RZT/@@download/ENCFF205RZT.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF557GKH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF990ZZT 1305548 ENCODE Processing Pipeline 28b1c46bb41e86a2c50eabc7375a83f4 https://www.encodeproject.org/files/ENCFF557GKH/@@download/ENCFF557GKH.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF978MEQ bigWig fold change over control ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF054SRM, ENCFF610PHZ 145178014 ENCODE Processing Pipeline 19eebea0f74a3ebaef4d157b0ed908a3 https://www.encodeproject.org/files/ENCFF978MEQ/@@download/ENCFF978MEQ.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF112VXD bigWig signal p-value ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF364PXD, ENCFF610PHZ 272123546 ENCODE Processing Pipeline 4aeaf6f79e36ba20933300023f101a8f https://www.encodeproject.org/files/ENCFF112VXD/@@download/ENCFF112VXD.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF626HUN bigWig fold change over control ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF364PXD, ENCFF610PHZ 214648028 ENCODE Processing Pipeline 70e1a219dcae8d4237adb09ed7655d9c https://www.encodeproject.org/files/ENCFF626HUN/@@download/ENCFF626HUN.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF164FLB bigWig signal p-value ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF054SRM, ENCFF610PHZ 275831423 ENCODE Processing Pipeline bfb155ff68bd9ed4c3631bed6239d888 https://www.encodeproject.org/files/ENCFF164FLB/@@download/ENCFF164FLB.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF245RNL bigWig signal p-value ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF054SRM, ENCFF364PXD, ENCFF610PHZ 305695934 ENCODE Processing Pipeline aa31e47d9f1a70c416b53ab751e14fe5 https://www.encodeproject.org/files/ENCFF245RNL/@@download/ENCFF245RNL.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF760NWH bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF450FYB 7079534 ENCODE Processing Pipeline cb7b7ebe4b7f91a23e3fbbf46e63a4c0 https://www.encodeproject.org/files/ENCFF760NWH/@@download/ENCFF760NWH.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF889XEP bigWig fold change over control ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF054SRM, ENCFF364PXD, ENCFF610PHZ 330348103 ENCODE Processing Pipeline ea6252b8ab50bd3c57ee82d565050c04 https://www.encodeproject.org/files/ENCFF889XEP/@@download/ENCFF889XEP.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF450FYB bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF054SRM, ENCFF610PHZ 3540401 ENCODE Processing Pipeline a6f63c9f563d046e48146a95d85ce651 https://www.encodeproject.org/files/ENCFF450FYB/@@download/ENCFF450FYB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF618QXB bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF532LQQ 7679817 ENCODE Processing Pipeline 55b4996ed2d64c478355598f842e3744 https://www.encodeproject.org/files/ENCFF618QXB/@@download/ENCFF618QXB.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF301DBY bigBed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF146XLM 8333806 ENCODE Processing Pipeline 4e65488324eb2442f930e79030869a13 https://www.encodeproject.org/files/ENCFF301DBY/@@download/ENCFF301DBY.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF504EWS bed narrowPeak conservative idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF146XLM, ENCFF450FYB, ENCFF532LQQ 692123 ENCODE Processing Pipeline f8987f07ffba71095281c33f52562898 https://www.encodeproject.org/files/ENCFF504EWS/@@download/ENCFF504EWS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF532LQQ bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF364PXD, ENCFF610PHZ 3817285 ENCODE Processing Pipeline a0b5b1b9b91a6d0b9a4a0f52496581c7 https://www.encodeproject.org/files/ENCFF532LQQ/@@download/ENCFF532LQQ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF146XLM bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF054SRM, ENCFF364PXD, ENCFF610PHZ 4174681 ENCODE Processing Pipeline 9464adaeb43e86e33b9bbc9baf335608 https://www.encodeproject.org/files/ENCFF146XLM/@@download/ENCFF146XLM.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF364TZL bigBed narrowPeak conservative idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF504EWS 1231812 ENCODE Processing Pipeline bd0d2db11dbac35f398fd0acd054d025 https://www.encodeproject.org/files/ENCFF364TZL/@@download/ENCFF364TZL.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF916YEM bigBed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF882YQH 1326814 ENCODE Processing Pipeline 9565f8a81cc927ebacbd7d1b9c552f63 https://www.encodeproject.org/files/ENCFF916YEM/@@download/ENCFF916YEM.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF882YQH bed narrowPeak optimal idr thresholded peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF146XLM, ENCFF450FYB, ENCFF532LQQ 759010 ENCODE Processing Pipeline 7251e79d7216a84cc06fd9967db74d19 https://www.encodeproject.org/files/ENCFF882YQH/@@download/ENCFF882YQH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF000WZU bam alignments ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAA 734120947 Michael Snyder, Stanford f0ec8fed089b73bbd2ec5a1c66d2c333 https://www.encodeproject.org/files/ENCFF000WZU/@@download/ENCFF000WZU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZV bam alignments ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAC 727223225 Michael Snyder, Stanford 3b09d89488b0c642e35cd74f6e048fc3 https://www.encodeproject.org/files/ENCFF000WZV/@@download/ENCFF000WZV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZW bigBed narrowPeak peaks ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHT 140798 Michael Snyder, Stanford b047abbc2a5c84f53760e72ac2b2f0ab https://www.encodeproject.org/files/ENCFF000WZW/@@download/ENCFF000WZW.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZX bam alignments ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XAB 773318353 Michael Snyder, Stanford 512944f8481e404a752ce1b48df4dc23 https://www.encodeproject.org/files/ENCFF000WZX/@@download/ENCFF000WZX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZY bigWig signal ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 476370435 Michael Snyder, Stanford 3fadc8e46c958852b25f411d3f819c11 https://www.encodeproject.org/files/ENCFF000WZY/@@download/ENCFF000WZY.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000XAA fastq reads ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 552168320 Michael Snyder, Stanford b9a4b1acf4cdf307fc308ab09e175189 https://www.encodeproject.org/files/ENCFF000XAA/@@download/ENCFF000XAA.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIG/ released biological replicates with identical biosample insufficient read length ENCFF000XAB fastq reads ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 3 1 28 single-ended 582724018 Michael Snyder, Stanford 77ac5efe93b9597cd2d5fd020de3ee8e https://www.encodeproject.org/files/ENCFF000XAB/@@download/ENCFF000XAB.fastq.gz Illumina Genome Analyzer released biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000XAC fastq reads ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 549977270 Michael Snyder, Stanford 16ec11174257b5414b5c1b12175a6153 https://www.encodeproject.org/files/ENCFF000XAC/@@download/ENCFF000XAC.fastq.gz Illumina Genome Analyzer /files/ENCFF000XIH/ released biological replicates with identical biosample insufficient read length ENCFF001VHT bed narrowPeak peaks ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 34287 Michael Snyder, Stanford edf654888f48670a4dffd3d1216cc99b https://www.encodeproject.org/files/ENCFF001VHT/@@download/ENCFF001VHT.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CRU bed narrowPeak optimal idr thresholded peaks ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 67877 ENCODE Consortium Analysis Working Group 432720a3a0a34aa53a659fba38833fbe https://www.encodeproject.org/files/ENCFF002CRU/@@download/ENCFF002CRU.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF319TAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRU 227843 ENCODE Consortium 198be2bd102ce96ebffdd311ab490149 https://www.encodeproject.org/files/ENCFF319TAQ/@@download/ENCFF319TAQ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000NXF bigBed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TXM 627176 Richard Myers, HAIB 6d738d20bca838f9c8995036c6fbbc42 https://www.encodeproject.org/files/ENCFF000NXF/@@download/ENCFF000NXF.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000NXG bigBed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TXN 973497 Richard Myers, HAIB a922477259b61907ab7c966ad624689b https://www.encodeproject.org/files/ENCFF000NXG/@@download/ENCFF000NXG.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000NXH bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NXS 1781920093 Richard Myers, HAIB bb7e51815add8c05b57bf70ea024a7e2 https://www.encodeproject.org/files/ENCFF000NXH/@@download/ENCFF000NXH.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000NXI bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NXT 1998873501 Richard Myers, HAIB 6ed47cc000eedcece3ae4b17bbfb7518 https://www.encodeproject.org/files/ENCFF000NXI/@@download/ENCFF000NXI.bam hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000NXK bigWig raw signal ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 23014647 Richard Myers, HAIB 78df316d2da41ec0780971469e5424ff https://www.encodeproject.org/files/ENCFF000NXK/@@download/ENCFF000NXK.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000NXL bigWig raw signal ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 43546270 Richard Myers, HAIB 6308b3ad00ee633e6402a752b3cb57ab https://www.encodeproject.org/files/ENCFF000NXL/@@download/ENCFF000NXL.bigWig hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000NXS fastq reads ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1733233761 Richard Myers, HAIB a5e198a9b58bb3c4ea62124ad6ac53c3 https://www.encodeproject.org/files/ENCFF000NXS/@@download/ENCFF000NXS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000NXT fastq reads ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1934776182 Richard Myers, HAIB b62bc8ce3c68473080429cfc219eecfa https://www.encodeproject.org/files/ENCFF000NXT/@@download/ENCFF000NXT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODV/ released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF001TXM bed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 1 321574 Richard Myers, HAIB dfc0edebdadc973cc4b31a064a019a1a https://www.encodeproject.org/files/ENCFF001TXM/@@download/ENCFF001TXM.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001TXN bed broadPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 1 637122 Richard Myers, HAIB e9e00b6c695dd6ebf2ae7a85dbe15ca9 https://www.encodeproject.org/files/ENCFF001TXN/@@download/ENCFF001TXN.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CHE bed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 278252 ENCODE Consortium Analysis Working Group 82bd6f9b6af45c6d54c8a54938b9ad60 https://www.encodeproject.org/files/ENCFF002CHE/@@download/ENCFF002CHE.bed.gz hg19 archived low read length, borderline replicate concordance, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF493WPQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CHE 704123 ENCODE Consortium c7800428d24497045f1f5cdeb2ec688a https://www.encodeproject.org/files/ENCFF493WPQ/@@download/ENCFF493WPQ.bigBed hg19 archived low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF460FPN bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF643CGH 1323854644 ENCODE Processing Pipeline 7de773e47535fbcfa197a2efea3ac334 https://www.encodeproject.org/files/ENCFF460FPN/@@download/ENCFF460FPN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF817YQB bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF643CGH 1954456697 ENCODE Processing Pipeline 03c82264e97e65ce113f22522e6f8e4c https://www.encodeproject.org/files/ENCFF817YQB/@@download/ENCFF817YQB.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF310HBV bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF643CGH 2129081320 ENCODE Processing Pipeline 4f3fb3758c52209c830320fa8c0506d6 https://www.encodeproject.org/files/ENCFF310HBV/@@download/ENCFF310HBV.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF682HUS bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF643CGH 1379189555 ENCODE Processing Pipeline 1cd6c6b083519cdcae9d3732cf37af94 https://www.encodeproject.org/files/ENCFF682HUS/@@download/ENCFF682HUS.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF390XDX bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF807MUK 1951014201 ENCODE Processing Pipeline fc04ddf78d5179efdd8f6ca82750aaac https://www.encodeproject.org/files/ENCFF390XDX/@@download/ENCFF390XDX.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF712MCI bam unfiltered alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF807MUK 2128276849 ENCODE Processing Pipeline 6ea395052df98c54d11ecbfe289152d1 https://www.encodeproject.org/files/ENCFF712MCI/@@download/ENCFF712MCI.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF420JTZ bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF807MUK 1318420704 ENCODE Processing Pipeline a13d550c92ed22718bcc0b1ab646b129 https://www.encodeproject.org/files/ENCFF420JTZ/@@download/ENCFF420JTZ.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF441NFC bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF807MUK 1371827399 ENCODE Processing Pipeline 67fb6af540890a2d6be971ec29ee38e3 https://www.encodeproject.org/files/ENCFF441NFC/@@download/ENCFF441NFC.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF353HRU bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF460FPN, ENCFF537DAJ 694418513 ENCODE Processing Pipeline 2c25e7ecd7836c655cb8ce12060b8e02 https://www.encodeproject.org/files/ENCFF353HRU/@@download/ENCFF353HRU.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF250UMZ bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF682HUS 613431754 ENCODE Processing Pipeline c155b0fed5f2db5fbcd54f5e443a1e64 https://www.encodeproject.org/files/ENCFF250UMZ/@@download/ENCFF250UMZ.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF006AYB bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF460FPN, ENCFF537DAJ, ENCFF682HUS 811473159 ENCODE Processing Pipeline 319df47b319ec22cd31e09066451c671 https://www.encodeproject.org/files/ENCFF006AYB/@@download/ENCFF006AYB.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF092PKL bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF460FPN, ENCFF537DAJ 618064029 ENCODE Processing Pipeline 815d6df802f898394c7365563fb7a0ca https://www.encodeproject.org/files/ENCFF092PKL/@@download/ENCFF092PKL.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF655JEP bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF460FPN, ENCFF537DAJ, ENCFF682HUS 1037505298 ENCODE Processing Pipeline a4ab6181f01828bb8b6dfb47c5a1c77f https://www.encodeproject.org/files/ENCFF655JEP/@@download/ENCFF655JEP.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF435YJX bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF682HUS 623504829 ENCODE Processing Pipeline 848e46b09ffcb865e49dc7e37209d7cf https://www.encodeproject.org/files/ENCFF435YJX/@@download/ENCFF435YJX.bigWig GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF439SFD bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF460FPN, ENCFF537DAJ, ENCFF682HUS 7180783 ENCODE Processing Pipeline 0539b50cd6a50d6fa1dc4589f09b1eaa https://www.encodeproject.org/files/ENCFF439SFD/@@download/ENCFF439SFD.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF240AWE bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF439SFD 12348685 ENCODE Processing Pipeline 561eed83272dc4079e2211afd872fc75 https://www.encodeproject.org/files/ENCFF240AWE/@@download/ENCFF240AWE.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF671GGV bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF537DAJ, ENCFF682HUS 6993039 ENCODE Processing Pipeline 185f86ec63185add01c6ef2a769afee1 https://www.encodeproject.org/files/ENCFF671GGV/@@download/ENCFF671GGV.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF711PSU bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF671GGV 12177450 ENCODE Processing Pipeline db5aea1e123f55c9f390b4406a5a613c https://www.encodeproject.org/files/ENCFF711PSU/@@download/ENCFF711PSU.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF947BLB bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF201UEN 12657161 ENCODE Processing Pipeline ee65dd12d49a90bff6cd833dee162c6d https://www.encodeproject.org/files/ENCFF947BLB/@@download/ENCFF947BLB.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF661FMB bed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF201UEN, ENCFF419RSJ, ENCFF439SFD, ENCFF671GGV 312895 ENCODE Processing Pipeline 44faaa2741c9021d9b8257fcca2ea2cb https://www.encodeproject.org/files/ENCFF661FMB/@@download/ENCFF661FMB.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF049FPS bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF112SWI 531254 ENCODE Processing Pipeline c159669b462311d6468b50eb5a00d4ff https://www.encodeproject.org/files/ENCFF049FPS/@@download/ENCFF049FPS.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF201UEN bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF460FPN, ENCFF537DAJ 6850120 ENCODE Processing Pipeline ddcef1c4a424871f795eb8d59e0a4d79 https://www.encodeproject.org/files/ENCFF201UEN/@@download/ENCFF201UEN.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF112SWI bed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF201UEN, ENCFF419RSJ, ENCFF439SFD, ENCFF671GGV 248510 ENCODE Processing Pipeline c4d43674581b9d0fe6623ef003f9dfb6 https://www.encodeproject.org/files/ENCFF112SWI/@@download/ENCFF112SWI.bed.gz GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF359XTI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF661FMB 629393 ENCODE Processing Pipeline 1e6fd19c9b4f3d49c3f1f78ad87cf1b9 https://www.encodeproject.org/files/ENCFF359XTI/@@download/ENCFF359XTI.bigBed GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF130IRQ bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 656112496 ENCODE Processing Pipeline ba81a0c142243f14b5fb3539aacb0284 https://www.encodeproject.org/files/ENCFF130IRQ/@@download/ENCFF130IRQ.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF869CSW bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 663110805 ENCODE Processing Pipeline 0bfcacffd32f01bd8963c81283c8d6eb https://www.encodeproject.org/files/ENCFF869CSW/@@download/ENCFF869CSW.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF304JAD bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 617514873 ENCODE Processing Pipeline bd844834bfec7474c6fed6a27b6b25d9 https://www.encodeproject.org/files/ENCFF304JAD/@@download/ENCFF304JAD.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF181SIR bigWig signal p-value ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420JTZ, ENCFF441NFC, ENCFF508HCX 803613127 ENCODE Processing Pipeline 1bc3e9fe3d801217d11eb1a5ac3f2a1c https://www.encodeproject.org/files/ENCFF181SIR/@@download/ENCFF181SIR.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF040FGY bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 619634162 ENCODE Processing Pipeline 0fa995e15862c3aa3c2917a0b8d2e2f8 https://www.encodeproject.org/files/ENCFF040FGY/@@download/ENCFF040FGY.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF906VFS bigWig fold change over control ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420JTZ, ENCFF441NFC, ENCFF508HCX 1021987491 ENCODE Processing Pipeline 8ffbdad3616b5a7610229492369b0eb3 https://www.encodeproject.org/files/ENCFF906VFS/@@download/ENCFF906VFS.bigWig hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF574RLW bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 7111374 ENCODE Processing Pipeline cf8a5f09dbdfe47045ca6d490ea4c67b https://www.encodeproject.org/files/ENCFF574RLW/@@download/ENCFF574RLW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF457WBH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF611WSJ 526229 ENCODE Processing Pipeline db95f295b87078b33061d56260c5e6b4 https://www.encodeproject.org/files/ENCFF457WBH/@@download/ENCFF457WBH.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF202XQV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF413VUC 645882 ENCODE Processing Pipeline 8328d21cb9c40bf1aa0e417021698cd1 https://www.encodeproject.org/files/ENCFF202XQV/@@download/ENCFF202XQV.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF611WSJ bed narrowPeak conservative idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF496UYK, ENCFF574RLW, ENCFF600RTA 244271 ENCODE Processing Pipeline e04c0db5534192819aaab3547f10e094 https://www.encodeproject.org/files/ENCFF611WSJ/@@download/ENCFF611WSJ.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF496UYK bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 6892196 ENCODE Processing Pipeline 6249aeafbda77ae037a51105225000bc https://www.encodeproject.org/files/ENCFF496UYK/@@download/ENCFF496UYK.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF600RTA bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF420JTZ, ENCFF441NFC, ENCFF508HCX 7195967 ENCODE Processing Pipeline 8529367d407e1d60f0a7c73d126a97b2 https://www.encodeproject.org/files/ENCFF600RTA/@@download/ENCFF600RTA.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF101PFI bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF496UYK 12687514 ENCODE Processing Pipeline 7729517f0f7f2c687e2cd9fdc0e539d8 https://www.encodeproject.org/files/ENCFF101PFI/@@download/ENCFF101PFI.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF820WNI bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF574RLW 12329614 ENCODE Processing Pipeline 54fb29b546488a235958cbf9a80677b6 https://www.encodeproject.org/files/ENCFF820WNI/@@download/ENCFF820WNI.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF149NUP bigBed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF600RTA 12374793 ENCODE Processing Pipeline 5c122c01c3211b49381307cd26ee44fa https://www.encodeproject.org/files/ENCFF149NUP/@@download/ENCFF149NUP.bigBed hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF413VUC bed narrowPeak optimal idr thresholded peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF496UYK, ENCFF574RLW, ENCFF600RTA 322940 ENCODE Processing Pipeline 986211e162ebe80002d15d053f4e37f8 https://www.encodeproject.org/files/ENCFF413VUC/@@download/ENCFF413VUC.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF000ZNU bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 1 330212042 Peggy Farnham, USC ba7e2e6538942dbfc34e3cdd692e9039 https://www.encodeproject.org/files/ENCFF000ZNU/@@download/ENCFF000ZNU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000ZNV bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 1 456598482 Peggy Farnham, USC 9638ac811c335a99fc4077381811ec24 https://www.encodeproject.org/files/ENCFF000ZNV/@@download/ENCFF000ZNV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000ZNW bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQQ 1502905 Peggy Farnham, USC 7dd454f566ffe4e86f1b136e6fa12776 https://www.encodeproject.org/files/ENCFF000ZNW/@@download/ENCFF000ZNW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000ZNX fastq reads ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 623172039 Peggy Farnham, USC 4ac331ad31cd9a8f200eb86949161bf6 https://www.encodeproject.org/files/ENCFF000ZNX/@@download/ENCFF000ZNX.fastq.gz Illumina Genome Analyzer II /files/ENCFF000VJK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000ZNZ fastq reads ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 854576679 Peggy Farnham, USC 7ef25f23cd63de0dc20655cb02f2d1f5 https://www.encodeproject.org/files/ENCFF000ZNZ/@@download/ENCFF000ZNZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF000VJK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000ZOB bigWig signal ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 309739219 Peggy Farnham, USC 1766de2cbd00ab4d2ae66a2fbb73b404 https://www.encodeproject.org/files/ENCFF000ZOB/@@download/ENCFF000ZOB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001VQQ bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 543469 Peggy Farnham, USC eef703eeb30d2387e52b50b6e9547451 https://www.encodeproject.org/files/ENCFF001VQQ/@@download/ENCFF001VQQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF002CZU bed narrowPeak optimal idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 293784 ENCODE Consortium Analysis Working Group 015fc48737494dafbc1f83414136a0d5 https://www.encodeproject.org/files/ENCFF002CZU/@@download/ENCFF002CZU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF066PFL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CZU 731610 ENCODE Consortium fc41b86a4eff3953a5bb2f0b7d6f9d24 https://www.encodeproject.org/files/ENCFF066PFL/@@download/ENCFF066PFL.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF471CXF bam unfiltered alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZNX, ENCFF643CGH 708327451 ENCODE Processing Pipeline 1c6c1fee17e813bb75561367dbdf42dd https://www.encodeproject.org/files/ENCFF471CXF/@@download/ENCFF471CXF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF613CHF bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZNX, ENCFF643CGH 456819221 ENCODE Processing Pipeline f943cea61994f2e7940963fd8ca3aafd https://www.encodeproject.org/files/ENCFF613CHF/@@download/ENCFF613CHF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF040QSS bam unfiltered alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZNZ, ENCFF643CGH 955384551 ENCODE Processing Pipeline b4e444e64659175a7f4cd5967da84065 https://www.encodeproject.org/files/ENCFF040QSS/@@download/ENCFF040QSS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF786INL bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZNZ, ENCFF643CGH 610458076 ENCODE Processing Pipeline f86a737d27c0b28d3e5592ff5625d417 https://www.encodeproject.org/files/ENCFF786INL/@@download/ENCFF786INL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF956FJS bam unfiltered alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZNX, ENCFF807MUK 704682624 ENCODE Processing Pipeline d584ccfcf32702f6c72c37a51f879ade https://www.encodeproject.org/files/ENCFF956FJS/@@download/ENCFF956FJS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF022SZB bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZNX, ENCFF807MUK 457000859 ENCODE Processing Pipeline 20988126dc9d93ab95f2276c7b3e0877 https://www.encodeproject.org/files/ENCFF022SZB/@@download/ENCFF022SZB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF014XIN bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZNZ, ENCFF807MUK 610643625 ENCODE Processing Pipeline 99007aa55c030d748db1d01ea2dd96f0 https://www.encodeproject.org/files/ENCFF014XIN/@@download/ENCFF014XIN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF056JIR bam unfiltered alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZNZ, ENCFF807MUK 949692747 ENCODE Processing Pipeline ff5bdcadae1ad9c9972b981d0d6ddce8 https://www.encodeproject.org/files/ENCFF056JIR/@@download/ENCFF056JIR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF884NTL bigWig signal p-value ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF675MQQ, ENCFF786INL 500205842 ENCODE Processing Pipeline d6701b2b6cae6af4fbdaefa03e80cfce https://www.encodeproject.org/files/ENCFF884NTL/@@download/ENCFF884NTL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF509JIR bigWig signal p-value ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF613CHF, ENCFF675MQQ 369021477 ENCODE Processing Pipeline 373b5f775fca5866264249d7b222f21e https://www.encodeproject.org/files/ENCFF509JIR/@@download/ENCFF509JIR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF523XOS bigWig signal p-value ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF613CHF, ENCFF675MQQ, ENCFF786INL 592093922 ENCODE Processing Pipeline 559a31daac1f93e54d40a626f0a1e334 https://www.encodeproject.org/files/ENCFF523XOS/@@download/ENCFF523XOS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF185SQA bigWig fold change over control ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF613CHF, ENCFF675MQQ 316419003 ENCODE Processing Pipeline 599e6c5a37c8a3e5cf14041d0ea6b4f9 https://www.encodeproject.org/files/ENCFF185SQA/@@download/ENCFF185SQA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF858URS bigWig fold change over control ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF675MQQ, ENCFF786INL 376805778 ENCODE Processing Pipeline 6d6c512ed7b177164821b634fb43f138 https://www.encodeproject.org/files/ENCFF858URS/@@download/ENCFF858URS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF742SZL bigWig fold change over control ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF613CHF, ENCFF675MQQ, ENCFF786INL 560784095 ENCODE Processing Pipeline 042f489cdcf7df58859647d4d1e75d68 https://www.encodeproject.org/files/ENCFF742SZL/@@download/ENCFF742SZL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF927OSO bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF613CHF, ENCFF675MQQ 5323354 ENCODE Processing Pipeline e9cdb0da7c6da3e723d6c3244ba63e0c https://www.encodeproject.org/files/ENCFF927OSO/@@download/ENCFF927OSO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF012IBK bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF760SPW 13123824 ENCODE Processing Pipeline cd47e9fa9af19f5df2bea679040436cc https://www.encodeproject.org/files/ENCFF012IBK/@@download/ENCFF012IBK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF760SPW bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF675MQQ, ENCFF786INL 5528998 ENCODE Processing Pipeline f1563ffd778ecbd2c8a76c787f9f4215 https://www.encodeproject.org/files/ENCFF760SPW/@@download/ENCFF760SPW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF158RQK bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF613CHF, ENCFF675MQQ, ENCFF786INL 6081913 ENCODE Processing Pipeline 0a2fbf07da32ffb9ed4c2865627946a8 https://www.encodeproject.org/files/ENCFF158RQK/@@download/ENCFF158RQK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF096PUT bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF927OSO 13066064 ENCODE Processing Pipeline fe58b0883044906ee2155cca43790b25 https://www.encodeproject.org/files/ENCFF096PUT/@@download/ENCFF096PUT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF108SNI bed narrowPeak conservative idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF158RQK, ENCFF419RSJ, ENCFF760SPW, ENCFF927OSO 329441 ENCODE Processing Pipeline d457a16cce770ca2e3d0feb73b9a09df https://www.encodeproject.org/files/ENCFF108SNI/@@download/ENCFF108SNI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF336TEJ bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF158RQK 13166986 ENCODE Processing Pipeline 0cda29eb722331eab0c5952d71f677cc https://www.encodeproject.org/files/ENCFF336TEJ/@@download/ENCFF336TEJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF171XUS bed narrowPeak optimal idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF158RQK, ENCFF419RSJ, ENCFF760SPW, ENCFF927OSO 343809 ENCODE Processing Pipeline 3ae0e6fd5de7cc5d8fc9eea989958312 https://www.encodeproject.org/files/ENCFF171XUS/@@download/ENCFF171XUS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF896KNO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF108SNI 682589 ENCODE Processing Pipeline 3b91e7f6c2eaaf55dac956c45cc6d01d https://www.encodeproject.org/files/ENCFF896KNO/@@download/ENCFF896KNO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF388VIQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF171XUS 704709 ENCODE Processing Pipeline 29865af05e74442e38a694dae0e546d0 https://www.encodeproject.org/files/ENCFF388VIQ/@@download/ENCFF388VIQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF642MQK bigWig signal p-value ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF014XIN, ENCFF703KFY 505802135 ENCODE Processing Pipeline 51697e75854772567da6b44eafac3cb1 https://www.encodeproject.org/files/ENCFF642MQK/@@download/ENCFF642MQK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF843SJG bigWig signal p-value ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF022SZB, ENCFF703KFY 434504062 ENCODE Processing Pipeline 9be6659165bda9139113118cbe23ae12 https://www.encodeproject.org/files/ENCFF843SJG/@@download/ENCFF843SJG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF668ADN bigWig fold change over control ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF022SZB, ENCFF703KFY 305786636 ENCODE Processing Pipeline 4c6d225cc73ebac7544769211d099c80 https://www.encodeproject.org/files/ENCFF668ADN/@@download/ENCFF668ADN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF997XOD bigWig signal p-value ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014XIN, ENCFF022SZB, ENCFF703KFY 598001879 ENCODE Processing Pipeline e79850aeca61b18ac8f69987597c67d5 https://www.encodeproject.org/files/ENCFF997XOD/@@download/ENCFF997XOD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF225FBZ bigWig fold change over control ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014XIN, ENCFF022SZB, ENCFF703KFY 584443774 ENCODE Processing Pipeline f8f048a1db83fe6a48c55a77d5be71a3 https://www.encodeproject.org/files/ENCFF225FBZ/@@download/ENCFF225FBZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF449DID bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF014XIN, ENCFF022SZB, ENCFF703KFY 6085605 ENCODE Processing Pipeline 6fc979a19e1eb7503d53730d4713e72f https://www.encodeproject.org/files/ENCFF449DID/@@download/ENCFF449DID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF931EYE bigWig fold change over control ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF014XIN, ENCFF703KFY 377753702 ENCODE Processing Pipeline 825c79c7d3e38f2829e2e27daf0fb215 https://www.encodeproject.org/files/ENCFF931EYE/@@download/ENCFF931EYE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF349TEE bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF014XIN, ENCFF703KFY 5564974 ENCODE Processing Pipeline e500b057792be6f6547430afa9303e78 https://www.encodeproject.org/files/ENCFF349TEE/@@download/ENCFF349TEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF375CUD bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF349TEE 13126148 ENCODE Processing Pipeline 6ad17df660d69a43e28c2a933f6697c4 https://www.encodeproject.org/files/ENCFF375CUD/@@download/ENCFF375CUD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF835LPJ bed narrowPeak optimal idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF287WRJ, ENCFF349TEE, ENCFF449DID 334695 ENCODE Processing Pipeline fc1aebabccf0ab50b0c6d56b89b23309 https://www.encodeproject.org/files/ENCFF835LPJ/@@download/ENCFF835LPJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF068AGG bed narrowPeak conservative idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF287WRJ, ENCFF349TEE, ENCFF449DID 328920 ENCODE Processing Pipeline fc4c269597ad0d914bda2a344d57b7f0 https://www.encodeproject.org/files/ENCFF068AGG/@@download/ENCFF068AGG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF313THV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF835LPJ 689955 ENCODE Processing Pipeline 967204bc49a54b8fdeee0ecebf8ce5de https://www.encodeproject.org/files/ENCFF313THV/@@download/ENCFF313THV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF287WRJ bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF022SZB, ENCFF703KFY 5325369 ENCODE Processing Pipeline aec98923b01bcecffa09d803dffb3ec5 https://www.encodeproject.org/files/ENCFF287WRJ/@@download/ENCFF287WRJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF062GZJ bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF449DID 13161922 ENCODE Processing Pipeline 75cb73880ed5ee91f95e14d2bc7b050d https://www.encodeproject.org/files/ENCFF062GZJ/@@download/ENCFF062GZJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF467PWB bigBed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WRJ 13032182 ENCODE Processing Pipeline fc0ab2702819286844267f3d41ea44fd https://www.encodeproject.org/files/ENCFF467PWB/@@download/ENCFF467PWB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF876IRW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF068AGG 680146 ENCODE Processing Pipeline 9384642874950f97a4baa2687ba2fd12 https://www.encodeproject.org/files/ENCFF876IRW/@@download/ENCFF876IRW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF588VLV fastq reads ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF095HAZ 2174517388 Michael Snyder, Stanford fddbdcdfc6d391dc7399e3ca8c8000b6 SRA:SRR6213867 https://www.encodeproject.org/files/ENCFF588VLV/@@download/ENCFF588VLV.fastq.gz Illumina HiSeq 2000 /files/ENCFF121PRL/ released low read depth, antibody characterized with exemption ENCFF095HAZ fastq reads ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF588VLV 2143608197 Michael Snyder, Stanford f8bb41bb27ce11115401c1035e8b119e SRA:SRR6213867 https://www.encodeproject.org/files/ENCFF095HAZ/@@download/ENCFF095HAZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF179UPL/ released low read depth, antibody characterized with exemption ENCFF008WZL bam unfiltered alignments ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF095HAZ, ENCFF588VLV, ENCFF807MUK 4631238217 ENCODE Processing Pipeline 6cbae413d3036c5a6293edd536d7edae https://www.encodeproject.org/files/ENCFF008WZL/@@download/ENCFF008WZL.bam hg19 released low read depth, antibody characterized with exemption ENCFF899IHZ bam alignments ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF095HAZ, ENCFF588VLV, ENCFF807MUK 3773973303 ENCODE Processing Pipeline b2dc35d2958e20df7c9b5361b8c86ade https://www.encodeproject.org/files/ENCFF899IHZ/@@download/ENCFF899IHZ.bam hg19 released low read depth, antibody characterized with exemption ENCFF619BBY bam unfiltered alignments ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF095HAZ, ENCFF588VLV, ENCFF643CGH 4634497815 ENCODE Processing Pipeline 3c46b8b65e9e84da6d56caa8880ebb3a https://www.encodeproject.org/files/ENCFF619BBY/@@download/ENCFF619BBY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF867AMO bam alignments ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF095HAZ, ENCFF588VLV, ENCFF643CGH 3778127159 ENCODE Processing Pipeline b3c071c8c0394f7915f3a119e4db49d6 https://www.encodeproject.org/files/ENCFF867AMO/@@download/ENCFF867AMO.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF591ZSK bigWig signal p-value ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF334HAL, ENCFF899IHZ 816981198 ENCODE Processing Pipeline 9b8b08539a5ed2f0347a8215302bba3a https://www.encodeproject.org/files/ENCFF591ZSK/@@download/ENCFF591ZSK.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF268PFL bigWig fold change over control ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF334HAL, ENCFF899IHZ 923745012 ENCODE Processing Pipeline 9ebc804b6ec539ecd73665416d2fbaa2 https://www.encodeproject.org/files/ENCFF268PFL/@@download/ENCFF268PFL.bigWig hg19 released low read depth, antibody characterized with exemption ENCFF854HKD bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF384ALJ 1142412 ENCODE Processing Pipeline 30d5e5a2962d3d283e294eda0d401c5a https://www.encodeproject.org/files/ENCFF854HKD/@@download/ENCFF854HKD.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF833TSX bed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF334HAL, ENCFF899IHZ 6509134 ENCODE Processing Pipeline e3812333d1f49ced5c48f4d37d476541 https://www.encodeproject.org/files/ENCFF833TSX/@@download/ENCFF833TSX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF829AUE bigBed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF833TSX 13648718 ENCODE Processing Pipeline fc32d15d0d0f96a4a0c8fc613bc3bc4a https://www.encodeproject.org/files/ENCFF829AUE/@@download/ENCFF829AUE.bigBed hg19 released low read depth, antibody characterized with exemption ENCFF384ALJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF833TSX 682910 ENCODE Processing Pipeline 32060bc34be711141392c9bd81ed44cf https://www.encodeproject.org/files/ENCFF384ALJ/@@download/ENCFF384ALJ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF509RCR bed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF209HOO, ENCFF867AMO 6571583 ENCODE Processing Pipeline 0f2c8944b869d2a56902c50453b99045 https://www.encodeproject.org/files/ENCFF509RCR/@@download/ENCFF509RCR.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF637ZDH bigWig signal p-value ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF209HOO, ENCFF867AMO 892635792 ENCODE Processing Pipeline 2c33383a0072bb4c3b24c1a9d99d1032 https://www.encodeproject.org/files/ENCFF637ZDH/@@download/ENCFF637ZDH.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF198JTS bigWig fold change over control ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF209HOO, ENCFF867AMO 920333467 ENCODE Processing Pipeline 61efda327003293e2db49710c5f96659 https://www.encodeproject.org/files/ENCFF198JTS/@@download/ENCFF198JTS.bigWig GRCh38 released low read depth, antibody characterized with exemption ENCFF860MQO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF989JUA 1168411 ENCODE Processing Pipeline 519cfd2fe1cadba82ab41a9992f9fb0a https://www.encodeproject.org/files/ENCFF860MQO/@@download/ENCFF860MQO.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF989JUA bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF509RCR 695614 ENCODE Processing Pipeline dc90d52742ee19589d8c6345cad790a7 https://www.encodeproject.org/files/ENCFF989JUA/@@download/ENCFF989JUA.bed.gz GRCh38 released low read depth, antibody characterized with exemption ENCFF283FXZ bigBed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF509RCR 13733685 ENCODE Processing Pipeline a7179b88f8ae47694279b1a2c9e86093 https://www.encodeproject.org/files/ENCFF283FXZ/@@download/ENCFF283FXZ.bigBed GRCh38 released low read depth, antibody characterized with exemption ENCFF000CCF bigBed broadPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TAG 604776 Bradley Bernstein, Broad a0d71f441b576666e709f70a917cd460 https://www.encodeproject.org/files/ENCFF000CCF/@@download/ENCFF000CCF.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000CCH bigWig signal ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CCI 170393462 Bradley Bernstein, Broad c9b9ae4cf741771200eabed07ae314eb https://www.encodeproject.org/files/ENCFF000CCH/@@download/ENCFF000CCH.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000CCI bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 1 764448351 Bradley Bernstein, Broad cff14519b9a80e18c3a5e6feade2cc1d https://www.encodeproject.org/files/ENCFF000CCI/@@download/ENCFF000CCI.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000CCP fastq reads ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1086842838 Bradley Bernstein, Broad e0b31b6f487330383c29080b94b2d8b3 https://www.encodeproject.org/files/ENCFF000CCP/@@download/ENCFF000CCP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF001TAG bed broadPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CCI 312894 Bradley Bernstein, Broad d2e578c371285096edf82d2dc493df07 https://www.encodeproject.org/files/ENCFF001TAG/@@download/ENCFF001TAG.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF705HHD bam unfiltered alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCP, ENCFF807MUK 1322471007 ENCODE Processing Pipeline ca3588bdf7d8539cb401eca533b73d36 https://www.encodeproject.org/files/ENCFF705HHD/@@download/ENCFF705HHD.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF300GIQ bam unfiltered alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF890OZT 1636525759 ENCODE Processing Pipeline e5ea81756e0cec3d59a1db4dca97cb62 https://www.encodeproject.org/files/ENCFF300GIQ/@@download/ENCFF300GIQ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF929ULB bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF890OZT 1094075945 ENCODE Processing Pipeline 93b0ce29bdd11a6d0528fb9f647e74bd https://www.encodeproject.org/files/ENCFF929ULB/@@download/ENCFF929ULB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF137ZOU bam unfiltered alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF890OZT 1646041197 ENCODE Processing Pipeline ca6680a5330b8214d51b430e6820d676 https://www.encodeproject.org/files/ENCFF137ZOU/@@download/ENCFF137ZOU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF657YTG bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCP, ENCFF643CGH 280121613 ENCODE Processing Pipeline 30a0f4c3559ebe5b8b96c9fe336f5bb7 https://www.encodeproject.org/files/ENCFF657YTG/@@download/ENCFF657YTG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF062OKC bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCP, ENCFF807MUK 280530747 ENCODE Processing Pipeline fb418d4b5ebff02f851b63a88d76a35d https://www.encodeproject.org/files/ENCFF062OKC/@@download/ENCFF062OKC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF194JUV bam unfiltered alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCP, ENCFF643CGH 1331048665 ENCODE Processing Pipeline a605f41a169c5a2b1ba36515616ea117 https://www.encodeproject.org/files/ENCFF194JUV/@@download/ENCFF194JUV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF180WVL bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF890OZT 1093449653 ENCODE Processing Pipeline 72dc83a97a52f17921fa1de433079a73 https://www.encodeproject.org/files/ENCFF180WVL/@@download/ENCFF180WVL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF272DVW bigWig signal p-value ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF062OKC, ENCFF574XYY 263297685 ENCODE Processing Pipeline 0ae7174b1030e82ac87559db2d58db2e https://www.encodeproject.org/files/ENCFF272DVW/@@download/ENCFF272DVW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF888NNI bigBed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF809XWY 13111992 ENCODE Processing Pipeline d9a38e9d03392a1bd6488bfc5bfef9c6 https://www.encodeproject.org/files/ENCFF888NNI/@@download/ENCFF888NNI.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF590XAK bigWig fold change over control ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF180WVL, ENCFF392XRJ, ENCFF829HZY 660798132 ENCODE Processing Pipeline 3a69af439cb727b540835c954b38430e https://www.encodeproject.org/files/ENCFF590XAK/@@download/ENCFF590XAK.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF561SMW bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF657YTG 3404294 ENCODE Processing Pipeline 38f811d18f55a73ed7ac910a30309951 https://www.encodeproject.org/files/ENCFF561SMW/@@download/ENCFF561SMW.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF916PYZ bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF180WVL, ENCFF392XRJ, ENCFF657YTG, ENCFF829HZY 6366302 ENCODE Processing Pipeline bf2e90d94e46bf00208f7d68493d148d https://www.encodeproject.org/files/ENCFF916PYZ/@@download/ENCFF916PYZ.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF825JBE bigWig signal p-value ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF657YTG 295888525 ENCODE Processing Pipeline 15cea56d18430da7a2b1f138bf159b18 https://www.encodeproject.org/files/ENCFF825JBE/@@download/ENCFF825JBE.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF289NDL bigWig fold change over control ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF657YTG 139048868 ENCODE Processing Pipeline a1a9e987a72a92dfd683c1373d682028 https://www.encodeproject.org/files/ENCFF289NDL/@@download/ENCFF289NDL.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF789FVN bigWig signal p-value ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF180WVL, ENCFF392XRJ, ENCFF657YTG, ENCFF829HZY 731938652 ENCODE Processing Pipeline 6dc5f86aaa471c92b1aa18080aca3975 https://www.encodeproject.org/files/ENCFF789FVN/@@download/ENCFF789FVN.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF719OEX bigWig fold change over control ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 653101184 ENCODE Processing Pipeline 44e2b129169c64b48418fcd0ec7e40a2 https://www.encodeproject.org/files/ENCFF719OEX/@@download/ENCFF719OEX.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF757GUM bigBed narrowPeak conservative idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF019XTP 115550 ENCODE Processing Pipeline e431fb90de865485cc9102dc644e227f https://www.encodeproject.org/files/ENCFF757GUM/@@download/ENCFF757GUM.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF507XOB bed narrowPeak optimal idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF692UFO, ENCFF731WWO, ENCFF809XWY 55253 ENCODE Processing Pipeline cb67e6e280eb53c71e244ba182a543c1 https://www.encodeproject.org/files/ENCFF507XOB/@@download/ENCFF507XOB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF208PNQ bigWig fold change over control ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF180WVL, ENCFF392XRJ, ENCFF657YTG, ENCFF829HZY 737435742 ENCODE Processing Pipeline 4ebbb73b569248cbb526b24fe93d3fd7 https://www.encodeproject.org/files/ENCFF208PNQ/@@download/ENCFF208PNQ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF857HZS bigWig fold change over control ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF062OKC, ENCFF574XYY 137145560 ENCODE Processing Pipeline 038e17263ddad12877d5f177dead5d62 https://www.encodeproject.org/files/ENCFF857HZS/@@download/ENCFF857HZS.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF731WWO bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF062OKC, ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 6372507 ENCODE Processing Pipeline 21bc2a7a42ab7cd2318940772423668b https://www.encodeproject.org/files/ENCFF731WWO/@@download/ENCFF731WWO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF391KBW bigBed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF692UFO 9273998 ENCODE Processing Pipeline b98cd445944be1bf1adcc4166d0dd8f0 https://www.encodeproject.org/files/ENCFF391KBW/@@download/ENCFF391KBW.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF011NKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF440XZI 197509 ENCODE Processing Pipeline 55efce803442c0ca9a81cea86d19406a https://www.encodeproject.org/files/ENCFF011NKJ/@@download/ENCFF011NKJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF422DRO bigBed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF561SMW 7046472 ENCODE Processing Pipeline dc6b8200b81f16e44332dcf39edf50d2 https://www.encodeproject.org/files/ENCFF422DRO/@@download/ENCFF422DRO.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF440XZI bed narrowPeak optimal idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF561SMW, ENCFF760IKN, ENCFF916PYZ 53769 ENCODE Processing Pipeline e3df1a3201456822b691a1f4b3c56cdf https://www.encodeproject.org/files/ENCFF440XZI/@@download/ENCFF440XZI.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF930BGI bigWig signal p-value ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 675404914 ENCODE Processing Pipeline e79db533f5e1d39ea412f6a6e1d40190 https://www.encodeproject.org/files/ENCFF930BGI/@@download/ENCFF930BGI.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF177SRA bigWig signal p-value ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF062OKC, ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 727913329 ENCODE Processing Pipeline 58694477ffda51c7fb58e1814bbf134e https://www.encodeproject.org/files/ENCFF177SRA/@@download/ENCFF177SRA.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF317GED bigWig fold change over control ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF062OKC, ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 732176555 ENCODE Processing Pipeline c23c2fcfc91633a534fca5f2dcfebf39 https://www.encodeproject.org/files/ENCFF317GED/@@download/ENCFF317GED.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF809XWY bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 6326921 ENCODE Processing Pipeline fcc722041b99b0caa4b16f8e77572445 https://www.encodeproject.org/files/ENCFF809XWY/@@download/ENCFF809XWY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF360IRO bigBed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF731WWO 13109837 ENCODE Processing Pipeline 5117430dabdcf3fbe362514a7a209f4e https://www.encodeproject.org/files/ENCFF360IRO/@@download/ENCFF360IRO.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF019XTP bed narrowPeak conservative idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF692UFO, ENCFF731WWO, ENCFF809XWY 17953 ENCODE Processing Pipeline 5044de925f4f9c87011fc855115f1bbc https://www.encodeproject.org/files/ENCFF019XTP/@@download/ENCFF019XTP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF174LTF bigWig signal p-value ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF180WVL, ENCFF392XRJ, ENCFF829HZY 687878684 ENCODE Processing Pipeline 65679cccce995707ed6eadc6cfc8ea2b https://www.encodeproject.org/files/ENCFF174LTF/@@download/ENCFF174LTF.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF760IKN bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF180WVL, ENCFF392XRJ, ENCFF829HZY 6329275 ENCODE Processing Pipeline 3503149bd9fe5511729c1bd28ed26393 https://www.encodeproject.org/files/ENCFF760IKN/@@download/ENCFF760IKN.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF795GUH bigBed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF760IKN 13118885 ENCODE Processing Pipeline 295a45b8eb1e7e5b77abf92de0580b3c https://www.encodeproject.org/files/ENCFF795GUH/@@download/ENCFF795GUH.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF692UFO bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF062OKC, ENCFF574XYY 3725047 ENCODE Processing Pipeline 0ddcc3900c596eb90ac5d29d5f721899 https://www.encodeproject.org/files/ENCFF692UFO/@@download/ENCFF692UFO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF385HPA bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF507XOB 200063 ENCODE Processing Pipeline 04fe8bc884cc1aed6e0f4030bc66ddf6 https://www.encodeproject.org/files/ENCFF385HPA/@@download/ENCFF385HPA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF031KXX bigBed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF916PYZ 13120907 ENCODE Processing Pipeline a2f44e990f00deb995ad0ddfa5648568 https://www.encodeproject.org/files/ENCFF031KXX/@@download/ENCFF031KXX.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF674RBL bed narrowPeak conservative idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF561SMW, ENCFF760IKN, ENCFF916PYZ 18299 ENCODE Processing Pipeline e2a4f715ebcc0db2366f4cdffdc9c15c https://www.encodeproject.org/files/ENCFF674RBL/@@download/ENCFF674RBL.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF545UCE bigBed narrowPeak conservative idr thresholded peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF674RBL 117380 ENCODE Processing Pipeline 31489fe00a0549efb79dddbf359188e3 https://www.encodeproject.org/files/ENCFF545UCE/@@download/ENCFF545UCE.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF509DMD fastq reads ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 1 30 single-ended 558980305 Bradley Bernstein, Broad 000b7ba9d0b023da18494f323dd839f6 https://www.encodeproject.org/files/ENCFF509DMD/@@download/ENCFF509DMD.fastq.gz Illumina HiSeq 2500 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, missing controlled_by, severe bottlenecking ENCFF890OZT fastq reads ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 1 76 single-ended 2150231435 Bradley Bernstein, Broad 0a58ac8eaff2cf17a535d5e579625597 https://www.encodeproject.org/files/ENCFF890OZT/@@download/ENCFF890OZT.fastq.gz Illumina HiSeq 2500 /files/ENCFF283HQV/, /files/ENCFF994FIB/ released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, inconsistent control read length, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000XNS bam alignments ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XNV 464638127 Michael Snyder, Stanford a4596c04fcf6a961d2711b7ecfb3dccd https://www.encodeproject.org/files/ENCFF000XNS/@@download/ENCFF000XNS.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNT bam alignments ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XNX 595164982 Michael Snyder, Stanford 1eb7bfa3d82540949a5858e84a7c5716 https://www.encodeproject.org/files/ENCFF000XNT/@@download/ENCFF000XNT.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNU bigBed narrowPeak peaks ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJR 1502777 Michael Snyder, Stanford 7f47493274c181f7b6eb76020840e8dc https://www.encodeproject.org/files/ENCFF000XNU/@@download/ENCFF000XNU.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XNV fastq reads ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 945925837 Michael Snyder, Stanford 0bec6e15af7ef2633e223cbe6b8dab92 https://www.encodeproject.org/files/ENCFF000XNV/@@download/ENCFF000XNV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XNX fastq reads ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1190352008 Michael Snyder, Stanford 9f7ee119e7b1ac0f0560303b1bddce42 https://www.encodeproject.org/files/ENCFF000XNX/@@download/ENCFF000XNX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XNZ bigWig signal ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 404162863 Michael Snyder, Stanford 0dc8d15cf32084cc2d49e3711bbb7468 https://www.encodeproject.org/files/ENCFF000XNZ/@@download/ENCFF000XNZ.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001VJR bed narrowPeak peaks ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 666619 Michael Snyder, Stanford 69d3ad9abac6162230b784f2e4e3dd56 https://www.encodeproject.org/files/ENCFF001VJR/@@download/ENCFF001VJR.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CTP bed narrowPeak optimal idr thresholded peaks ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 181234 ENCODE Consortium Analysis Working Group 5dad024c53e1b5eac7fb473933432908 https://www.encodeproject.org/files/ENCFF002CTP/@@download/ENCFF002CTP.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF358ZNG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTP 505573 ENCODE Consortium 725f6e09c9140221721e2b2a9c87c3a9 https://www.encodeproject.org/files/ENCFF358ZNG/@@download/ENCFF358ZNG.bigBed hg19 released low read length biological replicates with identical biosample ENCFF252MDF fastq reads ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 1 76 single-ended 1782312730 Bradley Bernstein, Broad a636207b2e2b47746b0a0fb9bb87cb03 https://www.encodeproject.org/files/ENCFF252MDF/@@download/ENCFF252MDF.fastq.gz Illumina HiSeq 2500 /files/ENCFF009GEU/, /files/ENCFF046WYC/, /files/ENCFF318JDQ/, /files/ENCFF494TSO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF807RJJ fastq reads ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 1 76 single-ended 1785211090 Bradley Bernstein, Broad ed4ceb4c7aa7f03cde1e5990baaff916 https://www.encodeproject.org/files/ENCFF807RJJ/@@download/ENCFF807RJJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF009GEU/, /files/ENCFF046WYC/, /files/ENCFF318JDQ/, /files/ENCFF494TSO/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF273CUH bam redacted alignments ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 76 ENCFF252MDF, ENCFF807MUK, ENCFF807RJJ 649785671 ENCODE Processing Pipeline acceaf72c37325e25cc72f0a8611645f https://www.encodeproject.org/files/ENCFF273CUH/@@download/ENCFF273CUH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF442LFX bam redacted unfiltered alignments ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 76 ENCFF252MDF, ENCFF807MUK, ENCFF807RJJ 901317096 ENCODE Processing Pipeline d370095c871c1b59fd833d285ffcd8b0 https://www.encodeproject.org/files/ENCFF442LFX/@@download/ENCFF442LFX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF949KAW bam redacted alignments ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 76 ENCFF252MDF, ENCFF643CGH, ENCFF807RJJ 650522945 ENCODE Processing Pipeline 37f54ccacc2aa064eab6d2f957c22614 https://www.encodeproject.org/files/ENCFF949KAW/@@download/ENCFF949KAW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF374UMR bam redacted unfiltered alignments ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 76 ENCFF252MDF, ENCFF643CGH, ENCFF807RJJ 910887310 ENCODE Processing Pipeline 000d3b201cdb59de91709f5141b04d7e https://www.encodeproject.org/files/ENCFF374UMR/@@download/ENCFF374UMR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF894NGI bigWig signal p-value ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF273CUH, ENCFF638AQQ 874483067 ENCODE Processing Pipeline 6d768ff4449e92c71ce28816aeede635 https://www.encodeproject.org/files/ENCFF894NGI/@@download/ENCFF894NGI.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF484KKN bed narrowPeak peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF273CUH, ENCFF638AQQ 5835324 ENCODE Processing Pipeline ad4498a66795a909cdf6783ec83e7f56 https://www.encodeproject.org/files/ENCFF484KKN/@@download/ENCFF484KKN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF087RIC bigWig fold change over control ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF408ECK, ENCFF949KAW 870760384 ENCODE Processing Pipeline fe0982edf9f3b79f649b3b893011ba8e https://www.encodeproject.org/files/ENCFF087RIC/@@download/ENCFF087RIC.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF589UQT bigBed narrowPeak peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF484KKN 13612353 ENCODE Processing Pipeline 7ff3e636cdc4f14a1d6b979b5036764c https://www.encodeproject.org/files/ENCFF589UQT/@@download/ENCFF589UQT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF384IPL bigWig signal p-value ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF408ECK, ENCFF949KAW 863740283 ENCODE Processing Pipeline 038ca62bab84eafa8e9c3f2a8fcedf53 https://www.encodeproject.org/files/ENCFF384IPL/@@download/ENCFF384IPL.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF505RMN bigWig fold change over control ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF273CUH, ENCFF638AQQ 885775475 ENCODE Processing Pipeline 952b074323e87e4bbe5c560e525461ba https://www.encodeproject.org/files/ENCFF505RMN/@@download/ENCFF505RMN.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF653LFN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF509NRY 989197 ENCODE Processing Pipeline c6c60925c1cfd1862c2437fc0b5a6c59 https://www.encodeproject.org/files/ENCFF653LFN/@@download/ENCFF653LFN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF509NRY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF289MOQ, ENCFF419RSJ 561349 ENCODE Processing Pipeline 092b5b72e7c1f4b4c3877021963ce10c https://www.encodeproject.org/files/ENCFF509NRY/@@download/ENCFF509NRY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF223CEU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF001TDO, ENCFF484KKN 548576 ENCODE Processing Pipeline 462c01acda82810716515e3fe157b75c https://www.encodeproject.org/files/ENCFF223CEU/@@download/ENCFF223CEU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF964FJP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF223CEU 965682 ENCODE Processing Pipeline c0a927f613476f8d0c1813bf818ef286 https://www.encodeproject.org/files/ENCFF964FJP/@@download/ENCFF964FJP.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF289MOQ bed narrowPeak peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF408ECK, ENCFF949KAW 5874400 ENCODE Processing Pipeline c7e45f45c2a30fc9d1a8e8376c8aa08c https://www.encodeproject.org/files/ENCFF289MOQ/@@download/ENCFF289MOQ.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF356ALU bigBed narrowPeak peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF289MOQ 13669706 ENCODE Processing Pipeline 302595f1dbc2ba74d696a531039c396f https://www.encodeproject.org/files/ENCFF356ALU/@@download/ENCFF356ALU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF000ZKP bam alignments ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000ZLE 195648748 Peggy Farnham, USC f547d5c526bf94abf9a15efccdc2fce9 https://www.encodeproject.org/files/ENCFF000ZKP/@@download/ENCFF000ZKP.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000ZKR bigBed narrowPeak peaks ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VQG 951301 Peggy Farnham, USC 3ebd2b2c8af5c1b0fd4c006667a81c0c https://www.encodeproject.org/files/ENCFF000ZKR/@@download/ENCFF000ZKR.bigBed hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000ZKS bam alignments ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000ZKT, ENCFF000ZKV 991185470 Peggy Farnham, USC d07f215008868444d2ecc83a36d4ef39 https://www.encodeproject.org/files/ENCFF000ZKS/@@download/ENCFF000ZKS.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000ZKT fastq reads ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1417460577 Peggy Farnham, USC da1f076debf83817cfa0dda73a8aaa24 https://www.encodeproject.org/files/ENCFF000ZKT/@@download/ENCFF000ZKT.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHM/ released low read length, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000ZKW bigWig signal ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 430257765 Peggy Farnham, USC 3dce0cc2d1fa756ec30b986d1978d605 https://www.encodeproject.org/files/ENCFF000ZKW/@@download/ENCFF000ZKW.bigWig hg19 released low read length, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ZLE fastq reads ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 1 1 32 single-ended 774007803 Peggy Farnham, USC d834e5f026c1d68631cc3a3bef42f420 https://www.encodeproject.org/files/ENCFF000ZLE/@@download/ENCFF000ZLE.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHL/ released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF001VQG bed narrowPeak peaks ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 397863 Peggy Farnham, USC b9638f80eace067466fe530afe663f97 https://www.encodeproject.org/files/ENCFF001VQG/@@download/ENCFF001VQG.bed.gz hg19 released low read length, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CZK bed narrowPeak optimal idr thresholded peaks ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 309354 ENCODE Consortium Analysis Working Group f033be2179122e4ba03dac8731653c5b https://www.encodeproject.org/files/ENCFF002CZK/@@download/ENCFF002CZK.bed.gz hg19 released low read length, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ZKV fastq reads ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 2 1 32 single-ended 595030884 Peggy Farnham, USC 72f97d049f3e4dd605309ec65134fbe0 https://www.encodeproject.org/files/ENCFF000ZKV/@@download/ENCFF000ZKV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VHM/ released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF093ETA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CZK 828246 ENCODE Consortium 342c2cfc57334ca55a8b4dc3a962f77f https://www.encodeproject.org/files/ENCFF093ETA/@@download/ENCFF093ETA.bigBed hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF187LLF bam unfiltered alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EHI, ENCFF002EHK, ENCFF807MUK 5931770220 ENCODE Processing Pipeline a5139e02f0beec861120f2e08507e521 https://www.encodeproject.org/files/ENCFF187LLF/@@download/ENCFF187LLF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002EHI fastq reads ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 2 ENCFF002EHK 3028346880 Michael Snyder, Stanford a860b1f41197d39c9c1040dde4847de9 https://www.encodeproject.org/files/ENCFF002EHI/@@download/ENCFF002EHI.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002EHK fastq reads ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 1 100 paired-ended 1 ENCFF002EHI 2995668418 Michael Snyder, Stanford 8324487c52162841b4309b3b605fe979 https://www.encodeproject.org/files/ENCFF002EHK/@@download/ENCFF002EHK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002EHL fastq reads ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 1 ENCFF002EHM 3067223472 Michael Snyder, Stanford 5a1e600633ce756b1a5fb2a621d568fb https://www.encodeproject.org/files/ENCFF002EHL/@@download/ENCFF002EHL.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002EHM fastq reads ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 1 100 paired-ended 2 ENCFF002EHL 3097773817 Michael Snyder, Stanford 70cff586a59617d6d2ed8b9c980e97cd https://www.encodeproject.org/files/ENCFF002EHM/@@download/ENCFF002EHM.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF632LAG bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF002EHI, ENCFF002EHK, ENCFF807MUK 4177760148 ENCODE Processing Pipeline 29de6f4d838fb1fcac22b5770ce5a3e3 https://www.encodeproject.org/files/ENCFF632LAG/@@download/ENCFF632LAG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF699KPK fastq reads ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 2 ENCFF230ANA 2383770614 Michael Snyder, Stanford 5fb28e4e84c1125f36bb34bf6cc93fd9 https://www.encodeproject.org/files/ENCFF699KPK/@@download/ENCFF699KPK.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF230ANA fastq reads ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 2 101 paired-ended 1 ENCFF699KPK 2386756079 Michael Snyder, Stanford 72f6dd3c57431cd245ed226547094792 https://www.encodeproject.org/files/ENCFF230ANA/@@download/ENCFF230ANA.fastq.gz Illumina HiSeq 2000 /files/ENCFF002EFM/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF823MVP bam unfiltered alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EHI, ENCFF002EHK, ENCFF643CGH 5932485589 ENCODE Processing Pipeline d99ea62e524c8bac18221f9afbc4d21e https://www.encodeproject.org/files/ENCFF823MVP/@@download/ENCFF823MVP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF756RTB bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EHI, ENCFF002EHK, ENCFF643CGH 4179104793 ENCODE Processing Pipeline f4436f8390055bd1cdcaa14eeba4e88a https://www.encodeproject.org/files/ENCFF756RTB/@@download/ENCFF756RTB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF265XZZ bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHL, ENCFF002EHM, ENCFF230ANA, ENCFF643CGH, ENCFF699KPK 3468357648 ENCODE Processing Pipeline 4b2be1fa5d207c97f3deac3958ce2b61 https://www.encodeproject.org/files/ENCFF265XZZ/@@download/ENCFF265XZZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF638MHT bam unfiltered alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHL, ENCFF002EHM, ENCFF230ANA, ENCFF643CGH, ENCFF699KPK 9386221832 ENCODE Processing Pipeline 5c7a73cfb4c3b8f8c5f35aa578cf94f7 https://www.encodeproject.org/files/ENCFF638MHT/@@download/ENCFF638MHT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF783FCX bam unfiltered alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHL, ENCFF002EHM, ENCFF230ANA, ENCFF699KPK, ENCFF807MUK 9397637737 ENCODE Processing Pipeline d8c8511298a6d9fc0d7761c6aab497ef https://www.encodeproject.org/files/ENCFF783FCX/@@download/ENCFF783FCX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF380JLB bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHL, ENCFF002EHM, ENCFF230ANA, ENCFF699KPK, ENCFF807MUK 3467252660 ENCODE Processing Pipeline 105442f803f67340e153578854068118 https://www.encodeproject.org/files/ENCFF380JLB/@@download/ENCFF380JLB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF152MRP bigWig signal p-value ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF380JLB, ENCFF980CFV 1581531873 ENCODE Processing Pipeline 3ffd402e7c1675cb6bdbd4821fa5b6e5 https://www.encodeproject.org/files/ENCFF152MRP/@@download/ENCFF152MRP.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF683BHQ bigWig signal p-value ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF380JLB, ENCFF632LAG, ENCFF980CFV 2065420850 ENCODE Processing Pipeline ff75b2eb327071f24a81e01ea532c6d1 https://www.encodeproject.org/files/ENCFF683BHQ/@@download/ENCFF683BHQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF056PXG bigWig fold change over control ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF632LAG, ENCFF980CFV 1532376901 ENCODE Processing Pipeline 10b948174763bf230d0663f0f6858eae https://www.encodeproject.org/files/ENCFF056PXG/@@download/ENCFF056PXG.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF051SGA bigWig fold change over control ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF380JLB, ENCFF632LAG, ENCFF980CFV 2090235265 ENCODE Processing Pipeline 7594d1b4006a3e3def3287b2da11f900 https://www.encodeproject.org/files/ENCFF051SGA/@@download/ENCFF051SGA.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF259PXQ bigWig fold change over control ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF380JLB, ENCFF980CFV 1497127395 ENCODE Processing Pipeline c6b4027583e5f0ab57bec037b1c99102 https://www.encodeproject.org/files/ENCFF259PXQ/@@download/ENCFF259PXQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF776IDV bigWig signal p-value ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF632LAG, ENCFF980CFV 1738824646 ENCODE Processing Pipeline fbb629ca2e6df397eefd6a9cb476ffb5 https://www.encodeproject.org/files/ENCFF776IDV/@@download/ENCFF776IDV.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF946QHN bigBed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF496NEE 13510296 ENCODE Processing Pipeline 7d84eb9ab9c021d89fca93e0a21f90fa https://www.encodeproject.org/files/ENCFF946QHN/@@download/ENCFF946QHN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF991ZKA bigBed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF900WDP 13596646 ENCODE Processing Pipeline 64b35f1b84b7c99002d35fe7c05ff8a4 https://www.encodeproject.org/files/ENCFF991ZKA/@@download/ENCFF991ZKA.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF618DDO bed narrowPeak optimal idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF496NEE, ENCFF762DPO, ENCFF900WDP 896089 ENCODE Processing Pipeline dd513e682e5bfda211bce2fc3140257c https://www.encodeproject.org/files/ENCFF618DDO/@@download/ENCFF618DDO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF900WDP bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF380JLB, ENCFF980CFV 6748695 ENCODE Processing Pipeline dfdfe4f30e1f0cbf721b7e1793fa82c0 https://www.encodeproject.org/files/ENCFF900WDP/@@download/ENCFF900WDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF762DPO bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF632LAG, ENCFF980CFV 6710682 ENCODE Processing Pipeline a3a66b6bd31e940c5fd8b6a3bf81c923 https://www.encodeproject.org/files/ENCFF762DPO/@@download/ENCFF762DPO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF496NEE bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF080XQT, ENCFF380JLB, ENCFF632LAG, ENCFF980CFV 7025650 ENCODE Processing Pipeline 4ec4eaa848d9f403af137a400ce93a2a https://www.encodeproject.org/files/ENCFF496NEE/@@download/ENCFF496NEE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF438LUG bigBed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF762DPO 13451207 ENCODE Processing Pipeline 80c77cfbcbc85015df5bb00cb7a4fa45 https://www.encodeproject.org/files/ENCFF438LUG/@@download/ENCFF438LUG.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF621VZQ bed narrowPeak conservative idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF001TDO, ENCFF496NEE, ENCFF762DPO, ENCFF900WDP 894879 ENCODE Processing Pipeline 21c09e5ebd2bf496fe9dcc69d43566d4 https://www.encodeproject.org/files/ENCFF621VZQ/@@download/ENCFF621VZQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF228BZH bigBed narrowPeak conservative idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF621VZQ 1669952 ENCODE Processing Pipeline b4f71a2bcf262ec9d39aae52090ce307 https://www.encodeproject.org/files/ENCFF228BZH/@@download/ENCFF228BZH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF660CRB bigBed narrowPeak optimal idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF618DDO 1686304 ENCODE Processing Pipeline 747b01bb1ea55f8ec58c26f0d61f13f4 https://www.encodeproject.org/files/ENCFF660CRB/@@download/ENCFF660CRB.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456RLN bigWig signal p-value ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX, ENCFF756RTB 1853720584 ENCODE Processing Pipeline 85370f3a919bb0e79b4420c36af3815f https://www.encodeproject.org/files/ENCFF456RLN/@@download/ENCFF456RLN.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF910YVV bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX 6736937 ENCODE Processing Pipeline 45bbbadb1c2c7f07de426b8b2ac7d77b https://www.encodeproject.org/files/ENCFF910YVV/@@download/ENCFF910YVV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF496FKH bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF756RTB 6727617 ENCODE Processing Pipeline 12b20cf1ed8da5375a75848e16f4ca6b https://www.encodeproject.org/files/ENCFF496FKH/@@download/ENCFF496FKH.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF736LAA bigBed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF496FKH 13480717 ENCODE Processing Pipeline a702dc56b8f355e602ab077315b2d346 https://www.encodeproject.org/files/ENCFF736LAA/@@download/ENCFF736LAA.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF916YCT bigWig signal p-value ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX 1469877261 ENCODE Processing Pipeline 12827cd099e29866aceebb6d5a866c9a https://www.encodeproject.org/files/ENCFF916YCT/@@download/ENCFF916YCT.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF802FLB bigWig fold change over control ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX 1515639465 ENCODE Processing Pipeline 95248b7b5d8a87b8a99d58ce7968c231 https://www.encodeproject.org/files/ENCFF802FLB/@@download/ENCFF802FLB.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF941NMY bigWig signal p-value ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF756RTB 1632654726 ENCODE Processing Pipeline 884bba024251ac97fe19e7392176526c https://www.encodeproject.org/files/ENCFF941NMY/@@download/ENCFF941NMY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF968KYZ bigWig fold change over control ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF056HWK, ENCFF396QTX, ENCFF756RTB 1537063841 ENCODE Processing Pipeline ecca8175142b75d4988deee938349346 https://www.encodeproject.org/files/ENCFF968KYZ/@@download/ENCFF968KYZ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF911CVX bigBed narrowPeak conservative idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF761CZS 1668355 ENCODE Processing Pipeline 85528dbc4d200237d6de330ac4912f83 https://www.encodeproject.org/files/ENCFF911CVX/@@download/ENCFF911CVX.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF441QBK bigBed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF964BWE 13486885 ENCODE Processing Pipeline 96719a3fecdb52642fbe4ced328558d2 https://www.encodeproject.org/files/ENCFF441QBK/@@download/ENCFF441QBK.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF761CZS bed narrowPeak conservative idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF496FKH, ENCFF910YVV, ENCFF964BWE 895942 ENCODE Processing Pipeline f66390d829a98ba0b2535c3eb255b6db https://www.encodeproject.org/files/ENCFF761CZS/@@download/ENCFF761CZS.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF557KXD bigBed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF910YVV 13594918 ENCODE Processing Pipeline 07cf9908abb14a7f538565987351c2d1 https://www.encodeproject.org/files/ENCFF557KXD/@@download/ENCFF557KXD.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF372JOV bed narrowPeak optimal idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF419RSJ, ENCFF496FKH, ENCFF910YVV, ENCFF964BWE 896273 ENCODE Processing Pipeline 16c4bdc137d2b00ef9f77a1acb9d6f86 https://www.encodeproject.org/files/ENCFF372JOV/@@download/ENCFF372JOV.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF182VZV bigWig fold change over control ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX, ENCFF756RTB 2097515720 ENCODE Processing Pipeline a93f5349f777d14b945e1c039bbf195a https://www.encodeproject.org/files/ENCFF182VZV/@@download/ENCFF182VZV.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF964BWE bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF056HWK, ENCFF265XZZ, ENCFF396QTX, ENCFF756RTB 7002942 ENCODE Processing Pipeline c5f29a4c1e44ebcfdd120b45ccf87961 https://www.encodeproject.org/files/ENCFF964BWE/@@download/ENCFF964BWE.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF412JZS bigBed narrowPeak optimal idr thresholded peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1, 2 ENCFF372JOV 1680563 ENCODE Processing Pipeline cf3d086b01f7ce029fbc7e64784e37d4 https://www.encodeproject.org/files/ENCFF412JZS/@@download/ENCFF412JZS.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF000PZR bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QAD 724967517 Richard Myers, HAIB 44933e7b898c45a05c028fa556fe6df5 https://www.encodeproject.org/files/ENCFF000PZR/@@download/ENCFF000PZR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000PZS bigBed broadPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJV 277544 Richard Myers, HAIB c6ff6501ac73e183d411ed92b9b9478d https://www.encodeproject.org/files/ENCFF000PZS/@@download/ENCFF000PZS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000PZT bigBed broadPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJW 412886 Richard Myers, HAIB 05c16e30e01e5049f60565228351800f https://www.encodeproject.org/files/ENCFF000PZT/@@download/ENCFF000PZT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000PZU bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QAG 887356958 Richard Myers, HAIB a7f1d54b0ba75fe2d39fe2f15f27e12c https://www.encodeproject.org/files/ENCFF000PZU/@@download/ENCFF000PZU.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000PZW bigWig raw signal ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 9304110 Richard Myers, HAIB 82774d4abfd3d4eaea053677cc62b0d5 https://www.encodeproject.org/files/ENCFF000PZW/@@download/ENCFF000PZW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000PZX bigWig raw signal ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 14335386 Richard Myers, HAIB 342b5a20b68cf59da04e830d15fcfb81 https://www.encodeproject.org/files/ENCFF000PZX/@@download/ENCFF000PZX.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF000QAD fastq reads ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 639416588 Richard Myers, HAIB 41f21840663efa4d30658feb461bd82e https://www.encodeproject.org/files/ENCFF000QAD/@@download/ENCFF000QAD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QAG fastq reads ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 842080084 Richard Myers, HAIB d5ee5136c9faa9f506d3a6aa1de370c6 https://www.encodeproject.org/files/ENCFF000QAG/@@download/ENCFF000QAG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF001UJV bed broadPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 1 130970 Richard Myers, HAIB ec22eab1c9937560e7edbf6f3ad4823e https://www.encodeproject.org/files/ENCFF001UJV/@@download/ENCFF001UJV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJW bed broadPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 1 216089 Richard Myers, HAIB bf4270991ba79f1639f996dfa4db6949 https://www.encodeproject.org/files/ENCFF001UJW/@@download/ENCFF001UJW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002CLX bed narrowPeak optimal idr thresholded peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 212269 ENCODE Consortium Analysis Working Group 351582bb9b47db34b6c4e31180a91d50 https://www.encodeproject.org/files/ENCFF002CLX/@@download/ENCFF002CLX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF360UPF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLX 517062 ENCODE Consortium dca239eafae13672688e4cfc228c637f https://www.encodeproject.org/files/ENCFF360UPF/@@download/ENCFF360UPF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF906ZOM bam unfiltered alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAD, ENCFF643CGH 878463243 ENCODE Processing Pipeline 39cabd1b32442a256bf0e5f03d6b3bfc https://www.encodeproject.org/files/ENCFF906ZOM/@@download/ENCFF906ZOM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF401KIO bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAD, ENCFF643CGH 487812812 ENCODE Processing Pipeline 8531a957858f31e389f85b8844b2923c https://www.encodeproject.org/files/ENCFF401KIO/@@download/ENCFF401KIO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF639FFA bam unfiltered alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAG, ENCFF643CGH 1116340109 ENCODE Processing Pipeline cad8d73804fb0eb06cfc0507cf15a8e9 https://www.encodeproject.org/files/ENCFF639FFA/@@download/ENCFF639FFA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF398SXO bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAG, ENCFF643CGH 593850793 ENCODE Processing Pipeline 88209b545cbda3c0e4ec8efa5786855a https://www.encodeproject.org/files/ENCFF398SXO/@@download/ENCFF398SXO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF093QSS bam unfiltered alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAD, ENCFF807MUK 876794946 ENCODE Processing Pipeline 77836f583589c13544b784b03fc1f399 https://www.encodeproject.org/files/ENCFF093QSS/@@download/ENCFF093QSS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF006UXO bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAD, ENCFF807MUK 488117088 ENCODE Processing Pipeline 4068c0f0a3a9ae9ec765fb3bb351fbdd https://www.encodeproject.org/files/ENCFF006UXO/@@download/ENCFF006UXO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF364BDB bam unfiltered alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAG, ENCFF807MUK 1114739788 ENCODE Processing Pipeline 94f4a7f864f97dd4fa3c823ace992639 https://www.encodeproject.org/files/ENCFF364BDB/@@download/ENCFF364BDB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF468AKT bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAG, ENCFF807MUK 594261500 ENCODE Processing Pipeline 2a361fc67c68b5ce356d2d4892d8e622 https://www.encodeproject.org/files/ENCFF468AKT/@@download/ENCFF468AKT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF136XEI bigWig signal p-value ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401KIO, ENCFF772PJM 214353811 ENCODE Processing Pipeline c4cf495d4eb38c52d73035562a7b5dc0 https://www.encodeproject.org/files/ENCFF136XEI/@@download/ENCFF136XEI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF348XLA bigWig signal p-value ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF398SXO, ENCFF772PJM 206940532 ENCODE Processing Pipeline 7a3867e7c4742a1633ed08d67b34f7b1 https://www.encodeproject.org/files/ENCFF348XLA/@@download/ENCFF348XLA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF151QKU bigWig signal p-value ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF398SXO, ENCFF401KIO, ENCFF772PJM 188002672 ENCODE Processing Pipeline c64ed3c8ca120d5496dc416e30103657 https://www.encodeproject.org/files/ENCFF151QKU/@@download/ENCFF151QKU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF120VZU bigWig fold change over control ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401KIO, ENCFF772PJM 204647979 ENCODE Processing Pipeline 93876a08841395e9a8f9a36aebf88284 https://www.encodeproject.org/files/ENCFF120VZU/@@download/ENCFF120VZU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF912HSU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF398SXO, ENCFF401KIO, ENCFF772PJM 5554652 ENCODE Processing Pipeline bb9b6f8752b916f9b14c57d4038020e5 https://www.encodeproject.org/files/ENCFF912HSU/@@download/ENCFF912HSU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF928OFV bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401KIO, ENCFF772PJM 4608923 ENCODE Processing Pipeline d7acca94b1164ef2ee6e3e4e901095fd https://www.encodeproject.org/files/ENCFF928OFV/@@download/ENCFF928OFV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF068VFA bigBed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF912HSU 12724921 ENCODE Processing Pipeline 5947e084e74c61dad3e47596855b8239 https://www.encodeproject.org/files/ENCFF068VFA/@@download/ENCFF068VFA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF825HSY bigWig fold change over control ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF398SXO, ENCFF772PJM 223077456 ENCODE Processing Pipeline 6d3c8a86624468371d60ef05dd10dbc1 https://www.encodeproject.org/files/ENCFF825HSY/@@download/ENCFF825HSY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF291YLM bigWig fold change over control ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF398SXO, ENCFF401KIO, ENCFF772PJM 378937514 ENCODE Processing Pipeline 8837ddc367fba206c67bd3fa785d3298 https://www.encodeproject.org/files/ENCFF291YLM/@@download/ENCFF291YLM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF501FIE bigBed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF928OFV 10304445 ENCODE Processing Pipeline 8fce11503d55339d6e1090852097a87c https://www.encodeproject.org/files/ENCFF501FIE/@@download/ENCFF501FIE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF840ZBH bigBed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF780KUW 4341364 ENCODE Processing Pipeline 86dd67c9a3f1a584df19eda9cd0e9b56 https://www.encodeproject.org/files/ENCFF840ZBH/@@download/ENCFF840ZBH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF461PRP bed narrowPeak optimal idr thresholded peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF780KUW, ENCFF912HSU, ENCFF928OFV 206712 ENCODE Processing Pipeline 709b8e71866304816aad277c92c8a529 https://www.encodeproject.org/files/ENCFF461PRP/@@download/ENCFF461PRP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF780KUW bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF398SXO, ENCFF772PJM 1813656 ENCODE Processing Pipeline 0a31bd7c7d097b456fbae9809f31c11b https://www.encodeproject.org/files/ENCFF780KUW/@@download/ENCFF780KUW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF711WZW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF461PRP 462954 ENCODE Processing Pipeline dc5d7bfb892bbc16f8b536fa313f85e1 https://www.encodeproject.org/files/ENCFF711WZW/@@download/ENCFF711WZW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF850ASP bigWig signal p-value ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF006UXO, ENCFF750MIM 214470706 ENCODE Processing Pipeline f549808fc83f25753a70d6851b2913a6 https://www.encodeproject.org/files/ENCFF850ASP/@@download/ENCFF850ASP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF448HHF bigWig signal p-value ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF006UXO, ENCFF468AKT, ENCFF750MIM 187301300 ENCODE Processing Pipeline c1f9696c666b03ee0f7b8d16cf76c4ce https://www.encodeproject.org/files/ENCFF448HHF/@@download/ENCFF448HHF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF847NAK bigWig fold change over control ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF006UXO, ENCFF750MIM 204881856 ENCODE Processing Pipeline 4bdfa0261a35ade57db3c6b7b963b828 https://www.encodeproject.org/files/ENCFF847NAK/@@download/ENCFF847NAK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF756IWD bigWig signal p-value ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF468AKT, ENCFF750MIM 207073158 ENCODE Processing Pipeline 4231731c9b543bdb7645d370cf87c306 https://www.encodeproject.org/files/ENCFF756IWD/@@download/ENCFF756IWD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF537WYY bigBed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF927YRG 10314990 ENCODE Processing Pipeline 886ee77c8fa66d75d4497b3dae160f2a https://www.encodeproject.org/files/ENCFF537WYY/@@download/ENCFF537WYY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF771GEW bigWig fold change over control ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF006UXO, ENCFF468AKT, ENCFF750MIM 378032467 ENCODE Processing Pipeline 8f74d42ee92f96969091024599fc7add https://www.encodeproject.org/files/ENCFF771GEW/@@download/ENCFF771GEW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF927YRG bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF006UXO, ENCFF750MIM 4623186 ENCODE Processing Pipeline da847f33f2805400c0bc537204cf5d79 https://www.encodeproject.org/files/ENCFF927YRG/@@download/ENCFF927YRG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF315GTG bigBed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122POU 4371385 ENCODE Processing Pipeline 1da351d3870c39189fdec0ab85f32a91 https://www.encodeproject.org/files/ENCFF315GTG/@@download/ENCFF315GTG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF580IGT bigBed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF128BVU 12736524 ENCODE Processing Pipeline 29e3588b6d5774c604c2522b7f8be654 https://www.encodeproject.org/files/ENCFF580IGT/@@download/ENCFF580IGT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF973NZX bigWig fold change over control ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF468AKT, ENCFF750MIM 221452352 ENCODE Processing Pipeline 6450f70df949c07d28bd23d29528d2b1 https://www.encodeproject.org/files/ENCFF973NZX/@@download/ENCFF973NZX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF656ADQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF076YZO 472829 ENCODE Processing Pipeline cf4d40a59499d99b539889376dffe21f https://www.encodeproject.org/files/ENCFF656ADQ/@@download/ENCFF656ADQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF122POU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF468AKT, ENCFF750MIM 1820030 ENCODE Processing Pipeline 3996b4cd7ed8486c8ccf3b1580007027 https://www.encodeproject.org/files/ENCFF122POU/@@download/ENCFF122POU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF128BVU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF006UXO, ENCFF468AKT, ENCFF750MIM 5584296 ENCODE Processing Pipeline 6a6ee7a237768d5ae8ce93c250880c3e https://www.encodeproject.org/files/ENCFF128BVU/@@download/ENCFF128BVU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF076YZO bed narrowPeak optimal idr thresholded peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF122POU, ENCFF128BVU, ENCFF927YRG 214196 ENCODE Processing Pipeline 124c1fdf52bdb35192e1849070affed9 https://www.encodeproject.org/files/ENCFF076YZO/@@download/ENCFF076YZO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QND bam alignments ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QNS 1528820695 Richard Myers, HAIB 0921c0d6ebd17b950d2d9810442fa464 https://www.encodeproject.org/files/ENCFF000QND/@@download/ENCFF000QND.bam hg19 released biological replicates with identical biosample ENCFF000QNE bam alignments ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QNP 797259328 Richard Myers, HAIB 2c89c1acede97c771b0dd7066082cdc0 https://www.encodeproject.org/files/ENCFF000QNE/@@download/ENCFF000QNE.bam hg19 released biological replicates with identical biosample ENCFF000QNF bigBed broadPeak peaks ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UMX 970073 Richard Myers, HAIB 2d36b0a4312c91373698cde57dd1d3b5 https://www.encodeproject.org/files/ENCFF000QNF/@@download/ENCFF000QNF.bigBed hg19 released biological replicates with identical biosample ENCFF000QNG bigBed broadPeak peaks ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UMZ 590722 Richard Myers, HAIB 3b1ba778e1f8bc218bce92bc13d51bbc https://www.encodeproject.org/files/ENCFF000QNG/@@download/ENCFF000QNG.bigBed hg19 released biological replicates with identical biosample ENCFF000QNH bigWig raw signal ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 210661698 Richard Myers, HAIB d3910c718c5342494158e279c1ff83fb https://www.encodeproject.org/files/ENCFF000QNH/@@download/ENCFF000QNH.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QNI bigWig raw signal ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 74030846 Richard Myers, HAIB 2fbeee9a85bb779131045f86fee4e8f4 https://www.encodeproject.org/files/ENCFF000QNI/@@download/ENCFF000QNI.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QNP fastq reads ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 870832661 Richard Myers, HAIB 07446cb863026c9cebcabb03365e0d83 https://www.encodeproject.org/files/ENCFF000QNP/@@download/ENCFF000QNP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF000QNS fastq reads ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1613443169 Richard Myers, HAIB baf95ad36e96e73d5163931dfb264310 https://www.encodeproject.org/files/ENCFF000QNS/@@download/ENCFF000QNS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000QQI/ released biological replicates with identical biosample ENCFF001UMX bed broadPeak peaks ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 688821 Richard Myers, HAIB 1958a753c4c9f6b744e8548017bb62a7 https://www.encodeproject.org/files/ENCFF001UMX/@@download/ENCFF001UMX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UMZ bed broadPeak peaks ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 386728 Richard Myers, HAIB aecc0cc74025927e59928171cf972e97 https://www.encodeproject.org/files/ENCFF001UMZ/@@download/ENCFF001UMZ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000ZBN bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZCA 359112759 Michael Snyder, Stanford 48036b7ac21c724fe662c38f7b86fdbc https://www.encodeproject.org/files/ENCFF000ZBN/@@download/ENCFF000ZBN.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBO bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VPC 1835746 Michael Snyder, Stanford 9031fdc73f949dc09833c6eed947c738 https://www.encodeproject.org/files/ENCFF000ZBO/@@download/ENCFF000ZBO.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBP bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZBZ 412562443 Michael Snyder, Stanford e241a7f077112488baac8ebc100b2c1f https://www.encodeproject.org/files/ENCFF000ZBP/@@download/ENCFF000ZBP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZBQ bigWig signal ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 272758144 Michael Snyder, Stanford df4594180382a8bdd6e02c35800a84bb https://www.encodeproject.org/files/ENCFF000ZBQ/@@download/ENCFF000ZBQ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZBZ fastq reads ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 889056155 Michael Snyder, Stanford 466f1fb1ab20276f22e7151f07f3617c https://www.encodeproject.org/files/ENCFF000ZBZ/@@download/ENCFF000ZBZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCA fastq reads ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 775864364 Michael Snyder, Stanford dd218ecba7e30f78438caa56cacf94b8 https://www.encodeproject.org/files/ENCFF000ZCA/@@download/ENCFF000ZCA.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VPC bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 733885 Michael Snyder, Stanford 5f961cf9a4a338ac77890f2cbbd41b1c https://www.encodeproject.org/files/ENCFF001VPC/@@download/ENCFF001VPC.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CYK bed narrowPeak optimal idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 452402 ENCODE Consortium Analysis Working Group 679423057e1c8b5be5b7229891b84cb2 https://www.encodeproject.org/files/ENCFF002CYK/@@download/ENCFF002CYK.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF728HXI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CYK 1206607 ENCODE Consortium 75f166026a31f5e209813185b7ae689f https://www.encodeproject.org/files/ENCFF728HXI/@@download/ENCFF728HXI.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF652UJM bam unfiltered alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBZ, ENCFF643CGH 924879127 ENCODE Processing Pipeline 199331ebf2a864277560ff136292a801 https://www.encodeproject.org/files/ENCFF652UJM/@@download/ENCFF652UJM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF572IXE bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBZ, ENCFF643CGH 518681417 ENCODE Processing Pipeline c7cd790a1525c6cc10a02d80040266c2 https://www.encodeproject.org/files/ENCFF572IXE/@@download/ENCFF572IXE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF835GHC bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZCA, ENCFF643CGH 434427599 ENCODE Processing Pipeline b7ad9c7e1d56011e159bbeac87966eaf https://www.encodeproject.org/files/ENCFF835GHC/@@download/ENCFF835GHC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF631NGI bam unfiltered alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZCA, ENCFF643CGH 803961715 ENCODE Processing Pipeline ddbf1cfb58addc5ad69216a87622ba70 https://www.encodeproject.org/files/ENCFF631NGI/@@download/ENCFF631NGI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF735DTE bam unfiltered alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBZ, ENCFF807MUK 921805597 ENCODE Processing Pipeline 71ed93a19cf784f07a99a3975eee0268 https://www.encodeproject.org/files/ENCFF735DTE/@@download/ENCFF735DTE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF621BLD bam unfiltered alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZCA, ENCFF807MUK 801037314 ENCODE Processing Pipeline 98ee6197fcf039c95ebef9d256f0164c https://www.encodeproject.org/files/ENCFF621BLD/@@download/ENCFF621BLD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF177SSB bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBZ, ENCFF807MUK 519348281 ENCODE Processing Pipeline 91d11798ecc89f58f33fd397755d0cba https://www.encodeproject.org/files/ENCFF177SSB/@@download/ENCFF177SSB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF495MQP bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZCA, ENCFF807MUK 434984367 ENCODE Processing Pipeline 414cfbb6291c2f84f68f24224a817baf https://www.encodeproject.org/files/ENCFF495MQP/@@download/ENCFF495MQP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF459AAR bigWig signal p-value ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 375714329 ENCODE Processing Pipeline b00fa33a3a7627cb5a4cc016f80f91b0 https://www.encodeproject.org/files/ENCFF459AAR/@@download/ENCFF459AAR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF173KQH bigWig signal p-value ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF156NSV, ENCFF715JBE, ENCFF835GHC 369571687 ENCODE Processing Pipeline 7a874f1b24776f644b6481e7f56eb7ee https://www.encodeproject.org/files/ENCFF173KQH/@@download/ENCFF173KQH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF519SCV bigWig fold change over control ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF156NSV, ENCFF715JBE, ENCFF835GHC 271712146 ENCODE Processing Pipeline fed0925afe0820ec1549195d7db863f5 https://www.encodeproject.org/files/ENCFF519SCV/@@download/ENCFF519SCV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF778YKO bigWig fold change over control ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 270739150 ENCODE Processing Pipeline 7de044e083ed57c5be1fd7dafe8a3002 https://www.encodeproject.org/files/ENCFF778YKO/@@download/ENCFF778YKO.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF836RGM bigWig signal p-value ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF177SSB, ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 550329224 ENCODE Processing Pipeline 222a344217a149f4bf7d3729cf0ebae4 https://www.encodeproject.org/files/ENCFF836RGM/@@download/ENCFF836RGM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF877AND bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF156NSV, ENCFF715JBE, ENCFF835GHC 5196204 ENCODE Processing Pipeline 793f6076c9fd160d59c2722bcdcd67f6 https://www.encodeproject.org/files/ENCFF877AND/@@download/ENCFF877AND.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF523ODF bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF177SSB, ENCFF498SAC 4519827 ENCODE Processing Pipeline 2e3e2f6ed744da703d91e8e1370c9b74 https://www.encodeproject.org/files/ENCFF523ODF/@@download/ENCFF523ODF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF984HBV bigWig signal p-value ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF177SSB, ENCFF498SAC 283560873 ENCODE Processing Pipeline c065c0e54161a305bb83f39f100a9b78 https://www.encodeproject.org/files/ENCFF984HBV/@@download/ENCFF984HBV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF535PDX bigWig signal p-value ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF572IXE 281856218 ENCODE Processing Pipeline 51183862bd44646402ddd3a74dbff92c https://www.encodeproject.org/files/ENCFF535PDX/@@download/ENCFF535PDX.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF088UNT bigWig fold change over control ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF177SSB, ENCFF498SAC 263738439 ENCODE Processing Pipeline bdc1798d4f2176d593e0c21d8c838eaa https://www.encodeproject.org/files/ENCFF088UNT/@@download/ENCFF088UNT.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF727KHF bigWig fold change over control ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156NSV, ENCFF572IXE, ENCFF715JBE, ENCFF835GHC 506902738 ENCODE Processing Pipeline a731b94f8b6f3976aa623e15aab78aa4 https://www.encodeproject.org/files/ENCFF727KHF/@@download/ENCFF727KHF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF545FAT bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 5201909 ENCODE Processing Pipeline f778df33398231bdd16946eadc00a734 https://www.encodeproject.org/files/ENCFF545FAT/@@download/ENCFF545FAT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279YVD bigWig fold change over control ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF572IXE 260363576 ENCODE Processing Pipeline ed855651d3a3b4d1d451fb23bc00e90d https://www.encodeproject.org/files/ENCFF279YVD/@@download/ENCFF279YVD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF752GLM bigWig fold change over control ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF177SSB, ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 529487133 ENCODE Processing Pipeline 6fa3124b34327c16af05c6d42b638e5a https://www.encodeproject.org/files/ENCFF752GLM/@@download/ENCFF752GLM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF098FKU bigWig signal p-value ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156NSV, ENCFF572IXE, ENCFF715JBE, ENCFF835GHC 514287983 ENCODE Processing Pipeline 119a69166ad6e5a9bfd6790572f8f071 https://www.encodeproject.org/files/ENCFF098FKU/@@download/ENCFF098FKU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF307DMW bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF156NSV, ENCFF572IXE 4515875 ENCODE Processing Pipeline 136a35353d2928ecf9c602794ede31c5 https://www.encodeproject.org/files/ENCFF307DMW/@@download/ENCFF307DMW.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF891AHH bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF177SSB, ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 5554902 ENCODE Processing Pipeline e995fb323a6b9e2470b30af5fb926b01 https://www.encodeproject.org/files/ENCFF891AHH/@@download/ENCFF891AHH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF234DFK bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF156NSV, ENCFF572IXE, ENCFF715JBE, ENCFF835GHC 5549806 ENCODE Processing Pipeline 2341371e3719ed8f646fc51538f5f404 https://www.encodeproject.org/files/ENCFF234DFK/@@download/ENCFF234DFK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF159SBO bed narrowPeak conservative idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF523ODF, ENCFF545FAT, ENCFF891AHH 366307 ENCODE Processing Pipeline 9a173a049cd6d2dfd2e3bf96f94a5c19 https://www.encodeproject.org/files/ENCFF159SBO/@@download/ENCFF159SBO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182IDO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF609UTS 796692 ENCODE Processing Pipeline 67428b4226745845441b3f04eb68ac71 https://www.encodeproject.org/files/ENCFF182IDO/@@download/ENCFF182IDO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF022TYK bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF523ODF 10467313 ENCODE Processing Pipeline 3de3a89e4f761b21e69f016dfd8dfd2b https://www.encodeproject.org/files/ENCFF022TYK/@@download/ENCFF022TYK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF942JYP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159SBO 795465 ENCODE Processing Pipeline 7d951770d69fdcf2fdd7b8fa6362c15f https://www.encodeproject.org/files/ENCFF942JYP/@@download/ENCFF942JYP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF173KLF bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF380FJL 841616 ENCODE Processing Pipeline 4bc8f34aff6aa7349eb8d1770c5befc7 https://www.encodeproject.org/files/ENCFF173KLF/@@download/ENCFF173KLF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF246WEV bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF234DFK 13309344 ENCODE Processing Pipeline 24c61161b5e94cd84ae100da5b9eeadf https://www.encodeproject.org/files/ENCFF246WEV/@@download/ENCFF246WEV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF380FJL bed narrowPeak optimal idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF523ODF, ENCFF545FAT, ENCFF891AHH 395661 ENCODE Processing Pipeline 119c19af83bd82e64f13fb0805f4b209 https://www.encodeproject.org/files/ENCFF380FJL/@@download/ENCFF380FJL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF370YGS bed narrowPeak optimal idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF234DFK, ENCFF307DMW, ENCFF419RSJ, ENCFF877AND 404676 ENCODE Processing Pipeline b1e02cad87c932f2787e21483038a402 https://www.encodeproject.org/files/ENCFF370YGS/@@download/ENCFF370YGS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF228WNY bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF877AND 13027569 ENCODE Processing Pipeline a6f0d113f3b53476937a90ded24dc2a8 https://www.encodeproject.org/files/ENCFF228WNY/@@download/ENCFF228WNY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF901UYM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF370YGS 854371 ENCODE Processing Pipeline be60c35b1826c62e18a64727d84b05b0 https://www.encodeproject.org/files/ENCFF901UYM/@@download/ENCFF901UYM.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF021WSF bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF545FAT 13026694 ENCODE Processing Pipeline 692f7c8fe6fe4efef0695fb419e0f97e https://www.encodeproject.org/files/ENCFF021WSF/@@download/ENCFF021WSF.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952CIN bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF307DMW 10471643 ENCODE Processing Pipeline dc94d17af6a9457533a0ed9334a01e60 https://www.encodeproject.org/files/ENCFF952CIN/@@download/ENCFF952CIN.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF400WZT bigBed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF891AHH 13305552 ENCODE Processing Pipeline 091828b9bc6f28fa710e05e441b4e814 https://www.encodeproject.org/files/ENCFF400WZT/@@download/ENCFF400WZT.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF609UTS bed narrowPeak conservative idr thresholded peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF234DFK, ENCFF307DMW, ENCFF419RSJ, ENCFF877AND 367133 ENCODE Processing Pipeline 230af57a401ebf7ac39e4045e6005dd2 https://www.encodeproject.org/files/ENCFF609UTS/@@download/ENCFF609UTS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PCH bam alignments ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PCS 1234671592 Richard Myers, HAIB d883c6637494ec712ae766bb1a077c09 https://www.encodeproject.org/files/ENCFF000PCH/@@download/ENCFF000PCH.bam hg19 released biological replicates with identical biosample ENCFF000PCI bigBed broadPeak peaks ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UEM 117411 Richard Myers, HAIB f1ec8601f122ab9914f52d871d4410a6 https://www.encodeproject.org/files/ENCFF000PCI/@@download/ENCFF000PCI.bigBed hg19 released biological replicates with identical biosample ENCFF000PCJ bigBed broadPeak peaks ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UEN 120895 Richard Myers, HAIB 3865e2ae3ddb4d768cb6cf683f936792 https://www.encodeproject.org/files/ENCFF000PCJ/@@download/ENCFF000PCJ.bigBed hg19 released biological replicates with identical biosample ENCFF000PCK bam alignments ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PCV 1495916403 Richard Myers, HAIB c580f94f124fcfb0eb72b9b1d9a33511 https://www.encodeproject.org/files/ENCFF000PCK/@@download/ENCFF000PCK.bam hg19 released biological replicates with identical biosample ENCFF000PCL bigWig raw signal ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 152025497 Richard Myers, HAIB df8594d22cce284a925a1159f8861b96 https://www.encodeproject.org/files/ENCFF000PCL/@@download/ENCFF000PCL.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000PCN bigWig raw signal ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 242688905 Richard Myers, HAIB 67ee0b4f89ccfb26f17ead66fa0e37a0 https://www.encodeproject.org/files/ENCFF000PCN/@@download/ENCFF000PCN.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000PCS fastq reads ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1262054129 Richard Myers, HAIB 9453548ef7135caed4667843b1deedc5 https://www.encodeproject.org/files/ENCFF000PCS/@@download/ENCFF000PCS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released biological replicates with identical biosample ENCFF000PCV fastq reads ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1527151906 Richard Myers, HAIB 4440d178519a64639ddfafad30f61bc1 https://www.encodeproject.org/files/ENCFF000PCV/@@download/ENCFF000PCV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released biological replicates with identical biosample ENCFF001UEM bed broadPeak peaks ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 38682 Richard Myers, HAIB c0ee5da37aa653536927f10cf36c681b https://www.encodeproject.org/files/ENCFF001UEM/@@download/ENCFF001UEM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UEN bed broadPeak peaks ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 40501 Richard Myers, HAIB a4dca44daf7e46dd46b49f67803b970c https://www.encodeproject.org/files/ENCFF001UEN/@@download/ENCFF001UEN.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QYC bam alignments ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYP 1100662972 Richard Myers, HAIB 82f72a5f130a5307313e25f3da873f57 https://www.encodeproject.org/files/ENCFF000QYC/@@download/ENCFF000QYC.bam hg19 released biological replicates with identical biosample ENCFF000QYE bigBed broadPeak peaks ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPF 195553 Richard Myers, HAIB cd07a9b6f74d5b1b5012dddee567d062 https://www.encodeproject.org/files/ENCFF000QYE/@@download/ENCFF000QYE.bigBed hg19 released biological replicates with identical biosample ENCFF000QYF bigBed broadPeak peaks ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPG 266415 Richard Myers, HAIB 6b32914aead1bed10cb09c21388766db https://www.encodeproject.org/files/ENCFF000QYF/@@download/ENCFF000QYF.bigBed hg19 released biological replicates with identical biosample ENCFF000QYG bam alignments ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QYW 2211026910 Richard Myers, HAIB 094edd6b07ea829cc973ad9b4aabc9aa https://www.encodeproject.org/files/ENCFF000QYG/@@download/ENCFF000QYG.bam hg19 released biological replicates with identical biosample ENCFF000QYI bigWig raw signal ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 150462352 Richard Myers, HAIB 84ce5e79703b1de4a83278788cedd174 https://www.encodeproject.org/files/ENCFF000QYI/@@download/ENCFF000QYI.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QYK bigWig raw signal ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 236423065 Richard Myers, HAIB fd533ee17bc89ded0946233b53fdc07a https://www.encodeproject.org/files/ENCFF000QYK/@@download/ENCFF000QYK.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QYP fastq reads ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1134049046 Richard Myers, HAIB f4f28d9e54743795aaeb2aebfb92df10 https://www.encodeproject.org/files/ENCFF000QYP/@@download/ENCFF000QYP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF000QYW fastq reads ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2341763398 Richard Myers, HAIB 27f8fbe4b0ff2e8be0a5bec09ff4daaa https://www.encodeproject.org/files/ENCFF000QYW/@@download/ENCFF000QYW.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPF bed broadPeak peaks ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 1 75612 Richard Myers, HAIB c32787c21dd66c5cced31ea8b7b1236e https://www.encodeproject.org/files/ENCFF001UPF/@@download/ENCFF001UPF.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPG bed broadPeak peaks ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 1 113644 Richard Myers, HAIB c071581c7fd229e907d5b008c5809e51 https://www.encodeproject.org/files/ENCFF001UPG/@@download/ENCFF001UPG.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000REB bam alignments ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RER 1418668884 Richard Myers, HAIB e9cc37f8a076df0b2e2ef50fb5e0464a https://www.encodeproject.org/files/ENCFF000REB/@@download/ENCFF000REB.bam hg19 released biological replicates with identical biosample ENCFF000RED bigBed broadPeak peaks ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UQL 119697 Richard Myers, HAIB c0f3a329b3a8030c1cc20fe3cb6edd30 https://www.encodeproject.org/files/ENCFF000RED/@@download/ENCFF000RED.bigBed hg19 released biological replicates with identical biosample ENCFF000REE bigBed broadPeak peaks ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UQM 313759 Richard Myers, HAIB 664d36ff7f6b26458beb67b56b70fc69 https://www.encodeproject.org/files/ENCFF000REE/@@download/ENCFF000REE.bigBed hg19 released biological replicates with identical biosample ENCFF000REG bam alignments ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REP 1256032224 Richard Myers, HAIB 41ff1d8936e4201eca202f2c6330a811 https://www.encodeproject.org/files/ENCFF000REG/@@download/ENCFF000REG.bam hg19 released biological replicates with identical biosample ENCFF000REH bigWig raw signal ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 130292794 Richard Myers, HAIB d91f37081818f0986e0ec5198d88139d https://www.encodeproject.org/files/ENCFF000REH/@@download/ENCFF000REH.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000REJ bigWig raw signal ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 131786639 Richard Myers, HAIB 5958ecad907d9d5abff4cd671578bbda https://www.encodeproject.org/files/ENCFF000REJ/@@download/ENCFF000REJ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000REP fastq reads ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1280390029 Richard Myers, HAIB 8341aa56c1f72bbe031385e51a2ed3ca https://www.encodeproject.org/files/ENCFF000REP/@@download/ENCFF000REP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCP/ released biological replicates with identical biosample ENCFF000RER fastq reads ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1457554570 Richard Myers, HAIB ee437b288dea1efd7fd22a8c5b61af9d https://www.encodeproject.org/files/ENCFF000RER/@@download/ENCFF000RER.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UQL bed broadPeak peaks ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 1 39750 Richard Myers, HAIB 49e5584ed44033197f2063ca5b84b04f https://www.encodeproject.org/files/ENCFF001UQL/@@download/ENCFF001UQL.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001UQM bed broadPeak peaks ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 1 191732 Richard Myers, HAIB 1fe26e44ea5ee4b8db8bb1c5f0135952 https://www.encodeproject.org/files/ENCFF001UQM/@@download/ENCFF001UQM.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000YNB bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 1 466807479 Michael Snyder, Stanford b4a8dca83b1b79f679ff310bc5758d18 https://www.encodeproject.org/files/ENCFF000YNB/@@download/ENCFF000YNB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YNC bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VND 412931 Michael Snyder, Stanford 58500fbfd7c69dc68b5ccc911eaf3679 https://www.encodeproject.org/files/ENCFF000YNC/@@download/ENCFF000YNC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YND fastq reads ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 941263232 Michael Snyder, Stanford c0d7e3db1588727380de1beded581450 https://www.encodeproject.org/files/ENCFF000YND/@@download/ENCFF000YND.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released borderline replicate concordance, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000YNF fastq reads ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 914720436 Michael Snyder, Stanford d9d9e1662931f1637328138f71b6095d https://www.encodeproject.org/files/ENCFF000YNF/@@download/ENCFF000YNF.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released borderline replicate concordance, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth, inconsistent control read length biological replicates with identical biosample ENCFF000YNG bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 1 495204944 Michael Snyder, Stanford d045385516dc62e977d9e13bd2225d5c https://www.encodeproject.org/files/ENCFF000YNG/@@download/ENCFF000YNG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000YNI bigWig signal ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 474078986 Michael Snyder, Stanford cf5fc0e6f09e28e3be9ee130522d7d04 https://www.encodeproject.org/files/ENCFF000YNI/@@download/ENCFF000YNI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VND bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 173891 Michael Snyder, Stanford 6a07da1b0c8bc539abe32ca5078768e6 https://www.encodeproject.org/files/ENCFF001VND/@@download/ENCFF001VND.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF392GZX bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000YND, ENCFF643CGH 503955067 ENCODE Processing Pipeline 6175db3d2b797f9613fe5d7d997013fb https://www.encodeproject.org/files/ENCFF392GZX/@@download/ENCFF392GZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF355PTV bam unfiltered alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000YND, ENCFF643CGH 916897813 ENCODE Processing Pipeline 7a10d5b15008a7e752890c3eb529f9b7 https://www.encodeproject.org/files/ENCFF355PTV/@@download/ENCFF355PTV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF485XKZ bam unfiltered alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000YNF, ENCFF643CGH 908729308 ENCODE Processing Pipeline deedbc23b9fd82169d615d17b8029719 https://www.encodeproject.org/files/ENCFF485XKZ/@@download/ENCFF485XKZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF431ZVW bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000YNF, ENCFF643CGH 520200983 ENCODE Processing Pipeline d6af1c4f47c11d7d3315049e9cc33cd9 https://www.encodeproject.org/files/ENCFF431ZVW/@@download/ENCFF431ZVW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF888FKV bam unfiltered alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000YNF, ENCFF807MUK 905444449 ENCODE Processing Pipeline e935c7fe72ba22dd5d62ca9f4d2a516b https://www.encodeproject.org/files/ENCFF888FKV/@@download/ENCFF888FKV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF564QLO bam unfiltered alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000YND, ENCFF807MUK 913767163 ENCODE Processing Pipeline acd3e03814f8c2c9e526323651444411 https://www.encodeproject.org/files/ENCFF564QLO/@@download/ENCFF564QLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF573VVJ bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000YNF, ENCFF807MUK 520882474 ENCODE Processing Pipeline 6a2e4da0cda14b18462a78f06e1c55fc https://www.encodeproject.org/files/ENCFF573VVJ/@@download/ENCFF573VVJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF942NUX bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000YND, ENCFF807MUK 504562752 ENCODE Processing Pipeline 9473f4a949dcea619d705b5c587fc993 https://www.encodeproject.org/files/ENCFF942NUX/@@download/ENCFF942NUX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF568NXU bigWig signal p-value ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF942NUX 411641296 ENCODE Processing Pipeline f55904d83388f43705feb7f27d92fefc https://www.encodeproject.org/files/ENCFF568NXU/@@download/ENCFF568NXU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF573YKX bigWig signal p-value ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF498SAC, ENCFF573VVJ 284717524 ENCODE Processing Pipeline a148348581e97612005c5ccb075495a5 https://www.encodeproject.org/files/ENCFF573YKX/@@download/ENCFF573YKX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF869KHC bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF253DCO 10675128 ENCODE Processing Pipeline fb2fa49fc56081444ca8e6ee77e0ab07 https://www.encodeproject.org/files/ENCFF869KHC/@@download/ENCFF869KHC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF178NBS bed narrowPeak conservative idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF234GQW, ENCFF253DCO, ENCFF916MQB 197081 ENCODE Processing Pipeline 1f762100579857098da1809bf575b8c2 https://www.encodeproject.org/files/ENCFF178NBS/@@download/ENCFF178NBS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF253DCO bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF942NUX 4597558 ENCODE Processing Pipeline 83ffe6ced3b82d7ee59333110e1fea74 https://www.encodeproject.org/files/ENCFF253DCO/@@download/ENCFF253DCO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF870VVO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF632NQI 520532 ENCODE Processing Pipeline 3b7082e2965703f137ffd4ad8e707582 https://www.encodeproject.org/files/ENCFF870VVO/@@download/ENCFF870VVO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF724KSO bigWig signal p-value ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF498SAC, ENCFF573VVJ, ENCFF732TLR, ENCFF942NUX 527016046 ENCODE Processing Pipeline deb12691681657f63627a2c2b0998a6a https://www.encodeproject.org/files/ENCFF724KSO/@@download/ENCFF724KSO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF234GQW bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF498SAC, ENCFF573VVJ, ENCFF732TLR, ENCFF942NUX 5191930 ENCODE Processing Pipeline 749e2381ff9f6dd286141019b1b16ebb https://www.encodeproject.org/files/ENCFF234GQW/@@download/ENCFF234GQW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF097EXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF178NBS 425959 ENCODE Processing Pipeline 3497bb786d61d0c6bdcb0ca866c9eff7 https://www.encodeproject.org/files/ENCFF097EXZ/@@download/ENCFF097EXZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF665QNP bigWig fold change over control ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF942NUX 330147149 ENCODE Processing Pipeline fce56e51d1a3b7ce62717fd89d8dc88a https://www.encodeproject.org/files/ENCFF665QNP/@@download/ENCFF665QNP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF352AUQ bigWig fold change over control ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF498SAC, ENCFF573VVJ 260484047 ENCODE Processing Pipeline 94f98de889fc3ac40bbe0d37e1e8ca45 https://www.encodeproject.org/files/ENCFF352AUQ/@@download/ENCFF352AUQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF833CBY bigWig fold change over control ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF498SAC, ENCFF573VVJ, ENCFF732TLR, ENCFF942NUX 544988785 ENCODE Processing Pipeline 1eb2e73f2ac1dfc43c8debd4b264823a https://www.encodeproject.org/files/ENCFF833CBY/@@download/ENCFF833CBY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF916MQB bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF498SAC, ENCFF573VVJ 4069521 ENCODE Processing Pipeline 8b4ab6409aa75db4f808f00cfeb1980f https://www.encodeproject.org/files/ENCFF916MQB/@@download/ENCFF916MQB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF311YRS bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF916MQB 10183322 ENCODE Processing Pipeline 9ead2f203f8fba3a5934a48ca43b6456 https://www.encodeproject.org/files/ENCFF311YRS/@@download/ENCFF311YRS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF308SHR bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF234GQW 11176063 ENCODE Processing Pipeline bdf67ab20803445a46d2750a4b0c0abd https://www.encodeproject.org/files/ENCFF308SHR/@@download/ENCFF308SHR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF632NQI bed narrowPeak optimal idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF234GQW, ENCFF253DCO, ENCFF916MQB 261856 ENCODE Processing Pipeline e0454bcca2f35d6ec9a1ad5aca4d6ebc https://www.encodeproject.org/files/ENCFF632NQI/@@download/ENCFF632NQI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF833DKE bigWig fold change over control ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF156NSV, ENCFF431ZVW 265347665 ENCODE Processing Pipeline 8320b57a9905d7b3cdd1e59e8ddffeec https://www.encodeproject.org/files/ENCFF833DKE/@@download/ENCFF833DKE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF962ECN bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF224MWN 10647904 ENCODE Processing Pipeline aaf41963fdc2b57270e97292406d9684 https://www.encodeproject.org/files/ENCFF962ECN/@@download/ENCFF962ECN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF411DBA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF875JHB 435293 ENCODE Processing Pipeline 4fd1ccd71e82c70cd86036f179736b97 https://www.encodeproject.org/files/ENCFF411DBA/@@download/ENCFF411DBA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF932GTA bigWig fold change over control ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF156NSV, ENCFF392GZX, ENCFF431ZVW, ENCFF715JBE 559800856 ENCODE Processing Pipeline 9d6b84ac0e1bc15d593555e44a6aa7e0 https://www.encodeproject.org/files/ENCFF932GTA/@@download/ENCFF932GTA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF224MWN bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF156NSV, ENCFF392GZX, ENCFF715JBE 4573406 ENCODE Processing Pipeline 37ac862124138efa0ae4cdca773c331c https://www.encodeproject.org/files/ENCFF224MWN/@@download/ENCFF224MWN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF939ODZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF148JKK 524186 ENCODE Processing Pipeline 738f24c527dc10d9f8dc2a1b2b666b57 https://www.encodeproject.org/files/ENCFF939ODZ/@@download/ENCFF939ODZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF611TNZ bigWig signal p-value ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF156NSV, ENCFF392GZX, ENCFF715JBE 447826183 ENCODE Processing Pipeline 2553002480e69d527e706861dab6f18b https://www.encodeproject.org/files/ENCFF611TNZ/@@download/ENCFF611TNZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF735YRM bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF156NSV, ENCFF431ZVW 4041075 ENCODE Processing Pipeline b3a7db6e52d108d876514950a5263549 https://www.encodeproject.org/files/ENCFF735YRM/@@download/ENCFF735YRM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF045KYK bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF156NSV, ENCFF392GZX, ENCFF431ZVW, ENCFF715JBE 5196828 ENCODE Processing Pipeline be6bb7ddf8a0b80d0dfe7940076b259f https://www.encodeproject.org/files/ENCFF045KYK/@@download/ENCFF045KYK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF375QMM bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF735YRM 10127797 ENCODE Processing Pipeline 7cca08970d3de979061d6f614e499118 https://www.encodeproject.org/files/ENCFF375QMM/@@download/ENCFF375QMM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF148JKK bed narrowPeak optimal idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF045KYK, ENCFF224MWN, ENCFF419RSJ, ENCFF735YRM 262784 ENCODE Processing Pipeline d5183b4c65853c9dea2b299fd17f2562 https://www.encodeproject.org/files/ENCFF148JKK/@@download/ENCFF148JKK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF394LAC bigWig signal p-value ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF156NSV, ENCFF431ZVW 285459957 ENCODE Processing Pipeline 78a81f1dd8ac70389a227a1d92936fe7 https://www.encodeproject.org/files/ENCFF394LAC/@@download/ENCFF394LAC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF826QID bigWig signal p-value ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF156NSV, ENCFF392GZX, ENCFF431ZVW, ENCFF715JBE 557094998 ENCODE Processing Pipeline a291366073938b9b8d5779988ed05ce3 https://www.encodeproject.org/files/ENCFF826QID/@@download/ENCFF826QID.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF875JHB bed narrowPeak conservative idr thresholded peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF045KYK, ENCFF224MWN, ENCFF419RSJ, ENCFF735YRM 197526 ENCODE Processing Pipeline 8e03c2d46eded620a080b6b726df9c6e https://www.encodeproject.org/files/ENCFF875JHB/@@download/ENCFF875JHB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF974BQE bigWig fold change over control ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF156NSV, ENCFF392GZX, ENCFF715JBE 329466668 ENCODE Processing Pipeline fb3e0364b9722781bf351a145cda8e1f https://www.encodeproject.org/files/ENCFF974BQE/@@download/ENCFF974BQE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF780NTF bigBed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF045KYK 11225485 ENCODE Processing Pipeline 3a987356259ec481e2e4ac83e4c5b956 https://www.encodeproject.org/files/ENCFF780NTF/@@download/ENCFF780NTF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XJW bam alignments ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKG 392016955 Michael Snyder, Stanford 4fc9f095875f6cc7077e65d80034c9f1 https://www.encodeproject.org/files/ENCFF000XJW/@@download/ENCFF000XJW.bam hg19 released low read length biological replicates with identical biosample ENCFF000XJX bigBed narrowPeak peaks ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJB 3160882 Michael Snyder, Stanford 12d0571c86d99273e9658294199f9951 https://www.encodeproject.org/files/ENCFF000XJX/@@download/ENCFF000XJX.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XJY bam alignments ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKF 368942515 Michael Snyder, Stanford 66b15c65faae91cff5e4369ac5b4c68f https://www.encodeproject.org/files/ENCFF000XJY/@@download/ENCFF000XJY.bam hg19 released low read length biological replicates with identical biosample ENCFF000XJZ bigWig signal ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 309817724 Michael Snyder, Stanford 873b722535ba325a92d0f675a8ede8cc https://www.encodeproject.org/files/ENCFF000XJZ/@@download/ENCFF000XJZ.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XKF fastq reads ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 723232679 Michael Snyder, Stanford 278877e78e1e8acf8a24c8ee4b18bced https://www.encodeproject.org/files/ENCFF000XKF/@@download/ENCFF000XKF.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XKG fastq reads ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 707554860 Michael Snyder, Stanford 14804fbc83ae8312ec427ef74c121e62 https://www.encodeproject.org/files/ENCFF000XKG/@@download/ENCFF000XKG.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJB bed narrowPeak peaks ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1305601 Michael Snyder, Stanford 0e5d4563bfcfc63e4aadcd091ae6e1f9 https://www.encodeproject.org/files/ENCFF001VJB/@@download/ENCFF001VJB.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CSZ bed narrowPeak optimal idr thresholded peaks ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 328935 ENCODE Consortium Analysis Working Group 302bdb27fefe454afd34b62886abf170 https://www.encodeproject.org/files/ENCFF002CSZ/@@download/ENCFF002CSZ.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF364DFT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSZ 916999 ENCODE Consortium e5378fe34dd9318f47b065869b000dd6 https://www.encodeproject.org/files/ENCFF364DFT/@@download/ENCFF364DFT.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000QAH bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QAQ 466328611 Richard Myers, HAIB 020e910936b56863f515acbda2f87fda https://www.encodeproject.org/files/ENCFF000QAH/@@download/ENCFF000QAH.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAI bigBed broadPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJZ 423722 Richard Myers, HAIB bf49644be3d57182dd1ae7661925829b https://www.encodeproject.org/files/ENCFF000QAI/@@download/ENCFF000QAI.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAJ bigBed broadPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKA 434312 Richard Myers, HAIB 68278717a52e845e0dc221166d569d5b https://www.encodeproject.org/files/ENCFF000QAJ/@@download/ENCFF000QAJ.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAK bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QAV 717277101 Richard Myers, HAIB ed059f9d80a3e2b893bfd5bcddde74f5 https://www.encodeproject.org/files/ENCFF000QAK/@@download/ENCFF000QAK.bam hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAM bigWig raw signal ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 13046844 Richard Myers, HAIB d2aa330a4f0d2601c8ca4004fe88fb1b https://www.encodeproject.org/files/ENCFF000QAM/@@download/ENCFF000QAM.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAO bigWig raw signal ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 28268488 Richard Myers, HAIB d6e4a38d48b13f2e91d8dd0ce0723000 https://www.encodeproject.org/files/ENCFF000QAO/@@download/ENCFF000QAO.bigWig hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAQ fastq reads ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 467330636 Richard Myers, HAIB 5ae5c846ee52c3cc15fbab7444ebe6ff https://www.encodeproject.org/files/ENCFF000QAQ/@@download/ENCFF000QAQ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QAV fastq reads ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 786381143 Richard Myers, HAIB 46ab0ad46878a180cfd0c571e4afd7a0 https://www.encodeproject.org/files/ENCFF000QAV/@@download/ENCFF000QAV.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UJZ bed broadPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 1 204699 Richard Myers, HAIB 0cb8237b6fb91cc17841d9c5bedd989f https://www.encodeproject.org/files/ENCFF001UJZ/@@download/ENCFF001UJZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001UKA bed broadPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 1 245856 Richard Myers, HAIB afa750ef05c8e8ec1aa7e1a43c5af754 https://www.encodeproject.org/files/ENCFF001UKA/@@download/ENCFF001UKA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CLZ bed narrowPeak optimal idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 290707 ENCODE Consortium Analysis Working Group e81f2714fb61f80af419bc5e45682868 https://www.encodeproject.org/files/ENCFF002CLZ/@@download/ENCFF002CLZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF612ERP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLZ 582996 ENCODE Consortium 5afaa5b21f1a9a388198443399f9f1ed https://www.encodeproject.org/files/ENCFF612ERP/@@download/ENCFF612ERP.bigBed hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF351CRO bam unfiltered alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAQ, ENCFF643CGH 597085098 ENCODE Processing Pipeline c1122d659fcf4f013a953b93a8348c17 https://www.encodeproject.org/files/ENCFF351CRO/@@download/ENCFF351CRO.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF902IUF bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAQ, ENCFF643CGH 303854787 ENCODE Processing Pipeline 0b7d97e48aed00e6f4753a3cfdf40906 https://www.encodeproject.org/files/ENCFF902IUF/@@download/ENCFF902IUF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF603XOJ bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAV, ENCFF643CGH 233791591 ENCODE Processing Pipeline c2640c58a8cf7ace101536ea8da8f1c7 https://www.encodeproject.org/files/ENCFF603XOJ/@@download/ENCFF603XOJ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF073NRB bam unfiltered alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAV, ENCFF643CGH 882019825 ENCODE Processing Pipeline 8abf72005e30dd3c67bcfe55984b76c9 https://www.encodeproject.org/files/ENCFF073NRB/@@download/ENCFF073NRB.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF100PUI bam unfiltered alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAQ, ENCFF807MUK 596186911 ENCODE Processing Pipeline 118e048f9405cd4e076c2ce30bd6f254 https://www.encodeproject.org/files/ENCFF100PUI/@@download/ENCFF100PUI.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF538JCZ bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAQ, ENCFF807MUK 304054813 ENCODE Processing Pipeline 7525eba97ed590f1de5640cb687d7a12 https://www.encodeproject.org/files/ENCFF538JCZ/@@download/ENCFF538JCZ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF633ZKV bam unfiltered alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAV, ENCFF807MUK 881245326 ENCODE Processing Pipeline cb44604dd05588cf62993d837c1bf08e https://www.encodeproject.org/files/ENCFF633ZKV/@@download/ENCFF633ZKV.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF175EOK bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAV, ENCFF807MUK 233968251 ENCODE Processing Pipeline aeb8475817d5c22fd20e0b14e59a6cdd https://www.encodeproject.org/files/ENCFF175EOK/@@download/ENCFF175EOK.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF174ZDJ bigWig signal p-value ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF772PJM, ENCFF902IUF 171945906 ENCODE Processing Pipeline c753d22f627449f8e5228333c5cda158 https://www.encodeproject.org/files/ENCFF174ZDJ/@@download/ENCFF174ZDJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF999FGE bigWig fold change over control ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF772PJM, ENCFF902IUF 130670411 ENCODE Processing Pipeline 119e7d0c95d88f999500b1975e5c192e https://www.encodeproject.org/files/ENCFF999FGE/@@download/ENCFF999FGE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF908PGZ bigWig fold change over control ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF603XOJ, ENCFF772PJM, ENCFF902IUF 213398081 ENCODE Processing Pipeline 1a0aa0d36d7dd0fd3ed4572e8c604505 https://www.encodeproject.org/files/ENCFF908PGZ/@@download/ENCFF908PGZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF455RYT bigWig signal p-value ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF603XOJ, ENCFF772PJM 180241985 ENCODE Processing Pipeline 5e86af15e17c2639736ee4a99362adf7 https://www.encodeproject.org/files/ENCFF455RYT/@@download/ENCFF455RYT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF883TBT bigWig fold change over control ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF603XOJ, ENCFF772PJM 99777156 ENCODE Processing Pipeline 55c657562805a2fd5d72267a86331c4a https://www.encodeproject.org/files/ENCFF883TBT/@@download/ENCFF883TBT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF781AWX bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF603XOJ, ENCFF772PJM, ENCFF902IUF 4583450 ENCODE Processing Pipeline 2b4e0cbe56a01e79132a5d60ffa468fd https://www.encodeproject.org/files/ENCFF781AWX/@@download/ENCFF781AWX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF940QSW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF554UPA 426468 ENCODE Processing Pipeline 2f7cee61c36c0bb0492e94c1f13c6c4b https://www.encodeproject.org/files/ENCFF940QSW/@@download/ENCFF940QSW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF124HAC bed narrowPeak optimal idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF210BNW, ENCFF419RSJ, ENCFF507LZF, ENCFF781AWX 261370 ENCODE Processing Pipeline 02eada5e9e0de75b0ff67b7d443fead1 https://www.encodeproject.org/files/ENCFF124HAC/@@download/ENCFF124HAC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF025QZU bigWig signal p-value ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF603XOJ, ENCFF772PJM, ENCFF902IUF 209106168 ENCODE Processing Pipeline 091d27dfc4e0aa87fce4eef627553317 https://www.encodeproject.org/files/ENCFF025QZU/@@download/ENCFF025QZU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF507LZF bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF772PJM, ENCFF902IUF 2539837 ENCODE Processing Pipeline 6321a82df6d44d9c955c6489ac010538 https://www.encodeproject.org/files/ENCFF507LZF/@@download/ENCFF507LZF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF210BNW bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF603XOJ, ENCFF772PJM 3427898 ENCODE Processing Pipeline e6208db8813379fbb61864602f00cb73 https://www.encodeproject.org/files/ENCFF210BNW/@@download/ENCFF210BNW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF087NMZ bigBed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF507LZF 5130893 ENCODE Processing Pipeline 2b921bb91e37001557340ca1140d7049 https://www.encodeproject.org/files/ENCFF087NMZ/@@download/ENCFF087NMZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF634BLI bigBed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210BNW 7655795 ENCODE Processing Pipeline 517652c08a2ec060475fefe3b088d3fc https://www.encodeproject.org/files/ENCFF634BLI/@@download/ENCFF634BLI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF611XXI bigBed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF781AWX 10170809 ENCODE Processing Pipeline bce7f00f9ce0622dab35ff5e5935af47 https://www.encodeproject.org/files/ENCFF611XXI/@@download/ENCFF611XXI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF554UPA bed narrowPeak conservative idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF210BNW, ENCFF419RSJ, ENCFF507LZF, ENCFF781AWX 192917 ENCODE Processing Pipeline 7680f41509e7f77365503fb5992ddfc0 https://www.encodeproject.org/files/ENCFF554UPA/@@download/ENCFF554UPA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF155CBK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF124HAC 527540 ENCODE Processing Pipeline d5ff1e57829ea1e5da07e258c1b3f56f https://www.encodeproject.org/files/ENCFF155CBK/@@download/ENCFF155CBK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF261RIX bigWig signal p-value ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175EOK, ENCFF750MIM 207196241 ENCODE Processing Pipeline 19978d2f9f8272a79b0a5b4336c977b9 https://www.encodeproject.org/files/ENCFF261RIX/@@download/ENCFF261RIX.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF913NUW bigWig signal p-value ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF538JCZ, ENCFF750MIM 235156079 ENCODE Processing Pipeline c34b605752312ee2aedb82fb332f7a3f https://www.encodeproject.org/files/ENCFF913NUW/@@download/ENCFF913NUW.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF649CUE bigWig signal p-value ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175EOK, ENCFF538JCZ, ENCFF750MIM 209162414 ENCODE Processing Pipeline b620bfe94044dd21d009ab8a71f08027 https://www.encodeproject.org/files/ENCFF649CUE/@@download/ENCFF649CUE.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF704RCT bigWig fold change over control ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175EOK, ENCFF750MIM 99384579 ENCODE Processing Pipeline c6002edea29377ba78294be0a9a03c7f https://www.encodeproject.org/files/ENCFF704RCT/@@download/ENCFF704RCT.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF204SDM bigWig fold change over control ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF538JCZ, ENCFF750MIM 129696440 ENCODE Processing Pipeline 4d28f52bc249e8704355cbdf705961be https://www.encodeproject.org/files/ENCFF204SDM/@@download/ENCFF204SDM.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF442HXQ bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175EOK, ENCFF538JCZ, ENCFF750MIM 4626126 ENCODE Processing Pipeline 58f92d989bf4eaa67d8dd540807e2815 https://www.encodeproject.org/files/ENCFF442HXQ/@@download/ENCFF442HXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF833FCO bed narrowPeak optimal idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF276DPB, ENCFF442HXQ, ENCFF961HHN 265021 ENCODE Processing Pipeline c99ce128576687bc8a287943d3473029 https://www.encodeproject.org/files/ENCFF833FCO/@@download/ENCFF833FCO.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF869WSZ bigWig fold change over control ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175EOK, ENCFF538JCZ, ENCFF750MIM 213158831 ENCODE Processing Pipeline f8e0997277d19a4db34348e81dc1d40e https://www.encodeproject.org/files/ENCFF869WSZ/@@download/ENCFF869WSZ.bigWig hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF976CCO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF833FCO 530661 ENCODE Processing Pipeline 269cf32d95d5a3c1ca87bbdeb3cb0864 https://www.encodeproject.org/files/ENCFF976CCO/@@download/ENCFF976CCO.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF595LMV bigBed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF442HXQ 10198835 ENCODE Processing Pipeline 070e9017bb705794ae1246bf4b37e275 https://www.encodeproject.org/files/ENCFF595LMV/@@download/ENCFF595LMV.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF094HKE bigBed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276DPB 5150134 ENCODE Processing Pipeline b6e787c2ad2f5fb6b28afee461c6ccd1 https://www.encodeproject.org/files/ENCFF094HKE/@@download/ENCFF094HKE.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF797HCB bigBed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF961HHN 7642028 ENCODE Processing Pipeline e026a381205d85853195991beef4c98a https://www.encodeproject.org/files/ENCFF797HCB/@@download/ENCFF797HCB.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF678KYI bed narrowPeak conservative idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF276DPB, ENCFF442HXQ, ENCFF961HHN 195102 ENCODE Processing Pipeline 8806d20f5bf8c5c9c574005a38e55ece https://www.encodeproject.org/files/ENCFF678KYI/@@download/ENCFF678KYI.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF276DPB bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF538JCZ, ENCFF750MIM 2554768 ENCODE Processing Pipeline 713c6ee524388deaf65c14f0ec838440 https://www.encodeproject.org/files/ENCFF276DPB/@@download/ENCFF276DPB.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF961HHN bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175EOK, ENCFF750MIM 3417919 ENCODE Processing Pipeline 572f7c3e214505beabcacec7b3f66c51 https://www.encodeproject.org/files/ENCFF961HHN/@@download/ENCFF961HHN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF035OWM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF678KYI 428885 ENCODE Processing Pipeline c9786a18a8fe2217ce452a9e564f03b6 https://www.encodeproject.org/files/ENCFF035OWM/@@download/ENCFF035OWM.bigBed hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF065ZFK fastq reads ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF655KYQ 2055290732 Richard Myers, HAIB 6b80400e52399215fda9fbbbfc46bcc3 SRA:SRR6213718 https://www.encodeproject.org/files/ENCFF065ZFK/@@download/ENCFF065ZFK.fastq.gz Illumina HiSeq 2000 /files/ENCFF610WEU/ released antibody characterized with exemption missing control alignments ENCFF655KYQ fastq reads ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF065ZFK 2149295176 Richard Myers, HAIB ebc0def583aa0e9027ab011065ba4294 SRA:SRR6213718 https://www.encodeproject.org/files/ENCFF655KYQ/@@download/ENCFF655KYQ.fastq.gz Illumina HiSeq 2000 /files/ENCFF950EXK/ released antibody characterized with exemption missing control alignments ENCFF721MRA bam unfiltered alignments ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF065ZFK, ENCFF655KYQ, ENCFF807MUK 5066890224 ENCODE Processing Pipeline 03c4b671e2515d9fc0b4f4d9740035b1 https://www.encodeproject.org/files/ENCFF721MRA/@@download/ENCFF721MRA.bam hg19 released antibody characterized with exemption missing control alignments ENCFF834AOC bam alignments ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF065ZFK, ENCFF655KYQ, ENCFF807MUK 3803079480 ENCODE Processing Pipeline 4ccdddccda0a08ae6acaa0feafd6b233 https://www.encodeproject.org/files/ENCFF834AOC/@@download/ENCFF834AOC.bam hg19 released antibody characterized with exemption missing control alignments ENCFF405UYE bam alignments ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF065ZFK, ENCFF643CGH, ENCFF655KYQ 3805033588 ENCODE Processing Pipeline 3cebcfe7f124fed1d057ed42808906fb https://www.encodeproject.org/files/ENCFF405UYE/@@download/ENCFF405UYE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF177THV bam unfiltered alignments ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF065ZFK, ENCFF643CGH, ENCFF655KYQ 5088195359 ENCODE Processing Pipeline e7e9e8e7c5dd545ce99dfe07737e32ba https://www.encodeproject.org/files/ENCFF177THV/@@download/ENCFF177THV.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF115AYZ bigWig fold change over control ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF405UYE 1400599238 ENCODE Processing Pipeline cc141589b6625e062e14c950854cb123 https://www.encodeproject.org/files/ENCFF115AYZ/@@download/ENCFF115AYZ.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF294GHG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF353CLB 274511 ENCODE Processing Pipeline 16dc59a9406964a72cb79ae551957ae9 https://www.encodeproject.org/files/ENCFF294GHG/@@download/ENCFF294GHG.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF991KEG bigWig signal p-value ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF405UYE 1285133040 ENCODE Processing Pipeline b0b401da9a38a7c084fba399a367abf1 https://www.encodeproject.org/files/ENCFF991KEG/@@download/ENCFF991KEG.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF779OXM bigBed narrowPeak peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF565FJL 11705045 ENCODE Processing Pipeline e63bc333539e755b335b9e2ba388674e https://www.encodeproject.org/files/ENCFF779OXM/@@download/ENCFF779OXM.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF353CLB bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF419RSJ, ENCFF565FJL 110899 ENCODE Processing Pipeline 91731521329da721a52dd2d00f7a41bb https://www.encodeproject.org/files/ENCFF353CLB/@@download/ENCFF353CLB.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF565FJL bed narrowPeak peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF405UYE 6237899 ENCODE Processing Pipeline 9726d7116137fe0a35be4ff58aa860df https://www.encodeproject.org/files/ENCFF565FJL/@@download/ENCFF565FJL.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF394GAG bigWig signal p-value ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF834AOC 1418409950 ENCODE Processing Pipeline e9c8afc6f5544b232fc8adc993602248 https://www.encodeproject.org/files/ENCFF394GAG/@@download/ENCFF394GAG.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF707TYG bigWig fold change over control ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF834AOC 1396715960 ENCODE Processing Pipeline 3892042eeee45663439e02d4eb98e62d https://www.encodeproject.org/files/ENCFF707TYG/@@download/ENCFF707TYG.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF761ORT bed narrowPeak peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF834AOC 6235660 ENCODE Processing Pipeline 6aade674d7b187f48fb318dd92c2767c https://www.encodeproject.org/files/ENCFF761ORT/@@download/ENCFF761ORT.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF434UOV bigBed narrowPeak peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF761ORT 11691010 ENCODE Processing Pipeline 8a674273dc9b8b041ff5f9b9d0392ab1 https://www.encodeproject.org/files/ENCFF434UOV/@@download/ENCFF434UOV.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF934XEQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF761ORT 110718 ENCODE Processing Pipeline 4245a88f400cf51b7aefd5039a071c7b https://www.encodeproject.org/files/ENCFF934XEQ/@@download/ENCFF934XEQ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF712KAB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF934XEQ 272423 ENCODE Processing Pipeline 28546c2ccdd11bf3d64c67f361b3cd41 https://www.encodeproject.org/files/ENCFF712KAB/@@download/ENCFF712KAB.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF530VUW fastq reads ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF857XTL 2749724869 Michael Snyder, Stanford f9bee55d4da84e84475616a93ff0f5e0 SRA:SRR6214319 https://www.encodeproject.org/files/ENCFF530VUW/@@download/ENCFF530VUW.fastq.gz Illumina HiSeq 4000 /files/ENCFF541ZMR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF857XTL fastq reads ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF530VUW 2492761404 Michael Snyder, Stanford 6a1b31065f44927124b6028132d09eb3 SRA:SRR6214319 https://www.encodeproject.org/files/ENCFF857XTL/@@download/ENCFF857XTL.fastq.gz Illumina HiSeq 4000 /files/ENCFF959EYL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF662WGE bam unfiltered alignments ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF530VUW, ENCFF643CGH, ENCFF857XTL 4711038657 ENCODE Processing Pipeline 3269bd4360adec6107b72544f19236fe https://www.encodeproject.org/files/ENCFF662WGE/@@download/ENCFF662WGE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF490SNQ bam alignments ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF530VUW, ENCFF643CGH, ENCFF857XTL 3633523446 ENCODE Processing Pipeline 985cec4270ee99086706e127520d4161 https://www.encodeproject.org/files/ENCFF490SNQ/@@download/ENCFF490SNQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF321AOM bam unfiltered alignments ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF530VUW, ENCFF807MUK, ENCFF857XTL 4708589158 ENCODE Processing Pipeline 4ff458a040a1db21aa573a359aafd059 https://www.encodeproject.org/files/ENCFF321AOM/@@download/ENCFF321AOM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF891NAK bam alignments ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF530VUW, ENCFF807MUK, ENCFF857XTL 3631553059 ENCODE Processing Pipeline 168ab64d1c3a067556fcd678268b4b96 https://www.encodeproject.org/files/ENCFF891NAK/@@download/ENCFF891NAK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF199CZQ bigWig signal p-value ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF570ZSH, ENCFF891NAK 1285036040 ENCODE Processing Pipeline e012b0f0f03cbfae5cd78403879acb35 https://www.encodeproject.org/files/ENCFF199CZQ/@@download/ENCFF199CZQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF278KRN bigBed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF872LIM 11590566 ENCODE Processing Pipeline b77c9cff25314c25cee2c61ae9b8a6eb https://www.encodeproject.org/files/ENCFF278KRN/@@download/ENCFF278KRN.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF627DHJ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF872LIM 727137 ENCODE Processing Pipeline e6357aa39a54b4f2d04f11d8a4f3cb5c https://www.encodeproject.org/files/ENCFF627DHJ/@@download/ENCFF627DHJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF539JDZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF627DHJ 1284829 ENCODE Processing Pipeline f506283e547b568cb49dcc79065dbc2c https://www.encodeproject.org/files/ENCFF539JDZ/@@download/ENCFF539JDZ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF610WYQ bigWig fold change over control ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF570ZSH, ENCFF891NAK 1194272889 ENCODE Processing Pipeline 0a5219d1516f273a6f89e6d55c4af6ec https://www.encodeproject.org/files/ENCFF610WYQ/@@download/ENCFF610WYQ.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF872LIM bed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF570ZSH, ENCFF891NAK 6375548 ENCODE Processing Pipeline 098ff0d0ac500604d6bb35c8ef775399 https://www.encodeproject.org/files/ENCFF872LIM/@@download/ENCFF872LIM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF664IDY bigWig signal p-value ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF490SNQ, ENCFF556CQT 1294289919 ENCODE Processing Pipeline cf83a877e40ec2725018f712c79b8b25 https://www.encodeproject.org/files/ENCFF664IDY/@@download/ENCFF664IDY.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF114FNT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF814SXM 731471 ENCODE Processing Pipeline be22e19640250c3acb7a10215209ac9f https://www.encodeproject.org/files/ENCFF114FNT/@@download/ENCFF114FNT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF350UER bigWig fold change over control ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF490SNQ, ENCFF556CQT 1210771726 ENCODE Processing Pipeline 94ede7f1b75ae263be375f17be31433a https://www.encodeproject.org/files/ENCFF350UER/@@download/ENCFF350UER.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF742DLB bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF114FNT 1297150 ENCODE Processing Pipeline 00995b83b23cdfce82c465ddb2f1fa4b https://www.encodeproject.org/files/ENCFF742DLB/@@download/ENCFF742DLB.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF814SXM bed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF490SNQ, ENCFF556CQT 6399073 ENCODE Processing Pipeline 6d2063004b505b0d11a94af358112411 https://www.encodeproject.org/files/ENCFF814SXM/@@download/ENCFF814SXM.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF328BBZ bigBed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF814SXM 11637161 ENCODE Processing Pipeline 854a320e2cbd8ba71abcde0b2b79bc90 https://www.encodeproject.org/files/ENCFF328BBZ/@@download/ENCFF328BBZ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000NCP bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NDA 1852463805 Richard Myers, HAIB 685cef18a808f8d5a9af539edd054387 https://www.encodeproject.org/files/ENCFF000NCP/@@download/ENCFF000NCP.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NCQ bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NDD 1729457141 Richard Myers, HAIB ca09e59225e24d21e55bd9251e7ce8a6 https://www.encodeproject.org/files/ENCFF000NCQ/@@download/ENCFF000NCQ.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NCR bigWig raw signal ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 35135314 Richard Myers, HAIB 33a2dda2c168eefbb8ab3cfc2f88dee1 https://www.encodeproject.org/files/ENCFF000NCR/@@download/ENCFF000NCR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF000NCT bigWig raw signal ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 35440108 Richard Myers, HAIB d7cb06c48a98b82b88dac514ece6fe22 https://www.encodeproject.org/files/ENCFF000NCT/@@download/ENCFF000NCT.bigWig hg19 released control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NDA fastq reads ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1227738010 Richard Myers, HAIB 738672594ec55ce52316c8ce523491a1 https://www.encodeproject.org/files/ENCFF000NDA/@@download/ENCFF000NDA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGC/ released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NDD fastq reads ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1515872249 Richard Myers, HAIB ea5bffd4ab2f3c719c28a3b8786d871e https://www.encodeproject.org/files/ENCFF000NDD/@@download/ENCFF000NDD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGC/ released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF244PWP bam unfiltered alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NDD, ENCFF807MUK 1800259238 ENCODE Processing Pipeline 67c6baa64b5ea87030cd3957a67e292a https://www.encodeproject.org/files/ENCFF244PWP/@@download/ENCFF244PWP.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF420KGI bam unfiltered alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NDA, ENCFF643CGH 1460184255 ENCODE Processing Pipeline 4eeb9a4a17babefbbb35107502eecd89 https://www.encodeproject.org/files/ENCFF420KGI/@@download/ENCFF420KGI.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF717HZW bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NDA, ENCFF643CGH 360259329 ENCODE Processing Pipeline 0c6aeebcc154aae304d24aa9da6074dc https://www.encodeproject.org/files/ENCFF717HZW/@@download/ENCFF717HZW.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF614XTC bam unfiltered alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NDD, ENCFF643CGH 1803336805 ENCODE Processing Pipeline 6bd5aa88f8e256a876f2a5987261b9be https://www.encodeproject.org/files/ENCFF614XTC/@@download/ENCFF614XTC.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF901AZD bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NDD, ENCFF807MUK 437951298 ENCODE Processing Pipeline 2189b3ba5e65fee45fe438b32afa4fc3 https://www.encodeproject.org/files/ENCFF901AZD/@@download/ENCFF901AZD.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF122SVL bam unfiltered alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NDA, ENCFF807MUK 1457368787 ENCODE Processing Pipeline b019fce1fe4a2cd299d69393a1bc7e61 https://www.encodeproject.org/files/ENCFF122SVL/@@download/ENCFF122SVL.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF105WJU bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NDD, ENCFF643CGH 437869432 ENCODE Processing Pipeline 56f3a0d30ebd4c9d8e7504ea6fe50187 https://www.encodeproject.org/files/ENCFF105WJU/@@download/ENCFF105WJU.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF579FIX bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NDA, ENCFF807MUK 360598553 ENCODE Processing Pipeline 20f0ee2c209bce27f929b24872838a7b https://www.encodeproject.org/files/ENCFF579FIX/@@download/ENCFF579FIX.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF108ULS bigWig signal p-value ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF686SSI 300677488 ENCODE Processing Pipeline ded2d08c22027f34caa7911ea668a5b9 https://www.encodeproject.org/files/ENCFF108ULS/@@download/ENCFF108ULS.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF780TBX bigWig signal p-value ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF901AZD 351490063 ENCODE Processing Pipeline 53b4219e9bf86f1f8844d3ba60ea7210 https://www.encodeproject.org/files/ENCFF780TBX/@@download/ENCFF780TBX.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF197KJU bigWig signal p-value ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF579FIX, ENCFF686SSI, ENCFF901AZD 328514041 ENCODE Processing Pipeline f6e6c074fa8111403dc251d8e29fdc81 https://www.encodeproject.org/files/ENCFF197KJU/@@download/ENCFF197KJU.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF617SRR bigWig fold change over control ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF686SSI 154667569 ENCODE Processing Pipeline 2d6e1f69f5a2254c6af4e129be9fe5e4 https://www.encodeproject.org/files/ENCFF617SRR/@@download/ENCFF617SRR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF113FIS bigWig fold change over control ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF901AZD 194857600 ENCODE Processing Pipeline 9f9998dddc404e26f009950723bc538e https://www.encodeproject.org/files/ENCFF113FIS/@@download/ENCFF113FIS.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF686KTR bigWig fold change over control ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF579FIX, ENCFF686SSI, ENCFF901AZD 319120560 ENCODE Processing Pipeline 1fbb91a3190d78c6269714c393431ef0 https://www.encodeproject.org/files/ENCFF686KTR/@@download/ENCFF686KTR.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF718YNI bigBed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF810TPO 10350594 ENCODE Processing Pipeline 0689c5f18d05dee5aabb85cc37781064 https://www.encodeproject.org/files/ENCFF718YNI/@@download/ENCFF718YNI.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF657TOE bigBed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF900AOD 12959778 ENCODE Processing Pipeline 61370721517663909cefc57e9c999000 https://www.encodeproject.org/files/ENCFF657TOE/@@download/ENCFF657TOE.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF495YRW bed narrowPeak optimal idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF810TPO, ENCFF900AOD, ENCFF918SQN 187680 ENCODE Processing Pipeline da6ed4c9e0e8cd425a6062a294c924dd https://www.encodeproject.org/files/ENCFF495YRW/@@download/ENCFF495YRW.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF918SQN bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF686SSI 4127101 ENCODE Processing Pipeline e703e83a6128f3b4ba73324c275be6e3 https://www.encodeproject.org/files/ENCFF918SQN/@@download/ENCFF918SQN.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF557CRT bigBed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF918SQN 9057385 ENCODE Processing Pipeline 3bfd5f50f3d359386c35c4e06a04b7f8 https://www.encodeproject.org/files/ENCFF557CRT/@@download/ENCFF557CRT.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF191PXP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF748NLA 363266 ENCODE Processing Pipeline 34ab457ad89fb3fa4e7e29b6691a0e05 https://www.encodeproject.org/files/ENCFF191PXP/@@download/ENCFF191PXP.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF569GGB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF495YRW 376359 ENCODE Processing Pipeline 2e7612125a8169dcd6be28293e5b2f56 https://www.encodeproject.org/files/ENCFF569GGB/@@download/ENCFF569GGB.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF810TPO bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF901AZD 4567282 ENCODE Processing Pipeline c5d01a2bb3ce1f1091977d749d7e3002 https://www.encodeproject.org/files/ENCFF810TPO/@@download/ENCFF810TPO.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF900AOD bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF579FIX, ENCFF686SSI, ENCFF901AZD 5429853 ENCODE Processing Pipeline f475dea46b41a8d4bc6d593f4d09a50f https://www.encodeproject.org/files/ENCFF900AOD/@@download/ENCFF900AOD.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF748NLA bed narrowPeak conservative idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF810TPO, ENCFF900AOD, ENCFF918SQN 179235 ENCODE Processing Pipeline 8ee3643632a29351a9572d0cae6f21c4 https://www.encodeproject.org/files/ENCFF748NLA/@@download/ENCFF748NLA.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF518MEV bigWig signal p-value ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105WJU, ENCFF291OFI, ENCFF717HZW 326763513 ENCODE Processing Pipeline 4348be021d13e9234678173f47f259ee https://www.encodeproject.org/files/ENCFF518MEV/@@download/ENCFF518MEV.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF224MXA bigWig fold change over control ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF105WJU, ENCFF291OFI 194486425 ENCODE Processing Pipeline fe9da5c1bd07c7a0d8aac87f4a2ce9b0 https://www.encodeproject.org/files/ENCFF224MXA/@@download/ENCFF224MXA.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF789DUG bigWig signal p-value ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF105WJU, ENCFF291OFI 273214748 ENCODE Processing Pipeline 0d6671fda49f11aecf7a09e3131319fa https://www.encodeproject.org/files/ENCFF789DUG/@@download/ENCFF789DUG.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF080AGG bigWig signal p-value ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291OFI, ENCFF717HZW 280478399 ENCODE Processing Pipeline 278e360723d1e270c05f66d4fce55bf3 https://www.encodeproject.org/files/ENCFF080AGG/@@download/ENCFF080AGG.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF165HHT bigWig fold change over control ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291OFI, ENCFF717HZW 154806967 ENCODE Processing Pipeline 7d6050161bc6e0e32c212e5b95de647b https://www.encodeproject.org/files/ENCFF165HHT/@@download/ENCFF165HHT.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF463DJO bed narrowPeak optimal idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF272HTB, ENCFF419RSJ, ENCFF512HYZ, ENCFF817PTJ 183109 ENCODE Processing Pipeline 24b1326c1973cf122ea2086fdbd46674 https://www.encodeproject.org/files/ENCFF463DJO/@@download/ENCFF463DJO.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF525GZV bigWig fold change over control ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105WJU, ENCFF291OFI, ENCFF717HZW 315059173 ENCODE Processing Pipeline 0cd37144dcf6d0d912cc5d74ca237faf https://www.encodeproject.org/files/ENCFF525GZV/@@download/ENCFF525GZV.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF512HYZ bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF291OFI, ENCFF717HZW 3997813 ENCODE Processing Pipeline 457f80252e55cceb7facae279b3e4906 https://www.encodeproject.org/files/ENCFF512HYZ/@@download/ENCFF512HYZ.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF817PTJ bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF105WJU, ENCFF291OFI 4419903 ENCODE Processing Pipeline e6c96478d719fe1b008b84f7bfa5d19c https://www.encodeproject.org/files/ENCFF817PTJ/@@download/ENCFF817PTJ.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF272HTB bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105WJU, ENCFF291OFI, ENCFF717HZW 5331216 ENCODE Processing Pipeline 17f173d8e0660fc3de817d89f29ecb16 https://www.encodeproject.org/files/ENCFF272HTB/@@download/ENCFF272HTB.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF035GCR bigBed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF512HYZ 8893538 ENCODE Processing Pipeline efe30334d8fe3b193470a2cb78e903b6 https://www.encodeproject.org/files/ENCFF035GCR/@@download/ENCFF035GCR.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF894WQX bigBed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF817PTJ 10162260 ENCODE Processing Pipeline ef9b95dd087c1c83c4a0a2b1a81f6416 https://www.encodeproject.org/files/ENCFF894WQX/@@download/ENCFF894WQX.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF541WQF bigBed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF272HTB 12931553 ENCODE Processing Pipeline 9cc0b43a607f4f6513b65af3d84e5bb6 https://www.encodeproject.org/files/ENCFF541WQF/@@download/ENCFF541WQF.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF642VPT bed narrowPeak conservative idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF272HTB, ENCFF419RSJ, ENCFF512HYZ, ENCFF817PTJ 180683 ENCODE Processing Pipeline 6c5c46e986c7119df8c958f08b2756ec https://www.encodeproject.org/files/ENCFF642VPT/@@download/ENCFF642VPT.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF654LGC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF642VPT 367709 ENCODE Processing Pipeline 4f6c4fc5b3333fbb37b0f89b1e474730 https://www.encodeproject.org/files/ENCFF654LGC/@@download/ENCFF654LGC.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF982WII bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF463DJO 372246 ENCODE Processing Pipeline 5476feae24d08a449f49036942842f48 https://www.encodeproject.org/files/ENCFF982WII/@@download/ENCFF982WII.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF000ZCQ bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VPG 2238190 Michael Snyder, Stanford 09ce0d5343e69c54f27508bf1048655a https://www.encodeproject.org/files/ENCFF000ZCQ/@@download/ENCFF000ZCQ.bigBed hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCR fastq reads ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1113181662 Michael Snyder, Stanford cc3e5365dc5bb518fbbcfdc6b19a0855 https://www.encodeproject.org/files/ENCFF000ZCR/@@download/ENCFF000ZCR.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released low read length, low read depth, inconsistent control read length, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCT fastq reads ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 991458245 Michael Snyder, Stanford fd1823cafc13dab93981e74698dc53c5 https://www.encodeproject.org/files/ENCFF000ZCT/@@download/ENCFF000ZCT.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released low read length, low read depth, inconsistent control read length, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000ZCV bigWig signal ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 295091661 Michael Snyder, Stanford 92d3d32965b51a158e43e416fac6be95 https://www.encodeproject.org/files/ENCFF000ZCV/@@download/ENCFF000ZCV.bigWig hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZCW bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 1 342152211 Michael Snyder, Stanford 5ff1973455fe5201a34f49f0cd145f73 https://www.encodeproject.org/files/ENCFF000ZCW/@@download/ENCFF000ZCW.bam hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000ZCX bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 1 442224686 Michael Snyder, Stanford 553365e6ddd90efb636464540901cd6c https://www.encodeproject.org/files/ENCFF000ZCX/@@download/ENCFF000ZCX.bam hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF001VPG bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 905466 Michael Snyder, Stanford a5cc3f9197a9d86b96881b76f6d8a663 https://www.encodeproject.org/files/ENCFF001VPG/@@download/ENCFF001VPG.bed.gz hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CYO bed narrowPeak optimal idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 351292 ENCODE Consortium Analysis Working Group 44267b4dcba8700327baacc860fcbc08 https://www.encodeproject.org/files/ENCFF002CYO/@@download/ENCFF002CYO.bed.gz hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF804FLN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CYO 916263 ENCODE Consortium 014ed12a418c3d90d852d1c44d910108 https://www.encodeproject.org/files/ENCFF804FLN/@@download/ENCFF804FLN.bigBed hg19 archived low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF461FMW bam unfiltered alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCT, ENCFF643CGH 837577230 ENCODE Processing Pipeline d09e1a5291bd47eb8a0de8197d90075b https://www.encodeproject.org/files/ENCFF461FMW/@@download/ENCFF461FMW.bam GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF552IGP bam unfiltered alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCR, ENCFF643CGH 967007443 ENCODE Processing Pipeline e4690eac0f9ea881a9e77d1167575525 https://www.encodeproject.org/files/ENCFF552IGP/@@download/ENCFF552IGP.bam GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF012LYY bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCT, ENCFF643CGH 380636347 ENCODE Processing Pipeline 219bb243c27e774a1fd629bd6b0ea26e https://www.encodeproject.org/files/ENCFF012LYY/@@download/ENCFF012LYY.bam GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF314KHY bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCR, ENCFF643CGH 476394945 ENCODE Processing Pipeline 725899a94528b0a247415b5bcfd87fcd https://www.encodeproject.org/files/ENCFF314KHY/@@download/ENCFF314KHY.bam GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF978UZM bam unfiltered alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCT, ENCFF807MUK 837337500 ENCODE Processing Pipeline 79c2456d5e8dde023988121d62db88f6 https://www.encodeproject.org/files/ENCFF978UZM/@@download/ENCFF978UZM.bam hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF134SYL bam unfiltered alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCR, ENCFF807MUK 968544676 ENCODE Processing Pipeline 2312df2fcffbc3289149027afd9c26f6 https://www.encodeproject.org/files/ENCFF134SYL/@@download/ENCFF134SYL.bam hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF916JGB bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCT, ENCFF807MUK 381347388 ENCODE Processing Pipeline 5984040e0d4293715d9536cb9394d086 https://www.encodeproject.org/files/ENCFF916JGB/@@download/ENCFF916JGB.bam hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF002THP bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCR, ENCFF807MUK 477125350 ENCODE Processing Pipeline 3b662f7de84be15e252eca4ed0fe4801 https://www.encodeproject.org/files/ENCFF002THP/@@download/ENCFF002THP.bam hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF468ESM bigWig signal p-value ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF916JGB 280031833 ENCODE Processing Pipeline 42e0eb3504ad980350581731d9bdec7e https://www.encodeproject.org/files/ENCFF468ESM/@@download/ENCFF468ESM.bigWig hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF232SFM bigWig fold change over control ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF916JGB 178223526 ENCODE Processing Pipeline 554583653cc1b6dae9bdc74ef0a4ea97 https://www.encodeproject.org/files/ENCFF232SFM/@@download/ENCFF232SFM.bigWig hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF466ZQX bigWig fold change over control ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002THP, ENCFF498SAC, ENCFF732TLR, ENCFF916JGB 453845940 ENCODE Processing Pipeline 12aa9549ae6e9e21bb57fe72767cbbc2 https://www.encodeproject.org/files/ENCFF466ZQX/@@download/ENCFF466ZQX.bigWig hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF512HLJ bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF916JGB 4795321 ENCODE Processing Pipeline 3c17b1179cf2f3456c17a2153ee6c4f8 https://www.encodeproject.org/files/ENCFF512HLJ/@@download/ENCFF512HLJ.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF621XGL bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002THP, ENCFF498SAC, ENCFF732TLR, ENCFF916JGB 5966323 ENCODE Processing Pipeline bc4a9002169ced6f6306d4a4d82969bd https://www.encodeproject.org/files/ENCFF621XGL/@@download/ENCFF621XGL.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF671DOL bed narrowPeak optimal idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF507ZLI, ENCFF512HLJ, ENCFF621XGL 356609 ENCODE Processing Pipeline 64dc4d3e4a826b90341dc7f40f98f446 https://www.encodeproject.org/files/ENCFF671DOL/@@download/ENCFF671DOL.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF150VMW bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF012LYY, ENCFF156NSV, ENCFF314KHY, ENCFF715JBE 5854344 ENCODE Processing Pipeline c1ecb96748dd0e570c2a1b520209d9e1 https://www.encodeproject.org/files/ENCFF150VMW/@@download/ENCFF150VMW.bed.gz GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF793HLM bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF150VMW 13253288 ENCODE Processing Pipeline b6fbbd29bde0c18b87759f7d768d3c28 https://www.encodeproject.org/files/ENCFF793HLM/@@download/ENCFF793HLM.bigBed GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF183WVQ bigWig fold change over control ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF002THP, ENCFF498SAC, ENCFF732TLR 292140508 ENCODE Processing Pipeline 8f2d3945ca17eb05bf49367a7516c925 https://www.encodeproject.org/files/ENCFF183WVQ/@@download/ENCFF183WVQ.bigWig hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF526KSL bigWig signal p-value ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002THP, ENCFF498SAC, ENCFF732TLR, ENCFF916JGB 510132888 ENCODE Processing Pipeline a54fb97b66dc3f686c8a2153ae2ae8e8 https://www.encodeproject.org/files/ENCFF526KSL/@@download/ENCFF526KSL.bigWig hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF642GIH bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF507ZLI 12965235 ENCODE Processing Pipeline 7086186f4c5dd44f0f59e3c080a5cae8 https://www.encodeproject.org/files/ENCFF642GIH/@@download/ENCFF642GIH.bigBed hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF613NZO bed narrowPeak conservative idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF507ZLI, ENCFF512HLJ, ENCFF621XGL 342348 ENCODE Processing Pipeline 4c28e667afc32b065cd396f9b114d290 https://www.encodeproject.org/files/ENCFF613NZO/@@download/ENCFF613NZO.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF653CAX bigWig signal p-value ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF012LYY, ENCFF156NSV, ENCFF314KHY, ENCFF715JBE 506488484 ENCODE Processing Pipeline 03f6eaed2b7d02eeb77f896edbc3e9f5 https://www.encodeproject.org/files/ENCFF653CAX/@@download/ENCFF653CAX.bigWig GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF505BKT bigWig fold change over control ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF012LYY, ENCFF156NSV, ENCFF314KHY, ENCFF715JBE 446866396 ENCODE Processing Pipeline 988dfbb2f79c6fd0318e1c32a1ecbb0c https://www.encodeproject.org/files/ENCFF505BKT/@@download/ENCFF505BKT.bigWig GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF161BNR bed narrowPeak conservative idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF150VMW, ENCFF284WGW, ENCFF419RSJ, ENCFF462NBV 344314 ENCODE Processing Pipeline 8f91855d2208a725a3e04da0de1f0322 https://www.encodeproject.org/files/ENCFF161BNR/@@download/ENCFF161BNR.bed.gz GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF299EPH bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF621XGL 13256076 ENCODE Processing Pipeline 726034fbbf68a3ee5cb3db4adc977c7b https://www.encodeproject.org/files/ENCFF299EPH/@@download/ENCFF299EPH.bigBed hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF383ZNR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF161BNR 843154 ENCODE Processing Pipeline 13688771650787b155c24db08a248911 https://www.encodeproject.org/files/ENCFF383ZNR/@@download/ENCFF383ZNR.bigBed GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF035DJD bigWig signal p-value ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF002THP, ENCFF498SAC, ENCFF732TLR 381956547 ENCODE Processing Pipeline d37de779051785b0bcddb46d4166e974 https://www.encodeproject.org/files/ENCFF035DJD/@@download/ENCFF035DJD.bigWig hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF507ZLI bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF002THP, ENCFF498SAC, ENCFF732TLR 5173454 ENCODE Processing Pipeline 8f6f2b56cbac1449b28960c1e518cc38 https://www.encodeproject.org/files/ENCFF507ZLI/@@download/ENCFF507ZLI.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF603ZSN bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF512HLJ 10314072 ENCODE Processing Pipeline f2be37eb1cd8337bdb090c947e431b6e https://www.encodeproject.org/files/ENCFF603ZSN/@@download/ENCFF603ZSN.bigBed hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF481NFW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF613NZO 837668 ENCODE Processing Pipeline e707762bc2c72ed9a446cb09dc9e3ca7 https://www.encodeproject.org/files/ENCFF481NFW/@@download/ENCFF481NFW.bigBed hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF140XDQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF671DOL 863885 ENCODE Processing Pipeline 7009db408f3eab91ea8e3182c08d6b1f https://www.encodeproject.org/files/ENCFF140XDQ/@@download/ENCFF140XDQ.bigBed hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF227CXX bigWig signal p-value ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF156NSV, ENCFF314KHY, ENCFF715JBE 433896569 ENCODE Processing Pipeline 4855b2544bca816e95132243e4e33e2c https://www.encodeproject.org/files/ENCFF227CXX/@@download/ENCFF227CXX.bigWig GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF012EFE bigWig fold change over control ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF156NSV, ENCFF314KHY, ENCFF715JBE 292736075 ENCODE Processing Pipeline 0a7846c2f86731b7e942255f3ebe1b26 https://www.encodeproject.org/files/ENCFF012EFE/@@download/ENCFF012EFE.bigWig GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF746QBD bigWig signal p-value ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF012LYY, ENCFF156NSV 284566226 ENCODE Processing Pipeline bb8b2f567d1a753f17d33e114a30c6bb https://www.encodeproject.org/files/ENCFF746QBD/@@download/ENCFF746QBD.bigWig GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF462NBV bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF156NSV, ENCFF314KHY, ENCFF715JBE 5112577 ENCODE Processing Pipeline f96968730b5c74b49be1b60a153f8627 https://www.encodeproject.org/files/ENCFF462NBV/@@download/ENCFF462NBV.bed.gz GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF284WGW bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF012LYY, ENCFF156NSV 4682405 ENCODE Processing Pipeline 34f0551e2ede31364fd739542c3554fb https://www.encodeproject.org/files/ENCFF284WGW/@@download/ENCFF284WGW.bed.gz GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF418WGX bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF284WGW 10097052 ENCODE Processing Pipeline f8611dcc538db3fd355ccf97bde2fa6b https://www.encodeproject.org/files/ENCFF418WGX/@@download/ENCFF418WGX.bigBed GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF403TAF bed narrowPeak optimal idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF150VMW, ENCFF284WGW, ENCFF419RSJ, ENCFF462NBV 365960 ENCODE Processing Pipeline 619cd935342a7e3844fee07a9bd87d84 https://www.encodeproject.org/files/ENCFF403TAF/@@download/ENCFF403TAF.bed.gz GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF800EJL bigBed narrowPeak optimal idr thresholded peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF403TAF 881435 ENCODE Processing Pipeline ddf87e08ae56f77e497f8fb25f4c5371 https://www.encodeproject.org/files/ENCFF800EJL/@@download/ENCFF800EJL.bigBed GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF243KHO bigWig fold change over control ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF012LYY, ENCFF156NSV 180025296 ENCODE Processing Pipeline 344a27d0923e9f187425b2101b2929f2 https://www.encodeproject.org/files/ENCFF243KHO/@@download/ENCFF243KHO.bigWig GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF977FEU bigBed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF462NBV 12940384 ENCODE Processing Pipeline ab3715f6683e731f14f37022d87f21f7 https://www.encodeproject.org/files/ENCFF977FEU/@@download/ENCFF977FEU.bigBed GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF715ESG fastq reads ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF740EMX 2004139413 Michael Snyder, Stanford 3555c0f735806b1eda7da35d3a4841dd SRA:SRR6214390 https://www.encodeproject.org/files/ENCFF715ESG/@@download/ENCFF715ESG.fastq.gz Illumina HiSeq 4000 /files/ENCFF639MIH/ released antibody characterized with exemption ENCFF740EMX fastq reads ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF715ESG 2335955563 Michael Snyder, Stanford 583c6c7dc2a59fa25d8f206b2b2931d2 SRA:SRR6214390 https://www.encodeproject.org/files/ENCFF740EMX/@@download/ENCFF740EMX.fastq.gz Illumina HiSeq 4000 /files/ENCFF633TME/ released antibody characterized with exemption ENCFF682IYE bam unfiltered alignments ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF715ESG, ENCFF740EMX, ENCFF807MUK 4413348481 ENCODE Processing Pipeline 49d4a1b2163fbf742ab9de4347af83e7 https://www.encodeproject.org/files/ENCFF682IYE/@@download/ENCFF682IYE.bam hg19 released antibody characterized with exemption ENCFF656OLR bam alignments ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF715ESG, ENCFF740EMX, ENCFF807MUK 3374746671 ENCODE Processing Pipeline ba9f2648e8c9e7794167ebf66923f548 https://www.encodeproject.org/files/ENCFF656OLR/@@download/ENCFF656OLR.bam hg19 released antibody characterized with exemption ENCFF861XEB bam unfiltered alignments ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF715ESG, ENCFF740EMX 4422482423 ENCODE Processing Pipeline f7630d763159213c5397b07b90885408 https://www.encodeproject.org/files/ENCFF861XEB/@@download/ENCFF861XEB.bam GRCh38 released antibody characterized with exemption ENCFF123BAK bam alignments ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF715ESG, ENCFF740EMX 3378272171 ENCODE Processing Pipeline b4460b304764802c67f989755a6e361a https://www.encodeproject.org/files/ENCFF123BAK/@@download/ENCFF123BAK.bam GRCh38 released antibody characterized with exemption ENCFF152AIF bigWig signal p-value ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF656OLR, ENCFF664ITJ 1119351828 ENCODE Processing Pipeline 2203b6ed9950b6444364284dedd4b9ef https://www.encodeproject.org/files/ENCFF152AIF/@@download/ENCFF152AIF.bigWig hg19 released antibody characterized with exemption ENCFF398DXB bigWig fold change over control ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF656OLR, ENCFF664ITJ 1155909984 ENCODE Processing Pipeline b60b7259259eff350e014a7092bbf93a https://www.encodeproject.org/files/ENCFF398DXB/@@download/ENCFF398DXB.bigWig hg19 released antibody characterized with exemption ENCFF163VGN bigBed narrowPeak peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF422OZA 11364166 ENCODE Processing Pipeline b63f2a2f2328a38d5f87a8bbcea86b5c https://www.encodeproject.org/files/ENCFF163VGN/@@download/ENCFF163VGN.bigBed hg19 released antibody characterized with exemption ENCFF422OZA bed narrowPeak peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF656OLR, ENCFF664ITJ 6384681 ENCODE Processing Pipeline bf13a5c0cd74b8c9d4fc75aee057b04d https://www.encodeproject.org/files/ENCFF422OZA/@@download/ENCFF422OZA.bed.gz hg19 released antibody characterized with exemption ENCFF638MFT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF422OZA 267460 ENCODE Processing Pipeline d88395e89648d9077e7076241b1eea64 https://www.encodeproject.org/files/ENCFF638MFT/@@download/ENCFF638MFT.bed.gz hg19 released antibody characterized with exemption ENCFF097SCR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF638MFT 591680 ENCODE Processing Pipeline 9fb5528fa151a6462d36e4c1f13b3e91 https://www.encodeproject.org/files/ENCFF097SCR/@@download/ENCFF097SCR.bigBed hg19 released antibody characterized with exemption ENCFF850POC bigWig signal p-value ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF123BAK, ENCFF696CNP 1091836717 ENCODE Processing Pipeline 01d32cfcd6e17799df690d5822e495fe https://www.encodeproject.org/files/ENCFF850POC/@@download/ENCFF850POC.bigWig GRCh38 released antibody characterized with exemption ENCFF824JNI bigWig fold change over control ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF123BAK, ENCFF696CNP 1156277137 ENCODE Processing Pipeline 888be1786ca14b5ea2eea0c9bc130301 https://www.encodeproject.org/files/ENCFF824JNI/@@download/ENCFF824JNI.bigWig GRCh38 released antibody characterized with exemption ENCFF513WHF bigBed narrowPeak peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF579MSA 11361878 ENCODE Processing Pipeline 524126723324d3a2715546d585d1adbe https://www.encodeproject.org/files/ENCFF513WHF/@@download/ENCFF513WHF.bigBed GRCh38 released antibody characterized with exemption ENCFF626AFW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF579MSA 261952 ENCODE Processing Pipeline 569d2b976970885c062f3773f8fe819f https://www.encodeproject.org/files/ENCFF626AFW/@@download/ENCFF626AFW.bed.gz GRCh38 released antibody characterized with exemption ENCFF579MSA bed narrowPeak peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF123BAK, ENCFF696CNP 6370669 ENCODE Processing Pipeline 493efbebbb85af0c35361003e81fb7ea https://www.encodeproject.org/files/ENCFF579MSA/@@download/ENCFF579MSA.bed.gz GRCh38 released antibody characterized with exemption ENCFF050JZX bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF626AFW 588190 ENCODE Processing Pipeline e3116a7ab9208bca0af086129b5bee86 https://www.encodeproject.org/files/ENCFF050JZX/@@download/ENCFF050JZX.bigBed GRCh38 released antibody characterized with exemption ENCFF000BNJ bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000BNS 546914746 Bradley Bernstein, Broad 841b09258565ecd1debda504ee0e63a3 https://www.encodeproject.org/files/ENCFF000BNJ/@@download/ENCFF000BNJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF000BNK bigBed broadPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001SXS 2913420 Bradley Bernstein, Broad 3e5398695ed35291dbcd3429e399584e https://www.encodeproject.org/files/ENCFF000BNK/@@download/ENCFF000BNK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF000BNL bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000BNU 875027355 Bradley Bernstein, Broad edb675957cb2734593dae744a707f0f2 https://www.encodeproject.org/files/ENCFF000BNL/@@download/ENCFF000BNL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF000BNN bigWig signal ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 420887245 Bradley Bernstein, Broad 578ae0f77dfcae8d8da3e128f88a3113 https://www.encodeproject.org/files/ENCFF000BNN/@@download/ENCFF000BNN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, NTR biosample insufficient read depth missing control alignments ENCFF000BNS fastq reads ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 705656993 Bradley Bernstein, Broad a9c4eea39fb1bd15aee29e5024c39b70 https://www.encodeproject.org/files/ENCFF000BNS/@@download/ENCFF000BNS.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000BNR/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF000BNU fastq reads ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 962712212 Bradley Bernstein, Broad 9e98237266518c7788f30bc09372ed08 https://www.encodeproject.org/files/ENCFF000BNU/@@download/ENCFF000BNU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BNO/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF001SXS bed broadPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1586720 Bradley Bernstein, Broad 4a89bba77dc76dca4dfc6d98bc086ccc https://www.encodeproject.org/files/ENCFF001SXS/@@download/ENCFF001SXS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, NTR biosample insufficient read depth missing control alignments ENCFF002CEF bed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 962316 ENCODE Consortium Analysis Working Group f40df1c037735f92207b24ec5333b3db https://www.encodeproject.org/files/ENCFF002CEF/@@download/ENCFF002CEF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, NTR biosample insufficient read depth missing control alignments ENCFF119ATG bigBed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CEF 2008079 ENCODE Consortium 3d771d68c3d6ae9a459b180e21c5b065 https://www.encodeproject.org/files/ENCFF119ATG/@@download/ENCFF119ATG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF923YMZ bam unfiltered alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BNS, ENCFF643CGH 830061306 ENCODE Processing Pipeline ebb9280ec7bd535d9bb6d6bc7e2729eb https://www.encodeproject.org/files/ENCFF923YMZ/@@download/ENCFF923YMZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF275OTT bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BNS, ENCFF643CGH 250937663 ENCODE Processing Pipeline 0c55dd33da9a46450c42193802647b65 https://www.encodeproject.org/files/ENCFF275OTT/@@download/ENCFF275OTT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF408DZP bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BNU, ENCFF643CGH 674152043 ENCODE Processing Pipeline 7e55ac6f2860ff178479a3b4390f9b01 https://www.encodeproject.org/files/ENCFF408DZP/@@download/ENCFF408DZP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF967GZJ bam unfiltered alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BNU, ENCFF643CGH 1224869468 ENCODE Processing Pipeline 5d7c808dde71b0c559501e28ebd66cdb https://www.encodeproject.org/files/ENCFF967GZJ/@@download/ENCFF967GZJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF796TAA bam unfiltered alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BNS, ENCFF807MUK 828048322 ENCODE Processing Pipeline 0e2e99d2d391941fc41e845cba81443b https://www.encodeproject.org/files/ENCFF796TAA/@@download/ENCFF796TAA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF276SUL bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BNS, ENCFF807MUK 251070716 ENCODE Processing Pipeline 5e0cd95b1c79b2aa9178b0114d1046ec https://www.encodeproject.org/files/ENCFF276SUL/@@download/ENCFF276SUL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF620MCZ bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BNU, ENCFF807MUK 674334507 ENCODE Processing Pipeline 03f04d4ce821a0379cd4d7216d7bbc98 https://www.encodeproject.org/files/ENCFF620MCZ/@@download/ENCFF620MCZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF682NRY bam unfiltered alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BNU, ENCFF807MUK 1220076641 ENCODE Processing Pipeline 87843fe5efec54db7c0cd757045dd416 https://www.encodeproject.org/files/ENCFF682NRY/@@download/ENCFF682NRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF282FOS bigWig fold change over control ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF408DZP 435552017 ENCODE Processing Pipeline 4d8a6ddfd921e2ed09a34192fcd577ff https://www.encodeproject.org/files/ENCFF282FOS/@@download/ENCFF282FOS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF313UTD bigWig fold change over control ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 438279425 ENCODE Processing Pipeline c9de0a945034493153eb3108b90c7b63 https://www.encodeproject.org/files/ENCFF313UTD/@@download/ENCFF313UTD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF051DQN bigWig fold change over control ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF276SUL, ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 593413536 ENCODE Processing Pipeline 20089ef470161efb265280c03a596e29 https://www.encodeproject.org/files/ENCFF051DQN/@@download/ENCFF051DQN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF748QVL bigWig fold change over control ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF276SUL, ENCFF559IIB, ENCFF900ZEG 230810512 ENCODE Processing Pipeline 9d1be761e96fc3f89776eee66afebe7b https://www.encodeproject.org/files/ENCFF748QVL/@@download/ENCFF748QVL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF527CIC bigWig signal p-value ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 758576843 ENCODE Processing Pipeline 9bc60694ffcc8103bbc2edfa10cb6839 https://www.encodeproject.org/files/ENCFF527CIC/@@download/ENCFF527CIC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF737HMZ bigWig fold change over control ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF275OTT, ENCFF408DZP 589943618 ENCODE Processing Pipeline d7ffac66a49eb5b62cec62d12e705e6c https://www.encodeproject.org/files/ENCFF737HMZ/@@download/ENCFF737HMZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF103AUV bigWig signal p-value ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF276SUL, ENCFF559IIB, ENCFF900ZEG 589722225 ENCODE Processing Pipeline 225dd33f4986e9d61cc2796ae1584cc3 https://www.encodeproject.org/files/ENCFF103AUV/@@download/ENCFF103AUV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF578INE bigWig signal p-value ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF275OTT 567268737 ENCODE Processing Pipeline a27736cde19994abf8e1590dc8958216 https://www.encodeproject.org/files/ENCFF578INE/@@download/ENCFF578INE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF048FCC bigWig fold change over control ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF275OTT 229910479 ENCODE Processing Pipeline 19dba01642beeb085c3c3afd8d9fcd30 https://www.encodeproject.org/files/ENCFF048FCC/@@download/ENCFF048FCC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF911UPX bigWig signal p-value ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF408DZP 692429980 ENCODE Processing Pipeline 073b1e8b8be867091cd0131e261cb990 https://www.encodeproject.org/files/ENCFF911UPX/@@download/ENCFF911UPX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF765JEF bigWig signal p-value ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF276SUL, ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 712015215 ENCODE Processing Pipeline 388a7db2ccd5e17b6a97ccc88a1fec51 https://www.encodeproject.org/files/ENCFF765JEF/@@download/ENCFF765JEF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF523PBP bigWig signal p-value ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF275OTT, ENCFF408DZP 830315799 ENCODE Processing Pipeline bd9cbfbd8eb1d6bc68d155f971b163f8 https://www.encodeproject.org/files/ENCFF523PBP/@@download/ENCFF523PBP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF910ILP bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF275OTT 3341754 ENCODE Processing Pipeline 33ecf88544a0b0251246ad62bb9598d0 https://www.encodeproject.org/files/ENCFF910ILP/@@download/ENCFF910ILP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF561XEB bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF408DZP 4989808 ENCODE Processing Pipeline 7e20029551d9f317fed154619a5a5537 https://www.encodeproject.org/files/ENCFF561XEB/@@download/ENCFF561XEB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF069WWW bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF275OTT, ENCFF408DZP 5592366 ENCODE Processing Pipeline 8171adc42280d2b9c038d62c723ce126 https://www.encodeproject.org/files/ENCFF069WWW/@@download/ENCFF069WWW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF988IWQ bigBed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF561XEB 11330295 ENCODE Processing Pipeline f89336096ebc1d17b0580c652eaa7033 https://www.encodeproject.org/files/ENCFF988IWQ/@@download/ENCFF988IWQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF004UUL bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF276SUL, ENCFF559IIB, ENCFF900ZEG 3342896 ENCODE Processing Pipeline bad9ba2a20281ae90ef47badcf4affeb https://www.encodeproject.org/files/ENCFF004UUL/@@download/ENCFF004UUL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF752POC bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 5034659 ENCODE Processing Pipeline d8b4df92f482063a8f062a353f3e89b0 https://www.encodeproject.org/files/ENCFF752POC/@@download/ENCFF752POC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF155KHC bigBed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF910ILP 7183237 ENCODE Processing Pipeline 194994023be233c1364a685445ec0044 https://www.encodeproject.org/files/ENCFF155KHC/@@download/ENCFF155KHC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF939ZDC bigBed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF752POC 11382318 ENCODE Processing Pipeline a6c569bc2169cd80461153f38c932c91 https://www.encodeproject.org/files/ENCFF939ZDC/@@download/ENCFF939ZDC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF315KYG bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF276SUL, ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 5567043 ENCODE Processing Pipeline 9e8de4dce5f1fff29869b85c85466c37 https://www.encodeproject.org/files/ENCFF315KYG/@@download/ENCFF315KYG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF651XOS bigBed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF004UUL 7186203 ENCODE Processing Pipeline 5afec61bafd07cc5f12f1345fcac4bda https://www.encodeproject.org/files/ENCFF651XOS/@@download/ENCFF651XOS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF292TGY bigBed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF315KYG 11540606 ENCODE Processing Pipeline 26d48778cf322829d2742696888e4947 https://www.encodeproject.org/files/ENCFF292TGY/@@download/ENCFF292TGY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF534YKC bigBed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF448MBM 1265206 ENCODE Processing Pipeline 47d58d4b5cdce6b8506a0e23197166d8 https://www.encodeproject.org/files/ENCFF534YKC/@@download/ENCFF534YKC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF448MBM bed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF004UUL, ENCFF315KYG, ENCFF752POC 727915 ENCODE Processing Pipeline 159eaf588d42788b8035074162a5131a https://www.encodeproject.org/files/ENCFF448MBM/@@download/ENCFF448MBM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF127SFR bigBed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF719TNH 1266710 ENCODE Processing Pipeline b5ec8b870f4af8ea5b6e5760b18d3ff3 https://www.encodeproject.org/files/ENCFF127SFR/@@download/ENCFF127SFR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF442INY bigBed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF069WWW 11543154 ENCODE Processing Pipeline c8bd3d7dc580a81eb029779cd50767d0 https://www.encodeproject.org/files/ENCFF442INY/@@download/ENCFF442INY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF719TNH bed narrowPeak optimal idr thresholded peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF069WWW, ENCFF419RSJ, ENCFF561XEB, ENCFF910ILP 728700 ENCODE Processing Pipeline fab71761215ccbfaf37b999af00cda28 https://www.encodeproject.org/files/ENCFF719TNH/@@download/ENCFF719TNH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF000CBZ bam alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CCK 859826555 Bradley Bernstein, Broad aab74df1dad5c409090523081cccf75e https://www.encodeproject.org/files/ENCFF000CBZ/@@download/ENCFF000CBZ.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000CCA bigBed broadPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE ENCFF001TAE 666639 Bradley Bernstein, Broad b82566e837ed4eb71c01ea790ab50e81 https://www.encodeproject.org/files/ENCFF000CCA/@@download/ENCFF000CCA.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000CCC bigWig signal ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 233190006 Bradley Bernstein, Broad f1cd48a54c6a76115eb412d590da1b51 https://www.encodeproject.org/files/ENCFF000CCC/@@download/ENCFF000CCC.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF000CCK fastq reads ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1123981474 Bradley Bernstein, Broad 5ffd208d0bf5f74166b854393b99d09f https://www.encodeproject.org/files/ENCFF000CCK/@@download/ENCFF000CCK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF001TAE bed broadPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 365700 Bradley Bernstein, Broad be0ef94bb51b4846a20b963ae52f7ed6 https://www.encodeproject.org/files/ENCFF001TAE/@@download/ENCFF001TAE.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF650RQR bam alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCK, ENCFF807MUK 454945489 ENCODE Processing Pipeline d26ec999644a1b46254e36c7e1eac6d3 https://www.encodeproject.org/files/ENCFF650RQR/@@download/ENCFF650RQR.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF714MHA bam unfiltered alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCK, ENCFF807MUK 1396564653 ENCODE Processing Pipeline 78a5af603d16add9db579e5bb9a30965 https://www.encodeproject.org/files/ENCFF714MHA/@@download/ENCFF714MHA.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF817FTZ bam alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCK, ENCFF643CGH 454550648 ENCODE Processing Pipeline cb93e9422f9ce20af0b1fcce6d04f9a8 https://www.encodeproject.org/files/ENCFF817FTZ/@@download/ENCFF817FTZ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF163KLJ bam unfiltered alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCK, ENCFF643CGH 1403282393 ENCODE Processing Pipeline 24559551e52370aac36e7415f0255b1b https://www.encodeproject.org/files/ENCFF163KLJ/@@download/ENCFF163KLJ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF667ZBS bed narrowPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF650RQR 4013435 ENCODE Processing Pipeline de80fc1248efcb8b0603f4c7ab04ce2f https://www.encodeproject.org/files/ENCFF667ZBS/@@download/ENCFF667ZBS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF297NTZ bigWig signal p-value ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF650RQR 344686792 ENCODE Processing Pipeline 31f45fa6051cdd15ffeb8f4bf9566346 https://www.encodeproject.org/files/ENCFF297NTZ/@@download/ENCFF297NTZ.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF563TWG bigWig fold change over control ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF817FTZ 213927200 ENCODE Processing Pipeline 31309f0134ea1a152cdf58f4d1a4fbe4 https://www.encodeproject.org/files/ENCFF563TWG/@@download/ENCFF563TWG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF430LQG bigWig fold change over control ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF650RQR 217018538 ENCODE Processing Pipeline ffdf5caf40369b3d1da58e63f5037ff6 https://www.encodeproject.org/files/ENCFF430LQG/@@download/ENCFF430LQG.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF355NGR bigBed narrowPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF667ZBS 9945744 ENCODE Processing Pipeline a804cb32c396c54284d1e296aeb7ff10 https://www.encodeproject.org/files/ENCFF355NGR/@@download/ENCFF355NGR.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF671JEN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF667ZBS 12882 ENCODE Processing Pipeline 1e1fa62cc678c778a5189ea5504b9c9e https://www.encodeproject.org/files/ENCFF671JEN/@@download/ENCFF671JEN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF584VGN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF671JEN 101840 ENCODE Processing Pipeline 962f586038754e4fd6414616ef9e7d04 https://www.encodeproject.org/files/ENCFF584VGN/@@download/ENCFF584VGN.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF202WRI bigWig signal p-value ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF817FTZ 312301203 ENCODE Processing Pipeline a6908decf41d07cd8135b6187860884c https://www.encodeproject.org/files/ENCFF202WRI/@@download/ENCFF202WRI.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF954TIN bed narrowPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF392XRJ, ENCFF817FTZ 3973538 ENCODE Processing Pipeline b9333bee00335986ba9f8cd1af718159 https://www.encodeproject.org/files/ENCFF954TIN/@@download/ENCFF954TIN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF827UWM bigBed narrowPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF954TIN 9916493 ENCODE Processing Pipeline 2c96e20a1f9b8349186c1d20d66fab78 https://www.encodeproject.org/files/ENCFF827UWM/@@download/ENCFF827UWM.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF747XDN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF954TIN 10741 ENCODE Processing Pipeline 622eb271ee34e8a4a61bb2a5d85e7e61 https://www.encodeproject.org/files/ENCFF747XDN/@@download/ENCFF747XDN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF945NOR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF747XDN 97204 ENCODE Processing Pipeline a212c6a3eb41be198a3e8270828d3f8e https://www.encodeproject.org/files/ENCFF945NOR/@@download/ENCFF945NOR.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000XKN bam alignments ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKT 511619748 Michael Snyder, Stanford 806c1e3344b5d2c6bb543cb7185ff337 https://www.encodeproject.org/files/ENCFF000XKN/@@download/ENCFF000XKN.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKO bigBed narrowPeak peaks ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJE 2425965 Michael Snyder, Stanford a23849d3c94dfa8f56fd4fef63ed2019 https://www.encodeproject.org/files/ENCFF000XKO/@@download/ENCFF000XKO.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XKP bam alignments ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKU 397160857 Michael Snyder, Stanford 400400a2ac63cc475a1cbeca5344ee4b https://www.encodeproject.org/files/ENCFF000XKP/@@download/ENCFF000XKP.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKR bigWig signal ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 329998677 Michael Snyder, Stanford 8b9d8e489eb29ff783ecb8e92a0d06b3 https://www.encodeproject.org/files/ENCFF000XKR/@@download/ENCFF000XKR.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XKT fastq reads ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1095079819 Michael Snyder, Stanford 172a0345fee1fbb3b34800576e1380ee https://www.encodeproject.org/files/ENCFF000XKT/@@download/ENCFF000XKT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XKU fastq reads ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1102943824 Michael Snyder, Stanford 9e3f5cac792036b78ba54d82e40d8d03 https://www.encodeproject.org/files/ENCFF000XKU/@@download/ENCFF000XKU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJE bed narrowPeak peaks ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 943886 Michael Snyder, Stanford 3caaf5c6d4131f8ccdd6936e7f5b0728 https://www.encodeproject.org/files/ENCFF001VJE/@@download/ENCFF001VJE.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CTC bed narrowPeak optimal idr thresholded peaks ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 491540 ENCODE Consortium Analysis Working Group fd13b9cd1c4c3c3b238a627f35349f2f https://www.encodeproject.org/files/ENCFF002CTC/@@download/ENCFF002CTC.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF255SBO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTC 1087514 ENCODE Consortium 9873fdb0f8ef7384393e9dd31acb5bbe https://www.encodeproject.org/files/ENCFF255SBO/@@download/ENCFF255SBO.bigBed hg19 released low read length biological replicates with identical biosample ENCFF788VTV fastq reads ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF768RJW 2470443044 Michael Snyder, Stanford 7deb46bd3b2cd5e342e0749112f36d03 SRA:SRR6213933 https://www.encodeproject.org/files/ENCFF788VTV/@@download/ENCFF788VTV.fastq.gz Illumina HiSeq 4000 /files/ENCFF196TAE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF768RJW fastq reads ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF788VTV 2929498440 Michael Snyder, Stanford 88687af96e42e668014e6d1c1790001d SRA:SRR6213933 https://www.encodeproject.org/files/ENCFF768RJW/@@download/ENCFF768RJW.fastq.gz Illumina HiSeq 4000 /files/ENCFF270OHP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF218YRX bam alignments ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF768RJW, ENCFF788VTV 3849585935 ENCODE Processing Pipeline 5e188abc12b7d1e5599c8499c3d972ba https://www.encodeproject.org/files/ENCFF218YRX/@@download/ENCFF218YRX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF566MXI bam unfiltered alignments ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF768RJW, ENCFF788VTV 5099086476 ENCODE Processing Pipeline 05ac1af1d9c7d1008892993392c10c04 https://www.encodeproject.org/files/ENCFF566MXI/@@download/ENCFF566MXI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF928EII bam unfiltered alignments ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF768RJW, ENCFF788VTV, ENCFF807MUK 5091487574 ENCODE Processing Pipeline d64df420197cb782b1331063db13a181 https://www.encodeproject.org/files/ENCFF928EII/@@download/ENCFF928EII.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF514TTH bam alignments ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF768RJW, ENCFF788VTV, ENCFF807MUK 3842807007 ENCODE Processing Pipeline 043a4d3caa0255433677139bb8f19a66 https://www.encodeproject.org/files/ENCFF514TTH/@@download/ENCFF514TTH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF260VJY bigWig signal p-value ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF514TTH, ENCFF576YJV 1105654809 ENCODE Processing Pipeline c186a58e91e8c98a4bcd7ee8d5615df0 https://www.encodeproject.org/files/ENCFF260VJY/@@download/ENCFF260VJY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF666TUC bigWig fold change over control ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF514TTH, ENCFF576YJV 1303115408 ENCODE Processing Pipeline 8f3ba9f3ab45a3a95528355891c5f9be https://www.encodeproject.org/files/ENCFF666TUC/@@download/ENCFF666TUC.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF419LNJ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF940TNN 200018 ENCODE Processing Pipeline bca8098ca4440c91d330ae90d2789163 https://www.encodeproject.org/files/ENCFF419LNJ/@@download/ENCFF419LNJ.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF406GXU bed narrowPeak peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF514TTH, ENCFF576YJV 5561763 ENCODE Processing Pipeline 742eb192e5271788688432c6ca1e5c66 https://www.encodeproject.org/files/ENCFF406GXU/@@download/ENCFF406GXU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF940TNN bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF406GXU 92326 ENCODE Processing Pipeline 3674c200c1620910d45c05a8bab1d32d https://www.encodeproject.org/files/ENCFF940TNN/@@download/ENCFF940TNN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF888DLH bigBed narrowPeak peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF406GXU 11664880 ENCODE Processing Pipeline 86d16b2bd3aa4c23a194591dddffb843 https://www.encodeproject.org/files/ENCFF888DLH/@@download/ENCFF888DLH.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF608NQW bigWig signal p-value ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF218YRX, ENCFF820JHF 1409041414 ENCODE Processing Pipeline 934abd176f0439d8527847e447e5c7fb https://www.encodeproject.org/files/ENCFF608NQW/@@download/ENCFF608NQW.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF815NJQ bigWig fold change over control ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF218YRX, ENCFF820JHF 1295118150 ENCODE Processing Pipeline 5969006bd9b1d8d779012a427619b9f0 https://www.encodeproject.org/files/ENCFF815NJQ/@@download/ENCFF815NJQ.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF651APG bed narrowPeak peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF218YRX, ENCFF820JHF 5580768 ENCODE Processing Pipeline 6d54dd5e3900b0a0e42646b816b50400 https://www.encodeproject.org/files/ENCFF651APG/@@download/ENCFF651APG.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF826KSN bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF535DHF 216086 ENCODE Processing Pipeline 28fb3e776ea2cd375bcb5ffc16798791 https://www.encodeproject.org/files/ENCFF826KSN/@@download/ENCFF826KSN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF535DHF bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF651APG 102982 ENCODE Processing Pipeline dcbbe820bbbe6b84ede84a3363018afb https://www.encodeproject.org/files/ENCFF535DHF/@@download/ENCFF535DHF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF706QNI bigBed narrowPeak peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF651APG 11702355 ENCODE Processing Pipeline 8e9b06a425514cad7c0102ef6b34f8cf https://www.encodeproject.org/files/ENCFF706QNI/@@download/ENCFF706QNI.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000XLO bam alignments ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XMQ 331438991 Michael Snyder, Stanford 9b0cfca582fa7fb97b0129fcf1c3060c https://www.encodeproject.org/files/ENCFF000XLO/@@download/ENCFF000XLO.bam hg19 released low read length biological replicates with identical biosample ENCFF000XLP bam alignments ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XMR 278234725 Michael Snyder, Stanford 43e9b4f588428d6de47987253af0fb1c https://www.encodeproject.org/files/ENCFF000XLP/@@download/ENCFF000XLP.bam hg19 released low read length biological replicates with identical biosample ENCFF000XLQ bigBed narrowPeak peaks ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJJ 913844 Michael Snyder, Stanford f78692083e8f3eb5a04790802ef7e115 https://www.encodeproject.org/files/ENCFF000XLQ/@@download/ENCFF000XLQ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XLV bigWig signal ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 396389555 Michael Snyder, Stanford 409fe630e94114b1b1fdd548b3a4c1db https://www.encodeproject.org/files/ENCFF000XLV/@@download/ENCFF000XLV.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000XMQ fastq reads ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1028780593 Michael Snyder, Stanford 202e7bda281ca0c3d97f37831d69c0bc https://www.encodeproject.org/files/ENCFF000XMQ/@@download/ENCFF000XMQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XMR fastq reads ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1050594149 Michael Snyder, Stanford a18834e0edc21d764814e84d504eebc9 https://www.encodeproject.org/files/ENCFF000XMR/@@download/ENCFF000XMR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VJJ bed narrowPeak peaks ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 385351 Michael Snyder, Stanford 3fbd232fe880dc49815fbae63676a766 https://www.encodeproject.org/files/ENCFF001VJJ/@@download/ENCFF001VJJ.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF002CTH bed narrowPeak optimal idr thresholded peaks ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 348525 ENCODE Consortium Analysis Working Group 9d04aa699bf6a49606986f1798d9d4f8 https://www.encodeproject.org/files/ENCFF002CTH/@@download/ENCFF002CTH.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF541MXN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTH 810290 ENCODE Consortium 9b1b59c9cb0c27d703a1bb2e04222358 https://www.encodeproject.org/files/ENCFF541MXN/@@download/ENCFF541MXN.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XRD bam alignments ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XRO 353271037 Michael Snyder, Stanford 0c42198dc14e15f8b11bd248a0142b4c https://www.encodeproject.org/files/ENCFF000XRD/@@download/ENCFF000XRD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRE bam alignments ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XRN 166725656 Michael Snyder, Stanford 2198c82a88b53aeaafdf7d77321ef330 https://www.encodeproject.org/files/ENCFF000XRE/@@download/ENCFF000XRE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRF bigBed narrowPeak peaks ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKD 96744 Michael Snyder, Stanford 413314ac0d44172d5ed0f08c266b2f56 https://www.encodeproject.org/files/ENCFF000XRF/@@download/ENCFF000XRF.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRG bigWig signal ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 334769238 Michael Snyder, Stanford 695210b33dd1b5de9dca25d7808f351a https://www.encodeproject.org/files/ENCFF000XRG/@@download/ENCFF000XRG.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XRN fastq reads ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 124921974 Michael Snyder, Stanford d4776c05971f804df1905f7b5463a592 https://www.encodeproject.org/files/ENCFF000XRN/@@download/ENCFF000XRN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF000XRO fastq reads ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 266726157 Michael Snyder, Stanford f890ddb7548dcdc2ec6fda814b455934 https://www.encodeproject.org/files/ENCFF000XRO/@@download/ENCFF000XRO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF001VKD bed narrowPeak peaks ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 7798 Michael Snyder, Stanford d705d30ea1cd900e00e9bc99e7abdcb1 https://www.encodeproject.org/files/ENCFF001VKD/@@download/ENCFF001VKD.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CUA bed narrowPeak optimal idr thresholded peaks ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 26113 ENCODE Consortium Analysis Working Group 07cbe352ae64551deba3c8aaf9c673ce https://www.encodeproject.org/files/ENCFF002CUA/@@download/ENCFF002CUA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF857CKU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUA 109502 ENCODE Consortium bd49ec3923c81cbf3dc507209c527ca0 https://www.encodeproject.org/files/ENCFF857CKU/@@download/ENCFF857CKU.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF117VHU fastq reads ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 2 ENCFF450ZWT 3202545122 Richard Myers, HAIB 015a4efc4db10b0bbd26a841f30a1732 SRA:SRR6212605 https://www.encodeproject.org/files/ENCFF117VHU/@@download/ENCFF117VHU.fastq.gz Illumina HiSeq 2000 /files/ENCFF869CER/ released antibody characterized with exemption missing control alignments ENCFF450ZWT fastq reads ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 1 76 paired-ended 1 ENCFF117VHU 3126449765 Richard Myers, HAIB b2065b40aedea8c3dd5447a99e04a781 SRA:SRR6212605 https://www.encodeproject.org/files/ENCFF450ZWT/@@download/ENCFF450ZWT.fastq.gz Illumina HiSeq 2000 /files/ENCFF354FAR/ released antibody characterized with exemption missing control alignments ENCFF455FPI bam unfiltered alignments ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF117VHU, ENCFF450ZWT, ENCFF807MUK 7209921902 ENCODE Processing Pipeline 1fa06b0c6cf6ecd6910c7c0d9652c29b https://www.encodeproject.org/files/ENCFF455FPI/@@download/ENCFF455FPI.bam hg19 released antibody characterized with exemption missing control alignments ENCFF944EAM bam alignments ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF117VHU, ENCFF450ZWT, ENCFF807MUK 5123136393 ENCODE Processing Pipeline ec3a928ba0d789571bbefe08d113c1ae https://www.encodeproject.org/files/ENCFF944EAM/@@download/ENCFF944EAM.bam hg19 released antibody characterized with exemption missing control alignments ENCFF774SQL bam unfiltered alignments ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF117VHU, ENCFF450ZWT, ENCFF643CGH 7236813543 ENCODE Processing Pipeline fba19491e6e1557fb9d88a4ef3cea6fb https://www.encodeproject.org/files/ENCFF774SQL/@@download/ENCFF774SQL.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF527JNQ bam alignments ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF117VHU, ENCFF450ZWT, ENCFF643CGH 5127145120 ENCODE Processing Pipeline 8d097cf69c6bb61ec4b9feb38b760dac https://www.encodeproject.org/files/ENCFF527JNQ/@@download/ENCFF527JNQ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF954BJF bigWig signal p-value ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF527JNQ 1040704298 ENCODE Processing Pipeline 853cbb55bdba586fcb151ac92fbaa9ef https://www.encodeproject.org/files/ENCFF954BJF/@@download/ENCFF954BJF.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF270XQD bigBed narrowPeak peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF322MFZ 11673649 ENCODE Processing Pipeline 41857834fabc60ceb40e824e9f3bef0e https://www.encodeproject.org/files/ENCFF270XQD/@@download/ENCFF270XQD.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF732IFW bigWig fold change over control ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF527JNQ 1428652477 ENCODE Processing Pipeline 042181687313cfb3c2d73a5a5b20fd1a https://www.encodeproject.org/files/ENCFF732IFW/@@download/ENCFF732IFW.bigWig GRCh38 released antibody characterized with exemption missing control alignments ENCFF833NHM bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF322MFZ, ENCFF419RSJ 521945 ENCODE Processing Pipeline c50b4ab588444d6637ad1abf78a61cda https://www.encodeproject.org/files/ENCFF833NHM/@@download/ENCFF833NHM.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF322MFZ bed narrowPeak peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF527JNQ 6340074 ENCODE Processing Pipeline 47d210664219a958449c6eb7ad8968cd https://www.encodeproject.org/files/ENCFF322MFZ/@@download/ENCFF322MFZ.bed.gz GRCh38 released antibody characterized with exemption missing control alignments ENCFF875AYT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF833NHM 1049877 ENCODE Processing Pipeline b74a878dc42b37939b8a5fae4a44d854 https://www.encodeproject.org/files/ENCFF875AYT/@@download/ENCFF875AYT.bigBed GRCh38 released antibody characterized with exemption missing control alignments ENCFF654LHA bigWig signal p-value ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF944EAM 1042873173 ENCODE Processing Pipeline c1352e7ca4f57b4867084cf0e3ccad8d https://www.encodeproject.org/files/ENCFF654LHA/@@download/ENCFF654LHA.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF961TYR bigBed narrowPeak peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF839MBM 11662114 ENCODE Processing Pipeline 306ba5a026bef040c56aaee9bb7f504d https://www.encodeproject.org/files/ENCFF961TYR/@@download/ENCFF961TYR.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF145NMU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF001TDO, ENCFF839MBM 525798 ENCODE Processing Pipeline 845e81d2a936657d8b097db601b16978 https://www.encodeproject.org/files/ENCFF145NMU/@@download/ENCFF145NMU.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF447ICW bigWig fold change over control ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF944EAM 1427662056 ENCODE Processing Pipeline 8f1c224316b5c7ec81efb59de9dab95c https://www.encodeproject.org/files/ENCFF447ICW/@@download/ENCFF447ICW.bigWig hg19 released antibody characterized with exemption missing control alignments ENCFF839MBM bed narrowPeak peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF944EAM 6340677 ENCODE Processing Pipeline 7d50f66aa8886055b0e47d6c02d2352c https://www.encodeproject.org/files/ENCFF839MBM/@@download/ENCFF839MBM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF765JAG bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF145NMU 1051832 ENCODE Processing Pipeline e9fe0fb514118eb6e9de6789a84a39df https://www.encodeproject.org/files/ENCFF765JAG/@@download/ENCFF765JAG.bigBed hg19 released antibody characterized with exemption missing control alignments ENCFF000YGC bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YGJ 593240881 Michael Snyder, Stanford 023fa258daff5c2051b033cae073e587 https://www.encodeproject.org/files/ENCFF000YGC/@@download/ENCFF000YGC.bam hg19 archived low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YGD bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VMB 3449246 Michael Snyder, Stanford f9f33b032948d3de7b149123e7eb5f52 https://www.encodeproject.org/files/ENCFF000YGD/@@download/ENCFF000YGD.bigBed hg19 archived low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YGE bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YGQ 631708925 Michael Snyder, Stanford 8971f3de81f7c9c87f9a6b3e3a5bb185 https://www.encodeproject.org/files/ENCFF000YGE/@@download/ENCFF000YGE.bam hg19 archived low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YGG bigWig signal ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 452385333 Michael Snyder, Stanford b10d8e4445195cacc79c38b6a4c1dc40 https://www.encodeproject.org/files/ENCFF000YGG/@@download/ENCFF000YGG.bigWig hg19 archived low read length, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF000YGJ fastq reads ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1471208804 Michael Snyder, Stanford 1ee58646fe620b30869c03f55a32f70c https://www.encodeproject.org/files/ENCFF000YGJ/@@download/ENCFF000YGJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000YGQ fastq reads ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1271059091 Michael Snyder, Stanford ea212715930ce9fae9641e0ba1123be7 https://www.encodeproject.org/files/ENCFF000YGQ/@@download/ENCFF000YGQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YRB/ released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001VMB bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1400659 Michael Snyder, Stanford 46c2e41f59e8c2e9cdceddfe7dd8ab4c https://www.encodeproject.org/files/ENCFF001VMB/@@download/ENCFF001VMB.bed.gz hg19 archived low read length, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF002CVQ bed narrowPeak optimal idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 558105 ENCODE Consortium Analysis Working Group bc87d5c569c83dc64331f326019fb4d7 https://www.encodeproject.org/files/ENCFF002CVQ/@@download/ENCFF002CVQ.bed.gz hg19 archived low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF072JBV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVQ 1248612 ENCODE Consortium 3b4d94ae60b34a2ed3d97eebbc25dc71 https://www.encodeproject.org/files/ENCFF072JBV/@@download/ENCFF072JBV.bigBed hg19 archived low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF062TRG bam unfiltered alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YGQ, ENCFF643CGH 1540541768 ENCODE Processing Pipeline d3f5644ce3e3cb3f3da21a71a527eb63 https://www.encodeproject.org/files/ENCFF062TRG/@@download/ENCFF062TRG.bam GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF213JOK bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YGQ, ENCFF643CGH 1025876348 ENCODE Processing Pipeline 8f24fbd966f9b45f47c488eab2d15ab5 https://www.encodeproject.org/files/ENCFF213JOK/@@download/ENCFF213JOK.bam GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF950BGX bam unfiltered alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YGJ, ENCFF643CGH 1759484240 ENCODE Processing Pipeline 4148bd702dc740c21ba320f2108bc71c https://www.encodeproject.org/files/ENCFF950BGX/@@download/ENCFF950BGX.bam GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF988VSQ bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YGJ, ENCFF643CGH 1135718560 ENCODE Processing Pipeline 4e05459f011a7889d4b83bef71e5364e https://www.encodeproject.org/files/ENCFF988VSQ/@@download/ENCFF988VSQ.bam GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF726VVW bam unfiltered alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YGJ, ENCFF807MUK 1752060020 ENCODE Processing Pipeline 57066a1278aadf28a01d981aa492085a https://www.encodeproject.org/files/ENCFF726VVW/@@download/ENCFF726VVW.bam hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF106IJG bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YGQ, ENCFF807MUK 1026537936 ENCODE Processing Pipeline e7c441f88dc275be4ddb0e628749f68b https://www.encodeproject.org/files/ENCFF106IJG/@@download/ENCFF106IJG.bam hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF823NIQ bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YGJ, ENCFF807MUK 1136451441 ENCODE Processing Pipeline 7f36ed455e6e004da7c1233f777568b0 https://www.encodeproject.org/files/ENCFF823NIQ/@@download/ENCFF823NIQ.bam hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF998ZEU bam unfiltered alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YGQ, ENCFF807MUK 1533962855 ENCODE Processing Pipeline ef18eab0f13e547bc089046941ff669c https://www.encodeproject.org/files/ENCFF998ZEU/@@download/ENCFF998ZEU.bam hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF281SYI bigWig signal p-value ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF823NIQ 517143909 ENCODE Processing Pipeline c2f195c7268dce2a3852a62a0a7acfcc https://www.encodeproject.org/files/ENCFF281SYI/@@download/ENCFF281SYI.bigWig hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF423JHI bigWig signal p-value ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106IJG, ENCFF710NTS 520051215 ENCODE Processing Pipeline 4e85df6627de3343579288be050f4bc8 https://www.encodeproject.org/files/ENCFF423JHI/@@download/ENCFF423JHI.bigWig hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF821DQQ bigWig signal p-value ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF106IJG, ENCFF710NTS, ENCFF823NIQ 525595467 ENCODE Processing Pipeline b1884cf7b4b81d9cd845f1e71716d375 https://www.encodeproject.org/files/ENCFF821DQQ/@@download/ENCFF821DQQ.bigWig hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF434PYK bigWig fold change over control ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF823NIQ 479769197 ENCODE Processing Pipeline 40f43683fdbd5d8dd038de59496d65f7 https://www.encodeproject.org/files/ENCFF434PYK/@@download/ENCFF434PYK.bigWig hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF741NDQ bigWig fold change over control ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106IJG, ENCFF710NTS 491310388 ENCODE Processing Pipeline f1f1502c50e02f7909a9385d466ea20d https://www.encodeproject.org/files/ENCFF741NDQ/@@download/ENCFF741NDQ.bigWig hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF368XWG bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106IJG, ENCFF710NTS 5431250 ENCODE Processing Pipeline 03e3bc481010a522f0be761ea0c49ec1 https://www.encodeproject.org/files/ENCFF368XWG/@@download/ENCFF368XWG.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF815ARN bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF432TSX 972305 ENCODE Processing Pipeline 574bbe676c6fe63ac78f846b94967af1 https://www.encodeproject.org/files/ENCFF815ARN/@@download/ENCFF815ARN.bigBed hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF179NDS bed narrowPeak optimal idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF077KRK, ENCFF159GKF, ENCFF368XWG 491465 ENCODE Processing Pipeline 8a7b06a474913c6365c15ef047a6db83 https://www.encodeproject.org/files/ENCFF179NDS/@@download/ENCFF179NDS.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF765OJY bigWig fold change over control ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF106IJG, ENCFF710NTS, ENCFF823NIQ 807870591 ENCODE Processing Pipeline ac607db429b6f42758ec74f82a9a478e https://www.encodeproject.org/files/ENCFF765OJY/@@download/ENCFF765OJY.bigWig hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF354MLD bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF077KRK 13171389 ENCODE Processing Pipeline 715a6ad7bfd1a38e00c62ebe6f3e90bb https://www.encodeproject.org/files/ENCFF354MLD/@@download/ENCFF354MLD.bigBed hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF077KRK bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF823NIQ 5501529 ENCODE Processing Pipeline 1e02c94c7e82b16b361f512039fdb43a https://www.encodeproject.org/files/ENCFF077KRK/@@download/ENCFF077KRK.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF222RRB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF179NDS 1017169 ENCODE Processing Pipeline afe31283f6131e81e7dd58c76ee6773d https://www.encodeproject.org/files/ENCFF222RRB/@@download/ENCFF222RRB.bigBed hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF432TSX bed narrowPeak conservative idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF077KRK, ENCFF159GKF, ENCFF368XWG 463671 ENCODE Processing Pipeline 3b2345fad1e34528d67696019967b345 https://www.encodeproject.org/files/ENCFF432TSX/@@download/ENCFF432TSX.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF159GKF bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF106IJG, ENCFF710NTS, ENCFF823NIQ 6320048 ENCODE Processing Pipeline cd322e707233bb8dcec5b05765ff167b https://www.encodeproject.org/files/ENCFF159GKF/@@download/ENCFF159GKF.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF348TMB bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF159GKF 13442962 ENCODE Processing Pipeline 04f8ff7644e64f864b8b7d43b96db748 https://www.encodeproject.org/files/ENCFF348TMB/@@download/ENCFF348TMB.bigBed hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF903QXZ bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF368XWG 11202129 ENCODE Processing Pipeline 0debf0eda8e7fb6886e72ef15aa7a08f https://www.encodeproject.org/files/ENCFF903QXZ/@@download/ENCFF903QXZ.bigBed hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF843ITZ bigWig signal p-value ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF988VSQ 516599806 ENCODE Processing Pipeline 5877d3b7b7fcb62c3e8a039def4d455f https://www.encodeproject.org/files/ENCFF843ITZ/@@download/ENCFF843ITZ.bigWig GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF212NIJ bigWig fold change over control ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF988VSQ 475540567 ENCODE Processing Pipeline bda74fd0ca1ff3292552a1d3ea78a6ee https://www.encodeproject.org/files/ENCFF212NIJ/@@download/ENCFF212NIJ.bigWig GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF585OPQ bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF213JOK 5407285 ENCODE Processing Pipeline c890a3dc305a9edbe1ac47477a532968 https://www.encodeproject.org/files/ENCFF585OPQ/@@download/ENCFF585OPQ.bed.gz GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF356UCG bigWig signal p-value ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF213JOK 519528603 ENCODE Processing Pipeline 7ea14009a8ce621d1112834d8fdd16dc https://www.encodeproject.org/files/ENCFF356UCG/@@download/ENCFF356UCG.bigWig GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF505LZQ bigWig fold change over control ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF213JOK, ENCFF988VSQ 808225766 ENCODE Processing Pipeline 3c35e3b0964405ded8753896fe353718 https://www.encodeproject.org/files/ENCFF505LZQ/@@download/ENCFF505LZQ.bigWig GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF779FXA bigBed narrowPeak conservative idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF819MHF 759502 ENCODE Processing Pipeline 9b3af870453574b9d7c03c7974718682 https://www.encodeproject.org/files/ENCFF779FXA/@@download/ENCFF779FXA.bigBed GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF534PVK bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF213JOK, ENCFF988VSQ 6244298 ENCODE Processing Pipeline 52c8c7653f45314b85b70264e9cf1009 https://www.encodeproject.org/files/ENCFF534PVK/@@download/ENCFF534PVK.bed.gz GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF464XIX bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF585OPQ 11187069 ENCODE Processing Pipeline fe61ef7d66f29c2f72ad8e418680de35 https://www.encodeproject.org/files/ENCFF464XIX/@@download/ENCFF464XIX.bigBed GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF316PXK bigWig signal p-value ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF023NGN, ENCFF213JOK, ENCFF988VSQ 525051543 ENCODE Processing Pipeline dcbe4aeb172a6b50145ceb073975dbb9 https://www.encodeproject.org/files/ENCFF316PXK/@@download/ENCFF316PXK.bigWig GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF868UQS bigWig fold change over control ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF023NGN, ENCFF213JOK 487570416 ENCODE Processing Pipeline b82e0357e1d3e28c27201907ec41b901 https://www.encodeproject.org/files/ENCFF868UQS/@@download/ENCFF868UQS.bigWig GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF584IDR bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF511YJO 13174271 ENCODE Processing Pipeline 91fabba4fb2c71e852133ce5aa719ac0 https://www.encodeproject.org/files/ENCFF584IDR/@@download/ENCFF584IDR.bigBed GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF511YJO bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF023NGN, ENCFF988VSQ 5500702 ENCODE Processing Pipeline 195a2e7c630e89781c657037aad79ef9 https://www.encodeproject.org/files/ENCFF511YJO/@@download/ENCFF511YJO.bed.gz GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF819MHF bed narrowPeak conservative idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF511YJO, ENCFF534PVK, ENCFF585OPQ 436302 ENCODE Processing Pipeline 599c61554f65d243f3bc3523570e2707 https://www.encodeproject.org/files/ENCFF819MHF/@@download/ENCFF819MHF.bed.gz GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF096VXJ bigBed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF534PVK 13363443 ENCODE Processing Pipeline 8fd1e732ae1c44fd135a5e282b62ab5c https://www.encodeproject.org/files/ENCFF096VXJ/@@download/ENCFF096VXJ.bigBed GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF918GAZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF477JTV 798984 ENCODE Processing Pipeline 00bb075bdd958ec8bb5f8889329d9dc1 https://www.encodeproject.org/files/ENCFF918GAZ/@@download/ENCFF918GAZ.bigBed GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF477JTV bed narrowPeak optimal idr thresholded peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF511YJO, ENCFF534PVK, ENCFF585OPQ 466109 ENCODE Processing Pipeline eee6b076fbdd11c420adab6839341636 https://www.encodeproject.org/files/ENCFF477JTV/@@download/ENCFF477JTV.bed.gz GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000XHQ bam alignments ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XHT 465155715 Michael Snyder, Stanford 2c2b7fcd8789472ae1afc29b6824b3e9 https://www.encodeproject.org/files/ENCFF000XHQ/@@download/ENCFF000XHQ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XHR bam alignments ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XHV 542596204 Michael Snyder, Stanford 13af305861f4baab44eeaf511af5320e https://www.encodeproject.org/files/ENCFF000XHR/@@download/ENCFF000XHR.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XHS bigBed narrowPeak peaks ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VIU 1952106 Michael Snyder, Stanford 09b3539ce87951761a21c0a1c0183369 https://www.encodeproject.org/files/ENCFF000XHS/@@download/ENCFF000XHS.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XHT fastq reads ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 899346426 Michael Snyder, Stanford f0295bc11d035952daa7ac899c5b9030 https://www.encodeproject.org/files/ENCFF000XHT/@@download/ENCFF000XHT.fastq.gz Illumina Genome Analyzer II /files/ENCFF000XKW/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XHV fastq reads ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1061474361 Michael Snyder, Stanford 50f6d4527ba4172f53d7571277c956dd https://www.encodeproject.org/files/ENCFF000XHV/@@download/ENCFF000XHV.fastq.gz Illumina Genome Analyzer II /files/ENCFF000XKW/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000XHX bigWig signal ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 391126508 Michael Snyder, Stanford 186b58d3630d5278ef653c0bd9c17a62 https://www.encodeproject.org/files/ENCFF000XHX/@@download/ENCFF000XHX.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001VIU bed narrowPeak peaks ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 768079 Michael Snyder, Stanford 2d1b4609063f82b7ffa67326230cd7ed https://www.encodeproject.org/files/ENCFF001VIU/@@download/ENCFF001VIU.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CSS bed narrowPeak optimal idr thresholded peaks ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 347669 ENCODE Consortium Analysis Working Group 90db788031b3e93cd69f1dcdac0ece8a https://www.encodeproject.org/files/ENCFF002CSS/@@download/ENCFF002CSS.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF119YOQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CSS 888343 ENCODE Consortium 0374dcfcc51dba67d4d6b3378949b4e0 https://www.encodeproject.org/files/ENCFF119YOQ/@@download/ENCFF119YOQ.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001GVI bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GVU 333783720 John Stamatoyannopoulos, UW 49542721c598d72bc64a4ef7a333eec4 https://www.encodeproject.org/files/ENCFF001GVI/@@download/ENCFF001GVI.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVJ bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GWB 598898832 John Stamatoyannopoulos, UW 4ba84dd8132f471526cd5e81cbb76752 https://www.encodeproject.org/files/ENCFF001GVJ/@@download/ENCFF001GVJ.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVK bigBed broadPeak hotspots ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XLL 2262306 John Stamatoyannopoulos, UW f518318612611da9f6c79b5b2a1a8fa6 https://www.encodeproject.org/files/ENCFF001GVK/@@download/ENCFF001GVK.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVL bigBed broadPeak hotspots ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XLN 5053761 John Stamatoyannopoulos, UW 9d5672bcdce8f4608b8aad3f75c4a024 https://www.encodeproject.org/files/ENCFF001GVL/@@download/ENCFF001GVL.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVM bigBed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001XLM 885257 John Stamatoyannopoulos, UW 1266715f8bf5d55a807c763e4a1194d6 https://www.encodeproject.org/files/ENCFF001GVM/@@download/ENCFF001GVM.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVN bigBed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001XLO 1590564 John Stamatoyannopoulos, UW 1492713f04e284f7a457b3d827afbbc0 https://www.encodeproject.org/files/ENCFF001GVN/@@download/ENCFF001GVN.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVQ bigWig raw signal ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GVI 26375457 John Stamatoyannopoulos, UW 241230d779c8dce844563bc8faadedbb https://www.encodeproject.org/files/ENCFF001GVQ/@@download/ENCFF001GVQ.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVR bigWig raw signal ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GVJ 99871942 John Stamatoyannopoulos, UW 2e383312d907a17672c842506aeb6b82 https://www.encodeproject.org/files/ENCFF001GVR/@@download/ENCFF001GVR.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GVU fastq reads ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 1 36 single-ended 484934262 John Stamatoyannopoulos, UW 000258d70400dcf5a68f564e1103700c https://www.encodeproject.org/files/ENCFF001GVU/@@download/ENCFF001GVU.fastq.gz Illumina Genome Analyzer /files/ENCFF001GWE/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001GWB fastq reads ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 1 36 single-ended 736950929 John Stamatoyannopoulos, UW ee063e64b13d38d0bb3d8df46032b879 https://www.encodeproject.org/files/ENCFF001GWB/@@download/ENCFF001GWB.fastq.gz Illumina Genome Analyzer /files/ENCFF001GWE/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001XLL bed broadPeak hotspots ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GVI 1459097 John Stamatoyannopoulos, UW 856bd2f28c1a631a82ac1cad5c455861 https://www.encodeproject.org/files/ENCFF001XLL/@@download/ENCFF001XLL.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001XLM bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GVI 595003 John Stamatoyannopoulos, UW ec0e5a0e816cd54f88a504691ca7db39 https://www.encodeproject.org/files/ENCFF001XLM/@@download/ENCFF001XLM.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001XLN bed broadPeak hotspots ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GVJ 2917906 John Stamatoyannopoulos, UW 40792772bef798cc6fae97418c4dd95a https://www.encodeproject.org/files/ENCFF001XLN/@@download/ENCFF001XLN.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF001XLO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GVJ 946215 John Stamatoyannopoulos, UW b9276c97fe64d2aeb9b193e1852d731d https://www.encodeproject.org/files/ENCFF001XLO/@@download/ENCFF001XLO.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF002DBU bed narrowPeak optimal idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001GVI, ENCFF001GVJ 967359 ENCODE Consortium Analysis Working Group fa369882e7ed1a19021d3f1729c4c598 https://www.encodeproject.org/files/ENCFF002DBU/@@download/ENCFF002DBU.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF126GRC bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF002DBU 1999528 ENCODE Consortium 6f0e77829058f1ceb6e2ee7c42be1c95 https://www.encodeproject.org/files/ENCFF126GRC/@@download/ENCFF126GRC.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF766CZQ bam unfiltered alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GVU, ENCFF643CGH 446892284 ENCODE Processing Pipeline fad70b8727a05aa81dc711aa43e1edd5 https://www.encodeproject.org/files/ENCFF766CZQ/@@download/ENCFF766CZQ.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF905NBP bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GVU, ENCFF643CGH 91884798 ENCODE Processing Pipeline c1f26aa3587b5bf00c71680040fe99c4 https://www.encodeproject.org/files/ENCFF905NBP/@@download/ENCFF905NBP.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF677RAA bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GWB, ENCFF643CGH 446974378 ENCODE Processing Pipeline 3da0b85c65081a5e7fa1c936355e6eb1 https://www.encodeproject.org/files/ENCFF677RAA/@@download/ENCFF677RAA.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF794CLK bam unfiltered alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GWB, ENCFF643CGH 802367149 ENCODE Processing Pipeline 544ab6421a999023d7d2d41a0befb084 https://www.encodeproject.org/files/ENCFF794CLK/@@download/ENCFF794CLK.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF076ZNH bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GVU, ENCFF807MUK 91948480 ENCODE Processing Pipeline e11de3efbf789cfe9774c4baf7286a6f https://www.encodeproject.org/files/ENCFF076ZNH/@@download/ENCFF076ZNH.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF613ELA bam unfiltered alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GVU, ENCFF807MUK 444986467 ENCODE Processing Pipeline ac1ac264451073a613eab9115f6c2ac8 https://www.encodeproject.org/files/ENCFF613ELA/@@download/ENCFF613ELA.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF453ODE bam unfiltered alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GWB, ENCFF807MUK 800029900 ENCODE Processing Pipeline 72f60547405f712c7a8ed576094ef234 https://www.encodeproject.org/files/ENCFF453ODE/@@download/ENCFF453ODE.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF874DYB bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GWB, ENCFF807MUK 447112016 ENCODE Processing Pipeline d6c79871bb0b5a48f49a03bf4239a6ba https://www.encodeproject.org/files/ENCFF874DYB/@@download/ENCFF874DYB.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF023NXW bigWig signal p-value ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF076ZNH, ENCFF251TYG 241848583 ENCODE Processing Pipeline 2fa259da1ee8d99cbd7e82e89e71b279 https://www.encodeproject.org/files/ENCFF023NXW/@@download/ENCFF023NXW.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF413SFF bigWig fold change over control ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF076ZNH, ENCFF251TYG, ENCFF874DYB 219907430 ENCODE Processing Pipeline 1de430f0e4f8bff92e86bf2bb9cb60fa https://www.encodeproject.org/files/ENCFF413SFF/@@download/ENCFF413SFF.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF874BHN bigBed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF115DAO 10252105 ENCODE Processing Pipeline 973f2176c4600960eecd3fa63d95bd0f https://www.encodeproject.org/files/ENCFF874BHN/@@download/ENCFF874BHN.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF759BEL bed narrowPeak conservative idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF096GLZ, ENCFF115DAO, ENCFF605UGV 551349 ENCODE Processing Pipeline 3017dad6e612a46da4be6b442a84dcbf https://www.encodeproject.org/files/ENCFF759BEL/@@download/ENCFF759BEL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF739OUI bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF759BEL 1048459 ENCODE Processing Pipeline faf5affe952eb99fad3d0206344356f4 https://www.encodeproject.org/files/ENCFF739OUI/@@download/ENCFF739OUI.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF528GDW bigWig signal p-value ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF251TYG, ENCFF874DYB 308893673 ENCODE Processing Pipeline 29843afe120f2bfcae2a9da171de34d1 https://www.encodeproject.org/files/ENCFF528GDW/@@download/ENCFF528GDW.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF467IWX bigWig fold change over control ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF251TYG, ENCFF874DYB 190099203 ENCODE Processing Pipeline 805cdc1385c6a9d48a8a4f88f29ba08a https://www.encodeproject.org/files/ENCFF467IWX/@@download/ENCFF467IWX.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF096GLZ bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF076ZNH, ENCFF251TYG 1064010 ENCODE Processing Pipeline baeab40cacbef5a56d321a1785ca47c7 https://www.encodeproject.org/files/ENCFF096GLZ/@@download/ENCFF096GLZ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF757YSV bigBed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF096GLZ 2310705 ENCODE Processing Pipeline cb0263e6c495de788d421b1fd1488069 https://www.encodeproject.org/files/ENCFF757YSV/@@download/ENCFF757YSV.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF398WUY bigWig fold change over control ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF076ZNH, ENCFF251TYG 45494070 ENCODE Processing Pipeline 2e49ca581e2f982ef2ba8840fe1b49cf https://www.encodeproject.org/files/ENCFF398WUY/@@download/ENCFF398WUY.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF944VAE bed narrowPeak optimal idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF001TDO, ENCFF096GLZ, ENCFF115DAO, ENCFF605UGV 742448 ENCODE Processing Pipeline 27944057da59b906cd704d994fbe20b7 https://www.encodeproject.org/files/ENCFF944VAE/@@download/ENCFF944VAE.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF669PXL bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF944VAE 1292852 ENCODE Processing Pipeline 0ecbefda8901f48bbf60c62a66597211 https://www.encodeproject.org/files/ENCFF669PXL/@@download/ENCFF669PXL.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF359IDG bigWig signal p-value ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF076ZNH, ENCFF251TYG, ENCFF874DYB 374660114 ENCODE Processing Pipeline 652f2193d967d476d890b9f9244890c7 https://www.encodeproject.org/files/ENCFF359IDG/@@download/ENCFF359IDG.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF115DAO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF251TYG, ENCFF874DYB 4304795 ENCODE Processing Pipeline c8db2b2aab2e1aed3552f27a80ea6a95 https://www.encodeproject.org/files/ENCFF115DAO/@@download/ENCFF115DAO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF605UGV bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF076ZNH, ENCFF251TYG, ENCFF874DYB 4421244 ENCODE Processing Pipeline c7c12b411875c717c44c8a6a3219f2c9 https://www.encodeproject.org/files/ENCFF605UGV/@@download/ENCFF605UGV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF143ABC bigBed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1, 2 ENCFF605UGV 10469722 ENCODE Processing Pipeline 740c12bdb4bde42eb64a15abaa69e4cc https://www.encodeproject.org/files/ENCFF143ABC/@@download/ENCFF143ABC.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF000CBS bigBed broadPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE ENCFF001TAF 6110373 Bradley Bernstein, Broad bcd3d43248fc868d83dc7c9c5c603c42 https://www.encodeproject.org/files/ENCFF000CBS/@@download/ENCFF000CBS.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000CBT bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 1 794667338 Bradley Bernstein, Broad 0685ed43c42c9def181f236ca3e53cde https://www.encodeproject.org/files/ENCFF000CBT/@@download/ENCFF000CBT.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000CBU bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 1 1061671464 Bradley Bernstein, Broad 1e4c7440b4732fe7508e0e160ab14e9a https://www.encodeproject.org/files/ENCFF000CBU/@@download/ENCFF000CBU.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000CBV bigWig signal ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 344567925 Bradley Bernstein, Broad 23110f463ef0664eadc9d2ad9ad4753d https://www.encodeproject.org/files/ENCFF000CBV/@@download/ENCFF000CBV.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF001TAF bed broadPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 3537308 Bradley Bernstein, Broad 3a946e3353e1e785735deeff1cf1636f https://www.encodeproject.org/files/ENCFF001TAF/@@download/ENCFF001TAF.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF002CEV bed narrowPeak optimal idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 217610 ENCODE Consortium Analysis Working Group a5df7c305af05ffe464e505e160dd1d5 https://www.encodeproject.org/files/ENCFF002CEV/@@download/ENCFF002CEV.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF242YXH bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEV 627288 ENCODE Consortium e796eb0868bce4c5a15d49a8ca3fa7c4 https://www.encodeproject.org/files/ENCFF242YXH/@@download/ENCFF242YXH.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF531OCK fastq reads ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1306927480 Bradley Bernstein, Broad cff3c8f72357616045b150d6c73fca9e https://www.encodeproject.org/files/ENCFF531OCK/@@download/ENCFF531OCK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF873QQB fastq reads ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1424633906 Bradley Bernstein, Broad 4ff6fc59a57ab1f48f06f6a518871667 https://www.encodeproject.org/files/ENCFF873QQB/@@download/ENCFF873QQB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF693YKU fastq reads ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 1 ENCFF124BQG 1186123827 Bradley Bernstein, Broad 29c027fa05f37158577e8fcf39f5c644 https://www.encodeproject.org/files/ENCFF693YKU/@@download/ENCFF693YKU.fastq.gz Illumina HiSeq 2500 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, missing controlled_by, poor library complexity, severe bottlenecking ENCFF124BQG fastq reads ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 3 1 25 paired-ended 2 ENCFF693YKU 1197224974 Bradley Bernstein, Broad 2abc637535c07994072b6a4fd48eb389 https://www.encodeproject.org/files/ENCFF124BQG/@@download/ENCFF124BQG.fastq.gz Illumina HiSeq 2500 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, missing controlled_by, severe bottlenecking ENCFF548SYQ bam unfiltered alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF531OCK, ENCFF807MUK 1560899070 ENCODE Processing Pipeline 23e036068787485dc7ed3bcda180a002 https://www.encodeproject.org/files/ENCFF548SYQ/@@download/ENCFF548SYQ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF106SWN bam unfiltered alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF531OCK, ENCFF643CGH 1567192432 ENCODE Processing Pipeline d586fd14472f54467659ca00265db657 https://www.encodeproject.org/files/ENCFF106SWN/@@download/ENCFF106SWN.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF187CGT bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF531OCK, ENCFF807MUK 332206912 ENCODE Processing Pipeline 447a8e6638f4db0928974ab2b11e67f0 https://www.encodeproject.org/files/ENCFF187CGT/@@download/ENCFF187CGT.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF416LJL bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF873QQB 506927863 ENCODE Processing Pipeline 89b5bd3c8c099013ce72359c181dc488 https://www.encodeproject.org/files/ENCFF416LJL/@@download/ENCFF416LJL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF243TCE bam unfiltered alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF873QQB 1758122369 ENCODE Processing Pipeline 5d310cf468b21cc2ae0649b2d54afacd https://www.encodeproject.org/files/ENCFF243TCE/@@download/ENCFF243TCE.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF573CDD bam unfiltered alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF807MUK, ENCFF873QQB 1751061178 ENCODE Processing Pipeline c4416027983d6d78b9d45b2b4a8a27fe https://www.encodeproject.org/files/ENCFF573CDD/@@download/ENCFF573CDD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF536GLO bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF807MUK, ENCFF873QQB 507393688 ENCODE Processing Pipeline ed8d1fb6061be1de84a72992a0e536a6 https://www.encodeproject.org/files/ENCFF536GLO/@@download/ENCFF536GLO.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF961HAZ bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF531OCK, ENCFF643CGH 331966338 ENCODE Processing Pipeline a16d6f763c3ca4699ad409dca82ac7c3 https://www.encodeproject.org/files/ENCFF961HAZ/@@download/ENCFF961HAZ.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF946JUM bigWig signal p-value ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF536GLO, ENCFF574XYY 333522087 ENCODE Processing Pipeline d1018aa7c0bc635e2fe4e0e2496c8b34 https://www.encodeproject.org/files/ENCFF946JUM/@@download/ENCFF946JUM.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF823GGP bigWig fold change over control ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF536GLO, ENCFF574XYY 223974398 ENCODE Processing Pipeline 78f94a3525c056d1427a71808317abe6 https://www.encodeproject.org/files/ENCFF823GGP/@@download/ENCFF823GGP.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF414KIO bigWig signal p-value ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF416LJL 304986091 ENCODE Processing Pipeline 34813ba620075f7dad29efb72d9d6e7b https://www.encodeproject.org/files/ENCFF414KIO/@@download/ENCFF414KIO.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF108SDW bigWig signal p-value ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF187CGT, ENCFF245PJA 269408866 ENCODE Processing Pipeline 8e6a71c9b943be7af6b80adbc5b966cb https://www.encodeproject.org/files/ENCFF108SDW/@@download/ENCFF108SDW.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF190SLM bigWig fold change over control ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF416LJL 223432074 ENCODE Processing Pipeline 3bd02e9d14bd58c1c9b93b6d92888195 https://www.encodeproject.org/files/ENCFF190SLM/@@download/ENCFF190SLM.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF874IOX bigWig signal p-value ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF829HZY, ENCFF961HAZ 271464472 ENCODE Processing Pipeline 35b4f8413b20a98bbe164aa6db0e14ff https://www.encodeproject.org/files/ENCFF874IOX/@@download/ENCFF874IOX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF900SDF bigWig signal p-value ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF416LJL, ENCFF829HZY, ENCFF961HAZ 591910250 ENCODE Processing Pipeline 563dd4d3acaca2c5e6538563a6e8871a https://www.encodeproject.org/files/ENCFF900SDF/@@download/ENCFF900SDF.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF899OJV bigWig fold change over control ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF416LJL, ENCFF829HZY, ENCFF961HAZ 422070990 ENCODE Processing Pipeline e9fb72722bd4efdddf1c686319fa8fd8 https://www.encodeproject.org/files/ENCFF899OJV/@@download/ENCFF899OJV.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF800HOP bigBed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF081GEA 12749792 ENCODE Processing Pipeline 592f88d585967ad2922d6ead5afe4cd0 https://www.encodeproject.org/files/ENCFF800HOP/@@download/ENCFF800HOP.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF325OIN bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF829HZY, ENCFF961HAZ 3774957 ENCODE Processing Pipeline 12bc331790d82cb9eb9a34b7cd820d8b https://www.encodeproject.org/files/ENCFF325OIN/@@download/ENCFF325OIN.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF724JVF bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF416LJL, ENCFF829HZY, ENCFF961HAZ 5639671 ENCODE Processing Pipeline b9a89fc0247de9283709d7e89c87966e https://www.encodeproject.org/files/ENCFF724JVF/@@download/ENCFF724JVF.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF103RHL bed narrowPeak optimal idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF325OIN, ENCFF419RSJ, ENCFF724JVF, ENCFF838VDJ 251066 ENCODE Processing Pipeline 5e36859e8973d66a657e5842fa816c16 https://www.encodeproject.org/files/ENCFF103RHL/@@download/ENCFF103RHL.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF442SFR bigWig signal p-value ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF187CGT, ENCFF245PJA, ENCFF536GLO, ENCFF574XYY 535063588 ENCODE Processing Pipeline 8673a02055b82fdb18acd3d436f2fdeb https://www.encodeproject.org/files/ENCFF442SFR/@@download/ENCFF442SFR.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF643AZY bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF187CGT, ENCFF245PJA 3780692 ENCODE Processing Pipeline 74b066a2b4a0716e0f843177511226d9 https://www.encodeproject.org/files/ENCFF643AZY/@@download/ENCFF643AZY.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF016IWL bigBed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF956WWZ 13257318 ENCODE Processing Pipeline bb4b52b5c05ba99819252a584e56f69e https://www.encodeproject.org/files/ENCFF016IWL/@@download/ENCFF016IWL.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF235UDJ bed narrowPeak conservative idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF325OIN, ENCFF419RSJ, ENCFF724JVF, ENCFF838VDJ 150717 ENCODE Processing Pipeline 501e463fde4f64f1f89e74bf8339cfd9 https://www.encodeproject.org/files/ENCFF235UDJ/@@download/ENCFF235UDJ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF144JME bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF235UDJ 375876 ENCODE Processing Pipeline b51fa0ed4db2aa9db7173a83fd7b717b https://www.encodeproject.org/files/ENCFF144JME/@@download/ENCFF144JME.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF838VDJ bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF416LJL 4814033 ENCODE Processing Pipeline 20dc27e84a8a8cb1d14998b8fc895d47 https://www.encodeproject.org/files/ENCFF838VDJ/@@download/ENCFF838VDJ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF427QQM bigBed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF838VDJ 12805962 ENCODE Processing Pipeline 0e9dbb51a62a83afa600b3a2ecc7e258 https://www.encodeproject.org/files/ENCFF427QQM/@@download/ENCFF427QQM.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF845NPC bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF864EKR 380397 ENCODE Processing Pipeline 8676fb9c9c17ade2608298129a99d527 https://www.encodeproject.org/files/ENCFF845NPC/@@download/ENCFF845NPC.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF480PLD bigBed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF724JVF 13279532 ENCODE Processing Pipeline 90b9c48f1f0d76659a040da7fc5cddfe https://www.encodeproject.org/files/ENCFF480PLD/@@download/ENCFF480PLD.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF970LBJ bigWig fold change over control ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF187CGT, ENCFF245PJA 172023662 ENCODE Processing Pipeline 6abc220b54c20e8cf93f404b5fb0813b https://www.encodeproject.org/files/ENCFF970LBJ/@@download/ENCFF970LBJ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF448ELA bigWig fold change over control ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF829HZY, ENCFF961HAZ 170366045 ENCODE Processing Pipeline d988a64f42072e084ba8fcf913e80a3d https://www.encodeproject.org/files/ENCFF448ELA/@@download/ENCFF448ELA.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF816KCQ bigWig fold change over control ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF187CGT, ENCFF245PJA, ENCFF536GLO, ENCFF574XYY 426462051 ENCODE Processing Pipeline f89809c2efe0499772cb64de97c7fdac https://www.encodeproject.org/files/ENCFF816KCQ/@@download/ENCFF816KCQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF956WWZ bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF187CGT, ENCFF245PJA, ENCFF536GLO, ENCFF574XYY 5643911 ENCODE Processing Pipeline 0e16d8a8ab45ce013458b9a714cf8e58 https://www.encodeproject.org/files/ENCFF956WWZ/@@download/ENCFF956WWZ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF475BBC bigBed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF643AZY 9481369 ENCODE Processing Pipeline fb2e58192e010ae808b403db9b0769e2 https://www.encodeproject.org/files/ENCFF475BBC/@@download/ENCFF475BBC.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF842BKE bigBed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF325OIN 9492147 ENCODE Processing Pipeline 074a0a12d83bc1648f73a810f2d6b7c3 https://www.encodeproject.org/files/ENCFF842BKE/@@download/ENCFF842BKE.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF931BQF bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF718NUA 631792 ENCODE Processing Pipeline c92d273ce5d32f64a15b7d787f23ef58 https://www.encodeproject.org/files/ENCFF931BQF/@@download/ENCFF931BQF.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF081GEA bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF536GLO, ENCFF574XYY 4808755 ENCODE Processing Pipeline 6f68aa14b9f8380db9f70eb8c31d042a https://www.encodeproject.org/files/ENCFF081GEA/@@download/ENCFF081GEA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF864EKR bed narrowPeak conservative idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF081GEA, ENCFF643AZY, ENCFF956WWZ 154360 ENCODE Processing Pipeline b2deae8cbb674788755593336acec2fb https://www.encodeproject.org/files/ENCFF864EKR/@@download/ENCFF864EKR.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF718NUA bed narrowPeak optimal idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF081GEA, ENCFF643AZY, ENCFF956WWZ 249328 ENCODE Processing Pipeline 994d55aff4a2588ec824b795125a1166 https://www.encodeproject.org/files/ENCFF718NUA/@@download/ENCFF718NUA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF634UIS bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF103RHL 637255 ENCODE Processing Pipeline f62401e97457a30b22fc29418967de2e https://www.encodeproject.org/files/ENCFF634UIS/@@download/ENCFF634UIS.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF000QDB bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QDG 406591215 Richard Myers, HAIB fd68648bfc10e5e7976b8e9320f14f99 https://www.encodeproject.org/files/ENCFF000QDB/@@download/ENCFF000QDB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDC bigBed broadPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKR 765350 Richard Myers, HAIB c6ebe6c7f3d67a883aeefda5fa5592c9 https://www.encodeproject.org/files/ENCFF000QDC/@@download/ENCFF000QDC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDD bigBed broadPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKS 1571305 Richard Myers, HAIB cbe387b47a279595cc6dd90a2b203ab8 https://www.encodeproject.org/files/ENCFF000QDD/@@download/ENCFF000QDD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDE bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QDO 926428519 Richard Myers, HAIB bf42dd13eba357c4a8ff7b6171f6b2c5 https://www.encodeproject.org/files/ENCFF000QDE/@@download/ENCFF000QDE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDF bigWig raw signal ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 14938909 Richard Myers, HAIB c0b26908dffb93eedc42bd8086443f29 https://www.encodeproject.org/files/ENCFF000QDF/@@download/ENCFF000QDF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDG fastq reads ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 365214444 Richard Myers, HAIB aaf7bfdbfa35a23d8c48faccdc515c47 https://www.encodeproject.org/files/ENCFF000QDG/@@download/ENCFF000QDG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDI bigWig raw signal ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 56783068 Richard Myers, HAIB d0b176322b5ce42abebaebd746ee4c19 https://www.encodeproject.org/files/ENCFF000QDI/@@download/ENCFF000QDI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000QDO fastq reads ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 955304762 Richard Myers, HAIB 8df2042bfdd206b201df3baafe25c775 https://www.encodeproject.org/files/ENCFF000QDO/@@download/ENCFF000QDO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF001UKR bed broadPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 413957 Richard Myers, HAIB 8b0e92f2c22e3a57cd52c99ea7405de8 https://www.encodeproject.org/files/ENCFF001UKR/@@download/ENCFF001UKR.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF001UKS bed broadPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 795112 Richard Myers, HAIB 9ef9969ecd0c72beb4ca583b9935b0fd https://www.encodeproject.org/files/ENCFF001UKS/@@download/ENCFF001UKS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF002CMH bed narrowPeak optimal idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 482481 ENCODE Consortium Analysis Working Group 30682bdafd5195e37a07eb7a47a18ebf https://www.encodeproject.org/files/ENCFF002CMH/@@download/ENCFF002CMH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth ENCFF164YQT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMH 1241214 ENCODE Consortium 048dbe48c0e4ca1b2d09fda1d959848d https://www.encodeproject.org/files/ENCFF164YQT/@@download/ENCFF164YQT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF037VJL bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDG, ENCFF643CGH 293759242 ENCODE Processing Pipeline f6a219a3686a139e28762c3b277d8345 https://www.encodeproject.org/files/ENCFF037VJL/@@download/ENCFF037VJL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF044YYE bam unfiltered alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDG, ENCFF643CGH 489871620 ENCODE Processing Pipeline c8ae90daeae7c7ed0a10bb183a06b6cf https://www.encodeproject.org/files/ENCFF044YYE/@@download/ENCFF044YYE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF277YIL bam unfiltered alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDO, ENCFF643CGH 1167573131 ENCODE Processing Pipeline b5d0e54fc1387f22ca72d2af95184ea1 https://www.encodeproject.org/files/ENCFF277YIL/@@download/ENCFF277YIL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF115UJX bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDO, ENCFF643CGH 607400278 ENCODE Processing Pipeline c3d44d2089ef1139c1a9bd4f977a02d7 https://www.encodeproject.org/files/ENCFF115UJX/@@download/ENCFF115UJX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF029OAZ bam unfiltered alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDG, ENCFF807MUK 489526992 ENCODE Processing Pipeline a4761a7de106a85cb6809d4a38ca90de https://www.encodeproject.org/files/ENCFF029OAZ/@@download/ENCFF029OAZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF788MNU bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDG, ENCFF807MUK 293979846 ENCODE Processing Pipeline cc8f5b992246f4e23fa74411c7ca3a91 https://www.encodeproject.org/files/ENCFF788MNU/@@download/ENCFF788MNU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF669ELS bam unfiltered alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDO, ENCFF807MUK 1167290114 ENCODE Processing Pipeline 06bc905c926bf139857835d4e3ace360 https://www.encodeproject.org/files/ENCFF669ELS/@@download/ENCFF669ELS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF196OAS bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDO, ENCFF807MUK 607852691 ENCODE Processing Pipeline a58e9b6256175d512f082988b093d258 https://www.encodeproject.org/files/ENCFF196OAS/@@download/ENCFF196OAS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF496ODB bigWig signal p-value ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF196OAS, ENCFF750MIM 214694035 ENCODE Processing Pipeline 7f4de1854144ebcf5dbaca504f17a7cd https://www.encodeproject.org/files/ENCFF496ODB/@@download/ENCFF496ODB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF827GEM bigWig fold change over control ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF196OAS, ENCFF750MIM, ENCFF788MNU 302196059 ENCODE Processing Pipeline f159f4b8d478abd7ff8b6a3a8120774b https://www.encodeproject.org/files/ENCFF827GEM/@@download/ENCFF827GEM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF519QQX bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF788MNU 5120602 ENCODE Processing Pipeline 85d929ad32fc06df986203b6fc53cdcf https://www.encodeproject.org/files/ENCFF519QQX/@@download/ENCFF519QQX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF065RJC bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF196OAS, ENCFF750MIM, ENCFF788MNU 6501159 ENCODE Processing Pipeline 07a3dff1a8001a9b8ba175f7a041e0dc https://www.encodeproject.org/files/ENCFF065RJC/@@download/ENCFF065RJC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF707AWX bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037VJL, ENCFF115UJX, ENCFF772PJM 6498050 ENCODE Processing Pipeline 6ed3b2d7c302f43f0e7918437b74c60a https://www.encodeproject.org/files/ENCFF707AWX/@@download/ENCFF707AWX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF561TMA bigBed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF510TJQ 11916977 ENCODE Processing Pipeline b614c8320a341cc60d2725238baf6d71 https://www.encodeproject.org/files/ENCFF561TMA/@@download/ENCFF561TMA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF824ANA bed narrowPeak conservative idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF368BII, ENCFF419RSJ, ENCFF510TJQ, ENCFF707AWX 417093 ENCODE Processing Pipeline 493eff3c7299ad713724ce46b793612a https://www.encodeproject.org/files/ENCFF824ANA/@@download/ENCFF824ANA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF134HVN bigBed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF065RJC 12019084 ENCODE Processing Pipeline 96e6bb9de83b802950f57ae45681f11e https://www.encodeproject.org/files/ENCFF134HVN/@@download/ENCFF134HVN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF845FTJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF879HIG 861524 ENCODE Processing Pipeline 3ee0bc465b7c99c1de48935ad0896ebd https://www.encodeproject.org/files/ENCFF845FTJ/@@download/ENCFF845FTJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF542DOG bed narrowPeak optimal idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF065RJC, ENCFF306TSB, ENCFF519QQX 498177 ENCODE Processing Pipeline 0598e742722b3d8250df0367c201924d https://www.encodeproject.org/files/ENCFF542DOG/@@download/ENCFF542DOG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF338AQL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF542DOG 969945 ENCODE Processing Pipeline 5993a8c3ed103b82ac8ed07fdc7ae0d4 https://www.encodeproject.org/files/ENCFF338AQL/@@download/ENCFF338AQL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF811SWR bigWig fold change over control ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037VJL, ENCFF115UJX, ENCFF772PJM 304892865 ENCODE Processing Pipeline 91a28efe5340f1eb0ba84073b94190ab https://www.encodeproject.org/files/ENCFF811SWR/@@download/ENCFF811SWR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF368BII bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037VJL, ENCFF772PJM 5119095 ENCODE Processing Pipeline dfdbbc6375db04b652c160e5eeeba32c https://www.encodeproject.org/files/ENCFF368BII/@@download/ENCFF368BII.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF732ZXO bigWig signal p-value ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF788MNU 183249114 ENCODE Processing Pipeline 7c9499f39869e617d4d7a9f270067e45 https://www.encodeproject.org/files/ENCFF732ZXO/@@download/ENCFF732ZXO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF036KTV bigWig fold change over control ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF788MNU 125381747 ENCODE Processing Pipeline 969cb8453fc37084b71b3ad2f7fd3cc0 https://www.encodeproject.org/files/ENCFF036KTV/@@download/ENCFF036KTV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF210ADZ bigWig signal p-value ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF196OAS, ENCFF750MIM, ENCFF788MNU 209300612 ENCODE Processing Pipeline ef6eeb698e4ebefbc8e5a600aebe688d https://www.encodeproject.org/files/ENCFF210ADZ/@@download/ENCFF210ADZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF750ONR bigWig fold change over control ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF196OAS, ENCFF750MIM 215333029 ENCODE Processing Pipeline 557340e23649cee4f0be486d415b9771 https://www.encodeproject.org/files/ENCFF750ONR/@@download/ENCFF750ONR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF306TSB bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF196OAS, ENCFF750MIM 6039123 ENCODE Processing Pipeline c11321251b025b40027c6c8665b8ea7a https://www.encodeproject.org/files/ENCFF306TSB/@@download/ENCFF306TSB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF281WLZ bigBed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF519QQX 11875647 ENCODE Processing Pipeline efd14dba352095b1f9aef7ff2dd083f1 https://www.encodeproject.org/files/ENCFF281WLZ/@@download/ENCFF281WLZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF785FHN bigBed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF306TSB 11912509 ENCODE Processing Pipeline c3b1d5f172be4f32ae13bffb75272380 https://www.encodeproject.org/files/ENCFF785FHN/@@download/ENCFF785FHN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF879HIG bed narrowPeak conservative idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF065RJC, ENCFF306TSB, ENCFF519QQX 417747 ENCODE Processing Pipeline 182719848aa8f72e325f493bcb864739 https://www.encodeproject.org/files/ENCFF879HIG/@@download/ENCFF879HIG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF993MRG bigWig signal p-value ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF115UJX, ENCFF772PJM 214634304 ENCODE Processing Pipeline a2bb86cfb810cb890fe355f95dda0937 https://www.encodeproject.org/files/ENCFF993MRG/@@download/ENCFF993MRG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF866NHX bigWig signal p-value ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037VJL, ENCFF115UJX, ENCFF772PJM 209395872 ENCODE Processing Pipeline 34aac58b0e3ae1012447ae49586b6dd6 https://www.encodeproject.org/files/ENCFF866NHX/@@download/ENCFF866NHX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF613IKP bigWig fold change over control ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF115UJX, ENCFF772PJM 218387001 ENCODE Processing Pipeline 3a5fe372180f4a3605030653fd405afb https://www.encodeproject.org/files/ENCFF613IKP/@@download/ENCFF613IKP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF220XDU bigBed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF368BII 11883435 ENCODE Processing Pipeline 907b6ce11132dc69fb5345efb88c0926 https://www.encodeproject.org/files/ENCFF220XDU/@@download/ENCFF220XDU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF122XDI bigBed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF707AWX 12023578 ENCODE Processing Pipeline d82df5f9cb808dfbc34bb8a0ef0d567c https://www.encodeproject.org/files/ENCFF122XDI/@@download/ENCFF122XDI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF881JQV bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF824ANA 862141 ENCODE Processing Pipeline 34d376c049496ed33de6d9a4345dce63 https://www.encodeproject.org/files/ENCFF881JQV/@@download/ENCFF881JQV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF839TWP bigWig signal p-value ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037VJL, ENCFF772PJM 215453521 ENCODE Processing Pipeline a9312c31985243ad27fefa18127324e7 https://www.encodeproject.org/files/ENCFF839TWP/@@download/ENCFF839TWP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF510TJQ bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF115UJX, ENCFF772PJM 6038249 ENCODE Processing Pipeline 4ddf4e319a19a86a6139dd0a79ba50d3 https://www.encodeproject.org/files/ENCFF510TJQ/@@download/ENCFF510TJQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF404FQO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF053XYZ 967810 ENCODE Processing Pipeline 90cb53e2887d69e7ce16c243dfcc80e6 https://www.encodeproject.org/files/ENCFF404FQO/@@download/ENCFF404FQO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF367EEF bigWig fold change over control ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037VJL, ENCFF772PJM 125118119 ENCODE Processing Pipeline 0e640be6367b904cb1ed52153d0fc50b https://www.encodeproject.org/files/ENCFF367EEF/@@download/ENCFF367EEF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF053XYZ bed narrowPeak optimal idr thresholded peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF368BII, ENCFF419RSJ, ENCFF510TJQ, ENCFF707AWX 496748 ENCODE Processing Pipeline ca96abffe1596788d7d0f471d41f959c https://www.encodeproject.org/files/ENCFF053XYZ/@@download/ENCFF053XYZ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000XMA bam alignments ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XMD 353595046 Peggy Farnham, USC eb2bd3aff8b492b07aef2f905b424442 https://www.encodeproject.org/files/ENCFF000XMA/@@download/ENCFF000XMA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XMB bam alignments ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XMF 255954010 Peggy Farnham, USC 9d35a364c46b33c4ec49181ea6bb1e98 https://www.encodeproject.org/files/ENCFF000XMB/@@download/ENCFF000XMB.bam hg19 released low read length biological replicates with identical biosample ENCFF000XMC bigBed narrowPeak peaks ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJL 224348 Peggy Farnham, USC 21433991600273efb09af873b134dd70 https://www.encodeproject.org/files/ENCFF000XMC/@@download/ENCFF000XMC.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XMD fastq reads ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 688907730 Peggy Farnham, USC 4290a318afb80d4ea52b981a8edb3e3e https://www.encodeproject.org/files/ENCFF000XMD/@@download/ENCFF000XMD.fastq.gz Illumina Genome Analyzer II /files/ENCFF000XGR/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XMF fastq reads ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 426509581 Peggy Farnham, USC 61a8cea2d98336514a7887c887538c50 https://www.encodeproject.org/files/ENCFF000XMF/@@download/ENCFF000XMF.fastq.gz Illumina Genome Analyzer II /files/ENCFF000XGR/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XMH bigWig signal ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 261362524 Peggy Farnham, USC aaef7e7c9d39e777af5448efb948f64e https://www.encodeproject.org/files/ENCFF000XMH/@@download/ENCFF000XMH.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001VJL bed narrowPeak peaks ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 74732 Peggy Farnham, USC 3873c87228900bef00ea720074130ba3 https://www.encodeproject.org/files/ENCFF001VJL/@@download/ENCFF001VJL.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CTJ bed narrowPeak optimal idr thresholded peaks ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 76399 ENCODE Consortium Analysis Working Group 2e76c88be228740a9d90c18ab9105425 https://www.encodeproject.org/files/ENCFF002CTJ/@@download/ENCFF002CTJ.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF447EIA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTJ 265370 ENCODE Consortium f1c6c5fad05640dd08ad57f6ae4d6f27 https://www.encodeproject.org/files/ENCFF447EIA/@@download/ENCFF447EIA.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000QSV bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QTC 385279756 Richard Myers, HAIB 71c96c5ae81d93c8559eb6f33f188d4e https://www.encodeproject.org/files/ENCFF000QSV/@@download/ENCFF000QSV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QSW bigBed broadPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UOF 937475 Richard Myers, HAIB 0b19305466bc1cb8f910ff67854915a8 https://www.encodeproject.org/files/ENCFF000QSW/@@download/ENCFF000QSW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QSX bigBed broadPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UOG 772910 Richard Myers, HAIB 50d31784e12adbe450c6d52a1ae8811e https://www.encodeproject.org/files/ENCFF000QSX/@@download/ENCFF000QSX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QSY bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QTI 1288578934 Richard Myers, HAIB 24fe9bf355ed531d4d8b72e3afc0c4d9 https://www.encodeproject.org/files/ENCFF000QSY/@@download/ENCFF000QSY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QSZ bigWig raw signal ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 32873774 Richard Myers, HAIB c0ad199cbeeeb4f4f360f38190f8efe0 https://www.encodeproject.org/files/ENCFF000QSZ/@@download/ENCFF000QSZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000QTB bigWig raw signal ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 63711463 Richard Myers, HAIB 488641dbc0be4dcf855e4609a6685f4c https://www.encodeproject.org/files/ENCFF000QTB/@@download/ENCFF000QTB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF000QTC fastq reads ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 699817217 Richard Myers, HAIB 6ec14909fecdc6ee24def7f3bbdadccb https://www.encodeproject.org/files/ENCFF000QTC/@@download/ENCFF000QTC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QTV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QTI fastq reads ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1661248447 Richard Myers, HAIB d51e99a07146302fff1098d2ee3ae067 https://www.encodeproject.org/files/ENCFF000QTI/@@download/ENCFF000QTI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QTV/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UOF bed broadPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 452059 Richard Myers, HAIB c0431d923b150e2ca50ab3cb801dd4e1 https://www.encodeproject.org/files/ENCFF001UOF/@@download/ENCFF001UOF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF001UOG bed broadPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 451811 Richard Myers, HAIB a1dfadb0ce9fe74fd8de063903873051 https://www.encodeproject.org/files/ENCFF001UOG/@@download/ENCFF001UOG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF002CNB bed narrowPeak optimal idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 250789 ENCODE Consortium Analysis Working Group ad00d66bbffee15754ff260bf663a073 https://www.encodeproject.org/files/ENCFF002CNB/@@download/ENCFF002CNB.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF129QRS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNB 685542 ENCODE Consortium f4f2ae8418825c2df89c983990d5434d https://www.encodeproject.org/files/ENCFF129QRS/@@download/ENCFF129QRS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF630ZLF bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QTC, ENCFF643CGH 565733029 ENCODE Processing Pipeline 12114d7aefabda233a0269dadd313795 https://www.encodeproject.org/files/ENCFF630ZLF/@@download/ENCFF630ZLF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF365AWP bam unfiltered alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QTC, ENCFF643CGH 917413382 ENCODE Processing Pipeline 64ca07b098761ec81f36bd7ac296120f https://www.encodeproject.org/files/ENCFF365AWP/@@download/ENCFF365AWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF993CNT bam unfiltered alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QTI, ENCFF643CGH 1734388026 ENCODE Processing Pipeline ef4a8cec1a9ffcc8368031ef7321993c https://www.encodeproject.org/files/ENCFF993CNT/@@download/ENCFF993CNT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF635PGS bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QTI, ENCFF643CGH 873498891 ENCODE Processing Pipeline d9fd91833978cdabf72a0784c9df874c https://www.encodeproject.org/files/ENCFF635PGS/@@download/ENCFF635PGS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF699EDD bam unfiltered alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QTC, ENCFF807MUK 916025665 ENCODE Processing Pipeline c2394c7d2dfa8d6b2fd6c146981af2af https://www.encodeproject.org/files/ENCFF699EDD/@@download/ENCFF699EDD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF065NPZ bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QTC, ENCFF807MUK 565866240 ENCODE Processing Pipeline dd338977077c3af667bf1df754acdb04 https://www.encodeproject.org/files/ENCFF065NPZ/@@download/ENCFF065NPZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF036FEW bam unfiltered alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QTI, ENCFF807MUK 1729537169 ENCODE Processing Pipeline 3ddb7b7421f1b5d10ebfdc753004afc1 https://www.encodeproject.org/files/ENCFF036FEW/@@download/ENCFF036FEW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF533ZHL bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QTI, ENCFF807MUK 873823958 ENCODE Processing Pipeline 68aea9298aa833cf19675dec1c1e8594 https://www.encodeproject.org/files/ENCFF533ZHL/@@download/ENCFF533ZHL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF739ESG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF003OCH 1074639 ENCODE Processing Pipeline d6918c1cf13dca5a8ab96da79f3a6d0c https://www.encodeproject.org/files/ENCFF739ESG/@@download/ENCFF739ESG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF897SRB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF426UBL 970810 ENCODE Processing Pipeline 97460b138365be1e68af4324341f6640 https://www.encodeproject.org/files/ENCFF897SRB/@@download/ENCFF897SRB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF541ZKH bigWig signal p-value ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF317CKP, ENCFF630ZLF 389656635 ENCODE Processing Pipeline 0b1f7da9e828015ae1bd0ae87a684068 https://www.encodeproject.org/files/ENCFF541ZKH/@@download/ENCFF541ZKH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF667CGC bigWig fold change over control ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF317CKP, ENCFF635PGS 383033364 ENCODE Processing Pipeline 7d98eaa896d398cd6ae53d6d901b8007 https://www.encodeproject.org/files/ENCFF667CGC/@@download/ENCFF667CGC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF133KSG bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF317CKP, ENCFF630ZLF, ENCFF635PGS 6994662 ENCODE Processing Pipeline b0501cf7573bdfad40ccf6819f53c3de https://www.encodeproject.org/files/ENCFF133KSG/@@download/ENCFF133KSG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF719XGC bigBed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF085FIN 12371330 ENCODE Processing Pipeline b6e0d5f2eabbae82fcbfab8cbe526938 https://www.encodeproject.org/files/ENCFF719XGC/@@download/ENCFF719XGC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF003OCH bed narrowPeak optimal idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF085FIN, ENCFF133KSG, ENCFF419RSJ, ENCFF884OWM 461198 ENCODE Processing Pipeline 6bebb3f1bfedef1317c5fe913472b664 https://www.encodeproject.org/files/ENCFF003OCH/@@download/ENCFF003OCH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF701OMN bigWig signal p-value ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF317CKP, ENCFF630ZLF, ENCFF635PGS 488726839 ENCODE Processing Pipeline c255c71c2348568219266fb8770754e6 https://www.encodeproject.org/files/ENCFF701OMN/@@download/ENCFF701OMN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF426UBL bed narrowPeak conservative idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF085FIN, ENCFF133KSG, ENCFF419RSJ, ENCFF884OWM 401848 ENCODE Processing Pipeline b2d5083a893081d2bafa33817fc76700 https://www.encodeproject.org/files/ENCFF426UBL/@@download/ENCFF426UBL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF567DPU bigWig fold change over control ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF317CKP, ENCFF630ZLF, ENCFF635PGS 556726943 ENCODE Processing Pipeline 7ff667689411230ff847157d36b31a7a https://www.encodeproject.org/files/ENCFF567DPU/@@download/ENCFF567DPU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF884OWM bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF317CKP, ENCFF630ZLF 6786690 ENCODE Processing Pipeline 125ad13c8ba2d1c63d7546dbcc4f12d1 https://www.encodeproject.org/files/ENCFF884OWM/@@download/ENCFF884OWM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF676LIU bigWig fold change over control ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF317CKP, ENCFF630ZLF 278791138 ENCODE Processing Pipeline 97f4597bd0b577ef324b0a6d09b007b5 https://www.encodeproject.org/files/ENCFF676LIU/@@download/ENCFF676LIU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF126CPK bigWig signal p-value ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF317CKP, ENCFF635PGS 411991272 ENCODE Processing Pipeline 10be4411c27dc55aa80419c28139fa9a https://www.encodeproject.org/files/ENCFF126CPK/@@download/ENCFF126CPK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF085FIN bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF317CKP, ENCFF635PGS 6442110 ENCODE Processing Pipeline 82ce2de446bccf3ea766feefb8eb1e5a https://www.encodeproject.org/files/ENCFF085FIN/@@download/ENCFF085FIN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF912QJF bigBed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF884OWM 11735408 ENCODE Processing Pipeline fcc493242357ad3410d250273dd89e5d https://www.encodeproject.org/files/ENCFF912QJF/@@download/ENCFF912QJF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF099CNW bigBed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF133KSG 11965082 ENCODE Processing Pipeline 9aeef13d167cb185d098bbff3feee64b https://www.encodeproject.org/files/ENCFF099CNW/@@download/ENCFF099CNW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF723FQX bigWig fold change over control ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF065NPZ, ENCFF269DQZ 274733276 ENCODE Processing Pipeline b2d6cc354e216b8a77b2a073a164fd42 https://www.encodeproject.org/files/ENCFF723FQX/@@download/ENCFF723FQX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF664OBH bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF269DQZ, ENCFF533ZHL 6449095 ENCODE Processing Pipeline be953678ce5d4619b2db06ef1201f885 https://www.encodeproject.org/files/ENCFF664OBH/@@download/ENCFF664OBH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF054JLK bigBed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF362UBD 11451568 ENCODE Processing Pipeline a248da316e596a2218aa0171cac32064 https://www.encodeproject.org/files/ENCFF054JLK/@@download/ENCFF054JLK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF039FSY bigWig signal p-value ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF065NPZ, ENCFF269DQZ, ENCFF533ZHL 485069944 ENCODE Processing Pipeline 0e41949f74c407392868f12a07e0e89d https://www.encodeproject.org/files/ENCFF039FSY/@@download/ENCFF039FSY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF155ALO bigWig fold change over control ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF269DQZ, ENCFF533ZHL 388843762 ENCODE Processing Pipeline d47fe7238fddb814bd0b506be4756710 https://www.encodeproject.org/files/ENCFF155ALO/@@download/ENCFF155ALO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF032OMT bigBed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF706ZMD 11964873 ENCODE Processing Pipeline 47660be334e291b070c6299dd8e508b8 https://www.encodeproject.org/files/ENCFF032OMT/@@download/ENCFF032OMT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF390WDR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF484UIX 969400 ENCODE Processing Pipeline a20e3217a30ae1abe9e26a31835ef039 https://www.encodeproject.org/files/ENCFF390WDR/@@download/ENCFF390WDR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF043IXU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF686GFT 1083056 ENCODE Processing Pipeline fc8a83a40030a75ec7f8a7c4ac2f7f58 https://www.encodeproject.org/files/ENCFF043IXU/@@download/ENCFF043IXU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF438WWM bigWig signal p-value ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF065NPZ, ENCFF269DQZ 413577151 ENCODE Processing Pipeline a44373bd4ec28027368a9279039da1d4 https://www.encodeproject.org/files/ENCFF438WWM/@@download/ENCFF438WWM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF211NKC bigBed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF664OBH 12376856 ENCODE Processing Pipeline 7103ccb5a741acf536225b75da16e108 https://www.encodeproject.org/files/ENCFF211NKC/@@download/ENCFF211NKC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF086BCA bigWig signal p-value ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF269DQZ, ENCFF533ZHL 419053523 ENCODE Processing Pipeline 2bcde36f4789ac6d50dd5eb2e097004b https://www.encodeproject.org/files/ENCFF086BCA/@@download/ENCFF086BCA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF859DJI bigWig fold change over control ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF065NPZ, ENCFF269DQZ, ENCFF533ZHL 548713826 ENCODE Processing Pipeline 389da719911f73402cedb0a6a6814a68 https://www.encodeproject.org/files/ENCFF859DJI/@@download/ENCFF859DJI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF362UBD bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF065NPZ, ENCFF269DQZ 6553858 ENCODE Processing Pipeline 25a6f2b04ea8bef474f09832a310977c https://www.encodeproject.org/files/ENCFF362UBD/@@download/ENCFF362UBD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF706ZMD bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF065NPZ, ENCFF269DQZ, ENCFF533ZHL 6995236 ENCODE Processing Pipeline 68bd35648dbbfeb4a54e31c1cba8e264 https://www.encodeproject.org/files/ENCFF706ZMD/@@download/ENCFF706ZMD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF484UIX bed narrowPeak conservative idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF362UBD, ENCFF664OBH, ENCFF706ZMD 401420 ENCODE Processing Pipeline 72d09c8f86c22cb82e543d3363fe97c8 https://www.encodeproject.org/files/ENCFF484UIX/@@download/ENCFF484UIX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF686GFT bed narrowPeak optimal idr thresholded peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF362UBD, ENCFF664OBH, ENCFF706ZMD 467634 ENCODE Processing Pipeline ca32ff65d16feff62a5b3eae56a6512f https://www.encodeproject.org/files/ENCFF686GFT/@@download/ENCFF686GFT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QYS bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QZG 1507897199 Richard Myers, HAIB ac4cb6a5a5850f06a7f6bddee790bb3f https://www.encodeproject.org/files/ENCFF000QYS/@@download/ENCFF000QYS.bam hg19 archived biological replicates with identical biosample missing control alignments ENCFF000QYT bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZK 2769883290 Richard Myers, HAIB 7a75c89b05f1918298388e59a4a4909f https://www.encodeproject.org/files/ENCFF000QYT/@@download/ENCFF000QYT.bam hg19 archived biological replicates with identical biosample missing control alignments ENCFF000QYU bigBed broadPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPJ 607523 Richard Myers, HAIB 5c24ef24ef50d11153899525241455ad https://www.encodeproject.org/files/ENCFF000QYU/@@download/ENCFF000QYU.bigBed hg19 archived biological replicates with identical biosample missing control alignments ENCFF000QYV bigBed broadPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPK 426947 Richard Myers, HAIB c4139e2359bb1efdbcfdb0fdbab31723 https://www.encodeproject.org/files/ENCFF000QYV/@@download/ENCFF000QYV.bigBed hg19 archived biological replicates with identical biosample missing control alignments ENCFF000QYX bigWig raw signal ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 252992116 Richard Myers, HAIB 7f6455fc88944c88c1aec366af632673 https://www.encodeproject.org/files/ENCFF000QYX/@@download/ENCFF000QYX.bigWig hg19 archived missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000QYY bigWig raw signal ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 319301766 Richard Myers, HAIB feb7aaf0e8667fc6842fdaf4009f9b19 https://www.encodeproject.org/files/ENCFF000QYY/@@download/ENCFF000QYY.bigWig hg19 archived missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000QZG fastq reads ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1545885817 Richard Myers, HAIB ce8688c323545327142ac64730d1c004 https://www.encodeproject.org/files/ENCFF000QZG/@@download/ENCFF000QZG.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample missing control alignments ENCFF000QZK fastq reads ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2795551152 Richard Myers, HAIB 02965087273798e452d550a5dbb97bd0 https://www.encodeproject.org/files/ENCFF000QZK/@@download/ENCFF000QZK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample missing control alignments ENCFF001UPJ bed broadPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 1 393093 Richard Myers, HAIB 59d7dcce4f21ed0df47323a697157052 https://www.encodeproject.org/files/ENCFF001UPJ/@@download/ENCFF001UPJ.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UPK bed broadPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 1 240659 Richard Myers, HAIB 0662e4ff28887f970cb8aafe3c1f012c https://www.encodeproject.org/files/ENCFF001UPK/@@download/ENCFF001UPK.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample missing control alignments ENCFF328FRQ bam unfiltered alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QZK, ENCFF807MUK 2972596342 ENCODE Processing Pipeline ca20a6fee5dc0c5b337ccf20530db82d https://www.encodeproject.org/files/ENCFF328FRQ/@@download/ENCFF328FRQ.bam hg19 released biological replicates with identical biosample missing control alignments ENCFF129GZZ bam unfiltered alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QZG, ENCFF643CGH 1619883532 ENCODE Processing Pipeline b1a4032f2da8eb5828cbbcb8f491b584 https://www.encodeproject.org/files/ENCFF129GZZ/@@download/ENCFF129GZZ.bam GRCh38 released biological replicates with identical biosample missing control alignments ENCFF880NAC bam unfiltered alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QZK, ENCFF643CGH 2983006675 ENCODE Processing Pipeline 9f93f43f26c9a3d209e7dbe8ed21a819 https://www.encodeproject.org/files/ENCFF880NAC/@@download/ENCFF880NAC.bam GRCh38 released biological replicates with identical biosample missing control alignments ENCFF507TFC bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QZG, ENCFF643CGH 1264468403 ENCODE Processing Pipeline d1b881453df5e2c425df258571952462 https://www.encodeproject.org/files/ENCFF507TFC/@@download/ENCFF507TFC.bam GRCh38 released biological replicates with identical biosample missing control alignments ENCFF839BYC bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QZG, ENCFF807MUK 1264818201 ENCODE Processing Pipeline 2ce3a3cde18098d348f808b99ab0bdd8 https://www.encodeproject.org/files/ENCFF839BYC/@@download/ENCFF839BYC.bam hg19 released biological replicates with identical biosample missing control alignments ENCFF043VBN bam unfiltered alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QZG, ENCFF807MUK 1616161664 ENCODE Processing Pipeline 5c7d6c4588b3129dc6c907cc6af9e90b https://www.encodeproject.org/files/ENCFF043VBN/@@download/ENCFF043VBN.bam hg19 released biological replicates with identical biosample missing control alignments ENCFF697VPH bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QZK, ENCFF643CGH 2221003407 ENCODE Processing Pipeline 1c76822edae5df8fee50278a33dfa586 https://www.encodeproject.org/files/ENCFF697VPH/@@download/ENCFF697VPH.bam GRCh38 released biological replicates with identical biosample missing control alignments ENCFF189JRN bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QZK, ENCFF807MUK 2221141812 ENCODE Processing Pipeline b239d5b0bed5c520331056f0d86a26ef https://www.encodeproject.org/files/ENCFF189JRN/@@download/ENCFF189JRN.bam hg19 released biological replicates with identical biosample missing control alignments ENCFF694UHP bigWig signal p-value ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF078LPR, ENCFF436ZGI, ENCFF839BYC 661582537 ENCODE Processing Pipeline 8854a7f197d76cff911e139f555c8559 https://www.encodeproject.org/files/ENCFF694UHP/@@download/ENCFF694UHP.bigWig hg19 released biological replicates with identical biosample missing control alignments ENCFF632OZB bigWig signal p-value ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI 828715801 ENCODE Processing Pipeline 76243b6359b70e4b4e156bae18694d7a https://www.encodeproject.org/files/ENCFF632OZB/@@download/ENCFF632OZB.bigWig hg19 released biological replicates with identical biosample missing control alignments ENCFF276HDG bigWig signal p-value ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI, ENCFF839BYC 913704962 ENCODE Processing Pipeline 5635131c4fd00cf1b2b4e5ea86da33c6 https://www.encodeproject.org/files/ENCFF276HDG/@@download/ENCFF276HDG.bigWig hg19 released biological replicates with identical biosample missing control alignments ENCFF611VUO bigWig fold change over control ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF078LPR, ENCFF436ZGI, ENCFF839BYC 616216535 ENCODE Processing Pipeline 9d9a4c6245a30a078aa81c570b83c30f https://www.encodeproject.org/files/ENCFF611VUO/@@download/ENCFF611VUO.bigWig hg19 released biological replicates with identical biosample missing control alignments ENCFF215WJC bigWig fold change over control ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI 820253098 ENCODE Processing Pipeline 14a5b54704beb3b4139e18f49606a21c https://www.encodeproject.org/files/ENCFF215WJC/@@download/ENCFF215WJC.bigWig hg19 released biological replicates with identical biosample missing control alignments ENCFF307ORU bigWig fold change over control ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI, ENCFF839BYC 1121182481 ENCODE Processing Pipeline a1fe7756f5009cd7e0c5a3601cc6d002 https://www.encodeproject.org/files/ENCFF307ORU/@@download/ENCFF307ORU.bigWig hg19 released biological replicates with identical biosample missing control alignments ENCFF514HVB bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF078LPR, ENCFF436ZGI, ENCFF839BYC 5706459 ENCODE Processing Pipeline c5c1523860d58e101f935ddd201f7736 https://www.encodeproject.org/files/ENCFF514HVB/@@download/ENCFF514HVB.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF866YBG bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI 5679032 ENCODE Processing Pipeline d9c074312b0a7c04ed8fac5b05a55355 https://www.encodeproject.org/files/ENCFF866YBG/@@download/ENCFF866YBG.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF101JCE bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI, ENCFF839BYC 6480636 ENCODE Processing Pipeline 46d07f0bb54478eb014c4849491ad91b https://www.encodeproject.org/files/ENCFF101JCE/@@download/ENCFF101JCE.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF040FMV bigBed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF514HVB 11209542 ENCODE Processing Pipeline 0223a81a5092fbafb05ac22ac8c81e4e https://www.encodeproject.org/files/ENCFF040FMV/@@download/ENCFF040FMV.bigBed hg19 released biological replicates with identical biosample missing control alignments ENCFF017VIF bigBed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF866YBG 11328849 ENCODE Processing Pipeline 49eb85d8126ddc017797c59a25bd0d69 https://www.encodeproject.org/files/ENCFF017VIF/@@download/ENCFF017VIF.bigBed hg19 released biological replicates with identical biosample missing control alignments ENCFF911YCG bigBed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF101JCE 13702519 ENCODE Processing Pipeline b02721ece340ec7aa02dd49ef4e47e40 https://www.encodeproject.org/files/ENCFF911YCG/@@download/ENCFF911YCG.bigBed hg19 released biological replicates with identical biosample missing control alignments ENCFF598ZLV bed narrowPeak optimal idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF101JCE, ENCFF514HVB, ENCFF866YBG 676842 ENCODE Processing Pipeline 3f6042bd4ab7bb38270b70206d900dd3 https://www.encodeproject.org/files/ENCFF598ZLV/@@download/ENCFF598ZLV.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF911WUS bed narrowPeak conservative idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF101JCE, ENCFF514HVB, ENCFF866YBG 621236 ENCODE Processing Pipeline 9e76f36d81674656dc7b83411482085d https://www.encodeproject.org/files/ENCFF911WUS/@@download/ENCFF911WUS.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF030BUN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF598ZLV 1320563 ENCODE Processing Pipeline 7d9f9fe4c0820c2ae701a7b0cbb8063e https://www.encodeproject.org/files/ENCFF030BUN/@@download/ENCFF030BUN.bigBed hg19 released biological replicates with identical biosample missing control alignments ENCFF268LGW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF911WUS 1233777 ENCODE Processing Pipeline f543a0a2739534396eb81c330fcee49f https://www.encodeproject.org/files/ENCFF268LGW/@@download/ENCFF268LGW.bigBed hg19 released biological replicates with identical biosample missing control alignments ENCFF118FAD bigWig signal p-value ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF697VPH 729319499 ENCODE Processing Pipeline dfef246ad4955a3e25b671c090443f7d https://www.encodeproject.org/files/ENCFF118FAD/@@download/ENCFF118FAD.bigWig GRCh38 released biological replicates with identical biosample missing control alignments ENCFF314FHH bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF697VPH 5676301 ENCODE Processing Pipeline 59d184e970b2b6beee5facc8c65d522d https://www.encodeproject.org/files/ENCFF314FHH/@@download/ENCFF314FHH.bed.gz GRCh38 released biological replicates with identical biosample missing control alignments ENCFF775ZJV bigBed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF314FHH 11334673 ENCODE Processing Pipeline 489545c75e5dee11a38f62853c8921ea https://www.encodeproject.org/files/ENCFF775ZJV/@@download/ENCFF775ZJV.bigBed GRCh38 released biological replicates with identical biosample missing control alignments ENCFF720DEN bigWig signal p-value ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF507TFC 621339123 ENCODE Processing Pipeline 9a0fa0fe6a564f4e527534509a220aad https://www.encodeproject.org/files/ENCFF720DEN/@@download/ENCFF720DEN.bigWig GRCh38 released biological replicates with identical biosample missing control alignments ENCFF246HKM bed narrowPeak optimal idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF314FHH, ENCFF419RSJ, ENCFF682AGQ, ENCFF773HQL 679307 ENCODE Processing Pipeline d09e015723a8dd85105043ce700ac8fe https://www.encodeproject.org/files/ENCFF246HKM/@@download/ENCFF246HKM.bed.gz GRCh38 released biological replicates with identical biosample missing control alignments ENCFF089OSZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF246HKM 1325901 ENCODE Processing Pipeline 793ec14706c41727637f5601bcb9206d https://www.encodeproject.org/files/ENCFF089OSZ/@@download/ENCFF089OSZ.bigBed GRCh38 released biological replicates with identical biosample missing control alignments ENCFF773HQL bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF507TFC 5707686 ENCODE Processing Pipeline 2a3a2019eede7c53e66c4238c481d5d1 https://www.encodeproject.org/files/ENCFF773HQL/@@download/ENCFF773HQL.bed.gz GRCh38 released biological replicates with identical biosample missing control alignments ENCFF696GTA bigWig fold change over control ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF507TFC 608322002 ENCODE Processing Pipeline 9c250329da895fcff35277604a29e3b1 https://www.encodeproject.org/files/ENCFF696GTA/@@download/ENCFF696GTA.bigWig GRCh38 released biological replicates with identical biosample missing control alignments ENCFF211DPV bigWig fold change over control ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF697VPH 820807405 ENCODE Processing Pipeline 59640e185607215d55379eaa99c74b23 https://www.encodeproject.org/files/ENCFF211DPV/@@download/ENCFF211DPV.bigWig GRCh38 released biological replicates with identical biosample missing control alignments ENCFF682AGQ bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF507TFC, ENCFF697VPH 6478149 ENCODE Processing Pipeline 45bbcdac723ee9e98678c872fec3716a https://www.encodeproject.org/files/ENCFF682AGQ/@@download/ENCFF682AGQ.bed.gz GRCh38 released biological replicates with identical biosample missing control alignments ENCFF120UGE bigWig signal p-value ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF507TFC, ENCFF697VPH 914311069 ENCODE Processing Pipeline ac8380d563d4409c63954b3a869deffb https://www.encodeproject.org/files/ENCFF120UGE/@@download/ENCFF120UGE.bigWig GRCh38 released biological replicates with identical biosample missing control alignments ENCFF008ACO bigWig fold change over control ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF507TFC, ENCFF697VPH 1121844115 ENCODE Processing Pipeline 31003e0a9896505619844bf35f97c10f https://www.encodeproject.org/files/ENCFF008ACO/@@download/ENCFF008ACO.bigWig GRCh38 released biological replicates with identical biosample missing control alignments ENCFF533YSW bigBed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF773HQL 11215652 ENCODE Processing Pipeline d5387bc125f504e562d68a9b37e5b0dd https://www.encodeproject.org/files/ENCFF533YSW/@@download/ENCFF533YSW.bigBed GRCh38 released biological replicates with identical biosample missing control alignments ENCFF030PVU bigBed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF682AGQ 13707578 ENCODE Processing Pipeline ed6e3e6ba06ee88d674ee3e692f2ec19 https://www.encodeproject.org/files/ENCFF030PVU/@@download/ENCFF030PVU.bigBed GRCh38 released biological replicates with identical biosample missing control alignments ENCFF627FTK bed narrowPeak conservative idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF314FHH, ENCFF419RSJ, ENCFF682AGQ, ENCFF773HQL 622111 ENCODE Processing Pipeline 0862a4b8eafbb88554c62561ea550ecf https://www.encodeproject.org/files/ENCFF627FTK/@@download/ENCFF627FTK.bed.gz GRCh38 released biological replicates with identical biosample missing control alignments ENCFF022MEO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF627FTK 1236623 ENCODE Processing Pipeline 5f2e339747ae2ab9a4c8530cc981aa36 https://www.encodeproject.org/files/ENCFF022MEO/@@download/ENCFF022MEO.bigBed GRCh38 released biological replicates with identical biosample missing control alignments ENCFF000BZG bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 1 1147790423 Bradley Bernstein, Broad 94a9db41c02a9dad39b3fc6104b78658 https://www.encodeproject.org/files/ENCFF000BZG/@@download/ENCFF000BZG.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF000BZH bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 1 803402462 Bradley Bernstein, Broad 150a73e331d59563816984922be767b2 https://www.encodeproject.org/files/ENCFF000BZH/@@download/ENCFF000BZH.bam hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF000BZI bigBed broadPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SZQ 4789350 Bradley Bernstein, Broad 6fcb3c8bda6a11180edee6f263f7b96b https://www.encodeproject.org/files/ENCFF000BZI/@@download/ENCFF000BZI.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000BZL bigWig signal ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 441384820 Bradley Bernstein, Broad 188b815ae7636ba567908fa251c84b5a https://www.encodeproject.org/files/ENCFF000BZL/@@download/ENCFF000BZL.bigWig hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF001SZQ bed broadPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 3260619 Bradley Bernstein, Broad 7cbe6c1860923d4839608fca47c08fe3 https://www.encodeproject.org/files/ENCFF001SZQ/@@download/ENCFF001SZQ.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF002CEO bed narrowPeak optimal idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 121425 ENCODE Consortium Analysis Working Group 636ef8b5c6f6f03df33fbf7456260d38 https://www.encodeproject.org/files/ENCFF002CEO/@@download/ENCFF002CEO.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from ENCFF010SXM bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CEO 293752 ENCODE Consortium 041872b566e7375ed41392dbf47d04e1 https://www.encodeproject.org/files/ENCFF010SXM/@@download/ENCFF010SXM.bigBed hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF315OYW fastq reads ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1234252642 Bradley Bernstein, Broad 30ade1732546961e3a4521805c81e00e https://www.encodeproject.org/files/ENCFF315OYW/@@download/ENCFF315OYW.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000BWK/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF583ZBF fastq reads ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 1258303345 Bradley Bernstein, Broad 9042470bd9f5e29c8e294ad76c758e23 https://www.encodeproject.org/files/ENCFF583ZBF/@@download/ENCFF583ZBF.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF283HQV/, /files/ENCFF994FIB/ released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF859DKS bam unfiltered alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF583ZBF, ENCFF643CGH 1539260970 ENCODE Processing Pipeline 9fbc0537d53b62b7eba118449196421d https://www.encodeproject.org/files/ENCFF859DKS/@@download/ENCFF859DKS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF118VIO bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF583ZBF, ENCFF807MUK 574117427 ENCODE Processing Pipeline 3a9b0b04c76516144f1a3c422e20d454 https://www.encodeproject.org/files/ENCFF118VIO/@@download/ENCFF118VIO.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF979MVK bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF315OYW, ENCFF807MUK 521117816 ENCODE Processing Pipeline 6e61a27da24ef3c8d229370974b8b465 https://www.encodeproject.org/files/ENCFF979MVK/@@download/ENCFF979MVK.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF388BJH bam unfiltered alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF315OYW, ENCFF807MUK 1583414622 ENCODE Processing Pipeline 3b69cffd145a81c6e432722c0b0ed20a https://www.encodeproject.org/files/ENCFF388BJH/@@download/ENCFF388BJH.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF480QNB bam unfiltered alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF583ZBF, ENCFF807MUK 1533988936 ENCODE Processing Pipeline 3dc65ef935030d56524d61b3412ae8e1 https://www.encodeproject.org/files/ENCFF480QNB/@@download/ENCFF480QNB.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF456VOS bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF583ZBF, ENCFF643CGH 573752081 ENCODE Processing Pipeline d7b4ddc9e2347d5e6103d62057696163 https://www.encodeproject.org/files/ENCFF456VOS/@@download/ENCFF456VOS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF205EFG bam unfiltered alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF315OYW, ENCFF643CGH 1590548420 ENCODE Processing Pipeline 50062d4f66ba275216a1d7f587d46fc2 https://www.encodeproject.org/files/ENCFF205EFG/@@download/ENCFF205EFG.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF610YXS bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF315OYW, ENCFF643CGH 520684007 ENCODE Processing Pipeline b0faa0dcce92e657108cc7e3e20ee0ed https://www.encodeproject.org/files/ENCFF610YXS/@@download/ENCFF610YXS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF964BMW bigWig signal p-value ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF610YXS 336955739 ENCODE Processing Pipeline 2b380c867e7e885a2f08e6cc58610dbc https://www.encodeproject.org/files/ENCFF964BMW/@@download/ENCFF964BMW.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF772KRP bigWig signal p-value ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF574XYY, ENCFF979MVK 387945221 ENCODE Processing Pipeline 6f1fa82ee5265d4d45b3c6b7e1e7b205 https://www.encodeproject.org/files/ENCFF772KRP/@@download/ENCFF772KRP.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF652HWU bigWig fold change over control ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF610YXS 230431305 ENCODE Processing Pipeline 11bb2279acdcc4205058beacdcdd7e95 https://www.encodeproject.org/files/ENCFF652HWU/@@download/ENCFF652HWU.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF480JCX bigWig fold change over control ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF574XYY, ENCFF979MVK 232153580 ENCODE Processing Pipeline a0e33a1e62b621efc911d9c976896b55 https://www.encodeproject.org/files/ENCFF480JCX/@@download/ENCFF480JCX.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF918YKH bigWig signal p-value ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF118VIO, ENCFF245PJA 304598455 ENCODE Processing Pipeline 1fc15696fb96b33e785516fa3b934409 https://www.encodeproject.org/files/ENCFF918YKH/@@download/ENCFF918YKH.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF417IVC bigWig signal p-value ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF456VOS, ENCFF829HZY 304329175 ENCODE Processing Pipeline b4f29bd79bcc59c1d91c1b04b9a5bdb9 https://www.encodeproject.org/files/ENCFF417IVC/@@download/ENCFF417IVC.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF950DNQ bigWig signal p-value ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF118VIO, ENCFF245PJA, ENCFF574XYY, ENCFF979MVK 677549613 ENCODE Processing Pipeline 5794fdcf0b16759880e796e98cf00f0a https://www.encodeproject.org/files/ENCFF950DNQ/@@download/ENCFF950DNQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF086GIP bigWig signal p-value ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF456VOS, ENCFF610YXS, ENCFF829HZY 624480352 ENCODE Processing Pipeline 9a6dca00e07fb3914f590733768b4c3a https://www.encodeproject.org/files/ENCFF086GIP/@@download/ENCFF086GIP.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF485YWM bigBed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF930KIS 10097851 ENCODE Processing Pipeline 40ab861e8f71b06c5490cecde9fda133 https://www.encodeproject.org/files/ENCFF485YWM/@@download/ENCFF485YWM.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF974TDS bigBed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF680CDC 13173152 ENCODE Processing Pipeline 41d54a75d6dc1caac3089b2f5d92a880 https://www.encodeproject.org/files/ENCFF974TDS/@@download/ENCFF974TDS.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF802ARP bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF713HRG 179715 ENCODE Processing Pipeline c79edfe472f4e24ce8e2a47a1b006b20 https://www.encodeproject.org/files/ENCFF802ARP/@@download/ENCFF802ARP.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF363GSV bed narrowPeak optimal idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF325JSZ, ENCFF419RSJ, ENCFF632FBG, ENCFF951IMJ 100086 ENCODE Processing Pipeline 67405073f47d435e55cd4f45c411b2d2 https://www.encodeproject.org/files/ENCFF363GSV/@@download/ENCFF363GSV.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF133DXG bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF363GSV 231031 ENCODE Processing Pipeline a0a91cd44bc36def95caba8bc36a6af8 https://www.encodeproject.org/files/ENCFF133DXG/@@download/ENCFF133DXG.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF095NWO bigBed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF233XEO 10231085 ENCODE Processing Pipeline 38d6b9be1e99072375047af1d72cbc14 https://www.encodeproject.org/files/ENCFF095NWO/@@download/ENCFF095NWO.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF178YJX bigWig fold change over control ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF118VIO, ENCFF245PJA 241439233 ENCODE Processing Pipeline 3102ed93d9920adaf5cd48bb4bf68f04 https://www.encodeproject.org/files/ENCFF178YJX/@@download/ENCFF178YJX.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF532SIS bigWig fold change over control ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF118VIO, ENCFF245PJA, ENCFF574XYY, ENCFF979MVK 518004071 ENCODE Processing Pipeline 5e6e92aef31d1d8c796d4cd080c734a0 https://www.encodeproject.org/files/ENCFF532SIS/@@download/ENCFF532SIS.bigWig hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF325JSZ bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF610YXS 4350637 ENCODE Processing Pipeline ff042d67bdb8fcafefa7e81bc4fd7125 https://www.encodeproject.org/files/ENCFF325JSZ/@@download/ENCFF325JSZ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF680CDC bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF118VIO, ENCFF245PJA, ENCFF574XYY, ENCFF979MVK 5850772 ENCODE Processing Pipeline a32dfdd5ef16afbcaeeebbaccb10f1f6 https://www.encodeproject.org/files/ENCFF680CDC/@@download/ENCFF680CDC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF448HKE bigBed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF325JSZ 10215076 ENCODE Processing Pipeline 73912bf076a6a2cce07888d4fa61f134 https://www.encodeproject.org/files/ENCFF448HKE/@@download/ENCFF448HKE.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF713HRG bed narrowPeak conservative idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF233XEO, ENCFF680CDC, ENCFF930KIS 68082 ENCODE Processing Pipeline 0477a7db4edd8a8b05d4b3754310d83a https://www.encodeproject.org/files/ENCFF713HRG/@@download/ENCFF713HRG.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF657VJX bed narrowPeak optimal idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF233XEO, ENCFF680CDC, ENCFF930KIS 93415 ENCODE Processing Pipeline e7464d52ba1f458c1b5e6a0c4a1cfecd https://www.encodeproject.org/files/ENCFF657VJX/@@download/ENCFF657VJX.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF716YLY bigWig fold change over control ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF456VOS, ENCFF829HZY 241181100 ENCODE Processing Pipeline a12308fcf162238e0002b2f2e36e6ed8 https://www.encodeproject.org/files/ENCFF716YLY/@@download/ENCFF716YLY.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF337NZT bigWig fold change over control ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF456VOS, ENCFF610YXS, ENCFF829HZY 519692941 ENCODE Processing Pipeline bbf5de150dbed91b10977b0d3e5516da https://www.encodeproject.org/files/ENCFF337NZT/@@download/ENCFF337NZT.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF951IMJ bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF456VOS, ENCFF829HZY 4119489 ENCODE Processing Pipeline 28289ab9ff8ea1fac55a2ffa34274695 https://www.encodeproject.org/files/ENCFF951IMJ/@@download/ENCFF951IMJ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF124TGZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF660FBQ 182640 ENCODE Processing Pipeline 832a9c3967a9a5d401667e17b68b6351 https://www.encodeproject.org/files/ENCFF124TGZ/@@download/ENCFF124TGZ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF233XEO bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF574XYY, ENCFF979MVK 4369803 ENCODE Processing Pipeline c93be7987719bacc0e44acae6a84097b https://www.encodeproject.org/files/ENCFF233XEO/@@download/ENCFF233XEO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF930KIS bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF118VIO, ENCFF245PJA 4151818 ENCODE Processing Pipeline fe651af8616d0ff1d7b529fa8ae545d9 https://www.encodeproject.org/files/ENCFF930KIS/@@download/ENCFF930KIS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF501SEG bigBed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF632FBG 13177729 ENCODE Processing Pipeline 1d3c1fa126c582020ff587c6de5117d3 https://www.encodeproject.org/files/ENCFF501SEG/@@download/ENCFF501SEG.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF660FBQ bed narrowPeak conservative idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF325JSZ, ENCFF419RSJ, ENCFF632FBG, ENCFF951IMJ 69329 ENCODE Processing Pipeline 05eed361f56bb6ec98026a3f57b05822 https://www.encodeproject.org/files/ENCFF660FBQ/@@download/ENCFF660FBQ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF384MAK bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF657VJX 220489 ENCODE Processing Pipeline 21b73b3c9518e9bd1721c05b62b43507 https://www.encodeproject.org/files/ENCFF384MAK/@@download/ENCFF384MAK.bigBed hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF632FBG bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF456VOS, ENCFF610YXS, ENCFF829HZY 5844670 ENCODE Processing Pipeline 1e42441c63dd7b2f207b59a107627b2a https://www.encodeproject.org/files/ENCFF632FBG/@@download/ENCFF632FBG.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF312HSR bigBed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF951IMJ 10081297 ENCODE Processing Pipeline 48b5b54d001454a8d36bcb66c0aa24dd https://www.encodeproject.org/files/ENCFF312HSR/@@download/ENCFF312HSR.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000XGS bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 1 ENCFF000XGV 654616934 Michael Snyder, Stanford 34af24ba038c5ed395461fe7673bc5a4 https://www.encodeproject.org/files/ENCFF000XGS/@@download/ENCFF000XGS.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000XGT bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 1 ENCFF000XGX 460061981 Michael Snyder, Stanford 84fa4452cbb9ffcf761dd52774a53c7e https://www.encodeproject.org/files/ENCFF000XGT/@@download/ENCFF000XGT.bam hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000XGU bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001VIR 2186503 Michael Snyder, Stanford 0498fdb8ec4e6e9a1665835a654e7db6 https://www.encodeproject.org/files/ENCFF000XGU/@@download/ENCFF000XGU.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000XGV fastq reads ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1294895296 Michael Snyder, Stanford a2a8eb7feeb30086b55857aadce3220a https://www.encodeproject.org/files/ENCFF000XGV/@@download/ENCFF000XGV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000XGX fastq reads ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 810623407 Michael Snyder, Stanford d12eee784379997541cebaea83044256 https://www.encodeproject.org/files/ENCFF000XGX/@@download/ENCFF000XGX.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, borderline replicate concordance, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000XGZ bigWig signal ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000XGS, ENCFF000XGT 413629488 Michael Snyder, Stanford b22be7e6d1026b8d57f27856ccf30edd https://www.encodeproject.org/files/ENCFF000XGZ/@@download/ENCFF000XGZ.bigWig hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF001VIR bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000XGS, ENCFF000XGT 988006 Michael Snyder, Stanford 4bc54fd891b99f2ea8980fb2e47b754d https://www.encodeproject.org/files/ENCFF001VIR/@@download/ENCFF001VIR.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF002CSQ bed narrowPeak optimal idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000XGS, ENCFF000XGT 365040 ENCODE Consortium Analysis Working Group 99d5d60d4701464dd198090fa82bf9e1 https://www.encodeproject.org/files/ENCFF002CSQ/@@download/ENCFF002CSQ.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF724ECR bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002CSQ 894799 ENCODE Consortium 6ee98a7d447e6cd5915cea9d5b8eaae3 https://www.encodeproject.org/files/ENCFF724ECR/@@download/ENCFF724ECR.bigBed hg19 archived low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF086SQL bam unfiltered alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XGX, ENCFF807MUK 942523591 ENCODE Processing Pipeline 6794b2bc55b803c3c1424800bab282d9 https://www.encodeproject.org/files/ENCFF086SQL/@@download/ENCFF086SQL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF405VXR bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XGV, ENCFF807MUK 1034457315 ENCODE Processing Pipeline 3658287952038415bbb2cc4a3c43e805 https://www.encodeproject.org/files/ENCFF405VXR/@@download/ENCFF405VXR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF909PSG bam unfiltered alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XGV, ENCFF807MUK 1468441574 ENCODE Processing Pipeline b1da23314a80fbf07ba5f3bbdccafe34 https://www.encodeproject.org/files/ENCFF909PSG/@@download/ENCFF909PSG.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF407WOE bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XGX, ENCFF807MUK 666608145 ENCODE Processing Pipeline e779ea7b22e79cfa78f5695d636d5574 https://www.encodeproject.org/files/ENCFF407WOE/@@download/ENCFF407WOE.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF330LPO bigWig signal p-value ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF405VXR, ENCFF407WOE, ENCFF469INX 610183408 ENCODE Processing Pipeline 9e557b186b68e4299e870d17950a7371 https://www.encodeproject.org/files/ENCFF330LPO/@@download/ENCFF330LPO.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF739HNF bigWig fold change over control ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF405VXR, ENCFF407WOE, ENCFF469INX 735419858 ENCODE Processing Pipeline 9416fd7a37e1d6c7b7e415a814467ad6 https://www.encodeproject.org/files/ENCFF739HNF/@@download/ENCFF739HNF.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF928GGW bigWig signal p-value ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF407WOE, ENCFF469INX 469291068 ENCODE Processing Pipeline cd311086afaf593ac2b71ae77413ff9e https://www.encodeproject.org/files/ENCFF928GGW/@@download/ENCFF928GGW.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF679EHK bigWig signal p-value ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF405VXR, ENCFF469INX 490027517 ENCODE Processing Pipeline 6f64951d6d943a27675613791b59b8ff https://www.encodeproject.org/files/ENCFF679EHK/@@download/ENCFF679EHK.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF743JCQ bigWig fold change over control ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF407WOE, ENCFF469INX 351373727 ENCODE Processing Pipeline 612b016f39d5a5cbcda4ce5418a77558 https://www.encodeproject.org/files/ENCFF743JCQ/@@download/ENCFF743JCQ.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF067MOE bigWig fold change over control ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF405VXR, ENCFF469INX 526591407 ENCODE Processing Pipeline 8211271bb33106e95b521ba6d758ea89 https://www.encodeproject.org/files/ENCFF067MOE/@@download/ENCFF067MOE.bigWig hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF796KTU bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF407WOE, ENCFF469INX 4669056 ENCODE Processing Pipeline b080662a3d8db6a185fd4615947e906f https://www.encodeproject.org/files/ENCFF796KTU/@@download/ENCFF796KTU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF405BKG bed narrowPeak optimal idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF123SPG, ENCFF742HOV, ENCFF796KTU 323459 ENCODE Processing Pipeline 883649f54d85c599af51713df8eb0cf7 https://www.encodeproject.org/files/ENCFF405BKG/@@download/ENCFF405BKG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF123SPG bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF405VXR, ENCFF469INX 5685175 ENCODE Processing Pipeline 8d86ae5c11dc6fe954a9bda697b56b7e https://www.encodeproject.org/files/ENCFF123SPG/@@download/ENCFF123SPG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF416IPZ bed narrowPeak conservative idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF123SPG, ENCFF742HOV, ENCFF796KTU 238122 ENCODE Processing Pipeline b6141db47891f3dcba8cdfc010241434 https://www.encodeproject.org/files/ENCFF416IPZ/@@download/ENCFF416IPZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF029QZR bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF405BKG 620767 ENCODE Processing Pipeline 1a4fe9357b9ac7b823a17b973725eeaf https://www.encodeproject.org/files/ENCFF029QZR/@@download/ENCFF029QZR.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF742HOV bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF405VXR, ENCFF407WOE, ENCFF469INX 6105099 ENCODE Processing Pipeline bfaf6f048461d6b69c7d6f9c8b7ee099 https://www.encodeproject.org/files/ENCFF742HOV/@@download/ENCFF742HOV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF285KTD bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF123SPG 11463204 ENCODE Processing Pipeline 3f80205cd832e1bb6bffb12b0fdae953 https://www.encodeproject.org/files/ENCFF285KTD/@@download/ENCFF285KTD.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF921ECQ bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF742HOV 13636647 ENCODE Processing Pipeline 4e06003e20c542fe1bc395e1b31a610d https://www.encodeproject.org/files/ENCFF921ECQ/@@download/ENCFF921ECQ.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF587DWX bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF796KTU 10979579 ENCODE Processing Pipeline 19b83e7926eb44df86eb1f67a4ac6e56 https://www.encodeproject.org/files/ENCFF587DWX/@@download/ENCFF587DWX.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF762XJO bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF416IPZ 496781 ENCODE Processing Pipeline affbfef75ac19b047b8a314ed20b87d9 https://www.encodeproject.org/files/ENCFF762XJO/@@download/ENCFF762XJO.bigBed hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF322ANK bam unfiltered alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XGX, ENCFF643CGH 946948942 ENCODE Processing Pipeline 0a4c448bfb1380b1c0f29dd50c7ebc3c https://www.encodeproject.org/files/ENCFF322ANK/@@download/ENCFF322ANK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF982EYL bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XGX, ENCFF643CGH 666216818 ENCODE Processing Pipeline 49c898ebfcb6b4221f741bd2a757e4e9 https://www.encodeproject.org/files/ENCFF982EYL/@@download/ENCFF982EYL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF686AFM bam unfiltered alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XGV, ENCFF643CGH 1475366405 ENCODE Processing Pipeline acca670315978c67f785a096c8de6b19 https://www.encodeproject.org/files/ENCFF686AFM/@@download/ENCFF686AFM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF311TXI bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XGV, ENCFF643CGH 1033866310 ENCODE Processing Pipeline c56844ca7bd7b3ae9ba3859292ec4326 https://www.encodeproject.org/files/ENCFF311TXI/@@download/ENCFF311TXI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF288DQN bam unfiltered alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000XGX, ENCFF643CGH 828066818 ENCODE Processing Pipeline 7337a70a2ce0572f68351acffabcfdd1 https://www.encodeproject.org/files/ENCFF288DQN/@@download/ENCFF288DQN.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF980RDW bam unfiltered alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000XGV, ENCFF643CGH 1295154885 ENCODE Processing Pipeline 8eefc88324b83dae426a06f9c54ec82f https://www.encodeproject.org/files/ENCFF980RDW/@@download/ENCFF980RDW.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF161SWW bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000XGV, ENCFF643CGH 824773721 ENCODE Processing Pipeline ba1fdeaeaffdddafe13287b84f6bfaa2 https://www.encodeproject.org/files/ENCFF161SWW/@@download/ENCFF161SWW.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF490YHN bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000XGX, ENCFF643CGH 526008927 ENCODE Processing Pipeline ba326c0f1506e5b09c4de3bb6316d634 https://www.encodeproject.org/files/ENCFF490YHN/@@download/ENCFF490YHN.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF065SON bigWig signal p-value ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF161SWW, ENCFF436WVQ 537707807 ENCODE Processing Pipeline 1274d23b83f7f86bcd6cef74233ff47d https://www.encodeproject.org/files/ENCFF065SON/@@download/ENCFF065SON.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF214FYH bigWig signal p-value ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF436WVQ, ENCFF490YHN 469737599 ENCODE Processing Pipeline cdc0adac795242c6ed12d2bf8ed39ffe https://www.encodeproject.org/files/ENCFF214FYH/@@download/ENCFF214FYH.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF208BXU bigWig signal p-value ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF161SWW, ENCFF436WVQ, ENCFF490YHN 631813327 ENCODE Processing Pipeline 17da74f78a4ac80843c859dc5649a259 https://www.encodeproject.org/files/ENCFF208BXU/@@download/ENCFF208BXU.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF587UOL bigWig fold change over control ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF436WVQ, ENCFF490YHN 331446354 ENCODE Processing Pipeline 41799c2f3db1faeb15e4d2fb346e96b6 https://www.encodeproject.org/files/ENCFF587UOL/@@download/ENCFF587UOL.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF401GZC bigWig fold change over control ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF161SWW, ENCFF436WVQ 483812921 ENCODE Processing Pipeline d4f2952a59ae70bdbbc12f6c8059a378 https://www.encodeproject.org/files/ENCFF401GZC/@@download/ENCFF401GZC.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF254FTP bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF436WVQ, ENCFF490YHN 4573042 ENCODE Processing Pipeline 2b46ff26299ae4c1b8b10c8b4f334d55 https://www.encodeproject.org/files/ENCFF254FTP/@@download/ENCFF254FTP.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF083NFC bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF982XOA 11339149 ENCODE Processing Pipeline 9b95bf844c66d64e0cde354d078274a5 https://www.encodeproject.org/files/ENCFF083NFC/@@download/ENCFF083NFC.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF949NBY bigWig fold change over control ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF161SWW, ENCFF436WVQ, ENCFF490YHN 703374452 ENCODE Processing Pipeline cc264d2037bab712d8c1cf0b88cf5a4b https://www.encodeproject.org/files/ENCFF949NBY/@@download/ENCFF949NBY.bigWig GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF982XOA bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF161SWW, ENCFF436WVQ 5490499 ENCODE Processing Pipeline 323b8eed8b32ce2e3182d4ab1cb27c18 https://www.encodeproject.org/files/ENCFF982XOA/@@download/ENCFF982XOA.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF328BUR bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF161SWW, ENCFF436WVQ, ENCFF490YHN 3776170 ENCODE Processing Pipeline e7c8db7597bce962814052a6f925e1a9 https://www.encodeproject.org/files/ENCFF328BUR/@@download/ENCFF328BUR.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF994SFB bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF254FTP 10746408 ENCODE Processing Pipeline 34285b6b9aa2ac7ac71e22befed4f6c6 https://www.encodeproject.org/files/ENCFF994SFB/@@download/ENCFF994SFB.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF314ZCZ bed narrowPeak conservative idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF254FTP, ENCFF328BUR, ENCFF419RSJ, ENCFF982XOA 218796 ENCODE Processing Pipeline 896363a4b71db88dfd9cb40dc38eb22b https://www.encodeproject.org/files/ENCFF314ZCZ/@@download/ENCFF314ZCZ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF535EJU bigBed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF328BUR 8434990 ENCODE Processing Pipeline a9d5069e731d4d4c30b6a6ec7ad46041 https://www.encodeproject.org/files/ENCFF535EJU/@@download/ENCFF535EJU.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF328IZQ bed narrowPeak optimal idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF254FTP, ENCFF328BUR, ENCFF419RSJ, ENCFF982XOA 303947 ENCODE Processing Pipeline 4ba8266a01518d9342c74cf2b8c05407 https://www.encodeproject.org/files/ENCFF328IZQ/@@download/ENCFF328IZQ.bed.gz GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF143KQP bigBed narrowPeak conservative idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF314ZCZ 467438 ENCODE Processing Pipeline b374cf6b8ef17855744c54ede78fb33f https://www.encodeproject.org/files/ENCFF143KQP/@@download/ENCFF143KQP.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF396OTQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF328IZQ 591112 ENCODE Processing Pipeline d47d07fe9260203266393cf99a054216 https://www.encodeproject.org/files/ENCFF396OTQ/@@download/ENCFF396OTQ.bigBed GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF000ANB bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF000ANM 821341456 Bradley Bernstein, Broad a5a06b1098e851327c0a26cab63596a8 https://www.encodeproject.org/files/ENCFF000ANB/@@download/ENCFF000ANB.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF000ANA bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000ANN 1275861291 Bradley Bernstein, Broad ea75385e3ab61199fad72821fd52c767 https://www.encodeproject.org/files/ENCFF000ANA/@@download/ENCFF000ANA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF000ANC bigBed broadPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE ENCFF001STL 390001 Bradley Bernstein, Broad fbae117bfcba5bb237a6b503887fc5d4 https://www.encodeproject.org/files/ENCFF000ANC/@@download/ENCFF000ANC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF000ANF bigWig signal ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 432190955 Bradley Bernstein, Broad a3457a6ccff0ced1372c98e4f1258387 https://www.encodeproject.org/files/ENCFF000ANF/@@download/ENCFF000ANF.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF000ANM fastq reads ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 1010372332 Bradley Bernstein, Broad 869156e90786cd775f2ae7ab56e76457 https://www.encodeproject.org/files/ENCFF000ANM/@@download/ENCFF000ANM.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AMM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF000ANN fastq reads ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1293228198 Bradley Bernstein, Broad 246c03eda4f38610dee0b24b7040ee58 https://www.encodeproject.org/files/ENCFF000ANN/@@download/ENCFF000ANN.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AMM/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF001STL bed broadPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 219964 Bradley Bernstein, Broad c4e8b88da85913662eeafc36485e1bd6 https://www.encodeproject.org/files/ENCFF001STL/@@download/ENCFF001STL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF726NQZ bam unfiltered alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000ANM, ENCFF643CGH 1203001170 ENCODE Processing Pipeline 07855860e2a1a5b4a39257ac1204531a https://www.encodeproject.org/files/ENCFF726NQZ/@@download/ENCFF726NQZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF563GAI bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000ANM, ENCFF643CGH 204294354 ENCODE Processing Pipeline 26a6ec957e3d80b47ecfa76ce5f7381b https://www.encodeproject.org/files/ENCFF563GAI/@@download/ENCFF563GAI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF705OOX bam unfiltered alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000ANN, ENCFF643CGH 1615301576 ENCODE Processing Pipeline 95f2ab257d1a3c656ad1db69738a8321 https://www.encodeproject.org/files/ENCFF705OOX/@@download/ENCFF705OOX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF301OCC bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000ANN, ENCFF643CGH 790575207 ENCODE Processing Pipeline 0e02f0a73440a47d5e3a00c1a754865f https://www.encodeproject.org/files/ENCFF301OCC/@@download/ENCFF301OCC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF728RIE bam unfiltered alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000ANM, ENCFF807MUK 1196766728 ENCODE Processing Pipeline aa8ae39a51599ed3318e9d8036cf7cb0 https://www.encodeproject.org/files/ENCFF728RIE/@@download/ENCFF728RIE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF009VFJ bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000ANM, ENCFF807MUK 204453645 ENCODE Processing Pipeline 00bac761fe4c5d1385da10dfd7d1dde7 https://www.encodeproject.org/files/ENCFF009VFJ/@@download/ENCFF009VFJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF201QIE bam unfiltered alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000ANN, ENCFF807MUK 1604349666 ENCODE Processing Pipeline c74d9949822880a40fec4072432b0a43 https://www.encodeproject.org/files/ENCFF201QIE/@@download/ENCFF201QIE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF724KQS bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000ANN, ENCFF807MUK 790809493 ENCODE Processing Pipeline 6dda31fc7f60bc37e7e32b8531c21278 https://www.encodeproject.org/files/ENCFF724KQS/@@download/ENCFF724KQS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF335MKB bigWig signal p-value ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF301OCC, ENCFF563GAI, ENCFF849QON 594827890 ENCODE Processing Pipeline cae7cc9b09d963daa48f709437ecfef1 https://www.encodeproject.org/files/ENCFF335MKB/@@download/ENCFF335MKB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF314FOQ bigWig fold change over control ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF301OCC, ENCFF849QON 519870342 ENCODE Processing Pipeline 789d35932e902dcfd608002732fad95c https://www.encodeproject.org/files/ENCFF314FOQ/@@download/ENCFF314FOQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF649APJ bigWig fold change over control ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF563GAI, ENCFF849QON 158481229 ENCODE Processing Pipeline 7f13327399e9094bb3f02e036e688875 https://www.encodeproject.org/files/ENCFF649APJ/@@download/ENCFF649APJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF052YUW bigWig fold change over control ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF301OCC, ENCFF563GAI, ENCFF849QON 609053281 ENCODE Processing Pipeline 56d822518b8e0c900e459019e065b2c7 https://www.encodeproject.org/files/ENCFF052YUW/@@download/ENCFF052YUW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF239SQD bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF301OCC, ENCFF849QON 5168205 ENCODE Processing Pipeline 467120689d8640fc120beefd44830e6c https://www.encodeproject.org/files/ENCFF239SQD/@@download/ENCFF239SQD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF907RKX bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF563GAI, ENCFF849QON 1562821 ENCODE Processing Pipeline d926c3e6e86212f9189614bab7b5a208 https://www.encodeproject.org/files/ENCFF907RKX/@@download/ENCFF907RKX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF234EJD bigWig signal p-value ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF301OCC, ENCFF849QON 583319493 ENCODE Processing Pipeline 434261b0904d0c34535ff8cf5177bd84 https://www.encodeproject.org/files/ENCFF234EJD/@@download/ENCFF234EJD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF079QBJ bigWig signal p-value ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF563GAI, ENCFF849QON 407899879 ENCODE Processing Pipeline 173baa5e7575b4e2710756db276e9e00 https://www.encodeproject.org/files/ENCFF079QBJ/@@download/ENCFF079QBJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF465CTL bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF301OCC, ENCFF563GAI, ENCFF849QON 5281162 ENCODE Processing Pipeline 6477c27431d1ba989422dd710d2a159f https://www.encodeproject.org/files/ENCFF465CTL/@@download/ENCFF465CTL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF606SWN bigBed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF907RKX 3441479 ENCODE Processing Pipeline 6b8030c2248c18b8ddf89a8c14ef9547 https://www.encodeproject.org/files/ENCFF606SWN/@@download/ENCFF606SWN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF375NVU bigBed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF465CTL 13404641 ENCODE Processing Pipeline ae712ed527b76205d2f2378fb23e0c25 https://www.encodeproject.org/files/ENCFF375NVU/@@download/ENCFF375NVU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF434OEY bed narrowPeak optimal idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF239SQD, ENCFF419RSJ, ENCFF465CTL, ENCFF907RKX 54583 ENCODE Processing Pipeline c2176aa5397ddd59886252f15f7e588b https://www.encodeproject.org/files/ENCFF434OEY/@@download/ENCFF434OEY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF463JXZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF741FOY 155478 ENCODE Processing Pipeline 3a9f1a14ba1d1fafc56c85ad1350eee0 https://www.encodeproject.org/files/ENCFF463JXZ/@@download/ENCFF463JXZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF663YAC bigBed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF239SQD 13427759 ENCODE Processing Pipeline 11411e729c23e009b710d0c524331bbe https://www.encodeproject.org/files/ENCFF663YAC/@@download/ENCFF663YAC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF741FOY bed narrowPeak conservative idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF239SQD, ENCFF419RSJ, ENCFF465CTL, ENCFF907RKX 28871 ENCODE Processing Pipeline 38dc6f4709109e6164bf41c999a23cc6 https://www.encodeproject.org/files/ENCFF741FOY/@@download/ENCFF741FOY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF161HRO bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF434OEY 219581 ENCODE Processing Pipeline afe77adb43ca90ff25295b8ba59601bb https://www.encodeproject.org/files/ENCFF161HRO/@@download/ENCFF161HRO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF516PTT bigWig fold change over control ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF009VFJ, ENCFF248YTS, ENCFF724KQS 607052239 ENCODE Processing Pipeline 60bf3965457cd16a57a39232d196fe93 https://www.encodeproject.org/files/ENCFF516PTT/@@download/ENCFF516PTT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF633UFX bigWig signal p-value ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF009VFJ, ENCFF248YTS, ENCFF724KQS 639997019 ENCODE Processing Pipeline 62619e953bc599a468a4657ee044fd5a https://www.encodeproject.org/files/ENCFF633UFX/@@download/ENCFF633UFX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF755RMC bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF009VFJ, ENCFF248YTS, ENCFF724KQS 5336411 ENCODE Processing Pipeline 8f39efdd1566e50a9915dc0a3ef7a999 https://www.encodeproject.org/files/ENCFF755RMC/@@download/ENCFF755RMC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF086SNU bigBed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF814VNW 3457404 ENCODE Processing Pipeline deab2ad368ea2eb304b6660e413efbf8 https://www.encodeproject.org/files/ENCFF086SNU/@@download/ENCFF086SNU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF606HVZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF072WAS 158030 ENCODE Processing Pipeline 1fb96af6c87f2dbf1211f218ee8e4c5d https://www.encodeproject.org/files/ENCFF606HVZ/@@download/ENCFF606HVZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF880XVY bigWig signal p-value ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF009VFJ, ENCFF248YTS 451625960 ENCODE Processing Pipeline fc9b38cdc2bc8da2a24a0a2bdf650c60 https://www.encodeproject.org/files/ENCFF880XVY/@@download/ENCFF880XVY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF135OZM bigWig fold change over control ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF009VFJ, ENCFF248YTS 153463218 ENCODE Processing Pipeline 6416647fbe1459d639bfe6b855540e7b https://www.encodeproject.org/files/ENCFF135OZM/@@download/ENCFF135OZM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF636MJV bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF126CZP 211509 ENCODE Processing Pipeline abf572e8a0e90a5030ac4c0e80dc1684 https://www.encodeproject.org/files/ENCFF636MJV/@@download/ENCFF636MJV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF160USY bigWig signal p-value ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF724KQS 560603789 ENCODE Processing Pipeline 65a920b0f62e0b9119dde4dea7505b1d https://www.encodeproject.org/files/ENCFF160USY/@@download/ENCFF160USY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF426BXF bigWig fold change over control ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF724KQS 528885762 ENCODE Processing Pipeline 3ffcd2dad3d2c1f17614a43e2acfaeff https://www.encodeproject.org/files/ENCFF426BXF/@@download/ENCFF426BXF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF814VNW bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF009VFJ, ENCFF248YTS 1629332 ENCODE Processing Pipeline d2859de620b6640f75ada3e783f2f069 https://www.encodeproject.org/files/ENCFF814VNW/@@download/ENCFF814VNW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF072WAS bed narrowPeak conservative idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF499CWW, ENCFF755RMC, ENCFF814VNW 30403 ENCODE Processing Pipeline bd5a53d515c50c791e4f023fff419b58 https://www.encodeproject.org/files/ENCFF072WAS/@@download/ENCFF072WAS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF499CWW bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF724KQS 5207894 ENCODE Processing Pipeline b923450f64e0d248502de4512fd8b528 https://www.encodeproject.org/files/ENCFF499CWW/@@download/ENCFF499CWW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF250QMH bigBed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF499CWW 13416713 ENCODE Processing Pipeline 9104cbe38a5f85b6077c0dd81a8518c7 https://www.encodeproject.org/files/ENCFF250QMH/@@download/ENCFF250QMH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF962YAI bigBed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF755RMC 13392657 ENCODE Processing Pipeline 25d33cfafbb6c4bad9d45f66723b207c https://www.encodeproject.org/files/ENCFF962YAI/@@download/ENCFF962YAI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF126CZP bed narrowPeak optimal idr thresholded peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF499CWW, ENCFF755RMC, ENCFF814VNW 52060 ENCODE Processing Pipeline 225d1f6f7e7aff79d4fd72818320f140 https://www.encodeproject.org/files/ENCFF126CZP/@@download/ENCFF126CZP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF000PUG bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PUS 1228709893 Richard Myers, HAIB f8463c39ec480fb7c7cc9497449048a0 https://www.encodeproject.org/files/ENCFF000PUG/@@download/ENCFF000PUG.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PUH bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PUT 1045269630 Richard Myers, HAIB 6b39ec08a1194ffac2990b677155bf87 https://www.encodeproject.org/files/ENCFF000PUH/@@download/ENCFF000PUH.bam hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PUK bigBed broadPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UIQ 1405424 Richard Myers, HAIB 8c0056d957f5b2e5dd0a693ab217555b https://www.encodeproject.org/files/ENCFF000PUK/@@download/ENCFF000PUK.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PUL bigBed broadPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UIR 661955 Richard Myers, HAIB d711170990b4844eb483658eb5adad4c https://www.encodeproject.org/files/ENCFF000PUL/@@download/ENCFF000PUL.bigBed hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PUM bigWig raw signal ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 1 136681250 Richard Myers, HAIB f95f6a3b18e54c1703a222a62f607ea8 https://www.encodeproject.org/files/ENCFF000PUM/@@download/ENCFF000PUM.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PUN bigWig raw signal ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 1 121450927 Richard Myers, HAIB 65092efd54acf1e3efb4e057666c0137 https://www.encodeproject.org/files/ENCFF000PUN/@@download/ENCFF000PUN.bigWig hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF000PUS fastq reads ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1338797999 Richard Myers, HAIB b05d0a450f25b8d09ad612f03d1fd199 https://www.encodeproject.org/files/ENCFF000PUS/@@download/ENCFF000PUS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVC/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PUT fastq reads ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1067328378 Richard Myers, HAIB 5093634d79a60dceb793f97f779ec3ea https://www.encodeproject.org/files/ENCFF000PUT/@@download/ENCFF000PUT.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PVZ/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF001UIQ bed broadPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 1 1037954 Richard Myers, HAIB 8bc179500074f2471e742e093c18fe54 https://www.encodeproject.org/files/ENCFF001UIQ/@@download/ENCFF001UIQ.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UIR bed broadPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 1 350910 Richard Myers, HAIB 832f96b2ca906cc4ff1d91a4a96f16e5 https://www.encodeproject.org/files/ENCFF001UIR/@@download/ENCFF001UIR.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth missing derived_from, biological replicates with identical biosample ENCFF155RGC bam unfiltered alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUT, ENCFF643CGH 1128568102 ENCODE Processing Pipeline 36286393958aa0b7670701a7485331dd https://www.encodeproject.org/files/ENCFF155RGC/@@download/ENCFF155RGC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF599RTB bam unfiltered alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUS, ENCFF643CGH 1307520905 ENCODE Processing Pipeline 108f6145895e5763a66506b297bb4842 https://www.encodeproject.org/files/ENCFF599RTB/@@download/ENCFF599RTB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF292UNW bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUT, ENCFF643CGH 818624080 ENCODE Processing Pipeline e5c7de678db2c1362378553401d69c31 https://www.encodeproject.org/files/ENCFF292UNW/@@download/ENCFF292UNW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF031PGD bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUS, ENCFF643CGH 882275737 ENCODE Processing Pipeline 5675b3c647c49ba696912f2f221b12c7 https://www.encodeproject.org/files/ENCFF031PGD/@@download/ENCFF031PGD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF436BMH bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUT, ENCFF807MUK 818890100 ENCODE Processing Pipeline 90e09de432ddb79ba3e0d5e9356b0bbd https://www.encodeproject.org/files/ENCFF436BMH/@@download/ENCFF436BMH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF112SLR bam unfiltered alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUT, ENCFF807MUK 1124353988 ENCODE Processing Pipeline ccc2daf1810c4f1d8851a2eed67e6492 https://www.encodeproject.org/files/ENCFF112SLR/@@download/ENCFF112SLR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF822WIL bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUS, ENCFF807MUK 882620732 ENCODE Processing Pipeline 1bc9751958ee737c0542b0999c461627 https://www.encodeproject.org/files/ENCFF822WIL/@@download/ENCFF822WIL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF472GBS bam unfiltered alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUS, ENCFF807MUK 1305109269 ENCODE Processing Pipeline 5b359ce80cb0ba58ce542e58aca03844 https://www.encodeproject.org/files/ENCFF472GBS/@@download/ENCFF472GBS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF108LDX bigWig signal p-value ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF407WPP, ENCFF822WIL, ENCFF880DIZ 547032298 ENCODE Processing Pipeline 53d5a9780f510ca179ae235d8f369a94 https://www.encodeproject.org/files/ENCFF108LDX/@@download/ENCFF108LDX.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF360RRD bigWig fold change over control ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF407WPP, ENCFF822WIL, ENCFF880DIZ 392326962 ENCODE Processing Pipeline b2d92d6374779f5c6906215c8d8b4873 https://www.encodeproject.org/files/ENCFF360RRD/@@download/ENCFF360RRD.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF488HSO bigWig signal p-value ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF407WPP, ENCFF436BMH, ENCFF880DIZ 582969782 ENCODE Processing Pipeline 9955f30079e83eccdc76702f4171bc1d https://www.encodeproject.org/files/ENCFF488HSO/@@download/ENCFF488HSO.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF857PRW bigWig fold change over control ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF407WPP, ENCFF436BMH, ENCFF880DIZ 353527997 ENCODE Processing Pipeline 8217b357db56059e593e7f41f290a482 https://www.encodeproject.org/files/ENCFF857PRW/@@download/ENCFF857PRW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF306ETS bigWig fold change over control ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF407WPP, ENCFF436BMH, ENCFF822WIL, ENCFF880DIZ 661578767 ENCODE Processing Pipeline b48b863c079179b94adc7f618d22a39c https://www.encodeproject.org/files/ENCFF306ETS/@@download/ENCFF306ETS.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF333IHO bigWig fold change over control ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF292UNW, ENCFF414MKM, ENCFF895MWF 362450397 ENCODE Processing Pipeline 49e3f3886c32567aad5101d9621003e2 https://www.encodeproject.org/files/ENCFF333IHO/@@download/ENCFF333IHO.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF841EZP bigBed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF129BKD 11847249 ENCODE Processing Pipeline 80e6412393ef94d7c4ed6fd1837c3e9e https://www.encodeproject.org/files/ENCFF841EZP/@@download/ENCFF841EZP.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF046GZZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF797QGP 1715107 ENCODE Processing Pipeline 732bd2b4902e2b045320f9c065074037 https://www.encodeproject.org/files/ENCFF046GZZ/@@download/ENCFF046GZZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF681HCY bigWig signal p-value ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF407WPP, ENCFF436BMH, ENCFF822WIL, ENCFF880DIZ 718237905 ENCODE Processing Pipeline efc3c44bd957d43c9ebdf279c0582cab https://www.encodeproject.org/files/ENCFF681HCY/@@download/ENCFF681HCY.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF446FKN bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF407WPP, ENCFF436BMH, ENCFF880DIZ 4259610 ENCODE Processing Pipeline 35279264f3e0ab7e73c32584f3fdb451 https://www.encodeproject.org/files/ENCFF446FKN/@@download/ENCFF446FKN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF214RQX bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF407WPP, ENCFF436BMH, ENCFF822WIL, ENCFF880DIZ 6015013 ENCODE Processing Pipeline 394b538601a76152df16e47a7ec1c156 https://www.encodeproject.org/files/ENCFF214RQX/@@download/ENCFF214RQX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF935IFD bigWig signal p-value ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF031PGD, ENCFF292UNW, ENCFF414MKM, ENCFF895MWF 709897593 ENCODE Processing Pipeline 1e23f364263dd959701f766c9ea15195 https://www.encodeproject.org/files/ENCFF935IFD/@@download/ENCFF935IFD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF113GYB bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF292UNW, ENCFF414MKM, ENCFF895MWF 4221477 ENCODE Processing Pipeline ee127509dc07325a7d1aa4fd3c9657c8 https://www.encodeproject.org/files/ENCFF113GYB/@@download/ENCFF113GYB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF567RGM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF587OBC 1672644 ENCODE Processing Pipeline 2175bcd633e8bea66ad5de3c26887648 https://www.encodeproject.org/files/ENCFF567RGM/@@download/ENCFF567RGM.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF129BKD bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF031PGD, ENCFF292UNW, ENCFF414MKM, ENCFF895MWF 6072652 ENCODE Processing Pipeline 8426cf391b963e2eb7ff5cfd538889ee https://www.encodeproject.org/files/ENCFF129BKD/@@download/ENCFF129BKD.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF163CDC bigBed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF113GYB 8609320 ENCODE Processing Pipeline dbf457cff00e32a42f9543d74312d9ef https://www.encodeproject.org/files/ENCFF163CDC/@@download/ENCFF163CDC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF707EYZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF506PIV 1234730 ENCODE Processing Pipeline 1b8051e306b2d3e3f925db94d71ea45c https://www.encodeproject.org/files/ENCFF707EYZ/@@download/ENCFF707EYZ.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF797QGP bed narrowPeak optimal idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF030HUB, ENCFF113GYB, ENCFF129BKD, ENCFF419RSJ 1060794 ENCODE Processing Pipeline a7f6b6029d8b4d63e84cc256cea4ac1a https://www.encodeproject.org/files/ENCFF797QGP/@@download/ENCFF797QGP.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF670PLH bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF407WPP, ENCFF822WIL, ENCFF880DIZ 5580846 ENCODE Processing Pipeline 808c31c7fb40747e64618122e7ca6bbc https://www.encodeproject.org/files/ENCFF670PLH/@@download/ENCFF670PLH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF655YEK bigBed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF446FKN 8651950 ENCODE Processing Pipeline bf070b7dd63523566fe6cb896f51491f https://www.encodeproject.org/files/ENCFF655YEK/@@download/ENCFF655YEK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF037MFL bed narrowPeak conservative idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF214RQX, ENCFF446FKN, ENCFF670PLH 668411 ENCODE Processing Pipeline f22f01bb8fa69d1841a233169f2f8af6 https://www.encodeproject.org/files/ENCFF037MFL/@@download/ENCFF037MFL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF587OBC bed narrowPeak optimal idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF214RQX, ENCFF446FKN, ENCFF670PLH 1034005 ENCODE Processing Pipeline cba9d4271e9a0b4f2f4e5cdbdb04fa29 https://www.encodeproject.org/files/ENCFF587OBC/@@download/ENCFF587OBC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF784SGM bigWig signal p-value ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF292UNW, ENCFF414MKM, ENCFF895MWF 582854385 ENCODE Processing Pipeline 74c24fd5660aa20552b188a706541317 https://www.encodeproject.org/files/ENCFF784SGM/@@download/ENCFF784SGM.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF973NJP bigWig fold change over control ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF031PGD, ENCFF292UNW, ENCFF414MKM, ENCFF895MWF 664450696 ENCODE Processing Pipeline 2ad746a0aa546b844360053b2e5c1b53 https://www.encodeproject.org/files/ENCFF973NJP/@@download/ENCFF973NJP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF506PIV bed narrowPeak conservative idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF030HUB, ENCFF113GYB, ENCFF129BKD, ENCFF419RSJ 686572 ENCODE Processing Pipeline 598ac703f28df09cbe537ca068f7333b https://www.encodeproject.org/files/ENCFF506PIV/@@download/ENCFF506PIV.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF523ZRL bigBed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF670PLH 11358113 ENCODE Processing Pipeline 877c51d6a97bc9415c517758dfd2b744 https://www.encodeproject.org/files/ENCFF523ZRL/@@download/ENCFF523ZRL.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF948FSD bigBed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF214RQX 11766142 ENCODE Processing Pipeline 7e9592384c35030122fdf1ccc20c2984 https://www.encodeproject.org/files/ENCFF948FSD/@@download/ENCFF948FSD.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF963KJK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF037MFL 1204035 ENCODE Processing Pipeline 0bfe687b156a3f3a47770c9b705aa8e6 https://www.encodeproject.org/files/ENCFF963KJK/@@download/ENCFF963KJK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF741OCP bigWig signal p-value ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF031PGD, ENCFF414MKM, ENCFF895MWF 541533042 ENCODE Processing Pipeline 95f095281ff37b76bbf7df99652009fb https://www.encodeproject.org/files/ENCFF741OCP/@@download/ENCFF741OCP.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF530EOD bigWig fold change over control ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF031PGD, ENCFF414MKM, ENCFF895MWF 395883661 ENCODE Processing Pipeline c7f62538e4e5385c5269e4a495436413 https://www.encodeproject.org/files/ENCFF530EOD/@@download/ENCFF530EOD.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF030HUB bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF031PGD, ENCFF414MKM, ENCFF895MWF 5577493 ENCODE Processing Pipeline dcca5c2927a9dda6319d0db72cef1622 https://www.encodeproject.org/files/ENCFF030HUB/@@download/ENCFF030HUB.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF740VAC bigBed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF030HUB 11360223 ENCODE Processing Pipeline 97d99392ceb911f07131ff5d92579e50 https://www.encodeproject.org/files/ENCFF740VAC/@@download/ENCFF740VAC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PKL bigBed broadPeak peaks ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UGM 332950 Richard Myers, HAIB c423cbc62ce39c6676d763a90fb8791c https://www.encodeproject.org/files/ENCFF000PKL/@@download/ENCFF000PKL.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PKM bigBed broadPeak peaks ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UGN 396591 Richard Myers, HAIB 208c603b15402062bb5fcc9b81ddc397 https://www.encodeproject.org/files/ENCFF000PKM/@@download/ENCFF000PKM.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PKN bam alignments ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PKX 1496665096 Richard Myers, HAIB 8f081b035f302eba2925c86b26501dd4 https://www.encodeproject.org/files/ENCFF000PKN/@@download/ENCFF000PKN.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PKO bam alignments ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PKZ 1886309353 Richard Myers, HAIB 66c8d6d95c4ef96af442b5f1c46acdaa https://www.encodeproject.org/files/ENCFF000PKO/@@download/ENCFF000PKO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PKP bigWig raw signal ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 206581113 Richard Myers, HAIB 6e226fd6986f3fb01e56da7bb14a9af0 https://www.encodeproject.org/files/ENCFF000PKP/@@download/ENCFF000PKP.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PKQ bigWig raw signal ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 242739146 Richard Myers, HAIB 07f982d277732f625a54431f676d4fa1 https://www.encodeproject.org/files/ENCFF000PKQ/@@download/ENCFF000PKQ.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PKX fastq reads ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1597964057 Richard Myers, HAIB 94c7efaeb0e98548eb1aa77599e9ddc9 https://www.encodeproject.org/files/ENCFF000PKX/@@download/ENCFF000PKX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPF/ released inconsistent platforms biological replicates with identical biosample ENCFF000PKZ fastq reads ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1979042488 Richard Myers, HAIB d161ab1d2caa2e4b31b9ece6a753ed6b https://www.encodeproject.org/files/ENCFF000PKZ/@@download/ENCFF000PKZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPI/ released inconsistent platforms biological replicates with identical biosample ENCFF001UGM bed broadPeak peaks ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 1 198357 Richard Myers, HAIB 2e1d2cc740b8ed764e3cf95880b921af https://www.encodeproject.org/files/ENCFF001UGM/@@download/ENCFF001UGM.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UGN bed broadPeak peaks ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 1 247190 Richard Myers, HAIB 8a84e128b8b4e2a278a41f71397b76c9 https://www.encodeproject.org/files/ENCFF001UGN/@@download/ENCFF001UGN.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PYE bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PYP 581600207 Richard Myers, HAIB 49696e44cbf4ffcbc750f108b83346e2 https://www.encodeproject.org/files/ENCFF000PYE/@@download/ENCFF000PYE.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYF bigBed broadPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UJN 275046 Richard Myers, HAIB 6396ba0e521a5363d66100eb3c3c3810 https://www.encodeproject.org/files/ENCFF000PYF/@@download/ENCFF000PYF.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYG bigBed broadPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UJO 382472 Richard Myers, HAIB 3ebda10c3010ba36f750d445c9cc6a16 https://www.encodeproject.org/files/ENCFF000PYG/@@download/ENCFF000PYG.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYH bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PYR 738742427 Richard Myers, HAIB 0063dade9f891f0c874c639f25ba0f22 https://www.encodeproject.org/files/ENCFF000PYH/@@download/ENCFF000PYH.bam hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYI bigWig raw signal ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 1 19745066 Richard Myers, HAIB da32d50f493b4262fbe71661e3438cc0 https://www.encodeproject.org/files/ENCFF000PYI/@@download/ENCFF000PYI.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYK bigWig raw signal ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 1 15863102 Richard Myers, HAIB 7c5708437ce525568c2d1e33e7e2d450 https://www.encodeproject.org/files/ENCFF000PYK/@@download/ENCFF000PYK.bigWig hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYP fastq reads ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 588274246 Richard Myers, HAIB ca3d789662155665e902f7500085029a https://www.encodeproject.org/files/ENCFF000PYP/@@download/ENCFF000PYP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000PYR fastq reads ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 751818317 Richard Myers, HAIB 8d178e051fa0dfebc6472db97887526a https://www.encodeproject.org/files/ENCFF000PYR/@@download/ENCFF000PYR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEZ/ released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001UJN bed broadPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 1 133235 Richard Myers, HAIB 494cf2eb4a4e61af4f28cbdabb92e34f https://www.encodeproject.org/files/ENCFF001UJN/@@download/ENCFF001UJN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001UJO bed broadPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 1 205299 Richard Myers, HAIB 46c1731bacab7c50cbc3bdafe122866b https://www.encodeproject.org/files/ENCFF001UJO/@@download/ENCFF001UJO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF002CLT bed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 223604 ENCODE Consortium Analysis Working Group be3ab73eefd11e9244d32e5ff3f9e878 https://www.encodeproject.org/files/ENCFF002CLT/@@download/ENCFF002CLT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF562MZN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLT 493500 ENCODE Consortium 56c823068640dad5f827e1f5ced547e0 https://www.encodeproject.org/files/ENCFF562MZN/@@download/ENCFF562MZN.bigBed hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF454MMY bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYP, ENCFF643CGH 173515741 ENCODE Processing Pipeline 2ae305446e2f9ccff0aa694687976fe1 https://www.encodeproject.org/files/ENCFF454MMY/@@download/ENCFF454MMY.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF674NLR bam unfiltered alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYP, ENCFF643CGH 681035261 ENCODE Processing Pipeline ebd348aae1fd387c00f3be199a94c8e5 https://www.encodeproject.org/files/ENCFF674NLR/@@download/ENCFF674NLR.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF310MOR bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYR, ENCFF643CGH 358057678 ENCODE Processing Pipeline d10690068504fe0172c3c4c3524ab20a https://www.encodeproject.org/files/ENCFF310MOR/@@download/ENCFF310MOR.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF186CHS bam unfiltered alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYR, ENCFF643CGH 885125423 ENCODE Processing Pipeline 158c7a4efa87936c14ecf0d1086a6dad https://www.encodeproject.org/files/ENCFF186CHS/@@download/ENCFF186CHS.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF097SZB bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYP, ENCFF807MUK 173750695 ENCODE Processing Pipeline 43dec3433f9a8fd555d3943a7234b628 https://www.encodeproject.org/files/ENCFF097SZB/@@download/ENCFF097SZB.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF072NCZ bam unfiltered alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYP, ENCFF807MUK 678667024 ENCODE Processing Pipeline 750f1c4cedd76e75a0d1597551700b2a https://www.encodeproject.org/files/ENCFF072NCZ/@@download/ENCFF072NCZ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF487BCT bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYR, ENCFF807MUK 358358664 ENCODE Processing Pipeline 63fb3ab8092b08728b1f64e5f62bcdf7 https://www.encodeproject.org/files/ENCFF487BCT/@@download/ENCFF487BCT.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF045OLP bam unfiltered alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYR, ENCFF807MUK 882820742 ENCODE Processing Pipeline 96707e647b0c91d995d9bd2450d02705 https://www.encodeproject.org/files/ENCFF045OLP/@@download/ENCFF045OLP.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF657ZXF bigWig signal p-value ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF454MMY 400274188 ENCODE Processing Pipeline 7d4f924a624e69aeca2dfd07de5ce52f https://www.encodeproject.org/files/ENCFF657ZXF/@@download/ENCFF657ZXF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF815MAO bigWig signal p-value ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310MOR 397111095 ENCODE Processing Pipeline 5450dccba3109d89f02da4ca57621227 https://www.encodeproject.org/files/ENCFF815MAO/@@download/ENCFF815MAO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF390UEN bigWig signal p-value ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310MOR, ENCFF454MMY 430598775 ENCODE Processing Pipeline 7d313fa2c531cb52f14d0839a7d2fc44 https://www.encodeproject.org/files/ENCFF390UEN/@@download/ENCFF390UEN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF239AZX bigWig fold change over control ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF454MMY 113570051 ENCODE Processing Pipeline 0d3a44e974a4b81278a92c1bae3aeadc https://www.encodeproject.org/files/ENCFF239AZX/@@download/ENCFF239AZX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF060KQV bigWig fold change over control ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310MOR 202666949 ENCODE Processing Pipeline 403be738afacba5a3148f7c209178631 https://www.encodeproject.org/files/ENCFF060KQV/@@download/ENCFF060KQV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF694EHL bigWig fold change over control ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310MOR, ENCFF454MMY 288288967 ENCODE Processing Pipeline eb03a9a739328b05e1723a59bdd8e8df https://www.encodeproject.org/files/ENCFF694EHL/@@download/ENCFF694EHL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF036DBK bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF454MMY 1665736 ENCODE Processing Pipeline 3fce9268c8cc973914edfc7dd81b2b3f https://www.encodeproject.org/files/ENCFF036DBK/@@download/ENCFF036DBK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF943BRX bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF310MOR 3851100 ENCODE Processing Pipeline d02cbd0eb2e02c428d530666e0d72eb9 https://www.encodeproject.org/files/ENCFF943BRX/@@download/ENCFF943BRX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF081QMM bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310MOR, ENCFF454MMY 4200248 ENCODE Processing Pipeline 757833ea1c24a80ef783e81e28aa707b https://www.encodeproject.org/files/ENCFF081QMM/@@download/ENCFF081QMM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF278WKB bigBed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF036DBK 3620948 ENCODE Processing Pipeline 2ea9cc7a22bccafe69b31b300c96e100 https://www.encodeproject.org/files/ENCFF278WKB/@@download/ENCFF278WKB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF737SZP bigBed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF943BRX 8156710 ENCODE Processing Pipeline ee5d319a6908ee567d08c2eab36cb739 https://www.encodeproject.org/files/ENCFF737SZP/@@download/ENCFF737SZP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF380EWF bigBed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF081QMM 8611472 ENCODE Processing Pipeline b37c6722370154b6712412218944c0fa https://www.encodeproject.org/files/ENCFF380EWF/@@download/ENCFF380EWF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF653WEF bed narrowPeak conservative idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036DBK, ENCFF081QMM, ENCFF419RSJ, ENCFF943BRX 177236 ENCODE Processing Pipeline de17ec2cde176b415fa6a7cade839301 https://www.encodeproject.org/files/ENCFF653WEF/@@download/ENCFF653WEF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF980TKJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF653WEF 341691 ENCODE Processing Pipeline f15b85cdd0e519f27b99d8ef11b9fd41 https://www.encodeproject.org/files/ENCFF980TKJ/@@download/ENCFF980TKJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF678TFE bed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036DBK, ENCFF081QMM, ENCFF419RSJ, ENCFF943BRX 217116 ENCODE Processing Pipeline 52cf0413173f65ad29804dc0a8b17381 https://www.encodeproject.org/files/ENCFF678TFE/@@download/ENCFF678TFE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF146UYC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF678TFE 394774 ENCODE Processing Pipeline 9e6d1985d87843fd310698c44fc38b80 https://www.encodeproject.org/files/ENCFF146UYC/@@download/ENCFF146UYC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF052RPO bigWig signal p-value ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 450819249 ENCODE Processing Pipeline fe5619b2a4d0ecab07249adf1f121877 https://www.encodeproject.org/files/ENCFF052RPO/@@download/ENCFF052RPO.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF910GYP bigWig fold change over control ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 201454359 ENCODE Processing Pipeline 1be02799433ce4c31334546851751981 https://www.encodeproject.org/files/ENCFF910GYP/@@download/ENCFF910GYP.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF722ARV bigBed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF504VLL 8149902 ENCODE Processing Pipeline 9afb5072a7a17663c65ee79fa3c745b4 https://www.encodeproject.org/files/ENCFF722ARV/@@download/ENCFF722ARV.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF504VLL bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 3854933 ENCODE Processing Pipeline 7b78071f18880830ee29c30fccc52ff4 https://www.encodeproject.org/files/ENCFF504VLL/@@download/ENCFF504VLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF985NLY bed narrowPeak conservative idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF035SJF, ENCFF233FNU, ENCFF504VLL 176883 ENCODE Processing Pipeline d1e28c43b61324144bb7ef76058ed034 https://www.encodeproject.org/files/ENCFF985NLY/@@download/ENCFF985NLY.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF472SHK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF985NLY 340801 ENCODE Processing Pipeline ce0acdce80151d1bac8caf6668aaffef https://www.encodeproject.org/files/ENCFF472SHK/@@download/ENCFF472SHK.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF589AZO bigWig fold change over control ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF097SZB, ENCFF235CSW, ENCFF750MIM 115228672 ENCODE Processing Pipeline 7a133c9e1d47b76861df3a7cc9aff8c4 https://www.encodeproject.org/files/ENCFF589AZO/@@download/ENCFF589AZO.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF233FNU bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF097SZB, ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 4205550 ENCODE Processing Pipeline 7e134d0a151c975273856ba8f4c3c78a https://www.encodeproject.org/files/ENCFF233FNU/@@download/ENCFF233FNU.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF962FQM bed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF035SJF, ENCFF233FNU, ENCFF504VLL 216173 ENCODE Processing Pipeline 317367ecb7b8653dcc677b264e32d6d4 https://www.encodeproject.org/files/ENCFF962FQM/@@download/ENCFF962FQM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF035SJF bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF097SZB, ENCFF235CSW, ENCFF750MIM 1679734 ENCODE Processing Pipeline 04bffe0c515af4aa90eeb9bb482f4cd8 https://www.encodeproject.org/files/ENCFF035SJF/@@download/ENCFF035SJF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF427BSL bigBed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF035SJF 3627469 ENCODE Processing Pipeline 87c91f79a724e8eeee52286bfe953d11 https://www.encodeproject.org/files/ENCFF427BSL/@@download/ENCFF427BSL.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF904RAD bigBed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF233FNU 8608396 ENCODE Processing Pipeline 2d535882c9558587dda2c66fda33edd9 https://www.encodeproject.org/files/ENCFF904RAD/@@download/ENCFF904RAD.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF494DFS bigWig signal p-value ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF097SZB, ENCFF235CSW, ENCFF750MIM 376863283 ENCODE Processing Pipeline 6cd7aaf4b56e76c04a5b8f589fe11887 https://www.encodeproject.org/files/ENCFF494DFS/@@download/ENCFF494DFS.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF512KRM bigWig signal p-value ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF097SZB, ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 456529253 ENCODE Processing Pipeline 108e58942e11bd455dfa3ac876a36ced https://www.encodeproject.org/files/ENCFF512KRM/@@download/ENCFF512KRM.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF648ABV bigWig fold change over control ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF097SZB, ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 288968924 ENCODE Processing Pipeline 0aa5801bca0b2fb3a9b105c303165d71 https://www.encodeproject.org/files/ENCFF648ABV/@@download/ENCFF648ABV.bigWig hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF435CYQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF962FQM 393332 ENCODE Processing Pipeline 9fdbb3c9cc73ccb422ab6ff61da7e6c9 https://www.encodeproject.org/files/ENCFF435CYQ/@@download/ENCFF435CYQ.bigBed hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF000XTK bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XUA 482617538 Michael Snyder, Stanford 51883ae3abea90c75583f89338e8dcda https://www.encodeproject.org/files/ENCFF000XTK/@@download/ENCFF000XTK.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTL bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XTZ 240483437 Michael Snyder, Stanford edee083c05ec98294b6ef00888002f02 https://www.encodeproject.org/files/ENCFF000XTL/@@download/ENCFF000XTL.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTM bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKJ 3822314 Michael Snyder, Stanford 76a0e050ff7daa65d2a38b12023cc1b7 https://www.encodeproject.org/files/ENCFF000XTM/@@download/ENCFF000XTM.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTP bigWig signal ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 314582441 Michael Snyder, Stanford 6f6a72fe48cf4264ece2a6146ae0ddc3 https://www.encodeproject.org/files/ENCFF000XTP/@@download/ENCFF000XTP.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF000XTZ fastq reads ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1180199413 Michael Snyder, Stanford c15e0f6b5b288c46086d9f49a1a71dfa https://www.encodeproject.org/files/ENCFF000XTZ/@@download/ENCFF000XTZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XUA fastq reads ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 985121606 Michael Snyder, Stanford 09e237f8c4cd5ab486cfd5f660fb7c27 https://www.encodeproject.org/files/ENCFF000XUA/@@download/ENCFF000XUA.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKJ bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1691935 Michael Snyder, Stanford c467f2b0360a8de6a8ddab64185d3919 https://www.encodeproject.org/files/ENCFF001VKJ/@@download/ENCFF001VKJ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CUG bed narrowPeak optimal idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 899877 ENCODE Consortium Analysis Working Group 30bb0d0ccfc211e2cda914387df1789f https://www.encodeproject.org/files/ENCFF002CUG/@@download/ENCFF002CUG.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF715UNN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUG 1840615 ENCODE Consortium 3fd0a55a9d2a93e7993f448c93963e48 https://www.encodeproject.org/files/ENCFF715UNN/@@download/ENCFF715UNN.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF836BQL bam unfiltered alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUA, ENCFF643CGH 1202031134 ENCODE Processing Pipeline e7fddf4e7d35ef3b7282fefe7337262b https://www.encodeproject.org/files/ENCFF836BQL/@@download/ENCFF836BQL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF851GVD bam unfiltered alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTZ, ENCFF643CGH 1290769491 ENCODE Processing Pipeline 3583684b940cf20c10e3cc7f7edbdf19 https://www.encodeproject.org/files/ENCFF851GVD/@@download/ENCFF851GVD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF728VLB bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUA, ENCFF643CGH 821406334 ENCODE Processing Pipeline ed18b1d9558d063986f872cf26581bbe https://www.encodeproject.org/files/ENCFF728VLB/@@download/ENCFF728VLB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF991ICQ bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTZ, ENCFF643CGH 628063006 ENCODE Processing Pipeline b79702a996fa9341f35917035e3de08a https://www.encodeproject.org/files/ENCFF991ICQ/@@download/ENCFF991ICQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF502ALK bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTZ, ENCFF807MUK 628333594 ENCODE Processing Pipeline a7fc9ce53890f66b6ad9652b6cc6ade8 https://www.encodeproject.org/files/ENCFF502ALK/@@download/ENCFF502ALK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF711YOB bam unfiltered alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTZ, ENCFF807MUK 1285380364 ENCODE Processing Pipeline 0129511d2f00335d7a84343b0d2cac40 https://www.encodeproject.org/files/ENCFF711YOB/@@download/ENCFF711YOB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF290LEB bam unfiltered alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUA, ENCFF807MUK 1196268076 ENCODE Processing Pipeline 3ad91559a23a903ec1552748eec99f40 https://www.encodeproject.org/files/ENCFF290LEB/@@download/ENCFF290LEB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848DMA bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUA, ENCFF807MUK 821830191 ENCODE Processing Pipeline 4bf12638efc36d807c182d428fcf6877 https://www.encodeproject.org/files/ENCFF848DMA/@@download/ENCFF848DMA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF035AQY bigWig signal p-value ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF728VLB 493517168 ENCODE Processing Pipeline 585dc121968361ae3d63c7c1309713ec https://www.encodeproject.org/files/ENCFF035AQY/@@download/ENCFF035AQY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF537VVN bigWig signal p-value ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF991ICQ 473016379 ENCODE Processing Pipeline de8d6f86ba214f811d8a8999a811e88e https://www.encodeproject.org/files/ENCFF537VVN/@@download/ENCFF537VVN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF489KDC bigWig signal p-value ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF728VLB, ENCFF991ICQ 692168616 ENCODE Processing Pipeline 6fed73ad69a683d40e708749e065802d https://www.encodeproject.org/files/ENCFF489KDC/@@download/ENCFF489KDC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF774NIT bigWig fold change over control ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF728VLB 455040704 ENCODE Processing Pipeline 72b3b37b786c25bb241665f7c3945412 https://www.encodeproject.org/files/ENCFF774NIT/@@download/ENCFF774NIT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998ARN bigWig fold change over control ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF728VLB, ENCFF991ICQ 639280783 ENCODE Processing Pipeline 577aca5c63ef0da54e1e08594346cdcc https://www.encodeproject.org/files/ENCFF998ARN/@@download/ENCFF998ARN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF721CND bigWig fold change over control ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF991ICQ 296994677 ENCODE Processing Pipeline e0183641f400bc05532b7205efeb9cc7 https://www.encodeproject.org/files/ENCFF721CND/@@download/ENCFF721CND.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF735OJR bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF728VLB 5249099 ENCODE Processing Pipeline 28d7470cb253de7cf08e04d0870ff792 https://www.encodeproject.org/files/ENCFF735OJR/@@download/ENCFF735OJR.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF538LGE bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF163JVC 11355566 ENCODE Processing Pipeline b8e0b626834151b07f266a43e4f1c384 https://www.encodeproject.org/files/ENCFF538LGE/@@download/ENCFF538LGE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF300VXA bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF735OJR 11477894 ENCODE Processing Pipeline 5e16e3485b2a5655ed4dd33eb5db092e https://www.encodeproject.org/files/ENCFF300VXA/@@download/ENCFF300VXA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF163JVC bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF991ICQ 4927322 ENCODE Processing Pipeline 8087fe0473eb9199746019a026cf8a87 https://www.encodeproject.org/files/ENCFF163JVC/@@download/ENCFF163JVC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357OHG bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF728VLB, ENCFF991ICQ 6057139 ENCODE Processing Pipeline 2d77ce2eecfe4a17c5930b2c1824aff9 https://www.encodeproject.org/files/ENCFF357OHG/@@download/ENCFF357OHG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF273IOC bed narrowPeak conservative idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF163JVC, ENCFF357OHG, ENCFF419RSJ, ENCFF735OJR 720520 ENCODE Processing Pipeline aeee172218b5b7c7d3c3f4362e58307f https://www.encodeproject.org/files/ENCFF273IOC/@@download/ENCFF273IOC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF156WCG bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF357OHG 11972299 ENCODE Processing Pipeline 568020d4f0d0c8e8188c8232777cad97 https://www.encodeproject.org/files/ENCFF156WCG/@@download/ENCFF156WCG.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF493TIR bed narrowPeak optimal idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF163JVC, ENCFF357OHG, ENCFF419RSJ, ENCFF735OJR 838351 ENCODE Processing Pipeline f9cb08b9e5250756b4bc776f4afa2a24 https://www.encodeproject.org/files/ENCFF493TIR/@@download/ENCFF493TIR.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF530NCV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF273IOC 1317687 ENCODE Processing Pipeline 4c6b1d4312210685503716171b8b8fee https://www.encodeproject.org/files/ENCFF530NCV/@@download/ENCFF530NCV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF531TOE bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF493TIR 1474332 ENCODE Processing Pipeline 3562d73e764b5804fe08b7af1992aa16 https://www.encodeproject.org/files/ENCFF531TOE/@@download/ENCFF531TOE.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF003CWL bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF848DMA 5252403 ENCODE Processing Pipeline 137fd7e28a92f48cf8613e70f19d9350 https://www.encodeproject.org/files/ENCFF003CWL/@@download/ENCFF003CWL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF550UII bigWig fold change over control ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF848DMA 468593056 ENCODE Processing Pipeline 98317929aff31ee423153f022d653ef5 https://www.encodeproject.org/files/ENCFF550UII/@@download/ENCFF550UII.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF175OAK bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF502ALK 4926544 ENCODE Processing Pipeline aad13ab9cb68b3b55c9bda0c603c69ee https://www.encodeproject.org/files/ENCFF175OAK/@@download/ENCFF175OAK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF721CTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF684ASX 1461725 ENCODE Processing Pipeline e3f2dbba9b93dd2250cc7d4e5c91629a https://www.encodeproject.org/files/ENCFF721CTA/@@download/ENCFF721CTA.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF604OER bigWig signal p-value ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF502ALK 447061382 ENCODE Processing Pipeline 25ecce1843048b9b0d80ee119f2da1b7 https://www.encodeproject.org/files/ENCFF604OER/@@download/ENCFF604OER.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF675WVK bigWig signal p-value ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF502ALK, ENCFF848DMA 692079927 ENCODE Processing Pipeline 9fee4a3723715a864b8b714143a845e6 https://www.encodeproject.org/files/ENCFF675WVK/@@download/ENCFF675WVK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF237PHI bigWig fold change over control ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF502ALK 299816784 ENCODE Processing Pipeline d1e52d4040b388870456c5adf96c9fc7 https://www.encodeproject.org/files/ENCFF237PHI/@@download/ENCFF237PHI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF173ZQX bigWig fold change over control ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF502ALK, ENCFF848DMA 642288456 ENCODE Processing Pipeline 7327d96b4b4320f078968961e78d5ac7 https://www.encodeproject.org/files/ENCFF173ZQX/@@download/ENCFF173ZQX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803LBU bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF611VKE 11969440 ENCODE Processing Pipeline cbab0ec43b7d3bbfa344a9aab4185a49 https://www.encodeproject.org/files/ENCFF803LBU/@@download/ENCFF803LBU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF645NAR bed narrowPeak conservative idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003CWL, ENCFF175OAK, ENCFF611VKE 719729 ENCODE Processing Pipeline b937deda350d04ba2f4be432da84ca0a https://www.encodeproject.org/files/ENCFF645NAR/@@download/ENCFF645NAR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF647KGV bigWig signal p-value ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF848DMA 568970277 ENCODE Processing Pipeline 7097e93f4623ac9848c05cbb2dadf20d https://www.encodeproject.org/files/ENCFF647KGV/@@download/ENCFF647KGV.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF849KES bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF003CWL 11475738 ENCODE Processing Pipeline fd69220591d780e6a7cdb1c3d65276ab https://www.encodeproject.org/files/ENCFF849KES/@@download/ENCFF849KES.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF390PLR bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF645NAR 1313709 ENCODE Processing Pipeline fb15925ff743f1956f56301275822e5d https://www.encodeproject.org/files/ENCFF390PLR/@@download/ENCFF390PLR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF611VKE bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF502ALK, ENCFF848DMA 6056481 ENCODE Processing Pipeline 58a8011553b6f43a789798369c5fa460 https://www.encodeproject.org/files/ENCFF611VKE/@@download/ENCFF611VKE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF412OHR bigBed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF175OAK 11346187 ENCODE Processing Pipeline aa2b007d2ba6e6460c5d24d40024a24d https://www.encodeproject.org/files/ENCFF412OHR/@@download/ENCFF412OHR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF684ASX bed narrowPeak optimal idr thresholded peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF003CWL, ENCFF175OAK, ENCFF611VKE 830843 ENCODE Processing Pipeline 78e68fd09e381d00943cc88af76f83b7 https://www.encodeproject.org/files/ENCFF684ASX/@@download/ENCFF684ASX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPM bam alignments ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XPR 331661630 Michael Snyder, Stanford 4c9866377d431fde637acfad3f21657c https://www.encodeproject.org/files/ENCFF000XPM/@@download/ENCFF000XPM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XPN bam alignments ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XPT 213659069 Michael Snyder, Stanford bef4c23200c1b16448885205fad43ae5 https://www.encodeproject.org/files/ENCFF000XPN/@@download/ENCFF000XPN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XPO bigBed narrowPeak peaks ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJX 642227 Michael Snyder, Stanford 69122dd0b6f3721d13b1917ff62c9f2e https://www.encodeproject.org/files/ENCFF000XPO/@@download/ENCFF000XPO.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XPP bigWig signal ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 297171080 Michael Snyder, Stanford e9c5e28f080a7e991f5bfcdaa8065aa9 https://www.encodeproject.org/files/ENCFF000XPP/@@download/ENCFF000XPP.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XPR fastq reads ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 251426147 Michael Snyder, Stanford 48e40ccf58e6abb3b79e52823ef19640 https://www.encodeproject.org/files/ENCFF000XPR/@@download/ENCFF000XPR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF000XPT fastq reads ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 164476933 Michael Snyder, Stanford 4941404cb1ba6f4e3982460c781aa346 https://www.encodeproject.org/files/ENCFF000XPT/@@download/ENCFF000XPT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF001VJX bed narrowPeak peaks ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 264506 Michael Snyder, Stanford 0dc1e694976b5459d0e7909b0792f764 https://www.encodeproject.org/files/ENCFF001VJX/@@download/ENCFF001VJX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CTV bed narrowPeak optimal idr thresholded peaks ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 354905 ENCODE Consortium Analysis Working Group bb8883f34158c90f74f0db1fbee71fcb https://www.encodeproject.org/files/ENCFF002CTV/@@download/ENCFF002CTV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF596BHT bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTV 683481 ENCODE Consortium 7cfcb693ee9d54edd1b1c0627a3ed8fa https://www.encodeproject.org/files/ENCFF596BHT/@@download/ENCFF596BHT.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XTG bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XTR 391838495 Michael Snyder, Stanford 3cff6651108929f365503d64cd2280ac https://www.encodeproject.org/files/ENCFF000XTG/@@download/ENCFF000XTG.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTH bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XTQ 353755854 Michael Snyder, Stanford 44916f3e36f0dc44c4e207cf551a0089 https://www.encodeproject.org/files/ENCFF000XTH/@@download/ENCFF000XTH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTI bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKI 3441659 Michael Snyder, Stanford 8d8e247ab01636d2c8d19a128665cfaf https://www.encodeproject.org/files/ENCFF000XTI/@@download/ENCFF000XTI.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTJ bigWig signal ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 442063827 Michael Snyder, Stanford f0adffcf3f0f7736a19be1619c2a8f20 https://www.encodeproject.org/files/ENCFF000XTJ/@@download/ENCFF000XTJ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XTQ fastq reads ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 718090996 Michael Snyder, Stanford 719f62c511b163712d2e50219cb826f0 https://www.encodeproject.org/files/ENCFF000XTQ/@@download/ENCFF000XTQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XTR fastq reads ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 993103007 Michael Snyder, Stanford b293dce4351a3e8b34ef2e304a04abe9 https://www.encodeproject.org/files/ENCFF000XTR/@@download/ENCFF000XTR.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VKI bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1525867 Michael Snyder, Stanford 92ab81d030febbb2cad08ff35f2dcb2e https://www.encodeproject.org/files/ENCFF001VKI/@@download/ENCFF001VKI.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CUF bed narrowPeak optimal idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 794821 ENCODE Consortium Analysis Working Group 3fce70d8366cc2820ce9610b64690f83 https://www.encodeproject.org/files/ENCFF002CUF/@@download/ENCFF002CUF.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF248WNB bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUF 1830951 ENCODE Consortium fa2121fde04f27a1fa35cbe70e305362 https://www.encodeproject.org/files/ENCFF248WNB/@@download/ENCFF248WNB.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF594GDM bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTQ, ENCFF643CGH 597403198 ENCODE Processing Pipeline b9fa06fcb2a966523a863e4673d52053 https://www.encodeproject.org/files/ENCFF594GDM/@@download/ENCFF594GDM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF676IYR bam unfiltered alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTQ, ENCFF643CGH 879682981 ENCODE Processing Pipeline 659fbde53ee208a206ccab2f78883e1b https://www.encodeproject.org/files/ENCFF676IYR/@@download/ENCFF676IYR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF750TAX bam unfiltered alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XTR, ENCFF643CGH 1176619564 ENCODE Processing Pipeline 814c1d687dbd0671ac4ea47aee0c0474 https://www.encodeproject.org/files/ENCFF750TAX/@@download/ENCFF750TAX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416LMF bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XTR, ENCFF643CGH 749066739 ENCODE Processing Pipeline b609df68118cb31c510a5495bdcb0f29 https://www.encodeproject.org/files/ENCFF416LMF/@@download/ENCFF416LMF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF172MMF bam unfiltered alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTQ, ENCFF807MUK 876057178 ENCODE Processing Pipeline 297011df0a39067fd604fdcc25f2c9ef https://www.encodeproject.org/files/ENCFF172MMF/@@download/ENCFF172MMF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF525YRO bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTQ, ENCFF807MUK 597701970 ENCODE Processing Pipeline 285b19672042da1c3b65636ace442436 https://www.encodeproject.org/files/ENCFF525YRO/@@download/ENCFF525YRO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392PTK bam unfiltered alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XTR, ENCFF807MUK 1170448807 ENCODE Processing Pipeline ddc612bec9cfb0b7f2fd9c8c08d2527d https://www.encodeproject.org/files/ENCFF392PTK/@@download/ENCFF392PTK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF371NBL bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XTR, ENCFF807MUK 749356000 ENCODE Processing Pipeline 9dc1289c0306ff1e63319056be41329f https://www.encodeproject.org/files/ENCFF371NBL/@@download/ENCFF371NBL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF347VZB bigWig signal p-value ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF416LMF, ENCFF594GDM 571640602 ENCODE Processing Pipeline 56083d8ccb462c8d641fd1241f0c52a6 https://www.encodeproject.org/files/ENCFF347VZB/@@download/ENCFF347VZB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF720EHK bigWig fold change over control ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF416LMF, ENCFF594GDM 637156734 ENCODE Processing Pipeline 0f83d04a9ff429b380a26ec7d75edb90 https://www.encodeproject.org/files/ENCFF720EHK/@@download/ENCFF720EHK.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527GYY bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF880ETD 11389671 ENCODE Processing Pipeline 69d8f6aaa49f968dd33276c1de6f89dd https://www.encodeproject.org/files/ENCFF527GYY/@@download/ENCFF527GYY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF243ZJS bigWig signal p-value ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF416LMF 471767736 ENCODE Processing Pipeline ac1909eb9a724f8c18e770738b848953 https://www.encodeproject.org/files/ENCFF243ZJS/@@download/ENCFF243ZJS.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF776HXA bigWig signal p-value ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF594GDM 487852794 ENCODE Processing Pipeline bf8895dbbea889dbda72eec43c19a28b https://www.encodeproject.org/files/ENCFF776HXA/@@download/ENCFF776HXA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF276MXL bigWig fold change over control ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF416LMF 403399630 ENCODE Processing Pipeline 973d084341543b413793488aadaa21e2 https://www.encodeproject.org/files/ENCFF276MXL/@@download/ENCFF276MXL.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF712CYB bigWig fold change over control ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF594GDM 350085307 ENCODE Processing Pipeline c416ccf98c1d1d07f230bce6072125a5 https://www.encodeproject.org/files/ENCFF712CYB/@@download/ENCFF712CYB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF190IVH bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF594GDM 5056642 ENCODE Processing Pipeline 9e52ed63d5ecae7748e4b77ab63cf93b https://www.encodeproject.org/files/ENCFF190IVH/@@download/ENCFF190IVH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430PEI bed narrowPeak optimal idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF040TDG, ENCFF190IVH, ENCFF419RSJ, ENCFF880ETD 724372 ENCODE Processing Pipeline c55e0473332f415453cb7e291d48b718 https://www.encodeproject.org/files/ENCFF430PEI/@@download/ENCFF430PEI.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF229VWM bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF190IVH 11409092 ENCODE Processing Pipeline 12e2d09472a76f9988b589520257331d https://www.encodeproject.org/files/ENCFF229VWM/@@download/ENCFF229VWM.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF396EWL bed narrowPeak conservative idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF040TDG, ENCFF190IVH, ENCFF419RSJ, ENCFF880ETD 637332 ENCODE Processing Pipeline 7d44f565ff6873009c9dbc2d7f550888 https://www.encodeproject.org/files/ENCFF396EWL/@@download/ENCFF396EWL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF882PYV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF430PEI 1254115 ENCODE Processing Pipeline a02becbc61c33c9b08ba431348c58f58 https://www.encodeproject.org/files/ENCFF882PYV/@@download/ENCFF882PYV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF880ETD bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF165KZY, ENCFF416LMF 5107474 ENCODE Processing Pipeline 5a41ff266e4025d04763ff0a7c493cef https://www.encodeproject.org/files/ENCFF880ETD/@@download/ENCFF880ETD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF374SMH bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF396EWL 1136151 ENCODE Processing Pipeline c179d0b46617590aab7cf18991cf47a6 https://www.encodeproject.org/files/ENCFF374SMH/@@download/ENCFF374SMH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF040TDG bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF165KZY, ENCFF416LMF, ENCFF594GDM 6028792 ENCODE Processing Pipeline 72db97f02233d14907fe7617d422d1a3 https://www.encodeproject.org/files/ENCFF040TDG/@@download/ENCFF040TDG.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF843XOC bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF040TDG 11851892 ENCODE Processing Pipeline 9652aa901e9e805198957ed1ab4d00ff https://www.encodeproject.org/files/ENCFF843XOC/@@download/ENCFF843XOC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF424CPW bigWig signal p-value ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF525YRO 548618325 ENCODE Processing Pipeline 3b6858b7ca145e78a1d64e7511344f58 https://www.encodeproject.org/files/ENCFF424CPW/@@download/ENCFF424CPW.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF049VHU bigWig signal p-value ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF371NBL, ENCFF525YRO 685663772 ENCODE Processing Pipeline 53f6527e1785cd3c8d2a6e733953f791 https://www.encodeproject.org/files/ENCFF049VHU/@@download/ENCFF049VHU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF335URU bigWig fold change over control ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF525YRO 350941188 ENCODE Processing Pipeline 4acfcfdded65ea04f9aefcacbe7547c3 https://www.encodeproject.org/files/ENCFF335URU/@@download/ENCFF335URU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF876YHP bigWig fold change over control ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF371NBL 403708912 ENCODE Processing Pipeline 1a9addf38b801e612b6cf2c53d4a5414 https://www.encodeproject.org/files/ENCFF876YHP/@@download/ENCFF876YHP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF993LAG bigWig signal p-value ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF371NBL 505707918 ENCODE Processing Pipeline 53a9ea0ed7467ed350d7fe2d74810a3e https://www.encodeproject.org/files/ENCFF993LAG/@@download/ENCFF993LAG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF109WRJ bigWig fold change over control ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF371NBL, ENCFF525YRO 634416735 ENCODE Processing Pipeline 4ce5134e4feadc0b885a65f0dff222c4 https://www.encodeproject.org/files/ENCFF109WRJ/@@download/ENCFF109WRJ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF344DTP bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF716IBZ 11388671 ENCODE Processing Pipeline faccd3beb2245a945dcccc3ece861f64 https://www.encodeproject.org/files/ENCFF344DTP/@@download/ENCFF344DTP.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF964XWW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF596XCU 1133749 ENCODE Processing Pipeline e94709dc68ca6bfdef291f4ffe8677a9 https://www.encodeproject.org/files/ENCFF964XWW/@@download/ENCFF964XWW.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716IBZ bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF371NBL 5109965 ENCODE Processing Pipeline 0499c1bd1214452c6e422672dbb66a18 https://www.encodeproject.org/files/ENCFF716IBZ/@@download/ENCFF716IBZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF951EMI bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF371NBL, ENCFF525YRO 6025754 ENCODE Processing Pipeline 80b41a74ccbba0af5245bdd07ebcf2ea https://www.encodeproject.org/files/ENCFF951EMI/@@download/ENCFF951EMI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF979RHK bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF185JWL 11407989 ENCODE Processing Pipeline c21bf31e62cc5bec12784bb9a4450d4e https://www.encodeproject.org/files/ENCFF979RHK/@@download/ENCFF979RHK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF854NRG bigBed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF951EMI 11847340 ENCODE Processing Pipeline a397338d6288bd86356ac66bc30f5996 https://www.encodeproject.org/files/ENCFF854NRG/@@download/ENCFF854NRG.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185JWL bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF525YRO 5058470 ENCODE Processing Pipeline 93a65a9f20b31a55bc321b949cf33fac https://www.encodeproject.org/files/ENCFF185JWL/@@download/ENCFF185JWL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF596XCU bed narrowPeak conservative idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF185JWL, ENCFF716IBZ, ENCFF951EMI 636172 ENCODE Processing Pipeline a3e65818ed1bd73d3d5aca4d679d8626 https://www.encodeproject.org/files/ENCFF596XCU/@@download/ENCFF596XCU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF085GOJ bed narrowPeak optimal idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF185JWL, ENCFF716IBZ, ENCFF951EMI 714125 ENCODE Processing Pipeline 88fcc0c2c3af76c5a6ecc6e6f7cc3b2c https://www.encodeproject.org/files/ENCFF085GOJ/@@download/ENCFF085GOJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285KGJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF085GOJ 1238769 ENCODE Processing Pipeline 0e4864483cba791b1b90b80e271439b3 https://www.encodeproject.org/files/ENCFF285KGJ/@@download/ENCFF285KGJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HXH bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXT 543418783 John Stamatoyannopoulos, UW 40c54f614a152795a5cca2ad353c693a https://www.encodeproject.org/files/ENCFF001HXH/@@download/ENCFF001HXH.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXI bigBed broadPeak hotspots ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XTT 4530090 John Stamatoyannopoulos, UW 6d6e48e67c2cc72cc575610d7335b1af https://www.encodeproject.org/files/ENCFF001HXI/@@download/ENCFF001HXI.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXJ bigBed broadPeak hotspots ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XTU 4661932 John Stamatoyannopoulos, UW e99a61b73f56334c54e7b22138bc0a7e https://www.encodeproject.org/files/ENCFF001HXJ/@@download/ENCFF001HXJ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXK bigBed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XTV 1554893 John Stamatoyannopoulos, UW 142e84cffe8b9025869f484ae5672e5c https://www.encodeproject.org/files/ENCFF001HXK/@@download/ENCFF001HXK.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXL bigBed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XTW 1533420 John Stamatoyannopoulos, UW f2e63b23fe5d92e1c507ebbd896f3a6d https://www.encodeproject.org/files/ENCFF001HXL/@@download/ENCFF001HXL.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXM bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXU 575328861 John Stamatoyannopoulos, UW 15b8b58d4061249fd4c7292173813643 https://www.encodeproject.org/files/ENCFF001HXM/@@download/ENCFF001HXM.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXO bigWig raw signal ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXH 75450076 John Stamatoyannopoulos, UW 590f8042b7faf313b512526efc99b9e8 https://www.encodeproject.org/files/ENCFF001HXO/@@download/ENCFF001HXO.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXP bigWig raw signal ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXM 72821428 John Stamatoyannopoulos, UW 686a7b8885cc61813664de0f0ea2d3f9 https://www.encodeproject.org/files/ENCFF001HXP/@@download/ENCFF001HXP.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXT fastq reads ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 657245980 John Stamatoyannopoulos, UW 62a1865e4de7f6f40f364cbeba5741f3 https://www.encodeproject.org/files/ENCFF001HXT/@@download/ENCFF001HXT.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HYC/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001HXU fastq reads ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 688061884 John Stamatoyannopoulos, UW 437f48f192081f1a44aa6f63a8062dc8 https://www.encodeproject.org/files/ENCFF001HXU/@@download/ENCFF001HXU.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HYC/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XTT bed broadPeak hotspots ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXH 2460548 John Stamatoyannopoulos, UW 11a3f58ed4d43e4bf6cf193cfa3d5219 https://www.encodeproject.org/files/ENCFF001XTT/@@download/ENCFF001XTT.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XTU bed broadPeak hotspots ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXM 2531403 John Stamatoyannopoulos, UW 9b2b5f54de9b05e474468d611a702be3 https://www.encodeproject.org/files/ENCFF001XTU/@@download/ENCFF001XTU.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XTV bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXH 926574 John Stamatoyannopoulos, UW d8ab7dcdd22ed428a6c1d8cf296dffc5 https://www.encodeproject.org/files/ENCFF001XTV/@@download/ENCFF001XTV.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF001XTW bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXM 914739 John Stamatoyannopoulos, UW 1564f3e09164f441c6b6b87d8aaf9dd8 https://www.encodeproject.org/files/ENCFF001XTW/@@download/ENCFF001XTW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF002DDR bed narrowPeak optimal idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HXH, ENCFF001HXM 1039198 ENCODE Consortium Analysis Working Group 6801e70f2927cea7c72e99d45ebc7727 https://www.encodeproject.org/files/ENCFF002DDR/@@download/ENCFF002DDR.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF045HNE bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDR 2199298 ENCODE Consortium 4bca7f688103962923f552defb22288b https://www.encodeproject.org/files/ENCFF045HNE/@@download/ENCFF045HNE.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF586CMC bam unfiltered alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXU, ENCFF643CGH 725373343 ENCODE Processing Pipeline 7912c064cc63712787cca20a8267bd67 https://www.encodeproject.org/files/ENCFF586CMC/@@download/ENCFF586CMC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF893HMO bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXT, ENCFF643CGH 365418600 ENCODE Processing Pipeline b9f8ee58b436bc3cb76f4025c7718018 https://www.encodeproject.org/files/ENCFF893HMO/@@download/ENCFF893HMO.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF531WAL bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXU, ENCFF643CGH 341560311 ENCODE Processing Pipeline 342582630c18982c87d5bdd7af966372 https://www.encodeproject.org/files/ENCFF531WAL/@@download/ENCFF531WAL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF473FSX bam unfiltered alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXT, ENCFF643CGH 706011263 ENCODE Processing Pipeline 885c2f586243f399c75d08f9d1014e8f https://www.encodeproject.org/files/ENCFF473FSX/@@download/ENCFF473FSX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF998ZWT bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXT, ENCFF807MUK 365573262 ENCODE Processing Pipeline 1de0f15b1bbccdc2ddae80b8d9255dba https://www.encodeproject.org/files/ENCFF998ZWT/@@download/ENCFF998ZWT.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF128LTV bam unfiltered alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXT, ENCFF807MUK 704311932 ENCODE Processing Pipeline 115da28b68eaeb2a7da62af32e928147 https://www.encodeproject.org/files/ENCFF128LTV/@@download/ENCFF128LTV.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF823NFU bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXU, ENCFF807MUK 341683493 ENCODE Processing Pipeline d25ee73c40f5c8ced639355f494ef099 https://www.encodeproject.org/files/ENCFF823NFU/@@download/ENCFF823NFU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF744GYJ bam unfiltered alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXU, ENCFF807MUK 723588001 ENCODE Processing Pipeline 4242df33f7afa40651b748715025ab9b https://www.encodeproject.org/files/ENCFF744GYJ/@@download/ENCFF744GYJ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF283YMA bigWig fold change over control ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF328BRW, ENCFF998ZWT 123371966 ENCODE Processing Pipeline 3497553b112cdebc02960f8210012412 https://www.encodeproject.org/files/ENCFF283YMA/@@download/ENCFF283YMA.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF046MKK bigWig fold change over control ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF328BRW, ENCFF823NFU 118902958 ENCODE Processing Pipeline b78965ceb306ce16c7dcc4562f44aaf9 https://www.encodeproject.org/files/ENCFF046MKK/@@download/ENCFF046MKK.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF304VXW bigWig signal p-value ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF328BRW, ENCFF998ZWT 308111129 ENCODE Processing Pipeline fbf0255c3486d72b36ad11dd8a21044e https://www.encodeproject.org/files/ENCFF304VXW/@@download/ENCFF304VXW.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF359EWI bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF328BRW, ENCFF998ZWT 2661982 ENCODE Processing Pipeline 0c8d8b15f79694ccea73ca291bcbd773 https://www.encodeproject.org/files/ENCFF359EWI/@@download/ENCFF359EWI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF806CSP bed narrowPeak conservative idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF020JUP, ENCFF359EWI, ENCFF655SOH 782618 ENCODE Processing Pipeline c2a7faad07fd3848e8ae61fd15727ed6 https://www.encodeproject.org/files/ENCFF806CSP/@@download/ENCFF806CSP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF193XFG bigWig signal p-value ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF328BRW, ENCFF823NFU 263613135 ENCODE Processing Pipeline 3e5e4f82526def60b638a92c3c4d016e https://www.encodeproject.org/files/ENCFF193XFG/@@download/ENCFF193XFG.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF321ZFJ bigBed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF359EWI 5465968 ENCODE Processing Pipeline 349145ff9fd0af4b53d4ef9479d7d9a7 https://www.encodeproject.org/files/ENCFF321ZFJ/@@download/ENCFF321ZFJ.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF015SCB bigBed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF655SOH 5587368 ENCODE Processing Pipeline ff77eefe325efc76cf0c62ecc9fe3d14 https://www.encodeproject.org/files/ENCFF015SCB/@@download/ENCFF015SCB.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF696RER bigWig signal p-value ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF328BRW, ENCFF823NFU, ENCFF998ZWT 315384305 ENCODE Processing Pipeline f2a731d8a48270be9300d140e696857c https://www.encodeproject.org/files/ENCFF696RER/@@download/ENCFF696RER.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF316NHY bed narrowPeak optimal idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF020JUP, ENCFF359EWI, ENCFF655SOH 815709 ENCODE Processing Pipeline 84970e70aa32e04a1ed816bdb3e001b6 https://www.encodeproject.org/files/ENCFF316NHY/@@download/ENCFF316NHY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF423BTX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF316NHY 1486008 ENCODE Processing Pipeline 8f69d7656ef61bbdec3173ff895a6872 https://www.encodeproject.org/files/ENCFF423BTX/@@download/ENCFF423BTX.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF888ZZT bigWig fold change over control ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF328BRW, ENCFF823NFU, ENCFF998ZWT 212988477 ENCODE Processing Pipeline c3b917c72b86e4d56c57889add0792ca https://www.encodeproject.org/files/ENCFF888ZZT/@@download/ENCFF888ZZT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF655SOH bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF328BRW, ENCFF823NFU 2728211 ENCODE Processing Pipeline a0247abb24ee37b1c64e2a77ebf176ee https://www.encodeproject.org/files/ENCFF655SOH/@@download/ENCFF655SOH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF349WKH bigBed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF020JUP 10409923 ENCODE Processing Pipeline 1a8e31d32ae986edb14cd7e86f9046f0 https://www.encodeproject.org/files/ENCFF349WKH/@@download/ENCFF349WKH.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF020JUP bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF328BRW, ENCFF823NFU, ENCFF998ZWT 4397241 ENCODE Processing Pipeline 42b2eb6c13e1e7a154c8f10922a9f1e8 https://www.encodeproject.org/files/ENCFF020JUP/@@download/ENCFF020JUP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF186WSW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF806CSP 1440881 ENCODE Processing Pipeline 310563ee790b316f45a32555e5ef9df4 https://www.encodeproject.org/files/ENCFF186WSW/@@download/ENCFF186WSW.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000RAP bam alignments ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RBC 1062186505 Richard Myers, HAIB 1cfa63cd43299a70ac9549f08a42acc1 https://www.encodeproject.org/files/ENCFF000RAP/@@download/ENCFF000RAP.bam hg19 released biological replicates with identical biosample ENCFF000RAQ bigBed broadPeak peaks ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPV 777854 Richard Myers, HAIB 26588400b7c2cb198412ddb17e22cafb https://www.encodeproject.org/files/ENCFF000RAQ/@@download/ENCFF000RAQ.bigBed hg19 released biological replicates with identical biosample ENCFF000RAR bigBed broadPeak peaks ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPW 241127 Richard Myers, HAIB d07801d864aa889ee6fd5aab7438038b https://www.encodeproject.org/files/ENCFF000RAR/@@download/ENCFF000RAR.bigBed hg19 released biological replicates with identical biosample ENCFF000RAS bam alignments ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RBI 1887547671 Richard Myers, HAIB 8622bf399ba2fbfc2bc7f63e0bfb0ea2 https://www.encodeproject.org/files/ENCFF000RAS/@@download/ENCFF000RAS.bam hg19 released biological replicates with identical biosample ENCFF000RAU bigWig raw signal ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 211375589 Richard Myers, HAIB bd0af88544eafda7444a28fa5463d347 https://www.encodeproject.org/files/ENCFF000RAU/@@download/ENCFF000RAU.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RAV bigWig raw signal ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 122702955 Richard Myers, HAIB 3c22782da9b27b0127e45347dd5957a9 https://www.encodeproject.org/files/ENCFF000RAV/@@download/ENCFF000RAV.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000RBC fastq reads ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1080514254 Richard Myers, HAIB 11be5307c52b49f9e35f19cbfa7ed7e5 https://www.encodeproject.org/files/ENCFF000RBC/@@download/ENCFF000RBC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF000RBI fastq reads ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2029947909 Richard Myers, HAIB 7fe941950df6f345c5390e8ea827f0f5 https://www.encodeproject.org/files/ENCFF000RBI/@@download/ENCFF000RBI.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPV bed broadPeak peaks ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 1 406488 Richard Myers, HAIB c0b551ba58bb36460a011f8c34b8ad5d https://www.encodeproject.org/files/ENCFF001UPV/@@download/ENCFF001UPV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPW bed broadPeak peaks ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 1 109207 Richard Myers, HAIB 09a6f8e329b6c026c7e16882bbd4ee1c https://www.encodeproject.org/files/ENCFF001UPW/@@download/ENCFF001UPW.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000AUY bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 1 1237792345 Bradley Bernstein, Broad faa3fd3457489b193b5d1b5219b397c5 https://www.encodeproject.org/files/ENCFF000AUY/@@download/ENCFF000AUY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from insufficient replicate concordance ENCFF000AUZ bigBed broadPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SUS 1510321 Bradley Bernstein, Broad 6ff2f093d0078645a1e9449961e4ba8b https://www.encodeproject.org/files/ENCFF000AUZ/@@download/ENCFF000AUZ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF000AVE bigWig signal ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 408082341 Bradley Bernstein, Broad 7566b27793deeda9e33946608ee3fc2c https://www.encodeproject.org/files/ENCFF000AVE/@@download/ENCFF000AVE.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from insufficient replicate concordance ENCFF000AVL fastq reads ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1354631569 Bradley Bernstein, Broad 4af671cfe63ca9efc1a487d8dd363440 https://www.encodeproject.org/files/ENCFF000AVL/@@download/ENCFF000AVL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF001SUS bed broadPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 802127 Bradley Bernstein, Broad eb41538cd496a0993d4e03fc50dd4ec6 https://www.encodeproject.org/files/ENCFF001SUS/@@download/ENCFF001SUS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from insufficient replicate concordance ENCFF349SFU fastq reads ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 946468352 Bradley Bernstein, Broad d1e8afdaaf58066c1fa782b621554ddd https://www.encodeproject.org/files/ENCFF349SFU/@@download/ENCFF349SFU.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF580HUJ fastq reads ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 2 36 single-ended 1129987110 Bradley Bernstein, Broad 8e3800b22345dcd384cb4dca8d0a7e6e https://www.encodeproject.org/files/ENCFF580HUJ/@@download/ENCFF580HUJ.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF876WBK bam unfiltered alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AVL, ENCFF643CGH 1744456515 ENCODE Processing Pipeline 7a9a412755e4b9082f3c2560ea27ca9f https://www.encodeproject.org/files/ENCFF876WBK/@@download/ENCFF876WBK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF844PQH bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AVL, ENCFF643CGH 826833650 ENCODE Processing Pipeline 1bb7f74459da4b5b9e0a2f27c226e268 https://www.encodeproject.org/files/ENCFF844PQH/@@download/ENCFF844PQH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF123EBF bam unfiltered alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF349SFU, ENCFF580HUJ, ENCFF643CGH 2866789773 ENCODE Processing Pipeline 0e8258b5ac1c119d42d27a0c5919599c https://www.encodeproject.org/files/ENCFF123EBF/@@download/ENCFF123EBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF906SNA bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF349SFU, ENCFF580HUJ, ENCFF643CGH 1882138342 ENCODE Processing Pipeline 48294954282418dca0b0e0424b727710 https://www.encodeproject.org/files/ENCFF906SNA/@@download/ENCFF906SNA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF232OJM bam unfiltered alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF349SFU, ENCFF580HUJ, ENCFF807MUK 2852742145 ENCODE Processing Pipeline 36741def48215570906948cd33fb7632 https://www.encodeproject.org/files/ENCFF232OJM/@@download/ENCFF232OJM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF260SFQ bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF349SFU, ENCFF580HUJ, ENCFF807MUK 1882750169 ENCODE Processing Pipeline 4cc258543f677279c19d3b5ddab3a1cd https://www.encodeproject.org/files/ENCFF260SFQ/@@download/ENCFF260SFQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF454EFP bam unfiltered alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AVL, ENCFF847CCY 1735039076 ENCODE Processing Pipeline d794ee108d1996b178264720724653ac https://www.encodeproject.org/files/ENCFF454EFP/@@download/ENCFF454EFP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF290WMD bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AVL, ENCFF847CCY 827147757 ENCODE Processing Pipeline 3d872f9b25df6b885e3504c1f2839b6d https://www.encodeproject.org/files/ENCFF290WMD/@@download/ENCFF290WMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF935ZZC bigWig signal p-value ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF290WMD, ENCFF727XHW 1754678462 ENCODE Processing Pipeline 881413329f84419826c92466da1755be https://www.encodeproject.org/files/ENCFF935ZZC/@@download/ENCFF935ZZC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF118JEP bigWig fold change over control ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF290WMD, ENCFF727XHW 1004994972 ENCODE Processing Pipeline 31d5b0e6e0a0ae40723ddd4f954a962e https://www.encodeproject.org/files/ENCFF118JEP/@@download/ENCFF118JEP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF441IQN bigWig signal p-value ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF243MTV, ENCFF260SFQ, ENCFF290WMD, ENCFF727XHW 2276071625 ENCODE Processing Pipeline 9829913ffa5463a8d31a9f111d25f8ee https://www.encodeproject.org/files/ENCFF441IQN/@@download/ENCFF441IQN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF441XPW bigWig signal p-value ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF260SFQ, ENCFF727XHW 1982929728 ENCODE Processing Pipeline d0a31d21e19505ec2f311bc1096fe795 https://www.encodeproject.org/files/ENCFF441XPW/@@download/ENCFF441XPW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF676OLS bigBed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF061FAC 13100700 ENCODE Processing Pipeline 4a2e3852e917af23c914a82fa8beeeae https://www.encodeproject.org/files/ENCFF676OLS/@@download/ENCFF676OLS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF532HJO bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF260SFQ, ENCFF727XHW 7194274 ENCODE Processing Pipeline 292b414655b7f6eab21bdefc6152531f https://www.encodeproject.org/files/ENCFF532HJO/@@download/ENCFF532HJO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF061FAC bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF243MTV, ENCFF260SFQ, ENCFF290WMD, ENCFF727XHW 7218808 ENCODE Processing Pipeline d3b38730520b1f8e38899c4af7b9ea76 https://www.encodeproject.org/files/ENCFF061FAC/@@download/ENCFF061FAC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF276TUD bed narrowPeak conservative idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF061FAC, ENCFF532HJO, ENCFF791IYQ 60113 ENCODE Processing Pipeline 0c8d450aa468de7eb2612cb63f7aa90f https://www.encodeproject.org/files/ENCFF276TUD/@@download/ENCFF276TUD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF869CHV bigWig fold change over control ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF260SFQ, ENCFF727XHW 2209847420 ENCODE Processing Pipeline b31981b1c5b248f99664b2e71fc70a36 https://www.encodeproject.org/files/ENCFF869CHV/@@download/ENCFF869CHV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF611LDM bigWig fold change over control ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF243MTV, ENCFF260SFQ, ENCFF290WMD, ENCFF727XHW 2275915655 ENCODE Processing Pipeline 1e596412fe4d52f387832645c0c24678 https://www.encodeproject.org/files/ENCFF611LDM/@@download/ENCFF611LDM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF791IYQ bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF290WMD, ENCFF727XHW 5711895 ENCODE Processing Pipeline e1509a146bb7ec786360f5f8d99d1ec1 https://www.encodeproject.org/files/ENCFF791IYQ/@@download/ENCFF791IYQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF723KWE bigBed narrowPeak conservative idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF276TUD 153104 ENCODE Processing Pipeline 32a24fce5796a64c542e366d02196680 https://www.encodeproject.org/files/ENCFF723KWE/@@download/ENCFF723KWE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF628RLE bed narrowPeak optimal idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF061FAC, ENCFF532HJO, ENCFF791IYQ 124647 ENCODE Processing Pipeline aa2db3fc9463f50dc7d4355659b1e0c8 https://www.encodeproject.org/files/ENCFF628RLE/@@download/ENCFF628RLE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF250NGU bigBed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF791IYQ 11378553 ENCODE Processing Pipeline 2e0d92ee55e9659b03ad5a3b4852ecd3 https://www.encodeproject.org/files/ENCFF250NGU/@@download/ENCFF250NGU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF066OQS bigBed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF532HJO 13072616 ENCODE Processing Pipeline b520f9922dc882c3cf8ed19b7219781f https://www.encodeproject.org/files/ENCFF066OQS/@@download/ENCFF066OQS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF786YIR bigBed narrowPeak optimal idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF628RLE 290945 ENCODE Processing Pipeline 0b708d1b6837ac17620d1cfc4ba662c4 https://www.encodeproject.org/files/ENCFF786YIR/@@download/ENCFF786YIR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF889ODJ bigWig signal p-value ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF844PQH 1749106022 ENCODE Processing Pipeline 58c655565d6f7aa464284334ef227635 https://www.encodeproject.org/files/ENCFF889ODJ/@@download/ENCFF889ODJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF450JZY bigWig fold change over control ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF844PQH 1008464303 ENCODE Processing Pipeline cb92b904e94ef3960e510707dacbc2f1 https://www.encodeproject.org/files/ENCFF450JZY/@@download/ENCFF450JZY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF781NDN bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF844PQH 5682802 ENCODE Processing Pipeline 6175499cdb48e659bc557f04b50ef6e9 https://www.encodeproject.org/files/ENCFF781NDN/@@download/ENCFF781NDN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF697LJL bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF906SNA 7192429 ENCODE Processing Pipeline 56c8257bc999521f0618e93441ab7222 https://www.encodeproject.org/files/ENCFF697LJL/@@download/ENCFF697LJL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF280FIG bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF844PQH, ENCFF906SNA 7211856 ENCODE Processing Pipeline fe71d29997645bf8734ec716a923794d https://www.encodeproject.org/files/ENCFF280FIG/@@download/ENCFF280FIG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF363TKQ bigBed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF697LJL 13107905 ENCODE Processing Pipeline 9b18402f89d24a71bb20b411803fb8df https://www.encodeproject.org/files/ENCFF363TKQ/@@download/ENCFF363TKQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF100GWW bed narrowPeak conservative idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF280FIG, ENCFF419RSJ, ENCFF697LJL, ENCFF781NDN 62246 ENCODE Processing Pipeline eb0f130534f86da5222e17a8d0811439 https://www.encodeproject.org/files/ENCFF100GWW/@@download/ENCFF100GWW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF931YNZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF100GWW 156280 ENCODE Processing Pipeline 6137ab3b8f2a0acb6042ca93f4a11d6a https://www.encodeproject.org/files/ENCFF931YNZ/@@download/ENCFF931YNZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF658SXI bed narrowPeak optimal idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF280FIG, ENCFF419RSJ, ENCFF697LJL, ENCFF781NDN 122072 ENCODE Processing Pipeline 1ee91329fad981f8122dadc318d79650 https://www.encodeproject.org/files/ENCFF658SXI/@@download/ENCFF658SXI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF760XSM bigBed narrowPeak optimal idr thresholded peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF658SXI 288940 ENCODE Processing Pipeline f1071ad15ed8c7dfa3b5029a7149b629 https://www.encodeproject.org/files/ENCFF760XSM/@@download/ENCFF760XSM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF575OWE bigWig fold change over control ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF844PQH, ENCFF906SNA 2277815028 ENCODE Processing Pipeline f1c418d8194aaa2ceade469e143d29cd https://www.encodeproject.org/files/ENCFF575OWE/@@download/ENCFF575OWE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF916MHL bigWig signal p-value ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF906SNA 2186669128 ENCODE Processing Pipeline 596f66f6a022b5d689dd4b16b0d446a3 https://www.encodeproject.org/files/ENCFF916MHL/@@download/ENCFF916MHL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF102VHY bigWig signal p-value ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF844PQH, ENCFF906SNA 2212035235 ENCODE Processing Pipeline eb952d2e9dc11021c950b721f9b6f23c https://www.encodeproject.org/files/ENCFF102VHY/@@download/ENCFF102VHY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF530LBH bigWig fold change over control ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF906SNA 2176256120 ENCODE Processing Pipeline 8f25feb4b8c1d4afae1ad40cf56ebce9 https://www.encodeproject.org/files/ENCFF530LBH/@@download/ENCFF530LBH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF392VOX bigBed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF781NDN 11455266 ENCODE Processing Pipeline 14a2a50ee35d2ae742729c3195e3773f https://www.encodeproject.org/files/ENCFF392VOX/@@download/ENCFF392VOX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF903XNS bigBed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF280FIG 13104755 ENCODE Processing Pipeline 5523bf1943b35f527b4b5d0ca3ac949b https://www.encodeproject.org/files/ENCFF903XNS/@@download/ENCFF903XNS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF000QXV bam alignments ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYH 1381669464 Richard Myers, HAIB 4d1511e4f7139ff7f0d6ffaff4931801 https://www.encodeproject.org/files/ENCFF000QXV/@@download/ENCFF000QXV.bam hg19 released biological replicates with identical biosample ENCFF000QXW bigBed broadPeak peaks ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPD 95308 Richard Myers, HAIB cb6fae9eca853a871dc822cd36a4ad16 https://www.encodeproject.org/files/ENCFF000QXW/@@download/ENCFF000QXW.bigBed hg19 released biological replicates with identical biosample ENCFF000QXX bigBed broadPeak peaks ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPE 112401 Richard Myers, HAIB ffde498d8d3db791acd8e67d2d3b7e81 https://www.encodeproject.org/files/ENCFF000QXX/@@download/ENCFF000QXX.bigBed hg19 released biological replicates with identical biosample ENCFF000QXY bam alignments ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QYJ 1223341202 Richard Myers, HAIB f9016ae757ea9f2ab0ac94feeed00aa9 https://www.encodeproject.org/files/ENCFF000QXY/@@download/ENCFF000QXY.bam hg19 released biological replicates with identical biosample ENCFF000QXZ bigWig raw signal ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 117115246 Richard Myers, HAIB c915d6fef186b7ca6f5592fdeb09aad1 https://www.encodeproject.org/files/ENCFF000QXZ/@@download/ENCFF000QXZ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QYB bigWig raw signal ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 130936144 Richard Myers, HAIB 54edc4e95fc07092ad4216e7662ce663 https://www.encodeproject.org/files/ENCFF000QYB/@@download/ENCFF000QYB.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QYH fastq reads ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1444396683 Richard Myers, HAIB 086f6cab26bdcaea2898c31a9092ec7d https://www.encodeproject.org/files/ENCFF000QYH/@@download/ENCFF000QYH.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF000QYJ fastq reads ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1225782084 Richard Myers, HAIB 557069cc1503de5f345dc71e71220f72 https://www.encodeproject.org/files/ENCFF000QYJ/@@download/ENCFF000QYJ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPD bed broadPeak peaks ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 1 32584 Richard Myers, HAIB 59375fec2bde32806543c3343e78cc84 https://www.encodeproject.org/files/ENCFF001UPD/@@download/ENCFF001UPD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPE bed broadPeak peaks ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 1 35784 Richard Myers, HAIB af66c39671d87b1ecfceac1dae6f7d6d https://www.encodeproject.org/files/ENCFF001UPE/@@download/ENCFF001UPE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000AZG bigBed broadPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE ENCFF001SVL 784605 Bradley Bernstein, Broad bfbcab246822b1cf7836dadc8de2783a https://www.encodeproject.org/files/ENCFF000AZG/@@download/ENCFF000AZG.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AZH bigWig signal ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 270651358 Bradley Bernstein, Broad 90661c91a17edcb585214f9dd509ff21 https://www.encodeproject.org/files/ENCFF000AZH/@@download/ENCFF000AZH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from ENCFF000AZI bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 1 787045145 Bradley Bernstein, Broad 25d870034a5ec8db754e757f3283febc https://www.encodeproject.org/files/ENCFF000AZI/@@download/ENCFF000AZI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from ENCFF000AZT fastq reads ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 910378914 Bradley Bernstein, Broad 5c6e60a3a1633fb822a131d0546fc359 https://www.encodeproject.org/files/ENCFF000AZT/@@download/ENCFF000AZT.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF001SVL bed broadPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 496987 Bradley Bernstein, Broad ca9adc117c790e03eac845bdceaf3419 https://www.encodeproject.org/files/ENCFF001SVL/@@download/ENCFF001SVL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity missing derived_from ENCFF346JZZ fastq reads ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 691302479 Bradley Bernstein, Broad 39e267d7413b342d4d1a9136dd074785 https://www.encodeproject.org/files/ENCFF346JZZ/@@download/ENCFF346JZZ.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF365JHC bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZT, ENCFF643CGH 536774164 ENCODE Processing Pipeline e45c99f2d5f7ba9569894b9cd0ea10bb https://www.encodeproject.org/files/ENCFF365JHC/@@download/ENCFF365JHC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF453ZBS bam unfiltered alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZT, ENCFF643CGH 1163936197 ENCODE Processing Pipeline 18a69c0136d43fa37c97911c48a56d4b https://www.encodeproject.org/files/ENCFF453ZBS/@@download/ENCFF453ZBS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF234VFU bam unfiltered alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF346JZZ, ENCFF643CGH 1000610633 ENCODE Processing Pipeline 9ff8562411b4c8882ab6223286bccc22 https://www.encodeproject.org/files/ENCFF234VFU/@@download/ENCFF234VFU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF992JEQ bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF346JZZ, ENCFF643CGH 660356703 ENCODE Processing Pipeline 6c3773b13c9c2d674569ffb337e1d3ac https://www.encodeproject.org/files/ENCFF992JEQ/@@download/ENCFF992JEQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF499WBJ bam unfiltered alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZT, ENCFF807MUK 1159260758 ENCODE Processing Pipeline 2750d6abb465b011996aadcf49f04b82 https://www.encodeproject.org/files/ENCFF499WBJ/@@download/ENCFF499WBJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF101FNO bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZT, ENCFF807MUK 537106113 ENCODE Processing Pipeline 19a02060a53ef26a6c8728492d627bdc https://www.encodeproject.org/files/ENCFF101FNO/@@download/ENCFF101FNO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF695GJS bam unfiltered alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF346JZZ, ENCFF807MUK 995347975 ENCODE Processing Pipeline 167b2d43c81b9b37251bd4fd23801401 https://www.encodeproject.org/files/ENCFF695GJS/@@download/ENCFF695GJS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF045IIX bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF346JZZ, ENCFF807MUK 660707762 ENCODE Processing Pipeline 24b6776e5bbe4ad4f258421cf6003d41 https://www.encodeproject.org/files/ENCFF045IIX/@@download/ENCFF045IIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF039JDM bigWig fold change over control ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 792115364 ENCODE Processing Pipeline 56dd5a56d66ea4e0b2cff0c3eb9c13cc https://www.encodeproject.org/files/ENCFF039JDM/@@download/ENCFF039JDM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF537JDG bigWig fold change over control ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF045IIX, ENCFF243MTV, ENCFF727XHW 1371980028 ENCODE Processing Pipeline 62dd681e8044e0e89e6aad8e55059697 https://www.encodeproject.org/files/ENCFF537JDG/@@download/ENCFF537JDG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF145FSB bigWig signal p-value ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF045IIX, ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 1878910570 ENCODE Processing Pipeline 45d68c4626a01b03bd079ed7fe15b2d0 https://www.encodeproject.org/files/ENCFF145FSB/@@download/ENCFF145FSB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF180QIK bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 5876513 ENCODE Processing Pipeline f89af0194b0ed044010408391e0aa0b2 https://www.encodeproject.org/files/ENCFF180QIK/@@download/ENCFF180QIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF771HQO bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF687NII 1026114 ENCODE Processing Pipeline 5302e17b4de621e6ce6f70c40aea7da0 https://www.encodeproject.org/files/ENCFF771HQO/@@download/ENCFF771HQO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF732CAP bigWig signal p-value ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF045IIX, ENCFF243MTV, ENCFF727XHW 1751588101 ENCODE Processing Pipeline 88d1570a451d3d9626cd3d9656c9a2af https://www.encodeproject.org/files/ENCFF732CAP/@@download/ENCFF732CAP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF102HLC bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF045IIX, ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 6905046 ENCODE Processing Pipeline 5de22fd682cda4a1d002375b26106137 https://www.encodeproject.org/files/ENCFF102HLC/@@download/ENCFF102HLC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF803MBG bigBed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF180QIK 13502788 ENCODE Processing Pipeline 1e4ef22f4c5641b3476cdf6c9830375d https://www.encodeproject.org/files/ENCFF803MBG/@@download/ENCFF803MBG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF103CHJ bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF045IIX, ENCFF243MTV, ENCFF727XHW 6344716 ENCODE Processing Pipeline e771a09e722493675ca74a63cde648ca https://www.encodeproject.org/files/ENCFF103CHJ/@@download/ENCFF103CHJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF614IYA bigBed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF103CHJ 13469942 ENCODE Processing Pipeline a1405fb33fbd45383e02023bf9d59ef9 https://www.encodeproject.org/files/ENCFF614IYA/@@download/ENCFF614IYA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF693WBR bigWig signal p-value ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 1801856037 ENCODE Processing Pipeline 3b02c6ee4d216fe7a15335176c561655 https://www.encodeproject.org/files/ENCFF693WBR/@@download/ENCFF693WBR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF174BBG bigWig fold change over control ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF045IIX, ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 1738469549 ENCODE Processing Pipeline 3b998cf437dec8af259eff8f578c37d9 https://www.encodeproject.org/files/ENCFF174BBG/@@download/ENCFF174BBG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF657PES bigBed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF102HLC 13445484 ENCODE Processing Pipeline f97d4eec7422b19890d9fef6cec0f050 https://www.encodeproject.org/files/ENCFF657PES/@@download/ENCFF657PES.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF687NII bed narrowPeak optimal idr thresholded peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF102HLC, ENCFF103CHJ, ENCFF180QIK 395597 ENCODE Processing Pipeline a4637b1ddc963d77f016a7ee2a675935 https://www.encodeproject.org/files/ENCFF687NII/@@download/ENCFF687NII.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF401PWV bigWig fold change over control ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF365JHC, ENCFF504ZFN 794191898 ENCODE Processing Pipeline e7a078282f4056abb7c93b936daccbcc https://www.encodeproject.org/files/ENCFF401PWV/@@download/ENCFF401PWV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF888QPY bigWig fold change over control ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF992JEQ 1371839248 ENCODE Processing Pipeline b1913d1535fb63ca50f2a659fbdc0542 https://www.encodeproject.org/files/ENCFF888QPY/@@download/ENCFF888QPY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF769FYM bigBed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF090OXS 10904960 ENCODE Processing Pipeline 941d52dfc6eb8c094b240d01fbc38a0c https://www.encodeproject.org/files/ENCFF769FYM/@@download/ENCFF769FYM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF665LYO bigBed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF433QVO 13399983 ENCODE Processing Pipeline 4a9ae81f4a3ddb98cb4b085eff30d460 https://www.encodeproject.org/files/ENCFF665LYO/@@download/ENCFF665LYO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF065GJL bigBed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF333MXH 13418149 ENCODE Processing Pipeline 472617bca223da16936f8712ca38b2ba https://www.encodeproject.org/files/ENCFF065GJL/@@download/ENCFF065GJL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF433QVO bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF992JEQ 6290916 ENCODE Processing Pipeline d4efe51ecca0abf0f2fe079437cab37c https://www.encodeproject.org/files/ENCFF433QVO/@@download/ENCFF433QVO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF983NHA bigWig signal p-value ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF365JHC, ENCFF504ZFN 1736239593 ENCODE Processing Pipeline fa3feedb63a183b150f17c59b60bf797 https://www.encodeproject.org/files/ENCFF983NHA/@@download/ENCFF983NHA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF935JRI bigWig fold change over control ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF365JHC, ENCFF504ZFN, ENCFF992JEQ 1731577604 ENCODE Processing Pipeline b19474403ffbc18065a867376c083c46 https://www.encodeproject.org/files/ENCFF935JRI/@@download/ENCFF935JRI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF090OXS bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF365JHC, ENCFF504ZFN 5545362 ENCODE Processing Pipeline f643f8b36d0f415a8be8d3bedbcae642 https://www.encodeproject.org/files/ENCFF090OXS/@@download/ENCFF090OXS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF305RRH bigWig signal p-value ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF992JEQ 1853442112 ENCODE Processing Pipeline fcbddfc29bb2079d3b3f2c0858234626 https://www.encodeproject.org/files/ENCFF305RRH/@@download/ENCFF305RRH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF378JYM bigWig signal p-value ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF365JHC, ENCFF504ZFN, ENCFF992JEQ 1918811198 ENCODE Processing Pipeline ff08c4d0206ac103c0851f537c00fcb0 https://www.encodeproject.org/files/ENCFF378JYM/@@download/ENCFF378JYM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF440BPE bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF651QOL 1021448 ENCODE Processing Pipeline 2ff7cbfdede7d44da1b922457cc44fa9 https://www.encodeproject.org/files/ENCFF440BPE/@@download/ENCFF440BPE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF333MXH bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF064DDT, ENCFF365JHC, ENCFF504ZFN, ENCFF992JEQ 6876352 ENCODE Processing Pipeline 85e7576a098a5dc62951bf0dd69498a5 https://www.encodeproject.org/files/ENCFF333MXH/@@download/ENCFF333MXH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF651QOL bed narrowPeak optimal idr thresholded peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF090OXS, ENCFF333MXH, ENCFF419RSJ, ENCFF433QVO 392849 ENCODE Processing Pipeline 00b5f4f2e35a700ec1521c51a7dcf1eb https://www.encodeproject.org/files/ENCFF651QOL/@@download/ENCFF651QOL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000OSV bigBed broadPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UCG 456168 Richard Myers, HAIB 2056230c30c1fa534fd0fa7fef791701 https://www.encodeproject.org/files/ENCFF000OSV/@@download/ENCFF000OSV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OSW bigBed broadPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UCH 202061 Richard Myers, HAIB a3db2ef21c487ed5046b7fcf7f4780ed https://www.encodeproject.org/files/ENCFF000OSW/@@download/ENCFF000OSW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OSY bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OTG 713450502 Richard Myers, HAIB 4516d0b9989b407bbbc63fb776620daf https://www.encodeproject.org/files/ENCFF000OSY/@@download/ENCFF000OSY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OSZ bigWig raw signal ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 7259145 Richard Myers, HAIB 3c179105dce5c80edd440f1d11cdc02f https://www.encodeproject.org/files/ENCFF000OSZ/@@download/ENCFF000OSZ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OTA bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OTJ 821526589 Richard Myers, HAIB c90bcbff66481a8affd9e0ffe95be976 https://www.encodeproject.org/files/ENCFF000OTA/@@download/ENCFF000OTA.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OTB bigWig raw signal ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 4281132 Richard Myers, HAIB 5611043b224e5e35f65699196aa4b094 https://www.encodeproject.org/files/ENCFF000OTB/@@download/ENCFF000OTB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000OTG fastq reads ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 688119781 Richard Myers, HAIB 92385d00eaf98e0d9e743b2162ee7dbb https://www.encodeproject.org/files/ENCFF000OTG/@@download/ENCFF000OTG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OTJ fastq reads ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 900184322 Richard Myers, HAIB 389c7ea0d039c5f4a1f020945f02f9da https://www.encodeproject.org/files/ENCFF000OTJ/@@download/ENCFF000OTJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001UCG bed broadPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 249070 Richard Myers, HAIB 1996552e6305ea2908cba26b4ed38919 https://www.encodeproject.org/files/ENCFF001UCG/@@download/ENCFF001UCG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001UCH bed broadPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 89033 Richard Myers, HAIB 0754af5e6ddf8fc746f462576473fa67 https://www.encodeproject.org/files/ENCFF001UCH/@@download/ENCFF001UCH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJI bed narrowPeak optimal idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 172732 ENCODE Consortium Analysis Working Group b61359273fea3d424d3f5c67bf8bde7c https://www.encodeproject.org/files/ENCFF002CJI/@@download/ENCFF002CJI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF115UDH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJI 368656 ENCODE Consortium 20b3ff6a73637d4789f113db14d75223 https://www.encodeproject.org/files/ENCFF115UDH/@@download/ENCFF115UDH.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF789OGM bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTG, ENCFF643CGH 539554730 ENCODE Processing Pipeline 8225bfb8ae576ed700c16205fc03aee5 https://www.encodeproject.org/files/ENCFF789OGM/@@download/ENCFF789OGM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF785GXZ bam unfiltered alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTG, ENCFF643CGH 890299274 ENCODE Processing Pipeline f76e55ce2b3fe340ee02a8fe312294ea https://www.encodeproject.org/files/ENCFF785GXZ/@@download/ENCFF785GXZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF967DJP bam unfiltered alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTJ, ENCFF643CGH 1154517853 ENCODE Processing Pipeline c9a6b2d13b8d926e182c2050307d16bb https://www.encodeproject.org/files/ENCFF967DJP/@@download/ENCFF967DJP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF256XXT bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTJ, ENCFF643CGH 640281325 ENCODE Processing Pipeline 0297005a2213e6cb3f0ecd7554d3a3ea https://www.encodeproject.org/files/ENCFF256XXT/@@download/ENCFF256XXT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF229BBD bam unfiltered alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTG, ENCFF807MUK 887497451 ENCODE Processing Pipeline 80680f4ebbcfb7ac95f2bf9ea6993528 https://www.encodeproject.org/files/ENCFF229BBD/@@download/ENCFF229BBD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF036SLY bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTG, ENCFF807MUK 540000768 ENCODE Processing Pipeline 1c9a913585ae4a2dfcb4e3c2b19ce673 https://www.encodeproject.org/files/ENCFF036SLY/@@download/ENCFF036SLY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF870KIH bam unfiltered alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTJ, ENCFF807MUK 1150231153 ENCODE Processing Pipeline 3eb1dbfb72e7d2e2aca7d890a6c5f55e https://www.encodeproject.org/files/ENCFF870KIH/@@download/ENCFF870KIH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF655DGW bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTJ, ENCFF807MUK 640669427 ENCODE Processing Pipeline b915f87e4f63b986545fee9e47b2fe4b https://www.encodeproject.org/files/ENCFF655DGW/@@download/ENCFF655DGW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF978XDR bigWig signal p-value ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF789OGM, ENCFF948LKH 373920360 ENCODE Processing Pipeline b2bd6ea77ec0a51d8875e15388f23e2f https://www.encodeproject.org/files/ENCFF978XDR/@@download/ENCFF978XDR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF677NOB bigWig signal p-value ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF256XXT, ENCFF948LKH 382403982 ENCODE Processing Pipeline b562c56d8214659e4b926807854ed169 https://www.encodeproject.org/files/ENCFF677NOB/@@download/ENCFF677NOB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF503MAL bigWig fold change over control ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF256XXT, ENCFF948LKH 294479432 ENCODE Processing Pipeline 35179cfaea03f52e0c38e9ff52c114ad https://www.encodeproject.org/files/ENCFF503MAL/@@download/ENCFF503MAL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF391GAP bigWig signal p-value ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF256XXT, ENCFF789OGM, ENCFF948LKH 539284123 ENCODE Processing Pipeline 9024ee9180d213f515dbc01241ba2508 https://www.encodeproject.org/files/ENCFF391GAP/@@download/ENCFF391GAP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF765MSW bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF789OGM, ENCFF948LKH 4975211 ENCODE Processing Pipeline 36010b7f7ddc60df26e3a0f34136fa0d https://www.encodeproject.org/files/ENCFF765MSW/@@download/ENCFF765MSW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF311YLU bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF256XXT, ENCFF789OGM, ENCFF948LKH 5216903 ENCODE Processing Pipeline 2faaca3e048ce70b4f622f1be6cf7fe5 https://www.encodeproject.org/files/ENCFF311YLU/@@download/ENCFF311YLU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF571JNW bigWig fold change over control ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF256XXT, ENCFF789OGM, ENCFF948LKH 484465781 ENCODE Processing Pipeline 5452aabe4742816f9019782ed850bb15 https://www.encodeproject.org/files/ENCFF571JNW/@@download/ENCFF571JNW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF597PUI bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF256XXT, ENCFF948LKH 3955836 ENCODE Processing Pipeline f5359ecf2927156164bc5549583fc6bb https://www.encodeproject.org/files/ENCFF597PUI/@@download/ENCFF597PUI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF493PHE bigBed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF597PUI 8356000 ENCODE Processing Pipeline b3eb83ea0e803fe37a88b8d0b4bf4e87 https://www.encodeproject.org/files/ENCFF493PHE/@@download/ENCFF493PHE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF080NJX bigWig fold change over control ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF789OGM, ENCFF948LKH 251706357 ENCODE Processing Pipeline 325474e27f611a14f1a587333dd05f86 https://www.encodeproject.org/files/ENCFF080NJX/@@download/ENCFF080NJX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF528MBF bigBed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF765MSW 12845819 ENCODE Processing Pipeline 64830f0e639ca35e26783ac724aa76d4 https://www.encodeproject.org/files/ENCFF528MBF/@@download/ENCFF528MBF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF905VZD bed narrowPeak optimal idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311YLU, ENCFF419RSJ, ENCFF597PUI, ENCFF765MSW 244137 ENCODE Processing Pipeline 9df45f832a076cb13dc3852def56f03c https://www.encodeproject.org/files/ENCFF905VZD/@@download/ENCFF905VZD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF280FJD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF905VZD 469613 ENCODE Processing Pipeline cabe874308877d1baf1c21688898073b https://www.encodeproject.org/files/ENCFF280FJD/@@download/ENCFF280FJD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF818XLY bigBed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311YLU 11236874 ENCODE Processing Pipeline a5a657d9cddf213799eb508944fe9cfb https://www.encodeproject.org/files/ENCFF818XLY/@@download/ENCFF818XLY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF968ZBM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF963KTA 338901 ENCODE Processing Pipeline d1dbab14cd587076e8a217c95d972003 https://www.encodeproject.org/files/ENCFF968ZBM/@@download/ENCFF968ZBM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF963KTA bed narrowPeak conservative idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF311YLU, ENCFF419RSJ, ENCFF597PUI, ENCFF765MSW 154436 ENCODE Processing Pipeline 9c22531b74ac063e151f3d96d41bbbbf https://www.encodeproject.org/files/ENCFF963KTA/@@download/ENCFF963KTA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF633HCH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF282KFJ 344783 ENCODE Processing Pipeline 69fe5437cfc62c89c6539ee5dee822f7 https://www.encodeproject.org/files/ENCFF633HCH/@@download/ENCFF633HCH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF928XFB bigWig signal p-value ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF655DGW 476737888 ENCODE Processing Pipeline 1996677c2c16e35de88e0ed9c20db89e https://www.encodeproject.org/files/ENCFF928XFB/@@download/ENCFF928XFB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF490MZG bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF655DGW 4001821 ENCODE Processing Pipeline 5300bf223133f6471202a8af9c24f8eb https://www.encodeproject.org/files/ENCFF490MZG/@@download/ENCFF490MZG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF872HTA bigWig signal p-value ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF036SLY, ENCFF356DXM 384930303 ENCODE Processing Pipeline 7572299bd0af34d30d62e5c9bc575944 https://www.encodeproject.org/files/ENCFF872HTA/@@download/ENCFF872HTA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF616TYF bigWig signal p-value ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036SLY, ENCFF356DXM, ENCFF655DGW 539386409 ENCODE Processing Pipeline 2884985543648351b9908fe9289832fe https://www.encodeproject.org/files/ENCFF616TYF/@@download/ENCFF616TYF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF247OQT bigWig fold change over control ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036SLY, ENCFF356DXM, ENCFF655DGW 483432339 ENCODE Processing Pipeline 8d2922edeff7b4a0caaa3165095eecfe https://www.encodeproject.org/files/ENCFF247OQT/@@download/ENCFF247OQT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF605LQA bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF036SLY, ENCFF356DXM 5017529 ENCODE Processing Pipeline 4e064528d8926b37e685fb41aad4e760 https://www.encodeproject.org/files/ENCFF605LQA/@@download/ENCFF605LQA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF347PIM bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF036SLY, ENCFF356DXM, ENCFF655DGW 5289904 ENCODE Processing Pipeline 2f5d61f3ed078e03511f481b5e245408 https://www.encodeproject.org/files/ENCFF347PIM/@@download/ENCFF347PIM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF715KID bigBed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF605LQA 12899253 ENCODE Processing Pipeline 169967774018002cdfe14ccc586a9428 https://www.encodeproject.org/files/ENCFF715KID/@@download/ENCFF715KID.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF400MZJ bigBed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF490MZG 8461003 ENCODE Processing Pipeline 5fa143800d16cab76185fb00fee43bf5 https://www.encodeproject.org/files/ENCFF400MZJ/@@download/ENCFF400MZJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF816ZQP bigBed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF347PIM 11277408 ENCODE Processing Pipeline ce02c51aae90307f2b3b8025c4ed3280 https://www.encodeproject.org/files/ENCFF816ZQP/@@download/ENCFF816ZQP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF282KFJ bed narrowPeak conservative idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF347PIM, ENCFF490MZG, ENCFF605LQA 158854 ENCODE Processing Pipeline edecdae855fc53530db2301769962714 https://www.encodeproject.org/files/ENCFF282KFJ/@@download/ENCFF282KFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF014FWM bigWig fold change over control ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF655DGW 292712690 ENCODE Processing Pipeline 8ef1cf496967d75aa610a993f607cef0 https://www.encodeproject.org/files/ENCFF014FWM/@@download/ENCFF014FWM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF820OMK bed narrowPeak optimal idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF347PIM, ENCFF490MZG, ENCFF605LQA 255908 ENCODE Processing Pipeline 23a7613b25af81f5dbf2037400bca991 https://www.encodeproject.org/files/ENCFF820OMK/@@download/ENCFF820OMK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF120CJO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF820OMK 485237 ENCODE Processing Pipeline 7b94d1810878816424e24233e5f72dbc https://www.encodeproject.org/files/ENCFF120CJO/@@download/ENCFF120CJO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF484JJO bigWig fold change over control ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF036SLY, ENCFF356DXM 251687429 ENCODE Processing Pipeline b07ce538545d7aaa84039efda3ac10c1 https://www.encodeproject.org/files/ENCFF484JJO/@@download/ENCFF484JJO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000NHB bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NHP 264375859 Richard Myers, HAIB ffadccbc691b5acd2c061feb3dacb9f9 https://www.encodeproject.org/files/ENCFF000NHB/@@download/ENCFF000NHB.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NHC bigBed broadPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TTP 994381 Richard Myers, HAIB 1ae7d43c04c3fde8f189a8c1a384117a https://www.encodeproject.org/files/ENCFF000NHC/@@download/ENCFF000NHC.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NHD bigBed broadPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TTQ 885970 Richard Myers, HAIB 99b2ea969089e07f2a779a0b4ecff19b https://www.encodeproject.org/files/ENCFF000NHD/@@download/ENCFF000NHD.bigBed hg19 archived low read length biological replicates with identical biosample ENCFF000NHE bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000NHM 687870087 Richard Myers, HAIB 33cba81ee76d227e6022905dcd099d28 https://www.encodeproject.org/files/ENCFF000NHE/@@download/ENCFF000NHE.bam hg19 archived low read length biological replicates with identical biosample ENCFF000NHF bigWig raw signal ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 1 44095376 Richard Myers, HAIB 895e35673bb2cc49252df5612ef965fc https://www.encodeproject.org/files/ENCFF000NHF/@@download/ENCFF000NHF.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000NHH bigWig raw signal ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 1 48283919 Richard Myers, HAIB 085a04bd603dd60667cd20ab1c689953 https://www.encodeproject.org/files/ENCFF000NHH/@@download/ENCFF000NHH.bigWig hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF000NHM fastq reads ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 1391072997 Richard Myers, HAIB 5c55d2f40b4e848a651394270a66b201 https://www.encodeproject.org/files/ENCFF000NHM/@@download/ENCFF000NHM.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF000NHP fastq reads ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1960945915 Richard Myers, HAIB 0b8a11a9bf9c2745a58741778226617f https://www.encodeproject.org/files/ENCFF000NHP/@@download/ENCFF000NHP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NGH/ released low read length biological replicates with identical biosample ENCFF001TTP bed broadPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 1 552020 Richard Myers, HAIB b3cc229e1a48fa258ff5f7b81d25e593 https://www.encodeproject.org/files/ENCFF001TTP/@@download/ENCFF001TTP.bed.gz hg19 archived low read length biological replicates with identical biosample, missing derived_from ENCFF001TTQ bed broadPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 1 481272 Richard Myers, HAIB 1f273bd3ca7f370fd8e569885110e8d4 https://www.encodeproject.org/files/ENCFF001TTQ/@@download/ENCFF001TTQ.bed.gz hg19 archived low read length missing derived_from, biological replicates with identical biosample ENCFF498BNK bam unfiltered alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHM, ENCFF643CGH 1665155134 ENCODE Processing Pipeline 025502ab877b0d8c9f5dd80e712cffa8 https://www.encodeproject.org/files/ENCFF498BNK/@@download/ENCFF498BNK.bam GRCh38 released low read length biological replicates with identical biosample ENCFF415SIE bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHM, ENCFF643CGH 1012420132 ENCODE Processing Pipeline 9cbf074c7db96293bf987a5771626f43 https://www.encodeproject.org/files/ENCFF415SIE/@@download/ENCFF415SIE.bam GRCh38 released low read length biological replicates with identical biosample ENCFF916AFL bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHP, ENCFF643CGH 1369436583 ENCODE Processing Pipeline 4dc725f2761c8ab8dff44947ce89e93e https://www.encodeproject.org/files/ENCFF916AFL/@@download/ENCFF916AFL.bam GRCh38 released low read length biological replicates with identical biosample ENCFF659LAW bam unfiltered alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHP, ENCFF643CGH 2141909715 ENCODE Processing Pipeline 584f04b3eb75d2e0b08bc26505ff58c6 https://www.encodeproject.org/files/ENCFF659LAW/@@download/ENCFF659LAW.bam GRCh38 released low read length biological replicates with identical biosample ENCFF566LGK bam unfiltered alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHM, ENCFF807MUK 1659627883 ENCODE Processing Pipeline 8829b6d90cf3028ed0aeca260e9f59df https://www.encodeproject.org/files/ENCFF566LGK/@@download/ENCFF566LGK.bam hg19 released low read length biological replicates with identical biosample ENCFF309RPK bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHM, ENCFF807MUK 1012542744 ENCODE Processing Pipeline 78c2861bc59cefeb82833224adbedb3f https://www.encodeproject.org/files/ENCFF309RPK/@@download/ENCFF309RPK.bam hg19 released low read length biological replicates with identical biosample ENCFF453WTN bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHP, ENCFF807MUK 1369465419 ENCODE Processing Pipeline 852f3b35c115e60d74f35b28d766cde7 https://www.encodeproject.org/files/ENCFF453WTN/@@download/ENCFF453WTN.bam hg19 released low read length biological replicates with identical biosample ENCFF395QYJ bam unfiltered alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHP, ENCFF807MUK 2134860993 ENCODE Processing Pipeline 5734c87fe0e2e58a3544c5140312f9e6 https://www.encodeproject.org/files/ENCFF395QYJ/@@download/ENCFF395QYJ.bam hg19 released low read length biological replicates with identical biosample ENCFF060QXT bigWig signal p-value ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF415SIE, ENCFF656HEF 621373589 ENCODE Processing Pipeline d71534721c5edf9ff94889cbcf336bd7 https://www.encodeproject.org/files/ENCFF060QXT/@@download/ENCFF060QXT.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF006NOU bigWig signal p-value ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF916AFL 742183054 ENCODE Processing Pipeline d57091397006efe2367b9964603d97e8 https://www.encodeproject.org/files/ENCFF006NOU/@@download/ENCFF006NOU.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF989LTI bigWig signal p-value ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF415SIE, ENCFF656HEF, ENCFF916AFL 831480574 ENCODE Processing Pipeline d2324d23f1fb591d73f1621ec60c6a51 https://www.encodeproject.org/files/ENCFF989LTI/@@download/ENCFF989LTI.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF285YRP bigWig fold change over control ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF916AFL 711454313 ENCODE Processing Pipeline abaf6ae61d511f02aab5726f40cacc53 https://www.encodeproject.org/files/ENCFF285YRP/@@download/ENCFF285YRP.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF041KIM bigBed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF610EDQ 13149041 ENCODE Processing Pipeline 0305532bccdd3c58edf804fae01a84d6 https://www.encodeproject.org/files/ENCFF041KIM/@@download/ENCFF041KIM.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF476BDL bigWig fold change over control ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF415SIE, ENCFF656HEF, ENCFF916AFL 1005724400 ENCODE Processing Pipeline fb6cd03aac99e9a74867ac15a627a0a2 https://www.encodeproject.org/files/ENCFF476BDL/@@download/ENCFF476BDL.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF727NIO bigWig fold change over control ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF415SIE, ENCFF656HEF 541356904 ENCODE Processing Pipeline a8fc5bc92c4b53ac6277875e835e2cc6 https://www.encodeproject.org/files/ENCFF727NIO/@@download/ENCFF727NIO.bigWig GRCh38 released low read length biological replicates with identical biosample ENCFF904RCL bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF154NAC 1368507 ENCODE Processing Pipeline af7be895a8aa50458d770395976b711b https://www.encodeproject.org/files/ENCFF904RCL/@@download/ENCFF904RCL.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF050VEY bigBed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF876WDK 13098483 ENCODE Processing Pipeline 883c5b4536f528944d28e3b37eebb627 https://www.encodeproject.org/files/ENCFF050VEY/@@download/ENCFF050VEY.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF186GQS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF404OSB 1386463 ENCODE Processing Pipeline 938219054b57bab58dfdd60594d86fe0 https://www.encodeproject.org/files/ENCFF186GQS/@@download/ENCFF186GQS.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF876WDK bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF415SIE, ENCFF656HEF 6286361 ENCODE Processing Pipeline 6096775da84525c353e7a3b9b932b2ff https://www.encodeproject.org/files/ENCFF876WDK/@@download/ENCFF876WDK.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF994BNZ bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF656HEF, ENCFF916AFL 6466312 ENCODE Processing Pipeline 98d005b835186ca62cf6497fc40b69f1 https://www.encodeproject.org/files/ENCFF994BNZ/@@download/ENCFF994BNZ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF610EDQ bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF415SIE, ENCFF656HEF, ENCFF916AFL 6897731 ENCODE Processing Pipeline 855d2463a90aa54375e78378c3a6d14e https://www.encodeproject.org/files/ENCFF610EDQ/@@download/ENCFF610EDQ.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF330WDU bigBed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF994BNZ 13139341 ENCODE Processing Pipeline 188d187c31f55ebb1d1fdc1d81b110ca https://www.encodeproject.org/files/ENCFF330WDU/@@download/ENCFF330WDU.bigBed GRCh38 released low read length biological replicates with identical biosample ENCFF154NAC bed narrowPeak conservative idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF610EDQ, ENCFF876WDK, ENCFF994BNZ 740057 ENCODE Processing Pipeline 8abc5675916c56957895fa4dd4955171 https://www.encodeproject.org/files/ENCFF154NAC/@@download/ENCFF154NAC.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF404OSB bed narrowPeak optimal idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF419RSJ, ENCFF610EDQ, ENCFF876WDK, ENCFF994BNZ 752376 ENCODE Processing Pipeline aecdec7b31fc9db30b11613945fec2cf https://www.encodeproject.org/files/ENCFF404OSB/@@download/ENCFF404OSB.bed.gz GRCh38 released low read length biological replicates with identical biosample ENCFF980ABK bigWig fold change over control ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF309RPK, ENCFF864UEQ 554249199 ENCODE Processing Pipeline 33009480d99bcf18b204cb742cc37dfe https://www.encodeproject.org/files/ENCFF980ABK/@@download/ENCFF980ABK.bigWig hg19 released low read length biological replicates with identical biosample ENCFF303CWH bigWig signal p-value ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF309RPK, ENCFF453WTN, ENCFF864UEQ 827357524 ENCODE Processing Pipeline 707f51df5355757701b7abbadfa86efe https://www.encodeproject.org/files/ENCFF303CWH/@@download/ENCFF303CWH.bigWig hg19 released low read length biological replicates with identical biosample ENCFF944VLN bigWig signal p-value ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF309RPK, ENCFF864UEQ 623674709 ENCODE Processing Pipeline 957e66d4871f83627af24e4274c1fda7 https://www.encodeproject.org/files/ENCFF944VLN/@@download/ENCFF944VLN.bigWig hg19 released low read length biological replicates with identical biosample ENCFF033KBO bigWig signal p-value ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF453WTN, ENCFF864UEQ 739842972 ENCODE Processing Pipeline 26e34b645794a21a578e3f53dccf674d https://www.encodeproject.org/files/ENCFF033KBO/@@download/ENCFF033KBO.bigWig hg19 released low read length biological replicates with identical biosample ENCFF715NIC bigWig fold change over control ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF309RPK, ENCFF453WTN, ENCFF864UEQ 1003288856 ENCODE Processing Pipeline ceb8b3fe6a86f7c8505a52505aaf3cd1 https://www.encodeproject.org/files/ENCFF715NIC/@@download/ENCFF715NIC.bigWig hg19 released low read length biological replicates with identical biosample ENCFF342ZVY bigWig fold change over control ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF453WTN, ENCFF864UEQ 692814908 ENCODE Processing Pipeline 94a666f83f60c6e8481ae5e730d88ecd https://www.encodeproject.org/files/ENCFF342ZVY/@@download/ENCFF342ZVY.bigWig hg19 released low read length biological replicates with identical biosample ENCFF753PAD bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF453WTN, ENCFF864UEQ 6522150 ENCODE Processing Pipeline a07a80ab4d763e7203684d5de4a55473 https://www.encodeproject.org/files/ENCFF753PAD/@@download/ENCFF753PAD.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF595NXZ bigBed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF075ZQI 13096788 ENCODE Processing Pipeline 4182231f4f55778b6d50d538dc223148 https://www.encodeproject.org/files/ENCFF595NXZ/@@download/ENCFF595NXZ.bigBed hg19 released low read length biological replicates with identical biosample ENCFF701ZUX bed narrowPeak conservative idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF075ZQI, ENCFF753PAD, ENCFF831GEW 740384 ENCODE Processing Pipeline dc1c200a1bceaf2fa64733fdbb60b92b https://www.encodeproject.org/files/ENCFF701ZUX/@@download/ENCFF701ZUX.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF848WKI bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF348RKC 1396930 ENCODE Processing Pipeline 3268089a34ad26a2fee3b5fa447dd8e7 https://www.encodeproject.org/files/ENCFF848WKI/@@download/ENCFF848WKI.bigBed hg19 released low read length biological replicates with identical biosample ENCFF075ZQI bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF309RPK, ENCFF864UEQ 6285587 ENCODE Processing Pipeline 338ed28b922bdea7611995424e4cd1af https://www.encodeproject.org/files/ENCFF075ZQI/@@download/ENCFF075ZQI.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF831GEW bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF309RPK, ENCFF453WTN, ENCFF864UEQ 6896217 ENCODE Processing Pipeline f180cbe3c3bcd3392f3acd13de8aa5bc https://www.encodeproject.org/files/ENCFF831GEW/@@download/ENCFF831GEW.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF580ZSG bigBed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF753PAD 13205020 ENCODE Processing Pipeline 45335b4650a667d126516f9daf629480 https://www.encodeproject.org/files/ENCFF580ZSG/@@download/ENCFF580ZSG.bigBed hg19 released low read length biological replicates with identical biosample ENCFF840XKE bigBed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF831GEW 13147083 ENCODE Processing Pipeline 95bbace13d64f696a3bbb6cff01675be https://www.encodeproject.org/files/ENCFF840XKE/@@download/ENCFF840XKE.bigBed hg19 released low read length biological replicates with identical biosample ENCFF231LZO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF701ZUX 1367286 ENCODE Processing Pipeline 77637089ae212f9ee7c7d04cf16a5da3 https://www.encodeproject.org/files/ENCFF231LZO/@@download/ENCFF231LZO.bigBed hg19 released low read length biological replicates with identical biosample ENCFF348RKC bed narrowPeak optimal idr thresholded peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF075ZQI, ENCFF753PAD, ENCFF831GEW 761123 ENCODE Processing Pipeline e5f585bcfb86b66fb3b638e3e0a04b73 https://www.encodeproject.org/files/ENCFF348RKC/@@download/ENCFF348RKC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF000QBV bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QCH 929318144 Richard Myers, HAIB 1ac6a90d503c9f43ffacc3e89cef2018 https://www.encodeproject.org/files/ENCFF000QBV/@@download/ENCFF000QBV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QBW bigBed broadPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKJ 147644 Richard Myers, HAIB 50a8b82b5b28db9a749615a33e5ead74 https://www.encodeproject.org/files/ENCFF000QBW/@@download/ENCFF000QBW.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QBX bigBed broadPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UKK 99120 Richard Myers, HAIB 3eeae5cbd93a9f12899496e575ae11a5 https://www.encodeproject.org/files/ENCFF000QBX/@@download/ENCFF000QBX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QBY bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QCI 939378828 Richard Myers, HAIB a266c60190e675da7486c198fb399731 https://www.encodeproject.org/files/ENCFF000QBY/@@download/ENCFF000QBY.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QCA bigWig raw signal ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 9471778 Richard Myers, HAIB 1eecece538266147deeccdbb6b97b2b1 https://www.encodeproject.org/files/ENCFF000QCA/@@download/ENCFF000QCA.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QCB bigWig raw signal ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 14353153 Richard Myers, HAIB 4ee965248ae40abc2a102298abaf37b5 https://www.encodeproject.org/files/ENCFF000QCB/@@download/ENCFF000QCB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QCH fastq reads ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 803468681 Richard Myers, HAIB 1fe2435122aa9395cf49bdc61c49a2ed https://www.encodeproject.org/files/ENCFF000QCH/@@download/ENCFF000QCH.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000QCI fastq reads ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 927569797 Richard Myers, HAIB fd076189e618f7512b0bd0a4bbaf437c https://www.encodeproject.org/files/ENCFF000QCI/@@download/ENCFF000QCI.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF001UKJ bed broadPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 54276 Richard Myers, HAIB 385c3b1e1b57faeff565b0cebb7e4638 https://www.encodeproject.org/files/ENCFF001UKJ/@@download/ENCFF001UKJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth missing control alignments ENCFF001UKK bed broadPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36858 Richard Myers, HAIB 065c8bd750bdd207882bb6023e2930d1 https://www.encodeproject.org/files/ENCFF001UKK/@@download/ENCFF001UKK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF002CMD bed narrowPeak optimal idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 131373 ENCODE Consortium Analysis Working Group 86f7faf8431745bababf549e8455935e https://www.encodeproject.org/files/ENCFF002CMD/@@download/ENCFF002CMD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF874UPP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMD 316067 ENCODE Consortium d1c17137874e0c15d5eeed78f7661eca https://www.encodeproject.org/files/ENCFF874UPP/@@download/ENCFF874UPP.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF913CDO bam unfiltered alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCH, ENCFF643CGH 1138271473 ENCODE Processing Pipeline c250dfe5e897156f62be16b1e396cd2b https://www.encodeproject.org/files/ENCFF913CDO/@@download/ENCFF913CDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF850FRG bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCI, ENCFF643CGH 552219646 ENCODE Processing Pipeline 0dc27eaceb709b62302b71dc68fa45a6 https://www.encodeproject.org/files/ENCFF850FRG/@@download/ENCFF850FRG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF401BQM bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCH, ENCFF643CGH 670034925 ENCODE Processing Pipeline 8c1cd145a568534df20e1a7f327813fa https://www.encodeproject.org/files/ENCFF401BQM/@@download/ENCFF401BQM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF573SUC bam unfiltered alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCI, ENCFF643CGH 1118480056 ENCODE Processing Pipeline cc91354d82562aa351232eecf99b6dda https://www.encodeproject.org/files/ENCFF573SUC/@@download/ENCFF573SUC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF773RUT bam unfiltered alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCI, ENCFF807MUK 1116294733 ENCODE Processing Pipeline a0256c6b2cf63603cfcfd82a5f84a59a https://www.encodeproject.org/files/ENCFF773RUT/@@download/ENCFF773RUT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF037JQU bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCI, ENCFF807MUK 552548472 ENCODE Processing Pipeline d0955d8d02d49f9673794d0d352e6997 https://www.encodeproject.org/files/ENCFF037JQU/@@download/ENCFF037JQU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF700OGN bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCH, ENCFF807MUK 670422920 ENCODE Processing Pipeline cfe483c267d3277c8da141e6e9d022bf https://www.encodeproject.org/files/ENCFF700OGN/@@download/ENCFF700OGN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF893HCG bam unfiltered alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCH, ENCFF807MUK 1134640809 ENCODE Processing Pipeline e94d259dc7c64cee03689126a6101300 https://www.encodeproject.org/files/ENCFF893HCG/@@download/ENCFF893HCG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF669MIP bigWig signal p-value ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401BQM 187738185 ENCODE Processing Pipeline 2602fc6813343908f10750826b7a1527 https://www.encodeproject.org/files/ENCFF669MIP/@@download/ENCFF669MIP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF852UFU bigWig signal p-value ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF850FRG 207220442 ENCODE Processing Pipeline 82c62e018d0a3feeb8424ec8d450cccd https://www.encodeproject.org/files/ENCFF852UFU/@@download/ENCFF852UFU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF103BUT bigWig signal p-value ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401BQM, ENCFF850FRG 193232655 ENCODE Processing Pipeline 1c2cd14e575898deecbc30b7efcc715b https://www.encodeproject.org/files/ENCFF103BUT/@@download/ENCFF103BUT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF086VZQ bigWig fold change over control ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401BQM 288713465 ENCODE Processing Pipeline 7c60db026e7034a2a9838707cd5689d5 https://www.encodeproject.org/files/ENCFF086VZQ/@@download/ENCFF086VZQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF396TQD bigWig fold change over control ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF850FRG 215926903 ENCODE Processing Pipeline fa6092b4a63572b7db120689f6b112c4 https://www.encodeproject.org/files/ENCFF396TQD/@@download/ENCFF396TQD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF072MKT bigWig fold change over control ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401BQM, ENCFF850FRG 457373805 ENCODE Processing Pipeline d2212d8930210ac63e01cd7f5d7079c6 https://www.encodeproject.org/files/ENCFF072MKT/@@download/ENCFF072MKT.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF862SVA bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF401BQM, ENCFF850FRG 4334858 ENCODE Processing Pipeline 3498eb36e5e5745bbec797ed1ea4320d https://www.encodeproject.org/files/ENCFF862SVA/@@download/ENCFF862SVA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF190IHG bed narrowPeak conservative idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184QHH, ENCFF419RSJ, ENCFF862SVA, ENCFF894NFM 16950 ENCODE Processing Pipeline 15ab24e07bb44b0eb0172d59308cb5f2 https://www.encodeproject.org/files/ENCFF190IHG/@@download/ENCFF190IHG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF184QHH bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF850FRG 178380 ENCODE Processing Pipeline d35d70f9aa74853e1f345537054d9f28 https://www.encodeproject.org/files/ENCFF184QHH/@@download/ENCFF184QHH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF894NFM bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401BQM 128973 ENCODE Processing Pipeline 4b35f34c99006cc3973d8555e0f4eed1 https://www.encodeproject.org/files/ENCFF894NFM/@@download/ENCFF894NFM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF103BVY bigBed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF894NFM 294515 ENCODE Processing Pipeline 73105cb88df513d1e79bae74c1c8c7b4 https://www.encodeproject.org/files/ENCFF103BVY/@@download/ENCFF103BVY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF950NDS bigBed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF862SVA 10533388 ENCODE Processing Pipeline 1c88f0cb444c80504e8a1ebe746ab353 https://www.encodeproject.org/files/ENCFF950NDS/@@download/ENCFF950NDS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF481IRF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF190IHG 66789 ENCODE Processing Pipeline 91b1c06771934e0dbc76d1083470f0b3 https://www.encodeproject.org/files/ENCFF481IRF/@@download/ENCFF481IRF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF556HYW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF310SMW 89335 ENCODE Processing Pipeline f3a4e4678d20c1c250659a3b0f208f97 https://www.encodeproject.org/files/ENCFF556HYW/@@download/ENCFF556HYW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF310SMW bed narrowPeak optimal idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF184QHH, ENCFF419RSJ, ENCFF862SVA, ENCFF894NFM 23534 ENCODE Processing Pipeline e967915ab5610d1d6ed4def309ca49c1 https://www.encodeproject.org/files/ENCFF310SMW/@@download/ENCFF310SMW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF177RIM bigBed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF184QHH 452850 ENCODE Processing Pipeline e63c082da332c38b93a5a7d625308427 https://www.encodeproject.org/files/ENCFF177RIM/@@download/ENCFF177RIM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF057ZQD bigWig signal p-value ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF700OGN, ENCFF750MIM 186963219 ENCODE Processing Pipeline 5e02b06548d90f2a9c5ace3789c59adc https://www.encodeproject.org/files/ENCFF057ZQD/@@download/ENCFF057ZQD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF329OJL bigWig fold change over control ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF700OGN, ENCFF750MIM 286534797 ENCODE Processing Pipeline f7d02bfce136b436ab7adb9a74d1cf70 https://www.encodeproject.org/files/ENCFF329OJL/@@download/ENCFF329OJL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF730JPK bigWig signal p-value ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF037JQU, ENCFF750MIM 207419607 ENCODE Processing Pipeline f034b0451aa241dccd0eaf70a0422397 https://www.encodeproject.org/files/ENCFF730JPK/@@download/ENCFF730JPK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF333ZWG bigWig signal p-value ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037JQU, ENCFF700OGN, ENCFF750MIM 193318398 ENCODE Processing Pipeline f9c69f8ed33fe5cad7eed6bf76f1a314 https://www.encodeproject.org/files/ENCFF333ZWG/@@download/ENCFF333ZWG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF329GXM bigWig fold change over control ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF037JQU, ENCFF750MIM 217714812 ENCODE Processing Pipeline 36a1126159b5a91233f743eefd8953ec https://www.encodeproject.org/files/ENCFF329GXM/@@download/ENCFF329GXM.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF479KSD bigWig fold change over control ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037JQU, ENCFF700OGN, ENCFF750MIM 451171444 ENCODE Processing Pipeline a77ab3a94abea1f473481d1aee61b500 https://www.encodeproject.org/files/ENCFF479KSD/@@download/ENCFF479KSD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF825VQR bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF037JQU, ENCFF750MIM 179486 ENCODE Processing Pipeline 8c675139cf606e34fb00e7098b1ea42c https://www.encodeproject.org/files/ENCFF825VQR/@@download/ENCFF825VQR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF269FHI bigBed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF307TQZ 292225 ENCODE Processing Pipeline facfaee3fd94e2dfe33564097859e563 https://www.encodeproject.org/files/ENCFF269FHI/@@download/ENCFF269FHI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF082RRJ bigBed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF825VQR 454066 ENCODE Processing Pipeline d93b95c63759f944213a83f2b8b2acdd https://www.encodeproject.org/files/ENCFF082RRJ/@@download/ENCFF082RRJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF307TQZ bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF700OGN, ENCFF750MIM 128509 ENCODE Processing Pipeline 29ba80eee0d97892a5028bf68567ac0b https://www.encodeproject.org/files/ENCFF307TQZ/@@download/ENCFF307TQZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF435ESC bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037JQU, ENCFF700OGN, ENCFF750MIM 4339920 ENCODE Processing Pipeline 2262ccbae76d8f3fcc105a8e59e93911 https://www.encodeproject.org/files/ENCFF435ESC/@@download/ENCFF435ESC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF701ZYD bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF883WDT 66753 ENCODE Processing Pipeline 1132b3bd5fc51702b223d7c0d033b1ce https://www.encodeproject.org/files/ENCFF701ZYD/@@download/ENCFF701ZYD.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF883WDT bed narrowPeak conservative idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF307TQZ, ENCFF435ESC, ENCFF825VQR 16910 ENCODE Processing Pipeline 792386b776d61ff1646a09cc172ca8a1 https://www.encodeproject.org/files/ENCFF883WDT/@@download/ENCFF883WDT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF577UJR bed narrowPeak optimal idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF307TQZ, ENCFF435ESC, ENCFF825VQR 22863 ENCODE Processing Pipeline 5e9c735464c7e63dba6ce09405a9eec0 https://www.encodeproject.org/files/ENCFF577UJR/@@download/ENCFF577UJR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF910ECQ bigBed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF435ESC 10532812 ENCODE Processing Pipeline b8571e8ea7d637e0a54ef3e9d4a97d70 https://www.encodeproject.org/files/ENCFF910ECQ/@@download/ENCFF910ECQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF182PJZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF577UJR 88320 ENCODE Processing Pipeline 4738c1da3804eefad96175e740ec3893 https://www.encodeproject.org/files/ENCFF182PJZ/@@download/ENCFF182PJZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000AYM bam alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZB 1157892919 Bradley Bernstein, Broad 857b986c0c3bc77795a1010b4c9984e1 https://www.encodeproject.org/files/ENCFF000AYM/@@download/ENCFF000AYM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AYN bigBed broadPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001SVH 541362 Bradley Bernstein, Broad e78fb25c36ea16e952abd6ddd5f79607 https://www.encodeproject.org/files/ENCFF000AYN/@@download/ENCFF000AYN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AYO bigWig signal ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AYM 340154857 Bradley Bernstein, Broad 0827849b298e4f28f75f9777a94584eb https://www.encodeproject.org/files/ENCFF000AYO/@@download/ENCFF000AYO.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000AZB fastq reads ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1367762166 Bradley Bernstein, Broad 954be3c5ea49ce8a5926618a60fea5f0 https://www.encodeproject.org/files/ENCFF000AZB/@@download/ENCFF000AZB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF001SVH bed broadPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AYM 302467 Bradley Bernstein, Broad f62ea061234aa2877f1d360749945e58 https://www.encodeproject.org/files/ENCFF001SVH/@@download/ENCFF001SVH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF234GEH bam alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZB, ENCFF807MUK 747268570 ENCODE Processing Pipeline 99556a175a52b7449c03b6f50bee7cc2 https://www.encodeproject.org/files/ENCFF234GEH/@@download/ENCFF234GEH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF423BGG bam unfiltered alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZB, ENCFF807MUK 1734263893 ENCODE Processing Pipeline cef55e2bea203de1fe5d4d8093a101c6 https://www.encodeproject.org/files/ENCFF423BGG/@@download/ENCFF423BGG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF209PKF bam alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZB, ENCFF643CGH 746985008 ENCODE Processing Pipeline c788913e7807e83fc3ba7507254d4e32 https://www.encodeproject.org/files/ENCFF209PKF/@@download/ENCFF209PKF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF801JKJ bam unfiltered alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZB, ENCFF643CGH 1742961651 ENCODE Processing Pipeline 90aa06b12b4c0c96eae4592df70d3b26 https://www.encodeproject.org/files/ENCFF801JKJ/@@download/ENCFF801JKJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF764MRP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF012LET 47526 ENCODE Processing Pipeline 18396e36cd895670839f3be92dcfd496 https://www.encodeproject.org/files/ENCFF764MRP/@@download/ENCFF764MRP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF448BXE bigWig signal p-value ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF209PKF 481344200 ENCODE Processing Pipeline 23dec7340a1c062dfa052da41fdfb5cc https://www.encodeproject.org/files/ENCFF448BXE/@@download/ENCFF448BXE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF574WRF bigBed narrowPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF289BEY 8485477 ENCODE Processing Pipeline cfb7e2cfb22c593cd9afb618174cc1d2 https://www.encodeproject.org/files/ENCFF574WRF/@@download/ENCFF574WRF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF012LET bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF289BEY 3218 ENCODE Processing Pipeline 0c5b65791d9f27ba4c8d0a07a4e64a49 https://www.encodeproject.org/files/ENCFF012LET/@@download/ENCFF012LET.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF979QIN bigWig signal p-value ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF234GEH, ENCFF727XHW 605855953 ENCODE Processing Pipeline 9a90d27c97e252a467142b5790b4eaa7 https://www.encodeproject.org/files/ENCFF979QIN/@@download/ENCFF979QIN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF243FNC bigWig fold change over control ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF209PKF 327302820 ENCODE Processing Pipeline 8db266a50dc15c27f213d859810d0f2a https://www.encodeproject.org/files/ENCFF243FNC/@@download/ENCFF243FNC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF643BBA bigWig fold change over control ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF234GEH, ENCFF727XHW 329338996 ENCODE Processing Pipeline e6ada84240df32b0b4fa3d53afdefbab https://www.encodeproject.org/files/ENCFF643BBA/@@download/ENCFF643BBA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF004OLS bed narrowPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF209PKF 3621654 ENCODE Processing Pipeline df664c2767c90da0d37e08f1e3b099fc https://www.encodeproject.org/files/ENCFF004OLS/@@download/ENCFF004OLS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF574NKV bigBed narrowPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF004OLS 8425798 ENCODE Processing Pipeline 41cbdb90b17f3f9f96dc7b5dcd457d8f https://www.encodeproject.org/files/ENCFF574NKV/@@download/ENCFF574NKV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF289BEY bed narrowPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF234GEH, ENCFF727XHW 3633470 ENCODE Processing Pipeline 4d45d12a691e792772b657ef41fe9a31 https://www.encodeproject.org/files/ENCFF289BEY/@@download/ENCFF289BEY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF129WNO bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF004OLS, ENCFF419RSJ 3259 ENCODE Processing Pipeline 75defa6e1e5ab12441ea8fd223bc457e https://www.encodeproject.org/files/ENCFF129WNO/@@download/ENCFF129WNO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF869RTO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF129WNO 56097 ENCODE Processing Pipeline 98a19be9ca482b13f429ca247ba6bd11 https://www.encodeproject.org/files/ENCFF869RTO/@@download/ENCFF869RTO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000NPO bam alignments ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NPV 1529187722 Richard Myers, HAIB 35d16cf6425f61bc78ae6a43dbe3c0f2 https://www.encodeproject.org/files/ENCFF000NPO/@@download/ENCFF000NPO.bam hg19 released biological replicates with identical biosample ENCFF000NPP bigBed broadPeak peaks ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001TVN 243647 Richard Myers, HAIB ab4f6e39e4dbdd16d0fda70aa504f150 https://www.encodeproject.org/files/ENCFF000NPP/@@download/ENCFF000NPP.bigBed hg19 released biological replicates with identical biosample ENCFF000NPQ bigBed broadPeak peaks ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001TVO 156544 Richard Myers, HAIB 7ed331e27f946206e6dc017cd9886fd1 https://www.encodeproject.org/files/ENCFF000NPQ/@@download/ENCFF000NPQ.bigBed hg19 released biological replicates with identical biosample ENCFF000NPR bam alignments ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NPU 1289540428 Richard Myers, HAIB f16edbd5923d6a51e4076e014a469c6d https://www.encodeproject.org/files/ENCFF000NPR/@@download/ENCFF000NPR.bam hg19 released biological replicates with identical biosample ENCFF000NPS bigWig raw signal ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 160163996 Richard Myers, HAIB 11360855132dd22fe556a5de71c4d798 https://www.encodeproject.org/files/ENCFF000NPS/@@download/ENCFF000NPS.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NPT bigWig raw signal ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 130422147 Richard Myers, HAIB 4a7553c8cf81393faea1254bb62d50b0 https://www.encodeproject.org/files/ENCFF000NPT/@@download/ENCFF000NPT.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000NPU fastq reads ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1318277611 Richard Myers, HAIB 7aa3846aac7a04d672e2296108c210ef https://www.encodeproject.org/files/ENCFF000NPU/@@download/ENCFF000NPU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF000NPV fastq reads ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1568449845 Richard Myers, HAIB b395a2a65524788da2dcc756c997bff1 https://www.encodeproject.org/files/ENCFF000NPV/@@download/ENCFF000NPV.fastq.gz Illumina HiSeq 2000 /files/ENCFF000NPW/ released biological replicates with identical biosample ENCFF001TVN bed broadPeak peaks ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 1 140992 Richard Myers, HAIB 125fcfbbe06fcdd3b5dbad3c9c4a974a https://www.encodeproject.org/files/ENCFF001TVN/@@download/ENCFF001TVN.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF001TVO bed broadPeak peaks ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 1 63695 Richard Myers, HAIB 2a3e94b2ce699686d6010139a0c1dbf3 https://www.encodeproject.org/files/ENCFF001TVO/@@download/ENCFF001TVO.bed.gz hg19 released missing derived_from, biological replicates with identical biosample ENCFF000XRJ bam alignments ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XRV 240324725 Michael Snyder, Stanford 8d09e9d4bad482697836a09bc218e8cc https://www.encodeproject.org/files/ENCFF000XRJ/@@download/ENCFF000XRJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRK bam alignments ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XRU 237406287 Michael Snyder, Stanford 1cd1d45318a5de27f507679d860b9fc8 https://www.encodeproject.org/files/ENCFF000XRK/@@download/ENCFF000XRK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRL bigBed narrowPeak peaks ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VKE 94381 Michael Snyder, Stanford 14579ae3d7bf45ecd78f98c02bca3960 https://www.encodeproject.org/files/ENCFF000XRL/@@download/ENCFF000XRL.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRM bigWig signal ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 318858575 Michael Snyder, Stanford 0a58571a07a78ef169dc289cb0f973fa https://www.encodeproject.org/files/ENCFF000XRM/@@download/ENCFF000XRM.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XRU fastq reads ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 179857331 Michael Snyder, Stanford 6c2acac26bfecdde4e3f70e703762049 https://www.encodeproject.org/files/ENCFF000XRU/@@download/ENCFF000XRU.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQS/ released biological replicates with identical biosample insufficient read length ENCFF000XRV fastq reads ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 183405168 Michael Snyder, Stanford c82c2c34f0dcec74840854bd3dff903b https://www.encodeproject.org/files/ENCFF000XRV/@@download/ENCFF000XRV.fastq.gz Illumina Genome Analyzer /files/ENCFF000XQR/ released biological replicates with identical biosample insufficient read length ENCFF001VKE bed narrowPeak peaks ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 4666 Michael Snyder, Stanford 5371c21b5198224404ceacff38fbbb17 https://www.encodeproject.org/files/ENCFF001VKE/@@download/ENCFF001VKE.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CUB bed narrowPeak optimal idr thresholded peaks ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 16349 ENCODE Consortium Analysis Working Group 7d2821244ae03f55f8d52105ee912ec3 https://www.encodeproject.org/files/ENCFF002CUB/@@download/ENCFF002CUB.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF889SKJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CUB 125421 ENCODE Consortium bdca3a2199d95526a6e373025d2f628e https://www.encodeproject.org/files/ENCFF889SKJ/@@download/ENCFF889SKJ.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000QFT bam alignments ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QGG 214420360 Richard Myers, HAIB e07047a1d59e1463d5b82912d6165396 https://www.encodeproject.org/files/ENCFF000QFT/@@download/ENCFF000QFT.bam hg19 released low read length biological replicates with identical biosample ENCFF000QFU bam alignments ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QGJ 853132699 Richard Myers, HAIB 62e1c343f3038cca2157b09042cfdc79 https://www.encodeproject.org/files/ENCFF000QFU/@@download/ENCFF000QFU.bam hg19 released low read length biological replicates with identical biosample ENCFF000QFV bigBed broadPeak peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001ULB 337186 Richard Myers, HAIB b4650321859b7995da620042e9ad868b https://www.encodeproject.org/files/ENCFF000QFV/@@download/ENCFF000QFV.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000QFW bigBed broadPeak peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULC 368473 Richard Myers, HAIB e177725406127a3a50ca5433946aa18d https://www.encodeproject.org/files/ENCFF000QFW/@@download/ENCFF000QFW.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000QFX bigWig raw signal ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 12589703 Richard Myers, HAIB 9f3c82f081a8758297a19e8671feda1c https://www.encodeproject.org/files/ENCFF000QFX/@@download/ENCFF000QFX.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000QFZ bigWig raw signal ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 12121258 Richard Myers, HAIB b763b2e94fab9123318c98978efa2698 https://www.encodeproject.org/files/ENCFF000QFZ/@@download/ENCFF000QFZ.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000QGG fastq reads ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 919563616 Richard Myers, HAIB 27b3ed7f6b397ca75c6627b5979fc9da https://www.encodeproject.org/files/ENCFF000QGG/@@download/ENCFF000QGG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFS/ released low read length, inconsistent control read length biological replicates with identical biosample, mismatched status ENCFF000QGJ fastq reads ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 923652399 Richard Myers, HAIB 7b8a52426a0d7f6c75d2404b88327942 https://www.encodeproject.org/files/ENCFF000QGJ/@@download/ENCFF000QGJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QFL/ released low read length biological replicates with identical biosample ENCFF001ULB bed broadPeak peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 1 156027 Richard Myers, HAIB 4fcd396a1d5466ba5215c6e26e0025d4 https://www.encodeproject.org/files/ENCFF001ULB/@@download/ENCFF001ULB.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF001ULC bed broadPeak peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 1 175557 Richard Myers, HAIB 9da090750fbd5f57a93b70559a0b6ac5 https://www.encodeproject.org/files/ENCFF001ULC/@@download/ENCFF001ULC.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CMM bed narrowPeak optimal idr thresholded peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 94185 ENCODE Consortium Analysis Working Group 1f0494497f4bf36bc3b8cda4c0c37dde https://www.encodeproject.org/files/ENCFF002CMM/@@download/ENCFF002CMM.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF974QTM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMM 263878 ENCODE Consortium ea0f4ff141568430736565a350994aaf https://www.encodeproject.org/files/ENCFF974QTM/@@download/ENCFF974QTM.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000OQL bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OQU 553508394 Richard Myers, HAIB 1dfcd76daca879dc371a154a913789c2 https://www.encodeproject.org/files/ENCFF000OQL/@@download/ENCFF000OQL.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OQN bigBed broadPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBU 109740 Richard Myers, HAIB 41346e2c22e528e6fb8872bb7a17cb06 https://www.encodeproject.org/files/ENCFF000OQN/@@download/ENCFF000OQN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OQO bigBed broadPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBV 300846 Richard Myers, HAIB e77d860c5192d96836760dcc1e6fe634 https://www.encodeproject.org/files/ENCFF000OQO/@@download/ENCFF000OQO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OQP bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000ORA 847101420 Richard Myers, HAIB 0413b4cc1142a21fe8d8eabd14896190 https://www.encodeproject.org/files/ENCFF000OQP/@@download/ENCFF000OQP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000OQR bigWig raw signal ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 2880518 Richard Myers, HAIB ab9ccf0a469d299d9d370f8cdad5ece9 https://www.encodeproject.org/files/ENCFF000OQR/@@download/ENCFF000OQR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000OQS bigWig raw signal ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 9399712 Richard Myers, HAIB 7ff1784899dec66226d8047592f771f8 https://www.encodeproject.org/files/ENCFF000OQS/@@download/ENCFF000OQS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF000OQU fastq reads ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 473301981 Richard Myers, HAIB 6d6aaee552d932b87a5f61a8ea2c0ba7 https://www.encodeproject.org/files/ENCFF000OQU/@@download/ENCFF000OQU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000ORA fastq reads ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 721190381 Richard Myers, HAIB 8218764bdf238194a41ede535b680524 https://www.encodeproject.org/files/ENCFF000ORA/@@download/ENCFF000ORA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001UBU bed broadPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 1 44095 Richard Myers, HAIB d284a8140197ac9ea2728ccd7d3630fe https://www.encodeproject.org/files/ENCFF001UBU/@@download/ENCFF001UBU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001UBV bed broadPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 1 175762 Richard Myers, HAIB a0d122a46d26b98be194f4ce99e00a0f https://www.encodeproject.org/files/ENCFF001UBV/@@download/ENCFF001UBV.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CJC bed narrowPeak optimal idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 172643 ENCODE Consortium Analysis Working Group 3ba20ad9a7095da9d8291d8161c18e87 https://www.encodeproject.org/files/ENCFF002CJC/@@download/ENCFF002CJC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF242IAB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJC 381921 ENCODE Consortium df604ac9478ee094e317e27b5e0040b6 https://www.encodeproject.org/files/ENCFF242IAB/@@download/ENCFF242IAB.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF796GKK bam unfiltered alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQU, ENCFF643CGH 650781473 ENCODE Processing Pipeline 9943baf53077b16d3b53ba2b42ef6c30 https://www.encodeproject.org/files/ENCFF796GKK/@@download/ENCFF796GKK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF998ZIK bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQU, ENCFF643CGH 390861131 ENCODE Processing Pipeline 610024f03a08e92fb537337d071e7b36 https://www.encodeproject.org/files/ENCFF998ZIK/@@download/ENCFF998ZIK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF299IMS bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORA, ENCFF643CGH 664615914 ENCODE Processing Pipeline 3bd39567ccd8180cf05fe8096983105c https://www.encodeproject.org/files/ENCFF299IMS/@@download/ENCFF299IMS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF887YAK bam unfiltered alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORA, ENCFF643CGH 1027058276 ENCODE Processing Pipeline d5116f34d967cbf54924a36c2db22275 https://www.encodeproject.org/files/ENCFF887YAK/@@download/ENCFF887YAK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF355OYT bam unfiltered alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQU, ENCFF807MUK 648104854 ENCODE Processing Pipeline f138df62ac395b29b7d70055211b933c https://www.encodeproject.org/files/ENCFF355OYT/@@download/ENCFF355OYT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF060WKJ bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQU, ENCFF807MUK 391131941 ENCODE Processing Pipeline 4339cd5dcb42807620d7bc637c4b4c27 https://www.encodeproject.org/files/ENCFF060WKJ/@@download/ENCFF060WKJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF123VAK bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORA, ENCFF807MUK 665029118 ENCODE Processing Pipeline 25309666ae8bdb573cc0d15bf6b58775 https://www.encodeproject.org/files/ENCFF123VAK/@@download/ENCFF123VAK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF375WBL bam unfiltered alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORA, ENCFF807MUK 1022843041 ENCODE Processing Pipeline 1832466f72e092bba9e433efac960e50 https://www.encodeproject.org/files/ENCFF375WBL/@@download/ENCFF375WBL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF052VZV bigWig signal p-value ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF998ZIK 365698476 ENCODE Processing Pipeline d4d8e7c75371ebd963b7ee4549e2fedf https://www.encodeproject.org/files/ENCFF052VZV/@@download/ENCFF052VZV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF148QSK bigWig signal p-value ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299IMS, ENCFF948LKH 481484468 ENCODE Processing Pipeline 2241adf7a7bebec4bfaa6c8758a5a2db https://www.encodeproject.org/files/ENCFF148QSK/@@download/ENCFF148QSK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF020IGM bigWig fold change over control ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF998ZIK 240058977 ENCODE Processing Pipeline 7f35311ef2bf3b75c064990ea40faf6d https://www.encodeproject.org/files/ENCFF020IGM/@@download/ENCFF020IGM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF800HRV bigWig signal p-value ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299IMS, ENCFF948LKH, ENCFF998ZIK 551687620 ENCODE Processing Pipeline 4cdad298d47e3fe1c8652a079c5a567b https://www.encodeproject.org/files/ENCFF800HRV/@@download/ENCFF800HRV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF646VRU bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF948LKH, ENCFF998ZIK 3853110 ENCODE Processing Pipeline d04a82e569d772f2cd945992ed575fab https://www.encodeproject.org/files/ENCFF646VRU/@@download/ENCFF646VRU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF211LTW bigWig fold change over control ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299IMS, ENCFF948LKH 387501552 ENCODE Processing Pipeline 76b421ceebc21c73aee8ba6fe3c29719 https://www.encodeproject.org/files/ENCFF211LTW/@@download/ENCFF211LTW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF404XEI bigBed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF646VRU 8198128 ENCODE Processing Pipeline 470a09374f731d51377b9095e68d01e9 https://www.encodeproject.org/files/ENCFF404XEI/@@download/ENCFF404XEI.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF033KUJ bigBed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF045ANQ 10869823 ENCODE Processing Pipeline 3e3999417014e0debab6b57466fbfd3e https://www.encodeproject.org/files/ENCFF033KUJ/@@download/ENCFF033KUJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF048GGM bed narrowPeak conservative idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF045ANQ, ENCFF419RSJ, ENCFF646VRU, ENCFF683HWN 158968 ENCODE Processing Pipeline 4f87574a4f9d267b481f00192dbbe314 https://www.encodeproject.org/files/ENCFF048GGM/@@download/ENCFF048GGM.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF498ADM bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF048GGM 295941 ENCODE Processing Pipeline 4340df06a054040fd20775cf0b47e72a https://www.encodeproject.org/files/ENCFF498ADM/@@download/ENCFF498ADM.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF491ZOF bigWig fold change over control ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299IMS, ENCFF948LKH, ENCFF998ZIK 546086310 ENCODE Processing Pipeline c877f84b98d00dcf5e67a3a1f2578c8d https://www.encodeproject.org/files/ENCFF491ZOF/@@download/ENCFF491ZOF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF045ANQ bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299IMS, ENCFF948LKH 4700808 ENCODE Processing Pipeline 9e4569f870f5edc64462e111c2c3be5c https://www.encodeproject.org/files/ENCFF045ANQ/@@download/ENCFF045ANQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF683HWN bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF299IMS, ENCFF948LKH, ENCFF998ZIK 5041191 ENCODE Processing Pipeline 682a42473bf7fa8829a788686485ef34 https://www.encodeproject.org/files/ENCFF683HWN/@@download/ENCFF683HWN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF772YWJ bigBed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF683HWN 11254380 ENCODE Processing Pipeline c1ae9082d2daf7ef2790e03a691d3f0b https://www.encodeproject.org/files/ENCFF772YWJ/@@download/ENCFF772YWJ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF834UVX bed narrowPeak optimal idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF045ANQ, ENCFF419RSJ, ENCFF646VRU, ENCFF683HWN 240550 ENCODE Processing Pipeline ae2651345c0138178945300c6923d004 https://www.encodeproject.org/files/ENCFF834UVX/@@download/ENCFF834UVX.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF616RCD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF834UVX 490347 ENCODE Processing Pipeline 84f533fba5b0b6614e83c1fb52e80f33 https://www.encodeproject.org/files/ENCFF616RCD/@@download/ENCFF616RCD.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF197POC bigWig fold change over control ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060WKJ, ENCFF356DXM 235019599 ENCODE Processing Pipeline 3dd8a5623e3cb33952be9be6e2ebd664 https://www.encodeproject.org/files/ENCFF197POC/@@download/ENCFF197POC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF471MGU bigWig signal p-value ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF123VAK, ENCFF356DXM 461365945 ENCODE Processing Pipeline 92291f00469be9685f731962bb65d3a6 https://www.encodeproject.org/files/ENCFF471MGU/@@download/ENCFF471MGU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF887SOZ bigWig fold change over control ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060WKJ, ENCFF123VAK, ENCFF356DXM 538238528 ENCODE Processing Pipeline 77260c53265aac14515c47dbf2e1a1c1 https://www.encodeproject.org/files/ENCFF887SOZ/@@download/ENCFF887SOZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF532VDQ bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF123VAK, ENCFF356DXM 4740720 ENCODE Processing Pipeline 02e839bde6921f2f70918ae05f02055d https://www.encodeproject.org/files/ENCFF532VDQ/@@download/ENCFF532VDQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF247EFL bigBed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF684GVN 11315157 ENCODE Processing Pipeline acd06518531e74d5a7b31db474f5eb34 https://www.encodeproject.org/files/ENCFF247EFL/@@download/ENCFF247EFL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF843SYD bed narrowPeak optimal idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF380YEP, ENCFF532VDQ, ENCFF684GVN 241631 ENCODE Processing Pipeline c06ac8027f55d91b669cebbc14184c53 https://www.encodeproject.org/files/ENCFF843SYD/@@download/ENCFF843SYD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF856ZSS bigBed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF380YEP 8123838 ENCODE Processing Pipeline 47033f54078f9ecf8723a0c3944f0687 https://www.encodeproject.org/files/ENCFF856ZSS/@@download/ENCFF856ZSS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF380YEP bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060WKJ, ENCFF356DXM 3832278 ENCODE Processing Pipeline 3c2e59e388ffc27591fefb08cbf09b45 https://www.encodeproject.org/files/ENCFF380YEP/@@download/ENCFF380YEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF087TMV bed narrowPeak conservative idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF380YEP, ENCFF532VDQ, ENCFF684GVN 165812 ENCODE Processing Pipeline 14182231fbf58be14c7c2dcf99506cc5 https://www.encodeproject.org/files/ENCFF087TMV/@@download/ENCFF087TMV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF379HTE bigWig signal p-value ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060WKJ, ENCFF356DXM 382257741 ENCODE Processing Pipeline 6752ec2df62ef9154cebe8838b430435 https://www.encodeproject.org/files/ENCFF379HTE/@@download/ENCFF379HTE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF218TTK bigWig signal p-value ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060WKJ, ENCFF123VAK, ENCFF356DXM 551893434 ENCODE Processing Pipeline c5a191944f349829022aed1d6c2ccddb https://www.encodeproject.org/files/ENCFF218TTK/@@download/ENCFF218TTK.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF992QGS bigWig fold change over control ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF123VAK, ENCFF356DXM 382546676 ENCODE Processing Pipeline d7f7c1db6240684a68c0de544e3c1019 https://www.encodeproject.org/files/ENCFF992QGS/@@download/ENCFF992QGS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF684GVN bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF060WKJ, ENCFF123VAK, ENCFF356DXM 5098343 ENCODE Processing Pipeline 1acf2c372a047e102ac3485dcecad566 https://www.encodeproject.org/files/ENCFF684GVN/@@download/ENCFF684GVN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF106GRZ bigBed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF532VDQ 10916457 ENCODE Processing Pipeline 5841798e5796a51743793415a0a04909 https://www.encodeproject.org/files/ENCFF106GRZ/@@download/ENCFF106GRZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF872MGS bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF843SYD 488444 ENCODE Processing Pipeline 828a2b46e628d3cc4935247eb9a71d88 https://www.encodeproject.org/files/ENCFF872MGS/@@download/ENCFF872MGS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF015SPK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF087TMV 304239 ENCODE Processing Pipeline a455a2f187d8a9d4a96fa4960e30479f https://www.encodeproject.org/files/ENCFF015SPK/@@download/ENCFF015SPK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000ORC bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000ORR 1916537389 Richard Myers, HAIB fd5965695414d0d3237c5c2e3244ffd0 https://www.encodeproject.org/files/ENCFF000ORC/@@download/ENCFF000ORC.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000ORD bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000ORP 2152328616 Richard Myers, HAIB 63845f198f2942087d684d5894795168 https://www.encodeproject.org/files/ENCFF000ORD/@@download/ENCFF000ORD.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000ORE bigBed broadPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBY 854795 Richard Myers, HAIB bd084e5f3368675e730ca0804808651f https://www.encodeproject.org/files/ENCFF000ORE/@@download/ENCFF000ORE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000ORF bigBed broadPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBZ 1226216 Richard Myers, HAIB f4196985e1e4a815ecec12b396be4f54 https://www.encodeproject.org/files/ENCFF000ORF/@@download/ENCFF000ORF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000ORH bigWig raw signal ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 63823735 Richard Myers, HAIB dcd36c05dd222e3fed9e0803ef1c2111 https://www.encodeproject.org/files/ENCFF000ORH/@@download/ENCFF000ORH.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000ORI bigWig raw signal ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 47340327 Richard Myers, HAIB 047fd95891cc9353cdee506969fb5aa1 https://www.encodeproject.org/files/ENCFF000ORI/@@download/ENCFF000ORI.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF000ORP fastq reads ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1749306889 Richard Myers, HAIB 59ec1c39e3eeaa5b20e822adc651b152 https://www.encodeproject.org/files/ENCFF000ORP/@@download/ENCFF000ORP.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000ORR fastq reads ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1479796204 Richard Myers, HAIB 6ed051a48a9b9e75fa07f5f9339663a8 https://www.encodeproject.org/files/ENCFF000ORR/@@download/ENCFF000ORR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF001UBY bed broadPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 1 533909 Richard Myers, HAIB 207a27b3ac8c2efd9657c84c9b0f05a8 https://www.encodeproject.org/files/ENCFF001UBY/@@download/ENCFF001UBY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF001UBZ bed broadPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 1 660137 Richard Myers, HAIB a36dedbf942458f5b481cb7a38619b9a https://www.encodeproject.org/files/ENCFF001UBZ/@@download/ENCFF001UBZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF002CJE bed narrowPeak optimal idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 506280 ENCODE Consortium Analysis Working Group 4e11e8ea1d8d30a05af469d92507d4e8 https://www.encodeproject.org/files/ENCFF002CJE/@@download/ENCFF002CJE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample missing control alignments ENCFF636HGU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJE 1349233 ENCODE Consortium d2bc0516a43b09f436fd7109096c69c4 https://www.encodeproject.org/files/ENCFF636HGU/@@download/ENCFF636HGU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF924LLX bam unfiltered alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORP, ENCFF643CGH 2106502269 ENCODE Processing Pipeline 81dd71ab9021a39a4cc1fb1502899147 https://www.encodeproject.org/files/ENCFF924LLX/@@download/ENCFF924LLX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF574FQP bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORP, ENCFF643CGH 979496724 ENCODE Processing Pipeline 5a390e910fde404fecba8cb7ffb19b20 https://www.encodeproject.org/files/ENCFF574FQP/@@download/ENCFF574FQP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF387HHV bam unfiltered alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORR, ENCFF643CGH 1924091683 ENCODE Processing Pipeline 259b5b43f40fc57f60833fde379ed8e9 https://www.encodeproject.org/files/ENCFF387HHV/@@download/ENCFF387HHV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF524CBX bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORR, ENCFF643CGH 1128355702 ENCODE Processing Pipeline 52077107005bebec5e4040ac3711cb0c https://www.encodeproject.org/files/ENCFF524CBX/@@download/ENCFF524CBX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF904NZW bam unfiltered alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORR, ENCFF807MUK 1919101741 ENCODE Processing Pipeline 3c233360fa483d80264f24c42b72c611 https://www.encodeproject.org/files/ENCFF904NZW/@@download/ENCFF904NZW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF972DXD bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORR, ENCFF807MUK 1129085747 ENCODE Processing Pipeline 6260d72268b4673b315fe651c0e62391 https://www.encodeproject.org/files/ENCFF972DXD/@@download/ENCFF972DXD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF753GCI bam unfiltered alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORP, ENCFF807MUK 2103158423 ENCODE Processing Pipeline bb4ad5d2f3eb99c72957d1633f11a729 https://www.encodeproject.org/files/ENCFF753GCI/@@download/ENCFF753GCI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF526YGE bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORP, ENCFF807MUK 980378700 ENCODE Processing Pipeline feec554a346d2d531e21937e929e0eb6 https://www.encodeproject.org/files/ENCFF526YGE/@@download/ENCFF526YGE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF530TMN bigWig signal p-value ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF574FQP 529822798 ENCODE Processing Pipeline 144ef0ee2b3cfd259bcb588fa58250e4 https://www.encodeproject.org/files/ENCFF530TMN/@@download/ENCFF530TMN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF003WJF bigWig signal p-value ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF524CBX 526176878 ENCODE Processing Pipeline 9a3613a39f0bd16476872cc6cebe63b2 https://www.encodeproject.org/files/ENCFF003WJF/@@download/ENCFF003WJF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF752OKK bigWig signal p-value ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF524CBX, ENCFF574FQP 532648188 ENCODE Processing Pipeline e9d6889adaf2403deab9812fc4141fe1 https://www.encodeproject.org/files/ENCFF752OKK/@@download/ENCFF752OKK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF376XTC bigWig fold change over control ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF574FQP 399351264 ENCODE Processing Pipeline 439fc3246bd816a3945764aa23b2db11 https://www.encodeproject.org/files/ENCFF376XTC/@@download/ENCFF376XTC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF795YDZ bigWig fold change over control ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF524CBX 442194315 ENCODE Processing Pipeline ccc0ff90a4ad1a64f763ff85a1887676 https://www.encodeproject.org/files/ENCFF795YDZ/@@download/ENCFF795YDZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF460HGL bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF574FQP 6730894 ENCODE Processing Pipeline 04c3f4725fc381eab31bc688dd78b1a5 https://www.encodeproject.org/files/ENCFF460HGL/@@download/ENCFF460HGL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF379IRQ bigWig fold change over control ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF524CBX, ENCFF574FQP 694356003 ENCODE Processing Pipeline 9632c70010ce39a0fe5470959c8214f8 https://www.encodeproject.org/files/ENCFF379IRQ/@@download/ENCFF379IRQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF872ETJ bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF524CBX, ENCFF574FQP 7095456 ENCODE Processing Pipeline 6dfaab1b2661591cff9a5d24424914d3 https://www.encodeproject.org/files/ENCFF872ETJ/@@download/ENCFF872ETJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF075AAT bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF524CBX 6845961 ENCODE Processing Pipeline baffbf4f257a824d25318b3cdafa544c https://www.encodeproject.org/files/ENCFF075AAT/@@download/ENCFF075AAT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF874UWE bigBed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF460HGL 11766023 ENCODE Processing Pipeline 8ea17b67d1b8c370704cc46b405a5c32 https://www.encodeproject.org/files/ENCFF874UWE/@@download/ENCFF874UWE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF374UIH bed narrowPeak conservative idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF075AAT, ENCFF419RSJ, ENCFF460HGL, ENCFF872ETJ 594120 ENCODE Processing Pipeline 16f7796f11aa24cfd324864779622430 https://www.encodeproject.org/files/ENCFF374UIH/@@download/ENCFF374UIH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF500HYP bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF374UIH 1273946 ENCODE Processing Pipeline 7268eac82257f5bc1a1fc31697022953 https://www.encodeproject.org/files/ENCFF500HYP/@@download/ENCFF500HYP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF422HDN bed narrowPeak optimal idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF075AAT, ENCFF419RSJ, ENCFF460HGL, ENCFF872ETJ 668440 ENCODE Processing Pipeline 81e25b8c10a5241e0d03b2c2ffe0fde1 https://www.encodeproject.org/files/ENCFF422HDN/@@download/ENCFF422HDN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF516UYE bigBed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF872ETJ 12113472 ENCODE Processing Pipeline f576ed6a467f627f14cf9dea20941d70 https://www.encodeproject.org/files/ENCFF516UYE/@@download/ENCFF516UYE.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF737COK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF422HDN 1407891 ENCODE Processing Pipeline 9128e8c499439fd3850004694da139fd https://www.encodeproject.org/files/ENCFF737COK/@@download/ENCFF737COK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF373SUB bigBed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF075AAT 12680220 ENCODE Processing Pipeline 63d8903483a0c02b1cfab0694911f0b3 https://www.encodeproject.org/files/ENCFF373SUB/@@download/ENCFF373SUB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF646TLL bigWig fold change over control ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF526YGE 402199641 ENCODE Processing Pipeline cb57e7efabc4b553046abfd656c61360 https://www.encodeproject.org/files/ENCFF646TLL/@@download/ENCFF646TLL.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF516GGA bigWig signal p-value ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF526YGE 421634601 ENCODE Processing Pipeline fe7cc6d7990a640a3e8effca5ec122ba https://www.encodeproject.org/files/ENCFF516GGA/@@download/ENCFF516GGA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF154FVY bigWig signal p-value ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF972DXD 523486650 ENCODE Processing Pipeline c727bafd23a16b76f6c7e3c4c5496fee https://www.encodeproject.org/files/ENCFF154FVY/@@download/ENCFF154FVY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF698TER bigWig signal p-value ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF526YGE, ENCFF972DXD 535838502 ENCODE Processing Pipeline 970e902ef490788889592beb6522123b https://www.encodeproject.org/files/ENCFF698TER/@@download/ENCFF698TER.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF535BSE bigWig fold change over control ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF972DXD 433403783 ENCODE Processing Pipeline bb76080be2de42d326e7715453735021 https://www.encodeproject.org/files/ENCFF535BSE/@@download/ENCFF535BSE.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF918SPH bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF526YGE 6732996 ENCODE Processing Pipeline ca83b13a50c803ada9e8f9ba728c4ff2 https://www.encodeproject.org/files/ENCFF918SPH/@@download/ENCFF918SPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF281JKH bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF972DXD 6848388 ENCODE Processing Pipeline e8bf9842b756def80236cb07a1e8a6a7 https://www.encodeproject.org/files/ENCFF281JKH/@@download/ENCFF281JKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF339CZB bigWig fold change over control ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF526YGE, ENCFF972DXD 692238404 ENCODE Processing Pipeline 15c6e88624b3bf81d5255671440e2915 https://www.encodeproject.org/files/ENCFF339CZB/@@download/ENCFF339CZB.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF671TGV bigBed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF281JKH 12683898 ENCODE Processing Pipeline 8593343f99255e1690c94ff801743811 https://www.encodeproject.org/files/ENCFF671TGV/@@download/ENCFF671TGV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF772GFC bigBed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF389PNH 12042290 ENCODE Processing Pipeline 48fcea0d49968b866fda99e32a8dcef3 https://www.encodeproject.org/files/ENCFF772GFC/@@download/ENCFF772GFC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF468LYO bed narrowPeak optimal idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF281JKH, ENCFF389PNH, ENCFF918SPH 654530 ENCODE Processing Pipeline ba4bfac04ac18497eed776496e712a6c https://www.encodeproject.org/files/ENCFF468LYO/@@download/ENCFF468LYO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF389PNH bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF526YGE, ENCFF972DXD 7046331 ENCODE Processing Pipeline ddb83733b82d60cef0b21c0d1db1f632 https://www.encodeproject.org/files/ENCFF389PNH/@@download/ENCFF389PNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF447DMV bigBed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF918SPH 11762549 ENCODE Processing Pipeline 54c8ae93d99b4bd9f76a04966e6d404b https://www.encodeproject.org/files/ENCFF447DMV/@@download/ENCFF447DMV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF702SIG bed narrowPeak conservative idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF281JKH, ENCFF389PNH, ENCFF918SPH 589174 ENCODE Processing Pipeline a6fe2582770ab7df9d00b20ca70589e6 https://www.encodeproject.org/files/ENCFF702SIG/@@download/ENCFF702SIG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF281ZRI bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF702SIG 1265202 ENCODE Processing Pipeline f7aed1fa04f06a33b57b57a649c9d66e https://www.encodeproject.org/files/ENCFF281ZRI/@@download/ENCFF281ZRI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF204TAK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF468LYO 1383574 ENCODE Processing Pipeline 29e4910211689fbe87c23c626e1a6df9 https://www.encodeproject.org/files/ENCFF204TAK/@@download/ENCFF204TAK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF000NWW bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NXE 501637082 Richard Myers, HAIB 44c45079e73465a3d5ab9540d5b56028 https://www.encodeproject.org/files/ENCFF000NWW/@@download/ENCFF000NWW.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NWX bigBed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TXK 72732 Richard Myers, HAIB 0d0ed8abda769af8b6e0261fbd19dec1 https://www.encodeproject.org/files/ENCFF000NWX/@@download/ENCFF000NWX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NWY bigBed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TXL 314508 Richard Myers, HAIB 326eff59fe8a771539063e5941330222 https://www.encodeproject.org/files/ENCFF000NWY/@@download/ENCFF000NWY.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NWZ bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NXJ 858294027 Richard Myers, HAIB b973ab4432f19057d95d5ae65e19d40f https://www.encodeproject.org/files/ENCFF000NWZ/@@download/ENCFF000NWZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NXB bigWig raw signal ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 3798343 Richard Myers, HAIB c2d596c454d9307376cad1d5da509dc2 https://www.encodeproject.org/files/ENCFF000NXB/@@download/ENCFF000NXB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NXD bigWig raw signal ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 10133425 Richard Myers, HAIB 404ee81878b81dbe2b298a48f4f5e6e7 https://www.encodeproject.org/files/ENCFF000NXD/@@download/ENCFF000NXD.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NXE fastq reads ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 445880471 Richard Myers, HAIB c87a6e0d6c5e5c59946f985b0b398494 https://www.encodeproject.org/files/ENCFF000NXE/@@download/ENCFF000NXE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000NXJ fastq reads ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 767402556 Richard Myers, HAIB 1df63db4f86c4f057041ff7a58f27240 https://www.encodeproject.org/files/ENCFF000NXJ/@@download/ENCFF000NXJ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000ODP/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001TXK bed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 1 15957 Richard Myers, HAIB 5fce143cd102115d65f5407c86b33fc1 https://www.encodeproject.org/files/ENCFF001TXK/@@download/ENCFF001TXK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF001TXL bed broadPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 1 138674 Richard Myers, HAIB cd955d73c911652b3355a89dc0b2edf6 https://www.encodeproject.org/files/ENCFF001TXL/@@download/ENCFF001TXL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF002CHD bed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 180187 ENCODE Consortium Analysis Working Group cc95db1f7a06b5a71c2aa393c3256bac https://www.encodeproject.org/files/ENCFF002CHD/@@download/ENCFF002CHD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF635XDD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CHD 392697 ENCODE Consortium bae1eae00994a7ed14524a11c470f5f6 https://www.encodeproject.org/files/ENCFF635XDD/@@download/ENCFF635XDD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF013EWV bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF643CGH 584631537 ENCODE Processing Pipeline ab5fd6be24168792c550a1b5ee9f2f5e https://www.encodeproject.org/files/ENCFF013EWV/@@download/ENCFF013EWV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF191UHV bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF643CGH 266709769 ENCODE Processing Pipeline 46e097d33be62d58a10791ac36aab2f1 https://www.encodeproject.org/files/ENCFF191UHV/@@download/ENCFF191UHV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF665BAJ bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF643CGH 562405034 ENCODE Processing Pipeline 786a29b8b53155de71b35fd531814693 https://www.encodeproject.org/files/ENCFF665BAJ/@@download/ENCFF665BAJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF575FBF bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF643CGH 1003429943 ENCODE Processing Pipeline fdb037703dc81094239158d8213b52ee https://www.encodeproject.org/files/ENCFF575FBF/@@download/ENCFF575FBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF161DMX bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF807MUK 583934443 ENCODE Processing Pipeline 78f5a2746bc2b93dc7ee9d76387db614 https://www.encodeproject.org/files/ENCFF161DMX/@@download/ENCFF161DMX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF195HFC bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF807MUK 263852803 ENCODE Processing Pipeline c12a93f450e4d5bc04edca4ee50c8d70 https://www.encodeproject.org/files/ENCFF195HFC/@@download/ENCFF195HFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF810SZD bam unfiltered alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF807MUK 1006168129 ENCODE Processing Pipeline 9b8fb9f65b40ed50480fe619187d2f27 https://www.encodeproject.org/files/ENCFF810SZD/@@download/ENCFF810SZD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF840QLL bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF807MUK 556612043 ENCODE Processing Pipeline 06bc35d694950b40a0026bbcf830ecf7 https://www.encodeproject.org/files/ENCFF840QLL/@@download/ENCFF840QLL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF415HRV bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF191UHV, ENCFF488YYE 384751670 ENCODE Processing Pipeline cb3d7184b05213348baceef236cc5cae https://www.encodeproject.org/files/ENCFF415HRV/@@download/ENCFF415HRV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF832IPZ bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488YYE, ENCFF665BAJ 307679673 ENCODE Processing Pipeline 4e9429437fdc1b90ad9ec8a9f5eb8e66 https://www.encodeproject.org/files/ENCFF832IPZ/@@download/ENCFF832IPZ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF291WBN bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488YYE, ENCFF665BAJ 384039897 ENCODE Processing Pipeline 22023d19109a7507d2f43421024dc958 https://www.encodeproject.org/files/ENCFF291WBN/@@download/ENCFF291WBN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF557ZWN bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF191UHV, ENCFF488YYE, ENCFF665BAJ 4767893 ENCODE Processing Pipeline d1fdba47e4a42621ce078275da07bbf3 https://www.encodeproject.org/files/ENCFF557ZWN/@@download/ENCFF557ZWN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF492EEW bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF191UHV, ENCFF488YYE 174977660 ENCODE Processing Pipeline 3ff939d304f06c9685b2291c39985fbf https://www.encodeproject.org/files/ENCFF492EEW/@@download/ENCFF492EEW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF878VND bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF557ZWN 10938776 ENCODE Processing Pipeline 0fef616faff9af87b6d6e3c8738ddbe3 https://www.encodeproject.org/files/ENCFF878VND/@@download/ENCFF878VND.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF295QTX bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF191UHV, ENCFF488YYE, ENCFF665BAJ 467713078 ENCODE Processing Pipeline 05e1b3ec40e8e3c624c710cc89eb5910 https://www.encodeproject.org/files/ENCFF295QTX/@@download/ENCFF295QTX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF872HOJ bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF191UHV, ENCFF488YYE, ENCFF665BAJ 421741951 ENCODE Processing Pipeline ea8a8fbd9a927f99dca290b9929dd898 https://www.encodeproject.org/files/ENCFF872HOJ/@@download/ENCFF872HOJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF186CJG bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF191UHV, ENCFF488YYE 2726254 ENCODE Processing Pipeline 4886edeb62a7f3149c0785c7c2eb1d56 https://www.encodeproject.org/files/ENCFF186CJG/@@download/ENCFF186CJG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF720VWD bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488YYE, ENCFF665BAJ 4548047 ENCODE Processing Pipeline 0442b51e3fa82ecf791d0cf88ded3d27 https://www.encodeproject.org/files/ENCFF720VWD/@@download/ENCFF720VWD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF080JZQ bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF720VWD 10589093 ENCODE Processing Pipeline 521007bb045027b26fc4b6d555dcee35 https://www.encodeproject.org/files/ENCFF080JZQ/@@download/ENCFF080JZQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF468GCV bed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF186CJG, ENCFF419RSJ, ENCFF557ZWN, ENCFF720VWD 74931 ENCODE Processing Pipeline cd77510e1caf417b2fc4da26fdfd844b https://www.encodeproject.org/files/ENCFF468GCV/@@download/ENCFF468GCV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF845OMO bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF186CJG 5956764 ENCODE Processing Pipeline 97fef6c99e03e21989c34d9b02585b33 https://www.encodeproject.org/files/ENCFF845OMO/@@download/ENCFF845OMO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF423TWT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF468GCV 180461 ENCODE Processing Pipeline f4bc5f491c161542601d591f4cb9f46d https://www.encodeproject.org/files/ENCFF423TWT/@@download/ENCFF423TWT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF830BRO bed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF186CJG, ENCFF419RSJ, ENCFF557ZWN, ENCFF720VWD 208861 ENCODE Processing Pipeline 5cc3b67aced5510b82769d0c2f9f5cd8 https://www.encodeproject.org/files/ENCFF830BRO/@@download/ENCFF830BRO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF191FWB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF830BRO 429143 ENCODE Processing Pipeline b028e6bfbe63f43778cd397191ed8711 https://www.encodeproject.org/files/ENCFF191FWB/@@download/ENCFF191FWB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF828VAA bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 364522154 ENCODE Processing Pipeline 880af93a4d00aa7350bf0dd52844859f https://www.encodeproject.org/files/ENCFF828VAA/@@download/ENCFF828VAA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF563GOS bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 175003805 ENCODE Processing Pipeline 9a2dceed6b2657a1ae1b62a9a76e1a6c https://www.encodeproject.org/files/ENCFF563GOS/@@download/ENCFF563GOS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF484OTT bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 336343845 ENCODE Processing Pipeline a724e800ca0eefb542a89084d117c215 https://www.encodeproject.org/files/ENCFF484OTT/@@download/ENCFF484OTT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF555ETY bigWig signal p-value ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HFC, ENCFF840QLL, ENCFF963CVB 468179785 ENCODE Processing Pipeline 64510466831c81d4324249c531fa7be8 https://www.encodeproject.org/files/ENCFF555ETY/@@download/ENCFF555ETY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF845FPS bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HFC, ENCFF840QLL, ENCFF963CVB 427195396 ENCODE Processing Pipeline bfea43fe214bb8ad165b9fdaaafb587e https://www.encodeproject.org/files/ENCFF845FPS/@@download/ENCFF845FPS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF106GZB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF138CXP 168422 ENCODE Processing Pipeline ca5d3684c1a3cc7ac6943ca2dec48370 https://www.encodeproject.org/files/ENCFF106GZB/@@download/ENCFF106GZB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF906YBW bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF261ZWR 422206 ENCODE Processing Pipeline 3f03b652a3ffed113288b8ffed168ba8 https://www.encodeproject.org/files/ENCFF906YBW/@@download/ENCFF906YBW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF492SNJ bigWig fold change over control ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 307059393 ENCODE Processing Pipeline 2b7cd636fb283ae0f93a754ae16c3b90 https://www.encodeproject.org/files/ENCFF492SNJ/@@download/ENCFF492SNJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF815LEF bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 2732112 ENCODE Processing Pipeline 4fd3d4b814f88379c810cb3453838ba8 https://www.encodeproject.org/files/ENCFF815LEF/@@download/ENCFF815LEF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF099MXC bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 4556867 ENCODE Processing Pipeline 4815bbf64cefc1a6c8ecac7b0fb849db https://www.encodeproject.org/files/ENCFF099MXC/@@download/ENCFF099MXC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF280AHM bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF099MXC 10607374 ENCODE Processing Pipeline 55d815e30729a9a6d811cba211af4db6 https://www.encodeproject.org/files/ENCFF280AHM/@@download/ENCFF280AHM.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF662TQY bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF515LFS 10718414 ENCODE Processing Pipeline 370465385fcce39c8f4846c28617913a https://www.encodeproject.org/files/ENCFF662TQY/@@download/ENCFF662TQY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF515LFS bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF195HFC, ENCFF840QLL, ENCFF963CVB 4605454 ENCODE Processing Pipeline df080a7bd275815f61a75344112b6019 https://www.encodeproject.org/files/ENCFF515LFS/@@download/ENCFF515LFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF387EMO bigBed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF815LEF 5976547 ENCODE Processing Pipeline b3ac8ce3a0e76425920d67c03fd84f11 https://www.encodeproject.org/files/ENCFF387EMO/@@download/ENCFF387EMO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF138CXP bed narrowPeak conservative idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099MXC, ENCFF515LFS, ENCFF815LEF 66073 ENCODE Processing Pipeline 4fdd5e2ca1e6f3aa2adab2b3cddf7520 https://www.encodeproject.org/files/ENCFF138CXP/@@download/ENCFF138CXP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF261ZWR bed narrowPeak optimal idr thresholded peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF099MXC, ENCFF515LFS, ENCFF815LEF 204157 ENCODE Processing Pipeline 8b99923b94fbef4a4366487ff0ed48f3 https://www.encodeproject.org/files/ENCFF261ZWR/@@download/ENCFF261ZWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF000QWP bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000QWZ 123133562 Richard Myers, HAIB f00ef0f6be359db08de7289cc54b8851 https://www.encodeproject.org/files/ENCFF000QWP/@@download/ENCFF000QWP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000QWR bigBed broadPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001UOX 1050001 Richard Myers, HAIB 54f09d2df7fb837e66ac1c42906ea5ec https://www.encodeproject.org/files/ENCFF000QWR/@@download/ENCFF000QWR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000QWS bigBed broadPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001UOY 738888 Richard Myers, HAIB bb8044527b3951a83723ab1815ddf706 https://www.encodeproject.org/files/ENCFF000QWS/@@download/ENCFF000QWS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000QWT bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000QXE 1822272823 Richard Myers, HAIB 0cf6bc6eda139e0fcfb26ed7118d7d6d https://www.encodeproject.org/files/ENCFF000QWT/@@download/ENCFF000QWT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000QWU bigWig raw signal ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 31437618 Richard Myers, HAIB 8a07f4dcfee16c100a6202f9622e46a1 https://www.encodeproject.org/files/ENCFF000QWU/@@download/ENCFF000QWU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000QWV bigWig raw signal ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 50696570 Richard Myers, HAIB 19bf914dab9a17b3f7c6dd849a947b28 https://www.encodeproject.org/files/ENCFF000QWV/@@download/ENCFF000QWV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from ENCFF000QWZ fastq reads ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 454914918 Richard Myers, HAIB 4c6d34a4c402efa7941eed2062ee8830 https://www.encodeproject.org/files/ENCFF000QWZ/@@download/ENCFF000QWZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QXL/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000QXE fastq reads ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 1825001939 Richard Myers, HAIB 15a06555e9f5778fa94e56a543118a42 https://www.encodeproject.org/files/ENCFF000QXE/@@download/ENCFF000QXE.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QXL/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF001UOX bed broadPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 1 528556 Richard Myers, HAIB e52ada3082ff078048789a2b4d98685d https://www.encodeproject.org/files/ENCFF001UOX/@@download/ENCFF001UOX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF001UOY bed broadPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 1 481766 Richard Myers, HAIB ebc49e7aecd06a33b6fbe8ebd5a760ed https://www.encodeproject.org/files/ENCFF001UOY/@@download/ENCFF001UOY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF002CNI bed narrowPeak optimal idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 572707 ENCODE Consortium Analysis Working Group 932f3a2778e0ddb4b1d5f1912a5416ce https://www.encodeproject.org/files/ENCFF002CNI/@@download/ENCFF002CNI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing derived_from, biological replicates with identical biosample ENCFF312KDK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CNI 1306819 ENCODE Consortium 3fd6e3cf16bf780e3d6c4576ecc19699 https://www.encodeproject.org/files/ENCFF312KDK/@@download/ENCFF312KDK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF113PPG bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWZ, ENCFF643CGH 433648575 ENCODE Processing Pipeline 25c01ef6c4935a9e7f833e8d38bf22a7 https://www.encodeproject.org/files/ENCFF113PPG/@@download/ENCFF113PPG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF509LZW bam unfiltered alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWZ, ENCFF643CGH 625251276 ENCODE Processing Pipeline 1634868d54dd0767236cf3baf65faff9 https://www.encodeproject.org/files/ENCFF509LZW/@@download/ENCFF509LZW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF245BAO bam unfiltered alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QXE, ENCFF643CGH 1985889595 ENCODE Processing Pipeline e27c67d8d6f8c004a3856b240adde7b9 https://www.encodeproject.org/files/ENCFF245BAO/@@download/ENCFF245BAO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF680VQE bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QXE, ENCFF643CGH 1234880565 ENCODE Processing Pipeline 5645dd4a92df0441c17fb1d48d2fed23 https://www.encodeproject.org/files/ENCFF680VQE/@@download/ENCFF680VQE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF777OEQ bam unfiltered alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWZ, ENCFF807MUK 624643959 ENCODE Processing Pipeline 91b2466f5a5e1053c067bd39f9763cbd https://www.encodeproject.org/files/ENCFF777OEQ/@@download/ENCFF777OEQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF691TYS bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWZ, ENCFF807MUK 433898773 ENCODE Processing Pipeline 28774575045d2710dce303c952c890a9 https://www.encodeproject.org/files/ENCFF691TYS/@@download/ENCFF691TYS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF388ZHJ bam unfiltered alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QXE, ENCFF807MUK 1979901929 ENCODE Processing Pipeline 1aff25af84f0db95c3c644665c2a05ff https://www.encodeproject.org/files/ENCFF388ZHJ/@@download/ENCFF388ZHJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF041ZFB bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QXE, ENCFF807MUK 1235426041 ENCODE Processing Pipeline fcc5cb2a894ca216486f06899cde1e0c https://www.encodeproject.org/files/ENCFF041ZFB/@@download/ENCFF041ZFB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF639DZB bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF478FRJ, ENCFF680VQE 6193115 ENCODE Processing Pipeline 5269f9758395ba1c33923c6aeb8b702d https://www.encodeproject.org/files/ENCFF639DZB/@@download/ENCFF639DZB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF992GIC bed narrowPeak conservative idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF065CIY, ENCFF110ALL, ENCFF419RSJ, ENCFF639DZB 262829 ENCODE Processing Pipeline 38a9e50f0b3e7444329077cd5cd881bf https://www.encodeproject.org/files/ENCFF992GIC/@@download/ENCFF992GIC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF929WYQ bed narrowPeak optimal idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF065CIY, ENCFF110ALL, ENCFF419RSJ, ENCFF639DZB 547540 ENCODE Processing Pipeline b63bef17f3c06348899abdc56779946a https://www.encodeproject.org/files/ENCFF929WYQ/@@download/ENCFF929WYQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF382RCU bigWig signal p-value ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF113PPG, ENCFF478FRJ 472781186 ENCODE Processing Pipeline 618fee4f41fea4f9e5f0eb37d2cbac41 https://www.encodeproject.org/files/ENCFF382RCU/@@download/ENCFF382RCU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF203WMV bigWig signal p-value ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF478FRJ, ENCFF680VQE 724716365 ENCODE Processing Pipeline 7ed7676a3f993b03f973bd37cf2c625c https://www.encodeproject.org/files/ENCFF203WMV/@@download/ENCFF203WMV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF979GFY bigWig fold change over control ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF113PPG, ENCFF478FRJ 285509054 ENCODE Processing Pipeline b4cc49b3fbb5ee9ebb423b87dac90576 https://www.encodeproject.org/files/ENCFF979GFY/@@download/ENCFF979GFY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF947RSV bigWig fold change over control ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF478FRJ, ENCFF680VQE 575449263 ENCODE Processing Pipeline dfdf0e1bdcf36fd4bbfd1dcd96af80ee https://www.encodeproject.org/files/ENCFF947RSV/@@download/ENCFF947RSV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF435PZF bigWig fold change over control ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF113PPG, ENCFF478FRJ, ENCFF680VQE 753005268 ENCODE Processing Pipeline 58ef357c1e268d6d0140621c59d58666 https://www.encodeproject.org/files/ENCFF435PZF/@@download/ENCFF435PZF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF726KGF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF929WYQ 1103569 ENCODE Processing Pipeline e698c3107e18b45db2062e7097479075 https://www.encodeproject.org/files/ENCFF726KGF/@@download/ENCFF726KGF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF632OFK bigWig signal p-value ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF113PPG, ENCFF478FRJ, ENCFF680VQE 680585681 ENCODE Processing Pipeline c0eb2d731aff6e7aa993048335f03b4a https://www.encodeproject.org/files/ENCFF632OFK/@@download/ENCFF632OFK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF110ALL bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF113PPG, ENCFF478FRJ 6417124 ENCODE Processing Pipeline 31ffeb235187eb9fc6d1edf9161daf4c https://www.encodeproject.org/files/ENCFF110ALL/@@download/ENCFF110ALL.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF065CIY bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF113PPG, ENCFF478FRJ, ENCFF680VQE 6998793 ENCODE Processing Pipeline ed84185b3821aeda4853d4951bc7e6ee https://www.encodeproject.org/files/ENCFF065CIY/@@download/ENCFF065CIY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF714ZND bigBed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF110ALL 11713495 ENCODE Processing Pipeline 2ed43671b22acf350bfe9b4f455cdca0 https://www.encodeproject.org/files/ENCFF714ZND/@@download/ENCFF714ZND.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF071QMQ bigBed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF639DZB 13259893 ENCODE Processing Pipeline 147c344fe298609d9353d6e903eb0a89 https://www.encodeproject.org/files/ENCFF071QMQ/@@download/ENCFF071QMQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF454DIK bigBed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF065CIY 12786689 ENCODE Processing Pipeline 900b0e9e256aa6226379b1b379fb7815 https://www.encodeproject.org/files/ENCFF454DIK/@@download/ENCFF454DIK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF020MBB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF992GIC 630934 ENCODE Processing Pipeline ab085164c329537d4815472ae1560c14 https://www.encodeproject.org/files/ENCFF020MBB/@@download/ENCFF020MBB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF412ACC bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041ZFB, ENCFF691TYS, ENCFF863QPG 6999131 ENCODE Processing Pipeline 05640ae4ba20d591c210c144345ca3dc https://www.encodeproject.org/files/ENCFF412ACC/@@download/ENCFF412ACC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF455WCH bigBed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF390NBA 13206132 ENCODE Processing Pipeline e959a34e6dde9109a854d729c0aac205 https://www.encodeproject.org/files/ENCFF455WCH/@@download/ENCFF455WCH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF492MZG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF853WQL 630517 ENCODE Processing Pipeline 220bbf59f95ce740fce955c0c153fedc https://www.encodeproject.org/files/ENCFF492MZG/@@download/ENCFF492MZG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF237GGQ bigWig signal p-value ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041ZFB, ENCFF863QPG 567977919 ENCODE Processing Pipeline 123efd6cf82789ea46d2e9b3b182a244 https://www.encodeproject.org/files/ENCFF237GGQ/@@download/ENCFF237GGQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF816YXJ bigWig signal p-value ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041ZFB, ENCFF691TYS, ENCFF863QPG 680976214 ENCODE Processing Pipeline fdf5b6d55ed881ba898bdb465ccfc71c https://www.encodeproject.org/files/ENCFF816YXJ/@@download/ENCFF816YXJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF814LSJ bigWig signal p-value ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF691TYS, ENCFF863QPG 474019669 ENCODE Processing Pipeline 84d5d119e1630f36d583c8ca0da3e68b https://www.encodeproject.org/files/ENCFF814LSJ/@@download/ENCFF814LSJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF152JEO bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF691TYS, ENCFF863QPG 6416592 ENCODE Processing Pipeline 50347953b53bde9e7a6c7f21c2092984 https://www.encodeproject.org/files/ENCFF152JEO/@@download/ENCFF152JEO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF390NBA bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041ZFB, ENCFF863QPG 6150432 ENCODE Processing Pipeline 9ced55e786aac370c68f2a0faf690ed2 https://www.encodeproject.org/files/ENCFF390NBA/@@download/ENCFF390NBA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF959LOI bigWig fold change over control ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF691TYS, ENCFF863QPG 284349170 ENCODE Processing Pipeline 6b344938a549e0724109a74b7f400bc5 https://www.encodeproject.org/files/ENCFF959LOI/@@download/ENCFF959LOI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF853WQL bed narrowPeak conservative idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF152JEO, ENCFF390NBA, ENCFF412ACC 262997 ENCODE Processing Pipeline dc7f9c89eff255c4b9df0aa6c7d542d1 https://www.encodeproject.org/files/ENCFF853WQL/@@download/ENCFF853WQL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF436YJR bigWig fold change over control ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041ZFB, ENCFF863QPG 577640673 ENCODE Processing Pipeline 8fa8aa261eb7bebac5d8db042b194468 https://www.encodeproject.org/files/ENCFF436YJR/@@download/ENCFF436YJR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF837XVA bigWig fold change over control ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF041ZFB, ENCFF691TYS, ENCFF863QPG 753055609 ENCODE Processing Pipeline c7927f62180581fa85246abedfea5a4e https://www.encodeproject.org/files/ENCFF837XVA/@@download/ENCFF837XVA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF180WRL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF606TCO 1106665 ENCODE Processing Pipeline 06c77688e5c1edbff4ebaf59a3d32f23 https://www.encodeproject.org/files/ENCFF180WRL/@@download/ENCFF180WRL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF873DMA bigBed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF152JEO 11714266 ENCODE Processing Pipeline 071a75621ea50b0eb6e00c5455dcc440 https://www.encodeproject.org/files/ENCFF873DMA/@@download/ENCFF873DMA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF606TCO bed narrowPeak optimal idr thresholded peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF152JEO, ENCFF390NBA, ENCFF412ACC 549407 ENCODE Processing Pipeline ef66cc29606f8a3b406239aed011c2d8 https://www.encodeproject.org/files/ENCFF606TCO/@@download/ENCFF606TCO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF527MDH bigBed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF412ACC 12785650 ENCODE Processing Pipeline 6fb4949e6a7b4362a5e094baf8a02a78 https://www.encodeproject.org/files/ENCFF527MDH/@@download/ENCFF527MDH.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000XLW bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XMS 269469374 Michael Snyder, Stanford 8db0093cabf9e881123c217e18dd7b72 https://www.encodeproject.org/files/ENCFF000XLW/@@download/ENCFF000XLW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XLX bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XMT 308080126 Michael Snyder, Stanford 68c5e23bc79e633aed2985c543b21796 https://www.encodeproject.org/files/ENCFF000XLX/@@download/ENCFF000XLX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XLY bigBed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJK 1302893 Michael Snyder, Stanford f171eae91c07f60f6cbce339858a9f08 https://www.encodeproject.org/files/ENCFF000XLY/@@download/ENCFF000XLY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XLZ bigWig signal ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 370427136 Michael Snyder, Stanford 669ee7b3253c21bab084d8e071c690b2 https://www.encodeproject.org/files/ENCFF000XLZ/@@download/ENCFF000XLZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000XMS fastq reads ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 928565002 Michael Snyder, Stanford d7be39fb42f6d217e7b080f776bd91da https://www.encodeproject.org/files/ENCFF000XMS/@@download/ENCFF000XMS.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XMT fastq reads ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1027463295 Michael Snyder, Stanford ef8b1c2df525e88473d1ef55f5fff19e https://www.encodeproject.org/files/ENCFF000XMT/@@download/ENCFF000XMT.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001VJK bed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 492314 Michael Snyder, Stanford 7020bc9623af948af4e34b74b1ded8e4 https://www.encodeproject.org/files/ENCFF001VJK/@@download/ENCFF001VJK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CTI bed narrowPeak optimal idr thresholded peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 461868 ENCODE Consortium Analysis Working Group 78449b084d8578fa46731cd08b9efba4 https://www.encodeproject.org/files/ENCFF002CTI/@@download/ENCFF002CTI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF603TAS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTI 1179779 ENCODE Consortium 2437e53a68e35bb60832b37949ef9085 https://www.encodeproject.org/files/ENCFF603TAS/@@download/ENCFF603TAS.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF747OAF bam unfiltered alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XMS, ENCFF643CGH 951373495 ENCODE Processing Pipeline e72fe7040898106c6de01edddbb7e754 https://www.encodeproject.org/files/ENCFF747OAF/@@download/ENCFF747OAF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF548TKC bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XMT, ENCFF643CGH 534390329 ENCODE Processing Pipeline 7551e4f5434269a5dbc1d50aa5bf2153 https://www.encodeproject.org/files/ENCFF548TKC/@@download/ENCFF548TKC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF378JPL bam unfiltered alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XMT, ENCFF643CGH 1057607858 ENCODE Processing Pipeline 4d34e31fe17d96ac03cb8855be8e20fc https://www.encodeproject.org/files/ENCFF378JPL/@@download/ENCFF378JPL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF923FWK bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XMS, ENCFF643CGH 480019689 ENCODE Processing Pipeline 43fff192d99dd30f02f37ff6a502c8e2 https://www.encodeproject.org/files/ENCFF923FWK/@@download/ENCFF923FWK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF982KHU bigWig fold change over control ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436WVQ, ENCFF923FWK 304984764 ENCODE Processing Pipeline 3e41074fe50a97f596aefc3d41c8b5f2 https://www.encodeproject.org/files/ENCFF982KHU/@@download/ENCFF982KHU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF237THN bed narrowPeak conservative idr thresholded peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF274GUO, ENCFF419RSJ, ENCFF673CEF, ENCFF944ZYO 414414 ENCODE Processing Pipeline 7a6e83d956f8569f5090667ff9e38bab https://www.encodeproject.org/files/ENCFF237THN/@@download/ENCFF237THN.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF274GUO bed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436WVQ, ENCFF923FWK 5016250 ENCODE Processing Pipeline 17dbe9147f1ce2111524b55f3e110fa5 https://www.encodeproject.org/files/ENCFF274GUO/@@download/ENCFF274GUO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF052OHA bigWig signal p-value ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436WVQ, ENCFF548TKC 489034709 ENCODE Processing Pipeline 812ed041aa83df33cdf3303435858c12 https://www.encodeproject.org/files/ENCFF052OHA/@@download/ENCFF052OHA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF240CPY bigWig signal p-value ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436WVQ, ENCFF548TKC, ENCFF923FWK 553697613 ENCODE Processing Pipeline 4fb94c384959bf631dc38b7f18b2eea4 https://www.encodeproject.org/files/ENCFF240CPY/@@download/ENCFF240CPY.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF944ZYO bed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436WVQ, ENCFF548TKC 5139330 ENCODE Processing Pipeline db14d3fa04f0f8e5566b9718add95e88 https://www.encodeproject.org/files/ENCFF944ZYO/@@download/ENCFF944ZYO.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF831MMX bigBed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF274GUO 10998905 ENCODE Processing Pipeline e1f3c939ebdb75b94e7c92d3c0e2c146 https://www.encodeproject.org/files/ENCFF831MMX/@@download/ENCFF831MMX.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF182VXC bigWig fold change over control ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436WVQ, ENCFF548TKC 340901349 ENCODE Processing Pipeline 67d8bbc51961c863bd9833842c40a48c https://www.encodeproject.org/files/ENCFF182VXC/@@download/ENCFF182VXC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF859VTH bigWig signal p-value ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436WVQ, ENCFF923FWK 491243660 ENCODE Processing Pipeline c03072effa35833de43792f43570c70a https://www.encodeproject.org/files/ENCFF859VTH/@@download/ENCFF859VTH.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF673CEF bed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436WVQ, ENCFF548TKC, ENCFF923FWK 5659542 ENCODE Processing Pipeline 6668bc53684b7b16caac76d4372a3001 https://www.encodeproject.org/files/ENCFF673CEF/@@download/ENCFF673CEF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952JSA bigBed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF944ZYO 11100199 ENCODE Processing Pipeline 94cb377b00c0f6ae9581350ee9c3b2aa https://www.encodeproject.org/files/ENCFF952JSA/@@download/ENCFF952JSA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF479XFB bigBed narrowPeak peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF673CEF 13529823 ENCODE Processing Pipeline 42aea2ed98235c93206c693306702417 https://www.encodeproject.org/files/ENCFF479XFB/@@download/ENCFF479XFB.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF302RQH bed narrowPeak optimal idr thresholded peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF274GUO, ENCFF419RSJ, ENCFF673CEF, ENCFF944ZYO 452610 ENCODE Processing Pipeline a2cb58b3471b419d810c97841bf28636 https://www.encodeproject.org/files/ENCFF302RQH/@@download/ENCFF302RQH.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF613BCN bigWig fold change over control ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF436WVQ, ENCFF548TKC, ENCFF923FWK 545795278 ENCODE Processing Pipeline c7f9b69ddc9cafd521cd3d33e89fa08f https://www.encodeproject.org/files/ENCFF613BCN/@@download/ENCFF613BCN.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388FMU bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF237THN 849766 ENCODE Processing Pipeline bf65c5320d525b81ca9050b32e447a4a https://www.encodeproject.org/files/ENCFF388FMU/@@download/ENCFF388FMU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF980ZNY bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF302RQH 908131 ENCODE Processing Pipeline aa7904abbab671d4f7c7f932a0e927dc https://www.encodeproject.org/files/ENCFF980ZNY/@@download/ENCFF980ZNY.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MZP bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF000MZX 948010282 Richard Myers, HAIB 3897aa3d15358095bf44f6b7056820bb https://www.encodeproject.org/files/ENCFF000MZP/@@download/ENCFF000MZP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MZQ bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF000NAA 705843644 Richard Myers, HAIB 26543d457be1318fefdde7aae7b81366 https://www.encodeproject.org/files/ENCFF000MZQ/@@download/ENCFF000MZQ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MZR bigBed broadPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 1 ENCFF001TSF 143092 Richard Myers, HAIB 3e9cf1ca58dfca68f8b4849dfbcef20d https://www.encodeproject.org/files/ENCFF000MZR/@@download/ENCFF000MZR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MZS bigBed broadPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF001TSG 158050 Richard Myers, HAIB f9976339d3fca110d77eb36abe8de7a6 https://www.encodeproject.org/files/ENCFF000MZS/@@download/ENCFF000MZS.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MZU bigWig raw signal ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 1 24591006 Richard Myers, HAIB 33bd64d6f51cc7686411ff694017abf3 https://www.encodeproject.org/files/ENCFF000MZU/@@download/ENCFF000MZU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000MZV bigWig raw signal ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 1 19942024 Richard Myers, HAIB c5460dd41c856ba07a12ba10b741b7f4 https://www.encodeproject.org/files/ENCFF000MZV/@@download/ENCFF000MZV.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000MZX fastq reads ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 1 36 single-ended 855755233 Richard Myers, HAIB 9f04c2fc914d74dc9380e7f61140347f https://www.encodeproject.org/files/ENCFF000MZX/@@download/ENCFF000MZX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NAI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NAA fastq reads ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 1 36 single-ended 611684293 Richard Myers, HAIB 5539e58f145db47b94d96552f422c65d https://www.encodeproject.org/files/ENCFF000NAA/@@download/ENCFF000NAA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NAH/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF001TSF bed broadPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 1 50889 Richard Myers, HAIB a59f2fa316c975c380ba37786215e3ff https://www.encodeproject.org/files/ENCFF001TSF/@@download/ENCFF001TSF.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001TSG bed broadPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 1 59563 Richard Myers, HAIB 84231efff23f7973548c830e59e5d1a5 https://www.encodeproject.org/files/ENCFF001TSG/@@download/ENCFF001TSG.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF002CFO bed narrowPeak optimal idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 204700 ENCODE Consortium Analysis Working Group c0c762bbe57d6947f4cf6f91af263c70 https://www.encodeproject.org/files/ENCFF002CFO/@@download/ENCFF002CFO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF507EQC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE ENCFF002CFO 590600 ENCODE Consortium e63b364a03a0d40228ece7d1b6918136 https://www.encodeproject.org/files/ENCFF507EQC/@@download/ENCFF507EQC.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF979UTR bam unfiltered alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAA, ENCFF643CGH 821843615 ENCODE Processing Pipeline 0bcec409b4386115b690c6a01661b2ab https://www.encodeproject.org/files/ENCFF979UTR/@@download/ENCFF979UTR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF946SJM bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAA, ENCFF643CGH 523936487 ENCODE Processing Pipeline 2f756348abf7924828cdbfcafc9e7844 https://www.encodeproject.org/files/ENCFF946SJM/@@download/ENCFF946SJM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF522ITC bam unfiltered alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZX, ENCFF643CGH 1128020733 ENCODE Processing Pipeline c5addbc138fd3bd99a03846daf2873a4 https://www.encodeproject.org/files/ENCFF522ITC/@@download/ENCFF522ITC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF086NWX bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZX, ENCFF643CGH 653194705 ENCODE Processing Pipeline adc2880968b9e1b71b169f8bf8437cf3 https://www.encodeproject.org/files/ENCFF086NWX/@@download/ENCFF086NWX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF380FAD bam unfiltered alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAA, ENCFF807MUK 818492274 ENCODE Processing Pipeline aff19bad0cc241043018c381baa28b38 https://www.encodeproject.org/files/ENCFF380FAD/@@download/ENCFF380FAD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF844ECI bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAA, ENCFF807MUK 524166209 ENCODE Processing Pipeline b931f417a0adc54564c8d14952275a2c https://www.encodeproject.org/files/ENCFF844ECI/@@download/ENCFF844ECI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF741QQZ bam unfiltered alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZX, ENCFF807MUK 1121998687 ENCODE Processing Pipeline 98973847b86fc67e8c7a79d75327a0e6 https://www.encodeproject.org/files/ENCFF741QQZ/@@download/ENCFF741QQZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF288LFN bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZX, ENCFF807MUK 653405776 ENCODE Processing Pipeline bfb61cc3a27fc67b221d564673121c1c https://www.encodeproject.org/files/ENCFF288LFN/@@download/ENCFF288LFN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF391XNE bigWig signal p-value ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF086NWX, ENCFF285GBC, ENCFF325BGM 497786954 ENCODE Processing Pipeline 86b652d2cd58a938f2644a23e23069bf https://www.encodeproject.org/files/ENCFF391XNE/@@download/ENCFF391XNE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF657JGX bigWig signal p-value ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF285GBC, ENCFF325BGM, ENCFF946SJM 525227202 ENCODE Processing Pipeline 1691717338a609f0c47a9c5ea52acc71 https://www.encodeproject.org/files/ENCFF657JGX/@@download/ENCFF657JGX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF151ELU bigWig signal p-value ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF086NWX, ENCFF285GBC, ENCFF325BGM, ENCFF946SJM 640887229 ENCODE Processing Pipeline 095c8a60e9055e874a50846e653ba2e5 https://www.encodeproject.org/files/ENCFF151ELU/@@download/ENCFF151ELU.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF360ZUI bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF285GBC, ENCFF325BGM, ENCFF946SJM 4586855 ENCODE Processing Pipeline a079b2992b1d17394e039f5b154eefad https://www.encodeproject.org/files/ENCFF360ZUI/@@download/ENCFF360ZUI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF283SQY bigWig fold change over control ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF285GBC, ENCFF325BGM, ENCFF946SJM 352408261 ENCODE Processing Pipeline 94cbe9287619f7e8b69a813f4d5ccb33 https://www.encodeproject.org/files/ENCFF283SQY/@@download/ENCFF283SQY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF781GKO bigWig fold change over control ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF086NWX, ENCFF285GBC, ENCFF325BGM 426316657 ENCODE Processing Pipeline 7a86d0fb35e0e31d8e3df45d9a3c7077 https://www.encodeproject.org/files/ENCFF781GKO/@@download/ENCFF781GKO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF020CLB bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF086NWX, ENCFF285GBC, ENCFF325BGM 4384684 ENCODE Processing Pipeline d2fefe7ccbcb3aabd92d4cc4e0e7f884 https://www.encodeproject.org/files/ENCFF020CLB/@@download/ENCFF020CLB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF204MVK bed narrowPeak conservative idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF020CLB, ENCFF360ZUI, ENCFF419RSJ, ENCFF776JXN 131425 ENCODE Processing Pipeline 1caea240ba3a72f5d5742a55e510d77d https://www.encodeproject.org/files/ENCFF204MVK/@@download/ENCFF204MVK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF113NFH bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF204MVK 302764 ENCODE Processing Pipeline 8aa339f2b972f4a6ef592bb59a81ad4a https://www.encodeproject.org/files/ENCFF113NFH/@@download/ENCFF113NFH.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF865MYW bigWig fold change over control ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF086NWX, ENCFF285GBC, ENCFF325BGM, ENCFF946SJM 635548512 ENCODE Processing Pipeline 934518c5d1860ad19ad553175f4d6697 https://www.encodeproject.org/files/ENCFF865MYW/@@download/ENCFF865MYW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF776JXN bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF086NWX, ENCFF285GBC, ENCFF325BGM, ENCFF946SJM 5217110 ENCODE Processing Pipeline 46b1433ee3305c0057e96f093106fd4e https://www.encodeproject.org/files/ENCFF776JXN/@@download/ENCFF776JXN.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF307CHY bigBed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF776JXN 11335734 ENCODE Processing Pipeline a8fc1777bb7621f874fc55ec62ab0585 https://www.encodeproject.org/files/ENCFF307CHY/@@download/ENCFF307CHY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF167BKY bed narrowPeak optimal idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF020CLB, ENCFF360ZUI, ENCFF419RSJ, ENCFF776JXN 161457 ENCODE Processing Pipeline b945dd19b97b57d0deb565923a6f415b https://www.encodeproject.org/files/ENCFF167BKY/@@download/ENCFF167BKY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF554RKL bigBed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF020CLB 10691175 ENCODE Processing Pipeline 4b6e29e43e34602a35d80f3f23730535 https://www.encodeproject.org/files/ENCFF554RKL/@@download/ENCFF554RKL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF212BVS bigBed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF360ZUI 10486254 ENCODE Processing Pipeline 12ce9e4e59cffd209f01a19bebc04165 https://www.encodeproject.org/files/ENCFF212BVS/@@download/ENCFF212BVS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF996AUB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF167BKY 351271 ENCODE Processing Pipeline cd31a754a0713773830606e8642be85b https://www.encodeproject.org/files/ENCFF996AUB/@@download/ENCFF996AUB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF762IDI bigWig signal p-value ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF288LFN, ENCFF336HSE, ENCFF879AJU 503055321 ENCODE Processing Pipeline fb3c1c91165d3d106236672b053485b2 https://www.encodeproject.org/files/ENCFF762IDI/@@download/ENCFF762IDI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF262JYS bigWig fold change over control ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF288LFN, ENCFF336HSE, ENCFF879AJU 429933384 ENCODE Processing Pipeline 1ca3a256b0f82c71a1b2e7afb387b3bb https://www.encodeproject.org/files/ENCFF262JYS/@@download/ENCFF262JYS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF717LFU bigWig signal p-value ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 525983562 ENCODE Processing Pipeline 72bfc0d5f26b6a7ffe8a122287bd2c17 https://www.encodeproject.org/files/ENCFF717LFU/@@download/ENCFF717LFU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF675ONS bigWig signal p-value ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF288LFN, ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 640714856 ENCODE Processing Pipeline 2982623103118d2e4683e24e012c53e2 https://www.encodeproject.org/files/ENCFF675ONS/@@download/ENCFF675ONS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF808LMR bigWig fold change over control ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 350304535 ENCODE Processing Pipeline e3ab00283ab62c280bb571a47847821e https://www.encodeproject.org/files/ENCFF808LMR/@@download/ENCFF808LMR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF953BDX bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF288LFN, ENCFF336HSE, ENCFF879AJU 4385160 ENCODE Processing Pipeline 8bf42a4751560997619f11832667ba1f https://www.encodeproject.org/files/ENCFF953BDX/@@download/ENCFF953BDX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF511TWR bigWig fold change over control ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF288LFN, ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 638644811 ENCODE Processing Pipeline 683ce9e7959b5a8387ac2d777f13bcad https://www.encodeproject.org/files/ENCFF511TWR/@@download/ENCFF511TWR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF432ZAJ bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 4588028 ENCODE Processing Pipeline 3eb617841a00bc517609b1395beacdb2 https://www.encodeproject.org/files/ENCFF432ZAJ/@@download/ENCFF432ZAJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF146BSS bigBed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF432ZAJ 10479455 ENCODE Processing Pipeline ec716989698c5fa3df99a242d49f3168 https://www.encodeproject.org/files/ENCFF146BSS/@@download/ENCFF146BSS.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF370FSJ bigBed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF953BDX 10689621 ENCODE Processing Pipeline a94f408fac140ccb7641334d5249c038 https://www.encodeproject.org/files/ENCFF370FSJ/@@download/ENCFF370FSJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF119XQX bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF288LFN, ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 5219576 ENCODE Processing Pipeline a00dd76504a6d2fd12145756ee63fecd https://www.encodeproject.org/files/ENCFF119XQX/@@download/ENCFF119XQX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF879TZL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF441MEM 350968 ENCODE Processing Pipeline e053fe3736cd296f8052f766c86d68ea https://www.encodeproject.org/files/ENCFF879TZL/@@download/ENCFF879TZL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF059BCB bigBed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF119XQX 11333621 ENCODE Processing Pipeline 1712c6478e716b7b7704d76bbb4e6b63 https://www.encodeproject.org/files/ENCFF059BCB/@@download/ENCFF059BCB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF441MEM bed narrowPeak optimal idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF119XQX, ENCFF432ZAJ, ENCFF953BDX 161662 ENCODE Processing Pipeline 8ae46d4df8dd7ba66eab83564b22fbda https://www.encodeproject.org/files/ENCFF441MEM/@@download/ENCFF441MEM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF480MZT bed narrowPeak conservative idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF001TDO, ENCFF119XQX, ENCFF432ZAJ, ENCFF953BDX 131736 ENCODE Processing Pipeline 418155cbb8c403ac95a5c558b1574614 https://www.encodeproject.org/files/ENCFF480MZT/@@download/ENCFF480MZT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF918HQZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF480MZT 302929 ENCODE Processing Pipeline 1787185616c362219c8fa099296f1e6d https://www.encodeproject.org/files/ENCFF918HQZ/@@download/ENCFF918HQZ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HPN bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPY 457674081 John Stamatoyannopoulos, UW 76133e131a2bbae141eab7746a27043c https://www.encodeproject.org/files/ENCFF001HPN/@@download/ENCFF001HPN.bam hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPO bigBed broadPeak hotspots ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRP 2991743 John Stamatoyannopoulos, UW 8815d735f899e86fa12c1f90cf919114 https://www.encodeproject.org/files/ENCFF001HPO/@@download/ENCFF001HPO.bigBed hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPP bigBed broadPeak hotspots ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XRQ 4700201 John Stamatoyannopoulos, UW 2d19e02d78d65cdb1fbf43c46dc266d1 https://www.encodeproject.org/files/ENCFF001HPP/@@download/ENCFF001HPP.bigBed hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPQ bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XRR 1044287 John Stamatoyannopoulos, UW 9bcf2afee0cc5ab71a81831ab34e9986 https://www.encodeproject.org/files/ENCFF001HPQ/@@download/ENCFF001HPQ.bigBed hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPR bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XRS 1549110 John Stamatoyannopoulos, UW f4680ee6c55f8d4b3c748c0dd4fc3dd9 https://www.encodeproject.org/files/ENCFF001HPR/@@download/ENCFF001HPR.bigBed hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPS bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPZ 1017720631 John Stamatoyannopoulos, UW d97989193947522b638a926b92ed1cae https://www.encodeproject.org/files/ENCFF001HPS/@@download/ENCFF001HPS.bam hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPT bigWig raw signal ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPN 90664301 John Stamatoyannopoulos, UW faf0c4fd8da95649af7196fdadaaadb4 https://www.encodeproject.org/files/ENCFF001HPT/@@download/ENCFF001HPT.bigWig hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPV bigWig raw signal ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPS 162762563 John Stamatoyannopoulos, UW 03eaf6817a9682ba4dd741a3454d6342 https://www.encodeproject.org/files/ENCFF001HPV/@@download/ENCFF001HPV.bigWig hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPY fastq reads ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 492338032 John Stamatoyannopoulos, UW 44c92b78b270b3805d781d60e9376f07 https://www.encodeproject.org/files/ENCFF001HPY/@@download/ENCFF001HPY.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HQI/ released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001HPZ fastq reads ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1118095605 John Stamatoyannopoulos, UW a0947c3121e03c81340f08c850b742c7 https://www.encodeproject.org/files/ENCFF001HPZ/@@download/ENCFF001HPZ.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HQI/ released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001XRP bed broadPeak hotspots ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPN 2062596 John Stamatoyannopoulos, UW 7f086fa5b29ecc4dc2965e98ac1d4977 https://www.encodeproject.org/files/ENCFF001XRP/@@download/ENCFF001XRP.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001XRQ bed broadPeak hotspots ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPS 2481593 John Stamatoyannopoulos, UW 8d5caf332ee9f7f36e569927ed360b90 https://www.encodeproject.org/files/ENCFF001XRQ/@@download/ENCFF001XRQ.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001XRR bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPN 730930 John Stamatoyannopoulos, UW bb19ea2d1c5d3eb8f361cfed950e06e3 https://www.encodeproject.org/files/ENCFF001XRR/@@download/ENCFF001XRR.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF001XRS bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPS 914710 John Stamatoyannopoulos, UW e4941c4dd7c4f1b48e64f78b287a894a https://www.encodeproject.org/files/ENCFF001XRS/@@download/ENCFF001XRS.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF002DDC bed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HPN, ENCFF001HPS 1096364 ENCODE Consortium Analysis Working Group e8eaeec69dc33f8f1e7163092af40675 https://www.encodeproject.org/files/ENCFF002DDC/@@download/ENCFF002DDC.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF303IDW bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDC 2238901 ENCODE Consortium 2a94b7b85ce1702e306349b28b8fdc2a https://www.encodeproject.org/files/ENCFF303IDW/@@download/ENCFF303IDW.bigBed hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF479TDX bam unfiltered alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPY, ENCFF643CGH 568512476 ENCODE Processing Pipeline 42e83c13f9bd2d403965d252a024fd97 https://www.encodeproject.org/files/ENCFF479TDX/@@download/ENCFF479TDX.bam GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF149SVY bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPY, ENCFF643CGH 387848734 ENCODE Processing Pipeline ab69887f554e8b46faf51d9b256fac8a https://www.encodeproject.org/files/ENCFF149SVY/@@download/ENCFF149SVY.bam GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF792BVP bam unfiltered alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HPZ, ENCFF643CGH 1273690017 ENCODE Processing Pipeline c0ad71ea6416e8265ee356e2676b71b9 https://www.encodeproject.org/files/ENCFF792BVP/@@download/ENCFF792BVP.bam GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF161AGR bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HPZ, ENCFF643CGH 826723641 ENCODE Processing Pipeline 3761ba7c95f7c3aa65ea6fc1d071f417 https://www.encodeproject.org/files/ENCFF161AGR/@@download/ENCFF161AGR.bam GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF114PLD bam unfiltered alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPY, ENCFF807MUK 567057740 ENCODE Processing Pipeline 981325e15c0d599699a9fceae8944af6 https://www.encodeproject.org/files/ENCFF114PLD/@@download/ENCFF114PLD.bam hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF318TMO bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPY, ENCFF807MUK 387979875 ENCODE Processing Pipeline 58d06959a47c8848135f823d9ba33907 https://www.encodeproject.org/files/ENCFF318TMO/@@download/ENCFF318TMO.bam hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF747ZGZ bam unfiltered alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HPZ, ENCFF807MUK 1269422245 ENCODE Processing Pipeline fdd935ab4ccf0159b7708e80a16b9b3f https://www.encodeproject.org/files/ENCFF747ZGZ/@@download/ENCFF747ZGZ.bam hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF393HXD bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HPZ, ENCFF807MUK 827038810 ENCODE Processing Pipeline 2daf7052c6027f65c8f5fb5bccf413e5 https://www.encodeproject.org/files/ENCFF393HXD/@@download/ENCFF393HXD.bam hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF195GCM bigWig signal p-value ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF149SVY, ENCFF161AGR, ENCFF272GNJ 159205696 ENCODE Processing Pipeline 841b1cf126e609cb1cbbf81d74e6f9f6 https://www.encodeproject.org/files/ENCFF195GCM/@@download/ENCFF195GCM.bigWig GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF392OUC bigWig signal p-value ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF161AGR, ENCFF272GNJ 163280497 ENCODE Processing Pipeline 4cb070288ce8ead12382d28194552d5e https://www.encodeproject.org/files/ENCFF392OUC/@@download/ENCFF392OUC.bigWig GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF929VZY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF196CRQ 1426775 ENCODE Processing Pipeline bebb4dc7d1055000a26ad25afc39f1b9 https://www.encodeproject.org/files/ENCFF929VZY/@@download/ENCFF929VZY.bigBed GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF868YMU bigWig signal p-value ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF149SVY, ENCFF272GNJ 168598917 ENCODE Processing Pipeline ea284f5b3cbafb6b4d66f7133914dacd https://www.encodeproject.org/files/ENCFF868YMU/@@download/ENCFF868YMU.bigWig GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF813VGX bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF836OOE 10264755 ENCODE Processing Pipeline f8ee7325b7cc73083a65bf5e2355dd5f https://www.encodeproject.org/files/ENCFF813VGX/@@download/ENCFF813VGX.bigBed GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF947ZJU bigWig fold change over control ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF149SVY, ENCFF272GNJ 118327663 ENCODE Processing Pipeline 4f1679af92367327e58a5888308cf183 https://www.encodeproject.org/files/ENCFF947ZJU/@@download/ENCFF947ZJU.bigWig GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF951TDI bigWig fold change over control ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF161AGR, ENCFF272GNJ 228874465 ENCODE Processing Pipeline 00b0ba5553e68fad389c795b90ba9d01 https://www.encodeproject.org/files/ENCFF951TDI/@@download/ENCFF951TDI.bigWig GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF836OOE bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF149SVY, ENCFF161AGR, ENCFF272GNJ 4176140 ENCODE Processing Pipeline 9d63b29202b0ebf897af34d5880df505 https://www.encodeproject.org/files/ENCFF836OOE/@@download/ENCFF836OOE.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF953FFA bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF152YHL 7667878 ENCODE Processing Pipeline 816be896cda6bd416802bd20254df0db https://www.encodeproject.org/files/ENCFF953FFA/@@download/ENCFF953FFA.bigBed GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF196CRQ bed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF152YHL, ENCFF257JPC, ENCFF419RSJ, ENCFF836OOE 813731 ENCODE Processing Pipeline be72a186db2ef29ae0d6056208f1a60a https://www.encodeproject.org/files/ENCFF196CRQ/@@download/ENCFF196CRQ.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF816IUS bigWig fold change over control ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF149SVY, ENCFF161AGR, ENCFF272GNJ 316020817 ENCODE Processing Pipeline 4631fbd4d77b4c8aeaae79c4c27affc9 https://www.encodeproject.org/files/ENCFF816IUS/@@download/ENCFF816IUS.bigWig GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF257JPC bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF149SVY, ENCFF272GNJ 2379656 ENCODE Processing Pipeline 6a2d4c5871c2d47b2271fbf3caed2d33 https://www.encodeproject.org/files/ENCFF257JPC/@@download/ENCFF257JPC.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF152YHL bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF161AGR, ENCFF272GNJ 3861784 ENCODE Processing Pipeline cdac5202649dd8df8f7774cd6662e986 https://www.encodeproject.org/files/ENCFF152YHL/@@download/ENCFF152YHL.bed.gz GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF477DVL bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF257JPC 4991765 ENCODE Processing Pipeline 083f3a3ba8496a91e55904b75b5d86e1 https://www.encodeproject.org/files/ENCFF477DVL/@@download/ENCFF477DVL.bigBed GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF090XCI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF318TMO, ENCFF628PKL 2393589 ENCODE Processing Pipeline 1e2e1827152f9524fa34f6dc40eb8e63 https://www.encodeproject.org/files/ENCFF090XCI/@@download/ENCFF090XCI.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF703PHI bigWig fold change over control ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF318TMO, ENCFF628PKL 118374330 ENCODE Processing Pipeline 14f0162e092d44f735b3d5fd9cc54a5b https://www.encodeproject.org/files/ENCFF703PHI/@@download/ENCFF703PHI.bigWig hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF863CRP bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF090XCI 5013154 ENCODE Processing Pipeline 49afa779862d7ecbb28b69b626992335 https://www.encodeproject.org/files/ENCFF863CRP/@@download/ENCFF863CRP.bigBed hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF279QNI bigWig fold change over control ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF318TMO, ENCFF393HXD, ENCFF628PKL 315939751 ENCODE Processing Pipeline e6f82eb8a192e41b71b8efd1484b12b6 https://www.encodeproject.org/files/ENCFF279QNI/@@download/ENCFF279QNI.bigWig hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF681HOI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF393HXD, ENCFF628PKL 3876040 ENCODE Processing Pipeline 37fe4fb77504747cd446d054bac925cf https://www.encodeproject.org/files/ENCFF681HOI/@@download/ENCFF681HOI.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF438XHB bed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF090XCI, ENCFF681HOI, ENCFF831MNI 812710 ENCODE Processing Pipeline f427a82e1ac58a95b8ba78e63a5fed5b https://www.encodeproject.org/files/ENCFF438XHB/@@download/ENCFF438XHB.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF261JWI bigWig signal p-value ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF318TMO, ENCFF628PKL 168629103 ENCODE Processing Pipeline fbce8d420bbc77924b180dcace9fe3d1 https://www.encodeproject.org/files/ENCFF261JWI/@@download/ENCFF261JWI.bigWig hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF341JIW bigWig signal p-value ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF393HXD, ENCFF628PKL 163404683 ENCODE Processing Pipeline 918cc4bebda155201a54356b1729fb26 https://www.encodeproject.org/files/ENCFF341JIW/@@download/ENCFF341JIW.bigWig hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF897LBF bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF831MNI 10263926 ENCODE Processing Pipeline 20c68d6bfa8675c0f698fc1d82f2151f https://www.encodeproject.org/files/ENCFF897LBF/@@download/ENCFF897LBF.bigBed hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF246GIL bigWig signal p-value ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF318TMO, ENCFF393HXD, ENCFF628PKL 159309453 ENCODE Processing Pipeline a5452ac63557cc6cd81c62907d43e80f https://www.encodeproject.org/files/ENCFF246GIL/@@download/ENCFF246GIL.bigWig hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF758BYK bigWig fold change over control ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF393HXD, ENCFF628PKL 230384088 ENCODE Processing Pipeline 70b97c0108b3353d1facc5e5d2b21508 https://www.encodeproject.org/files/ENCFF758BYK/@@download/ENCFF758BYK.bigWig hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF831MNI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF318TMO, ENCFF393HXD, ENCFF628PKL 4178221 ENCODE Processing Pipeline e767ee20d668de50b9578fdb608dae86 https://www.encodeproject.org/files/ENCFF831MNI/@@download/ENCFF831MNI.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF919SKA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF438XHB 1425527 ENCODE Processing Pipeline b54ef28478b9ff3758350bdabfd61c76 https://www.encodeproject.org/files/ENCFF919SKA/@@download/ENCFF919SKA.bigBed hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF934HRN bigBed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF681HOI 7696191 ENCODE Processing Pipeline 178a4452c951382eaf4d8e1a0bd1ad15 https://www.encodeproject.org/files/ENCFF934HRN/@@download/ENCFF934HRN.bigBed hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF000ONC bigBed broadPeak peaks ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UAY 390496 Richard Myers, HAIB 3d4d1a78b2f57dca93a2de0a8cc7d8be https://www.encodeproject.org/files/ENCFF000ONC/@@download/ENCFF000ONC.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000OND bigBed broadPeak peaks ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UAZ 330547 Richard Myers, HAIB b0d31a91d3593aa98b21db1ed6c1a28b https://www.encodeproject.org/files/ENCFF000OND/@@download/ENCFF000OND.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONE bam alignments ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000ONS 1519907558 Richard Myers, HAIB 19564cf5135901ceaa40a948b96c52e7 https://www.encodeproject.org/files/ENCFF000ONE/@@download/ENCFF000ONE.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONF bam alignments ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000ONP 1744656070 Richard Myers, HAIB a73b593b8e4ae50075d670627815579b https://www.encodeproject.org/files/ENCFF000ONF/@@download/ENCFF000ONF.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONG bigWig raw signal ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 237217092 Richard Myers, HAIB a04fc8d35e15d270eb4b8fbc6afe1a30 https://www.encodeproject.org/files/ENCFF000ONG/@@download/ENCFF000ONG.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000ONJ bigWig raw signal ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 273337378 Richard Myers, HAIB d2ba803d7ee3bdfca76c1ab7ab7a8870 https://www.encodeproject.org/files/ENCFF000ONJ/@@download/ENCFF000ONJ.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000ONP fastq reads ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1794750581 Richard Myers, HAIB 26d784072d8c22e6f03baed37b7ead3c https://www.encodeproject.org/files/ENCFF000ONP/@@download/ENCFF000ONP.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OST/ released inconsistent platforms biological replicates with identical biosample ENCFF000ONS fastq reads ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1561475293 Richard Myers, HAIB 1113171abba1f4fd26da3ee8dae354f7 https://www.encodeproject.org/files/ENCFF000ONS/@@download/ENCFF000ONS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OST/ released inconsistent platforms biological replicates with identical biosample ENCFF001UAY bed broadPeak peaks ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 194495 Richard Myers, HAIB 9902db8cd26779221d63bd998e219b8a https://www.encodeproject.org/files/ENCFF001UAY/@@download/ENCFF001UAY.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UAZ bed broadPeak peaks ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 159134 Richard Myers, HAIB 7832ec326f88c5be06aa6fbae95884d0 https://www.encodeproject.org/files/ENCFF001UAZ/@@download/ENCFF001UAZ.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF517QCO fastq reads ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 1 36 single-ended 1084288942 Bradley Bernstein, Broad a2d87544bec74dc9d821ac5f922ed575 https://www.encodeproject.org/files/ENCFF517QCO/@@download/ENCFF517QCO.fastq.gz Illumina HiSeq 2000 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF420XPW fastq reads ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 1 36 single-ended 1234732130 Bradley Bernstein, Broad a553e2db07c872f15d4c6d16181cebf2 https://www.encodeproject.org/files/ENCFF420XPW/@@download/ENCFF420XPW.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF477OGV bam unfiltered alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 36 ENCFF420XPW, ENCFF807MUK 1533963004 ENCODE Processing Pipeline e2b536f1c5f2bc789930328bf01ed2b1 https://www.encodeproject.org/files/ENCFF477OGV/@@download/ENCFF477OGV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF493YQC bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 36 ENCFF517QCO, ENCFF807MUK 879823958 ENCODE Processing Pipeline 48f0ea85731beb0c3b9a0e3078b7a4ff https://www.encodeproject.org/files/ENCFF493YQC/@@download/ENCFF493YQC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF262QYW bam unfiltered alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 36 ENCFF517QCO, ENCFF643CGH 1441577209 ENCODE Processing Pipeline d4ab44729179f984b0e15fe9320b921b https://www.encodeproject.org/files/ENCFF262QYW/@@download/ENCFF262QYW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF980QXM bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 36 ENCFF420XPW, ENCFF807MUK 431791105 ENCODE Processing Pipeline e043839563eb971fbd95d1bca912542c https://www.encodeproject.org/files/ENCFF980QXM/@@download/ENCFF980QXM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF246RPY bam unfiltered alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 36 ENCFF420XPW, ENCFF643CGH 1540478635 ENCODE Processing Pipeline f3be4f86f73f17ef25ffc4edd5a4337e https://www.encodeproject.org/files/ENCFF246RPY/@@download/ENCFF246RPY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF180DGV bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 36 ENCFF420XPW, ENCFF643CGH 431439741 ENCODE Processing Pipeline dcae349866776bfc1dd9afd37e9c7b25 https://www.encodeproject.org/files/ENCFF180DGV/@@download/ENCFF180DGV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF189WJE bam unfiltered alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 36 ENCFF517QCO, ENCFF807MUK 1433231800 ENCODE Processing Pipeline acc882b7d772739edba5f2b9498f6a60 https://www.encodeproject.org/files/ENCFF189WJE/@@download/ENCFF189WJE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF354ELR bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 36 ENCFF517QCO, ENCFF643CGH 879858501 ENCODE Processing Pipeline 1c3c567156dc2043e496ca4630370452 https://www.encodeproject.org/files/ENCFF354ELR/@@download/ENCFF354ELR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF395TQV bigWig signal p-value ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW 1849905150 ENCODE Processing Pipeline dd01d8a28315ad519ba5f8bb18d62fca https://www.encodeproject.org/files/ENCFF395TQV/@@download/ENCFF395TQV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF829KCU bigWig signal p-value ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF980QXM 1641259801 ENCODE Processing Pipeline f6b2a199622b12b658917dd861f07e64 https://www.encodeproject.org/files/ENCFF829KCU/@@download/ENCFF829KCU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF780YIX bigWig signal p-value ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW, ENCFF980QXM 1948023327 ENCODE Processing Pipeline b6377a0512a865e613064c5d54df8733 https://www.encodeproject.org/files/ENCFF780YIX/@@download/ENCFF780YIX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF885QQF bigWig fold change over control ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW 1191352466 ENCODE Processing Pipeline f1a21221408ef2e73a184d4ba54a64b8 https://www.encodeproject.org/files/ENCFF885QQF/@@download/ENCFF885QQF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF004DTP bigWig fold change over control ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF980QXM 832287335 ENCODE Processing Pipeline 5004339301668080a7811748c2e421ea https://www.encodeproject.org/files/ENCFF004DTP/@@download/ENCFF004DTP.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF377LKC bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW 6652352 ENCODE Processing Pipeline 882e2b68361a10f4be5370cb66bc15bc https://www.encodeproject.org/files/ENCFF377LKC/@@download/ENCFF377LKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF639ATT bigBed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF377LKC 13309440 ENCODE Processing Pipeline feb91ca0ba72332a7e7a954912d552ff https://www.encodeproject.org/files/ENCFF639ATT/@@download/ENCFF639ATT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF121NTB bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW, ENCFF980QXM 7193712 ENCODE Processing Pipeline 12d2efd0a123c9c5cc063dc58079c57c https://www.encodeproject.org/files/ENCFF121NTB/@@download/ENCFF121NTB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF739OBK bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF980QXM 6784905 ENCODE Processing Pipeline d008bca9f779d0d2c3a544ab46b011fa https://www.encodeproject.org/files/ENCFF739OBK/@@download/ENCFF739OBK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF757ROU bigWig fold change over control ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW, ENCFF980QXM 1789526028 ENCODE Processing Pipeline 0ee79e70205d77e2988c31d8b95e77b1 https://www.encodeproject.org/files/ENCFF757ROU/@@download/ENCFF757ROU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF438AHF bed narrowPeak conservative idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF121NTB, ENCFF377LKC, ENCFF739OBK 123696 ENCODE Processing Pipeline 4110b79850179b95b31d38aa7db4712e https://www.encodeproject.org/files/ENCFF438AHF/@@download/ENCFF438AHF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF633KWB bigBed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF739OBK 12332660 ENCODE Processing Pipeline f4eab4b76eeb55c77e6ad67c6ee81533 https://www.encodeproject.org/files/ENCFF633KWB/@@download/ENCFF633KWB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF940WKB bigBed narrowPeak optimal idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF193YAN 441136 ENCODE Processing Pipeline 440daf9170266e2792b2c31fd579c75d https://www.encodeproject.org/files/ENCFF940WKB/@@download/ENCFF940WKB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF935EQK bigBed narrowPeak conservative idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF438AHF 283751 ENCODE Processing Pipeline 9bb1009440f5aa516a8d3dc35f96ef08 https://www.encodeproject.org/files/ENCFF935EQK/@@download/ENCFF935EQK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF193YAN bed narrowPeak optimal idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF121NTB, ENCFF377LKC, ENCFF739OBK 193664 ENCODE Processing Pipeline a67c8791173fbb24fb6a7a9bd69ebf8d https://www.encodeproject.org/files/ENCFF193YAN/@@download/ENCFF193YAN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF806UKI bigBed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF121NTB 12761851 ENCODE Processing Pipeline 7800cec6593bbc00da8e706818b26d21 https://www.encodeproject.org/files/ENCFF806UKI/@@download/ENCFF806UKI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF492ELP bigWig signal p-value ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF180DGV 1571967438 ENCODE Processing Pipeline 2daec9e6980b494ed8e5a47bd7fb6a07 https://www.encodeproject.org/files/ENCFF492ELP/@@download/ENCFF492ELP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF687TJK bigWig signal p-value ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF354ELR 1733572135 ENCODE Processing Pipeline 7d9e18cbff252e4b6232ce7e6af69f49 https://www.encodeproject.org/files/ENCFF687TJK/@@download/ENCFF687TJK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF928ARH bigWig signal p-value ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF180DGV, ENCFF354ELR 1939171949 ENCODE Processing Pipeline 302e5117df8667d1b673634d4271f8ef https://www.encodeproject.org/files/ENCFF928ARH/@@download/ENCFF928ARH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF439ACI bigWig fold change over control ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF180DGV 836005624 ENCODE Processing Pipeline dcd903c5fc9d2aa727b25f40db2afcb5 https://www.encodeproject.org/files/ENCFF439ACI/@@download/ENCFF439ACI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF539IQR bigWig fold change over control ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF354ELR 1194691074 ENCODE Processing Pipeline dd83eead0f8a5acdf963835ddc8e1fc5 https://www.encodeproject.org/files/ENCFF539IQR/@@download/ENCFF539IQR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF094ABD bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF354ELR 6574700 ENCODE Processing Pipeline 65520bacb53c7c71eb88035fe40ac2f4 https://www.encodeproject.org/files/ENCFF094ABD/@@download/ENCFF094ABD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF134PWC bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF180DGV 6714510 ENCODE Processing Pipeline dc04d601e1c6aedd02a2fbb37954804e https://www.encodeproject.org/files/ENCFF134PWC/@@download/ENCFF134PWC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF283MNG bed narrowPeak optimal idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF094ABD, ENCFF134PWC, ENCFF186BRO, ENCFF419RSJ 193485 ENCODE Processing Pipeline 945422171ef459e0fc87ab580a2cfda8 https://www.encodeproject.org/files/ENCFF283MNG/@@download/ENCFF283MNG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF308TCO bigWig fold change over control ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF180DGV, ENCFF354ELR 1743188725 ENCODE Processing Pipeline 7402645d8875a0dcdc9caa65aae38bdf https://www.encodeproject.org/files/ENCFF308TCO/@@download/ENCFF308TCO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF563LEG bigBed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF094ABD 13364392 ENCODE Processing Pipeline 9dd64213254ab930f7e61f036c74f324 https://www.encodeproject.org/files/ENCFF563LEG/@@download/ENCFF563LEG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF865MYN bigBed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF134PWC 12256095 ENCODE Processing Pipeline 174c7c0f0424f94bbe6002fb9bb3863d https://www.encodeproject.org/files/ENCFF865MYN/@@download/ENCFF865MYN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF150LTG bigBed narrowPeak conservative idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF950MBW 284961 ENCODE Processing Pipeline 8adca3d57097cb72e1e3c4d10a6c25a5 https://www.encodeproject.org/files/ENCFF150LTG/@@download/ENCFF150LTG.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF186BRO bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF180DGV, ENCFF354ELR 7182696 ENCODE Processing Pipeline 428c60a12efe3d05501553cc8b62834a https://www.encodeproject.org/files/ENCFF186BRO/@@download/ENCFF186BRO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF768PCN bigBed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF186BRO 12725645 ENCODE Processing Pipeline 135f6e5e63d1f646073a8b837ac55bd2 https://www.encodeproject.org/files/ENCFF768PCN/@@download/ENCFF768PCN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF950MBW bed narrowPeak conservative idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF094ABD, ENCFF134PWC, ENCFF186BRO, ENCFF419RSJ 124955 ENCODE Processing Pipeline f96a446ebd345becab7dd0d44d4fb040 https://www.encodeproject.org/files/ENCFF950MBW/@@download/ENCFF950MBW.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF507RMK bigBed narrowPeak optimal idr thresholded peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF283MNG 439815 ENCODE Processing Pipeline 2a5a176c6ac2adea1a11d22b391c1c23 https://www.encodeproject.org/files/ENCFF507RMK/@@download/ENCFF507RMK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000WIC bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WIL 871137269 Michael Snyder, Stanford 2e40210775721688cad9a7bdf496ff21 https://www.encodeproject.org/files/ENCFF000WIC/@@download/ENCFF000WIC.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WID bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WIM 867598084 Michael Snyder, Stanford 8928590d5106d3011ed66d1e017aeaea https://www.encodeproject.org/files/ENCFF000WID/@@download/ENCFF000WID.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIE bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WIO 898748409 Michael Snyder, Stanford 194ad6fb43c1d5e70213c8ab976d1657 https://www.encodeproject.org/files/ENCFF000WIE/@@download/ENCFF000WIE.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIF bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WIW 479790334 Michael Snyder, Stanford ae1876f3d5dc2035d64c6bda8513d818 https://www.encodeproject.org/files/ENCFF000WIF/@@download/ENCFF000WIF.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIG bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 5 ENCFF000WJB 555873910 Michael Snyder, Stanford af6848822bcf6665639d2563639bd399 https://www.encodeproject.org/files/ENCFF000WIG/@@download/ENCFF000WIG.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIH bigBed narrowPeak peaks ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VFY 766911 Michael Snyder, Stanford 148507fd7e483eef91ed0b46ca8cdd2a https://www.encodeproject.org/files/ENCFF000WIH/@@download/ENCFF000WIH.bigBed hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WII bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 6 ENCFF000WJC 548370469 Michael Snyder, Stanford 196b6840c5325f69fb62b3b4717545cf https://www.encodeproject.org/files/ENCFF000WII/@@download/ENCFF000WII.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIL fastq reads ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 1 34 single-ended 693061645 Michael Snyder, Stanford 6d71f4be9cff78bc0dd9e0df365d74fd https://www.encodeproject.org/files/ENCFF000WIL/@@download/ENCFF000WIL.fastq.gz Illumina Genome Analyzer /files/ENCFF000WHY/ released inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIM fastq reads ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 1 34 single-ended 683744411 Michael Snyder, Stanford 146c3566d7a70d8d47997289ad584407 https://www.encodeproject.org/files/ENCFF000WIM/@@download/ENCFF000WIM.fastq.gz Illumina Genome Analyzer /files/ENCFF000WHZ/ released inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIO fastq reads ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 1 34 single-ended 702343571 Michael Snyder, Stanford dcd88af9c44ee71c329fcd95546aa37d https://www.encodeproject.org/files/ENCFF000WIO/@@download/ENCFF000WIO.fastq.gz Illumina Genome Analyzer released mixed read lengths biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WIP bigWig signal ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 589944327 Michael Snyder, Stanford e07cd9ed3770a0161bc81ee2bf3a0fd0 https://www.encodeproject.org/files/ENCFF000WIP/@@download/ENCFF000WIP.bigWig hg19 released mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000WIW fastq reads ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 1 28 single-ended 358449977 Michael Snyder, Stanford dc6c29a3adcb0ecf05c7dc06801919d9 https://www.encodeproject.org/files/ENCFF000WIW/@@download/ENCFF000WIW.fastq.gz Illumina Genome Analyzer released mixed read lengths biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WJB fastq reads ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 5 1 28 single-ended 420764508 Michael Snyder, Stanford 4b2104789fba955bb62a17dfc80fa226 https://www.encodeproject.org/files/ENCFF000WJB/@@download/ENCFF000WJB.fastq.gz Illumina Genome Analyzer released mixed read lengths biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF000WJC fastq reads ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 6 1 28 single-ended 416388892 Michael Snyder, Stanford 6acb7caf14774559d205e12084642cbe https://www.encodeproject.org/files/ENCFF000WJC/@@download/ENCFF000WJC.fastq.gz Illumina Genome Analyzer released mixed read lengths biological replicates with identical biosample missing controlled_by, insufficient read length ENCFF001VFY bed narrowPeak peaks ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 375279 Michael Snyder, Stanford a4772896ff1618c7513bb9edc3a2bb8d https://www.encodeproject.org/files/ENCFF001VFY/@@download/ENCFF001VFY.bed.gz hg19 released mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002CQA bed narrowPeak optimal idr thresholded peaks ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 459231 ENCODE Consortium Analysis Working Group 3e3edcca4591f6adc4da3f652692f702 https://www.encodeproject.org/files/ENCFF002CQA/@@download/ENCFF002CQA.bed.gz hg19 released mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length ENCFF610YAZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CQA 1241891 ENCODE Consortium c3fdb8e01f38f21b68c12a4fdbbdafcb https://www.encodeproject.org/files/ENCFF610YAZ/@@download/ENCFF610YAZ.bigBed hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WWH bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF000WWM 257018505 Peggy Farnham, USC 4b81ff342823ea8d730689764e69bcea https://www.encodeproject.org/files/ENCFF000WWH/@@download/ENCFF000WWH.bam hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF000WWL bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VHI 217623 Peggy Farnham, USC 10259827050ee62e74c57334dd480d78 https://www.encodeproject.org/files/ENCFF000WWL/@@download/ENCFF000WWL.bigBed hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF000WWM fastq reads ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 155452941 Peggy Farnham, USC be177dfb7216e28da4cbdef013e516d0 https://www.encodeproject.org/files/ENCFF000WWM/@@download/ENCFF000WWM.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released low read length, borderline replicate concordance, inconsistent control read length biological replicates with identical biosample extremely low read depth ENCFF000WWO fastq reads ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1180816025 Peggy Farnham, USC 9a78c149eae3147ef57c454f2bb37871 https://www.encodeproject.org/files/ENCFF000WWO/@@download/ENCFF000WWO.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released low read length, borderline replicate concordance, inconsistent control read length biological replicates with identical biosample extremely low read depth ENCFF000WWT bigWig signal ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 159477565 Peggy Farnham, USC e8865f4337e14c7ff91ab8e3849ed098 https://www.encodeproject.org/files/ENCFF000WWT/@@download/ENCFF000WWT.bigWig hg19 released low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample extremely low read depth ENCFF000WWV bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF000WWO, ENCFF000WWQ 682121197 Peggy Farnham, USC a1e578b1d40a9e72da826d43aaa0b059 https://www.encodeproject.org/files/ENCFF000WWV/@@download/ENCFF000WWV.bam hg19 archived low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF001VHI bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 51581 Peggy Farnham, USC 2d54ec8372c91172e03be0e279f83961 https://www.encodeproject.org/files/ENCFF001VHI/@@download/ENCFF001VHI.bed.gz hg19 archived low read length, borderline replicate concordance missing derived_from, biological replicates with identical biosample extremely low read depth ENCFF000WWQ fastq reads ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 303181326 Peggy Farnham, USC e9ab0bf60b102ababfc805f3a87790b3 https://www.encodeproject.org/files/ENCFF000WWQ/@@download/ENCFF000WWQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUW/ released low read length, borderline replicate concordance, inconsistent control read length biological replicates with identical biosample extremely low read depth ENCFF765ULA bam unfiltered alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000WWM, ENCFF643CGH 180980045 ENCODE Processing Pipeline 183633bbbb8f406061fd14709609b65b https://www.encodeproject.org/files/ENCFF765ULA/@@download/ENCFF765ULA.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF101DVO bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000WWM, ENCFF643CGH 111098465 ENCODE Processing Pipeline 66fd18016246bdb0e9f1e4667f857315 https://www.encodeproject.org/files/ENCFF101DVO/@@download/ENCFF101DVO.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF123NKL bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000WWM, ENCFF807MUK 111163742 ENCODE Processing Pipeline 78e26ba5b8cd081ffa77f9aa5e9392b3 https://www.encodeproject.org/files/ENCFF123NKL/@@download/ENCFF123NKL.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF222YJR bam unfiltered alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000WWM, ENCFF807MUK 180008943 ENCODE Processing Pipeline 95c952986d66f33e77e83174319bd510 https://www.encodeproject.org/files/ENCFF222YJR/@@download/ENCFF222YJR.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF569NYW bam unfiltered alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000WWO, ENCFF000WWQ, ENCFF807MUK 1697140557 ENCODE Processing Pipeline c06453aa002b7de2865da96c2fa4b46c https://www.encodeproject.org/files/ENCFF569NYW/@@download/ENCFF569NYW.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF124AWF bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000WWO, ENCFF000WWQ, ENCFF807MUK 1198915719 ENCODE Processing Pipeline 9701e0e67c7fb73d9039d634b129114f https://www.encodeproject.org/files/ENCFF124AWF/@@download/ENCFF124AWF.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF712PHN bam unfiltered alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000WWO, ENCFF000WWQ, ENCFF643CGH 1706520279 ENCODE Processing Pipeline d6ac6f8d79b1516b96428ff727ace0f5 https://www.encodeproject.org/files/ENCFF712PHN/@@download/ENCFF712PHN.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF175PHI bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000WWO, ENCFF000WWQ, ENCFF643CGH 1198589863 ENCODE Processing Pipeline dddd6a88fd57967b9a77c29a742d5909 https://www.encodeproject.org/files/ENCFF175PHI/@@download/ENCFF175PHI.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF775VFI bigWig signal p-value ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF123NKL, ENCFF509ANO 336686075 ENCODE Processing Pipeline 6a6dfaba5a42590af98d6553b0b5dec1 https://www.encodeproject.org/files/ENCFF775VFI/@@download/ENCFF775VFI.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF543RQV bigWig signal p-value ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF124AWF, ENCFF509ANO 670484212 ENCODE Processing Pipeline ff83bd70ee38485555854a8b197f1416 https://www.encodeproject.org/files/ENCFF543RQV/@@download/ENCFF543RQV.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF866AYA bigWig signal p-value ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF123NKL, ENCFF124AWF, ENCFF509ANO 694139951 ENCODE Processing Pipeline 6d8f89a961fcd4048f3d6439ce3f099e https://www.encodeproject.org/files/ENCFF866AYA/@@download/ENCFF866AYA.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF940VLV bigWig fold change over control ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF123NKL, ENCFF124AWF, ENCFF509ANO 696942225 ENCODE Processing Pipeline eab5f9ba6f262a0ff774809a7282a3d3 https://www.encodeproject.org/files/ENCFF940VLV/@@download/ENCFF940VLV.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF784FBR bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF123NKL, ENCFF509ANO 1025365 ENCODE Processing Pipeline 9c425ec8d5a70be9f50709f48982add5 https://www.encodeproject.org/files/ENCFF784FBR/@@download/ENCFF784FBR.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF374BCB bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF124AWF, ENCFF509ANO 6517166 ENCODE Processing Pipeline 2b7f85d2429f2bcae158980453ddfda3 https://www.encodeproject.org/files/ENCFF374BCB/@@download/ENCFF374BCB.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF880KQX bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF374BCB 12733035 ENCODE Processing Pipeline f31c540f60ad6f2d646864a1b8e39b63 https://www.encodeproject.org/files/ENCFF880KQX/@@download/ENCFF880KQX.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF234PFK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF591VGP 121640 ENCODE Processing Pipeline 027ff326514370389ce0c4fc2475ed63 https://www.encodeproject.org/files/ENCFF234PFK/@@download/ENCFF234PFK.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF919LOI bigWig signal p-value ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF101DVO, ENCFF559ZZZ 381131488 ENCODE Processing Pipeline 2b460932a4e415dc81bab9ca83ee0a84 https://www.encodeproject.org/files/ENCFF919LOI/@@download/ENCFF919LOI.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF431SLJ bigWig signal p-value ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF175PHI, ENCFF559ZZZ 635443652 ENCODE Processing Pipeline 031525a34d65e993b31c9e504304c3f6 https://www.encodeproject.org/files/ENCFF431SLJ/@@download/ENCFF431SLJ.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF181CKC bigWig signal p-value ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF101DVO, ENCFF175PHI, ENCFF559ZZZ 665818329 ENCODE Processing Pipeline 45974058235bc9ffdcd5646d55a74b63 https://www.encodeproject.org/files/ENCFF181CKC/@@download/ENCFF181CKC.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF160MNX bigWig fold change over control ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF175PHI, ENCFF559ZZZ 626712911 ENCODE Processing Pipeline 0d5455b6588a3a09f7984202c486bb93 https://www.encodeproject.org/files/ENCFF160MNX/@@download/ENCFF160MNX.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF040IXF bigWig fold change over control ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF101DVO, ENCFF175PHI, ENCFF559ZZZ 654950972 ENCODE Processing Pipeline df50230066f2ba615b207ce7a8437e13 https://www.encodeproject.org/files/ENCFF040IXF/@@download/ENCFF040IXF.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF668STW bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF101DVO, ENCFF559ZZZ 996671 ENCODE Processing Pipeline 74b7a7a5209e1e376240e82b8d23b19c https://www.encodeproject.org/files/ENCFF668STW/@@download/ENCFF668STW.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF441WKB bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF175PHI, ENCFF559ZZZ 6500963 ENCODE Processing Pipeline 97d550bdf9e657ae436021152dd55934 https://www.encodeproject.org/files/ENCFF441WKB/@@download/ENCFF441WKB.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF518JFN bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF101DVO, ENCFF175PHI, ENCFF559ZZZ 6723313 ENCODE Processing Pipeline 6e541444598cdb9d6e3fe893729fb92d https://www.encodeproject.org/files/ENCFF518JFN/@@download/ENCFF518JFN.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF906NDR bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF668STW 2211882 ENCODE Processing Pipeline c4bf91e9380edce81c5b24ac0c2ee8ef https://www.encodeproject.org/files/ENCFF906NDR/@@download/ENCFF906NDR.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF902ZOJ bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF441WKB 12755383 ENCODE Processing Pipeline 844bcd3f37183f07ae2a337e15752742 https://www.encodeproject.org/files/ENCFF902ZOJ/@@download/ENCFF902ZOJ.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF300GIY bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF518JFN 12856655 ENCODE Processing Pipeline dc151086dc761c7a4a9574be2033f21e https://www.encodeproject.org/files/ENCFF300GIY/@@download/ENCFF300GIY.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF719RMA bigWig fold change over control ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF123NKL, ENCFF509ANO 96361668 ENCODE Processing Pipeline a51e8c2d7b148af8c8ba8a697a71a21e https://www.encodeproject.org/files/ENCFF719RMA/@@download/ENCFF719RMA.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF015DMU bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF123NKL, ENCFF124AWF, ENCFF509ANO 6746496 ENCODE Processing Pipeline 7fd2ac5540b57cb9d10e964981f2a811 https://www.encodeproject.org/files/ENCFF015DMU/@@download/ENCFF015DMU.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF153XLG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF365JMJ 148851 ENCODE Processing Pipeline 79fc03e9bc3e15f0acfad54710f0e3b4 https://www.encodeproject.org/files/ENCFF153XLG/@@download/ENCFF153XLG.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF060FUO bigWig fold change over control ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF101DVO, ENCFF559ZZZ 96278221 ENCODE Processing Pipeline a9d9d8177854a4f95c5ec22fba12de3d https://www.encodeproject.org/files/ENCFF060FUO/@@download/ENCFF060FUO.bigWig GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF239NXT bed narrowPeak conservative idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF441WKB, ENCFF518JFN, ENCFF668STW 18145 ENCODE Processing Pipeline 68e69881750b97ad38a2b1859e0dea78 https://www.encodeproject.org/files/ENCFF239NXT/@@download/ENCFF239NXT.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF192YEK bigBed narrowPeak conservative idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF239NXT 124354 ENCODE Processing Pipeline 90b25ac7555e4559f0c0e47b794b9330 https://www.encodeproject.org/files/ENCFF192YEK/@@download/ENCFF192YEK.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF943NOT bed narrowPeak optimal idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF441WKB, ENCFF518JFN, ENCFF668STW 25123 ENCODE Processing Pipeline 9aeebb6c94faeda4fc0a3408ec829fa1 https://www.encodeproject.org/files/ENCFF943NOT/@@download/ENCFF943NOT.bed.gz GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF655EHG bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF943NOT 155036 ENCODE Processing Pipeline 2af13b389537b32ac4fa5519a3f7c8e8 https://www.encodeproject.org/files/ENCFF655EHG/@@download/ENCFF655EHG.bigBed GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF771OJS bigWig fold change over control ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF124AWF, ENCFF509ANO 645855073 ENCODE Processing Pipeline 8020b765f4cc6b4242df8e09aa3f96ae https://www.encodeproject.org/files/ENCFF771OJS/@@download/ENCFF771OJS.bigWig hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF021QCX bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF015DMU 12835699 ENCODE Processing Pipeline bd9c125510d3f7bcccfc058e8113d796 https://www.encodeproject.org/files/ENCFF021QCX/@@download/ENCFF021QCX.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF064AXY bigBed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF784FBR 2257555 ENCODE Processing Pipeline fac2eb9a1e746749fba7867e93a9a175 https://www.encodeproject.org/files/ENCFF064AXY/@@download/ENCFF064AXY.bigBed hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF365JMJ bed narrowPeak optimal idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF015DMU, ENCFF374BCB, ENCFF784FBR 26071 ENCODE Processing Pipeline f96107d880775c7908258193d11e8e3e https://www.encodeproject.org/files/ENCFF365JMJ/@@download/ENCFF365JMJ.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF591VGP bed narrowPeak conservative idr thresholded peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF015DMU, ENCFF374BCB, ENCFF784FBR 17571 ENCODE Processing Pipeline 145b7e38e770398c67022b55d8c69ebe https://www.encodeproject.org/files/ENCFF591VGP/@@download/ENCFF591VGP.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF000QKT bigBed broadPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UMH 301144 Richard Myers, HAIB f9c0c691ca1929e1b70b49df49f57058 https://www.encodeproject.org/files/ENCFF000QKT/@@download/ENCFF000QKT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QKU bigBed broadPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UMI 1079521 Richard Myers, HAIB 2d16d19815f72cd9ea86359999de984b https://www.encodeproject.org/files/ENCFF000QKU/@@download/ENCFF000QKU.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QKV bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QLC 670606460 Richard Myers, HAIB 1b1bd63f5fc1052f9e1b4b19050bb6d3 https://www.encodeproject.org/files/ENCFF000QKV/@@download/ENCFF000QKV.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QKW bigWig raw signal ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 1 9308814 Richard Myers, HAIB e8178129a0d723472ae065af4c254b3d https://www.encodeproject.org/files/ENCFF000QKW/@@download/ENCFF000QKW.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QKX bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QLG 1070912704 Richard Myers, HAIB 5930d9f7f2c09d87f602a9e5145fed98 https://www.encodeproject.org/files/ENCFF000QKX/@@download/ENCFF000QKX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QKY bigWig raw signal ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 1 50131825 Richard Myers, HAIB e9c027b21778c68cf5a2789013bf6af5 https://www.encodeproject.org/files/ENCFF000QKY/@@download/ENCFF000QKY.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000QLC fastq reads ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 618832603 Richard Myers, HAIB 1d9bf5b6afbe57efc07f5808ba038f82 https://www.encodeproject.org/files/ENCFF000QLC/@@download/ENCFF000QLC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QLG fastq reads ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1112162617 Richard Myers, HAIB 279b1cc74435f5272963dad002aa47bf https://www.encodeproject.org/files/ENCFF000QLG/@@download/ENCFF000QLG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001UMH bed broadPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 1 152029 Richard Myers, HAIB a638098859d8abb82f51742a716f29d7 https://www.encodeproject.org/files/ENCFF001UMH/@@download/ENCFF001UMH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF001UMI bed broadPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 1 603742 Richard Myers, HAIB d3ee2bb1e8d1e70d5ce927e6acd95d20 https://www.encodeproject.org/files/ENCFF001UMI/@@download/ENCFF001UMI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF002CMZ bed narrowPeak optimal idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 441449 ENCODE Consortium Analysis Working Group f57e8302a733b1d28d1d8fc097de34cd https://www.encodeproject.org/files/ENCFF002CMZ/@@download/ENCFF002CMZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF378XCF bigBed narrowPeak optimal idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CMZ 1104926 ENCODE Consortium 7125335bb7ee2dcb1332322a615111e1 https://www.encodeproject.org/files/ENCFF378XCF/@@download/ENCFF378XCF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF927KAH bam unfiltered alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QLC, ENCFF807MUK 820027638 ENCODE Processing Pipeline 212c1ec8961049cb70e90b9c3f12fe3b https://www.encodeproject.org/files/ENCFF927KAH/@@download/ENCFF927KAH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF859KGS bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QLC, ENCFF807MUK 438697653 ENCODE Processing Pipeline 54d59877e85df1a35f7d0ec4cf6f02a9 https://www.encodeproject.org/files/ENCFF859KGS/@@download/ENCFF859KGS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF642RRS bam unfiltered alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QLG, ENCFF807MUK 1379183545 ENCODE Processing Pipeline c8e2a66cc0e811602b8735d340b65eb0 https://www.encodeproject.org/files/ENCFF642RRS/@@download/ENCFF642RRS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF920CCJ bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QLG, ENCFF807MUK 691782077 ENCODE Processing Pipeline e311fa3ed5ebfe8934071940a176d24a https://www.encodeproject.org/files/ENCFF920CCJ/@@download/ENCFF920CCJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF919LAP bam unfiltered alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QLC, ENCFF643CGH 821713349 ENCODE Processing Pipeline efa894d63021eb9bdf3046540d6dab75 https://www.encodeproject.org/files/ENCFF919LAP/@@download/ENCFF919LAP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF784SCN bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QLC, ENCFF643CGH 438447819 ENCODE Processing Pipeline b5973d93299d0c5813c759b060824952 https://www.encodeproject.org/files/ENCFF784SCN/@@download/ENCFF784SCN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF203KTA bam unfiltered alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QLG, ENCFF643CGH 1380732916 ENCODE Processing Pipeline ce22ff256f8ea55d7fa2c44d2ea6df3a https://www.encodeproject.org/files/ENCFF203KTA/@@download/ENCFF203KTA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF778PDI bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QLG, ENCFF643CGH 691292650 ENCODE Processing Pipeline e8964b8c48ed513a5bedcad1b6f8772c https://www.encodeproject.org/files/ENCFF778PDI/@@download/ENCFF778PDI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF123NAN bigBed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF101JWH 12717810 ENCODE Processing Pipeline 387037b87cf9bcbaa9a995769f00d575 https://www.encodeproject.org/files/ENCFF123NAN/@@download/ENCFF123NAN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF345YFV bed narrowPeak conservative idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF101JWH, ENCFF412YTK, ENCFF644MVI 375088 ENCODE Processing Pipeline b39d11d380e03f50421cf04de59abee9 https://www.encodeproject.org/files/ENCFF345YFV/@@download/ENCFF345YFV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF415GBQ bigWig signal p-value ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF750MIM, ENCFF859KGS, ENCFF920CCJ 191860357 ENCODE Processing Pipeline 268b457bc13712540fbc3c3b3c64b4a6 https://www.encodeproject.org/files/ENCFF415GBQ/@@download/ENCFF415GBQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF457PSO bigWig fold change over control ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF750MIM, ENCFF859KGS, ENCFF920CCJ 376292347 ENCODE Processing Pipeline 34be4c636498f0fa27eae120d0ce3e7e https://www.encodeproject.org/files/ENCFF457PSO/@@download/ENCFF457PSO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF219ISV bigBed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF412YTK 9638875 ENCODE Processing Pipeline d486980ffc6e414df452a0ac3d8567c4 https://www.encodeproject.org/files/ENCFF219ISV/@@download/ENCFF219ISV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF412YTK bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF859KGS 4043931 ENCODE Processing Pipeline d6b3c6ecd2f902f4c5f59525622b62da https://www.encodeproject.org/files/ENCFF412YTK/@@download/ENCFF412YTK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF612PZL bigBed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF644MVI 12501354 ENCODE Processing Pipeline 1c3d3fc4c736f28ebc5e41cf7594a9de https://www.encodeproject.org/files/ENCFF612PZL/@@download/ENCFF612PZL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF706ISJ bed narrowPeak optimal idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF101JWH, ENCFF412YTK, ENCFF644MVI 533464 ENCODE Processing Pipeline ee9d4887416c08e558ca9ce0f11d8c69 https://www.encodeproject.org/files/ENCFF706ISJ/@@download/ENCFF706ISJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF216ASX bigWig signal p-value ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF920CCJ 218870299 ENCODE Processing Pipeline 03792c06624aa35dd2c07ff57d1b656d https://www.encodeproject.org/files/ENCFF216ASX/@@download/ENCFF216ASX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF101JWH bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF750MIM, ENCFF859KGS, ENCFF920CCJ 5825370 ENCODE Processing Pipeline b2c53b5b3a7acccd8ff47083c3ffb2dc https://www.encodeproject.org/files/ENCFF101JWH/@@download/ENCFF101JWH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF783TOK bigBed narrowPeak optimal idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF706ISJ 1161542 ENCODE Processing Pipeline ac6d014e8b88825b6202eb63d32e50ff https://www.encodeproject.org/files/ENCFF783TOK/@@download/ENCFF783TOK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF627GEZ bigWig signal p-value ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF859KGS 208211355 ENCODE Processing Pipeline ef79f9719d8d798ef761346f9f5e5466 https://www.encodeproject.org/files/ENCFF627GEZ/@@download/ENCFF627GEZ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF436RWF bigWig fold change over control ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF859KGS 186818731 ENCODE Processing Pipeline 2af9ae38bc28d77ac1fc9f35cb25df42 https://www.encodeproject.org/files/ENCFF436RWF/@@download/ENCFF436RWF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF722WMS bigWig fold change over control ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF920CCJ 230668529 ENCODE Processing Pipeline 8a19325662972c5362a70448996455d0 https://www.encodeproject.org/files/ENCFF722WMS/@@download/ENCFF722WMS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF644MVI bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF920CCJ 5401132 ENCODE Processing Pipeline 2d9ed99c4264b18ec0eb5cc5200d7a3d https://www.encodeproject.org/files/ENCFF644MVI/@@download/ENCFF644MVI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF695ASQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF345YFV 883070 ENCODE Processing Pipeline 152f3419a427bc33782d91c240697afe https://www.encodeproject.org/files/ENCFF695ASQ/@@download/ENCFF695ASQ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF004TYN bigWig signal p-value ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF772PJM, ENCFF784SCN 211103483 ENCODE Processing Pipeline 941408bfef87467305baa6e154083e55 https://www.encodeproject.org/files/ENCFF004TYN/@@download/ENCFF004TYN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF896ACB bigWig signal p-value ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF772PJM, ENCFF778PDI 214779289 ENCODE Processing Pipeline 2323a9782c82579b6a8908737aa9efbf https://www.encodeproject.org/files/ENCFF896ACB/@@download/ENCFF896ACB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF921NME bigWig signal p-value ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF772PJM, ENCFF778PDI, ENCFF784SCN 191595483 ENCODE Processing Pipeline 29f94bb349675e9fd63a289170531f1f https://www.encodeproject.org/files/ENCFF921NME/@@download/ENCFF921NME.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF134GDG bigWig fold change over control ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF772PJM, ENCFF784SCN 190920155 ENCODE Processing Pipeline 51ff96a089084f231bc8ebacf0fab703 https://www.encodeproject.org/files/ENCFF134GDG/@@download/ENCFF134GDG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF108DKO bigWig fold change over control ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF772PJM, ENCFF778PDI 230750456 ENCODE Processing Pipeline 927fddbdb7a9c6ef8fef9803455f8045 https://www.encodeproject.org/files/ENCFF108DKO/@@download/ENCFF108DKO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF183DNX bigBed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF348XKJ 9608764 ENCODE Processing Pipeline 79968a4663d31dce1323471c3ca769d4 https://www.encodeproject.org/files/ENCFF183DNX/@@download/ENCFF183DNX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF348XKJ bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF772PJM, ENCFF784SCN 4015381 ENCODE Processing Pipeline fff268e3ec4aad8fb0d9f0616aa0cbd9 https://www.encodeproject.org/files/ENCFF348XKJ/@@download/ENCFF348XKJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF193NOO bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF772PJM, ENCFF778PDI 5345806 ENCODE Processing Pipeline 394514c5b53808ab5532cbfc0e2931ed https://www.encodeproject.org/files/ENCFF193NOO/@@download/ENCFF193NOO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF482PBU bed narrowPeak conservative idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF193NOO, ENCFF348XKJ, ENCFF419RSJ, ENCFF586QIP 373605 ENCODE Processing Pipeline bf7a3dd26551f2231aa18a2735e7f1dd https://www.encodeproject.org/files/ENCFF482PBU/@@download/ENCFF482PBU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF961EMF bigWig fold change over control ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF772PJM, ENCFF778PDI, ENCFF784SCN 376814782 ENCODE Processing Pipeline 2f056394d8b0f4d31805e0dc85580f5e https://www.encodeproject.org/files/ENCFF961EMF/@@download/ENCFF961EMF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF245LRG bed narrowPeak optimal idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF193NOO, ENCFF348XKJ, ENCFF419RSJ, ENCFF586QIP 530654 ENCODE Processing Pipeline 2c00a20ed88a81bb259b21e8faf4d309 https://www.encodeproject.org/files/ENCFF245LRG/@@download/ENCFF245LRG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF287KON bigBed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF193NOO 12449569 ENCODE Processing Pipeline 013531a5fc8117c93577be073b180060 https://www.encodeproject.org/files/ENCFF287KON/@@download/ENCFF287KON.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF093HJF bigBed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF586QIP 12715525 ENCODE Processing Pipeline f1bc54b9aead60bb589015156ee3f59c https://www.encodeproject.org/files/ENCFF093HJF/@@download/ENCFF093HJF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF586QIP bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF772PJM, ENCFF778PDI, ENCFF784SCN 5817996 ENCODE Processing Pipeline 43bad6f80050c426813c06b0ebe8a806 https://www.encodeproject.org/files/ENCFF586QIP/@@download/ENCFF586QIP.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF666EAQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF245LRG 1155141 ENCODE Processing Pipeline cf041437baa3e22fc8c155245c51f62f https://www.encodeproject.org/files/ENCFF666EAQ/@@download/ENCFF666EAQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF218PTA bigBed narrowPeak conservative idr thresholded peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF482PBU 881864 ENCODE Processing Pipeline 75063389716c2e2fd51efd4abcc8332b https://www.encodeproject.org/files/ENCFF218PTA/@@download/ENCFF218PTA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000WXK bam alignments ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WXS 392574798 Peggy Farnham, USC c1dae883477e6bb5a074937aace75490 https://www.encodeproject.org/files/ENCFF000WXK/@@download/ENCFF000WXK.bam hg19 released low read length biological replicates with identical biosample ENCFF000WXL bigBed narrowPeak peaks ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHL 181921 Peggy Farnham, USC 10d112a37f0d84cec6b9c40cfe43361b https://www.encodeproject.org/files/ENCFF000WXL/@@download/ENCFF000WXL.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000WXM bigWig signal ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 432702028 Peggy Farnham, USC c8e4e3b7f78bdc4bce512db527b0c0d1 https://www.encodeproject.org/files/ENCFF000WXM/@@download/ENCFF000WXM.bigWig hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF000WXN bam alignments ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WXW 840373132 Peggy Farnham, USC af04df68d1a39212cadbae93468c4911 https://www.encodeproject.org/files/ENCFF000WXN/@@download/ENCFF000WXN.bam hg19 released low read length biological replicates with identical biosample ENCFF000WXS fastq reads ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 741159262 Peggy Farnham, USC bec56da23522e1115e299c6ad9b8c62c https://www.encodeproject.org/files/ENCFF000WXS/@@download/ENCFF000WXS.fastq.gz Illumina Genome Analyzer /files/ENCFF000WXY/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000WXW fastq reads ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 2028742606 Peggy Farnham, USC 69d7bcf767c56afbedde515714572725 https://www.encodeproject.org/files/ENCFF000WXW/@@download/ENCFF000WXW.fastq.gz Illumina Genome Analyzer /files/ENCFF000WXY/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VHL bed narrowPeak peaks ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 53377 Peggy Farnham, USC eb01bc868a6fcd3e08d432c290866067 https://www.encodeproject.org/files/ENCFF001VHL/@@download/ENCFF001VHL.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CRM bed narrowPeak optimal idr thresholded peaks ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 38731 ENCODE Consortium Analysis Working Group 919096356b9185293cad6166f6b760a1 https://www.encodeproject.org/files/ENCFF002CRM/@@download/ENCFF002CRM.bed.gz hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF680RWH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRM 177971 ENCODE Consortium 4740a48dd466bebea343d00349cc2cf3 https://www.encodeproject.org/files/ENCFF680RWH/@@download/ENCFF680RWH.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000OWU bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OXD 1414523695 Richard Myers, HAIB bd4ed318a05df207b342464185fdefa1 https://www.encodeproject.org/files/ENCFF000OWU/@@download/ENCFF000OWU.bam hg19 archived biological replicates with identical biosample ENCFF000OWV bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OXG 1706200394 Richard Myers, HAIB 0c1ed93078348e4c4cf43b617fea050b https://www.encodeproject.org/files/ENCFF000OWV/@@download/ENCFF000OWV.bam hg19 archived biological replicates with identical biosample ENCFF000OWW bigBed broadPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDG 1567483 Richard Myers, HAIB 37b562d4f717a707ce5a36d4ba92e928 https://www.encodeproject.org/files/ENCFF000OWW/@@download/ENCFF000OWW.bigBed hg19 archived biological replicates with identical biosample ENCFF000OWX bigBed broadPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDH 1609320 Richard Myers, HAIB 104f0a8b99be21a69648400369858c61 https://www.encodeproject.org/files/ENCFF000OWX/@@download/ENCFF000OWX.bigBed hg19 archived biological replicates with identical biosample ENCFF000OWY bigWig raw signal ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 229230140 Richard Myers, HAIB b58c57ca95f992e52f2bbb8e91026cf9 https://www.encodeproject.org/files/ENCFF000OWY/@@download/ENCFF000OWY.bigWig hg19 archived biological replicates with identical biosample, missing derived_from ENCFF000OXA bigWig raw signal ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 195342328 Richard Myers, HAIB d8c5a2fb03186806d90728986e07b12c https://www.encodeproject.org/files/ENCFF000OXA/@@download/ENCFF000OXA.bigWig hg19 archived missing derived_from, biological replicates with identical biosample ENCFF000OXD fastq reads ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1483400497 Richard Myers, HAIB e5ded8d06129e09aee30fc0f47832484 https://www.encodeproject.org/files/ENCFF000OXD/@@download/ENCFF000OXD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OXQ/ released biological replicates with identical biosample ENCFF000OXG fastq reads ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1786999237 Richard Myers, HAIB 303c85408434fde009bfbce24716263c https://www.encodeproject.org/files/ENCFF000OXG/@@download/ENCFF000OXG.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OXP/ released biological replicates with identical biosample ENCFF001UDG bed broadPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 1 864456 Richard Myers, HAIB 09514841a227917d51412b02a0f67f82 https://www.encodeproject.org/files/ENCFF001UDG/@@download/ENCFF001UDG.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample ENCFF001UDH bed broadPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 1 891458 Richard Myers, HAIB 9b164fd77c97aeeebddd239551d61005 https://www.encodeproject.org/files/ENCFF001UDH/@@download/ENCFF001UDH.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample ENCFF536VAX bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OXD, ENCFF807MUK 1155622382 ENCODE Processing Pipeline 9ba6810302c6c86160d3ea953ef3a360 https://www.encodeproject.org/files/ENCFF536VAX/@@download/ENCFF536VAX.bam hg19 released biological replicates with identical biosample ENCFF402LCR bam unfiltered alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OXD, ENCFF643CGH 1509322002 ENCODE Processing Pipeline 6f11498b8a2cf81a1515c4c33d010e93 https://www.encodeproject.org/files/ENCFF402LCR/@@download/ENCFF402LCR.bam GRCh38 released biological replicates with identical biosample ENCFF709AFO bam unfiltered alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OXG, ENCFF643CGH 1829547199 ENCODE Processing Pipeline ff5ccd7be9a8695967288b0e583826d4 https://www.encodeproject.org/files/ENCFF709AFO/@@download/ENCFF709AFO.bam GRCh38 released biological replicates with identical biosample ENCFF949NKN bam unfiltered alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OXD, ENCFF807MUK 1507576416 ENCODE Processing Pipeline 75a7ff2bea3a78a5eef01170ad2ba658 https://www.encodeproject.org/files/ENCFF949NKN/@@download/ENCFF949NKN.bam hg19 released biological replicates with identical biosample ENCFF184YRD bam unfiltered alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OXG, ENCFF807MUK 1827105298 ENCODE Processing Pipeline 950e64b4009e1b7844aa4c16ab50f512 https://www.encodeproject.org/files/ENCFF184YRD/@@download/ENCFF184YRD.bam hg19 released biological replicates with identical biosample ENCFF319TCF bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OXD, ENCFF643CGH 1155405653 ENCODE Processing Pipeline 1ffaf62e02d79070e7341d1113e0bf2a https://www.encodeproject.org/files/ENCFF319TCF/@@download/ENCFF319TCF.bam GRCh38 released biological replicates with identical biosample ENCFF712GSG bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OXG, ENCFF807MUK 1405841745 ENCODE Processing Pipeline 5b2536dde1857ec292a54984f7d20184 https://www.encodeproject.org/files/ENCFF712GSG/@@download/ENCFF712GSG.bam hg19 released biological replicates with identical biosample ENCFF372IRO bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OXG, ENCFF643CGH 1405544549 ENCODE Processing Pipeline 1eaa3b39bb0e72f314493ac0a9e0eca4 https://www.encodeproject.org/files/ENCFF372IRO/@@download/ENCFF372IRO.bam GRCh38 released biological replicates with identical biosample ENCFF187WWV bigWig fold change over control ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 575047536 ENCODE Processing Pipeline 058dbf7b00e60403f86f4a0ad3d9fb25 https://www.encodeproject.org/files/ENCFF187WWV/@@download/ENCFF187WWV.bigWig hg19 released biological replicates with identical biosample ENCFF936MWV bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 6950213 ENCODE Processing Pipeline 6321b3dd7930582c5180a6ed426c46fe https://www.encodeproject.org/files/ENCFF936MWV/@@download/ENCFF936MWV.bed.gz hg19 released biological replicates with identical biosample ENCFF794EOZ bigBed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF666HPI 13258947 ENCODE Processing Pipeline 00e29cab9eb1bf899d7381d00350ca27 https://www.encodeproject.org/files/ENCFF794EOZ/@@download/ENCFF794EOZ.bigBed hg19 released biological replicates with identical biosample ENCFF526ROQ bigBed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF813QDL 13301962 ENCODE Processing Pipeline 7b40865d01bd98769d0423e44a0d1874 https://www.encodeproject.org/files/ENCFF526ROQ/@@download/ENCFF526ROQ.bigBed hg19 released biological replicates with identical biosample ENCFF653EXO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF411LEJ 1353779 ENCODE Processing Pipeline 593458668dcdb32ca38370179b7f8443 https://www.encodeproject.org/files/ENCFF653EXO/@@download/ENCFF653EXO.bigBed hg19 released biological replicates with identical biosample ENCFF885AHU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF450AEF 1890537 ENCODE Processing Pipeline eacd27b3b19fad49e64e043d5009b3e2 https://www.encodeproject.org/files/ENCFF885AHU/@@download/ENCFF885AHU.bigBed hg19 released biological replicates with identical biosample ENCFF594WLP bigWig signal p-value ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 1021626420 ENCODE Processing Pipeline 94244481f690fb2ffae3f528f864f6ab https://www.encodeproject.org/files/ENCFF594WLP/@@download/ENCFF594WLP.bigWig hg19 released biological replicates with identical biosample ENCFF487ITT bigWig fold change over control ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 869659501 ENCODE Processing Pipeline 72d4905f87152fd88bcc1392257f1a1c https://www.encodeproject.org/files/ENCFF487ITT/@@download/ENCFF487ITT.bigWig hg19 released biological replicates with identical biosample ENCFF666HPI bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ 6366854 ENCODE Processing Pipeline 94a2d4a11337fcc5323421521394cb4b https://www.encodeproject.org/files/ENCFF666HPI/@@download/ENCFF666HPI.bed.gz hg19 released biological replicates with identical biosample ENCFF813QDL bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 6690166 ENCODE Processing Pipeline efbfbc0674eba9f54bf91b7305c189f4 https://www.encodeproject.org/files/ENCFF813QDL/@@download/ENCFF813QDL.bed.gz hg19 released biological replicates with identical biosample ENCFF450AEF bed narrowPeak optimal idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF666HPI, ENCFF813QDL, ENCFF936MWV 909701 ENCODE Processing Pipeline fca497b5804264f255cbb22e52ba9c93 https://www.encodeproject.org/files/ENCFF450AEF/@@download/ENCFF450AEF.bed.gz hg19 released biological replicates with identical biosample ENCFF463ACB bigWig signal p-value ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 834382883 ENCODE Processing Pipeline 305db2a5217e279c18e6c219fd68a1dd https://www.encodeproject.org/files/ENCFF463ACB/@@download/ENCFF463ACB.bigWig hg19 released biological replicates with identical biosample ENCFF598RRZ bigWig signal p-value ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ 780885080 ENCODE Processing Pipeline bfecb29c07e8719feb63ba394730c11f https://www.encodeproject.org/files/ENCFF598RRZ/@@download/ENCFF598RRZ.bigWig hg19 released biological replicates with identical biosample ENCFF928JCP bigWig fold change over control ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ 480062686 ENCODE Processing Pipeline be5e62f6c4368295845a226ca857a306 https://www.encodeproject.org/files/ENCFF928JCP/@@download/ENCFF928JCP.bigWig hg19 released biological replicates with identical biosample ENCFF957MAB bigBed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF936MWV 13419117 ENCODE Processing Pipeline 7ed040ee5578f842b0d0cb97a6e9ea9c https://www.encodeproject.org/files/ENCFF957MAB/@@download/ENCFF957MAB.bigBed hg19 released biological replicates with identical biosample ENCFF411LEJ bed narrowPeak conservative idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF666HPI, ENCFF813QDL, ENCFF936MWV 815935 ENCODE Processing Pipeline 4aaa275dc8af52d4925e6080cae466ad https://www.encodeproject.org/files/ENCFF411LEJ/@@download/ENCFF411LEJ.bed.gz hg19 released biological replicates with identical biosample ENCFF073DFV bigWig signal p-value ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF372IRO, ENCFF495JTQ, ENCFF599OHS 826204535 ENCODE Processing Pipeline 03d89356ad6ed16a3ad5735daa45ea76 https://www.encodeproject.org/files/ENCFF073DFV/@@download/ENCFF073DFV.bigWig GRCh38 released biological replicates with identical biosample ENCFF869DUN bigWig signal p-value ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF319TCF, ENCFF495JTQ, ENCFF599OHS 776428941 ENCODE Processing Pipeline 2d947b380960786385b84270e1ca56d6 https://www.encodeproject.org/files/ENCFF869DUN/@@download/ENCFF869DUN.bigWig GRCh38 released biological replicates with identical biosample ENCFF443HSG bigWig fold change over control ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF319TCF, ENCFF372IRO, ENCFF495JTQ, ENCFF599OHS 871207006 ENCODE Processing Pipeline 61d35b8352b2aa4b353120821e8e4fcd https://www.encodeproject.org/files/ENCFF443HSG/@@download/ENCFF443HSG.bigWig GRCh38 released biological replicates with identical biosample ENCFF966TRM bigWig signal p-value ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF319TCF, ENCFF372IRO, ENCFF495JTQ, ENCFF599OHS 853842137 ENCODE Processing Pipeline d7b6cf50c358b0782bfa62c056dd8180 https://www.encodeproject.org/files/ENCFF966TRM/@@download/ENCFF966TRM.bigWig GRCh38 released biological replicates with identical biosample ENCFF847XYX bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF319TCF, ENCFF495JTQ, ENCFF599OHS 6365925 ENCODE Processing Pipeline 1fb1f7eec48076b46e6329d53d9d2603 https://www.encodeproject.org/files/ENCFF847XYX/@@download/ENCFF847XYX.bed.gz GRCh38 released biological replicates with identical biosample ENCFF341YXD bigBed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF847XYX 13256846 ENCODE Processing Pipeline a1a864ee5d9f11c687a57635adc7d362 https://www.encodeproject.org/files/ENCFF341YXD/@@download/ENCFF341YXD.bigBed GRCh38 released biological replicates with identical biosample ENCFF996MRE bed narrowPeak conservative idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF118XHY, ENCFF419RSJ, ENCFF744MES, ENCFF847XYX 815779 ENCODE Processing Pipeline 4da7f790d9af61c020bfd0edb86269a9 https://www.encodeproject.org/files/ENCFF996MRE/@@download/ENCFF996MRE.bed.gz GRCh38 released biological replicates with identical biosample ENCFF242OFV bigWig fold change over control ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF319TCF, ENCFF495JTQ, ENCFF599OHS 478957363 ENCODE Processing Pipeline 1b0bfefd11560201b61d61d8dd28d7a3 https://www.encodeproject.org/files/ENCFF242OFV/@@download/ENCFF242OFV.bigWig GRCh38 released biological replicates with identical biosample ENCFF615QML bigBed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF118XHY 13420520 ENCODE Processing Pipeline 6db1fed30db7db98fd9702119bc0722e https://www.encodeproject.org/files/ENCFF615QML/@@download/ENCFF615QML.bigBed GRCh38 released biological replicates with identical biosample ENCFF850TQR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF996MRE 1355112 ENCODE Processing Pipeline 5a3f0a339510f35507e09e381027da9a https://www.encodeproject.org/files/ENCFF850TQR/@@download/ENCFF850TQR.bigBed GRCh38 released biological replicates with identical biosample ENCFF801OJA bigWig fold change over control ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF372IRO, ENCFF495JTQ, ENCFF599OHS 574489543 ENCODE Processing Pipeline 3039722eef35360e3291de0ca2fb56c5 https://www.encodeproject.org/files/ENCFF801OJA/@@download/ENCFF801OJA.bigWig GRCh38 released biological replicates with identical biosample ENCFF744MES bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF372IRO, ENCFF495JTQ, ENCFF599OHS 6654085 ENCODE Processing Pipeline 57d5465bfeec77b0b3a278c59d14d32a https://www.encodeproject.org/files/ENCFF744MES/@@download/ENCFF744MES.bed.gz GRCh38 released biological replicates with identical biosample ENCFF376LUT bigBed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF744MES 13259993 ENCODE Processing Pipeline 6a56a5ce58dbb5a5c26c6ccf030537ac https://www.encodeproject.org/files/ENCFF376LUT/@@download/ENCFF376LUT.bigBed GRCh38 released biological replicates with identical biosample ENCFF118XHY bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF319TCF, ENCFF372IRO, ENCFF495JTQ, ENCFF599OHS 6949851 ENCODE Processing Pipeline 34035c75f6d9c81748c374c1bee9b315 https://www.encodeproject.org/files/ENCFF118XHY/@@download/ENCFF118XHY.bed.gz GRCh38 released biological replicates with identical biosample ENCFF322KPG bed narrowPeak optimal idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF118XHY, ENCFF419RSJ, ENCFF744MES, ENCFF847XYX 908498 ENCODE Processing Pipeline 750a6bb0aeb0963ca59e5e2e9e84ad18 https://www.encodeproject.org/files/ENCFF322KPG/@@download/ENCFF322KPG.bed.gz GRCh38 released biological replicates with identical biosample ENCFF547DYL bigBed narrowPeak optimal idr thresholded peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF322KPG 1889608 ENCODE Processing Pipeline b25a182c04b058ed8af6117ae9edd30e https://www.encodeproject.org/files/ENCFF547DYL/@@download/ENCFF547DYL.bigBed GRCh38 released biological replicates with identical biosample ENCFF000YNJ bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YNY 704562530 Peggy Farnham, USC 83006e3d8d4e38f9e8a92afd099f557c https://www.encodeproject.org/files/ENCFF000YNJ/@@download/ENCFF000YNJ.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000YNK bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YNZ 753698993 Peggy Farnham, USC 195bdcb676a383f272e8760c9588ecf8 https://www.encodeproject.org/files/ENCFF000YNK/@@download/ENCFF000YNK.bam hg19 archived biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000YNN bigWig signal ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 347811688 Peggy Farnham, USC 3eb997e7061343be6b4e54a188fc5b21 https://www.encodeproject.org/files/ENCFF000YNN/@@download/ENCFF000YNN.bigWig hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000YNO bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VNE 358612 Peggy Farnham, USC 3fa531b3cc4ef065724a1c0531de2562 https://www.encodeproject.org/files/ENCFF000YNO/@@download/ENCFF000YNO.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000YNY fastq reads ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 1 32 single-ended 541825410 Peggy Farnham, USC 0466385322288dd0f1e663828188c369 https://www.encodeproject.org/files/ENCFF000YNY/@@download/ENCFF000YNY.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000YNZ fastq reads ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 1 32 single-ended 576686589 Peggy Farnham, USC 3fe2825e6560a35e00c6552072d864af https://www.encodeproject.org/files/ENCFF000YNZ/@@download/ENCFF000YNZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000VEK/ released inconsistent control read length biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF001VNE bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 124606 Peggy Farnham, USC d7f7e77f95b44fbe690dfb976de51a5a https://www.encodeproject.org/files/ENCFF001VNE/@@download/ENCFF001VNE.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF002CWQ bed narrowPeak optimal idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 209407 ENCODE Consortium Analysis Working Group 36c61da27aae1632856794e5867b58b3 https://www.encodeproject.org/files/ENCFF002CWQ/@@download/ENCFF002CWQ.bed.gz hg19 archived missing derived_from, biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF150JOH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CWQ 421738 ENCODE Consortium b47f2906d3ab4c334a01946a5c1dd106 https://www.encodeproject.org/files/ENCFF150JOH/@@download/ENCFF150JOH.bigBed hg19 archived biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF252WPQ bam unfiltered alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YNY, ENCFF643CGH 707160552 ENCODE Processing Pipeline 61699d434e9a142c78934b9fd7049f5a https://www.encodeproject.org/files/ENCFF252WPQ/@@download/ENCFF252WPQ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF829VOR bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF340JWK, ENCFF355SGP 2807656 ENCODE Processing Pipeline 034d781a3942a300075bd95cfb274084 https://www.encodeproject.org/files/ENCFF829VOR/@@download/ENCFF829VOR.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF224NNV bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF340JWK, ENCFF355SGP, ENCFF779CRV 5002808 ENCODE Processing Pipeline 8f066b0e916b306aa90dc8a591f6b6a1 https://www.encodeproject.org/files/ENCFF224NNV/@@download/ENCFF224NNV.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF654HDB bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF829VOR 6072388 ENCODE Processing Pipeline db72d7e43f650bde2f26bb6a29992e2c https://www.encodeproject.org/files/ENCFF654HDB/@@download/ENCFF654HDB.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF340JWK bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNZ, ENCFF643CGH 359755177 ENCODE Processing Pipeline 73d6aa313a2989308ff4864895fcfee5 https://www.encodeproject.org/files/ENCFF340JWK/@@download/ENCFF340JWK.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF441UQW bigWig fold change over control ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF779CRV 202442376 ENCODE Processing Pipeline b84361b2119faf488c82557be840995d https://www.encodeproject.org/files/ENCFF441UQW/@@download/ENCFF441UQW.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF781FFF bigWig fold change over control ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF340JWK, ENCFF355SGP, ENCFF779CRV 342830991 ENCODE Processing Pipeline 0a3b972d6b2a46451cb01c142c29233b https://www.encodeproject.org/files/ENCFF781FFF/@@download/ENCFF781FFF.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF440KMN bed narrowPeak conservative idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF224NNV, ENCFF419RSJ, ENCFF510BVA, ENCFF829VOR 74680 ENCODE Processing Pipeline a935b660b0dc6d69044c43bf15f3c914 https://www.encodeproject.org/files/ENCFF440KMN/@@download/ENCFF440KMN.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF173TXA bed narrowPeak optimal idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF224NNV, ENCFF419RSJ, ENCFF510BVA, ENCFF829VOR 185059 ENCODE Processing Pipeline c395f505b604dfc3a2e6759e674e5857 https://www.encodeproject.org/files/ENCFF173TXA/@@download/ENCFF173TXA.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF847QQW bigWig signal p-value ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF779CRV 364633911 ENCODE Processing Pipeline 5ce3131d6c4e50cd62909a217fdd71f2 https://www.encodeproject.org/files/ENCFF847QQW/@@download/ENCFF847QQW.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF779CRV bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YNY, ENCFF643CGH 361753558 ENCODE Processing Pipeline 5bac9acabf257870b0dcc4a40cf81ad5 https://www.encodeproject.org/files/ENCFF779CRV/@@download/ENCFF779CRV.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF259SDS bam unfiltered alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNZ, ENCFF643CGH 755993185 ENCODE Processing Pipeline 0e75540dc5f13f3b410d32a10a9286a4 https://www.encodeproject.org/files/ENCFF259SDS/@@download/ENCFF259SDS.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF019HZN bigWig signal p-value ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF340JWK, ENCFF355SGP, ENCFF779CRV 457836931 ENCODE Processing Pipeline 8ecb30c8e0d4a2d8bdffb5d2b6649ad2 https://www.encodeproject.org/files/ENCFF019HZN/@@download/ENCFF019HZN.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF362RCK bigWig fold change over control ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF340JWK, ENCFF355SGP 147962097 ENCODE Processing Pipeline d7f7d32cf7456a281578504fb5fbcf3c https://www.encodeproject.org/files/ENCFF362RCK/@@download/ENCFF362RCK.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF223INH bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF224NNV 10932693 ENCODE Processing Pipeline 66909e56650c48bcc2d70deba6653f38 https://www.encodeproject.org/files/ENCFF223INH/@@download/ENCFF223INH.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF827ENU bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF173TXA 394290 ENCODE Processing Pipeline 99ec60287a0b70327fa7981e53900bc6 https://www.encodeproject.org/files/ENCFF827ENU/@@download/ENCFF827ENU.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF510BVA bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF355SGP, ENCFF779CRV 4116494 ENCODE Processing Pipeline 6ea655dbcbd66b25fbd1057e53281e70 https://www.encodeproject.org/files/ENCFF510BVA/@@download/ENCFF510BVA.bed.gz GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF320BBP bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF510BVA 9540623 ENCODE Processing Pipeline cf66e399a87de07437f390df330e00eb https://www.encodeproject.org/files/ENCFF320BBP/@@download/ENCFF320BBP.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF475QTZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF440KMN 181553 ENCODE Processing Pipeline 74cfcb7432933a8543dd0edf704395ad https://www.encodeproject.org/files/ENCFF475QTZ/@@download/ENCFF475QTZ.bigBed GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF864IKU bigWig signal p-value ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF340JWK, ENCFF355SGP 463316310 ENCODE Processing Pipeline fa8cb3c7d2fb3bd7f3c4b0e30d04dc69 https://www.encodeproject.org/files/ENCFF864IKU/@@download/ENCFF864IKU.bigWig GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF896RKY bam unfiltered alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YNY, ENCFF807MUK 705497799 ENCODE Processing Pipeline efb32a58ec6cc0e4f354299d72e66d4f https://www.encodeproject.org/files/ENCFF896RKY/@@download/ENCFF896RKY.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF990JRT bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YNY, ENCFF807MUK 362157879 ENCODE Processing Pipeline 6271700d48d736a457c31ab5df5a2745 https://www.encodeproject.org/files/ENCFF990JRT/@@download/ENCFF990JRT.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF778HCA bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNZ, ENCFF807MUK 360015772 ENCODE Processing Pipeline be39b4edc4c7a2e7b1c2248a710c464f https://www.encodeproject.org/files/ENCFF778HCA/@@download/ENCFF778HCA.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF543ZGZ bigWig signal p-value ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF990JRT 345756474 ENCODE Processing Pipeline c81913c08ea46f39d156f2b4e8463fca https://www.encodeproject.org/files/ENCFF543ZGZ/@@download/ENCFF543ZGZ.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF706HJR bigWig signal p-value ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF778HCA 396624681 ENCODE Processing Pipeline be7e934927d36753c0212bb5b2deb6f7 https://www.encodeproject.org/files/ENCFF706HJR/@@download/ENCFF706HJR.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF850TLB bigWig fold change over control ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF778HCA 148441951 ENCODE Processing Pipeline c82f898714616b4e48c4e629c6679df9 https://www.encodeproject.org/files/ENCFF850TLB/@@download/ENCFF850TLB.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF716IDC bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF061TTI 9561263 ENCODE Processing Pipeline 40e702e9c06d5f609dce87a548e65aae https://www.encodeproject.org/files/ENCFF716IDC/@@download/ENCFF716IDC.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF407RUQ bigWig fold change over control ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF778HCA, ENCFF990JRT 349894995 ENCODE Processing Pipeline a6535aa86feb563dea2e14e9e61777f5 https://www.encodeproject.org/files/ENCFF407RUQ/@@download/ENCFF407RUQ.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF358BOB bam unfiltered alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNZ, ENCFF807MUK 754520198 ENCODE Processing Pipeline 285b51da69ac9bb93129db5d29bd013f https://www.encodeproject.org/files/ENCFF358BOB/@@download/ENCFF358BOB.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF866WJN bigWig signal p-value ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF778HCA, ENCFF990JRT 501715344 ENCODE Processing Pipeline 1c40c69dfbee96251ba8c24e737c7e45 https://www.encodeproject.org/files/ENCFF866WJN/@@download/ENCFF866WJN.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF732HOE bed narrowPeak optimal idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF061TTI, ENCFF163ZFQ, ENCFF717ZNF 185950 ENCODE Processing Pipeline 0a5986cb974e654436fe293de05e5274 https://www.encodeproject.org/files/ENCFF732HOE/@@download/ENCFF732HOE.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF642ZZB bigWig fold change over control ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF990JRT 206174966 ENCODE Processing Pipeline 387a62df7218d7aa5afe68ff936b07f8 https://www.encodeproject.org/files/ENCFF642ZZB/@@download/ENCFF642ZZB.bigWig hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF717ZNF bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF778HCA, ENCFF990JRT 5049856 ENCODE Processing Pipeline 4b8b4d5a7dc25ccddf6939ee2c2f2b65 https://www.encodeproject.org/files/ENCFF717ZNF/@@download/ENCFF717ZNF.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF350KQQ bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF163ZFQ 6076431 ENCODE Processing Pipeline 36f1182fb21d03fc4314dd1449270330 https://www.encodeproject.org/files/ENCFF350KQQ/@@download/ENCFF350KQQ.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF727SRR bed narrowPeak conservative idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF061TTI, ENCFF163ZFQ, ENCFF717ZNF 74527 ENCODE Processing Pipeline 37886e11895c8e10ce30d0389d587035 https://www.encodeproject.org/files/ENCFF727SRR/@@download/ENCFF727SRR.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF342ILG bigBed narrowPeak conservative idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF727SRR 181335 ENCODE Processing Pipeline af0ec9817e97b52fc17d2c5cd5d89cf3 https://www.encodeproject.org/files/ENCFF342ILG/@@download/ENCFF342ILG.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF919CIV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF732HOE 394477 ENCODE Processing Pipeline 3ad546e93813b37ec95e30221f2b7f32 https://www.encodeproject.org/files/ENCFF919CIV/@@download/ENCFF919CIV.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF061TTI bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF990JRT 4134004 ENCODE Processing Pipeline 460d8efe582bd8ac3d839aaaa1cb871e https://www.encodeproject.org/files/ENCFF061TTI/@@download/ENCFF061TTI.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF163ZFQ bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF778HCA 2818433 ENCODE Processing Pipeline c6f4e290a05030a7b7d4cb89d6b57354 https://www.encodeproject.org/files/ENCFF163ZFQ/@@download/ENCFF163ZFQ.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF754NTO bigBed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF717ZNF 10948931 ENCODE Processing Pipeline 48c9de9d92529ce79c359c99e1b8fef4 https://www.encodeproject.org/files/ENCFF754NTO/@@download/ENCFF754NTO.bigBed hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000XIA bam alignments ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XII 479346988 Michael Snyder, Stanford b7874016b493c54616ad7af429a49ed0 https://www.encodeproject.org/files/ENCFF000XIA/@@download/ENCFF000XIA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIB bam alignments ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XIP 298488929 Michael Snyder, Stanford be1a6deefb13e1f9c06540b40eb84aae https://www.encodeproject.org/files/ENCFF000XIB/@@download/ENCFF000XIB.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIC bigBed narrowPeak peaks ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIV 1646359 Michael Snyder, Stanford 20abf74f9aba340f60a0ea512a8fc139 https://www.encodeproject.org/files/ENCFF000XIC/@@download/ENCFF000XIC.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000XIF bigWig signal ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 279024881 Michael Snyder, Stanford dc032df79779021c215dce3e5bbe679e https://www.encodeproject.org/files/ENCFF000XIF/@@download/ENCFF000XIF.bigWig hg19 released low read length missing derived_from, biological replicates with identical biosample ENCFF000XII fastq reads ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1141038601 Michael Snyder, Stanford 1b3746198a720c7c959edb5e2d901a4c https://www.encodeproject.org/files/ENCFF000XII/@@download/ENCFF000XII.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF000XIP fastq reads ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 846936288 Michael Snyder, Stanford b02845d480fca10adf9b3337f64db8fa https://www.encodeproject.org/files/ENCFF000XIP/@@download/ENCFF000XIP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released low read length, inconsistent control read length biological replicates with identical biosample ENCFF001VIV bed narrowPeak peaks ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 632299 Michael Snyder, Stanford 3122b2ec01c43e511fa4779f20c22578 https://www.encodeproject.org/files/ENCFF001VIV/@@download/ENCFF001VIV.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF002CST bed narrowPeak optimal idr thresholded peaks ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 310642 ENCODE Consortium Analysis Working Group 01dcdbaede61ced878ea89eabffe613c https://www.encodeproject.org/files/ENCFF002CST/@@download/ENCFF002CST.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF500WCE bigBed narrowPeak optimal idr thresholded peaks ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CST 808690 ENCODE Consortium f65324dd508f21f09a780b834ff4c6e2 https://www.encodeproject.org/files/ENCFF500WCE/@@download/ENCFF500WCE.bigBed hg19 released low read length biological replicates with identical biosample ENCFF000OQT bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000ORG 910115238 Richard Myers, HAIB 402b026e5071994298fe2881a8a67ca4 https://www.encodeproject.org/files/ENCFF000OQT/@@download/ENCFF000OQT.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OQV bigBed broadPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UBW 1128907 Richard Myers, HAIB dffb0c62a2dbcf4013e2f623ea612643 https://www.encodeproject.org/files/ENCFF000OQV/@@download/ENCFF000OQV.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OQW bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000ORK 886177594 Richard Myers, HAIB de745c0e0d4007a38eddc2006f5da196 https://www.encodeproject.org/files/ENCFF000OQW/@@download/ENCFF000OQW.bam hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OQX bigBed broadPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UBX 2733888 Richard Myers, HAIB 8aed0edbb63788ddd188621004281391 https://www.encodeproject.org/files/ENCFF000OQX/@@download/ENCFF000OQX.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF000OQZ bigWig raw signal ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 43591683 Richard Myers, HAIB 561c64a583e2c4cbf92d00cc8f8c67f7 https://www.encodeproject.org/files/ENCFF000OQZ/@@download/ENCFF000OQZ.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000ORB bigWig raw signal ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 71304324 Richard Myers, HAIB e0eab4ab3af87a067c8338f571d2daf1 https://www.encodeproject.org/files/ENCFF000ORB/@@download/ENCFF000ORB.bigWig hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF000ORG fastq reads ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1015876633 Richard Myers, HAIB b47c3daab013e08c3475eb585aebe8bb https://www.encodeproject.org/files/ENCFF000ORG/@@download/ENCFF000ORG.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, low read depth biological replicates with identical biosample ENCFF000ORK fastq reads ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1446165382 Richard Myers, HAIB 0aa2a597eafce86d9bfa7ccb7b6cc507 https://www.encodeproject.org/files/ENCFF000ORK/@@download/ENCFF000ORK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OSP/ released low read length, low read depth biological replicates with identical biosample ENCFF001UBW bed broadPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 669487 Richard Myers, HAIB c2a1dfa1df04db70416436e1c522e3af https://www.encodeproject.org/files/ENCFF001UBW/@@download/ENCFF001UBW.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF001UBX bed broadPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 1398278 Richard Myers, HAIB 92984b966ef05a0d5ddcbaebda84cd6c https://www.encodeproject.org/files/ENCFF001UBX/@@download/ENCFF001UBX.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF002CJD bed narrowPeak optimal idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 442368 ENCODE Consortium Analysis Working Group 9194d81a93b97c5ec0d818439baead9d https://www.encodeproject.org/files/ENCFF002CJD/@@download/ENCFF002CJD.bed.gz hg19 archived low read length, low read depth biological replicates with identical biosample, missing derived_from ENCFF979YKM bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CJD 1099644 ENCODE Consortium 6cab3423e7c8187e193ee24d411380ec https://www.encodeproject.org/files/ENCFF979YKM/@@download/ENCFF979YKM.bigBed hg19 archived low read length, low read depth biological replicates with identical biosample ENCFF255HOK bam unfiltered alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORG, ENCFF643CGH 1252520166 ENCODE Processing Pipeline 6aa5c55a0c519859f5bef52c44604433 https://www.encodeproject.org/files/ENCFF255HOK/@@download/ENCFF255HOK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF079DUB bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORG, ENCFF643CGH 686200736 ENCODE Processing Pipeline 8dc9291215448a1964aee6d8956a40b7 https://www.encodeproject.org/files/ENCFF079DUB/@@download/ENCFF079DUB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF167SZW bam unfiltered alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORK, ENCFF643CGH 1843911910 ENCODE Processing Pipeline 41b0d78fa70747a46e812b945f3f67eb https://www.encodeproject.org/files/ENCFF167SZW/@@download/ENCFF167SZW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF712MPW bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORK, ENCFF643CGH 979513401 ENCODE Processing Pipeline 883ae5ff85be02f25e411a1c6e931a77 https://www.encodeproject.org/files/ENCFF712MPW/@@download/ENCFF712MPW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF256PPM bam unfiltered alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORG, ENCFF807MUK 1250711133 ENCODE Processing Pipeline 2e2d8af1bce3706fb1ca76aa34ff2689 https://www.encodeproject.org/files/ENCFF256PPM/@@download/ENCFF256PPM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF720NFF bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORG, ENCFF807MUK 686705288 ENCODE Processing Pipeline 4dc24b98db700f734095131f5c8be1e9 https://www.encodeproject.org/files/ENCFF720NFF/@@download/ENCFF720NFF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF358LZS bam unfiltered alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORK, ENCFF807MUK 1841250714 ENCODE Processing Pipeline ddead5d83321572932d7ab9649763109 https://www.encodeproject.org/files/ENCFF358LZS/@@download/ENCFF358LZS.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF520MDX bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORK, ENCFF807MUK 980130969 ENCODE Processing Pipeline e8ce4ee1d3bac77cb7735fbb5cf717e1 https://www.encodeproject.org/files/ENCFF520MDX/@@download/ENCFF520MDX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF316ZKV bigWig signal p-value ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF720NFF 409317845 ENCODE Processing Pipeline 669b78a98d1a34243c6fb00cb83371a9 https://www.encodeproject.org/files/ENCFF316ZKV/@@download/ENCFF316ZKV.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF073KHN bigWig signal p-value ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF079DUB, ENCFF948LKH 389817886 ENCODE Processing Pipeline 3774b7faf86de9d362e46782ed2597bf https://www.encodeproject.org/files/ENCFF073KHN/@@download/ENCFF073KHN.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF413PQK bigWig signal p-value ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF520MDX 458769970 ENCODE Processing Pipeline d13a7f674fa246ddbe83c785f31bdb01 https://www.encodeproject.org/files/ENCFF413PQK/@@download/ENCFF413PQK.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF021INW bigWig signal p-value ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712MPW, ENCFF948LKH 509183066 ENCODE Processing Pipeline 4cc321a557c431eaeb00944e06b22ac3 https://www.encodeproject.org/files/ENCFF021INW/@@download/ENCFF021INW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF976USD bigWig signal p-value ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF520MDX, ENCFF720NFF 536662716 ENCODE Processing Pipeline 589972575534f20574220b9b6dbbcb37 https://www.encodeproject.org/files/ENCFF976USD/@@download/ENCFF976USD.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF786QHR bigWig fold change over control ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF720NFF 268109157 ENCODE Processing Pipeline be3b55e69818f41da991b297ab32892a https://www.encodeproject.org/files/ENCFF786QHR/@@download/ENCFF786QHR.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF834EMW bigWig signal p-value ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF079DUB, ENCFF712MPW, ENCFF948LKH 536402085 ENCODE Processing Pipeline 661f26223a0939690375301fd5718e9f https://www.encodeproject.org/files/ENCFF834EMW/@@download/ENCFF834EMW.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF275IIJ bigWig fold change over control ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF520MDX 340876940 ENCODE Processing Pipeline 098eb553ca79e0f1dfd731bce3c6c376 https://www.encodeproject.org/files/ENCFF275IIJ/@@download/ENCFF275IIJ.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF342XVZ bigWig fold change over control ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF079DUB, ENCFF948LKH 267578811 ENCODE Processing Pipeline 85fd9fea65d799fce76c4dd012d1d9ca https://www.encodeproject.org/files/ENCFF342XVZ/@@download/ENCFF342XVZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF573RFU bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF520MDX 6077110 ENCODE Processing Pipeline 599496252528fdea7244093fa141342e https://www.encodeproject.org/files/ENCFF573RFU/@@download/ENCFF573RFU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF522YHU bigWig fold change over control ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF520MDX, ENCFF720NFF 521467347 ENCODE Processing Pipeline 23c17d4f0058a10059ff55e1857fa822 https://www.encodeproject.org/files/ENCFF522YHU/@@download/ENCFF522YHU.bigWig hg19 released low read length, low read depth biological replicates with identical biosample ENCFF718URH bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF720NFF 6464351 ENCODE Processing Pipeline 41b95c7e11d006b7962873e1e125fd4c https://www.encodeproject.org/files/ENCFF718URH/@@download/ENCFF718URH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF194VYF bigBed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF718URH 12078525 ENCODE Processing Pipeline 881f00b66a855cde372882af76756080 https://www.encodeproject.org/files/ENCFF194VYF/@@download/ENCFF194VYF.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF214YQS bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF356DXM, ENCFF520MDX, ENCFF720NFF 6848113 ENCODE Processing Pipeline bb280f43953f5edbadf681e4a18d89fa https://www.encodeproject.org/files/ENCFF214YQS/@@download/ENCFF214YQS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF355PUT bigBed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF573RFU 12023051 ENCODE Processing Pipeline 14f3b333f38245546fcf818d7552ee82 https://www.encodeproject.org/files/ENCFF355PUT/@@download/ENCFF355PUT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF010JNY bigBed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF214YQS 12270443 ENCODE Processing Pipeline 2a832751c8b650d5b83e02707d774e83 https://www.encodeproject.org/files/ENCFF010JNY/@@download/ENCFF010JNY.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF627MAZ bigWig fold change over control ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712MPW, ENCFF948LKH 339319734 ENCODE Processing Pipeline d67ba63173c7d0b746f170cc4e495248 https://www.encodeproject.org/files/ENCFF627MAZ/@@download/ENCFF627MAZ.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF148BJW bed narrowPeak conservative idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF214YQS, ENCFF573RFU, ENCFF718URH 457058 ENCODE Processing Pipeline 2902df91e4906542d3dfe8f6b1c71943 https://www.encodeproject.org/files/ENCFF148BJW/@@download/ENCFF148BJW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF135GBT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF148BJW 1110855 ENCODE Processing Pipeline 2faf7efb3c018d44f9078f0d64b21529 https://www.encodeproject.org/files/ENCFF135GBT/@@download/ENCFF135GBT.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF375BFR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF450NDU 1355910 ENCODE Processing Pipeline e7658068c61e747008cd136564e3bb8c https://www.encodeproject.org/files/ENCFF375BFR/@@download/ENCFF375BFR.bigBed hg19 released low read length, low read depth biological replicates with identical biosample ENCFF450NDU bed narrowPeak optimal idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF214YQS, ENCFF573RFU, ENCFF718URH 594411 ENCODE Processing Pipeline 90b03cced3ab0a76845d32604a921ccd https://www.encodeproject.org/files/ENCFF450NDU/@@download/ENCFF450NDU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF655OPV bigWig fold change over control ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF079DUB, ENCFF712MPW, ENCFF948LKH 525214897 ENCODE Processing Pipeline 2e0197d3eac429ebc573e559c58e2591 https://www.encodeproject.org/files/ENCFF655OPV/@@download/ENCFF655OPV.bigWig GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF488WSK bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF079DUB, ENCFF948LKH 6390256 ENCODE Processing Pipeline 721b9a49441e4a0344ab97877195cada https://www.encodeproject.org/files/ENCFF488WSK/@@download/ENCFF488WSK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF633FYK bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF712MPW, ENCFF948LKH 6146628 ENCODE Processing Pipeline 485f8c6f242c9bf4964af9f6d35119c5 https://www.encodeproject.org/files/ENCFF633FYK/@@download/ENCFF633FYK.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF308KBZ bigBed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF633FYK 12117466 ENCODE Processing Pipeline 0c9d51f02e90d9ece3ea64183108295f https://www.encodeproject.org/files/ENCFF308KBZ/@@download/ENCFF308KBZ.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF340BII bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF079DUB, ENCFF712MPW, ENCFF948LKH 6748227 ENCODE Processing Pipeline f3ed1420b468331ff5091b290cdb59c8 https://www.encodeproject.org/files/ENCFF340BII/@@download/ENCFF340BII.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF877WOA bigBed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF488WSK 11989471 ENCODE Processing Pipeline 4abd16530598301f43a12604df4689d4 https://www.encodeproject.org/files/ENCFF877WOA/@@download/ENCFF877WOA.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF915EVH bigBed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340BII 12154840 ENCODE Processing Pipeline 545c5953b2054ccd8da99d3186f20807 https://www.encodeproject.org/files/ENCFF915EVH/@@download/ENCFF915EVH.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF417QTQ bed narrowPeak conservative idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340BII, ENCFF419RSJ, ENCFF488WSK, ENCFF633FYK 454259 ENCODE Processing Pipeline f1486f0535e1d842b3693080892ade44 https://www.encodeproject.org/files/ENCFF417QTQ/@@download/ENCFF417QTQ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF418QVJ bed narrowPeak optimal idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF340BII, ENCFF419RSJ, ENCFF488WSK, ENCFF633FYK 584500 ENCODE Processing Pipeline e02c29a59b2bea50cecbdaf1d09060a2 https://www.encodeproject.org/files/ENCFF418QVJ/@@download/ENCFF418QVJ.bed.gz GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF801OFE bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF418QVJ 1341917 ENCODE Processing Pipeline c8cb5a5ccf90e07f15dc2af5db82a477 https://www.encodeproject.org/files/ENCFF801OFE/@@download/ENCFF801OFE.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF058LIG bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF417QTQ 1107997 ENCODE Processing Pipeline db572d8cd78c88c6cc53ee886ffb4871 https://www.encodeproject.org/files/ENCFF058LIG/@@download/ENCFF058LIG.bigBed GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF000AMI bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF000AMS 906717198 Bradley Bernstein, Broad 902c9ab7ee202580fbacd1e51f64e154 https://www.encodeproject.org/files/ENCFF000AMI/@@download/ENCFF000AMI.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000AMJ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AMU 1382274968 Bradley Bernstein, Broad 0ace91be37193a4b77eaa6abb278deac https://www.encodeproject.org/files/ENCFF000AMJ/@@download/ENCFF000AMJ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000AMK bigBed broadPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE ENCFF001STI 1678098 Bradley Bernstein, Broad 7b74105541194e9f773e5ab8f66b3a2d https://www.encodeproject.org/files/ENCFF000AMK/@@download/ENCFF000AMK.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000AML bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 3 ENCFF000AMR 587438044 Bradley Bernstein, Broad dd15efd9dd52da94f37a52c726f85c8c https://www.encodeproject.org/files/ENCFF000AML/@@download/ENCFF000AML.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000AMN bigWig signal ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 463374805 Bradley Bernstein, Broad 3d72295021c7cdea8da07bf260162585 https://www.encodeproject.org/files/ENCFF000AMN/@@download/ENCFF000AMN.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, missing raw data in replicate missing control alignments ENCFF000AMR fastq reads ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 3 1 36 single-ended 579912615 Bradley Bernstein, Broad d46556dc7514a33e4306e31861bac08e https://www.encodeproject.org/files/ENCFF000AMR/@@download/ENCFF000AMR.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AMT/ archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000AMS fastq reads ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 938683776 Bradley Bernstein, Broad 2a8d04be150ae19ea8dd36bd2075a673 https://www.encodeproject.org/files/ENCFF000AMS/@@download/ENCFF000AMS.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AMM/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000AMU fastq reads ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 1362288096 Bradley Bernstein, Broad ffa31436f5c4dfee84f097c545d66201 https://www.encodeproject.org/files/ENCFF000AMU/@@download/ENCFF000AMU.fastq.gz Illumina HiSeq 2000 /files/ENCFF000AMM/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF001STI bed broadPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 887394 Bradley Bernstein, Broad 3a5670c981b8d38f893d9b327a229f87 https://www.encodeproject.org/files/ENCFF001STI/@@download/ENCFF001STI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, missing raw data in replicate missing control alignments ENCFF177GLZ bam unfiltered alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF000AMR, ENCFF643CGH 702155918 ENCODE Processing Pipeline bbd17be561b999e47918c91f47670cf7 https://www.encodeproject.org/files/ENCFF177GLZ/@@download/ENCFF177GLZ.bam GRCh38 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF053PTC bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF000AMR, ENCFF643CGH 62068883 ENCODE Processing Pipeline 5eacde44d9755d8354b85140d2e2b537 https://www.encodeproject.org/files/ENCFF053PTC/@@download/ENCFF053PTC.bam GRCh38 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF685DBQ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AMS, ENCFF643CGH 597166259 ENCODE Processing Pipeline 80b5127d561bdb6994947ba2a28da963 https://www.encodeproject.org/files/ENCFF685DBQ/@@download/ENCFF685DBQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF835VKE bam unfiltered alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AMS, ENCFF643CGH 1165725129 ENCODE Processing Pipeline 1b0aedf1b556f7a3b767376b261b3ae0 https://www.encodeproject.org/files/ENCFF835VKE/@@download/ENCFF835VKE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF853NEM bam unfiltered alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AMU, ENCFF643CGH 1696006426 ENCODE Processing Pipeline e39b1cfad09ba4c36e0c5c82cb6c9859 https://www.encodeproject.org/files/ENCFF853NEM/@@download/ENCFF853NEM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF112XEQ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AMU, ENCFF643CGH 827732842 ENCODE Processing Pipeline ca6046feb226861fd3d1836d81c05d7d https://www.encodeproject.org/files/ENCFF112XEQ/@@download/ENCFF112XEQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF164YQG bam unfiltered alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF000AMR, ENCFF807MUK 699374633 ENCODE Processing Pipeline ace90db49f063015af3273f46a8f79da https://www.encodeproject.org/files/ENCFF164YQG/@@download/ENCFF164YQG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF400CEE bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF000AMR, ENCFF807MUK 62124980 ENCODE Processing Pipeline d0e094a1c2d5ed533ca67f2167822736 https://www.encodeproject.org/files/ENCFF400CEE/@@download/ENCFF400CEE.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF440ELM bam unfiltered alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AMS, ENCFF807MUK 1161822119 ENCODE Processing Pipeline 39a6a42e6e43553d15d8203430d58edc https://www.encodeproject.org/files/ENCFF440ELM/@@download/ENCFF440ELM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF157DVB bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AMS, ENCFF807MUK 597529777 ENCODE Processing Pipeline ec4133cb07954870d5b43b484407765a https://www.encodeproject.org/files/ENCFF157DVB/@@download/ENCFF157DVB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF523HWB bam unfiltered alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AMU, ENCFF807MUK 1687521992 ENCODE Processing Pipeline 268cf3590afbfef765062ecd1ef68946 https://www.encodeproject.org/files/ENCFF523HWB/@@download/ENCFF523HWB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF520GVQ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AMU, ENCFF807MUK 828128330 ENCODE Processing Pipeline f0b457670806297c625863059e459e9e https://www.encodeproject.org/files/ENCFF520GVQ/@@download/ENCFF520GVQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF684ESA bigBed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF603MIK 13343221 ENCODE Processing Pipeline 96b2af146c8f595b93da9132b53c3d5e https://www.encodeproject.org/files/ENCFF684ESA/@@download/ENCFF684ESA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF917TSI bigBed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF209GQK 13632146 ENCODE Processing Pipeline 8ca410570a4320bbca25145767eed676 https://www.encodeproject.org/files/ENCFF917TSI/@@download/ENCFF917TSI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF948FLQ bigWig signal p-value ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF520GVQ 537273030 ENCODE Processing Pipeline caacff4a950e8f708350fc73e779a936 https://www.encodeproject.org/files/ENCFF948FLQ/@@download/ENCFF948FLQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF933FRR bigWig fold change over control ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF520GVQ 514585058 ENCODE Processing Pipeline 92f193860ca43f3ff53726e4de8196e9 https://www.encodeproject.org/files/ENCFF933FRR/@@download/ENCFF933FRR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF619QNK bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF910TER 1669565 ENCODE Processing Pipeline add3e00523a750644f5c0079238629d9 https://www.encodeproject.org/files/ENCFF619QNK/@@download/ENCFF619QNK.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF485ZSI bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF520GVQ 5468945 ENCODE Processing Pipeline e8a1f5c43574d77028d65bead41854c9 https://www.encodeproject.org/files/ENCFF485ZSI/@@download/ENCFF485ZSI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF603MIK bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF157DVB, ENCFF248YTS 5314419 ENCODE Processing Pipeline ee5a355f368bb1f332b14bf6fe358d49 https://www.encodeproject.org/files/ENCFF603MIK/@@download/ENCFF603MIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF209GQK bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF157DVB, ENCFF248YTS, ENCFF520GVQ 5958213 ENCODE Processing Pipeline c232d4bdab08b6e453bb224225971cec https://www.encodeproject.org/files/ENCFF209GQK/@@download/ENCFF209GQK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF192AEB bigBed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF485ZSI 13643859 ENCODE Processing Pipeline bd47bd5624406dbe8aea0d11d5ef8325 https://www.encodeproject.org/files/ENCFF192AEB/@@download/ENCFF192AEB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF013JRB bigBed narrowPeak optimal idr thresholded peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF449NOT 1676446 ENCODE Processing Pipeline f7c288e5fb6f125598c1db75a0fffa75 https://www.encodeproject.org/files/ENCFF013JRB/@@download/ENCFF013JRB.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF326SVX bigWig signal p-value ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF685DBQ 563964069 ENCODE Processing Pipeline 57d4f4c2ab48516e12a32f0bee0bc0f2 https://www.encodeproject.org/files/ENCFF326SVX/@@download/ENCFF326SVX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF591RXQ bigWig fold change over control ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF157DVB, ENCFF248YTS 397155379 ENCODE Processing Pipeline 152b51abf9c1466ba11972c74cc23b82 https://www.encodeproject.org/files/ENCFF591RXQ/@@download/ENCFF591RXQ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF449NOT bed narrowPeak optimal idr thresholded peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF209GQK, ENCFF485ZSI, ENCFF603MIK 887114 ENCODE Processing Pipeline 00020b4b010d07d38f7110db620ee494 https://www.encodeproject.org/files/ENCFF449NOT/@@download/ENCFF449NOT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF860NEG bigWig signal p-value ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF157DVB, ENCFF248YTS 513447234 ENCODE Processing Pipeline 438fe86106bacd026b8965f6cd46fb8b https://www.encodeproject.org/files/ENCFF860NEG/@@download/ENCFF860NEG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF340RFN bigWig fold change over control ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF157DVB, ENCFF248YTS, ENCFF520GVQ 721100190 ENCODE Processing Pipeline c4b956fd03feccb73aebd3f7cc9f9f62 https://www.encodeproject.org/files/ENCFF340RFN/@@download/ENCFF340RFN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF156RFW bigWig fold change over control ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF685DBQ 396802882 ENCODE Processing Pipeline 6c21fdf35b981ac7d96ef19c6a3b6c64 https://www.encodeproject.org/files/ENCFF156RFW/@@download/ENCFF156RFW.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF910TER bed narrowPeak optimal idr thresholded peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF419RSJ, ENCFF578KAH, ENCFF855NJI, ENCFF890TVV 884292 ENCODE Processing Pipeline 0f1faa172b8c46f8eac9ac3874c20c16 https://www.encodeproject.org/files/ENCFF910TER/@@download/ENCFF910TER.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF219JXX bigWig signal p-value ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF157DVB, ENCFF248YTS, ENCFF520GVQ 757758739 ENCODE Processing Pipeline 8e08476957d34cda08ff0fc8c66fe85d https://www.encodeproject.org/files/ENCFF219JXX/@@download/ENCFF219JXX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF392EBD bigWig signal p-value ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF112XEQ, ENCFF685DBQ 760686367 ENCODE Processing Pipeline 3abb83ab949989e45573153eba0b6301 https://www.encodeproject.org/files/ENCFF392EBD/@@download/ENCFF392EBD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF031CXE bigWig fold change over control ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF112XEQ, ENCFF685DBQ 722441253 ENCODE Processing Pipeline 92ca8bdc0155b2957fa24ade1f56101e https://www.encodeproject.org/files/ENCFF031CXE/@@download/ENCFF031CXE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF146KTX bigWig signal p-value ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF112XEQ 561325030 ENCODE Processing Pipeline 62932b5777d403dd7fda6290d593625e https://www.encodeproject.org/files/ENCFF146KTX/@@download/ENCFF146KTX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF773THK bigWig fold change over control ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF112XEQ 514026981 ENCODE Processing Pipeline e5db7e37350132b0bfa2ce478f477389 https://www.encodeproject.org/files/ENCFF773THK/@@download/ENCFF773THK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF578KAH bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF112XEQ 5428061 ENCODE Processing Pipeline 6ba116246109d47d0b87056ffd88e21a https://www.encodeproject.org/files/ENCFF578KAH/@@download/ENCFF578KAH.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF855NJI bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF685DBQ 5234024 ENCODE Processing Pipeline abcc8e045c65823f9e876e63d02362cf https://www.encodeproject.org/files/ENCFF855NJI/@@download/ENCFF855NJI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF061CHA bigBed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF578KAH 13600480 ENCODE Processing Pipeline 83fc56870e61af1c51f6bd6eaac997f0 https://www.encodeproject.org/files/ENCFF061CHA/@@download/ENCFF061CHA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF419JTV bigBed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF855NJI 13249697 ENCODE Processing Pipeline 4566e20804767e13b4302abdc29f755f https://www.encodeproject.org/files/ENCFF419JTV/@@download/ENCFF419JTV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF346NAY bigBed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF890TVV 13609991 ENCODE Processing Pipeline ef32527f91a46db4b61756ee7b68d804 https://www.encodeproject.org/files/ENCFF346NAY/@@download/ENCFF346NAY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF890TVV bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF112XEQ, ENCFF685DBQ 5932661 ENCODE Processing Pipeline 2a45a7265c3fc00dc0631fd608a40858 https://www.encodeproject.org/files/ENCFF890TVV/@@download/ENCFF890TVV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000QYL bam alignments ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYZ 1939248667 Richard Myers, HAIB 51e6ac9a3fe28cc3d35859fbeef5fe48 https://www.encodeproject.org/files/ENCFF000QYL/@@download/ENCFF000QYL.bam hg19 released biological replicates with identical biosample ENCFF000QYM bigBed broadPeak peaks ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPH 1448281 Richard Myers, HAIB 302a2e4885f4ae3ea6483f6acfaab26f https://www.encodeproject.org/files/ENCFF000QYM/@@download/ENCFF000QYM.bigBed hg19 released biological replicates with identical biosample ENCFF000QYN bigBed broadPeak peaks ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPI 1273514 Richard Myers, HAIB 106e8ff637b159c657830a17e324b8b4 https://www.encodeproject.org/files/ENCFF000QYN/@@download/ENCFF000QYN.bigBed hg19 released biological replicates with identical biosample ENCFF000QYO bam alignments ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZA 1903231171 Richard Myers, HAIB 9d0dbf1078536fe49e2069e8142c803e https://www.encodeproject.org/files/ENCFF000QYO/@@download/ENCFF000QYO.bam hg19 released biological replicates with identical biosample ENCFF000QYQ bigWig raw signal ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 260071321 Richard Myers, HAIB 4a4a8f1c94a0dc81699e85a749e64051 https://www.encodeproject.org/files/ENCFF000QYQ/@@download/ENCFF000QYQ.bigWig hg19 released missing derived_from, biological replicates with identical biosample ENCFF000QYR bigWig raw signal ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 235338869 Richard Myers, HAIB db72d5748407e6a42de0d1dc2bf31aab https://www.encodeproject.org/files/ENCFF000QYR/@@download/ENCFF000QYR.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000QYZ fastq reads ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 2083801650 Richard Myers, HAIB dc887dc6c84bef7c539d58187fa38fbe https://www.encodeproject.org/files/ENCFF000QYZ/@@download/ENCFF000QYZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCK/ released biological replicates with identical biosample ENCFF000QZA fastq reads ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1950719770 Richard Myers, HAIB 863dc3126c7d57c84e0aeea317a977dc https://www.encodeproject.org/files/ENCFF000QZA/@@download/ENCFF000QZA.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF001UPH bed broadPeak peaks ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 1 920007 Richard Myers, HAIB cfa77a53c8c3b5fea27e47ec49e2e857 https://www.encodeproject.org/files/ENCFF001UPH/@@download/ENCFF001UPH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPI bed broadPeak peaks ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 1 745336 Richard Myers, HAIB 734b82c5ca75b36a545cbdb633c8590a https://www.encodeproject.org/files/ENCFF001UPI/@@download/ENCFF001UPI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RAX bam alignments ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RBK 1703644977 Richard Myers, HAIB c1641975f76801d22d7eb9d0d7620194 https://www.encodeproject.org/files/ENCFF000RAX/@@download/ENCFF000RAX.bam hg19 released biological replicates with identical biosample ENCFF000RAY bigBed broadPeak peaks ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UPX 1292708 Richard Myers, HAIB 228f1e6bf3dca7c88fe46b4b9129ed84 https://www.encodeproject.org/files/ENCFF000RAY/@@download/ENCFF000RAY.bigBed hg19 released biological replicates with identical biosample ENCFF000RAZ bigBed broadPeak peaks ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UPY 1085482 Richard Myers, HAIB fe2cee14f8ebd9915bdd0554c72adb46 https://www.encodeproject.org/files/ENCFF000RAZ/@@download/ENCFF000RAZ.bigBed hg19 released biological replicates with identical biosample ENCFF000RBA bam alignments ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RBO 2281535706 Richard Myers, HAIB 63554b2e226ed12b6bd3e947e04631e6 https://www.encodeproject.org/files/ENCFF000RBA/@@download/ENCFF000RBA.bam hg19 released biological replicates with identical biosample ENCFF000RBB bigWig raw signal ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 217557046 Richard Myers, HAIB 6e1a91dc71156e6740ea0da6d47d3b70 https://www.encodeproject.org/files/ENCFF000RBB/@@download/ENCFF000RBB.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RBD bigWig raw signal ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 272958318 Richard Myers, HAIB 5c596cfd160bcabcb0c19a8e72a697f5 https://www.encodeproject.org/files/ENCFF000RBD/@@download/ENCFF000RBD.bigWig hg19 released biological replicates with identical biosample, missing derived_from ENCFF000RBK fastq reads ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1807600890 Richard Myers, HAIB fe57864e4ca195bd10ecb3389bf5737d https://www.encodeproject.org/files/ENCFF000RBK/@@download/ENCFF000RBK.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCM/ released biological replicates with identical biosample ENCFF000RBO fastq reads ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 2388727946 Richard Myers, HAIB 78237eef6d7db756cf71efa723f976a5 https://www.encodeproject.org/files/ENCFF000RBO/@@download/ENCFF000RBO.fastq.gz Illumina HiSeq 2000 /files/ENCFF000RCT/ released biological replicates with identical biosample ENCFF001UPX bed broadPeak peaks ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 1 755176 Richard Myers, HAIB e22810c5ba39a78789f5cd4072334ffc https://www.encodeproject.org/files/ENCFF001UPX/@@download/ENCFF001UPX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF001UPY bed broadPeak peaks ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 1 574356 Richard Myers, HAIB 1a38fa0dde39c4481a1ab2e357a868f4 https://www.encodeproject.org/files/ENCFF001UPY/@@download/ENCFF001UPY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF000CCN bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CCY 610667355 Bradley Bernstein, Broad 5204e3cb624c03f9c1b7489e2707c7d9 https://www.encodeproject.org/files/ENCFF000CCN/@@download/ENCFF000CCN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF000CCO bigBed broadPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE ENCFF001TAH 1562847 Bradley Bernstein, Broad 5bb9c003e9adf1f6f8168b1211c610e9 https://www.encodeproject.org/files/ENCFF000CCO/@@download/ENCFF000CCO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF000CCR bigWig signal ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 403765322 Bradley Bernstein, Broad e31cda600cb135f2848bfd7fa5acd93e https://www.encodeproject.org/files/ENCFF000CCR/@@download/ENCFF000CCR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from insufficient read depth ENCFF000CCS bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF000CCZ 1374936359 Bradley Bernstein, Broad 55e02a8fab67a9ba5a88d3ef7011bd20 https://www.encodeproject.org/files/ENCFF000CCS/@@download/ENCFF000CCS.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF000CCY fastq reads ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 763098692 Bradley Bernstein, Broad f5dd0716349a70ed4e784e687868f155 https://www.encodeproject.org/files/ENCFF000CCY/@@download/ENCFF000CCY.fastq.gz Illumina HiSeq 2000 /files/ENCFF000CCW/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF000CCZ fastq reads ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 1 36 single-ended 1359625141 Bradley Bernstein, Broad e2f4669d77d9f2a4d24af075a25250fa https://www.encodeproject.org/files/ENCFF000CCZ/@@download/ENCFF000CCZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000CCQ/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001TAH bed broadPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 757592 Bradley Bernstein, Broad 4ddb63561e3ab3295c732bff6dcca538 https://www.encodeproject.org/files/ENCFF001TAH/@@download/ENCFF001TAH.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from insufficient read depth ENCFF210URG bam unfiltered alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCY, ENCFF643CGH 928919846 ENCODE Processing Pipeline 973287dc19d3bd5c5f1cdf5c6b7ab088 https://www.encodeproject.org/files/ENCFF210URG/@@download/ENCFF210URG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF746KIU bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCY, ENCFF643CGH 297455061 ENCODE Processing Pipeline 1821c7d555b0eedb5e1e3875f7592423 https://www.encodeproject.org/files/ENCFF746KIU/@@download/ENCFF746KIU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF977ATV bam unfiltered alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000CCZ, ENCFF643CGH 1698405185 ENCODE Processing Pipeline ba8ee9e932131676fb637b4994c3849b https://www.encodeproject.org/files/ENCFF977ATV/@@download/ENCFF977ATV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF765PTU bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000CCZ, ENCFF643CGH 796478278 ENCODE Processing Pipeline 41d96a06f6309181ce7d94b25d8095bb https://www.encodeproject.org/files/ENCFF765PTU/@@download/ENCFF765PTU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF483NLM bam unfiltered alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCY, ENCFF807MUK 925565154 ENCODE Processing Pipeline 5ed00e6fc55865603c5850ecf2659208 https://www.encodeproject.org/files/ENCFF483NLM/@@download/ENCFF483NLM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF853XVP bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCY, ENCFF807MUK 297615649 ENCODE Processing Pipeline 144749855f5713387f3c22d58a048c4f https://www.encodeproject.org/files/ENCFF853XVP/@@download/ENCFF853XVP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF576HMR bam unfiltered alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000CCZ, ENCFF807MUK 1692260084 ENCODE Processing Pipeline fc9c7e6b639ddf844bf30e2e375dea64 https://www.encodeproject.org/files/ENCFF576HMR/@@download/ENCFF576HMR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF442UIU bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000CCZ, ENCFF807MUK 796916789 ENCODE Processing Pipeline 5521fb8a6c8cd85c01a35503c6b46133 https://www.encodeproject.org/files/ENCFF442UIU/@@download/ENCFF442UIU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF917SGM bigWig fold change over control ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF075YNC, ENCFF746KIU, ENCFF865NTT 195064810 ENCODE Processing Pipeline c1d59638b588268bac8889c2ac6f3b4c https://www.encodeproject.org/files/ENCFF917SGM/@@download/ENCFF917SGM.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF105PWR bigWig fold change over control ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF075YNC, ENCFF765PTU, ENCFF865NTT 496502810 ENCODE Processing Pipeline 7dbcc87897ec97aab986771d4d44f257 https://www.encodeproject.org/files/ENCFF105PWR/@@download/ENCFF105PWR.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF225SYV bigBed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF409FXR 13455246 ENCODE Processing Pipeline 1ab04e7d24d834e8ae04bbcff0d7344a https://www.encodeproject.org/files/ENCFF225SYV/@@download/ENCFF225SYV.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF971DUD bigWig signal p-value ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF075YNC, ENCFF746KIU, ENCFF865NTT 470950054 ENCODE Processing Pipeline 89fe46174c9dafb38221c23ff490b96a https://www.encodeproject.org/files/ENCFF971DUD/@@download/ENCFF971DUD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF324TCQ bigWig signal p-value ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF075YNC, ENCFF765PTU, ENCFF865NTT 533853598 ENCODE Processing Pipeline d79160b40fce8552b3a182ed07f0d138 https://www.encodeproject.org/files/ENCFF324TCQ/@@download/ENCFF324TCQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF527XMC bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF873NGI 1355153 ENCODE Processing Pipeline 66b05795eb60a214121fa197017acb06 https://www.encodeproject.org/files/ENCFF527XMC/@@download/ENCFF527XMC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF167VRL bigWig signal p-value ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF075YNC, ENCFF746KIU, ENCFF765PTU, ENCFF865NTT 641895406 ENCODE Processing Pipeline 066278cffc3f7091e0353eef964ac0c6 https://www.encodeproject.org/files/ENCFF167VRL/@@download/ENCFF167VRL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF545USN bigBed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF385FXV 5113279 ENCODE Processing Pipeline 5d1e6951eae02c4172df8ceb41e19b42 https://www.encodeproject.org/files/ENCFF545USN/@@download/ENCFF545USN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF028NYY bigBed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF179QLF 13488226 ENCODE Processing Pipeline ebbdf20c07f0ef2438ccde901cb6ec03 https://www.encodeproject.org/files/ENCFF028NYY/@@download/ENCFF028NYY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF879POA bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF300XXC 1395944 ENCODE Processing Pipeline 1b272ee936cbd556f8afe0ce36de2e19 https://www.encodeproject.org/files/ENCFF879POA/@@download/ENCFF879POA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF974NBA bigWig fold change over control ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF075YNC, ENCFF746KIU, ENCFF765PTU, ENCFF865NTT 606661800 ENCODE Processing Pipeline 3ad6b519f8d874bc072749f2b0ee9d1d https://www.encodeproject.org/files/ENCFF974NBA/@@download/ENCFF974NBA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF385FXV bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF075YNC, ENCFF746KIU, ENCFF865NTT 2538198 ENCODE Processing Pipeline 506e5584e0bd676a0e1e18d05eb58156 https://www.encodeproject.org/files/ENCFF385FXV/@@download/ENCFF385FXV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF409FXR bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF075YNC, ENCFF765PTU, ENCFF865NTT 5652730 ENCODE Processing Pipeline 36907687741235c85ca54dd2677db440 https://www.encodeproject.org/files/ENCFF409FXR/@@download/ENCFF409FXR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF179QLF bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF075YNC, ENCFF746KIU, ENCFF765PTU, ENCFF865NTT 5687576 ENCODE Processing Pipeline 21d7da3a5b95a910f9cf59d9d69aaf36 https://www.encodeproject.org/files/ENCFF179QLF/@@download/ENCFF179QLF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF873NGI bed narrowPeak conservative idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF179QLF, ENCFF385FXV, ENCFF409FXR, ENCFF419RSJ 682402 ENCODE Processing Pipeline ee60e560def610cd66baa447e15c5a41 https://www.encodeproject.org/files/ENCFF873NGI/@@download/ENCFF873NGI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF300XXC bed narrowPeak optimal idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF179QLF, ENCFF385FXV, ENCFF409FXR, ENCFF419RSJ 694416 ENCODE Processing Pipeline 68d359de96cf841f4543cb9d74d2ef73 https://www.encodeproject.org/files/ENCFF300XXC/@@download/ENCFF300XXC.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF314QTU bigWig fold change over control ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS 496692561 ENCODE Processing Pipeline 15a80910f182528bb1fd18995129d8e9 https://www.encodeproject.org/files/ENCFF314QTU/@@download/ENCFF314QTU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF446PEN bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 5726924 ENCODE Processing Pipeline 186a79d3ab86c69cde946fc66ebb1e51 https://www.encodeproject.org/files/ENCFF446PEN/@@download/ENCFF446PEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF304TID bigBed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF097DFJ 6454363 ENCODE Processing Pipeline e4e5dbd4a555d2f4ca4b7a336b879705 https://www.encodeproject.org/files/ENCFF304TID/@@download/ENCFF304TID.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF097DFJ bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 2633014 ENCODE Processing Pipeline ac010eb0b01e37f4288fdbe332b30fa6 https://www.encodeproject.org/files/ENCFF097DFJ/@@download/ENCFF097DFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF586SAN bigWig signal p-value ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS 535963966 ENCODE Processing Pipeline d8c12724f604dd02351c3e0542a1db2f https://www.encodeproject.org/files/ENCFF586SAN/@@download/ENCFF586SAN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF971FFO bigWig signal p-value ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 597622199 ENCODE Processing Pipeline 92d21b8cbad14c2d86fa4981ed90fb70 https://www.encodeproject.org/files/ENCFF971FFO/@@download/ENCFF971FFO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF114WQR bigWig fold change over control ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 603056391 ENCODE Processing Pipeline 1b2005df029259f2e804b40cbbc9ce58 https://www.encodeproject.org/files/ENCFF114WQR/@@download/ENCFF114WQR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF920STO bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS 5595559 ENCODE Processing Pipeline aa22a83230d12c3c1501bbe6b932b482 https://www.encodeproject.org/files/ENCFF920STO/@@download/ENCFF920STO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF258VBV bigBed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF446PEN 13532009 ENCODE Processing Pipeline a6eb3676cdfb8f599a720234c8b5c27a https://www.encodeproject.org/files/ENCFF258VBV/@@download/ENCFF258VBV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF920JJP bed narrowPeak conservative idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF097DFJ, ENCFF446PEN, ENCFF920STO 685912 ENCODE Processing Pipeline 7e3354e6f84df1c5835d486de8be7b53 https://www.encodeproject.org/files/ENCFF920JJP/@@download/ENCFF920JJP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF423PKI bigWig signal p-value ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 457777198 ENCODE Processing Pipeline aba8495b56857424308fb0f82028df06 https://www.encodeproject.org/files/ENCFF423PKI/@@download/ENCFF423PKI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF457PGJ bigWig fold change over control ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 195575405 ENCODE Processing Pipeline 5b685b4c57edb7a491ffd86d0a697247 https://www.encodeproject.org/files/ENCFF457PGJ/@@download/ENCFF457PGJ.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF213XMK bigBed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF920STO 13373546 ENCODE Processing Pipeline 400fe6adcd136537fb0b5ffe94e4a2c4 https://www.encodeproject.org/files/ENCFF213XMK/@@download/ENCFF213XMK.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF611TFY bigBed narrowPeak conservative idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF920JJP 1363163 ENCODE Processing Pipeline 5d8641fddcf98bfdf740f02ab9281821 https://www.encodeproject.org/files/ENCFF611TFY/@@download/ENCFF611TFY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF437LHG bed narrowPeak optimal idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF001TDO, ENCFF097DFJ, ENCFF446PEN, ENCFF920STO 692739 ENCODE Processing Pipeline d352e31174798d828b982e6429bbb48e https://www.encodeproject.org/files/ENCFF437LHG/@@download/ENCFF437LHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF218RCT bigBed narrowPeak optimal idr thresholded peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF437LHG 1395496 ENCODE Processing Pipeline aa8b8732b048ae86b51fc1e810731c2e https://www.encodeproject.org/files/ENCFF218RCT/@@download/ENCFF218RCT.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF000AYZ bam alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AZO 753862656 Bradley Bernstein, Broad 295d91c6c21db37703a019cf526c274b https://www.encodeproject.org/files/ENCFF000AYZ/@@download/ENCFF000AYZ.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AZA bigBed broadPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001SVK 961110 Bradley Bernstein, Broad ba1806811d3c52b28d5dd932127e0f56 https://www.encodeproject.org/files/ENCFF000AZA/@@download/ENCFF000AZA.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AZC bigWig signal ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AYZ 287376869 Bradley Bernstein, Broad 04797e107fdc55f7f64ae7ab40b1d3d2 https://www.encodeproject.org/files/ENCFF000AZC/@@download/ENCFF000AZC.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000AZO fastq reads ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 1 36 single-ended 846194302 Bradley Bernstein, Broad 9c450e1117f6d8ecae04d464793313f0 https://www.encodeproject.org/files/ENCFF000AZO/@@download/ENCFF000AZO.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF001SVK bed broadPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000AYZ 508076 Bradley Bernstein, Broad 3efd2d0723fbeda29cfefe42407a5de2 https://www.encodeproject.org/files/ENCFF001SVK/@@download/ENCFF001SVK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF832OFG bam alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZO, ENCFF807MUK 551782657 ENCODE Processing Pipeline 6de364f5169abf11acef11b8c4a0d699 https://www.encodeproject.org/files/ENCFF832OFG/@@download/ENCFF832OFG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF686FEO bam alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZO, ENCFF643CGH 551459206 ENCODE Processing Pipeline de8d7a626ba2013767c72aef465383de https://www.encodeproject.org/files/ENCFF686FEO/@@download/ENCFF686FEO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF515EZC bam unfiltered alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZO, ENCFF807MUK 1095705402 ENCODE Processing Pipeline 3446c6e7a7fcf126112926f891baa97b https://www.encodeproject.org/files/ENCFF515EZC/@@download/ENCFF515EZC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF248LPF bam unfiltered alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZO, ENCFF643CGH 1100872012 ENCODE Processing Pipeline b76a894ceb11fcb6b231d0653e811691 https://www.encodeproject.org/files/ENCFF248LPF/@@download/ENCFF248LPF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF480FHG bed narrowPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF727XHW, ENCFF832OFG 4055087 ENCODE Processing Pipeline 9b475cd500f3586135d391fc2a278313 https://www.encodeproject.org/files/ENCFF480FHG/@@download/ENCFF480FHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF748TQP bigBed narrowPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF480FHG 10494417 ENCODE Processing Pipeline 8140000eab8c612b4e084874551c2d2d https://www.encodeproject.org/files/ENCFF748TQP/@@download/ENCFF748TQP.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF456JEW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001TDO, ENCFF480FHG 23140 ENCODE Processing Pipeline 1b169571840f39a172b13a3fa8f3cf40 https://www.encodeproject.org/files/ENCFF456JEW/@@download/ENCFF456JEW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF621LDY bigWig signal p-value ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF686FEO 450819403 ENCODE Processing Pipeline 1dcec1d0a80121d1bd8c7dfebdd8e031 https://www.encodeproject.org/files/ENCFF621LDY/@@download/ENCFF621LDY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF489CQP bigWig fold change over control ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF686FEO 263957920 ENCODE Processing Pipeline 66562621374fe2582408cec95ac661c2 https://www.encodeproject.org/files/ENCFF489CQP/@@download/ENCFF489CQP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF633ELK bed narrowPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF064DDT, ENCFF686FEO 4068290 ENCODE Processing Pipeline 12a4faf21a579a07882e2cc686cce37c https://www.encodeproject.org/files/ENCFF633ELK/@@download/ENCFF633ELK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF319USL bigBed narrowPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF633ELK 10526073 ENCODE Processing Pipeline b2c0e870b51d160ca14b7dd996d399c0 https://www.encodeproject.org/files/ENCFF319USL/@@download/ENCFF319USL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF483HNU bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF419RSJ, ENCFF633ELK 23373 ENCODE Processing Pipeline 520d0a4ffb188f1a0c628b4162aac9b1 https://www.encodeproject.org/files/ENCFF483HNU/@@download/ENCFF483HNU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF226ZRP bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF483HNU 76008 ENCODE Processing Pipeline 5e4eb5dd2d4d0ab4b8454949c967453b https://www.encodeproject.org/files/ENCFF226ZRP/@@download/ENCFF226ZRP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF936JCA bigWig signal p-value ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF727XHW, ENCFF832OFG 548636976 ENCODE Processing Pipeline f02b1b0f025bc8863f0042e9eed4d616 https://www.encodeproject.org/files/ENCFF936JCA/@@download/ENCFF936JCA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF248IRF bigWig fold change over control ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF727XHW, ENCFF832OFG 265889656 ENCODE Processing Pipeline af96b1d5379c0d5fd3385b1055faa9ae https://www.encodeproject.org/files/ENCFF248IRF/@@download/ENCFF248IRF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF714HDF bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF456JEW 75060 ENCODE Processing Pipeline a4321489847eeaa3d6771f57d1657593 https://www.encodeproject.org/files/ENCFF714HDF/@@download/ENCFF714HDF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000XGK bam alignments ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XHI 1161848742 Michael Snyder, Stanford 68fe97ec8eb5005f4b686bbb17e21565 https://www.encodeproject.org/files/ENCFF000XGK/@@download/ENCFF000XGK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XGL bam alignments ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XHO 932964777 Michael Snyder, Stanford 6b39ba1deab79f00b581a63ee35f1305 https://www.encodeproject.org/files/ENCFF000XGL/@@download/ENCFF000XGL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XGM bigBed narrowPeak peaks ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VIQ 935442 Michael Snyder, Stanford c1d434d12f2a06279643c1448ac414d4 https://www.encodeproject.org/files/ENCFF000XGM/@@download/ENCFF000XGM.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XGN bigWig signal ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 424482495 Michael Snyder, Stanford 6bbdfb80274b77846b5ec0f3b954da45 https://www.encodeproject.org/files/ENCFF000XGN/@@download/ENCFF000XGN.bigWig hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000XHI fastq reads ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 1 27 single-ended 869543018 Michael Snyder, Stanford 9d15df735e213d03a3fb5dc3f3cb5c6d https://www.encodeproject.org/files/ENCFF000XHI/@@download/ENCFF000XHI.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released biological replicates with identical biosample insufficient read length ENCFF000XHO fastq reads ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 1 27 single-ended 709095240 Michael Snyder, Stanford 88d81ed2249516e01048c9604a798f50 https://www.encodeproject.org/files/ENCFF000XHO/@@download/ENCFF000XHO.fastq.gz Illumina Genome Analyzer /files/ENCFF000XKW/ released biological replicates with identical biosample insufficient read length ENCFF001VIQ bed narrowPeak peaks ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 434296 Michael Snyder, Stanford 18b6938b352b25d6f313a8256db8f0f2 https://www.encodeproject.org/files/ENCFF001VIQ/@@download/ENCFF001VIQ.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF002CSP bed narrowPeak optimal idr thresholded peaks ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 750595 ENCODE Consortium Analysis Working Group 8382b1d2abe95d66c1230cf762e7e99e https://www.encodeproject.org/files/ENCFF002CSP/@@download/ENCFF002CSP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF549UBA bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CSP 1723253 ENCODE Consortium 99434c3aa822616649652947424af1d7 https://www.encodeproject.org/files/ENCFF549UBA/@@download/ENCFF549UBA.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF873BBZ fastq reads ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 1 ENCFF670ONL 2636679059 Michael Snyder, Stanford 909304ca071b1da282fd06ba03844355 SRA:SRR6214228 https://www.encodeproject.org/files/ENCFF873BBZ/@@download/ENCFF873BBZ.fastq.gz Illumina HiSeq 4000 /files/ENCFF196TAE/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF670ONL fastq reads ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 1 100 paired-ended 2 ENCFF873BBZ 2805968488 Michael Snyder, Stanford d78995283f31c8bfbba20d226c3b11b1 SRA:SRR6214228 https://www.encodeproject.org/files/ENCFF670ONL/@@download/ENCFF670ONL.fastq.gz Illumina HiSeq 4000 /files/ENCFF270OHP/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF914XOX bam unfiltered alignments ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF670ONL, ENCFF873BBZ 4753912215 ENCODE Processing Pipeline fd792f20eed31184dbe284561a245528 https://www.encodeproject.org/files/ENCFF914XOX/@@download/ENCFF914XOX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF642ALB bam alignments ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF670ONL, ENCFF873BBZ 3287200902 ENCODE Processing Pipeline 738d59640cd3481296b317a7266adcee https://www.encodeproject.org/files/ENCFF642ALB/@@download/ENCFF642ALB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF211MEB bam unfiltered alignments ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF670ONL, ENCFF807MUK, ENCFF873BBZ 4754068283 ENCODE Processing Pipeline 557b0dad025d0b3a1e24a6c5ce2b766f https://www.encodeproject.org/files/ENCFF211MEB/@@download/ENCFF211MEB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF029BUR bam alignments ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF670ONL, ENCFF807MUK, ENCFF873BBZ 3282857829 ENCODE Processing Pipeline bebf006b25135e4e16e870943e3fd44f https://www.encodeproject.org/files/ENCFF029BUR/@@download/ENCFF029BUR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF985RWY bigWig signal p-value ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF029BUR, ENCFF576YJV 1192028115 ENCODE Processing Pipeline 4b9d5b897a9f6ee67a7d6b89bab05d2f https://www.encodeproject.org/files/ENCFF985RWY/@@download/ENCFF985RWY.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF212PTB bigWig fold change over control ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF029BUR, ENCFF576YJV 1227693197 ENCODE Processing Pipeline a50e9783e0d4df5854ad3d430a3de87b https://www.encodeproject.org/files/ENCFF212PTB/@@download/ENCFF212PTB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF649WCV bed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF029BUR, ENCFF576YJV 5941629 ENCODE Processing Pipeline 030c1c00e909666d29987d7f17faa26c https://www.encodeproject.org/files/ENCFF649WCV/@@download/ENCFF649WCV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF885KKQ bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF001TDO, ENCFF649WCV 569241 ENCODE Processing Pipeline 11947c1a129809b0bdcc7eb665ca3b29 https://www.encodeproject.org/files/ENCFF885KKQ/@@download/ENCFF885KKQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF955AIM bigWig signal p-value ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF642ALB, ENCFF820JHF 1307369790 ENCODE Processing Pipeline a2bae37a81ecaab6b98bcfb4f0d36768 https://www.encodeproject.org/files/ENCFF955AIM/@@download/ENCFF955AIM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF183RHL bigBed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF649WCV 11772456 ENCODE Processing Pipeline 2d23ebca90acb6b4bb705b1b8d75997f https://www.encodeproject.org/files/ENCFF183RHL/@@download/ENCFF183RHL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF510ZNT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF885KKQ 1068774 ENCODE Processing Pipeline f0cfa34a35424fae187f91e17c10862c https://www.encodeproject.org/files/ENCFF510ZNT/@@download/ENCFF510ZNT.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF559LDF bed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF642ALB, ENCFF820JHF 5952926 ENCODE Processing Pipeline f9e699ad52d89b1b6f44376cb823e680 https://www.encodeproject.org/files/ENCFF559LDF/@@download/ENCFF559LDF.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF644JKD bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF419RSJ, ENCFF559LDF 575553 ENCODE Processing Pipeline 64941dd301b5402d951660f2f404bb49 https://www.encodeproject.org/files/ENCFF644JKD/@@download/ENCFF644JKD.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF343ULH bigWig fold change over control ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF642ALB, ENCFF820JHF 1221759684 ENCODE Processing Pipeline fb1e2f8c03896a884a66f58ccc045f88 https://www.encodeproject.org/files/ENCFF343ULH/@@download/ENCFF343ULH.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF893YLQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF644JKD 1081518 ENCODE Processing Pipeline 6b177c691a53f9222c67edf48c0633d0 https://www.encodeproject.org/files/ENCFF893YLQ/@@download/ENCFF893YLQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF161VLH bigBed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF559LDF 11798244 ENCODE Processing Pipeline 085f1c22d29fa9bc701159fa08b024c4 https://www.encodeproject.org/files/ENCFF161VLH/@@download/ENCFF161VLH.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000WYI bigBed narrowPeak peaks ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VHO 699157 Peggy Farnham, USC 97315cdabac115d5d0b6df7f48aad95b https://www.encodeproject.org/files/ENCFF000WYI/@@download/ENCFF000WYI.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000WYJ bam alignments ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WYK 468031017 Peggy Farnham, USC 40ba2a17e70a5c0eac9753d6b6ebf5b9 https://www.encodeproject.org/files/ENCFF000WYJ/@@download/ENCFF000WYJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000WYK fastq reads ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1134141834 Peggy Farnham, USC fce0a1a9e629d9b70db78421cd7aac84 https://www.encodeproject.org/files/ENCFF000WYK/@@download/ENCFF000WYK.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000WXY/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000WYM bam alignments ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WYN 497960554 Peggy Farnham, USC 7c900e05eb4b250d04f65d834b993120 https://www.encodeproject.org/files/ENCFF000WYM/@@download/ENCFF000WYM.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000WYN fastq reads ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 962148763 Peggy Farnham, USC a5ac0f3291a449599bcccd39d547db18 https://www.encodeproject.org/files/ENCFF000WYN/@@download/ENCFF000WYN.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000WXY/ released low read length, inconsistent control read length, inconsistent platforms biological replicates with identical biosample ENCFF000WYP bigWig signal ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 337798335 Peggy Farnham, USC 692a81d59ba768e7babcdaa807f44dc9 https://www.encodeproject.org/files/ENCFF000WYP/@@download/ENCFF000WYP.bigWig hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001VHO bed narrowPeak peaks ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 276128 Peggy Farnham, USC 4e47e166a8954e0762ccf68e4e47ab43 https://www.encodeproject.org/files/ENCFF001VHO/@@download/ENCFF001VHO.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF002CRP bed narrowPeak optimal idr thresholded peaks ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 227110 ENCODE Consortium Analysis Working Group bb39e8c267d6e62ca145de79bc2057f0 https://www.encodeproject.org/files/ENCFF002CRP/@@download/ENCFF002CRP.bed.gz hg19 released low read length, inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF130WQM bigBed narrowPeak optimal idr thresholded peaks ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CRP 660275 ENCODE Consortium ffa350506392237d557c628bce81ad76 https://www.encodeproject.org/files/ENCFF130WQM/@@download/ENCFF130WQM.bigBed hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001HQY bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRL 356584603 John Stamatoyannopoulos, UW c676d1b5f42538b83e2c9df59199c614 https://www.encodeproject.org/files/ENCFF001HQY/@@download/ENCFF001HQY.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRB bigBed broadPeak hotspots ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XSB 2559221 John Stamatoyannopoulos, UW 034b17d0a6afcf44d418494ab8f3ac95 https://www.encodeproject.org/files/ENCFF001HRB/@@download/ENCFF001HRB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRC bigBed broadPeak hotspots ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSC 2751005 John Stamatoyannopoulos, UW ebd22bffa46bfe046bfe140ae3a93766 https://www.encodeproject.org/files/ENCFF001HRC/@@download/ENCFF001HRC.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRD bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XSD 1109989 John Stamatoyannopoulos, UW 5b2e9fb2e7699a992613f7cf376fd04a https://www.encodeproject.org/files/ENCFF001HRD/@@download/ENCFF001HRD.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRE bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XSE 1100001 John Stamatoyannopoulos, UW 5cfad8a379dcbd1a8129127d8b00df85 https://www.encodeproject.org/files/ENCFF001HRE/@@download/ENCFF001HRE.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRF bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRM 610695108 John Stamatoyannopoulos, UW 0d49e62b3be96c0b2a7964da6ecdba12 https://www.encodeproject.org/files/ENCFF001HRF/@@download/ENCFF001HRF.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRG bigWig raw signal ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQY 60566776 John Stamatoyannopoulos, UW 69b181322f3b2099f953b39e38dfa465 https://www.encodeproject.org/files/ENCFF001HRG/@@download/ENCFF001HRG.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRH bigWig raw signal ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRF 71068397 John Stamatoyannopoulos, UW ca58b103c977cbd51b1b42853e626c77 https://www.encodeproject.org/files/ENCFF001HRH/@@download/ENCFF001HRH.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRL fastq reads ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 541368055 John Stamatoyannopoulos, UW 64bef3c4ee501bc524cdfcbc0b3dd7d6 https://www.encodeproject.org/files/ENCFF001HRL/@@download/ENCFF001HRL.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HRU/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HRM fastq reads ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 1222833775 John Stamatoyannopoulos, UW 6dfd704fec3365a017487af3b7380d6a https://www.encodeproject.org/files/ENCFF001HRM/@@download/ENCFF001HRM.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HRU/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSB bed broadPeak hotspots ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQY 1745035 John Stamatoyannopoulos, UW d9ad05966700062df352582389b153e6 https://www.encodeproject.org/files/ENCFF001XSB/@@download/ENCFF001XSB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSC bed broadPeak hotspots ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRF 1868271 John Stamatoyannopoulos, UW 8d47b362c28de5955c55662d7257e4ed https://www.encodeproject.org/files/ENCFF001XSC/@@download/ENCFF001XSC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSD bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQY 782666 John Stamatoyannopoulos, UW fd1021882893908aa292899d6bc06f46 https://www.encodeproject.org/files/ENCFF001XSD/@@download/ENCFF001XSD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XSE bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRF 776564 John Stamatoyannopoulos, UW 0c1112e2abc6aefb6a2c453d39ab8034 https://www.encodeproject.org/files/ENCFF001XSE/@@download/ENCFF001XSE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF002DDF bed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HQY, ENCFF001HRF 826485 ENCODE Consortium Analysis Working Group 239dcdae7b518c7180b066742c0cbc90 https://www.encodeproject.org/files/ENCFF002DDF/@@download/ENCFF002DDF.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF501FUB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDF 1826600 ENCODE Consortium 98048f1e71070a701bd12b93d3052421 https://www.encodeproject.org/files/ENCFF501FUB/@@download/ENCFF501FUB.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF463DJV bam unfiltered alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRL, ENCFF643CGH 557758487 ENCODE Processing Pipeline 3fca91a6de12d3cce08c35c7d684c809 https://www.encodeproject.org/files/ENCFF463DJV/@@download/ENCFF463DJV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF874XSI bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRL, ENCFF643CGH 239292813 ENCODE Processing Pipeline a63497691fe84975f4d1c518a7bdeb25 https://www.encodeproject.org/files/ENCFF874XSI/@@download/ENCFF874XSI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF688ZXI bam unfiltered alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRM, ENCFF643CGH 1174662655 ENCODE Processing Pipeline 778b141b7031d5353c270b90468cad76 https://www.encodeproject.org/files/ENCFF688ZXI/@@download/ENCFF688ZXI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF464SZY bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRM, ENCFF643CGH 260220547 ENCODE Processing Pipeline 89363f24e8fedd810fe4e5615d9d0f6b https://www.encodeproject.org/files/ENCFF464SZY/@@download/ENCFF464SZY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF535GTC bam unfiltered alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRM, ENCFF807MUK 1173044872 ENCODE Processing Pipeline a1d6921ecc19139eb4490f137f648fbb https://www.encodeproject.org/files/ENCFF535GTC/@@download/ENCFF535GTC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF022FKL bam unfiltered alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRL, ENCFF807MUK 556990212 ENCODE Processing Pipeline 15de3701996a5d7315a851601faa7f48 https://www.encodeproject.org/files/ENCFF022FKL/@@download/ENCFF022FKL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF370MLP bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRL, ENCFF807MUK 239407256 ENCODE Processing Pipeline e119497625dbe2933829c586824e5c42 https://www.encodeproject.org/files/ENCFF370MLP/@@download/ENCFF370MLP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF007XGO bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRM, ENCFF807MUK 260336751 ENCODE Processing Pipeline 468235ecc5da33758968d427d4776973 https://www.encodeproject.org/files/ENCFF007XGO/@@download/ENCFF007XGO.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF936HRA bigWig signal p-value ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF115YWW, ENCFF874XSI 244495578 ENCODE Processing Pipeline e729114982a692ea36af0b809d9b6de8 https://www.encodeproject.org/files/ENCFF936HRA/@@download/ENCFF936HRA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF399RTB bigWig signal p-value ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF115YWW, ENCFF464SZY 249137661 ENCODE Processing Pipeline eaa32bab849a151326f9281fa7586a8a https://www.encodeproject.org/files/ENCFF399RTB/@@download/ENCFF399RTB.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF835DVR bigWig signal p-value ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF115YWW, ENCFF464SZY, ENCFF874XSI 298048611 ENCODE Processing Pipeline 0753d90abc05bce25b11695d559e193b https://www.encodeproject.org/files/ENCFF835DVR/@@download/ENCFF835DVR.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF303MLJ bigWig fold change over control ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF115YWW, ENCFF874XSI 96735042 ENCODE Processing Pipeline b0f47cbd428d2b41b10802cec5c238be https://www.encodeproject.org/files/ENCFF303MLJ/@@download/ENCFF303MLJ.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF583GYD bigWig fold change over control ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF115YWW, ENCFF464SZY 103284664 ENCODE Processing Pipeline 74ea80423665c1f0a17582bd5ad334e1 https://www.encodeproject.org/files/ENCFF583GYD/@@download/ENCFF583GYD.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF640EBA bigWig fold change over control ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF115YWW, ENCFF464SZY, ENCFF874XSI 186123224 ENCODE Processing Pipeline e2185b7fe661c66adbde95e1333686f0 https://www.encodeproject.org/files/ENCFF640EBA/@@download/ENCFF640EBA.bigWig GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF423CGM bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF115YWW, ENCFF874XSI 2213146 ENCODE Processing Pipeline b31ae70ee0ca673fcd4c71fa4c19983b https://www.encodeproject.org/files/ENCFF423CGM/@@download/ENCFF423CGM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF516DWM bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF115YWW, ENCFF464SZY 2576743 ENCODE Processing Pipeline 2f300c3d6487755c9a1d25732754bd36 https://www.encodeproject.org/files/ENCFF516DWM/@@download/ENCFF516DWM.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF715VSY bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF423CGM 4580200 ENCODE Processing Pipeline 10310d4e2b2a2a40a1974a20ed6b15d1 https://www.encodeproject.org/files/ENCFF715VSY/@@download/ENCFF715VSY.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF832CJL bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF115YWW, ENCFF464SZY, ENCFF874XSI 4133934 ENCODE Processing Pipeline 26972eb932d183a648badcaa72abe9e9 https://www.encodeproject.org/files/ENCFF832CJL/@@download/ENCFF832CJL.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF265LHB bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF516DWM 5238752 ENCODE Processing Pipeline 9e042325ffead56c2aa9fd65c8aa8f05 https://www.encodeproject.org/files/ENCFF265LHB/@@download/ENCFF265LHB.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF987JIP bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF832CJL 10020745 ENCODE Processing Pipeline 893d7276889eb16c180d5ed0cadebe3a https://www.encodeproject.org/files/ENCFF987JIP/@@download/ENCFF987JIP.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF010WHH bed narrowPeak conservative idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF423CGM, ENCFF516DWM, ENCFF832CJL 689278 ENCODE Processing Pipeline 7b5c53430643428d64b767a25b6ccaec https://www.encodeproject.org/files/ENCFF010WHH/@@download/ENCFF010WHH.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF674KUN bed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF419RSJ, ENCFF423CGM, ENCFF516DWM, ENCFF832CJL 706934 ENCODE Processing Pipeline 5c52fc1346475bd4a46d02e3667a0da1 https://www.encodeproject.org/files/ENCFF674KUN/@@download/ENCFF674KUN.bed.gz GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF776YMK bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF674KUN 1276463 ENCODE Processing Pipeline 82262c027274ceaa37f46bae375bc613 https://www.encodeproject.org/files/ENCFF776YMK/@@download/ENCFF776YMK.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF172YQJ bigBed narrowPeak conservative idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF010WHH 1254213 ENCODE Processing Pipeline 04ffd5a43842de8cb4bb9255ad992968 https://www.encodeproject.org/files/ENCFF172YQJ/@@download/ENCFF172YQJ.bigBed GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF583GIR bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007XGO, ENCFF213ZXO 2627094 ENCODE Processing Pipeline f78b903b92860b4aee482b081121c9f2 https://www.encodeproject.org/files/ENCFF583GIR/@@download/ENCFF583GIR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF575SCR bigWig signal p-value ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007XGO, ENCFF213ZXO 241387433 ENCODE Processing Pipeline e6f14fb427dd56bb29957441f392a329 https://www.encodeproject.org/files/ENCFF575SCR/@@download/ENCFF575SCR.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF146UDE bigWig fold change over control ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF213ZXO, ENCFF370MLP 98198449 ENCODE Processing Pipeline 9ee77b84bd782771f4bcef2db72c0b02 https://www.encodeproject.org/files/ENCFF146UDE/@@download/ENCFF146UDE.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF996ZZA bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF536XBD 10055150 ENCODE Processing Pipeline 017341171a7287cf37654778a0fb346c https://www.encodeproject.org/files/ENCFF996ZZA/@@download/ENCFF996ZZA.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF252LKT bigWig signal p-value ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF213ZXO, ENCFF370MLP 241892061 ENCODE Processing Pipeline 5feefce31fe409d2f4f7e0c7c93175d7 https://www.encodeproject.org/files/ENCFF252LKT/@@download/ENCFF252LKT.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF809AFV bigWig fold change over control ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF007XGO, ENCFF213ZXO, ENCFF370MLP 185760122 ENCODE Processing Pipeline 86c55d9b449cb4b7169ce30e1deff0b9 https://www.encodeproject.org/files/ENCFF809AFV/@@download/ENCFF809AFV.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF536XBD bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF007XGO, ENCFF213ZXO, ENCFF370MLP 4151416 ENCODE Processing Pipeline 6959d61a0cf052c0ccec1bde83e2763b https://www.encodeproject.org/files/ENCFF536XBD/@@download/ENCFF536XBD.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF168VBK bed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF444ZJW, ENCFF536XBD, ENCFF583GIR 708472 ENCODE Processing Pipeline d51a91608457f8beecc7c702e4116d49 https://www.encodeproject.org/files/ENCFF168VBK/@@download/ENCFF168VBK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF822YHQ bigWig signal p-value ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF007XGO, ENCFF213ZXO, ENCFF370MLP 335768304 ENCODE Processing Pipeline 0dc843ee736dc7d075bab4bec24b6acd https://www.encodeproject.org/files/ENCFF822YHQ/@@download/ENCFF822YHQ.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF745OLY bigWig fold change over control ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007XGO, ENCFF213ZXO 104000302 ENCODE Processing Pipeline 512e99008019652bdeedb96ef92faf23 https://www.encodeproject.org/files/ENCFF745OLY/@@download/ENCFF745OLY.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF444ZJW bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF213ZXO, ENCFF370MLP 2184424 ENCODE Processing Pipeline e1c31d15c3d4b204e1c3dbc6c6351d53 https://www.encodeproject.org/files/ENCFF444ZJW/@@download/ENCFF444ZJW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF549VVS bigBed narrowPeak optimal idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF168VBK 1277924 ENCODE Processing Pipeline 4969696381be4520272249396c6e5517 https://www.encodeproject.org/files/ENCFF549VVS/@@download/ENCFF549VVS.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF625YFP bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF444ZJW 4499799 ENCODE Processing Pipeline e1cabd5d288709732b93991cbbae3c36 https://www.encodeproject.org/files/ENCFF625YFP/@@download/ENCFF625YFP.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF293KQB bigBed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF583GIR 5410057 ENCODE Processing Pipeline e0536dd28a49ae18920a81dcedcff704 https://www.encodeproject.org/files/ENCFF293KQB/@@download/ENCFF293KQB.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF437KPV bigBed narrowPeak conservative idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF727BRP 1251934 ENCODE Processing Pipeline 8d3d69abe2c01823fbd916f3c49fc73e https://www.encodeproject.org/files/ENCFF437KPV/@@download/ENCFF437KPV.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF727BRP bed narrowPeak conservative idr thresholded peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF444ZJW, ENCFF536XBD, ENCFF583GIR 688853 ENCODE Processing Pipeline 94666545c3220f31f5dc5435984bc283 https://www.encodeproject.org/files/ENCFF727BRP/@@download/ENCFF727BRP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF000XOX bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 510401518 Michael Snyder, Stanford 3be24eb1d1889912387e7e2b4852110c https://www.encodeproject.org/files/ENCFF000XOX/@@download/ENCFF000XOX.bam hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF000XOY bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 512393080 Michael Snyder, Stanford bb42b1800f896e1d7985b299e735ed66 https://www.encodeproject.org/files/ENCFF000XOY/@@download/ENCFF000XOY.bam hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF000XOZ bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VJV 1145343 Michael Snyder, Stanford 335a82d57a660af42d1add643f697a6e https://www.encodeproject.org/files/ENCFF000XOZ/@@download/ENCFF000XOZ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000XPA fastq reads ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1006037547 Michael Snyder, Stanford 759815e4270a547fda59fd89203275d2 https://www.encodeproject.org/files/ENCFF000XPA/@@download/ENCFF000XPA.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000XPC fastq reads ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1004907563 Michael Snyder, Stanford f4bdf52aa384fd1accd538d7f6dec704 https://www.encodeproject.org/files/ENCFF000XPC/@@download/ENCFF000XPC.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000XPE bigWig signal ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 395228405 Michael Snyder, Stanford 86b9add348d75a98648340fcf9237c28 https://www.encodeproject.org/files/ENCFF000XPE/@@download/ENCFF000XPE.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF001VJV bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 509721 Michael Snyder, Stanford 821265b89bcd5a55aa4f98646f99a058 https://www.encodeproject.org/files/ENCFF001VJV/@@download/ENCFF001VJV.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, missing derived_from, biological replicates with identical biosample ENCFF002CTT bed narrowPeak optimal idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 371442 ENCODE Consortium Analysis Working Group f2dc9c986f80d2c0f13dc34647ca75cf https://www.encodeproject.org/files/ENCFF002CTT/@@download/ENCFF002CTT.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample, missing derived_from ENCFF144JAK bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CTT 910133 ENCODE Consortium a5a4621c7fb3f3002d2ecd396b586d91 https://www.encodeproject.org/files/ENCFF144JAK/@@download/ENCFF144JAK.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF028WLP bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPA, ENCFF643CGH 825966780 ENCODE Processing Pipeline eff51cc52c8c742b9bc189b40ad6e99a https://www.encodeproject.org/files/ENCFF028WLP/@@download/ENCFF028WLP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF029PGR bam unfiltered alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPA, ENCFF643CGH 1165386778 ENCODE Processing Pipeline a61c7554daaad24ea92b62c83e23172c https://www.encodeproject.org/files/ENCFF029PGR/@@download/ENCFF029PGR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF367DUJ bam unfiltered alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPC, ENCFF643CGH 1152272978 ENCODE Processing Pipeline 39b8e308bc4d828e9f38e3ef3fa7ea91 https://www.encodeproject.org/files/ENCFF367DUJ/@@download/ENCFF367DUJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF578TRZ bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPC, ENCFF643CGH 805590555 ENCODE Processing Pipeline dcb1331fb3969e07a9ba30629697826b https://www.encodeproject.org/files/ENCFF578TRZ/@@download/ENCFF578TRZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF082QLF bam unfiltered alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPC, ENCFF807MUK 1147211610 ENCODE Processing Pipeline a779dd637bf40dfd3cafbeafa6d78f9d https://www.encodeproject.org/files/ENCFF082QLF/@@download/ENCFF082QLF.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF547HWS bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPC, ENCFF807MUK 805941165 ENCODE Processing Pipeline 65ac5f343336bd22ecd9f9803f20ac6b https://www.encodeproject.org/files/ENCFF547HWS/@@download/ENCFF547HWS.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF256CVD bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPA, ENCFF807MUK 826225746 ENCODE Processing Pipeline e065afaec3ddbf84c96cf4439d6aae5d https://www.encodeproject.org/files/ENCFF256CVD/@@download/ENCFF256CVD.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF431LOS bam unfiltered alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPA, ENCFF807MUK 1160404830 ENCODE Processing Pipeline 3660ff1d5c0867675e195a54ee85f00b https://www.encodeproject.org/files/ENCFF431LOS/@@download/ENCFF431LOS.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF749SFB bigWig signal p-value ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF028WLP, ENCFF165KZY 536285605 ENCODE Processing Pipeline b70bc7c804987c3bbb30698c1ba0aaa9 https://www.encodeproject.org/files/ENCFF749SFB/@@download/ENCFF749SFB.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF801QSJ bigWig signal p-value ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF578TRZ 532867656 ENCODE Processing Pipeline 16ad613567f43704c3f9dfec84de2e91 https://www.encodeproject.org/files/ENCFF801QSJ/@@download/ENCFF801QSJ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF023IOZ bigWig signal p-value ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF028WLP, ENCFF165KZY, ENCFF578TRZ 729189727 ENCODE Processing Pipeline 967d94f229355b103938169eca32dfee https://www.encodeproject.org/files/ENCFF023IOZ/@@download/ENCFF023IOZ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF663IWV bigWig fold change over control ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF578TRZ 444944081 ENCODE Processing Pipeline a021224a3af3e51a619b5a5af1022b8f https://www.encodeproject.org/files/ENCFF663IWV/@@download/ENCFF663IWV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF464AOQ bigWig fold change over control ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF028WLP, ENCFF165KZY 457206038 ENCODE Processing Pipeline 1fae8c0643ada6f765188691bc3e4111 https://www.encodeproject.org/files/ENCFF464AOQ/@@download/ENCFF464AOQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF569YHZ bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF165KZY, ENCFF578TRZ 4719559 ENCODE Processing Pipeline df482af4acba00d676da28627c87f326 https://www.encodeproject.org/files/ENCFF569YHZ/@@download/ENCFF569YHZ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF170SLM bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF028WLP, ENCFF165KZY, ENCFF578TRZ 5514261 ENCODE Processing Pipeline 116b76ec9486c640432cdd5928eb5180 https://www.encodeproject.org/files/ENCFF170SLM/@@download/ENCFF170SLM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF141YXH bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF283EPC 11080215 ENCODE Processing Pipeline 4fca8a3bcb4e06ed9de34d88c1cabd77 https://www.encodeproject.org/files/ENCFF141YXH/@@download/ENCFF141YXH.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF283EPC bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF028WLP, ENCFF165KZY 5075266 ENCODE Processing Pipeline e2e4d81b59a3b5f0ae4cdb1c16d6a9fd https://www.encodeproject.org/files/ENCFF283EPC/@@download/ENCFF283EPC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF348USU bigWig fold change over control ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF028WLP, ENCFF165KZY, ENCFF578TRZ 756589732 ENCODE Processing Pipeline ea50212451f8a0d762607ac8d2d29235 https://www.encodeproject.org/files/ENCFF348USU/@@download/ENCFF348USU.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF774IBV bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF569YHZ 10893900 ENCODE Processing Pipeline 0d21d81e8e435e61e9f2c04fbf22881a https://www.encodeproject.org/files/ENCFF774IBV/@@download/ENCFF774IBV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF566RUT bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF170SLM 11196525 ENCODE Processing Pipeline 5a278aa0fa0b27a61078687ed20c6adf https://www.encodeproject.org/files/ENCFF566RUT/@@download/ENCFF566RUT.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF399ZZV bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF973QOP 611032 ENCODE Processing Pipeline 35e5b9c35ba50c7ae44fb3dbb2b950af https://www.encodeproject.org/files/ENCFF399ZZV/@@download/ENCFF399ZZV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF863ATX bed narrowPeak optimal idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF170SLM, ENCFF283EPC, ENCFF419RSJ, ENCFF569YHZ 329937 ENCODE Processing Pipeline 89a31a5246967fa9438f7e7c1d73b267 https://www.encodeproject.org/files/ENCFF863ATX/@@download/ENCFF863ATX.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF924OBV bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF863ATX 625108 ENCODE Processing Pipeline 7aad6e3bad6743a605eaf1149c58ec33 https://www.encodeproject.org/files/ENCFF924OBV/@@download/ENCFF924OBV.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF973QOP bed narrowPeak conservative idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF170SLM, ENCFF283EPC, ENCFF419RSJ, ENCFF569YHZ 319231 ENCODE Processing Pipeline 5666c15edf9319a5e4b8f2319f96ee4e https://www.encodeproject.org/files/ENCFF973QOP/@@download/ENCFF973QOP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF919QSI bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF256CVD 5078437 ENCODE Processing Pipeline 4c01119470290b7b1b4610347ffd4918 https://www.encodeproject.org/files/ENCFF919QSI/@@download/ENCFF919QSI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF597WFI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF108RWG 618959 ENCODE Processing Pipeline 362961807c54afcff370eaa126040ed0 https://www.encodeproject.org/files/ENCFF597WFI/@@download/ENCFF597WFI.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF421CEV bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF256CVD, ENCFF547HWS 5795817 ENCODE Processing Pipeline 1b19643b8efa0ffcd764a2f5d26007f0 https://www.encodeproject.org/files/ENCFF421CEV/@@download/ENCFF421CEV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF383KMR bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF242UCP 10898148 ENCODE Processing Pipeline dfa2f2542fc8e411029cd3e1af3845f2 https://www.encodeproject.org/files/ENCFF383KMR/@@download/ENCFF383KMR.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF502XEV bed narrowPeak conservative idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF242UCP, ENCFF421CEV, ENCFF919QSI 320252 ENCODE Processing Pipeline ee11bbc004fe0256ac8c2e07f8fcd0bf https://www.encodeproject.org/files/ENCFF502XEV/@@download/ENCFF502XEV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF493DPP bigWig fold change over control ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF256CVD 455428008 ENCODE Processing Pipeline d3b13c0e2573632e3871b2d1b945ba48 https://www.encodeproject.org/files/ENCFF493DPP/@@download/ENCFF493DPP.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF759NWM bigWig signal p-value ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF547HWS 603140140 ENCODE Processing Pipeline 35c73151a6f5fc1e1d29a11b69eb9fb5 https://www.encodeproject.org/files/ENCFF759NWM/@@download/ENCFF759NWM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF242UCP bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF547HWS 4719580 ENCODE Processing Pipeline b15b40e59b9c3ddb1cf976fea482ddac https://www.encodeproject.org/files/ENCFF242UCP/@@download/ENCFF242UCP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF957DFS bigWig signal p-value ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF256CVD, ENCFF547HWS 728998243 ENCODE Processing Pipeline 9fc3676221e5b99dd65903cf4932bcbf https://www.encodeproject.org/files/ENCFF957DFS/@@download/ENCFF957DFS.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF364QZN bigWig fold change over control ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF547HWS 449601032 ENCODE Processing Pipeline 515270bd06cdc93096dbc057a8adf15a https://www.encodeproject.org/files/ENCFF364QZN/@@download/ENCFF364QZN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF422HTK bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF421CEV 13538050 ENCODE Processing Pipeline 9bd3fc8e852bc8bfe5b74226f56f5171 https://www.encodeproject.org/files/ENCFF422HTK/@@download/ENCFF422HTK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF108RWG bed narrowPeak optimal idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF242UCP, ENCFF421CEV, ENCFF919QSI 326205 ENCODE Processing Pipeline fc82e797bbc6c57a75a31c87bf1c63dd https://www.encodeproject.org/files/ENCFF108RWG/@@download/ENCFF108RWG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF934UDK bigWig signal p-value ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF256CVD 638850276 ENCODE Processing Pipeline 6b0747c09c1258173091f5c53cb71f42 https://www.encodeproject.org/files/ENCFF934UDK/@@download/ENCFF934UDK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF910UYD bigWig fold change over control ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF107SKX, ENCFF256CVD, ENCFF547HWS 759112354 ENCODE Processing Pipeline b8ad5b363052dd3c0393c59d0f8005f3 https://www.encodeproject.org/files/ENCFF910UYD/@@download/ENCFF910UYD.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF753CPD bigBed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF919QSI 11079172 ENCODE Processing Pipeline 38c23e6f165819bec27f93410ef8cc7e https://www.encodeproject.org/files/ENCFF753CPD/@@download/ENCFF753CPD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF740HEB bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF502XEV 610602 ENCODE Processing Pipeline e012411566b28acb6c773c46bcfcacf0 https://www.encodeproject.org/files/ENCFF740HEB/@@download/ENCFF740HEB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF112TJG fastq reads ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 1 ENCFF816RTR 1866043475 Michael Snyder, Stanford d3bfb3857b518be5db47d69e1c62cdf2 SRA:SRR6213868 https://www.encodeproject.org/files/ENCFF112TJG/@@download/ENCFF112TJG.fastq.gz Illumina HiSeq 4000 /files/ENCFF330ZZV/ released antibody characterized with exemption ENCFF816RTR fastq reads ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 1 100 paired-ended 2 ENCFF112TJG 2159461058 Michael Snyder, Stanford 825d8eb033963f990a24baa9ef837c23 SRA:SRR6213868 https://www.encodeproject.org/files/ENCFF816RTR/@@download/ENCFF816RTR.fastq.gz Illumina HiSeq 4000 /files/ENCFF282OJG/ released antibody characterized with exemption ENCFF375FFD bam unfiltered alignments ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF112TJG, ENCFF807MUK, ENCFF816RTR 4089482770 ENCODE Processing Pipeline cf5d097a63576394c19814d26b4fb527 https://www.encodeproject.org/files/ENCFF375FFD/@@download/ENCFF375FFD.bam hg19 released antibody characterized with exemption ENCFF947XNG bam alignments ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF112TJG, ENCFF807MUK, ENCFF816RTR 3281766502 ENCODE Processing Pipeline ff12216b0cbc658ef7a647c8174615e0 https://www.encodeproject.org/files/ENCFF947XNG/@@download/ENCFF947XNG.bam hg19 released antibody characterized with exemption ENCFF219LBN bam unfiltered alignments ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF112TJG, ENCFF643CGH, ENCFF816RTR 4097308070 ENCODE Processing Pipeline 8623b432f7d1e02c91d1702650b3c5e2 https://www.encodeproject.org/files/ENCFF219LBN/@@download/ENCFF219LBN.bam GRCh38 released antibody characterized with exemption ENCFF550JLY bam alignments ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF112TJG, ENCFF643CGH, ENCFF816RTR 3285510660 ENCODE Processing Pipeline 9576ef4509767dcfb381a729bc6cbe16 https://www.encodeproject.org/files/ENCFF550JLY/@@download/ENCFF550JLY.bam GRCh38 released antibody characterized with exemption ENCFF883MSH bigWig signal p-value ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF792NXA, ENCFF947XNG 1080619550 ENCODE Processing Pipeline 39f8d88e13a29571747e1389d805fc44 https://www.encodeproject.org/files/ENCFF883MSH/@@download/ENCFF883MSH.bigWig hg19 released antibody characterized with exemption ENCFF237NQY bed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF792NXA, ENCFF947XNG 6388761 ENCODE Processing Pipeline 47941d70f95744de2f455d8fed7735ef https://www.encodeproject.org/files/ENCFF237NQY/@@download/ENCFF237NQY.bed.gz hg19 released antibody characterized with exemption ENCFF999DNG bigWig fold change over control ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF792NXA, ENCFF947XNG 1045920333 ENCODE Processing Pipeline 766d341730ee42a135d1f3c203d69fd8 https://www.encodeproject.org/files/ENCFF999DNG/@@download/ENCFF999DNG.bigWig hg19 released antibody characterized with exemption ENCFF261BWI bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF001TDO, ENCFF237NQY 453642 ENCODE Processing Pipeline 275d239b4a18b95aa4b605a4a1acbedf https://www.encodeproject.org/files/ENCFF261BWI/@@download/ENCFF261BWI.bed.gz hg19 released antibody characterized with exemption ENCFF082EOZ bigBed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF237NQY 13627095 ENCODE Processing Pipeline c006c5d3a14cc456a503351bb2356cd1 https://www.encodeproject.org/files/ENCFF082EOZ/@@download/ENCFF082EOZ.bigBed hg19 released antibody characterized with exemption ENCFF138QTZ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF261BWI 994694 ENCODE Processing Pipeline d9bf9421f6347235a6aaa4d65727fcda https://www.encodeproject.org/files/ENCFF138QTZ/@@download/ENCFF138QTZ.bigBed hg19 released antibody characterized with exemption ENCFF243WJS bigWig signal p-value ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF550JLY, ENCFF563SSP 1098777775 ENCODE Processing Pipeline 8420b32b3dd7ee321e87b1de22f624b5 https://www.encodeproject.org/files/ENCFF243WJS/@@download/ENCFF243WJS.bigWig GRCh38 released antibody characterized with exemption ENCFF703ZRL bigWig fold change over control ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF550JLY, ENCFF563SSP 1038602063 ENCODE Processing Pipeline e4e153aafc55d1d12443580d372eb38f https://www.encodeproject.org/files/ENCFF703ZRL/@@download/ENCFF703ZRL.bigWig GRCh38 released antibody characterized with exemption ENCFF886WWT bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF419RSJ, ENCFF786QZK 431460 ENCODE Processing Pipeline 8c31e9ec6422c5d8073767e065581693 https://www.encodeproject.org/files/ENCFF886WWT/@@download/ENCFF886WWT.bed.gz GRCh38 released antibody characterized with exemption ENCFF786QZK bed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF550JLY, ENCFF563SSP 6349253 ENCODE Processing Pipeline b23d9988deb63773b95db0e9fcf1d71f https://www.encodeproject.org/files/ENCFF786QZK/@@download/ENCFF786QZK.bed.gz GRCh38 released antibody characterized with exemption ENCFF766CJT bigBed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF786QZK 13590365 ENCODE Processing Pipeline d08d2d5e661231f26b1ee169043f4e64 https://www.encodeproject.org/files/ENCFF766CJT/@@download/ENCFF766CJT.bigBed GRCh38 released antibody characterized with exemption ENCFF086FQM bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF886WWT 770304 ENCODE Processing Pipeline 1ea4f288ced7da0f13a8ee64646bc6f3 https://www.encodeproject.org/files/ENCFF086FQM/@@download/ENCFF086FQM.bigBed GRCh38 released antibody characterized with exemption ENCFF281HTF fastq reads ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 1 76 single-ended 2221181965 Bradley Bernstein, Broad 931225a22ec9625f560004e652bb9748 https://www.encodeproject.org/files/ENCFF281HTF/@@download/ENCFF281HTF.fastq.gz Illumina HiSeq 2500 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, mild to moderate bottlenecking, inconsistent control read length, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF769WTD fastq reads ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1372996292 Bradley Bernstein, Broad 809771fa0dbcce9d9969cd382a969326 https://www.encodeproject.org/files/ENCFF769WTD/@@download/ENCFF769WTD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF805DWT bam unfiltered alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF769WTD 1774776395 ENCODE Processing Pipeline 352eee1ee1453d579f614b78c32f0719 https://www.encodeproject.org/files/ENCFF805DWT/@@download/ENCFF805DWT.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF793DEX bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF769WTD, ENCFF807MUK 919914467 ENCODE Processing Pipeline 52473d7aee7bf8b1d312ac6a2a2f4398 https://www.encodeproject.org/files/ENCFF793DEX/@@download/ENCFF793DEX.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF533YHC bam unfiltered alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF281HTF, ENCFF643CGH 1718122700 ENCODE Processing Pipeline 980cf6e606616c097ed03fd9d9c04a20 https://www.encodeproject.org/files/ENCFF533YHC/@@download/ENCFF533YHC.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF998WUZ bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF281HTF, ENCFF643CGH 1090182255 ENCODE Processing Pipeline 7f1c5222fa39cd65654054407d161bb1 https://www.encodeproject.org/files/ENCFF998WUZ/@@download/ENCFF998WUZ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF490DXV bam unfiltered alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF769WTD, ENCFF807MUK 1766318162 ENCODE Processing Pipeline 703618c44e7ba618507337e2cb69025c https://www.encodeproject.org/files/ENCFF490DXV/@@download/ENCFF490DXV.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF486ISP bam unfiltered alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF281HTF, ENCFF807MUK 1707862447 ENCODE Processing Pipeline 24fe62ca0c24a89f77711a5235e041bf https://www.encodeproject.org/files/ENCFF486ISP/@@download/ENCFF486ISP.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF538IYG bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF769WTD 919651393 ENCODE Processing Pipeline f7d280e4f08dd317b2efd43158787124 https://www.encodeproject.org/files/ENCFF538IYG/@@download/ENCFF538IYG.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF007VCY bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF281HTF, ENCFF807MUK 1090578286 ENCODE Processing Pipeline aa07694af159360b8fdfc9fffa759bd4 https://www.encodeproject.org/files/ENCFF007VCY/@@download/ENCFF007VCY.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF343YKI bigWig signal p-value ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 1850193589 ENCODE Processing Pipeline 07afd518466c0e7e31b4f6493dcd63fa https://www.encodeproject.org/files/ENCFF343YKI/@@download/ENCFF343YKI.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF330HKU bigWig signal p-value ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW 1835776755 ENCODE Processing Pipeline 64d452f9f3ca8ea05513d5d1ed4e05b7 https://www.encodeproject.org/files/ENCFF330HKU/@@download/ENCFF330HKU.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF080WFB bigWig signal p-value ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 1925739368 ENCODE Processing Pipeline 65d89bc3dd06955d67977707d3881af3 https://www.encodeproject.org/files/ENCFF080WFB/@@download/ENCFF080WFB.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF825WPZ bigWig fold change over control ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 1769534092 ENCODE Processing Pipeline a9b9e1a1d3ee265e9731ce9f60a0d85b https://www.encodeproject.org/files/ENCFF825WPZ/@@download/ENCFF825WPZ.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF897HUQ bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 5424455 ENCODE Processing Pipeline 67bfad6c8803d1c58ab2404ee1e4c5a9 https://www.encodeproject.org/files/ENCFF897HUQ/@@download/ENCFF897HUQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF806GAP bigWig signal p-value ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF538IYG 1937269146 ENCODE Processing Pipeline cc41767e9952dc321243efd283bc8b91 https://www.encodeproject.org/files/ENCFF806GAP/@@download/ENCFF806GAP.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF708KOI bigWig fold change over control ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF998WUZ 1683202243 ENCODE Processing Pipeline 7a36e216cd3e43c1d32d0cb2655c56c6 https://www.encodeproject.org/files/ENCFF708KOI/@@download/ENCFF708KOI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF031LJE bigWig fold change over control ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 909432616 ENCODE Processing Pipeline d36dee4e2efed72f59058a2d52c05002 https://www.encodeproject.org/files/ENCFF031LJE/@@download/ENCFF031LJE.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF470ESW bigBed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF422YEP 13644955 ENCODE Processing Pipeline fccd329929cc0ae3c6cf093c46bd0711 https://www.encodeproject.org/files/ENCFF470ESW/@@download/ENCFF470ESW.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF872ZIT bigBed narrowPeak conservative idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF927SKI 186756 ENCODE Processing Pipeline b6eb7f17afb4f739ba6a1ca8f41ddd4a https://www.encodeproject.org/files/ENCFF872ZIT/@@download/ENCFF872ZIT.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF629ERU bigBed narrowPeak optimal idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF583YFS 203131 ENCODE Processing Pipeline 6cd6594fa377be35e4449d4b18a09011 https://www.encodeproject.org/files/ENCFF629ERU/@@download/ENCFF629ERU.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF927SKI bed narrowPeak conservative idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF422YEP, ENCFF578WGS, ENCFF897HUQ 62559 ENCODE Processing Pipeline 427e0cdae8de3da115b7b353cad0c3ef https://www.encodeproject.org/files/ENCFF927SKI/@@download/ENCFF927SKI.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF583YFS bed narrowPeak optimal idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF422YEP, ENCFF578WGS, ENCFF897HUQ 70823 ENCODE Processing Pipeline ec439f6a6be60227055be00080dcf263 https://www.encodeproject.org/files/ENCFF583YFS/@@download/ENCFF583YFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF422YEP bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 6993833 ENCODE Processing Pipeline 10ec91acb8807e4b00e47825f303d770 https://www.encodeproject.org/files/ENCFF422YEP/@@download/ENCFF422YEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF690NPH bigBed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF578WGS 13562824 ENCODE Processing Pipeline 4846f8d971d7cd3fc918c83c9ab98000 https://www.encodeproject.org/files/ENCFF690NPH/@@download/ENCFF690NPH.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF488WRU bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF998WUZ 6603529 ENCODE Processing Pipeline 9f88fd69d1c44ae77146463683cab869 https://www.encodeproject.org/files/ENCFF488WRU/@@download/ENCFF488WRU.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF654ISV bigWig fold change over control ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW 1686977530 ENCODE Processing Pipeline f74b6b577b34bcf8fb4a819a5b2d2073 https://www.encodeproject.org/files/ENCFF654ISV/@@download/ENCFF654ISV.bigWig hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF578WGS bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW 6608236 ENCODE Processing Pipeline 0bda3638e7fc36d52e53e33e7d5d4b77 https://www.encodeproject.org/files/ENCFF578WGS/@@download/ENCFF578WGS.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF229RXS bigBed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF897HUQ 11707227 ENCODE Processing Pipeline f97030a597a8a3e0a09fdc696986118e https://www.encodeproject.org/files/ENCFF229RXS/@@download/ENCFF229RXS.bigBed hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF825WLX bigWig fold change over control ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF538IYG, ENCFF998WUZ 1758417535 ENCODE Processing Pipeline fdf6fc1793061655f8a0648edc369b3d https://www.encodeproject.org/files/ENCFF825WLX/@@download/ENCFF825WLX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF059IGE bed narrowPeak conservative idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF020YJE, ENCFF419RSJ, ENCFF488WRU, ENCFF824SXK 61941 ENCODE Processing Pipeline 0a5ddf9f704dbd3a64f6a5733dc2ff02 https://www.encodeproject.org/files/ENCFF059IGE/@@download/ENCFF059IGE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF006CJS bigWig fold change over control ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF538IYG 904311914 ENCODE Processing Pipeline ff33998721d6fbb8466532f3c9a770ad https://www.encodeproject.org/files/ENCFF006CJS/@@download/ENCFF006CJS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF702KXJ bigWig signal p-value ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF538IYG, ENCFF998WUZ 2073216811 ENCODE Processing Pipeline 69c99dc67762361a773fa0a10d8ed678 https://www.encodeproject.org/files/ENCFF702KXJ/@@download/ENCFF702KXJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF298DCY bigBed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF020YJE 11679338 ENCODE Processing Pipeline a6dae4e4ed7f9707f86723768227a194 https://www.encodeproject.org/files/ENCFF298DCY/@@download/ENCFF298DCY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF840VHQ bigBed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF488WRU 13565740 ENCODE Processing Pipeline 42f1b0476e31e10738c88669388e118e https://www.encodeproject.org/files/ENCFF840VHQ/@@download/ENCFF840VHQ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF033ICA bigWig signal p-value ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF064DDT, ENCFF504ZFN, ENCFF998WUZ 1764049314 ENCODE Processing Pipeline 59e005e33134915b31c02c8d1c017bc9 https://www.encodeproject.org/files/ENCFF033ICA/@@download/ENCFF033ICA.bigWig GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF664RJX bigBed narrowPeak optimal idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF342EEV 201913 ENCODE Processing Pipeline a2896fb2991809d358f6e95e977af8f1 https://www.encodeproject.org/files/ENCFF664RJX/@@download/ENCFF664RJX.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF761EYZ bigBed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF824SXK 13629518 ENCODE Processing Pipeline a6a102dd4f73e549c6eda1f628933614 https://www.encodeproject.org/files/ENCFF761EYZ/@@download/ENCFF761EYZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF020YJE bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF064DDT, ENCFF504ZFN, ENCFF538IYG 5371390 ENCODE Processing Pipeline e5e6e86d85912a3006c033f3907ef55b https://www.encodeproject.org/files/ENCFF020YJE/@@download/ENCFF020YJE.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF824SXK bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF064DDT, ENCFF504ZFN, ENCFF538IYG, ENCFF998WUZ 7002283 ENCODE Processing Pipeline fc0dc7741f7b243d8cbdde9f623f847a https://www.encodeproject.org/files/ENCFF824SXK/@@download/ENCFF824SXK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF916CLA bigBed narrowPeak conservative idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF059IGE 185702 ENCODE Processing Pipeline ca86290bf9a16e5f307c6e7e1558bc23 https://www.encodeproject.org/files/ENCFF916CLA/@@download/ENCFF916CLA.bigBed GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF342EEV bed narrowPeak optimal idr thresholded peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF020YJE, ENCFF419RSJ, ENCFF488WRU, ENCFF824SXK 69730 ENCODE Processing Pipeline dbde3937e8c8db51e886f1f005db59d6 https://www.encodeproject.org/files/ENCFF342EEV/@@download/ENCFF342EEV.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF000CQJ bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000CQV 606072653 Bradley Bernstein, Broad e63d700226ad6113d709aa27b4c09b67 https://www.encodeproject.org/files/ENCFF000CQJ/@@download/ENCFF000CQJ.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF000CQK bigBed broadPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF001TCI 3872249 Bradley Bernstein, Broad 814d3a3457a2816eaaf06f395f49789d https://www.encodeproject.org/files/ENCFF000CQK/@@download/ENCFF000CQK.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF000CQM bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000CQU 426118046 Bradley Bernstein, Broad 563f19abee2b870764d387010fc6004d https://www.encodeproject.org/files/ENCFF000CQM/@@download/ENCFF000CQM.bam hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF000CQN bigWig signal ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 367982779 Bradley Bernstein, Broad 4fe52a48f789fe8fb7ca0c4c72f714ac https://www.encodeproject.org/files/ENCFF000CQN/@@download/ENCFF000CQN.bigWig hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF000CQU fastq reads ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 1 36 single-ended 667126422 Bradley Bernstein, Broad 1e18feab0f63c6aecd6c372944712a25 https://www.encodeproject.org/files/ENCFF000CQU/@@download/ENCFF000CQU.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000CQP/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF000CQV fastq reads ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 1 36 single-ended 703288031 Bradley Bernstein, Broad 83ac91e477a9858ddae7bce8b9299d3b https://www.encodeproject.org/files/ENCFF000CQV/@@download/ENCFF000CQV.fastq.gz Illumina Genome Analyzer IIe /files/ENCFF000CQO/ released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF001TCI bed broadPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2021968 Bradley Bernstein, Broad c4ea5603b405df7f02fb6c208dd19060 https://www.encodeproject.org/files/ENCFF001TCI/@@download/ENCFF001TCI.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF002CFD bed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 780549 ENCODE Consortium Analysis Working Group 5fa838083c1a254895f586ec45178b63 https://www.encodeproject.org/files/ENCFF002CFD/@@download/ENCFF002CFD.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance missing derived_from poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF615UMY bigBed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE ENCFF002CFD 1630286 ENCODE Consortium 164b990dd0f6ac58048f3c313b5abb13 https://www.encodeproject.org/files/ENCFF615UMY/@@download/ENCFF615UMY.bigBed hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF026AUZ bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CQU, ENCFF643CGH 154529774 ENCODE Processing Pipeline 865ce1f4a2bf816196aa0e8bf5c5f82d https://www.encodeproject.org/files/ENCFF026AUZ/@@download/ENCFF026AUZ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF060JGL bam unfiltered alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CQU, ENCFF643CGH 757292754 ENCODE Processing Pipeline 2d311d8fab1d64a46d005108e06d9014 https://www.encodeproject.org/files/ENCFF060JGL/@@download/ENCFF060JGL.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF218NGY bam unfiltered alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CQV, ENCFF643CGH 896214399 ENCODE Processing Pipeline c0035e5d809305b37831674461476956 https://www.encodeproject.org/files/ENCFF218NGY/@@download/ENCFF218NGY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF892QTE bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CQV, ENCFF643CGH 424045795 ENCODE Processing Pipeline 20178deec41fe2b14e65bb9d8af858b1 https://www.encodeproject.org/files/ENCFF892QTE/@@download/ENCFF892QTE.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF360SBD bam unfiltered alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CQU, ENCFF807MUK 755588184 ENCODE Processing Pipeline 61412668f71265ce8eb0fec278d394f7 https://www.encodeproject.org/files/ENCFF360SBD/@@download/ENCFF360SBD.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF345IDF bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CQU, ENCFF807MUK 154637613 ENCODE Processing Pipeline 70735bac2193fe8986348e40dbc87493 https://www.encodeproject.org/files/ENCFF345IDF/@@download/ENCFF345IDF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF079WHC bam unfiltered alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CQV, ENCFF807MUK 893505302 ENCODE Processing Pipeline 56222b66cd022e32c57f4397c1b4a7f3 https://www.encodeproject.org/files/ENCFF079WHC/@@download/ENCFF079WHC.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF211UGH bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CQV, ENCFF807MUK 424166269 ENCODE Processing Pipeline 347bd6f815f357ebf4ee9613885149b4 https://www.encodeproject.org/files/ENCFF211UGH/@@download/ENCFF211UGH.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF266HFJ bigWig fold change over control ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF345IDF 58751234 ENCODE Processing Pipeline 6e89484cd2998aebb5b61981f695efba https://www.encodeproject.org/files/ENCFF266HFJ/@@download/ENCFF266HFJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF579SVE bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW 3874222 ENCODE Processing Pipeline 31eaaf5802f05cec71cf2321a2ddbcfb https://www.encodeproject.org/files/ENCFF579SVE/@@download/ENCFF579SVE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF985UBZ bigBed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF180IOD 3355862 ENCODE Processing Pipeline 13c90c49c00e0c5fc4bf23ffd559dd6b https://www.encodeproject.org/files/ENCFF985UBZ/@@download/ENCFF985UBZ.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF372MMG bigBed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF005HNY 10210867 ENCODE Processing Pipeline 03bed800cb33b6933048910973bbd6ac https://www.encodeproject.org/files/ENCFF372MMG/@@download/ENCFF372MMG.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF180IOD bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF345IDF 1664046 ENCODE Processing Pipeline 25edd2cbc14db3f96a0fc4f8ec35b1b7 https://www.encodeproject.org/files/ENCFF180IOD/@@download/ENCFF180IOD.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF654FCJ bigWig fold change over control ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW, ENCFF345IDF 222586096 ENCODE Processing Pipeline daf036a0913a6f26b1dfde75692ca7ed https://www.encodeproject.org/files/ENCFF654FCJ/@@download/ENCFF654FCJ.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF005HNY bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW, ENCFF345IDF 4284571 ENCODE Processing Pipeline 0822ca9cddee08e6f193202d5cdeb019 https://www.encodeproject.org/files/ENCFF005HNY/@@download/ENCFF005HNY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF109CLL bigBed narrowPeak conservative idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF368AKR 960653 ENCODE Processing Pipeline f39d51f042772d7720edba9dd8e6fb15 https://www.encodeproject.org/files/ENCFF109CLL/@@download/ENCFF109CLL.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF734DZF bed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF005HNY, ENCFF180IOD, ENCFF579SVE 632017 ENCODE Processing Pipeline 19b0f552c264539be3097aab1fcfe955 https://www.encodeproject.org/files/ENCFF734DZF/@@download/ENCFF734DZF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF456KPN bigWig signal p-value ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW 235174293 ENCODE Processing Pipeline cf0c9fab688a7f1a758d78216f155872 https://www.encodeproject.org/files/ENCFF456KPN/@@download/ENCFF456KPN.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF604NVF bigWig signal p-value ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF345IDF 204278593 ENCODE Processing Pipeline 96e83b599f53c33d628d5026501db0e1 https://www.encodeproject.org/files/ENCFF604NVF/@@download/ENCFF604NVF.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF352VMG bigWig signal p-value ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW, ENCFF345IDF 249542078 ENCODE Processing Pipeline 4c0fd5513dd1b68e2d384eee8d2c5cca https://www.encodeproject.org/files/ENCFF352VMG/@@download/ENCFF352VMG.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF028WAA bigWig fold change over control ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW 181307467 ENCODE Processing Pipeline 1e0f7238291a3d479eeda4fcf8060bb7 https://www.encodeproject.org/files/ENCFF028WAA/@@download/ENCFF028WAA.bigWig hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF368AKR bed narrowPeak conservative idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF001TDO, ENCFF005HNY, ENCFF180IOD, ENCFF579SVE 520614 ENCODE Processing Pipeline 9c3421e73d29f2634dabdb32969d091f https://www.encodeproject.org/files/ENCFF368AKR/@@download/ENCFF368AKR.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF745NVR bigBed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF734DZF 1112419 ENCODE Processing Pipeline fb8d141a9034fdbef50d89d86d248a86 https://www.encodeproject.org/files/ENCFF745NVR/@@download/ENCFF745NVR.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF434ZLP bigBed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF579SVE 9340814 ENCODE Processing Pipeline d3f3cdbb6156b98f34aec62c71446419 https://www.encodeproject.org/files/ENCFF434ZLP/@@download/ENCFF434ZLP.bigBed hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF559FCZ bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF892QTE 3780369 ENCODE Processing Pipeline 73c6a620268dfd17f59a53086b00d54a https://www.encodeproject.org/files/ENCFF559FCZ/@@download/ENCFF559FCZ.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF918YJO bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF026AUZ 1686146 ENCODE Processing Pipeline 7d4754c3ae15ee4f77529e29c11887b0 https://www.encodeproject.org/files/ENCFF918YJO/@@download/ENCFF918YJO.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF369XVA bigBed narrowPeak conservative idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF468JKI 946686 ENCODE Processing Pipeline 0ee9663e989d2767a2533c76607dc424 https://www.encodeproject.org/files/ENCFF369XVA/@@download/ENCFF369XVA.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF211MTW bigBed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF559FCZ 9200132 ENCODE Processing Pipeline d7a115c1e63bdeaa1c421d8d04df4168 https://www.encodeproject.org/files/ENCFF211MTW/@@download/ENCFF211MTW.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF871STL bigBed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF406DYX 10152550 ENCODE Processing Pipeline 19201115f6d82b5897a224e08c1efb73 https://www.encodeproject.org/files/ENCFF871STL/@@download/ENCFF871STL.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF298EKM bigWig signal p-value ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF892QTE 235037488 ENCODE Processing Pipeline 8d42abc34680f7aecf7db9dcfc2eb9f0 https://www.encodeproject.org/files/ENCFF298EKM/@@download/ENCFF298EKM.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF599PYU bigWig signal p-value ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF026AUZ 182554033 ENCODE Processing Pipeline d9263645edee45c0f2d3c60cd0286a69 https://www.encodeproject.org/files/ENCFF599PYU/@@download/ENCFF599PYU.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF393FQJ bigWig signal p-value ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF026AUZ, ENCFF892QTE 249344896 ENCODE Processing Pipeline e45ab2e9b5493fad34b67b144e098d01 https://www.encodeproject.org/files/ENCFF393FQJ/@@download/ENCFF393FQJ.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF528ORD bigWig fold change over control ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF026AUZ 58722316 ENCODE Processing Pipeline bbe74ad82ccb85ca7a9f2ca041bb9292 https://www.encodeproject.org/files/ENCFF528ORD/@@download/ENCFF528ORD.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF911FWI bigWig fold change over control ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF026AUZ, ENCFF892QTE 224955699 ENCODE Processing Pipeline 71d3cb35f4aa66b1e766a6311475242b https://www.encodeproject.org/files/ENCFF911FWI/@@download/ENCFF911FWI.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF459GWR bigBed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF918YJO 3405950 ENCODE Processing Pipeline c2f2b597f97bfce2aab1e32455e0033b https://www.encodeproject.org/files/ENCFF459GWR/@@download/ENCFF459GWR.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF468JKI bed narrowPeak conservative idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF406DYX, ENCFF419RSJ, ENCFF559FCZ, ENCFF918YJO 512716 ENCODE Processing Pipeline edba1107a093c796e74ef2c70289df24 https://www.encodeproject.org/files/ENCFF468JKI/@@download/ENCFF468JKI.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF567WCU bigWig fold change over control ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF892QTE 180910249 ENCODE Processing Pipeline 731a3ada815981fa1af3a20aed474005 https://www.encodeproject.org/files/ENCFF567WCU/@@download/ENCFF567WCU.bigWig GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF406DYX bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF026AUZ, ENCFF892QTE 4242253 ENCODE Processing Pipeline 8a7f713bd6d06ce004129edab6212ceb https://www.encodeproject.org/files/ENCFF406DYX/@@download/ENCFF406DYX.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF954FAQ bed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF406DYX, ENCFF419RSJ, ENCFF559FCZ, ENCFF918YJO 614070 ENCODE Processing Pipeline ec43832906832df2baa44060eedc19cf https://www.encodeproject.org/files/ENCFF954FAQ/@@download/ENCFF954FAQ.bed.gz GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF900NMR bigBed narrowPeak optimal idr thresholded peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1, 2 ENCFF954FAQ 1083356 ENCODE Processing Pipeline 14c98bfef3651cc5239f485aa7ae6b9f https://www.encodeproject.org/files/ENCFF900NMR/@@download/ENCFF900NMR.bigBed GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF001HWO bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXB 418823591 John Stamatoyannopoulos, UW 3f856c7a5a02e640c4f6d96e2b31740b https://www.encodeproject.org/files/ENCFF001HWO/@@download/ENCFF001HWO.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWP bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXA 529690825 John Stamatoyannopoulos, UW 9d5593dbd76f54dee67d4f975526de9a https://www.encodeproject.org/files/ENCFF001HWP/@@download/ENCFF001HWP.bam hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWQ bigBed broadPeak hotspots ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XTP 3135885 John Stamatoyannopoulos, UW 25e4cfc4890029913ee77e9c18b24433 https://www.encodeproject.org/files/ENCFF001HWQ/@@download/ENCFF001HWQ.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWR bigBed broadPeak hotspots ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XTR 4259814 John Stamatoyannopoulos, UW 7742fb528135c95dcdf17a25d5f62f7d https://www.encodeproject.org/files/ENCFF001HWR/@@download/ENCFF001HWR.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWS bigBed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XTQ 1075462 John Stamatoyannopoulos, UW dba0a4612a30d07102a10cbd2e8cad5b https://www.encodeproject.org/files/ENCFF001HWS/@@download/ENCFF001HWS.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWT bigBed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XTS 1465887 John Stamatoyannopoulos, UW 253a1e962b20542a9b1cd3cf44c08b84 https://www.encodeproject.org/files/ENCFF001HWT/@@download/ENCFF001HWT.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWV bigWig raw signal ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HWO 50169830 John Stamatoyannopoulos, UW ace97f2b7856dc1f6dc33de68cc30de8 https://www.encodeproject.org/files/ENCFF001HWV/@@download/ENCFF001HWV.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HWW bigWig raw signal ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HWP 65570216 John Stamatoyannopoulos, UW 1ed4a3faab0d56582469926692086e2d https://www.encodeproject.org/files/ENCFF001HWW/@@download/ENCFF001HWW.bigWig hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HXA fastq reads ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 658070362 John Stamatoyannopoulos, UW 0d8ea86eec8883038599b7e8efe98fcb https://www.encodeproject.org/files/ENCFF001HXA/@@download/ENCFF001HXA.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HXF/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001HXB fastq reads ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 578277667 John Stamatoyannopoulos, UW d07e7802f35527661e5fffeff9784905 https://www.encodeproject.org/files/ENCFF001HXB/@@download/ENCFF001HXB.fastq.gz Illumina Genome Analyzer II /files/ENCFF001HXF/ released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001XTP bed broadPeak hotspots ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HWO 2230519 John Stamatoyannopoulos, UW 0f02e6cc1c8cfb90996bf15ab0240d78 https://www.encodeproject.org/files/ENCFF001XTP/@@download/ENCFF001XTP.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001XTQ bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HWO 764075 John Stamatoyannopoulos, UW 5477edaaa4ae7c17ab6288a99066c007 https://www.encodeproject.org/files/ENCFF001XTQ/@@download/ENCFF001XTQ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001XTR bed broadPeak hotspots ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HWP 2336729 John Stamatoyannopoulos, UW 87554063ad0ddbb38329e9a3731c8812 https://www.encodeproject.org/files/ENCFF001XTR/@@download/ENCFF001XTR.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF001XTS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HWP 859303 John Stamatoyannopoulos, UW 772bfb88e8cf6aad3cae3467a73f969d https://www.encodeproject.org/files/ENCFF001XTS/@@download/ENCFF001XTS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF002DDQ bed narrowPeak optimal idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001HWO, ENCFF001HWP 837045 ENCODE Consortium Analysis Working Group b5b6873cc98fdcb33c369f06cb4ce76b https://www.encodeproject.org/files/ENCFF002DDQ/@@download/ENCFF002DDQ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF745PFF bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF002DDQ 1868740 ENCODE Consortium 1171b7c24e8791e85f5a6a45d5132165 https://www.encodeproject.org/files/ENCFF745PFF/@@download/ENCFF745PFF.bigBed hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF867JLT bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXB, ENCFF643CGH 220440971 ENCODE Processing Pipeline 301037d565fdb32de23a2b55bfce611d https://www.encodeproject.org/files/ENCFF867JLT/@@download/ENCFF867JLT.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF110MYH bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXA, ENCFF643CGH 336701041 ENCODE Processing Pipeline cdfd2f47278045abf633d0afc08bfacf https://www.encodeproject.org/files/ENCFF110MYH/@@download/ENCFF110MYH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF813KUX bam unfiltered alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXB, ENCFF643CGH 592191534 ENCODE Processing Pipeline ae21baa9e2264d852dac1d7f4464a97c https://www.encodeproject.org/files/ENCFF813KUX/@@download/ENCFF813KUX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF005SIQ bam unfiltered alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXA, ENCFF643CGH 697398149 ENCODE Processing Pipeline 2ca5390d75db9f3021d2cc0a83ba58e2 https://www.encodeproject.org/files/ENCFF005SIQ/@@download/ENCFF005SIQ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF604UYQ bam unfiltered alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXA, ENCFF807MUK 696039906 ENCODE Processing Pipeline b8e103fec54b590e3ad4d70c629621da https://www.encodeproject.org/files/ENCFF604UYQ/@@download/ENCFF604UYQ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF902PDL bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXA, ENCFF807MUK 336875082 ENCODE Processing Pipeline ab6be42e041894859a636ddcf740cbd4 https://www.encodeproject.org/files/ENCFF902PDL/@@download/ENCFF902PDL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF863LNN bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXB, ENCFF807MUK 220589490 ENCODE Processing Pipeline 9b6388ecdf72ac26e14ffd0c1ecc5743 https://www.encodeproject.org/files/ENCFF863LNN/@@download/ENCFF863LNN.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF902AMP bam unfiltered alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXB, ENCFF807MUK 591116845 ENCODE Processing Pipeline 453205c81e718b39d2f46a6fd612ca35 https://www.encodeproject.org/files/ENCFF902AMP/@@download/ENCFF902AMP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF327XFH bigWig signal p-value ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF727MWW, ENCFF863LNN 271063958 ENCODE Processing Pipeline 9782bade0b7fc061920184e51e68a491 https://www.encodeproject.org/files/ENCFF327XFH/@@download/ENCFF327XFH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF537KIL bigWig signal p-value ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MWW, ENCFF902PDL 249209110 ENCODE Processing Pipeline fb3f6c7a0bfa1c451aa6b87ab13bbfc1 https://www.encodeproject.org/files/ENCFF537KIL/@@download/ENCFF537KIL.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF116QJH bigWig signal p-value ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF727MWW, ENCFF863LNN, ENCFF902PDL 301582434 ENCODE Processing Pipeline e64a2c4c6618db0815420e9a6beadad6 https://www.encodeproject.org/files/ENCFF116QJH/@@download/ENCFF116QJH.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF821CAK bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF727MWW, ENCFF863LNN, ENCFF902PDL 3846590 ENCODE Processing Pipeline 6fe1011ed9b997055bf0b27e0134f76b https://www.encodeproject.org/files/ENCFF821CAK/@@download/ENCFF821CAK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF866SEH bigBed narrowPeak optimal idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF401ONY 1289297 ENCODE Processing Pipeline a46d4781b3c3e448fc1e05ef316948f4 https://www.encodeproject.org/files/ENCFF866SEH/@@download/ENCFF866SEH.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF923NZU bigWig fold change over control ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF727MWW, ENCFF863LNN, ENCFF902PDL 172485900 ENCODE Processing Pipeline ae80e413d2b52163b427cd9be4a695a0 https://www.encodeproject.org/files/ENCFF923NZU/@@download/ENCFF923NZU.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF704MXD bigBed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF453SOO 3982388 ENCODE Processing Pipeline 3d5d04ff2a5da16965fb14af0eabbe90 https://www.encodeproject.org/files/ENCFF704MXD/@@download/ENCFF704MXD.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF833LSO bed narrowPeak conservative idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF116ONS, ENCFF453SOO, ENCFF821CAK 683562 ENCODE Processing Pipeline f9c78cd5160c32aa7f2640e99b8ac86e https://www.encodeproject.org/files/ENCFF833LSO/@@download/ENCFF833LSO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF530III bigWig fold change over control ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF727MWW, ENCFF863LNN 76992004 ENCODE Processing Pipeline 7184133bb1dce7882cb2d4bcf72f60b5 https://www.encodeproject.org/files/ENCFF530III/@@download/ENCFF530III.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF453SOO bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF727MWW, ENCFF863LNN 1882219 ENCODE Processing Pipeline 9c8669e6872848a21b9b0c96662e1955 https://www.encodeproject.org/files/ENCFF453SOO/@@download/ENCFF453SOO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF086GHF bigWig fold change over control ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MWW, ENCFF902PDL 114316258 ENCODE Processing Pipeline 17e4e74a6134817928df844f2e3284c5 https://www.encodeproject.org/files/ENCFF086GHF/@@download/ENCFF086GHF.bigWig hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF401ONY bed narrowPeak optimal idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF116ONS, ENCFF453SOO, ENCFF821CAK 707859 ENCODE Processing Pipeline bd9ebf6bcf664839e8f8464a465ebea0 https://www.encodeproject.org/files/ENCFF401ONY/@@download/ENCFF401ONY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF116ONS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MWW, ENCFF902PDL 2413791 ENCODE Processing Pipeline 4f2cc4f0d15588e8ef5b158611ddeea3 https://www.encodeproject.org/files/ENCFF116ONS/@@download/ENCFF116ONS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF406IBT bigBed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF116ONS 4955866 ENCODE Processing Pipeline 7fb72275d5605bc176a904fd7bedd1fc https://www.encodeproject.org/files/ENCFF406IBT/@@download/ENCFF406IBT.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF265YLN bigBed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF821CAK 9306916 ENCODE Processing Pipeline 15dca318194e0aa38bf6df75c5db6ac1 https://www.encodeproject.org/files/ENCFF265YLN/@@download/ENCFF265YLN.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF652XWW bigBed narrowPeak conservative idr thresholded peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF833LSO 1258560 ENCODE Processing Pipeline 8694b90050604f413136965b93b49cf8 https://www.encodeproject.org/files/ENCFF652XWW/@@download/ENCFF652XWW.bigBed hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF000CAU bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 1 ENCFF000CBH 1166786786 Bradley Bernstein, Broad d44c18edc5f61d0719e805311a4369f7 https://www.encodeproject.org/files/ENCFF000CAU/@@download/ENCFF000CAU.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF000CAV bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 2 ENCFF000CBM 841757091 Bradley Bernstein, Broad 98504c95d926dc10dba0039a9f24e3f8 https://www.encodeproject.org/files/ENCFF000CAV/@@download/ENCFF000CAV.bam hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF000CAW bigBed broadPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE ENCFF001SZY 3320545 Bradley Bernstein, Broad e487b9f8cd8d29a06c63b5ff697e3120 https://www.encodeproject.org/files/ENCFF000CAW/@@download/ENCFF000CAW.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF000CBA bigWig signal ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 440934987 Bradley Bernstein, Broad fe50d90e4411e030e1416d8dbb00ac30 https://www.encodeproject.org/files/ENCFF000CBA/@@download/ENCFF000CBA.bigWig hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF000CBH fastq reads ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 1 36 single-ended 1493548027 Bradley Bernstein, Broad 3e99a90cac0617130f822bb0b79373df https://www.encodeproject.org/files/ENCFF000CBH/@@download/ENCFF000CBH.fastq.gz Illumina Genome Analyzer /files/ENCFF000BWK/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF000CBM fastq reads ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 2 36 single-ended 1364757602 Bradley Bernstein, Broad c8db4b703fee6cd631ed5ba825e4f5ca https://www.encodeproject.org/files/ENCFF000CBM/@@download/ENCFF000CBM.fastq.gz Illumina Genome Analyzer /files/ENCFF000BWK/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF001SZY bed broadPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2079441 Bradley Bernstein, Broad ec05d7c145c8a558b3937ff97bcc581d https://www.encodeproject.org/files/ENCFF001SZY/@@download/ENCFF001SZY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF002CES bed narrowPeak optimal idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 369147 ENCODE Consortium Analysis Working Group 86b81d77fa5dc25665ce55080ea5a16e https://www.encodeproject.org/files/ENCFF002CES/@@download/ENCFF002CES.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF720HWG bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE ENCFF002CES 1020821 ENCODE Consortium 43c29c268075ea8a8e0d6bdba81cfdb4 https://www.encodeproject.org/files/ENCFF720HWG/@@download/ENCFF720HWG.bigBed hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF137VMP fastq reads ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 1 36 single-ended 518319748 Bradley Bernstein, Broad 95831a573306940f3b78c76093f971b1 https://www.encodeproject.org/files/ENCFF137VMP/@@download/ENCFF137VMP.fastq.gz Illumina HiSeq 2500 /files/ENCFF283HQV/, /files/ENCFF994FIB/ released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF900XIK fastq reads ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 3 1 76 single-ended 1724844621 Bradley Bernstein, Broad f04b81792885e668ad5780d23198d223 https://www.encodeproject.org/files/ENCFF900XIK/@@download/ENCFF900XIK.fastq.gz Illumina HiSeq 2500 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate missing controlled_by, insufficient replicate concordance ENCFF712FGN bam unfiltered alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF137VMP, ENCFF643CGH 737845421 ENCODE Processing Pipeline ca9c8d3b8e18949bcea3887cf16ec486 https://www.encodeproject.org/files/ENCFF712FGN/@@download/ENCFF712FGN.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF529ZVO bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF137VMP, ENCFF643CGH 432824575 ENCODE Processing Pipeline 34bfbe69f797dd0fc145d27df5fb7cab https://www.encodeproject.org/files/ENCFF529ZVO/@@download/ENCFF529ZVO.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF873CAZ bam unfiltered alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CBH, ENCFF000CBM, ENCFF643CGH 3467434586 ENCODE Processing Pipeline c84e58caf39893ceebdbddf47b86826d https://www.encodeproject.org/files/ENCFF873CAZ/@@download/ENCFF873CAZ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF915BFX bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CBH, ENCFF000CBM, ENCFF643CGH 1422614432 ENCODE Processing Pipeline 06be902ca481596d1f8c431dc733fb49 https://www.encodeproject.org/files/ENCFF915BFX/@@download/ENCFF915BFX.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF232ZEG bam unfiltered alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF137VMP, ENCFF807MUK 732702853 ENCODE Processing Pipeline 568db45df9553f3bde6b4c5fa0960ec5 https://www.encodeproject.org/files/ENCFF232ZEG/@@download/ENCFF232ZEG.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF508VRU bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF137VMP, ENCFF807MUK 433147837 ENCODE Processing Pipeline 8c39133b38b080aa8a2ad678995db4ec https://www.encodeproject.org/files/ENCFF508VRU/@@download/ENCFF508VRU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF707IOX bam unfiltered alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CBH, ENCFF000CBM, ENCFF807MUK 3452802796 ENCODE Processing Pipeline bf65eed6f6d61575c32c259dab8ba563 https://www.encodeproject.org/files/ENCFF707IOX/@@download/ENCFF707IOX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF968GEX bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CBH, ENCFF000CBM, ENCFF807MUK 1423731040 ENCODE Processing Pipeline 7dff9c965bdb1b448821524ad09d479a https://www.encodeproject.org/files/ENCFF968GEX/@@download/ENCFF968GEX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF918ZEJ bigWig signal p-value ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF829HZY, ENCFF915BFX 561147824 ENCODE Processing Pipeline a9b17271b25ae61e87e29cc104efa62f https://www.encodeproject.org/files/ENCFF918ZEJ/@@download/ENCFF918ZEJ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF686LQB bigWig signal p-value ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF574XYY, ENCFF968GEX 590665320 ENCODE Processing Pipeline ab5f357e6bba5e525a34d781b1186a36 https://www.encodeproject.org/files/ENCFF686LQB/@@download/ENCFF686LQB.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF910RDO bigWig fold change over control ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF829HZY, ENCFF915BFX 525103888 ENCODE Processing Pipeline d718f896b27036b87bf73550abd59dae https://www.encodeproject.org/files/ENCFF910RDO/@@download/ENCFF910RDO.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF814JBU bigWig fold change over control ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF574XYY, ENCFF968GEX 517224077 ENCODE Processing Pipeline 9ff1652b2b52ca863db4defe7015c3e5 https://www.encodeproject.org/files/ENCFF814JBU/@@download/ENCFF814JBU.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF884ZRY bigWig signal p-value ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF529ZVO, ENCFF829HZY, ENCFF915BFX 661763404 ENCODE Processing Pipeline 64420317dbb55616c5070277fc386214 https://www.encodeproject.org/files/ENCFF884ZRY/@@download/ENCFF884ZRY.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF574FSI bigWig signal p-value ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF508VRU 302568321 ENCODE Processing Pipeline 9cab78fabc185fd2555973566a2f6d1f https://www.encodeproject.org/files/ENCFF574FSI/@@download/ENCFF574FSI.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF334EYE bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF392XRJ, ENCFF829HZY, ENCFF915BFX 6507653 ENCODE Processing Pipeline 17360aff5282fadbdaf170d7933f703b https://www.encodeproject.org/files/ENCFF334EYE/@@download/ENCFF334EYE.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF454LRZ bigWig fold change over control ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF529ZVO, ENCFF829HZY 274523667 ENCODE Processing Pipeline 02b2c8ffe14ee3dff77dc79ff2562ec6 https://www.encodeproject.org/files/ENCFF454LRZ/@@download/ENCFF454LRZ.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF296MZN bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF529ZVO, ENCFF829HZY, ENCFF915BFX 6759066 ENCODE Processing Pipeline b36f176dea912eace8aac61b36d59f08 https://www.encodeproject.org/files/ENCFF296MZN/@@download/ENCFF296MZN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF629JIS bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF574XYY, ENCFF968GEX 6530562 ENCODE Processing Pipeline 5fddb2dafc4ceb20398de06505d31d68 https://www.encodeproject.org/files/ENCFF629JIS/@@download/ENCFF629JIS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF293III bigWig fold change over control ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF508VRU, ENCFF574XYY, ENCFF968GEX 704822557 ENCODE Processing Pipeline 3659b31f47ef19040afb6154dfa185e5 https://www.encodeproject.org/files/ENCFF293III/@@download/ENCFF293III.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF998PSG bigWig signal p-value ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF529ZVO, ENCFF829HZY 307706756 ENCODE Processing Pipeline facfe4c2631d6add28a413bf65bb3bab https://www.encodeproject.org/files/ENCFF998PSG/@@download/ENCFF998PSG.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF587QLW bigWig fold change over control ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF508VRU 286085431 ENCODE Processing Pipeline bdd88c8acd0702f0acf710b94ac27480 https://www.encodeproject.org/files/ENCFF587QLW/@@download/ENCFF587QLW.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF455EXO bigWig signal p-value ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF508VRU, ENCFF574XYY, ENCFF968GEX 657586728 ENCODE Processing Pipeline e075f934ddd92afd8c65a5fdb529868b https://www.encodeproject.org/files/ENCFF455EXO/@@download/ENCFF455EXO.bigWig hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF253NQI bigWig fold change over control ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF392XRJ, ENCFF529ZVO, ENCFF829HZY, ENCFF915BFX 711467505 ENCODE Processing Pipeline 4bb0f4790d0effe79f0b9953b154e2c5 https://www.encodeproject.org/files/ENCFF253NQI/@@download/ENCFF253NQI.bigWig GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF604PEX bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF529ZVO, ENCFF829HZY 4452898 ENCODE Processing Pipeline 08cf1d7680eb25c63175fe4f0c702aef https://www.encodeproject.org/files/ENCFF604PEX/@@download/ENCFF604PEX.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF573OMT bed narrowPeak conservative idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF296MZN, ENCFF334EYE, ENCFF419RSJ, ENCFF604PEX 6809 ENCODE Processing Pipeline fe02d957bdc075288e2b2fa3ac5d9aac https://www.encodeproject.org/files/ENCFF573OMT/@@download/ENCFF573OMT.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF781VIH bigBed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF334EYE 12931157 ENCODE Processing Pipeline 0b2dce156a4738064d61b344300d8169 https://www.encodeproject.org/files/ENCFF781VIH/@@download/ENCFF781VIH.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF016LIP bigBed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF604PEX 10596014 ENCODE Processing Pipeline 4c5c799e641a0d9173b3d88c191e22ab https://www.encodeproject.org/files/ENCFF016LIP/@@download/ENCFF016LIP.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF561MMC bigBed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF629JIS 12923258 ENCODE Processing Pipeline 5dd92db173ef4de1bf4687becad31609 https://www.encodeproject.org/files/ENCFF561MMC/@@download/ENCFF561MMC.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF202LXS bigBed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF106WXI 10596887 ENCODE Processing Pipeline 82b4fc66f818960f55a8ff4bc95fe66b https://www.encodeproject.org/files/ENCFF202LXS/@@download/ENCFF202LXS.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF299UWD bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF668XLN 948867 ENCODE Processing Pipeline 6fb2cae9101dc6c3e515654828bd62f0 https://www.encodeproject.org/files/ENCFF299UWD/@@download/ENCFF299UWD.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF106WXI bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF508VRU 4459629 ENCODE Processing Pipeline 28a4597f2f0ebdeb3dba733477d56e22 https://www.encodeproject.org/files/ENCFF106WXI/@@download/ENCFF106WXI.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF866AOB bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF573OMT 73703 ENCODE Processing Pipeline 3839fb7f91c82b84d11b63cfc9939c7d https://www.encodeproject.org/files/ENCFF866AOB/@@download/ENCFF866AOB.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF730XFE bigBed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF758VGA 13034881 ENCODE Processing Pipeline 086dec9dff0b4ea90a3d2b83f4b82368 https://www.encodeproject.org/files/ENCFF730XFE/@@download/ENCFF730XFE.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF758VGA bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF508VRU, ENCFF574XYY, ENCFF968GEX 6798083 ENCODE Processing Pipeline 7e0ae144ef9fcd17e9e7f5ac2548024f https://www.encodeproject.org/files/ENCFF758VGA/@@download/ENCFF758VGA.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF574CJH bigBed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF296MZN 13023749 ENCODE Processing Pipeline 02827b91e8679f2995c8d921a174b270 https://www.encodeproject.org/files/ENCFF574CJH/@@download/ENCFF574CJH.bigBed GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF668XLN bed narrowPeak optimal idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF296MZN, ENCFF334EYE, ENCFF419RSJ, ENCFF604PEX 399306 ENCODE Processing Pipeline ca7272ef7a4efd32be3d3dd96504e87c https://www.encodeproject.org/files/ENCFF668XLN/@@download/ENCFF668XLN.bed.gz GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF826CYV bed narrowPeak conservative idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF106WXI, ENCFF629JIS, ENCFF758VGA 5590 ENCODE Processing Pipeline 2c9aa433dd5ca7fe69d8f7b71a3f29da https://www.encodeproject.org/files/ENCFF826CYV/@@download/ENCFF826CYV.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF368TYM bed narrowPeak optimal idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF001TDO, ENCFF106WXI, ENCFF629JIS, ENCFF758VGA 411041 ENCODE Processing Pipeline 345d4603d143c43d2fd3a5937287c1f4 https://www.encodeproject.org/files/ENCFF368TYM/@@download/ENCFF368TYM.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF618SCF bigBed narrowPeak conservative idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF826CYV 79701 ENCODE Processing Pipeline bff4188125842e04f13a1ed614370b7a https://www.encodeproject.org/files/ENCFF618SCF/@@download/ENCFF618SCF.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF466WSJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF368TYM 1151068 ENCODE Processing Pipeline 8d9ce01d0c4949b4cc116113f7dbb3fd https://www.encodeproject.org/files/ENCFF466WSJ/@@download/ENCFF466WSJ.bigBed hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF000NBK bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NBZ 920208707 Richard Myers, HAIB 7d4cece49f3385d9bafb5e3039841848 https://www.encodeproject.org/files/ENCFF000NBK/@@download/ENCFF000NBK.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBN bigBed broadPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TSP 593169 Richard Myers, HAIB 36fbcc86f9784ca52a7bf4574ba37d5d https://www.encodeproject.org/files/ENCFF000NBN/@@download/ENCFF000NBN.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBO bigBed broadPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TSQ 553306 Richard Myers, HAIB 1ad9ccd3c815887a529b575c04c7ea61 https://www.encodeproject.org/files/ENCFF000NBO/@@download/ENCFF000NBO.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBP bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NBX 776956220 Richard Myers, HAIB b3c6573a073b1a0da54b3c859e6347ba https://www.encodeproject.org/files/ENCFF000NBP/@@download/ENCFF000NBP.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBQ bigWig raw signal ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 27201407 Richard Myers, HAIB f32640c8e7af3be9ce8a728ad4236a0b https://www.encodeproject.org/files/ENCFF000NBQ/@@download/ENCFF000NBQ.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000NBS bigWig raw signal ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 23412689 Richard Myers, HAIB 9b0d753f6177c69af372a3e8ae7301ed https://www.encodeproject.org/files/ENCFF000NBS/@@download/ENCFF000NBS.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF000NBX fastq reads ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 764824803 Richard Myers, HAIB 0d09ba45cebbea8c358ca35f54c2a0b9 https://www.encodeproject.org/files/ENCFF000NBX/@@download/ENCFF000NBX.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NCO/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000NBZ fastq reads ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 934035248 Richard Myers, HAIB 7a7a8b1190098b403c029c50687fdfe1 https://www.encodeproject.org/files/ENCFF000NBZ/@@download/ENCFF000NBZ.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NCL/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001TSP bed broadPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 357327 Richard Myers, HAIB 726d4a747480a147749fd14e43647179 https://www.encodeproject.org/files/ENCFF001TSP/@@download/ENCFF001TSP.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample ENCFF001TSQ bed broadPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 340835 Richard Myers, HAIB 18086c08c4ea41ac0c3794ff2c0bf4be https://www.encodeproject.org/files/ENCFF001TSQ/@@download/ENCFF001TSQ.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF002CFR bed narrowPeak optimal idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 569705 ENCODE Consortium Analysis Working Group 3c217e8778ef5e9e7a24ade03de7f67f https://www.encodeproject.org/files/ENCFF002CFR/@@download/ENCFF002CFR.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF451ZHC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CFR 1306854 ENCODE Consortium ee005f7f54d94afcc3f4862b86f7a0c7 https://www.encodeproject.org/files/ENCFF451ZHC/@@download/ENCFF451ZHC.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF703HTN bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBX, ENCFF643CGH 613343067 ENCODE Processing Pipeline f05d504b421a6d5ec37f49a3694124c3 https://www.encodeproject.org/files/ENCFF703HTN/@@download/ENCFF703HTN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384SJW bam unfiltered alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBX, ENCFF643CGH 996202779 ENCODE Processing Pipeline c9236e88b12c214e0d7ce2b60b576798 https://www.encodeproject.org/files/ENCFF384SJW/@@download/ENCFF384SJW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF007KKM bam unfiltered alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBZ, ENCFF643CGH 1203433547 ENCODE Processing Pipeline e54447787ee36823a9129a43d769a126 https://www.encodeproject.org/files/ENCFF007KKM/@@download/ENCFF007KKM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF599NFC bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBZ, ENCFF643CGH 716736569 ENCODE Processing Pipeline 57b48a6cac317ae38edd4428d431d0d4 https://www.encodeproject.org/files/ENCFF599NFC/@@download/ENCFF599NFC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF754YWA bam unfiltered alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBZ, ENCFF807MUK 1199128156 ENCODE Processing Pipeline f77ea65999f92efa5dc1d3c8dfd17b24 https://www.encodeproject.org/files/ENCFF754YWA/@@download/ENCFF754YWA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF933UZL bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBX, ENCFF807MUK 613633405 ENCODE Processing Pipeline fac701699299207b0a5f233738f9b991 https://www.encodeproject.org/files/ENCFF933UZL/@@download/ENCFF933UZL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF456TVS bam unfiltered alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBX, ENCFF807MUK 993136988 ENCODE Processing Pipeline 1692a6144d7193970d09b62437935cf6 https://www.encodeproject.org/files/ENCFF456TVS/@@download/ENCFF456TVS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500MOX bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBZ, ENCFF807MUK 716939290 ENCODE Processing Pipeline 8503fa5b1a9345201d703389dd8fe477 https://www.encodeproject.org/files/ENCFF500MOX/@@download/ENCFF500MOX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF321KAW bigWig signal p-value ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF599NFC 322563780 ENCODE Processing Pipeline dbee5fa1d70b3464b5ed79421724e847 https://www.encodeproject.org/files/ENCFF321KAW/@@download/ENCFF321KAW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF162VQC bigWig signal p-value ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF703HTN 328067366 ENCODE Processing Pipeline b3378b8b8d413ec0deedb89b21b1a62d https://www.encodeproject.org/files/ENCFF162VQC/@@download/ENCFF162VQC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF905AMR bigWig signal p-value ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF599NFC, ENCFF703HTN 608512865 ENCODE Processing Pipeline e39df3f08ba7e65def88e2b54ce01eea https://www.encodeproject.org/files/ENCFF905AMR/@@download/ENCFF905AMR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF566LUA bigWig fold change over control ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF599NFC 276480260 ENCODE Processing Pipeline baae4f2344d8f59752db2fecb702caa9 https://www.encodeproject.org/files/ENCFF566LUA/@@download/ENCFF566LUA.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296ALC bigWig fold change over control ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF703HTN 257763230 ENCODE Processing Pipeline 83608306862714efaa235a06d2a9ce1b https://www.encodeproject.org/files/ENCFF296ALC/@@download/ENCFF296ALC.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF370ILE bigWig fold change over control ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF599NFC, ENCFF703HTN 582096169 ENCODE Processing Pipeline f8caa497a4a29df89f2a03abd2d74def https://www.encodeproject.org/files/ENCFF370ILE/@@download/ENCFF370ILE.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF580WFC bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF703HTN 4749628 ENCODE Processing Pipeline 457117e1c5da7f299540467447fde09b https://www.encodeproject.org/files/ENCFF580WFC/@@download/ENCFF580WFC.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF337SWA bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF599NFC 4591712 ENCODE Processing Pipeline 5da92c122ef37cddbe5e01e212d16a24 https://www.encodeproject.org/files/ENCFF337SWA/@@download/ENCFF337SWA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF059UCY bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF599NFC, ENCFF703HTN 5927921 ENCODE Processing Pipeline e2e38b5cbf2c6958a989f82e28b671b1 https://www.encodeproject.org/files/ENCFF059UCY/@@download/ENCFF059UCY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF280IGO bigBed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF337SWA 10629962 ENCODE Processing Pipeline b05677722f15ba8c09800b297da8ea82 https://www.encodeproject.org/files/ENCFF280IGO/@@download/ENCFF280IGO.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF799XWR bigBed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059UCY 13497324 ENCODE Processing Pipeline eb1e4ae2f88acb9df73a50a3c02e8fa5 https://www.encodeproject.org/files/ENCFF799XWR/@@download/ENCFF799XWR.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF009APP bed narrowPeak conservative idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059UCY, ENCFF337SWA, ENCFF419RSJ, ENCFF580WFC 421065 ENCODE Processing Pipeline afff983674109227e075447c71dc31f2 https://www.encodeproject.org/files/ENCFF009APP/@@download/ENCFF009APP.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF126PAU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF114SRD 976872 ENCODE Processing Pipeline dea505b25dbad07d1b259875a6a2f7c3 https://www.encodeproject.org/files/ENCFF126PAU/@@download/ENCFF126PAU.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF072YID bigBed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF580WFC 10643327 ENCODE Processing Pipeline f131ff3851319c0c69dc2a0e62ade366 https://www.encodeproject.org/files/ENCFF072YID/@@download/ENCFF072YID.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF086KWZ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF009APP 915013 ENCODE Processing Pipeline 93b0673274c8575c3674b97ba8319fd8 https://www.encodeproject.org/files/ENCFF086KWZ/@@download/ENCFF086KWZ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF114SRD bed narrowPeak optimal idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF059UCY, ENCFF337SWA, ENCFF419RSJ, ENCFF580WFC 458272 ENCODE Processing Pipeline fecc5b9d631697532c1dae94e75eaac4 https://www.encodeproject.org/files/ENCFF114SRD/@@download/ENCFF114SRD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF064YUH bigWig signal p-value ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF500MOX 335618652 ENCODE Processing Pipeline d83a6f0a9ac97f3b3cd8101319abf3a6 https://www.encodeproject.org/files/ENCFF064YUH/@@download/ENCFF064YUH.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF771PFF bigWig fold change over control ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF500MOX 274474747 ENCODE Processing Pipeline 40853052fc10593bb0e3db5ae6513a06 https://www.encodeproject.org/files/ENCFF771PFF/@@download/ENCFF771PFF.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF551BNK bigWig signal p-value ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF933UZL 389450770 ENCODE Processing Pipeline 802579a6d353660838b4ef00eedb627f https://www.encodeproject.org/files/ENCFF551BNK/@@download/ENCFF551BNK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF149TIZ bigWig signal p-value ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492RDK, ENCFF500MOX, ENCFF675VLP, ENCFF933UZL 634108382 ENCODE Processing Pipeline 04232340fe15d4e8c872142fbc454667 https://www.encodeproject.org/files/ENCFF149TIZ/@@download/ENCFF149TIZ.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF558QKR bigWig fold change over control ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF933UZL 257010811 ENCODE Processing Pipeline 64d76f1c82147b15dedbdb09e2775dd5 https://www.encodeproject.org/files/ENCFF558QKR/@@download/ENCFF558QKR.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185AVK bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF500MOX 4595006 ENCODE Processing Pipeline a9bb763fae506572bd205f2466ddda1e https://www.encodeproject.org/files/ENCFF185AVK/@@download/ENCFF185AVK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF053ZHX bigWig fold change over control ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492RDK, ENCFF500MOX, ENCFF675VLP, ENCFF933UZL 581426474 ENCODE Processing Pipeline 92585437752f283e28f1fd60005e2aa7 https://www.encodeproject.org/files/ENCFF053ZHX/@@download/ENCFF053ZHX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381NNJ bigBed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185AVK 10628403 ENCODE Processing Pipeline 6457844473ce2af41b73904fb991dd0e https://www.encodeproject.org/files/ENCFF381NNJ/@@download/ENCFF381NNJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF680RJL bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF933UZL 4751355 ENCODE Processing Pipeline 38abeff3fc852c44aa7c49eeeadb138d https://www.encodeproject.org/files/ENCFF680RJL/@@download/ENCFF680RJL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF424TUG bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF492RDK, ENCFF500MOX, ENCFF675VLP, ENCFF933UZL 5926104 ENCODE Processing Pipeline e8371ea8f204bbba584ea839946875f0 https://www.encodeproject.org/files/ENCFF424TUG/@@download/ENCFF424TUG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF661CXB bigBed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF680RJL 10640420 ENCODE Processing Pipeline df4135c09917b8c6f777403deed12d0d https://www.encodeproject.org/files/ENCFF661CXB/@@download/ENCFF661CXB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF512TLJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF648ZNE 975098 ENCODE Processing Pipeline cdba3b190d62a61e2c07e7d028dafe12 https://www.encodeproject.org/files/ENCFF512TLJ/@@download/ENCFF512TLJ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF671RNQ bigBed narrowPeak conservative idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF537ZUK 912547 ENCODE Processing Pipeline 29537fc6d22cfaef0be4165ab30a8bcb https://www.encodeproject.org/files/ENCFF671RNQ/@@download/ENCFF671RNQ.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595FDY bigBed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF424TUG 13492027 ENCODE Processing Pipeline aca69121e85ce63c3b3d562e168b992e https://www.encodeproject.org/files/ENCFF595FDY/@@download/ENCFF595FDY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF537ZUK bed narrowPeak conservative idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF185AVK, ENCFF424TUG, ENCFF680RJL 419880 ENCODE Processing Pipeline 8e333e08c15eb6bafd356dc25e6ca6cd https://www.encodeproject.org/files/ENCFF537ZUK/@@download/ENCFF537ZUK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF648ZNE bed narrowPeak optimal idr thresholded peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF185AVK, ENCFF424TUG, ENCFF680RJL 458466 ENCODE Processing Pipeline 3e28d89d949807a1ffc27397ebde933f https://www.encodeproject.org/files/ENCFF648ZNE/@@download/ENCFF648ZNE.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001GWJ bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWW 843281218 John Stamatoyannopoulos, UW f3af5b0bb2859df1895a986686895991 https://www.encodeproject.org/files/ENCFF001GWJ/@@download/ENCFF001GWJ.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWL bigBed broadPeak hotspots ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XLT 3620450 John Stamatoyannopoulos, UW 353231b5d291c777b684249cf7450055 https://www.encodeproject.org/files/ENCFF001GWL/@@download/ENCFF001GWL.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWM bigBed broadPeak hotspots ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XLU 3244023 John Stamatoyannopoulos, UW 99f760719dfdce33dc88e0636a4cfcf6 https://www.encodeproject.org/files/ENCFF001GWM/@@download/ENCFF001GWM.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWN bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001XLV 1371986 John Stamatoyannopoulos, UW 944b856d8558fcf9a404a30b08b20c21 https://www.encodeproject.org/files/ENCFF001GWN/@@download/ENCFF001GWN.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWO bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001XLW 991881 John Stamatoyannopoulos, UW a17c10c8454f6680ebc2a0beaa698db0 https://www.encodeproject.org/files/ENCFF001GWO/@@download/ENCFF001GWO.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWP bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWV 738288567 John Stamatoyannopoulos, UW 9764bec50d7907f18b72235940b050fa https://www.encodeproject.org/files/ENCFF001GWP/@@download/ENCFF001GWP.bam hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWQ bigWig raw signal ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWJ 175266055 John Stamatoyannopoulos, UW 30fc6f2d6eb3bc2edbf384d738b5d3e5 https://www.encodeproject.org/files/ENCFF001GWQ/@@download/ENCFF001GWQ.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWS bigWig raw signal ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWP 139325265 John Stamatoyannopoulos, UW 2c0ec568b6a21638625eea7911f8c90a https://www.encodeproject.org/files/ENCFF001GWS/@@download/ENCFF001GWS.bigWig hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWV fastq reads ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 883589229 John Stamatoyannopoulos, UW 89855b4ffa4e82e153d4c8ac4733746b https://www.encodeproject.org/files/ENCFF001GWV/@@download/ENCFF001GWV.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GXE/ released control low read depth, low read length, low read depth, inconsistent platforms ENCFF001GWW fastq reads ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 36 single-ended 913447678 John Stamatoyannopoulos, UW 922e97dfbb407dfa191ba51fdfd79c2a https://www.encodeproject.org/files/ENCFF001GWW/@@download/ENCFF001GWW.fastq.gz Illumina Genome Analyzer II /files/ENCFF001GXE/ released control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XLT bed broadPeak hotspots ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWJ 2538922 John Stamatoyannopoulos, UW 595d03edf8304a184b576ae1c9781664 https://www.encodeproject.org/files/ENCFF001XLT/@@download/ENCFF001XLT.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XLU bed broadPeak hotspots ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWP 2316059 John Stamatoyannopoulos, UW 0c1158bfc6befc399c9f9dc305d9acf0 https://www.encodeproject.org/files/ENCFF001XLU/@@download/ENCFF001XLU.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XLV bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWJ 794416 John Stamatoyannopoulos, UW 3c6b5bf3eefc28b6bab4ef37916011a1 https://www.encodeproject.org/files/ENCFF001XLV/@@download/ENCFF001XLV.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF001XLW bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWP 686601 John Stamatoyannopoulos, UW 9a73acbd7472db4a7a7a0192a772fcb1 https://www.encodeproject.org/files/ENCFF001XLW/@@download/ENCFF001XLW.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF002DBW bed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 964836 ENCODE Consortium Analysis Working Group fe0348a4dfcb5662bba851d5850e871a https://www.encodeproject.org/files/ENCFF002DBW/@@download/ENCFF002DBW.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing derived_from ENCFF633CNA bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBW 2009042 ENCODE Consortium 24301099703546fcce81fbb94789e289 https://www.encodeproject.org/files/ENCFF633CNA/@@download/ENCFF633CNA.bigBed hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF684AWI bam unfiltered alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWV, ENCFF643CGH 991363113 ENCODE Processing Pipeline 3bc5543bca321f33cb806e2a1e8a2d33 https://www.encodeproject.org/files/ENCFF684AWI/@@download/ENCFF684AWI.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF811FBC bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWV, ENCFF643CGH 655468805 ENCODE Processing Pipeline 07d7b704dc8da840c712ad7bff5948d6 https://www.encodeproject.org/files/ENCFF811FBC/@@download/ENCFF811FBC.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF005GES bam unfiltered alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWW, ENCFF643CGH 1060060055 ENCODE Processing Pipeline 635d73eb324230b80bda911a7d2ad390 https://www.encodeproject.org/files/ENCFF005GES/@@download/ENCFF005GES.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF402WKZ bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWW, ENCFF643CGH 727396961 ENCODE Processing Pipeline 1f5253e10f5ad42908f16a7b382bff94 https://www.encodeproject.org/files/ENCFF402WKZ/@@download/ENCFF402WKZ.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF440JDF bam unfiltered alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWV, ENCFF807MUK 988382310 ENCODE Processing Pipeline a6b950571c3f821fc41d1afea72a7427 https://www.encodeproject.org/files/ENCFF440JDF/@@download/ENCFF440JDF.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF873WTQ bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWV, ENCFF807MUK 655734780 ENCODE Processing Pipeline 379c3b1218bfc6eafcd54f41fee9f51e https://www.encodeproject.org/files/ENCFF873WTQ/@@download/ENCFF873WTQ.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF019FFF bam unfiltered alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWW, ENCFF807MUK 1055743153 ENCODE Processing Pipeline 214418cd26d23274f2a3af6b2306a741 https://www.encodeproject.org/files/ENCFF019FFF/@@download/ENCFF019FFF.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF316KUR bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWW, ENCFF807MUK 727679421 ENCODE Processing Pipeline 2a15d94b1b3bce483d01bba1b4cefac2 https://www.encodeproject.org/files/ENCFF316KUR/@@download/ENCFF316KUR.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF962LYO bigWig signal p-value ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF402WKZ, ENCFF732CPP 363196689 ENCODE Processing Pipeline 2b96b4feb176478cb2e6f7e4a9a11ca7 https://www.encodeproject.org/files/ENCFF962LYO/@@download/ENCFF962LYO.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF119SYI bigWig signal p-value ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF732CPP, ENCFF811FBC 328332289 ENCODE Processing Pipeline 9557119f9435a68e6094f5b68fa325ca https://www.encodeproject.org/files/ENCFF119SYI/@@download/ENCFF119SYI.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF005TYT bigWig signal p-value ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF402WKZ, ENCFF732CPP, ENCFF811FBC 421710722 ENCODE Processing Pipeline ef42ff8d04eb93941be08d2c8f1b7d21 https://www.encodeproject.org/files/ENCFF005TYT/@@download/ENCFF005TYT.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF033HLZ bigWig fold change over control ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF402WKZ, ENCFF732CPP 307734760 ENCODE Processing Pipeline 9a3113a6fc01ff1c48edb098818d236b https://www.encodeproject.org/files/ENCFF033HLZ/@@download/ENCFF033HLZ.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF285QMR bigWig fold change over control ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF732CPP, ENCFF811FBC 294951174 ENCODE Processing Pipeline d39586abb51f7c034f67fb783310b752 https://www.encodeproject.org/files/ENCFF285QMR/@@download/ENCFF285QMR.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF993AJR bigWig fold change over control ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF402WKZ, ENCFF732CPP, ENCFF811FBC 509975954 ENCODE Processing Pipeline 050605fc856f9c2705c90eac8b25d320 https://www.encodeproject.org/files/ENCFF993AJR/@@download/ENCFF993AJR.bigWig GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF442AJX bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF402WKZ, ENCFF732CPP 4163156 ENCODE Processing Pipeline 03d1f220403ad59f2ce42d9cd5936fdb https://www.encodeproject.org/files/ENCFF442AJX/@@download/ENCFF442AJX.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF602PDJ bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF732CPP, ENCFF811FBC 4277026 ENCODE Processing Pipeline f0d7a263a702ebfb83a4e5837d6f0e89 https://www.encodeproject.org/files/ENCFF602PDJ/@@download/ENCFF602PDJ.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF105QGH bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF402WKZ, ENCFF732CPP, ENCFF811FBC 4728021 ENCODE Processing Pipeline f43be0c4f2d417701b592ca07fa933cc https://www.encodeproject.org/files/ENCFF105QGH/@@download/ENCFF105QGH.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF982PNF bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF442AJX 10586569 ENCODE Processing Pipeline 5716c0709167f7c333800301aa96dcbe https://www.encodeproject.org/files/ENCFF982PNF/@@download/ENCFF982PNF.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF227KFA bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF602PDJ 10551799 ENCODE Processing Pipeline 0fe6630d79722f1921efdc263866fbae https://www.encodeproject.org/files/ENCFF227KFA/@@download/ENCFF227KFA.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF208NYM bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF105QGH 11288553 ENCODE Processing Pipeline 9584c49dd22e406e4fada00c9fcf90d4 https://www.encodeproject.org/files/ENCFF208NYM/@@download/ENCFF208NYM.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF583EAI bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF788LNG 1365652 ENCODE Processing Pipeline a8ec7ee7cf4564f098705bec648b35fe https://www.encodeproject.org/files/ENCFF583EAI/@@download/ENCFF583EAI.bigBed GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF788LNG bed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF105QGH, ENCFF419RSJ, ENCFF442AJX, ENCFF602PDJ 780926 ENCODE Processing Pipeline 7f6723cd4f6db91cb57c8c40b6d5cb6d https://www.encodeproject.org/files/ENCFF788LNG/@@download/ENCFF788LNG.bed.gz GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF190YXL bigWig signal p-value ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF316KUR, ENCFF864XXG 363715289 ENCODE Processing Pipeline 2f65b441ed9fb36506c3d1b6bbe23539 https://www.encodeproject.org/files/ENCFF190YXL/@@download/ENCFF190YXL.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF715MAG bigWig fold change over control ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF316KUR, ENCFF864XXG 307940948 ENCODE Processing Pipeline 9e26b502b62d08e05b0e6c05dd18b2bb https://www.encodeproject.org/files/ENCFF715MAG/@@download/ENCFF715MAG.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF583NLL bigWig signal p-value ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF864XXG, ENCFF873WTQ 433649767 ENCODE Processing Pipeline 277b64fab2a5f22ba80b92b248305fc0 https://www.encodeproject.org/files/ENCFF583NLL/@@download/ENCFF583NLL.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF875OMI bigWig signal p-value ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF316KUR, ENCFF864XXG, ENCFF873WTQ 423174861 ENCODE Processing Pipeline 00abcaa8e12a46a3f8eb8f82ce973524 https://www.encodeproject.org/files/ENCFF875OMI/@@download/ENCFF875OMI.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF661RLA bigWig fold change over control ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF864XXG, ENCFF873WTQ 292679125 ENCODE Processing Pipeline 83a29ee461346279b00d8808f301b3d2 https://www.encodeproject.org/files/ENCFF661RLA/@@download/ENCFF661RLA.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF932MVC bigWig fold change over control ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF316KUR, ENCFF864XXG, ENCFF873WTQ 517672834 ENCODE Processing Pipeline c67cfec98c9ff99c7941886fd3d86086 https://www.encodeproject.org/files/ENCFF932MVC/@@download/ENCFF932MVC.bigWig hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF121QUN bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF316KUR, ENCFF864XXG 4166313 ENCODE Processing Pipeline 52a2e3ee1050673d3f3449527d0d40ad https://www.encodeproject.org/files/ENCFF121QUN/@@download/ENCFF121QUN.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF940KDS bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF864XXG, ENCFF873WTQ 4277579 ENCODE Processing Pipeline f0b64264e8de07915ba761ea65af7b29 https://www.encodeproject.org/files/ENCFF940KDS/@@download/ENCFF940KDS.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF709XOM bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF316KUR, ENCFF864XXG, ENCFF873WTQ 4721535 ENCODE Processing Pipeline 199d6c8df9f65d17afd45815779c7e95 https://www.encodeproject.org/files/ENCFF709XOM/@@download/ENCFF709XOM.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF143GHD bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF121QUN 10592034 ENCODE Processing Pipeline a17bfcd835a1c73185e89d0d907efea6 https://www.encodeproject.org/files/ENCFF143GHD/@@download/ENCFF143GHD.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF682BHT bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF940KDS 10553118 ENCODE Processing Pipeline dc37f59575038776fa6b84fd64e8a28c https://www.encodeproject.org/files/ENCFF682BHT/@@download/ENCFF682BHT.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF244EWW bigBed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF709XOM 11269999 ENCODE Processing Pipeline 5c06b376777af910ad8c5d47bfe28019 https://www.encodeproject.org/files/ENCFF244EWW/@@download/ENCFF244EWW.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF138PXI bed narrowPeak conservative idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF121QUN, ENCFF709XOM, ENCFF940KDS 776428 ENCODE Processing Pipeline 3bb688d80bb7d949f778b67c443848b9 https://www.encodeproject.org/files/ENCFF138PXI/@@download/ENCFF138PXI.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF584MIM bigBed narrowPeak conservative idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF138PXI 1357735 ENCODE Processing Pipeline 5d38991bc2b94d11708ff899a6239813 https://www.encodeproject.org/files/ENCFF584MIM/@@download/ENCFF584MIM.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF681OWQ bed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF001TDO, ENCFF121QUN, ENCFF709XOM, ENCFF940KDS 780687 ENCODE Processing Pipeline 9785a54dd69bb39cb46f95c625e0c1fb https://www.encodeproject.org/files/ENCFF681OWQ/@@download/ENCFF681OWQ.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF080ERB bigBed narrowPeak optimal idr thresholded peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1, 2 ENCFF681OWQ 1362228 ENCODE Processing Pipeline bf09d784a7117c1ba609e1b1275754d7 https://www.encodeproject.org/files/ENCFF080ERB/@@download/ENCFF080ERB.bigBed hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF000WTL bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 1 ENCFF000WTN 543929653 Michael Snyder, Stanford 87f7a608874d837403dbc4694904087f https://www.encodeproject.org/files/ENCFF000WTL/@@download/ENCFF000WTL.bam hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000WTM bigBed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001VGX 1421243 Michael Snyder, Stanford 06b99ac4e751b76e59850504f7dc5915 https://www.encodeproject.org/files/ENCFF000WTM/@@download/ENCFF000WTM.bigBed hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000WTN fastq reads ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1324013215 Michael Snyder, Stanford f1b5068f9c64ea253b4acddf02996f77 https://www.encodeproject.org/files/ENCFF000WTN/@@download/ENCFF000WTN.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000WTO bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 1 ENCFF000WTQ 527313120 Michael Snyder, Stanford 0cfd1d38fa020924e53e8e7149dd4327 https://www.encodeproject.org/files/ENCFF000WTO/@@download/ENCFF000WTO.bam hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000WTQ fastq reads ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 907345470 Michael Snyder, Stanford a2408b6f612f7ffe9e54ce24782171a0 https://www.encodeproject.org/files/ENCFF000WTQ/@@download/ENCFF000WTQ.fastq.gz Illumina Genome Analyzer /files/ENCFF000WUI/ released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000WTS bigWig signal ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000WTL, ENCFF000WTO 393519668 Michael Snyder, Stanford 26a7e7a253b6025485d49a7ccde1ad6f https://www.encodeproject.org/files/ENCFF000WTS/@@download/ENCFF000WTS.bigWig hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF001VGX bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000WTL, ENCFF000WTO 705057 Michael Snyder, Stanford 5ad7963ae1fcbf7125fb193b2e63b73f https://www.encodeproject.org/files/ENCFF001VGX/@@download/ENCFF001VGX.bed.gz hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF002CQZ bed narrowPeak optimal idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF000WTL, ENCFF000WTO 289621 ENCODE Consortium Analysis Working Group 9188dfc8c8f29afab3845d1a3f90b18c https://www.encodeproject.org/files/ENCFF002CQZ/@@download/ENCFF002CQZ.bed.gz hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF788YMP bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002CQZ 674930 ENCODE Consortium d8926d48b423eed210a5cf89c91a32c9 https://www.encodeproject.org/files/ENCFF788YMP/@@download/ENCFF788YMP.bigBed hg19 archived file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF968SCO bigWig signal p-value ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF578QOG, ENCFF590SUW, ENCFF599MVB 768512259 ENCODE Processing Pipeline d3fe3dce8bbc504cd2f0df88d8576eb9 https://www.encodeproject.org/files/ENCFF968SCO/@@download/ENCFF968SCO.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF578QOG bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WTQ, ENCFF807MUK 706580346 ENCODE Processing Pipeline b5a8a52e69697486d72ed68753dca47a https://www.encodeproject.org/files/ENCFF578QOG/@@download/ENCFF578QOG.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF507JNJ bam unfiltered alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WTQ, ENCFF807MUK 1038018080 ENCODE Processing Pipeline 1e8bdf9f7766a6eb48ed08e0cdb56825 https://www.encodeproject.org/files/ENCFF507JNJ/@@download/ENCFF507JNJ.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF484UMT bam unfiltered alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WTN, ENCFF807MUK 1452577354 ENCODE Processing Pipeline 989ef78533a0d996b4f2094032dba68f https://www.encodeproject.org/files/ENCFF484UMT/@@download/ENCFF484UMT.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF590SUW bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WTN, ENCFF807MUK 939659262 ENCODE Processing Pipeline be87d7e47777111679267eebcb558747 https://www.encodeproject.org/files/ENCFF590SUW/@@download/ENCFF590SUW.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF603BYA bigWig signal p-value ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF590SUW, ENCFF599MVB 576635523 ENCODE Processing Pipeline c29babdc54e11197fd0236dba9766d71 https://www.encodeproject.org/files/ENCFF603BYA/@@download/ENCFF603BYA.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF529AVR bigWig fold change over control ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF590SUW, ENCFF599MVB 484129525 ENCODE Processing Pipeline 93387a1c8aac307e43c0401fe9f49f27 https://www.encodeproject.org/files/ENCFF529AVR/@@download/ENCFF529AVR.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF716YSW bigBed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF039SJR 11305098 ENCODE Processing Pipeline 3fb0befa9fdbd560981e75292f26e1a6 https://www.encodeproject.org/files/ENCFF716YSW/@@download/ENCFF716YSW.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF239EMF bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF787WKP 323457 ENCODE Processing Pipeline dddac7fdd7e16be69114d6a3dd707a66 https://www.encodeproject.org/files/ENCFF239EMF/@@download/ENCFF239EMF.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched status, mismatched file status ENCFF188TRJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF437NSP 421365 ENCODE Processing Pipeline 0f40fdaa5adf76f56aba6d7d4e7caa51 https://www.encodeproject.org/files/ENCFF188TRJ/@@download/ENCFF188TRJ.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched status, mismatched file status ENCFF288WFI bigWig signal p-value ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF578QOG, ENCFF599MVB 551640751 ENCODE Processing Pipeline 7bfad910016f7ed01faaa203f6b44d2e https://www.encodeproject.org/files/ENCFF288WFI/@@download/ENCFF288WFI.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF039SJR bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF578QOG, ENCFF599MVB 4777767 ENCODE Processing Pipeline a708c703d30c3bf40c1e769353e5b793 https://www.encodeproject.org/files/ENCFF039SJR/@@download/ENCFF039SJR.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF939MYF bigBed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF977JIT 11688179 ENCODE Processing Pipeline dacb1e59f33ffb463b1eeaa422bf96de https://www.encodeproject.org/files/ENCFF939MYF/@@download/ENCFF939MYF.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF593AYS bigWig fold change over control ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF578QOG, ENCFF590SUW, ENCFF599MVB 755718555 ENCODE Processing Pipeline 0e05b5f27bf6424dbca7c99e32b03a29 https://www.encodeproject.org/files/ENCFF593AYS/@@download/ENCFF593AYS.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF520ZQF bigBed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF671DTY 11300391 ENCODE Processing Pipeline a275d11f85f3a92926a1ee5d02d60221 https://www.encodeproject.org/files/ENCFF520ZQF/@@download/ENCFF520ZQF.bigBed hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF646GCM bed narrowPeak optimal idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF039SJR, ENCFF671DTY, ENCFF977JIT 237494 ENCODE Processing Pipeline 108afcdf21f46b3d015de451be0f4d11 https://www.encodeproject.org/files/ENCFF646GCM/@@download/ENCFF646GCM.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF977JIT bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF578QOG, ENCFF590SUW, ENCFF599MVB 5405998 ENCODE Processing Pipeline 108e6213c25c4c4c1a43d11d9c4be7d6 https://www.encodeproject.org/files/ENCFF977JIT/@@download/ENCFF977JIT.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF283PQF bigWig fold change over control ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF578QOG, ENCFF599MVB 411443355 ENCODE Processing Pipeline 2e1dcb4337205f7b3a6daeebad0e73df https://www.encodeproject.org/files/ENCFF283PQF/@@download/ENCFF283PQF.bigWig hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF308SHU bed narrowPeak conservative idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF039SJR, ENCFF671DTY, ENCFF977JIT 163033 ENCODE Processing Pipeline 2375519955b8f18d22a4ebedf74f11f2 https://www.encodeproject.org/files/ENCFF308SHU/@@download/ENCFF308SHU.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF671DTY bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF590SUW, ENCFF599MVB 4652035 ENCODE Processing Pipeline 369e2d41cec1c265a2179f6de18d7515 https://www.encodeproject.org/files/ENCFF671DTY/@@download/ENCFF671DTY.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF702RBI bam unfiltered alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WTN, ENCFF643CGH 1458397543 ENCODE Processing Pipeline 66ad20bddedfd6814149415a00f80bd5 https://www.encodeproject.org/files/ENCFF702RBI/@@download/ENCFF702RBI.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF592QNK bam unfiltered alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WTQ, ENCFF643CGH 1042274308 ENCODE Processing Pipeline 0140cdda4d479585a30c423ab4c66b24 https://www.encodeproject.org/files/ENCFF592QNK/@@download/ENCFF592QNK.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF552FKA bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WTN, ENCFF643CGH 939327840 ENCODE Processing Pipeline 4827dac74cbdc8934b8ddee33fc72b6b https://www.encodeproject.org/files/ENCFF552FKA/@@download/ENCFF552FKA.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF641ONS bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WTQ, ENCFF643CGH 706238848 ENCODE Processing Pipeline 44f7bb5d63a662ca9846b3a6aae226e6 https://www.encodeproject.org/files/ENCFF641ONS/@@download/ENCFF641ONS.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF712NLI bigWig signal p-value ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF552FKA 664615276 ENCODE Processing Pipeline a190fa7384f8928051f089f407170e22 https://www.encodeproject.org/files/ENCFF712NLI/@@download/ENCFF712NLI.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF621MZB bigWig signal p-value ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF641ONS 539752521 ENCODE Processing Pipeline 1f434e17e91be59a93992a19b6a8a598 https://www.encodeproject.org/files/ENCFF621MZB/@@download/ENCFF621MZB.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF637DVH bigWig fold change over control ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF552FKA 482074896 ENCODE Processing Pipeline a449601cc089cc06da2cdb4d3dbb7bab https://www.encodeproject.org/files/ENCFF637DVH/@@download/ENCFF637DVH.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF436UWE bigWig signal p-value ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF513EWK, ENCFF552FKA, ENCFF641ONS 781545082 ENCODE Processing Pipeline a291fc1cf1d406baa231c36097131710 https://www.encodeproject.org/files/ENCFF436UWE/@@download/ENCFF436UWE.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF640RNH bigWig fold change over control ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF513EWK, ENCFF552FKA, ENCFF641ONS 763467172 ENCODE Processing Pipeline f12b657008982e1d3f3eadd7d76de328 https://www.encodeproject.org/files/ENCFF640RNH/@@download/ENCFF640RNH.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF407RRX bigWig fold change over control ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF513EWK, ENCFF641ONS 411294009 ENCODE Processing Pipeline b048c2c64b292a6b2215e5bbcfc9c708 https://www.encodeproject.org/files/ENCFF407RRX/@@download/ENCFF407RRX.bigWig GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF342GOJ bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF513EWK, ENCFF552FKA 4355246 ENCODE Processing Pipeline b7b50ceec0b71c7715ac5e52381fb8a1 https://www.encodeproject.org/files/ENCFF342GOJ/@@download/ENCFF342GOJ.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological 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b0ecbc3c994eb0727a73de2fe070b1f7 https://www.encodeproject.org/files/ENCFF712RIS/@@download/ENCFF712RIS.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF576VBD bigBed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF403WRI 11606159 ENCODE Processing Pipeline c150d6fbbcaaf3143a84573647cc5b5a https://www.encodeproject.org/files/ENCFF576VBD/@@download/ENCFF576VBD.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF654TPM bed narrowPeak conservative idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF308LQX, ENCFF342GOJ, ENCFF403WRI, ENCFF419RSJ 163959 ENCODE Processing Pipeline b05be3f20f845b267215a3d9be1f35c6 https://www.encodeproject.org/files/ENCFF654TPM/@@download/ENCFF654TPM.bed.gz GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF385SFC bigBed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF342GOJ 11108472 ENCODE Processing Pipeline e190024e09a90a58228f0ff274865f5a https://www.encodeproject.org/files/ENCFF385SFC/@@download/ENCFF385SFC.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF670ZWW bigBed narrowPeak conservative idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF654TPM 325259 ENCODE Processing Pipeline 81ec1d11e647198e2d7f6c079f725297 https://www.encodeproject.org/files/ENCFF670ZWW/@@download/ENCFF670ZWW.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF737JRI bigBed narrowPeak optimal idr thresholded peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF712RIS 418083 ENCODE Processing Pipeline f29d6a692644d01984fc781c9ce39b34 https://www.encodeproject.org/files/ENCFF737JRI/@@download/ENCFF737JRI.bigBed GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000ONT bigBed broadPeak peaks ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UBC 454280 Richard Myers, HAIB 2b4aaf276b2697783b1cac79087c8bc8 https://www.encodeproject.org/files/ENCFF000ONT/@@download/ENCFF000ONT.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONU bigBed broadPeak peaks ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UBD 524110 Richard Myers, HAIB 65455724df1d18eb4ea5e83fd6c7f126 https://www.encodeproject.org/files/ENCFF000ONU/@@download/ENCFF000ONU.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONV bam alignments ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OOD 1503545873 Richard Myers, HAIB 0c2f67b6616a57f676a5817aa0cfe783 https://www.encodeproject.org/files/ENCFF000ONV/@@download/ENCFF000ONV.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONW bam alignments ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OOL 1576096674 Richard Myers, HAIB 974287893d00ab60e7faac53bf5ddc50 https://www.encodeproject.org/files/ENCFF000ONW/@@download/ENCFF000ONW.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONX bigWig raw signal ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 238170344 Richard Myers, HAIB ff147e5f10b9344a5a5dec1a7e3d8303 https://www.encodeproject.org/files/ENCFF000ONX/@@download/ENCFF000ONX.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000ONY bigWig raw signal ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 249365283 Richard Myers, HAIB 3d636968311ed4f6769fbe596b8dcae8 https://www.encodeproject.org/files/ENCFF000ONY/@@download/ENCFF000ONY.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000OOD fastq reads ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1539630704 Richard Myers, HAIB 734bb3b02df34bc2307f38451eb5d447 https://www.encodeproject.org/files/ENCFF000OOD/@@download/ENCFF000OOD.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OST/ released inconsistent platforms biological replicates with identical biosample ENCFF000OOL fastq reads ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1637659071 Richard Myers, HAIB aa54c01bf6cd6e217de8750d91de9b8d https://www.encodeproject.org/files/ENCFF000OOL/@@download/ENCFF000OOL.fastq.gz Illumina HiSeq 2000 /files/ENCFF000OST/ released inconsistent platforms biological replicates with identical biosample ENCFF001UBC bed broadPeak peaks ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 1 238602 Richard Myers, HAIB 9b3959979a7f59599fd1e8718a8bff05 https://www.encodeproject.org/files/ENCFF001UBC/@@download/ENCFF001UBC.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF001UBD bed broadPeak peaks ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 1 317678 Richard Myers, HAIB e028952913bb9f1d8a2d004fa8f3fac7 https://www.encodeproject.org/files/ENCFF001UBD/@@download/ENCFF001UBD.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000ROM bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000ROU 369612806 Vishwanath Iyer, UTA 49a0bd6730c3950087edd7162a7a286d https://www.encodeproject.org/files/ENCFF000ROM/@@download/ENCFF000ROM.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000RON bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000ROZ 313793081 Vishwanath Iyer, UTA 24c25b458cd7e472af7cff89b91ce706 https://www.encodeproject.org/files/ENCFF000RON/@@download/ENCFF000RON.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROP bigWig base overlap signal ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 179749908 Vishwanath Iyer, UTA a2fc6645e422a6e460c66140efa93422 https://www.encodeproject.org/files/ENCFF000ROP/@@download/ENCFF000ROP.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROQ bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF000ROX 536609157 Vishwanath Iyer, UTA c7afb31b2e0b6a6c11c3f7f6793ff9cc https://www.encodeproject.org/files/ENCFF000ROQ/@@download/ENCFF000ROQ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROR bigBed narrowPeak peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USH 1981359 Vishwanath Iyer, UTA 14d8510b207b9c33af01a0ae03d7c0c3 https://www.encodeproject.org/files/ENCFF000ROR/@@download/ENCFF000ROR.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROT bigWig signal ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3940456239 Vishwanath Iyer, UTA 9f97e9172995f5241263237eb5e91b20 https://www.encodeproject.org/files/ENCFF000ROT/@@download/ENCFF000ROT.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from insufficient read length ENCFF000ROU fastq reads ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 358306226 Vishwanath Iyer, UTA 49d078a7cc72e52fdca9c9806c9d375f https://www.encodeproject.org/files/ENCFF000ROU/@@download/ENCFF000ROU.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROV tar validation ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 50387404 Vishwanath Iyer, UTA 6ce33a140c328e68d52bd1124d610624 https://www.encodeproject.org/files/ENCFF000ROV/@@download/ENCFF000ROV.tar.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000ROX fastq reads ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 1 33 single-ended 513185151 Vishwanath Iyer, UTA 60159eff02f764d871ed8c38882debb7 https://www.encodeproject.org/files/ENCFF000ROX/@@download/ENCFF000ROX.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROZ fastq reads ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 904880702 Vishwanath Iyer, UTA 8857dc283de4486075d9220966431943 https://www.encodeproject.org/files/ENCFF000ROZ/@@download/ENCFF000ROZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF001USH bed narrowPeak peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1311543 Vishwanath Iyer, UTA a6f856eb3742b57cd1515cf4669b620d https://www.encodeproject.org/files/ENCFF001USH/@@download/ENCFF001USH.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002DAJ bed narrowPeak optimal idr thresholded peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 943769 ENCODE Consortium Analysis Working Group f05d542a177ee7a769c68a1f4e553b67 https://www.encodeproject.org/files/ENCFF002DAJ/@@download/ENCFF002DAJ.bed.gz hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample insufficient read length ENCFF455WUJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAJ 1692231 ENCODE Consortium 82f48d37678c71616d991df451482dbb https://www.encodeproject.org/files/ENCFF455WUJ/@@download/ENCFF455WUJ.bigBed hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000QFM bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QFY 1104731999 Richard Myers, HAIB 1b02f6f4302d2d466ca2747abc203625 https://www.encodeproject.org/files/ENCFF000QFM/@@download/ENCFF000QFM.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000QFN bigBed broadPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UKZ 125019 Richard Myers, HAIB e924b8a2de2ecce4335a7f5906e6d203 https://www.encodeproject.org/files/ENCFF000QFN/@@download/ENCFF000QFN.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000QFO bigBed broadPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001ULA 377061 Richard Myers, HAIB d3003871ef08d54da2af62e02f91b0ff https://www.encodeproject.org/files/ENCFF000QFO/@@download/ENCFF000QFO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000QFP bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QGA 1389342272 Richard Myers, HAIB 69bd7e663fc080eab0918eefd926cb92 https://www.encodeproject.org/files/ENCFF000QFP/@@download/ENCFF000QFP.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000QFQ bigWig raw signal ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 16013780 Richard Myers, HAIB e5e803450632812fda3a7257ade0070f https://www.encodeproject.org/files/ENCFF000QFQ/@@download/ENCFF000QFQ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF000QFR bigWig raw signal ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 31940480 Richard Myers, HAIB ac6c43f9136a41b238d4d6bf487edd15 https://www.encodeproject.org/files/ENCFF000QFR/@@download/ENCFF000QFR.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF000QFY fastq reads ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1020121151 Richard Myers, HAIB a097769d3b4cf57bdd13e0001d0bd107 https://www.encodeproject.org/files/ENCFF000QFY/@@download/ENCFF000QFY.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000QGA fastq reads ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 1334965584 Richard Myers, HAIB 9e18df3f57739452f007b4427357a2e1 https://www.encodeproject.org/files/ENCFF000QGA/@@download/ENCFF000QGA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF001UKZ bed broadPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 1 41434 Richard Myers, HAIB 3370f7be2274c325532db967868d8f3d https://www.encodeproject.org/files/ENCFF001UKZ/@@download/ENCFF001UKZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF001ULA bed broadPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 1 211027 Richard Myers, HAIB f5e879a43aabcb257b8553eed167e53a https://www.encodeproject.org/files/ENCFF001ULA/@@download/ENCFF001ULA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient replicate concordance ENCFF002CML bed narrowPeak optimal idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 289014 ENCODE Consortium Analysis Working Group bda8755d57b4e4a73c98bd34c38c2fe1 https://www.encodeproject.org/files/ENCFF002CML/@@download/ENCFF002CML.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF141QDT bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CML 715121 ENCODE Consortium c836d6d36f60ebc89400eced6979a54f https://www.encodeproject.org/files/ENCFF141QDT/@@download/ENCFF141QDT.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF329LWM bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QFY, ENCFF643CGH 682820508 ENCODE Processing Pipeline 92f019effc0dde5f35af91880b0df07a https://www.encodeproject.org/files/ENCFF329LWM/@@download/ENCFF329LWM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF669DGA bam unfiltered alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QFY, ENCFF643CGH 1313492897 ENCODE Processing Pipeline 6aac345a8400ea0f6e28c52fd0f52532 https://www.encodeproject.org/files/ENCFF669DGA/@@download/ENCFF669DGA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF466NDO bam unfiltered alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGA, ENCFF643CGH 1696529585 ENCODE Processing Pipeline 2ad11d045fc61c2ba8aecb7f5b0819c0 https://www.encodeproject.org/files/ENCFF466NDO/@@download/ENCFF466NDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF334QAB bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGA, ENCFF643CGH 883001618 ENCODE Processing Pipeline 1f65ed54747371e6c05b24bdfe31b8ce https://www.encodeproject.org/files/ENCFF334QAB/@@download/ENCFF334QAB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF205GHW bam unfiltered alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QFY, ENCFF807MUK 1308334504 ENCODE Processing Pipeline 0867a364871de94c1e6b54f7e5fe4ef7 https://www.encodeproject.org/files/ENCFF205GHW/@@download/ENCFF205GHW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF154ZWB bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QFY, ENCFF807MUK 683210409 ENCODE Processing Pipeline 05350367f4c464957b7b82f236fb87c8 https://www.encodeproject.org/files/ENCFF154ZWB/@@download/ENCFF154ZWB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF125VLH bam unfiltered alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGA, ENCFF807MUK 1691121889 ENCODE Processing Pipeline 5bdd7fbc9afa63a18ea6e703a0c4f8fd https://www.encodeproject.org/files/ENCFF125VLH/@@download/ENCFF125VLH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF696ANF bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGA, ENCFF807MUK 883557406 ENCODE Processing Pipeline 24250ac6c243fb14a61fb296bafc051d https://www.encodeproject.org/files/ENCFF696ANF/@@download/ENCFF696ANF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF315OMI bigWig signal p-value ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF329LWM, ENCFF772PJM 214954553 ENCODE Processing Pipeline bacd841501d5ff6f04d36b7cbb8a11d3 https://www.encodeproject.org/files/ENCFF315OMI/@@download/ENCFF315OMI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF665IPD bigWig signal p-value ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF329LWM, ENCFF334QAB, ENCFF772PJM 182538061 ENCODE Processing Pipeline fcbc63750bd2ccd3a13a4b47deea7b97 https://www.encodeproject.org/files/ENCFF665IPD/@@download/ENCFF665IPD.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF175ESY bigWig fold change over control ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334QAB, ENCFF772PJM 309837765 ENCODE Processing Pipeline 06a7917fb60d2c46bbe2d153951eea9a https://www.encodeproject.org/files/ENCFF175ESY/@@download/ENCFF175ESY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF876MPC bigWig fold change over control ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF329LWM, ENCFF334QAB, ENCFF772PJM 507313232 ENCODE Processing Pipeline e27837e31b6377fd14b6be7cac8640c0 https://www.encodeproject.org/files/ENCFF876MPC/@@download/ENCFF876MPC.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF566ABE bigWig signal p-value ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334QAB, ENCFF772PJM 192662146 ENCODE Processing Pipeline e9b694cc18aa320a77b1dbd8baf797fc https://www.encodeproject.org/files/ENCFF566ABE/@@download/ENCFF566ABE.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF397MIK bigWig fold change over control ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF329LWM, ENCFF772PJM 255098544 ENCODE Processing Pipeline 2fb256e06c1e112c73778eea1bbcb0ce https://www.encodeproject.org/files/ENCFF397MIK/@@download/ENCFF397MIK.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF472UBP bigBed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF628XGA 291649 ENCODE Processing Pipeline b1e80c18d4b9a0afdbde0d7695aea2d9 https://www.encodeproject.org/files/ENCFF472UBP/@@download/ENCFF472UBP.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF643PFS bed narrowPeak conservative idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF628XGA, ENCFF740XTI, ENCFF966MTK 12457 ENCODE Processing Pipeline 8d04c895e8b5b66b9d80aae8eea917f7 https://www.encodeproject.org/files/ENCFF643PFS/@@download/ENCFF643PFS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF740XTI bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334QAB, ENCFF772PJM 4403214 ENCODE Processing Pipeline 74fbc7e9392c031558a90301479c9a20 https://www.encodeproject.org/files/ENCFF740XTI/@@download/ENCFF740XTI.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF628XGA bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF329LWM, ENCFF772PJM 89962 ENCODE Processing Pipeline e355484f1860478019b7368c7c5c6d76 https://www.encodeproject.org/files/ENCFF628XGA/@@download/ENCFF628XGA.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF941WGF bigBed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF740XTI 10205700 ENCODE Processing Pipeline b1b06e36507075e27a40f79f77cb1a32 https://www.encodeproject.org/files/ENCFF941WGF/@@download/ENCFF941WGF.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF407VGB bed narrowPeak optimal idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF628XGA, ENCFF740XTI, ENCFF966MTK 35624 ENCODE Processing Pipeline 65f6f45f8f01ff27847c8d1f175cddb6 https://www.encodeproject.org/files/ENCFF407VGB/@@download/ENCFF407VGB.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF966MTK bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF329LWM, ENCFF334QAB, ENCFF772PJM 4833456 ENCODE Processing Pipeline daa8283138c35cb43f1d943295216391 https://www.encodeproject.org/files/ENCFF966MTK/@@download/ENCFF966MTK.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF088UIB bigBed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF966MTK 10868402 ENCODE Processing Pipeline 1468a495cbe6194298810bdc04924e7f https://www.encodeproject.org/files/ENCFF088UIB/@@download/ENCFF088UIB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF569YSW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF643PFS 64276 ENCODE Processing Pipeline 5b8ec5882127f862ad4de3b9ba733dc9 https://www.encodeproject.org/files/ENCFF569YSW/@@download/ENCFF569YSW.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF518BUB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF407VGB 113786 ENCODE Processing Pipeline 6d699ff8bdf203c127987f46819cf878 https://www.encodeproject.org/files/ENCFF518BUB/@@download/ENCFF518BUB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF308MNN bigWig signal p-value ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154ZWB, ENCFF750MIM 215013281 ENCODE Processing Pipeline 1674ae8bae6a4b12841b28bc1deabc2a https://www.encodeproject.org/files/ENCFF308MNN/@@download/ENCFF308MNN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF412DAN bigWig fold change over control ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154ZWB, ENCFF750MIM 255203697 ENCODE Processing Pipeline 88fe3b5f2653d1fcaf5004d421d9c991 https://www.encodeproject.org/files/ENCFF412DAN/@@download/ENCFF412DAN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF273XIF bigWig signal p-value ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF696ANF, ENCFF750MIM 192135413 ENCODE Processing Pipeline 16bab305c06e3a315f4e041efbc04fe1 https://www.encodeproject.org/files/ENCFF273XIF/@@download/ENCFF273XIF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF300XWN bigWig signal p-value ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154ZWB, ENCFF696ANF, ENCFF750MIM 182560135 ENCODE Processing Pipeline 0c13f03c7b0e7afef64559ec69833281 https://www.encodeproject.org/files/ENCFF300XWN/@@download/ENCFF300XWN.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF937FEX bigWig fold change over control ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF696ANF, ENCFF750MIM 309674468 ENCODE Processing Pipeline b82212f41b17a2182ea60eeb11187ba3 https://www.encodeproject.org/files/ENCFF937FEX/@@download/ENCFF937FEX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF520DLY bigWig fold change over control ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154ZWB, ENCFF696ANF, ENCFF750MIM 507817264 ENCODE Processing Pipeline e5dac1cfa7727836632442294aa69e03 https://www.encodeproject.org/files/ENCFF520DLY/@@download/ENCFF520DLY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF562KJJ bigBed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF638TWN 293307 ENCODE Processing Pipeline 422a20aec7ab7bac87b680f0281f9c6d https://www.encodeproject.org/files/ENCFF562KJJ/@@download/ENCFF562KJJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF128YRA bigBed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF701TJB 10808690 ENCODE Processing Pipeline 911a8cf6c626195befcd2d35011bd9d1 https://www.encodeproject.org/files/ENCFF128YRA/@@download/ENCFF128YRA.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF638TWN bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154ZWB, ENCFF750MIM 90874 ENCODE Processing Pipeline c715cc4d1528dbbe6f962990cf69f86a https://www.encodeproject.org/files/ENCFF638TWN/@@download/ENCFF638TWN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF453GLP bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF696ANF, ENCFF750MIM 4405161 ENCODE Processing Pipeline 51309dfc21ce52b1d5332ff936e37bda https://www.encodeproject.org/files/ENCFF453GLP/@@download/ENCFF453GLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF701TJB bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154ZWB, ENCFF696ANF, ENCFF750MIM 4769264 ENCODE Processing Pipeline cf762b5e0bd7400d736a250250fb7ef8 https://www.encodeproject.org/files/ENCFF701TJB/@@download/ENCFF701TJB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF736XYI bigBed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF453GLP 10201442 ENCODE Processing Pipeline 2000bdbce0aca6b8e44785b9c5be8c5b https://www.encodeproject.org/files/ENCFF736XYI/@@download/ENCFF736XYI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF490VNU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF803COK 111167 ENCODE Processing Pipeline adc1cdc9add593b85e7f45dc1f9ce5ba https://www.encodeproject.org/files/ENCFF490VNU/@@download/ENCFF490VNU.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF210HYN bed narrowPeak conservative idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF453GLP, ENCFF638TWN, ENCFF701TJB 12784 ENCODE Processing Pipeline 7a98224127440b9ae58d8bcf2f1e48ab https://www.encodeproject.org/files/ENCFF210HYN/@@download/ENCFF210HYN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF305YPY bigBed narrowPeak conservative idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF210HYN 64719 ENCODE Processing Pipeline da14d59ba1aab912c1bd7ca86cb6a6a4 https://www.encodeproject.org/files/ENCFF305YPY/@@download/ENCFF305YPY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF803COK bed narrowPeak optimal idr thresholded peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF453GLP, ENCFF638TWN, ENCFF701TJB 33975 ENCODE Processing Pipeline e601678321e35fd0a4da40e7902d95c4 https://www.encodeproject.org/files/ENCFF803COK/@@download/ENCFF803COK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RPA bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RPI 653932815 Vishwanath Iyer, UTA 5aca492cee5a348430c7d65f0bec5adc https://www.encodeproject.org/files/ENCFF000RPA/@@download/ENCFF000RPA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPC bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RPL 720532651 Vishwanath Iyer, UTA ee515d05481406ce25952295920c986d https://www.encodeproject.org/files/ENCFF000RPC/@@download/ENCFF000RPC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPD bigWig base overlap signal ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 186937093 Vishwanath Iyer, UTA 759f21263591ed1916db81b7d426ddde https://www.encodeproject.org/files/ENCFF000RPD/@@download/ENCFF000RPD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPE bigBed narrowPeak peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF001USI 3627971 Vishwanath Iyer, UTA a8bbdbefa3ab312c69f8528c39677561 https://www.encodeproject.org/files/ENCFF000RPE/@@download/ENCFF000RPE.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPF bigWig signal ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2170631907 Vishwanath Iyer, UTA 216df87085ad3667fe9963c01f4a0756 https://www.encodeproject.org/files/ENCFF000RPF/@@download/ENCFF000RPF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPG tar validation ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 50438662 Vishwanath Iyer, UTA 2be0fbf348e706ba4862cc72c5df2a13 https://www.encodeproject.org/files/ENCFF000RPG/@@download/ENCFF000RPG.tar.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPI fastq reads ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 1 33 single-ended 767098314 Vishwanath Iyer, UTA 284e70e9916c0b35a8340784d8e08238 https://www.encodeproject.org/files/ENCFF000RPI/@@download/ENCFF000RPI.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPL fastq reads ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 1 36 single-ended 668605348 Vishwanath Iyer, UTA 7dc1d7dbf009327e1344261758218e3e https://www.encodeproject.org/files/ENCFF000RPL/@@download/ENCFF000RPL.fastq.gz Illumina Genome Analyzer /files/ENCFF000RPB/ released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth, inconsistent control read length, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF001USI bed narrowPeak peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2103751 Vishwanath Iyer, UTA 15373f463f3d6821047e8a4167a978c1 https://www.encodeproject.org/files/ENCFF001USI/@@download/ENCFF001USI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths missing derived_from, biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF002DAK bed narrowPeak optimal idr thresholded peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 330987 ENCODE Consortium Analysis Working Group 92626e5c67bb02c63d3fa5cdfdfe2715 https://www.encodeproject.org/files/ENCFF002DAK/@@download/ENCFF002DAK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF071AIX bigBed narrowPeak optimal idr thresholded peaks ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DAK 895820 ENCODE Consortium 1442e680753a0b159c479c9bac9b94e3 https://www.encodeproject.org/files/ENCFF071AIX/@@download/ENCFF071AIX.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF960TLC bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF643CGH 938918999 ENCODE Processing Pipeline ec11358963012d083d8b5c2b1f08c896 https://www.encodeproject.org/files/ENCFF960TLC/@@download/ENCFF960TLC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF673EZL bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF807MUK 887582478 ENCODE Processing Pipeline 5f1bdf1d72985666a137a1cbca55a6ae https://www.encodeproject.org/files/ENCFF673EZL/@@download/ENCFF673EZL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF769YCE bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF807MUK 934321357 ENCODE Processing Pipeline cee9b5464e57b77fa3ef136dcc7b9629 https://www.encodeproject.org/files/ENCFF769YCE/@@download/ENCFF769YCE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF463PMP bam unfiltered alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF643CGH 889070687 ENCODE Processing Pipeline af73fe9170270de317d00d07fec2370c https://www.encodeproject.org/files/ENCFF463PMP/@@download/ENCFF463PMP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF430LDQ bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF643CGH 586587302 ENCODE Processing Pipeline b559a090185dd2dc186a2b17b75be89d https://www.encodeproject.org/files/ENCFF430LDQ/@@download/ENCFF430LDQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF409FBN bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF807MUK 299220233 ENCODE Processing Pipeline aeaa487ce800dcae03e49b44b51189df https://www.encodeproject.org/files/ENCFF409FBN/@@download/ENCFF409FBN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF173NYU bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF643CGH 299221163 ENCODE Processing Pipeline 345d025ba60e078b33128019623a6cff https://www.encodeproject.org/files/ENCFF173NYU/@@download/ENCFF173NYU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF004NVG bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF807MUK 585962741 ENCODE Processing Pipeline f29a64e4afe80e2e71369df5585239c3 https://www.encodeproject.org/files/ENCFF004NVG/@@download/ENCFF004NVG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000ZPT bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 1 738016257 Peggy Farnham, USC 8379fd9a55b7a946a9be1ef169f4fdab https://www.encodeproject.org/files/ENCFF000ZPT/@@download/ENCFF000ZPT.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000ZPV bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VQW 3688651 Peggy Farnham, USC 802f1dbe14cc745476a9a8a8119a51ee https://www.encodeproject.org/files/ENCFF000ZPV/@@download/ENCFF000ZPV.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000ZPW fastq reads ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 1 36 single-ended 1429421439 Peggy Farnham, USC 6159780462d7404c99ac8be1132d2a04 https://www.encodeproject.org/files/ENCFF000ZPW/@@download/ENCFF000ZPW.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZSI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000ZPX bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 1 549757365 Peggy Farnham, USC d0f36297b0bbeea62d901aad32103495 https://www.encodeproject.org/files/ENCFF000ZPX/@@download/ENCFF000ZPX.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF000ZPZ fastq reads ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 1 36 single-ended 1136881273 Peggy Farnham, USC db6bc1589b9332fb440ab7915664bebd https://www.encodeproject.org/files/ENCFF000ZPZ/@@download/ENCFF000ZPZ.fastq.gz Illumina Genome Analyzer /files/ENCFF000ZSI/ released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000ZQB bigWig signal ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 428670331 Peggy Farnham, USC 1705aa422f36a955791eb952b9eb1633 https://www.encodeproject.org/files/ENCFF000ZQB/@@download/ENCFF000ZQB.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001VQW bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1798391 Peggy Farnham, USC 7c033e264d78c2803d253a9c422fdb92 https://www.encodeproject.org/files/ENCFF001VQW/@@download/ENCFF001VQW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF002DAA bed narrowPeak optimal idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 377422 ENCODE Consortium Analysis Working Group cf3f4c61f56f1eb7476f8b52534291a5 https://www.encodeproject.org/files/ENCFF002DAA/@@download/ENCFF002DAA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF032LZO bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE ENCFF002DAA 900812 ENCODE Consortium 01a4e06c51bf3398a9b748cefaab7fc3 https://www.encodeproject.org/files/ENCFF032LZO/@@download/ENCFF032LZO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF248TCM bam unfiltered alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZPZ, ENCFF643CGH 1246721835 ENCODE Processing Pipeline 0d6f85b27afb5075f2e314505655d5c7 https://www.encodeproject.org/files/ENCFF248TCM/@@download/ENCFF248TCM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF545GLE bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZPZ, ENCFF643CGH 721752667 ENCODE Processing Pipeline 3a1f7f4ef370a40675701cfa5dbc9721 https://www.encodeproject.org/files/ENCFF545GLE/@@download/ENCFF545GLE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF757VQN bam unfiltered alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPW, ENCFF643CGH 1568603658 ENCODE Processing Pipeline 70dedddec9fc02078ac12290b4671ddd https://www.encodeproject.org/files/ENCFF757VQN/@@download/ENCFF757VQN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF318YMR bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPW, ENCFF643CGH 950489811 ENCODE Processing Pipeline 402ec21eb695a30a6de20ab93c770bed https://www.encodeproject.org/files/ENCFF318YMR/@@download/ENCFF318YMR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF047QGO bam unfiltered alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZPZ, ENCFF807MUK 1240582334 ENCODE Processing Pipeline eeb3457627fb0f754ccae32a5359cd4f https://www.encodeproject.org/files/ENCFF047QGO/@@download/ENCFF047QGO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF549WCZ bam unfiltered alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPW, ENCFF807MUK 1563126250 ENCODE Processing Pipeline 3fc5f013e398a7e681295023c3479d38 https://www.encodeproject.org/files/ENCFF549WCZ/@@download/ENCFF549WCZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF898BAG bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZPZ, ENCFF807MUK 721893184 ENCODE Processing Pipeline 88674113695f4fc36fbd127fc01df388 https://www.encodeproject.org/files/ENCFF898BAG/@@download/ENCFF898BAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF673XHO bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPW, ENCFF807MUK 950581125 ENCODE Processing Pipeline 2fe3d5e16db415d8adf3e83bd65ffe21 https://www.encodeproject.org/files/ENCFF673XHO/@@download/ENCFF673XHO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF977MNX bigWig signal p-value ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF318YMR, ENCFF530TVV 650551371 ENCODE Processing Pipeline a12eca1fe772203d78adb3d066267448 https://www.encodeproject.org/files/ENCFF977MNX/@@download/ENCFF977MNX.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF304QKH bigWig signal p-value ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF530TVV, ENCFF545GLE 464362536 ENCODE Processing Pipeline fbce535cd78a8cf749d82a0211e2a242 https://www.encodeproject.org/files/ENCFF304QKH/@@download/ENCFF304QKH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF389ULO bigWig signal p-value ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318YMR, ENCFF530TVV, ENCFF545GLE 743789708 ENCODE Processing Pipeline a4261b220dbb0f0a0af55642f98f1f7a https://www.encodeproject.org/files/ENCFF389ULO/@@download/ENCFF389ULO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF934YTG bigWig fold change over control ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF318YMR, ENCFF530TVV 561612360 ENCODE Processing Pipeline 7178efc437b180756da6cc4537c99bd1 https://www.encodeproject.org/files/ENCFF934YTG/@@download/ENCFF934YTG.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF962SPQ bigWig fold change over control ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318YMR, ENCFF530TVV, ENCFF545GLE 812150562 ENCODE Processing Pipeline 57f560e47ea120b6bc9c8d1dae419b5c https://www.encodeproject.org/files/ENCFF962SPQ/@@download/ENCFF962SPQ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF842YCO bigWig fold change over control ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF530TVV, ENCFF545GLE 453600371 ENCODE Processing Pipeline 23f2c6e5494e6c43822a0cb685279675 https://www.encodeproject.org/files/ENCFF842YCO/@@download/ENCFF842YCO.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF925XNN bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF508HKR 13207709 ENCODE Processing Pipeline 8f182375ac2b4ca7878cea870329b401 https://www.encodeproject.org/files/ENCFF925XNN/@@download/ENCFF925XNN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF129TKF bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF530TVV, ENCFF545GLE 5085639 ENCODE Processing Pipeline ec80f1ea19733205badd53e2ab2a959a https://www.encodeproject.org/files/ENCFF129TKF/@@download/ENCFF129TKF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF508HKR bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF318YMR, ENCFF530TVV 5912842 ENCODE Processing Pipeline b4f997254a1d03388dc0d89da55e87d7 https://www.encodeproject.org/files/ENCFF508HKR/@@download/ENCFF508HKR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF882MPZ bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF129TKF 11047454 ENCODE Processing Pipeline 3311b16fb058e2089adfefedea489f15 https://www.encodeproject.org/files/ENCFF882MPZ/@@download/ENCFF882MPZ.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF708AIT bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF684MET 13130382 ENCODE Processing Pipeline a0cc39f2c75f335fdfa9af7001f56e79 https://www.encodeproject.org/files/ENCFF708AIT/@@download/ENCFF708AIT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF626MUS bed narrowPeak optimal idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129TKF, ENCFF419RSJ, ENCFF508HKR, ENCFF684MET 343622 ENCODE Processing Pipeline b52d57c6066550e03cae6282d2f4d28b https://www.encodeproject.org/files/ENCFF626MUS/@@download/ENCFF626MUS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF684MET bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318YMR, ENCFF530TVV, ENCFF545GLE 6347296 ENCODE Processing Pipeline f3873d2dd2bff03983905ccd9bcb1357 https://www.encodeproject.org/files/ENCFF684MET/@@download/ENCFF684MET.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF927ROY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF452QMO 719139 ENCODE Processing Pipeline 63b975c7cbbef191dcbcd3893920e823 https://www.encodeproject.org/files/ENCFF927ROY/@@download/ENCFF927ROY.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF452QMO bed narrowPeak conservative idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF129TKF, ENCFF419RSJ, ENCFF508HKR, ENCFF684MET 328186 ENCODE Processing Pipeline c24c2f7b32a60bf54b7290b6bcf840ea https://www.encodeproject.org/files/ENCFF452QMO/@@download/ENCFF452QMO.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF376JTS bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF626MUS 749380 ENCODE Processing Pipeline 4205eb0a9907040e0057e0314d3dff5f https://www.encodeproject.org/files/ENCFF376JTS/@@download/ENCFF376JTS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF343YDX bigWig signal p-value ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF610BER, ENCFF673XHO, ENCFF898BAG 743969105 ENCODE Processing Pipeline 6cfe983957ab3d8d923050a3706f5bf3 https://www.encodeproject.org/files/ENCFF343YDX/@@download/ENCFF343YDX.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF031YGO bigWig fold change over control ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF610BER, ENCFF673XHO, ENCFF898BAG 812921924 ENCODE Processing Pipeline 0495cd315a4cda5f5032afff335877cf https://www.encodeproject.org/files/ENCFF031YGO/@@download/ENCFF031YGO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF601TVP bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF673XHO 5912551 ENCODE Processing Pipeline ea1611741594dfc77aba448abcf46d25 https://www.encodeproject.org/files/ENCFF601TVP/@@download/ENCFF601TVP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF039BIV bigWig signal p-value ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF610BER, ENCFF898BAG 488864039 ENCODE Processing Pipeline 78bce40ebbfea14d6dbef922c1b52514 https://www.encodeproject.org/files/ENCFF039BIV/@@download/ENCFF039BIV.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF466UHW bigWig signal p-value ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF673XHO 536597114 ENCODE Processing Pipeline 9b1c0fdf0d145775c47b45f296a702d5 https://www.encodeproject.org/files/ENCFF466UHW/@@download/ENCFF466UHW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF951FEY bigWig fold change over control ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF673XHO 557219670 ENCODE Processing Pipeline d0707114b334b40062f2ed62e9301b18 https://www.encodeproject.org/files/ENCFF951FEY/@@download/ENCFF951FEY.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF991ZKB bed narrowPeak conservative idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF272ARC, ENCFF601TVP, ENCFF646DRT 328269 ENCODE Processing Pipeline bb727ae5f8bef2835c41c3d4366db748 https://www.encodeproject.org/files/ENCFF991ZKB/@@download/ENCFF991ZKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF883DDY bigBed narrowPeak conservative idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF991ZKB 719335 ENCODE Processing Pipeline c740b5d49735c7d337d0860d359560ac https://www.encodeproject.org/files/ENCFF883DDY/@@download/ENCFF883DDY.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF562VGG bigWig fold change over control ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF610BER, ENCFF898BAG 453863579 ENCODE Processing Pipeline 6c938ddcfb5226e70575f0b73f5eada4 https://www.encodeproject.org/files/ENCFF562VGG/@@download/ENCFF562VGG.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF277UYN bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF601TVP 13205739 ENCODE Processing Pipeline da15a19ef3eb586e79e0b7977535f3e3 https://www.encodeproject.org/files/ENCFF277UYN/@@download/ENCFF277UYN.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF646DRT bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF610BER, ENCFF898BAG 5095276 ENCODE Processing Pipeline 2802d759fa459b435e634f07e02dd257 https://www.encodeproject.org/files/ENCFF646DRT/@@download/ENCFF646DRT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF272ARC bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF610BER, ENCFF673XHO, ENCFF898BAG 6348443 ENCODE Processing Pipeline cfd60eb54627251c95dcf93e7c72c3e4 https://www.encodeproject.org/files/ENCFF272ARC/@@download/ENCFF272ARC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF554EVL bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF646DRT 11050517 ENCODE Processing Pipeline 3ea95c2f3d71f040b2cf72bb4838ceaa https://www.encodeproject.org/files/ENCFF554EVL/@@download/ENCFF554EVL.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF518OOC bigBed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF272ARC 13128836 ENCODE Processing Pipeline e77de312c660e49b8b7b0b1995f9c5a9 https://www.encodeproject.org/files/ENCFF518OOC/@@download/ENCFF518OOC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF269JRM bed narrowPeak optimal idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF272ARC, ENCFF601TVP, ENCFF646DRT 345418 ENCODE Processing Pipeline 3ab06a65b20e88ae95e4e386e2a9a886 https://www.encodeproject.org/files/ENCFF269JRM/@@download/ENCFF269JRM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF936ENW bigBed narrowPeak optimal idr thresholded peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF269JRM 752172 ENCODE Processing Pipeline 071d34d01369d831957508cde8de498d https://www.encodeproject.org/files/ENCFF936ENW/@@download/ENCFF936ENW.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000OKP bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OLB 739289838 Richard Myers, HAIB 460c28a1966d963e8d6be6a72f699904 https://www.encodeproject.org/files/ENCFF000OKP/@@download/ENCFF000OKP.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OKQ bigBed broadPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UAK 1196049 Richard Myers, HAIB 7138d9d591eacb233565927d9d2ad909 https://www.encodeproject.org/files/ENCFF000OKQ/@@download/ENCFF000OKQ.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OKR bigBed broadPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UAL 1169973 Richard Myers, HAIB 7d750a7271416aa8cb7c8597d2118f0c https://www.encodeproject.org/files/ENCFF000OKR/@@download/ENCFF000OKR.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OKS bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OLD 890027103 Richard Myers, HAIB 71161f1ffd2a23989d8da013a6f2a282 https://www.encodeproject.org/files/ENCFF000OKS/@@download/ENCFF000OKS.bam hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OKV bigWig raw signal ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF000OKP 32282124 Richard Myers, HAIB 25163df196e8f148dd31679524b5c378 https://www.encodeproject.org/files/ENCFF000OKV/@@download/ENCFF000OKV.bigWig hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OKW bigWig raw signal ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF000OKS 39588222 Richard Myers, HAIB b9a004f1082f7e15453fd6f58061c6f6 https://www.encodeproject.org/files/ENCFF000OKW/@@download/ENCFF000OKW.bigWig hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OLB fastq reads ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 948955127 Richard Myers, HAIB 67d05368e3c8ac6c1d9fd5031a559047 https://www.encodeproject.org/files/ENCFF000OLB/@@download/ENCFF000OLB.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLW/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000OLD fastq reads ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 910168970 Richard Myers, HAIB ccebd6ca4cc4b8c9bc7a23652e44bfcd https://www.encodeproject.org/files/ENCFF000OLD/@@download/ENCFF000OLD.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000OLW/ released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF001UAK bed broadPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF000OKP 629757 Richard Myers, HAIB 861fa4afce5b8c6d73fd0d11b50d1eac https://www.encodeproject.org/files/ENCFF001UAK/@@download/ENCFF001UAK.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF001UAL bed broadPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF000OKS 619388 Richard Myers, HAIB 46525140928bb9219d933abb3506e96f https://www.encodeproject.org/files/ENCFF001UAL/@@download/ENCFF001UAL.bed.gz hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF002CIN bed narrowPeak optimal idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 364520 ENCODE Consortium Analysis Working Group a23515b20a50e28b6eea4bb5a2cd1168 https://www.encodeproject.org/files/ENCFF002CIN/@@download/ENCFF002CIN.bed.gz hg19 archived control low read depth, low read length, low read depth missing derived_from, biological replicates with identical biosample ENCFF190WTA bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CIN 894675 ENCODE Consortium 7bc72eddfc7898b15defb766b06d64fd https://www.encodeproject.org/files/ENCFF190WTA/@@download/ENCFF190WTA.bigBed hg19 archived control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF449ZGE bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLB, ENCFF643CGH 530038680 ENCODE Processing Pipeline dc45a3930bf160f7e5ecd00276c927f6 https://www.encodeproject.org/files/ENCFF449ZGE/@@download/ENCFF449ZGE.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF275YFP bam unfiltered alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLB, ENCFF643CGH 1155277386 ENCODE Processing Pipeline df96f1e5881fc5df47d0b07d3693f827 https://www.encodeproject.org/files/ENCFF275YFP/@@download/ENCFF275YFP.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF060BGI bam unfiltered alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLD, ENCFF643CGH 1162653461 ENCODE Processing Pipeline b698c74560495f3b7270ae90dfc6d2b0 https://www.encodeproject.org/files/ENCFF060BGI/@@download/ENCFF060BGI.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF392PMX bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLD, ENCFF643CGH 724966904 ENCODE Processing Pipeline f07d1926c2f95cecabbfb7c8c2e781e2 https://www.encodeproject.org/files/ENCFF392PMX/@@download/ENCFF392PMX.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF175MGW bam unfiltered alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLB, ENCFF807MUK 1153689268 ENCODE Processing Pipeline bf22b3cf8a30b15abdc878c3cef35684 https://www.encodeproject.org/files/ENCFF175MGW/@@download/ENCFF175MGW.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF267TLE bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLB, ENCFF807MUK 527290791 ENCODE Processing Pipeline 7529192b314c72ac21b040e20a5a67ef https://www.encodeproject.org/files/ENCFF267TLE/@@download/ENCFF267TLE.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF471ELF bam unfiltered alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLD, ENCFF807MUK 1162697912 ENCODE Processing Pipeline c9bf94b97afda1d8c068bd567979b960 https://www.encodeproject.org/files/ENCFF471ELF/@@download/ENCFF471ELF.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF372NSY bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLD, ENCFF807MUK 717760471 ENCODE Processing Pipeline 91ffa16adb00261b914dbe5ae7315e7e https://www.encodeproject.org/files/ENCFF372NSY/@@download/ENCFF372NSY.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF543QDS bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF267TLE, ENCFF671VNQ 6083883 ENCODE Processing Pipeline 7fcc09f4a892823e19ab94a20f075c45 https://www.encodeproject.org/files/ENCFF543QDS/@@download/ENCFF543QDS.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF430MIT bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372NSY, ENCFF671VNQ 6352567 ENCODE Processing Pipeline c70736f8d80e28fc79b8d0957d92645b https://www.encodeproject.org/files/ENCFF430MIT/@@download/ENCFF430MIT.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF607DET bigWig signal p-value ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF392PMX, ENCFF860NWP 315726953 ENCODE Processing Pipeline 326323e1dc512003efabb10c649ce41e https://www.encodeproject.org/files/ENCFF607DET/@@download/ENCFF607DET.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF515RRG bigWig signal p-value ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF267TLE, ENCFF671VNQ 279179527 ENCODE Processing Pipeline 2aa0599a70575ea730b34c12075f5c4d https://www.encodeproject.org/files/ENCFF515RRG/@@download/ENCFF515RRG.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF970JDX bigWig fold change over control ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF267TLE, ENCFF372NSY, ENCFF671VNQ 367495110 ENCODE Processing Pipeline b7acf3b579d0666b45c71cff4741cc4a https://www.encodeproject.org/files/ENCFF970JDX/@@download/ENCFF970JDX.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF871AAI bigBed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF543QDS 11617357 ENCODE Processing Pipeline c0b9cb3a029f2d4ebe8d7c9c7881c4f7 https://www.encodeproject.org/files/ENCFF871AAI/@@download/ENCFF871AAI.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF387PIC bigWig fold change over control ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF392PMX, ENCFF860NWP 257389105 ENCODE Processing Pipeline 009a44944137db32a88f824498fc4467 https://www.encodeproject.org/files/ENCFF387PIC/@@download/ENCFF387PIC.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF270QSP bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF392PMX, ENCFF860NWP 6501545 ENCODE Processing Pipeline 77eb0a84dc9d81dcca143c52d1fc7c0d https://www.encodeproject.org/files/ENCFF270QSP/@@download/ENCFF270QSP.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF693CVG bigWig signal p-value ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF267TLE, ENCFF372NSY, ENCFF671VNQ 300135640 ENCODE Processing Pipeline 1e518c4d8346bfcd984c7812992b2b3d https://www.encodeproject.org/files/ENCFF693CVG/@@download/ENCFF693CVG.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF635IUV bigWig signal p-value ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF449ZGE, ENCFF860NWP 276550445 ENCODE Processing Pipeline 90958009247ae0300527305062544bcb https://www.encodeproject.org/files/ENCFF635IUV/@@download/ENCFF635IUV.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF647NER bigWig fold change over control ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372NSY, ENCFF671VNQ 252826208 ENCODE Processing Pipeline a6283af47d8d61de198060d2f121576e https://www.encodeproject.org/files/ENCFF647NER/@@download/ENCFF647NER.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF249RDV bigWig signal p-value ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF392PMX, ENCFF449ZGE, ENCFF860NWP 300634898 ENCODE Processing Pipeline 4fbccb6571cd4259492a609c868772e7 https://www.encodeproject.org/files/ENCFF249RDV/@@download/ENCFF249RDV.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF581BJH bigBed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF430MIT 11920930 ENCODE Processing Pipeline 7ebeca540358f7f0091a73dc5ef92da0 https://www.encodeproject.org/files/ENCFF581BJH/@@download/ENCFF581BJH.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF847PLW bed narrowPeak conservative idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF400PXF, ENCFF430MIT, ENCFF543QDS 445188 ENCODE Processing Pipeline ac220d6b8f004c2e6d3b9cb3854e234e https://www.encodeproject.org/files/ENCFF847PLW/@@download/ENCFF847PLW.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF366RSZ bigWig fold change over control ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF267TLE, ENCFF671VNQ 173533751 ENCODE Processing Pipeline 204b5a68ffbfa2d433ad0e7261edff8f https://www.encodeproject.org/files/ENCFF366RSZ/@@download/ENCFF366RSZ.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF690UZF bigWig fold change over control ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF449ZGE, ENCFF860NWP 173675644 ENCODE Processing Pipeline d82e15a17369c1dafd0e42fdf659e4e7 https://www.encodeproject.org/files/ENCFF690UZF/@@download/ENCFF690UZF.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF400PXF bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF267TLE, ENCFF372NSY, ENCFF671VNQ 6869843 ENCODE Processing Pipeline 175c77f97a758fbd14eb8c9869cb15ff https://www.encodeproject.org/files/ENCFF400PXF/@@download/ENCFF400PXF.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF500ZIR bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF392PMX, ENCFF449ZGE, ENCFF860NWP 6849065 ENCODE Processing Pipeline 0899d1d416fab6d80ea91eb2007a6ba4 https://www.encodeproject.org/files/ENCFF500ZIR/@@download/ENCFF500ZIR.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF731FHM bigWig signal p-value ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372NSY, ENCFF671VNQ 314982172 ENCODE Processing Pipeline 80cf9b0f14d8b47882eedec74c96e915 https://www.encodeproject.org/files/ENCFF731FHM/@@download/ENCFF731FHM.bigWig hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF108LPM bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF449ZGE, ENCFF860NWP 6006665 ENCODE Processing Pipeline ad10982e4d0ca93f23aae34d46d4a4f3 https://www.encodeproject.org/files/ENCFF108LPM/@@download/ENCFF108LPM.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF084UDY bigBed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF270QSP 12100546 ENCODE Processing Pipeline 8f8cae6da6c08befe87a5298cb7479e5 https://www.encodeproject.org/files/ENCFF084UDY/@@download/ENCFF084UDY.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF318AAV bigBed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF500ZIR 11825858 ENCODE Processing Pipeline 2ea6f3337065332ee4bcfd356c24d9d7 https://www.encodeproject.org/files/ENCFF318AAV/@@download/ENCFF318AAV.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF484MOG bigWig fold change over control ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF392PMX, ENCFF449ZGE, ENCFF860NWP 378496046 ENCODE Processing Pipeline 9ff119beb4cacb1b81e86426a2872c4c https://www.encodeproject.org/files/ENCFF484MOG/@@download/ENCFF484MOG.bigWig GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF814QXW bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF847PLW 1001315 ENCODE Processing Pipeline a1dea2a52968e603b64cba84120e5371 https://www.encodeproject.org/files/ENCFF814QXW/@@download/ENCFF814QXW.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF271KDK bed narrowPeak optimal idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF400PXF, ENCFF430MIT, ENCFF543QDS 477817 ENCODE Processing Pipeline f08e699a0cdd86fc32a5ced82408f769 https://www.encodeproject.org/files/ENCFF271KDK/@@download/ENCFF271KDK.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF032ZJL bigBed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF400PXF 11855717 ENCODE Processing Pipeline ceeae6259793cf2415d7b40acc568495 https://www.encodeproject.org/files/ENCFF032ZJL/@@download/ENCFF032ZJL.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF702ZPH bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF271KDK 1056194 ENCODE Processing Pipeline 89fe24ca4e48ccc7059a5a92ecd674d4 https://www.encodeproject.org/files/ENCFF702ZPH/@@download/ENCFF702ZPH.bigBed hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF543ITW bed narrowPeak conservative idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108LPM, ENCFF270QSP, ENCFF419RSJ, ENCFF500ZIR 447376 ENCODE Processing Pipeline 8e0656165a214aac04943ab28e4336b4 https://www.encodeproject.org/files/ENCFF543ITW/@@download/ENCFF543ITW.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF038FGJ bigBed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108LPM 11509860 ENCODE Processing Pipeline b7717ca2435570caf2ffdf4a005f5c9f https://www.encodeproject.org/files/ENCFF038FGJ/@@download/ENCFF038FGJ.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF129ZZX bed narrowPeak optimal idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF108LPM, ENCFF270QSP, ENCFF419RSJ, ENCFF500ZIR 479674 ENCODE Processing Pipeline cdd96fb754fb0c04e0c9ed49dd4be8d9 https://www.encodeproject.org/files/ENCFF129ZZX/@@download/ENCFF129ZZX.bed.gz GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF986OBN bigBed narrowPeak conservative idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF543ITW 1002948 ENCODE Processing Pipeline 8c766b547c3f5425159a6a8dc31256a3 https://www.encodeproject.org/files/ENCFF986OBN/@@download/ENCFF986OBN.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF292SJG bigBed narrowPeak optimal idr thresholded peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF129ZZX 1056140 ENCODE Processing Pipeline df4db16fa473a4f5e1b19534c4f6e5a0 https://www.encodeproject.org/files/ENCFF292SJG/@@download/ENCFF292SJG.bigBed GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF000YGY bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YHK 569619287 Michael Snyder, Stanford 303593e36233e4e5dfb7767b2d3d1b7e https://www.encodeproject.org/files/ENCFF000YGY/@@download/ENCFF000YGY.bam hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YGZ bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHJ 653401514 Michael Snyder, Stanford 59d4f06d76918d172045b04960d1eed6 https://www.encodeproject.org/files/ENCFF000YGZ/@@download/ENCFF000YGZ.bam hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YHA bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE ENCFF001VME 85387 Michael Snyder, Stanford caf4784e3d4616e6f06167813c9e8dbb https://www.encodeproject.org/files/ENCFF000YHA/@@download/ENCFF000YHA.bigBed hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YHC bigWig signal ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 417218123 Michael Snyder, Stanford 958e6298c263fd7bdbc40a51d437230b https://www.encodeproject.org/files/ENCFF000YHC/@@download/ENCFF000YHC.bigWig hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF000YHJ fastq reads ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 1 28 single-ended 512145606 Michael Snyder, Stanford bb116828ee18c65159397e77d3433e0a https://www.encodeproject.org/files/ENCFF000YHJ/@@download/ENCFF000YHJ.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQC/ released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YHK fastq reads ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 1 28 single-ended 445134984 Michael Snyder, Stanford 00dc0db379eb90a20f44b9494b440acf https://www.encodeproject.org/files/ENCFF000YHK/@@download/ENCFF000YHK.fastq.gz Illumina Genome Analyzer /files/ENCFF000YQB/ released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001VME bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 15872 Michael Snyder, Stanford 8b8df75e28cdea9eb62cef888fd2437f https://www.encodeproject.org/files/ENCFF001VME/@@download/ENCFF001VME.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF002CVT bed narrowPeak optimal idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 62006 ENCODE Consortium Analysis Working Group f0053fecf831b5f3782432eb66f512e0 https://www.encodeproject.org/files/ENCFF002CVT/@@download/ENCFF002CVT.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read depth, insufficient read length ENCFF985WLZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE ENCFF002CVT 240045 ENCODE Consortium 92d615ef475f994612aac895859e4a69 https://www.encodeproject.org/files/ENCFF985WLZ/@@download/ENCFF985WLZ.bigBed hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF035WPI bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YHJ, ENCFF643CGH 405891671 ENCODE Processing Pipeline 7ba794f524c200845d41381016b2fc4d https://www.encodeproject.org/files/ENCFF035WPI/@@download/ENCFF035WPI.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF769SAO bam unfiltered alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YHJ, ENCFF643CGH 656662950 ENCODE Processing Pipeline 2ca2e23c38ca2b6965600d27188529d3 https://www.encodeproject.org/files/ENCFF769SAO/@@download/ENCFF769SAO.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF756ADE bam unfiltered alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YHK, ENCFF643CGH 572160413 ENCODE Processing Pipeline eae23c431a7e12d42fccb75b393cc710 https://www.encodeproject.org/files/ENCFF756ADE/@@download/ENCFF756ADE.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF670DXN bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YHK, ENCFF643CGH 346660669 ENCODE Processing Pipeline d261b3a7fbd6c18cab7339bdcaf6b32d https://www.encodeproject.org/files/ENCFF670DXN/@@download/ENCFF670DXN.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF083ACA bam unfiltered alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YHJ, ENCFF807MUK 654829195 ENCODE Processing Pipeline b39c0676ad9dfeaaf5109ec095044e82 https://www.encodeproject.org/files/ENCFF083ACA/@@download/ENCFF083ACA.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF841SDW bam unfiltered alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YHK, ENCFF807MUK 570730724 ENCODE Processing Pipeline b65a28e03a2149480f9a88ef9046e274 https://www.encodeproject.org/files/ENCFF841SDW/@@download/ENCFF841SDW.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF364YIH bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YHK, ENCFF807MUK 347023632 ENCODE Processing Pipeline 1f2db662b6347f553ebc5d68fcc52e3d https://www.encodeproject.org/files/ENCFF364YIH/@@download/ENCFF364YIH.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF766XHO bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YHJ, ENCFF807MUK 406280920 ENCODE Processing Pipeline 55bde9cd5facac089622bc2e0696b400 https://www.encodeproject.org/files/ENCFF766XHO/@@download/ENCFF766XHO.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF628QDI bigWig signal p-value ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF670DXN, ENCFF715JBE 222478368 ENCODE Processing Pipeline 34ebc3918b3280ea72ceb3373611e18d https://www.encodeproject.org/files/ENCFF628QDI/@@download/ENCFF628QDI.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF791GYY bigWig signal p-value ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF364YIH, ENCFF732TLR 210703756 ENCODE Processing Pipeline 6b96e0ea4a1e794c6f16a87c6db1780d https://www.encodeproject.org/files/ENCFF791GYY/@@download/ENCFF791GYY.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF445GRR bigWig fold change over control ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF670DXN, ENCFF715JBE 169161732 ENCODE Processing Pipeline 781445569f0468ccbb2b208d34565a7c https://www.encodeproject.org/files/ENCFF445GRR/@@download/ENCFF445GRR.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF485KTP bigWig fold change over control ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF364YIH, ENCFF732TLR 171272572 ENCODE Processing Pipeline 4c4c26aecad3123131acb3b73e7ffc91 https://www.encodeproject.org/files/ENCFF485KTP/@@download/ENCFF485KTP.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF218EYJ bigWig signal p-value ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF035WPI, ENCFF156NSV 233082862 ENCODE Processing Pipeline 8952cc22a84baeabb78e6b7a8a8382dc https://www.encodeproject.org/files/ENCFF218EYJ/@@download/ENCFF218EYJ.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF577SXY bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF364YIH, ENCFF498SAC, ENCFF732TLR, ENCFF766XHO 6436100 ENCODE Processing Pipeline e902f9498a1bc2c5672b83fbadf98830 https://www.encodeproject.org/files/ENCFF577SXY/@@download/ENCFF577SXY.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF436JXH bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF035WPI, ENCFF156NSV 5195067 ENCODE Processing Pipeline 3558ab8d50e9be2f8784b9194103e7bb https://www.encodeproject.org/files/ENCFF436JXH/@@download/ENCFF436JXH.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF835DMD bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF155OWJ 12620653 ENCODE Processing Pipeline afd9706634f08cc201bb535286f500d3 https://www.encodeproject.org/files/ENCFF835DMD/@@download/ENCFF835DMD.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF718EVD bigWig signal p-value ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF766XHO 245357528 ENCODE Processing Pipeline 4f3b3e40055e2b696720d3fc8fb2347c https://www.encodeproject.org/files/ENCFF718EVD/@@download/ENCFF718EVD.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF705HNW bigWig signal p-value ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF035WPI, ENCFF156NSV, ENCFF670DXN, ENCFF715JBE 477468929 ENCODE Processing Pipeline 35cd7db0f17341ea623c34f4de1156db https://www.encodeproject.org/files/ENCFF705HNW/@@download/ENCFF705HNW.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF042SLP bigWig fold change over control ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF035WPI, ENCFF156NSV 209870115 ENCODE Processing Pipeline a957d7b7b689c7dad0ca9f171200560f https://www.encodeproject.org/files/ENCFF042SLP/@@download/ENCFF042SLP.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF375TQI bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF670DXN, ENCFF715JBE 5206203 ENCODE Processing Pipeline afde909afd322afaa6c9da6be240a51f https://www.encodeproject.org/files/ENCFF375TQI/@@download/ENCFF375TQI.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF487BAT bigWig fold change over control ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF364YIH, ENCFF498SAC, ENCFF732TLR, ENCFF766XHO 419554995 ENCODE Processing Pipeline 3810f0302b1da5eb9ed5bbb8fae7a9cf https://www.encodeproject.org/files/ENCFF487BAT/@@download/ENCFF487BAT.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF327OZA bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF766XHO 5195945 ENCODE Processing Pipeline 02e069ab850d2bc8130c4d989a9a0699 https://www.encodeproject.org/files/ENCFF327OZA/@@download/ENCFF327OZA.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF002UUR bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF436JXH 12874177 ENCODE Processing Pipeline 37210de80d3a56c68f5ff2d84ec5f23d https://www.encodeproject.org/files/ENCFF002UUR/@@download/ENCFF002UUR.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF038QYZ bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF035WPI, ENCFF156NSV, ENCFF670DXN, ENCFF715JBE 6426235 ENCODE Processing Pipeline 4ad856d5917b5cf0248b6ad86278c93a https://www.encodeproject.org/files/ENCFF038QYZ/@@download/ENCFF038QYZ.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF251WLL bed narrowPeak conservative idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF155OWJ, ENCFF327OZA, ENCFF577SXY 47905 ENCODE Processing Pipeline fbd42e5ce6493ddc7132a420db809c1c https://www.encodeproject.org/files/ENCFF251WLL/@@download/ENCFF251WLL.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF722TXP bigWig signal p-value ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF364YIH, ENCFF498SAC, ENCFF732TLR, ENCFF766XHO 426496524 ENCODE Processing Pipeline 2f7e760b7e71883be6d4f2c075cddd24 https://www.encodeproject.org/files/ENCFF722TXP/@@download/ENCFF722TXP.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF322QXV bigWig fold change over control ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF766XHO 210636292 ENCODE Processing Pipeline 5a4b5bac306d6f9c5c6f2959d9049094 https://www.encodeproject.org/files/ENCFF322QXV/@@download/ENCFF322QXV.bigWig hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF110DDG bigWig fold change over control ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF035WPI, ENCFF156NSV, ENCFF670DXN, ENCFF715JBE 417375668 ENCODE Processing Pipeline 01880d2396a59ca39b246f1733da52ea https://www.encodeproject.org/files/ENCFF110DDG/@@download/ENCFF110DDG.bigWig GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF155OWJ bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF364YIH, ENCFF732TLR 5210342 ENCODE Processing Pipeline dc2afec691eb3571ae809e637ff3341e https://www.encodeproject.org/files/ENCFF155OWJ/@@download/ENCFF155OWJ.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF044PRO bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF251WLL 167050 ENCODE Processing Pipeline 5ecb198c016e00300ff721f33105973d https://www.encodeproject.org/files/ENCFF044PRO/@@download/ENCFF044PRO.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF534QPN bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF327OZA 12869449 ENCODE Processing Pipeline 9457662d58d2c175f60877766a1f37b2 https://www.encodeproject.org/files/ENCFF534QPN/@@download/ENCFF534QPN.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF371IDM bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF375TQI 12623854 ENCODE Processing Pipeline c14e728f54b6973dee44f1629a7425c8 https://www.encodeproject.org/files/ENCFF371IDM/@@download/ENCFF371IDM.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF319RFJ bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF577SXY 13056817 ENCODE Processing Pipeline 999e4c598c4460278539de26059d7303 https://www.encodeproject.org/files/ENCFF319RFJ/@@download/ENCFF319RFJ.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF710LRU bed narrowPeak optimal idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF001TDO, ENCFF155OWJ, ENCFF327OZA, ENCFF577SXY 75396 ENCODE Processing Pipeline 3d8c82d5a90365fb3f865c67613b24ec https://www.encodeproject.org/files/ENCFF710LRU/@@download/ENCFF710LRU.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF957BFN bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710LRU 218665 ENCODE Processing Pipeline 4042811f803ffccd603ef4dd83f8fa0c https://www.encodeproject.org/files/ENCFF957BFN/@@download/ENCFF957BFN.bigBed hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF346NCW bigBed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF038QYZ 13062808 ENCODE Processing Pipeline 276685feef96df5f072f4a74c1407898 https://www.encodeproject.org/files/ENCFF346NCW/@@download/ENCFF346NCW.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF714WNT bed narrowPeak conservative idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF038QYZ, ENCFF375TQI, ENCFF419RSJ, ENCFF436JXH 47541 ENCODE Processing Pipeline cdd3b027a8ab48dfd235b30f22d80b5f https://www.encodeproject.org/files/ENCFF714WNT/@@download/ENCFF714WNT.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF253EAE bigBed narrowPeak conservative idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF714WNT 166698 ENCODE Processing Pipeline 47038887d9d515eb9bc29752a81b7c7d https://www.encodeproject.org/files/ENCFF253EAE/@@download/ENCFF253EAE.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF703NAE bed narrowPeak optimal idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF038QYZ, ENCFF375TQI, ENCFF419RSJ, ENCFF436JXH 71250 ENCODE Processing Pipeline 4cdefb528e2b466dc2060dfac36e2596 https://www.encodeproject.org/files/ENCFF703NAE/@@download/ENCFF703NAE.bed.gz GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF609IDD bigBed narrowPeak optimal idr thresholded peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF703NAE 211090 ENCODE Processing Pipeline 6b642ab5f012132e3611a312e0ac69c6 https://www.encodeproject.org/files/ENCFF609IDD/@@download/ENCFF609IDD.bigBed GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000RID bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000RIL 484243697 Richard Myers, HAIB aa8fe807afe218feb7455ea56ba00184 https://www.encodeproject.org/files/ENCFF000RID/@@download/ENCFF000RID.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RIE bigBed broadPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001URJ 955098 Richard Myers, HAIB 28d1a695d73595f49008b7ef2a9d5ea1 https://www.encodeproject.org/files/ENCFF000RIE/@@download/ENCFF000RIE.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RIF bigBed broadPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001URK 1437304 Richard Myers, HAIB 68ac4453fce6a6820ff20f2da713eb46 https://www.encodeproject.org/files/ENCFF000RIF/@@download/ENCFF000RIF.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RIG bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000RIR 856465177 Richard Myers, HAIB 2a02366c67fb824a8af1b7b8ec625593 https://www.encodeproject.org/files/ENCFF000RIG/@@download/ENCFF000RIG.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RII bigWig raw signal ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 18617685 Richard Myers, HAIB 0e6e84844d22ca2ec73ba9b8966b2d79 https://www.encodeproject.org/files/ENCFF000RII/@@download/ENCFF000RII.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000RIJ bigWig raw signal ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 31602958 Richard Myers, HAIB 4169bd687f981a2e24b35351045605f5 https://www.encodeproject.org/files/ENCFF000RIJ/@@download/ENCFF000RIJ.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF000RIL fastq reads ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 382757887 Richard Myers, HAIB 73767adb539c94094b6befa057a522b9 https://www.encodeproject.org/files/ENCFF000RIL/@@download/ENCFF000RIL.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RIR fastq reads ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 768762743 Richard Myers, HAIB b347d2d1f855d2ed569c6bce05384b23 https://www.encodeproject.org/files/ENCFF000RIR/@@download/ENCFF000RIR.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000RJV/ released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001URJ bed broadPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 1 590367 Richard Myers, HAIB 6aef3c6a0f0260ee73495b98dde75329 https://www.encodeproject.org/files/ENCFF001URJ/@@download/ENCFF001URJ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001URK bed broadPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 1 975427 Richard Myers, HAIB 47933a0b106666508a61272d5e9cbe99 https://www.encodeproject.org/files/ENCFF001URK/@@download/ENCFF001URK.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CNX bed narrowPeak optimal idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 790455 ENCODE Consortium Analysis Working Group 354cc51173bb51f774fddb577c87c857 https://www.encodeproject.org/files/ENCFF002CNX/@@download/ENCFF002CNX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from ENCFF089ZPR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CNX 1621730 ENCODE Consortium a67cf51b1a966a5494e7eec961208e9c https://www.encodeproject.org/files/ENCFF089ZPR/@@download/ENCFF089ZPR.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF637HYH bam unfiltered alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIL, ENCFF643CGH 554029511 ENCODE Processing Pipeline 76eb6e3be99c9da17cf7c70ce3931408 https://www.encodeproject.org/files/ENCFF637HYH/@@download/ENCFF637HYH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF318GHN bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIL, ENCFF643CGH 369188505 ENCODE Processing Pipeline 76aad04dbb4dd5f2e902726ca80b20b1 https://www.encodeproject.org/files/ENCFF318GHN/@@download/ENCFF318GHN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF899RIL bam unfiltered alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIR, ENCFF643CGH 1020185406 ENCODE Processing Pipeline 2ac725c0778051ac2d81e42aa2c8f9b6 https://www.encodeproject.org/files/ENCFF899RIL/@@download/ENCFF899RIL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF012QZM bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIR, ENCFF643CGH 650655809 ENCODE Processing Pipeline 9ca1f2cdd2a59dc672ff002c5c61de85 https://www.encodeproject.org/files/ENCFF012QZM/@@download/ENCFF012QZM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF589STQ bam unfiltered alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIL, ENCFF807MUK 551483205 ENCODE Processing Pipeline e192071bc987fb82625224859ebea102 https://www.encodeproject.org/files/ENCFF589STQ/@@download/ENCFF589STQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF185XXN bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIL, ENCFF807MUK 369433108 ENCODE Processing Pipeline 4956bf2e0afda6ea5218e54d01079ea3 https://www.encodeproject.org/files/ENCFF185XXN/@@download/ENCFF185XXN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF125RVN bam unfiltered alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIR, ENCFF807MUK 1016164986 ENCODE Processing Pipeline 57b691a0935882e180ea5f0d25daec38 https://www.encodeproject.org/files/ENCFF125RVN/@@download/ENCFF125RVN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF220EVN bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIR, ENCFF807MUK 651008145 ENCODE Processing Pipeline 485b6be366b9c1f4dbaea0931fe159d6 https://www.encodeproject.org/files/ENCFF220EVN/@@download/ENCFF220EVN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF776CSH bigWig signal p-value ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF318GHN, ENCFF503VFG 417308655 ENCODE Processing Pipeline 0e892b9065e93d95d4ce719eb5a7c102 https://www.encodeproject.org/files/ENCFF776CSH/@@download/ENCFF776CSH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF153URJ bigWig signal p-value ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012QZM, ENCFF318GHN, ENCFF503VFG 561948493 ENCODE Processing Pipeline 4d2da8a79c52cf04778c90c769954eb5 https://www.encodeproject.org/files/ENCFF153URJ/@@download/ENCFF153URJ.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF227BKF bigWig signal p-value ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF012QZM, ENCFF503VFG 538046602 ENCODE Processing Pipeline 8ad2dcefba996f4a61f7cdfef5a2fafb https://www.encodeproject.org/files/ENCFF227BKF/@@download/ENCFF227BKF.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF029WIH bigWig fold change over control ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF318GHN, ENCFF503VFG 263058467 ENCODE Processing Pipeline 255a985753420483ef07c719a43939a1 https://www.encodeproject.org/files/ENCFF029WIH/@@download/ENCFF029WIH.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF079MWL bigWig fold change over control ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012QZM, ENCFF318GHN, ENCFF503VFG 515242348 ENCODE Processing Pipeline c756223cebc0ba2a5873c58e5197a4d2 https://www.encodeproject.org/files/ENCFF079MWL/@@download/ENCFF079MWL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF179ZZV bigWig fold change over control ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF012QZM, ENCFF503VFG 339837608 ENCODE Processing Pipeline acda450c000f2ef439fc0d071c650b46 https://www.encodeproject.org/files/ENCFF179ZZV/@@download/ENCFF179ZZV.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF174AHG bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF012QZM, ENCFF318GHN, ENCFF503VFG 5693993 ENCODE Processing Pipeline d51c298f89759073e98f27b47067aac4 https://www.encodeproject.org/files/ENCFF174AHG/@@download/ENCFF174AHG.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF535HCL bigBed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF414HLY 10571219 ENCODE Processing Pipeline b1a0644ee29048a556a3a3db2fc9779a https://www.encodeproject.org/files/ENCFF535HCL/@@download/ENCFF535HCL.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF010TVF bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF012QZM, ENCFF503VFG 5084065 ENCODE Processing Pipeline ebb2c1a2a640870e03a5fee3bafde3b6 https://www.encodeproject.org/files/ENCFF010TVF/@@download/ENCFF010TVF.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF414HLY bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF318GHN, ENCFF503VFG 4620706 ENCODE Processing Pipeline e0be5a02034e2485ccaa22106aabc82f https://www.encodeproject.org/files/ENCFF414HLY/@@download/ENCFF414HLY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF515CHS bigBed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF174AHG 11283755 ENCODE Processing Pipeline 8cd8c6528ff73745140e4985423cebe4 https://www.encodeproject.org/files/ENCFF515CHS/@@download/ENCFF515CHS.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF770KLC bigBed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF010TVF 10924638 ENCODE Processing Pipeline 68ae2338f3cd5bb1990c22702185ae6c https://www.encodeproject.org/files/ENCFF770KLC/@@download/ENCFF770KLC.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF593ZQY bed narrowPeak conservative idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF010TVF, ENCFF174AHG, ENCFF414HLY, ENCFF419RSJ 620872 ENCODE Processing Pipeline 09821d54ac3d506fa7aff2958d02ec46 https://www.encodeproject.org/files/ENCFF593ZQY/@@download/ENCFF593ZQY.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF945NWB bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF420MLJ 1290312 ENCODE Processing Pipeline 8d87707020343e15ff17299618e39afe https://www.encodeproject.org/files/ENCFF945NWB/@@download/ENCFF945NWB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF420MLJ bed narrowPeak optimal idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF010TVF, ENCFF174AHG, ENCFF414HLY, ENCFF419RSJ 768654 ENCODE Processing Pipeline f95101c6a929df71c22b3220171b54dc https://www.encodeproject.org/files/ENCFF420MLJ/@@download/ENCFF420MLJ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF723WDT bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF593ZQY 1105474 ENCODE Processing Pipeline 684985548dc7b0cb31f8a41aa8cdd4e8 https://www.encodeproject.org/files/ENCFF723WDT/@@download/ENCFF723WDT.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF814HRD bigWig signal p-value ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185XXN, ENCFF960JYT 455820988 ENCODE Processing Pipeline 640242cddcd5675eac0e8f7ec33473d9 https://www.encodeproject.org/files/ENCFF814HRD/@@download/ENCFF814HRD.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF270LGS bigWig signal p-value ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF220EVN, ENCFF960JYT 487532827 ENCODE Processing Pipeline 441abdc2c6ec493de72caad8a21bc42f https://www.encodeproject.org/files/ENCFF270LGS/@@download/ENCFF270LGS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF493PAA bigWig fold change over control ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185XXN, ENCFF960JYT 271184596 ENCODE Processing Pipeline 59250439dbde3a008a56a65cc794c4ff https://www.encodeproject.org/files/ENCFF493PAA/@@download/ENCFF493PAA.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF845PAS bigWig signal p-value ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185XXN, ENCFF220EVN, ENCFF960JYT 562322951 ENCODE Processing Pipeline 76a6e506b7997202e025f8e32329a67d https://www.encodeproject.org/files/ENCFF845PAS/@@download/ENCFF845PAS.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF950SPU bigWig fold change over control ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF220EVN, ENCFF960JYT 340206233 ENCODE Processing Pipeline 15ab90f7cc831737ffa111698e6e8e24 https://www.encodeproject.org/files/ENCFF950SPU/@@download/ENCFF950SPU.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF205ZKG bigBed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF526YXC 10844339 ENCODE Processing Pipeline 9d99bdaaa54abefb1e4dcf3332c8fda9 https://www.encodeproject.org/files/ENCFF205ZKG/@@download/ENCFF205ZKG.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF275YIF bigWig fold change over control ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185XXN, ENCFF220EVN, ENCFF960JYT 514703198 ENCODE Processing Pipeline fce71e1a099bfe778aa627cec6c13918 https://www.encodeproject.org/files/ENCFF275YIF/@@download/ENCFF275YIF.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF660SCO bed narrowPeak conservative idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF038SPJ, ENCFF526YXC, ENCFF544QLN 648609 ENCODE Processing Pipeline 438197bf8cc0203154a4081c421abd4a https://www.encodeproject.org/files/ENCFF660SCO/@@download/ENCFF660SCO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF545UWR bigBed narrowPeak conservative idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF660SCO 1155618 ENCODE Processing Pipeline 17c4a593aaee415c227a2fb93e4c9d5c https://www.encodeproject.org/files/ENCFF545UWR/@@download/ENCFF545UWR.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF526YXC bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185XXN, ENCFF960JYT 4813020 ENCODE Processing Pipeline de933f76118b9bf70b5e7569dfc291c9 https://www.encodeproject.org/files/ENCFF526YXC/@@download/ENCFF526YXC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF544QLN bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF185XXN, ENCFF220EVN, ENCFF960JYT 5927294 ENCODE Processing Pipeline 586adfa472ed029e9f9a83e5a1ca0000 https://www.encodeproject.org/files/ENCFF544QLN/@@download/ENCFF544QLN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF810ZWC bigBed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF038SPJ 11377616 ENCODE Processing Pipeline ad141ec14448dd8b7b51859b9929b7b1 https://www.encodeproject.org/files/ENCFF810ZWC/@@download/ENCFF810ZWC.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF038SPJ bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF220EVN, ENCFF960JYT 5468660 ENCODE Processing Pipeline f37bb50273e61791e7b38fac40db20ca https://www.encodeproject.org/files/ENCFF038SPJ/@@download/ENCFF038SPJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF316DPX bigBed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF544QLN 11553011 ENCODE Processing Pipeline 36e8d6f5bbd32655ea6c08a9e0ba49e2 https://www.encodeproject.org/files/ENCFF316DPX/@@download/ENCFF316DPX.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF132WOI bed narrowPeak optimal idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF038SPJ, ENCFF526YXC, ENCFF544QLN 811564 ENCODE Processing Pipeline ba6fe4d9eb5bab786a9c237bd412de9f https://www.encodeproject.org/files/ENCFF132WOI/@@download/ENCFF132WOI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF651UEJ bigBed narrowPeak optimal idr thresholded peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132WOI 1372308 ENCODE Processing Pipeline 640f158f9eab5304c6b99f516a069ce7 https://www.encodeproject.org/files/ENCFF651UEJ/@@download/ENCFF651UEJ.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PGL bigBed broadPeak peaks ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UFM 305294 Richard Myers, HAIB 06f4644aa1b53f047fa2790b9644b306 https://www.encodeproject.org/files/ENCFF000PGL/@@download/ENCFF000PGL.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PGM bigBed broadPeak peaks ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UFN 225301 Richard Myers, HAIB 30653b6e6005163bc8974c0a1d504a64 https://www.encodeproject.org/files/ENCFF000PGM/@@download/ENCFF000PGM.bigBed hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PGN bam alignments ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PGX 1484596270 Richard Myers, HAIB cdd7059a6c8503262e96b9453e41ccf1 https://www.encodeproject.org/files/ENCFF000PGN/@@download/ENCFF000PGN.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PGO bam alignments ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PGZ 1807374149 Richard Myers, HAIB 15c5e5e4507db8a0663b69eff94f58d3 https://www.encodeproject.org/files/ENCFF000PGO/@@download/ENCFF000PGO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PGP bigWig raw signal ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 179978517 Richard Myers, HAIB 9be62ce07723524a62a3c0b30acf349f https://www.encodeproject.org/files/ENCFF000PGP/@@download/ENCFF000PGP.bigWig hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF000PGR bigWig raw signal ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 237811351 Richard Myers, HAIB 6a3f05b66c4e353601afb8c1da54d0b0 https://www.encodeproject.org/files/ENCFF000PGR/@@download/ENCFF000PGR.bigWig hg19 released inconsistent platforms missing derived_from, biological replicates with identical biosample ENCFF000PGX fastq reads ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1645797099 Richard Myers, HAIB ae111082c72291758a7221ea7d6c35b9 https://www.encodeproject.org/files/ENCFF000PGX/@@download/ENCFF000PGX.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPF/ released inconsistent platforms biological replicates with identical biosample ENCFF000PGZ fastq reads ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1869806255 Richard Myers, HAIB fa5035e09aafefa1aa4cd41e11833763 https://www.encodeproject.org/files/ENCFF000PGZ/@@download/ENCFF000PGZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PPI/ released inconsistent platforms biological replicates with identical biosample ENCFF001UFM bed broadPeak peaks ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 1 169761 Richard Myers, HAIB 8945c8f1a36d6b5f853cb3d4164af796 https://www.encodeproject.org/files/ENCFF001UFM/@@download/ENCFF001UFM.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UFN bed broadPeak peaks ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 1 89436 Richard Myers, HAIB a9c31940a405fdabef7e29e5cf5cf301 https://www.encodeproject.org/files/ENCFF001UFN/@@download/ENCFF001UFN.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF211PIU fastq reads ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 1 ENCFF439FBD 1516001356 Richard Myers, HAIB dce4ad6b06cd63cd61c1caff0dfb09ed https://www.encodeproject.org/files/ENCFF211PIU/@@download/ENCFF211PIU.fastq.gz Illumina HiSeq 2000 /files/ENCFF031GRR/ released antibody characterized with exemption experiment not submitted to GEO ENCFF439FBD fastq reads ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 1 76 paired-ended 2 ENCFF211PIU 1547525745 Richard Myers, HAIB 6a3cab38f515f8957620ffc4bf7d5960 https://www.encodeproject.org/files/ENCFF439FBD/@@download/ENCFF439FBD.fastq.gz Illumina HiSeq 2000 /files/ENCFF132BCH/ released antibody characterized with exemption experiment not submitted to GEO ENCFF638LRF bam unfiltered alignments ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF211PIU, ENCFF439FBD, ENCFF643CGH 3527075468 ENCODE Processing Pipeline a357278c29aa246ad428f05c05b0be44 https://www.encodeproject.org/files/ENCFF638LRF/@@download/ENCFF638LRF.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF810UHD bam unfiltered alignments ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF211PIU, ENCFF439FBD, ENCFF807MUK 3517604864 ENCODE Processing Pipeline 57ca17fd19c26a3a9f514dfa326ebbe9 https://www.encodeproject.org/files/ENCFF810UHD/@@download/ENCFF810UHD.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF480AYM bam alignments ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF211PIU, ENCFF439FBD, ENCFF643CGH 2729072129 ENCODE Processing Pipeline 508aa8d6adbae6064453a0629a53f02e https://www.encodeproject.org/files/ENCFF480AYM/@@download/ENCFF480AYM.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF391IJU bam alignments ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF211PIU, ENCFF439FBD, ENCFF807MUK 2727751213 ENCODE Processing Pipeline df804198917457fdcb50ab29f2ad6da9 https://www.encodeproject.org/files/ENCFF391IJU/@@download/ENCFF391IJU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF899HRH bigWig signal p-value ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF389ZAK, ENCFF480AYM 972436166 ENCODE Processing Pipeline 991206a1c57fbaf6a5cb997d1520483c https://www.encodeproject.org/files/ENCFF899HRH/@@download/ENCFF899HRH.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF908BNY bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF498QYW 1221735 ENCODE Processing Pipeline a5894f0a98623e86d69d9ccd28d65a07 https://www.encodeproject.org/files/ENCFF908BNY/@@download/ENCFF908BNY.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF498QYW bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF405VWN, ENCFF419RSJ 636543 ENCODE Processing Pipeline 30879bdff7d184cb12f984b1c187489a https://www.encodeproject.org/files/ENCFF498QYW/@@download/ENCFF498QYW.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF405VWN bed narrowPeak peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF389ZAK, ENCFF480AYM 6744639 ENCODE Processing Pipeline c4eddea1f6d9cd134ef6c50989f06c30 https://www.encodeproject.org/files/ENCFF405VWN/@@download/ENCFF405VWN.bed.gz GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF164DOR bigBed narrowPeak peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF405VWN 13351015 ENCODE Processing Pipeline 16e49009b78d2bd5c433d73b8651f5b1 https://www.encodeproject.org/files/ENCFF164DOR/@@download/ENCFF164DOR.bigBed GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF168MBT bigWig fold change over control ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF389ZAK, ENCFF480AYM 897042937 ENCODE Processing Pipeline daf1ba881be9ba5aa01608ebbafc2975 https://www.encodeproject.org/files/ENCFF168MBT/@@download/ENCFF168MBT.bigWig GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF848JVN bigWig fold change over control ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF391IJU, ENCFF578NQW 905165839 ENCODE Processing Pipeline e3837a40ed39766ae4cfc22ebb18f722 https://www.encodeproject.org/files/ENCFF848JVN/@@download/ENCFF848JVN.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF246QWX bigWig signal p-value ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF391IJU, ENCFF578NQW 977938329 ENCODE Processing Pipeline f3f1f06d186a534e8af733e8bd7cd1af https://www.encodeproject.org/files/ENCFF246QWX/@@download/ENCFF246QWX.bigWig hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF301YSN bigBed narrowPeak peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF507DHS 13395938 ENCODE Processing Pipeline 9c0430fdcefa653066e3f6159cedcbfb https://www.encodeproject.org/files/ENCFF301YSN/@@download/ENCFF301YSN.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF754JIP bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF001TDO, ENCFF507DHS 658842 ENCODE Processing Pipeline 6f6f8b8155259d2f5064cbab7b4c8ad6 https://www.encodeproject.org/files/ENCFF754JIP/@@download/ENCFF754JIP.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF192DEL bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF754JIP 1247025 ENCODE Processing Pipeline 875c7cfb5262391fe7ad10a79d8df8b4 https://www.encodeproject.org/files/ENCFF192DEL/@@download/ENCFF192DEL.bigBed hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF507DHS bed narrowPeak peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF391IJU, ENCFF578NQW 6794648 ENCODE Processing Pipeline 38db9bbbc16293889d2c09faad4f18f2 https://www.encodeproject.org/files/ENCFF507DHS/@@download/ENCFF507DHS.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000RUZ bam alignments ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RVE 418922200 Vishwanath Iyer, UTA 630474c9b8d2e6020f4e77eb71966b50 https://www.encodeproject.org/files/ENCFF000RUZ/@@download/ENCFF000RUZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RVA bigWig base overlap signal ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 147562429 Vishwanath Iyer, UTA 3f9125377300a4366db589d1b6105ee1 https://www.encodeproject.org/files/ENCFF000RVA/@@download/ENCFF000RVA.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RVB bigBed narrowPeak peaks ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF001UTB 1763716 Vishwanath Iyer, UTA fe6e6916b8faf7bf5a6055228f16fd05 https://www.encodeproject.org/files/ENCFF000RVB/@@download/ENCFF000RVB.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000RVC bam alignments ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RVI 463619565 Vishwanath Iyer, UTA ab0804b9fda67f8ad14f6fff793659b6 https://www.encodeproject.org/files/ENCFF000RVC/@@download/ENCFF000RVC.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RVD bigWig signal ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3790524962 Vishwanath Iyer, UTA 70630558c58e252c96f1ed6a4c7b420d https://www.encodeproject.org/files/ENCFF000RVD/@@download/ENCFF000RVD.bigWig hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RVE fastq reads ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 1 35 single-ended 374772838 Vishwanath Iyer, UTA 27774230b1d8e487d14960b579c92a06 https://www.encodeproject.org/files/ENCFF000RVE/@@download/ENCFF000RVE.fastq.gz Illumina Genome Analyzer /files/ENCFF000RVO/ released biological replicates with identical biosample insufficient read length ENCFF000RVG tar validation ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 12718781 Vishwanath Iyer, UTA 22523937cc38103ddf57625577db7002 https://www.encodeproject.org/files/ENCFF000RVG/@@download/ENCFF000RVG.tar.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF000RVI fastq reads ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 1 35 single-ended 416884872 Vishwanath Iyer, UTA 74b5a7630b8685d94f76343594d3b641 https://www.encodeproject.org/files/ENCFF000RVI/@@download/ENCFF000RVI.fastq.gz Illumina Genome Analyzer /files/ENCFF000RVO/ released biological replicates with identical biosample insufficient read length ENCFF001UTB bed narrowPeak peaks ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1096339 Vishwanath Iyer, UTA 822b039ee9aa4e2e5c8813657c2a970f https://www.encodeproject.org/files/ENCFF001UTB/@@download/ENCFF001UTB.bed.gz hg19 released missing derived_from, biological replicates with identical biosample insufficient read length ENCFF002DBA bed narrowPeak optimal idr thresholded peaks ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 891419 ENCODE Consortium Analysis Working Group d488647dab782e3362984b6656a72d0b https://www.encodeproject.org/files/ENCFF002DBA/@@download/ENCFF002DBA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF316WEG bigBed narrowPeak optimal idr thresholded peaks ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE ENCFF002DBA 1637462 ENCODE Consortium 426c87fac26f8e4adb323254a82959b5 https://www.encodeproject.org/files/ENCFF316WEG/@@download/ENCFF316WEG.bigBed hg19 released biological replicates with identical biosample insufficient read length ENCFF000XUM bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF001VKN 2266698 Michael Snyder, Stanford cfcb50163b4a1e0218f1900faffced80 https://www.encodeproject.org/files/ENCFF000XUM/@@download/ENCFF000XUM.bigBed hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000XUN fastq reads ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 36 single-ended 1004104344 Michael Snyder, Stanford e371689df1e8d48fd879b4ca6a0cf547 https://www.encodeproject.org/files/ENCFF000XUN/@@download/ENCFF000XUN.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000XUP fastq reads ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 36 single-ended 1042105984 Michael Snyder, Stanford e9925727efa43a4a9edafd90b42894b4 https://www.encodeproject.org/files/ENCFF000XUP/@@download/ENCFF000XUP.fastq.gz Illumina Genome Analyzer /files/ENCFF000XTF/ released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000XUR bigWig signal ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 372692898 Michael Snyder, Stanford a5423c783360ed31a82a043c7e8f774d https://www.encodeproject.org/files/ENCFF000XUR/@@download/ENCFF000XUR.bigWig hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000XUS bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 1 516790858 Michael Snyder, Stanford abaa8e440ca29cfa082a6df9dbab2488 https://www.encodeproject.org/files/ENCFF000XUS/@@download/ENCFF000XUS.bam hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF000XUT bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 1 503795891 Michael Snyder, Stanford 1253530cf07497df90ea330e265ee647 https://www.encodeproject.org/files/ENCFF000XUT/@@download/ENCFF000XUT.bam hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF001VKN bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1028293 Michael Snyder, Stanford d1d56afcd597d7fc7fc1c8893588d2f7 https://www.encodeproject.org/files/ENCFF001VKN/@@download/ENCFF001VKN.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF002CUK bed narrowPeak optimal idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 312639 ENCODE Consortium Analysis Working Group 439832b6bb55ca22b47907260f823928 https://www.encodeproject.org/files/ENCFF002CUK/@@download/ENCFF002CUK.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample ENCFF179DVX bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE ENCFF002CUK 824023 ENCODE Consortium 3485e14e85a474dc745342b6a9ad9fb9 https://www.encodeproject.org/files/ENCFF179DVX/@@download/ENCFF179DVX.bigBed hg19 archived borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF932DKG bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUP, ENCFF643CGH 586242205 ENCODE Processing Pipeline 1fbc42bef0f81e9428b8e0ddb3d5d1fa https://www.encodeproject.org/files/ENCFF932DKG/@@download/ENCFF932DKG.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF760BPG bam unfiltered alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUP, ENCFF643CGH 1122422420 ENCODE Processing Pipeline cad9e506366fc09892a5202ae81546f2 https://www.encodeproject.org/files/ENCFF760BPG/@@download/ENCFF760BPG.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF477SBU bam unfiltered alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUN, ENCFF643CGH 1163396099 ENCODE Processing Pipeline 0315fea1fb972b99af772c0757f9c18d https://www.encodeproject.org/files/ENCFF477SBU/@@download/ENCFF477SBU.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF147JLU bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUN, ENCFF643CGH 836228522 ENCODE Processing Pipeline b59fdf089f403f6a2eb9b7aa3e8b4448 https://www.encodeproject.org/files/ENCFF147JLU/@@download/ENCFF147JLU.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF954NZI bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUP, ENCFF807MUK 586622309 ENCODE Processing Pipeline 35da8365dcbdafd49011a705ef554c15 https://www.encodeproject.org/files/ENCFF954NZI/@@download/ENCFF954NZI.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF031HXF bam unfiltered alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUP, ENCFF807MUK 1116640690 ENCODE Processing Pipeline 225ea5c95fdc740c7672d8798c34adf4 https://www.encodeproject.org/files/ENCFF031HXF/@@download/ENCFF031HXF.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF092GOB bam unfiltered alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUN, ENCFF807MUK 1158433341 ENCODE Processing Pipeline 328347a075337c454c8e0bbc416a411f https://www.encodeproject.org/files/ENCFF092GOB/@@download/ENCFF092GOB.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF693CAN bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUN, ENCFF807MUK 836734285 ENCODE Processing Pipeline a003eaa95a736d2754284031e87d1978 https://www.encodeproject.org/files/ENCFF693CAN/@@download/ENCFF693CAN.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF573PGC bigWig signal p-value ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF954NZI 484017976 ENCODE Processing Pipeline c92e069d53c43943ecf909b2fc49a7ee https://www.encodeproject.org/files/ENCFF573PGC/@@download/ENCFF573PGC.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF669PHP bigWig signal p-value ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF693CAN 640224683 ENCODE Processing Pipeline 1d69f6bd84a9da7b0f3d8f27c5a03aa4 https://www.encodeproject.org/files/ENCFF669PHP/@@download/ENCFF669PHP.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF708RZG bigWig signal p-value ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF693CAN, ENCFF954NZI 709646066 ENCODE Processing Pipeline c7f48fe514f512b89dbf9df485bdb008 https://www.encodeproject.org/files/ENCFF708RZG/@@download/ENCFF708RZG.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF509RVQ bigWig fold change over control ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF693CAN, ENCFF954NZI 691984032 ENCODE Processing Pipeline 07ded8e9b7cf44d4e07d5cd37f260120 https://www.encodeproject.org/files/ENCFF509RVQ/@@download/ENCFF509RVQ.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF781MRU bigWig fold change over control ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF954NZI 355286803 ENCODE Processing Pipeline ce287456a3eb43f1e508b539b9ac6add https://www.encodeproject.org/files/ENCFF781MRU/@@download/ENCFF781MRU.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF116XIH bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF668ITU 13621171 ENCODE Processing Pipeline 041b449c32c08877b0ac12670d4d040f https://www.encodeproject.org/files/ENCFF116XIH/@@download/ENCFF116XIH.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF762QHA bed narrowPeak conservative idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF479LKN, ENCFF668ITU, ENCFF969CUT 248076 ENCODE Processing Pipeline 8820a542e92961407d6f98bcc5bf43fc https://www.encodeproject.org/files/ENCFF762QHA/@@download/ENCFF762QHA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF668ITU bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF107SKX, ENCFF693CAN, ENCFF954NZI 5975922 ENCODE Processing Pipeline 242c769c0364e1af6a270dca63719b57 https://www.encodeproject.org/files/ENCFF668ITU/@@download/ENCFF668ITU.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF196MUJ bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF969CUT 13308599 ENCODE Processing Pipeline d0da20211f162bbdbeb975fa7e54b76f https://www.encodeproject.org/files/ENCFF196MUJ/@@download/ENCFF196MUJ.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF776XXN bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF479LKN 10790461 ENCODE Processing Pipeline ccb34cd81116398f0099253673a3fd42 https://www.encodeproject.org/files/ENCFF776XXN/@@download/ENCFF776XXN.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF421SEJ bed narrowPeak optimal idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF001TDO, ENCFF479LKN, ENCFF668ITU, ENCFF969CUT 285287 ENCODE Processing Pipeline 5b4317e08a15d3d41a087c68fcdcf641 https://www.encodeproject.org/files/ENCFF421SEJ/@@download/ENCFF421SEJ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF991HEZ bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF421SEJ 618199 ENCODE Processing Pipeline 1eee43005e863b38cfd9646550346188 https://www.encodeproject.org/files/ENCFF991HEZ/@@download/ENCFF991HEZ.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF756ABA bigWig fold change over control ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF693CAN 459744033 ENCODE Processing Pipeline fd186ada3dc51b213aad6fa1308636c6 https://www.encodeproject.org/files/ENCFF756ABA/@@download/ENCFF756ABA.bigWig hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF479LKN bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF954NZI 4433393 ENCODE Processing Pipeline 94fa5d6611ef829f5f3c388c14d144de https://www.encodeproject.org/files/ENCFF479LKN/@@download/ENCFF479LKN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF727TFX bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF762QHA 555869 ENCODE Processing Pipeline 494c555000b042edd8fd36e8efcde185 https://www.encodeproject.org/files/ENCFF727TFX/@@download/ENCFF727TFX.bigBed hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF969CUT bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF693CAN 5328984 ENCODE Processing Pipeline c37c04dcf9abd8d974cc46f824cba538 https://www.encodeproject.org/files/ENCFF969CUT/@@download/ENCFF969CUT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF521ZAO bigWig signal p-value ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF147JLU, ENCFF165KZY 532989996 ENCODE Processing Pipeline 3b357a015db3243ca7e1666352f0bfaa https://www.encodeproject.org/files/ENCFF521ZAO/@@download/ENCFF521ZAO.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF829JUX bigWig signal p-value ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF147JLU, ENCFF165KZY, ENCFF932DKG 715352307 ENCODE Processing Pipeline b56586e44e9694083baafc3faf4be3ab https://www.encodeproject.org/files/ENCFF829JUX/@@download/ENCFF829JUX.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF396DPR bigWig fold change over control ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF932DKG 356819740 ENCODE Processing Pipeline 4e554542bc417b668ac6d699784982de https://www.encodeproject.org/files/ENCFF396DPR/@@download/ENCFF396DPR.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF417FCH bigWig signal p-value ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF932DKG 514472332 ENCODE Processing Pipeline 18b5308e6e3a9fb1c1d031d4a256dba5 https://www.encodeproject.org/files/ENCFF417FCH/@@download/ENCFF417FCH.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF296XYJ bigWig fold change over control ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF147JLU, ENCFF165KZY 451903427 ENCODE Processing Pipeline da6f6ee55802bfbc3e3b79f59afa87b8 https://www.encodeproject.org/files/ENCFF296XYJ/@@download/ENCFF296XYJ.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF495UJE bigWig fold change over control ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF147JLU, ENCFF165KZY, ENCFF932DKG 699236922 ENCODE Processing Pipeline 5545ee6570042dc1ce7939a2ba97408b https://www.encodeproject.org/files/ENCFF495UJE/@@download/ENCFF495UJE.bigWig GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF552RBE bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF165KZY, ENCFF932DKG 4433722 ENCODE Processing Pipeline 0c8957c36aaa84f1b30d0dcdc72b7a0e https://www.encodeproject.org/files/ENCFF552RBE/@@download/ENCFF552RBE.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF038GKY bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF147JLU, ENCFF165KZY 5336463 ENCODE Processing Pipeline 123679e29da45e04779f658bed664b15 https://www.encodeproject.org/files/ENCFF038GKY/@@download/ENCFF038GKY.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF919FAB bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF147JLU, ENCFF165KZY, ENCFF932DKG 5976146 ENCODE Processing Pipeline 47519e48e4b6b63a0d8abd669fc96b21 https://www.encodeproject.org/files/ENCFF919FAB/@@download/ENCFF919FAB.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF125JGQ bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF552RBE 10791433 ENCODE Processing Pipeline 765c2df32c901684b7414c47228de2b4 https://www.encodeproject.org/files/ENCFF125JGQ/@@download/ENCFF125JGQ.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF553BQT bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF038GKY 13307453 ENCODE Processing Pipeline 4b70c59c1507efb95fc25949024ca08a https://www.encodeproject.org/files/ENCFF553BQT/@@download/ENCFF553BQT.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF199NOM bigBed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF919FAB 13629733 ENCODE Processing Pipeline 3439bd8d4597966930732806f6fa1011 https://www.encodeproject.org/files/ENCFF199NOM/@@download/ENCFF199NOM.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF394TCH bigBed narrowPeak optimal idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF144TBQ 617837 ENCODE Processing Pipeline 11f5427591d3b2e06e8829440d231b32 https://www.encodeproject.org/files/ENCFF394TCH/@@download/ENCFF394TCH.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF766MOS bed narrowPeak conservative idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038GKY, ENCFF419RSJ, ENCFF552RBE, ENCFF919FAB 250841 ENCODE Processing Pipeline 14967226f3173a45c097bb4e38ae7fc4 https://www.encodeproject.org/files/ENCFF766MOS/@@download/ENCFF766MOS.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF241CRP bigBed narrowPeak conservative idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF766MOS 560685 ENCODE Processing Pipeline d5f5da8ffb0b14a2f8dd614500147682 https://www.encodeproject.org/files/ENCFF241CRP/@@download/ENCFF241CRP.bigBed GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF144TBQ bed narrowPeak optimal idr thresholded peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF038GKY, ENCFF419RSJ, ENCFF552RBE, ENCFF919FAB 286036 ENCODE Processing Pipeline 842fb344042cc0ae4262d3132579e5bb https://www.encodeproject.org/files/ENCFF144TBQ/@@download/ENCFF144TBQ.bed.gz GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000VSQ bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 1 409582154 Michael Snyder, Stanford 6e28dd49f7beb2a7ce39392c4f0374cc https://www.encodeproject.org/files/ENCFF000VSQ/@@download/ENCFF000VSQ.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VSR bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE ENCFF001VDY 1606699 Michael Snyder, Stanford ecae6efa8ecea54400e3d46097019a0d https://www.encodeproject.org/files/ENCFF000VSR/@@download/ENCFF000VSR.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VSS fastq reads ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 1 36 single-ended 866308069 Michael Snyder, Stanford 07ea70e99ca11fc3ff416bb6bf8c7b7f https://www.encodeproject.org/files/ENCFF000VSS/@@download/ENCFF000VSS.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWD/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VSU bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 1 676995464 Michael Snyder, Stanford 4a4867a44c7c81e3af16373f784c9aec https://www.encodeproject.org/files/ENCFF000VSU/@@download/ENCFF000VSU.bam hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient replicate concordance ENCFF000VSV fastq reads ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 1 36 single-ended 1386720214 Michael Snyder, Stanford 3184a1b21a60a10e7947505e70440c88 https://www.encodeproject.org/files/ENCFF000VSV/@@download/ENCFF000VSV.fastq.gz Illumina Genome Analyzer /files/ENCFF000VWK/ released low read length, low read depth, inconsistent control read length, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000VSX bigWig signal ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 410295605 Michael Snyder, Stanford 463fc33bea2dcbdd2c0ca6826fc9e33d https://www.encodeproject.org/files/ENCFF000VSX/@@download/ENCFF000VSX.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF001VDY bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 722249 Michael Snyder, Stanford 52ed65dd7ad9cf290819dc2431d7966a https://www.encodeproject.org/files/ENCFF001VDY/@@download/ENCFF001VDY.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient replicate concordance ENCFF111WAU bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF643CGH 855339862 ENCODE Processing Pipeline f9fe74b2723da8ab9e76505065bb0728 https://www.encodeproject.org/files/ENCFF111WAU/@@download/ENCFF111WAU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF876YXO bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF643CGH 1386257340 ENCODE Processing Pipeline 3a8748bbef1c033ea80ad1d1399ae3c2 https://www.encodeproject.org/files/ENCFF876YXO/@@download/ENCFF876YXO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF313RZR bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF643CGH 482599241 ENCODE Processing Pipeline 6ae8d761eddcc3c2ecb2c46fd5144e06 https://www.encodeproject.org/files/ENCFF313RZR/@@download/ENCFF313RZR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF649NFF bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF643CGH 881292251 ENCODE Processing Pipeline 862d6485bce72cd2070b5b2781e2ca39 https://www.encodeproject.org/files/ENCFF649NFF/@@download/ENCFF649NFF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF576YWR bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF807MUK 852214403 ENCODE Processing Pipeline 89b04db8366fa8b8636fd89a0ae034b8 https://www.encodeproject.org/files/ENCFF576YWR/@@download/ENCFF576YWR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF812ZZO bam unfiltered alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF807MUK 1381322424 ENCODE Processing Pipeline 97197e5bac5e25fe3c0c50fb986b7b29 https://www.encodeproject.org/files/ENCFF812ZZO/@@download/ENCFF812ZZO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF546JQP bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF807MUK 482593304 ENCODE Processing Pipeline ee34479e0944cb8ab2fc0b89241a9162 https://www.encodeproject.org/files/ENCFF546JQP/@@download/ENCFF546JQP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF355ZOB bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF807MUK 878564748 ENCODE Processing Pipeline 678eea37c37f8f8621846d17f53bf5e2 https://www.encodeproject.org/files/ENCFF355ZOB/@@download/ENCFF355ZOB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF307KCB bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 227267232 ENCODE Processing Pipeline 4305561b82fd57a8f7cb6058996d77ca https://www.encodeproject.org/files/ENCFF307KCB/@@download/ENCFF307KCB.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF086OCM bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF355ZOB, ENCFF545DZO, ENCFF546JQP 513166956 ENCODE Processing Pipeline 8597500b997f6bad447ac3fe35e0b044 https://www.encodeproject.org/files/ENCFF086OCM/@@download/ENCFF086OCM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF253OOR bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 186581 ENCODE Processing Pipeline c051a2082c2cebef6f097c085ba97220 https://www.encodeproject.org/files/ENCFF253OOR/@@download/ENCFF253OOR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF881ZSX bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 4229342 ENCODE Processing Pipeline 0b3344f3b272c6e547f3a91c5c0b799b https://www.encodeproject.org/files/ENCFF881ZSX/@@download/ENCFF881ZSX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF402ZPO bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF253OOR 476826 ENCODE Processing Pipeline beec9d452b49cefa0b42e157e38a04e3 https://www.encodeproject.org/files/ENCFF402ZPO/@@download/ENCFF402ZPO.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF803SFG bed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF253OOR, ENCFF452BDW, ENCFF881ZSX 20674 ENCODE Processing Pipeline 08e28c36fbf0a60d7b2b3cba2b737d0b https://www.encodeproject.org/files/ENCFF803SFG/@@download/ENCFF803SFG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF301EEM bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 197534098 ENCODE Processing Pipeline 55484e74bed2a17e40f23cb81b290bbc https://www.encodeproject.org/files/ENCFF301EEM/@@download/ENCFF301EEM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF968FGD bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF803SFG 88326 ENCODE Processing Pipeline 8fe4d1f1015d2a2bc9a3beb69e4f4848 https://www.encodeproject.org/files/ENCFF968FGD/@@download/ENCFF968FGD.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF646FQY bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF721SDD 359667 ENCODE Processing Pipeline 2720712ffcfd4032650e1ce501fff126 https://www.encodeproject.org/files/ENCFF646FQY/@@download/ENCFF646FQY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF467PXY bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF881ZSX 10638919 ENCODE Processing Pipeline 3a048c7021ae931d324354330900f5f9 https://www.encodeproject.org/files/ENCFF467PXY/@@download/ENCFF467PXY.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF672DPB bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF452BDW 11000731 ENCODE Processing Pipeline 50682be9cc5114a35e61071bdf606619 https://www.encodeproject.org/files/ENCFF672DPB/@@download/ENCFF672DPB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF071RMK bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 72257164 ENCODE Processing Pipeline 1dd75c8d604cb0fb7fccebfa8d5bad90 https://www.encodeproject.org/files/ENCFF071RMK/@@download/ENCFF071RMK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF750DSI bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF355ZOB, ENCFF545DZO, ENCFF546JQP 154671354 ENCODE Processing Pipeline ee8a91545a4023ab93df51a5b94f7214 https://www.encodeproject.org/files/ENCFF750DSI/@@download/ENCFF750DSI.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF024UVN bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 307122676 ENCODE Processing Pipeline 62fd83af8ddb43fcf3391803eebdb8ec https://www.encodeproject.org/files/ENCFF024UVN/@@download/ENCFF024UVN.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF452BDW bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF110OHA, ENCFF355ZOB, ENCFF545DZO, ENCFF546JQP 4842452 ENCODE Processing Pipeline 3617f901d764d7d3548c5d4f598890f5 https://www.encodeproject.org/files/ENCFF452BDW/@@download/ENCFF452BDW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF721SDD bed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF001TDO, ENCFF253OOR, ENCFF452BDW, ENCFF881ZSX 144927 ENCODE Processing Pipeline 2baa963f5a20127cf4c51d1458e74e6f https://www.encodeproject.org/files/ENCFF721SDD/@@download/ENCFF721SDD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF212JPM bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF903AOD 11001775 ENCODE Processing Pipeline 1105386b2ca87390baf24c99845cd06a https://www.encodeproject.org/files/ENCFF212JPM/@@download/ENCFF212JPM.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF645HEW bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF814RAA 477368 ENCODE Processing Pipeline da0bbe55cfaf955dffbf8d84e4a562c0 https://www.encodeproject.org/files/ENCFF645HEW/@@download/ENCFF645HEW.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF571IVQ bigBed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF567NFS 361695 ENCODE Processing Pipeline 66750727d886832e22840fa0e933fd98 https://www.encodeproject.org/files/ENCFF571IVQ/@@download/ENCFF571IVQ.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF479XOG bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF313RZR, ENCFF477ZKJ, ENCFF649NFF, ENCFF710SMS 156264285 ENCODE Processing Pipeline 3bd51ce5422385c3ec40eb271f9b8c49 https://www.encodeproject.org/files/ENCFF479XOG/@@download/ENCFF479XOG.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF943GYL bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF477ZKJ, ENCFF649NFF 4230302 ENCODE Processing Pipeline 54c9fde670a75bd7b84587cc27a279de https://www.encodeproject.org/files/ENCFF943GYL/@@download/ENCFF943GYL.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF711GDP bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313RZR, ENCFF477ZKJ, ENCFF710SMS 196819396 ENCODE Processing Pipeline 10b424026eeb39025616f203473236f1 https://www.encodeproject.org/files/ENCFF711GDP/@@download/ENCFF711GDP.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF497GSR bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313RZR, ENCFF477ZKJ, ENCFF710SMS 221624854 ENCODE Processing Pipeline 1559cbe4e8487d24403e74d36d3ded27 https://www.encodeproject.org/files/ENCFF497GSR/@@download/ENCFF497GSR.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF257ZPK bigBed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF943GYL 10640789 ENCODE Processing Pipeline 57c4ee17c91570e929b3c6b79c2c6da1 https://www.encodeproject.org/files/ENCFF257ZPK/@@download/ENCFF257ZPK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF645LHM bed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF814RAA, ENCFF903AOD, ENCFF943GYL 20302 ENCODE Processing Pipeline dcfc7ff9146e1e3f5d2915f2b45c24b5 https://www.encodeproject.org/files/ENCFF645LHM/@@download/ENCFF645LHM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF814RAA bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF313RZR, ENCFF477ZKJ, ENCFF710SMS 186591 ENCODE Processing Pipeline b6e045513505ff204ead3d8866e3269d https://www.encodeproject.org/files/ENCFF814RAA/@@download/ENCFF814RAA.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF903AOD bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF313RZR, ENCFF477ZKJ, ENCFF649NFF, ENCFF710SMS 4841359 ENCODE Processing Pipeline 15ada7fb0fc73a27a22af3d08a918ab7 https://www.encodeproject.org/files/ENCFF903AOD/@@download/ENCFF903AOD.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF603TOF bigWig signal p-value ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF477ZKJ, ENCFF649NFF 71962001 ENCODE Processing Pipeline 7bbaefd6c0606d3a5ca02f58392df8d3 https://www.encodeproject.org/files/ENCFF603TOF/@@download/ENCFF603TOF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF761FWM bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF477ZKJ, ENCFF649NFF 307241271 ENCODE Processing Pipeline cd3afdd36b1c953a75a769b2ea202244 https://www.encodeproject.org/files/ENCFF761FWM/@@download/ENCFF761FWM.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF195RAW bigWig fold change over control ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF313RZR, ENCFF477ZKJ, ENCFF649NFF, ENCFF710SMS 521321899 ENCODE Processing Pipeline 923c2ac35ff4998869a18c955721764e https://www.encodeproject.org/files/ENCFF195RAW/@@download/ENCFF195RAW.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF567NFS bed narrowPeak optimal idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF419RSJ, ENCFF814RAA, ENCFF903AOD, ENCFF943GYL 146497 ENCODE Processing Pipeline 605a6671380a5a7fcce464be7f420515 https://www.encodeproject.org/files/ENCFF567NFS/@@download/ENCFF567NFS.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF243ZRP bigBed narrowPeak conservative idr thresholded peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF645LHM 87948 ENCODE Processing Pipeline 32dee7dea401544f493c24afa2f4e232 https://www.encodeproject.org/files/ENCFF243ZRP/@@download/ENCFF243ZRP.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000OYO bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYZ 978940315 Richard Myers, HAIB 0e2cca9d03df0cad85ba15ac6495616e https://www.encodeproject.org/files/ENCFF000OYO/@@download/ENCFF000OYO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYP bigBed broadPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 ENCFF001UDQ 487328 Richard Myers, HAIB 57e17e6452a013838076241a64ed746a https://www.encodeproject.org/files/ENCFF000OYP/@@download/ENCFF000OYP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYQ bigBed broadPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 ENCFF001UDR 773182 Richard Myers, HAIB 4e7ee43e628da829b4267fe9b6a058ff https://www.encodeproject.org/files/ENCFF000OYQ/@@download/ENCFF000OYQ.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYR bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZC 986211764 Richard Myers, HAIB ca2f4c028ca29186cbe6259a9e0312cf https://www.encodeproject.org/files/ENCFF000OYR/@@download/ENCFF000OYR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYT bigWig raw signal ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 72632438 Richard Myers, HAIB 9e10e2024f5c046b2bea74f9ce09beed https://www.encodeproject.org/files/ENCFF000OYT/@@download/ENCFF000OYT.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYV bigWig raw signal ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 110294012 Richard Myers, HAIB a677a8c796b7278c62ad28157c7a7a7b https://www.encodeproject.org/files/ENCFF000OYV/@@download/ENCFF000OYV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYZ fastq reads ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 50 single-ended 1120179005 Richard Myers, HAIB 3db77804a51ad2442fa7b2ccb16f05b0 https://www.encodeproject.org/files/ENCFF000OYZ/@@download/ENCFF000OYZ.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBW/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OZC fastq reads ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 50 single-ended 1075148021 Richard Myers, HAIB 0990e3957017a82d717f8ca184b5a983 https://www.encodeproject.org/files/ENCFF000OZC/@@download/ENCFF000OZC.fastq.gz Illumina HiSeq 2000 /files/ENCFF000PBY/ released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UDQ bed broadPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 1 253129 Richard Myers, HAIB f367e0e8e82a283001ebbf2457ff4781 https://www.encodeproject.org/files/ENCFF001UDQ/@@download/ENCFF001UDQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UDR bed broadPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 1 506953 Richard Myers, HAIB e3803729abcd5a5e5085a81671070ba8 https://www.encodeproject.org/files/ENCFF001UDR/@@download/ENCFF001UDR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample insufficient read depth missing control alignments ENCFF723HYI bam unfiltered alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OYZ, ENCFF643CGH 1002567127 ENCODE Processing Pipeline 266d084a9df386005449075c81f06bf6 https://www.encodeproject.org/files/ENCFF723HYI/@@download/ENCFF723HYI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF044YYR bam unfiltered alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OYZ, ENCFF807MUK 1001806224 ENCODE Processing Pipeline 2db628b55c13670f4bfb3ec4d0788d05 https://www.encodeproject.org/files/ENCFF044YYR/@@download/ENCFF044YYR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF652BRJ bam unfiltered alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OZC, ENCFF807MUK 1042640347 ENCODE Processing Pipeline 05700424ba38c2f911d12877371d123d https://www.encodeproject.org/files/ENCFF652BRJ/@@download/ENCFF652BRJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF296CPJ bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OYZ, ENCFF807MUK 370710277 ENCODE Processing Pipeline 979a1213bbf9684170adfe6b1f1e99d8 https://www.encodeproject.org/files/ENCFF296CPJ/@@download/ENCFF296CPJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF351MMD bam unfiltered alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OZC, ENCFF643CGH 1044381561 ENCODE Processing Pipeline 4306c9e324f6949ed557fcf935efeeda https://www.encodeproject.org/files/ENCFF351MMD/@@download/ENCFF351MMD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF309AXU bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OYZ, ENCFF643CGH 370718804 ENCODE Processing Pipeline 58144ff3c7213e7b81041b541ba12be5 https://www.encodeproject.org/files/ENCFF309AXU/@@download/ENCFF309AXU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF555MNQ bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OZC, ENCFF807MUK 613893602 ENCODE Processing Pipeline 320c6e316485bbbf6bec3bb2b2ade034 https://www.encodeproject.org/files/ENCFF555MNQ/@@download/ENCFF555MNQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF014MZL bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OZC, ENCFF643CGH 613928215 ENCODE Processing Pipeline 486f637776c042a5b811e03c07d1fabf https://www.encodeproject.org/files/ENCFF014MZL/@@download/ENCFF014MZL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF853IQV bigWig signal p-value ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF296CPJ, ENCFF831FMU 300998292 ENCODE Processing Pipeline 1d907c7a2260f0c2b352bd44758da535 https://www.encodeproject.org/files/ENCFF853IQV/@@download/ENCFF853IQV.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF431ENU bigWig fold change over control ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF296CPJ, ENCFF831FMU 183442371 ENCODE Processing Pipeline 624acb57343e8548d6e5cba17bf08069 https://www.encodeproject.org/files/ENCFF431ENU/@@download/ENCFF431ENU.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF904SWH bigWig signal p-value ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF555MNQ, ENCFF622MSR 357366357 ENCODE Processing Pipeline 9ecda555155f2b13a7f41bfe1f545b9c https://www.encodeproject.org/files/ENCFF904SWH/@@download/ENCFF904SWH.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF534GNR bigWig signal p-value ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF296CPJ, ENCFF555MNQ, ENCFF622MSR, ENCFF831FMU 637975998 ENCODE Processing Pipeline ae1881ec1dece24d9e5d6a669e3f62a2 https://www.encodeproject.org/files/ENCFF534GNR/@@download/ENCFF534GNR.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF139HRW bigWig fold change over control ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF555MNQ, ENCFF622MSR 286010967 ENCODE Processing Pipeline 233b885dbdaa88fb39f28b200c1324fc https://www.encodeproject.org/files/ENCFF139HRW/@@download/ENCFF139HRW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF021YGW bigWig fold change over control ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF296CPJ, ENCFF555MNQ, ENCFF622MSR, ENCFF831FMU 528071706 ENCODE Processing Pipeline fa4044ad9f4ed1d129c7260d6cf83970 https://www.encodeproject.org/files/ENCFF021YGW/@@download/ENCFF021YGW.bigWig hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF946JHX bigWig signal p-value ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF309AXU 340115330 ENCODE Processing Pipeline 5d7cf027d3a64a66fb47353367e76aae https://www.encodeproject.org/files/ENCFF946JHX/@@download/ENCFF946JHX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF956JHX bigWig fold change over control ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF309AXU 183434151 ENCODE Processing Pipeline 81d4fdba1cd796d120edb8cacd81500b https://www.encodeproject.org/files/ENCFF956JHX/@@download/ENCFF956JHX.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF234IZR bigWig signal p-value ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF014MZL 440192262 ENCODE Processing Pipeline 7c9fa5dad334d69af361b762baac226a https://www.encodeproject.org/files/ENCFF234IZR/@@download/ENCFF234IZR.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF142PEQ bigWig fold change over control ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF014MZL, ENCFF309AXU 532144267 ENCODE Processing Pipeline c0ec7c220c309bd77295b3ccf5a60235 https://www.encodeproject.org/files/ENCFF142PEQ/@@download/ENCFF142PEQ.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF568ZRW bigWig signal p-value ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF014MZL, ENCFF309AXU 654875629 ENCODE Processing Pipeline c6730161682e31a77555f1a01c611fb6 https://www.encodeproject.org/files/ENCFF568ZRW/@@download/ENCFF568ZRW.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF621VHH bigWig fold change over control ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF014MZL 284889558 ENCODE Processing Pipeline 610165660e3365e23ac4989e3e1cbdd8 https://www.encodeproject.org/files/ENCFF621VHH/@@download/ENCFF621VHH.bigWig GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF214AAT bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF555MNQ, ENCFF622MSR 4828973 ENCODE Processing Pipeline 7493298ac1ae24dc05127a63c9198348 https://www.encodeproject.org/files/ENCFF214AAT/@@download/ENCFF214AAT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF154TPN bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF014MZL 4827891 ENCODE Processing Pipeline c67327a40bfb164f2d32fe135df0ced3 https://www.encodeproject.org/files/ENCFF154TPN/@@download/ENCFF154TPN.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF021NMZ bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF296CPJ, ENCFF831FMU 2565552 ENCODE Processing Pipeline 98f67bb8cf3d192bc3750f98903272a1 https://www.encodeproject.org/files/ENCFF021NMZ/@@download/ENCFF021NMZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF025FOL bigBed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF154TPN 10603349 ENCODE Processing Pipeline 139178082a61e4d4c98de72451061a76 https://www.encodeproject.org/files/ENCFF025FOL/@@download/ENCFF025FOL.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF467HOK bigBed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF971PWB 11187434 ENCODE Processing Pipeline bdb6a422a0cd54ec97f4ae5a6fac9e84 https://www.encodeproject.org/files/ENCFF467HOK/@@download/ENCFF467HOK.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF106KMI bigBed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF021NMZ 6032304 ENCODE Processing Pipeline bad4ada99c797f5bb527544e1c1d3f54 https://www.encodeproject.org/files/ENCFF106KMI/@@download/ENCFF106KMI.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF971PWB bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF296CPJ, ENCFF555MNQ, ENCFF622MSR, ENCFF831FMU 5247353 ENCODE Processing Pipeline eda6345b12dd5704348f9d8ffc5485fb https://www.encodeproject.org/files/ENCFF971PWB/@@download/ENCFF971PWB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF568STA bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF309AXU 2566184 ENCODE Processing Pipeline a513dea1e4e6c6c9d3e8b0b4f32f9a68 https://www.encodeproject.org/files/ENCFF568STA/@@download/ENCFF568STA.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF550EQQ bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF014MZL, ENCFF309AXU 5204446 ENCODE Processing Pipeline 9ed3741025efcd0c2d2156912177cf1c https://www.encodeproject.org/files/ENCFF550EQQ/@@download/ENCFF550EQQ.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF617JSF bigBed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF568STA 5979347 ENCODE Processing Pipeline 7b79176f8863296e9e70435a77eae8ec https://www.encodeproject.org/files/ENCFF617JSF/@@download/ENCFF617JSF.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF876DLC bigBed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF550EQQ 11174996 ENCODE Processing Pipeline 53eb7ad5a3757a0d341a937af459d507 https://www.encodeproject.org/files/ENCFF876DLC/@@download/ENCFF876DLC.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF056ESE bed narrowPeak conservative idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF154TPN, ENCFF419RSJ, ENCFF550EQQ, ENCFF568STA 510872 ENCODE Processing Pipeline c8afb24f1412c9792e2a5c8a7525c54a https://www.encodeproject.org/files/ENCFF056ESE/@@download/ENCFF056ESE.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF594ZJG bigBed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF214AAT 10596636 ENCODE Processing Pipeline fc710c154922cdb4051991e0ca9e27c3 https://www.encodeproject.org/files/ENCFF594ZJG/@@download/ENCFF594ZJG.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF728UAB bigBed narrowPeak conservative idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF056ESE 957116 ENCODE Processing Pipeline 0d404a94abdd2b149505ab16189494e3 https://www.encodeproject.org/files/ENCFF728UAB/@@download/ENCFF728UAB.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF025JZZ bed narrowPeak conservative idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF021NMZ, ENCFF214AAT, ENCFF971PWB 511023 ENCODE Processing Pipeline e8fac38b6ad6643f1a5b4c272eef0abf https://www.encodeproject.org/files/ENCFF025JZZ/@@download/ENCFF025JZZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF549PGC bed narrowPeak optimal idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF154TPN, ENCFF419RSJ, ENCFF550EQQ, ENCFF568STA 598467 ENCODE Processing Pipeline 713f58a6497a9168a326123919672ebe https://www.encodeproject.org/files/ENCFF549PGC/@@download/ENCFF549PGC.bed.gz GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF272GUU bigBed narrowPeak conservative idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF025JZZ 954980 ENCODE Processing Pipeline 80d6ef792d23c3306156968eba962761 https://www.encodeproject.org/files/ENCFF272GUU/@@download/ENCFF272GUU.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF927TJR bigBed narrowPeak optimal idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF549PGC 1074755 ENCODE Processing Pipeline 50e8f08fa98f6b3df85d63ab6ebb0fb5 https://www.encodeproject.org/files/ENCFF927TJR/@@download/ENCFF927TJR.bigBed GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF917ZPO bed narrowPeak optimal idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF001TDO, ENCFF021NMZ, ENCFF214AAT, ENCFF971PWB 602672 ENCODE Processing Pipeline eb204541dbdac5aa54d530917f198a18 https://www.encodeproject.org/files/ENCFF917ZPO/@@download/ENCFF917ZPO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF239EKP bigBed narrowPeak optimal idr thresholded peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF917ZPO 1078942 ENCODE Processing Pipeline 728705974bd32ce7aeda7b545712c46e https://www.encodeproject.org/files/ENCFF239EKP/@@download/ENCFF239EKP.bigBed hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000NCH bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NCS 648634950 Richard Myers, HAIB bdeb51cf894e34b87611dd4ca2874984 https://www.encodeproject.org/files/ENCFF000NCH/@@download/ENCFF000NCH.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NCI bigBed broadPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001TST 356911 Richard Myers, HAIB 3a5ac12a8f9ed7832bd0bf84f34451bc https://www.encodeproject.org/files/ENCFF000NCI/@@download/ENCFF000NCI.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NCJ bigBed broadPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001TSU 460664 Richard Myers, HAIB 75a89af354467e19663771a3ea349d4a https://www.encodeproject.org/files/ENCFF000NCJ/@@download/ENCFF000NCJ.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NCK bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NCU 829025116 Richard Myers, HAIB fb95c651cfbd8d42e0a667338d686e65 https://www.encodeproject.org/files/ENCFF000NCK/@@download/ENCFF000NCK.bam hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NCM bigWig raw signal ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 32322502 Richard Myers, HAIB 49578abd40b744421ca3d11b52eb1d5e https://www.encodeproject.org/files/ENCFF000NCM/@@download/ENCFF000NCM.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NCN bigWig raw signal ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36463803 Richard Myers, HAIB 789e8c35a7faeea0e027c25626d75767 https://www.encodeproject.org/files/ENCFF000NCN/@@download/ENCFF000NCN.bigWig hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF000NCS fastq reads ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1979544237 Richard Myers, HAIB 2071476ca403a05b3799d34cf6b800a6 https://www.encodeproject.org/files/ENCFF000NCS/@@download/ENCFF000NCS.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NDA/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF000NCU fastq reads ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 2250617300 Richard Myers, HAIB 80c8b227d78a25a9af22858bb7878017 https://www.encodeproject.org/files/ENCFF000NCU/@@download/ENCFF000NCU.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000NDD/ released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001TST bed broadPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 1 173563 Richard Myers, HAIB 1a57e99f0f400e614bbe8e12af0355ae https://www.encodeproject.org/files/ENCFF001TST/@@download/ENCFF001TST.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF001TSU bed broadPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 1 223712 Richard Myers, HAIB 01382d717def855dd6f1cef166ee99fc https://www.encodeproject.org/files/ENCFF001TSU/@@download/ENCFF001TSU.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF002CFT bed narrowPeak optimal idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 383261 ENCODE Consortium Analysis Working Group ed04dad9591a53ab86cf4c71d4b97597 https://www.encodeproject.org/files/ENCFF002CFT/@@download/ENCFF002CFT.bed.gz hg19 archived low read length, low read depth, inconsistent target of control experiment missing derived_from, biological replicates with identical biosample insufficient read depth ENCFF398EGO bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CFT 943871 ENCODE Consortium cd02a3e9e9e080e19cb803a390f9bc3c https://www.encodeproject.org/files/ENCFF398EGO/@@download/ENCFF398EGO.bigBed hg19 archived low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF195MCG bam unfiltered alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCU, ENCFF643CGH 2571322407 ENCODE Processing Pipeline 7dedd663ec1c6bc6689084a9d09c7dc2 https://www.encodeproject.org/files/ENCFF195MCG/@@download/ENCFF195MCG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF942WEL bam unfiltered alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCS, ENCFF807MUK 2228956611 ENCODE Processing Pipeline 45d70f414aa51015227dcc2c0e4becdd https://www.encodeproject.org/files/ENCFF942WEL/@@download/ENCFF942WEL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF602PRS bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCS, ENCFF643CGH 364410770 ENCODE Processing Pipeline c83412a254e863c0c16dec967b6ca802 https://www.encodeproject.org/files/ENCFF602PRS/@@download/ENCFF602PRS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF530CNR bam unfiltered alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCS, ENCFF643CGH 2232115892 ENCODE Processing Pipeline ac8a2561a58ba38b28b059c2e43b8d00 https://www.encodeproject.org/files/ENCFF530CNR/@@download/ENCFF530CNR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF293LDW bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCU, ENCFF643CGH 528375158 ENCODE Processing Pipeline 4015d89c6ea4853e0d61a4915d6a7457 https://www.encodeproject.org/files/ENCFF293LDW/@@download/ENCFF293LDW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF604IHW bam unfiltered alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCU, ENCFF807MUK 2567596248 ENCODE Processing Pipeline 86e55a506337870a2d55c2b2f208d791 https://www.encodeproject.org/files/ENCFF604IHW/@@download/ENCFF604IHW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF642SKG bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCS, ENCFF807MUK 364681799 ENCODE Processing Pipeline fb80aa72981d6338a81e41b8ce2a8aca https://www.encodeproject.org/files/ENCFF642SKG/@@download/ENCFF642SKG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF966AYA bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCU, ENCFF807MUK 528559530 ENCODE Processing Pipeline af2f78b6faeed4661e1516fd966f5515 https://www.encodeproject.org/files/ENCFF966AYA/@@download/ENCFF966AYA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF782WHQ bigWig fold change over control ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF105WJU, ENCFF602PRS, ENCFF717HZW 215489997 ENCODE Processing Pipeline efcf566dc7bdb6d66e99e1d20355df78 https://www.encodeproject.org/files/ENCFF782WHQ/@@download/ENCFF782WHQ.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF448TUL bigWig signal p-value ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF579FIX, ENCFF901AZD, ENCFF966AYA 330290002 ENCODE Processing Pipeline 1d4f6aca2809a3260bcca0a03decd521 https://www.encodeproject.org/files/ENCFF448TUL/@@download/ENCFF448TUL.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF192RWG bigWig signal p-value ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD, ENCFF966AYA 505919977 ENCODE Processing Pipeline 372650f60cb79bbf719af4c7d5a4f520 https://www.encodeproject.org/files/ENCFF192RWG/@@download/ENCFF192RWG.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF186RCU bigWig fold change over control ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF579FIX, ENCFF901AZD, ENCFF966AYA 233623276 ENCODE Processing Pipeline 20efad8f9cb5a0e6ba384941b45cd443 https://www.encodeproject.org/files/ENCFF186RCU/@@download/ENCFF186RCU.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF822BGD bigWig signal p-value ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105WJU, ENCFF293LDW, ENCFF602PRS, ENCFF717HZW 517417355 ENCODE Processing Pipeline 8a20462ce067588bf48da35fc37d1b7f https://www.encodeproject.org/files/ENCFF822BGD/@@download/ENCFF822BGD.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF995NTI bigWig fold change over control ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105WJU, ENCFF293LDW, ENCFF602PRS, ENCFF717HZW 374249922 ENCODE Processing Pipeline dc1d946bc68d7775b7b24f3675ed40b8 https://www.encodeproject.org/files/ENCFF995NTI/@@download/ENCFF995NTI.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF543KDK bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF105WJU, ENCFF602PRS, ENCFF717HZW 3454505 ENCODE Processing Pipeline 0137381c90257508085b686bc32bcd00 https://www.encodeproject.org/files/ENCFF543KDK/@@download/ENCFF543KDK.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF980CVX bigBed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF033RSK 7722060 ENCODE Processing Pipeline dcf0262c17e2df76a16ee3f8b1dd6acb https://www.encodeproject.org/files/ENCFF980CVX/@@download/ENCFF980CVX.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF990ANB bigBed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF631NXF 9053240 ENCODE Processing Pipeline d4eb0995a223e577650ec880f47fc692 https://www.encodeproject.org/files/ENCFF990ANB/@@download/ENCFF990ANB.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF645POH bed narrowPeak conservative idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF033RSK, ENCFF631NXF, ENCFF664XHQ 185416 ENCODE Processing Pipeline a43be316bfc8f0962c200e0fc7bbd9d1 https://www.encodeproject.org/files/ENCFF645POH/@@download/ENCFF645POH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF711MZF bed narrowPeak optimal idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF533AHM, ENCFF543KDK, ENCFF846XTY 173541 ENCODE Processing Pipeline ee116f20f39cb4ab711450f1d56dfd07 https://www.encodeproject.org/files/ENCFF711MZF/@@download/ENCFF711MZF.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF818RPC bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF711MZF 372108 ENCODE Processing Pipeline 869a47cfefed480fe8297c7b658000b6 https://www.encodeproject.org/files/ENCFF818RPC/@@download/ENCFF818RPC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF462LIK bigWig signal p-value ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD 358844440 ENCODE Processing Pipeline fba0e06dc40fe9fd0ba72c701bbe6003 https://www.encodeproject.org/files/ENCFF462LIK/@@download/ENCFF462LIK.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF723FZF bigWig signal p-value ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF105WJU, ENCFF602PRS, ENCFF717HZW 364521242 ENCODE Processing Pipeline 06cf088b53249d72ee197a9e10390549 https://www.encodeproject.org/files/ENCFF723FZF/@@download/ENCFF723FZF.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF135PKM bigWig fold change over control ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD 209854906 ENCODE Processing Pipeline 82434cfd3d67f713d764a22f92687468 https://www.encodeproject.org/files/ENCFF135PKM/@@download/ENCFF135PKM.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF678TFX bigWig fold change over control ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD, ENCFF966AYA 367677003 ENCODE Processing Pipeline 2aed4eb6c4b3b60977bd03f76087d98f https://www.encodeproject.org/files/ENCFF678TFX/@@download/ENCFF678TFX.bigWig hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF033RSK bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD 3506599 ENCODE Processing Pipeline d1ed86c6b4b54e36d8892c9e10e5d188 https://www.encodeproject.org/files/ENCFF033RSK/@@download/ENCFF033RSK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF664XHQ bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD, ENCFF966AYA 5196358 ENCODE Processing Pipeline 3d963551d4925d63c1789ddca0975ddb https://www.encodeproject.org/files/ENCFF664XHQ/@@download/ENCFF664XHQ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF533AHM bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF105WJU, ENCFF293LDW, ENCFF717HZW 3893851 ENCODE Processing Pipeline 878e4297d3b8e8550a968b48ea03a9fb https://www.encodeproject.org/files/ENCFF533AHM/@@download/ENCFF533AHM.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF846XTY bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF105WJU, ENCFF293LDW, ENCFF602PRS, ENCFF717HZW 1380086 ENCODE Processing Pipeline 86a2fdd388016c66c19ca1b1fc8e582e https://www.encodeproject.org/files/ENCFF846XTY/@@download/ENCFF846XTY.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF748MAA bigBed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF543KDK 7695509 ENCODE Processing Pipeline f7700b752cfc2b0b87d08eb48a2e4bcf https://www.encodeproject.org/files/ENCFF748MAA/@@download/ENCFF748MAA.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF672MFU bigBed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF664XHQ 11013866 ENCODE Processing Pipeline 8c11ffd369591dd21f3b4677fbd2a907 https://www.encodeproject.org/files/ENCFF672MFU/@@download/ENCFF672MFU.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF135IKK bigBed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF533AHM 9058556 ENCODE Processing Pipeline 154fe1703f2f02d8546b80f06e725e81 https://www.encodeproject.org/files/ENCFF135IKK/@@download/ENCFF135IKK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF574LWK bigBed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF846XTY 2714249 ENCODE Processing Pipeline 5c3475cc24f80bf649a79b344ce40ad8 https://www.encodeproject.org/files/ENCFF574LWK/@@download/ENCFF574LWK.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF453WIK bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF645POH 387585 ENCODE Processing Pipeline 00f5b79a9421d618a72cb68dbcca62c5 https://www.encodeproject.org/files/ENCFF453WIK/@@download/ENCFF453WIK.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF567LEJ bed narrowPeak conservative idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF419RSJ, ENCFF533AHM, ENCFF543KDK, ENCFF846XTY 134593 ENCODE Processing Pipeline 3bf9ed9e04d2ab2a790da863f5fdc294 https://www.encodeproject.org/files/ENCFF567LEJ/@@download/ENCFF567LEJ.bed.gz GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF163VTC bigBed narrowPeak conservative idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF567LEJ 312557 ENCODE Processing Pipeline aceeabf7c74a25d6215ad4e4532434ab https://www.encodeproject.org/files/ENCFF163VTC/@@download/ENCFF163VTC.bigBed GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF209KAN bigBed narrowPeak optimal idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF080RMP 443900 ENCODE Processing Pipeline 8f336445f87367478dd10488cd81ce65 https://www.encodeproject.org/files/ENCFF209KAN/@@download/ENCFF209KAN.bigBed hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF074KCT bigWig signal p-value ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF105WJU, ENCFF293LDW, ENCFF717HZW 383617748 ENCODE Processing Pipeline 39fc6469bdd78a7c8c25fcd3f8847b42 https://www.encodeproject.org/files/ENCFF074KCT/@@download/ENCFF074KCT.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF017UHV bigWig fold change over control ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF105WJU, ENCFF293LDW, ENCFF717HZW 233621072 ENCODE Processing Pipeline e09682b438c3e2b753a76eea39a02da6 https://www.encodeproject.org/files/ENCFF017UHV/@@download/ENCFF017UHV.bigWig GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF631NXF bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF579FIX, ENCFF901AZD, ENCFF966AYA 3892753 ENCODE Processing Pipeline 3b78ed24857b2f33172aacc9e0c4ef5e https://www.encodeproject.org/files/ENCFF631NXF/@@download/ENCFF631NXF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF080RMP bed narrowPeak optimal idr thresholded peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF033RSK, ENCFF631NXF, ENCFF664XHQ 222072 ENCODE Processing Pipeline cf7d2954902a39818ff7b875dc307a9e https://www.encodeproject.org/files/ENCFF080RMP/@@download/ENCFF080RMP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF372AND fastq reads ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 1 36 single-ended 1625072723 Bradley Bernstein, Broad f31ebe2454e1319ecd054b0180c2a074 https://www.encodeproject.org/files/ENCFF372AND/@@download/ENCFF372AND.fastq.gz Illumina HiSeq 2000 /files/ENCFF036EGF/, /files/ENCFF191QXK/ released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF650WVN fastq reads ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 1 36 single-ended 869282968 Bradley Bernstein, Broad 4f9f611a96f81719a7b3b18a12436d8c https://www.encodeproject.org/files/ENCFF650WVN/@@download/ENCFF650WVN.fastq.gz Illumina HiSeq 2000 /files/ENCFF064XIS/, /files/ENCFF138KKQ/, /files/ENCFF145GCJ/, /files/ENCFF303YPV/, /files/ENCFF368CYL/, /files/ENCFF393KUX/, /files/ENCFF472QMD/, /files/ENCFF508ZFI/, /files/ENCFF635VQA/, /files/ENCFF659UFR/, /files/ENCFF763DAQ/ released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF936WIF bam unfiltered alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 36 ENCFF643CGH, ENCFF650WVN 1161789698 ENCODE Processing Pipeline e71f8d9719bed0bfe3ff71a499c2f978 https://www.encodeproject.org/files/ENCFF936WIF/@@download/ENCFF936WIF.bam GRCh38 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF410WJI bam unfiltered alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 36 ENCFF372AND, ENCFF643CGH 1951966983 ENCODE Processing Pipeline aa55cb2b62a2f1a6401c586670c9b242 https://www.encodeproject.org/files/ENCFF410WJI/@@download/ENCFF410WJI.bam GRCh38 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF629FYM bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 36 ENCFF650WVN, ENCFF807MUK 589401942 ENCODE Processing Pipeline 4056ccd41b47e0f520fe40cf2cfaebe2 https://www.encodeproject.org/files/ENCFF629FYM/@@download/ENCFF629FYM.bam hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF876GKY bam unfiltered alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 36 ENCFF372AND, ENCFF807MUK 1940108923 ENCODE Processing Pipeline 9d2bcfab231112157456f6e16462226e https://www.encodeproject.org/files/ENCFF876GKY/@@download/ENCFF876GKY.bam hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF690FZS bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 36 ENCFF643CGH, ENCFF650WVN 589612159 ENCODE Processing Pipeline 4e7ab46a6f72034602379b7f65fdea40 https://www.encodeproject.org/files/ENCFF690FZS/@@download/ENCFF690FZS.bam GRCh38 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF282OVK bam unfiltered alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 36 ENCFF650WVN, ENCFF807MUK 1146537107 ENCODE Processing Pipeline dc2eb88f3457c1142904c0c3043af6d7 https://www.encodeproject.org/files/ENCFF282OVK/@@download/ENCFF282OVK.bam hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF500PUQ bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 36 ENCFF372AND, ENCFF643CGH 621711041 ENCODE Processing Pipeline dd68509cfd877ae37a6067270bb3fb32 https://www.encodeproject.org/files/ENCFF500PUQ/@@download/ENCFF500PUQ.bam GRCh38 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF746UGW bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 36 ENCFF372AND, ENCFF807MUK 621778990 ENCODE Processing Pipeline c3ce5d6fc495c79b7e45c541ec88d5d5 https://www.encodeproject.org/files/ENCFF746UGW/@@download/ENCFF746UGW.bam hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF839PJD bigWig signal p-value ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF746UGW 1781818082 ENCODE Processing Pipeline 2acf7647c856ff8e3744a2344f26f98e https://www.encodeproject.org/files/ENCFF839PJD/@@download/ENCFF839PJD.bigWig hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF453JTM bigWig signal p-value ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW 1593858400 ENCODE Processing Pipeline bc2a46a8f4ac131d4ad66fee9379075c https://www.encodeproject.org/files/ENCFF453JTM/@@download/ENCFF453JTM.bigWig hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF541ABB bigWig signal p-value ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW, ENCFF746UGW 1953529126 ENCODE Processing Pipeline 1b5d6ca41bbf928b4d1ed0d62e62d176 https://www.encodeproject.org/files/ENCFF541ABB/@@download/ENCFF541ABB.bigWig hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF703NUP bigWig fold change over control ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW 876442678 ENCODE Processing Pipeline d6b03d59b07e1e4cb44765d6691efac3 https://www.encodeproject.org/files/ENCFF703NUP/@@download/ENCFF703NUP.bigWig hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF854RNL bigWig fold change over control ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF746UGW 950415730 ENCODE Processing Pipeline 22a1d0b4a523c617bcdec0ea48868ac1 https://www.encodeproject.org/files/ENCFF854RNL/@@download/ENCFF854RNL.bigWig hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF669GHA bigWig fold change over control ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW, ENCFF746UGW 1341313612 ENCODE Processing Pipeline 895ccedb4c9bb69bdef5508994f1c463 https://www.encodeproject.org/files/ENCFF669GHA/@@download/ENCFF669GHA.bigWig hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF592TWY bigBed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 ENCFF299IER 13133849 ENCODE Processing Pipeline ded80b78c1fd5ed1884b848d7770f69e https://www.encodeproject.org/files/ENCFF592TWY/@@download/ENCFF592TWY.bigBed hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF885CMC bigBed narrowPeak optimal idr thresholded peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF936JMD 94836 ENCODE Processing Pipeline c1305d53eb2ab79756289f0ad3cb915d https://www.encodeproject.org/files/ENCFF885CMC/@@download/ENCFF885CMC.bigBed hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF110RXK bed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW, ENCFF746UGW 6838072 ENCODE Processing Pipeline 76b76555292400ceb8c561c786ee9eb4 https://www.encodeproject.org/files/ENCFF110RXK/@@download/ENCFF110RXK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF604HRC bigBed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 ENCFF535NEK 13426928 ENCODE Processing Pipeline 59886a0c54b6f8108aeb23c98e0823b5 https://www.encodeproject.org/files/ENCFF604HRC/@@download/ENCFF604HRC.bigBed hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF260YJB bigBed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF110RXK 13351415 ENCODE Processing Pipeline 99a935c3929f61cee76d5ad0b59cc1d9 https://www.encodeproject.org/files/ENCFF260YJB/@@download/ENCFF260YJB.bigBed hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF936JMD bed narrowPeak optimal idr thresholded peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1, 2 ENCFF001TDO, ENCFF110RXK, ENCFF299IER, ENCFF535NEK 6175 ENCODE Processing Pipeline 61b1575a3c471b239c764df28bd2e3d1 https://www.encodeproject.org/files/ENCFF936JMD/@@download/ENCFF936JMD.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF535NEK bed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF746UGW 5898157 ENCODE Processing Pipeline a580a16f4aab89b519066b1754aba149 https://www.encodeproject.org/files/ENCFF535NEK/@@download/ENCFF535NEK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF299IER bed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW 6422356 ENCODE Processing Pipeline b9c58591c2ea2ed7a818e92128130f8c https://www.encodeproject.org/files/ENCFF299IER/@@download/ENCFF299IER.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF000PVN bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PWC 1240281330 Richard Myers, HAIB b0716bd81170efe1fd0a8e411fb669d8 https://www.encodeproject.org/files/ENCFF000PVN/@@download/ENCFF000PVN.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PVO bigBed broadPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 ENCFF001UIW 302804 Richard Myers, HAIB 86ed02350d76fe7b223e6928fbdb3912 https://www.encodeproject.org/files/ENCFF000PVO/@@download/ENCFF000PVO.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PVQ bigBed broadPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 ENCFF001UIY 448130 Richard Myers, HAIB f5fb7ff9e1ec4cab381400a170232012 https://www.encodeproject.org/files/ENCFF000PVQ/@@download/ENCFF000PVQ.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PVR bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PWA 973300680 Richard Myers, HAIB 56ab039797ad4b71211e211ebc837ae0 https://www.encodeproject.org/files/ENCFF000PVR/@@download/ENCFF000PVR.bam hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PVS bigWig raw signal ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 18255912 Richard Myers, HAIB fb3b9dc8e85636a3a1226d22f8c1dbec https://www.encodeproject.org/files/ENCFF000PVS/@@download/ENCFF000PVS.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000PVU bigWig raw signal ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 21800354 Richard Myers, HAIB 4ac1cd7306a68743492173e12c2c827e https://www.encodeproject.org/files/ENCFF000PVU/@@download/ENCFF000PVU.bigWig hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF000PWA fastq reads ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 36 single-ended 969133678 Richard Myers, HAIB 086560bad3ea9a7d18174a8eaa67fc4e https://www.encodeproject.org/files/ENCFF000PWA/@@download/ENCFF000PWA.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000PWC fastq reads ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 36 single-ended 1119632052 Richard Myers, HAIB 42dd51a08ec18fc8f911366cebab1cd8 https://www.encodeproject.org/files/ENCFF000PWC/@@download/ENCFF000PWC.fastq.gz Illumina Genome Analyzer IIx /files/ENCFF000QEX/ released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001UIW bed broadPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 1 177639 Richard Myers, HAIB 6e8f85d3ab428ef95e3382237b1b2419 https://www.encodeproject.org/files/ENCFF001UIW/@@download/ENCFF001UIW.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF001UIY bed broadPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 1 218408 Richard Myers, HAIB f8be948c85a0facd73902d03412464c0 https://www.encodeproject.org/files/ENCFF001UIY/@@download/ENCFF001UIY.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity missing derived_from, biological replicates with identical biosample control insufficient read depth ENCFF002CLN bed narrowPeak optimal idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 312249 ENCODE Consortium Analysis Working Group d1af167591078c356c4ff1f625297619 https://www.encodeproject.org/files/ENCFF002CLN/@@download/ENCFF002CLN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF968XJD bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE ENCFF002CLN 622854 ENCODE Consortium 780afa7d0324a4b3680a92a240e56202 https://www.encodeproject.org/files/ENCFF968XJD/@@download/ENCFF968XJD.bigBed hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF917RFP bam unfiltered alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWA, ENCFF643CGH 1152325423 ENCODE Processing Pipeline 9ada609b03b7810758b863901298df22 https://www.encodeproject.org/files/ENCFF917RFP/@@download/ENCFF917RFP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF438DHS bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWA, ENCFF643CGH 612365247 ENCODE Processing Pipeline eed32ba312b25c9564c5e5f9d0d4d3d1 https://www.encodeproject.org/files/ENCFF438DHS/@@download/ENCFF438DHS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF308RGN bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWC, ENCFF643CGH 914277873 ENCODE Processing Pipeline 2130fc207690f965c7a70e73e6ee2d25 https://www.encodeproject.org/files/ENCFF308RGN/@@download/ENCFF308RGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF005MDO bam unfiltered alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWC, ENCFF643CGH 1510432253 ENCODE Processing Pipeline 4822bd73719d863c15ad918833679a8e https://www.encodeproject.org/files/ENCFF005MDO/@@download/ENCFF005MDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF727DWE bam unfiltered alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWA, ENCFF807MUK 1150169255 ENCODE Processing Pipeline 4ebd526a66f2a7eafea475cbe1ea74a2 https://www.encodeproject.org/files/ENCFF727DWE/@@download/ENCFF727DWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF849WYX bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWA, ENCFF807MUK 612766004 ENCODE Processing Pipeline 2026e3ba49cd1962705f2941d8b9f7a5 https://www.encodeproject.org/files/ENCFF849WYX/@@download/ENCFF849WYX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF501RLG bam unfiltered alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWC, ENCFF807MUK 1507713767 ENCODE Processing Pipeline 1ab19b47462c39f6de0662e520f828c9 https://www.encodeproject.org/files/ENCFF501RLG/@@download/ENCFF501RLG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF747HGM bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWC, ENCFF807MUK 914786444 ENCODE Processing Pipeline 65d015a573436527cfbb02c83685506f https://www.encodeproject.org/files/ENCFF747HGM/@@download/ENCFF747HGM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF281HBB bigWig signal p-value ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438DHS, ENCFF772PJM 214904341 ENCODE Processing Pipeline 65b58222adc956d921614e5e4b089004 https://www.encodeproject.org/files/ENCFF281HBB/@@download/ENCFF281HBB.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF932PBI bigWig signal p-value ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF308RGN, ENCFF772PJM 201969144 ENCODE Processing Pipeline e32b421c586c1eb836f5cd2d7f62c0a5 https://www.encodeproject.org/files/ENCFF932PBI/@@download/ENCFF932PBI.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF507KDS bigWig signal p-value ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF308RGN, ENCFF438DHS, ENCFF772PJM 186713116 ENCODE Processing Pipeline 3663075a3824d5e632c1dcd0a08f9442 https://www.encodeproject.org/files/ENCFF507KDS/@@download/ENCFF507KDS.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF862YKN bigWig fold change over control ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF308RGN, ENCFF772PJM 320179376 ENCODE Processing Pipeline c8aa2dc15a0c63341fee2e926c07c61f https://www.encodeproject.org/files/ENCFF862YKN/@@download/ENCFF862YKN.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF102FPL bigWig fold change over control ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438DHS, ENCFF772PJM 244670503 ENCODE Processing Pipeline eab076b1f60c537497cb1aa055b74cfd https://www.encodeproject.org/files/ENCFF102FPL/@@download/ENCFF102FPL.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF550IIR bigBed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF980RKS 10239110 ENCODE Processing Pipeline 7fff50c28712d161e380b55bd2b05568 https://www.encodeproject.org/files/ENCFF550IIR/@@download/ENCFF550IIR.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF011BTB bigBed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF145FYQ 2045757 ENCODE Processing Pipeline bbdd2ffe220c5da0b7f42c58823ca279 https://www.encodeproject.org/files/ENCFF011BTB/@@download/ENCFF011BTB.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF650KQD bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF308RGN, ENCFF438DHS, ENCFF772PJM 5153728 ENCODE Processing Pipeline 7f5b53d2cccfd07ff26ce65cdd16f86a https://www.encodeproject.org/files/ENCFF650KQD/@@download/ENCFF650KQD.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF980RKS bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF308RGN, ENCFF772PJM 4304832 ENCODE Processing Pipeline 3801d07b163dae30363e2fb2af8a73e3 https://www.encodeproject.org/files/ENCFF980RKS/@@download/ENCFF980RKS.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF364WAT bed narrowPeak conservative idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF145FYQ, ENCFF419RSJ, ENCFF650KQD, ENCFF980RKS 7082 ENCODE Processing Pipeline 43434f95dab24f3f53d2e33b299e6116 https://www.encodeproject.org/files/ENCFF364WAT/@@download/ENCFF364WAT.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF619WVY bigWig fold change over control ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF308RGN, ENCFF438DHS, ENCFF772PJM 504874826 ENCODE Processing Pipeline 64d97b0b6b4857ae7eeef4e2d0905518 https://www.encodeproject.org/files/ENCFF619WVY/@@download/ENCFF619WVY.bigWig GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF145FYQ bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF438DHS, ENCFF772PJM 934563 ENCODE Processing Pipeline a1f72cc6c4bbbf5378d73c25d6760d80 https://www.encodeproject.org/files/ENCFF145FYQ/@@download/ENCFF145FYQ.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF615EDN bigBed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF650KQD 10795762 ENCODE Processing Pipeline f442d97bb4900568a2eff163084248e4 https://www.encodeproject.org/files/ENCFF615EDN/@@download/ENCFF615EDN.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF467WOR bed narrowPeak optimal idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF145FYQ, ENCFF419RSJ, ENCFF650KQD, ENCFF980RKS 131560 ENCODE Processing Pipeline 0eea4ec13ed728c59950c45219d7f880 https://www.encodeproject.org/files/ENCFF467WOR/@@download/ENCFF467WOR.bed.gz GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF787GVU bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF467WOR 250881 ENCODE Processing Pipeline 2bf30aae32668b231ba6d4efaf8a745a https://www.encodeproject.org/files/ENCFF787GVU/@@download/ENCFF787GVU.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF472AQO bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF364WAT 46544 ENCODE Processing Pipeline b93a4e3bc08fa7f030af9dc71d7e068c https://www.encodeproject.org/files/ENCFF472AQO/@@download/ENCFF472AQO.bigBed GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF301NGC bigWig signal p-value ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF747HGM, ENCFF750MIM, ENCFF849WYX 186852405 ENCODE Processing Pipeline 39cd008636af18efda8096bc4a757644 https://www.encodeproject.org/files/ENCFF301NGC/@@download/ENCFF301NGC.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF159FEO bigWig fold change over control ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF849WYX 244716492 ENCODE Processing Pipeline 52d887d48d1e5dbb1a2be9b07b787100 https://www.encodeproject.org/files/ENCFF159FEO/@@download/ENCFF159FEO.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF015HEH bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF747HGM, ENCFF750MIM 4316404 ENCODE Processing Pipeline 8207f76f290825f56931668fde6dc792 https://www.encodeproject.org/files/ENCFF015HEH/@@download/ENCFF015HEH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF475TQE bed narrowPeak optimal idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF015HEH, ENCFF146YXX, ENCFF251XOI 128953 ENCODE Processing Pipeline 146c148cf8221517c340d416403eefc1 https://www.encodeproject.org/files/ENCFF475TQE/@@download/ENCFF475TQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF979LFW bigWig signal p-value ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF747HGM, ENCFF750MIM 202223249 ENCODE Processing Pipeline 006798a2c2b780d7dd16c7c6708b246d https://www.encodeproject.org/files/ENCFF979LFW/@@download/ENCFF979LFW.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF363CMR bigWig signal p-value ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF849WYX 215005974 ENCODE Processing Pipeline f2f8e15ec84d9b22386c05d67edc41da https://www.encodeproject.org/files/ENCFF363CMR/@@download/ENCFF363CMR.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF384SYF bigBed narrowPeak conservative idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF355QAJ 47198 ENCODE Processing Pipeline e220bbf32d7a048f5c4a91847764cf51 https://www.encodeproject.org/files/ENCFF384SYF/@@download/ENCFF384SYF.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF738BYI bigWig fold change over control ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF747HGM, ENCFF750MIM 316982094 ENCODE Processing Pipeline a7305aebf52b28c875ee20cf8c63c671 https://www.encodeproject.org/files/ENCFF738BYI/@@download/ENCFF738BYI.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF813RAT bigWig fold change over control ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF747HGM, ENCFF750MIM, ENCFF849WYX 496022079 ENCODE Processing Pipeline cf18d1d2dcecdb06ce477f07efe53ace https://www.encodeproject.org/files/ENCFF813RAT/@@download/ENCFF813RAT.bigWig hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF931LMI bigBed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015HEH 10247016 ENCODE Processing Pipeline 40776a4d2570fe8b5e4cd7f9b626ab17 https://www.encodeproject.org/files/ENCFF931LMI/@@download/ENCFF931LMI.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF777FYO bigBed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF146YXX 2050395 ENCODE Processing Pipeline a555f293c234bc755b85802eb798b311 https://www.encodeproject.org/files/ENCFF777FYO/@@download/ENCFF777FYO.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF251XOI bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF747HGM, ENCFF750MIM, ENCFF849WYX 5158904 ENCODE Processing Pipeline a6af902871f1bad066237d162797d318 https://www.encodeproject.org/files/ENCFF251XOI/@@download/ENCFF251XOI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF442BAV bigBed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF251XOI 10794087 ENCODE Processing Pipeline 879cf95bb4ffcdf4041d733d79156242 https://www.encodeproject.org/files/ENCFF442BAV/@@download/ENCFF442BAV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF355QAJ bed narrowPeak conservative idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF001TDO, ENCFF015HEH, ENCFF146YXX, ENCFF251XOI 7620 ENCODE Processing Pipeline fcdee593f587490905a36eea5714b299 https://www.encodeproject.org/files/ENCFF355QAJ/@@download/ENCFF355QAJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF146YXX bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF849WYX 937915 ENCODE Processing Pipeline 5a4600cdc6485de1e8feaea493b849e8 https://www.encodeproject.org/files/ENCFF146YXX/@@download/ENCFF146YXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF405NCV bigBed narrowPeak optimal idr thresholded peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF475TQE 246868 ENCODE Processing Pipeline 91d2d8182a18ce488fb501bf4725d7dd https://www.encodeproject.org/files/ENCFF405NCV/@@download/ENCFF405NCV.bigBed hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF262JDY fastq reads ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF829YZO 3117985194 Michael Snyder, Stanford 231f829bdc1cbe7ec446103be9731164 SRA:SRR6214400 https://www.encodeproject.org/files/ENCFF262JDY/@@download/ENCFF262JDY.fastq.gz Illumina HiSeq 4000 /files/ENCFF843WCR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF829YZO fastq reads ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF262JDY 3523510841 Michael Snyder, Stanford c668b41682509dfab7671bd87efaaa07 SRA:SRR6214400 https://www.encodeproject.org/files/ENCFF829YZO/@@download/ENCFF829YZO.fastq.gz Illumina HiSeq 4000 /files/ENCFF079TRL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF527WXN bam unfiltered alignments ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF262JDY, ENCFF807MUK, ENCFF829YZO 5937071914 ENCODE Processing Pipeline 40706c3324d3110a7341b13118a5159e https://www.encodeproject.org/files/ENCFF527WXN/@@download/ENCFF527WXN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF123STP bam alignments ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF262JDY, ENCFF807MUK, ENCFF829YZO 4250583615 ENCODE Processing Pipeline 85f8759a68b151f72e3029d768be62c7 https://www.encodeproject.org/files/ENCFF123STP/@@download/ENCFF123STP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF880WPI bam unfiltered alignments ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF262JDY, ENCFF643CGH, ENCFF829YZO 5942130496 ENCODE Processing Pipeline fa6ee7d61bcc769ffeee3535bbb64baf https://www.encodeproject.org/files/ENCFF880WPI/@@download/ENCFF880WPI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF204QUC bam alignments ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF262JDY, ENCFF643CGH, ENCFF829YZO 4255318741 ENCODE Processing Pipeline c439badc7f080b3c82308e77978c57fb https://www.encodeproject.org/files/ENCFF204QUC/@@download/ENCFF204QUC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF878BJW bigWig fold change over control ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF123STP, ENCFF584NWF 1478639159 ENCODE Processing Pipeline f03761ca234fcec53bf49aa7c38dba1d https://www.encodeproject.org/files/ENCFF878BJW/@@download/ENCFF878BJW.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF319XKL bigBed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF354MGW 11782477 ENCODE Processing Pipeline a45675c3159a6fdc4cfeead84772e25c https://www.encodeproject.org/files/ENCFF319XKL/@@download/ENCFF319XKL.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF142OMO bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF634DDY 1036323 ENCODE Processing Pipeline b400aee4ad2d1818f12371bd4686f00b https://www.encodeproject.org/files/ENCFF142OMO/@@download/ENCFF142OMO.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF354MGW bed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF123STP, ENCFF584NWF 6501029 ENCODE Processing Pipeline 6b428241ad0dc646a3bfb9cd576c1e36 https://www.encodeproject.org/files/ENCFF354MGW/@@download/ENCFF354MGW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF634DDY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF354MGW 559752 ENCODE Processing Pipeline 7048ade5e7d78ff9a6d707123a5f48af https://www.encodeproject.org/files/ENCFF634DDY/@@download/ENCFF634DDY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF915JKB bigWig signal p-value ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF123STP, ENCFF584NWF 1527982634 ENCODE Processing Pipeline 0a074aa72e0917c0d05a40d03e209106 https://www.encodeproject.org/files/ENCFF915JKB/@@download/ENCFF915JKB.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF354VDT bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF866EIC 1056441 ENCODE Processing Pipeline 149ef703137ddda4149d5107acd9f14a https://www.encodeproject.org/files/ENCFF354VDT/@@download/ENCFF354VDT.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF431BXS bigWig signal p-value ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF204QUC, ENCFF990MMF 1543933428 ENCODE Processing Pipeline f30ffdececf4f94dbc70a14ba7eb305e https://www.encodeproject.org/files/ENCFF431BXS/@@download/ENCFF431BXS.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF175QRT bed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF204QUC, ENCFF990MMF 6540493 ENCODE Processing Pipeline 9aaa706833c75f0985b1ce3fccffadae https://www.encodeproject.org/files/ENCFF175QRT/@@download/ENCFF175QRT.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF866EIC bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF175QRT, ENCFF419RSJ 571916 ENCODE Processing Pipeline f425deef9e1e7570c0d155836616573b https://www.encodeproject.org/files/ENCFF866EIC/@@download/ENCFF866EIC.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF791NUX bigWig fold change over control ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF204QUC, ENCFF990MMF 1496963722 ENCODE Processing Pipeline 498714fe24a309a3a9aab2df10176335 https://www.encodeproject.org/files/ENCFF791NUX/@@download/ENCFF791NUX.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF163UAU bigBed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF175QRT 11843792 ENCODE Processing Pipeline 2c959ddb18bcd6a14c3afb98d02c92c0 https://www.encodeproject.org/files/ENCFF163UAU/@@download/ENCFF163UAU.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF042CMS fastq reads ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 2 ENCFF500XDC 3163405803 Michael Snyder, Stanford d9f835d396b37ec20c7fa7808b484bcd SRA:SRR6214338 https://www.encodeproject.org/files/ENCFF042CMS/@@download/ENCFF042CMS.fastq.gz Illumina HiSeq 4000 /files/ENCFF079TRL/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF500XDC fastq reads ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 1 100 paired-ended 1 ENCFF042CMS 2767453120 Michael Snyder, Stanford bdfc340386ee5c6e3a3ad0357822513d SRA:SRR6214338 https://www.encodeproject.org/files/ENCFF500XDC/@@download/ENCFF500XDC.fastq.gz Illumina HiSeq 4000 /files/ENCFF843WCR/ released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF239ZYE bam unfiltered alignments ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF042CMS, ENCFF500XDC, ENCFF643CGH 5370506663 ENCODE Processing Pipeline 8216c49118fce582fe30cc0dfb1eff4b https://www.encodeproject.org/files/ENCFF239ZYE/@@download/ENCFF239ZYE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF011FXT bam unfiltered alignments ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF042CMS, ENCFF500XDC, ENCFF807MUK 5367489753 ENCODE Processing Pipeline fa673d38f0adaa0922f8c578e4d973e4 https://www.encodeproject.org/files/ENCFF011FXT/@@download/ENCFF011FXT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF536IZP bam alignments ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF042CMS, ENCFF500XDC, ENCFF643CGH 3794774325 ENCODE Processing Pipeline e057b653a1525d32c42e6465b95749e6 https://www.encodeproject.org/files/ENCFF536IZP/@@download/ENCFF536IZP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF811AZL bam alignments ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF042CMS, ENCFF500XDC, ENCFF807MUK 3790131504 ENCODE Processing Pipeline c443f0de3cab290bfd019a907bf9343a https://www.encodeproject.org/files/ENCFF811AZL/@@download/ENCFF811AZL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF913WSO bigWig fold change over control ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF584NWF, ENCFF811AZL 1372889643 ENCODE Processing Pipeline 2ff47cae60a17ceb1a6e56f1f0e542e8 https://www.encodeproject.org/files/ENCFF913WSO/@@download/ENCFF913WSO.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF238FUX bed narrowPeak peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF584NWF, ENCFF811AZL 6230056 ENCODE Processing Pipeline 96deeec52f58dd83ad3ff9d1ba91e044 https://www.encodeproject.org/files/ENCFF238FUX/@@download/ENCFF238FUX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF164YIY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF001TDO, ENCFF238FUX 271803 ENCODE Processing Pipeline 99cbe94b4960e205a2efde94b7d9ce9b https://www.encodeproject.org/files/ENCFF164YIY/@@download/ENCFF164YIY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF215VSR bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF164YIY 525848 ENCODE Processing Pipeline 76255da320dc152b8129960c60869ca4 https://www.encodeproject.org/files/ENCFF215VSR/@@download/ENCFF215VSR.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF340UFR bigWig signal p-value ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF584NWF, ENCFF811AZL 1305947080 ENCODE Processing Pipeline 4506482be944ef5ae90234624d1ec529 https://www.encodeproject.org/files/ENCFF340UFR/@@download/ENCFF340UFR.bigWig hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF130ITK bigBed narrowPeak peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF238FUX 11578377 ENCODE Processing Pipeline 0fb51ad3f346d34cc8d72b851ffe0ff1 https://www.encodeproject.org/files/ENCFF130ITK/@@download/ENCFF130ITK.bigBed hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF236XBY bed narrowPeak pseudoreplicated idr thresholded peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF419RSJ, ENCFF629KNX 268158 ENCODE Processing Pipeline e9d26dd8e73c874307ff241904e79e08 https://www.encodeproject.org/files/ENCFF236XBY/@@download/ENCFF236XBY.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF345AKE bigWig signal p-value ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF536IZP, ENCFF990MMF 1284460175 ENCODE Processing Pipeline b93020d2ad6633a2551ab4389bbd4b3d https://www.encodeproject.org/files/ENCFF345AKE/@@download/ENCFF345AKE.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF993AFQ bigBed narrowPeak pseudoreplicated idr thresholded peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF236XBY 521253 ENCODE Processing Pipeline 2096a2fb8738de4cc957f7d335a805ac https://www.encodeproject.org/files/ENCFF993AFQ/@@download/ENCFF993AFQ.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF134ANM bigWig fold change over control ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF536IZP, ENCFF990MMF 1406874863 ENCODE Processing Pipeline 4791b1653a2f8e5bedc818569a70f291 https://www.encodeproject.org/files/ENCFF134ANM/@@download/ENCFF134ANM.bigWig GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF629KNX bed narrowPeak peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF536IZP, ENCFF990MMF 6240912 ENCODE Processing Pipeline cc9a9fc57e932cacba15f027a538e6bc https://www.encodeproject.org/files/ENCFF629KNX/@@download/ENCFF629KNX.bed.gz GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF081ZSN bigBed narrowPeak peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF629KNX 11606657 ENCODE Processing Pipeline 168a714cbdace2fc49467e4481909486 https://www.encodeproject.org/files/ENCFF081ZSN/@@download/ENCFF081ZSN.bigBed GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption